BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
         (803 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|260431693|ref|ZP_05785664.1| DNA gyrase, B subunit [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415521|gb|EEX08780.1| DNA gyrase, B subunit [Silicibacter lacuscaerulensis ITI-1157]
          Length = 805

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/805 (57%), Positives = 592/805 (73%), Gaps = 4/805 (0%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS++ Q N  Y A+SI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSEDAQANQEYGAESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TV ++ D S +VSDNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADHVTVKIHADSSVSVSDNGRGIPVDIHPEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHFARFERGETVEHLKVVGECGDRTGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  +++++TL+ RLREL+FLNS V+I L+D+R  E  E  +FY+GG++ FV YLDR 
Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIILVDERPAERLETELFYEGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P M  PI I+G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R+ALTR 
Sbjct: 241 KTPAMPEPIYIKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRAALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 301 INNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGM 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EE+P EAK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 VNEKLAEWFEENPNEAKTIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+ELFLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+MLSSQEIG L+ 
Sbjct: 421 KDPSKTELFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLSSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FDI+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ +L+DYLINQ +   +     S   I   DL   +D+A ++ +
Sbjct: 541 PLYKVSRGKSEVYLKDQAALDDYLINQGIEGAVL-RLGSGEEIVGQDLARVVDEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F   +       +A K+A RL+ IA + E+ W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADKVAARLDQIALEYERGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++E Y    +L+       I G
Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQSLQEVYSLPATLVRRDRVQVIHG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+V++ D  +ADDLF+
Sbjct: 720 PLDLLRAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMVEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804


>gi|99079848|ref|YP_612002.1| DNA gyrase subunit B [Ruegeria sp. TM1040]
 gi|99036128|gb|ABF62740.1| DNA gyrase subunit B [Ruegeria sp. TM1040]
          Length = 805

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/805 (57%), Positives = 593/805 (73%), Gaps = 4/805 (0%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+N Q  + Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSENEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TVT++ D S +VSDNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADRVTVTIHADSSVSVSDNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTVKHLTVVGDCGDRTGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  +++++TL+ RLREL+FLNS V+I + D+R  E  E  +FY+GG+  FV YLDR 
Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIVVADERPAERLESELFYEGGVNEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+M +PI I+G +D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KTPVMDAPIYIKGEKDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES 
Sbjct: 301 INSYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ W EE+P  AK +V K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 MGEKLAEWFEENPNVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+MLSSQEIG L+ 
Sbjct: 421 KDPAKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLSSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ +++DYLINQ +   +    D    I+  DL   +D+A ++ +
Sbjct: 541 PLYKVSRGKSEVYLKDQAAMDDYLINQGVDGALLRLGDGSE-IAGQDLTRVVDEARRLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           L+  F  ++ +  +EQA I+G F   +       +A K+A RL+ IA + E+ W G I  
Sbjct: 600 LLDAFPTHYPRHILEQAAIAGAFVPGAVDADLQGVADKVAARLDLIALEYERGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++E Y    +L     +  I G
Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTKSLQEIYGAPATLHRKDRQQAIYG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+++QRYKGLGEMN  QLWETTL+PD R+LL+V++ D  +ADDLF+
Sbjct: 720 PLDLLKAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMIEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040491|gb|ACT57287.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score =  970 bits (2508), Expect = 0.0,   Method: Composition-based stats.
 Identities = 803/803 (100%), Positives = 803/803 (100%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY
Sbjct: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL
Sbjct: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD
Sbjct: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK
Sbjct: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI
Sbjct: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV
Sbjct: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER
Sbjct: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA
Sbjct: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP
Sbjct: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL
Sbjct: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS
Sbjct: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC
Sbjct: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL
Sbjct: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780

Query: 781 MGDEVEPRREFIQENSLPSALDI 803
           MGDEVEPRREFIQENSLPSALDI
Sbjct: 781 MGDEVEPRREFIQENSLPSALDI 803


>gi|259417608|ref|ZP_05741527.1| DNA gyrase, B subunit [Silicibacter sp. TrichCH4B]
 gi|259346514|gb|EEW58328.1| DNA gyrase, B subunit [Silicibacter sp. TrichCH4B]
          Length = 805

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/805 (57%), Positives = 592/805 (73%), Gaps = 4/805 (0%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+N Q  + Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSENEQAPTEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TVT++ D S +VSDNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADRVTVTIHADSSVSVSDNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTVKHLAVVGDCGDRTGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  +++++TL+ RLREL+FLNS V+I + D+R  E  E  +FY+GG+  FV YLDR 
Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIVVTDERPAERLESELFYEGGVNEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+M +PI I+G +D+I I++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KTPVMDAPIYIKGEKDDIGIEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES 
Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ W EE+P  AK +V K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 MGEKLAEWFEENPHVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ ++E+YLINQ +   I    D    I+  DL   +D+A ++++
Sbjct: 541 PLYKVSRGKSEVYLKDQAAMEEYLINQGVDGAILRLGDGSE-IAGQDLTRVVDEARRLNR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           L+  F  ++ +  +EQA I+G F   +       +A K+A RL+ IA + E+ W G I  
Sbjct: 600 LLDAFPTHYPRHILEQAAIAGAFVPGAVDSDLQGVADKVATRLDLIALEYERGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++E Y     L     +  I G
Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTKSLQEIYGAPAVLHRKDRQQAIYG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+++QRYKGLGEMN  QLWETTL+PD R+LL+V++ D  +ADDLF+
Sbjct: 720 PLDLLKAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMIEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804


>gi|254511739|ref|ZP_05123806.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535450|gb|EEE38438.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium KLH11]
          Length = 805

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/805 (57%), Positives = 590/805 (73%), Gaps = 4/805 (0%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS++ Q    Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSEDAQAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TV ++ D S +VSDNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADHVTVKIHADSSVSVSDNGRGIPVDIHPEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFEGGETAEHLKVVGECGDRTGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + FS  ++ +DTL+ RLREL+FLNS V+I LID+R  E  E  +FY+GG++ FV YLDR 
Sbjct: 181 NTFSNLEYAFDTLEKRLRELAFLNSGVRIILIDERPAERLETELFYEGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P M  PI I+G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KTPAMSDPIYIKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ L+ W EE+P EAK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 MNEKLAEWFEENPNEAKGIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+MLSSQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLSSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ +L+DYLINQ +   +      + +I   DL   +D+A ++ +
Sbjct: 541 PLYKVSRGKSEVYLKDQAALDDYLINQGVEGAVLKLGSGEEII-GQDLTRVVDEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F   +       +A K+A RL+ IA + E+ W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADKVAARLDLIALEYERGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++E Y T  +LI       I G
Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQSLQEVYNTPATLIRRDRMQAIHG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+V++ D  +ADDLF+
Sbjct: 720 PLDLLRAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMVEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804


>gi|260574430|ref|ZP_05842434.1| DNA gyrase, B subunit [Rhodobacter sp. SW2]
 gi|259023326|gb|EEW26618.1| DNA gyrase, B subunit [Rhodobacter sp. SW2]
          Length = 805

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/805 (56%), Positives = 591/805 (73%), Gaps = 4/805 (0%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  + + +YDADSI++L+GL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSEAAKTTPTYDADSIKVLRGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +A  ++V ++ DGS +V DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HATAVSVKIHADGSVSVRDNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LR+ R G  Y   F++G     L + G A    GTEV FL S 
Sbjct: 121 LHGVGVSVVNALSEWLELRVWRNGKEYFAKFVHGDTVEHLRIVGDAPGQKGTEVRFLASL 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             FS  D+ + TL++RLREL+FLNS V+I L D+R  EP +  + Y+GG+  FV YLDR 
Sbjct: 181 QTFSNLDYVFKTLENRLRELAFLNSGVKIVLEDERPAEPLKTELMYEGGVREFVRYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +M  PI I G R  I++++AM WND YHE VL FTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 241 KSSIMADPIYIIGERAGITVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +K++K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ 
Sbjct: 301 INNYAQSSGIAKREKIDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EE+P  AKIIV K+++A++ R+AAR+ARDLTRRK  LD+ASLPGKLADC E
Sbjct: 361 VNEKLAEWFEENPANAKIIVGKIIEAALAREAARKARDLTRRKTALDVASLPGKLADCQE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP KSELFLVEGDSAGGSAKQGRSR NQA+LPL+GKILNVERARFD+ML+SQEIGTLIT
Sbjct: 421 RDPAKSELFLVEGDSAGGSAKQGRSRANQAVLPLKGKILNVERARFDRMLASQEIGTLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP +I  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPQVIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGKS  Y+KD+ +LEDYL+   +   +         I+  DL   I+ A +  +
Sbjct: 541 PLYKVARGKSEVYLKDQAALEDYLVQMGVDGAVLRLGT-GEDIAGADLARVIEGARQFRR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           +++ F  ++ +  +EQA ++G F+    +    ++A  +A RL+ +A + E+ W G I  
Sbjct: 600 VLEAFPTHYPRHILEQAALAGAFDPGRAESDLQAVADTVARRLDAVALEYERGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G+ + S  ++     S    + Y+T   L+    +  I G
Sbjct: 660 DHGIRLSRILRGVEELRTLDGAVLRSGEARRLSQVSATTRDVYVTPARLVRKDREQLIHG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I + G KG+++QRYKGLGEMN  QLWETTL+P+ R+LL+VK+ D ++ADD+F+
Sbjct: 720 PIELLKAILAEGEKGLTLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDDLAEADDIFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQQNALNVENLD 804


>gi|254477019|ref|ZP_05090405.1| DNA gyrase, B subunit [Ruegeria sp. R11]
 gi|214031262|gb|EEB72097.1| DNA gyrase, B subunit [Ruegeria sp. R11]
          Length = 805

 Score =  968 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/805 (56%), Positives = 588/805 (73%), Gaps = 4/805 (0%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS +    + Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ D S +VSDNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADRVVVKIHADSSVSVSDNGRGIPVDIHPEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAKHLTVVGDCGDQTGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  +++++TL+ RLREL+FLNS V+I L D+R  E     +FY+GG++ FV YLDR 
Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIILEDERPAEKLTAELFYEGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+M +P+ I G +D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KTPVMDAPVYITGEKDDIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES 
Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ W EE+P EAK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 VGEKLAEWFEENPNEAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ +L++YLINQ +   +     S   +   DL   +D+A ++ +
Sbjct: 541 PLYKVSRGKSEVYLKDQAALDEYLINQGVEGAVLKLG-SGEELVGQDLTRVVDEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA I+G F   +       +A K+A RL+ IA + E+ W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAIAGAFVPGAVDSNLQGVADKVAARLDAIALEYERGWSGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+N ++E Y T  +L+       I G
Sbjct: 660 DHGIRLSRILRGVEELRTLDGPMLRSGEARKTGSFTNSLQEIYGTTATLVRRDRAQTIHG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+++QRYKGLGEMN  QLWETTL+PD R+LL+V++ D  +ADDLF+
Sbjct: 720 PLGLLQAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMVEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804


>gi|254465523|ref|ZP_05078934.1| DNA gyrase, B subunit [Rhodobacterales bacterium Y4I]
 gi|206686431|gb|EDZ46913.1| DNA gyrase, B subunit [Rhodobacterales bacterium Y4I]
          Length = 805

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/805 (56%), Positives = 588/805 (73%), Gaps = 4/805 (0%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS +    + Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TV ++ D S +VSDNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADHVTVKIHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R+G  +   F  G     L V G  G+ TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHIARFERGDTVKHLEVVGDCGDRTGTEVRFMAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  +++++TL+ RLREL+FLNS V+I L D+R  E     ++Y+GG+  FV YLDRH
Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIILEDERPAEKITAELYYEGGVREFVKYLDRH 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+M +P+ I G +D I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KTPVMDAPVYIVGEKDYIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES 
Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ W EE+P +AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 MGEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+MLSSQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLSSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FDI+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGKS  Y+KD+ +L+DYLINQ +   +    D    I+  DL   +D+A ++ +
Sbjct: 541 PLYKVARGKSEVYLKDQAALDDYLINQGVDGALLKLGDGSE-IAGADLTRVVDEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F   +       +A K+A RL+ IA + E+ W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDSDLQGVADKVATRLDAIALEYERGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++E Y     L+       I G
Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTKSLQEIYGATAQLVRRDRSQLIHG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+++QRYKGLGEMN  QLWETTL+PD R+LL+V++ D  +ADDLF+
Sbjct: 720 PLGLLQAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMVEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804


>gi|126738622|ref|ZP_01754327.1| DNA gyrase subunit B [Roseobacter sp. SK209-2-6]
 gi|126720421|gb|EBA17127.1| DNA gyrase subunit B [Roseobacter sp. SK209-2-6]
          Length = 805

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/805 (56%), Positives = 590/805 (73%), Gaps = 4/805 (0%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+N Q+ + Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSENEQSPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TV ++ D S +V DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADHVTVKIHADSSVSVGDNGRGIPVDIHPEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F  G     L V G  G+ TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAKHLEVVGDCGDRTGTEVRFMAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  +++++TL+ RLREL+FLNS V+I L D+R  E     +FY GG++ FV YLDRH
Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIILEDERPAEKLTAELFYDGGVKEFVKYLDRH 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+M++P+ I G +D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KTPVMEAPVYIVGEKDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES 
Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ W EE+P +AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 MGEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PL+ + RGKS  Y+KD+ +L+DYLINQ +   +    +    I+  DL   +D+A ++ +
Sbjct: 541 PLFKVARGKSEVYLKDQAALDDYLINQGVDGAVLKLGNGSE-IAGADLTRIVDEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F   +       +A K+A RL+ IA + E+ W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDSDLQGVADKVAQRLDAIALEYERGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++E Y T   LI       I G
Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQSLQEIYGTTGQLIRRDRVQMIHG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+V++ D  +ADDLF+
Sbjct: 720 PLDLLKAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMVEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804


>gi|153212956|ref|ZP_01948550.1| DNA gyrase, subunit B [Vibrio cholerae 1587]
 gi|124116182|gb|EAY35002.1| DNA gyrase, subunit B [Vibrio cholerae 1587]
          Length = 805

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 554/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDEE++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N E  +D+    + A +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWAQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                V+    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + LD +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD+LF+
Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|323493784|ref|ZP_08098902.1| DNA gyrase subunit B [Vibrio brasiliensis LMG 20546]
 gi|323311918|gb|EGA65064.1| DNA gyrase subunit B [Vibrio brasiliensis LMG 20546]
          Length = 805

 Score =  966 bits (2496), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/812 (50%), Positives = 550/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIIVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++
Sbjct: 116 HGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DKTGTQIRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I LID+R  E +     ++GGI+AFV +L+ +K
Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGIQAFVDHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y +  +L             +S   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALSGEALEKLVQQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L+      + +  + + + +     E   D     +    L  +LN           E  
Sbjct: 594 LVDRMSRRYPRALVHELIYTPRLTAEQCHDAAAVEAWTKTLVEQLNAKEVGASQYSVEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  S   V     GV  + VL    I S         S  +E        +     
Sbjct: 654 QHAELGLSLPKVVVRTHGVTHEHVLSIDLINSKEYGKLATLSEALEGLIEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              ++     L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQPVSSFVDALEWLIKESRRGLSLQRYKGLGEMNPEQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|229530199|ref|ZP_04419588.1| DNA gyrase subunit B [Vibrio cholerae 12129(1)]
 gi|229332332|gb|EEN97819.1| DNA gyrase subunit B [Vibrio cholerae 12129(1)]
          Length = 805

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDEE++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N E  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                V+    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + LD +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD+LF+
Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|254225547|ref|ZP_04919156.1| DNA gyrase, subunit B [Vibrio cholerae V51]
 gi|254291124|ref|ZP_04961921.1| DNA gyrase, subunit B [Vibrio cholerae AM-19226]
 gi|125621867|gb|EAZ50192.1| DNA gyrase, subunit B [Vibrio cholerae V51]
 gi|150422969|gb|EDN14919.1| DNA gyrase, subunit B [Vibrio cholerae AM-19226]
          Length = 805

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDEE++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N E  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                V+    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + LD +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD+LF+
Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|260595833|ref|YP_003208404.1| DNA gyrase subunit B [Cronobacter turicensis z3032]
 gi|260215010|emb|CBA26674.1| DNA gyrase subunit B [Cronobacter turicensis z3032]
          Length = 804

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 558/806 (69%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVSDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I++ ++++G+   PL VTG     TGT+V F PS + F+   
Sbjct: 122 VVNALSQKLELVIRREGKIHQQTYVHGVPQAPLAVTGDTE-QTGTQVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L+DKR  +  +    Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLVDKRDGK--QDHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   I+   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHANASAPAIAGEALEKLVSEYNGAQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + +  +++ +     + E   D+       S L   LN   +     K +   +   +
Sbjct: 599 RRYPRALLKELIYQPTLSEEMLADEANVTRWVSALITTLNENEQHGSVWKYDIRENAETH 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   ++L+   +     +       ++         +     +  +  
Sbjct: 659 RFEPVVRVRTHGVDTDYILDHEFVTGGEYRRLCTLGEKLRGLIEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|15640047|ref|NP_062599.1| DNA gyrase subunit B [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121727887|ref|ZP_01680946.1| DNA gyrase, subunit B [Vibrio cholerae V52]
 gi|147673680|ref|YP_001218397.1| DNA gyrase subunit B [Vibrio cholerae O395]
 gi|153819850|ref|ZP_01972517.1| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457]
 gi|153821919|ref|ZP_01974586.1| DNA gyrase, subunit B [Vibrio cholerae B33]
 gi|227080252|ref|YP_002808803.1| DNA gyrase, subunit B [Vibrio cholerae M66-2]
 gi|229508300|ref|ZP_04397804.1| DNA gyrase subunit B [Vibrio cholerae BX 330286]
 gi|229508861|ref|ZP_04398352.1| DNA gyrase subunit B [Vibrio cholerae B33]
 gi|229517132|ref|ZP_04406578.1| DNA gyrase subunit B [Vibrio cholerae RC9]
 gi|229606574|ref|YP_002877222.1| DNA gyrase subunit B [Vibrio cholerae MJ-1236]
 gi|254851580|ref|ZP_05240930.1| DNA gyrase subunit B [Vibrio cholerae MO10]
 gi|255746803|ref|ZP_05420749.1| DNA gyrase subunit B [Vibrio cholera CIRS 101]
 gi|262155882|ref|ZP_06029004.1| DNA gyrase subunit B [Vibrio cholerae INDRE 91/1]
 gi|262167103|ref|ZP_06034818.1| DNA gyrase subunit B [Vibrio cholerae RC27]
 gi|298501200|ref|ZP_07010999.1| DNA gyrase, B subunit [Vibrio cholerae MAK 757]
 gi|11386840|sp|Q9KVX3|GYRB_VIBCH RecName: Full=DNA gyrase subunit B
 gi|9654406|gb|AAF93193.1| DNA gyrase, subunit B [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121629831|gb|EAX62246.1| DNA gyrase, subunit B [Vibrio cholerae V52]
 gi|126509611|gb|EAZ72205.1| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457]
 gi|126520539|gb|EAZ77762.1| DNA gyrase, subunit B [Vibrio cholerae B33]
 gi|146315563|gb|ABQ20102.1| DNA gyrase, subunit B [Vibrio cholerae O395]
 gi|227008140|gb|ACP04352.1| DNA gyrase, subunit B [Vibrio cholerae M66-2]
 gi|227011982|gb|ACP08192.1| DNA gyrase, subunit B [Vibrio cholerae O395]
 gi|229346195|gb|EEO11167.1| DNA gyrase subunit B [Vibrio cholerae RC9]
 gi|229354136|gb|EEO19068.1| DNA gyrase subunit B [Vibrio cholerae B33]
 gi|229354573|gb|EEO19495.1| DNA gyrase subunit B [Vibrio cholerae BX 330286]
 gi|229369229|gb|ACQ59652.1| DNA gyrase subunit B [Vibrio cholerae MJ-1236]
 gi|254847285|gb|EET25699.1| DNA gyrase subunit B [Vibrio cholerae MO10]
 gi|255735560|gb|EET90959.1| DNA gyrase subunit B [Vibrio cholera CIRS 101]
 gi|262024489|gb|EEY43175.1| DNA gyrase subunit B [Vibrio cholerae RC27]
 gi|262030334|gb|EEY48976.1| DNA gyrase subunit B [Vibrio cholerae INDRE 91/1]
 gi|297540072|gb|EFH76134.1| DNA gyrase, B subunit [Vibrio cholerae MAK 757]
          Length = 805

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDEE++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N E  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                ++    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + LD +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD+LF+
Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|229520187|ref|ZP_04409614.1| DNA gyrase subunit B [Vibrio cholerae TM 11079-80]
 gi|229342781|gb|EEO07772.1| DNA gyrase subunit B [Vibrio cholerae TM 11079-80]
          Length = 805

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDEE++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N E  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                V+    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGFIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + LD +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD+LF+
Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|153826434|ref|ZP_01979101.1| DNA gyrase, subunit B [Vibrio cholerae MZO-2]
 gi|229515946|ref|ZP_04405403.1| DNA gyrase subunit B [Vibrio cholerae TMA 21]
 gi|149739820|gb|EDM54015.1| DNA gyrase, subunit B [Vibrio cholerae MZO-2]
 gi|229347046|gb|EEO12008.1| DNA gyrase subunit B [Vibrio cholerae TMA 21]
          Length = 805

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 554/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I LID+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLIDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDEE++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N E  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                V+    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + LD +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD+LF+
Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|254461194|ref|ZP_05074610.1| DNA gyrase, B subunit [Rhodobacterales bacterium HTCC2083]
 gi|206677783|gb|EDZ42270.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 805

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/805 (56%), Positives = 589/805 (73%), Gaps = 4/805 (0%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  QN+  Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSETEQNNAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ D S +VSDNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADAVNVKIHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS+WL+LRI R+G  +   F +G     L V G AG  TGTEV FL S 
Sbjct: 121 LHGVGVSVVNALSNWLELRIWRDGKEHVARFEHGDTAEHLKVVGDAGERTGTEVRFLASL 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  ++ +DTL+ RLREL+FLNS V+I L D+R  EP    ++Y GG++ FV YLDR 
Sbjct: 181 DTFSNLEYVFDTLEKRLRELAFLNSGVRIILEDERPAEPLRTELYYDGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +M  P+ + G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KSSIMPEPVYMIGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y   S  +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES 
Sbjct: 301 INNYAASSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EE+P EAKIIV K+++A+  R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 VNEKLAEWFEENPNEAKIIVGKIIEAAHAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFDKML+SQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDKMLNSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+  +++YLI Q +   +     +   I+  DLR  +++A ++ +
Sbjct: 541 PLYKVSRGKSEVYLKDQAEMDEYLIEQGIDGAVL-RQGNGEEINGQDLRRIVNEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA I+G F      +     A ++A RLN IA + E+ W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAIAGAFVPGVVDQDLQGTADRVAERLNLIALEYEQGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  +++ Y    +LI       I G
Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQSLQDVYNLPATLIRKDRNQMIFG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+VKI D ++ADDLF+
Sbjct: 720 PLDLLSAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKINDVAEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDIVEPRREFIQQNALNVENLD 804


>gi|156936079|ref|YP_001439995.1| DNA gyrase subunit B [Cronobacter sakazakii ATCC BAA-894]
 gi|156534333|gb|ABU79159.1| hypothetical protein ESA_03973 [Cronobacter sakazakii ATCC BAA-894]
          Length = 804

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/806 (50%), Positives = 558/806 (69%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVSDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I++ ++++G+   PL VTG   + TGT+V F PS + F+   
Sbjct: 122 VVNALSQKLELVIRREGKIHQQTYVHGVPQAPLAVTGDT-DQTGTQVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L+DKR  +  +    Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLVDKRDGK--QDHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         S   I+   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANASAPAIAGEALEKLVSEYNGAQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + +  +++ +     + E+  D+       S L   LN   +     K +   +    
Sbjct: 599 RRYPRALLKELIYQPTLSEETLADEANVTRWVSALITTLNDNEQHGSVWKYDIRENAETR 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   +VL+   +     +       ++         +     +  +  
Sbjct: 659 RFEPVVRVRTHGVDTDYVLDHEFVTGGEYRRLCTLGEKLRGLIEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|153802491|ref|ZP_01957077.1| DNA gyrase, subunit B [Vibrio cholerae MZO-3]
 gi|124121961|gb|EAY40704.1| DNA gyrase, subunit B [Vibrio cholerae MZO-3]
          Length = 805

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 554/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I LID+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLIDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDEE++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N E  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                ++    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + LD +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD+LF+
Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|121587244|ref|ZP_01677017.1| DNA gyrase, subunit B [Vibrio cholerae 2740-80]
 gi|121548490|gb|EAX58546.1| DNA gyrase, subunit B [Vibrio cholerae 2740-80]
          Length = 805

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDEE++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N E  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                ++    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + LD +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD+LF+
Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|86139413|ref|ZP_01057982.1| DNA gyrase subunit B [Roseobacter sp. MED193]
 gi|85823916|gb|EAQ44122.1| DNA gyrase subunit B [Roseobacter sp. MED193]
          Length = 805

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/805 (56%), Positives = 591/805 (73%), Gaps = 4/805 (0%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSDN Q+ + Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L  
Sbjct: 1   MSDNEQSPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAK 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + VT++ D S +V DNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADHVRVTIHADSSVSVYDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI REG  +   F  G     L V G  G+ TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFMAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  +++++TL+ RLREL+FLNS V+I L D+R  E  E  +FY+GG++ FV YLDR 
Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVKIILADERPAERLESELFYEGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+M SP+ I G +D+I +++AM WND YHE+VL FTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 241 KTPVMDSPVYITGEKDDIGVEVAMWWNDSYHESVLPFTNNIPQRDGGTHLAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES 
Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EE+P +AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 VNEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPLRGKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGKS  Y+KD+ +L+DYLI+Q +         S   +   DL   +++A ++ +
Sbjct: 541 PLYKVARGKSEVYLKDQAALDDYLIHQGVEGATLKLG-SGEELVGQDLTRVVEEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F   +       +A ++A RL+ IA + EK W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADRVAARLDLIALEYEKGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++E Y T   L+       I G
Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTKSLQEVYRTSGQLLRRDRAQAIHG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+V++ D   ADDLF+
Sbjct: 720 PLDLLKAIMEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDLVGADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804


>gi|163738140|ref|ZP_02145556.1| DNA gyrase, B subunit [Phaeobacter gallaeciensis BS107]
 gi|163743742|ref|ZP_02151116.1| DNA gyrase subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161383003|gb|EDQ07398.1| DNA gyrase subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161388756|gb|EDQ13109.1| DNA gyrase, B subunit [Phaeobacter gallaeciensis BS107]
          Length = 805

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/805 (56%), Positives = 592/805 (73%), Gaps = 4/805 (0%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS +    + Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ D S +V+DNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADRVVVKIHADSSVSVNDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R+G  +   F  G     L V G  G+ TGTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  ++ ++TL+ RLREL+FLNS V+I LID+R  E  E+ +FY+GG++ FV YLDR 
Sbjct: 181 DTFSNLEYLFETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+M++PI I G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KSPVMEAPIYITGDRDEIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES 
Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EE+P +AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 VNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ +L++YLINQ +   +     S   +   DL   +D+A ++ +
Sbjct: 541 PLYKVSRGKSEVYLKDQAALDEYLINQGVDGAVLKLG-SGEELVGQDLARVVDEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F   +       +A K+A RL+ IA + E+ W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADKVAQRLDLIALEYERGWRGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+N ++E Y    +L+       I G
Sbjct: 660 DHGIRLSRILRGVEELRTLDGPMLRSGEARKTGSFTNSLQETYGATATLVRRDRSQAIHG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+++QRYKGLGEMN  QLWETTL+PD R+LL+V++ D  +ADDLF+
Sbjct: 720 PLGLLKAILEEGEKGLALQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMVEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804


>gi|251793709|ref|YP_003008439.1| DNA gyrase subunit B [Aggregatibacter aphrophilus NJ8700]
 gi|247535106|gb|ACS98352.1| DNA gyrase, B subunit [Aggregatibacter aphrophilus NJ8700]
          Length = 806

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/810 (51%), Positives = 552/810 (68%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS N    +Y A+SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSTNTPE-NYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDDIVVTIHSDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G ++E  +  G    PL V G   N TGT V F PS  
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPKAPLAVIGET-NQTGTTVRFWPSPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  +F YDTL  RLRELSFLNS V I L+D+R+ +       Y+GGI+AFV Y++R K
Sbjct: 179 IFTNIEFEYDTLAKRLRELSFLNSGVSIRLVDERNGKE--DHFHYEGGIQAFVEYINRGK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDGY EN+ CFTNNIPQ+DGGTHL+G R A+TR +
Sbjct: 237 TPIHPKPFYFSAEKDGIGVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGFRGAMTRTL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKSAVESLM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P + KIIV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ER
Sbjct: 357 NEYLQTYLLENPNDVKIIVSKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 417 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++ ++ +  +L        +    +    L N   D L I KL
Sbjct: 537 LYKVKKGKQEQYIKDDEAMAEFELAIALENAALYVSEHAPAMQGLPLENLASDYLGIQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEK-----SEKSW 653
           I      + ++ +++ +     N +  Q+ +   S A  L   L               +
Sbjct: 597 IARLSRYYPESLLKELIYQPALNVQFMQDESAVNSWAGSLVASLTAKETDGKHYSYRLQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +G  +  ++++     G+   + L    I             ++     T   ++    K
Sbjct: 657 NGERHIHEVVLTVRTHGIDIDYFLNFPFITGNEYARLTALGAKLVGLLETNAYVMRGERK 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     +D +    R+G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  A
Sbjct: 717 QAVTSFEQAIDWLMKESRRGLLIQRYKGLGEMNPEQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 777 DQLFTTLMGDEVEPRRDFIESNALRANLDI 806


>gi|258622961|ref|ZP_05717976.1| DNA gyrase, subunit B [Vibrio mimicus VM573]
 gi|258626085|ref|ZP_05720936.1| DNA gyrase, subunit B [Vibrio mimicus VM603]
 gi|258581611|gb|EEW06509.1| DNA gyrase, subunit B [Vibrio mimicus VM603]
 gi|258584744|gb|EEW09478.1| DNA gyrase, subunit B [Vibrio mimicus VM573]
          Length = 805

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGETE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDE+++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N +  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                V+    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + L+ +    R+G+S+QRYKGLGEMN  QLWETT++PDTR +++V I DA  AD+LF+
Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|262172781|ref|ZP_06040459.1| DNA gyrase subunit B [Vibrio mimicus MB-451]
 gi|261893857|gb|EEY39843.1| DNA gyrase subunit B [Vibrio mimicus MB-451]
          Length = 805

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGETE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDE+++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N +  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                ++    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + L+ +    R+G+S+QRYKGLGEMN  QLWETT++PDTR +++V I DA  AD+LF+
Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|261250636|ref|ZP_05943211.1| DNA gyrase subunit B [Vibrio orientalis CIP 102891]
 gi|260939205|gb|EEX95192.1| DNA gyrase subunit B [Vibrio orientalis CIP 102891]
          Length = 805

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/812 (50%), Positives = 549/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIIVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G+ +  ++ +G    PL V G   + TGT++ F PS +
Sbjct: 116 HGVGVSVVNALSEKVTLTIHRGGHTHTQTYHHGEPQAPLAVVGDT-DKTGTQIRFWPSGE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I L D+R  E +     ++GGI+AFV +L+ +K
Sbjct: 175 TFTNTEFHYDILAKRLRELSFLNSGVSIMLKDER-EEDKSDHFMFEGGIQAFVDHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y +  +L             +S   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNAALHVNPEAPALSGEALEKLVQQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L+      + +  + + + +     E   D  +  +   +L  +LN           E  
Sbjct: 594 LVDRMSRRYPRALVHELIYTPRLTAEQCHDASLVDAWTKQLVEQLNAKEVGASQYSFEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  S   +     GV  + VL    I S         S  +E        +     
Sbjct: 654 QHAELGLSLPKIVVRTHGVTHEHVLSIDLINSKEYGKLASLSEALEGLIEDGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              ++     L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQPVSRFVEALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|262166787|ref|ZP_06034524.1| DNA gyrase subunit B [Vibrio mimicus VM223]
 gi|262026503|gb|EEY45171.1| DNA gyrase subunit B [Vibrio mimicus VM223]
          Length = 805

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIHRGGKIHSQTYHHGVPQAPLSVVGETE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDE+++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N +  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                ++    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + L+ +    R+G+S+QRYKGLGEMN  QLWETT++PDTR +++V I DA  AD+LF+
Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|261213260|ref|ZP_05927542.1| DNA gyrase subunit B [Vibrio sp. RC341]
 gi|262402079|ref|ZP_06078643.1| DNA gyrase subunit B [Vibrio sp. RC586]
 gi|260837534|gb|EEX64237.1| DNA gyrase subunit B [Vibrio sp. RC341]
 gi|262351725|gb|EEZ00857.1| DNA gyrase subunit B [Vibrio sp. RC586]
          Length = 805

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLSDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDE+++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N +  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                ++    GV  +++L    I S         S  ++        +        I+ 
Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLAELSEALDGLIEAGAFIKRGERVQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + L+ +    R+G+S+QRYKGLGEMN  QLWETT++PDTR +++V I DA  AD+LF+
Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|229524916|ref|ZP_04414321.1| DNA gyrase subunit B [Vibrio cholerae bv. albensis VL426]
 gi|229338497|gb|EEO03514.1| DNA gyrase subunit B [Vibrio cholerae bv. albensis VL426]
          Length = 805

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I +
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVI 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++
Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDE+++  Y +  ++             ++   L   +       KL++   
Sbjct: 540 KGKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + + +     N E  +D+    +   +L  +LN     + +       +  +N
Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVAIEHNVELN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                ++    GV  +++L    I S         S  +E        +        I+ 
Sbjct: 660 VYLPKIQVRTHGVSHEYLLSADLINSKEYAKLADLSEALEGLIEAGAFIKRGERMQPISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD+LF+
Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805


>gi|153835131|ref|ZP_01987798.1| DNA gyrase, B subunit [Vibrio harveyi HY01]
 gi|148868403|gb|EDL67517.1| DNA gyrase, B subunit [Vibrio harveyi HY01]
          Length = 805

 Score =  961 bits (2484), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/812 (49%), Positives = 548/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V+D+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIVVTIHEDNSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++
Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K
Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESS 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y +  +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L       +    + + + +     E   D     +   +L  +LN           E  
Sbjct: 594 LADRMSRRYPSALVHELIYTPRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  +   +     GV   + L    + S         S  ++        +     
Sbjct: 654 QHEELGLNLPKIIVRTHGVTHDYALSIDLLNSKEYGKLADLSEALDGLLEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              ++   S L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQPVSSFASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|269962694|ref|ZP_06177039.1| DNA gyrase, subunit B [Vibrio harveyi 1DA3]
 gi|269832617|gb|EEZ86731.1| DNA gyrase, subunit B [Vibrio harveyi 1DA3]
          Length = 805

 Score =  961 bits (2484), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/812 (49%), Positives = 548/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V+D+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIVVTIHEDNSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++
Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K
Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y +  +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L       +    + + + +     E   D     +   +L  +LN           E  
Sbjct: 594 LADRMSRRYPSALVHELIYTPRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  +   +     GV   + L    + S         S  ++        +     
Sbjct: 654 QHEELGLNLPKIIVRTHGVTHDYALSIDLLNSKEYGKLADLSEALDGLLEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              ++   S L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQPVSSFASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|159045895|ref|YP_001534689.1| DNA gyrase subunit B [Dinoroseobacter shibae DFL 12]
 gi|157913655|gb|ABV95088.1| DNA gyrase subunit B [Dinoroseobacter shibae DFL 12]
          Length = 805

 Score =  961 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/805 (57%), Positives = 588/805 (73%), Gaps = 4/805 (0%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++  Q    Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MAETAQVAEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ D S +VSDNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADAVNVKIHADSSVSVSDNGRGIPVGVHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R+G  +   F +G     L V G AG+ TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHVARFEHGDTVKHLEVIGDAGDRTGTEVRFMAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             FS  D+++ TL++RLREL+FLNS V+I L D+R  EP    +FY+GG+  FV YLDR 
Sbjct: 181 GTFSNLDYSFKTLENRLRELAFLNSGVRIILEDERPAEPLRSELFYEGGVREFVRYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K   M+ PI I G RD+I I++AM WND YHE VL FTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 241 KTSAMEEPIFITGERDDIGIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 301 INAYAQSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L  W EE+P +AK+IV K+++A++ R+AAR+AR+LTRRK  +D+ASLPGKLADC E
Sbjct: 361 VNEKLGEWFEENPAQAKVIVGKIIEAALAREAARKARELTRRKTAMDVASLPGKLADCQE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SELFLVEGDSAGGSAKQGRSR NQA+LPLRGKILNVERARFD+MLSSQEIGTLIT
Sbjct: 421 KDPAHSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLSSQEIGTLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FDI KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP +I  G+LYI +P
Sbjct: 481 ALGTGIGRDEFDIGKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEIIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGKS  Y+KD+ +LED+LI Q +   +         I+  DL   +D A +  +
Sbjct: 541 PLYKVARGKSEVYLKDQAALEDHLIGQGIEGAVL-RLPGGEEIAGKDLARVVDAARQFKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F+          +A ++A RL+ +A + E+ W G I  
Sbjct: 600 ILDAFPTHYPRPILEQAALAGAFDPGKADADLQKVADQVAARLDLVAVEYERGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + R+ RGV+E   L+G+ + S  ++     S    + Y     L+    ++ I G
Sbjct: 660 DHGIRLSRVLRGVEEIRTLDGAVLRSGEARKLASVSTESRDVYQDPAKLVRKEREVSIHG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P +LL TI   G KG S+QRYKGLGEMN  QLWETTL+P+ R+LL+V+I D + ADD+F+
Sbjct: 720 PLALLSTILEEGEKGQSLQRYKGLGEMNPDQLWETTLDPEARTLLQVQIEDLADADDIFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRR FIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRRAFIQQNALSVENLD 804


>gi|1546916|emb|CAA69221.1| subunit B of DNA gyrase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 804

 Score =  960 bits (2482), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 552/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|27364430|ref|NP_759958.1| DNA gyrase subunit B [Vibrio vulnificus CMCP6]
 gi|37678198|ref|NP_932807.1| DNA gyrase subunit B [Vibrio vulnificus YJ016]
 gi|320157813|ref|YP_004190192.1| DNA gyrase subunit B [Vibrio vulnificus MO6-24/O]
 gi|27360549|gb|AAO09485.1| DNA gyrase, B subunit [Vibrio vulnificus CMCP6]
 gi|37196937|dbj|BAC92778.1| DNA gyrase, subunit B [Vibrio vulnificus YJ016]
 gi|319933125|gb|ADV87989.1| DNA gyrase subunit B [Vibrio vulnificus MO6-24/O]
          Length = 805

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 550/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G+ +  ++ +G+ D PL + G     TGT V F PS++ F+  +
Sbjct: 122 VVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTE-KTGTTVRFWPSAETFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY++
Sbjct: 240 VFHFNAEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VESF+ D L+
Sbjct: 300 KEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESFMADKLN 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDE+++  Y I+ +L             ++   L   +       KL+    
Sbjct: 540 KGKQEQYIKDEDAMNQYQISLALDNAALHVNPDAPALAGEALEKLVQQYNAAIKLVDRMS 599

Query: 606 PNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIA-----EKSEKSWHGSIN 658
             + +  I + +     +      Q    +   +L  +LN           E        
Sbjct: 600 RRYPRALIHELIYVPRLSETQFADQAAMAAWTEQLVTQLNAKEVGASQYSFEIEHDAERG 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                +     GV  ++ L    I S   +     ++ ++        +        +  
Sbjct: 660 LFSPKIVVRTHGVMHEYPLSVDLINSKEYQKLAELADALDGLIEEGAYIQRGERTQPVNS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             S L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR ++RV I DA  AD+LF+
Sbjct: 720 FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMRVTIEDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+EN+L    LD+
Sbjct: 780 TLMGDQVEPRRNFIEENALKVANLDV 805


>gi|261867418|ref|YP_003255340.1| DNA gyrase subunit B [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412750|gb|ACX82121.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 806

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/810 (50%), Positives = 546/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS N    +Y A+SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSTNTPE-TYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDDIVVTIHSDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G ++E  +  G    PL V G     TGT V F PS  
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLAVIGETT-QTGTTVRFWPSPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  +F YD L  RLRELSFLNS V I LID+R+ +       YKGGI+AFV Y++R K
Sbjct: 179 IFTNIEFEYDILAKRLRELSFLNSGVSIRLIDERTDKQ--DHFHYKGGIQAFVEYINRGK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDGY EN+ CFTNNIPQ+DGGTHL+G R A+TR +
Sbjct: 237 TPIHPKPFYFSAEKDGIGVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGFRGAMTRTL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKSAVESLM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P + KIIV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ER
Sbjct: 357 NEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 417 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++ ++ +  +L        +S   +    L+N   + L + K+
Sbjct: 537 LYKVKKGKQEQYIKDDEAMAEFELAIALENAALYVNESAPGMQGVALQNLASEYLAVQKM 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEK-----SEKSW 653
           I      + ++ +++ +            +    S A  L   LN              +
Sbjct: 597 IARLTRYYPESVLKELIYQPALTTALMQQESAVNSWADSLVATLNMKETDGRHYSYRLQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +   N  ++++     G+   + L                  ++ +       ++    K
Sbjct: 657 NAERNLYEVVLTVRTHGIDTDYFLNFQFATGSEYTRLIALGEKLVDLLEGSAYVMRGERK 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + +      ++ +    R+G+ +QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 717 VAVGSFEQAIEWLMRESRRGLMIQRYKGLGEMNPEQLWETTMDPNIRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 777 DQLFTTLMGDEVEPRRDFIESNALRANLDI 806


>gi|170766845|ref|ZP_02901298.1| DNA gyrase, B subunit [Escherichia albertii TW07627]
 gi|170124283|gb|EDS93214.1| DNA gyrase, B subunit [Escherichia albertii TW07627]
          Length = 804

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           +++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKALLKELIYQPTLAEADLSNEQTVTRWVNALVSELNDKEQHGSQWKFDVHANAEKN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|254507351|ref|ZP_05119487.1| DNA gyrase, B subunit [Vibrio parahaemolyticus 16]
 gi|219549811|gb|EED26800.1| DNA gyrase, B subunit [Vibrio parahaemolyticus 16]
          Length = 805

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/812 (50%), Positives = 548/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CQDIVVTIHEDNSVSVRDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS +
Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV +L+ +K
Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLRDER-EEDKQDHFMYEGGIQAFVDHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKVFHFNAEREDGIAVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L EHP EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLVEHPTEAKIVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y +  +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L+      + +  + + + +     E   D     +   +L  +LN          +E  
Sbjct: 594 LVDRMSRRYPRALVHEFIYTPRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYNAEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  S   +     GV  + VL    + S         S  ++        +     
Sbjct: 654 QHAELGLSLPKIVVRTHGVTHEHVLSIDLVNSKEYGKLASLSEALDGLIEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              +      L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQPVASFVDALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|156972780|ref|YP_001443687.1| DNA gyrase subunit B [Vibrio harveyi ATCC BAA-1116]
 gi|156524374|gb|ABU69460.1| hypothetical protein VIBHAR_00445 [Vibrio harveyi ATCC BAA-1116]
          Length = 805

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/812 (49%), Positives = 548/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V+D+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIVVTIHEDNSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++
Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K
Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y +  +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALAGEALEKLVQQYNTGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L       +    + + + +     E   D     +   +L  +LN           E  
Sbjct: 594 LADRMSRRYPSALVHELIYTPRLMAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  +   +     GV   + L    + S         S  ++        +     
Sbjct: 654 QHEELGLNLPKIIVRTHGVTHDYALSIDLLNSKEYGKLADLSEALDGLLEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              ++   S L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQPVSSFASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|331649525|ref|ZP_08350611.1| DNA gyrase, B subunit [Escherichia coli M605]
 gi|330908018|gb|EGH36537.1| DNA gyrase subunit B [Escherichia coli AA86]
 gi|331042023|gb|EGI14167.1| DNA gyrase, B subunit [Escherichia coli M605]
          Length = 804

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKALLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEDDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|83950587|ref|ZP_00959320.1| DNA gyrase subunit B [Roseovarius nubinhibens ISM]
 gi|83838486|gb|EAP77782.1| DNA gyrase subunit B [Roseovarius nubinhibens ISM]
          Length = 805

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/805 (56%), Positives = 586/805 (72%), Gaps = 4/805 (0%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+       Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSEAAAAPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TVT++ D S +VSDNGRGIP DLH+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADHVTVTIHDDSSVSVSDNGRGIPVDLHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F  G     L V G A    GTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAEHLKVVGDANGRKGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  +++++TL+ RLREL+FLNS V+I L D+R  EP E  + Y GG++ FV YLDRH
Sbjct: 181 DTFSNLEYSFETLERRLRELAFLNSGVRIILRDERPAEPLETELHYDGGVKEFVKYLDRH 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P++  PI I G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KSPMIPEPIFITGERDEIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 301 INNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ L+ W EE+P EAK+IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 MNEKLNEWFEENPNEAKMIVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+ELFLVEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTELFLVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIDGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ ++EDYLI Q   + +      +  I+  DL   +++A +  +
Sbjct: 541 PLYKVSRGKSEVYLKDQAAMEDYLIEQGTDDAMLRLGTGEE-ITGRDLVRVVEEARQAKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           +I+ F  ++ +  +EQA I+G F+          +A  +A RL+ IA + E+ W G I  
Sbjct: 600 IIEAFPTHYPRNIVEQATIAGAFSEGRADADLQGVADAVAARLDLIALEYERGWTGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + R+ RGV+E   L+G  +    S+     +  +++ Y T  +L+       I G
Sbjct: 660 DHGIRLTRMLRGVEEVRTLDGPILRGGESRRIGQMTKVLQDVYRTQATLVRKDRVQAING 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LLD I   G KG+S+QRYKGLGEMN  QLWETTL+P+ R+LL+VK+ D ++ADDLF+
Sbjct: 720 PLDLLDAILKEGEKGLSLQRYKGLGEMNPDQLWETTLDPEARTLLQVKVNDVAEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQEN+L    LD
Sbjct: 780 KLMGDVVEPRREFIQENALNVENLD 804


>gi|317046242|ref|YP_004113890.1| DNA gyrase subunit B [Pantoea sp. At-9b]
 gi|316947859|gb|ADU67334.1| DNA gyrase, B subunit [Pantoea sp. At-9b]
          Length = 802

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/804 (50%), Positives = 545/804 (67%), Gaps = 10/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCSDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G +++ ++++G+   PL V G   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELTIRRDGKVHQQTYVHGVPQAPLAVVGDT-DATGTRVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLEDKRDDKK--DHYHYEGGIKAFVEYLNRNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         S   +    L + + +     ++IK   
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNASAPALGGEPLESLVANFNSTQRMIKRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW-----HGSINNS 660
             +    +   +     +  SD+         L   L                +   N  
Sbjct: 599 RRYPLALLRALIYHPTLSDLSDEVAVQGWLDGLVAYLTEREAHGSTYVAQVQANREQNLF 658

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +++    GV   + L+   I     +       ++         +     +  +    
Sbjct: 659 EPVLRVRTHGVDTDYPLDSEFIAGPEYRKICELGEQLRGLIEEDAFIERGERRQPVASFE 718

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             +D +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD LF+ L
Sbjct: 719 QAIDWLVKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAIAADQLFTTL 778

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 779 MGDAVEPRRAFIEENALKAANIDI 802


>gi|26250440|ref|NP_756480.1| DNA gyrase subunit B [Escherichia coli CFT073]
 gi|91213221|ref|YP_543207.1| DNA gyrase subunit B [Escherichia coli UTI89]
 gi|237703499|ref|ZP_04533980.1| subunit B [Escherichia sp. 3_2_53FAA]
 gi|26110870|gb|AAN83054.1|AE016769_169 DNA gyrase subunit B [Escherichia coli CFT073]
 gi|91074795|gb|ABE09676.1| DNA gyrase subunit B [Escherichia coli UTI89]
 gi|226902763|gb|EEH89022.1| subunit B [Escherichia sp. 3_2_53FAA]
          Length = 805

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/808 (50%), Positives = 551/808 (68%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I
Sbjct: 1   MMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  IVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+ 
Sbjct: 121 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTN 179

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+
Sbjct: 180 VTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPI 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y
Sbjct: 238 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ 
Sbjct: 298 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP 
Sbjct: 358 LAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY 
Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I  
Sbjct: 538 VKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656
               + K  +++ +           D++      + L + LN   +     K +   +  
Sbjct: 598 MERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
            N  + +V+    GV   + L+   I     +       ++         +     +  +
Sbjct: 658 QNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD L
Sbjct: 718 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803
           F+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 778 FTTLMGDAVEPRRAFIEENALKAANIDI 805


>gi|1617217|emb|CAA69665.1| subunit B of DNA gyrase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 804

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS QE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSFQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|293390763|ref|ZP_06635097.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951297|gb|EFE01416.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 806

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/810 (50%), Positives = 545/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS N    +Y A+SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSTNTPE-TYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDDIVVTIHSDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G ++E  +  G    PLVV G     TGT V F PS  
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLVVIGETT-QTGTTVRFWPSPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  +F YD L  RLRELSFLNS V I LID+R+ +       Y+GGI+AFV Y++R K
Sbjct: 179 IFTNIEFEYDILAKRLRELSFLNSGVSIRLIDERTDKQ--DHFHYEGGIQAFVEYINRGK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++A++WNDGY EN+ CFTNNIPQ+DGGTHL+G R A+TR +
Sbjct: 237 TPIHPKSFYFSAEKDGIGVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGFRGAMTRTL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKSAVESLM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P + KIIV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ER
Sbjct: 357 NEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 417 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++ ++ +  +L        +S   +    L+N   + L + K+
Sbjct: 537 LYKVKKGKQEQYIKDDEAMAEFELAIALENAALYVNESAPGMQGVALQNLASEYLAVQKM 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEK-----SEKSW 653
           I      + ++ +++ +            +    S A  L   LN              +
Sbjct: 597 IARLTRYYPESVLKELIYQPALTTALMQQESAVNSWADSLVATLNMKETDGRHYSYRLQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +   N  ++++     G+   + L                  ++         ++    K
Sbjct: 657 NAERNLYEVVLTVRTHGIDTDYFLNFQFATGSEYTRLIALGEKLVGLLEDSAYVMRGERK 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + +      ++ +    R+G+ +QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 717 VAVGSFEQAIEWLMKESRRGLMIQRYKGLGEMNPEQLWETTMDPNIRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 777 DQLFTTLMGDEVEPRRDFIESNALRANLDI 806


>gi|86355681|ref|YP_467573.1| DNA gyrase subunit B [Rhizobium etli CFN 42]
 gi|86279783|gb|ABC88846.1| DNA gyrase subunit B protein [Rhizobium etli CFN 42]
          Length = 811

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 523/806 (64%), Positives = 651/806 (80%), Gaps = 5/806 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++N  ++ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 7   TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           DI+TVTLN DGS TV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 67  DIVTVTLNPDGSVTVTDNGRGIPTDIHSGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PL VTG A + TGTEV+F+PSS+ 
Sbjct: 127 GVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGDAPDSTGTEVSFMPSSET 186

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+EAFVSYLDR KK
Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLADKRHSDIKQEEMRYDGGLEAFVSYLDRAKK 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           PL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ 
Sbjct: 247 PLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN
Sbjct: 307 SYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ W EEHP EAKI+V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADCSERD
Sbjct: 367 EALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL
Sbjct: 427 PAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D F+  KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +PPL
Sbjct: 487 GTGIGKDEFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPL 546

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + RGKS+QY+KDE++LE+YLI Q L +       S  V +  DLR  I DAL++  L+
Sbjct: 547 YKVARGKSVQYLKDEKALEEYLIAQGLEDAAL-RLGSGEVRTGQDLREVILDALRMRALL 605

Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
            + +  +++  +EQA I+G  N E  SDQ    +LAS++A RL+ IAE++E+ W G +  
Sbjct: 606 DNLHSRYNRAVVEQAAIAGALNAELVSDQARAQALASEVAGRLDIIAEETERGWQGDLAT 665

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  + ++R+ RGV+E  VL+ + I S  +++    + R++E Y T  SL      I+I+G
Sbjct: 666 DGGLRLERMVRGVKEVVVLDMALIGSSDARHIDQLTARLKEIYQTPPSLHRREGDIEISG 725

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD LF+
Sbjct: 726 PRALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVADATDADGLFA 785

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           RLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 786 RLMGDEVEPRREFIQDNALSVANLDI 811


>gi|312882232|ref|ZP_07741978.1| DNA gyrase subunit B [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370076|gb|EFP97582.1| DNA gyrase subunit B [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 805

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/812 (49%), Positives = 546/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIIVTIHEDNSVSVRDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R GNI+  ++ +G    PL V G    +TGTE+ F PS++
Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGNIHSQTYHHGEPQAPLAVLGDT-QNTGTEIRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I LID+R  +       ++GGI+AFV +L+ +K
Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREDDKS-DHFMFEGGIQAFVDHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P++         R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIDKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLAEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  +Y+KDE+++ DY  + +L             +S   L   +       K
Sbjct: 534 PLYKVKKGKQERYIKDEDAMNDYQFSLALENATLHVNAQAPAMSGEALEKLVKQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L+      + +  + + + S          ++   +   +L  +LN           E  
Sbjct: 594 LVDRMSRRYPRALMHELIYSPRLTANQCHSEDDVQTWTKQLVEQLNAKEVGASQYSFEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  +   +     GV  ++ L      S         S  +         +     
Sbjct: 654 QHVELGLNLPKIIVRTHGVTHEYALSIDLFNSKEYAKLADLSEALNGLIEEDAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              +      L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQPVASFVEALEWLMKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|329297784|ref|ZP_08255120.1| DNA gyrase subunit B [Plautia stali symbiont]
          Length = 802

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/804 (50%), Positives = 547/804 (68%), Gaps = 10/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSNIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G  ++ ++++G+   PL VTG   + TGT V F PS D F+   
Sbjct: 122 VVNALSQKLELIIRRDGKEHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           DF Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+R+KKP+  
Sbjct: 181 DFEYEILAKRLRELSFLNSGVSIRLEDKRDDKN--DHYHYEGGIKAFVEYLNRNKKPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ +N+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NVFYFCTEKDGIGVEVALQWNDGFQKNIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+++++ Y I  +L         S   +    L + + +     K+IK   
Sbjct: 539 KGKQEQYIKDDDAMDQYQIAIALDGATLHTNASAPALGGEPLESLVAEYNSTQKMIKRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSINNS 660
                  +   V     +  SDQ    +    L   LN           +   +      
Sbjct: 599 RRFPSALLRALVYHPTLSDLSDQTAVTAWLESLVAYLNEREAHGSSYVAQVRENREQQRF 658

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +++    GV   + L+   I     +        +         +     +  +    
Sbjct: 659 EPVLRVRTHGVDTDYPLDSEFIDGAEYRKICALGAHLRGLIEEDAYIERGERRQPVASFE 718

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             +D +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD LF+ L
Sbjct: 719 QAIDWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIAADQLFTTL 778

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 779 MGDAVEPRRAFIEENALKAANIDI 802


>gi|209396545|ref|YP_002273225.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217325601|ref|ZP_03441685.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. TW14588]
 gi|254038916|ref|ZP_04872968.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|209157945|gb|ACI35378.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217321822|gb|EEC30246.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. TW14588]
 gi|226838881|gb|EEH70908.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
          Length = 805

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/808 (50%), Positives = 551/808 (68%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I
Sbjct: 1   MMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  IVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+ 
Sbjct: 121 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTN 179

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+
Sbjct: 180 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPI 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y
Sbjct: 238 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ 
Sbjct: 298 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP 
Sbjct: 358 LAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY 
Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I  
Sbjct: 538 VKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656
               + K  +++ +           D++      + L + LN   +     K +   +  
Sbjct: 598 MERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
            N  + +V+    GV   + L+   I     +       ++         +     +  +
Sbjct: 658 QNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD L
Sbjct: 718 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803
           F+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 778 FTTLMGDAVEPRRAFIEENALKAANIDI 805


>gi|320193755|gb|EFW68388.1| DNA gyrase subunit B [Escherichia coli WV_060327]
          Length = 804

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +   + K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNAMQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|110644042|ref|YP_671772.1| DNA gyrase subunit B [Escherichia coli 536]
 gi|117625975|ref|YP_859298.1| DNA gyrase subunit B [Escherichia coli APEC O1]
 gi|191170615|ref|ZP_03032168.1| DNA gyrase, B subunit [Escherichia coli F11]
 gi|218560774|ref|YP_002393687.1| DNA gyrase subunit B [Escherichia coli S88]
 gi|218691987|ref|YP_002400199.1| DNA gyrase subunit B [Escherichia coli ED1a]
 gi|227883920|ref|ZP_04001725.1| DNA gyrase subunit B [Escherichia coli 83972]
 gi|300983650|ref|ZP_07176691.1| DNA gyrase, B subunit [Escherichia coli MS 200-1]
 gi|300984543|ref|ZP_07177033.1| DNA gyrase, B subunit [Escherichia coli MS 45-1]
 gi|301047517|ref|ZP_07194593.1| DNA gyrase, B subunit [Escherichia coli MS 185-1]
 gi|331660041|ref|ZP_08360979.1| DNA gyrase, B subunit [Escherichia coli TA206]
 gi|110345634|gb|ABG71871.1| DNA gyrase subunit B [Escherichia coli 536]
 gi|115515099|gb|ABJ03174.1| DNA gyrase subunit B [Escherichia coli APEC O1]
 gi|190909423|gb|EDV69009.1| DNA gyrase, B subunit [Escherichia coli F11]
 gi|218367543|emb|CAR05328.1| DNA gyrase, subunit B [Escherichia coli S88]
 gi|218429551|emb|CAR10515.2| DNA gyrase, subunit B [Escherichia coli ED1a]
 gi|227839198|gb|EEJ49664.1| DNA gyrase subunit B [Escherichia coli 83972]
 gi|294493517|gb|ADE92273.1| DNA gyrase, B subunit [Escherichia coli IHE3034]
 gi|300300577|gb|EFJ56962.1| DNA gyrase, B subunit [Escherichia coli MS 185-1]
 gi|300306873|gb|EFJ61393.1| DNA gyrase, B subunit [Escherichia coli MS 200-1]
 gi|300408376|gb|EFJ91914.1| DNA gyrase, B subunit [Escherichia coli MS 45-1]
 gi|307555839|gb|ADN48614.1| DNA gyrase subunit B [Escherichia coli ABU 83972]
 gi|307628775|gb|ADN73079.1| DNA gyrase subunit B [Escherichia coli UM146]
 gi|315285496|gb|EFU44941.1| DNA gyrase, B subunit [Escherichia coli MS 110-3]
 gi|315292857|gb|EFU52209.1| DNA gyrase, B subunit [Escherichia coli MS 153-1]
 gi|323949942|gb|EGB45826.1| hypothetical protein ERKG_03785 [Escherichia coli H252]
 gi|323955007|gb|EGB50785.1| hypothetical protein ERLG_03725 [Escherichia coli H263]
 gi|324012740|gb|EGB81959.1| DNA gyrase, B subunit [Escherichia coli MS 60-1]
 gi|331053256|gb|EGI25289.1| DNA gyrase, B subunit [Escherichia coli TA206]
          Length = 804

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|256021283|ref|ZP_05435148.1| DNA gyrase subunit B [Shigella sp. D9]
 gi|331670543|ref|ZP_08371382.1| DNA gyrase, B subunit [Escherichia coli TA271]
 gi|332282514|ref|ZP_08394927.1| DNA gyrase subunit B [Shigella sp. D9]
 gi|331062605|gb|EGI34525.1| DNA gyrase, B subunit [Escherichia coli TA271]
 gi|332104866|gb|EGJ08212.1| DNA gyrase subunit B [Shigella sp. D9]
          Length = 804

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVRTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|293413153|ref|ZP_06655819.1| hypothetical protein ECEG_04465 [Escherichia coli B354]
 gi|291468286|gb|EFF10781.1| hypothetical protein ECEG_04465 [Escherichia coli B354]
          Length = 804

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEDDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|170680955|ref|YP_001746027.1| DNA gyrase subunit B [Escherichia coli SMS-3-5]
 gi|170518673|gb|ACB16851.1| DNA gyrase, B subunit [Escherichia coli SMS-3-5]
          Length = 804

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +          SD++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|331685423|ref|ZP_08386009.1| DNA gyrase, B subunit [Escherichia coli H299]
 gi|331077794|gb|EGI49006.1| DNA gyrase, B subunit [Escherichia coli H299]
          Length = 804

 Score =  957 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|312967891|ref|ZP_07782103.1| DNA gyrase, B subunit [Escherichia coli 2362-75]
 gi|312287452|gb|EFR15360.1| DNA gyrase, B subunit [Escherichia coli 2362-75]
          Length = 804

 Score =  957 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNNKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|315296897|gb|EFU56185.1| DNA gyrase, B subunit [Escherichia coli MS 16-3]
          Length = 804

 Score =  957 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +          SD++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|15833888|ref|NP_312661.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. Sakai]
 gi|30065007|ref|NP_839178.1| DNA gyrase subunit B [Shigella flexneri 2a str. 2457T]
 gi|49176395|ref|YP_026241.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. MG1655]
 gi|56480411|ref|NP_709501.2| DNA gyrase subunit B [Shigella flexneri 2a str. 301]
 gi|74314013|ref|YP_312432.1| DNA gyrase subunit B [Shigella sonnei Ss046]
 gi|89110314|ref|AP_004094.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. W3110]
 gi|110807611|ref|YP_691131.1| DNA gyrase subunit B [Shigella flexneri 5 str. 8401]
 gi|157155879|ref|YP_001465184.1| DNA gyrase subunit B [Escherichia coli E24377A]
 gi|157163179|ref|YP_001460497.1| DNA gyrase subunit B [Escherichia coli HS]
 gi|168748585|ref|ZP_02773607.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4113]
 gi|168753588|ref|ZP_02778595.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168759885|ref|ZP_02784892.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168766186|ref|ZP_02791193.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168772266|ref|ZP_02797273.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4196]
 gi|168779921|ref|ZP_02804928.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168785654|ref|ZP_02810661.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC869]
 gi|168798734|ref|ZP_02823741.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC508]
 gi|170018065|ref|YP_001723019.1| DNA gyrase subunit B [Escherichia coli ATCC 8739]
 gi|188496243|ref|ZP_03003513.1| DNA gyrase, B subunit [Escherichia coli 53638]
 gi|191165787|ref|ZP_03027625.1| DNA gyrase, B subunit [Escherichia coli B7A]
 gi|193063868|ref|ZP_03044955.1| DNA gyrase, B subunit [Escherichia coli E22]
 gi|193069227|ref|ZP_03050184.1| DNA gyrase, B subunit [Escherichia coli E110019]
 gi|194428131|ref|ZP_03060675.1| DNA gyrase, B subunit [Escherichia coli B171]
 gi|194435834|ref|ZP_03067937.1| DNA gyrase, B subunit [Escherichia coli 101-1]
 gi|195936320|ref|ZP_03081702.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. EC4024]
 gi|208808465|ref|ZP_03250802.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208812166|ref|ZP_03253495.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208821994|ref|ZP_03262314.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209921176|ref|YP_002295260.1| DNA gyrase subunit B [Escherichia coli SE11]
 gi|218556264|ref|YP_002389178.1| DNA gyrase subunit B [Escherichia coli IAI1]
 gi|218697421|ref|YP_002405088.1| DNA gyrase subunit B [Escherichia coli 55989]
 gi|238902789|ref|YP_002928585.1| DNA gyrase, subunit B [Escherichia coli BW2952]
 gi|253771439|ref|YP_003034270.1| DNA gyrase subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163650|ref|YP_003046758.1| DNA gyrase subunit B [Escherichia coli B str. REL606]
 gi|254795702|ref|YP_003080539.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. TW14359]
 gi|256025570|ref|ZP_05439435.1| DNA gyrase subunit B [Escherichia sp. 4_1_40B]
 gi|260846516|ref|YP_003224294.1| DNA gyrase subunit B [Escherichia coli O103:H2 str. 12009]
 gi|260857890|ref|YP_003231781.1| DNA gyrase subunit B [Escherichia coli O26:H11 str. 11368]
 gi|260870430|ref|YP_003236832.1| DNA gyrase subunit B [Escherichia coli O111:H- str. 11128]
 gi|261225852|ref|ZP_05940133.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258897|ref|ZP_05951430.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. FRIK966]
 gi|291285118|ref|YP_003501936.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. CB9615]
 gi|293417172|ref|ZP_06659799.1| hypothetical protein ECDG_04325 [Escherichia coli B185]
 gi|293464023|ref|ZP_06664437.1| hypothetical protein ECCG_04105 [Escherichia coli B088]
 gi|300815054|ref|ZP_07095279.1| DNA gyrase, B subunit [Escherichia coli MS 107-1]
 gi|300824316|ref|ZP_07104432.1| DNA gyrase, B subunit [Escherichia coli MS 119-7]
 gi|300903026|ref|ZP_07120968.1| DNA gyrase, B subunit [Escherichia coli MS 84-1]
 gi|300917471|ref|ZP_07134131.1| DNA gyrase, B subunit [Escherichia coli MS 115-1]
 gi|300925523|ref|ZP_07141398.1| DNA gyrase, B subunit [Escherichia coli MS 182-1]
 gi|300932330|ref|ZP_07147598.1| DNA gyrase, B subunit [Escherichia coli MS 187-1]
 gi|301020912|ref|ZP_07184967.1| DNA gyrase, B subunit [Escherichia coli MS 69-1]
 gi|301305955|ref|ZP_07212037.1| DNA gyrase, B subunit [Escherichia coli MS 124-1]
 gi|301325009|ref|ZP_07218559.1| DNA gyrase, B subunit [Escherichia coli MS 78-1]
 gi|301644371|ref|ZP_07244372.1| DNA gyrase, B subunit [Escherichia coli MS 146-1]
 gi|307140399|ref|ZP_07499755.1| DNA gyrase subunit B [Escherichia coli H736]
 gi|307313232|ref|ZP_07592857.1| DNA gyrase, B subunit [Escherichia coli W]
 gi|309795752|ref|ZP_07690167.1| DNA gyrase, B subunit [Escherichia coli MS 145-7]
 gi|312972009|ref|ZP_07786183.1| DNA gyrase, B subunit [Escherichia coli 1827-70]
 gi|331644423|ref|ZP_08345552.1| DNA gyrase, B subunit [Escherichia coli H736]
 gi|331655359|ref|ZP_08356358.1| DNA gyrase, B subunit [Escherichia coli M718]
 gi|331665349|ref|ZP_08366250.1| DNA gyrase, B subunit [Escherichia coli TA143]
 gi|331679797|ref|ZP_08380467.1| DNA gyrase, B subunit [Escherichia coli H591]
 gi|84028819|sp|P0AES7|GYRB_ECO57 RecName: Full=DNA gyrase subunit B
 gi|84028820|sp|P0AES6|GYRB_ECOLI RecName: Full=DNA gyrase subunit B
 gi|84028821|sp|P0AES8|GYRB_SHIFL RecName: Full=DNA gyrase subunit B
 gi|41646|emb|CAA27871.1| unnamed protein product [Escherichia coli K-12]
 gi|13364109|dbj|BAB38057.1| DNA gyrase subunit B GyrB [Escherichia coli O157:H7 str. Sakai]
 gi|30043268|gb|AAP18989.1| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a
           str. 2457T]
 gi|48994957|gb|AAT48201.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. MG1655]
 gi|56383962|gb|AAN45208.2| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a
           str. 301]
 gi|73857490|gb|AAZ90197.1| DNA gyrase subunit B [Shigella sonnei Ss046]
 gi|85676345|dbj|BAE77595.1| DNA gyrase, subunit B [Escherichia coli str. K12 substr. W3110]
 gi|110617159|gb|ABF05826.1| DNA gyrase subunit B [Shigella flexneri 5 str. 8401]
 gi|157068859|gb|ABV08114.1| DNA gyrase, B subunit [Escherichia coli HS]
 gi|157077909|gb|ABV17617.1| DNA gyrase, B subunit [Escherichia coli E24377A]
 gi|169752993|gb|ACA75692.1| DNA gyrase, B subunit [Escherichia coli ATCC 8739]
 gi|187771557|gb|EDU35401.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4196]
 gi|188016891|gb|EDU55013.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4113]
 gi|188491442|gb|EDU66545.1| DNA gyrase, B subunit [Escherichia coli 53638]
 gi|189002544|gb|EDU71530.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189359308|gb|EDU77727.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189364475|gb|EDU82894.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189369611|gb|EDU88027.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189374237|gb|EDU92653.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC869]
 gi|189378801|gb|EDU97217.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC508]
 gi|190904111|gb|EDV63822.1| DNA gyrase, B subunit [Escherichia coli B7A]
 gi|192930583|gb|EDV83190.1| DNA gyrase, B subunit [Escherichia coli E22]
 gi|192957551|gb|EDV87997.1| DNA gyrase, B subunit [Escherichia coli E110019]
 gi|194413889|gb|EDX30167.1| DNA gyrase, B subunit [Escherichia coli B171]
 gi|194425377|gb|EDX41361.1| DNA gyrase, B subunit [Escherichia coli 101-1]
 gi|208728266|gb|EDZ77867.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208733443|gb|EDZ82130.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208742117|gb|EDZ89799.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209754140|gb|ACI75377.1| DNA repair and genetic recombination protein RecF [Escherichia
           coli]
 gi|209754142|gb|ACI75378.1| DNA repair and genetic recombination protein RecF [Escherichia
           coli]
 gi|209754144|gb|ACI75379.1| DNA repair and genetic recombination protein RecF [Escherichia
           coli]
 gi|209754146|gb|ACI75380.1| DNA repair and genetic recombination protein RecF [Escherichia
           coli]
 gi|209914435|dbj|BAG79509.1| DNA gyrase subunit B [Escherichia coli SE11]
 gi|218354153|emb|CAV00752.1| DNA gyrase, subunit B [Escherichia coli 55989]
 gi|218363033|emb|CAR00672.1| DNA gyrase, subunit B [Escherichia coli IAI1]
 gi|222035413|emb|CAP78158.1| DNA gyrase subunit B [Escherichia coli LF82]
 gi|238860819|gb|ACR62817.1| DNA gyrase, subunit B [Escherichia coli BW2952]
 gi|242379238|emb|CAQ34043.1| DNA gyrase, subunit B, subunit of DNA gyrase [Escherichia coli
           BL21(DE3)]
 gi|253322483|gb|ACT27085.1| DNA gyrase, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975551|gb|ACT41222.1| DNA gyrase subunit B [Escherichia coli B str. REL606]
 gi|253979707|gb|ACT45377.1| DNA gyrase subunit B [Escherichia coli BL21(DE3)]
 gi|254595102|gb|ACT74463.1| DNA gyrase, subunit B [Escherichia coli O157:H7 str. TW14359]
 gi|257756539|dbj|BAI28041.1| DNA gyrase subunit B [Escherichia coli O26:H11 str. 11368]
 gi|257761663|dbj|BAI33160.1| DNA gyrase subunit B [Escherichia coli O103:H2 str. 12009]
 gi|257766786|dbj|BAI38281.1| DNA gyrase subunit B [Escherichia coli O111:H- str. 11128]
 gi|260447283|gb|ACX37705.1| DNA gyrase, B subunit [Escherichia coli DH1]
 gi|281603074|gb|ADA76058.1| DNA gyrase subunit B [Shigella flexneri 2002017]
 gi|290764991|gb|ADD58952.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. CB9615]
 gi|291321655|gb|EFE61091.1| hypothetical protein ECCG_04105 [Escherichia coli B088]
 gi|291431203|gb|EFF04196.1| hypothetical protein ECDG_04325 [Escherichia coli B185]
 gi|300398379|gb|EFJ81917.1| DNA gyrase, B subunit [Escherichia coli MS 69-1]
 gi|300404932|gb|EFJ88470.1| DNA gyrase, B subunit [Escherichia coli MS 84-1]
 gi|300415275|gb|EFJ98585.1| DNA gyrase, B subunit [Escherichia coli MS 115-1]
 gi|300418363|gb|EFK01674.1| DNA gyrase, B subunit [Escherichia coli MS 182-1]
 gi|300459916|gb|EFK23409.1| DNA gyrase, B subunit [Escherichia coli MS 187-1]
 gi|300523203|gb|EFK44272.1| DNA gyrase, B subunit [Escherichia coli MS 119-7]
 gi|300531946|gb|EFK53008.1| DNA gyrase, B subunit [Escherichia coli MS 107-1]
 gi|300838806|gb|EFK66566.1| DNA gyrase, B subunit [Escherichia coli MS 124-1]
 gi|300848103|gb|EFK75863.1| DNA gyrase, B subunit [Escherichia coli MS 78-1]
 gi|301077312|gb|EFK92118.1| DNA gyrase, B subunit [Escherichia coli MS 146-1]
 gi|306906915|gb|EFN37424.1| DNA gyrase, B subunit [Escherichia coli W]
 gi|308120631|gb|EFO57893.1| DNA gyrase, B subunit [Escherichia coli MS 145-7]
 gi|309704146|emb|CBJ03493.1| DNA gyrase subunit B [Escherichia coli ETEC H10407]
 gi|310334386|gb|EFQ00591.1| DNA gyrase, B subunit [Escherichia coli 1827-70]
 gi|312948266|gb|ADR29093.1| DNA gyrase subunit B [Escherichia coli O83:H1 str. NRG 857C]
 gi|313647707|gb|EFS12155.1| DNA gyrase, B subunit [Shigella flexneri 2a str. 2457T]
 gi|315063005|gb|ADT77332.1| DNA gyrase, subunit B [Escherichia coli W]
 gi|315138283|dbj|BAJ45442.1| DNA gyrase subunit B [Escherichia coli DH1]
 gi|315254614|gb|EFU34582.1| DNA gyrase, B subunit [Escherichia coli MS 85-1]
 gi|315618595|gb|EFU99181.1| DNA gyrase, B subunit [Escherichia coli 3431]
 gi|320191201|gb|EFW65851.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. EC1212]
 gi|320201273|gb|EFW75854.1| DNA gyrase subunit B [Escherichia coli EC4100B]
 gi|320639424|gb|EFX09039.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. G5101]
 gi|320655479|gb|EFX23414.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661105|gb|EFX28541.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666231|gb|EFX33237.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. LSU-61]
 gi|323161049|gb|EFZ46968.1| DNA gyrase, B subunit [Escherichia coli E128010]
 gi|323164689|gb|EFZ50484.1| DNA gyrase, B subunit [Shigella sonnei 53G]
 gi|323173317|gb|EFZ58946.1| DNA gyrase, B subunit [Escherichia coli LT-68]
 gi|323177711|gb|EFZ63295.1| DNA gyrase, B subunit [Escherichia coli 1180]
 gi|323182494|gb|EFZ67898.1| DNA gyrase, B subunit [Escherichia coli 1357]
 gi|323189566|gb|EFZ74846.1| DNA gyrase, B subunit [Escherichia coli RN587/1]
 gi|323376401|gb|ADX48669.1| DNA gyrase, B subunit [Escherichia coli KO11]
 gi|323934950|gb|EGB31328.1| hypothetical protein ERCG_03773 [Escherichia coli E1520]
 gi|323939117|gb|EGB35331.1| hypothetical protein ERDG_04214 [Escherichia coli E482]
 gi|323944171|gb|EGB40251.1| hypothetical protein EREG_04262 [Escherichia coli H120]
 gi|323971176|gb|EGB66422.1| hypothetical protein ERHG_02793 [Escherichia coli TA007]
 gi|324018433|gb|EGB87652.1| DNA gyrase, B subunit [Escherichia coli MS 117-3]
 gi|324115949|gb|EGC09875.1| hypothetical protein ERBG_04036 [Escherichia coli E1167]
 gi|326337252|gb|EGD61087.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. 1044]
 gi|326341623|gb|EGD65412.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. 1125]
 gi|331036717|gb|EGI08943.1| DNA gyrase, B subunit [Escherichia coli H736]
 gi|331047374|gb|EGI19452.1| DNA gyrase, B subunit [Escherichia coli M718]
 gi|331057859|gb|EGI29845.1| DNA gyrase, B subunit [Escherichia coli TA143]
 gi|331072969|gb|EGI44294.1| DNA gyrase, B subunit [Escherichia coli H591]
 gi|332345690|gb|AEE59024.1| DNA gyrase, B subunit GyrB [Escherichia coli UMNK88]
 gi|332750520|gb|EGJ80929.1| DNA gyrase, B subunit [Shigella flexneri K-671]
 gi|332750691|gb|EGJ81099.1| DNA gyrase, B subunit [Shigella flexneri 4343-70]
 gi|332751679|gb|EGJ82077.1| DNA gyrase, B subunit [Shigella flexneri 2747-71]
 gi|332764070|gb|EGJ94307.1| DNA gyrase, B subunit [Shigella flexneri 2930-71]
 gi|332996043|gb|EGK15670.1| DNA gyrase, B subunit [Shigella flexneri VA-6]
 gi|332997433|gb|EGK17049.1| DNA gyrase, B subunit [Shigella flexneri K-218]
 gi|332997865|gb|EGK17473.1| DNA gyrase, B subunit [Shigella flexneri K-272]
 gi|333013244|gb|EGK32617.1| DNA gyrase, B subunit [Shigella flexneri K-304]
 gi|333013660|gb|EGK33025.1| DNA gyrase, B subunit [Shigella flexneri K-227]
          Length = 804

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|218551229|ref|YP_002385021.1| DNA gyrase subunit B [Escherichia fergusonii ATCC 35469]
 gi|218358771|emb|CAQ91428.1| DNA gyrase, subunit B [Escherichia fergusonii ATCC 35469]
 gi|323965760|gb|EGB61211.1| hypothetical protein ERJG_02832 [Escherichia coli M863]
 gi|323975234|gb|EGB70338.1| hypothetical protein ERFG_03936 [Escherichia coli TW10509]
 gi|324111596|gb|EGC05577.1| hypothetical protein ERIG_03892 [Escherichia fergusonii B253]
 gi|325499506|gb|EGC97365.1| DNA gyrase subunit B [Escherichia fergusonii ECD227]
 gi|327250842|gb|EGE62544.1| DNA gyrase, B subunit [Escherichia coli STEC_7v]
          Length = 804

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNADQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|254486166|ref|ZP_05099371.1| DNA gyrase, B subunit [Roseobacter sp. GAI101]
 gi|214043035|gb|EEB83673.1| DNA gyrase, B subunit [Roseobacter sp. GAI101]
          Length = 804

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/805 (56%), Positives = 588/805 (73%), Gaps = 5/805 (0%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD+ Q    Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSDDKQIPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + VT++ D S +VSDNGRGIP  +H+ EG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADAVNVTIHEDNSVSVSDNGRGIPVGIHQGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI REG  +   F  G     L V G   + TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTTEHLTVVGPT-DRTGTEVRFMAST 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             FS  +++++TL+ RLREL+FLNS V+I L D+R  EP    +FY+GG++ FV YLDR 
Sbjct: 180 STFSNLEYSFETLEKRLRELAFLNSGVRIILTDERPAEPLRSELFYEGGVKEFVKYLDRS 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +M  PI I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 240 KTSVMPEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 299

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 300 INNYAQSSGIAKKEKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 359

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L+ W EE+P EA+I+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE
Sbjct: 360 VSEKLAEWFEENPTEARIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 420 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI NG LYI +P
Sbjct: 480 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIENGHLYIAQP 539

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ ++EDYLI Q +   +     +   I+  DL   +D A ++ +
Sbjct: 540 PLYKVSRGKSEVYLKDQAAMEDYLIQQGIDGAVL-RQGNGEEITGQDLARVVDLARQMRR 598

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           +++ F  ++ +  +EQA I+G F           +A K+A RLN IA + E+ W G I  
Sbjct: 599 VLEAFPTHYPRHILEQAAIAGAFVPGVVDADLQGVADKVAERLNLIALEWERGWQGRITQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  + + RI RGV+E   L+G  + S  +K    F+  +++ Y     L+       I G
Sbjct: 659 DHGVRLARILRGVEEVRTLDGRMLRSGEAKRSGGFTQHLQDVYRMPAKLVRKDRSQMIYG 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LLD I + G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+V++ D ++ADDLF+
Sbjct: 719 PMDLLDAILAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMAEADDLFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 779 KLMGDVVEPRREFIQQNALNVENLD 803


>gi|293407339|ref|ZP_06651261.1| gyrB [Escherichia coli FVEC1412]
 gi|298383080|ref|ZP_06992675.1| DNA gyrase subunit B [Escherichia coli FVEC1302]
 gi|300896028|ref|ZP_07114589.1| DNA gyrase, B subunit [Escherichia coli MS 198-1]
 gi|291425630|gb|EFE98666.1| gyrB [Escherichia coli FVEC1412]
 gi|298276916|gb|EFI18434.1| DNA gyrase subunit B [Escherichia coli FVEC1302]
 gi|300360088|gb|EFJ75958.1| DNA gyrase, B subunit [Escherichia coli MS 198-1]
          Length = 804

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEDDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|331675189|ref|ZP_08375942.1| DNA gyrase, B subunit [Escherichia coli TA280]
 gi|284923782|emb|CBG36880.1| DNA gyrase subunit B [Escherichia coli 042]
 gi|331067634|gb|EGI39036.1| DNA gyrase, B subunit [Escherichia coli TA280]
          Length = 804

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHANAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|300940884|ref|ZP_07155411.1| DNA gyrase, B subunit [Escherichia coli MS 21-1]
 gi|300454365|gb|EFK17858.1| DNA gyrase, B subunit [Escherichia coli MS 21-1]
          Length = 804

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +          SD++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|83855146|ref|ZP_00948676.1| DNA gyrase subunit B [Sulfitobacter sp. NAS-14.1]
 gi|83941669|ref|ZP_00954131.1| DNA gyrase subunit B [Sulfitobacter sp. EE-36]
 gi|83842989|gb|EAP82156.1| DNA gyrase subunit B [Sulfitobacter sp. NAS-14.1]
 gi|83847489|gb|EAP85364.1| DNA gyrase subunit B [Sulfitobacter sp. EE-36]
          Length = 804

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/805 (57%), Positives = 588/805 (73%), Gaps = 5/805 (0%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD  Q    Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSDTDQLPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + VT++ D S +VSDNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADAVNVTIHDDSSVSVSDNGRGIPVGIHQEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI REG  +   F  G     L V G     TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTTKHLEVVGPTE-RTGTEVRFMAST 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + FS  D++++TL+ RLREL+FLNS V+I L D+R  EP    +FY+GG++ FV YLDR 
Sbjct: 180 ETFSNLDYSFETLEKRLRELAFLNSGVRIILTDERPAEPLRTELFYEGGVKEFVKYLDRS 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +M  PI I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH +G R ALTR 
Sbjct: 240 KTSVMPEPIFISGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHTAGFRGALTRT 299

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 300 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 359

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EE+P  AKI+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE
Sbjct: 360 VNEKLAEWFEENPQIAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 420 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI NG LYI +P
Sbjct: 480 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIENGHLYIAQP 539

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ ++EDYLI Q +   +     +   I+  DL   +D A ++ +
Sbjct: 540 PLYKVSRGKSEVYLKDQAAMEDYLIQQGIEGAMLKQG-NGEEITGQDLARVVDLARQMRR 598

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           +++ F  ++ +  +EQA I+G F   +       +A K+A RLN IA + E+ W G I  
Sbjct: 599 VLEAFPTHYPRHILEQAAIAGAFVPGAVDADLQGVADKVAERLNLIALEWERGWQGRITQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  + + RI RGV+E   L+G  + S  +K    F+  +++ Y T   L+       I G
Sbjct: 659 DHGVRLARILRGVEEVRTLDGRMLRSGEAKRSGGFTEHLQDVYGTPAKLVRKDRSQLIHG 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL+ I + G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+VK+ D ++ADDLF+
Sbjct: 719 PMDLLEAILAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVADMAEADDLFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 779 KLMGDVVEPRREFIQQNALSVENLD 803


>gi|323496930|ref|ZP_08101958.1| DNA gyrase subunit B [Vibrio sinaloensis DSM 21326]
 gi|323318004|gb|EGA70987.1| DNA gyrase subunit B [Vibrio sinaloensis DSM 21326]
          Length = 805

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/812 (50%), Positives = 546/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIIVTIHEDCSVSVRDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS +
Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV +L+ +K
Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLRDER-EEDKNDHFMYEGGIQAFVEHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKVFHFNAEREDGIAVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  
Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L EHP EAK +  K++DA+  RDAAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLVEHPAEAKTVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y ++ +L             +S   L + +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVSLALDNASLHVNAEAPALSGEALESLVKQYNSGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L+      + ++ + + + S     E   D     +   +L  +LN           E  
Sbjct: 594 LVDRMSRRYPRSLVHELIYSPRLTAEQCHDATAVEAWTKQLVEQLNAKEVGASQYSFEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  +   +     GV   F L      S         S  ++        +     
Sbjct: 654 QHAELGLNLPKIIVRTHGVTHDFALSVDLFNSKEYGKLADLSEALDGLIEDGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              ++     L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQPVSSFVDALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|218707345|ref|YP_002414864.1| DNA gyrase subunit B [Escherichia coli UMN026]
 gi|218434442|emb|CAR15370.1| DNA gyrase, subunit B [Escherichia coli UMN026]
          Length = 804

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEN--HFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEDDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|82779228|ref|YP_405577.1| DNA gyrase subunit B [Shigella dysenteriae Sd197]
 gi|81243376|gb|ABB64086.1| DNA gyrase subunit B [Shigella dysenteriae Sd197]
 gi|281180753|dbj|BAI57083.1| DNA gyrase subunit B [Escherichia coli SE15]
 gi|324008035|gb|EGB77254.1| DNA gyrase, B subunit [Escherichia coli MS 57-2]
          Length = 804

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +          SD++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|163802136|ref|ZP_02196031.1| DNA gyrase subunit B [Vibrio sp. AND4]
 gi|159173941|gb|EDP58751.1| DNA gyrase subunit B [Vibrio sp. AND4]
          Length = 805

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/812 (49%), Positives = 548/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V+D+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIVVTIHEDNSVSVTDDGRGIPTEMHSEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G+ +  ++ +G    PL V G   + TGT++ F PS++
Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGHTHTQTYHHGDPQAPLAVVGDT-DQTGTQIRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I L+D+R  E +     Y+GGI+AFV +L+ +K
Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLVDER-EEDKSDHFMYEGGIQAFVEHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIVEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y +  +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMTQYQVALALDNASLHVNAQAPALAGEALEKLVKQYNAGTK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L       +    + + V +     E   D     +   +L  +LN           E  
Sbjct: 594 LADRMSRRYPSALVHEFVYTPRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSYEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  +   +     GV   + L    + S         S  ++        +     
Sbjct: 654 QHEELGLNLPKIIVRTHGVTHNYALSIDLLNSKEYAKLADLSEALDGLLEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              +T   S L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQPVTSFASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|215489039|ref|YP_002331470.1| DNA gyrase subunit B [Escherichia coli O127:H6 str. E2348/69]
 gi|215267111|emb|CAS11558.1| DNA gyrase, subunit B [Escherichia coli O127:H6 str. E2348/69]
          Length = 804

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHCQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNNKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|114762139|ref|ZP_01441607.1| DNA gyrase subunit B [Pelagibaca bermudensis HTCC2601]
 gi|114545163|gb|EAU48166.1| DNA gyrase subunit B [Roseovarius sp. HTCC2601]
          Length = 805

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/805 (56%), Positives = 584/805 (72%), Gaps = 4/805 (0%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++       Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MAEPAGAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ D S +V DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HADFVRVKIHADNSVSVRDNGRGIPVDMHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F +G     L V G A  + GTEV FL S+
Sbjct: 121 LHGVGVSVVNALSVWLELRIWRNGKEHYAKFSHGETVEHLRVVGDAEGEQGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + FS  DF + TL+ RLREL+FLNS V+I L D+R  EP    + Y+GG++ FV YLDR 
Sbjct: 181 ETFSNLDFEFATLEKRLRELAFLNSGVRIILEDERPAEPLHTELHYEGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+M  PI + G +D I +++AM WND Y+E VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KQPMMPEPIYMTGEKDGIGVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +T Y   S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ 
Sbjct: 301 LTRYATDSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EEHP EAK++V K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 VNEKLTEWFEEHPNEAKMVVGKIVEAALAREAARKARELTRRKNPMDVNFLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+ELF+VEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTELFIVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKII+MTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIDKLRYHKIILMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PL+ + RG+S  YVKD+ +L+DYLI Q +         +  VI+  DL   ID+A ++ +
Sbjct: 541 PLFKVARGRSEVYVKDQAALDDYLIQQGVDGAHL-TLGNGEVITGQDLVRVIDEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F   + +     +A K+A RL+ IA + EK W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVESDLQGVADKVAERLDLIALEYEKGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++  Y T   L     +  I G
Sbjct: 660 DRGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQALQTVYATPAVLERKDRRQAIYG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL+ I   G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+V++ D ++ADD+F+
Sbjct: 720 PLGLLEAILEEGEKGLSLQRYKGLGEMNPGQLWETTLDPDARTLLQVRVDDMTEADDIFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804


>gi|148980121|ref|ZP_01815901.1| DNA gyrase subunit B [Vibrionales bacterium SWAT-3]
 gi|145961422|gb|EDK26728.1| DNA gyrase subunit B [Vibrionales bacterium SWAT-3]
          Length = 805

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/812 (50%), Positives = 543/812 (66%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSDN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +V D+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CNDIIVTIHEDNSVSVRDDGRGIPTEIHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS +
Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIGDT-DQTGTEIRFWPSEE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F+YD L  RLRELSFLNS V I LID+R  E +     ++GGI+AFV +L+ +K
Sbjct: 175 TFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGIQAFVDHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  
Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y +  +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNAALHVNPGAPALAGEALEKLVQQYNSGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L+      +    + + +       E   D+    +   +L  +LN           E  
Sbjct: 594 LVGRMSRRYPHALMHEMIYMPRLTAEQCHDESAVEAWGKQLVEQLNAKEVGASQYSLEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  S   +     GV  +  L      S         S  ++        +     
Sbjct: 654 KHEELGLSLPKIVVRTHGVTHEHALSVDLFNSKEYGKLASLSEALDGLIEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              ++     L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQAVSNFVEALNWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVSNLDV 805


>gi|306815948|ref|ZP_07450086.1| DNA gyrase subunit B [Escherichia coli NC101]
 gi|305850344|gb|EFM50801.1| DNA gyrase subunit B [Escherichia coli NC101]
          Length = 804

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L+DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLLDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|242237464|ref|YP_002985645.1| DNA gyrase subunit B [Dickeya dadantii Ech703]
 gi|242129521|gb|ACS83823.1| DNA gyrase, B subunit [Dickeya dadantii Ech703]
          Length = 803

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/804 (50%), Positives = 543/804 (67%), Gaps = 9/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG ++   + +G    PL V G A   TGT V F PS + F+   
Sbjct: 122 VVNALSEKLELVIRREGKLHRQEYKHGEPQAPLAVVGDAS-TTGTTVRFWPSLETFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV YL+R+K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDER-EENKADHFHYEGGIKAFVDYLNRNKTPIHP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y+E
Sbjct: 240 QVFYFSAEKDGIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYME 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +ND L 
Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNDRLV 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 360 DYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G ++I +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L             ++   L   + +   + KLI    
Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAHAPALAGEPLEKLVAEHSGVQKLIDRLE 599

Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEKSWHGSI---NNS 660
             + K  +   V          ++          L N L+   +                
Sbjct: 600 RRYPKALLNALVYQPALTEALLKDRAQVQQWIETLVNHLHEQEQHGSAYSFVIRDLPERH 659

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +++    GV   + L+ + +     +       ++         +     K  +    
Sbjct: 660 EPVLRVRTHGVDSDYALDLAFVQGNEYRRINQLGEKLRGLIEDGAFIERGERKQPVASFE 719

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD+LF+ L
Sbjct: 720 QALEWLTKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAMAADELFTTL 779

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 780 MGDAVEPRRAFIEENALKAANIDI 803


>gi|218702548|ref|YP_002410177.1| DNA gyrase subunit B [Escherichia coli IAI39]
 gi|218372534|emb|CAR20409.1| DNA gyrase, subunit B [Escherichia coli IAI39]
          Length = 804

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +          SD++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNADQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|84501255|ref|ZP_00999460.1| DNA gyrase subunit B [Oceanicola batsensis HTCC2597]
 gi|84390546|gb|EAQ03034.1| DNA gyrase subunit B [Oceanicola batsensis HTCC2597]
          Length = 805

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/806 (55%), Positives = 587/806 (72%), Gaps = 4/806 (0%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++  Q++ +YDADSI++LKGLDAV+KRP MYIGDTD  SGLHHMIYE +DN IDE+L G
Sbjct: 1   MAEPQQSAPAYDADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEAVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ D S +V DNGRGIP ++H EEGISAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HADFVKVKIHADNSVSVRDNGRGIPVNMHAEEGISAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS WL+LRI R+G  + + F + +   PL V G A  + GTEV FL S+
Sbjct: 121 LHGVGISVVNALSDWLELRIWRDGKEHYVRFEDSVTVEPLKVVGDADGEKGTEVRFLSST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             FS  +++Y TL+ RLREL+FLNS V+I L D+R  EP    +FY+GG++ FV YLDR 
Sbjct: 181 QTFSNLNYDYATLEKRLRELAFLNSGVRIVLEDERPAEPLRTELFYEGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ +M  PI ++G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KQAMMSEPIHVEGERDGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +T Y  +S  +K++K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ 
Sbjct: 301 LTRYATESGVAKREKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ W EE+P EAK+IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 VGEKLAEWFEENPNEAKMIVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+MLSSQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLSSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FDI+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ +LEDYLI+Q     +    +    I+  DL   + +A    +
Sbjct: 541 PLYKVSRGKSEVYLKDQAALEDYLIDQGTEGALLRLGNGDE-IAGPDLVRVVTEARTARR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658
            +  F  ++ +  +EQA I+G F           +A  +A RL+ IA + E+ W G    
Sbjct: 600 YLDSFPTHYPRHILEQAAIAGAFVAGQADADLQGVADNVAARLDQIALEYERGWQGRQTQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + R+ RGV+E   L+G ++ S  ++     ++ ++E Y    +L+     + I G
Sbjct: 660 DKGIRLSRVLRGVEEVRTLDGPALRSGEARRLGSITSGLQEIYSQPATLVRRDRSLPIYG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G +G+ +QRYKGLGEMN  QLWETTL+P+ R+LL+V++ D ++ADDLF+
Sbjct: 720 PLDLLQAILDEGERGLQLQRYKGLGEMNPEQLWETTLDPEARTLLQVRVEDMAEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           +LMGD VEPRREFIQ N+L    LDI
Sbjct: 780 KLMGDVVEPRREFIQANALNVENLDI 805


>gi|262392780|ref|YP_003284634.1| DNA gyrase subunit B [Vibrio sp. Ex25]
 gi|262336374|gb|ACY50169.1| DNA gyrase subunit B [Vibrio sp. Ex25]
          Length = 805

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/812 (49%), Positives = 549/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIVVTIHEDNSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PS++
Sbjct: 116 HGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV +L+ +K
Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDEE++  Y ++ +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L +     +    + + + +     E   D  +  +   +L  +LN           E  
Sbjct: 594 LAERMSRRYPSALVNELIYTPRLTPEQCHDASVVEAWTKQLIEQLNAKEVGASQYSYEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  +   +     GV  +  +    + S         S  ++        +     
Sbjct: 654 QHEELGLNLPKIVVRTHGVTHEHAISIDFLNSKEYGKLADLSEALDGLLEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
            + +      LD +     +G+S QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TMPVASFAEALDWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|163745039|ref|ZP_02152399.1| DNA gyrase subunit B [Oceanibulbus indolifex HEL-45]
 gi|161381857|gb|EDQ06266.1| DNA gyrase subunit B [Oceanibulbus indolifex HEL-45]
          Length = 804

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/805 (57%), Positives = 591/805 (73%), Gaps = 5/805 (0%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD  Q    Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSDTAQTPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TVT++ D S +VSDNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADAVTVTIHEDSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI REG  +   F  G     L V G   + TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGDT-DRTGTEVRFMAST 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS +++ ++TL+ RLREL+FLNS V+I L D+R  EP    ++Y GG++ FV YLDRH
Sbjct: 180 DTFSNREYIFETLEKRLRELAFLNSGVRIILTDERPVEPLRTELYYDGGVKEFVKYLDRH 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +M  PI I G RD+I I++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 240 KTSVMPEPIFITGERDDIGIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 299

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y + S  +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 300 INGYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 359

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EE+P EAK IV K+++A+  R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 360 VNEKLAEWFEENPAEAKQIVGKIVEAAQAREAARKARELTRRKSAMDVNFLAGKLKDCSE 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 420 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+++KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI +G LYI +P
Sbjct: 480 ALGTGIGRDEFNLSKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEHGHLYIAQP 539

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ ++EDYLI Q +   +     +   IS  DL   +D A ++ +
Sbjct: 540 PLYKVSRGKSEVYLKDQAAMEDYLIQQGVDGAML-RQGNGEEISGQDLTRVVDMARQLRR 598

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           +++ F  ++ +  +EQA I+G F           +A K+A+RLN IA + E+ W G I  
Sbjct: 599 VLEAFPTHYPRHIVEQAAIAGAFVDGVVDSDLQGVADKVADRLNLIALEYERGWQGRITQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++E Y    +L+       I G
Sbjct: 659 DHGIRLARILRGVEEVRTLDGRMMRSGEARKSGTFTKHLQEVYDQPATLVRKDRSQLIHG 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LLD IF+ G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+V++ D ++ADDLF+
Sbjct: 719 PMDLLDAIFAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMAEADDLFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 779 KLMGDVVEPRREFIQQNALSVENLD 803


>gi|209754138|gb|ACI75376.1| DNA repair and genetic recombination protein RecF [Escherichia
           coli]
 gi|320644867|gb|EFX13903.1| DNA gyrase subunit B [Escherichia coli O157:H- str. 493-89]
 gi|320650131|gb|EFX18627.1| DNA gyrase subunit B [Escherichia coli O157:H- str. H 2687]
          Length = 804

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEVLEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|290547|gb|AAA62050.1| DNA gyrase, subunit B [Escherichia coli]
          Length = 804

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+A RRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAPRRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHXSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRXFIEENALKAANIDI 804


>gi|300956295|ref|ZP_07168597.1| DNA gyrase, B subunit [Escherichia coli MS 175-1]
 gi|300316882|gb|EFJ66666.1| DNA gyrase, B subunit [Escherichia coli MS 175-1]
          Length = 804

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS QE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSYQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|311277336|ref|YP_003939567.1| DNA gyrase, B subunit [Enterobacter cloacae SCF1]
 gi|308746531|gb|ADO46283.1| DNA gyrase, B subunit [Enterobacter cloacae SCF1]
          Length = 804

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/806 (49%), Positives = 548/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRDNKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         +   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHCNANAPALAGEPLERLVSEFNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + +  +   +            ++      ++L + LN   +     K +   +    
Sbjct: 599 RRYPRALLNALIYQPTLTESDLGSEQTATRWVNQLVSELNENEQHGSQWKFDIRENAEQQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   ++ +   +     +       ++         +     +  +  
Sbjct: 659 QFEPVIRVRTHGVDTDYLFDHEFVTGGEYRRICTLGEKLRGLIEDDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|91228345|ref|ZP_01262273.1| DNA gyrase subunit B [Vibrio alginolyticus 12G01]
 gi|269965275|ref|ZP_06179396.1| DNA gyrase, subunit B [Vibrio alginolyticus 40B]
 gi|91188105|gb|EAS74409.1| DNA gyrase subunit B [Vibrio alginolyticus 12G01]
 gi|269830076|gb|EEZ84304.1| DNA gyrase, subunit B [Vibrio alginolyticus 40B]
          Length = 805

 Score =  955 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/812 (49%), Positives = 549/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIVVTIHEDNSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PS++
Sbjct: 116 HGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV +L+ +K
Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDEE++  Y ++ +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L +     +    + + + +     E   D  +  +   +L  +LN           E  
Sbjct: 594 LAERMSRRYPSALVNELIYTPRLTPEQCHDASVVEAWTKQLIEQLNAKEVGASQYSYEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  +   +     GV  +  +    + S         S  ++        +     
Sbjct: 654 QHEELGLNLPKIVVRTHGVTHEHAISIDFLNSKEYGKLADLSEALDGLLEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
            + +      LD +     +G+S QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TMPVANFAEALDWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|149204288|ref|ZP_01881255.1| DNA gyrase subunit B [Roseovarius sp. TM1035]
 gi|149142173|gb|EDM30220.1| DNA gyrase subunit B [Roseovarius sp. TM1035]
          Length = 805

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/805 (55%), Positives = 572/805 (71%), Gaps = 4/805 (0%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+       Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSEPAAAPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + VT++ D S +VSDNGRGIP D+H+ EG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADAVNVTIHADSSVSVSDNGRGIPVDIHEGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F  G     L V G A    GTEV FL S+
Sbjct: 121 LHGVGVSVVNALSEWLELRIWRNGKEHYARFEGGFTVESLRVVGDANGRKGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + FS  ++ ++TL+ RLREL+FLNS V+I L D+R  EP    +FY+GG++ FV YLDRH
Sbjct: 181 ETFSNLEYIFETLEKRLRELAFLNSGVRIILTDERPTEPLRSELFYEGGVKEFVKYLDRH 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P M  PI I G RD+I I++AM WND YHE VL FTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 241 KSPAMPDPIFITGERDDIGIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 301 INTYAQTSGIAKKEKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ W EE+P  A++IV K+++A+  R+AAR+AR+LTRRK  +D+  L GKL DCS 
Sbjct: 361 VGEKLAEWFEENPQVARVIVGKIIEAAHAREAARKARELTRRKNPMDVNFLAGKLKDCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+ELFLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTELFLVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FDI KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFDIKKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGKS  Y+KD+  LEDYLI Q  ++       S   I+  DL   +++A +  +
Sbjct: 541 PLYKVMRGKSEVYLKDQGGLEDYLIAQGTTDAAL-RLGSGEEIAGPDLVRVVEEARQARR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658
           +++ F  ++ +  +EQA I+  F           +A  +A RL+ I+ + E+ W G    
Sbjct: 600 ILEAFPTHYPRHILEQAAIAEAFLPGRVDSDLQGVADTVAARLDMISNEYERGWQGRPTQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  + + R  RGV+E   L+G  +    ++     +  + + Y    +LI       I G
Sbjct: 660 DKGLRLSRTVRGVEEMRTLDGPVLRGGEARKLAQLTAPLRDIYRERATLIRKDRAQAIYG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LLD I   G KG+S+QRYKGLGEMN +QLWETTL+P+ R+LL+VKI D ++ADDLF+
Sbjct: 720 PLDLLDAILKEGEKGLSLQRYKGLGEMNPNQLWETTLDPEARTLLQVKIDDVAEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQDNALNVANLD 804


>gi|190889652|ref|YP_001976194.1| DNA gyrase, B subunit [Rhizobium etli CIAT 652]
 gi|190694931|gb|ACE89016.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652]
 gi|327191183|gb|EGE58226.1| DNA gyrase protein, B subunit [Rhizobium etli CNPAF512]
          Length = 811

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 519/806 (64%), Positives = 652/806 (80%), Gaps = 5/806 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++N  ++ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 7   TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           DI+TV+LN DGS TV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 67  DIVTVSLNPDGSVTVTDNGRGIPTDIHSGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PL VTG A + TGTEV+F+PSS+ 
Sbjct: 127 GVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGDAPDATGTEVSFMPSSET 186

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+EAFV+YLDR KK
Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLSDKRHSDIKQEEMRYDGGLEAFVAYLDRAKK 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           PL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ 
Sbjct: 247 PLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN
Sbjct: 307 SYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + LS W EEHP EAKI+V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADCSERD
Sbjct: 367 EALSTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL
Sbjct: 427 PAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D F+  KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +PPL
Sbjct: 487 GTGIGKDEFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPL 546

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + RGKS+QY+KDE++LE+YLI Q L +       S  V +  DLR  I DAL++  L+
Sbjct: 547 YKVARGKSVQYLKDEKALEEYLIGQGLEDAAL-RLGSGEVRTGQDLREVILDALRMRALL 605

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGSI-N 658
            + +  +++  +EQA I+G  N E   +     +LAS++A+RL+ IAE++E+ W G + +
Sbjct: 606 DNLHSRYNRAVVEQAAIAGALNAELVSDAARARALASEVASRLDIIAEETERGWQGDLTS 665

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  + ++R+ RGV+E  VL+ + I S  +++    ++R++E Y T  SL      I+I+G
Sbjct: 666 DGGLRLERMVRGVKEIVVLDMALIGSSDARHIDQLTSRLKEIYQTPPSLHRREGDIEISG 725

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD LF+
Sbjct: 726 PRALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVADATDADGLFA 785

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           RLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 786 RLMGDEVEPRREFIQDNALSVANLDI 811


>gi|15804293|ref|NP_290332.1| DNA gyrase subunit B [Escherichia coli O157:H7 EDL933]
 gi|25292809|pir||D86054 hypothetical protein gyrB [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12518538|gb|AAG58896.1|AE005601_2 DNA gyrase subunit B, type II topoisomerase, ATPase activity
           [Escherichia coli O157:H7 str. EDL933]
          Length = 804

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 548/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K+ DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIXDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEG SAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGXSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|194431109|ref|ZP_03063402.1| DNA gyrase, B subunit [Shigella dysenteriae 1012]
 gi|194420564|gb|EDX36640.1| DNA gyrase, B subunit [Shigella dysenteriae 1012]
 gi|320180040|gb|EFW54982.1| DNA gyrase subunit B [Shigella boydii ATCC 9905]
 gi|332084055|gb|EGI89262.1| DNA gyrase, B subunit [Shigella dysenteriae 155-74]
 gi|332084889|gb|EGI90072.1| DNA gyrase, B subunit [Shigella boydii 5216-82]
          Length = 804

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L    I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLGHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|260774984|ref|ZP_05883884.1| DNA gyrase subunit B [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609074|gb|EEX35233.1| DNA gyrase subunit B [Vibrio coralliilyticus ATCC BAA-450]
          Length = 805

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/812 (50%), Positives = 545/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIIVTIHEDCSVSVRDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS +
Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLSVIGET-DKTGTEIRFWPSEE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I L+D+R  E +     Y+GGI+AFV +L+ +K
Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLVDER-EEDKSDHFMYEGGIQAFVEHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKVFHFNAEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLVEHPTEAKAVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y +  +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALAGEALEKLVQQYNSGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L++     +    + + + +     E   D     +   +L  +LN           E  
Sbjct: 594 LVERMSRRYPHALMHELIYTPRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  +   +     GV  +  L    I S         S  +         +     
Sbjct: 654 QHAELGLNLPKIVVRTHGVTHEHALSIDLINSKEYGKLADLSEALNGLIEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              ++     L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQPVSSFVEALNWLVKESRRGLSLQRYKGLGEMNPEQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|255261451|ref|ZP_05340793.1| DNA gyrase, B subunit [Thalassiobium sp. R2A62]
 gi|255103786|gb|EET46460.1| DNA gyrase, B subunit [Thalassiobium sp. R2A62]
          Length = 805

 Score =  954 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/805 (56%), Positives = 588/805 (73%), Gaps = 4/805 (0%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSDN Q N  Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSDNEQSNEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + VT++ D S +VSDNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADHVAVTIHADHSVSVSDNGRGIPVGMHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LR+ R+   +   F +G     L V G A    GTEV FL S+
Sbjct: 121 LHGVGVSVVNALSVWLELRVWRDDKEHYAKFSHGETVEHLRVEGEAKGRKGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  +++++ L+ RLREL+FLNS V+I L D+R  E  E T+FY GG++ FV YLDR 
Sbjct: 181 DTFSNLEYSFEILERRLRELAFLNSGVKIILRDERPAEALETTLFYDGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +++ PI I G +D+I I++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KTAMIEDPIFIVGEKDDIGIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES 
Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ LS W EE+P EA++IV K+++A++ R+AAR+AR+LTRRK  LD+  L GKL DCSE
Sbjct: 361 MNEKLSEWFEENPNEARLIVSKIIEAAVAREAARKARELTRRKTALDVNFLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F I KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFKIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RG+S  Y+KD+ +L+DYLI+Q +   +         ++  DL   +++A ++ +
Sbjct: 541 PLYKVARGRSEVYLKDQAALDDYLIDQGIDGAVLKLASGAR-MTGADLLRVVNEARQLRR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           +++ F  ++ +  IEQA I+G F   +       +A  +A RLN IA + E+ W G I  
Sbjct: 600 VLEAFPTHYPRHIIEQAAIAGAFEQGAVDRDLQGVADHVAERLNLIALEYERGWAGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + R+ RGV+E   L+G  + S  ++    F+  ++E Y    +L        I G
Sbjct: 660 DHGIRLARLLRGVEEVRTLDGPMLRSGEARRTGTFTESLQEVYGQPATLHRKDRSQMIMG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL+ I   G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+VK+ D ++ADDLF+
Sbjct: 720 PLDLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVEDMAEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804


>gi|308047726|ref|YP_003911292.1| DNA gyrase subunit B [Ferrimonas balearica DSM 9799]
 gi|307629916|gb|ADN74218.1| DNA gyrase subunit B [Ferrimonas balearica DSM 9799]
          Length = 805

 Score =  954 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/808 (49%), Positives = 547/808 (67%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MAENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ DGS +V D+GRGIP D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  VVTIHADGSVSVQDDGRGIPVDMHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L ++R+G+I+E  +  G    PL   G   + TGT + F PSS IFS 
Sbjct: 121 VSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVGDT-DKTGTTIRFWPSSQIFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI AFV +L+++K P+ 
Sbjct: 180 TTFHYDILAKRLRELSFLNSGVSIRLVDERDAKE--DHYCYEGGIHAFVEFLNQNKTPVH 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q        R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + +Y
Sbjct: 238 QQVFHFTIEREDGIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNNY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 298 MDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEQ 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP 
Sbjct: 358 LQDFLLENPGDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G 
Sbjct: 418 LSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY 
Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  +Y+KDE +L +YL + +L             IS   L   ++   ++  +++ 
Sbjct: 538 VKKGKQERYIKDEAALTEYLTSLALDNASLHVNQDAPGISGEHLERLVNQYREVQDVVER 597

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEK-----SEKSWHGS 656
                 K+ + + V     +  S ++         +L + LN +  +      E      
Sbjct: 598 QSRRFPKSLLNKLVYVPGLSEGSLKDKAEITEWTERLVSELNELDLEGATYRYELQEESE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     GV+  ++L    I S          N I +       +      + +
Sbjct: 658 RGLWLPKLVLRQHGVESNYLLTFDFINSSDYGRIVALGNAIGDLMEEGAYVRRGERTLPV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 L  + +  ++G+ +QRYKGLGEMN  QLWETT++P+TR +LRV I DA  AD L
Sbjct: 718 DSFEKGLTWLMNESKRGLYIQRYKGLGEMNPDQLWETTMDPETRRMLRVTIEDAIGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENS-LPSALDI 803
           F+ LMGD+VEPRR+FI++N+ L + LD+
Sbjct: 778 FTTLMGDQVEPRRDFIEKNALLVANLDV 805


>gi|323959764|gb|EGB55414.1| hypothetical protein ERGG_03715 [Escherichia coli H489]
          Length = 804

 Score =  954 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FERALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|117619604|ref|YP_854532.1| DNA gyrase, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561011|gb|ABK37959.1| DNA gyrase, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 803

 Score =  954 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/810 (50%), Positives = 535/810 (66%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ +I++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSENT----YDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ DGS +V DNGRGIP D+H EEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 57  CSDIQVKIHSDGSVSVRDNGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 117 HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 176 IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 234 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 294 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 354 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 414 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP +I  G++YI +PP
Sbjct: 474 LGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KDE++L  Y    +L        +S   I    L   ++    +  L
Sbjct: 534 LYKVKKGKQEQYLKDEDALLQYQTAMALDGATLHVNESAPAIGGEALERLVNQHRSVSHL 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFN--CESDQEINVSLASKLANRLNF----IAEKSEKSWH 654
           I        +  + Q +     N    S +   ++    +   LN     I  + +    
Sbjct: 594 ITRMSRRAPEAVLTQLIYQPELNEALLSSESDLLAWCQSMEAVLNESNHGIQYQMQVRHD 653

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                          GV  ++ L    + S   +        I         +       
Sbjct: 654 EERRLFVPHAVVRQHGVDREYPLSYDFLQSSEYRQLVSLGKEIANLIEEGGYIKRGEKVK 713

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +      ++ +   G++GI +QRYKGLGEMN  QLWETT++P+ R +LRV I DA  AD
Sbjct: 714 PVASFVEAVEWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRMLRVTIDDAVGAD 773

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LFS LMGD VEPRR+FI+ N+L    LD+
Sbjct: 774 QLFSTLMGDAVEPRRDFIETNALRVANLDV 803


>gi|300947540|ref|ZP_07161717.1| DNA gyrase, B subunit [Escherichia coli MS 116-1]
 gi|300452877|gb|EFK16497.1| DNA gyrase, B subunit [Escherichia coli MS 116-1]
          Length = 804

 Score =  954 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAE IMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEGIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|82546037|ref|YP_409984.1| DNA gyrase subunit B [Shigella boydii Sb227]
 gi|187731654|ref|YP_001882467.1| DNA gyrase subunit B [Shigella boydii CDC 3083-94]
 gi|81247448|gb|ABB68156.1| DNA gyrase subunit B [Shigella boydii Sb227]
 gi|187428646|gb|ACD07920.1| DNA gyrase, B subunit [Shigella boydii CDC 3083-94]
 gi|320174827|gb|EFW49950.1| DNA gyrase subunit B [Shigella dysenteriae CDC 74-1112]
 gi|332089417|gb|EGI94521.1| DNA gyrase, B subunit [Shigella boydii 3594-74]
          Length = 804

 Score =  954 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADLLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|161505634|ref|YP_001572746.1| DNA gyrase subunit B [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866981|gb|ABX23604.1| hypothetical protein SARI_03810 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 804

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G I+   + +G+   PL +TG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQLYEHGVPQAPLAITGDT-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   +S   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALSGEALEKLVSEYNAAQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           +++      + L   LN   +     K +   +   N
Sbjct: 599 RRFPKALLKELVYQPTLTEADLSNEQTVTRWVNALITELNEKEQHGSQWKFDVYTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   +     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICQLGEKLRGLIEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|283836132|ref|ZP_06355873.1| hypothetical protein CIT292_10552 [Citrobacter youngae ATCC 29220]
 gi|291068320|gb|EFE06429.1| DNA gyrase, B subunit [Citrobacter youngae ATCC 29220]
          Length = 804

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 553/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG +++ ++++G+   PL VTG     TGT+V F PS + F+   
Sbjct: 122 VVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGETE-VTGTQVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   +S   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALSGESLEKLVSEYNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           +++      + L   LN   +     K +   +   N
Sbjct: 599 RRFPKALLKELVYQPTLPEADLANEQNVTRWVNALITELNEKEQHGSLWKFDVHHNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   +VL+   +             ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYVLDHEFVTGGEYHRICTLGEKLRGLIEDDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLQKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|28896788|ref|NP_796393.1| DNA gyrase subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839074|ref|ZP_01991741.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363487|ref|ZP_05776320.1| DNA gyrase, B subunit [Vibrio parahaemolyticus K5030]
 gi|260876546|ref|ZP_05888901.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|260897307|ref|ZP_05905803.1| DNA gyrase, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901413|ref|ZP_05909808.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|29611941|sp|O51859|GYRB_VIBPA RecName: Full=DNA gyrase subunit B
 gi|28804996|dbj|BAC58277.1| DNA gyrase, subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747457|gb|EDM58411.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|308087831|gb|EFO37526.1| DNA gyrase, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|308090372|gb|EFO40067.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|308107191|gb|EFO44731.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113561|gb|EFO51101.1| DNA gyrase, B subunit [Vibrio parahaemolyticus K5030]
 gi|328471241|gb|EGF42143.1| DNA gyrase subunit B [Vibrio parahaemolyticus 10329]
          Length = 805

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/812 (50%), Positives = 550/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT++ F PS++
Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV +L+ +K
Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDEE++  Y ++ +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
           L       + +  + + + +     E   D     +   +L  +LN           E  
Sbjct: 594 LADRMSRRYPRALVHELIYTSRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSYEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  S   +     GV  +  L    + S         S  ++        +     
Sbjct: 654 LHAELGLSLPKIIVRTHGVTHEHALSVDFLNSKEYGKLADLSEVLDGLLEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
            + ++     L+ +     +G+S QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TLPVSSFAEALEWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRHFIEENALKVANLDV 805


>gi|145297128|ref|YP_001139969.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142849900|gb|ABO88221.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 804

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/810 (50%), Positives = 536/810 (66%), Gaps = 13/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ +I++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSENT----YDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ DGS +V DNGRGIP D+H+EEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 57  CSDILVKIHSDGSVSVRDNGRGIPVDMHEEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 117 HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 177 IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 235 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 355 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP +I  G++YI +PP
Sbjct: 475 LGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KDE++L  Y    +L        +S   I    L   ++    +  L
Sbjct: 535 LYKVKKGKQEQYLKDEDALLQYQTAMALDGATLHVNESAPPIGGEALERLVNQHRAVSHL 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFN--CESDQEINVSLASKLANRLNF----IAEKSEKSWH 654
           I           + Q +     N    + +   ++    +   LN     I  + +    
Sbjct: 595 ITRMSRRAPDAVLTQLIYQPELNETLLASESDLLAWCQGMEAVLNESNHGIQYQIQVRRD 654

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
              +           GV  ++ +    + S   +        I         +       
Sbjct: 655 EERSLFVPHAVVRQHGVDREYAISYDFLQSSEYRQLVSLGKEIANLIEDGGFIKRGEKVK 714

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            I      +D +   G++GI +QRYKGLGEMN  QLWETT++P+ R +LRV I DA  AD
Sbjct: 715 PIANFVEAVDWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRMLRVTIDDAVGAD 774

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LFS LMGD VEPRR+FI+ N+L    LD+
Sbjct: 775 QLFSTLMGDAVEPRRDFIETNALRVANLDV 804


>gi|320185536|gb|EFW60302.1| DNA gyrase subunit B [Shigella flexneri CDC 796-83]
          Length = 804

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVYEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADLLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|59710619|ref|YP_203395.1| DNA gyrase subunit B [Vibrio fischeri ES114]
 gi|59478720|gb|AAW84507.1| DNA gyrase, subunit B [Vibrio fischeri ES114]
          Length = 805

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/812 (50%), Positives = 551/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +VSD+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIIVTIHEDNSVSVSDDGRGIPTAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  ++L I R G I++  + +G  + PL V G   + TGT++ F PS +
Sbjct: 116 HGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   F Y+ L  RLRELSFLNS V I L D R  E +     Y+GGI+AFV +L+R+K
Sbjct: 175 TFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFMYEGGIQAFVQHLNRNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 234 TPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 354 MGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 414 KDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++ +Y I  +L             I+   L + +     + K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMAEYQIALALDNASLFTNADAPAIAGQALEDLVVQYNSVMK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS----- 652
           LI      +  + + + V +G    E   D+    +        LN     + +      
Sbjct: 594 LIDRMSRRYPVSVLNRLVYTGRLTQEMCADEASAQAWTEAFVAELNATEVGASQYNAALL 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           +    N     +     GV+ ++VL    + S         +  ++              
Sbjct: 654 FDEEANAYQPKLVVRTHGVEHEYVLSIDLLNSKEYARIADLAEALDGLLEESAYAQRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  ++     L  +    R+G S+QRYKGLGEMN  QLWETT++P++R +++V I DA  
Sbjct: 714 KQPVSSFEDALAWLTKESRRGFSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAVA 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD+LF+ LMGD+VEPRR FI+EN+L    LDI
Sbjct: 774 ADELFTTLMGDQVEPRRNFIEENALRVSNLDI 805


>gi|237729021|ref|ZP_04559502.1| DNA gyrase subunit B [Citrobacter sp. 30_2]
 gi|226909643|gb|EEH95561.1| DNA gyrase subunit B [Citrobacter sp. 30_2]
          Length = 804

 Score =  953 bits (2464), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/806 (50%), Positives = 552/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG +++ ++++G+   PL VTG     TGT+V F PS + F+   
Sbjct: 122 VVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGETE-LTGTQVRFWPSHETFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   +S   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALSGESLEKLVSEYNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           D+    +  S+L N LN          S       +N
Sbjct: 599 RRFPKALLKELVYQPTLPEADLADEAKVTAWVSQLVNVLNENEMHGSTWNSFVRKDAELN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + LE   +             ++         +     +  +  
Sbjct: 659 LFEPVIRVRTHGVDTDYPLEHEFVTGGEYHRICTLGEKLRGLIEDDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLQKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|330447266|ref|ZP_08310916.1| DNA gyrase, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491457|dbj|GAA05413.1| DNA gyrase, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 805

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/806 (50%), Positives = 550/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ DGS +VSD+GRGIPT+LH+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDGSVSVSDDGRGIPTELHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  ++L IKR G+I++  + +G+ D PL V G   ++TGT + F PS + F+  +
Sbjct: 122 VVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGTRIRFWPSEETFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+ L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV +L+R+K P+   
Sbjct: 181 FQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFMYEGGIQAFVEHLNRNKTPIHPK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R ALTR + S+++
Sbjct: 240 VFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRGALTRTLNSFMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L+
Sbjct: 300 KEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 EFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAVS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E +  Y    +L        D    I+   L   +       KLI    
Sbjct: 540 KGKQEQYIKDDEDMNQYQTTLALDNASLFANDGAPAITGAALETLVTQYNAGIKLIDRMS 599

Query: 606 PNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             +    + + V       E    +    +  + L   LN          SE       N
Sbjct: 600 RRYPSLMLNEFVYQPRLTTEMMADEAKVEAWLAPLITALNAKQSGESLYSSEIIRDEENN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                V     GV  +++L    + S         S  ++        +     K  ++ 
Sbjct: 660 VFLPKVIVRTHGVDHEYLLSFDLLNSKEYAKIADLSEALDGLLEDTAFVQRGERKQAVSS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT++P++R +++V I DA  AD+LF+
Sbjct: 720 FKDALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAVAADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+EN+L    LD+
Sbjct: 780 CLMGDQVEPRRNFIEENALKVANLDV 805


>gi|197250721|ref|YP_002148773.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197214424|gb|ACH51821.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 804

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L             +S   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           D++      + L   LN   +     K +   +   N
Sbjct: 599 RRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   +     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVNS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|16762490|ref|NP_458107.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16767120|ref|NP_462735.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29143978|ref|NP_807320.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|161616952|ref|YP_001590917.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167548876|ref|ZP_02342635.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167992428|ref|ZP_02573526.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233389|ref|ZP_02658447.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168235474|ref|ZP_02660532.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168242054|ref|ZP_02666986.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168260381|ref|ZP_02682354.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168464835|ref|ZP_02698727.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818305|ref|ZP_02830305.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194442844|ref|YP_002043085.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194449732|ref|YP_002047868.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194472695|ref|ZP_03078679.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194737072|ref|YP_002116779.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262274|ref|ZP_03162348.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198244047|ref|YP_002217785.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200387101|ref|ZP_03213713.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204928757|ref|ZP_03219956.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205354578|ref|YP_002228379.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859061|ref|YP_002245712.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213424954|ref|ZP_03357704.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|224585634|ref|YP_002639433.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238913088|ref|ZP_04656925.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289826402|ref|ZP_06545514.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|61225454|sp|P0A2I3|GYRB_SALTY RecName: Full=DNA gyrase subunit B
 gi|61225456|sp|P0A2I4|GYRB_SALTI RecName: Full=DNA gyrase subunit B
 gi|25292820|pir||AD0958 DNA gyrase chain B [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16422408|gb|AAL22694.1| DNA gyrase, subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16504795|emb|CAD03160.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139614|gb|AAO71180.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|149693011|emb|CAK55540.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|149693013|emb|CAK55541.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|161366316|gb|ABX70084.1| hypothetical protein SPAB_04773 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401507|gb|ACF61729.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408036|gb|ACF68255.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194459059|gb|EDX47898.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194712574|gb|ACF91795.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195632426|gb|EDX50910.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197240529|gb|EDY23149.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291517|gb|EDY30869.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197938563|gb|ACH75896.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199604199|gb|EDZ02744.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204322190|gb|EDZ07388.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205274359|emb|CAR39384.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205325567|gb|EDZ13406.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205329403|gb|EDZ16167.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332584|gb|EDZ19348.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338996|gb|EDZ25760.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344661|gb|EDZ31425.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205350152|gb|EDZ36783.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206710864|emb|CAR35228.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224470162|gb|ACN47992.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248976|emb|CBG26833.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996120|gb|ACY91005.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160368|emb|CBW19893.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914965|dbj|BAJ38939.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320088256|emb|CBY98018.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321225553|gb|EFX50608.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322617252|gb|EFY14157.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619060|gb|EFY15946.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625127|gb|EFY21955.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630178|gb|EFY26949.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634396|gb|EFY31130.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635281|gb|EFY31996.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642908|gb|EFY39491.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647625|gb|EFY44112.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650569|gb|EFY46976.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656405|gb|EFY52697.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322661585|gb|EFY57808.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661666|gb|EFY57885.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668220|gb|EFY64378.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672851|gb|EFY68959.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322674968|gb|EFY71054.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683658|gb|EFY79671.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687734|gb|EFY83703.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132196|gb|ADX19626.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323192051|gb|EFZ77286.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200533|gb|EFZ85611.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204959|gb|EFZ89944.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206702|gb|EFZ91659.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211774|gb|EFZ96607.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218636|gb|EGA03343.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220037|gb|EGA04507.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323224807|gb|EGA09072.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232484|gb|EGA16586.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235259|gb|EGA19344.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241047|gb|EGA25084.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241403|gb|EGA25435.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248634|gb|EGA32564.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252067|gb|EGA35927.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258629|gb|EGA42292.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262340|gb|EGA45898.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268176|gb|EGA51652.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270590|gb|EGA54035.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625571|gb|EGE31916.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326629714|gb|EGE36057.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332990685|gb|AEF09668.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 804

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L             +S   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           D++      + L   LN   +     K +   +   N
Sbjct: 599 RRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   +     +       ++         +     +  +T 
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|209551517|ref|YP_002283434.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537273|gb|ACI57208.1| DNA gyrase, B subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 811

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 517/806 (64%), Positives = 656/806 (81%), Gaps = 5/806 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++N  ++ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 7   TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           DI+TVTLN DGS TV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 67  DIVTVTLNPDGSVTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WLKL+I+R+G I+EMSF +G+ D PL VTG A N+TGTEV+F+PS+D 
Sbjct: 127 GVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKVTGEAPNETGTEVSFMPSTDT 186

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV+YLDR KK
Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELRYDGGLEAFVAYLDRAKK 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ 
Sbjct: 247 SLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY + S  +K++K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN
Sbjct: 307 SYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ W EEHP EAKI+V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADCSERD
Sbjct: 367 EALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL
Sbjct: 427 PTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D F++ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +PPL
Sbjct: 487 GTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPL 546

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y ++RGKS+QY+KDE++LE+YLI+Q L +       S  V +  DLR  I DAL++  L+
Sbjct: 547 YKVSRGKSVQYLKDEKALEEYLISQGLEDAALKLG-SGEVRTGQDLREVILDALRMRALL 605

Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
            + +  +++  IEQA I+G  N E   D+    +L S++A+RL+ IAE++E+ W G + +
Sbjct: 606 DNLHSRYNRAAIEQAAIAGALNAERVSDRARAQALTSEVASRLDIIAEETERGWQGDLTS 665

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  + ++R+ RGV+E  VL+ + I S  +++    ++R++E Y T  SL      ++I+G
Sbjct: 666 DGGLRLERMVRGVKEIVVLDMALIGSSDARHIDQLTSRLKEIYQTPPSLHRREGDLEISG 725

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD LF+
Sbjct: 726 PRALLDAIFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVPDATDADGLFA 785

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           RLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 786 RLMGDEVEPRREFIQDNALSVANLDI 811


>gi|254472258|ref|ZP_05085658.1| DNA gyrase, B subunit [Pseudovibrio sp. JE062]
 gi|211958541|gb|EEA93741.1| DNA gyrase, B subunit [Pseudovibrio sp. JE062]
          Length = 817

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/799 (59%), Positives = 601/799 (75%), Gaps = 5/799 (0%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DN+IDE+L G+AD +TVTL
Sbjct: 20  EYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNSIDEALAGHADYVTVTL 79

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS TV+DNGRGIP D+H EEGISAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVV
Sbjct: 80  NADGSVTVTDNGRGIPVDIHPEEGISAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVV 139

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L LRI R    + + F +G    PL V G A   +GTEVTF PS + F+  +F+
Sbjct: 140 NALSTTLDLRIYRNDKEHFIRFHHGESAGPLEVVGDAPGKSGTEVTFTPSPETFTKTEFD 199

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YDTL+HRLREL+FLNS  +I L D R  EP    ++Y+GG+EAFV YLDR K PL++ P+
Sbjct: 200 YDTLEHRLRELAFLNSGARIILTDNRGVEPHVEELYYEGGLEAFVRYLDRAKHPLIEEPV 259

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            +   +D I++++AM WN  YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQ+T Y + S 
Sbjct: 260 TMMAEKDGITVEVAMWWNSSYHENVLCFTNNIPQRDGGTHLAGFRAALTRQLTGYADTSG 319

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K++K S  G+DCREG + VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ V + LS WL
Sbjct: 320 LLKREKVSPTGEDCREGLSCVLSVKVPDPKFSSQTKDKLVSSEVRPVVENLVGEALSTWL 379

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK IV KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERD  K+ELF
Sbjct: 380 EENPAPAKSIVSKVVEAASAREAARKARELTRRKGALDIASLPGKLADCQERDASKAELF 439

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQGR R NQA+LPL+GKILNVERARFDKM+SSQEIGTLITALGTGIG +
Sbjct: 440 IVEGDSAGGSAKQGRDRSNQAVLPLKGKILNVERARFDKMISSQEIGTLITALGTGIGNE 499

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F++ KLRYHKIIIMTDADVDGAHIRTLLLTF FRQMP LI NG++YI +PPLY +TRGK
Sbjct: 500 EFNLEKLRYHKIIIMTDADVDGAHIRTLLLTFLFRQMPDLIENGYVYIAQPPLYKVTRGK 559

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
           S QY+KDE + E+YLI   L E       +  V    DLR+ +++A ++  ++   +  +
Sbjct: 560 SEQYLKDEAAFEEYLIGSGLDETSLALA-NGEVRLGEDLRSVVEEAREVSDILNGLHSRY 618

Query: 609 DKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGS-INNSDILVK 665
           DK  +EQA I+G  N +   + E     A+ +A RL+ +A++ E+ W G      D++  
Sbjct: 619 DKAVVEQAAIAGALNSDNLHNHEKAQEAAAYIARRLDILADEFERGWEGEATEEGDLIFS 678

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           R+ RGV+E   ++ + + S  ++        ++E Y    SL+     ++I GP +LL+ 
Sbjct: 679 RVVRGVKEVTTIDAALLGSADARRLDSHFKHLDEVYHKAASLVRKDKSVEIRGPQALLEA 738

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           +++ GRKGISMQRYKGLGEMN  QLWETTL+P+ RSLL+VKI +A  ADD+F++LMGDEV
Sbjct: 739 VYAQGRKGISMQRYKGLGEMNPEQLWETTLDPNVRSLLQVKIKEADAADDIFTKLMGDEV 798

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRR+FIQ N+L    LD+
Sbjct: 799 EPRRDFIQTNALSVANLDV 817


>gi|163733266|ref|ZP_02140710.1| DNA gyrase subunit B [Roseobacter litoralis Och 149]
 gi|161393801|gb|EDQ18126.1| DNA gyrase subunit B [Roseobacter litoralis Och 149]
          Length = 804

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/805 (56%), Positives = 590/805 (73%), Gaps = 5/805 (0%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+N Q    Y A+SI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSENEQAPEEYGANSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TV ++ D S +VSDNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADAVTVKIHADSSISVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI REG  +   F  G   + L V G   + TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTVDHLKVVGDT-DRTGTEVRFMAST 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  +++++TL+ RLREL+FLNS V+I LID+R  E     +FY+GG++ FV YLDR 
Sbjct: 180 DTFSNLEYSFETLEKRLRELAFLNSGVRIILIDERPAEELRSELFYEGGVKEFVKYLDRS 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +M  PI I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 240 KSSVMPEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 299

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  ++K+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 300 INNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 359

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EE+P EAKI+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE
Sbjct: 360 VNEKLAEWFEENPSEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 420 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G LYI +P
Sbjct: 480 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIEQGHLYIAQP 539

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KDE ++E+YL+ Q +   +    +++  IS  DL   ++ A ++ +
Sbjct: 540 PLYKVSRGKSEVYLKDEAAMEEYLVQQGIDGAMLRQGNNEE-ISGADLARVVELARQMRR 598

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA I+G F   +       +A K+A RLN IA + E+ W G I  
Sbjct: 599 VLDAFPTHYPRHILEQAAIAGAFTPGAVDADLQGVADKVAARLNLIALEYERGWQGRITQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  +    +     F+  ++E Y    +L+       I G
Sbjct: 659 DHGIRLARILRGVEEVRTLDGRILRGGEASRSGSFTEHLQEVYNLPATLVRKDRTQLIHG 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL+ I   G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+VK+ D ++ADDLF+
Sbjct: 719 PMDLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVDDMAEADDLFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 779 KLMGDVVEPRREFIQQNALSVENLD 803


>gi|238917987|ref|YP_002931501.1| DNA gyrase subunit B [Edwardsiella ictaluri 93-146]
 gi|238867555|gb|ACR67266.1| DNA gyrase, B subunit, putative [Edwardsiella ictaluri 93-146]
          Length = 804

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/805 (50%), Positives = 548/805 (68%), Gaps = 12/805 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G+++E  + +G+   PL V G   + TGT V F PS + FS   
Sbjct: 122 VVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDT-DLTGTRVRFWPSMETFSNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLCDKRND--REDHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E
Sbjct: 239 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYME 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
               +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 299 NEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y ++ +L         +   ++   L   + +  +  KLI    
Sbjct: 539 KGKQEQYIKDDEAMDQYQMSIALDGAALHINAAAPALAGEPLEKLVAEYYQAQKLIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS-----WHGSIN 658
             + K  + Q +     +     +Q       + L   LN               +    
Sbjct: 599 RRYPKAVLNQLIYQPTLSDADLGNQAQVEQWINSLVATLNEKELHGSVYSARALENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + LV+    GV   +  +   +     +       ++ +       +     +  +  
Sbjct: 659 MFEPLVRVRTHGVDTDYGFDFDFVHGAEYRRICALGEKLRDLLEESAFVERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P+ R +LRV I DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPEGRRMLRVTIKDAVAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
            LMGD VEPRR FI+EN+L +  LD
Sbjct: 779 TLMGDAVEPRRAFIEENALKASNLD 803


>gi|157144341|ref|YP_001451660.1| DNA gyrase subunit B [Citrobacter koseri ATCC BAA-895]
 gi|157081546|gb|ABV11224.1| hypothetical protein CKO_00045 [Citrobacter koseri ATCC BAA-895]
          Length = 804

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/806 (50%), Positives = 547/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+  I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDNKIHRQIYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLKDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + D     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSDYNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           +++      + L   LN   +     K +   +    
Sbjct: 599 RRFPKALLKELVYQPTLTEADLSNEQAVTRWVNALITELNEKEQHGSQWKFDVRENAEQQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   +     +       ++         +     +  +  
Sbjct: 659 QFEPIVRVRTHGVDTDYPLDHEFVTGGEYRRICTLGEKLRGLIEDDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|254439392|ref|ZP_05052886.1| DNA gyrase, B subunit [Octadecabacter antarcticus 307]
 gi|198254838|gb|EDY79152.1| DNA gyrase, B subunit [Octadecabacter antarcticus 307]
          Length = 805

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/805 (56%), Positives = 582/805 (72%), Gaps = 4/805 (0%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+D  Q    Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MTDEQQKPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ DGS +VSDNGRGIP  +H+ EG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADAVNVKIHDDGSVSVSDNGRGIPVGIHEGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS +L+LRI R G  +   F  G     L V    G+ TGTEV FL S 
Sbjct: 121 LHGVGVSVVNALSDYLELRIWRNGKEHYARFEGGFTVKHLEVVADCGDRTGTEVRFLASL 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS ++F ++TL+ RLREL+FLNS V+I L D+R  E     ++Y GG++ FV YLDR 
Sbjct: 181 DTFSNREFYFETLEKRLRELAFLNSGVRIILTDERPAEHLVSELYYDGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  ++  PI + G RD I +++AM WND Y+E VL FTNNIPQ+DGGTH++G R+ALTR 
Sbjct: 241 KTSILPEPIYVIGERDEIVVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +K++K S  GDD REG T VLSIK+PDP+FSSQTK+KLVSSEVR  VE+ 
Sbjct: 301 INNYAQSSGIAKREKISFTGDDAREGLTCVLSIKVPDPKFSSQTKDKLVSSEVRPAVENI 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ LS W EE+P  AKI+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE
Sbjct: 361 MNEKLSEWFEENPQIAKIVVSKIVEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +P
Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KD+ ++ DYL  Q +   +     +   I   DLR  +D+A ++ +
Sbjct: 541 PLYKVSRGKSEVYLKDQAAMNDYLTEQGVEGAML-RQGNGEEIGGADLRRVVDEAGRLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA I+G F   +       +A K+A RL+ IA + E+ W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAIAGAFVAGAVDADLQGVADKVAKRLDLIAHEWERGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +S I + RI RGV+E   L+G  + S  ++    F+  +++ Y T  +LI       I G
Sbjct: 660 DSGIRLARILRGVEEVRTLDGPMMRSGEARKSGTFTQHLQDVYNTPATLIRKDRVQNIYG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  +   G +G+S+QRYKGLGEMN SQLWETTL+PD R+LL+VK+ D ++ADDLF+
Sbjct: 720 PLDLLKAVLEEGERGLSLQRYKGLGEMNPSQLWETTLDPDARTLLQVKVEDVAEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQQNALNVENLD 804


>gi|110677620|ref|YP_680627.1| DNA gyrase subunit B [Roseobacter denitrificans OCh 114]
 gi|109453736|gb|ABG29941.1| DNA gyrase, B subunit [Roseobacter denitrificans OCh 114]
          Length = 804

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/805 (56%), Positives = 589/805 (73%), Gaps = 5/805 (0%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+N Q    Y A+SI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSENDQTPEEYGANSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TV ++ D S +VSDNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADAVTVKIHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI REG  +   F  G     L V G   + TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTTRHLEVVGDT-DRTGTEVRFMAST 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + FS  D++++TL+ RLREL+FLNS V+I LID+R  E     +FY+GG++ FV YLDR 
Sbjct: 180 ETFSNLDYSFETLEKRLRELAFLNSGVRIILIDERPAEELRSDLFYEGGVKEFVKYLDRS 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +M  PI I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 240 KSSVMPEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 299

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  ++K+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 300 INNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 359

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EE+P EAKI+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE
Sbjct: 360 VNEKLAEWFEENPAEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 420 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G LYI +P
Sbjct: 480 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIEQGHLYIAQP 539

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  Y+KDE ++E+YLI Q +   +    +++  IS  DL   ++ A ++ +
Sbjct: 540 PLYKVSRGKSEVYLKDEAAMEEYLIQQGIDGAMLRQGNNEE-ISGADLARVVELARQMRR 598

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA I+G F   +       +A K+A RLN IA + E+ W G I  
Sbjct: 599 VLDAFPTHYPRHILEQAAIAGAFTPGAVDADLQGVADKVAARLNLIALEYERGWQGRITQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  +    +     F+  ++E Y    +L+       I G
Sbjct: 659 DHGIRLARILRGVEEVRTLDGRILRGGEASRSGSFTEHLQEVYNLPATLVRKDRTQLIHG 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL+ I   G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+VK+ D ++ADDLF+
Sbjct: 719 PMDLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVDDMAEADDLFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 779 KLMGDVVEPRREFIQQNALSVENLD 803


>gi|56415708|ref|YP_152783.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197364636|ref|YP_002144273.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56129965|gb|AAV79471.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096113|emb|CAR61709.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 804

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I I++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGIEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L             +S   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           D++      + L   LN   +     K +   +   N
Sbjct: 599 RRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   +     +       ++         +     +  +T 
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|261341641|ref|ZP_05969499.1| hypothetical protein ENTCAN_08109 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315998|gb|EFC54936.1| DNA gyrase, B subunit [Enterobacter cancerogenus ATCC 35316]
          Length = 803

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 549/806 (68%), Gaps = 13/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQVYTHGVPQAPLAVTGDT-DKTGTLVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRDGKE--DHFHYEGGIRAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANSSAPALAGEPLERLVSEFNAAQKMIVRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI-----N 658
             + KT ++  V           D++      + L + LN   E+    W   +      
Sbjct: 599 RRYPKTLLKALVYQPTLTEADLSDEQTVSRWVNSLVSELNE-NEQHGSMWKCDVQQNADQ 657

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + LE   +     +       ++         +     +  +  
Sbjct: 658 QFEPVIRVRTHGVDTDYPLEHEFVTGPEYRRLCTLGEKLRGLIEDDAFIERGERRQPVAS 717

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 718 FEQALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 777

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 778 TLMGDAVEPRRAFIEENALKAANIDI 803


>gi|149912808|ref|ZP_01901342.1| DNA gyrase, B subunit [Roseobacter sp. AzwK-3b]
 gi|149813214|gb|EDM73040.1| DNA gyrase, B subunit [Roseobacter sp. AzwK-3b]
          Length = 805

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/805 (55%), Positives = 578/805 (71%), Gaps = 4/805 (0%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++ + +   Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MAEAVPSPDEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + VT++ D S +VSDNGRGIP ++H+EEG+SAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HADAVNVTIHADSSISVSDNGRGIPVEIHEEEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LR+ R G  +   F  G     L V G A    GTEV FL S+
Sbjct: 121 LHGVGVSVVNALSEWLELRVWRNGKEHYARFEGGDTVEHLRVVGDANGRKGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + FS  ++++DTL+ RLREL+FLNS V+I L D+R  EP    + Y GG++ FV YLDRH
Sbjct: 181 ETFSNLEYSFDTLEKRLRELAFLNSGVRIILRDERPAEPLVTELHYDGGVQEFVKYLDRH 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  ++  PI I G +D + +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KTSMIAEPISINGEKDGVGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y ++S  +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 301 IQKYAQESGIAKREKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ W EE+P EAK IV K+++A+M R+AAR+ARDLTRRK  +D+  L GKL DCSE
Sbjct: 361 VYEKLTEWFEENPNEAKQIVGKIIEAAMAREAARKARDLTRRKTAMDVNYLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+ELFLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTELFLVEGDSAGGSAQTGRDRSTQAVLPLRGKILNVERARFDRMLGSQEIGNLVV 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI NG+LYI +P
Sbjct: 481 ALGTGIGRDEFNISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIENGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGKS  Y+KDE +LEDYLI Q   + +     S   I   DL   +++A +  +
Sbjct: 541 PLYKVMRGKSEVYLKDEPALEDYLIQQGTDDAML-RLGSGEEIVGQDLVRIVEEARQTKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           +++ F  ++ +  +EQA I+  F           +A  +A RL+ IA + E+ W G +  
Sbjct: 600 ILEAFPTHYPRHILEQASITEAFMPGRADADLQGVADAIAKRLDLIALEYERGWQGRVTQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           ++ I + R  RGV+E   L G  +    ++     +  + E Y     L+    +  I G
Sbjct: 660 DNGIRLTRSLRGVEEIRTLNGPILRGGEARRLGQLTASLREIYEFPAKLVRKDREQAIYG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LLD I   G KG+++QRYKGLGEMN  QLWETTL+PD R+LL+VKI D ++ADDLF+
Sbjct: 720 PLDLLDAILKEGEKGLTLQRYKGLGEMNPGQLWETTLDPDARTLLQVKIDDVAEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQQNALNVENLD 804


>gi|269137362|ref|YP_003294062.1| DNA gyrase subunit B [Edwardsiella tarda EIB202]
 gi|267983022|gb|ACY82851.1| DNA gyrase subunit B [Edwardsiella tarda EIB202]
 gi|304557463|gb|ADM40127.1| DNA gyrase subunit B [Edwardsiella tarda FL6-60]
          Length = 804

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/805 (50%), Positives = 549/805 (68%), Gaps = 12/805 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G+++E  + +G+   PL V G     TGT V F PS + FS   
Sbjct: 122 VVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDTE-QTGTRVRFWPSMETFSNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLRDKRND--REDHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E
Sbjct: 239 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYME 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
               +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 299 NEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y ++ +L         +   ++   L   + +  ++ KLI    
Sbjct: 539 KGKQEQYIKDDEAMDQYQMSIALDGAALHINAAAPALAGEPLEKLVAEHYQVQKLIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS-----WHGSIN 658
             + K  + Q +     +     +Q       + L   LN   +           +    
Sbjct: 599 RRYPKAVLNQLIYQPTLSEADLGNQAQVEQWINSLVATLNEKEQHGSVYSARVLENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + LV+    GV   +  +   +     +       ++ +       +     +  +  
Sbjct: 659 MFEPLVRVRTHGVDTDYAFDFDFVHGAEYRRICALGEKLRDLLEESAFVERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P+ R +LRV I DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVTIKDAVAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
            LMGD VEPRR FI+EN+L +  LD
Sbjct: 779 TLMGDAVEPRRAFIEENALKASNLD 803


>gi|271498582|ref|YP_003331607.1| DNA gyrase subunit B [Dickeya dadantii Ech586]
 gi|270342137|gb|ACZ74902.1| DNA gyrase, B subunit [Dickeya dadantii Ech586]
          Length = 803

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/805 (50%), Positives = 545/805 (67%), Gaps = 11/805 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG ++   + +G    PL V G A + TGT V F PS + F+   
Sbjct: 122 VVNALSEKLELVIRREGKLHRQEYKHGEPQAPLGVIGDA-DATGTTVRFWPSLETFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L D+R    +     Y+GGI+AFV YL+R+K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDEREA-NKADHFHYEGGIKAFVEYLNRNKTPIHP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 240 QVFYFSAEKDDIGVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +ND L 
Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNDRLV 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 360 DYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G ++I +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L             ++   L   +     + KLI    
Sbjct: 540 KGKQEQYIKDDEAMDQYQIALALDGATLHTNAHAPALAGEPLEKLVAGHYGVQKLIDRME 599

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NN 659
             + +  +   +               +  S +   + +++EK +     S         
Sbjct: 600 RRYPRALLNALIYQPSLTEAMLNSQAEA-QSWMEALIQYLSEKEQHGSTYSFILRHVNER 658

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            + +++    GV   + L+         +       ++         +     K  +   
Sbjct: 659 HEPVLRIRTHGVDTDYALDLMFAQGNEYRKINQLGEKLRGLIEDGAFVERGERKQPVASF 718

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
              LD +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD+LF+ 
Sbjct: 719 EQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADELFTT 778

Query: 780 LMGDEVEPRREFIQENSLP-SALDI 803
           LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 LMGDAVEPRRAFIEENALKAANIDI 803


>gi|62182323|ref|YP_218740.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62129956|gb|AAX67659.1| DNA gyrase, subunit B (type II topoisomerase) [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716814|gb|EFZ08385.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 804

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVMDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L             +S   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           D++      + L   LN   +     K +   +   N
Sbjct: 599 RRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   +     +       ++         +     +  +T 
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|114319170|ref|YP_740853.1| DNA gyrase subunit B [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225564|gb|ABI55363.1| DNA gyrase subunit B [Alkalilimnicola ehrlichii MLHE-1]
          Length = 805

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/811 (50%), Positives = 545/811 (67%), Gaps = 14/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     SYD+DSI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DN++DE+L GY
Sbjct: 1   MTEQT---SYDSDSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSVDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV+DNGRGIP D+H EEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CSEIQVTIHGDNSVTVADNGRGIPVDIHTEEGCSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R G ++   +  G+   PL V G    +TGT +TFLPS +
Sbjct: 118 HGVGVSVVNALSERLRLVIQRNGKVHTQEYRMGVPVEPLKVVGET-QETGTRLTFLPSRE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+   +NYD L  R RELSFLN  V+I+L D+R+ +       Y GGI+AFV +L+R+K
Sbjct: 177 VFTQTQYNYDILAKRFRELSFLNPGVRIALKDERTEKE--DVFEYAGGIKAFVEHLNRNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL  +   + G R+++ +D+AM+WND Y EN+ CFTNNIPQ+DGGTHLSG R+ALTR +
Sbjct: 235 DPLHPTVFYLAGMRESVGVDVAMQWNDSYQENIFCFTNNIPQRDGGTHLSGFRAALTRTL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+E    +KK K +  GDD REG T+V+S+K PDP+FSSQTK+KLVSSE++ +VE  +
Sbjct: 295 NQYLEAQGYAKKLKVTPTGDDIREGLTAVVSVKAPDPKFSSQTKDKLVSSEIKGIVEGVL 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +  + +L E+P EAK I +K++DAS  R+AAR+AR++TRRKGVLD+A LPGKLADC E+
Sbjct: 355 AEAFNDFLYENPAEAKAIAEKIIDASRAREAARKAREMTRRKGVLDVAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKML+S E+GTLITA
Sbjct: 415 DPAQSEIYLVEGDSAGGSAKQGRDRRYQAILPLKGKILNVEKARFDKMLASVEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D FD +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQM  L+  G +YI +PP
Sbjct: 475 LGCGIGKDEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMRELVERGHVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK   YVKDE  L +YL+  +L++      +    IS   L       L+   L
Sbjct: 535 LYKVKRGKQEHYVKDEAELTEYLLQIALADASLHSQEGAPPISGEALGRLARRYLEAMDL 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKS-----EKSW 653
           +       D T + +       + +   +          L  R N   +KS     +   
Sbjct: 595 VDHMRRRWDPTLLSEMTALAPVSEQDFADGAAMTRWFETLVERANAQQDKSVTYTLDLQL 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                  +  V +   G+   +    +   S   +  +  + ++   +     +     +
Sbjct: 655 GTEGGFKEARVIKRMHGILYPYTFNSAFFLSAEYETLKRLAEQLHGLFGDGGFIQRGERR 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +     ++D +    R+G S+QRYKGLGEMN  QLWETT+NPDTR LLRV I DA  +
Sbjct: 715 KPVATLQEVVDWLMDEARRGQSIQRYKGLGEMNPDQLWETTMNPDTRRLLRVTIEDAVAS 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D++F+ LMGD+VEPRR+FI++N+L    LDI
Sbjct: 775 DEIFTTLMGDQVEPRRDFIEQNALTVANLDI 805


>gi|238897209|ref|YP_002921957.1| DNA gyrase subunit B [Klebsiella pneumoniae NTUH-K2044]
 gi|238549539|dbj|BAH65890.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 805

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/808 (50%), Positives = 552/808 (68%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I
Sbjct: 1   MMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  VVTIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R+  +++  + +G+   PL VTG   + TGT V F PS + F+ 
Sbjct: 121 VSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTN 179

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+
Sbjct: 180 VTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPI 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y
Sbjct: 238 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ 
Sbjct: 298 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP 
Sbjct: 358 LSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY 
Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KD+E+++ Y I+ +L         +   ++   L   + +     K+I  
Sbjct: 538 VKKGKQEQYIKDDEAMDQYQISIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656
                 K  +++ +           D++      + L + LN   +     K +   +  
Sbjct: 598 MERRFPKALLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDLHENKE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
           + + + +++    GV   + L+   I     +       ++         +     +  +
Sbjct: 658 LQHFEPVIRVRTHGVDTDYPLDNEFIMGPEYRRICALGEKLRGLMEEDAYIERGERRQPV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV + DA  AD L
Sbjct: 718 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803
           F+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 778 FTTLMGDAVEPRRAFIEENALKAANIDI 805


>gi|293393724|ref|ZP_06638032.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Serratia odorifera
           DSM 4582]
 gi|291423768|gb|EFE96989.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Serratia odorifera
           DSM 4582]
          Length = 804

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/806 (49%), Positives = 544/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++ +G    PL V G     TGT V F PS   F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYSHGEPQTPLKVVGETE-QTGTTVRFWPSYQTFTNQT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLKDKRDDKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 TVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L 
Sbjct: 299 KEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 DYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAMS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+++++ Y I  +L             ++   L   + +   + KLI    
Sbjct: 539 KGKQEQYIKDDDAMDQYQIAIALDGATLHANAHAPALAGEPLEKLVAEHYSVQKLIGRME 598

Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             + +  +   +       +   DQ    +    L N LN   +           +    
Sbjct: 599 RRYPRALLNNLIYQPTLAEDDLGDQAKVQAWIESLVNLLNEKEQHGSSYGYVMIENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  ++    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 MFEPTLRIRTHGVDTDYPLDFDFIHGGEYRKICQLGEKLRGLIEDDAFIERGERRQPVDS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDSVEPRRAFIEENALKAANIDI 804


>gi|146276064|ref|YP_001166223.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|145554305|gb|ABP68918.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17025]
          Length = 811

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/812 (55%), Positives = 584/812 (71%), Gaps = 12/812 (1%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++  +    Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MAEAARVPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +A  +TV ++ D S +V DNGRGIP D+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HATAVTVKIHADSSVSVRDNGRGIPVDMHASEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF---- 175
           LHGVGVSVVNALS WL+LRI R G  +   F NG     L V   A  + GTEV F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHYARFENGETVEHLRVVRDAPGEKGTEVRFLAAA 180

Query: 176 ---LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
               P    FS  D+++ TL++RLREL+FLNS V+I L D+R  EP    +FY+GG+  F
Sbjct: 181 KTNRPDGT-FSNLDYSFKTLENRLRELAFLNSGVRILLEDERPAEPLHSELFYEGGVREF 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR K P+M  PI I G R  I +++AM WND YHE VL FTNNIPQ+DGGTHL+G 
Sbjct: 240 VRYLDRSKSPVMPEPIFITGERGGIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHLAGF 299

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR IT Y + S  ++++K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 300 RGALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 359

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R  VE+ VN+ L+ W EE+P  AK IV K+++A++ R+AAR+AR++TRRK  +D+ASLPG
Sbjct: 360 RPAVENLVNEKLAEWFEENPAAAKGIVGKIVEAALAREAARKAREMTRRKTAMDVASLPG 419

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS+
Sbjct: 420 KLADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGKILNVERARFDRMLSSE 479

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            +GTLITALG GIG+D FDI KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP++I  G
Sbjct: 480 TVGTLITALGAGIGRDEFDIGKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIEGG 539

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           FLYI +PPLY + RGKS  Y+KD+ +L+DYLI Q +   I      +  I+  DL   I+
Sbjct: 540 FLYIAQPPLYKVARGKSEVYLKDQAALDDYLIQQGIEGAILRLATGEE-IAGQDLLRVIE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
            A +  ++++ F  ++ +  +EQA +SG F+     +    +A ++A RL+  A + E+ 
Sbjct: 599 GARQFRRVLEGFPTHYPRNILEQAALSGAFDPGRADDDLQLVADRVAERLDLTAAEYERG 658

Query: 653 WHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           W G I  +  I + R+ RGV+E   L+G+ + S  ++     S +  + Y     L+   
Sbjct: 659 WKGRITQDHGIRLSRVLRGVEELRTLDGAVLRSGEARRLSQVSGQTRDVYAPGARLVRKD 718

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            +  I GP +LL  + + G KG+S+QRYKGLGEMN  QLWETTL+P+ R+LL+VK+ D +
Sbjct: 719 REQPIHGPIALLKAVLAEGEKGLSLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVEDLA 778

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           +ADD+F++LMGD VEPRREFIQ+N+L    LD
Sbjct: 779 EADDIFTKLMGDVVEPRREFIQQNALNVENLD 810


>gi|197334084|ref|YP_002154784.1| DNA gyrase, B subunit [Vibrio fischeri MJ11]
 gi|197315574|gb|ACH65021.1| DNA gyrase, B subunit [Vibrio fischeri MJ11]
          Length = 805

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/812 (50%), Positives = 552/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +VSD+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIIVTIHEDNSVSVSDDGRGIPTSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  ++L I R G I++  + +G  + PL V G   + TGT++ F PS +
Sbjct: 116 HGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   F Y+ L  RLRELSFLNS V I L D R  E +     Y+GGI+AFV +L+R+K
Sbjct: 175 TFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFMYEGGIQAFVQHLNRNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 234 TPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 354 MGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 414 KDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++ +Y I  +L             I+   L + +     + K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMAEYQIALALDNASLFTNADAPAIAGQALEDLVVQYNSVMK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS----- 652
           LI      +  + + + V +G    E   D+    +        LN     + +      
Sbjct: 594 LIDRMSRRYPVSVLNRLVYTGRLTQEMCADEASAQAWTEAFVAELNANEVGASQYNAALL 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           +    N     +     GV+ ++VL    + S         +  ++              
Sbjct: 654 FDEEANAYQPKLVVRTHGVEHEYVLSIDLLNSKEYARIADLAEALDGLLEEGAYAQRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  ++     L  +    R+G S+QRYKGLGEMN  QLWETT++P++R +++V I DA  
Sbjct: 714 KQPVSSFEDALAWLTKESRRGFSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAVA 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD+LF+ LMGD+VEPRR FI+EN+L    LDI
Sbjct: 774 ADELFTTLMGDQVEPRRNFIEENALRVSNLDI 805


>gi|288932896|ref|YP_003436955.1| DNA gyrase subunit beta [Klebsiella variicola At-22]
 gi|288887625|gb|ADC55943.1| DNA gyrase, B subunit [Klebsiella variicola At-22]
          Length = 804

 Score =  950 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+  +++  +++G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         +   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ +           D++      + L + LN   +     K +   +G + 
Sbjct: 599 RRFPKAMLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDVRENGELQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 QFEPIIRVRTHGVDTDYPLDNEFIMGPEYRRICTLGEKLRGLMEEDAYIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|149191879|ref|ZP_01870113.1| DNA gyrase subunit B [Vibrio shilonii AK1]
 gi|148834271|gb|EDL51274.1| DNA gyrase subunit B [Vibrio shilonii AK1]
          Length = 805

 Score =  950 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/812 (50%), Positives = 552/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CNDIIVTIHEDNSVSVSDDGRGIPTEMHPEEQVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G I+  ++ +G  + PL V G   + TGTE+ F PS +
Sbjct: 116 HGVGVSVVNALSKKVTLTIHRGGQIHTQTYHHGEPEAPLTVIGDT-DKTGTEIRFWPSEE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     ++GGI+AFV +L+ +K
Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFMFEGGIQAFVEHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIQKIFHFDNERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLVENPGEAKIVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y ++ +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVSLALDNAALHVNSEAPALAGEALEKLVQQYNAAVK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652
            +      +    + + +       E   D     + + +L  +LN           E  
Sbjct: 594 TVDRMSRRYPHAMVGEFMYVPRLTAEQCHDAAAVEAWSKQLVEQLNNKEVGASQYSFEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  +   V     GV  + V+    + S   +     S  ++        +     
Sbjct: 654 QHAELGVNLPKVVVRTHGVTHEHVISVDLLNSKEYRQLADTSEALDGLIEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
             ++T     L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQEVTNFVDALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|152972606|ref|YP_001337752.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|330005216|ref|ZP_08305175.1| DNA gyrase, B subunit [Klebsiella sp. MS 92-3]
 gi|150957455|gb|ABR79485.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|328536348|gb|EGF62710.1| DNA gyrase, B subunit [Klebsiella sp. MS 92-3]
          Length = 804

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+  +++  + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         +   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ +           D++      + L + LN   +     K +   +  + 
Sbjct: 599 RRFPKALLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDLHENKELQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           + + +++    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 HFEPVIRVRTHGVDTDYPLDNEFIMGPEYRRICALGEKLRGLMEEDAYIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|262273133|ref|ZP_06050950.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886]
 gi|262222889|gb|EEY74197.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886]
          Length = 805

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/806 (49%), Positives = 551/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ DGS +V D+GRGIP D+H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDGSVSVKDDGRGIPVDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L+L I R G++++  +  G+ + PL V G   ++TGT + F PS + FS   
Sbjct: 122 VVNALSEKLELTIWRHGHVHQQIYRMGVPEKPLEVIGDT-DETGTRIRFWPSDETFSDTT 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI AFV +L+R+K P+  +
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLIDER-EENKHDHFMYEGGIRAFVEHLNRNKTPIHPT 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
               +  R++ +S++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++
Sbjct: 240 VFHFEHEREDGVSVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNNFMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L+
Sbjct: 300 KEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P ++KI+  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 EFLIENPQDSKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E++E Y ++ +L             ++   L   +     + KLIK   
Sbjct: 540 KGKQEQYIKDDEAMEQYQVSIALENASLYVNQDAPALNGLALEELVKQYNGVMKLIKRMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             +    + + V     + +    +    +    L   LN  +      ++E  +     
Sbjct: 600 RRYPHAMLNELVYQPRLSVDTLKSESDVRAWIDTLVAVLNKNSTGESQYRAEVKFDEEHQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                +     GV  ++++    + S         S  +         +     K  +  
Sbjct: 660 AYQPELIVRTHGVDHEYLISYDLLNSKEYGRIADLSEALNGLLDDTAYIQRGERKQPVKS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L  +     +G++ QRYKGLGEMN  QLWETT++P++R ++RV I DA  AD+LF+
Sbjct: 720 FADALAWLIKESNRGLTRQRYKGLGEMNPDQLWETTMDPESRRMMRVTIQDAVAADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR FI++N+L    LD+
Sbjct: 780 TLMGDHVEPRRAFIEDNALKVANLDV 805


>gi|251787656|ref|YP_003002377.1| DNA gyrase subunit B [Dickeya zeae Ech1591]
 gi|247536277|gb|ACT04898.1| DNA gyrase, B subunit [Dickeya zeae Ech1591]
          Length = 803

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/810 (50%), Positives = 546/810 (67%), Gaps = 21/810 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G    PL V G A + TGT V F PS + F+   
Sbjct: 122 VVNALSEKLELVIRREGKIHRQEYKHGEPQAPLGVIGDA-DATGTTVRFWPSLETFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L D+R    +     Y+GGI+AFV YL+R+K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDEREA-NKADHFHYEGGIKAFVEYLNRNKTPIHP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 240 QVFYFSAEKDDIGVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +ND L 
Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNDRLV 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 360 DYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G ++I +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L             ++   L   +     + KLI    
Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAHAPALAGEPLEKLVAGHYGVQKLIDRME 599

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI------ 657
             + +  +   +            Q    S    L   LN      EK  HGS       
Sbjct: 600 RRYPRALLNALIYQPSLTETMLNSQAEAQSWMEALIQYLN------EKEQHGSTYSFILR 653

Query: 658 ---NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                 + +++    GV   + L+ + +     +       ++         +     K 
Sbjct: 654 QVNERHEPVLRVRTHGVDSDYALDLAFVQGNEYRKINGLGEKLRGLIEDGAFVERGERKQ 713

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +      LD +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD
Sbjct: 714 PVVSFEQALDWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAAD 773

Query: 775 DLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +LF+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 774 ELFTTLMGDAVEPRRAFIEENALKAANIDI 803


>gi|221640845|ref|YP_002527107.1| DNA gyrase subunit B [Rhodobacter sphaeroides KD131]
 gi|221161626|gb|ACM02606.1| DNA gyrase subunit B [Rhodobacter sphaeroides KD131]
          Length = 811

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/811 (55%), Positives = 585/811 (72%), Gaps = 10/811 (1%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++  +    Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MAEAARVPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +A  +TV ++ D S +V DNGRGIP D+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HATAVTVKIHADSSVSVRDNGRGIPVDMHASEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F NG     L V   A  + GTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGREHFARFENGETVEHLRVVRDAPGEKGTEVRFLASA 180

Query: 180 DI------FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
                   FS  D+++ TL+ RLREL+FLNS V+I L D+R  EP    +FY+GG+  FV
Sbjct: 181 KTNRPDGTFSNLDYSFKTLEARLRELAFLNSGVRILLEDERPAEPLHSELFYEGGVREFV 240

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YLDR K P+M  PI I G R  I +++AM WND YHE VL FTNNIPQ+DGGTHL+G R
Sbjct: 241 RYLDRSKSPVMPEPIFITGERGGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFR 300

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR IT Y + S  ++++K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR
Sbjct: 301 GALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 360

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VE+ VN+ L+ W EE+P  AK IV K+++A++ R+AAR+AR++TRRK  +D+ASLPGK
Sbjct: 361 PAVENLVNEKLAEWFEENPATAKSIVGKIVEAALAREAARKAREMTRRKTAMDVASLPGK 420

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS+ 
Sbjct: 421 LADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGKILNVERARFDRMLSSET 480

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +GTLITALG GIG+D FDI KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP++I  GF
Sbjct: 481 VGTLITALGAGIGRDEFDIAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIEGGF 540

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LYI +PPLY + RGKS  Y+KD+ +L+DYLI+Q +   I      +  I+  DL   I+ 
Sbjct: 541 LYIAQPPLYKVARGKSEVYLKDQAALDDYLIHQGIEGAILRLATGEE-IAGQDLLRVIEG 599

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
           A +  +++  F  ++ +  +EQA +SG F+     +    +A ++A RL+  A + E+ W
Sbjct: 600 ARQFRRVLDGFPTHYPRNILEQAALSGAFDPGRADDDLQLVADRVAERLDLTAAEYERGW 659

Query: 654 HGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            G I  +  I + R+ RGV+E   L+G+ + S  ++     S +  + Y     L+    
Sbjct: 660 KGRITQDHGIRLSRVLRGVEELRTLDGAVLRSGEARRLSQVSGQTRDVYAPGARLVRKDR 719

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  I GP +LL  + + G KG+S+QRYKGLGEMN  QLWETTL+P+ R+LL+VK+ D ++
Sbjct: 720 EQPIHGPIALLKAVLAEGEKGLSLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDDLAE 779

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           ADD+F++LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 ADDIFTKLMGDVVEPRREFIQQNALNVENLD 810


>gi|260429429|ref|ZP_05783406.1| DNA gyrase, B subunit [Citreicella sp. SE45]
 gi|260420052|gb|EEX13305.1| DNA gyrase, B subunit [Citreicella sp. SE45]
          Length = 805

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/805 (56%), Positives = 584/805 (72%), Gaps = 4/805 (0%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++       Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MAEPAGAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ D S +V DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HADFVRVKIHADNSVSVRDNGRGIPVDMHHEEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F +G     L V G A  + GTEV FL S+
Sbjct: 121 LHGVGVSVVNALSVWLELRIWRNGKEHYAKFEHGETTEHLRVVGEAPGEKGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             FS  DF++ TL+ RLREL+FLNS V+I L D+R  EP  I + Y GG++ FV YLDR 
Sbjct: 181 GTFSNLDFDFHTLEKRLRELAFLNSGVRIILEDERPAEPLRIELHYDGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+M  PI + G +D I +++AM WND YHE VL FTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 241 KQPMMPDPIYMTGEKDGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +T Y   S  +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ 
Sbjct: 301 LTRYATDSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EEHP EAKIIV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 VNEKLTEWFEEHPNEAKIIVGKIVEAALAREAARKARELTRRKNPMDVNFLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+ELF+VEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTELFIVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I KLRYHKII+MTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIILMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS  YVKD+ +L+ YLI+Q +         S  VI   DLR  ID+A ++ +
Sbjct: 541 PLYKVSRGKSEVYVKDQAALDAYLIDQGIDGAHL-TLGSGEVIVGQDLRRIIDEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F   +       +A ++A RL+ IA + EK W G I  
Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADRVAQRLDLIAVEYEKGWTGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++  Y T  +L     +  I G
Sbjct: 660 DRGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQALQAIYSTASTLERKDRRQAIYG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL+ I   G KG+++QRYKGLGEMN  QLWETTL+PD R+LL+V++ D ++ADD+F+
Sbjct: 720 PLGLLEGILEEGEKGLALQRYKGLGEMNPGQLWETTLDPDARTLLQVRVDDLTEADDIFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804


>gi|296100375|ref|YP_003610521.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295054834|gb|ADF59572.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 803

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/806 (50%), Positives = 550/806 (68%), Gaps = 13/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+ + PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L+E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 DYLQENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+++++ Y I  +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDDAMDQYQIAIALDGATLHANSSAPALAGEPLERLVSEFNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI-----N 658
             + K  +++ +           +++      + L + LN   E+    W   +      
Sbjct: 599 RRYPKALLKELIYQPTLTEADLSNEQAVTRWVNALVSELNEK-EQHGSQWKFDVQQNAAQ 657

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + LE   +     +       ++         +     +  +  
Sbjct: 658 QFEPIIRVRTHGVDTDYPLEHEFVTGPEYRRICTLGEKLRGLIEDDAFIERGERRQPVAS 717

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 718 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 777

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 778 TLMGDAVEPRRAFIEENALKAANIDI 803


>gi|146309671|ref|YP_001174745.1| DNA gyrase subunit B [Enterobacter sp. 638]
 gi|145316547|gb|ABP58694.1| DNA gyrase subunit B [Enterobacter sp. 638]
          Length = 804

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/806 (49%), Positives = 545/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHGDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I REG  +   + +G+   PL VTG     TGT V F PS + FS   
Sbjct: 122 VVNALSQKLELVIYREGKAHHQVYSHGVPQAPLAVTGDTE-KTGTTVRFWPSHETFSNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGG HL G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGAHLVGFRTAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP +S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPARS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L             ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGASLHANAFAPALAGEPLEKLVSEYNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               +T ++  V           D++      ++L   LN   +     K +   +  ++
Sbjct: 599 RRFPRTLLKALVYQPTLTEADLSDEQTVTRWINQLITDLNENEQHGSMWKFDVRENAELH 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   +     +       ++         +     +  +  
Sbjct: 659 QFEPIVRVRTHGVDTDYPLDHEFVTGGEYRRLCTLGEKLRGLIEDDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+ +QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLYIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|77464924|ref|YP_354428.1| DNA gyrase subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|126460793|ref|YP_001041907.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|332559823|ref|ZP_08414145.1| DNA gyrase subunit B [Rhodobacter sphaeroides WS8N]
 gi|77389342|gb|ABA80527.1| DNA gyrase subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|126102457|gb|ABN75135.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|332277535|gb|EGJ22850.1| DNA gyrase subunit B [Rhodobacter sphaeroides WS8N]
          Length = 811

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/811 (55%), Positives = 585/811 (72%), Gaps = 10/811 (1%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++  +    Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MAEAARVPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +A  +TV ++ D S +V DNGRGIP D+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HATAVTVKIHADSSVSVRDNGRGIPVDMHASEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F NG     L V   A  + GTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGREHFARFENGETVEHLRVVRDAPGEKGTEVRFLASA 180

Query: 180 DI------FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
                   FS  D+++ TL+ RLREL+FLNS V+I L D+R  EP    +FY+GG+  FV
Sbjct: 181 KTNRPDGTFSNLDYSFKTLEARLRELAFLNSGVRILLEDERPAEPLHSELFYEGGVREFV 240

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YLDR K P+M  PI I G R  I +++AM WND YHE VL FTNNIPQ+DGGTHL+G R
Sbjct: 241 RYLDRSKSPVMPEPIFITGERGGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFR 300

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR IT Y + S  ++++K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR
Sbjct: 301 GALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 360

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VE+ VN+ L+ W EE+P  AK IV K+++A++ R+AAR+AR++TRRK  +D+ASLPGK
Sbjct: 361 PAVENLVNEKLAEWFEENPAIAKSIVGKIVEAALAREAARKAREMTRRKTAMDVASLPGK 420

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS+ 
Sbjct: 421 LADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGKILNVERARFDRMLSSET 480

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +GTLITALG GIG+D FDI KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP++I  GF
Sbjct: 481 VGTLITALGAGIGRDEFDIAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIEGGF 540

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LYI +PPLY + RGKS  Y+KD+ +L+DYLI+Q +   I      +  I+  DL   I+ 
Sbjct: 541 LYIAQPPLYKVARGKSEVYLKDQAALDDYLIHQGIEGAILRLATGEE-IAGQDLLRVIEG 599

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
           A +  +++  F  ++ +  +EQA +SG F+     +    +A ++A RL+  A + E+ W
Sbjct: 600 ARQFRRVLDGFPTHYPRNILEQAALSGAFDPGRADDDLQLVADRVAERLDLTAAEYERGW 659

Query: 654 HGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            G I  +  I + R+ RGV+E   L+G+ + S  ++     S +  + Y     L+    
Sbjct: 660 KGRITQDHGIRLSRVLRGVEELRTLDGAVLRSGEARRLSQVSGQTRDVYAPGARLVRKDR 719

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  I GP +LL  + + G KG+S+QRYKGLGEMN  QLWETTL+P+ R+LL+VK+ D ++
Sbjct: 720 EQPIHGPIALLKAVLAEGEKGLSLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDDLAE 779

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           ADD+F++LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 ADDIFTKLMGDVVEPRREFIQQNALNVENLD 810


>gi|262040463|ref|ZP_06013706.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259042216|gb|EEW43244.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 804

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+  +++  + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILVKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         +   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ +           D++      + L + LN   +     K +   +  + 
Sbjct: 599 RRFPKALLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDLHENKELQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           + + +++    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 HFEPVIRVRTHGVDTDYPLDNEFIMGPEYRRICALGEKLRGLMEEDAYIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|332288569|ref|YP_004419421.1| DNA gyrase subunit B [Gallibacterium anatis UMN179]
 gi|330431465|gb|AEC16524.1| DNA gyrase subunit B [Gallibacterium anatis UMN179]
          Length = 806

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/810 (49%), Positives = 552/810 (68%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSNQT-SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP  +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CKDIIVTIHEDNSVSVQDDGRGIPVGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+REG+++E  +  G    PL V G + + TGT V F PS  
Sbjct: 120 HGVGVSVVNALSDKLQLTIRREGHVHEQFYRLGEPQAPLAVIGES-DKTGTTVRFWPSPS 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F Y+ L  RLRELSFLNS V I LID R+   R     Y+GGI+AFV YL+++K
Sbjct: 179 IFSDTEFQYEVLSKRLRELSFLNSGVSIRLIDLRT--NRSDHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P  +   +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR +
Sbjct: 237 NPIHSKPFYLNTEKDGIGVEVALQWNDGFQENLYCFTNNIPQRDGGTHLAGFRAAMTRTL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+EK   +KK K ++ GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+SVVES V
Sbjct: 297 NNYMEKEGYNKKSKVAMAGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEVKSVVESAV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKIIV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ER
Sbjct: 357 GERLQEYLLENPNDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD+MLSSQE+  LITA
Sbjct: 417 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDRMLSSQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD++++  Y +  +L         +   +    L N + +  +++K+
Sbjct: 537 LYKVKKGKQEQYIKDDDAMTQYELAIALDGAALYVNPTAPAMQGLPLENLVAEYNRVNKM 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLA-----NRLNFIAEKSEKSW 653
           I      +    + + +            +E   S    L        L+     ++  +
Sbjct: 597 INRVSRRYPAAILRELIYQDDLTPALMQQEEAVKSWVDALVATLARKELHGTHYSAKVQY 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +   +  + ++     G+     L+   I            +++         +     +
Sbjct: 657 NAERHLYEPVITVRTHGIDTDHALDFHFIEGSEYALLLKLGHQLRNLLEEGAYVTRGERR 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + ++     +D +    R+G+S+QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 717 LNVSSFEQAIDWLVKESRRGLSVQRYKGLGEMNPEQLWETTMDPEARRMLKVSIRDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D +F+ LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 777 DQIFTTLMGDEVEPRRDFIETNALHANLDI 806


>gi|202078776|gb|ACH96434.1| DNA gyrase subunit B [Edwardsiella tarda]
          Length = 804

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/805 (50%), Positives = 548/805 (68%), Gaps = 12/805 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G+++E  + +G+   PL V G     TGT V F PS + FS   
Sbjct: 122 VVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDTE-QTGTRVRFWPSMETFSNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLRDKRND--REDHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E
Sbjct: 239 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYME 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
               +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 299 NEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +A I+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAYIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y ++ +L         +   ++   L   + +  ++ KLI    
Sbjct: 539 KGKQEQYIKDDEAMDQYQMSIALDGAALHINAAAPALAGEPLEKLVAEHYQVQKLIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS-----WHGSIN 658
             + K  + Q +     +     +Q       + L   LN   +           +    
Sbjct: 599 RRYPKAVLNQLIYQPTLSEADLGNQAQVEQWINSLVATLNEKEQHGSVYSARVLENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + LV+    GV   +  +   +     +       ++ +       +     +  +  
Sbjct: 659 MFEPLVRVRTHGVDTDYAFDFDFVHGAEYRRICALGEKLRDLLEESAFVERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P+ R +LRV I DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVTIKDAVAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
            LMGD VEPRR FI+EN+L +  LD
Sbjct: 779 TLMGDAVEPRRAFIEENALKASNLD 803


>gi|89069843|ref|ZP_01157178.1| DNA gyrase subunit B [Oceanicola granulosus HTCC2516]
 gi|89044644|gb|EAR50760.1| DNA gyrase subunit B [Oceanicola granulosus HTCC2516]
          Length = 805

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/805 (54%), Positives = 587/805 (72%), Gaps = 4/805 (0%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++       Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MAEPERIPEDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ D S +VSDNGRGIP D+H+ EG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADHVHVKIHADSSVSVSDNGRGIPVDIHQGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LR+ R G  +   F +G     L V G A   +GTEV FL S+
Sbjct: 121 LHGVGVSVVNALSVWLELRVWRNGKEHVARFEHGETVEHLKVVGDAHGRSGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  D+++ TL+ RLREL+FLNS V+I L D R  EP  + +FY+GG++ FV YLDR 
Sbjct: 181 DTFSNLDYDFHTLEKRLRELAFLNSGVRIILEDDRPAEPLHVELFYEGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  ++  PI ++G RD+I++++AM WND Y+E VL FTNNIPQ+DGGTH++G R+ALTR 
Sbjct: 241 KSAMLPEPIHVEGMRDDITVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +T Y  +S  +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES 
Sbjct: 301 VTKYATESGIAKREKVNFTGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L+ W EE+P +AK+IV K+++A+  R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 VSEKLAEWFEENPGQAKMIVSKIVEAAQAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP ++E+FLVEGDSAGGSA+ GR R  QA+LPL+GKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPTQTEVFLVEGDSAGGSAQTGRDRRTQAVLPLKGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FDI+KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI NG +YI +P
Sbjct: 481 ALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPQLIENGHIYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RG+S  Y+KD+ ++++YLI Q +          +  I   DL+  +++A ++ +
Sbjct: 541 PLYKVSRGRSEVYLKDQAAMDEYLIEQGVDGAALRLGTGEE-IVGQDLKRVVEEARQLRR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           +++ F  ++ +  +EQA I+G F     +     +A K+A RL+ IA + E+ W G I  
Sbjct: 600 VLEAFPTHYPRHILEQAAIAGAFVSGEVERDLQGVADKVAARLDLIALEYERGWQGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++E Y T  +L        I G
Sbjct: 660 DKGIRLARILRGVEEVRTLDGPMLRSGEARRSGSFTQSLQEVYGTAATLYRKDRSQVIYG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G +G+++QRYKGLGEMN  QLWETTL+PD R+ L+VKI D ++ADDLF+
Sbjct: 720 PLGLLQAILEEGERGLTLQRYKGLGEMNPEQLWETTLDPDARTFLQVKIDDVTEADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804


>gi|206576571|ref|YP_002235889.1| DNA gyrase, B subunit [Klebsiella pneumoniae 342]
 gi|206565629|gb|ACI07405.1| DNA gyrase, B subunit [Klebsiella pneumoniae 342]
          Length = 804

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+  +++  +++G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         +   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ +           D++      + L + LN   +     K +   +  + 
Sbjct: 599 RRFPKAMLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDVRENSELQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 QFEPIIRVRTHGVDTDYPLDNEFIMGPEYRRICTLGEKLRGLMEEDAYIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|241206955|ref|YP_002978051.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860845|gb|ACS58512.1| DNA gyrase, B subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 811

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 517/806 (64%), Positives = 652/806 (80%), Gaps = 5/806 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++N  ++ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 7   TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           DI+TVTLN DGS TV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 67  DIVTVTLNPDGSVTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WLKL+I+R   I+EMSF +G+ D PL VTG A N+TGTEV+F+PS+  
Sbjct: 127 GVGVSVVNALSVWLKLKIRRHDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSFMPSTGT 186

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV+YLDR KK
Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELRYDGGLEAFVAYLDRAKK 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L+  P+ I G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ 
Sbjct: 247 SLVDKPVAIHGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY + S  +K++K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN
Sbjct: 307 SYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + LS W EEHP EAKI+V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADCSERD
Sbjct: 367 EALSTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL
Sbjct: 427 PTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D F++ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +PPL
Sbjct: 487 GTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPQLIERGHLYIAQPPL 546

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y ++RGKS+QY+KDE++LE+YLI+Q L +       S  V +  DLR  I DAL++  L+
Sbjct: 547 YKVSRGKSVQYLKDEKALEEYLISQGLEDASL-RLGSGEVRAGQDLREVILDALRMRALL 605

Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
            + +  ++++ +EQA I+G  N E  SD    ++LA+++A RL+ IAE++E+ W G +  
Sbjct: 606 DNLHSRYNRSAVEQAAIAGALNAELASDPARALALANEVAGRLDIIAEETERGWRGDVTT 665

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  + ++R+ RGV+E  VL+ + I S  +++    + R++E Y T  SL      I+I+G
Sbjct: 666 DGGLRLERMVRGVRELVVLDMALIGSSDARHIDQLTARLKEIYQTPPSLHRREGDIEISG 725

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+V++ DA+ AD LF+
Sbjct: 726 PRALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDATDADGLFA 785

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           RLMGDEVEPRREFIQEN+L    LDI
Sbjct: 786 RLMGDEVEPRREFIQENALSVANLDI 811


>gi|116249778|ref|YP_765616.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254426|emb|CAK05500.1| putative DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 811

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/806 (64%), Positives = 653/806 (81%), Gaps = 5/806 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++N  ++ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 7   TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           DI+TVTLN DGS TV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 67  DIVTVTLNPDGSVTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WLKL+I+R   I+EMSF +G+ D PL VTG A N+TGTEV+F+PS+D 
Sbjct: 127 GVGVSVVNALSVWLKLKIRRHDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSFMPSTDT 186

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV+YLDR KK
Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELRYDGGLEAFVAYLDRAKK 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L+  P+ I G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ 
Sbjct: 247 SLVDKPVAIHGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY + S  +K++K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN
Sbjct: 307 SYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ W EEHP EAKI+V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADCSERD
Sbjct: 367 EALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL
Sbjct: 427 PTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D F++ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +PPL
Sbjct: 487 GTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPQLIERGHLYIAQPPL 546

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y ++RGKS+QY+KDE++LE+YLI+Q L +       S  V +  DLR  I DAL++  L+
Sbjct: 547 YKVSRGKSVQYLKDEKALEEYLISQGLEDASL-RLGSGEVRAGQDLREVILDALRMRALL 605

Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
            + +  ++++ +EQA I+G  N E  SD    ++LA+++A RL+ IAE++E+ W G +  
Sbjct: 606 DNLHSRYNRSAVEQAAIAGALNAELASDPARALALANEVAGRLDIIAEETERGWRGDVTT 665

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  + ++R+ RGV+E  VL+ + I S  +++    + R++E Y T  SL      I+I+G
Sbjct: 666 DGGLRLERMVRGVRELVVLDMALIGSSDARHIDQLTARLKEIYQTPPSLHRREGDIEISG 725

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+V++ DA+ AD LF+
Sbjct: 726 PRALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDATDADGLFA 785

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           RLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 786 RLMGDEVEPRREFIQDNALSVANLDI 811


>gi|56695080|ref|YP_165427.1| DNA gyrase subunit B [Ruegeria pomeroyi DSS-3]
 gi|56676817|gb|AAV93483.1| DNA gyrase, B subunit [Ruegeria pomeroyi DSS-3]
          Length = 805

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/805 (55%), Positives = 585/805 (72%), Gaps = 4/805 (0%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+     + Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MSEIEQPGNEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TV ++ D S +V+DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADHVTVKIHADSSVSVADNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRHGKEHVARFERGDTVEHLRVVGECGDRTGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             FS  D+ ++TL+ RLREL+FLNS V+I LID+R  E  E  +FY+GG+  FV YLDR 
Sbjct: 181 TTFSNLDYVFETLEKRLRELAFLNSGVRIILIDERPAERIETELFYEGGVREFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+M +PI  +G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KSPVMPAPIYFKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y + S  +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ 
Sbjct: 301 INNYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L+ W EE+P  AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE
Sbjct: 361 VNEKLAEWFEENPNVAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGKS  Y+KD+ +L+DYLI+Q +   +     +   I   DL   +++A ++ +
Sbjct: 541 PLYKVARGKSEVYLKDQAALDDYLIHQGVEGAVLKLG-NGEEIVGQDLTRVVEEARQLKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F   +       +A K+A RL+ IA + E+ W G I  
Sbjct: 600 VLDAFPTHYPRHIMEQAAVAGAFVAGAVDADLQGVADKVAARLDLIALEYERGWLGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F+  ++E Y     L+       I G
Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTRSLQEIYTQPAMLVRRDRTQAIHG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P +LL  I   G KG+++QRYKGLGEMN  QLWETTL+PD R+LL+V++ D  +ADD+F+
Sbjct: 720 PLTLLKAILDEGEKGLTLQRYKGLGEMNPEQLWETTLDPDARTLLQVRVNDMVEADDIFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDSVEPRREFIQQNALSVENLD 804


>gi|325577000|ref|ZP_08147571.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160958|gb|EGC73077.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 808

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/811 (49%), Positives = 538/811 (66%), Gaps = 11/811 (1%)

Query: 1   MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  ++Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G
Sbjct: 1   MSETPVTENAYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGG
Sbjct: 61  YCSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L+L I+R+G+++E  +  G    PL V G     TGT V F PS 
Sbjct: 121 LHGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQGPLTVIGET-QTTGTTVRFWPSP 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++
Sbjct: 180 EIFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGTE--DHFHYEGGIQAFVEYLNKN 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 238 KNPIHPKPFYFSAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRS 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E     KK+K S  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 298 LNNYMESEGLLKKEKVSTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESA 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 358 MNERMQEYLLENPADAKIIVNQIITAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 418 KDPALSELYLVEGDSAGGSAKSGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 478 ALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  +Y+KD + +  Y +  +L         +   ++       + +   + K
Sbjct: 538 PLYKVKKGKQERYIKDNDEMVQYELMLALDSAALHISANAPAMNDLVFEKLVGEYNNVQK 597

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE-----KS 652
           LI      + +  ++  V       +   ++    + A+     L     ++        
Sbjct: 598 LITRLSRYYPEPLLQGLVYQPQLTVDLMRNESAVENWANAFVAYLTEKETEAHLYSARTQ 657

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++      + ++     G+   + +    +          F  ++         +     
Sbjct: 658 FNSERQVYEAVITVRKHGIDTDYFINFDFVTGNEFAKISTFGQQVNGLLEEGAYVTRGEK 717

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              +      ++ +    R+G+ +QRYKGLGEMNA QLWETT++P+ R +L+V I DA  
Sbjct: 718 TQPVQSFEQAVEWLMKESRRGLEIQRYKGLGEMNAEQLWETTMDPNARRMLKVSIKDAVA 777

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           AD LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 778 ADQLFTTLMGDEVEPRREFIEMNALRANLDV 808


>gi|295095337|emb|CBK84427.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 803

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 551/806 (68%), Gaps = 13/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+ D PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+++++ Y I  +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDDAMDQYQIAIALDGATLHANSSAPALAGEPLERLVSEFNATQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI-----N 658
             + K  +++ +           +++      + L + LN   E+    W   +      
Sbjct: 599 RRYPKALLKELIYQPTLTEADLSNEQTVTRWVNTLVSELNEK-EQHGSQWKFDVQQNAEQ 657

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + LE   +     +       ++         +     +  +  
Sbjct: 658 QFEPIVRVRTHGVDTDYPLEHEFVTGPEYRRICTLGEKLRGLIEDDAFIERGERRQPVAS 717

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 718 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 777

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 778 TLMGDAVEPRRAFIEENALKAANIDI 803


>gi|315635217|ref|ZP_07890494.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aggregatibacter
           segnis ATCC 33393]
 gi|315475963|gb|EFU66718.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aggregatibacter
           segnis ATCC 33393]
          Length = 806

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/810 (50%), Positives = 546/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS      +Y A+SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSTTTPE-TYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDDIVVTIHSDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G ++E  +  G    PL V G     TGT V F PS  
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLAVIGETT-QTGTTVRFWPSPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  +F YD L  RLRELSFLNS V I LID+R+ +       Y+GGI+AFV Y++R K
Sbjct: 179 IFTNIEFEYDILAKRLRELSFLNSGVSIRLIDERTDKQ--DHFHYEGGIQAFVEYINRGK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDGY EN+ CFTNNIPQ+DGGTHL+G R A+TR +
Sbjct: 237 TPIHPKPFYFSAEKDGIGVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGFRGAMTRTL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKSSVESLM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P + KIIV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ER
Sbjct: 357 NEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 417 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++ ++ +  +L        ++   +    L+N   + L + K+
Sbjct: 537 LYKVKKGKQEQYIKDDEAMAEFELAIALENAALYVNENAPGMQGVALQNLASEYLAVQKM 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEK-----SEKSW 653
                  + ++ +++ +            +    S A  L   LN              +
Sbjct: 597 TTRLSRYYPESVLKELIYQPALTTALMQQESAVNSWADSLVASLNGKETDGRHYSYRLQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +   N  ++++     G+   + L    +             ++         ++    K
Sbjct: 657 NAERNLYEVVLTVRTHGIDTDYFLNFQFVTGNEYARLIALGEKLVGLLEENAYVMRGERK 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + +T     ++ +    R+G+ +QRYKGLGEMN  QLWETT++P+TR +L+V I DA  A
Sbjct: 717 VAVTSFEQAIEWLMKESRRGLMIQRYKGLGEMNPEQLWETTMDPNTRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LDI
Sbjct: 777 DQLFTTLMGDEVEPRREFIESNALRANLDI 806


>gi|301155295|emb|CBW14761.1| DNA gyrase, subunit B [Haemophilus parainfluenzae T3T1]
          Length = 808

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/811 (49%), Positives = 538/811 (66%), Gaps = 11/811 (1%)

Query: 1   MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  ++Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G
Sbjct: 1   MSETPVTENAYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGG
Sbjct: 61  YCSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L+L I+R+G++YE  +  G    PL + G     TGT V F PS 
Sbjct: 121 LHGVGVSVVNALSDKLQLTIRRQGHVYEQFYHLGEPQGPLTIIGET-QATGTTVRFWPSP 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++
Sbjct: 180 EIFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGTE--DHFHYEGGIQAFVEYLNKN 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 238 KNPIHPKPFYFSAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRS 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E     KK+K S  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 298 LNNYMESEGLLKKEKVSTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESA 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 358 MNERMQEYLLENPADAKIIVNQIITAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 418 KDPALSELYLVEGDSAGGSAKSGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 478 ALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  +Y+KD + +  Y +  +L         +   ++       + +   + K
Sbjct: 538 PLYKVKKGKQERYIKDNDEMVQYELMLALDGAALHISANAPAMNDLVFEKLVSEYNNVQK 597

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE-----KS 652
           LI      + +  ++  V       +   ++    + A+     L     ++        
Sbjct: 598 LITRLSRYYPEPLLQGLVYQPQLTVDLMRNESAVENWANAFVAYLTEKETEAHLYSARTQ 657

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++      + ++     G+   + +    +          F  ++         +     
Sbjct: 658 FNSERQVYEAVITVRKHGIDTDYFINFDFVTGNEFAKITAFGQQVNGLLEEGAYVTRGEK 717

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              +      ++ +    R+G+ +QRYKGLGEMNA QLWETT++P+ R +L+V I DA  
Sbjct: 718 TQPVQSFEQAVEWLMKESRRGLEIQRYKGLGEMNAEQLWETTMDPNARRMLKVSIKDAVA 777

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           AD LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 778 ADQLFTTLMGDEVEPRREFIEMNALRANLDV 808


>gi|283787601|ref|YP_003367466.1| DNA gyrase subunit B [Citrobacter rodentium ICC168]
 gi|282951055|emb|CBG90733.1| DNA gyrase subunit B [Citrobacter rodentium ICC168]
          Length = 804

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 548/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+  I+   +++G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDNKIHRQIYVHGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLKDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   +S   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALSGEALEKLVSEYNAAQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           D++      + L   LN         K +   +   N
Sbjct: 599 RRFPKALLKELVYQPTLVEADLADEQKVTRWVNALITELNEKERHGSMWKFDIQHNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   +     +       ++         +     +  +  
Sbjct: 659 LYEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|121998014|ref|YP_001002801.1| DNA gyrase subunit B [Halorhodospira halophila SL1]
 gi|121589419|gb|ABM61999.1| DNA gyrase subunit B [Halorhodospira halophila SL1]
          Length = 807

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/812 (50%), Positives = 536/812 (66%), Gaps = 14/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I    YD++SIQ+L+GLDAV+KRP MYIGDTD  +GLHHM++EVLDN+IDE+L G+
Sbjct: 1   MTTEI-TPQYDSESIQVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              ITVTL+ D S TV+DNGRGIP D+H EEG+ AA+VIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSEITVTLHADHSVTVTDNGRGIPVDIHAEEGVPAAQVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+REG ++   + +G     L V G     TGT +TF PS  
Sbjct: 120 HGVGVSVVNALSERLRLVIEREGKVHVQEYADGAPVTSLKVVGETE-QTGTRITFKPSEA 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   +NYD L  R RELSFLN  V++ L D+R+ +       Y GGI AFV +L+R+K
Sbjct: 179 IFTEVQYNYDILAKRFRELSFLNPGVRVVLKDERTEKE--DVFEYTGGIRAFVEHLNRNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL  +   +   RD + +D+AM+WND Y EN+ CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 TPLHPTVFYVTAWRDGVGVDVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRGALTRTV 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+E     KK K +  G+D REG T+V+S+K PDP+FSSQTK+KLVSSEV+ +VES +
Sbjct: 297 NGYLEAEGYLKKLKSTPSGEDVREGLTAVVSVKAPDPKFSSQTKDKLVSSEVKGIVESLL 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++ L  +L EHP EA+ I ++V+ AS  R+AAR+AR++TRRK  LDIA LPGKLADC ER
Sbjct: 357 SESLQTFLAEHPPEARAIAERVIQASRAREAARKAREMTRRKDALDIAGLPGKLADCQER 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP KSE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 417 DPAKSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D FD +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQM  L+  G +YI +PP
Sbjct: 477 LGCGIGRDDFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMRELVERGNVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I RGK   YVKDE  L +YL+  +L             IS   L        +  +L
Sbjct: 537 LYKIKRGKQEHYVKDERELTEYLLELALDGSALHPGGGAPPISGEALGRLARRYYEAMEL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
           I+      D   +EQ         +   D +   +   +L  ++   A  +   +  ++ 
Sbjct: 597 IEHVSRRWDSAILEQMTTLAPRTEDDITDAQAMQAWFDQLVQQVEA-ATDASMRYRVTVQ 655

Query: 659 NS------DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                   + +V R   G+ +++        S      +  ++ ++        ++    
Sbjct: 656 RGPDGGFQEAIVTRRRHGLDQEYRFNPQFFLSAEYDTLKALASLLDGLLHEGAEVVRGER 715

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  +T     ++ +    ++G ++QRYKGLGEMN  QLWETT+NP+TR LLRV I DA  
Sbjct: 716 RRPVTSLREAVEWLMEEAKRGQTIQRYKGLGEMNPDQLWETTMNPETRRLLRVTIDDAVA 775

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD++F+ LMGD VEPRR+FI+ N+L    LD+
Sbjct: 776 ADEIFTTLMGDHVEPRRDFIERNALAVSNLDV 807


>gi|253686413|ref|YP_003015603.1| DNA gyrase, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251752991|gb|ACT11067.1| DNA gyrase, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 805

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/806 (50%), Positives = 546/806 (67%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I +
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  LKL I R+G ++E ++ +G+   PL VTG   N TGT V F PS + F+   
Sbjct: 122 VVNALSEKLKLVIHRDGKLHEQTYKHGVPQAPLAVTGET-NRTGTTVRFWPSHETFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I LID+R  + +     Y GGI+AFV YL+R+K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDER-EKDKADHYHYDGGIKAFVDYLNRNKTPIHP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 240 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L 
Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLV 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 360 DYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P ++  G +YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L             ++   L   + +   + KLI    
Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAQAPALAGEPLEKLVSEHYAVQKLIGRME 599

Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEK-----SWHGSIN 658
               +  + + +     +     E     + A  L N LN                    
Sbjct: 600 RRFPRALLNRLIYQPTLSEADLNERENVQAWAESLVNSLNESELHGSTYSFVIHHDEERG 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  ++    GV   + L    +     +       ++         +     +  +  
Sbjct: 660 VFEPALRVRTHGVDTDYPLGAGFVAGSEYRKLNQLGEKLRGLIEEDAYIERGERRQPVAS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD+LF+
Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPNSRRMLRVTVKDAIAADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR FI+EN+L +  +DI
Sbjct: 780 TLMGDAVEPRRAFIEENALKAMNIDI 805


>gi|304398065|ref|ZP_07379940.1| DNA gyrase, B subunit [Pantoea sp. aB]
 gi|304354351|gb|EFM18723.1| DNA gyrase, B subunit [Pantoea sp. aB]
          Length = 802

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/804 (50%), Positives = 549/804 (68%), Gaps = 10/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L+L I+REG +++  +++G+  +PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELTIRREGKVHQQVYVHGVPQSPLAVTGET-DITGTRVRFWPSHETFTNVR 180

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F YD L  RLRELSFLNS V I L DKR  +       Y+GGI AFV YL+++K P+  
Sbjct: 181 DFEYDILAKRLRELSFLNSGVSIRLEDKRDGKN--DHFHYEGGIRAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 TVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         S   +    L   + D     K+IK   
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNASAPALGGEPLETLVSDFNSTQKMIKRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSINNS 660
             +    +   +     +  S++    +  + L + L            +   +   N  
Sbjct: 599 RRYPMAMLRAMIYHDTLSDLSNEAEVTTWLNGLVSYLTEREAHGSTYLAQVRENRETNLF 658

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +++    GV   + LE   I     +      +++         +     +  +    
Sbjct: 659 EPVLRVRTHGVDTDYPLEADFIQGPEYRKICALGSQLRGLLEEDAYIERGERRQPVASFE 718

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             ++ +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD LF+ L
Sbjct: 719 QAIEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIGADQLFTTL 778

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 779 MGDAVEPRRAFIEENALKAANIDI 802


>gi|152977818|ref|YP_001343447.1| DNA gyrase subunit B [Actinobacillus succinogenes 130Z]
 gi|150839541|gb|ABR73512.1| DNA gyrase, B subunit [Actinobacillus succinogenes 130Z]
          Length = 811

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/815 (51%), Positives = 562/815 (68%), Gaps = 16/815 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSENTAE-NYGAGSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CKDIIVTIHEDNSISVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G    PL + G +   TGT V F PSS 
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLKIIGDSE-KTGTTVHFWPSSA 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   F YD L+ RLRELSFLNS V I L D+R  +       Y+GGI+AFV +L+++K
Sbjct: 179 IFTKTVFEYDILKKRLRELSFLNSGVSIKLFDERDGKN--DHFHYEGGIQAFVEFLNQNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q P      ++ I +++A++WND Y+EN+ CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 TPIHQKPFYFTMEKEGIGVEVALQWNDSYNENIYCFTNNIPQRDGGTHLAGFRGALTRTL 296

Query: 301 TSYVEKS-----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
            +Y++KS       S KDK    GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+  
Sbjct: 297 NAYMDKSGLNKKGKSDKDKVDTSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKGA 356

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES +N+ L  +LEE+P +AKII  K+++A+  R+AAR+AR++TRRKGVLDIA LPGKLA
Sbjct: 357 VESAMNERLQEYLEENPNDAKIIATKIVEAARAREAARKAREMTRRKGVLDIAGLPGKLA 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+G
Sbjct: 417 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVG 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALG GIG+D ++  KLRYHKIIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 477 TLITALGCGIGRDEYNPEKLRYHKIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVY 536

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY + +GK  QY+KD+ES+  Y +  +L +      ++   ++   L N + +  
Sbjct: 537 IAQPPLYKVKKGKQEQYLKDDESMTQYELAIALEDAALYVNENAPAMNGLMLENLVSEFN 596

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-- 651
            + ++I   +  + +  ++  +          ++     + A+ L   L      S    
Sbjct: 597 GVQQMIARLHRRYPEILLKSLIYYPELTTSILEDQSAVENWANSLVKILEEQDTDSNHYR 656

Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
               ++G  N  DI++   A G+   ++L+ +   S           +I+        + 
Sbjct: 657 IRTQFNGERNMYDIVLTVRAHGIDTNYLLDFNFAHSNEYARVVNLGKKIDGLLEDTAYIQ 716

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               K  I+G    ++ + +  R+G+++QRYKGLGEMN  QLWETT++P+ R +L+V I 
Sbjct: 717 RGETKKPISGFEEGINWLVAQSRRGLTVQRYKGLGEMNPEQLWETTMDPEARHMLQVTIK 776

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           DA +AD LF+ LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 777 DAVEADQLFTTLMGDEVEPRRDFIETNALRANLDI 811


>gi|322830737|ref|YP_004210764.1| DNA gyrase, B subunit [Rahnella sp. Y9602]
 gi|321165938|gb|ADW71637.1| DNA gyrase, B subunit [Rahnella sp. Y9602]
          Length = 804

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/806 (49%), Positives = 549/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIQV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS-DIFSVQ 185
           VVNALS  L+L I+REG ++  ++++G   +PL V G   + TGT V F PS     +  
Sbjct: 122 VVNALSEKLELVIRREGKVHTQTYVHGEPQDPLKVIGDT-DVTGTTVRFWPSFNTFTNHT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L+DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVAIRLLDKRDGKN--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y++
Sbjct: 239 TVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 DYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ ++             ++   L   + +   + K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIAMDGATLHANAHAPALAGEPLEKLVAEHHSVQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658
             + +  +   +       +  +DQ    +    L  RLN   +           +    
Sbjct: 599 RRYPRALLNNLIYQPTLPGSDLTDQAKVQTWIESLVARLNEKEQHGSSYSAIVRENREHQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +       ++         +     +  +T 
Sbjct: 659 LFEPVLRIRTHGVDTDYDLDADFIQGGEYRKICALGEQLRGLIEEDAFIERGERRQPVTS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+ R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPEQRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|330827704|ref|YP_004390656.1| DNA gyrase subunit B [Aeromonas veronii B565]
 gi|328802840|gb|AEB48039.1| DNA gyrase subunit B [Aeromonas veronii B565]
          Length = 803

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/810 (50%), Positives = 535/810 (66%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ +I++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSENT----YDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ DGS +V DNGRGIP D+H+EEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 57  CSDILVKIHSDGSVSVRDNGRGIPVDMHEEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 117 HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPA 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 176 IFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 234 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 294 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 354 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 414 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP +I  G++YI +PP
Sbjct: 474 LGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KDE++L  Y    +L        +S   I    L   ++    +  L
Sbjct: 534 LYKVKKGKQEQYLKDEDALLQYQTAMALDGATLHVNESAPAIGGEALERLVNQHRSVSHL 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFN--CESDQEINVSLASKLANRLNF----IAEKSEKSWH 654
           I        +  + Q +     N    + +   +     +   LN     I  + +    
Sbjct: 594 ITRMSRRAPEAVLTQLIYQPELNEALLNSESDLLVWCQGMEAVLNESNHGIQYQIQVRRD 653

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
              +           GV  ++ L    + S   +        I         +       
Sbjct: 654 EERSLYVPHAVVRQHGVDREYPLSYDFLQSGEYRQLVSLGKEIANLIEEGGFIKRGEKVK 713

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +      ++ +   G++GI +QRYKGLGEMN  QLWETT++P+ R +LRV I DA  AD
Sbjct: 714 PVANFVEAVEWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRMLRVTIDDAVGAD 773

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LFS LMGD VEPRR+FI+ N+L    LD+
Sbjct: 774 QLFSTLMGDAVEPRRDFIETNALRVANLDV 803


>gi|315178623|gb|ADT85537.1| DNA gyrase, subunit B [Vibrio furnissii NCTC 11218]
          Length = 805

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/806 (49%), Positives = 555/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT+LH EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTELHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G ++  ++ +G+ + PL V G   + +GT V F PS++ F+  +
Sbjct: 122 VVNALSEKVVLTIHRGGKVHTQTYRHGVPEAPLAVVGDT-DRSGTMVRFWPSAETFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  RLRELSFLNS V I L+D+R  + ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYEILAKRLRELSFLNSGVSIKLVDER-EDNKQDHFMYEGGIQAFVNHLNRNKTPIHEK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R+ALTR + +Y++
Sbjct: 240 VFHFNSEREDGISVEVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L+
Sbjct: 300 KECYTKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLN 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P EAKI+  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 DFLAENPSEAKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDEE++  Y I  ++             ++   L   +       KLI+   
Sbjct: 540 KGKQEQYIKDEEAMNQYQIALAMDNAELHVNADAPALAGAPLEKLVQQYNAAIKLIERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +  + I + +       E   D+    +   +L ++LN     + +       +   N
Sbjct: 600 RRYPHSLIHEFIYMPRMTAEKCQDEAGAQAWTQQLIDQLNAKEVGASQYSFTLEHNAEHN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                +K    GV  +++L    + S         S  +         +        +  
Sbjct: 660 VYSPRIKVRTHGVTHEYLLSVDLLNSKEYGKLAELSEAMHGLIEDGAYIKRGERTQPVAS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + LD +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD+LF+
Sbjct: 720 FAAALDWLIKESRRGLSVQRYKGLGEMNPDQLWETTMDPETRRMMQVTIDDAVGADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LD+
Sbjct: 780 TLMGDQVEPRRAFIENNALKVANLDV 805


>gi|22127978|ref|NP_671401.1| DNA gyrase subunit B [Yersinia pestis KIM 10]
 gi|45443725|ref|NP_995264.1| DNA gyrase subunit B [Yersinia pestis biovar Microtus str. 91001]
 gi|21961123|gb|AAM87652.1|AE014012_9 DNA gyrase subunit B, type II topoisomerase [Yersinia pestis KIM
           10]
 gi|45438595|gb|AAS64141.1| DNA gyrase subunit B [Yersinia pestis biovar Microtus str. 91001]
          Length = 805

 Score =  948 bits (2450), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/808 (49%), Positives = 548/808 (67%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I
Sbjct: 1   MMSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  LVTIHADNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALS  L+L I+REG ++E ++  G+   PL V G     TGT V F PS   F +
Sbjct: 121 VSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGETE-QTGTTVRFWPSFQTFTN 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+
Sbjct: 180 NTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPI 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                     +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY
Sbjct: 238 HPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ 
Sbjct: 298 MDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP 
Sbjct: 358 LVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY 
Sbjct: 478 GIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KD++++E Y +  +L             ++   L   + +   + K I  
Sbjct: 538 VKKGKQEQYIKDDDAMEQYQMTLALDGAALHTNAHAPALAGEPLEKLVAEHYSVQKTIAR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFI-----AEKSEKSWHGS 656
               + +  +   +       E   ++E+       L   LN       +  S    +  
Sbjct: 598 MERRYPRALLNNLIYQPTLQEEDLGNKEVVTQWIDSLVVLLNEKEHHGSSYSSVVRENRE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
               + +++    GV   + L+   I     +   +  +++         +     ++ +
Sbjct: 658 RQLFEPILRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEDGAFVERGERRVPV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +     LD +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD L
Sbjct: 718 SSFEEALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVMVKDAIAADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803
           F+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 778 FTTLMGDAVEPRRAFIEENALRAANIDI 805


>gi|291615640|ref|YP_003518382.1| GyrB [Pantoea ananatis LMG 20103]
 gi|291150670|gb|ADD75254.1| GyrB [Pantoea ananatis LMG 20103]
          Length = 803

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/806 (50%), Positives = 549/806 (68%), Gaps = 10/806 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I
Sbjct: 1   MMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  VVTIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG +++  +++G+ + PL VTG   + TGT + F PS D F+ 
Sbjct: 121 VSVVNALSQKLELTIRREGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTN 179

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             DF YD L  RLRELSFLNS V I L  +   + R     Y+GGI AFV YL+++K P+
Sbjct: 180 VTDFEYDILAKRLRELSFLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPI 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y
Sbjct: 238 HPTVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ 
Sbjct: 298 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP 
Sbjct: 358 LAEYLLENPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG 
Sbjct: 418 LSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY 
Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KD+E++  Y I  +L         S   +    L   + +     K+IK 
Sbjct: 538 VKKGKQEQYIKDDEAMLQYQIAIALDGTSLHTTASAPALGGEPLETLVAEFNSTQKMIKR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSIN 658
               +    +   +     +  S++    S  + L + L            +   +   N
Sbjct: 598 MERRYPMAMLRALIYHDTLSDISNEAQVTSWINGLVSYLTAREAHGSTYLAQVRENREQN 657

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   +     +       ++         +     +  ++ 
Sbjct: 658 VFEPVLRVRTHGVDTDYPLDAEFLQGGEYRKICALGGKLRGLLEEDAYIERGERRQPVSS 717

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               +D +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD LF+
Sbjct: 718 FEQAIDWLEKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAIAADQLFT 777

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 778 TLMGDAVEPRRAFIEENALKAANIDI 803


>gi|270264122|ref|ZP_06192389.1| DNA gyrase subunit B [Serratia odorifera 4Rx13]
 gi|270041771|gb|EFA14868.1| DNA gyrase subunit B [Serratia odorifera 4Rx13]
          Length = 804

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/806 (49%), Positives = 544/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++ D S +V D+GRGIPT +H+EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  VIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++  G    PL V G   + TGT V F PS + F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFWPSYETFTNNV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 DYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  ++         +   ++   L   + +   + KLI    
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIAMDGATLHTNANAPALAGEPLEKLVAEHYSVQKLIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + +  +   +     N     DQ         L   LN   +      S    +    
Sbjct: 599 RRYPRALLNNLIYQPTLNESDLSDQGKVQVWIESLVKLLNDNEQHGSSYDSVIFENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+         +       ++         +     +  +  
Sbjct: 659 MFEPVLRIRTHGVDTDYPLDFEFFHGGEYRKICQLGEKLRGLIEEDAFIERGERRQPVDS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|89074699|ref|ZP_01161157.1| DNA gyrase subunit B [Photobacterium sp. SKA34]
 gi|89049463|gb|EAR55024.1| DNA gyrase subunit B [Photobacterium sp. SKA34]
          Length = 805

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ DGS +VSD+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDGSVSVSDDGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  ++L I+R G+ Y+  + +G+ D PL V G     TGT + F PS D F+  +
Sbjct: 122 VVNALSEKVELTIQRAGHTYQQVYRHGVPDAPLAVIGDTE-KTGTRIRFWPSEDTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  RLRELSFLNS V I+L D+R  E +E    Y+GGI AFV +L+R+K P+   
Sbjct: 181 FHYEILAKRLRELSFLNSGVSINLSDER-EEGKEDHFMYEGGIRAFVEHLNRNKTPIHPK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  RD+ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + S+++
Sbjct: 240 VFHFDSERDDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNSFMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L+
Sbjct: 300 KEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 EFLLENPSDAKTVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAVS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E +  Y    +L        D    ++   L + +       KLI+   
Sbjct: 540 KGKQEQYIKDDEDMNQYQTTLALDNASLFANDGAPAMTGTALESLVTQYNAGMKLIERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             +    + + V     + E   E     +  + L   LN           E       N
Sbjct: 600 RRYPSLMLNEFVYQPRLSTEMMAEEAQVEAWLTPLIAALNAKQSGESQYSFEIIRDEENN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                V     GV  +++L    + S         S  +         +     K  ++ 
Sbjct: 660 VYLPKVVVRTHGVDHEYLLSFDLLNSKEYAKIADLSEALNGLLDDTAFVQRGERKQAVSS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT++P++R +++V I DA  AD+LF+
Sbjct: 720 FKVALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAVAADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI++N+L    LD+
Sbjct: 780 CLMGDQVEPRRNFIEDNALKVANLDV 805


>gi|126730159|ref|ZP_01745971.1| DNA gyrase subunit B [Sagittula stellata E-37]
 gi|126709539|gb|EBA08593.1| DNA gyrase subunit B [Sagittula stellata E-37]
          Length = 807

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/805 (56%), Positives = 581/805 (72%), Gaps = 4/805 (0%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD    +  Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L  
Sbjct: 3   MSDQPSEAYEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAK 62

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ D S +V DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 63  HADYVHVKIHADSSVSVRDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 122

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R G  +   F +G     L V G A  + GTEV FL S+
Sbjct: 123 LHGVGVSVVNALSVWLELRIWRNGKEHYAKFEHGETSEHLRVVGDAEGEQGTEVRFLAST 182

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  D+++ TL+ RLREL+FLNS V+I L D R  EP  I + Y+GG+  FV YLDR 
Sbjct: 183 DTFSNLDYDFHTLEKRLRELAFLNSGVRIILDDDRPAEPLHIELHYEGGVREFVKYLDRS 242

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ +M  PI ++G +D I +++AM WND YHENVL FTNNIPQ+DGGTHL+G R ALTRQ
Sbjct: 243 KQAVMPDPIYMEGEKDGIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRQ 302

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  Y ++S  +K++K +  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEVR  VES 
Sbjct: 303 LQKYAQESGIAKREKINFTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 362

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ L  W EE+P EAK I  K+++A+M R+AAR+AR+LTRRK  +D++    KL DCSE
Sbjct: 363 MNEKLGEWFEENPNEAKQITGKIIEAAMAREAARKARELTRRKTAMDVSFNAAKLKDCSE 422

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  K+ELFLVEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L+ 
Sbjct: 423 KDASKTELFLVEGDSAGGSAQTGRDRRTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 482

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I+KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 483 ALGTGIGRDEFNISKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGKS  Y+KD+ +LEDYLI Q +      F  +  VI   DL   +++A ++ +
Sbjct: 543 PLYKVARGKSEVYLKDQTALEDYLIQQGIENAQL-FQGNGEVIVGQDLVRVVEEARQLKR 601

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA I+G F   +       +A K+A RL+ +A + E+ W G I  
Sbjct: 602 VLDAFPTHYPRHILEQAAIAGAFVPGAVDSDLQGVADKVAARLDLVALEYERGWIGRITQ 661

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  + + RI RGV+E   L+G  + S  ++     +  ++  Y +  +L     +  I G
Sbjct: 662 DKGVRLARILRGVEEVRTLDGPMLRSGEARRTGTLTESLQAVYGSPATLERKDRRQLIHG 721

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I   G KG+S+QRYKGLGEMN  QLWETTL+P+ R+LL+V I D ++ADDLF+
Sbjct: 722 PLELLKAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPNARTLLQVTIDDMTEADDLFT 781

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRR+FIQ+N+L    LD
Sbjct: 782 KLMGDVVEPRRDFIQQNALSVENLD 806


>gi|90581121|ref|ZP_01236920.1| DNA gyrase subunit B [Vibrio angustum S14]
 gi|90437642|gb|EAS62834.1| DNA gyrase subunit B [Vibrio angustum S14]
          Length = 805

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/806 (50%), Positives = 550/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ DGS +VSD+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+  SYKV GGLHGVGVS
Sbjct: 62  TIHEDGSVSVSDDGRGIPTEMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVPGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  ++L I+R G+IY+  + +G+ D PL V G     TGT + F PS D F+  +
Sbjct: 122 VVNALSEKVELTIQRAGHIYQQVYRHGVPDAPLAVIGDTE-KTGTRIRFWPSEDTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I+L D+R  E +E    Y+GGI AFV +L+R+K P+   
Sbjct: 181 FHYDILAKRLRELSFLNSGVSINLSDER-EEGKEDHFMYEGGIRAFVEHLNRNKTPIHPK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  RD+ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + S+++
Sbjct: 240 VFHFDSERDDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNSFMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L+
Sbjct: 300 KEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 EFLLENPSDAKTVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAVS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E +  Y    +L        D    ++   L + +       KLI+   
Sbjct: 540 KGKQEQYIKDDEDMNQYQTTLALDNASLFANDGAPAMTGTALESLVTQYNAGIKLIERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             +    + + V     + E   E     +  + L   LN           E       N
Sbjct: 600 RRYPSLMLNEFVYQPRLSTEMMAEEAQVEAWLTPLIAALNAKQSGESQYSFEVIRDEENN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                V     GV  +++L    + S         S  +         +     K  ++ 
Sbjct: 660 VYLPKVVVRTHGVDHEYLLSFDLLNSKEYAKIADLSEALNGLLDDTAFVQRGERKQAVSS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT++P++R +++V I DA  AD+LF+
Sbjct: 720 FKGALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAVAADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+EN+L    LD+
Sbjct: 780 CLMGDQVEPRRNFIEENALKVANLDV 805


>gi|86147178|ref|ZP_01065494.1| DNA gyrase subunit B [Vibrio sp. MED222]
 gi|218708101|ref|YP_002415722.1| DNA gyrase subunit B [Vibrio splendidus LGP32]
 gi|85835062|gb|EAQ53204.1| DNA gyrase subunit B [Vibrio sp. MED222]
 gi|218321120|emb|CAV17070.1| DNA gyrase subunit B [Vibrio splendidus LGP32]
          Length = 805

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/812 (51%), Positives = 552/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSDN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +VSD+GRGIPT+LH EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CNDIIVTIHEDSSVSVSDDGRGIPTELHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS +
Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTGTEIRFWPSEE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI+AFV +L+ +K
Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGIQAFVEHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+G R+ALTR 
Sbjct: 234 TPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVEST 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y ++ +L              +   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVSLALDNAELHVNPEAPAFAGEGLEKLVQQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS-----EKS 652
           L+      + +  + + +       E   D  +  +   +L  +LN     +     E  
Sbjct: 594 LVDRMSRRYPRALVHELIYVPRLTAEQCHDDAVVEAWGKQLVEQLNGKEAGASQYSLEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  S   +     GV  + VL    I S         S  ++        +     
Sbjct: 654 KHEELGLSVPKIVVRTHGVTHEHVLSIDLINSKEFGKLADLSEALDGLIEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
             +++     L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQEVSSFVEALNWLVKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADLLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|294638324|ref|ZP_06716577.1| DNA gyrase, B subunit [Edwardsiella tarda ATCC 23685]
 gi|291088577|gb|EFE21138.1| DNA gyrase, B subunit [Edwardsiella tarda ATCC 23685]
          Length = 804

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/805 (50%), Positives = 547/805 (67%), Gaps = 12/805 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G+++E  + +G+   PL + G     TGT V F PS   FS   
Sbjct: 122 VVNALSEKLELVIRRDGHVHEQIYHHGVPAAPLKMVGDTE-QTGTRVRFWPSMQTFSNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLRDKRND--REDHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E
Sbjct: 239 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYME 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
               +KK+K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+
Sbjct: 299 SEGYTKKNKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         +   ++   L   + +  ++ KLI    
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGAALHTNAAAPALAGEPLEKLVAEHYQVQKLIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS-----WHGSIN 658
             + K  + Q +     +     DQ         L   LN   +           +    
Sbjct: 599 RRYPKAVLNQLIYQPTLSEADLSDQAAVEQWIGTLVTTLNEKEQHGSVYSVQIVENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  V+    GV   ++ +   +     +      +++         +     +  +  
Sbjct: 659 MFEPAVRVRTHGVDTDYLFDFDFVHGAEYRRICTLGDKLRGLVEESAFVERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P+ R +LRV I DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPEGRRMLRVTIKDAVAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALD 802
            LMGD VEPRR FI+EN+L  + LD
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANLD 803


>gi|51598224|ref|YP_072415.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|108810130|ref|YP_654046.1| DNA gyrase subunit B [Yersinia pestis Antiqua]
 gi|108814112|ref|YP_649879.1| DNA gyrase subunit B [Yersinia pestis Nepal516]
 gi|145597328|ref|YP_001161403.1| DNA gyrase subunit B [Yersinia pestis Pestoides F]
 gi|150260971|ref|ZP_01917699.1| DNA gyrase subunit B [Yersinia pestis CA88-4125]
 gi|153947743|ref|YP_001403092.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 31758]
 gi|162420836|ref|YP_001608445.1| DNA gyrase subunit B [Yersinia pestis Angola]
 gi|165926159|ref|ZP_02221991.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936896|ref|ZP_02225462.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009503|ref|ZP_02230401.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213310|ref|ZP_02239345.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401541|ref|ZP_02307035.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422871|ref|ZP_02314624.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425446|ref|ZP_02317199.1| DNA gyrase, B subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170022266|ref|YP_001718771.1| DNA gyrase subunit B [Yersinia pseudotuberculosis YPIII]
 gi|186893348|ref|YP_001870460.1| DNA gyrase subunit B [Yersinia pseudotuberculosis PB1/+]
 gi|218931071|ref|YP_002348946.1| DNA gyrase subunit B [Yersinia pestis CO92]
 gi|229839801|ref|ZP_04459960.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841886|ref|ZP_04462042.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229896763|ref|ZP_04511926.1| DNA gyrase subunit B [Yersinia pestis Pestoides A]
 gi|229904651|ref|ZP_04519762.1| DNA gyrase subunit B [Yersinia pestis Nepal516]
 gi|270488362|ref|ZP_06205436.1| DNA gyrase, B subunit [Yersinia pestis KIM D27]
 gi|294505622|ref|YP_003569684.1| DNA gyrase subunit B [Yersinia pestis Z176003]
 gi|51591506|emb|CAH23178.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|108777760|gb|ABG20279.1| DNA gyrase subunit B [Yersinia pestis Nepal516]
 gi|108782043|gb|ABG16101.1| DNA gyrase subunit B [Yersinia pestis Antiqua]
 gi|115349682|emb|CAL22663.1| DNA gyrase subunit B [Yersinia pestis CO92]
 gi|145209024|gb|ABP38431.1| DNA gyrase subunit B [Yersinia pestis Pestoides F]
 gi|149290379|gb|EDM40456.1| DNA gyrase subunit B [Yersinia pestis CA88-4125]
 gi|152959238|gb|ABS46699.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis IP 31758]
 gi|162353651|gb|ABX87599.1| DNA gyrase, B subunit [Yersinia pestis Angola]
 gi|165915138|gb|EDR33749.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922019|gb|EDR39196.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991425|gb|EDR43726.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205608|gb|EDR50088.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958263|gb|EDR55284.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048923|gb|EDR60331.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055460|gb|EDR65253.1| DNA gyrase, B subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169748800|gb|ACA66318.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis YPIII]
 gi|186696374|gb|ACC87003.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis PB1/+]
 gi|229678769|gb|EEO74874.1| DNA gyrase subunit B [Yersinia pestis Nepal516]
 gi|229691225|gb|EEO83278.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696167|gb|EEO86214.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700201|gb|EEO88237.1| DNA gyrase subunit B [Yersinia pestis Pestoides A]
 gi|262363786|gb|ACY60507.1| DNA gyrase subunit B [Yersinia pestis D106004]
 gi|262367723|gb|ACY64280.1| DNA gyrase subunit B [Yersinia pestis D182038]
 gi|270336866|gb|EFA47643.1| DNA gyrase, B subunit [Yersinia pestis KIM D27]
 gi|294356081|gb|ADE66422.1| DNA gyrase subunit B [Yersinia pestis Z176003]
 gi|320017424|gb|ADW00996.1| DNA gyrase subunit B [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 804

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/806 (49%), Positives = 547/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEILV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++  G+   PL V G     TGT V F PS   F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGETE-QTGTTVRFWPSFQTFTNNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y +  +L             ++   L   + +   + K I    
Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHTNAHAPALAGEPLEKLVAEHYSVQKTIARME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFI-----AEKSEKSWHGSIN 658
             + +  +   +       E   ++E+       L   LN       +  S    +    
Sbjct: 599 RRYPRALLNNLIYQPTLQEEDLGNKEVVTQWIDSLVVLLNEKEHHGSSYSSVVRENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +   +  +++         +     ++ ++ 
Sbjct: 659 LFEPILRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEDGAFVERGERRVPVSS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEEALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVMVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804


>gi|301169283|emb|CBW28880.1| DNA gyrase, subunit B [Haemophilus influenzae 10810]
          Length = 806

 Score =  947 bits (2447), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E  +E     +       +L     ++ +      +
Sbjct: 597 IGRLSRHYPAPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|300719138|ref|YP_003743941.1| DNA gyrase subunit B [Erwinia billingiae Eb661]
 gi|299064974|emb|CAX62094.1| DNA gyrase subunit B [Erwinia billingiae Eb661]
          Length = 802

 Score =  947 bits (2447), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/804 (49%), Positives = 543/804 (67%), Gaps = 10/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDILV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG ++   +++G+   PL VTG   + TGT V F PS   F+   
Sbjct: 122 VVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET-DLTGTRVRFWPSHQTFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           DF Y+ L  RLRELSFLNS V I L  +   + R+    Y+GGI+AFV YL+++K P+  
Sbjct: 181 DFEYEILAKRLRELSFLNSGVSIKL--EDKRDARQDHYHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + +Y++
Sbjct: 239 NVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP   
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALC 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+++++ Y I  +L             +    L   + +     K+IK   
Sbjct: 539 KGKQEQYIKDDDAMDQYQIAIALDGATLHTNAEAPALGGAPLETLVSEFNSTRKMIKRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-----KSWHGSINNS 660
             +    +   +     +  S+Q    S    L   LN   +           +   +  
Sbjct: 599 RRYPVALLNSLIYHSTLSDLSEQATVQSWIDGLIVMLNEKEQHGSSYSGLVRENLEQHIF 658

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +V+    GV   + L+   +     +       ++         +     +  I    
Sbjct: 659 EPIVRIRTHGVDTDYPLDNEFVSGGEYRKICALGEKLRGLIEEDAFIERGERRQPIESFE 718

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             +D +    R+G+++QRYKGLGEMN  QLWETT++PD+R +LRV + DA  AD LF+ L
Sbjct: 719 QAMDWLVKESRRGLTVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTVKDAIAADQLFTTL 778

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 779 MGDAVEPRRAFIEENALRAANIDI 802


>gi|119383170|ref|YP_914226.1| DNA gyrase subunit B [Paracoccus denitrificans PD1222]
 gi|119372937|gb|ABL68530.1| DNA gyrase subunit B [Paracoccus denitrificans PD1222]
          Length = 812

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/813 (55%), Positives = 584/813 (71%), Gaps = 11/813 (1%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++   Q S Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+ EV+DN IDE+L G
Sbjct: 1   MTEPAPQTSDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVTEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V ++ DGS +V DNGRGIP D+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HADFVRVKIHADGSVSVRDNGRGIPVDMHPTEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPS 178
           LHGVGVSVVNALS WL+LRI R G  +   F NG     L V G A   + GTEV FL S
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRGGKEHYARFENGDTVEHLRVVGDAEPGEKGTEVRFLAS 180

Query: 179 SD------IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           S        F  ++++Y  L++RLREL+FLNS V+I L D+R  EP    ++Y+GG+  F
Sbjct: 181 SKEDRPDGTFLNREYSYKVLENRLRELAFLNSGVRIILEDERPAEPLRTELYYEGGVREF 240

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V ++DR K P+M  PI I G R+ I I++AM WND YHE VL FTNNIPQ+DGGTHL+G 
Sbjct: 241 VKFIDRSKTPVMPEPIFITGERNGIGIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGF 300

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR I +Y + S  ++K+K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 301 RGALTRVINNYAQSSGAARKEKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 360

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R  VE  + + L+ W EE+P EAK I+ K+++A++ R+AAR+AR+LTRRK  +D+ASLPG
Sbjct: 361 RPAVEGLIGEKLAEWFEENPAEAKSILGKIIEAALAREAARKARELTRRKTAMDVASLPG 420

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SELF+VEGDSAGGSAKQGRSR+NQA+LPLRGKILNVERARFD+MLSS 
Sbjct: 421 KLADCQEKDPALSELFIVEGDSAGGSAKQGRSRQNQAVLPLRGKILNVERARFDRMLSSD 480

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           +IGTLITALGTGIG+D F+++KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI  G
Sbjct: 481 QIGTLITALGTGIGRDEFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEAG 540

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            LYI +PPLY ++RG+S  Y+KDE +LEDYLI Q +         +   ++  DL   ++
Sbjct: 541 HLYIAQPPLYKVSRGRSEVYLKDEAALEDYLIEQGVDGASL-RLGNGETLTGADLARVVE 599

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           +A  + ++++ +  ++     EQA I+G             +A+ +A RL+ IAE+ E+ 
Sbjct: 600 EARVVRRILRAYPTHYPPHITEQAAIAGALVQGRVDADAQGVANAVAQRLDMIAEEYERG 659

Query: 653 WHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           W G    ++ I + R+ RGV+E   L+G  + S  S+     ++ + + Y     LI   
Sbjct: 660 WTGRPTQDAGIRLTRLLRGVEESRTLDGPMLRSAESRRLGAMTDALRDVYGQTAQLIRKD 719

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
             I I GP SLL  IF  G KG+S+QRYKGLGEMN  QLWETTL+P  R++L+V++ D  
Sbjct: 720 RGIPIHGPMSLLQAIFLEGEKGLSLQRYKGLGEMNPEQLWETTLDPAARTMLQVRVEDLG 779

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +ADD+F++LMGD VEPRR+FIQ+N+L    LDI
Sbjct: 780 EADDIFTKLMGDVVEPRRDFIQQNALSVENLDI 812


>gi|2160009|dbj|BAA20341.1| DNA gyrase subunit B [Escherichia coli]
          Length = 804

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 547/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQG +R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGGNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P+   +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPERCRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|148827759|ref|YP_001292512.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
 gi|148719001|gb|ABR00129.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
          Length = 806

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E  +E     +       +L     ++ +      +
Sbjct: 597 IGRLSRHYPVPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|157368284|ref|YP_001476273.1| DNA gyrase subunit B [Serratia proteamaculans 568]
 gi|157320048|gb|ABV39145.1| DNA gyrase, B subunit [Serratia proteamaculans 568]
          Length = 804

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/806 (49%), Positives = 548/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++  G    PL V G   + TGT V F PS + F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFWPSYETFTNNV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 DYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ ++         S   ++   L   + +   + KLI    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIAMDGATLHTNASAPALAGEPLEKLVAEHYSVQKLIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + +  +   +           DQ    +    L   LN   +      S    +    
Sbjct: 599 RRYPRALLNNLIYQPTLAEGDLSDQAKVKTWIDSLVKLLNDKEQHGSSYDSVIFENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +   +   ++         +     +  +  
Sbjct: 659 MFEPVLRIRTHGVDTDYALDFDFIHGGEYRKICVLGEKLRGLIEEDAFIERGERRQPVES 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|260581013|ref|ZP_05848836.1| DNA gyrase, B subunit [Haemophilus influenzae RdAW]
 gi|260092372|gb|EEW76312.1| DNA gyrase, B subunit [Haemophilus influenzae RdAW]
          Length = 806

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISTNAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E  +E     +       +L     ++ +      +
Sbjct: 597 IGRLNRHYPAPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|115499633|dbj|BAF33490.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 804

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/811 (49%), Positives = 547/811 (67%), Gaps = 15/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSDN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +VSD+GRGIPTDLH+EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIVVTIHEDSSVSVSDDGRGIPTDLHEEEQVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + TGT + F PS++
Sbjct: 116 HGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV +L+R+K
Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFRYEGGIKAFVGHLNRNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G R ALTR 
Sbjct: 234 TPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFRGALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y +  +L             ++   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDGASLHVNPQAPRLAGEALETLVKQYNVAIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA----EKSEKSW 653
           L++     +    I + +       +   D  +  +   +L  +LN          E   
Sbjct: 594 LVERMSRRYPYALIHEFIYMPRIIVDQCADSAVVEAWGKQLVEQLNAKEVGATYSIETEH 653

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +  +      +     GV  Q +L    + S         S  +         +      
Sbjct: 654 NADLGIYQPKIVVRTHGVTHQHLLSADLLNSKEYSKLADLSEALYGLVEEGAYIQRGERI 713

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      L+ +    R+G+S+QRYKGLGEMN  QLWETT++P++R +L+V I DA  A
Sbjct: 714 QPVDNFVDALNWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPESRRMLQVTIEDAVGA 773

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D+LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 DELFTTLMGDQVEPRRAFIEENALKVANLDV 804


>gi|238797842|ref|ZP_04641334.1| DNA gyrase subunit B [Yersinia mollaretii ATCC 43969]
 gi|238718258|gb|EEQ10082.1| DNA gyrase subunit B [Yersinia mollaretii ATCC 43969]
          Length = 804

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/806 (49%), Positives = 550/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT LH+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGLHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F PS + F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVRFWPSFETFTNNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV YL ++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIKAFVEYLSKNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 KVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E+Y ++ +L             ++   L   + +   + K I    
Sbjct: 539 KGKQEQYIKDDDAMEEYQMSLALDGAALHINAHAPALAGEPLEKLVAEHYSVQKTIARME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658
             + +  +   +       E   ++E+       L   LN   +           +    
Sbjct: 599 RRYPRALLNNLIYQPTLLEEDLSNKEVVTQWIDSLVVLLNEKEQHGSSYSSVVRENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +   +  +++         +     ++ ++ 
Sbjct: 659 LFEPILRIRTHGVDTDYELDFDFIHGGEYRKICLLGDKLRGLIEEDAFVERGERRVPVSS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD LF+
Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804


>gi|239993753|ref|ZP_04714277.1| DNA gyrase subunit B [Alteromonas macleodii ATCC 27126]
          Length = 806

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/812 (50%), Positives = 555/812 (68%), Gaps = 15/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MS---AENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              ITV ++ DGS +VSD+GRGIPT+LH EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CSEITVLIHSDGSVSVSDDGRGIPTELHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS LKLRI+R G  +E  + +G+   PL VTG   + TGT + F PSSD
Sbjct: 118 HGVGVSVVNALSSRLKLRIRRGGKAHEQEYHHGVPQAPLAVTGDT-DKTGTMIRFWPSSD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   ++YD L  RLRELSFLNS V I L D+R  +       Y+GGI+AFV YL+  K
Sbjct: 177 TFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERDGKE--DHFMYEGGIKAFVEYLNEKK 234

Query: 241 KPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ Q          D I++++AM+WND + ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 235 TPVHQKVFHFSSEQEDGIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFRGALTRT 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+EK   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVR  VES 
Sbjct: 295 LNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRPAVESA 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ L+ +L E+P E+KII  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 355 MNEKLAEFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D +D  KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI +P
Sbjct: 475 ALGCGIGRDEYDPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+++L +YL + ++        D    IS   L N +     ++K
Sbjct: 535 PLYKVKKGKQEQYLKDDDALTNYLTSIAIDGASLHTSDEDPGISGVGLENLVKQYQSVEK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES------DQEINVSLASKLANRLNFIAE-KSEKS 652
           +I         + + + + +   N E        + +      +L  R N  A  + E  
Sbjct: 595 MIARMKRLMPASILYRMLYTPTLNLEDLKDESALEHVAKHFVEQLTERENDGATYRYEIR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
               ++   I +     G+  +++++   I S   +  +  +  I +       +     
Sbjct: 655 TDAELSEYYITIIMRMHGIDYEYIIDHEFIESSEYQRLKELNLAINDMMGKDAYIQRGER 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  +      L+ + +  ++G  +QRYKGLGEMN  QLWETT++P++R +L+V I DA  
Sbjct: 715 RQPVESFKEALEWLMNEAKRGQYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIG 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            D LF+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 775 CDQLFTTLMGDQVEPRREFIEANALKVENLDV 806


>gi|327395906|dbj|BAK13328.1| DNA gyrase subunit B GyrB [Pantoea ananatis AJ13355]
          Length = 802

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/804 (50%), Positives = 548/804 (68%), Gaps = 10/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG +++  +++G+ + PL VTG   + TGT + F PS D F+   
Sbjct: 122 VVNALSQKLELTIRREGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           DF YD L  RLRELSFLNS V I L  +   + R     Y+GGI AFV YL+++K P+  
Sbjct: 181 DFEYDILAKRLRELSFLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 TVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E++  Y I  +L         S   +    L   + +     K+IK   
Sbjct: 539 KGKQEQYIKDDEAMLQYQIAIALDGTSLHTTVSAPALGGEPLETLVAEFNSTQKMIKRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSINNS 660
             +    +   +     +  S++    S  + L + L            +   +   N  
Sbjct: 599 RRYPMAMLRALIYHDTLSDISNEAQVTSWINGLVSYLTAREAHGSTYLAQVRENREQNVF 658

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +++    GV   + L+   +     +       ++         +     +  ++   
Sbjct: 659 EPVLRVRTHGVDTDYPLDAEFLQGGEYRKICALGGKLRGLLEEDAYIERGERRQPVSSFE 718

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             +D +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD LF+ L
Sbjct: 719 QAIDWLEKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAIAADQLFTTL 778

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 779 MGDAVEPRRAFIEENALKAANIDI 802


>gi|308188762|ref|YP_003932893.1| DNA gyrase subunit B [Pantoea vagans C9-1]
 gi|308059272|gb|ADO11444.1| DNA gyrase subunit B [Pantoea vagans C9-1]
          Length = 802

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/804 (50%), Positives = 550/804 (68%), Gaps = 10/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L+L I+REG +++  +++G+ + PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELTIRREGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVR 180

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 DFEYEILAKRLRELSFLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 TVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         S   +    L   + D     K+IK   
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNASAPALGGEPLETLVSDFNSTQKMIKRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSINNS 660
             +    +   +     +  S++    +  + L + L            +   +  +N  
Sbjct: 599 RRYPMAMLRAMIYHDTLSDLSNEAEVTTWLNGLVSYLTEREAHGSTYLAQVRENRELNLF 658

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +++    GV   + LE   +     +       ++         +     +  +    
Sbjct: 659 EPVLRVRTHGVDTDYPLEAEFVQGPEYRKICALGGKLRGLLEEDAYIERGERRQPVASFE 718

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             ++ +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD LF+ L
Sbjct: 719 QAIEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIGADQLFTTL 778

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 779 MGDAVEPRRAFIEENALKAANIDI 802


>gi|123444339|ref|YP_001008304.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122091300|emb|CAL14186.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 804

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/806 (49%), Positives = 544/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F PS   F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y +  +L             +    L   + +   + K I    
Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHINADAPPLVGEHLEKLVAEHYSVQKTIARME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658
             + +  +   +       E   D+E        L   LN   +           +    
Sbjct: 599 RRYPRALLNNLIYQPTLQEEDLSDKEAVTQWIDSLVVMLNEKEQHGSSYSSVVRENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +   +  +++         +     ++ ++ 
Sbjct: 659 LFEPVLRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEEGAFVERGERRVPVSS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD LF+
Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804


>gi|256821232|ref|YP_003145195.1| DNA gyrase subunit B [Kangiella koreensis DSM 16069]
 gi|256794771|gb|ACV25427.1| DNA gyrase, B subunit [Kangiella koreensis DSM 16069]
          Length = 808

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/814 (50%), Positives = 549/814 (67%), Gaps = 17/814 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N   +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V DNGRGIPT++H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CTDIYVTIHSDNSVSVRDNGRGIPTEMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+R G  YE  +++G+   PL V G A   TGTE+ F PS  
Sbjct: 118 HGVGVSVVNALSEELKLTIRRAGKRYEQIYVHGVPQAPLEVVGDAE-TTGTEIRFKPSDK 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +++YD L  RLRELSFLNS V I L D+RS +       Y+GGI+AFV YL+  K
Sbjct: 177 TFTNTEYHYDILAKRLRELSFLNSGVGIRLADERSGKQ--DHFMYEGGIKAFVEYLNSKK 234

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            P+ +        R+   +++++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R+ALTR
Sbjct: 235 TPIHEKVFHFTHEREEDGVTVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRAALTR 294

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +++E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 295 GLNNFMENEGYNKKGKVNTTGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQ 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L  +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC 
Sbjct: 355 AMGEHLKDFLLENPGEAKSVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLI
Sbjct: 415 EKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG GIG++ FD +K RYH+IIIMTDADVDGAHIRTLLLTFF+RQ+P LI  G++YI +
Sbjct: 475 TALGCGIGREEFDADKTRYHRIIIMTDADVDGAHIRTLLLTFFYRQVPQLIERGYIYIAQ 534

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + +GK  QY+KD+++LE+YL   +L+            IS   L   +++   + 
Sbjct: 535 PPLYKVKKGKQEQYLKDDDALENYLTQTALNNTELYISKDAPAISGEGLERLVNEYRDVQ 594

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHG- 655
             I+     +    +   +       +    +         LA +LN   +     ++  
Sbjct: 595 TTIRRLAQLYPSNILNSMIYHPTLKTDDLKSEPKVKEWMDTLAVKLNKDQKSGAVRFNFN 654

Query: 656 -----SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
                 + +          GV+ +++L      S   K   +   ++E        +   
Sbjct: 655 VRKDNELEHYLPHFVMFHHGVESEYLLSTEFFASGDYKKISLLGEKLETLIEEGAFVKRG 714

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
               +I      LD + S  R+G ++QRYKGLGEMN  QLWETT++P  R +L+V I DA
Sbjct: 715 EKIQEIESFKEALDWLMSEARRGQAIQRYKGLGEMNPGQLWETTMDPAGRRMLQVTIEDA 774

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             AD LF+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 775 VAADQLFTTLMGDQVEPRREFIENNALSVSNLDV 808


>gi|145635346|ref|ZP_01791048.1| DNA gyrase subunit B [Haemophilus influenzae PittAA]
 gi|145267352|gb|EDK07354.1| DNA gyrase subunit B [Haemophilus influenzae PittAA]
          Length = 806

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/810 (49%), Positives = 544/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E  +E     +       +L     ++ +      +
Sbjct: 597 IGRLSRHYPAPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +     +++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRNFEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|145628949|ref|ZP_01784749.1| DNA gyrase subunit B [Haemophilus influenzae 22.1-21]
 gi|144979419|gb|EDJ89105.1| DNA gyrase subunit B [Haemophilus influenzae 22.1-21]
          Length = 806

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E    +    +       +L     ++ +      +
Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISVEMMKDESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|332163518|ref|YP_004300095.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318608022|emb|CBY29520.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325667748|gb|ADZ44392.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861742|emb|CBX71916.1| DNA gyrase subunit B [Yersinia enterocolitica W22703]
          Length = 804

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/806 (49%), Positives = 544/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F PS   F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 KVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y +  +L             +    L   + +   + K I    
Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHINAEAPPLVGEHLEKLVAEHYSVQKTIARME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658
             + +  +   +       E   D+E        L   LN   +           +    
Sbjct: 599 RRYPRALLNNLIYQPTLKEEDLSDKEAVTQWIDSLVVMLNEKEQHGSSYSSVVRENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +   +  +++         +     ++ ++ 
Sbjct: 659 LFEPVLRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEEGAFVERGERRVPVSS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD LF+
Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804


>gi|85057982|ref|YP_453684.1| DNA gyrase subunit B [Sodalis glossinidius str. 'morsitans']
 gi|84778502|dbj|BAE73279.1| DNA gyrase subunit B GyrB [Sodalis glossinidius str. 'morsitans']
          Length = 804

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/806 (50%), Positives = 547/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  KIHEDNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS-DIFSVQ 185
           VVNALS  L+L IKREG +++ ++  G+  +PL V G   + TGT V F PS     +  
Sbjct: 122 VVNALSEKLELMIKREGKVHQQTYHAGVPQSPLEVVGET-DQTGTTVRFWPSFVTFTNNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIRLRDKRNDKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGG HL+G R+A+TR + SY++
Sbjct: 239 NVFYFSTEKDGIGVEIALQWNDGFQENIYCFTNNIPQRDGGAHLAGFRAAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L 
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIELGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  ++             ++   L N + +   + K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQIALAMDGATLHANAHAPALAGEPLENLVAEHYAVQKMIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               +  +   +          S Q+   S  + L   LN   +       +   +    
Sbjct: 599 RRFPRVLLNHLIYQPALTEVQLSKQDQVTSWIASLVQALNDNEKHGSSYSYKVQENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + L++    GV   ++L+   I     +        + +       +     +  +T 
Sbjct: 659 LFEPLLRVRTHGVDTDYLLDYDFIHGGEYRKLATLGETLGDLIEADAYIERGERRQPVTS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++PD+R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|119773158|ref|YP_925898.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella amazonensis SB2B]
 gi|119765658|gb|ABL98228.1| DNA gyrase subunit B [Shewanella amazonensis SB2B]
          Length = 805

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/812 (49%), Positives = 546/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSENT----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              IT+T+++DGS +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 57  CSEITITIHVDGSVSVKDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G ++E  + +G+ D P+ V G A   TGTEV F PS +
Sbjct: 117 HGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKVVGDAT-KTGTEVRFWPSEE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F++D L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K
Sbjct: 176 TFSDTLFHFDILAKRVRELSFLNSGVGIRLVDERDNKD--EFFKYEGGISAFVEYLNRNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 234 TPVNKDIFHFAQEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRN 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E    +KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  
Sbjct: 294 LNNYMEAEGYNKKNKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQT 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E
Sbjct: 354 MGEKLGDYLLENPGDAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D +D +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYDPDKTRYHYIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+ +L ++L   +L             +S   L   ++   +++ 
Sbjct: 534 PLYKVKKGKHEQYLKDDPALTEFLTTGALDGASIHPSQGAPGMSGEPLEKLVNQYREVEG 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKS 652
           +I      + +   ++ +   V + +   DQ    +        L           +   
Sbjct: 594 IIARLDLRYPEVLTDRMLYHPVLSNDILADQAKVQAWCDAFVADLVERESSGVLYNAVAE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                      V     G+  +++       S   +     +N ++        +     
Sbjct: 654 HDPERQVYVPKVTLRRHGIDHEYLFSYDFFQSSDYRKMGALANALDGLIEEGGYVQRGEK 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              +T     LD +    ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  
Sbjct: 714 VKPVTSFIEALDWLVGESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIA 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 774 ADQLFTCLMGDQVEPRRDFIEANALNVANLDV 805


>gi|229846657|ref|ZP_04466765.1| DNA gyrase subunit B [Haemophilus influenzae 7P49H1]
 gi|229810750|gb|EEP46468.1| DNA gyrase subunit B [Haemophilus influenzae 7P49H1]
          Length = 806

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/810 (49%), Positives = 544/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G    PL V G+    TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTVIGNTE-TTGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLN  V I LIDKR  +  E    Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNFGVSIRLIDKR--DGAEDHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKGVLDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGVLDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E    +    +       +L     ++ +      +
Sbjct: 597 IGRLSRHYPAPVLKGLIYQSPISVEMMKDESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|270158399|ref|ZP_06187056.1| DNA gyrase B subunit [Legionella longbeachae D-4968]
 gi|289163357|ref|YP_003453495.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           longbeachae NSW150]
 gi|269990424|gb|EEZ96678.1| DNA gyrase B subunit [Legionella longbeachae D-4968]
 gi|288856530|emb|CBJ10325.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           longbeachae NSW150]
          Length = 805

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/811 (50%), Positives = 549/811 (67%), Gaps = 14/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    ++SYD+++I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MS---VDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CKEIFVTIHSDESITVKDDGRGIPVDIHKEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E  + NG+ D P+  TG A   TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSEELHLTVRRHGKIHEQRYRNGVPDAPMAETGDAT-TTGTQIWFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELS+LNS V I L D+RS   R+ T  Y+GGI+AFV +L+++K
Sbjct: 177 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERS--QRQDTFHYEGGIKAFVEHLNKNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +M     +   ++NI ++L+M+WND Y E + CFTNNIPQ+DGGTH++G R+ALTR +
Sbjct: 235 NVIMPIVFSMTAEKENIVVELSMQWNDSYQETLYCFTNNIPQRDGGTHMAGFRAALTRTL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K S  GDD REG T++LS+K+PDP+FSSQTK+KLVSSEV+SVVES V
Sbjct: 295 NNYIESEGYAKKAKVSPTGDDAREGLTAILSVKVPDPKFSSQTKDKLVSSEVKSVVESSV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +  + +L E+P  AK IV K++DA+  R+AARRAR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 AEKFNDFLLENPSSAKAIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG D +D +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ P LI  G++YI +PP
Sbjct: 475 LGCGIGPDEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK  QYVKD+E+L +YL   +L             I+   L   +    + +K+
Sbjct: 535 LYKVKRGKQEQYVKDDEALFEYLTQSALDGAAFFPTKDAPSIASKALEELVLQFRRAEKI 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWH---- 654
           IK +   +    +++     + + E    +E   +   +L + L  +  K+E+       
Sbjct: 595 IKRYKRRYPTDILKRIAYLPILHIEDLDQEEKVANWCKQLHSSLQQVGSKTEQYDVDVHM 654

Query: 655 -GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     +     G +    +      S   K       ++         +     +
Sbjct: 655 LPDTNQFLPRIIVTQHGAKNPIPINAEFFNSKDYKELVSLGAKLASLIEEGAYIKRGDKE 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + +      LD +    ++G ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 LAVESFEQALDWLMEEAKRGQTIQRYKGLGEMNPEQLWETTMDPTVRRMLQVNIEDAVAA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D +F+ LMGD VEPRREFI+ N+L +  +D+
Sbjct: 775 DAIFTTLMGDNVEPRREFIEFNALEAENIDV 805


>gi|148825154|ref|YP_001289907.1| DNA gyrase subunit B [Haemophilus influenzae PittEE]
 gi|89892398|gb|ABD78983.1| HI0567-like protein [Haemophilus influenzae]
 gi|148715314|gb|ABQ97524.1| DNA gyrase subunit B [Haemophilus influenzae PittEE]
          Length = 806

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/810 (49%), Positives = 545/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G    PL V G+    TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTVIGNTE-TTGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR  +  E    Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKR--DGAEDHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKGVLDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGVLDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E    +    +       +L     ++ +      +
Sbjct: 597 IGRLSRHYPAPVLKGLIYQSPISVEMMKDESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRTFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|238783051|ref|ZP_04627078.1| DNA gyrase subunit B [Yersinia bercovieri ATCC 43970]
 gi|238716052|gb|EEQ08037.1| DNA gyrase subunit B [Yersinia bercovieri ATCC 43970]
          Length = 804

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/806 (49%), Positives = 548/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT LH+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGLHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F PS + F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVRFWPSFETFTNNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV YL ++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIKAFVEYLSKNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 KVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y ++ +L             ++   L   + +   + K I    
Sbjct: 539 KGKQEQYIKDDDAMEQYQMSLALDGAALHINAHAPALAGEPLEKLVAEHYSVQKTIARME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658
               +  +   +       E   ++E+       L   LN   +           +    
Sbjct: 599 RRFPRALLNNLIYQPTLLEEDLSNKEVVTQWIDSLVVLLNEKEQHGSSYSSVVRENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +   +  +++         +     ++ ++ 
Sbjct: 659 LFEPILRIRTHGVDTDYELDFDFIHGGEYRKICLLGDKLRGLIEEDAFVERGERRVPVSS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD LF+
Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804


>gi|84394122|ref|ZP_00992856.1| DNA gyrase subunit B [Vibrio splendidus 12B01]
 gi|84375268|gb|EAP92181.1| DNA gyrase subunit B [Vibrio splendidus 12B01]
          Length = 805

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/812 (51%), Positives = 549/812 (67%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSDN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +VSD+GRGIPT+LH EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CNDIIVTIHEDSSVSVSDDGRGIPTELHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS +
Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTGTEIRFWPSEE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI+AFV +L+ +K
Sbjct: 175 TFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGIQAFVEHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+G R ALTR 
Sbjct: 234 TPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRGALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVEST 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDE+++  Y ++ +L              +   L   +       K
Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVSLALDNAELHVNPEAPAFTGEGLEKLVHQYNAGIK 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS-----EKS 652
           L+      + +  I + +       E   D+    +   +L  +LN     +     E  
Sbjct: 594 LVDRMSRRYPRALIHELIYVPRLTAEQCHDEAAVEAWGKQLVEQLNGKEAGASQYSLEVE 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H  +  S   +     GV  + VL    I S         S  ++        +     
Sbjct: 654 KHEELGLSVPKIVVRTHGVTHEHVLSIDLINSKEFGKLADLSEALDGLIEEGAYIKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              ++     L+ +    R+G+S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  
Sbjct: 714 TQAVSSFVEALNWLVKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR FI+EN+L    LD+
Sbjct: 774 ADLLFTTLMGDQVEPRRNFIEENALKVANLDV 805


>gi|238750286|ref|ZP_04611788.1| DNA gyrase subunit B [Yersinia rohdei ATCC 43380]
 gi|238711519|gb|EEQ03735.1| DNA gyrase subunit B [Yersinia rohdei ATCC 43380]
          Length = 804

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/806 (49%), Positives = 546/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F PS   F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y +  +L        +    +S   L   + +   + K I    
Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHINEHAPALSGEPLERLVTEHYSVQKTIARME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658
             + +  +   +       E   ++E+       L   LN   +           +    
Sbjct: 599 RRYPRALLNNLIYQPTLQEEELSNKEVVTQWIESLVALLNEKEQHGSSYSAVVRENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +   +  +++         +     ++ +T 
Sbjct: 659 LFEPILRIRTHGVDTDYELDFDFIHGGEYRKICLLGDKLRGLIEEGAFVERGERRVPVTS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P+ R +LRV + DA  AD LF+
Sbjct: 719 FEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVMVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804


>gi|253987487|ref|YP_003038843.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253778937|emb|CAQ82097.1| DNA gyrase subunit B [Photorhabdus asymbiotica]
          Length = 805

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/808 (49%), Positives = 552/808 (68%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ + +
Sbjct: 1   MMSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCNEV 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  IVTIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALS  L+L I+R+G ++E ++  G+  +PL + G     TGT V F PS D F +
Sbjct: 121 VSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGETE-QTGTRVRFWPSMDTFRN 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F +D L  RLRELSFLNS V I LIDKR+         Y+GGI+AFV +L+++K P+
Sbjct: 180 NTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGGIKAFVEFLNKNKTPI 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY
Sbjct: 238 HPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ 
Sbjct: 298 MDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP 
Sbjct: 358 LVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY 
Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KD+E++++Y ++ +L        D    +    L   + +   + K+IK 
Sbjct: 538 VKKGKQEQYIKDDEAMDEYQLSIALDGASLYTSDHTPALRGEPLEKLVTEFNGVKKIIKR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEK-----SEKSWHGS 656
               +  + +   +       E  +D+         L  RLN   +       +   +  
Sbjct: 598 MERLYPASLLNNLIYHPKLTEEALTDETKVQEWIETLVTRLNDREQNGSSYSYQLHENRE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
               + +++    GV   + L+   +         +  +++         +     +  +
Sbjct: 658 RQMFEPILRVRTHGVDTDYPLDFDFVHGGEYHRITLLGDKLSNLIEENAYIERGERRQPV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +     L+ +    R+G+S+QRYKGLGEMN  QLWETT+NP+TR ++RV + DA   D L
Sbjct: 718 SDFEQALEWLTKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAIATDQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803
           F+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 778 FTTLMGDAVEPRRAFIEENALKAANIDI 805


>gi|238754008|ref|ZP_04615367.1| DNA gyrase subunit B [Yersinia ruckeri ATCC 29473]
 gi|238707760|gb|EEQ00119.1| DNA gyrase subunit B [Yersinia ruckeri ATCC 29473]
          Length = 804

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/806 (49%), Positives = 548/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++  G+   PL + G   + TGT V F PS   F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKMVGET-DQTGTTVRFWPSFQTFTNNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y ++ +L             +S   L   + +   + K IK   
Sbjct: 539 KGKQEQYIKDDDAMEQYQMSLALDGAALHINPEAPALSGERLEALVAEHYSVQKTIKRME 598

Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + +  +   +       +   ++E+       L   LN   +      S    +    
Sbjct: 599 RRYPRALLNNLIYQPTLLEDDLGNKEVVQQWIDSLVTLLNEKEQHGSSYSSIVRENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +   +   ++         +     ++ +  
Sbjct: 659 MFEPILRIRTHGVDTDYDLDFDFIHGGEYRKICLLGEKLRGLIEEGAFVERGERRLAVDS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVMVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804


>gi|46143431|ref|ZP_00135256.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|165976237|ref|YP_001651830.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|190150147|ref|YP_001968672.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|303251321|ref|ZP_07337499.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|303252819|ref|ZP_07338978.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307245683|ref|ZP_07527769.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247805|ref|ZP_07529841.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307250051|ref|ZP_07532015.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|307252443|ref|ZP_07534339.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307254650|ref|ZP_07536479.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307256870|ref|ZP_07538648.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307259097|ref|ZP_07540827.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|307261303|ref|ZP_07542978.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|307263484|ref|ZP_07545099.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|165876338|gb|ABY69386.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|189915278|gb|ACE61530.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|302648249|gb|EFL78446.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|302649863|gb|EFL80041.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306853385|gb|EFM85604.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306855607|gb|EFM87774.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306857911|gb|EFM90003.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306860035|gb|EFM92052.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306862395|gb|EFM94360.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306864604|gb|EFM96509.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306866764|gb|EFM98622.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306869034|gb|EFN00836.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306871127|gb|EFN02856.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 810

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/813 (50%), Positives = 551/813 (67%), Gaps = 13/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q +SYD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +T++ D S +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 61  CKDIIITIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L+L I+REG+++E  +  G  D PL V G   + TGT V F PS D
Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTVIGDT-DKTGTMVRFWPSLD 179

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF +  +F Y  L  RLRELSFLNS V I LID+R  +       Y+GGI+A+V YL+  
Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIRLIDERDGKE--EHFKYEGGIKAYVEYLNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +  +P  +   +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 238 KTHIHNTPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297

Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y++ S   KK   ++   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR  VE
Sbjct: 298 LKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ LS +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 358 SSMNEALSEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI 
Sbjct: 478 ITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYVYIA 537

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  +Y++D + +  Y I+ +L        +    +S   L + I     +
Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVSEGAPALSGVALESLISQYNGV 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSE 650
            KL       +    + + + S   + E    Q    +   +   +L          +SE
Sbjct: 598 QKLFDRLSRRYPVALLNELIYSPALSAEFAKVQAKVTAWNEQFVAKLMEKETGGSFYRSE 657

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             ++      +  +     G+   + L+ + I S          N + +       ++  
Sbjct: 658 VFFNTERQVYEPEIVVTTHGMDTTYRLDFNFISSNEYAKITALGNELNDLLSPSAYVMRG 717

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             + +++     LD +    RKG+++QRYKGLGEMN  QLWETT++P  R +L+V ITDA
Sbjct: 718 ERRQEVSSFAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 777

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             AD LFS LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIESNALYAQLDI 810


>gi|319775512|ref|YP_004138000.1| DNA gyrase subunit B [Haemophilus influenzae F3047]
 gi|319897917|ref|YP_004136114.1| DNA gyrase, subunit b [Haemophilus influenzae F3031]
 gi|329122446|ref|ZP_08251033.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus
           aegyptius ATCC 11116]
 gi|317433423|emb|CBY81804.1| DNA gyrase, subunit B [Haemophilus influenzae F3031]
 gi|317450103|emb|CBY86317.1| DNA gyrase, subunit B [Haemophilus influenzae F3047]
 gi|327473728|gb|EGF19147.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus
           aegyptius ATCC 11116]
          Length = 806

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E    +    +       +L     ++ +      +
Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +     +++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|145638524|ref|ZP_01794133.1| DNA gyrase subunit B [Haemophilus influenzae PittII]
 gi|145272119|gb|EDK12027.1| DNA gyrase subunit B [Haemophilus influenzae PittII]
 gi|309750028|gb|ADO80012.1| DNA gyrase subunit B [Haemophilus influenzae R2866]
          Length = 806

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DYFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E    +    +       +L     ++ +      +
Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +     +++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|283480416|emb|CAY76332.1| DNA gyrase subunit B [Erwinia pyrifoliae DSM 12163]
          Length = 803

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/806 (50%), Positives = 548/806 (67%), Gaps = 10/806 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I
Sbjct: 1   MMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  LVTIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG +++  +++G+    L VTG   + TGT V F PS   F+ 
Sbjct: 121 VSVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTN 179

Query: 185 Q-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+
Sbjct: 180 VVEFEYEILAKRLRELSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPI 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y
Sbjct: 238 HPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ 
Sbjct: 298 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS +L EHP +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP 
Sbjct: 358 LSEYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG 
Sbjct: 418 LSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY 
Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KD+E+++ Y I  +L         S   +    L + + +     K+IK 
Sbjct: 538 VKKGKQEQYIKDDEAMDQYQIAIALDGATLHANASAPALGGKPLEDLVSEFNSTRKMIKR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658
               +    +   +     +  + +    +    L   LN   +           +  ++
Sbjct: 598 MERRYPVALLNALIYHATLSDVTAEAPVQNWLDGLVKYLNDNDQHGSSYSGVVRENRELH 657

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   +     +       ++         +     +  I  
Sbjct: 658 LFEPVLRVRTHGVDTDYPLDNEFVLGGEYRKICALGEQLRGLIEEDAYIERGERRQPIAS 717

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               +D +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD LF+
Sbjct: 718 FEQAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAVAADQLFT 777

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 778 TLMGDAVEPRRAFIEENALRAANIDI 803


>gi|332139414|ref|YP_004425152.1| DNA gyrase subunit B [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549436|gb|AEA96154.1| DNA gyrase subunit B [Alteromonas macleodii str. 'Deep ecotype']
          Length = 806

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/812 (50%), Positives = 551/812 (67%), Gaps = 15/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MS---AENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ DGS +VSD+GRGIPT+LH EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CSEIVVQIHSDGSVSVSDDGRGIPTELHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS LKLRI+R G  +E  + +G+   PL VTG   + TGT + F PSSD
Sbjct: 118 HGVGVSVVNALSSRLKLRIRRGGKAHEQEYQHGVPQAPLAVTGDT-DKTGTMIRFWPSSD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   ++YD L  RLRELSFLNS V I L D+R  +       Y+GGI+AFV YL++ K
Sbjct: 177 TFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERDGKE--DHFMYEGGIKAFVEYLNQKK 234

Query: 241 KPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + Q          D I++++AM+WND + ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 235 TAVHQKVFHFSSEQEDGIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFRGALTRT 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+EK   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVR  VES 
Sbjct: 295 LNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRPAVESA 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ L+ +L E+P E+KII  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 355 MNEKLAEFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D +D  KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI +P
Sbjct: 475 ALGCGIGRDEYDPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+++L +YL   ++        D    IS   L N +     ++K
Sbjct: 535 PLYKVKKGKQEQYLKDDDALTNYLTGIAIDGASLHTSDEDPGISGVGLENLVKQYQSVEK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES------DQEINVSLASKLANRLNFIAE-KSEKS 652
           +I           + + + +   N E        + +      +L  R N  A  + E  
Sbjct: 595 MIARMKRKMPSAILYRMLYTPTLNLEDLKDESALEHVAKHFVEQLTERENDGATYRYEIR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
               ++   I +     G+  +++++   I S   +  +  +  I +       +     
Sbjct: 655 TDAELSEYYITIIMRMHGIDYEYIIDHEFIESSEYQRLKELNLAINDMMSVDAYIKRGER 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +      LD + +  ++G  +QRYKGLGEMN  QLWETT++P+ R +L+V I DA  
Sbjct: 715 KQPVESFKEALDWLMNEAKRGQYIQRYKGLGEMNPEQLWETTMDPEGRRMLQVTIEDAIG 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            D LF+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 775 CDQLFTTLMGDQVEPRREFIEANALKVENLDV 806


>gi|317494670|ref|ZP_07953082.1| DNA gyrase, subunit B [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917272|gb|EFV38619.1| DNA gyrase, subunit B [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 804

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/805 (50%), Positives = 552/805 (68%), Gaps = 12/805 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT LH+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGLHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++ +G+   PL V G     TGT V F PS + F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYAHGVPQFPLKVVGDTE-TTGTTVRFWPSMETFSNHT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  + RE    Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLRDKR--DNREDHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E
Sbjct: 239 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYME 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L+E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLQENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+++++ Y ++ +L             +S   L   + +  ++ KLI    
Sbjct: 539 KGKQEQYIKDDDAMDQYQLSIALDGAELHINADAPAMSNEHLEKLVTEHYQVQKLIGRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSEKSWHGSIN 658
             + K  + Q +           DQ         L N LN          +  + +    
Sbjct: 599 RRYPKALLNQLIYHPTLVEADLSDQAKVQQWIESLVNTLNEKEVHGSTYSAIVTENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  ++    GV   + L+   I     +        + +       ++    +  IT 
Sbjct: 659 MFEPSLRIRTHGVDTDYPLDFDFIHGAEYRRICNLGGTLRDMIEDGAFVMRGERRQPITS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD LF+
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPQSRRMLRVTVKDAVAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALD 802
            LMGD VEPRR FI+EN+L  + LD
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANLD 803


>gi|145637927|ref|ZP_01793569.1| DNA gyrase subunit B [Haemophilus influenzae PittHH]
 gi|145268867|gb|EDK08828.1| DNA gyrase subunit B [Haemophilus influenzae PittHH]
          Length = 806

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSENH--FHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E    +    +       +L     ++ +      +
Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +     +++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|68249167|ref|YP_248279.1| DNA gyrase subunit B [Haemophilus influenzae 86-028NP]
 gi|229845696|ref|ZP_04465819.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
 gi|68057366|gb|AAX87619.1| DNA gyrase subunit B [Haemophilus influenzae 86-028NP]
 gi|229811382|gb|EEP47088.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
          Length = 806

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E  +E     +       +L     ++ +      +
Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +      
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVTRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|145633477|ref|ZP_01789206.1| DNA gyrase subunit B [Haemophilus influenzae 3655]
 gi|144985846|gb|EDJ92454.1| DNA gyrase subunit B [Haemophilus influenzae 3655]
          Length = 806

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DYFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E  +E     +       +L     ++ +      +
Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +      
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVTRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|309972282|gb|ADO95483.1| DNA gyrase subunit B [Haemophilus influenzae R2846]
          Length = 806

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGAASIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E    +    +       +L     ++ +      +
Sbjct: 597 IGRLNRHYPTPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|238765067|ref|ZP_04626002.1| DNA gyrase subunit B [Yersinia kristensenii ATCC 33638]
 gi|238696684|gb|EEP89466.1| DNA gyrase subunit B [Yersinia kristensenii ATCC 33638]
          Length = 804

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/806 (49%), Positives = 543/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F PS   F +  
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI AFV YL ++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAFVEYLSKNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+ 
Sbjct: 239 KVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMG 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y +  +L             +    L   + +   + K I    
Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHINADAPPLVGEHLEKLVAEHYSVQKTIARME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658
             + +  +   +       E   D+E+       L   LN   +           +    
Sbjct: 599 RRYPRALLNNLIYQPTLQEEDLTDKEVVTQWIDSLVVMLNEKEQHGSSYSSVVRENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   I     +   +  +++         +     ++ ++ 
Sbjct: 659 LFEPVLRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIDDGAFVERGERRVPVSS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD LF+
Sbjct: 719 FEEALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804


>gi|260582729|ref|ZP_05850516.1| DNA gyrase, B subunit [Haemophilus influenzae NT127]
 gi|260094179|gb|EEW78080.1| DNA gyrase, B subunit [Haemophilus influenzae NT127]
          Length = 806

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGAASIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E    +    +       +L     ++ +      +
Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|292490133|ref|YP_003533028.1| DNA gyrase subunit B [Erwinia amylovora CFBP1430]
 gi|292901137|ref|YP_003540506.1| DNA gyrase subunit B [Erwinia amylovora ATCC 49946]
 gi|291200985|emb|CBJ48124.1| DNA gyrase subunit B [Erwinia amylovora ATCC 49946]
 gi|291555575|emb|CBA24167.1| DNA gyrase subunit B [Erwinia amylovora CFBP1430]
 gi|312174326|emb|CBX82579.1| DNA gyrase subunit B [Erwinia amylovora ATCC BAA-2158]
          Length = 802

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/804 (50%), Positives = 547/804 (68%), Gaps = 10/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185
           VVNALS  L+L I+REG +++  +++G+    L VTG   + TGT V F PS   F+   
Sbjct: 122 VVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L EHP +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         S   +    L + + +     K+IK   
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANASAPALGGKPLEDLVSEFNSTRKMIKRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNS 660
             +    +   +     +  + Q    +    L   LN       +       +  ++  
Sbjct: 599 RRYPMALLNALIYHATLSDLTAQAPVNTWLDGLVTYLNENDQHGSSYNGVVRENRELHLF 658

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +++    GV   + L+   I     +       ++         +     +  I    
Sbjct: 659 EPVLRVRTHGVDTDYPLDNEFILGGEYRKICALGEQLRGLIEEDAYIERGERRQPIASFE 718

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             +D +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD LF+ L
Sbjct: 719 QAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAVAADQLFTTL 778

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 779 MGDAVEPRRAFIEENALRAANIDI 802


>gi|227113113|ref|ZP_03826769.1| DNA gyrase subunit B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 805

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/806 (50%), Positives = 547/806 (67%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I +
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L L I R+G ++E ++ +G+   PL VTG   N TGT V F PS + F+   
Sbjct: 122 VVNALSEKLTLVIHRDGKLHEQTYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I LID+R  + +     Y GGI+AFV YL+R+K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDER-EKDKADHYHYDGGIKAFVDYLNRNKTPIHP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 240 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L 
Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLV 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 360 DYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P ++  G +YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L             ++   L   + +   + K+I    
Sbjct: 540 KGKQEQYIKDDEAMDQYQIALALDGATLHTNAQAPALAGEPLEKLVSEHYAVQKMIGRME 599

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
               + F+ + +           ++E   + A  L + LN                   +
Sbjct: 600 RRFPRVFLNRLIYQPTLAEADLGEREKVQAWAESLVSSLNENEIHGSTYSFVIHHDEERS 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  ++    GV   + L    +     +       ++         +     +  +  
Sbjct: 660 VFEPALRVRTHGVDTDYPLGAGFVAGSEYRKLNQLGEKLRGLIEEDAYIERGERRQPVAS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD+LF+
Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAIAADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR FI+EN+L +  +DI
Sbjct: 780 TLMGDAVEPRRAFIEENALKAMNIDI 805


>gi|238898809|ref|YP_002924491.1| DNA gyrase, subunit B (type II topoisomerase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466569|gb|ACQ68343.1| DNA gyrase, subunit B (type II topoisomerase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 804

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ +I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDESL GY   ITV
Sbjct: 2   SNTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDESLAGYCKKITV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  IIHEDNSVSVEDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS-SDIFSVQ 185
           VVNALS  L+L I REG+I++ +++ G    PL V G     TGT V F PS     +  
Sbjct: 122 VVNALSEKLELTISREGSIHQQTYVMGEPQAPLKVMGKTE-LTGTRVRFWPSLKTFTNQT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV+YL+++K P+  
Sbjct: 181 EFQYDILAKRLRELSFLNSGVFICLEDKRNDQE--KHFHYEGGIQAFVTYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+E
Sbjct: 239 KVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAMTRTMNSYME 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGFSKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKTIVNKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+S+E+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASEEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDAD+DG+HIRTLLLTFF+RQMP LI  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADIDGSHIRTLLLTFFYRQMPELIERGHIFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y ++ +L             +S   L   +     + K +    
Sbjct: 539 KGKQEQYIKDDDAMEKYQMSLALEGVKFHTHPQAPALSGASLEKLVHQHYSVQKTLNRME 598

Query: 606 PNHDKTFIEQAVISGVFN--CESDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             + +  + Q +           D E   +  + L ++LN    +        + +    
Sbjct: 599 RRYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLLVDKLNEKETQGSHYIFVLNKNTENE 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             D ++K    GV   ++L+   I S   +    + +++ +       L     K  I  
Sbjct: 659 IYDPVLKIRTHGVDTDYLLDLHFIQSSEYQKICHWGDQLRDLLEPGAFLQRGEKKTCINS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P+TR +L+V+I DA  AD LF+
Sbjct: 719 FEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWETTMDPETRRMLQVRIKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRNFIEENALKAANIDI 804


>gi|15963765|ref|NP_384118.1| DNA gyrase subunit B [Sinorhizobium meliloti 1021]
 gi|307302568|ref|ZP_07582325.1| DNA gyrase, B subunit [Sinorhizobium meliloti BL225C]
 gi|307316101|ref|ZP_07595545.1| DNA gyrase, B subunit [Sinorhizobium meliloti AK83]
 gi|15072940|emb|CAC41399.1| Probable DNA gyrase subunit B [Sinorhizobium meliloti 1021]
 gi|306897941|gb|EFN28683.1| DNA gyrase, B subunit [Sinorhizobium meliloti AK83]
 gi|306903238|gb|EFN33828.1| DNA gyrase, B subunit [Sinorhizobium meliloti BL225C]
          Length = 811

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 525/812 (64%), Positives = 644/812 (79%), Gaps = 10/812 (1%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D  +        Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MTDISETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+ADI+TVTLN DGS TV+DNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHADIVTVTLNPDGSVTVTDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D PL VTG AG +TGTEVTF
Sbjct: 121 VSGGLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAGGETGTEVTF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS   FS  +F + TL+HRLREL+FLNS V+I L DKR  + R   M Y GG+EAFV+Y
Sbjct: 181 TPSEQTFSNIEFEFGTLEHRLRELAFLNSGVRIVLTDKRHSDIRREEMMYDGGLEAFVAY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+Q P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 241 LDRAKKPLVQKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP +AKI+V KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 361 VESLVNEALSVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSERDP KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG
Sbjct: 421 DCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGT IG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LY
Sbjct: 481 TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY + RGKS+QY+KDE++LEDYLI+  L E       S  V    DLR  I+DAL
Sbjct: 541 IAQPPLYKVARGKSVQYLKDEKALEDYLISMGLEEASLELA-SGEVRVGQDLREVINDAL 599

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEKSEKSW 653
           ++  L++  +  ++++ +EQA I+G  N E + E +    +A+++A RL+ IAE++E+ W
Sbjct: 600 RLRSLMEGLHSRYNRSVVEQAAIAGALNVELNGERDEYQLIAAEVARRLDVIAEETERGW 659

Query: 654 HGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
             ++     + ++R+ RGV+E  VL+ + I S  +++      R++E Y     L     
Sbjct: 660 EAAVTAEGGLKLERMVRGVKEAAVLDMALIGSSDARHIDQLKARLKEVYGAPPVLRRRDG 719

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
             +I+GP +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK+TDA+ 
Sbjct: 720 TQEISGPRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVTDATD 779

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LFSRLMGDEVEPRR+FIQEN+L    LDI
Sbjct: 780 ADGLFSRLMGDEVEPRRDFIQENALSVANLDI 811


>gi|259910292|ref|YP_002650648.1| DNA gyrase subunit B [Erwinia pyrifoliae Ep1/96]
 gi|224965914|emb|CAX57447.1| DNA gyrase subunit B [Erwinia pyrifoliae Ep1/96]
 gi|310765871|gb|ADP10821.1| DNA gyrase subunit B [Erwinia sp. Ejp617]
          Length = 802

 Score =  943 bits (2437), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/804 (50%), Positives = 547/804 (68%), Gaps = 10/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185
           VVNALS  L+L I+REG +++  +++G+    L VTG   + TGT V F PS   F+   
Sbjct: 122 VVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L EHP +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L         S   +    L + + +     K+IK   
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANASAPALGGKPLEDLVSEFNSTRKMIKRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-----KSWHGSINNS 660
             +    +   +     +  + +    +    L   LN   +           +  ++  
Sbjct: 599 RRYPVALLNALIYHATLSDVTAEAPVQNWLDGLVKYLNDNDQHGSSYSGVVRENRELHLF 658

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +++    GV   + L+   +     +       ++         +     +  I    
Sbjct: 659 EPVLRVRTHGVDTDYPLDNEFVLGGEYRKICALGEQLRGLIEEDAYIERGERRQPIASFE 718

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             +D +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD LF+ L
Sbjct: 719 QAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAVAADQLFTTL 778

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 779 MGDAVEPRRAFIEENALRAANIDI 802


>gi|307942709|ref|ZP_07658054.1| DNA gyrase, B subunit [Roseibium sp. TrichSKD4]
 gi|307773505|gb|EFO32721.1| DNA gyrase, B subunit [Roseibium sp. TrichSKD4]
          Length = 817

 Score =  943 bits (2437), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/805 (59%), Positives = 606/805 (75%), Gaps = 5/805 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D  Q + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+AD
Sbjct: 14  DPNQGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAD 73

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            +TV LN DGS TV+DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 74  HVTVCLNADGSVTVADNGRGIPTDVHSEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 133

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L+LRI R    + M F +G    PL V G A    GT+VTFLPS + F
Sbjct: 134 VGVSVVNALSTKLELRIWRNDQEHHMEFAHGEAVAPLKVVGPANGQKGTQVTFLPSPETF 193

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +  +F++ TL+HRLREL+FLNS V+I L DKR  E R   ++Y+GG+EAFV YLDR K P
Sbjct: 194 TKTEFDFGTLEHRLRELAFLNSGVRIILTDKRGVEERAEELYYEGGLEAFVRYLDRAKHP 253

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L+++PI I   +D I+++ AM WND YHE VLCFTNNIPQ+DGGTHL+G R+ALTRQ+T 
Sbjct: 254 LIETPITISTEKDGITVEAAMWWNDSYHEQVLCFTNNIPQRDGGTHLAGFRAALTRQVTG 313

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y E +   KK+K SV GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES ++ 
Sbjct: 314 YAESTGLLKKEKVSVTGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESQMSQ 373

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS W EE+P  AK +V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERD 
Sbjct: 374 ALSEWFEENPAPAKAVVSKVVEAASAREAARKARELTRRKGALDIASLPGKLADCQERDA 433

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELFLVEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS EIGTLITALG
Sbjct: 434 SKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSNEIGTLITALG 493

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG++ F++ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP L+ NG++YI +PPLY
Sbjct: 494 TGIGKEEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELVENGYIYIAQPPLY 553

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +TRGKS QY+KD+ +LE+YLI+  + +       +  V +  DLR  I+ A  +  +  
Sbjct: 554 KVTRGKSEQYLKDQAALENYLISGGVEDASL-TLANGEVRTSEDLRQVIETAQSLTNIFD 612

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSI-NN 659
             +  + +  +EQA I+G  N +  ++       A+ +A RL+ +A++ E+ W G    +
Sbjct: 613 GLHSRYSRDVVEQAAIAGALNPDILEDRTKATEAAAYVARRLDILADEFERGWEGEAQED 672

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             ++ KR  RGV+E  +++ + + S  ++     +  ++E Y     L       +I GP
Sbjct: 673 GSLVFKRTVRGVEEAAIIDPALLSSADARRLDSQATHLQEIYGKAAVLRRRDTSTEIRGP 732

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            +LL  IF+ G+KGISMQRYKGLGEMN  QLWETTL+P+ RSLL+VK+ +A  ADD+F++
Sbjct: 733 RALLQQIFAFGQKGISMQRYKGLGEMNPEQLWETTLDPNVRSLLQVKVREADDADDIFTK 792

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGDEV+PRREFIQ+N+L    LDI
Sbjct: 793 LMGDEVDPRREFIQDNALNVANLDI 817


>gi|227823871|ref|YP_002827844.1| DNA gyrase subunit B [Sinorhizobium fredii NGR234]
 gi|227342873|gb|ACP27091.1| DNA gyrase, subunit B [Sinorhizobium fredii NGR234]
          Length = 811

 Score =  943 bits (2437), Expect = 0.0,   Method: Composition-based stats.
 Identities = 523/812 (64%), Positives = 646/812 (79%), Gaps = 10/812 (1%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D  +        Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MTDISETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+ADI+TVTLN DGSCTV+DNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHADIVTVTLNPDGSCTVTDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL+I+R G ++EMSF +G+ D PL VTG AG++TGTEVTF
Sbjct: 121 VSGGLHGVGVSVVNALSVSLKLKIRRAGKVHEMSFTHGVADGPLTVTGDAGSETGTEVTF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS   FS  +F++ TL+HRLREL+FLNS V+I L DKR  + R   M Y GG+EAFV+Y
Sbjct: 181 LPSEQTFSKTEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDEMMYDGGLEAFVAY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 241 LDRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ L+ WLEE+P +AKI+V KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 361 VESLVNEALNVWLEENPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG
Sbjct: 421 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGT IG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LY
Sbjct: 481 TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY +TRGKS QY+KDE++LEDYLI   L E       S  V +  D R  I+DAL
Sbjct: 541 IAQPPLYKVTRGKSAQYLKDEKALEDYLITMGLEEASL-TLGSGEVRAGQDFREVINDAL 599

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSW 653
           ++  L+   +  +++  +EQA I+G  N E  S Q+    +A+++A RL+ IAE++E+ W
Sbjct: 600 RLRSLMDGLHSRYNRAIVEQAAIAGALNTELNSHQDDYQKVAAEVARRLDVIAEETERGW 659

Query: 654 HGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            GS+     + ++R+ RGV+E  VL+ + I S  +++    + +++E Y     L     
Sbjct: 660 VGSVTAEGGLKLERMVRGVKEVAVLDMALIGSSDARHIDQLTAKLKEVYAAPPVLRRRDG 719

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
             +I+GP +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK++DA+ 
Sbjct: 720 THEISGPRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVSDATD 779

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LFSRLMGDEVEPRR+FIQEN+L    LDI
Sbjct: 780 ADGLFSRLMGDEVEPRRDFIQENALSVANLDI 811


>gi|37524036|ref|NP_927380.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36783459|emb|CAE12299.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 804

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/806 (49%), Positives = 548/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   + V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSEVIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS  L+L I+R+G ++E ++  G+  +PL V G     TGT V F PS D F    
Sbjct: 122 VVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRDNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F +D L  RLRELSFLNS V I LIDKR+    E    Y+GGI+AFV +L+++K P+  
Sbjct: 181 EFQHDILAKRLRELSFLNSGVSIRLIDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 NVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E++++Y ++ +L        +    +    L   + +   + K+IK   
Sbjct: 539 KGKQEQYIKDDEAMDEYQLSIALDGASLYTNEHVPALRGEPLEKLVTEFNGVQKIIKRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEK-----SEKSWHGSIN 658
             +  + +   +       E+  +          L  RLN   +           +    
Sbjct: 599 RLYPLSLLNSLIYHPNLTEETLSDKAKVEEWIEMLVTRLNDSEQNGSSYSYRLHENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + ++     GV   ++L+   +         +  +++         +     +  ++ 
Sbjct: 659 MYEPVLCVRTHGVDTDYLLDFDFVHGGEYHRITLLGDKLRNLIEEDAYIERGERRQPVSS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT+NP+TR ++RV + DA   D LF+
Sbjct: 719 FEQALNWLTKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAIATDQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|118590457|ref|ZP_01547859.1| DNA gyrase subunit B [Stappia aggregata IAM 12614]
 gi|118436920|gb|EAV43559.1| DNA gyrase subunit B [Stappia aggregata IAM 12614]
          Length = 817

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/805 (60%), Positives = 608/805 (75%), Gaps = 5/805 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +    + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+AD
Sbjct: 14  ETNGGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAD 73

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            +TVTLN DGS TVSDNGRGIPTDLH EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 74  HVTVTLNPDGSVTVSDNGRGIPTDLHSEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 133

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L+LRI R G  + M+F +G    PL V G A    GTEVTFLPS D F
Sbjct: 134 VGVSVVNALSTKLELRIWRNGQEHSMTFAHGDAVAPLKVVGPANGRKGTEVTFLPSPDTF 193

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +  +F++ TL+HRLREL+FLNS V+I L DKR  E R   +FY+GG+EAFV YLDR K P
Sbjct: 194 TKTEFDFSTLEHRLRELAFLNSGVRIILTDKRGVEDRVEELFYEGGLEAFVRYLDRAKHP 253

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L+++PI ++  RD I+++ AM WND YHE+VLCFTNNIPQ+DGGTHL+G R+ALTRQ+T 
Sbjct: 254 LIEAPINMRAERDGITVEAAMWWNDSYHEHVLCFTNNIPQRDGGTHLAGFRAALTRQVTG 313

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y E +   KK+K ++ GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ ++ 
Sbjct: 314 YAESTGLMKKEKVNLSGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVENLISQ 373

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS WLEE+P  AK IV KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERD 
Sbjct: 374 ILSEWLEENPAPAKTIVSKVVEAASAREAARKARELTRRKGALDIASLPGKLADCQERDA 433

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELFLVEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS EIGTLITALG
Sbjct: 434 SKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSNEIGTLITALG 493

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG++ F++ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI NG++YI +PPLY
Sbjct: 494 TGIGKEEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPQLIENGYIYIAQPPLY 553

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + RG+S QY+KD+++LEDYLI Q L E       +  V +  DLR   + A  I  +  
Sbjct: 554 KVKRGQSEQYLKDQKALEDYLIGQGLDEASL-TLANGEVRTGQDLRAVAETARTISDIFD 612

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGS-INN 659
             +  +++  +EQA I+G    E   +       A+ +A R++ +A++ E+ W G   ++
Sbjct: 613 GLHSRYNRDVVEQAAIAGALTPEILDDQGKAEEAATYIARRMDILADEFERGWVGEARDD 672

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             ++ KR  RGVQE   ++ + + S  ++     +  + E Y     L       +I GP
Sbjct: 673 GSLVFKRTVRGVQEVATIDAALLGSSDARRLAAHAGHLNEIYGKAAVLRRKDISTEIRGP 732

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            +LL  I++ G+KGIS+QRYKGLGEMN  QLWETTL+P+ RSLL+VK+ +A  ADD+F++
Sbjct: 733 RALLTQIYAAGQKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKVREADDADDIFTK 792

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGDEVEPRREFIQEN+L    LDI
Sbjct: 793 LMGDEVEPRREFIQENALAVANLDI 817


>gi|150398412|ref|YP_001328879.1| DNA gyrase subunit B [Sinorhizobium medicae WSM419]
 gi|150029927|gb|ABR62044.1| DNA gyrase, B subunit [Sinorhizobium medicae WSM419]
          Length = 811

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 519/812 (63%), Positives = 642/812 (79%), Gaps = 10/812 (1%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +        Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MTEISETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD++TVTLN DGS TV+DNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHADLVTVTLNPDGSVTVTDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D PL VTG AG+DTGTEVTF
Sbjct: 121 VSGGLHGVGVSVVNALSVSLKLKIRRSGKIHEMSFTHGVADGPLKVTGDAGSDTGTEVTF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS   FS  +F +  L+HRLREL+FLNS V+I L DKR  + R   + Y GG+EAFV+Y
Sbjct: 181 TPSEQTFSNIEFEFARLEHRLRELAFLNSGVRIVLTDKRHSDIRREELMYDGGLEAFVAY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+Q P+ I+G +D I++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R+A
Sbjct: 241 LDRAKKPLVQKPVSIRGEKDGITVEVAMWWNDSYHENMLCFTNNIPQRDGGTHMAGFRAA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITSYADSSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ L  WLEEHP +AKI+V KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 361 VESLVNEALGVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE+QAILPLRGKILNVERARFDKMLSSQEIG
Sbjct: 421 DCSERDPAKSELFLVEGDSAGGSAKQGRSRESQAILPLRGKILNVERARFDKMLSSQEIG 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGT IG D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LY
Sbjct: 481 TLITALGTSIGPDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPVLIERGHLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY + RGKS+QY+KDE++LEDYLIN  L E       S  V +  DLR  I+DAL
Sbjct: 541 IAQPPLYKVARGKSVQYLKDEKALEDYLINMGLEEASLELA-SGEVRAGQDLREVINDAL 599

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSW 653
           ++  L+   +  ++++ +EQA I+G  N E + + N    +A+++A RL+ IAE++E+ W
Sbjct: 600 RLRSLMDGLHSRYNRSVVEQAAIAGALNVELNGQRNEYQQIAAEVARRLDVIAEETERGW 659

Query: 654 HGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
              +     + ++R+ RGV+E  VL+ + I S  +++     +R++E Y     L     
Sbjct: 660 AAEVTAEGGLKLERMVRGVKEAAVLDMALIGSSDARHIDQLKSRLKEVYGAPPMLRRRDG 719

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
             +I+GP +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ 
Sbjct: 720 TQEISGPRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDATD 779

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LFSRLMGDEVEPRR+FIQEN+L    LDI
Sbjct: 780 ADGLFSRLMGDEVEPRRDFIQENALSVANLDI 811


>gi|126208297|ref|YP_001053522.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae L20]
 gi|126097089|gb|ABN73917.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 810

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/813 (50%), Positives = 551/813 (67%), Gaps = 13/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q +SYD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +T++ D S +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 61  CKDIIITIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L+L I+REG+++E  +  G  D PL V G   + TGT V F PS D
Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTVIGDT-DKTGTMVRFWPSLD 179

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF +  +F Y  L  RLRELSFLNS V I LID+R  +       Y+GGI+A+V YL+  
Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIRLIDERDGKE--EHFKYEGGIKAYVEYLNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +  +P  +   +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 238 KTHIHNTPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297

Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y++ S   KK   ++   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR  VE
Sbjct: 298 LKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ LS +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 358 SSMNEALSEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI 
Sbjct: 478 ITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYVYIA 537

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  +Y++D + +  Y I+ +L        +    +S   L + I     +
Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVSEGAPALSGVALESLISQYNGV 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSE 650
            KL       +    + + + S   + E    Q    +   +   +L          +SE
Sbjct: 598 QKLFDRLSRCYPVALLNELIYSPALSAEFAKVQAKVTAWNEQFVAKLMEKETGGSFYRSE 657

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             ++      +  +     G+   + L+ + I S          N + +       ++  
Sbjct: 658 VFFNTERQVYEPEIVVTTHGMDTTYRLDFNFISSNEYAKITALGNELNDLLSPSAYVMRG 717

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             + +++     LD +    RKG+++QRYKGLGEMN  QLWETT++P  R +L+V ITDA
Sbjct: 718 ERRQEVSSFAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 777

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             AD LFS LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIESNALYAQLDI 810


>gi|323137236|ref|ZP_08072315.1| DNA gyrase, B subunit [Methylocystis sp. ATCC 49242]
 gi|322397594|gb|EFY00117.1| DNA gyrase, B subunit [Methylocystis sp. ATCC 49242]
          Length = 810

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/812 (58%), Positives = 610/812 (75%), Gaps = 11/812 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+N +N   + Y A+SI++L+GLDAV+KRP MYIGDTD  +GLHHM+YEV+DNAIDE+L
Sbjct: 1   MSENEKNVDPAEYGAESIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  +TVTLN DGSC+V+DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGHATRVTVTLNADGSCSVTDNGRGIPTDIHPEEGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-----NDTGTE 172
           GGLHGVGVSVVNALS WLKLRI R G  + M F NG     L + G A         GTE
Sbjct: 121 GGLHGVGVSVVNALSVWLKLRIWRNGKEHAMEFANGDAVTKLAIVGDAPIEDGKPKRGTE 180

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTFLPS+  F++ +F+Y T++HRLREL+FLNS V+I L D R  E +   +FY+GG+EAF
Sbjct: 181 VTFLPSTATFTMVEFDYATIEHRLRELAFLNSGVRIVLTDARHAEVKREELFYEGGLEAF 240

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +LDR K PL+ +PI + G RD+IS+++A+ WND YHENVL FTNNIPQ+DGGTHL+G 
Sbjct: 241 VRWLDRAKSPLISAPILVNGKRDHISVEVALWWNDSYHENVLAFTNNIPQRDGGTHLAGF 300

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTRQIT Y + S  +K++K  + GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 301 RAALTRQITGYADSSGLTKREKVDLSGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 360

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R  VE+ +N+ L  WLEEHP EAK IV KV++A+  R+AAR+AR+LTRRKG LD+A+LPG
Sbjct: 361 RPAVENVMNEILGQWLEEHPAEAKNIVSKVVEAAAAREAARKARELTRRKGALDVANLPG 420

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP KSELF+VEGDSAGG+AKQGR R  QA+LPLRGKILNVERARFDKMLSS+
Sbjct: 421 KLADCQERDPAKSELFIVEGDSAGGTAKQGRDRAFQAVLPLRGKILNVERARFDKMLSSE 480

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           +IGTLITALGTG+G+D F+ +KLRYHKIIIMTDADVDGAHIRTL+LTFF+RQMP LI  G
Sbjct: 481 QIGTLITALGTGVGRDEFNADKLRYHKIIIMTDADVDGAHIRTLILTFFYRQMPELIERG 540

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            ++I + PLY +T+GKS QY+KDE +LEDYLI+  L   +          +  DLR  ++
Sbjct: 541 HVFIAQAPLYKVTKGKSTQYLKDERALEDYLIDSLLDGAVLR--TGSEDRAGADLRKVLE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           DA     ++   +  +D+  +EQA ++G      +      LA ++A RL+ IAE++E+ 
Sbjct: 599 DARAFRTVMASLHSRYDRHVVEQAAMAGALAPHGENGEADRLAQEVARRLDAIAEETERG 658

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           W G       + KR  RGV +  +L+ + + S  ++     +  + + +    +LI  GD
Sbjct: 659 WTGEPREGGYVFKRTLRGVTQAVILDAAMLNSSEARKLHERAESLRDVFSAPATLIRRGD 718

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  ++GP +L + +  IGRKG+++QRYKGLGEMNA QLWETTL+ + RSLL+VK+ +A++
Sbjct: 719 EAPLSGPIALYEAMNQIGRKGLTIQRYKGLGEMNAEQLWETTLDREARSLLQVKVKEAAE 778

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ADD+F +LMGD VEPRREFIQEN+L    LD+
Sbjct: 779 ADDIFVKLMGDVVEPRREFIQENALSVANLDV 810


>gi|261819374|ref|YP_003257480.1| DNA gyrase subunit B [Pectobacterium wasabiae WPP163]
 gi|261603387|gb|ACX85873.1| DNA gyrase, B subunit [Pectobacterium wasabiae WPP163]
          Length = 805

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 544/806 (67%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I +
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  LKL I R+G ++E  + +G+   PL VTG   N TGT V F PS + F+   
Sbjct: 122 VVNALSEKLKLVIHRDGKLHEQIYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I LID+R  + +     Y GGI+AFV YL+R+K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDER-EKDKADHYHYDGGIKAFVDYLNRNKTPIHP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 240 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L 
Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLV 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 360 DYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P ++  G +YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L             ++   L   + +   + KLI    
Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAQAPALAGEPLEKLVSEHYAVQKLIGRME 599

Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEK-----SWHGSIN 658
               + F+ + +           E     + A  L + LN                    
Sbjct: 600 RRFPRAFLNRLIYQPTLLEADLSERENVQAWAESLVSGLNANEVHGSTYSFVIHHDEERG 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  ++    GV   + L    +     +       ++         +     +  +  
Sbjct: 660 VFEPALRVRTHGVDTDYPLGAGFVAGGEYRKLNQLGEKLRGLIEENAYIERGERRQPVAS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD+LF+
Sbjct: 720 FEQALEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAIAADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR FI+EN+L +  +DI
Sbjct: 780 TLMGDAVEPRRAFIEENALKAMNIDI 805


>gi|33152675|ref|NP_874028.1| DNA gyrase subunit B [Haemophilus ducreyi 35000HP]
 gi|33148899|gb|AAP96417.1| DNA gyrase subunit B [Haemophilus ducreyi 35000HP]
          Length = 810

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/813 (50%), Positives = 552/813 (67%), Gaps = 13/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q +SYD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 61  CQDIIVTIHSDNSISVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L+L I+REG+++E  +  G  D PL + G+  + TGT V F PS  
Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTIIGNT-DKTGTSVRFWPSLA 179

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF +  +F Y  L  RLRELSFLNS V I LID+R  +       Y+GGI+A+V YL+  
Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDEREGKE--EHFKYEGGIKAYVEYLNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +  +P  +   +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 238 KTHIHNTPFYLATEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297

Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y++ S   KK   ++   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR  VE
Sbjct: 298 LKNYMDNSGVVKKVDANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 358 SSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALG GIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI 
Sbjct: 478 ITALGAGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYVYIA 537

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  +Y++D + +  Y I+ +L        +    +S   L   I     +
Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMLQYEIDIALEGAGLYVSEGAPALSGLALEKLISQYNGV 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFI-----AEKSE 650
            KL +     +  T + + + S   + E  ++     +   +L N LN       + +  
Sbjct: 598 QKLFERLVRRYPMTILNELIYSTALSVELAKQQLKITAWTEQLVNTLNTKEVNGSSYQVS 657

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             ++      +  +     G+   + ++ + I S           ++ +       ++  
Sbjct: 658 VYFNSERQIYEPQIVVTTHGMDTTYRIDFNFITSNEYGLIVKLGEQLNDLLADSAYVVRG 717

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             +  ++     LD +    RKG+++QRYKGLGEMN  QLWETT++P  R +L+V I+DA
Sbjct: 718 ERRQAVSTFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNISDA 777

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             AD LFS LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIESNALYANLDI 810


>gi|188535559|ref|YP_001909356.1| DNA gyrase subunit B [Erwinia tasmaniensis Et1/99]
 gi|188030601|emb|CAO98496.1| DNA gyrase subunit B [Erwinia tasmaniensis Et1/99]
          Length = 802

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/804 (50%), Positives = 547/804 (68%), Gaps = 10/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185
           VVNALS  L+L I+REG +++  +++G+    L VTG   + TGT V F PS   F+   
Sbjct: 122 VVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIKLEDKRDGKT--DHYHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NAFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L EHP +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L        DS   +    L + + +     K+IK   
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANDSAPALGGKPLEDLVSEFNSTRKMIKRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-----KSWHGSINNS 660
             +    +   +        S Q    +    L   LN   +           +  ++  
Sbjct: 599 RRYPMALLNALIYHATLGDVSAQAPVQNWLDGLVTYLNDNDQHGSSYSGMVRENRELHLF 658

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +++    GV   + L+   +     +       ++         +     +  I    
Sbjct: 659 EPVLRVRTHGVDTDYPLDNEFVLGGEYRKICALGEQLRGLIEEDAYIERGERRQPIASFE 718

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             ++ +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD LF+ L
Sbjct: 719 QAIEWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAVAADQLFTTL 778

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 779 MGDAVEPRRAFIEENALRAANIDI 802


>gi|90413729|ref|ZP_01221717.1| DNA gyrase subunit B [Photobacterium profundum 3TCK]
 gi|90325198|gb|EAS41695.1| DNA gyrase subunit B [Photobacterium profundum 3TCK]
          Length = 805

 Score =  941 bits (2433), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 551/806 (68%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + I +
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIII 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPTD+H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  ++L I R G+I+   + +G+ D PL   G   + TGT + F PS D F+   
Sbjct: 122 VVNALSEKVELTIYRHGSIHHQIYHHGVPDKPLEAIGET-DKTGTRIRFWPSEDTFTNVV 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI+AFV +L+R+K P+   
Sbjct: 181 FHYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGIKAFVEHLNRNKTPIHSK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ IS+++AM+WNDG+ E + CFTNNIPQ+DGG+HL+G R ALTR + ++++
Sbjct: 240 VFHFDFEREDGISVEVAMQWNDGFQEGIYCFTNNIPQRDGGSHLAGFRGALTRTLNTFMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+  VES +N+ LS
Sbjct: 300 KEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAVESAMNEKLS 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+  K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 EFLLENPSDAKIVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E ++ Y ++ +L        +    I+   L   +       KLI+   
Sbjct: 540 KGKQEQYIKDDEDMDQYQVSLALDNASLFATEGAPAITGLALEELVKQYNAGMKLIERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + +       + +   D+    + A+ L   LN       +           N
Sbjct: 600 RRYPLLMLNEFAYQPRLSIDMLSDETAIEAWATPLVAALNEKQSGESQYSFAIQRDEENN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
            S   V     GV+  + L    + S         S  +         +     K+ ++ 
Sbjct: 660 VSLPQVIVRTHGVEYDYTLSYDLLNSREYSKLADLSEALNGLLEDNAYVQRGERKLSVSS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD+LF+
Sbjct: 720 FKEGLDWLIKESRRGVYLQRYKGLGEMNPEQLWETTMDPESRRMLQVTINDAVAADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+EN+L    LD+
Sbjct: 780 TLMGDQVEPRRNFIEENALKVANLDV 805


>gi|320539857|ref|ZP_08039516.1| DNA gyrase, subunit B [Serratia symbiotica str. Tucson]
 gi|320030043|gb|EFW12063.1| DNA gyrase, subunit B [Serratia symbiotica str. Tucson]
          Length = 804

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/806 (50%), Positives = 547/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++ D S +V D+GRGIPT LH EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  AIHADNSVSVQDDGRGIPTGLHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG ++E ++ +G    PL V G   + TGT V F PS   F+   
Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYGHGEPQAPLKVVGET-DQTGTMVRFWPSYQTFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRTD--REDHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+E
Sbjct: 239 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYME 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ERDP  S
Sbjct: 359 DYLMENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLVGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G+++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ YLI+ ++         S   ++   L   + +   + KLI    
Sbjct: 539 KGKQEQYIKDDEAMDQYLISIAMDGASLHINASAPPLAGEQLEKLVAEYYSVQKLIDRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSINN---- 659
             + +  + + +           DQ         LA  LN   +        +  N    
Sbjct: 599 RRYPRALLNRLIYQPTLGEGDLSDQTKVKEWIGSLAQLLNDKEQHGSNYDFVTFENRERQ 658

Query: 660 -SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  ++    GV   + L+   I     +       ++         +        +  
Sbjct: 659 MFEPALRIRTHGVDTDYQLDFDFIHGGEYRKICQLGEKLRGLIEEGAFIERGERCQPVDS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              +L+ +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV I DA  AD LF+
Sbjct: 719 FEQVLEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPESRRMLRVTIKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRVFIEENALKAANIDI 804


>gi|15603341|ref|NP_246415.1| DNA gyrase subunit B [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|12721859|gb|AAK03560.1| GyrB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 806

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/810 (50%), Positives = 551/810 (68%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +Y A+SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSNNTPE-NYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  ITVT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  AKDITVTIHTDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G ++E  +  G    PL   G   + TGT V F PS  
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQIYHLGEPQAPLAAIGET-DQTGTTVRFWPSPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  +F YD L  RLRELSFLNS V I L DKR+   R+    Y+GGI+AFV YL+R+K
Sbjct: 179 IFNNIEFEYDILAKRLRELSFLNSGVSIKLFDKRND--RQDHFHYEGGIQAFVEYLNRNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q P      +D I ++++M+WND ++ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHQKPFYFSTEKDGIGVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++    +KK K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NNYMDNEGHNKKSKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESVM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P +AKIIV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ER
Sbjct: 357 NEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++  KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 477 LGCGIGRDEYNPEKLRYHSIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGHVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++  Y +  +L        ++   +S   L + + +   + K+
Sbjct: 537 LYKVKKGKQEQYIKDDEAMVQYEVALALENAALYVNENAPAMSGLALESLVSEYNAVQKM 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRL-----NFIAEKSEKSW 653
           I      + +  +++ +       E    Q+   +  + L ++L     N         +
Sbjct: 597 IGRLTRYYPEVVLKELIYHPELTSELMADQKEVENWIATLVDKLVAKESNGNHYSYRTVF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +   +  + ++     G+   + L                  ++         ++    K
Sbjct: 657 NSERHLHEAVLTVRTHGIDTDYFLNFQFATGSEYARIVKLGKQLTGLIEEGAYIMRGERK 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           ++++     ++ +    R+G+ +QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 717 LEVSSFEQAIEWLVKESRRGLMVQRYKGLGEMNPEQLWETTMDPNARRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LDI
Sbjct: 777 DLLFTTLMGDEVEPRREFIESNALHANLDI 806


>gi|16272510|ref|NP_438724.1| DNA gyrase subunit B [Haemophilus influenzae Rd KW20]
 gi|1170145|sp|P43701|GYRB_HAEIN RecName: Full=DNA gyrase subunit B
 gi|1573554|gb|AAC22225.1| DNA gyrase, subunit B (gyrB) [Haemophilus influenzae Rd KW20]
          Length = 806

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+G GIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGGGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + KL
Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISTNAPAMNALVFEKLVAEYNSVQKL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653
           I     ++    ++  +     + E  +E     +       +L     ++ +      +
Sbjct: 597 IGRLNRHYPAPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      + ++     G+   + L    +           + ++         +I     
Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      ++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  A
Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806


>gi|222147027|ref|YP_002547984.1| DNA gyrase subunit B [Agrobacterium vitis S4]
 gi|221734017|gb|ACM34980.1| DNA gyrase subunit B [Agrobacterium vitis S4]
          Length = 811

 Score =  940 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 511/812 (62%), Positives = 638/812 (78%), Gaps = 10/812 (1%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++     N  +++Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MTETTDEANAASTAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+ADI+TVTLN DGS TV+DNGRGIPTD+H  EGISAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHADIVTVTLNADGSVTVTDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L ++I+R G ++EMSF +G+ D PL VTG     +GTE+TF
Sbjct: 121 VSGGLHGVGVSVVNALSVKLSMKIRRHGKVHEMSFTHGVADAPLAVTGDYQGRSGTEITF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS++ F+  +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV Y
Sbjct: 181 LPSTETFTQVEFDYGTLEHRLRELAFLNSGVRILLTDKRKSDIRQEEMLYDGGLEAFVRY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+ +P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 241 LDRSKKPLVSNPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY + S  +KK+K ++ G+DCREG ++VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITSYADSSGITKKEKVTLQGEDCREGLSAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS W EEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 361 VESLVNEALSTWFEEHPTEAKILVGKVVEAAVAREAARKARELTRRKGALDIASLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQEIG
Sbjct: 421 DCSERDPAKSELFLVEGDSAGGSAKQGRSRERQAILPLRGKILNVERARFDKMLSSQEIG 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGT IG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LY
Sbjct: 481 TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY +TRGKS+QY+KDE++LE+YLI   L +       S  V +  DLR  + DAL
Sbjct: 541 IAQPPLYKVTRGKSIQYLKDEKALEEYLIGMGLDDASLKLG-SGEVRAGQDLREVVQDAL 599

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSW 653
           ++  LI   +  +++  +EQA + G  N E  +++E     A+++A RL+ IAE++E+ W
Sbjct: 600 RLRSLIDGLHSRYNRNVVEQAAVVGALNHELTANRERAEQTAAEVAKRLDLIAEETERGW 659

Query: 654 HGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            G +     +  +R+ RGV+E   L+ + I S  +++    + R+ + Y     L     
Sbjct: 660 EGFVTEEGGLRFERMVRGVKEVAALDVALIGSADARHIDQLATRLNDIYGQPPVLTRKDG 719

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  I+GP +LLD +FS GRKG+SMQRYKGLGEMNA QLWETTL+P+ RSLL+V++ DA+ 
Sbjct: 720 QQTISGPRNLLDAVFSFGRKGLSMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDATD 779

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LFSRLMGDEVEPRR+FIQEN+L    LDI
Sbjct: 780 ADSLFSRLMGDEVEPRRDFIQENALNVANLDI 811


>gi|163757528|ref|ZP_02164617.1| DNA gyrase subunit B [Hoeflea phototrophica DFL-43]
 gi|162285030|gb|EDQ35312.1| DNA gyrase subunit B [Hoeflea phototrophica DFL-43]
          Length = 811

 Score =  940 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 508/806 (63%), Positives = 640/806 (79%), Gaps = 5/806 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +D    + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 7   TDPTVEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D +TVTLN DGS TV+DNGRGIPTD+H+ EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 67  DRVTVTLNPDGSVTVTDNGRGIPTDMHQGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WLKL ++R+G I+E+ F +G+ D PL V G  G++TGTEVTF+PSS+ 
Sbjct: 127 GVGVSVVNALSVWLKLVVRRKGKIHEIRFTHGVADAPLQVLGDCGDETGTEVTFMPSSET 186

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ DF++ TL+HRLREL+FLNS V+I L D+R  + +E+ ++Y+GG+EAFV YLDR KK
Sbjct: 187 FTMIDFDFGTLEHRLRELAFLNSGVRILLADRRHSDAKELELYYEGGLEAFVRYLDRSKK 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           PL+  P+ + G +D I+++LAM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ 
Sbjct: 247 PLVNDPVTLIGEKDGITVELAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQMV 306

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ VN
Sbjct: 307 SYADVSGMTKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENLVN 366

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             LS+WLEEHP EAK +V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADCSERD
Sbjct: 367 STLSSWLEEHPTEAKTLVGKVIEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL
Sbjct: 427 PAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +PPL
Sbjct: 487 GTGIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPVLIERGHLYIAQPPL 546

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y ++RGKS QY+KDE+++E+YL++  L E          V +  DL++ I DAL++  L+
Sbjct: 547 YKVSRGKSSQYLKDEKAMEEYLVSSGLEEAALELST-GEVRTGADLKDTITDALRMRMLL 605

Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHG-SIN 658
           +  +  +D T +EQA I+G  N E   D   +  +A+++A RL+ ++E+SE+ W G +  
Sbjct: 606 ESLHSRYDHTVVEQAAIAGALNPERTTDPASSDDMAAEVARRLDMVSEESERGWTGAATE 665

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           N  +  +R+ RGV+E   L+   I S  ++     + ++ + Y     L      ++I+G
Sbjct: 666 NGGLRFERMVRGVKESVHLDAGLIGSQDARMIDQMNAKLRDVYTEPPVLRRKEGGLQISG 725

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LLD +FS+GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+V++ DA  AD LFS
Sbjct: 726 PRELLDAVFSVGRKGLALQRYKGLGEMNAEQLWETTLDPNARSLLQVRVNDAVDADSLFS 785

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           RLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 786 RLMGDEVEPRREFIQDNALSVANLDI 811


>gi|50123356|ref|YP_052523.1| DNA gyrase subunit B [Pectobacterium atrosepticum SCRI1043]
 gi|49613882|emb|CAG77334.1| DNA gyrase subunit B [Pectobacterium atrosepticum SCRI1043]
          Length = 805

 Score =  940 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 548/806 (67%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I +
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185
           VVNALS  LKL I REG ++E ++ +G+   PL VTG   + TGT V F PS + FS   
Sbjct: 122 VVNALSEKLKLVIHREGKLHEQTYKHGVAQAPLAVTGET-DRTGTTVRFWPSHETFSNVL 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I LID R  + +     Y GGI+AFV YL+R+K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDDR-EKDKADHYHYDGGIKAFVDYLNRNKTPIHP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 240 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VES VN+ L 
Sbjct: 300 KEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLVNEKLV 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 360 DYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P ++  G +YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L             ++   L   + +   + KLI    
Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAQAPALAGEPLEKLVSEHYAVQKLIGRME 599

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658
               +  + + +     +     ++E   + A  L + LN                   +
Sbjct: 600 RRFPRPLLNRLIYQPTLSEADLSEREKVQAWAESLISGLNANEVHGSTYSFVVHHDEERS 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  ++    GV   + L    +     +   +   ++         +     +  +  
Sbjct: 660 VFEPALRVRTHGVDTDYPLGAGFVAGGEYRKLNLLGEKLRGLIEEDAFIERGERRQPVAS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD+LF+
Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAIAADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR FI+EN+L +  +DI
Sbjct: 780 TLMGDAVEPRRAFIEENALKAMNIDI 805


>gi|220933197|ref|YP_002512096.1| DNA gyrase, B subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994507|gb|ACL71109.1| DNA gyrase, B subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 807

 Score =  940 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/810 (51%), Positives = 557/810 (68%), Gaps = 10/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D  Q  +YD+ +I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MTDPQQAKTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ DGS +V D+GRGIP D+H EEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 61  CNKIQVIIHSDGSVSVQDDGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I R   ++   +  G+ D PL   G     TGT V F PS++
Sbjct: 121 HGVGVSVVNALSEWLELTIFRNSRVHRQVYRLGVPDAPLAEVGDTE-LTGTRVHFRPSTE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+YD L  RLRELSFLNS V+I L D+RS +       Y+GGI AFV +L+R+K
Sbjct: 180 IFSDTEFHYDILSKRLRELSFLNSGVRIQLSDERSGKE--DVFEYQGGIRAFVEHLNRNK 237

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL Q+ I     RD+I++++A++WND Y EN+ CFTNNIPQ+DGGTH++G R+ALTR +
Sbjct: 238 TPLHQNVIYCVADRDDITVEVALQWNDSYQENIFCFTNNIPQRDGGTHMAGFRAALTRGL 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+E     KK K +  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV++VVE  +
Sbjct: 298 NQYMEAEGILKKQKVATTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKAVVEGVL 357

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L ++L E+P +AK+I  K++DA+  RDAARRAR++TRRKG LD+A LPGKLADC E+
Sbjct: 358 YDHLQSFLLENPGDAKVITAKIIDAARARDAARRAREMTRRKGALDVAGLPGKLADCQEK 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 418 DPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 477

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 478 LGCGIGKDEFNADKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPVLIERGHVYIAQPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QYVKDE  L + L+  +L +   +       +S   L +     + +   
Sbjct: 538 LYKVKKGKQEQYVKDELELNNLLLQMALEDARLMIHPEAPPVSGEALEDLARRYIGVMGA 597

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIAEKSEKSWHGSIN 658
           ++     HD+  +E+ + S   +    +  +   +    L   L   A  + +    ++ 
Sbjct: 598 VERLSRRHDRDLLERMIFSTPMDPARIEDPQAIRAWFDGLVEGLRSDAAGAARYTVDAVP 657

Query: 659 NS----DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
           +     ++ V R+  G ++          S   +  R  + R++       ++     + 
Sbjct: 658 DGEGGTEVRVTRLIHGAEQVERFGRDFFASPEYRAIRDLAERLDGLLDQGAAVHRGERRQ 717

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            ++    ++D +    R+G+++QRYKGLGEMN  QLWETT+N +TR LL+VKI DA +AD
Sbjct: 718 PVSNFRQVMDWLLGEARRGLNVQRYKGLGEMNPEQLWETTMNAETRRLLQVKIEDAVRAD 777

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ++F+ LMGD+VEPRREFI+ N+L +  +DI
Sbjct: 778 EVFTTLMGDQVEPRREFIEANALTASNIDI 807


>gi|238793146|ref|ZP_04636774.1| DNA gyrase subunit B [Yersinia intermedia ATCC 29909]
 gi|238727519|gb|EEQ19045.1| DNA gyrase subunit B [Yersinia intermedia ATCC 29909]
          Length = 804

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/806 (49%), Positives = 541/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+R+G ++E ++  G+   PL + G   + TGT V F PS   F +  
Sbjct: 122 VVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-DLTGTTVRFWPSFQTFTNNI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI AFV YL ++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAFVEYLSKNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y +  +L             +        + +   + K I    
Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHVNPDAPPLVGEHFEKLVAEHYSVQKTIARME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSE-----KSWHGSIN 658
             + +  +   +       E   +  V       L   LN   +           +    
Sbjct: 599 RRYPRALLNNLIYQPTLKEEDLSDKAVVTQWIDSLVVLLNEKEQHGSSYSSVVRENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   +     +   +   ++         +     ++ ++ 
Sbjct: 659 LFEPILRIRTHGVDTDYDLDFDFVHGGEYRKICLLGEKLRGLIEDGAFVERGERRVSVSS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD LF+
Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAVAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804


>gi|52426304|ref|YP_089441.1| DNA gyrase subunit B [Mannheimia succiniciproducens MBEL55E]
 gi|52308356|gb|AAU38856.1| GyrB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 811

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/815 (50%), Positives = 548/815 (67%), Gaps = 16/815 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N Q  +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSENTQE-NYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CKDIIVTIHEDNSVSVQDDGRGIPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G++YE  +  G  +  L   G   + TGT V F PS  
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVYEQFYSLGEPNEQLKNIGET-DKTGTTVRFWPSPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F Y+ L+ RLRELSFLNS V I L D+R  +       Y+GGI+AFV YL+++K
Sbjct: 179 IFSNTVFEYEILKKRLRELSFLNSGVSIKLFDER--DGANDHFHYEGGIQAFVEYLNQNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +   P      ++ I +++A++WNDGY+EN+ CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 TTIHPKPFYFSIEKEGIGVEVALQWNDGYNENIYCFTNNIPQRDGGTHLAGFRGALTRTL 296

Query: 301 TSYVEKSF-----GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
            SY++K+       + KDK    GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+  
Sbjct: 297 NSYMDKAGLNKKGKNDKDKVETSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKGA 356

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES +N+ L  +LEE+P +AKII  K++DA+  R+AAR+AR++TRRKG LDIA LPGKLA
Sbjct: 357 VESAMNERLQEYLEENPNDAKIIATKIVDAARAREAARKAREMTRRKGALDIAGLPGKLA 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+G
Sbjct: 417 DCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVG 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALG GIG+D ++ +K+RYHK+IIMTDADVDG+HIRTLLLTFF+RQMP +I  G++Y
Sbjct: 477 TLITALGCGIGRDEYNPDKMRYHKVIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVY 536

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY + +GK  QY+KDE ++  Y +  +L +       +   ++   L   + D  
Sbjct: 537 IAQPPLYKVKKGKQEQYIKDEPAMTQYELAIALEDAALYVNANAPAMTGLPLEKLVADYN 596

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-- 651
              ++I+  +  + +  +++ +       E  ++          L   L     +     
Sbjct: 597 NTHQMIERLHRRYPEALLKELIYYPQLTTELMKDTGATEEWTKNLIAVLTEKDTQGNSYS 656

Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
               +      +DI++     GV   + L                 N+++        + 
Sbjct: 657 FRLQYDTERQVNDIILTVRTHGVDTNYTLNYQFATGNEYARIVKLGNQLKGLLEDGAYVT 716

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               K++I+     ++      RKG+++QRYKGLGEMN  QLWETT++PD R +L+V I 
Sbjct: 717 RGNGKLEISSFEQAIEWFVKESRKGLTVQRYKGLGEMNPEQLWETTMDPDARHMLKVTIK 776

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           DA  AD LF+ LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 777 DAVAADQLFTTLMGDEVEPRRDFIESNALRANLDI 811


>gi|114769640|ref|ZP_01447250.1| DNA gyrase subunit B [alpha proteobacterium HTCC2255]
 gi|114549345|gb|EAU52227.1| DNA gyrase subunit B [alpha proteobacterium HTCC2255]
          Length = 805

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/805 (55%), Positives = 580/805 (72%), Gaps = 4/805 (0%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD  I++  Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L  
Sbjct: 1   MSDDQIKSEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAK 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD ++VT++ D S +V DNGRG+P  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADFVSVTIHADESVSVRDNGRGVPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+L+I R+G I+   F +G     L + G A  +TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELKIWRDGKIHIARFEHGDTVKHLEIIGDANGETGTEVRFMAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + FS +++ + TL++RLREL+FLNS V+I L D+R  E  E T+ Y GG++ FV +LDR 
Sbjct: 181 ETFSNREYVFKTLENRLRELAFLNSGVKIILRDERPTEHLETTLLYDGGVKEFVKFLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +++ PI I G +D+I+++ AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KSSVIEDPIYIIGEKDDITVECAMWWNDSYHENVLPFTNNIPQRDGGTHIAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y   S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES 
Sbjct: 301 INNYAASSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ LS W EE+P  AK IV K+++A++ R+AAR+AR+LTRRK      SLPGKLADC +
Sbjct: 361 MNEKLSEWFEENPAHAKEIVTKIVEAALAREAARKARELTRRKTAFGGTSLPGKLADCQQ 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+F+VEGDSAGGSAKQGRSRENQA+LPLRGKILN+ERARFDKML+S++I  LIT
Sbjct: 421 KDPSLSEIFIVEGDSAGGSAKQGRSRENQAVLPLRGKILNIERARFDKMLTSEQITNLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FDI+KLRYHK++IMTDADVDGAHIRTLLLTFFFRQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFDISKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGKS  Y+KD+ SLED+L  Q +             ++  DL   ID+A +   
Sbjct: 541 PLYKVARGKSEVYLKDQVSLEDFLAEQGIEGATL-TLGGGSAMAGPDLARVIDEARQSRT 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658
           ++  F  ++    +EQA I+G  N +       + A  +A RL+ ++ + E+ W G    
Sbjct: 600 ILNAFPTHYSHHILEQAAIAGALNIDQVLSNPQAAADAVATRLDLVSTEYERGWSGRPTQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  +   RI RGV+E   L+G  + S  ++     +N ++E Y              I  
Sbjct: 660 DDGLRFSRILRGVEEVQTLDGKCLKSNEARKLSSMTNSLQEVYSEPSKFTRKEKTTTINA 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL+ + S G KG+S+QRYKGLGEMN  QLWETTL+P+ R  L+VK+ D + ADDLF+
Sbjct: 720 PSDLLNIVNSEGEKGLSLQRYKGLGEMNPGQLWETTLDPEARIFLQVKVEDLADADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804


>gi|307133244|ref|YP_003885260.1| DNA gyrase subunit B [Dickeya dadantii 3937]
 gi|306530773|gb|ADN00704.1| DNA gyrase subunit B [Dickeya dadantii 3937]
          Length = 803

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/804 (50%), Positives = 544/804 (67%), Gaps = 9/804 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G    PL VTG A     T V F PS + F+   
Sbjct: 122 VVNALSEKLELVIRREGKIHRQEYRHGEPQAPLSVTGDADTTG-TTVRFWPSLETFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV YL+R+K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDER-EENKADHFHYEGGIKAFVEYLNRNKTPIHP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 240 QVFYFSAEKDDIGVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +ND L 
Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNDRLV 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 360 DYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G ++I +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I  +L             ++   L   + +   + KLI    
Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAHAPALAGEPLEKLVAEHYGVQKLIDRME 599

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS---WHGSINNS 660
             + +  +   +           DQ         L + LN   +           S    
Sbjct: 600 RRYPRALLNALLYQPTLTEAMLNDQAQAQQWIDSLIHYLNEKEQHGSTYSFLLRQSNERH 659

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           + +++    GV   + L+ + +     +       ++         +     K  +    
Sbjct: 660 EPVLRVRTHGVDSDYALDLAFVQGNEYRKINGLGEKLRGLIEDDAFVERGERKQPVASFE 719

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD+LF+ L
Sbjct: 720 QALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADELFTTL 779

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD VEPRR FI+EN+L  + +DI
Sbjct: 780 MGDAVEPRRAFIEENALKAANIDI 803


>gi|222084213|ref|YP_002542739.1| DNA gyrase, B subunit [Agrobacterium radiobacter K84]
 gi|221721661|gb|ACM24817.1| DNA gyrase, B subunit [Agrobacterium radiobacter K84]
          Length = 811

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 517/806 (64%), Positives = 644/806 (79%), Gaps = 5/806 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++N  N+ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L GYA
Sbjct: 7   TENDGNAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALGGYA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D++TVTLN DGS TV+DNGRGIPTD+H  EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 67  DLVTVTLNPDGSVTVTDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WLKL+I+R+G I EMSF +G+ D PL VTG AG++TGTEV+F+PSS+ 
Sbjct: 127 GVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGSETGTEVSFMPSSET 186

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV YLDR KK
Sbjct: 187 FTMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVRQEEMLYDGGLEAFVKYLDRAKK 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           PL+  P+ I+  +D I++++AM WN+ YHENVLCFTNNIPQ+DGGTH++G R ALTRQIT
Sbjct: 247 PLVDKPVSIRSEKDGITVEVAMWWNESYHENVLCFTNNIPQRDGGTHMAGFRGALTRQIT 306

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY E S  +K++K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN
Sbjct: 307 SYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  WLEEHP +AK++V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADCSERD
Sbjct: 367 EALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL
Sbjct: 427 PAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +PPL
Sbjct: 487 GTGIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPDLIERGHLYIAQPPL 546

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +TRGKS+QYVKDE++ E+YLI Q L +          V +  DLR  I DAL++  L+
Sbjct: 547 YKVTRGKSVQYVKDEKAFEEYLIGQGLDDASLKLGT-GEVRAGEDLRELIFDALRLRTLL 605

Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
            + +  +++  +EQA I+G  N E  SD      L + +A RL+ IAE++E+ W G++ +
Sbjct: 606 GNLHSRYNRAVVEQAAIAGALNAELVSDPARAEGLVNDVARRLDIIAEETERGWTGAVTS 665

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
              +  +R+ RGV+E  VL+ + I S  ++      +R+++ Y     L     + +I+G
Sbjct: 666 EGGLRFERMVRGVKEVVVLDMALIGSQDARLIDQVGSRLKDVYDQPPKLARRDGETEISG 725

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL+T+F+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+V++ DA+ AD LF+
Sbjct: 726 PGMLLETVFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNARSLLQVRVPDATDADGLFA 785

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           RLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 786 RLMGDEVEPRREFIQDNALNVANLDI 811


>gi|54307248|ref|YP_128268.1| DNA gyrase subunit B [Photobacterium profundum SS9]
 gi|46911668|emb|CAG18466.1| Putative DNA gyrase, subunit B [Photobacterium profundum SS9]
          Length = 805

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 547/806 (67%), Gaps = 11/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + I +
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIII 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPTD+H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  ++L I R G I+   + +G+ D PL   G   + TGT + F PS   F+   
Sbjct: 122 VVNALSEKVELTIYRHGFIHHQIYRHGVPDKPLETIGET-DKTGTLLRFWPSEGTFTNVV 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI AFV++L+R+K P+   
Sbjct: 181 FHYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGIRAFVAHLNRNKTPIHAK 239

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGG+HL+G R ALTR + ++++
Sbjct: 240 VFHFDFEREDGIVVEVAMQWNDGFQENIYCFTNNIPQRDGGSHLAGFRGALTRTLNTFMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS
Sbjct: 300 KEGYSKKEKTSTCGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESVMGEKLS 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+  K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 360 EFLLENPSDAKIVCGKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GI
Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PPLY + 
Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E ++ Y ++ +L        +    I+   L   +       KLI+   
Sbjct: 540 KGKQEQYIKDDEDMDQYQVSLALDNASLFATEGAPAITGLALEELVKQYNAGMKLIERMS 599

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +    + +       + E   D+    + A++L   LN       +           N
Sbjct: 600 RRYPLLMLNEFAYQPRLSIEMLSDETAIEAWATQLVAALNEKQSGESQYRFAIQRDEEKN 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                V     GV+  + L    + S         S            +     K  I+ 
Sbjct: 660 VFLPQVIVRTHGVEYDYTLSYDLLNSKEYSKLADLSEAFNGLIEDNAYVQRGERKQSISS 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD+LF+
Sbjct: 720 FKEGLDWLIKESRRGVYLQRYKGLGEMNPEQLWETTMDPESRRMLQVTINDAVAADELFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+EN+L    LD+
Sbjct: 780 TLMGDQVEPRRNFIEENALKVANLDV 805


>gi|121601805|ref|YP_989593.1| DNA gyrase subunit B [Bartonella bacilliformis KC583]
 gi|120613982|gb|ABM44583.1| DNA gyrase, B subunit [Bartonella bacilliformis KC583]
          Length = 809

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/810 (60%), Positives = 618/810 (76%), Gaps = 8/810 (0%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MSD   +     Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L
Sbjct: 1   MSDETTSPTSGDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GYA ++ VTL+ DGSC+V DNGRGIPTD+H  E +SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGYATLVNVTLHADGSCSVCDNGRGIPTDIHPTEHVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRIKR+G I+EMSF +G+ D PL V G  G ++GTE++FLP
Sbjct: 121 GGLHGVGVSVVNALSVWLRLRIKRDGKIHEMSFTHGVADAPLKVVGQCGTESGTEISFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F++  F+++TL+ RLREL+FLNS V I L+++   + R + ++Y+GG+  F+ Y+D
Sbjct: 181 SPETFTMVKFDFETLERRLRELAFLNSGVHILLVNQHHADVRSVELYYEGGLIEFIKYID 240

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + KKPL+ +PI I   +D IS+D+A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 241 QSKKPLIDAPIYITSEKDGISVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           RQI  Y E S  +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE
Sbjct: 301 RQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + VN+GLSAWLEEHP EAKI++ KV++A+  R+AAR+AR+LTRRKG LDI SLPGKLADC
Sbjct: 361 NLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADC 420

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL
Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGT IG+D F  +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI 
Sbjct: 481 ITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 540

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY ++RGKS QY+K+E + ED+LI+  L E       S  V +  DLR F+ DA  +
Sbjct: 541 QPPLYKVSRGKSSQYIKNEAAFEDFLIDSGLEETTLELS-SGEVCAGIDLRQFVQDARLL 599

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWHG 655
            +L+   +  +D+  +EQA I+G FN E+    E    +A  +A RL+ IA+  E+ W G
Sbjct: 600 RQLLNGLHTRYDRNIVEQAAIAGAFNFEAFATPETAQKIADTIAKRLDLIADDMERGWSG 659

Query: 656 SINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
              +   +  +R+ RGV++   L+   I S  ++     +  +++ Y     L       
Sbjct: 660 QYTSDGSLCFERVLRGVKDVITLDAGFINSADARQIGHIAKNLKDIYRDPPLLRRKDKSE 719

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +I GP SLL++IF  G+KGI++QRYKGLGEMNA QLWETTL+PD RSLL+VKI DA+ AD
Sbjct: 720 RIFGPTSLLESIFINGKKGITLQRYKGLGEMNADQLWETTLDPDARSLLQVKINDATDAD 779

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LFS+LMGDEVEPRR FIQ+N+L    LDI
Sbjct: 780 SLFSQLMGDEVEPRRIFIQKNALNVANLDI 809


>gi|260913523|ref|ZP_05920001.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pasteurella dagmatis
           ATCC 43325]
 gi|260632463|gb|EEX50636.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pasteurella dagmatis
           ATCC 43325]
          Length = 806

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/810 (51%), Positives = 551/810 (68%), Gaps = 11/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +Y A+SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSNNTPE-NYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  ITVT++ D S +V D+GRGIP D+H EEGISAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  AKDITVTIHTDNSVSVQDDGRGIPVDIHPEEGISAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G ++E  +  G  + PL   G   + TGT V F PS  
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQIYHLGEPEAPLAAIGET-DQTGTSVRFWPSPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  +F YD L  RLRELSFLNS V I L DKR+   R+    Y+GGI+AFV YL+R+K
Sbjct: 179 IFNNIEFEYDILAKRLRELSFLNSGVSIKLFDKRND--RQDHFHYEGGIQAFVEYLNRNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q P      +D I ++++M+WND ++ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHQKPFYFSTEKDGIGVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NNYMENEGHNKKSKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESVM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P +AKIIV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ER
Sbjct: 357 NEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++  KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 477 LGCGIGRDEYNPEKLRYHSIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGHVYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++  Y +  +L         +   ++   L N + +   + K+
Sbjct: 537 LYKVKKGKQEQYIKDDEAMVQYEVALALENAALYVNANAPAMNGLALENLVSEYNAVHKM 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRL-----NFIAEKSEKSW 653
           I     ++ +T +++ +       E  + +      A  L  +L     N         +
Sbjct: 597 IGRLTRHYPETVLKELIYHPELTTELMAQESAVDIWAKSLVEKLVAKESNGNHYSYRTVF 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +   +  + ++     G+   + L                  ++         ++    K
Sbjct: 657 NSERHLYEAVLTVRTHGIDTDYFLNFQFATGSEYGRIMKLGKQLFGLIEEGAYIMRGERK 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           ++IT     ++ +    R+G+ +QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 717 LEITSFEQAVEWLVKESRRGLMVQRYKGLGEMNPEQLWETTMDPNARRMLKVSIKDAVAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D LF+ LMGDEVEPRREFI+ N+L + LDI
Sbjct: 777 DQLFTTLMGDEVEPRREFIESNALHANLDI 806


>gi|300721093|ref|YP_003710361.1| DNA gyrase subunit B [Xenorhabdus nematophila ATCC 19061]
 gi|297627578|emb|CBJ88097.1| DNA gyrase, subunit B (type II topoisomerase) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 804

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/806 (50%), Positives = 546/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ D I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDKIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS  L+L I+R+G ++E ++ +G+  +PL + G     TGT V F PS D F    
Sbjct: 122 VVNALSEKLELTIRRDGKVHEQTYHHGVPQSPLNIVGDTE-QTGTTVRFWPSMDTFKINT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L+DKR+    E    YKGGI+AFV +L R+K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLVDKRT--NAEDLFHYKGGIKAFVEFLSRNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 NVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYNKKSKVSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y ++ +L             +    L N + +     KLI    
Sbjct: 539 KGKQEQYIKDDDAMEAYQMSIALDGAALYTNPHAPGLKGEALENLVTEFNTTQKLIHRME 598

Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             +    +   +       +  +DQ       S L  RLN   +           +    
Sbjct: 599 RLYPLALLNSLIYHPKLTEDALNDQTKVEEWVSALTIRLNDKEQHGSTYSYHIHENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + ++     GV   + L+   I     +      + I         +     +  I+ 
Sbjct: 659 VFEPVLCIRTHGVDTNYSLDFDFIHGGEYRRITKLGDLIGNLIDEDAYIERGERRQAISS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT+NP+TR ++RV + DA   D LF+
Sbjct: 719 FEHALEWLSKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAIATDLLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|220925683|ref|YP_002500985.1| DNA gyrase subunit B [Methylobacterium nodulans ORS 2060]
 gi|219950290|gb|ACL60682.1| DNA gyrase, B subunit [Methylobacterium nodulans ORS 2060]
          Length = 808

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/809 (58%), Positives = 608/809 (75%), Gaps = 7/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++   ++   +Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L
Sbjct: 1   MAEPARDLTTDTYSADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A ++TVTLN DGSCTVSDNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGHATLVTVTLNPDGSCTVSDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS+WL+LRI R G+ + M F +G    PL V G AG   GTEVTFLP
Sbjct: 121 GGLHGVGVSVVNALSTWLRLRIWRGGHEHAMEFRHGDAVAPLAVVGPAGEKRGTEVTFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + FS+ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+EAFV YLD
Sbjct: 181 SPETFSMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELVYEGGVEAFVRYLD 240

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R K PL+  P+ ++  RD I +++A+ WND YHE VL FTNNIPQ+DGGTH++G R+ALT
Sbjct: 241 RTKTPLVAKPVVVRAERDGIGVEVALWWNDSYHETVLPFTNNIPQRDGGTHMAGFRAALT 300

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           RQIT Y E S  +KK+K ++ GDDCREG T+++S+K+PDP+FSSQTK+KLVSSEVR VVE
Sbjct: 301 RQITGYAESSGIAKKEKVTLSGDDCREGLTAIISVKVPDPKFSSQTKDKLVSSEVRPVVE 360

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + +N+GLS WLEEHP EAK IV KV +A+  R+AAR+AR+LTRRKG LDIASLPGKLADC
Sbjct: 361 NVLNEGLSNWLEEHPSEAKTIVGKVAEAAAAREAARKARELTRRKGALDIASLPGKLADC 420

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVERARFDKMLSSQEIGTL
Sbjct: 421 QERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKMLSSQEIGTL 480

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG++ F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G LYI 
Sbjct: 481 ITALGTGIGREEFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHLYIA 540

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY  ++G+S  Y+KDE +LEDYLI+  +                  L+  +D+A  +
Sbjct: 541 QPPLYKASKGRSAIYLKDERALEDYLIDGGIEGASLRLAT-GVAFGGAQLKALVDEARSV 599

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHG 655
             ++   +  +D+T +EQA I+G       ++      +A ++A RLN IA++ E+ W G
Sbjct: 600 RHILHGLHTRYDRTVVEQAAIAGALRPAVAEDPSHAEVVADEIAKRLNAIADEIERGWEG 659

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
              +   ++ R  RGV++  VL+ + I S  ++     ++ + + Y    +L   G++I 
Sbjct: 660 EAKDGGYVLSRTLRGVRQVAVLDEALISSQEARRLDERTDALRQIYDAPATLQRKGEEIV 719

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           + GP +L +T+ ++GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ D + ADD
Sbjct: 720 LHGPVALFETMMALGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVKDTTDADD 779

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LF +LMGD VEPRREFIQEN+L    LD+
Sbjct: 780 LFVKLMGDVVEPRREFIQENALNVANLDV 808


>gi|297184292|gb|ADI20409.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), b
           subunit [uncultured alpha proteobacterium EB080_L43F08]
          Length = 805

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/805 (55%), Positives = 580/805 (72%), Gaps = 4/805 (0%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD  I++  Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L  
Sbjct: 1   MSDDQIKSEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAK 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD ++VT++ D S +V DNGRG+P  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADFVSVTIHADESVSVRDNGRGVPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+L+I R+G I+   F +G     L + G A  +TGTEV F+ S+
Sbjct: 121 LHGVGVSVVNALSDWLELKIWRDGKIHIARFEHGDTVKHLEIIGDANGETGTEVRFMAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + FS +++ + TL++RLREL+FLNS V+I L D+R  E  E T+ Y GG++ FV +LDR 
Sbjct: 181 ETFSNREYVFKTLENRLRELAFLNSGVKIILRDERPTEHLETTLLYDGGVKEFVKFLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +++ PI I G +D+I+++ AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KSSVIEDPIYIIGEKDDITVECAMWWNDSYHENVLPFTNNIPQRDGGTHIAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y   S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES 
Sbjct: 301 INNYAASSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ LS W EE+P  AK IV K+++A++ R+AAR+AR+LTRRK      SLPGKLADC +
Sbjct: 361 MNEKLSEWFEENPAHAKEIVTKIVEAALAREAARKARELTRRKTAFGGTSLPGKLADCQQ 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+F+VEGDSAGGSAKQGRSRENQA+LPLRGKILN+ERARFDKML+S++I  LIT
Sbjct: 421 KDPSLSEIFIVEGDSAGGSAKQGRSRENQAVLPLRGKILNIERARFDKMLTSEQITNLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FDI+KLRYHK++IMTDADVDGAHIRTLLLTFFFRQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFDISKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGKS  Y+KD+ SLED+L  Q +             ++  DL   ID+A +   
Sbjct: 541 PLYKVARGKSEVYLKDQVSLEDFLAEQGIEGARL-TLGGGSAMAGPDLARVIDEARQSRT 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658
           ++  F  ++    +EQA I+G  N +       S A  +A RL+ ++ + E+ W G    
Sbjct: 600 ILNAFPTHYSHHILEQAAIAGALNIDQVLSNPQSAADAVATRLDLVSTEYERGWSGRPTQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  +   RI RGV+E   L+G  + S  ++     +N ++E Y              I  
Sbjct: 660 DDGLRFSRILRGVEEVQTLDGKCLKSNEARKLSSMTNSLQEVYSEPSKFTRKEKTTTINA 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL+ + S G KG+S+QRYKGLGEMN  QLWETTL+P+ R  L+VK+ D + ADDLF+
Sbjct: 720 PSDLLNIVNSEGEKGLSLQRYKGLGEMNPGQLWETTLDPEARIFLQVKVEDLADADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804


>gi|319406439|emb|CBI80079.1| DNA gyrase subunit B [Bartonella sp. 1-1C]
          Length = 809

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/810 (60%), Positives = 615/810 (75%), Gaps = 8/810 (0%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MSD   +     Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L
Sbjct: 1   MSDETTSPVCDDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GYA ++ VTL+ DGSC+V DNGRGIPTD+H  EGISAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGYATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGISAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRIKR G I+EMSF +G+ D PL +     +++GTE+TFLP
Sbjct: 121 GGLHGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADFPLKIVDDCDSESGTEITFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F++ +F+++TL+ RLREL+FLNS + I L D+R  + + + + Y+GG+  FV ++D
Sbjct: 181 SSETFTMVEFDFETLERRLRELAFLNSGIHIILTDQRHADVQSVELHYEGGLIEFVKHID 240

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + KK L+ +PI I   +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 241 QSKKALIDNPIYITNEKDGMSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           RQI  Y E S  +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE
Sbjct: 301 RQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + VN+GLSAWLEEHP EAKI++ KV++A+  R+AAR+AR+LTRRKG LDI SLPGKLADC
Sbjct: 361 NLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADC 420

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL
Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGT IG+D F  +K+RYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI 
Sbjct: 481 ITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 540

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY ++RGKS QY+K+E + E++LI+  L E          V++  DLR   +DA  +
Sbjct: 541 QPPLYKVSRGKSFQYIKNEAAFEEFLIDAGLEETTLELST-GEVLAGADLRKLAEDARML 599

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            +L+   +  +D+  +EQA I+G+FN E  +  E     A  +ANRL+ IA+  E+ W G
Sbjct: 600 RQLLNGLHTRYDRNIVEQAAIAGIFNSESFTTPEKAQQTADNVANRLDLIADDMERGWTG 659

Query: 656 S-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                  +  +RI RGV+E   L+   I S  ++     +  + E Y     L       
Sbjct: 660 ICAPEGGLYFERILRGVKEVITLDAGLINSADARQIDRIAQNLIEVYSPPPLLHRKDKSE 719

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +I GP SLL++IF  G+KG+++QRYKGLGEMNA QLWETTLNPD R+LL+VKI DA+ AD
Sbjct: 720 RIFGPISLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLNPDARTLLQVKINDATDAD 779

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LFSRLMGDEVEPRR FIQ+N+L    LDI
Sbjct: 780 SLFSRLMGDEVEPRRSFIQDNALSVANLDI 809


>gi|148358143|ref|YP_001249350.1| DNA gyrase subunit B [Legionella pneumophila str. Corby]
 gi|148279916|gb|ABQ54004.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           pneumophila str. Corby]
          Length = 805

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/811 (50%), Positives = 551/811 (67%), Gaps = 14/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    ++SYD+++I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDESL GY
Sbjct: 1   MS---VDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CKEIFVTIHSDESITVKDDGRGIPVDIHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G +YE  + +G+ ++P+  TG + N TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGES-NSTGTQIWFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELS+LNS V I L D+R+ +    T  Y+GGI+AFV +L+++K
Sbjct: 177 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKK--DTFHYEGGIKAFVEHLNKNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+      +   +D I I+LAM+WNDGY E + CFTNNIPQ+DGGTH++G R+ALTR +
Sbjct: 235 TPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRAALTRTL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+  VES V
Sbjct: 295 NNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPAVESCV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +  + +L E+P  AK IV K++DA+  R+AARRAR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 AEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 415 DPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + +D +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ   L+  G++YI +PP
Sbjct: 475 LGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK  QYVKD+E+L DYL   +L             IS   L   +    +++K+
Sbjct: 535 LYKVKRGKQEQYVKDDEALFDYLTQCALDGATFYPAKEAPPISAKSLEELVQHFRRVEKI 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEKSWHG--- 655
           IK +   +    +++     + + E    ++   S   +L   L  +  K+E+       
Sbjct: 595 IKRYKRRYPSDILKRVAYMPMLHQEDFNNLSKIESWCRQLHLSLQQVDSKTEQYKVDIQK 654

Query: 656 --SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     +     G++    ++     S   K      +++         +      
Sbjct: 655 LTEGNQYTPKITVYQHGLENDIPMQVEFFLSKDYKEMVDLGHKLSNLIEEGAYIQRGDKS 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + +     +L+ +    +KG ++QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 715 LPVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRMLQVSIEDAVAA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D++F+ LMGD VEPRR+FI+ N+L +  +DI
Sbjct: 775 DEIFTTLMGDNVEPRRDFIETNALDAENIDI 805


>gi|290473098|ref|YP_003465959.1| DNA gyrase subunit B (type II topoisomerase) [Xenorhabdus bovienii
           SS-2004]
 gi|289172392|emb|CBJ79159.1| DNA gyrase, subunit B (type II topoisomerase) [Xenorhabdus bovienii
           SS-2004]
          Length = 804

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/806 (49%), Positives = 545/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ D I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDKILV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHTDNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS  L+L I+R+G ++E ++ +G+   PL   G     TGT V F PS D F    
Sbjct: 122 VVNALSEKLELIIRRDGKVHEQTYQHGVPQAPLKTVGDTE-QTGTTVRFWPSMDTFKLNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L+DKR+    E    Y+GGI+AFV +L R+K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLVDKRT--NAEDHFHYEGGIKAFVEFLSRNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGG HL G R+A+TR + SY++
Sbjct: 239 NVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYNKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y ++ +L             +    L   + +    +K+IK   
Sbjct: 539 KGKQEQYIKDDDAMEAYQMSIALDGASLYTNQYAPALKGEALEKLVTEFNASNKIIKRME 598

Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAEK-----SEKSWHGSIN 658
             + +  +   +       +  +DQ       S LA  LN   +       +   +    
Sbjct: 599 RLYPQALLNNLIYHPTLTEDALNDQAKVEEWVSTLAISLNDKEQNGSTYSYQIHENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + ++     GV   + L+   I     +        I         +     +  ++ 
Sbjct: 659 IYEPVLCIRTHGVDTNYNLDFDFIHGGEYRRITKLGELIGNLIEEGAYIERGERRQLVSN 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+S+QRYKGLGEMN  QLWETT+NP+TR ++RV + DA   D LF+
Sbjct: 719 FEQALEWLTKESRRGLSIQRYKGLGEMNPDQLWETTMNPETRRMMRVTVKDAIATDLLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|254360771|ref|ZP_04976919.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mannheimia
           haemolytica PHL213]
 gi|261492363|ref|ZP_05988924.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|153091341|gb|EDN73315.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mannheimia
           haemolytica PHL213]
 gi|261311967|gb|EEY13109.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 810

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/813 (50%), Positives = 551/813 (67%), Gaps = 13/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q +SYD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 61  CKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L+L I+REG+++E  +  G  D PL + G+    TGT V F PS D
Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAIIGNTE-KTGTSVRFWPSLD 179

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF +  +F Y  L  RLRELSFLNS V I LID+R  +       Y+GGI+A+V YL+  
Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE--EHFKYEGGIKAYVEYLNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +  +P  +   +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 238 KTHIHNTPFYLTTEKDGIGVEISLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297

Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y++ S   KK   ++   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR  VE
Sbjct: 298 LKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ LS +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 358 SSMNEALSDYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D +++ KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI 
Sbjct: 478 ITALGTGIGRDDYNLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIA 537

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  +Y++D + +  Y I+ +L        +    +S   L N I     +
Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLYVSEDAPALSGVALENLIAQYNGV 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSE 650
            KLI+     +    + + + S   + E   +Q    + + +    L          +  
Sbjct: 598 QKLIERLSRRYPTLLLNELIYSKPLSVEFAKNQANMTAWSEQFVATLMAKEVGGSFYRIN 657

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             ++      +  +     G+   + L+ + I            N + +       ++  
Sbjct: 658 TLFNEERQIYEPEIIVTTHGMDSTYRLDYNFINGNEYARIVALGNELNDLLSDSAYVVRG 717

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             + +I+     LD +    RKG+++QRYKGLGEMN  QLWETT++P  R +L+V ITDA
Sbjct: 718 ERRQEISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 777

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             AD LFS LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIETNALYAQLDI 810


>gi|54295987|ref|YP_122356.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           pneumophila str. Paris]
 gi|53749772|emb|CAH11152.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           pneumophila str. Paris]
          Length = 805

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/811 (50%), Positives = 549/811 (67%), Gaps = 14/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    ++SYD+++I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDESL GY
Sbjct: 1   MS---VDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CKEIFVTIHSDESITVKDDGRGIPVDIHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G +YE  + +G+ ++P+  TG A N TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELS+LNS V I L D+R+ +    T  Y+GGI+AFV +L+++K
Sbjct: 177 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKK--DTFHYEGGIKAFVEHLNKNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+      +   +D I I+LAM+WNDGY E + CFTNNIPQ+DGGTH++G R+ALTR +
Sbjct: 235 TPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRAALTRTL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+  VES V
Sbjct: 295 NNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPAVESCV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +  + +L E+P  +K IV K++DA+  R+AARRAR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 AEKFNDFLLENPTASKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 415 DPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + +D +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ   L+  G++YI +PP
Sbjct: 475 LGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK  QYVKD+E+L DYL   +L             IS   L   +    +++K+
Sbjct: 535 LYKVKRGKQEQYVKDDEALFDYLTQCALDGATFYPAKEAPPISAKSLEELVQHFRRVEKI 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHG--- 655
           IK +   +    +++     + + E         +   +L   L  +  K+E+       
Sbjct: 595 IKRYKRRYPSDILKRVAYMPMLHQEDFNNLPKIENWCRQLHLSLQQVDSKTEQYKVDIQK 654

Query: 656 --SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     +     G++    ++     S   K      +++         +      
Sbjct: 655 LTEGNQYTPKITVYQHGLENDIPMQVEFFLSKDYKEMVDLGHKLSNLIEEGAYIQRGDKS 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + +     +L+ +    +KG ++QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 715 LPVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRMLQVSIEDAVAA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D++F+ LMGD VEPRR+FI+ N+L +  +DI
Sbjct: 775 DEIFTTLMGDNVEPRRDFIETNALDAENIDI 805


>gi|290511692|ref|ZP_06551060.1| DNA gyrase, B subunit [Klebsiella sp. 1_1_55]
 gi|289775482|gb|EFD83482.1| DNA gyrase, B subunit [Klebsiella sp. 1_1_55]
          Length = 806

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/808 (50%), Positives = 550/808 (68%), Gaps = 14/808 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+  +++  +++G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELF--CDSKGVISKNDLRNFIDDALKIDKLIKD 603
           +GK  QY+KD+E+++ Y I  +L           +   ++   L   + +     K+I  
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNANANAPALAGEPLEKLVAEFNATQKMIGR 598

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656
                 K  +++ +           D++      + L + LN   +     K +   +  
Sbjct: 599 MERRFPKAMLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDVRENSE 658

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
           +   + +++    GV   + L+   I     +       ++         +     +  +
Sbjct: 659 LQQFEPIIRVRTHGVDTDYPLDNEFIMGPEYRRICTLGEKLRGLMEEDAYIERGERRQPV 718

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD +    R+G+S+QRYKGLGEMN  QLWETT++PD+R +LRV + DA  AD L
Sbjct: 719 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQL 778

Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803
           F+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 FTTLMGDAVEPRRAFIEENALKAANIDI 806


>gi|319403524|emb|CBI77105.1| DNA gyrase subunit B [Bartonella rochalimae ATCC BAA-1498]
          Length = 809

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/810 (59%), Positives = 615/810 (75%), Gaps = 8/810 (0%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MSD   +     Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L
Sbjct: 1   MSDETTSPACGDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GYA ++ VTL+ DGSC+V DNGRGIPTD+H  EGISAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGYATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGISAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRIKR G I+EMSF +G+ D+PL +     +++GTE+TFLP
Sbjct: 121 GGLHGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADSPLKIVDDCDSESGTEITFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F++ +F+++TL+ RLREL+FLNS + I L D+R  + + + + Y+GG+  FV ++D
Sbjct: 181 SSETFTMVEFDFETLERRLRELAFLNSGIHIILTDQRHADVQSVELHYEGGLIEFVKHID 240

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + KK L+ +PI I   +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 241 QSKKALIDNPIYITNQKDGMSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           RQI  Y E S  +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE
Sbjct: 301 RQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + VN+GLS+WLEEHP EAKI++ KV++A+  R+AAR+AR+LTRRKG LDI SLPGKLADC
Sbjct: 361 NLVNEGLSSWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADC 420

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL
Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGT IG+D F  +K+RYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI 
Sbjct: 481 ITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 540

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY ++RGKS QY+K+E + E++LI+  L E          V++  DLR   +DA  +
Sbjct: 541 QPPLYKVSRGKSFQYIKNEAAFEEFLIDAGLEETTLELAT-GEVLAGADLRKLAEDARML 599

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            +L+   +  +D+  +EQA I+G+F  +  +  E     A  +ANRL+ IA+  E+ W G
Sbjct: 600 RQLLNGLHTRYDRNIVEQAAIAGIFGSKAFTTPEKAQQTADNVANRLDLIADDMERGWTG 659

Query: 656 S-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                  +  +RI RGV+E   L+   I S  ++     +  + E Y     L       
Sbjct: 660 ICAPEGGLYFERILRGVKEVITLDAGLINSADARQIDRIAQNLIEVYSPPPLLHRKDKSE 719

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +I GP SLL++IF  G+KG+++QRYKGLGEMNA QLWETTLNPD R+LL+VKI DA+ AD
Sbjct: 720 RIFGPISLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLNPDARTLLQVKINDATDAD 779

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LFSRLMGDEVEPRR FIQ+N+L    LDI
Sbjct: 780 SLFSRLMGDEVEPRRSFIQDNALSVANLDI 809


>gi|238759587|ref|ZP_04620749.1| DNA gyrase subunit B [Yersinia aldovae ATCC 35236]
 gi|238702246|gb|EEP94801.1| DNA gyrase subunit B [Yersinia aldovae ATCC 35236]
          Length = 804

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/806 (48%), Positives = 538/806 (66%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I+R+G ++E ++  G+   PL + G     TGT V F PS   F +  
Sbjct: 122 VVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGETE-LTGTTVRFWPSFQTFTNNI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L D R+ +       Y+GGI AFV YL+++K P+  
Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDNRNDKE--DHFHYEGGIRAFVEYLNKNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++E Y +  +L             +        + +   + K I    
Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHINAEAPPLVGEHFEKLVAEHYSVQKTIARME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSE-----KSWHGSIN 658
               +  +   +       E   +  V       L   LN   +           +    
Sbjct: 599 RRFPRALLNNLIYQPTLKEEDLSDKEVVMQWIDSLVALLNEKEQHGSSYSSVVRENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    GV   + L+   +     +   +  +++         +     ++ ++ 
Sbjct: 659 LFEPILRIRTHGVDTDYDLDFDFVHGGEYRKICLLGDKLRGLIEEGAFVERGERRVPVSS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P +R +LRV + DA  AD LF+
Sbjct: 719 FEDALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804


>gi|163867345|ref|YP_001608539.1| DNA gyrase subunit B [Bartonella tribocorum CIP 105476]
 gi|161016986|emb|CAK00544.1| DNA gyrase subunit B [Bartonella tribocorum CIP 105476]
          Length = 816

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/806 (60%), Positives = 608/806 (75%), Gaps = 5/806 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +   +   Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 12  TSPTKGDDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 71

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            ++ VTL+ DGSC+V DNGRGIPTD+H  EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 72  TLVNVTLHADGSCSVRDNGRGIPTDIHPTEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WLKL+I+R G I+E+SF +G+ D PL V G    ++GTE+ FLPSS+ 
Sbjct: 132 GVGVSVVNALSVWLKLQIRRNGKIHEISFTHGVADAPLKVVGDCDQESGTEIRFLPSSET 191

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+++TL+ RLREL+FLNS V I L+D+R  + + + + Y+GG+  FV Y+D+ KK
Sbjct: 192 FTMVEFDFETLERRLRELAFLNSGVHILLVDERHADIKAVELHYEGGLIEFVKYIDQSKK 251

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L+ +PI I   +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI 
Sbjct: 252 ALLDTPIYIASEKDGMSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQIN 311

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y E S  +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN
Sbjct: 312 GYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVN 371

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +GLS WLEEHP EAK+++ KV++A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERD
Sbjct: 372 EGLSTWLEEHPNEAKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERD 431

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS  IGTLITAL
Sbjct: 432 PAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSDMIGTLITAL 491

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG+D F  +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +PPL
Sbjct: 492 GTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPL 551

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y ++RGKS QY+K+E + E++LI+  L E          V +  DL     DA    +L+
Sbjct: 552 YKVSRGKSSQYIKNEAAFEEFLIDTGLEETTLELST-GEVRAGADLYQLAKDARVFRQLL 610

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658
              +  +D+  +EQA I G FN E+   QE    +A  + +RLN IA+  E+ W G  I 
Sbjct: 611 NGLHTRYDRNVVEQAAIVGAFNPEAFATQEKAQKIAEAVEHRLNLIADDMEQGWSGQYIE 670

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  +  +RI RGV++   L+   I S  ++     S    + Y   L L       +I G
Sbjct: 671 DGSLCFERILRGVKDVITLDAGLINSADARQIDRISQNFSDLYHPPLLLRRKDKTERIFG 730

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P SLL++IF+ G+KGI++QRYKGLGEMNA QLWETTL+P+ RSLL+VKI DA+ AD LFS
Sbjct: 731 PMSLLESIFTNGKKGITLQRYKGLGEMNAEQLWETTLDPNARSLLQVKINDATDADSLFS 790

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           RLMGDEVEPRR FIQ+N+L    LDI
Sbjct: 791 RLMGDEVEPRRIFIQDNALSVANLDI 816


>gi|261346739|ref|ZP_05974383.1| DNA gyrase, B subunit [Providencia rustigianii DSM 4541]
 gi|282565139|gb|EFB70674.1| DNA gyrase, B subunit [Providencia rustigianii DSM 4541]
          Length = 804

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/806 (50%), Positives = 544/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ D I +
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS  L+L I+R+G ++E  + +G    PL V G   + TGT V F PS D F  + 
Sbjct: 122 VVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGIT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I LIDKR  +       Y GGI+AFV YL R+K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYDGGIKAFVEYLSRNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           S       +D I +++AM+WNDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y+E
Sbjct: 239 SVFYFSTEKDGIGVEVAMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYME 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    KK K S  GDD REG  +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYQKKTKVSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           RGK  QY+KD+E+++DYLI+ +L             +    L   + +     ++I+   
Sbjct: 539 RGKQEQYIKDDEAMDDYLISIALDGAELHLSADAPAMKGEQLEKLVIEYNAAHRIIRRLE 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             +    +   V       ++ ++       AS L  RL    +           +    
Sbjct: 599 RIYPPALLNSLVYQSTLTEDALKDKAQVEEWASTLVKRLEENEQAGSSYSYIIHENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  ++    GV   + L+   +     +      + I         +     +  I  
Sbjct: 659 LFEPTIRIRTHGVDSDYNLDFDFVHGSEYRRITELGDIIGGLIEEGAYIQRGERRQNIDN 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+++QRYKGLGEMN  QLWETT+NPDTR ++RV + DA   D LF+
Sbjct: 719 FEQALDWLSRESRRGLAVQRYKGLGEMNPEQLWETTMNPDTRRMMRVTVKDAIATDQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|127510939|ref|YP_001092136.1| DNA gyrase, B subunit [Shewanella loihica PV-4]
 gi|126636234|gb|ABO21877.1| DNA gyrase subunit B [Shewanella loihica PV-4]
          Length = 805

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/812 (49%), Positives = 542/812 (66%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSEN----SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + + +T++ DGS +V D+GRGIP  +H EEG+SAA+VIMT LHAGGKF+  SYKVSGGL
Sbjct: 57  CNDVIITIHADGSVSVKDDGRGIPVAIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+R+G +YE  +  G  D P+   G A  +TGTE+ F PS++
Sbjct: 117 HGVGVSVVNALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDAT-NTGTEIRFWPSAE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F++D L  R+RELSFLNS V I LID+R  +       Y+GGI AFV YL+ +K
Sbjct: 176 TFSDTLFHFDILAKRVRELSFLNSGVGIRLIDERDNKD--EFFKYEGGISAFVDYLNLNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPVNKEIFHFVQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRN 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY++K   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  
Sbjct: 294 LNSYMDKEGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQT 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E
Sbjct: 354 MGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D +D +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI  G+++I +P
Sbjct: 474 ALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVFIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+ +L +YL N +L             +S   L   +    +++ 
Sbjct: 534 PLYKVKKGKQEQYLKDDPALTEYLTNLALDGGEIHPSQDAPAMSGAPLEKLVYQYREVEA 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKS 652
           +             E+ +     + +   D+             L           +E  
Sbjct: 594 IFDRLEQRFPIMLTERMLYQPGLSNDILADEAKVKQWCDNYVAALTEAESGGFIFSAEAF 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                      V     G+   ++     + S   +     +  +E        +     
Sbjct: 654 LDPERQVYLPKVTVRKHGIDTHYLFSYDFLQSSDYQRMTALAEALEGLIEEGGYVKRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
             +I+     LD + +  ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  
Sbjct: 714 MKEISSFVDALDWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLKVTIEDAIA 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 774 ADQLFTCLMGDQVEPRRDFIESNALNVANLDV 805


>gi|319407911|emb|CBI81565.1| DNA gyrase subunit B [Bartonella schoenbuchensis R1]
          Length = 809

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/810 (60%), Positives = 611/810 (75%), Gaps = 8/810 (0%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MSD      NS Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L
Sbjct: 1   MSDETTSSSNSEYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A ++ VTL+ DGSC+V DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGHATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+L+IKR G I+EMSF  G+ D+PL + G    ++GTE++FLP
Sbjct: 121 GGLHGVGVSVVNALSVWLRLQIKRNGKIHEMSFTRGVADSPLKIVGDCDTESGTEISFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+IF+   F+++TL+ RLREL+FLNS V I L D+R  + + + + Y GG+  FV Y+D
Sbjct: 181 SSEIFTKTKFDFETLERRLRELAFLNSGVHILLTDQRHADVQSVKLHYDGGLIEFVKYID 240

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + KK L+ +PI I   +D +S+++A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 241 QSKKVLIDNPIYITNEKDGMSVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           RQI  Y E S  +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE
Sbjct: 301 RQINGYAESSGITKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + VN+GLSAWLEEHP EAKI++ KV++A+  R+AAR+AR+LTRRKG LDI SLPGKLADC
Sbjct: 361 NLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADC 420

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL
Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGT IG+D F  +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI 
Sbjct: 481 ITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 540

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY ++RGKS QY+K+E + E++LI+  L +          + +  DLR  + DA  +
Sbjct: 541 QPPLYKVSRGKSFQYIKNETAFEEFLIDAGLEDTALELST-GEIRTGADLRQLVQDACLL 599

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWHG 655
            +L+   +  +D+  +EQA I+GVFN E+    E        + +RL+ IA+  E+ W G
Sbjct: 600 RQLLNGLHTRYDRNIVEQAAIAGVFNSEAFATPEKTQKTIDNVVHRLDLIADDMERGWSG 659

Query: 656 -SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            S  +  +  +RI RGV+E  VL+   I S  ++        + E Y     L       
Sbjct: 660 YSTPDGGLCFERILRGVKEAVVLDTGLINSADARQIDRVCQNLTEIYNPPTLLRRKDKSE 719

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            I GP SLL++IF  G+KGI++QRYKGLGEMNA QLWETTL+PD RSLL+VKI DA+ AD
Sbjct: 720 HIFGPMSLLESIFVNGKKGITLQRYKGLGEMNAEQLWETTLDPDARSLLQVKINDATDAD 779

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LFSRLMGDEVEPRR FIQ N+L    LDI
Sbjct: 780 SLFSRLMGDEVEPRRVFIQNNALSVANLDI 809


>gi|84684515|ref|ZP_01012416.1| DNA gyrase subunit B [Maritimibacter alkaliphilus HTCC2654]
 gi|84667494|gb|EAQ13963.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2654]
          Length = 805

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/806 (57%), Positives = 593/806 (73%), Gaps = 4/806 (0%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+D+ QN+  Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MADDAQNNSEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD +TVT++ D S +V DNGRGIP  +H EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADYVTVTVHADSSVSVYDNGRGIPVGMHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R+G  +   F  G     L V G A   TGTEV FL S+
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHIARFERGDTAKHLEVVGDANGKTGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS  ++++ TL+ RLREL+FLNS V+I L D+R  EP E  + Y+GG++ FV YLDRH
Sbjct: 181 DTFSNLEYSFKTLETRLRELAFLNSGVRIILKDERPAEPLETELHYEGGVKEFVKYLDRH 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+++ PI I G RD I I++AM WND Y+E VL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KQPMIEEPIFITGERDGIGIEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  Y   S  +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES 
Sbjct: 301 MNLYANSSGLAKKEKVAFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ LS W EEHP EAK+IV K+++A++ R+AAR+AR+LTR+K   D+ASLPGKLADC E
Sbjct: 361 MNERLSDWFEEHPNEAKMIVGKIIEAALAREAARKARELTRKKATHDVASLPGKLADCQE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K ELF+VEGDSAGGSAKQGRSR NQA+LPLRGKILNVERARFD+ML S+ +GTLIT
Sbjct: 421 KDPSKRELFIVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSETVGTLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FDI KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP +I  G+LYI +P
Sbjct: 481 ALGTGIGRDEFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPEIIDGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RG+S  Y+KD  +LEDYLI Q +   +     +   I+  DL   I+ A    +
Sbjct: 541 PLYKVSRGRSEVYIKDVPALEDYLIQQGIEGAVL-RLKTGEEIAGPDLARIIEGARSFKR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658
           ++  F  ++ +  +EQA ++G F+  +      ++A ++A RL+ +A + EK W+G I  
Sbjct: 600 ILDAFPTHYPRNILEQAALAGAFDPGAADSDLQAVADRVAERLDQVAVEYEKGWNGRITQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G+ + S  ++     S      Y    SL+      +I G
Sbjct: 660 DHGIRLSRILRGVEEIRTLDGAVLRSGEARRLSQVSEETRGYYQDPSSLVRKDRDQEIYG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  I + G KG+++QRYKGLGEMN  QLWETTL+P+ R+LL+VK+ D + ADDLF+
Sbjct: 720 PTDLLQAILAEGEKGLTLQRYKGLGEMNPDQLWETTLDPEARTLLQVKVDDLADADDLFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           +LMGD VEPRREFIQ+N+L    LDI
Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLDI 805


>gi|304414285|ref|ZP_07395653.1| DNA gyrase B subunit [Candidatus Regiella insecticola LSR1]
 gi|304283499|gb|EFL91895.1| DNA gyrase B subunit [Candidatus Regiella insecticola LSR1]
          Length = 804

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/806 (49%), Positives = 542/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNIYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++MD S +V D+GRGIPT LH+EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVG+S
Sbjct: 62  KIHMDNSVSVQDDGRGIPTGLHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGIS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS-SDIFSVQ 185
           VVNALS  L+L I REG I+E +++ G    PL + G     TGT V F PS     +  
Sbjct: 122 VVNALSEKLELVIHREGKIHEQTYMMGEPQTPLRIVGETA-QTGTRVRFWPSLQTFTNNT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS + I L D+R  +       Y+GGI AFV YL+++K P+  
Sbjct: 181 EFQYDPLAKRLRELSFLNSGISIKLHDERDNKE--DHFHYEGGIRAFVEYLNKNKNPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 239 KIFYFSTIKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYNKKTKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLI 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+  LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVNKIIDAARAREAARRAREMTRRKGALDLGGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D +D +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E++E Y I+ +L             ++   L   I +   + K+I    
Sbjct: 539 KGKQEQYIKDDEAMEQYQISLALDGAALHTNAYAPALAGQALEKLITEHYAVQKIIARME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             + +  +   +       E+  ++E        L   LN   ++          +    
Sbjct: 599 RRYPRALLNHLIYQPNLLQETLANKETVQQWIDSLVILLNQNEQQGSHYSAIVRENTERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + L++    GV   + L+   I S   +       ++         +   G ++ +  
Sbjct: 659 LFEPLLRTRTHGVDTDYPLDFDFIHSGEYRKLCQLGEKLRGLLEQDAFVERGGRRLAVDS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + LD +    R+G+++QRYKGLGEMN  QLWETT++P  R +LRV + DA  AD LF+
Sbjct: 719 FEAALDWLVKESRRGLTIQRYKGLGEMNPDQLWETTMDPANRRMLRVMVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|315122037|ref|YP_004062526.1| DNA gyrase subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495439|gb|ADR52038.1| DNA gyrase subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 802

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 695/803 (86%), Positives = 743/803 (92%), Gaps = 1/803 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++NIQNSSY ADSIQILKGLDAVKKRPSMYIGDTD  SGLHHM+YEVLDNAIDE+LEGY
Sbjct: 1   MNNNIQNSSYSADSIQILKGLDAVKKRPSMYIGDTDDGSGLHHMVYEVLDNAIDEALEGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           ADII VTLNMDGSCTVSDNGRGIPTD+HKEEGISA EVIMTRLHAGGKF+Q SYKVSGGL
Sbjct: 61  ADIINVTLNMDGSCTVSDNGRGIPTDIHKEEGISATEVIMTRLHAGGKFDQNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSSWLKLRIKREG IYEMSFINGI+D+PLVV G AG DTGTE+TFLP+SD
Sbjct: 121 HGVGVSVVNALSSWLKLRIKREGKIYEMSFINGIVDSPLVVVGDAGKDTGTEITFLPNSD 180

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS+ DF+ D L+HRLRELSFLNS V ISL+DKR  +PREI +FY+GGIEAFV YLDRHK
Sbjct: 181 IFSIHDFDCDVLKHRLRELSFLNSGVHISLVDKRCSDPREIKLFYEGGIEAFVCYLDRHK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KPL+Q+PIRIQG RD IS+DLAMRWNDGYHENVLCFTNNIPQKDGGTHL+GLRSALTRQI
Sbjct: 241 KPLIQNPIRIQGMRDEISVDLAMRWNDGYHENVLCFTNNIPQKDGGTHLAGLRSALTRQI 300

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           TSYVEKSFGSKKDKRSV+GDDCREGFTSVLSIK+ DPRFSSQTKEKLVSSEVRSVVE  V
Sbjct: 301 TSYVEKSFGSKKDKRSVVGDDCREGFTSVLSIKISDPRFSSQTKEKLVSSEVRSVVEGLV 360

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            DGLS+WLEEHP EAKIIVKKVL+ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER
Sbjct: 361 TDGLSSWLEEHPSEAKIIVKKVLEASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA
Sbjct: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIGQDSFDI KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI NGFLYIIKPP
Sbjct: 481 LGTGIGQDSFDIKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIQNGFLYIIKPP 540

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LYGITRGKSLQYVKDEESLEDYLINQ+LSEEIE        I+ NDLR+FIDDALKIDKL
Sbjct: 541 LYGITRGKSLQYVKDEESLEDYLINQALSEEIE-LSFGSTKITGNDLRSFIDDALKIDKL 599

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           IK FYP++DK FIEQ VISG+FNCE+ Q+IN  LASKLANRLN IAEKSE      +++ 
Sbjct: 600 IKSFYPSYDKIFIEQVVISGIFNCENTQQINEDLASKLANRLNLIAEKSEVWSGSIVDSG 659

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           +ILVKR+ RGVQEQF+L GSSIF+FGS+YKRIFS RIEENYLTI  LICNG+KIKI GPC
Sbjct: 660 NILVKRVVRGVQEQFILNGSSIFAFGSRYKRIFSKRIEENYLTISHLICNGNKIKIVGPC 719

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           SLLDTIFSIGRKG+SMQRYKGLGEMNASQLW+TTLNP+ RSLLRVKITDASQADD+FSRL
Sbjct: 720 SLLDTIFSIGRKGVSMQRYKGLGEMNASQLWDTTLNPEARSLLRVKITDASQADDVFSRL 779

Query: 781 MGDEVEPRREFIQENSLPSALDI 803
           MGDEVEPRREFIQENSL + +DI
Sbjct: 780 MGDEVEPRREFIQENSLSATIDI 802


>gi|77358986|ref|YP_338561.1| DNA gyrase subunit B [Pseudoalteromonas haloplanktis TAC125]
 gi|76873897|emb|CAI85118.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 808

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/815 (51%), Positives = 555/815 (68%), Gaps = 19/815 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+++DGS +V DNGRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CDDIFVTIHLDGSVSVRDNGRGIPTSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+REG ++E ++ +G+ D PL V G A + TGTE+ F PS  
Sbjct: 116 HGVGVSVVNALSEKLKLTIRREGKLHEQTYSHGVPDAPLAVIGDA-DTTGTELRFWPSDQ 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI AFV YL+R+K
Sbjct: 175 TFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIRAFVEYLNRNK 233

Query: 241 KPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            P+ +           D I ++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G RSALTR
Sbjct: 234 TPIHKGVFHFTHTREEDGIVVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSALTR 293

Query: 299 QITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 294 TLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 353

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + +  + +L EHP +AKI+V K++DAS  R+AAR+AR++TRRKG +D+A LPGKLAD
Sbjct: 354 EQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLPGKLAD 413

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 414 CQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 473

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG GIG+D ++  KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G++YI
Sbjct: 474 LITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYI 533

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +GK  +Y+KD+ +L +YL   +L+            I    L   + D   
Sbjct: 534 AQPPLYKVKKGKQERYIKDDPALVEYLTTLALNNATLYTSTDASGIEGEALEKIVHDYQN 593

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRL-----NFIAEKS 649
             K+I+        T + + +       E   D+   ++   +L + L     +    ++
Sbjct: 594 TVKVIERLKRKFPNTVMNRLIYQSELKKEDLSDEAKVIAWTKELVDDLIDRDEDATIFQA 653

Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
                   N    +VK    GV +  VL    I S   +   +    I         +  
Sbjct: 654 ATEHDTERNLYYPVVKIRQHGVDKAHVLHYDFIASRDYQRIAVTGVNIANIITEGAYIQR 713

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 +      L+ + +  ++G+ +QRYKGLGEMN SQLWETT++PD R +L+V + D
Sbjct: 714 GEKTQPVDNFVDALEWLIAESKRGLYIQRYKGLGEMNPSQLWETTMDPDARRMLQVTVED 773

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           A  AD LF+ LMGD+VEPRREFI++N+L    LD+
Sbjct: 774 AVAADQLFATLMGDQVEPRREFIEQNALRVVNLDV 808


>gi|85711018|ref|ZP_01042079.1| DNA gyrase subunit B [Idiomarina baltica OS145]
 gi|85695422|gb|EAQ33359.1| DNA gyrase subunit B [Idiomarina baltica OS145]
          Length = 806

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/813 (49%), Positives = 548/813 (67%), Gaps = 17/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN    +Y + SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSDN----NYGSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              + V ++ DGS +V D+GRGIP DLH+EEG+SAA+VIMT LHAGGKF+  SYKVSGGL
Sbjct: 57  CTGVDVRIHSDGSVSVRDDGRGIPVDLHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+R+G++YE ++  G  +  +   G   + TGTE+ F PS+ 
Sbjct: 117 HGVGVSVVNALSDKLKLTIRRQGHVYEQTYHLGEPETDVQQIGDT-DQTGTELRFWPSAS 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+YD L  RLRELSFLNS V I L D+R  + R+    Y+GGI AFV+YL++ K
Sbjct: 176 IFSDTEFHYDILAKRLRELSFLNSGVAIRLSDER--DDRKDEFKYEGGISAFVTYLNKAK 233

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            P+  +P      R+   IS++++M+WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR
Sbjct: 234 TPIHPNPFHFTSEREEDGISVEVSMQWNDSFQENIYCYTNNIPQRDGGTHLAGFRAALTR 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY+EK   +KK K +  GDD REG T+V+S+K+PDP+FSSQTKEKLVSSEV+S VE 
Sbjct: 294 TLNSYMEKEGFTKKTKTAATGDDAREGLTAVISVKVPDPKFSSQTKEKLVSSEVKSAVEQ 353

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +N+ L+ +L E+P ++K+IV K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC 
Sbjct: 354 AMNERLADFLLENPQDSKLIVNKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 413

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLI
Sbjct: 414 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLI 473

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+G GIG+D +D +K RYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI +
Sbjct: 474 TAMGCGIGRDEYDPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQ 533

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + +GK   Y+KD+ +L  YL + +L             I    L N ++      
Sbjct: 534 PPLYKVKKGKQETYIKDDPALIRYLTSLALDNASLHPTAEAPGIGGEHLENLVNGYQLAQ 593

Query: 599 KLIKDFYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAEKS-----EK 651
           + IK       + F+++   +     +   D+      A +L + L      S       
Sbjct: 594 ETIKRLSRRIPEKFLQRLFYAPRLTDDALRDKAYMEEWAQQLNDDLTAREVDSATYTISL 653

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
                        +    GV   + L    + S   +        I         +    
Sbjct: 654 HEDAERKMWLPTTRIRQHGVDTDYPLNYEFLMSKDYEQIVTVGKEIHALVEEGGYVTRGE 713

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            +  ++     ++ + S  ++G+ +QRYKGLGEMN  QLWETT++P+TR +L+V I DA 
Sbjct: 714 KRQPVSHFVEAVEWLISESKRGLYVQRYKGLGEMNPEQLWETTMDPETRRMLQVTIEDAI 773

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            AD LFS LMGD+VEPRR FI+ N+L    LD+
Sbjct: 774 GADQLFSTLMGDDVEPRRNFIESNALKVANLDV 806


>gi|54292968|ref|YP_125383.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           pneumophila str. Lens]
 gi|53752800|emb|CAH14234.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           pneumophila str. Lens]
          Length = 805

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/811 (50%), Positives = 549/811 (67%), Gaps = 14/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    ++SYD+++I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDESL GY
Sbjct: 1   MS---VDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CKEIFVTIHSDESITVKDDGRGIPVDIHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G +YE  + +G+ ++P+  TG A N TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELS+LNS V I L D+R+ +    T  Y+GGI+AFV +L+++K
Sbjct: 177 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKK--DTFHYEGGIKAFVEHLNKNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+      +   +D I I+LAM+WNDGY E + CFTNNIPQ+DGGTH++G R+ALTR +
Sbjct: 235 TPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRAALTRTL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+  VES V
Sbjct: 295 NNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPAVESCV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +  + +L E+P  AK IV K++DA+  R+AARRAR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 AEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 415 DPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + +D +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ   L+  G++YI +PP
Sbjct: 475 LGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK  QYVKD+E+L DYL   +L             IS   L   +    +++K+
Sbjct: 535 LYKVKRGKQEQYVKDDEALFDYLTQCALDGATFYPAKEVPPISAKSLEELVQHFRRVEKI 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHG--- 655
           IK +   +    +++     + + E         +   +L   L  +  K+E+       
Sbjct: 595 IKRYKRRYPSDILKRVAYMPMLHQEDFNNLPKIENWCRQLHLSLQQVDSKTEQYKVDIQK 654

Query: 656 --SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     +     G++    ++     S   K      +++         +      
Sbjct: 655 LTEGNQYTPKITVYQHGLENDIPMQVEFFLSKDYKEMVDLGHKLSNLIEEGAYIQRGDKS 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + +     +L+ +    +KG ++QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 715 LPVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRMLQVSIEDAVAA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D++F+ LMGD VEPRR+FI+ N+L +  +DI
Sbjct: 775 DEIFTTLMGDNVEPRRDFIESNALDAENIDI 805


>gi|319898232|ref|YP_004158325.1| DNA gyrase subunit B [Bartonella clarridgeiae 73]
 gi|319402196|emb|CBI75727.1| DNA gyrase subunit B [Bartonella clarridgeiae 73]
          Length = 809

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/810 (59%), Positives = 613/810 (75%), Gaps = 8/810 (0%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MSD   +     Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L
Sbjct: 1   MSDETISPMCGDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GYA ++ VTL+ DGSC+V DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGYATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRIKR G I+EMSF +G+ D+ L + G   +++GTE+TFLP
Sbjct: 121 GGLHGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADSALKIVGDCDSESGTEITFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F++ +FN++TL+ RLREL+FLNS + I L D+R  + + + + YKGG+  FV ++D
Sbjct: 181 SSETFTMVEFNFETLERRLRELAFLNSGIHILLTDQRRADVQSVELHYKGGLVEFVKHID 240

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + K+ L+ +PI I   +D IS+D+A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 241 QSKRALIDNPIYIANEKDGISVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           RQI  Y E S  +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE
Sbjct: 301 RQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + VN+GLSAWLEEHP EAKI + KV++A+  R+AAR+AR+LTRRKG LDI SLPGKLADC
Sbjct: 361 NLVNEGLSAWLEEHPNEAKIFISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADC 420

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL
Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGT IG+D F  +K+RYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI 
Sbjct: 481 ITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 540

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY ++RGKS QY+K+E + E++LI+    E          V +  DLR   +DA  +
Sbjct: 541 QPPLYKVSRGKSFQYIKNEAAFEEFLIDAGSEETTLELST-GEVFAGTDLRKLAEDARML 599

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            +L+   +  +++  +EQA I+G+F+ E  +  E     A  +ANRLN IA+  E+ W G
Sbjct: 600 RQLLNGLHTRYNRNIVEQAAIAGIFSSEAFTTPEKAQKTADNVANRLNLIADDMERGWSG 659

Query: 656 -SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                  +  +RI RGV+E  +L+   I S  ++     +  + E Y     L       
Sbjct: 660 IFTPEGGLCFERILRGVKEVIILDAGLINSADARQIDRIAQNLIEVYSPPPLLHHKDKSE 719

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +I GP  LL++IF  G+KG+++QRYKGLGEMNA QLWETTL+PD R+LL+VKI DA+ AD
Sbjct: 720 RIFGPIGLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLDPDARTLLQVKINDATDAD 779

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LFSRLMGDEVEPRR FIQ+N+L    LDI
Sbjct: 780 SLFSRLMGDEVEPRRAFIQDNALSVANLDI 809


>gi|52840260|ref|YP_094059.1| DNA gyrase subunit B [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52627371|gb|AAU26112.1| DNA gyrase subunit B [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 806

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/811 (50%), Positives = 549/811 (67%), Gaps = 14/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    ++SYD+++I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDESL GY
Sbjct: 2   MS---VDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 59  CKEIFVTIHSDESITVKDDGRGIPVDIHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G +YE  + +G+ ++P+  TG A N TGT++ F PS++
Sbjct: 119 HGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELS+LNS V I L D+R+ +    T  Y+GGI+AFV +L+++K
Sbjct: 178 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKK--DTFHYEGGIKAFVEHLNKNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+      +   +D I I+LAM+WNDGY E + CFTNNIPQ+DGGTH++G R+ALTR +
Sbjct: 236 TPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRAALTRTL 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+  VES V
Sbjct: 296 NNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPAVESCV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +  + +L E+P  AK IV K++DA+  R+AARRAR++TRRKG LDIA LPGKLADC E+
Sbjct: 356 AEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 416 DPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + +D +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ   L+  G++YI +PP
Sbjct: 476 LGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK  QYVKD+E+L DYL   +L             IS   L   +    +++K+
Sbjct: 536 LYKVKRGKQEQYVKDDEALFDYLTQCALDGATFYPAKEVPPISAKSLEELVQHFRRVEKI 595

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHG--- 655
           IK +   +    +++     + + E         +   +L   L  +  K+E+       
Sbjct: 596 IKRYKRRYPSDILKRVAYMPMLHQEDFNNLPKIENWCRQLHLSLQQVDSKTEQYKVDTQK 655

Query: 656 --SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     +     G++    ++     S   K      +++         +      
Sbjct: 656 LTEGNQYTPKITVYQHGLENDIPMQVEFFLSKDYKEMVDLGHKLSNLIEEGAYIQRGDKS 715

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + +     +L+ +    +KG ++QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 716 LPVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRMLQVSIEDAVAA 775

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D++F+ LMGD VEPRR+FI+ N+L +  +DI
Sbjct: 776 DEIFTTLMGDNVEPRRDFIETNALDAENIDI 806


>gi|268593491|ref|ZP_06127712.1| DNA gyrase, B subunit [Providencia rettgeri DSM 1131]
 gi|291310913|gb|EFE51366.1| DNA gyrase, B subunit [Providencia rettgeri DSM 1131]
          Length = 804

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/806 (50%), Positives = 545/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ D I +
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSISVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS  L+L I+R+G ++E  + +G    PL V G   + TGT V F PS D F  V 
Sbjct: 122 VVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I L+DKR  +       Y+GGI+AFV YL R+K P+  
Sbjct: 181 EFEYDVLAKRLRELSFLNSGVSIKLVDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           S       +D I ++++M+WNDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y+E
Sbjct: 239 SVFYFSTEKDGIGVEVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYME 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    KK K +  GDD REG  +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGYQKKSKVNATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVETMMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           RGK  QY+KD+++++DYLI+ +L             +   +L   + +     ++I+   
Sbjct: 539 RGKQEQYIKDDDAMDDYLISIALDGAELHLSAEAPAMKGEELEKLVVEYNAAHRIIRRLE 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + +  +   V       +  +  E     A  L  RL    +         + +    
Sbjct: 599 RLYPQALLNSLVYQSTLTEDDLKVSEKVEEWAKTLVKRLEDNEQFGSTYSYTINENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  ++    GV   + L+   +     +      + I         +     +  I+ 
Sbjct: 659 LFEPTIRIRTHGVDTDYNLDFDFVHGSEYRRITHLGDLISGLIEEGAYIKRGERRQDISN 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L  +    R+G+ +QRYKGLGEMN  QLWETT+NP+TR ++RV + DA   D LF+
Sbjct: 719 FEEALAWLTRESRRGLYVQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAIATDLLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|183597169|ref|ZP_02958662.1| hypothetical protein PROSTU_00412 [Providencia stuartii ATCC 25827]
 gi|188023483|gb|EDU61523.1| hypothetical protein PROSTU_00412 [Providencia stuartii ATCC 25827]
          Length = 804

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/806 (50%), Positives = 543/806 (67%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ D I +
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS  L+L I+R+G ++E ++ +G    PL V G   + TGT V F PS D F  V 
Sbjct: 122 VVNALSEKLELTIRRDGKVHEQTYCHGEPQGPLTVVGET-DQTGTRVRFWPSLDTFKGVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I LIDKR  +       Y+GGI+AFV YL R+K P+  
Sbjct: 181 EFEYDVLAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           S       +D I +++AM+WNDG+ ENV C+TNNIPQ+DGGTHL+G R+++TR + +Y++
Sbjct: 239 SVFYFSTEKDGIGVEIAMQWNDGFQENVYCYTNNIPQRDGGTHLAGFRASMTRTLNNYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    KK K S  GDD REG  +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+ +N+   
Sbjct: 299 KEGYQKKAKVSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVETMMNERFV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++++YLI+ +L             +   +L   + +     K+I+   
Sbjct: 539 KGKQEQYIKDDDAMDEYLISIALDGAALHLSADAPAMKGEELEKLVVEYNAAHKIIRRLE 598

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + +  +   V       E     E        L  RL    +           +    
Sbjct: 599 RLYPQALLNSLVYHSTLTEEALKSSEQVEEWTKGLVQRLEDNEQLGSTYSYTIKENRERQ 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  ++    GV   + L+   +     +      + I +       +     +  I  
Sbjct: 659 LFEPTIRIRTHGVDTDYNLDFDFVHGSEYRRITHLGDMIADLIEEGAYIERGERRQNIKN 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L  +    R+G+S+QRYKGLGEMN  QLWETT+NPDTR ++RV + DA   D LF+
Sbjct: 719 FEEALAWLSRESRRGLSVQRYKGLGEMNPEQLWETTMNPDTRRMMRVTVKDAIATDLLFT 778

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804


>gi|261494473|ref|ZP_05990959.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309857|gb|EEY11074.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 810

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/813 (50%), Positives = 550/813 (67%), Gaps = 13/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q +SYD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 61  CKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L+L I+REG+++E  +  G  D PL + G+    TGT V F PS D
Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAIIGNTE-KTGTSVRFWPSLD 179

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF +  +F Y  L  RLRELSFLNS V I LID+R  +       Y+GGI+A+V YL+  
Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE--EHFKYEGGIKAYVEYLNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +  +P  +   +D I +++++ WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 238 KTHIHNTPFYLTTEKDGIGVEISLLWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297

Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y++ S   KK   ++   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR  VE
Sbjct: 298 LKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ LS +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 358 SSMNEALSDYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D +++ KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI 
Sbjct: 478 ITALGTGIGRDDYNLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIA 537

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  +Y++D + +  Y I+ +L        +    +S   L N I     +
Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLYVSEDAPALSGVALENLIAQYNGV 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSE 650
            KLI+     +    + + + S   + E   +Q    + + +    L          +  
Sbjct: 598 QKLIERLSRRYPTLLLNELIYSKPLSVEFAKNQANMTAWSEQFVATLMAKEVGGSFYRIN 657

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             ++      +  +     G+   + L+ + I            N + +       ++  
Sbjct: 658 TLFNEERQIYEPEIIVTTHGMDSTYRLDYNFINGNEYARIVALGNELNDLLSDSAYVVRG 717

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             + +I+     LD +    RKG+++QRYKGLGEMN  QLWETT++P  R +L+V ITDA
Sbjct: 718 ERRQEISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 777

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             AD LFS LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIETNALYAQLDI 810


>gi|157959834|ref|YP_001499868.1| DNA gyrase subunit B [Shewanella pealeana ATCC 700345]
 gi|157844834|gb|ABV85333.1| DNA gyrase, B subunit [Shewanella pealeana ATCC 700345]
          Length = 813

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/810 (48%), Positives = 547/810 (67%), Gaps = 12/810 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +N+  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ +
Sbjct: 7   NNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCN 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + +T++ DGS +V D+GRGIP  +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHG
Sbjct: 67  DVIITIHADGSVSVRDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALSS L++ I+R+G +YE  + +G+ D P+   G A   TGTE+ F PS++ F
Sbjct: 127 VGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEAT-KTGTEIRFWPSTETF 185

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+ +K P
Sbjct: 186 TDVLFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKTP 243

Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           + +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + 
Sbjct: 244 VNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLN 303

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E+   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + 
Sbjct: 304 NYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMG 363

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+D
Sbjct: 364 EQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKD 423

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 424 PGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 483

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG+D ++ +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL
Sbjct: 484 GCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPL 543

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD+ +L +YL  Q+L             +S   L   ++   +++ +I
Sbjct: 544 YKVKKGKQEQYLKDDPALTEYLTTQALDNANIYPSQGAPGMSGQPLERLVNQYREVEAII 603

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-------EKSWH 654
                 +     +  +       E   +     A       + I +++       E    
Sbjct: 604 ARLEQRYPTNITDLMLYHPAITNEMLSDEAQIKAWADVFVADLIDKETGGILYSAEPVLD 663

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                    +     G+   ++       S   +      + I         +       
Sbjct: 664 PERQVYLPKITIRKHGIDTHYMFSYDFFQSTDYQRIVKMGSEINGLVEDGGYVQRGERTK 723

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +T     LD + +  ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD
Sbjct: 724 DVTSFVEALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGAD 783

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LF+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 784 QLFTCLMGDQVEPRRDFIEANALNVANLDV 813


>gi|119471661|ref|ZP_01614046.1| DNA gyrase, subunit B (type II topoisomerase) [Alteromonadales
           bacterium TW-7]
 gi|119445440|gb|EAW26727.1| DNA gyrase, subunit B (type II topoisomerase) [Alteromonadales
           bacterium TW-7]
          Length = 808

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/815 (50%), Positives = 557/815 (68%), Gaps = 19/815 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+++DGS +V DNGRGIP  +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CDDIFVTIHLDGSVSVRDNGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL V G +   TGTE+ F PS++
Sbjct: 116 HGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGDSE-TTGTELRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV Y++R+K
Sbjct: 175 TFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIQAFVEYINRNK 233

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            P+ +        R    IS++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G RSALTR
Sbjct: 234 TPIHKGVFHFTHERVEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSALTR 293

Query: 299 QITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + +++EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 294 TLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 353

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + +  + +L E+P++AKI+V K++DAS  R+AAR+AR++TRRKG +D+A LPGKLAD
Sbjct: 354 EQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLPGKLAD 413

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 414 CQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 473

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG GIG+D ++  KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G++YI
Sbjct: 474 LITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYI 533

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +GK  +Y+KD+ +L +YL + +L+            +    L   + D   
Sbjct: 534 AQPPLYKVKKGKQERYIKDDPALVEYLTSLALNNAALYTSADASALEGEALEKIVHDYQN 593

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRL-----NFIAEKS 649
             K+I+     +  T +E+ +       E   D+   ++   +L + L     +     +
Sbjct: 594 TVKVIERLKRKYPNTVMERLIYQSELTKEDLADEAKVIAWTKELVDDLVDRDEDATIFNA 653

Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
              +    N    +V     GV +  VL    I S   +   +    I         +  
Sbjct: 654 ATKYDAERNLYYPVVNIRQHGVDKSHVLSYDFITSRDYQRIAVTGVNIANIITEGAYIQR 713

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 +      L+ + +  ++GI +QRYKGLGEMN +QLWETT++PD R +L+V I D
Sbjct: 714 GEKTKPVDNFVDALEWLITESKRGIYIQRYKGLGEMNPNQLWETTMDPDARRMLQVTIED 773

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           A  AD LF+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 774 AVGADQLFATLMGDQVEPRRDFIETNALRVVNLDV 808


>gi|294675561|ref|YP_003576176.1| DNA gyrase subunit B [Rhodobacter capsulatus SB 1003]
 gi|294474381|gb|ADE83769.1| DNA gyrase, B subunit [Rhodobacter capsulatus SB 1003]
          Length = 816

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/816 (54%), Positives = 581/816 (71%), Gaps = 15/816 (1%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++  +N   Y A+SI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MTETPKNKAEYGAESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-----KSY 114
           +A+ + V ++ D S +V DNGRGIP D+H EEG+SAAEVIMT+LHAGGKFN       +Y
Sbjct: 61  HANYVAVKIHADSSVSVRDNGRGIPVDIHPEEGVSAAEVIMTQLHAGGKFNNTDEGGNAY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS WL+L++ R   +Y   F  G     +   G A  + GTEV 
Sbjct: 121 KVSGGLHGVGVSVVNALSDWLELKVWRNDKVYFARFEKGDCVVHVHEIGEAPGEKGTEVR 180

Query: 175 FLPSSDI------FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           F+ S+        FS  D+ + TL+ RLREL+FLNS V+I L D+R  EP    + Y+GG
Sbjct: 181 FMASAKTTDPEGTFSNLDYVFKTLETRLRELAFLNSGVRIILEDERPAEPLRSELHYEGG 240

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +  FV YLDR K  +M  PI + G    I +++AM WND YHE VL FTNNIPQ+DGGTH
Sbjct: 241 VREFVKYLDRSKTAVMPDPIYMVGEVRGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTH 300

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR IT Y + S  +K++K    GDD REG T VLS+K+PDP+FSSQTK+KLV
Sbjct: 301 LAGFRGALTRTITKYAQDSGIAKREKIDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLV 360

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ VN+ L+ W EEHP EAK IV K+++A++ R+AAR+AR+LTRRK  +D+A
Sbjct: 361 SSEVRPAVENLVNEKLAEWFEEHPTEAKGIVGKIIEAALAREAARKARELTRRKTAMDVA 420

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC E+DP  SE+FLVEGDSAGGSAKQGR R+NQA+LPLRGKILNVERARFD+M
Sbjct: 421 SLPGKLADCQEKDPALSEVFLVEGDSAGGSAKQGRERKNQAVLPLRGKILNVERARFDRM 480

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           LSS +IGTLITALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP L
Sbjct: 481 LSSDQIGTLITALGTGIGRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPEL 540

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I +G+LYI +PPLY + RGKS  Y+KD+ +LEDYL++Q +   I    D   +I   DL 
Sbjct: 541 IEHGYLYIAQPPLYKVARGKSEVYLKDQAALEDYLVHQGVEGAILRLGDGTDII-GADLT 599

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
             +++A ++ ++++ F  ++ +  +EQA I+G             +A +L+ RL+ IA +
Sbjct: 600 RLVEEARQVRRILQAFPTHYPQRILEQAAIAGALLPGRIDADAQGVADELSARLDLIALE 659

Query: 649 SEKSWHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
            E+ W G    +  + + RI RGV+E   L+G  + S  ++    F+  ++E+Y     L
Sbjct: 660 YERGWMGRPTQDHGLRMSRILRGVEEVRTLDGPVLRSGEARRLSQFTTSLQESYRAPARL 719

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           I    +  I GP  LL  I   G KG+++QRYKGLGEMN  QLWETTL+P  R+LL+V++
Sbjct: 720 IRKDREQFIHGPLDLLTAILQEGEKGLTLQRYKGLGEMNPEQLWETTLDPAARTLLQVRV 779

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            D ++A+D+FS+LMGD VEPRREFIQ+N+L    LD
Sbjct: 780 DDVAEAEDIFSKLMGDVVEPRREFIQQNALSVENLD 815


>gi|319404951|emb|CBI78553.1| DNA gyrase subunit B [Bartonella sp. AR 15-3]
          Length = 809

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/810 (60%), Positives = 618/810 (76%), Gaps = 8/810 (0%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MSD   +     Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L
Sbjct: 1   MSDETTSPMCGDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GYA ++ VTL+ DGSC+V DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGYATLVNVTLHADGSCSVHDNGRGIPTDIHPTEGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRIKR+G I+EMSF +G+ D+ L + G+  +++GTE+TFLP
Sbjct: 121 GGLHGVGVSVVNALSVWLRLRIKRDGKIHEMSFTHGVADSALKIIGNCDSESGTEITFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F++ +FN++TL+ RLREL+FLNS + I L D+R  + + + + Y+GG+  FV Y+D
Sbjct: 181 SSETFTMVEFNFETLERRLRELAFLNSGIHILLTDQRRADVQSVELHYEGGLIEFVKYID 240

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + KK L+ +PI I   +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 241 QSKKALIDNPIYITNEKDGMSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           RQI  Y E S  +KK+K S+ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE
Sbjct: 301 RQINGYAESSGIAKKEKVSLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + VN+GLSAWLEEHP EAKI++ KV++A+ VR+AAR+AR+LTRRKG LDI SLPGKLADC
Sbjct: 361 NLVNEGLSAWLEEHPNEAKILISKVVEAAAVREAARKARELTRRKGALDITSLPGKLADC 420

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL
Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGT IG+D F  +K+RYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G+LYI 
Sbjct: 481 ITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGYLYIA 540

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY ++RGK  QY+K+E + E++LI+  L E          + +  DLR   +DA  +
Sbjct: 541 QPPLYKVSRGKFSQYIKNEAAFEEFLIDSGLEETTLELST-GEIFAGTDLRKLAEDARML 599

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            +L+   +  +D+  +EQA I+G+F+ E  +  E    +A  +ANRL+ IA+  E+ W G
Sbjct: 600 RQLLNGLHTRYDRNIVEQAAIAGIFSFEAFTTPEKAQEIADNVANRLDLIADDMERGWKG 659

Query: 656 S-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                  +  +RI RGV+E   L+   I S  ++     +  + E Y     L       
Sbjct: 660 ICTPEGGLYFERILRGVKEIITLDAGLINSSDARQIDRIAQNLIEVYSFPPLLHRKDKSE 719

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +I GP  LL++IF  G+KG+++QRYKGLGEMNA QLWETTL+PD R+LL+VKI DA+ AD
Sbjct: 720 RIFGPIGLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLDPDARTLLQVKINDATDAD 779

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LFSRLMGDEVEPRR FIQ+N+L    LDI
Sbjct: 780 SLFSRLMGDEVEPRRSFIQDNALSVANLDI 809


>gi|167621945|ref|YP_001672239.1| DNA gyrase subunit B [Shewanella halifaxensis HAW-EB4]
 gi|167351967|gb|ABZ74580.1| DNA gyrase, B subunit [Shewanella halifaxensis HAW-EB4]
          Length = 813

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/810 (49%), Positives = 546/810 (67%), Gaps = 12/810 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +N+  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ +
Sbjct: 7   NNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCN 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + +T++ DGS +V D+GRGIP  +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHG
Sbjct: 67  DVIITIHADGSVSVRDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALSS L++ I+R+G +YE  + +G+ D P+   G A   TGTE+ F PS++ F
Sbjct: 127 VGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEAT-KTGTEIRFWPSTETF 185

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+ +K P
Sbjct: 186 TDVLFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKTP 243

Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           + +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + 
Sbjct: 244 VNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLN 303

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E+   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + 
Sbjct: 304 NYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMG 363

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+D
Sbjct: 364 EQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKD 423

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 424 PGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 483

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG+D ++ +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL
Sbjct: 484 GCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPL 543

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD+ +L +YL  Q+L             +S   L   ++   +++ +I
Sbjct: 544 YKVKKGKQEQYLKDDPALTEYLTTQALDNANIYPSQGAPGMSGQPLERLVNQYREVESVI 603

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-------EKSWH 654
                 +     +  +       E   +     A       + I ++S       E    
Sbjct: 604 ARLEQRYPTNITDLMLYHPAITNEMLSDEAQIKAWTDVFVADLIDKESGGILYSAEPVLD 663

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                    +     G+   ++       S   +        I         +       
Sbjct: 664 PERQVYLPKITIRKHGIDTHYMFSYDFFQSTDYQRIVKMGAEINGMVEASGYVQRGERTK 723

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +T     LD + +  ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD
Sbjct: 724 DVTSFVEALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGAD 783

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LF+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 784 QLFTCLMGDQVEPRRDFIEANALNVANLDV 813


>gi|113968350|ref|YP_732143.1| DNA gyrase subunit B [Shewanella sp. MR-4]
 gi|113883034|gb|ABI37086.1| DNA gyrase subunit B [Shewanella sp. MR-4]
          Length = 805

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/808 (48%), Positives = 541/808 (66%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+T+++DGS +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TITIHVDGSVSVRDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG ++E  + +G+ D P+ V G A   TGTE+ F PS + FS 
Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDAT-KTGTEIRFWPSEETFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDGY E++ CFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 238 KDVFHFMQEREDGITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSALTRNLNNY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 298 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL+ 
Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KDE +L  YL  Q+L             +S   L   +    +++ ++  
Sbjct: 538 VKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVAR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656
               +      + +   + N E   D+           + L  +         E      
Sbjct: 598 LEQRYPTQITNRMLYHPMINNEMLADEGKMKEWIDAFIHELVELENSGVLYSGEPVLDPE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     G+   ++       S   +        +E        +       ++
Sbjct: 658 RKVYLPKITIRKHGIDTHYLFSYDFFQSTDYQRIGKLGAALEGLIEVGGYVQRGDRVKEV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD      ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD L
Sbjct: 718 GSFIEALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLDV 805


>gi|114045517|ref|YP_736067.1| DNA gyrase subunit B [Shewanella sp. MR-7]
 gi|113886959|gb|ABI41010.1| DNA gyrase subunit B [Shewanella sp. MR-7]
          Length = 805

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/808 (48%), Positives = 541/808 (66%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+T+++DGS +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TITIHVDGSVSVRDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG ++E  + +G+ D P+ V G A   TGTE+ F PS + FS 
Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDAT-KTGTEIRFWPSEETFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDGY E++ CFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 238 KDVFHFMQEREDGITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSALTRNLNNY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 298 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL+ 
Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KDE +L  YL  Q+L             +S   L   +    +++ ++  
Sbjct: 538 VKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVAR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656
               +      + +   + N E   D+           + L  +         E      
Sbjct: 598 LEQRYPTQITNRMLYHPMINNEMLADEGKMKEWIDAFIHELVELENSGVLYSGEPVLDPE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     G+   ++       S   +        +E        +       ++
Sbjct: 658 RKVYLPKITIRKHGIDTHYLFSYDFFQSTDYQRIGKLGAALEGLIEVGGYVQRGERVKEV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD      ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD L
Sbjct: 718 GSFIEALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLDV 805


>gi|24371611|ref|NP_715653.1| DNA gyrase, B subunit [Shewanella oneidensis MR-1]
 gi|24345361|gb|AAN53098.1|AE015452_11 DNA gyrase, B subunit [Shewanella oneidensis MR-1]
          Length = 805

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/808 (48%), Positives = 541/808 (66%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+T+++DGS +V D+GRGIP  +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R+G ++E  + +G+ D P+   G A   TGTE+ F PS   FS 
Sbjct: 121 VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEQTFSN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 238 KDVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 298 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL+ 
Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KDE +L  YL  Q+L             +S   L   +    +++ ++  
Sbjct: 538 VKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVAR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656
               +      + +   + + +   D+           + L  +         E      
Sbjct: 598 LEQRYPTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVELENSGVLYSGEPVLDPE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     G+   ++       S   +        +E        +       ++
Sbjct: 658 RKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIEVGGYVQRGDRVKEV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD   S  ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD L
Sbjct: 718 GSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805


>gi|240849719|ref|YP_002971107.1| DNA gyrase subunit B [Bartonella grahamii as4aup]
 gi|240266842|gb|ACS50430.1| DNA gyrase subunit B [Bartonella grahamii as4aup]
          Length = 810

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/811 (60%), Positives = 613/811 (75%), Gaps = 9/811 (1%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD I    Q+  Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+
Sbjct: 1   MSDEITSAAQSDDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A ++ VTL+ DGSC+V DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKV
Sbjct: 61  LAGHATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGVSAAEVIMTQLHAGGKFDQNSYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WLKL+I+R G I+E+SF +G+ D PL V G    ++GTE+ FL
Sbjct: 121 SGGLHGVGVSVVNALSVWLKLQIRRNGKIHEISFTHGVADAPLKVIGDCDKESGTEIRFL 180

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PSS+ F++ +F+++TL+ RLREL+FLNS V I L+D+R  + + + + Y+GG+  FV Y+
Sbjct: 181 PSSETFTMVEFDFETLERRLRELAFLNSGVYILLVDERHADTKSVELHYEGGLTEFVKYI 240

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           D+ KK L+ +PI I   +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL G RSAL
Sbjct: 241 DQSKKALLDNPIYIASEKDGMSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TRQI  Y E S  +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +V
Sbjct: 301 TRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ VN+GLS WLEEHP EAK+++ KV++A+  R+AAR+AR+LTRRKG LDI SLPGKLAD
Sbjct: 361 ENLVNEGLSVWLEEHPHEAKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS  IGT
Sbjct: 421 CQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSDMIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALGT IG+D F  +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI
Sbjct: 481 LITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYI 540

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY ++RGKS QY+K+E + E++LI+  L E          V +  DL     DA  
Sbjct: 541 AQPPLYKVSRGKSSQYIKNEAAFEEFLIDTGLEETTLELST-GEVRAGADLYQLAKDARI 599

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWH 654
           + +L+   +  +D+  +EQA I G FN E    QE    +A  +A+RLN IA+  E+ W 
Sbjct: 600 LRQLLDGLHTRYDRNIVEQAAIVGAFNLEVFATQEKAQKIADTIAHRLNLIADDMEQGWS 659

Query: 655 GSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           G    + ++  +RI RGV++   L+   I S  ++     S    + Y   + L      
Sbjct: 660 GQYTADGNLCFERILRGVKDVVTLDVGLINSTDARQIDRISQNFIDIYHPPVLLRRKDKT 719

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            +I GP SLL++IF+ G+KGI++QRYKGLGEMNA QLWETTL+P+ RSLL+VKI DA+ A
Sbjct: 720 ERIFGPMSLLESIFTNGKKGITLQRYKGLGEMNAEQLWETTLDPNARSLLQVKINDATDA 779

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D LFSRLMGDEVEPRR FIQ+N+L    LDI
Sbjct: 780 DSLFSRLMGDEVEPRRIFIQDNALSVANLDI 810


>gi|219870586|ref|YP_002474961.1| DNA gyrase subunit B [Haemophilus parasuis SH0165]
 gi|219690790|gb|ACL32013.1| DNA gyrase subunit B [Haemophilus parasuis SH0165]
          Length = 810

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/813 (50%), Positives = 541/813 (66%), Gaps = 13/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q +SYD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEQNQPNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 61  CNDIVVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L+L I+REG+++E  +  G  D PL V G     TGT V F PS D
Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGDPDAPLAVIGETE-KTGTTVRFWPSYD 179

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF +  +F Y  L  RLRELSFLNS V I L+D+R+ +       Y+GGI A+V YL+  
Sbjct: 180 IFKNKTEFEYAILSKRLRELSFLNSGVSIRLVDERNDKE--EHFKYEGGIRAYVEYLNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +  +P  +   +D I I+++M+WND ++ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 238 KNVIHPTPFYLSTEKDGIGIEISMQWNDSFNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297

Query: 300 ITSYVE--KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y+E       +  K    GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR+ +E
Sbjct: 298 LKNYMETGAKLKKEDAKIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRNPLE 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L  +L E+P +A+ IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 358 SSMNEALQEYLLENPNDAQNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALG GIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI 
Sbjct: 478 ITALGAGIGRDEYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIA 537

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  +Y++D   +E Y +  +L        D    ++   L   I +   +
Sbjct: 538 QPPLYKVKKGKQEKYIQDNTEMEQYELALALDGASLYVSDKAPALNGLALEKLIAEYNDV 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKS-----E 650
            KL +     +    + + +       E  +      +  +K+   L            E
Sbjct: 598 QKLFERLARRYPTALLNELIYQPALTTEFVKNETEVTAWNNKIVEILTAKETSGSTYVAE 657

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             ++   +  +  V     G+   + L+ + I S           ++ +       +   
Sbjct: 658 VFYNAERHIYEPQVIVTTHGISTTYCLDFNFITSNEYTRITKLGEQVSDLLEPTAYVQRG 717

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             +  I      +D +    RKG+++QRYKGLGEMN  QLWETT++P  R +L+V ITDA
Sbjct: 718 ERQQSIESVAEAIDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVTITDA 777

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             AD LF+ LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 778 IAADKLFTTLMGDEVEPRRDFIENNALYANLDI 810


>gi|167856132|ref|ZP_02478872.1| DNA gyrase subunit B [Haemophilus parasuis 29755]
 gi|167852728|gb|EDS24002.1| DNA gyrase subunit B [Haemophilus parasuis 29755]
          Length = 810

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/813 (50%), Positives = 542/813 (66%), Gaps = 13/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q +SYD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEQNQPNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 61  CNDIVVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L+L I+REG+++E  +  G  D PL V G     TGT V F PS D
Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGDPDAPLAVIGETE-KTGTTVRFWPSYD 179

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF +  +F Y  L  RLRELSFLNS V I L+D+R+ +       Y+GGI A+V YL+  
Sbjct: 180 IFKNKTEFEYAILSKRLRELSFLNSGVSIRLVDERNDKE--EHFKYEGGIRAYVEYLNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +  +P  +   +D+I I+++M+WND ++ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 238 KNVIHPTPFYLSTEKDDIGIEISMQWNDSFNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297

Query: 300 ITSYVE--KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y+E       +  K    GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR+ +E
Sbjct: 298 LKNYMETGAKLKKEDAKIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRNPLE 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L  +L E+P +A+ IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 358 SSMNEALQEYLLENPNDAQNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALG GIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI 
Sbjct: 478 ITALGAGIGRDEYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIA 537

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  +Y++D   +E Y +  +L        D    ++   L   I +   +
Sbjct: 538 QPPLYKVKKGKQEKYIQDNTEMEQYELALALDGASLYVSDKAPALNGLALEKLIAEYNDV 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKS-----E 650
            KL +     +    + + +       E  +      +  +K+   L            E
Sbjct: 598 QKLFERLARRYPTALLNELIYQPALTTEFVKNETEVTAWNNKIVEILTAKETSGSTYVAE 657

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             ++   +  +  V     G+   + L+ + I S           ++ +       +   
Sbjct: 658 VFYNAERHIYEPQVIVTTHGISTTYCLDFNFITSNEYTRITKLGEQVSDLLEPTAYVQRG 717

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             +  I      +D +    RKG+++QRYKGLGEMN  QLWETT++P  R +L+V ITDA
Sbjct: 718 ERQQSIESVAEAIDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVTITDA 777

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             AD LF+ LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 778 IAADKLFTTLMGDEVEPRRDFIENNALYANLDI 810


>gi|212632928|ref|YP_002309453.1| DNA gyrase subunit B [Shewanella piezotolerans WP3]
 gi|212554412|gb|ACJ26866.1| DNA gyrase, B subunit [Shewanella piezotolerans WP3]
          Length = 805

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/808 (49%), Positives = 537/808 (66%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+T++ DGS +V+D+GRGIP ++H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TITIHADGSVSVTDDGRGIPVEIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R+G +YE  +  G  + P+   G A   TGT + F PS + FS 
Sbjct: 121 VSVVNALSHKLQLTIRRDGKVYEQFYTMGEPNEPIKPVGEAT-STGTVIRFWPSEETFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+ +K P+ 
Sbjct: 180 VLFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y
Sbjct: 238 KEVFHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + 
Sbjct: 298 MEREGFNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQ 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D +D +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPLY 
Sbjct: 478 GIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KD+ +L +YL  Q+L             +S   L   ++   +++ +I+ 
Sbjct: 538 VKKGKQEQYLKDDPALTEYLTTQALDNANVYPAQGAPGMSGLPLERLVNQYREVEAIIER 597

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINV-------SLASKLANRLNFIAEKSEKSWHGS 656
               +     +  +       E   +           +A+        I   +E      
Sbjct: 598 LEQRYPTNITDLMLYHPALTNEMLSDEAQVKVWSDTFVAALAEKETGGILYSAEPVLDPE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     G+   F+       S            I         +        +
Sbjct: 658 RQVYLPKITIRKHGIDTHFLFTYDFFQSNDYATIVNLGAEINGLIEDTGYVQRGERTKDV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +     LD + S  ++G  +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD L
Sbjct: 718 SSFVEALDWLMSESKRGQYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 778 FTCLMGDQVEPRRDFIESNALNVANLDV 805


>gi|332991512|gb|AEF01567.1| DNA gyrase subunit B [Alteromonas sp. SN2]
          Length = 806

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/812 (50%), Positives = 556/812 (68%), Gaps = 15/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEQ---NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ DGS +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CSEIVVQIHTDGSVSVYDDGRGIPTAVHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS LKLRI+REG  +E  + +G+   PL V G   + TGT V F PSSD
Sbjct: 118 HGVGVSVVNALSSKLKLRIRREGKTHEQEYQHGVPQAPLAVIGET-DKTGTSVRFWPSSD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   F+YD L  RLRELSFLNS + I L D+R  +       Y+GGI+AFV YL++ K
Sbjct: 177 TFTNTLFHYDILAKRLRELSFLNSGISIRLKDERDGKE--DHFMYEGGIKAFVEYLNQKK 234

Query: 241 KPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ Q          D IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 235 TPVHQKVFHFTHEQEDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRT 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+EK   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES 
Sbjct: 295 LNNYMEKEGMNKKAKTNTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESA 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ L+ +L E+P E++II  K++DA+  RDAAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 355 MNEKLAEFLLENPAESRIIAGKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++  KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI +P
Sbjct: 475 ALGCGIGRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+++L  YL + ++        D    IS   L   +      +K
Sbjct: 535 PLYKVKKGKQEQYLKDDDALTAYLTSIAIDGSSLHTSDDDPGISGVALEQLVTLYQSAEK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQE------INVSLASKLANRLNFIAE-KSEKS 652
           +I         + + + + +   N E  ++      +     ++L  R N  A  + E  
Sbjct: 595 MITRMKRLMPSSILYRMIYTPTLNLEDLKDESTLANVAEHFVAQLTERENDGATYRYEIR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
               ++   I +     G+  ++V+    I S   +  +  +  I +       +     
Sbjct: 655 RDIELSEFYITIIMRMHGIDYEYVIGHDFIESTEYQRLKELNLAINDMMSANAFIQRGDR 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K+ +      LD + S  ++G  +QRYKGLGEMN SQLWETT++P+ R +L+VKI DA  
Sbjct: 715 KMPVESFKEALDWLMSEAKRGQYIQRYKGLGEMNPSQLWETTMDPEGRRMLQVKIEDAIA 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            D LF+ LMGD+VEPRR FI+ N+L    LD+
Sbjct: 775 CDQLFTTLMGDQVEPRRNFIEANALRVENLDV 806


>gi|56459116|ref|YP_154397.1| DNA gyrase subunit B [Idiomarina loihiensis L2TR]
 gi|56178126|gb|AAV80848.1| DNA gyrase subunit B [Idiomarina loihiensis L2TR]
          Length = 805

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/808 (49%), Positives = 548/808 (67%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++ ++Y + SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MEENNYGSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ DGS +V D+GRGIP D+H+EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  MVTIHSDGSVSVKDDGRGIPVDIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS  L+L I+R+G +YE ++  G  D+ +   G   + TGTE+ F PS + F+ 
Sbjct: 121 ISVVNALSEKLQLTIRRQGQVYEQTYHMGEPDSDVKPVGDT-DTTGTELRFWPSHETFTD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L D+R  + RE    Y+GGI AFV+YL+++K P+ 
Sbjct: 180 TEFHYDILAKRLRELSFLNSGVGIRLRDER--DDREDLFKYEGGIAAFVNYLNKNKTPIH 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I ++++M+WND + EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+
Sbjct: 238 EKAFYFTTQREDGIGVEVSMQWNDSFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSH 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +EK   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ 
Sbjct: 298 MEKEGYNKKSKTSATGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMNEQ 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P EAK+I+ K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP 
Sbjct: 358 LADYLLENPGEAKLIINKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA+G 
Sbjct: 418 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSVEVGTLITAMGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI +PPLY 
Sbjct: 478 GIGRDEYNPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK   Y+KD+ +L  YL + +L        ++   IS   L N ++      + IK 
Sbjct: 538 VKKGKQEVYIKDDPALIRYLTSLALDNASLHVNETAPGISGEKLENLVNGYQMAQENIKR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRL-----NFIAEKSEKSWHGS 656
                 + F+++   +     E  ++ +        L + L     N             
Sbjct: 598 LSRRMPERFLQRLFYAPRLTDERLKDKDYMEKWVKTLNDDLTAREINSATYTVSLHEDTE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                        GV   + L    + S   +        I+        ++    K  +
Sbjct: 658 RKMWLPSTTIRQHGVDTDYPLNYEFLMSKDYEQIVTLGEEIDSLVEPDGYVLRGEKKQPV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           T     ++ +    ++G+ +QRYKGLGEMN  QLWETT++PDTR +L+V I DA  AD L
Sbjct: 718 THFVEAVEWLIGESKRGLYVQRYKGLGEMNPDQLWETTMDPDTRRMLQVTIEDAIGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 778 FTTLMGDEVEPRRAFIESNALKVANLDV 805


>gi|120552949|ref|YP_957300.1| DNA gyrase subunit B [Marinobacter aquaeolei VT8]
 gi|120322798|gb|ABM17113.1| DNA gyrase subunit B [Marinobacter aquaeolei VT8]
          Length = 804

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/807 (49%), Positives = 532/807 (65%), Gaps = 11/807 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S+Y++ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++E++DN+IDE+L GY   I
Sbjct: 1   MSESNYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGYCSEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + ++ D S TV DNGRGIP DLH+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  GIIIHPDESITVKDNGRGIPVDLHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALSS L L I+R+G +YE S+ +G+ + PL   G   + +GT+V F+PS + F+ 
Sbjct: 121 VSVVNALSSSLTLTIRRDGKVYEQSYTHGVPNAPLGEVGET-DASGTKVHFIPSPETFTH 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD L  RLREL+FLNS V+I L D+RS +       Y+GG+ AFV +L+ +K  + 
Sbjct: 180 IQFHYDILAKRLRELAFLNSGVRIRLTDERSGKE--EIFEYEGGLRAFVEHLNTNKTAIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +     +   D I++++AM+WND + EN+ CFTNNIPQ+DGGTHL+G R+ALTR + +Y+
Sbjct: 238 RVFHFNREREDGIAVEVAMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRAALTRSLNNYI 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 298 DHEGLGKKAKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L+E P EAK IV K+++A+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 358 AEYLQEQPNEAKQIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPAL 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG G
Sbjct: 418 SELFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ F+ +KLRYH IIIMTDADVDG+HIRTLLLTF FRQM  +I  G ++I  PPLY +
Sbjct: 478 IGREEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFLFRQMREIIERGHVFIAMPPLYKV 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RGK  QY+KDE++ E YL   +L             I  + L   + D   +  +I   
Sbjct: 538 KRGKQEQYLKDEKAKEAYLTQSALEGAQLYVNPEAPAIKDSALETMVKDYQAVMAMIDRL 597

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEK-----SWHGSI 657
              +    ++Q V +     E  +E        ++L   L+       K     +     
Sbjct: 598 SRAYPAKVLQQMVYNSTLKPEHLKEEAEVARWVARLGEGLDLDTRTGTKYTFSVTRDEER 657

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
                 V     G+  + V       S            +E        +     K  + 
Sbjct: 658 GLYLPKVTIFVHGIPHEHVFSHDFFESSSYGAIARLGETLEGLIEDGAYIQRGERKQSVL 717

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +    ++G+++QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD +F
Sbjct: 718 SFEGALEWLMKEAQRGLNIQRYKGLGEMNPDQLWETTMDPETRRMMKVTIEDAIAADQIF 777

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMGD+VEPRR+FIQ N+L    LDI
Sbjct: 778 TTLMGDDVEPRRDFIQSNALEVTNLDI 804


>gi|114561192|ref|YP_748705.1| DNA gyrase, B subunit [Shewanella frigidimarina NCIMB 400]
 gi|114332485|gb|ABI69867.1| DNA gyrase subunit B [Shewanella frigidimarina NCIMB 400]
          Length = 805

 Score =  932 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/812 (49%), Positives = 547/812 (67%), Gaps = 20/812 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T++++ DGS +V D+GRGIP  +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TISIHSDGSVSVKDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R G +YE  + +G+ D P+   G A   TGTE+ F PSSD F+ 
Sbjct: 121 VSVVNALSQKLQLTIRRAGKVYEQFYTHGVPDAPIKEIGDA-VKTGTELRFWPSSDTFTD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDGKD--EFFKYEGGISAFVDYLNRNKTPIN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y
Sbjct: 238 KDVFHFSHEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + 
Sbjct: 298 MEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQ 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL+ 
Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIQRGYIYIAQPPLFK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KDE +L +YL  Q+L             +S   L   +    +++++IK 
Sbjct: 538 VKKGKQEQYLKDEPALTEYLTTQALDGTNIYPSPGAFGMSGEPLERLVAQYREVERIIKR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG-------- 655
               +    +++ +       E    +    A        FIA+  E+   G        
Sbjct: 598 LEKRYPTNLLDRMLYHP----EVTAAVLSDEAQMTEWCNGFIADLVERESSGIIFTANVM 653

Query: 656 ---SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                      V     G+   ++       S   +        +E        +     
Sbjct: 654 LDPERKVYTPSVTIRKHGIDTNYLFGYDFFTSSDYQRIAKLGAALEGMIEEGGYVQRGER 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
             ++      LD   S  ++G+ +QRYKGLGEMN  QLWETT++P++R +LRV I DA  
Sbjct: 714 VKEVESFLEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLRVTIEDAVA 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 774 ADQLFTCLMGDQVEPRREFIETNALNVANLDV 805


>gi|117918471|ref|YP_867663.1| DNA gyrase subunit B [Shewanella sp. ANA-3]
 gi|117610803|gb|ABK46257.1| DNA gyrase subunit B [Shewanella sp. ANA-3]
          Length = 805

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/808 (49%), Positives = 543/808 (67%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+T+++DGS +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TITIHVDGSVSVRDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG ++E  + +G+ D P+ V G A   TGTE+ F PS + FS 
Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDAT-KTGTEIRFWPSEETFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        RD+ I++++AM+WNDGY E++ CFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 238 KDVFHFMQERDDGITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSALTRNLNNY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 298 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL+ 
Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KDE +L  YL  Q+L             +S   L   +    +++ ++  
Sbjct: 538 VKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVAR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES------DQEINVSLASKLANRLNF-IAEKSEKSWHGS 656
               +      + +   + N E        +E   +   +L    N  +    E      
Sbjct: 598 LEQRYPTQITNRMLYHPMINNEMLADEGKMKECIDAFIHELVELENSGVLYSGEPVLDPE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     G+   ++       S   +        +E        +       ++
Sbjct: 658 RKVYLPKITIRKHGIDTHYLFSYDFFQSTDYQRIGKLGAALEGLIEVGGYVQRGDRVKEV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD      ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD L
Sbjct: 718 GSFIEALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLDV 805


>gi|322514536|ref|ZP_08067569.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinobacillus ureae
           ATCC 25976]
 gi|322119475|gb|EFX91562.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinobacillus ureae
           ATCC 25976]
          Length = 810

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/813 (50%), Positives = 552/813 (67%), Gaps = 13/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q +SYD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 61  CKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L+L I+REG++YE  +  G  D PL + G   + TGT V F PS D
Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVYEQFYSLGEPDAPLTIIGDT-DKTGTMVRFWPSLD 179

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF +  +F Y  L  RLRELSFLNS V I L+D+R  +       Y+GGI+A+V YL+  
Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE--EHFKYEGGIKAYVEYLNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +  +P  +   +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 238 KTHIHNTPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297

Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y++ S   KK   ++   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR  VE
Sbjct: 298 LKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+  L GKLADC
Sbjct: 358 SSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLLGKLADC 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI 
Sbjct: 478 ITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIA 537

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  +Y++D + +  Y I+ +L        +    +S   L + I     +
Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVIEGAPALSGVALESLISQYNGV 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAE-----KSE 650
            KL       +    + + + S   + E  ++     +   +   +L          +SE
Sbjct: 598 QKLFDRLSRRYPVALLNELIYSPALSAEFAKDQAKVTAWNKQFVAKLMEKETGGSFYRSE 657

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             ++      +  +     G+   + L+ + I S          N++ +       ++  
Sbjct: 658 VFFNTERQVYEPEIVVTTHGMDTTYRLDFNFISSNEYAKITALGNQLNDLLSPSAYVMRG 717

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             + +++     LD +    RKG+++QRYKGLGEMN  QLWETT++P  R +L+V ITDA
Sbjct: 718 ERRQEVSSFAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 777

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             AD LFS LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIESNALYAQLDI 810


>gi|158422633|ref|YP_001523925.1| DNA gyrase B subunit [Azorhizobium caulinodans ORS 571]
 gi|158329522|dbj|BAF87007.1| DNA gyrase B subunit [Azorhizobium caulinodans ORS 571]
          Length = 808

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/809 (57%), Positives = 597/809 (73%), Gaps = 7/809 (0%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ +       Y A SIQ+LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L
Sbjct: 1   MAEPMPAASPEEYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  +TVTLN DGS TV+D+GRGIPT +H+EEG+SAAEVIMT+LHAGGKFNQ SYKVS
Sbjct: 61  AGHAKEVTVTLNADGSVTVTDDGRGIPTGIHEEEGVSAAEVIMTQLHAGGKFNQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFL 176
           GGLHGVGVSVVNALS++L L I R+G  + M F +G  + PL V G A     GT+VTFL
Sbjct: 121 GGLHGVGVSVVNALSTYLDLTIWRDGKEHYMRFRHGDAEAPLKVVGDAPAGKRGTKVTFL 180

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + F+  +F+Y TL+HRLREL+FLNS V I+L D R PEP+   + Y+GG+EAFV YL
Sbjct: 181 PSPETFTKIEFDYATLEHRLRELAFLNSGVLITLTDARGPEPKREELHYEGGVEAFVRYL 240

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR K+ L+Q P+ I+  RD I+++ A+ WNDGYHEN+LCFTNNIPQ+D GTH +G  +AL
Sbjct: 241 DRSKQALLQKPVVIRAERDGITVEAALSWNDGYHENILCFTNNIPQRDRGTHFTGFAAAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TRQ+  Y ++S  +KK+K    G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRQVIGYADRSGIAKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES V D LS W EE+P E K +V KV++A+  R+AARRARDLTRRK  LD+ASLPGKLAD
Sbjct: 361 ESLVGDALSTWFEENPNEGKSVVGKVVEAAAAREAARRARDLTRRKNPLDVASLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP KSE+F+VEGDSAGGSAKQGR R  QA+LPLRGKILNVERARFDKMLSS +IGT
Sbjct: 421 CQERDPAKSEIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDKMLSSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALGTGIG+D FDI KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP ++  G +YI
Sbjct: 481 LITALGTGIGRDDFDIAKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEVLERGHIYI 540

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPL+ + RGKS  Y+KDE++LEDYLI   L +       S  V +  DL   +D    
Sbjct: 541 AQPPLFKVARGKSETYIKDEKALEDYLITAGLEDAALH-AASGEVRTGADLAAVVDVTRH 599

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +   + + +P ++++  EQA  +G        D     + A ++A RLN +AE++E++W 
Sbjct: 600 MRGTLLNLHPRYNRSVAEQAAFAGALVPGILDDDATATAAAQRIAARLNILAEETERTWE 659

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
           G+ +++ I + R  RGV E  VL+   I S  ++     + +++  +     L    ++ 
Sbjct: 660 GAADDTGIRLTRSVRGVLETSVLDNGFIASPEARRLDSLARQLDGIFTGPSLLRRKSEEH 719

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            + G   L D I   GRKG+S+QRYKGLGEMN  QLWETTL+ + RSLL+VK+ +   AD
Sbjct: 720 SVFGAVDLFDAITDAGRKGLSLQRYKGLGEMNPEQLWETTLDINARSLLQVKVKEVDAAD 779

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803
           DLF+RLMGD VEPRR+FIQEN+L +++D+
Sbjct: 780 DLFNRLMGDVVEPRRDFIQENALKASVDV 808


>gi|310817257|ref|YP_003965221.1| DNA gyrase, B subunit [Ketogulonicigenium vulgare Y25]
 gi|308755992|gb|ADO43921.1| DNA gyrase, B subunit [Ketogulonicigenium vulgare Y25]
          Length = 816

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/816 (53%), Positives = 573/816 (70%), Gaps = 15/816 (1%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+   Q   Y ADSI++L+GLDAV+KRP MYIGDTD  SGLHHMIYEV+DN IDE+L G
Sbjct: 1   MSEPKPQPGDYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-----KSY 114
           +A  + V ++ D S +V DNGRGIP  +H EEG+SAAEVIMT+LHAGGKFN       +Y
Sbjct: 61  HATSVYVKIHADSSVSVRDNGRGIPVGIHAEEGVSAAEVIMTQLHAGGKFNNTDESGNAY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS WL+LRI R+G+ Y   F +G +   +   G +  + GTEV 
Sbjct: 121 KVSGGLHGVGVSVVNALSEWLELRIWRDGHEYHARFEHGNVVQHVKDLGPSDGERGTEVR 180

Query: 175 F------LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           F        +   FS  +++YD L+ RLREL+FLNS V+I L D+R  +P +  ++Y GG
Sbjct: 181 FLAAVRVAANEGTFSNLEYSYDVLERRLRELAFLNSGVRIVLEDERPAQPLKTELYYDGG 240

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +  FV YLDR K  +M  PI + G R  I +++AM WND YHENVL FTNNIPQ+DGGTH
Sbjct: 241 VREFVKYLDRSKTAIMPEPIFMVGERAGIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTH 300

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTR IT Y + S  +KK+K  + GDD REG T VLS+K+PDP+FSSQTK+KLV
Sbjct: 301 IAGFRAALTRTITKYAQDSGIAKKEKIDLTGDDAREGMTCVLSVKVPDPKFSSQTKDKLV 360

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ V + L+ W EE+P  A++IV K+++A+  R+AAR+AR+LTRRK  LD+ 
Sbjct: 361 SSEVRPAVENLVGEKLAEWFEENPQMARMIVGKIIEAAQAREAARKARELTRRKSALDVN 420

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            + GKL DC+E+DP K+ELF+VEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+M
Sbjct: 421 FMAGKLKDCAEKDPSKTELFIVEGDSAGGSAQMGRDRLTQAILPLRGKILNVERARFDRM 480

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           LSS EIG L+ ALGTGIG+D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP L
Sbjct: 481 LSSAEIGNLVMALGTGIGRDEFNLAKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPQL 540

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  G +YI +PPLY ++RGKS  Y+KD+ + ++YLI Q     +    +    ++  DL 
Sbjct: 541 IEAGHVYIAQPPLYKVSRGKSEVYLKDQAAYDEYLIQQGADATVLKLGNGME-LAGADLL 599

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
             I++A ++ +++  F  ++ +  +EQA I+G F           +A ++A RL+ IA +
Sbjct: 600 RVIEEARQLRRVLDAFPTSYQRHILEQAAIAGAFVPGVVDSDLQGVADRVATRLDLIAAE 659

Query: 649 SEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
            E+ W G I  +  I + RI RGV+E   L+G  + S  S+    F+  ++E Y    +L
Sbjct: 660 YERGWIGRITQDRGIRLARILRGVEEVRTLDGQMLRSGESRRAGSFTQSLQEVYGLPATL 719

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           +       I GP  LL  I S G +G+ +QRYKGLGEMN  QLWETTL+PD R+LL+V++
Sbjct: 720 VRKDRAQLINGPLDLLKAILSEGERGLQLQRYKGLGEMNPEQLWETTLDPDARTLLQVRV 779

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            D ++ADD+F++LMGD VEPRREFIQ N+L    LD
Sbjct: 780 DDMTEADDIFTKLMGDVVEPRREFIQNNALSVANLD 815


>gi|304309656|ref|YP_003809254.1| DNA gyrase (topoisomerase II) B subunit [gamma proteobacterium
           HdN1]
 gi|301795389|emb|CBL43587.1| DNA gyrase (topoisomerase II) B subunit [gamma proteobacterium
           HdN1]
          Length = 807

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/811 (49%), Positives = 541/811 (66%), Gaps = 12/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS       YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSQEEDTKGYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGF 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              ITVT++ D + TV D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 61  CKEITVTIHQDETITVCDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R+G +++  + +G+   PL   G +   TGT+V F PSS+
Sbjct: 121 HGVGVSVVNALSEELVLTIRRKGKVWQQIYRHGVPQEPLAPIGESS-TTGTQVHFKPSSE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+++ L  RLRELSFLNS V+I L D+R+         Y+GG+E FV +L+ +K
Sbjct: 180 TFSNIEFSHEILARRLRELSFLNSGVKILLKDERTD--ATDVFCYEGGLEQFVKFLNLNK 237

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL          +D +S+++A++WNDGY ENV C+TNNIPQ+DGGTHL+G RSA+TR I
Sbjct: 238 TPLN-KVFYFSSEKDGVSVEVALQWNDGYQENVRCYTNNIPQRDGGTHLAGFRSAMTRAI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+++   +KK K S  GDD REG  +++S+K+ DP+FSSQTK+KLVSSEV+  VE+ +
Sbjct: 297 NQYLDQEGITKKHKISASGDDAREGLVAIVSVKVGDPKFSSQTKDKLVSSEVKPAVETLM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + LS +L E P EAKI+ +K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 FEKLSEYLAEQPNEAKIVCQKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ +D +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PP
Sbjct: 477 LGCGIGREEYDPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I +GK  QY+KD+E+L  YL   ++ +           I   +L   +++  +    
Sbjct: 537 LYKIKKGKQEQYLKDDEALSHYLTAAAIDDASLNPGGDLAPILGTELAALLEEYKRATNR 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSIN 658
           +      +    + + +     + +    ++V  +  S +   LN I   SE     ++ 
Sbjct: 597 VARLSRLYPGLLLNELIYRPALDTDDLNSVDVVRNWCSGIETHLNAICPPSEHYEVSAVE 656

Query: 659 --NSDILVKRI---ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                I V +I   A GV   + L      S   +       ++         +      
Sbjct: 657 VPEKGIFVPKIILTAHGVPHHYTLGRDFFISNDYRMFTTLGAKVRNLIQEGAFVKKGEKV 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             ++    +++ +    R+G  +QRYKGLGEMN  QLWETT++P+ R +LRV + DA  A
Sbjct: 717 KTVSSFPEVVEWLMDESRRGHQIQRYKGLGEMNPEQLWETTMDPEMRRMLRVTVEDAIAA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D +F+ LMGD VEPRR+FI+ N+L    LDI
Sbjct: 777 DQIFTTLMGDAVEPRRDFIETNALNVANLDI 807


>gi|325291465|ref|YP_004277329.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
 gi|325059318|gb|ADY63009.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
          Length = 811

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/812 (62%), Positives = 631/812 (77%), Gaps = 10/812 (1%)

Query: 1   MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++        N+ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MTETSSSEVGANTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD++TVTLN DGS TV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHADLVTVTLNADGSVTVTDNGRGIPTDIHSSEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +GTEVTF
Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S D F++ D+++ TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV Y
Sbjct: 181 LASPDTFTMTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIKQEELLYDGGLEAFVRY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+A
Sbjct: 241 LDRAKKPLVDKPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY E S   K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP +AKI+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 361 VESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRKGALDIASLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQEIG
Sbjct: 421 DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQEIG 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGT IG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LY
Sbjct: 481 TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY +TRGKS+QY+KDE++LE+YLI+  + +       S  V    DLR  I DA+
Sbjct: 541 IAQPPLYKVTRGKSVQYLKDEKALEEYLISMGIEDTSL-TLGSGEVRIGADLREVILDAV 599

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSW 653
           ++  LI   +  + ++ +EQA I+G  N E   +        +++A RL+ IAE++E+ W
Sbjct: 600 RMRTLIDGLHSRYSRSIVEQAAIAGALNPELSADAARAQETVAEVARRLDMIAEETERGW 659

Query: 654 HG-SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            G  + +  +  +R+ RGV+E   L+   I S  +++    + R  + Y+T   L     
Sbjct: 660 SGLVLEDGGLRFERMVRGVKEISTLDMGLIGSVDARHIDQLAARTRDIYVTPPVLQRKDG 719

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
            +++ GP +LLD IF+ GRKG+SMQRYKGLGEMNA QLWETTL+ + RSLL+VK+ DA+ 
Sbjct: 720 TMELAGPRALLDAIFAAGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVKVNDATD 779

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LFSRLMGDEVEPRR+FIQEN+L    LDI
Sbjct: 780 ADGLFSRLMGDEVEPRRDFIQENALSVANLDI 811


>gi|257464605|ref|ZP_05628976.1| DNA gyrase subunit B [Actinobacillus minor 202]
 gi|257450265|gb|EEV24308.1| DNA gyrase subunit B [Actinobacillus minor 202]
          Length = 809

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/813 (50%), Positives = 553/813 (68%), Gaps = 14/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q  SYD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEQNQ-QSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CQDIVVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L+L I+REG+++E  +  G  + PL V G+  + TGT V F PS D
Sbjct: 120 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPNAPLTVIGNT-DKTGTMVRFWPSLD 178

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF +  +F Y  L  RLRELSFLNS V I L+D+R  +       Y+GGI+A+V YL+  
Sbjct: 179 IFKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE--EHFKYEGGIKAYVEYLNEG 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +  +P  +   +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 237 KTHIHNTPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRAALTRA 296

Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y++ S   KK   ++   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR  VE
Sbjct: 297 LKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 357 SSMNEALAEYLAENPDDAKNIVSKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 416

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 417 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 476

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG++ ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI 
Sbjct: 477 ITALGTGIGREDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIA 536

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  +Y++D + +  Y I+ +L        +    +S   L + I     +
Sbjct: 537 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVSEDAPALSGVALESLITQYNDV 596

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----- 652
            KL +     +    + + + +   + E  ++     A         +A+++  S     
Sbjct: 597 QKLFERLVRRYPAAVLNELIYTPALSTELVKDQAKVTAWNEQLMTQLMAKETGGSFYRAG 656

Query: 653 --WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             ++      +  +     G+   + L+ + I S          N + +       ++  
Sbjct: 657 VFFNEERQIYEPEIIVTTHGMDTTYRLDFNFITSNEYGRITALGNELNDLLSPSAYVMRG 716

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             +  I+     LD +    RKG+++QRYKGLGEMN  QLWETT++P  R +L+V ITDA
Sbjct: 717 ERRQAISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 776

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             AD LFS LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 777 IAADKLFSTLMGDEVEPRRDFIESNALYAQLDI 809


>gi|157373150|ref|YP_001471750.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
 gi|157315524|gb|ABV34622.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 813

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/810 (49%), Positives = 542/810 (66%), Gaps = 12/810 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +N+  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ +
Sbjct: 7   NNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCN 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + +T++ DGS +V D+GRGIP  +H EEGISAAEVIMT LHAGGKF+  SYKVSGGLHG
Sbjct: 67  DVIITIHADGSVSVKDDGRGIPVAIHPEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L+L I+R+G +YE  + +G  D P+   G A  +TGTE+ F PS+D F
Sbjct: 127 VGVSVVNALSHKLQLTIRRDGKLYEQFYTHGEPDEPIKAIGDAT-NTGTEIRFWPSTDTF 185

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   F++D L  R+RELSFLNS V + L+D+R  + R+    Y GGI AFV YL+ +K P
Sbjct: 186 TDVLFHFDILAKRVRELSFLNSGVGVRLVDER--DNRDEFFKYDGGISAFVDYLNVNKTP 243

Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           + +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + 
Sbjct: 244 VNKEVFHFIQERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLN 303

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E+   +KK K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + 
Sbjct: 304 TYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMG 363

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+D
Sbjct: 364 EQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKD 423

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 424 PALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 483

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG+D +D +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI  GF+YI +PPL
Sbjct: 484 GCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGFVYIAQPPL 543

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD+ +L ++L N +L         +   +S   L   +    +++ + 
Sbjct: 544 YKVKKGKQEQYLKDDPALTEFLTNLALDGGEIHASANAPAMSGAPLEKLVYQYREVEAIF 603

Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWH 654
                 +     E+ +     + +   D+             L            E    
Sbjct: 604 DRLDQRYPLMLTERMLYHPALSNDVLADEAKVQQWCDAYVADLAEKESGGYIFSGEAFLE 663

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                    +     G+   ++     + S   +     +  ++        +       
Sbjct: 664 PERQVYLPKITIRKHGIDTHYLFSYDFLQSSDYERMAKLATALDGLIEEGGYVKRGERLK 723

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +++     LD + +  R+G+ +QRYKGLGEMN  QLWETT++P++R +L V I DA  AD
Sbjct: 724 EVSSFVEALDWLMNDSRRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLVVTIEDAIAAD 783

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LF+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 784 QLFTCLMGDQVEPRREFIESNALNVANLDV 813


>gi|110635929|ref|YP_676137.1| DNA gyrase subunit B [Mesorhizobium sp. BNC1]
 gi|110286913|gb|ABG64972.1| DNA gyrase subunit B [Chelativorans sp. BNC1]
          Length = 815

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 506/808 (62%), Positives = 625/808 (77%), Gaps = 9/808 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N + + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L GYA +
Sbjct: 9   NGEPAEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYASL 68

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           +TV+LN DGSCTV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGV
Sbjct: 69  VTVSLNPDGSCTVTDNGRGIPTDIHAGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 128

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS+WLKL+I+R+G I+EMSF +G+ D PL VTG AG +TGTEVTFLPS + F+
Sbjct: 129 GVSVVNALSTWLKLKIRRKGQIHEMSFSHGVPDAPLAVTGDAGEETGTEVTFLPSPETFT 188

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             DF+Y TL+HRLREL+FLNS V+I L D+R  + +E    Y GGI  FV YLDR KKPL
Sbjct: 189 KTDFDYATLEHRLRELAFLNSGVRILLSDRRHADLKEQQFLYDGGIIEFVKYLDRAKKPL 248

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +  PI I G RD I+++LAM WND YHENVL FTNNIPQ+DGGTH++G R ALTRQ+TSY
Sbjct: 249 IPEPISISGERDGITVELAMWWNDSYHENVLAFTNNIPQRDGGTHMAGFRGALTRQVTSY 308

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            + S  +KK+K S+ GDDCREG ++VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ 
Sbjct: 309 ADVSGLTKKEKVSLTGDDCREGLSAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEA 368

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  WLEEHP EAKI+V KV++A+  R+AAR+AR+LTRRKGVLDI SLPGKLADC ERDP 
Sbjct: 369 LGTWLEEHPAEAKILVGKVVEAAAAREAARKARELTRRKGVLDITSLPGKLADCQERDPA 428

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           KSELF+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS  IGTLITALGT
Sbjct: 429 KSELFIVEGDSAGGSAKSGRSRKNQAILPLRGKILNVERARFDRMLSSDMIGTLITALGT 488

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +PPLY 
Sbjct: 489 GIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYK 548

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           +TRGKS+QY+KDE + E++LI+  L E          V S  DL+  I+DA  +  LI  
Sbjct: 549 VTRGKSVQYIKDEAAFEEFLIDTGLQEAALELST-GEVRSGQDLKQVIEDARAVRSLING 607

Query: 604 FYPNHDKTFIEQ--AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN--- 658
            +  +D+T +EQ     +      +D   +   A+ +A RL+ I+E++E+ W G +N   
Sbjct: 608 LHTRYDRTVVEQAAIAGALNAAVLADPGRSAEAAAYVARRLDMISEETERGWQGRVNPSN 667

Query: 659 --NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                 L +R  RGV++  +L+ + I S  S+    ++ R++E +     L  N     +
Sbjct: 668 EGAGGYLFERTVRGVRDVVILDAALIGSADSRAIDRYTPRLQEVFAMPPVLRRNDKSETV 727

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +GP +LLD +F+ GRKG++MQRYKGLGEMNA QLWETTL+PD RSLL+VK+ DA+ AD L
Sbjct: 728 SGPMALLDAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPDARSLLQVKVPDATDADAL 787

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+RLMGDEVEPRR+FIQEN+L    LD+
Sbjct: 788 FARLMGDEVEPRRDFIQENALSVANLDV 815


>gi|170724374|ref|YP_001758400.1| DNA gyrase subunit B [Shewanella woodyi ATCC 51908]
 gi|169809721|gb|ACA84305.1| DNA gyrase, B subunit [Shewanella woodyi ATCC 51908]
          Length = 805

 Score =  930 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/808 (49%), Positives = 542/808 (67%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + +
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDV 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            +T++ DGS +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  IITIHADGSVSVKDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALSS L+L I+R+G +YE  +  G    P+   G A  +TGTE+ F PSS+ FS 
Sbjct: 121 VSVVNALSSKLQLTIRRDGKLYEQFYNMGEPVEPIKAIGDAT-NTGTEIRFWPSSETFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+ +K P+ 
Sbjct: 180 TLFHFDILAKRVRELSFLNSGVGIRLVDERDNKD--EFFKYEGGISAFVDYLNVNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + SY
Sbjct: 238 KDVFHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNSY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + 
Sbjct: 298 MEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQ 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVVTLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D +D +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPLY 
Sbjct: 478 GIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KD+ +L +YL N +L             +S   L   +    +++ + + 
Sbjct: 538 VKKGKQEQYLKDDPALTEYLTNLALDGGEIHPSADAPAMSGAPLEKLVYQYREVEAIFER 597

Query: 604 FYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNF-----IAEKSEKSWHGS 656
               + K   E+ +     + E  SD+             L       +   +E      
Sbjct: 598 LEQRYPKLLTERMLYHPALSHELLSDEAKVKQWCDTYVADLEDRDTGGVHYSAEAFLDPE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  V     G+   F+     + S   +     +N +E        +       ++
Sbjct: 658 RKVYLPKVTIRKHGIDTNFLFTYDFLNSHDYELMTKLANALEGLIEEGGYVKRGERMKEV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           T     L+ + +  ++G+ +QRYKGLGEMN  QLWETT++P++R +L V I DA  AD L
Sbjct: 718 TTFVEALNWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLVVTIEDAIAADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD VEPRR+FI+ N+L    LD+
Sbjct: 778 FTCLMGDHVEPRRDFIESNALNVANLDV 805


>gi|294138805|ref|YP_003554783.1| DNA gyrase subunit B [Shewanella violacea DSS12]
 gi|23307486|dbj|BAC16536.1| DNA topoisomerase chain B [Shewanella violacea]
 gi|293325274|dbj|BAJ00005.1| DNA gyrase, B subunit [Shewanella violacea DSS12]
          Length = 806

 Score =  930 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/809 (49%), Positives = 540/809 (66%), Gaps = 13/809 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+   +
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCSEV 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            +T++ D S +V D+GRGIP D+H EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  IITIHADNSVSVKDDGRGIPVDIHPEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALS  L+L I+R G +YE  +  G+ D P+   G A   TGTE+ F PS + F +
Sbjct: 121 VSVVNALSEKLQLTIRRNGKLYEQFYTMGVPDAPIKEIGDAT-STGTELRFWPSHETFTT 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  R+RELSFLNS V I LID+R  + R+    Y+GGI AFV YL+ +K  +
Sbjct: 180 NIKFHFDILVKRVRELSFLNSGVGIRLIDER--DNRDEFFQYQGGISAFVDYLNVNKTAV 237

Query: 244 MQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +
Sbjct: 238 NKDVFHFIQERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNA 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y+E+   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + +
Sbjct: 298 YMEREGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGE 357

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +L EHP EA++IV K++DAS  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP
Sbjct: 358 KLGDYLMEHPNEARLIVGKIIDASRAREAARKAREMTRRKGALDLGGLPGKLADCQEKDP 417

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG
Sbjct: 418 ALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 477

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG+D +D +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPLY
Sbjct: 478 CGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLY 537

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + +G+  QY+KDE +L ++L N +L             IS   L   +    +++ +  
Sbjct: 538 KVKKGRQEQYLKDELALTEFLTNLALDGGELHSSADAPAISGAPLEKLVYQYREVETIFD 597

Query: 603 DFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHG 655
                +     E+ +     + E   D+        +    L           ++     
Sbjct: 598 RLNMRYPTLLTERMLYHPALDAEMLADEAKVKQWCDEFVADLTEKESGGVMYSADPVMDP 657

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                   V     G+   ++     + S   +     +  +E   +    +       +
Sbjct: 658 ERKVYLPNVHIRKHGIDTSYLFTYDFLNSSDYERMAKLAAALEGLIVEGGYIKRGERMKE 717

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I+     L+ + +  R+G+ +QRYKGLGEMN  QLWETT++P+TR +L V I DA  AD 
Sbjct: 718 ISTFVEALNWLMNDSRRGLYIQRYKGLGEMNPEQLWETTMDPETRRMLVVTIEDAIGADQ 777

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LF+ LMGD+VEPRR+FI+EN+L    LD+
Sbjct: 778 LFTCLMGDQVEPRRQFIEENALNVANLDV 806


>gi|254429302|ref|ZP_05043009.1| DNA gyrase, B subunit [Alcanivorax sp. DG881]
 gi|196195471|gb|EDX90430.1| DNA gyrase, B subunit [Alcanivorax sp. DG881]
          Length = 805

 Score =  930 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/808 (50%), Positives = 551/808 (68%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MAEKNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D S ++ DNGRGIPT+LH+EEG+SAAEVIMT LHAGGKF+  +YKVSGGLHGVG
Sbjct: 61  KVVIHPDESMSIQDNGRGIPTELHEEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I+R G ++E  + +G+  NPL V G   + +GT V F PS + FS 
Sbjct: 121 VSVVNALSEELKLTIRRNGQVHEQIYHHGVPANPLEVVG-TTDSSGTAVHFRPSPETFSN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+ AFVSYL+ +K  L 
Sbjct: 180 IKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGLSAFVSYLNTNKTALN 237

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY
Sbjct: 238 QVFHFNFEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + D 
Sbjct: 298 MDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDL 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
              +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC ++DP 
Sbjct: 358 FQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQQKDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG 
Sbjct: 418 LSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++I+KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PPLY 
Sbjct: 478 GIGRDEYNIDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK   Y+KD+ ++E+YL   +L +      D    IS   L   I +   + K++  
Sbjct: 538 VKKGKQETYLKDDPAMEEYLTTLALDKTGLYPGDDAPPISGEPLAKLIAEYRGVMKIVDR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE-----KSWHGS 656
                 +  +EQ +     N     D+         L  R++ I + ++           
Sbjct: 598 QSRVFPEEVLEQMIYMPSLNEASLKDEAAMAQWCETLGKRVDAITDATQAFTITAQRDEE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  V+ +A GV  ++ +    + S   +  +     +E        +     +  I
Sbjct: 658 RGLYLPRVQVLAHGVPREYRVTLDFLQSPDYQKIKALGETLEGLLAEDAYIQRGESQRPI 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD +    R+G S QRYKGLGEMNA QLWETT++P++R +L+V I DA  AD +
Sbjct: 718 RHFAEALDWLMVQARRGTSFQRYKGLGEMNADQLWETTMDPESRRMLQVTIEDAIAADQI 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+V+PRR+FI+ N+L    LD+
Sbjct: 778 FTCLMGDDVDPRRQFIESNALQVSNLDV 805


>gi|192360461|ref|YP_001980528.1| DNA gyrase subunit B [Cellvibrio japonicus Ueda107]
 gi|190686626|gb|ACE84304.1| DNA gyrase, B subunit [Cellvibrio japonicus Ueda107]
          Length = 806

 Score =  930 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/813 (50%), Positives = 544/813 (66%), Gaps = 17/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSE---ENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              + VT++ D + +VSDNGRGIP D+H EEG+SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 58  CTEVRVTIHPDETVSVSDNGRGIPVDMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +LKL I+R G I+E  + +G+ D PL V G +   TGTE+ F PS++
Sbjct: 117 HGVGVSVVNALSEYLKLTIRRAGKIHEQIYCHGVPDAPLTVVGDS-VTTGTEIHFKPSAE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F YD L  RLRELSFLNS V+I L D+RS +       Y+GG++AFV +L+++K
Sbjct: 176 TFTNIEFQYDILAKRLRELSFLNSGVRIVLKDERSGKE--EIYQYEGGLKAFVEHLNKNK 233

Query: 241 KPLMQSPIRI-QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + +    +  G  D I +++A++WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TTINKMVHFVASGREDGIGVEVALQWNDSFQENLFCYTNNIPQRDGGTHLAGFRAALTRL 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+EK    K  K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 294 LNTYIEKEGIGKNAKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + +  S++L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 354 MAEHFSSYLLENPNDAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLIT
Sbjct: 414 KDPALSELYLVEGDSAGGSAKQGRARKTQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++  KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM  LI  G +YI +P
Sbjct: 474 ALGCGIGKEDYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I +GK  QY+KDE ++ ++L   +L         +   IS   L   +    K+  
Sbjct: 534 PLYKIAKGKQEQYLKDEAAMTEFLTQAALDGSSLHVNLTAPGISGEALEKLVQQYRKVMA 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
            I+     +    +E+ +       E   DQ        +L  R +  A    + +  S+
Sbjct: 594 TIERLSRLYPADVLEKMIYMPSLRAEHLADQGHIQQWCDQLLARFSLDARDGSQKYIISV 653

Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
                       V+ IA G+   +        S            +E        +    
Sbjct: 654 REDQERHLFLPEVEIIAHGISTHYPFNHDFFASGEYAQIVALGEELETLIEEGAYVQRGE 713

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            K  I      L+ +    RKG ++QRYKGLGEMN  QLWETT+NP+TR +LRV I DA 
Sbjct: 714 RKQTIASFAEGLEWLMKESRKGYNIQRYKGLGEMNPEQLWETTMNPETRRMLRVTIQDAI 773

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            AD +F+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 774 TADQIFTTLMGDQVEPRRDFIETNALAVANLDV 806


>gi|53802866|ref|YP_115417.1| DNA gyrase subunit B [Methylococcus capsulatus str. Bath]
 gi|53756627|gb|AAU90918.1| DNA gyrase, B subunit [Methylococcus capsulatus str. Bath]
          Length = 804

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/810 (50%), Positives = 546/810 (67%), Gaps = 13/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   + + YD+  I+ILKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE++ GY
Sbjct: 1   MT--TKPNEYDSSHIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAMAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TVSD+GRGIP D+H EEG SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 59  CKRICVTVHEDESVTVSDDGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNAYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I R G  Y   + +G    PL   G A + TGT V F PS  
Sbjct: 119 HGVGVSVVNALSERLWLEICRGGRRYRQEYRDGEPLAPLAEVGPA-DTTGTTVRFKPSPQ 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+Y+ L  RLRELSFLNS V+I L DKRS +       ++GGI AFV +L+++K
Sbjct: 178 IFSNIEFHYEILAKRLRELSFLNSGVRIELEDKRSGKN--EVFEFEGGIRAFVEHLNKNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL      +Q  RD + +++AM+WND Y ENV C+TNNIPQ+DGGTHL+G R+ALTR +
Sbjct: 236 TPLFDKVFHLQAERDGVGVEIAMQWNDSYQENVFCYTNNIPQRDGGTHLAGFRAALTRTV 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+E+    KK K + +GDD REG T+VLS+K+PDP+FSSQTKEKLVSSEV+SVVES +
Sbjct: 296 NQYIEEQGLLKKQKVATVGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKSVVESVM 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P  A+ I  KV+DA+  R+AAR+AR++TRRK  LDIA LPGKLADC E+
Sbjct: 356 AEKLNDFLLENPSIARTIANKVVDAARAREAARKAREMTRRKSALDIAGLPGKLADCQEK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SELF+VEGDSAGGSAKQGR R +QAILPL+GKILNVERARFDKMLSS+E+GTLITA
Sbjct: 416 DPALSELFIVEGDSAGGSAKQGRDRRSQAILPLKGKILNVERARFDKMLSSEEVGTLITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI +PP
Sbjct: 476 LGCGIGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVDRGHVYIAQPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +G+   YVKD+  L +YL+  ++ +   +  +    I    L     + L + KL
Sbjct: 536 LYKVKKGRQEHYVKDDAELNEYLLQLAIDKARLVVDEQSPPIQGQGLEKLSHEYLHVRKL 595

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I      +D+ F+E   +    +    ++  +      A     +  +    +  ++ + 
Sbjct: 596 IGRLAHRYDEAFLEALTVLSPLSAAELEDEALRR-EWFAEVERIVNAEGPAHYVVAVRSG 654

Query: 661 D------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
           D      + V R   GV+  F +               F  R+   +    ++  N ++ 
Sbjct: 655 DAPGDFTVQVDRRLHGVERTFEVGAGFFGGNDYAVLSAFGQRVAGLFGDTSTVCFNDERR 714

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +     L D + +  +KG  +QRYKGLGEMN  QLWETTL+ +TR LL+V+I DA  AD
Sbjct: 715 PVRSFKELFDWMLTEAKKGQHIQRYKGLGEMNPEQLWETTLDANTRRLLQVRIEDAIAAD 774

Query: 775 DLFSRLMGDEVEPRREFIQENSL-PSALDI 803
           ++F+ LMGD+VEPRREFI+ N+L  + LD+
Sbjct: 775 EVFTTLMGDQVEPRREFIERNALQVANLDV 804


>gi|217978065|ref|YP_002362212.1| DNA gyrase, B subunit [Methylocella silvestris BL2]
 gi|217503441|gb|ACK50850.1| DNA gyrase, B subunit [Methylocella silvestris BL2]
          Length = 821

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/803 (58%), Positives = 594/803 (73%), Gaps = 10/803 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y ADSI++L+GLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A  +TVTLN
Sbjct: 20  YGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATRVTVTLN 79

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS  V+D+GRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVN
Sbjct: 80  ADGSVAVTDDGRGIPTDIHSEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 139

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-----TGTEVTFLPSSDIFSV 184
           ALSSWLKLRI R+G  + + F +G    PL VTG A         GTEVTF  S + F+ 
Sbjct: 140 ALSSWLKLRIWRDGKEHLIEFAHGDAVTPLKVTGPAPTHDGKPKRGTEVTFQASPETFTK 199

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            D+++ T++HRLREL+FLNS V+I L D R  E R  T++Y GG+EAFV YLDR K PL+
Sbjct: 200 VDYDFATIEHRLRELAFLNSGVRIELTDARGAEVRSETLYYDGGLEAFVRYLDRAKTPLI 259

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             PI I+G R+ I++++A+ WND YHENVL FTNNIPQ+DGGTHL+  R+ALTRQ+T Y 
Sbjct: 260 AKPILIKGEREAITVEVALWWNDSYHENVLPFTNNIPQRDGGTHLAAFRAALTRQLTGYA 319

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+S   K++K  + GDDCREG T VLS+K PDP+FSSQTKEKLVSSEVR  VE  VN+ L
Sbjct: 320 ERSGLLKREKVDLTGDDCREGLTCVLSVKAPDPKFSSQTKEKLVSSEVRPAVEGLVNEML 379

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
            +WLEEHP EA+ +V KV++A   R+AAR+AR+LTRRKG LDI++LPGKLADC ERDP K
Sbjct: 380 GSWLEEHPQEARTVVGKVIEAGQAREAARKARELTRRKGALDISNLPGKLADCQERDPAK 439

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELFLVEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSSQEIGTLITALGTG
Sbjct: 440 SELFLVEGDSAGGSAKQGRNREYQAVLPLRGKILNVERARFDKMLSSQEIGTLITALGTG 499

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D F+++KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQM  LI  G L+I +PPLY +
Sbjct: 500 IGRDDFNVDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHLFIAQPPLYKV 559

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RG S QY+KDE + EDYLI   L   +    D     S  DLR  +++A  + +++   
Sbjct: 560 KRGGSEQYLKDERAREDYLIGNGLEGAVLRLADGVE-RSGADLRAIVEEARTVRQVLSAT 618

Query: 605 YPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
           +  +D+  +EQA I+G       ++     ++A+++A RL+ +A+  E+ W G + N   
Sbjct: 619 HSRYDRAVVEQAAITGALRPIGPEDEAGAEAIAAEIAGRLDALADDMERGWSGRVVNGGY 678

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           +  R+ RGV++   L+   + S  ++     +  + + +      +   D+ + +GP  L
Sbjct: 679 VFSRLVRGVRQAATLDAGLLASSEARRLNEHAASLHDVFARPAVFMRRADQSQASGPGEL 738

Query: 723 LDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L  + + G+KGIS MQRYKGLGEMN  QLWETTL+ D RSLL+VKI +   ADD+F +LM
Sbjct: 739 LSAVMAAGQKGISQMQRYKGLGEMNPEQLWETTLDRDARSLLQVKIKEGDDADDIFVKLM 798

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           GD VEPRREFIQEN+L    LD+
Sbjct: 799 GDVVEPRREFIQENALNVSNLDV 821


>gi|323155375|gb|EFZ41558.1| DNA gyrase, B subunit [Escherichia coli EPECa14]
          Length = 790

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/792 (50%), Positives = 539/792 (68%), Gaps = 11/792 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +     K+I    
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
             + K  +++ +           D++      + L + LN   +     K +   +   N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   I     +       ++         +     +  +  
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 779 RLMGDEVEPRRE 790
            LMGD VEPRR 
Sbjct: 779 TLMGDAVEPRRA 790


>gi|182677812|ref|YP_001831958.1| DNA gyrase, B subunit [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633695|gb|ACB94469.1| DNA gyrase, B subunit [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 817

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/809 (58%), Positives = 597/809 (73%), Gaps = 10/809 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +  +Y ADSI++L+GLDAV+KRP MYIGDTD  SGLHHMIYEV+DNAIDE+L G+A  
Sbjct: 10  TNEEQAYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEALAGHATR 69

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           +TVTLN DGS TV+D+GRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGV
Sbjct: 70  VTVTLNADGSVTVTDDGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 129

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-----NDTGTEVTFLPS 178
           GVSVVNALS+WLKLRI R+G  +E++F +G+  + L V G A         GTEVTFLPS
Sbjct: 130 GVSVVNALSTWLKLRIWRDGKEHEITFEHGVAKSSLAVVGPAPEIDGKPKRGTEVTFLPS 189

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + FS+ DF Y T++HRLREL+FLNS V+I L D R  E +   + Y+GG+EAFV +LDR
Sbjct: 190 PETFSMVDFTYATIEHRLRELAFLNSGVRILLTDARGAEVKVEELHYEGGLEAFVRFLDR 249

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL+  PI I G RD I+++ A+ WND YHE+VL FTNNIPQ+DGGTHL+GLRSALTR
Sbjct: 250 AKSPLLDQPILIAGERDGITVEAALWWNDSYHEHVLAFTNNIPQRDGGTHLTGLRSALTR 309

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
           Q+T Y ++S   K++K  +  DDCREG T VLS+K+PDP+FSSQTKEKLVSSEVR VVES
Sbjct: 310 QVTGYADRSGLIKREKVDLAPDDCREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPVVES 369

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            VND L  W EEHP EA+ I+ KV++A+  R+AAR+AR+LTRRKG LD+A+LPGKLADC 
Sbjct: 370 LVNDKLGQWFEEHPQEARSIIGKVVEAAQAREAARKARELTRRKGALDVANLPGKLADCQ 429

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ERDP K+ELFLVEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSSQEIGTLI
Sbjct: 430 ERDPAKAELFLVEGDSAGGSAKQGRNREYQAVLPLRGKILNVERARFDKMLSSQEIGTLI 489

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGIG + F+ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQM  LI  G LYI +
Sbjct: 490 TALGTGIGHEDFNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMRPLIERGHLYIAQ 549

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + RG S QY+KDE + EDYLIN  L   +    +        DLR  +++A    
Sbjct: 550 PPLYKVKRGSSEQYLKDERAREDYLINSGLDHAVLRLANGVE-RGGADLRAIVENAQLAR 608

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGS 656
           +++   +  +++  +EQ  I+G     +  +     +LA ++A RL+ +AE  E+ W G+
Sbjct: 609 QILSGLHSRYNRRIVEQTAIAGALQPITPDQETEAPALAVEVAARLDELAEDMERGWTGT 668

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
           + N   +  R  RGV++  +L+   + S  ++     +    + +      +   D+  +
Sbjct: 669 VENGGYIFARTLRGVRQAAILDAGLLASAEARRLNDLAPVFHDIFARPALFLRQNDEKPV 728

Query: 717 TGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +GP  LLD + + G+KGIS MQRYKGLGEMN  QLWETTL+ + RSLL+V+I +   ADD
Sbjct: 729 SGPSDLLDAVMAAGQKGISQMQRYKGLGEMNPDQLWETTLDREARSLLQVRIKEGDDADD 788

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +F +LMGD VEPRREFIQ+N+L    LD+
Sbjct: 789 IFVKLMGDIVEPRREFIQDNALNVHNLDV 817


>gi|170743430|ref|YP_001772085.1| DNA gyrase, B subunit [Methylobacterium sp. 4-46]
 gi|168197704|gb|ACA19651.1| DNA gyrase, B subunit [Methylobacterium sp. 4-46]
          Length = 808

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/809 (58%), Positives = 609/809 (75%), Gaps = 7/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++   ++   +Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L
Sbjct: 1   MAEPARDLTPDTYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A ++TVTLN DGSCTVSDNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGHATLVTVTLNPDGSCTVSDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS+WL+LRI R G  + M F +G    PL V G AG+  GTEVTFLP
Sbjct: 121 GGLHGVGVSVVNALSTWLRLRIWRGGQEHAMEFRHGDAVAPLAVVGPAGDRRGTEVTFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ FS+ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+EAFV YLD
Sbjct: 181 STETFSMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELVYEGGVEAFVRYLD 240

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R K PL+  P+ ++  RD IS+++A+ WND YHE VL FTNNIPQ+DGGTH++G R+ALT
Sbjct: 241 RTKTPLVAKPVVVRAERDGISVEVALWWNDSYHETVLPFTNNIPQRDGGTHMAGFRAALT 300

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           RQIT Y E S  +KK+K ++ GDDCREG T+++S+K+PDP+FSSQTK+KLVSSEVR VVE
Sbjct: 301 RQITGYAESSGIAKKEKVTLTGDDCREGLTAIISVKVPDPKFSSQTKDKLVSSEVRPVVE 360

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + +GLS WLEE+P EA+ IV KV +A+  R+AAR+AR+LTRRKG LDIASLPGKLADC
Sbjct: 361 AVLGEGLSNWLEENPGEARTIVGKVAEAAAAREAARKARELTRRKGALDIASLPGKLADC 420

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVERARFDKMLSSQEIGTL
Sbjct: 421 QERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKMLSSQEIGTL 480

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG++ F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G LYI 
Sbjct: 481 ITALGTGIGREEFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHLYIA 540

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY  ++G+S  Y+KDE +LEDYLI+  +              +   L+  +D+A  +
Sbjct: 541 QPPLYKASKGRSHLYLKDERALEDYLIDGGVEGASLRLAT-GVAFAGPQLKALVDEARGV 599

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEKSEKSWHG 655
             ++   +  +D+T +EQA I+G       +    +  +A ++A RLN ++++ E+ W G
Sbjct: 600 RTILHGLHTRYDRTVVEQAAIAGALRPALAENPAEAEVVADEVARRLNALSDEIERGWEG 659

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                  ++ R  RGV++  VL+ + I S  ++     ++ + + Y   ++L   G+++ 
Sbjct: 660 EARAGGYVLSRTLRGVRQVAVLDEALISSQEARRLDERTDSLRQIYDAPVTLQRKGEEVV 719

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           + GP +L +T  ++GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ D + ADD
Sbjct: 720 LHGPVALFETTMALGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVKDTTDADD 779

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LF +LMGD VEPRREFIQEN+L    LD+
Sbjct: 780 LFVKLMGDVVEPRREFIQENALNVANLDV 808


>gi|88860613|ref|ZP_01135250.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas
           tunicata D2]
 gi|88817208|gb|EAR27026.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas
           tunicata D2]
          Length = 805

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/804 (51%), Positives = 556/804 (69%), Gaps = 13/804 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDESL G+ D I + ++
Sbjct: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDESLAGHCDDIAIMIH 64

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS +V DNGRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVN
Sbjct: 65  TDGSVSVRDNGRGIPTSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L+L I+REG ++E  +  G+ D PL V G + + TGTE+ F PS + F+  +++Y
Sbjct: 125 ALSEKLRLTIRREGKVHEQFYTRGVPDAPLAVIGES-DTTGTEIRFWPSGETFTDLNYHY 183

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V I L+D+R  + R     Y+GGI+AFV YL+++K P+ QS   
Sbjct: 184 DILAKRLRELSFLNSGVSIRLMDER--DERNDHFKYEGGIKAFVEYLNKNKTPVHQSVFH 241

Query: 250 IQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                  D IS+++AM+WNDG+ E V CFTNNIPQ+DGGTHL+G R ALTR + +Y++K 
Sbjct: 242 FNSTREEDGISVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKE 301

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L+ +
Sbjct: 302 GFNKKEKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMTEKLTEF 361

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L EHP EAKI+V K++DA+  R+AARRARD+TRRKG +D+A LPGKLADC E+DP  SEL
Sbjct: 362 LLEHPTEAKIVVTKIVDAARAREAARRARDMTRRKGAMDLAGLPGKLADCQEKDPALSEL 421

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+
Sbjct: 422 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 481

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D +   KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G++YI +PPLY + +G
Sbjct: 482 DEYKPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYIAQPPLYKVKKG 541

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K  +Y+KD+ +L +YL   +L +      D    I+   L N + D    + +I      
Sbjct: 542 KQERYIKDDPALTEYLTTLALEDSSLYVNDKAPAITGLALENIVKDYQATEGVIARLTRK 601

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK-------SWHGSINNS 660
           + ++ ++Q +          ++    +A   A   + ++E  +         +    N +
Sbjct: 602 YPESILKQLIYQPALEEADLKDSAKVIAWTQAVVDSLVSEDVDATIFNANTHFDAERNLT 661

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
             ++     G+ +  +L    I S   +  +     +         +      +++T   
Sbjct: 662 FPVITIRQHGIDKDHILNLDFITSHDYRKIKKTGELMANLIEEGGYIQRGEKTLEVTNFV 721

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             L+ + +  ++G+ +QRYKGLGEMN SQLWETT++P  R +L+VKI DA  AD LF+ L
Sbjct: 722 DALEWLITESKRGLYIQRYKGLGEMNPSQLWETTMDPSARRMLQVKIEDAIAADQLFATL 781

Query: 781 MGDEVEPRREFIQENSLP-SALDI 803
           MGD+VEPRREFI+ N+L    LD+
Sbjct: 782 MGDQVEPRREFIERNALRVVNLDV 805


>gi|240949606|ref|ZP_04753941.1| DNA gyrase subunit B [Actinobacillus minor NM305]
 gi|240295864|gb|EER46540.1| DNA gyrase subunit B [Actinobacillus minor NM305]
          Length = 809

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/813 (50%), Positives = 553/813 (68%), Gaps = 14/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q  SYD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEQNQ-QSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP  +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CQDIVVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L+L I+REG+++E  +  G  + PL V G+  + TGT V F PS D
Sbjct: 120 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPNAPLTVIGNT-DKTGTMVRFWPSLD 178

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF +  +F Y  L  RLRELSFLNS V I L+D+R  +       Y+GGI+A+V YL+  
Sbjct: 179 IFKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE--EHFKYEGGIKAYVEYLNEG 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +   P  +   +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 237 KTHIHNMPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRAALTRA 296

Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y++ S   KK   ++   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR  VE
Sbjct: 297 LKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 357 SSMNEALAEYLAENPDDAKNIVSKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 416

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 417 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 476

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI 
Sbjct: 477 ITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIA 536

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  +Y++D + +  Y I+ +L        +    +S   L + I     +
Sbjct: 537 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVSEDAPALSGVALESLITQYNDV 596

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----- 652
            KL +     +  + + + + +   + E  ++     A         +A+++  S     
Sbjct: 597 QKLFERLVRRYPASILNELIYTPALSTELAKDQAKVTAWNEQLMTQLMAKETGGSFYRAG 656

Query: 653 --WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             ++      +  +     G+   + L+ + + S          + + +       ++  
Sbjct: 657 VFFNEERQIYEPEIIVTTHGMDTTYRLDFNFMTSNEYGRITALGHELNDLLSPSAYVVRG 716

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             +  I+     LD +    RKG+++QRYKGLGEMN  QLWETT++P  R +L+V ITDA
Sbjct: 717 ERRQAISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 776

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             AD LFS LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 777 IAADKLFSTLMGDEVEPRRDFIESNALYAQLDI 809


>gi|159184123|ref|NP_353052.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
 gi|159139460|gb|AAK85837.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
          Length = 811

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/812 (61%), Positives = 626/812 (77%), Gaps = 10/812 (1%)

Query: 1   MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++        N+ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MTETSSSEVGANAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD++TVTLN DGS TV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHADLVTVTLNADGSVTVTDNGRGIPTDIHSSEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +GTEVTF
Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV Y
Sbjct: 181 LASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQELLYDGGLEAFVRY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  PI I   +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+A
Sbjct: 241 LDRAKKPLVDKPIAIHSEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY + S   K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP EAKI++ KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 361 VESLVNEALSTWLEEHPSEAKILIGKVVEAAVAREAARKARELTRRKGALDIASLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQEIG
Sbjct: 421 DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQEIG 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGT IG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LY
Sbjct: 481 TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY +TRGKS+QY+KDE++LE+YLI+  + E          V    DLR  I DAL
Sbjct: 541 IAQPPLYKVTRGKSVQYLKDEKALEEYLISMGIEEASLTLGT-GEVRVGADLREVILDAL 599

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSW 653
           ++  LI   +  + ++ +EQA I+G  N E   +        +++A RL+ IAE++E+ W
Sbjct: 600 RMRSLIDGLHSRYSRSIVEQAAIAGALNPELSADAARAQETVAEVARRLDMIAEETERGW 659

Query: 654 HGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            G +  +  +  +R+ RGV+E   L+   + S  +++      R  + Y T   L     
Sbjct: 660 SGVVLEDGGLRFERMVRGVKEISTLDMGLLGSADARHIDQLVARTRDIYATPPVLQRKDG 719

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
            +++ GP +LLD IF+ GRKG+SMQRYKGLGEMNA QLWETTL+ + RSLL+V++ DA+ 
Sbjct: 720 SMELAGPRALLDAIFAAGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVRVNDATD 779

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+RLMGDEVEPRR+FIQEN+L    LDI
Sbjct: 780 ADGLFARLMGDEVEPRRDFIQENALNVANLDI 811


>gi|261854634|ref|YP_003261917.1| DNA gyrase subunit beta [Halothiobacillus neapolitanus c2]
 gi|261835103|gb|ACX94870.1| DNA gyrase, B subunit [Halothiobacillus neapolitanus c2]
          Length = 817

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/820 (50%), Positives = 553/820 (67%), Gaps = 20/820 (2%)

Query: 1   MSDNI---------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51
           MSDN          Q+S YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN
Sbjct: 1   MSDNTPNDASQNAGQSSGYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDN 60

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           A+DE+L G+ D +TVT++ DGS +VSDNGRGIP D+H EEG+SAAEVIMT LHAGGKF+Q
Sbjct: 61  AVDEALAGHCDTVTVTMHADGSVSVSDNGRGIPVDIHAEEGVSAAEVIMTVLHAGGKFDQ 120

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I R G+ Y  S+  G+   PL   G A   +GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSDELELDIYRGGHAYHQSYRLGVPQAPLAEVG-ATEKSGT 179

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + FLPS  IF+   F+YD L  RLRELSFLNS +++ L D+ S   R  T +Y+GGI A
Sbjct: 180 SIRFLPSPTIFTDVVFHYDILAKRLRELSFLNSGIRVFLNDEISG--RADTFYYEGGIRA 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L++ K  + ++ +   G +D++ ++LA++WND Y EN+ C+TNNIPQ+DGGTHL+G
Sbjct: 238 FVEHLNKGKTVIHKNVLSFSGQKDSVLVELALQWNDSYQENLFCYTNNIPQRDGGTHLTG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR +  Y+E++   KK K S  G+D REG  +V+S+K+PDP+FSSQTKEKLVSSE
Sbjct: 298 FRTALTRTLNDYMERAGILKKAKVSTSGEDWREGLVAVISVKVPDPKFSSQTKEKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES  ++ L+ +LEE+P EA +I  K+++A+  R+AARRAR++TRRKG LDIA LP
Sbjct: 358 VKSAVESLTSERLAEFLEENPQEALLITNKIIEAARAREAARRAREMTRRKGALDIAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS
Sbjct: 418 GKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+GTLITALG GIG++ F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQM  L+  
Sbjct: 478 AEVGTLITALGCGIGREDFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMKELVER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + +GK  QY+KD+ +L  YL+  ++            +IS   L +  
Sbjct: 538 GHIYIAQPPLYKVKKGKQEQYLKDDLALNQYLLQLAVDGAALQVNAEAPLISGPALESMA 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN---VSLASKLANRLNFIAE- 647
            + L    +I      +D   ++  +           E +    +  ++    +N  A+ 
Sbjct: 598 REYLVAQAVIDRLSHRYDPAALKAVLHLPPMTAAEIVEDSALFEAWLNRFTESMNQFADA 657

Query: 648 ---KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
               S +        + I + R   GV  +  L      +   +     + +++      
Sbjct: 658 GVNYSSRFARTEEGLAGIQITRSQHGVSHETFLPAGFFSTADYRVLGELAIQLDGLIGED 717

Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             ++       IT     +D +   GR+G+ +QRYKGLGEMN  QLWETT+NP+TR LL+
Sbjct: 718 ARVLRGEKSAPITHFEQAIDWLMQEGRRGLGIQRYKGLGEMNPDQLWETTMNPETRRLLQ 777

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           V+I DA  +D++F+ LMGD VEPRR+FI++ +L    +DI
Sbjct: 778 VRIEDAIASDEIFTILMGDLVEPRRDFIEKFALSAVNIDI 817


>gi|170746766|ref|YP_001753026.1| DNA gyrase, B subunit [Methylobacterium radiotolerans JCM 2831]
 gi|170653288|gb|ACB22343.1| DNA gyrase, B subunit [Methylobacterium radiotolerans JCM 2831]
          Length = 814

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/815 (56%), Positives = 593/815 (72%), Gaps = 13/815 (1%)

Query: 1   MSD--NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+D    + + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L 
Sbjct: 1   MADTPQTEPAVYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 60

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+AD++TVTLN DGSCTVSDNGRGIP D+HKEEG+SAAEVIMT+LHAGGKF+Q SYKVSG
Sbjct: 61  GHADLVTVTLNADGSCTVSDNGRGIPVDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKVSG 120

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALSSWL+LRI R    + M F +G    PL V G      GTEVTFLPS
Sbjct: 121 GLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVIGPGNGRRGTEVTFLPS 180

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y+GGIEAFV YLDR
Sbjct: 181 TETFTMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYEGGIEAFVRYLDR 240

Query: 239 HKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +KP+  M SP+ +   RD I +++A  WND ++E VL FTNNIPQ+DGGTH++G R+AL
Sbjct: 241 SRKPIDGMTSPVVVSSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TRQ+T Y E S  +KK+K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  V
Sbjct: 301 TRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPAV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLAD
Sbjct: 361 ENVLNEGLSTWLEENPSQARSVMGKVVLAASAREAARKARETVTRKGALDIASLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS EIGT
Sbjct: 421 CQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIGT 480

Query: 477 LITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           LITALG GIG+ S     F+  KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 481 LITALGAGIGRSSTDREGFNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIER 540

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G LYI +PPLY   RG+   Y+KDE +LEDYLI+Q     +          +   L++ +
Sbjct: 541 GHLYIAQPPLYKAERGRRAIYLKDERALEDYLIDQGTEGAVLRLSSGAE-FAGAQLKSLV 599

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEKS 649
           ++A     +++  +  +D++ +EQAV++G F+ E+      +  LA   A RL+ IA++ 
Sbjct: 600 EEARTFRSILQGLHTRYDRSVVEQAVLAGAFDAEAASRAGEAEVLADMTARRLDAIADEI 659

Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           E+ W G        + R  RGV++  +L+   I S  ++     ++   E Y    +L+ 
Sbjct: 660 ERGWQGESFEGGYRLSRTLRGVRQVSILDAGLITSQEARRLSERADAFREIYGEPATLMR 719

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             D+  + GP +L + + + GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+V++ D
Sbjct: 720 KSDETVLHGPVALFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVRVKD 779

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + ADDLF +LMGD VEPRREFIQEN+L    LD+
Sbjct: 780 VTDADDLFVKLMGDVVEPRREFIQENALSVANLDV 814


>gi|269103823|ref|ZP_06156520.1| DNA gyrase subunit B [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163721|gb|EEZ42217.1| DNA gyrase subunit B [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 793

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/794 (50%), Positives = 536/794 (67%), Gaps = 10/794 (1%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + I VT+  DGS +VS
Sbjct: 2   LKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIVVTICEDGSVSVS 61

Query: 78  DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137
           D+GRGIPT+LH EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L
Sbjct: 62  DDGRGIPTELHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVEL 121

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            I R G+I+   + +G+   PL V G   + TGT + F PSS+ F+   F Y+ L  RLR
Sbjct: 122 TIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTTIRFWPSSETFTNTTFQYEILAKRLR 180

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN- 256
           ELSFLNS V I L D+R  E ++    Y+GGI+AFV +L+R+K P+ Q        R++ 
Sbjct: 181 ELSFLNSGVSIKLNDER-EEGKQDHFMYEGGIQAFVEHLNRNKTPIHQKVFHFNVEREDG 239

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK   SKK K +
Sbjct: 240 ITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAA 299

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L  +L E+P +AK
Sbjct: 300 TSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAK 359

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
            +  K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 360 TVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAG 419

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLR
Sbjct: 420 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLR 479

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556
           YH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PPLY + +GK  QY+KD+
Sbjct: 480 YHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKKGKQEQYIKDD 539

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
           E ++ +  + +L        +    ++   L N +       KLI+     +    + + 
Sbjct: 540 EDMQQFQTSLALENAALFTTEGAPAMAGLALENLVGQYNSTMKLIERMSRRYPTLLLNEL 599

Query: 617 VISGVFNCESDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIAR 669
           V       E   +     +  + +   LN           +       N+    V     
Sbjct: 600 VHQPRLTAEMLSDRAQVEAWVTPVIEALNAKQSGESHYTFDIVVDSENNHFLPKVVVRTH 659

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
           GV  ++ L    I S         S  +         +     K  +     +L+ +   
Sbjct: 660 GVDHEYPLSFELICSKEYSKLADLSEVLNGLLDDSAYVQRGERKQPVASFKEVLEWLNKE 719

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
            R+G+S+QRYKGLGEMN  QLWETT++P++R ++RV I DA  AD+LF+ LMGD+VEPRR
Sbjct: 720 SRRGLSLQRYKGLGEMNPDQLWETTMDPESRRMMRVTINDAVAADELFTTLMGDQVEPRR 779

Query: 790 EFIQENSLPSALDI 803
            FI+ N+L + LD+
Sbjct: 780 NFIEANALNANLDV 793


>gi|328541628|ref|YP_004301737.1| DNA gyrase subunit B [polymorphum gilvum SL003B-26A1]
 gi|326411380|gb|ADZ68443.1| DNA gyrase subunit B [Polymorphum gilvum SL003B-26A1]
          Length = 817

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/800 (60%), Positives = 610/800 (76%), Gaps = 5/800 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+AD +TVT
Sbjct: 19  QDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADRVTVT 78

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV
Sbjct: 79  LNADGSVTVTDNGRGIPTDVHATEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 138

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS+WL+LRI R G  + + F +G  + PLV  G +    GTEVTFLPS + F+  +F
Sbjct: 139 VNALSTWLELRIWRAGKEHFIRFRHGDAEAPLVEVGPSNGRKGTEVTFLPSPETFTRIEF 198

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++ TL+HRLREL+FLNS V+I L D+R  E + + +FY+GG+EAFV YLDR K PL+++P
Sbjct: 199 DFATLEHRLRELAFLNSGVRILLTDRRGVEEKAVELFYEGGLEAFVRYLDRAKHPLVEAP 258

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I +   RD I+++ A+ WND YHE VLCFTNNIPQ+DGGTHL+G R+ALTRQ+T Y + S
Sbjct: 259 ITVGAERDGITVEAALWWNDSYHEQVLCFTNNIPQRDGGTHLAGFRAALTRQVTGYADSS 318

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              KK+K S+ GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N  L+ W
Sbjct: 319 GLLKKEKVSLTGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINQALAEW 378

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEE+P  A+ +V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP K+EL
Sbjct: 379 LEENPARARAVVSKVVEAASAREAARKARELTRRKGALDIASLPGKLADCQERDPAKAEL 438

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FLVEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS EIGTLITALGTGIG+
Sbjct: 439 FLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSNEIGTLITALGTGIGK 498

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           + F+++KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G +YI +PPLY + RG
Sbjct: 499 EEFNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHIYIAQPPLYKVKRG 558

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           +S QY+KD+ +LEDYLI Q L +       S  V    DLR+ ++ A  I+ +    +  
Sbjct: 559 QSEQYLKDQTALEDYLIGQGLEDTSL-TLASGEVRMGADLRSVVETARSINAIFDGLHSR 617

Query: 608 HDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGS-INNSDILV 664
           +D+  +EQA I+G  N E   D       A+ +A RL+ +A++ E+ W G   ++  ++ 
Sbjct: 618 YDRAVVEQAAIAGALNPETLHDAAKAAEAAAYIARRLDILADEFERGWTGEARDDGSLVF 677

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
           +R  RGV+E   ++ + + S  ++     +  ++E Y    SL     +  I GP +LL 
Sbjct: 678 RRTVRGVEEVATIDAALLASADARRLDAQAKHLQEIYGKAASLRRKDSETAIRGPQALLA 737

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
           T+F+ GRKGIS+QRYKGLGEMN  QLWETTL+P+ RSLL+VK+ +A  ADD+F++LMGDE
Sbjct: 738 TVFAFGRKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKVKEADDADDIFTKLMGDE 797

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRREFIQ+N+L    LD+
Sbjct: 798 VEPRREFIQDNALSVANLDV 817


>gi|126724511|ref|ZP_01740354.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2150]
 gi|126705675|gb|EBA04765.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2150]
          Length = 805

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/805 (56%), Positives = 586/805 (72%), Gaps = 4/805 (0%)

Query: 1   MSDNIQNSS-YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+DN QN   Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YE +DN IDE+L G
Sbjct: 1   MADNEQNQEDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYECVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + VT++ D S +V DNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADFVNVTIHDDNSISVRDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL+LRI R+G  +   F +G     L V G A    GTEV FL S+
Sbjct: 121 LHGVGVSVVNALSVWLELRIWRDGKEHYAKFAHGDTAEHLRVVGDANGQKGTEVRFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + FS  ++++ TL++RLREL+FLNS V+I L D+R  E  +  +FY+GG++ FV YLDR 
Sbjct: 181 ETFSNLEYSFKTLENRLRELAFLNSGVRIILKDERPAEHLKSELFYEGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +++ PI ++G +D+I I++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR 
Sbjct: 241 KSSMLEEPIFVRGEKDDIGIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY + S  +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES 
Sbjct: 301 INSYAQSSGIAKKEKVAFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ LS W EE+P  AK+IV K+++A++ R+AAR+AR+LTRRK  LD+  L GKL DCSE
Sbjct: 361 MNEKLSEWFEENPQLAKMIVGKIVEAALAREAARKARELTRRKTALDVNFLAGKLKDCSE 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K+E+FLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+ML SQEIG L+ 
Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI  G+LYI +P
Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PL+ ++RGKS  Y+KD+ +L+DYL+ Q +   +    D    ++  DL   +++A  + +
Sbjct: 541 PLFKVSRGKSEVYLKDQPALDDYLVAQGVDGAVLKLADGTE-MAGADLVRVVEEARSVRR 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658
           +++ F  ++ +  +EQA I+  F   +       +A  +A RLN IA + E+ W G    
Sbjct: 600 ILQAFPTHYSQHILEQAAIARAFIPGAIDANIQGVADAIAERLNLIALEYERGWQGRPTQ 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I + RI RGV+E   L+G  + S  ++    F++ + E Y     LI       + G
Sbjct: 660 DHGIRLARILRGVEEVRTLDGRVMQSGEARKLAEFTDNMVEVYSQPAQLIRKDKITSVNG 719

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P SLL  I + G KG+S+QRYKGLGEMN  QLWETTL+PD R+LL+VKI D + ADD+F+
Sbjct: 720 PSSLLAAILTEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKIDDLADADDIFT 779

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
           +LMGD VEPRREFIQ N+L    LD
Sbjct: 780 KLMGDVVEPRREFIQNNALSVENLD 804


>gi|120596837|ref|YP_961411.1| DNA gyrase subunit B [Shewanella sp. W3-18-1]
 gi|146291115|ref|YP_001181539.1| DNA gyrase subunit B [Shewanella putrefaciens CN-32]
 gi|120556930|gb|ABM22857.1| DNA gyrase subunit B [Shewanella sp. W3-18-1]
 gi|145562805|gb|ABP73740.1| DNA gyrase subunit B [Shewanella putrefaciens CN-32]
 gi|319424421|gb|ADV52495.1| DNA gyrase, B subunit [Shewanella putrefaciens 200]
          Length = 805

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/808 (49%), Positives = 540/808 (66%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+T+++DGS +V D+GRGIP  +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TITIHVDGSVSVKDDGRGIPVAIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F PS D FS 
Sbjct: 121 VSVVNALSRKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I LID+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLIDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + +Y
Sbjct: 238 KEVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNNY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 298 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL+ 
Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KDE +L  YL  Q+L   +         +S   L   +    +++ ++  
Sbjct: 538 VKKGKQEQYLKDEPALTQYLTTQALDGTVVYPTQGAPGMSGEPLERLVTQYREVEAIVAR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKS-----EKSWHGS 656
               +      + +   +   E   D+           + L  +         E      
Sbjct: 598 LEQRYPTHITNRMLYHPMITNEMLADEGKMKEWIDAFIHELVEMESSGVLYSAEPILDPE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     G+   ++       S   +        ++        +       ++
Sbjct: 658 RKVYLPKITIRKHGIDTNYLFTYDFFQSSDYQRIGKLGAALDGMIEEGGYVQRGERVKEV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD   S  ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD L
Sbjct: 718 GSFLEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805


>gi|330500918|ref|YP_004377787.1| DNA gyrase subunit B [Pseudomonas mendocina NK-01]
 gi|328915204|gb|AEB56035.1| DNA gyrase subunit B [Pseudomonas mendocina NK-01]
          Length = 806

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/811 (49%), Positives = 545/811 (67%), Gaps = 15/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              IT+T++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CSEITITIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ F PS +
Sbjct: 118 HGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKPSEE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   F++D L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV +L+ +K
Sbjct: 177 TFANIHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEFLNTNK 234

Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + Q     IQ   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 235 TVVNQVFHFNIQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRH 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNNYIEQEGLAKKFKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+E++++Y+   +L +      ++   +S   L   + D   + K
Sbjct: 535 PLYKVKKGKQEQYIKDDEAMDEYMTQSALEDASLHVNENAPGLSGGALEKLVADYRGVMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----S 652
            +      + K   E  V     + E   DQ            RL  + +  +       
Sbjct: 595 TLDRLSRVYPKDLTEHFVYLPRVSVEQLADQSAMQGWLDGFTTRLKAVEKSGQTYNVSLR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                +     V+  + G+            S   K   +   ++         +     
Sbjct: 655 EDHERHLWLPEVEIKSHGLSNYVTFNRDFFASNDYKTVTVLGEQLNNLLEEGAYVQRGER 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  ++     LD + +   K  S+QRYKGLGEMN  QLWETT++P+ R +L+V I DA  
Sbjct: 715 KKPVSTFKEALDWLMNESTKRHSIQRYKGLGEMNPDQLWETTMDPEVRRMLKVTIEDAIA 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           AD +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 805


>gi|170718151|ref|YP_001785179.1| DNA gyrase subunit B [Haemophilus somnus 2336]
 gi|168826280|gb|ACA31651.1| DNA gyrase, B subunit [Haemophilus somnus 2336]
          Length = 807

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/811 (49%), Positives = 553/811 (68%), Gaps = 12/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +Y A SI++LKGL+AV+ RP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSENT-TENYGAGSIKVLKGLEAVRTRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CKDIIVTIHADNSVSVQDDGRGIPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L+L I+R+G ++E  +  G    PL V G     TGT V F PS  
Sbjct: 120 HGVGISVVNALSDKLQLTIRRQGKVHEQFYHLGDPQEPLSVIGETE-KTGTTVRFWPSPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  DF Y+ L  RLRELSFLNS V I L+DKR+   R+    Y+GGI+AFV YL+++K
Sbjct: 179 IFTNIDFEYEILAKRLRELSFLNSGVSIKLLDKRND--RQDHFHYEGGIKAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q        +D+I +++A++WND Y ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 TPIHQKIFYFSAEKDDIGVEVALQWNDSYQENVYCFTNNIPQRDGGTHLAGFRGALTRIL 296

Query: 301 TSYVEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
             YVE++     K   +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEVR+ VES 
Sbjct: 297 NKYVEENSNKKDKKDIATSGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEVRAPVESV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           ++D L  +LEE+P +AKIIV K+++A+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 357 MSDYLQEFLEENPNDAKIIVMKIIEAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 417 RDPALSELYLVEGDSAGGSAKQGRNRQNQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P LI  G +YI +P
Sbjct: 477 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPELIERGHVYIAQP 536

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+E ++ + +N +L        ++   ++   L   I +   + K
Sbjct: 537 PLYKVKKGKQEQYIKDDEEMQQFELNLALEGSSLYVNENAPAMNGIALEKLISEYNSVQK 596

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFI-----AEKSEKS 652
           +I     ++ +  ++  +       E    + +    A  L N L        + K    
Sbjct: 597 MISRLSFHYPEILLKSLIYQKALTNEMMIDESVVDFWAKSLVNILTDKKISGSSYKYRIV 656

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++   +  ++++     G+++ + L    +            N+++        +     
Sbjct: 657 FNNERHLYEVVIIIRTHGIEKNYFLNFEFLNGTEYSRIVKLGNQLQGLLEKGAYVSRGER 716

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  ++     ++ +    R+G+ +QRYKGLGEMN+ QL+ETT++P+ R++L+V I DA  
Sbjct: 717 QQSVSSFEQAIEWLTKESRRGLIIQRYKGLGEMNSDQLFETTMDPNKRTMLKVSIKDAVA 776

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           AD LF+ LMGDEVEPRREFI+ N+L + LDI
Sbjct: 777 ADQLFTTLMGDEVEPRREFIEMNALRANLDI 807


>gi|315125115|ref|YP_004067118.1| DNA gyrase subunit B [Pseudoalteromonas sp. SM9913]
 gi|315013628|gb|ADT66966.1| DNA gyrase subunit B [Pseudoalteromonas sp. SM9913]
          Length = 808

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/815 (51%), Positives = 555/815 (68%), Gaps = 19/815 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+++DGS +V DNGRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CDDIYVTIHLDGSVSVRDNGRGIPTSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+REG ++E  +  G+ D PL V G +    GTE+ F PS +
Sbjct: 116 HGVGVSVVNALSEKLKLTIRREGKLHEQFYTMGVPDAPLAVIGDSE-TNGTEIRFWPSGE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI AFV YL+R+K
Sbjct: 175 TFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-EENKSDHFKYEGGIRAFVEYLNRNK 233

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            P+ +        R+   IS++++M+WND + EN+ CFTNNIPQ+DGGTHL+G RSALTR
Sbjct: 234 TPVHKGVFHFTHEREEDGISVEVSMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRSALTR 293

Query: 299 QITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 294 TLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 353

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + +  + +L E+PL+AKI+V K++DA+  R+AAR+AR++TRRKG +D+A LPGKLAD
Sbjct: 354 EQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLAGLPGKLAD 413

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 414 CQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 473

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG GIG+D ++  KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G++YI
Sbjct: 474 LITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYI 533

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +GK  +Y+KD+ +L DYL + +LS       DS   +    L   + D   
Sbjct: 534 AQPPLYKVKKGKQERYIKDDPALVDYLTSLALSNAALYTSDSAEAVDGEALEAIVHDYQN 593

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEK-----S 649
             K+I+     +  T + + +       E   D+   ++   +L + L    E      +
Sbjct: 594 TVKVIERLKRKYPNTVMNRLIYQSELKKEDLSDEAKVIAWTKELVDDLVARDEDATIFHA 653

Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
                   N    +V     GV +  VL    I S   +   +    I         +  
Sbjct: 654 GTEHDTERNLYYPVVNIRQHGVDKAHVLHYDFITSRDYQRIAVTGKNIANIITEGAYIQR 713

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 +      L+ + +  ++GI +QRYKGLGEMN +QLWETT++P  R +L+V I D
Sbjct: 714 GEKTKPVDNFVDALEWLIAESKRGIYIQRYKGLGEMNPNQLWETTMDPSARRMLQVTIED 773

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           A  AD LF+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 774 AVAADQLFATLMGDQVEPRREFIETNALRVVNLDV 808


>gi|90019653|ref|YP_525480.1| DNA gyrase subunit B [Saccharophagus degradans 2-40]
 gi|89949253|gb|ABD79268.1| DNA gyrase subunit B [Saccharophagus degradans 2-40]
          Length = 808

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/814 (49%), Positives = 546/814 (67%), Gaps = 17/814 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +  +YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++E++DN+IDE+L G+
Sbjct: 1   MSE--EQRNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEIVDNSIDEALAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ + S TVSDNGRGIPT++H EEG+SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 59  CNEIKVVIHPNESVTVSDNGRGIPTEMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G ++E  + +G+   PL V G     +GT+V F PS++
Sbjct: 118 HGVGVSVVNALSEVLTLTIRRGGQVFEQVYHHGVPQAPLTVIGETE-VSGTQVHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F++D L  RLRELSFLNS V+I LID+RS +       Y+GG++AFV YL+++K
Sbjct: 177 TFTNIEFHFDQLGKRLRELSFLNSGVRIVLIDERSGKE--DVFEYEGGLKAFVGYLNQNK 234

Query: 241 KPLMQSPIRIQ-GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +          D + +++A++WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 235 NPINKVIHFSTFREEDGVGVEVALQWNDSFQENIFCYTNNIPQRDGGTHLAGFRAALTRN 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY+E     KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNSYIESEGLLKKEKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           ++   S +L E+P EAK IV K+++A+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 LSKSFSEYLLENPQEAKQIVGKMMEAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 415 KDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG   F+  KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM  LI  G +YI +P
Sbjct: 475 ALGCGIGAQEFNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHVYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I +GK  QY+KD+++L  +L N ++             +S   L   + +  K+  
Sbjct: 535 PLYKIAKGKQEQYLKDDDALTQFLTNAAMETSALHVSAEAPPLSGAQLEALVIEYRKVMS 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFI--AEKSEKSWHG 655
            I+     +    +E+ +     N E  +D+    +    L  +L  +  A K+ +    
Sbjct: 595 TIEKLSRLYPDHVLEEMIYLPALNKESLTDKAAVDAWCELLTAKLEVLNAASKTHRYVVN 654

Query: 656 SINNSD-----ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           +I N +       +  +A GV  +  L      S   K        +         +   
Sbjct: 655 TIENKERHTFIPELTIVAHGVGHKTRLNEDLFGSEDYKSMHKLGETLSGLIEEGAYVAKG 714

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             K  ++     LD I +  +KG  +QRYKGLGEMN  QLWETT++P+TR +L+V + DA
Sbjct: 715 ERKQPVSTFKEALDWIMAESKKGYGIQRYKGLGEMNPEQLWETTMDPETRRMLQVTVEDA 774

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             AD +F+ LMGD VEPRREFI+ N+L    LD+
Sbjct: 775 IGADQIFTCLMGDNVEPRREFIETNALSVANLDV 808


>gi|113461844|ref|YP_719913.1| DNA gyrase subunit B [Haemophilus somnus 129PT]
 gi|112823887|gb|ABI25976.1| DNA gyrase subunit B [Haemophilus somnus 129PT]
          Length = 807

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/811 (49%), Positives = 552/811 (68%), Gaps = 12/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +Y A SI++LKGL+AV+ RP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSENT-TENYGAGSIKVLKGLEAVRTRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CKDIIVTIHADNSVSVQDDGRGIPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L+L I+R+G ++E  +  G    PL V G     TGT V F PS  
Sbjct: 120 HGVGISVVNALSDKLQLTIRRQGKVHEQFYHLGDPQEPLSVIGETE-KTGTTVRFWPSPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  DF Y+ L  RLRELSFLNS V I L+DKR+   R+    Y+GGI+AFV YL+++K
Sbjct: 179 IFTNIDFEYEILAKRLRELSFLNSGVSIKLLDKRND--RQDHFHYEGGIKAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q        +D+I +++A++WND Y ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 TPIHQKIFYFSAEKDDIGVEVALQWNDSYQENVYCFTNNIPQRDGGTHLAGFRGALTRVL 296

Query: 301 TSYVEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
             YVE++     K   +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEVR+ VES 
Sbjct: 297 NKYVEENSNKKDKKDIATSGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEVRAPVESV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           ++D L  +LEE+P +AKIIV K+++A+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 357 MSDYLQEFLEENPNDAKIIVMKIIEAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 417 RDPALSELYLVEGDSAGGSAKQGRNRQNQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P LI  G +YI +P
Sbjct: 477 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPELIERGHVYIAQP 536

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+E ++ + +N +L        ++   ++   L   I +   + K
Sbjct: 537 PLYKVKKGKQEQYIKDDEEMQQFELNLALEGSSLYVNENAPAMNGIALEKLISEYNSVQK 596

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFI-----AEKSEKS 652
           +I     ++ +  ++  +       E    +      A  L N L        + K    
Sbjct: 597 MISHLSFHYPEILLKSLIYQKALTNEMMTDESAVDFWAKSLVNILTDKKISGSSYKYRIV 656

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++   +  ++++     G+++ + L    +            N+++        +     
Sbjct: 657 FNNERHLYEVVIIIRTHGIEKNYFLNFEFLNGTEYSRIVKLGNQLQGLLEKGAYVSRGER 716

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  ++     ++ +    R+G+ +QRYKGLGEMN+ QL+ETT++P+ R++L+V I DA  
Sbjct: 717 QQSVSSFEQAIEWLTKESRRGLIIQRYKGLGEMNSDQLFETTMDPNKRTMLKVSIKDAVA 776

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           AD LF+ LMGDEVEPRREFI+ N+L + LDI
Sbjct: 777 ADQLFTTLMGDEVEPRREFIEMNALRANLDI 807


>gi|254784277|ref|YP_003071705.1| DNA gyrase subunit B [Teredinibacter turnerae T7901]
 gi|237686033|gb|ACR13297.1| DNA gyrase, B subunit [Teredinibacter turnerae T7901]
          Length = 808

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/814 (49%), Positives = 549/814 (67%), Gaps = 17/814 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD     +YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++E++DN+IDE+L G+
Sbjct: 1   MSDT--EHNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I   ++ D S +VSDNGRGIPT++H EEG+SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 59  CSEILAVIHPDESISVSDNGRGIPTEMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS LKL I+R G ++E  + +G+   PL V G     TGTEV F PS++
Sbjct: 118 HGVGVSVVNALSSKLKLTIRRGGKVWEQVYKHGVPQAPLSVIGETE-LTGTEVHFWPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+++ L  RLRELSFLNS V+I L+D+RS +       Y+GG++AFV +L+++K
Sbjct: 177 TFNNIEFHFEHLAKRLRELSFLNSGVRIRLLDERSGKE--EVYEYEGGLKAFVEFLNQNK 234

Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +      Q   D + +++A++WNDG+ EN+ C+TNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 235 NPINKVMHFTAQREDDGVGVEVALQWNDGFQENIYCYTNNIPQRDGGTHLAGFRAALTRG 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY+E+    KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNSYIEREGIGKKEKVATTGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +    + +L E+P EAK +V K+++A+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MGSAFNDYLLENPQEAKSVVGKMIEAAKAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAKQGRSR+ QAILPL+GKILNVE+ARFDKMLSS E+GTLIT
Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRSRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG   F+ +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM  LI  G ++I +P
Sbjct: 475 ALGCGIGAQEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHIFIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I++GK  +Y+KD+++L+ +L N +L +           +S   L + + D  K   
Sbjct: 535 PLYKISKGKHEEYLKDDDALQQFLTNAALEQSKLHLSADAPALSGEQLESLVKDYRKGIA 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKS----- 652
           +I      +    + Q +       E  +D+ +      KL  RL+ +  +S+       
Sbjct: 595 VIDKLSRLYPNEVLHQMLYLPALQAESFTDEALVTEWNDKLQLRLDVLNAESKTHRFISV 654

Query: 653 --WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
              +        +++  A GV     L      S   +       ++         +   
Sbjct: 655 VKENKERGEFTPVIELTAHGVAHTIRLSSDLFSSDDYQVITALGEKLNGLIEEGAFVAKG 714

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
               ++      LD I +  +KG ++QRYKGLGEMN  QLWETT++P+TR +L+V + DA
Sbjct: 715 ERTREVNNFAEALDWIMNESKKGYNIQRYKGLGEMNPEQLWETTMDPETRRMLQVTVEDA 774

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             AD +F+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 775 IAADQIFTTLMGDQVEPRRDFIETNALAVANLDV 808


>gi|254500251|ref|ZP_05112402.1| DNA gyrase, B subunit [Labrenzia alexandrii DFL-11]
 gi|222436322|gb|EEE43001.1| DNA gyrase, B subunit [Labrenzia alexandrii DFL-11]
          Length = 820

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/805 (60%), Positives = 604/805 (75%), Gaps = 5/805 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +    + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+AD
Sbjct: 17  EAENGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAD 76

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            +TVTLN DGS TVSDNGRGIPTDLH EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 77  HVTVTLNPDGSVTVSDNGRGIPTDLHSEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 136

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L LRI R    + M+F +G    PL V G A    GTEVTFLPSS+ F
Sbjct: 137 VGVSVVNALSTKLDLRIWRNDQEHFMTFAHGDAVGPLEVVGPANGKKGTEVTFLPSSETF 196

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +  +F++ TL+HRLREL+FLNS  +I L DKR  E     +FY GG+EAFV YLDR K P
Sbjct: 197 TKTEFDFGTLEHRLRELAFLNSGARIILTDKRGVEDVVEELFYDGGLEAFVRYLDRAKHP 256

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L+++PI ++  +D I+++ AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQ+T 
Sbjct: 257 LIETPIAVRAEKDGITVEAAMWWNDSYHEQVLCFTNNIPQRDGGTHLAGFRGALTRQVTG 316

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y E +   KK+K S+ GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ ++ 
Sbjct: 317 YAESTGLMKKEKVSLSGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVENLISQ 376

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS WLEE+P  AK IV KV++A+  R+AAR+AR+LTRRKG LD+ASLPGKLADC ERD 
Sbjct: 377 TLSEWLEENPAPAKTIVSKVVEAASAREAARKARELTRRKGALDVASLPGKLADCQERDA 436

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELFLVEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS EIGTLITALG
Sbjct: 437 SKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSNEIGTLITALG 496

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG++ F+I KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI NG++YI +PPLY
Sbjct: 497 TGIGKEEFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIENGYVYIAQPPLY 556

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + RG+S QY+KD+E+LE+YLI Q   +       +  V +  DLR  ++ A  I  +  
Sbjct: 557 KVKRGQSEQYLKDQEALENYLIAQGSDDTSLKIA-NGEVRTGQDLRQVVETARAISDIFD 615

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGS-INN 659
             +  +++  +EQA I+G  N E  ++       A+ +A R++ +A++ E+ W G   ++
Sbjct: 616 GLHSRYNRDVVEQAAIAGALNAEILEDQGKAEEAATYIARRMDILADEFERGWTGEARDD 675

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             ++  R+ RGVQE   ++ + + S  ++     +  + E Y     L       +I GP
Sbjct: 676 GSLVFARMVRGVQEVATIDAALLGSTDARRLAAHAAHLNEVYGKAAVLQRKDVPTEIRGP 735

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            +LL  IF+ G+KGIS+QRYKGLGEMN  QLWETTL+P+ RSLL+VK+ +A  ADD+F++
Sbjct: 736 RALLQHIFAFGQKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKVREADDADDIFTK 795

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGDEVEPRREFIQ+N+L    LDI
Sbjct: 796 LMGDEVEPRREFIQDNALAVANLDI 820


>gi|332304390|ref|YP_004432241.1| DNA gyrase, B subunit [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171719|gb|AEE20973.1| DNA gyrase, B subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 806

 Score =  927 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/812 (50%), Positives = 553/812 (68%), Gaps = 15/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  +   YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MAEENK---YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ DGS +V D+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CTNINVKIHTDGSVSVKDDGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L++ I+R G ++E  + +G+   PL V G + + +GT + F PS +
Sbjct: 118 HGVGVSVVNALSRRLQILIRRAGKVHEQEYQHGVPQKPLEVIGES-DTSGTSIRFWPSEE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I L D+R  +       Y+GGI+AFV YL+++K
Sbjct: 177 TFTGIEFHYDILAKRLRELSFLNSGVSIILEDERDGKR--DHFMYEGGIQAFVEYLNQNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ Q        RD+ IS+++A++WND + ENV CFTNNIPQ+DGG+HL+G R ALTR 
Sbjct: 235 TPVHQQVFHFNSERDDGISVEVALQWNDSFQENVFCFTNNIPQRDGGSHLAGFRGALTRT 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +++EK   +KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVR  VE+ 
Sbjct: 295 LNAFMEKEGHNKKNKTSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVRPAVETV 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P  +KII+ K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC E
Sbjct: 355 MGEKLNEFLLENPSASKIIINKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 415 KDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D +D  KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI +P
Sbjct: 475 ALGCGIGRDEYDPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY   +GK  QY+KD++SL  YL   +L        +    +S   L   ++      K
Sbjct: 535 PLYKTKKGKQEQYLKDDDSLTKYLTAIALDNASIHVNEEAPGLSGPSLEKLVNQYQNAMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQE------INVSLASKLA-NRLNFIAEKSEKS 652
           +IK       +  +   V S V + +  Q+      +  S    L  N ++    + E  
Sbjct: 595 MIKRVSRVMPEVILTSLVYSKVISLQDLQDEASLNVVAKSFTDSLTRNEVDGATYRYEVR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            +   NN  I +     G+  ++ ++   I S      R  +  I         +  N  
Sbjct: 655 VNSERNNYYIALIIRLHGIDTEYKIDQEFIESIEYTRLRELNEAINGLIEEGGYVKRNDK 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              I      LD + +  +KG  +QRYKGLGEMN  QLWETT++P +R +L+VK+ DA  
Sbjct: 715 VKPIFSFAEGLDWLMAESKKGQYIQRYKGLGEMNPEQLWETTMDPGSRRMLQVKVEDAIA 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD VEPRR FI++N+L    LD+
Sbjct: 775 ADQLFTTLMGDHVEPRRAFIEDNALRVANLDV 806


>gi|329894833|ref|ZP_08270633.1| DNA gyrase subunit B [gamma proteobacterium IMCC3088]
 gi|328922727|gb|EGG30061.1| DNA gyrase subunit B [gamma proteobacterium IMCC3088]
          Length = 805

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/809 (49%), Positives = 543/809 (67%), Gaps = 14/809 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N +YD+ SI +LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSNQNYDSSSITVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSTI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + ++ D S TVSD+GRGIPT++H EEG+SAAEVIMT LHAGGKF+  +YKVSGGLHGVG
Sbjct: 61  EIVVHPDESITVSDDGRGIPTEMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALSS L L ++R+G ++E  + +G+   PL V G    +TGT V F PS + FS 
Sbjct: 120 VSVVNALSSSLTLTVRRQGKVFEQHYQHGVPQAPLAVVGET-QNTGTTVRFSPSPETFSN 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F++D L  RLREL+FLNS V I L D+RS E    T  Y GG+ AFV YL+R+K P+ 
Sbjct: 179 IEFHFDILAKRLRELAFLNSGVNIKLTDERSGES--ETYNYDGGLGAFVDYLNRNKTPIN 236

Query: 245 QSPIRIQ--GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +             +++++A++WND + EN+LC+TNNIPQKDGGTHL+G R+ALTR + S
Sbjct: 237 KLFHFANEADEETGVAVEVALQWNDSFQENLLCYTNNIPQKDGGTHLAGFRAALTRGLNS 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y+E+    KK K    GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  ++ 
Sbjct: 297 YIEREGLGKKAKIGTTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQAMSA 356

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +L E+P +AK IV K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP
Sbjct: 357 RLNDYLLENPGDAKTIVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDP 416

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SE++LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML S E+GT++TALG
Sbjct: 417 ALSEIYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLGSAEVGTIVTALG 476

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG++ FD  KLRYH IIIMTDADVDG+HIRTLLLTFFFR M  LI  G +YI +PPLY
Sbjct: 477 CGIGKEEFDAEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRHMRELIERGHIYIAQPPLY 536

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I++GK  QY+KD+++L  +L   +L +   +       I+   L   ++    +DK I 
Sbjct: 537 KISKGKQSQYLKDDDALNAFLTQSALEDAALITDPEAPPIAGAALEALVEQYRAVDKTIS 596

Query: 603 DFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SWHG 655
                +    + + V S V   ++   ++      + L++RL   +    +         
Sbjct: 597 RLARLYTHDVLWRLVYSEVLTVDAMANEQSVQKFGADLSDRLQRYSVNGSEYSVYVRKDQ 656

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             N    +VK    GV+ + VL      S   +        + +      ++        
Sbjct: 657 ERNLYLPVVKFYNHGVEYETVLGRDFFGSAEYRQLTALGATLGDLIGPEGAIRRGDKSQP 716

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +      L  + +   KG S+QRYKGLGEMN  QLWETT++P+TR +L+V I DA  AD 
Sbjct: 717 VREFTEALAWLMTEAAKGYSIQRYKGLGEMNPEQLWETTMDPETRRMLQVTIEDAIMADQ 776

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +F+ LMGD+VEPRREFI++N+L    LD+
Sbjct: 777 MFTTLMGDQVEPRREFIEQNALNVANLDV 805


>gi|110832865|ref|YP_691724.1| DNA gyrase subunit B [Alcanivorax borkumensis SK2]
 gi|110645976|emb|CAL15452.1| DNA gyrase, subunit B [Alcanivorax borkumensis SK2]
          Length = 805

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/808 (50%), Positives = 551/808 (68%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MAEKKYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D S ++ DNGRGIPT++H+EEG+SAAEVIMT LHAGGKF+  +YKVSGGLHGVG
Sbjct: 61  KVVIHPDESMSIQDNGRGIPTEMHEEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I+R G ++E  + +G+   PL V G   + +GT V F PS + FS 
Sbjct: 121 VSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSSGTAVHFRPSPETFSN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+ AFVSYL+ +K PL 
Sbjct: 180 IKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGLSAFVSYLNTNKTPLN 237

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY
Sbjct: 238 QVFHFNYEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K    KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + D 
Sbjct: 298 MDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDL 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
              +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC ++DP 
Sbjct: 358 FQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQQKDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG 
Sbjct: 418 LSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++I KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PPLY 
Sbjct: 478 GIGRDEYNIEKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK   Y+KD+ ++E+YL   +L +      +    IS   L   I +   + K++  
Sbjct: 538 VKKGKQETYLKDDPAMEEYLTTLALDKTGLYPGNDAPPISGEPLAKLIAEYRGVMKIVDR 597

Query: 604 FYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRLNFIAEKSE-----KSWHGS 656
                 +  +EQ +     +    +D+   +     L  R++ I + ++           
Sbjct: 598 QSRVFPEEVLEQMIYMPSLSESSLNDEAAMMQWCETLGKRVDAITDATQTFTITAQRDEE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  V+ +A GV  ++ +    + S   +  +     +E        +     +  I
Sbjct: 658 RGLYLPRVQVLAHGVPREYKVTLDFLQSPDYQKIKALGETLEGLLAEDAYIQRGESQRPI 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD + +  R+G S QRYKGLGEMNA QLWETT++P++R +L+V I DA  AD +
Sbjct: 718 RHFAEALDWLMAQARRGTSFQRYKGLGEMNADQLWETTMDPESRRMLQVTIEDAIAADQI 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+V+PRR FI+ N+L    LD+
Sbjct: 778 FTCLMGDDVDPRRRFIESNALQVSNLDV 805


>gi|94502204|ref|ZP_01308699.1| DNA gyrase subunit B [Oceanobacter sp. RED65]
 gi|94425665|gb|EAT10678.1| DNA gyrase subunit B [Oceanobacter sp. RED65]
          Length = 808

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/813 (50%), Positives = 540/813 (66%), Gaps = 17/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MST---ENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S +VSDNGRGIPTD+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CSEIRVVIHPDESISVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ LK+ I+R G ++E S+  G+ D PL   G+    +GT + F PS +
Sbjct: 118 HGVGVSVVNALSNKLKMTIRRAGKVWEQSYTMGVPDAPLAEVGNTE-TSGTTIHFHPSPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   FNYD L  RLRELSFLNS V+I L D+RS   RE    ++GG+++FV YL+ +K
Sbjct: 177 TFTNIHFNYDHLAKRLRELSFLNSGVRIVLKDERSD--REEVFEFEGGLKSFVEYLNTNK 234

Query: 241 KPLMQSPIR---IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             L              D I +++AM+WND + EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 235 TALNDIFHFQLEGDNREDGIGVEVAMQWNDSFSENIYCFTNNIPQRDGGTHLAGFRGALT 294

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 295 RSLNSYIEREGLAKKAKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAVE 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             ++   + +L E P +AK IV K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 355 QEMSRSFNDFLLEQPQQAKEIVSKMMDAARAREAARKAREMTRRKGALDVAGLPGKLADC 414

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP +SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GTL
Sbjct: 415 QEKDPSQSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTL 474

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALG GIG++ FD +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP +I  G ++I 
Sbjct: 475 ITALGCGIGREEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHVFIA 534

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY I RGK+ QY+KD+ +LE+YL + +L             IS + L + +++  ++
Sbjct: 535 QPPLYKIKRGKNEQYIKDDMALEEYLTSNALDGAALYVNPQAPAISGDRLEDIVNNFRQV 594

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRL-----NFIAEKSE 650
              I      + +  ++  +       +  ++     +   +L +R      N      E
Sbjct: 595 MHDIDRLSRVYPQEVLKAMIYISTLTQDDLKDRSKVEAWCEELQSRFGNPRGNDTHVVLE 654

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
                  +     VK I   + + ++L      S   K    F  RI         +   
Sbjct: 655 IKEDSERHIYLPDVKVINHSIPKDYILTHDFFDSPVYKAISAFGERIHGMLDDGAYVQRG 714

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             K         L  +    RKG S+QRYKGLGEMN  QLWETT++P+ R +LRV I DA
Sbjct: 715 ERKQPADSFEGALAWLMGEARKGYSIQRYKGLGEMNPEQLWETTMDPEARRMLRVTIEDA 774

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
             AD +F+ LMGDEVEPRR+FI+ N+L    LD
Sbjct: 775 VAADQIFTTLMGDEVEPRRDFIESNALLVDNLD 807


>gi|91791373|ref|YP_561024.1| DNA gyrase, B subunit [Shewanella denitrificans OS217]
 gi|91713375|gb|ABE53301.1| DNA gyrase subunit B [Shewanella denitrificans OS217]
          Length = 805

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/808 (49%), Positives = 543/808 (67%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+T++ DGS +V D+GRGIP  +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TITIHTDGSVSVQDDGRGIPVAIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R G IYE  +  G+ D P+   G A   TGTE+ F PS + F+ 
Sbjct: 121 VSVVNALSHKLQLTIRRGGKIYEQFYTMGVPDAPIAAIGDA-IKTGTEIRFWPSGETFTN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F++D L  R+RELSFLNS V I LID+R  +       Y+GGI AFV+YL+R+K P+ 
Sbjct: 180 LEFHFDILAKRVRELSFLNSGVGIRLIDERDNKN--EFFKYEGGISAFVTYLNRNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y
Sbjct: 238 KDVFHFAHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRGALTRNLNTY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + 
Sbjct: 298 MEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQ 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D +D  K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL+ 
Sbjct: 478 GIGRDEYDPEKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLFK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KDE +L +YL  Q+L             ++   L   +    +++ +I  
Sbjct: 538 VKKGKQEQYLKDEPALTEYLTTQALDGTRIYPTQGAPGMTGEPLERLVAQYREVETIIAR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRL-----NFIAEKSEKSWHGS 656
               +    + + +           D+    +  ++    L     N +       +   
Sbjct: 598 LEKRYPSIVLNRMLYHPEVTGAMLADETQMKAWCAEFVADLIELETNGVIYDMVTEFDME 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     G+  +++       S   +        ++        +       ++
Sbjct: 658 RKVYLPKMVIRKHGIDTEYLFGYDFFHSLDYQRIAKLGAALDGMVEEGGYVQRGEKVKEV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD + S  ++G+ +QRYKGLGEMN  QLWETT++P+TR +LRV I DA  AD L
Sbjct: 718 ETFLEALDWMISEAKRGLYIQRYKGLGEMNPEQLWETTMDPETRRMLRVTIEDAVGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 778 FTTLMGDQVEPRREFIEANALNVANLDV 805


>gi|197286953|ref|YP_002152825.1| DNA gyrase subunit B [Proteus mirabilis HI4320]
 gi|227354806|ref|ZP_03839223.1| DNA gyrase subunit B [Proteus mirabilis ATCC 29906]
 gi|194684440|emb|CAR46165.1| DNA gyrase subunit B [Proteus mirabilis HI4320]
 gi|227165124|gb|EEI49955.1| DNA gyrase subunit B [Proteus mirabilis ATCC 29906]
          Length = 804

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/806 (50%), Positives = 554/806 (68%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY D I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCDEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVRDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS  L+L I R+G I++  + +G+ D+ L V G   + +GT V F PS D F    
Sbjct: 122 VVNALSEKLELTIHRDGKIHQQIYRSGVPDDRLKVIGET-DKSGTFVRFWPSLDTFKGET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I LIDKR  + RE    Y+GGI+AFV YL R+K P+ Q
Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLIDKR--DNREDHFHYEGGIKAFVEYLSRNKTPIHQ 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++AM WNDG+ ENV CFTNNIPQ+DGGTHL G R+A+TR + +Y++
Sbjct: 239 NVFYFSTEKDGIGVEVAMLWNDGFQENVYCFTNNIPQRDGGTHLVGFRTAMTRTLNNYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 299 KEGFNKKSKISATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADCSERDP  S
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCSERDPAFS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G ++I +PPLY + 
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHIFIAQPPLYKVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD++++++YL++ +L        +    +    L   + D     K+I+   
Sbjct: 539 KGKQEQYIKDDDAMDEYLMSIALDGAALYVSEHAPAMHGAQLEKLVVDYHAAHKIIRRME 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEK-----SWHGSIN 658
             +  + +   V       +   +        S L NRLN   E+S       + +    
Sbjct: 599 RLYPLSMLNSLVYHSTLTEDDLSDKAKVEEWMSGLVNRLNNAEEQSSTYSYTITQNEENR 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +++    G+   + L+   I S   +      + I         +     +  I+ 
Sbjct: 659 LFEPVLRIRTYGIDTDYKLDYDFIHSSEYQRITNLGDIIGNLIEEGAYIERGERRQAISS 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT+NPDTR +++V + DA   D+LF+
Sbjct: 719 FEEALEWLTKESRRGLAVQRYKGLGEMNPEQLWETTMNPDTRRMMQVTVKDAIATDELFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR FI+EN+L +  +DI
Sbjct: 779 TLMGDAVEPRRAFIEENALKAENIDI 804


>gi|49474867|ref|YP_032908.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1]
 gi|49237672|emb|CAF26857.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1]
          Length = 810

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/811 (60%), Positives = 614/811 (75%), Gaps = 9/811 (1%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD     ++   Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+
Sbjct: 1   MSDEITSQMEGDDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A ++ VTL+ DGSC+V DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKV
Sbjct: 61  LAGHATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGVSAAEVIMTQLHAGGKFDQNSYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WL+LRI+R G I+EMSF +G+ D PL + G  G ++G+E+ FL
Sbjct: 121 SGGLHGVGVSVVNALSVWLQLRIRRNGKIHEMSFTHGVADAPLKIVGDCGKESGSEIRFL 180

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PSS+ F++ +F+++TL+ RLREL+FLNS V I L+D+R  + + + + Y+GG+  FV Y+
Sbjct: 181 PSSETFTMVEFDFETLERRLRELAFLNSGVHILLVDQRHADIKSVELHYEGGLTEFVKYI 240

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           D+ KK L+  PI I   +D +++++A+ WND YHE VLCFTNNIPQ+DGGTHL G RSAL
Sbjct: 241 DQSKKALLDHPIYITSEKDGMNVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TRQI  Y E S   KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +V
Sbjct: 301 TRQINGYAESSGIVKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ VN+GLSAWLEEHP EAKI+  KV++A+  R+AAR+AR+LTRRKG LDI SLPGKLAD
Sbjct: 361 ENLVNEGLSAWLEEHPNEAKIVTSKVVEAAAAREAARKARELTRRKGALDITSLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS  IGT
Sbjct: 421 CQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSDMIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALGT IG+D F  +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI
Sbjct: 481 LITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYI 540

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY +TRGKS QY+K+E + E++LI+  L E          V +  DLR   +DA  
Sbjct: 541 AQPPLYKVTRGKSFQYIKNEAAFEEFLIDTGLEETTLELST-GEVRAGADLRQLAEDARV 599

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWH 654
           + +L+   +  +++  +EQA I G FN E+    E     A  +A+RL+ IA+  E+ W+
Sbjct: 600 LRQLLNGLHTRYNRNIVEQAAIVGAFNPEAFATPEKAKKTADNVASRLDLIADDMERGWN 659

Query: 655 GSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           G    N D+  +RI RGV++   L+   I S  ++     S  + E Y +   L      
Sbjct: 660 GEFTPNGDLYCERILRGVKDVITLDAGLINSVDARQIDRISQNLMETYSSPPLLHRKDKS 719

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            +I GP SLL++IF+ G+KGI++QRYKGLGEMNA QLWETTLNPD R+LL+VKI DA+ A
Sbjct: 720 ERILGPMSLLESIFTNGKKGITLQRYKGLGEMNAEQLWETTLNPDARALLQVKINDATDA 779

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D LFSRLMGDEVEPRR FIQ+N+L    LDI
Sbjct: 780 DSLFSRLMGDEVEPRRAFIQDNALSVANLDI 810


>gi|90420488|ref|ZP_01228395.1| DNA gyrase, subunit B [Aurantimonas manganoxydans SI85-9A1]
 gi|90335216|gb|EAS48969.1| DNA gyrase, subunit B [Aurantimonas manganoxydans SI85-9A1]
          Length = 811

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/806 (60%), Positives = 614/806 (76%), Gaps = 5/806 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +D + N  Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 7   TDPLANPEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             +TVTLN +GSCTV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 67  THVTVTLNPEGSCTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L ++I+R+G I+EMSF +G+ D  L VTG AG++TGT +TFLPS+D 
Sbjct: 127 GVGVSVVNALSVKLSMKIRRKGKIHEMSFTHGVPDGSLEVTGDAGDETGTAITFLPSTDT 186

Query: 182 FS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F  V +F+Y TL+HRLREL+FLNS V+I L DKR  + +   +FY+GG+EAFV YLDR +
Sbjct: 187 FQGVTEFDYGTLEHRLRELAFLNSGVRIILTDKRHADEKVTELFYEGGLEAFVRYLDRAR 246

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KPL+  PI + G +D I ++ A+ WND Y+E+VLCFTNNIPQ+DGGTH++G R  LTRQ+
Sbjct: 247 KPLIPEPIVLYGEKDGIVVEAALWWNDSYNESVLCFTNNIPQRDGGTHMAGFRGGLTRQV 306

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           T Y E S   K++K ++ GDDCREG + VLS+K+PDP+FSSQTK+KLVSSEVR VVES V
Sbjct: 307 TGYAETSGALKREKVTLTGDDCREGLSCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLV 366

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ LS W EEHP E K+++ KV++A+  R+AAR+ARDLTRRKG LDI SLPGKLADC ER
Sbjct: 367 NETLSTWFEEHPQEGKVVIAKVVEAASAREAARKARDLTRRKGALDITSLPGKLADCQER 426

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP KSE+F+VEGDSAGGSAK  RSR+NQAILPLRGKILNVERARFD+ML S +IGTLITA
Sbjct: 427 DPAKSEIFIVEGDSAGGSAKGARSRKNQAILPLRGKILNVERARFDRMLGSDQIGTLITA 486

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGT IG+D F+I KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G++YI +PP
Sbjct: 487 LGTSIGKDEFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGYIYIAQPP 546

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY +TRGK  QY+KDE++LE+YLI   L +          V +  DLR  ++DAL++ ++
Sbjct: 547 LYKVTRGKQSQYLKDEKALENYLIEGGLDDAGL-TLAHGEVRTGRDLRGVVEDALQVRQV 605

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSIN 658
           +   +  +D++ IEQA I G  + E   +      +A ++A RL+ +AE++E+ W G   
Sbjct: 606 MSSLHSRYDRSVIEQAAIVGALSPEMADDAAKGPQMAQRIAERLDDVAEETERGWSGEAV 665

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +    + R  RGV E   ++ + I S         + R+ E Y  +  L     + ++TG
Sbjct: 666 DGGYRLMRTVRGVSEVQTIDAALINSGDGLQLNRLAGRLAEIYQGLPVLRRRDTERELTG 725

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  LL  +F +GRKG+++QRYKGLGEMN  QLWETTL+P+ R+L+ VKI DA+ AD LFS
Sbjct: 726 PLELLTAVFEVGRKGLTLQRYKGLGEMNPEQLWETTLDPEARTLVMVKINDATDADQLFS 785

Query: 779 RLMGDEVEPRREFIQENSL-PSALDI 803
           RLMGDEVEPRREFIQE++L  + LDI
Sbjct: 786 RLMGDEVEPRREFIQEHALQVANLDI 811


>gi|269799056|gb|ACZ43806.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799060|gb|ACZ43808.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 805

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/808 (50%), Positives = 543/808 (67%), Gaps = 14/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  VVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS + F+ 
Sbjct: 121 VSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K P+ 
Sbjct: 180 TLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTPIN 238

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + +Y
Sbjct: 239 KDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNY 298

Query: 304 VEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           +EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + +
Sbjct: 299 MEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLADC E+DP
Sbjct: 359 KLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQEKDP 418

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G
Sbjct: 419 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMG 478

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPLY
Sbjct: 479 CGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + +GK  +Y+KD+  L  YL   +L +           I    L + ++   KI+ L+ 
Sbjct: 539 KMKKGKQERYIKDDADLTQYLTTIALDDAGLFVNADAPAIRGAALEDLVNGYRKIESLMG 598

Query: 603 DFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSEKSWHG 655
               +  K F  + +   V   E   D+    + A +L   L           +  +   
Sbjct: 599 KLNRSLPKVFTNEMIYQSVLTAEMLTDEASTTAWAEELVATLTAKEVTGTLYSARVAQDE 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                  ++     G+   +        S            I         +       +
Sbjct: 659 ESQLFYPVLSIRQHGLDTSYDFTPGFFNSKEYATLTGLG--IANLLEEGAYIKRGEKSRE 716

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +T     L+ + +  ++G  +QRYKGLGEMN SQLWETT++P+TR +L+V+I DA  AD 
Sbjct: 717 VTNFVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPETRRMLQVRIEDAVAADQ 776

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802
           LF+ LMGD VEPRREFI+EN+L    LD
Sbjct: 777 LFTTLMGDHVEPRREFIEENALKVANLD 804


>gi|149375632|ref|ZP_01893401.1| DNA gyrase, B subunit [Marinobacter algicola DG893]
 gi|149360034|gb|EDM48489.1| DNA gyrase, B subunit [Marinobacter algicola DG893]
          Length = 804

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/807 (49%), Positives = 532/807 (65%), Gaps = 11/807 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S+Y++ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++E++DN+IDE+L G+   I
Sbjct: 1   MSESNYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D S TV DNGRGIP DLHKEEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  GVIIHPDESVTVRDNGRGIPVDLHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALSS L L I+R+G +YE ++ NG+   PL V G   + +GT+V F+PS + F+ 
Sbjct: 121 VSVVNALSSSLTLTIRRDGKVYEQTYNNGVPKAPLDVVGDT-DASGTKVHFIPSPETFTS 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F++D L  RLREL+FLNS V+I L D+RS +       Y+GG+ AFV +L+ +K P+ 
Sbjct: 180 IEFHWDILAKRLRELAFLNSGVRIRLQDERSGKE--EVFEYEGGLRAFVEHLNSNKTPIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +    I+   D I++++AM+WND + EN+  FTNNIPQ+DGGTHL+G R+ALTR + +Y+
Sbjct: 238 RVFHFIKEREDGIAVEVAMQWNDAFQENIYTFTNNIPQRDGGTHLAGFRAALTRSLNNYI 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 298 EHEGLGKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L+E P EAK+IV K+++A+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 358 ADFLQEQPSEAKLIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPAL 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG G
Sbjct: 418 SELFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ F+  KLRYH +IIMTDADVDG+HIRTLLLTF FRQM  +I  G ++I  PPLY +
Sbjct: 478 IGREEFNPEKLRYHSLIIMTDADVDGSHIRTLLLTFLFRQMREIIERGHVFIAMPPLYKV 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RGK  QY+KDE++ E YL   +L             I  + L   + D   +  +I   
Sbjct: 538 KRGKQEQYLKDEKAKEAYLTQTALEGAQLYVNPEAPAIKDSALETMVKDYQAVMAMIDRL 597

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEK-----SWHGSI 657
              +    ++Q + +     E  +E        ++L + L        K           
Sbjct: 598 SRAYPAKVLQQMLDNVTLKPEHLKEEAEVARWVARLGDGLQLDTRTGTKYTFSVEKDTER 657

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
           N     V     G+    V       S            ++        +     K  + 
Sbjct: 658 NLYLPKVVIYVHGIPHDHVFSHEFFESSSYAAIARMGETLDGLIEDGAYIQRGERKQAVL 717

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +    ++G+++QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD +F
Sbjct: 718 SYEGALDWLMKEAQRGLNIQRYKGLGEMNPEQLWETTMDPETRRMMKVTIEDAIAADQIF 777

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMGD+VEPRR FIQ N+L    LD+
Sbjct: 778 TTLMGDDVEPRRLFIQSNALEVTNLDV 804


>gi|152998559|ref|YP_001364240.1| DNA gyrase subunit B [Shewanella baltica OS185]
 gi|160873130|ref|YP_001552446.1| DNA gyrase subunit B [Shewanella baltica OS195]
 gi|217971220|ref|YP_002355971.1| DNA gyrase subunit B [Shewanella baltica OS223]
 gi|151363177|gb|ABS06177.1| DNA gyrase, B subunit [Shewanella baltica OS185]
 gi|160858652|gb|ABX47186.1| DNA gyrase, B subunit [Shewanella baltica OS195]
 gi|217496355|gb|ACK44548.1| DNA gyrase, B subunit [Shewanella baltica OS223]
 gi|315265355|gb|ADT92208.1| DNA gyrase, B subunit [Shewanella baltica OS678]
          Length = 805

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/808 (49%), Positives = 540/808 (66%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+T+++DGS +V D+GRGIP  +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F PS D FS 
Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY
Sbjct: 238 KDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 298 MENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL+ 
Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KDE +L  YL  Q+L   I         +S   L   +    +++ ++  
Sbjct: 538 VKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQGAIGMSGEPLERLVTQYREVEAIVAR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKS-----EKSWHGS 656
               +      + +   +   E   D+           + L  +         E      
Sbjct: 598 LEQRYPTHITNRMLYHPMITNEMLADEGKMKEWIDAFIHELVEMESSGVLYSAEPILDPE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     G+   ++       S   +        ++        +       ++
Sbjct: 658 RKVYLPKITIRKHGIDTNYLFTYDFFQSSDYQRIGKLGAALDGMIEEGGYVQRGERVKEV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD   S  ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD L
Sbjct: 718 GSFLEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805


>gi|126172261|ref|YP_001048410.1| DNA gyrase subunit B [Shewanella baltica OS155]
 gi|125995466|gb|ABN59541.1| DNA gyrase subunit B [Shewanella baltica OS155]
          Length = 805

 Score =  925 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/808 (49%), Positives = 540/808 (66%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+T+++DGS +V D+GRGIP  +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F PS D FS 
Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I LID+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLIDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY
Sbjct: 238 KDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 298 MENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL+ 
Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KDE +L  YL  Q+L   I         +S   L   +    +++ ++  
Sbjct: 538 VKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQGAIGMSGEPLERLVTQYREVEAIVAR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKS-----EKSWHGS 656
               +      + +   +   +   D+           + L  +         E      
Sbjct: 598 LEQRYPTHITNRMLYHPMITNDMLADEGKMKEWIDAFIHELVEMESSGVLYSAEPILDPE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     G+   ++       S   +        ++        +       ++
Sbjct: 658 RKVYLPKITIRKHGIDTNYLFTYDFFQSSDYQRIGKLGAALDGMIEEGGYVQRGERVKEV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD   S  ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD L
Sbjct: 718 GSFLEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805


>gi|304412708|ref|ZP_07394311.1| DNA gyrase, B subunit [Shewanella baltica OS183]
 gi|307305827|ref|ZP_07585573.1| DNA gyrase, B subunit [Shewanella baltica BA175]
 gi|304348918|gb|EFM13333.1| DNA gyrase, B subunit [Shewanella baltica OS183]
 gi|306911320|gb|EFN41746.1| DNA gyrase, B subunit [Shewanella baltica BA175]
          Length = 805

 Score =  925 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/808 (49%), Positives = 540/808 (66%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+T+++DGS +V D+GRGIP  +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F PS D FS 
Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY
Sbjct: 238 KDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 298 MENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL+ 
Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KDE +L  YL  Q+L   I         +S   L   +    +++ ++  
Sbjct: 538 VKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQGAIGMSGEPLERLVTQYREVEAIVAR 597

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKS-----EKSWHGS 656
               +      + +   +   +   D+           + L  +         E      
Sbjct: 598 LEQRYPTHITNRMLYHPMITNDMLADEGKMKEWIDAFIHELVEMESSGVLYSAEPILDPE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                  +     G+   ++       S   +        ++        +       ++
Sbjct: 658 RKVYLPKITIRKHGIDTNYLFTYDFFQSSDYQRIGKLGAALDGMIEEGGYVQRGERVKEV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD   S  ++G+ +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD L
Sbjct: 718 GSFLEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805


>gi|26986758|ref|NP_742183.1| DNA gyrase subunit B [Pseudomonas putida KT2440]
 gi|148545263|ref|YP_001265365.1| DNA gyrase subunit B [Pseudomonas putida F1]
 gi|24981349|gb|AAN65647.1|AE016191_4 DNA gyrase, subunit B [Pseudomonas putida KT2440]
 gi|148509321|gb|ABQ76181.1| DNA gyrase subunit B [Pseudomonas putida F1]
 gi|313496421|gb|ADR57787.1| GyrB [Pseudomonas putida BIRD-1]
          Length = 806

 Score =  925 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/811 (49%), Positives = 546/811 (67%), Gaps = 15/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F PS++
Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR 
Sbjct: 235 TPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGK  QY+KD+E++E+Y+   +L +      +S   +S   L   +++   + K
Sbjct: 535 PLYKVKRGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRSVMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652
            +K     + +   E  V       E   D  +  +  ++   RLN      +A  +   
Sbjct: 595 TLKRLSRLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAQFQARLNSSQKSGLAYNASLR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                N     V+  + G+            S   +       ++         +     
Sbjct: 655 EDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLSSLLGEGAYVQRGER 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  I      LD + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  
Sbjct: 715 RKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIA 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           AD +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 ADQIFNTLMGDAVEPRRDFIESNALSVSNLD 805


>gi|237806780|ref|YP_002891220.1| DNA gyrase, B subunit [Tolumonas auensis DSM 9187]
 gi|237499041|gb|ACQ91634.1| DNA gyrase, B subunit [Tolumonas auensis DSM 9187]
          Length = 805

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/812 (52%), Positives = 541/812 (66%), Gaps = 16/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSENT----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVMDNSIDETLAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I   ++ DGS +V DNGRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 57  CTDIVARIHEDGSVSVRDNGRGIPVDMHKEEGRSAAEVIMTILHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R GNIY+ ++  G  D PL + G     TGTE+ F PS  
Sbjct: 117 HGVGVSVVNALSDKLLLTIQRNGNIYQQTYFLGEPDAPLAIIG-TCEGTGTEIRFWPSLS 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F Y+ L  R RELSFLNS V I LID+R  + RE    Y+GGI AFV YL+++K
Sbjct: 176 IFSDVTFRYEILARRFRELSFLNSGVSIRLIDER--DGREDHFHYEGGIRAFVEYLNQNK 233

Query: 241 KPLMQSPIRIQ-GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ Q          D IS+++AM+WND Y ENV CFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 234 TPIHQKAFYFDLAREDGISVEVAMQWNDAYQENVYCFTNNIPQRDGGTHLAGFRSALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 294 LNTYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P EAKIIV K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 354 MGEKLDEYLLENPGEAKIIVGKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 414 RDPALSELYLVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKMISSQEVGTLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +K+RYH +IIMTDADVDGAHIRTLLLTFF+RQMP +I  G++YI +P
Sbjct: 474 ALGCGIGRDEYNPDKMRYHNVIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KDEESL +Y    +L        DS   IS   L   + +      
Sbjct: 534 PLYKVKKGKQEQYIKDEESLLEYQTTLALDGAELYVNDSAPAISGAQLEKMVLEYRTAQH 593

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----S 652
           LI        +  ++Q +I  V   E   D+    +  ++L + L+       +      
Sbjct: 594 LITRLARRLPEAVLQQLLILPVLTTEALKDEAQAKAWVAQLQHNLDEHGNNGSQYTLSVH 653

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            H         +     GV++ + L    + S   +       +I         L     
Sbjct: 654 RHAEHGVYLPQILLRQHGVEKHYQLGFEFLNSPEYQQIVNIGQQITNLIEPTGFLKRGEK 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              +T     L  +   G++G+ +QRYKGLGEMN  QLWETT++P TR +L+V I D   
Sbjct: 714 VRPVTSFEEALQILLDEGKRGLYIQRYKGLGEMNPEQLWETTMDPMTRRMLQVTIEDGMA 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD VEPRR FI+ N+L    LDI
Sbjct: 774 ADQLFATLMGDNVEPRRAFIESNALKVANLDI 805


>gi|121893|sp|P13364|GYRB_PSEPU RecName: Full=DNA gyrase subunit B
 gi|45694|emb|CAA38447.1| unnamed protein product [Pseudomonas putida]
          Length = 806

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/811 (49%), Positives = 548/811 (67%), Gaps = 15/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDITVIIHTDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F PS++
Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+          R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR 
Sbjct: 235 TPVNSQVFHFSVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N   S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+E++E+Y+   +L +      +S   +S   L + +++   + K
Sbjct: 535 PLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLESLVNEFRSVMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652
            +K     + +   E  V       E   D  +  +  +KL  RLN      +A  +   
Sbjct: 595 TLKRLSRLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAKLQERLNSSQKSGLAYNASLR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                N     V+  + G+            S   +       ++         +     
Sbjct: 655 EDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLSSLLGEGAYVQRGER 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  I      LD + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  
Sbjct: 715 RKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIA 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           AD +F+ LMGD VEPRREFI+ N+L    LD
Sbjct: 775 ADQIFNTLMGDAVEPRREFIESNALSVSNLD 805


>gi|325275335|ref|ZP_08141286.1| DNA gyrase subunit B [Pseudomonas sp. TJI-51]
 gi|324099526|gb|EGB97421.1| DNA gyrase subunit B [Pseudomonas sp. TJI-51]
          Length = 806

 Score =  925 bits (2390), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/811 (49%), Positives = 546/811 (67%), Gaps = 15/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F PS++
Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+          R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR 
Sbjct: 235 TPVNNQVFHFNVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNNYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGK  QY+KD+E++E+Y+   +L +      +S   ++   L N +++   + K
Sbjct: 535 PLYKVKRGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVAGVQLENLVNEFRGVMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652
            +K     + +   E  +       E   D     +   K   RL+      +A ++   
Sbjct: 595 TLKRLSRLYPEDITEHFIYLPEVTVEQLGDHAAMQAWLVKFQARLSNSQKSGLAYQASLR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                N     V+  + G+            S   +        +         +     
Sbjct: 655 EDKERNVWLPEVEVTSHGLASYVTFNRDFFGSNDYRTVVKLGANLSTLLGEGAYVQRGER 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  ++     LD + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  
Sbjct: 715 RKAVSEFKEALDWLMNESTKRHTIQRYKGLGEMNPEQLWETTMDPTVRRMLKVTIEDAIA 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           AD +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 ADQIFNTLMGDAVEPRRDFIESNALSVSNLD 805


>gi|284007066|emb|CBA72341.1| DNA gyrase subunit B [Arsenophonus nasoniae]
          Length = 805

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/808 (50%), Positives = 542/808 (67%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I
Sbjct: 1   MMSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCTDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S +V DNGRGIPTD+H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  IVTIHTDNSISVLDNGRGIPTDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L I+REG I+E ++  G+   PL + G    + GT + F PS + F  
Sbjct: 121 VSVVNALSEKLSLVIRREGKIHEQTYQLGVPQAPLTIAGETE-ERGTYIRFWPSLETFKT 179

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F YD L  RLRELSFLNS + I L DKR  +       Y+GGI+AFV YL R+K P+
Sbjct: 180 VTEFEYDILAKRLRELSFLNSGISIRLFDKRDNKE--DHFHYEGGIKAFVEYLSRNKTPI 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             S       ++ I+++++M+WNDG+ ENV CFTNNIPQ+DGGTHL G R+A+TR + SY
Sbjct: 238 HPSVFYFSAEKEGINVEISMQWNDGFQENVYCFTNNIPQRDGGTHLVGFRTAMTRTLNSY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K    KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++VVE+ +N+ 
Sbjct: 298 MDKEGYQKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTVVETLMNEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP 
Sbjct: 358 LVEYLLENPNDAKIVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPS 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D +D +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY 
Sbjct: 478 GIGRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  QY+KD+E++ +YLI+ +L             +    L   I +     K+IK 
Sbjct: 538 VKKGKQEQYIKDDEAMNEYLISIALDNAALYTSPHAPALKGEPLEKLIIEYNAAQKIIKR 597

Query: 604 FYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656
               +    +   +       +   D+       + L  RL    E         + +  
Sbjct: 598 LERVYPLALLNNLIYQPTLVEDDLKDKAKVEDWINMLVKRLTDNEEHGSTYSYHINENSE 657

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
               + +++    GV   + L+   I              I +       +     +  I
Sbjct: 658 RQLFEPVLRIRTHGVDTDYNLDFDFIHGIEYTRITKIGQLIGDLIEDGAYVERGERRQTI 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +     L+ +    R+G+ +QRYKGLGEMN  QLWETT+NPDTR ++RV + DA   D L
Sbjct: 718 SSFEDALNWLSKESRRGLMVQRYKGLGEMNPEQLWETTMNPDTRHMMRVTVKDAIATDQL 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD VEPRR FI+EN+L +  +DI
Sbjct: 778 FTTLMGDAVEPRRAFIEENALKAENIDI 805


>gi|88798536|ref|ZP_01114120.1| DNA gyrase subunit B [Reinekea sp. MED297]
 gi|88778636|gb|EAR09827.1| DNA gyrase subunit B [Reinekea sp. MED297]
          Length = 804

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/811 (49%), Positives = 548/811 (67%), Gaps = 17/811 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSDN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              ITVT++ + S +V DNGRGIPT++H+EEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 56  CSEITVTIHPNESVSVEDNGRGIPTEIHEEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ LKL I+R G ++E  + +G+   PL V G A + TGT++TFLPSS 
Sbjct: 116 HGVGVSVVNALSAELKLTIRRGGKVHEQDYSHGVPVEPLKVVGDA-DTTGTKITFLPSSG 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   ++YD L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV+YL+R+K
Sbjct: 175 TFANIKYSYDILAKRLRELSFLNSGVAIRLKDERTAQE--DYFHYEGGLKAFVTYLNRNK 232

Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + L +      +   D I +++A++WND Y EN+  +TNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 233 QTLNEVFHFSFEREEDGIGVEVALQWNDSYQENIFSYTNNIPQRDGGTHLAGFRAALTRT 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY+++    KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+  VE  
Sbjct: 293 LNSYIQQENLLKKQKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKPAVEQE 352

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           ++   S +L EHP EAK++V K++DA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E
Sbjct: 353 MSRVFSEYLIEHPNEAKVVVGKMIDAARAREAARKARDMTRRKGALDIAGLPGKLADCQE 412

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAK GR R  QAILPL+GKILNVE+ARFDKML S E+GTLIT
Sbjct: 413 KDPALSELYLVEGDSAGGSAKMGRDRRTQAILPLKGKILNVEKARFDKMLQSAEVGTLIT 472

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ F++ KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI NG +YI +P
Sbjct: 473 ALGCGIGREEFNVEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIENGHVYIAQP 532

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PL+ I +GK   Y+KDE +LE YL++Q+L        ++   I+++ L N +    ++  
Sbjct: 533 PLFKIKKGKQETYIKDEPALESYLLSQALDGTSLYVNETAPAITEHQLENLVSQFNEVHA 592

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKS 652
            I      + K  +++ +       +   DQ         L+     +       +   +
Sbjct: 593 RIDKMSRVYPKDVLQRLIYKPRLTVDMLKDQAAVAEWVDSLSEDFLDVTSGSTVYQIVIT 652

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                +     ++  A G+  ++VL  +   S            + +       +  N  
Sbjct: 653 EDTERHLWLPKIQATAHGLMTEYVLPHAFFGSNDYDAIVSLGEVLMDLIEEGAYIQRNDK 712

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K +I+    ++  +     +G  +QRYKGLGEMN  QLWETT++P+ R +L+V I DA  
Sbjct: 713 KHEISSFEEVIQWLMKEASRGYQIQRYKGLGEMNPDQLWETTMDPEARRMLQVTIEDAIA 772

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           AD +F+ LMGD+VEPRR+FI+ N+L    LD
Sbjct: 773 ADQIFTTLMGDDVEPRRQFIESNALLVSNLD 803


>gi|89092267|ref|ZP_01165221.1| DNA gyrase subunit B [Oceanospirillum sp. MED92]
 gi|89083355|gb|EAR62573.1| DNA gyrase subunit B [Oceanospirillum sp. MED92]
          Length = 808

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/812 (49%), Positives = 536/812 (66%), Gaps = 13/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N  YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSGE-DNQDYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV DNGRGIPTD+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSEIKVIIHPDESITVMDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LK+ I+R G ++E  + +G  + PL V G     +GT V F PS +
Sbjct: 120 HGVGVSVVNALSVKLKMTIRRNGQVHEQVYRHGEPEAPLSVVGETE-TSGTMVRFWPSEE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F +D L  RLRELSFLNS V+I L D+R+    E    Y+GG+ AFV YL+ +K
Sbjct: 179 TFSNVSFKFDILAKRLRELSFLNSGVRIVLKDERTA--VEEVFEYEGGLGAFVEYLNTNK 236

Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + +      +     +++++AM+WND + E++  FTNNIPQ+DGGTHLSG R+ALTR 
Sbjct: 237 TTVNKLFHFTAEHEASGVAVEVAMQWNDSFQESIHSFTNNIPQRDGGTHLSGFRAALTRS 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E    +K  K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VE  
Sbjct: 297 LNNYIESESLNKGGKISTTGDDSREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAVEQT 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L+E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 357 MGERLAEYLQENPQEAKAVVSKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE++LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLIT
Sbjct: 417 KDPALSEIYLVEGDSAGGSAKQGRARKTQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++ +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +P
Sbjct: 477 ALGCGIGREEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQP 536

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I +GK  QY+KD+E+L+ YL+  +L             I    L+  +     + +
Sbjct: 537 PLYKIKKGKQEQYLKDDEALDSYLLQGALDGTTLHVNADAPGIGGEKLQELVYQYRAVIR 596

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSE-----KS 652
            I      +    ++  + +  F  E+   Q        +  + L   ++K+        
Sbjct: 597 TINRMSRVYPYAMLKSLLDTAAFPSENMADQAAVADWCDQFDDALAGFSDKAVSYQCLVE 656

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                +N    V     GV   +VL      S         +  +         L     
Sbjct: 657 EDKEHSNFVAKVVMQQHGVAHDYVLNEEFFASREYTEMAKMAETLSGLLEDGAYLQRGER 716

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
             ++T     L+ +  + R+G  +QRYKGLGEMN  QLWETT++PD+R +L+V I DA  
Sbjct: 717 TKEVTDFEEGLNWLLDLSRRGHYIQRYKGLGEMNPEQLWETTMDPDSRRMLQVTIEDAIA 776

Query: 773 ADDLFSRLMGDEVEPRREFIQENSL-PSALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L  + LD+
Sbjct: 777 ADQLFTTLMGDEVEPRRNFIESNALQVANLDV 808


>gi|239830977|ref|ZP_04679306.1| DNA gyrase, B subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823244|gb|EEQ94812.1| DNA gyrase, B subunit [Ochrobactrum intermedium LMG 3301]
          Length = 826

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/815 (59%), Positives = 622/815 (76%), Gaps = 14/815 (1%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+     +   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 14  MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 73

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 74  ALAGHATLVTVTLNPDGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 133

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG +TGTEV+F
Sbjct: 134 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGGETGTEVSF 193

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS + FS+ +F++DTL+ RLREL+FLNS V+I L D+R  +  E  + Y GG+  FV Y
Sbjct: 194 LPSPETFSMVEFDFDTLERRLRELAFLNSGVRIKLADRRHADLVEHELHYDGGLVEFVKY 253

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D+ KKPL++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A
Sbjct: 254 IDQSKKPLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 313

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+T Y + S  +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 314 LTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 373

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP   K +V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLA
Sbjct: 374 VESLVNEALSTWLEEHPAGGKAVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 432

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G
Sbjct: 433 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 492

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           TLITALGT IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G
Sbjct: 493 TLITALGTSIGKDETHGFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 552

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY ++RGKS QY+K+E + ED+LI   L E       S  V +  DLR+ ++
Sbjct: 553 HIYIAQPPLYKVSRGKSSQYIKNEAAFEDFLIETGLEEATLEMA-SGEVRAGPDLRSVVE 611

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
           DA  + +L+   +  +D+  +EQA I+G+ N +   D     + A  +A RL+ I+E++E
Sbjct: 612 DARTMRQLLGGLHTRYDRRVVEQAAIAGLLNPDASKDNATAQASADIVAKRLDMISEETE 671

Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + W   +  +     +R+ RGV++  VL+ + + S  ++     + R+ E +     L  
Sbjct: 672 RGWTAYVTEDGGYRFERMVRGVKDIAVLDMALLGSADARQIDRVAARLSEVFAEPPVLRR 731

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 ++GP +LLD IF+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+TD
Sbjct: 732 KDKVETLSGPMALLDAIFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVTD 791

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A+ AD LFSRLMGDEVEPRREFIQEN+L    LD+
Sbjct: 792 ATDADSLFSRLMGDEVEPRREFIQENALSVANLDV 826


>gi|49473721|ref|YP_031763.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse]
 gi|49239224|emb|CAF25544.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse]
          Length = 810

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/811 (60%), Positives = 613/811 (75%), Gaps = 9/811 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+ I +    + YDA SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+
Sbjct: 1   MSNEITSPINGNDYDAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A ++ VTL+ DGSC+V DNGRGIPTD+H  EGISAAEVIMT+LHAGGKF+Q SYKV
Sbjct: 61  LAGHATLVNVTLHTDGSCSVRDNGRGIPTDIHPTEGISAAEVIMTQLHAGGKFDQNSYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WL+LRIKR G I+EMSF +G+ D+PL   G    + GTE+ FL
Sbjct: 121 SGGLHGVGVSVVNALSVWLQLRIKRNGKIHEMSFTHGVADSPLKTVGDCDAENGTEIRFL 180

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PSS+ F++ +F+++TL+ RLREL+FLNS V I L+D+R  + R + + Y+GG+  FV Y+
Sbjct: 181 PSSETFTMVEFDFETLERRLRELAFLNSGVHILLVDQRHADVRSVELHYEGGLTEFVKYI 240

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           D+ KK L+  PI I   +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL G RSAL
Sbjct: 241 DQSKKALLDCPIYIASVKDGVSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TRQI  Y E S  +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +V
Sbjct: 301 TRQINGYAESSGIAKKEKINLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ VN+GLSAWLEEHP EAKI+  KV++A+  R+AAR+AR+LTRRKG LDI SLPGKLAD
Sbjct: 361 ENLVNEGLSAWLEEHPSEAKIVTSKVVEAATAREAARKARELTRRKGALDITSLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS  IGT
Sbjct: 421 CQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSDMIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALGT IG+D F  +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G LYI
Sbjct: 481 LITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYI 540

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + RGKS QY+K+E + E++LI+  L E          + +  DLR   +DA  
Sbjct: 541 AQPPLYKVARGKSFQYIKNEAAFEEFLIDTGLEETTLELST-GEIRAGADLRQLAEDARM 599

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWH 654
           + +L+   +  +++  IEQA I G FN ++    E     A  +A+RL+ IA+  E+ W 
Sbjct: 600 LRQLLNGLHTRYNRNIIEQAAIVGAFNPQAFATPERAQKTADNIASRLDLIADDMERGWS 659

Query: 655 GS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           G   ++  +  +RI RGV++   L+   I S  ++     S  + E Y +   L      
Sbjct: 660 GQCTSDGSLWFERILRGVKDVITLDARLINSADARQIDRVSQNLMEIYSSPPLLHRKDKS 719

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            +I GP +LL++IF+ G++GI++QRYKGLGEMNA QLWETTLNPD R+LL+VKI DA+ A
Sbjct: 720 EQIFGPMNLLESIFTNGKRGITLQRYKGLGEMNAEQLWETTLNPDARALLQVKINDATDA 779

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D LFSRLMGDEVEPRR FI++N+L    LDI
Sbjct: 780 DLLFSRLMGDEVEPRRAFIKDNALSVANLDI 810


>gi|78484358|ref|YP_390283.1| DNA gyrase, B subunit [Thiomicrospira crunogena XCL-2]
 gi|78362644|gb|ABB40609.1| DNA gyrase subunit B [Thiomicrospira crunogena XCL-2]
          Length = 813

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/812 (49%), Positives = 553/812 (68%), Gaps = 13/812 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN IDE+L G+ 
Sbjct: 5   AENPIQPEYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNGIDEALAGHC 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D + VT++ DGS +V+DNGRGIP  LH+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLH
Sbjct: 65  DKVVVTIHTDGSVSVTDNGRGIPVGLHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L IKREG++++ ++ +G+ D PL       ++TGTE+ FLPS + 
Sbjct: 125 GVGVSVVNALSEELHLTIKREGHVWKQTYRHGVPDEPLKAVSET-DETGTEIRFLPSRET 183

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  +F++D L  RLRELSFLNS V I L+DKR  + R     ++GGI AFV Y++ +K 
Sbjct: 184 FTQTEFSFDYLLKRLRELSFLNSGVHIELLDKR--DDRHEVFEFEGGIRAFVDYINANKT 241

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ Q        RD+I++++AM+W++ Y E++ CFTNNIPQ+DGGTHLSG R+ALTR + 
Sbjct: 242 PINQEAFYFSTVRDDITVEVAMQWSEAYQESIFCFTNNIPQRDGGTHLSGFRAALTRTLN 301

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y EK   +KK K SV GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N
Sbjct: 302 QYAEKEGLTKKYKMSVSGDDAREGLAAVISVKVPDPKFSSQTKDKLVSSEVKTAVETAMN 361

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ +L E+P +A+ +  K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+D
Sbjct: 362 EKLAEYLLENPKDAQSVFAKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 421

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P +SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKML+S E+GTLITAL
Sbjct: 422 PARSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLASAEVGTLITAL 481

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG + ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPL
Sbjct: 482 GCGIGHEEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPL 541

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK   Y+KD+  LE+YL+  +L +           I    L       L+ +++I
Sbjct: 542 YKVKKGKQEAYLKDDAELENYLLQSALDQAALWTSKETPAIQGVALETLAKSFLQTNRII 601

Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSIN- 658
                   KTF+E  +     + E  +D +      +    RL  I E  +  +   +  
Sbjct: 602 DRLARRFSKTFLELMLDLSPIHVETLNDYDACEKWIADALPRLRAIGEIQKVEYQLQVEP 661

Query: 659 ------NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                    I +++   G     + +     +    +    + +++        +     
Sbjct: 662 ALQGETQFQIRLQQREHGTLTSQIYDEDFFAAAEYDHIAKVAKQLKGLLSETAYIQRGEK 721

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  ++     +D + S  ++G S+QRYKGLGEMN  QLWETT+N + R LL+V I+DA  
Sbjct: 722 QENVSSFKEAMDWLLSEAKRGQSIQRYKGLGEMNPEQLWETTMNAEARRLLQVTISDAIT 781

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 782 ADQVFTTLMGDEVEPRRNFIESNALKAENIDV 813


>gi|146305046|ref|YP_001185511.1| DNA gyrase subunit B [Pseudomonas mendocina ymp]
 gi|145573247|gb|ABP82779.1| DNA gyrase subunit B [Pseudomonas mendocina ymp]
          Length = 806

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/812 (49%), Positives = 547/812 (67%), Gaps = 17/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +T++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 58  CSEIVITIHPDESISVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R G ++E  + +G+   PL   G   + TGTE+ F  S++
Sbjct: 118 HGVGVSVVNALSEELRLTIRRAGKVWEQIYHHGVPQAPLATVGDT-DGTGTEIHFKASAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV YL+ +K
Sbjct: 177 TFSNIHFSWDILAKRLRELSFLNSGVGILLRDERSGKE--ELFKYEGGLKAFVEYLNTNK 234

Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + Q     IQ   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 235 NVVNQVFHFNIQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRH 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNNYIEQEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLIT
Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+E++++Y+   +L +      ++   +S   L   + +   + K
Sbjct: 535 PLYKVKKGKQEQYIKDDEAMDEYMTQSALEDASLHVNENAPGLSGGALEKLVGEYRGVMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEKSWHGSI 657
            +      + K   E  V       E   +     +   + + RL  + EKS +++  S+
Sbjct: 595 TLDRLSRVYPKEITEHFVYLPRIGLEQLADHAGMQAWLEQFSARLKTM-EKSGQTYTASL 653

Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
                       V+  A G+            S   K      +++         +    
Sbjct: 654 REDRERHVWLPEVEVKAHGLSSYTTFNRDFFASNDYKTVTALGDQLNNLLEDSAYVQRGE 713

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            K  +      LD + +   K  S+QRYKGLGEMN  QLWETT++P+ R +L+V I DA 
Sbjct: 714 RKKPVATFKEALDWLMAESTKRHSIQRYKGLGEMNPDQLWETTMDPEVRRMLKVTIEDAI 773

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            AD +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 774 AADQIFNTLMGDAVEPRRDFIESNALAVSNLD 805


>gi|154250463|ref|YP_001411287.1| DNA gyrase subunit B [Parvibaculum lavamentivorans DS-1]
 gi|154154413|gb|ABS61630.1| DNA gyrase, B subunit [Parvibaculum lavamentivorans DS-1]
          Length = 814

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/815 (57%), Positives = 598/815 (73%), Gaps = 13/815 (1%)

Query: 1   MSD--NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+   +     Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DN+IDE+L 
Sbjct: 1   MTTPADDTPEEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNSIDEALA 60

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D + V LN DGS TV DNGRGIP ++HK EG+SAAEVIMT+LHAGGKF+Q SYKVSG
Sbjct: 61  GYCDAVNVRLNADGSVTVMDNGRGIPVEIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSG 120

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTE 172
           GLHGVGVSVVNALS WL++RI R G  + + F +G+ D PL  TG A         TGTE
Sbjct: 121 GLHGVGVSVVNALSDWLEMRIWRAGKEHRIRFQHGVPDAPLEATGPAPIGADGKPVTGTE 180

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           +TF PSS+ F+  +F++ TL+HRLREL+FLNS V+I+L D R  EP+E+ + Y+GG+EAF
Sbjct: 181 ITFHPSSETFTQTEFDFATLEHRLRELAFLNSGVKINLTDHRGVEPKEVKLMYEGGLEAF 240

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +LDR K PL+Q PI I+  R+ I++++AM WND YHENVLCFTNNIPQ+DGGTHL+G 
Sbjct: 241 VRFLDRTKAPLIQKPIAIRAEREGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHLAGF 300

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR I SY  +S  +KK+K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 301 RGALTRVINSYANESGIAKKEKVSLTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 360

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R VVE  VND LS WLEEHP EA+ +V KV++A+  R+AAR+AR+LTRRKG LD++SLPG
Sbjct: 361 RPVVEGLVNDALSTWLEEHPAEARQVVTKVVEAAAAREAARKARELTRRKGALDVSSLPG 420

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP KSELF+VEGDSAGGSAKQ R R NQA+LPLRGKILNVERARFDKMLSS 
Sbjct: 421 KLADCQERDPAKSELFIVEGDSAGGSAKQARDRSNQAVLPLRGKILNVERARFDKMLSSN 480

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EIGTLITALG GIG+D F+I+KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP +I  G
Sbjct: 481 EIGTLITALGAGIGRDDFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEVIERG 540

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            LYI +PPLY + RG S  Y+K+E++L DYLI+  L + +    D     +  DL + + 
Sbjct: 541 HLYIAQPPLYKVRRGTSETYLKNEKALGDYLISTGLEDMVLTLHD-GSQRAGPDLSDIVA 599

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
            A  +  +++     +    +EQA I+G  N +  ++ E     A+ +A RL+ ++E++E
Sbjct: 600 RARSVRAVLEGLPTKYPHFVVEQAAIAGALNPKALAEPEHAREAAAYIARRLDLLSEETE 659

Query: 651 KSWHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + W G    +  +   R  RGV+E+  ++G  I S  ++    ++  ++E Y+   +L  
Sbjct: 660 RGWTGETTQDGGLRFAREVRGVREEVSIDGPLIASADARRLDSYTEHLQEVYVKAATLRR 719

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             D   I  P  LLD + + G KG ++QRYKGLGEMN  QLWETTL+ D RSLL+VKI +
Sbjct: 720 KDDSHIIRSPSQLLDAVMAAGTKGNTVQRYKGLGEMNPGQLWETTLDRDARSLLQVKIRE 779

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
              ADDLF +LMGD VEPRR+FI+EN+L    LDI
Sbjct: 780 LDDADDLFVKLMGDVVEPRRDFIRENALNVANLDI 814


>gi|296445647|ref|ZP_06887602.1| DNA gyrase, B subunit [Methylosinus trichosporium OB3b]
 gi|296256892|gb|EFH03964.1| DNA gyrase, B subunit [Methylosinus trichosporium OB3b]
          Length = 809

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/814 (57%), Positives = 608/814 (74%), Gaps = 16/814 (1%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS++    +    Y ADSI++L+GLDAV+KRP MYIGDTD  +GLHHM+YEV+DNAIDE+
Sbjct: 1   MSNDADDAVPTPEYGADSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A ++TVTL+ DGSCTV+DNGRG+PT +HKEEG+SAAEVIMT+LHAGGKF+Q SYKV
Sbjct: 61  LAGHASLVTVTLDADGSCTVTDNGRGVPTGIHKEEGVSAAEVIMTQLHAGGKFDQNSYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-----NDTGT 171
           SGGLHGVGVSVVNALS WLKLRI ++G  + M F NG    PL V G A         GT
Sbjct: 121 SGGLHGVGVSVVNALSVWLKLRIWQDGREHFMEFANGDAVAPLAVVGDAPIEDGKPKRGT 180

Query: 172 EVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           +VTFLPS   F    +F+Y T++HRLREL+FLNS V+I L D R  E +   ++Y+GG+E
Sbjct: 181 QVTFLPSLKTFKTVVEFDYATIEHRLRELAFLNSGVRIVLTDARHAEQKREELYYEGGLE 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR K PL+  PI I G R++I++++A+ WND YHENVL FTNNIPQ+DGGTHL+
Sbjct: 241 AFVRYLDRAKTPLIAQPIMIHGQREHINVEVALWWNDSYHENVLVFTNNIPQRDGGTHLA 300

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ LTRQIT Y E+S  +K++K  + GDDCREG T V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 301 GFRAGLTRQITGYAERSGLAKREKVDLTGDDCREGLTCVVSVKVPDPKFSSQTKDKLVSS 360

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE+ VN+ L  WLEEHP EAK +V KV +A++ R+AAR+AR+LTRRKG LD+A+L
Sbjct: 361 EVRPAVENIVNELLDQWLEEHPQEAKAVVSKVCEAAVAREAARKARELTRRKGALDVANL 420

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP K+ELF+VEGDSAGG+AKQGR+RE QA+LPLRGKILNVERARFDKMLS
Sbjct: 421 PGKLADCQERDPAKAELFIVEGDSAGGTAKQGRNREFQAVLPLRGKILNVERARFDKMLS 480

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++IGTLITALGTGIG+D F+ +KLRYHKIIIMTDADVDGAHIRTL+LTFF+RQMP LI 
Sbjct: 481 SEQIGTLITALGTGIGRDEFNADKLRYHKIIIMTDADVDGAHIRTLILTFFYRQMPQLIE 540

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G ++I + PLY +T+ KS QY+KDE +LEDYLI+  L   +   C +    +  DLR  
Sbjct: 541 RGHVFIAQAPLYKVTKAKSTQYLKDERALEDYLIDSVLDGAVL-RCGTGEERAGKDLRQA 599

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           ++DA     ++   +  +D++ +EQ  ++G      D       A+ +A RLN IAE++E
Sbjct: 600 LEDARSFRTIMNGLHSRYDRSVVEQTALAGALQAPPDDAK----ANDVAERLNAIAEETE 655

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           + W G       + +R  RGV +  +L+ + + S  ++  +  +  + E +    SL   
Sbjct: 656 RGWTGETREGGYVFRRTLRGVAQAVILDAALLASSEARKLQERAESLREIFAGAASLARR 715

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           GD+  ++GP +L D   ++GRKG+++QRYKGLGEMNA QLWETTL+ + RSLL+V++ +A
Sbjct: 716 GDETPLSGPLALYDATAALGRKGLAIQRYKGLGEMNAEQLWETTLDREVRSLLQVRVKEA 775

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +A+D+F +LMGD VEPRREFIQEN+L    LD+
Sbjct: 776 VEAEDIFVKLMGDVVEPRREFIQENALNVANLDV 809


>gi|16124415|ref|NP_418979.1| DNA gyrase subunit B [Caulobacter crescentus CB15]
 gi|239977278|sp|B8GXQ0|GYRB_CAUCN RecName: Full=DNA gyrase subunit B
 gi|239977279|sp|P0CAX1|GYRB_CAUCR RecName: Full=DNA gyrase subunit B
 gi|13421273|gb|AAK22147.1| DNA gyrase subunit B [Caulobacter crescentus CB15]
 gi|220962270|gb|ACL93626.1| DNA gyrase subunit B [Caulobacter crescentus NA1000]
          Length = 805

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/813 (55%), Positives = 578/813 (71%), Gaps = 18/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+
Sbjct: 1   MTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V LN DGS TV+D+GRGIP D+H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGL
Sbjct: 61  ATKVQVILNADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND----------TG 170
           HGVGVSVVNALS WL+L I R G +++M F  G     L VTG +             TG
Sbjct: 121 HGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTG 180

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTF PS D F+  +F+  TL+HRLREL+FLNS V I   D R  EP E  +FY+GGIE
Sbjct: 181 TEVTFFPSKDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIE 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +LD+ K PL+++PI ++G +D + IDLA+ WND YHE +LCFTNNIPQ+DGGTHLS
Sbjct: 241 AFVRHLDKAKTPLLKAPIAVKGVKDKVEIDLALWWNDSYHEQMLCFTNNIPQRDGGTHLS 300

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
             R+ALTR ITSY E S   KK+K S+ G+D REG T VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 301 AFRAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSS 360

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  V++GLS W EEHP EAK IV K+ +A+  R+AAR+AR+LTRRK  LDI SL
Sbjct: 361 EVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSL 420

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSE+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNVERARFDKMLS
Sbjct: 421 PGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLS 480

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S +IGTLITALG GIG+D F+ +K+RYHKI++MTDADVDGAHIRTLLLTFF+RQMP LI 
Sbjct: 481 SDQIGTLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIE 540

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI +PPLY  ++GKS +Y+KD+  ++ +L+++ +         S   ++  DL   
Sbjct: 541 RGYIYIAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDGAELDLA-SGERMTGQDLLAL 599

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           +         I         T IEQA +SG+     +       A+  A RL+  AE+ +
Sbjct: 600 VQTCRSAKANIDRLAARAPATAIEQAALSGLLGESPN-------AAAAATRLDLYAEEGD 652

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             W G   ++  +  R+ RGV E+ VL+   + +  ++     + ++ E +         
Sbjct: 653 GPWSGERGDTGFVFSRVRRGVSERVVLDDVLLHAADARRLAERAVKLTEIFSGRAIFRRK 712

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
                + GP  L++ +   GRKG+++QRYKGLGEMN  QLWETTL+ + R+LL+V++  A
Sbjct: 713 DKSTTVRGPLDLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNHA 772

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             ADD+FSRLMGD VEPRREFIQEN+L + +D+
Sbjct: 773 DDADDMFSRLMGDLVEPRREFIQENALDAEVDV 805


>gi|91774359|ref|YP_544115.1| DNA gyrase subunit B [Methylobacillus flagellatus KT]
 gi|91708346|gb|ABE48274.1| DNA gyrase subunit B [Methylobacillus flagellatus KT]
          Length = 798

 Score =  922 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/801 (50%), Positives = 547/801 (68%), Gaps = 9/801 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y++DSI+IL+GLDAV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+ D I VT
Sbjct: 2   TDYNSDSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVT 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHK----EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           ++ D S +VSDNGRGIPTD+ +    E   SAAE++MT LHAGGKF+Q SYKVSGGLHGV
Sbjct: 62  IHPDNSISVSDNGRGIPTDIKEDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS WLKLRI R G +++M F  G+  +PL +TG      GTEV FL S++ F+
Sbjct: 122 GVSVVNALSDWLKLRIFRNGQVHQMEFRRGVAVSPLTITG-TTERRGTEVHFLASTETFT 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+++ L  R+RELSFLN+ V+I LID+R+ +       + GG+  FV Y++R K  L
Sbjct: 181 NVEFHFEILAKRIRELSFLNNGVKIELIDQRNGKS--ENFAHSGGVRGFVEYMNRSKTVL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              P    G +D I ++++M+WND Y ENVLCFTNNIPQ+DGGTHL+GLR+A+TR + SY
Sbjct: 239 HPKPFYASGEKDGIIVEVSMQWNDSYSENVLCFTNNIPQRDGGTHLTGLRTAMTRTLNSY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E++  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSEV+ VV+  V+  
Sbjct: 299 IEQNDLAKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPVVQEVVSAK 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P EAKII  K++DA+  RDAAR+AR++TRRKG +D   LPGKLADC E+DP 
Sbjct: 359 LAEFLLENPNEAKIICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLADCQEKDPA 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDK+LSSQEI TLITALGT
Sbjct: 419 LSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIATLITALGT 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+  F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM  L+  G +YI +PPLY 
Sbjct: 479 GIGKADFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMGELVERGHVYIAQPPLYK 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +G+  +Y+KDE+ L+ YL+  +L     L       IS   L       +  + +I+ 
Sbjct: 539 VKQGRDERYLKDEQELDQYLLQSALKGAELLKQADGETISGEALAAIAKQMVLTEAIIRR 598

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
             P +D++ +   +  G    +  +    + A+KL   L     +   + +    +  + 
Sbjct: 599 LSPLYDESILRALISLGKLELD-TETQAEATAAKLRALLGHTGSEVLVTQNQENGDYRLE 657

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           + +   G  +  V++   I S   +     S  ++       ++     +  +      L
Sbjct: 658 INKYIHGNLQASVIDSDFINSGDYQQILATSLTLQGLVGEGATIKRGEKQQPVNSFKEAL 717

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D + S  + G+++QRYKGLGEMN  QLWETT++P  R LLRV+I DA  AD++F+ LMGD
Sbjct: 718 DWLMSEAKHGLNIQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIDDAIAADEIFTTLMGD 777

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +VEPRR FI+ N+L    LD+
Sbjct: 778 QVEPRRAFIEGNALGVSNLDV 798


>gi|304570783|ref|YP_002515534.2| DNA gyrase subunit B [Caulobacter crescentus NA1000]
          Length = 821

 Score =  922 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/813 (55%), Positives = 578/813 (71%), Gaps = 18/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+
Sbjct: 17  MTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 76

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V LN DGS TV+D+GRGIP D+H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGL
Sbjct: 77  ATKVQVILNADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 136

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND----------TG 170
           HGVGVSVVNALS WL+L I R G +++M F  G     L VTG +             TG
Sbjct: 137 HGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTG 196

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTF PS D F+  +F+  TL+HRLREL+FLNS V I   D R  EP E  +FY+GGIE
Sbjct: 197 TEVTFFPSKDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIE 256

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +LD+ K PL+++PI ++G +D + IDLA+ WND YHE +LCFTNNIPQ+DGGTHLS
Sbjct: 257 AFVRHLDKAKTPLLKAPIAVKGVKDKVEIDLALWWNDSYHEQMLCFTNNIPQRDGGTHLS 316

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
             R+ALTR ITSY E S   KK+K S+ G+D REG T VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 317 AFRAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSS 376

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  V++GLS W EEHP EAK IV K+ +A+  R+AAR+AR+LTRRK  LDI SL
Sbjct: 377 EVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSL 436

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSE+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNVERARFDKMLS
Sbjct: 437 PGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLS 496

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S +IGTLITALG GIG+D F+ +K+RYHKI++MTDADVDGAHIRTLLLTFF+RQMP LI 
Sbjct: 497 SDQIGTLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIE 556

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI +PPLY  ++GKS +Y+KD+  ++ +L+++ +         S   ++  DL   
Sbjct: 557 RGYIYIAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDGAELDLA-SGERMTGQDLLAL 615

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           +         I         T IEQA +SG+     +       A+  A RL+  AE+ +
Sbjct: 616 VQTCRSAKANIDRLAARAPATAIEQAALSGLLGESPN-------AAAAATRLDLYAEEGD 668

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             W G   ++  +  R+ RGV E+ VL+   + +  ++     + ++ E +         
Sbjct: 669 GPWSGERGDTGFVFSRVRRGVSERVVLDDVLLHAADARRLAERAVKLTEIFSGRAIFRRK 728

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
                + GP  L++ +   GRKG+++QRYKGLGEMN  QLWETTL+ + R+LL+V++  A
Sbjct: 729 DKSTTVRGPLDLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNHA 788

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
             ADD+FSRLMGD VEPRREFIQEN+L + +D+
Sbjct: 789 DDADDMFSRLMGDLVEPRREFIQENALDAEVDV 821


>gi|167031027|ref|YP_001666258.1| DNA gyrase subunit B [Pseudomonas putida GB-1]
 gi|166857515|gb|ABY95922.1| DNA gyrase, B subunit [Pseudomonas putida GB-1]
          Length = 806

 Score =  922 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/811 (49%), Positives = 547/811 (67%), Gaps = 15/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDITVIIHTDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F PS++
Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR 
Sbjct: 235 TPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+E++E+Y+   +L +      +S   +S   L   +++   + K
Sbjct: 535 PLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRSVMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652
            +K     + +   E  +       E   D  +  +  +K   RLN      +  K+   
Sbjct: 595 TLKRLSRLYPEELTEHFIYLPEVTLEQLGDHAVMQAWLAKFQERLNSSQKSGLVYKASLR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                N     V+  + G+            S   +      +++         +     
Sbjct: 655 EDKERNVWLPEVEVTSHGLASYVTFNRDFFGSNDYRTVVNIGSKLSSLLGEGAYVQRGER 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  I      LD + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  
Sbjct: 715 RKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIA 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           AD +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 ADQIFNTLMGDAVEPRRDFIESNALSVSNLD 805


>gi|224827188|ref|ZP_03700283.1| DNA gyrase, B subunit [Lutiella nitroferrum 2002]
 gi|224600581|gb|EEG06769.1| DNA gyrase, B subunit [Lutiella nitroferrum 2002]
          Length = 796

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/806 (50%), Positives = 539/806 (66%), Gaps = 17/806 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y ADSI++LKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L G+AD I
Sbjct: 1   MSEQEYGADSIKVLKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHADTI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N D S +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF+  SYK+SGGLHGVG
Sbjct: 61  KVTINPDNSISVEDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDSNSYKISGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS WL+L+I R+G ++EM F  G    PL VTG +    GTEVTF  S + F  
Sbjct: 121 VSVVNALSDWLRLKIWRDGKVHEMEFRRGEAVAPLTVTGHSTY-RGTEVTFHASEETFGK 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F++D L  R+RELSFLN  V I+LIDKR+ +       + GG+  FV Y++R+K  L 
Sbjct: 180 IEFHFDILAKRIRELSFLNQGVAITLIDKRTGKE--ENFAFSGGVAGFVEYMNRNKTALH 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                  G ++ +++++AM+WND Y E+V CFTNNIPQ+DGG+HL+ LR  +TR +  Y+
Sbjct: 238 PKVFHAIGEKEGMTVEVAMQWNDSYQESVQCFTNNIPQRDGGSHLTALRQVMTRTLNGYI 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+S  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   ++D L
Sbjct: 298 EQSDTAKKAKVDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVISDAL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
            ++L E+P +AKIIV K++DA+  R+AAR+AR++TRRKG++D   LPGKLADC E+DP  
Sbjct: 358 KSFLLENPNDAKIIVGKIVDAARAREAARKAREITRRKGIMDGLGLPGKLADCQEKDPAM 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKML+SQE+ TLITALG G
Sbjct: 418 SELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLASQEVATLITALGCG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQ P L+  G +YI +PPLY  
Sbjct: 478 IGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQTPELVERGHIYIAQPPLYKA 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK  +Y+KD+  L+ YL+  +L +   +  + +  +S + L       L    +I+  
Sbjct: 538 KHGKQERYLKDDYELDQYLLQLALEKAELMPAEGEAALSGDTLAEVARQFLLARAVIERE 597

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN------RLNFIAEKSEKSWHGSIN 658
               D   ++  +  G  + +++     ++A   A       RL+ + ++    W     
Sbjct: 598 SRVVDPLVLQAMLRVGRLSLDTEHAARDAVAVLTAALPAEFIRLDLLHDEKNDGWM---- 653

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
              I + R   G     VL+   + S          + ++       ++        +  
Sbjct: 654 ---IKITRKLHGNVMVTVLDQDFLDSGDYAELAKTGDLLKGLLREGATVKRGETVKPVAD 710

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD + +  RKG+++QRYKGLGEMN  QLWETT++P  R LL+VKI D   ADD+F+
Sbjct: 711 FGEALDWLLAEVRKGMNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVKIEDVMGADDVFT 770

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR FI+ N+L +  +D+
Sbjct: 771 TLMGDNVEPRRAFIEGNALIARNIDV 796


>gi|104779320|ref|YP_605818.1| DNA gyrase subunit B [Pseudomonas entomophila L48]
 gi|95108307|emb|CAK13001.1| DNA gyrase, subunit B [Pseudomonas entomophila L48]
          Length = 806

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/811 (49%), Positives = 545/811 (67%), Gaps = 15/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDITVIIHTDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F PS++
Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR 
Sbjct: 235 TPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+E++E+Y+   +L +      +S   +S   L   +++   + K
Sbjct: 535 PLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRTVMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652
            +K     + +   E  +       E   +        SK   RLN      ++  +   
Sbjct: 595 TLKRLSRLYPEELTEHFIYLPEVTLEQLANHATMQGWLSKFQERLNNSQKSGLSYVASLR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                N     V+  + G+            S   +       ++         +     
Sbjct: 655 EDKERNIWLPEVEITSHGLASYVTFNREFFGSNDYRSVVNLGAKLGTLLGEGAYVQRGER 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  +T     LD + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  
Sbjct: 715 RKAVTEFKEGLDWLMNESTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIA 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           AD LF+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 ADQLFNTLMGDAVEPRRDFIESNALSVSNLD 805


>gi|221135258|ref|ZP_03561561.1| DNA gyrase subunit B [Glaciecola sp. HTCC2999]
          Length = 808

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/814 (50%), Positives = 555/814 (68%), Gaps = 17/814 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSE---ENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + ++ DGS  VSD+GRGIPT++H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CSDIKIKIHTDGSVAVSDDGRGIPTEIHAEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+LRIKR G ++E  +I+G+   PL V G     TGTE+ F PS D
Sbjct: 118 HGVGVSVVNALSHKLRLRIKRLGKVHEQEYIHGVPSAPLAVVGDTS-STGTEIRFWPSED 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I L D+R  +       Y+GGI+AFV YL+++K
Sbjct: 177 TFTNIEFHYDVLAKRLRELSFLNSGVSIILEDERDGKR--DHFKYEGGIQAFVEYLNQNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ Q P +    R++ IS++++M+WND + EN+ CFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 235 TPVHQKPFQFNVEREDGISVEVSMQWNDSFQENIFCFTNNIPQRDGGTHLAGFRSALTRT 294

Query: 300 ITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +++EK   +KK+K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 295 LNTFMEKEGFNKKNKNATNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVE 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 355 SAMGESLTEFLLENPADAKVIVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 414

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 415 QEKDPAFSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 474

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALG GIG+D ++  KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI 
Sbjct: 475 ITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIA 534

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY I +GK  QY+KD+++L  YL + ++        +    I+   L N +      
Sbjct: 535 QPPLYKIKKGKQEQYLKDDDALNAYLTSIAVDNSSLYTEEGAPGITGVALENLVLQYQAA 594

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESD-------QEINVSLASKLANRLNFIAEKSE 650
           DK+I   +       + Q V S     E         Q  +  +A   ++  +       
Sbjct: 595 DKMIARLHRIMPIDILNQLVYSDTLAVEDFTDEAKLTQFTDKFVAQMTSDESDGATYLGN 654

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
                 IN   I +     G+   + ++   + S   +     ++ I         +   
Sbjct: 655 VIKDEEINRYYINITMRMHGIDYDYHIDSDFVASTEYQKIAALNHAINNMMGEGAYIQRG 714

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             +  +      L+ +    ++G  +QRYKGLGEMN  QLWETT++P++R +L+VKI DA
Sbjct: 715 ERRQTVESFKEALEWLMHEAKRGQYIQRYKGLGEMNPDQLWETTMDPNSRRMLQVKIEDA 774

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             AD LF+ LMGD+VEPRR FI+ N+L    LD+
Sbjct: 775 IGADQLFTTLMGDQVEPRRNFIEANALNVENLDV 808


>gi|115522035|ref|YP_778946.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisA53]
 gi|115515982|gb|ABJ03966.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisA53]
          Length = 813

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/805 (58%), Positives = 596/805 (74%), Gaps = 6/805 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S+      Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 12  SEPAAPIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 71

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + V LN DGS TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 72  TRVEVVLNADGSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L+LR+ R G  + + F +G    PLVV G +    GTEVTFL S + 
Sbjct: 132 GVGVSVVNALSSKLQLRVWRNGKEHFIEFAHGDAVAPLVVVGDSNGKRGTEVTFLASPET 191

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  ++++ TL+HRLREL+FLNS V I L D R    +   M Y+GG+  FV YLDR+KK
Sbjct: 192 FTHIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVEKREEMRYEGGVVEFVKYLDRNKK 251

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            ++ +PI I    + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ 
Sbjct: 252 AMVPAPIMIAAELNGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVN 311

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y E    +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N
Sbjct: 312 GYAE--GIAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLN 369

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+AW EEHP EAK IV KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERD
Sbjct: 370 EALAAWFEEHPSEAKTIVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCQERD 429

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKML S++IGTLITAL
Sbjct: 430 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLGSEQIGTLITAL 489

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D FD+ KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMPSLI  GFLYI +PPL
Sbjct: 490 GTGIGRDDFDLAKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPSLIEGGFLYIAQPPL 549

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +TRGKS QY+KDE +LEDYLI   L  +      S       DL   ++DA  I   +
Sbjct: 550 YKVTRGKSEQYLKDERALEDYLIATGLD-DCAFKLASGEERGGRDLLALVEDARAIRGTL 608

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSI-N 658
            + +  ++++ +EQA I+GV N     ++    + A  +A RL+ +A++ E+ W G    
Sbjct: 609 HNLHSRYNRSVVEQAAIAGVLNPRITGDLATANAAADYIARRLDALADEVERGWVGRFAE 668

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                 +R  RGV++  +++ + + S  ++    ++ R++E Y    +L     +  I G
Sbjct: 669 GEGFFFERTVRGVKDVAMIDDALLGSADARKLDEYAARLQEAYPRPGTLRRKDTETAIHG 728

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P SL + +   GRKG+++QRYKGLGEMN SQLWETTL+ + RSLL+VK+ +  +ADD+F+
Sbjct: 729 PVSLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFT 788

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
           +LMGD VEPRR+FIQENSL + +D+
Sbjct: 789 KLMGDVVEPRRDFIQENSLSANVDV 813


>gi|161594063|ref|NP_899673.2| DNA gyrase subunit B [Chromobacterium violaceum ATCC 12472]
          Length = 796

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/800 (50%), Positives = 535/800 (66%), Gaps = 5/800 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y ADSI++LKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L G+AD I
Sbjct: 1   MSEQEYGADSIKVLKGLDAVRKRPGMYIGDTQDGTGLHHMVFEVLDNAIDEALAGHADTI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N D S +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF+  SYK+SGGLHGVG
Sbjct: 61  KVTINPDNSVSVEDNGRGIPTDIHPEEGRSAAEVIMTILHAGGKFDSNSYKISGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS WLKL+I R+G ++EM F  G    PL VTG   +  GTEVTF  S + F  
Sbjct: 121 VSVVNALSDWLKLKIWRDGKVHEMEFRRGDAVAPLTVTGHTSH-RGTEVTFFASVETFGH 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            ++++D L  R+RELSFLN  V I LIDKRS +       + GG+  FV Y++R+K  L 
Sbjct: 180 IEYHFDILAKRIRELSFLNQGVGIQLIDKRSGKE--ENFAFSGGVAGFVEYMNRNKTVLH 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                  G +D +S+++AM+WND Y E+V CFTNNIPQ+DGGTH++ LR  +TR +  ++
Sbjct: 238 PKVFYGIGEKDGMSVEVAMQWNDSYQESVQCFTNNIPQRDGGTHMTALRQVMTRTLNQFI 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+S  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +++ L
Sbjct: 298 EESEAAKKAKVDTTGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVISEAL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P +AKII  K+++A+  R+AAR+AR++TRRKGV+D   LPGKLADC E+DP  
Sbjct: 358 KTYLLENPNDAKIICGKIVEAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPSL 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKML SQE+ TLITA+G G
Sbjct: 418 CELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLQSQEVATLITAMGCG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM  L+  G +YI +PPLY  
Sbjct: 478 IGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIYIAQPPLYKA 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK  +Y+KD+  L  YL+  +L +   +  + +  +S   L       L    +++  
Sbjct: 538 KHGKQERYLKDDGELNQYLLQLALEKAELIPAEGEAPLSGETLGEIARQFLLARAVMERE 597

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
               D   +E  + +G  + ES Q+ + ++A  L   L+    + +       +   + +
Sbjct: 598 SRVIDPLVLEAMLKTGPLSLESQQQADATVAE-LNKHLSADTIELQLLRDEKNDGHLVKI 656

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
            R   G     VL+ + + S      +   + +         +        +      LD
Sbjct: 657 IRKLHGNVLVTVLDQNFLDSGDYAELKKTGSLLGGLLRQGAHVKRGETVKPVAEFGEALD 716

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +  +KG+++QRYKGLGEMN  QLWETT++P  R LL+V+I D   ADD+F+ LMGDE
Sbjct: 717 WLLAEVKKGMNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDVMGADDVFTTLMGDE 776

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR+FI+ N+L +  +D+
Sbjct: 777 VEPRRQFIEGNALIARNIDV 796


>gi|153007484|ref|YP_001368699.1| DNA gyrase subunit B [Ochrobactrum anthropi ATCC 49188]
 gi|151559372|gb|ABS12870.1| DNA gyrase, B subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 807

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/808 (59%), Positives = 617/808 (76%), Gaps = 9/808 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A 
Sbjct: 2   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 61

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           ++TV LN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 62  LVTVALNPDGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 121

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG +TGTEV+FLPS D F
Sbjct: 122 VGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGAETGTEVSFLPSPDTF 181

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S+ +F++DTL+ RLREL+FLNS V+I L D+R  +  E  + Y GG+  FV Y+D+ KK 
Sbjct: 182 SMVEFDFDTLERRLRELAFLNSGVRIKLTDRRHADVVEHELHYDGGLVEFVKYIDQSKKS 241

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L+  PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQ+T 
Sbjct: 242 LLDEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTG 301

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y + S  +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+
Sbjct: 302 YADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNE 361

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLADC ERDP
Sbjct: 362 ALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDP 420

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GTLITALG
Sbjct: 421 AKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGTLITALG 480

Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           T IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G +YI +P
Sbjct: 481 TSIGKDETHGFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHIYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY ++RGKS QY+K+E + ED+LI   L E       S  V +  DLR+ ++DA  + +
Sbjct: 541 PLYKVSRGKSSQYIKNEAAFEDFLIETGLEEATLEMA-SGEVRAGTDLRSVVEDARTMRQ 599

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
           L+   +  +D+  +EQA I+G+ + +   D       A  +A RL+ I+E++E+ W   +
Sbjct: 600 LLAGLHTRYDRRVVEQAAIAGLLHPDASRDNATAQRSADTVAKRLDMISEETERGWEAHV 659

Query: 658 -NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
             +     +R+ RGV++  +L+ + + S  ++     ++R+ E +     L        +
Sbjct: 660 TEDGGYRFERMVRGVKDIAILDMALLGSADARQIDRVASRLSEVFAEPPVLRRKDKVETL 719

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +GP  LLD IF+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+TDA+ AD L
Sbjct: 720 SGPMGLLDAIFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVTDATDADSL 779

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           FSRLMGD+VEPRREFIQEN+L    LD+
Sbjct: 780 FSRLMGDDVEPRREFIQENALSVANLDV 807


>gi|109896336|ref|YP_659591.1| DNA gyrase, B subunit [Pseudoalteromonas atlantica T6c]
 gi|109698617|gb|ABG38537.1| DNA gyrase subunit B [Pseudoalteromonas atlantica T6c]
          Length = 806

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/812 (50%), Positives = 551/812 (67%), Gaps = 15/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  +   YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MAEENK---YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ DGS +V D+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CTNINVKIHTDGSVSVKDDGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L++ I+R G ++E  + +G+   PL V G + + TGT + F PS +
Sbjct: 118 HGVGVSVVNALSRKLQIMIRRAGEVHEQEYQHGVPQKPLEVIGES-DTTGTSIRFWPSEE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+YD L  RLRELSFLNS V I L D+R  +       Y+GGI AFV YL+++K
Sbjct: 177 TFTGIEFHYDILAKRLRELSFLNSGVSIILEDERDGKK--DHFMYEGGIRAFVEYLNQNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ Q        RD+ IS+++A++WND + ENV CFTNNIPQ+DGG+HL+G R ALTR 
Sbjct: 235 TPVHQQVFHFNSQRDDGISVEVALQWNDSFQENVFCFTNNIPQRDGGSHLAGFRGALTRT 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +++EK   +KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVR  VE+ 
Sbjct: 295 LNTFMEKEGHNKKNKTSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVRPAVETV 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P  +KII+ K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC E
Sbjct: 355 MGEKLNEFLLENPSASKIIIGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 415 KDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D +D  KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I  G++YI +P
Sbjct: 475 ALGCGIGRDEYDPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY   +GK  QY+KD++SL  YL   +L        +    +S   L   +       K
Sbjct: 535 PLYKTKKGKQEQYLKDDDSLTKYLTAIALDNASIHVNEEAPGLSGASLEKLVSQYQNGMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNC-ESDQEINVSLASK------LANRLNFIAEKSEKS 652
           +IK       +  +   + S +    +   E ++ + +K        N ++    + E  
Sbjct: 595 MIKRVSRVMPEVILTSLIYSKIITLQDLQDEASLEVVAKSYTESLTRNEVDGATYRYEVR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            +    N  I +     G+  ++ ++   I S      R  +  I         +  N  
Sbjct: 655 LNNERKNYYIALIIRLHGIDTEYKIDQEFIESIEYTRLRELNESINGLIEEGGYVKRNDK 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              I+     LD + +  +KG  +QRYKGLGEMN  QLWETT++P +R +L+VK+ DA  
Sbjct: 715 VKAISSFAEGLDWLMAESKKGQYIQRYKGLGEMNPGQLWETTMDPASRRMLQVKVEDAIA 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LF+ LMGD VEPRR FI+EN+L    LD+
Sbjct: 775 ADQLFTTLMGDHVEPRRAFIEENALRVANLDV 806


>gi|226942174|ref|YP_002797247.1| DNA gyrase subunit B [Azotobacter vinelandii DJ]
 gi|226717101|gb|ACO76272.1| DNA gyrase protein, subunit B [Azotobacter vinelandii DJ]
          Length = 806

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/813 (50%), Positives = 547/813 (67%), Gaps = 17/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I++T++ D S TV DNGRGIP DLHKEEGISAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CNEISITIHTDESITVRDNGRGIPVDLHKEEGISAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R+G ++E ++++G+   PL   G   + TGT+V F PS++
Sbjct: 118 HGVGVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQAPLATVGDT-DGTGTQVHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV YL+ +K
Sbjct: 177 TFHNIHFSWDILAKRLRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLKAFVDYLNTNK 234

Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + Q     +Q   D + +++A++WNDG++EN+LCFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 235 NAVSQVFHFNVQREEDGVGVEVALQWNDGFNENILCFTNNIPQRDGGTHLAGFRSALTRN 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNAYIEQEGLAKKHKVTTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +      +L E+P EA+ +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MGKYFGDFLLENPNEARAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSS E+GTLIT
Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +P
Sbjct: 475 ALGCGIGREEYNIEKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+E++E+Y+   +L E      +S   +S   L   + D   + K
Sbjct: 535 PLYKVKKGKQEQYIKDDEAMEEYMTQSALEEASLHVNESAPGLSGAALEKLVSDYRTVMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
            +      + +   E  V       E   DQ +  +   +    L   AEKS  ++  S+
Sbjct: 595 TLARLSRLYPQDITEHFVYLPRVGLEQLGDQALMQAWLERFQAHLKA-AEKSGLTYRASL 653

Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
                       V+ +A G+            S   +       ++         +    
Sbjct: 654 REDRERHLWLPEVEMVAHGLSSYVTFNRDFFASNDYRTVTALGEQLNSLLEDGAYVRRGE 713

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            +  ++     L  + +   K  S+QRYKGLGEMN  QLWETT++P  R +L+V I DA 
Sbjct: 714 RRKPVSSFKETLAWLMAETAKRHSIQRYKGLGEMNPEQLWETTMDPSVRRMLKVTIEDAI 773

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             D +F+ LMGD VEPRREFI+ N+L    LD+
Sbjct: 774 ATDQIFNTLMGDAVEPRREFIENNALAVANLDV 806


>gi|15595202|ref|NP_064724.1| DNA gyrase subunit B [Pseudomonas aeruginosa PAO1]
 gi|107098998|ref|ZP_01362916.1| hypothetical protein PaerPA_01000004 [Pseudomonas aeruginosa PACS2]
 gi|116053724|ref|YP_788159.1| DNA gyrase subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218888750|ref|YP_002437614.1| DNA gyrase subunit B [Pseudomonas aeruginosa LESB58]
 gi|296386476|ref|ZP_06875975.1| DNA gyrase subunit B [Pseudomonas aeruginosa PAb1]
 gi|313111474|ref|ZP_07797275.1| DNA gyrase subunit B [Pseudomonas aeruginosa 39016]
 gi|81857426|sp|Q9I7C2|GYRB_PSEAE RecName: Full=DNA gyrase subunit B
 gi|9945822|gb|AAG03394.1|AE004440_4 DNA gyrase subunit B [Pseudomonas aeruginosa PAO1]
 gi|115588945|gb|ABJ14960.1| DNA gyrase subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218768973|emb|CAW24731.1| DNA gyrase subunit B [Pseudomonas aeruginosa LESB58]
 gi|310883777|gb|EFQ42371.1| DNA gyrase subunit B [Pseudomonas aeruginosa 39016]
          Length = 806

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/813 (49%), Positives = 551/813 (67%), Gaps = 17/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N   ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSEN---NTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I++T++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 58  CSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R   ++E  + +G+   PL   G   + +GTEV F PS +
Sbjct: 118 HGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++AFV YL+ +K
Sbjct: 177 TFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNK 234

Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 235 TAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRN 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGK  QY+KD++++E+Y+   +L +      +    +S   L   +++   +  
Sbjct: 535 PLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALEKLVNEYRGVIA 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
            +K     + +   E  +     + +   ++        K   RL   AEKS  ++  S+
Sbjct: 595 TLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTA-AEKSGLTYKASL 653

Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
                       V+ +A G+            S   +   +  +++         +    
Sbjct: 654 REDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGE 713

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            K  I+     LD + + G K  S+QRYKGLGEMN  QLWETT++P+ R +L+V I DA 
Sbjct: 714 RKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAI 773

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            AD +F+ LMGD VEPRR+FI+ N+L    LD+
Sbjct: 774 AADQIFNTLMGDAVEPRRDFIESNALAVSNLDV 806


>gi|92112140|ref|YP_572068.1| DNA gyrase subunit B [Chromohalobacter salexigens DSM 3043]
 gi|91795230|gb|ABE57369.1| DNA gyrase subunit B [Chromohalobacter salexigens DSM 3043]
          Length = 805

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/808 (50%), Positives = 531/808 (65%), Gaps = 12/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++E++DN+IDE+L G+   I
Sbjct: 1   MSEQAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D S TVSDNGRGIPTD+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  RVVIHPDESITVSDNGRGIPTDIHSEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL + R G +YE  + +G+ D+PL V G     +GT+V F PS++ F+ 
Sbjct: 121 VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTE-KSGTQVNFKPSTETFAN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I LID+RS    E    Y+GG+ AFV +L+ +K  L 
Sbjct: 180 IEFHYDILAKRLRELSFLNSGVAIRLIDERSG--AEELFHYEGGLRAFVDHLNTNKTALN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I++++AM+WND + EN+ C+TNNIPQ DGGTHL+G R+ALTR +  Y+
Sbjct: 238 QIFHFETQRDDGIAVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFRAALTRTLNHYI 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 298 ESEGLLKKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 358 SDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG G
Sbjct: 418 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ F+ +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G ++I +PPLY I
Sbjct: 478 IGREEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHVFIAQPPLYKI 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RGK   Y+KDE++L DYL   +L         +   I+   L N +     + + I   
Sbjct: 538 KRGKQETYLKDEQALTDYLTTTALDGARLYVNANAPGIAGEQLENLVSQYRDVMRRIDRL 597

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKS-------EKSWHG 655
              +    + + V +     ES ++     +    L   ++ I           +     
Sbjct: 598 SRVYPNLVLRKIVHTAKLENESLKDRVTMQNWIDHLQAEMDSIIAYEGGPRYTFQLQEDT 657

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                   V   A GV   +V       S            ++        +     +  
Sbjct: 658 ERGLFLPSVALTAHGVTTDYVWGVDFFRSADYHAMTALGETLDGLLEESAYVARGERQRS 717

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +      LD + S  ++G+S+QRYKGLGEMN  QLWETT++P +R +LRV I DA  +D 
Sbjct: 718 VGTFYEALDWLMSEAQRGLSVQRYKGLGEMNPEQLWETTMDPQSRRMLRVSIEDAVASDM 777

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALDI 803
           +F+ LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 778 MFNTLMGDEVEPRRDFIERNALVANLDI 805


>gi|146280401|ref|YP_001170554.1| DNA gyrase subunit B [Pseudomonas stutzeri A1501]
 gi|145568606|gb|ABP77712.1| DNA gyrase subunit B [Pseudomonas stutzeri A1501]
          Length = 804

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/810 (49%), Positives = 539/810 (66%), Gaps = 15/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSEN---HTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I++T++ D S TV DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CSDISITIHTDESITVRDNGRGIPVDIH-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++
Sbjct: 117 HGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPSAE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K
Sbjct: 176 TFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR +
Sbjct: 234 TAVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNL 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 294 NNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 354 GKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 414 DPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 474 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK  QY+KD+E++E+YL   +L E      +    ++   L   ++D   + K 
Sbjct: 534 LYKVKRGKQEQYIKDDEAMEEYLTQSALEEASLHVNEDAPGLAGEALERLVNDYRTVMKT 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKSW 653
           ++     +     E  +       E   D     +   + + RL       +        
Sbjct: 594 LQRLSRLYPLELTEHFIYLPRVTLEQLADHSAMQAWLEQYSARLKAGERSGLIYNLSLRE 653

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               +     V+  + G+            S   +       ++         +     K
Sbjct: 654 DKERHLWLPEVEISSHGLASYITFNRDFFGSNDYRTVTALGEKLNSLLEEGAYVQRGERK 713

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      LD + + G +  S+QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 714 KPVASFKEALDWLMNEGTRRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIAA 773

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRREFI+ N+L    LD
Sbjct: 774 DQIFNTLMGDAVEPRREFIETNALAVSNLD 803


>gi|152984068|ref|YP_001345400.1| DNA gyrase subunit B [Pseudomonas aeruginosa PA7]
 gi|150959226|gb|ABR81251.1| DNA gyrase, B subunit [Pseudomonas aeruginosa PA7]
          Length = 806

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/813 (49%), Positives = 553/813 (68%), Gaps = 17/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N   ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSEN---NTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I++T++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 58  CSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R   ++E  + +G+   PL   G   + +GTEV F PS +
Sbjct: 118 HGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++AFV YL+ +K
Sbjct: 177 TFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNK 234

Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + Q     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 235 SAVNQVFHFNVQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRN 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGK  QY+KD++++E+Y+   +L +      +    ++   L   +++   +  
Sbjct: 535 PLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLAGAALEKLVNEYRGVIA 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
            +K     + +   E  +     + +   ++ +      K   RL+  AEKS  ++  S+
Sbjct: 595 TLKRLSRLYPQELTEHFIYLPTVSVDDLANESVMQGWLEKFQARLSA-AEKSGLTYKASL 653

Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
                       V+ +A G+            S   +   +  +++         +    
Sbjct: 654 REDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGE 713

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            K  I+     LD + + G K  S+QRYKGLGEMN  QLWETT++P+ R +L+V I DA 
Sbjct: 714 RKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAI 773

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            AD +F+ LMGD VEPRR+FI+ N+L    LD+
Sbjct: 774 AADQIFNTLMGDAVEPRRDFIESNALAVSNLDV 806


>gi|209883685|ref|YP_002287542.1| DNA gyrase, B subunit [Oligotropha carboxidovorans OM5]
 gi|209871881|gb|ACI91677.1| DNA gyrase, B subunit [Oligotropha carboxidovorans OM5]
          Length = 812

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/803 (59%), Positives = 599/803 (74%), Gaps = 6/803 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            +  + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L GYA  
Sbjct: 13  TVAAAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYATR 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + V LN DGS TV D+GRGIPTD+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHGV
Sbjct: 73  VEVILNPDGSVTVRDDGRGIPTDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 132

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALSS L LRI R G  + + F +G    PL V G AG   GTEVTF  S + F+
Sbjct: 133 GVSVVNALSSKLALRIWRGGKEHYIEFQHGDAVAPLAVVGDAGGKRGTEVTFHASPETFT 192

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             ++++DTL+HRLREL+FLNS V I L D R    R   + Y+GG+EAFV +LDR+KK +
Sbjct: 193 HIEYDFDTLEHRLRELAFLNSGVNILLSDMRHAVERREELHYEGGVEAFVKFLDRNKKAV 252

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +  PI ++  +  I++++AM WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQIT Y
Sbjct: 253 VDKPIVMRAEQHGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQITGY 312

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E    +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES +N  
Sbjct: 313 AE--GMAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESIINTA 370

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LSAWLEEHP EA+ IV KV++A+  R+AAR+ARDLTRRKG LDIASLPGKLADC ERDP 
Sbjct: 371 LSAWLEEHPTEARTIVGKVIEAAAAREAARKARDLTRRKGALDIASLPGKLADCQERDPA 430

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITALGT
Sbjct: 431 KSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGT 490

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP LI  G LYI +PPLY 
Sbjct: 491 GIGRDDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPQLIEAGHLYIAQPPLYK 550

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           +TRGKS QY+KDE +LEDYLI   L + +      +      DL+  ++DA  I  L+ +
Sbjct: 551 VTRGKSEQYLKDERALEDYLIETGLDDCVLRLATGEE-RKGRDLQALVEDARTIRGLLAN 609

Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSINNS- 660
            +  ++++ +EQA I+GV N     + E     A  +A RL+ +A++ E+ W G+     
Sbjct: 610 IHSRYNRSVVEQAAIAGVLNARVTGNPETARDAADYIAKRLDALADEVERGWSGTFTEGQ 669

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
             L +R  RGV+E   ++ + + S  ++    F+  ++E +     L     +  I GP 
Sbjct: 670 GFLFERTVRGVKEVATIDDALLSSAEARRLDDFAAALQETFPRSAILRRKDTETAIHGPV 729

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           SL + +   GRKG++ QRYKGLGEMN  QLWETTL+ + RSLL+VKI +   ADD+F++L
Sbjct: 730 SLFEAVTEAGRKGVAYQRYKGLGEMNPEQLWETTLDTNARSLLQVKIREVDAADDIFTKL 789

Query: 781 MGDEVEPRREFIQENSLPSALDI 803
           MGD VEPRREFIQ+NSL + +D+
Sbjct: 790 MGDIVEPRREFIQDNSLDANVDV 812


>gi|306844398|ref|ZP_07476988.1| DNA gyrase, B subunit [Brucella sp. BO1]
 gi|306275211|gb|EFM56961.1| DNA gyrase, B subunit [Brucella sp. BO1]
          Length = 813

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/815 (59%), Positives = 622/815 (76%), Gaps = 14/815 (1%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+     +   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F
Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV Y
Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D+ KK L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQIT Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VN+ LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLA
Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G
Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           TLITALGT IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G
Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++
Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELAT-GEMRAGPDLRSVVE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
           DA  + +L+   +  +D++ +EQA I+G+ N +   D       A  +A RL+ I+E++E
Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658

Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + W G +  +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L  
Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D
Sbjct: 719 KDKVEALSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A+ AD LFSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813


>gi|148560385|ref|YP_001258162.1| DNA gyrase subunit B [Brucella ovis ATCC 25840]
 gi|148371642|gb|ABQ61621.1| DNA gyrase, B subunit [Brucella ovis ATCC 25840]
          Length = 810

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/808 (59%), Positives = 619/808 (76%), Gaps = 9/808 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A 
Sbjct: 5   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 65  LVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+FLPS D F
Sbjct: 125 VGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDTF 184

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S+ +F+Y+TL+ RLREL+FLNS V+I L D R  + +E  + Y GG+  FV Y+D+ KK 
Sbjct: 185 SMVEFDYETLERRLRELAFLNSGVRIKLADCRHADVKEQELHYDGGLVEFVKYIDQSKKS 244

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQIT 
Sbjct: 245 LLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQITG 304

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y + S  +KK+K  + GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR VVE  VN+
Sbjct: 305 YADSSGMTKKEKVQLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVEGLVNE 364

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLADC ERDP
Sbjct: 365 ALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDP 423

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GTLITALG
Sbjct: 424 AKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGTLITALG 483

Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           T IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G +YI +P
Sbjct: 484 TSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHIYIAQP 543

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++DA  + +
Sbjct: 544 PLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVEDARTLRQ 602

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
           L+   +  +D++ +EQA I+G+ N +   D       A  +A RL+ I+E++E+ W G +
Sbjct: 603 LLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETERGWSGHV 662

Query: 658 -NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
             +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L        +
Sbjct: 663 MEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRRKDKVESL 722

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD L
Sbjct: 723 SGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDATDADSL 782

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           FSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 783 FSRLMGDEVEPRREFIQDNALNVANLDV 810


>gi|327478616|gb|AEA81926.1| DNA gyrase subunit B [Pseudomonas stutzeri DSM 4166]
          Length = 804

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/810 (49%), Positives = 539/810 (66%), Gaps = 15/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSEN---HTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I++T++ D S TV DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CSDISITIHTDESITVRDNGRGIPVDIH-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++
Sbjct: 117 HGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPSAE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K
Sbjct: 176 TFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR +
Sbjct: 234 TAVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNL 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 294 NNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 354 GKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 414 DPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 474 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK  QY+KD+E++E+YL   +L E      +    ++   L   ++D   + K 
Sbjct: 534 LYKVKRGKQEQYIKDDEAMEEYLTQSALEEASLHVNEDAPGLAGEALERLVNDYRTVMKT 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLN-----FIAEKSEKSW 653
           ++     +     E  +       E   D     +   + + RL       +        
Sbjct: 594 LQRLSRLYPLELTEHFIYLPRVTLEQLADHSAMQAWLEQYSARLKGGERSGLIYNLSLRE 653

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               +     V+  + G+            S   +       ++         +     K
Sbjct: 654 DKERHLWLPEVEISSHGLASYITFNRDFFGSNDYRTVTALGEKLNSLLEEGAYVQRGERK 713

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      LD + + G +  S+QRYKGLGEMN  QLWETT++P+ R +L+V I DA  A
Sbjct: 714 KPVASFKEALDWLMNEGTRRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIAA 773

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRREFI+ N+L    LD
Sbjct: 774 DQIFNTLMGDAVEPRREFIETNALAVSNLD 803


>gi|254718345|ref|ZP_05180156.1| DNA gyrase subunit B [Brucella sp. 83/13]
 gi|265983305|ref|ZP_06096040.1| hypothetical protein BAKG_01418 [Brucella sp. 83/13]
 gi|306839568|ref|ZP_07472374.1| DNA gyrase, B subunit [Brucella sp. NF 2653]
 gi|306842586|ref|ZP_07475236.1| DNA gyrase, B subunit [Brucella sp. BO2]
 gi|264661897|gb|EEZ32158.1| hypothetical protein BAKG_01418 [Brucella sp. 83/13]
 gi|306287282|gb|EFM58768.1| DNA gyrase, B subunit [Brucella sp. BO2]
 gi|306405354|gb|EFM61627.1| DNA gyrase, B subunit [Brucella sp. NF 2653]
          Length = 813

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/815 (59%), Positives = 625/815 (76%), Gaps = 14/815 (1%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+     +   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F
Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV Y
Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D+ KK L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQIT Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VN+ LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLA
Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G
Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           TLITALGT IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G
Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++
Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELAT-GEMRAGPDLRSVVE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEKSE 650
           DA  + +L+   +  +D++ +EQA I+G+ N ++ ++   +   A  +A RL+ I+E++E
Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASKDNATAQHSADTVAKRLDMISEETE 658

Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + W G +  +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L  
Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D
Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A+ AD LFSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813


>gi|254515866|ref|ZP_05127926.1| DNA gyrase, B subunit [gamma proteobacterium NOR5-3]
 gi|219675588|gb|EED31954.1| DNA gyrase, B subunit [gamma proteobacterium NOR5-3]
          Length = 804

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/810 (49%), Positives = 546/810 (67%), Gaps = 13/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD   + SYD   I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSD--ASESYDGSKIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +T++ D S +V D+GRGIPTD+H EEG+SAAEVI+T LHAGGKF+  +YKVSGGL
Sbjct: 59  CGKILITIHPDESVSVQDDGRGIPTDMH-EEGVSAAEVILTVLHAGGKFDDNTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I R G  YE  +++G+    L   G A + TGT + F PS++
Sbjct: 118 HGVGVSVVNALSEELWLTIWRAGRRYEQRYVHGVPQGSLEDVGEA-DKTGTLIRFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F ++ L  RLREL+FLNS V+I L D+RS +      FY+GG++AFV YL+R+K
Sbjct: 177 TFTNIEFEFEILAKRLRELAFLNSGVEILLEDERSGKE--DRYFYEGGLKAFVDYLNRNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ ++      + D  ++++A++WND Y EN+ C+TNNIPQ+DGGTHL+G RSALTR +
Sbjct: 235 TPMHKAFHFQADTEDGTAVEVALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRSALTRTL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++VVE  +
Sbjct: 295 NAYIEREGLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTVVEQTM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+  S +L E P EAK IV K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 NNRFSEYLLESPGEAKAIVTKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D   SE++LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKML+S E+GTL+TA
Sbjct: 415 DAALSEIYLVEGDSAGGSAKQGRNRRFQAILPLKGKILNVEKARFDKMLASVEVGTLVTA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ FD +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQM  LI  G++YI +PP
Sbjct: 475 LGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMRELIDRGYVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I +GK  QY+KD+ +L ++L  Q+L             IS   L   I     +D +
Sbjct: 535 LYKIAKGKQHQYLKDDAALAEFLTAQALDGAALYVNAEAPGISGESLAELIRQYQAVDAI 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEK----SEKSWH 654
           +K    ++ +  I + V     N +   D+         ++ RL  +  K    S     
Sbjct: 595 VKRRSRHYPEELIWELVFGPSLNGDDLTDKAAVEQYCDAMSERLLTLKTKGTSYSVVPRS 654

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                   LV+ +A GV+    L+     S            + +              +
Sbjct: 655 DDQETWYPLVRMLAHGVERPIALKPEFFRSKDYAAMAALGQTLNDLIDESGYFQRGEKTL 714

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +       L+ + +  +KG  +QRYKGLGEMN  QLWETT++P++R +L+V I DA  AD
Sbjct: 715 QTQDFVEGLEWLMAEAKKGYYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAMLAD 774

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ++F+ LMGD+VEPRREFI++N+L    LD+
Sbjct: 775 EIFTTLMGDQVEPRREFIEQNALYVSNLDV 804


>gi|62289106|ref|YP_220899.1| DNA gyrase subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|82699044|ref|YP_413618.1| DNA gyrase subunit B [Brucella melitensis biovar Abortus 2308]
 gi|256368589|ref|YP_003106095.1| DNA gyrase subunit B [Brucella microti CCM 4915]
 gi|62195238|gb|AAX73538.1| GyrB, DNA gyrase, B subunit [Brucella abortus bv. 1 str. 9-941]
 gi|82615145|emb|CAJ10078.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Brucella melitensis biovar Abortus 2308]
 gi|255998747|gb|ACU47146.1| DNA gyrase subunit B [Brucella microti CCM 4915]
          Length = 810

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/808 (59%), Positives = 620/808 (76%), Gaps = 9/808 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A 
Sbjct: 5   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 65  LVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+FLPS D F
Sbjct: 125 VGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDTF 184

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV Y+D+ KK 
Sbjct: 185 SMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKYIDQSKKS 244

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQIT 
Sbjct: 245 LLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQITG 304

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE  VN+
Sbjct: 305 YADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVEGLVNE 364

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLADC ERDP
Sbjct: 365 ALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDP 423

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GTLITALG
Sbjct: 424 AKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGTLITALG 483

Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           T IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G +YI +P
Sbjct: 484 TSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHIYIAQP 543

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++DA  + +
Sbjct: 544 PLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVEDARTLRQ 602

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
           L+   +  +D++ +EQA I+G+ N +   D       A  +A RL+ I+E++E+ W G +
Sbjct: 603 LLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETERGWSGHV 662

Query: 658 -NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
             +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L        +
Sbjct: 663 MEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRRKDKVESL 722

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD L
Sbjct: 723 SGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDATDADSL 782

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           FSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 783 FSRLMGDEVEPRREFIQDNALNVANLDV 810


>gi|292490174|ref|YP_003525613.1| DNA gyrase subunit beta [Nitrosococcus halophilus Nc4]
 gi|291578769|gb|ADE13226.1| DNA gyrase, B subunit [Nitrosococcus halophilus Nc4]
          Length = 805

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/807 (50%), Positives = 549/807 (68%), Gaps = 11/807 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             +++YD+  I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + +
Sbjct: 2   KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNEV 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           +V ++ + + T+SDNGRGIPTD+H EEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 62  SVIVHSNDTVTISDNGRGIPTDIHHEEGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALSS L L I R+G +Y+  + +G+   PL   GS  + +GT + F PS  IFS 
Sbjct: 122 VSVVNALSSTLFLEIHRDGQVYQQHYRDGVPQAPLTTVGSTKH-SGTTIRFSPSPKIFSN 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             FN+D    RLREL+FLN+ V+I L D+R    R+    Y+GGI+AFV +L+++K PL 
Sbjct: 181 IVFNFDIFAKRLRELAFLNAGVRILLEDERVG--RKEEFLYEGGIQAFVEHLNKNKTPLH 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +    QG RD++ ++LAM+WND Y E+  CFTNNIPQ+DGGTHL+G RSALTR +  Y+
Sbjct: 239 DNVFYFQGERDDVVVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRSALTRTLNQYI 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K S  GDD REG T+VLSIK+ DP+FSSQTKEKLVSSEV+ VV++ V++  
Sbjct: 299 EREALAKKTKVSTTGDDAREGLTAVLSIKVRDPKFSSQTKEKLVSSEVKPVVDALVSEYF 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
            ++L EHP +AK I  K++DA+  R+AAR+AR+LTRRKG LD+A LPGKLADC ERDP  
Sbjct: 359 QSFLLEHPADAKAIGSKMIDAARAREAARKARELTRRKGALDMAGLPGKLADCQERDPTL 418

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSS E+ TLITALG G
Sbjct: 419 SELFVVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSAEVATLITALGCG 478

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           +G++ ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI +PPLY +
Sbjct: 479 VGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKV 538

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RGK  +Y++D+  +E YLIN ++             I    L   + D  ++   I+  
Sbjct: 539 KRGKQERYIRDDAEMERYLINLAIDNAKIYSEPGATPIEGETLLTLVTDYFQLKGAIERL 598

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSI 657
              +D   ++Q +     + E   E+      A++L +R N  A      + E +     
Sbjct: 599 SQRYDPLLLDQTLYLDTVSTELVTEVKRLEVWAAQLESRANSAARDGVRYEIEVTTPVEN 658

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
               + VK    GV            S   ++ +     + +   T   +  N  +  ++
Sbjct: 659 QVPILQVKITRHGVTTYQRFSMDFFASPDYQHIQKLGKPLVKLITTESYVQRNDKQQPVS 718

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                ++ +    R+G ++QRYKGLGEMN  QLWETT+NP TR L +V+I DA  AD++F
Sbjct: 719 SIQGAVNWLMEEARRGQAVQRYKGLGEMNPDQLWETTMNPATRRLSQVRIEDAIAADEIF 778

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           + LMGD VEPRR+FI+ N+L  A LD+
Sbjct: 779 TTLMGDHVEPRRDFIEANALNVAHLDV 805


>gi|17988106|ref|NP_540740.1| DNA gyrase subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|225851665|ref|YP_002731898.1| DNA gyrase subunit B [Brucella melitensis ATCC 23457]
 gi|256045916|ref|ZP_05448790.1| DNA gyrase subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112631|ref|ZP_05453552.1| DNA gyrase subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|256264825|ref|ZP_05467357.1| DNA gyrase subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|260563202|ref|ZP_05833688.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265992329|ref|ZP_06104886.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994072|ref|ZP_06106629.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17983859|gb|AAL53004.1| DNA gyrase subunit b [Brucella melitensis bv. 1 str. 16M]
 gi|225640030|gb|ACN99943.1| DNA gyrase, B subunit [Brucella melitensis ATCC 23457]
 gi|260153218|gb|EEW88310.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|262765053|gb|EEZ10974.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263003395|gb|EEZ15688.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263095280|gb|EEZ18907.1| DNA gyrase subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|326408144|gb|ADZ65209.1| DNA gyrase subunit B [Brucella melitensis M28]
 gi|326537855|gb|ADZ86070.1| DNA gyrase, B subunit [Brucella melitensis M5-90]
          Length = 813

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/815 (59%), Positives = 621/815 (76%), Gaps = 14/815 (1%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+     +   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F
Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV Y
Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
            D+ KK L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A
Sbjct: 241 TDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQIT Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VN+ LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLA
Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G
Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           TLITALGT IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G
Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++
Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
           DA  + +L+   +  +D++ +EQA I+G+ N +   D       A  +A RL+ I+E++E
Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658

Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + W G +  +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L  
Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D
Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A+ AD LFSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813


>gi|189023380|ref|YP_001934148.1| DNA gyrase subunit B [Brucella abortus S19]
 gi|225626666|ref|ZP_03784705.1| DNA gyrase, B subunit [Brucella ceti str. Cudo]
 gi|237814597|ref|ZP_04593595.1| DNA gyrase, B subunit [Brucella abortus str. 2308 A]
 gi|254694923|ref|ZP_05156751.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254696550|ref|ZP_05158378.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700937|ref|ZP_05162765.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513]
 gi|254707179|ref|ZP_05169007.1| DNA gyrase subunit B [Brucella pinnipedialis M163/99/10]
 gi|254709277|ref|ZP_05171088.1| DNA gyrase subunit B [Brucella pinnipedialis B2/94]
 gi|254731465|ref|ZP_05190043.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292]
 gi|256030800|ref|ZP_05444414.1| DNA gyrase subunit B [Brucella pinnipedialis M292/94/1]
 gi|256060267|ref|ZP_05450442.1| DNA gyrase subunit B [Brucella neotomae 5K33]
 gi|256158821|ref|ZP_05456682.1| DNA gyrase subunit B [Brucella ceti M490/95/1]
 gi|256254206|ref|ZP_05459742.1| DNA gyrase subunit B [Brucella ceti B1/94]
 gi|256258686|ref|ZP_05464222.1| DNA gyrase subunit B [Brucella abortus bv. 9 str. C68]
 gi|260169704|ref|ZP_05756515.1| DNA gyrase subunit B [Brucella sp. F5/99]
 gi|260546403|ref|ZP_05822143.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260759206|ref|ZP_05871554.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292]
 gi|260760928|ref|ZP_05873271.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885003|ref|ZP_05896617.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261215258|ref|ZP_05929539.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|261221355|ref|ZP_05935636.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314658|ref|ZP_05953855.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261316784|ref|ZP_05955981.1| hypothetical protein BAHG_00433 [Brucella pinnipedialis B2/94]
 gi|261324241|ref|ZP_05963438.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261751453|ref|ZP_05995162.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513]
 gi|261759241|ref|ZP_06002950.1| DNA gyrase subunit B [Brucella sp. F5/99]
 gi|265987855|ref|ZP_06100412.1| hypothetical protein BALG_00432 [Brucella pinnipedialis M292/94/1]
 gi|265997315|ref|ZP_06109872.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294851528|ref|ZP_06792201.1| hypothetical protein BAZG_00434 [Brucella sp. NVSL 07-0026]
 gi|297247522|ref|ZP_06931240.1| DNA gyrase, B subunit [Brucella abortus bv. 5 str. B3196]
 gi|189018952|gb|ACD71674.1| DNA gyrase subunit B [Brucella abortus S19]
 gi|225618323|gb|EEH15366.1| DNA gyrase, B subunit [Brucella ceti str. Cudo]
 gi|237789434|gb|EEP63644.1| DNA gyrase, B subunit [Brucella abortus str. 2308 A]
 gi|260096510|gb|EEW80386.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260669524|gb|EEX56464.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292]
 gi|260671360|gb|EEX58181.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260874531|gb|EEX81600.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260916865|gb|EEX83726.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|260919939|gb|EEX86592.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261296007|gb|EEX99503.1| hypothetical protein BAHG_00433 [Brucella pinnipedialis B2/94]
 gi|261300221|gb|EEY03718.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261303684|gb|EEY07181.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261739225|gb|EEY27221.1| DNA gyrase subunit B [Brucella sp. F5/99]
 gi|261741206|gb|EEY29132.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513]
 gi|262551783|gb|EEZ07773.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264660052|gb|EEZ30313.1| hypothetical protein BALG_00432 [Brucella pinnipedialis M292/94/1]
 gi|294820117|gb|EFG37116.1| hypothetical protein BAZG_00434 [Brucella sp. NVSL 07-0026]
 gi|297174691|gb|EFH34038.1| DNA gyrase, B subunit [Brucella abortus bv. 5 str. B3196]
          Length = 813

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/815 (59%), Positives = 622/815 (76%), Gaps = 14/815 (1%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+     +   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F
Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV Y
Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D+ KK L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQIT Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VN+ LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLA
Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G
Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           TLITALGT IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G
Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++
Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
           DA  + +L+   +  +D++ +EQA I+G+ N +   D       A  +A RL+ I+E++E
Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658

Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + W G +  +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L  
Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D
Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A+ AD LFSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813


>gi|326793326|ref|YP_004311146.1| DNA gyrase B subunit [Marinomonas mediterranea MMB-1]
 gi|326544090|gb|ADZ89310.1| DNA gyrase, B subunit [Marinomonas mediterranea MMB-1]
          Length = 807

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/810 (50%), Positives = 541/810 (66%), Gaps = 14/810 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I
Sbjct: 1   MSENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVT++ D S +VSDNGRGIP D+H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  TVTIHPDESVSVSDNGRGIPVDMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L I+++G IYE ++++G+   PL + G      GT V F PS+D FS 
Sbjct: 121 VSVVNALSESLTLTIRKDGKIYEQNYVHGVPQAPLAIIGDTDGA-GTSVHFKPSADTFSN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F YD L  RLRELSFLNS V I L D+RS +       Y+GG+ +FV +L+ +K P+ 
Sbjct: 180 ILFIYDILAKRLRELSFLNSGVAIHLKDERSGKE--EFFNYEGGLRSFVEHLNTNKTPIN 237

Query: 245 QSPIRIQGS---RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
                I       D I++++A++WN+G+ EN+ C+TNNIPQ+DGGTHL+G R ALTR + 
Sbjct: 238 DIFHFICQRDDLEDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRGALTRTLN 297

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +++E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 298 NFIESEGLAKKQKVATTGDDSREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMA 357

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              + +L E P EAKIIV K++DA+  R+AARRARD+TRRKG LDIA LPGKLADC E+D
Sbjct: 358 KRFAEYLLEKPNEAKIIVNKMIDAARAREAARRARDMTRRKGALDIAGLPGKLADCQEKD 417

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITAL
Sbjct: 418 PALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITAL 477

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG+D F+ +KLRYH I+IMTDADVDG+HIRTLLLTFFFRQMP +I  G ++I +PPL
Sbjct: 478 GCGIGRDEFNPDKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHIFIAQPPL 537

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +TR K+  Y+KDE +LE +LI  +L        +    I  + L   I D + I + I
Sbjct: 538 YKVTRRKNELYIKDEHALEQHLIEVALDGAALYVNEGAPGIQGSALAKLIRDYIAIQEDI 597

Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAE-----KSEKSWH 654
           +     + +  + + +       E  +D+         L  ++                 
Sbjct: 598 ERMARVYPQDVMSKLLYVAPLRSESLTDETEVAEWVELLRQQMPMDTRTGFQFDFSVEKD 657

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
              N    +V  ++ GV  ++  E +   S         S  ++E +     +       
Sbjct: 658 EERNVYLPVVDIMSHGVNNRYRFEATFFSSPEYARIVELSETVKELFSEESYIQRGERTQ 717

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +T    +   +    ++G+ +QRYKGLGEMN  QLWETT++PD+R +LRV I DA  AD
Sbjct: 718 IVTDIDVMKTWLMKEAKRGMDVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIDDAVAAD 777

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +F+ LMGDEVEPRR FIQ+N+L    LD+
Sbjct: 778 QMFTTLMGDEVEPRRNFIQDNALSVANLDV 807


>gi|170719191|ref|YP_001746879.1| DNA gyrase subunit B [Pseudomonas putida W619]
 gi|169757194|gb|ACA70510.1| DNA gyrase, B subunit [Pseudomonas putida W619]
          Length = 806

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/811 (49%), Positives = 548/811 (67%), Gaps = 15/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDITVIIHTDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F PS++
Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+          R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR 
Sbjct: 235 TPVNSQVFHFNVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY+E+   +KK+K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNSYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY+KD+E++E+Y+   +L +      +S   +S   L   +++   + K
Sbjct: 535 PLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEVLVNEFRGVMK 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652
            +K     + +   E  +       E   D  +  +  +KL  RL+      +  K+   
Sbjct: 595 TLKRLSRLYPEELTEHFIYLPEVTLEQLGDHAVMENWLAKLQERLSNSQKSGLMYKATLR 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                N     V+  + G+            S   +      +++         +     
Sbjct: 655 EDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGSKLASLLGEGAYVQRGER 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  I      LD + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  
Sbjct: 715 RKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIA 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           AD +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 ADQIFNTLMGDAVEPRRDFIESNALSVSNLD 805


>gi|254237753|ref|ZP_04931076.1| DNA gyrase subunit B [Pseudomonas aeruginosa C3719]
 gi|126169684|gb|EAZ55195.1| DNA gyrase subunit B [Pseudomonas aeruginosa C3719]
          Length = 806

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/813 (49%), Positives = 551/813 (67%), Gaps = 17/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N   ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSEN---NTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I++T++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 58  CSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R   ++E  + +G+   PL   G   + +GTEV F PS +
Sbjct: 118 HGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++AFV YL+ +K
Sbjct: 177 TFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNK 234

Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 235 TAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRN 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 295 LNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAK GR+R  QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 415 KDPALSELYIVEGDSAGGSAKHGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +P
Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGK  QY+KD++++E+Y+   +L +      +    +S   L   +++   +  
Sbjct: 535 PLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALEKLVNEYRGVIA 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
            +K     + +   E  +     + +   ++        K   RL   AEKS  ++  S+
Sbjct: 595 TLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTA-AEKSGLTYKASL 653

Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
                       V+ +A G+            S   +   +  +++         +    
Sbjct: 654 REDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGE 713

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            K  I+     LD + + G K  S+QRYKGLGEMNA QLWETT++P+ R +L+V I DA 
Sbjct: 714 RKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNAEQLWETTMDPNVRRMLKVTIEDAI 773

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            AD +F+ LMGD VEPRR+FI+ N+L    LD+
Sbjct: 774 AADQIFNTLMGDAVEPRRDFIESNALAVSNLDV 806


>gi|298290587|ref|YP_003692526.1| DNA gyrase subunit beta [Starkeya novella DSM 506]
 gi|296927098|gb|ADH87907.1| DNA gyrase, B subunit [Starkeya novella DSM 506]
          Length = 812

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/805 (59%), Positives = 603/805 (74%), Gaps = 4/805 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + +     Y A SIQ+L+GLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L GYA
Sbjct: 9   TPSSNGEDYGAQSIQVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYA 68

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D +TVTLN DGS TV+DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKFNQ SYKVSGGLH
Sbjct: 69  DEVTVTLNADGSVTVTDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFNQNSYKVSGGLH 128

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           GVGVSVVNALS+ L L I R G  + + F +G  + PL V G A     GT VTF+PS D
Sbjct: 129 GVGVSVVNALSTTLDLTIWRNGLEHHIRFRHGDAEAPLAVKGPAPEGRRGTMVTFVPSPD 188

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+Y TL+HRLREL+FLNS V+I L D R PE +   M Y+GG+EAFV YLDR K
Sbjct: 189 TFTHIEFDYATLEHRLRELAFLNSGVRIVLTDARHPEVKREEMMYEGGVEAFVQYLDRSK 248

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L+  PI I+  +D I+++ AM WND YHENVLCFTNNIPQ+D GTH +G  +ALTRQ+
Sbjct: 249 QALLPKPIVIRAEKDGIAVECAMSWNDSYHENVLCFTNNIPQRDRGTHFTGFAAALTRQV 308

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y E+S  +KK+K    G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ V
Sbjct: 309 IGYSERSGIAKKEKVEPTGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVEALV 368

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L +WLEEHP E+K +V KV++A+  R+AAR+AR+LTRRK  LD+ASLPGKLADC ER
Sbjct: 369 NEALGSWLEEHPAESKSLVTKVVEAAAAREAARKARELTRRKNPLDVASLPGKLADCQER 428

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP KSELF+VEGDSAGGSAK GR+R  QAILPLRGKILNVERARFDKMLSS++IGTLITA
Sbjct: 429 DPAKSELFIVEGDSAGGSAKMGRNRAFQAILPLRGKILNVERARFDKMLSSEQIGTLITA 488

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D F+++KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PP
Sbjct: 489 LGTGIGRDDFNVDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPDLLDRGHVYIAQPP 548

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY +TRGKS QY+KDE SLEDYLI+Q L E       S  V    DL + ++       +
Sbjct: 549 LYKVTRGKSEQYLKDERSLEDYLIDQGLDEAALHLA-SGEVRVGADLHHVLESTRSFRNV 607

Query: 601 IKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
           +   +P +++  +EQA I+G F      ++E   ++A+++A RL+ IAE +E+ W G  +
Sbjct: 608 MNGLHPRYNRAVVEQAAIAGAFAPGLLIEEERAAAVAAEVARRLDLIAEDTERGWTGEAD 667

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
            S     R  RGV+E  VL+ + + S  ++     S  ++E +    +L   G+   + G
Sbjct: 668 GSGYRFSRTVRGVKEVAVLDATFVGSAEARRLDSLSAELQEVHAEPATLRRKGNDTLVFG 727

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  L D +   GRKGI++QRYKGLGEMNA QLWETTL+ + RSLL+VK+ + + ADDLF+
Sbjct: 728 PMDLFDAVTDAGRKGIALQRYKGLGEMNAEQLWETTLDVNARSLLQVKVKEVADADDLFN 787

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
           RLMGD VEPRREFIQ+N+L +++D+
Sbjct: 788 RLMGDVVEPRREFIQDNALRASVDV 812


>gi|312112799|ref|YP_004010395.1| DNA gyrase subunit beta [Rhodomicrobium vannielii ATCC 17100]
 gi|311217928|gb|ADP69296.1| DNA gyrase, B subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 811

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/801 (56%), Positives = 587/801 (73%), Gaps = 6/801 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L GYAD ++VT
Sbjct: 12  EAYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALGGYADYVSVT 71

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV DNGRGIPT++H +EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV
Sbjct: 72  LNADGSVTVEDNGRGIPTEIHSQEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 131

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS+ L+L I R G+ + M+F +G+   PL + G A +  GT VTF PS   F++ DF
Sbjct: 132 VNALSTRLELTIWRSGHEHFMAFADGVPVEPLKIVGPAPDLRGTRVTFTPSPATFTMVDF 191

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +Y TL+ RLREL+FLNS V I L D R  EP +    Y+GG++AFV YLDR + PL   P
Sbjct: 192 DYATLEFRLRELAFLNSGVYIRLNDLRGVEPVKSEFKYEGGLKAFVEYLDRARTPLFPVP 251

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + ++  R+ ++++ A+ WNDGYHENVLCFTNNIPQ+DGGTHL+G R+ALTR I +Y   +
Sbjct: 252 VFVRADREGVAVEAALWWNDGYHENVLCFTNNIPQRDGGTHLAGFRAALTRTINTYAAAT 311

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +K++K  + GDD REG T VLS+K+ DP+FSSQTK+KLVSSEVR  VES + D L  W
Sbjct: 312 GVAKREKVQLTGDDAREGLTCVLSVKVADPKFSSQTKDKLVSSEVRPAVESIMTDILGTW 371

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EEHP+E K+I+ KV +A+  R+AAR+AR+LTRRKGVLD+A+LPGKLADC ERDP KSE+
Sbjct: 372 FEEHPVEGKLILLKVAEAAAAREAARKARELTRRKGVLDVANLPGKLADCQERDPAKSEV 431

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FLVEGDSAGGSAKQGR R NQA+LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG+
Sbjct: 432 FLVEGDSAGGSAKQGRDRSNQAVLPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGR 491

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FDI KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI +G +YI +PPLY + RG
Sbjct: 492 DDFDIAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPQLIESGHIYIAQPPLYKVKRG 551

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
            S  Y+KD+ + ED+LI+  L   +    D+    S  DLR  ++ A     ++   +  
Sbjct: 552 SSENYLKDQRAFEDFLIDGGLEGSV-FVNDNGERRSGRDLRQAVERARSFSHVLDGMHMR 610

Query: 608 HDKTFIEQAVISGVFNCESDQEINVS---LASKLANRLNFIAEKSEKSWHGSIN-NSDIL 663
           + +  +EQA I+G+ N +   +       LA K+  R+  ++E++E+ W  S   +   +
Sbjct: 611 YSRAVVEQAAIAGLLNPKLLDDDEEEAGRLADKVVERMKALSEEAEQGWSWSRGVDRGFV 670

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
            +R  R V+E   ++ +   S  ++    +   + E +     L   G +  + GP  LL
Sbjct: 671 FEREVRSVREAHAIDSALSHSADARKLHTYHPELAELFSGKTVLERKGTETPLHGPRDLL 730

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           + +F+ GR G++MQRYKGLGEMN  QL ETTL+P+ R+LL+VK+ + + AD++F++LMGD
Sbjct: 731 NAVFAAGRAGVTMQRYKGLGEMNPEQLRETTLDPNVRTLLQVKLGELADADEIFAKLMGD 790

Query: 784 EVEPRREFIQENSLPS-ALDI 803
            VEPRR+FIQ+N+L    LDI
Sbjct: 791 VVEPRRDFIQQNALSVSNLDI 811


>gi|23501039|ref|NP_697166.1| DNA gyrase subunit B [Brucella suis 1330]
 gi|23346904|gb|AAN29081.1| DNA gyrase, B subunit [Brucella suis 1330]
          Length = 810

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/808 (59%), Positives = 620/808 (76%), Gaps = 9/808 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A 
Sbjct: 5   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 65  LVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+FLPS D F
Sbjct: 125 VGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDTF 184

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV Y+D+ KK 
Sbjct: 185 SMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKYIDQSKKS 244

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQIT 
Sbjct: 245 LLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQITG 304

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE  VN+
Sbjct: 305 YADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVEGLVNE 364

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLADC ERDP
Sbjct: 365 ALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDP 423

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GTLITALG
Sbjct: 424 AKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGTLITALG 483

Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           T IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G +YI +P
Sbjct: 484 TSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHIYIAQP 543

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++DA  + +
Sbjct: 544 PLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVEDARMLRQ 602

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
           L+   +  +D++ +EQA I+G+ N +   D       A  +A RL+ I+E++E+ W G +
Sbjct: 603 LLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETERGWSGHV 662

Query: 658 -NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
             +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L        +
Sbjct: 663 MEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRRKDKVESL 722

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD L
Sbjct: 723 SGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDATDADSL 782

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           FSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 783 FSRLMGDEVEPRREFIQDNALNVANLDV 810


>gi|254690434|ref|ZP_05153688.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870]
 gi|260755982|ref|ZP_05868330.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870]
 gi|260676090|gb|EEX62911.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870]
          Length = 813

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/815 (59%), Positives = 621/815 (76%), Gaps = 14/815 (1%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+     +   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F
Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV Y
Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D+ KK L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQIT Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VN+ LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLA
Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G
Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           TLITALGT IG+     F+  KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G
Sbjct: 480 TLITALGTSIGKDETHGFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++
Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
           DA  + +L+   +  +D++ +EQA I+G+ N +   D       A  +A RL+ I+E++E
Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658

Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + W G +  +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L  
Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D
Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A+ AD LFSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813


>gi|254713300|ref|ZP_05175111.1| DNA gyrase subunit B [Brucella ceti M644/93/1]
 gi|254716346|ref|ZP_05178157.1| DNA gyrase subunit B [Brucella ceti M13/05/1]
 gi|261218128|ref|ZP_05932409.1| hypothetical protein BAJG_01573 [Brucella ceti M13/05/1]
 gi|261321025|ref|ZP_05960222.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260923217|gb|EEX89785.1| hypothetical protein BAJG_01573 [Brucella ceti M13/05/1]
 gi|261293715|gb|EEX97211.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 813

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/815 (59%), Positives = 621/815 (76%), Gaps = 14/815 (1%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+     +   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F
Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV Y
Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D+ KK L++  I I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A
Sbjct: 241 IDQSKKSLLEESIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQIT Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VN+ LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLA
Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G
Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           TLITALGT IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G
Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++
Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
           DA  + +L+   +  +D++ +EQA I+G+ N +   D       A  +A RL+ I+E++E
Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658

Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + W G +  +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L  
Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D
Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A+ AD LFSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813


>gi|254283642|ref|ZP_04958610.1| DNA gyrase, B subunit [gamma proteobacterium NOR51-B]
 gi|219679845|gb|EED36194.1| DNA gyrase, B subunit [gamma proteobacterium NOR51-B]
          Length = 810

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/814 (49%), Positives = 545/814 (66%), Gaps = 15/814 (1%)

Query: 1   MSDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+   +  + YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++E++DN+IDE+L 
Sbjct: 1   MSETTGDSMNEYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALA 60

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I V ++ D S TV+D+GRGIPT+ H EEG+SAAEVIMT LHAGGKF+  +YKVSG
Sbjct: 61  GHCSQIDVIIHPDESVTVADDGRGIPTETH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I+R+  +YE  + +G+ D+PL V G    +TGT V F PS
Sbjct: 120 GLHGVGVSVVNALSEHLQLTIRRQNKLYEQIYRHGVPDSPLAVVGETT-ETGTAVRFKPS 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+  +F++D L  RLREL+FLNS V+I L D+RS +    T  Y GG+ AFV +L+ 
Sbjct: 179 PETFTNIEFHFDVLGKRLRELAFLNSGVKIVLKDERSGKS--ETYAYDGGLHAFVQFLNS 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+      +      + +++A++WND + EN+ C+TNNIPQ+DGGTHL+G RSALTR
Sbjct: 237 NKTPINGVFHFMTEVDGGVGVEVALQWNDSFQENIFCYTNNIPQRDGGTHLAGFRSALTR 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 297 TLNNYIEREGLAKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 356

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +    + +L E+P EAK++V K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC 
Sbjct: 357 TMGAAFADFLLENPAEAKLVVGKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ERDP   EL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+GT++
Sbjct: 417 ERDPALCELYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLSSQEVGTMV 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG GIG+  FD +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM  LI  G ++I +
Sbjct: 477 TALGCGIGKSEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHVFIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I+RGKS QY+KDE +LE YL   +L             I+   L   +     + 
Sbjct: 537 PPLYKISRGKSSQYLKDEPALERYLTEGALDGAGLHVNADAPAITGGALAELVAQYQSVA 596

Query: 599 KLIKDFYPNHDKTFIEQAVISGV---FNCESDQEINVSLASKLANRLNFI-AEKSEKSWH 654
             I      +    + Q          +  +D     + A +L+ RL+   A +++ ++ 
Sbjct: 597 ATIDRLSRVYPPELLWQIPYMTAGLEVSDLTDTARVEAFAKELSERLHTDRASRNQYTYS 656

Query: 655 GSINNSD----ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             +++       ++++++     +  L      S            ++            
Sbjct: 657 VRVDSERGIEYPVIRQLSHSNVTEIPLTHGFFVSKEYASLVALGQTLDGLIEPGGYFKRG 716

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
              ++ T     L  + S  RKG S+QRYKGLGEMN  QLWETT++P+ R +LRVKI DA
Sbjct: 717 EKVLETTDFTEGLTWLLSEARKGYSIQRYKGLGEMNPDQLWETTMDPEHRRMLRVKIEDA 776

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             AD +F+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 777 ILADQMFTTLMGDDVEPRREFIEANALAVENLDV 810


>gi|188581760|ref|YP_001925205.1| DNA gyrase, B subunit [Methylobacterium populi BJ001]
 gi|179345258|gb|ACB80670.1| DNA gyrase, B subunit [Methylobacterium populi BJ001]
          Length = 815

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/816 (56%), Positives = 597/816 (73%), Gaps = 14/816 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+D+       SY A+SI++LKGLDAV+KRP MYIGDTD  SGLHHMIYEV+DNAIDE+L
Sbjct: 1   MADSPNTEHAESYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+AD++TVTLN DGSCTVSDNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGHADLVTVTLNADGSCTVSDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS+ LKLRI R G  + M F +G    PL V G AG+  GTEVTFLP
Sbjct: 121 GGLHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+EAFV YLD
Sbjct: 181 STETFTMTEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELCYEGGVEAFVRYLD 240

Query: 238 RHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           R +KP+  M  P+ + G RD I +++A  WND ++E VL FTNNIPQ+DGGTH++G R+A
Sbjct: 241 RSRKPVDGMAKPVTVLGERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+T Y E S  +KK+K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  
Sbjct: 301 LTRQLTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPA 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLA
Sbjct: 361 VENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIASLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS EIG
Sbjct: 421 DCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIG 480

Query: 476 TLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           TLITALG GIG+ S     F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP +I 
Sbjct: 481 TLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPEIIE 540

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G LYI +PPLY   RG+   Y+KDE +LEDYLI+Q +   +     S        L+  
Sbjct: 541 RGHLYIAQPPLYKAERGRRALYLKDERALEDYLIDQGVEGAVL-RLASGTEFGGAQLKTL 599

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEK 648
           +++A     ++   +  +D+  +EQAV++G F  +  + +  +  LA + A RL+ IA++
Sbjct: 600 VEEARAFRGILHGLHTRYDRAVVEQAVLAGAFAKDVAENLGEAEVLADRTAKRLDRIADE 659

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            EK W G+ +    +  R  R V++   L+ + + S  ++     +  + E Y   ++L 
Sbjct: 660 IEKGWTGAASEGGYVFSRTLRSVKQVASLDATLLASQEARRLAERAETLREIYEEPVTLS 719

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
             GD+ +  GP  L + + + GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ 
Sbjct: 720 RKGDETEFYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVK 779

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D + ADDLF +LMGD VEPRREFIQEN+L    LD+
Sbjct: 780 DTTDADDLFVKLMGDVVEPRREFIQENALSVANLDV 815


>gi|163842400|ref|YP_001626804.1| DNA gyrase subunit B [Brucella suis ATCC 23445]
 gi|254705305|ref|ZP_05167133.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686]
 gi|261756016|ref|ZP_05999725.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686]
 gi|163673123|gb|ABY37234.1| DNA gyrase, B subunit [Brucella suis ATCC 23445]
 gi|261745769|gb|EEY33695.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686]
          Length = 813

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/815 (59%), Positives = 622/815 (76%), Gaps = 14/815 (1%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+     +   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F
Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV Y
Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D+ KK L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQIT Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VN+ LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLA
Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G
Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           TLITALGT IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G
Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++
Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
           DA  + +L+   +  +D++ +EQA I+G+ N +   D       A  +A RL+ I+E++E
Sbjct: 599 DARMLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658

Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + W G +  +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L  
Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D
Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A+ AD LFSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813


>gi|307543593|ref|YP_003896072.1| DNA gyrase subunit beta [Halomonas elongata DSM 2581]
 gi|307215617|emb|CBV40887.1| DNA gyrase, B subunit [Halomonas elongata DSM 2581]
          Length = 806

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/809 (49%), Positives = 517/809 (63%), Gaps = 13/809 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++E++DN+IDE+L G+   I
Sbjct: 1   MSEQAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D S TV DNGRGIPT++H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  GVVIHPDESITVRDNGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+G ++E  + +G    PL V G     TG+ V F PSS+ F  
Sbjct: 121 VSVVNALSEELKLTIWRQGQVHEQIYRHGEAVAPLAVVG-TTEQTGSRVHFRPSSETFQN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV +L+ +K  L 
Sbjct: 180 IEFHYDILAKRLRELSFLNSGVAIRLTDERTGKE--ELFHYEGGLRAFVDHLNTNKTVLN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R++LTR +  Y+
Sbjct: 238 PVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRASLTRTLNHYI 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 298 EAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 358 SEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG G
Sbjct: 418 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FD +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM  LI  G ++I +PPLY I
Sbjct: 478 IGREEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMSQLIERGHVFIAQPPLYKI 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RGK   Y+KDE++L DYL   +L             I    L   +     +   I   
Sbjct: 538 KRGKQESYLKDEQALTDYLTTTALDGARLHVNADAPGIEGEGLEKLVHQYRDVMNRIDRL 597

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEI---NVSLASKLANRLNFIAEKS-------EKSWH 654
              +    + + V +     E          +    L   ++ I                
Sbjct: 598 SRVYPDVVLRKIVHAAKLEGEESLRDRVTMQNWIEYLQAEMDAIVSYEGGPRYTFRLEED 657

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                    V   A GV   +V       S   +        ++        +     K 
Sbjct: 658 SERGFYLPAVTLAAHGVTSDYVWGVDFFTSADYRAIAGLGETLDNLVEEGAYVARGERKK 717

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +      L+ + +  ++G+S+QRYKGLGEMN  QLWETT++P+TR +LRV I DA  AD
Sbjct: 718 SVGSFYDALEWLMNEAQRGLSIQRYKGLGEMNPDQLWETTMDPNTRRMLRVSIEDAVAAD 777

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803
            +F+ LMGDEVEPRR+FI+ N+L + LDI
Sbjct: 778 MMFNTLMGDEVEPRRDFIERNALVANLDI 806


>gi|153209811|ref|ZP_01947513.1| DNA gyrase, B subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|120575235|gb|EAX31859.1| DNA gyrase, B subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 808

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/812 (49%), Positives = 541/812 (66%), Gaps = 13/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +     YD+ +I++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ DGS +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL
Sbjct: 60  CSHIWVTIHADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L + I++ GNIY  ++  G+   PL VTG + + TGTE+ F PS+ 
Sbjct: 120 HGVGISVVNALSEELYMTIRQNGNIYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+YD L  RLREL+FLN  V+I L D+RS   R     Y+GGI+AFV +L++ K
Sbjct: 179 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR +
Sbjct: 237 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V
Sbjct: 297 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              L  +L E+P +A+II  KV+DA+  R+AAR+ARD+TRRK VLD+  LPGKLADC E+
Sbjct: 357 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   ELFLVEGDSAGGSAKQ R R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 417 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 477 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + + K  QYVKD+ +L+  L+  +L             I  + L N         + 
Sbjct: 537 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653
           I      +    +++ +           ++E  ++   +L  +LN    ++   +     
Sbjct: 597 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRYQTAIK 656

Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                     +V  I  G+ +Q +           ++     N+I         ++ N  
Sbjct: 657 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 716

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  +T     L+     G+KG+++QRYKGLGEMN  QLWETT++ ++R LL V I DA  
Sbjct: 717 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 776

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD++F+ LMGD+VEPRR FI++N+L    LD+
Sbjct: 777 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 808


>gi|161830408|ref|YP_001595905.1| DNA gyrase, B subunit [Coxiella burnetii RSA 331]
 gi|161762275|gb|ABX77917.1| DNA gyrase, B subunit [Coxiella burnetii RSA 331]
          Length = 808

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/812 (49%), Positives = 541/812 (66%), Gaps = 13/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +     YD+ +I++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ DGS +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL
Sbjct: 60  CSHIWVTIHADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L + I++ GN+Y  ++  G+   PL VTG + + TGTE+ F PS+ 
Sbjct: 120 HGVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+YD L  RLREL+FLN  V+I L D+RS   R     Y+GGI+AFV +L++ K
Sbjct: 179 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR +
Sbjct: 237 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V
Sbjct: 297 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              L  +L E+P +A+II  KV+DA+  R+AAR+ARD+TRRK VLD+  LPGKLADC E+
Sbjct: 357 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   ELFLVEGDSAGGSAKQ R R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 417 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 477 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + + K  QYVKD+ +L+  L+  +L             I  + L N         + 
Sbjct: 537 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653
           I      +    +++ +           ++E  ++   +L  +LN    ++   +     
Sbjct: 597 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRYQTAIK 656

Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                     +V  I  G+ +Q +           ++     N+I         ++ N  
Sbjct: 657 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 716

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  +T     L+     G+KG+++QRYKGLGEMN  QLWETT++ ++R LL V I DA  
Sbjct: 717 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 776

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD++F+ LMGD+VEPRR FI++N+L    LD+
Sbjct: 777 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 808


>gi|226952833|ref|ZP_03823297.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ATCC 27244]
 gi|294648699|ref|ZP_06726159.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226836454|gb|EEH68837.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ATCC 27244]
 gi|292825374|gb|EFF84117.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 822

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/814 (50%), Positives = 543/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEILVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L+L I R G  ++  + +G    PL V G   + TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLQLTIHRAGQEHQQEYHHGDPQYPLRVIGET-DRTGTIVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN D L  RLRELSFLN+ V+I L D+R           +GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVRIVLRDERVNLENVYDY--EGGLSEFVRYINEGKT 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + IS+++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTTDADNGISVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY+E     KK+K  V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 SYMENENLLKKEKVVVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G++YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGYIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY++D E+LE +LI+ ++ E           IS   L + I D     K +
Sbjct: 548 YKLKKGKQEQYLQDNEALETFLISNAIDELALHVSADAPAISGEALASVIADYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFI-----------AEK 648
           +     +  + ++  +    F  + + E     + A +L + +  +           A +
Sbjct: 608 QRLTQRYPASLLDGLLELDAFKIDHNHEREYVETWAEQLRSAIEALQPNLRPEISLEAFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    V      +   ++L+   + S         S    +       L 
Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLLEEGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGERRIQVASFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|240139126|ref|YP_002963601.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254561720|ref|YP_003068815.1| DNA gyrase subunit B [Methylobacterium extorquens DM4]
 gi|240009098|gb|ACS40324.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254268998|emb|CAX24959.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium
           extorquens DM4]
          Length = 815

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/816 (56%), Positives = 599/816 (73%), Gaps = 14/816 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+D+       SY A+SI++LKGLDAV+KRP MYIGDTD  SGLHHMIYEV+DNAIDE+L
Sbjct: 1   MADSPNTEHADSYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+AD++TVTLN DGS TVSDNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGHADLVTVTLNADGSVTVSDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS+ LKLRI R G  + M F +G    PL V G AG+  GTEVTFLP
Sbjct: 121 GGLHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F++ +F+Y TL+ RLREL+FLNS V+I + D R  E +   + Y+GG+EAFV YLD
Sbjct: 181 STETFTMTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKREELCYEGGVEAFVRYLD 240

Query: 238 RHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           R +KP+  M  P+ + G RD I +++A+ WND ++E VL FTNNIPQ+DGGTH++G R+A
Sbjct: 241 RSRKPVDGMTKPVTVLGERDGIRVEVALWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+T Y E S  +K++K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  
Sbjct: 301 LTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPA 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLA
Sbjct: 361 VENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIASLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS EIG
Sbjct: 421 DCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIG 480

Query: 476 TLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           TLITALG GIG+ S     F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI 
Sbjct: 481 TLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIE 540

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G LYI +PPLY   RG+ + Y+KDE +LEDYLI+Q +   +     S        L+  
Sbjct: 541 RGHLYIAQPPLYKAERGRRVLYLKDERALEDYLIDQGVEGAVL-RLASGTEFGGAQLKTL 599

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEK 648
           +++A     ++   +  +D++ +EQ+V++G F  +  + +  +  LA + A RL+ IA++
Sbjct: 600 VEEARAFRGILHGLHTRYDRSVVEQSVLAGAFAKDVAENLGEAEVLADRTAKRLDRIADE 659

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            EK W G+ +    +  R  R V +   L+ + + S  ++     +  + E Y   ++L 
Sbjct: 660 IEKGWTGAASEGGYVFSRTLRSVTQVANLDATLLASQEARRLAERAETLREIYEEPVTLA 719

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
             GD+ ++ GP  L + + + GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ 
Sbjct: 720 RKGDETELYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVK 779

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D + ADDLF +LMGD VEPRREFIQEN+L    LD+
Sbjct: 780 DTTDADDLFVKLMGDVVEPRREFIQENALSVANLDV 815


>gi|212217692|ref|YP_002304479.1| DNA gyrase subunit B [Coxiella burnetii CbuK_Q154]
 gi|212011954|gb|ACJ19334.1| DNA gyrase subunit B [Coxiella burnetii CbuK_Q154]
          Length = 810

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/812 (49%), Positives = 541/812 (66%), Gaps = 13/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +     YD+ +I++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 3   MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ DGS +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL
Sbjct: 62  CSHIWVTIHADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 121

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L + I++ GNIY  ++  G+   PL VTG + + TGTE+ F PS+ 
Sbjct: 122 HGVGISVVNALSEELYMTIRQNGNIYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 180

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+YD L  RLREL+FLN  V+I L D+RS   R     Y+GGI+AFV +L++ K
Sbjct: 181 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR +
Sbjct: 239 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V
Sbjct: 299 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              L  +L E+P +A+II  KV+DA+  R+AAR+ARD+TRRK VLD+  LPGKLADC E+
Sbjct: 359 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   ELFLVEGDSAGGSAKQ R R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 419 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 479 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 538

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + + K  QYVKD+ +L+  L+  +L             I  + L N         + 
Sbjct: 539 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 598

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653
           I      +    +++ +           ++E  ++   +L  +LN    ++   +     
Sbjct: 599 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRYQTAIK 658

Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                     +V  I  G+ +Q +           ++     N+I         ++ N  
Sbjct: 659 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 718

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  +T     L+     G+KG+++QRYKGLGEMN  QLWETT++ ++R LL V I DA  
Sbjct: 719 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 778

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD++F+ LMGD+VEPRR FI++N+L    LD+
Sbjct: 779 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 810


>gi|152994047|ref|YP_001338882.1| DNA gyrase subunit B [Marinomonas sp. MWYL1]
 gi|150834971|gb|ABR68947.1| DNA gyrase, B subunit [Marinomonas sp. MWYL1]
          Length = 807

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/814 (49%), Positives = 538/814 (66%), Gaps = 18/814 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSENK----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV ++ D S +VSDNGRGIP D+H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 57  CDTITVLIHPDESISVSDNGRGIPVDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I++ G +YE  + +G+   PL + G +    GT V F PS  
Sbjct: 117 HGVGVSVVNALSEALTLTIRKNGKVYEQFYAHGVPQAPLAIVGDSDGA-GTTVHFKPSPA 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F YD L  RLRELSFLNS V I L D+R+ +       Y GG+ +FV +L+ +K
Sbjct: 176 TFSNILFVYDILAKRLRELSFLNSGVAIRLKDERTGKE--DFFNYTGGLRSFVEHLNTNK 233

Query: 241 KPLMQSPIRI---QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            P+      +   +   D I++++A++WN+G+ EN+ C+TNNIPQ+DGGTHL+G R ALT
Sbjct: 234 TPINDIFHFMCQREDLEDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRGALT 293

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +++EK   +KK K +  GDDCREG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 294 RTLNTFIEKEGLAKKQKVATTGDDCREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVE 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +    S +L E P EAKIIV K++DA+  R+AARRARD+TRRKG LDIA LPGKLADC
Sbjct: 354 QEMTKRFSEFLLEKPNEAKIIVNKMIDAARAREAARRARDMTRRKGALDIAGLPGKLADC 413

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKML+S E+GTL
Sbjct: 414 QEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLASVEVGTL 473

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALG GIG+D F+ +KLRYH I+IMTDADVDG+HIRTLLLTFFFRQMP +I  G ++I 
Sbjct: 474 ITALGCGIGRDEFNADKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHIFIA 533

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPL+ I RGK  QY+KDE +L+ +LI  +L        +    I    L   + D + I
Sbjct: 534 QPPLFKIKRGKQEQYIKDEAALDQHLIEVALDGAHMHVNEDAPGIQGEHLAKLMRDYIHI 593

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSE 650
           +  +      + K  + + +       +    +   +     + +++   A         
Sbjct: 594 EADVDRLARVYPKDVMGKLLYCKPLTQDDLTKEAAVMEWVEAIRSQMPQDARTGFRFDFS 653

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
                  N    +V  ++ GV  ++  EG+   S   K     S  + E +     +   
Sbjct: 654 VEKDEERNIYLPVVDIMSHGVSNRYRFEGTFFNSPEYKRIVAMSETVAELFGEESYIQRG 713

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             +  +     +   +     +G+++QRYKGLGEMN  QLWETT++PD R +LRV I DA
Sbjct: 714 ERRETVKTISDMKSWLMKEASRGMTIQRYKGLGEMNPEQLWETTMDPDARRMLRVTIDDA 773

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             AD +F+ LMGDEVEPRR FIQ+N+L    LD+
Sbjct: 774 VAADQMFTTLMGDEVEPRRNFIQDNALNVANLDV 807


>gi|163851998|ref|YP_001640041.1| DNA gyrase, B subunit [Methylobacterium extorquens PA1]
 gi|163663603|gb|ABY30970.1| DNA gyrase, B subunit [Methylobacterium extorquens PA1]
          Length = 815

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/816 (56%), Positives = 599/816 (73%), Gaps = 14/816 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+D+       SY A+SI++LKGLDAV+KRP MYIGDTD  SGLHHMIYEV+DNAIDE+L
Sbjct: 1   MADSPNTEHADSYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+AD++TVTLN DGS TVSDNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGHADLVTVTLNADGSVTVSDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS+ LKLRI R G  + M F +G    PL V G AG+  GTEVTFLP
Sbjct: 121 GGLHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F++ +F+Y TL+ RLREL+FLNS V+I + D R  E +   + Y+GG+EAFV YLD
Sbjct: 181 STETFTMTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKREELCYEGGVEAFVRYLD 240

Query: 238 RHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           R +KP+  M  P+ + G RD I +++A+ WND ++E VL FTNNIPQ+DGGTH++G R+A
Sbjct: 241 RSRKPVDGMTKPVTVLGERDGIRVEVALWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+T Y E S  +K++K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  
Sbjct: 301 LTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPA 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLA
Sbjct: 361 VENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIASLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS EIG
Sbjct: 421 DCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIG 480

Query: 476 TLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           TLITALG GIG+ S     F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI 
Sbjct: 481 TLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIE 540

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G LYI +PPLY   RG+ + Y+KDE +LEDYLI+Q +   +     S        L+  
Sbjct: 541 RGHLYIAQPPLYKAERGRRVLYLKDERALEDYLIDQGVEGAVL-RLASGTEFGGAQLKTL 599

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEK 648
           +++A     ++   +  +D++ +EQ+V++G F  +  + +  +  LA + A RL+ IA++
Sbjct: 600 VEEARAFRGILHGLHTRYDRSVVEQSVLAGAFAKDVAENLGEAEVLADRTAKRLDRIADE 659

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            EK W G+ +    +  R  R V +   L+ + + S  ++     +  + E Y   ++L 
Sbjct: 660 IEKGWTGAASEGGYVFSRTLRSVTQVANLDATLLSSQEARRLAERAETLREIYEEPVTLA 719

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
             GD+ ++ GP  L + + + GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ 
Sbjct: 720 RKGDETELYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVK 779

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D + ADDLF +LMGD VEPRREFIQEN+L    LD+
Sbjct: 780 DTTDADDLFVKLMGDVVEPRREFIQENALSVANLDV 815


>gi|209693646|ref|YP_002261574.1| DNA gyrase subunit B [Aliivibrio salmonicida LFI1238]
 gi|208007597|emb|CAQ77697.1| DNA gyrase subunit B [Aliivibrio salmonicida LFI1238]
          Length = 805

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/813 (50%), Positives = 551/813 (67%), Gaps = 18/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +VSD+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CSDIIVTIHEDDSVSVSDDGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  ++L I R G I++  + +G+   PL V G   + TGT++ F PS  
Sbjct: 116 HGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQ 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F YD L  RLRELSFLNS V I L D R  E +     ++GGI+AFV++L+R+K
Sbjct: 175 TFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFMFEGGIKAFVTHLNRNK 233

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG HLSG RSALTR
Sbjct: 234 TPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTR 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES
Sbjct: 294 TLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVES 353

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC 
Sbjct: 354 AMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 413

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLI
Sbjct: 414 EKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLI 473

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +
Sbjct: 474 TALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQ 533

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + +GK  QY+KDEE++ +Y I Q+L             I   +L N I     + 
Sbjct: 534 PPLYKVKKGKQEQYIKDEEAMAEYQITQALDNASLFVNPH-ESIFGQELENLIRKFNSVM 592

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK----- 651
           KL+      +    + + V +     +   ++    +    L   LN     + +     
Sbjct: 593 KLLDRMSRRYPLPLLNRLVYTSRLTQDECENEATVQAWTEALVIALNEHETGASQYTAAL 652

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            ++  +N     +     GVQ ++VL    + S         S  +         +    
Sbjct: 653 QFNEELNIHQPKLVVRTHGVQHEYVLSADLLNSKEYGRIAELSESLNGLIEEGAYVQRGE 712

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            K+        +  +    R+G+ +QRYKGLGEMN  QLWETT++PD+R +++V I DA 
Sbjct: 713 RKLATETLDEAIAWLIKDSRRGVYLQRYKGLGEMNPEQLWETTMDPDSRRMMQVTINDAV 772

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            AD+LF+ LMGD VEPRR FI+EN+L    LD+
Sbjct: 773 SADELFTTLMGDHVEPRRNFIEENALRVANLDV 805


>gi|215918859|ref|NP_819060.2| DNA gyrase subunit B [Coxiella burnetii RSA 493]
 gi|206583743|gb|AAO89574.2| DNA gyrase subunit B [Coxiella burnetii RSA 493]
          Length = 810

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/812 (49%), Positives = 541/812 (66%), Gaps = 13/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +     YD+ +I++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 3   MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ DGS +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL
Sbjct: 62  CSHIWVTIHADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 121

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L + I++ GN+Y  ++  G+   PL VTG + + TGTE+ F PS+ 
Sbjct: 122 HGVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 180

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+YD L  RLREL+FLN  V+I L D+RS   R     Y+GGI+AFV +L++ K
Sbjct: 181 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR +
Sbjct: 239 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V
Sbjct: 299 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              L  +L E+P +A+II  KV+DA+  R+AAR+ARD+TRRK VLD+  LPGKLADC E+
Sbjct: 359 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   ELFLVEGDSAGGSAKQ R R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 419 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 479 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 538

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + + K  QYVKD+ +L+  L+  +L             I  + L N         + 
Sbjct: 539 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 598

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653
           I      +    +++ +           ++E  ++   +L  +LN    ++   +     
Sbjct: 599 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRYQTAIK 658

Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                     +V  I  G+ +Q +           ++     N+I         ++ N  
Sbjct: 659 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 718

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  +T     L+     G+KG+++QRYKGLGEMN  QLWETT++ ++R LL V I DA  
Sbjct: 719 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 778

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD++F+ LMGD+VEPRR FI++N+L    LD+
Sbjct: 779 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 810


>gi|119475239|ref|ZP_01615592.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2143]
 gi|119451442|gb|EAW32675.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2143]
          Length = 804

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/810 (49%), Positives = 529/810 (65%), Gaps = 13/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D    +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MTD--SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             II V ++ D S +VSD+GRGIPT++H EEG+SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 59  CSIIRVVIHPDESVSVSDDGRGIPTEMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G A   +GTE+ F PSS 
Sbjct: 118 HGVGVSVVNALSEELKLTIRRGGKLFEQVYKHGVPQKPLAVVGDAE-TSGTELRFKPSSG 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   F++D L  RLREL+FLNS V I L D+RS +    T FY+GG+  FVSYL+ +K
Sbjct: 177 TFTNIQFHFDQLAKRLRELAFLNSGVNIELKDERSGKA--ETFFYEGGLSEFVSYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +          ++ +++A++WND + E + C+TNNIPQ+DGGTHL+G R+ALTR +
Sbjct: 235 TPINKLFHFNIMGEGDVGVEVALQWNDSFQEGIFCYTNNIPQRDGGTHLAGFRAALTRSL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +K+ K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+++VE  +
Sbjct: 295 NAYIEREGLAKRAKVSTSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTIVEQAM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N     +L E+P EAK++V K++DA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NQAFGDYLLENPGEAKLVVTKMIDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT++ A
Sbjct: 415 DPALSEVYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSVEVGTIVKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+  F+ +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G ++I +PP
Sbjct: 475 LGCGIGRSEFNADKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHIFIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I RGK  QY+KDE+  E YL   +L             I    L   +     +   
Sbjct: 535 LYKINRGKQQQYIKDEDGKEAYLTQSALETASLHMNADAPGIGGQGLEVLVKQYRSVMHT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRL----NFIAEKSEKSWH 654
           I      +    +   V       +   +       A  L  +L                
Sbjct: 595 ISRLSRLYPSIAMTSMVYLPALTVDELHDRATVQQWADLLQEKLGVGTTAQTYNVSVKED 654

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
              +N    V  ++ G + +FV       S   K        +         +       
Sbjct: 655 TERHNFLPQVISLSHGTETEFVFNQDFYSSNDYKAIVELGIALTGLLEDGAYIQRGEKTE 714

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +I      +D +     +G+S+QRYKGLGEMN  QLWETT++PD R +LRV I DA  AD
Sbjct: 715 EINDFGDAIDWLMIQAERGLSIQRYKGLGEMNPDQLWETTMDPDVRRMLRVTIEDAITAD 774

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +F+ LMGD+VEPRREFI+EN+L    LD+
Sbjct: 775 QIFTTLMGDQVEPRREFIEENALKVANLDV 804


>gi|330890246|gb|EGH22907.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori str. 301020]
          Length = 805

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/810 (50%), Positives = 546/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI +G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIESGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V     + E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFTTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|149912065|ref|ZP_01900656.1| Putative DNA gyrase, subunit B [Moritella sp. PE36]
 gi|149804861|gb|EDM64898.1| Putative DNA gyrase, subunit B [Moritella sp. PE36]
          Length = 805

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/808 (50%), Positives = 537/808 (66%), Gaps = 14/808 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+   I
Sbjct: 1   MSENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  VVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I R G I+   + +G+ + P+  TG     TGT++ F PS D F+ 
Sbjct: 121 VSVVNALSEKLELTIFRHGKIHNQIYRHGVPEAPMAATG-VIEGTGTKLRFWPSHDTFTN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AF+ YL+ +K P+ 
Sbjct: 180 TLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYQGGIKAFIDYLNVNKTPIN 238

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        RD+ I++++AM+WNDG+ E + CFTNNIPQ+DGG HL+G R ALTR + +Y
Sbjct: 239 KDAFHFSVERDDGITVEVAMQWNDGFQEAIYCFTNNIPQRDGGAHLAGFRGALTRTLNNY 298

Query: 304 VEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           +EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + +
Sbjct: 299 MEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQSMGE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLADC E+DP
Sbjct: 359 KLAEYLLENPKEAATVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQEKDP 418

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G
Sbjct: 419 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMG 478

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPLY
Sbjct: 479 CGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + +GK  +Y+KD+  L  YL   +L +           I    L   +    KI+KL+ 
Sbjct: 539 KMKKGKQERYLKDDADLTQYLTTIALDDAGLFVNPDAPAIQGAALEGLVTGYRKIEKLMA 598

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIA-----EKSEKSWHG 655
               +  + F  + +       E   +  +  + A +L   L           +      
Sbjct: 599 KLNRSLPRVFTNEMIYQAPLTVEMLDDEALTMAWAEELVATLTAKEMSGTLYSARIVKDE 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                  ++     G+   +        S            I         +       +
Sbjct: 659 ESQLFYPVLAIRQHGLDNNYDFTPGFFKSKEYATLTGLG--IANLLEEGAYIKRGEKTRE 716

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +T     L+ + +  ++G  +QRYKGLGEMN SQLWETT++PDTR +L+V+I DA  AD 
Sbjct: 717 VTSFVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPDTRRMLQVRIEDAVAADQ 776

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802
           LF+ LMGD VEPRREFI+EN+L    LD
Sbjct: 777 LFTTLMGDHVEPRREFIEENALKVANLD 804


>gi|66043275|ref|YP_233116.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae B728a]
 gi|289677553|ref|ZP_06498443.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae FF5]
 gi|63253982|gb|AAY35078.1| DNA gyrase, B subunit [Pseudomonas syringae pv. syringae B728a]
 gi|330937293|gb|EGH41304.1| DNA gyrase subunit B [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 805

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V       E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|254447538|ref|ZP_05061004.1| DNA gyrase, B subunit [gamma proteobacterium HTCC5015]
 gi|198262881|gb|EDY87160.1| DNA gyrase, B subunit [gamma proteobacterium HTCC5015]
          Length = 802

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/809 (50%), Positives = 545/809 (67%), Gaps = 13/809 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN     YD+ +I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSDN-----YDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S +VSDNGRGIPTD+H EEG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CSEIRVVIHNDESVSVSDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ L L I R G  +   + + + D PL V G   + +GT++TF  S +
Sbjct: 116 HGVGVSVVNALSNKLTLEILRNGKRHIQHYTDSVPDAPLEVAGDT-DRSGTKITFRASEE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++YD L  RLRELSFLNS ++I L D+R  E +E    Y+GGI AFV +L ++K
Sbjct: 175 IFTNVTYHYDILAKRLRELSFLNSGIRIVLRDER-AEGKEDVFEYEGGISAFVEHLSKNK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +  I    S+++I +++A++W+D Y EN+ C+TNNIPQ+DGGTHL+G R ALTR +
Sbjct: 234 TPLHEQVIHFDTSKEDIGVEVALQWSDSYQENIFCYTNNIPQRDGGTHLAGFRGALTRTL 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+++   + K K SV GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+SVVES +
Sbjct: 294 NNYIDREGVASKAKVSVSGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSVVESAM 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + LS +L EHP EAK I  K++DA+  R+AAR+AR++TRRK VLD+A LPGKLADC E+
Sbjct: 354 TEKLSEFLLEHPNEAKAIAHKIVDAARAREAARKAREMTRRKDVLDVAGLPGKLADCQEK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SELF+VEGDSAGGSAKQGR R  QA+LPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 414 DPTQSELFIVEGDSAGGSAKQGRDRRTQAVLPLKGKILNVEKARFDKMLSSAEVGTLITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ FD +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI +PP
Sbjct: 474 LGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD++SL DYL+NQ+L +           +S           +  + +
Sbjct: 534 LYKVKKGKQERYLKDDKSLTDYLLNQALEKAEFHVNADAPALSAEAFAELAQRYMAANAI 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFI---AEKSEKSWHG 655
           I+     +DK  +E  +           +          L+  +N     +     +   
Sbjct: 594 IERMSKRYDKLVLESMMDLPKVTESHISDKSFMDQWVESLSTNINRETGPSVDYTTAVEK 653

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                 + V+RI  GV      E    F    +      +R++        +       +
Sbjct: 654 REEGLGVRVERIVHGVPHIERYEPEFFFGGEYQLIGDLGDRLDGLLGEGAFIKRGDKIQE 713

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +    + L  + +  RKG  +QRYKGLGEMN  QL ETTL+P+TR LL+V+I DA  AD+
Sbjct: 714 VQTFGAALMWLLADARKGQMIQRYKGLGEMNPDQLHETTLDPETRRLLQVRIEDAVAADE 773

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +F+ LMGD VEPRR+FI+ N+L    LD+
Sbjct: 774 VFTTLMGDHVEPRRDFIESNALSVANLDV 802


>gi|218530751|ref|YP_002421567.1| DNA gyrase subunit beta [Methylobacterium chloromethanicum CM4]
 gi|218523054|gb|ACK83639.1| DNA gyrase, B subunit [Methylobacterium chloromethanicum CM4]
          Length = 815

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/816 (56%), Positives = 599/816 (73%), Gaps = 14/816 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+D+       SY A+SI++LKGLDAV+KRP MYIGDTD  SGLHHMIYEV+DNAIDE+L
Sbjct: 1   MADSPNTEHADSYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+AD++TVTLN DGS TVSDNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGHADLVTVTLNADGSVTVSDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS+ LKLRI R G  + M F +G    PL V G AG+  GTEVTFLP
Sbjct: 121 GGLHGVGVSVVNALSTSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F++ +F+Y TL+ RLREL+FLNS V+I + D R  E +   + Y+GG+EAFV YLD
Sbjct: 181 STETFTMTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKREELCYEGGVEAFVRYLD 240

Query: 238 RHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           R +KP+  M  P+ + G RD I +++A+ WND ++E VL FTNNIPQ+DGGTH++G R+A
Sbjct: 241 RSRKPVDGMTKPVTVLGERDGIRVEVALWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+T Y E S  +K++K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  
Sbjct: 301 LTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPA 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLA
Sbjct: 361 VENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIASLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS EIG
Sbjct: 421 DCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIG 480

Query: 476 TLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           TLITALG GIG+ S     F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI 
Sbjct: 481 TLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIE 540

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G LYI +PPLY   RG+ + Y+KDE +LEDYLI+Q +   +     S        L+  
Sbjct: 541 RGHLYIAQPPLYKAERGRRVLYLKDERALEDYLIDQGVEGAVL-RLASGTEFGGAQLKTL 599

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEK 648
           +++A     ++   +  +D++ +EQ+V++G F  +  + +  +  LA + A RL+ IA++
Sbjct: 600 VEEARAFRGILHGLHTRYDRSVVEQSVLAGAFAKDVAENLGEAEVLADRTAKRLDRIADE 659

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            EK W G+ +    +  R  R V +   L+ + + S  ++     +  + E Y   ++L 
Sbjct: 660 IEKGWTGAASEGGYVFSRTLRSVTQVANLDATLLASQEARRLAERAETLREIYEEPVTLA 719

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
             GD+ ++ GP  L + + + GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ 
Sbjct: 720 RKGDETELYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVK 779

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D + ADDLF +LMGD VEPRREFIQEN+L    LD+
Sbjct: 780 DTTDADDLFVKLMGDVVEPRREFIQENALSVANLDV 815


>gi|213155387|ref|YP_002317432.1| DNA gyrase, B subunit [Acinetobacter baumannii AB0057]
 gi|260558096|ref|ZP_05830307.1| DNA gyrase, B subunit [Acinetobacter baumannii ATCC 19606]
 gi|301345942|ref|ZP_07226683.1| DNA gyrase, B subunit [Acinetobacter baumannii AB056]
 gi|301594683|ref|ZP_07239691.1| DNA gyrase, B subunit [Acinetobacter baumannii AB059]
 gi|332873310|ref|ZP_08441265.1| DNA gyrase, B subunit [Acinetobacter baumannii 6014059]
 gi|213054547|gb|ACJ39449.1| DNA gyrase, B subunit [Acinetobacter baumannii AB0057]
 gi|260408450|gb|EEX01757.1| DNA gyrase, B subunit [Acinetobacter baumannii ATCC 19606]
 gi|332738516|gb|EGJ69388.1| DNA gyrase, B subunit [Acinetobacter baumannii 6014059]
          Length = 822

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/814 (50%), Positives = 540/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648
           +     +  + ++  +    F  + + +       A +           L   +     +
Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    V      +   ++L+   + S         S    +       L 
Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|184156322|ref|YP_001844661.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU]
 gi|183207916|gb|ACC55314.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii ACICU]
          Length = 822

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/814 (50%), Positives = 540/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALYISADAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648
           +     +  + ++  +    F  + + +       A +           L   +     +
Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    V      +   ++L+   + S         S    +       L 
Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|212211673|ref|YP_002302609.1| DNA gyrase subunit B [Coxiella burnetii CbuG_Q212]
 gi|212010083|gb|ACJ17464.1| DNA gyrase subunit B [Coxiella burnetii CbuG_Q212]
          Length = 810

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/812 (49%), Positives = 541/812 (66%), Gaps = 13/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +     YD+ +I++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 3   MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ DGS +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL
Sbjct: 62  CSHIWVTIHADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 121

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L + I++ GN+Y  ++  G+   PL VTG + + TGTE+ F PS+ 
Sbjct: 122 HGVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 180

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+YD L  RLREL+FLN  V+I L D+RS   R     Y+GGI+AFV +L++ K
Sbjct: 181 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR +
Sbjct: 239 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V
Sbjct: 299 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              L  +L E+P +A+II  KV+DA+  R+AAR+ARD+TRRK VLD+  LPGKLADC E+
Sbjct: 359 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   ELFLVEGDSAGGSAKQ R R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 419 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 479 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 538

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + + K  QYVKD+ +L+  L+  +L             I  + L N         + 
Sbjct: 539 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 598

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653
           I      +    +++ +           ++E  ++   +L  +LN    ++   +     
Sbjct: 599 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWRQRLEEQLNEPKTENSLRYQTAIK 658

Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                     +V  I  G+ +Q +           ++     N+I         ++ N  
Sbjct: 659 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 718

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  +T     L+     G+KG+++QRYKGLGEMN  QLWETT++ ++R LL V I DA  
Sbjct: 719 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 778

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD++F+ LMGD+VEPRR FI++N+L    LD+
Sbjct: 779 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 810


>gi|239503906|ref|ZP_04663216.1| DNA gyrase, B subunit [Acinetobacter baumannii AB900]
          Length = 822

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/814 (50%), Positives = 539/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQ-------------EINVSLASKLANRLNFIAEK 648
           +     +  + ++  +    F  + +              E    L   L   +     +
Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVEKLQPSLRPEITLETFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    V      +   ++L+   + S         S    +       L 
Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|169794210|ref|YP_001712003.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
           baumannii AYE]
 gi|215481765|ref|YP_002323947.1| DNA gyrase, B subunit [Acinetobacter baumannii AB307-0294]
 gi|301512866|ref|ZP_07238103.1| DNA gyrase, B subunit [Acinetobacter baumannii AB058]
 gi|332854716|ref|ZP_08435503.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013150]
 gi|332865596|ref|ZP_08436436.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013113]
 gi|169147137|emb|CAM84996.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
           baumannii AYE]
 gi|213988939|gb|ACJ59238.1| DNA gyrase, B subunit [Acinetobacter baumannii AB307-0294]
 gi|332727873|gb|EGJ59275.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013150]
 gi|332735248|gb|EGJ66325.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013113]
          Length = 822

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/814 (50%), Positives = 539/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQ-------------EINVSLASKLANRLNFIAEK 648
           +     +  + ++  +    F  + +              E    L   L   +     +
Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWAYQVREAVQRLQPSLRPEITLETFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    V      +   ++L+   + S         S    +       L 
Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|254496738|ref|ZP_05109597.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           drancourtii LLAP12]
 gi|254354033|gb|EET12709.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           drancourtii LLAP12]
          Length = 805

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/811 (50%), Positives = 551/811 (67%), Gaps = 14/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    ++SYD+ +I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MS---VDASYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H+EEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CKEIFVTIHSDESISVKDDGRGIPVDIHQEEGRSAAEVILTILHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G IYE  + +G+ D P+ VTG A N+TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSEELHLTVRRHGKIYEQHYRHGVPDAPIAVTGDA-NNTGTQIWFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELS+LNS V I L D+RS   R+ T  Y+GGI+AFV +L++HK
Sbjct: 177 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERS--QRQDTFHYEGGIQAFVEHLNKHK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +      +   +DNI ++L+M+WND Y E + CFTNNIPQ+DGGTH++G R+ALTR +
Sbjct: 235 TVITPVVFSMIAEKDNIVVELSMQWNDSYQETLYCFTNNIPQRDGGTHMAGFRAALTRTL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+SVVES V
Sbjct: 295 NNYIEAEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKSVVESSV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++  + +L E+P  AK IV K++DA+  R+AARRAR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 SEKFNDFLLENPAIAKAIVSKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML+SQE+ TLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLASQEVATLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG D ++ +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ   L+  G++YI +PP
Sbjct: 475 LGCGIGPDEYNPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK  QYVKD+E+L DYL   +L             I+   L + +    +++K+
Sbjct: 535 LYKVKRGKQEQYVKDDEALFDYLTQSALDGAAFYPAKDAPAITAMALEDLVQQFRRVEKI 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWH---- 654
           IK +   +    +++     V   E    +E  V+   +L   L  I  K+E+       
Sbjct: 595 IKRYKRRYPTDILKRIAYLPVLQNEDFSQEEKIVNWCKQLHLSLQQIDSKTEQYQVEAHA 654

Query: 655 -GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     +     G+     +     +S   K      +++         +     +
Sbjct: 655 LVDTNLFVPRIIVTQHGMDNYIPMTAEFFYSKDYKEMVALGSKLTSLVEEGSFVKRADKE 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + +      L  +    ++G ++QRYKGLGEMN  QLWETT++P  R +L+V I D   A
Sbjct: 715 LAVENFEQALAWLMDEAKRGQTIQRYKGLGEMNPEQLWETTMDPAARRMLQVSIEDGVAA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D +F+ LMGD VEPRR+FI+ N+L +  +D+
Sbjct: 775 DAIFTTLMGDNVEPRRDFIESNALDAENIDV 805


>gi|330876358|gb|EGH10507.1| DNA gyrase subunit B [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 805

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKYKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   + D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVHDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V       E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|330964178|gb|EGH64438.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 805

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   + D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVHDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V       E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|297537200|ref|YP_003672969.1| DNA gyrase subunit B [Methylotenera sp. 301]
 gi|297256547|gb|ADI28392.1| DNA gyrase, B subunit [Methylotenera sp. 301]
          Length = 809

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/813 (49%), Positives = 540/813 (66%), Gaps = 14/813 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++N          YD+ SI+IL+GLDAV+KRP MYIGDT   SGLHHM++EVLDNAIDE
Sbjct: 1   MAENQPELKPVSPDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQ 111
           +L G+ D I VT++ D S +VSDNGRGIPTD+      E   SAAE++MT LHAGGKF+Q
Sbjct: 61  ALAGHCDDIKVTIHSDNSISVSDNGRGIPTDIKDDDKHEPKRSAAEIVMTELHAGGKFDQ 120

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS WL+L+I R+G +++M F  G+  +PLV TG      GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSDWLRLKIYRQGKVHQMEFQRGVAVSPLVQTG-TTEKRGT 179

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV FL S + F + +++++ L  R+RELSFLN+ V+I L+D+R+ +       Y GGI+ 
Sbjct: 180 EVHFLASVETFVLVEYHFEILAKRIRELSFLNNGVKIELVDQRTGKS--ENFAYSGGIKG 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y++R K  L        G +D ++I++AM+WND Y E V CFTNNIPQ+DGGTHL+G
Sbjct: 238 FVEYMNRTKTVLHPKTFYAMGEKDGMTIEVAMQWNDSYSETVQCFTNNIPQRDGGTHLTG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR +  Y+E+S  +KK K    GDD REG   VLS+K+PDP+FSSQTK+KLVSSE
Sbjct: 298 LRTAMTRTLNQYIEQSDIAKKAKVETTGDDMREGICCVLSVKVPDPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ VV   V+  L+ +L E+P +AKIIV KV+DA+  R+AAR+AR++TRRKGV+D   LP
Sbjct: 358 VQPVVSEVVSAKLAEFLAENPADAKIIVGKVVDAARAREAARKAREITRRKGVMDTMGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP K E++LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDK+L S
Sbjct: 418 GKLADCQERDPAKCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLGS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           QEI TLITALGT IG+  F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM  L+  
Sbjct: 478 QEIATLITALGTSIGKADFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + +GK  +Y+KD++ L+ YL+  +L            VI+   L    
Sbjct: 538 GHIYIAQPPLYKVKQGKDERYLKDQQELDQYLLQSALKGAELTTKTGAEVITGAPLAEIA 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              +  + +I+     +D++ +      G  +  S +E     A+KL   L  I      
Sbjct: 598 KQMVLTEAVIRRIAALYDESVLRAMQDLGEMSL-STKETTEIAAAKLRPILGAIGSDVIV 656

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            +        + + +   G  +  V++   + S   +     S  ++        +    
Sbjct: 657 GFDKEAGAHRLEINKYVHGNLQCCVIDAEFLGSGDYRQISKMSVMLQGLLGEGALIKRGE 716

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            +  IT     LD +    +  +++QRYKGLGEMN SQLWETT++P  R LL+V+I DA 
Sbjct: 717 KEQTITTFKQALDWLLEEAKHNLNIQRYKGLGEMNPSQLWETTMDPTVRRLLKVQIDDAI 776

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            AD++F+ LMGD+VEPRR FI+ N+L    LDI
Sbjct: 777 AADEIFTTLMGDQVEPRRAFIESNALGVGNLDI 809


>gi|322506191|gb|ADX01645.1| DNA gyrase subunit B [Acinetobacter baumannii 1656-2]
          Length = 822

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/814 (50%), Positives = 540/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648
           +     +  + ++  +    F  + + +       A +           L   +     +
Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    V      +   ++L+   + S         S    +       L 
Sbjct: 668 RENAQGEKSVHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|28867247|ref|NP_789866.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968438|ref|ZP_03396581.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato T1]
 gi|301384274|ref|ZP_07232692.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato Max13]
 gi|302063876|ref|ZP_07255417.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato K40]
 gi|302131959|ref|ZP_07257949.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28850481|gb|AAO53561.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926726|gb|EEB60278.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato T1]
 gi|331017722|gb|EGH97778.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 805

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   + D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVHDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V       E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDVRLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|330987022|gb|EGH85125.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 805

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/810 (50%), Positives = 545/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQKPMKIVGES-DTTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V     + E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|289628211|ref|ZP_06461165.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649101|ref|ZP_06480444.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330870078|gb|EGH04787.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 805

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/810 (50%), Positives = 545/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V     + E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|193075924|gb|ABO10501.2| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 822

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/814 (50%), Positives = 540/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648
           +     +  + ++  +    F  + + +       A +           L   +     +
Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    V      +   ++L+   + S         S    +       L 
Sbjct: 668 RENAQGEKSAHYWPRVTVYIHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|257485596|ref|ZP_05639637.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 805

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/810 (50%), Positives = 545/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V     + E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|237801661|ref|ZP_04590122.1| DNA gyrase subunit B [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024520|gb|EGI04576.1| DNA gyrase subunit B [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 805

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGPALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V       E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|296932705|gb|ADH93506.1| DNA gyrase subunit B [Pseudomonas sp. In5]
          Length = 807

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/810 (49%), Positives = 542/810 (66%), Gaps = 12/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEE-NTNTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TGT++ F PS  
Sbjct: 120 HGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTGTQIHFKPSDL 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 179 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 237 TPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 297 NTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD++++E+Y+   +L +      +    IS   L   ++D   + K 
Sbjct: 537 LYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNEEAPGISGEALERLVNDFRLVMKT 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  +     + E   D        ++   RL  + +     K+    
Sbjct: 597 LKRLSRLYPQELTEHFIYLPAVSMEQLSDHAAMQDWMARFEVRLRTVEKSGLVYKASLRE 656

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       ++         +     K
Sbjct: 657 DRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVVSLGAQLSTLLDDGAYIQRGERK 716

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L+ + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 717 KPVTEFKEALEWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLKVTIEDAIGA 776

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 777 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 806


>gi|262371170|ref|ZP_06064491.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262313900|gb|EEY94946.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 823

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/814 (50%), Positives = 544/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L G+ 
Sbjct: 12  TEQTTEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGHC 71

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 72  DEILVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L+L I R G+I++  + +G    PL V G+  + TGT V F PS++ 
Sbjct: 132 GVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPVYPLTVVGNT-DTTGTTVRFWPSAET 190

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y+++ K 
Sbjct: 191 FSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--HAEHVFDYEGGLSEFVKYINQGKT 248

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L         + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 249 HLNDIFHFTVQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 308

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 309 SYMENENLLKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 368

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 369 KSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 428

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 429 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 488

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G++YI +PPL
Sbjct: 489 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGYIYIAQPPL 548

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E      D+   I    L N I D     K +
Sbjct: 549 YKLKKGKQEQYLKDNDALETYLISNAIDELELHISDAAPAIRGEALANVIADYQTSQKSL 608

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648
           +     +  + ++  +    F  + + +       A +           L   L+    +
Sbjct: 609 QRLTVRYPASVLDALISVEGFKLDQNHDRAYVEQWAEQVRSAVAEIQPSLRPELSLETFE 668

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +    I      +      +   ++L+   + S         S            L 
Sbjct: 669 KELADGQKIETYLPRITIYVHNLPHSYLLDAGLLGSGEYARLLKNSKSWFTLLEDGAYLQ 728

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               KI +T    +   I S  R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 729 KGDRKIAVTNFHQVWQHILSDSRRGMMIQRYKGLGEMNADQLWETTMDPENRNMLQVTIQ 788

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 789 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 822


>gi|330961508|gb|EGH61768.1| DNA gyrase subunit B [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 805

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/810 (50%), Positives = 544/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V       E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRMGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|71735115|ref|YP_272319.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555668|gb|AAZ34879.1| DNA gyrase, B subunit [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320331107|gb|EFW87078.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330881905|gb|EGH16054.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 805

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/810 (50%), Positives = 545/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V     + +   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLDQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|89052495|ref|YP_507946.1| DNA gyrase subunit B [Jannaschia sp. CCS1]
 gi|88862044|gb|ABD52921.1| DNA gyrase subunit B [Jannaschia sp. CCS1]
          Length = 805

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/797 (58%), Positives = 577/797 (72%), Gaps = 3/797 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G+AD +TVT
Sbjct: 9   DDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVTVT 68

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S +VSDNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 69  LHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSV 128

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL+LRI R+G  +   F  G    PL V    G+ TGTEV F+ S++ FS  D+
Sbjct: 129 VNALSDWLELRIWRDGKEHIARFEGGFTTKPLEVVSECGDRTGTEVRFMASTETFSNLDY 188

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            + TL++RLREL+FLNS V+I L D+R  E  E  +FY+GG+  FV YLDR K   M+ P
Sbjct: 189 VFKTLENRLRELAFLNSGVRIILRDERPAEALESDLFYEGGVREFVRYLDRSKTSAMEEP 248

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTHL+G R ALTR I  Y + S
Sbjct: 249 IFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRTINLYAQSS 308

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ L  W
Sbjct: 309 GIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLQEW 368

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EEHP EA++IV K+++A++ R+AAR+AR+LTRRK  +DIASLPGKLADC E+DP KSEL
Sbjct: 369 FEEHPHEARVIVSKIVEAALAREAARKARELTRRKTAMDIASLPGKLADCQEKDPSKSEL 428

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FLVEGDSAGGSAKQGRSR NQA+LPLRGKILNVERARFD+ML SQEIGTLITALGTGIG+
Sbjct: 429 FLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSQEIGTLITALGTGIGR 488

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D F+I+KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G+LYI +PPLY ++RG
Sbjct: 489 DEFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQPPLYKVSRG 548

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           KS  Y+KDE +LEDYL+ Q +         S   I+  DL   +  A    +++  F  +
Sbjct: 549 KSEVYLKDETALEDYLVAQGVEGASLRLS-SGEEIAGQDLARVVTGARNFKRILDAFPTH 607

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-NNSDILVKR 666
           + +  +EQA ++G F+          +A  +A RL+ +A + E+ W+G I  +  I + R
Sbjct: 608 YPRRIVEQAALAGAFDAGKADADLQGVADDVAKRLDLVAVEYERGWNGRITQDHGIRLSR 667

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
           + RGV+E   L+G+ + S  ++     S      Y    +L        I GP  LL  I
Sbjct: 668 VLRGVEEIRTLDGAVLRSGEARKLAEVSKDSRTVYQDPATLTRKDRVQLIHGPTELLKAI 727

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
              G KG  MQRYKGLGEMN  QLWETTL+ + R+LL+VKI D + ADD+F++LMGD VE
Sbjct: 728 LDEGAKGQQMQRYKGLGEMNPDQLWETTLDHEARTLLQVKIDDLADADDIFTKLMGDVVE 787

Query: 787 PRREFIQENSLPS-ALD 802
           PRREFIQ N+L    LD
Sbjct: 788 PRREFIQNNALSVENLD 804


>gi|50083301|ref|YP_044811.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ADP1]
 gi|49529277|emb|CAG66989.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ADP1]
          Length = 822

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/814 (50%), Positives = 536/814 (65%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L+L I R G I+E  + +G    PL V G     TGT V F PS D 
Sbjct: 131 GVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPQYPLKVVGETS-TTGTTVRFWPSGDT 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVKIVLRDERV--NFEHIYAYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L         S + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNDIFHFTADSDNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 SYLENENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE +LI+ ++ +           I+   L   IDD     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETFLISNAIDDLALHISAEAPAITGEALAKVIDDYKISQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGSINN 659
           +     +  T ++  +    F  +   +       A +L   +  +              
Sbjct: 608 QRLTQRYPATLLDGLLEVEPFKADLSHDRPYVEQWAEQLGQVIAKLQPSLRPEVSLESFE 667

Query: 660 SD-----------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            +             +      +   ++L+   + S         S    +       L 
Sbjct: 668 RESPTGETSIHCWPRITVYVHNLPHHYLLDAGLLNSAEYARLLKNSKSWFKLLEEGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I+++    +   I    R+G+ +QRYKGLGEMNA QLWETT++PD R +L+V I 
Sbjct: 728 KGERRIQVSNFHQVWQQILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPDNRHMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|85713968|ref|ZP_01044957.1| DNA gyrase, B subunit [Nitrobacter sp. Nb-311A]
 gi|85699094|gb|EAQ36962.1| DNA gyrase, B subunit [Nitrobacter sp. Nb-311A]
          Length = 813

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/805 (57%), Positives = 597/805 (74%), Gaps = 6/805 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++++    Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 12  TESVAPLEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 71

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 72  TAVEVILNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L LRI R+   + + F NG    PL V G A    GTEVTFL S++ 
Sbjct: 132 GVGVSVVNALSSKLILRIWRKDKEHLIEFANGDALAPLKVVGDANGKRGTEVTFLASTET 191

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  ++++ TL+HRLREL+FLNS V I L D R    R   M Y+GG+  FV YLDR+KK
Sbjct: 192 FTSVEYDFATLEHRLRELAFLNSGVNILLSDMRHAVERREQMMYEGGVVEFVKYLDRNKK 251

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            ++  PI I+   + IS++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ 
Sbjct: 252 AMVADPIMIRAEMNGISVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVN 311

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y +    ++K++ ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N
Sbjct: 312 GYAD--AMARKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVIN 369

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+AW EEHP EAK+IV KV++A+  R+AAR+AR+LTRRKG LD+ASLPGKLADC ERD
Sbjct: 370 EALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLPGKLADCQERD 429

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITAL
Sbjct: 430 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITAL 489

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI  G LYI +PPL
Sbjct: 490 GTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAGHLYIAQPPL 549

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +TRGKS +Y+KDE +LEDYLI   L  +      +       DL   ++DA  I  ++
Sbjct: 550 YKVTRGKSERYLKDERALEDYLIETGLD-DCVFKLATGEDRGGRDLLALVEDARVIRNVL 608

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSINN 659
           ++ +  +++  IEQA I+GV N    + +    + A  +A RL+ +A++ E+ W G    
Sbjct: 609 QNLHNRYNRKVIEQAAIAGVLNPRVTENLATANAAADYIAKRLDALADEVERGWTGRFAE 668

Query: 660 S-DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                 +R  RGV+E  +++ + + S  ++    ++ +++E Y     L     +  I G
Sbjct: 669 GQGFFFERTVRGVKEVAMIDDALLGSADARKLDEYAAKLQEAYPRPGLLRRKDTETAIHG 728

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P SL + +   GRKG+++QRYKGLGEMN  QLWETTL+   RSLL+VKI +  +ADD+F+
Sbjct: 729 PVSLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDAGERSLLQVKIKEVDEADDIFT 788

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
           +LMGD VEPRREFIQ+NSL + +D+
Sbjct: 789 KLMGDVVEPRREFIQDNSLSANVDV 813


>gi|119503576|ref|ZP_01625659.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2080]
 gi|119460638|gb|EAW41730.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2080]
          Length = 809

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/812 (49%), Positives = 542/812 (66%), Gaps = 14/812 (1%)

Query: 1   MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+DN    + +YD+DSI++LKGLDAV+KRP MYIGDTD  +GLHHM++E++DN+IDE+L 
Sbjct: 1   MTDNSTQGSGNYDSDSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALA 60

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I+V ++ D S +V D+GRGIPT++H EEG+SAAEVIMT LHAGGKF+  +YKVSG
Sbjct: 61  GHCSKISVVIHPDESVSVGDDGRGIPTEMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I+R+G ++E  + +G+   PL V G     TGT V F PS
Sbjct: 120 GLHGVGVSVVNALSEHLQLTIRRQGELHEQVYKHGVPVAPLAVVGETE-STGTSVRFKPS 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++ F+  +F++D L  RLREL+FLNS V I L D+RS   R  T  Y GG+ AFV +L++
Sbjct: 179 AETFTNIEFHFDILGKRLRELAFLNSGVCIELTDERSA--RTETYAYDGGLNAFVEFLNK 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  + +       +  ++ +++A++WND + EN+LC+TNNIPQ+DGGTHL+G R+ALTR
Sbjct: 237 GKNTINKVFHCETIADGDVGVEVALQWNDSFQENILCYTNNIPQRDGGTHLAGFRAALTR 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+EK   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+  VE 
Sbjct: 297 TLNNYIEKESLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKPAVEQ 356

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +      +L E+P +AK++V K++DA+  R+AAR+ARD+TRRKG LDIA LPGKLADC 
Sbjct: 357 SLGKIFGEYLLENPQDAKLVVGKMIDAARAREAARKARDMTRRKGALDIAGLPGKLADCQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ERDP   EL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKML S E+G ++
Sbjct: 417 ERDPALCELYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVERARFDKMLGSAEVGNIV 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG GIG+  F+ +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM  LI  G +YI +
Sbjct: 477 TALGCGIGKTEFNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMRELIDRGHVYIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY +TRGK  QY+KDE + ++YL   +L             I+   L   +      +
Sbjct: 537 PPLYKLTRGKQSQYLKDEAAFDNYLTQNALEGAALYVNQDAPPITGEGLEALVKTYHAAE 596

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEK-----SEK 651
            +I      +  T + Q       + ++   Q    S   +L+ RL  +++K     +E 
Sbjct: 597 GVINRLCRVYAPTVLWQLPFIAPLDVDAMGDQPTMQSFCDELSERLQTVSDKAQNFSAEL 656

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
                  +   +V +I+  +  + +L  S   S          N+I              
Sbjct: 657 RQDPERGHWYPVVTQISHSIATEIILGRSFFASKDYATLVECGNKIRGLIEVSGYFKRGE 716

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            + +     + L  +    RKG ++QRYKGLGEMN  QLWETT++PD R +L+V I DA 
Sbjct: 717 KQFQTQEFAAGLGWLLQEARKGTAVQRYKGLGEMNPGQLWETTMDPDVRRMLKVTIEDAI 776

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            AD +F+ LMGD+VEPRREFI+EN+L    LD
Sbjct: 777 LADQMFTTLMGDDVEPRREFIEENALAVENLD 808


>gi|298484612|ref|ZP_07002717.1| DNA gyrase subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160869|gb|EFI01885.1| DNA gyrase subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 805

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/810 (50%), Positives = 545/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V     + E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFNEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|90421533|ref|YP_529903.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB18]
 gi|90103547|gb|ABD85584.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB18]
          Length = 813

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/804 (58%), Positives = 597/804 (74%), Gaps = 6/804 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +      Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A 
Sbjct: 13  EASAPVEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 72

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V LN DGS TV D+GRGIP  +HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 73  AVEVVLNADGSVTVRDDGRGIPVGIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHG 132

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALSS L+LR+ R+G  + + F +G    PLVV G +    GTEVTFL S + F
Sbjct: 133 VGVSVVNALSSKLQLRVWRDGKEHFIEFAHGDAVAPLVVVGDSNGKRGTEVTFLASPETF 192

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +  ++++ TL+HRLREL+FLNS V I L D R P  +   M Y+GG+E FV YLDR+KK 
Sbjct: 193 THIEYDFATLEHRLRELAFLNSGVTIVLSDLRHPVEKREEMMYRGGVEEFVKYLDRNKKA 252

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++ +PI I    + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+  
Sbjct: 253 MVPAPIMIAAELNGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNG 312

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +    +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+
Sbjct: 313 YAD--VIAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNE 370

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+AW EEHP EAKIIV KV++A   R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP
Sbjct: 371 ALAAWFEEHPAEAKIIVGKVIEAGAAREAARKARELTRRKGALDIASLPGKLADCQERDP 430

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKML S++IGTLITALG
Sbjct: 431 AKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLGSEQIGTLITALG 490

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG+D FDI+KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMPSLI  GFLYI +PPLY
Sbjct: 491 TGIGRDDFDISKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPSLIEGGFLYIAQPPLY 550

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +TRGKS QY+KDE +LEDYLI   L  +      S    S  DL   ++DA +I   + 
Sbjct: 551 KVTRGKSEQYLKDERALEDYLIETGLD-DCVFKLASGEDRSSRDLLALVEDARQIRGTLH 609

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGS-INN 659
           + +  ++++ +EQA I+GV N     ++      A+ +A RL+ +A++ E+ W G  +  
Sbjct: 610 NLHSRYNRSVVEQAAIAGVLNPRVTADLATANEAAAYIARRLDALADEVERGWVGRFVEG 669

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
                +R  RGV++  +++ + + S  ++    ++  ++E Y     L     +  I GP
Sbjct: 670 EGFSFERTVRGVKDVAMIDAALLSSADARKLDEYAVNLQEAYPRPGILRRKDTETPIHGP 729

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            SL + +   GRKG+++QRYKGLGEMN  QLW TTL+ + RSLL+VK+ +  +ADD+F++
Sbjct: 730 VSLFEAVTDAGRKGVALQRYKGLGEMNPEQLWHTTLDTNARSLLQVKVREVDEADDIFTK 789

Query: 780 LMGDEVEPRREFIQENSLPSALDI 803
           LMGD VEPRREFIQ+NSL + +D+
Sbjct: 790 LMGDVVEPRREFIQDNSLSANVDV 813


>gi|169632033|ref|YP_001705769.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
           baumannii SDF]
 gi|169150825|emb|CAO99425.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
           baumannii]
          Length = 822

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/814 (50%), Positives = 539/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ + S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEEESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQ-------------EINVSLASKLANRLNFIAEK 648
           +     +  + ++  +    F  + +              E    L   L   +     +
Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVEKLQPSLRPEITLETFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    V      +   ++L+   + S         S    +       L 
Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|312958106|ref|ZP_07772629.1| DNA topoisomerase II:ATP-binding region [Pseudomonas fluorescens
           WH6]
 gi|311287537|gb|EFQ66095.1| DNA topoisomerase II:ATP-binding region [Pseudomonas fluorescens
           WH6]
          Length = 805

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/810 (49%), Positives = 543/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSE---ENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD++++E+Y+   +L +      D    IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  +     + E   D        ++   RL  + +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFIYLPAVSLEQLGDHAHMQDWLAQYEVRLRTVEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       ++         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDDGAYIQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            ++      LD + +   K  ++QRYKGLGEMN  QLWETT++P  R +LRV I DA  A
Sbjct: 715 KQVKEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|77456232|ref|YP_345737.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf0-1]
 gi|77380235|gb|ABA71748.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf0-1]
          Length = 805

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/810 (49%), Positives = 543/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSE---ENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVKDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+
Sbjct: 118 HGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD++++E+Y+   +L +      +    IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNEDAPGISGEALERLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  +     + E   D        ++   RL  + +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFIYLPAVSLEMLGDHAKMQDWLAQYEVRLRTVEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                     V+ I+ G+            S   K       ++         +     K
Sbjct: 655 DRERGVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDEGAYIQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     LD + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KAVTEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|262374722|ref|ZP_06067994.1| DNA gyrase, B subunit [Acinetobacter junii SH205]
 gi|262310378|gb|EEY91470.1| DNA gyrase, B subunit [Acinetobacter junii SH205]
          Length = 822

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/814 (50%), Positives = 539/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEILVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L I+R G I+E  + +G    PL V G   + TGT V F PS   
Sbjct: 131 GVGVSVVNALSKKLHLTIQRAGQIHEQEYCHGDPQYPLKVVGKT-DKTGTTVRFWPSELT 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   F+ D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFSVDILARRLRELSFLNAGVRIVLRDERV--NLENVYDYEGGLSEFVKYINEGKT 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTTDADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 SYMENENLLKKEKVAVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAARRAR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARRAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADSPAITGEALAKVIADYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFI-----------AEK 648
           +     +  + ++  +    F  + + E     S A +L   +  +           + +
Sbjct: 608 QRLTLRYPASLLDGLLELEAFKADHNHEREYVESWAEQLRAAIEKLQPSLRPEISLESFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E S      +    V      +   ++L+   + S         +        T   L 
Sbjct: 668 RENSHGEKSVHYWPRVTVYVHNLPHSYLLDAGLLNSAEYARLLKNAKSWFTLLETGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R +L+V I 
Sbjct: 728 KGDRRIQVNSFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRHMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|323516067|gb|ADX90448.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 822

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/814 (49%), Positives = 540/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQ++GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQDVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648
           +     +  + ++  +    F  + + +       A +           L   +     +
Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    V      +   ++L+   + S         S    +       L 
Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|226942154|ref|YP_002797228.1| DNA gyrase subunit B [Laribacter hongkongensis HLHK9]
 gi|226717081|gb|ACO76219.1| GyrB [Laribacter hongkongensis HLHK9]
          Length = 797

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/802 (49%), Positives = 536/802 (66%), Gaps = 8/802 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y ADSI++LKGLDAV+KRP MYIGDT   +GLHHM++EVLDN+IDE+L G+AD +
Sbjct: 1   MSEQEYGADSIKVLKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNSIDEALAGHADTV 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N D S +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF+  SYK+SGGLHGVG
Sbjct: 61  RVTINPDNSVSVEDNGRGIPTDIHPEEGRSAAEVIMTILHAGGKFDNNSYKISGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS WL+L+I R+G ++EM F  G    PL VTG   +  GTEVTF+ S++ F  
Sbjct: 121 VSVVNALSDWLRLKIWRDGKVHEMEFRRGEPVAPLKVTGQTTH-RGTEVTFMASTETFGT 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +++YD L  R+RELSFLN+ V I+L D+   +       + GG+  FV Y++R+K  L 
Sbjct: 180 IEYHYDILAKRIRELSFLNNGVGITLADRLHGKE--ENFAFSGGVAGFVEYMNRNKTVLH 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                  G ++ +++++AM+WND Y ENV CFTNNIPQ+DGGTHL+ LR  +TR +  Y+
Sbjct: 238 PKVFHTIGDKEGMTVEVAMQWNDSYQENVQCFTNNIPQRDGGTHLTALRQVMTRTLNQYI 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E++  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +++ L
Sbjct: 298 EENDIAKKAKVETTGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEIISEAL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P++AK I  K+++A+  R+AAR+AR++TRRKGV+D   LPGKLADC E+DP  
Sbjct: 358 KTFLLENPVDAKTITGKIVEAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPAL 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKM++SQE+ TLITA+GT 
Sbjct: 418 CELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMIASQEVATLITAMGTS 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +
Sbjct: 478 IGKDDYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKL 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK  +Y+KD+  L  YL+  +L     +  +    IS + L       L    +I+  
Sbjct: 538 KHGKQERYLKDDSELNQYLLELALDNARLIPREGADPISGDTLGTLARQYLAARAVIERE 597

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
               D   ++  +     + ES+     ++A  L + L       E       +   + +
Sbjct: 598 SRVIDPLALDAMMRVPALSLESEAGARQTVA-VLEHALQQAPVTLEPVHDEKNDGWLVRI 656

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSL 722
                G      L+   + S      R  S+ +    +   ++I  G+     ++     
Sbjct: 657 VHHLHGNATTTYLDQDFLESADYTVLRQTSDLLA-GLIGPGAVIRRGESNGRTVSEFGMA 715

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           LD +    R+G+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  ADD+F+ LMG
Sbjct: 716 LDWLMGEVRRGMSIQRYKGLGEMNPGQLWETTMDPSVRRLLKVRIEDAMAADDVFTTLMG 775

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRR FI+ N+L +  +DI
Sbjct: 776 DQVEPRRHFIESNALIARNIDI 797


>gi|330970328|gb|EGH70394.1| DNA gyrase subunit B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 805

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDETLAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V       E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|302185843|ref|ZP_07262516.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae 642]
          Length = 805

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/810 (49%), Positives = 542/810 (66%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++  E  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAGEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V       E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +      L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|229587582|ref|YP_002869701.1| DNA gyrase subunit B [Pseudomonas fluorescens SBW25]
 gi|229359448|emb|CAY46289.1| DNA gyrase subunit B [Pseudomonas fluorescens SBW25]
          Length = 805

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/810 (49%), Positives = 542/810 (66%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSE---ENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD++++E+Y+   +L +      D    IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGEALERLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  +     + E   D        ++   RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFIYLPSVSLEQLGDHAHMQEWLAQYEVRLRTSEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       ++         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDDGAYIQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            ++      LD + +   K  ++QRYKGLGEMN  QLWETT++P  R +LRV I DA  A
Sbjct: 715 KQVKEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|209363643|ref|YP_001423444.2| DNA gyrase subunit B [Coxiella burnetii Dugway 5J108-111]
 gi|207081576|gb|ABS76986.2| DNA gyrase subunit B [Coxiella burnetii Dugway 5J108-111]
          Length = 810

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/812 (49%), Positives = 540/812 (66%), Gaps = 13/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +     YD+ +I++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 3   MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL
Sbjct: 62  CSHIWVTIHADCSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 121

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L + I++ GN+Y  ++  G+   PL VTG + + TGTE+ F PS+ 
Sbjct: 122 HGVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 180

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+YD L  RLREL+FLN  V+I L D+RS   R     Y+GGI+AFV +L++ K
Sbjct: 181 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR +
Sbjct: 239 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V
Sbjct: 299 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              L  +L E+P +A+II  KV+DA+  R+AAR+ARD+TRRK VLD+  LPGKLADC E+
Sbjct: 359 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   ELFLVEGDSAGGSAKQ R R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 419 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 479 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 538

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + + K  QYVKD+ +L+  L+  +L             I  + L N         + 
Sbjct: 539 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 598

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653
           I      +    +++ +           ++E  ++   +L  +LN    ++   +     
Sbjct: 599 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRYQTAIK 658

Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                     +V  I  G+ +Q +           ++     N+I         ++ N  
Sbjct: 659 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 718

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +  +T     L+     G+KG+++QRYKGLGEMN  QLWETT++ ++R LL V I DA  
Sbjct: 719 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 778

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD++F+ LMGD+VEPRR FI++N+L    LD+
Sbjct: 779 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 810


>gi|307825353|ref|ZP_07655572.1| DNA gyrase, B subunit [Methylobacter tundripaludum SV96]
 gi|307733528|gb|EFO04386.1| DNA gyrase, B subunit [Methylobacter tundripaludum SV96]
          Length = 821

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/806 (49%), Positives = 537/806 (66%), Gaps = 9/806 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
                 YD+ +IQ+LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L GY   
Sbjct: 19  TTAAPEYDSTNIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCKE 78

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + V ++ +GS +VSD+GRGIP D+HKEEG+SAAEVIMT LHAGGKF+  +YKVSGGLHGV
Sbjct: 79  VRVIIHSNGSVSVSDDGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNAYKVSGGLHGV 138

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L +++ G +Y+  +  G    PL   G A   +GT + F PS++ F+
Sbjct: 139 GVSVVNALSEELNLEVRKNGQLYKQQYRMGNPVAPLAAVGPAE-GSGTLINFKPSTETFT 197

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+YD L  RLRELSFLNS V+ISL D+RS   R+    ++GGI AFV +L+++K PL
Sbjct: 198 DVEFHYDILAKRLRELSFLNSGVRISLEDERSD--RQDVFEFEGGIGAFVVHLNKNKTPL 255

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                     ++ + +++AM+WND Y ENV C+TNNIPQ+DGG+HL+G R ALTR I  Y
Sbjct: 256 FPEVFHFVAEKEGVVVEIAMQWNDSYQENVFCYTNNIPQRDGGSHLAGFRGALTRTINQY 315

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E S  +KK+K    GDD REG T+VLS+K+PDP+FSSQTK+KLVSSE++ +VES +N+ 
Sbjct: 316 IESSGLAKKEKVQTTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEIKPIVESTMNEK 375

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L E P  AK IV K+++A+  R+AAR+ARDLTRRK  LDIA LPGKLADC E+DP 
Sbjct: 376 LQEFLLEKPQIAKAIVGKIVEAARAREAARKARDLTRRKTTLDIAGLPGKLADCQEKDPA 435

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKM+SS+E+GTLITALG 
Sbjct: 436 LSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMISSEEVGTLITALGC 495

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D +++ KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQ+P ++  G++YI +PPLY 
Sbjct: 496 GIGKDEYNLAKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQLPEIVEKGYIYIAQPPLYK 555

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK   YVKD+  L +YLI  +L +       S   I    L        ++D +   
Sbjct: 556 VKKGKQEHYVKDDAQLNEYLIQLALDKAQLFTDVSAPPIQGQGLEKLAKLFTEVDSINNR 615

Query: 604 FYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI---N 658
               +D+ F+EQ     V + E   DQ+   +    +  RL     K+           N
Sbjct: 616 LSRRYDEIFLEQFAYMDVISDELKQDQQKLAAWFVDMEQRLTDCDSKAIYIVELDYKTSN 675

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  ++V +    + + FVL  +            ++      +     +     +  ++ 
Sbjct: 676 DFSVVVNKRLHAITKTFVLPSTFFNGKDYHKIAQYAKDTAGMFNEDSFMQMGERQQPVSN 735

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
                + +    +KG  +QRYKGLGEMN  QLWETTL+ + R LL+V+I D   AD++F+
Sbjct: 736 FKQAFEWMMKEIKKGQHIQRYKGLGEMNPEQLWETTLDSNNRRLLQVRIEDVIAADEIFT 795

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR+FI +N+L    LD+
Sbjct: 796 TLMGDVVEPRRDFIVKNALDVTNLDV 821


>gi|253995377|ref|YP_003047441.1| DNA gyrase subunit B [Methylotenera mobilis JLW8]
 gi|253982056|gb|ACT46914.1| DNA gyrase, B subunit [Methylotenera mobilis JLW8]
          Length = 805

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/809 (49%), Positives = 543/809 (67%), Gaps = 10/809 (1%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+N   +  YD+ SI+IL+GLDAV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G
Sbjct: 1   MSENNAISPDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEE----GISAAEVIMTRLHAGGKFNQKSYK 115
           + D I V ++ D S +VSDNGRGIPTD+ +++      SAAE++MT LHAGGKF+Q SYK
Sbjct: 61  HCDDIKVIIHPDNSVSVSDNGRGIPTDIKQDDIKAVKRSAAEIVMTELHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I R G +++M F  G    PL  TG   +  GTEV F
Sbjct: 121 VSGGLHGVGVSVVNALSDWLKLKIYRNGKVHQMEFRRGEAVAPLAETGVT-DKKGTEVHF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S + F + +++++ L  R+RELSFLN+ V+I LID+R+ +       Y GGI+ FV Y
Sbjct: 180 LASVETFVLVEYHFEILAKRIRELSFLNNGVKIELIDQRNGKS--ENFAYSGGIKGFVEY 237

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++R K  L        G +D ++I++AM+WND Y E V CFTNNIPQ+DGGTHL+GLR+A
Sbjct: 238 MNRSKTVLHPKTFYASGEKDGMTIEVAMQWNDSYSETVQCFTNNIPQRDGGTHLTGLRTA 297

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR +  Y+E+S  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ V
Sbjct: 298 MTRTLNQYIEQSELAKKAKVETTGDDMREGITCVLSVKVPDPKFSSQTKDKLVSSEVQPV 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V   L+ +L+E+P +AKII  KV++A+  R+AAR+AR++TRRKGV+D   LPGKLA
Sbjct: 358 VSEIVAAKLAEFLQENPADAKIICGKVVEAARAREAARKAREITRRKGVMDTMGLPGKLA 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP   E++LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDK+LSSQEI 
Sbjct: 418 DCQEKDPALCEIYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKLLSSQEIA 477

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGT IG+  F   KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM  L+  G +Y
Sbjct: 478 TLITALGTSIGKADFSAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY + +G+  +Y+KDE+ L+ YL+  +L         S G++    L       +
Sbjct: 538 IAQPPLYKVKQGRDERYLKDEQELDIYLLQSALKNAELDTKTSAGILKDEALSAIAKQVV 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
             + +I+     +D++ +     +G  +  ++   N ++A KL   L  +  +   ++  
Sbjct: 598 LTEAVIRRISSLYDESVLRAIQDAGEIDLSTEASAN-AIAEKLRPILGAVGSEVIVAFDA 656

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             N   + + +   G  +  V+    + S   +     SN +         +  N  +  
Sbjct: 657 ETNAYRLEINKYVHGNLQCCVINAEFLNSGDYRQLLKTSNMLNGLVGAGAIVKRNDKEQT 716

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I+     LD +    +  +++QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD+
Sbjct: 717 ISTFKQALDWLQGEAKNTLNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVQIDDAIAADE 776

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +F+ LMGD VEPRR FI+ N+L    LD+
Sbjct: 777 IFTTLMGDNVEPRRAFIESNALGVGNLDV 805


>gi|320321691|gb|EFW77790.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. B076]
          Length = 807

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/813 (50%), Positives = 547/813 (67%), Gaps = 18/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
           +K     + +   E  V     + +   D E   +  +    RL    EKS   +  S+ 
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLDQLSDHEGMQAWLALFDARL-RTGEKSGLVYKASLR 653

Query: 659 NSD--------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
                        V+ I+ G+            S   K       +I         +   
Sbjct: 654 EDRERNVWLWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRG 713

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             K  +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA
Sbjct: 714 ERKKPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDA 773

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
             AD +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 774 IGADQIFNTLMGDAVEPRRDFIESNALAVSNLD 806


>gi|167644129|ref|YP_001681792.1| DNA gyrase subunit B [Caulobacter sp. K31]
 gi|167346559|gb|ABZ69294.1| DNA gyrase, B subunit [Caulobacter sp. K31]
          Length = 830

 Score =  910 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/810 (55%), Positives = 569/810 (70%), Gaps = 18/810 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            +    Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A  
Sbjct: 29  EVMTGDYSADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATK 88

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + V LN DGS TV+D+GRGIP D+H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGV
Sbjct: 89  VEVILNADGSVTVTDDGRGIPVDIHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 148

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND----------TGTEV 173
           GVSVVNALS WL+L+I R G+ Y+M F  G     L  TG +             TGTEV
Sbjct: 149 GVSVVNALSDWLELKIHRNGHSYQMRFERGDAVTSLAQTGDSPVRADGPKAGTTLTGTEV 208

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           TF PS + F+  +F+  TL+HRLREL+FLNS V I   D R  EP E  + Y+GGIEAFV
Sbjct: 209 TFYPSLETFAFIEFDRKTLEHRLRELAFLNSGVTIYFRDLRDAEPWEEKLHYEGGIEAFV 268

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +LD+ K PL++ PI I+G +D + +DLA+ WND YHE++LCFTNNIPQ+DGGTHLS  R
Sbjct: 269 RHLDKAKTPLLKMPIVIRGRKDKVEVDLALWWNDSYHEHMLCFTNNIPQRDGGTHLSAFR 328

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR IT+Y E S  +KK+K +V G+D REG T VLS+K+PDP+FSSQTK+KLVSSEVR
Sbjct: 329 GALTRIITNYAESSGITKKEKVNVGGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 388

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VE  V +GL++W EEHP EAK IV K+ +A+  R+AAR+AR+LTRRK  LDI SLPGK
Sbjct: 389 PAVEGLVQEGLASWFEEHPNEAKAIVSKIAEAAAAREAARKARELTRRKSALDITSLPGK 448

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCSERDP KSE+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNVERARFDKMLSS +
Sbjct: 449 LADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSDQ 508

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IGTLITALG GIG+D F+ +K+RYHKI++MTDADVDGAHIRTLLLTFF+RQMP LI  G+
Sbjct: 509 IGTLITALGAGIGRDDFNADKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERGY 568

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY   +GKS +Y+KD+  ++ +L+++ +         S    +  DL   +  
Sbjct: 569 IYIAQPPLYKAAKGKSSRYLKDDFEMDAFLVDEGVDGAELDLA-SGERRTTQDLLALVQL 627

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
                  I           IEQA ++G+F    D           A RL+  AE+ +  W
Sbjct: 628 CRSAKGNIDRLSQRAPAFAIEQAALAGLFGEAPDIAAA-------AKRLDLYAEEGDGPW 680

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
            G   ++  + KRI RGV E  VL+   + +  ++     +  + E +            
Sbjct: 681 SGERGDTAYVFKRIRRGVTESVVLDDGLLHAADARRWAERATALAEVFSGPAIFRRKDKS 740

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             + GP  LL  +   GRKG+S+QRYKGLGEMN  QLWETTL+ + R+LL+V++  A  A
Sbjct: 741 TTVRGPLDLLGAVLDAGRKGLSIQRYKGLGEMNPDQLWETTLDVEARTLLQVRVNHADDA 800

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           DD+FSRLMGD VEPRREFIQEN+L + +D+
Sbjct: 801 DDMFSRLMGDLVEPRREFIQENALDAEVDV 830


>gi|188474273|gb|ACD49736.1| DNA gyrase subunit B [Vibrio mimicus]
          Length = 778

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/780 (50%), Positives = 533/780 (68%), Gaps = 10/780 (1%)

Query: 22  DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81
           DAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I VT++ D S +VSD+GR
Sbjct: 1   DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIHEDNSVSVSDDGR 60

Query: 82  GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141
           GIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R
Sbjct: 61  GIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYR 120

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
            G I+  ++ +G+   PL V G     TGT V F PS+  F+  +F+YD L  RLRELSF
Sbjct: 121 GGKIHTQTYHHGVPQAPLSVVGETE-RTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSF 179

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISID 260
           LNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ +        R++ IS++
Sbjct: 180 LNSGVSIRLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVE 238

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K   SKK + +  GD
Sbjct: 239 VAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGD 298

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK +  
Sbjct: 299 DAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCS 358

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 359 KIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 418

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           QGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 419 QGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 478

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           IIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + +GK  QY+KDE+++ 
Sbjct: 479 IIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEDAMN 538

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
            Y +  ++             ++   L   +       KL++     +    + + +   
Sbjct: 539 QYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIYVP 598

Query: 621 VFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQE 673
             N +  +D+    +   +L  +LN     + +       +  +N     V+    GV  
Sbjct: 599 RINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYLPKVQVRTHGVTH 658

Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733
           +++L    I S         S  ++        +        I+   + L+ +    R+G
Sbjct: 659 EYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAAALEWLIKESRRG 718

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +S+QRYKGLGEMN  QLWETT++PDTR +++V I DA  AD+LF+ LMGD+VEPRR F++
Sbjct: 719 LSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFTTLMGDQVEPRRNFME 778


>gi|87121026|ref|ZP_01076918.1| DNA gyrase, B subunit [Marinomonas sp. MED121]
 gi|86163864|gb|EAQ65137.1| DNA gyrase, B subunit [Marinomonas sp. MED121]
          Length = 807

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/810 (50%), Positives = 540/810 (66%), Gaps = 14/810 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I
Sbjct: 1   MSENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S TVSDNGRGIP ++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  NVTIHPDESITVSDNGRGIPVEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L I+++G +YE  + +G    P+ V G A    GT+V F PS+D FS 
Sbjct: 121 VSVVNALSESLTLTIRKDGKLYEQHYSHGDPLAPIAVIGDAE-ANGTQVHFKPSADTFSN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F YD L  RLRELSFLNS V I+L D+RS +    +  Y GG+ +FV +L+ +K P+ 
Sbjct: 180 IKFYYDILAKRLRELSFLNSGVAINLKDERSGQE--ESFNYTGGLRSFVEHLNTNKTPIN 237

Query: 245 QSPIRIQGS---RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           Q    I       D I++++A++WN+G+ EN+ C+TNNIPQ+DGGTHL+G R+ALTR + 
Sbjct: 238 QIFHFICQRDDLDDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRAALTRTLN 297

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +++EK    KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  ++
Sbjct: 298 AFIEKEGLGKKTKVATTGDDSREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMS 357

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             LS +L E P EAKIIV K++DA+  R+AARRARDLTRRKG LDIA LPGKLADC E+D
Sbjct: 358 RRLSEYLLESPGEAKIIVNKMIDAARAREAARRARDLTRRKGALDIAGLPGKLADCQEKD 417

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITAL
Sbjct: 418 PALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITAL 477

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG+D F++ KLRYH I+IMTDADVDG+HIRTLLLTFFFRQMP +I  G +YI +PPL
Sbjct: 478 GCGIGRDEFNVEKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEVIERGHIYIAQPPL 537

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I RGK  QY+KDE +LE +LI  +LS       D    I    L   + D ++I   I
Sbjct: 538 YKIARGKQEQYLKDEAALEQHLIEVALSGAQMFVNDQAPGIQGEALAKIMHDYIEISDDI 597

Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWH 654
                 +    + + +       +   ++    +   +L   +          + +    
Sbjct: 598 DRMSRVYPTDVMGKLMYCTELTSDDLSNEAKVNAWTDELKALMPQDVRTGFRFEFKVDHD 657

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
              +     V+ ++ GV   +  E +   S   +     S+ I E +     +       
Sbjct: 658 DERDLYLPAVEIMSHGVANHYRFEQTFFASAEYRRMVAMSDLINEIFTEESFIKRGERTQ 717

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +     +   +     +G+++QRYKGLGEMN  QLWETT++PD R +L+V I DA  AD
Sbjct: 718 HVDTVEDMKAWLMKEASRGMAIQRYKGLGEMNPDQLWETTMDPDARRMLQVSIDDAIAAD 777

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +F+ LMGDEVEPRR FIQ+N+L    LD+
Sbjct: 778 QMFTTLMGDEVEPRRNFIQDNALSVANLDV 807


>gi|83591344|ref|YP_425096.1| DNA gyrase subunit B [Rhodospirillum rubrum ATCC 11170]
 gi|83574258|gb|ABC20809.1| DNA gyrase subunit B [Rhodospirillum rubrum ATCC 11170]
          Length = 802

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/803 (56%), Positives = 572/803 (71%), Gaps = 5/803 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y ++SI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L GY D  
Sbjct: 1   MTQQAYTSESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDHS 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V LN DGS TV DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVG
Sbjct: 61  EVILNGDGSVTVCDNGRGIPVDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS WL LRI R+G  + + F +G +  PL V G  G+ TGTE+TFL S  IF++
Sbjct: 121 VSVVNALSDWLDLRIWRDGKEHYVRFEHGEVVAPLKVVGDCGDRTGTEITFLASPAIFAI 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             ++Y TL+HRLREL+FLNS V++ L DKR  EPR     Y GGIE FV YLD+ K  L 
Sbjct: 181 TTYDYATLEHRLRELAFLNSGVRLLLTDKRGTEPRTTKFHYDGGIEEFVRYLDKSKTVLH 240

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             P+   G RD + ++L++ W D YHE VLCFTNNIPQ+DGGTH++G R  LTR + SY 
Sbjct: 241 SPPVTAIGERDGMIVELSLEWTDSYHETVLCFTNNIPQRDGGTHMAGFRGGLTRTLNSYA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           + S   KK+K ++ GDD REG T VLS+K+PDP+FSSQTKEKLVSSEVR VVE+ V + L
Sbjct: 301 QDSGLMKKEKVTLTGDDMREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPVVEAVVVERL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WLEEHP EA+ I+ KV++A+  R+AARRAR+LTRRKG LD+ASLPGKLADC  RDP +
Sbjct: 361 GQWLEEHPQEARKIIGKVVEAAAAREAARRARELTRRKGALDMASLPGKLADCQNRDPAQ 420

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGR R  QAILPLRGKILNVERARFDKMLSS EIGTLI ALGTG
Sbjct: 421 SELFIVEGDSAGGSAKQGRDRGYQAILPLRGKILNVERARFDKMLSSAEIGTLIAALGTG 480

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D FD+ K RYHKIIIMTDADVDG+HIRTLLLTFFFRQMP ++  G+LYI +PPLY  
Sbjct: 481 IGKDDFDVGKARYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEVVEKGYLYIAQPPLYRA 540

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RG S QY+KD+  LEDYL++  L  E      +   ++  DLR  ++ A      I   
Sbjct: 541 KRGNSEQYLKDDRELEDYLLDTGLD-ETVYTTAAGVQMAGPDLRALVERARLARNAIAAM 599

Query: 605 YPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSINN-SD 661
                   +EQA ++G F+ E  +D     + A+ +A R++ +    E+ W G++     
Sbjct: 600 GRKVPWVLLEQAAVAGAFHTEIVNDDARASAAAADVARRIDALESPLERGWTGTLAAGGG 659

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
           ++ +R  RGV E  V++   I S  ++     +  + E Y     L        I GP +
Sbjct: 660 MVFQRTLRGVTETHVIDPQVIHSTEARRLDSMAAALREFYEQPGRLRIKDGDQIIPGPMT 719

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L++ + + GRKGI++QRYKGLGEMN  QLWETTL+P+ R LL+VK+   S A+D+FS LM
Sbjct: 720 LINAVMAAGRKGIAIQRYKGLGEMNPEQLWETTLDPNVRRLLQVKVNQVSDAEDVFSTLM 779

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           GD VEPRR+FIQ+N+L    LD+
Sbjct: 780 GDIVEPRRDFIQDNALNVQNLDV 802


>gi|253997716|ref|YP_003049779.1| DNA gyrase subunit B [Methylovorus sp. SIP3-4]
 gi|253984395|gb|ACT49252.1| DNA gyrase, B subunit [Methylovorus sp. SIP3-4]
          Length = 799

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/801 (49%), Positives = 535/801 (66%), Gaps = 8/801 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + YD+ SI+IL+GLDAV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+ D I V 
Sbjct: 2   TDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVI 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEE----GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           ++ D S +VSDNGRGIPTD+  ++      SAAE++MT LHAGGKF+Q SYKVSGGLHGV
Sbjct: 62  IHPDNSVSVSDNGRGIPTDIKHDDIKAVKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS WLKL+I R G +++M F  G    PL +TG      GTEV FL S + F 
Sbjct: 122 GVSVVNALSDWLKLKIYRNGQVHQMEFRRGEAVAPLAITG-TTERKGTEVHFLASIETFG 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + +F+++ L  R+RELSFLN+ V+I LID+R+ +       + GG+  FV Y++R K  L
Sbjct: 181 LVEFHFEILAKRIRELSFLNNGVKIELIDQRNGKS--ENFAHSGGVRGFVEYMNRSKTVL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              P    G +D ++I+++M+WND Y E V CFTNNIPQ+DGGTHL+GLR+A+TR + +Y
Sbjct: 239 HPKPFYAVGEKDGMTIEVSMQWNDSYAETVQCFTNNIPQRDGGTHLTGLRTAMTRTLNNY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E++  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVS EV+ VV+  V   
Sbjct: 299 IEQNELAKKAKIETTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSGEVQPVVQEVVAAK 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P++AK+I  K++DA+  RDAAR+AR++TRRKG +D   LPGKLADC ERDP 
Sbjct: 359 LAEFLLENPVDAKVICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLADCQERDPT 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDK+LSSQEI TLITA+GT
Sbjct: 419 KCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIATLITAMGT 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D F  +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM  L+  G +YI +PPLY 
Sbjct: 479 GIGKDDFSADKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIYIAQPPLYK 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  +Y+KD++ L+ YL+  SL     L  +    ++   L       +  + +I+ 
Sbjct: 539 VKQGKDERYLKDQQELDQYLLQSSLKGAELLTREGGETLAGEQLAEIAKQMVLTEAVIRR 598

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
               +D++ +              +    ++A KL   L     +   +         + 
Sbjct: 599 LASLYDESVLRALQNVEGTVELDTEANANAVAEKLRPLLGHTGSEVIVAQDLETGTYRLE 658

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V +   G  +  V++   + S   +     S  ++       S+        ++   + L
Sbjct: 659 VNKYVHGNLQSCVVDTDFLASGDYRQISKMSVMLQGLLGEGASIKRGEKSQPVSNFKAAL 718

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D +    +  +++QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F+ LMGD
Sbjct: 719 DWLLEEAKHNLNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVQIDDAIAADEIFTTLMGD 778

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +VEPRR FI+ N+L    LDI
Sbjct: 779 QVEPRRAFIESNALGVNNLDI 799


>gi|161618113|ref|YP_001592000.1| DNA gyrase subunit B [Brucella canis ATCC 23365]
 gi|260567232|ref|ZP_05837702.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161334924|gb|ABX61229.1| DNA gyrase, B subunit [Brucella canis ATCC 23365]
 gi|260156750|gb|EEW91830.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 813

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/815 (59%), Positives = 621/815 (76%), Gaps = 14/815 (1%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+     +   + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F
Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV Y
Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D+ KK L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQIT Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VN+ LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLA
Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G
Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           TLITALGT IG+     F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G
Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY +TRGKS QY+K+E + ED+LI   L E          + +  DLR+ ++
Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
           DA  + +L+   +  +D++ +EQA I+G+ N +   D       A  +A RL+ I+E++E
Sbjct: 599 DARMLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658

Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + W G +  +     +R+ RGV++  +L+ + + S  ++     + R+ E ++    L  
Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWET L+P+ RSLL+VK+ D
Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETILDPNVRSLLQVKVND 778

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A+ AD LFSRLMGDEVEPRREFIQ+N+L    LD+
Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813


>gi|331011884|gb|EGH91940.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 805

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/810 (50%), Positives = 544/810 (67%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT L AGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLRAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V     + E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|289207191|ref|YP_003459257.1| DNA gyrase subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288942822|gb|ADC70521.1| DNA gyrase, B subunit [Thioalkalivibrio sp. K90mix]
          Length = 810

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/811 (49%), Positives = 549/811 (67%), Gaps = 13/811 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S+ +   +YD+  I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ 
Sbjct: 4   SEPLDPETYDSSQIRVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC 63

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D + +VSDNGRGIP D+H+EEG SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 64  DTIEVTIHEDNAVSVSDNGRGIPVDIHEEEGKSAAEVILTVLHAGGKFDNNSYKVSGGLH 123

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L+L I R G  +E  +  G+ D PL V GS  + TGT + F PS +I
Sbjct: 124 GVGVSVVNALSEELRLEIHRAGERHEQVYHLGVPDAPLAVAGST-DRTGTRIWFRPSDEI 182

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  +F+Y+ L  RLRELSFLNS V+I+L D+R  + RE T  ++GGI AFV +L++ K 
Sbjct: 183 FTDIEFHYEILAKRLRELSFLNSGVRITLRDQR--DNREETFLFEGGIRAFVEHLNQKKT 240

Query: 242 PLMQSPIRIQGSR-DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            L  + I    +R D+  +++A++WND Y EN+ C+TNNIPQ+DGGTH++G R+ALTR +
Sbjct: 241 ALHPTVIYANQTREDDYVVEVALQWNDSYQENIFCYTNNIPQRDGGTHMAGFRAALTRTV 300

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+EK    KK K +  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +VES +
Sbjct: 301 NQYLEKEGLIKKAKVATAGDDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPIVESVL 360

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +D L+ +L E+P EAK I  KVL+A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 361 SDALTNFLLENPPEAKAITDKVLEAARAREAARKAREVTRRKGALDIAGLPGKLADCQEK 420

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVERARFD+ML S E+GTLITA
Sbjct: 421 DPAHSELYLVEGDSAGGSAKQGRDRHFQAILPLKGKILNVERARFDRMLGSAEVGTLITA 480

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D +D +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G +YI +PP
Sbjct: 481 LGCGIGKDEYDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHVYIAQPP 540

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I RGK  QYV+DE  + + +++ +L             ++       +    K  + 
Sbjct: 541 LYKIKRGKREQYVRDEAEMGEIVVSLALDGAALHPGPDAPPVTGEAFEELVKGYQKAARA 600

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK----SEKSWHGS 656
           ++     +D   +   + +     E     N  + +  +  L  I+      +  S    
Sbjct: 601 VERLGRLYDSRILWAMLEADAI-PEPRSVTNPDVQAWFSRILESISSDRAGATRYSLGPV 659

Query: 657 INNSD---ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
            N      + + R+  G      +   ++ S   +     S R+     +   +      
Sbjct: 660 TNVDGHAQLSLDRLEHGAALSQYITDDTLASRDFQTILDLSARLNALLESGAYIKRGERV 719

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            +I G    ++ +   GR+G++ QRYKGLGEMN  QLWETT+NP+TR LL+V++ DA +A
Sbjct: 720 HRIQGFSEAMEWLLQEGRRGLATQRYKGLGEMNPEQLWETTMNPETRRLLQVRVEDAIRA 779

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D++F+ LMGD+VEPRR+FI+  +L +  +D+
Sbjct: 780 DEIFTTLMGDQVEPRRDFIESRALSAENVDV 810


>gi|75674203|ref|YP_316624.1| DNA gyrase subunit B [Nitrobacter winogradskyi Nb-255]
 gi|74419073|gb|ABA03272.1| DNA gyrase subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 813

 Score =  909 bits (2350), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/805 (57%), Positives = 597/805 (74%), Gaps = 6/805 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++++    Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 12  TESVAAIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 71

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + V LN D S TV D+GRGIP D+HK EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 72  TAVEVILNADNSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L LRI R    + + F NG    PL V G A    GTEVTFL S++ 
Sbjct: 132 GVGVSVVNALSSKLTLRIWRRDKEHLIEFANGDALAPLKVVGDANGRRGTEVTFLASTET 191

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  ++++ TL+HRLREL+FLNS V I L D R    R   M Y+GG+  FV YLDR+KK
Sbjct: 192 FTNIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVERREQMMYEGGVVEFVKYLDRNKK 251

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            ++  PI ++   + IS++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ 
Sbjct: 252 AMVADPIMVRAEMNGISVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVN 311

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y +    +KK++ ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N
Sbjct: 312 GYAD--AMAKKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVIN 369

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+AW EEHP EAK+IV KV++A+  R+AAR+AR+LTRRKG LD+ASLPGKLADC ERD
Sbjct: 370 EALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLPGKLADCQERD 429

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITAL
Sbjct: 430 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITAL 489

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI  G LYI +PPL
Sbjct: 490 GTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAGHLYIAQPPL 549

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +TRGKS +Y+KDE +LEDYLI   L  +      +       DL   +DDA  I  ++
Sbjct: 550 YKVTRGKSERYLKDERALEDYLIETGLD-DCVYKLATGEDRGGRDLLALVDDARVIRNVL 608

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGS-IN 658
           ++ +  +++  IEQA I+GV N    + +    + A  +A RL+ +A++ E+ W G  + 
Sbjct: 609 QNLHGRYNRGVIEQAAIAGVMNPRITENLATATAAADYIARRLDALADEVERGWVGRFVE 668

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                 +R  RGV++  +++ + + S  ++    ++ R++E Y     L     +  I G
Sbjct: 669 GQGFFFERTVRGVKDVAMIDDALLGSADARKLDEYAGRLQEAYPRPGLLRRRDTETAIHG 728

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P SL + +   GRKG+++QRYKGLGEMN  QLWETTL+   RSLL+VKI +  +ADD+F+
Sbjct: 729 PVSLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDVSERSLLQVKIKEVDEADDIFT 788

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
           +LMGD VEPRREFIQ+NSL + +D+
Sbjct: 789 KLMGDVVEPRREFIQDNSLSANVDV 813


>gi|77163566|ref|YP_342091.1| DNA gyrase, B subunit [Nitrosococcus oceani ATCC 19707]
 gi|254435249|ref|ZP_05048756.1| DNA gyrase, B subunit [Nitrosococcus oceani AFC27]
 gi|76881880|gb|ABA56561.1| DNA gyrase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207088360|gb|EDZ65632.1| DNA gyrase, B subunit [Nitrosococcus oceani AFC27]
          Length = 807

 Score =  909 bits (2350), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/809 (50%), Positives = 542/809 (66%), Gaps = 13/809 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             +++YD+  I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + I
Sbjct: 2   KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNEI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           ++ ++ D S T+SDNGRGIPTD+H+EEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 62  SIIIHSDDSITISDNGRGIPTDIHQEEGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS+ L L I R+G IY+  +  G+   PLV  G     +GT + F PS  IFS 
Sbjct: 122 VSVVNALSAVLFLEIHRDGKIYQQHYQEGVPQGPLVAVG-TTERSGTTIRFSPSPKIFSN 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D    RLREL+FLNS V+I L D+R    R+   FY+GGI AFV +L+++K PL 
Sbjct: 181 IVFSFDIFAKRLRELAFLNSRVRILLEDERIG--RKEEFFYEGGISAFVEHLNKNKTPLH 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +    QG RD ++++LAM+WND Y E+  CFTNNIPQ+DGGTHL+G RSALTR +  Y+
Sbjct: 239 GNVFYFQGERDGVAVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRSALTRTLNQYI 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           EK   +KK K    GDD REG T+VLSIK  DP+FSSQTKEKLVSSEV+ VV+S V++  
Sbjct: 299 EKEALAKKTKVGTTGDDAREGLTAVLSIKAQDPKFSSQTKEKLVSSEVKPVVDSLVSEHF 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L EHP++AK I  K+++A+  R+AAR+AR+LTRRKG LD+A LPGKLADC ERDP  
Sbjct: 359 QNFLLEHPVDAKAIGGKMIEAARAREAARKARELTRRKGALDMAGLPGKLADCQERDPTL 418

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELFLVEGDSAGGSAKQGR R NQAILPL+GKILNVE+ARFDKMLSS E+ TLITALG G
Sbjct: 419 SELFLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLSSVEVATLITALGCG 478

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI +PPLY +
Sbjct: 479 IGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKV 538

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RGK  QY++D+  +E YLIN S         +    I+   L     D  ++ + I+  
Sbjct: 539 KRGKQEQYIRDDAEMERYLINLSTDNAKIYSENGATSIAGETLSTLFTDYFQLRRAIERL 598

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE---------KSEKSWHG 655
              +D   ++Q +   V    +D  I +    + A +L   +          + E +   
Sbjct: 599 SYRYDPLLLDQMLYLDVVPTPADPMIEIKQLEEWATQLEIRSNSAAKGNARYEIEVATVP 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             +   + VK    GV     +      S   +  +    R+  +      +     +  
Sbjct: 659 ENSAPVLQVKITRHGVTAYQRIYMDFFTSPDYQRIQNLGKRLVNSVKAESYVQRGDRRQL 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +      +D +    R+G ++QRYKGLGEMN  QLWETT+NP TR L +V+I D   AD+
Sbjct: 719 VNDIQEAVDWLMEEARRGQAVQRYKGLGEMNPDQLWETTMNPATRRLSQVRIDDVITADE 778

Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           +F+ LMGD VEPRR+FI+ ++L  A LD+
Sbjct: 779 IFTTLMGDHVEPRRDFIESHALSVAHLDV 807


>gi|91974486|ref|YP_567145.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5]
 gi|91680942|gb|ABE37244.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5]
          Length = 813

 Score =  909 bits (2350), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/799 (58%), Positives = 600/799 (75%), Gaps = 6/799 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A  + V 
Sbjct: 18  AEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATAVEVV 77

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV
Sbjct: 78  LNADGSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSS L LR+ R G  + + F +G    PL + G A    GTEVTF  S + F+  ++
Sbjct: 138 VNALSSKLILRVWRNGKEHIIEFAHGDAVAPLSMVGDANGRRGTEVTFFASPETFTHIEY 197

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++ TL+HRLREL+FLNS V I L D R    +   M Y+GG+  FV YLDR+KKP++ +P
Sbjct: 198 DFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMRYEGGVTEFVKYLDRNKKPIVPAP 257

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I +    + I +++A+ WN+ YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQ+  Y + +
Sbjct: 258 IVLAADLNGIGVEVALWWNETYHENVLCFTNNIPQRDGGTHLAGFRAALTRQVNGYADSN 317

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ L+AW
Sbjct: 318 --AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAW 375

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EEHP EAK+IV KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP KSEL
Sbjct: 376 FEEHPSEAKVIVGKVIEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPSKSEL 435

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKML S++IGTLITALGTGIG+
Sbjct: 436 FIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLGSEQIGTLITALGTGIGR 495

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI  GFLYI +PPLY +TRG
Sbjct: 496 DDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGFLYIAQPPLYKVTRG 555

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           KS QY+KDE +LEDYLI+  L + I     S    S  DL   +++A  +   + + +  
Sbjct: 556 KSEQYLKDERALEDYLISTGLDDCIFRPA-SGEERSGRDLLALVENARIVRGTLHNLHSR 614

Query: 608 HDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGSINNSD-ILV 664
           ++++ +EQA I+GV N     +I      A+ +A RL+ +A++ E+ W G     +    
Sbjct: 615 YNRSVVEQAAIAGVLNPRITSDIPTANEAAAYIARRLDALADEVERGWVGRFTEGEGFSF 674

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
           +R  RGV++  +++ + + S  ++    ++  ++E Y     L     +  I GP SL +
Sbjct: 675 ERTVRGVKDVAIIDDALLGSADARKLDEYAAILQEAYPRPGVLRRKDTETAIHGPVSLFE 734

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +   GRKG+S+QRYKGLGEMN SQLWETTL+ + RSLL+VK+ +  +ADDLF++LMGD 
Sbjct: 735 AVTDAGRKGVSLQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDLFTKLMGDV 794

Query: 785 VEPRREFIQENSLPSALDI 803
           VEPRREFIQENSL + +D+
Sbjct: 795 VEPRREFIQENSLSATVDV 813


>gi|316931400|ref|YP_004106382.1| DNA gyrase subunit B [Rhodopseudomonas palustris DX-1]
 gi|315599114|gb|ADU41649.1| DNA gyrase, B subunit [Rhodopseudomonas palustris DX-1]
          Length = 813

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/799 (58%), Positives = 599/799 (74%), Gaps = 6/799 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A  + V 
Sbjct: 18  AEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHASAVEVI 77

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV
Sbjct: 78  LNADGSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSS L LR+ R+G  + + F +G    PL V G AG   GTEVTF  SS+ F+  ++
Sbjct: 138 VNALSSKLILRVWRDGKEHYIEFAHGDAVAPLSVVGDAGGRRGTEVTFYASSETFTNVEY 197

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++ TL+HRLREL+FLNS V I L D R    +   M Y+GG+  FV YLDR+KKP++ +P
Sbjct: 198 DFATLEHRLRELAFLNSGVNILLSDLRHAVEKREEMRYEGGVTEFVKYLDRNKKPIVPTP 257

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I +    + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQ+T Y + +
Sbjct: 258 IVVAADLNGIAVEAALWWNDTYHENVLCFTNNIPQRDGGTHLAGFRAALTRQLTGYADNN 317

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ L+AW
Sbjct: 318 --AKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAW 375

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EEHP EAK IV KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP KSEL
Sbjct: 376 FEEHPSEAKTIVGKVIEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPSKSEL 435

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITALGTGIG+
Sbjct: 436 FIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGTGIGR 495

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FDI KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI  G+LYI +PPLY +TRG
Sbjct: 496 DDFDIGKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGYLYIAQPPLYKVTRG 555

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           KS QY+KDE +LEDYLI   L  +      +     + DL   ++DA  I   + + +  
Sbjct: 556 KSEQYLKDERALEDYLIATGLD-DCVFKLATGEERGRRDLLKLVEDARAIRSTLNNLHSR 614

Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSINNSD-ILV 664
           ++++ +EQA I+GV +     +I      A+ +A RL+ +A++ E+ W G     +    
Sbjct: 615 YNRSVVEQAAIAGVLSPRVTADIATANEAAAYIARRLDALADEVERGWIGRFTEGEGFAF 674

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
           +R  RGV+E   ++ + + S  ++    ++  ++E Y     L     +  I GP SL +
Sbjct: 675 ERTVRGVKEVAAIDDALLGSADARKLDEYAAVLQEVYPRPGVLRRKDAETAIHGPISLFE 734

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +   GRKG+++QRYKGLGEMN  QLWETTL+ + RSLL+VK+ +  +ADD+F++LMGD 
Sbjct: 735 AVTDAGRKGVALQRYKGLGEMNPGQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDV 794

Query: 785 VEPRREFIQENSLPSALDI 803
           VEPRREFIQENSL + +D+
Sbjct: 795 VEPRREFIQENSLHATVDV 813


>gi|262380670|ref|ZP_06073823.1| DNA gyrase, B subunit [Acinetobacter radioresistens SH164]
 gi|262297618|gb|EEY85534.1| DNA gyrase, B subunit [Acinetobacter radioresistens SH164]
          Length = 822

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/814 (49%), Positives = 545/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +++ Q  +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ 
Sbjct: 11  TEHTQEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEILVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L+L ++R G I+E  + +G+   PL V G     TGT+V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQTE-RTGTKVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVRIVLCDERI--NLEHVFDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTTQAENGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 SYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELFLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+SS E+GTLITAL
Sbjct: 428 PALSELFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMISSAEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKI+IMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ +           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDDLSLHVSADAPAINGQALAQVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLN--------FIAEKSEK 651
                 +  T ++  +    F  +   D+        +L +R+          ++ +  +
Sbjct: 608 HRLTLRYPATLLDGLLALEAFKMDQNHDESYVQQWGEQLRSRIADMQSSLRPELSLEKFE 667

Query: 652 SWHGSINNSDI---LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
                  +S +    +      +   ++L+   + S         S            L 
Sbjct: 668 RIDADGQSSALYWPRITVYVHNLPHHYLLDAGLLGSAEYARLLKNSRSWFSLIEEGAYLE 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +++++    +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGERRVQVSNFHQVWQFILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|6116692|dbj|BAA85765.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 807

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/813 (49%), Positives = 550/813 (67%), Gaps = 16/813 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N   ++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MSEN---NTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I++T++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 58  CSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R   ++E  + +G    P   +G   + +GTEV F PS +
Sbjct: 118 HGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGGSAVPTARSGRRTDGSGTEVHFKPSPE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++AFV YL+ +K
Sbjct: 178 TFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNK 235

Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 236 TAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRN 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 296 LNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 356 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 416 KDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +P
Sbjct: 476 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + RGK  QY+KD++++E+Y+   +L +      +    +S   L   +++   +  
Sbjct: 536 PLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALEKLVNEYRGVIA 595

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
            +K     + +   E  +     + +   ++        K   RL   AEKS  ++  S+
Sbjct: 596 TLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTA-AEKSGLTYKASL 654

Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
                       V+ +A G+            S   +   +  +++         +    
Sbjct: 655 REDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGE 714

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            K  I+     LD + + G K  S+QRYKGLGEMN  QLWETT++P+ R +L+V I DA 
Sbjct: 715 RKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAI 774

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            AD +F+ LMGD VEPRR+FI+ N+L    LD+
Sbjct: 775 AADQIFNTLMGDAVEPRRDFIESNALAVSNLDV 807


>gi|119947311|ref|YP_944991.1| DNA gyrase, B subunit [Psychromonas ingrahamii 37]
 gi|119865915|gb|ABM05392.1| DNA gyrase subunit B [Psychromonas ingrahamii 37]
          Length = 809

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/811 (50%), Positives = 549/811 (67%), Gaps = 14/811 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EVLDN+IDE+L G+   I
Sbjct: 1   MAENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDETLAGFCTDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
             T++ DGS +V D+GRGIP D+H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  ITTIHTDGSVSVRDDGRGIPVDMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L +KR G+IY+ ++I+G+ + P+ + G     TGTE+ F PS + FS 
Sbjct: 121 VSVVNALSEKLRLTVKRHGHIYQQTYIHGVPEAPIAIIGDTE-QTGTELRFWPSKETFSD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD L  RLRELSFLNS V I L DKR  E +     Y+GGIEAFV+YL+++K P+ 
Sbjct: 180 TLFHYDILAKRLRELSFLNSGVSIKLFDKR-EEDKSDHFHYEGGIEAFVNYLNKNKTPIH 238

Query: 245 QSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q          D  ++++AM+WNDG+ EN+ CFTNNIPQKDGG+HL+G R ALTR + +Y
Sbjct: 239 QKIFHFSTDHEDGTNVEVAMQWNDGFQENIYCFTNNIPQKDGGSHLTGFRGALTRTLNNY 298

Query: 304 VEKSF---GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           +EK      + K+K +  G D REG T+V+S+K+PDP+FSSQTK++LVSSEVR VVE  +
Sbjct: 299 MEKEMGKVKNAKNKTATEGGDSREGLTAVISVKVPDPKFSSQTKDRLVSSEVRPVVEGAM 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EA+II  K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC E+
Sbjct: 359 NEHLQEFLLENPAEARIITGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQEK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGRSR+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 419 DPALSELYIVEGDSAGGSAKQGRSRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++  K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI NG++YI +PP
Sbjct: 479 LGCGIGRDEYNPEKTRYHHIIIMTDADVDGSHIRTLLLTFFFRQMPELIENGYIYIAQPP 538

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I +GK   YVKDE +++ +L   ++             IS  +L + I     +   
Sbjct: 539 LYKIKKGKQEDYVKDEAAMQAFLTRLAMENSSLHINSDAPGISGIELESMIQRYRSVQDT 598

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           I      +    + + +       ++  +  +    A+ +   LN         K+E   
Sbjct: 599 ITRLSRRYPSAMLNKLIYKPELTADNLANYSLVSEWANDIVATLNREDLGGTIYKTEVIK 658

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                 ++++V     GV  ++ L+     S G K      N I+        +     +
Sbjct: 659 SEDELTNNVIVIVRKHGVDNRYQLDEEFFGSSGYKSLVSLGNEIQNLLEEGAYIKRGERR 718

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            ++      ++ +    ++G+ +QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 719 KEVKNFIEAVNWLMHEAKRGLYIQRYKGLGEMNPGQLWETTMDPSARRMLQVTIQDAVGA 778

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D LFS LMGD VEPRREFI++N+L +  LDI
Sbjct: 779 DQLFSTLMGDHVEPRREFIEKNALRAENLDI 809


>gi|86747132|ref|YP_483628.1| DNA gyrase subunit B [Rhodopseudomonas palustris HaA2]
 gi|86570160|gb|ABD04717.1| DNA gyrase subunit B [Rhodopseudomonas palustris HaA2]
          Length = 813

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/799 (58%), Positives = 598/799 (74%), Gaps = 6/799 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A  + V 
Sbjct: 18  AEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATAVEVV 77

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV
Sbjct: 78  LNADGSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSS L LR+ R G  + + F +G    PL V G A    GTEVTF  S + F+  ++
Sbjct: 138 VNALSSKLVLRVWRNGKEHIIEFAHGDAVAPLSVVGDANGRRGTEVTFFASPETFTHIEY 197

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++ TL+HRLREL+FLNS V I L D R P  +   M Y+GG+  FV YLDR+KKP++ +P
Sbjct: 198 DFATLEHRLRELAFLNSGVNIVLSDMRHPVEKREEMRYEGGVTEFVKYLDRNKKPMVPAP 257

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I +    + I ++ A+ WN+ YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQ+  Y + +
Sbjct: 258 IVLAADLNGIGVEAALWWNETYHENVLCFTNNIPQRDGGTHLAGFRAALTRQVNGYADSN 317

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ L+AW
Sbjct: 318 --AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAW 375

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EEHP EAK+IV KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP KSEL
Sbjct: 376 FEEHPAEAKVIVGKVIEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPSKSEL 435

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKML S++IGTLITALGTGIG+
Sbjct: 436 FIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLGSEQIGTLITALGTGIGR 495

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FDI KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI  GFLYI +PPLY +TRG
Sbjct: 496 DDFDIAKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGFLYIAQPPLYKVTRG 555

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           KS QY+KDE +LE+YLI   L  +      S  V    DL   ++DA  I + + + +  
Sbjct: 556 KSEQYLKDERALEEYLIATGLD-DCAFKIASGEVRGGRDLLALVEDARVIRQTLHNLHGR 614

Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGS-INNSDILV 664
           ++++ +EQA I+GV +     ++      A+ +A RL+ +A++ E+ W G  +       
Sbjct: 615 YNRSVVEQAAIAGVLSPRITSDVATANEAAAYIARRLDALADEVERGWIGRFVEGEGFHF 674

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
           +R  RGV++  +++ + + S  ++    ++  ++E Y     L     +  I GP SL +
Sbjct: 675 ERTVRGVKDVAMIDDALLGSADARKLDEYAAVLQEVYPRPGVLRRKDAETAIHGPVSLFE 734

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +   GRKG+++QRYKGLGEMN SQLWETTL+ + RSLL+VK+ +  +ADD+F++LMGD 
Sbjct: 735 AVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDV 794

Query: 785 VEPRREFIQENSLPSALDI 803
           VEPRREFIQENSL + +D+
Sbjct: 795 VEPRREFIQENSLSATVDV 813


>gi|188474271|gb|ACD49735.1| DNA gyrase subunit B [Vibrio campbellii]
          Length = 778

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/780 (49%), Positives = 526/780 (67%), Gaps = 10/780 (1%)

Query: 22  DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81
           DAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I VT++ D S +V+D+GR
Sbjct: 1   DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVTDDGR 60

Query: 82  GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141
           GIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R
Sbjct: 61  GIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHR 120

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
            G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +F+YD L  RLRELSF
Sbjct: 121 GGHIHTQTYHHGEPQAPLAVIGET-DQTGTQIRFWPSAETFTNIEFHYDILAKRLRELSF 179

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISID 260
           LNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++        R++ I+++
Sbjct: 180 LNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVE 238

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   SKK K +  GD
Sbjct: 239 VAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGD 298

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  
Sbjct: 299 DAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCS 358

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 359 KIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 418

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           QGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 419 QGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 478

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           IIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + +GK  QY+KDE+++ 
Sbjct: 479 IIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQYIKDEDAMN 538

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
            Y +  +L             ++   L   +       KL       +    + + + + 
Sbjct: 539 QYQVALALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLADRMSRRYPSALVHELIYTP 598

Query: 621 VFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIARGVQE 673
               E   D     +   +L  +LN           E   H  +  +   +     GV  
Sbjct: 599 RLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVEQHEELGLNLPKIIVRTHGVTH 658

Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733
            + L    + S         S  ++        +        ++   S L+ +    R+G
Sbjct: 659 DYALSIDLLNSKEYGKLADLSEALDGLLEEGAYIKRGERTQPVSSFASALEWLIKESRRG 718

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD LF+ LMGD+VEPRR F++
Sbjct: 719 LSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTTLMGDQVEPRRNFME 778


>gi|148555711|ref|YP_001263293.1| DNA gyrase subunit B [Sphingomonas wittichii RW1]
 gi|148500901|gb|ABQ69155.1| DNA gyrase subunit B [Sphingomonas wittichii RW1]
          Length = 826

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/830 (53%), Positives = 588/830 (70%), Gaps = 31/830 (3%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  +N    +SY ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+
Sbjct: 1   MTNETENSPNANSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ----K 112
           L G+ D I +TLN DGS +V DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF+      
Sbjct: 61  LAGHCDRIVITLNPDGSVSVEDNGRGIPTGIHAEEGVSAAEVIMTQLHAGGKFDNTNDAN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +YKVSGGLHGVGVSVVNALS  L L I R+G  + M F  G    PL V G A    GT+
Sbjct: 121 AYKVSGGLHGVGVSVVNALSDVLDLTIWRDGEEHYMRFQRGDAVAPLKVVGPANGKKGTK 180

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTFLPS + F + +F++D L+HR REL+FLNS V++ L D+R  E +EI +FY+GGI AF
Sbjct: 181 VTFLPSPETFKITEFDFDKLEHRYRELAFLNSGVRLFLADERHAERKEIELFYEGGIAAF 240

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR K  LM  P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+  
Sbjct: 241 VKYLDRTKVALMPDPVAIMGQRDDVGIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAF 300

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR + +Y EKS   KK+K S+ GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 301 RAALTRTLNNYAEKSGALKKEKVSLTGDDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEV 360

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R  +ES + D L+ WLEE+P  A+ I++KV+DA+  R+AAR+AR+LTRRKGV+DIASLPG
Sbjct: 361 RQPLESLMADKLAEWLEENPAHARSIIQKVIDAAAAREAARKARELTRRKGVMDIASLPG 420

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP K ELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVERARFD+MLSS+
Sbjct: 421 KLADCQERDPSKCELFLVEGDSAGGSAKQGRDRVYQAILPLKGKILNVERARFDRMLSSK 480

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E+GTLI A+GTGIG+D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF+R M  +I NG
Sbjct: 481 EVGTLIQAMGTGIGRDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMKPIIENG 540

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            LYI +PPLY + +G+S  Y+KD+ +L++YL+   L   +          S +DLR  ++
Sbjct: 541 HLYIAQPPLYKVAKGRSEVYLKDDAALDEYLVTGGLGAMMLETPSGAR--SGDDLRVLVE 598

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
            A ++  L++     +D   +E   ++G  + ES  E + + A  +A  +  I    E +
Sbjct: 599 HARRMRSLMRFVPKRYDPVIVEALALTGALDPESGDEGHRASARAVAAWMGRI--DPEAA 656

Query: 653 WHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI--- 708
           W G +  +    ++R+ RGV +  +++ + + S  ++     +    E+Y     L+   
Sbjct: 657 WSGDLAEDGGYHLQRLWRGVTDHHLIDPAFLRSAEARKLHALAAEQAESYARSARLVPLR 716

Query: 709 -----CNGDK---------IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETT 754
                   D+           +  P +LLD + + GRKG+S+QRYKGLGEMNA QLWETT
Sbjct: 717 SAAAPTGDDEDEPIVDTRGTAVHQPSNLLDAVLAAGRKGMSIQRYKGLGEMNAEQLWETT 776

Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L+P  R++L+V++  A  AD++F+RLMGD VEPRREFIQEN+L    LD+
Sbjct: 777 LDPANRAMLKVEVAQADVADEIFTRLMGDVVEPRREFIQENALSVANLDV 826


>gi|299133396|ref|ZP_07026591.1| DNA gyrase, B subunit [Afipia sp. 1NLS2]
 gi|298593533|gb|EFI53733.1| DNA gyrase, B subunit [Afipia sp. 1NLS2]
          Length = 809

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/805 (60%), Positives = 604/805 (75%), Gaps = 6/805 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S +   + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DN IDE L G+A
Sbjct: 8   STSEPAAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEVLAGHA 67

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + VTLN D S TV D+GRGIPTD+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 68  TRVEVTLNPDNSVTVYDDGRGIPTDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 127

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L LRI R    + + F +G    PLVV G A    GTEVTFL S++ 
Sbjct: 128 GVGVSVVNALSSKLALRIWRNDKEHYIEFKHGDAVAPLVVVGDANGKRGTEVTFLASTET 187

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  D+++DTL+HRLREL+FLNS V I L DKR    R   + Y+GG+EAFV +LDR+KK
Sbjct: 188 FTHTDYDFDTLEHRLRELAFLNSGVHILLSDKRHAVERREELHYEGGVEAFVKFLDRNKK 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            ++ +PI ++  ++ IS+++AM WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQIT
Sbjct: 248 AVVDTPIVMRAEQNGISVEVAMWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQIT 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y E    +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N
Sbjct: 308 GYAE--GMAKKEKISLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLN 365

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             LSAWLEEHP EAK IV KV++A+  R+AAR+ARDLTRRKG LDIASLPGKLADC ERD
Sbjct: 366 ASLSAWLEEHPTEAKTIVGKVIEAAAAREAARKARDLTRRKGALDIASLPGKLADCQERD 425

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITAL
Sbjct: 426 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITAL 485

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMPSLI  G LYI +PPL
Sbjct: 486 GTGIGRDDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPSLIEGGHLYIAQPPL 545

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +TRGKS QY+KDE +LEDYLI   L + I      +      DL+  ++DA  I  L+
Sbjct: 546 YKVTRGKSEQYLKDERALEDYLIETGLDDCILKLATGEE-RKGRDLQTLVEDARTIRGLL 604

Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
            + +  +++  +EQA I+GV N     D +   + A  +A RL+ +A++ E+ W G+   
Sbjct: 605 ANIHSRYNRAVVEQAAIAGVLNPRVTADPQTANAAADYIAKRLDALADEVERGWSGTFTE 664

Query: 660 S-DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                 +R+ RGV+E  VL+ + + S  ++     +  ++E Y     L     +  I G
Sbjct: 665 GQGFTFERMVRGVKEVAVLDDALLSSAEARRIDDLAASLQEAYPRSAMLRRKDSETAIHG 724

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P SL + +   GRKG++ QRYKGLGEMN +QLWETTL+ + RSLL+VKI +   ADD+F+
Sbjct: 725 PVSLFEAVTDAGRKGVTYQRYKGLGEMNPNQLWETTLDTNARSLLQVKIREVDAADDIFT 784

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
           +LMGD VEPRREFIQ+NSL + +D+
Sbjct: 785 KLMGDIVEPRREFIQDNSLDANVDV 809


>gi|88705397|ref|ZP_01103108.1| DNA gyrase subunit B [Congregibacter litoralis KT71]
 gi|88700487|gb|EAQ97595.1| DNA gyrase subunit B [Congregibacter litoralis KT71]
          Length = 804

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/810 (49%), Positives = 544/810 (67%), Gaps = 13/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD   + +YD   I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSD--ASENYDGSKIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +T++ D S +V D+GRGIPT++H +EG+SAAEVI+T LHAGGKF+  +YKVSGGL
Sbjct: 59  CAKILITIHPDESVSVQDDGRGIPTEMH-DEGVSAAEVILTVLHAGGKFDDNTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I R G  +E  + +G+    L   G A N TGT + F PS++
Sbjct: 118 HGVGVSVVNALSEELWLTIWRGGRRFEQRYAHGVPQGALQDVGEA-NQTGTLIRFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F +D L  RLREL+FLNS ++I L D+RS +      FY+GG+ AFV YL+R+K
Sbjct: 177 TFTNIEFEFDVLAKRLRELAFLNSGIEILLNDERSGKE--DRYFYEGGLNAFVDYLNRNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ ++        D +S+++A++WND Y EN+ C+TNNIPQ+DGGTHL+G RSALTR +
Sbjct: 235 TPMHKAFHFQSEGDDGMSVEVALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRSALTRTL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VE  +
Sbjct: 295 NGYIEREGLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+  S +L E P EAK IV K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 NNRFSEYLLESPGEAKAIVTKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D   SE++LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSS E+GTL+TA
Sbjct: 415 DASLSEIYLVEGDSAGGSAKQGRNRRFQAILPLKGKILNVEKARFDKMLSSVEVGTLVTA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ FD +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM  LI  G ++I +PP
Sbjct: 475 LGCGIGKEEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIDRGHVFIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+ +L ++L + +L             IS   L + I     ++ +
Sbjct: 535 LYKVGKGKQHQYLKDDAALAEFLTSSALEGAALYVNADAPPISGESLADLIRQYHSVEAI 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEK----SEKSWH 654
           +K    ++ +  + + V           D+         ++ RL  +  K    S +   
Sbjct: 595 VKRRSRHYPEELVWELVFGPHLAEADLTDKAAVEQYCQAMSERLLTLKTKGTSYSVEPKT 654

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
               N   LV+ IA GV+    L+     S          + +E+               
Sbjct: 655 DDEENWYPLVRMIAHGVERPIQLKPEFFRSKDYAAMVALGDTLEDLIDETGYFQRGEKTH 714

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +     + L+ + +  R+G  +QRYKGLGEMN  QLWETT++P++R +L+V + DA +AD
Sbjct: 715 QTQNFVTGLEWLMAEARRGYYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTVDDAMRAD 774

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ++F+ LMGD+VEPRREFI+EN+L    LD+
Sbjct: 775 EIFTTLMGDQVEPRREFIEENALYVSNLDV 804


>gi|83642921|ref|YP_431356.1| DNA gyrase subunit B [Hahella chejuensis KCTC 2396]
 gi|83630964|gb|ABC26931.1| DNA gyrase, B subunit [Hahella chejuensis KCTC 2396]
          Length = 805

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/797 (48%), Positives = 535/797 (67%), Gaps = 11/797 (1%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSC 74
           I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   + +T++ D S 
Sbjct: 12  IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKEVKITIHADESI 71

Query: 75  TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW 134
           TVSD+GRGIP D+H+E G+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  
Sbjct: 72  TVSDDGRGIPVDIHEEMGVSAAEVIMTMLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKE 131

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L+L I+R+  ++E  + +G+   PL V G   + +GTEV F PS++ F+  +F+YD L  
Sbjct: 132 LRLTIRRDNKVHEQVYKHGVPQAPLSVVGET-DRSGTEVHFFPSAETFNNIEFHYDILAK 190

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLREL+FLNS V+I+L D+RS +    T  Y+GG+ AFV YL++ K P+ +    ++   
Sbjct: 191 RLRELAFLNSGVKITLHDERSAKT--ETFEYEGGLRAFVEYLNQTKNPINKVFHFLKERE 248

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D  +++++++WND + EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY+EK    KK K
Sbjct: 249 DGTAVEVSLQWNDSFQENIFCFTNNIPQRDGGTHLAGFRAALTRSLNSYIEKESMLKKTK 308

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   + +L E+P +
Sbjct: 309 VATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNAYFADFLAENPQD 368

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 369 AKNVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 428

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           AGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG++ FD+NK
Sbjct: 429 AGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFDVNK 488

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH IIIMTDADVDG+HIRTLLLTFFFRQM  +I NG ++I  PPLY + RGK  QYVK
Sbjct: 489 LRYHSIIIMTDADVDGSHIRTLLLTFFFRQMREIIENGHVFIAMPPLYKVKRGKQEQYVK 548

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           DE++L+ YL   +L             I    L   + D      +I+     + +  + 
Sbjct: 549 DEKALQQYLTQSALENTQLFVNPDAPPIIGTALETLVTDYRTATGVIERMSRAYPRGVLN 608

Query: 615 QAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSINNSD-----ILVKRI 667
           Q +       E  ++     +  + L  +L +            + +++       V+ +
Sbjct: 609 QLLYVPRLTQEQLKDKSAVETWVALLNEKLGYDNSTGNNYVISVVEDAERSLFLPQVELV 668

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             GV  ++        S         + +++        +        I      L  + 
Sbjct: 669 QHGVDYKYTFNQDFFGSSSYTNIADMAEKLDGLVEAGAYVKRGEKTQAIETFDDSLVWLM 728

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
              ++G+++QRYKGLGEMN  QLWETT++P  R +++V I DA  AD +F+ LMGD+VEP
Sbjct: 729 KEAQRGLNIQRYKGLGEMNPEQLWETTMDPAVRRMMKVTIEDAIAADQIFNTLMGDDVEP 788

Query: 788 RREFIQENSLPS-ALDI 803
           RR+FIQ N+L    LD+
Sbjct: 789 RRDFIQTNALSVMNLDV 805


>gi|90415375|ref|ZP_01223309.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2207]
 gi|90332698|gb|EAS47868.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2207]
          Length = 804

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/811 (48%), Positives = 538/811 (66%), Gaps = 15/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D     +YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MTD---EQNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + ++ D S TVSDNGRGIPT++H +EG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CSEIKIVIHQDESITVSDNGRGIPTEMH-DEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R G ++E  + +G    PL + G   + +GTEV F+PS+D
Sbjct: 117 HGVGVSVVNALSVALRLTIRRNGKVHEQHYSHGEPQGPLTIVGDT-DVSGTEVHFVPSAD 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F++D L  RLRELSFLNS V+I L D+R+ +       Y+GG+ AFV +L+ +K
Sbjct: 176 TFSNIKFHFDVLAKRLRELSFLNSGVRIVLADERNGKE--EVYAYEGGLRAFVEFLNTNK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + +         D  S+++A++WNDG+ EN+ C+TNNIPQ+DGGTHL+G RSALTR +
Sbjct: 234 TTVNKVMHFSTQRDDGTSVEVALQWNDGFQENIHCYTNNIPQRDGGTHLAGFRSALTRGL 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+EK   + K K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 294 NTYIEKEGINGKAKVATTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +  + +L E P +A+ +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 354 GEKFTEFLLEFPQDARAVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 414 DPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + F++ KLRYH ++IMTDADVDG+HIRTLLLTFFFRQM  L+  G ++I +PP
Sbjct: 474 LGCGIGAEEFNVTKLRYHTVVIMTDADVDGSHIRTLLLTFFFRQMRELVEQGHIFIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGKS +YVKD+++L +YL  ++L         +   I    L   +     +  L
Sbjct: 534 LYKVNRGKSEKYVKDDDALLEYLTAKALENAALYVNATAPGIKGTALEELVGKYRHVLGL 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEK-----SW 653
           +      + K  +E  V +   + E  +         + L  +L      + +       
Sbjct: 594 VDRMSLVYPKEILEALVYTKKISAELLENAGDLAVWCADLQEKLENSDSGTHRYKVLVDE 653

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N    +V+  A G+    +L      +   +      + ++        +      
Sbjct: 654 DKEHNIFQPMVEITAHGIPNYHLLSRELFAANEYRAISGLGDVLQGLIEEGAYVQRGERN 713

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            ++      LD + +  R+GIS QRYKGLGEMN  QLW+TT++PD R +LRV I DA  A
Sbjct: 714 AQVESFTEALDWLMAESRRGISTQRYKGLGEMNPGQLWDTTMDPDVRRMLRVTIEDAIAA 773

Query: 774 DDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           D +F+ LMGD+VEPRR+FI+ N+L    LD+
Sbjct: 774 DQMFTTLMGDQVEPRRDFIETNALSVVNLDV 804


>gi|70733517|ref|YP_257156.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf-5]
 gi|68347816|gb|AAY95422.1| DNA gyrase, B subunit [Pseudomonas fluorescens Pf-5]
          Length = 805

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 14/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSE---ENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+    + + G +   TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQERMKIVGDSE-TTGTQIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDVLAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD++++EDY+   +L +      +    IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDDAMEDYMTQSALEDASLHLNEEAPGISGEALERLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  +       E   D        +K   RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFIYLPAVTMEQLSDHAAMQDWLAKYDARLRTSEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       ++         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVSLGAQLSTLLDEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +T     LD + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  A
Sbjct: 715 KAVTEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSMRRMLKVTIEDAIGA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           D +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|187938361|gb|ACD38218.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 778

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/778 (48%), Positives = 522/778 (67%), Gaps = 10/778 (1%)

Query: 22  DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81
           DAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I VT++ D S +V+D+GR
Sbjct: 1   DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVTDDGR 60

Query: 82  GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141
           GIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R
Sbjct: 61  GIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHR 120

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
            G+I+  ++ +G    PL V G   + TGT++ F PS++  +  +F+YD L  RLRELSF
Sbjct: 121 GGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETSTNIEFHYDILAKRLRELSF 179

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISID 260
           LNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++        R++ I+++
Sbjct: 180 LNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVE 238

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   SKK K +  GD
Sbjct: 239 VAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGD 298

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  
Sbjct: 299 DAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLSEFLIENPTEAKMVCS 358

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR++TRRKG LD+A LPGK ADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 359 KIIDAARAREAARKAREMTRRKGALDLAGLPGKFADCQEKDPALSELYIVEGDSAGGSAK 418

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           QGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 419 QGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 478

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           IIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + +GK  QY+KDE+++ 
Sbjct: 479 IIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQYIKDEDAMN 538

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
            Y +  +L             ++   L   +       KL       +    + + + + 
Sbjct: 539 QYQVALALDNASLHVNAEAPALAGEALEKLVQQYNAGTKLADRMSRRYPSALVHELIYTP 598

Query: 621 VFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIARGVQE 673
               E   D     +   +L  +LN           E   H  +  +   +     GV  
Sbjct: 599 RLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVEQHEELGLNLPKIIVRTHGVTH 658

Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733
            + L    + S         S  ++        +        ++   S L+ +    R+G
Sbjct: 659 DYALSIDLLNSKEYGKLADLSEALDGLLEEGAYIKRGERTQPVSSFASALEWLIKESRRG 718

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +S+QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD LF+ LMGD+VEPRR F
Sbjct: 719 LSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTTLMGDQVEPRRNF 776


>gi|154245817|ref|YP_001416775.1| DNA gyrase, B subunit [Xanthobacter autotrophicus Py2]
 gi|154159902|gb|ABS67118.1| DNA gyrase, B subunit [Xanthobacter autotrophicus Py2]
          Length = 813

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/814 (56%), Positives = 594/814 (72%), Gaps = 12/814 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ +  +    Y A SIQ+LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L
Sbjct: 1   MAEPVPAASPDDYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  +TVTLN DGS TV+D+GRGIPTD+HKEEG+SAAEVIMT+LHAGGKFNQ SYKVS
Sbjct: 61  AGWAKEVTVTLNADGSVTVTDDGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFNQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFL 176
           GGLHGVGVSVVNALS+ L L I R+G  + M F +G  + PL V G A  +  GT VTF 
Sbjct: 121 GGLHGVGVSVVNALSTTLDLTIWRDGKEHFMRFRHGDAEAPLKVVGDAPGDKRGTRVTFT 180

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + F+  DF+Y TL+HRLREL+FLNS V I L D R+ + +   + Y+GG+EAFV YL
Sbjct: 181 PSPETFTKIDFDYATLEHRLRELAFLNSGVLIILTDARTADVKREELHYEGGVEAFVKYL 240

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR K  L+Q P+ I+  +D ++++ A+ WNDGYHEN+LCFTNNIPQ+D GTH +G  +AL
Sbjct: 241 DRSKSALLQKPVVIRAEKDGMTVEAALSWNDGYHENILCFTNNIPQRDRGTHFTGFAAAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TRQ+  Y   S  +KK+K    G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRQVIGYANTSGIAKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES V++ LS W EE+P EAK ++ KV++A+  R+AAR+ARDLTRRK  LD+ASLPGKLAD
Sbjct: 361 ESLVSEALSVWFEENPAEAKNVIGKVVEAAAAREAARKARDLTRRKSPLDVASLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP KSE+F+VEGDSAGGSAKQGR R  QA+LPLRGKILNVERARFDKMLSS++IGT
Sbjct: 421 CQERDPAKSEIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDKMLSSEQIGT 480

Query: 477 LITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           LITALGTGIG+D      FD+ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP L+  
Sbjct: 481 LITALGTGIGRDDGHSGGFDLAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELVDA 540

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G L+I +PPLY +TRGKS  Y+KDE++LEDYLI   L E          V + +DL + +
Sbjct: 541 GHLFIAQPPLYKVTRGKSETYLKDEKALEDYLITAGLDEASLHLAT-GEVRAGSDLAHVV 599

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN--RLNFIAEKS 649
           + + ++   +   +P +++   EQA ++G F   + Q+    +A+      RL+ +A+++
Sbjct: 600 EVSRQMRAALGAMHPRYNRAVAEQAALAGAFGARTLQDEAAGIAAAAEVALRLDALADET 659

Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           E+ W G  +++     R  RGV E   ++ + + S  ++     +  +E  +     L  
Sbjct: 660 ERGWTGLFDDAGYTFSRTVRGVAEVARIDHAFVASPEARRLDNLARDLEGVFTAACVLKR 719

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             D+  + G   L D +   GRKG+S+QRYKGLGEMN  QLWETTL+ + RSLL+V++ +
Sbjct: 720 KNDEQVLFGAVDLFDAVTDTGRKGLSLQRYKGLGEMNPEQLWETTLDVNARSLLQVRVKE 779

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
              ADDLF+RLMGD VEPRREFIQEN+L +++D+
Sbjct: 780 VDAADDLFNRLMGDTVEPRREFIQENALRASVDV 813


>gi|255320699|ref|ZP_05361876.1| DNA gyrase, B subunit [Acinetobacter radioresistens SK82]
 gi|255302315|gb|EET81555.1| DNA gyrase, B subunit [Acinetobacter radioresistens SK82]
          Length = 822

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/814 (49%), Positives = 545/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +++ Q  +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ 
Sbjct: 11  TEHTQEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEILVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L+L ++R G I+E  + +G+   PL V G     TGT+V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQTE-RTGTKVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVRIVLCDERI--NLEHVFDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTTQAENGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 SYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELFLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+SS E+GTLITAL
Sbjct: 428 PALSELFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMISSAEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKI+IMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ +           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDDLSLHVSVDAPAINGQALAQVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLN--------FIAEKSEK 651
                 +  T ++  +    F  +   D+        +L +R+          ++ +  +
Sbjct: 608 HRLTLRYPATLLDGLLALEAFKMDQNHDESYVQQWGEQLRSRIADMQSSLRPELSLEKFE 667

Query: 652 SWHGSINNSDI---LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
                  +S +    +      +   ++L+   + S         S            L 
Sbjct: 668 RIDADGQSSALYWPRITVYVHNLPHHYLLDAGLLGSAEYARLLKNSRSWFSLIEEGAYLE 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +++++    +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGERRVQVSNFHQVWQFILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|332188898|ref|ZP_08390603.1| DNA gyrase, B subunit [Sphingomonas sp. S17]
 gi|332011080|gb|EGI53180.1| DNA gyrase, B subunit [Sphingomonas sp. S17]
          Length = 830

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/834 (53%), Positives = 583/834 (69%), Gaps = 35/834 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D  Q + Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+L G+
Sbjct: 1   MADTPQTNEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKV 116
            D I + LN DGS +V+DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF    +  +YKV
Sbjct: 61  CDRIDIQLNADGSVSVTDNGRGIPTGIHPEEGVSAAEVIMTQLHAGGKFENTSDDNAYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTF 175
           SGGLHGVGVSVVNALS +L L I R+G  + M F +G    PL V G A     GT VTF
Sbjct: 121 SGGLHGVGVSVVNALSEFLDLTIWRDGEEHYMRFAHGDAVAPLKVVGKAAPGQKGTRVTF 180

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS   F + +F++D L+HR REL+FLNS V++ L D R  EP+ + ++Y+GGI AFV +
Sbjct: 181 LPSPATFKITEFDFDKLEHRYRELAFLNSGVRLFLTDARHEEPKTVELYYEGGIAAFVKW 240

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR K PL   PI I G RD I +D+A+ WND Y+ENVL FTNNIPQ+DGGTH++  R+A
Sbjct: 241 LDRSKSPLFPEPIAIHGQRDAIGMDVALEWNDSYYENVLAFTNNIPQRDGGTHIAAFRAA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y +KS   KK+K ++ GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR  
Sbjct: 301 LTRTLNNYADKSGLLKKEKVTLTGDDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQP 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +ES + D L+ WLEE+P  A+ IV K++DA+  R+AA+RAR+LTRRKGV+DIASLPGKLA
Sbjct: 361 LESLIADKLADWLEENPQNARAIVGKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSELFLVEGDSAGGSAKQGR+R  QAILPLRGKILN ERARFD+M+SS+EIG
Sbjct: 421 DCQERDPAKSELFLVEGDSAGGSAKQGRNRHFQAILPLRGKILNTERARFDRMISSKEIG 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLI A+GTGIG+D F+ +KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI  G LY
Sbjct: 481 TLIQAMGTGIGRDDFNADKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIERGHLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY  T+G+S  Y+KD+ +L++YL+   +S  +       G  S NDL+  +D A 
Sbjct: 541 IAQPPLYKATKGRSEVYLKDDTALDEYLVEAGVSTMVLE--GPGGARSGNDLKALVDHAR 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           ++  L++     +D + IE   ++G  +    +E  ++   +   RL   +   E  W  
Sbjct: 599 RMRILMRYVPRRYDASIIEVLALAGALDPVLTREQRMATVVETTRRLE--SGDHEARWSA 656

Query: 656 SI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI------ 708
            +  +  +  +R+ RGV +  ++E S I S  ++     +    E++     L+      
Sbjct: 657 RLTEDGGVHFERLWRGVTDHHIVEASFIASAEARKLHTLAAEQAESFAQAGKLVPLRSAA 716

Query: 709 ---------CNGD---------KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
                     + +         + ++  P  LL+ I + GRKG+++QRYKGLGEMNA QL
Sbjct: 717 TEPSADVVPTDEEGHSTTLARGETRVARPSQLLEAILTSGRKGLAIQRYKGLGEMNAEQL 776

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           WETTL+P  RS+LRV   D + AD++FSRLMG+ VEPRREFIQ+N+L    LD+
Sbjct: 777 WETTLDPAVRSMLRVTSDDVAAADEVFSRLMGEVVEPRREFIQDNALNVANLDV 830


>gi|260553769|ref|ZP_05826039.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
 gi|260405073|gb|EEW98573.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
          Length = 822

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/814 (50%), Positives = 539/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLHLIINRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTIVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISAEAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648
           +     +  + ++  +    F  + + +       A +           L   +     +
Sbjct: 608 QRLTLRYPASLLDGLLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    V      +   ++L+   + S         S            L 
Sbjct: 668 RENAQGEKTAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFNLIEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|90408445|ref|ZP_01216605.1| DNA gyrase subunit B [Psychromonas sp. CNPT3]
 gi|90310429|gb|EAS38554.1| DNA gyrase subunit B [Psychromonas sp. CNPT3]
          Length = 809

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/811 (50%), Positives = 545/811 (67%), Gaps = 14/811 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++E+LDN+IDE+L G+ + I
Sbjct: 1   MAENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEILDNSIDEALAGHCNDI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
             T++ DGS +V D+GRGIP  +HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  VTTIHTDGSVSVRDDGRGIPVGIHKEEGVSAAEVIMTILHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS  L L IKR+G++++ ++I+G  + PL V G   ++TGTE+ F PS + F+ 
Sbjct: 121 ISVVNALSKKLLLTIKRDGHVHQQTYIHGDPEAPLKVIGDT-DETGTEIRFWPSEETFAD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F Y+ L  RLRELSFLNS V I LID+R  E +     Y+GGIEAFV YL++ K P+ 
Sbjct: 180 VLFYYNILAKRLRELSFLNSGVSIKLIDER-EEDKSDLFCYEGGIEAFVKYLNKSKTPIH 238

Query: 245 QSPIRIQGSR-DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q          D   +++AM+WNDG+ EN+ CFTNNIPQ+DGG+HL+G RS LTR + SY
Sbjct: 239 QKIFHFNVENADGTCVEVAMQWNDGFQENIYCFTNNIPQRDGGSHLTGFRSGLTRTLNSY 298

Query: 304 VEKSF---GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           +EK      + K+K S  G D REG T+V+S+K+PDP+FSSQTK++LVSSEVR VVES +
Sbjct: 299 MEKEIAKVKNSKNKASTEGGDSREGLTAVISVKVPDPKFSSQTKDRLVSSEVRPVVESAM 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P EA+II  K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC E+
Sbjct: 359 GEKLQEFLLENPSEARIITSKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQEK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 419 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  GF+YI +PP
Sbjct: 479 LGCGIGRDEYNPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGFIYIAQPP 538

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   YVKDE  L+ YL   ++             I+   L   I     +   
Sbjct: 539 LYKVKKGKQETYVKDESELQAYLTTLAMEGSSLHVNQEAPGINGVALEGLIARYRSVQDN 598

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEK-----SEKSW 653
           IK     +    +++ +    F  E   ++ +    A+K++  LN    +     +  + 
Sbjct: 599 IKRLKRRYPMALLDKLIYQNAFKVEDLGNEALAQEWATKVSTSLNSEDLEGTIFTNSVTI 658

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
             + ++  I       G+   F+ +     S G K        I         +     +
Sbjct: 659 AENPDDHKITFTIRKHGIDTDFIFDHRYFASEGYKAIVNIGKEITGLIEEGAYIQRGDRR 718

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             IT     +  +    ++G+ +QRYKGLGEMN  QL +TT++P+TR +L+V+I DA  A
Sbjct: 719 KDITSFVEAVQWLMHESKRGLYIQRYKGLGEMNPDQLCDTTMDPNTRHMLQVRIEDAVAA 778

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D LFS LMGD VEPRR FI+EN+L    LDI
Sbjct: 779 DQLFSTLMGDHVEPRRAFIEENALRVENLDI 809


>gi|163797313|ref|ZP_02191266.1| Type IIA topoisomerase [alpha proteobacterium BAL199]
 gi|159177404|gb|EDP61960.1| Type IIA topoisomerase [alpha proteobacterium BAL199]
          Length = 815

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/818 (56%), Positives = 592/818 (72%), Gaps = 18/818 (2%)

Query: 1   MSDNI-------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           M+D          ++ YDADSI++L+GLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAI
Sbjct: 1   MADETLPENGNGGSNGYDADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE+L GY D + VTLN DGS TVSDNGRGIP D+H EEG+SAA+VIMT+LHAGGKF+Q S
Sbjct: 61  DEALAGYCDAVMVTLNGDGSVTVSDNGRGIPVDMHSEEGMSAAQVIMTQLHAGGKFDQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L LRI R+G  + M F +G+ +  LVV G A   TGTEV
Sbjct: 121 YKVSGGLHGVGVSVVNALSEILDLRIWRDGKEHFMRFRHGVPEADLVVVGPAP-QTGTEV 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           TF PS   F++ DF+  TL+HRLREL+FLNS V+I L D R+ E + + + Y+GG++AFV
Sbjct: 180 TFKPSKATFTMVDFDLPTLEHRLRELAFLNSGVRILLTDDRTAESKTVDLHYEGGLQAFV 239

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +YLDR + PL  + + + G RD +++++AM W D YHE +LCFTNNIPQKDGG HL+G R
Sbjct: 240 TYLDRARHPLHPTLM-MSGERDGMTVEVAMEWTDSYHETMLCFTNNIPQKDGGAHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTRQ+ SY + S  +KK+K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 299 AALTRQVNSYAQSSGIAKKEKVTLSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVK 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            VVE+ V D L  W EEHP +AK +V K  +A+  R+AARRARDLTRRKGVLDIA+LPGK
Sbjct: 359 PVVENIVADKLQQWFEEHPADAKRVVAKAYEAAAAREAARRARDLTRRKGVLDIANLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC ERDP K+ELFLVEGDSAGGSAKQGR R++QAILPLRGKILNVERARFDKML+SQE
Sbjct: 419 LADCQERDPAKAELFLVEGDSAGGSAKQGRHRKSQAILPLRGKILNVERARFDKMLASQE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IGTLI ALGT IG + FDI KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP L+  G+
Sbjct: 479 IGTLIAALGTSIGPEEFDITKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELLERGY 538

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LYI +PPLY + RG    Y+KD+ +LE +LI++     +         I+  DL    + 
Sbjct: 539 LYIAQPPLYRVKRGNEETYLKDDRALERFLIDEGTKGAVLTLST-GTQIAGVDLAAQAEL 597

Query: 594 ALKIDKLIKDFYPN-HDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAEKSE 650
           A +  +LI+           +EQA ++G       SD E   + A  LA RL+ ++E+ E
Sbjct: 598 ARQAKQLIEPLARRLGSSVVVEQAAVAGALGTGLLSDPETAQATAEYLARRLDALSEEHE 657

Query: 651 KSWHGSINNSD----ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
           + W G    ++    ++  R  RGV E++ L+G+ + +  ++     ++ +++ +    S
Sbjct: 658 RGWSGLFEETETGPALVFARTLRGVTERYRLDGAFLKTPEARSLDERASDLQDLFAKRAS 717

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
           +        + GP  L++ +F+IGRKG+++ RYKGLGEMN  QLWETTL+PD R+LL+VK
Sbjct: 718 MENKDGPRVVHGPIGLIEAVFAIGRKGLTVNRYKGLGEMNPGQLWETTLDPDRRTLLQVK 777

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +  A +A ++FS LMGD VEPRREFIQ N+L    LD+
Sbjct: 778 VAHADEAQEVFSTLMGDVVEPRREFIQTNALKVANLDV 815


>gi|257455167|ref|ZP_05620405.1| DNA gyrase, B subunit [Enhydrobacter aerosaccus SK60]
 gi|257447500|gb|EEV22505.1| DNA gyrase, B subunit [Enhydrobacter aerosaccus SK60]
          Length = 830

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/815 (49%), Positives = 543/815 (66%), Gaps = 16/815 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S + +N +Y +DSI++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 19  SSHQENKAYGSDSIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 78

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I + ++ D S +V DNGRGIP D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLH
Sbjct: 79  DQIDIIIHEDESVSVKDNGRGIPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLH 138

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L I R+G  Y  ++ +G   +P+     A   TGT+V F PS DI
Sbjct: 139 GVGVSVVNALSKKLVLDIWRDGYHYSQTYADGEPVSPIEQL-EATQQTGTQVRFYPSDDI 197

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+   F+++ L  RLRELSFLNS V+I L D+R  +  E    + GG+  FV Y++  K 
Sbjct: 198 FTGTIFDFEILAKRLRELSFLNSGVRIVLTDERDDKRHE--FEHVGGLSEFVHYINAGKT 255

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +         D IS+++A++W D Y+E VLCFTNNIPQKDGGTHLSG RSALTR + 
Sbjct: 256 GLNEVFHFTSEENDGISVEVALQWTDSYNEKVLCFTNNIPQKDGGTHLSGFRSALTRCLN 315

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY++     KK+K +V GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+  VES ++
Sbjct: 316 SYMDSENLMKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKPAVESAMH 375

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  SA+L E+P  AK I  K++DA+  R+AAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 376 DKFSAYLLENPNAAKGIAGKIIDAARAREAARKAREMTRRKTTLDIAGLPGKLADCQEKD 435

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSSQE+GTLITAL
Sbjct: 436 PAMSELYIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSSQEVGTLITAL 495

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG D ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQ P L+  G +YI +PPL
Sbjct: 496 GTGIGPDEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELLERGHIYIAQPPL 555

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +G+   YVKD+E+L+ YL++ ++ +      +    ++   L + ++D  +   + 
Sbjct: 556 YKVKKGRQELYVKDDEALKAYLLSSTIDDTQLHLSEGTPAVTGQALESLLNDYNQTQTIK 615

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE--------KSEK 651
                 +    ++   I+   +    ++     +    LA  L   A+        +S  
Sbjct: 616 NRLQIKYPSAVLDALAITSKLSIPMIEDEAQMQNWVEALAQNLAVTADGLDPQIELESFS 675

Query: 652 SWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
              G          V      +   ++L+ + I S         +++ ++       +  
Sbjct: 676 KQEGDHQKTYYLPRVTIFIHQLPHAYLLDTAFIGSGEYSRLHRLTSQWKDMLSDTAYIAK 735

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
              K+ I     L   I S  R+G+++QRYKGLGEMNA QLWETT++P+ R +L+V I D
Sbjct: 736 GDKKLPIKDMGYLWQFIMSDARRGLAIQRYKGLGEMNADQLWETTMDPENRHMLKVTIED 795

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A  AD LFS LMGD+VEPRR FI+EN+L    LDI
Sbjct: 796 AIAADHLFSCLMGDDVEPRRAFIEENALTVTNLDI 830


>gi|255020212|ref|ZP_05292281.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756]
 gi|254970354|gb|EET27847.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756]
          Length = 801

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/808 (50%), Positives = 546/808 (67%), Gaps = 12/808 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YD+ SIQ+L+GL+AV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 1   MTEK-----YDSTSIQVLRGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +V DNGRGIP D+H EEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 56  CDRILVTIHEDESVSVRDNGRGIPVDIHAEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L L+I R+G  +   + +G    PL   G A    GTE+ F PS+ 
Sbjct: 116 HGVGVSVVNALSEYLHLQIDRDGYRWTQEYRDGEPLAPLQR-GEASRKRGTEIRFKPSAQ 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+   F+++ L  RLREL+FLNS V I L D+R  E RE    Y+GGI AFV +L+R K
Sbjct: 175 VFADTHFHFEILARRLRELAFLNSGVHIQLRDER-GEGREEVFHYEGGIRAFVEHLNRSK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +  + I + G+RD + ++ A++WN+GY+E+VLCFTNNIPQ DGGTHL+G R+ALTR +
Sbjct: 234 NAIHPTVISLSGARDGVMVEAALQWNEGYNESVLCFTNNIPQADGGTHLAGFRAALTRTL 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+E+     K K +V GDD REG T+VLS+K+PDP+FSSQTKEKLVSSEV+ +VE+ +
Sbjct: 294 NQYMEREGILAKAKVAVSGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVEASM 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L+EHP EA+ I  KV++A+  R+AARRAR+LTRRKG LDIA+LPGKLADC E+
Sbjct: 354 AEALGIFLDEHPREAQAIAAKVVEAARAREAARRARELTRRKGALDIANLPGKLADCQEK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP K E++LVEGDSAGGSAKQGR R +QAILPL+GKILNVERARFDKMLSS EIGTLITA
Sbjct: 414 DPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDKMLSSDEIGTLITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIGQ+ FD+ KLRYH++IIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI +PP
Sbjct: 474 LGTGIGQEDFDVTKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPELVARGHVYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  +Y+KD++ L  YL   ++ +          ++S   L   I     ++ +
Sbjct: 534 LYKVKKGKDERYIKDDQELATYLRELAVQDARFETAAGGEIVSDEHLAALIRQYQGVEAV 593

Query: 601 IKDFYPNHDKTFIEQAV-ISGVFNCESDQEINVSLASKLANRLNFIA---EKSEKSWHGS 656
           I+     +    +     ++   +           A++L N L   A   E       G 
Sbjct: 594 IERLARRYPTALLWALATVAPPASAMDAGAPWQDFAARLENILQGDALAGEHYRVQIVGG 653

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
             +  + ++R   G QEQ  L+     S   ++ R ++ ++E        +       ++
Sbjct: 654 DESPRLHIERRLHGSQEQRFLDADFFVSADYRHLRNYAEQVESRVGDGARIHRGDKSSEL 713

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 +  + +  R+G+ +QRYKGLGEMN  QLWETT+N D R L+RV + DA  AD++
Sbjct: 714 RHFRQGMQWLLAQARQGVEIQRYKGLGEMNPEQLWETTMNADNRRLVRVDVEDAIAADEV 773

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           FS LMGD VEPRR FI+EN+     LD+
Sbjct: 774 FSMLMGDAVEPRRRFIEENARFVSRLDV 801


>gi|88813027|ref|ZP_01128269.1| DNA gyrase subunit B [Nitrococcus mobilis Nb-231]
 gi|88789660|gb|EAR20785.1| DNA gyrase subunit B [Nitrococcus mobilis Nb-231]
          Length = 805

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/811 (51%), Positives = 545/811 (67%), Gaps = 14/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     S Y +  I+IL+GLDAV+KRP MYIGDTD  +GLHHM++EV DNA+DE+L G+
Sbjct: 1   MS---AQSEYGSAQIKILRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVADNAVDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV+DNGRGIP D+H EEG SAAEVIMT LHAGGKF+ +SYKVSGGL
Sbjct: 58  CTEIEVMIHADNSVTVTDNGRGIPVDIHPEEGRSAAEVIMTMLHAGGKFDNRSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L IK+ G+I+   + +G    PL   G   NDTGT+VTF PSS+
Sbjct: 118 HGVGVSVVNALSERLRLVIKKSGHIHLQEYRDGEPLAPLKQLGET-NDTGTQVTFHPSSN 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  +FNYD L  R RELSFLN  V+ISL D+R+ +       Y GGI AFV +L+++K
Sbjct: 177 IFTNIEFNYDILAKRFRELSFLNPGVRISLKDERTDKE--DVFEYAGGIRAFVQHLNKNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +    +   +  + I++AM+WND Y EN+ CFTNNIPQ+DGGTH++G R+ALTR I
Sbjct: 235 TPLHRDAFYLNFWKGPVGIEIAMQWNDSYQENIFCFTNNIPQRDGGTHMAGFRAALTRTI 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+E    SKK K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+ VVES +
Sbjct: 295 NQYMESEGYSKKAKLVPTGDDVREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKGVVESVL 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ WL EHP  AK IV+KV++A+  RDAARRAR++TRRKGVLD+A LPGKLADC ER
Sbjct: 355 AEHLNEWLYEHPGSAKAIVEKVIEAARARDAARRAREMTRRKGVLDVAGLPGKLADCQER 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITA
Sbjct: 415 DPARSELYLVEGDSAGGSAKQGRDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ FD +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQM  L+  G +YI +PP
Sbjct: 475 LGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMVELVERGHIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK   YVKDE+ L ++L+  +L++           I+  +L   I   L    +
Sbjct: 535 LYKVKRGKQEDYVKDEKELIEHLLCLALTDASLQPNAGVARITGEELEGLIRQYLATMDM 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEK-SEKSWHGSI 657
           I       D   +   V     + ++ ++     S   +L   +N      +E     ++
Sbjct: 595 IDHLARRTDPNILRAMVDLPALDEDALRDGRRIDSWFQRLEEGVNRNQPTGTEYRVRVNL 654

Query: 658 NN----SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +      D LV +   G+   +        S   +  R  S  + +       +      
Sbjct: 655 SQNGSFHDALVTKRMHGILYPYTFSMQFFLSQEYETIRRLSEALADRLGADALVSRGQRS 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             ++    +++ +    ++G+S+QRYKGLGEMN +QLWETT++P  R LL+V+I D   +
Sbjct: 715 KAVSEFHEVVNWLLDEAKRGLSVQRYKGLGEMNPAQLWETTMDPAARRLLQVRIEDVVAS 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DD+F+ LMGD+VEPRREFI+ N+L +  LDI
Sbjct: 775 DDIFTTLMGDQVEPRREFIENNALSASNLDI 805


>gi|300112751|ref|YP_003759326.1| DNA gyrase subunit B [Nitrosococcus watsonii C-113]
 gi|299538688|gb|ADJ27005.1| DNA gyrase, B subunit [Nitrosococcus watsonii C-113]
          Length = 807

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/809 (50%), Positives = 542/809 (66%), Gaps = 13/809 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             +++YD+  I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I
Sbjct: 2   KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCDEI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D S T+SDNGRGIPTD+H+EEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 62  AVIVHSDDSITISDNGRGIPTDIHQEEGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS+ L L I R+G +Y+  +  G+   PLV  G A   +GT + F PS  IFS 
Sbjct: 122 ISVVNALSAALFLEIHRDGKVYQQHYREGVPQEPLVAIG-ATERSGTTIRFSPSPKIFSN 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D    RLREL+FLNS V+I L D+R    R+   FY+GGI AFV +L+++K PL 
Sbjct: 181 IVFSFDIFAKRLRELAFLNSKVRILLEDERIG--RKEEFFYEGGISAFVEHLNKNKTPLH 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +    QG RD ++++LAM+WND Y E+  CFTNNIPQ+DGGTHL+G RSALTR +  Y+
Sbjct: 239 GNVFYFQGERDGVAVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRSALTRTLNQYI 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           EK   +KK K    GDD REG T+VLSIK  DP+FSSQTKEKLVSSEV+ VV+S V++  
Sbjct: 299 EKEGLTKKTKVGTSGDDAREGLTAVLSIKAQDPKFSSQTKEKLVSSEVKPVVDSLVSEHF 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L EHP++AK I  K+++A+  R+AAR+AR+LTRRKG LD+A LPGKLADC ERDP  
Sbjct: 359 QNFLLEHPVDAKAIGGKMIEAARAREAARKARELTRRKGALDMAGLPGKLADCQERDPTL 418

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELFLVEGDSAGGSAKQGR R NQAILPL+GKILNVE+ARFDKMLSS E+ TLITALG G
Sbjct: 419 SELFLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLSSVEVATLITALGCG 478

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ ++ ++LRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI +PPLY +
Sbjct: 479 IGREEYNPDRLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKV 538

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RGK  QY++D+  +E YLIN S         + +  I   +L   + D  ++   I+  
Sbjct: 539 KRGKQEQYIRDDAEMERYLINLSTDNAKIYSENGETYIGGEELSTLLTDYFQLRYAIERL 598

Query: 605 YPNHDKTFIEQAVISGVF----NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHG 655
              +D   + Q +         +   + +     A++L  R N  A+     + E +   
Sbjct: 599 SYRYDPLLLNQMLYLDAVPTPTDPMIEIKQLEEWATQLEARSNNAAKGNARYEIEVTTVP 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             +   + VK I  GV     +      S   +  R     +         +     +  
Sbjct: 659 ENHVPVVQVKVIRHGVTAYQRICMDFFASPDYQRIRDLGKHLVNAIKAESYVQRGDRQQL 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +      ++ +    R+G ++QRYKGLGEMN  QLWETT+NP TR L +V+I D   AD+
Sbjct: 719 VNDIQEAINWLMGEARRGQAVQRYKGLGEMNPDQLWETTMNPATRRLSQVRIDDVIAADE 778

Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           +F+ LMGD VEPRR+FI+ N+L  A LDI
Sbjct: 779 IFTTLMGDHVEPRRDFIESNALNVAHLDI 807


>gi|325123497|gb|ADY83020.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 822

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/814 (49%), Positives = 538/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G ++E  + +G    PL V G   + +GT V F PS   
Sbjct: 131 GVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSGTTVRFWPSELT 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKT 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I +++A++WN+ Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADTENGIGVEVALQWNESYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELSLHTNAEAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648
           +     +  + ++  +    F  + + +       A +           L   ++  A +
Sbjct: 608 QRLTLRYPASLLDALLEVEAFKSDQNHDEAYVQQWADQVRDIITRLQPSLRPEISLEAFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    +      +   ++L+ + + S         S            L 
Sbjct: 668 RENAQGEKSAHYWPRITVYVHNLPHAYLLDAALLNSAEYARLLKNSKSWFTLLEDGAFLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|148251634|ref|YP_001236219.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1]
 gi|146403807|gb|ABQ32313.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1]
          Length = 812

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/804 (56%), Positives = 588/804 (73%), Gaps = 7/804 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +    + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L GYA 
Sbjct: 13  EPATANDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYAS 72

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V LN D S TV D+GRGIP D+HK EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 73  RVEVVLNADNSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 132

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALSS L+LRI RE   + + F +G    PL V G A    GTEVTFL S++ F
Sbjct: 133 VGVSVVNALSSKLQLRIWREDKEHLIEFAHGDAVAPLKVVGEAQGRRGTEVTFLASTETF 192

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            + +++Y TL+HRLREL+FLNS V I L D R    +   MFY GG+E FV YLDR+KK 
Sbjct: 193 KMVEYDYATLEHRLRELAFLNSGVHIVLSDMRHAVEKREEMFYSGGVEEFVRYLDRNKKA 252

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++ SPI ++   + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+  
Sbjct: 253 IVPSPIMVRSEVNGITVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNG 312

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +    +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+
Sbjct: 313 YADAH--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINE 370

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LSAW EEHP EAK +V KV+ A+  R+AAR+AR+LTR+  + +IASLPGKLADC E+DP
Sbjct: 371 ALSAWFEEHPSEAKTVVGKVIQAAAAREAARKARELTRKNPLNNIASLPGKLADCQEKDP 430

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVER R DKMLSS++IGTLITALG
Sbjct: 431 AKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERVRPDKMLSSEQIGTLITALG 490

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGI  D F I+KLRYHKII+MTDADVDGAHIRTLLLTFF+RQM  +I  G LYI +PPLY
Sbjct: 491 TGI-SDDFSIDKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQMRQIIDRGHLYIAQPPLY 549

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +TRGKS QY+KDE +LEDYLI   L  +              DL   +++A  +  +++
Sbjct: 550 KVTRGKSEQYLKDERALEDYLIGTGLD-DCVFKSAEGEERKGRDLLALVEEARIVRNILR 608

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGS-INN 659
           + +  +D+T +EQA I+GV   +  ++I    + A  +A RL+ +A++ E+ W G  +  
Sbjct: 609 NLHSRYDRTVVEQAAIAGVLRADITRDIATADAAAEYIAKRLDVLADEVERGWIGHFVEG 668

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
                +R  RGV++  V++ + + S  ++    ++ R++E Y     L        I GP
Sbjct: 669 QGFTFERTVRGVKDVAVIDDALLASADARKLDDYAARLQEAYAKPGFLRRGDAPTVIHGP 728

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             L + +   GRKGI+MQRYKGLGEMN  QLWETTL+ + R+LL+VK+ +  +ADD+F++
Sbjct: 729 IDLFEAVTDAGRKGIAMQRYKGLGEMNPQQLWETTLDTEARTLLQVKVKEVDEADDIFTK 788

Query: 780 LMGDEVEPRREFIQENSLPSALDI 803
           LMGD VEPRREFIQ+NSL + +D+
Sbjct: 789 LMGDVVEPRREFIQDNSLSANVDV 812


>gi|293611381|ref|ZP_06693677.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826253|gb|EFF84622.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 822

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/814 (49%), Positives = 539/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G ++E  + +G    PL V G   + +GT V F PS   
Sbjct: 131 GVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSGTTVRFWPSELT 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKT 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I +++A++WN+ Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADTENGIGVEVALQWNESYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELSLHTNAEAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648
           +     +  + ++  +   VF  + + +       A +           L   ++  A +
Sbjct: 608 QRLTLRYPASLLDALLEVEVFKSDQNHDEAYVQQWADQVRDIITRLQPSLRPEISLEAFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    +      +   ++L+ + + S         S            L 
Sbjct: 668 RENAQGEKSAHYWPRITVYVHNLPHAYLLDAALLNSAEYARLLKNSKSWFTLLEDGAFLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|192288437|ref|YP_001989042.1| DNA gyrase subunit B [Rhodopseudomonas palustris TIE-1]
 gi|192282186|gb|ACE98566.1| DNA gyrase, B subunit [Rhodopseudomonas palustris TIE-1]
          Length = 813

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/799 (58%), Positives = 599/799 (74%), Gaps = 6/799 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A  + V 
Sbjct: 18  AEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHASRVEVI 77

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV D+GRGIP D+HK EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV
Sbjct: 78  LNADGSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSS L LR+ R    + + F +G    PL V G A    GTEVTF  S++ F+  ++
Sbjct: 138 VNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRGTEVTFYASAETFTHIEY 197

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++ TL+HRLREL+FLNS V I L D R    +   M Y+GG+  FV YLDR+KKP++ +P
Sbjct: 198 DFATLEHRLRELAFLNSGVYIVLSDMRHAVEKREEMRYEGGVTEFVKYLDRNKKPIVPTP 257

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + I    + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQIT Y E  
Sbjct: 258 VVIGAELNGIMVEAALWWNDTYHENVLCFTNNIPQRDGGTHLAGFRAALTRQITGYAE-- 315

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
            GSKK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ L+AW
Sbjct: 316 AGSKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALAAW 375

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEEHP EAKI++ KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP KSEL
Sbjct: 376 LEEHPSEAKIVIGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPAKSEL 435

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITALGTGIG+
Sbjct: 436 FIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGTGIGR 495

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           + FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI  G+LYI +PPLY +TRG
Sbjct: 496 EDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGYLYIAQPPLYKVTRG 555

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           KS QY+KDE +LEDYLI   L  +      +  V    DL   ++DA  I   + + +  
Sbjct: 556 KSEQYLKDERALEDYLIATGLD-DCAFKLANGEVRGGRDLLALVEDARAIRSTLHNLHSR 614

Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSINNSD-ILV 664
           ++++ +EQA I+GV +     +I      A+ +A RL+ +A++ E+ W G     +    
Sbjct: 615 YNRSVVEQAAIAGVLSPRITTDIATANEAAAYIARRLDALADEVERGWVGHFTEGEGFRF 674

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
           +R  RGV+E   ++ + + S  ++    ++  ++E Y     L     +  I GP SL +
Sbjct: 675 ERTVRGVKEVAAIDDALLGSADARKLDEYAAVLQEVYPRPGVLRRKEAETAIHGPISLFE 734

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +   GRKG+++QRYKGLGEMN SQLWETTL+ + RSLL+VK+ +  +ADD+F++LMGD 
Sbjct: 735 AVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDV 794

Query: 785 VEPRREFIQENSLPSALDI 803
           VEPRREFIQENSL + +D+
Sbjct: 795 VEPRREFIQENSLHATVDV 813


>gi|197106831|ref|YP_002132208.1| DNA gyrase, B subunit [Phenylobacterium zucineum HLK1]
 gi|196480251|gb|ACG79779.1| DNA gyrase, B subunit [Phenylobacterium zucineum HLK1]
          Length = 812

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/820 (56%), Positives = 584/820 (71%), Gaps = 25/820 (3%)

Query: 1   MSDNIQN----------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLD 50
           MS+  +             Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+D
Sbjct: 1   MSEENETPENGNGGNGQGEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60

Query: 51  NAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           NAIDE+L G+A  + V LN DGSCTV+D+GRGIPTD+H+ EG+SAAEVIMT+LHAGGKF+
Sbjct: 61  NAIDEALAGHATKVEVILNADGSCTVTDDGRGIPTDIHEGEGVSAAEVIMTQLHAGGKFD 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG---- 166
           Q SYKVSGGLHGVGVSVVNALS +LKL++ R G  +EM F  G    PL VTG A     
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSDFLKLKVFRGGMQHEMEFRRGDAVAPLAVTGKAPLRDN 180

Query: 167 --NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               TGT VTFLPS+  F   +F+  TL+HRLREL+FLNS V I L D R  EP E  M 
Sbjct: 181 GEFLTGTHVTFLPSTATFRFIEFDLKTLEHRLRELAFLNSGVTIWLKDLRGAEPFEEVMH 240

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GGIEAFV +LD+ K PLM+ PI ++G +D + +D+A+ WNDGYHENVLCFTNNIPQ+D
Sbjct: 241 YEGGIEAFVRHLDKAKHPLMKEPIVVRGRKDTVEVDMALWWNDGYHENVLCFTNNIPQRD 300

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+  RSALTR IT+Y E+S  +K++K SV G+D REG T VLS+K+PDP+FSSQTK
Sbjct: 301 GGTHLAAFRSALTRIITNYAEQSGAAKREKVSVSGEDAREGLTCVLSVKVPDPKFSSQTK 360

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEVR  VE  V++GLS W EEHP EAK+IV+K+ +A+  R+AAR+AR+LTRRK  
Sbjct: 361 DKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKLIVQKITEAAAAREAARKARELTRRKSA 420

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LDI SLPGKLADC E+DP KSELFLVEGDSAGGSAKQ R+RENQAILPLRGKILNVERAR
Sbjct: 421 LDITSLPGKLADCQEKDPAKSELFLVEGDSAGGSAKQARNRENQAILPLRGKILNVERAR 480

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           FDKMLSS ++GTLITALG GIG+D FDI KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQ
Sbjct: 481 FDKMLSSDQVGTLITALGAGIGRDDFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQ 540

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           MP +I  G+LYI +PPLY  T+GKS +Y+KD+  LE YL+++     +     S   ++ 
Sbjct: 541 MPEVIDRGYLYIAQPPLYKATKGKSSRYLKDDAELEAYLVDEGTDGAMLELA-SGERLAG 599

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            DL   ++ +      I+          IEQA ++G+F    D           A R + 
Sbjct: 600 QDLLRLVNASRTARANIQRLSARAPAFAIEQAALAGLFGEGGDPAAA-------ARRFDL 652

Query: 645 IAEKSEKSWHGSINN-SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            AE+ +  W G        +  R+ RGV E+ VL+   + +  ++     +  + E +  
Sbjct: 653 YAEEGDGPWSGERGEGGGYVFSRVKRGVSERVVLDDVLLHAADARRIAERAKELAETFSG 712

Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
             +         + GP  L++ +   GR+G+S+QRYKGLGEMN  QLWETTL+ D R+LL
Sbjct: 713 PATFTRKERTAVVRGPLDLVNAVMENGRRGLSIQRYKGLGEMNPEQLWETTLDADARTLL 772

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +VK+T A  ADD+F+RLMGD VEPRREFIQEN+L + +D+
Sbjct: 773 QVKVTHADDADDMFTRLMGDLVEPRREFIQENALDAEVDV 812


>gi|146337179|ref|YP_001202227.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS278]
 gi|146189985|emb|CAL73977.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS278]
          Length = 812

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/804 (56%), Positives = 593/804 (73%), Gaps = 7/804 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +    + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L GYA 
Sbjct: 13  EPATANEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYAT 72

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V LN D S TV D+GRGIP  +HK+EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 73  RVEVVLNADNSVTVRDDGRGIPVGIHKDEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 132

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALSS L+LRI RE   + + F +G    PL V G +    GTEVTFL S++ F
Sbjct: 133 VGVSVVNALSSKLELRIWREDKEHLIEFAHGDAVAPLRVVGESKGKRGTEVTFLASTETF 192

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            + +++Y TL+HRLREL+FLNS V I L D R    +   MFY GG+E FV YLDR+KK 
Sbjct: 193 KMVEYDYATLEHRLRELAFLNSGVHIILSDMRHAVEKREEMFYSGGVEEFVKYLDRNKKA 252

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++ +PI ++   + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+  
Sbjct: 253 IVPNPIMVRSEANGITVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNG 312

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+
Sbjct: 313 YAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINE 370

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LSAW EEHP EAK +V KV+ A+  R+AAR+AR+LTR+  + +IASLPGKLADC E+DP
Sbjct: 371 ALSAWFEEHPSEAKTVVGKVIQAAAAREAARKARELTRKNPLNNIASLPGKLADCQEKDP 430

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVER R DKMLSS++IGTLITALG
Sbjct: 431 AKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERVRPDKMLSSEQIGTLITALG 490

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGI  D F I+KLRYHKII+MTDADVDGAHIRTLLLTFF+RQM  +I  G LYI +PPLY
Sbjct: 491 TGI-SDDFSIDKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQMRQIIDRGHLYIAQPPLY 549

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +TRGKS QY+KDE +LEDYLI   L + +    D +      DL   +++A  +  +++
Sbjct: 550 KVTRGKSEQYLKDERALEDYLIGTGLDDCVFRTADGEE-RKGRDLLALVEEARLVRNILR 608

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGS-INN 659
           + +  +D+  +EQA I+GV   +  ++I    + A  +A RL+ +AE+ E+ W G  +  
Sbjct: 609 NLHSRYDRKVVEQAAIAGVLRGDITRDIATADAAAEYIAKRLDVLAEEVERGWIGHFVEG 668

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
                +R  RGV++  V++ + + S  ++    ++ R+++ Y    +L     +  I GP
Sbjct: 669 QGFTFERTVRGVKDVAVIDDALLASADARKLDDYAARLQDAYAKPGALRRGDTQTVIHGP 728

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             L + +   GRKGI+MQRYKGLGEMN  QLWETTL+ + R+LL+VK+ +  +ADD+F++
Sbjct: 729 VDLFEAVTDSGRKGIAMQRYKGLGEMNPQQLWETTLDTEARTLLQVKVKEVDEADDIFTK 788

Query: 780 LMGDEVEPRREFIQENSLPSALDI 803
           LMGD VEPRREFIQ+NSL + +D+
Sbjct: 789 LMGDVVEPRREFIQDNSLSANVDV 812


>gi|308447343|ref|XP_003087405.1| hypothetical protein CRE_12456 [Caenorhabditis remanei]
 gi|308256863|gb|EFP00816.1| hypothetical protein CRE_12456 [Caenorhabditis remanei]
          Length = 822

 Score =  905 bits (2340), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/814 (50%), Positives = 540/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEPTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +V+DNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEILVTIHEDESVSVADNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L+L I R G+I++  + +G    PL + G     TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKIVGDVE-TTGTIVRFWPSTET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y+++ K 
Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVRIVLRDERVA--LEHVFDYEGGLSEFVKYINQGKT 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTTQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 SYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G++YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGYIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I    L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELELRVNAEAPAIRGVALEKVIADYQTSQKSL 607

Query: 602 KDFYPNHDKTFIEQA--VISGVFNCESDQEINVSLASKLANR-----------LNFIAEK 648
           +     +  T ++    +     +   DQ+       KL              L+  +  
Sbjct: 608 QRLTVRYPATLLDGLLSLEHFKLDQNHDQDYVQQWGEKLRAAIETTQPSLRPVLSLESFD 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +           +      +   ++L+   + S   K     S            L 
Sbjct: 668 KETADGLKTTIYFPRITIYVHNLPHSYLLDAGLLASGEYKRLLQNSKSWFTLLEEGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               KI ++    +   I +  R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGERKINVSTFHQVWQHILTDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +F+ LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFACLMGDDVEPRRAFIEENALNADID 821


>gi|39933084|ref|NP_945360.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009]
 gi|39652709|emb|CAE25448.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009]
          Length = 813

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/799 (58%), Positives = 599/799 (74%), Gaps = 6/799 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A  + V 
Sbjct: 18  AEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHASRVEVI 77

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV D+GRGIP D+HK EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV
Sbjct: 78  LNADGSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSS L LR+ R    + + F +G    PL V G A    GTEVTF  S++ F+  ++
Sbjct: 138 VNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRGTEVTFYASAETFTHIEY 197

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++ TL+HRLREL+FLNS V I L D R    +   M Y+GG+  FV YLDR+KKP++ +P
Sbjct: 198 DFATLEHRLRELAFLNSGVYIVLSDMRHAVEKREEMRYEGGVTEFVKYLDRNKKPIVPTP 257

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + I    + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQIT Y E  
Sbjct: 258 VVIGAELNGIMVEAALWWNDTYHENVLCFTNNIPQRDGGTHLAGFRAALTRQITGYAE-- 315

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
            GSKK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ L+AW
Sbjct: 316 AGSKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALAAW 375

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEEHP EAKI++ KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP KSEL
Sbjct: 376 LEEHPSEAKIVIGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPAKSEL 435

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITALGTGIG+
Sbjct: 436 FIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGTGIGR 495

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           + FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI  G+LYI +PPLY +TRG
Sbjct: 496 EDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGYLYIAQPPLYKVTRG 555

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           KS QY+KDE +LEDYLI   L  +      +  V    DL   ++DA  I   + + +  
Sbjct: 556 KSEQYLKDERALEDYLIATGLD-DCAFKLANGEVRGGRDLLALVEDARAIRSTLHNLHSR 614

Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSINNSD-ILV 664
           ++++ +EQA I+GV +     +I      A+ +A RL+ +A++ E+ W G     +    
Sbjct: 615 YNRSVVEQAAIAGVLSPRITTDIATANEAAAYIARRLDALADEVERGWVGHFTEGEGFRF 674

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
           +R  RGV+E   ++ + + S  ++    ++  ++E Y     L     +  I GP SL +
Sbjct: 675 ERTVRGVKEVAAIDDAMLGSADARKLDEYAAVLQEVYPRPGVLRRKEAETAIHGPISLFE 734

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +   GRKG+++QRYKGLGEMN SQLWETTL+ + RSLL+VK+ +  +ADD+F++LMGD 
Sbjct: 735 AVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDV 794

Query: 785 VEPRREFIQENSLPSALDI 803
           VEPRREFIQENSL + +D+
Sbjct: 795 VEPRREFIQENSLHATVDV 813


>gi|260463130|ref|ZP_05811332.1| DNA gyrase, B subunit [Mesorhizobium opportunistum WSM2075]
 gi|259030980|gb|EEW32254.1| DNA gyrase, B subunit [Mesorhizobium opportunistum WSM2075]
          Length = 823

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 494/825 (59%), Positives = 618/825 (74%), Gaps = 24/825 (2%)

Query: 1   MSDNIQNSS-----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD I+N++     Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSDQIENTNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD++TVTLN DGS TV DNGRGIPTD+H  EGISAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHADLVTVTLNPDGSVTVIDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---------GSAG 166
           VSGGLHGVGVSVVNALS+WLKL+I+R G I+EMSF +G  D PL VT         G+  
Sbjct: 121 VSGGLHGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKVTGAYEQDKQPGTYE 180

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             +G+E+TF PSS+ F++ +F++ TL+HRLREL+FLNS V+I L D R  +     + Y 
Sbjct: 181 GRSGSEITFFPSSETFTMVEFDFGTLEHRLRELAFLNSGVRIVLTDARHADVLRHELHYD 240

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+E FV YLDR KKPL+  PI I+  RD I++++AM WND YHENVL FTNNIPQ+DGG
Sbjct: 241 GGLEEFVKYLDRVKKPLIDKPIAIKAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGG 300

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R ALTRQIT Y + S  +KK+K S+IGDDCREG T+VLS+K+PDP+FSSQTK+K
Sbjct: 301 THLAGFRGALTRQITGYGDSSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQTKDK 360

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR VVE  VN+ L  WLEEHP E K+++ KV+ A+  R+AAR+ARD+T RK  L 
Sbjct: 361 LVSSEVRPVVEGLVNEALGTWLEEHPTEGKVVIDKVIQAAAAREAARKARDIT-RKSSLG 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           + SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD
Sbjct: 420 VTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           +ML S  IGTLITALGT IG+D F+ +KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP
Sbjct: 480 RMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMP 539

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G LYI +PPLY +TRGKS QY+K+E + E++LI   L E       S  V +  D
Sbjct: 540 ELIERGHLYIAQPPLYKVTRGKSSQYIKNESAFEEFLIGSGLEEASL-ALGSGEVRAGQD 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNF 644
           LR+ IDDAL + +LI   +  +++  +EQA I+G  N +   ++    ++A ++A RL+ 
Sbjct: 599 LRSAIDDALAVRQLINGLHTRYNRGVVEQAAIAGGLNPDVFADLGRANAMAERVAQRLDI 658

Query: 645 IAEKSEKSWHG-----SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
           IAE +E+ W G     +      + +R  R V+E   L+ + I S  ++    ++ R+ E
Sbjct: 659 IAEDTERGWTGRMSTSNEGIGGYVFERTVRSVKEYAHLDMALINSADARQLDRYAQRLSE 718

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
            Y T   L        ++GP +LL+ +F+ GRKG++MQRYKGLGEMNA QLWETTL+P+ 
Sbjct: 719 VYGTPPVLRRKDISETVSGPLALLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNV 778

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           RSLL+VK+ DA+ AD LFSRLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 779 RSLLQVKVNDATDADSLFSRLMGDEVEPRREFIQDNALSVANLDI 823


>gi|299768254|ref|YP_003730280.1| DNA gyrase, B subunit [Acinetobacter sp. DR1]
 gi|298698342|gb|ADI88907.1| DNA gyrase, B subunit [Acinetobacter sp. DR1]
          Length = 822

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/814 (49%), Positives = 539/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L I R G ++E  + +G    PL V G   + +GT V F PS++ 
Sbjct: 131 GVGVSVVNALSRKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSGTTVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKT 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       + + I +++A++WN+ Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADTDNGIVVEVALQWNESYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENIIKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELSLHTNAEAPAITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFI-----------AEK 648
           +     +  + ++  +    F  + + +       A ++   +  +           + +
Sbjct: 608 QRLTLRYPASLLDALLEVEAFKSDQNHDQAYVQQWADQVKAIITRLQPSLRPEITLESFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    +      +   ++L+ + + S         S            L 
Sbjct: 668 RENAQGEKSAHYWPRITVYVHNLPHAYLLDAALLNSAEYARLLKNSKSWFSLLEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|114704720|ref|ZP_01437628.1| DNA gyrase subunit B [Fulvimarina pelagi HTCC2506]
 gi|114539505|gb|EAU42625.1| DNA gyrase subunit B [Fulvimarina pelagi HTCC2506]
          Length = 812

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 490/802 (61%), Positives = 613/802 (76%), Gaps = 6/802 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+AD +TV
Sbjct: 12  SAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADHVTV 71

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TLN DGSC+VSDNGRGIPT +H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVS
Sbjct: 72  TLNADGSCSVSDNGRGIPTGIHSGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 131

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS WLKL+I+++G I+EM+F +G+ D PL V G AG  TGTE+TF+PS D F  V 
Sbjct: 132 VVNALSVWLKLKIRQKGKIFEMAFTHGVADGPLAVVGDAGEVTGTEITFMPSHDTFRGVT 191

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+Y TL+HRLREL+FLNS V+I L DKR  + + I +FY+GG+EAFV Y+DR KKPL+ 
Sbjct: 192 AFDYSTLEHRLRELAFLNSGVRIILTDKRPADEKRIELFYEGGLEAFVRYVDRAKKPLIS 251

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +PI + G +D I++++AM WND Y+ENVLCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E
Sbjct: 252 TPISLTGEKDGITVEVAMWWNDAYNENVLCFTNNIPQRDGGTHLAGFRGALTRQVGGYAE 311

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            S   KK+K ++ GDDCREG + +LS+K+PDP+FSSQTK+KLVSSEVR VVE+ VN GLS
Sbjct: 312 ASGLLKKEKVTLTGDDCREGLSCILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNQGLS 371

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            W EE+P EAKI++ KV++A+  RDAARRAR+LTRRKG LDI SLPGKLADC ERDP KS
Sbjct: 372 EWFEENPQEAKIVISKVVEAAAARDAARRARELTRRKGALDITSLPGKLADCQERDPAKS 431

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+ML S +IGTLITALGT I
Sbjct: 432 EIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFDRMLGSDQIGTLITALGTSI 491

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI  G ++I +PPLY +T
Sbjct: 492 GKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHVFIAQPPLYKVT 551

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           RGK  QY+KDE++LE+YLI   L +       S  V +  DLR  +DDAL +  ++   +
Sbjct: 552 RGKQSQYLKDEKALENYLIEGGLDDASL-TLASGEVRAGRDLRTAVDDALAVRNVLSGLH 610

Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
             +D++ +EQA I G  + E     +     A ++A RL+ IAE++E+ W G        
Sbjct: 611 SRYDRSVVEQATILGALSPEVADHPQDGPETAKRIAARLDLIAEETERGWTGEAVAGGYR 670

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY-LTILSLICNGDKIKITGPCSL 722
             R  RGV E   ++ + + S  +     ++ R+ E Y   + +L        I GP  L
Sbjct: 671 FMRTVRGVTEVQTIDAALLQSGDALALMRYAPRLREVYDGGVPTLARKDTVRDIAGPLQL 730

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L T+F +GRKGI+ QRYKGLGEMN+ QLWETTL+PD R+L+RVK+ DA+ AD+LF++LMG
Sbjct: 731 LITVFEVGRKGITTQRYKGLGEMNSDQLWETTLDPDARTLVRVKVQDATDADNLFAQLMG 790

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           DEV PRREFIQ+N+L    LDI
Sbjct: 791 DEVAPRREFIQDNALTVANLDI 812


>gi|83652312|gb|ABC36375.1| DNA gyrase, B subunit [Burkholderia thailandensis E264]
          Length = 867

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/826 (46%), Positives = 540/826 (65%), Gaps = 27/826 (3%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++       +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 46  MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 105

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113
            GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q S
Sbjct: 106 AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 165

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161
           YKVSGGLHGVGVS VNALSSWL+L ++R+G  + M F  GI              +P+ V
Sbjct: 166 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQV 225

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G    + GTEV F+  S IF   +++YD L  R+RELSFLN+ V+I L D+RS +    
Sbjct: 226 IGDTE-NRGTEVHFMADSTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--D 282

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              + GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIP
Sbjct: 283 DFAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 342

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSS
Sbjct: 343 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSS 402

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRR
Sbjct: 403 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 462

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE
Sbjct: 463 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 522

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF
Sbjct: 523 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 582

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +RQMP +I  G++YI +PPLY +  G+  +Y+KD+  L  +++  +L     +  ++   
Sbjct: 583 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQGSELVPTENGTP 642

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS + L       L    +++     +D   +E  +     +  S +    + A  LA  
Sbjct: 643 ISGDALGELARSYLLARGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 701

Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
           L+  ++   +   ++        + V+R   G     V++     +   +     +N  +
Sbjct: 702 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 761

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
                  ++        +      +  + +   + +S QRYKGLGEMN  QLWETT++P 
Sbjct: 762 GLIGAGAAIKRGERSSNVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPA 821

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 822 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 867


>gi|71281227|ref|YP_266786.1| DNA gyrase, B subunit [Colwellia psychrerythraea 34H]
 gi|71146967|gb|AAZ27440.1| DNA gyrase, B subunit [Colwellia psychrerythraea 34H]
          Length = 814

 Score =  903 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/815 (49%), Positives = 541/815 (66%), Gaps = 18/815 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              + Y + SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EVLDN+IDE+L G+   I
Sbjct: 2   TVENEYSSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDEALAGHCTDI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGLHG 122
            VT+++DGS +V D+GRGIPT++H EEGISAAEVIMT LHAGGKF      YKVSGGLHG
Sbjct: 62  IVTIHLDGSVSVQDDGRGIPTEIHPEEGISAAEVIMTVLHAGGKFGGEDSGYKVSGGLHG 121

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS  LKL I+R+G ++E  +  G+ + PL   G   + TGTEV F PS++ F
Sbjct: 122 VGISVVNALSEKLKLNIRRDGKLFEQFYHIGVAEAPLAEVG-VSDKTGTEVRFWPSTNTF 180

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   F+Y+ L  R+RELSFLNS V I LID+R  E +E    Y GGI+AFV YL+ +K P
Sbjct: 181 TDVLFHYEILVKRIRELSFLNSGVSIRLIDER-EEGKEDHFHYDGGIQAFVDYLNTNKTP 239

Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           + +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHLSG R+ALTR + 
Sbjct: 240 VNEEIFYFDLEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLSGFRTALTRTLN 299

Query: 302 SYVEKSFGSKKDK-----RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           SY+ K   +K  K      S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 300 SYMTKEGLNKTKKGGATETSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAV 359

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L  +L E+P  A+ I+ K++DA+  R+AAR+AR++TRRKGVLDIA LPGKLAD
Sbjct: 360 EQAMGEKLGEYLLENPSIARTIIMKIVDAARAREAARKAREMTRRKGVLDIAGLPGKLAD 419

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 420 CQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 479

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG GIG+D ++  KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G ++I
Sbjct: 480 LITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIMERGHIFI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +GK  +Y+KD++ L +YL   +L        +    I+   L   ++    
Sbjct: 540 AQPPLYKVKKGKQERYIKDDDGLTEYLTTLALDNASIHVNEDAPAITGAALEQLVNQFRN 599

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRL-----NFIAEKS 649
              +IK          +E+ V S   + +   +     + A  L  +L     N    K 
Sbjct: 600 TMDIIKRLSRQIPADILEKMVYSSTISADDFADEAKVNAWAKNLITQLENQDGNGSIYKI 659

Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           E  ++   N           G+ +++      I S         +  I +       +  
Sbjct: 660 EVKYNQERNIYFPNFIVRKHGIDKEYHCSYEFIQSKEFASIMALNTSINDLMEEGAYVKR 719

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                        L+ + +  ++G  +QRYKGLGEMN  QLWETT++P+TR +L+V I D
Sbjct: 720 GDKVNPAANFEDALEWLMAESKRGQYIQRYKGLGEMNPEQLWETTMDPETRRMLQVTIED 779

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A  AD LF+ LMGD VEPRR+FI++N+L    LDI
Sbjct: 780 AIAADQLFTTLMGDHVEPRRKFIEDNALKVSNLDI 814


>gi|85705680|ref|ZP_01036777.1| DNA gyrase subunit B [Roseovarius sp. 217]
 gi|85669670|gb|EAQ24534.1| DNA gyrase subunit B [Roseovarius sp. 217]
          Length = 775

 Score =  903 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/775 (56%), Positives = 551/775 (71%), Gaps = 3/775 (0%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  SGLHHM+YEV+DN IDE+L G+AD + VT++ D S +VSDNGRGIP D+H+
Sbjct: 1   MYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVNVTIHADSSVSVSDNGRGIPVDMHE 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
            EG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVVNALS WL+LRI R G  +   
Sbjct: 61  GEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSEWLELRIWRNGKEHYAR 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F  G     L V G A    GTEV FL S + FS  D+ ++TL+ RLREL+FLNS V+I 
Sbjct: 121 FEGGFTVESLRVVGDANGRKGTEVRFLASLETFSNLDYIFETLEKRLRELAFLNSGVRII 180

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+R  EP    +FY+GG++ FV YLDRHK P M  PI I G RD+I +++AM WND Y
Sbjct: 181 LRDERPTEPLMSELFYEGGVKEFVKYLDRHKSPAMPEPIFITGERDDIGVEVAMWWNDSY 240

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           HE VL FTNNIPQ+DGGTH++G R ALTR I +Y + +  +KK+K +  GDD REG T V
Sbjct: 241 HETVLPFTNNIPQRDGGTHMAGFRGALTRTINNYAQTTGIAKKEKVTFTGDDAREGLTCV 300

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           LS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ L+ W EE+P  A+IIV K+++A+  R
Sbjct: 301 LSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLAEWFEENPQIARIIVSKIIEAAHAR 360

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           +AAR+ARDLTRRK  +D+  L GKL DCS +DP K+ELFLVEGDSAGGSA+ GR R  QA
Sbjct: 361 EAARKARDLTRRKNPMDVNFLAGKLKDCSSKDPSKTELFLVEGDSAGGSAQTGRDRGTQA 420

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           +LPLRGKILNVERARFD+ML SQEIG L+ ALGTGIG+D FDI KLRYHKI+IMTDADVD
Sbjct: 421 VLPLRGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFDIKKLRYHKIVIMTDADVD 480

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           GAHIRTLLLTFF+RQMP LI  G+LYI +PPLY + RGKS  Y+KD+  LEDYLI Q  +
Sbjct: 481 GAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYKVMRGKSEVYLKDQAGLEDYLIAQGTT 540

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
           +        +  I+  DL   +++A +  ++++ F  ++ +  +EQA I+  F       
Sbjct: 541 DAGLRLGTGEE-IAGPDLVRVVEEARQAKRILEAFPTHYPRHILEQAAIAEAFLAGRVDS 599

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
               +A  +A RL+ I+ + E+ W G    ++ I + R  RGV+E   L+G  +    ++
Sbjct: 600 DLQGVADTVAQRLDMISNEYERGWQGRPTQDNGIRLTRTVRGVEEMRTLDGPVLRGGEAR 659

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
                +  + E Y    +LI       I GP  LLD I   G KG+S+QRYKGLGEMN  
Sbjct: 660 KLSQMTTPLREIYRERATLIRKDRVQPIFGPLDLLDAILKEGEKGLSLQRYKGLGEMNPG 719

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           QLWETTL+P+ R+LL+VKI D ++ADDLF++LMGD VEPRREFIQEN+L    LD
Sbjct: 720 QLWETTLDPEARTLLQVKIDDVAEADDLFTKLMGDVVEPRREFIQENALNVANLD 774


>gi|92115637|ref|YP_575366.1| DNA gyrase subunit B [Nitrobacter hamburgensis X14]
 gi|91798531|gb|ABE60906.1| DNA gyrase subunit B [Nitrobacter hamburgensis X14]
          Length = 813

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/805 (57%), Positives = 594/805 (73%), Gaps = 6/805 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++      Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 12  TEPAAPVEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 71

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 72  TRVEVILNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTFL S + 
Sbjct: 132 GVGVSVVNALSSKLILRIWRKDKEHLIEFAHGDAVAPLKVVGEANGKRGTEVTFLASRET 191

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+  FV YLDR+KK
Sbjct: 192 FTNVEYDFATLEHRLRELAFLNSGVNILLSDLRRAVEKREQMMYDGGVVEFVKYLDRNKK 251

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            ++  PI I+   + + ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ 
Sbjct: 252 AMVPEPIMIRADMNGLGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVN 311

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y +    ++K++ ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N
Sbjct: 312 GYAD--AMARKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVIN 369

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+AW EEHP EAK+IV KV++A+  R+AAR+AR+LTRRKG LD+ASLPGKLADC ERD
Sbjct: 370 EALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLPGKLADCQERD 429

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITAL
Sbjct: 430 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITAL 489

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI  G LYI +PPL
Sbjct: 490 GTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPTLIEAGHLYIAQPPL 549

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +TRGKS QY+KDE +LEDYLI   L  +      +    S  DL+  ++DA  I  ++
Sbjct: 550 YKVTRGKSEQYLKDERALEDYLIETGLD-DCVFKLATGEDRSGRDLQALVEDARVIRNVL 608

Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
            + +  ++++ IEQA I+GV N    +D     + A  +A R++ +A++ E+ W G    
Sbjct: 609 HNMHGRYNRSVIEQAAIAGVLNPRVTADVATANAAADYIARRMDALADEVERGWIGRFTE 668

Query: 660 SD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
            +    +R  RGV++  +++ + + S  ++    ++ +++E Y     L     +  I G
Sbjct: 669 GEGFSFERTVRGVKDIAMIDDALLGSADARKLDEYAAKLQEAYPRPGLLRRKDTETPIHG 728

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  L + +   GRKG+++QRYKGLGEMN  QLWETTL+   RSLL+VKI +  +ADD+F+
Sbjct: 729 PVGLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDASERSLLQVKIKEVDEADDIFT 788

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
           +LMGD VEPRREFIQENSL + +D+
Sbjct: 789 KLMGDVVEPRREFIQENSLSANVDV 813


>gi|188474269|gb|ACD49734.1| DNA gyrase subunit B [Vibrio alginolyticus]
          Length = 778

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/778 (49%), Positives = 525/778 (67%), Gaps = 10/778 (1%)

Query: 22  DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81
           DAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I VT++ D S +VSD+GR
Sbjct: 1   DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVSDDGR 60

Query: 82  GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141
           GIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R
Sbjct: 61  GIPTEIHSEENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHR 120

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
            G+I+  ++ +G    PL V G   + TGT++ F PS++ FS  +F+YD L  RLRELSF
Sbjct: 121 GGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSF 179

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISID 260
           LNS V I L+D+R  +       Y+GGI+AFV +L+ +K P+++        R++ IS++
Sbjct: 180 LNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNKTPIIEKIFHFNSEREDGISVE 238

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GD
Sbjct: 239 VAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGD 298

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  
Sbjct: 299 DAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCS 358

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 359 KIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 418

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           QGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 419 QGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 478

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           IIMTDADVDG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + +GK  QY+KDEE++ 
Sbjct: 479 IIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQYIKDEEAMN 538

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
            Y ++ +L             ++   L   +       KL +     +    + + + + 
Sbjct: 539 QYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLAERMSRRYPSALVNELIYTP 598

Query: 621 VFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIARGVQE 673
               E   D  +  +   +L  +LN           E   H  +  +   +     GV  
Sbjct: 599 RLTPEQCHDASVVEAWTKQLVEQLNAKEVGASQYSYEVEQHEELGLNLPKIVVRTHGVTH 658

Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733
           +  +    + S         S  ++        +      + +      LD +     +G
Sbjct: 659 EHAISIDFLNSKEYGKLADLSEALDGLLEEGAYIKRGERTMPVANFAEALDWLVKESMRG 718

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +S QRYKGLGEMN  QLWETT++P+TR +++V I DA  AD LF+ LMGD+VEPRR F
Sbjct: 719 LSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTTLMGDQVEPRRNF 776


>gi|167834927|ref|ZP_02461810.1| DNA gyrase subunit B [Burkholderia thailandensis MSMB43]
          Length = 822

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/826 (46%), Positives = 538/826 (65%), Gaps = 27/826 (3%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++       +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113
            GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q S
Sbjct: 61  AGYCNDIRVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161
           YKVSGGLHGVGVS VNALSSWL+L ++R+G  + M F  GI              +P+ V
Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRMLEELDGEQVSPMQV 180

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +    
Sbjct: 181 IGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDLRSGKE--D 237

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              + GG++ FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNIP
Sbjct: 238 DFAFAGGVKGFVEYINKTKSVLHPTIFHVNGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 297

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSS
Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSS 357

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRR
Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAARKAREMTRR 417

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE
Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR+DK+LSS++I TL+TALG GIG+D +++ KLRYH+IIIMTDADVDGAHIRTLLLTFF
Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFF 537

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +RQMP +I  G++YI +PPLY +  G+  +Y+KD+  L  +++  +L     +  ++   
Sbjct: 538 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDAELNAHMLRLALQGSELVPTENGTP 597

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS + L       L    +++     +D   +E  +     +  S +    + A  LA  
Sbjct: 598 ISGDALGELARSYLLAQGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 656

Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
           L+  ++   +   ++        + V+R   G     V++     +   +     +N  +
Sbjct: 657 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 716

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
                  ++        ++     +  + +   + +S QRYKGLGEMN  QLWETT++P 
Sbjct: 717 GLIGAGAAIKRGERGSNVSDFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPA 776

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 822


>gi|3550425|gb|AAC34893.1| DNA gyrase B subunit [Methylovorus sp. SS1]
          Length = 799

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/801 (48%), Positives = 537/801 (67%), Gaps = 8/801 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + YD+ SI+IL+GLDAV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+ D I V 
Sbjct: 2   TDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVI 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEE----GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           ++ D S ++SDNGRGIPTD+ +++      SAAE++MT LHAGGKF+Q SYKVSGGLHGV
Sbjct: 62  IHPDNSVSISDNGRGIPTDIKQDDIKAVKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS WL+L+I R G +++M F  G    P+ VTG      GTEV FL S++ F 
Sbjct: 122 GVSVVNALSDWLRLKIYRNGQVHQMEFRRGEAVRPVAVTG-TTERKGTEVHFLASTETFG 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V +F+++ L  R+RELSFLN+ V+I LID+R+ +       + GG+  FV Y++R K  L
Sbjct: 181 VVEFHFEILAKRIRELSFLNNGVKIELIDQRNGKS--ENFAHSGGVRGFVEYMNRSKTVL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              P    G +D ++I+++M+WND Y E V CFTNNIPQ+DGGTHL+GLR+A+TR + +Y
Sbjct: 239 HPKPFYAVGEKDGMTIEVSMQWNDSYAETVQCFTNNIPQRDGGTHLTGLRTAMTRTLNNY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E++  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSEV+ VV+  V   
Sbjct: 299 IEQNELAKKAKIETTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPVVQEVVAAK 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P++AK+I  K++DA+  RDAAR+AR++TRRKG +D   LPGKLADC ERDP 
Sbjct: 359 LAEFLLENPVDAKVICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLADCQERDPT 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDK+LSSQEI TLITA+GT
Sbjct: 419 KCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIATLITAMGT 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D F  + +RYH+IIIMTDADVDGAHIRTLLLTFF+RQM  L+  G +YI +PPLY 
Sbjct: 479 GIGKDDFSADNVRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIYIAQPPLYK 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK  +Y+KD++ L+ YL+  SL     L  +    ++   L       +  + +I+ 
Sbjct: 539 VKQGKDERYLKDQQELDQYLLQSSLKGAELLTREGGETLAGEQLAEIAKQMVLTEAVIRR 598

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
               +D++ +              +    ++A +L   L     +   +         + 
Sbjct: 599 LRSLYDESVLRALQNVEGTVELDTEAKANAVAEQLRPLLGHTGSEVIVAQDLEAGTYRLE 658

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V +   G  +  V++   + S   +     S  ++       S+        ++   + L
Sbjct: 659 VNKYVHGNLQSCVIDTDFLASGDYRQISKMSVMLQGLLGEGASIKRGEKSQPVSNFKAAL 718

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D +    +  +++QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F+ LMGD
Sbjct: 719 DWLLDEAKHNLNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVQIDDAIAADEIFTTLMGD 778

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +VEPRR FI+ N+L    LD+
Sbjct: 779 QVEPRRAFIEGNALGVNNLDV 799


>gi|167582968|ref|ZP_02375842.1| DNA gyrase subunit B [Burkholderia thailandensis TXDOH]
          Length = 822

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/826 (46%), Positives = 539/826 (65%), Gaps = 27/826 (3%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++       +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113
            GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q S
Sbjct: 61  AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161
           YKVSGGLHGVGVS VNALSSWL+L ++R+G  + M F  GI              +P+ V
Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQV 180

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +    
Sbjct: 181 IGDTE-NRGTEVHFMADQTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--D 237

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              + GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIP
Sbjct: 238 DFAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 297

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSS
Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSS 357

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRR
Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 417

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE
Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF
Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +RQMP +I  G++YI +PPLY +  G+  +Y+KD+  L  +++  +L     +  ++   
Sbjct: 538 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQGSELVPTENGTP 597

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS + L       L    +++     +D   +E  +     +  S +    + A  LA  
Sbjct: 598 ISGDALGELARSYLLARGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 656

Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
           L+  ++   +   ++        + V+R   G     V++     +   +     +N  +
Sbjct: 657 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 716

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
                  ++        +      +  + +   + +S QRYKGLGEMN  QLWETT++P 
Sbjct: 717 GLIGAGAAIKRGERSSNVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPA 776

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 822


>gi|304394414|ref|ZP_07376337.1| DNA gyrase, B subunit [Ahrensia sp. R2A130]
 gi|303293854|gb|EFL88231.1| DNA gyrase, B subunit [Ahrensia sp. R2A130]
          Length = 858

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/806 (59%), Positives = 602/806 (74%), Gaps = 10/806 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            +  Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DN IDE L G+AD + 
Sbjct: 53  NSEEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEVLAGHADAVN 112

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+N DGS TV+DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGV
Sbjct: 113 VTINNDGSVTVTDNGRGIPVDMHEEEGMSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGV 172

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184
           SVVNALS  LKLRI R    +E+SF +G+ D PL + G A    +GTE+TF+PSS+ F+ 
Sbjct: 173 SVVNALSVSLKLRIARNDKWHEISFTHGVSDGPLEIVGDAEAGYSGTELTFMPSSETFTN 232

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L+HRLREL+FLNS  +I L D R    ++  ++Y+GG++ FV YLDR K  L+
Sbjct: 233 IKFDFDRLEHRLRELAFLNSGCRIILSDDRGGADKQTELYYEGGLKEFVRYLDRAKGALI 292

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           ++PI ++  RD I+++LA+ WND Y+ENVLCFTNNIPQ+DGGTHL+G R ALTRQ+T Y 
Sbjct: 293 EAPIYLKSERDGITVELALWWNDSYNENVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYA 352

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +     KK+K S+ GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEVR VVE  VN+ L
Sbjct: 353 DAQGIIKKEKVSLTGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVEGLVNETL 412

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             W EE+P +AK +V KV++A+  R+AAR+AR+LTRRKGVLDIASLPGKLADC E+DP  
Sbjct: 413 KEWFEENPADAKTVVSKVVEAATAREAARKARELTRRKGVLDIASLPGKLADCQEKDPAL 472

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+F+VEGDSAGGSAKQGRSR+NQAILPLRGK+LNVERARFDKMLSS++IGTLITALGTG
Sbjct: 473 SEIFIVEGDSAGGSAKQGRSRKNQAILPLRGKVLNVERARFDKMLSSEQIGTLITALGTG 532

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D F+++K RYHK+IIMTDADVDGAHIRTLLLTFFFRQMP LI  G+LYI +PPLY I
Sbjct: 533 IGPDEFNLDKARYHKVIIMTDADVDGAHIRTLLLTFFFRQMPELIERGYLYIAQPPLYSI 592

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RGKSLQY+KDEE+ E+Y I   L E       S  V+   DLR+ +D+ALK+ +L++  
Sbjct: 593 KRGKSLQYLKDEEAKENYFIENGLDEASLHLG-SGEVLVGADLRSVVDEALKMRRLLEGL 651

Query: 605 YPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD- 661
           +  ++   +EQ  I+G  + E  S Q     +    A RL+ +AE++EK W G     D 
Sbjct: 652 HTRYNHGMVEQLAIAGGLDVEAMSMQSHAEQVLRDTATRLDTLAEETEKGWQGDWRKKDD 711

Query: 662 ----ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
                +  R  RGV+E  VL+     S  ++        ++E Y     L   G    + 
Sbjct: 712 GRVEFVFHRTVRGVREAHVLDAGLTGSADARAIHGKHEHLDELYAQPARLERRGMSSDVF 771

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           GP SLL+ +F  G KGI++QRYKGLGEMNA QLWETTL+PD RSLL+VK+T+AS ADDLF
Sbjct: 772 GPRSLLEAVFKAGEKGITLQRYKGLGEMNAEQLWETTLDPDARSLLQVKVTEASDADDLF 831

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALD 802
           +RLMG+EVEPRR FIQ+N+L    LD
Sbjct: 832 TRLMGEEVEPRRNFIQDNALSVANLD 857


>gi|262377662|ref|ZP_06070882.1| DNA gyrase, B subunit [Acinetobacter lwoffii SH145]
 gi|262307421|gb|EEY88564.1| DNA gyrase, B subunit [Acinetobacter lwoffii SH145]
          Length = 823

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/815 (49%), Positives = 538/815 (66%), Gaps = 17/815 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ 
Sbjct: 11  TEQTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L+L I R G I+E  + +G    PL V G   N TGT V F PS++ 
Sbjct: 131 GVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDT-NRTGTRVRFWPSAET 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--NAEHVFDYEGGLSEFVKYINEGKT 247

Query: 242 PLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            L            + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR +
Sbjct: 248 HLNDIFHFTAAQADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGL 307

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +
Sbjct: 308 NNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTAVEQAM 367

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+
Sbjct: 368 NKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEK 427

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+SS E+GTLITA
Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMISSAEVGTLITA 487

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G +YI +PP
Sbjct: 488 LGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPP 547

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD ++LE YLI+ ++ E           I    L N I D     K 
Sbjct: 548 LYKLKKGKQEQYIKDNDALETYLISNAIDELELHISAEAPAIRGEALANVIADYQTSQKS 607

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEIN-------------VSLASKLANRLNFIAE 647
           +      +  + ++  +    F  +  ++ N              ++   L   L     
Sbjct: 608 LARLTQRYPASLLDALLSLEGFKLDQLEDKNYVETWGGNLRVAIEAIQPTLRPELTLERF 667

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
           + E +      +    +      +   ++L+   + S         S            L
Sbjct: 668 EKELADGQKTASWLPRITIYVHNLPHSYLLDSVLLGSSEYARLLKNSKSWFSLLEEGAYL 727

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                KI+++    +   I    R+G+ +QRYKGLGEMNA QLWETT++PD R++L+V +
Sbjct: 728 QKGDRKIQVSNFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPDNRNMLQVTV 787

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           TDA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 TDAIEADRMFSCLMGDDVEPRRAFIEENALNADID 822


>gi|260771050|ref|ZP_05879978.1| DNA gyrase subunit B [Vibrio furnissii CIP 102972]
 gi|260613939|gb|EEX39130.1| DNA gyrase subunit B [Vibrio furnissii CIP 102972]
          Length = 781

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/783 (49%), Positives = 534/783 (68%), Gaps = 11/783 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I VT++ D S +VSD+GRGIPT+LH 
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIIVTIHEDNSVSVSDDGRGIPTELHP 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G ++  +
Sbjct: 61  EEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGKVHTQT 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G+ + PL V G   + +GT V F PS++ F+  +F+Y+ L  RLRELSFLNS V I 
Sbjct: 121 YRHGVPEAPLAVVGDT-DRSGTMVRFWPSAETFTNIEFHYEILAKRLRELSFLNSGVSIK 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDG 268
           L+D+R  + ++    Y+GGI+AFV++L+R+K P+ +        R++ IS+++AM+WNDG
Sbjct: 180 LVDER-EDNKQDHFMYEGGIQAFVNHLNRNKTPIHEKVFHFNSEREDGISVEVAMQWNDG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           + E++ CFTNNIPQ+DGGTHL+G R+ALTR + +Y++K   SKK K +  GDD REG T+
Sbjct: 239 FQESIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMDKEGYSKKAKTATSGDDAREGLTA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L+ +L E+P EAKI+  K++DA+  
Sbjct: 299 VVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLNDFLAENPSEAKIVCSKIIDAARA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQ
Sbjct: 359 REAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 419 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 478

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + +GK  QY+KDEE++  Y I  ++
Sbjct: 479 DGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQIALAM 538

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--S 626
                        ++   L   +       KLI+     +  + I + +       E   
Sbjct: 539 DNAELHVNADAPALAGAPLEKLVQQYNAAIKLIERMSRRYPHSLIHEFIYMPRMTAEKCQ 598

Query: 627 DQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSS 681
           D+    +   +L ++LN     + +       +   N     +K    GV  +++L    
Sbjct: 599 DEAGAQAWTQQLIDQLNAKEVGASQYSFTLEHNAEHNVYSPRIKVRTHGVTHEYLLSVDL 658

Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           + S         S  +         +        +    + LD +    R+G+S+QRYKG
Sbjct: 659 LNSKEYGKLAELSEAMHGLIEDGAYIKRGERTQPVASFAAALDWLIKESRRGLSVQRYKG 718

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800
           LGEMN  QLWETT++P+TR +++V I DA  AD+LF+ LMGD+VEPRR FI+ N+L    
Sbjct: 719 LGEMNPDQLWETTMDPETRRMMQVTIDDAVGADELFTTLMGDQVEPRRAFIENNALKVAN 778

Query: 801 LDI 803
           LD+
Sbjct: 779 LDV 781


>gi|161723181|ref|YP_443735.2| DNA gyrase subunit B [Burkholderia thailandensis E264]
 gi|167620901|ref|ZP_02389532.1| DNA gyrase subunit B [Burkholderia thailandensis Bt4]
          Length = 822

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/826 (46%), Positives = 540/826 (65%), Gaps = 27/826 (3%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++       +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113
            GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q S
Sbjct: 61  AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161
           YKVSGGLHGVGVS VNALSSWL+L ++R+G  + M F  GI              +P+ V
Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQV 180

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G    + GTEV F+  S IF   +++YD L  R+RELSFLN+ V+I L D+RS +    
Sbjct: 181 IGDTE-NRGTEVHFMADSTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--D 237

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              + GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIP
Sbjct: 238 DFAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 297

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSS
Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSS 357

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRR
Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 417

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE
Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF
Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +RQMP +I  G++YI +PPLY +  G+  +Y+KD+  L  +++  +L     +  ++   
Sbjct: 538 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQGSELVPTENGTP 597

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS + L       L    +++     +D   +E  +     +  S +    + A  LA  
Sbjct: 598 ISGDALGELARSYLLARGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 656

Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
           L+  ++   +   ++        + V+R   G     V++     +   +     +N  +
Sbjct: 657 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 716

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
                  ++        +      +  + +   + +S QRYKGLGEMN  QLWETT++P 
Sbjct: 717 GLIGAGAAIKRGERSSNVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPA 776

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 822


>gi|114568568|ref|YP_755248.1| DNA gyrase subunit B [Maricaulis maris MCS10]
 gi|114339030|gb|ABI64310.1| DNA gyrase subunit B [Maricaulis maris MCS10]
          Length = 800

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/805 (55%), Positives = 576/805 (71%), Gaps = 9/805 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   N  Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+
Sbjct: 1   MTEQ-ANQEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              + VTL+ DGS +V D+GRGIPTD+H+EEG+SAA+VIMT+LHAGGKF+Q SYKVSGGL
Sbjct: 60  CSEVLVTLHADGSASVRDDGRGIPTDIHQEEGVSAAQVIMTQLHAGGKFDQNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS W+ L I R G  + M F  G  +  L V G A     GTEV F+PS 
Sbjct: 120 HGVGVSVVNALSDWMDLTIWRNGKRHWMRFRRGDAEEDLKVMGDAEPGQKGTEVRFMPSE 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F++ +FN +TLQHRLREL+FLNS V+I+L D+R  E    TM Y GG+ AFV++LDR+
Sbjct: 180 ETFTMTEFNRETLQHRLRELAFLNSGVKITLRDEREAELYSDTMVYDGGVAAFVAHLDRN 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+   P+ I G +D ++++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 240 KTPIFTPPVLITGEKDGVAVEAALEWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRI 299

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y   S  + K K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  
Sbjct: 300 INTYAASSGLASKAKVSISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGA 359

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ W EEHP EAK++V K+++A+  R+AAR+AR+LTRRK  L+I+SLPGKLADC E
Sbjct: 360 VGEALAEWFEEHPTEAKMVVGKIIEAAAAREAARKARELTRRKSALEISSLPGKLADCQE 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP KSELF+VEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFD+ML S+++GTLIT
Sbjct: 420 KDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDRMLGSEQVGTLIT 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D  +  KLRYHK+IIMTDADVDGAHIRTLLLTFF+RQMP LI  G+LYI +P
Sbjct: 480 ALGTGIGRDQINYEKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMPELIEKGYLYIAQP 539

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I +G+S +YVKD+  ++ YLI + +SE          V++  DL + +  A ++  
Sbjct: 540 PLYKIAKGRSERYVKDQAEMDAYLIEEGVSEAHLTLH-GGEVVTGQDLASRVAAARQVKL 598

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-- 657
            I           +E A ++G    E  +      A+    RLN  A++ E +W G +  
Sbjct: 599 SIDRMTARAPGFALEAAAMAGALVPEPSEAAVTRAAA----RLNSFADEGEDNWGGRVDG 654

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
            +  ++ +R  RGV E  VL+ S   S  +K     +  I ++Y    S +     + I 
Sbjct: 655 EDGGLVFEREVRGVMETVVLDRSLRASPDAKRLNERATAISDDYAGPASFVPKSGPVTIN 714

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
            P  L+D +   G KG+ +QRYKGLGEMN  QLWETTL+P+ RSLL+V +T A  AD+LF
Sbjct: 715 SPRELVDAVVVSGAKGMKIQRYKGLGEMNPGQLWETTLDPNARSLLQVSVTHADTADELF 774

Query: 778 SRLMGDEVEPRREFIQENSLPSALD 802
           S+LMGD VEPRR+FIQE++L + +D
Sbjct: 775 SKLMGDVVEPRRDFIQEHALEAEVD 799


>gi|13474326|ref|NP_105894.1| DNA gyrase subunit B [Mesorhizobium loti MAFF303099]
 gi|14025078|dbj|BAB51680.1| DNA gyrase subunit B [Mesorhizobium loti MAFF303099]
          Length = 823

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/825 (59%), Positives = 616/825 (74%), Gaps = 24/825 (2%)

Query: 1   MSDNIQNSS-----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD I+N++     Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSDQIENTNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD++TVTLN DGS TV DNGRGIPTD+H  EGISAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHADLVTVTLNPDGSVTVIDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-------- 167
           VSGGLHGVGVSVVNALS+WLKL+I+R G I+EMSF +G  D PL  TGS           
Sbjct: 121 VSGGLHGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLRATGSYEQDKQPGTYE 180

Query: 168 -DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             +G+ +TF PS++ F++ +F++ TL+HRLREL+FLNS V+I L D R  +     + Y 
Sbjct: 181 GRSGSSITFFPSAETFTMVEFDFGTLEHRLRELAFLNSGVRIILTDGRHADIVRHELHYD 240

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+E FV YLDR KKPL++ PI I+  RD I++++AM WND YHENVL FTNNIPQ+DGG
Sbjct: 241 GGLEEFVKYLDRVKKPLIEKPIAIKAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGG 300

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R ALTRQIT Y E S  +KK+K S+IGDDCREG T+VLS+K+PDP+FSSQTK+K
Sbjct: 301 THLAGFRGALTRQITGYGESSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQTKDK 360

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR VVE  VN+ L  WLEEHP E K+++ KV+ A+  R+AAR+ARD+T RK  L 
Sbjct: 361 LVSSEVRPVVEGLVNEALGTWLEEHPTEGKVVIDKVIQAAAAREAARKARDIT-RKSSLG 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           + SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD
Sbjct: 420 VTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           +ML S  IGTLITALGT IG+D F+ +KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP
Sbjct: 480 RMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMP 539

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G LYI +PPLY +TRGKS QY+K+E + E++LI   L E       S  V +  D
Sbjct: 540 ELIERGHLYIAQPPLYKVTRGKSSQYIKNESAFEEFLIESGLEEASL-TLGSGEVRTGQD 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNF 644
           LR  +DDAL + +LI   +  +++  +EQA I+G  N E   ++    ++A ++A RL+ 
Sbjct: 599 LRGAVDDALAVRQLINGLHTRYNRGVVEQASIAGGLNPEVFSDLGRANAMAERIAQRLDI 658

Query: 645 IAEKSEKSWHG-----SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
           IAE +E+ W G     +  +   + +R  R V+E   L+   I S  ++    ++ R+ E
Sbjct: 659 IAEDTERGWTGRMSTSNDGSGGYVFERTVRSVKEYAHLDMGLINSADARQLDRYAQRLSE 718

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
            Y T   L        ++GP +LL+ +F+ GRKG++MQRYKGLGEMNA QLWETTL+P+ 
Sbjct: 719 VYGTPPVLRRKDVSETVSGPLALLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNV 778

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           RSLL+VK+ DA+ AD LFSRLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 779 RSLLQVKVNDATDADSLFSRLMGDEVEPRREFIQDNALSVANLDI 823


>gi|53717712|ref|YP_106698.1| DNA gyrase subunit B [Burkholderia pseudomallei K96243]
 gi|53724903|ref|YP_101864.1| DNA gyrase subunit B [Burkholderia mallei ATCC 23344]
 gi|67642369|ref|ZP_00441126.1| DNA gyrase, B subunit [Burkholderia mallei GB8 horse 4]
 gi|76808573|ref|YP_331715.1| DNA gyrase subunit B [Burkholderia pseudomallei 1710b]
 gi|121600538|ref|YP_994144.1| DNA gyrase subunit B [Burkholderia mallei SAVP1]
 gi|124384090|ref|YP_001028199.1| DNA gyrase subunit B [Burkholderia mallei NCTC 10229]
 gi|126439588|ref|YP_001057142.1| DNA gyrase subunit B [Burkholderia pseudomallei 668]
 gi|126451013|ref|YP_001079586.1| DNA gyrase subunit B [Burkholderia mallei NCTC 10247]
 gi|126452573|ref|YP_001064386.1| DNA gyrase subunit B [Burkholderia pseudomallei 1106a]
 gi|134281651|ref|ZP_01768359.1| DNA gyrase, B subunit [Burkholderia pseudomallei 305]
 gi|167001182|ref|ZP_02266981.1| DNA gyrase, B subunit [Burkholderia mallei PRL-20]
 gi|167717460|ref|ZP_02400696.1| DNA gyrase subunit B [Burkholderia pseudomallei DM98]
 gi|167736495|ref|ZP_02409269.1| DNA gyrase subunit B [Burkholderia pseudomallei 14]
 gi|167813573|ref|ZP_02445253.1| DNA gyrase subunit B [Burkholderia pseudomallei 91]
 gi|167843719|ref|ZP_02469227.1| DNA gyrase subunit B [Burkholderia pseudomallei B7210]
 gi|167892198|ref|ZP_02479600.1| DNA gyrase subunit B [Burkholderia pseudomallei 7894]
 gi|167900710|ref|ZP_02487915.1| DNA gyrase subunit B [Burkholderia pseudomallei NCTC 13177]
 gi|167908927|ref|ZP_02496018.1| DNA gyrase subunit B [Burkholderia pseudomallei 112]
 gi|167916968|ref|ZP_02504059.1| DNA gyrase subunit B [Burkholderia pseudomallei BCC215]
 gi|217424084|ref|ZP_03455584.1| DNA gyrase, B subunit [Burkholderia pseudomallei 576]
 gi|237814478|ref|YP_002898929.1| DNA gyrase, B subunit [Burkholderia pseudomallei MSHR346]
 gi|242315971|ref|ZP_04814987.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106b]
 gi|254174704|ref|ZP_04881365.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 10399]
 gi|254184146|ref|ZP_04890737.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1655]
 gi|254186617|ref|ZP_04893134.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|254194736|ref|ZP_04901167.1| DNA gyrase, B subunit [Burkholderia pseudomallei S13]
 gi|254201969|ref|ZP_04908333.1| DNA gyrase, B subunit [Burkholderia mallei FMH]
 gi|254207301|ref|ZP_04913652.1| DNA gyrase, B subunit [Burkholderia mallei JHU]
 gi|254262120|ref|ZP_04953174.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710a]
 gi|254298588|ref|ZP_04966039.1| DNA gyrase, B subunit [Burkholderia pseudomallei 406e]
 gi|254359610|ref|ZP_04975881.1| DNA gyrase, B subunit [Burkholderia mallei 2002721280]
 gi|52208126|emb|CAH34056.1| DNA gyrase subunit B [Burkholderia pseudomallei K96243]
 gi|52428326|gb|AAU48919.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 23344]
 gi|76578026|gb|ABA47501.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710b]
 gi|121229348|gb|ABM51866.1| DNA gyrase, B subunit [Burkholderia mallei SAVP1]
 gi|124292110|gb|ABN01379.1| DNA gyrase, B subunit [Burkholderia mallei NCTC 10229]
 gi|126219081|gb|ABN82587.1| DNA gyrase, B subunit [Burkholderia pseudomallei 668]
 gi|126226215|gb|ABN89755.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106a]
 gi|126243883|gb|ABO06976.1| DNA gyrase, B subunit [Burkholderia mallei NCTC 10247]
 gi|134247318|gb|EBA47404.1| DNA gyrase, B subunit [Burkholderia pseudomallei 305]
 gi|147747863|gb|EDK54939.1| DNA gyrase, B subunit [Burkholderia mallei FMH]
 gi|147752843|gb|EDK59909.1| DNA gyrase, B subunit [Burkholderia mallei JHU]
 gi|148028824|gb|EDK86756.1| DNA gyrase, B subunit [Burkholderia mallei 2002721280]
 gi|157808695|gb|EDO85865.1| DNA gyrase, B subunit [Burkholderia pseudomallei 406e]
 gi|157934302|gb|EDO89972.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|160695749|gb|EDP85719.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 10399]
 gi|169651486|gb|EDS84179.1| DNA gyrase, B subunit [Burkholderia pseudomallei S13]
 gi|184214678|gb|EDU11721.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1655]
 gi|217393147|gb|EEC33169.1| DNA gyrase, B subunit [Burkholderia pseudomallei 576]
 gi|237505877|gb|ACQ98195.1| DNA gyrase, B subunit [Burkholderia pseudomallei MSHR346]
 gi|238523508|gb|EEP86946.1| DNA gyrase, B subunit [Burkholderia mallei GB8 horse 4]
 gi|242139210|gb|EES25612.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106b]
 gi|243063009|gb|EES45195.1| DNA gyrase, B subunit [Burkholderia mallei PRL-20]
 gi|254220809|gb|EET10193.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710a]
          Length = 822

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/826 (46%), Positives = 540/826 (65%), Gaps = 27/826 (3%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++       +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113
            GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q S
Sbjct: 61  AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161
           YKVSGGLHGVGVS VNALSSWL+L ++R+G  + M F  GI              +P+ V
Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLIVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQV 180

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +    
Sbjct: 181 IGETE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDLRSGKE--D 237

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              + GG++ FV Y+++ K  L  +   I G +D++ +++AM+WND Y+ENVLCFTNNIP
Sbjct: 238 DFAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDSVGVEVAMQWNDSYNENVLCFTNNIP 297

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSS
Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSS 357

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRR
Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 417

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE
Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF
Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +RQMP +I  G++YI +PPLY +  G+  +Y+KD+  L  +++  +L     +  ++   
Sbjct: 538 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQGSELVPTENGTP 597

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS + L       L    +++     +D   +E  +     +  S +    + A  LA  
Sbjct: 598 ISGDALGELARSYLLARGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 656

Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
           L+  ++   +   ++        + V+R   G     V++     +   +     +N  +
Sbjct: 657 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 716

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
                  ++        +T     +  + +   + +S QRYKGLGEMN  QLWETT++P 
Sbjct: 717 GLIGAGAAIKRGERSSNVTDFKEAMKWLMADAERNLSKQRYKGLGEMNPEQLWETTMDPA 776

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 822


>gi|126668219|ref|ZP_01739180.1| DNA gyrase subunit B [Marinobacter sp. ELB17]
 gi|126627368|gb|EAZ98004.1| DNA gyrase subunit B [Marinobacter sp. ELB17]
          Length = 804

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/807 (48%), Positives = 528/807 (65%), Gaps = 11/807 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S+Y++ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++E++DN+IDE+L G+   I
Sbjct: 1   MSESAYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCTEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + ++ D S +V DNGRGIP DLH+ EGISAAEVIMT LHAGGKF+  +YKVSGGLHGVG
Sbjct: 61  GIRIHPDESVSVHDNGRGIPVDLHEGEGISAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALSS L L I+R G +YE ++ +G+   PL   GS  + +GT+V F+PS   F+ 
Sbjct: 121 VSVVNALSSVLTLTIRRSGKVYEQTYNHGVPAAPLHEVGST-DASGTKVHFIPSEATFTN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y+ L  R+REL+FLNS V+I L D+RS +       Y+GG+ AFV +L+ +K P+ 
Sbjct: 180 IKFHYEILAKRVRELAFLNSGVRIRLTDERSGKE--ELFEYEGGLRAFVEHLNTNKTPIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +     Q   D I +++AM+WND + EN+ CFTNNIPQ+DGGTHL G R+ALTR + SY+
Sbjct: 238 RVFYFTQQREDGIEVEVAMQWNDAFQENIYCFTNNIPQRDGGTHLVGFRTALTRSLNSYI 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 298 EHEGLGKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +A+L+E P EA++IV K+++A+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 358 AAYLQEQPSEARLIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPAL 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGR R NQAILPL+GKILNVE+ARFDKMLSS E+G LITALG G
Sbjct: 418 SELFIVEGDSAGGSAKQGRERRNQAILPLKGKILNVEKARFDKMLSSAEVGNLITALGCG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ F++ KLRYH IIIMTDADVDG+HIRTLLLTF FRQM  +I  G ++I  PPLY +
Sbjct: 478 IGREEFNVEKLRYHSIIIMTDADVDGSHIRTLLLTFLFRQMREVIERGHVFIAMPPLYKV 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RGK  QY+KDE + E YL   +L             I  + L   + D   +  +I   
Sbjct: 538 KRGKQEQYLKDENARESYLTQTALEGAQLFVNADAPAIKDSALETMVKDYQAVMAMIDRL 597

Query: 605 YPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSI 657
              +    + Q + +     E   D+    S   +L N L        K           
Sbjct: 598 SRAYPSKVLAQMLHNNTLTSEQLKDESAVASWVGRLGNNLELDTRTGTKYVFSVHHDTER 657

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
           +    +V     G+  + V   +   +   K        ++        +     K  + 
Sbjct: 658 DLYLPMVTVHLHGMAHEHVFSHTFFEAPSYKAIARLGETLDALVEEGAYVQRGERKQAVL 717

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +    ++G+++QRYKGLGEMN  QLWETT++P++R +++V I DA  AD +F
Sbjct: 718 SFEGALAWLMKEAQRGLTLQRYKGLGEMNPEQLWETTMDPESRRMMKVTIADAFAADQMF 777

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMGD+VEPRR FIQ ++L    LDI
Sbjct: 778 TTLMGDDVEPRRNFIQTHALEVTNLDI 804


>gi|167822114|ref|ZP_02453585.1| DNA gyrase subunit B [Burkholderia pseudomallei 9]
 gi|226193304|ref|ZP_03788914.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pakistan 9]
 gi|225934904|gb|EEH30881.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pakistan 9]
          Length = 822

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/826 (46%), Positives = 541/826 (65%), Gaps = 27/826 (3%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++       +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113
            GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q S
Sbjct: 61  AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161
           YKVSGGLHGVGVS VNALSSWL+L ++R+G  + M F  GI              +P+ V
Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLIVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQV 180

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +    
Sbjct: 181 IGETE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDLRSGKE--D 237

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              + GG++ FV Y+++ K  L  +   I G +D++ +++AM+WND Y+ENVLCFTNNIP
Sbjct: 238 DFAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDSVGVEVAMQWNDSYNENVLCFTNNIP 297

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSS
Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSS 357

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRR
Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 417

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE
Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF
Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +RQMP +I +G++YI +PPLY +  G+  +Y+KD+  L  +++  +L     +  ++   
Sbjct: 538 YRQMPEMIEHGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQGSELVPTENGTP 597

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS + L       L    +++     +D   +E  +     +  S +    + A  LA  
Sbjct: 598 ISGDALGELARSYLLARGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 656

Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
           L+  ++   +   ++        + V+R   G     V++     +   +     +N  +
Sbjct: 657 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 716

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
                  ++        +T     +  + +   + +S QRYKGLGEMN  QLWETT++P 
Sbjct: 717 GLIGAGAAIKRGERSSNVTDFKEAMKWLMADAERNLSKQRYKGLGEMNPEQLWETTMDPA 776

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 822


>gi|302381122|ref|YP_003816945.1| DNA gyrase subunit beta [Brevundimonas subvibrioides ATCC 15264]
 gi|302191750|gb|ADK99321.1| DNA gyrase, B subunit [Brevundimonas subvibrioides ATCC 15264]
          Length = 815

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/809 (56%), Positives = 580/809 (71%), Gaps = 11/809 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +DN + ++Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 11  ADNAEEAAYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D++ V LN DGS TV+DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 71  DLVEVILNADGSVTVTDNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND------TGTEVTF 175
           GVGVSVVNALS WLKL I R G  +EM F  G     L VTG A         +GT+VTF
Sbjct: 131 GVGVSVVNALSDWLKLVIFRNGQRHEMKFERGDTVESLRVTGEAPMRENGKVLSGTQVTF 190

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS   F+  DF+  TL+HRLREL+FLNS V I L D R  EP E  + Y+GG+EAFV +
Sbjct: 191 YPSVTTFAHIDFDLKTLEHRLRELAFLNSGVVIKLQDHRGVEPFEEILHYEGGVEAFVRH 250

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD+ K P+++  I I+G RDNI IDLA+ WND YHE +LCFTNNIPQ+DGGTHLS  R++
Sbjct: 251 LDKSKTPILKDVIVIRGKRDNIEIDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRTS 310

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT+ + +Y+E S   KK+K +  G+D REG T VLS+K+PDP+FSSQTK+KLVSSEVR  
Sbjct: 311 LTKVMGAYMESSGALKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPA 370

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE    DGL+ W EEHP+EAK +V K+++A+  R+AAR+ARDLTRRK  LDI+SLPGKLA
Sbjct: 371 VEGLCTDGLNQWFEEHPVEAKAVVAKIIEAASAREAARKARDLTRRKSALDISSLPGKLA 430

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERARFD+MLSS+ IG
Sbjct: 431 DCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLSSELIG 490

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLI ALGTGIG+D F+ +KLRYHKII+M DADVDGAHIRTLLLTFF+RQMP LI  G ++
Sbjct: 491 TLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYRQMPELIERGHVF 550

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY +++GK  +Y+KD+  ++ YLI +  S+            + +DL+  + DA 
Sbjct: 551 IAQPPLYKVSKGKQSRYLKDQSEMDSYLIEEGSSDAELDMAT-GERRTGHDLQALVRDAK 609

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
                +           IEQ  ++G+F  E+   +  S AS  A RLN  AE+ +  W G
Sbjct: 610 AFKAQVDRLSQRAPAFAIEQGALAGLF-AENADPVGASAAS--AERLNLYAEEGDGVWSG 666

Query: 656 SINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
           S      I+  R  R VQE  VLE + I S   +     +   E  +    +       I
Sbjct: 667 SPGEQGAIVFGRSRRAVQETIVLEEALIRSLDGRRLAERAAAFEGLFDAPATYRRKDRSI 726

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            I GP  LL+ +   G+KG+++QRYKGLGEMN  QLWETTL+ + R+LLRV++  A  AD
Sbjct: 727 TIRGPIDLLNAVLDQGKKGLAIQRYKGLGEMNPEQLWETTLDANARTLLRVQVDHADDAD 786

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803
           DLF++LMGD VEPRREFIQ+N+L +A+D+
Sbjct: 787 DLFAKLMGDVVEPRREFIQDNALDAAVDV 815


>gi|258546265|ref|ZP_05706499.1| DNA gyrase subunit B [Cardiobacterium hominis ATCC 15826]
 gi|258518531|gb|EEV87390.1| DNA gyrase subunit B [Cardiobacterium hominis ATCC 15826]
          Length = 800

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/807 (49%), Positives = 551/807 (68%), Gaps = 11/807 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN   +SYD+  I++LKGL+AV+ RP MYIG+TD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSDN---NSYDSSRIRVLKGLEAVRIRPGMYIGNTDDGSGLHHMVFEVVDNAIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV DNGRGIP D+H EEG SAAEVIMT LHAGGKF+  +YKVSGGL
Sbjct: 58  CTEINVIIHQDESITVRDNGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L + IKR+G+I++ ++ +G    PL + G + + TGTE+ FL SSD
Sbjct: 118 HGVGVSVVNALSERLTMTIKRDGHIHQQTYRHGEPQAPLAIIGDS-DSTGTEINFLASSD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    ++YDTL  RLRELSFLN+ V+I L D+RS + +     Y+GG++AFV Y +R+K
Sbjct: 177 TFGTVIYDYDTLAQRLRELSFLNAGVRIELRDERSDKNQI--FQYEGGVKAFVEYQNRNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+  S       +D +++++A++WND Y ENV CFTNNIPQ+DGGTHL+G R+A+TR +
Sbjct: 235 TPIHPSIFYCAADKDGVAVEIALQWNDSYAENVYCFTNNIPQRDGGTHLAGFRAAMTRTL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+    KK K +  GDD REG T+++S+K+ DP+FSSQTK+KLVSSEV+S VE+ +
Sbjct: 295 NAYMEEEGLLKKAKIATSGDDSREGLTAIVSVKVHDPKFSSQTKDKLVSSEVKSAVENVL 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L  +L EHP EAK I  K++DA+  R+AAR+AR++TRRK  LDIA LPGKLADC E+
Sbjct: 355 ADKLKEYLLEHPGEAKTIAGKIVDAARAREAARKAREMTRRKDALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+F+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML S EIGTLITA
Sbjct: 415 DPAHSEIFIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLGSAEIGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D FD  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PP
Sbjct: 475 LGTGIGKDDFDAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY +T+G++ QY+KD+  L + L+ Q+L +           I+K        +  +I+ L
Sbjct: 535 LYKVTKGRNKQYLKDDHELNELLLTQALDDANLHLAADAPAITKEAFEALAREHGQIENL 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSE--KSWHGS 656
           IK  +  +D   +   + +      +  +        +    +L+  AE     ++    
Sbjct: 595 IKRLH-RYDSRVLHALIEAPELTHATFADAHALQEWLAAYQRQLDRFAEAGIALRAEILP 653

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
              + I V+        Q   + +   S   ++   F  ++            + +++++
Sbjct: 654 GEVARINVRIEQHANLSQNTFDPNFADSNEYRHINTFGKKVRGLLGDGAYFQNSKERLEV 713

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                +++ + + G+K   +QRYKGLGEMN  QLWETTL+P  R +L+V++ DA  AD++
Sbjct: 714 EHFHQVINALLAEGKKAYDIQRYKGLGEMNPEQLWETTLDPAVRRMLQVQLKDARLADEI 773

Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803
           F+ LMG+EVEPRR FI++N+  + +DI
Sbjct: 774 FTTLMGEEVEPRRAFIEDNANSANIDI 800


>gi|262281565|ref|ZP_06059344.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
 gi|262257024|gb|EEY75763.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
          Length = 822

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/814 (49%), Positives = 538/814 (66%), Gaps = 16/814 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++     +YD+ SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ 
Sbjct: 11  TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 71  DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L L I R G ++E  + +G    PL V G   + +GT V F PS   
Sbjct: 131 GVGVSVVNALSSKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSGTTVRFWPSELT 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 190 FTQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKT 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L +       +   I +++A++WN+ Y ENV CFTNNIPQKDGG+HL+G R+ALTR + 
Sbjct: 248 HLNEIFHFTADTDSGIGVEVALQWNESYQENVRCFTNNIPQKDGGSHLAGFRAALTRGLN 307

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL
Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+  G++YI +PPL
Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGYIYIAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD ++LE+YLI+ ++ E           I+   L   I D     K +
Sbjct: 548 YKLKKGKQEQYIKDNDALENYLISNAIDELSLHTNAEAPSITGEALAKVIQDYQVSQKSL 607

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFI-----------AEK 648
           +     +  + ++  +    F  + + +       A ++ + +  +           + +
Sbjct: 608 QRLTLRYPASLLDALLEIEAFKSDQNHDEAYVQQWADQVKDIITRLQPSLRPEITLESFE 667

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E +      +    +      +   ++L+   + S         S            L 
Sbjct: 668 RENAQGEKSAHYWPRITVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFSLLEDGAYLQ 727

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I++     +   I    R+G+ +QRYKGLGEMNA QLWETT++P+ R +L+V I 
Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRHMLQVTID 787

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA +AD +FS LMGD+VEPRR FI+EN+L + +D
Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821


>gi|218665824|ref|YP_002424518.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518037|gb|ACK78623.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 800

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/801 (50%), Positives = 536/801 (66%), Gaps = 8/801 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +YD+ SIQ+LKGL+AV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY D I VT
Sbjct: 3   ETYDSSSIQVLKGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALGGYCDTIIVT 62

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S ++SDNGRGIP D+H  EG SAAEVIMT LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 63  IHEDESVSISDNGRGIPVDMHAGEGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVGVSV 122

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  L+LRI R+G ++   + +G    P+   G A    G+ + F PS  +F+   F
Sbjct: 123 VNALSETLQLRIFRDGYVWTQEYHDGEPQAPIAR-GDASRKHGSTIRFKPSPQVFADTHF 181

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +++ +  RLREL+FLNS V I+L+D+R+   RE T  Y+GGI AFV +L+R K  +  S 
Sbjct: 182 HFEIIAKRLRELAFLNSGVHITLLDERA--SREETFHYEGGIRAFVEHLNRSKTAIHPSV 239

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I + G RD I ++ A++WN+GY+E VLCFTNNIPQ DGGTHL+G R ALTR +  Y+E+ 
Sbjct: 240 ITLTGERDGIVVEAALQWNEGYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYMERE 299

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
               K K +V G+D REG T+VLS+K+PDP+FSSQTKEKLVSSEV+ +VES +++ L+ +
Sbjct: 300 GIIAKAKVAVSGEDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTMF 359

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L+EHP EA+ I  K+++A+  R+AARRAR+LTRRKG LDIA+LPGKLADC E+DP + E+
Sbjct: 360 LDEHPKEAQAIAAKIVEAARAREAARRARELTRRKGALDIANLPGKLADCQEKDPAQCEI 419

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           +LVEGDSAGGSAKQGR R +QAILPL+GKILNVERARFD+MLSS EIGTLITALGTGIG 
Sbjct: 420 YLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDRMLSSDEIGTLITALGTGIGA 479

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
             FD+ KLRYH++IIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI +PPLY + +G
Sbjct: 480 GDFDVAKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPDLVARGHIYIAQPPLYKVKKG 539

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K  +Y+KD+  L  YL   ++             ++   L   +     I+ L++     
Sbjct: 540 KEERYLKDDGELAAYLREIAMQGAQFRPAADAEPVTDEQLGGMMRQYQNIEALVQRLERR 599

Query: 608 HDKTFIEQAVISGVFNCESDQEIN-VSLASKLANRLNFIAEKSEK---SWHGSINNSDIL 663
           +  T +           ES         A +L   L   A  +E       G      ++
Sbjct: 600 YPSTLLWALATLPPIVAESADSATWDDFARQLRAALEVNALPAEHYTVERVGEAEALRLV 659

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V+R   G  E    +         ++   ++ +IE        +      + ++   + +
Sbjct: 660 VRREHHGSVELRFFDQDFFAGGEYRHLADYARQIEGKIGVGARMERGERGLAVSRFRTAM 719

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D + +  R+G+ +QRYKGLGEMN  QLWETT+N   R L+RV + DA  AD++FS LMGD
Sbjct: 720 DWLLADARRGVEIQRYKGLGEMNPEQLWETTMNAANRRLVRVDVEDAIAADEVFSMLMGD 779

Query: 784 EVEPRREFIQENSLPS-ALDI 803
            VEPRR FI+EN+     LDI
Sbjct: 780 AVEPRRRFIEENARFVSRLDI 800


>gi|198282152|ref|YP_002218473.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198246673|gb|ACH82266.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 801

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/804 (50%), Positives = 537/804 (66%), Gaps = 8/804 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD+ SIQ+LKGL+AV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY D I
Sbjct: 1   MMMETYDSSSIQVLKGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALGGYCDTI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S ++SDNGRGIP D+H  EG SAAEVIMT LHAGGKF+  +YKVSGGLHGVG
Sbjct: 61  IVTIHEDESVSISDNGRGIPVDMHAGEGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+LRI R+G ++   + +G    P+   G A    G+ + F PS  +F+ 
Sbjct: 121 VSVVNALSETLQLRIFRDGYVWTQEYHDGEPQAPIAR-GDASRKHGSTIRFKPSPQVFAD 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+++ +  RLREL+FLNS V I+L+D+R+   RE T  Y+GGI AFV +L+R K  + 
Sbjct: 180 THFHFEIIAKRLRELAFLNSGVHITLLDERA--SREETFHYEGGIRAFVEHLNRSKTAIH 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            S I + G RD I ++ A++WN+GY+E VLCFTNNIPQ DGGTHL+G R ALTR +  Y+
Sbjct: 238 PSVITLTGERDGIVVEAALQWNEGYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYM 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+     K K +V G+D REG T+VLS+K+PDP+FSSQTKEKLVSSEV+ +VES +++ L
Sbjct: 298 EREGIIAKAKVAVSGEDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEAL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L+EHP EA+ I  K+++A+  R+AARRAR+LTRRKG LDIA+LPGKLADC E+DP +
Sbjct: 358 TMFLDEHPKEAQAIAAKIVEAARAREAARRARELTRRKGALDIANLPGKLADCQEKDPAQ 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E++LVEGDSAGGSAKQGR R +QAILPL+GKILNVERARFD+MLSS EIGTLITALGTG
Sbjct: 418 CEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDRMLSSDEIGTLITALGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG   FD+ KLRYH++IIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI +PPLY +
Sbjct: 478 IGAGDFDVAKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPDLVARGHIYIAQPPLYKV 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK  +Y+KD+  L  YL   ++             ++   L   +     I+ L++  
Sbjct: 538 KKGKEERYLKDDGELAAYLREIAMQGAQFRPAADAEPVTDEQLGGMMRQYQNIEALVQRL 597

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEIN-VSLASKLANRLNFIAEKSEK---SWHGSINNS 660
              +  T +           ES         A +L   L   A  +E       G     
Sbjct: 598 ERRYPSTLLWALATLPPIVAESADSATWDDFARQLRAALEVNALPAEHYTVERVGEAEAL 657

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            ++V+R   G  E    +         ++   ++ +IE        +      + ++   
Sbjct: 658 RLVVRREHHGSVELRFFDQDFFAGGEYRHLADYARQIEGKIGVGARMERGERGLAVSRFR 717

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + +D + +  R+G+ +QRYKGLGEMN  QLWETT+N   R L+RV + DA  AD++FS L
Sbjct: 718 TAMDWLLADARRGVEIQRYKGLGEMNPEQLWETTMNAANRRLVRVDVEDAIAADEVFSML 777

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD VEPRR FI+EN+     LDI
Sbjct: 778 MGDAVEPRRRFIEENARFVSRLDI 801


>gi|27375934|ref|NP_767463.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110]
 gi|27349072|dbj|BAC46088.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 811

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/804 (56%), Positives = 585/804 (72%), Gaps = 8/804 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +    S Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A 
Sbjct: 13  EPSNPSDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 72

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHG
Sbjct: 73  RVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHG 132

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALSS L LRI R+   + + F +G    PLVV G A    GTEVTFL S D F
Sbjct: 133 VGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPGKRGTEVTFLASPDTF 192

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              ++++ TL+HRLREL+FLNS V I+L D R    +   M Y GG+E FV YLDR+KK 
Sbjct: 193 KNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREEMHYSGGVEEFVKYLDRNKKA 252

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+  
Sbjct: 253 IVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNG 312

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+
Sbjct: 313 YAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNE 370

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L AW EEHP EAK+IV KV+ A+  R+AAR+AR+LT RK  L ++SLPGKLADC E+DP
Sbjct: 371 ALQAWFEEHPSEAKMIVGKVIQAAAAREAARKARELT-RKSPLSVSSLPGKLADCQEKDP 429

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVER R DKML S++IGTLITALG
Sbjct: 430 AKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERVRPDKMLGSEQIGTLITALG 489

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGI  D F I KLRYHKII+MTDADVDGAHIRTLLLTFF+RQM  +I  G+LYI +PPLY
Sbjct: 490 TGI-SDEFSIEKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQMRDIIDGGYLYIAQPPLY 548

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            ++RGKS QY+KDE +LEDYLI   L + I          S  DLR  IDDA  +  +++
Sbjct: 549 KVSRGKSEQYLKDERALEDYLIETGLDDCIFTPGTGGD-RSGRDLRGLIDDARVVRSILR 607

Query: 603 DFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWHGS-INN 659
           + +  +++  +EQA I+GV N +     +   + A  +A RL+  AE  E+ W G  +  
Sbjct: 608 NLHTRYNRKVVEQAAITGVLNKDIYGDPDKAAAAAQYVAGRLDKQAEDVERGWVGHYVEG 667

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
                +R  RGV++  +++ + + S  ++    F+ ++++ Y    +L     +  + GP
Sbjct: 668 QGFQFERTVRGVKDVAIIDSAFLGSAEARKLDEFTPKLQDVYARPGNLRRKDVEHTVHGP 727

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             L + +   GRKG+++QRYKGLGEMN  QLWETTL+ + RSLL+VK+ +  +ADD+F++
Sbjct: 728 VDLFEAVTDAGRKGVTLQRYKGLGEMNPEQLWETTLDTNARSLLQVKVKEVDEADDIFTK 787

Query: 780 LMGDEVEPRREFIQENSLPSALDI 803
           LMGD VEPRR+FIQE+SL + +DI
Sbjct: 788 LMGDVVEPRRDFIQEHSLSATIDI 811


>gi|172059070|ref|YP_001806722.1| DNA gyrase subunit B [Burkholderia ambifaria MC40-6]
 gi|171991587|gb|ACB62506.1| DNA gyrase, B subunit [Burkholderia ambifaria MC40-6]
          Length = 824

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/828 (47%), Positives = 539/828 (65%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P++
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPML 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAA 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I+     +D   +E  +     +  S++    + A  L  
Sbjct: 598 AISGDALGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+  A K+E      +        + ++R   G     V++     +   +     +N 
Sbjct: 657 ALHDDALKNEVRVVPSYDPVREQRSLHIERTHHGNVRVSVIDQEFQHTADYQQLVATANT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
                     +      + ++   S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FTGLIGEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824


>gi|319780074|ref|YP_004139550.1| DNA gyrase, subunit beta [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317165962|gb|ADV09500.1| DNA gyrase, B subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 823

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/825 (59%), Positives = 613/825 (74%), Gaps = 24/825 (2%)

Query: 1   MSDNIQNSS-----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD I N++     Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MSDQIDNNNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD++TVTLN DGS TV DNGRGIPTD+H  EGISAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHADLVTVTLNPDGSVTVIDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-------- 167
           VSGGLHGVGVSVVNALS+WLKL+I+R G I+EMSF +G  D PL  TG+           
Sbjct: 121 VSGGLHGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKATGTYEQDKQPGTYE 180

Query: 168 -DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             +G+++TF PS++ F++ +F++ TL+HRLREL+FLNS V+I L D R  +     + Y 
Sbjct: 181 GRSGSQITFFPSAETFTMVEFDFGTLEHRLRELAFLNSGVRIILTDARHADVVRHELHYD 240

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+E FV YLDR KKPL+  PI I+  RD I++++AM WND YHENVL FTNNIPQ+DGG
Sbjct: 241 GGLEEFVKYLDRVKKPLIDKPIAIRAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGG 300

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R ALTRQIT Y E S  +KK+K S+IGDDCREG T+VLS+K+PDP+FSSQTK+K
Sbjct: 301 THLAGFRGALTRQITGYGESSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQTKDK 360

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR VVE  VN+ L  WLEEHP E K++V KV+ A+  R+AAR+ARD+T RK  L 
Sbjct: 361 LVSSEVRPVVEGLVNEALGTWLEEHPSEGKVVVDKVIQAAAAREAARKARDIT-RKSSLG 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           + SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD
Sbjct: 420 VTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           +ML S  IGTLITALGT IG+D F+ +KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP
Sbjct: 480 RMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMP 539

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G LYI +PPLY +TRGKS QY+KDE + E++LI   L E       S  V    D
Sbjct: 540 ELIERGHLYIAQPPLYKVTRGKSSQYIKDESAFEEFLIGSGLEEASL-TLGSGEVRIGQD 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNF 644
           LR  IDDAL + +LI   +  +++  +EQA I+G  N +   ++     +A ++A RL+ 
Sbjct: 599 LRGAIDDALAVRQLINGLHTRYNRGVVEQAAIAGGLNPDVFADLGRANDMAERIAKRLDI 658

Query: 645 IAEKSEKSWHG-----SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
           IAE +E+ W G     +      + +R  R V+E   L+ + I S  ++    ++ R+ E
Sbjct: 659 IAEDTERGWTGRMSTSNEGVGGYVFERTVRSVKEYAHLDLALINSADARQLDRYAQRLSE 718

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
            Y +   L        I+GP ++L+ +F+ GRKG++MQRYKGLGEMNA QLWETTL+P+ 
Sbjct: 719 VYGSPPVLRRKDVSETISGPLAMLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNV 778

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           RSLL+VK+ DA+ AD LFSRLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 779 RSLLQVKVNDATDADSLFSRLMGDEVEPRREFIQDNALSVANLDI 823


>gi|241762428|ref|ZP_04760506.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753854|ref|YP_003226747.1| DNA gyrase subunit beta [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|241373022|gb|EER62680.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258553217|gb|ACV76163.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 812

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/816 (52%), Positives = 576/816 (70%), Gaps = 17/816 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ + Q+  YDA SI++L+GLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+L GY
Sbjct: 1   MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS----YKV 116
            D++ + +  DGS +V DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF+  +    YKV
Sbjct: 61  CDLVKIAIYDDGSVSVEDNGRGIPTGIHPEEGVSAAEVIMTQLHAGGKFDNNANSNAYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS +L+L + R+G  + M F +G+   PL V G A +  GT V F 
Sbjct: 121 SGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRFH 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F + +FN++ L+HR REL+FLNS V++ L DKR+   + + +FY+GGI AFV +L
Sbjct: 180 PSAETFKITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVELFYEGGIAAFVKWL 239

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR K  L+  P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+  R+AL
Sbjct: 240 DRAKTALIPEPVAIHGDRDDVMIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAFRAAL 299

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y +KS   KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR  +
Sbjct: 300 TRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPL 359

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES + D ++ WLEE+P  AK+I++K++DA+  R+AA+RAR+LTRRKGV+DIASLPGKLAD
Sbjct: 360 ESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLAD 419

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP KSE+F+VEGDSAGGSAKQGR+R NQAILPL+GKILN ER+R D+MLSS+E+GT
Sbjct: 420 CQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEVGT 479

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI ALGTGI +D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+R MP +I NG LYI
Sbjct: 480 LIQALGTGI-RDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPEIIENGHLYI 538

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPL+ + + +S  Y+KDE +L++YL++  ++  +    +     S NDL   ++ A +
Sbjct: 539 AQPPLFKVAKNRSEVYLKDEAALDNYLMDAGVASMMLHTDNGDR--SGNDLHQMVEHARR 596

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
              L+      +    IE A ++G F  +   E    +  ++A  L     +S+  W   
Sbjct: 597 TRLLMNYVPNRYYAPLIETAALAGAFQSDIADEKRQDILKQVAEILTRSDSESDARWSVE 656

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT--ILSLIC----- 709
                 L +R+ RGV +   L+ + I S  +      +    E+Y++     L+      
Sbjct: 657 FIPEGFLFRRLWRGVTDAHTLDWNFIQSSEAAKLHQLAQEQAESYISAHPARLVTLAAQM 716

Query: 710 -NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  I  P  L + I ++G KG+S+ RYKGLGEMN  QLWETTL+P  RS+L+V++ 
Sbjct: 717 DEEAGQDIYRPSQLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVE 776

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            A  AD++FSRLMGD VEPRR+FIQ+N+L    LD+
Sbjct: 777 QADVADEIFSRLMGDVVEPRRDFIQQNALSVANLDV 812


>gi|330814959|ref|YP_004358664.1| DNA gyrase, B subunit [Burkholderia gladioli BSR3]
 gi|327367352|gb|AEA58708.1| DNA gyrase, B subunit [Burkholderia gladioli BSR3]
          Length = 825

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/828 (46%), Positives = 533/828 (64%), Gaps = 28/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MTEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +++DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISITDNGRGIPTDVKMDDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L +KR G  + M F  G+              +P+ 
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMA 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +   
Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPL+ I  GK  +Y+KDE  L  +++  +L            
Sbjct: 538 LYRQMPEMIERGYVYIAQPPLFKIKAGKDERYLKDESELNAHMLRLALQGSELQPGSGAD 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS   L       L    ++      +D   +E  +     +   +     S ++  A 
Sbjct: 598 AISGEALGALARSYLLSRAVVGRLGRLYDPAALEAVMDGVAIDLAGEDAALKSASALQAA 657

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L   A K+E      +     +  + ++R   G     V++   + +   K     ++ 
Sbjct: 658 MLESDAMKNEVRVIPTYDEVREHWSLRIERPHHGNVRVSVIDEEFLLTADYKQLVSTADT 717

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            ++       +        +      +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 718 FKDLIGEGALIKRGERSQAVKDFKGAMQWLMADAERNVSKQRYKGLGEMNPEQLWETTMD 777

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P+ R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 778 PNVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 825


>gi|56552479|ref|YP_163318.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56544053|gb|AAV90207.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 812

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/816 (52%), Positives = 576/816 (70%), Gaps = 17/816 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ + Q+  YDA SI++L+GLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+L GY
Sbjct: 1   MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS----YKV 116
            D++ + +  DGS +V DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF+  +    YKV
Sbjct: 61  CDLVKIAIYDDGSVSVEDNGRGIPTGIHPEEGVSAAEVIMTQLHAGGKFDNNANSNAYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS +L+L + R+G  + M F +G+   PL V G A +  GT V F 
Sbjct: 121 SGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRFH 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F + +FN++ L+HR REL+FLNS V++ L DKR+   + + +FY+GGI AFV +L
Sbjct: 180 PSAETFKITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVELFYEGGIAAFVKWL 239

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR K  L+  P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+  R+AL
Sbjct: 240 DRAKTALIPEPVAIHGDRDDVMIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAFRAAL 299

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y +KS   KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR  +
Sbjct: 300 TRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPL 359

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES + D ++ WLEE+P  AK+I++K++DA+  R+AA+RAR+LTRRKGV+DIASLPGKLAD
Sbjct: 360 ESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLAD 419

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP KSE+F+VEGDSAGGSAKQGR+R NQAILPL+GKILN ER+R D+MLSS+E+GT
Sbjct: 420 CQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEVGT 479

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI ALGTGI +D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+R MP +I NG LYI
Sbjct: 480 LIQALGTGI-RDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPEIIENGHLYI 538

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPL+ + + +S  Y+KDE +L++YL++  ++  +    +     S NDL   ++ A +
Sbjct: 539 AQPPLFKVAKNRSEVYLKDEAALDNYLMDAGVASMMLHTDNGDR--SGNDLHQMVEHARR 596

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
              L+      +    IE A ++G F  +   E    +  ++A  L     +S+  W   
Sbjct: 597 TRLLMNYVPNRYYAPLIETAALAGAFQSDIADEKRQDILKQVAEILTRSDSESDARWSVE 656

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT--ILSLIC----- 709
                 L +R+ RGV +   L+ + I S  +      +    E+Y++     L+      
Sbjct: 657 FIPEGFLFRRLWRGVTDAHTLDWNFIQSSEAAKLHQLAQEQAESYISTHPARLVTLAAQM 716

Query: 710 -NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  I  P  L + I ++G KG+S+ RYKGLGEMN  QLWETTL+P  RS+L+V++ 
Sbjct: 717 DEEAGQDIYRPSQLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVE 776

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            A  AD++FSRLMGD VEPRR+FIQ+N+L    LD+
Sbjct: 777 QADVADEIFSRLMGDVVEPRRDFIQQNALSVANLDV 812


>gi|254246825|ref|ZP_04940146.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Burkholderia cenocepacia PC184]
 gi|124871601|gb|EAY63317.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Burkholderia cenocepacia PC184]
          Length = 833

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/828 (47%), Positives = 543/828 (65%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 10  MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 69

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 70  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 129

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P++
Sbjct: 130 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPML 189

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 190 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 246

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 247 DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 306

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 307 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 366

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TR
Sbjct: 367 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 426

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 427 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 486

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 487 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 546

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 547 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAA 606

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I      +D   +E AV+ GV    S++E   + A  L  
Sbjct: 607 AISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHA 665

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+  A K+E      +        + V+R   G     V++     +   +     +N 
Sbjct: 666 ALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANT 725

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +        +      + ++   S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 726 FKGLIGEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 785

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 786 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 833


>gi|254451957|ref|ZP_05065394.1| DNA gyrase, B subunit [Octadecabacter antarcticus 238]
 gi|198266363|gb|EDY90633.1| DNA gyrase, B subunit [Octadecabacter antarcticus 238]
          Length = 775

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/775 (55%), Positives = 561/775 (72%), Gaps = 3/775 (0%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  SGLHHM+YEV+DN IDE+L G+AD + V ++ DGS +VSDNGRGIP  +H+
Sbjct: 1   MYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVNVKIHDDGSISVSDNGRGIPVGIHE 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
            EG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVVNALS +L+LRI R G  +   
Sbjct: 61  GEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDYLELRIWRNGKEHYAR 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F  G     L V    G+ TGTEV FL S D FS +DF ++TL+ RLREL+FLNS V+I 
Sbjct: 121 FEGGFTVKHLEVVADCGDRTGTEVRFLASLDTFSNRDFYFETLEKRLRELAFLNSGVRII 180

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+R  E     ++Y GG++ FV YLDR K  ++  PI + G RD I +++AM WND Y
Sbjct: 181 LTDERPAEHLVSELYYDGGVKEFVKYLDRSKTSILPEPIYVIGERDEIVVEVAMWWNDSY 240

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           +E VL FTNNIPQ+DGGTH++G R+ALTR I +Y + S  +KK+K S  GDD REG T V
Sbjct: 241 NEMVLPFTNNIPQRDGGTHMAGFRAALTRTINNYAQSSGIAKKEKISFTGDDAREGLTCV 300

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           LS+K+PDP+FSSQTK+KLVSSEVR  VE+ +N+ LS W EE+P  A+I+V K+++A+  R
Sbjct: 301 LSVKVPDPKFSSQTKDKLVSSEVRPAVENIMNEKLSEWFEENPQIARIVVSKIVEAAHAR 360

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           +AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+FLVEGDSAGGSA+ GR R+ QA
Sbjct: 361 EAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQA 420

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVERARFD+ML SQEIG L+ ALGTGIG+D F+I+KLRYHKI+IMTDADVD
Sbjct: 421 ILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVD 480

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           GAHIRTLLLTFFFRQMP LI  G LYI +PPLY ++RGKS  Y+KD+ ++ DYL  Q + 
Sbjct: 481 GAHIRTLLLTFFFRQMPQLIERGHLYIAQPPLYKVSRGKSEVYLKDQAAMNDYLTEQGVE 540

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
             +     +   I   DLR  +D+A ++ +++  F  ++ +  +EQA I+G F   + + 
Sbjct: 541 GAML-RQGNGEEIGGADLRRVVDEAGRLKRVLDAFPTHYPRHILEQAAIAGAFVSGAVEA 599

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
               +A K+A RL+ IA + E+ W G I  +  I + RI RGV+E   L+G  + S  ++
Sbjct: 600 DLQGVADKVAARLDLIANEWERGWQGRITQDKGIRLARILRGVEEVRTLDGPMMRSGEAR 659

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
               F+  +++ Y T  +LI       I GP  LL  +   G +G+S+QRYKGLGEMN S
Sbjct: 660 KSGTFTQHLQDVYNTPATLIRKDRVQNIYGPLDLLKAVLEEGERGLSLQRYKGLGEMNPS 719

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           QLWETTL+PD R+LL+VK+ D ++ADDLF++LMGD VEPRREFIQ+N+L    LD
Sbjct: 720 QLWETTLDPDARTLLQVKVDDVAEADDLFTKLMGDVVEPRREFIQQNALNVENLD 774


>gi|254468460|ref|ZP_05081866.1| DNA gyrase, B subunit [beta proteobacterium KB13]
 gi|207087270|gb|EDZ64553.1| DNA gyrase, B subunit [beta proteobacterium KB13]
          Length = 797

 Score =  898 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/806 (51%), Positives = 553/806 (68%), Gaps = 12/806 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  +N +Y +DSI++LKGL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTE--ENKAYSSDSIKVLKGLEAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
            D I V ++ D S +V DNGRGIPTD+ +  EE  SAAE++MT LHAGGKF+Q SYKVSG
Sbjct: 59  CDDIKVIIHPDNSVSVQDNGRGIPTDIKEDDEEKRSAAEIVMTELHAGGKFDQNSYKVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS WLKL++ R   I+E+ F  G     L + G   + TGTEV FLPS
Sbjct: 119 GLHGVGVSVVNALSDWLKLKVHRNNKIHEIEFARGERKESLKIIGDT-DKTGTEVQFLPS 177

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
              F+  +F+++ L  R+RELSFLN+ V+I LID R+ +       + GG+  FV YL++
Sbjct: 178 VSTFTDINFHFEILAKRIRELSFLNNGVKIELIDHRTGKS--ENFAFSGGVTGFVEYLNK 235

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  + ++P   +G +D I+++++M+WND Y ENV CFTNNIPQ+DGGTHL+GLR A+TR
Sbjct: 236 TKTTIHKNPFSAEGEKDGITVEVSMQWNDSYGENVQCFTNNIPQRDGGTHLTGLRGAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEV+ VV+ 
Sbjct: 296 TINTYIESNDLAKKAKVDTTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVQPVVQD 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V   L+ +L EHP +AKII  K++DA+  R+AAR+ARD+TRRKG +D   LPGKLADC 
Sbjct: 356 VVAKKLTDYLLEHPADAKIICGKIVDAARAREAARKARDMTRRKGAMDSLGLPGKLADCQ 415

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+AR DK+LSSQEI TLI
Sbjct: 416 EKDPSLSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARLDKLLSSQEIATLI 475

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGI +D F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ NG++YI +
Sbjct: 476 TALGTGIDKD-FNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPQLVENGYVYIAQ 534

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPL+ + + K  QY+KDE+ LE YLI  +L          K +IS   L N   + +  D
Sbjct: 535 PPLFKVRQNKKEQYLKDEQELEQYLIESALDGAELKI--DKNIISGESLGNLAREMILND 592

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
            +I+     +D + ++   + G  N +  +E  +S   KL N  +      +   + +  
Sbjct: 593 AVIRRLAHRYDSSILKAIYLCGDINLD-SEEAALSYVEKLKNSSSIENINFDVKKNPNSE 651

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
              I + +   G     VL+   + S   K     S+  ++      ++  N   +++  
Sbjct: 652 KFMIEINQFRHGNLITSVLDEEFLLSGDYKQIIKTSSLTKDLIQEKATISRNDKALEVGE 711

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD + S  + G+++QRYKGLGEMN SQLWETT++P  R LL+VKI DA  AD +FS
Sbjct: 712 FKEALDWLMSEAKSGLNIQRYKGLGEMNPSQLWETTMDPSVRRLLQVKIEDAISADQVFS 771

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR FI+ N+L    LDI
Sbjct: 772 TLMGDQVEPRRNFIESNALGVNNLDI 797


>gi|160871558|ref|ZP_02061690.1| DNA gyrase, B subunit [Rickettsiella grylli]
 gi|159120357|gb|EDP45695.1| DNA gyrase, B subunit [Rickettsiella grylli]
          Length = 847

 Score =  898 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/804 (48%), Positives = 530/804 (65%), Gaps = 13/804 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YD+ +I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDESL GY   I + L+
Sbjct: 47  YDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCSQIDIILH 106

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS TV DNGRGIP D+H EE  SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVN
Sbjct: 107 SDGSVTVKDNGRGIPVDIHTEENRSAAEVIMTVLHAGGKFDSNSYKVSGGLHGVGVSVVN 166

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FN 188
           ALS  L L I+R  N+YE ++  G    PL +TG    + GTE+ F P+  IF   + F+
Sbjct: 167 ALSEKLHLIIRRNNNVYEQTYRLGEPTAPLQITG-TTQERGTEIRFYPNKLIFQQNNKFH 225

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I++ D+R+ E  +    Y GGI+AFV YL+++K  + + P 
Sbjct: 226 YDILLKRLRELSFLNSGVAINITDERTNEETQ--FKYIGGIKAFVEYLNQNKTLIHKQPF 283

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                RD IS+++A++WND + EN+ CFTNNI Q+DGGTHL+G R+ALTR + +Y+E   
Sbjct: 284 YFSAERDGISVEVALQWNDSFQENIFCFTNNISQRDGGTHLAGFRAALTRTLNTYIEHEA 343

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK K +  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +VE+  ++ L A+L
Sbjct: 344 TNKKLKIATTGDDTREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVETLTSEKLEAFL 403

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E P +A+ I+ K++DA+  R+AAR+AR++TRRK  LDIA LPGKLADC E DP   ELF
Sbjct: 404 LETPQDARAIMMKIIDAARAREAARKAREMTRRKTALDIADLPGKLADCQETDPALCELF 463

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQGR+R  QAILPL GKILNVE++RFDKMLSS+ +GTLI ALG GIG++
Sbjct: 464 IVEGDSAGGSAKQGRNRRYQAILPLTGKILNVEKSRFDKMLSSEAVGTLIIALGCGIGKE 523

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI +PPLY I +GK
Sbjct: 524 EYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELLQRGTIYIAQPPLYKIKKGK 583

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             QY+KD+ +L+ YL   +L   I         I    L   I +  K   +I+     +
Sbjct: 584 QEQYLKDDAALQAYLTQTALHNAILYPHSESFSIQGIGLETLIMNYRKTQMIIQHLSRRY 643

Query: 609 DKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSINN------S 660
               ++  +       E+  +    +        +L    +     +  +I         
Sbjct: 644 PIDALQVILDLPPLPSETLADSTKMLEWTKSWHMQLQKTTDNEAIRYQITIREDTERQVF 703

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
              +    +G++  + +      +   +     + ++         +  +  K  +    
Sbjct: 704 LPEITINTQGLETLYKISYDFFKTPEYQCLFDMATQLYGLIGPGAYVQRDTKKQTVKNFK 763

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            + + + +  R+G ++QRYKGLGEMN  QLW+TT++P+TR L+RV I DA   D +F+ L
Sbjct: 764 EVYEWLLAEARRGQAIQRYKGLGEMNPDQLWQTTMDPNTRCLVRVTIEDAIATDQIFTTL 823

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+VEPRR+FIQ+N+L    LDI
Sbjct: 824 MGDQVEPRRDFIQQNALEVGNLDI 847


>gi|134294131|ref|YP_001117866.1| DNA gyrase subunit B [Burkholderia vietnamiensis G4]
 gi|134137288|gb|ABO53031.1| DNA gyrase subunit B [Burkholderia vietnamiensis G4]
          Length = 824

 Score =  898 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/828 (47%), Positives = 537/828 (64%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNTQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  GI              +P++
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGIAQDRVLEQVDGVEVSPML 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP ++  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 FYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSENGA 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I      +D   +E  +     +  S +E   + A  L  
Sbjct: 598 AISGDALGELARSYLLSQSVIGRLSRLYDPAALEAIMDGVSIDL-SSEESTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+    K+E      +        + V+R   G     V++     +   +     +  
Sbjct: 657 ALHDETLKNEVRVVPSYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTAKT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            E        +      + +T   S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FEGLIQAGAVIKRGERSMAVTDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 PTVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824


>gi|107024100|ref|YP_622427.1| DNA gyrase subunit B [Burkholderia cenocepacia AU 1054]
 gi|116688027|ref|YP_833650.1| DNA gyrase subunit B [Burkholderia cenocepacia HI2424]
 gi|105894289|gb|ABF77454.1| DNA gyrase subunit B [Burkholderia cenocepacia AU 1054]
 gi|116646116|gb|ABK06757.1| DNA gyrase subunit B [Burkholderia cenocepacia HI2424]
          Length = 824

 Score =  898 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/828 (47%), Positives = 542/828 (65%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P++
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPML 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAA 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I      +D   +E AV+ GV    S++E   + A  L  
Sbjct: 598 AISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+  A K+E      +        + V+R   G     V++     +   +     +N 
Sbjct: 657 ALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +        +      + +    S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824


>gi|170731359|ref|YP_001763306.1| DNA gyrase subunit B [Burkholderia cenocepacia MC0-3]
 gi|169814601|gb|ACA89184.1| DNA gyrase, B subunit [Burkholderia cenocepacia MC0-3]
          Length = 824

 Score =  898 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/828 (47%), Positives = 541/828 (65%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P++
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPML 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAA 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I+     +D   +E AV+ GV    S +    + A  L  
Sbjct: 598 AISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSSEASTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+  A K+E      +        + V+R   G     V++     +   +     +N 
Sbjct: 657 ALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +        +      + +    S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824


>gi|206558823|ref|YP_002229583.1| DNA gyrase subunit B [Burkholderia cenocepacia J2315]
 gi|198034860|emb|CAR50732.1| DNA gyrase subunit B [Burkholderia cenocepacia J2315]
          Length = 824

 Score =  898 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/828 (47%), Positives = 543/828 (65%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P++
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPML 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV ++++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAA 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I+     +D   +E AV+ GV    S++E   + A  L  
Sbjct: 598 AISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+  A K+E      +        + V+R   G     V++     +   +     +N 
Sbjct: 657 ALHDEALKNEVRVVPSYDPVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +        +      + +    S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824


>gi|255068060|ref|ZP_05319915.1| DNA gyrase, B subunit [Neisseria sicca ATCC 29256]
 gi|255047658|gb|EET43122.1| DNA gyrase, B subunit [Neisseria sicca ATCC 29256]
          Length = 834

 Score =  898 bits (2321), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/803 (49%), Positives = 535/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 39  MTDQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 97

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 98  CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 157

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 158 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 216

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I LID+R  +    +    GG+  FV Y++R K
Sbjct: 217 TFGNVEYSFDILAKRIRELSFLNNGVDIELIDERDGK--HESFALSGGVAGFVQYMNRKK 274

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 275 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 334

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 335 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 394

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 395 NQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 454

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 455 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 514

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 515 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 574

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 575 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 632

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      N  
Sbjct: 633 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGNRF 691

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++  +    
Sbjct: 692 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDVDSFE 750

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + L+ +    +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 751 TALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 810

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 811 MGDEVEPRRAFIENNALIAQNID 833


>gi|238025687|ref|YP_002909918.1| DNA gyrase subunit B [Burkholderia glumae BGR1]
 gi|237874881|gb|ACR27214.1| DNA gyrase, B subunit [Burkholderia glumae BGR1]
          Length = 825

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/828 (46%), Positives = 536/828 (64%), Gaps = 28/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MTEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +++DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISITDNGRGIPTDVKLDDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ 
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPME 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +   
Sbjct: 181 VVGETE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG+D +++ KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPL+ +  GK  +Y+KDE  L  +++  +L            
Sbjct: 538 LYRQMPDMIERGYVYIAQPPLFKVKAGKDERYLKDEGELNAHMLRLALHGSELQPGGEAA 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +++     +D   +E  +     +   +Q    S  +  A 
Sbjct: 598 AISGDALGALARSYLLSRGVVERLGRLYDPAALEAIMDGVAIDLAGEQAATASAEALQAA 657

Query: 641 RLNFIAEKSEK----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L   + K+E      +  +  +  + ++R   G     V++   + +   K     ++ 
Sbjct: 658 MLAGDSMKNEVRVKTRYDEAREHWSLRIERPHHGNVRISVIDEEFLLTADYKQLVSTADT 717

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            ++       +        +    S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 718 FKDLIGEGALIKRGERSQAVKDFKSAMQWLMADAERNVSKQRYKGLGEMNPEQLWETTMD 777

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P+ R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 778 PNVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 825


>gi|170697756|ref|ZP_02888843.1| DNA gyrase, B subunit [Burkholderia ambifaria IOP40-10]
 gi|170137371|gb|EDT05612.1| DNA gyrase, B subunit [Burkholderia ambifaria IOP40-10]
          Length = 824

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/828 (47%), Positives = 540/828 (65%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P++
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPML 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAA 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I+     +D   +E  +     +  S++    + A  L  
Sbjct: 598 AISGDALGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+  A K+E      +        + ++R   G     V++     +   +     ++ 
Sbjct: 657 ALHDDALKNEVRVVPSYDPVREQRSLHIERTHHGNVRVSVIDQEFQHTADYQQLVTTADT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +        +      + ++   S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FKGLIGEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824


>gi|298370306|ref|ZP_06981622.1| DNA gyrase, B subunit [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281766|gb|EFI23255.1| DNA gyrase, B subunit [Neisseria sp. oral taxon 014 str. F0314]
          Length = 796

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/803 (49%), Positives = 535/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTDQKHK-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I LID+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELIDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      N  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGNRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++  +    
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDVDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + L+ +    +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|171316343|ref|ZP_02905563.1| DNA gyrase, B subunit [Burkholderia ambifaria MEX-5]
 gi|171098472|gb|EDT43274.1| DNA gyrase, B subunit [Burkholderia ambifaria MEX-5]
          Length = 824

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/828 (47%), Positives = 538/828 (64%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P++
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEQVDGVEVSPML 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAA 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I+     +D   +E  +     +  S++    + A  L  
Sbjct: 598 AISGDALGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+  A K+E      +        + ++R   G     V++     +   +     +N 
Sbjct: 657 ALHDDALKNEVRVVPSYDPVREQRSLHIERTHHGNVRVSVIDQEFQHTADYQQLVATANT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
                     +      + +    S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FTGLIGEGAVIKRGERSMAVNDFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824


>gi|319785624|ref|YP_004145099.1| DNA gyrase subunit beta [Pseudoxanthomonas suwonensis 11-1]
 gi|317464136|gb|ADV25868.1| DNA gyrase, B subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 811

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/813 (50%), Positives = 537/813 (66%), Gaps = 12/813 (1%)

Query: 1   MSDNIQNSS---YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+   +S+   YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN+IDE+L
Sbjct: 1   MSEQTPSSTPGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A+ + V +  DGS  VSDNGRGIP D HKEEG SAAEVI+T LHAGGKF+  SYKVS
Sbjct: 61  AGHANEVIVRILEDGSVAVSDNGRGIPVDTHKEEGRSAAEVILTVLHAGGKFDDNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I R+G  ++  +  G    PL       +  GT + F P
Sbjct: 121 GGLHGVGVSVVNALSEHLWLDIWRDGFHWQQEYSLGEPLYPLKQL-EPSDKRGTSLRFKP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           + +IF+   F+Y+ L  RLRELSFLNS V+++LID+R  E R+ T  Y+GGI +FV +L 
Sbjct: 180 AVEIFTDVQFHYEILARRLRELSFLNSGVKVTLIDER-GEGRQDTFQYEGGIRSFVEHLA 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + K PL  + I + G  + I +++A++W D Y E + CFTNNIPQKDGGTHL+G R+ALT
Sbjct: 239 QLKTPLHPNVISVSGEHNGIVVEVALQWTDAYQETMFCFTNNIPQKDGGTHLAGFRAALT 298

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +T+Y+E++  +K+ K S  GDD REG  +VLS+K+PDP FSSQTKEKLVSSEV+  VE
Sbjct: 299 RTLTNYIEQNGLAKQAKVSFSGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSEVKPAVE 358

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           +     L  +L+EHP EAK IV+KV+DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC
Sbjct: 359 NTFGARLEEFLQEHPQEAKAIVEKVVDAARAREAARKARELTRRKGALDIAGLPGKLADC 418

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+GTL
Sbjct: 419 QEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEVGTL 478

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI 
Sbjct: 479 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELLERGHVYIG 538

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
            PPLY I +GK   Y+KD+ +L+ YL + ++     +  D +  I+   L   +      
Sbjct: 539 LPPLYKIKQGKQELYLKDDAALDAYLASSAVDNAALVPADGEPPITGEGLEKLLLAYAAA 598

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES-DQEINVSLASKLANRLN---FIAEKSEKSW 653
              I       D   +E  V     + E   +E        L  RLN     + +     
Sbjct: 599 RDTITRSAHRFDPMLLEALVDFAPLDSEHLLREGGADALKALEARLNRGKLGSPRFSLEL 658

Query: 654 HGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
             +I +  + + + R   G Q Q VL  +   S   +     +  +         +I   
Sbjct: 659 LPAIEDRPAALRLTRRHMGEQVQQVLPLTIFESGELRPLHDAAVLLHGLVREGAQVIRGN 718

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
               +T        +    +KG  +QR+KGLGEMN  QLWETT+NPDTR LLRV+I DA 
Sbjct: 719 RSQAVTSFAEAQAWLMDEAKKGRQIQRFKGLGEMNPEQLWETTVNPDTRRLLRVRIEDAV 778

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            AD +FS LMGD VEPRREFI+ N+L    LD+
Sbjct: 779 AADQIFSTLMGDVVEPRREFIENNALKVANLDV 811


>gi|329891030|ref|ZP_08269373.1| DNA gyrase, B subunit [Brevundimonas diminuta ATCC 11568]
 gi|328846331|gb|EGF95895.1| DNA gyrase, B subunit [Brevundimonas diminuta ATCC 11568]
          Length = 809

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/811 (55%), Positives = 574/811 (70%), Gaps = 12/811 (1%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++    S  Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G
Sbjct: 1   MTEQTAPSPEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD++TVTLN DGS TV+DNGRGIPT +H EEGISAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HADLVTVTLNEDGSVTVTDNGRGIPTAIHAEEGISAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-------TGTE 172
           LHGVGVSVVNALS WL+L I R+G  + + F  G     L V G A          TGTE
Sbjct: 121 LHGVGVSVVNALSDWLELVIYRDGKKHSVRFERGETVRSLAVVGDAPMREDKGRLLTGTE 180

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTF PS   FS  DF+  TL+HRLREL+FLNS V I L D R  EP EI + Y+GG+EAF
Sbjct: 181 VTFFPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLSDHRGAEPIEIMLHYEGGVEAF 240

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +LD+ K P+++  I I+G +D I +DLA+ WND YHE +LCFTNNIPQ+DGGTHLS  
Sbjct: 241 VRHLDKSKTPILKDVIVIRGQKDGIELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAF 300

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R++LTR + SY+E S  +KK+K +  G+D REG T VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 301 RASLTRVMGSYIESSGLAKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 360

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R  VES  ++GL+ W EEHP+EAK+IV K+++A+  R+AAR+ARDLTRRK  L+I+SLPG
Sbjct: 361 RPAVESLCSEGLATWFEEHPVEAKMIVSKIIEAASAREAARKARDLTRRKSALEISSLPG 420

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERARFD+MLSS 
Sbjct: 421 KLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLSSD 480

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            IGTLI ALGTGIG+D F+ +KLRYHKII+M DADVDGAHIRTLLLTFF+RQMP LI  G
Sbjct: 481 LIGTLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYRQMPELIERG 540

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY +++GK  +YVKD+  ++ YLI +  +E       S  V +  DL+  + 
Sbjct: 541 HVYIAQPPLYKVSKGKQHRYVKDQAEMDAYLIEEGSAEAALELA-SGEVRAGRDLQELVR 599

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           +A     L+           IEQ  ++G+F+  + +  + +  +      N  AE+ +  
Sbjct: 600 EAKGFKALVDRLATRAPAFAIEQGALAGLFSENAGELADRAARAAERL--NLYAEEGDGP 657

Query: 653 WHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           W G +     +   R+ R V E  VL+     S  ++     +   +  +          
Sbjct: 658 WSGELAAQGGVAFNRVRRAVSETIVLDEVLGRSLDARRLAERAVAFDGLFSAPAVYRRKD 717

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
               I GP  LL  +   G+KGI++QRYKGLGEMN  QLWETTL+ + R+LL+VK+    
Sbjct: 718 KTTTIRGPLDLLAAVLDAGKKGIAIQRYKGLGEMNPEQLWETTLDANARTLLQVKVEHGD 777

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            ADDLF++LMGD VEPRREFIQ+N+L +A+D
Sbjct: 778 DADDLFAKLMGDVVEPRREFIQDNALDAAVD 808


>gi|254295377|ref|YP_003061400.1| DNA gyrase subunit B [Hirschia baltica ATCC 49814]
 gi|254043908|gb|ACT60703.1| DNA gyrase, B subunit [Hirschia baltica ATCC 49814]
          Length = 813

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/818 (54%), Positives = 576/818 (70%), Gaps = 20/818 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  QN+ Y A SI++LKGL+AV+KRP MYIGDTD  SGLHHMIYEV+DNAIDE+L G+
Sbjct: 1   MTEPTQNAEYGAGSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEALAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD +TVTL+ DGS ++SDNGRG+P DLH  EGISAAEVIMT+LHAGGKF+  SYKVSGGL
Sbjct: 61  ADYVTVTLHPDGSASISDNGRGVPVDLHPTEGISAAEVIMTQLHAGGKFDDNSYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-------TGTEV 173
           HGVGVSVVNALS WL+L I R G  Y M F +G+ D PL + G A          TGTEV
Sbjct: 121 HGVGVSVVNALSEWLQLSINRNGKRYSMRFTHGVSDAPLEIVGDAPMRPDGTRPETGTEV 180

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            FLPS+D F++ +F  +TL+HRLREL+FLNS V+I   D+R  EP E  + Y+GG+ AFV
Sbjct: 181 RFLPSTDTFTMVEFKRETLEHRLRELAFLNSGVKIVFRDERPAEPIETILEYEGGVVAFV 240

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +LD+ +  ++   I+ +  +D +++D A++WNDGYHENVLCFTNNIPQ+DGGTHL+G R
Sbjct: 241 EHLDKSRTKILPEAIQARAEKDGMTVDAALQWNDGYHENVLCFTNNIPQRDGGTHLAGFR 300

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y + +  +KK+K  + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR
Sbjct: 301 AALTRVINKYAQATGVAKKEKVDISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 360

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V++ + + LS W EE+P EAKII++K++ A+  R+A RRARDL RRK  LDI SLPGK
Sbjct: 361 PIVDNLMTEALSTWFEENPNEAKIIMQKIVQAAAAREAMRRARDLARRKTALDITSLPGK 420

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP KSELF+VEGDSAGGSAKQGR+RENQA+LPLRGKILNVERARFD+ML S +
Sbjct: 421 LADCQEKDPAKSELFIVEGDSAGGSAKQGRNRENQAVLPLRGKILNVERARFDRMLGSDQ 480

Query: 474 IGTLITALGTGIGQDS-------FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           +GTLITALG  IG+ S       F  +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP
Sbjct: 481 VGTLITALGASIGRRSEENPNEGFQPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMP 540

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G L+I +PPLY   +G+S +Y+KD+  ++ +LI +  S E  +       I   D
Sbjct: 541 ELIERGHLFIAQPPLYKAEKGRSSRYLKDDAEMDAFLIEEGTSGETLILST-GEQIGGED 599

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
           LR  + DA      +           +EQA I+G       +    + A   A RLN +A
Sbjct: 600 LRERVRDAAAFKHTLSRLALRAPAFILEQAAIAGA----MAEGAGDAEAKLTAERLNILA 655

Query: 647 EKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
           E+ E +W     N  ++++R  R V E+  L+ + +    +K        +   +     
Sbjct: 656 EEGENTWTAKFENGGLVLEREVRNVMERAALDATLLALPDAKRLSERGKEMSSIFRESGR 715

Query: 707 LI-CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           L    G ++++ GP SLL  +   G KGI +QRYKGLGEMN  QLWETTL+ + RSLL+V
Sbjct: 716 LRHEKGGEVEVFGPLSLLSAVLKSGAKGIKIQRYKGLGEMNPDQLWETTLDRNARSLLQV 775

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           ++  A  AD++F++LMGD VEPRREFIQEN+L + +D+
Sbjct: 776 RVEHADTADEMFTKLMGDVVEPRREFIQENALEAEVDV 813


>gi|319639457|ref|ZP_07994207.1| DNA gyrase subunit B [Neisseria mucosa C102]
 gi|317399352|gb|EFV80023.1| DNA gyrase subunit B [Neisseria mucosa C102]
          Length = 796

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/803 (49%), Positives = 535/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTDQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L N     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGEELANTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  + +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRAVAE-LSGLLDEKEVALERIEGHEGHQF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++        L    ++  I    
Sbjct: 654 -IKITRKLHGNVMVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 AALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALLAQNID 795


>gi|115350059|ref|YP_771898.1| DNA gyrase subunit B [Burkholderia ambifaria AMMD]
 gi|115280047|gb|ABI85564.1| DNA gyrase subunit B [Burkholderia ambifaria AMMD]
          Length = 824

 Score =  896 bits (2315), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/828 (47%), Positives = 540/828 (65%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P++
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPML 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAA 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I+     +D   +E  +     +  S++    + A  L  
Sbjct: 598 AISGDALGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+  A K++      +        + V+R   G     V++     +   +     ++ 
Sbjct: 657 ALHDDALKNDVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVTTADT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +        +      + ++   S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FKGLIGEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824


>gi|78064661|ref|YP_367430.1| DNA gyrase subunit B [Burkholderia sp. 383]
 gi|77965406|gb|ABB06786.1| DNA gyrase subunit B [Burkholderia sp. 383]
          Length = 824

 Score =  896 bits (2315), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/828 (47%), Positives = 542/828 (65%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNPQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P++
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEMVDGVEVSPML 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV ++++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEFINKTKTNLHPTVFFATGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAA 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           VIS + L       L    +I+     +D   +E  +   V +  S++    + A  L  
Sbjct: 598 VISGDALGELARSYLLSKSVIERLSRLYDPAALEAIMDGVVIDL-SNEASTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+  A K+E      +        + V+R   G     V++     +   +     +N 
Sbjct: 657 ALHDEALKNEVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +        +      + +T   S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FKGLIGEGAVIKRGERSMAVTDFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824


>gi|260774538|ref|ZP_05883451.1| DNA gyrase subunit B [Vibrio metschnikovii CIP 69.14]
 gi|260610444|gb|EEX35650.1| DNA gyrase subunit B [Vibrio metschnikovii CIP 69.14]
          Length = 781

 Score =  895 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/783 (48%), Positives = 522/783 (66%), Gaps = 11/783 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  +GLHHM++EV+DN+IDE+L G+   I VT++ D S +VSD+GRGIPT+LH 
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVSDDGRGIPTELHT 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  +
Sbjct: 61  EENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQT 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G+   PL V G     TGT + F PS++ F+  +F+YD L  RLRELSFLNS V I 
Sbjct: 121 YRHGVPQAPLAVVGDTE-RTGTTLRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIR 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDG 268
           L D+R  +       Y+GGI AFV++L+R+K P+          R++  S+++AM+WNDG
Sbjct: 180 LQDEREADKH-DHFMYEGGIRAFVTHLNRNKTPIHDKVFHFNHDREDGTSVEVAMQWNDG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           + EN+ CFTNNIPQ+DGGTHL+G R+ALTR + +Y+EK   SKK K +  GDD REG T+
Sbjct: 239 FQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGYSKKAKTATSGDDAREGLTA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+PDP+FSSQTK+KLVSSEV++ VES + + L+ +L EHP EAK++  K++DA+  
Sbjct: 299 VVSVKVPDPKFSSQTKDKLVSSEVKAAVESAMGEKLNEFLAEHPSEAKMVCSKIIDAARA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQ
Sbjct: 359 REAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 419 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 478

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DG+HIRTLLLTFF+RQMP LI  G++YI +PPLY + +GK  QY+KDE+++  Y I  +L
Sbjct: 479 DGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEDAMTQYQIALAL 538

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--S 626
                        ++   L   +       KL++     +    + +         +   
Sbjct: 539 DNASLHVNADAPALAGEPLEKLVLQYNAAMKLVERMSRRYPLAMLNEFTYMPRLTEQQCQ 598

Query: 627 DQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSS 681
           D     +   +L  +LN     + +       +  +      +     GV   ++L    
Sbjct: 599 DSSAVEAWTERLVTQLNAKEVGASQYHFAIEHNPELGVYSPKIIVRTHGVTYDYLLSVDL 658

Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           + S          + ++        +        ++   + LD +    R+G+++QRYKG
Sbjct: 659 LNSKEYNRLADLFDSLDGLLEEGAYIQRGERTQVVSSFTAALDWLIKESRRGLAIQRYKG 718

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800
           LGEMN  QLWETT++P++R +++V I DA  AD+LF+ LMGD+VEPRR FI+ N+L    
Sbjct: 719 LGEMNPDQLWETTMDPESRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIENNALRVAN 778

Query: 801 LDI 803
           LD+
Sbjct: 779 LDV 781


>gi|254369714|ref|ZP_04985724.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122673|gb|EDO66802.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 803

 Score =  895 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/812 (52%), Positives = 551/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   GS  + TGT +TF PS +
Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LIDK +   R     Y GGI AFV YL+  K
Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEVFKYDGGIVAFVKYLNNSK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P E+KII +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NEKLQEFLLENPKESKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 475 LGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L +YL N  L         +  VIS   L N+ +   K  K+
Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654
           IK +   + +  +        +  ES          K+    N  A   E+         
Sbjct: 594 IKKYTKTYPEKLLRVMAYGAKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651

Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           G     +I   V     G    ++++ S   +   +    + + + +       +     
Sbjct: 652 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYENLVTYGDVLSDISFEGAYVERGAK 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803


>gi|261364800|ref|ZP_05977683.1| DNA gyrase, B subunit [Neisseria mucosa ATCC 25996]
 gi|288566827|gb|EFC88387.1| DNA gyrase, B subunit [Neisseria mucosa ATCC 25996]
          Length = 796

 Score =  895 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/803 (49%), Positives = 535/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTDQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I LID+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELIDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      N  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGNRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++  +    
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDVDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + L+ +    +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|328675722|gb|AEB28397.1| DNA gyrase subunit B [Francisella cf. novicida 3523]
          Length = 803

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/812 (52%), Positives = 550/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   GS  + TGT +TF PS D
Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGVEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LIDK +   R     Y GGI AFV YL+  K
Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKII +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L +YL N  L        D   VIS   L N+ +   K  K+
Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLSDGN-VISGQVLANYYELYQKSQKV 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------- 653
           IK +   + +  +        +  ES          K+  + N  A   E+         
Sbjct: 594 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVEKCNQKALSYERFELIQTKDI 651

Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
              S       V     G    ++++ S   +   +    + + + +       +     
Sbjct: 652 GEDSKETISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803


>gi|241759142|ref|ZP_04757250.1| DNA gyrase, B subunit [Neisseria flavescens SK114]
 gi|241320561|gb|EER56838.1| DNA gyrase, B subunit [Neisseria flavescens SK114]
          Length = 796

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/803 (49%), Positives = 534/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTDQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S +
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLRVVGDS-DKKGTTVRFLASVE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGTGIGKEEFNTEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L N     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGEELANTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  + +  N ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESANRAVAE-LSGLLDEKEVALERIEGHEGHQF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++        L    ++  I    
Sbjct: 654 -IKITRKLHGNVMVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALLAQNID 795


>gi|240015025|ref|ZP_04721938.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI18]
 gi|240081614|ref|ZP_04726157.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19]
 gi|240122094|ref|ZP_04735056.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID24-1]
 gi|240124387|ref|ZP_04737343.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332]
          Length = 871

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 76  MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 134

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 135 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 194

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL + G + +  GT V FL  ++
Sbjct: 195 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 253

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 254 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 311

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 312 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 371

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 372 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 431

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 432 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 491

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 492 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 551

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 552 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 611

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 612 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 669

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 670 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHQF 728

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++       
Sbjct: 729 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 787

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 788 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 847

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 848 MGDEVEPRRAFIENNALIAQNID 870


>gi|296315053|ref|ZP_06864994.1| DNA gyrase, B subunit [Neisseria polysaccharea ATCC 43768]
 gi|296838081|gb|EFH22019.1| DNA gyrase, B subunit [Neisseria polysaccharea ATCC 43768]
          Length = 796

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/803 (49%), Positives = 534/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHQF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +   +    
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDVDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 AALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|89256831|ref|YP_514193.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica LVS]
 gi|115315217|ref|YP_763940.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167009278|ref|ZP_02274209.1| DNA gyrase, B subunit [Francisella tularensis subsp. holarctica
           FSC200]
 gi|290954382|ref|ZP_06559003.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312203|ref|ZP_06803005.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144662|emb|CAJ79986.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica LVS]
 gi|115130116|gb|ABI83303.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 803

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/812 (52%), Positives = 551/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   GS  + TGT +TF PS +
Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LIDK +   R     Y GGI AFV YL+  K
Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEVFKYDGGIVAFVKYLNNSK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKII +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 475 LGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L +YL N  L         +  VIS   L N+ +   K  K+
Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654
           IK +   + +  +        +  ES          K+    N  A   E+         
Sbjct: 594 IKKYTKTYPEKLLRVMAYGAKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651

Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           G     +I   V     G    ++++ S   +   +    + + + +       +     
Sbjct: 652 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803


>gi|161523183|ref|YP_001578195.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616]
 gi|189348956|ref|YP_001944584.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616]
 gi|221201812|ref|ZP_03574849.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2M]
 gi|221207682|ref|ZP_03580690.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2]
 gi|221214572|ref|ZP_03587542.1| DNA gyrase, B subunit [Burkholderia multivorans CGD1]
 gi|160340612|gb|ABX13698.1| DNA gyrase, B subunit [Burkholderia multivorans ATCC 17616]
 gi|189332978|dbj|BAG42048.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616]
 gi|221165462|gb|EED97938.1| DNA gyrase, B subunit [Burkholderia multivorans CGD1]
 gi|221172528|gb|EEE04967.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2]
 gi|221178232|gb|EEE10642.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2M]
          Length = 824

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/828 (47%), Positives = 537/828 (64%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVVDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ 
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQ 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 VIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP +I  G++YI +PPLY +  GK  +Y+KD+  L  +++  +L     L  ++  
Sbjct: 538 FYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQGSELLPSENAT 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            I+ + L       L    +I+     +D   +E  +     +  S +    + A  L  
Sbjct: 598 PITGDALGELARSYLMSQSVIERLSRLYDPAALEAIMDGVSIDL-SSEASTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+    K+E      +        + V+R   G     V++     +   +     +  
Sbjct: 657 ALHDDTLKNEVRVVPAYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVNTAKT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            E        +      + +T   + +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FEGLIQAGAVIKRGERSMAVTDFKNAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P+ R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 PNVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824


>gi|169656699|ref|YP_001429063.2| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|164551767|gb|ABU62107.2| DNA gyrase, B subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 805

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/812 (52%), Positives = 551/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 3   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 60  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   GS  + TGT +TF PS +
Sbjct: 120 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LIDK +   R     Y GGI AFV YL+  K
Sbjct: 179 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEVFKYDGGIVAFVKYLNNSK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 237 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 297 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKII +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 417 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 477 LGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L +YL N  L         +  VIS   L N+ +   K  K+
Sbjct: 537 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 595

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654
           IK +   + +  +        +  ES          K+    N  A   E+         
Sbjct: 596 IKKYTKTYPEKLLRVMAYGAKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 653

Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           G     +I   V     G    ++++ S   +   +    + + + +       +     
Sbjct: 654 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 714 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 774 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 805


>gi|239997997|ref|ZP_04717921.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02]
 gi|240017473|ref|ZP_04724013.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA6140]
 gi|240113895|ref|ZP_04728385.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11]
 gi|240116627|ref|ZP_04730689.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18]
 gi|240124740|ref|ZP_04737626.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|240129064|ref|ZP_04741725.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|291042854|ref|ZP_06568595.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2]
 gi|291013288|gb|EFE05254.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2]
 gi|317165439|gb|ADV08980.1| DNA gyrase subunit B [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 871

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 76  MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 134

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 135 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 194

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL + G + +  GT V FL  ++
Sbjct: 195 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 253

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 254 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 311

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 312 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 371

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 372 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 431

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 432 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 491

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 492 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 551

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 552 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 611

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 612 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 669

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 670 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHRF 728

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++       
Sbjct: 729 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 787

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 788 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 847

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 848 MGDEVEPRRAFIENNALIAQNID 870


>gi|118497199|ref|YP_898249.1| DNA gyrase subunit B [Francisella tularensis subsp. novicida U112]
 gi|194323498|ref|ZP_03057275.1| DNA gyrase, B subunit [Francisella tularensis subsp. novicida FTE]
 gi|254372564|ref|ZP_04988053.1| hypothetical protein FTCG_00127 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118423105|gb|ABK89495.1| DNA gyrase subunit B [Francisella novicida U112]
 gi|151570291|gb|EDN35945.1| hypothetical protein FTCG_00127 [Francisella novicida GA99-3549]
 gi|194322353|gb|EDX19834.1| DNA gyrase, B subunit [Francisella tularensis subsp. novicida FTE]
          Length = 803

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/812 (52%), Positives = 549/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   GS  + TGT +TF PS +
Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LIDK +   R     Y GGI AFV YL+  K
Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKII +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L +YL N  L         +  VIS   L N+ +   K  K+
Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK---SWHGSI 657
           IK +   + +  +        +  ES          K+    N  A   E+        I
Sbjct: 594 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651

Query: 658 NNSDIL-----VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                      V     G    ++++ S   +   +    + + + +       +     
Sbjct: 652 GEDGKETISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803


>gi|307296994|ref|ZP_07576810.1| DNA gyrase, B subunit [Sphingobium chlorophenolicum L-1]
 gi|306877520|gb|EFN08748.1| DNA gyrase, B subunit [Sphingobium chlorophenolicum L-1]
          Length = 835

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/840 (54%), Positives = 592/840 (70%), Gaps = 42/840 (5%)

Query: 1   MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+  QN+    SY ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+
Sbjct: 1   MSEESQNNPNSNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQK 112
           L G+ D I +TLN DGS +V DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF    +  
Sbjct: 61  LAGHCDRILITLNPDGSVSVEDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFENTSDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGT 171
           +YKVSGGLHGVGVSVVNALS +L L I R+G  + M F  G    PL V G A     GT
Sbjct: 121 AYKVSGGLHGVGVSVVNALSEYLDLNIWRDGKEHYMRFAYGDAVAPLKVIGDAPAGKKGT 180

Query: 172 EVTFLPSSDIFS--------VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           +VTFLPS++             +F+++ L+HR REL+FLNS V++ L D R  E +E+ +
Sbjct: 181 KVTFLPSTEKVPGDGGTFKNHTEFDFEKLEHRYRELAFLNSGVRLFLADARHEEKKEVEL 240

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           FY+GGI AFV YLDR+K PLM  PI I GSRD+++ID+A+ WND Y+ENVLCFTNNIPQ+
Sbjct: 241 FYEGGIAAFVKYLDRNKTPLMPDPIAISGSRDDVTIDVALEWNDSYYENVLCFTNNIPQR 300

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+  R+ALTR + +Y +KS   KK+K S+ G+D REG T+++S+K+PDP+FSSQT
Sbjct: 301 DGGTHLAAFRAALTRTLNNYADKSGMLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQT 360

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR  +ES + D ++ WLEE+P   K+IV+KV+DA+  R+AA++AR+LTRRKG
Sbjct: 361 KDKLVSSEVRQPLESLMADKMAEWLEENPQHGKMIVQKVIDAAAAREAAKKARELTRRKG 420

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           V+DIASLPGKLADC ERDP KSELFLVEGDSAGGSAKQGR+R NQAILPL+GKILNVERA
Sbjct: 421 VMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERA 480

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           RFD+MLSS+E+GTLI A+GTGI +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF+R
Sbjct: 481 RFDRMLSSKEVGTLIQAMGTGI-RDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYR 539

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           QMP +I  G LYI +PPLY  TRG+S  Y+K+E +LE+YL++  +         + G+ S
Sbjct: 540 QMPQIIEAGHLYIAQPPLYKATRGRSEVYLKNEAALENYLVDNGVESMALE--TTGGMRS 597

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
             DLR+ I+   ++  +++     ++   IE   I+   + E   +      +     ++
Sbjct: 598 GEDLRHLIEHGRRMRAVMRYVPRRYNPAIIEALAINAALDPELSHDAQAERLANTVKWMD 657

Query: 644 FIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
             A+  E  W G I        +R+ RGV +  ++E   I S  ++     +    ++Y 
Sbjct: 658 --AQDDEGRWSGRIAEEGGFHFERLWRGVTDHHMIEAGFIGSAEARKLHAIAAEEADSYR 715

Query: 703 TILSLIC----------NGDKIKITG--------PCSLLDTIFSIGRKGISMQRYKGLGE 744
           T   L+             D + +          P  LL+ I + GRKG+++QRYKGLGE
Sbjct: 716 TASRLVTAKAAAAAEEAGDDDLPVASKGAVAVTRPSELLEAILASGRKGLAIQRYKGLGE 775

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           MNA QLWETTL+PD RS+LRV++  A  AD++F+RLMGD VEPRREFIQ+N+L    LD+
Sbjct: 776 MNAEQLWETTLDPDNRSMLRVEVEQADVADEIFTRLMGDVVEPRREFIQDNALNVANLDV 835


>gi|325528071|gb|EGD05283.1| DNA gyrase subunit B [Burkholderia sp. TJI49]
          Length = 824

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/828 (47%), Positives = 540/828 (65%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ 
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVLEKIDGEEVSPMQ 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           + G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 IIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEYINKTKSNLHPTIFHVNGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPSKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP ++  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 FYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSENAV 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I+     +D   +E A++ GV    S +    + A  +  
Sbjct: 598 PISGDALGELARSYLMSQSVIERLGRLYDPAALE-AIMDGVVVDLSSEASTEASAKAMHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+    K+E      +        + V+R   G     V++     +   +     +  
Sbjct: 657 ALHDDTLKNEVRVVPSYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTAKT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            E        +      + ++   S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FEGLIQAGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 PTVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824


>gi|134302418|ref|YP_001122388.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|224456719|ref|ZP_03665192.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370164|ref|ZP_04986170.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033]
 gi|254874466|ref|ZP_05247176.1| DNA gyrase B [Francisella tularensis subsp. tularensis MA00-2987]
 gi|134050195|gb|ABO47266.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568408|gb|EDN34062.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033]
 gi|254840465|gb|EET18901.1| DNA gyrase B [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158808|gb|ADA78199.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 803

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/812 (52%), Positives = 551/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   GS  + TGT +TF PS +
Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LIDK +   R     Y GGI AFV YL+  K
Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKII +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L +YL N  L         +  VIS   L N+ +   K  K+
Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654
           IK +   + +  +        +  ES          K+    N  A   E+         
Sbjct: 594 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651

Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           G     +I   V     G    ++++ S   +   +    + + + +       +     
Sbjct: 652 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803


>gi|56707649|ref|YP_169545.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670120|ref|YP_666677.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis
           FSC198]
 gi|56604141|emb|CAG45143.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320453|emb|CAL08526.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 805

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/812 (52%), Positives = 551/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 3   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 60  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   GS  + TGT +TF PS +
Sbjct: 120 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LIDK +   R     Y GGI AFV YL+  K
Sbjct: 179 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 237 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 297 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKII +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 417 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 477 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L +YL N  L         +  VIS   L N+ +   K  K+
Sbjct: 537 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 595

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654
           IK +   + +  +        +  ES          K+    N  A   E+         
Sbjct: 596 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 653

Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           G     +I   V     G    ++++ S   +   +    + + + +       +     
Sbjct: 654 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 713

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 714 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 773

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 774 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 805


>gi|194099990|ref|YP_002003129.1| DNA gyrase subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|193935280|gb|ACF31104.1| DNA gyrase subunit B [Neisseria gonorrhoeae NCCP11945]
          Length = 871

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 76  MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 134

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 135 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 194

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL + G + +  GT V FL  ++
Sbjct: 195 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 253

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 254 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 311

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 312 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 371

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 372 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 431

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 432 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 491

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 492 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 551

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 552 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 611

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 612 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 669

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 670 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHQF 728

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++       
Sbjct: 729 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 787

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 788 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 847

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 848 MGDEVEPRRAFIENNALIAQNID 870


>gi|254374023|ref|ZP_04989505.1| hypothetical protein FTDG_00183 [Francisella novicida GA99-3548]
 gi|151571743|gb|EDN37397.1| hypothetical protein FTDG_00183 [Francisella novicida GA99-3548]
 gi|328676671|gb|AEB27541.1| DNA gyrase subunit B [Francisella cf. novicida Fx1]
          Length = 803

 Score =  893 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/812 (52%), Positives = 549/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   GS  + TGT +TF PS D
Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LIDK +   R     Y GGI AFV YL+  K
Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKII +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L +YL N  L         +  VIS   L N+ +   K  K+
Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK---SWHGSI 657
           IK +   + +  +        +  ES          K+    N  A   E+        I
Sbjct: 594 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651

Query: 658 NNSDIL-----VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                      V     G    ++++ S   +   +    + + + +       +     
Sbjct: 652 GEDGKETISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803


>gi|240118850|ref|ZP_04732912.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1]
          Length = 871

 Score =  893 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 76  MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 134

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 135 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 194

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL + G + +  GT V FL  ++
Sbjct: 195 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 253

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 254 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 311

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 312 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 371

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 372 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 431

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 432 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 491

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 492 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 551

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 552 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 611

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 612 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 669

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 670 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHRF 728

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++       
Sbjct: 729 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 787

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 788 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 847

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 848 MGDEVEPRRAFIENNALIAQNID 870


>gi|208778992|ref|ZP_03246338.1| DNA gyrase, B subunit [Francisella novicida FTG]
 gi|208744792|gb|EDZ91090.1| DNA gyrase, B subunit [Francisella novicida FTG]
          Length = 803

 Score =  893 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/812 (52%), Positives = 549/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   GS  + TGT +TF PS D
Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LIDK +   R     Y GGI AFV YL+  K
Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAITRTM 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKII +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L +YL N  L         +  VIS   L N+ +   K  K+
Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK---SWHGSI 657
           IK +   + +  +        +  ES          K+    N  A   E+        I
Sbjct: 594 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651

Query: 658 NNSDIL-----VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
                      V     G    ++++ S   +   +    + + + +       +     
Sbjct: 652 GEDGKETISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803


>gi|167589703|ref|ZP_02382091.1| DNA gyrase subunit B [Burkholderia ubonensis Bu]
          Length = 824

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/828 (47%), Positives = 539/828 (65%), Gaps = 29/828 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNTQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I V ++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  LAGYCNDIHVIIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P+ 
Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIETVDGVEVSPMQ 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           + G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 181 LIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV ++++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 238 DDFAFAGGVKGFVEFINKTKSTLHPTIFHVNGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  
Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDSELNAHMLRLALQGSELVPGENAT 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L    +I+     +D   +E AV+ GV    S +E   + A  L  
Sbjct: 598 AISGDALGELARSYLMSQSVIERLSRLYDPAALE-AVMDGVVIDLSSEESTEASAKALHA 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L+  A K+E      +        + V+R   G     V++     +   +     +N 
Sbjct: 657 ALHDEALKNEVRVVPSYDAVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTANT 716

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +        +      + +    S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 717 FKGLIGEGAVIKRGERSMAVGDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824


>gi|82701138|ref|YP_410704.1| DNA gyrase subunit B [Nitrosospira multiformis ATCC 25196]
 gi|82409203|gb|ABB73312.1| DNA gyrase subunit B [Nitrosospira multiformis ATCC 25196]
          Length = 810

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/804 (50%), Positives = 547/804 (68%), Gaps = 7/804 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            +  ++ Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L GY D
Sbjct: 11  KSKSSADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYCD 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            I+V ++ D S TV DNGRGIPT + +  E   SAAE++MT LHAGGKF+  SYKVSGGL
Sbjct: 71  EISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I+R+G I+++ F  G+   PL  TG      GTEV FL S +
Sbjct: 131 HGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVGPLATTGKTE-RRGTEVHFLASKE 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD    RLRELSFLN+ V+I LID+R+ +    T  + GG+++FV Y++R K
Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLIDQRNAKE--ETFAFVGGVKSFVEYVNRTK 247

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +     G +D I+++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR +
Sbjct: 248 SVLHPNIFYAAGEKDRIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+EKS  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE  V
Sbjct: 308 NNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIV 367

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +L EHP++AKII  K+++A+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+
Sbjct: 368 SLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA
Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITA 487

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PP
Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I  GK  +YVKD+  L+ YL+  +L+E      + K  ++   L N  ++ L  + +
Sbjct: 548 LYKIKHGKQERYVKDDHELKQYLLGLALTEAELHTGEGKSPLTGETLENIANEYLLAEAV 607

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D   +   +     +  S++E+    A +LA ++N         +  +    
Sbjct: 608 IERMSSLIDSEVMHALLRHSDIDL-SNEELATESAVRLAAQVNAPNITIVPKYDVATEEY 666

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            + + R+  G      ++   + S      R  +  ++        +     K  ++   
Sbjct: 667 RLKISRMHHGNVRYSYIDQDFLQSGDYAQIRQTAEVLDGLIGPAAYVQRGEKKQAVSDFK 726

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD +    +KGI  QRYKGLGEMN +QLWETT++P  R LLR +I D+  AD++F+ L
Sbjct: 727 QALDWLLEEVKKGIGTQRYKGLGEMNPAQLWETTMDPKVRLLLRAQIEDSIAADEIFTTL 786

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD VEPRR FI+ N+L    LD+
Sbjct: 787 MGDIVEPRRAFIENNALGVRNLDV 810


>gi|330806661|ref|YP_004351123.1| DNA gyrase subunit B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374769|gb|AEA66119.1| DNA gyrase subunit B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 792

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/793 (49%), Positives = 533/793 (67%), Gaps = 11/793 (1%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+ D I++ ++ D S TV 
Sbjct: 2   LKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVR 61

Query: 78  DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137
           DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L
Sbjct: 62  DNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEQLVL 121

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            ++R G I+E ++I+G+   P+ + G +   TGT++ F  SS+ F    F++D L  R+R
Sbjct: 122 TVRRSGKIWEQTYIHGVPQAPMAIVGDSE-STGTQIHFKASSETFKNIHFSWDILAKRIR 180

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           ELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ Q         D I
Sbjct: 181 ELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNVQREDGI 238

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+E+   +KK K + 
Sbjct: 239 GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVAT 298

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK+
Sbjct: 299 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKL 358

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGG
Sbjct: 359 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 418

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           SAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG++ ++I+KLRY
Sbjct: 419 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRY 478

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           H IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PPLY + +GK  QY+KD++
Sbjct: 479 HNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDD 538

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
           ++E+Y+   +L +      +    IS   L   ++D   + K +K     + +   E  +
Sbjct: 539 AMEEYMTQSALEDASLHLNEDAPGISGEALERLVNDFRLVMKTLKRLSRLYPQELTEHFI 598

Query: 618 ISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIARG 670
                + E   D        ++   RL  + +     K+        N     V+ I+ G
Sbjct: 599 YLPAVSLEQLSDYAAMQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWLPEVELISHG 658

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           +            S   K       ++         +     K  +T     L+ + +  
Sbjct: 659 LSNYVTFNRDFFGSNDYKTVVSLGAQLSTLLDEGAYIQRGERKKAVTEFKEALEWLMAES 718

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            K  ++QRYKGLGEMN  QLWETT++P +R +L+V I DA  AD +F+ LMGD VEPRR+
Sbjct: 719 TKRHTIQRYKGLGEMNPDQLWETTMDPGSRRMLKVTIEDAIGADQIFNTLMGDAVEPRRD 778

Query: 791 FIQENSLPS-ALD 802
           FI+ N+L    LD
Sbjct: 779 FIESNALAVSNLD 791


>gi|300021544|ref|YP_003754155.1| DNA gyrase subunit beta [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523365|gb|ADJ21834.1| DNA gyrase, B subunit [Hyphomicrobium denitrificans ATCC 51888]
          Length = 815

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/806 (55%), Positives = 573/806 (71%), Gaps = 9/806 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHMIYEV+DN IDE L G+A    
Sbjct: 11  EPDDYGADSIKMLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNGIDEVLAGHAKSCE 70

Query: 66  VTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           VTLN DGSCTV D+GRGIPT +     ++   SAAE++ T LHAGGKF+Q SYKVSGGLH
Sbjct: 71  VTLNPDGSCTVRDDGRGIPTGIKRDDDQDPKRSAAEIVFTELHAGGKFDQNSYKVSGGLH 130

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSSWLK RI R+G  + + F NG    PL V G A  + GTEV+FLPS++ 
Sbjct: 131 GVGVSVVNALSSWLKCRIWRDGKEHFVEFNNGNTVAPLKVVGDANGERGTEVSFLPSTET 190

Query: 182 FSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F    +F++ TL+HRLREL+FLNS  +I L D R  + +     Y+GG  AFV YLDR K
Sbjct: 191 FHNVTEFDFATLEHRLRELAFLNSGAKIVLTDARHADVKRQEFVYEGGTAAFVRYLDRSK 250

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +  PI I G +D I+++ A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALTR +
Sbjct: 251 SSALPDPIMILGEKDGITVEAALWWNDTYHETVLCFTNNIPQRDGGTHLAGFRSALTRIV 310

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y E++  +KK+K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V
Sbjct: 311 NKYAEETGLAKKEKVSLSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVKPVVESAV 370

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L AW EEHP EAK+IV K+++A++ R+AAR+ARDLTRRKG LD   LPG LA+C +R
Sbjct: 371 GDQLGAWFEEHPKEAKVIVGKIVEAALAREAARKARDLTRRKGALDGLRLPGGLAECQDR 430

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K+E+F+VEGDSAGGSAKQGR RE QA+LP+RGKILNVERAR DKMLSS+++  +I A
Sbjct: 431 DASKTEVFIVEGDSAGGSAKQGRKREFQAVLPIRGKILNVERARTDKMLSSEQVTNIIAA 490

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D F ++KLRYHK+IIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PP
Sbjct: 491 LGTGIGRDEFKLDKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMPELVDKGHVYIAQPP 550

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK+  Y+KDE +LEDYLI+Q L + +     S    +  DLR+ ++ A +I   
Sbjct: 551 LYKVARGKAQSYLKDERALEDYLIDQGLVDAVL-VTGSGTERAGRDLRDIVEQARQISGG 609

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSIN 658
           I   +  +++  +EQ  I G+FN    Q      + A+++A RL+ ++E+ E  W G   
Sbjct: 610 INGLHSRYNRNVVEQGAIGGIFNPAYLQSATEANAAAARVAKRLDDVSEEMETGWEGRFG 669

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           N   + KR  RGV E   L+ + + S  ++        + E Y     L        + G
Sbjct: 670 NDGFVFKREVRGVTEVHFLDRALLGSLDARRLNERHAHLVEVYDKPAKLKRKDKVEAVLG 729

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P SLL  ++  GRKGI +QRYKGLGEMN  QLWETTL+PD R+LL+VK+ D ++AD++F+
Sbjct: 730 PRSLLTAVYETGRKGIELQRYKGLGEMNPEQLWETTLDPDVRTLLQVKVGDLAEADEIFA 789

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           +LMGD VEPRREFIQEN+L    LD+
Sbjct: 790 KLMGDVVEPRREFIQENALNVSNLDV 815


>gi|261378453|ref|ZP_05983026.1| DNA gyrase, B subunit [Neisseria cinerea ATCC 14685]
 gi|269145238|gb|EEZ71656.1| DNA gyrase, B subunit [Neisseria cinerea ATCC 14685]
          Length = 796

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/803 (49%), Positives = 533/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSNWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +      V+   DL +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGKVLEGKDLESAAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I       D   ++  + +   +  S    + ++A+ L+  L+      E+   G   N 
Sbjct: 595 IGQESRIIDDLVLKAMLYAEPVDLSSADSTDRAIAN-LSALLDEKEVVLER-VEGHEGNR 652

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++       +L     +  +    
Sbjct: 653 FIKITRKLHGNVMTSYLESKFLNSKAYQTIVQTAAALKGLVAAGSTLFKGETEYPVGSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD +    +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 EALDILLQNVQKGMSIQRYKGLGEMNPEQLWETTMDPSVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|118602063|ref|YP_903278.1| DNA gyrase subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567002|gb|ABL01807.1| DNA gyrase subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 802

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/804 (50%), Positives = 560/804 (69%), Gaps = 7/804 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  Q+  Y A SI+ILKGLDAV+KRP MYIGDTD  +GLHHMI+EV+DNAIDE+L G+
Sbjct: 1   MSEK-QSQEYQASSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMIFEVVDNAIDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +TL+ D S +V+DNGRGIP D+H +EGISAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CSKINITLHEDLSISVNDNGRGIPVDIHPKEGISAAEVIMTMLHAGGKFDDNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS W++L + R G IY   +  G+ + P+ V G + + TGT + F P+ D
Sbjct: 120 HGVGISVVNALSEWVELTVYRNGKIYFQHYNIGVPNEPIKVIGKS-DKTGTTIHFKPNVD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS+ +F YD L +R+RELSFLN  V I + +  + +       YKGGI+ FV YL++ K
Sbjct: 179 IFSITEFKYDILVNRIRELSFLNLGVHIQVKELSTGKK--DFFKYKGGIKEFVRYLNKAK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+  + I I   RD+I I++A++W+D Y EN+ CFTNNIPQK GG HL+G R ALTR  
Sbjct: 237 NPIFNNIITINAQRDDIEINVALQWSDSYQENIYCFTNNIPQKYGGGHLAGFRGALTRTF 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+  S  +KK+K S+ G+D REG T+++SIK+P+P+FSSQTK+KLVSSEVR+ VES +
Sbjct: 297 NNYINNSSIAKKEKISITGEDTREGLTAIISIKIPNPKFSSQTKDKLVSSEVRAPVESAL 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ LS +L E+P+EAKII++K+LDAS  R+AAR+AR++ RRKG+L+IA LPGKL+DC  +
Sbjct: 357 NEKLSDYLLENPIEAKIIIRKILDASHARNAARKAREIIRRKGMLNIADLPGKLSDCQTK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP KSE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ RF+K+LSS E+GTLITA
Sbjct: 417 DPTKSEIFLVEGDSAGGSAKQGRDRHTQAILPLKGKILNVEKVRFEKILSSIEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ +DI KLRYHKI+IMTDADVDGAHIRTLLLTFF+R +P LI NG+LYI +PP
Sbjct: 477 LGCGIGKEEYDITKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLPELIENGYLYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I +GK   Y+KD + L DYL+ +++++           IS   L + + +  KI+ +
Sbjct: 537 LYKIKKGKQECYLKDNQELNDYLLQEAINDAYFFLSKETPAISGMALESLVKEYYKINTI 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHGSINN 659
           I   Y  ++   ++    S   +  ++Q+   +  + L  +LN     ++K     +  +
Sbjct: 597 IDKLYKRYNLALLKVIASSTPIDDLTNQKNMNTWCANLTEKLNKDITPAQKHIVTFNAIS 656

Query: 660 SDILVKRIARGVQEQF-VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +++       GV  +   L  +   S   +  + FS +IE        +     ++K+  
Sbjct: 657 NEVEHTLCVYGVNTEHKTLNAAFFSSLDYQAIKDFSKKIESMITQESYIEKKNKQVKVDR 716

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              ++D +    +KG S QRYKGLGEMN  QLWETT++P+ R+LL+VKI D+  A+++FS
Sbjct: 717 FSHVVDFLIKDAKKGQSFQRYKGLGEMNPEQLWETTMDPEQRTLLKVKIEDSIVANEVFS 776

Query: 779 RLMGDEVEPRREFIQENSLPS-AL 801
            LMGD+VEPRR FI+ N+L    L
Sbjct: 777 TLMGDKVEPRRNFIENNALLVDNL 800


>gi|187932024|ref|YP_001892009.1| DNA gyrase, B subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712933|gb|ACD31230.1| DNA gyrase, B subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 803

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/812 (52%), Positives = 552/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDSSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   GS  ++TGT +TF PS +
Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DETGTLITFKPSKE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LIDK +   R     Y GGI AFV YL+  K
Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKII +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L +YL N  L         +  VIS   L N+ +   K  K+
Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654
           IK +   + +  +        +  ES          K+    N  A   E+         
Sbjct: 594 IKKYTKTYPEKLLRIMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651

Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           G     +I   V     G    ++++ S   +   +    + + + +       +     
Sbjct: 652 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVAYGDVLSDISFEGAYVERGAK 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803


>gi|329118645|ref|ZP_08247349.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465380|gb|EGF11661.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 796

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/803 (49%), Positives = 530/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MAEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +VSDNGRG+PT +H +EGISAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKINVTIHADNSVSVSDNGRGMPTGIHPKEGISAAEVIMTILHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + FI G  + PL V G + +  GT V FL S +
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFIRGASEKPLAVVGDS-DKKGTTVRFLASEE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NRALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I            L    +
Sbjct: 537 LYKAKYGKQERYLKDEFEKDQWLLGLALEKAKIV--SDGRTIEGELFAAAAKQFLLAKSV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D   ++  + +   +   +     ++A  L+  L+      E+   GS    
Sbjct: 595 IEQESRVIDDLVLKAMLYAAPIDLSGEDSTAQAIAE-LSALLDEKEVALEQ-VEGSEGGH 652

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++    +   L    ++  I+   
Sbjct: 653 FIKITRKLHGNVMVSYIEPKFLNSKAYQTITQTAAALKGLVGSNAKLYKGDNEYDISSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             L+ +    +KG+++QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 DALEILLQTAQKGMAIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|302877248|ref|YP_003845812.1| DNA gyrase, B subunit [Gallionella capsiferriformans ES-2]
 gi|302580037|gb|ADL54048.1| DNA gyrase, B subunit [Gallionella capsiferriformans ES-2]
          Length = 792

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/797 (49%), Positives = 529/797 (66%), Gaps = 7/797 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S YD+ SI++LKGL+AV+KRP MYIGDT+  +GLHHM++E +DNA+DE+L G+ + I V 
Sbjct: 2   SEYDSTSIKVLKGLEAVRKRPGMYIGDTNDGTGLHHMVFEAVDNAVDEALAGHCNEINVI 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +VSDNGRGIPTD+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 62  IHADNSISVSDNGRGIPTDIHKEEGRSAAEVIMTILHAGGKFDSNSYKVSGGLHGVGVSV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WLKL I REG  + M F +G    PL V G +    GT V FL + + F + +F
Sbjct: 122 VNALSEWLKLTIYREGKEHFMEFRHGDPVAPLKVIGESKKK-GTVVHFLAAKETFGLIEF 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++D L  RLRELSFLN+ V+I+LID R+ +       + GGI+ FV Y++R+K  L  + 
Sbjct: 181 HFDILAKRLRELSFLNNGVKIALIDHRNGKE--ENFSFTGGIKGFVDYMNRNKTALHPTV 238

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
               G +D ++ ++AM+WND Y E+V CFTNNIPQ+DGGTHL+ +R+A+TR + +Y+E  
Sbjct: 239 FHAIGEKDGMTAEIAMQWNDTYQESVQCFTNNIPQRDGGTHLTAMRAAMTRTLNNYIEAE 298

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K    GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEVR V+E  +   +SA+
Sbjct: 299 QLAKKAKVEPTGDDMREGLTAVLSVKLPDPKFSSQTKDKLVSSEVRPVIEELIGQQMSAF 358

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E P +AKIIV K+++A+  R+AAR+ARDLTRRKGVLD   LPGKLADC E+DP  SEL
Sbjct: 359 LLERPNDAKIIVGKIIEAARAREAARKARDLTRRKGVLDGMGLPGKLADCQEKDPALSEL 418

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           +LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+K++SSQEI TLIT LGTGIG+
Sbjct: 419 YLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKLISSQEIATLITVLGTGIGK 478

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+  G +YI +PPLY I +G
Sbjct: 479 DEYNADKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKQG 538

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           +  +Y+KD+  ++ YL+  +L +           I    L          + +I      
Sbjct: 539 REERYLKDDLEMKSYLLGNALKDASLYSALDAAPIQGETLEQIAKQYFLAEAVIDRLTHF 598

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667
                    +I    + +   E   S     +     I    E    G +    + ++++
Sbjct: 599 IAPEASHALLILPTLSLDDATEAQKSAQLLESASGGVIKVTVEDDEQGEL---RLRLEKL 655

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G      L+   +     K  R  ++ ++        +     K  +      ++ + 
Sbjct: 656 YYGNYSISFLDKDFLQGGDYKQIRQTADALDGLMSPTAYVTRGEQKRGVASFKQAIEWLL 715

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
              ++G+S+QRYKGLGEMN  QLWETT+    R LL+V+I D   AD++F+ LMGD VEP
Sbjct: 716 EEAKRGLSIQRYKGLGEMNPEQLWETTMFVKNRILLKVRIEDTIAADEVFTTLMGDLVEP 775

Query: 788 RREFIQENSLPS-ALDI 803
           RR FI++N+L +  LD+
Sbjct: 776 RRAFIEKNALGAKNLDV 792


>gi|294668663|ref|ZP_06733759.1| DNA gyrase, B subunit [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291309425|gb|EFE50668.1| DNA gyrase, B subunit [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 796

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/803 (49%), Positives = 535/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTDQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLRVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I LID+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELIDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      N  
Sbjct: 595 IEQESRFVDELVLRAMLHASPVDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGNRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++  +    
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGERAKLYKGENEYDVDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + L+ +    +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALNILLQTAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|296105501|ref|YP_003617201.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Legionella pneumophila 2300/99 Alcoy]
 gi|295647402|gb|ADG23249.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Legionella pneumophila 2300/99 Alcoy]
 gi|307608754|emb|CBW98136.1| DNA gyrase, subunit B [Legionella pneumophila 130b]
          Length = 779

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/782 (50%), Positives = 527/782 (67%), Gaps = 11/782 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  +GLHHM++EV+DN+IDESL GY   I VT++ D S TV D+GRGIP D+HK
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEIFVTIHSDESITVKDDGRGIPVDIHK 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G +YE  
Sbjct: 61  EEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLVRRHGKVYEQH 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G+ ++P+  TG + N TGT++ F PS++ FS  +F+YD L  RLRELS+LNS V I 
Sbjct: 121 YRHGVPESPIAETGES-NSTGTQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIH 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+R+ +    T  Y+GGI+AFV +L+++K P+      +   +D I I+LAM+WNDGY
Sbjct: 180 LFDERTQKK--DTFHYEGGIKAFVEHLNKNKTPVHPVVFSMTSEKDGIVIELAMQWNDGY 237

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E + CFTNNIPQ+DGGTH++G R+ALTR + +Y+E    +KK K S  GDD REG T+V
Sbjct: 238 QETIFCFTNNIPQRDGGTHMAGFRAALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAV 297

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           LS+K+PDP+FSSQTK+KLVSSEV+  VES V +  + +L E+P  AK IV K++DA+  R
Sbjct: 298 LSVKVPDPKFSSQTKDKLVSSEVKPAVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAR 357

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           +AARRAR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQ R R+ QA
Sbjct: 358 EAARRAREMTRRKGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQA 417

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG + +D +K+RYH+IIIMTDADVD
Sbjct: 418 ILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVD 477

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G+HIRTLLLTFF+RQ   L+  G++YI +PPLY + RGK  QYVKD+E+L DYL   +L 
Sbjct: 478 GSHIRTLLLTFFYRQTRELLERGYIYIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALD 537

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
                       IS   L   +    +++K+IK +   +    +++     + + E    
Sbjct: 538 GATFYPAKEAPPISAKSLEELVQHFRRVEKIIKRYKRRYPSDILKRVAYMPMLHQEDFNN 597

Query: 630 IN--VSLASKLANRLNFIAEKSEKSWHG-----SINNSDILVKRIARGVQEQFVLEGSSI 682
           ++   S   +L   L  +  K+E+           N     +     G++    ++    
Sbjct: 598 LSKIESWCRQLHLSLQQVDSKTEQYKVDIQKLTEGNQYTPKITVYQHGLENDIPMQVEFF 657

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742
            S   K      +++         +      + +     +L+ +    +KG ++QRYKGL
Sbjct: 658 LSKDYKEMVDLGHKLSNLIEEGAYIQRGDKSLPVENFEQVLNWLMDEAKKGQTIQRYKGL 717

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801
           GEMN  QLWETT++P+ R +L+V I DA  AD++F+ LMGD VEPRR+FI+ N+L +  +
Sbjct: 718 GEMNPEQLWETTMDPEVRRMLQVSIEDAVAADEIFTTLMGDNVEPRRDFIETNALDAENI 777

Query: 802 DI 803
           DI
Sbjct: 778 DI 779


>gi|261391746|emb|CAX49196.1| DNA gyrase subunit B [Neisseria meningitidis 8013]
          Length = 796

 Score =  892 bits (2304), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/803 (49%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L N     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  + +  + S+A  L   L+      E+      +  
Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRSVAE-LNGLLDEKEVALERIEGHEGHQF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++        L    ++  I    
Sbjct: 654 -IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|326386061|ref|ZP_08207685.1| DNA gyrase subunit B [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209286|gb|EGD60079.1| DNA gyrase subunit B [Novosphingobium nitrogenifigens DSM 19370]
          Length = 840

 Score =  892 bits (2304), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/845 (53%), Positives = 581/845 (68%), Gaps = 47/845 (5%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+        +SY ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+L
Sbjct: 1   MATGDITPNANSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKS 113
            G+ D++ + +N DGS +V DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF    +  +
Sbjct: 61  AGHCDLVLIEINPDGSVSVEDNGRGIPTDIHSEEGVSAAEVIMTQLHAGGKFENTSDDNA 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-----ND 168
           YKVSGGLHGVGVSVVNALS WL+L I REG  + M F +G    PL+V G A        
Sbjct: 121 YKVSGGLHGVGVSVVNALSEWLELTIWREGKEHWMRFAHGDPVAPLIVRGEAPIVGGKPK 180

Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GT VTF  S + F    ++++D L+HR REL+FLNS V+I L DKR  E +E  ++Y+G
Sbjct: 181 KGTRVTFFASHETFKNVTEYDFDKLEHRYRELAFLNSGVRILLRDKRREEVKEHDLYYEG 240

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI AFV YLDR+K PL+  PI I   RD I ID+A++WND Y+ENVLCFTNNIPQ+DGGT
Sbjct: 241 GIGAFVKYLDRNKLPLIPDPIAISADRDGIGIDVALQWNDSYYENVLCFTNNIPQRDGGT 300

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+  R+ALTR I  Y E+S   KK+K ++ GDD REG T+++S+K+PDP+FSSQTK+KL
Sbjct: 301 HLAAFRAALTRTINGYAERSGLLKKEKVALSGDDMREGLTAIVSVKLPDPKFSSQTKDKL 360

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEVR  +ES + D ++ WLEE+P  A+ +++KV+DA+  R+AAR+AR+LTRRKG +DI
Sbjct: 361 VSSEVRQPLESLMADKMNEWLEENPAHARSVIQKVIDAAAAREAARKARELTRRKGAMDI 420

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKLADC ERDP K ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+
Sbjct: 421 ASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 480

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           ++SS+E+GTLI A+GTGI +D F+++KLRYHKI+IMTDADVDGAHIRTLLLTFF RQ+P 
Sbjct: 481 IISSKEVGTLIQAMGTGI-RDEFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQLPE 539

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           ++  G L+I +PPLY + +G+S  Y+KD  +L++YL+   LS  +     S G    +DL
Sbjct: 540 IVKQGHLFIAQPPLYKVAKGRSEVYLKDNAALDNYLVEAGLSGRVLE--SSGGARMGSDL 597

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
           R  +D ALK+  L+      ++ + IE   ++G  + E D     +  ++ A  LN    
Sbjct: 598 RALVDHALKLRDLMAFVPRRYNPSIIEALALAGALDPELDTPGREAALARTAEWLNRG-- 655

Query: 648 KSEKSWH-GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
             E  W  G        ++R+ RGV +  V+EG  + S  ++     +    + Y     
Sbjct: 656 DPEARWSAGIAAEGGYHIQRLWRGVTDHHVIEGGFLVSQEARKLARLAAENADVYAGTAR 715

Query: 707 L-------------------------ICNGDKIK--ITGPCSLLDTIFSIGRKGISMQRY 739
           L                            GD     IT P  L++ +F+ GRKG+S+QRY
Sbjct: 716 LARAGSAPAEPVETTPAAEEEETAPATRRGDSSAEIITRPSQLVEAVFATGRKGLSIQRY 775

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA QLWETTL+PD R LL+VKI DA   D++ +RLMGD VEPRREFIQEN+L  
Sbjct: 776 KGLGEMNAEQLWETTLDPDNRLLLQVKIEDADVTDEILTRLMGDVVEPRREFIQENALNV 835

Query: 800 -ALDI 803
             LD+
Sbjct: 836 ANLDV 840


>gi|209515895|ref|ZP_03264757.1| DNA gyrase, B subunit [Burkholderia sp. H160]
 gi|209503743|gb|EEA03737.1| DNA gyrase, B subunit [Burkholderia sp. H160]
          Length = 823

 Score =  892 bits (2304), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/825 (47%), Positives = 544/825 (65%), Gaps = 27/825 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   ++SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L G+
Sbjct: 4   MNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGH 63

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
            + I V ++ D S +++DNGRG+PT     D H +   SAAE++MT LHAGGKF+Q SYK
Sbjct: 64  CNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-DPKRSAAEIVMTELHAGGKFDQNSYK 122

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163
           VSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+              +P+ V G
Sbjct: 123 VSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEVNGVTTSPMQVIG 182

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
               + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L+D+RS +      
Sbjct: 183 DTE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE--EDF 239

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            + GG++ FV Y++++K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+
Sbjct: 240 AFVGGVKGFVEYINKNKSVLHPNIFHIMGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQR 299

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+FSSQT
Sbjct: 300 DGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQT 359

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++TRRKG
Sbjct: 360 KDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVDAARARDAARKAREMTRRKG 419

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+A
Sbjct: 420 VLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 479

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+R
Sbjct: 480 RYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYR 539

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           QMP +I  G++YI +PPLY I  GK  +Y+KDE  +  +++  +L     +  +    I+
Sbjct: 540 QMPEMIERGYIYIAQPPLYKIKAGKDERYLKDESEVNAHILRLALQGSELVASEGATPIT 599

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            + L       L    ++      +D   +E AV+ GV    S ++   + A  L  +L 
Sbjct: 600 GDALGELARSYLLAQAVVDRLSRLYDAGALE-AVMDGVAVDLSSEQAAEASARALEAKLR 658

Query: 644 FIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
             A K + +    +        + V R   G Q+  VL+     +   +     +N  + 
Sbjct: 659 DDALKPDVTVTTMYDPVRELRSLRVARTHHGNQKISVLDEEFQLTADYQQLVNTANTFKG 718

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
                  +      + +T   S +  + +   + +S QRYKGLGEMN  QLWETT++P  
Sbjct: 719 LIGAGAVIKRGERSMAVTDFKSAMKWLLADAERNMSKQRYKGLGEMNPEQLWETTMDPQV 778

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 779 RRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823


>gi|325202956|gb|ADY98410.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240149]
 gi|325207246|gb|ADZ02698.1| DNA gyrase, B subunit [Neisseria meningitidis NZ-05/33]
          Length = 796

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/803 (49%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L N     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  + +  + S+A  L   L+      E+      +  
Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRSVAE-LNGLLDEKEVALERIEGHEGHQF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++        L    ++  I    
Sbjct: 654 -IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|325143186|gb|EGC65528.1| DNA gyrase, B subunit [Neisseria meningitidis 961-5945]
 gi|325197495|gb|ADY92951.1| DNA gyrase, B subunit [Neisseria meningitidis G2136]
          Length = 796

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/803 (49%), Positives = 533/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L N     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  + +  + S+A  L+  L+      E+      +  
Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRSVAE-LSGLLDEKEVALERIEGHEGHQF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++        L    ++  I    
Sbjct: 654 -IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|325205300|gb|ADZ00753.1| DNA gyrase, B subunit [Neisseria meningitidis M04-240196]
          Length = 796

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/803 (49%), Positives = 531/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L N     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  + +  + S+A  L   L+      E+      +  
Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRSVAE-LNGLLDEKEVALERIEGHEGHQF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++        L    ++  I    
Sbjct: 654 -IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|87201322|ref|YP_498579.1| DNA gyrase subunit B [Novosphingobium aromaticivorans DSM 12444]
 gi|87137003|gb|ABD27745.1| DNA gyrase subunit B [Novosphingobium aromaticivorans DSM 12444]
          Length = 835

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/834 (53%), Positives = 583/834 (69%), Gaps = 38/834 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +    +SY ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+L G+ D
Sbjct: 7   NTPNTNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCD 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKVSG 118
           ++ + LN DGS +V DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF    +  +YKVSG
Sbjct: 67  LVLIELNPDGSVSVEDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSG 126

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLP 177
           GLHGVGVSVVNALS WL+L I R+G  + M F +G  + PLVV G A     GT VTF  
Sbjct: 127 GLHGVGVSVVNALSEWLELTIWRDGKEHWMRFAHGDAEGPLVVRGPAPEGKKGTRVTFQA 186

Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S + F    +F++D L+HR REL+FLNS V+I L DKR  E +E  +FY+GGI AFV YL
Sbjct: 187 SHETFKNVLEFDFDKLEHRYRELAFLNSGVRILLRDKRHEEIKEHDLFYEGGIAAFVKYL 246

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+K+PLM  P+ I  +RD I ID+A+ WND Y+ENVLCFTNNIPQ+DGGTHL+  R+AL
Sbjct: 247 DRNKQPLMPEPVAISANRDGIGIDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAFRAAL 306

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y E+S   KK+K S+ GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR  +
Sbjct: 307 TRTLNGYAERSGMLKKEKVSLTGDDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQPL 366

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES + D +  WLEE+P  AK I++KV+DA+  R+AA+RAR+LTRRKG +DIASLPGKLAD
Sbjct: 367 ESLMADKMVEWLEENPGHAKSIIQKVIDAAAAREAAKRARELTRRKGAMDIASLPGKLAD 426

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP K ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+++SS+E+GT
Sbjct: 427 CQERDPAKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDRIISSKEVGT 486

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI A+GTG+ +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF RQMP +I  G L+I
Sbjct: 487 LIQAMGTGL-RDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMPEIIKAGHLFI 545

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G+S  Y+KD  +++ YL+   LS  +     S G  S  DL   ++ AL+
Sbjct: 546 AQPPLYKVAKGRSEVYLKDNAAMDRYLVEAGLSGRVLE--TSGGARSGTDLEALVEHALR 603

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
           +  L+      ++   IE   ++G    +   E   +   + A+ LN     +E  W  +
Sbjct: 604 MRNLMAFVPRRYNPAIIEALALAGALEPDMTVEARDAALLRAADWLNRG--DTEARWTVT 661

Query: 657 I-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC------ 709
           +       V+R+ RGV +  ++E   + S  ++     +    E Y  +  L+       
Sbjct: 662 LAEEGGYHVQRMWRGVTDHHMIEAGFLVSAEARKLAKLAAENAEVYAGMARLVRATAAAS 721

Query: 710 ----------NGD---------KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
                     +G+         K  IT P  LL+ +F+ GRKG+S+QRYKGLGEMNA QL
Sbjct: 722 EADAAPAADDDGEVPAAPTVQHKDAITRPSELLEMVFAGGRKGLSIQRYKGLGEMNAEQL 781

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           WETTL+PD RSLL+VK+ DA   D++F+RLMGD VEPRR+FIQEN+L    LD+
Sbjct: 782 WETTLDPDNRSLLQVKVEDADVTDEIFTRLMGDVVEPRRDFIQENALNVANLDV 835


>gi|30248034|ref|NP_840104.1| DNA gyrase subunit B [Nitrosomonas europaea ATCC 19718]
 gi|30179919|emb|CAD83914.1| DNA gyrase, subunit B:DNA topoisomerase II gyrB [Nitrosomonas
           europaea ATCC 19718]
          Length = 809

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/807 (50%), Positives = 539/807 (66%), Gaps = 11/807 (1%)

Query: 2   SDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           +    NS   Y++DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EV+DNAIDE+L G
Sbjct: 9   AKKTDNSHRDYNSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAG 68

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           Y D I+V ++ D S ++ DNGRGIPTD+ +  E   SAAE++MT LHAGGKF+  SYKVS
Sbjct: 69  YCDDISVIIHADNSVSIHDNGRGIPTDIKQDDELKRSAAEIVMTELHAGGKFDDNSYKVS 128

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+L I+R GN+Y+M F  G+   PL VTG      GTEV FL 
Sbjct: 129 GGLHGVGVSVVNALSEWLRLTIRRNGNVYQMEFREGVAVAPLKVTGQTE-KHGTEVHFLA 187

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S  +F    ++YD    RLRELSFLN  ++I L D+R  + RE    + GGI  FV Y++
Sbjct: 188 SQSVFGDITYHYDIFAKRLRELSFLNHGIKIRLADQR--DDREEVFAFTGGIRNFVEYIN 245

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R K  L  S    +G +DNI++++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+T
Sbjct: 246 RSKTVLHPSIFYAKGLKDNITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMT 305

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+EK+  +KK K    GDD REG T VLS+K+ +P+FSSQTKEKLVSSEVR  VE
Sbjct: 306 RTLNNYIEKNELAKKAKVDTTGDDMREGITCVLSVKLFEPKFSSQTKEKLVSSEVRPAVE 365

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V   LS +L E+P EAK I  K+++A+  R+AAR+AR+LTRRKGVLD   LPGKLADC
Sbjct: 366 EIVVQKLSDFLLENPNEAKTICNKIIEAARAREAARKARELTRRKGVLDSMGLPGKLADC 425

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DPK  EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++SSQEI +L
Sbjct: 426 QEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLISSQEIVSL 485

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI 
Sbjct: 486 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIA 545

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY I  GK  +Y+KD+  L+ Y++  +L         +   I+   L    D+ L  
Sbjct: 546 QPPLYKIKHGKQERYLKDDYELKHYILGLALVGAELHTGANNPPITGEALARIADEYLLA 605

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
           + +I+      D+T +   +     +  S +      A++LA  L+ +   +E  +  + 
Sbjct: 606 ETVIERMSRLIDRTVMYALLKQPDIDL-SSETSARDSAARLAILLDDVEILAE--YDENF 662

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
               + + R   G      L+   + S      R  +  +         +     +I + 
Sbjct: 663 ERYRLKIIRKQHGNLRTSYLDDDFLQSGDFARIRQAAQILHGLIGEGAKVKRGEQEISVR 722

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +    +KGI++QRYKGLGEMN  QLWETT++P  R LLR +I D+   D++F
Sbjct: 723 EFKEALEWLLEETKKGITIQRYKGLGEMNPEQLWETTMDPGNRRLLRAQIEDSILTDEIF 782

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMGD VEPRR FI+ N+L +  +DI
Sbjct: 783 TTLMGDVVEPRRAFIESNALRARNIDI 809


>gi|295675104|ref|YP_003603628.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1002]
 gi|295434947|gb|ADG14117.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1002]
          Length = 823

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/825 (47%), Positives = 544/825 (65%), Gaps = 27/825 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   ++SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L G+
Sbjct: 4   MNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGH 63

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
            + I V ++ D S +++DNGRG+PT     D H +   SAAE++MT LHAGGKF+Q SYK
Sbjct: 64  CNDIQVIIHADNSVSITDNGRGVPTGLKMDDKH-DPKRSAAEIVMTELHAGGKFDQNSYK 122

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163
           VSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+              +P+ V G
Sbjct: 123 VSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVVTSPMPVIG 182

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
               + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L+D+RS +      
Sbjct: 183 DTE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE--EDF 239

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            + GG++ FV Y++++K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+
Sbjct: 240 AFVGGVKGFVEYINKNKSVLHPNIFHIMGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQR 299

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+FSSQT
Sbjct: 300 DGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQT 359

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++TRRKG
Sbjct: 360 KDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVDAARARDAARKAREMTRRKG 419

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+A
Sbjct: 420 VLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 479

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+R
Sbjct: 480 RYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYR 539

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           QMP +I  G++YI +PPLY I  GK  +Y+KDE  +  +++  +L     +  +    I+
Sbjct: 540 QMPEMIERGYIYIAQPPLYKIKAGKDERYLKDESEVNAHILRLALQGSELVASEGATPIT 599

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            + L       L    ++      +D   +E AV+ GV    S ++   + A  L  +L 
Sbjct: 600 GDALGELARSYLLAQAVVDRLSRLYDAGALE-AVMDGVAVDLSSEQAAEASARALEAKLR 658

Query: 644 FIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
             A K + +    +        + V R   G Q+  V++     +   +     +N  + 
Sbjct: 659 DDALKPDVTVSTMYDPVRELRSLRVARTHHGNQKISVIDEEFQLTADYQQLVNTANTFKG 718

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
                  +      + +T   S +  + +   + +S QRYKGLGEMN  QLWETT++P  
Sbjct: 719 LIGAGAVIKRGERSMAVTDFKSAMKWLLADAERNMSKQRYKGLGEMNPEQLWETTMDPQV 778

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 779 RRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823


>gi|46200851|ref|ZP_00207872.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 816

 Score =  890 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/800 (54%), Positives = 563/800 (70%), Gaps = 6/800 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A SIQ+L+GL+AV+KRP MYIGDTD  SGLH MIYE +DNA+DE + G+ D   V 
Sbjct: 19  EEYGAGSIQVLRGLEAVRKRPGMYIGDTDDGSGLHRMIYEAVDNAVDEIMNGFGDRCDVV 78

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS  V+DNGRGIP D+H EEGISAAEV +T+LHAGGKF Q S ++S GLHGVG+SV
Sbjct: 79  LNADGSVLVTDNGRGIPVDIHPEEGISAAEVALTKLHAGGKFEQNSNRISSGLHGVGISV 138

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL+LRI R G  + M F +G  + PL V G  G  TGT+V F PS   FS  +F
Sbjct: 139 VNALSEWLELRIWRHGKEHFMRFRHGEPEAPLAVVGECGTRTGTQVVFFPSKGTFSHTEF 198

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++DT++HRLREL+FLN    ++L D+R  E RE  + Y+GG++AFV +LDR K+ L    
Sbjct: 199 DFDTVEHRLRELAFLNWRATLTLKDERHAETREAVLHYEGGVQAFVQWLDRSKEALHAPI 258

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + +   RD + ++L+M W D YHE  LCFTNN+PQKDGGTHL+G R+ALTR + +Y   S
Sbjct: 259 L-VAAERDVVRLELSMEWTDSYHETCLCFTNNVPQKDGGTHLAGFRAALTRTVNAYANDS 317

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK+K ++ GDD REG T VLSIKMPDP+FSSQ KEKLVSSEVR +VE+ V + L+ W
Sbjct: 318 GIAKKEKVNLAGDDMREGLTCVLSIKMPDPKFSSQAKEKLVSSEVRPLVENLVGEKLAEW 377

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EEHP EA+ IV KV++A+  R+AAR+AR+LTRRKGVLDIA+LPGKLADC ERDP  SEL
Sbjct: 378 FEEHPSEARKIVTKVVEAAAAREAARKARELTRRKGVLDIATLPGKLADCQERDPALSEL 437

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR+R NQAILPL+GKILNVERARFDKMLSS EIGTLI A+GTGIG+
Sbjct: 438 FIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKMLSSAEIGTLIAAMGTGIGR 497

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           + F+++K RYHKIIIMTDADVDG+HIRTLLLTFF+RQMP+LI  G+LYI +PPLY   RG
Sbjct: 498 EDFNVDKARYHKIIIMTDADVDGSHIRTLLLTFFYRQMPALIERGYLYIAQPPLYRAKRG 557

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           +S  Y+KD+ +LE+YLI+  L++ +    D   V S  DLR  ++ A  +  L+      
Sbjct: 558 QSEVYLKDDRALEEYLIDGGLADAVLRMADGTQVAS-IDLRALVEQARSVRNLLTPLTRR 616

Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGS-INNSDILV 664
                +EQA I+   +     +     ++A  LA RL+ +    E+ W G+ +       
Sbjct: 617 LPLKLVEQAAIADALDSTVLTDATRGPAIAEALAKRLDALETHLERGWTGTWVEGDGYSF 676

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
            R  RGV E   L+ + I S  ++     + R+ E +    +L     +  ++GP +L+ 
Sbjct: 677 SRTLRGVTETHHLDSAVIRSAEARRLHELAPRLRETFDRPAALQVKERETVLSGPVALVT 736

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +   GR+GI++QRYKGLGEMN  QLWETTL+P  RSLL+VK+  A  A+ +FS LMGD 
Sbjct: 737 AVMEQGRRGIAIQRYKGLGEMNPEQLWETTLDPQARSLLQVKVAQADDAEQVFSTLMGDV 796

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRREFIQ N+L    LD+
Sbjct: 797 VEPRREFIQTNALKVSNLDV 816


>gi|325129012|gb|EGC51862.1| DNA gyrase, B subunit [Neisseria meningitidis N1568]
          Length = 796

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/803 (49%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +      V+   DL +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGKVLEGKDLESAAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I       D   ++  + +   +  S    + ++A+ L+  L+      E+   G   N 
Sbjct: 595 IGQESRIIDDLVLKAMLYAEPVDLSSADSTDRAIAN-LSALLDEKEVVLER-VEGHEGNR 652

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++       +L     +  +    
Sbjct: 653 FIKITRKLHGNVMTSYLESKFLNSKAYQTIVQTATVLKGLVAAGSTLFKGETEYPVGSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD +    +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 EALDILLQNVQKGMSIQRYKGLGEMNPEQLWETTMDPSVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|294010033|ref|YP_003543493.1| DNA gyrase subunit B [Sphingobium japonicum UT26S]
 gi|292673363|dbj|BAI94881.1| DNA gyrase subunit B [Sphingobium japonicum UT26S]
          Length = 835

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/840 (54%), Positives = 593/840 (70%), Gaps = 42/840 (5%)

Query: 1   MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+  QN+    +Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+
Sbjct: 1   MSEESQNNPNSNAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQK 112
           L G+ D I +TLN DGS +V DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF    +  
Sbjct: 61  LAGHCDRILITLNPDGSVSVEDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFENTSDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGT 171
           +YKVSGGLHGVGVSVVNALS +L L I R+G  + M F  G    PL V G A     GT
Sbjct: 121 AYKVSGGLHGVGVSVVNALSEYLDLNIWRDGKEHYMRFAYGDAVAPLKVIGDAPEGKKGT 180

Query: 172 EVTFLPSSDIFS--------VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           +VTFLPS++             +F+++ L+HR REL+FLNS V++ L D R  E +EI +
Sbjct: 181 KVTFLPSTEKVPGDGGTFKNHTEFDFEKLEHRYRELAFLNSGVRLFLADARHEEKKEIEL 240

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           FY+GGI AFV +LDR+K+PLM  PI I GSRD+++ID+A+ WND Y+ENVLCFTNNIPQ+
Sbjct: 241 FYEGGIAAFVKWLDRNKQPLMPDPIAISGSRDDVTIDVALEWNDSYYENVLCFTNNIPQR 300

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+  R+ALTR + +Y +KS   KK+K S+ G+D REG T+++S+K+PDP+FSSQT
Sbjct: 301 DGGTHLAAFRAALTRTLNNYADKSGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQT 360

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR  +ES + D ++ WLEE+P   ++IV+KV+DA+  R+AA++AR+LTRRKG
Sbjct: 361 KDKLVSSEVRQPLESLMADKMAEWLEENPQHGRMIVQKVIDAAAAREAAKKARELTRRKG 420

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           V+DIASLPGKLADC ERDP KSELFLVEGDSAGGSAKQGR+R NQAILPL+GKILNVERA
Sbjct: 421 VMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERA 480

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           RFD+MLSS+E+GTLI A+GTGI +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF+R
Sbjct: 481 RFDRMLSSKEVGTLIQAMGTGI-RDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYR 539

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           QMP +I  G LYI +PPLY  TRG+S  Y+K+E +LE+YL++  +         + G+ S
Sbjct: 540 QMPQIIEAGHLYIAQPPLYKATRGRSEVYLKNEAALENYLVDNGVESMALE--TTGGMRS 597

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
             DLR+ I+   +I  +++     ++   IE   I+G  + E   +      +     ++
Sbjct: 598 GEDLRSLIEHGRRIRAVMRYVPRRYNPAIIEALAINGALDPELSHDAQAERLANTVRWMD 657

Query: 644 FIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
             A+  E  W G I        +R+ RGV +  ++E   I S  ++     +    ++Y 
Sbjct: 658 --AQDDEGRWSGRIAEEGGFHFERLWRGVTDHHMIEAGFIGSAEARKLHAIAAEEADSYR 715

Query: 703 TILSLICN------------------GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           T   L+                         +T P  LL+ I + GRKG+++QRYKGLGE
Sbjct: 716 TSSRLVTAKAAAAAEEAGEDELPVATKGSATVTRPSELLEAILTAGRKGLAIQRYKGLGE 775

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           MNA QLWETTL+PD RS+LRV++  A  AD++F+RLMGD VEPRREFIQ+N+L    LD+
Sbjct: 776 MNAEQLWETTLDPDNRSMLRVEVEQADVADEIFTRLMGDVVEPRREFIQDNALNVANLDV 835


>gi|268597708|ref|ZP_06131875.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19]
 gi|268683013|ref|ZP_06149875.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332]
 gi|268551496|gb|EEZ46515.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19]
 gi|268623297|gb|EEZ55697.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332]
          Length = 796

 Score =  889 bits (2298), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL + G + +  GT V FL  ++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHQF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++       
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|59802091|ref|YP_208803.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA 1090]
 gi|254494648|ref|ZP_05107819.1| DNA gyrase subunit B [Neisseria gonorrhoeae 1291]
 gi|260439612|ref|ZP_05793428.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2]
 gi|268593849|ref|ZP_06128016.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02]
 gi|268599958|ref|ZP_06134125.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11]
 gi|268602293|ref|ZP_06136460.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18]
 gi|268683318|ref|ZP_06150180.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|268687441|ref|ZP_06154303.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|293398129|ref|ZP_06642334.1| DNA gyrase, B subunit [Neisseria gonorrhoeae F62]
 gi|59718986|gb|AAW90391.1| putative DNA gyrase subunit B [Neisseria gonorrhoeae FA 1090]
 gi|226513688|gb|EEH63033.1| DNA gyrase subunit B [Neisseria gonorrhoeae 1291]
 gi|268547238|gb|EEZ42656.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02]
 gi|268584089|gb|EEZ48765.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11]
 gi|268586424|gb|EEZ51100.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18]
 gi|268623602|gb|EEZ56002.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|268627725|gb|EEZ60125.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|291611392|gb|EFF40462.1| DNA gyrase, B subunit [Neisseria gonorrhoeae F62]
          Length = 796

 Score =  889 bits (2298), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL + G + +  GT V FL  ++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++       
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|254420618|ref|ZP_05034342.1| DNA gyrase, B subunit [Brevundimonas sp. BAL3]
 gi|196186795|gb|EDX81771.1| DNA gyrase, B subunit [Brevundimonas sp. BAL3]
          Length = 808

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/812 (55%), Positives = 581/812 (71%), Gaps = 13/812 (1%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+D I     Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G
Sbjct: 1   MTDPIAEMPEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD++ V LN DGS TV+DNGRGIPT +H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGG
Sbjct: 61  HADLVQVILNADGSVTVTDNGRGIPTGIHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-------TGTE 172
           LHGVGVSVVNALS WL+L+I R+G  ++M F  G     LV+TG A          +GTE
Sbjct: 121 LHGVGVSVVNALSDWLELKIYRDGKAHQMRFERGDTVKSLVITGDAPIREDTGKPLSGTE 180

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTF PS   FS  DF+  TL+HRLREL+FLNS V I L D+RS EP E  + Y+GG+EAF
Sbjct: 181 VTFYPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLADQRSAEPTETILHYEGGVEAF 240

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +LD+ K P+++  I I+G ++ I +DLA+ WND YHE +LCFTNNIPQ+DGGTHLS  
Sbjct: 241 VRHLDKSKAPILKDVIVIRGKKEGIELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAF 300

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R++LTR +  Y+E S   KK+K SV G+D REG T VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 301 RASLTRVMGGYIESSGAGKKEKVSVTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 360

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R  VE+  ++GL+ W EEHP+EAK +V K+++A+  R+AAR+ARDLTRRK  L+I+SLPG
Sbjct: 361 RPAVEALCSEGLAQWFEEHPVEAKQVVAKIIEAASAREAARKARDLTRRKSALEISSLPG 420

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERARFD+MLSS 
Sbjct: 421 KLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLSSD 480

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            IGTLI ALGTGIG+D F+ +KLRYHKII+M DADVDGAHIRTLLLTFF+RQMP LI  G
Sbjct: 481 LIGTLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYRQMPELITRG 540

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY +++GK  +Y+KD+  ++ YLI +  SE        +  +   DL+  + 
Sbjct: 541 HVYIAQPPLYKVSKGKQSRYLKDQAEMDAYLIEEGSSEAELDLSTGERRL-GLDLQALVR 599

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           +A      +           IEQA ++G+F   +D     + A   A RLN  AE+ + +
Sbjct: 600 EAKAFKGGVDRLSQRAPAFAIEQAALAGLFAENADMTQASAAA---AVRLNLYAEEGDGN 656

Query: 653 WHGSINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           W G+      ++  R  R VQE  VLE + + S  ++     +   +  +    +     
Sbjct: 657 WTGAPGEQGAVVFTRTRRAVQETIVLEETLLRSLDARRLAERAAAFDGVFSAPATYRRKD 716

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
               I GP  LL+ +   G+KG+++QRYKGLGEMN  QLWETTL+ + R+LL+V +    
Sbjct: 717 KSTTIRGPLDLLNAVLDAGKKGLAIQRYKGLGEMNPEQLWETTLDSNARTLLQVSVEHEE 776

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            A+DLF++LMGD VEPRREFIQEN+L +A+D+
Sbjct: 777 DANDLFAKLMGDVVEPRREFIQENALDAAVDV 808


>gi|167560988|ref|ZP_02353904.1| DNA gyrase subunit B [Burkholderia oklahomensis EO147]
 gi|167568252|ref|ZP_02361126.1| DNA gyrase subunit B [Burkholderia oklahomensis C6786]
          Length = 823

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/826 (46%), Positives = 537/826 (65%), Gaps = 26/826 (3%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++       +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113
            GY + I VT++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q S
Sbjct: 61  AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161
           YKVSGGLHGVGVS VNALSSWL+L ++R+G  + M F  GI              +P+ V
Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRAIETRDGIDVSPMQV 180

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +    
Sbjct: 181 VGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDLRSGKE--D 237

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              + GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIP
Sbjct: 238 DFAFVGGVKGFVEYINKTKTVLHPTIFHINGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 297

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSS
Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIIDNEIAKKAKIETSGDDMREGLSCVLSVKVPEPKFSS 357

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRR
Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVEAARARDAARKAREMTRR 417

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE
Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF
Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +RQMP +I  G++YI +PPLY +  G+  +Y+KD+  L+ +++  +L     +  ++   
Sbjct: 538 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELDAHMLRLALQGSELVPTENGTP 597

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS + L       L    ++K     +D   +E  +     +  ++     S  +  A  
Sbjct: 598 ISGDALGELARSYLLAQGVVKRLSRLYDPAALEAIMDGVAIDLSNEASTEASAKALAAAL 657

Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
            +   +   +   ++        + ++R   G     VL+     +   +     ++  +
Sbjct: 658 SDDATKTEVRVVPTYDPVREVRSLRIERTHHGNVRVSVLDEEFQLTADYQQLVNTAHTFK 717

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
                   +        ++   + +  + +   + +S QRYKGLGEMN  QLWETT++P 
Sbjct: 718 GLIGAGAMIKRGERSSNVSDFKNAMKWLMTDAERNMSKQRYKGLGEMNPEQLWETTMDPA 777

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 778 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 823


>gi|225023722|ref|ZP_03712914.1| hypothetical protein EIKCOROL_00586 [Eikenella corrodens ATCC
           23834]
 gi|224943604|gb|EEG24813.1| hypothetical protein EIKCOROL_00586 [Eikenella corrodens ATCC
           23834]
          Length = 799

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/805 (49%), Positives = 527/805 (65%), Gaps = 10/805 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  Q   Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQTQ-QEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV++N D S T+ DNGRGIPT +H +EG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDSITVSINADESITIEDNGRGIPTGIHPKEGRSAAEVIMTILHAGGKFDNNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179
           HGVGVSVVNALS WLKL I REG  + + F  G    PL        +  GT V F+ S 
Sbjct: 120 HGVGVSVVNALSDWLKLTIWREGKEHFVEFRRGETVAPLKAVADCPADKHGTRVQFMASE 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F    + ++TL  R+RELSFLN+ V+I L DKR  +         GG+  FV Y    
Sbjct: 180 ETFGEVQYKFETLAKRIRELSFLNNGVKIELFDKRDGK--HENFAESGGVAGFVRYTTGG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KKPL        G RD ++++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR+A+TR 
Sbjct: 238 KKPLHDKIFYTLGERDGMTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRAAMTRT 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y+E +  +KK K    GDD REG   VLS+K+PDP+FSSQTK+KLVSSE+  VV   
Sbjct: 298 INQYIEANEIAKKAKVDTSGDDMREGLVCVLSVKLPDPKFSSQTKDKLVSSEIAPVVNEV 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           ++  L  +LEE+P +AKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E
Sbjct: 358 LSQALHEFLEENPQDAKIICSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQE 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLIT
Sbjct: 418 KDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLIT 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGT IG++ F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +P
Sbjct: 478 ALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY    GK  +Y+KD+   +++L+  ++ +   +       +   +L       L+   
Sbjct: 538 PLYKAKYGKQERYLKDDTEKDEFLLGLAVDKAKIV--SGGRTLEGAELERAAKQFLRARS 595

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
            I+      D   +   + +   + ES +  + ++A+   + L    E + +   G    
Sbjct: 596 TIEHESRIIDGLVLRALLDTAPISLESAESTDTAIAAL--SSLLAKEEVALERLDGHEGG 653

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-DKIKITG 718
             I + R   G      L+   I S   +     + +++        L     +   +  
Sbjct: 654 HFIKITRQLHGNVMVSYLDQKFIDSKAYQTISRTAEQLQGLVEPGALLHKGEAEPQTVNS 713

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               +D + +  +KG+++QRYKGLGEMNA QLWETT++P+ R LL+V+I DA  AD +F 
Sbjct: 714 FEQSIDILLAGAQKGMAIQRYKGLGEMNAEQLWETTMDPEVRRLLKVRIEDAIAADKVFV 773

Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802
            LMGDEVEPRREFI+ N+L +  +D
Sbjct: 774 TLMGDEVEPRREFIETNALIAQNID 798


>gi|186474776|ref|YP_001856246.1| DNA gyrase subunit B [Burkholderia phymatum STM815]
 gi|184191235|gb|ACC69200.1| DNA gyrase, B subunit [Burkholderia phymatum STM815]
          Length = 823

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/827 (47%), Positives = 541/827 (65%), Gaps = 28/827 (3%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+D   +   +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTDTNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113
            G+ D I V ++ D S +V+DNGRGIPT +      +   SAAE++MT LHAGGKF+Q S
Sbjct: 61  AGHCDDIQVIIHADNSISVTDNGRGIPTGIKRDDKHDPKRSAAEIVMTELHAGGKFDQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVV 161
           YKVSGGLHGVGVS VNALSSWL+L ++R+G  + M F  G++             +P+ V
Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGVVQNRVIEQVDGESLSPIPV 180

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +    
Sbjct: 181 VGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--D 237

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              + GG++ FV Y+++ K  L  +   I G ++ + +++AM+WND Y+ENVLCFTNNIP
Sbjct: 238 DFAFVGGVKGFVEYINKTKSVLHPTIFHIVGEKEGVGVEVAMQWNDSYNENVLCFTNNIP 297

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+     +KK K    GDD REG + VLS+K+P+P+FSS
Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADHEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSS 357

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++TRR
Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVDAARARDAARKAREMTRR 417

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE
Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF
Sbjct: 478 KARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +RQMP +I  G++YI +PPLY +  GK  +Y+KD   L  +++  +L+    +  +    
Sbjct: 538 YRQMPEMIERGYIYIAQPPLYKVKAGKDERYLKDTAELNAHMLRLALNGSELVAAEGATP 597

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           I+ + L       L    ++      +D+  +  AV+ GV    S ++   + A  L  +
Sbjct: 598 IAGDALGELARSYLLAQAVVDRLSRLYDEAAL-GAVMDGVSIDLSSEQSTEASARALEAK 656

Query: 642 LNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L     K E +    +        + V+R   G  +  V++     +   +     +N  
Sbjct: 657 LRDDPLKPEINVFAMYDPVRELRSLRVERRHHGNVKVSVIDEEFQLTADYQQLVNTANTF 716

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNP 757
           +        +      + +    S +  + +   + +S QRYKGLGEMN  QLWETT++P
Sbjct: 717 KGLIGEGAVIKRGERSMAVGDFKSAMKWLIADAERNVSKQRYKGLGEMNPEQLWETTMDP 776

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 777 NVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 823


>gi|94496546|ref|ZP_01303122.1| DNA gyrase, B subunit [Sphingomonas sp. SKA58]
 gi|94423906|gb|EAT08931.1| DNA gyrase, B subunit [Sphingomonas sp. SKA58]
          Length = 835

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/840 (54%), Positives = 585/840 (69%), Gaps = 42/840 (5%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+        + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+
Sbjct: 1   MSEEPLNSSNKNDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQK 112
           L G+ D I +TLN DGS +V DNGRGIPT +HKEEG+SAAEVIMT+LHAGGKF    +  
Sbjct: 61  LAGHCDRIVITLNPDGSVSVEDNGRGIPTGIHKEEGVSAAEVIMTQLHAGGKFENTSDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGT 171
           +YKVSGGLHGVGVSVVNALS WL L I R+G  + M F  G    PL V G A     GT
Sbjct: 121 AYKVSGGLHGVGVSVVNALSEWLDLNIWRDGKEHYMRFAYGDATAPLKVIGDAPEGKKGT 180

Query: 172 EVTFLPSSDIFS--------VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            VTFL S++             D+++D L+HR REL+FLNS V++ L+D R  E +E+ +
Sbjct: 181 RVTFLASTEKAPGDGGTFKNQTDYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVEL 240

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           FY+GGI AFV YLDR+K  LM  PI I G+RD+++ID+A+ WND Y+ENVLCFTNNIPQ+
Sbjct: 241 FYEGGIAAFVKYLDRNKNALMPDPIAIAGTRDDVTIDVALEWNDSYYENVLCFTNNIPQR 300

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+  R+ALTR + +Y EKS   KK+K S+ G+D REG T+++S+K+PDP+FSSQT
Sbjct: 301 DGGTHLAAFRAALTRTLNNYAEKSGALKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQT 360

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR  +ES + D ++ WLEE+P   K+IV+KV+DA+  R+AA++AR+LTRRKG
Sbjct: 361 KDKLVSSEVRQPLESLMADKMAEWLEENPAHGKMIVQKVIDAAAAREAAKKARELTRRKG 420

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            +DIASLPGKLADC ERDP KSELFLVEGDSAGGSAKQGR+R NQAILPL+GKILNVERA
Sbjct: 421 AMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERA 480

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           RFD+MLSS+E+GTLI A+GTGI +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF+R
Sbjct: 481 RFDRMLSSKEVGTLIQAMGTGI-RDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYR 539

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           QMP +I  G LYI +PPLY  +RG+S  Y+K+E +LE YL++  +   +       G   
Sbjct: 540 QMPQIIEAGHLYIAQPPLYKASRGRSEVYLKNEAALEQYLVDNGVETMVLE--TGGGARG 597

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            +DLR  I+   ++  +++     ++   IE   I+G  + E  +E      +     L 
Sbjct: 598 GDDLRGLIEHGRRMRAVMRYVPRRYNPQIIEALSINGALDPELSKESQAERLAATVTWLG 657

Query: 644 FIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
             A  SE  W G I        +R+ RGV +  ++EG  I S  ++     ++    +Y 
Sbjct: 658 --AHDSEGRWSGRIAQEGGFHFERLWRGVTDHHMIEGGFIGSAEARKLHTIASEEAASYQ 715

Query: 703 TILSLIC----------NGDKIK--------ITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           +I  L+             D +         IT P  LL+ I + GRKG+S+QRYKGLGE
Sbjct: 716 SISRLVSAKAAQAAEDAGEDDLPAAPAKGATITSPSDLLEAILAAGRKGLSIQRYKGLGE 775

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           MNA QLWETTL+PD RS+LRV++  A  AD++FS+LMGD VE RREFIQ+N+L    LD+
Sbjct: 776 MNAEQLWETTLDPDNRSMLRVEVEQADIADEIFSQLMGDVVESRREFIQDNALNVANLDV 835


>gi|296157627|ref|ZP_06840462.1| DNA gyrase, B subunit [Burkholderia sp. Ch1-1]
 gi|295892399|gb|EFG72182.1| DNA gyrase, B subunit [Burkholderia sp. Ch1-1]
          Length = 823

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/828 (47%), Positives = 540/828 (65%), Gaps = 30/828 (3%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++   +   +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112
            G+ + I V ++ D S +++DNGRG+PT     D H +   SAAE++MT LHAGGKF+Q 
Sbjct: 61  AGHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-DPKRSAAEIVMTELHAGGKFDQN 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALS+WL+L I+R+G  + M F  G+              +P+ 
Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQ 179

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +   
Sbjct: 180 VTGETE-NRGTEVHFLADETIFGNIEYHYDILAKRIRELSFLNNGVRIRLTDQRTGKE-- 236

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y++++K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 237 EDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           +QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++TR
Sbjct: 357 AQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTR 416

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 536

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP +I  G++YI +PPL+ I  GK  +Y+KDE  +  +++  +L     L  +   
Sbjct: 537 FYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQGSELLASEGAT 596

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            I+ + L       L    ++      +D   +E  +     +  S +E   + A  L  
Sbjct: 597 PITGDALGELARAYLLAQAVVNRLSRLYDAGALEAVMDGIAIDL-SSEEAADASAKALEA 655

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
           +L     K E      +        + V R   G Q+  VL+     +   +     +N 
Sbjct: 656 KLRDDPLKPEVKVTTMYDPVRELRSLRVARTHHGNQKISVLDQDFQLTADYQQLINTANT 715

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +    T   +      + +T   S +  + +   + IS QRYKGLGEMN  QLWETT++
Sbjct: 716 FKGLIGTGAVIKRGERSMAVTDFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMD 775

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 776 PTVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823


>gi|268604557|ref|ZP_06138724.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1]
 gi|268588688|gb|EEZ53364.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1]
          Length = 796

 Score =  888 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL + G + +  GT V FL  ++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++       
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|161870850|ref|YP_001600023.1| DNA gyrase subunit B [Neisseria meningitidis 053442]
 gi|161596403|gb|ABX74063.1| DNA gyrase subunit B [Neisseria meningitidis 053442]
          Length = 814

 Score =  888 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 19  MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 77

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 78  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 137

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 138 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 196

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 197 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 254

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 255 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 314

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 315 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 374

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 375 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 434

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 435 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 494

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 495 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 554

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 555 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 612

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 613 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 671

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 672 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 730

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 731 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 790

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 791 MGDEVEPRRAFIENNALIAQNID 813


>gi|83309738|ref|YP_420002.1| DNA gyrase subunit B [Magnetospirillum magneticum AMB-1]
 gi|82944579|dbj|BAE49443.1| Type IIA topoisomerase [Magnetospirillum magneticum AMB-1]
          Length = 816

 Score =  888 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/800 (54%), Positives = 565/800 (70%), Gaps = 6/800 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A SIQ+L+GL+AV+KRP MYIGDTD  SGLH MIYE +DNA+DE + G+ D   V 
Sbjct: 19  EEYGAGSIQVLRGLEAVRKRPGMYIGDTDDGSGLHRMIYEAVDNAVDEIMNGFGDRCDVV 78

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS  V+DNGRGIP D+H EEGISAAEV +T+LHAGGKF Q S ++S GLHGVG+SV
Sbjct: 79  LNADGSVLVTDNGRGIPVDIHPEEGISAAEVALTKLHAGGKFEQNSNRISSGLHGVGISV 138

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL+LRI R G  + M F +G  + PL V G  G+ TGT+V FLPS   FS  DF
Sbjct: 139 VNALSEWLELRIWRHGKEHFMRFRHGEPEAPLAVVGECGDRTGTQVVFLPSKGTFSHTDF 198

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++DT++HRLREL+FLNS   + + D+R  E RE  + Y+GG++AFV +LDR K+ L    
Sbjct: 199 DFDTVEHRLRELAFLNSRATLLIKDERHAETREALLHYEGGVQAFVQWLDRSKEALHAPI 258

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + I   +D + ++L+M W D YHE  LCFTNN+PQKDGGTHL+G R+ALTR I +Y   S
Sbjct: 259 L-IAAEKDVVRLELSMEWTDSYHETCLCFTNNVPQKDGGTHLAGFRAALTRTINAYANDS 317

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK+K ++ GDD REG T VLS+KMPDP+FSSQ KEKLVSSEVR +VE+ V + L+ W
Sbjct: 318 GIAKKEKVNLAGDDMREGLTCVLSVKMPDPKFSSQAKEKLVSSEVRPLVENLVGEKLAEW 377

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EEHP EA+ +V KV++A+  R+AAR+AR+LTRRKGVLDIA+LPGKLADC ERDP  SEL
Sbjct: 378 FEEHPAEARKVVTKVVEAAAAREAARKARELTRRKGVLDIATLPGKLADCQERDPALSEL 437

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR+R NQAILPL+GKILNVERARFDKMLSS EIGTLI A+GTGIG+
Sbjct: 438 FIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKMLSSAEIGTLIAAMGTGIGR 497

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           + F+++K RYHKIIIMTDADVDG+HIRTLLLTFF+RQMP+LI  G+LYI +PPLY   RG
Sbjct: 498 EDFNVDKARYHKIIIMTDADVDGSHIRTLLLTFFYRQMPALIERGYLYIAQPPLYRAKRG 557

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           +S  Y+KD+ +LE+YLI+  L++ +    D    ++  DLR  ++ A  +  L+      
Sbjct: 558 QSEVYLKDDRALEEYLIDGGLADAVLRMAD-GTQLASIDLRALVEQARSVRNLLTPLSRR 616

Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGS-INNSDILV 664
                +EQA I+   +     +     ++   LA RL+ +    E+ W G+ +       
Sbjct: 617 VPLKLVEQAAIADALDSSLLTDAVRGPAIVQGLAQRLDALETHLERGWTGTWVEGDGYTF 676

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
            R  RGV E   L+ + I S  ++     + R+ E +    +L+    +  ++GP +L+ 
Sbjct: 677 SRTLRGVTETHALDSAVIRSAEARRLHELAPRLRETFDRPAALMVRERETVLSGPVALVT 736

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +   GR+GI++QRYKGLGEMN  QLWETTL+P  RSLL+VK+  A  A+ +FS LMGD 
Sbjct: 737 AVMEQGRRGIAIQRYKGLGEMNPEQLWETTLDPQARSLLQVKVAQADDAEQVFSTLMGDV 796

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR+FIQ N+L    LD+
Sbjct: 797 VEPRRDFIQTNALKVSNLDV 816


>gi|325135020|gb|EGC57648.1| DNA gyrase, B subunit [Neisseria meningitidis M13399]
          Length = 796

 Score =  888 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/803 (49%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I  ++L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGSELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  + +  + S+A  L   L+      E+      +  
Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRSVAE-LNGLLDEKEVALERIEGHEGHQF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++        L    ++  I    
Sbjct: 654 -IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|187922038|ref|YP_001893680.1| DNA gyrase subunit B [Burkholderia phytofirmans PsJN]
 gi|187713232|gb|ACD14456.1| DNA gyrase, B subunit [Burkholderia phytofirmans PsJN]
          Length = 823

 Score =  888 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/828 (46%), Positives = 539/828 (65%), Gaps = 30/828 (3%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++   +   +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112
            G+ + I V ++ D S +++DNGRG+PT     D H +   SAAE++MT LHAGGKF+Q 
Sbjct: 61  AGHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-DPKRSAAEIVMTELHAGGKFDQN 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALS+WL+L I+R+G  + M F  G+              +P+ 
Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQ 179

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +   
Sbjct: 180 VTGETE-NRGTEVHFLADETIFGNIEYHYDILAKRIRELSFLNNGVRIKLTDQRTGKE-- 236

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y++++K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 237 EDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           +QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++TR
Sbjct: 357 AQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTR 416

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 536

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP +I  G++YI +PPL+ I  GK  +Y+KDE  +  +++  +L        +   
Sbjct: 537 FYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQGSELSASEGST 596

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            I+ + L       L    ++      +D   +E  +     +  S +E   + A  L  
Sbjct: 597 PITGDALGELARAYLLAQAVVNRLSRLYDAGALEAIMDGIAIDL-SSEEAADASAKALEA 655

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
           +L     K E      +        + V R   G Q+  VL+     +   +     +N 
Sbjct: 656 KLRDDPLKPEVKVTTMYDPVRELRSLRVARTHHGNQKISVLDQDFQLTADYQQLINTANT 715

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +    T   +      + +T   S +  + +   + IS QRYKGLGEMN  QLWETT++
Sbjct: 716 FKGLIGTGAVIKRGERSMAVTDFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMD 775

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 776 PTVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823


>gi|254670128|emb|CBA05114.1| DNA gyrase subunit B [Neisseria meningitidis alpha153]
          Length = 796

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/803 (49%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|83945027|ref|ZP_00957393.1| DNA gyrase subunit B [Oceanicaulis alexandrii HTCC2633]
 gi|83851809|gb|EAP89664.1| DNA gyrase subunit B [Oceanicaulis alexandrii HTCC2633]
          Length = 800

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/805 (55%), Positives = 555/805 (68%), Gaps = 9/805 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N  Y A+SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+
Sbjct: 1   MSE-TPNQEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              +TV L+ DGS +V+D+GRGIPT +H EEG+SAA+VIMT+LHAGGKF+Q SYKVSGGL
Sbjct: 60  CSQVTVCLHADGSASVTDDGRGIPTQIHAEEGVSAAQVIMTQLHAGGKFDQNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN--PLVVTGSAGNDTGTEVTFLPS 178
           HGVGVSVVNALS WL L I R G  + M F  G  +N   L   G A    GT+V F+PS
Sbjct: 120 HGVGVSVVNALSDWLDLTIWRNGREHTMRFRRGDPENGQDLREVGDANGKKGTQVRFMPS 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + FS   F    L HRLREL+FLNS V+I L D+R  EP E  + Y+GG+ AFV +LDR
Sbjct: 180 EETFSDIVFERARLLHRLRELAFLNSGVKIVLRDEREAEPFEEVLEYEGGVAAFVQHLDR 239

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K P+   P+ I G R+ ++++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTR
Sbjct: 240 TKTPIFPDPVLITGEREGVTVEAALEWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTR 299

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y   S  + K K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES
Sbjct: 300 VINQYAGNSGIAAKSKVSITGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVES 359

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D L+ W EEHP+EAK IV K+++A+  R+AAR+AR+LTRRK  LDI SLPGKLADC 
Sbjct: 360 AVYDTLTEWFEEHPVEAKQIVSKIVEAAAAREAARKARELTRRKSALDITSLPGKLADCQ 419

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ++DP KSELF+VEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS ++GTLI
Sbjct: 420 QKDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSDQVGTLI 479

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGIG+D  D +KLRYHK+IIMTDADVDGAHIRTLLLTFF+RQMP LI  G LYI +
Sbjct: 480 TALGTGIGRDQIDYDKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMPELIERGHLYIAQ 539

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + RGKS +Y+ D+  ++ +LI +  SE +     +   I+  DL   +  A  I 
Sbjct: 540 PPLYKVMRGKSERYLTDQSEMDAFLIEEGSSEAVLELA-NGETITGQDLAERVKAARGIA 598

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI- 657
             +        K     A+ +         +         A RL   A++ E  W G + 
Sbjct: 599 LSLDRLSARAPKF----ALEAAALEGALHPDATQDQVDAAARRLAAQADEGEDGWVGQVL 654

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
               I+ KR  RGV E   L+   + S  +K     +  I  +Y          +  +I 
Sbjct: 655 PEGGIVFKREVRGVVESITLDDKILASPDAKRLSERAWAIRGDYQGPAWFRRKSEDTEIF 714

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
            P +L+  + + G KG+ +QRYKGLGEMN  QLWETTL+P+ RSLLRV +T+A  AD+LF
Sbjct: 715 SPNALVSAVQAAGAKGLKIQRYKGLGEMNPDQLWETTLDPEARSLLRVSVTEADTADELF 774

Query: 778 SRLMGDEVEPRREFIQENSLPSALD 802
           S+LMGD VEPRR+FIQE +L + +D
Sbjct: 775 SKLMGDVVEPRRDFIQEFALEAEVD 799


>gi|332970301|gb|EGK09293.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella kingae ATCC
           23330]
          Length = 806

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/815 (49%), Positives = 531/815 (65%), Gaps = 21/815 (2%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  Q+       Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE
Sbjct: 1   MTEQAQSQQTPQQEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+ D ITV +N D S T+ DNGRGIPT +H +EG SAAEVIMT LHAGGKF+  SYK
Sbjct: 61  ALAGHCDNITVAINADESITIEDNGRGIPTGIHPKEGRSAAEVIMTILHAGGKFDNNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVT 174
           VSGGLHGVGVSVVNALS WLKL I R+G  + + F  G    PL V G    N  GT V 
Sbjct: 121 VSGGLHGVGVSVVNALSDWLKLTIWRDGKEHFVEFHRGETVEPLKVVGDCDPNKHGTRVQ 180

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL S + F +  + ++TL  R+RELSFLN+ V+I L DKR  +         GG+  FV 
Sbjct: 181 FLASEETFGLVQYKFETLAKRIRELSFLNNGVKIELFDKRDGK--HENFAESGGVVGFVQ 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y    KKPL        G +D ++++ AM+WN+ Y E+V CFTNNIPQ+DGGTHL+ LR 
Sbjct: 239 YTTGSKKPLHDKVFYAIGEKDGMTVECAMQWNESYQESVQCFTNNIPQRDGGTHLTALRQ 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            +TR I +Y++K+  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  
Sbjct: 299 VMTRTINNYIDKNEIAKKAKIDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIAP 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           VV   ++  L  +LEE+P +AKII  K+++A+  R+AAR+AR++TRRKGV+D   LPGKL
Sbjct: 359 VVNEVLSQALFEFLEENPNDAKIICGKIVEAARAREAARKAREMTRRKGVMDGLGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARF++ML+SQE+
Sbjct: 419 ADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFERMLASQEV 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            TLITALGT IG++ F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++
Sbjct: 479 ATLITALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYV 538

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLY    GK  +Y+KDE+  +++L+  ++ +   +      V+   +L       
Sbjct: 539 YIAQPPLYKAKHGKQERYLKDEQEKDEFLLGLAVDKAKIV--SGSRVLEGAELLRVAKQF 596

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           L+    I +         I+ AV+  + + E       +      + LN + EK E +  
Sbjct: 597 LRAKNTIAEESR-----VIDSAVLRALIDIEPIDFTTENSVQAAISALNVVLEKQEIALE 651

Query: 655 GSINNSD---ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LIC 709
             + N     I + R   G      L+   + S   +     + +  +      +     
Sbjct: 652 HVVGNEGGHFIKITRQLHGNMAISYLDQKFVDSKAYQILLKTAQQQRDLIDASGADLFKG 711

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
            G+   +T     LD +    +KG+ +QRYKGLGEMN  QLWETT+NP+ R LL+V+I D
Sbjct: 712 EGEAQHVTSFEQALDILLQNAQKGMMIQRYKGLGEMNPEQLWETTMNPEVRRLLKVRIED 771

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A  AD+ F  LMGDEVEPRR FI+ N+L +  +DI
Sbjct: 772 AIAADETFVTLMGDEVEPRRNFIEANALIAQNIDI 806


>gi|325203331|gb|ADY98784.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240355]
          Length = 796

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLHAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|254805746|ref|YP_003083967.1| DNA gyrase subunit B [Neisseria meningitidis alpha14]
 gi|254669288|emb|CBA08244.1| DNA gyrase subunit B [Neisseria meningitidis alpha14]
          Length = 796

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|119896295|ref|YP_931508.1| DNA gyrase subunit B [Azoarcus sp. BH72]
 gi|119668708|emb|CAL92621.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72]
          Length = 829

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/834 (46%), Positives = 526/834 (63%), Gaps = 36/834 (4%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+         + YD  SIQ L+GL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE
Sbjct: 1   MSEPQNTPAPSGNDYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFN 110
           +L G+ D I +T++ D S +V+DNGRGIP      D H E   SAAE++M  LHAGGKFN
Sbjct: 61  ALAGHCDDIVITIHADNSISVTDNGRGIPVGVKMDDKH-EPKRSAAEIVMCVLHAGGKFN 119

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNP 158
           Q SYKVSGGLHGVGVS VNALS WL+L I+R+G  + M F  G               +P
Sbjct: 120 QNSYKVSGGLHGVGVSCVNALSKWLRLTIRRDGKKHFMEFHRGAPQDRVIDVVDGVEVSP 179

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L V G      GTEV +L   +IF   +++Y+ L  RLRELSFLN+ V+I L+D+R+ + 
Sbjct: 180 LKVLGETS-KRGTEVHYLADEEIFGTVEYHYEILAKRLRELSFLNNGVKIRLVDQRTGKE 238

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------RDNISIDLAMRWNDGYH 270
                 + GG+  FV Y++R K  L  S     G+           +S+++AM+WND Y 
Sbjct: 239 --EDFAFAGGVRGFVEYINRTKAVLHPSVFYAAGTTRIPTGAGEAELSVEVAMQWNDSYA 296

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E VLC+TNNIPQ DGGTHL+GLR+A+TR I  Y+E++  +KK K  + GDD REG   VL
Sbjct: 297 EQVLCYTNNIPQADGGTHLTGLRTAMTRVINKYIEENEIAKKAKVDITGDDMREGLACVL 356

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+KMPDP+F+SQTK KLVSSE R  VE  V   L+ +L E+P++AK I  K+++A+  RD
Sbjct: 357 SVKMPDPKFASQTKMKLVSSEARPAVEEVVAAKLTDFLLENPIDAKTICNKIVEAARARD 416

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR++TRRKGVLD   LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAI
Sbjct: 417 AARKAREMTRRKGVLDGVGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAI 476

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPL+GKILNVE+ARFDK+L SQEI TLITALGT IG+D +   KLRYH+II+MTDADVDG
Sbjct: 477 LPLKGKILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRIILMTDADVDG 536

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLTFF+RQMP L+  G +YI +PPLY I  GK+  Y+KD+  L  +L+  +L  
Sbjct: 537 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKTELYIKDDHELNGHLLKLALDG 596

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
            + +  +    I+ + L       L  + +IK      D   ++  +   +     D+  
Sbjct: 597 AVLVPREGADAITDDALGGLARSYLLAEAVIKRLASYIDPEVLQAMLAHDLEISLDDEAA 656

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690
             + A ++   L     +    +H       + ++R+  G  +   +E + + S   +  
Sbjct: 657 ARASADRIQPHL-PEGLRIYAEYHEETEAWRLTIERLHHGNLKFGWVETAFLVSGDYRSI 715

Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
           R  +  I         +     +  +T     +  + +   +G+S QRYKGLGEMN  QL
Sbjct: 716 RTAAASIAGLIGPGAEIRRGEKRQTVTRFADAITWLLAEVERGLSKQRYKGLGEMNPEQL 775

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           WETT++P  R LLRV+I DA  AD++F+ LMGD VEPRR FI+ N+L +  +D+
Sbjct: 776 WETTMDPAVRRLLRVQIDDAIAADEIFTTLMGDNVEPRRAFIESNALYAQNIDV 829


>gi|325145282|gb|EGC67560.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240013]
          Length = 796

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|218767099|ref|YP_002341611.1| DNA gyrase subunit B [Neisseria meningitidis Z2491]
 gi|121051107|emb|CAM07377.1| DNA gyrase subunit B [Neisseria meningitidis Z2491]
          Length = 796

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|170694067|ref|ZP_02885223.1| DNA gyrase, B subunit [Burkholderia graminis C4D1M]
 gi|170141139|gb|EDT09311.1| DNA gyrase, B subunit [Burkholderia graminis C4D1M]
          Length = 823

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/828 (47%), Positives = 539/828 (65%), Gaps = 30/828 (3%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++       +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112
            GY + I V ++ D S +++DNGRG+PT     D H E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  AGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-EPKRSAAEIVMTELHAGGKFDQN 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALS+WL+L I+R+G  + M F  G+              +P+ 
Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRVIEEIDGVAVSPIQ 179

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +   
Sbjct: 180 VVGDTE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLTDQRTGKE-- 236

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 237 DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           +QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++TR
Sbjct: 357 AQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICGKIVDAARARDAARKAREMTR 416

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 536

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP +I  G++YI +PPL+ I  GK  +Y+KDE  +  +++  +L     L  ++  
Sbjct: 537 FYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDESEVNAHILKLALQGSELLASENAT 596

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            I+ + L       L    ++      +D   +E AV+ GV    S +    + A  L  
Sbjct: 597 PITGDALGELARAYLLAQAVVNRLSRLYDAGALE-AVMDGVVIDLSSEAAAETSAKALEA 655

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
           +L   A K E      +        + V R   G Q+  V +     +   +     +N 
Sbjct: 656 KLRDDALKPEVRVTTMYDPVRELRSLKVARTHHGNQKISVFDEEFQLTADYQQLVNTANT 715

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +        +      + +T   S +  + +   + IS QRYKGLGEMN  QLWETT++
Sbjct: 716 FKGLIGAGAVIKRGERSMAVTDFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMD 775

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 776 PTVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823


>gi|325141053|gb|EGC63556.1| DNA gyrase, B subunit [Neisseria meningitidis CU385]
          Length = 796

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|15676138|ref|NP_273269.1| DNA gyrase subunit B [Neisseria meningitidis MC58]
 gi|7225433|gb|AAF40668.1| DNA gyrase subunit B [Neisseria meningitidis MC58]
 gi|316985132|gb|EFV64084.1| DNA gyrase, B subunit [Neisseria meningitidis H44/76]
 gi|325199420|gb|ADY94875.1| DNA gyrase, B subunit [Neisseria meningitidis H44/76]
          Length = 796

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL + G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|329847542|ref|ZP_08262570.1| DNA gyrase, B subunit [Asticcacaulis biprosthecum C19]
 gi|328842605|gb|EGF92174.1| DNA gyrase, B subunit [Asticcacaulis biprosthecum C19]
          Length = 823

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 450/818 (55%), Positives = 570/818 (69%), Gaps = 26/818 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D    S Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE L G+A 
Sbjct: 13  DANGQSEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEVLAGHAT 72

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V LN+DGSCTV+D+GRGIP D+H+ EG+SAAEVIMT LHAGGKF+Q SYKVSGGLHG
Sbjct: 73  RVEVILNVDGSCTVTDDGRGIPVDIHEGEGVSAAEVIMTELHAGGKFDQNSYKVSGGLHG 132

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFL 176
           VGVSVVNALS +L L I R+G  + + F  G    PL V G A       + TGTEVTF 
Sbjct: 133 VGVSVVNALSDYLDLVIYRQGKKHSVRFERGATVKPLEVIGEAPKRDDGRDYTGTEVTFF 192

Query: 177 PSSD-----------IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           PS              FS  DF+  TL+HRLREL+FLNS V I   D R  EP E  + Y
Sbjct: 193 PSMAKKDAQGMTLDGTFSFIDFDRKTLEHRLRELAFLNSGVSIRFADLREAEPYETLLHY 252

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +LD+ K  ++++P+ ++G R+ + +DLA++WND YHE +LCFTNNIPQ+DG
Sbjct: 253 DGGIIEFVRHLDKAKTAIIKAPVAVRGHREKVEVDLALQWNDSYHETMLCFTNNIPQRDG 312

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+  R ALTR +T+Y+E S  +KK+K +V G+D REG T VLS+K+PDP+FSSQTK+
Sbjct: 313 GTHLAAFRGALTRVMTAYLESSGAAKKEKVTVTGEDAREGLTCVLSVKVPDPKFSSQTKD 372

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR  VE  V D L+ W EE+P+EAK IV K+++A+  R+AAR+ARDLTRRK  L
Sbjct: 373 KLVSSEVRPAVEGLVYDKLTQWFEENPVEAKQIVNKIIEAASAREAARKARDLTRRKSAL 432

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DI+SLPGKLADC ERDP +SELF+VEGDSAGGSAKQGR+RENQAILPLRGK+LNVERARF
Sbjct: 433 DISSLPGKLADCQERDPARSELFIVEGDSAGGSAKQGRNRENQAILPLRGKVLNVERARF 492

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DKMLSS++IGTLI ALG GIG+D F+I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQM
Sbjct: 493 DKMLSSEQIGTLIVALGAGIGRDDFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQM 552

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P L+  G+LYI +PPLY + +GKS +Y+KD+  L+ YLI +  + +  L   +   I   
Sbjct: 553 PELLDKGYLYIAQPPLYKVAKGKSSRYLKDDAELDAYLIEEG-NHDAFLELRTGERIIGA 611

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
           DL   +  A      +           IEQA ++G+F  E   E+       +A RL+ +
Sbjct: 612 DLDAQVRAAKSFKASVDRLASRAPAFAIEQAALAGLFGAEPHLEL-------VARRLDRL 664

Query: 646 AEKSEKSWHGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
            +  +  W          +  R  RGV E+  L+ + + S  ++     +  + E +  I
Sbjct: 665 NQDGDGPWSAEAGPAGGYVFSRTRRGVTEKIALDEALLHSQDARRLGERAEGLVELFTDI 724

Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
                      I GP  L+  +   GRKG+S+QRYKGLGEMNA QLWETTL+ + R+LL+
Sbjct: 725 SIFTRKDKSTDIRGPLDLVAAVLDAGRKGLSIQRYKGLGEMNAEQLWETTLDKEARTLLQ 784

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           VK+  A +AD++FS+LMGD VEPRREFIQEN+L + +D
Sbjct: 785 VKVNHADEADEMFSKLMGDLVEPRREFIQENALDAEVD 822


>gi|167626458|ref|YP_001676958.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596459|gb|ABZ86457.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 803

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/812 (51%), Positives = 550/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   G   +  GT +TF PS D
Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVG-TTDKKGTVITFKPSKD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LID+ +   R     Y GGI AFV YL+  K
Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDRIN--NRSEIFKYDGGIIAFVKYLNNSK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 295 NTYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKI+ +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NEKLQEFLLENPKEAKIVCEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 415 DPSLSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L  YL N  L   I  F +    IS   L N+ +   K +K+
Sbjct: 535 LYKVKKGKQETYLKDEDALAVYLGNIGLEGAII-FLEGGNAISGQVLTNYYELYQKSEKV 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           IK +   + +  +        +  ES           + ++ N  A   E+       + 
Sbjct: 594 IKKYAKTYPEKLLRVMAYGAKYVDESAD--IKQWWETIVDKCNHKALSYERFKLIETKDV 651

Query: 661 D--------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           D          V     G    ++++ S   +   +    + + + +       +     
Sbjct: 652 DEDGQETISYGVNHYINGYDTDYIVKNSFFTTKDYEDLVTYGDVLSDISFKGAYVERGAK 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  +    S +D +    R+G  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 712 KEYVDDFESAIDWLLKEARRGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803


>gi|56798248|dbj|BAD82891.1| GyrB [Burkholderia multivorans]
          Length = 824

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/829 (47%), Positives = 536/829 (64%), Gaps = 31/829 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+ V+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 1   MSEQHNSQPDNSSYGASSIQILEGLETVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGI-PT----DLHKEEGISAAEVIMTRLHAGGKFNQ 111
           L GY + I VT++ D S +V DNGRGI PT    D H E   SAAE++MT LHAGGKF+Q
Sbjct: 61  LAGYCNDIHVTIHADNSISVVDNGRGIRPTCMMNDKH-EPKRSAAEIVMTELHAGGKFDQ 119

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPL 159
            SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+
Sbjct: 120 NSYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPM 179

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +  
Sbjct: 180 QVIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE- 237

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                + GG++ FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNN
Sbjct: 238 -DDFAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNN 296

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+F
Sbjct: 297 IPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKF 356

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++T
Sbjct: 357 SSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMT 416

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LN
Sbjct: 417 RRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLN 476

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLT
Sbjct: 477 VEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLT 536

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF+RQMP +I  G++YI +PPLY +  GK  +Y+KD+  L  +++  +L     L  ++ 
Sbjct: 537 FFYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQGSELLPSENA 596

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             I+ + L       L    +I+     +D   +E  +     +  S +    + A  L 
Sbjct: 597 TPITGDALGELARSYLMSQSVIERLSRLYDPAALEAIMDGVSIDL-SSEASTEASAKALH 655

Query: 640 NRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
             L+    K+E      +        + V+R   G     V++     +   +     + 
Sbjct: 656 AALHDDTLKNEVRVVPAYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVNTAK 715

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755
             E        +      + +T   + +  + +   + +S QRYKGLGEMN  QLWETT+
Sbjct: 716 TFEGLIQAGAVIKRGERSMAVTDFKNAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTM 775

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +P+ R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 776 DPNVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824


>gi|241668890|ref|ZP_04756468.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877422|ref|ZP_05250132.1| DNA gyrase subunit B gyrB [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843443|gb|EET21857.1| DNA gyrase subunit B gyrB [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 803

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/812 (51%), Positives = 550/812 (67%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I R G  +   +++G+   PL   G   +  GT +TF PS D
Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVG-TTDKKGTVITFKPSKD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  DF+YD L  R+RELSFLNS V+I LID+ +   R     Y GGI AFV YL+  K
Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDRIN--NRSEIFKYDGGIIAFVKYLNNSK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR +
Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K ++ G+D REG  +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V
Sbjct: 295 NTYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P EAKI+ +K+LD++  R+AAR+ARD+TRRKG LDIA LPGKLADC E+
Sbjct: 355 NEKLQEFLLENPKEAKIVCEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A
Sbjct: 415 DPSLSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PP
Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+KDE++L  YL N  L   I  F +    IS   L N+ +   K +K+
Sbjct: 535 LYKVKKGKQETYLKDEDALAVYLGNIGLEGAII-FLEGGNAISGQVLTNYYELYQKSEKV 593

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK---SWHGSI 657
           IK +   + +  +        +  ES           + ++ N  A   E+        +
Sbjct: 594 IKKYAKTYPEKLLRVMAYGAKYVDESAD--IKQWWETIVDKCNHKALSYERFNLIETKDV 651

Query: 658 NNSDIL-----VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           +          V     G    ++++ S   +   +    + + + +       +     
Sbjct: 652 DEDGQETISYGVNHYINGYDTDYIVKNSFFTTKDYEDLVTYGDVLSDISFKGAYVERGAK 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  I    S +D +    R+G  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +
Sbjct: 712 KEYIDDFESAIDWLLKEARRGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           AD LF+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803


>gi|325265954|ref|ZP_08132640.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella
           denitrificans ATCC 33394]
 gi|324982592|gb|EGC18218.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella
           denitrificans ATCC 33394]
          Length = 800

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/807 (49%), Positives = 529/807 (65%), Gaps = 13/807 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  Q   Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEPTQ-QEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV +N D S T+ DNGRGIPT +H +EG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDNITVCINADESITIEDNGRGIPTGIHPKEGRSAAEVIMTILHAGGKFDNNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS WLKL I REG  + + F  G    PL V G    +  GT V FL S 
Sbjct: 120 HGVGVSVVNALSDWLKLTIWREGKEHFVEFKRGETVEPLKVVGECSPDKHGTRVQFLASE 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D F +  + ++TL  R+RELSFLN+ V+I L DKR  +         GG+  FV+Y+   
Sbjct: 180 DTFGLVQYKFETLAKRIRELSFLNNGVKIELFDKRDGK--HENFAESGGVVGFVNYITGS 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KKPL +      G +D ++++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR+A+TR 
Sbjct: 238 KKPLHEKVFYTIGEKDGMTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRAAMTRT 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV   
Sbjct: 298 INQYIEANEIAKKAKIDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIAPVVNEV 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           ++  L  +LEE+P +AKII  K+++A+  R+AAR+AR+LTRRKGV+D   LPGKLADC E
Sbjct: 358 LSQALHDFLEENPQDAKIICGKIVEAARAREAARKARELTRRKGVMDGLGLPGKLADCQE 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARF++ML+SQE+ TLIT
Sbjct: 418 KDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFERMLASQEVATLIT 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGT IG++ F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +P
Sbjct: 478 ALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY    GK  +Y+KDE+  +++L+  ++ +   +       I   +L       L    
Sbjct: 538 PLYKAKAGKQERYLKDEQEKDEFLLGLAVDKAKIV--SGSRTIEGAELLKLAKQFLYARN 595

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN-FIAEKSEKSWHGSIN 658
            I +     D   +   +     + +S+     ++A+   +  N  +A +      G   
Sbjct: 596 TIAEESRVIDAAVLRALIDIEPISLDSEANAKAAVAALSGSLHNQEVALEYVAGHDG--- 652

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LICNGDKIKI 716
              + + R   G      L+   + S   +  R  + +         +      G+  ++
Sbjct: 653 GHFVKITRQLHGNVMVSYLDQKFVDSKAYQVLRKTAEQQRGLIGKDGAALYKGEGEPQRV 712

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 LD++    +KG+++QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD+ 
Sbjct: 713 ATFEEALDSLLQSAQKGMTIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADET 772

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802
           F  LMGDEVEPRR FI+ N+L +  +D
Sbjct: 773 FVTLMGDEVEPRRAFIETNALVAQNID 799


>gi|332533697|ref|ZP_08409556.1| DNA gyrase subunit B [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036861|gb|EGI73322.1| DNA gyrase subunit B [Pseudoalteromonas haloplanktis ANT/505]
          Length = 784

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/786 (50%), Positives = 532/786 (67%), Gaps = 14/786 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I VT+++DGS +V DNGRGIPT +H+
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIYVTIHLDGSVSVRDNGRGIPTSIHE 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL ++REG ++E  
Sbjct: 61  EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQF 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           +  G+ D PL V G +   TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I 
Sbjct: 121 YTMGVPDAPLAVIGDSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSII 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWND 267
           L D+R  E +     Y+GGI+AFV YL+R+K P+ +        R+   IS++++M+WND
Sbjct: 180 LNDER-EENKSDHFKYEGGIQAFVEYLNRNKTPIHKGVFHFTHEREEDGISVEVSMQWND 238

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREG 325
            Y EN+ CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG
Sbjct: 239 AYQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREG 298

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + +  + +L E+P +AKI+V K++DA
Sbjct: 299 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDA 358

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           S  R+AAR+AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R
Sbjct: 359 SRAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNR 418

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           +NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTD
Sbjct: 419 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTD 478

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           ADVDG+HIRTLLLTFF+RQMP ++  G++YI +PPLY + +GK  +Y+KD+ +L +YL +
Sbjct: 479 ADVDGSHIRTLLLTFFYRQMPEIVERGYIYIAQPPLYKVKKGKQERYIKDDPALVEYLTS 538

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
            +L+            +    L   + D     K+I+     +  T +E+ +       +
Sbjct: 539 LALNNAALYPSADASALEGEALEQVVHDYQNTVKVIERLKRKYPNTVMERLIYQTELKTD 598

Query: 626 SDQEINVSLASKLANRLNFIAEKSEK-------SWHGSINNSDILVKRIARGVQEQFVLE 678
              +    +A       + IA   +         +    N    +V     GV +  VL 
Sbjct: 599 DLSDEAKVIAWTKELVDDLIARDEDATIFHAGTEFDAERNMYYPVVNIRQHGVDKAHVLH 658

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738
              I S   +   +    I         +        +      L+ + +  ++GI +QR
Sbjct: 659 YDFIASRDYQRIAVTGTNIANILKEGAYIQRGEKTKPVDNFVDALEWLITESKRGIYIQR 718

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN SQLWETT++P  R +L+V I DA  AD LF+ LMGD+VEPRREFI+ N+L 
Sbjct: 719 YKGLGEMNPSQLWETTMDPSARRMLQVTIEDAVGADQLFATLMGDQVEPRREFIETNALR 778

Query: 799 -SALDI 803
              LD+
Sbjct: 779 VVNLDV 784


>gi|146328853|ref|YP_001209522.1| DNA gyrase, B subunit [Dichelobacter nodosus VCS1703A]
 gi|146232323|gb|ABQ13301.1| DNA gyrase, B subunit [Dichelobacter nodosus VCS1703A]
          Length = 800

 Score =  885 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/802 (50%), Positives = 540/802 (67%), Gaps = 9/802 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           SSYD+  I++LKGL+AV+ RP MYIG+TD  SGLHHM++EV+DNAIDE+L GY   I V 
Sbjct: 2   SSYDSSRIRVLKGLEAVRIRPGMYIGNTDDGSGLHHMVFEVVDNAIDEALAGYCTEINVI 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ + S TV DNGRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 62  IHQNESITVRDNGRGIPVDIHKEEGRSAAEVIMTILHAGGKFDASSYKVSGGLHGVGVSV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  L+L I+R+G+I+   + +G    PL + G    +TGTE+ FL S + F   +F
Sbjct: 122 VNALSEKLELTIRRDGHIHYQQYRHGEPQAPLAIIGDTE-ETGTEIRFLASRETFHNVEF 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YDTL  RL+ELSFLNS V+I L D+R  +       Y+GGI AF  YL+R+K P+  + 
Sbjct: 181 DYDTLAKRLQELSFLNSGVRIVLTDERKDKT--EVFQYEGGIIAFTRYLNRNKTPIHDTI 238

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                 +D   ++++++WND Y ENV  FTNNIPQ+DGGTH++G RSA+TR + +Y+E  
Sbjct: 239 FHCAIEKDASIVEISLQWNDSYQENVYYFTNNIPQRDGGTHMAGFRSAMTRTLNNYMEAE 298

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K S  GDD REG T+V+SIK+PDP+FSSQTK+KLVSSEV+ +VE  +++ L  +
Sbjct: 299 GIAKKAKISTSGDDAREGLTAVVSIKIPDPKFSSQTKDKLVSSEVKGLVEGVLSEKLQEF 358

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L EHP EAKIIV K++DA+  R+AAR+AR++TRRK  LDI  LPGKLADC E+DP  SEL
Sbjct: 359 LYEHPNEAKIIVNKIVDAARAREAARKAREMTRRKDALDITGLPGKLADCQEKDPALSEL 418

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML+S EI TLITALGTGIG+
Sbjct: 419 FLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLASAEIATLITALGTGIGK 478

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           + FD +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY + +G
Sbjct: 479 EDFDPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKKG 538

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K  QY+KD+  L + L+N +L             I++        + L ++ LIK F  +
Sbjct: 539 KQSQYLKDDHELNELLLNHALEGAELHVNKDAPAIAQPAFEALAREYLALEVLIKRFSHH 598

Query: 608 HDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK---SWHGSINNSDI 662
            D   ++  + + V N +     E   +        L+  A+   +       +     +
Sbjct: 599 IDSRVLKALMDAPVLNRDVFFAPEQLQAWLKDYQFHLDRFAQAGVRLTAHLDHNAATPRV 658

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
            +       +    L+ +   +   +    F+ +             + D++ +     +
Sbjct: 659 HIVIDQHANEIHNYLDANFAEASEYQKIADFAQKTHGLLQEGAFFSNDKDRVAVHYFSDV 718

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           +  +F+ G+K   +QRYKGLGEMN  QLWETTL+P  R +L+VK+ DA  AD++F+ LMG
Sbjct: 719 MQALFAEGKKSYEIQRYKGLGEMNPEQLWETTLDPSVRRMLQVKVQDAMHADEVFTTLMG 778

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           +EVEPRR FI+EN++ +  +DI
Sbjct: 779 EEVEPRRAFIEENAIRAGNIDI 800


>gi|319411305|emb|CBY91715.1| DNA gyrase subunit B [Neisseria meningitidis WUE 2594]
          Length = 796

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|313667526|ref|YP_004047810.1| DNA gyrase subunit B [Neisseria lactamica ST-640]
 gi|309378243|emb|CBX23128.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313004988|emb|CBN86416.1| DNA gyrase subunit B [Neisseria lactamica 020-06]
          Length = 796

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/803 (48%), Positives = 529/803 (65%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL  ++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLAGTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SRALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +      V+   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGKVLEGKELEDAAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I       D   ++  + +   +  S +  + ++A  L+  L+      E+   G   N 
Sbjct: 595 IGQESRIIDDLVLKAMLYAEPVDLSSAESTDRAIAD-LSALLDEKEVVLER-VEGHEGNR 652

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++       +L     +  +    
Sbjct: 653 FIKITRKLHGNVMTSYLESKFLNSKAYQTIVQTAAVLKGLVAAGSTLFKGETEYPVGSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD +    +KG+ +QRYKGLGEMN  QLWETT++P  R LL+V++ DA  AD++F  L
Sbjct: 713 EALDILLQNVQKGMGIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRVEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|308388431|gb|ADO30751.1| DNA gyrase subunit B [Neisseria meningitidis alpha710]
 gi|325130945|gb|EGC53672.1| DNA gyrase, B subunit [Neisseria meningitidis OX99.30304]
 gi|325137042|gb|EGC59638.1| DNA gyrase, B subunit [Neisseria meningitidis M0579]
          Length = 796

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|121634083|ref|YP_974328.1| DNA gyrase subunit B [Neisseria meningitidis FAM18]
 gi|120865789|emb|CAM09520.1| DNA gyrase subunit B [Neisseria meningitidis FAM18]
 gi|325133030|gb|EGC55703.1| DNA gyrase, B subunit [Neisseria meningitidis M6190]
 gi|325139102|gb|EGC61648.1| DNA gyrase, B subunit [Neisseria meningitidis ES14902]
          Length = 796

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/803 (49%), Positives = 531/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L N     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|325980884|ref|YP_004293286.1| DNA gyrase, B subunit [Nitrosomonas sp. AL212]
 gi|325530403|gb|ADZ25124.1| DNA gyrase, B subunit [Nitrosomonas sp. AL212]
          Length = 806

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/812 (49%), Positives = 549/812 (67%), Gaps = 15/812 (1%)

Query: 1   MSDNI------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MSD          ++YD++SI+ILKGLDAV+KRP MYIGDT   +GLHHM++EV+DNAID
Sbjct: 1   MSDQNPHVPKENPANYDSESIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAID 60

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQK 112
           E+L G+ D ITVT++ D S +V DNGRGIPT + +  E   SAAE++MT LHAGGKF+  
Sbjct: 61  EALAGHCDEITVTIHPDNSVSVLDNGRGIPTGIKQDDEMKRSAAEIVMTELHAGGKFDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS WLKL I+R+   +++ F  G+   PL + G +    GTE
Sbjct: 121 SYKVSGGLHGVGVSVVNALSEWLKLTIRRDSKTHQIEFRMGVPVKPLEIIGESERH-GTE 179

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V FL S +IF   +++YD    RLRELSFLN+ V+I LID+RS +       + GGI  F
Sbjct: 180 VHFLASKEIFGNIEYHYDIFAKRLRELSFLNNGVKIHLIDQRSGKD--EKFAFTGGIRNF 237

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y++R K  L  S     G +DNI+++++M+WND Y E VLCFTNNIPQKDGGTHL+GL
Sbjct: 238 VEYINRSKTVLHPSIFYTTGVKDNIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGL 297

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y+EK+  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEV
Sbjct: 298 RAAMTRTLNNYIEKNELAKKAKVETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEV 357

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R VVE  V   LS +L E+PL+AK I  K++D++  R+AAR+AR+LTRRKGVLD   LPG
Sbjct: 358 RPVVEEVVTQKLSEYLLENPLDAKTICNKIIDSARAREAARKARELTRRKGVLDSMGLPG 417

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E++P   EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQ
Sbjct: 418 KLADCQEKNPALCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQ 477

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI +LITALGTG G+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G
Sbjct: 478 EIISLITALGTGFGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 537

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY I  GK  +YVKD+  L+ +L++ +L++      + K  +S   L    +
Sbjct: 538 HIYIAQPPLYKIKHGKKERYVKDDHELKQHLLSLALTDAELHTGEGKPSLSGETLEKIAN 597

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           + +  + +I+      D   +   +     +   +++  ++ A++LA R+  +   +E  
Sbjct: 598 EYILAEAVIERMSQMIDSNVMHALLRQPDIDL-HNEQTAINSAARLAARIKDVEIAAE-- 654

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           +        + + R++ G      L+   + S      +  +   E        +     
Sbjct: 655 YDDVHERYRLKIMRMSHGNVLTSYLDNDFVESGDYVQIQKTAQVFEGLLDQGAYIRRGER 714

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K  I      L+ +    +KG+++QRYKGLGEMN SQLWETT++P+ R LLR +I D+  
Sbjct: 715 KQAINEFKHALEWLLEEAKKGLNVQRYKGLGEMNPSQLWETTMDPENRRLLRAQIEDSIL 774

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            D++F+ LMGD VEPRR FI++N+L +  +DI
Sbjct: 775 TDEIFTTLMGDMVEPRRAFIEKNALRATNIDI 806


>gi|238023232|ref|ZP_04603658.1| hypothetical protein GCWU000324_03159 [Kingella oralis ATCC 51147]
 gi|237865615|gb|EEP66755.1| hypothetical protein GCWU000324_03159 [Kingella oralis ATCC 51147]
          Length = 801

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/808 (49%), Positives = 527/808 (65%), Gaps = 14/808 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    N  Y A SIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L GY
Sbjct: 1   MTQQT-NQEYGAASIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV +N D S T+ DNGRGIPT +H +EG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDRITVAINADESITIEDNGRGIPTGIHPKEGRSAAEVIMTILHAGGKFDNNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTEVTFLPS 178
           HGVGVSVVNALS WLKL I REG  + + F  G    PL   G+A  +   GT V FL S
Sbjct: 120 HGVGVSVVNALSYWLKLTIWREGKEHFVEFKRGETVAPLKAIGAAQPENRHGTRVQFLAS 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            D F   ++ ++TL  R+RELSFLN+ V+I L DKR  +         GG++ FV Y+  
Sbjct: 180 EDTFGTVEYKFETLAKRIRELSFLNNGVRIELFDKRDGK--HEDFAESGGVQGFVQYITG 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            KKPL        G +D ++++ AM+WN+ Y E+V CFTNNIPQ+DGGTHL+ LR A+TR
Sbjct: 238 SKKPLHSKIFYALGEKDGMTVECAMQWNESYQESVQCFTNNIPQRDGGTHLTALRQAMTR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y+  +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  VV  
Sbjct: 298 TINQYIADNDIAKKAKVDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEISPVVNE 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L  +LEE+P +AKII  K+++A+  R+AAR+AR+LTRRKGV+D   LPGKLADC 
Sbjct: 358 VLGEALKNFLEENPNDAKIICGKIVEAARAREAARKARELTRRKGVMDGLGLPGKLADCQ 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARF++ML+SQE+ TLI
Sbjct: 418 EKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFERMLASQEVATLI 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGT IG++ F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI +
Sbjct: 478 TALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY    GK  +Y+KDE   +++L+  ++     +       +   +L       L+  
Sbjct: 538 PPLYKAKHGKQERYLKDEMEKDEFLLGLAVDNAKIV--AGSRTLEGAELTKLAKQFLRAR 595

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN-FIAEKSEKSWHGSI 657
             I +     D   +   +     +  S+     ++A+ L +  N  IA +      G  
Sbjct: 596 NTIAEESRVIDAAVLRALIDIEPIDLSSEPAAQHAIAALLGSLKNPEIALEHIAGQDG-- 653

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG--DKIK 715
               I + R   G      L+   + S   +     + +      +  + +  G  +   
Sbjct: 654 -GHFIKITRQLHGNVMVSYLDQKFVDSKAYQVLLKTAEQQRGLIGSEGAALHKGDAEAQH 712

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +    + LD++ +  +KG++MQRYKGLGEMN  QLWETT+NP+ R LL+V+I DA  AD+
Sbjct: 713 VASFEAALDSLLATAQKGLTMQRYKGLGEMNPEQLWETTMNPEVRRLLKVRIEDAIAADE 772

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802
            F  LMGDEVEPRR FI+ N+L +  +D
Sbjct: 773 TFVTLMGDEVEPRRAFIEANALVAQNID 800


>gi|118594216|ref|ZP_01551563.1| DNA gyrase subunit B [Methylophilales bacterium HTCC2181]
 gi|118439994|gb|EAV46621.1| DNA gyrase subunit B [Methylophilales bacterium HTCC2181]
          Length = 803

 Score =  883 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/808 (51%), Positives = 551/808 (68%), Gaps = 10/808 (1%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+   + N+ Y+ADSI+ILKGLDAV+KRP MYIGDT   SGLHHM++EVLDNAIDESL 
Sbjct: 1   MSEKDDLNNADYNADSIKILKGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDESLA 60

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKV 116
           G+ + I V ++ D S TV+DNGRGIPTD+ +  E   SAAE++MT LHAGGKF+Q SYKV
Sbjct: 61  GHCNDIKVIIHADNSITVTDNGRGIPTDIKEDDEFKRSAAEIVMTELHAGGKFDQNSYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WL+LR+ R G ++E+ F  G    PL   G   + TGTEVTFL
Sbjct: 121 SGGLHGVGVSVVNALSDWLRLRVYRAGKVHEVEFKRGERVAPLKAVGDT-DKTGTEVTFL 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  DF+++ L  R+RELSFLN+ V+I LID RS +       + GGI+ FV Y+
Sbjct: 180 PSTETFNNVDFHFELLCKRIRELSFLNNGVKIELIDHRSGKS--ENFEFSGGIKGFVQYM 237

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +R K  L Q+P      ++ ISID++M+WND Y ENV CFTNNIPQ+DGGTHL+GLR+A+
Sbjct: 238 NRSKNVLHQTPFHAFAEKEGISIDVSMQWNDSYGENVQCFTNNIPQRDGGTHLTGLRAAM 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I +Y+E +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSEV+ VV
Sbjct: 298 TRTINTYIESNELAKKAKVDTGGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPVV 357

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +  V   L+ +L EHP +AKII  K++DA+  R+AAR+ARD+TRRKG +D   LPGKLAD
Sbjct: 358 QDLVGKKLTDYLLEHPKDAKIICNKIVDAARAREAARKARDMTRRKGAMDSLGLPGKLAD 417

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP + E++LVEGDSAGGSAKQGR R+NQAILPL+GKILNV +AR DK+LSSQEI T
Sbjct: 418 CQEKDPAQCEVYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVMKARLDKILSSQEITT 477

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG GIG   FD+ KLRYH+IIIMTDADVDGAHIRTLLLTFFFRQMP L+  G ++I
Sbjct: 478 LITALGAGIG-QDFDVAKLRYHRIIIMTDADVDGAHIRTLLLTFFFRQMPQLVEKGHIFI 536

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +GK  +Y+KDE+ L+ YL+N +L+    L       I    L +   + + 
Sbjct: 537 AQPPLYKVKQGKDERYLKDEQELDQYLVNSALNNASLLTKKGGETIEGGALNSLAREMVL 596

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
            + +IK     +D++ +      G  N   D+      ASKL   ++    K E   H S
Sbjct: 597 TESVIKRLSSRYDESIVRAIHDLGELNLA-DKNATQQYASKLEAIMSANNIKFEVKKHES 655

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
             N  I + +   G  +  +++   + S   K     SN ++        +        +
Sbjct: 656 SENFLIEMNQFVHGNLQASIIDEEFLLSGEYKQIIKSSNLLKNLIDDGAVITRGEKSKPV 715

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 L  +    +  +++QRYKGLGEMN SQLWETT++P+ R+LL+V I D ++ +  
Sbjct: 716 VNFTQALAWLIDEAKNTLNIQRYKGLGEMNPSQLWETTMDPEVRTLLQVTIEDFTELEAT 775

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F RLMGD+VEPRR+FI+EN+L +  LDI
Sbjct: 776 FERLMGDQVEPRRQFIEENALGANNLDI 803


>gi|261400946|ref|ZP_05987071.1| DNA gyrase, B subunit [Neisseria lactamica ATCC 23970]
 gi|269209189|gb|EEZ75644.1| DNA gyrase, B subunit [Neisseria lactamica ATCC 23970]
          Length = 796

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/803 (48%), Positives = 528/803 (65%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL  ++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKRGTTVRFLAGTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +      V+   DL +     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGKVLEGKDLEDAAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I       D   ++  + +   +  S +  + ++A  L+  L+      E+   G   N 
Sbjct: 595 IGQESRIIDDLVLKAMLYAEPVDLSSAESTDRAIAD-LSALLDEKEVVLER-VEGHEGNR 652

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      LE   + S   +     +  ++       +L     +  +    
Sbjct: 653 FIKITRKLHGNVMTSYLESKFLNSKAYQTIVQTAAVLKGLVAAGSTLFKGETEYPVGSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             LD +    +KG+ +QRYKGLGEMN  QLWETT++P  R LL+V + DA  AD++F  L
Sbjct: 713 EALDILLQNVQKGMGIQRYKGLGEMNPEQLWETTMDPSVRRLLKVHVEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|331007621|ref|ZP_08330763.1| DNA gyrase subunit B [gamma proteobacterium IMCC1989]
 gi|330418561|gb|EGG93085.1| DNA gyrase subunit B [gamma proteobacterium IMCC1989]
          Length = 780

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/784 (48%), Positives = 519/784 (66%), Gaps = 14/784 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  +GLHHM++E++DN+IDE+L G+   I V ++ D S +VSDNGRGIPT++H 
Sbjct: 1   MYIGDTDDGTGLHHMVFEIVDNSIDEALAGHCSEIKVIIHPDESVSVSDNGRGIPTEIH- 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+SAAEVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALSS LK+ I+R+G ++E  
Sbjct: 60  EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSSELKMTIRRQGKVHEQI 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G+   PL V G     +GTEV F PS++ F+   F +D L  RLRELSFLNS V+I 
Sbjct: 120 YKHGVPQAPLAVIGDTE-RSGTEVHFKPSAETFTNIKFYFDQLAKRLRELSFLNSGVRIV 178

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG-SRDNISIDLAMRWNDG 268
           L D+RS +       Y+GG+ AFV+YL+ +K P+ +          D +S+++A++WND 
Sbjct: 179 LKDERSAKE--EIFEYEGGLHAFVAYLNTNKNPINKVMHFSSYREEDGVSVEVALQWNDS 236

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           + EN+LC+TNNIPQ+DGGTHL+G R+ALTR + SY+EK    KKDK +  GDD REG T+
Sbjct: 237 FQENLLCYTNNIPQRDGGTHLAGFRAALTRGLNSYIEKEGVLKKDKVNTTGDDAREGLTA 296

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++S+K+PDP+FSSQTK+KLVSSEV+S VE  +    + +L E+P EAK IV K+++A+  
Sbjct: 297 IVSVKVPDPKFSSQTKDKLVSSEVKSAVEQEMGKAFNDYLLENPQEAKSIVGKMIEAAKA 356

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SE++LVEGDSAGGSAKQGR R+ Q
Sbjct: 357 REAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEVYLVEGDSAGGSAKQGRDRKTQ 416

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG + F+ +KLRYH+IIIMTDADV
Sbjct: 417 AILPLKGKILNVEKARFDKMLSSVEVGTLITALGCGIGAEEFNADKLRYHRIIIMTDADV 476

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DG+HIRTLLLTFFFRQ   L+  G +YI +PPLY I +GK  QY+KDE     +  N +L
Sbjct: 477 DGSHIRTLLLTFFFRQTRELVERGHIYIAQPPLYKIAKGKQEQYIKDEAGKTAFFTNVAL 536

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
                    +   IS   L   + +  ++   I      + +  +E+ +     + +   
Sbjct: 537 DGGEVFTNPTAPAISGTALEALVKEYRQVLSTIDRLSRLYPEAVLEKMIYMPALSLDELS 596

Query: 629 EINV--SLASKLANRLNFIAEKSEKSWHGSINNSD------ILVKRIARGVQEQFVLEGS 680
            ++   S ++ L+  L  +       +  +I   +        +++++ G+  ++     
Sbjct: 597 NLDAVTSWSNNLSVALEEVETSGSSRYLVTIKEDEERKLFLPQIEKLSHGLSHEYPFSHD 656

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
              S           +++        +     +  +      LD + S   +G  +QRYK
Sbjct: 657 FFASGEYHSIVELGKKLDGLIEEGGKVKRGEREQPVESFKQALDWLMSESSRGYMIQRYK 716

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT++P TR +L+V I DA  AD +F+ LMGD VEPRR+FI+ N+L   
Sbjct: 717 GLGEMNPEQLWETTMDPSTRRMLQVTIEDAIAADQIFTTLMGDNVEPRRDFIETNALTVE 776

Query: 800 ALDI 803
            LD+
Sbjct: 777 NLDV 780


>gi|304389025|ref|ZP_07371071.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria
           meningitidis ATCC 13091]
 gi|304337006|gb|EFM03194.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria
           meningitidis ATCC 13091]
          Length = 796

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/803 (49%), Positives = 530/803 (66%), Gaps = 9/803 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL V G + +  GT V FL S++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGDS-DKKGTTVRFLASTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+
Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L N     L    +
Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  + +  + S+A  L   L+      E+      +  
Sbjct: 595 IEQESRFVDELVLRAMLHASPVDLSTAESADRSVAE-LNGILDEKEVALERIEGHEGHRF 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    +        
Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD++F  L
Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795


>gi|254483322|ref|ZP_05096553.1| DNA gyrase, B subunit [marine gamma proteobacterium HTCC2148]
 gi|214036417|gb|EEB77093.1| DNA gyrase, B subunit [marine gamma proteobacterium HTCC2148]
          Length = 778

 Score =  882 bits (2280), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/782 (48%), Positives = 518/782 (66%), Gaps = 12/782 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  +GLHHM++E++DN+IDE+L G+   I + ++ D S TVSD+GRGIPT++H 
Sbjct: 1   MYIGDTDDGTGLHHMVFEIVDNSIDEALAGHCSRIDIVIHPDESVTVSDDGRGIPTEMH- 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+SAAEVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALSS L L I+R+G +YE +
Sbjct: 60  EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSSELLLTIRRDGKLYEQT 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G+   PL + G     +GT V F PS+  F+  +F++D L  RLREL+FLNS V I+
Sbjct: 120 YRHGVPAAPLEMVGDTE-TSGTSVRFHPSNQTFTNIEFHFDQLGKRLRELAFLNSGVCIA 178

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+RS +       Y+GG+ AFV YL+++K P+ +       + + + +++A++WND +
Sbjct: 179 LKDERSGQE--EIYSYEGGLNAFVDYLNKNKTPINKPFYFQIDTDEGVGVEVALQWNDSF 236

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            EN+LC+TNNIPQ+DGGTHL+G R+ALTR + +Y+EK   +KK   +  GDD REG T++
Sbjct: 237 QENLLCYTNNIPQRDGGTHLAGFRAALTRNLNNYIEKEGLAKKAAVNTTGDDAREGLTAI 296

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP+FSSQTK+KLVSSEV++ VE  +N     +L E+P EAK +V K+LDA+  R
Sbjct: 297 VSVKVPDPKFSSQTKDKLVSSEVKTAVEQAMNARFGEFLLENPQEAKAVVGKMLDAARAR 356

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           +AAR+AR++TRRKG LDIA LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR+R+ QA
Sbjct: 357 EAARKAREMTRRKGALDIAGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRNRKFQA 416

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVE+ARFDKML S E+GT++TALG GIG++ F+ +KLRYH IIIMTDADVD
Sbjct: 417 ILPLKGKILNVEKARFDKMLGSAEVGTIVTALGCGIGKEEFNPDKLRYHNIIIMTDADVD 476

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G+HIRTLLLTFFFRQM  L+  G +YI +PPLY I RGK  QY+KD+E+L  YL   +L 
Sbjct: 477 GSHIRTLLLTFFFRQMRELVERGHVYIAQPPLYKIARGKQHQYLKDDEALNQYLTQSALE 536

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD-- 627
                       IS   L++ +D    +   I+     +    + + V       +    
Sbjct: 537 NASIFVNPDAPAISGEALQSLVDQYRSVAATIERLSRLYSPEVLWEMVYGAFLKVDEMKD 596

Query: 628 QEINVSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682
           ++   + A +L+ RL+          +             +VK +A G++ +        
Sbjct: 597 EQAVAAFADQLSERLHSSESGSAVYSAVVRKDQERQLFFPVVKLLAHGIESETEYHHEFF 656

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742
            S   +        +         +      +        LD + +  RKG ++QRYKGL
Sbjct: 657 SSGEYRSLVELGETLNTLIEEEGYIQRGEKTLHTQSFAEALDWLMTEARKGYTIQRYKGL 716

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801
           GEMN  QLWETT++P+ R +L+V I DA  AD +F+ LMGD VEPRR+FI+EN+L    L
Sbjct: 717 GEMNPEQLWETTMDPEVRRMLQVTIEDAIAADQIFTTLMGDNVEPRRDFIEENALSVANL 776

Query: 802 DI 803
           D+
Sbjct: 777 DV 778


>gi|209966328|ref|YP_002299243.1| DNA gyrase, B subunit, putative [Rhodospirillum centenum SW]
 gi|209959794|gb|ACJ00431.1| DNA gyrase, B subunit, putative [Rhodospirillum centenum SW]
          Length = 876

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/862 (52%), Positives = 578/862 (67%), Gaps = 67/862 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A SI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L GYAD + VT
Sbjct: 16  EEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYADRVEVT 75

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV DNGRGIP D+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV
Sbjct: 76  LNADGSVTVRDNGRGIPVDIHPGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 135

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG----------NDTGTEVTFLP 177
           VNALS  L LR+ R+G ++EM+F +G    PL   G+A             TGTEVTFLP
Sbjct: 136 VNALSETLFLRVWRKGRVWEMTFRHGDAVAPLADVGAAPVVASGPRAGQPLTGTEVTFLP 195

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S   F+  +F++ TL+HR REL+FLNS V +   D R  EP+   +FY+GG+EAFV YLD
Sbjct: 196 SKQTFTKTEFDFQTLEHRFRELAFLNSGVLLVFTDARGVEPKVTELFYEGGLEAFVQYLD 255

Query: 238 RHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           R K  L +  I ++G R       +++++A++WND YHE+ LCFTNNIPQ+DGGTHL+G 
Sbjct: 256 RSKAALHKPSIAMRGERVSDLGTTVTVEVALQWNDSYHESCLCFTNNIPQRDGGTHLAGF 315

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR I  Y E+S   KK+K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 316 RAALTRTINKYAEESGILKKEKVALSGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 375

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R VVE+ V D L+ W EEHP +A+ IV KV++A+  R+AARRAR+LTRRKG LD+ASLPG
Sbjct: 376 RPVVETVVADALATWFEEHPADARRIVGKVVEAAAAREAARRARELTRRKGALDMASLPG 435

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SELF+VEGDSAGGSAKQGRSR+ QAILPLRGKILNVERARFDKMLSS 
Sbjct: 436 KLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKMLSSA 495

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EIGTLI ALGTGIG++ FD +K RYHKIIIMTDADVDGAHIRTLLLTFF+RQMP+LI  G
Sbjct: 496 EIGTLIAALGTGIGREEFDPDKARYHKIIIMTDADVDGAHIRTLLLTFFYRQMPALIERG 555

Query: 533 FLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           +LYI +PPLY + RG    +Y+KD+  LEDYLI Q    ++          S +DLR  +
Sbjct: 556 YLYIAQPPLYRVKRGTAKERYLKDDRQLEDYLIAQGTD-DVTFTLGDGTTRSGDDLRALV 614

Query: 592 DDALKIDKLIKDFYPN-HDKTFIEQAVISGVFN--CESDQEINVSLASKLANRLNFIAEK 648
           + A      +         +  +EQA +SG  +     + ++  +LA ++A RLN +A +
Sbjct: 615 EQARVARHALTTLARKAGSREVVEQAALSGALSSRLLDNPDLARTLAEEVARRLNDLAVR 674

Query: 649 ---------------------------------------------SEKSWHGSINNSDIL 663
                                                        +E    G       +
Sbjct: 675 QAAAALQASGGPAPEGDGSPGSASAAGATGTGTASTGGVPAGGWTAELIEDGPHGVGGYV 734

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPCSL 722
           + R  RGV  + VL+   + S  ++     +  +   Y T   L     ++  + GP  L
Sbjct: 735 LARRRRGVTHRHVLDVDLLKSVEARRLDGMAEALRAVYDTPGVLTHRVKRLAAVAGPAGL 794

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           +D +   GR G+++QRYKGLGEMN  QLWETTL+P  R+LL+VK++ A +A+++FS LMG
Sbjct: 795 MDAVIEQGRAGLAIQRYKGLGEMNPDQLWETTLDPANRTLLQVKVSHADEAEEVFSTLMG 854

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D VEPRR+FIQEN+L    LD+
Sbjct: 855 DLVEPRRDFIQENALKVANLDV 876


>gi|307728079|ref|YP_003905303.1| DNA gyrase subunit B [Burkholderia sp. CCGE1003]
 gi|307582614|gb|ADN56012.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1003]
          Length = 823

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/828 (46%), Positives = 536/828 (64%), Gaps = 30/828 (3%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++       +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112
            GY + I V ++ D S +++DNGRG+PT     D H E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  AGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-EPKRSAAEIVMTELHAGGKFDQN 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLV 160
           SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+              +P+ 
Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVMTSPMQ 179

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L+D+RS +   
Sbjct: 180 VIGDTE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE-- 236

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 237 EDFAFVGGVKGFVEYINKTKSVLHPTIFHITGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++TR
Sbjct: 357 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTR 416

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TLITALG GIG+D +++ KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTF 536

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP +I  G++YI +PPL+ I  GK  +Y+KDE  +  +++  +L     L  ++  
Sbjct: 537 FYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDETEVNAHILKLALQGSELLPSENGT 596

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            I+   L       L    ++      +D   +E  +     +  S+     S  +  A 
Sbjct: 597 AITGEALGELARAYLLAQAVVDRLSRLYDAGALEAVMDGVAIDLSSEAAAEASAKALEAK 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L   A K E +    +        + V R   G Q+  V +     +   +     +N 
Sbjct: 657 -LRDDALKPEVTVTQMYDPVRELRSLKVARTHHGNQKISVFDEEFQLTADYQQLVNTANT 715

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +    +   +      + ++   S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 716 FKGLIGSGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 775

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 776 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823


>gi|85710072|ref|ZP_01041137.1| type IIA topoisomerase B subunit [Erythrobacter sp. NAP1]
 gi|85688782|gb|EAQ28786.1| type IIA topoisomerase B subunit [Erythrobacter sp. NAP1]
          Length = 848

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/840 (50%), Positives = 566/840 (67%), Gaps = 45/840 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +      Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+L G+ D
Sbjct: 15  NEKMKGDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCD 74

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKVSG 118
           ++ + LN DGS +V DNGRGIP D+HKEEG+SAAEVIMT+LHAGGKF    +  +YKVSG
Sbjct: 75  LVLIELNPDGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSG 134

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG----------ND 168
           GLHGVGVSVVNALS WL+L I R G  + M F +G   N L + G A             
Sbjct: 135 GLHGVGVSVVNALSEWLELVIWRNGQEHWMRFEHGDAVNSLEIKGDAPKVEQNPDDNGYK 194

Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GT VTF  S+D F    +F+++ L+HR REL+FLNS V+I + D R  EP E  +FY+G
Sbjct: 195 KGTRVTFKASTDTFKNVTEFDFEKLEHRYRELAFLNSGVRILIRDLRHEEPIEHDLFYEG 254

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI AFV +LDR+K+ L++ PI +   +D I ID+A+ WND Y+ENVLCFTNNIPQ+DGGT
Sbjct: 255 GIAAFVKWLDRNKEALIEDPISVSAEKDGIGIDVALEWNDSYYENVLCFTNNIPQRDGGT 314

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+  R+ALT  + +Y E+S    K K S+ G+D REG T+++S+K+PDP+FSSQTK+KL
Sbjct: 315 HLAAFRAALTSTLNNYAERSGLLSKAKVSLSGEDMREGLTAIVSVKLPDPKFSSQTKDKL 374

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEVR  ++S + + ++ WLEE+P +AK I++K++DA      A +      RKG + +
Sbjct: 375 VSSEVRQPLQSLMGEKMNEWLEENPGDAKAIIQKIVDA-AAAREAAKRAREMSRKGAMSV 433

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKL+DC ERD  K+ELFLVEGDSAGGSAK GR  + QAILPLRGKILNVERARFD+
Sbjct: 434 ASLPGKLSDCRERDATKAELFLVEGDSAGGSAKGGRDSQYQAILPLRGKILNVERARFDR 493

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           ++SS+E+GTLI A+GTGI +D FD+ KLRYHKI+IMTDADVDGAHIRTLLLTFF RQMP 
Sbjct: 494 IISSREVGTLIQAMGTGI-RDEFDLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMPE 552

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           ++  G L+I +PPL+ + +GKS  YVKD+ +L+ YL++  L   +     S G  S  DL
Sbjct: 553 IVKAGHLFIAQPPLFKVAKGKSEVYVKDQAALDRYLVDAGLQGRVLE--TSGGARSGEDL 610

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
           R  +D+AL++  LI      +D+  IEQ  +SG  + +      ++     A+RL   A 
Sbjct: 611 RALVDNALRLKNLIAFVPRRYDRAVIEQMALSGALDPKLADADRLAALEAAASRLE--AS 668

Query: 648 KSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
            ++  W  S+  N  +   R+ RGV +   ++G  + S  +      ++ + + Y   + 
Sbjct: 669 DADAKWSVSVRENGSVQFSRLWRGVTDVHEIDGRFLTSTEAIKLHGLASPLADAYEGSVR 728

Query: 707 LICNGD----------------------KIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           L+  GD                      +  IT P  LLDT+ + GRKG+S+ RYKGLGE
Sbjct: 729 LVKAGDVAEEEPDTASEDEDGDEPAALAEDAITRPSQLLDTVLAAGRKGLSISRYKGLGE 788

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           MN  QLWETTL+P+ R LL+VK+ DA   D++F+RLMGD VEPRREFIQ+N+L    LD+
Sbjct: 789 MNPEQLWETTLDPENRILLQVKVEDADVTDEIFTRLMGDVVEPRREFIQDNALNVANLDV 848


>gi|166709899|ref|ZP_02241106.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 814

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/816 (49%), Positives = 541/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V + +DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     +      E +Q   +     + NR      + +
Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVETLHAEGNQHPALDALQAVLNRGTLGTARYQ 658

Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  +  N  + ++  R   G +   VL   +  S   +  R  S  + +       ++
Sbjct: 659 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|114330039|ref|YP_746261.1| DNA gyrase subunit B [Nitrosomonas eutropha C91]
 gi|114307053|gb|ABI58296.1| DNA gyrase subunit B [Nitrosomonas eutropha C91]
          Length = 809

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/807 (50%), Positives = 547/807 (67%), Gaps = 11/807 (1%)

Query: 2   SDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           + N ++S   YD++SI+ILKGLDAV+KRP MYIGDT   +GLHHM++EV+DNAIDE+L G
Sbjct: 9   TKNTESSQRDYDSNSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAG 68

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           Y D I+V ++ D S +V DNGRGIPTD+ +  E+  SAAE++MT LHAGGKF+  SYKVS
Sbjct: 69  YCDEISVIIHADNSISVQDNGRGIPTDIKQDDEQKRSAAEIVMTELHAGGKFDDNSYKVS 128

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+L I R+GN++++ F +G+   PL VTG   +  GTEV FL 
Sbjct: 129 GGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHGTEVHFLA 187

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S  IF    ++YD    RLRELSFLN  ++I L+D+R  + RE T  + GGI  FV Y++
Sbjct: 188 SQAIFGNVTYHYDIFARRLRELSFLNYGIRIRLVDRR--DNREETFAFSGGIRNFVEYIN 245

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R K  L  S    +G +D+I++++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+T
Sbjct: 246 RTKTVLHPSIFYAKGMKDDITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMT 305

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+EK+  +KK K    GDD REG T VLSIK+ +P+FSSQTKEKLVSSEVR VVE
Sbjct: 306 RTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSSQTKEKLVSSEVRPVVE 365

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V+  LS ++ E+P EAKII  K+++A+  R+AAR+AR+LTRRKGVLD   LPGKLADC
Sbjct: 366 EVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRRKGVLDSMGLPGKLADC 425

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DPK  EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++SSQEI +L
Sbjct: 426 QEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLISSQEIVSL 485

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI 
Sbjct: 486 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIA 545

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY I  GK  +Y+KD+  L+ +++  +L             I    L    D+ L  
Sbjct: 546 QPPLYKIKHGKQERYLKDDYELKRHILGLALVGAELHPGMDNPPIVGETLAKIADEYLVA 605

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
           + +I+      D+  +   +     +  S +      A +LA+ L+ +  +    +    
Sbjct: 606 EAVIERMSQLIDRAVMYALLKQPNIDL-SSEASAQDSAVRLASLLDDV--EITAEYDEDS 662

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
            N  + + R   G      L+   + S      R  +  +         +     ++ I 
Sbjct: 663 ENYQLRINRKQHGNLRTSYLDTDFLKSGDFAKIRQTAQILHGLIGEGAKVKRGEQEVPIL 722

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ + +  +KG+++QRYKGLGEMN  QLWETT++P  R LLRV+I D+   D++F
Sbjct: 723 EFKEALEWLLAEAKKGVTIQRYKGLGEMNPEQLWETTMDPSNRLLLRVQIEDSILTDEIF 782

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMGD VEPRR FI+ N+L +  +DI
Sbjct: 783 TTLMGDVVEPRRAFIESNALRARNIDI 809


>gi|187479879|ref|YP_787904.1| DNA gyrase subunit B [Bordetella avium 197N]
 gi|115424466|emb|CAJ51020.1| DNA gyrase subunit B [Bordetella avium 197N]
          Length = 817

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/821 (47%), Positives = 529/821 (64%), Gaps = 24/821 (2%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD      + S Y ADSI++LKGL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+
Sbjct: 1   MSDQQNIGPETSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114
           L GY D I VT++ D S +V+DNGRGIPTD+HK  E G SAAE++MT LHAGGKF+Q SY
Sbjct: 61  LAGYCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVS VNALS WL+L I+R G +++M F  G    PL VTG   +  GTEV 
Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGERVAPLAVTG-TTDKRGTEVR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL    IF+  +++Y+ L  RLRELSFLN+ V+I LID+R  +       + GG++ FV 
Sbjct: 180 FLADPIIFTNIEYHYEILSKRLRELSFLNNGVKIRLIDQRQGKE--ENFAFSGGVKGFVE 237

Query: 235 YLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           Y++R K  L  +   +          + +++AM+WND Y E+VLCFTNNIPQ+DGG+HL+
Sbjct: 238 YINRAKTVLHPNVFAVSTESSAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSHLT 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR I  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 298 GLRAAMTRVINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  V   L  WL EHP +AK +  K+++A+  R+AAR+AR++TRRK VL+ A L
Sbjct: 358 EVRPAVEDAVARSLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++
Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TLITALGT IG   F+I+KLRYH++IIMTDADVDGAHIRTLLLT  +RQMP L+ 
Sbjct: 478 SEQIATLITALGTSIG-PDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVA 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G +YI +PPL+ +  G+  +Y+KDE     +++  +L +   L  +    IS   L   
Sbjct: 537 RGHIYIAQPPLFKVKVGREERYLKDEVEEAKFMLQLALKDAQLLPREGAATISGEALAEL 596

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
               + +D +I       D   +      GV     DQ    + A +L + L+  A  + 
Sbjct: 597 ARQYVLVDTVISRLSRVFDVPALSALA-EGVDIKLDDQAAAEASAQRLHDALHDPAHPNS 655

Query: 651 K----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
                  H   +   ++V+R+  G     +++   +           ++           
Sbjct: 656 VTVTAELHPDGDTYRLVVRRMHHGNYRVSIIDADFVSGADYAVLVKSASTFMGLIGPGAV 715

Query: 707 LICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
           +         +  ++     +  + +   +G+S QRYKGLGEMN  QLWETT++P  R L
Sbjct: 716 VARGEGDKRREQPVSDFREAMQWLRTEAERGLSKQRYKGLGEMNPDQLWETTMDPAVRRL 775

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           LRV+I DA  AD++F+ LMGD+VEPRR FI+ ++L +  +D
Sbjct: 776 LRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSASNID 816


>gi|117923324|ref|YP_863941.1| DNA gyrase subunit B [Magnetococcus sp. MC-1]
 gi|117607080|gb|ABK42535.1| DNA gyrase subunit B [Magnetococcus sp. MC-1]
          Length = 812

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/818 (51%), Positives = 556/818 (67%), Gaps = 21/818 (2%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M+            +YD+ +I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAID
Sbjct: 1   MTTENAPEAQHDHSTYDSTNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAID 60

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+ D + V L+ DGSC+VSDNGRGIPTD+HKEEG SAAEVIMT LHAGGKF+  SY
Sbjct: 61  EALAGHCDRVEVILHTDGSCSVSDNGRGIPTDMHKEEGRSAAEVIMTVLHAGGKFDDNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           K+SGGLHGVGVSVVNALS  L+L IKR G +   ++  G    PL V G    D+GT V 
Sbjct: 121 KISGGLHGVGVSVVNALSETLELTIKRGGKVCHQTYHLGEPTAPLAVIGDTP-DSGTTVR 179

Query: 175 FLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS  IF    +F++DTL  RLRELSFLN  V+I + D+R  +      FY+GGI +FV
Sbjct: 180 FKPSPLIFHNVLEFSFDTLSQRLRELSFLNDGVRIFIHDERDDKSH--NFFYEGGIRSFV 237

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL++ + PLM  PI  +  R+ I+ ++A++WND Y ENV CFTNNIPQ+DGGTHL+G R
Sbjct: 238 EYLNKARTPLMP-PIHFRDERNGITAEVALQWNDSYQENVYCFTNNIPQRDGGTHLAGFR 296

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR I +Y   +   KK+K ++ GDDCREG T+V+S+K+PDP+FSSQTK+KLVSSEVR
Sbjct: 297 GALTRTINNYASANNLLKKEKVTISGDDCREGLTAVISVKVPDPKFSSQTKDKLVSSEVR 356

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            VVES + + L  + EEHP EAK I+ K ++A+  R+AAR+AR+LTRRK  L+I+SLPGK
Sbjct: 357 PVVESVIGESLGTFFEEHPAEAKAIIAKSVEAANAREAARKARELTRRKSALEISSLPGK 416

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC ERDP K EL+LVEGDSAGGSAKQ R R++QA+LPL+GKILNVE+ARFDKM+SSQE
Sbjct: 417 LADCQERDPAKCELYLVEGDSAGGSAKQARDRKHQAVLPLKGKILNVEKARFDKMISSQE 476

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +GTLITALGTGIG++ ++I KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP ++  G 
Sbjct: 477 VGTLITALGTGIGREEYNIEKLRYHHIIIMTDADVDGAHIRTLLLTFFYRQMPEIVKRGH 536

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LYI +PPLY +++GK  QY+KD+++L   L+N  L        +   V+ +  L   + D
Sbjct: 537 LYIAQPPLYRVSKGKQEQYLKDDDALNQLLMNYGLHG--VEGRNGSKVLDEAALSVLVRD 594

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEK 651
           A +  K++     +HD   ++ A  +   +    ++     +L +     L     + E+
Sbjct: 595 AARYRKMLDRLGRHHDALALDIAASALHIDEAILKDSAAAGALIAPFTEMLQARGGEEER 654

Query: 652 -----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
                      ++  ILV+R   G+ +   L  + + S   K     + R +E       
Sbjct: 655 LQVSLLHDPETSSWVILVERAVHGMLQFTRLNLAMVHSAEYKAMLAIAKRYQEEMGDEGQ 714

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
           L+ N            L  +   GR+G+++QRYKGLGEMN  QLWETT++P  R+LL+V+
Sbjct: 715 LVKNEKSSPAGRVADFLQLVLDEGRRGLTIQRYKGLGEMNPDQLWETTMDPSVRTLLQVR 774

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + D   A+++F+ LMGD VEPRR+FIQEN+L    LD+
Sbjct: 775 VDDEVGANEVFTTLMGDVVEPRRDFIQENALNVTNLDV 812


>gi|21229482|ref|NP_635399.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66766356|ref|YP_241118.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188989400|ref|YP_001901410.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21110942|gb|AAM39323.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66571688|gb|AAY47098.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167731160|emb|CAP49332.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris]
          Length = 814

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/816 (49%), Positives = 539/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQTTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +++DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKIHVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+ +IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPAVEIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R A
Sbjct: 239 LAQLKTPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRGA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSNYIEQNGIAKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASSAVEGAALIPASDEPPITGEALEKLLLLFA 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
              + I      +D   +   +     +      E D    +     + NR      +  
Sbjct: 599 GAKEAIARNAHRYDPALLTALIDLPPLDVVQLQAEGDVHPTLDALQAVLNRGTLGTARYH 658

Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  + ++  + ++  R   G +   VL   +  S   +  R  +  +         ++
Sbjct: 659 LRFDPATDSAAASLVSVRKHMGEEFTQVLPMGAFESGELRPLREVALALHGLVREGAQIL 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKSHPITSFAQAQAWLLEEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|91781387|ref|YP_556593.1| DNA gyrase subunit B [Burkholderia xenovorans LB400]
 gi|91685341|gb|ABE28541.1| DNA gyrase subunit B [Burkholderia xenovorans LB400]
          Length = 823

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/828 (47%), Positives = 544/828 (65%), Gaps = 30/828 (3%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++   +   +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112
            G+ + I V ++ D S +++DNGRG+PT     D H +   SAAE++MT LHAGGKF+Q 
Sbjct: 61  AGHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-DPKRSAAEIVMTELHAGGKFDQN 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALS+WL+L I+R+G  + M F  G+              +P+ 
Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQ 179

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG    + GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +   
Sbjct: 180 VTGETE-NRGTEVHFLADETIFGNIEYHYDILAKRIRELSFLNNGVRIKLTDQRTGKE-- 236

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y++++K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 237 EDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           +QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++TR
Sbjct: 357 AQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTR 416

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 536

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP +I  G++YI +PPL+ I  GK  +Y+KDE  +  +++  +L     L  +   
Sbjct: 537 FYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQGSELLASEGAT 596

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            I+ + L       L    ++      +D   +E AV+ GV    S +E     A+ L  
Sbjct: 597 PITGDALGELARAYLLAQAVVNRLSRLYDAGALE-AVMDGVVVDLSSEEAAEVSAAALEA 655

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
           +L   A K E      +        + V R   G Q+  VL+     +   +     +N 
Sbjct: 656 KLRDDALKPEVKVTTMYDPVRELRSLRVARTHHGNQKISVLDQDFQLTADYQQLINTANT 715

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +    T   +      + +T   S +  + +   + IS QRYKGLGEMN  QLWETT++
Sbjct: 716 FKGLIGTGAVIKRGERSMAVTDFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMD 775

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 776 PTVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823


>gi|56477036|ref|YP_158625.1| DNA gyrase subunit B [Aromatoleum aromaticum EbN1]
 gi|56313079|emb|CAI07724.1| DNA gyrase (Subunit B) [Aromatoleum aromaticum EbN1]
          Length = 831

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/836 (45%), Positives = 524/836 (62%), Gaps = 38/836 (4%)

Query: 1   MSDNI------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS++       +  +YD  SIQ L+GL+AV+KRP MYIGDT   +GLHHM++EV+DNAID
Sbjct: 1   MSESQVLPHTPEPDAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAID 60

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKF 109
           E+L G+ D I +T++ D S +V+DNGRGIP      D H E   SAAE++M  LHAGGKF
Sbjct: 61  EALAGHCDDIVITIHADNSISVADNGRGIPVGVKMDDKH-EPKRSAAEIVMCVLHAGGKF 119

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DN 157
           NQ SYKVSGGLHGVGVS VNALS WL L + R+G  + + F +G+              +
Sbjct: 120 NQNSYKVSGGLHGVGVSCVNALSKWLHLTVARDGKKHFIEFHHGVPQNRVIELVDGVEVS 179

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           P+ +TG      GT V +L   +IF   +++Y+ L  RLRELSFLN+ V+I L+D+RS +
Sbjct: 180 PMRITGETT-KRGTRVHYLADEEIFGTVEYHYEILAKRLRELSFLNNGVKIRLVDQRSGK 238

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI---------QGSRDNISIDLAMRWNDG 268
                  + GG++ FV Y++R K  L  +              G    + +++AM+WND 
Sbjct: 239 E--EDFAFAGGVKGFVEYINRTKSVLHPTVFYAAGTTRIPTGHGHDAELGVEVAMQWNDS 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E VLC+TNNIPQ DGGTHL+GLR+A+TR I  Y+E+   +KK K  + GDD REG   
Sbjct: 297 YAEQVLCYTNNIPQADGGTHLTGLRAAMTRIINKYIEEHEIAKKAKVDITGDDMREGLAC 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VLS+KMPDP+F+SQTK KLVSSE R  VE  V + L+ +L+E+PL+AK I  K+++A+  
Sbjct: 357 VLSVKMPDPKFASQTKMKLVSSEARPAVEEVVANKLTDFLQENPLDAKTICAKIVEAARA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           RDAAR+AR++TRRKG+LD   LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ Q
Sbjct: 417 RDAARKAREMTRRKGLLDGVGLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPL+GKILNVE+ARFDK+L SQEI T+ITALGTGIG+D +   KLRYH+IIIMTDADV
Sbjct: 477 AILPLKGKILNVEKARFDKLLQSQEIATMITALGTGIGKDDYKPEKLRYHRIIIMTDADV 536

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DGAHIRTLLLTFF+RQMP L+  G +YI +PPLY I  GK+  Y+KDE +L  +L+  +L
Sbjct: 537 DGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKNEMYIKDENALNQHLLKLAL 596

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
              + L  +    I+   L       L  + +I       D   +   +   +     D+
Sbjct: 597 DGAVLLPREGAAPIADEALGGLARSYLLAEAVINRLAGYVDPAVLHAMLAQNLAVNLDDE 656

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
                 A+++   L   +      +H    +  + ++R+  G      ++   + +   +
Sbjct: 657 AAARDSAARIQPHLPA-SVTIRPEYHDEAESWRLAIERMHHGNLRLAWIDEEFLITGDYR 715

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
             R  +  I +       +        IT     +  +     +G++ QRYKGLGEMN  
Sbjct: 716 SIRTAAEAISDLIGVGAEIRRGEKSHPITRFSEAIRWLLGEVERGLTKQRYKGLGEMNPE 775

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           QLWETT++P  R LL+V+I DA  AD++F+ LMGD VEPRR FI+ N+L +  +D+
Sbjct: 776 QLWETTMDPAVRRLLKVQIDDAIAADEIFTTLMGDNVEPRRAFIEGNALYARNIDV 831


>gi|33603961|ref|NP_891521.1| DNA gyrase subunit B [Bordetella bronchiseptica RB50]
 gi|33568937|emb|CAE35351.1| DNA gyrase subunit B [Bordetella bronchiseptica RB50]
          Length = 817

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/821 (46%), Positives = 524/821 (63%), Gaps = 24/821 (2%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD      +N+ Y ADSI++LKGL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+
Sbjct: 1   MSDQQNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114
           L G+ D I VT++ D S +V+DNGRGIPTD+HK  E G SAAE++MT LHAGGKF+Q SY
Sbjct: 61  LAGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVS VNALS WL+L I+R G +++M F  G    PL  TG   +  GTEV 
Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVAPLTATGPT-DKRGTEVR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL    IF+  +++Y+ L  RLRELSFLN+ V++ L+D+R  +       + GG++ FV 
Sbjct: 180 FLADPAIFTNIEYHYEILSKRLRELSFLNNGVKVRLVDQRQGKE--ENFAFSGGVKGFVE 237

Query: 235 YLDRHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           Y++R K  L  +   +          + +++AM+WND Y E+VLCFTNNIPQ+DGGTHL+
Sbjct: 238 YINRSKSVLHPNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLT 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR +  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 298 GLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  V   L  WL EHP +AK +  K+++A+  R+AAR+AR++TRRK VL+ A L
Sbjct: 358 EVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++
Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TLITALGT IG   F+I+KLRYH++IIMTDADVDGAHIRTLLLT  +RQMP L+ 
Sbjct: 478 SEQIATLITALGTSIG-PDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVA 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G +YI +PPLY +  G+  +Y+KD++    +++  +L +   +       I    L   
Sbjct: 537 RGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQLALKDAELIPSQGAAPIRGEALNEL 596

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--- 647
               +  D +I       D   +         + E D E   + A +L++ L+  +    
Sbjct: 597 ARQYVLADAVISRLSRVFDVAALSALAEGVEIDLE-DAERTKASAQRLSDALHAASPANG 655

Query: 648 -KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
            +    +        + V+R+  G     VL+   +           +            
Sbjct: 656 VEVVAEYDDVAEKHRLAVRRMHHGNVRVSVLDADFVRGADYAVLAKSAKTFLGLVGAGAI 715

Query: 707 LICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
           +         +  ++     +  +     +G+S QRYKGLGEMN  QLWETT++P  R L
Sbjct: 716 VARGEGDKRKEQFVSDFREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRL 775

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           LRV+I DA  AD++F+ LMGD+VEPRR FI+ ++L +  +D
Sbjct: 776 LRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSAGNID 816


>gi|294665502|ref|ZP_06730785.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292604705|gb|EFF48073.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 814

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/816 (50%), Positives = 538/816 (65%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +  DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKILADGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI-----NVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     + E  Q        +     + NR      + +
Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAKGDQHPTLDALQAVLNRGTLGTARYQ 658

Query: 651 KSWH-GSINNSDILVKRIAR-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  GS N    LV      G +   VL   +  S   +  R  S  + +       ++
Sbjct: 659 LRFDPGSDNAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|78045560|ref|YP_361735.1| DNA gyrase subunit B [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78033990|emb|CAJ21635.1| DNA gyrase subunit B [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 832

 Score =  880 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/816 (50%), Positives = 539/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 19  MTDEQNIPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 78

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +  DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 79  ALAGHADDIVVKILADGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 138

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 139 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 197

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 198 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 256

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 257 LAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 316

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 317 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 376

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 377 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 436

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 437 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 496

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 497 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 556

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 557 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 616

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     +      E DQ   +     + NR      + +
Sbjct: 617 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQ 676

Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +     N  + ++  R   G +   VL   +  S   +  R  S  + +       ++
Sbjct: 677 LRFDPGSENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 736

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 737 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 796

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 797 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 832


>gi|325926216|ref|ZP_08187574.1| DNA gyrase subunit B [Xanthomonas perforans 91-118]
 gi|325543398|gb|EGD14823.1| DNA gyrase subunit B [Xanthomonas perforans 91-118]
          Length = 814

 Score =  880 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/816 (50%), Positives = 539/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQNIPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +  DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKILADGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     +      E DQ   +     + NR      + +
Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQ 658

Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +     N  + ++  R   G +   VL   +  S   +  R  S  + +       ++
Sbjct: 659 LRFDPGSENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|148261868|ref|YP_001235995.1| DNA gyrase, B subunit [Acidiphilium cryptum JF-5]
 gi|326405373|ref|YP_004285455.1| DNA gyrase subunit B [Acidiphilium multivorum AIU301]
 gi|146403549|gb|ABQ32076.1| DNA gyrase subunit B [Acidiphilium cryptum JF-5]
 gi|325052235|dbj|BAJ82573.1| DNA gyrase subunit B [Acidiphilium multivorum AIU301]
          Length = 812

 Score =  880 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/802 (53%), Positives = 563/802 (70%), Gaps = 21/802 (2%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YDA SI +L+GLDAV+KRP MYIGDTD  SGLHHM +E++DNA+DE+  G+AD + V LN
Sbjct: 24  YDAASISVLRGLDAVRKRPGMYIGDTDDGSGLHHMGFEIIDNAVDEAQAGFADRVDVVLN 83

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS TV+DNGRGIPTD+H EEGISAAEV++TRLHAGGKFNQ SYKVSGGLHGVG +VVN
Sbjct: 84  GDGSMTVTDNGRGIPTDIHPEEGISAAEVVLTRLHAGGKFNQNSYKVSGGLHGVGAAVVN 143

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS W+++RI R+G  + + F NG    PL V G++ + TGT VTF PS+  F+  +F++
Sbjct: 144 ALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGTGTSVTFRPSAATFTRTEFDF 203

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
              + RLREL+FLNS + I+L D+R    +E    Y+GG+  FVS+LDR K  L   P+ 
Sbjct: 204 AIYERRLRELAFLNSGLTINLRDERHSAVQEAHFRYEGGLVEFVSWLDRAKTQLFSPPVT 263

Query: 250 IQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                    I ++ A+ WND YHE +LCFTNNI Q+DGGTHL+G RSALTR ++ Y E  
Sbjct: 264 AFKDDAPGGIKVEFALAWNDTYHETMLCFTNNIVQRDGGTHLAGFRSALTRVVSKYAESL 323

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
                   S+ G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +V++ V D L  W
Sbjct: 324 GKKDS--LSLSGEDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVQPLVQAAVADALEHW 381

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            E HP E ++I +KV+DA+  R+AAR+AR+LTRRKGVLDI++LPGKLADC ERDP KSE+
Sbjct: 382 FETHPKEGRLIAQKVMDAASAREAARKARELTRRKGVLDISTLPGKLADCQERDPAKSEI 441

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG- 486
           F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+ML S EIGTLITALGTGIG 
Sbjct: 442 FIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDRMLGSAEIGTLITALGTGIGP 501

Query: 487 ----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
               Q  FDI+KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQM  LI  G LYI +PPLY
Sbjct: 502 AEPEQGGFDISKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMRELIERGHLYIAQPPLY 561

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + RG   +Y+KD++++E YL  ++L         ++  I   DL   +    +  + I 
Sbjct: 562 RVKRGNEERYLKDDDAMEAYLFERAL---------AEVAIEGVDLAAELPFMREAARRIA 612

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
           D   +    ++EQA I+G+       E    LA  LA RL+ I+  +E+ W  +++   +
Sbjct: 613 DLARDIPVAYVEQAAIAGLLGA--TPEAAGDLAPVLAARLDAISLPNERGWMVAVDAQGV 670

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
            + R  RGV E+  ++ + + S  +++    S R+E  + T   L        + GP SL
Sbjct: 671 TMARTVRGVAERHTIDLAMLRSSDARWLAERSGRLEARFATAPQLAHGTAAQPVRGPSSL 730

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           ++T+F IGRKG+S+QR+KGLGEMN  QLW+TTL+P TR LL+V+I DA  +D +FS LMG
Sbjct: 731 IETLFGIGRKGLSIQRFKGLGEMNPDQLWQTTLDPTTRRLLQVRIGDAEDSDQIFSTLMG 790

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D VEPRREFI  N+L    LD+
Sbjct: 791 DVVEPRREFIVGNALKVANLDV 812


>gi|33598882|ref|NP_886525.1| DNA gyrase subunit B [Bordetella parapertussis 12822]
 gi|33575012|emb|CAE39678.1| DNA gyrase subunit B [Bordetella parapertussis]
          Length = 817

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/821 (46%), Positives = 524/821 (63%), Gaps = 24/821 (2%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD      +N+ Y ADSI++LKGL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+
Sbjct: 1   MSDQQNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114
           L G+ D I VT++ D S +V+DNGRGIPTD+HK  E G SAAE++MT LHAGGKF+Q SY
Sbjct: 61  LAGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVS VNALS WL+L I+R G +++M F  G    PL  TG   +  GTEV 
Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVAPLTATGPT-DKRGTEVR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL    IF+  +++Y+ L  RLRELSFLN+ V++ L+D+R  +       + GG++ FV 
Sbjct: 180 FLADPAIFTNIEYHYEILSKRLRELSFLNNGVKVRLVDQRQGKE--ENFAFSGGVKGFVE 237

Query: 235 YLDRHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           Y++R K  L  +   +          + +++AM+WND Y E+VLCFTNNIPQ+DGGTHL+
Sbjct: 238 YINRSKSVLHPNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLT 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR +  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 298 GLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  V   L  WL EHP +AK +  K+++A+  R+AAR+AR++TRRK VL+ A L
Sbjct: 358 EVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++
Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TLITALGT IG   F+I+KLRYH++IIMTDADVDGAHIRTLLLT  +RQMP L+ 
Sbjct: 478 SEQIATLITALGTSIG-PDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVA 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G +YI +PPLY +  G+  +Y+KD++    +++  +L +   +       I    L   
Sbjct: 537 RGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQLALKDAELIPSQGAAPIRGEALNEL 596

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--- 647
               +  D +I       D   +         + E D E   + A +L++ L+  +    
Sbjct: 597 ARQYVLADAVISRLSRVFDVAALSALAEGVEIDLE-DAERTKASAQRLSDALHAASPANG 655

Query: 648 -KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
            +    +        + V+R+  G     VL+   +           +            
Sbjct: 656 VEVVAEYDDVAEKHRLAVRRMHHGNVRVSVLDADFVRDADYAVLAKSAKTFLGLVGAGAI 715

Query: 707 LICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
           +         +  ++     +  +     +G+S QRYKGLGEMN  QLWETT++P  R L
Sbjct: 716 VARGEGDKRKEQFVSDFREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRL 775

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           LRV+I DA  AD++F+ LMGD+VEPRR FI+ ++L +  +D
Sbjct: 776 LRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSAGNID 816


>gi|323524380|ref|YP_004226533.1| DNA gyrase subunit B [Burkholderia sp. CCGE1001]
 gi|323381382|gb|ADX53473.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1001]
          Length = 823

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/828 (46%), Positives = 536/828 (64%), Gaps = 30/828 (3%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++       +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112
            GY + I V ++ D S +++DNGRG+PT     D H E   SAAE++MT LHAGGKF+Q 
Sbjct: 61  AGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-EPKRSAAEIVMTELHAGGKFDQN 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLV 160
           SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+              +P+ 
Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVMTSPMQ 179

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L+D+RS +   
Sbjct: 180 VVGDTE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE-- 236

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 237 EDFAFVGGVKGFVEYINKTKSVLHPTIFHITGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+FS
Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++TR
Sbjct: 357 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTR 416

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR+DK+LSS++I TLITALG GIG++ +++ KLRYH+IIIMTDADVDGAHIRTLLLTF
Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTF 536

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP +I  G++YI +PPLY I  GK  +Y+KDE  +  +++  +L     L  ++  
Sbjct: 537 FYRQMPEMIERGYIYIAQPPLYKIKAGKDERYLKDETEVNAHILKLALQGSELLPSENST 596

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            I+ + L       L    ++      +D   +E  +     +  S+     S  +  A 
Sbjct: 597 AITGDALGELARAYLLAQAVVDRLSRLYDAGALEAVMDGVAIDLSSEAAAEASAKALEAK 656

Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L   A K E +    +        + V R   G Q+  V +     +   +     +N 
Sbjct: 657 -LRDDALKPEVTVTTMYDPVRELRSLKVARTHHGNQKISVFDEEFQLTADYQQLVNTANT 715

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
            +        +      + ++   S +  + +   + +S QRYKGLGEMN  QLWETT++
Sbjct: 716 FKGLIGAGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 775

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 776 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823


>gi|289662280|ref|ZP_06483861.1| DNA gyrase subunit B [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 814

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/816 (49%), Positives = 540/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        + +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQNTPPTPSGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V + +DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI-----NVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     + E  Q        +     + NR      + +
Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDHHPTLDALQAVLNRGTLGTARYQ 658

Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  +  N  + ++  R   G +   VL   +  S   +  R  S  + +       ++
Sbjct: 659 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKSHPITNFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|21240778|ref|NP_640360.1| DNA gyrase subunit B [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106042|gb|AAM34896.1| DNA gyrase subunit B [Xanthomonas axonopodis pv. citri str. 306]
          Length = 814

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/816 (50%), Positives = 539/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +  DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKILADGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     +      E DQ   +     + NR      + +
Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQ 658

Query: 651 KSWH-GSINNSDILVKRIAR-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  GS N    LV      G +   VL   +  S   +  R  S  + +       ++
Sbjct: 659 LRFDPGSDNAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|311696597|gb|ADP99470.1| DNA gyrase subunit B-like protein [marine bacterium HP15]
          Length = 779

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/782 (48%), Positives = 516/782 (65%), Gaps = 11/782 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  +GLHHM++E++DN+IDE+L GY   I V ++ D S TV DNGRGIP DLH+
Sbjct: 1   MYIGDTDDGTGLHHMVFELVDNSIDEALAGYCSEIGVIIHPDESVTVKDNGRGIPVDLHE 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L L I+R+  +YE +
Sbjct: 61  EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSTLTLTIRRDNKVYEQT 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G+ + PL   G   + +GT+V F+PS + F+  +F+YD L  RLREL+FLNS V+I 
Sbjct: 121 YTHGVPNAPLAAVGET-DASGTKVHFIPSPETFTHIEFHYDILAKRLRELAFLNSGVRIR 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+RS +       Y+GG+ AFV +L+ +K P+ +     +   D I+++++M+WND +
Sbjct: 180 LTDERSGKE--EVFEYEGGLRAFVEHLNSNKTPINRVFHFNREREDGIAVEVSMQWNDAF 237

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            EN+ CFTNNIPQ+DGGTHL+G R+ALTR + +Y+E+    KK K +  GDD REG T++
Sbjct: 238 QENIYCFTNNIPQRDGGTHLAGFRAALTRSLNNYIEQEGLGKKAKVATSGDDAREGLTAI 297

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP+FSSQTK+KLVSSEV++ VE  +    + +L+E P EAK+IV K+L+A+  R
Sbjct: 298 ISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSFAEYLQEQPNEAKLIVNKMLEAARAR 357

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           +AAR+ARD+TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QA
Sbjct: 358 EAARKARDMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKTQA 417

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG++ F+ +KLRYH IIIMTDADVD
Sbjct: 418 ILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADVD 477

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G+HIRTLLLTF FRQM  +I  G ++I  PPLY + RGK  QY+KDE++ E YL   +L 
Sbjct: 478 GSHIRTLLLTFLFRQMREIIERGHVFIAMPPLYKVKRGKQEQYLKDEKAKEAYLTQTALE 537

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
                       I  + L   + D   +  +I      +    +EQ + +     E  +E
Sbjct: 538 GAQLYVNPEAPAIKDSALETMVKDYQAVMNMIGRLSRAYPAKVLEQMLQNVTLKPEHLKE 597

Query: 630 IN--VSLASKLANRLNFIAEKSEKSWHGSINNSD-----ILVKRIARGVQEQFVLEGSSI 682
                   ++L + L+       K       +++       V     G+  + V      
Sbjct: 598 EASVARWVARLGDGLDLDTRTGTKYTFSVTKDTERALYLPKVTIYVHGIPYEHVFSHEFF 657

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742
            S            ++        +     K  +      LD +    ++G+++QRYKGL
Sbjct: 658 ESSSYAAIARMGETLDGLIEDGAYIQRGERKQPVLSFEGALDWLMKEAQRGLNIQRYKGL 717

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801
           GEMN  QLWETT++P+TR +++V I DA  AD +F+ LMGD+VEPRR FIQ N+L    L
Sbjct: 718 GEMNPEQLWETTMDPETRRMMKVTIEDAIAADQIFTTLMGDDVEPRRNFIQTNALEVTNL 777

Query: 802 DI 803
           D+
Sbjct: 778 DV 779


>gi|289667646|ref|ZP_06488721.1| DNA gyrase subunit B [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 814

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/816 (49%), Positives = 538/816 (65%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        + +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQNTPPTPSGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V + +DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P E K I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEVKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD  +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDAAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI-----NVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     + E  Q        +     + NR      + +
Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDHHPTLDALQAVLNRGTLGTARYQ 658

Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  +  N  + ++  R   G +   VL   +  S   +  R  S  + +       ++
Sbjct: 659 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKSHPITNFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|94676498|ref|YP_588600.1| DNA gyrase, B subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219648|gb|ABF13807.1| DNA gyrase, B subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 802

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/806 (49%), Positives = 551/806 (68%), Gaps = 14/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCQEILV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V DNGRGIPTD+H EE  SAAEVIMT LHAGGKF+  SYKVSGGLHGVG+S
Sbjct: 62  TIHEDNSISVQDNGRGIPTDIHIEERRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGIS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L+L IKREG+IY   + NG+  +PL + G++   TGT + F PS  IF+ + 
Sbjct: 122 VVNALSEKLELFIKREGHIYYQIYYNGVPQSPLKIVGNS-IQTGTTIRFWPSFIIFTNKK 180

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y+ L  RLRELSFLNS + ISL DKR+ +       Y+GGI+AF+ YL+++KKP+  
Sbjct: 181 EFQYEILAQRLRELSFLNSGLSISLHDKRNSQL--EHFHYQGGIKAFIKYLNKNKKPIHT 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +   I   +  I++++AM+WND   EN+ CFTNNIPQ +GGTHL G R+A+TR I  Y++
Sbjct: 239 NIFYIAVDKCGINVEIAMQWNDSCQENIYCFTNNIPQPNGGTHLVGFRTAMTRTINYYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +KK+K    GDD REG  ++LS+K+PDP+FSSQTK+KLVSSEV++VVES +N+   
Sbjct: 299 KEGYNKKNKIIATGDDAREGLIAILSVKVPDPKFSSQTKDKLVSSEVKAVVESLMNERFI 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +A+II+ K++DA+  R+AAR+AR++ +RKG+LD+A LPGKLADC ERDPK +
Sbjct: 359 EYLLEYPSDARIIINKIIDAARAREAARKAREINKRKGILDLAGLPGKLADCQERDPKFA 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS EI  LIT LG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSNEIAALITVLGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ ++++KLRYH IIIMTDADVDG+HIRTLLLTFF+R MP +IH G ++I +PPLY + 
Sbjct: 479 GRNEYNLDKLRYHTIIIMTDADVDGSHIRTLLLTFFYRYMPDIIHRGHIFIAQPPLYKVR 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KDE+++E Y  + ++            +IS   L+  + D   + K+I    
Sbjct: 539 KGKQEQYIKDEDAMEQYQTSIAIKGAQLHSNT--KIISGERLKTLVTDYYVVQKIINRME 596

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNF-----IAEKSEKSWHGSIN 658
               +  ++  +   +      +++++     + L+NRLN      I+       +    
Sbjct: 597 RLFPRILLKNLMYYPILTKNQMEQVSLVTDWIASLSNRLNQQDQQGISYDFNVQENYIHK 656

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +  +     G+   ++L    I S       I  ++I++       +        +  
Sbjct: 657 LFEPKILVRNHGISADYLLNLDFIQSNDYSKMTILGSKIQDLMQPNTYIKRGEHHKFVQN 716

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              +++ +    R G+ +QRYKGLGEMN +QLWETT++P  R++LRV + DA  AD LF+
Sbjct: 717 FEQVVEWLAKESRHGLVVQRYKGLGEMNPTQLWETTMDPANRNILRVTVKDAIMADQLFT 776

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR FIQEN+L    +D+
Sbjct: 777 TLMGDAVEPRRVFIQENALKVKNIDV 802


>gi|325915698|ref|ZP_08178003.1| DNA gyrase subunit B [Xanthomonas vesicatoria ATCC 35937]
 gi|325538115|gb|EGD09806.1| DNA gyrase subunit B [Xanthomonas vesicatoria ATCC 35937]
          Length = 814

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/816 (49%), Positives = 540/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQNTPTTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V + +DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPAVAIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR ++SY+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSSYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLYT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     +      E D    +     + NR      + +
Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVAQLQAEGDVHPTLDALQAVLNRGTLGTARYQ 658

Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  +  N  + ++  R   G +   VL   +  S   +  R  S  + +       ++
Sbjct: 659 LRFDPATENIAATLVAIRRHMGEEFTQVLPMGAFESGELRPLRDVSLALNDLIREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKTHAITSFAQAHAWLLEEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|84514650|ref|ZP_01002014.1| DNA gyrase subunit B [Loktanella vestfoldensis SKA53]
 gi|84511701|gb|EAQ08154.1| DNA gyrase subunit B [Loktanella vestfoldensis SKA53]
          Length = 774

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/775 (54%), Positives = 545/775 (70%), Gaps = 4/775 (0%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  SGLHHM+YEV+DN IDE+L G+AD + V +N D S TV DNGRGIP  +H+
Sbjct: 1   MYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADHVYVRINADSSVTVGDNGRGIPVGIHE 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
            EG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVVNALS +L+LRI REG  +   
Sbjct: 61  GEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDFLELRIWREGKEHYAR 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F  G     L V G A    GTEVTFL +   FS +DF++  L+ RLREL+FLNS V+I 
Sbjct: 121 FEGGFTVESLRVVGDANGRKGTEVTFLAALTTFSNRDFDFHILEKRLRELAFLNSGVRII 180

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D R  EP    +FY+GG+  FV YLDR K PLM++PI + G RD+I +++AM WND Y
Sbjct: 181 LEDLRPAEPLRNELFYEGGVREFVKYLDRSKTPLMETPIYVTGERDDIGVEVAMWWNDSY 240

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           +E VL FTNNIPQ+DGGTHL+G R ALTR I  Y  ++  +KK+K ++ GDD REG T V
Sbjct: 241 NEMVLPFTNNIPQRDGGTHLAGFRGALTRAIIKYATETGITKKEKIALTGDDAREGLTCV 300

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           LS+K+PDP+FSSQTK+KLVSSEVR  VE+ + + L+ W EE+P  AK I+ K+++A    
Sbjct: 301 LSVKVPDPKFSSQTKDKLVSSEVRPAVENLMGEKLNEWFEENPATAKSIISKIVEA-AAA 359

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
             A R     RRK  +D+     KL DCSE+DP K+E+FLVEGDSAGGSA+ GR R  QA
Sbjct: 360 REAARKAREIRRKSAMDVNFNASKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRGTQA 419

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVERARFD+ML SQEIG L+ ALGTGIG+D F I+KLRYHK+IIMTDADVD
Sbjct: 420 ILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFKIDKLRYHKVIIMTDADVD 479

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           GAHIRTLLLTFFFRQMP LI  G LYI +PPLY +TRG+S  Y+KD+ ++++YLI Q + 
Sbjct: 480 GAHIRTLLLTFFFRQMPELIEGGHLYIAQPPLYKVTRGRSEVYLKDQAAMDEYLIEQGID 539

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
             +     +   I+  DLR  +D+A ++ ++++ F  ++ +  +EQA I+G F     + 
Sbjct: 540 GAML-RQGNGEEIAGADLRRIVDEARQLKRVLEAFPTHYPRHILEQAAIAGAFVPGVVEN 598

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
                A ++A RL+ +A + E+ W G I  +  + + RI RGV+E   L+G+ + S  ++
Sbjct: 599 DLQGTADRVAQRLDLVALEWERGWQGRITQDKGMRLARILRGVEEVRTLDGTMLRSGEAR 658

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
               F+  +++ Y    +L+       I GP  LL  I   G KG+S+QRYKGLGEMN  
Sbjct: 659 RTGTFTQSLQDVYNLPATLVRKDRSQLIHGPLDLLRAILEEGEKGLSLQRYKGLGEMNPD 718

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           QLWETTL+PD R+LL+VK+ D ++ADDLF++LMGD VEPRREFIQ N+L    LD
Sbjct: 719 QLWETTLDPDARTLLQVKVEDVAEADDLFTKLMGDVVEPRREFIQTNALNVENLD 773


>gi|291612475|ref|YP_003522632.1| DNA gyrase, B subunit [Sideroxydans lithotrophicus ES-1]
 gi|291582587|gb|ADE10245.1| DNA gyrase, B subunit [Sideroxydans lithotrophicus ES-1]
          Length = 809

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/820 (47%), Positives = 524/820 (63%), Gaps = 28/820 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN     YD  SIQ L+GL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSDN-----YDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKV 116
            D I V ++ D S +VSDNGRGIP  +      E   SAAE+++T LHAGGKFNQ SYKV
Sbjct: 56  CDDIKVIIHGDNSISVSDNGRGIPIGIKFDDKHEPKRSAAEIVLTVLHAGGKFNQNSYKV 115

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF------------INGILDNPLVVTGS 164
           SGGLHGVGVS VN LS WLKL   R+G  + + F             NG+  +P+   G 
Sbjct: 116 SGGLHGVGVSCVNGLSEWLKLTTYRDGKKFGLEFVRGAVKDRHVEVQNGVDVSPVRELGE 175

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           + N  GTEV FL   +IF + +F+Y+ L  RLRELSFLN+ V+I LID+R+ +       
Sbjct: 176 S-NKRGTEVHFLADKEIFGLVEFHYEILAKRLRELSFLNNGVKIELIDQRTGKS--ENFA 232

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y GG+  FV Y+++ K  L        G +DNI++D+AM+WND Y E V CFTNNIPQ+D
Sbjct: 233 YSGGVRGFVEYMNKSKTVLHPKCFEATGEKDNITVDVAMQWNDSYSEVVQCFTNNIPQRD 292

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++GLR A+TR I  Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK
Sbjct: 293 GGTHMTGLRMAMTRVINKYIEDNELAKKAKVDTTGDDMREGLTCVLSVKVPDPKFSSQTK 352

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+  V   V   L+ +L E+P++AKII  K+++A+  RDAAR+AR+LTRRKGV
Sbjct: 353 DKLVSSEVQPAVNEVVTQKLTDFLLENPVDAKIICGKIIEAARARDAARKARELTRRKGV 412

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD   LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERAR
Sbjct: 413 LDGIGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERAR 472

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           F+K++SSQEI TLIT LGTGIG++ ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQ
Sbjct: 473 FEKLISSQEIATLITVLGTGIGKEEYNADKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQ 532

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           MP L+  G +YI +PPLY I +G+  +Y+KDE  L+ Y++  +L+            I  
Sbjct: 533 MPELVERGHVYIAQPPLYKIKQGRDERYLKDEHELKTYMLGSALNNAAFFPALDATPIQG 592

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             L          + +I               ++    + E  ++   S         + 
Sbjct: 593 EALGEIAKQYFLAEAVIDRLTHFIAPEASHALLVLPALSLEDAEQAKKSAKLLEEACGSV 652

Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
           I  + E   +G +    + ++++  G      L+   + S      R  ++ ++      
Sbjct: 653 IRAQVETDINGEL---RLRLEKLYHGNYSVSYLDREFLHSGDYVQIRQTADALDGLISPT 709

Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
              +    K  +      ++ +    +KG+S+QRYKGLGEMN  QLWETT++   R LL+
Sbjct: 710 AYAMRGEQKRGVGSFKQAIEWLLEEAKKGVSIQRYKGLGEMNPEQLWETTMDVKNRILLK 769

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           V+I DA  AD++F+ LMGD VEPRR FI++N+L    LD+
Sbjct: 770 VRIEDAVGADEIFTTLMGDVVEPRRAFIEKNALGVKNLDV 809


>gi|325922762|ref|ZP_08184496.1| DNA gyrase subunit B [Xanthomonas gardneri ATCC 19865]
 gi|325546758|gb|EGD17878.1| DNA gyrase subunit B [Xanthomonas gardneri ATCC 19865]
          Length = 814

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/816 (49%), Positives = 544/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+++       NS+YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTEDQNTPTTPNSTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V + +DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPAVAIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSNYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     +      E DQ   +     + NR      + +
Sbjct: 599 GANEAIARNAHRYDPALMTALIDLPPLDVAKLQAEGDQHPTLDKLQAVLNRGTLGTARYQ 658

Query: 651 KSWHGSINNSD--ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  + +++   ++  R   G +   VL   +  S   +  R  +  ++        ++
Sbjct: 659 LRFDPATDSTSATLVAVRKHMGEEFTQVLPMGAFESGELRPLREVALALDGLVREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKTHPITSFAQAHAWLLEEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|33591698|ref|NP_879342.1| DNA gyrase subunit B [Bordetella pertussis Tohama I]
 gi|33571341|emb|CAE44818.1| DNA gyrase subunit B [Bordetella pertussis Tohama I]
 gi|332381117|gb|AEE65964.1| DNA gyrase subunit B [Bordetella pertussis CS]
          Length = 817

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/821 (46%), Positives = 524/821 (63%), Gaps = 24/821 (2%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD      +N+ Y ADSI++LKGL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+
Sbjct: 1   MSDQQNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114
           L G+ D I VT++ D S +V+DNGRGIPTD+HK  E G SAAE++MT LHAGGKF+Q SY
Sbjct: 61  LAGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVS VNALS WL+L I+R G +++M F  G    PL  TG   +  GTEV 
Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVAPLTATGPT-DKRGTEVR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL    IF+  +++Y+ L  RLRELSFLN+ V++ L+D+R  +       + GG++ FV 
Sbjct: 180 FLADPAIFTNIEYHYEILSKRLRELSFLNNGVKVRLVDQRQGKE--ENFAFSGGVKGFVE 237

Query: 235 YLDRHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           Y++R K  L  +   +          + +++AM+WND Y E+VLCFTNNIPQ+DGGTHL+
Sbjct: 238 YINRSKSVLHLNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLT 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR +  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 298 GLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  V   L  WL EHP +AK +  K+++A+  R+AAR+AR++TRRK VL+ A L
Sbjct: 358 EVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++
Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TLITALGT IG   F+I+KLRYH++IIMTDADVDGAHIRTLLLT  +RQMP L+ 
Sbjct: 478 SEQIATLITALGTSIG-PDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVA 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G +YI +PPLY +  G+  +Y+KD++    +++  +L +   +       I    L   
Sbjct: 537 RGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQLALKDAELIPSQGAAPIRGEALNEL 596

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--- 647
               +  D +I       D   +         + E D E   + A +L++ L+  +    
Sbjct: 597 ARQYVLADAVISRLSRVFDVAALSALAEGVEIDLE-DAERTKASAQRLSDALHAASPANG 655

Query: 648 -KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
            +    +        + V+R+  G     VL+   +           +            
Sbjct: 656 VEVVAEYDDVAEKHRLAVRRMHHGNVRVSVLDADFVRGADYAVLAKSAKTFLGLVGAGAI 715

Query: 707 LICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
           +         +  ++     +  +     +G+S QRYKGLGEMN  QLWETT++P  R L
Sbjct: 716 VARGEGDKRKEQFVSDFREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRL 775

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           LRV+I DA  AD++F+ LMGD+VEPRR FI+ ++L +  +D
Sbjct: 776 LRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSAGNID 816


>gi|58579627|ref|YP_198643.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58424221|gb|AAW73258.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 874

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/816 (49%), Positives = 540/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 61  MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 120

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I   + +DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 121 ALAGHADDIVAKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 180

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 181 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 239

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS+ IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 240 KPSAAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 298

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 299 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 358

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 359 LTRVLGTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 418

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 419 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 478

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 479 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 538

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 539 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 598

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 599 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 658

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     +      E +Q   +     + NR      + +
Sbjct: 659 SANEAIARTAHRYDPALLTALIDLPPLDVETLQAEGNQHPALDALQAVLNRGTLGTARYQ 718

Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  +  N  + ++  R   G +   VL   +  S   +  R  S  + +       ++
Sbjct: 719 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 778

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 779 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 838

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 839 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 874


>gi|188574274|ref|YP_001911203.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518726|gb|ACD56671.1| DNA gyrase, B subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 814

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/816 (49%), Positives = 540/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I   + +DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVAKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS+ IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPSAAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLGTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLFT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     +      E +Q   +     + NR      + +
Sbjct: 599 SANEAIARTAHRYDPALLTALIDLPPLDVETLQAEGNQHPALDALQAVLNRGTLGTARYQ 658

Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  +  N  + ++  R   G +   VL   +  S   +  R  S  + +       ++
Sbjct: 659 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|194363782|ref|YP_002026392.1| DNA gyrase subunit B [Stenotrophomonas maltophilia R551-3]
 gi|194346586|gb|ACF49709.1| DNA gyrase, B subunit [Stenotrophomonas maltophilia R551-3]
          Length = 819

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/821 (49%), Positives = 537/821 (65%), Gaps = 20/821 (2%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD       N +YDA+SI  L+GL+AV+KRP MYIGD    +GLHHM++EV+DN+IDE+
Sbjct: 1   MSDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFN 110
           L G+AD + VT++ DGS +VSDNGRGIPT  H++        +SAAEV+MT LHAGGKF+
Sbjct: 61  LAGHADHVAVTIHADGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFD 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L + + + G  Y+  F NG    PL     +    G
Sbjct: 121 DNSYKVSGGLHGVGVSVVNALSQKLLVDVFQGGFHYQQEFSNGAAVTPLAKL-ESTTKRG 179

Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS+  F    +++YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI
Sbjct: 180 TTVRFWPSTVAFHDNVEYHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGI 238

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +L + K PL  + I + G  +NI +D+A++W D Y E + CFTNNIPQKDGGTHL
Sbjct: 239 RSFVEHLAQLKTPLHPNVISVTGEHNNIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHL 298

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVS
Sbjct: 299 AGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVS 358

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           S+VR  VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA 
Sbjct: 359 SDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAG 418

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML
Sbjct: 419 LPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRML 478

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           +S ++GTLITALGTGIG+D ++ +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI
Sbjct: 479 ASDQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELI 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI  PPLY I +GK   Y+KD+ +L+ YL + ++     +    +  I    L  
Sbjct: 539 ERGYVYIGLPPLYKIKQGKQELYLKDDPALDSYLASSAVENAALVPATGEPGIEGLALEK 598

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL-ASKLANRLNFIAEK 648
            +         I+     +D+  +E  V     + +S +          LA RLN  +  
Sbjct: 599 LLLTYAAAQDSIERNAHRYDRNVLEALVDFVPMDMDSLRNAGEGEGLDALAKRLNQGSLG 658

Query: 649 S-----EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
           S     E         + +LV R   G +   VL  S+  S   +     S+ +      
Sbjct: 659 SPRFTLELQEANEQRPAAVLVTRRHMGEELIQVLPLSAFESGELRAIHQASSLLHGLVRE 718

Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
              +      I++       + +    ++G  +QR+KGLGEMN  QLW+TT+NP+TR LL
Sbjct: 719 GAIISRGAKSIEVDTFAKAQNWLLEEAKRGRQIQRFKGLGEMNPEQLWDTTVNPETRRLL 778

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +V+I DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 QVRIEDAVAADQIFSTLMGDVVEPRRDFIEDNALKVANLDI 819


>gi|92112113|gb|ABE73747.1| DNA gyrase subunit B [Azoarcus communis]
          Length = 832

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/837 (45%), Positives = 527/837 (62%), Gaps = 39/837 (4%)

Query: 1   MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           MS+           ++YD  SIQ L+GL+AV+KRP MYIGDT   +GLHHM++EV+DN+I
Sbjct: 1   MSEPQNQPVQPAAENAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNSI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGK 108
           DE+L G+ D I +T++ D S +V+DNGRGIP      D H E   SAAE++M  LHAGGK
Sbjct: 61  DEALAGHCDDIVITIHADNSISVADNGRGIPVGVKMDDKH-EPKRSAAEIVMCVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------ 156
           FNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G  + M F  GI              
Sbjct: 120 FNQNSYKVSGGLHGVGVSCVNALSKWLRLVVRRDGKKHFMEFNRGIPQDRVIEVVDGIET 179

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL + G +    GTEV +L   +IF   +++YD L  RLRELSFLN+ V+I L+D+R+ 
Sbjct: 180 SPLKIIGESS-KRGTEVHYLADEEIFGTVEYHYDILAKRLRELSFLNNGVKIRLLDQRTG 238

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG---------SRDNISIDLAMRWND 267
           +       + GG++ FV Y++R K  L  +     G             +++++AM+WND
Sbjct: 239 KE--EDFAFAGGVKGFVEYINRTKTVLHPTVFYAAGTTRIPTGAGHDAELAVEVAMQWND 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y E VLC+TNNIPQ DGGTHL+GLR+A+TR I  Y+E++  +KK K  + GDD REG  
Sbjct: 297 SYAEQVLCYTNNIPQADGGTHLTGLRAAMTRVINKYIEENEIAKKAKVDITGDDMREGLA 356

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
            VLS+KMPDP+F+SQTK KLVSSE R  VE  V + L  +L E+P++AK I  K+++A+ 
Sbjct: 357 CVLSVKMPDPKFASQTKMKLVSSEARPAVEEVVANKLGDFLLENPIDAKTICNKIVEAAR 416

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            RDAAR+AR++TRRKG+LD   LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR R+ 
Sbjct: 417 ARDAARKAREMTRRKGILDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKF 476

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPL+GKILNVE+ARFDK+L SQEI TLITALGT IG+D +   KLRYH+II+MTDAD
Sbjct: 477 QAILPLKGKILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRIILMTDAD 536

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY I  GK+  Y+KD+  L  +L+  +
Sbjct: 537 VDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKTELYIKDDHELNGHLLKLA 596

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
           L   +    +    I+   L       L  + +I+      D   ++  +   +     +
Sbjct: 597 LDGAVLTPREGAAPIADEALGGLARSYLLAEAVIRRLASYIDPEVLQAMLAHDIAISLDN 656

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
           ++   + A ++   L    +     +H       + ++R+  G ++   +E   + S   
Sbjct: 657 EDEARASADRIQPHLPEGLKLY-AEYHEEAEGWRLTIERLHHGNRKFGWVEHDFLVSGDY 715

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747
           +  R  S  I         +     +  +T     +  + +   +GI+ QRYKGLGEMN 
Sbjct: 716 RTIRTASESIAGLIGPGAEIRRGEKRQLVTRFADAITWLLNEVERGITKQRYKGLGEMNP 775

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            QLWETT++P  R LLRV+I DA  AD++F+ L+GD VEPRR FI+ N+L +  +D+
Sbjct: 776 DQLWETTMDPAVRRLLRVQIDDAIAADEIFTTLLGDNVEPRRAFIEGNALYAQNIDV 832


>gi|114797774|ref|YP_759281.1| DNA gyrase subunit B [Hyphomonas neptunium ATCC 15444]
 gi|114737948|gb|ABI76073.1| DNA gyrase, B subunit [Hyphomonas neptunium ATCC 15444]
          Length = 814

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 450/798 (56%), Positives = 574/798 (71%), Gaps = 13/798 (1%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGS 73
           SI++LKGLDAV+KRP MYIGDTD  SGLHHMIYEV+DN+IDE+L G+AD +TVTL  DGS
Sbjct: 22  SIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNSIDEALAGHADHVTVTLFPDGS 81

Query: 74  CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS 133
             V+DNGRGIP  LH  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS 
Sbjct: 82  AEVTDNGRGIPVGLHPSEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSD 141

Query: 134 WLKLRIKREGNIYEMSF-INGILDNPLVVTGSAGN------DTGTEVTFLPSSDIFSVQD 186
           WL+L I REG  + + F   G ++ PLV  G +         TGT + FL S+  F++ D
Sbjct: 142 WLELTIHREGKEHFVRFVEGGRVEAPLVTRGPSPKRENGKAYTGTALRFLASTSTFTMTD 201

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++  TL+HRLREL+FLNS V+I   D+R  EP EI + Y+GG++AFV ++DR K  L+  
Sbjct: 202 YDRKTLEHRLRELAFLNSGVKIIFRDEREAEPYEIILEYEGGVKAFVQHIDRQKSSLIGE 261

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI + G +D I+++ A+ W D YHE+VLCFTNNIPQ+DGGTHL+G R ALTR I  Y  +
Sbjct: 262 PIYVIGEKDGITVEAALEWTDTYHESVLCFTNNIPQRDGGTHLAGFRGALTRIINKYANE 321

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +KK K  + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES +N+ L  
Sbjct: 322 TGAAKKSKVEISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLINEKLGE 381

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           W EE+P +A+II++KV++A+  R+AAR+AR+LTRRK  LDI SLPGKLADC E+DP KSE
Sbjct: 382 WFEENPKKAQIIMEKVVEAAAAREAARKARELTRRKSALDITSLPGKLADCQEKDPAKSE 441

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +F+VEGDSAGGSAKQGRSR+NQAILPLRGKILNVERARFDKML S ++GTLI ALG GIG
Sbjct: 442 IFIVEGDSAGGSAKQGRSRDNQAILPLRGKILNVERARFDKMLGSDQVGTLIMALGAGIG 501

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D F+I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP +I NG+LYI +PPLY +TR
Sbjct: 502 RDEFNIAKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEIIENGYLYIAQPPLYKVTR 561

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           G+S +YVKD+  LE YLI +  + E  +  D    I+  DLR  +  A +    ++    
Sbjct: 562 GRSERYVKDDAELESYLIEEGTTGETLILAD-GTQIAGADLREQVHQAAQFRASLRRLAL 620

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
                 IE A ++G              A   A RLN +AE+ E +W G      ++++R
Sbjct: 621 RAPADLIEHAALTGA----MKPGAGQDEADATAARLNRLAEEGEDTWVGRFVEGALVLQR 676

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDT 725
             RGV E  VL  + + S  +      +  ++E Y     L    G +I + GP +LL  
Sbjct: 677 TVRGVDENAVLPPALMASQDAIRLSDRAVGLQELYAEQSILRHEKGGEISVNGPSTLLGA 736

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           +   GRKG+ +QRYKGLGEMNASQLWETTL+ + R+LL+VK+  A +AD+LF++LMGD V
Sbjct: 737 VLESGRKGLKIQRYKGLGEMNASQLWETTLDANARTLLQVKVEHADEADELFTKLMGDVV 796

Query: 786 EPRREFIQENSLPSALDI 803
           EPRREFI+E +L + +D+
Sbjct: 797 EPRREFIEEFALEAEVDV 814


>gi|148651822|ref|YP_001278915.1| DNA gyrase subunit B [Psychrobacter sp. PRwf-1]
 gi|148570906|gb|ABQ92965.1| DNA gyrase subunit B [Psychrobacter sp. PRwf-1]
          Length = 884

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/858 (45%), Positives = 530/858 (61%), Gaps = 63/858 (7%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   Y + +I++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I 
Sbjct: 30  EPEEYSSKNIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQID 89

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           + ++ D S +V DNGRGIP D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGV
Sbjct: 90  IIIHEDESVSVMDNGRGIPIDVHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 149

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L++ I REG+ Y+ ++ +G+ D+ +       N TGT++ F PS ++F+  
Sbjct: 150 SVVNALSKKLEMNIWREGHHYQQTYSDGVPDSDIQELEKT-NKTGTQIRFYPSPEVFTGT 208

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F++D L  RLRELSFLNS V+I L D+R+ +       +KGG+  FV+Y++  K+ L  
Sbjct: 209 VFDFDILAKRLRELSFLNSGVRIVLTDERTDKQHV--FEHKGGLSEFVAYINSGKEGLND 266

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
               +    D I ++ A++W D Y+E VLCFTNNIPQKDGGTHLSG RSALTR + SY++
Sbjct: 267 VFHFVSEQEDGIVVEAALQWTDTYNEKVLCFTNNIPQKDGGTHLSGFRSALTRCLNSYMD 326

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  +
Sbjct: 327 NEKLVKKEKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFN 386

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L EHP  AK I  K++DA+  RDAAR+AR+LTRRK  LDIA LPGKLADC E+DP  S
Sbjct: 387 DYLLEHPGAAKSIANKIIDAARARDAARKARELTRRKTTLDIAGLPGKLADCQEKDPALS 446

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+GTLITALG GI
Sbjct: 447 ELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGTLITALGCGI 506

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY I 
Sbjct: 507 GPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKIK 566

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +G+   Y+KD+E+L+ YL++ ++ E      +    I+   L   ++D  +   +     
Sbjct: 567 KGRQELYLKDDEALKAYLLSSTIDEMNLHISEDAPAITGQALETLLNDYNQTQLVKARLQ 626

Query: 606 PNHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIA----------------- 646
             +    ++          +     +       +L  +L                     
Sbjct: 627 IRYPAILLDALTHVPKLTTDMTYDFDAMTEWKQQLQAQLEHFGSDLRPSIELDNIHAPRT 686

Query: 647 --------------------------EKSEKSWHGSINNSD---------ILVKRIARGV 671
                                        E +      +SD           +      +
Sbjct: 687 DELSEAAKDANNQFKFKIGAKVDSPNSDIEDAEVVEGQDSDMLSTKPQWLPRITIYVHNL 746

Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-----NGDKIKITGPCSLLDTI 726
            + ++L+     S         S +          +             I     L   +
Sbjct: 747 AQHYLLDAGFFNSGEYARLMRLSKQWNTLLTESAFIRRDTTAGGSKDTLIRNFDHLWQQV 806

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
               R+G+S+QRYKGLGEMNA QLW+TT++P+ R +L+V I DA  AD LF  LMGD+VE
Sbjct: 807 MQEARRGLSVQRYKGLGEMNADQLWDTTMDPENRRMLKVTIEDAIAADHLFMCLMGDDVE 866

Query: 787 PRREFIQENSLPS-ALDI 803
           PRR+FI+EN+L    LDI
Sbjct: 867 PRRQFIEENALTVTNLDI 884


>gi|84621661|ref|YP_449033.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84365601|dbj|BAE66759.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 814

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/816 (49%), Positives = 540/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I   + +DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVAKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS+ IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPSAAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLGTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLFT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     +      E +Q   +     + NR      + +
Sbjct: 599 SANEAIARTAHRYDPALLTALIDLPPLDVETLQAEGNQHPALDALQAVLNRGTLGTARYQ 658

Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  +  N  + ++  R   G +   VL   +  S   +  R  S  + +       ++
Sbjct: 659 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKSHSITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|326575517|gb|EGE25442.1| DNA gyrase subunit B [Moraxella catarrhalis 101P30B1]
          Length = 819

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/821 (49%), Positives = 535/821 (65%), Gaps = 22/821 (2%)

Query: 1   MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M+DN  N          Y A ++++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+  
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I R+G  +  ++ +G+ D PL         TGT+
Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS +IF     F+YD L  RLRELSFLNS V+I L D+R+   +     +KGG+  
Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVSY++  K  L           D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG
Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR +  Y++    +KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE
Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+SVVE+ +++ LS +L E+P  AK+I  K++DA+  RDAAR+AR++TRRK  LDIA LP
Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + RGK   Y+KD E+L+ YL++ ++ +           ++   L   +
Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649
            D  +   +       +    ++   +   F+     D++     A  L N+LN +  K 
Sbjct: 598 KDYSQSQAIKAHLQSKYPSHLLDALTLLPKFDVSAIGDKQAVDEWALALENQLNDLEPKL 657

Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           +                +    V      +  Q++L+ + + S         S       
Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
                L        I     L   +    R+G+ +QRYKGLGEMN  QLWETT++P+ R 
Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D
Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818


>gi|285016825|ref|YP_003374536.1| DNA topoisomerase II (DNA gyrase subunit b) protein [Xanthomonas
           albilineans GPE PC73]
 gi|166362463|gb|ABY87167.1| DNA gyrase B [Xanthomonas albilineans]
 gi|283472043|emb|CBA14550.1| probable dna topoisomerase II (dna gyrase subunit b) protein
           [Xanthomonas albilineans]
          Length = 820

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/822 (48%), Positives = 532/822 (64%), Gaps = 21/822 (2%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D       N +YDA+SI  L+GL+AV+KRP MYIGD    +GLHHM++EV+DN+IDE+
Sbjct: 1   MTDEQNTHANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFN 110
           L G+AD + VT++ DGS +VSDNGRGIP   H +        +SAAEV+MT LHAGGKF+
Sbjct: 61  LAGHADHVAVTIHADGSVSVSDNGRGIPVGKHAQMSKKLDREVSAAEVVMTVLHAGGKFD 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I + G  Y+  + +G    PL          G
Sbjct: 121 DNSYKVSGGLHGVGVSVVNALSEKLLLDIFQGGFHYQQEYSHGAALAPLKQL-ETSAKRG 179

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F PS   F+   +F+YD L  RLRELSFLNS V+I L D+R  E R     Y+GGI
Sbjct: 180 TTLRFWPSVKAFNNNVEFHYDILARRLRELSFLNSGVKIVLADER-GEGRRDDFHYEGGI 238

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +L   K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL
Sbjct: 239 RSFVEHLAHLKTPLHPNVISVSGEHNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHL 298

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVS
Sbjct: 299 AGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVS 358

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           S+VR  VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA 
Sbjct: 359 SDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAG 418

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R NQA+LPLRGKILNVERARFD+ML
Sbjct: 419 LPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRRNQAVLPLRGKILNVERARFDRML 478

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           +S ++GTLITALGTGIG+D ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI
Sbjct: 479 ASDQVGTLITALGTGIGRDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELI 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI  PPLY + +GK   Y+KD+ +L  YL + ++     +    +  I+   L  
Sbjct: 539 ERGYVYIGLPPLYRLKQGKQELYLKDDNALNVYLASSAVEGAALIPASGEPPITGAALEK 598

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNF 644
            +      ++ +      +D   +   +     +      E ++  ++     + NR N 
Sbjct: 599 LLLLFASANETVVRNAHRYDPALLTALIDLPPLDVAQLEAEGERHPSLDALQMVLNRGNL 658

Query: 645 IAEKSEKSWHGSINNSD--ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
            + +    +  +       +L+ R   G +   V+  +   S   +  R  +  +     
Sbjct: 659 GSARYTLRFQPANEQRSATLLLVRRHMGEEMTQVVPMAVFESGELRALREVALALHGLVR 718

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
               ++       I+        +F   +KG  +QR+KGLGEMNA QLWETT+NPDTR L
Sbjct: 719 EGAQIVRGNKTQAISSFAQAHAWLFEEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRL 778

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L+V+I DA  AD +FS LMGD VEPRR+FI+EN+L    LDI
Sbjct: 779 LQVRIEDAVAADQIFSTLMGDVVEPRRDFIEENALKVANLDI 820


>gi|312794752|ref|YP_004027674.1| DNA gyrase subunit B [Burkholderia rhizoxinica HKI 454]
 gi|312166527|emb|CBW73530.1| DNA gyrase subunit B (EC 5.99.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 843

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/823 (46%), Positives = 543/823 (65%), Gaps = 25/823 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +++  ++SY   SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L G+ 
Sbjct: 25  ANSSADNSYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHC 84

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           + I V ++ D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q SYKVS
Sbjct: 85  NDIHVVIHADNSISVTDNGRGIPTDIKRDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 144

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALS WL+L ++R G  + + F  G++             +P+++ G  
Sbjct: 145 GGLHGVGVSCVNALSKWLRLTVRRGGKKHFLEFHRGVVQERVLEQRDGEQVSPMLLIGDT 204

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 205 E-NRGTEVHFLADDTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDQRSGKE--DDFAF 261

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K+ L Q+   + G +D + +++AM+WND ++ENVLCFTNNIPQ+DG
Sbjct: 262 AGGVKGFVEYINKTKQTLHQNIFHVVGEKDGVGVEVAMQWNDSFNENVLCFTNNIPQRDG 321

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 322 GTHMTGLRAAMTRVINKYITDTEIAKKAKIETTGDDMREGLSCVLSVKVPEPKFSSQTKD 381

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR+ VE  V   L  +L E P +AK+I  K++DA+  RDAAR+AR++TRRKGVL
Sbjct: 382 KLVSSEVRAPVEEVVAKALEQYLLETPNDAKVICGKIVDAARARDAARKAREMTRRKGVL 441

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+
Sbjct: 442 DGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARY 501

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK+LSS +I TLITALG GIG+D +++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM
Sbjct: 502 DKLLSSDQIVTLITALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQM 561

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P +I  G++YI +PPL+ +  GK  +Y+KD+  L  +++  +L     +  +    I  +
Sbjct: 562 PEMIERGYVYIAQPPLFKLKAGKDERYLKDQHELNQHMLKLALHGAELVPSEGVAPIVGD 621

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            L       L    ++      +D+  +E AV+ GV    + ++     A  L ++L   
Sbjct: 622 ALGELARSYLLAQAVVDRLSKLYDEAALE-AVMDGVTIDLTSEDATRQSAQALQDKLRDS 680

Query: 646 AEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           A K + S    +        + ++R   G  +  +++   + +   +     +N  +   
Sbjct: 681 ALKPDVSVLPQYDAVRELRSLRIERRHHGNIKVSIIDEEFLLTADFQQLANTANTFKGLI 740

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
                +      + +T   S +  + +   + +S QRYKGLGEMN  QLWETT++P  R 
Sbjct: 741 GVGAMIKRGERTMAVTDFKSAMKWLIADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRR 800

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 801 LLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 843


>gi|326571722|gb|EGE21735.1| DNA gyrase subunit B [Moraxella catarrhalis BC8]
          Length = 819

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/821 (49%), Positives = 535/821 (65%), Gaps = 22/821 (2%)

Query: 1   MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M+DN  N          Y A ++++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+  
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I R+G  +  ++ +G+ D PL         TGT+
Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS +IF     F+YD L  RLRELSFLNS V+I L D+R+   +     +KGG+  
Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVSY++  K  L           D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG
Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR +  Y++    +KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE
Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+SVVE+ +++ LS +L E+P  AK+I  K++DA+  RDAAR+AR++TRRK  LDIA LP
Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + RGK   Y+KD E+L+ YL++ ++ +           ++   L   +
Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649
            D  +   +       +    ++   +   F+     D++     A  L N+LN +  K 
Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLLPKFDVSAIGDKQAVDEWALALENQLNDLEPKL 657

Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           +                +    V      +  Q++L+ + + S         S       
Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
                L        I     L   +    R+G+ +QRYKGLGEMN  QLWETT++P+ R 
Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D
Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818


>gi|326560704|gb|EGE11072.1| DNA gyrase subunit B [Moraxella catarrhalis 46P47B1]
 gi|326563089|gb|EGE13362.1| DNA gyrase subunit B [Moraxella catarrhalis 12P80B1]
 gi|326574364|gb|EGE24307.1| DNA gyrase subunit B [Moraxella catarrhalis CO72]
          Length = 819

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/821 (48%), Positives = 533/821 (64%), Gaps = 22/821 (2%)

Query: 1   MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M+DN  N          Y A ++++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+  
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I R+G  +  ++ +G+ D PL         TGT+
Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS +IF     F+YD L  RLRELSFLNS V+I L D+R+   +     +KGG+  
Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVSY++  K  L           D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG
Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR +  Y++    +KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE
Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+SVVE+ +++ LS +L E+P  AK+I  K++DA+  RDAAR+AR++TRRK  LDIA LP
Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+GTLITALGTGIG   ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 478 AEVGTLITALGTGIGPGEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + RGK   Y+KD E+L+ YL++ ++ +           ++   L   +
Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649
            D  +   +       +    ++   +    +     D++     A  L N+LN +  K 
Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPKLDVSAIGDKQAVDEWALALENQLNDLEPKL 657

Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           +                +    V      +  Q++L+ + + S         S       
Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
                L        I     L   +    R+G+ +QRYKGLGEMN  QLWETT++P+ R 
Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D
Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818


>gi|33519500|ref|NP_878332.1| DNA gyrase subunit B [Candidatus Blochmannia floridanus]
 gi|33517163|emb|CAD83545.1| DNA gyrase subunit B [Candidatus Blochmannia floridanus]
          Length = 806

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/806 (49%), Positives = 534/806 (66%), Gaps = 14/806 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           SSYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE + GY + I VT
Sbjct: 3   SSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEVISGYCNKILVT 62

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +V D+GRGIPT LH+E GISAAEVIMT LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 63  IHQDNSVSVKDDGRGIPTGLHEESGISAAEVIMTVLHAGGKFDNTNYKVSGGLHGVGVSV 122

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186
           VNALS  L+L I+R+  IY+  F  G   +PL V G +   +GT + F P+  IF +  +
Sbjct: 123 VNALSEKLELIIERDFKIYKQVFYLGKPKSPLSVVGESK-KSGTMIRFWPNLHIFTNKTE 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+ L  R +EL+FLNS V I L D R+ +      +  GGI+AF+ YL+  K P+  +
Sbjct: 182 FQYEILARRFKELAFLNSGVSIILRDFRNNKE--DIFYCNGGIKAFIKYLNVKKTPIHSN 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                G +  I I +A++WND + E +  FTNNIPQ+DGGTHLSGL+SA+TR I  Y++K
Sbjct: 240 IFYYSGYKGEIGIKVALQWNDSFQERIYSFTNNIPQRDGGTHLSGLKSAITRTIHFYIDK 299

Query: 307 SFGSKKDKRSVI-GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              + K  + V  GDD REG  +VLSI +P+P+FSSQTK+KL+SSEV++ VES + + L 
Sbjct: 300 EGYNNKKDKIVTMGDDVREGLVAVLSIYIPNPKFSSQTKDKLISSEVKTAVESLIYEKLI 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +  E+P ++K I+ KV+ A+  R++AR+ RDL+RRKGV D + LPGKLADC E++P  S
Sbjct: 360 EFFLENPSDSKSIINKVISAARARESARKIRDLSRRKGVSDFSVLPGKLADCQEKNPVYS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+ +LITALG GI
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSPEVMSLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           GQ+ +++NKLRYH II+MTDADVDGAHIRTLLLTFF+R MP +I  G ++I +PPLY + 
Sbjct: 480 GQNEYNLNKLRYHSIILMTDADVDGAHIRTLLLTFFYRYMPEIIDKGHIFIAQPPLYKVQ 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +G   QY+KDEE +  Y I+ ++             IS+  L   I +   I K+I    
Sbjct: 540 KGNQSQYIKDEEEMYQYQISMAVRYACLYVDPYAPPISEEVLEQLIFERYLIQKIIIRME 599

Query: 606 PNHDKTFIEQAVISGVF-NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN----- 659
               K  + Q +   V    +    ++V +  K    L   +EK    +   I N     
Sbjct: 600 RQFPKELLNQLIFHSVLSEKQWSNYVDVEIWMKSLIELLKRSEKYGSHYSFIIRNNNKEN 659

Query: 660 -SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT 717
             + +++    G+   + L    I S+  +    F  ++ E  L+  S I    D+ KI 
Sbjct: 660 FFEPILRIRTYGIDTDYPLGIDFIKSYEYRKLVTFGKKMNELLLSNHSYIQYKNDRKKIN 719

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                ++ +    RKG+ +QRYKGLGEMN  QLWETT+NP  R +L+V + DA +AD+LF
Sbjct: 720 SFDQAIEWLMQESRKGLIIQRYKGLGEMNPDQLWETTMNPKNRCMLKVTVRDALEADNLF 779

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALD 802
           S LMGD VEPRR FI++N+L +  +D
Sbjct: 780 STLMGDVVEPRRIFIEDNALKAKNVD 805


>gi|326578064|gb|EGE27924.1| DNA gyrase subunit B [Moraxella catarrhalis O35E]
          Length = 819

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/821 (48%), Positives = 533/821 (64%), Gaps = 22/821 (2%)

Query: 1   MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M+DN  N          Y A ++++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+  
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I R+G  +  ++ +G+ D PL         TGT+
Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS +IF     F+YD L  RLRELSFLNS V+I L D+R+   +     +KGG+  
Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVSY++  K  L           D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG
Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR +  Y++    +KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE
Sbjct: 298 FRSALTRCLNYYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+SVVE+ +++ LS +L E+P  AK+I  K++DA+  RDAAR+AR++TRRK  LDIA LP
Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+GTLITALGTGIG   ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 478 AEVGTLITALGTGIGPGEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + RGK   Y+KD E+L+ YL++ ++ +           ++   L   +
Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649
            D  +   +       +    ++   +    +     D++     A  L N+LN +  K 
Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPRLDVSAIGDKQAVDEWALALENQLNDLEPKL 657

Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           +                +    V      +  Q++L+ + + S         S       
Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
                L        I     L   +    R+G+ +QRYKGLGEMN  QLWETT++P+ R 
Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D
Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818


>gi|326571823|gb|EGE21829.1| DNA gyrase subunit B [Moraxella catarrhalis BC7]
          Length = 819

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/821 (48%), Positives = 534/821 (65%), Gaps = 22/821 (2%)

Query: 1   MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M+DN  N          Y A ++++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+  
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I R+G  +  ++ +G+ D PL         TGT+
Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS +IF     F+YD L  RLRELSFLNS V+I L D+R+   +     +KGG+  
Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVSY++  K  L           D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG
Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR +  Y++    +KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE
Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+SVVE+ +++ LS +L E+P  AK+I  K++DA+  RDAAR+AR++TRRK  LDIA LP
Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + RGK   Y+KD E+L+ YL++ ++ +           ++   L   +
Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649
            D  +   +       +    ++   +    +     D++     A  L N+LN +  K 
Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPKLDVSAIGDKQAVDEWALALENQLNDLEPKL 657

Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           +                +    V      +  Q++L+ + + S         S       
Sbjct: 658 DTKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
                L        I     L   +    R+G+ +QRYKGLGEMN  QLWETT++P+ R 
Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D
Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818


>gi|71891809|ref|YP_277538.1| DNA gyrase, subunit B [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71795915|gb|AAZ40666.1| DNA gyrase, subunit B [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 804

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/804 (48%), Positives = 533/804 (66%), Gaps = 12/804 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+YD+ SI+ILKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE++ GY   I V 
Sbjct: 3   SAYDSSSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEAISGYCKKIVVI 62

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 63  IHQDHSVSVQDDGRGIPTGIHEEEGVSAAEVIMTILHAGGKFDNSNYKVSGGLHGVGVSV 122

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQD 186
           VNALS  L+L IKR+   Y+  +  G   +PL + G + + +GT V F PS   F+   +
Sbjct: 123 VNALSERLELVIKRDFKTYKQVYCEGRPLSPLEIIGDSKH-SGTIVRFWPSLKTFTGKTE 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F YD L  R RELSFLNS + I L D R+ +         GG++AFV YL  +K P+  +
Sbjct: 182 FQYDILARRFRELSFLNSGIVIILRDCRNNKE--ENFHCAGGVKAFVKYLSVNKTPIHPN 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                G++  ISI++A++WND + E +  FTNNIPQ+DGGTHL+GLR+A+TR +  Y++K
Sbjct: 240 IFYYLGNKGEISIEVALQWNDNFQEKIYSFTNNIPQRDGGTHLAGLRAAITRTMHFYMDK 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              ++K K   IGDD REG  ++LSIK+PDP+FSSQTK+KLVSSEV++ VES V + L  
Sbjct: 300 EGYNRKVKVVTIGDDAREGLVAILSIKIPDPKFSSQTKDKLVSSEVKTAVESLVYEKLIE 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +  E+P+++K I+ KV+ A+  R+AAR+ RDLTRRKG+ + ++LPGKLADC E++P  SE
Sbjct: 360 FFLENPIDSKNIINKVIGAARAREAARKIRDLTRRKGLSEFSTLPGKLADCQEKNPVYSE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GIG
Sbjct: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLTSQEVMTLITALGCGIG 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            + ++ +KLRYH II+MTDADVDGAHIRTLLLTFF+RQMP +I  G ++I +PPLY + +
Sbjct: 480 PNEYNPDKLRYHNIIVMTDADVDGAHIRTLLLTFFYRQMPEIIERGHIFIAQPPLYKVQK 539

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           G+  +Y+KDEE++  Y I+ ++             +    L   + +   I K+I     
Sbjct: 540 GRQERYLKDEEAMSKYQISIAVGSSRFYINPDTPPLKGKILEQLVFEYYLIQKIIVRMEH 599

Query: 607 NHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSW-----HGSINN 659
              K  + + +   V + E     E        L + L+   E           H     
Sbjct: 600 QFPKILLNRLIYHSVLSEEQCYCYESVKIWMRSLVDSLSSFEEYGSSYDFVILKHHENEY 659

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            + +++    G+   +VL    I S   K    F  ++ E +L+   +     + ++   
Sbjct: 660 FEPILRIRTYGINIDYVLSIDFIKSHEYKKLVSFGMQMNELFLSDAYIEYGIYRKQVHSF 719

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
              ++ +    RKG+ +QRYKGLGEMN  QLWETT+NP  R +LRV I DA +AD LF+ 
Sbjct: 720 DQAMEWLMQESRKGLVIQRYKGLGEMNPDQLWETTMNPKNRCMLRVTIKDAIEADHLFTT 779

Query: 780 LMGDEVEPRREFIQENSLPS-ALD 802
           LMGD VEPRR FI++N+L +  +D
Sbjct: 780 LMGDLVEPRRAFIEKNALKATNVD 803


>gi|300309349|ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seropedicae SmR1]
 gi|300072134|gb|ADJ61533.1| DNA gyrase subunit B protein [Herbaspirillum seropedicae SmR1]
          Length = 832

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/828 (46%), Positives = 528/828 (63%), Gaps = 31/828 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N    SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L GY  
Sbjct: 9   TNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCS 68

Query: 63  IITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            I VT++ D S +++DNGRGIPT     D H E   SAAE++MT LHAGGKF+Q SYKVS
Sbjct: 69  EIHVTIHADNSISITDNGRGIPTGLKMDDKH-EPKRSAAEIVMTELHAGGKFDQNSYKVS 127

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALS  LKL I+R+G ++ M F  GI+             +P+ V G +
Sbjct: 128 GGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSPIKVIGES 187

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            +  GTEV F    +IF+  +F+Y+ L  R+RELSFLN+ V I L D+R+ +       +
Sbjct: 188 -DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKE--EDFAF 244

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNI 280
           +GG   FV Y++++K  L  +  +  G +       I++D++M+WND ++E VLCFTNNI
Sbjct: 245 EGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCFTNNI 304

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  + GDD REG T VLS+K+P+P+FS
Sbjct: 305 PQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPEPKFS 364

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR+LTR
Sbjct: 365 SQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKARELTR 424

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGV+D   L  KLADC ERDP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 425 RKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 484

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+ARF+KMLSS++I TLI  LGT IG D F+ +KLRYH+IIIMTDADVDGAHIRTLLLT 
Sbjct: 485 EKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTLLLTL 544

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP+L+  G +YI +PPLY +  GK  +Y+KD+     Y++  +L++      +   
Sbjct: 545 FYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPAEDAP 604

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            I+   L          + +I       D++ ++  +  GV     + E   + A +L  
Sbjct: 605 AITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAEELKK 664

Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
            +N I    +           + + R   G  +  V++   +     +     +   +  
Sbjct: 665 AINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAETFKGL 724

Query: 701 YLTILSLICN-GDKIK---ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
                ++    G+K K   IT     +  +     +G++ QRYKGLGEMN  QLWETT++
Sbjct: 725 IRKGATVARGQGEKRKESVITDFRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWETTMD 784

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LL+V+I DA  AD +F  LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 785 PTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832


>gi|294085122|ref|YP_003551882.1| DNA gyrase,subunit B [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664697|gb|ADE39798.1| DNA gyrase, B subunit [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 816

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/820 (53%), Positives = 569/820 (69%), Gaps = 21/820 (2%)

Query: 1   MSDNIQNS-----------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVL 49
           MS++ + +            Y A+SI++L+GLDAV+KRP MYIGDTD  SGLHHM+YEV+
Sbjct: 1   MSEDEKTNIPDQAAAAVDGDYGAESIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVV 60

Query: 50  DNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           DNAIDE+L G+ D++ V LN DGS +V+DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF
Sbjct: 61  DNAIDEALAGHCDLVQVVLNADGSISVTDNGRGIPVDIHHEEGVSAAEVIMTQLHAGGKF 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS WL+L I R G  +EM F  G  D  L   G A   T
Sbjct: 121 DNNSYKVSGGLHGVGVSVVNALSEWLRLTIFRNGRKHEMMFKMGEADGALADMGDAEGQT 180

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT VTF PS DIFS  +F++ TL+HRLREL+FLNS V+I + D R+ E R    F++GG+
Sbjct: 181 GTHVTFYPSLDIFSSIEFDFTTLEHRLRELAFLNSGVRIKMTDNRTSEERVSEFFFEGGL 240

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           EAFV++L+R +  +  +   I   RD+I+++LA+ W D +HEN LCFTNNIPQ+DGG HL
Sbjct: 241 EAFVTWLNRSRSEMHPTITAIS-QRDDITVELALAWTDSFHENTLCFTNNIPQRDGGAHL 299

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R A+TR + +Y + S  +KK+K  + G+D REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 300 AGFRGAMTRVVNNYAQSSGIAKKEKVQLTGEDSREGLTAIVSVKVPDPKFSSQTKDKLVS 359

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR VVE  V D L+ W EEHP EAK IV K  +A+  R+AAR+ARDLTRRKGV+DIAS
Sbjct: 360 SEVRPVVEQAVADCLNQWFEEHPAEAKKIVSKAYEAAAAREAARKARDLTRRKGVMDIAS 419

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP KSE+FLVEGDSAGGSAKQGR R NQAILPLRGKILNVERAR DKML
Sbjct: 420 LPGKLADCQERDPAKSEIFLVEGDSAGGSAKQGRDRANQAILPLRGKILNVERARLDKML 479

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SS EIGTLITA+G G+G     ++K+RYHKI+IMTDADVDG+HIRTLLLTFFFR M  LI
Sbjct: 480 SSAEIGTLITAIGAGVGNTEMQLDKVRYHKIVIMTDADVDGSHIRTLLLTFFFRHMRPLI 539

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G+LYI +PPL+   RG+S  Y+KD+  L+ YL+   L + + +  D    ++  DLR+
Sbjct: 540 EQGYLYIAQPPLFRAKRGQSEVYLKDQRELDIYLMTAGLKDTVLVV-DGGSQMAGPDLRD 598

Query: 590 FIDDALKIDKLIKDFYPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
             ++A+   +LI+       ++  +EQA I+G+    +        A+ LA RL  + ++
Sbjct: 599 VTNNAVTASRLIEQITRQVGNRDVVEQAAIAGLMKSATLDSA--DAATYLATRLENVVDE 656

Query: 649 SEKSWHGSINN----SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
            EK W GSI +      I+V+R  RG+ E++V++   +    +      +  +++ Y   
Sbjct: 657 LEKGWQGSIEDTVHGKAIVVQRRLRGITEKYVIDRRIVGLPEAVQLDSMAPHLQQIYAKF 716

Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
            +L        I GP  L   +F  GRKG  + RYKGLGEMN  QLWETTL+PD R+ L+
Sbjct: 717 ATLTGTSQNTIIHGPSDLAQLVFQTGRKGAQISRYKGLGEMNPDQLWETTLDPDQRTFLQ 776

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           V I     AD+ FS LMG+ VE RR FIQ N+L    LDI
Sbjct: 777 VVIEHEEDADNAFSTLMGEAVEERRNFIQTNALRVANLDI 816


>gi|294627435|ref|ZP_06706019.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292598256|gb|EFF42409.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 814

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/816 (50%), Positives = 539/816 (66%), Gaps = 15/816 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +  DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKILADGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650
             ++ I      +D   +   +     +      E DQ   +     + NR      + +
Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQ 658

Query: 651 KSWH-GSINNSDILVKRIARGVQE-QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
             +  GS N    LV       +E   VL   +  S   +  R  S  + +       ++
Sbjct: 659 LRFDPGSDNAPATLVAIRRHMAEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  IT        +    +KG  +QR+KGLGEM+A QLWETT+NPDTR LL+V+I 
Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMSAEQLWETTVNPDTRRLLQVRIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814


>gi|124483570|emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity,
           protein [Herbaspirillum seropedicae]
          Length = 832

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/828 (46%), Positives = 525/828 (63%), Gaps = 31/828 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N    SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L GY  
Sbjct: 9   TNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCS 68

Query: 63  IITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            I VT++ D S +++DNGRGIPT     D H E   SAAE++MT LHAGGKF+Q SYKVS
Sbjct: 69  EIHVTIHADNSISITDNGRGIPTGLKMDDKH-EPKRSAAEIVMTELHAGGKFDQNSYKVS 127

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALS  LKL I+R+G ++ M F  GI+             +P+ V G +
Sbjct: 128 GGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSPIKVIGES 187

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            +  GTEV F    +IF+  +F+Y+ L  R+RELSFLN+ V I L D+R+ +       +
Sbjct: 188 -DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKE--EDFAF 244

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNI 280
           +GG   FV Y++++K  L  +  +  G +       I++D++M+WND ++E VLCFTNNI
Sbjct: 245 EGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCFTNNI 304

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  + GDD REG T VLS+K+P+P+FS
Sbjct: 305 PQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPEPKFS 364

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR+LTR
Sbjct: 365 SQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKARELTR 424

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGV+D   L  KLADC ERDP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 425 RKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 484

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+ARF+KMLSS++I TLI  LGT IG D F+ +KLRYH+IIIMTDADVDGAHIRTLLLT 
Sbjct: 485 EKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTLLLTL 544

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP+L+  G +YI +PPLY +  GK  +Y+KD+     Y++  +L++      +   
Sbjct: 545 FYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPAEDAP 604

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            I+   L          + +I       D++ ++  +  GV     + E   + A +L  
Sbjct: 605 AITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAEELKK 664

Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
            +N I    +           + + R   G  +  V++   +     +     +   +  
Sbjct: 665 AINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAETFKGL 724

Query: 701 YLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
                ++         +  IT     +  +     +G++ QRYKGLGEMN  QLWETT++
Sbjct: 725 IRKGATVARGQCEKRKESVITDFRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWETTMD 784

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LL+V+I DA  AD +F  LMGD+VEPRR FI+ N+L +  +D+
Sbjct: 785 PTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832


>gi|326569033|gb|EGE19102.1| DNA gyrase subunit B [Moraxella catarrhalis BC1]
          Length = 819

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/821 (49%), Positives = 534/821 (65%), Gaps = 22/821 (2%)

Query: 1   MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M+DN  N          Y A ++++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+ D I + ++ D S +V DNGRGIP D H EEG+SAAEVIMT LHAGGKF+  
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDTHPEEGVSAAEVIMTVLHAGGKFDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I R+G  +  ++ +G+ D PL         TGT+
Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS +IF     F+YD L  RLRELSFLNS V+I L D+R+   +     +KGG+  
Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVSY++  K  L           D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG
Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR +  Y++    +KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE
Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+SVVE+ +++ LS +L E+P  AK+I  K++DA+  RDAAR+AR++TRRK  LDIA LP
Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + RGK   Y+KD E+L+ YL++ ++ +           ++   L   +
Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649
            D  +   +       +    ++   +   F+     D++     A  L N+LN +  K 
Sbjct: 598 KDYSQSQAIKAHLQSKYPSHLLDALTLLPKFDVSAIGDKQAVDEWALALENQLNDLEPKL 657

Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           +                +    V      +  Q++L+ + + S         S       
Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
                L        I     L   +    R+G+ +QRYKGLGEMN  QLWETT++P+ R 
Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D
Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818


>gi|71064585|ref|YP_263312.1| DNA gyrase subunit B [Psychrobacter arcticus 273-4]
 gi|71037570|gb|AAZ17878.1| DNA gyrase subunit B [Psychrobacter arcticus 273-4]
          Length = 871

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/843 (46%), Positives = 530/843 (62%), Gaps = 50/843 (5%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y +  I++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + 
Sbjct: 32  SDYSSKDIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDII 91

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +V DNGRG+P D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 92  IHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 151

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  L++ I REG  +  ++ +G+ D+ +     A + TGT++ F PS+D+F+   F
Sbjct: 152 VNALSKKLEMNIWREGYHHHQTYTDGVPDSDIQQ-MEATDQTGTQIRFYPSNDVFTGTIF 210

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FVSY++  K  +    
Sbjct: 211 EYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINDVF 268

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             I    D IS+++A++W D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + +Y+++ 
Sbjct: 269 HFISNQEDGISVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRE 328

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              KK+K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +
Sbjct: 329 NLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDY 388

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L+E+P   K+I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL
Sbjct: 389 LQENPSAGKLIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSEL 448

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSSQE+G LITALG GIG 
Sbjct: 449 YIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGP 508

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G
Sbjct: 509 DEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKG 568

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           +   Y+KD+E+L+ YL++ ++             I+   L   ++D  +   +       
Sbjct: 569 RQELYLKDDEALKAYLLSSTIDNTRLHISADAPAITGQALETLLNDYNQTQLIKARLQIR 628

Query: 608 HDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE------------------ 647
           +    ++    +   + +   D++   +    L  +L                       
Sbjct: 629 YPAVLLDALTHTPKLSTDMTYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKN 688

Query: 648 ---------------KSEKSWHGSINNSDI------LVKRIARGVQEQFVLEGSSIFSFG 686
                          + E+          I       +      +   ++L+ S I S  
Sbjct: 689 MDAAAADLLGMKPVVEVEEGNSSEAEAPSIKAQWLPRITVYVHQLAHHYLLDASFINSGE 748

Query: 687 SKYKRIFSNRIEENYLTILSLICN-----GDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                  S            +           I +     L   +    R+G+++QRYKG
Sbjct: 749 YTKLLRLSAEWNTLLDVDAFIRREATAGTSKDIPVRDFDYLWQQMMLDARRGLAIQRYKG 808

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800
           LGEMNA QLW+TT++P+ R +LRV I DA  AD +F+ LMGD VEPRR FI+EN+L    
Sbjct: 809 LGEMNADQLWDTTMDPENRRMLRVNIEDAIAADHMFTCLMGDHVEPRRIFIEENALTVSN 868

Query: 801 LDI 803
           LDI
Sbjct: 869 LDI 871


>gi|163751706|ref|ZP_02158925.1| DNA gyrase, B subunit [Shewanella benthica KT99]
 gi|161328445|gb|EDP99601.1| DNA gyrase, B subunit [Shewanella benthica KT99]
          Length = 781

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/784 (49%), Positives = 519/784 (66%), Gaps = 13/784 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  SGLHHM++EV+DN+IDE+L G+   I + ++ DGS +V D+GRGIP D+H 
Sbjct: 1   MYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCSEIVIIIHTDGSVSVKDDGRGIPVDIHP 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  
Sbjct: 61  EEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLQLIIRRNGKLYEQF 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQI 208
           +  G+ D P+   G A   TGTE+ F PS   F +  +F++D L  R+RELSFLNS V I
Sbjct: 121 YTMGVPDAPIKEIGDAT-STGTELRFWPSHKTFTNNIEFHFDILVKRVRELSFLNSGVGI 179

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWND 267
            LID+R  + R+    Y+GGI AFV YL+ +K P+ +        RD+ I++++AM+WND
Sbjct: 180 RLIDER--DNRDEFFEYQGGISAFVDYLNINKTPVNKDVFHFIHERDDGITVEVAMQWND 237

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+E+   +KK K S  GDD REG T
Sbjct: 238 GYQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLT 297

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L  +L EHP EA++IV K++DAS 
Sbjct: 298 AVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLMEHPTEARLIVGKIIDASR 357

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+N
Sbjct: 358 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKN 417

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG D +D +K RYH I+IMTDAD
Sbjct: 418 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGPDEYDPDKTRYHNIVIMTDAD 477

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDG+HIRTLLLTFFFRQMP LI  G++YI +PPLY + +G+  QY+KDE +L ++L N +
Sbjct: 478 VDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKVKKGRQEQYLKDELALTEFLTNLA 537

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES- 626
           L             IS   L   +    +I+ +       +     E+ +     + +  
Sbjct: 538 LDGGELHSSADAPAISGVPLEKLVYQYREIETIFARLEQRYPTLLTERMLYHPALDADML 597

Query: 627 -DQEINVSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
            D+             L          K+E             V     G+   ++    
Sbjct: 598 ADEAKVKQWCDAFVADLTEKESGGVIYKAEPFMDPERKVYLPNVHIRKHGIDTSYLFTYE 657

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
            + S   +     +  +E   +    +       +I+     L+ + +  R+G+ +QRYK
Sbjct: 658 FLNSSDYERMTKLAEALEGLIVEGGFIKRGERMKEISTFVEALNWLMNDSRRGLYIQRYK 717

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT++P++R +L V I DA  AD LF+ LMGD+VEPRR+FI++N+L   
Sbjct: 718 GLGEMNPEQLWETTMDPESRRMLVVTIEDAIGADQLFTCLMGDQVEPRRKFIEDNALNVA 777

Query: 800 ALDI 803
            LD+
Sbjct: 778 NLDV 781


>gi|326561746|gb|EGE12081.1| DNA gyrase subunit B [Moraxella catarrhalis 7169]
          Length = 819

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/821 (48%), Positives = 533/821 (64%), Gaps = 22/821 (2%)

Query: 1   MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M+DN  N          Y A ++++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+ D I + ++ D S +V DNGRGIP D H EEG+SAAEVIMT LHAGGKF+  
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDTHPEEGVSAAEVIMTVLHAGGKFDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I R+G  +  ++ +G+ D PL         TGT+
Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS +IF     F+YD L  RLRELSFLNS V+I L D+R+   +     +KGG+  
Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVSY++  K  L           D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG
Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR +  Y++    +KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE
Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+SVVE+ +++ LS +L E+P  AK+I  K++DA+  RDAAR+AR++TRRK  LDIA LP
Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + RGK   Y+KD E+L+ YL++ ++ +           ++   L   +
Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649
            D  +   +       +    ++   +    +     D++     A  L N+LN +  K 
Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPRLDVSAIGDKQAVDEWALALENQLNDLEPKL 657

Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           +                +    V      +  Q++L+ + + S         S       
Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
                L        I     L   +    R+G+ +QRYKGLGEMN  QLWETT++P+ R 
Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D
Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818


>gi|326562313|gb|EGE12639.1| DNA gyrase subunit B [Moraxella catarrhalis 103P14B1]
          Length = 819

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/821 (48%), Positives = 534/821 (65%), Gaps = 22/821 (2%)

Query: 1   MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M+DN  N          Y A ++++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+  
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I R+G  +  ++ +G+ D PL         TGT+
Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILNIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS +IF     F+YD L  RLRELSFLNS V+I L D+R+   +     +KGG+  
Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVSY++  K  L           D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG
Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR +  Y++    +KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE
Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+SVVE+ +++ LS +L E+P  AK+I  K++DA+  RDAAR+AR++TRRK  LDIA LP
Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + RGK   Y+KD E+L+ YL++ ++ +           ++   L   +
Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649
            D  +   +       +    ++   +    +     D++     A  L N+LN +  K 
Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPKLDVSAIGDKQAVDEWALALENQLNDLEPKL 657

Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           +                +    V      +  Q++L+ + + S         S       
Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
                L        I     L   +    R+G+ +QRYKGLGEMN  QLWETT++P+ R 
Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D
Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818


>gi|269799058|gb|ACZ43807.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 781

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/789 (49%), Positives = 527/789 (66%), Gaps = 17/789 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN----NYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 57  CTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS +
Sbjct: 117 HGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K
Sbjct: 176 TFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 235 TPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRT 294

Query: 300 ITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
           + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE 
Sbjct: 295 LNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLADC 
Sbjct: 355 AMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLI
Sbjct: 415 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+G GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +
Sbjct: 475 TAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQ 534

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + +GK  +Y+KD+  L  YL   +L +           I    L + ++   KI+
Sbjct: 535 PPLYKMKKGKQERYIKDDADLTQYLTTIALDDAGLFVNADAPAIRGAALEDLVNGYRKIE 594

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSEK 651
            L+     +  K F  + +   V   E   D+    + A +L   L           +  
Sbjct: 595 SLMGKLNRSLPKVFTNEMIYQSVLTAEMLTDEASTTAWAEELVATLTAKEVTGTLYSARV 654

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           +          ++     G+   +        S            I         +    
Sbjct: 655 AQDEESQLFYPVLSIRQHGLDTSYDFTPGFFNSKEYATLTGLG--IANLLEEGAYIKRGE 712

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
              ++T     L+ + +  ++G  +QRYKGLGEMN SQLWETT++P+TR +L+V+I DA 
Sbjct: 713 KSREVTNFVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPETRRMLQVRIEDAV 772

Query: 772 QADDLFSRL 780
            AD LF+ L
Sbjct: 773 AADQLFTTL 781


>gi|103488449|ref|YP_618010.1| DNA gyrase, B subunit [Sphingopyxis alaskensis RB2256]
 gi|98978526|gb|ABF54677.1| DNA gyrase subunit B [Sphingopyxis alaskensis RB2256]
          Length = 858

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/848 (51%), Positives = 569/848 (67%), Gaps = 49/848 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +     ++Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+L G+ 
Sbjct: 14  AKQPNANAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHC 73

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKVS 117
           D+I +TLN DGS +V DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF    +  +YKVS
Sbjct: 74  DLILITLNSDGSVSVEDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVS 133

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFL 176
           GGLHGVGVSVVNALS WL+L I R+G  + M F +G    PL V G A     GT VTF 
Sbjct: 134 GGLHGVGVSVVNALSEWLELTIWRDGQEHWMRFEHGDAVAPLRVNGPAPAGKKGTRVTFQ 193

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            S+D F    +F+++ L+HR REL+FLNS V+I L+D R  E     +FY+GGI AFV Y
Sbjct: 194 ASTDTFKNVTEFDFEKLEHRYRELAFLNSGVRIKLVDARHAEHVSHDLFYEGGIAAFVKY 253

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR+K PL+  PI I   RD I ID+A+ WND Y+ENVLCFTNNIPQ+DGGTHL+  R+A
Sbjct: 254 LDRNKTPLLPDPIAISSERDGIGIDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAFRAA 313

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +  Y EKS   KK+K S+ G+D REG T+++S+K+PDP+FSSQTK+KLVSSEVR  
Sbjct: 314 LTRTLNGYGEKSGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQP 373

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +ES + D ++ WLEE+P  AK +++KV+DA+  R+AA++AR+LTRRKG +DIASLPGKLA
Sbjct: 374 LESLMADRMTEWLEENPAYAKAVIQKVVDAAAAREAAKKARELTRRKGAMDIASLPGKLA 433

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP K ELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVERARFD+++SS+E+G
Sbjct: 434 DCQERDPAKCELFLVEGDSAGGSAKQGRDRHVQAILPLKGKILNVERARFDRIISSKEVG 493

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLI ALGTGI +D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP +I  G LY
Sbjct: 494 TLIQALGTGI-RDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPEIIEKGHLY 552

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY + +G+S  Y+KD+ +LE+YL++  +     +   + G  S  DLR  I+   
Sbjct: 553 IAQPPLYKVAKGRSEVYLKDDSALENYLVDGGID--ALMLETTGGARSGADLRGLIEHGR 610

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK----SEK 651
           ++  L++     H+   +E   ++G  +   D     + A + A  LN         +E 
Sbjct: 611 RLRALMRYVPRGHNYGLVEALALNGALDPALDSAGRTAAAVRAAEWLNAAERALTGGAEA 670

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            W  +       +++  RGV +   ++ + + S  ++     +    E Y     L+   
Sbjct: 671 KWTITAAGGGYTLEKRWRGVSDHHAIDAAFLASQEARRLHTLAAEQAETYAHPARLVKGS 730

Query: 712 -----------------------------------DKIKITGPCSLLDTIFSIGRKGISM 736
                                                  IT P  LL+ IF+  RKG+++
Sbjct: 731 SAAALAADAAALAATEAAEDDAEASDGDLPAATARKVTPITRPSELLEAIFAHSRKGLAI 790

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
            RYKGLGEMNA QLWETTL+P  RSLLRV+   A  A ++F RLMGDEVEPRR+FIQ N+
Sbjct: 791 SRYKGLGEMNAEQLWETTLDPSNRSLLRVEAEQADIAHEIFERLMGDEVEPRRDFIQTNA 850

Query: 797 LPS-ALDI 803
           L    LD+
Sbjct: 851 LSVANLDV 858


>gi|254522716|ref|ZP_05134771.1| DNA gyrase, B subunit [Stenotrophomonas sp. SKA14]
 gi|219720307|gb|EED38832.1| DNA gyrase, B subunit [Stenotrophomonas sp. SKA14]
          Length = 819

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/821 (50%), Positives = 536/821 (65%), Gaps = 20/821 (2%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD       N +YDA+SI  L+GL+AV+KRP MYIGD    +GLHHM++EV+DN+IDE+
Sbjct: 1   MSDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFN 110
           L G+AD + VT++ DGS +VSDNGRGIPT  H++        +SAAEV+MT LHAGGKF+
Sbjct: 61  LAGHADHVAVTIHTDGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFD 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L + + + G  Y+  F NG    PL          G
Sbjct: 121 DNSYKVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTPLAKL-ETTTKRG 179

Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS+  F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI
Sbjct: 180 TTVRFWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGI 238

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +L + K PL  + I + G  +NI +D+A++W D Y E + CFTNNIPQKDGGTHL
Sbjct: 239 RSFVEHLAQLKTPLHPNVISVTGEHNNIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHL 298

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVS
Sbjct: 299 AGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVS 358

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           S+VR  VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA 
Sbjct: 359 SDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAG 418

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML
Sbjct: 419 LPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRML 478

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SS ++GTLITALGTGIG+D ++ +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI
Sbjct: 479 SSDQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELI 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI  PPLY I +GK   Y+KD+ +L+ YL + ++     +    +  I    L  
Sbjct: 539 ERGYVYIGLPPLYKIKQGKQELYLKDDPALDSYLASSAVENAALVPAAGEPGIEGLALEK 598

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL-ASKLANRLNFIAEK 648
            +         I+     +D+  +E  V     + +S +          LA RLN  +  
Sbjct: 599 LLLAYAAALDSIERNAHRYDRNLLEALVDFVPMDMDSLRSAGEGEGLDALAKRLNQGSLG 658

Query: 649 S-----EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
           S     E         + +LV R   G Q   VL  S+  S   +     S  +      
Sbjct: 659 SPRFSLELQEANDERPAAVLVTRRHMGEQHIQVLPMSAFESGELRAIHQASKLLHGLIRE 718

Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
             ++      I++       + +    ++G  +QR+KGLGEMN  QLW+TT+NP+TR LL
Sbjct: 719 GATISRGAKSIEVDSFAKAQNWLLEEAKRGRQIQRFKGLGEMNPEQLWDTTVNPETRRLL 778

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +V+I DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 QVRIEDAVAADQIFSTLMGDVVEPRRDFIEDNALKVANLDI 819


>gi|288959569|ref|YP_003449910.1| DNA gyrase subunit B [Azospirillum sp. B510]
 gi|288911877|dbj|BAI73366.1| DNA gyrase subunit B [Azospirillum sp. B510]
          Length = 827

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/817 (53%), Positives = 567/817 (69%), Gaps = 20/817 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q + Y A+SI +L+GLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L GY D 
Sbjct: 14  EPQQADYGAESITVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + V LN DGS TV DNGRGIPTD+H EEG+SAAEV+MT+LHAGGKFNQ SYKVSGGLHGV
Sbjct: 74  VEVVLNADGSVTVRDNGRGIPTDIHPEEGVSAAEVVMTQLHAGGKFNQNSYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-------TGTEVTFL 176
           GVSVVNALS  L LRI R G  + M F +G  + PL   G A          +GTEVTF+
Sbjct: 134 GVSVVNALSETLDLRIWRGGRTWSMRFRHGNAEAPLADVGEAPMVPEKGKPLSGTEVTFM 193

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  +F++ TL+HRLREL+FLNS V++ L D R  EP+   + Y+GG+EAFVS+L
Sbjct: 194 PSAETFTNIEFDFATLEHRLRELAFLNSGVRLLLTDARGVEPKVQDLHYEGGLEAFVSWL 253

Query: 237 DRHKKPLMQSPIRIQGSRDN-----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           DR K  L +  I ++  R       ++++ A++WND YHE  LCFTNNIPQKDGGTHL+G
Sbjct: 254 DRSKTALHKPAITLKSERPTEHGGVVTVECALQWNDSYHETTLCFTNNIPQKDGGTHLAG 313

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR I +Y  +S  +KK+K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSE
Sbjct: 314 FRAALTRAINNYAAESGIAKKEKVNLSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSE 373

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR VVE+ V + L+ + EEHP +A+ +V+KV++A+  R+AAR+AR++T RK  L ++SLP
Sbjct: 374 VRPVVEAVVGEALAQYFEEHPADARRVVQKVVEAAAAREAARKAREMT-RKSSLSMSSLP 432

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SELF+VEGDSAGGSAKQGRSR++QAILPLRGKILNVERAR DKMLSS
Sbjct: 433 GKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQSQAILPLRGKILNVERARLDKMLSS 492

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            EIGTLI ALGTGI  D F+  K RYHKIIIMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 493 AEIGTLIAALGTGI-SDEFNAEKARYHKIIIMTDADVDGSHIRTLLLTFFFRQMPDLIER 551

Query: 532 GFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           G+LYI +PPLY I RG    +Y+KD+ +LE+YL+  +L +      D   ++    L + 
Sbjct: 552 GYLYIAQPPLYRIKRGNAKERYLKDDRALEEYLVEAALGDLSVRLSD-GTLLIGEQLSSL 610

Query: 591 IDDALKIDKLIKDFYPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           ++ A      I        +   +EQA ++G  +     +   + A+  A      A  +
Sbjct: 611 VEQARTARPAIDTLSRKVGNAMVVEQAAVAGTLSAALADDKAAAEAAAQAVAERMNALDA 670

Query: 650 EKSWHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL-SL 707
           +  W G  +      V R  RGV  + + +   + S  ++     +  ++  + T   + 
Sbjct: 671 DGGWRGEALPQGGYAVIRARRGVTHRHLFDTDLLKSGEARRLDGLAADLKRVFGTAGQAF 730

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
               +   +TGP +L D +  +GR+G+++QRYKGLGEMN  QLWETTL+P  RSLL+V++
Sbjct: 731 EKQKETRALTGPVALFDVVMELGRRGVTIQRYKGLGEMNPDQLWETTLDPSKRSLLQVRV 790

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             A QA+++FS LMGD VEPRREFIQ+N+L    LD+
Sbjct: 791 NHADQAEEVFSTLMGDVVEPRREFIQDNALKVSNLDV 827


>gi|296112234|ref|YP_003626172.1| DNA gyrase subunit B [Moraxella catarrhalis RH4]
 gi|295919928|gb|ADG60279.1| DNA gyrase subunit B [Moraxella catarrhalis RH4]
          Length = 819

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/821 (48%), Positives = 534/821 (65%), Gaps = 22/821 (2%)

Query: 1   MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M+DN  N          Y A ++++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+  
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I R+G  +  ++ +G+ D PL         TGT+
Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILNIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS +IF     F+YD L  RLRELSFLNS V+I L D+R+   +     +KGG+  
Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVSY++  K  L           D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG
Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR +  Y++    +KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE
Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+SVVE+ +++ LS +L E+P  AK+I  K++DA+  RDAAR+AR++TRRK  LDIA LP
Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI  
Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY + RGK   Y+KD E+L+ YL++ ++ +           ++   L   +
Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649
            D  +   +       +    ++   +    +     D++     A  L N+LN +  K 
Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPKLDVSGIGDKQAVDEWALALENQLNDLEPKL 657

Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           +                +    V      +  Q++L+ + + S         S       
Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
                L        I     L   +    R+G+ +QRYKGLGEMN  QLWETT++P+ R 
Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D
Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818


>gi|93004837|ref|YP_579274.1| DNA gyrase, B subunit [Psychrobacter cryohalolentis K5]
 gi|92392515|gb|ABE73790.1| DNA gyrase subunit B [Psychrobacter cryohalolentis K5]
          Length = 871

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/843 (46%), Positives = 532/843 (63%), Gaps = 50/843 (5%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y +  I++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + 
Sbjct: 32  SDYSSKDIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDII 91

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +V DNGRG+P D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 92  IHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 151

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  L++ I REG  Y  ++ +G+ D  +     A + TGT++ F PS+D+F+   F
Sbjct: 152 VNALSKKLEMNIWREGYHYHQTYTDGVPDGDIQQ-MEATDQTGTQIRFYPSNDVFTGTIF 210

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FVSY++  K  +    
Sbjct: 211 EYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINDVF 268

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             I    D IS+++A++W D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + +Y+++ 
Sbjct: 269 HFISNQDDGISVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRE 328

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +
Sbjct: 329 NLFKKEKVAATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDY 388

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L+E+P   K+I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL
Sbjct: 389 LQENPSAGKLIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSEL 448

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSSQE+G LITALG GIG 
Sbjct: 449 YIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGP 508

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G
Sbjct: 509 DEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKG 568

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           +   Y+KD+E+L+ YL++ ++             I+   L   ++D  +   +       
Sbjct: 569 RQELYLKDDEALKAYLLSSTIDNTRLHISADAPAITGQALETLLNDYNQTQLIKARLQIR 628

Query: 608 HDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNF--------------------- 644
           +    ++    +   + +   D++   +    L  +L                       
Sbjct: 629 YPAVLLDALTHTPKLSTDITYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKN 688

Query: 645 ------------------IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
                              ++ S+     +       +      +   ++L+ S I S  
Sbjct: 689 MDAAAADLLGMRPVVAVEESDSSDTEAVVAKAQWLPRITVYVHQLAHHYLLDASFINSGE 748

Query: 687 SKYKRIFSNRIEENYLTILSLICNG-----DKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                  S            +  +        I I     L   +    R+G+++QRYKG
Sbjct: 749 YTKLLRLSAEWNTLLDEDAFIRRDATAGTTKDIPIRDFDYLWQQMMLDARRGLAIQRYKG 808

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800
           LGEMNA QLW+TT++P+ R +LRV I DA  AD +F+ LMGD VEPRR FI+EN+L    
Sbjct: 809 LGEMNADQLWDTTMDPENRRMLRVNIEDAIAADHMFTCLMGDHVEPRRIFIEENALTVSN 868

Query: 801 LDI 803
           LDI
Sbjct: 869 LDI 871


>gi|39995114|ref|NP_951065.1| DNA gyrase subunit B [Geobacter sulfurreducens PCA]
 gi|39981876|gb|AAR33338.1| DNA gyrase, B subunit [Geobacter sulfurreducens PCA]
 gi|298504144|gb|ADI82867.1| DNA gyrase, B subunit [Geobacter sulfurreducens KN400]
          Length = 795

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/807 (47%), Positives = 535/807 (66%), Gaps = 16/807 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D  QN  Y AD I++L+GL+AV+KRP+MYIG T  + GLHH++YE++DN+IDE+L GY
Sbjct: 1   MTDE-QNYDYGADKIKVLEGLEAVRKRPAMYIGSTAAQ-GLHHLVYEIVDNSIDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + + VT+++DGS TV DNGRGIPTD+H  EG  AAEV +T LHAGGKF+  SYKVSGGL
Sbjct: 59  CNEVNVTIHLDGSLTVVDNGRGIPTDIHPTEGKPAAEVALTVLHAGGKFDNTSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G +Y  S+  G    PL V G      GT++TFLP   
Sbjct: 119 HGVGVSVVNALSRKLELEIRRDGKVYRQSYACGDPQTPLEVMGETK-KRGTKITFLPDDT 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F++D L  RLREL+FLN+ V+I++ D+R  E +     Y+GGI +FV YL+R++
Sbjct: 178 IFETTEFSFDVLSQRLRELAFLNAGVRITITDER-EEGKHHDFHYEGGIVSFVEYLNRNR 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L   PI  +G +  + +++A+++ND Y E V  F NNI   +GGTHL G R+ALTR +
Sbjct: 237 TALHPKPIYFKGEKAGVEMEVALQYNDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTM 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y   +   KK+K ++ G+D REG T+V+S+K+P P+F  QTK KL +SEV+  VES +
Sbjct: 297 NTYAAANELLKKEKVAISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ +LEE+P  AK I+ K ++A+  R+AAR+AR+LTRRKG LDI++LPGKLADC ER
Sbjct: 357 NEKLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQER 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQEIGTLITA
Sbjct: 417 DPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D FDI KLRYH+II+MTDADVDG+HI TLLLTFFFRQMP ++  G LYI +PP
Sbjct: 477 LGTGIGKDDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RG+   Y+++E +++ YL+ +   + +      +   S   +   +   ++   +
Sbjct: 537 LYKVKRGRKELYLRNEAAMQAYLLEEGTEDMLLFLESGEKTYSGKQIIPILKQLVEYRTI 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           +           I + +I           I      +L   L  I+   +      +++ 
Sbjct: 597 LDKVVRKG----INEELIRVFLRLGVKGGIED--MEQLVPFLTNISRVYDGGDFSPLDDG 650

Query: 661 DILVKR-IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            ++V+    R   +Q  L+   I S+          ++ + +    +++ +  K      
Sbjct: 651 RVIVRLGNLRIALDQHTLD--LIGSYEYGLLVESYRKVRDIFGDGRAVVSSEGKELFATT 708

Query: 720 --CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
               LL       +KG+S+QRYKGLGEMN  QLWETT+ P  R+LL+VKI DA +AD +F
Sbjct: 709 IGLDLLSFFMDSAKKGLSIQRYKGLGEMNPEQLWETTMEPVNRTLLQVKIEDAIEADTIF 768

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMGD+VEPRR+FI++N+L    LDI
Sbjct: 769 TILMGDQVEPRRDFIEQNALNVSNLDI 795


>gi|315497055|ref|YP_004085859.1| DNA gyrase, b subunit [Asticcacaulis excentricus CB 48]
 gi|315415067|gb|ADU11708.1| DNA gyrase, B subunit [Asticcacaulis excentricus CB 48]
          Length = 815

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/822 (55%), Positives = 575/822 (69%), Gaps = 28/822 (3%)

Query: 1   MSDNIQ-----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++N +      ++Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE
Sbjct: 1   MAENEEHPEVVENAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  + V LN DGSC+VSD+GRG+P D+H EEG+SAAEVIMT+LHAGGKF+Q SYK
Sbjct: 61  ALAGHATRVEVILNADGSCSVSDDGRGMPVDIHAEEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDT 169
           VSGGLHGVGVSVVNALS +++L+I R G  +E  F  G     + VTG A         T
Sbjct: 121 VSGGLHGVGVSVVNALSDYVELKIFRNGKTHEARFELGETVRSVEVTGDAPLRENGNPLT 180

Query: 170 GTEVTF------LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           GT VTF       P    F+  DF+  TL+HRLREL+FLNS V I   D R  EP +I +
Sbjct: 181 GTIVTFLPSLKTGPDQGTFTFIDFDRKTLEHRLRELAFLNSGVHIRFADLREAEPYDIIL 240

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI  FV +LD+ K P+++ PI  +G RD + +DLA++WND YHE +LCFTNNIPQ+
Sbjct: 241 HYEGGIVEFVKHLDKSKSPIIKEPIDARGLRDKVEVDLALQWNDSYHETMLCFTNNIPQR 300

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+  R ALTR +++Y+E S  +KK+K SV G+D REG T VLS+K+PDP+FSSQT
Sbjct: 301 DGGTHLAAFRGALTRVMSAYMESSGLAKKEKVSVSGEDAREGLTCVLSVKVPDPKFSSQT 360

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR  VE  V + LS W EE+P+EAK IV K+++A+  R+AAR+AR+LTRRK 
Sbjct: 361 KDKLVSSEVRPAVEGIVFEKLSQWFEENPVEAKQIVSKIIEAAAAREAARKARELTRRKS 420

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LDI SLPGKLADC ERDP KSELF+VEGDSAGGSAKQGR+RENQAILPLRGKILNVERA
Sbjct: 421 ALDINSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNRENQAILPLRGKILNVERA 480

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           RFDKMLSS+ IGTLITALGTGIG+D F+I KLRYHKIIIMTDADVDGAHIRTLLLTFF+R
Sbjct: 481 RFDKMLSSEMIGTLITALGTGIGRDDFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYR 540

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           QMP +I NG+LYI +PPLY + +GKS +Y+KD   ++ +LI +  SE +     S   I+
Sbjct: 541 QMPQIIENGYLYIAQPPLYKVAKGKSSRYLKDNTEMDAFLIEEGTSEAVLELR-SGERIT 599

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
             DL   +  A      +           IEQA + G+F  + D        + +A RL+
Sbjct: 600 AQDLEAQVRIAKTFKGSVDRLASRAPAFAIEQAALGGLFGDKPD-------LALVAKRLD 652

Query: 644 FIAEKSEKSWHGSINN---SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
            + E  +  W    N       +  R+ RGV E+ VL+   I S  ++     +  + + 
Sbjct: 653 RLKEDGDGDWSVEANTTSHGGYVFTRVRRGVSEKIVLDDGLIHSQDARRLNERTLELGDL 712

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  + +         I GP  L+  +   GRKG+S+QRYKGLGEMN  QLWETTL+ D R
Sbjct: 713 FNEVSTFRRKDKAADIRGPLDLVAAVLDAGRKGLSIQRYKGLGEMNPDQLWETTLDKDAR 772

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +LL+VK+    +ADDLF +LMGD VEPRREFIQ+N+L + +D
Sbjct: 773 TLLQVKVNLTDEADDLFVKLMGDLVEPRREFIQDNALDAEVD 814


>gi|319778798|ref|YP_004129711.1| DNA gyrase subunit B [Taylorella equigenitalis MCE9]
 gi|317108822|gb|ADU91568.1| DNA gyrase subunit B [Taylorella equigenitalis MCE9]
          Length = 813

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/820 (47%), Positives = 543/820 (66%), Gaps = 24/820 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D+ Q  SYDA SI++LKGL+AV+KRP MYIGDT   +GLHHM++EV+DN+IDE+L GY
Sbjct: 1   MTDSNQKPSYDASSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNSIDEALAGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
            D I VT++ D S +V+DNGRGIP ++HK  E G SAAE++MT LHAGGKF+Q SYKVSG
Sbjct: 61  CDDIVVTIHSDNSISVADNGRGIPVEVHKDDEYGRSAAEIVMTELHAGGKFDQNSYKVSG 120

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS WL+L I+R+G ++EMSF  G+   PL V G   +  GT+V +L  
Sbjct: 121 GLHGVGVSCVNALSEWLRLTIRRDGQVHEMSFNRGVKVEPLKVVGHT-DKRGTKVHYLAD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++IF   D++Y+    RLRELSFLN+ V+I L+D+   +       + GG+  FVSY+++
Sbjct: 180 TEIFGTIDYSYEVFSKRLRELSFLNNGVKIRLVDELHEKE--ENFEFSGGVTGFVSYINK 237

Query: 239 HKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            K+ +  +   +  S       + +D+AM+W D  +E VLC+TNNIPQ DGGTHL+GLR+
Sbjct: 238 SKQVIHPNIFHVSKSSSAGGVEVEVDVAMQWTDSINEQVLCYTNNIPQSDGGTHLTGLRA 297

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR    Y+E +  +KK K  ++G+D REG + VLS+K+P+P+FSSQTK+KLVSSEVR+
Sbjct: 298 AITRVFNKYIESTDLAKKAKVELVGEDMREGLSCVLSVKLPEPKFSSQTKDKLVSSEVRA 357

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  V +GL  WL E+P +A+ I  K+++A+  R+A+R+AR+LT+RKG+L+ A LPGKL
Sbjct: 358 PVEEVVAEGLETWLLENPNDARDICVKIIEAARAREASRKARELTKRKGILEGAGLPGKL 417

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP K EL++VEGDSAGGSAKQGR+R+ QAILPLRGK+LNVE++R D++ +S  I
Sbjct: 418 ADCQEKDPAKCELYIVEGDSAGGSAKQGRNRKFQAILPLRGKVLNVEKSRADRIFASDAI 477

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            TLITALGT I +D F++ KLRYH+IIIMTDADVDGAHIRTLLLT F+RQMP L+  G +
Sbjct: 478 KTLITALGTSIDKD-FNLEKLRYHRIIIMTDADVDGAHIRTLLLTLFYRQMPKLVEEGHV 536

Query: 535 YIIKPPLYGITRGKS--LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI +PPLY +    S   +Y+KD+    +++   +L +      D   +I  ++L++++ 
Sbjct: 537 YIAQPPLYKVRIKGSKVERYLKDDAEETEFMQELALKDAGIDLGD--RIIEGDELKSYLS 594

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL----NFIAEK 648
             +  DK+I+      D++ + QA+  G       ++     A+KL + L       A +
Sbjct: 595 TYMSADKVIRRLSRIMDESTL-QAISHGFVLKLDTEQNAQESATKLKDVLFDPSKPKAVE 653

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
               +   +N+  ++V R+  G ++  +     I S   K                  + 
Sbjct: 654 ITPQYDAELNSHYLVVDRLIHGNKDTSIFNRDFIASNDYKILLNAGESFRGLIKDGAKVF 713

Query: 709 CNGD----KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
                   +  ++    ++D +F    K +  QRYKGLGEMN  QLWETT++P  R LL+
Sbjct: 714 RGEATKRMEYAVSDFKQVVDWLFEQASKSVDKQRYKGLGEMNPDQLWETTMDPSVRRLLQ 773

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           V+I DA  AD +F  LMGD VEPRREFI+EN+L    LDI
Sbjct: 774 VQIEDAIAADQIFDMLMGDRVEPRREFIEENALTVSDLDI 813


>gi|190572096|ref|YP_001969941.1| DNA gyrase subunit B [Stenotrophomonas maltophilia K279a]
 gi|190010018|emb|CAQ43623.1| putative DNA gyrase subunit B [Stenotrophomonas maltophilia K279a]
          Length = 819

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/821 (49%), Positives = 534/821 (65%), Gaps = 20/821 (2%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD       N +YDA+SI  L+GL+AV+KRP MYIGD    +GLHHM++EV+DN+IDE+
Sbjct: 1   MSDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFN 110
           L G+AD + VT++ DGS +VSDNGRGIPT  H++        +SAAEV+MT LHAGGKF+
Sbjct: 61  LAGHADHVAVTIHADGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFD 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L + + + G  Y+  F NG     L          G
Sbjct: 121 DNSYKVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRG 179

Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS+  F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI
Sbjct: 180 TTVRFWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGI 238

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL
Sbjct: 239 RSFVEHLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHL 298

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVS
Sbjct: 299 AGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVS 358

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           S+VR  VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA 
Sbjct: 359 SDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAG 418

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML
Sbjct: 419 LPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRML 478

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SS ++GTLITALGTGIG+D ++ +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI
Sbjct: 479 SSDQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELI 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI  PPLY I +GK   Y+KD+ +L+ YL + ++     +    +  I    L  
Sbjct: 539 ERGYVYIGLPPLYKIKQGKQELYLKDDPALDSYLASSAVENAALVPATGEPGIEGLALEK 598

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL-ASKLANRLNFIAEK 648
            +         I+     +D+  +E  V     + ES +          LA RLN  +  
Sbjct: 599 LLLAYAAALDSIERNAHRYDRNLLEALVDFVPMDLESLRAAGEGEGLDALAKRLNQGSLG 658

Query: 649 S-----EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
           S     E         + +LV R   G Q   VL  S+  S   +     S  +      
Sbjct: 659 SPRFTLELQEANDERPAAVLVTRRHMGEQHIQVLPMSAFESGELRAIHQASKLLHGLVRE 718

Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
             ++      I++       + +    ++G  +QR+KGLGEMN  QLW+TT+NP+TR LL
Sbjct: 719 GATISRGAKSIEVDSFAKAQNWLLEEAKRGRQIQRFKGLGEMNPEQLWDTTVNPETRRLL 778

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +V+I DA  AD +FS LMGD VEPRR+FI++N+L    LDI
Sbjct: 779 QVRIEDAVAADQIFSTLMGDVVEPRRDFIEDNALKVANLDI 819


>gi|163854307|ref|YP_001628605.1| DNA gyrase subunit B [Bordetella petrii DSM 12804]
 gi|163258035|emb|CAP40334.1| DNA gyrase subunit B [Bordetella petrii]
          Length = 817

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/820 (47%), Positives = 522/820 (63%), Gaps = 22/820 (2%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD    N +NS Y ADSI++LKGL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+
Sbjct: 1   MSDQQNSNPENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114
           L GY D I VT++ D S +VSDNGRGIPT +HK  E G SAAE++MT LHAGGKF+Q SY
Sbjct: 61  LAGYCDDIVVTIHTDNSISVSDNGRGIPTAIHKDDEFGRSAAEIVMTELHAGGKFDQNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVS VNALS WL+L I+R G +++M F  G    PL VTG   +  GTEV 
Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGEVHQMEFRQGERVAPLAVTG-TTDKRGTEVR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL    IF+  +++YD L  RLRELSFLN+ V+I LID+R  +       + GG+  FV 
Sbjct: 180 FLADPIIFNNIEYHYDVLSKRLRELSFLNNGVKIRLIDQRQGKE--ENFAFSGGVRGFVE 237

Query: 235 YLDRHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           Y++R K  L  +   +    +     + +++AM+WND Y E VLCFTNNIPQ+DGGTH++
Sbjct: 238 YINRSKTVLHPNVFAVSAESNAGGVPVGVEVAMQWNDTYSETVLCFTNNIPQRDGGTHMT 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR I  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 298 GLRAAMTRVINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  V   L  WL EHP +AK +  K+++A+  R+AAR+AR++TRRK VL+ A L
Sbjct: 358 EVRPAVEEAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++
Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TLITALGT IG   F+I+KLRYH++IIMTDADVDGAHIRTLLLT  +RQMP LI 
Sbjct: 478 SEQIATLITALGTSIG-PDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELIE 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI +PPLY +  G+  +Y+KD++    +++  +L +   +       I+   L   
Sbjct: 537 RGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQLALKDAELVPAQGAAPITGEALAEL 596

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC---ESDQEINVSLASKLANRLNFIAE 647
               +  D +I       D   +         +    E+       L+  +   +     
Sbjct: 597 ARQYVLADAVIARLTRLFDVDALSAMAEGVEIDLSSGEAAAASAQRLSDAMHEAVAGNGV 656

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
           +    +  +     +LV+R+  G     V++   +           +            +
Sbjct: 657 EVVAEFDETHEQHRLLVRRMHHGNVRVSVIDADFVQGADYAVLAKSARTFLGLIGAGAFV 716

Query: 708 ICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
                    +  +      +  + S   +GIS QRYKGLGEMN  QLWETT++P  R LL
Sbjct: 717 ARGEGDKRKEQFVADFREAMQWLRSEAERGISKQRYKGLGEMNPEQLWETTMDPTVRRLL 776

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           RVKI DA  AD++F+ LMGD+VEPRR FI+ ++L +  +D
Sbjct: 777 RVKIEDAIAADEIFTTLMGDDVEPRRAFIETHALSASNID 816


>gi|85375173|ref|YP_459235.1| type IIA topoisomeraseb subunit [Erythrobacter litoralis HTCC2594]
 gi|84788256|gb|ABC64438.1| type IIA topoisomeraseB subunit [Erythrobacter litoralis HTCC2594]
          Length = 847

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/838 (51%), Positives = 565/838 (67%), Gaps = 48/838 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           QN  Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+L G+ D++ 
Sbjct: 18  QNGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDLVL 77

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKVSGGLH 121
           + LN DGS +V DNGRGIP D+HKEEG+SAAEVIMT+LHAGGKF    +  +YKVSGGLH
Sbjct: 78  IELNPDGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLH 137

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG----------NDTGT 171
           GVGVSVVNALS WL+L I R+G  + M F +G     L VTG A              GT
Sbjct: 138 GVGVSVVNALSEWLELVIWRDGKEHYMRFEHGEAVKSLEVTGDAPRVDQNPDDNGFKKGT 197

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            VTF+ S D F    DF+++ L+HR REL+FLNS V+I L DKR  + RE  MFY+GGI 
Sbjct: 198 RVTFMASHDTFKNVTDFDFEKLEHRYRELAFLNSGVRILLRDKRHEDVREHDMFYEGGIA 257

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR+K+PL+  PI +   +D I ID+A++WND Y+ENVL FTNNIPQ+DGGTHL+
Sbjct: 258 AFVKYLDRNKQPLVAEPISVSAEKDGIGIDVALQWNDSYYENVLTFTNNIPQRDGGTHLA 317

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
             RSALTR + +Y   S   KK+K S+ G+D REG T+++S+K+PDP+F SQTK+KLVSS
Sbjct: 318 AFRSALTRTLNNYATASGLLKKEKVSLSGEDMREGLTAIVSVKLPDPKFGSQTKDKLVSS 377

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  +ES + + +  WLEE+P +AK IV+K++DA      A R      RKG + +ASL
Sbjct: 378 EVRQPLESLMGEKMGEWLEENPNDAKAIVQKIIDA-AAAREAARKAREMSRKGAMSVASL 436

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP KSELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+++S
Sbjct: 437 PGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDRIIS 496

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S+E+GTLI A+GTG+ +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF RQMP ++ 
Sbjct: 497 SKEVGTLIQAMGTGL-RDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMPEIVK 555

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G L+I +PPLY +++G+S  Y+KD+  L+ YLI+  L   +          S  +L+  
Sbjct: 556 AGHLFIAQPPLYKVSKGRSEVYLKDDRELDRYLISGGLQGRVLD--SGGTQRSGAELQTL 613

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           +D AL++  LI      ++   IE   ++GVF+  +    +     + A RL     ++E
Sbjct: 614 VDHALRVRNLIGFAPRKYNAAIIEAMALAGVFDPANR--ASAEALERAAERLQLGDPEAE 671

Query: 651 KSWHG-SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
             W     ++  +  +R+ RGV +  ++E   + S  ++     +    E+Y     L  
Sbjct: 672 --WSARRTDDGGVAFERVWRGVTDAHLIEPKFLESAEARKLHSVAAEEAESYEVAARLKK 729

Query: 710 --NGDKI---------------------KITGPCSLLDTIFSIGRKGISMQRYKGLGEMN 746
             +G+                        IT P  LLD + + GRKG+S+ RYKGLGEMN
Sbjct: 730 LSSGETTAPDPESADETDADTPSFTDDDAITRPTELLDAVLAAGRKGLSIARYKGLGEMN 789

Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A QLWETTL+P+ R LL+VK+ DA   D++F+RLMGD VEPRREFIQ+N+L    LD+
Sbjct: 790 AEQLWETTLDPEARILLQVKVEDADVTDEIFTRLMGDVVEPRREFIQDNALNVANLDV 847


>gi|17548157|ref|NP_521559.1| DNA gyrase subunit B [Ralstonia solanacearum GMI1000]
 gi|17430464|emb|CAD16937.1| probable dna gyrase (subunit b) protein [Ralstonia solanacearum
           GMI1000]
          Length = 842

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/846 (46%), Positives = 531/846 (62%), Gaps = 47/846 (5%)

Query: 1   MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           M++  +       +SSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+I
Sbjct: 1   MTEQQKPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKF 109
           DE+L G+   I VT++ D S +V DNGRGIPT +      E   SAAE++MT LHAGGKF
Sbjct: 61  DEALAGHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKF 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------- 155
           +Q SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F  GI               
Sbjct: 121 DQNSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGK 180

Query: 156 ---DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
               +PL V+G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D
Sbjct: 181 TVEVSPLRVSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTD 239

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R+ +       + GG++ FV Y++++K  L  +     G +D + ++++M+WNDG++E 
Sbjct: 240 QRTGKE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQ 297

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+
Sbjct: 298 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSV 357

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AA
Sbjct: 358 KVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAREAA 417

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKGVLD   LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILP
Sbjct: 418 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 477

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+H
Sbjct: 478 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 537

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTLLLTFF+RQMP +I  G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   I
Sbjct: 538 IRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAI 597

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
            +  D    I+ + L            +I+      D   +         +  S+     
Sbjct: 598 LVRADGTE-IASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSEAGAEA 656

Query: 633 SLASKLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSI 682
           S  +  A  L      S  +          +        ++V R   G Q    ++   +
Sbjct: 657 SAKALKARLLEMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFV 716

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQR 738
                      +   +        +         +  +T   + +  +     +GIS QR
Sbjct: 717 AGADYATLSQTAQTFQGLIGEGAKVRRGTGDKQREQGVTDFHAAITWLLGEAERGISRQR 776

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN SQLWETT++   R LL+V+I DA  AD +F+ LMGD+VEPRR FI+ N+L 
Sbjct: 777 YKGLGEMNPSQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALV 836

Query: 799 S-ALDI 803
           +  +D+
Sbjct: 837 ARNIDV 842


>gi|254251050|ref|ZP_04944368.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
 gi|124893659|gb|EAY67539.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
          Length = 834

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/830 (44%), Positives = 504/830 (60%), Gaps = 32/830 (3%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+       NSSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+
Sbjct: 10  MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 69

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112
           L GY + I VT++ D S +V DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q 
Sbjct: 70  LAGYCNDIHVTIHADNSISVVDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 129

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160
           SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ 
Sbjct: 130 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQNRILETVDGEEVSPMQ 189

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           + G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +   
Sbjct: 190 IIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 246

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               + GG++ FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNI
Sbjct: 247 DDFAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNNI 306

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP--DPR 338
           PQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P  + +
Sbjct: 307 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPGAEVQ 366

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
            + Q        +        V   L  +L E           +      RDAARR    
Sbjct: 367 LADQRTSSCR-PKCARRSRKVVAKALEEFLLETRTTRGSSAGTLWWIPRARDAARRRARS 425

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            RRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+L
Sbjct: 426 LRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVL 485

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NVE+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLL
Sbjct: 486 NVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLL 545

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TFF+RQMP ++  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++
Sbjct: 546 TFFYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSEN 605

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
              IS + L       L    +I      +D   +E  +     +  S +    + A  L
Sbjct: 606 AAAISGDALGELARSYLLSQSVIDRLSRLYDPAALEAIMDGVAIDL-SSEASTEASAKAL 664

Query: 639 ANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
              L+  A K+E      +        + V+R   G     V++     +   +     +
Sbjct: 665 HAALHDDALKNEVRVVPSYDAVREQRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTA 724

Query: 695 NRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETT 754
           N  +        +      + +    S +  + +   + +S QRYKGLGEMN  QLWETT
Sbjct: 725 NTFKGLIGEGAVIKRGERSMAVKDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETT 784

Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ++P+ R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 785 MDPNVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 834


>gi|34101314|gb|AAQ57683.1| DNA gyrase subunit B [Chromobacterium violaceum ATCC 12472]
          Length = 771

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/775 (49%), Positives = 516/775 (66%), Gaps = 5/775 (0%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDT   +GLHHM++EVLDNAIDE+L G+AD I VT+N D S +V DNGRGIPTD+H 
Sbjct: 1   MYIGDTQDGTGLHHMVFEVLDNAIDEALAGHADTIKVTINPDNSVSVEDNGRGIPTDIHP 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG SAAEVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS WLKL+I R+G ++EM 
Sbjct: 61  EEGRSAAEVIMTILHAGGKFDSNSYKISGGLHGVGVSVVNALSDWLKLKIWRDGKVHEME 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F  G    PL VTG   +  GTEVTF  S + F   ++++D L  R+RELSFLN  V I 
Sbjct: 121 FRRGDAVAPLTVTGHTSH-RGTEVTFFASVETFGHIEYHFDILAKRIRELSFLNQGVGIQ 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           LIDKRS +       + GG+  FV Y++R+K  L        G +D +S+++AM+WND Y
Sbjct: 180 LIDKRSGKE--ENFAFSGGVAGFVEYMNRNKTVLHPKVFYGIGEKDGMSVEVAMQWNDSY 237

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E+V CFTNNIPQ+DGGTH++ LR  +TR +  ++E+S  +KK K    GDD REG T V
Sbjct: 238 QESVQCFTNNIPQRDGGTHMTALRQVMTRTLNQFIEESEAAKKAKVDTTGDDMREGLTCV 297

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           LS+K+PDP+FSSQTK+KLVSSE+  VV   +++ L  +L E+P +AKII  K+++A+  R
Sbjct: 298 LSVKLPDPKFSSQTKDKLVSSEIGPVVNEVISEALKTYLLENPNDAKIICGKIVEAARAR 357

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           +AAR+AR++TRRKGV+D   LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR R+ QA
Sbjct: 358 EAARKAREITRRKGVMDGLGLPGKLADCQEKDPSLCELYLVEGDSAGGSAKQGRDRKFQA 417

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVERARFDKML SQE+ TLITA+G GIG+D ++ +KLRYH+IIIMTDADVD
Sbjct: 418 ILPLKGKILNVERARFDKMLQSQEVATLITAMGCGIGKDEYNPDKLRYHRIIIMTDADVD 477

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           GAHIRTLLLTFF+RQM  L+  G +YI +PPLY    GK  +Y+KD+  L  YL+  +L 
Sbjct: 478 GAHIRTLLLTFFYRQMTELVERGHIYIAQPPLYKAKHGKQERYLKDDGELNQYLLQLALE 537

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
           +   +  + +  +S   L       L    +++      D   +E  + +G  + ES Q+
Sbjct: 538 KAELIPAEGEAPLSGETLGEIARQFLLARAVMERESRVIDPLVLEAMLKTGPLSLESQQQ 597

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKY 689
            + ++A  L   L+    + +       +   + + R   G     VL+ + + S     
Sbjct: 598 ADATVAE-LNKHLSADTIELQLLRDEKNDGHLVKIIRKLHGNVLVTVLDQNFLDSGDYAE 656

Query: 690 KRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749
            +   + +         +        +      LD + +  +KG+++QRYKGLGEMN  Q
Sbjct: 657 LKKTGSLLGGLLRQGAHVKRGETVKPVAEFGEALDWLLAEVKKGMNIQRYKGLGEMNPEQ 716

Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LWETT++P  R LL+V+I D   ADD+F+ LMGDEVEPRR+FI+ N+L +  +D+
Sbjct: 717 LWETTMDPTVRRLLKVRIEDVMGADDVFTTLMGDEVEPRRQFIEGNALIARNIDV 771


>gi|300689717|ref|YP_003750712.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
           solanacearum PSI07]
 gi|299076777|emb|CBJ49384.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
           solanacearum PSI07]
          Length = 838

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/842 (46%), Positives = 532/842 (63%), Gaps = 43/842 (5%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++  +    +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTEQQKPQPENSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113
            G+   I VT++ D S +V+DNGRGIPT +      E   SAAE++MT LHAGGKF+Q S
Sbjct: 61  AGHCTEIHVTIHTDNSISVTDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------D 156
           YKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F  GI                   
Sbjct: 121 YKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEQAEAPDGKMVEV 180

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL V+G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+R+ 
Sbjct: 181 SPLRVSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRTG 239

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VLCF
Sbjct: 240 KE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVLCF 297

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+
Sbjct: 298 TNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPE 357

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR
Sbjct: 358 PKFSSQTKDKLVSSEVRLPVEEMVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAR 417

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGVLD   LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 418 EMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGK 477

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 478 ILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTL 537

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LLTFF+RQMP++I  G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   I +  
Sbjct: 538 LLTFFYRQMPAIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAILVRA 597

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           D    I+ + L            +I+      D   +         +  S+     S  +
Sbjct: 598 DGTE-IASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSEAGAEASAKA 656

Query: 637 KLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
             A  L      S  +          +        ++V R   G Q    ++   +    
Sbjct: 657 LKARLLEMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFVAGAD 716

Query: 687 SKYKRIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742
                  +   +        +         +  +T   + +  +     +GIS QRYKGL
Sbjct: 717 YATLSQTAQTFQGLIGEGAKVRRGTGDKQREQGVTDFHAAITWLLGEAERGISRQRYKGL 776

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801
           GEMN SQLWETT++   R LL+V+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +
Sbjct: 777 GEMNPSQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALVARNI 836

Query: 802 DI 803
           D+
Sbjct: 837 DV 838


>gi|299065057|emb|CBJ36218.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
           solanacearum CMR15]
          Length = 842

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/846 (45%), Positives = 533/846 (63%), Gaps = 47/846 (5%)

Query: 1   MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           M++  +       +SSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+I
Sbjct: 1   MTEQQKPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKF 109
           DE+L G+   I VT++ D S +V DNGRGIPT +      E   SAAE++MT LHAGGKF
Sbjct: 61  DEALAGHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKF 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------- 155
           +Q SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F  GI               
Sbjct: 121 DQNSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHNMEFARGIPQNRLLEQAEAPDGK 180

Query: 156 ---DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
               +PL ++G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D
Sbjct: 181 MVEVSPLRMSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTD 239

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R+ +       + GG++ FV Y++++K  L  +     G +D + ++++M+WNDG++E 
Sbjct: 240 QRTGKE--ENFAFSGGVKGFVEYINKNKSVLHPTIFYATGEKDGVGVEVSMQWNDGFNEQ 297

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+
Sbjct: 298 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSV 357

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+FSSQTK+KLVSSEVR  VE  V+  L+ +L E P +AKII  K+++A+  R+AA
Sbjct: 358 KVPEPKFSSQTKDKLVSSEVRLPVEEIVSKVLNDFLLETPNDAKIICGKIVEAARAREAA 417

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKGVLD   LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILP
Sbjct: 418 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 477

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+H
Sbjct: 478 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 537

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTLLLTFF+RQMP +I  G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   I
Sbjct: 538 IRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYLMRQALDTAI 597

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
            +  D    I+ + L            +I+      D   +         +  S+   + 
Sbjct: 598 LVRADGTE-IASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSEAAADA 656

Query: 633 SLASKLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSI 682
           S  +  A  L      S  +          +        ++V R   G Q    ++   +
Sbjct: 657 SAKALKARLLEMQGNASNANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFV 716

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQR 738
                      +   +        +         +  +T   + +  + +   +GIS QR
Sbjct: 717 AGADYATLSQTAQTFQGLIGEGAKVRRGTGDKQREQAVTDFHAAITWLLAEAERGISRQR 776

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++   R LL+V+I DA  AD +F+ LMGD+VEPRR FI+ N+L 
Sbjct: 777 YKGLGEMNPEQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIETNALV 836

Query: 799 S-ALDI 803
           +  +D+
Sbjct: 837 ARNIDV 842


>gi|332976000|gb|EGK12871.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Psychrobacter sp.
           1501(2011)]
          Length = 884

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/861 (45%), Positives = 535/861 (62%), Gaps = 63/861 (7%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
              Q   Y + +I++L+GL+AV+ RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D
Sbjct: 27  QQAQPEEYSSKNIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCD 86

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I + ++ D S +V DNGRGIP D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHG
Sbjct: 87  QIDIIIHEDESVSVMDNGRGIPVDVHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHG 146

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L++ I REG+ Y+ ++ +G+ D  + +     + TGT++ F PS ++F
Sbjct: 147 VGVSVVNALSKKLEMNIWREGHHYQQTYSDGVPDGDIQMLEET-DRTGTQIRFYPSPNVF 205

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   F+++ L  RLRELSFLNS V+I L D+R+ +       +KGG+  FV+Y++  K+ 
Sbjct: 206 TGTTFDFEILAKRLRELSFLNSGVRIVLTDERTDKQHV--FEHKGGLSEFVAYINSGKEG 263

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L      +    D I ++ A++W D Y+E VLCFTNNIPQKDGGTHLSG RSALTR + +
Sbjct: 264 LNDVFHFVSEQDDGIVVEAALQWTDTYNEKVLCFTNNIPQKDGGTHLSGFRSALTRCLNT 323

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y++     KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D
Sbjct: 324 YMDNENLMKKEKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHD 383

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             + +L E+P  AK I  K++DA+  RDAAR+AR+LTRRK  LDIA LPGKLADC E+DP
Sbjct: 384 KFNDYLLENPSAAKSIAGKIIDAARARDAARKARELTRRKTTLDIAGLPGKLADCQEKDP 443

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+GTLITALG
Sbjct: 444 ALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGTLITALG 503

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY
Sbjct: 504 CGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLY 563

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + +G+   Y+KD+E+L+ YL++ ++ E      +    I+   L + ++D  +   +  
Sbjct: 564 KVKKGRQELYLKDDEALKAYLLSSTIDEMNLHISEDAPAITGQALESLLNDYNQTQLVKS 623

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIA-------------- 646
                +    ++        + +   + +V      KL  +L                  
Sbjct: 624 RLQIRYPAVLLDALTHVPKLSTDMTYDYDVMSEWKDKLQAQLERFGSDLRPSIELDNIHA 683

Query: 647 -----------------------------EKSEKSWHGSINNSD---------ILVKRIA 668
                                           E +      +SD           +    
Sbjct: 684 PRTDELSEAAKDANNQFKFKLGAKVDSPNSDVEDAEVVEGADSDMLSTKPQWLPRITIYV 743

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-----DKIKITGPCSLL 723
             + + ++L+     S         S            +  +        I +     L 
Sbjct: 744 HNLAQHYLLDAGFFNSGEYARLMRLSKEWNTLLTDTAFVRRDTTTGTVKDILLRDFDHLW 803

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
             +    R+G+S+QRYKGLGEMNA QLW+TT++P+ R +L+V I DA  AD LF  LMGD
Sbjct: 804 QQVMQEARRGLSVQRYKGLGEMNADQLWDTTMDPENRRMLKVTIEDAIAADHLFMCLMGD 863

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +VEPRR+FI+EN+L    LDI
Sbjct: 864 DVEPRRQFIEENALTVTNLDI 884


>gi|254491239|ref|ZP_05104420.1| DNA gyrase, B subunit [Methylophaga thiooxidans DMS010]
 gi|224463752|gb|EEF80020.1| DNA gyrase, B subunit [Methylophaga thiooxydans DMS010]
          Length = 777

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/780 (50%), Positives = 521/780 (66%), Gaps = 9/780 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  +GLHHM++EVLDNAIDE+L G+   I V ++ D S +V DNGRGIP D+H+
Sbjct: 1   MYIGDTDDGTGLHHMVFEVLDNAIDEALAGHCSEIQVRIHPDDSVSVIDNGRGIPVDIHE 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L + I R G IY+ S
Sbjct: 61  EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLSMEIHRSGRIYKQS 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G+ D  L         TGT++ F PS + F+   ++Y  L  R+REL+FLNS V+I 
Sbjct: 121 YTHGVPDAALTDVDDTEI-TGTKIQFWPSEETFTNVTYDYKILAKRIRELAFLNSGVRIV 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+R  +    T +Y+GGI AFV +L+++K  +  + I+I G RD+++++L+M+WND Y
Sbjct: 180 LTDER--DELTETFYYEGGITAFVEHLNKNKSVIHDNIIKIDGMRDDVNVELSMQWNDSY 237

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            EN+ CFTNNIPQ+DGGTHL+G R+ALTR +  Y+E    +KK K +  GDD REG T+V
Sbjct: 238 QENIYCFTNNIPQRDGGTHLAGFRAALTRTLNQYIESEGLAKKSKVTTSGDDAREGLTAV 297

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           LS+K+PDP+FSSQTK+KLVSSEVR++VES+VN+    +L E+P +AK+I  K++DA+  R
Sbjct: 298 LSVKVPDPKFSSQTKDKLVSSEVRTIVESYVNEFFHDFLIENPNDAKLIANKMIDAARAR 357

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           DAAR+AR+LTRRKGVLDIA LPGKLADC ERDP +SELFLVEGDSAGGSAKQGR R  QA
Sbjct: 358 DAARKARELTRRKGVLDIAGLPGKLADCQERDPAQSELFLVEGDSAGGSAKQGRDRRTQA 417

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVERARFDKM+SS E+GTLITALG GIG+D +D  KLRYH IIIMTDADVD
Sbjct: 418 ILPLKGKILNVERARFDKMISSAEVGTLITALGCGIGRDEYDPEKLRYHHIIIMTDADVD 477

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G+HIRTLLLTFF+RQMP LI  G +YI +PPLY I +GK  +YVKD+  +E YL   +L+
Sbjct: 478 GSHIRTLLLTFFYRQMPELIERGHVYIAQPPLYKIKKGKQERYVKDDAEMERYLTEVALN 537

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
                  +    I  N L   + +   ++ +I     ++   F+ Q V        +D+ 
Sbjct: 538 NAALYPSEDASAIEGNALAALVTEYQTVNAIIGRLANHYYPAFLNQLVYQPEVPALTDKS 597

Query: 630 INVSLASKLANRLNF-----IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFS 684
                   +   LN       + K             + +     G+   + + G    S
Sbjct: 598 AIEPWLQTIEAALNKGLPTGTSYKLSVKQQDDEPVPLVNISFSRHGISTDYHVPGEFFAS 657

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
              +    F+N+I   +     +     K  ++     ++ + +  R+G  +QRYKGLGE
Sbjct: 658 TEYQKILSFANKINGLFTDSARVERGDRKESVSYFAEAVNWLLAEARRGQHVQRYKGLGE 717

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           MN  QLWETT++   R LL+VKI DA  AD+ F+ LMGD VEPRREFI+ ++L    LDI
Sbjct: 718 MNPDQLWETTMDKSKRRLLQVKIDDAIVADETFNTLMGDNVEPRREFIETHALQVSNLDI 777


>gi|294787816|ref|ZP_06753060.1| DNA gyrase, B subunit [Simonsiella muelleri ATCC 29453]
 gi|294484109|gb|EFG31792.1| DNA gyrase, B subunit [Simonsiella muelleri ATCC 29453]
          Length = 812

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/818 (47%), Positives = 514/818 (62%), Gaps = 23/818 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++ IQ   Y ADSIQ+L+GL+AV+KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQIQ-QEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV +N D S T+ DNGRGIPT +H +EG SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDNITVAINADESITIEDNGRGIPTGIHPKEGRSAAEVIMTILHAGGKFDNNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS WL+L I REG  + ++F  G    PL V G    N  GT V FL S 
Sbjct: 120 HGVGVSVVNALSDWLRLTIWREGKEHFVAFKRGETVEPLKVVGECDPNKHGTRVQFLASE 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F    + ++TL  R+RELSFLN+ V+I L DKR  +         GG+  FV Y    
Sbjct: 180 ETFGTVQYKFETLAKRIRELSFLNNGVKIELFDKRDGK--YENFAESGGVTGFVEYTRGS 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KKPL        G +D ++++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR 
Sbjct: 238 KKPLHDKIFYALGEKDGMTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRT 297

Query: 300 ITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           I  Y+E +      SK +K  V GDD REG T +LS+K+PDP+FSSQTK+KLVSSE+  V
Sbjct: 298 INQYIEANEIIKKSSKNNKLDVSGDDMREGLTCILSVKLPDPKFSSQTKDKLVSSEIAPV 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +   +N+ L  +LEE+P  AKII  K++ A+  R+AAR+AR+  +RK V +  +LPGKLA
Sbjct: 358 ISEVLNEHLKNFLEENPKIAKIITDKIILAATAREAARKARENIQRKNVFEGLNLPGKLA 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDK+L +QEI 
Sbjct: 418 DCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKVLDNQEIS 477

Query: 476 TLITALGTGIGQDSFDI--------NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            L  ALG   G+ + D          KLRYH++IIMTDADVDGAHIRTLLLTFF+RQMP 
Sbjct: 478 ALFAALGISFGKKTDDDSNTPKINLEKLRYHRVIIMTDADVDGAHIRTLLLTFFYRQMPE 537

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+  G++YI +PPLY    GK+ +Y+KDE+  +++L+  ++ +   +      V+   +L
Sbjct: 538 LLERGYVYIAQPPLYKAKHGKTERYLKDEQEKDEFLLGLAVDKARLV--SGSRVLEGAEL 595

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  L+    I +     D   +   +     +  ++     ++   L+  L     
Sbjct: 596 TKVAKQFLRARNTIAEESRVMDADVLRALIDVDAIDLSNENSTKRAI-EMLSGSLKNQEI 654

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS- 706
             E    G+ +N  I + R   G      L+   + S   +     + +         + 
Sbjct: 655 ALEY-VAGNDDNHFIKMTRQLHGNVMISYLDQKFVDSKAYQILLKTAEQQRGLLDAAGAE 713

Query: 707 -LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
               +GD   +      LD + +  +KG+ +QRYKGLGEMN  QLWETT+NPD R LL+V
Sbjct: 714 LFKGDGDAQTVKSFEEALDILLAGAQKGMMIQRYKGLGEMNPEQLWETTMNPDVRRLLKV 773

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           +I DA  AD  F  LMGDEVEPRR FI+ N+L +  +D
Sbjct: 774 RIEDAIAADKTFVTLMGDEVEPRRAFIENNALIAQNID 811


>gi|257091666|ref|YP_003165307.1| DNA gyrase subunit B [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257044190|gb|ACV33378.1| DNA gyrase, B subunit [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 822

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/825 (46%), Positives = 534/825 (64%), Gaps = 25/825 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +  + S+YD  SIQ L+GL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MIEENEESAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKV 116
            D I +T++ D S +V+DNGRGIPT +      E   SAAE++M  LHAGGKFNQ SYKV
Sbjct: 61  CDEIVITIHADNSISVTDNGRGIPTGIKFDDKHEPRRSAAEIVMCVLHAGGKFNQNSYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGS 164
           SGGLHGVGVS VNALS WL+L I+REG  Y + F  G            +  +PL V  +
Sbjct: 121 SGGLHGVGVSCVNALSRWLRLIIRREGKKYLLEFNRGTVVDRLLEVQKGVEVSPLRVV-A 179

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           A    GTE+ F+   +IF   +F+Y+ +  RLRELSFLN+ V+I L D+R+ +       
Sbjct: 180 ATEKRGTELHFMADEEIFGQIEFHYEIIAKRLRELSFLNNGVKIRLNDQRTGKE--EDFA 237

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNI 280
           + GG+  FV Y++R K  L  +     G        IS+++AM+WND Y E VLCFTNNI
Sbjct: 238 FLGGVRGFVEYINRTKSVLHPNIFYASGDSAGGNGVISVEVAMQWNDSYAEQVLCFTNNI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ DGGTH++GLR+A+TR I  Y+E++  +KK K  + GDD REG   VLS+KMPDP+F+
Sbjct: 298 PQADGGTHMTGLRAAMTRVINRYIEENEIAKKAKVDITGDDMREGLACVLSVKMPDPKFA 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK KLVSSE R  VE  V   LS +L+E P++AK+I  K+++A+  RDAAR+AR++TR
Sbjct: 358 SQTKMKLVSSEARPAVEEVVAAKLSEYLQERPVDAKVITGKIIEAARARDAARKAREMTR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG+LD   LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNV
Sbjct: 418 RKGLLDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+ARFDK++SSQEI TLITALGTGIG+D +   KLRYH++IIMTDADVDGAHIRTLLLTF
Sbjct: 478 EKARFDKLISSQEIATLITALGTGIGKDEYKPEKLRYHRLIIMTDADVDGAHIRTLLLTF 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP L+ +G +YI +PPLY +  GK+ +Y+KD+++L+ +L+  +L   + +      
Sbjct: 538 FYRQMPELVESGHIYIAQPPLYKVKHGKTERYIKDDQALKQFLLTLALEGAVLIPVAGAP 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L       L  + +I       +   +   + + +    +D+   ++ A  L  
Sbjct: 598 EISGSTLEQLARQYLLAEAVINRLSHLINPEVLHALIDANLAIDLADEASAMASADALMK 657

Query: 641 RLNFIAEKSEK-SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
            +    + +    +  +     + +++I  G  +  V++   + S      R  +  +  
Sbjct: 658 AVGSKLDINIVARFDTAQERWQLRLEKILHGNLKLGVIDDDLLVSGDYAQLRKTAEMLAG 717

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
            +     ++    K  ++     +  + S   + +S QRYKGLGEMN  QLWETT++P  
Sbjct: 718 LFGPGGVVVRAEKKQAVSSFAETMQWLLSEVERSVSKQRYKGLGEMNPEQLWETTMDPKV 777

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           R LL+V+I DA  AD++F+ LMG+ VEPRR FI+ N+L +  +D+
Sbjct: 778 RRLLKVQIEDAIGADEIFTTLMGELVEPRRNFIETNALAARNIDV 822


>gi|319945020|ref|ZP_08019282.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lautropia mirabilis
           ATCC 51599]
 gi|319741590|gb|EFV94015.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lautropia mirabilis
           ATCC 51599]
          Length = 851

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/828 (47%), Positives = 531/828 (64%), Gaps = 37/828 (4%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YD+ SIQIL+GL+AV+KRP MYIGDT   +GLHH+++E +DN++DE+L GY D I VT++
Sbjct: 27  YDSSSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFETVDNSVDEALAGYCDEILVTIH 86

Query: 70  MDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
            D S +V DNGRGIPTD+      +   SAAE++MT LHAGGKF+Q SYKVSGGLHGVGV
Sbjct: 87  ADESISVRDNGRGIPTDVKWDDKHDPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGV 146

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGSAGNDTGTEV 173
           S VNALS WLKL I R G  + + F  G+              +P+ V G      GTEV
Sbjct: 147 SCVNALSRWLKLTINRNGKTHFIEFERGVPKDRVIEEKDGVAISPIKVLGDTT-RRGTEV 205

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            FL    IFS  +++Y+TL  RLRELSFLN+ V+I L D R+ +       + GG+  FV
Sbjct: 206 HFLADDTIFSKVEYHYETLSKRLRELSFLNNGVRIRLQDLRNNKE--EDFAFAGGVSGFV 263

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y++R K  L  +   I+G +D ++++ A++WNDGY+E VLCFTNNIPQ+DGGTHL+GLR
Sbjct: 264 EYINRAKNVLHPNIFHIRGEKDGVTVEAALQWNDGYNEQVLCFTNNIPQRDGGTHLTGLR 323

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+TR I  Y+E++  ++K K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSEVR
Sbjct: 324 AAMTRVINKYIEENEIARKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVR 383

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +  GL  +L E P +AKII  K+++A+  R+AAR+ARD+TRRKGVLD   LPGK
Sbjct: 384 APVEDVIARGLETYLLEKPNDAKIICSKIVEAARAREAARKARDMTRRKGVLDGIGLPGK 443

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC ERDP KSELF+VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFDK+L+S++
Sbjct: 444 LADCQERDPAKSELFIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDKLLASEQ 503

Query: 474 IGTLITALGTGI----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           + TLIT LGTGI    G D F I KLRYH++IIMTDADVDG+HIRTLLLTFF+RQMP LI
Sbjct: 504 VATLITVLGTGIGSGLGSDDFKIEKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPELI 563

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI +PPLY I +G+  +Y+KD+  L+ Y++N S+ +   +       I+ + L  
Sbjct: 564 ERGYIYIAQPPLYKIKQGREERYLKDDFELDQYMLNLSMVQAALVPARDAEPITGDALAA 623

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI---- 645
                +  D +++      D   + + +     N +S  E + S     A  L  +    
Sbjct: 624 IARKYVMADAVVERLSRLMDHDTLHELMDGLALNLDSADEAHASAERLQAALLKNVHQIS 683

Query: 646 -----AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
                A +       S     + + R   G Q+  ++    + S   K     +  +   
Sbjct: 684 RSLAPAVEVTAHADESGEKWHLRIIRHLHGNQKVSIITQDFLKSSDYKVLSDVAQTLRGL 743

Query: 701 YLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
                 +            +      +  + +   KG+S QRYKGLGEMNA QLWETT++
Sbjct: 744 VGEGAEVRRGEGDKVRSQPVGSFREAMRWLLADAEKGVSRQRYKGLGEMNAEQLWETTMD 803

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + R LL+V+I DA  AD +F+ LMGD VEPRR FI+EN+L +  +D+
Sbjct: 804 VNARRLLKVQIEDAIAADQIFTTLMGDNVEPRRVFIEENALGAQNIDV 851


>gi|237747157|ref|ZP_04577637.1| DNA gyrase subunit B [Oxalobacter formigenes HOxBLS]
 gi|229378508|gb|EEO28599.1| DNA gyrase subunit B [Oxalobacter formigenes HOxBLS]
          Length = 830

 Score =  868 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/836 (46%), Positives = 527/836 (63%), Gaps = 39/836 (4%)

Query: 1   MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS N QN      ++Y   SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+ID
Sbjct: 1   MSQNTQNEVQENGNAYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFN 110
           E+L GY   I VTL+ D S +V DNGRG+PT +          SAAE++MT LHAGGKF+
Sbjct: 61  EALAGYCTEIQVTLHADNSVSVVDNGRGVPTGIKFDDKNTPKRSAAEIVMTELHAGGKFD 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NP 158
           Q SYKVSGGLHGVGVS VNALS+ L+L I R+G  + M F +G+              +P
Sbjct: 121 QNSYKVSGGLHGVGVSCVNALSTTLQLTIWRDGKEHYMDFSHGLPQNAAVEIINGVECSP 180

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + V G +    GT V F P + IF+  +F Y+ L  R+RELSFLN+ V+I L D+R+ + 
Sbjct: 181 IKVIGDSDRQ-GTRVQFWPDASIFTTVEFQYEVLARRIRELSFLNNGVRIRLTDQRTGKE 239

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENV 273
                 Y+GG   FV Y++R K  L  +  +  G R       I +D++M+WND Y+E V
Sbjct: 240 --EIFAYEGGTRGFVEYINRGKSVLHPTIFQATGERISELDTPIYVDISMQWNDSYNEQV 297

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG T VLS+K
Sbjct: 298 LCFTNNIPQRDGGTHLTGLRAAMTRVINRYIEENELAKKAKVDVTGDDMREGLTCVLSVK 357

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +P+P+FSSQTK+KLVSSEVR  VE  +   L+ +L+E P +AKII  K+++A+  R+AAR
Sbjct: 358 VPEPKFSSQTKDKLVSSEVRGPVEEIITKTLTDFLQEKPNDAKIICSKIVEAARAREAAR 417

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKGVLD   L  KLADC E+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL
Sbjct: 418 KARELTRRKGVLDGLGLSAKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRRFQAILPL 477

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNVE++R++KMLSS++I TLI  LGT IG D F+I KLRYH+IIIMTDADVDGAHI
Sbjct: 478 RGKVLNVEKSRYEKMLSSEQITTLIATLGTSIGPDEFNIEKLRYHRIIIMTDADVDGAHI 537

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           RTLLLT F+RQMP L+  G++YI +PPLY I  GK  +Y+KD+    +++++ +L     
Sbjct: 538 RTLLLTLFYRQMPQLVERGYVYIAQPPLYKIKNGKDERYLKDDLEEANHMMSIALQGASL 597

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
           L  +    IS   L+   D       +I+      D   +   +        + ++   S
Sbjct: 598 LPGEGVAPISGEQLKEMADQHTVAYNIIQRLSRFIDTDVLSAIMDGVKLRLNTIEDAEKS 657

Query: 634 LASKLANRLN-FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI 692
                A   +  +  K EK+  G++    +LV+R   G +   VL+   ++    +    
Sbjct: 658 AVELTAAINDPSVTVKVEKNASGAL---SLLVERTLYGNRHVTVLDTDFVYGNDYRILEK 714

Query: 693 FSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
            +        +   +         +  +      +  + +   +GIS QRYKGLGEMN  
Sbjct: 715 TATSFLNLIGSGAVIRRGEGDRMKQQAVQNFHQAMQWLRTEAERGISKQRYKGLGEMNPD 774

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           QLWETT++P  R LL+V+I DA  AD +F+ LMGD VEPRR FI+ ++L +  +D+
Sbjct: 775 QLWETTMDPSMRRLLKVRIEDAIAADQIFTTLMGDNVEPRRAFIENHALLAGNIDV 830


>gi|74316021|ref|YP_313761.1| DNA gyrase subunit B [Thiobacillus denitrificans ATCC 25259]
 gi|74055516|gb|AAZ95956.1| DNA gyrase, B subunit [Thiobacillus denitrificans ATCC 25259]
          Length = 823

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/828 (46%), Positives = 529/828 (63%), Gaps = 30/828 (3%)

Query: 1   MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           MS+  +       N  YD DSIQ L+GL+AV+KRP MYIGDT   +GLHHM++EVLDNAI
Sbjct: 1   MSNKPEYAMPADSNGGYDEDSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGK 108
           DE+L G+ D I V ++ D S ++SDNGRGIP      D H E   SAAE++MT LHAGGK
Sbjct: 61  DEALAGWCDDIKVIIHPDNSISISDNGRGIPVGVKFDDKH-EPKRSAAEIVMTVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF------------INGILD 156
           FNQ SYKVSGGLHGVGVS VN LS WLKL ++R+G  Y ++F             NG+  
Sbjct: 120 FNQNSYKVSGGLHGVGVSCVNGLSKWLKLVVRRDGKKYALTFNQGKVVDRAVEIQNGVEV 179

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +P+ V G      GTEV FL   +IF   +F++D L  R+RELSFLN+ V+I L+D R  
Sbjct: 180 SPMPVVGDTE-GRGTEVHFLADEEIFGKVEFHFDILAKRIRELSFLNNGVKIELLDHRDG 238

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG++ FV Y++R K  L        G +D +++++AM+WND Y E V CF
Sbjct: 239 KS--ENFAHSGGVKGFVEYMNRVKSVLHPKIFHAVGEKDGMTVEVAMQWNDSYSETVQCF 296

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G+R A+TR +  Y+E++  +KK K    GDD REG T VLS+K+P+
Sbjct: 297 TNNIPQRDGGTHLTGMRMAMTRVLNKYIEENEVAKKAKVETTGDDMREGLTCVLSVKVPE 356

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VV+  V   L+ +L E+P +AK++  K++DA+  R+AAR+AR
Sbjct: 357 PKFSSQTKDKLVSSEVQPVVQEVVGQKLAEFLLENPNDAKLLCAKIVDAARAREAARKAR 416

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGV+D   LPGKLADC E+DP  SE++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 417 EITRRKGVMDGLGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 476

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++ SQEI TLITALGT IG+D ++ +KLRYH+IIIMTDADVDGAHIRTL
Sbjct: 477 ILNVERARFDKVIGSQEIATLITALGTSIGKDDYNPDKLRYHRIIIMTDADVDGAHIRTL 536

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LLTFF+RQMP L+  G +YI +PPLY +  G+S +Y+KDE +L+++L+ +++ +      
Sbjct: 537 LLTFFYRQMPELVERGHVYIAQPPLYKVKHGRSERYIKDEHALKEHLMAEAMKDAELTPM 596

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           +    I+   L     +    + +            ++  +     +        +S AS
Sbjct: 597 EGAMPIAGEALETLAREYFLAEAVCDRLARLLPDDVLQALMRIPRLSLADSAAAMMSEAS 656

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            L   L+    +    +    ++  + + R + G      LE   + S          + 
Sbjct: 657 -LGAALDADKFEVAAEYLSETDSHRLRITRHSHGNAYVNFLEADLLESGDYDQLVKVGDM 715

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
           + +             +  +      +D   +  ++G+S+QRYKGLGEMN  QLWETT++
Sbjct: 716 LRDLMGPGARARRGEKEAPVQSFREAMDWYLAEVKRGMSIQRYKGLGEMNPEQLWETTMD 775

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R L++V+I DA  +D +F+ LMGDEVEPRR FI+ N+L    LD+
Sbjct: 776 PKVRRLMKVQIEDAISSDQIFTTLMGDEVEPRRNFIETNALGVRNLDV 823


>gi|207727476|ref|YP_002255870.1| dna gyrase (subunit b) protein [Ralstonia solanacearum MolK2]
 gi|300702377|ref|YP_003743977.1| DNA gyrase subunit B [Ralstonia solanacearum CFBP2957]
 gi|206590713|emb|CAQ56325.1| dna gyrase (subunit b) protein [Ralstonia solanacearum MolK2]
 gi|299070038|emb|CBJ41323.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
           solanacearum CFBP2957]
          Length = 842

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/846 (45%), Positives = 529/846 (62%), Gaps = 47/846 (5%)

Query: 1   MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           M++  +       +SSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+I
Sbjct: 1   MTEQQKPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKF 109
           DE+L G+   I VT++ D S +V DNGRGIPT +      E   SAAE++MT LHAGGKF
Sbjct: 61  DEALAGHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKF 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------- 155
           +Q SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F  GI               
Sbjct: 121 DQNSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHHMDFARGIPQNRLLEQAEAPDGK 180

Query: 156 ---DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
               +PL  +G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D
Sbjct: 181 MVEVSPLRTSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTD 239

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R+ +       + GG++ FV Y++++K  L  +    QG +D + ++++M+WNDG++E 
Sbjct: 240 QRTGKE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNAQGEKDGVGVEVSMQWNDGFNEQ 297

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG   VLS+
Sbjct: 298 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLACVLSV 357

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AA
Sbjct: 358 KVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAA 417

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKGVLD   LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILP
Sbjct: 418 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 477

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+H
Sbjct: 478 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 537

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTLLLTFF+RQMP +I  G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   +
Sbjct: 538 IRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYLMRQALDTAL 597

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
            +  D    I+ + L            +I+      D   +         +  S      
Sbjct: 598 LVRADGTE-IASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSAASAEA 656

Query: 633 SLASKLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSI 682
           S  +  A  L      S  +          +        ++V R   G Q    ++   +
Sbjct: 657 SAQALKARLLEMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFV 716

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQR 738
                      +   +        +         +  +T   + +  + +   +GIS QR
Sbjct: 717 AGADYATLSQTAQTFQGLIGEGAKVRRGTGDKQREQAVTDFHAAITWLLAEAERGISRQR 776

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++   R LL+V+I DA  AD +F+ LMGD+VEPRR FI+ N+L 
Sbjct: 777 YKGLGEMNPGQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIETNALV 836

Query: 799 S-ALDI 803
           +  +D+
Sbjct: 837 ARNIDV 842


>gi|83749736|ref|ZP_00946713.1| DNA gyrase subunit B [Ralstonia solanacearum UW551]
 gi|207741917|ref|YP_002258309.1| dna gyrase (subunit b) protein [Ralstonia solanacearum IPO1609]
 gi|83723588|gb|EAP70789.1| DNA gyrase subunit B [Ralstonia solanacearum UW551]
 gi|206593303|emb|CAQ60230.1| dna gyrase (subunit b) protein [Ralstonia solanacearum IPO1609]
          Length = 842

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/846 (45%), Positives = 530/846 (62%), Gaps = 47/846 (5%)

Query: 1   MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           M++  +       +SSY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+I
Sbjct: 1   MTEQQKPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKF 109
           DE+L G+   I VT++ D S +V DNGRGIPT +      E   SAAE++MT LHAGGKF
Sbjct: 61  DEALAGHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKF 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------- 155
           +Q SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F  GI               
Sbjct: 121 DQNSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHHMDFARGIPQNRLLEQAEAPDGK 180

Query: 156 ---DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
               +PL  +G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D
Sbjct: 181 MVEVSPLRTSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTD 239

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R+ +       + GG++ FV Y++++K  L  +    QG +D + ++++M+WNDG++E 
Sbjct: 240 QRTGKE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNAQGEKDGVGVEVSMQWNDGFNEQ 297

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG   VLS+
Sbjct: 298 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLACVLSV 357

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AA
Sbjct: 358 KVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAA 417

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKGVLD   LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILP
Sbjct: 418 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 477

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+H
Sbjct: 478 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 537

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTLLLTFF+RQMP +I  G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   +
Sbjct: 538 IRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYLMRQALDTAL 597

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
            +  D    I+ + L            +I+      D   +         +  S+     
Sbjct: 598 LVRADGTE-IASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSEAAAEA 656

Query: 633 SLASKLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSI 682
           S  +  A  L      S  +          +        ++V R   G Q    ++   +
Sbjct: 657 SAQALKARLLEMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFV 716

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQR 738
                      +   +        +         +  +T   + +  + +   +GIS QR
Sbjct: 717 AGADYATLSQTAQTFQGLIGEGAKVRRGTGDKQREQAVTDFHAAITWLLAEAERGISRQR 776

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++   R LL+V+I DA  AD +F+ LMGD+VEPRR FI+ N+L 
Sbjct: 777 YKGLGEMNPGQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIETNALV 836

Query: 799 S-ALDI 803
           +  +D+
Sbjct: 837 ARNIDV 842


>gi|319760166|ref|YP_004124104.1| DNA gyrase subunit B [Candidatus Blochmannia vafer str. BVAF]
 gi|318038880|gb|ADV33430.1| DNA gyrase subunit B [Candidatus Blochmannia vafer str. BVAF]
          Length = 808

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/808 (47%), Positives = 533/808 (65%), Gaps = 16/808 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           SSYD+ SI+ILKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE++ GY   I V 
Sbjct: 3   SSYDSSSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAIAGYCQKIVVI 62

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S ++ D+GRGIPT LH+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 63  IHQDNSVSIQDDGRGIPTGLHEEEGISAAEVIMTVLHAGGKFDNNSYKVSGGLHGVGVSV 122

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186
           VNALS  L+L I+R+  IY+  +  G   +PL + G + N +GT + F P+  IF +  +
Sbjct: 123 VNALSEKLELIIERDLKIYKQIYFFGKPKSPLSIVGDS-NKSGTTIRFWPNFQIFTNKIE 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y  L  R +ELSFLN+ V I L D+R+ +         GGI+ F+ YL+ +K P+  +
Sbjct: 182 FQYAVLARRFQELSFLNAGVSIVLCDERNGKE--EVFCCNGGIKEFIKYLNINKSPIHSN 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                G++  +++++A++WND + E +  FTNNIPQ+DGGTHLSGL+SA+TR +  Y++K
Sbjct: 240 IFYCMGNKGEVNVEVALQWNDSFQERIYSFTNNIPQRDGGTHLSGLKSAITRTMHFYIDK 299

Query: 307 SFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              + K  K   +G+D REG  +VLS+K+ +P+FSSQTKEKLVSSEV+  VES + + L 
Sbjct: 300 EGYNNKKTKIITLGEDAREGLVAVLSVKIQNPKFSSQTKEKLVSSEVKPAVESLIYEKLM 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +  E+P+++K I+ KV+ A+  R++AR+ RDL+RRKG+ D + LPGKL+DC E++P+ S
Sbjct: 360 EFFLENPIDSKNIIGKVISAARARESARKVRDLSRRKGLSDFSILPGKLSDCQEKNPRYS 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVMTLITALGCGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           GQ+ +++NKLRYH II+MTDADVDGAHIRTLLLTFF+R MP +I  G ++I +PPLY + 
Sbjct: 480 GQNEYNLNKLRYHSIILMTDADVDGAHIRTLLLTFFYRHMPEIIERGHIFIAQPPLYKVQ 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELF-CDSKGVISKNDLRNFIDDALKIDKLIKDF 604
           +G   +Y+KDEE +  Y I+ +          +    +S+  L+  I +   I K+I   
Sbjct: 540 KGIQSKYLKDEEEMYQYQISIAARHARLYLDVNDTFPLSEKMLKKLILEYFVIQKIIVRM 599

Query: 605 YPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                K  + + +   V + E              L   L+   E  + + +  +   +I
Sbjct: 600 ERQFPKVLLNRLIYHPVLSTEQCLVYSDVEIWIQSLVESLSRFQEYGDGNDYSFVIQKNI 659

Query: 663 -------LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                  +++    GV   ++L    I S+       F  ++ E  L+   +        
Sbjct: 660 KEKYFVPILRIRTYGVDRDYLLGLDLIQSYEYGKLVSFGKKMNELLLSNGYIEYEDCHKN 719

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I      ++ +    RKG+ +QRYKGLGEMN  QLWETT+NP  R +LRV + DA +AD+
Sbjct: 720 INSFNQAIEWLMQQSRKGLIIQRYKGLGEMNPDQLWETTMNPQNRCMLRVTVKDAIEADN 779

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802
           LFS LMGD VEPRR FI+ N+L +  +D
Sbjct: 780 LFSTLMGDLVEPRRAFIEANALKATNVD 807


>gi|165922503|ref|ZP_02219674.1| DNA gyrase, B subunit [Coxiella burnetii RSA 334]
 gi|165916708|gb|EDR35312.1| DNA gyrase, B subunit [Coxiella burnetii RSA 334]
          Length = 779

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/782 (49%), Positives = 519/782 (66%), Gaps = 12/782 (1%)

Query: 31  YIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE 90
           YIGDTD  SGLHHM++EV+DN+IDE+L G+   I VT++ DGS +V DNGRGIPTD+H E
Sbjct: 1   YIGDTDDGSGLHHMVFEVVDNSIDEALAGFCSHIWVTIHADGSVSVRDNGRGIPTDIHPE 60

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG SAAEVIMT LHAGGKF++ +YKVSGGLHGVG+SVVNALS  L + I++ GNIY  ++
Sbjct: 61  EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLHGVGISVVNALSEELYMTIRQNGNIYTQTY 120

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL 210
             G+   PL VTG + + TGTE+ F PS+ IFS  +F+YD L  RLREL+FLN  V+I L
Sbjct: 121 KMGVPQAPLAVTGKS-DKTGTEIRFKPSNAIFSNTEFHYDILAKRLRELAFLNLGVRIEL 179

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D+RS   R     Y+GGI+AFV +L++ K P+          +++I +++AM+WNDG+ 
Sbjct: 180 TDERSG--RGDIFEYEGGIKAFVEHLNKKKTPIHSDVFHFSTEKNDIVVEVAMQWNDGFQ 237

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E + CFTNNIPQ DGGTHL+G R+ALTR + +Y+E    +KK K ++ GDD REG T VL
Sbjct: 238 ETIFCFTNNIPQNDGGTHLAGFRAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVL 297

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP+FSSQTK+KLVSSEV+ VVES V   L  +L E+P +A+II  KV+DA+  R+
Sbjct: 298 SVKVPDPKFSSQTKDKLVSSEVKPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARARE 357

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+ARD+TRRK VLD+  LPGKLADC E+DP   ELFLVEGDSAGGSAKQ R R  QAI
Sbjct: 358 AARKARDMTRRKNVLDLGGLPGKLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAI 417

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG++ ++ +KLRYH+II+MTDADVDG
Sbjct: 418 LPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDG 477

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           +HIRTLLLTFF+RQMP LI  G +YI +PPLY + + K  QYVKD+ +L+  L+  +L  
Sbjct: 478 SHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKKSKQEQYVKDDLALDALLLQLALDG 537

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQ 628
                      I  + L N         + I      +    +++ +           ++
Sbjct: 538 AQFHPTPQAPAIQGSALENLAAHYRTAMRSINRLGKRYPLYILKRLLNFPPLTVADLSEE 597

Query: 629 EINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQEQFVLEGSSI 682
           E  ++   +L  +LN    ++   +               +V  I  G+ +Q +      
Sbjct: 598 EKVIAWTQRLEEQLNEPKTENSLRYQTAIKKDAERELYLPMVTIINHGIAQQHLFHQEFF 657

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742
                ++     N+I         ++ N  +  +T     L+     G+KG+++QRYKGL
Sbjct: 658 GCADYRHLVDLYNKISGLIEPGAYIVRNDKRRTVTHFGEALEWFIEEGKKGLNIQRYKGL 717

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801
           GEMN  QLWETT++ ++R LL V I DA  AD++F+ LMGD+VEPRR FI++N+L    L
Sbjct: 718 GEMNPDQLWETTMDRESRRLLSVSIEDAVMADEIFTTLMGDQVEPRRLFIEQNALAVENL 777

Query: 802 DI 803
           D+
Sbjct: 778 DV 779


>gi|148262089|ref|YP_001228795.1| DNA gyrase, B subunit [Geobacter uraniireducens Rf4]
 gi|146395589|gb|ABQ24222.1| DNA gyrase subunit B [Geobacter uraniireducens Rf4]
          Length = 794

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/806 (48%), Positives = 531/806 (65%), Gaps = 15/806 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD+  +  Y AD I++L+GL AV+KRP+MYIG T    GLHH++YE++DN+IDE+L G+
Sbjct: 1   MSDDTTSKDYGADKIKVLEGLSAVRKRPAMYIGSTS-VQGLHHLVYEIVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N+DGS TV DNGRGIPTD+H  EG SAAEV++T LHAGGKF+  SYKVSGGL
Sbjct: 60  CDDILVTINVDGSVTVVDNGRGIPTDMHPTEGKSAAEVVLTVLHAGGKFDNSSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G ++  S+  G    PL V G      GT++TF P  +
Sbjct: 120 HGVGVSVVNALSKKLELEIRRDGKLFRQSYRCGDPQGPLEVVGETK-KRGTKITFFPDDE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F++DTL  RLRE++FLN+ V+I ++D+R+ +  E   FY+GGI +FV YL+++K
Sbjct: 179 IFETTEFSFDTLSQRLREMAFLNAGVRIKIVDERTEKVHE--FFYEGGINSFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   PI I G +  + +++AM++ND Y E +  F NNI   +GGTHL G ++ALTR +
Sbjct: 237 TPIHPKPIYISGEKGGVEMEIAMQYNDSYDEKIFTFANNINTHEGGTHLIGFKAALTRTM 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y   +   K  K ++ G+D REG TSV+S+K+P P+F  QTK KL +SEV+  VE+ +
Sbjct: 297 NTYANANNLLKNVKENISGEDLREGLTSVISVKIPQPQFEGQTKTKLGNSEVKGYVETLM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ +LEE+P  AK I++K +DA+  R+AARRARDLTRRKG L++ +LPGKLADC E+
Sbjct: 357 NEKLATYLEENPQIAKRILEKSIDAARAREAARRARDLTRRKGALEVGTLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQEI TLI A
Sbjct: 417 DPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSSQEIRTLIAA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGT IG+  FDI KLRYH+IIIMTDADVDG+HI TLLLTFFFRQM  +I  G+LYI +PP
Sbjct: 477 LGTSIGKGDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMLEMIERGYLYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I RG+  QY+K+E +L++YL+ +   +        +       +   +   ++ + L
Sbjct: 537 LYKIKRGRKEQYLKNEAALQNYLLEEGTEDMTLRLGSDERTYRGKQIIPLLKQLIEHNSL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                       + +  +          E    L   LA       ++S       ++  
Sbjct: 597 FGKVVKKGLNEELLKMFLKSGVKSGF--EELRDLEPYLAKM-----KESFAGSDYVVSEQ 649

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI--KITG 718
            I+       V        +++ S+  +      NRIE+    + + +   +K   +   
Sbjct: 650 KIIFMIGNVRVSIDHH-TVAALNSYEYELLAESQNRIEKLIGDVKATVSTEEKQLFESES 708

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              LL   F   +KG+ +QRYKGLGEMN  QLWETT++P+ R LL+VKI D  +A+++F+
Sbjct: 709 HEELLAFFFETAKKGLYIQRYKGLGEMNPEQLWETTMHPENRVLLQVKIEDIVEAEEIFT 768

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRREFI++N+L    LDI
Sbjct: 769 VLMGDQVEPRREFIEQNALNVSNLDI 794


>gi|317401670|gb|EFV82295.1| DNA gyrase subunit B [Achromobacter xylosoxidans C54]
          Length = 815

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/822 (46%), Positives = 533/822 (64%), Gaps = 26/822 (3%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD      +N  Y ADSI++LKGL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+
Sbjct: 1   MSDQQNTTPENGGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114
           L GY D I VT++ D S +V+DNGRGIPTD+HK  E   SAAE++MT LHAGGKF+Q SY
Sbjct: 61  LAGYCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFHRSAAEIVMTELHAGGKFDQNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVS VNALS WL+L I+R G +++M F  G    PL VTG   +  GTEV 
Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGEVHQMEFRQGERVAPLAVTG-TTDKRGTEVR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL    IF+  +++Y+ L  RLRELSFLN+ V+I LID+R  +       + GG++ FV 
Sbjct: 180 FLADPIIFTNVEYHYEILSKRLRELSFLNNGVKIRLIDQRQGKE--ENFAFSGGVKGFVE 237

Query: 235 YLDRHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           Y++R K  L  +   +          + +++AM+WND Y E+VLCFTNNIPQ+DGG+HL+
Sbjct: 238 YINRAKTVLHPNVFSVTTESTAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSHLT 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR I  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 298 GLRAAMTRIINKYITDNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  V   L  WL EHP +AK +  K+++A+  R+AAR+AR++TRRK VL+ A L
Sbjct: 358 EVRPAVEEAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++
Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TLITALGT IG   F+++KLRYH++IIMTDADVDGAHIRTLLLT  +RQMP L+ 
Sbjct: 478 SEQIATLITALGTSIG-PDFNVDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVQ 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI +PPLY +  G+  +Y+KD++    +++  +L +   +      +I  ++L   
Sbjct: 537 RGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQLALKDAEII--AGGNIIRGDELNEL 594

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS---LASKLANRLNFIAE 647
               +  D +I       D   +         N ++ +    S   LA  + + ++    
Sbjct: 595 ARQYVAADGVIARLSRVFDVAALSAMAEGVEINLDTAEAAADSAKRLADAMRDPISGNGV 654

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
           +    +  +     + ++R+  G     +++   I           +       +   SL
Sbjct: 655 EVVPEFDAATERHRLSIQRMHHGNVRVSIIDADFIGGSDYAILSKAAKSFS-GKVGPQSL 713

Query: 708 ICNGD-----KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
           +  G+     +  ++     +  + S   +GIS QRYKGLGEMN  QLWETT++P  R L
Sbjct: 714 VARGEGDKRKEQTVSDFREAMQWLRSEADRGISKQRYKGLGEMNPDQLWETTMDPKVRRL 773

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LRV+I DA  AD++F+ LMGD+VEPRR FI+ ++L +  +D+
Sbjct: 774 LRVQIEDAIAADEVFTTLMGDDVEPRRNFIEAHALSAGNIDV 815


>gi|78221232|ref|YP_382979.1| DNA gyrase subunit B [Geobacter metallireducens GS-15]
 gi|78192487|gb|ABB30254.1| DNA gyrase subunit B [Geobacter metallireducens GS-15]
          Length = 795

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/807 (47%), Positives = 535/807 (66%), Gaps = 16/807 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D + N+ Y AD I++L+GL+AV+KRP+MYIG T  + GLHH++YE++DN+IDE+L GY
Sbjct: 1   MADEL-NNDYGADKIKVLEGLEAVRKRPAMYIGSTASQ-GLHHLVYEIVDNSIDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + + VT+++DGS TV DNGRGIPT++H  EG  AAEV +T LHAGGKF+  SYKVSGGL
Sbjct: 59  CNEVNVTIHLDGSITVVDNGRGIPTEMHPTEGKPAAEVALTVLHAGGKFDNTSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G +++ S+  G    PL + G      GT +TFLP   
Sbjct: 119 HGVGVSVVNALSKKLELGIRRDGKVFQQSYAYGAPLTPLEIVGETK-KRGTRITFLPDDT 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F++D L  RLREL+FLN+ V+I++ D+R  E +     Y+GGI +FV YL+R++
Sbjct: 178 IFETTEFSFDILSQRLRELAFLNAGVRITISDER-EEGKHHDFHYEGGIVSFVEYLNRNR 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L   P+  +G R  I +++A+++ND Y E V  F NNI   +GGTHL G R+ALTR +
Sbjct: 237 TVLHPKPVYFRGERAGIDMEIAIQYNDSYDEKVFTFANNINTHEGGTHLVGFRAALTRSM 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY   +  +KK+K S+ G+D REG T+V+S+K+P P+F  QTK KL +SEV+  VES +
Sbjct: 297 NSYAAANELTKKEKVSISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGFVESLM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ +LEE+P  AK I+ K ++A+  R+AAR+AR+LTRRK  LDI+SLPGKLADC ER
Sbjct: 357 NEQLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKSALDISSLPGKLADCQER 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQEIGTLITA
Sbjct: 417 DPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGT IG++ FD+ KLRYH+II+MTDADVDG+HI TLLLTFFFRQMP ++  G LYI +PP
Sbjct: 477 LGTSIGKEDFDVAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RG+   Y+++E +++ YL+ +   + +    + +   +   +   +   ++   +
Sbjct: 537 LYKVKRGRKELYLRNEAAMQAYLLEEGTEDMVLFLENGEKTYTGKQIIPILKQLVEYRTI 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           +           + +  +          +  +    +L   L  I+   E      +++ 
Sbjct: 597 LDKVVRKGINEELIRVFL------RLGVKAGIEDMEQLVPYLANISRVYEGGDSSPLDDG 650

Query: 661 DILVKR-IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             +V+    R   +Q  L+   I S+          ++ E +    +++ +  K      
Sbjct: 651 RAIVRLGNLRIALDQHTLDI--IGSYEYGLLAESFRKVREMFGDGRAVVSSEGKELFATA 708

Query: 720 --CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
               LL       +KG+S+QRYKGLGEMN  QLWETT+ P  R+LL+VKI DA +AD +F
Sbjct: 709 IGLDLLSFFMDSAKKGLSIQRYKGLGEMNPDQLWETTMEPTNRTLLQVKIEDAIEADTIF 768

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMGD+VEPRR+FI++N+L    LDI
Sbjct: 769 TILMGDQVEPRRDFIEKNALNVSNLDI 795


>gi|6580765|gb|AAF18271.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 822

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/799 (52%), Positives = 563/799 (70%), Gaps = 16/799 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ + Q+  YDA SI++L+GLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+L GY
Sbjct: 1   MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS----YKV 116
            D++ + +  DGS +V DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF+  +    YKV
Sbjct: 61  CDLVKIAIYDDGSVSVEDNGRGIPTGIHPEEGVSAAEVIMTQLHAGGKFDNNANSNAYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS +L+L + R+G  + M F +G+   PL V G A +  GT V F 
Sbjct: 121 SGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRFH 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F + +FN++ L+HR REL+FLNS V++ L DKR+   + + +FY+GGI AFV +L
Sbjct: 180 PSAETFKITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVELFYEGGIAAFVKWL 239

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR K  L+  P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+  R+AL
Sbjct: 240 DRAKTALIPEPVAIHGDRDDVMIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAFRAAL 299

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y +KS   KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR  +
Sbjct: 300 TRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPL 359

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES + D ++ WLEE+P  AK+I++K++DA+  R+AA+RAR+LTRRKGV+DIASLPGKLAD
Sbjct: 360 ESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLAD 419

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP KSE+F+VEGDSAGGSAKQGR+R NQAILPL+GKILN ER+R D+MLSS+E+GT
Sbjct: 420 CQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEVGT 479

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI ALGTGI +D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+R MP +I NG LYI
Sbjct: 480 LIQALGTGI-RDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPEIIENGHLYI 538

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPL+ + + +S  Y+KDE +L++YL++  ++  +       GV S NDL   ++ A +
Sbjct: 539 AQPPLFKVAKNRSEVYLKDEAALDNYLMDAGVASMMLH--TDNGVRSGNDLHQMVEHARR 596

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
              L+      +    IE A ++G F  +   E    +  ++A  L     +S+  W   
Sbjct: 597 TRLLMNYVPNRYYAPLIETAALAGAFQSDIADEKRQDILKQVAEILTRSDSESDARWSVE 656

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT--ILSLIC----- 709
                 L +R+ RGV +   L+ + I S  +      +    E+Y++     L+      
Sbjct: 657 FIPEGFLFRRLWRGVTDAHTLDWNFIQSSEAAKLHQLAQEQAESYISTHPARLVTLAAQM 716

Query: 710 -NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  I  P  L + I ++G KG+S+ RYKGLGEMN  QLWETTL+P  RS+L+V++ 
Sbjct: 717 DEEAGQDIYRPSQLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVE 776

Query: 769 DASQADDLFSRLMGDEVEP 787
            A  AD +FSRLMGD VEP
Sbjct: 777 QADVADGIFSRLMGDVVEP 795


>gi|187927115|ref|YP_001897602.1| DNA gyrase subunit B [Ralstonia pickettii 12J]
 gi|241661628|ref|YP_002979988.1| DNA gyrase subunit B [Ralstonia pickettii 12D]
 gi|309780180|ref|ZP_07674931.1| DNA gyrase, B subunit [Ralstonia sp. 5_7_47FAA]
 gi|187724005|gb|ACD25170.1| DNA gyrase, B subunit [Ralstonia pickettii 12J]
 gi|240863655|gb|ACS61316.1| DNA gyrase, B subunit [Ralstonia pickettii 12D]
 gi|308920883|gb|EFP66529.1| DNA gyrase, B subunit [Ralstonia sp. 5_7_47FAA]
          Length = 842

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/846 (45%), Positives = 527/846 (62%), Gaps = 47/846 (5%)

Query: 1   MSDNIQN-------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           M++  +        +SYDA SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+I
Sbjct: 1   MTEEQKPQSTPAEANSYDAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKF 109
           DE+L G+   I VT++ D S +V DNGRGIPT +      E   SA E+ MT LHAGGKF
Sbjct: 61  DEALAGHCTEIQVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSATEIAMTELHAGGKF 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------- 155
           NQ SYKVSGGLHGVGVS VN LS W+K+ +++ G ++ + F  G+               
Sbjct: 121 NQNSYKVSGGLHGVGVSCVNGLSKWMKVTVRQGGKVHYIEFAQGVPQNRLIETVQGPDGQ 180

Query: 156 ---DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
               +PL V G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D
Sbjct: 181 MVEVSPLRVLG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIRLTD 239

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R+ +       + GG++ FV Y++++K  L  +     G +D ++++++M+WND Y+E 
Sbjct: 240 QRTGKE--EDFAFSGGVKGFVEYINKNKTVLHPTIFFAAGEKDGVAVEVSMQWNDAYNEQ 297

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+
Sbjct: 298 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVDTSGDDMREGLTCVLSV 357

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+FSSQTK+KLVSSEVR  VE  V   LS +L E P++AKII  K+++A+  R+AA
Sbjct: 358 KVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALSDFLLETPVDAKIICGKIVEAARAREAA 417

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKGVLD   LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILP
Sbjct: 418 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 477

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+H
Sbjct: 478 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 537

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTLLLTFF+RQMP +I  G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   +
Sbjct: 538 IRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLVRQALDTAV 597

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
            +  D    I+ + L            +I+      D   +         +  ++     
Sbjct: 598 LVRPDGTE-IAGDALAELARQYQLSRGVIERLSRVIDADALRAIAEGVSLDLSNEAAAEA 656

Query: 633 SLASKLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSI 682
           S  +  A  L      S  +          +        I+V R   G Q    ++   +
Sbjct: 657 SARTLKARLLEMQGNASSANGGATADAFMQYDEKTEKYRIMVVRRQHGNQRLSHIDADFV 716

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQR 738
                      +   +        +         +  +    + +  + S   +G+S QR
Sbjct: 717 AGADYTALSSTAATFQGLIGDGAKVRRGTGDKVREQNVADFHAAMTWLLSEAERGVSRQR 776

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++   R LLRV+I DA  AD +F+ LMGD+VEPRR FI+ N+L 
Sbjct: 777 YKGLGEMNPEQLWETTMDVTQRRLLRVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALV 836

Query: 799 S-ALDI 803
           +  +D+
Sbjct: 837 ARNIDV 842


>gi|114326985|ref|YP_744142.1| DNA gyrase subunit B [Granulibacter bethesdensis CGDNIH1]
 gi|114315159|gb|ABI61219.1| DNA gyrase subunit B [Granulibacter bethesdensis CGDNIH1]
          Length = 810

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/817 (52%), Positives = 575/817 (70%), Gaps = 21/817 (2%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD       + +YDA SI +L+GLDAV+KRP MYIGDTD  SGLHHM +E++DNA+DE+
Sbjct: 1   MSDPTPLPPDSDAYDASSISVLRGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
             G+A  +T+TLN DGS TV+D+GRGIPTD+H EEGISAAEV++TRLHAGGKFNQ SYKV
Sbjct: 61  QAGFASEVTLTLNGDGSVTVTDDGRGIPTDIHAEEGISAAEVVLTRLHAGGKFNQNSYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG +VVNALS W+++RI REG  + + F +G  + PLV  G +   +GT+VTF 
Sbjct: 121 SGGLHGVGAAVVNALSEWMEVRIWREGREHFIRFRHGDAEAPLVEIGPSPRGSGTQVTFK 180

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS+  F+  +F + TL+ RLREL+FLNS ++I L D+R    +E    Y+GG+ AFV +L
Sbjct: 181 PSNLTFTRVEFEFATLERRLRELAFLNSGLKIVLRDERHVPAQESVFCYEGGLTAFVEWL 240

Query: 237 DRHKKPLMQSPIRIQG----SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           DR K  L   PI   G     + +I ++ ++ WND +HE +LCFTNNIPQ+DGGTHL+G 
Sbjct: 241 DRGKVALFDPPISAAGSANADQGDIKVEFSLVWNDSFHETMLCFTNNIPQRDGGTHLAGF 300

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR ++ Y E       ++ +++G+D REG T+VLS+K+PDP+FSSQTKEKLVSSEV
Sbjct: 301 RQALTRVVSKYAEGLGKK--EQLALVGEDMREGMTAVLSVKVPDPKFSSQTKEKLVSSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + VV + V D +  W E HP E + I++K +DA+  R+AARRAR+LTRRKGVLDI+SLPG
Sbjct: 359 QPVVHAAVADAIGHWFETHPKETRSIIQKAMDAASAREAARRARELTRRKGVLDISSLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP K E+F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+ML S 
Sbjct: 419 KLADCQERDPSKCEIFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDRMLGSA 478

Query: 473 EIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           EIGTLITALGTGIG+       FDI KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP 
Sbjct: 479 EIGTLITALGTGIGRGEPEQGGFDIAKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPQ 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L  NG LYI +PPL+  TRGK  +Y+KDE +LE+YL++++L+E      D   V + ++L
Sbjct: 539 LFTNGHLYIAQPPLFKATRGKDERYLKDERALEEYLLSKALNEAQLTLAD-GRVFAGDEL 597

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
              ++    +   ++          +EQAV++G    +            L+ RLN I+ 
Sbjct: 598 AEEVNHLRDVAARMRRLAGGIPLALLEQAVVAGALRPD----ATPDTLQTLSARLNAISP 653

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
            SE+ W  +     + ++R  RGV E+  LE +++ S  +++    ++++   Y   +SL
Sbjct: 654 ASERGWIVASEGEGLTMRRTVRGVAERHTLEATALRSAEARWLAERTDQLAARYTQPVSL 713

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
             +  ++++ GP S+L+ I + GRKG+S QR+KGLGEMN  QLW TTL+P TR+LL+VK+
Sbjct: 714 ALDAARLELAGPASVLERILAHGRKGLSFQRFKGLGEMNPEQLWSTTLDPATRTLLQVKV 773

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            D   A  +FS LMGD VEPRR+FI  N+L    LD+
Sbjct: 774 GDIEDAGQIFSTLMGDVVEPRRDFIVGNALKVANLDV 810


>gi|296282200|ref|ZP_06860198.1| DNA gyrase, B subunit [Citromicrobium bathyomarinum JL354]
          Length = 839

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/847 (51%), Positives = 562/847 (66%), Gaps = 52/847 (6%)

Query: 1   MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M +N +N      Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+
Sbjct: 1   MDENTKNGRNTGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQK 112
           L G+ D++ + LN DGS  V DNGRGIP D+HK EG+SAAEVIMT+LHAGGKF    +  
Sbjct: 61  LAGHCDLVLIELNPDGSVAVEDNGRGIPVDMHKGEGVSAAEVIMTQLHAGGKFENTSDDN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN----- 167
           +YKVSGGLHGVGVSVVNALS WL+L I R+G  + M F +G     L V G A       
Sbjct: 121 AYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHWMRFEHGDAVASLEVRGDAPPVDSNG 180

Query: 168 -----DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
                  GT VTF  S D F    +F+++ L+HR REL+FLNS V I L D+R  + +E 
Sbjct: 181 DENGLKKGTRVTFKASEDTFKNVTEFDFEKLEHRYRELAFLNSGVHIKLRDRRGEDVQEH 240

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
            +FY+GGI AFV+YLDR+K  L+  PI +   +D I ID+A+ WND Y+ENVL FTNNIP
Sbjct: 241 DLFYEGGIAAFVNYLDRNKDALIPEPISVSAEKDGIGIDVALEWNDSYYENVLAFTNNIP 300

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+  R+ALTR + +Y   S   KK+K S+ G+D REG T+++S+K+PDP+FSS
Sbjct: 301 QRDGGTHLAAFRTALTRTLNNYAAASGLLKKEKVSLSGEDMREGLTAIVSVKLPDPKFSS 360

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVRS +ES + D ++ WLEE+P  AK IV+KV+DA      A R      R
Sbjct: 361 QTKDKLVSSEVRSPLESLMGDKMTEWLEENPNHAKAIVQKVVDA-AAAREAARRAREMSR 419

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG + +ASLPGKLADC ERDP K ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE
Sbjct: 420 KGAMSVASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVE 479

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           RARFD+++SS+E+GTLI A+GTGI +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF
Sbjct: 480 RARFDRIISSKEVGTLIQAMGTGI-RDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFF 538

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
            RQ+P ++ NG L+I +PPLY + RG+S  Y+KDE +L+ YL+ + L + +        V
Sbjct: 539 HRQLPEIVKNGHLFIAQPPLYKVARGRSEVYLKDERALDRYLVAEGLQDRVLDSATG--V 596

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
            +  DL   +D AL++  L+      +D   +E   ++G F+ E+          + A R
Sbjct: 597 RAGADLSALVDHALRMRNLLAYAPRKYDTAIVETLAMAGAFDPENL--AAGDALDRAAAR 654

Query: 642 LNFIAEKSEKSWHGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
           L      +E  W G  + +  I++ R+ RGV +  ++E   + S  ++     +    + 
Sbjct: 655 LQMG--DTEAKWSGERSPDGGIMLSRLWRGVTDTHLIEEKFLESAEARKLHKVAAENLDA 712

Query: 701 YLTILSLIC--------------------NGDKI---KITGPCSLLDTIFSIGRKGISMQ 737
           Y +   L+                         +    I  P  L D + + GRKG+S+Q
Sbjct: 713 YESAAKLVKPSAVEDAPEPDSEDDGGTPDRSATVGQGTIIRPTQLFDAVIAAGRKGLSVQ 772

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMNA QLWETTL+PD R+LL+VKI DA   D++FSRLMGD VE RREFIQ+N+L
Sbjct: 773 RYKGLGEMNAEQLWETTLDPDNRALLQVKIEDADVTDEIFSRLMGDVVETRREFIQDNAL 832

Query: 798 PS-ALDI 803
               LDI
Sbjct: 833 NVANLDI 839


>gi|217968468|ref|YP_002353702.1| DNA gyrase subunit B [Thauera sp. MZ1T]
 gi|217505795|gb|ACK52806.1| DNA gyrase, B subunit [Thauera sp. MZ1T]
          Length = 833

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/829 (45%), Positives = 519/829 (62%), Gaps = 32/829 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +    +  YD  SIQ L+GL+AV+KRP MYIGDT   +GLHHM++EV+DN+IDE+L G+ 
Sbjct: 10  ASAKAHEDYDETSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNSIDEALAGHC 69

Query: 62  DIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           D I +T++ D S +V+DNGRGIP      D H E   SAAE++M  LHAGGKFNQ SYKV
Sbjct: 70  DDIVITIHADNSISVTDNGRGIPVGVKMDDKH-EPKRSAAEIVMCVLHAGGKFNQNSYKV 128

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGS 164
           SGGLHGVGVS VNALS W+ + + R+G  + + F  G               +P  V G 
Sbjct: 129 SGGLHGVGVSCVNALSKWMNVTVARDGKRHLLEFERGKPQNRVIEVVDGVEVSPARVIGE 188

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
                GT+V +L   +IF   +++YD L  RLRELSFLN+ V+I LID+R+ +       
Sbjct: 189 TT-KRGTKVHYLADEEIFGTIEYHYDILAKRLRELSFLNNGVKIRLIDQRTGKE--EDFA 245

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRI---------QGSRDNISIDLAMRWNDGYHENVLC 275
           + GG++ FV Y++R K  L  +              G    +++++AM+WND Y E VLC
Sbjct: 246 FAGGVKGFVEYINRAKTVLHPNVFYATGTTRIPTGHGHDAELAVEVAMQWNDSYQEQVLC 305

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           +TNNIPQ DGGTHL+GLR+A+TR I  Y+E++  +KK K  + GDD REG   VLS+KMP
Sbjct: 306 YTNNIPQADGGTHLTGLRAAMTRVINKYIEENEIAKKAKVDITGDDMREGLACVLSVKMP 365

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F+SQTK KLVSSE R  VE  V   L  +L E+P++AK I  K+++A+  RDAAR+A
Sbjct: 366 DPKFASQTKMKLVSSEARPAVEEVVASKLGDFLLENPIDAKTICNKIVEAARARDAARKA 425

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKGVLD   LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 426 REMTRRKGVLDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKG 485

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDK+L SQEI TLITALGT IG+D +   KLRYH+II+MTDADVDGAHIRT
Sbjct: 486 KILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRIILMTDADVDGAHIRT 545

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLTFF+RQMP L+  G +YI +PPLY I  GKS  Y+KD+  L ++L+  +L   + + 
Sbjct: 546 LLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKSEMYIKDDSELSNHLLRLALDGAVLVP 605

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +    IS+  L       L  + + +      D   ++  +   +     D+    + A
Sbjct: 606 REGADPISEEALGGLARTYLLAEAVTRRLASYIDPEVLQVMLAHDIEVSLDDEAAARASA 665

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
            ++   L    +     +H       + ++R+  G ++   +E   + S   +  R  + 
Sbjct: 666 ERIQPHLPEGLQIY-AEYHDEAEGWRLTIERLHHGNRKFGWVEHDFLVSGDYRAIRNAAE 724

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755
            I         +     +  ++     +  + +   +GI+ QRYKGLGEMN  QLWETT+
Sbjct: 725 AISGLIGPGAEIRRGEKRQTVSRFADAIKWMLADVERGITKQRYKGLGEMNPEQLWETTM 784

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +P  R LLRV+I DA  AD++F+ LMGD VEPRR FI+ N+L +  +D+
Sbjct: 785 DPAVRRLLRVQIDDAIAADEIFTTLMGDNVEPRRAFIEGNALYAQNIDV 833


>gi|258542323|ref|YP_003187756.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633401|dbj|BAH99376.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636460|dbj|BAI02429.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639513|dbj|BAI05475.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642569|dbj|BAI08524.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645624|dbj|BAI11572.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648677|dbj|BAI14618.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651730|dbj|BAI17664.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654721|dbj|BAI20648.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 812

 Score =  863 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/817 (52%), Positives = 568/817 (69%), Gaps = 19/817 (2%)

Query: 1   MSD------NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M+D      +  +  YDA SI +LKGLDAV+KRP MYIGDTD  SGLHHM +E++DNA+D
Sbjct: 1   MTDLSQPTPSAVSEEYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVD 60

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+  G+A    VT N DGS +V DNGRGIPTD+H EEGISAAEV++TRLHAGGKFNQ SY
Sbjct: 61  EAQAGFASRCIVTFNADGSVSVRDNGRGIPTDMHAEEGISAAEVVLTRLHAGGKFNQNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG +VVNALS W+++RI R G  + + F +G  D PL V G +   +GTEVT
Sbjct: 121 KVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHFIRFQHGERDAPLEVVGPSSEPSGTEVT 180

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PSS+ F   DF++  L+ RLREL+FLNS ++I L D R    RE   FY+GG+EAFV+
Sbjct: 181 FKPSSETFPKTDFDFTILERRLRELAFLNSGLEIVLRDARVTPVREEKFFYEGGLEAFVN 240

Query: 235 YLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           +LDR +  L        ++   + I ++ A+ WND +HE +LCFTNNIPQ+DGG HL+G 
Sbjct: 241 WLDRSRTSLFAPPITGSLENPDNGIKVEFALTWNDSFHETMLCFTNNIPQRDGGAHLAGF 300

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR +  Y E    +KKD  S+ G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 301 RQALTRVVGKYAES--IAKKDAHSLQGEDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + VV +   D +S W E HP EAKI++ KVLDA+  R+AAR+AR+LTRRKGVLD++SLPG
Sbjct: 359 QPVVHAAAADIISHWFETHPKEAKIVISKVLDAASAREAARKARELTRRKGVLDVSSLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC  RDP K+ELF+VEGDSAGG+AKQGR R  QAILPL+GKILNVERARFD+ML S 
Sbjct: 419 KLADCQARDPAKAELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSA 478

Query: 473 EIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           EIGTLITALGTGIG+       F I KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP 
Sbjct: 479 EIGTLITALGTGIGRGEPEQGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPE 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G+LYI +PPLY   RG    Y+KD+ +LE YL+N++L+    ++ D K V+S  +L
Sbjct: 539 LIERGYLYIAQPPLYRAKRGNEETYLKDDAALEQYLLNKALNNASFVYTD-KRVVSGEEL 597

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
              +    +  + I           IEQ  ++G    +   E        L  RL+  + 
Sbjct: 598 AADLPFIRQAAQAINRLSNRIPSWIIEQVALAGALTTDV--EQLQQRMPALQRRLDAASA 655

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
           ++EKSW    +   + + R  RGV E + ++ + + S  +++  + +NR+++++   ++L
Sbjct: 656 ENEKSWKAVASADGVELARNVRGVGEVYRIDPTMLASNDARWLTMQANRLQKDFAEGVAL 715

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
             +  + +++GP  L   + + GR+G+++ R+KGLGEMN +QLWETTL+P  R+LL+V++
Sbjct: 716 KNDTTEHQLSGPADLYARLLAQGRRGLTINRFKGLGEMNDAQLWETTLDPAMRTLLQVRV 775

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            D  +A D+F+ LMGD VEPRR+FI  N+L    LD+
Sbjct: 776 GDVEEAGDVFTTLMGDIVEPRRDFIVGNALKVANLDV 812


>gi|189423086|ref|YP_001950263.1| DNA gyrase B subunit [Geobacter lovleyi SZ]
 gi|189419345|gb|ACD93743.1| DNA gyrase, B subunit [Geobacter lovleyi SZ]
          Length = 802

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/811 (46%), Positives = 527/811 (64%), Gaps = 17/811 (2%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+        ++ Y A SI++L+GL AV+KRP+MYIG T   +GLHH++YE++DN+IDE
Sbjct: 1   MSEFEQNGTAASNEYGAGSIKVLEGLSAVRKRPAMYIGST-ASAGLHHLVYEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+ + ++VT+N DGS TV DNGRGIPTD+H  EG SAAEV++T LHAGGKF+  SYK
Sbjct: 60  ALAGHCNDVSVTINTDGSITVVDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNDSYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WL L I+R+G I+  ++  G   +PL VTG      GT++TF
Sbjct: 120 VSGGLHGVGVSVVNALSKWLDLEIRRDGKIWRQTYHRGEPQSPLEVTG-TTRRRGTKITF 178

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +P  +IF   ++++D L  RLREL+FLN+ V+I + D+R  + +    FY+GGI +FV Y
Sbjct: 179 MPDEEIFETTEYSFDVLSQRLRELAFLNAGVRIKINDER-ADGKSHDFFYEGGINSFVEY 237

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+R K PL Q PI  +G +  + ++++M++ND Y E +  F NNI   +GGTHL+G ++A
Sbjct: 238 LNRAKTPLHQKPIYFKGEKGGVEMEVSMQYNDTYDEKIFSFANNINTHEGGTHLAGFKAA 297

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y   +  +K  K ++ GDD REG T V+S+K+P P+F  QTK KL +SEV+  
Sbjct: 298 LTRTMNTYAAGNNLTKNAKVAISGDDLREGMTCVISVKIPQPQFEGQTKTKLGNSEVKGY 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES +N+ L+ +LEE+P  AK I++K ++A+  R+AAR+ARDLTRRKG LD+  LPGKLA
Sbjct: 358 VESLLNEKLAVYLEENPQVAKRILEKSIEAARAREAARKARDLTRRKGALDLGGLPGKLA 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP   EL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSSQEI 
Sbjct: 418 DCQEKDPALCELYLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARFDKMLSSQEIR 477

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITA+GTGIG+D FDI KLRY +II+MTDADVDG+HI TLLLTFF+R M  LI  G LY
Sbjct: 478 TLITAMGTGIGKDDFDIAKLRYGRIIVMTDADVDGSHILTLLLTFFYRNMQELIERGHLY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY + RGK   Y+++E +L+ +L+ +   E I              +   I   +
Sbjct: 538 IAQPPLYKVKRGKKELYLRNEAALQTFLLEEGAEELILSMEKGDRSYIGKQIIPVIRQLI 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           +   L +          +   +I        ++   +       N +  + +  +  +  
Sbjct: 598 EWRALFEKVVKKGIPADLLDLLIRAGVRPGIEEVAGL---ESYLNTMQGLIDDCDYQYQA 654

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK-- 713
                   +  + R V +   L    + S   +     + ++ E     L+ +    K  
Sbjct: 655 EDERVTFRIGNM-RSVIDNQTL--GVLASHEYELLVESNRKVAELMAGGLARLEENGKGL 711

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           ++ +    LL       +KG+++QRYKGLGEMN  QLWETT+NP+ R LL+VKI D  +A
Sbjct: 712 LETSRHEELLSYFLDYAKKGLAIQRYKGLGEMNPDQLWETTMNPENRILLQVKIEDVVEA 771

Query: 774 DDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           D +F+ LMGD+VEPRREFI+ N+L    LD+
Sbjct: 772 DQIFTVLMGDQVEPRREFIELNALNVVNLDV 802


>gi|71899732|ref|ZP_00681884.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
 gi|71730527|gb|EAO32606.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
          Length = 814

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/816 (49%), Positives = 534/816 (65%), Gaps = 15/816 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M++    S       YD+  I +L+GLDAV+KRP MYIGD    +GLHHM++EV+DN++D
Sbjct: 1   MTEKQNTSLLSNGGIYDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVD 60

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+  SY
Sbjct: 61  EALAGHADSILVKIHIDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL          GT + 
Sbjct: 121 KVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYFLGEPQYPLKQL-EVSAKRGTTLR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R     Y+GGI +FV 
Sbjct: 180 FKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+
Sbjct: 239 HLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRA 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQTKEKLVSS+V+ 
Sbjct: 299 ALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKP 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKGVLDIA LPGKL
Sbjct: 359 AVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+
Sbjct: 419 ADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEV 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           GTLITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +
Sbjct: 479 GTLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHV 538

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI  PPLY + +GKS  Y+KD+ +L  YL N ++     L  + +  I    L   +   
Sbjct: 539 YIGLPPLYKLKQGKSELYLKDDIALNVYLANSAVEGAQLLPAEGEPPIEGLALEKLLITY 598

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV-SLASKLANRLNFIAEKSEK-- 651
           +     I      +D   +E  +     +    Q  +       L   LN  +  + +  
Sbjct: 599 IAAKDTIVRHSHRYDSRLLEALLEFTPLDSTCFQSYSDSEHLQSLMALLNQSSLGAPRYI 658

Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
               +    +++ +L  R   G +   VL+ S++ +   +     +  +         ++
Sbjct: 659 LKMQFPDEQHSATLLATRYHMGEELTQVLQLSALETGELRPLYEAAKLLHGLIRKGAKIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  I         +    +KG  +QR+KGLGEMN  QLW+TT+NPDTR LL+V I 
Sbjct: 719 RGTKSQSIECFGDAQAWLLEEAKKGRQIQRFKGLGEMNPEQLWDTTVNPDTRRLLQVCIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D   AD +FS LMGD VEPRR FI+ N+L    LDI
Sbjct: 779 DGIAADQIFSTLMGDVVEPRRGFIENNALKVTRLDI 814


>gi|28197950|ref|NP_778264.1| DNA gyrase subunit B [Xylella fastidiosa Temecula1]
 gi|182680577|ref|YP_001828737.1| DNA gyrase subunit B [Xylella fastidiosa M23]
 gi|28056010|gb|AAO27913.1| DNA gyrase subunit B [Xylella fastidiosa Temecula1]
 gi|182630687|gb|ACB91463.1| DNA gyrase, B subunit [Xylella fastidiosa M23]
 gi|307579031|gb|ADN63000.1| DNA gyrase subunit B [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 814

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/816 (49%), Positives = 534/816 (65%), Gaps = 15/816 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M++    S       YD+  I +L+GLDAV+KRP MYIGD    +GLHHM++EV+DN++D
Sbjct: 1   MTEKQNTSLLSNGGIYDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVD 60

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+  SY
Sbjct: 61  EALAGHADSILVKIHIDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL          GT + 
Sbjct: 121 KVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL-EVSAKRGTTLR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R     Y+GGI +FV 
Sbjct: 180 FKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I +D A++W D Y E + CFTNNIPQKDGGTHL+G R+
Sbjct: 239 HLAQLKTPLHPNVISVTGEHNGIVVDAALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRA 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQTKEKLVSS+V+ 
Sbjct: 299 ALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKP 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKGVLDIA LPGKL
Sbjct: 359 AVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+
Sbjct: 419 ADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEV 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           GTLITALGTGIG+D ++ +KLRYH++IIMTDADVDG+HIRTLLLTFF+RQMP LI  G +
Sbjct: 479 GTLITALGTGIGKDEYNPDKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHI 538

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI  PPLY + +GKS  Y+KD+ +L  YL N ++     L  + +  I    L   +   
Sbjct: 539 YIGLPPLYKLKQGKSELYLKDDIALNVYLANSAVEGAQLLPAEGEPPIEGLALEKLLITY 598

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV-SLASKLANRLNFIAEKSEK-- 651
           +     I      +D   +E  +     +    Q  +       L   LN  +  + +  
Sbjct: 599 IAAKDTIVRHSHRYDSRLLEALLEFTPLDSTCFQSYSDSEHLQSLMALLNQSSLGAPRYI 658

Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
               +    +++ +L  R   G +   VL+ S++ +   +     +  +         ++
Sbjct: 659 LKMQFPDEQHSAALLATRYHMGEELTQVLQLSALETGELRPLYEAAKLLHGLIRNGAKIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  I         +    +KG  +QR+KGLGEMN  QLW+TT+NPDTR LL+V I 
Sbjct: 719 RGTKSQSIECFGDAQAWLLEEAKKGRQIQRFKGLGEMNPEQLWDTTVNPDTRRLLQVCIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D   AD +FS LMGD VEPRR FI+ N+L    LDI
Sbjct: 779 DGIAADQIFSTLMGDVVEPRRGFIENNALKVTRLDI 814


>gi|15836610|ref|NP_297298.1| DNA gyrase subunit B [Xylella fastidiosa 9a5c]
 gi|9104765|gb|AAF82818.1|AE003855_5 DNA gyrase subunit B [Xylella fastidiosa 9a5c]
          Length = 814

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/816 (49%), Positives = 536/816 (65%), Gaps = 15/816 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M++    S       YD+  I +L+GLDAV+KRP MYIGD    +GLHHM++EV+DN++D
Sbjct: 1   MTEKQNTSLLSNGGIYDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVD 60

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+  SY
Sbjct: 61  EALAGHADSILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL   G +    GT + 
Sbjct: 121 KVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQLGVSA-KRGTTLR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P+ +IFS  +F+Y+ L  RLRELSFLNS +Q+SLID+R  E R     Y+GGI +FV 
Sbjct: 180 FKPAKEIFSDVEFHYENLAKRLRELSFLNSGLQVSLIDER-GEGRRDDFHYEGGIRSFVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+
Sbjct: 239 HLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRA 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQTKEKLVSS+V+ 
Sbjct: 299 ALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKP 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKGVLDIA LPGKL
Sbjct: 359 AVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+
Sbjct: 419 ADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEV 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           GTLITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +
Sbjct: 479 GTLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHI 538

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI  PPLY + +GKS  Y+KD+ +L  YL N ++     L  + +  I    L   +   
Sbjct: 539 YIGLPPLYKLKQGKSELYLKDDIALNVYLANSAVEGAQLLPAEGEPPIEGLALEKLLITY 598

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV-SLASKLANRLNFIAEKSEK-- 651
           +     I      +D   +E  +     +    Q  +       L   LN  +  + +  
Sbjct: 599 IAAKDTIARHSHRYDSRLLEALLEFTPLDSTCFQSYSDSEHLQSLMALLNQSSLGAPRYI 658

Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
               +    + + +L  R   G +   VL+ S++ +   +     +  +         ++
Sbjct: 659 LKMQFPDEQHPAALLATRYHMGEELTQVLQLSALETGELRPLYEAAKLLHGLIRNGAKIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  I         +    +KG  +QR+KGLGEMN  QLW+TT+NPDTR LL+V I 
Sbjct: 719 RGTKSQSIECFGDAQAWLLEDAKKGRQIQRFKGLGEMNPEQLWDTTVNPDTRRLLQVCIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D   AD +FS LMGD VEPRR FI+ N+L    LDI
Sbjct: 779 DGIAADQIFSTLMGDVVEPRRGFIENNALKVTRLDI 814


>gi|71905645|ref|YP_283232.1| DNA gyrase subunit B [Dechloromonas aromatica RCB]
 gi|71845266|gb|AAZ44762.1| DNA gyrase subunit B [Dechloromonas aromatica RCB]
          Length = 834

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/832 (46%), Positives = 533/832 (64%), Gaps = 34/832 (4%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS   +  + +Y   SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L 
Sbjct: 8   MSSPQDAGSPAYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALA 67

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           G+ + I VT++ D S +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ S
Sbjct: 68  GHCNDIIVTIHTDNSISVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNS 126

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVV 161
           YKVSGGLHGVGVS VNALS +L+L I+R+G  + M F  G+              +P+ +
Sbjct: 127 YKVSGGLHGVGVSCVNALSKFLRLTIRRDGKKHFMEFCRGVPVDRSIEVRNGLEVSPMKI 186

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G      GTEV FL   +IF   +F+Y+ L  RLRELSFLN+ V I L+D+R+ +    
Sbjct: 187 LGDTE-KRGTEVHFLADEEIFGHVEFHYEILAKRLRELSFLNNGVSIKLVDQRTGKE--E 243

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----------RDNISIDLAMRWNDGYHE 271
              + GG+++FV Y++R K  L  S     G              I +++AM+WND Y E
Sbjct: 244 LFAFAGGVQSFVEYINRTKSVLHPSIFYSAGEAKVGQGAADTGIIIGVEVAMQWNDSYQE 303

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            VLCFTNNIPQ DGGTHL+GLR+A+TR I  Y++++  +KK K  + GDD REG   VLS
Sbjct: 304 QVLCFTNNIPQSDGGTHLTGLRAAMTRVINKYIDENEIAKKAKVDIAGDDMREGLACVLS 363

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +KMPDP+F+SQTK KLVSSE R+ VE  V   L+ +L E P++AK+I  K+++AS  R+A
Sbjct: 364 VKMPDPKFASQTKMKLVSSEARAAVEEVVAQKLADFLLERPVDAKMICGKIVEASRAREA 423

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           ARRAR++TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 424 ARRAREMTRRKGVLDGVGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAIL 483

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+ARFDK++SS++I TLITALGTGIG+D F++ KLRYH+IIIMTDADVDGA
Sbjct: 484 PLRGKVLNVEKARFDKLISSEQIVTLITALGTGIGKDDFNVEKLRYHRIIIMTDADVDGA 543

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLT  +RQMP LI  G++YI +PPLY +  GK+ +Y+KD++    +L+N +L E 
Sbjct: 544 HIRTLLLTLLYRQMPELIDRGYVYIAQPPLYKVKHGKTERYLKDDQEYHQFLLNMALDEA 603

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
           +         I+   L       L  + +I       +   ++  V   +    S +E  
Sbjct: 604 VLTPRADAEGITGPALEGLARSWLATEAVIDRLSHLINPEVLQSIVRHNIAIDLSSEENA 663

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR 691
            + A ++A  +        K +        + V+R+  G  +  +++   + S      R
Sbjct: 664 RASAERIAGFIPAGTRMVPK-FDDIQERWILRVERMHHGNLKVGLIDEDLLLSGDFTQLR 722

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLW 751
             +  + + +    ++     K  +T     +  + +   +GI+ QRYKGLGEMN  QLW
Sbjct: 723 RTAETLADMFGAGATMARGEKKQVVTNFADAMKWLLNEVERGIAKQRYKGLGEMNPEQLW 782

Query: 752 ETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           ETT++P  R LLRV+I DA  AD++F+ LMG++VEPRR FI+ N+L + +DI
Sbjct: 783 ETTMDPKVRRLLRVQIDDAIAADEIFTTLMGEDVEPRRAFIETNALSARVDI 834


>gi|71275531|ref|ZP_00651817.1| DNA gyrase, B subunit [Xylella fastidiosa Dixon]
 gi|71900178|ref|ZP_00682318.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
 gi|170729255|ref|YP_001774688.1| DNA gyrase subunit B [Xylella fastidiosa M12]
 gi|71163831|gb|EAO13547.1| DNA gyrase, B subunit [Xylella fastidiosa Dixon]
 gi|71730067|gb|EAO32158.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
 gi|167964048|gb|ACA11058.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa M12]
          Length = 814

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/816 (49%), Positives = 535/816 (65%), Gaps = 15/816 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M++    S       YD+  I +L+GLDAV+KRP MYIGD    +GLHHM++EV+DN++D
Sbjct: 1   MTEKQNTSLLSNGGIYDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVD 60

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+  SY
Sbjct: 61  EALAGHADSILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL          GT + 
Sbjct: 121 KVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTTLR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R     Y+GGI +FV 
Sbjct: 180 FKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+
Sbjct: 239 HLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRA 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQTKEKLVSS+V+ 
Sbjct: 299 ALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKP 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKGVLDIA LPGKL
Sbjct: 359 AVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+
Sbjct: 419 ADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEV 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           GTLITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +
Sbjct: 479 GTLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHI 538

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI  PPLY + +GKS  Y+KD+ +L  YL N ++     L  + +  I    L   +   
Sbjct: 539 YIGLPPLYKLKQGKSELYLKDDIALNVYLANSAVEGAQLLPAEGEPPIEGLALEKLLITY 598

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV-SLASKLANRLNFIAEKSEK-- 651
           +     I      +D   +E  +     +    Q  +       L   LN  +  + +  
Sbjct: 599 IAAKDTIVRHSHRYDSRLLEALLEFTPLDSTCFQSYSDSEHLQSLMALLNQSSLGAPRYI 658

Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
               +    +++ +L  R   G +   VL+ S++ +   +     +  +         ++
Sbjct: 659 LKMQFPDEQHSAALLATRYHMGEELTQVLQLSALETGELRPLYEAAKLLHGLIRNGAKIV 718

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  I         +    +KG  +QR+KGLGEMN  QLW+TT+NPDTR LL+V I 
Sbjct: 719 RGTKSQSIECFGDAQAWLLEEAKKGRQIQRFKGLGEMNPEQLWDTTVNPDTRRLLQVCIE 778

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D   AD +FS LMGD VEPRR FI+ N+L    LDI
Sbjct: 779 DGIAADQIFSTLMGDVVEPRRGFIENNALKVTRLDI 814


>gi|309784252|ref|ZP_07678891.1| DNA gyrase, B subunit [Shigella dysenteriae 1617]
 gi|308927759|gb|EFP73227.1| DNA gyrase, B subunit [Shigella dysenteriae 1617]
          Length = 762

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/764 (49%), Positives = 513/764 (67%), Gaps = 12/764 (1%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGK
Sbjct: 2   VDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK 61

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     
Sbjct: 62  FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-K 120

Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+G
Sbjct: 121 TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEG 178

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 179 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 238

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KL
Sbjct: 239 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 298

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+
Sbjct: 299 VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 358

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 359 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 418

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           MLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP 
Sbjct: 419 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 478

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           ++  G +YI +PPLY + +GK  QY+KD+E+++ Y I+ +L         S   ++   L
Sbjct: 479 IVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEAL 538

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFI 645
              + +     K+I      + K  +++ +          SD++      + L + LN  
Sbjct: 539 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDK 598

Query: 646 AE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
            +     K +   +   N  + +V+    GV   + L+   I     +       ++   
Sbjct: 599 EQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGL 658

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
                 +     +  +      LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R
Sbjct: 659 LEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESR 718

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
            +LRV + DA  AD LF+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 719 RMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 762


>gi|329113486|ref|ZP_08242267.1| DNA gyrase subunit B [Acetobacter pomorum DM001]
 gi|326697311|gb|EGE48971.1| DNA gyrase subunit B [Acetobacter pomorum DM001]
          Length = 851

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/817 (52%), Positives = 568/817 (69%), Gaps = 19/817 (2%)

Query: 1   MSD------NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M+D      +  +  YDA SI +LKGLDAV+KRP MYIGDTD  SGLHHM +E++DNA+D
Sbjct: 40  MTDLSQPTPSAVSEEYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVD 99

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+  G+A    VT N DGS +V DNGRGIPTD+H EEGISAAEV++TRLHAGGKFNQ SY
Sbjct: 100 EAQAGFASRCIVTFNADGSVSVRDNGRGIPTDMHTEEGISAAEVVLTRLHAGGKFNQNSY 159

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG +VVNALS W+++RI R G  + + F +G  D PL V G +   +GTEVT
Sbjct: 160 KVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHFIRFQHGERDAPLEVVGPSSEPSGTEVT 219

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PSS+ F   DF++  L+ RLREL+FLNS ++I L D R    RE   FY+GG+EAFV 
Sbjct: 220 FKPSSETFPKTDFDFTILERRLRELAFLNSGLEIVLRDARVTPMREEKFFYEGGLEAFVD 279

Query: 235 YLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           +LDR +  L        ++   + I ++ A+ WND +HE +LCFTNNIPQ+DGG HL+G 
Sbjct: 280 WLDRSRTSLFAPPITGSLENPDNGIKVEFALTWNDSFHETMLCFTNNIPQRDGGAHLAGF 339

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR +  Y E    +KKD  S+ G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 340 RQALTRVVGKYAES--IAKKDALSLQGEDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 397

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + VV +   D +S W E HP EAKI+V KVLDA+  R+AAR+AR+LTRRKGVLD++SLPG
Sbjct: 398 QPVVHAAAADIISHWFETHPKEAKIVVSKVLDAASAREAARKARELTRRKGVLDVSSLPG 457

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC  RDP K+ELF+VEGDSAGG+AKQGR R  QAILPL+GKILNVERARFD+ML S 
Sbjct: 458 KLADCQARDPAKAELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSA 517

Query: 473 EIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           EIGTLITALGTGIG+       F I KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP 
Sbjct: 518 EIGTLITALGTGIGRGEPEQGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPE 577

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G+LYI +PPLY   RG    Y+KD+ +LE YL+N++L+    ++ D K V+S  +L
Sbjct: 578 LIERGYLYIAQPPLYRAKRGNEETYLKDDAALEQYLLNKALNNASFVYTD-KRVVSAEEL 636

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
              +    +  + I           IEQ  ++G    +   E+       L  RL+  + 
Sbjct: 637 AADLPFIRQAAQAINRLSNRIPSWIIEQVALAGALTTDI--ELLQQRMPALQQRLDAASA 694

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
           ++EKSW    +   + + R  RGV E + ++ + + S  +++  + +NR+++++   ++L
Sbjct: 695 ENEKSWKAVASADGVELARNVRGVGEVYRIDPTMLASNDARWLTMQANRLQKDFAEGVAL 754

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
             +  + +++GP  L   + + GR+G+++ R+KGLGEMN +QLWETTL+P  R+LL+V++
Sbjct: 755 KNDTTEHQLSGPADLYTRLLAQGRRGLTINRFKGLGEMNDAQLWETTLDPAMRTLLQVRV 814

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            D  +A D+F+ LMGD VEPRR+FI  N+L    LD+
Sbjct: 815 GDVEEAGDVFTTLMGDIVEPRRDFIVGNALKVANLDV 851


>gi|126640119|ref|YP_001083103.1| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 784

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/786 (50%), Positives = 519/786 (66%), Gaps = 16/786 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  +GLHHM++EV+DNAIDE+L G+ D I VT++ D S +VSDNGRGIPTD+H 
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHP 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L L I R G I+E  
Sbjct: 61  EEGVSAAEVILTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQE 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G    PL V G   ++TGT V F PS++ FS   FN + L  RLRELSFLN+ V+I 
Sbjct: 121 YHHGDPQYPLRVIGET-DNTGTTVRFWPSAETFSQTIFNVEILARRLRELSFLNAGVRIV 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+R     E    Y+GG+  FV Y++  K  L +       + + I++++A++WND Y
Sbjct: 180 LRDERI--NLEHVYDYEGGLSEFVKYINEGKNHLNEIFHFTADADNGIAVEVALQWNDSY 237

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            ENV CFTNNIPQKDGGTHL+G R+ALTR +  Y+E     KK+K +V GDD REG T++
Sbjct: 238 QENVRCFTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAI 297

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP+FSSQTKEKLVSSEV+  VE  +N   SA+L E+P  AK I  K++DA+  R
Sbjct: 298 ISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARAR 357

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           DAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QA
Sbjct: 358 DAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQA 417

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVERARFDKM+SSQE+GTLITALG GIG++ ++ +KLRYHKIIIMTDADVD
Sbjct: 418 ILPLKGKILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVD 477

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G+HIRTLLLTFFFRQMP L+  G +YI +PPLY + +GK  QY+KD ++LE YLI+ ++ 
Sbjct: 478 GSHIRTLLLTFFFRQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYLISNAID 537

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
           E           I+   L   I D     K ++     +  + ++  +    F  + + +
Sbjct: 538 ELALHISADAPAITGEALAKVIQDYQVSQKSLQRLTLRYPASLLDALLEVDAFKADQNHD 597

Query: 630 IN--VSLASK-----------LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
                  A +           L   +     + E +      +    V      +   ++
Sbjct: 598 QAYVQQWADQVREAVQRLQPSLRPEITLETFERENAQGEKSAHYWPRVTVYIHNLPHAYL 657

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISM 736
           L+   + S         S    +       L     +I++     +   I    R+G+ +
Sbjct: 658 LDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQKGDRRIQVANFHQVWQHILQDSRRGMMI 717

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P+ R++L+V I DA +AD +FS LMGD+VEPRR FI+EN+
Sbjct: 718 QRYKGLGEMNAEQLWETTMDPENRNMLQVTIDDAIEADRMFSCLMGDDVEPRRAFIEENA 777

Query: 797 LPSALD 802
           L + +D
Sbjct: 778 LNADID 783


>gi|304319868|ref|YP_003853511.1| DNA gyrase subunit B [Parvularcula bermudensis HTCC2503]
 gi|303298771|gb|ADM08370.1| DNA gyrase subunit B [Parvularcula bermudensis HTCC2503]
          Length = 770

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/775 (57%), Positives = 569/775 (73%), Gaps = 6/775 (0%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  SGLHHM+YEV+DNAIDE+L GY D +TV LN DGS +VSDNGRGIPT++H 
Sbjct: 1   MYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDTVTVALNADGSVSVSDNGRGIPTEIHT 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
            EG+SAA+VIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+L I R G  ++M 
Sbjct: 61  GEGVSAAQVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELVIYRGGKRHQMR 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F NG   + L V G   + +GTEVTF PS+DIF++ DF+++TL+ RLREL+FLNS V+I 
Sbjct: 121 FENGDPVDDLAVMGET-DKSGTEVTFHPSADIFAITDFDFETLEKRLRELAFLNSGVKIV 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+R  +P    ++Y+GG+EAFV YLD  K  +M +PI     +D + +D+AM WND Y
Sbjct: 180 LTDRRHVDPVVEELYYEGGLEAFVRYLDNAKSAIMGAPISFSTEKDGLVVDVAMWWNDSY 239

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           HE VLCFTNNIPQ+DGGTHL+G R+ALTR + SY + S   KK+K S+ GDD REG T V
Sbjct: 240 HEKVLCFTNNIPQRDGGTHLAGFRAALTRVVNSYAQSSGLLKKEKVSLSGDDAREGLTCV 299

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           LS+K+PDP+FSSQTK+KLVSSEVR VVES V + L+ W EE+P + K + +KV++A+  R
Sbjct: 300 LSVKVPDPKFSSQTKDKLVSSEVRPVVESAVGEALNIWFEENPGDGKRVAQKVVEAAAAR 359

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           +AARRAR+LTRRKG LDI+SLPGKLADC ERDP KSELFLVEGDSAGGSAKQ R+RENQA
Sbjct: 360 EAARRARELTRRKGALDISSLPGKLADCQERDPAKSELFLVEGDSAGGSAKQARNRENQA 419

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVERARFDKMLSSQE+GTLITALGTGIG+D F+I+KLRYHKI+IMTDADVD
Sbjct: 420 ILPLKGKILNVERARFDKMLSSQEVGTLITALGTGIGKDDFNIDKLRYHKIVIMTDADVD 479

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           GAHIRTLLLTFF+RQMP ++  G+LYI +PPLY ++RGKS QY+ DE +L ++L ++ + 
Sbjct: 480 GAHIRTLLLTFFYRQMPEIVRRGYLYIAQPPLYKVSRGKSEQYLIDESALAEHLYSEGMD 539

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
                   S    +  D    +  A    + +  F     +  I Q  +SG+        
Sbjct: 540 GAKL-RLGSGEERAGQDFAAVVTAARASMQAVAAFPDRFPRKVIVQTALSGLM---GGTP 595

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSK 688
           +  +L  KL +RL+  +E+ E+ W  +I   D +++ R  RGV+E+  L G+ + S  ++
Sbjct: 596 LTEALTQKLIDRLDMTSEEYERGWAVTIEGGDGLVISRTLRGVEERHHLTGNILQSGDAR 655

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
                   +   +     L+   D++ + GP  LLD I   G+KGIS+QRYKGLGEMN  
Sbjct: 656 RLANAIAPLVPVFEQPAFLLRKDDELVVFGPGRLLDAIREAGQKGISVQRYKGLGEMNPE 715

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           QLWETTL+ + R LLRV+I +A QADD+FSRLMGD VEPRREFIQEN+L + LDI
Sbjct: 716 QLWETTLDANARQLLRVEIEEADQADDIFSRLMGDVVEPRREFIQENALAAELDI 770


>gi|311103227|ref|YP_003976080.1| DNA gyrase subunit B [Achromobacter xylosoxidans A8]
 gi|310757916|gb|ADP13365.1| DNA gyrase, B subunit [Achromobacter xylosoxidans A8]
          Length = 815

 Score =  858 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/820 (46%), Positives = 535/820 (65%), Gaps = 24/820 (2%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD      +NS Y ADSI++LKGL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+
Sbjct: 1   MSDQQNTTPENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114
           L GY D I VT++ D S +V+DNGRGIPTD+HK  E   SAAE++MT LHAGGKF+Q SY
Sbjct: 61  LAGYCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFHRSAAEIVMTELHAGGKFDQNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVS VNALS WL+L I+R G +++M F  G    PL VTG   +  GTEV 
Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGEVHQMEFRQGERVAPLAVTG-TTDKRGTEVR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL    IF+  +++Y+ L  RLRELSFLN+ V+I LID+R  +       + GG++ FV 
Sbjct: 180 FLADPIIFNNIEYHYEILSKRLRELSFLNNGVKIRLIDQRQGKE--ENFAFSGGVKGFVE 237

Query: 235 YLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           Y++R K  L  +   +          + +++AM+WND Y E+VLCFTNNIPQ+DGG+HL+
Sbjct: 238 YINRSKTVLHPNVFSVTTESSAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSHLT 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR I  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 298 GLRAAMTRIINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  V   L +WL E+P++AK +  K+++A+  R+AAR+AR++TRRK VL+ A L
Sbjct: 358 EVRPAVEEAVARTLESWLLENPIDAKALCAKIVEAARAREAARKAREMTRRKSVLEGAGL 417

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++
Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TLITALGT IG   F+++KLRYH++IIMTDADVDGAHIRTLLLT  +RQMP L+ 
Sbjct: 478 SEQIATLITALGTSIG-PDFNVDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVQ 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI +PPLY +  G+  +Y+KD++    +++  +L +   +      +I  ++L + 
Sbjct: 537 RGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQLALKDAEII--SGGNIIRGDELSDL 594

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS---LASKLANRLNFIAE 647
               +  D +I       D   +         N ES +    S   LA  + + ++    
Sbjct: 595 ARQYVAADGVIARLSRVFDVGALSAMAEGVEINLESAESTADSARRLADAMRDPVSGNGV 654

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS----KYKRIFSNRIEENYLT 703
           +    +  +     + V+R+  G     +++   +         K  + FS ++    L 
Sbjct: 655 EVVPQFDEATERHRLSVQRMHHGNVRVSIIDADFVNGSDYAVLSKAAKSFSGKVSARSLA 714

Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
                    +  ++     +  + S   + IS QRYKGLGEMN  QLWETT++P  R LL
Sbjct: 715 ARGEGEKRKEQTVSDFREAMQWLRSEADRSISKQRYKGLGEMNPEQLWETTMDPKVRRLL 774

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           RV+I DA  AD++F+ LMGD+VEPRR FI+ ++L +  +D
Sbjct: 775 RVQIEDAIAADEVFTTLMGDDVEPRRNFIETHALSAGNID 814


>gi|118578453|ref|YP_899703.1| DNA gyrase subunit B [Pelobacter propionicus DSM 2379]
 gi|118501163|gb|ABK97645.1| DNA gyrase subunit B [Pelobacter propionicus DSM 2379]
          Length = 802

 Score =  858 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/813 (46%), Positives = 522/813 (64%), Gaps = 21/813 (2%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+           Y AD+I++L+GL AV+KRP+MYIG T G  GLHH++YE++DN+IDE
Sbjct: 1   MSEHNNVTQSNVEEYSADNIKVLEGLAAVRKRPAMYIGSTSGA-GLHHLVYEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+ D I+VT+N+DGS TV DNGRGIPTD+H  EG SAAEV++T LHAGGKF+  SYK
Sbjct: 60  ALAGHCDNISVTINVDGSVTVIDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNDSYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WL+L IKR+G I+  S+  G    PL  TG A    GT+VTF
Sbjct: 120 VSGGLHGVGVSVVNALSKWLELEIKRDGKIFRQSYRRGDPVAPLAETG-ATRKRGTKVTF 178

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +P  +IF   +F++D L  RLREL+FLN+ V+I + D R         +Y+GGI +FV Y
Sbjct: 179 MPDEEIFETTEFSFDVLSQRLRELAFLNAGVRIGISDMRVDNKSHE-FYYEGGINSFVEY 237

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+R+K  +   PI  +G +  +  +++M++ND + E +  F NNI   +GGTHL G ++A
Sbjct: 238 LNRNKIAVHPKPIYFRGEKGGVETEVSMQYNDSFDEKIFSFANNINTHEGGTHLVGFKAA 297

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y   +   KK+K S+ GDD REG T V+S+K+P P+F  QTK KL +SEV+  
Sbjct: 298 LTRTMNAYAAANNLLKKEKVSISGDDLREGLTCVISVKIPQPQFEGQTKTKLGNSEVKGY 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES +N+ L+ +LEE+P  AK I++K ++A+  R+AARRAR+  RRKG LD+  LPGKLA
Sbjct: 358 VESMINEKLAQFLEENPQVAKRILEKSIEAARAREAARRARETVRRKGALDLGGLPGKLA 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E++P+  EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE++RFDKM+SSQEI 
Sbjct: 418 DCQEKNPEHCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKSRFDKMISSQEIR 477

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D FDI+KLRY +II+MTDADVDG+HI TLLLTFF+R M  LI  G LY
Sbjct: 478 TLITALGTGIGKDDFDISKLRYGRIIVMTDADVDGSHILTLLLTFFYRNMNELIQRGHLY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY + RGK   Y+++E +L+++L+ +   + +              +   I   +
Sbjct: 538 IAQPPLYKVKRGKKEMYLRNEAALQNFLLEEGAEDLVLRLEKGDRKYLGKQIIPVIRQFI 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
               +            +   ++        +    +   S++   L  + E +E   + 
Sbjct: 598 DNRAIFDKVVKKGISQELLSIIVRS------NVPAGLEELSQVEPYLEAMKELAENGEYQ 651

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                 I      R + +  +L    + S   +       R+ E      + I      K
Sbjct: 652 VEEERIIFYIGNIRAIIDHQIL--GVLASHEYELLVENHRRVVETMADGRAYIEQEAGGK 709

Query: 716 I----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           +    +    LL       +KG+ +QRYKGLGEMN  QLWETT+NP+ R LL+VKI DA 
Sbjct: 710 VLLETSNHEELLVYFLENAKKGLGIQRYKGLGEMNPDQLWETTMNPENRVLLQVKIEDAV 769

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           ++D++F+ LMGD+V+PRREFI+ N+L    LDI
Sbjct: 770 ESDEIFTILMGDQVDPRREFIETNALNVVNLDI 802


>gi|77917622|ref|YP_355437.1| DNA gyrase subunit B [Pelobacter carbinolicus DSM 2380]
 gi|77543705|gb|ABA87267.1| DNA gyrase subunit B [Pelobacter carbinolicus DSM 2380]
          Length = 795

 Score =  858 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/812 (48%), Positives = 534/812 (65%), Gaps = 26/812 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D      Y A SI++L+GL AV+KRP+MYIG T G  GLHH++YEV+DN+IDESL G 
Sbjct: 1   MTD-TNQREYGAGSIKVLEGLSAVRKRPAMYIGST-GVMGLHHLVYEVVDNSIDESLAGV 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V L++DGS TV DNGRGIP D+H  +  SAAEV+MT LHAGGKF+  SYKVSGGL
Sbjct: 59  CDEISVILHLDGSVTVEDNGRGIPVDMHPTQNKSAAEVVMTVLHAGGKFDSDSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R G IY   ++ G+ D PL   G      GT +TF P  +
Sbjct: 119 HGVGVSVVNALSKKLELEIRRNGRIYRQGYVRGVPDAPLREEGDTT-KRGTRITFWPDPE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF + DF+++TL  RLREL+FLN  V I ++D+RS +  +    Y+GGI +FVSYL+R K
Sbjct: 178 IFEITDFSFETLSKRLRELAFLNGGVHIHIVDERSEKRHD--FHYEGGIISFVSYLNRAK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL   PI   G R+ + I++A ++NDGY E +  F NNI   +GGTHL G ++ALTR +
Sbjct: 236 TPLHAEPIFFSGEREGVQIEVAFQYNDGYDEKIFTFANNINTHEGGTHLVGFKAALTRTM 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY   +   K  K S+ GDD REG  +V+S+K+PDP+F  QTK KL +SE++  VE+ +
Sbjct: 296 NSYATANNLLKNVKASISGDDLREGMAAVISVKVPDPQFEGQTKTKLGNSEIKGYVETLI 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ ++EE+P  AK I++K ++A+  R+AAR+ARDLTRRKGVLD  +LPGKLADC E+
Sbjct: 356 NEKLATFMEENPNVAKRILEKGIEAARAREAARKARDLTRRKGVLDSLALPGKLADCQEK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E++LVEGDSAGGSAKQGR R NQAILPL+GKILNVE+ARFDKML+S EI TLITA
Sbjct: 416 DPALCEIYLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLTSNEIRTLITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG+  FDI+KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G+LYI +PP
Sbjct: 476 MGTGIGKGDFDISKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYLYIAQPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY   RGK   Y+KDE +L +YL+++ +         +  V+    +   + + ++ + +
Sbjct: 536 LYKAKRGKRELYLKDESALTEYLLDEGVDGVTLELKANDKVVRGKQIIPTLRNIIEYNHI 595

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                     + +    + G      +   ++   + L  RL   A  ++  +       
Sbjct: 596 FSKLVLKGVNSEVLNIFVEGRIRNGFEDMADL---APLVQRLKQAAPHAD--FQLFHEPD 650

Query: 661 DILVK------RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI--CNGD 712
            IL        RI R V E        + S           +I+E++    ++I     +
Sbjct: 651 RILFTLGNVRARIDRQVLE-------ILSSHEYHLLLQAWAKIQESHANERAVISMEGKE 703

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           + ++     LLD   +  RKG  +QRYKGLGEMN  QLWETT++P+ R LL+V++ DA +
Sbjct: 704 ESEVNNCQELLDFFQARARKGQYIQRYKGLGEMNPDQLWETTMDPEKRILLQVQVEDAVE 763

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A+++F+ LMGD+VEPRREFI+ N+L    LDI
Sbjct: 764 ANEIFTVLMGDQVEPRREFIENNALNVSNLDI 795


>gi|148284766|ref|YP_001248856.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Boryong]
 gi|146740205|emb|CAM80488.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Boryong]
          Length = 807

 Score =  858 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/804 (51%), Positives = 558/804 (69%), Gaps = 4/804 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  N ++  Y+ADSI+IL+GL+AV+ RP MYIGD    SGLH +IYEVLDN+ DESL G 
Sbjct: 7   MPTNTKSDQYNADSIKILRGLEAVRVRPGMYIGDISNGSGLHQLIYEVLDNSTDESLAGD 66

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V LN +GS TV DNGRGIP D+H+EEG+SAA+VIMT+LHAGGKF+Q +YKVSGGL
Sbjct: 67  CNKIEVILNKNGSVTVRDNGRGIPVDIHQEEGVSAAQVIMTQLHAGGKFDQNAYKVSGGL 126

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+LRI +    + M F NG   NPL + G A N  GTE+TF PS  
Sbjct: 127 HGVGVSVVNALSDWLELRIWKNNQEHFMRFNNGEPQNPLSIVGEAPNKQGTEITFYPSIA 186

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  +F++  L+HRLREL+FLNSSV+ SL D+RS E +++  FY GG+E++V Y+D+ K
Sbjct: 187 IFTSVEFSFSELEHRLRELAFLNSSVEFSLTDERSSEVKDVKFFYTGGVESYVQYIDKAK 246

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +    Q      +++LAM+WND ++EN++CFTNNI Q+DGG+HL G RSA+TR I
Sbjct: 247 AALHSTISFHQTDSHGATVELAMQWNDSFYENIVCFTNNIRQRDGGSHLQGYRSAVTRAI 306

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           T Y +      K+  +  GDD REG + VLS+K+PDP+F+SQTK+KLVS E R++VE  V
Sbjct: 307 TKYTKDH--FPKNNINYNGDDIREGLSCVLSLKLPDPKFASQTKDKLVSPEARAIVEGIV 364

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  WLE  P E K I+ K+ ++++ R+AAR+AR+LTRRK  L +A+LPGKLADC +R
Sbjct: 365 YEKLVEWLEHRPSEGKKIIAKITESALAREAARKARELTRRKSALGVANLPGKLADCQQR 424

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
            P+KSELF+VEGDSAGG+AKQGR+R+ QAILPLRGK+LNVERARFDKML S +IGTLITA
Sbjct: 425 APEKSELFIVEGDSAGGTAKQGRNRKFQAILPLRGKVLNVERARFDKMLQSDQIGTLITA 484

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG D F I+K+RYHK+IIMTDADVDG+HIR LLLTFF+R MP++I  G+LYI +PP
Sbjct: 485 LGTGIGSDDFAIDKIRYHKVIIMTDADVDGSHIRALLLTFFYRYMPTVIEKGYLYIAQPP 544

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I RG +  Y+K++++L DYL+  ++  EI++   S   IS   L   +    K+  +
Sbjct: 545 LYKIKRGANELYLKNDQALYDYLLKIAID-EIDVIKSSGDRISNAKLTTIVASIRKLTAV 603

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           +       +K   E   I+   + ++   I     S L  +        + +W   +++ 
Sbjct: 604 LNKVGNKLNKYIAEVLAITKNLSADTFNSIYQDKLSSLIQKTLPTQTLDKTNWQVEVHDD 663

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            +      RG+++   L  S + S            + E +   L+L    ++I I+ P 
Sbjct: 664 YMQFYCFVRGIKKAQSLFKSQLESPEFVSLIRLGQELSELFENRLTLKHKSEEINISLPS 723

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LLD + +IG+ G+S+QR+KGLGEMN+ QLWETTL+P+ R+LL+VKITD  +A+++FS L
Sbjct: 724 ALLDKLLAIGKHGMSIQRFKGLGEMNSDQLWETTLDPENRTLLQVKITDFDEAEEVFSTL 783

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           M + VEPRREFIQ N+L    LD+
Sbjct: 784 MSNIVEPRREFIQANALNVNNLDV 807


>gi|188590798|ref|YP_001795398.1| DNA gyrase subunit b [Cupriavidus taiwanensis LMG 19424]
 gi|170937692|emb|CAP62676.1| DNA gyrase, subunit B (type II topoisomerase) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 841

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/845 (46%), Positives = 528/845 (62%), Gaps = 46/845 (5%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++     Q ++Y A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTEQQNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
            GY   I VT++ D S ++ DNGRGIP     D   E   SAAE+ MT LHAGGKFNQ S
Sbjct: 61  AGYCTEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------D 156
           YKVSGGLHGVGVS VNALS WL+L ++R+G ++ + F  G +                  
Sbjct: 121 YKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKGEVQNRIIETVDGPDGQPVEV 180

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +P+ +TG A +  GTEV FL   +IF+  +F+Y+ L  R+RELSFLN+ V I L D+R+ 
Sbjct: 181 SPMKITG-ATDKRGTEVHFLADEEIFTNVEFHYEVLSKRIRELSFLNNGVHIKLTDQRTG 239

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG++ FV Y++R K  L  +       +D I++++AM+WNDGY+E VLCF
Sbjct: 240 KE--EDFAFSGGVKGFVEYINRAKTTLHPNIFYANAEKDGIAVEVAMQWNDGYNEQVLCF 297

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K    GDD REG   VLS+K+P+
Sbjct: 298 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAKVETSGDDMREGLACVLSVKVPE 357

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR  VE  V+  L+ +L E P +AK I  K++DA+  R+AAR+AR
Sbjct: 358 PKFSSQTKDKLVSSEVRLPVEELVSKALTDFLLETPADAKTICGKIVDAARAREAARKAR 417

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGV+D   LPGKLADC E+DP +SELFLVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 418 EMTRRKGVMDGMGLPGKLADCQEKDPAQSELFLVEGDSAGGSAKQGRDRKFQAILPLKGK 477

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSSQE+ TLITALGTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 478 ILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTL 537

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LLTFF+RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  YL+  ++ +   +  
Sbjct: 538 LLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKLAMEKASLVRP 597

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE-------SDQE 629
           D    IS + L          + +I       D   +         + +       S   
Sbjct: 598 DGSE-ISGDALTELARQYQLTEGVIGRLSRVVDTDALRAIADGVTLDLDSAAAAEASAVA 656

Query: 630 INVSLASKLANRL------NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683
           +   LA   A  L      +         +    +   +++ R   G      L+   + 
Sbjct: 657 LKAKLAEMHAKTLIGAAVNDDGTADVYAQFDEKTDKHRLMIARRHHGNVRLSHLDADFVH 716

Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRY 739
                     +   +        +            +      +  + +   +G+S QRY
Sbjct: 717 GADYAALSNAAKTFQGLTPEGTKVQRGEGDKLRDQTVNDFHGAMQWLLAEAERGVSRQRY 776

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QL+ETTL+   R LL+V+I DA  AD +F+ LMGDEVEPRR FI+ N+L +
Sbjct: 777 KGLGEMNPEQLFETTLDVTQRRLLKVQIEDAIAADQIFTTLMGDEVEPRRNFIESNALVA 836

Query: 800 -ALDI 803
             +D+
Sbjct: 837 RNIDV 841


>gi|113866034|ref|YP_724523.1| DNA gyrase subunit B [Ralstonia eutropha H16]
 gi|113524810|emb|CAJ91155.1| DNA gyrase subunit B [Ralstonia eutropha H16]
          Length = 841

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/845 (45%), Positives = 530/845 (62%), Gaps = 46/845 (5%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++     Q ++Y A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTEQQNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
            GY   I VT++ D S ++ DNGRGIP     D   E   SAAE+ MT LHAGGKFNQ S
Sbjct: 61  AGYCTEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------D 156
           YKVSGGLHGVGVS VNALS WL+L ++R+G ++ + F  G +                  
Sbjct: 121 YKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKGDVQNRIVETVTGPDGQPVEV 180

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +P+ + G A +  GTEV FL   +IF+  +F+Y+ L  R+RELSFLN+ V I L+D+R+ 
Sbjct: 181 SPMKIIG-ATDKRGTEVHFLADEEIFTNVEFHYEILSKRIRELSFLNNGVHIKLVDQRTG 239

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG++ FV Y++R K  L  +       +D I++++AM+WNDGY+E VLCF
Sbjct: 240 KE--EDFAFSGGVKGFVEYINRSKSVLHPNIFYANTEKDGIAVEVAMQWNDGYNEQVLCF 297

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K    GDD REG + VLS+K+P+
Sbjct: 298 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKAKVETTGDDMREGLSCVLSVKVPE 357

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K++DA+  R+AAR+AR
Sbjct: 358 PKFSSQTKDKLVSSEVRLPVEELVGKALNDFLLETPGDAKIICGKIVDAARAREAARKAR 417

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG++D   LPGKLADC E+DP  SELFLVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 418 EMTRRKGLMDGMGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRKFQAILPLKGK 477

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSSQE+ TLITALGTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 478 ILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTL 537

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LLTFF+RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  YL+  ++ + + +  
Sbjct: 538 LLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKLAMEKAVLVRP 597

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE-------SDQE 629
           D    I+ + L          + +I       D   +         + +       S   
Sbjct: 598 DGSE-INGDALTELARQYQLTEGVISRLSRVVDTDALRAIADGVPLDLDSAAAAEASAVA 656

Query: 630 INVSLASKLANRL------NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683
           +   LA   A  L      +         +    +   +++ R   G      L+   + 
Sbjct: 657 LKAKLAEMHAKTLIGAAVNDDGTADVYAQFDEKTDKHRLMIARRHHGNVRLSHLDADFVH 716

Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNGDK----IKITGPCSLLDTIFSIGRKGISMQRY 739
                     +   +        +     +      +      +  + +   +G+S QRY
Sbjct: 717 GADYAALSNAAKTFQGLTPEGTKVQRGEGEKLRDQTVNDFHGAMQWLLAEAERGVSRQRY 776

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QL+ETTL+   R LL+V+I DA  AD +F+ LMGDEVEPRR FI+ N+L +
Sbjct: 777 KGLGEMNPEQLFETTLDVTQRRLLKVQIEDAIAADQIFTTLMGDEVEPRRNFIESNALVA 836

Query: 800 -ALDI 803
             +D+
Sbjct: 837 RNIDV 841


>gi|145588192|ref|YP_001154789.1| DNA gyrase, B subunit [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046598|gb|ABP33225.1| DNA gyrase subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 832

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/836 (47%), Positives = 530/836 (63%), Gaps = 37/836 (4%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++  +    Y A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L G
Sbjct: 1   MTEEKKVVEQYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYK 115
           Y   ITV +  D S ++ DNGRG+PT +      E   SAAE++MT LHAGGKF+Q SYK
Sbjct: 61  YCSEITVVIQTDNSISIVDNGRGVPTGIKYDDKHEPKRSAAEIVMTELHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF------------INGILDNPLVVTG 163
           VSGGLHGVGVS VNALS WLKL I+R+G  + M F             +G++ +P+ VTG
Sbjct: 121 VSGGLHGVGVSCVNALSKWLKLTIRRDGKAHYMEFARGVIQNRNVVDEDGVMVSPITVTG 180

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                +GTEV FL    IF   +F+Y+ L  R+RELSFLN+ V I LID+R+ +      
Sbjct: 181 DTE-LSGTEVHFLADETIFGNVEFHYEILVKRIRELSFLNNGVHIKLIDQRTGQE--EDF 237

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTN 278
            + GG++ FV Y+++ K  L  +    +G R       I+ +++M+WND + E VLCFTN
Sbjct: 238 AFSGGVKGFVEYINQTKNVLHPNIFYAEGVRPSDLGGQITAEVSMQWNDSFSEQVLCFTN 297

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR I  Y++++  +KK K  + GDD REG   VLS+K+P+P+
Sbjct: 298 NIPQRDGGTHLTGLRAAMTRVINKYIDENEVAKKAKVEISGDDMREGLACVLSVKVPEPK 357

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR  VE  V + LSA+L+E P +AKI+  K++DA+  R+AAR+ARD+
Sbjct: 358 FSSQTKDKLVSSEVRGPVEEIVAEALSAYLQERPADAKILCGKIVDAARAREAARKARDM 417

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKGVLD   LPGKLADC E+DP KSELF+VEGDSAGGSAKQGR R  QAILPL+GKIL
Sbjct: 418 TRRKGVLDGLGLPGKLADCQEKDPTKSELFIVEGDSAGGSAKQGRDRRFQAILPLKGKIL 477

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NVE+ARFDKML+SQE+ TLIT LGTGIG + +  +KLRYH+IIIMTDADVDG+HIRTLLL
Sbjct: 478 NVEKARFDKMLASQEVVTLITVLGTGIGIEEYKADKLRYHRIIIMTDADVDGSHIRTLLL 537

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TFF+RQMP LI  G +YI +PPLY +  GK+ QY+KD+  L   L+  +L          
Sbjct: 538 TFFYRQMPELIERGHIYIAQPPLYKVKFGKNEQYIKDDNELNQLLLKIALETASLQTPT- 596

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS---LA 635
             VI    L         I  ++       D+  +         N ++++  N S   L 
Sbjct: 597 GEVIEGESLNELAKHYQVIQSIVDRLSRTIDEDALRAIASGTQLNLDTEKSANESADRLR 656

Query: 636 SKLANRLNFIAEKSEKSWHGS--INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
             LA+ LN +A   E             +L+ R   G  +   +    +     +     
Sbjct: 657 QALADSLNPLALPPEIIVQKEDRTERFRLLLSRRIHGNLKLSTINSDFVHGDDYQSLANA 716

Query: 694 SNRIEENYLTILSLICNG-----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
           +  +    L    +          +  I    +    + S   + +S QRYKGLGEMN S
Sbjct: 717 AAVLSGKVLPGTKVRRGDPDKNQKEQTINDFRAAFSWLLSEAERVLSRQRYKGLGEMNPS 776

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           QLWETT++  +R+LL+VKI DA  AD +F+ LMGDEVEPRR FI++N+L +  LD+
Sbjct: 777 QLWETTMDASSRTLLQVKIEDAIAADQVFTTLMGDEVEPRRAFIEKNALIARNLDV 832


>gi|124265196|ref|YP_001019200.1| DNA gyrase subunit B [Methylibium petroleiphilum PM1]
 gi|124257971|gb|ABM92965.1| DNA gyrase subunit B [Methylibium petroleiphilum PM1]
          Length = 851

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/825 (46%), Positives = 524/825 (63%), Gaps = 34/825 (4%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + +Y   SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I 
Sbjct: 34  ASVAYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 93

Query: 66  VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           VT++ D S +V+DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGL
Sbjct: 94  VTIHSDNSISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 152

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGND 168
           HGVGVS VNALS WL+L ++REG ++ M F  G               +P+ + G     
Sbjct: 153 HGVGVSCVNALSKWLRLTVRREGKVHLMEFRRGFPQDRVLEMRNGFEVSPMAIVGDTE-K 211

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEV FLP  +IF+  DF+YD L  RLRELSFLN+ V+I L+D+R+ +       Y GG
Sbjct: 212 RGTEVHFLPDEEIFTNIDFHYDVLAKRLRELSFLNNGVKIRLVDERNAKE--DNFAYAGG 269

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++ FV +++  KK L  +     G +      NI +++AM+WNDGY E VLCFTNNIPQ+
Sbjct: 270 VKGFVEFINTGKKVLHGNIFHALGDKMSEFNTNIGVEVAMQWNDGYSEQVLCFTNNIPQR 329

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+GLR+A+TR I  Y+E +  +KK K  + GDD REG   V+S+K+P+P+FSSQT
Sbjct: 330 DGGTHLTGLRAAMTRVINKYIEDNELAKKAKVEIAGDDMREGLACVVSVKVPEPKFSSQT 389

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR  VE  V   L+ +L E+P++AKII  K+++A+  R+AAR+AR++TRRKG
Sbjct: 390 KDKLVSSEVRGPVEEIVGKLLTDYLLENPIDAKIICGKIVEAARAREAARKAREMTRRKG 449

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVERA
Sbjct: 450 VLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVERA 509

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           RF+K+L+S EI TLITALGT IG+D ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+R
Sbjct: 510 RFEKLLTSNEILTLITALGTSIGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYR 569

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           QMP L+  G +YI +PPLY +  GK  QY+KD   L+ YL+  +L +          V+ 
Sbjct: 570 QMPELVERGHIYIAQPPLYKVKLGKEEQYLKDGHELDAYLLRVALRDARLETGVGGTVLL 629

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            + L +     +  + +        D   +       V N ++  +   S A+  A   +
Sbjct: 630 GDALESLARQYVLANNVTARLANWMDVEALRAIADGLVLNLDTLADAETSAAALKAALHD 689

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
                    +   ++   + + R   G  +  V+    +     +         +    T
Sbjct: 690 A---DVSAEFDARLDKHLLRISRRHHGNTKSSVITADFVHGADYEALSTAGLAFKGLVST 746

Query: 704 ILSLICNGDKI----KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
              +     +     K+      +  +       +  QRYKGLGEMN  QLWETT++P  
Sbjct: 747 EAVVKKGEGEKQKDAKVADFREAMAWLMQQAENSVGRQRYKGLGEMNPEQLWETTMDPTV 806

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L  + +D+
Sbjct: 807 RRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAANIDV 851


>gi|189183732|ref|YP_001937517.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Ikeda]
 gi|189180503|dbj|BAG40283.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Ikeda]
          Length = 807

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/804 (51%), Positives = 560/804 (69%), Gaps = 4/804 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  N +   Y+ADSI+IL+GL+AV+ RP MYIGD    SGLH +IYEVLDN+ DESL G 
Sbjct: 7   MPTNTKLDQYNADSIKILRGLEAVRVRPGMYIGDISNGSGLHQLIYEVLDNSTDESLAGG 66

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VTLN +GS TV DNGRGIP D+H+EEG+SAA+VIMT+LHAGGKF+Q +YKVSGGL
Sbjct: 67  CNKIEVTLNKNGSVTVRDNGRGIPVDIHQEEGVSAAQVIMTQLHAGGKFDQNAYKVSGGL 126

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+LRI +    + M F NG   NPL + G A N  GTE+TF PS  
Sbjct: 127 HGVGVSVVNALSDWLELRIWKNNQEHFMRFNNGEPQNPLSIVGEAPNKQGTEITFYPSIA 186

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  +F++  L+HRLREL+FLNSSV+ SL D+RS E +++  FY GG+E++V Y+D+ K
Sbjct: 187 IFTSVEFSFSELEHRLRELAFLNSSVEFSLTDERSSEVKDVKFFYTGGVESYVQYIDKAK 246

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +    Q      +++LAM+WND ++EN++CFTNNI Q+DGG+HL G RSA+TR I
Sbjct: 247 AALHSTISFHQTDSHGATLELAMQWNDSFYENIVCFTNNIRQRDGGSHLQGYRSAVTRAI 306

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           T Y +      K+  +  GDD REG + VLS+K+PDP+F+SQTK+KLVS E R++VE  V
Sbjct: 307 TKYTKDH--FPKNNINYNGDDIREGLSCVLSLKLPDPKFASQTKDKLVSPEARAIVEGIV 364

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  WLE  P E K I+ K+ ++++ R+AAR+AR+LTRRK  L +A+LPGKLADC +R
Sbjct: 365 YEKLVEWLEHRPSEGKKIIAKITESALAREAARKARELTRRKSALGVANLPGKLADCQQR 424

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
            P+KSELF+VEGDSAGG+AKQGR+R+ QAILPLRGK+LNVERARFDKML S +IGTLITA
Sbjct: 425 APEKSELFIVEGDSAGGTAKQGRNRKFQAILPLRGKVLNVERARFDKMLQSDQIGTLITA 484

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG D F I+K+RYHK++IMTDADVDG+HIR LLLTFF+R MP++I  G+LYI +PP
Sbjct: 485 LGTGIGSDDFAIDKIRYHKVVIMTDADVDGSHIRALLLTFFYRYMPTVIEKGYLYIAQPP 544

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I RG +  Y+K++++L DYL+  ++  EI++   S   IS  +L   +    K+  +
Sbjct: 545 LYKIKRGANELYLKNDQALYDYLLKIAID-EIDVIKSSGDRISNAELTTIVASIRKLTVV 603

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           +       +K   E   I+   + ++   I     S L  ++       + +W   +++ 
Sbjct: 604 LNKVGNKLNKYIAEVLAITRNLSADTFNSIYQDKLSSLIQQMLPTQTLDKTNWQVEVHDD 663

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            +      RG+++   L  S + S            + E +   L+L    ++I I+ P 
Sbjct: 664 YMQFYCFVRGIKKAQSLFKSQLESPEFVSLIRLGQELSELFENRLTLKHKSEEINISLPS 723

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LLD + +IG+ G+S+QR+KGLGEMN+ QLWETTL+P+ R+LL+VKITD  +A+++FS L
Sbjct: 724 ALLDKLLAIGKHGMSIQRFKGLGEMNSDQLWETTLDPENRTLLQVKITDFDEAEEVFSTL 783

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           M + VEPRREFIQ N+L    LD+
Sbjct: 784 MSNIVEPRREFIQANALNVNNLDV 807


>gi|332286197|ref|YP_004418108.1| DNA gyrase subunit B [Pusillimonas sp. T7-7]
 gi|330430150|gb|AEC21484.1| DNA gyrase subunit B [Pusillimonas sp. T7-7]
          Length = 816

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/821 (47%), Positives = 525/821 (63%), Gaps = 23/821 (2%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MSD   N   + Y ADSI++LKGL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+L
Sbjct: 1   MSDQTTNVAAAGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYK 115
            GY D I VT++ D S +VSDNGRGIPTD+HK  E G SAAE++MT LHAGGKF+  SYK
Sbjct: 61  AGYCDDIVVTIHADNSISVSDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDHNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS WL+L I R G ++EM F  G    PL VTG A + +GT V F
Sbjct: 121 VSGGLHGVGVSCVNALSQWLRLSISRNGQLHEMEFRRGERVEPLAVTG-AIDASGTRVQF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L  + IF   +++Y+ L  RLRELSFLN+ V+I LID+R+ +       + GG++ FV Y
Sbjct: 180 LADAQIFENIEYSYEILAKRLRELSFLNNGVKIRLIDERNDKE--ENFAFLGGVKGFVEY 237

Query: 236 LDRHKKPLMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           ++R K  L  +   +          I +D+AM+WND Y E VLCFTNNIPQ+DGGTHL+G
Sbjct: 238 INRAKTVLHANVFSVSTESVVGDATIGVDVAMQWNDSYSETVLCFTNNIPQRDGGTHLTG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR +  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 298 LRAAMTRVLNKYIADNELAKKAKVDTTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR  VE  V   L  WL E+P +AK +  KV++A+  RDAAR+AR++TRRK VL+ A LP
Sbjct: 358 VRPAVEEAVARTLETWLLENPNDAKALCNKVIEAARARDAARKAREMTRRKSVLEGAGLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++S
Sbjct: 418 GKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIAS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TLITALGT IG   F+I+KLRYH+IIIMTDADVDGAHIRTLLLT  +RQMP L+  
Sbjct: 478 EQITTLITALGTSIG-PDFNIDKLRYHRIIIMTDADVDGAHIRTLLLTLLYRQMPELVER 536

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY +  G+  +Y+KD+     +++  +L +      +    IS + L    
Sbjct: 537 GHIYIAQPPLYKVKVGREERYLKDDAEEAQFMLQVALKDAALFVKEGADPISGDALAELA 596

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              +  D +I       D   +         N  +D +   + A +L   ++  A  +  
Sbjct: 597 RQYILADSVINRLSRTFDIEALSAMAEGVEINL-TDADQAAASAQRLFKAIDDPAVPNGV 655

Query: 652 SWHGSINNSD----ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
           + +   N       +++ R+  G     + + + +           +            +
Sbjct: 656 TVNVEANEEGDAWRLVLNRMHHGNVRVTIFDRAFVRGADYAVLSKAAQTFTGLTGPGAQI 715

Query: 708 ICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
           +        +  I+     +  + S   + IS QRYKGLGEMN  QLWETT++P  R LL
Sbjct: 716 VRGEGDRRKEKHISDFREAMQFLRSEADRSISKQRYKGLGEMNPQQLWETTMDPSVRRLL 775

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           RV+I DA  AD++F+ LMGD VEPRR FI+ ++L +  +D+
Sbjct: 776 RVQIEDAIAADEIFTTLMGDNVEPRRAFIETHALQAGNIDV 816


>gi|319790160|ref|YP_004151793.1| DNA gyrase, B subunit [Thermovibrio ammonificans HB-1]
 gi|317114662|gb|ADU97152.1| DNA gyrase, B subunit [Thermovibrio ammonificans HB-1]
          Length = 804

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/810 (46%), Positives = 523/810 (64%), Gaps = 13/810 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+      +YDA +I++L+GL+AV+KRP MYIGDT G  GLHH+++EV+DN++DE+L GY
Sbjct: 1   MAQK--QDNYDASAIKVLEGLEAVRKRPGMYIGDT-GVYGLHHLVFEVVDNSVDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV+DNGRGIP D+H E G  AAE+++T LHAGGKF +K+YK SGGL
Sbjct: 58  CTEIEVTIHPDNSITVADNGRGIPVDIHPEYGKPAAEIVLTVLHAGGKFEKKAYKYSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WLKL I R+G +Y+  +  G         G   N  GT +TF P  +
Sbjct: 118 HGVGVSVVNALSEWLKLEIHRDGKVYKQVYERGKPVTQFTCVG-TSNKRGTIITFKPDPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF V +F++D L +RLREL+FLN  ++I+L D+R   P+    +Y+GGI  FV  ++  K
Sbjct: 177 IFEVTEFSWDILANRLRELAFLNKGLKITLTDERVDPPKREVFYYEGGIVEFVKKINEKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL   PI I G +D+I +++A+++N  Y E +  F NNI  ++GGTH+SG RSALTR I
Sbjct: 237 DPLFPEPIYITGEKDDILVEVALQYNSTYTEQIFSFVNNINTREGGTHVSGFRSALTRAI 296

Query: 301 TSYVEKSFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           T ++E+     K+ K S+ GDD REG  +V+S+K+P+P+F  QTK KL +SEVR VV S 
Sbjct: 297 TKFIEEHNLLPKNSKISITGDDTREGLVAVISVKVPNPQFEGQTKAKLGNSEVRPVVASV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L  +L E P   + I +KV+ A+  R+AA+RAR+LTRRK  L+  SLPGKLADCSE
Sbjct: 357 VYEKLWNYLTERPDIGRKIAEKVITAARAREAAKRARELTRRKSALEEFSLPGKLADCSE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP+K+ELFLVEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR +K+LS+ EI T+IT
Sbjct: 417 RDPQKTELFLVEGDSAGGSAKQGRDRRFQAILPLKGKIINVEKARIEKVLSNDEIKTIIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTG+G++ FDI+KLRY+KIIIMTDADVDGAHIRTLLLTFFFRQ P ++  G LYI +P
Sbjct: 477 ALGTGVGKN-FDISKLRYNKIIIMTDADVDGAHIRTLLLTFFFRQFPEIVERGHLYIAQP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK   Y+K ++ LE  ++  +L     L       + + D +  +    K+ +
Sbjct: 536 PLYRLKKGKKEMYIKSDKELESVILEFALDSVKLLDPQGNP-LKEEDAKEVVKKLAKLQE 594

Query: 600 LIKDFYPNHDKTFIEQAVISGV-FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
           LI       D   I   + +   +     +E    L  +L   L    +  E     S +
Sbjct: 595 LIAILSKRRDPQIINLLIRAQADYRELYTREGVEGLIERLRKLLPPELKGIEFKPVESPD 654

Query: 659 N---SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI-EENYLTILSLICNGDKI 714
                 I    + + ++++  ++ + + S   +  R     I  +           G ++
Sbjct: 655 ECAFKIIATVPLDKYLKKEVTIDENLLISDLYRQARKLKGEIRAKLGEPPYKAQKKGKEL 714

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                  L   +   GR+GI +QRYKGLGEMN  QLWETT+NP+ R+LL+V + DA  AD
Sbjct: 715 TFKTLEELYTFLIDSGREGIYIQRYKGLGEMNPEQLWETTMNPENRTLLKVTVEDAVSAD 774

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ++F+ LMGD+VEPRREFIQ+ +     LD+
Sbjct: 775 EVFTVLMGDKVEPRREFIQKFAKEVRNLDV 804


>gi|293602697|ref|ZP_06685138.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Achromobacter
           piechaudii ATCC 43553]
 gi|292818888|gb|EFF77928.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Achromobacter
           piechaudii ATCC 43553]
          Length = 815

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/820 (46%), Positives = 533/820 (65%), Gaps = 24/820 (2%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD      +NS Y ADSI++LKGL+AV+KRP MYIGDT   +GLHHM++EV+DNAIDE+
Sbjct: 1   MSDQQNTTSENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114
           L G+ D I VT++ D S +V+DNGRGIPTD+HK  E   SAAE++MT LHAGGKF+Q SY
Sbjct: 61  LAGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFHRSAAEIVMTELHAGGKFDQNSY 120

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVS VNALS WL+L I+R G +++M F  G    PL VTG   +  GTEV 
Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGARVAPLAVTG-TTDMRGTEVR 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL    IF+  +++Y+ L  RLRELSFLN+ V+I L+D+R  +       + GG++ FV 
Sbjct: 180 FLADPIIFNNIEYHYEILSKRLRELSFLNNGVKIRLVDQRQGKE--ENFAFSGGVKGFVE 237

Query: 235 YLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           Y++R K  L  +   +         ++ +++AM+WND Y E+VLCFTNNIPQ+DGG+HL+
Sbjct: 238 YINRAKTVLHPNVFSVSTESAAGGVSVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSHLT 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR I  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 298 GLRAAMTRIINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  V   L +WL E+P +AK +  K+++A+  R+AAR+AR++TRRK VL+ A L
Sbjct: 358 EVRPAVEEAVARTLESWLLENPNDAKALCNKIVEAARAREAARKAREMTRRKSVLEGAGL 417

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++
Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TLITALGT IG   F++ KLRYH++IIMTDADVDGAHIRTLLLT  +RQMP L+ 
Sbjct: 478 SEQIATLITALGTSIG-PDFNVEKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVQ 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI +PPLY +  G+  +Y+KD++    +++  +L +   +      +I   +L + 
Sbjct: 537 RGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQLALKDAEII--SGGNIIRGEELTDL 594

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ---EINVSLASKLANRLNFIAE 647
               +  D +I       D   +         N E+ +   +    LA  + + ++    
Sbjct: 595 ASQYVAADGVIARLSKVFDVGALSAMAEGVEINLETAESTADSAKRLADAMRDPVSGNGV 654

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR-IEENYLTILS 706
                +  +     + V+R+  G     +++   I           +   + +     L+
Sbjct: 655 DVVPQFDEATERHRLSVQRMHHGNVRVSIIDADFINGTDYTILSKAAKSFLGKVGPRSLA 714

Query: 707 LICNGDKIK---ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
               GDK K   ++     +  + S   + IS QRYKGLGEMN  QLWETT++P  R LL
Sbjct: 715 ARGEGDKRKEQVVSDFREAMQWLRSEADRSISKQRYKGLGEMNPEQLWETTMDPKVRRLL 774

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           RV+I DA  AD++F+ LMGD+VEPRR FI+ N+L +  +D
Sbjct: 775 RVQIEDAIAADEVFTTLMGDDVEPRRAFIERNALSAGNID 814


>gi|152980048|ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille]
 gi|151280125|gb|ABR88535.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille]
          Length = 832

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/827 (46%), Positives = 524/827 (63%), Gaps = 32/827 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q++ Y A SIQIL+GL+AV+KRP MYIGDT   +GLHH ++EVLDN+IDESL G+   
Sbjct: 11  QPQSAQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSIDESLAGHCTE 70

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           I VT++ D S +++DNGRGIPT +      E   SAAE++MT LHAGGKF+Q SYKVSGG
Sbjct: 71  IHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGG 130

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGN 167
           LHGVGVS VN LS  LKL I+R+G  +EM F+ G+              +P+ V G   +
Sbjct: 131 LHGVGVSCVNGLSKLLKLTIRRDGKKHEMEFVRGVPQNREVETIDGMVVSPIKVVGDT-D 189

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
             GTEV F    +IF+  +F+YD L  R+RELSFLN+ V I L D+R+ +       ++G
Sbjct: 190 KRGTEVHFWADEEIFTNVEFHYDILAKRIRELSFLNNGVHIKLSDQRTGKE--EDFAFEG 247

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           G   FV Y+++ K  L  +  +  G R      NI++D++M+WND Y+E VLCFTNNIPQ
Sbjct: 248 GTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNITVDVSMQWNDAYNEQVLCFTNNIPQ 307

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+GLR+A+TR I  Y+++   +KK K  + GDD REG T VLS+K+P+P+FSSQ
Sbjct: 308 RDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEISGDDMREGLTCVLSVKVPEPKFSSQ 367

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEVR  VE  V   L+ +L+E P +AKII  K+++A+  R+AAR+ARDLTRRK
Sbjct: 368 TKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAARKARDLTRRK 427

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           GV+D   L  KLADC E+DP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+
Sbjct: 428 GVMDGLGLSAKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEK 487

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           ARF+KML+S++I TLI  LGT IG D F+I KLRYH+IIIMTDADVDGAHIRTLLLT  +
Sbjct: 488 ARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDADVDGAHIRTLLLTLLY 547

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           RQMP L+  G +YI +PPLY +  GK  +Y+KD+     Y++  +L++   +  +    I
Sbjct: 548 RQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVYMMQIALNDAALIPSEGAQPI 607

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           + + L   +      + +I       D   +  A+++GV    S  E   + A +L   +
Sbjct: 608 AGDALAELVRQYNMANAIINRLTRAVDGAALT-AIMTGVTLDLSSVEAAQASAQRLEQGI 666

Query: 643 NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
           N  A               + + R+  G  +   ++   +           +   +   +
Sbjct: 667 NEPAVTVTVKSDELSGKHTLRINRMYHGNVKASSIDSDFVTGPDYTVLAAAAATFK-GLI 725

Query: 703 TILSLICNG-----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNP 757
              +L+  G         I+     ++ + S   + +  QRYKGLGEMN  QLWETT++P
Sbjct: 726 GPGALVQRGAGEKAKVSAISDFHQAMNWLRSEAERNVGKQRYKGLGEMNPEQLWETTMDP 785

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             R LL+V+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +DI
Sbjct: 786 AVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALSAGNIDI 832


>gi|258593678|emb|CBE70019.1| DNA gyrase subunit B [NC10 bacterium 'Dutch sediment']
          Length = 826

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/805 (45%), Positives = 512/805 (63%), Gaps = 16/805 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YDA  I+IL+GL+AV+KRP+MYIG T G  GLHH++YEV+DN++DE+L GY D + VT++
Sbjct: 27  YDAAQIRILEGLEAVRKRPAMYIGST-GFDGLHHLVYEVVDNSVDEALAGYCDQVDVTIH 85

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D S +V DNGRGIP D+H++ G  A EV+MT LHAGGKF+  +YKVSGGLHGVG+SVVN
Sbjct: 86  SDNSVSVLDNGRGIPVDIHEQTGRPAVEVVMTTLHAGGKFDNSAYKVSGGLHGVGLSVVN 145

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           AL+  L++ I R+G  Y   +  G     L   G A   TGT VTF+P S+IF  + F+ 
Sbjct: 146 ALAEQLEVEIWRDGKRYLQQYERGKPTGDLEEVGKA-RKTGTRVTFIPDSEIFEDRTFSL 204

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           DTL +RLREL+FLN  ++I L D+R  E R    +Y GGI +FV  L+ +K  L   PI 
Sbjct: 205 DTLSNRLRELAFLNKGLRIRLTDERINEAR--EFYYTGGIRSFVELLNENKVVLHPKPIH 262

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+  RD   +++A+++NDGY E V  F NNI   DGGTHL G RSALTR I SY      
Sbjct: 263 IEVQRDPTVVEVAIQYNDGYGETVFSFANNINTHDGGTHLIGFRSALTRTINSYAASHDL 322

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K  K +V GDD REG T+V+S+K+P+P+F  QTK +L + +++ +VE+ VN+ L+ +LE
Sbjct: 323 LKNLKATVTGDDIREGLTAVISVKLPNPQFEGQTKARLNNPDMKGLVETIVNEKLAEYLE 382

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P+  + IV+K  +A+  R+AAR+A++L RRKG LD   LPGKLADCSE+DP   EL++
Sbjct: 383 ENPVIGRRIVEKATEAARAREAARKAKELARRKGPLDGDGLPGKLADCSEKDPALCELYI 442

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILN ERAR DKMLSS EI  LI+ALG GI    
Sbjct: 443 VEGDSAGGSAKQGRDRRFQAILPLRGKILNTERARADKMLSSAEIRVLISALGAGI-DPE 501

Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549
           FD+ +LRYH+II+MTDADVDG HIRTLLLTFFFR +  ++  G LYI +PPLY I RGK+
Sbjct: 502 FDLGRLRYHRIILMTDADVDGEHIRTLLLTFFFRHLREIVEGGHLYIAQPPLYKIKRGKA 561

Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
            +Y+K++ ++E++L+  +         D +   +   L   +   +     ++       
Sbjct: 562 ERYLKNDRAMEEFLLETAGETLRVDGGDRETTWTGQRLVGILRKLMVWQSCLRTMERRGR 621

Query: 610 KTFIEQA------VISGVFNCESDQEINVS-LASKLANRLNFIAE-KSEKSWHGSINNSD 661
              +  A      V+ G    E      ++ L   L +R + +   +    W        
Sbjct: 622 HPGVVAALAQAGGVLHGTLKDEDKTYRLLARLLETLRSRADRLGPAEGRAEWDEEQEAYR 681

Query: 662 ILVKRIARGVQEQFV--LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
           +++   + G  ++ V  ++ + + S   +     +  +         +  +GD       
Sbjct: 682 LILSFGSNGKGQRGVTTIDQTLVGSPEYRELEGAAAALSGLGEPPFKIAADGDITPAESW 741

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             LLD   ++ RKG+++QRYKGLGEMN  QLW+TT+NP++R+LLRV + DA  A+ +F+ 
Sbjct: 742 SDLLDKSMTLARKGLTIQRYKGLGEMNPEQLWQTTMNPESRTLLRVAVEDAVAAEQIFTT 801

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGD+VEPRR FI+ ++L +  LDI
Sbjct: 802 LMGDQVEPRRLFIERHALEASNLDI 826


>gi|73539709|ref|YP_294229.1| DNA gyrase subunit B [Ralstonia eutropha JMP134]
 gi|72117122|gb|AAZ59385.1| DNA gyrase subunit B [Ralstonia eutropha JMP134]
          Length = 841

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/845 (45%), Positives = 529/845 (62%), Gaps = 46/845 (5%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++     Q ++Y A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTEQQNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
            GY   ITVT++ D S ++ DNGRGIP     D   E   SAAE+ MT LHAGGKFNQ S
Sbjct: 61  AGYCTEITVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------D 156
           YKVSGGLHGVGVS VNALS WL+L ++R+G ++ + F  G +                  
Sbjct: 121 YKVSGGLHGVGVSCVNALSKWLRLTVRRDGKVHLIEFAKGDVQNRIIETVNGPDGQPVEV 180

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +P+ + G   +  GTEV FL   +IF+  +F+Y+ L  R+RELSFLN+ V I L+D+R+ 
Sbjct: 181 SPMKIIGDT-DKRGTEVHFLADEEIFTNVEFHYEILSKRIRELSFLNNGVHIKLVDQRTG 239

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG++ FV Y++R K  L  +       +D I+++++M+WNDGY+E VLCF
Sbjct: 240 KE--EDFAFSGGVKGFVEYINRAKTVLHPNIFYANAEKDGIAVEVSMQWNDGYNEQVLCF 297

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K    GDD REG   VLS+K+P+
Sbjct: 298 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAKVETSGDDMREGLACVLSVKVPE 357

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR  VE  V+  L+ +L E P +AK I  K++DA+  R+AAR+AR
Sbjct: 358 PKFSSQTKDKLVSSEVRLPVEELVSKALNDFLLETPNDAKTICGKIVDAARAREAARKAR 417

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGV+D   LPGKLADC E+DP +SELFLVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 418 EMTRRKGVMDGMGLPGKLADCQEKDPAQSELFLVEGDSAGGSAKQGRDRKFQAILPLKGK 477

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSSQE+ TLITALGTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 478 ILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTL 537

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LLTFF+RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  YL+  ++ + + +  
Sbjct: 538 LLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKLAMEKAVLVRP 597

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE-------SDQE 629
           D    I+ + L          + +I       D   +         + +       S   
Sbjct: 598 DGTE-INGDALTELARQYQLTEGVIGRLSRIVDTDALRAIADGVTLDLDSAPAAEASAVA 656

Query: 630 INVSLASKLANRL------NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683
           +   LA   A  L      +         +    +   +++ R   G      ++   + 
Sbjct: 657 LKTKLAEMHAKTLLGAAVNDDGTADVYAQFDEKTDKHRLMIARRHHGNVRLSHMDADFVH 716

Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRY 739
                     +   +        +            +      +  + S   +G+S QRY
Sbjct: 717 GADYAALSNAAKTFQGLTPEGTKVQRGEGDKMRDQTVNDFHGAMQWLLSEAERGVSRQRY 776

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QL+ETTL+   R LL+V+I DA  AD +F+ LMGDEVEPRR FI+ N+L +
Sbjct: 777 KGLGEMNPEQLFETTLDVTQRRLLKVQIEDAIAADQIFTTLMGDEVEPRRNFIESNALVA 836

Query: 800 -ALDI 803
             +D+
Sbjct: 837 RNIDV 841


>gi|148244172|ref|YP_001218866.1| DNA gyrase subunit B GyrB [Candidatus Vesicomyosocius okutanii HA]
 gi|146325999|dbj|BAF61142.1| DNA gyrase subunit B GyrB [Candidatus Vesicomyosocius okutanii HA]
          Length = 805

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/807 (49%), Positives = 558/807 (69%), Gaps = 8/807 (0%)

Query: 1   MSDNI--QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS      +  Y A SI++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDESL 
Sbjct: 1   MSKKQSQNSQEYKASSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDESLA 60

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I + ++ D S +++DNGRGIP D+H EEGISAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 61  GYCSKINIIIHEDKSVSINDNGRGIPIDIHPEEGISAAEVIMTILHAGGKFDNNSYKVSG 120

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG+SVVNALS W+KL + R   IY   +  G+ + P+ V G + N TGT + F P+
Sbjct: 121 GLHGVGISVVNALSEWVKLTVYRNNKIYYQHYNKGVPEKPIQVIGKS-NKTGTIIHFKPN 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +IFS  +FNYD L +R+RELSFLNS V I +  +     ++    YKGGI++F+ +L++
Sbjct: 180 INIFSNTEFNYDILANRIRELSFLNSGVHIGI--EEFSTEKKDIFKYKGGIKSFIKHLNK 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K P+    I I   R+ I I +A++W+D Y +++ CFTNNIPQ++GG+HL+G R  LTR
Sbjct: 238 TKTPIHNDIIEINTQREKIKIVVALQWSDSYQQSIYCFTNNIPQRNGGSHLAGFRGGLTR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y++ S  +KK+K S+ G+D REG T++++IK+PDP+FSSQTK+KLVSSEVR+ +ES
Sbjct: 298 TVNNYIDNSDIAKKEKNSITGEDTREGLTAIINIKIPDPKFSSQTKDKLVSSEVRAPIES 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +ND L+ +  E+P EAKII+KK+LDAS  R+AAR+AR++TRRKG+ DI+SLPGKL+DC 
Sbjct: 358 IINDKLNDYFLENPKEAKIIIKKILDASRARNAARKAREITRRKGLFDISSLPGKLSDCQ 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++P +SE+FLVEGDSAGGSAKQGR+R  QAILPL+GKILNVE++RF+K+LSS E+GTLI
Sbjct: 418 TKNPVESEIFLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKSRFEKILSSAEVGTLI 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG GIG++ +++NKLRYHKI+IMTDADVDGAHIRTLLLTFF+R +P LI NG+LYI +
Sbjct: 478 TALGCGIGKEEYNLNKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLPELIENGYLYIAR 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I +GK  +Y+K+++ L DYL+ + ++            IS  +L   I +  KI+
Sbjct: 538 PPLYKIKKGKQERYLKNDQELNDYLLQEGINNSYLFVSKKTPPISGIELEFLIKEYYKIN 597

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF-IAEKSEKSWHGSI 657
           K+      +++   ++    S   +  ++ +   +  + L   LN  +  +       + 
Sbjct: 598 KIFDKLSKHYNLNLLKAISNSKPIDDLTNHKNMNTWCTNLTKNLNKNLTLEKTHKVIFNK 657

Query: 658 NNSDILVKRIARGVQEQF-VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
           N +++       GV     +L      SF  +  + FS +IE        +     KI++
Sbjct: 658 NTNEVEYTLYVYGVNIDHTILNSVFFNSFDYQSIKEFSKKIENVITQESYVKNINKKIRV 717

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                +++ + +  RKG S QRYKGLGEMN  QLWETT++P+ R+L +VKI D+  +D++
Sbjct: 718 QYFSHVVEFLMNNARKGQSFQRYKGLGEMNPKQLWETTMDPEQRTLFKVKIEDSIISDEV 777

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802
           FS LMGD VEPRR FI++N+L    LD
Sbjct: 778 FSTLMGDAVEPRRNFIEDNALSVNNLD 804


>gi|149185061|ref|ZP_01863378.1| type IIA topoisomeraseB subunit [Erythrobacter sp. SD-21]
 gi|148831172|gb|EDL49606.1| type IIA topoisomeraseB subunit [Erythrobacter sp. SD-21]
          Length = 841

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/849 (49%), Positives = 558/849 (65%), Gaps = 54/849 (6%)

Query: 1   MSDNI--------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M +N         + ++YD+DSI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV DNA
Sbjct: 1   MDENTPESGENAPKKNAYDSDSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--- 109
           IDE+L G+ D++ + LN DGS +V DNGRGIP D+HKEEG+SAAEVIMT+LHAGGKF   
Sbjct: 61  IDEALAGHCDLVLIELNADGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGKFENT 120

Query: 110 -NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN- 167
            +  +YKVSGGLHGVGVSVVNALS WL+L I R+G  + M F +G     L V G A   
Sbjct: 121 SDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHWMRFEHGDAVESLRVVGDAPPV 180

Query: 168 ---------DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
                      GT VTF  S + F    ++++D L+HR REL+FLNS V+I L D R  E
Sbjct: 181 ASNGDENGLKKGTRVTFKASEETFKNVIEYDFDKLEHRYRELAFLNSGVRILLRDNRPEE 240

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
           P E  +FY+GGI AFV YLDR+K+ L+  PI +   ++ I ID+A+ WND Y+ENVLCFT
Sbjct: 241 PLEHDLFYEGGIAAFVKYLDRNKQALVAEPISVSAEKEGIGIDVALEWNDSYYENVLCFT 300

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+  R+ALTR + +Y   S   KK+K S+ G+D REG T+++S+K+PDP
Sbjct: 301 NNIPQRDGGTHLAAFRAALTRTLNNYATASGLMKKEKVSLSGEDMREGLTAIVSVKLPDP 360

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F SQTK+KLVSSEVR  +ES + + ++ WLEE+P +AK I++KV+DA      A R   
Sbjct: 361 KFGSQTKDKLVSSEVRQPLESLMGEKMTEWLEENPNDAKQIIQKVIDA-AAAREAARRAR 419

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
              RKG + IASLPGKL+DC ERD  K+ELFLVEGDSAGGSAK GR  + QAILPL+GKI
Sbjct: 420 EMSRKGAMSIASLPGKLSDCRERDASKAELFLVEGDSAGGSAKNGRDSQYQAILPLKGKI 479

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVERARFD+++SS+E+GTLI A+GTG+ +D F++ KLRYHKI+IMTDADVDGAHIRTLL
Sbjct: 480 LNVERARFDRIISSKEVGTLIQAMGTGL-RDEFNLEKLRYHKIVIMTDADVDGAHIRTLL 538

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           LTFF RQMP ++  G L+I +PPLY +TRGKS  Y+KD+ + + YLI   LS  I     
Sbjct: 539 LTFFHRQMPEIVKAGHLFIAQPPLYKVTRGKSEVYLKDQPAFDRYLIEAGLSGRILE--T 596

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  DL   +  AL++   +      ++   +E   I+G  + E       +  SK
Sbjct: 597 GSGPRASGDLEALVQHALRVRNHMNFVPRKYNAEIVEAMAIAGALDPEGTDR--EAALSK 654

Query: 638 LANRLNFIAEKSEKSWHGSINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            A  L      +E  W   +     +   R+ RGV +   +EG  + S  ++     +  
Sbjct: 655 AAAHLQMG--DTEAKWSAELGEDGHVRFHRVWRGVTDVHEIEGRFLDSAEARKLHRVAQE 712

Query: 697 IEENYLTILSLICN---------------GDKIKITG------PCSLLDTIFSIGRKGIS 735
             E Y + + LI                    ++++G      P  L+D + + GRKG+ 
Sbjct: 713 NAEVYASPVRLIRGSEEEAEAEVESDDVEEAAMQVSGDDALILPSQLVDAVMAAGRKGLK 772

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           + R+KGLGEM+A QLWETTL+P+ R+LL+VK+ DA   D++F+RLMGD VEPRREFIQ N
Sbjct: 773 VSRFKGLGEMDAEQLWETTLDPENRALLQVKVEDADVTDEIFTRLMGDVVEPRREFIQAN 832

Query: 796 SLPS-ALDI 803
           +L    LD+
Sbjct: 833 ALNVANLDV 841


>gi|32490765|ref|NP_871019.1| hypothetical protein WGLp016 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165971|dbj|BAC24162.1| gyrB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 803

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/804 (48%), Positives = 540/804 (67%), Gaps = 13/804 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y + SI+ILKGL+AVKKRP MYIGDTD  +GLHHMI+EV+DN+IDE+L G+   I VT+
Sbjct: 4   NYTSSSIKILKGLEAVKKRPGMYIGDTDDGTGLHHMIFEVVDNSIDEALAGFCKKIIVTI 63

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + D S +V D+GRGIP D+H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVG+SVV
Sbjct: 64  HEDKSISVEDDGRGIPVDIHEEEGISAAEVIMTVLHAGGKFDNDSYKVSGGLHGVGISVV 123

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDF 187
           NALS  L+L I R G  Y  ++  G    PL   G +   TGT++ F P+  IF    +F
Sbjct: 124 NALSEKLELTIYRNGKEYNQNYNFGSPCFPLKKIGKS-RKTGTKIRFWPNLSIFKKNIEF 182

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            Y+ L  RL ELSFLNS++ I LID ++ +       Y+GGI+ FV YL ++K P+  + 
Sbjct: 183 QYEILFKRLMELSFLNSNISIYLIDIKNNKN--KHFHYEGGIKEFVKYLHKNKNPIHSNM 240

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                 +D I +++A++WNDG+ EN+ CFTNNI QKDGG+HL G RSA+TR I SY++K 
Sbjct: 241 FYFIKEKDKILVEIALQWNDGFKENINCFTNNISQKDGGSHLIGFRSAITRTINSYMDKE 300

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K    GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV++ VES +N+    +
Sbjct: 301 GYNKKSKVITTGDDTREGLVAIISVKVPDPKFSSQTKDKLVSSEVKTAVESLLNEQFFIF 360

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P ++K IV K+LDA+ VR+AA+R R++TR+KG LD+  +PGKLA C E +P   EL
Sbjct: 361 LLENPKDSKFIVNKILDAARVREAAKRIREMTRKKGALDVIGIPGKLASCQENNPSLCEL 420

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           +LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG GIG+
Sbjct: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGR 480

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D ++ +KLRYH IIIMTDAD+DG+HIRTLLLTFF+RQMP +I  G+L+I +PPLY I  G
Sbjct: 481 DEYNPDKLRYHCIIIMTDADIDGSHIRTLLLTFFYRQMPEVIDRGYLFIAQPPLYKIKIG 540

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K+ +Y+K++ ++E++ I +S+            +IS   L+N I D L I K+I +    
Sbjct: 541 KNKKYIKNDNAMENFQIKRSVENASLKLNSKSSIISGKSLKNIIYDFLNIKKIISE-TEF 599

Query: 608 HDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSINN-----S 660
             K  +  ++       E   ++E        L   ++ +     K     I+       
Sbjct: 600 SPKELLMYSLNQSELKKEHFLNKEKLKIWLLNLEKNIDELNSNKFKYSFEIIDKDCSGFY 659

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
             L+K+   G+++++ +  + I     K      N+I+        +    ++  I    
Sbjct: 660 KFLLKKELYGIKKKYCINKNFINLIEYKTIVCLINKIDYISKKHAYVKKGNNRHNIKNIE 719

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
              + +    R+G+++QRYKGLGEMN  QLWETT+NP +RS+++V I DA  AD LFS L
Sbjct: 720 EACNWLLKESRQGMTIQRYKGLGEMNPEQLWETTMNPVSRSMMQVTIKDAIVADQLFSTL 779

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD VEPR+ FI++N+L    +DI
Sbjct: 780 MGDSVEPRKSFIKKNALNVSNIDI 803


>gi|67459339|ref|YP_246963.1| DNA gyrase subunit B [Rickettsia felis URRWXCal2]
 gi|75536235|sp|Q4UKX5|GYRB_RICFE RecName: Full=DNA gyrase subunit B
 gi|67004872|gb|AAY61798.1| DNA gyrase subunit B [Rickettsia felis URRWXCal2]
          Length = 808

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/809 (53%), Positives = 570/809 (70%), Gaps = 7/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+       SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DNAIDESL
Sbjct: 1   MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHQEEGISAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y + F NGI + PL V     N  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNGITEAPLAVVNEDINKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+  +F++ T++HRLREL+FLNS V+I L+D R  E +E+  +Y GGIEA+V Y+D
Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEAKEVEFYYTGGIEAYVKYID 240

Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +     +  + +   IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAVHPCIVVNTENTESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKSKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP E+K I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAESKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALGTG+    F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI
Sbjct: 481 LITALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 540

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G +  Y+K+E++L+DYLI  ++++      D K  +  ++L   I+  +K
Sbjct: 541 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-TLDGKEQLVGDNLEELINKVVK 599

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ + N +  +  + S   K  + LN + E  +K+ W  
Sbjct: 600 FNGLLDHASKKFNRSITEILAINDLLNNKIFELESDSRLQKALDVLNSLEESPDKTNWEV 659

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + +   R +RG++E  +L    + SF        +  I + +   L LI    +  
Sbjct: 660 LKHENKVEFFRFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFDKQLKLIVKSQEFG 719

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I     LL+ I   G++GIS+QR+KGLGEMN++QLWETTL+P  R+LL+V++ +  +A+ 
Sbjct: 720 ILTASQLLNAIIECGKRGISIQRFKGLGEMNSNQLWETTLDPAKRTLLQVRVAEVDEAEG 779

Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +FS LMGD VEPRR FIQ N+L    LD+
Sbjct: 780 IFSTLMGDVVEPRRLFIQANALNVVNLDV 808


>gi|134093298|ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans]
 gi|133737201|emb|CAL60244.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans]
          Length = 835

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/828 (46%), Positives = 531/828 (64%), Gaps = 30/828 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S +  +++Y A SIQIL+GL+AV+KRP MYIGDT   +GLHH ++EVLDN+IDESL G+ 
Sbjct: 12  SPSTLSAAYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSIDESLAGHC 71

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
             I VT++ D S +++DNGRGIPT +      E   SAAE++MT LHAGGKF+Q SYKVS
Sbjct: 72  TEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 131

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VN LS  LKL I+R+G  + M F+ G+              +P+ V G  
Sbjct: 132 GGLHGVGVSCVNGLSRLLKLTIRRDGKTHYMEFVRGVPQNREIETIDGHIVSPIKVIGET 191

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            +  GTEV F    +IF+  +F+YD L  R+RELSFLN+ V+I L D+R+ +       +
Sbjct: 192 -DKRGTEVHFWADEEIFNNVEFHYDILAKRIRELSFLNNGVRIRLSDQRTGKE--ELFAF 248

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNNI 280
           +GG   FV Y+++ K  L  +  +  G R      NI++D++M+WND Y+E V+CFTNNI
Sbjct: 249 EGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNIAVDVSMQWNDAYNEQVICFTNNI 308

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+GLR+A+TR I  Y+++   +KK K  V GDD REG T VLS+K+P+P+FS
Sbjct: 309 PQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEVTGDDMREGLTCVLSVKVPEPKFS 368

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR  VE  V   L+ +L+E P +AKII  K+++A+  R+AAR+ARDLTR
Sbjct: 369 SQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAARKARDLTR 428

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGV+D   L  KLADC E+DP   EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV
Sbjct: 429 RKGVMDGLGLSSKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 488

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+ARF+KML+S++I TLI  LGT IG D F+I KLRYH+IIIMTDADVDGAHIRTLLLT 
Sbjct: 489 EKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDADVDGAHIRTLLLTL 548

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +RQMP L+  G +YI +PPLY +  GK  +Y+KD+     Y++  +L++   +  +   
Sbjct: 549 LYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVYMMQIALNDAALVPAEGAE 608

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            IS + L   +      + +I       D   +  A+++GV    S QE   + A +L +
Sbjct: 609 PISGDALAELVRQYNTSNAIINRLTRMVDGAALT-AIMTGVTLDLSSQEAANASAQRLQD 667

Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
            +   + +             + + R+  G  +   ++   +     +     +   +  
Sbjct: 668 GIGEPSVEVIVRHDELAEKFSLRIHRMYHGNIKVSAIDAEFVNGADYRVLAAAAATFKGL 727

Query: 701 YLTILSLICN-GDKIK---ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
             T   +    G+K+K   I      ++ + S   + +  QRYKGLGEMN SQLWETT++
Sbjct: 728 IGTGAMVQRGVGEKVKSIGINDFHQAMNWLRSEAERNVGKQRYKGLGEMNPSQLWETTMD 787

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           P  R LL+V+I DA  AD +F+ LMGD+VEPRR FI+ N+L +  +DI
Sbjct: 788 PTVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALSAGNIDI 835


>gi|91205810|ref|YP_538165.1| DNA gyrase subunit B [Rickettsia bellii RML369-C]
 gi|157827062|ref|YP_001496126.1| DNA gyrase subunit B [Rickettsia bellii OSU 85-389]
 gi|123266189|sp|Q1RHT8|GYRB_RICBR RecName: Full=DNA gyrase subunit B
 gi|91069354|gb|ABE05076.1| DNA gyrase subunit B [Rickettsia bellii RML369-C]
 gi|157802366|gb|ABV79089.1| DNA gyrase subunit B [Rickettsia bellii OSU 85-389]
          Length = 808

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/809 (52%), Positives = 571/809 (70%), Gaps = 7/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+    +  SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DNAIDE+L
Sbjct: 1   MSEFEEKLNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ V LN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGYCDLVRVVLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    + + F NGI + PL V     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSDWLELRIWRNNTEHLIRFNNGITEAPLAVVKENVDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+  +F++  ++HRLREL+FLNS V+I L D R  E +E+  +Y GGIEA+V YLD
Sbjct: 181 SVETFTNIEFDFSIIEHRLRELAFLNSGVKILLTDNRFEEVKEVEFYYTGGIEAYVKYLD 240

Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +     +    +   IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS  +S L
Sbjct: 241 RAKHAVHSCIVVNADNTESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSGL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR IT+Y+E +  +KK K +  G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR +V
Sbjct: 301 TRVITAYLENTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPIV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP +AK+I+ K+++A+  R+AAR+AR+LTRRK VL++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVLEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAVSELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALGTG+    F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI
Sbjct: 481 LITALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 540

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G S  Y+K+E++L+DYL+  ++S+      D+K  ++  +L   +   +K
Sbjct: 541 AQPPLYKVKKGASELYLKNEQALQDYLVKSAISDATL-TLDNKEQLTNENLEELMSKVIK 599

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ + N +     + S   K  N LN + +  +K+ W  
Sbjct: 600 FNSLLDHASKKFNRSITEILAINDLLNNKIFDNESDSRLKKALNALNSLEQSPDKTDWEV 659

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I   R +RG++E+ +L    + SF        +  I + +   L L+    +  
Sbjct: 660 LKHENKIEFFRFSRGLKERKILLREQLESFEFINISKLALTIFDVFNKQLKLVVKNQEFD 719

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I  P  LL+TI   G+KGIS+QR+KGLGEMN+ QLW+TTL+P  R+L++V++ +  +A+ 
Sbjct: 720 ILTPSILLNTIIECGKKGISVQRFKGLGEMNSDQLWDTTLDPKKRTLMQVRVAEVDEAEG 779

Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +FS LMGD VEPRR+FIQ N+L    LD+
Sbjct: 780 IFSTLMGDVVEPRRQFIQSNALNVVNLDV 808


>gi|149925374|ref|ZP_01913638.1| DNA gyrase, B subunit [Limnobacter sp. MED105]
 gi|149825491|gb|EDM84699.1| DNA gyrase, B subunit [Limnobacter sp. MED105]
          Length = 841

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/831 (45%), Positives = 531/831 (63%), Gaps = 38/831 (4%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            N+ Y   SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I 
Sbjct: 16  NNADYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 75

Query: 66  VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           VT++ D S +V+DNGRGIPT     D H E   SA+E+ +T LHAGGKFNQ SYKVSGGL
Sbjct: 76  VTIHADNSISVTDNGRGIPTGVKMDDKH-EPKRSASEIALTELHAGGKFNQNSYKVSGGL 134

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGND 168
           HGVGVS VNALSSWL+L ++REG ++++ F  G +             +P+ + G   + 
Sbjct: 135 HGVGVSCVNALSSWLRLIVRREGKVHQLEFARGFVQNRIIEQVDGVDVSPMKIVG-TTDK 193

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GTEV FLP + IF   + F+Y+ L  RLRELSFLN+ V+I L D+R+ +         G
Sbjct: 194 RGTEVHFLPDTQIFQQNNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKE--DDFAGSG 251

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFT 277
           G+  FV +++ +KK L  +     G R           +I ++++M+WNDG++E+VLCFT
Sbjct: 252 GVMGFVEFINANKKILHPNTFYAAGERPAETYGGIPGTSIGVEVSMQWNDGFNESVLCFT 311

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+GLR+A+TR I  Y+E +  +KK K  V GDD REG   VLS+K+P+P
Sbjct: 312 NNIPQRDGGTHLTGLRAAMTRVIGKYIEVNEIAKKQKVEVTGDDMREGLCCVLSVKVPEP 371

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEVR+ VE  V   L  +LEE P +AK+I  K+++A+  R+AAR+ARD
Sbjct: 372 KFSSQTKDKLVSSEVRAPVEDIVAKVLGEFLEERPNDAKLICLKIVEAARAREAARKARD 431

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKGVLD   LPGKLADC ERDP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+
Sbjct: 432 MTRRKGVLDGVGLPGKLADCQERDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 491

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVE+ARFDK+L+S++I TLITALGT IG+D F++ KLRYH+IIIMTDADVDGAHIRTLL
Sbjct: 492 LNVEKARFDKLLTSEQITTLITALGTSIGKDDFNLAKLRYHRIIIMTDADVDGAHIRTLL 551

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           LT  +RQMP L+ +G +YI +PPLY +  GK  +Y+KD++    Y++  +L +   +  +
Sbjct: 552 LTLLYRQMPELVEHGHVYIAQPPLYKVKHGKDERYLKDDQEEAQYMLGIALEKAGLIPGE 611

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
            K  I    L       + ++ +++      D   +   V     + +  +E + + A++
Sbjct: 612 GKEPIKGEALEELARQFVTVEAVVRRLSRMIDPDVLNAIVEGVELDLD-SEEASKASAAR 670

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L   L+         +    +   +L+ R   G      ++   +           +   
Sbjct: 671 LQAVLDPTIMTVFSQFDEQSDKHRVLIHRRHHGNVRVTTIDPDFVHGADYPLLAHAAKTF 730

Query: 698 EENYLTILSLICNGDK----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
           +   +    +     +      +      +  +     K I+ QRYKGLGEMN  QLWET
Sbjct: 731 KGLIMEGAEIQRGEGEKQKVQAVQSFREAMHWLREQAEKAITKQRYKGLGEMNPQQLWET 790

Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           T++P  R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +  +D+
Sbjct: 791 TMDPTVRRLLRVQIEDAIAADQIFTTLMGDEVEPRRAFIESNALKAGNIDV 841


>gi|222053121|ref|YP_002535483.1| DNA gyrase, B subunit [Geobacter sp. FRC-32]
 gi|221562410|gb|ACM18382.1| DNA gyrase, B subunit [Geobacter sp. FRC-32]
          Length = 794

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/806 (48%), Positives = 529/806 (65%), Gaps = 15/806 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS++  +  Y AD I++L+GL AV+KRP+MYIG T    GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSNDETSKDYGADKIKVLEGLSAVRKRPAMYIGSTS-IQGLHHLVYEVVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N+DGS TV DNGRGIPTD+H  EG SAAEV++T LHAGGKF+  SYKVSGGL
Sbjct: 60  CDDIAVTINVDGSVTVVDNGRGIPTDMHPTEGKSAAEVVLTVLHAGGKFDNTSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G I++ S+  G    PL V G      GT++ F P  +
Sbjct: 120 HGVGVSVVNALSKKLELEIRRDGKIFKQSYRCGDPQGPLEVVGETK-KRGTKIIFFPDDE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F++D L  RLREL+FLN+ V+I ++D+R+ +  E   FY+GGI +FV YL+++K
Sbjct: 179 IFETTEFSFDILSQRLRELAFLNAGVKIKIVDERTEKVHE--FFYEGGIRSFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   PI I G +  + +++AM++ND Y E V  F NNI   +GGTHL G ++ALTR +
Sbjct: 237 TPIHPQPIFINGEKGGVEMEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFKAALTRTM 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y   +   K  K ++ G+D REG T+V+S+K+  P+F  QTK KL +SEV+  VE+ +
Sbjct: 297 NTYANTNNLLKNVKENISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ +LEE+P  AK I++K +DA+  R+AARRARDLTRRKG L++ +LPGKLADC E+
Sbjct: 357 NEKLATYLEENPQIAKRILEKSIDAARAREAARRARDLTRRKGALEVGTLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQEI TLI A
Sbjct: 417 DPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSSQEIRTLIAA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGT +G+  FDI KLRYH+IIIMTDADVDG+HI TLLLTFFFRQM  LI  G+LYI +PP
Sbjct: 477 LGTSVGKGDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I RGK  QY+K+E +L+ YL+ +   + I  F   +       +   +   ++   L
Sbjct: 537 LYKIKRGKKEQYLKNEAALQSYLLEEGTEDLILRFGSDERTYRGKQIIPLLRQIIEHQSL 596

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                       + +  +      +S  +  +   S+L   L  + E    + +   +  
Sbjct: 597 FGKVVKKGVNEELLKIFL------KSGVKSGLEEISELEPYLARMKENFPDADYMPGDQK 650

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI--KITG 718
            I +    R   +Q + +   I S+          ++E       + +   +K   +   
Sbjct: 651 IIFMLGNLRVSIDQHIFDA--INSYEYDLLVESQRKVETIMGNESATVATEEKQLLETES 708

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              LL       +KG+ +QRYKGLGEMN  QLWETT++P+ R LL+VKI D  +A+++F+
Sbjct: 709 HEELLAFFLETAKKGLYIQRYKGLGEMNPEQLWETTMHPENRLLLQVKIEDTVEAEEIFT 768

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRREFI+ N+L    LDI
Sbjct: 769 VLMGDQVEPRREFIELNALNVSNLDI 794


>gi|171462835|ref|YP_001796948.1| DNA gyrase, B subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192373|gb|ACB43334.1| DNA gyrase, B subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 832

 Score =  851 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/836 (47%), Positives = 531/836 (63%), Gaps = 37/836 (4%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++  +    Y A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE L G
Sbjct: 1   MTEEKKVVEQYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEVLAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYK 115
           Y   ITV +  D S ++ DNGRG+PT +      E   SAAE+ MT LHAGGKF+Q SYK
Sbjct: 61  YCSEITVVIQTDNSISIVDNGRGVPTGIKYDDKHEPKRSAAEIAMTELHAGGKFDQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163
           VSGGLHGVGVS VNALS WL+L I+R+G  Y M F  G++             +P+ VTG
Sbjct: 121 VSGGLHGVGVSCVNALSKWLRLTIRRDGKAYYMEFARGVIQNRNVVDEGGVLISPITVTG 180

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                +GTEV FL   +IF   +F+Y+ L  R+RELSFLN+ V I LID+R+ +      
Sbjct: 181 DTE-LSGTEVHFLADEEIFGNVEFHYEILVKRIRELSFLNNGVHIKLIDQRTSQK--EDF 237

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTN 278
            + GG++ FV Y+++ K  L  +    +G R       I+ +++M+WNDG+ E VLCFTN
Sbjct: 238 AFSGGVKGFVEYINQTKNILHPNIFYAEGVRPSDLGGQITAEVSMQWNDGFSEQVLCFTN 297

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR I  Y++++  +KK K  + GDD REG   VLS+K+P+P+
Sbjct: 298 NIPQRDGGTHLTGLRAAITRVINKYIDENEIAKKAKVEISGDDMREGLACVLSVKVPEPK 357

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR  VE  V + LSA+L+E P +AKI+  K++DA+  R+AAR+ARD+
Sbjct: 358 FSSQTKDKLVSSEVRGPVEEIVAEALSAYLQERPADAKILCGKIVDAARAREAARKARDM 417

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TR KG LD   LPGKLADC E+DP KSELF+VEGDSAGGSAKQGR R  QAILPL+GKIL
Sbjct: 418 TRCKGALDGLGLPGKLADCQEKDPSKSELFIVEGDSAGGSAKQGRDRRFQAILPLKGKIL 477

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NVE+ARFDKM +SQE+ TLIT LGTGIG + +  +KLRYH+IIIMTDADVDG+HIRTLLL
Sbjct: 478 NVEKARFDKMFASQEVVTLITVLGTGIGIEEYKADKLRYHRIIIMTDADVDGSHIRTLLL 537

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TFF+RQMP LI  G ++I +PPLY +  GKS QY+KD+  L   L+  +L         S
Sbjct: 538 TFFYRQMPELIERGHIFIAQPPLYKVKFGKSEQYIKDDNELNQLLLRIALETASLQTP-S 596

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS---LA 635
             +I  + L   +     I  ++  F    D+  +         N ++++  N S   L 
Sbjct: 597 GEIIEGDALNELVKHYQVIQSIVDRFSRTIDEDALRAIASGTSLNLDTEKSANDSADRLR 656

Query: 636 SKLANRLNFIAEKSEKSWHGS--INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
             LA+ LN +A   E             +L+ R   G  +   +    +     +     
Sbjct: 657 QALADSLNPLAAAPEIIVQKEDRTERYRLLLSRRIHGNLKLSSINSDFVHGDDYQSLANA 716

Query: 694 SNRIEENYLTILSLICNG-----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
           +  +    +    +          +  I    +    + S   + +S QRYKGLGEMN S
Sbjct: 717 AAVLSGKVVAGSKVRRGDPDKNQKEQTIGDFRAAFAWLLSEAERVLSRQRYKGLGEMNPS 776

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           QLWETT++ ++R+LL+VKI DA  AD +F+ LMGDEVEPRR FI++N+L +  LD+
Sbjct: 777 QLWETTMDANSRTLLQVKIEDAIAADQVFTTLMGDEVEPRRAFIEKNALIARNLDV 832


>gi|330994267|ref|ZP_08318195.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1]
 gi|329758734|gb|EGG75250.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1]
          Length = 848

 Score =  851 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/804 (52%), Positives = 559/804 (69%), Gaps = 12/804 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + YDA SI +L+GLDAV+KRP MYIGDTD  SGLHHM +E++DNA+DE+  G+A    VT
Sbjct: 49  ADYDAASISVLRGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGFATTCIVT 108

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV D+GRGIPTD+H EEG+SAAEV++T+LHAGGKFNQ SYKVSGGLHGVG +V
Sbjct: 109 LNGDGSVTVRDDGRGIPTDMHHEEGVSAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAAV 168

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS W+++RI REG  + + F +G  D  L V G +    GT+VTF PS+  F+  +F
Sbjct: 169 VNALSEWMEVRIWREGREHVIRFRHGERDEALRVVGESAEPRGTQVTFKPSAQTFAKVEF 228

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            +  L+ RLREL+FLNS ++I L D+R    RE    Y+GG+ AFV +LD+ K  +++ P
Sbjct: 229 EFPILERRLRELAFLNSGLKIVLRDERHEPAREENFHYEGGLCAFVEWLDQGKTAIVEPP 288

Query: 248 I--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           I   +Q   + I ++ A+ WND +HE +LCFTNNIPQ+DGG+HL+G R ALTR +  Y E
Sbjct: 289 ITGSLQNDENGIKVEFALTWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRVVGRYAE 348

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K    ++ G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VV +   D +S
Sbjct: 349 ANATKKDS-HALNGEDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAAADMIS 407

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            W E HP EA+ IV KV+DA+  R+AARRAR+LTRRKGVLDI+SLPGKLADC ERDP K 
Sbjct: 408 HWFETHPKEARHIVAKVMDAAAAREAARRARELTRRKGVLDISSLPGKLADCQERDPSKC 467

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGG+AKQGR R  QAILPL+GKILNVERARFD+ML S EIGTLITALGTGI
Sbjct: 468 ELFLVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSAEIGTLITALGTGI 527

Query: 486 GQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           G+       F I KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP LI  G+LYI +PP
Sbjct: 528 GRGDVEHGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPELIEKGYLYIAQPP 587

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY   RG   +Y+KD+ +LE YL++++L+     + D +  ++   +R  +     + + 
Sbjct: 588 LYRAKRGNDERYLKDDAALESYLLDKALANAALRYADGRE-LTGEAMRAEVLFIRDVTRA 646

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           +           +EQA I+GV   +   +        L  RL+ ++  +E+ W  +++NS
Sbjct: 647 LSRLSARVPVWVLEQAAIAGVLRPDL--QAMPERIVDLQARLDAVSPPAERGWKVAVSNS 704

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            + + R  RGV E + LE +++ S   ++      R+  ++   ++L+ +G      GP 
Sbjct: 705 GLEMARSVRGVGEVYRLEATALRSAEVRWLAERHARLVADFTQPITLLLDGAPQSFNGPA 764

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           SL + I + GRKG+S+ R+KGLGEMN  QLWETTL+P  R+LL+VK+ D   A  +FS L
Sbjct: 765 SLYERILAQGRKGLSINRFKGLGEMNDEQLWETTLDPAMRTLLQVKVGDIENAAQVFSTL 824

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD VEPRR+FI  N+L    LD+
Sbjct: 825 MGDVVEPRRDFIVGNALKVANLDV 848


>gi|325294445|ref|YP_004280959.1| DNA gyrase, B subunit [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064893|gb|ADY72900.1| DNA gyrase, B subunit [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 804

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/811 (47%), Positives = 536/811 (66%), Gaps = 15/811 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N +   YDA +I++L+GL+AV+KRP MYIGDT G  GLHH+++E++DN++DE+L GY
Sbjct: 1   MANNEK---YDASAIKVLEGLEAVRKRPGMYIGDT-GSYGLHHLVFEIIDNSVDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV DNGRGIP D+H E G  AAE++MT LHAGGKF +K+YK SGGL
Sbjct: 57  CTEIKVIIHEDNSITVEDNGRGIPVDIHPEYGKPAAEIVMTVLHAGGKFEKKAYKYSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WLKL I ++G +Y+  +  G         G      GT VTF P  +
Sbjct: 117 HGVGVSVVNALSEWLKLEIHKDGKVYKQIYEKGNPVTEFACIGETK-KRGTIVTFKPDPE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF V +F++D L +RLREL+FLN  ++I+LID+R+   +E T +Y+GGI  FV  ++  K
Sbjct: 176 IFEVTEFSWDILANRLRELAFLNKGLKITLIDERTEPQKEETFYYEGGIVEFVKKINEKK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL  +PI I G +D+I +++A+++N  Y E V  F NNI  ++GGTH+SG R+ALTR I
Sbjct: 236 DPLFPNPIYIAGEKDDILVEVALQYNSTYTEQVFSFVNNINTREGGTHVSGFRTALTRAI 295

Query: 301 TSYVEKSFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
             ++E++    K+ K SV GDD REG  +V+S+K+P+P+F  QTK KL +SEVR +V S 
Sbjct: 296 IKFIEENNLLPKNAKISVTGDDVREGLVTVISVKVPNPQFEGQTKAKLGNSEVRPIVASI 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D L A+L E P   + I +KV+ A+  R+AA+RAR+LTRRK  L+  SLPGKLADCSE
Sbjct: 356 VYDKLYAFLTERPDIGRKIAEKVITAARAREAAKRARELTRRKSALEEFSLPGKLADCSE 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP+K+ELFLVEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR +K+LS+ EI T+IT
Sbjct: 416 RDPQKTELFLVEGDSAGGSAKQGRDRRFQAILPLKGKIINVEKARIEKVLSNDEIKTIIT 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG++ FD++KLRY KIIIMTDADVDGAHIRTLLLTFFFRQ P ++  G LYI +P
Sbjct: 476 ALGTGIGKN-FDMSKLRYSKIIIMTDADVDGAHIRTLLLTFFFRQFPEIVERGHLYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK   Y+K +  LE  +++ +L   + L  + K +  +  L   ++D  K++ 
Sbjct: 535 PLYRVKKGKREMYIKSDSELESVVLDFALDSVLLLDNNGKEIPKEEGL-KVVEDISKLES 593

Query: 600 LIKDFYPNHDKTFIEQAVISGV-FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
           ++       D+  I   +  G  +    D+E    L  ++   L     K+E        
Sbjct: 594 VVSILSRKRDRDIINILLRIGADYKDLYDREKAEKLVEEIKKNLPESLRKTEFELIEDKE 653

Query: 659 N--SDILVKR-IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI--CNGDK 713
           +    I  +    R +++   +    + S   K+ R   +RI E        +    G+ 
Sbjct: 654 HCCFKIFCRIPFDRYLKKTVEINKDLLISDLYKHGRGLKSRIREKLGEPPYKVETKKGEV 713

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            +      L + +  +G++GI +QRYKGLGEMN  QLWETT+NP+ R+LL+V + DA +A
Sbjct: 714 KEFLTLEELYNYLLQVGKEGIYIQRYKGLGEMNPDQLWETTMNPENRTLLKVSVEDAVKA 773

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D++F+ LMGD+VEPR+EFIQ+ +     LDI
Sbjct: 774 DEIFTILMGDKVEPRKEFIQKFAKEVRNLDI 804


>gi|237749316|ref|ZP_04579796.1| DNA gyrase subunit B [Oxalobacter formigenes OXCC13]
 gi|229380678|gb|EEO30769.1| DNA gyrase subunit B [Oxalobacter formigenes OXCC13]
          Length = 830

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/835 (45%), Positives = 519/835 (62%), Gaps = 37/835 (4%)

Query: 1   MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS N QN       +Y   SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+ID
Sbjct: 1   MSQNSQNDVQQNEENYGVSSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG----ISAAEVIMTRLHAGGKFN 110
           E+L G+   I VTL+ D S +V DNGRG+PT +  ++      SAAE++MT LHAGGKF+
Sbjct: 61  EALAGFCTEIHVTLHADNSVSVVDNGRGVPTGIKFDDKNTPRRSAAEIVMTELHAGGKFD 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NP 158
           Q SYKVSGGLHGVGVS VN LS+ LKL I R+G  + M F  G+              +P
Sbjct: 121 QNSYKVSGGLHGVGVSCVNGLSTLLKLTIWRDGKEHYMEFAQGLPQNNSVEMINGVECSP 180

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + + G +    GT V F P   IF+  +F Y+ L  R+RELSFLN+ V+I L D+R+ + 
Sbjct: 181 IKIVGVSDKQ-GTRVQFWPDPTIFTTIEFQYEVLARRIRELSFLNNGVRIRLTDQRTGKE 239

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENV 273
                 Y+GG   FV Y++R K  L  +  +  G R       I +D++M+WND Y+E V
Sbjct: 240 --EIFAYEGGTRGFVEYINRGKSVLHPTIFQATGERMSELGTPIYVDISMQWNDSYNEQV 297

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG T VLS+K
Sbjct: 298 LCFTNNIPQRDGGTHLTGLRAAMTRVINRYIEENELAKKAKVDVTGDDMREGLTCVLSVK 357

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +P+P+FSSQTK+KLVSSEVR  VE  +   L+ +L+E P +AKII  K+++A+  R+AAR
Sbjct: 358 VPEPKFSSQTKDKLVSSEVRGPVEEIITKTLTDFLQEKPNDAKIICSKIVEAARAREAAR 417

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKGVLD   L  KLADC E+DP   EL+LVEGDSAGGSAKQGR R+ QAILPL
Sbjct: 418 KARELTRRKGVLDGLGLSAKLADCQEKDPSMCELYLVEGDSAGGSAKQGRDRKFQAILPL 477

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNVE++R++KMLSS++I TLI  LGT IG D F+I+KLRYH+IIIMTDADVDGAHI
Sbjct: 478 RGKVLNVEKSRYEKMLSSEQITTLIATLGTSIGPDEFNIDKLRYHRIIIMTDADVDGAHI 537

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           RTLLLT F+RQMP L+  G++YI +PPLY I  GK  +Y+KD+    +++++ +L     
Sbjct: 538 RTLLLTLFYRQMPQLVERGYVYIAQPPLYKIKNGKDERYLKDDLEEANHMMSIALQGASL 597

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
              +    I+   L+   D       +I+      D   +   +     N  S +E   S
Sbjct: 598 TPREGAEPIAGEQLKEMADQHTIAYNIIQRISRMIDMDVLSAIMNGAKLNLNSMEEAEQS 657

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
            A  LA  +N          +    +  + V +   G      L+   ++    +     
Sbjct: 658 -ARSLAKIIN-DPTVEVNVENNENGDIALSVIKTHYGNAHVTRLDKDFVYGNDYRTLEKT 715

Query: 694 SNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749
           +            +         ++ +      +  + S   +GIS QRYKGLGEMN  Q
Sbjct: 716 ATAFLNLIGPGAMITRGEGDRMRQLAVKNFHQAMQWLRSEAERGISKQRYKGLGEMNPDQ 775

Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LWETT++P  R LL+VKI DA  AD +F+ LMGD VEPRR FI+ ++L +  +D+
Sbjct: 776 LWETTMDPTMRRLLKVKIEDAITADQIFTTLMGDNVEPRRAFIENHALLAGNIDV 830


>gi|332524903|ref|ZP_08401089.1| DNA gyrase subunit B [Rubrivivax benzoatilyticus JA2]
 gi|332108198|gb|EGJ09422.1| DNA gyrase subunit B [Rubrivivax benzoatilyticus JA2]
          Length = 829

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/833 (46%), Positives = 529/833 (63%), Gaps = 38/833 (4%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S+    + Y A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L GY 
Sbjct: 4   SNQTPPNDYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGYC 63

Query: 62  DIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           D I VT++ D S +V+DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKV
Sbjct: 64  DDIVVTIHSDNSISVTDNGRGIPTGVKMDDKH-EPRRSAAEIALTELHAGGKFNQNSYKV 122

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGS 164
           SGGLHGVGVS VNALS WL+L ++R+G ++ + F  G+              +P+ + G 
Sbjct: 123 SGGLHGVGVSCVNALSKWLRLTVRRDGKVHRVEFKRGVTQDRVIEVRDGVETSPMKIVGD 182

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             +  GTEV FLP  +IFS  DF+YD L  RLRELSFLN+ V+I L+D+R+ +       
Sbjct: 183 T-DKRGTEVHFLPDDEIFSHVDFHYDVLAKRLRELSFLNNGVKIRLVDERNAKE--DNFA 239

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNN 279
           + GG++ FV ++++ KK L  +     G +       I +++AM+WND Y E+VLCFTNN
Sbjct: 240 FAGGVKGFVEFINQGKKVLHPNVFHAMGEKASEQGTTIGVEVAMQWNDSYSESVLCFTNN 299

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+GLR+A+TR I  Y+E +  +KK K  V GDD REG   V+S+K+P+P+F
Sbjct: 300 IPQRDGGTHLTGLRAAMTRVINKYIEDNELAKKAKVEVAGDDMREGLACVVSVKVPEPKF 359

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEVR+ VE  V   L+ WL E+P +AKII  K++DA+  R+AAR+AR++T
Sbjct: 360 SSQTKDKLVSSEVRAPVEDIVGRLLTDWLLENPNDAKIICGKIVDAARAREAARKAREMT 419

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKGVLD   LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR R+ QAILPLRGKILN
Sbjct: 420 RRKGVLDGIGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLRGKILN 479

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR++K+LSS  I TLITALGTGIG + F+++KLRYH+II+MTDADVDGAHIRTLLLT
Sbjct: 480 VEKARYEKLLSSDAIVTLITALGTGIGPEDFNVDKLRYHRIIVMTDADVDGAHIRTLLLT 539

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF+RQM  L+  G++YI +PPLY + +GK  QY+KD + L+ +L+  +L     L     
Sbjct: 540 FFYRQMHELVERGYIYIAQPPLYKVKQGKHEQYLKDGQELDAFLLKVALDGATVLPDGLA 599

Query: 580 G----VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
                 +    L       +  + +++      D   +         + +S +    S A
Sbjct: 600 EGGRAALQGEALEQLARKYIVANNVVQRLGNWMDLDALRAIANGLELDVDSAEAAQASAA 659

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           +  A   +      E       +   + + R   G  +  V+    +             
Sbjct: 660 ALQAALKDAT---VEFHVDPRTDKPLLRIGRRHHGNVKTSVITQEFLHGADYAALAEAGR 716

Query: 696 RIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLW 751
             +        +         + K+    + +D +       ++ QRYKGLGEMN  QLW
Sbjct: 717 TFKGLLGEEAVVRRGEGEKQKEQKVADFRAAMDWLMVQAEGAVARQRYKGLGEMNPEQLW 776

Query: 752 ETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRREFI+ N+L +  +D+
Sbjct: 777 ETTMDPNVRRLLRVQIEDAIEADRVFTMLMGDEVEPRREFIESNALRAGNIDV 829


>gi|296134507|ref|YP_003641749.1| DNA gyrase, B subunit [Thiomonas intermedia K12]
 gi|294338443|emb|CAZ86769.1| DNA gyrase subunit B [Thiomonas sp. 3As]
 gi|295794629|gb|ADG29419.1| DNA gyrase, B subunit [Thiomonas intermedia K12]
          Length = 827

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/832 (47%), Positives = 530/832 (63%), Gaps = 37/832 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +N SY  +SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D
Sbjct: 2   NEPKNDSYSENSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGFCD 61

Query: 63  IITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            I VT++ D S +V+DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVS
Sbjct: 62  DIVVTIHSDNSISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--------------ILDNPLVVTG 163
           GGLHGVGVS VNALS WL+L ++R+G ++ + F+ G              +   P  +TG
Sbjct: 121 GGLHGVGVSCVNALSQWLRLVVRRDGEVHTLEFVRGALQNRQTQMIDGVEVSVAP--ITG 178

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
              +  GTEV FLP ++IF+  DF+Y+ L  RLRELSFLN  V+I L+D+R  +      
Sbjct: 179 KT-DKRGTEVHFLPDAEIFTTVDFHYEVLAKRLRELSFLNHGVKIRLVDERQGKE--ENF 235

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTN 278
            + GG++ FV Y++R K  L  +    Q  +       IS++++M+WNDGY E V CFTN
Sbjct: 236 AFSGGVKGFVEYINRGKSVLHPNIFYAQAEKASEVGSTISVEVSMQWNDGYAETVQCFTN 295

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR +  Y++ +  +KK K  + GDD REG T VLS+K+PDP+
Sbjct: 296 NIPQRDGGTHLTGLRAAMTRVMNKYIDDNELAKKAKVEISGDDMREGLTCVLSVKVPDPK 355

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR  VE  V   LS +L E P +AKII  K++DA+  R+AAR+AR++
Sbjct: 356 FSSQTKDKLVSSEVRGPVEDLVAKALSDYLLETPTDAKIICGKIIDAARAREAARKAREM 415

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKGV+D   LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR R+ QAILPLRGKIL
Sbjct: 416 TRRKGVMDGLGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLRGKIL 475

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NVE+ARF+K+L+S EI TLITA+GT IG+D F+I+KLRYH+IIIMTDADVDGAHIRTLLL
Sbjct: 476 NVEKARFEKLLTSNEILTLITAMGTSIGKDDFNIDKLRYHRIIIMTDADVDGAHIRTLLL 535

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TFFFRQMP ++  G +YI +PPLY +  GK  QY+KD   L+ YL+  +L + +    D+
Sbjct: 536 TFFFRQMPEIVERGHIYIAQPPLYKVKHGKDEQYLKDASELDAYLLRVALKDAVIHRPDT 595

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES-DQEINVSLASK 637
              ++   L       +  + +I       D+  +   V   V + +   Q    ++A+ 
Sbjct: 596 PAPLAGETLEQLARQHVLAEAVIARLGVFMDEQALRAIVDGVVIDLDHAAQASADAMAAY 655

Query: 638 LANRLNF-IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
           LA   +   A +             + + R   G  +  VL    +           +  
Sbjct: 656 LAKHTDHGEAPQVLAEIDPRTEKPYLRIVRRHHGNLKSTVLHADFVHGADYAVLAQAAQT 715

Query: 697 IEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWE 752
                    ++         +  +      +D +       +  QRYKGLGEMN  QLWE
Sbjct: 716 FHGLIAAGSTVRRGNGDNAKEAAVASFREAMDWLIRQAENTVGRQRYKGLGEMNPEQLWE 775

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           TT++P  R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L  + LDI
Sbjct: 776 TTMDPAVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAANLDI 827


>gi|323143411|ref|ZP_08078096.1| DNA gyrase, B subunit [Succinatimonas hippei YIT 12066]
 gi|322416816|gb|EFY07465.1| DNA gyrase, B subunit [Succinatimonas hippei YIT 12066]
          Length = 807

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/812 (47%), Positives = 518/812 (63%), Gaps = 14/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++Y A  I++L GL+AV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MS---AENNYGASGIKVLHGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+  DGS  V DNGRGIP D H EE  SAAEV+MT LHAGGKF+  SYKVSGGL
Sbjct: 58  CTDIEVTICADGSVKVKDNGRGIPVDEHPEEHRSAAEVVMTVLHAGGKFDSNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVGVSVVNALS  L L I R+G++++ +++NG   + PL   G + + TGTEV F PS 
Sbjct: 118 HGVGVSVVNALSDKLVLTIWRQGHVWQQTYLNGGNPEAPLKQIGDS-DATGTEVRFWPSP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRELSFLNS ++I L D+R    +  T  + GGIE FV YL+R 
Sbjct: 177 SIFSNTTFDYNVLAKRLRELSFLNSGIKIILTDEREA-GKSHTFHHNGGIEEFVRYLNRG 235

Query: 240 KKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           K PL            D+I ++++M+W D Y+E+V CFTNN+PQKDGGTHLSG +SA+TR
Sbjct: 236 KNPLNNKIFHCTKMCEDHIMVEISMQWTDAYNESVFCFTNNVPQKDGGTHLSGFKSAVTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
              S++E    SKK K S  GDD REG T+V+S+KMPDP+FSSQTK+KLVSSE  + V  
Sbjct: 296 IFNSFLESHGYSKKHKVSTSGDDAREGLTAVISVKMPDPKFSSQTKDKLVSSEAGNAVSG 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V++ L  +LEE+P EA  I  K+++++ VR+A R+ARDL+R+ G LDI SLP KLA C 
Sbjct: 356 CVSEKLKDFLEENPAEADNICMKIIESARVREAMRKARDLSRKNGKLDINSLPDKLAACR 415

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP   ELF+VEGDSAGGSAK GR  + QAILPLRGKILNVE+ARFD+M+ SQ++GTLI
Sbjct: 416 EKDPALCELFIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARFDRMIQSQQVGTLI 475

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG G+G+D +D +K RYH +IIMTDADVDGAHIR LLLTFF+RQMP +I  G++YI +
Sbjct: 476 TALGCGVGKDEYDPDKFRYHNVIIMTDADVDGAHIRILLLTFFYRQMPEIIERGYVYIAQ 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY   +GK + YV+ ++    Y    +L         +   I+   L +  +D  K+ 
Sbjct: 536 PPLYRYQKGKQVVYVQSDKEALQYRTTLALDNAAIYVNKAAAPITGLPLESLFNDYNKVM 595

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRL-----NFIAEKSEK 651
             +        K  +   +   +F  +   +     + A     +L       +  +SE 
Sbjct: 596 TSLPKMSLKIHKDILINLMYYPLFTADMFNDEGKVKAWADGFVKQLPSQPTEGVFYRSEV 655

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            +    +     +     G+  ++ L  +   S      +  + ++ +       ++   
Sbjct: 656 KYDAVESAYYPSIVHHIHGIDYRYNLNRNFFESSDYSLLKSLNAKVLDLIEADGYVVSGS 715

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            +I +       + +   G  G+ +QRYKGLGEM+A QL +TT+NPDTR+LL+V I DA 
Sbjct: 716 KQIPVKNFHEAYEVLMKEGFSGVKIQRYKGLGEMSAEQLSDTTMNPDTRTLLKVSIEDAI 775

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +AD L + LMG+EVE RR FI EN+  + LDI
Sbjct: 776 EADRLLTELMGEEVESRRVFISENADKATLDI 807


>gi|157803574|ref|YP_001492123.1| DNA gyrase subunit B [Rickettsia canadensis str. McKiel]
 gi|157784837|gb|ABV73338.1| DNA gyrase subunit B [Rickettsia canadensis str. McKiel]
          Length = 808

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/809 (52%), Positives = 568/809 (70%), Gaps = 7/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+   N   SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DNAIDESL
Sbjct: 1   MSEIEENFNKSSYGADSIKVLKGLEAVRKRPGMYIGDVGNGSGLHHMIYEVVDNAIDESL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ V LN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGYCDLVQVILNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y + F NGI + PL V     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNGITEAPLAVVKENIDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+  +F++ T++HRLREL+FLNS ++I L+D R  E +E   +Y GGIEA+V Y+D
Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGIKILLVDNRFEEAKEAEFYYTGGIEAYVKYID 240

Query: 238 RHKKPLMQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +    I  +  +   I+++LAM WND Y+EN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAIHPCIIVNVDNAESGINLELAMHWNDSYYENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKVKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP EA+ I+ K+++A+  R+AAR+AR+ TRRK  L+I++LPGKLAD
Sbjct: 361 ENIVYTKVLEWFEEHPAEARAIISKIMEAANAREAARKAREFTRRKSALEISNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALGTG+    F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI
Sbjct: 481 LITALGTGVDNQEFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRNMPELINKGYLYI 540

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G +  Y+K+E++L+DYLI  ++++      D K  +   +L   I+  +K
Sbjct: 541 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDGKEQLVDGNLEELINTVVK 599

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            +  +       +++  E   I+ + N +  +  +     K  + LN + E  +K+ W  
Sbjct: 600 FNGCLDHASKKFNRSITEILAINDLLNNKIFEAESDLRCKKALDVLNSLEESPDKTNWEV 659

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I   R  RG++E  +L    + SF        +  I + +   L LI    +  
Sbjct: 660 LKHENKIEFFRFNRGLKESKILLKEQLESFEFVQISKLALTIFDIFCKQLKLIVKSQECD 719

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I  P  LL+TI + G+KGI++QR+KGLGEMN++QLWETTL+P+ R+LL+V++ +  +A+ 
Sbjct: 720 ILTPSQLLNTIIACGKKGINIQRFKGLGEMNSNQLWETTLDPEKRTLLQVRVAEVDEAEG 779

Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +FS LMGD VEPRR FIQ N+L    LD+
Sbjct: 780 IFSTLMGDVVEPRRLFIQANALNVVNLDV 808


>gi|317050926|ref|YP_004112042.1| DNA gyrase subunit B [Desulfurispirillum indicum S5]
 gi|316946010|gb|ADU65486.1| DNA gyrase, B subunit [Desulfurispirillum indicum S5]
          Length = 799

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/804 (48%), Positives = 541/804 (67%), Gaps = 10/804 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y ADSI++L+GL+AV+KRP MYIG T G +GLHH++YEV+DN+IDE+L G+ D +
Sbjct: 1   MTQQAYGADSIKVLEGLEAVRKRPGMYIGST-GITGLHHLVYEVVDNSIDEALAGHCDTV 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D S TV+DNGRGIPT+ HKE+  SAAEV++T LHAGGKF+  SYKVSGGLHGVG
Sbjct: 60  EVVIHTDNSITVTDNGRGIPTEFHKEQNRSAAEVVLTVLHAGGKFDSSSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS  L+L IKR+G I+  S+  G    PL V G     TGT++ FLP S IF  
Sbjct: 120 ISVVNALSEELELEIKRDGKIHRQSYRRGFPQQPLEVVGET-RSTGTKIRFLPDSQIFET 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+Y+ L +RLRE +FLN+ V I + D+R  +       Y+GG+ +FV++L+++K+ L 
Sbjct: 179 TEFSYEILSNRLREQAFLNAGVTIIITDERVEKTNT--FLYEGGLRSFVTFLNKNKQTLH 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             P+ + G +++I +++A+++ND Y E +  + NNI   DGGTHL G +SALTR I +Y+
Sbjct: 237 PEPVHVAGEKNDIIVEIALQYNDTYAETLFTYANNINTVDGGTHLVGFKSALTRCINTYI 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
             +     +K ++ GDD REG T+V+S+K+PDP+F  QTK KL ++E +SVVES   +  
Sbjct: 297 STAKIKGSEKITLSGDDIREGLTAVISVKIPDPQFEGQTKGKLGTTEAKSVVESIFGEKF 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +A+LEE+P  AK I+ K ++A+  R+AAR+AR+LTRRKGVL+  SLPGKLADCSE+DP K
Sbjct: 357 AAYLEENPDVAKQILNKAINAARAREAARKARELTRRKGVLEGNSLPGKLADCSEKDPAK 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAKQGR R NQAILPL+GKILNVE+ARFDKML+S+EI  LITALGTG
Sbjct: 417 SELYIVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLTSEEIKILITALGTG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IGQ+ FDINK+RYHKIIIMTDADVDGAHI TLLLTFFFRQM  +I  G+LYI +PPL+ I
Sbjct: 477 IGQNDFDINKIRYHKIIIMTDADVDGAHIMTLLLTFFFRQMREIIERGYLYIAQPPLFKI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK   YVK E+ L+DYLI+  L   +EL  +    I+    + +I   ++ ++L+  +
Sbjct: 537 QKGKKEMYVKTEKQLQDYLIDLGLDN-VELKDEEGKTITAEQCKEYIRRIVEAERLLHLY 595

Query: 605 YPNHDKTFIEQAVISGVFNCE---SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
                  F  + +       E    +++    +  +  +R     E+    ++   ++ D
Sbjct: 596 QKKGFDIFFIKELAKNAVAVETELRNEQSARDIVERCVSRYGHRPEQFSVDFNEDTSSYD 655

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK-IKITGPC 720
           I   R     +    +      S   +  R     + ++      L+ +GD+ +++    
Sbjct: 656 ITFTREEYSYRTTMTINNKIASSVELRKLRDIYQYLRQSMGRSPFLVKDGDRSVELGSYL 715

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
              + +   G+KG+ +QRYKGLGEMNA QLW+TT+ PD RSLL+V I D  +AD  F+ L
Sbjct: 716 KFKNYVVERGKKGVGIQRYKGLGEMNADQLWDTTMCPDNRSLLQVSIDDLVEADGAFTIL 775

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD VEPRREFI +N+L    LDI
Sbjct: 776 MGDNVEPRREFIYDNALNVRNLDI 799


>gi|169260665|gb|ACA52058.1| DNA gyrase B subunit [Shewanella sp. JG353]
          Length = 762

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/765 (48%), Positives = 508/765 (66%), Gaps = 11/765 (1%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHHM++EV+DN+IDE+L G+   IT+T+++DGS +V D+GRGIP  +H+EEG+SAAEVIM
Sbjct: 1   LHHMVFEVVDNSIDEALAGHCTDITITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIM 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G+ D P+ 
Sbjct: 61  TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIK 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
             G A   TGTE+ F PS   FS  +F+++ L  R+RELSFLNS V I L+D+R  +   
Sbjct: 121 EIGDAT-KTGTEIRFWPSEQTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNN 279
               Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ CFTNN
Sbjct: 178 EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+F
Sbjct: 238 IPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++T
Sbjct: 298 SSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILN
Sbjct: 358 RRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLT
Sbjct: 418 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLT 477

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FFFRQMP LI  G++YI +PPL+ + +GK  QY+KDE +L  YL  Q+L           
Sbjct: 478 FFFRQMPELIERGYVYIAQPPLFKVKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQGA 537

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASK 637
             +S   L   +    +++ ++      +      + +   + + E   D+         
Sbjct: 538 PGMSGEPLERLVTQYREVEAIVARLEQRYPTHITNRMLYHPMISNEMLADEAKMKEWIDA 597

Query: 638 LANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI 692
             + L  +         E             +     G+   ++       S   +    
Sbjct: 598 FIHELVELENSGVLYSGEPVLDPERKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAK 657

Query: 693 FSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWE 752
               +E        +       ++      LD   S  ++G+ +QRYKGLGEMN  QLWE
Sbjct: 658 LGAALEGLIEVGGYVQRGDRVKEVGSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWE 717

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           TT++P++R +L+V I DA  AD LF+ LMGD+VEPRREFI+ N+L
Sbjct: 718 TTMDPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEANAL 762


>gi|121891|sp|P22118|GYRB_NEIGO RecName: Full=DNA gyrase subunit B
 gi|150257|gb|AAA88327.1| DNA gyrase [Neisseria gonorrhoeae]
          Length = 781

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/803 (47%), Positives = 515/803 (64%), Gaps = 24/803 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y ADSIQ+L+GL+AV KRP MYIGDT   SGLHHM++EVLDNAIDE+L G+
Sbjct: 1   MTEQKHE-EYGADSIQVLEGLEAVPKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+  SYK+SGGL
Sbjct: 60  CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+ L I R+G  + + F+ G  + PL + G + +  GT V FL  ++
Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F   ++++D L  R+RELSFLN+ V I L D+R  +    +    GG+  FV Y++R K
Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  +TR I
Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVS E+  VV   +
Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P EAKII  K++DA+  R AAR+AR++TRRKG++D   LPGKLADC E+
Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARARQAARKAREITRRKGLMDGLGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEG+SAGGSA QGR R+ QAILPL+GKILNV               TLITA
Sbjct: 417 DPALSELYLVEGNSAGGSAMQGRDRKFQAILPLKGKILNVA--------------TLITA 462

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI +PP
Sbjct: 463 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGYIYIAQPP 522

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY    GK  +Y+KDE   + +L+  +L +   +       I   +L +     L    +
Sbjct: 523 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 580

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I+      D+  +   + +   +  S +  + ++A  L+  L+      E+      +  
Sbjct: 581 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHQF 639

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            I + R   G      +E   + S   +     +  ++        L    ++       
Sbjct: 640 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 698

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I D   AD++F  L
Sbjct: 699 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDRI-ADEVFVTL 757

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGDEVEPRR FI+ N+L +  +D
Sbjct: 758 MGDEVEPRRAFIENNALIAQNID 780


>gi|15892807|ref|NP_360521.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7]
 gi|20138262|sp|Q92H87|GYRB_RICCN RecName: Full=DNA gyrase subunit B
 gi|15619989|gb|AAL03422.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7]
          Length = 807

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/809 (52%), Positives = 570/809 (70%), Gaps = 8/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+       SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DNAIDESL
Sbjct: 1   MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ VTLN +GS TVSDNGRGIP ++H EEGISAAEVIMT+LHAGGKF+Q +YKV+
Sbjct: 61  AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHGEEGISAAEVIMTQLHAGGKFDQNAYKVA 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y M F NGI + PL V     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+  +F++ T++HRLREL+FLNS V+I L+D R  E +E+  +Y GGIEA+V Y+D
Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVEFYYTGGIEAYVKYID 240

Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +     +  + +   IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP EAK I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG  + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI
Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G +  Y+K+E++L+DYLI  ++++      D K  +  ++L   I+  +K
Sbjct: 540 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDDKERLVGDNLEELINKVVK 598

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ + N +  +  +     K  + LN + +  +K+ W  
Sbjct: 599 FNGLLDHASKKFNRSITEILAINDLLNNKIFEPESDLRLKKALDVLNSLEDSPDKTNWEV 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I   R +RG++E  +L    + SF       F+  I + +   L LI    +  
Sbjct: 659 LKHENKIEFFRFSRGLKESKILLKEQLESFEFVQISKFALTIFDIFSKQLKLIVKSQEFD 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I  P  LL+TI   G++GI++QR+KGLGEMN+ QLWETTL+P  R+LL+V++ +  +A+ 
Sbjct: 719 ILTPSQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 778

Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +FS LMGD VEPRR FIQ N+L    LD+
Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVVNLDV 807


>gi|238650642|ref|YP_002916494.1| DNA gyrase subunit B [Rickettsia peacockii str. Rustic]
 gi|238624740|gb|ACR47446.1| DNA gyrase subunit B [Rickettsia peacockii str. Rustic]
          Length = 807

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/809 (52%), Positives = 568/809 (70%), Gaps = 8/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+       SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DNAIDESL
Sbjct: 1   MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q +YKV+
Sbjct: 61  AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNAYKVA 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y M F NGI + PL V     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+  +F++ T++HRLREL+FLNS V++ L+D R  E +E+  +Y GGIEA+V Y+D
Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKLLLVDNRFEEVKEVEFYYTGGIEAYVKYID 240

Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +     +  + +   IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP EAK I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIITKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG  + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI  G+LYI
Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELIKKGYLYI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G +  Y+K+E++L+DYLI  ++++      D K  +  ++L   I+  +K
Sbjct: 540 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDDKEQLVGDNLEELINKVVK 598

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ + N +     +     K  + LN + +  +K+ W  
Sbjct: 599 FNGLLDHASKKFNRSITEILAINDLLNNKIFDPESDLRLKKALDVLNSLEDSPDKTNWEV 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I   R +RG++E  +L    + SF        +  I + +   L LI    +  
Sbjct: 659 LKHENKIEFFRFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFSKQLKLIVKSQEFD 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I  P  LL+TI   G++GI++QR+KGLGEMN+ QLWETTL+P  R+LL+V++ +  +A+ 
Sbjct: 719 ILTPSQLLNTIIKCGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 778

Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +FS LMGD VEPRR FIQ N+L    LD+
Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVVNLDV 807


>gi|209542192|ref|YP_002274421.1| DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529869|gb|ACI49806.1| DNA gyrase, B subunit [Gluconacetobacter diazotrophicus PAl 5]
          Length = 818

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/805 (51%), Positives = 560/805 (69%), Gaps = 12/805 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S YDA SI +LKGLDAV+KRP MYIGDTD  SGLHHM +E++DNA+DE+  G+A    V
Sbjct: 18  DSDYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGFATSCIV 77

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TLN DGS TV DNGRGIPTD+H EEG+SAAEV++T+LHAGGKFNQ SYKVSGGLHGVG +
Sbjct: 78  TLNGDGSVTVRDNGRGIPTDMHAEEGVSAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAA 137

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W+++RI R G  + + F +G  D PL V G +    GT+VTF PS   F+  +
Sbjct: 138 VVNALSEWMEVRIWRNGQEHMIRFRHGERDAPLTVVGPSDEPRGTQVTFKPSIGTFTRVE 197

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F +  L+ R+REL+FLNS +QI L D+R    RE    ++GG+ AFV +LDR K  ++  
Sbjct: 198 FEFAILERRMRELAFLNSGLQIVLRDERHTPTREENFHFQGGLAAFVEWLDRGKSSIVDP 257

Query: 247 PI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           PI   +Q   + I ++ A+ WND +HE +LCFTNNIPQ+DGG+HL+G R ALTR +  Y 
Sbjct: 258 PITGSLQNEDNGIKVEFALTWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRVVGKYA 317

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E +   K   +S++G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VV +  +D +
Sbjct: 318 ESNASKKDS-QSLVGEDMREGMTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAASDMI 376

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + W E HP EA+ IV KV+DA+  R+AARRAR+LTRRKGVLD++SLPGKLADC ERDP +
Sbjct: 377 AHWFETHPKEARAIVAKVMDAAAAREAARRARELTRRKGVLDVSSLPGKLADCQERDPAR 436

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGG+AKQGR R  QAILPL+GKILNVERARFD+ML S E+GTLITALGTG
Sbjct: 437 SELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSAEVGTLITALGTG 496

Query: 485 IGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           IG+       F I+KLRYH+++IMTDADVDG+HIRTLLLTFFFRQMP LI  G LYI +P
Sbjct: 497 IGRGDVDQGGFSIDKLRYHRVVIMTDADVDGSHIRTLLLTFFFRQMPELIERGHLYIAQP 556

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY   RG   +Y+KD+ +LE YL++++L+     + D   V++  DL   +     + +
Sbjct: 557 PLYRAKRGNDERYLKDDAALEQYLLDKALANASLRYGD-GRVVAGADLAADMAFLRDVTR 615

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
            ++          +EQA I+G  N ++      +  + L  +L+ ++  +E+ W    + 
Sbjct: 616 ALQRLTLRAPLWILEQAAIAGALNADT--ATVQTRVAALQAQLDEVSLPNERGWKVVASA 673

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             + + R  RGV E + L+ +++ S   ++    + R+  ++   + L  +       GP
Sbjct: 674 DGLEMARSVRGVGEVYRLDPATLRSAEVRWLAERAERLATDFAGKVELTLDTTTRAADGP 733

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            SL + I + GR+G+S+ R+KGLGEMN +QLWETTL+P  R+LL+VK+ D   A  +FS 
Sbjct: 734 ASLYERILAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVKVGDVENAAQVFST 793

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGD VEPRR+FI  N+L    LD+
Sbjct: 794 LMGDVVEPRRDFIVGNALKVANLDV 818


>gi|162147558|ref|YP_001602019.1| DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786135|emb|CAP55717.1| putative DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 818

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/805 (51%), Positives = 561/805 (69%), Gaps = 12/805 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S YDA SI +LKGLDAV+KRP MYIGDTD  SGLHHM +E++DNA+DE+  G+A    V
Sbjct: 18  DSDYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGFATSCIV 77

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TLN DGS TV DNGRGIPTD+H EEG+SAAEV++T+LHAGGKFNQ SYKVSGGLHGVG +
Sbjct: 78  TLNGDGSVTVRDNGRGIPTDMHAEEGVSAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAA 137

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W+++RI R G  + + F +G  D PL V G +    GT+VTF PS   F+  +
Sbjct: 138 VVNALSEWMEVRIWRNGQEHMIRFRHGERDAPLTVVGPSDEPRGTQVTFKPSIGTFTRVE 197

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F +  L+ R+REL+FLNS +QI L D+R    RE    ++GG+ AFV +LDR K  ++  
Sbjct: 198 FEFAILERRMRELAFLNSGLQIVLRDERHTPTREENFHFQGGLAAFVEWLDRGKSSIVDP 257

Query: 247 PI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           PI   +Q   + I ++ A+ WND +HE +LCFTNNIPQ+DGG+HL+G R ALTR +  Y 
Sbjct: 258 PITGSLQNEDNGIKVEFALTWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRVVGKYA 317

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E +   K   +S++G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VV +  +D +
Sbjct: 318 ESNASKKDS-QSLVGEDMREGMTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAASDMI 376

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + W E HP EA+ IV KV+DA+  R+AARRAR+LTRRKGVLD++SLPGKLADC ERDP +
Sbjct: 377 AHWFETHPKEARAIVAKVMDAAAAREAARRARELTRRKGVLDVSSLPGKLADCQERDPAR 436

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGG+AKQGR R  QAILPL+GKILNVERARFD+ML S E+GTLITALGTG
Sbjct: 437 SELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSAEVGTLITALGTG 496

Query: 485 IGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           IG+       F I+KLRYH+++IMTDADVDG+HIRTLLLTFFFRQMP LI  G LYI +P
Sbjct: 497 IGRGDVDQGGFSIDKLRYHRVVIMTDADVDGSHIRTLLLTFFFRQMPELIERGHLYIAQP 556

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY   RG   +Y+KD+ +LE YL++++L+     + D   V++  DL   +     + +
Sbjct: 557 PLYRAKRGNDERYLKDDAALEQYLLDKALANASLRYGD-GRVVAGADLAADMAFLRDVTR 615

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
            ++          +EQA I+G  N ++      +  + L  +L+ ++  +E+ W    + 
Sbjct: 616 ALQRLTLRAPLWILEQAAIAGALNADT--ATVQTRVAALQAQLDEVSLPNERGWKVVASA 673

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             + + R  RGV E + L+ +++ S   ++    ++R+  ++   + L  +       GP
Sbjct: 674 DGLEMARSVRGVGEVYRLDPATLRSAEVRWLVERADRLATDFAGKVELTLDSTTRAADGP 733

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            SL + I + GR+G+S+ R+KGLGEMN +QLWETTL+P  R+LL+VK+ D   A  +FS 
Sbjct: 734 ASLYERILAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVKVGDVENAAQVFST 793

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGD VEPRR+FI  N+L    LD+
Sbjct: 794 LMGDVVEPRRDFIVGNALKVANLDV 818


>gi|51473761|ref|YP_067518.1| DNA gyrase subunit B [Rickettsia typhi str. Wilmington]
 gi|81826298|sp|Q68WF6|GYRB_RICTY RecName: Full=DNA gyrase subunit B
 gi|51460073|gb|AAU04036.1| DNA gyrase [Rickettsia typhi str. Wilmington]
          Length = 807

 Score =  846 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/809 (52%), Positives = 572/809 (70%), Gaps = 8/809 (0%)

Query: 1   MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS   +    SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DN+IDE+L
Sbjct: 1   MSGIEEKCNESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D+I VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q SYK+S
Sbjct: 61  AGYCDLIRVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQHSYKIS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y + F NGI + PL +     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYFIRFNNGITEAPLSIVKENIDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S  IF+  +F++ T++HRLREL+FLNS V+I LID R  E +++  FY GGIEA+V Y+D
Sbjct: 181 SVGIFTNIEFDFVTIEHRLRELAFLNSGVKILLIDNRFEEVKKVEFFYTGGIEAYVQYID 240

Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +     +  +     IS++LA+ WND YHEN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAIHPCIVVNTEHVESGISLELAIHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP+EAK I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPIEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKMLSS++IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLSSEQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG  + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI
Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY +  G S  Y+K+E++L++YLI  ++++      D +  +   +L + I+  ++
Sbjct: 540 AQPPLYKVKSGASELYLKNEQALQNYLIKSTINDTKL-ILDGQEQLIGYNLEDLINKVVQ 598

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ +FN +  +  + S   K  + LN + E  +K+    
Sbjct: 599 FNCLLDRASKKFNRSITEILAINDLFNKKIFEPESGSRLQKALDVLNNLEESPDKTNLQV 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I     +RG++   +L    +  F       F+  I + +   L LI  G +  
Sbjct: 659 LKHENRIEFFHFSRGLKNTKILLKEQLELFEFVEISQFALSIFDIFSKRLKLIVKGKEFD 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +  P  LL+TI   G+KGI++QR+KGLGEMN+ QLW+TTL+P  R+LL+V++++  +A+ 
Sbjct: 719 VVTPSQLLNTIIECGKKGITIQRFKGLGEMNSDQLWDTTLDPTKRTLLQVRVSEVDEAEG 778

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +FS LMGD VEPRR FIQ N+L    LDI
Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVMNLDI 807


>gi|121596427|ref|YP_988323.1| DNA gyrase subunit B [Acidovorax sp. JS42]
 gi|120608507|gb|ABM44247.1| DNA gyrase subunit B [Acidovorax sp. JS42]
          Length = 868

 Score =  846 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/845 (46%), Positives = 528/845 (62%), Gaps = 52/845 (6%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y   +IQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I V
Sbjct: 28  SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 87

Query: 67  TLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           T++ D S +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLH
Sbjct: 88  TIHTDNSISVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 146

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169
           GVGVS VNALS  L+L ++R+G  +++ F  G++             +P+ V G      
Sbjct: 147 GVGVSCVNALSKKLRLTVRRDGQTHQLEFAQGVVQNRLIEVVDGVEVSPMKVIGPTE-KR 205

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GTEV FLP ++IF   + F+Y+ L  RLRELSFLN+ V+I LID+R+ +         GG
Sbjct: 206 GTEVRFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLIDERTGKE--DDFSGAGG 263

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTN 278
           ++ FV +++  KK L  +P    GSR            I +++AM+WNDGY+E VLCFTN
Sbjct: 264 VKGFVEFINGTKKVLHPTPFHATGSRPAETYGGIPGTEIGVEVAMQWNDGYNEQVLCFTN 323

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+
Sbjct: 324 NIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPK 383

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++
Sbjct: 384 FSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPNDAKILCGKIVEAARAREAARKAREM 443

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKIL
Sbjct: 444 TRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIL 503

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLRYHKIIIMTDADV 508
           NVE+AR++K+LSS EI TLITALGTGIG+          D FD+ KLRYH+IIIMTDADV
Sbjct: 504 NVEKARYEKLLSSNEIVTLITALGTGIGKAAVESGKSGADDFDVAKLRYHRIIIMTDADV 563

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +L
Sbjct: 564 DGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDAAALDTFLLRVAL 623

Query: 569 SEEIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
           +         +   ++ ++L          +++I       D   +       VFN ++ 
Sbjct: 624 NHASITTGGDQPRTLAGDELAQLARTHQHAEQVIARLSAFMDAEALRAVADGVVFNLDTL 683

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSI----NNSDILVKRIARGVQEQFVLEGSSIF 683
           Q+   S     A               G I    +   + + R   G  +  ++    + 
Sbjct: 684 QDAEASAVQLQAKLRELNTNGVPADVAGEIDPRTDKPILRISRHHHGNIKSSLITQDFVA 743

Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRY 739
                     +            +         + K+      +  + S   +  S QRY
Sbjct: 744 GDDYAALAQAAESFRGLIQEGAKVTRGEGEKAKEEKVGDFRQAMAWLISEAERTTSRQRY 803

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L +
Sbjct: 804 KGLGEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRA 863

Query: 800 -ALDI 803
             LD+
Sbjct: 864 GNLDV 868


>gi|302341697|ref|YP_003806226.1| DNA gyrase, B subunit [Desulfarculus baarsii DSM 2075]
 gi|301638310|gb|ADK83632.1| DNA gyrase, B subunit [Desulfarculus baarsii DSM 2075]
          Length = 795

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/804 (45%), Positives = 510/804 (63%), Gaps = 10/804 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+++   ++Y AD I++L+GL+AV+KRP+MYIG T    GLHH++YEV+DN++DE++ G+
Sbjct: 1   MTED--RTNYTADKIKVLEGLEAVRKRPAMYIGSTS-VDGLHHLVYEVVDNSVDEAMAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ D S +V D+GRGIP D H  EG+SA +V+MT+LHAGGKF+ K+Y+V+GGL
Sbjct: 58  CENIRVVIHADNSVSVVDDGRGIPVDFHAHEGMSAVQVVMTKLHAGGKFDDKAYQVAGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL++ I R+G +Y   ++ G   + L V G      GT+VTF P  +
Sbjct: 118 HGVGVSVVNALSQWLEVEISRDGKVYHQRYMRGKPVSELEVIGKT-RRRGTKVTFKPDEE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD L  R+REL+FLN  ++I L D+RS E    +  YKGGI  FV Y+ R+ 
Sbjct: 177 IFETTEYSYDILVARMRELAFLNRGLRIDLADERSDEE--KSFHYKGGINEFVEYISRNS 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL   PI + G +  + +++A+++ D Y E +  F NNI  K+GGTHL+G ++ALTR I
Sbjct: 235 APLHPKPIYLAGQKGMVQVEIALQYADSYKERLFSFANNINTKEGGTHLTGFKAALTRTI 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+  +    K K    GDD REG   V+S+++P P+F  QTK KL +SEV+ +VE  V
Sbjct: 295 NAYIANN--FPKIKTPPSGDDAREGLFGVISVRIPQPQFEGQTKMKLGNSEVKGLVEQIV 352

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ND L+ + EE+P  A+ +V KV +A+  R+AAR+AR+L RRKGVL   SLPGKLADCS R
Sbjct: 353 NDQLATYFEENPAVARRVVDKVTEAARAREAARKARELVRRKGVLGEHSLPGKLADCSNR 412

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D    ELFLVEGDSAGGSAKQ R R  QAILPL+GKILNVE+ARF KM+ + EIGT+ITA
Sbjct: 413 DATVCELFLVEGDSAGGSAKQARDRNFQAILPLKGKILNVEKARFHKMIENAEIGTIITA 472

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ F++ KLRYHKI+IMTDADVDG+HIRTL+LTFFFRQMP LI  G LYI +PP
Sbjct: 473 LGAGIGEEDFNLAKLRYHKIVIMTDADVDGSHIRTLILTFFFRQMPELIEAGHLYIAQPP 532

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I  GK   Y+KDE+SL   L+ ++ +E       +   +S   L + ++      + 
Sbjct: 533 LYRIVDGKKENYIKDEQSLRSMLLERACAEATLEVPATGQSVSGLRLISHMNTVGAYLEA 592

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           +         T   QAV+       +       +     +         +  +    +  
Sbjct: 593 LDRLRRRGYHTPALQAVLRVGARSRNIFSDQNRVKELSDSLAQHDLIIGDIPFDEEHSLY 652

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           +I V        +   +    + S           ++         L  NG+  +I    
Sbjct: 653 EIQVS-CLGDAAKCAPISWELVSSADYARLHALHQQLGGGDAGPFILRKNGEVSQIATIE 711

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            LL  +   G KG+ +QRYKGLGEMN  QLW+TT++P+ R+LL+VK+ DA  AD +F+ L
Sbjct: 712 GLLSRLLEDGAKGLGLQRYKGLGEMNPEQLWQTTMDPERRTLLQVKVDDAIAADTMFATL 771

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+VEPR+EFI EN+L + ALDI
Sbjct: 772 MGDQVEPRKEFIIENALEARALDI 795


>gi|222109228|ref|YP_002551492.1| DNA gyrase subunit B [Acidovorax ebreus TPSY]
 gi|221728672|gb|ACM31492.1| DNA gyrase, B subunit [Acidovorax ebreus TPSY]
          Length = 868

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/845 (46%), Positives = 528/845 (62%), Gaps = 52/845 (6%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y   +IQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I V
Sbjct: 28  SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 87

Query: 67  TLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           T++ D S +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLH
Sbjct: 88  TIHTDNSISVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 146

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169
           GVGVS VNALS  L+L ++R+G  +++ F  G++             +P+ V G +    
Sbjct: 147 GVGVSCVNALSKKLRLTVRRDGQTHQLEFSKGVVQNRLIEIVDGFEVSPMKVIGPSE-KR 205

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GTEV FLP ++IF    DF+Y+ L  RLRELSFLN+ V+I LID+R+ +         GG
Sbjct: 206 GTEVRFLPDTEIFKENSDFHYEILAKRLRELSFLNNGVRIRLIDERTGKE--DDFSGAGG 263

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTN 278
           ++ FV +++  KK L  +     G+R            I +++AM+WNDGY+E VLCFTN
Sbjct: 264 VKGFVEFINGTKKVLHPTAFHATGARPAETYGGIPGTEIGVEVAMQWNDGYNEQVLCFTN 323

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+
Sbjct: 324 NIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPK 383

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++
Sbjct: 384 FSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPNDAKILCGKIVEAARAREAARKAREM 443

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKIL
Sbjct: 444 TRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIL 503

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLRYHKIIIMTDADV 508
           NVE+AR++K+LSS EI TLITALGTGIG+          D FD+ KLRYH+IIIMTDADV
Sbjct: 504 NVEKARYEKLLSSNEIVTLITALGTGIGKAAVESGKSGADDFDVAKLRYHRIIIMTDADV 563

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +L
Sbjct: 564 DGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDAAALDTFLLRVAL 623

Query: 569 SEEIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
           +         +   ++ +DL          +++I       D   +       VFN ++ 
Sbjct: 624 NHASITTSGDQPRTLAGDDLAQLARTHQHAEQVIARLSAFMDAEALRAVADGVVFNLDTL 683

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSI----NNSDILVKRIARGVQEQFVLEGSSIF 683
           Q+   S     A               G I    +   + + R   G  +  ++    + 
Sbjct: 684 QDAEASAVQLQAKLRELNTNGVPADVAGEIDPRTDKPILRISRHHHGNIKSSLITQDFVA 743

Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRY 739
                     +            +         + K+      +  + S   +  S QRY
Sbjct: 744 GDDYAALAQAAESFRGLIQEGAKVTRGEGEKAKEEKVGDFRQAMAWLISEAERTTSRQRY 803

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L +
Sbjct: 804 KGLGEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRA 863

Query: 800 -ALDI 803
             +D+
Sbjct: 864 GNIDV 868


>gi|157828742|ref|YP_001494984.1| DNA gyrase subunit B [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933470|ref|YP_001650259.1| DNA gyrase subunit B [Rickettsia rickettsii str. Iowa]
 gi|157801223|gb|ABV76476.1| DNA gyrase subunit B [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908557|gb|ABY72853.1| DNA gyrase subunit B [Rickettsia rickettsii str. Iowa]
          Length = 807

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/809 (52%), Positives = 570/809 (70%), Gaps = 8/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+       SSY ADSI++LKGL+AVKKRP MYIGD    SGLHHMIYEV+DNAIDESL
Sbjct: 1   MSEIEKKFNESSYGADSIKVLKGLEAVKKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q +YKV+
Sbjct: 61  AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNAYKVA 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y M F NGI + PL V     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+  +F++ T++HRLREL+FLNS V+I L+D R  E +E+  +Y GGIEA+V Y+D
Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVEFYYTGGIEAYVKYID 240

Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +     +  + +   IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP EAK I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG  + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP+LI+ G+LYI
Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPALINKGYLYI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G +  Y+K+E++L+DYLI  ++++      D K  +  ++L   I+  +K
Sbjct: 540 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDDKEQLVGDNLEELINKVVK 598

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ + N +     +     K  + LN + +  +K+ W  
Sbjct: 599 FNGLLDHASKKFNRSITEILAINDLLNNKIFDPESDLRLKKALDVLNSLEDSPDKTNWEV 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I   R +RG++E  +L    + SF        +  I + +   L LI    +  
Sbjct: 659 LKHENKIEFFRFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFSKQLKLIVKSQEFD 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I  P  LL+TI   G++GI++QR+KGLGEMN+ QLWETTL+P  R+LL+V++ +  +A+ 
Sbjct: 719 ILTPSQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 778

Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +FS LMGD VEPRR FIQ N+L    LD+
Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVVNLDV 807


>gi|73667042|ref|YP_303058.1| DNA gyrase subunit B [Ehrlichia canis str. Jake]
 gi|72394183|gb|AAZ68460.1| DNA gyrase subunit B [Ehrlichia canis str. Jake]
          Length = 798

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/809 (49%), Positives = 550/809 (67%), Gaps = 27/809 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI +LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DN+IDE+L G+ + I + 
Sbjct: 2   DNYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDIV 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V+DNGRGIP D+H++EG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVG+SV
Sbjct: 62  IQSDGSVSVTDNGRGIPVDMHEDEGMSAAEVIMTQLHAGGKFDHSSYKVSGGLHGVGISV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS+WL+L I R G  Y M F +G+   PL V G      GT +TFLPS +IFS  +F
Sbjct: 122 VNALSTWLELTIWRNGKEYFMRFEDGVTVKPLSVVGENTYKKGTRITFLPSKNIFSSVNF 181

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK----------GGIEAFVSYLD 237
           NY TL+ R+RELSFLNSS+ I+L D R  +    +  ++           G   FV YLD
Sbjct: 182 NYSTLESRVRELSFLNSSININLKDLRGAQVLNSSFGFRDNSKVSDASDKGTSGFVKYLD 241

Query: 238 RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           R+K  +    + I+G      IS++L+M WND Y+EN+LCFTNNI Q+DGGTHL+G RSA
Sbjct: 242 RNKTAVT-KIVHIEGIVLEHGISLELSMHWNDSYYENMLCFTNNIRQRDGGTHLAGFRSA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR I +Y       KK K S++G+D REG T VLSIK+PDP+FSSQTK+KLVSSE R+V
Sbjct: 301 MTRCINNYATNEGFLKKAKVSILGEDVREGLTCVLSIKLPDPKFSSQTKDKLVSSEARTV 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ V + L+   E +P  A  I+++++ ++  R+AAR+AR+L + K   D   LPGKLA
Sbjct: 361 VENIVYEKLTNIFETNPKLAASIIERIIRSAKGREAARKARELIKSKNGFDFTILPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+ P+ SELF+VEG+SAGGSAKQGR R +QA+L L+GKILNVERA  D++LSS EI 
Sbjct: 421 DCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSAEIA 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +LITA+G+ IG ++FDI K+RYHK+IIMTDADVDG+HIRTLLLTFFFR M  +I  G+LY
Sbjct: 481 SLITAIGSNIGTENFDIEKIRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREVIERGYLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY +T+ K   Y+K+++ L DY+I+ ++ +            S  DL   +   +
Sbjct: 541 IAQPPLYKVTKHKKEFYIKNDDMLHDYIISNAIKDLTL---TGTNTYSGEDLSQILHQCM 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            I K+ K +     ++ +E  +I         ++ +   A  ++  LN +  + E  W  
Sbjct: 598 NISKITKSYDRIIPQSVLESLII-------FFKKHSFDSADAISEHLNNVFCEYE--WSV 648

Query: 656 SINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            I   D I + R++ G+ +++ ++ + + S   +      + I+E + ++L L    + I
Sbjct: 649 EIPEKDKISIFRLSHGLVDKYYIDNTIMNSDEIRQVIHICDGIDEIFNSMLILSTKDNNI 708

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           KI  P SL+D I   G+K +++QR+KGLGEMN+ QLW+TTLNP+TR+LL++KI+D   AD
Sbjct: 709 KINSPTSLVDNIIEFGKKDMTLQRFKGLGEMNSDQLWDTTLNPETRTLLKLKISDCEAAD 768

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            +FS LMGD VEPRR+FI  N+L    +D
Sbjct: 769 SIFSVLMGDFVEPRRDFINNNALNVQNID 797


>gi|95929989|ref|ZP_01312729.1| DNA gyrase, B subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95133958|gb|EAT15617.1| DNA gyrase, B subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 791

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/801 (48%), Positives = 531/801 (66%), Gaps = 15/801 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A++I++L+GL AV+KRP+MYIG T  + GLHH++YEV+DN+IDE+L G+ D + V
Sbjct: 2   ENNYSAENIKVLEGLTAVRKRPAMYIGSTSSQ-GLHHLVYEVVDNSIDEALAGFCDSVYV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TLN+DGS TV DNGRGIP D H  E  SAAEV+MT LHAGGKF+  +YKVSGGLHGVGVS
Sbjct: 61  TLNVDGSVTVEDNGRGIPVDWHATENKSAAEVVMTVLHAGGKFDSDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSS L+L I+R G IYE ++  GI    L          GT++TF P + IF   +
Sbjct: 121 VVNALSSKLELEIRRNGKIYEQTYETGIPKTDLKEVSDT-IKKGTKITFWPDASIFETVE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++Y+ L  RLREL+FLN+ V++++ D R+ + +E   +Y+GGI +FV YL+R K PL  +
Sbjct: 180 YSYEVLSKRLRELAFLNAGVRVTITDDRTEKVQE--FYYEGGISSFVEYLNRAKNPLHNN 237

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I   G ++ + I++A ++NDGY E +  F NNI   +GGTHL G ++ALTR + +Y   
Sbjct: 238 IIFFNGEKEGVQIEIAFQYNDGYDEKIYTFANNINTHEGGTHLVGFKAALTRTMNAYATA 297

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K  K SV GDD REG  +V+S+K+PDP+F  QTK KL +SE++  VE+ +N+ L+ 
Sbjct: 298 NNLLKNIKASVSGDDLREGMAAVISVKVPDPQFEGQTKTKLGNSEIKGYVETLINEKLAV 357

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P  AK I++K ++A+  R+AAR+ARDLTRRKG LD  SLPGKLADC E+DP  SE
Sbjct: 358 YLEENPQVAKKILEKGIEAARAREAARKARDLTRRKGALDGLSLPGKLADCQEKDPALSE 417

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R NQAILPL+GKILNVE++RFDKML+S EI TLITA+G GIG
Sbjct: 418 IYIVEGDSAGGSAKQGRDRSNQAILPLKGKILNVEKSRFDKMLTSNEIRTLITAMGAGIG 477

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI K+RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP +I  G+LYI +PPLY + +
Sbjct: 478 KDDFDIAKIRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPEIIERGYLYIAQPPLYKLKK 537

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK   Y+KDEE+L DYL++  +        +   +I    +   + + +  D L +    
Sbjct: 538 GKKEIYLKDEETLLDYLLSIGVENCSIDMNNGDKIIRGKQIIPTLKNIIDYDNLFEKLIH 597

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
              K  + +  +        +  +++   + L N L   A  +E  +    N + IL   
Sbjct: 598 KGIKRELLKIFVENKIQFNFEDLVDL---NPLVNTLQQAASHAE--FTLLENPARILFTL 652

Query: 667 -IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK--ITGPCSLL 723
              R   +Q  L+   + S   K       ++       + +I   +K    +     LL
Sbjct: 653 GNVRARIDQKSLDI--LSSHEYKLLLQSFKQLITITKEDVVVIQQEEKEPVSVNDREELL 710

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D   S  +KG  +QRYKGLGEMN  QLWETT++P+ R LL+VKI DA   D++F+ LMGD
Sbjct: 711 DFFLSRAKKGQYIQRYKGLGEMNPEQLWETTMDPEKRVLLQVKIEDAVATDNIFTVLMGD 770

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +VEPRREFI+ N+L    LDI
Sbjct: 771 QVEPRREFIENNALNVSNLDI 791


>gi|296115232|ref|ZP_06833873.1| DNA gyrase, B subunit [Gluconacetobacter hansenii ATCC 23769]
 gi|295978333|gb|EFG85070.1| DNA gyrase, B subunit [Gluconacetobacter hansenii ATCC 23769]
          Length = 839

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/804 (52%), Positives = 560/804 (69%), Gaps = 12/804 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + YDA SI +LKGLDAV+KRP MYIGDTD  SGLHHM +E++DNA+DE+  GYA    VT
Sbjct: 40  ADYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGYATTCIVT 99

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV DNGRGIPTD+H EEGISAAEV++T+LHAGGKFNQ SYKVSGGLHGVG +V
Sbjct: 100 LNGDGSVTVRDNGRGIPTDMHHEEGISAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAAV 159

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS W+++RI R G  + + F  G  D PL V G +    GT+VTF PS++ F++ +F
Sbjct: 160 VNALSEWMEVRIWRNGQEHMIRFRAGERDAPLSVVGDSDEPRGTQVTFKPSAETFAIVEF 219

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            +  L+ RLREL+FLNS + I L D+R    RE    Y+GG+ AFV +LD  K P+++ P
Sbjct: 220 QFSVLERRLRELAFLNSGLAIILRDERHTPVREEAFHYEGGLSAFVEWLDHGKTPIVEPP 279

Query: 248 I--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           I   +Q   + I ++ A+ WND +HE +LCFTNNIPQ+DGG+HL+G R ALTR +  Y E
Sbjct: 280 ITGSLQNEDNGIKVEFALTWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRIVGRYAE 339

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K    ++ G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VV +   D +S
Sbjct: 340 ANASKKDS-HALAGEDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAAADMIS 398

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            W E HP EA+ IV KV+DA+  R+AARRAR+LTRRKGVLDI+SLPGKLADC ERDP KS
Sbjct: 399 HWFETHPKEARQIVAKVMDAAAAREAARRARELTRRKGVLDISSLPGKLADCQERDPAKS 458

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGG+AKQGR R  QAILPL+GKILNVERARFD+ML S EIGTLITALGTGI
Sbjct: 459 ELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSAEIGTLITALGTGI 518

Query: 486 GQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           G+       F I KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP LI NG+LYI +PP
Sbjct: 519 GRGDVEHGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPELIENGYLYIAQPP 578

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY   RG   +Y+KD+ +LE YL++++L+     + D + V +   +   +     + + 
Sbjct: 579 LYRAKRGNDERYLKDDAALEQYLLDKALAHATLRYGDGREV-TGEAIHTDVAFIRDVARA 637

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           +           +EQA I+G  +          +A  L +RL+ ++ +SE+ W  + +  
Sbjct: 638 LSRLAVRAPVWVLEQAAIAGALSANPAATPERVIA--LQSRLDAVSMESERGWKVAASAD 695

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            + + R  RGV E + L+ +S+ S   ++      RI  ++ + + L  +   I + GP 
Sbjct: 696 GLEMARSVRGVGEVYRLDPASLRSAEVRWLAEHHGRIATDFDSKVELSLDSQTIALDGPA 755

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           S+ + I + GR+G+S+ R+KGLGEMN +QLWETTL+P  R+LL+V++ D   A  +FS L
Sbjct: 756 SVYERIIAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVRVGDVENAAQVFSTL 815

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD VEPRR+FI  N+L    LD+
Sbjct: 816 MGDVVEPRRDFIVGNALKVANLDV 839


>gi|94308948|ref|YP_582158.1| DNA gyrase subunit B [Cupriavidus metallidurans CH34]
 gi|93352800|gb|ABF06889.1| DNA gyrase, subunit B [Cupriavidus metallidurans CH34]
          Length = 841

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/845 (46%), Positives = 523/845 (61%), Gaps = 46/845 (5%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+D  +    +SY A SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EVLDN+IDE+L
Sbjct: 1   MTDQQKPQQENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
            GY   I VT++ D S ++ DNGRGIP     D   E   SAAE+ MT LHAGGKFNQ S
Sbjct: 61  AGYCTEIQVTIHSDNSISIVDNGRGIPPAVKFDDKHEPKRSAAEIAMTELHAGGKFNQNS 120

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------D 156
           YKVSGGLHGVGVS VNALS WL+L ++R+G +  + F  G +                  
Sbjct: 121 YKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVNLIEFAKGEVQNRVIETVTGPDGQPVEV 180

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +P+ V G A +  GTEV FL   +IF+  +F+Y+ L  R+RELSFLN+ V I L+D+R+ 
Sbjct: 181 SPMKVIG-ATDKRGTEVHFLADEEIFTNVEFHYEVLSKRIRELSFLNNGVHIKLVDQRTG 239

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG++ FV Y++R K  L  +       +D IS+++AM+WNDGY+E VLCF
Sbjct: 240 KE--EDFAFSGGVKGFVEYINRSKTTLHPNIFYANAEKDGISVEVAMQWNDGYNEQVLCF 297

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K    GDD REG   VLS+K+P+
Sbjct: 298 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKAKVETSGDDMREGLACVLSVKVPE 357

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K++DA+  R+AAR+AR
Sbjct: 358 PKFSSQTKDKLVSSEVRLPVEELVGKALTDFLLETPNDAKIICGKIVDAARAREAARKAR 417

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGV+D   LPGKLADC E+DP  SELFLVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 418 EMTRRKGVMDGMGLPGKLADCQEKDPAMSELFLVEGDSAGGSAKQGRDRKFQAILPLKGK 477

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSSQE+ TLITALGTGIG++ +++ KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 478 ILNVERARFDKMLSSQEVLTLITALGTGIGKEDYNLEKLRYHRIIIMTDADVDGSHIRTL 537

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LLTFF+RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  Y++  ++ +      
Sbjct: 538 LLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDNELNAYMLKLAMEKASLSRP 597

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI-------SGVFNCESDQE 629
           D    I+   L          + +I       D   +            +      S   
Sbjct: 598 DGSE-INGEALTELARQYQLAEGVIGRLSRIVDVDALRAIADGVALDLDNAAAAEASAVA 656

Query: 630 INVSLASKLANRL------NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683
           +   LA   A  L      +         +    +   +++ R   G      ++   + 
Sbjct: 657 LKAKLAEMHAKTLLGAAVNDDGTADVYAQFDEKTDKHRLMIARRHHGNVRLSHVDADFVH 716

Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRY 739
                     +   +        +         +  +      +  + S   +G+S QRY
Sbjct: 717 GADYAALARAATTFQGLIPDGTKVRRGEGEKMREQTVADFHQAMQWLLSEAERGVSRQRY 776

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QL+ETTL+   R LLRV+I DA  AD +F+ LMGDEVEPRR FI+ N+L +
Sbjct: 777 KGLGEMNPEQLFETTLDVTQRRLLRVQIEDAIAADQIFTTLMGDEVEPRRNFIESNALVA 836

Query: 800 -ALDI 803
             +D+
Sbjct: 837 RNIDV 841


>gi|330822656|ref|YP_004385959.1| DNA gyrase subunit B [Alicycliphilus denitrificans K601]
 gi|329308028|gb|AEB82443.1| DNA gyrase, B subunit [Alicycliphilus denitrificans K601]
          Length = 860

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/843 (45%), Positives = 526/843 (62%), Gaps = 53/843 (6%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y   +IQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I VT++
Sbjct: 22  YGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIH 81

Query: 70  MDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            D S +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVG
Sbjct: 82  TDNSISVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVG 140

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTE 172
           VS VNALS  L+L ++R+G  +++ F  G++             +P+ + G      GTE
Sbjct: 141 VSCVNALSKKLRLTVRRDGKTHQLEFSKGVVQNRLIEVVDGFEVSPMKIVGPTE-KRGTE 199

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V FLP ++IF    DF+Y+ L  RLRELSFLN+ V+I LID+R+ +         GG++ 
Sbjct: 200 VRFLPDTEIFKENSDFHYEILAKRLRELSFLNNGVRIRLIDERTGKE--DDFSGAGGVKG 257

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIP 281
           FV +++  KK L  +     GSR            I +++AM+WNDGY+E VLCFTNNIP
Sbjct: 258 FVEFINGTKKVLHPTAFHATGSRPAESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIP 317

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+FSS
Sbjct: 318 QRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVDVSGDDMREGLCCVLSVKVPEPKFSS 377

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++TRR
Sbjct: 378 QTKDKLVSSEVRAPVEDIVAKALTEYLEEKPQDAKILCGKIVEAARAREAARKAREMTRR 437

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE
Sbjct: 438 KGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVE 497

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDG 510
           +AR++K+LSS EI TLITALGTGIG+           D FD  KLRYH+IIIMTDADVDG
Sbjct: 498 KARYEKLLSSNEIITLITALGTGIGKASEDGNGKSGADDFDAAKLRYHRIIIMTDADVDG 557

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD  +L+++L+  +L+ 
Sbjct: 558 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDAAALDNFLLRVALNH 617

Query: 571 EIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
                       ++ ++L          +++I       D   +  A     FN ++ ++
Sbjct: 618 ASISTGGDAPRTLAGDELATLARTHQHAERVIDRLSAFMDAEALRAAADGVAFNLDTLED 677

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSI----NNSDILVKRIARGVQEQFVLEGSSIFSF 685
              S     A               G I    +   + + R   G  +  ++    +   
Sbjct: 678 AQASAVQLQARLRELNTSGVPADVTGEIDPRTDKPILRISRHHHGNIKSSLITQDFVAGD 737

Query: 686 GSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                   +            ++        + KI+     +  +     +  + QRYKG
Sbjct: 738 DYAALAEAAESFRGLIQEGAKVMRGEGEKQKEEKISDFRQAMQWLIGEAERTTARQRYKG 797

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800
           LGEMN  QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L +  
Sbjct: 798 LGEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAGN 857

Query: 801 LDI 803
           +D+
Sbjct: 858 IDV 860


>gi|319790697|ref|YP_004152337.1| DNA gyrase, b subunit [Variovorax paradoxus EPS]
 gi|315593160|gb|ADU34226.1| DNA gyrase, B subunit [Variovorax paradoxus EPS]
          Length = 873

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/848 (45%), Positives = 532/848 (62%), Gaps = 53/848 (6%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + ++SY   SI IL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I
Sbjct: 30  LADTSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDI 89

Query: 65  TVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
            VT++ D S +V+DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGG
Sbjct: 90  VVTIHSDNSISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGG 148

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGN 167
           LHGVGVS VNALS  L+L ++REG I+E+ F  G +             +P+ + G   +
Sbjct: 149 LHGVGVSCVNALSIKLRLIVRREGKIHELEFSRGFVQNRLLETVNGFEVSPMKIIGDT-D 207

Query: 168 DTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             GTEV FLP ++IF   + F+Y+ L  RLRELSFLN+ V+I L+D+R+ +         
Sbjct: 208 KRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNNGVRIRLLDERTGKE--DDFSGA 265

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCF 276
           GG+  FV ++++ K  L  +     G +           +I +++AM+WN GY+E VLCF
Sbjct: 266 GGVRGFVEFINKGKTVLHPNSFYAAGEKPADTYGGIPGTHIGVEVAMQWNSGYNEQVLCF 325

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+P+
Sbjct: 326 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPE 385

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR+ VE  V   L+ +L+E P +AKII  K+++A+  R+AAR+AR
Sbjct: 386 PKFSSQTKDKLVSSEVRAPVEDIVGRLLTDYLQERPNDAKIICGKIVEAARAREAARKAR 445

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGVLD   LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPLRGK
Sbjct: 446 EMTRRKGVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGK 505

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLRYHKIIIMTDA 506
           ILNVE+AR++K+L+S EI T+ITALGTGIG+          D F++ KLRYH+IIIMTDA
Sbjct: 506 ILNVEKARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLRYHRIIIMTDA 565

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK  QY+KD  +L+ +L+  
Sbjct: 566 DVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLKV 625

Query: 567 SLSEEIELF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
           +L +        S   ++ + L          + +I       D   +         + +
Sbjct: 626 ALKDARIETGGASSTTLTGDTLAELARKHQVAESVIARLRNFMDAEALRAIADGVALDLD 685

Query: 626 SDQEINVSLASKLANRLNF----IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
           +      S  +  A         I  +    +    +   + + R   G  +  V+    
Sbjct: 686 TTPAAEASAVALQAKLRELNTTGIPAEVSNEFDARTDKPLLRISRRHHGNIKSSVITQDF 745

Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGD-----KIKITGPCSLLDTIFSIGRKGISM 736
           +           +N       T  +L+  G+     + K+      +  + S   +  S 
Sbjct: 746 VHGADYAALAEAANTFRGLLSTEGALVKRGEGERAKEEKVDDFRQAMKWLISEAERATSR 805

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT++P  R LLRV+I DA +AD +F+ LMGDEVEPRREFI++N+
Sbjct: 806 QRYKGLGEMNPEQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRREFIEQNA 865

Query: 797 LP-SALDI 803
           L  + +D+
Sbjct: 866 LRAANIDV 873


>gi|319760741|ref|YP_004124678.1| DNA gyrase, b subunit [Alicycliphilus denitrificans BC]
 gi|317115302|gb|ADU97790.1| DNA gyrase, B subunit [Alicycliphilus denitrificans BC]
          Length = 860

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/843 (45%), Positives = 526/843 (62%), Gaps = 53/843 (6%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y   +IQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I VT++
Sbjct: 22  YGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIH 81

Query: 70  MDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            D S +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVG
Sbjct: 82  TDNSISVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVG 140

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTE 172
           VS VNALS  L+L ++R+G  +++ F  G++             +P+ + G      GTE
Sbjct: 141 VSCVNALSKKLRLTVRRDGKTHQLEFSKGVVQNRLIEVVDGFEVSPMKIVGPTE-KRGTE 199

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V FLP ++IF    DF+Y+ L  RLRELSFLN+ V+I LID+R+ +         GG++ 
Sbjct: 200 VRFLPDTEIFKENSDFHYEILAKRLRELSFLNNGVRIRLIDERTGKE--DDFSGAGGVKG 257

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIP 281
           FV +++  KK L  +     G+R            I +++AM+WNDGY+E VLCFTNNIP
Sbjct: 258 FVEFINGTKKVLHPTAFHATGARPAESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIP 317

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+FSS
Sbjct: 318 QRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVDVSGDDMREGLCCVLSVKVPEPKFSS 377

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++TRR
Sbjct: 378 QTKDKLVSSEVRAPVEDIVAKALTEYLEEKPQDAKILCGKIVEAARAREAARKAREMTRR 437

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE
Sbjct: 438 KGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVE 497

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDG 510
           +AR++K+LSS EI TLITALGTGIG+           D FD  KLRYH+IIIMTDADVDG
Sbjct: 498 KARYEKLLSSNEIITLITALGTGIGKASEDGNGKSGADDFDAAKLRYHRIIIMTDADVDG 557

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD  +L+++L+  +L+ 
Sbjct: 558 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDAAALDNFLLRVALNH 617

Query: 571 EIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
                       ++ ++L          +++I       D   +  A     FN ++ ++
Sbjct: 618 ASISTGGDAPRTLAGDELATLARTHQHAERVIDRLSAFMDAEALRAAADGVAFNLDTLED 677

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSI----NNSDILVKRIARGVQEQFVLEGSSIFSF 685
              S     A               G I    +   + + R   G  +  ++    +   
Sbjct: 678 AQASAVQLQARLRELNTSGVPADVTGEIDPRTDKPILRISRHHHGNIKSSLITQDFVAGD 737

Query: 686 GSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                   +            ++        + KI+     +  +     +  + QRYKG
Sbjct: 738 DYAALAEAAESFRGLIQEGAKVMRGEGEKQKEEKISDFRQAMQWLIGEAERTTARQRYKG 797

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800
           LGEMN  QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L +  
Sbjct: 798 LGEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAGN 857

Query: 801 LDI 803
           +D+
Sbjct: 858 IDV 860


>gi|328952219|ref|YP_004369553.1| DNA gyrase, B subunit [Desulfobacca acetoxidans DSM 11109]
 gi|328452543|gb|AEB08372.1| DNA gyrase, B subunit [Desulfobacca acetoxidans DSM 11109]
          Length = 803

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/797 (47%), Positives = 524/797 (65%), Gaps = 9/797 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y AD+I++L GL+AV++RPSMYIG+T G  GLHH++YEV+DN+IDE+L GY + I VT+
Sbjct: 14  DYGADNIRVLGGLEAVRQRPSMYIGNT-GPEGLHHLVYEVVDNSIDEALAGYCNQIQVTI 72

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + D S TV DNGRGIP DLHKEE + A EV+MT+LHAGGKF+ K+Y+VSGGLHGVGVSVV
Sbjct: 73  HSDNSVTVEDNGRGIPVDLHKEENLPAVEVVMTKLHAGGKFDHKTYQVSGGLHGVGVSVV 132

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS +L++ I+R+G +Y   +  G     L +TG      GT+++F P ++IFS   F+
Sbjct: 133 NALSEYLEVEIRRDGRVYHQRYEQGNTSTQLAITGETK-RRGTKISFKPDAEIFSETTFS 191

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLN  V+I L D+RS +  +   +Y+GGI+ FV +L+R+K  + + PI
Sbjct: 192 YDILATRLRELSFLNRGVRIMLEDERSGKKND--FYYEGGIQEFVIFLNRNKTLMHEPPI 249

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + GSR  + I++A ++ND Y+E +  + NNI  ++GGTHLSG ++ LTR I  Y+  + 
Sbjct: 250 YLNGSRAEVIIEIAFQYNDTYNEQIFTYANNINTREGGTHLSGFKAGLTRCINQYMATAD 309

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K  K  + GDD REG T V+SIK+PDP+F  QTK KL +S+++ +VE+ V + L  +L
Sbjct: 310 LPKNLKEHLTGDDVREGLTGVISIKLPDPQFEGQTKTKLGNSDIKGLVENLVYENLLTYL 369

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P  AK I+ KV++A+  R+AARRA++L R+KG L   +LPGKLADC ERDP + EL+
Sbjct: 370 GENPTIAKQILAKVIEAARAREAARRAKELARKKGGLSELALPGKLADCQERDPSRRELY 429

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGGSAKQ R R  QAILPL+GKILNVE+AR+DKML SQEI TLITALG GIG++
Sbjct: 430 LVEGDSAGGSAKQARDRRFQAILPLKGKILNVEKARYDKMLQSQEIRTLITALGAGIGKE 489

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
             D+ KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQM  LI  G+LYI +PPLY +TRG 
Sbjct: 490 EQDLEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMAELISRGYLYIAQPPLYRLTRGN 549

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
              Y+KDE   +DYL+ + L ++     +S+  I+   L  ++   +     +  F    
Sbjct: 550 EKIYLKDEGPFQDYLLARGLDKKTLTLGNSQT-ITNAALITYLKKVISHQHSMDRFEKRG 608

Query: 609 -DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667
            D+  +++ +  G+ + E  ++            L     +             +LV   
Sbjct: 609 VDRQLLKRIIDLGLIDKEFLRQREK--MQTWGEALRSTGLQIRLEADEEHQAWKLLVYNP 666

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
                  + ++   +     +        + E       L       +I     L+  + 
Sbjct: 667 GVNDGNPWCVDWELLSGSDFQTLVKLQQALAELRQPPYRLQEGAKTWEIATLEELVQVVL 726

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           + G+KG+S+QR+KGLGEMN  QLWETT++P+TR+LL+V I DA  AD++F+ LMGD+VEP
Sbjct: 727 NEGQKGLSVQRFKGLGEMNPEQLWETTMDPETRTLLQVNIEDAVAADEIFTILMGDKVEP 786

Query: 788 RREFIQENSLP-SALDI 803
           RR+FIQ N+L  S LDI
Sbjct: 787 RRDFIQNNALELSQLDI 803


>gi|229586917|ref|YP_002845418.1| DNA gyrase subunit B [Rickettsia africae ESF-5]
 gi|228021967|gb|ACP53675.1| DNA gyrase subunit B [Rickettsia africae ESF-5]
          Length = 807

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/809 (52%), Positives = 568/809 (70%), Gaps = 8/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+       SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DNAIDESL
Sbjct: 1   MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ VTLN +GS TVSDNGRGIP ++H EEGISAAEVIMT+LHAGGKF+Q +YKV+
Sbjct: 61  AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHGEEGISAAEVIMTQLHAGGKFDQNAYKVA 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y M F NGI + PL V     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+  +F++ T++HRLREL+FLNS V+I L+D R  E +E+  +Y GGIEA+V Y+D
Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVEFYYTGGIEAYVKYID 240

Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +     +  + +   IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP EAK I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG  + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI
Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G +  Y+K+E++L+DYLI  ++++      D K  +  ++L   I+  +K
Sbjct: 540 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDDKERLVGDNLEELINKVVK 598

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ + N +  +  +     K  + LN + + S+K+ W  
Sbjct: 599 FNDLLDHASKKFNRSITEILAINDLLNNKIFEPESDLRLKKALDVLNSLEDSSDKTNWEV 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I     +RG++E  +L    + SF        +  I + +   L  I    +  
Sbjct: 659 LKHENKIEFFCFSRGLKESKILLKEQLESFEFVQISKLALTICDIFSKQLKFIVKSQEFD 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I  P  LL+TI   G++GI++QR+KGLGEMN+ QLWETTL+P  R+LL+V++ +  +A+ 
Sbjct: 719 ILTPGQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 778

Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +FS LMGD VEPRR FIQ N+L    LD+
Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVVNLDV 807


>gi|68171653|ref|ZP_00545017.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657694|ref|YP_507430.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Arkansas]
 gi|67998927|gb|EAM85614.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599151|gb|ABD44620.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Arkansas]
          Length = 798

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/809 (49%), Positives = 547/809 (67%), Gaps = 27/809 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI +LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DN+IDE+L G+ + I + 
Sbjct: 2   DDYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDIV 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRGIP D+H++EG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVG+SV
Sbjct: 62  IQSDGSVSVVDNGRGIPVDMHEDEGMSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGISV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSSWL+L I R G  Y M F +GI    L V G      GT++TFLPS +IFS  +F
Sbjct: 122 VNALSSWLELTIWRNGKEYFMRFEDGITVKSLSVVGENTTKKGTKITFLPSKNIFSSINF 181

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM----------FYKGGIEAFVSYLD 237
           +Y TL++R+RELSFLNS++ ++L D R  +    +               G  AFV YLD
Sbjct: 182 SYSTLENRIRELSFLNSNINMNLKDLRGAQILNSSFGLKDNSKVNDIEDRGTAAFVKYLD 241

Query: 238 RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           R+K  +    + I+G      IS++L+M WND Y+EN+LCFTNNI QKDGGTHL+G RSA
Sbjct: 242 RNKTAVT-KVVHIEGIVLEHGISLELSMHWNDSYYENMLCFTNNIRQKDGGTHLAGFRSA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR I +Y       KK K +++G+D REG T VL+IK+PDP+FSSQTK+KLVSSE R+ 
Sbjct: 301 MTRCINNYATNEGFLKKAKVNILGEDVREGLTCVLAIKLPDPKFSSQTKDKLVSSEARTA 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ V + L+   E +P  A  I+++++ ++  R+AARRARDL + K   D   LPGKLA
Sbjct: 361 VENIVYEKLTNIFETNPKLATSIIERIIRSAKGREAARRARDLIKSKNGFDFTILPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+ P+ SELF+VEG+SAGGSAKQGR R +QA+L L+GKILNVERA  D++LSS EI 
Sbjct: 421 DCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSAEIA 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +LITA+G+ IG ++FDI K+RYHK+IIMTDADVDG+HIRTLLLTFFFR M  +I  G+LY
Sbjct: 481 SLITAIGSNIGTENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREVIEKGYLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY +T+ K   Y+K+++ L DY+IN ++ +      ++    S N L   +   +
Sbjct: 541 IAQPPLYKVTKHKKEFYIKNDDMLHDYIINNAVKDLTL---NAGESYSGNSLSKVLHQCM 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            I K+ K +     +  +E  +I         ++ N   A  +++ LN +  + E  W  
Sbjct: 598 NISKITKSYDRVIPQHVLESLII-------FFRKHNFDSAGAISDHLNKVFCEYE--WSV 648

Query: 656 SI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            I    +I + R++ G+ +++ +  + + S   K+     + IE+ +  +  L    + I
Sbjct: 649 EIPKEDEISIFRLSHGLVDKYYINSAMMNSEDIKHVIAMCDGIEDIFYNMPILSTKDNNI 708

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           KI+ P SL+D I   G+K +++QR+KGLGEMNA QLW+TTLNP+TR+LL++KI D   AD
Sbjct: 709 KISSPTSLVDNIIEFGKKDMTLQRFKGLGEMNADQLWDTTLNPETRTLLKIKIADCEAAD 768

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            +FS LMGD VEPRR+FI  N+L    +D
Sbjct: 769 SIFSVLMGDFVEPRRDFINNNALNVQNID 797


>gi|241765810|ref|ZP_04763750.1| DNA gyrase, B subunit [Acidovorax delafieldii 2AN]
 gi|241364292|gb|EER59447.1| DNA gyrase, B subunit [Acidovorax delafieldii 2AN]
          Length = 874

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/843 (45%), Positives = 523/843 (62%), Gaps = 49/843 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + SY   +I IL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I 
Sbjct: 36  ASESYGEGAITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 95

Query: 66  VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           VT++ D S +V+DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGL
Sbjct: 96  VTIHSDNSISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 154

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSAGND 168
           HGVGVS VNALS  L+L ++REG ++ + F  G            +  +P+ VTG   + 
Sbjct: 155 HGVGVSCVNALSKKLRLTVRREGKVHVLEFSKGFVQNRIIETVDGVEVSPMKVTGET-DK 213

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GTEV FLP ++IF   + F+Y+ L  RLRELSFLN+ V+I L D+RS +         G
Sbjct: 214 RGTEVHFLPDTEIFKENNEFHYEILAKRLRELSFLNNGVRIRLKDERSGKE--DDFSGAG 271

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFT 277
           G+  FV ++++ K  L  +     G R           +I +++AM+WN  Y E VLCFT
Sbjct: 272 GVRGFVEFINKGKTVLHPTSFYAAGERPAETYGGIPGTHIGVEVAMQWNSAYTEQVLCFT 331

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+P+P
Sbjct: 332 NNIPQRDGGTHLTGLRAAMTRVINKYIEENELAKKAKVEVTGDDMREGLCCVLSVKVPEP 391

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEVR+ VE  V   L+ +L+E P +AKII  K+++A+  R+AAR+AR+
Sbjct: 392 KFSSQTKDKLVSSEVRAPVEDIVGKLLTDYLQEKPNDAKIICGKIVEAARAREAARKARE 451

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKI
Sbjct: 452 MTRRKGVLDGMGLPGKLADCQEKDPSLCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKI 511

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQ-------DSFDINKLRYHKIIIMTDADVDG 510
           LNVE+AR++K+L+S EI TLITALGTGIG+       D FD+ KLRYH+IIIMTDADVDG
Sbjct: 512 LNVEKARYEKLLTSNEILTLITALGTGIGKAGGSTGSDDFDVAKLRYHRIIIMTDADVDG 571

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +L+ 
Sbjct: 572 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKAGKEELYLKDAPALDGFLLRIALNH 631

Query: 571 EIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
                  +    +S + L          + +I       D   +           ++  E
Sbjct: 632 ASVTTGGANPQTLSGDTLAELARKHQIAESVIARLGNFMDAEALRAIADGVSLKLDTVAE 691

Query: 630 INVSLASKLAN--RLNFIAEKSEK--SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
              S  +  A    LN     +E    +    +   + + R   G  +  V+    +   
Sbjct: 692 AEASAIALQAKLRELNTTGAPAEVAGEFDARTDKPLLRISRRHHGNIKSSVITQDFVQGA 751

Query: 686 GSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                   +            ++        + K+      +  + S   +  S QRYKG
Sbjct: 752 DYAALAEAAETFRGLLSEGAKVMRGEGDKQKEEKVGDFRQAMKWLISEAERTTSRQRYKG 811

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800
           LGEMN  QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L +  
Sbjct: 812 LGEMNPEQLWETTMDPNVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAGN 871

Query: 801 LDI 803
           +D+
Sbjct: 872 IDV 874


>gi|292572202|gb|ADE30117.1| DNA gyrase subunit B [Rickettsia prowazekii Rp22]
          Length = 807

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/809 (52%), Positives = 565/809 (69%), Gaps = 8/809 (0%)

Query: 1   MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS   +    SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DN+IDE+L
Sbjct: 1   MSVIEEKCNESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q+SYK+S
Sbjct: 61  AGYCDLVQVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQQSYKIS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y + F NGI + PL +     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYFIRFNNGITEAPLSIVKENIDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S   F+  +F++ T++HRLREL+FLNS V+I L+D R  E +++  +Y GGIEA+V Y+D
Sbjct: 181 SVGTFTNIEFDFVTIEHRLRELAFLNSGVKILLVDNRFEEVKKVEFYYTGGIEAYVQYID 240

Query: 238 RHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +    +         IS++LA+ WND YHEN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAIHPCIVVNTVHVESGISLELALHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP EAK I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPTEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG  + ++ F + KLRYHK+IIMTDADVDG+HIR LLLTFF+R MP LI+ G+LYI
Sbjct: 481 LITALGISVERE-FSLKKLRYHKVIIMTDADVDGSHIRALLLTFFYRHMPELINKGYLYI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY +  G S  Y+K+E++L++YLI  ++++      D +  +   +L + I+  +K
Sbjct: 540 AQPPLYKVKSGASELYLKNEKALQNYLIKSTINDTYL-ILDGQEQLVGENLEDLINKVVK 598

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ +FN +  +  + +   K  + LN + E  +K+    
Sbjct: 599 FNNLLDHVSKKFNRSITEILAINDLFNKKIFEPESSARLQKALDILNNLEESPDKTNLQV 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I     +RG++E  +L    +  F       F+  I + +   L LI       
Sbjct: 659 LKHENKIEFFHFSRGLKETKILLKEQLELFEFVEISQFALSIFDIFSKRLKLIVKSKAFD 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I  P  LL+TI   G+KGI++QR+KGLGEMN+ QLWETTL+P  R+LL+V++ +  +A+ 
Sbjct: 719 ILTPSQLLNTIIECGKKGITIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEVDEAEG 778

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +FS LMGD VEPRR FIQ N+L    LD+
Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVMNLDV 807


>gi|15604433|ref|NP_220951.1| DNA gyrase subunit B [Rickettsia prowazekii str. Madrid E]
 gi|6647531|sp|Q9ZCX2|GYRB_RICPR RecName: Full=DNA gyrase subunit B
 gi|3861127|emb|CAA15027.1| DNA GYRASE SUBUNIT B (gyrB2) [Rickettsia prowazekii]
          Length = 807

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/809 (52%), Positives = 565/809 (69%), Gaps = 8/809 (0%)

Query: 1   MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS   +    SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DN+IDE+L
Sbjct: 1   MSVIEEKCNESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEAL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q+SYK+S
Sbjct: 61  AGYCDLVQVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQQSYKIS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y + F NGI + PL +     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYFIRFNNGITEAPLSIVKENIDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S   F+  +F++ T++HRLREL+FLNS V+I L+D R  E +++  +Y GGIEA+V Y+D
Sbjct: 181 SVGTFTNIEFDFVTIEHRLRELAFLNSGVKILLVDNRFEEVKKVEFYYTGGIEAYVQYID 240

Query: 238 RHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +    +         IS++LA+ WND YHEN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAIHPCIVVNTVHVESGISLELALHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP EAK I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPTEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG  + ++ F + KLRYHK+IIMTDADVDG+HIR LLLTFF+R MP LI+ G+LYI
Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRALLLTFFYRHMPELINKGYLYI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY +  G S  Y+K+E++L++YLI  ++++      D +  +   +L + I+  +K
Sbjct: 540 AQPPLYKVKSGASELYLKNEKALQNYLIKSTINDTYL-ILDGQEQLVGENLEDLINKVVK 598

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ +FN +  +  + +   K  + LN + E  +K+    
Sbjct: 599 FNNLLDHVSKKFNRSITEILAINDLFNKKIFEPESSARLQKALDILNNLEESPDKTNLQV 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I     +RG++E  +L    +  F       F+  I + +   L LI       
Sbjct: 659 LKHENKIEFFHFSRGLKETKILLKEQLELFEFVEISQFALSIFDIFSKRLKLIVKSKAFD 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I  P  LL+TI   G+KGI++QR+KGLGEMN+ QLWETTL+P  R+LL+V++ +  +A+ 
Sbjct: 719 ILTPSQLLNTIIECGKKGITIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEVDEAEG 778

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +FS LMGD VEPRR FIQ N+L    LD+
Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVMNLDV 807


>gi|157825960|ref|YP_001493680.1| DNA gyrase subunit B [Rickettsia akari str. Hartford]
 gi|157799918|gb|ABV75172.1| DNA gyrase subunit B [Rickettsia akari str. Hartford]
          Length = 807

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/809 (52%), Positives = 568/809 (70%), Gaps = 8/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+       SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DNAIDESL
Sbjct: 1   MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ VTLN +GS TVSDNGRGIP ++H+EEG SAAEVIMT+LHAGGKF+Q SYKVS
Sbjct: 61  AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHEEEGTSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y + F NGI   P+ V     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNGITAAPIAVVKENIDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F+  +F++ T++HRLREL+FLNS V+I  +D R  E +E+  +Y GGIEA+V Y+D
Sbjct: 181 SAETFTNIEFDFGTIEHRLRELAFLNSGVKILFVDNRFEEVKEVEFYYMGGIEAYVKYID 240

Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +     +  + +   IS++LAM WND YHEN++CFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAIHPCIVVNTENADSGISLELAMHWNDSYHENIMCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKFKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP E+K I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAESKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG  + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI
Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G +  Y+K+E++L+DYLI  ++++      D K  +  ++L   I+  +K
Sbjct: 540 AQPPLYKVKKGAAELYLKNEQALQDYLIKSTINDATL-TLDGKEQLVGDNLEELINKVVK 598

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L++      +++  E   I+ + N +  +  +     K  + LN + E  +K+ W  
Sbjct: 599 FNGLLEHASKKFNRSITEILAINDLLNNKIFEAESDLRLEKALDVLNSLEESPDKTNWEI 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I   R + G++E  +L    + SF        +  I + +   L LI    +  
Sbjct: 659 LKHENKIEFFRFSMGLKESKILLKEQLESFEFIQISKLALTIFDIFSKKLKLIVKSQECG 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I     LL+TI   G+KGI++QR+KGLGEMN+ QLWETTL+P  R+LL+V++ +  +A+ 
Sbjct: 719 ILTASQLLNTIIECGKKGINIQRFKGLGEMNSDQLWETTLDPAKRTLLQVRVAEVDEAEG 778

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +FS LMGD VEPRR FIQEN+L    LD+
Sbjct: 779 IFSTLMGDVVEPRRLFIQENALNVMNLDV 807


>gi|120608717|ref|YP_968395.1| DNA gyrase subunit B [Acidovorax citrulli AAC00-1]
 gi|120587181|gb|ABM30621.1| DNA gyrase subunit B [Acidovorax citrulli AAC00-1]
          Length = 877

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/846 (45%), Positives = 530/846 (62%), Gaps = 53/846 (6%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y   +IQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I V
Sbjct: 36  SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 95

Query: 67  TLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           T++ D S +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLH
Sbjct: 96  TIHSDNSISVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 154

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFI------------NGILDNPLVVTGSAGNDT 169
           GVGVS VNALS  L+L ++R+G ++ + F             NG+  +P+ VTG   +  
Sbjct: 155 GVGVSCVNALSKMLRLTVRRDGKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKR 213

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GTEV FLP ++IF   + F+Y+ L  RLRELSFLN+ V+I L D+R+ +         GG
Sbjct: 214 GTEVHFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGG 271

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTN 278
           +  FV +++  KK L  +     GSR            I +++AM+WNDG++E+VLCFTN
Sbjct: 272 VMGFVQFINASKKVLHPNAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTN 331

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+
Sbjct: 332 NIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPK 391

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++
Sbjct: 392 FSSQTKDKLVSSEVRAPVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREM 451

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKGVLD   LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR R+ QAILPLRGKIL
Sbjct: 452 TRRKGVLDGMGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIL 511

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQ-----------DSFDINKLRYHKIIIMTDAD 507
           NVE+AR++K+L+S EI TLITALGTGIG+           D F+++KLRYH+IIIMTDAD
Sbjct: 512 NVEKARYEKLLTSNEILTLITALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDAD 571

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +
Sbjct: 572 VDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVA 631

Query: 568 L-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           L    +    +    +    L          + +I+      D+  +         N ++
Sbjct: 632 LRDASVTTGGEQARTLDGETLSTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDT 691

Query: 627 DQEINVSLASKLANRLNF----IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682
            ++   S  +  A         +  +    +    +   + + R   G  +  ++    +
Sbjct: 692 VEDAEASAVALQAKLRELTTTGVPAEVAGEFDARTDKPVLRISRRHHGNIKSSIITQDFV 751

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQR 738
                      ++           ++        + K++     +  +     +  S QR
Sbjct: 752 HGADYAALAEAAHTFRGLLGEGAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSRQR 811

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L 
Sbjct: 812 YKGLGEMNPEQLWETTMDPEVRRLLRVQIEDAIEADRVFTMLMGDEVEPRRDFIETNALR 871

Query: 799 S-ALDI 803
           +  +D+
Sbjct: 872 AGNIDV 877


>gi|326314826|ref|YP_004232498.1| DNA gyrase subunit B [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371662|gb|ADX43931.1| DNA gyrase, B subunit [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 877

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/846 (45%), Positives = 529/846 (62%), Gaps = 53/846 (6%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y   +IQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I V
Sbjct: 36  SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 95

Query: 67  TLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           T++ D S +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLH
Sbjct: 96  TIHSDNSISVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 154

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFI------------NGILDNPLVVTGSAGNDT 169
           GVGVS VNALS  L+L ++R+G ++ + F             NG+  +P+ VTG   +  
Sbjct: 155 GVGVSCVNALSKMLRLTVRRDGKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKR 213

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GTEV FLP ++IF   + F+Y+ L  RLRELSFLN+ V+I L D+R+ +         GG
Sbjct: 214 GTEVHFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGG 271

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTN 278
           +  FV +++  KK L  +     GSR            I +++AM+WNDG++E+VLCFTN
Sbjct: 272 VMGFVQFINASKKVLHPNAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTN 331

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+
Sbjct: 332 NIPQRDGGTHLTGLRAAMTRVIGKYIEQNEMAKKAKVEVSGDDMREGLCCVLSVKVPEPK 391

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++
Sbjct: 392 FSSQTKDKLVSSEVRAPVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREM 451

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKGVLD   LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR R+ QAILPLRGKIL
Sbjct: 452 TRRKGVLDGMGLPGKLADCQEKDPAMSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIL 511

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQ-----------DSFDINKLRYHKIIIMTDAD 507
           NVE+AR++K+L+S EI TLITALGTGIG+           D F+++KLRYH+IIIMTDAD
Sbjct: 512 NVEKARYEKLLTSNEILTLITALGTGIGKASADGTGKSGADDFNVDKLRYHRIIIMTDAD 571

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +
Sbjct: 572 VDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVA 631

Query: 568 L-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           L    +    +    +    L          + +I+      D+  +         N ++
Sbjct: 632 LRDASVTTGGEQARTLDGETLGTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDT 691

Query: 627 DQEINVSLASKLANRLNF----IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682
            ++   S  +  A         +  +    +    +   + + R   G  +  V+    +
Sbjct: 692 VEDAEASAVALQAKLRELTTTGVPAEVAGEFDARTDKPVLRISRRHHGNIKSSVITQDFV 751

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQR 738
                      ++           ++        + K+      +  +     +  S QR
Sbjct: 752 HGADYAALAEAAHTFRGLLGEGAKVLRGEGERQREEKVGDFRQAMAWLIKEAERTTSRQR 811

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L 
Sbjct: 812 YKGLGEMNPEQLWETTMDPEVRRLLRVQIEDAIEADRVFTMLMGDEVEPRRDFIETNALR 871

Query: 799 S-ALDI 803
           +  +D+
Sbjct: 872 AGNIDV 877


>gi|157964719|ref|YP_001499543.1| DNA gyrase subunit B [Rickettsia massiliae MTU5]
 gi|157844495|gb|ABV84996.1| DNA gyrase subunit B [Rickettsia massiliae MTU5]
          Length = 808

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/809 (52%), Positives = 565/809 (69%), Gaps = 10/809 (1%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+       SSY ADSI++LKGL+AV+KRP MYIGD    SGLHHMIYEV+DNAIDESL
Sbjct: 4   MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 63

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY +++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q +YKV+
Sbjct: 64  AGYCNLVRVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNTYKVA 123

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y + F NGI + PL V     +  GTEVTF P
Sbjct: 124 GGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNGITEAPLAVVKENIDKKGTEVTFFP 183

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+  +F++ T++HRLREL+FLNS V+I L+D R  E +++  +Y GGIEA+V Y+D
Sbjct: 184 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKKVEFYYTGGIEAYVKYID 243

Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +     +  +     +S +LAM WND YHEN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 244 RAKHAIHPCIVVNTENVESGMSFELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 303

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +      K    GDD REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 304 TRVITSYLDTTNKK--AKNDFSGDDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 361

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP EAK I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 362 ENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 422 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG  + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI
Sbjct: 482 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 540

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G +  Y+K+E++L+DYLI  ++++      D K  +  ++L   I+  +K
Sbjct: 541 AQPPLYKVKKGAAELYLKNEQALQDYLIKSTINDTTL-ILDCKEQLVGDNLEELINKVVK 599

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ + N +  +  +     K  + LN + +  +K+ W  
Sbjct: 600 FNGLLDHASKKFNRSITEILAINDLLNNKIFEPESDLRLKKALDVLNSLEDSPDKTNWEV 659

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I   R +RG++E  +L    + SF        +  I + +   L LI    +  
Sbjct: 660 LKHENKIEFFRFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFSKQLKLIVKSQEFD 719

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I  P  LL+TI   G++GI++QR+KGLGEMN+ QLWETTL+P  R+LL+V++ +  +A+ 
Sbjct: 720 ILTPSQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 779

Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +FS LMGD VEPRR FIQ N+L    LD+
Sbjct: 780 IFSTLMGDVVEPRRLFIQANALNVVNLDV 808


>gi|58038495|ref|YP_190459.1| DNA gyrase subunit B [Gluconobacter oxydans 621H]
 gi|58000909|gb|AAW59803.1| DNA gyrase subunit B [Gluconobacter oxydans 621H]
          Length = 814

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/819 (51%), Positives = 554/819 (67%), Gaps = 21/819 (2%)

Query: 1   MSDNIQN--------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           MS+              Y A SI +LKGLDAV+KRP MYIGDTD  SGLHHM++E++DNA
Sbjct: 1   MSETQNQPEIPGADGEDYGASSISVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEIIDNA 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           +DE+  G+A    +TLN DGS +V D+GRGIPTDLH EEGISAAEV++T+LHAGGKFNQ 
Sbjct: 61  VDEAQAGHATYCILTLNGDGSVSVRDDGRGIPTDLHPEEGISAAEVVLTKLHAGGKFNQN 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVG +VVNALS W+++RI R G  +++ F +G  D  L V G +  D GT 
Sbjct: 121 SYKVSGGLHGVGAAVVNALSEWMEVRIWRNGLEHKIRFQHGERDEALHVIGPSSEDRGTL 180

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTF PS   F+  DF+   L+ R+REL+FLNS + I L D+R  EP+E+   Y GG+ AF
Sbjct: 181 VTFKPSKQTFTKVDFDISILERRVRELAFLNSGMLIILRDERHAEPKELRFHYDGGLSAF 240

Query: 233 VSYLDRHKKP--LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +LD  K           I      I ++ A+ WND YHE +LCFTNNIPQ+DGGTHL+
Sbjct: 241 AEWLDSSKTSIVTPPITGEIDNPESGIRVEFALTWNDSYHETMLCFTNNIPQRDGGTHLA 300

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR +  Y E    +K++  S+ G+D REG T+VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 301 GFRQALTRVVGKYAE--GVAKREAGSLTGEDMREGMTAVLSVKVPDPKFSSQTKDKLVSS 358

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+ VV +  +D +S W E HP EAK IV K++DA+  R+AARRAR+LTRRKGVLD++SL
Sbjct: 359 EVQPVVHAAASDAISHWFETHPKEAKAIVAKIIDAASAREAARRARELTRRKGVLDVSSL 418

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERD  K+E+F+VEGDSAGG+AKQGR R  QAILPLRGKILNVERARFD+ML 
Sbjct: 419 PGKLADCQERDASKAEIFIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVERARFDRMLG 478

Query: 471 SQEIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           S EIGTLITALGTGIG+       F   KLRYHKI+IMTDADVDG+HIRTLLLTFFFRQM
Sbjct: 479 SAEIGTLITALGTGIGRGEVDQGGFSAEKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQM 538

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P LI  G+LYI +PPLY   RG+  +Y+KD+ +LE YL++++L+     F D +  ++  
Sbjct: 539 PELIEQGYLYIAQPPLYRAKRGQEERYLKDDAALEQYLLDKALANASLRFADGRE-LTGE 597

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            L   +       + ++          +EQA ISGV + +    +  S  ++   RL+  
Sbjct: 598 PLAEEVAFLSAAARRLQSIASKVPVWVMEQAAISGVLDSDI--AVATSRMAEFQQRLDGA 655

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
           +  +E+ W  SI+ + +   R  RGV E + +E S + S  +++      R+  ++   +
Sbjct: 656 SLSNERGWKVSISETGLECARSVRGVGEVYRIEPSLLRSAEARWLVSEWERLARDFAKPV 715

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +L  +    ++ GP ++++ I   GR+G+++ R+KGLGEMN  QLW TTL+P TR+LL+V
Sbjct: 716 TLTLDPTAYELFGPAAVMERILLQGRRGLTINRFKGLGEMNDEQLWHTTLDPSTRTLLQV 775

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ++ D   A  +FS LMGD VEPRR+FI  N+L    LD+
Sbjct: 776 RVGDVEDAGQVFSTLMGDVVEPRRDFIVGNALKVANLDV 814


>gi|34581483|ref|ZP_00142963.1| DNA gyrase subunit B [Rickettsia sibirica 246]
 gi|28262868|gb|EAA26372.1| DNA gyrase subunit B [Rickettsia sibirica 246]
          Length = 807

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/809 (52%), Positives = 568/809 (70%), Gaps = 8/809 (0%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+       SSY ADSI++LKGL+AVKKRP MYIGD    SGLHHMIYEV+DNAIDESL
Sbjct: 1   MSEIEEKFNESSYGADSIKVLKGLEAVKKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D++ VTLN +GS TVSDNGRGIP ++H EEGISAAEVIMT+LHAGGKF+Q +YKV+
Sbjct: 61  AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHGEEGISAAEVIMTQLHAGGKFDQNAYKVA 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+LRI R    Y M F NGI + PL V     +  GTEVTF P
Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFP 180

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+  +F++ T++HRLREL+FLNS V+I L+D R  E +E+  +Y GGIEA+V Y+D
Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVEFYYTGGIEAYVKYID 240

Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R K  +     +  + +   IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS  +SA+
Sbjct: 241 RAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR ITSY++ +  +KK K    G+D REG   VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V   +  W EEHP EAK I+ K+++A+  R+AAR+AR+LTRRK  L++++LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAEAKSIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVERARFDKML S +IGT
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITALG  + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI
Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G +  Y+K+E++L+DYLI  ++++      D K  +  ++L   I+  +K
Sbjct: 540 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDDKERLVGDNLEELINKVVK 598

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655
            + L+       +++  E   I+ + N +  +  +     K  + LN + +  +K+ W  
Sbjct: 599 FNGLLDHASKKFNRSITEILAINDLLNNKIFEPESDLRLKKALDVLNSLEDSPDKTNWEV 658

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             + + I     +RG++E  +L    + SF        +  I + +   L LI    +  
Sbjct: 659 LKHENKIECFCFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFSKQLKLIVKSQEFD 718

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I  P  LL+TI   G++GI++QR+KGLGEMN+ QLWETTL+P  R+LL+V++ +  +A+ 
Sbjct: 719 ILTPSQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 778

Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +FS LMGD VEPRR FIQ N+L    LD+
Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVVNLDV 807


>gi|225629988|ref|YP_002726779.1| DNA gyrase, B subunit [Wolbachia sp. wRi]
 gi|225591969|gb|ACN94988.1| DNA gyrase, B subunit [Wolbachia sp. wRi]
          Length = 809

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/808 (48%), Positives = 538/808 (66%), Gaps = 19/808 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N   +SY+AD+I+IL+GLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDESL GY D 
Sbjct: 13  NTMENSYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNAIDESLAGYCDK 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V++N DGS +V+DNGRGIPTD+H+EEGISAAEVIMT+LHAGGKF+  +YKVSGGLHGV
Sbjct: 73  IEVSINKDGSVSVTDNGRGIPTDIHEEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGV 132

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALSSWL+L I R    + M F +G    PL V     N  GT+VTF+PS++ F+
Sbjct: 133 GISVVNALSSWLELTIWRNKKEHFMRFEDGESIEPLKVVNENTNKRGTKVTFMPSTETFN 192

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA-----FVSYLDR 238
             +F+Y TL+ R+REL+FLNS++ I+L D R+    E         +             
Sbjct: 193 GINFSYSTLESRIRELAFLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLD 252

Query: 239 HKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
             K  +     ++G      IS++++M WND Y+EN+LCFTNNI Q+DGGTHL+G RSAL
Sbjct: 253 KNKTHVTKIASMKGDAEDLGISLEISMEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSAL 312

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I +Y       KK K ++ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VV
Sbjct: 313 TRCINTYATNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVV 372

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES V+D LS  LE  P  A  IV++ + ++  R+AAR+AR+L + K  +DIA+LPGKLAD
Sbjct: 373 ESIVSDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIATLPGKLAD 432

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+ P+ SELF+VEG+SAGG+AKQGR+R+ QA+L LRGKILNVER   D++ SS EIG+
Sbjct: 433 CQEKAPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGS 492

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITA+G GIG + FDI K RYHKIIIMTDADVDG+HIRTL+LTFFFR M  +I  G+LYI
Sbjct: 493 LITAIGAGIGSEHFDIEKARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYI 552

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY +T+     Y+KD+E+ E+Y+IN ++         ++     NDLR  ++  + 
Sbjct: 553 AQPPLYKVTKNAKDTYIKDDETFEEYIINSAVKRLTLSSTATE----FNDLRLILNKCVS 608

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
           I  + K++     +  +E  +I         ++  +S A  +   L  +  +        
Sbjct: 609 ISNISKNYDREIPQNLLESLLIL-------SKKNALSSADDILKYLKLMYSEYTWEVEIK 661

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
               +I + ++ +G+ ++++   S +     +      + I   +     L     +I+I
Sbjct: 662 DEEKEIHISKLFQGLADKYIFALSMLEGKDMQNILSLLDGISNLFNGDSFLKSQETEIRI 721

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           T P +L   I   G+KG+++QR+KGLGEMNA QLW+TTLNP+ R+LL+V+I D  +AD +
Sbjct: 722 TSPSTLAKIIMDYGKKGLTLQRFKGLGEMNADQLWDTTLNPEARTLLKVEIKDCEEADSI 781

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           FS LMGD VEPRR+FI  N+L    +DI
Sbjct: 782 FSILMGDIVEPRRDFINSNALNVHDVDI 809


>gi|190571487|ref|YP_001975845.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018889|ref|ZP_03334697.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357759|emb|CAQ55211.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995840|gb|EEB56480.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 790

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/805 (50%), Positives = 542/805 (67%), Gaps = 24/805 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y+AD+I+IL+GLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDESL GY   I V
Sbjct: 2   ESNYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCSKIEV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N DGS +V+DNGRGIPTD+H EEGISAAEVIMT+LHAGGKF+  +YKVSGGLHGVG+S
Sbjct: 62  SINEDGSVSVTDNGRGIPTDIHPEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGIS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSSWL+L I R    + M F +G     L +     N  GT VTF+PS+  FS  D
Sbjct: 122 VVNALSSWLELTIWRNKKEHFMRFEDGESIESLKIINENTNKRGTRVTFMPSTGTFSSID 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG------GIEAFVSYLDRHK 240
           F+Y TL+ R+REL+FLNS+++I L D R+    E             G   FV YLD++K
Sbjct: 182 FSYSTLESRIRELAFLNSNIEIILRDLRNKPHVESHFNDSKESEDNFGTANFVRYLDKNK 241

Query: 241 KPLMQSPIRIQGSRD-NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + +        +D   S++++M WND Y+EN+LCFTNNI Q+DGGTHL+G RSALTR 
Sbjct: 242 THVTKIASIRDNVKDLGTSVEISMEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSALTRC 301

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y       KK K ++ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VVES 
Sbjct: 302 INNYANNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESI 361

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D LS  LE  P  A  IV++ + ++  R+AAR+AR+L + K  ++IA+LPGKLADC E
Sbjct: 362 VFDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKNKNNINIATLPGKLADCQE 421

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P+ SELF+VEG+SAGG+AKQGR+R+ QA+L LRGKILNVERA  D++ SS EIG+LIT
Sbjct: 422 KVPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERAGLDRIFSSAEIGSLIT 481

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG + FDI K RYHKIIIMTDADVDG+HIRTL+LTFFFR M  +I  G+LYI +P
Sbjct: 482 AIGAGIGSEHFDIEKTRYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQP 541

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY +T+     Y+KD+E+ E+Y++N ++                 DLR  ++  L I  
Sbjct: 542 PLYKVTKNAKDTYIKDDETFEEYIVNSAIKRLTLNGV-------GKDLRFVLNKCLSISN 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
           + K++     K  +E  +I         ++  +  A ++   L  +   SE +W   + +
Sbjct: 595 ISKNYDREIPKDLLESLLIL-------SKKNALLSADEILKYLKLM--YSEYNWEVEVKD 645

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            +I + ++ +G+ +++V   S + S   +      + I + +     L     +IKI  P
Sbjct: 646 EEIHIAKLFQGLADKYVFSLSMLESKEIRNILSSLDNIIDLFNGDSFLQSQETEIKIKSP 705

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            +L   +   G+KG+++QR+KGLGEMNA QLWETTLNP+TR+LL+V+I D  +AD +FS 
Sbjct: 706 STLAKIVMDYGKKGLTLQRFKGLGEMNADQLWETTLNPETRTLLKVEIKDCEEADSIFSV 765

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGD VEPRR+FI  N+L    +DI
Sbjct: 766 LMGDIVEPRRDFINNNALNVHDVDI 790


>gi|322417549|ref|YP_004196772.1| DNA gyrase subunit B [Geobacter sp. M18]
 gi|320123936|gb|ADW11496.1| DNA gyrase, B subunit [Geobacter sp. M18]
          Length = 796

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/808 (46%), Positives = 531/808 (65%), Gaps = 17/808 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   + + Y AD IQIL+GL+AV+KRP+MYIG T  + GLHH++YE++DNAIDE+L GY
Sbjct: 1   MSSE-EQNDYGADKIQILEGLEAVRKRPAMYIGSTAAQ-GLHHLVYELVDNAIDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D + VT+++DG+ TV DNGRGIPTD+H  EG SAAEV++T LHAGGKF+  SYKVSGGL
Sbjct: 59  CDAVQVTIHLDGTVTVEDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNSSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ L+L I+R G++Y  S+  G+   PL +TG      GT++TFLP  +
Sbjct: 119 HGVGSSVVNALSTRLELEIRRNGHLYTQSYRRGVPQAPLAITGETK-RRGTKITFLPDGE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F++D L  RLREL+FLN+ V+I + D+R+ +  +   FY+GGI +FV YL+++K
Sbjct: 178 IFETTEFSFDILSKRLRELAFLNAGVRIKIHDERTEKDHD--FFYEGGIRSFVEYLNKNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +   PI I+G +  + I++AM++ND Y E V  F NNI   +GGTHL G +++LTR +
Sbjct: 236 NLVNPDPIYIKGEKGGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLIGFKASLTRTM 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y   +   K  K ++ G+D REG T+V+S+K+  P+F  QTK KL +SEV+  VE+ +
Sbjct: 296 NNYATANNLLKNVKVAISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLM 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ +LEE+P  A+ I++K +DA+  R+AAR+AR+LTRRKG L++ +LPGKLADC E+
Sbjct: 356 NEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGKLADCQEK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML+SQEI TLI+A
Sbjct: 416 DPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGT IG++ FDI KLRYH+IIIMTDADVDG+HI TLLLTFFFRQM  +I  G+LYI +PP
Sbjct: 476 LGTSIGKEDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMMEMIERGYLYIAQPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL--FCDSKGVISKNDLRNFIDDALKID 598
           LY I RG+  QY+K+E +L+ YL+ +   +        D + V     +   +   +  D
Sbjct: 536 LYKIKRGRKEQYLKNEAALQSYLLEEGTEDMTLKLGIGDDERVYRGKQIIPILTQLIDYD 595

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
           +L            + +  +        E   ++   L           A+  + S   +
Sbjct: 596 ELFDKVVKKGINELLLRVFLKAGIKPGLEEMTDLIALLPKMKEAYPEVEAQPFDDSILFA 655

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
             N  + V +    V E +  E + +     + + +              ++   ++ + 
Sbjct: 656 FGNLRVRVDQQIFEVLESY--EYAMLLDNHKRVRSMMGAGSGAVLGPEDKVLLETERQE- 712

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                +L       +KG+ +QRYKGLGEMN  QLWETT++ + R LL+VKI DA  A+++
Sbjct: 713 ----EILSFFLESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEI 768

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F+ LMGD+VEPRR+FI++N+L    LD+
Sbjct: 769 FTVLMGDQVEPRRDFIEQNALNVSNLDV 796


>gi|256830858|ref|YP_003159586.1| DNA gyrase subunit B [Desulfomicrobium baculatum DSM 4028]
 gi|256580034|gb|ACU91170.1| DNA gyrase, B subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 803

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/812 (44%), Positives = 513/812 (63%), Gaps = 18/812 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S+Y AD+I +L+GL AV+ RP+MYIG T+  +GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MTQKT--STYTADNITVLEGLSAVRMRPAMYIGSTN-TNGLHHLVYEVIDNSIDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++MD S ++ DNGRGIP D+H +E   A EV+MT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDHIKVVVHMDNSVSIVDNGRGIPVDMHPKEKKPALEVVMTVLHAGGKFDNDSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L++ + R G+ +   +  G+   PL V G   + TGT V F P  D
Sbjct: 118 HGVGVSVVNALSEYLEVTVSRGGHRHYQRYCRGVPQAPLAVIGET-DKTGTLVRFRPDED 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   DF YD L  R  EL++LN  ++I   D++S         Y+GGI +FV    +++
Sbjct: 177 IFEELDFQYDVLAKRFEELAYLNPGIKIEFFDEKS--QNRDVFKYEGGIISFVKN--KNQ 232

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +   +   G  + +SID A+++  GY ENV  F NNI  K+GGTHL G ++ALTR I
Sbjct: 233 DNGIHKVVGGTGEMEGVSIDFALQYTAGYKENVFTFANNIRTKEGGTHLQGFKTALTRAI 292

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++ S   KK K+ V GDD REG T+++S+K+P+P+F  QTK KL +SEV   V + V
Sbjct: 293 NTYIQNSDVPKKLKQKVSGDDVREGLTAIISVKIPNPQFEGQTKTKLGNSEVAGYVATMV 352

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +  E+P + ++I++KV+DA+  RDAARRA+DL RRKG L   +LPGKLADC  +
Sbjct: 353 YEALNQFFGENPKDVRLIIEKVIDAARARDAARRAKDLVRRKGALSDNALPGKLADCQSK 412

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + E+F+VEGDSAGGSAKQGR+ + QAILPLRGKILNVE+ RFDKML ++EI  LITA
Sbjct: 413 DPAECEVFIVEGDSAGGSAKQGRNPKFQAILPLRGKILNVEKTRFDKMLQNKEIKALITA 472

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G GIGQD  D+ +LRYHKI+IMTDADVDGAHIRTL+LTFFFR    LI  G+LYI +PP
Sbjct: 473 MGAGIGQDDVDLARLRYHKIVIMTDADVDGAHIRTLILTFFFRHYEELIKQGYLYIAQPP 532

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +G   +Y+KDE+ +  +LI +   E   +  D +  ++  DLR  ++  L + +L
Sbjct: 533 LYRVHKGSFERYIKDEDEMSQFLIQRVTEEVALILPD-REPLTGEDLRELLNTILALREL 591

Query: 601 IKDFYPNHDKTFIEQAVISGV-------FNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            +D         +   V++                E   +  +     L  I+E+ E   
Sbjct: 592 AQDVANMGIPDGLFMRVVNAPGAIEPDELRANGPDEALTAHMAAGGFSLELISEQDEPQN 651

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL-SLICNGD 712
             +++       R          L     +S   +       +I E     + ++     
Sbjct: 652 GEALDTEARHYLRFIDANNHVIRLGVEFFYSKRYRRAVELLGKIREFGSGQVWTIRHKDV 711

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +++ TGP  LL  +  + +KGI++QRYKGLGEMN  QLW TT++P+ R+ L+V I DA +
Sbjct: 712 ELEATGPFDLLRQVLDLAQKGINVQRYKGLGEMNPEQLWSTTMDPEARTFLQVTIDDAVE 771

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD+LF++LMGD+VEPRREFI+ N+L    LDI
Sbjct: 772 ADELFTKLMGDKVEPRREFIERNALLVSDLDI 803


>gi|58585021|ref|YP_198594.1| DNA gyrase, topoisomerase II, B subunit, GyrB [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58419337|gb|AAW71352.1| DNA gyrase, topoisomerase II, B subunit, GyrB [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 792

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/805 (49%), Positives = 544/805 (67%), Gaps = 22/805 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y+AD+I+IL+GLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDESL GY D I V
Sbjct: 2   ESNYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCDKIEV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N DGS +V+DNGRGIPTD+HKEEGISAAEVIMT+LHAGGKF+  +YKVSGGLHGVG+S
Sbjct: 62  SINEDGSVSVTDNGRGIPTDIHKEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGIS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSSWL+L I R    + M F +G    PL +     N  GT VTF+PS++ FS  D
Sbjct: 122 VVNALSSWLELTIWRNKKEHFMRFEDGESIEPLKIVNKNTNKRGTRVTFMPSTETFSSID 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG------GIEAFVSYLDRHK 240
           F+Y TL++R+REL+FLNSS+ I+L D R+    E             G   FV YLD++K
Sbjct: 182 FSYSTLENRIRELAFLNSSINITLRDLRNKPYIESHFNDSKQSKDNFGTANFVRYLDKNK 241

Query: 241 KPLMQ-SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             + + + ++       ISI+++M WND Y+E++LCFTNNI Q+DGGTHL+G RSALTR 
Sbjct: 242 THVTKITSMKGDAKDLGISIEISMEWNDSYYEHMLCFTNNIRQRDGGTHLAGFRSALTRC 301

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y       KK K S+ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VVES 
Sbjct: 302 INNYATDEGFLKKAKVSLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARTVVESI 361

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D LS  LE  P  A  IV++V+ ++  R+AAR+AR+L + K  +DI++LPGKLADC E
Sbjct: 362 VFDKLSTILETDPKLAASIVERVIRSAKGREAARKARELVKNKNSIDISTLPGKLADCQE 421

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P+ SELF+VEG+SAGG+AKQGR+R+ QA+L LRGKILNVER   D++ SS EIG+LIT
Sbjct: 422 KVPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLIT 481

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG + FDI K RYHKIIIMTDADVDG+HIRTL+LTFFFR M  +I  G+LYI +P
Sbjct: 482 AIGAGIGSEHFDIEKTRYHKIIIMTDADVDGSHIRTLILTFFFRYMREVIERGYLYIAQP 541

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY +T+     Y+KD+E+ E Y++N ++ +            +   LR  +   L I  
Sbjct: 542 PLYKVTKNAEDTYIKDDETFEKYIVNLAVKKLTLNS-------TGRGLRFILSKCLSISN 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
           + K++     +  +E  +I         ++  +S A+++   L  +  +           
Sbjct: 595 ISKNYSRGIPQNLLESLLIL-------SKKNALSSANEILKYLKLMYSEYNWEVEIKDEE 647

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            ++ + ++ +G+ +++V   S + S   +      + + + +     L     +IKI  P
Sbjct: 648 REVHISKLFQGLADKYVFPLSMLDSKEIRNILSSLDDVIDLFNGDSFLKSQETEIKIRSP 707

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            +L   +   G+KG+++QR+KGLGEMNA QLW+TTLNP+TR+LL+V+I D  +AD +FS 
Sbjct: 708 SALAKIVMDYGKKGLTLQRFKGLGEMNADQLWDTTLNPETRTLLKVEIKDCEEADSIFSV 767

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGD VEPRR FI  N+L    +DI
Sbjct: 768 LMGDIVEPRRNFINNNALNVYDVDI 792


>gi|58617165|ref|YP_196364.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Gardel]
 gi|58416777|emb|CAI27890.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Gardel]
          Length = 798

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/809 (50%), Positives = 548/809 (67%), Gaps = 27/809 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y+A SI +LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DN+IDE+L G+ + I + 
Sbjct: 2   NDYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDII 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRGIP D+H++EGI AAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 62  IQNDGSVSVIDNGRGIPVDIHEDEGIPAAEVIMTQLHAGGKFDHSSYKVSGGLHGVGVSV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSSWL+L I R G  Y M F +GI   PL V        GT++TFLPS DIFS   F
Sbjct: 122 VNALSSWLELTIWRNGKEYFMRFEDGITVTPLSVVAENTTKKGTKITFLPSKDIFSFISF 181

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG----------GIEAFVSYLD 237
           NY TL++R+RELSFLNS++ I+L D R  +  + +   KG          G   FV YLD
Sbjct: 182 NYSTLENRIRELSFLNSNININLKDLRDNQISDSSFGIKGHIKTSAIEDRGTSGFVKYLD 241

Query: 238 RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           R+K P+    I I+G+     I+++L+M WND Y+EN+LCFTNNI Q+DGGTHL+G RSA
Sbjct: 242 RNKNPVT-KVIHIEGNIPESGINVELSMHWNDSYYENMLCFTNNIRQRDGGTHLAGFRSA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR I +Y       KK K S++G+D REG T VLSIK+PDP+FSSQTK+KLVSSE R+ 
Sbjct: 301 MTRCINNYATNEGFLKKAKVSILGEDVREGLTCVLSIKLPDPKFSSQTKDKLVSSEARTA 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ V + L+   E +P  A  ++++++ ++  R+AAR+ARD+ + K   D   LPGKLA
Sbjct: 361 VENIVYEKLTNIFETNPKLASSVIERIIRSAKGREAARKARDIIKNKNGFDFTILPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+ P+ SELF+VEG+SAGGSAKQGR R +QA+L L+GKILNVERA  D++LSS EI 
Sbjct: 421 DCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSSEIA 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +LITA+G+ IG ++FDI K+RYHK+IIMTDADVDG+HIRTLLLTFFFR M  +I  G+LY
Sbjct: 481 SLITAVGSNIGVENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREIIEKGYLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY +T+ K   Y+K++E L DY+IN ++     +          + L   +   +
Sbjct: 541 IAQPPLYKVTQNKKELYIKNDEMLYDYIINNAVRNVTFIADKD---YVGDSLSKILHQCM 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           +I K+ K +     +  +E  +I         ++ N + A +++N LN I    E  W  
Sbjct: 598 EISKITKSYNRIIPQNVLESLII-------FFKKHNFNSADEVSNHLNKIFCDYE--WSV 648

Query: 656 SINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            I   D I + R++ G+ +++ L+   + S   +      N IEE +  I  L    + +
Sbjct: 649 EIPEKDNITIFRLSHGLVDKYYLDNKIMNSEDIQRVINMCNNIEEAFSDIPILSTKDNNV 708

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           KI  P SL+D I   G+K +++QR+KGLGEMNA QLW+TTLNPDTR+LL++KI+D   AD
Sbjct: 709 KIDSPTSLVDNIIEFGKKDMTLQRFKGLGEMNADQLWDTTLNPDTRTLLKIKISDCEAAD 768

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            +FS LMGD VEPRR+FI  N+L    +D
Sbjct: 769 SIFSILMGDFVEPRRDFINNNALNVQNID 797


>gi|57239156|ref|YP_180292.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
 gi|58579107|ref|YP_197319.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
 gi|57161235|emb|CAH58151.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
 gi|58417733|emb|CAI26937.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
          Length = 798

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/809 (50%), Positives = 548/809 (67%), Gaps = 27/809 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y+A SI +LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DN+IDE+L G+ + I + 
Sbjct: 2   NDYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDII 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRGIP D+H++EGI AAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 62  IQNDGSVSVIDNGRGIPVDIHEDEGIPAAEVIMTQLHAGGKFDHSSYKVSGGLHGVGVSV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSSWL+L I R G  Y M F +GI   PL V        GT++TFLPS DIFS   F
Sbjct: 122 VNALSSWLELTIWRNGKEYFMRFEDGITVTPLSVVAENTTKKGTKITFLPSKDIFSFISF 181

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG----------GIEAFVSYLD 237
           NY TL++R+RELSFLNS++ I+L D R  +  + +   KG          G   FV YLD
Sbjct: 182 NYSTLENRIRELSFLNSNININLKDLRDNQISDSSFGIKGHIKTSAIEDRGTSGFVKYLD 241

Query: 238 RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           R+K P+    I I+G+     I+++L+M WND Y+EN+LCFTNNI Q+DGGTHL+G RSA
Sbjct: 242 RNKNPVT-KVIHIEGNIPESGINVELSMHWNDSYYENMLCFTNNIRQRDGGTHLAGFRSA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR I +Y       KK K S++G+D REG T VLSIK+PDP+FSSQTK+KLVSSE R+ 
Sbjct: 301 MTRCINNYATNEGFLKKAKVSILGEDVREGLTCVLSIKLPDPKFSSQTKDKLVSSEARTA 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ V + L+   E +P  A  ++++++ ++  R+AAR+ARD+ + K   D   LPGKLA
Sbjct: 361 VENIVYEKLTNIFETNPKLASSVIERIIRSAKGREAARKARDIIKNKNGFDFTILPGKLA 420

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+ P+ SELF+VEG+SAGGSAKQGR R +QA+L L+GKILNVERA  D++LSS EI 
Sbjct: 421 DCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSSEIA 480

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +LITA+G+ IG ++FDI K+RYHK+IIMTDADVDG+HIRTLLLTFFFR M  +I  G+LY
Sbjct: 481 SLITAVGSNIGVENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREIIEKGYLY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY +T+ K   Y+K++E L +Y+IN ++     +          + L   +   +
Sbjct: 541 IAQPPLYKVTQNKKELYIKNDEMLYNYIINNAVRNVTFIADKD---YVGDSLSKILHQCM 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           +I K+ K +     +  +E  +I         ++ N + A +++N LN I    E  W  
Sbjct: 598 EISKITKSYNRIIPQNVLESLII-------FFKKHNFNSADEVSNHLNKIFCDYE--WSV 648

Query: 656 SINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            I   D I + R++ G+ +++ L+   + S   +      N IEE +  I  L    + +
Sbjct: 649 EIPEKDNITIFRLSHGLVDKYYLDNKIMNSEDIQRVINMCNNIEEAFSDIPILSTKDNNV 708

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           KI  P SL+D I   G+K +++QR+KGLGEMNA QLW+TTLNPDTR+LL++KI+D   AD
Sbjct: 709 KIDSPTSLVDNIIEFGKKDMTLQRFKGLGEMNADQLWDTTLNPDTRTLLKIKISDCEAAD 768

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            +FS LMGD VEPRR+FI  N+L    +D
Sbjct: 769 SIFSILMGDFVEPRRDFINNNALNVQNID 797


>gi|332531211|ref|ZP_08407124.1| DNA gyrase subunit B [Hylemonella gracilis ATCC 19624]
 gi|332039318|gb|EGI75731.1| DNA gyrase subunit B [Hylemonella gracilis ATCC 19624]
          Length = 849

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/853 (45%), Positives = 530/853 (62%), Gaps = 54/853 (6%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+  +        YD  SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE
Sbjct: 1   MSEAEKPVGAGAGGYDESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFN 110
           +L GY D I VT++ D S +V+DNGRGIPT     D H E   SAAE+ +T LHAGGKFN
Sbjct: 61  ALAGYCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFN 119

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNP 158
           Q SYKVSGGLHGVGVS VNALS WL+L ++  G ++++ F  G +             +P
Sbjct: 120 QNSYKVSGGLHGVGVSCVNALSRWLRLTVRNGGKVHQLEFARGAVQSRLLTQQSGVDVSP 179

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + V G      GTEV FLP ++IF     F+Y+ L  RLRELSFLN+ V+I L D+R+ +
Sbjct: 180 MKVIGETE-KRGTEVHFLPDTEIFQQNHEFHYEILAKRLRELSFLNNGVRIRLKDERNGK 238

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWND 267
                    GG++ FV +++ +KK L  +     G+R            I +++AM+WND
Sbjct: 239 E--DDFSGAGGVKGFVDFINANKKVLHPNAFHAIGTRPADSYGGIPGTEIGVEVAMQWND 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY+E+VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +  +KK K  V GDD REG  
Sbjct: 297 GYNESVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIESNELAKKAKVEVTGDDMREGLC 356

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
            VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AK +  K+++A+ 
Sbjct: 357 CVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALNDYLEERPNDAKTLCGKIVEAAR 416

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR+AR++TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ 
Sbjct: 417 AREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPSLCEIYIVEGDSAGGSAKQGRDRKF 476

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLRY 497
           QAILPLRGKILNVE+AR++K+L+S EI TLITALGTGIG+          D F+I+KLRY
Sbjct: 477 QAILPLRGKILNVEKARYEKLLTSNEIVTLITALGTGIGKASSDSGKSGADDFNIDKLRY 536

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           H+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD  
Sbjct: 537 HRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKSGKEELYLKDGS 596

Query: 558 SLEDYLINQSLSEEIELFCD-SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
           +L+ YL+  +L+         +  VI+ + L          + +I   +   D   +   
Sbjct: 597 ALDAYLLRIALAGAAIHTGGVTNTVINGDTLAELARKHQLAESVIARLHNFMDVEALRAV 656

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIA-EKSEKSWHGSINNSDILVKRIARGVQEQF 675
                   ++  E  VS  +  A      +  +    +    +   + + R   G  +  
Sbjct: 657 ADGVELKLDTVAEAEVSAVALQAKLRELGSGSEVAGEFDVRTDKPILRISRRHHGNVKSS 716

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGR 731
           V+    +           +            ++        + K+    S +  + S   
Sbjct: 717 VITQDFVHGADYAALAEAAQTFRGLLGEGAKVVRGEGEKQKEEKVADFRSAMAWLISEAE 776

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +  S QRYKGLGEMN  QLWETT++P  R LLRV+I DA +AD +F+ LMGDEVEPRR+F
Sbjct: 777 RTTSRQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDF 836

Query: 792 IQENSLPS-ALDI 803
           I+ N+L +  +D+
Sbjct: 837 IETNALRAGNIDV 849


>gi|311087503|gb|ADP67582.1| DNA gyrase subunit B [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 803

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/807 (46%), Positives = 544/807 (67%), Gaps = 15/807 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + YD+ +I+IL+GLDAV+KRP MYIGDTD  SGLHHM++E++DN+IDE+L GY   I V
Sbjct: 2   KNIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPTD+H EE ISAAEVIMT LH+GGKF+  SY++SGGLHGVG+S
Sbjct: 62  TIHSDNSVSVKDDGRGIPTDIHPEENISAAEVIMTVLHSGGKFDNASYQISGGLHGVGIS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I +    Y+  + +G  +NPL + G   + TGT + F PS   F +  
Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENPLSIIG-TTDATGTYIRFWPSYKTFTNNI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y+ L  RLRELSFLNS++ I L  + +    +    YKGGI+AF+ +L+  K P+  
Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYL--EDNRTSIKNCYHYKGGIKAFIKFLNAKKTPIHT 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                + ++D I +++AM+WN+ + EN+LCFTNNIPQKDGGTHL+G RS +TR +  ++E
Sbjct: 239 HIFYFRSTKDQIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMTRTLNLHIE 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           +   +KK+K ++IG+D REG T+++SIK+PDP+FSSQTK+KLVSSE RSV+ES +N+ L 
Sbjct: 299 REGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIESLINENLI 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P ++K I++K+++A+ VR+AARRAR++ ++K +LD+ +LPGKL+DC E DPK S
Sbjct: 359 EYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDCQENDPKFS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+++FDKM+ SQE+ +LITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ ++I+KLRYH IIIMTDADVDGAHIRTLLLTFF+RQ+P LI  G++YI +PPLY + 
Sbjct: 479 GKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIAQPPLYKLK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +G+  +Y+K++E +  Y I  +L + +    D+  +  K      I       + I    
Sbjct: 539 KGRKEKYIKNDEEMNTYQIKNALKDLVLKSEDNLIINQKLKKFKKIMSEYHYIQTIMKQS 598

Query: 606 PNHDKTFI-EQAVISGVFNCESDQEINVSLASKLANRLNFIAE-------KSEKSWHGSI 657
            ++    +  + +     +   D EI       LA  LN           + +K+   +I
Sbjct: 599 KHYFPKLVFNELIYHNHLHNLKDIEIVKEWIYTLAENLNKKDNSNNHYSIEIKKNLDKNI 658

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
               I + R A     ++  +   + S             ++ +   + +  +G   KI 
Sbjct: 659 FEPTIKISRYAHY--TKYDFKEEFLKSKEYLLITNLGESFKKYFSDKVLIEKSGSTYKID 716

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
              +    +    ++G+ +QRYKGLGEMN  QLW TT+NP+TR++L+V I DA  A++LF
Sbjct: 717 SIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIKDAVSANNLF 776

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMG+ VEPRR+FI+ N+L +  +D+
Sbjct: 777 NTLMGEAVEPRRQFIENNALKAENIDV 803


>gi|171056695|ref|YP_001789044.1| DNA gyrase subunit B [Leptothrix cholodnii SP-6]
 gi|170774140|gb|ACB32279.1| DNA gyrase, B subunit [Leptothrix cholodnii SP-6]
          Length = 864

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/830 (46%), Positives = 526/830 (63%), Gaps = 36/830 (4%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            +++Y +DSIQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I 
Sbjct: 39  ASAAYGSDSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDII 98

Query: 66  VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           VT++ D S +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGL
Sbjct: 99  VTIHTDNSISVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 157

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGND 168
           HGVGVS VN LS+WL+L ++R+G  + M F  GI              +P+ V G   + 
Sbjct: 158 HGVGVSCVNGLSTWLRLTVRRDGRAHFMEFRQGIPQDRVLERRDGFEVSPMKVIGET-DK 216

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEV FLP   IFS  DF+Y+ L  RLRELSFLN+ V+I L+D+R+ +       Y GG
Sbjct: 217 RGTEVHFLPDHTIFSNIDFHYEILSKRLRELSFLNNGVKIRLVDERNNKE--DNFAYAGG 274

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++ FV ++++ KK L  +    +G +      N+ +++AM+WN+ Y+ENVLCFTNNIPQ+
Sbjct: 275 VKGFVEFVNKGKKVLHGNIFHARGDKMSDNQTNVGVEVAMQWNESYNENVLCFTNNIPQR 334

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+GLR+A+TR I  Y++ +  +KK K  + GDD REG   V+S+K+P+P+FSSQT
Sbjct: 335 DGGTHLTGLRAAMTRVINKYIDDNDIAKKAKVEITGDDMREGLACVVSVKVPEPKFSSQT 394

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR+ VE  V+  L+ WL E+P +AK I  K++DA+  RDAAR+AR++TRRKG
Sbjct: 395 KDKLVSSEVRAPVEDIVSRLLTDWLLENPTDAKTICSKIVDAARARDAARKAREMTRRKG 454

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLD   LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPLRGKILNVE+A
Sbjct: 455 VLDGMGLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKA 514

Query: 464 RFDKMLSSQEIGTLITAL----GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           R++K+L+S EI TLITAL    G G+G D F+ +KLRYH+IIIMTDADVDGAHIRTLLLT
Sbjct: 515 RYEKLLTSNEILTLITALGTGIGKGMGGDDFNPDKLRYHRIIIMTDADVDGAHIRTLLLT 574

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FFFRQMP L+  G +YI +PPLY +  GK  QY+KD   L+ YL+  ++          K
Sbjct: 575 FFFRQMPDLVERGNIYIAQPPLYKVKHGKHEQYLKDGSELDAYLLKVAIDGATVEPGAGK 634

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             I+   L       ++   +I       D   +         + +  Q+   S  +   
Sbjct: 635 PAITGAALEELARQYVQASNVIARLSNWMDIEALRAISDGLTLDLDDAQKAEASAVALAG 694

Query: 640 NRLNFIAE-KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
             L   +  +    +    +   + + R   G  +  V+    +     +         +
Sbjct: 695 ALLAVGSSAEVAAEYDARTDKHHLRISRRHHGNIKSSVITQDFVHGADYEALSRAGITFK 754

Query: 699 ENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETT 754
                  ++    GDK K          +  +       +  QRYKGLGEMN  QLWETT
Sbjct: 755 GLLADDATVKRGEGDKQKTAKAGDFRVAMAWLMQQAESSVGRQRYKGLGEMNPGQLWETT 814

Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           ++P  R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L  + +D+
Sbjct: 815 MDPTVRRLLRVQIEDAIEADKVFTMLMGDEVEPRRDFIESNALRAANIDV 864


>gi|121607007|ref|YP_994814.1| DNA gyrase subunit B [Verminephrobacter eiseniae EF01-2]
 gi|121551647|gb|ABM55796.1| DNA gyrase subunit B [Verminephrobacter eiseniae EF01-2]
          Length = 868

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/843 (45%), Positives = 523/843 (62%), Gaps = 49/843 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + SYDA +I IL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I 
Sbjct: 30  ASESYDAGAITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 89

Query: 66  VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           VT++ D S +V+DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGL
Sbjct: 90  VTIHTDNSISVTDNGRGIPTGVKFDDKH-EPRRSAAEIALTELHAGGKFNQNSYKVSGGL 148

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSAGND 168
           HGVGVS VNALS WL+L ++REG ++++ F  G            +  +P+ + G A   
Sbjct: 149 HGVGVSCVNALSKWLRLTVRREGRVHQLEFARGFVQDRLLDTVDGVAVSPMKLAG-ATEK 207

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GTEV FLP ++IF     F+Y+ L  RLRELSFLN+ V+I L D+RS +         G
Sbjct: 208 RGTEVHFLPDAEIFKENRDFHYEILAKRLRELSFLNNGVRIRLKDERSGKE--DDFSGAG 265

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFT 277
           G+  FV ++++ K  L  +     G R           +I +++AM+WN  Y E VLCFT
Sbjct: 266 GVRGFVEFINKGKTALHPNSFYATGERPAETYGGIPGTHIGVEVAMQWNSAYAEQVLCFT 325

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+P+P
Sbjct: 326 NNIPQRDGGTHLTGLRAAMTRVINKYIEETEMAKKAKVEVTGDDMREGLCCVLSVKLPEP 385

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEVR+ VE  V   L+ +L+E P +AKII  K++DA+  R+AAR+AR+
Sbjct: 386 KFSSQTKDKLVSSEVRAPVEDIVGKLLADYLQEKPADAKIICSKIVDAARAREAARKARE 445

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKI
Sbjct: 446 MTRRKGALDGLGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKI 505

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQ-------DSFDINKLRYHKIIIMTDADVDG 510
           LNVE+AR++K+L+S  I TLITALGTGIG+       D FD  KLRYH+IIIMTDADVDG
Sbjct: 506 LNVEKARYEKLLTSDAILTLITALGTGIGKAGGSAGGDDFDAAKLRYHRIIIMTDADVDG 565

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD+ +L+++L+  +L++
Sbjct: 566 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKAGKEELYLKDDPALDNFLLRIALNQ 625

Query: 571 E-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
             +      + V+S   L          + +I       D   +            S  +
Sbjct: 626 ASVLTGNADQAVLSGATLTELARKHQSAESVIARLSHFMDAEALRAMADGVRLRLGSLAD 685

Query: 630 INVSLASKLAN--RLNFIAEKSEK--SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
              S  +  A    L+     +E    +    +   + + R   G  +   +    +   
Sbjct: 686 AQASAVALQAKLRELHTTGAPAEVTGEFDARTDKPLLRISRRHHGNIKSSAITQDFVHGA 745

Query: 686 GSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                   +             +        + KI+     +  + S   +  + QRYKG
Sbjct: 746 DYAALAEAAETFRGLLGANAKAMRGEAEKQKEEKISDFRQAMKWLISEAERTTTRQRYKG 805

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800
           LGEMN  QLWETT++P  R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L +  
Sbjct: 806 LGEMNPEQLWETTMDPSVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIEMNALRAGN 865

Query: 801 LDI 803
           +D+
Sbjct: 866 IDV 868


>gi|42520018|ref|NP_965933.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409755|gb|AAS13867.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 795

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/805 (48%), Positives = 536/805 (66%), Gaps = 19/805 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SY+AD+I+IL+GLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDESL GY D I V
Sbjct: 2   ENSYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCDKIEV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N DGS +V+DNGRGIPTD+H+EEGISAAEVIMT+LHAGGKF+  +YKVSGGLHGVG+S
Sbjct: 62  SINKDGSVSVTDNGRGIPTDIHEEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGIS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSSWL+L I R    + M F +G    PL V     N  GT+VTF+PS++ F+  +
Sbjct: 122 VVNALSSWLELIIWRNKKEHFMRFEDGESIEPLKVVNENTNKRGTKVTFMPSTETFNGIN 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA-----FVSYLDRHKK 241
           F+Y TL+ R+REL+FLNS++ I+L D R+    E         +               K
Sbjct: 182 FSYSTLESRIRELAFLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNK 241

Query: 242 PLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             +     ++G      IS++++M WND Y+EN+LCFTNNI Q+DGGTHL+G RSALTR 
Sbjct: 242 THVTKIASMKGDAEDLGISLEISMEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSALTRC 301

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y       KK K ++ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VVES 
Sbjct: 302 INTYATNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESI 361

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V+D LS  LE  P  A  IV++ + ++  R+AAR+AR+L + K  +DIA+LPGKLADC E
Sbjct: 362 VSDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIATLPGKLADCQE 421

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P+ SELF+VEG+SAGG+AKQGR+R+ QA+L LRGKILNVER   D++ SS EIG+LIT
Sbjct: 422 KAPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLIT 481

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG + FDI K RYHKIIIMTDADVDG+HIRTL+LTFFFR M  +I  G+LYI +P
Sbjct: 482 AIGAGIGSEHFDIEKARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQP 541

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY +T+     Y+KD+E+ E+Y+IN ++         S      N+LR  ++  +    
Sbjct: 542 PLYKVTKNAKDTYIKDDETFEEYIINSAVKRLTL----SGTATEFNNLRLILNKCVSTSN 597

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
           + K++     +  +E  +I         ++  +S A ++   L  +  +           
Sbjct: 598 ISKNYDREIPQNLLESLLIL-------SKKNALSSADEILKYLKLMYSEYTWEVEIKDEE 650

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            +I + ++ +G+ ++++   S +     +      + I   +     L     +I+IT P
Sbjct: 651 KEIHISKLFQGLADKYIFALSMLEGKDMQNILSLLDGISNLFNGDSFLKSQETEIRITSP 710

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            +L   I   G+KG+++QR+KGLGEMNA QLW+TTLNP+ R+LL+V+I D  +AD +FS 
Sbjct: 711 STLAKIIMDYGKKGLTLQRFKGLGEMNADQLWDTTLNPEARTLLKVEIKDCEEADSIFSI 770

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGD VEPRR+FI  N+L    +DI
Sbjct: 771 LMGDIVEPRRDFINSNALNVHDVDI 795


>gi|89898825|ref|YP_521296.1| DNA gyrase subunit B [Rhodoferax ferrireducens T118]
 gi|89343562|gb|ABD67765.1| DNA gyrase subunit B [Rhodoferax ferrireducens T118]
          Length = 870

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/834 (47%), Positives = 524/834 (62%), Gaps = 43/834 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + +Y   SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDESL G+ D I 
Sbjct: 44  ASEAYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDESLAGHCDDIL 103

Query: 66  VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           VT++ D S +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGL
Sbjct: 104 VTIHSDNSVSVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 162

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSAGND 168
           HGVGVS VNALS  L+L I+R+G ++ M F  G            +  +P+ V G     
Sbjct: 163 HGVGVSCVNALSKMLRLTIRRDGKVHVMEFSRGFVQNRVTEVVNGVEVSPMKVIG-TTEK 221

Query: 169 TGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GTEV FLP S+IF    DF+Y+ L  RLRELSFLN+ V+I L D+RS +         G
Sbjct: 222 RGTEVHFLPDSEIFQQNSDFHYEILSKRLRELSFLNNGVRIRLKDERSGKE--DDFSGAG 279

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQ 282
           G+  FV+++++ K  L  +     G R      NI +++AM+WN GY+E VLCFTNNIPQ
Sbjct: 280 GVRGFVNFINKGKTVLNPNIFHALGDRQSDQDTNIGVEVAMQWNSGYNEQVLCFTNNIPQ 339

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+GLR+A+TR I  Y++ S  +KK K  V GDD REG T VLS+K+P+P+FSSQ
Sbjct: 340 RDGGTHLTGLRAAMTRVINKYIDDSELAKKAKVEVTGDDMREGLTCVLSVKVPEPKFSSQ 399

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEVR  VE  V+  L  +L+E P +AKIIV K+++A+  R+AAR+ARD+TRRK
Sbjct: 400 TKDKLVSSEVRGPVEDIVSKLLYDYLQERPADAKIIVGKIIEAARAREAARKARDMTRRK 459

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           GVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+
Sbjct: 460 GVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEK 519

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQ-------DSFDINKLRYHKIIIMTDADVDGAHIRT 515
           AR++K+L+S EI TLITALGTGIG        D F++ KLRYH+IIIMTDADVDGAHI T
Sbjct: 520 ARYEKLLTSNEILTLITALGTGIGNAGGSTGSDDFNVAKLRYHRIIIMTDADVDGAHICT 579

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD + L+ +L+  +L       
Sbjct: 580 LLLTFFYRQMPELVERGHIYIAQPPLYKVKAGKEELYLKDGDELDRFLLRIALVNASVFT 639

Query: 576 -CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
             ++   +    L            +I       D   +         N ++  +  +S 
Sbjct: 640 GGENGTTLKGETLAELARKHQTTQAVIARLRNFLDAEALRSVADGVALNLDTVADAEISA 699

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
           A+ L  RL       E  +  + +   + + R   G  +  VL    +           +
Sbjct: 700 AA-LQARLPDAEVAGE--FDVASDKPILRISRRHHGNIKSSVLTQDFVHGADYAVLADAA 756

Query: 695 NRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
           +  ++       ++        + K++     +  + +      S QRYKGLGEMN +QL
Sbjct: 757 STFKDLLSPGAIVMRGEGERQKEEKVSDFRQAMTWLLAQAEHATSRQRYKGLGEMNPAQL 816

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           WETT++P  R LLRV+I DA + D +F+ LMGDEVEPRREFI+ N+L +  +D+
Sbjct: 817 WETTMDPTVRRLLRVQIDDAIETDRVFTMLMGDEVEPRREFIEANALRAGNIDV 870


>gi|212703755|ref|ZP_03311883.1| hypothetical protein DESPIG_01803 [Desulfovibrio piger ATCC 29098]
 gi|212672723|gb|EEB33206.1| hypothetical protein DESPIG_01803 [Desulfovibrio piger ATCC 29098]
          Length = 799

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/809 (45%), Positives = 508/809 (62%), Gaps = 16/809 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ ++ + SYDA SI IL+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MAPDMAS-SYDASSITILEGLSAVRKRPAMYIGSTD-VRGLHHLVYEVVDNSIDEAMAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              ITV L+ D S TV D+GRGIP D+H +EG+ A +V+MT+LHAGGKF+  SYKVSGGL
Sbjct: 59  CTRITVILHADNSVTVRDDGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNNSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS WL + ++R+G  Y   +  G+  + L V G A +  GT V F P   
Sbjct: 119 HGVGVSCVNALSEWLTVTVRRDGKRYRQHYSRGVPQDQLTVIGEA-DGHGTTVRFQPDEQ 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF V +F+YDTL+ R  EL++LN  + I  ID+R+ E        +GGI  FVS L+  +
Sbjct: 178 IFEVLEFSYDTLKKRFEELAYLNKGLYIECIDERTSETH--VFHAEGGIRQFVSDLNSGQ 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +    I  +G  DN++ID A+++N GY E +L F NNI  K+GGTHL G R+ALTR I
Sbjct: 236 QGIHP-IIMAEGVVDNVAIDFALQYNAGYKETILTFANNIHTKEGGTHLVGFRTALTRAI 294

Query: 301 TSYVEKSFGSKK--DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             YV+      K     ++ GDD REG T+V+S+K+P P+F  QTK KL +SEV  +V  
Sbjct: 295 NGYVKNQPDLTKKLKGTALSGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGMVAG 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D L+ + EE+P + ++I+ K +DA+  RDAARRA++L RRKG L   SLPGKLADC 
Sbjct: 355 MVYDRLTVYFEENPKDIRLIIDKAVDAARARDAARRAKELVRRKGALSDNSLPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SELF+VEGDSAGGSAKQGR+  NQAILPLRGKILN ER RFDKML+++E+  LI
Sbjct: 415 SKDPAESELFIVEGDSAGGSAKQGRNPRNQAILPLRGKILNTERTRFDKMLANKEVKALI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+G GIG++  D++KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ   ++  G++YI +
Sbjct: 475 TAMGAGIGEEDTDLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQYQEMVEKGYVYIAQ 534

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY +   +  +++KD+  L ++L+N+ +SE++ +   +    +  DL   ++   KI+
Sbjct: 535 PPLYRVHNARMEKFIKDDAELNEFLLNR-VSEDVTVVAANGREYTGRDLIRLMETIEKIE 593

Query: 599 KLIKDFYPNHDKT--FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
             + D          F+  A      +    +  +    S L      ++ + E   H  
Sbjct: 594 LRVADAESTGMPRPLFLALATYPRAVDRALLEARDADFLSWLEKHEYALSLERE---HSE 650

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIK 715
             +   +                    S   +   ++F++  E+      SL       +
Sbjct: 651 DEDEGRVFAVFENTGSHHTRRGMEFFASRLYRQTWQLFNDLREQCGELSFSLRRKDSSSQ 710

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                 L+       RKGI++QRYKGLGEMN  QLW TT+NP+ R LL+V + DA++A D
Sbjct: 711 AGDVFDLMQMTLDEARKGINIQRYKGLGEMNPEQLWVTTMNPENRVLLQVSVEDANEASD 770

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            F  LMGD VEPRREFI+ N+L    LDI
Sbjct: 771 AFEELMGDRVEPRREFIERNALSVQDLDI 799


>gi|313671974|ref|YP_004050085.1| DNA gyrase subunit b [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938730|gb|ADR17922.1| DNA gyrase subunit B [Calditerrivibrio nitroreducens DSM 19672]
          Length = 796

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/812 (44%), Positives = 509/812 (62%), Gaps = 25/812 (3%)

Query: 1   MSD--NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+  N   +SY  +SI++L+GL+AV++RP MYIG  D   GLHH++YEV+DN+IDE++ 
Sbjct: 1   MSEILNNSENSYSEESIKVLEGLEAVRQRPGMYIGSID-VKGLHHLVYEVVDNSIDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VTL++DGS TV D+GRGIP  +H        EV+MT LHAGGKFN  +Y  SG
Sbjct: 60  GYCKNIFVTLHVDGSVTVEDDGRGIPVGIHPTAKKPTVEVVMTTLHAGGKFNSGAYFASG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS +L++ +KR+G +Y   +  GI        G   + TGT+V F P 
Sbjct: 120 GLHGVGVSVVNALSEYLEVTVKRDGKVYFQRYERGIPVTEFKEIGKT-DKTGTKVRFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           S+IF   +F++D+L  R REL+FLNS ++I  +D+ S +  +      GGI +++ +L++
Sbjct: 179 SEIFETTEFHFDSLAKRFRELAFLNSGIRIKAVDEASEKVHDFCF--DGGIVSYIKFLNK 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L   PI + G  +N+ ++ A+ +N  + E ++ F NNI  ++GGTH +G +S+ T+
Sbjct: 237 GKELLFDDPIYVSGKYENVVVECAILYNTSFDEKIISFVNNIHTEEGGTHEAGFKSSFTK 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
              +++ K     KDK S+ GDD REG ++++SIK+ +P F  QTK KL SS  +  VES
Sbjct: 297 AFNNFINKYN-LLKDKISLEGDDVREGMSAIVSIKLNEPMFEGQTKSKLGSSIGKVAVES 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +   L  + EE+ +  K I+ K + A   R+AAR+A++LTRRK  LDI++LPGKLADC 
Sbjct: 356 VLGSFLPDFFEENSVVVKKILDKAVQAYRAREAARKAKELTRRKNALDISTLPGKLADCQ 415

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SE+F+VEGDSAGGSAKQ R R  QAILPL+GKILNVE+AR+DK+LS+ EI T+I
Sbjct: 416 EKDPALSEIFIVEGDSAGGSAKQCRDRRFQAILPLKGKILNVEKARYDKLLSNNEIKTII 475

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG GIG++ FD+NKLRYHKIIIMTDADVDGAHI TLLLTFFFR M  +I  GFLYI +
Sbjct: 476 TALGCGIGKEDFDLNKLRYHKIIIMTDADVDGAHISTLLLTFFFRYMRPIIERGFLYIAR 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I + K  +Y+ +EE  ED++++  L             IS+   R  I +   ++
Sbjct: 536 PPLYKIKKNKVERYIHNEEEFEDFILDMGLDGVSI------PEISEIRYREIIRNLFVMN 589

Query: 599 KLIKDFYPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE-----KSEKS 652
           KLI  +    + +  I           E   E   S    L N L+              
Sbjct: 590 KLISKYEKKGYLEKLILNIATHQNLEPEYLSE--KSYVEDLMNMLDQKGAFEGYHSHFID 647

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++   N  +I     +  V   + +    + +   K  +  +  + E     + ++ +G+
Sbjct: 648 FNEEYNRYNIFFSSSSGSV---YAINTDFLTTPEFKEIKRLARFLNEIGGVPIKILVDGE 704

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           ++       L++ I S G+KG+++QRYKGLGEMN  QLWETT++P+ R L RV I DA +
Sbjct: 705 ELYFDKVSELVNFIESRGKKGLTIQRYKGLGEMNPEQLWETTVDPERRVLYRVTIEDAEE 764

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD LFS LMGD V PRREFI+EN+L +  +DI
Sbjct: 765 ADGLFSLLMGDVVAPRREFIEENALYAKNIDI 796


>gi|85857848|ref|YP_460050.1| DNA gyrase subunit B [Syntrophus aciditrophicus SB]
 gi|85720939|gb|ABC75882.1| DNA gyrase subunit B [Syntrophus aciditrophicus SB]
          Length = 800

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/811 (48%), Positives = 546/811 (67%), Gaps = 19/811 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+DN     Y ADSI+IL+GL+AV+ RP+MYIG    E GLHH++YEV+DN+IDE+  GY
Sbjct: 1   MTDN-----YSADSIKILEGLEAVRVRPAMYIGSIGKE-GLHHLVYEVVDNSIDEASAGY 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV + +D S  V DNGRGIP D+H E G+SAAEV+MT+LHAGGKF+  SYK+SGGL
Sbjct: 55  CDKITVKIRVDNSIMVEDNGRGIPVDMH-ETGVSAAEVVMTKLHAGGKFSNDSYKISGGL 113

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS ++L ++R+G +Y  S++ G+   PL VTG      GT++ F P   
Sbjct: 114 HGVGVSVVNALSSSMELNVRRDGKVYSQSYVRGVPTAPLAVTGQTS-GRGTKIYFKPDDT 172

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +FN+D L +RLREL+FLNS V+I+LID RS   R+   FY+GGI +FV Y++R+K
Sbjct: 173 IFEELEFNFDILANRLRELAFLNSGVRIALIDDRSD--RKSEFFYEGGIISFVEYINRNK 230

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           K L + PI + G R++ ++++A+++ND Y EN+  F N+I   +GGTHLSG RSALTR  
Sbjct: 231 KVLHKDPIYVSGEREDSTVEVALQYNDTYTENIFSFANSINTTEGGTHLSGFRSALTRVF 290

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y   +   K  K S+ G+D REG   V+S+K+ +P+F  QTK KL +SEVR +VE  V
Sbjct: 291 NNYAVNNGLLKNGKESLRGEDLREGLACVISVKVQNPQFEGQTKTKLGNSEVRGLVEGIV 350

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + + ++LEE+P  AK ++ K L+AS  R+AARRAR+LTRRK  L++ +LPGKLADC ER
Sbjct: 351 YEKIGSYLEENPSVAKQLLNKCLEASRAREAARRARELTRRKSALEVGALPGKLADCQER 410

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SEL+LVEGDSAGGSAKQGR R NQAILPLRGK+LNVE+ARFDKML ++EI T+ITA
Sbjct: 411 DPARSELYLVEGDSAGGSAKQGRDRRNQAILPLRGKVLNVEKARFDKMLQNEEIKTMITA 470

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIGQ+ +D++++RYHK+IIMTDADVDG+HIRTLLLTFFFRQM  L+  G+LYI +PP
Sbjct: 471 LGTGIGQEDYDVSRIRYHKVIIMTDADVDGSHIRTLLLTFFFRQMRELVEKGYLYIAQPP 530

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           L+ IT  K+  Y+++EE + ++++   +   I+LF   +  ++ N L N +   ++++ +
Sbjct: 531 LFKITEKKNEVYIRNEEEMNNFILQNGVKR-IKLFNGREEAVTGNQLLNLVKKVMRVETI 589

Query: 601 IKDFYPNH-DKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEKSWHGSI 657
           +  F     D+  I        F  +   +      +A + A  L     ++        
Sbjct: 590 LDKFEKEDCDRKIILALAERPSFTIQDFDDEALLKEVARQTAQALGEEVREAGVEADEEH 649

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC----NGDK 713
               +       G  ++     S   +      +    +I        S++       D+
Sbjct: 650 GGYKLFFFLQNNGKVQRISFGKSIYRAPKFSEVKAILEQISSVGKPPYSVMAIDGDGTDR 709

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            +I    SL+  + S+G+KG+S+QRYKGLGEMN  QLWETT+NP+ R+LL+V++ DA QA
Sbjct: 710 QEIPDMSSLVQFVNSVGKKGLSVQRYKGLGEMNPEQLWETTMNPEKRTLLQVRVDDAVQA 769

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D++F+ LMGD+VEPRREFI +N+L    LD+
Sbjct: 770 DEIFTTLMGDQVEPRREFIYQNALYVSNLDV 800


>gi|215433471|gb|ACJ66701.1| GyrB [Myxococcus fulvus HW-1]
          Length = 815

 Score =  831 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/805 (45%), Positives = 510/805 (63%), Gaps = 16/805 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y  DSI  L+G +AV+KRP MYIGDT    GLH ++YEV+DNA+DESL G+   I V +
Sbjct: 17  EYGTDSITKLEGREAVRKRPGMYIGDTVA-YGLHKLVYEVVDNAVDESLAGHCTDIEVVI 75

Query: 69  NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++DGS +V DNGRGIP   H +  G    EV++T LHAG KF   +YKVSGGLHGVGV+ 
Sbjct: 76  HVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTC 135

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VN LS W K+R++R G +YE S+  GI D+P    G   +  GT + F P + +  + +F
Sbjct: 136 VNFLSEWFKVRVQRNGVVYEQSYAQGIPDSPPREVG-TTDKRGTHIAFKPDATVMELVEF 194

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           N++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV YL++ K+ L   P
Sbjct: 195 NFETLSQRLRELAFLNAGLHITIRDERTNKEHD--FKFDGGISSFVEYLNKSKQTLHDKP 252

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I     R+ +++D+AM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + SY EK 
Sbjct: 253 IAFSTEREGVTLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKG 312

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VND L ++
Sbjct: 313 NLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSF 372

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEE P+ AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLADC  RDP +SEL
Sbjct: 373 LEETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQSRDPNESEL 432

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITALGTGIG 
Sbjct: 433 YIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLITALGTGIGA 492

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           + +D  K RYH+II+MTDADVDG+HIRTLLLTFFFRQMP L+  G+LYI +PPLY +TR 
Sbjct: 493 EDYDPEKARYHRIILMTDADVDGSHIRTLLLTFFFRQMPELLQKGYLYIAQPPLYKVTRN 552

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K  QYVKDE +L +YL+  +      L  D +  +   +L+  ++  +  ++ ++     
Sbjct: 553 KKDQYVKDEHALNEYLLKSASEHARVLTPDGE--LGGAELKALLEKVITYEERLEKQAKR 610

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--------KSEKSWHGSINN 659
            D   ++  V  G  + E+  +     A+  A    F           + E       + 
Sbjct: 611 RDARVVDALVQGGRLSAETLTDEAALEAAVKAAYDTFERRMPDVLGRGRHELVQDPEHHT 670

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             ++      G   + VL+ + + S          +           +     +I +   
Sbjct: 671 KKLVFHTDVNGAMRETVLDHAFLSSPEYVELSALRDAFAALGKPPYKVRVEAGEITVFSV 730

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             +L  +    ++G+ +QRYKGLGEMN  QLW+TT+NP TR+LL+V++ DA ++D++FS 
Sbjct: 731 QEVLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVRVEDAVESDEIFSL 790

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMG+ VEPRREFI+ N+L    LDI
Sbjct: 791 LMGEAVEPRREFIERNALDVQNLDI 815


>gi|313199780|ref|YP_004038438.1| DNA gyrase subunit B [Methylovorus sp. MP688]
 gi|312439096|gb|ADQ83202.1| DNA gyrase, B subunit [Methylovorus sp. MP688]
          Length = 762

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/765 (48%), Positives = 505/765 (66%), Gaps = 8/765 (1%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE----GISAAEVI 99
           M++EVLDNAIDE+L G+ D I V ++ D S +VSDNGRGIPTD+  ++      SAAE++
Sbjct: 1   MVFEVLDNAIDEALAGHCDDIKVIIHPDNSVSVSDNGRGIPTDIKHDDIKAVKRSAAEIV 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WLKL+I R G +++M F  G    PL
Sbjct: 61  MTELHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLKIYRNGQVHQMEFRRGEAVAPL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            +TG      GTEV FL S + F + +F+++ L  R+RELSFLN+ V+I LID+R+ +  
Sbjct: 121 AITG-TTERKGTEVHFLASIETFGLVEFHFEILAKRIRELSFLNNGVKIELIDQRNGKS- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                + GG+  FV Y++R K  L   P    G +D ++I+++M+WND Y E V CFTNN
Sbjct: 179 -ENFAHSGGVRGFVEYMNRSKTVLHPKPFYAVGEKDGMTIEVSMQWNDSYAETVQCFTNN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+GLR+A+TR + +Y+E++  +KK K    GDD REG T VLS+K+P+P+F
Sbjct: 238 IPQRDGGTHLTGLRTAMTRTLNNYIEQNELAKKAKIETTGDDMREGLTCVLSVKVPEPKF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVS EV+ VV+  V   L+ +L E+P++AK+I  K++DA+  RDAAR+AR++T
Sbjct: 298 SSQTKDKLVSGEVQPVVQEVVAAKLAEFLLENPVDAKVICNKIIDAARARDAARKAREMT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG +D   LPGKLADC ERDP K EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILN
Sbjct: 358 RRKGAMDTMGLPGKLADCQERDPTKCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+ARFDK+LSSQEI TLITA+GTGIG+D F  +KLRYH+IIIMTDADVDGAHIRTLLLT
Sbjct: 418 VEKARFDKLLSSQEIATLITAMGTGIGKDDFSADKLRYHRIIIMTDADVDGAHIRTLLLT 477

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF+RQM  L+  G +YI +PPLY + +GK  +Y+KD++ L+ YL+  SL     L  +  
Sbjct: 478 FFYRQMTQLVERGHIYIAQPPLYKVKQGKDERYLKDQQELDQYLLQSSLKGAELLTREGG 537

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             ++   L       +  + +I+     +D++ +              +    ++A KL 
Sbjct: 538 ETLAGEQLAEIAKQMVLTEAVIRRLASLYDESVLRALQNVEGTVELDTEANANAVAEKLR 597

Query: 640 NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
             L     +   +         + V +   G  +  V++   + S   +     S  ++ 
Sbjct: 598 PLLGHTGSEVIVAQDLETGTYRLEVNKYVHGNLQSCVVDTDFLASGDYRQISKMSVMLQG 657

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
                 S+        ++   + LD +    +  +++QRYKGLGEMN  QLWETT++P  
Sbjct: 658 LLGEGASIKRGEKSQPVSNFKAALDWLLEEAKHNLNIQRYKGLGEMNPEQLWETTMDPTV 717

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           R LL+V+I DA  AD++F+ LMGD+VEPRR FI+ N+L    LDI
Sbjct: 718 RRLLKVQIDDAIAADEIFTTLMGDQVEPRRAFIESNALGVNNLDI 762


>gi|295698376|ref|YP_003603031.1| DNA gyrase, B subunit [Candidatus Riesia pediculicola USDA]
 gi|291157393|gb|ADD79838.1| DNA gyrase, B subunit [Candidatus Riesia pediculicola USDA]
          Length = 805

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/811 (46%), Positives = 540/811 (66%), Gaps = 18/811 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++   Y++ +I++LKGL+AV+KRP MYIGDTD  +GLHHM++EV+ N+IDE+LEGY + I
Sbjct: 1   MKTDIYNSSNIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVFEVIYNSIDEALEGYCNRI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            +T++ D S +V DNGRGIPTDLH +EG+SAAEVIMT LHAGGKF+ ++YKVSGGLHGVG
Sbjct: 61  DLTIHEDNSISVLDNGRGIPTDLH-QEGVSAAEVIMTFLHAGGKFDNQTYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALSS LKL I REG  Y+ ++  G   +PL   G+     GT + F P   IF  
Sbjct: 120 ISVVNALSSRLKLVIFREGKKYQQNYKFGKPISPLTEIGTTK-VRGTFIHFWPDLQIFKN 178

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F Y +L +R++ELSFLNS++ I L D R+ +   I +  KGGI +F+ YL+  K P+
Sbjct: 179 VHTFKYSSLLNRMQELSFLNSNISIHLTDIRNNKK--IRLRNKGGIRSFIKYLNSQKIPI 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                         SI++A++WN+G+ ENVLC+TNNIPQK+GG+HL G RSA+TR +  Y
Sbjct: 237 HSKIFYFFEKEKETSIEVAVQWNEGFQENVLCYTNNIPQKEGGSHLIGFRSAITRTLKKY 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K    KK+K  +IG+D REG T+V+S+K P+P+FSSQTK+KLV+SE++S+VE+ V+  
Sbjct: 297 IQKQ--PKKNKTKIIGEDTREGLTAVISVKTPNPKFSSQTKDKLVTSEIKSIVENLVSKN 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L E+P + K I++K+L  +  R+AA++AR++ R+KG + +++LPGKLADC E++P+
Sbjct: 355 LDEYLLENPSDTKSILEKILSCARTREAAKKAREINRKKGSMILSNLPGKLADCREKNPE 414

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+++ +++L+SQE+ +L TALG 
Sbjct: 415 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSQLNRILNSQEVVSLTTALGC 474

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+   + +KLRYH +IIMTDADVDG+HIRTLLLTFF+RQMP +I  G +YI +PPLY 
Sbjct: 475 GIGEKEHNPDKLRYHSVIIMTDADVDGSHIRTLLLTFFYRQMPEIIKRGHIYIAQPPLYK 534

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI-SKNDLRNFIDDALKIDKLIK 602
           I +GK   Y++DE  + +YLI+    +       S  +I    +L+  I     I  +IK
Sbjct: 535 IKKGKMNHYIQDELKMNEYLISYISEDTTMYVNSSSKLILKGKELKKIIIQYKYIQNIIK 594

Query: 603 DFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRL---NFIAEKSEKSWHGSI 657
                + K F+E  +   V +     +Q+     A  L   L   N I EK       S 
Sbjct: 595 SCEKKYSKIFLESLIYQRVLDENCFRNQKKLKDWAEILIKYLKKKNRIGEKYNYCIRRST 654

Query: 658 N---NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD-K 713
                 D+++     G +E ++++ + I S+  K     S          +  +  G   
Sbjct: 655 QCDSYFDLIISIERYGKRENYLIDRAFIESYEYKIISENSAFFFNLNEKSIIYLKKGKNN 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           ++       L  ++    KG+ +QRYKGLGEMN  QLWETT+NP TR L++VKI DA +A
Sbjct: 715 LQFFSFEEALIWLYKKSLKGLVIQRYKGLGEMNPKQLWETTMNPKTRKLVQVKIKDAIEA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LFS LMG+EVE RR FI++N++    +DI
Sbjct: 775 NRLFSILMGNEVEKRRYFIEKNAIEVKNIDI 805


>gi|197116406|ref|YP_002136833.1| DNA gyrase subunit B [Geobacter bemidjiensis Bem]
 gi|197085766|gb|ACH37037.1| DNA gyrase, B subunit [Geobacter bemidjiensis Bem]
          Length = 796

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/807 (46%), Positives = 524/807 (64%), Gaps = 18/807 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++ +   Y AD IQIL+GL+AV+KRP+MYIG T  + GLHH++YE++DNAIDE+L GY D
Sbjct: 2   NSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQ-GLHHLVYELVDNAIDEALAGYCD 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V +++DGS TV DNGRGIPTD+H  EG SAAEV++T LHAGGKF+  SYKVSGGLHG
Sbjct: 61  AVQVIIHLDGSVTVEDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNTSYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L L I+R G+++  ++  G+   PL +TG      GT++TF P  +IF
Sbjct: 121 VGSSVVNALSTRLDLEIRRNGHVHTQTYRKGVPQAPLEITGETK-RRGTKITFFPDGEIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +F++D L  RLREL+FLN+ V+I + D+R+ +  +   FY+GGI +FV YL+++K  
Sbjct: 180 ETTEFSFDVLSKRLRELAFLNAGVRIKIHDERTEKDHD--FFYEGGIRSFVEYLNKNKNL 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +   PI I+G +  + I++AM++ND Y E V  F NNI   +GGTHL G +++LTR + +
Sbjct: 238 VNPEPIYIRGEKSGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFKASLTRTMNT 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y   +   K  K ++ GDD REG T+V+S+K+  P+F  QTK KL +SEV+  VE+ +N+
Sbjct: 298 YATANNLLKNVKVAISGDDLREGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNE 357

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +LEE+P  A+ I++K +DA+  R+AAR+AR+LTRRKG L++ +LPGKLADC E+DP
Sbjct: 358 KLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGKLADCQEKDP 417

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
              ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML+SQEI TLI+ALG
Sbjct: 418 ALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISALG 477

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           T IG++ FD+ KLRYH+II+MTDADVDG+HI TLLLTFFFRQM  LI  G+LYI +PPLY
Sbjct: 478 TSIGKEDFDMAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPPLY 537

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIEL--FCDSKGVISKNDLRNFIDDALKIDKL 600
            I RG+  QY+K+E +L+ YL+ +   E        + + V     +   +   +  ++L
Sbjct: 538 KIKRGRKEQYLKNEAALQAYLLEEGTEEMTLKLGVGNDERVYRGKQIIPILTQLIDYNEL 597

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                       + +  +             +   + L   L  + E   +       +S
Sbjct: 598 FDKVVKKGINDELLRVFLKTGIKP------GLEEMADLIALLPKMKEAFPEVTTEEFGDS 651

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
            I      R V+    +  S + S+          R+         ++   +   +    
Sbjct: 652 IIFAFGNLR-VKIDHQI-FSVLESYEYGMLLENHKRMRSVMGAGTGVVLGAEDKLVLETE 709

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
               +L       +KG+ +QRYKGLGEMN  QLWETT++ + R LL+VKI DA  A+++F
Sbjct: 710 NQEDILSFFMESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEIF 769

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMGD+VEPRR+FI++N+L    LDI
Sbjct: 770 TVLMGDQVEPRRDFIEQNALNVSNLDI 796


>gi|2827016|gb|AAC38108.1| DNA gyrase subunit B [Buchnera aphidicola]
          Length = 803

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/806 (46%), Positives = 543/806 (67%), Gaps = 15/806 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +YD+  I+IL+GLDAV+KRP MYIGDTD  SGLHHM++E++DN+IDE+L G+   I V 
Sbjct: 3   DTYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVV 62

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S ++ D+GRGIPTD+H EE ISAAEVIMT LH+GGKF+  SYK+SGGLHGVG+SV
Sbjct: 63  IHSDNSVSIKDDGRGIPTDIHPEEKISAAEVIMTVLHSGGKFDNASYKISGGLHGVGISV 122

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186
           VNALS  L+L I +    Y   + NG  ++PL + G A   TGT + F PS  IF +   
Sbjct: 123 VNALSEKLELIIYKNKKKYRQQYENGNPESPLCIIG-ATEITGTYIRFWPSYKIFTNKTQ 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+ L  RLRELSFLNS++ I L D R+    E    YKGGI+AF+ +L+++K P+  +
Sbjct: 182 FQYEILSKRLRELSFLNSNILIHLKDNRT--NLEEKYHYKGGIKAFIKFLNKNKFPINLN 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
               +  ++ I +++A++WN+ + EN+LCFTNNIPQKDGGTHLSG R+ +TR +  ++E+
Sbjct: 240 IFYFRCIKNQIELEIAIQWNNSHQENILCFTNNIPQKDGGTHLSGFRAGITRTLNLHIER 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              +KK+K  + G+D REG T+++SIK+PDP+FSSQTK+KLVSSEV+SV+ES +N+ L  
Sbjct: 300 EGYNKKNKTIITGEDTREGLTAIISIKIPDPKFSSQTKDKLVSSEVKSVIESLINENLIE 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P++AK I++K+++++ +R+AARRAR++ ++KG LD+ +LPGKL+DC E DPK SE
Sbjct: 360 YLLENPIDAKFIIQKIINSAKIREAARRAREINKKKGTLDLGTLPGKLSDCQENDPKLSE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNV++ +FDK++ SQE+ +LITALG  I 
Sbjct: 420 IYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVQKTKFDKIILSQELTSLITALGCSIT 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +  + ++KLRY+ IIIMTDADVDGAHIRTLLLTFF+RQ+P LI  G++YI +PPLY + +
Sbjct: 480 KSEYSLDKLRYNHIIIMTDADVDGAHIRTLLLTFFYRQLPELIKKGYVYIAQPPLYKVKK 539

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS-KNDLRNFIDDALKIDKLIKDFY 605
           GK  +Y+K++E +  Y I  +L E +     ++       + +  + D   I   +K   
Sbjct: 540 GKQEKYIKNDEEMNKYQIKIALKEIVIKNKKNENCNKIIKEFQKIVSDFNHIQIKMKKNK 599

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF-------IAEKSEKSWHGSIN 658
               +  + + +         ++ +  +   KL  +LN           K +++ + SI 
Sbjct: 600 NYFPELILNELIYHPRLYNLKNENVVQNWIEKLVEKLNKKDKNNTIYTSKIKRNENDSIF 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
              I + R A     Q+ L+   + S           + ++       +       KI  
Sbjct: 660 EPSIKLSRYANH--TQYDLKNDFLESKEYFLITNLGEKFKKFQENENFIEKGEKIYKIND 717

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + L+ +    ++G  +QRYKGLGEMN  QLW TT+NP+TR++L+V I DA  A++LF+
Sbjct: 718 IKNTLEWLIKETKRGFFVQRYKGLGEMNPDQLWNTTMNPETRNMLQVTIKDAISANNLFN 777

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR+FIQ+N+L +  +DI
Sbjct: 778 TLMGDLVEPRRKFIQKNALKAENIDI 803


>gi|253698660|ref|YP_003019849.1| DNA gyrase B subunit [Geobacter sp. M21]
 gi|251773510|gb|ACT16091.1| DNA gyrase, B subunit [Geobacter sp. M21]
          Length = 796

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/807 (46%), Positives = 522/807 (64%), Gaps = 18/807 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++ +   Y AD IQIL+GL+AV+KRP+MYIG T  + GLHH++YE++DNAIDE+L GY D
Sbjct: 2   NSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQ-GLHHLVYELVDNAIDEALAGYCD 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V +++DGS TV DNGRGIPTD+H  EG SAAEV++T LHAGGKF+  SYKVSGGLHG
Sbjct: 61  AVQVIIHLDGSVTVEDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNSSYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L L I+R G++Y  ++  G+   PL +TG      GT++TF P  +IF
Sbjct: 121 VGSSVVNALSTRLDLEIRRNGHVYTQTYRKGVPQAPLEITGETK-RRGTKITFFPDGEIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +F++D L  RLREL+FLN+ V+I + D+R  +  +   FY+GGI +FV YL+++K  
Sbjct: 180 ETTEFSFDVLSKRLRELAFLNAGVRIKIHDERFDKDHD--FFYEGGIRSFVEYLNKNKNL 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +   PI I+G +  + I++AM++ND Y E V  F NNI   +GGTHL G ++ALTR + +
Sbjct: 238 VNPEPIYIRGEKSGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLIGFKAALTRTMNT 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y   +   K  K ++ G+D REG T+V+S+K+  P+F  QTK KL +SEV+  VE+ +N+
Sbjct: 298 YANTNNLLKNVKVAISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNE 357

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +LEE+P  A+ I++K +DA+  R+AAR+AR+LTRRKG L++ +LPGKLADC E+DP
Sbjct: 358 KLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGKLADCQEKDP 417

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
              ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML+SQEI TLI+ALG
Sbjct: 418 ALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISALG 477

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           T IG++ FDI KLRYH+II+MTDADVDG+HI TLLLTFFFRQM  LI  G+LYI +PPLY
Sbjct: 478 TSIGKEDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPPLY 537

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIEL--FCDSKGVISKNDLRNFIDDALKIDKL 600
            I RG+  QY+K+E +L+ YL+ +   E          + V     +   +   +  ++L
Sbjct: 538 KIKRGRKEQYLKNEAALQAYLLEEGTEEMTLKLGVGSDERVYRGKQIIPILTQLIDYNEL 597

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                       +    +             +   + L   L  + E   +       +S
Sbjct: 598 FDKVVKKGINDELLSVFLKTGIKP------GLEEMADLIALLPKMKEAFPEVTTEEFGDS 651

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
            I      R V+    +  + + S+          R+     T   ++   +   +    
Sbjct: 652 IIFAFGNLR-VKIDHQI-FTVLESYEYGMLLESHKRMRSVMGTGTGVVLGAEDKVVLETE 709

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
               +L       +KG+ +QRYKGLGEMN  QLWETT++ + R LL+VKI DA  A+++F
Sbjct: 710 SQEDILSFFMESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEIF 769

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMGD+VEPRR+FI++N+L    LDI
Sbjct: 770 TVLMGDQVEPRRDFIEQNALNVSNLDI 796


>gi|302035397|ref|YP_003795719.1| DNA gyrase subunit B [Candidatus Nitrospira defluvii]
 gi|300603461|emb|CBK39791.1| DNA gyrase, subunit B [Candidatus Nitrospira defluvii]
          Length = 824

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/820 (46%), Positives = 532/820 (64%), Gaps = 23/820 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S   ++ SY AD I++L+GLDAV+KRP+MYIG T G  GLHH++YEV+DN++DE + G+ 
Sbjct: 10  SAKPKSDSYSADQIKVLEGLDAVRKRPAMYIGST-GVDGLHHLVYEVVDNSVDEHMAGFG 68

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I VT+++DGS TV DNGRGIPT +H  +  SAAEV +T LHAGGKF Q +Y VSGGLH
Sbjct: 69  EAIEVTIHIDGSVTVVDNGRGIPTGMHSTQKKSAAEVALTVLHAGGKFEQGAYTVSGGLH 128

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS WL+L I ++G ++E  +  G    PL VTG      GT+V F P   I
Sbjct: 129 GVGISVVNALSEWLELEIWQDGQVFEQRYERGKPQAPLAVTGKTK-RRGTKVRFKPDGQI 187

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F   +F++D L  RLREL+FLN  + I+L D R  + +     YKGGI +FV +L+  K 
Sbjct: 188 FETLEFSFDVLAQRLRELAFLNKGLSITLKDDRKEKEQ--VFHYKGGIVSFVDHLNEAKT 245

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           PL   PI +Q  R ++ +++A+++NDGY EN+  F NNI  K+GGTHL G ++ALTR I 
Sbjct: 246 PLH-KPIYVQTERADLILEVALQYNDGYAENLFSFANNINTKEGGTHLVGFKAALTRTIN 304

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY   +   KKD  S+ GDD REG T+V+S+K+ +P+F  QTK KL +SEV+ +VE+ VN
Sbjct: 305 SYANANDLLKKDTESLSGDDVREGLTAVVSVKVRNPQFEGQTKAKLGNSEVKGIVEAAVN 364

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D L  + EE+P  A+ I+ K +DA+  R+AAR+A+DL RRK  LD  SLPGKLADCSE+D
Sbjct: 365 DALGTYFEENPPVARKIIGKAIDAARAREAARKAKDLIRRKSALDGGSLPGKLADCSEKD 424

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSS EI TLI AL
Sbjct: 425 PALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSDEIRTLILAL 484

Query: 482 GTGIG----------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           GTGIG          +++FDI + RYHKI++MTDADVDG+HIRTLLLTFFFRQMP L+  
Sbjct: 485 GTGIGRKKEDSDKPDKEAFDIARTRYHKIVLMTDADVDGSHIRTLLLTFFFRQMPELLER 544

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPL+ + +GK+ +Y+KDE ++ +YL + ++ E      + +  +S   L   +
Sbjct: 545 GYIYIAQPPLFKVKKGKTERYLKDEPAMNEYLADLAVEEVEVALENGREYLSGRRLLPTL 604

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              +  + L+      H +  + +  +          +   +LA+ +AN    +A    K
Sbjct: 605 KKLISFESLLHKVNKKHHEANMLRVFVDEPGLTREALKDQAALATIVANAKATLALVYPK 664

Query: 652 S-------WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
           +             +S ++ K    G+  Q  +    + S   +  +  +          
Sbjct: 665 AEPTIDILEDEEHQSSKLVCKVATGGIAYQLDVTHELVGSADFRELQKQAPSAMGLGKPP 724

Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             +   G ++   G   L+  I   G++G+++QRYKGLGEMN  QLWETT++P+ R+LLR
Sbjct: 725 YKIKIKGTEVHKNGSAELVQAILEEGKQGLNIQRYKGLGEMNPGQLWETTMDPEKRTLLR 784

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           VK+ D +  D++F+ LMGDEVEPRR FIQ+++L    LD+
Sbjct: 785 VKLEDMTGVDEIFTILMGDEVEPRRNFIQQHALEVRNLDV 824


>gi|21672304|ref|NP_660371.1| DNA gyrase subunit B [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|22654250|sp|P29435|GYRB_BUCAP RecName: Full=DNA gyrase subunit B
 gi|21622902|gb|AAM67582.1| DNA gyrase subunit B [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 803

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/806 (46%), Positives = 543/806 (67%), Gaps = 15/806 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +YD+  I+IL+GLDAV+KRP MYIGDTD  SGLHHM++E++DN+IDE+L G+   I V 
Sbjct: 3   DTYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVV 62

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S ++ D+GRGIPTD+H EE ISAAEVIMT LH+GGKF+  SYK+SGGLHGVG+SV
Sbjct: 63  IHSDNSVSIKDDGRGIPTDIHPEEKISAAEVIMTVLHSGGKFDNASYKISGGLHGVGISV 122

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186
           VNALS  L+L I +    Y   + NG  ++PL + G A   TGT + F PS  IF +   
Sbjct: 123 VNALSEKLELIIYKNKKKYRQQYKNGNPESPLCIIG-ATEITGTYIRFWPSYKIFTNKTQ 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+ L  RLRELSFLNS++ I L D R+    E    YKGGI+AF+ +L+++K P+  +
Sbjct: 182 FQYEILSKRLRELSFLNSNILIHLKDNRT--NLEEKYHYKGGIKAFIKFLNKNKFPINLN 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
               +  ++ I +++A++WN+ + EN+LCFTNNIPQKDGGTHLSG R+ +TR +  ++E+
Sbjct: 240 IFYFRCIKNQIELEIAIQWNNSHQENILCFTNNIPQKDGGTHLSGFRAGITRTLNLHIER 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              +KK+K  + G+D REG T+++SIK+PDP+FSSQTK+KLVSSEV+SV+ES +N+ L  
Sbjct: 300 EGYNKKNKTIITGEDTREGLTAIISIKIPDPKFSSQTKDKLVSSEVKSVIESLINENLIE 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P++AK I++K+++++ +R+AARRAR++ ++KG LD+ +LPGKL+DC E DPK SE
Sbjct: 360 YLLENPIDAKFIIQKIINSAKIREAARRAREINKKKGTLDLGTLPGKLSDCQENDPKLSE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNV++ +FDK++ SQE+ +LITALG  I 
Sbjct: 420 IYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVQKTKFDKIILSQELTSLITALGCSIT 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +  + ++KLRY+ IIIMTDADVDGAHIRTLLLTFF+RQ+P LI  G++YI +PPLY + +
Sbjct: 480 KSEYSLDKLRYNHIIIMTDADVDGAHIRTLLLTFFYRQLPELIKKGYVYIAQPPLYKVKK 539

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS-KNDLRNFIDDALKIDKLIKDFY 605
           GK  +Y+K++E +  Y I  +L E +     ++       + +  + D   I   +K   
Sbjct: 540 GKQEKYIKNDEEMNKYQIKIALKEIVIKNKKNENCNKIIKEFQKIVSDFNHIQIKMKKNK 599

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF-------IAEKSEKSWHGSIN 658
               +  + + +         ++ +  +   KL  +LN           K +++ + SI 
Sbjct: 600 NYFPELILNELIYHPRLYNLKNENVVQNWIEKLVEKLNKKDKNNTIYTSKIKRNENDSIF 659

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
              I + R A     Q+ L+   + S           + ++       +       KI  
Sbjct: 660 EPSIKLSRYANH--TQYDLKNDFLESKEYFLITNLGEKFKKFQENENFIEKGEKIYKIND 717

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             + L+ +    ++G  +QRYKGLGEMN  QLW TT+NP+TR++L+V I DA  A++LF+
Sbjct: 718 IKNTLEWLIKETKRGFFVQRYKGLGEMNPDQLWNTTMNPETRNMLQVTIKDAISANNLFN 777

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPRR+FIQ+N+L +  +DI
Sbjct: 778 TLMGDLVEPRRKFIQKNALKAENIDI 803


>gi|323699691|ref|ZP_08111603.1| DNA gyrase, B subunit [Desulfovibrio sp. ND132]
 gi|323459623|gb|EGB15488.1| DNA gyrase, B subunit [Desulfovibrio desulfuricans ND132]
          Length = 799

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/803 (44%), Positives = 504/803 (62%), Gaps = 8/803 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y+A+SI +L+GL+AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ GY D I
Sbjct: 1   MSEKQYNAESITVLEGLEAVRKRPAMYIGSTD-IRGLHHLVYEVIDNSIDEAMAGYCDKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+MD SCTV+DNGRGIP D+H +E I A +V MT LHAGGKF+  SYKVSGGLHGVG
Sbjct: 60  KVTLHMDNSCTVTDNGRGIPVDIHPKEKIPAVQVAMTTLHAGGKFDNDSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALS +++  +KR+G  + M F  G +   L   G A + TGT   F P  DIF V
Sbjct: 120 VSCVNALSEFMETTVKRDGKTWRMKFERGHVVKGLEEVGPA-DSTGTSQRFRPDEDIFEV 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD L+ R +EL++LNS ++I   D+R+PE +     + GGI+ +V  ++ +    +
Sbjct: 179 NQFDYDVLRKRFKELAYLNSGLEIEFKDERNPESKPEIFKFTGGIKQYVKDINSNLTT-I 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              +  +G  +N+ ++ A+++   Y EN   F NNI   +GGTHL+G ++ALTR I SY+
Sbjct: 238 GEIVYGEGESENMLVEFALQYTASYKENTYTFANNIRTIEGGTHLAGYKTALTRAINSYI 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           + +   KK  + + GDD REG TSV+S+K+P+P+F  QTK KL +SE   +V   + D L
Sbjct: 298 QSADLPKKLIQKLTGDDVREGLTSVISVKLPNPQFEGQTKTKLGNSEAAGLVAGVIYDKL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + EE+P EA+ I++KV+DA+  R+AAR+ARDL RRKG L   +LPGKLADC  + P+ 
Sbjct: 358 NTFFEENPKEARFIIEKVVDAARAREAARKARDLVRRKGALSDNALPGKLADCQSKSPED 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+FLVEGDSAGGSAKQGR  + QAILPLRGKILNVE+ R DKML ++EI  +ITA G G
Sbjct: 418 SEIFLVEGDSAGGSAKQGRDPKIQAILPLRGKILNVEKTRLDKMLGNKEIRAMITAFGIG 477

Query: 485 IG--QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           IG  +D  D +KLRYHKI+IMTDADVDG+HIRTLLLTFFFRQ   LI+ G +YI +PPLY
Sbjct: 478 IGHEEDEKDYSKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQYEELINRGHIYIAQPPLY 537

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
             ++GK  +++KD+  L+++L+ + +  ++ +   +  V+    L   +D    +     
Sbjct: 538 RASKGKFERFIKDDVELDNFLLER-VGGDLSVKTGNGKVLEGQKLIGVMDKIRFLRTRFH 596

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
           +         + + +++                    +      +   ++ H +  + D 
Sbjct: 597 EAETVGIDAILYRKLLNFPERISYTYFEEHDPEKFKRDFETNGYQVQIETEHDAEMDKDR 656

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT-ILSLICNGDKIKITGPCS 721
                      +  L     +S   K        ++E        L    ++  ++G  S
Sbjct: 657 TYLDFENENGHRTRLAMEFFYSKLYKTAYNTYGELKEVCGGFEFVLDLKEEQRPVSGFFS 716

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L D +     +G S+QRYKGLGEMN  QLWETT+NP+ R++LRV I DA+ A+D+F  LM
Sbjct: 717 LYDAVIEEAHRGWSIQRYKGLGEMNPEQLWETTMNPENRTMLRVTIEDAAAANDIFVDLM 776

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           GD VEPRREFI++N+L    LDI
Sbjct: 777 GDNVEPRREFIEKNALAVQELDI 799


>gi|108758234|ref|YP_628545.1| DNA gyrase subunit B [Myxococcus xanthus DK 1622]
 gi|108462114|gb|ABF87299.1| DNA gyrase, B subunit [Myxococcus xanthus DK 1622]
          Length = 815

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/805 (45%), Positives = 506/805 (62%), Gaps = 16/805 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y  DSI  L+G +AV+KRP MYIGDT    GLH ++YEV+DNA+DESL G+   I V +
Sbjct: 17  EYGTDSITKLEGREAVRKRPGMYIGDTMA-YGLHKLVYEVVDNAVDESLAGHCTDIEVVI 75

Query: 69  NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++DGS +V DNGRGIP   H +  G    EV++T LHAG KF   +YKVSGGLHGVGV+ 
Sbjct: 76  HVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTC 135

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VN LS W K+R+ R G +YE ++  G+ D P    G   +  GT + F P + +  + +F
Sbjct: 136 VNFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVG-TTDKRGTHIAFKPDATVMELVEF 194

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           N++TL  RLREL+FLN+ + I + D+R+ +  +    + GGI +FV YL++ K+ L   P
Sbjct: 195 NFETLSQRLRELAFLNAGLHIVVRDERTNKEHD--FKFDGGISSFVEYLNKSKQTLHDKP 252

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I     R+ + +D+AM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + SY EK 
Sbjct: 253 ISFSTEREGVMLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKG 312

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VND L ++
Sbjct: 313 SLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSF 372

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEE P+ AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLADC  RDP +SEL
Sbjct: 373 LEETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQSRDPNESEL 432

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITALGTGIG 
Sbjct: 433 YIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLITALGTGIGA 492

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           + +D  K RYH+II+MTDADVDG+HIRTLLLTFFFRQMP L+  G+LYI +PPLY +TR 
Sbjct: 493 EDYDPEKARYHRIILMTDADVDGSHIRTLLLTFFFRQMPELLQKGYLYIAQPPLYKVTRN 552

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K  QYVKDE +L +YL+   ++ E        G +   +L+  ++  +  ++ ++     
Sbjct: 553 KKDQYVKDEHALNEYLLK--IASEHARVLTPGGELGGAELKALLEKVITYEERLEKQAKR 610

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--------KSEKSWHGSINN 659
            D   ++  V     + E+  +     A+  A    F           + E       + 
Sbjct: 611 RDARVVDALVQGARLSAETLTDEAALEAAVKAAYDTFERRMPDVLGRVRHELVQDPEHHT 670

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             ++      G   + VL+ + + S          +           +  +  +I +   
Sbjct: 671 KKLVFHTDVNGAMRETVLDHAFLSSPEYLELSSLRDAFVALGKAPYKVRVDAGEITVFSV 730

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             +L  +    ++G+ +QRYKGLGEMN  QLW+TT+NP TR+LL+V++ DA ++D++FS 
Sbjct: 731 QEVLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVRVEDAVESDEIFSL 790

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMG+ VEPRREFI+ N+L    LDI
Sbjct: 791 LMGEAVEPRREFIERNALDVQNLDI 815


>gi|46446709|ref|YP_008074.1| DNA gyrase subunit B [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400350|emb|CAF23799.1| probable DNA gyrase subunit B [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 835

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/826 (42%), Positives = 512/826 (61%), Gaps = 28/826 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            IQ   YDA SI +L+GL AV++RP MYIGDT G +GLHH++YEV+DN IDE++ GY   
Sbjct: 12  KIQLKEYDASSITVLEGLQAVRERPGMYIGDT-GVNGLHHLVYEVIDNCIDEAMAGYCTA 70

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           I V L+ D S ++ D+GRGIP + H+ E       +SA EV+MT LHAGGKF++ +YKVS
Sbjct: 71  IDVVLHKDNSISIEDDGRGIPVERHENESRKQGREVSAIEVVMTILHAGGKFDKDTYKVS 130

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS  + +++ + G ++E+ F  G +  P+ V G      GT+V F P
Sbjct: 131 GGLHGVGVSCVNALSKKMIVQVCKNGLMHEIEFSQGKVVKPVQVIGETT-KRGTKVWFWP 189

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             ++ +  DF+YD L  R REL+FLN  + I   D++  E  ++   Y+GG+ +FVSYL+
Sbjct: 190 DPEVMTTIDFDYDILAKRFRELAFLNKGINIFFRDEKHAEKEDVNFCYQGGLSSFVSYLN 249

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +K+PL  +PI   G +      I  ++AM+WNDGY E +  + NNIP + GG+HL+G  
Sbjct: 250 ENKEPLFSNPIYFHGVKPGDDAPIEFEVAMQWNDGYSETIFSYVNNIPTRQGGSHLTGFS 309

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + +Y++     K DK S+ G+D REG T+V+S+K+ +P+F  QTK++L +S+V 
Sbjct: 310 TALTRVLNNYIKNHNLLKSDKISINGEDMREGLTAVISVKVANPQFEGQTKQRLGNSDVG 369

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SVV+  V + L+ +L+E+P  AK+I  K + A+  R+AAR+AR+LT RK  LD A LPGK
Sbjct: 370 SVVQQIVGEELAIFLDENPSMAKLITDKAIIAAQAREAARKARELTLRKSALDSARLPGK 429

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E++P   E+++VEGDSAGGSAK GR R  QAILP+RGKILNVE+AR +K+L + E
Sbjct: 430 LTDCQEKNPALCEIYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLQNTE 489

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +GT++ ALG GIG+D F++ KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP+L+ N F
Sbjct: 490 VGTMVAALGCGIGKDGFNLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPALVENNF 549

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY ++R K+ +Y+  E  ++DYL+   LS+        + ++S  + +  +  
Sbjct: 550 IYIAQPPLYRVSRKKTSRYIHSEREMDDYLLELGLSDIQIKLASRENILSLEETKKLVST 609

Query: 594 ALKIDKLIKDFYP-----NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
            L ++  I                  +  +   F     +    + +      L    E+
Sbjct: 610 ILAVEIFIDRIEKKGIPFREFLALKNENGLLPRFQMNLMEGARFAYSEDEFVALRQSEEE 669

Query: 649 SEKSWHGS----INNSDILVKRIA------RGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
           S++  H      I   +I  +           ++         I     +Y   FS  + 
Sbjct: 670 SQRQRHQETLASIPADEITPEMRTFKPSRLHFIELYEEGGIEEIQEPLQEYGLDFSYYMC 729

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
            N + +  +   G          ++D + + GRKGI +QRYKGLGEMNA QLWETT++P 
Sbjct: 730 ANGVILDIVEEGGKTYTYYTLREVIDFLRNNGRKGIEIQRYKGLGEMNADQLWETTMDPV 789

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            R+L++V + D   AD +F+ LMG++V PRR FI++++L    LD+
Sbjct: 790 KRTLIKVTLPDVIAADHMFTMLMGEDVPPRRAFIEQHALSVKNLDV 835


>gi|116750115|ref|YP_846802.1| DNA gyrase subunit B [Syntrophobacter fumaroxidans MPOB]
 gi|116699179|gb|ABK18367.1| DNA gyrase subunit B [Syntrophobacter fumaroxidans MPOB]
          Length = 808

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/806 (46%), Positives = 516/806 (64%), Gaps = 10/806 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   +  Y A  I +L+GL AV+KRPSMYIG+   E GLHH++YEV+DN+IDE+L G+ D
Sbjct: 8   ERNSHDEYTAQQITVLEGLSAVRKRPSMYIGNVSTE-GLHHLVYEVVDNSIDEALVGHCD 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I + +++DGS TV DNGRGIP D H++E + A +V+MT LHAGGKF+  SYKVSGGLHG
Sbjct: 67  SIKIQIHLDGSVTVDDNGRGIPVDTHEKENLPAVQVVMTMLHAGGKFDDASYKVSGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS +L++ I+REG +Y   +  G    PL+V G      GT VTF P ++IF
Sbjct: 127 VGVSVVNALSEYLEVEIRREGKVYYQRYERGEAKTPLIVKGET-QRRGTRVTFKPDTEIF 185

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +  + ++D L  RLREL+FLN  V I L D+R P+ R+     +GG+ +FV YL+++K+P
Sbjct: 186 TDTEISFDILAQRLRELAFLNRGVSIELSDERIPKDRQYCY--EGGLVSFVEYLNKNKEP 243

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    I + G +  +SID+A+++N  Y+E +  F NNI  K+GGTHL G ++ LTR I  
Sbjct: 244 LYPEVIYVGGEKQGVSIDIAIQYNQTYNEKIFTFANNINTKEGGTHLVGFKTGLTRSIKQ 303

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  ++  +K D   +IGDD REG T+++S+K+  P+F  QTK KL +S+V+ +VE+ V +
Sbjct: 304 YATQNKMAKADLDKMIGDDVREGLTAIVSVKLSQPQFEGQTKTKLGNSDVKGLVENLVYE 363

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS + EE+P   + I+ KVL+A+  R+AAR+A++LTRRKGVL   SLPGKLADC ERDP
Sbjct: 364 KLSIFFEENPKVIRTILDKVLEAARAREAARKAKELTRRKGVLSDHSLPGKLADCQERDP 423

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILNVE++RFDKM+ +QEI T+I+ALG
Sbjct: 424 SRSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRFDKMVENQEIRTMISALG 483

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG+D ++  KLRYHK IIMTDADVDGAHIRTLLLTFFFR MP LI  G L+I +PPLY
Sbjct: 484 TGIGKDEYNPEKLRYHKTIIMTDADVDGAHIRTLLLTFFFRMMPELIERGHLFIAQPPLY 543

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +  GK   Y+KD+ESL+ YL++++  ++      S   +    L   +    +    ++
Sbjct: 544 RLAVGKQEFYMKDDESLDAYLLSRAADKKQVFLAGSAKPLPPEQLIQLMRAYSRYKDWLE 603

Query: 603 DFYPNH-DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
                   +  IE  +        S  E   ++            E             D
Sbjct: 604 RQSQKGVPRDVIEHVIRIYSIRKLSPAEHEENIGVLRTELEKAGFEIVSIEDEEEHQGYD 663

Query: 662 ILVKR--IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD-KIKITG 718
           + ++R  +A G      L  + + S   K      N   E +      + +G  + +   
Sbjct: 664 LEIRRPGVANG-GTGVRLGYAFLQSIEFKKLLELYNNHLEIFNQTPYAVKDGQGEARFDH 722

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  L   +    RKG ++QRYKGLGEMN  QLWETT+NP+ R+LL+V++ D   AD+LF+
Sbjct: 723 PGDLFRFLTEEARKGTNIQRYKGLGEMNPEQLWETTMNPEKRTLLQVRVEDQYLADELFT 782

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR+FIQ N+L    LDI
Sbjct: 783 TLMGDRVEPRRDFIQFNALDFRELDI 808


>gi|160895453|ref|YP_001561035.1| DNA gyrase subunit B [Delftia acidovorans SPH-1]
 gi|160361037|gb|ABX32650.1| DNA gyrase, B subunit [Delftia acidovorans SPH-1]
          Length = 859

 Score =  826 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/850 (46%), Positives = 527/850 (62%), Gaps = 54/850 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   +S Y   +IQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L GY D
Sbjct: 15  EGSDSSGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGYCD 74

Query: 63  IITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            I VT++ DGS +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVS
Sbjct: 75  DILVTIHADGSLSVIDNGRGIPTRVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVS 133

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSA 165
           GGLHGVGVS VNALS WLKL ++R+G +YE+ F  G            +  +P+ V G +
Sbjct: 134 GGLHGVGVSCVNALSIWLKLNVRRDGEVYEIDFSRGHVQNRPIEIVDGVEVSPMRVVGKS 193

Query: 166 GNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            +  GT+V FLP ++IF+    F Y+ L  RLRELSFLN+ V+I L D+R  + RE    
Sbjct: 194 -DKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDER--DGREDDFS 250

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVL 274
             GG+  FV +++ +KK L  +     G+R            I +++AM+WND Y E VL
Sbjct: 251 GAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVAMQWNDSYAEQVL 310

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+
Sbjct: 311 CFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKV 370

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K++DA+  R+AAR+
Sbjct: 371 PEPKFSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPNDAKILCSKIVDAARAREAARK 430

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLR
Sbjct: 431 AREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLR 490

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLRYHKIIIMT 504
           GKILNVE+AR++K+L+S EI TLITALGTGIG+          D FD NKLRYH+IIIMT
Sbjct: 491 GKILNVEKARYEKLLTSNEIVTLITALGTGIGKATAESGKSGSDDFDPNKLRYHRIIIMT 550

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+KD  +L  YL+
Sbjct: 551 DADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEELYIKDGPALNQYLL 610

Query: 565 NQSLSEEIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
             +L         +    +   +L    +  L  + +I       D   + +A+  GV  
Sbjct: 611 RIALMNASVSTGGANPRTLDGEELAKLANMHLAAETVIDRLSNFMDAEAL-RAIADGVQI 669

Query: 624 CESDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
                E   + A  L  +L  +       +             + + R   G  +  +L 
Sbjct: 670 TLDSIEAAQACAPILEAKLRELTTTGVPAEVTAEIDPVSEKPVLRISRHHHGNIKSSILT 729

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI----KITGPCSLLDTIFSIGRKGI 734
              + S         +            +     +     K       +  +     +  
Sbjct: 730 QEFVRSHDYAALADEAQNFNGLLGEGAKVTRGEGEKAKSDKAGDFRQAMQWLLHEAERTT 789

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           + QRYKGLGEMN  QLWETT++P  RSLL+V+I DA +AD +F+ LMGDEVEPRREFI+ 
Sbjct: 790 ARQRYKGLGEMNPEQLWETTMDPTVRSLLQVQIGDAIEADRVFTMLMGDEVEPRREFIET 849

Query: 795 NSLPS-ALDI 803
           N+L +  +D+
Sbjct: 850 NALRAGNIDV 859


>gi|220903291|ref|YP_002478603.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867590|gb|ACL47925.1| DNA gyrase, B subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 801

 Score =  826 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/810 (45%), Positives = 505/810 (62%), Gaps = 16/810 (1%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+  N  +  Y A SI IL+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ G
Sbjct: 1   MALQNPVDGGYTASSITILEGLSAVRKRPAMYIGSTDA-RGLHHLVYEVVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   ITV L+ D S TV D+GRGIP D+H +EG+ A +V+MT+LHAGGKF+  SYKVSGG
Sbjct: 60  FCTRITVILHADNSVTVRDDGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNTSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS  L + ++R+G  Y   +  G+  + L V G   +  GT V F P  
Sbjct: 120 LHGVGVSCVNALSEDLTVTVRRDGKRYRQRYSRGLPQDELTVIGEGVDGHGTTVRFKPDE 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF V +F+YDTL+ R  EL++LN  + I  ID+R  E        +GGI  FVS L+  
Sbjct: 180 EIFEVSEFSYDTLKKRFEELAYLNKGLFIECIDERIGETH--VFHAEGGIRQFVSDLNSG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++ +    I  +G  DN+++D A+++N GY EN+L F NNI  K+GGTHL G R+ALTR 
Sbjct: 238 EQGIHS-IIFGEGVVDNVTVDFALQYNAGYKENILTFANNIRTKEGGTHLVGFRTALTRA 296

Query: 300 ITSYVEKSFGS--KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           I  Y++       K    S+ GDD REG T+V+S+K+P P+F  QTK KL +SEV  +V 
Sbjct: 297 INGYIKGQADLVKKMKNTSLSGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGLVS 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D L+ + EE+P + ++I++K +DA+  RDAARRA++L RRKG L   +LPGKLADC
Sbjct: 357 GVVYDRLNIYFEENPKDIRLIIEKAVDAARARDAARRAKELVRRKGALSDNALPGKLADC 416

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
             +DP +SELF+VEGDSAGGSAKQGR+  NQAILPLRGKILN ER RFDKML+++E+  L
Sbjct: 417 QSKDPSESELFIVEGDSAGGSAKQGRNPRNQAILPLRGKILNTERTRFDKMLANKEVKAL 476

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITA+G GIG+D  D+ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ   ++  GF+YI 
Sbjct: 477 ITAMGAGIGEDDTDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQYQEMVERGFVYIA 536

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY +   +  +++KD+  L  +L+++ +SE++ +   +    +   L N ++    +
Sbjct: 537 QPPLYRVHNSRMEKFIKDDAELNSFLLSR-VSEDVIVTATNGKEYTGTALSNLVERIETL 595

Query: 598 DKLIKD--FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           +  + D          F+         +    +  +  L   L  R   +  ++E+    
Sbjct: 596 ELRLDDAEMTGTPRDLFLALTTYPEQVDAAMLERQDAGLTEWLNERGYMLTLETEQ---- 651

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKI 714
           S ++ + L          Q         S   +   ++FS   EE       +     + 
Sbjct: 652 SEDDEERLFAIFENTGGHQSRRGMEFFASRLYRMTWQLFSELREECGGLDFVMRRKDGET 711

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                  L+  +    RKGI++QRYKGLGEMN  QLW TT+NP+ R LL+V + DA++A 
Sbjct: 712 PAQNLFDLMRMVLDEARKGINIQRYKGLGEMNPEQLWVTTMNPENRILLQVSVDDANEAS 771

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D F  LMGD VEPRREFI+ N+L    LDI
Sbjct: 772 DAFMELMGDRVEPRREFIERNALAVHDLDI 801


>gi|332702340|ref|ZP_08422428.1| DNA gyrase, B subunit [Desulfovibrio africanus str. Walvis Bay]
 gi|332552489|gb|EGJ49533.1| DNA gyrase, B subunit [Desulfovibrio africanus str. Walvis Bay]
          Length = 807

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/799 (46%), Positives = 506/799 (63%), Gaps = 10/799 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N  Y ADSI +L+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ GY D I V
Sbjct: 17  NGGYTADSITVLEGLAAVRKRPAMYIGSTD-IRGLHHLVYEVVDNSIDEAMAGYCDRIRV 75

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L++D S TVSDNGRGIP D+H +EG  A EV+MT+LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 76  VLHLDNSVTVSDNGRGIPVDMHPKEGKPAVEVVMTKLHAGGKFDSGSYKVSGGLHGVGVS 135

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            VNALS +L++ +KR+G  + + F  G+    L V G     TGT V F P  +IF    
Sbjct: 136 CVNALSEYLEVFVKRDGKRHHLRFERGVTVGQLTVIGEGETATGTTVRFRPDEEIFETNQ 195

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+TL  R +EL++LN  + I   D+R  +       Y GGI +FV  L+  +  L   
Sbjct: 196 FSYETLSKRFQELAYLNDGLTIEFKDERESKE--EAYCYHGGIVSFVRDLNEGQGFLH-D 252

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I + G  D++ + LAM++N GY ENVL F NNI  K+GGTHL G ++ALTR + +YVEK
Sbjct: 253 IIDVSGEVDSVIVSLAMQYNAGYKENVLTFANNIRTKEGGTHLVGFKTALTRAVNNYVEK 312

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               KK K+ V GDD REG T+V+S+K+P+P+F  QTK KL +SE+  +V S V + L  
Sbjct: 313 GDLPKKLKQKVSGDDVREGLTAVVSVKLPNPQFEGQTKTKLGNSEIAGIVSSQVYERLMT 372

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P +AK I++K++D++  R+AAR+ARDL RRKG L   SLPGKLADC  + P++SE
Sbjct: 373 FFEENPNDAKAIIEKIVDSARAREAARKARDLVRRKGALSDHSLPGKLADCQSKKPEESE 432

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSAGGSAKQGR    QAILPLRGKILNVER RFDKML ++EI  +ITA+G GI 
Sbjct: 433 LFIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRFDKMLGNKEIRAMITAMGAGID 492

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D  D+ +LRYHKI+IMTDADVDGAHIRTLLLTFFFRQ   LI NGFLYI +PPL+ + +
Sbjct: 493 EDM-DLERLRYHKIVIMTDADVDGAHIRTLLLTFFFRQYRQLIDNGFLYIAQPPLFRVQK 551

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK+ +Y+ DE +L  +LI  +++ E+ L   ++  ISK  L   ++    ++  +++   
Sbjct: 552 GKNEKYIVDEPTLRSHLIE-AIAGEVTLIAPNEQEISKKKLERLLEKIAYLEAKVREAGA 610

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
                 +  +V+            +  L S L   L              ++        
Sbjct: 611 YGFSDELLLSVLEYGTRLTPASFQDGELES-LRTYLTSKGHLVWTEQEMELDELR-TFVI 668

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRI-EENYLTILSLICNGDKIKITGPCSLLDT 725
                 ++  +      S   +Y     + I +      L+L       K++G    L  
Sbjct: 669 FENENAQRTRIGVEFFNSKLYRYAYDALDTIRQATGGHELTLRKREQSYKVSGYFHALRA 728

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           +     K  ++QRYKGLGEMN  QLWETT+NP+ R++ +V + DA +AD +FS LMGD+V
Sbjct: 729 VIDEAHKEYNIQRYKGLGEMNPEQLWETTMNPENRTMFQVSVEDAEEADKIFSDLMGDQV 788

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRR+FI+ N+L    LDI
Sbjct: 789 EPRRQFIERNALSVSELDI 807


>gi|162456449|ref|YP_001618816.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56']
 gi|161167031|emb|CAN98336.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56']
          Length = 832

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/836 (44%), Positives = 509/836 (60%), Gaps = 37/836 (4%)

Query: 1   MSD-------NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           M++       ++  +SYDA SI  L+GL+AV+KRP MYIGD    SGLHH+++E +DNA+
Sbjct: 1   MTEPTLSQPTDLTKASYDAHSITALEGLEAVRKRPGMYIGDVHDGSGLHHLVWEAVDNAV 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE L G    I VT++ DGS ++ DNGRGIP  +H + G+SAAEV+MT LHAGGKF+  S
Sbjct: 61  DEHLAGACTEIRVTVHFDGSVSIEDNGRGIPVGMHAK-GVSAAEVVMTVLHAGGKFDNSS 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVS GLHGVGVS VNA+S WLKL IKREG ++   +  G+   PL   G   + TGT++
Sbjct: 120 YKVSAGLHGVGVSAVNAVSEWLKLEIKREGKLWFQEYARGVPKAPLKGIGVT-DKTGTKL 178

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           TF P   +FS  +F++D L  RLREL+FLN+ + I L D+R  + R     YKGGI  FV
Sbjct: 179 TFKPDPVVFSTVEFSFDVLASRLRELAFLNAGLIIHLHDQRP-DGRAEIYEYKGGISEFV 237

Query: 234 SYLDRHKKPLMQSPIRI-----------------QGSRDNISIDLAMRWNDGYHENVLCF 276
           S L++ K+P+    I                     +   + +++A++WN  Y E + C+
Sbjct: 238 SLLNKTKEPIHDDVISFVSQHEVGAAGDGANGRGSAATPPVGVEVALQWNGSYTEAIFCY 297

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNN+  KDGGTHL+GLR+ALT+ I +Y       K+ K+ + G+D REG T VLSIK PD
Sbjct: 298 TNNVHNKDGGTHLTGLRAALTKTINNYGSAHNLFKELKQGLQGEDAREGLTCVLSIKHPD 357

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F SQTK KLVSSEV+ +VE+ V+D L  + EE+P  AK I++K + A      A R  
Sbjct: 358 PSFDSQTKSKLVSSEVKGIVEAAVSDKLGQYFEENPQSAKKIIEKAVVA-AKAREAARKA 416

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
               RKG LD+ SL GKLADC  +DP+KSE+++VEG+SAGGSAK GR R  QAILPL+GK
Sbjct: 417 REVIRKGSLDVTSLSGKLADCQSKDPEKSEIYIVEGESAGGSAKMGRDRHFQAILPLKGK 476

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIG-QDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           ILNVERAR D+MLSS E+GTLITALG GI     F+I+KLRY KII+MTDADVDG+HIRT
Sbjct: 477 ILNVERARLDRMLSSAEVGTLITALGCGINDAGGFEIDKLRYQKIILMTDADVDGSHIRT 536

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLTFFFRQMP ++  G+L+I +PPLY + +GK   Y+KD+ +L+++L+  ++     + 
Sbjct: 537 LLLTFFFRQMPEIMEKGYLFIAQPPLYRVRKGKRDLYLKDQGALDEFLVGNAVDGLEIVA 596

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF--NCESDQEINVS 633
             ++  I+   L        +   ++ +     D   +   + S     +   + +   +
Sbjct: 597 SGAQSGIAGQPLYRLAQRLKRFRAVLSNIDKRCDARIVAALLRSSGLGRDDLRETKKVAA 656

Query: 634 LASKLANRL-----NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
            A +L   L     +                S I V         + V++   + S   +
Sbjct: 657 AADELRAYLKQRYPDLFPLTLSTPRDTEHGTSRIEVVPRPGASARKSVIDWDLVNSPEYQ 716

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
                   +            +  +  I    SL+D I   G+KGIS+ RYKGLGEMNA 
Sbjct: 717 EAWSIEQDLRSIGAPPYRARTSSGEETIENGESLVDYIEERGKKGISISRYKGLGEMNAD 776

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +LWETT+NPD R+LL+V+I DA + D+LF+ LMGD+VEPRR FI++N+L    LDI
Sbjct: 777 ELWETTMNPDARTLLQVRIDDAVKTDELFTILMGDQVEPRRNFIEQNALNVKNLDI 832


>gi|264676139|ref|YP_003276045.1| DNA gyrase B subunit [Comamonas testosteroni CNB-2]
 gi|262206651|gb|ACY30749.1| DNA gyrase, B subunit [Comamonas testosteroni CNB-2]
          Length = 855

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/860 (45%), Positives = 527/860 (61%), Gaps = 62/860 (7%)

Query: 1   MSDNIQNSS--------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M++  +  +        Y   +IQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+
Sbjct: 1   MTEENKPDTQTAADAGGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGG 107
           IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E   SAAE+ +T LHAGG
Sbjct: 61  IDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGG 119

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------ 155
           KFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  +E+ F  G +            
Sbjct: 120 KFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGRRHEIDFSRGFVQNRLIEVVDGAE 179

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR 214
            +P+ V G A +  GT+V FLP  +IF     F Y+ L  RLRELSFLN+ V+I L D+R
Sbjct: 180 VSPMRVVG-ASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDER 238

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMR 264
             +         GG++ FV +++  KK L  +     GSR            I ++++M+
Sbjct: 239 DGKE--DDFSGAGGVKGFVQFINGTKKVLHPTTFHANGSRPAETYGGIPGTEIGVEVSMQ 296

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K  V GDD RE
Sbjct: 297 WNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNEMAKKAKVEVSGDDMRE 356

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +LEE+P +AKI+  K+++
Sbjct: 357 GLCAVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKSLTDFLEENPNDAKILCGKIIE 416

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R+AAR+AR++TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR 
Sbjct: 417 AARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRD 476

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINK 494
           R+ QAILPLRGKILNVE+AR++K+LSSQEI TLITALGTGIG+          D ++ +K
Sbjct: 477 RKFQAILPLRGKILNVEKARYEKLLSSQEIITLITALGTGIGKVSEDSGKSSSDDYNPDK 536

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+K
Sbjct: 537 LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEELYLK 596

Query: 555 DEESLEDYLINQSLSEEIELF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
           D  +L  YL+  +L+        D+   +   +L    +  L  + +I+      D   +
Sbjct: 597 DGPALNKYLLKIALNHASVNTGGDNPRTVEGEELAKLANMHLAAETVIERLSNFMDAEAL 656

Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIA 668
                      ++ +E     A  L  +L  +               +  +  + + R  
Sbjct: 657 RAIADGVQIKLDTIEEA-QECAPILEAKLRELTTTGVPADVTAEIDPNSEHPILRISRHH 715

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI----KITGPCSLLD 724
            G  +  +L    + S         +            +     +     K+      + 
Sbjct: 716 HGNIKSSILTQEFVRSHDYAALSDEAQNFVGLLGEGAKVTRGEGEKAKTEKVGDFRQAMA 775

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + S   +    QRYKGLGEMN  QLWETT++P+ RSLL+VKI DA +AD +F+ LMGDE
Sbjct: 776 WLISEAERTTGRQRYKGLGEMNPEQLWETTMDPNVRSLLQVKIGDAIEADRVFTMLMGDE 835

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR FI++N+L +  +D+
Sbjct: 836 VEPRRNFIEDNALRAGNIDV 855


>gi|310817572|ref|YP_003949930.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1]
 gi|309390644|gb|ADO68103.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 817

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/807 (45%), Positives = 512/807 (63%), Gaps = 18/807 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A+SI  L+G +AV+KRP MYIGDT    GLH ++YEV+DNA+DE+L GY   I+V +
Sbjct: 17  EYGAESITKLEGREAVRKRPGMYIGDT-MTYGLHKLVYEVVDNAVDEALAGYCTEISVDI 75

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEG---ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           ++DGS +V DNGRGIP   H +         +V++T LHAG KF   +YKVSGGLHGVGV
Sbjct: 76  HVDGSLSVQDNGRGIPVGPHPDPKFHDKDTVDVVLTELHAGSKFGNGAYKVSGGLHGVGV 135

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           + VN LS WLK+RI+R G +YE S+  GI D  +   G   +  GT V F P + +    
Sbjct: 136 TCVNFLSEWLKVRIQRNGKVYEQSYSRGIPDGKVKEVG-TTDKRGTLVWFKPDTQVMEAV 194

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           DF+++TL  RLREL+FLN+ + IS+ D+R+ +  E    + GGI +FV YL++ K+ L  
Sbjct: 195 DFDFETLSQRLRELAFLNAGLHISIRDERTNKEHE--FKFDGGIGSFVEYLNKSKQALHD 252

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++  ++ +S++LAM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + SY E
Sbjct: 253 KPIFVRTEKEGVSLELAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAE 312

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           KS   K  K +  G+D REG  +V+S+K+ +P+F  QTK KL +SE++ +VE  VND L+
Sbjct: 313 KSGLWKDLKETPTGEDAREGLAAVISVKLSNPQFEGQTKTKLGNSEIKGLVEQMVNDQLA 372

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P   K +V K+ DA   R AAR+AR+  RRKG+LD   LPGKLADC  RDPK+S
Sbjct: 373 TYLEENPSNGKKVVAKIGDACRARIAARKARETVRRKGILDGGGLPGKLADCQSRDPKES 432

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITALGTGI
Sbjct: 433 ELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIITLITALGTGI 492

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G + +D  K RY++II+MTDADVDG+HIRTLLLTFFFRQM  L+  G+LYI +PPLY +T
Sbjct: 493 GAEDYDPAKARYNRIILMTDADVDGSHIRTLLLTFFFRQMRELLDLGYLYIAQPPLYKVT 552

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           R K   YVKDE +L +YL+   ++ E        G +  ++L++ ++  +  ++ ++   
Sbjct: 553 RNKKDLYVKDERALNEYLLR--IAAEHSRVVTPNGELGGSELKSILEKVITYEERLEKQA 610

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--------KSEKSWHGSI 657
              D   ++  V +     E+  +     A       +F           K E+      
Sbjct: 611 KRRDARVVDALVQAARVKAETLADEKGLEAEVDRMYADFRKRMPDVLGRVKHERRDDPEH 670

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
           +   ++      G   + VL+ + + S            +        ++  +G ++   
Sbjct: 671 HTKKLVFHTEINGSMRETVLDHAFLSSPEYLELVALREAVTGLGRPPYTVKVDGGEVTAF 730

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
               +L  +    +KG+ +QRYKGLGEMN  QLW+TT+NP TR+LL+V++ DA ++D +F
Sbjct: 731 SVQEVLAVVRKDAQKGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVQLKDAVESDGIF 790

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           S LMG+ VEPRREFI+ N+L    LDI
Sbjct: 791 SLLMGEAVEPRREFIERNALDVQNLDI 817


>gi|221069745|ref|ZP_03545850.1| DNA gyrase, B subunit [Comamonas testosteroni KF-1]
 gi|220714768|gb|EED70136.1| DNA gyrase, B subunit [Comamonas testosteroni KF-1]
          Length = 855

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/860 (45%), Positives = 528/860 (61%), Gaps = 62/860 (7%)

Query: 1   MSDNIQNSS--------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M++  +  +        Y   +IQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+
Sbjct: 1   MTEENKPDTQSAADAGGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGG 107
           IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E   SAAE+ +T LHAGG
Sbjct: 61  IDEALAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKH-EPKRSAAEIALTELHAGG 119

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------ 155
           KFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  +E+ F  G +            
Sbjct: 120 KFNQNSYKVSGGLHGVGVSCVNALSIWLKLTVSRDGVRHEIDFSRGFVQNRLIEVVDGTE 179

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR 214
            +P+ V G + +  GT+V FLP  +IF     F Y+ L  RLRELSFLN+ V+I L D+R
Sbjct: 180 VSPMRVLGPS-DKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDER 238

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMR 264
             +         GG++ FV +++  KK L  +    +G+R            I +++AM+
Sbjct: 239 DGKE--DDFSGAGGVKGFVEFINGTKKVLHPTTFYAEGTRPAETYGGIPGTEIGVEVAMQ 296

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K  V GDD RE
Sbjct: 297 WNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNELAKKAKVEVTGDDMRE 356

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K+++
Sbjct: 357 GLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGKLLAEFLEEKPNDAKILCNKIVE 416

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R+AAR+AR++TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR 
Sbjct: 417 AARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRD 476

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINK 494
           R+ QAILPLRGKILNVE+AR++K+LSSQEI TLITALGTGIG+          D ++ +K
Sbjct: 477 RKFQAILPLRGKILNVEKARYEKLLSSQEIITLITALGTGIGKVSEDSGKSSSDDYNPDK 536

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+K
Sbjct: 537 LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEELYLK 596

Query: 555 DEESLEDYLINQSLSEEIELF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
           D  +L  YL+  +L+        D+   +   +L    +  L  + +I+      D   +
Sbjct: 597 DGPALNKYLLKIALNHASVNTGGDNPRTVEGEELAKLANMHLAAETVIERLSNFMDAEAL 656

Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIA 668
            +A+  GV       E     A  L  +L  +               +  +  + + R  
Sbjct: 657 -RAIADGVQIKLDTIEQAQECAPILEAKLRELTTTGVPADVTAEIDPNSEHPILRISRHH 715

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI----KITGPCSLLD 724
            G  +  +L    + S         +            +     +     K+      + 
Sbjct: 716 HGNIKSSILTQEFVRSHDYAALSDEAQNFVGLLGEGAKVTRGEGEKAKTEKVGDFRQAMA 775

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + S   +    QRYKGLGEMN  QLWETT++P+ RSLL+VKI DA +AD +F+ LMGDE
Sbjct: 776 WLISEAERTTGRQRYKGLGEMNPEQLWETTMDPNVRSLLQVKIGDAIEADRVFTMLMGDE 835

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR FI++N+L +  +D+
Sbjct: 836 VEPRRNFIEDNALRAGNIDV 855


>gi|219681399|ref|YP_002467784.1| DNA gyrase subunit B [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471072|ref|ZP_05635071.1| DNA gyrase subunit B [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219624242|gb|ACL30397.1| DNA gyrase subunit B [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311085760|gb|ADP65842.1| DNA gyrase subunit B [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086337|gb|ADP66418.1| DNA gyrase subunit B [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311086912|gb|ADP66992.1| DNA gyrase subunit B [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 803

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/807 (46%), Positives = 543/807 (67%), Gaps = 15/807 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + YD+ +I+IL+GLDAV+KRP MYIGDTD  SGLHHM++E++DN+IDE+L GY   I V
Sbjct: 2   KNIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPTD+H EE ISAAEVIMT LH+GGKF+  SY++SGGLHGVG+S
Sbjct: 62  TIHSDNSVSVKDDGRGIPTDIHPEENISAAEVIMTVLHSGGKFDNASYQISGGLHGVGIS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I +    Y+  + +G  +NPL + G+      T + F PS   F +  
Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENPLSIIGTTDTTG-TYIRFWPSYKTFTNNI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y+ L  RLRELSFLNS++ I L  + +    +    YKGGI+AF+ +L+  K P+  
Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYL--EDNRTSIKNCYHYKGGIKAFIKFLNAKKTPIHT 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                + ++D I +++AM+WN+ + EN+LCFTNNIPQKDGGTHL+G RS +TR +  ++E
Sbjct: 239 HIFYFRSTKDQIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMTRTLNLHIE 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           +   +KK+K ++IG+D REG T+++SIK+PDP+FSSQTK+KLVSSE RSV+ES +N+ L 
Sbjct: 299 REGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIESLINENLI 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P ++K I++K+++A+ VR+AARRAR++ ++K +LD+ +LPGKL+DC E DPK S
Sbjct: 359 EYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDCQENDPKFS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+++FDKM+ SQE+ +LITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ ++I+KLRYH IIIMTDADVDGAHIRTLLLTFF+RQ+P LI  G++YI +PPLY + 
Sbjct: 479 GKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIAQPPLYKLK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +G+  +Y+K++E +  Y I  +L + +    D+  +  K      I       ++I    
Sbjct: 539 KGRKEKYIKNDEEMNTYQIKNALKDLVLKSEDNLIINQKLKKFKKIMSEYHYIQIIMKQS 598

Query: 606 PNHDKTFI-EQAVISGVFNCESDQEINVSLASKLANRLNFIAE-------KSEKSWHGSI 657
            ++    +  + +     +   D EI       LA  LN           + +K+   +I
Sbjct: 599 KHYFPKLVFNELIYHNHLHNLKDIEIVKEWIYTLAENLNKKDNSNNHYSIEIKKNLDKNI 658

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
               I + R A     ++  +   + S             ++ +   + +  +G   KI 
Sbjct: 659 FEPTIKISRYAHY--TKYDFKEEFLKSKEYLLITNLGESFKKYFSDKVLIEKSGSTYKID 716

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
              +    +    ++G+ +QRYKGLGEMN  QLW TT+NP+TR++L+V I DA  A++LF
Sbjct: 717 SIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIKDAVSANNLF 776

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMG+ VEPRR+FI+ N+L +  +D+
Sbjct: 777 NTLMGEAVEPRRQFIENNALKAENIDV 803


>gi|299530930|ref|ZP_07044344.1| DNA gyrase, B subunit [Comamonas testosteroni S44]
 gi|298721151|gb|EFI62094.1| DNA gyrase, B subunit [Comamonas testosteroni S44]
          Length = 855

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/860 (45%), Positives = 527/860 (61%), Gaps = 62/860 (7%)

Query: 1   MSDNIQNSS--------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M++  +  +        Y   +IQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+
Sbjct: 1   MTEENKPDTQTAADAGGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGG 107
           IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E   SAAE+ +T LHAGG
Sbjct: 61  IDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGG 119

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------ 155
           KFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  +E+ F  G +            
Sbjct: 120 KFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGRRHEIDFSRGFVQNRLIEVVDGAE 179

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR 214
            +P+ V G A +  GT+V FLP  +IF     F Y+ L  RLRELSFLN+ V+I L D+R
Sbjct: 180 VSPMRVVG-ASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDER 238

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMR 264
             +         GG++ FV +++  KK L  +     GSR            I ++++M+
Sbjct: 239 DGKE--DDFSGAGGVKGFVQFINGTKKVLHPTTFHANGSRPAETYGGIPGTEIGVEVSMQ 296

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K  V GDD RE
Sbjct: 297 WNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNEMAKKAKVEVSGDDMRE 356

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +LEE+P +AKI+  K+++
Sbjct: 357 GLCAVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKSLTDFLEENPNDAKILCGKIIE 416

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R+AAR+AR++TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR 
Sbjct: 417 AARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRD 476

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINK 494
           R+ QAILPLRGKILNVE+AR++K+LSSQEI TLITALGTGIG+          D ++ +K
Sbjct: 477 RKFQAILPLRGKILNVEKARYEKLLSSQEIITLITALGTGIGKVSEDSGKSSSDDYNPDK 536

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y+K
Sbjct: 537 LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEELYLK 596

Query: 555 DEESLEDYLINQSLSEEIELF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
           D  +L  YL+  +L+        D+   +   +L    +  L  + +I+      D   +
Sbjct: 597 DGPALNKYLLKIALNHASVNTGGDNPRTVEDEELAKLANMHLAAETVIERLSNFMDAEAL 656

Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIA 668
                      ++ +E     A  L  +L  +               +  +  + + R  
Sbjct: 657 RAIADGVQIKLDTIEEA-QECAPILEAKLRELTTTGVPADVTAEIDPNSEHPILRISRHH 715

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI----KITGPCSLLD 724
            G  +  +L    + S         +            +     +     K+      + 
Sbjct: 716 HGNIKSSILTQEFVRSHDYAALSDEAQNFVGLLGEGAKVTRGEGEKAKTEKVGDFRQAMA 775

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + S   +    QRYKGLGEMN  QLWETT++P+ RSLL+VKI DA +AD +F+ LMGDE
Sbjct: 776 WLISEAERTTGRQRYKGLGEMNPEQLWETTMDPNVRSLLQVKIGDAIEADRVFTMLMGDE 835

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR FI++N+L +  +D+
Sbjct: 836 VEPRRNFIEDNALRAGNIDV 855


>gi|224367126|ref|YP_002601289.1| GyrB [Desulfobacterium autotrophicum HRM2]
 gi|223689842|gb|ACN13125.1| GyrB [Desulfobacterium autotrophicum HRM2]
          Length = 808

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/812 (44%), Positives = 517/812 (63%), Gaps = 15/812 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +N     Y A++I+IL+GL+AV+KRPSMYIG+  G  GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MKNNDNVKDYGANNIKILEGLEAVRKRPSMYIGNV-GIEGLHHLVYEVVDNSIDEAMAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S +V DNGRGIP  +H+ E I AAEV+MT+LHAGGKF++ SYKVSGGL
Sbjct: 60  CDKIIVIIHPDQSVSVEDNGRGIPVGMHETEHIPAAEVVMTKLHAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L++ + ++G +Y   +  G+    L +TG   + +GT + F P  D
Sbjct: 120 HGVGISVVNALSINLEMEVFKDGKVYFQRYSRGVKQTELEITGDT-DKSGTRILFKPDFD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           I +  +F Y+ L  R+REL+FLN  ++I + D+ S E       Y+GG+ +FV YL+R+ 
Sbjct: 179 IMNENEFEYEKLSRRMRELAFLNKGIRIIIEDELSAEK--DDFHYEGGLLSFVEYLNRNF 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +   PI I+G + ++S+D+A+++ND + E +  F NNI   +GGTHLSG + ALTR +
Sbjct: 237 TAMH-EPIHIEGEKSDVSVDVAIQYNDTFKEKIYSFANNINTIEGGTHLSGFKGALTRTL 295

Query: 301 TSYVEK-SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
            +Y    +         + GDD REG T+++S+K+ DP+F  QTK KL +SEV+ +VES 
Sbjct: 296 NNYASSGNLPKNMQNIKIGGDDVREGLTAIVSVKVMDPQFEGQTKTKLGNSEVKGIVESL 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ L+ +LEE+P  AK I+ K +DA+  RDAA+RAR+L R+KG L  ++LPGKLA+C  
Sbjct: 356 INERLAMFLEENPNTAKKIIMKAVDAARARDAAKRARELARKKGTLLDSTLPGKLAECQY 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DPK+ ELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDK+L S EI  + T
Sbjct: 416 ADPKERELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARFDKILRSDEIKNVFT 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            LGTG G++ +DI K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI NG+LYI +P
Sbjct: 476 VLGTGAGKEEYDIEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPDLISNGYLYIAQP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PL+ I +GKS  Y+KDE    DYL+ +   ++     DS+  + +  L  F+ D +    
Sbjct: 536 PLFRIGKGKSGIYLKDEPEYRDYLLKRICEQKEVRLADSEEPLPEESLFAFLKDLISFHN 595

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
            +         T +   +I      +   E    + S             + ++    N 
Sbjct: 596 AVDRLTMREMDTKLLMFLIGEGVKDKFFLEDLERMTSLKETLTAKGYIIRDITFDEERNL 655

Query: 660 SDILV----KRIARGVQEQFV-LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            ++ +        +G++   V +  S I            N+IE   L   ++       
Sbjct: 656 YEMDILGNEHDREKGIKHSLVTVGRSLIAMGDYTIMHKVLNKIESMDLPPFNVCAKSSSD 715

Query: 715 KITGPC---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           K+          + I +  +KGI++QRYKGLGEMN  QLWETT++P+ R +L+V I DA 
Sbjct: 716 KVVSFEDRTEFFNYIMAEAKKGIAIQRYKGLGEMNPDQLWETTMDPEKRVMLQVNIEDAE 775

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           +AD++F+ LMG+EVEPRR FIQ N+L   +LD
Sbjct: 776 KADEIFTLLMGEEVEPRRNFIQTNALEVSSLD 807


>gi|239813022|ref|YP_002941932.1| DNA gyrase, subunit beta [Variovorax paradoxus S110]
 gi|239799599|gb|ACS16666.1| DNA gyrase, B subunit [Variovorax paradoxus S110]
          Length = 874

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/849 (45%), Positives = 528/849 (62%), Gaps = 53/849 (6%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              ++SY   SI IL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D 
Sbjct: 30  TPADTSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDD 89

Query: 64  ITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           I VT++ D S +V+DNGRGIPT     D H E   SA+E+ +T LHAGGKFNQ SYKVSG
Sbjct: 90  IVVTIHTDNSISVTDNGRGIPTGVKMDDKH-EPKRSASEIALTELHAGGKFNQNSYKVSG 148

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSAG 166
           GLHGVGVS VNALS  L+L ++REG I+E+ F  G            +  +P+ + G   
Sbjct: 149 GLHGVGVSCVNALSVMLRLVVRREGKIHELEFSRGFVQNRLIETVNGVEVSPMRIIGET- 207

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           +  GTEV FLP ++IF    DF+Y+ L  RLRELSFLN+ V+I L D+RS +        
Sbjct: 208 DKRGTEVHFLPDTEIFKENADFHYEILSKRLRELSFLNNGVRIRLKDERSGKE--DDFSG 265

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLC 275
            GG++ FV ++++ K  L  +     G +           +I +++AM+WN GY+E VLC
Sbjct: 266 AGGVKGFVDFINKGKTVLHPNVFYAMGEKPADTYGGIPGTHIGVEVAMQWNSGYNEQVLC 325

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG   VLS+K+P
Sbjct: 326 FTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVP 385

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+FSSQTK+KLVSSEVR+ VE  V   L+ +L+E P +AKII  K+++A+  R+AAR+A
Sbjct: 386 EPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDYLQERPNDAKIICGKIVEAARAREAARKA 445

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKGVLD   LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPLRG
Sbjct: 446 REMTRRKGVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRG 505

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGI----------GQDSFDINKLRYHKIIIMTD 505
           KILNVE+AR++K+L+S EI T+ITALGTGI          G D F++ KLRYH+IIIMTD
Sbjct: 506 KILNVEKARYEKLLTSNEILTMITALGTGIGRAGATSAGGGADDFNVAKLRYHRIIIMTD 565

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           ADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK  QY+KD  +L+ +L+ 
Sbjct: 566 ADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLK 625

Query: 566 QSLSEEIELFCD-SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
            +L +        +   +S + L          + +I       D   +         + 
Sbjct: 626 VALKDASIETGGPNSTTLSGDTLAELARKHQLAEAVIARLRNFMDAEALRAIADGVALDL 685

Query: 625 ESDQEINVSLASKLANRLNF----IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           ++      S  +  A         +  +    +    +   + + R   G  +  VL   
Sbjct: 686 DTTPAAEASAVALQAKLRELNTTGVPAEVSSEFDARTDKPLLRISRRHHGNIKSSVLTQD 745

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGD-----KIKITGPCSLLDTIFSIGRKGIS 735
            +           +N       +  + +  G+     + K+      +  +        S
Sbjct: 746 FVHGADYAALAEAANTFRNLLSSEGATVRRGEGERAKEEKVADFRIAMKWLIGQAENATS 805

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
            QRYKGLGEMN +QLWETT++P  R LLRV+I DA +AD +F+ LMGDEVEPRREFI++N
Sbjct: 806 RQRYKGLGEMNPAQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRREFIEQN 865

Query: 796 SLP-SALDI 803
           +L  + +D+
Sbjct: 866 ALRAANIDV 874


>gi|15616640|ref|NP_239852.1| DNA gyrase subunit B [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132907|sp|P57126|GYRB_BUCAI RecName: Full=DNA gyrase subunit B
 gi|25292797|pir||B84931 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B
           [imported] - Buchnera sp. (strain APS)
 gi|10038703|dbj|BAB12738.1| DNA gyrase subunit B [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 803

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/807 (45%), Positives = 543/807 (67%), Gaps = 15/807 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + YD+ +I+IL+GLDAV+KRP MYIGDTD  SGLHHM++E++DN+IDE+L GY   I V
Sbjct: 2   KNIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPTD+H EE ISAAEVI+T LH+GGKF+  SY++SGGLHGVG+S
Sbjct: 62  TIHSDNSVSVKDDGRGIPTDIHPEENISAAEVILTVLHSGGKFDNASYQISGGLHGVGIS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I +    Y+  + +G  +NPL + G+      T + F PS   F +  
Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENPLSIIGTTDTTG-TYIRFWPSYKTFTNNI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y+ L  RLRELSFLNS++ I L  + +    +    YKGGI+AF+ +L+  K P+  
Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYL--EDNRTSIKNCYHYKGGIKAFIKFLNAKKTPIHT 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                + ++D I +++AM+WN+ + EN+LCFTNNIPQKDGGTHL+G RS +TR +  ++E
Sbjct: 239 HIFYFRSTKDQIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMTRTLNLHIE 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           +   +KK+K ++IG+D REG T+++SIK+PDP+FSSQTK+KLVSSE RSV+ES +N+ L 
Sbjct: 299 REGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIESLINENLI 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P ++K I++K+++A+ VR+AARRAR++ ++K +LD+ +LPGKL+DC E DPK S
Sbjct: 359 EYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDCQENDPKFS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+++FDKM+ SQE+ +LITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ ++I+KLRYH IIIMTDADVDGAHIRTLLLTFF+RQ+P LI  G++YI +PPLY + 
Sbjct: 479 GKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIAQPPLYKLK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +G+  +Y+K++E +  Y I  +L + +    D+  +  K      I       ++I    
Sbjct: 539 KGRKEKYIKNDEEMNTYQIKNALKDLVLKSEDNLIINQKLKKFKKIMSEYHYIQIIMKQS 598

Query: 606 PNHDKTFI-EQAVISGVFNCESDQEINVSLASKLANRLNFIAE-------KSEKSWHGSI 657
            ++    +  + +     +   D EI       LA  LN           + +++   +I
Sbjct: 599 KHYFPKLVFNELIYHNHLHNLKDIEIVKEWIYTLAENLNKKDNSNNHYSIEIKENLDKNI 658

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
               I + R A     ++  +   + S             ++ +   + +  +G   KI 
Sbjct: 659 FEPTIKISRYAHY--TKYDFKEEFLKSKEYLLITNLGESFKKYFSDKVLIEKSGSTYKID 716

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
              +    +    ++G+ +QRYKGLGEMN  QLW TT+NP+TR++L+V I DA  A++LF
Sbjct: 717 SIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIKDAVSANNLF 776

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMG+ VEPRR+FI+ N+L +  +D+
Sbjct: 777 NTLMGEAVEPRRQFIENNALKAENIDV 803


>gi|219681955|ref|YP_002468339.1| DNA gyrase subunit B [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219621688|gb|ACL29844.1| DNA gyrase subunit B [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
          Length = 803

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/807 (46%), Positives = 542/807 (67%), Gaps = 15/807 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + YD+ +I+IL+GLDAV+KRP MYIGDTD  SGLHHM++E++DN+IDE+L GY   I V
Sbjct: 2   KNIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPTD+H EE ISAAEVIMT LH+GGKF+  SY++SGGLHGVG+S
Sbjct: 62  TIHSDNSVSVKDDGRGIPTDIHPEENISAAEVIMTVLHSGGKFDNASYQISGGLHGVGIS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L+L I +    Y+  + +G  +N L + G+      T + F PS   F +  
Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENSLSIIGTTDTTG-TYIRFWPSYKTFTNNI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y+ L  RLRELSFLNS++ I L  + +    +    YKGGI+AF+ +L+  K P+  
Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYL--EDNRTSIKNCYHYKGGIKAFIKFLNAKKTPIHT 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                + ++D I +++AM+WN+ + EN+LCFTNNIPQKDGGTHL+G RS +TR +  ++E
Sbjct: 239 HIFYFRSTKDQIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMTRTLNLHIE 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           +   +KK+K ++IG+D REG T+++SIK+PDP+FSSQTK+KLVSSE RSV+ES +N+ L 
Sbjct: 299 REGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIESLINENLI 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P ++K I++K+++A+ VR+AARRAR++ ++K +LD+ +LPGKL+DC E DPK S
Sbjct: 359 EYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDCQENDPKFS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+++FDKM+ SQE+ +LITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ ++I+KLRYH IIIMTDADVDGAHIRTLLLTFF+RQ+P LI  G++YI +PPLY + 
Sbjct: 479 GKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIAQPPLYKLK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +G+  +Y+K++E +  Y I  +L + +    D+  +  K      I       ++I    
Sbjct: 539 KGRKEKYIKNDEEMNTYQIKNALKDLVLKSEDNLIINQKLKKFKKIMSEYHYIQIIMKQS 598

Query: 606 PNHDKTFI-EQAVISGVFNCESDQEINVSLASKLANRLNFIAE-------KSEKSWHGSI 657
            ++    +  + +     +   D EI       LA  LN           + +K+   +I
Sbjct: 599 KHYFPKLVFNELIYHNHLHNLKDIEIVKEWIYTLAENLNKKDNSNNHYSIEIKKNLDKNI 658

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
               I + R A     ++  +   + S             ++ +   + +  +G   KI 
Sbjct: 659 FEPTIKISRYAHY--TKYDFKEEFLKSKEYLLITNLGESFKKYFSDKVLIEKSGSTYKID 716

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
              +    +    ++G+ +QRYKGLGEMN  QLW TT+NP+TR++L+V I DA  A++LF
Sbjct: 717 SIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIKDAVSANNLF 776

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
           + LMG+ VEPRR+FI+ N+L +  +D+
Sbjct: 777 NTLMGEAVEPRRQFIENNALKAENIDV 803


>gi|78355050|ref|YP_386499.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217455|gb|ABB36804.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 797

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/805 (44%), Positives = 501/805 (62%), Gaps = 10/805 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  Q  SYDA +I +L+GL AV+ RP+MYIG TD   GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MTNETQKQSYDAANITVLEGLSAVRMRPAMYIGSTDS-RGLHHLVYEVVDNSIDEAMAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D +TV L++D S TV DNGRGIP D+H +EG  A EV+MT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDKVTVKLHLDNSVTVIDNGRGIPVDIHPKEGRPAVEVVMTVLHAGGKFDNDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS +L++ ++R+G  Y   F  G+    L   G   +  GT + F P  +
Sbjct: 120 HGVGVSCVNALSEYLEVTVRRDGYKYHHRFERGVPVKELERVGET-DLRGTTIRFRPDEE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F++D L+ R  EL++LN  +++  ID+R+ +       Y+GGI  FV  L+  +
Sbjct: 179 IFETNQFSFDILKKRFEELAYLNPGLEVEFIDERTGDTAS--FHYEGGIREFVKNLNSGE 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +    I   G  DN+ +D A+++N GY EN+L F NNI  K+GGTHL+G ++ALTR I
Sbjct: 237 GGVHS-IIFASGESDNVMVDFALQYNAGYKENMLTFANNIRTKEGGTHLAGFKTALTRAI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++ S   KK K  + GDD REG T V+S+K+P+P+F  QTK KL +SEV  +V   V
Sbjct: 296 NNYIQNSDLPKKLKVKLSGDDVREGLTGVVSVKLPNPQFEGQTKTKLGNSEVAGIVSGLV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +  E+P +AK+I++K +DA+  RDAAR+A+DL RRKG L   +LPGKLADC  +
Sbjct: 356 YENLNTYFGENPKDAKLIIEKAVDAARARDAARKAKDLVRRKGALSDNALPGKLADCQSK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SELF+VEGDSAGGSAKQGR+   QAILPLRGKILNVE+ RFDKML+++E+  LITA
Sbjct: 416 DPSESELFIVEGDSAGGSAKQGRNPSTQAILPLRGKILNVEKTRFDKMLANKEVKALITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G GIG++  D  KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQ P LI  G LYI +PP
Sbjct: 476 MGAGIGEEDIDYGKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQYPELIDRGHLYIAQPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           L+ +   K  +++KDE  L  YL+ + +++++ +   +     +  + + +     I+  
Sbjct: 536 LFRVYNSKFERFIKDETELNTYLLER-IAKDVVIEAHNGMEFRETQILDLLKAIRFINAR 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
           I D         +  A +                 +     L       + S   S    
Sbjct: 595 IADVENVGIGRNLFLAFLEYGEKLSPQFFEAPEF-NGFGTYLQEKGYSVQTSVDESGLER 653

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKY-KRIFSNRIEENYLTILSLICNGDKIKITGP 719
            + ++        +  +      S   K      ++           +   G++ ++   
Sbjct: 654 RVYLE-FEDSNGHKTRIGNEFFNSKMYKQPYDSMADMRRICGGFSFVVDRKGERTEVENI 712

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             LLD +    RKGI++QRYKGLGEM+A QLW TT+NP+ R LL+V++ DA +A+++F +
Sbjct: 713 FVLLDHVLQEARKGINIQRYKGLGEMDAEQLWVTTMNPENRVLLQVQVDDAEEANEIFEQ 772

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGD VEPRREFI  N+L    LDI
Sbjct: 773 LMGDRVEPRREFIVRNALSVQELDI 797


>gi|255003158|ref|ZP_05278122.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Puerto Rico]
 gi|255004287|ref|ZP_05279088.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Virginia]
          Length = 793

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/802 (50%), Positives = 551/802 (68%), Gaps = 20/802 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY+A +I +L+GLDAVKKRP MYIGDTD  SGLHHM YEV+DNAIDE+L G+ + I + +
Sbjct: 3   SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DGS  ++DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVV
Sbjct: 63  AGDGSIAITDNGRGIPIDIHEEEGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVV 122

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSSWL+L I +EG  Y M F NG   +PL + G  G+  GT V+F+PSSD+FS  DF+
Sbjct: 123 NALSSWLELTIWKEGREYFMRFENGAAVSPLKMVGECGSKKGTRVSFMPSSDVFSHTDFS 182

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY-----KGGIEAFVSYLDRHKKPL 243
           Y TL++R+RELS LNS+V I+L D R     E            G  AFV YLDR+K P+
Sbjct: 183 YSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKTPV 242

Query: 244 MQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +    +   S   IS++L+M WND Y+EN+LCFTNNI QKDGGTHL+G RSALTR + +
Sbjct: 243 TKVISLKGMMSGYEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTRCVNN 302

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y       KK K ++IG+D REG T VLSIKMPDPRFSSQTK+KLVSSE R VVES V +
Sbjct: 303 YATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIVFE 362

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS+  E +P  A  +V++V+ ++  R+AAR+AR++ + KG LD A+LPGKLADC E+ P
Sbjct: 363 KLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQEKSP 422

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           + SELF+VEG+SAGGSAKQGR R  QA+L LRGKILNVER   D+MLSS EI +LITA+G
Sbjct: 423 ELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLITAIG 482

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           + IG  SFD++K+RYHKIIIMTDADVDG+HIRTLLLTFFFR M  +I  G+LYI +PPLY
Sbjct: 483 SSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQPPLY 542

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +TR +   Y+K++E+L DY++    +    L        S  +L++ +   ++I  + K
Sbjct: 543 KLTRHRKDTYIKNDEALSDYIVG---NATRSLVLSGGAEHSGAELQSILRKCMRIANVTK 599

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD- 661
            +     +   E  ++         ++  +   + +A  LN +   SE  W+  ++    
Sbjct: 600 AYARMIPQEVFESLIVQ-------YKKCGLGSPADMAAHLNRVF--SEYQWNVEMSEDGM 650

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
           I + R+++G+ +++ +    + S   +      + IE+ +    +L     ++K+  PC+
Sbjct: 651 ITILRLSQGMVDKYAIGADFVHSRDVQNIVSTLDGIEDIFGADTTLSAKDYQMKVRSPCT 710

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L  ++   GRK +++QR+KGLGEMNA QLW+TTLNP+TR+LL+VKI+D + AD +FS LM
Sbjct: 711 LASSVVEFGRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDYAAADSIFSVLM 770

Query: 782 GDEVEPRREFIQENSLPS-ALD 802
           GD VEPRR+FI +N+L    +D
Sbjct: 771 GDLVEPRRDFINDNALRVENID 792


>gi|218781946|ref|YP_002433264.1| DNA gyrase, B subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218763330|gb|ACL05796.1| DNA gyrase, B subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 812

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/815 (44%), Positives = 522/815 (64%), Gaps = 22/815 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A++I++L+GL+AV+KRPSMYIG+   E GLHH++YEV+DN+IDE++ GY D I V
Sbjct: 2   TQEYTAENIKVLQGLEAVRKRPSMYIGNVSTE-GLHHLVYEVVDNSIDEAMAGYCDHIQV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S TV DNGRGIPT +HK EGI A EV+M +LHAGGKF+  +YKVSGGLHGVGVS
Sbjct: 61  TIHEDNSVTVEDNGRGIPTGIHKTEGIPAVEVVMCKLHAGGKFDNATYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS +L++ I + G IY  ++  G   + L V G      GT++ F P + I + +D
Sbjct: 121 VVNALSDFLEVEIYQGGEIYYQTYSKGGKTSELEVIGKTK-KRGTKIHFAPDTTIMTDED 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y  L  RLREL+FLN+ ++I+L D+RS E +E    YKGGI +FV YL+R +  L   
Sbjct: 180 YQYAILSKRLRELAFLNAGIKITLEDERSDEEKEE-FLYKGGIISFVEYLNRSRTTLH-K 237

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI + G++ NI I++A+++   + E++L F NNI   +GG+HL G ++ALTR I  Y   
Sbjct: 238 PIFMAGAKSNIEIEVALQYTTAFSESILTFANNINTAEGGSHLIGFKAALTRTINQYASS 297

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              +K  +  + GDD REG T+++SI++PDP+F  QTK KL +SEV+ +VES VN+ L A
Sbjct: 298 DNVAKNAQTKISGDDVREGLTAIVSIRIPDPQFEGQTKTKLGNSEVKGLVESLVNEKLGA 357

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P  AK +V + ++A+  R+AARRARDL R+KG L+ ++LPGKLA+C   +PK  E
Sbjct: 358 FFEENPSIAKKMVMRAVEAARAREAARRARDLARKKGALNDSTLPGKLAECQISEPKLRE 417

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDK+L S EI  +ITALGTG+G
Sbjct: 418 LFLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKILQSDEIKNMITALGTGVG 477

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            + +DI K+RYHK+IIMTDADVDG+HIRTLLLTFF+RQ+P ++  GFLYI +PPLY + +
Sbjct: 478 AEEYDIKKIRYHKVIIMTDADVDGSHIRTLLLTFFYRQLPEILDEGFLYIAQPPLYRVGK 537

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK+ +Y+KD++ + +YL+ +               ++++ +  F+ D  +    ++    
Sbjct: 538 GKAAKYLKDDQEMSEYLLRRICESRSIRRTTEDKPMAEHQMYLFLCDLTEYVTTLQRLDR 597

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
                 + + VI      ++       +     N +    E SE  +       +++V  
Sbjct: 598 RGIPADMAEEVIKAGIISKTGLRDEARMIELRNNLIAKGYEVSELDYSDERRVYELMVTP 657

Query: 667 I-------------ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-- 711
           +                  E   +    I+S   +   + S R  +       +   G  
Sbjct: 658 LPKAQGQGDTSEVSIYDKLEPIKIGRGFIYSSDFQKCAVLSKRALDANGDAFVVWSRGKD 717

Query: 712 --DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
               +++     LL  +    +KGIS+QRYKGLGEMN  QLWETT++P+ R L++VK+ D
Sbjct: 718 EEKTVELPNKEELLHHLMEESKKGISLQRYKGLGEMNPDQLWETTMDPEKRRLVKVKVED 777

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           A + D++F  LMGDEVEPRR+FIQ N+L    LDI
Sbjct: 778 AIETDEMFRLLMGDEVEPRRDFIQSNALEVTQLDI 812


>gi|56416812|ref|YP_153886.1| DNA gyrase subunit B [Anaplasma marginale str. St. Maries]
 gi|254995014|ref|ZP_05277204.1| DNA gyrase subunit B [Anaplasma marginale str. Mississippi]
 gi|56388044|gb|AAV86631.1| DNA gyrase subunit B [Anaplasma marginale str. St. Maries]
          Length = 793

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/802 (50%), Positives = 550/802 (68%), Gaps = 20/802 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY+A +I +L+GLDAVKKRP MYIGDTD  SGLHHM YEV+DNAIDE+L G+ + I + +
Sbjct: 3   SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DGS  ++DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVV
Sbjct: 63  AGDGSIAITDNGRGIPIDIHEEEGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVV 122

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSSWL+L I +EG  Y M F NG   +PL + G  G+  GT V+F+PSS +FS  DF+
Sbjct: 123 NALSSWLELTIWKEGREYFMRFENGAAVSPLKMVGECGSKKGTRVSFMPSSAVFSHTDFS 182

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY-----KGGIEAFVSYLDRHKKPL 243
           Y TL++R+RELS LNS+V I+L D R     E            G  AFV YLDR+K P+
Sbjct: 183 YSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKTPV 242

Query: 244 MQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +    +   S   IS++L+M WND Y+EN+LCFTNNI QKDGGTHL+G RSALTR + +
Sbjct: 243 TKVISLKGMMSGYEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTRCVNN 302

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y       KK K ++IG+D REG T VLSIKMPDPRFSSQTK+KLVSSE R VVES V +
Sbjct: 303 YATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIVFE 362

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS+  E +P  A  +V++V+ ++  R+AAR+AR++ + KG LD A+LPGKLADC E+ P
Sbjct: 363 KLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQEKSP 422

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           + SELF+VEG+SAGGSAKQGR R  QA+L LRGKILNVER   D+MLSS EI +LITA+G
Sbjct: 423 ELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLITAIG 482

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           + IG  SFD++K+RYHKIIIMTDADVDG+HIRTLLLTFFFR M  +I  G+LYI +PPLY
Sbjct: 483 SSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQPPLY 542

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +TR +   Y+K++E+L DY++    +    L        S  +L++ +   ++I  + K
Sbjct: 543 KLTRHRKDTYIKNDEALSDYIVG---NATRSLVLSGGAEHSGAELQSILRKCMRIANVTK 599

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD- 661
            +     +   E  ++         ++  +   + +A  LN +   SE  W+  ++    
Sbjct: 600 AYARMIPQEVFESLIVQ-------YKKCGLGSPADMAAHLNRVF--SEYQWNVEMSEDGM 650

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
           I + R+++G+ +++ +    + S   +      + IE+ +    +L     ++K+  PC+
Sbjct: 651 ITILRLSQGMVDKYAIGADFVHSRDVQNIVSTLDGIEDIFGADTTLSAKDYQMKVRSPCT 710

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L  ++   GRK +++QR+KGLGEMNA QLW+TTLNP+TR+LL+VKI+D + AD +FS LM
Sbjct: 711 LASSVVEFGRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDYAAADSIFSVLM 770

Query: 782 GDEVEPRREFIQENSLPS-ALD 802
           GD VEPRR+FI +N+L    +D
Sbjct: 771 GDLVEPRRDFINDNALRVENID 792


>gi|239904642|ref|YP_002951380.1| DNA gyrase subunit B [Desulfovibrio magneticus RS-1]
 gi|239794505|dbj|BAH73494.1| DNA gyrase subunit B [Desulfovibrio magneticus RS-1]
          Length = 804

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/813 (43%), Positives = 497/813 (61%), Gaps = 19/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +    +YDA SI +L+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDES+ GY
Sbjct: 1   MSQDKTPQAYDASSITVLEGLSAVRKRPAMYIGSTD-IRGLHHLVYEVVDNSIDESMAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I +T+++D S TVSDNGRGIP D+H +EG  A EV+MT LHAGGKF+  +YKVSGGL
Sbjct: 60  CDRIGITIHLDNSVTVSDNGRGIPVDIHPKEGRPAVEVVMTVLHAGGKFDNDAYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L++ ++R G  +   +  G     L V G A  +TGT + FLP  +
Sbjct: 120 HGVGVSVVNALSEYLEVTVRRGGKKHHQRYERGAPVTALTVIGEAE-NTGTTIRFLPDEE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    FN++TL  R  EL++LN  +++   D+R+ E         GG+  FV+ L+  +
Sbjct: 179 IFETSQFNHETLAKRFEELAYLNRKLELDFRDERTNERVTYRF--DGGLNRFVTDLNAGE 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +    I  QG  + I +D A+++N  Y E VL F NNI  ++GGTHL G ++ALTR I
Sbjct: 237 QVIH-EIIEGQGEIEGIMVDFALQYNANYKEEVLTFANNIRTREGGTHLQGFKTALTRAI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+EK+   KK K+ + GDD REG T+V+S+K+P P+F  QTK KL +SEV  +V   V
Sbjct: 296 NTYIEKADIPKKFKQKLTGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGLVAKIV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + ++   EE+P +AK IV+K +DA+  R+AAR+A++L RRKG L   SLPGKLADC  +
Sbjct: 356 FEAVNVHFEENPKDAKSIVEKAVDAARAREAARKAKELVRRKGALSDHSLPGKLADCQSK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
            P++SELF+VEGDSAGGSAKQGR    QAILPLRGKILNVER R DKML ++EI  LITA
Sbjct: 416 KPEESELFIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRTDKMLGNKEIRNLITA 475

Query: 481 LGTGIGQDSFDIN--------KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           +G        +          +LRYHKI+IMTDADVDGAHIRTLLLTFF+R+   LI NG
Sbjct: 476 IGPTPAMGDEESEEKEAENLARLRYHKIVIMTDADVDGAHIRTLLLTFFYRRYEKLILNG 535

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           ++YI +PPLY + +G   +++KD+E L  +L+ +    E       +   S   L N I+
Sbjct: 536 YVYIAQPPLYRVFKGDFERFIKDDEELSLFLMGRI--GEDVSVASGETTFSGESLTNLIE 593

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               ++  +++         +  +++S      +     V L   LA  L+ I   +  +
Sbjct: 594 RIRFLEARVREAGSYGLPEELLVSLLSYP-RLAASDFAGVDLPDGLAEHLSAIG-YTVAT 651

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN-YLTILSLICNG 711
               ++    L        Q +  +      S   +        +         ++    
Sbjct: 652 EVEELDEERRLYAVFVSPNQARHRIAVEFFSSRIYRRAHETYAELTTLCPTQPFAITRKE 711

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           +  ++ G   L   +     KGI++QRYKGLGEMN  QLWETT+NP+ RS L+V+I D  
Sbjct: 712 ETREVGGFFELCRALMDDALKGINIQRYKGLGEMNPEQLWETTMNPEKRSFLQVRIEDMD 771

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +AD +FS+LMG++VE RR FI+ N+L    LDI
Sbjct: 772 EADSIFSQLMGEKVENRRNFIERNALSVRELDI 804


>gi|116619148|ref|YP_821304.1| DNA gyrase subunit B [Candidatus Solibacter usitatus Ellin6076]
 gi|116222310|gb|ABJ81019.1| DNA gyrase subunit B [Candidatus Solibacter usitatus Ellin6076]
          Length = 815

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/805 (45%), Positives = 506/805 (62%), Gaps = 15/805 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YD+ SI++L+GL+AV+ RP+MYIG T GE GLHH++YEV+DN++DE+L GYA  I VT++
Sbjct: 15  YDSSSIKVLEGLEAVRLRPAMYIGST-GEMGLHHLVYEVVDNSVDEALAGYATHIEVTIH 73

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D S TV D+GRGIP  +H+EEG+SAA+V+MT+LHAGGKF+  SYKVSGGLHGVGVS VN
Sbjct: 74  DDNSVTVEDDGRGIPVGIHEEEGVSAAQVVMTKLHAGGKFDSNSYKVSGGLHGVGVSCVN 133

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L+L I REG  +   +  G     LV  G AG  TGT VTF P S I  V  FNY
Sbjct: 134 ALSEKLELEIWREGYTWTQEYSCGKPKADLVRAGKAGKRTGTRVTFKPDSTIMEVAVFNY 193

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           DTL  RLREL+FLN  ++I+L D+R    +     Y+GGI  F+ +L+R K  L + PI 
Sbjct: 194 DTLAQRLRELAFLNKGLKITLTDERVDPEKVTPFEYQGGISEFIKHLNRGKSVLHEKPIH 253

Query: 250 IQGSRDN-----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +  R+      I++++A+++ND Y ENV  F NNI   DGGTHLSG RSALTR I ++ 
Sbjct: 254 FEAEREMPEKGTITMEVALQYNDAYSENVFSFANNINTVDGGTHLSGFRSALTRTINAFG 313

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +K+   K  K ++ GDD REG T+V+S+K+P P+F  QTK KL +S++   +  FVND L
Sbjct: 314 QKNGLFKDVKENLSGDDVREGLTAVVSVKVPQPQFEGQTKGKL-NSDIAGYMTQFVNDKL 372

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S + +++    + IV K ++AS  R+AAR+ARDLTRRKG LD   LPGKLADC E+DPK 
Sbjct: 373 SEYFDKNSAVGRKIVGKAIEASRAREAARKARDLTRRKGALDSGGLPGKLADCQEKDPKL 432

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEG+SAGG+AKQGR R  QAILPL+GKILNVE+AR+DKML  +EI  +ITALGTG
Sbjct: 433 CELFLVEGESAGGTAKQGRERRFQAILPLKGKILNVEKARYDKMLGHEEIRCMITALGTG 492

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D FD+ KLRY KIIIMTDADVDG+HIRTLLLTFFFR M  LI  G +YI +PPLY I
Sbjct: 493 IGKDDFDVAKLRYDKIIIMTDADVDGSHIRTLLLTFFFRHMNELITRGKVYIAQPPLYRI 552

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK-----GVISKNDLRNFIDDALKIDK 599
            +GKS +Y+KDE+     ++ ++          +        +   +LR F+ +  +  +
Sbjct: 553 KKGKSEKYIKDEKEFTKEIMRRATENLTVEIHSNGDGKPKSSLEGQELRTFLLNLDEFQQ 612

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
           +          +     + +   + +   +    + + L      +  K           
Sbjct: 613 IFHKVERRLRDSRAVDVLTNVDLHVD--NKAEFQVEANLKPVFEAMKAKGLNPQMKKDEE 670

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
                         +  +          +  R  +  I +       ++ N  +      
Sbjct: 671 HSAWAVVFHDSTGAERSVGLQLAAQPEYRRFRALARTIAKFNEPPFVVVKNEHRDAQPDW 730

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             LL+ + + G+K  S+QRYKGLGEMNA QL +TT+NP+ R+LL V++ DA Q +++FS 
Sbjct: 731 VELLEYVKNEGKKDASVQRYKGLGEMNAEQLADTTMNPEKRTLLEVRLEDAVQCEEIFST 790

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMG++VE RR+FI+EN+L    LD+
Sbjct: 791 LMGEDVESRRKFIEENALDVKNLDV 815


>gi|218887173|ref|YP_002436494.1| DNA gyrase subunit beta [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758127|gb|ACL09026.1| DNA gyrase, B subunit [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 798

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/810 (44%), Positives = 490/810 (60%), Gaps = 19/810 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+      +Y ADSI IL+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MTTPTG-QTYTADSITILEGLAAVRKRPAMYIGSTDA-RGLHHLVYEVVDNSIDEAMAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V L++D S TVSDNGRGIP DLH +EG  A EV+MT+LHAGGKF+  +YKVSGGL
Sbjct: 59  CSRIVVKLHLDNSVTVSDNGRGIPVDLHPKEGKPAVEVVMTKLHAGGKFDNDAYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS WL++ ++R+G  + M F  G +  PL   G + N  GT V F P  +
Sbjct: 119 HGVGVSCVNALSEWLEVTVRRDGKRHRMRFARGAVQGPLEFLGESANH-GTTVHFKPDEE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++Y+TL+ R  ELS+LN  ++I   D+RS E         GGI  FV  L+  +
Sbjct: 178 IFETVQYSYETLRKRFEELSYLNKGLEIEFTDERSAETH--VFRADGGIRQFVKDLNSGE 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +       +G  D +++D A+++N GY ENVL F NNI  K+GGTHL+G ++ALTR I
Sbjct: 236 SGIHPIID-GEGVTDGVTVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFKTALTRAI 294

Query: 301 TSYVEKSFGS--KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             Y++       K     + GDD REG TSV+S+K+P P+F  QTK KL +SE+  +V  
Sbjct: 295 NGYIKGQPDLVKKMKGTVLSGDDVREGLTSVVSVKLPQPQFEGQTKTKLGNSEIAGLVAG 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D L+    E+P +A++I+ K +DA+  RDAARRA++L RRKG L   SLPGKLADC 
Sbjct: 355 IVYDKLNVHFGENPKDARLIIDKAVDAARARDAARRAKELVRRKGALSDNSLPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SELF+VEGDSAGGSAKQGR    QAILPLRGKILN ER RFDKML+++E+  LI
Sbjct: 415 SKDPAESELFIVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKALI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+G GIG+D  D +KLRYHK++IMTDADVDGAHIRTLLLTFFFRQ   LI  G LYI +
Sbjct: 475 TAMGAGIGEDDTDYDKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQYQELIDRGHLYIAQ 534

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY +   +  +++KD+  L  +L+ + +S +I +  +S    +  D+ + +     + 
Sbjct: 535 PPLYRVHSSRFEKFIKDDPELNAFLLER-ISNDITIRTESGCAFTGPDIVSLMKAIELVS 593

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS---LASKLANRLNFIAEKSEKSWHG 655
             ++D         +  A I      E           L   L +R   ++ + E     
Sbjct: 594 AKVRDVENIGIARELFLAFIEYQTRIEPQWFTEEDPNGLRQWLGDRGYTVSAEHE----- 648

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKI 714
             +               +  +      S   +      ++          ++   G+  
Sbjct: 649 DTDEDSRTFVVFEDTNGHRTRVGAEFFHSKMYRQAWDALADIRTRCGSLRCTVDRKGETS 708

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                  L   +    RKGI++QRYKGLGEMN  QLW TT+NP+ R+LLRV + DA +A 
Sbjct: 709 DAEDIFDLFRLVLDEARKGINIQRYKGLGEMNPEQLWVTTMNPENRTLLRVTVDDAEEAS 768

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + F +LMGD VEPRREFI+ N+L    LDI
Sbjct: 769 EAFEQLMGDRVEPRREFIERNALSVQDLDI 798


>gi|222475176|ref|YP_002563592.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Florida]
 gi|222419313|gb|ACM49336.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Florida]
          Length = 793

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/802 (50%), Positives = 551/802 (68%), Gaps = 20/802 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY+A +I +L+GLDAVKKRP MYIGDTD  SGLHHM YEV+DNAIDE+L G+ + I + +
Sbjct: 3   SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DGS  ++DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVV
Sbjct: 63  AGDGSIAITDNGRGIPIDIHEEEGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVV 122

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSSWL+L I +EG  Y M F NG   +PL + G  G+  GT V+F+PSSD+FS  DF+
Sbjct: 123 NALSSWLELTIWKEGREYFMRFENGAAISPLKMVGECGSKKGTRVSFMPSSDVFSHTDFS 182

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY-----KGGIEAFVSYLDRHKKPL 243
           Y TL++R+RELS LNS+V I+L D R     E            G  AFV YLDR+K P+
Sbjct: 183 YSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKTPV 242

Query: 244 MQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +    +   S   IS++L+M WND Y+EN+LCFTNNI QKDGGTHL+G RSALTR + +
Sbjct: 243 TKVISLKGMMSGYEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTRCVNN 302

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y       KK K ++IG+D REG T VLSIKMPDPRFSSQTK+KLVSSE R VVES V +
Sbjct: 303 YATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIVFE 362

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS+  E +P  A  +V++V+ ++  R+AAR+AR++ + KG LD A+LPGKLADC E+ P
Sbjct: 363 KLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQEKSP 422

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           + SELF+VEG+SAGGSAKQGR R  QA+L LRGKILNVER   D+MLSS EI +LITA+G
Sbjct: 423 ELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLITAIG 482

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           + IG  SFD++K+RYHKIIIMTDADVDG+HIRTLLLTFFFR M  +I  G+LYI +PPLY
Sbjct: 483 SSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQPPLY 542

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +TR +   Y+K++E+L DY++    +    L        S  +L++ +   ++I  + K
Sbjct: 543 KLTRHRKDTYIKNDEALSDYIVG---NATRSLVLSGGAEHSGAELQSILRKCMRIANVTK 599

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD- 661
            +     +   E  ++         ++  +   + +A  LN +   SE  W+  ++    
Sbjct: 600 AYARMIPQEVFESLIVQ-------YKKCGLGSPADMAAHLNRVF--SEYQWNVEMSEDGM 650

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
           I + R+++G+ +++ +    + S   +      + IE+ +    +L     ++K+  PC+
Sbjct: 651 ITILRLSQGMVDKYAIGADFVHSRDVQNIVSTLDGIEDIFGADTTLSAKDYQMKVRSPCT 710

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L  ++   GRK +++QR+KGLGEMNA QLW+TTLNP+TR+LL+VKI+D + AD +FS LM
Sbjct: 711 LASSVVEFGRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDYAAADSIFSVLM 770

Query: 782 GDEVEPRREFIQENSLPS-ALD 802
           GD VEPRR+FI +N+L    +D
Sbjct: 771 GDLVEPRRDFINDNALRVENID 792


>gi|269958766|ref|YP_003328553.1| DNA gyrase subunit B [Anaplasma centrale str. Israel]
 gi|269848595|gb|ACZ49239.1| DNA gyrase subunit B [Anaplasma centrale str. Israel]
          Length = 793

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/802 (50%), Positives = 550/802 (68%), Gaps = 20/802 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY+A +I +L+GLDAVKKRP MYIGDTD  SGLHHM YEV+DNAIDE+L G+ + I + +
Sbjct: 3   SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DGS  ++DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVV
Sbjct: 63  AGDGSIAITDNGRGIPIDIHEEEGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVV 122

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSSWL+L I +EG  Y M F NG   +PL + G  G+  GT V+F+PSS +FS  DF+
Sbjct: 123 NALSSWLELTIWKEGREYFMRFENGAAVSPLKMVGECGSKKGTRVSFMPSSGVFSHTDFS 182

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY-----KGGIEAFVSYLDRHKKPL 243
           Y TL++R+RELS LNS+V I+L D R     E            G  AFV YLDR+K P+
Sbjct: 183 YSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKTPV 242

Query: 244 MQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +    +   S   IS++L+M WND Y+EN+LCFTNNI QKDGGTHL+G RSALTR + +
Sbjct: 243 TKVISLKGMMSGYEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTRCVNN 302

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y       KK K ++IG+D REG T VLSIKMPDPRFSSQTK+KLVSSE R VVES V +
Sbjct: 303 YATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIVFE 362

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS+  E +P  A  +V++V+ ++  R+AAR+AR++ + KG LD A+LPGKLADC E+ P
Sbjct: 363 KLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQEKSP 422

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           + SELF+VEG+SAGGSAKQGR R  QA+L LRGKILNVER   D+MLSS EI +LITA+G
Sbjct: 423 ELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLITAIG 482

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           + IG  SFD++K+RYHKIIIMTDADVDG+HIRTLLLTFFFR M  +I  G+LYI +PPLY
Sbjct: 483 SSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQPPLY 542

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +TR +   Y+K++E+L DY++    +    L        S  +L++ +   ++I  + K
Sbjct: 543 KLTRHRKDTYIKNDEALSDYIVG---NATRSLVLSGGAEHSGAELQSILRKCMRIANVTK 599

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD- 661
            +     +   E  ++         ++  +   + +A  LN +   SE  W+  ++    
Sbjct: 600 AYARMIPQEVFESLIVQ-------YKKCGLGSPADMAAHLNRVF--SEYQWNVEMSEDGM 650

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
           + + R+++G+ +++ +    + S   +      + IE+ +    +L     ++K+  PC+
Sbjct: 651 LTILRLSQGMVDKYAIGADFVHSRDVQNIVSTLDGIEDIFGADTTLSAKDYQMKVRSPCT 710

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L  ++   GRK +++QR+KGLGEMNA QLW+TTLNP+TR+LL+VKI+D + AD +FS LM
Sbjct: 711 LASSVVEFGRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDYAAADSIFSVLM 770

Query: 782 GDEVEPRREFIQENSLPS-ALD 802
           GD VEPRR+FI +N+L    +D
Sbjct: 771 GDLVEPRRDFINDNALRVENID 792


>gi|301165375|emb|CBW24946.1| DNA gyrase subunit B [Bacteriovorax marinus SJ]
          Length = 817

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/810 (44%), Positives = 514/810 (63%), Gaps = 19/810 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             YDAD I++L+GL+AV+KRP MYIGDT    GLHH +YE++DNA+DE+L GY   I + 
Sbjct: 13  EKYDADQIKVLEGLEAVRKRPGMYIGDT-AVRGLHHCVYEIVDNAVDEALAGYCTEIKII 71

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGVGV 125
           +++D S TV DNGRGIPTD+H  EG SAAE++ T+LHAGGKF  +  +YKVSGGLHGVG 
Sbjct: 72  IHVDNSVTVVDNGRGIPTDMHPTEGCSAAELVYTKLHAGGKFNEDGGAYKVSGGLHGVGA 131

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFS 183
           +VVNALS W+K+ IK+ G ++ + F  G    PL V G       TGT VTF P ++IF 
Sbjct: 132 AVVNALSKWVKMEIKKHGKLHAVKFERGEAVAPLAVIGDLEDPKITGTAVTFKPDNEIFE 191

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V +FNYDTL +R RE++FLN  + ISL D+RS +       Y+GGI  FV+YL+R K  +
Sbjct: 192 VHEFNYDTLANRFREMAFLNKGLNISLKDERSDKK--DVFCYEGGIAEFVTYLNRAKTAV 249

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            +  I    +R++  +++AM+W D Y E +  + N I    GGTH+SG ++A+TR + +Y
Sbjct: 250 HKKVIAFSQAREDYEVEVAMQWTDSYSEVLSGYANAICTPGGGTHISGFKTAITRVLNAY 309

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            + +   K  K ++ GDD REG T+++SIK+P+ +F  QTK+KL +SEV  +V S V + 
Sbjct: 310 AKDNNLLKGLKSNLTGDDMREGLTAIISIKLPELQFEGQTKDKLGNSEVEGIVNSLVGEQ 369

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +LEE+P  AK I+KK +DA+  R+AAR+AR+LTRRK  L ++ LPGK+ADC E+DP 
Sbjct: 370 LKQYLEENPSLAKTIIKKSVDAAAAREAARKARELTRRKSALVVSGLPGKMADCQEKDPA 429

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           +SE+++VEGDSAGGSAKQGR R+ QA+LPL+GKILNVE+AR+DKML++ EI  ++ A+GT
Sbjct: 430 RSEIYIVEGDSAGGSAKQGRDRKTQAVLPLKGKILNVEKARYDKMLANNEIKMIVQAMGT 489

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+G++ FDI KLRYHKI+IMTDADVDG+HIRTL+LT  +RQ P L+ NG++YI +PPL+ 
Sbjct: 490 GVGKEQFDIKKLRYHKIVIMTDADVDGSHIRTLILTLLYRQFPELVENGYVYIAQPPLFK 549

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
             +GK+ +Y+KDE+ LE +L   SL + +         +S ++ R  ++      + ++ 
Sbjct: 550 YKKGKAERYLKDEKELEAFLTTNSLQDTVIK--ADGKDLSTDEARVLVNKYRNYTRTVES 607

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSINNS- 660
           +  + D   + Q +       +  ++     +   KL          + K++  SI    
Sbjct: 608 YDIHFDSLLLRQIIERSHITADILKDKVALQAELDKLTAYFKEQEVNTLKTYTFSITEDL 667

Query: 661 -----DILVKRIARGVQEQFVLEGSSIFSFGS-KYKRIFSNRIEENYLTILSLICNGDKI 714
                 I +     G  ++F L    + S         +                     
Sbjct: 668 AHQSNQININVRTTGRTKKFKLNTYFLESPDYADLLNGYDGMKSYVNAKFSIDREKAGVK 727

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +        + I   G++G  +QRYKGLGEMN  QLWETT+NPD R+LL+V+I D  +AD
Sbjct: 728 EFDSLNEFAEHIIVDGKQGAYIQRYKGLGEMNPEQLWETTMNPDNRTLLQVRIEDTIEAD 787

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +FS LMGD VEPRR+F++EN+L    LD+
Sbjct: 788 QVFSVLMGDNVEPRRQFVEENALNVRNLDV 817


>gi|91785916|ref|YP_546868.1| DNA gyrase subunit B [Polaromonas sp. JS666]
 gi|91695141|gb|ABE41970.1| DNA gyrase subunit B [Polaromonas sp. JS666]
          Length = 874

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/840 (45%), Positives = 520/840 (61%), Gaps = 45/840 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + +Y   SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I 
Sbjct: 38  ASEAYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 97

Query: 66  VTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           VT++ D S +V+DNGRGIPT +      E   SAAE+ +T LHAGGKFNQ SYKVSGGLH
Sbjct: 98  VTIHTDNSISVTDNGRGIPTGIKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 157

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169
           GVGVS VNALS  L+L I+R+G ++ M F  G +             +P+       +  
Sbjct: 158 GVGVSCVNALSKMLRLTIRRDGKVHVMEFSRGFVQNRIIEQINGVDVSPMK-VMDHTDKR 216

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GTEV FLP ++IF   + F+Y+ L  RLRELSFLN+ V+I L D+RS +         GG
Sbjct: 217 GTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERSGKE--DDFAGAGG 274

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++ FV ++++ K  L  +     G R      NI +++AM+WN GY E VLCFTNNIPQ+
Sbjct: 275 VKGFVEFINKGKTVLHPNVFAAMGDRQSDQGTNIGVEVAMQWNSGYSEQVLCFTNNIPQR 334

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+GLR+A+TR I  Y++ S  +KK K  V GDD REG   VLS+K+P+P+FSSQT
Sbjct: 335 DGGTHLTGLRAAMTRVINKYIDDSELAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQT 394

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR  VE  V+  L  +L+E P +AKIIV K+++A+  R+AAR+ARD+TRRKG
Sbjct: 395 KDKLVSSEVRGPVEDIVSRLLHDYLQERPNDAKIIVGKIIEAARAREAARKARDMTRRKG 454

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLD   LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPLRGKILNVE+A
Sbjct: 455 VLDGMGLPGKLADCQEKDPAMCEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKA 514

Query: 464 RFDKMLSSQEIGTLITAL----------GTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           R++K+L+S EI TLITAL          G   G D F++ KLRYH+IIIMTDADVDGAHI
Sbjct: 515 RYEKLLTSNEILTLITALGTGIGKAGGIGGTPGTDDFNVAKLRYHRIIIMTDADVDGAHI 574

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           RTLLLTFF+RQMP L+  G +YI +PPLY +  GK  QY+KD  +L+ +L+  +L +   
Sbjct: 575 RTLLLTFFYRQMPELVERGHIYIAQPPLYKVKAGKEEQYLKDTAALDGFLLRIALKDASV 634

Query: 574 LF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
               D+  V++ + L          + +I       D   +         N ++  +   
Sbjct: 635 QTGADASTVLTGDTLAELARKHQLAESVIARLRGFMDAEALRAIADGVSLNLDTVADAEA 694

Query: 633 SLASKLAN--RLNFIAEKSEK--SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
           S  +       LN     ++    +    +   + + R   G  +  V+    +      
Sbjct: 695 SAVTLQVKLRELNTTGAPADVAGEFDTRTDKPILRISRRHHGNVKSSVITQDFVHGADYA 754

Query: 689 YKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
                +            ++        + K++     +  +        + QRYKGLGE
Sbjct: 755 TLADAAATFRGLISEGAKVMRGEGERQKEEKVSDFRQAMAWLIGQAENATARQRYKGLGE 814

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           MN +QLWETT++P  R LLRV+I DA +AD +F+ LMGDEVEPRREFI++N+L  + +D+
Sbjct: 815 MNPAQLWETTMDPQVRRLLRVQIDDAIEADHVFTMLMGDEVEPRREFIEQNALRAANIDV 874


>gi|121607001|ref|YP_984330.1| DNA gyrase subunit B [Polaromonas naphthalenivorans CJ2]
 gi|120595970|gb|ABM39409.1| DNA gyrase subunit B [Polaromonas naphthalenivorans CJ2]
          Length = 874

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/841 (46%), Positives = 526/841 (62%), Gaps = 47/841 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + +Y   SIQIL+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDESL G+ D I 
Sbjct: 38  ASEAYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDESLAGHCDDIL 97

Query: 66  VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           VT++ D S +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGL
Sbjct: 98  VTIHTDNSVSVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 156

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSAGND 168
           HGVGVS VNALS  L+L I+R+G ++ M F  G            +  +P+ V G   + 
Sbjct: 157 HGVGVSCVNALSKMLRLTIRRDGKVHVMEFSRGFVQNRIVEMANGVEVSPMKVMGPT-DK 215

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GTEV FLP +DIF   + F+Y+ L  RLRELSFLN+ V+I L D+RS +         G
Sbjct: 216 RGTEVHFLPDTDIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERSGKE--DDFSGTG 273

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQ 282
           G++ FV ++++ K  L  +     G R      NI +++AM+WN GY E VLCFTNNIPQ
Sbjct: 274 GVKGFVEFINKGKTVLHPNVFNAMGDRQSDQGTNIGVEVAMQWNSGYSEQVLCFTNNIPQ 333

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+GLR+A+TR I  Y++ +  +KK K  V GDD REG   VLS+K+P+P+FSSQ
Sbjct: 334 RDGGTHLTGLRAAMTRVINKYIDDTELAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQ 393

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEVR  VE  V+  L+ +L+E P +AKIIV K+++A+  R+AAR+ARD+TRRK
Sbjct: 394 TKDKLVSSEVRGPVEDIVSRLLNDYLQERPNDAKIIVGKIIEAARAREAARKARDMTRRK 453

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           GVLD   LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+
Sbjct: 454 GVLDGMGLPGKLADCQEKDPAMCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEK 513

Query: 463 ARFDKMLSSQEIGTLITAL----------GTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           AR++K+L+S EI  LITAL          G   G D F++ KLRYH+IIIMTDADVDGAH
Sbjct: 514 ARYEKLLTSNEILILITALGTGIGKGGGVGGTPGADDFNVAKLRYHRIIIMTDADVDGAH 573

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTLLLTFF+RQMP LI  G +YI +PPLY +  GK  QY+KD  +L+ +L+  +L +  
Sbjct: 574 IRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKAGKEEQYLKDTAALDGFLLRIALKDAS 633

Query: 573 ELF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                D   V++ + L        + + +I       D   +         N ++  +  
Sbjct: 634 VQTGADDSSVLTGDALGELARKHQQAESVISRLMGFMDAEALRAIADGVSLNLDTVADAE 693

Query: 632 VSLASKLAN--RLNFIAEKSEK--SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
           VS  +  A    LN     +E    +    +   + + R   G  +  VL    +     
Sbjct: 694 VSAVALQAKLRELNTTGAPAEVAGEFDVRSDKPILRISRRHHGNVKSSVLTQDFVVGADY 753

Query: 688 KYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLG 743
                 ++           ++        + KI+     +  +      G + QRYKGLG
Sbjct: 754 AVLAEAASTFHGLIGDGAKVMRGEGERRKEEKISDFRQAMRWLIGQAEHGTARQRYKGLG 813

Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           EMN +QLWETTL+P  R LL+V+I DA +AD +F+ LMGDEVEPRREFI++N+L +  +D
Sbjct: 814 EMNPAQLWETTLDPKVRRLLKVQIDDAIEADRVFTMLMGDEVEPRREFIEQNALRAGNID 873

Query: 803 I 803
           I
Sbjct: 874 I 874


>gi|27904523|ref|NP_777649.1| putative DNA gyrase subunit b [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|31076740|sp|Q89B37|GYRB_BUCBP RecName: Full=DNA gyrase subunit B
 gi|27903920|gb|AAO26754.1| putative DNA gyrase subunit b [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 804

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/806 (46%), Positives = 539/806 (66%), Gaps = 12/806 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y + +I+ILKGLDAVKKRP MYIG+TD  +GLHHM++EV+DN+IDE+L G+   I V
Sbjct: 2   KNTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S ++ D+GRGIPTD+H EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHDDNSISIQDDGRGIPTDIHDEEGISAAEVIMTVLHAGGKFDNTSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I R+  IY   + NG   N L + G     TGT++ F P+ +IF+   
Sbjct: 122 VVNALSKKLELFIYRDKKIYYQIYKNGYPKNTLSIIGYTKI-TGTKIRFWPNLEIFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN++ L  RLRELSFLNS+V I L    + +      + +GG++ F+ YL+++KKP+  
Sbjct: 181 QFNWEILSKRLRELSFLNSNVSIYL--DDAKKHINENFYQQGGLKEFIIYLNKNKKPIHS 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   ++N+ +++AM+WN G+ EN+ C+TNNIPQ+DGGTHLSG RSALTR + +Y++
Sbjct: 239 KIFYFSSKKNNVEVEIAMQWNKGFQENIYCYTNNIPQQDGGTHLSGFRSALTRTMNNYLD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    KK+K ++IGDD REG T+++SIK+ DP+FSSQTK KLVSSEV+S +ES VN+ L 
Sbjct: 299 KEGYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKLVSSEVKSALESLVNEFLM 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P E+K IV K++++S VR+AARRAR++TR+KG LD+  LPGKL+DC ERDP  S
Sbjct: 359 EFLLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDLIGLPGKLSDCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQ R+R+NQAILPL+GKILNVE+AR++KMLSSQE+ TLITALG GI
Sbjct: 419 EIYLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEKMLSSQEVTTLITALGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ ++  KLRYH+IIIMTDADVDG+HIRTLLLTFF+R MP +I  G+LYI +PPLY +T
Sbjct: 479 GKNEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPEIIQRGYLYIAQPPLYKVT 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK--NDLRNFIDDALKIDKLIKD 603
           +    +Y+KD+ ++E+Y ++ +L   I      K +  K    L+  I +   I  +   
Sbjct: 539 KNNKTRYIKDKNTMENYKLSTALENTILESNTDKEIKIKCNYTLKKIISEYKIIQTIFFK 598

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSIN 658
              N     + + +     N  +D+    +  +    +L   +  +       +++    
Sbjct: 599 IKDNFPLNILNEMLYHPKLNNLNDEVYVNNWINNFVIQLQKKSSSTRNYSAHITFNSKDK 658

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + L+K       +++  + + I S+  +       +++E     + +  N     I  
Sbjct: 659 IFEPLIKIQKNAEVKEYKFDITFINSYEYQKIYSLGKKLQEMIQKNIHIKKNNKTYSIKN 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
                + +     K + +QRYKGLGEMN  QLW+TT+NP+TR +L++ + +    + LF+
Sbjct: 719 FQKNFELLIQNSFKNVLIQRYKGLGEMNPEQLWKTTMNPETRRMLKITLHNIDTTNKLFN 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD VEPR+ FI+  +L +  +DI
Sbjct: 779 TLMGDSVEPRKLFIELYALKASNIDI 804


>gi|94266205|ref|ZP_01289914.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
 gi|93453212|gb|EAT03670.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
          Length = 804

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/806 (44%), Positives = 519/806 (64%), Gaps = 13/806 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +N  Y A+ I++L GL+ V+KRP+MYIG+T  E GLHH++YEV+DN+IDE+L G+  
Sbjct: 7   NETKNMDYGAEQIKVLSGLEGVRKRPAMYIGNTAFE-GLHHLVYEVVDNSIDEALAGHCS 65

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VTL+ DGS +V DNGRGIP  +H  EG+SA E++M  LHAGGKF+  +YKVSGGLHG
Sbjct: 66  RIAVTLHKDGSVSVEDNGRGIPVGMHPTEGVSALELVMCTLHAGGKFDHSTYKVSGGLHG 125

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS      IKR+G I+   + +GI ++ + V G   + +G+ +TFLP  +IF
Sbjct: 126 VGVSVVNALSVRTVAEIKRDGKIHRQHYRHGIKESEVEVVGETEH-SGSRITFLPDPEIF 184

Query: 183 SV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +   DF+Y+T+Q RLREL+FLN  V+I L D+R+    E    +KGG+ +FV +L+R++ 
Sbjct: 185 TEITDFDYETIQTRLRELAFLNRGVKILLHDERTG--AEDEFHFKGGLRSFVEHLNRNRT 242

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+   PI I+G +D++ +++  ++ +G++E +  + NNI  K+GG+H+ G R+ALT+ I 
Sbjct: 243 PVHAEPIFIEGEKDDVQVEVCFQYFEGFNERLYPYVNNIYTKEGGSHVVGFRAALTKCIN 302

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y       K  +  + GDD REG T V+S+++P+P+F  QTK KL +SEV+ +VE   +
Sbjct: 303 RYASDDIIPKNLREKLSGDDVREGITCVISVRVPNPQFEGQTKTKLGNSEVKWIVEGICH 362

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + +S++LEEHP EA+ I+ K +DA+  R+AARRA+DL+R+KG      L  KLA+C  + 
Sbjct: 363 EKISSYLEEHPQEARKILSKAVDAARAREAARRAKDLSRKKGSGVDVMLAAKLAECQSKK 422

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P++ E+FLVEGDSAGGSAKQGR R  QAILPLRGKI+NVE+ARFD++L+S+EI  +I AL
Sbjct: 423 PEEREIFLVEGDSAGGSAKQGRDRVFQAILPLRGKIMNVEKARFDRILNSEEIKQVIAAL 482

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ FD +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQM  LI  G +YI +PPL
Sbjct: 483 GTGIGREEFDSDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIEQGRVYIGQPPL 542

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           + ++RGK  Q+  D++SL ++L  Q+ SE +E+ C    V++  +L   + D     +L+
Sbjct: 543 FRLSRGKKEQFFLDDDSLNNFLYKQA-SEMLEVHCPDGQVLAGEELVKLLHDLTIYQRLV 601

Query: 602 KDFYP-NHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIAEKSEKSWHGSIN 658
                 N  +  +   V   +   +  +  E+  +L  +L      +       W  S  
Sbjct: 602 DYMERTNLWEEIVRFLVAQDIHTADQFESQELLENLHQRLGGGKFILGNIRPCRWRPSCY 661

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             D+  K  A  +                +       +I         +     +     
Sbjct: 662 EFDVAAKDKAHLLTTV---GPQIPLQPEYRAILRQYPKIAAFLDVGFQVAVKNQQHSAAD 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              LL  I +   KG S+QRYKGLGEMN  QLW TT+NP+ R LL+V+I DA +AD++F+
Sbjct: 719 WRELLTVIRAESFKGSSLQRYKGLGEMNPEQLWATTMNPENRILLQVRIEDAEKADEIFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRREFIQ ++L   +LDI
Sbjct: 779 TLMGDKVEPRREFIQAHALEVSSLDI 804


>gi|291278436|ref|YP_003495271.1| DNA gyrase subunit B [Deferribacter desulfuricans SSM1]
 gi|290753138|dbj|BAI79515.1| DNA gyrase, B subunit [Deferribacter desulfuricans SSM1]
          Length = 789

 Score =  816 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/805 (43%), Positives = 511/805 (63%), Gaps = 22/805 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SY+ +SI++L+GL+AV++RP MYIG  D   GLHH+IYEV+DN+IDE+  G+   I
Sbjct: 1   MSKNSYNEESIKVLEGLEAVRQRPGMYIGSVD-HRGLHHLIYEVVDNSIDEASAGFCKNI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           ++T+++D S T+ D+GRGIP  +H        EV+MT LHAGGKF + +Y  SGGLHGVG
Sbjct: 60  SITIHIDNSVTIEDDGRGIPVGIHPTMKKPTVEVVMTTLHAGGKFEKGAYYASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS +L++ +KR+G ++   +  G     L   G + N TGT++ F P  DIF  
Sbjct: 120 ISVVNALSEFLEVTVKRDGGVFFQRYEKGKPVTKLEKIGKS-NKTGTKIRFRPDIDIFED 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            DF++D LQ R REL++LN  V+I+  D+R  + +    F +GGI ++V YL++ K  L+
Sbjct: 179 LDFSHDVLQKRFRELAYLNPGVKITFNDERIDKKQ--EFFAEGGIVSYVKYLNKTKNTLL 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + P+ I+G  +++S+++A  +NDGY+E +L F NNI   +GGTH +G ++A TR   +++
Sbjct: 237 KEPVFIKGIHEDVSVEIAFTYNDGYNEQILSFVNNIHTHEGGTHEAGFKNAYTRIFNNFI 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+    K K S+ GDD REG ++V+S+++ DP F  QTK KL S+  ++ VE+ +N  L
Sbjct: 297 AKNN-LLKQKVSLTGDDIREGLSAVISVRLHDPIFEGQTKGKLGSTTAKTAVENVMNSTL 355

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + E++    KII+ K L A   R+AAR+A++LTRRK  L+I++LPGKLADC E+DP K
Sbjct: 356 PDFFEKNINYVKIILDKALQAYRAREAARKAKELTRRKNALEISTLPGKLADCQEKDPDK 415

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELF+VEGDSAGGSAKQ R R  QAILPL+GKI+NVE+ARFDK+LS+ EI  +ITALGTG
Sbjct: 416 AELFIVEGDSAGGSAKQCRDRRFQAILPLKGKIINVEKARFDKILSNDEIKAMITALGTG 475

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG  +FDINK+RY KIIIMTDADVDGAHI TLLLTFF+R +  +I  G+LYI +PPLY +
Sbjct: 476 IGHKNFDINKIRYKKIIIMTDADVDGAHITTLLLTFFYRYLREIIERGYLYIARPPLYKV 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK+ +Y+ DE+ +ED++    +              S   +   + + ++I    K  
Sbjct: 536 KKGKTEKYIHDEKEMEDFIFKNIIDNIEFPNISKT---SYKTILKGLKNYIQIRT--KYL 590

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINN 659
                +  I           +S  +   +    L + LN         KS  S++     
Sbjct: 591 KKGFTRELINALAEIDSLTKDSLSD--KTFVETLYDELNEKGILKPYNKSYISFNEEFEK 648

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            +I+ ++      E+ ++    I S   +  +    +I+        +  +G+K      
Sbjct: 649 YNIIFEK----GSEKVIINSELIDSPEFRELKRNFLKIKPLGKRPFEITIDGEKSVFDTY 704

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             +++++  IG KG+ +QRYKGLGEMN  QLWETT++P+ R L +VKI DA  AD+LFS 
Sbjct: 705 DEMMESLEEIGLKGVYVQRYKGLGEMNPQQLWETTVDPERRVLYKVKIEDAEAADELFSL 764

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGD V PRREFI+EN+L    LDI
Sbjct: 765 LMGDVVGPRREFIEENALNVKNLDI 789


>gi|283852478|ref|ZP_06369746.1| DNA gyrase, B subunit [Desulfovibrio sp. FW1012B]
 gi|283572086|gb|EFC20078.1| DNA gyrase, B subunit [Desulfovibrio sp. FW1012B]
          Length = 806

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/815 (42%), Positives = 499/815 (61%), Gaps = 21/815 (2%)

Query: 1   MSDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+  +    +YDA SI +L+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ 
Sbjct: 1   MSEEKKTAPQAYDASSITVLEGLSAVRKRPAMYIGSTD-IRGLHHLVYEVVDNSIDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I V +++DGS TVSDNGRGIP D+H +E   A EV+MT LHAGGKF+  +YKVSG
Sbjct: 60  GYCDRINVAVHLDGSVTVSDNGRGIPVDMHPKEHRPAVEVVMTVLHAGGKFDNDTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS +L++ ++R G  Y+  +  G+    + V G A  +TGT + F P 
Sbjct: 120 GLHGVGVSVVNALSEYLEVTVRRNGKKYQQRYERGVPVTQVTVIGEAE-NTGTTIRFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +IF    F+++TL  R  EL++LN  ++I   D R+ E         GGI+ FV+ L+ 
Sbjct: 179 EEIFETNQFSHETLAKRFEELAYLNRGLEIDFRDDRTSERVTYRF--DGGIKRFVADLNA 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +P++   I      D + +D A+++N  Y E V  F NNI  ++GGTHL+G ++ALTR
Sbjct: 237 G-EPVIHDIIEGLAEMDGVVVDFALQYNANYKEEVYTFANNIRTREGGTHLAGFKTALTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+EK+   KK K+ + GDD REG T+V+S+K+P+P+F  QTK KL +SEV  +V  
Sbjct: 296 GINTYIEKADIPKKFKQKLTGDDVREGLTAVISVKLPNPQFEGQTKTKLGNSEVVGIVSK 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++   EE+P +AK IV+K +DA+  R+AAR+A++L RRKG L   SLPGKLADC 
Sbjct: 356 IVFEAINVHFEENPKDAKAIVEKAVDAARAREAARKAKELVRRKGALSDHSLPGKLADCQ 415

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++P++SEL++VEGDSAGGSAKQGR    QAILPLRGKILNVER R DKML ++EI  LI
Sbjct: 416 SKNPEESELYIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRTDKMLGNKEIRNLI 475

Query: 479 TALGTGI--------GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           TA+G            +D+ +  +LRYHKI+IMTDADVDGAHIRTLLLTFF+R+   LI 
Sbjct: 476 TAMGPTPSMGDDESEEKDNENYARLRYHKIVIMTDADVDGAHIRTLLLTFFYRRYERLIQ 535

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           +G++YI +PPLY + +G   +++KD+E L  +L+ +   +        +   +  DL   
Sbjct: 536 SGYIYIAQPPLYRVFKGDFERFIKDDEELSQFLLGRIGQD--VTVASGEKRFAGADLTGL 593

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           ++    ++  I +    +         + G            +L   L   L       E
Sbjct: 594 LERIHFLEARIHEAAT-YGLPDDLLLALLGYDKLAPSDFAAEALPQGLPAYLREKGYALE 652

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR-IFSNRIEENYLTILSLIC 709
                  +   +    I+   Q +  +      S   +     +   + +     LS+  
Sbjct: 653 IESEEIDDEKRLYAVFIS-ANQARHRIAVEFFSSKIYRRAHETYGQLLADCPELPLSIER 711

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             +   + G   L   +     KG+++QRYKGLGEMN  QLWETT+NP+ RS L+V I D
Sbjct: 712 KEESRAVAGFFDLYKALMDDALKGVNIQRYKGLGEMNPEQLWETTMNPEKRSFLQVSIED 771

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A +A+D+FS+LMG++VE RR+FI+ N+L    LDI
Sbjct: 772 AGEANDIFSQLMGEKVEGRRDFIERNALSVRELDI 806


>gi|303246810|ref|ZP_07333087.1| DNA gyrase, B subunit [Desulfovibrio fructosovorans JJ]
 gi|302491827|gb|EFL51707.1| DNA gyrase, B subunit [Desulfovibrio fructosovorans JJ]
          Length = 810

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/818 (43%), Positives = 504/818 (61%), Gaps = 23/818 (2%)

Query: 1   MSDNIQNSS------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS +    +      YDA SI +L+GL AV+KRP+MYIG TD   GLHH+++EV+DN+ID
Sbjct: 1   MSQDNAPQASHGPQAYDASSITVLEGLSAVRKRPAMYIGSTDS-RGLHHLVWEVVDNSID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           ES+ G+ D I VT+++D S TVSDNGRGIP D+H +E   A EV+MT LHAGGKF+ ++Y
Sbjct: 60  ESMAGFCDRIVVTIHLDNSVTVSDNGRGIPVDMHPKEHRPAVEVVMTVLHAGGKFDNETY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS +L++ ++R+G  ++  +  G+   PL V G A + TGT + 
Sbjct: 120 KVSGGLHGVGVSVVNALSEYLEVTVRRDGKKHQQRYERGVPVTPLTVIGEA-DVTGTTIR 178

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P  +IF    FN+DTL  R  EL++LN  ++I   D+R+ E         GG++ FV+
Sbjct: 179 FKPDEEIFETNQFNHDTLVKRFEELAYLNRGLEIDYRDERTNERVTYRF--DGGLKRFVA 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            L+  ++ +    I   G  D I  D A+++N  Y E VL F NNI  ++GGTHL+G ++
Sbjct: 237 DLNAGEQTIH-DIIDGTGEIDGIVTDFALQYNANYKEEVLTFANNIRTREGGTHLAGFKT 295

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I +Y+EKS   KK K+ + GDD REG T+V+S+K+P P+F  QTK KL +SEV  
Sbjct: 296 ALTRAINTYIEKSDLPKKFKQKLTGDDVREGLTAVISVKLPGPQFEGQTKTKLGNSEVAG 355

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +V   V + ++   EE+P +AK IV+K +DA+  R+AAR+A++L RRKG L   SLPGKL
Sbjct: 356 IVAKVVFEAMNVHFEENPKDAKSIVEKAVDAARAREAARKAKELVRRKGALSDHSLPGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC  ++P++SELF+VEGDSAGGSAKQGR    QAILPLRGKILNVER R DKML ++EI
Sbjct: 416 ADCQSKNPEESELFIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRTDKMLGNKEI 475

Query: 475 GTLITALGTGIG-------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
             LITA+G           +++ +  +LRYHKI+IMTDADVDGAHIRTLLLTFFFR+   
Sbjct: 476 RNLITAMGPTPAMGEEDEEKEAENYARLRYHKIVIMTDADVDGAHIRTLLLTFFFRRYER 535

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI NG++YI +PPLY + +G   +++KD+E L  +L+ +   +        + V S   L
Sbjct: 536 LIENGYIYIAQPPLYRVFKGDFEKFIKDDEELSTFLMGRIGQD--VTVASGEKVFSGEAL 593

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            + +++   ++  I +         I   ++       SD   + +    L   L     
Sbjct: 594 SSLLENIRSLEARIHEAAAYGLPEEILTILLGYDRLAPSDFASHETFPQGLVPYLREKGF 653

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR-IFSNRIEENYLTILS 706
           + E       +   +    IA   Q +  +      S   ++    +   + E     L+
Sbjct: 654 ELEIEAEEIDDEKRLYAVFIA-ANQARHRIAVEFFSSKIYRHAHETYGELLAECPEMPLT 712

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
           +    +  ++     L   +     KGI++QRYKGLGEMN  QLWETT+NP+ RS L+V 
Sbjct: 713 ITRKEESRQVASFFELYKALMDDALKGINIQRYKGLGEMNPEQLWETTMNPEKRSFLQVS 772

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           I DA  A+D+F +LMG++VE RR FI+ N+L    LDI
Sbjct: 773 IQDAGDANDIFDQLMGEKVEGRRTFIERNALTVRELDI 810


>gi|327398178|ref|YP_004339047.1| DNA gyrase subunit B [Hippea maritima DSM 10411]
 gi|327180807|gb|AEA32988.1| DNA gyrase, B subunit [Hippea maritima DSM 10411]
          Length = 787

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/799 (42%), Positives = 493/799 (61%), Gaps = 16/799 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A+ I++LKGL+AV+KRP+MYIG T  E GLHH++YEV+DN+IDE++ GY D I V 
Sbjct: 2   AKYTAEDIKVLKGLEAVRKRPAMYIGGTSVE-GLHHLVYEVVDNSIDEAMAGYCDTINVY 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N D S TV DNGRGIP D+H  E I A  +++T LHAGGKF+ K+YKVSGGLHGVG+SV
Sbjct: 61  INEDNSITVEDNGRGIPVDIHPVEKIPAVTLVLTTLHAGGKFDNKNYKVSGGLHGVGISV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL + +KREG IY   F  G     L V G    ++GT +TFLP   IF + +F
Sbjct: 121 VNALSEWLVVEVKREGKIYTQRFEKGTPTTDLEVIGQTK-ESGTVITFLPDKGIFEITEF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLREL+FLN  ++ISL D+R+ +    T  Y  G+ +FV YL + K  L   P
Sbjct: 180 SYDILLKRLRELAFLNKGIKISLTDRRTDKS--ETFQYDKGLVSFVEYLSKTKNKLFDEP 237

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +    +  ++ ++LA  + D Y   +  F N+I   +GG HLS  +S LT+ I  Y + +
Sbjct: 238 VYFNITEGSVLVELAFLYTDTYSSTIYTFANSINTAEGGVHLSAFKSVLTKTINRYAKAN 297

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
               K      GDD REG  +VLS+++P+P+F  QTK KLV++++++V+++ + + L+ +
Sbjct: 298 N-LVKGNVVFNGDDVREGIVAVLSVRLPNPQFEGQTKTKLVNTDIKNVIQTKLYEKLNEY 356

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EEHP  AK+I+ KV  A   R+AAR+A++L RRK V +   LPGKLADC E+DP K+EL
Sbjct: 357 FEEHPQIAKLIIDKVSRAFNAREAARKAKELVRRKTVFESKGLPGKLADCQEKDPLKAEL 416

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FLVEGDSAGGSAKQ R R  QAILPL+GKILN ER    K+L S+EI  +ITA+G+G+ +
Sbjct: 417 FLVEGDSAGGSAKQARDRVYQAILPLKGKILNTERTNLKKVLESEEIRNIITAIGSGVNE 476

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
             F+I+ +RYHKIIIMTDADVDG+HI+TL+LT FFR    LI NG++YI +PPLY    G
Sbjct: 477 S-FNIDDVRYHKIIIMTDADVDGSHIQTLILTLFFRYFRELIENGYIYIAQPPLYRCKIG 535

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K   Y+KDE+ ++++L+N+ + +   +       +SK++ R  +D  L  + ++      
Sbjct: 536 KKEFYIKDEKQMKEFLVNKGIDDFTPIV--DGKELSKDEFRVILDKLLVYEGMVDKLSKV 593

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVK 665
           +    I +       +  S    + +    + +RLN   +++ +     I       + +
Sbjct: 594 YPSEEIIR-----CLSIVSPSLDDFNDEDGIKDRLNACLKENSQILIKQIEQQGDSFVFR 648

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
                  ++  +      S   K    ++       L        G+ I+      +L  
Sbjct: 649 FEIDNEDKEIFISKEFFNSHEYKLISQYAPSKNMLGLPPFKAKVKGELIEFKTIKDMLSF 708

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           I    +KG+ +QRYKGLGEMN  QLWETT++P TR LL+V I+DA +AD +F+ LMG+  
Sbjct: 709 IEDRAKKGLEIQRYKGLGEMNPEQLWETTMDPKTRRLLQVTISDAEEADRVFNMLMGNNP 768

Query: 786 EPRREFIQENSLPSA-LDI 803
           + R+EFI++N+     LD+
Sbjct: 769 QLRKEFIEKNAKFVKHLDV 787


>gi|88608222|ref|YP_506597.1| DNA gyrase, B subunit [Neorickettsia sennetsu str. Miyayama]
 gi|88600391|gb|ABD45859.1| DNA gyrase, B subunit [Neorickettsia sennetsu str. Miyayama]
          Length = 783

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/802 (49%), Positives = 547/802 (68%), Gaps = 22/802 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N+ Y ADSI++LKGL+AV+KRP MYIGDTD  SGLH M+YEV+DN++DESL GY   I
Sbjct: 1   MSNTDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +++DGS +V DNGRG+PTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVG
Sbjct: 61  EVVIDVDGSISVEDNGRGMPTDMH-GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS WLKL I R+G ++   F NG     L VTG  G+ TGT V FLPS   F  
Sbjct: 120 VSVVNALSDWLKLTIYRDGKVHFAEFENGETVRSLSVTGECGDKTGTLVHFLPSRSTFKN 179

Query: 185 QDF-NYDTLQHRLRELSFLNSSVQISLIDKRSPEPR-EITMFYKGGIEAFVSYLDRHKKP 242
               ++ TL++R RELSFLN  ++ISL+D R      ++  F  GG E FV+YLDR K+P
Sbjct: 180 TTEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKVVFFSSGGTEEFVAYLDRSKQP 239

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +  +PIR+ G  D+I+ID++M+WND Y+ENVLCFTNNI QKDGGTHL+ LRSA+TR + +
Sbjct: 240 IHSTPIRVVGGVDSIAIDVSMQWNDSYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMHN 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y+ K    KKDK  V G+D REG +++LS+K+PDP+FSSQTKEKL+SSEV+ V+E  V+D
Sbjct: 300 YIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEKIVSD 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L++WLEE+P  A++I +KV+++++ R+AA++ARDLTRRKG L+I +LPGKLADC E+ P
Sbjct: 360 ALASWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEKSP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           + SEL +VEGDSAGGSAKQGR R+ QA+LPLRGKILNVE+ RF K++ S EIG LI ALG
Sbjct: 420 ELSELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           T IG++ F+I+K+RYHKIIIMTDADVDG HIRTLLLTFFFR    ++  G+LYI + PLY
Sbjct: 480 TSIGEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLY 539

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + R  +  Y++D+ +LE+YL+++ +  +      +  V +   L+  +   L + K+++
Sbjct: 540 KVMRKGADVYLRDDAALEEYLLDRIVKGKELE-GANGNVYTGQSLKRVVQQCLVLSKILE 598

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
            F        +E   + G       +E +  L ++    ++F A      W     +S +
Sbjct: 599 KFDYRIPLEILEVVFLCG-------EEADPHLLAERVALISFGA------WTVVREDSSL 645

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
             +R  +G++ ++      +     +        I + +    +   NG+   I      
Sbjct: 646 FFERTFQGLRNRYEYSPLFV-PEDLEKMAKIREAISDIFYPGFARFNNGEYHSILAFIRD 704

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
            D++    R G+ +QR+KGLGEMN  QLW TTL+P  R++ +V I +A+ AD + S LMG
Sbjct: 705 ADSV---ARAGMVLQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTIEEAAVADQMCSMLMG 761

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D V PRR+FI  N+L +  +D+
Sbjct: 762 DAVGPRRDFIVNNALNASNIDV 783


>gi|94264231|ref|ZP_01288026.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
 gi|93455342|gb|EAT05546.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
          Length = 804

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/806 (44%), Positives = 519/806 (64%), Gaps = 13/806 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +N  Y A+ I++L GL+ V+KRP+MYIG+T  E GLHH++YEV+DN+IDE+L G+  
Sbjct: 7   NETKNMDYGAEQIKVLSGLEGVRKRPAMYIGNTAFE-GLHHLVYEVVDNSIDEALAGHCS 65

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VTL+ DGS +V DNGRGIP  +H  EG+SA E++M  LHAGGKF+  +YKVSGGLHG
Sbjct: 66  RIAVTLHKDGSVSVEDNGRGIPVGMHPTEGVSALELVMCTLHAGGKFDHSTYKVSGGLHG 125

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS      IKR+G I+   + +G+ ++ + V G   + +G+ +TFLP  +IF
Sbjct: 126 VGVSVVNALSVRTVAEIKRDGKIHRQHYRHGLKESEVEVVGETEH-SGSRITFLPDPEIF 184

Query: 183 SV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +   DF+Y+T+Q RLREL+FLN  V+I L D+R+    E    +KGG+ +FV +L+R++ 
Sbjct: 185 TEITDFDYETIQTRLRELAFLNRGVKILLHDERTG--AEDEFHFKGGLRSFVEHLNRNRT 242

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+   PI I+G +D++ +++  ++ +G++E +  + NNI  K+GG+H+ G R+ALT+ I 
Sbjct: 243 PVHAEPIFIEGEKDDVQVEVCFQYFEGFNERLYPYVNNIYTKEGGSHVVGFRAALTKCIN 302

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y       K  +  + GDD REG T V+S+++P+P+F  QTK KL +SEV+ +VE   +
Sbjct: 303 RYASDDIIPKNLREKLSGDDVREGITCVISVRVPNPQFEGQTKTKLGNSEVKWIVEGICH 362

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + +S++LEEHP EA+ I+ K +DA+  R+AARRA+DL+R+KG      L  KLA+C  + 
Sbjct: 363 EKISSYLEEHPQEARKILSKAVDAARAREAARRAKDLSRKKGSGVDVMLAAKLAECQSKK 422

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P++ E+FLVEGDSAGGSAKQGR R  QAILPLRGKI+NVE+ARFD++L+S+EI  +I AL
Sbjct: 423 PEEREIFLVEGDSAGGSAKQGRDRVFQAILPLRGKIMNVEKARFDRILNSEEIKQVIAAL 482

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ FD +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQM  LI  G +YI +PPL
Sbjct: 483 GTGIGREEFDSDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIEQGRVYIGQPPL 542

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           + ++RGK  Q+  D++SL ++L  Q+ SE +E+ C    V++  +L   + D     +L+
Sbjct: 543 FRLSRGKKEQFFLDDDSLNNFLYKQA-SEMLEVHCPDGQVLAGEELVKLLHDLTIYQRLV 601

Query: 602 KDFYP-NHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIAEKSEKSWHGSIN 658
                 N  +  +   V   +   +  +  E+  +L  +L      +       W  S  
Sbjct: 602 DYMERTNLWEEIVRFLVAQDIHTADQFESQELLENLHQRLGGGKFILGNIRPCRWRPSCY 661

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             D+  K  A  +                +       +I         +     +     
Sbjct: 662 EFDVAAKDKAHLLTTV---GPQIPLQPEYRAILRQYPKIAAFLDVGFQVAVKNQQHSAAD 718

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              LL  I +   KG S+QRYKGLGEMN  QLW TT+NP+ R LL+V+I DA +AD++F+
Sbjct: 719 WRELLTVIRAESFKGSSLQRYKGLGEMNPEQLWATTMNPENRILLQVRIEDAEKADEIFT 778

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRREFIQ ++L   +LDI
Sbjct: 779 TLMGDKVEPRREFIQAHALEVSSLDI 804


>gi|29840266|ref|NP_829372.1| DNA gyrase subunit B [Chlamydophila caviae GPIC]
 gi|29834614|gb|AAP05250.1| DNA gyrase, subunit B [Chlamydophila caviae GPIC]
          Length = 806

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/819 (44%), Positives = 514/819 (62%), Gaps = 33/819 (4%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + +  SYDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY   
Sbjct: 2   DAKEKSYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEE------GISAAEVIMTRLHAGGKFNQKSYKVS 117
           I V +  DG  T+SDNGRGIP  +H++E       +SA EV++T LHAGGKF++ SYKVS
Sbjct: 61  IYVRILEDGGITISDNGRGIPIQIHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNAL+  L   + ++   Y+M F  G+    L   G      GTE+TF P
Sbjct: 121 GGLHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTALQPLGVTDKQ-GTEITFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS   F+   L  RLREL+FLN  + I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DNKIFSSCVFDRSILIKRLRELAFLNRGITIVFEDDRDVSFDKVVFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQG----SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L   PI I G       +I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKESLFPEPIYISGIRTGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + +Y++    +K DK S+ G+D REG T+V+S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + EE+P  AK+IV+KV  A+  R+AA++AR+LT RK  LD A LPGK
Sbjct: 360 SVSQQITGEALTTFFEENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IGT+I ALG GIG D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++DYL+   + +   +F +    IS   L +F+  
Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLGVGDSKLVFKNGGREISGEALDSFVKL 599

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L ++  I          F E   +    +             +     +   EK ++  
Sbjct: 600 ILNVESFIVALEKKAIP-FSEFLEMRSETSGYPLYYCPPKSGKQGGRYFHSTEEKDKEVL 658

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LICNG 711
                +S  +V+           L  +++F+   +  R +   I        S  +I N 
Sbjct: 659 SSEDPDSVKVVE-----------LYKTAVFAEIQEELRDYGLDIRHYLNPKDSEMVITNE 707

Query: 712 DK----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           D             ++D + ++GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV +
Sbjct: 708 DSKTLPYTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSL 767

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
            DA +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 768 KDAVEADHIFTMLMGEEVPPRREFIENHALSVKMNNLDI 806


>gi|319940695|ref|ZP_08015037.1| DNA gyrase subunit B [Sutterella wadsworthensis 3_1_45B]
 gi|319805846|gb|EFW02613.1| DNA gyrase subunit B [Sutterella wadsworthensis 3_1_45B]
          Length = 849

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/829 (44%), Positives = 509/829 (61%), Gaps = 37/829 (4%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +   ++Y+A SIQIL+GL+AV+KRP MYIGDT   SGLHH++YEV+DN+IDE+L G+A  
Sbjct: 27  DQNPNAYNAASIQILEGLEAVRKRPGMYIGDTADGSGLHHLVYEVVDNSIDEALAGFASH 86

Query: 64  ITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           I VT++ D S +V+D+GRGIPT     D H +   SAAE+ +T LHAGGKF+   YK+SG
Sbjct: 87  IEVTIHTDNSISVTDDGRGIPTAIKWDDKH-DPKRSAAEIALTELHAGGKFDNNGYKISG 145

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV------TGSA------- 165
           GLHGVGVS VNALS+WL+L ++R+G    + F  G + N L+       TG +       
Sbjct: 146 GLHGVGVSCVNALSTWLRLVVRRDGEARSLEFRRGKVVNRLIENAIDPATGKSVRISPMT 205

Query: 166 ----GNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                N  GTEV FLP  +IF    +F+Y+TL  RLRELSFLNS V I+L D R+    E
Sbjct: 206 LLGPTNRRGTEVHFLPDLEIFEQVTEFSYETLLSRLRELSFLNSGVFITLKDLRT--SHE 263

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCF 276
             +    G+ A+V Y ++ +  L       + +       + +++AM+W D Y+E++  +
Sbjct: 264 AQLKTDKGLIAYVEYKNQSRTVLHPKIFHAKETVLSNGSPVEVEVAMQWQDSYNESLTAY 323

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTH++GLR A+TR + +Y+ K+  +KK K    GDD REG T VLS+K+P 
Sbjct: 324 TNNIPQRDGGTHVTGLRGAMTRVLKNYIAKNELAKKSKVDPDGDDMREGLTCVLSVKIPQ 383

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR  VE  V+  L  +LE++P +AK+I +K++ A+  R+AAR+AR
Sbjct: 384 PKFSSQTKDKLVSSEVRPAVEDVVSRELELYLEQNPTDAKLICEKIITAARAREAARKAR 443

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTR+ G      LPGKLADC E++P  SELFLVEGDSAGGSAKQGR+ + QAILPLRGK
Sbjct: 444 DLTRKTG--MGGGLPGKLADCREKNPAYSELFLVEGDSAGGSAKQGRNSQYQAILPLRGK 501

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           +LNVE+A  DK+L S++I  L  ALGT IG+  FDI KLRYH+IIIMTDADVDGAHIRTL
Sbjct: 502 VLNVEKAAQDKLLDSEQIRMLTLALGTNIGK-LFDIEKLRYHRIIIMTDADVDGAHIRTL 560

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRG--KSLQYVKDEESLEDYLINQSLSEEIEL 574
           LLT FFRQMP LI NG++YI +PPLY + +      +++KDE  +  YL + +LS     
Sbjct: 561 LLTLFFRQMPELIENGYVYIAQPPLYKVQKNSKDKGRFLKDEAEMNAYLKDLALSGAALY 620

Query: 575 FCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
              +    I    L   + + L+ + +I       D+  +         + E+       
Sbjct: 621 PSTNAEEPIRGTALETLVGEYLQANAVISRLGGAIDRAVLLAIAAGVELSLENT-FAAQQ 679

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
            A +L   +     K E  W+       + + R   G  +   L    + S   +  R  
Sbjct: 680 SAERLEKEMRDPNVKIEAYWNEEEEKHVLKIHRTRHGNIKTTTLLPEFLLSADYQKLRES 739

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
           S  ++        +   G++  +      +  +     KG+  QRYKGLGEM   QL +T
Sbjct: 740 SLMLQGVIQEGAEIERGGEREPVKNFAEAVGWLMRQAEKGLIRQRYKGLGEMTPEQLRDT 799

Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           T++P  R +LRV+I DA+ AD +FS LMGD VEPRR FI+ N+L   +D
Sbjct: 800 TMDPAVRRMLRVRIEDAANADAIFSMLMGDVVEPRRAFIESNALFGNID 848


>gi|297570053|ref|YP_003691397.1| DNA gyrase, B subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925968|gb|ADH86778.1| DNA gyrase, B subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 801

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/811 (44%), Positives = 518/811 (63%), Gaps = 18/811 (2%)

Query: 1   MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSDN    + Y A  I++L GL+ V+KRP+MYIG+T  E GLHH++YEV+DN+IDE+L G
Sbjct: 1   MSDNETVTNDYGAAQIKVLTGLEGVRKRPAMYIGNT-AEEGLHHLVYEVVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I +T++ DGS +  DNGRGIP ++H  EG+SA E++M  LHAGGKF+  +YKVSGG
Sbjct: 60  YCDRIKITIHKDGSVSSEDNGRGIPVEIHPTEGVSALELVMCTLHAGGKFDHSTYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS      IKR G I+  ++  G+ +  + V G     +GT++TFLP  
Sbjct: 120 LHGVGVSVVNALSLKTIAEIKRNGKIHRQTYRYGVKEGEVEVVGETE-KSGTKITFLPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF+    F Y+ +Q RLREL+FLN +V+I + D+R+    E    +KGGI++FV YL+R
Sbjct: 179 GIFTETTEFKYEIIQARLRELAFLNKNVKIKIHDERTG--AEDEFHFKGGIKSFVEYLNR 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           ++ P+   P+ +QG +DN+ +++A ++ +GY E +  + NNI  K+GG+H++G R ALT+
Sbjct: 237 NRTPVHSEPVFVQGGKDNVQVEVAFQYFEGYTERLHSYVNNIYTKEGGSHVAGFRMALTK 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y       K  +  + GDD REG T ++S ++P P+F  QTK KL +SEV+ +V+S
Sbjct: 297 CINRYASDDIVPKNLREKLSGDDVREGITCIISTRVPSPQFEGQTKTKLGNSEVKYIVDS 356

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++ +S +LEE+P EA+ I+ K ++A+  R+AARRA++L+R+KG      +  KLA+C 
Sbjct: 357 ICHEKISRYLEENPQEARKILSKAVEAARAREAARRAKELSRKKGSGMDVLMAAKLAECQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP K E+FLVEGDSAGGSAKQGR R  QAILPLRGKI+NVE+ARF+K+LSS+EI  +I
Sbjct: 417 TKDPAKREIFLVEGDSAGGSAKQGRDRFFQAILPLRGKIMNVEKARFEKVLSSEEIKQII 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALGTGIG++ FD++KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQM  L+ NG +YI +
Sbjct: 477 AALGTGIGKEEFDLDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLVENGNVYIGQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY ++RGK  ++  D+ SL  +L  Q+ S    +  +    ++  +L   + D     
Sbjct: 537 PPLYRLSRGKKEKFFLDDYSLNSFLFQQA-STMCSVNTEDGRTVAGEELVALLKDLSHYQ 595

Query: 599 KLIKDFYP-NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL----NFIAEKSEKSW 653
           +L++     N  +  +   V   V + +  +  N  L ++L  RL      +       W
Sbjct: 596 RLVEYLERSNLWEDILRFLVTENVHSADQFE--NEPLLNQLHQRLSGEKFILGNIRPCRW 653

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
             S    D  +K  A  +                +       R+        ++     +
Sbjct: 654 RPSCYEFDAALKDKAHLLVTV---GPQIPLLPEYRQVLKHYPRVSPYLDGKFTVEVKNQQ 710

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I++     +L++I S   KG S+QRYKGLGEMN  QLW TT+NP+ R LL+V I DA  A
Sbjct: 711 IEVNSWREMLESIRSESFKGSSLQRYKGLGEMNPEQLWATTMNPENRILLQVTIDDAEGA 770

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D++F+ LMGD+VEPRR+FIQ N+L   +LDI
Sbjct: 771 DEIFTTLMGDKVEPRRDFIQSNALEVSSLDI 801


>gi|308273672|emb|CBX30274.1| DNA gyrase subunit B [uncultured Desulfobacterium sp.]
          Length = 815

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/821 (42%), Positives = 517/821 (62%), Gaps = 28/821 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             + ++Y +DSI++L+GL+AV+KRPSMYIG+ D + GLHH++YE++DN+IDES+ G+ + 
Sbjct: 2   KEEQNTYTSDSIKVLEGLEAVRKRPSMYIGNIDLQ-GLHHLVYEIVDNSIDESMAGFCNF 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S +V D+GRGIP  +HK E + AAEV+M +LHAGGKF+  SYKVSGGLHGV
Sbjct: 61  INVIIHTDNSVSVEDDGRGIPVGIHKTEKVPAAEVVMLKLHAGGKFDNDSYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I  +G IY  +F  G     L +TG      GT++ F P ++I +
Sbjct: 121 GVSVVNALSVRLDLEIYTDGKIYSQAFEKGKKVTELTITGETK-KRGTKIHFKPDTEILT 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+++ +  RLREL+FLN  ++I + D+RS +      +Y+GGI +FV ++++H   L
Sbjct: 180 TDNFDFEVISKRLRELAFLNKKLRIKVEDERSEKK--EEFYYEGGITSFVEFINKHTVVL 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I  +G+++++ +++ +++ND + E +  F NNI   +GG H+ G ++ALTR I  Y
Sbjct: 238 HSP-IYFEGNKNDVMVEVCLQYNDTFSEKLFSFANNINTVEGGFHVIGFKTALTRVINQY 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
                 SK  K  + G+D REG T+V+SI++ +P+F  QTK KL +SE++ +VES VN+ 
Sbjct: 297 AANGNLSKDLKEKLSGEDVREGLTAVISIRLKNPQFEGQTKTKLGNSEIKGLVESLVNEK 356

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ + EE+P  AK ++ + +DA+  R AAR+ARDL R KG +  A+LPGKLADC   +P 
Sbjct: 357 LAMFFEENPAIAKKVLSRAIDAARARFAARKARDLVRSKGSMVDATLPGKLADCQSSEPS 416

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+FLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+AR D++L S+EI  +I ALGT
Sbjct: 417 EREIFLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARIDQILKSEEIKNIIIALGT 476

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+G +   ++ +RYHKIIIMTDADVDG+HIRTLLLT F+RQ+P +I  G+LYI +PPL  
Sbjct: 477 GVGGEENVVDNIRYHKIIIMTDADVDGSHIRTLLLTLFYRQLPEVIEKGYLYIAQPPLLK 536

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK+ +Y KDE+ L DY I     +           +S   L  F+ +  +   +++ 
Sbjct: 537 VGKGKNEKYFKDEQELNDYTIKIFCEQNKLFIESDTQTLSDYGLYLFVTNLAEYSSVLRR 596

Query: 604 FYPNHDK-TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK-SWHGSINNSD 661
              N  K  F+E  + + V +    Q+ +    S + N L+    K+E+ +W+   N  +
Sbjct: 597 LERNGIKADFVEILLKNHVEDKSFLQDYDK--MSYIKNLLSEKKYKTEEINWNPERNIYE 654

Query: 662 ILVKR------------IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           + V+             + +    +  +    I+S   +        I +       +  
Sbjct: 655 LTVEYPEGLSDNKRQEGLVKDETNRVKIGIGLIYSADYQKCVNIGQNIFKYDKPPFYITG 714

Query: 710 NGD------KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
             D      + KI     LL  I    +KG+ +QRYKGLGEMN  QLW TT+NP+ R+LL
Sbjct: 715 KDDTEPVNPETKINDKMELLGIILEEAKKGLVIQRYKGLGEMNPDQLWSTTMNPEKRNLL 774

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           +VK+ D+   +++F+ LMGD+VEPRREFIQ N+L    LDI
Sbjct: 775 QVKVGDSVDTNEIFTILMGDDVEPRREFIQNNALDVRMLDI 815


>gi|242281240|ref|YP_002993369.1| DNA gyrase, B subunit [Desulfovibrio salexigens DSM 2638]
 gi|242124134|gb|ACS81830.1| DNA gyrase, B subunit [Desulfovibrio salexigens DSM 2638]
          Length = 798

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/801 (45%), Positives = 504/801 (62%), Gaps = 10/801 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N  Y A+SI +L+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ GY D   V
Sbjct: 4   NQDYSAESITVLEGLAAVRKRPAMYIGSTD-IRGLHHLVYEVVDNSIDEAMGGYCDKFKV 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+MD S TVSDNGRGIP D+H ++   A E++MT LHAGGKF+  +YKVSGGLHGVGVS
Sbjct: 63  TLHMDNSVTVSDNGRGIPVDIHPKKKKPALEIVMTVLHAGGKFDNDAYKVSGGLHGVGVS 122

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            VNALS  L+  ++R G IY  S+  G+   PL   G A   TGT + F P  +IF    
Sbjct: 123 CVNALSEHLEATVRRGGKIYRQSYERGVPTGPLECIGDA-VTTGTTIRFRPDEEIFETNQ 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+++TL+ R REL++LN  ++I  +D+RS E    +    GGI +FV  L++ +  +   
Sbjct: 182 FDFNTLKKRFRELAYLNKGLEIEFVDERSNESA--SFKADGGIVSFVEDLNKGQTTV-SE 238

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +   DN+  +LA+++N  + EN   F NNI   +GGTHL+G + ALTR I +Y++ 
Sbjct: 239 IIYAESETDNVITELAVQYNTAFKENTHTFANNIRTVEGGTHLAGFKGALTRAINTYIQN 298

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           S   KK K  + GDD REG T+V+S+K+PDP+F  QTK KL +SE+  +V   V D LS+
Sbjct: 299 SDLPKKLKIKLSGDDVREGLTAVISVKLPDPQFEGQTKTKLGNSEMVGIVSGMVYDKLSS 358

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + +E+P +AK IV+KV+DA+  RDAAR+ARDL RRKG L   SLPGKLADC  +DP +SE
Sbjct: 359 YFQENPKDAKAIVEKVVDAARARDAARKARDLVRRKGALSDHSLPGKLADCQSKDPAESE 418

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSAGGSAKQGR+ ++QAILPLRGKILNVE+ RFDKML ++EI  LITA+G GIG
Sbjct: 419 LFIVEGDSAGGSAKQGRNPKHQAILPLRGKILNVEKTRFDKMLGNKEIRALITAMGIGIG 478

Query: 487 --QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
             +   D +KLRYHK++IMTDADVDG+HIRTLLLTFFFRQ   LI  G LYI +PPLY I
Sbjct: 479 QEEGEKDFDKLRYHKVVIMTDADVDGSHIRTLLLTFFFRQYEELIERGHLYIAQPPLYRI 538

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK  +++KD+  L   LI + ++++I +  +      +  L   +DD   I   I + 
Sbjct: 539 AKGKYEKFIKDDSELYSLLIER-VAKDITIKTECGQEYHQESLIELLDDIRFIKGKIGEA 597

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
                   +   ++S       +   +    S +        +   +           + 
Sbjct: 598 ANMGISDALFAKLVSLDEKMTPEMFADSDPQSFIFKMEESGYKVIIEREETETEGEARVY 657

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI-EENYLTILSLICNGDKIKITGPCSLL 723
                    +  L      S   +     + +I +E       +    ++ ++ G  SLL
Sbjct: 658 VVFENENGHRTRLAVEFFNSKLFRNTYDRNRKIVDECDGIDFKITRGENETEVRGIFSLL 717

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D +     KGI++QRYKGLGEMN  QLWETT++P+ R++L+V I DA+ A+D+F  LMGD
Sbjct: 718 DGVMEEAYKGINLQRYKGLGEMNPEQLWETTMDPEKRTMLQVTIEDATAANDIFEDLMGD 777

Query: 784 EVEPRREFIQENSLPS-ALDI 803
            VEPRREFI++N+L    LDI
Sbjct: 778 NVEPRREFIEKNALAVQELDI 798


>gi|258406590|ref|YP_003199332.1| DNA gyrase, B subunit [Desulfohalobium retbaense DSM 5692]
 gi|257798817|gb|ACV69754.1| DNA gyrase, B subunit [Desulfohalobium retbaense DSM 5692]
          Length = 794

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/801 (45%), Positives = 515/801 (64%), Gaps = 9/801 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++ + Y ADSI IL+GL AV+KRP+MYIG TD + GLHH++YEV+DNAIDE++ GY + +
Sbjct: 1   MEKNQYTADSITILEGLSAVRKRPAMYIGSTDLQ-GLHHLVYEVVDNAIDEAMAGYCNRV 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+++D S T+SD+GRGIP D+H ++   A EV+MT LHAGGKF+ ++YKVSGGLHGVG
Sbjct: 60  KVTIHLDNSVTISDDGRGIPVDMHPKQNKPAVEVVMTVLHAGGKFDNETYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS +L++ I+R G  Y   +  G+  + L   G   + TGT + F P  +IF+ 
Sbjct: 120 VSVVNALSEYLEVTIQRSGTKYHQRYERGLPKSELEERGPT-HRTGTTIRFRPDEEIFAD 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F   TL  R  EL++LNS ++I+  D+R+ E +     Y GGI +F+  L+  +  L 
Sbjct: 179 LNFTAATLTKRFEELAYLNSGLEIAFFDERTQESQR--FKYDGGIRSFIENLNADEGALH 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              +   G  +N++I+ A+++N G+ ENV  F NNI  K+GG+HLSG ++ALTR I +Y+
Sbjct: 237 S-IVYGHGEVENVAIEFALQYNGGFKENVHSFANNIRTKEGGSHLSGFKTALTRNINTYL 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
             +   KK K  + GDD REG T+V+S+K+P P+F  QTK KL +SEV   V S ++  L
Sbjct: 296 LHADLPKKFKTKITGDDVREGLTAVVSVKLPMPQFEGQTKTKLGNSEVAGHVASVISSHL 355

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +LEE+P +AK IV+K++DA+  RDAAR+A+DL RRK  L   +LPGKLADC  +DPK+
Sbjct: 356 GTYLEENPKDAKAIVEKIVDAARARDAARKAKDLVRRKSALGDNALPGKLADCQSKDPKE 415

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGR  + QAILPLRGKILNVE+ RFDKML ++EI  LITA+G G
Sbjct: 416 SELFIVEGDSAGGSAKQGRDPKFQAILPLRGKILNVEKTRFDKMLENKEIKHLITAMGAG 475

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++  ++ KLRYHK+IIMTDADVDGAHIRTLLLTFFFRQ P LI +G+LYI +PPLY +
Sbjct: 476 IGEEEINLEKLRYHKVIIMTDADVDGAHIRTLLLTFFFRQYPQLIEHGYLYIAQPPLYRV 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +G   +++  E  L+ YL+ + +S+E+++   S+       L   +D  + +   ++D 
Sbjct: 536 HKGNFERFLSTENELKQYLMQR-ISDELKVTTPSEHAFEGQALVQLLDSIVALQDKMRDV 594

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
                +  +   ++        +   +  L +     +  +    E         S   +
Sbjct: 595 ANFGVQEDLFWDILQYGQRLRPETLRDSELYTPFFEYMEQLGYDLEVEEEEEEEESRWYL 654

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
             I R    +  L      S   K   +I       +   I ++      + I  P  LL
Sbjct: 655 NIIDR-NDHRVHLGIEFFNSKLYKIAYQILDELKSHSPELIFTVTSKSTSLDIDSPFGLL 713

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           + + +   KGI++QRYKGLGEMN  QLWETT+ PD R LL+V I DA++AD +FS+LMGD
Sbjct: 714 EHVLAEADKGINVQRYKGLGEMNPKQLWETTMEPDDRMLLQVDIEDAAEADSIFSKLMGD 773

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +VEPRR+FI+ N+L    LDI
Sbjct: 774 KVEPRRDFIERNALSVDELDI 794


>gi|262193330|ref|YP_003264539.1| DNA gyrase subunit beta [Haliangium ochraceum DSM 14365]
 gi|262076677|gb|ACY12646.1| DNA gyrase, B subunit [Haliangium ochraceum DSM 14365]
          Length = 821

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/826 (46%), Positives = 531/826 (64%), Gaps = 28/826 (3%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D         + YDADSI +LKGL+AV+KRP MYIGDTD  SGLHHM++EV+DNA+DE
Sbjct: 1   MADPTVTPANDATEYDADSITVLKGLEAVRKRPGMYIGDTDDGSGLHHMVHEVVDNAVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L GY D + +T++ D S TV DNGRGIP  +HK+EG  AAE++MT LHAGGKFNQ SYK
Sbjct: 61  ALAGYCDRVDITIHSDNSITVEDNGRGIPVAVHKDEGRPAAELVMTVLHAGGKFNQNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL I+REG +Y   +  GI  + L  TG   +  GT++TF
Sbjct: 121 VSGGLHGVGVSVVNALSRTLKLEIRREGKVYFQEYRQGIPVSDLRSTG-TTDRRGTKITF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LP  ++F   +F++  L  R RELS+LNS + I++ D+R  E ++    Y+GG+ +FV+ 
Sbjct: 180 LPDPEVFKQTEFSFGALSQRFRELSYLNSGLTIAITDER--ESQQQVFCYEGGMASFVAD 237

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+ +K P+    +     R+ +++D+AM+WND Y E + CFTN I  KDGGTHL+G R  
Sbjct: 238 LNANKNPVT-EVVAFTDEREGVTVDIAMQWNDSYAEQINCFTNTIKNKDGGTHLTGFRQG 296

Query: 296 LTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           LTR + +Y  ++   K+ K +   G+D REG  +V+S+K+ DP+FS+Q K+KLVSSEV  
Sbjct: 297 LTRTVNAYAAENKLLKELKGNNLSGEDLREGLVAVISVKVADPKFSNQPKDKLVSSEVAG 356

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V + VND L ++ E +P +A+ I++K + A+  RDAAR+AR++ +RKG L+  SLPGKL
Sbjct: 357 AVAAVVNDKLQSFFEHNPKDARSIIQKAVVAARARDAARKAREMVQRKGALEYTSLPGKL 416

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP K ELF+VEG+SAGGSAKQGR RE QAILPL+GKILNVERAR DKMLSSQEI
Sbjct: 417 ADCQERDPSKCELFIVEGESAGGSAKQGRDREFQAILPLKGKILNVERARMDKMLSSQEI 476

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            TLITALG GIG +  D+ +LRYH+I+IMTDADVDG+HIRTLLLTFFFRQ P +I N  L
Sbjct: 477 VTLITALGCGIGPEK-DMGRLRYHRIVIMTDADVDGSHIRTLLLTFFFRQYPEIIENNHL 535

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQS--------LSEEIELFCDSKGVISKND 586
           YI +PPL+ + RGKS  Y+K+E SLEDY+++           S +     D+   I+   
Sbjct: 536 YIAQPPLFKVKRGKSETYLKNEHSLEDYVLDLVSKELVVRGTSGDGAGGDDAGPEITGEA 595

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN------CESDQEINVSLASKLAN 640
           L  FI D  +  +         D       +  G F        E  + +   + + L  
Sbjct: 596 LHAFIKDTNEYRRHYTQLDKRGDSRLFASFIEGGEFTEQDLASEEGVERVRAGMRAYLEA 655

Query: 641 RLNFIAE-KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
               +A+ + E       +   +        V+   ++    + +   +     +  ++ 
Sbjct: 656 HHKDLADLEFELVRDEEHSVYALRAPLEGGNVRRDTIIGRDLLQTREVEEIARLTKSLDA 715

Query: 700 NYLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
                  L+  G+ I  +T    L + + ++GRKG+S+QRYKGLGEMN+ QLW+TT+ PD
Sbjct: 716 TLRGPYVLVHKGEDIGTVTTLDELAEAVEAVGRKGLSIQRYKGLGEMNSDQLWDTTMCPD 775

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            R+LL+V+I    +A D+FS LMGD VEPRR FI+ N+L    LDI
Sbjct: 776 QRTLLQVRIDAREEAADVFSVLMGDLVEPRRHFIENNALNVRNLDI 821


>gi|282889966|ref|ZP_06298501.1| hypothetical protein pah_c008o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500159|gb|EFB42443.1| hypothetical protein pah_c008o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 833

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/825 (42%), Positives = 509/825 (61%), Gaps = 30/825 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           I   +YDA SI +L+GL AV++RP MYIGDT   +GLH ++YE +DN IDE++ GY   I
Sbjct: 13  IAQKAYDASSITVLEGLQAVRERPGMYIGDT-ASNGLHQLVYEAVDNCIDEAMAGYCSAI 71

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEE------GISAAEVIMTRLHAGGKFNQKSYKVSG 118
            VTL+ DG+ T+ DNGRGIP   H++E       +SA EV+MT LHAGGKF++ +YKVSG
Sbjct: 72  YVTLHKDGAATIEDNGRGIPIQKHEKESLKQGRDVSALEVVMTILHAGGKFDKDTYKVSG 131

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS V ALS  L +++  +G+ YEM F  G +  PL + G+     GT++TF+P 
Sbjct: 132 GLHGVGVSCVCALSKKLVVQVYNQGSTYEMEFSKGKVVRPLSIVGTTT-KRGTKLTFIPD 190

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I +V  F+YD L  RLREL+FLN  + I   D+R  +  ++   Y GG+ +FVSYL+ 
Sbjct: 191 DTIMNVTTFDYDILAKRLRELAFLNKGINIYFHDERDADKDDVNFCYSGGLLSFVSYLNE 250

Query: 239 HKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +K+PL  +PI   GSR      I  +++M+WNDGY+EN+  + NNI  + GGTHL+G  +
Sbjct: 251 NKEPLFPTPIYFHGSRQGDDGPIEFEVSMQWNDGYNENIYSYVNNIATRSGGTHLTGFST 310

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y++     K DK S+ G+D REG T+V+S+K+ +P+F  QTK++L +S+V S
Sbjct: 311 ALTRVLNTYIKNHGLLKSDKYSITGEDMREGLTAVISVKVANPQFEGQTKQRLGNSDVGS 370

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           VV+  V + L  +L+E+P  ++ I  K + A+  R+AAR+AR+LT RK  LD A LPGKL
Sbjct: 371 VVQQIVGEELVIYLDENPAISRSIADKAMLAAQAREAARKARELTLRKSALDSARLPGKL 430

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DC E++P   E+++VEGDSAGGSAK GR R  QAILP+RGKILNVE+AR +K+L +QE+
Sbjct: 431 TDCQEKNPALCEIYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLGNQEV 490

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           GT++ ALG GIG+D F+I+KLRYHKIIIMTDADVDG+HIRTLLLTFF+R MP L+ N ++
Sbjct: 491 GTMVAALGCGIGRDGFNIDKLRYHKIIIMTDADVDGSHIRTLLLTFFYRHMPGLVENNYI 550

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLY +TR K+ +Y+  E+ ++DY++   LS+      D++  +    ++  I   
Sbjct: 551 YIAQPPLYRVTRKKTSRYIHSEKEMDDYMLELGLSDIKIKLKDTE--LDAERMQELIRTL 608

Query: 595 LKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           L+++  +          + F+      G         +  S  +        + +  E+ 
Sbjct: 609 LEVESFVSRIERKGVSFREFLASKNEEGRLPRFQVNLLKGSQFAYSIKEFEVLKQNDEEE 668

Query: 653 WHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC- 709
                    + I    I   ++       + I  +     +    R+      +   +  
Sbjct: 669 QQQRHKETLASIPESEITEEMRTFRPTRFNFIELYEDISLQGLVGRLNSFGFDLNHYLIA 728

Query: 710 ----------NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
                      G     +    +L  I   GRKGI +QRYKGLGEMNA QLWETT++P+ 
Sbjct: 729 DGHLLDIIEDGGKSTPFSTLGEVLAFIRENGRKGIEIQRYKGLGEMNADQLWETTMDPEK 788

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           R+LLRV + D   AD +F+ LMG+ V PRR FI++++L    LD+
Sbjct: 789 RTLLRVTLPDMVAADHMFTMLMGEAVPPRRAFIEQHALSVKNLDV 833


>gi|46578420|ref|YP_009228.1| DNA gyrase subunit B [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601056|ref|YP_965456.1| DNA gyrase, B subunit [Desulfovibrio vulgaris DP4]
 gi|46447831|gb|AAS94487.1| DNA gyrase, B subunit [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561285|gb|ABM27029.1| DNA gyrase subunit B [Desulfovibrio vulgaris DP4]
 gi|311232352|gb|ADP85206.1| DNA gyrase, B subunit [Desulfovibrio vulgaris RCH1]
          Length = 798

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/810 (45%), Positives = 496/810 (61%), Gaps = 19/810 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    N +Y ADSI IL+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MTTGTGN-NYTADSITILEGLSAVRKRPAMYIGSTDA-RGLHHLVYEVVDNSIDEAMAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              + V L++D S TVSDNGRGIP D+H +EG  A EV+MT+LHAGGKF+  +YKVSGGL
Sbjct: 59  CSKVVVKLHLDNSVTVSDNGRGIPVDMHPKEGRPAVEVVMTKLHAGGKFDNNAYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS WL++R+KR+G  Y   +  G+    L V G A    GT V F P  +
Sbjct: 119 HGVGVSCVNALSEWLEVRVKRDGQRYGQRYARGVPQEDLRVLG-ASEGHGTTVRFKPDEE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+Y+TL+ R  ELS+LN  ++I  ID+RS E    T F +GGI  FV  L+  +
Sbjct: 178 IFETNQFSYETLRKRFEELSYLNRGLEIEFIDERSGESH--TFFAEGGIRQFVKDLNSGE 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +    +  +G  D + +D A+++N GY ENVL F NNI  K+GGTHL+G ++ALTR I
Sbjct: 236 TGIHP-IVAGEGKTDGVVVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFKTALTRAI 294

Query: 301 TSYVEKSFGS--KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             YV+       K    ++ GDD REG T+V+S+K+P P+F  QTK KL +SE+  +V  
Sbjct: 295 NGYVKGQADLTKKMKGTALSGDDVREGLTAVVSVKLPQPQFEGQTKTKLGNSEIAGIVAG 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D L+   EE+P + ++I+ K +DA+  RDAARRA++L RRKG L   +LPGKLADC 
Sbjct: 355 IVYDRLNVHFEENPKDVRLIIDKAVDAARARDAARRAKELVRRKGALSDNALPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SELF+VEGDSAGGSAKQGR    QAILPLRGKILN ER RFDKML+++E+  LI
Sbjct: 415 SKDPALSELFIVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKALI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+G GIG+D  D +KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQ   LI +G+LYI +
Sbjct: 475 TAMGAGIGEDDTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQYQKLIESGYLYIAQ 534

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY     +  +++KD+  L ++L+ + +SE++E+           D+   +     + 
Sbjct: 535 PPLYRAHNSRMERFIKDDAELNNFLLTR-VSEDVEVRTPGGCSFKGTDIVRLMRSIETVA 593

Query: 599 KLIKDFYPNHDKT--FIEQAVISGVFNCESDQEIN-VSLASKLANRLNFIAEKSEKSWHG 655
             I+D          F+           E  ++ +   L   LA R   +  + E     
Sbjct: 594 ARIRDVETAGISRELFLGFLEYGERITPEWFEQHDGNGLRPWLAGRGYSMTAELESG--- 650

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKI 714
             +  D            +  +      S   +           E      +L   G+ +
Sbjct: 651 --DEGDRTFVVFENTNGHRTRIGAEFFGSRMYRSSWDALEAIRSECGGLSFTLDRKGETV 708

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                  L   +F   R+G+++QRYKGLGEMN  QLW TT+NP+ R+LL+V I DA +A 
Sbjct: 709 GEGDMFDLQRMVFEEARRGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLQVSIEDAEEAS 768

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D F +LMGD VEPRREFI  N+L    LDI
Sbjct: 769 DAFEQLMGDRVEPRREFIVRNALAVQELDI 798


>gi|298529211|ref|ZP_07016614.1| DNA gyrase, B subunit [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510647|gb|EFI34550.1| DNA gyrase, B subunit [Desulfonatronospira thiodismutans ASO3-1]
          Length = 800

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/803 (45%), Positives = 515/803 (64%), Gaps = 12/803 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              +  Y A SIQ+L+GL AV+KRP+MYIG TD   GL H++YEVLDN+IDE++ GY D 
Sbjct: 7   QENSGEYTAQSIQVLEGLTAVRKRPAMYIGSTD-VRGLQHLVYEVLDNSIDEAMAGYCDN 65

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + +T++MD S T+SDNGRGIP D H++E   A EV+MT LHAGGKF+  SYKVSGGLHGV
Sbjct: 66  VRITVHMDNSVTISDNGRGIPVDWHEKENRPALEVVMTVLHAGGKFDNASYKVSGGLHGV 125

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS +L++ ++REG  Y   F  GI    L   G +    GT + F P  +IFS
Sbjct: 126 GVSVVNALSEYLEVTVRREGEKYFQKFERGIPVTKLRHEGPSS-SRGTTIKFRPDEEIFS 184

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             DF+YDTL  R  EL++LNS ++I   D+R  +       + GG+ +F+   + +K   
Sbjct: 185 TLDFDYDTLSKRFEELAYLNSGLRIEFQDERYQKS--DVFQFDGGLLSFIK--NVNKDSG 240

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +   I   G   N+S++L +++  GY E++  F NNI   +GGTHL+GLRSALTR I +Y
Sbjct: 241 LHKVIYASGEVHNVSMELTLQYKTGYKEHIYSFANNIRTVEGGTHLNGLRSALTRAINTY 300

Query: 304 VEKSFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           ++ +    +  K+ + GDD REG TS++S+K+PDP+F  QTK KL +SE+   V     +
Sbjct: 301 IQHAQDLPRKLKQKLTGDDVREGLTSIISVKVPDPQFEGQTKTKLGNSEISGYVSGIAYE 360

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            ++ +L E+P +A+IIV+KV+DA+  R+AAR+A++L RRKG L   SLPGKLADC  ++P
Sbjct: 361 KITTFLNENPKDARIIVEKVVDAARAREAARKAKELVRRKGALSDYSLPGKLADCQSKNP 420

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SE+F+VEGDSAGGSAKQGR+ ++QAILPLRGKILNVE+ RF+K+L + EI  LITA+G
Sbjct: 421 SESEIFIVEGDSAGGSAKQGRNPKHQAILPLRGKILNVEKTRFEKILENNEIKALITAMG 480

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG    D++KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQ   LI NG+LYI +PPLY
Sbjct: 481 AGIGDKELDLSKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQFSQLIENGYLYIAQPPLY 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + +G   Q++ DE+++ D+L+N+    EI +  ++    +K+++   I + + +    +
Sbjct: 541 RVHKGNFEQFISDEKTMHDFLLNRVYD-EISIKTENGLEYTKDEMVELIKNLISLKDSFE 599

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
           D      K  + Q+++           +    +  ++       E + +     I     
Sbjct: 600 DAGNMGIKEELFQSLLEYGPRLHPVHFVYEDSSEFISFMSGRGFETTLEKEESEIEKRYF 659

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIKITGPCS 721
           LV       +    +      S   K       + +  N      ++   D I++ G   
Sbjct: 660 LV--FTDRNEHSTRIGIEFFNSGLYKKAHQVQQQILHNNPGLGFEILSQKDTIQVKGIFP 717

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           LLD +F +  KGI++QRYKGLGEMN  QLW TT++PD R++L+V + DA  ADDLFSRLM
Sbjct: 718 LLDKVFELAHKGINIQRYKGLGEMNPEQLWSTTMDPDKRTMLQVNVEDAELADDLFSRLM 777

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GD+VEPRREFI++N+L  A LDI
Sbjct: 778 GDKVEPRREFIEKNALEVADLDI 800


>gi|114776948|ref|ZP_01451991.1| DNA gyrase, B subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553034|gb|EAU55465.1| DNA gyrase, B subunit [Mariprofundus ferrooxydans PV-1]
          Length = 774

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/777 (51%), Positives = 523/777 (67%), Gaps = 11/777 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+ D I V ++ D S TV DNGRGIP  +H EE  S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCDKIEVIIHSDDSVTVRDNGRGIPVGMHDEEQCS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG+++   ++ G+
Sbjct: 61  AAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSESLELVIRREGHVHYQKYLMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL V G A   +GTEV FLPS +IFS ++ ++D L  RLRELSFLNS V I ++D+R
Sbjct: 121 PVEPLKVIGDAK-GSGTEVRFLPSLEIFSHRNMSFDILAARLRELSFLNSGVHIEVLDER 179

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           +    ++   Y+GGI AFV +L+R + PL    + +Q  R+++ ++LAM+W D Y ENV 
Sbjct: 180 TD--HKVVFEYEGGISAFVEHLNRTRAPLHSDCVSMQIDRNDVGVELAMQWTDSYQENVF 237

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQKDGG+HL+GLR ALTR + +Y   S   KK K S+ G+DCREG T+VLS+K+
Sbjct: 238 CFTNNIPQKDGGSHLAGLRGALTRCVNNYAAASGLLKKHKVSLTGEDCREGLTAVLSVKV 297

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTKEKLVSSEVR +VES VN+ L+ W EE+P EA  IV KV +A+  R+AAR+
Sbjct: 298 PDPKFSSQTKEKLVSSEVRPIVESVVNEKLAEWFEENPKEAMRIVGKVAEAATAREAARK 357

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARDLTRRKG LDI+SLPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+
Sbjct: 358 ARDLTRRKGALDISSLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKAQAILPLK 417

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFD+MLSSQEIGT+ITALGT IG+D FDI+KLRYHK++IMTDADVDG+HI 
Sbjct: 418 GKILNVEKARFDRMLSSQEIGTMITALGTSIGKDDFDISKLRYHKVVIMTDADVDGSHIL 477

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           TLLLTFF+RQMP LI  G+LYI +PPLY +TRGK  +Y+ D++ L ++L+      +   
Sbjct: 478 TLLLTFFYRQMPELIERGYLYIAQPPLYRVTRGKKSRYIADDDGLFEFLLEHGSDGKEYF 537

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
                  IS   L+  +    ++ +L+       D+  ++  + SG  + +  +      
Sbjct: 538 SSSDGQPISGERLQTSVRSIHRLQRLLSRLSQRIDRKVLKLLIESGKISMQMMRSRAELE 597

Query: 635 ASKLA-NRLNFIAEKSEK--SWHGSINNSD----ILVKRIARGVQEQFVLEGSSIFSFGS 687
               A +RL  +  + ++  +W  + N  D    I  +R   G      L+   + +   
Sbjct: 598 ERLQALDRLFELTTREDETLTWKVNENEEDGTCWIQFQRRDHGRVMISRLDKDLVGTAEF 657

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747
              +     I+        L        IT    L   I S GRKG+ +QRYKGLGEM+ 
Sbjct: 658 GEAQKLCASIQNLVDDGAHLSEGEKNWPITHFDELASIIESEGRKGLGIQRYKGLGEMDP 717

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            QLWETT++P  R   RV + D   AD+ FS LMGD VEPRR FIQ+N+L    LD+
Sbjct: 718 EQLWETTMDPVNRVFKRVMLEDVVNADETFSTLMGDAVEPRRRFIQDNALKVQNLDV 774


>gi|163783146|ref|ZP_02178140.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881480|gb|EDP74990.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 798

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/803 (41%), Positives = 489/803 (60%), Gaps = 17/803 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q+  Y A  I+ + GL+ V+ RP+MYIGD  GE GLHH+I+E+LDNA+DE++ GYA 
Sbjct: 11  QEVQDVDYGAQDIKAVTGLEHVRLRPAMYIGDV-GERGLHHLIWEILDNAVDEAMAGYAK 69

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            ++V ++ DGS TV D+GRGIP D+H E G  A E++ T L AGGKF +K+Y  SGGLHG
Sbjct: 70  NVSVIIHDDGSITVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKAYAYSGGLHG 129

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS WL + + R+G IY   +  G     L V G+     GT VTF P  DIF
Sbjct: 130 VGASVVNALSEWLLVEVYRDGKIYRQEYRRGEPVYELKVVGNTT-KRGTRVTFKPDPDIF 188

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
                 +D ++ RLREL++LN  V+  L D+RS +          GIE  V YL + K+P
Sbjct: 189 ETTRIKFDIVEKRLRELAYLNPEVRFYLKDERSDKEIVYKF--DRGIEELVEYLSQAKEP 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L +  +RIQG +D + +D+A R+   Y E +  F NN+   +GGTH++G RS LT+ +  
Sbjct: 247 LFKDIVRIQGDKDGVIVDIAFRYVRDYKELIDSFVNNVKTVEGGTHVTGFRSGLTKAVVR 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
             E    SK+ K    G+D REG  +V+S K+P+P+F  QTK KL +  V+++V+S V D
Sbjct: 307 LAEGLKLSKELKTMFSGEDVREGLVAVISCKVPEPQFEGQTKTKLGNQNVKTIVDSIVYD 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +  E+    K+IV+K ++A++ R+AA++A++L RRK  L+   LPGKLADCSE+DP
Sbjct: 367 YLTEYFNENKDVLKLIVEKAIEAALAREAAKKAKELVRRKSPLEDGILPGKLADCSEKDP 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           +K E+F+VEGDSAGGSAKQ R R  QAILPLRGKI+NVE+AR DK+L+++E+  +++ALG
Sbjct: 427 EKCEIFIVEGDSAGGSAKQARDRRFQAILPLRGKIINVEKARIDKVLANEEVKAIVSALG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG++  D++KLRYHKII+MTDAD+DG+HIRTLLLTFF+R MP LI NG++YI  PPLY
Sbjct: 487 CGIGEEL-DLSKLRYHKIILMTDADIDGSHIRTLLLTFFYRFMPQLIENGYVYIALPPLY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + +G+   YVKD+  LE +L                      +L   + +  + ++  +
Sbjct: 546 KLKKGRKEMYVKDDRELEHFLQELVKEHSYIKDS-VGREFRGEELGKLLRNLREYEESYR 604

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
               N  +  +   +   V   +      V    ++         + +  +       DI
Sbjct: 605 ALIKNKGEDIVNFLLAHRVVEEDLRSANRVKEIVRIMGE-ELTDYRVDTRYDEFEGAYDI 663

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITGPCS 721
           ++     G   + +++   + S   K        +E  +L +  ++  +    K+     
Sbjct: 664 ILYDDRLG--TKVIVDADFLSSLSYKQV------LEGIHLHLPVVVGYDSKTRKVKNLKE 715

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           + DT+  + + GI +QRYKGLGEMN  QLWETT++P TR L+RV + DA +AD +F+ LM
Sbjct: 716 VYDTVMELVKSGIEIQRYKGLGEMNPQQLWETTMDPKTRRLMRVTVEDAVEADRIFTILM 775

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           G++VEPRREFI+  +     LD+
Sbjct: 776 GEQVEPRREFIETYAKEVKNLDV 798


>gi|329942857|ref|ZP_08291636.1| DNA gyrase, B subunit [Chlamydophila psittaci Cal10]
 gi|332287450|ref|YP_004422351.1| DNA gyrase subunit B [Chlamydophila psittaci 6BC]
 gi|313848029|emb|CBY17027.1| DNA gyrase subunit B [Chlamydophila psittaci RD1]
 gi|325506975|gb|ADZ18613.1| DNA gyrase subunit B [Chlamydophila psittaci 6BC]
 gi|328815117|gb|EGF85106.1| DNA gyrase, B subunit [Chlamydophila psittaci Cal10]
 gi|328914698|gb|AEB55531.1| DNA gyrase, B subunit [Chlamydophila psittaci 6BC]
          Length = 806

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/819 (44%), Positives = 516/819 (63%), Gaps = 33/819 (4%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + +  +YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY   
Sbjct: 2   DAKEKNYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEE------GISAAEVIMTRLHAGGKFNQKSYKVS 117
           I V +  DG  T+SDNGRGIP   H++E       +SA EV++T LHAGGKF++ SYKVS
Sbjct: 61  IHVRILEDGGITISDNGRGIPIQTHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNAL+  L   + ++   Y+M F  G+    L + G+     GTE+TF P
Sbjct: 121 GGLHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTGLQLLGATDKQ-GTEITFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            ++IFS   F+   L  RLREL+FLN  + I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DNEIFSSCVFDRSILIKRLRELAFLNRGITIIFEDDRDVSFDKVIFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L   PI I GSR     +I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKESLFPEPIYISGSRTGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + +Y++    +K DK S+ G+D REG T+V+S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + +E+P  AK+IV+KV  A+  R+AA++AR+LT RK  LD A LPGK
Sbjct: 360 SVSQQITGEALTIFFDENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPAKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IGT+I ALG GIG D+F++ KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGTIIAALGCGIGSDNFNLGKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++DYL+   + +   +F +    IS   L +F+  
Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLGVCDSKLVFKNGDREISGEALDSFVKL 599

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L I+  I                       E  +    +L   L        ++  + +
Sbjct: 600 ILNIENFIVALEKKAVPF------------SEFLEMRKETLGYPLYYSPPQSGKQGGRYF 647

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LICNG 711
           + S    + +  R      +   L  +SIF+   +  R +   I        S  +I N 
Sbjct: 648 YSSEEKEEEMASREDADSMKVIELYKTSIFAEIQEELRDYGLDIRHYLNPKDSEMVITNE 707

Query: 712 DK----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           D             ++D + ++GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV +
Sbjct: 708 DSKTLPYTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSL 767

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
            DA +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 768 KDAVEADHIFTMLMGEEVPPRREFIENHALSVKMNNLDI 806


>gi|124516516|gb|EAY58024.1| DNA gyrase, B subunit [Leptospirillum rubarum]
 gi|206603407|gb|EDZ39887.1| DNA gyrase, B subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 818

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/824 (41%), Positives = 502/824 (60%), Gaps = 27/824 (3%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS        Y A+ I++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L G
Sbjct: 1   MSSGEPVEEEYTAEHIRVLEGLEAVRVRPGMYIGST-GIDGLHHLVYELVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I +T++ D S TV+DNGRGIPT +H E+  SAAEV++T LHAGGKFN   YKVSGG
Sbjct: 60  HCSEIHITIHPDRSVTVADNGRGIPTGMHAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I + G I+  ++  G  D PL V G      GT + F P  
Sbjct: 120 LHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLAVFGETT-QRGTIIRFWPDM 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            I     F++DTL HR REL+FLN  + I L D+ +   RE T  ++GG+++FVS+L+ +
Sbjct: 179 TIMETDQFSFDTLAHRFRELAFLNPVLTIHLKDEET--LREETFHFEGGVQSFVSFLNEN 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           KK L       +   D    ++A ++ +   +E VL F NNI  ++GGTH+ G R+A+T+
Sbjct: 237 KKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITK 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  ++ +   +K ++    G+D REG T ++S+++P P+F  QTK KL SS V   +ES
Sbjct: 297 TINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMES 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
           F+++ L    EE PL AK I +K +  +  R+AAR+A+DL +RK VL+ ++LPGKLADC 
Sbjct: 355 FLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FDKMLSSQEIGTL 477
           E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE++R  +K +++ E+  L
Sbjct: 415 ESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRAL 474

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITA+G G+G++ F   KLRYHKIIIMTDADVDGAHIRTLLLTFFFR M  LI   F+YI 
Sbjct: 475 ITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIA 534

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY ++ G+  +Y+ ++E+L+ Y++  + ++ +     +   +++ +    +   +  
Sbjct: 535 QPPLYKVSYGRQERYLLNDEALQAYILELACADWMFYDEQAGHWLAREEAVAKLLVLVHF 594

Query: 598 DKLIKDFYPNHDKTFIEQAV---ISGVFNCESDQEINVSLASKLANRL------NFIAEK 648
           ++ ++          + + +            ++E    L S L            +A +
Sbjct: 595 EEQVRAHAQRFGNEMLLRLIGMFPETGIELLKNEEAAQRLVSFLTGEYPGWVDGGRLAGQ 654

Query: 649 SEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            E+       H       I     + G + + VL+   +    +  + +   R       
Sbjct: 655 VERDPGMSESHPEEEWFRIRFFTESLGYESRLVLDHYLLAQLLAGKRSLKLLRQSGLLFP 714

Query: 704 ILSLICN---GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              ++     G++I+   P  LL  + S  R+ +S+QRYKGLGEMN  QLWETT++P  R
Sbjct: 715 GGFVLRRGAEGEEIRFRSPRELLSFLESPVRQKLSIQRYKGLGEMNPEQLWETTMDPSRR 774

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +LL+V I D  +AD +F+ LMG++V PRREFI++++L    LDI
Sbjct: 775 TLLKVSIPDYVEADRVFTTLMGEQVAPRREFIEKHALDVANLDI 818


>gi|303326105|ref|ZP_07356548.1| DNA gyrase, B subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864021|gb|EFL86952.1| DNA gyrase, B subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 801

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/807 (44%), Positives = 504/807 (62%), Gaps = 15/807 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   N  Y+A SI IL+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ GY  
Sbjct: 4   ETSGNGGYNASSITILEGLSAVRKRPAMYIGSTD-GRGLHHLVYEVVDNSIDEAMAGYCS 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            ITV L+ D S TV D+GRGIP D+H +EG+ A +V+MT+LHAGGKF+  SYKVSGGLHG
Sbjct: 63  RITVILHADNSVTVRDDGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNTSYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVS VNALS  L + ++R+G  Y   +  G+  + L V G      GT V F P  +IF
Sbjct: 123 VGVSCVNALSEELTVTVRRDGKRYRQHYARGVPQDQLAVIGEDVEGHGTTVRFRPDEEIF 182

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            V +F+Y+TL+ R  EL++LN  + I  ID+R  E        +GGI  FV+ L+  ++ 
Sbjct: 183 EVLEFSYETLKKRFEELAYLNKGLIIECIDERIGETH--VFHAEGGIRQFVADLNSGEQG 240

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +    I  +G  D++++D A+++N GY EN+L F NNI  K+GGTHL G R+ALTR I  
Sbjct: 241 IHS-IIFGEGMVDSVTVDFALQYNAGYKENILTFANNIRTKEGGTHLVGFRTALTRAING 299

Query: 303 YVEKSFGSKK--DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y++      K     ++ GDD REG T+V+S+K+P P+F  QTK KL +SEV  +V   V
Sbjct: 300 YIKGQQDLVKKLKNTALSGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGLVAGVV 359

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L+ + EE+P + ++I++K +DA+  RDAARRA++L RRKG L   +LPGKLADC  +
Sbjct: 360 YDRLNVYFEENPKDIRLIIEKAVDAARARDAARRAKELVRRKGALSDNALPGKLADCQSK 419

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SELF+VEGDSAGGSAKQGR+ +NQAILPLRGKILN ER RFD+ML+++E+  LITA
Sbjct: 420 DPVESELFIVEGDSAGGSAKQGRNPKNQAILPLRGKILNTERTRFDRMLANKEVKALITA 479

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G GI QD  D+ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ   ++  GF+YI +PP
Sbjct: 480 MGAGI-QDDTDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQYQEMVEKGFVYIAQPP 538

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY +   +  +++KD+  L D+L+++ +SE++ +   +    S   L + +    K++  
Sbjct: 539 LYRVHNSRMEKFIKDDAELNDFLLSR-VSEDVSIVARNGKTFSGKALISLMRRIEKLEMR 597

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
           + D         +  A+ +     E    ++ +    + L      +  + E+S     +
Sbjct: 598 VTDAEGAGTPRDLFLALTTYPVRAEASMLEDQDSEFTAWLNEHGYLLTLERERS---EED 654

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKIT 717
           + + L                    S   +   ++F+   EE      +L     +    
Sbjct: 655 DEERLFAVFESTGSHHTRRGMEFFASRLYRQTWQLFTELREECGGLAFTLRRKDGEAAAD 714

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
               L+  +    R+GI++QRYKGLGEMN  QLW TT+NPD R LL+V + DA+ A D F
Sbjct: 715 DVFQLMQMVLDEARRGINIQRYKGLGEMNPDQLWVTTMNPDNRILLQVSVEDATSASDAF 774

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
             LMGD VEPRR+FI+ N+L    LDI
Sbjct: 775 EELMGDRVEPRRDFIERNALAVQELDI 801


>gi|225848548|ref|YP_002728711.1| DNA gyrase subunit beta [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644043|gb|ACN99093.1| DNA gyrase, B subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 809

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 504/820 (61%), Gaps = 28/820 (3%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M +   +N  Y A++IQ + GLD V+ RP+MYIGD  GE GLHH+++E+LDNA+DE++ G
Sbjct: 1   MEEIKNENIEYSAEAIQAVTGLDHVRARPAMYIGDI-GERGLHHLVWEILDNAVDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           YA  ITV ++ DGS TV D+GRGIP D+H E  I A E++ T L AGGKF++K+Y+ SGG
Sbjct: 60  YAKNITVIIHQDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALSSWL + + R G IY   +  G    PL V G      GT+VTF P  
Sbjct: 120 LHGVGASVVNALSSWLVVEVYRNGKIYRQEYSYGKPVYPLKVVGDTT-KRGTKVTFKPDD 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF      +D +Q R+REL+FLN  V+  +ID+R  +  +   +++ GI  FV  L++ 
Sbjct: 179 SIFETTTIKFDIIQKRVRELAFLNPGVRFVVIDER--KDIKEEFYFENGIVDFVRVLNQA 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+PL    I ++G +D + +++A ++   Y+E +  F NNI   +GGTH+SG R+ALTR 
Sbjct: 237 KEPLFDEVIYVKGEKDGVLVEVAFQYTKSYNEVIESFVNNIKTVEGGTHVSGFRAALTRS 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +   +      K+ K  V GDD REG T+V+S+K+P+P+F  QTK KL + +V+ +VES 
Sbjct: 297 MNKTLSGMKLPKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D L  + E++   A  I +K ++A++ R+AAR+A++++RRK  L+ +SLPGKLADCSE
Sbjct: 357 VGDYLLEYFEKNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP+  ELF+VEG+SAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS++EI  ++ 
Sbjct: 417 SDPQLCELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVN 476

Query: 480 ALGTGIG------------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           A+GTGIG             + FD++KLRYHKII+M DADVDG+HI TLLLT F+R  P 
Sbjct: 477 AIGTGIGLPIKSEDEEKKEDEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRFFPQ 536

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I NG LYI +PPLY + +G+S  YVKD+E L   +    +    +         SK+ L
Sbjct: 537 IIENGHLYIAQPPLYKLKKGRSEIYVKDDEELSKIV----IDFATDEIAIEGKNFSKSQL 592

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
           ++    + +   L +  Y   DK  I+  +     N   D   N     ++   L     
Sbjct: 593 KDIAKLSKEYKNLKESLYKRKDKVVIDTLL---SLNLTEDDIRNKGKVKEVVEFLRQKLP 649

Query: 648 KSEKSW--HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT-I 704
             E  +  +   ++ +I ++R+ R  +    ++   + S+     +   N ++       
Sbjct: 650 SYEIYYKFNPEESDYEIFIERVERFSKVVNKVDIDFLSSYAYLKVKEIENHLKSMLGELP 709

Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
           + +      IK+     L D IF  G  G  +QRYKGLGEMN  QLWETT+NP TR LL+
Sbjct: 710 VEISYKQKSIKVEDLDDLYDVIFEAGMSGCEVQRYKGLGEMNPEQLWETTMNPKTRRLLQ 769

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           V I DA+ AD++FS LMG++VEPRREFI + +     LDI
Sbjct: 770 VTIEDAALADEVFSILMGEKVEPRREFIMKYAKEVRNLDI 809


>gi|206603337|gb|EDZ39817.1| DNA gyrase, B subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 818

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/824 (41%), Positives = 501/824 (60%), Gaps = 27/824 (3%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS        Y A+ I++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L G
Sbjct: 1   MSSGEPVEEEYTAEHIRVLEGLEAVRVRPGMYIGST-GIDGLHHLVYELVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I VT++ D S TV+DNGRGIPT +H E+  SAAEV++T LHAGGKFN   YKVSGG
Sbjct: 60  HCSEIHVTIHPDRSVTVADNGRGIPTGMHAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I + G I+  ++  G  D PL V G      GT + F P  
Sbjct: 120 LHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGAPDAPLAVFGETA-QRGTIIRFWPDM 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            I     F++DTL HR REL+FLN  + I L ++ +   RE T  ++GG+++FVS+L+ +
Sbjct: 179 TIMETDQFSFDTLSHRFRELAFLNPVLTIHLKEEET--LREETFHFEGGVQSFVSFLNEN 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           KK L       +   D    ++A ++ +   +E VL F NNI  ++GGTH+ G R+A+T+
Sbjct: 237 KKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITK 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  ++ +   +K ++    G+D REG T ++S+++P P+F  QTK KL SS V   +ES
Sbjct: 297 TINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMES 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
           F+++ L    EE PL AK I +K +  +  R+AAR+A+DL +RK VL+ ++LPGKLADC 
Sbjct: 355 FLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FDKMLSSQEIGTL 477
           E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE++R  +K +++ E+  L
Sbjct: 415 ESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRAL 474

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITA+G G+G++ F   KLRYHKIIIMTDADVDGAHIRTLLLTFFFR M  LI   F+YI 
Sbjct: 475 ITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIA 534

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY ++ G+  +Y+ ++E+L+ Y++  + ++ +     +   +++ +    +   +  
Sbjct: 535 QPPLYKVSYGRQERYLLNDEALQAYILELACADWMFYDEQAGHWLAREEAVAKLLVLVHF 594

Query: 598 DKLIKDFYPNHDKTFIEQAV---ISGVFNCESDQEINVSLASKLA---------NRLNFI 645
           ++ ++          + + +             +E    L S L           RL+  
Sbjct: 595 EEQVRAHAQRFGNEMLLRLIGMFTETGIEVLKSEEAARRLVSFLTGEYPGWVAGGRLDGQ 654

Query: 646 AEKSEK--SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            E+       H       I     + G + + VL+   +    +  + +   R       
Sbjct: 655 VERDPVMAETHPEEEWFRIRFFTESLGYESRLVLDHYLLAQLLAGKRSLRLLRQSGLLFP 714

Query: 704 ILSLICN---GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              ++     G++++   P  LL  + +  R+ +S+QRYKGLGEMN  QLWETT++P  R
Sbjct: 715 GGFVLKRGAEGEEVRFRSPRELLSFLETPVRQKLSIQRYKGLGEMNPEQLWETTMDPSRR 774

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +LL+V I D  +AD +F+ LMG++V PRREFI++++L    LDI
Sbjct: 775 TLLKVSIPDYVEADRVFTTLMGEQVAPRREFIEKHALDVANLDI 818


>gi|62185121|ref|YP_219906.1| DNA gyrase subunit B [Chlamydophila abortus S26/3]
 gi|62148188|emb|CAH63945.1| DNA gyrase subunit B [Chlamydophila abortus S26/3]
          Length = 806

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/819 (44%), Positives = 513/819 (62%), Gaps = 33/819 (4%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + +  +YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY   
Sbjct: 2   DAKEKNYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEE------GISAAEVIMTRLHAGGKFNQKSYKVS 117
           I V +  DG  T+SDNGRGIP   H++E       +SA EV++T LHAGGKF++ SYKVS
Sbjct: 61  IHVRILEDGGITISDNGRGIPIQTHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNAL+  L   + ++   Y+M F  G+    L   G+     GTE+TF P
Sbjct: 121 GGLHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTSLQCLGATNKQ-GTEITFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS   F+   L  RLREL+FLN  V I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DNKIFSSCVFDRSILIKRLRELAFLNRGVTIIFEDDRDVSFDKVVFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L   PI I GSR      I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKESLFPEPIYISGSRTGDDGEIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + +Y++    +K DK S+ G+D REG T+V+S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + +E+P  AK+IV KV  A+  R+AA++AR+LT RK  LD A LPGK
Sbjct: 360 SVSQQITGEALTIFFDENPQIAKMIVDKVFIAAQAREAAKKARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPAKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IGT+I ALG GIG D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++DYL+   + +   +F +    IS   L +F+  
Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLGICDSKLVFKNGDREISGEALDSFVKL 599

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L I+  I                       E  +    ++   L  R     ++  + +
Sbjct: 600 ILNIENFIVALEKKAVPF------------SEFLEMRKETVGYPLYYRPPQSGKQGGRYF 647

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LICNG 711
           + S    + +V        +   L  +SIF+   +  R +   I        S  +I N 
Sbjct: 648 YSSEEKEEEMVSGEDSDSTKVIELYKTSIFAEIQEELRNYGLDIRHYLNPKDSEMVITNE 707

Query: 712 D----KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           D             +++ + ++GRKGI +QRYKGLGEMNA QLW+ T+NP+ R+L+RV +
Sbjct: 708 DAKTLPYTCYTLKEVIEHLKALGRKGIEIQRYKGLGEMNADQLWDITMNPEQRTLVRVSL 767

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
            DA +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 768 KDAVEADHIFTMLMGEEVPPRREFIENHALSVKMNNLDI 806


>gi|15606321|ref|NP_213700.1| gyrase B [Aquifex aeolicus VF5]
 gi|4033398|sp|O67137|GYRB_AQUAE RecName: Full=DNA gyrase subunit B
 gi|2983522|gb|AAC07098.1| gyrase B [Aquifex aeolicus VF5]
          Length = 792

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/802 (41%), Positives = 489/802 (60%), Gaps = 15/802 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            +     Y A++I+ + GL+ V+ RP+MYIGD  GE GLHH+I+E+LDNA+DE++ GYA 
Sbjct: 5   QSQTPQEYTAEAIKAVSGLEHVRLRPAMYIGDI-GERGLHHLIWEILDNAVDEAVAGYAR 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I+VT++ D S TV D+GRGIP D+H E G  A E++ T L AGGKF +K Y  SGGLHG
Sbjct: 64  NISVTIHRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKVYTYSGGLHG 123

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS WL + + R+G IY M+F  G +  PL V G      GT+V+F P  +IF
Sbjct: 124 VGASVVNALSEWLIVEVYRDGKIYRMAFKRGEVVEPLHVVGETK-KRGTKVSFKPDPEIF 182

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +  +D ++ R+REL++LN  V+  L D+R  +          GIE  V YL+  K+P
Sbjct: 183 ETTEIKFDIVEKRVRELAYLNPEVKFELTDERLGKHLIYKF--DRGIEELVKYLNEGKEP 240

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L +  IRIQG ++ + +D+A ++   Y E +  F NNI   +GGTH++G RS L++ +  
Sbjct: 241 LFKDIIRIQGEKEGVIVDIAFQYVKDYKERIESFVNNIKTVEGGTHVTGFRSGLSKAVIR 300

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
             +    +K+ K+S  G+D REG T+V++ K+P+P+F  QTK KL +  V+ +VES   D
Sbjct: 301 MAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYD 360

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+++ E+     K IV+K ++A++ R+AA++A++L RRK  L+   LPGKLADCSE DP
Sbjct: 361 FLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSETDP 420

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+FLVEGDSAGGSAKQ R R  QAILPLRGKI+NVE+AR DK+LS+ EI  +++ALG
Sbjct: 421 SKCEIFLVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALG 480

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG+D  D+ KLRYHKII+MTDADVDG+HIRTLLLTFF+R MP L+  G++YI +PPLY
Sbjct: 481 CGIGEDL-DLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLY 539

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + +GK   Y+KD++  E +L+N+   +   +    K      +L   + D    +   +
Sbjct: 540 RVKKGKKEIYIKDDKEFEHFLLNEIREKGRLVDAREKE-FKGEELVRLLIDLKDYEDAYR 598

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
               +  +  +   +   V   +      V   + L         + +  ++      DI
Sbjct: 599 ALVKSKGENLVNFLLTHRVREEDLRNPARVKEITHLMEE-ELGDYRVDTKYNELEGAYDI 657

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           +      G +   +++ + + S   +           +    + +     K++I     +
Sbjct: 658 IFYDDKLGTKT--IIDVNFLSSLSYREV-----LEGIHLHLPVQVFFENKKVEINSLGEI 710

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
            D      R G+ +QRYKGLGEMN  QLWETT+NP TR L +VKI DA++AD +F+ LMG
Sbjct: 711 YDKFMDFARSGMEVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIEDAAEADRIFTILMG 770

Query: 783 DEVEPRREFIQENSLPSA-LDI 803
           ++VEPRREFI+  +     LD+
Sbjct: 771 EQVEPRREFIEAYAKEVKHLDV 792


>gi|89898309|ref|YP_515419.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56]
 gi|89331681|dbj|BAE81274.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56]
          Length = 806

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/819 (44%), Positives = 515/819 (62%), Gaps = 33/819 (4%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + +  SYDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY   
Sbjct: 2   DAKEKSYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEE------GISAAEVIMTRLHAGGKFNQKSYKVS 117
           I V +  DG  T+SDNGRGIP  +H++E       +SA EV++T LHAGGKF++ SYKVS
Sbjct: 61  IHVRILEDGGITISDNGRGIPIQVHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNAL+  L   + ++   Y+M F  GI    L   G+     GTE+TF P
Sbjct: 121 GGLHGVGVSCVNALAKKLVATVYKDKQTYQMEFSRGIPLTSLQFLGATDKQ-GTEITFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS   F+   L  RLREL+FLN  V I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DDKIFSSCIFDRSILIKRLRELAFLNRGVTIIFEDDRDVSFDKVVFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L   PI I G+R      I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKESLFPEPIYIAGTRTGDDGEIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + +Y++    +K DK S+ G+D REG T+V+S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + +E+P  AK+IV+KV  A+  R+AA++AR+LT RK  LD A LPGK
Sbjct: 360 SVAQQITGEMLTTFFDENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDHRFQAILPIRGKILNVEKARLQKIFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IGT+I ALG GIG D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++DYL+   + +   +F +S   I+   L NF+  
Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLGVEDSTLVFKNSGREINGEALDNFVKL 599

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L I+  I          F E   +    +             +   R  + +E+ E   
Sbjct: 600 ILNIENFIVALEKKAVP-FSEFLEMHKEVSGYPLYYCPPQSGKQ-GGRYFYSSEEKENEV 657

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LICNG 711
             + +   + V            L  +S+F+   +  R +   I        S  +I N 
Sbjct: 658 QLNEDVDSVKVV----------ELYKTSVFAEIQEELRDYGLDIRHYLNPKDSEMVITNE 707

Query: 712 DK----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           D             ++D + ++GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV +
Sbjct: 708 DSKTLPYTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSL 767

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
            DA +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 768 KDAVEADHVFTMLMGEEVPPRREFIENHALSVKMNNLDI 806


>gi|237756532|ref|ZP_04585059.1| DNA gyrase, B subunit [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691306|gb|EEP60387.1| DNA gyrase, B subunit [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 812

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/814 (43%), Positives = 506/814 (62%), Gaps = 25/814 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             N+ Y A++IQ + GLD V+ RP+MYIGD  GE GLHH+ +E++DNA+DE++ GYA  I
Sbjct: 9   QNNTEYSAEAIQAVTGLDHVRARPAMYIGDI-GERGLHHLAWEIVDNAVDEAMAGYAKNI 67

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TV L+ DGS TV D+GRGIP D+H E  I A E++ T L AGGKF++K+Y+ SGGLHGVG
Sbjct: 68  TVILHQDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGGLHGVG 127

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALS WL + + R G IY   +  G   +PL   G+     GT+VTF P   IF  
Sbjct: 128 ASVVNALSKWLVVEVYRNGKIYRQEYSYGKPVHPLKEVGTTT-KRGTKVTFKPDDSIFET 186

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F YDT+  R+REL+FLN  V+ ++ID+R  +  +   +Y+ GI  FV  L++ K PL 
Sbjct: 187 TTFKYDTIAKRIRELAFLNPGVKFTVIDER--KDIKEEFYYENGIIDFVRVLNQAKDPLF 244

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I I+G +D + +++A ++N  Y+E +  F NNI   +GGTH+SG R+ALT+ +   +
Sbjct: 245 PDVIYIKGEKDGVLVEVAFQYNTSYNETLESFVNNIKTVEGGTHVSGFRAALTKSMNKTL 304

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K+ K  V GDD REG T+V+S+K+P+P+F  QTK KL + +V+ +VES V D L
Sbjct: 305 AGMKLPKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESVVGDYL 364

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + +++   A  I +K ++A++ R+AAR+A++++RRK  L+ +SLPGKLADCSE +P+ 
Sbjct: 365 IDFFDKNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSEDNPEI 424

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELF+VEG+SAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS++EI  ++ A+GTG
Sbjct: 425 CELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVNAIGTG 484

Query: 485 IG------------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           IG            ++ FD++KLRYHKII+M DADVDG+HI TLLLT F+R  P +I NG
Sbjct: 485 IGLPIKSEDEENKTEEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRYFPQIIENG 544

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            LYI +PPLY + +G+S  YVKD+E L   +I  +  E           ++K +++    
Sbjct: 545 HLYIAQPPLYKLKKGRSEIYVKDDEELAKIVIEYASDEVSI----EGKNLNKLEIKEVAK 600

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE-SDQEINVSLASKLANRLNFIAEKSEK 651
            + +   L +  Y   DK  I++ +   +   +   +E    +  KL   L     +   
Sbjct: 601 LSREYKDLKQSIYKRKDKKVIDEILKLSLTEEDLRSEEKVKEIVEKLKEVLKEY--EVYY 658

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-N 710
            +     + DI V+R  R  +    ++   + S+     +     + E + T+  ++   
Sbjct: 659 KYDPEEADYDIFVERRERFSKTVNKIDVDFLSSYAYVRVKEVERILLEKFGTLPIVVNYK 718

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
              I +     L D I+  G  G  +QRYKGLGEMN  QLWETT+NP TR LL+V I DA
Sbjct: 719 DKSITVEDFDKLYDVIYEAGMTGCEIQRYKGLGEMNPEQLWETTMNPKTRRLLQVSIEDA 778

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + AD++FS LMG++VEPR+EFI + +     LDI
Sbjct: 779 ALADEIFSILMGEKVEPRKEFIMKYAKEVRNLDI 812


>gi|289549166|ref|YP_003474154.1| DNA gyrase subunit beta [Thermocrinis albus DSM 14484]
 gi|289182783|gb|ADC90027.1| DNA gyrase, B subunit [Thermocrinis albus DSM 14484]
          Length = 791

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/806 (42%), Positives = 503/806 (62%), Gaps = 18/806 (2%)

Query: 1   MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M +  +    Y A  I+ + GL  V+ RPSMYIGD  GE GLHH+I+E+LDNA+DE + G
Sbjct: 1   MKEKRVLQEEYQAQDIKAVTGLQHVRLRPSMYIGDV-GERGLHHLIWEILDNAVDEHMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           YA  ITVT++ D S +V D+GRGIP D+H E GI A +++ T L AGGKF++K Y+ SGG
Sbjct: 60  YASHITVTIHADMSVSVEDDGRGIPVDIHPETGIPAVQMVFTVLGAGGKFDKKVYRYSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS WL + + R+GNIY   ++ G    P+ + G      GT+VTF P  
Sbjct: 120 LHGVGASVVNALSEWLVVEVYRDGNIYRQEYVRGEPTTPVQIVGKT-RKRGTKVTFKPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF      +D ++ R+REL++LN +    L+D+R+ +        + GIE  V YL R 
Sbjct: 179 EIFETTKIKFDIVEKRIRELAYLNPNCTFRLVDERTGKDLIYRF--EKGIEELVLYLARG 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+PL++  IR+ G  + + +D+A  +   Y E V  F NNI   +GGTH++G RS LT+ 
Sbjct: 237 KEPLIKEVIRVGGEHEGVIVDIAFTYTKDYKEVVESFVNNIKTLEGGTHVTGFRSGLTKA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +   +      K+ K ++ G+D REG  +V+S K+PDP+F  QTK KL +  V+S+VES 
Sbjct: 297 VMRLLPNIKLQKELKETITGEDLREGLVAVVSCKVPDPQFEGQTKTKLGNQNVKSIVESV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + LS++ +++    ++IV+K ++A++ R+AA++A++L RR+  L+  +LPGKLADCSE
Sbjct: 357 VYEQLSSYFDKNRDVLRVIVEKAIEAALAREAAKKAKELVRRRSPLEDTTLPGKLADCSE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP+K ELF+VEG+SAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS++EI  +++
Sbjct: 417 KDPEKCELFIVEGESAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKVLSNEEIKAIVS 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ++G GIG+D  D++KLRYH+II+MTDADVDG+HIRTLLLTFF+R MP L+  G+LYI +P
Sbjct: 477 SIGCGIGEDM-DLSKLRYHRIILMTDADVDGSHIRTLLLTFFYRYMPKLVEGGYLYIAQP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY   +GK++ Y+KD+  LE  L+   + +E  +       +    L  F+    ++++
Sbjct: 536 PLYRAKKGKTVVYLKDDRELEQLLME-DIKKEGYVRDKEGLELRGEKLMEFLKTIREVEE 594

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE-SDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
             +       +  ++  +       +  ++E   S+A KLA  L  +  K E  +     
Sbjct: 595 GYRALVKKKGQEVVDALMKVKPHEKDLREEEKARSVAEKLATLLPDM--KLELRFDEDEG 652

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             +IL+     G  ++ ++    + S   K                L++     +  +  
Sbjct: 653 AFEILLSDERIG--KRVLINVDLLSSLTYKNL-----LEGVGLTPPLTVGVGKREKTLED 705

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             SL   I  + ++   +QRYKGLGEMN  QLWETT+NP TR LLRV I DA++AD +FS
Sbjct: 706 LFSLYRDILDLAKENWEIQRYKGLGEMNPEQLWETTMNPATRRLLRVTIEDAAEADRIFS 765

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMG+EVEPRREFI+  +     LD+
Sbjct: 766 ILMGEEVEPRREFIEAYAREVRNLDV 791


>gi|222823049|ref|YP_002574622.1| DNA gyrase, subunit B [Campylobacter lari RM2100]
 gi|222538270|gb|ACM63371.1| DNA gyrase, subunit B [Campylobacter lari RM2100]
          Length = 772

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/806 (43%), Positives = 493/806 (61%), Gaps = 42/806 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +N +Y+A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I
Sbjct: 2   QENQNYNAGNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGFCDTI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +  +GSC VSDNGRGIP  +H  E +    V++T LHAGGKF++ +YKVSGGLHGVG
Sbjct: 61  NVEITTEGSCIVSDNGRGIPVGMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L   + R+G IY   F  G + +     G     TGT + F P   IF +
Sbjct: 121 VSVVNALSKKLVATVHRDGEIYRQEFSEGKVTSDFETIG-TSKKTGTIIEFWPDDQIFEI 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +
Sbjct: 180 TNFDYEILAKRFRELAYLNPKITINFKDNRIGKA--ESFHFEGGISQFVT--DLNKKQAL 235

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+
Sbjct: 236 TKAIFFNVDEEDVNVEVALLYNDSYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYI 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL SS VR +V     + L
Sbjct: 296 EANASAREKDSKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSKASFEYL 355

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K    + +LPGKLADC  +DP +
Sbjct: 356 TKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKETSSVGTLPGKLADCQSKDPSE 415

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G G
Sbjct: 416 SEIYLVEGDSAGGSAKQGRERTFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCG 475

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D FDI KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY  
Sbjct: 476 IG-DEFDIEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYRY 534

Query: 545 TR-GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            +  K   Y+KDE++L DYLI   +         +   I  NDL++F+        ++K+
Sbjct: 535 KKGQKKEIYLKDEKALNDYLIETGIE------SSNYEGIGLNDLKDFLKIVAAYKNVLKE 588

Query: 604 FYPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
                +     +  IE        N E  + +   L  +  N LN    +SE   +    
Sbjct: 589 LEKRFNVISVIRYLIENPDFIKASNEELFKVVKEFLEKQNHNILNSYINESEIRLYVQTE 648

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           N             E+ ++      +   +       +I++  L                
Sbjct: 649 NG-----------LEELIINDDLFTNPLYEEANYIYQKIKDRDLKFD-----------KD 686

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              +LD +    +KG  +QRYKGLGEMN  QLWETT++P+ R LL++ I DA +AD+ F+
Sbjct: 687 ILEILDDVEKNAKKGAYIQRYKGLGEMNPDQLWETTMDPNNRRLLKITIEDAQRADETFN 746

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
             MGD+VEPRRE+IQ ++     LD+
Sbjct: 747 LFMGDDVEPRREYIQAHAKDVKHLDV 772


>gi|189485008|ref|YP_001955949.1| DNA gyrase subunit B [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170286967|dbj|BAG13488.1| DNA gyrase subunit B [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 830

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/825 (44%), Positives = 515/825 (62%), Gaps = 27/825 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++ +   Y A +IQIL+GL+AV+KRP+MYIG T G  GLHH++YEV+DN+IDE L GY  
Sbjct: 9   ESSEKDGYSASNIQILEGLEAVRKRPAMYIGST-GSQGLHHLVYEVVDNSIDEVLAGYCK 67

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEE---GISAAEVIMTRLHAGGKFNQKSYKVSGG 119
            I VT++ D S TV D+GRGIP D H +    G+SA E+++T+LHAGGKF++ SYKVSGG
Sbjct: 68  NIDVTVHSDNSITVLDDGRGIPVDPHPDPKFKGVSALEIVLTKLHAGGKFDKNSYKVSGG 127

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS  LK  + R G +Y  ++  G    P+  +G    + GT+VTF P  
Sbjct: 128 LHGVGVSCVNALSDLLKAEVYRNGKVYVQNYSKGKPLCPVKESGVTE-ERGTKVTFHPDP 186

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IFSV  +++DTL +RLREL+FLN+  +I + D+R  +   I   Y GGI+ FV YL+ +
Sbjct: 187 EIFSVMKYSFDTLANRLRELAFLNAGTRIRISDERDDDKEHI-FDYNGGIKTFVQYLNTN 245

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  + + PI     +D++ +++AM++ND Y+E +  F NNI   +GGTHLSG RSALTR 
Sbjct: 246 KNVINKDPIYFVKEKDDVYVEIAMQYNDSYNELIFTFVNNINTVEGGTHLSGFRSALTRS 305

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  Y++K+  SK     + G+D REG T+++SIK+ DP+F  QTK +L +SEV  +++S 
Sbjct: 306 VNEYIKKNEVSKIKDLKLSGEDVREGLTAIISIKVQDPQFEGQTKTRLGNSEVEGIMQSV 365

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D L+ +LEE+P  A  I+ K ++A+  R+AAR+AR+LTRRKG LD ASLPGKLADCSE
Sbjct: 366 VGDALTTFLEENPGIASQILDKAINAAEAREAARKARELTRRKGALDSASLPGKLADCSE 425

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP+K+ELF+VEGDSAGGSAKQGR R  QAILPL+GKILNVE++R  K+L++ EI TLIT
Sbjct: 426 RDPQKTELFIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKSRLTKILANDEIRTLIT 485

Query: 480 ALGTGIGQ--DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           A+G GIG+    F+INK+RYHKIIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++YI 
Sbjct: 486 AIGAGIGKEEQDFNINKVRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPQLLDRGYIYIA 545

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK---GVISKNDLRNFIDDA 594
           +PPLY + R K   Y+  EE L+ +L  Q+L                I    L   + + 
Sbjct: 546 QPPLYKVRRNKREMYLDSEEELDKFLFQQALDGLSMSLIRDGVEVKEIDYKSLHKIVANI 605

Query: 595 LKIDKLIKDFYPNHDKT-------------FIEQAVISGVFNCESDQEINVSLASKLANR 641
            ++D L+K  +                            V    SD+E        L  R
Sbjct: 606 SELDILLKKLWKKGVSWKEYLRFKKEGKLPLYRAMKDGSVKYIYSDKEWKEFKDPLLEKR 665

Query: 642 LNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
              +A + E         +D ++       +   V   +        +   +S    +  
Sbjct: 666 RELLASQGELDEITENLKTDEVMPEYKDLWELPRVDNLAEQLEEEGLHPEHYSETHAKPV 725

Query: 702 LTILSLICN--GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
             +        G+  ++     L++TI  +G KG ++QRYKGLGEMN  QLWETT++   
Sbjct: 726 YRLQDTEKKVQGEIYELYSTTELIETIRELGNKGATIQRYKGLGEMNPEQLWETTMDIKN 785

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           R LL++ + DA + D +F+ LMGD+VEPRR FIQ ++L    LDI
Sbjct: 786 RKLLQITLEDAIETDRVFTTLMGDQVEPRRLFIQTHALDVRNLDI 830


>gi|269303150|gb|ACZ33250.1| DNA gyrase, B subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 805

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/817 (44%), Positives = 511/817 (62%), Gaps = 30/817 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + +  +YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY   
Sbjct: 2   DPKEKNYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSR 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           I V +  DG   + DNGRGIP ++H+ E       +SA EV++T LHAGGKF++ SYKVS
Sbjct: 61  IDVRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS  L   + ++   Y+M F  GI   PL    SA +  GTE+ F P
Sbjct: 121 GGLHGVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLEYV-SASDRQGTEIVFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS   F+   L  RLREL+FLN  + I   D R     ++T FY+GGI++FVSYL+
Sbjct: 180 DPKIFSTCTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L   PI I G+R      I  + A++WN GY E V  + NNIP + GGTHL+G  
Sbjct: 240 QNKESLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHLTGFA 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I +Y++    +K +K ++ G+D REG T+V+S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVS 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +  V + L+ + EE+P  A++IV KV  A+  R+AA++AR+LT RK  LD A LPGK
Sbjct: 360 SVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IGT+I ALG GIG D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGTIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++ YL+    +E   LF  ++  +    L +FI+ 
Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTNESSILFKSTERELRGEALESFINV 599

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L ++  I          F E   +           +  +   +    L    EK E   
Sbjct: 600 ILDVESFINALEKKAIP-FSEFLEMYKEGIGYPLYYLAPATGMQGGRYLYSDEEKEEALA 658

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               +   I        ++   V     I +   +Y    S+ +         +I N D 
Sbjct: 659 QEETHKFKI--------IELYKVAVFVDIQNQLKEYGLDISSYL--IPQKNEIVIGNEDS 708

Query: 714 ----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                       +++ + ++GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + D
Sbjct: 709 PSCNYSCYTLEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIRVSLKD 768

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           A +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 769 AVEADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 805


>gi|317486106|ref|ZP_07944953.1| DNA gyrase subunit B [Bilophila wadsworthia 3_1_6]
 gi|316922629|gb|EFV43868.1| DNA gyrase subunit B [Bilophila wadsworthia 3_1_6]
          Length = 795

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/809 (43%), Positives = 497/809 (61%), Gaps = 20/809 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   ++Y ADSI IL+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MTANA--NAYTADSITILEGLQAVRKRPAMYIGSTDY-RGLHHLVYEVVDNSIDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V L+MD S TV DNGRGIP D+H +E + A +V+MT+LHAGGKF+  +YKVSGGL
Sbjct: 58  CTRIEVVLHMDNSVTVRDNGRGIPVDIHPKEKVPAVQVVMTKLHAGGKFDNSAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L++ ++R+G  ++  +  G+    L   G + +  GT V F P   
Sbjct: 118 HGVGVSCVNALSERLEVTVRRDGKRWKQVYSRGVPQEELQYIGES-DSHGTTVRFKPDET 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F+YDTL+ R  EL++LN  +QI   D+R+ E        +GGI  FV  L+  +
Sbjct: 177 IFETTEFSYDTLKKRFEELAYLNKGLQIECRDERTSEVH--LFHAEGGIHQFVKDLNSGE 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +       +G  D +S++ A+++N GY EN+  F NNI  K+GGTHL+G ++ALTR I
Sbjct: 235 VGIHAIVD-GEGVADGVSVEFAIQYNAGYKENMYTFANNIRTKEGGTHLAGFKTALTRAI 293

Query: 301 TSYVEKSFGS--KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +Y++       K   +++ GDD REG T+VLS+K+P P+F  QTK KL +SEV  +V  
Sbjct: 294 NNYIKSQPDLTKKMKGQALSGDDVREGLTAVLSVKLPQPQFEGQTKTKLGNSEVAGIVGG 353

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V   L  + +E+P +A++I+ K +DAS  RDAARRA++L RRKG L   +LPGKLADC 
Sbjct: 354 VVYGKLDTYFQENPKDARLIIDKAVDASRARDAARRAKELVRRKGALSDNALPGKLADCQ 413

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SELF+VEGDSAGGSAKQGR+   QAILPLRGKILN ER RFDKML+++E+  LI
Sbjct: 414 SKDPADSELFIVEGDSAGGSAKQGRNPNTQAILPLRGKILNTERTRFDKMLANKEVKALI 473

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+G GIG++  D +KLRYHKI+IMTDADVDGAHIRTLLLTFFFR    LI  G+LYI +
Sbjct: 474 TAMGAGIGEEDTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRNYAGLIDRGYLYIAQ 533

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY     +  +++KD+  L  +L+ + +S+++E+   +  +    +++  +     I 
Sbjct: 534 PPLYRAHNSRMEKFIKDDYELNAFLMQR-VSDDMEVEAPNGTLFRGEEIKALMGQIENIS 592

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK--SWHGS 656
             +     + +   I + +   + + E    +     +      +F+ E+  +  +   +
Sbjct: 593 HRV----RDAELAGINRDLFLALVDVE--DRVTPDCLTSGTRCYDFLKERGYELTTETEA 646

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI-EENYLTILSLICNGDKIK 715
             + D +   I      +  +      S          + I ++       L     +  
Sbjct: 647 HEDGDRVFALIENANGHRTRVSVEFFISKMYLNSWEALDAIRQKCGGLSFMLRNKEQEYA 706

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
            +    L        RKG+++QRYKGLGEMN  QLW TT+NP+ R+LLRV + DA  A D
Sbjct: 707 ASDIFDLHALTLEEARKGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLRVTVEDAEAASD 766

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            F +LMGD VEPRREFI+ N+L    LDI
Sbjct: 767 TFEQLMGDRVEPRREFIERNALTVRDLDI 795


>gi|305432569|ref|ZP_07401730.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter coli
           JV20]
 gi|304444280|gb|EFM36932.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter coli
           JV20]
          Length = 770

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/799 (44%), Positives = 499/799 (62%), Gaps = 32/799 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I +
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLIATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDTIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  R REL++LN  + I+  D R  +    +  ++GGI  FVS  D +KK  +  
Sbjct: 180 FDYDILAKRFRELAYLNPKITINFKDNRVGKS--ESFHFEGGISQFVS--DLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 PIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +V+S+K+P+P+F  QTK KL SS VR +V     + LS 
Sbjct: 296 NASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSKASFEYLSK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYRYKK 534

Query: 547 -GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
             K   Y+KDE++L DYLI   +         +   I  NDL++F+        ++ +  
Sbjct: 535 GQKKEIYLKDEKALNDYLIETGIE------SSNYEGIGLNDLKDFLKIVAAYRSVLNELK 588

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
              +   + + +I    N +  +E N  L   +   L    ++     +  IN ++I + 
Sbjct: 589 KRFNVISVIRYLIE---NPDFIKENNEELFKIVKAFLE---KEGHNILNHYINENEIRIY 642

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
                  E+ ++          +      N+I++  L+                  +LD 
Sbjct: 643 VQTENGLEELIINDDLFSHPLYEEANYIFNKIKDRDLSFE-----------KDILDILDE 691

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           +    +KG  +QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  MGDEV
Sbjct: 692 VEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFMGDEV 751

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR++IQ ++     LD+
Sbjct: 752 EPRRDYIQTHAKDVKHLDV 770


>gi|317155005|ref|YP_004123053.1| DNA gyrase subunit B [Desulfovibrio aespoeensis Aspo-2]
 gi|316945256|gb|ADU64307.1| DNA gyrase, B subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 797

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/807 (44%), Positives = 506/807 (62%), Gaps = 14/807 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN     Y A+SI  L+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MSDN----QYTAESITHLEGLAAVRKRPAMYIGSTD-IRGLHHLVYEVIDNSIDEAMAGY 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VTL+MD SCTV+DNGRGIP ++H +EGI A ++ MT LHAGGKF+  SYKVSGGL
Sbjct: 56  CDTIKVTLHMDNSCTVTDNGRGIPVEIHPKEGIPAVQMAMTMLHAGGKFDNDSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS +++  ++R G  Y M F  G + + L   G + + TGT   F P  D
Sbjct: 116 HGVGVSCVNALSEFMETTVRRNGKTYRMKFERGAVVHELEELGPS-DATGTTQRFRPDED 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF V  F+YDTL+ R REL++LNS ++I   D+RS +       + GGI  +V  L+  +
Sbjct: 175 IFEVNQFDYDTLRKRFRELAYLNSGLEIEFKDERSGDN--EKFKFDGGIRQYVKDLNSGQ 232

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +   +  +G  +N+ ++ A+++  GY EN   F NNI   +GGTHL+G ++ALTR I
Sbjct: 233 NV-IGEIVYGEGKSENMIVEFALQYTAGYKENTYTFANNIRTIEGGTHLAGYKTALTRAI 291

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +YV+     KK  + + GDD REG TSV+S+K+PDP+F  QTK KL +SE   +V   +
Sbjct: 292 NNYVQNGDLPKKLIKKLTGDDVREGLTSVISVKLPDPQFEGQTKTKLGNSEASGLVAGVI 351

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ + EE+P EA+ I++KV+DAS  R+AAR+ARDL RRKG L   SLPGKLADC  +
Sbjct: 352 YEKLNVFFEENPKEARFIIEKVVDASRAREAARKARDLVRRKGALSDNSLPGKLADCQSK 411

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
            P+ SE+F+VEGDSAGGSAKQGR  ++QAILPLRGKILNVE+ R DKML ++EI  +ITA
Sbjct: 412 RPEDSEIFIVEGDSAGGSAKQGRDPKHQAILPLRGKILNVEKTRMDKMLGNKEIRAMITA 471

Query: 481 LGTGIG--QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           LG GIG  +D  D +KLRYHK++IMTDADVDG+HIRTLLLTFFFRQ   LI  G LYI +
Sbjct: 472 LGIGIGHEEDEQDYDKLRYHKVVIMTDADVDGSHIRTLLLTFFFRQYEELITRGNLYIAQ 531

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY   +GK  +++KD+  LE +L+   +  ++ +   S     +  L   +     + 
Sbjct: 532 PPLYRAHKGKFEKFIKDDIELETFLME-KVGTDVIIKAQSGKRFIEKQLMEMMTSIRFVR 590

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
           +   +      +  + QA+++           +    +  A       +   ++ H +  
Sbjct: 591 QKFTEVETVGVEPGLFQALMNHDERISFTHFESHDHEAFKARFEALGYKAYIETEHDAEM 650

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKIT 717
           + D            +  L      S   K   + +++  +       +L+    +  ++
Sbjct: 651 DKDRTYVTFESSNGHRMRLAMEFFHSKLYKQAYKTYTDLKQACGGFDFALVLKDGEKPVS 710

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           G  +L D++    ++G  +QRYKGLGEMN  QLWETT++P+ R++L+V I DA+ A+D+F
Sbjct: 711 GIFALYDSVIEEAQRGWQIQRYKGLGEMNPEQLWETTMHPEKRTMLQVTIEDAAGANDIF 770

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
             LMGD VEPRR FI++N+L    LDI
Sbjct: 771 MDLMGDNVEPRRAFIEKNALAVQELDI 797


>gi|15835080|ref|NP_296839.1| DNA gyrase subunit B [Chlamydia muridarum Nigg]
 gi|270285247|ref|ZP_06194641.1| DNA gyrase subunit B [Chlamydia muridarum Nigg]
 gi|270289266|ref|ZP_06195568.1| DNA gyrase subunit B [Chlamydia muridarum Weiss]
 gi|301336643|ref|ZP_07224845.1| DNA gyrase subunit B [Chlamydia muridarum MopnTet14]
 gi|13627141|sp|Q9PKK3|GYRB_CHLMU RecName: Full=DNA gyrase subunit B
 gi|7190505|gb|AAF39313.1| DNA gyrase, subunit B [Chlamydia muridarum Nigg]
          Length = 804

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/815 (44%), Positives = 508/815 (62%), Gaps = 27/815 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + Q   YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+   
Sbjct: 2   DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           + V +  DG  +VSDNGRGIP  +H++E       ISA EV++T LHAGGKF++ SYKVS
Sbjct: 61  VVVRILEDGGISVSDNGRGIPVQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS      + ++G  Y M F  G     L V GS  +  GTE+ F P
Sbjct: 121 GGLHGVGVSCVNALSEKFIANVFKDGQAYSMEFSKGAPLTALQVLGST-DKRGTEILFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              +FS   F+   L  RLREL+FLN  + I   D R     ++T FY+GGI++FVSYL+
Sbjct: 180 DPTVFSTCVFDRAILMKRLRELAFLNRGITIIFEDDRDAGFDKVTFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L  +PI IQGS+     +I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKESLFPTPIYIQGSKRGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY++    +K DK S+ G+D REG  +++S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRAVNSYIKSHNLAKSDKLSLTGEDIREGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + EE+P  AK IV KV  A+  R+AA+RAR+LT RK  LD A LPGK
Sbjct: 360 SVAQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTIRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LVDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IG++I ALG GIG D+F+++KLRY ++IIMTDADVDG+HIRTLLLTFF+R M +LI NG 
Sbjct: 480 IGSIIAALGCGIGTDNFNLSKLRYKRVIIMTDADVDGSHIRTLLLTFFYRHMSALIENGC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L +F++ 
Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTRESRVVFDDTARELEGTALESFVNL 599

Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            L+++  I            F++     G +              +  N L    EK   
Sbjct: 600 ILEVESFIIALEKRAIPFSEFLD-MFRDGAYPLYYYP---PESGKQGGNYLYSNEEKEAA 655

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
                   + I+       + +    E          Y        +   +T+ +     
Sbjct: 656 VAANEEAAARII------ELYKASAFEEIQHNLNEYGYDIRHYLHPKGTGITVSTEDSKT 709

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
                     ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA 
Sbjct: 710 PNYTCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803
           +AD +F+ LMG+EV PRREFI+ ++L    S LDI
Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMSNLDI 804


>gi|57504599|ref|ZP_00370711.1| DNA gyrase, B subunit [Campylobacter coli RM2228]
 gi|57019494|gb|EAL56188.1| DNA gyrase, B subunit [Campylobacter coli RM2228]
          Length = 770

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/799 (44%), Positives = 499/799 (62%), Gaps = 32/799 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I +
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDTIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  R REL++LN  + I+  D R  +    +  ++GGI  FVS  D +KK  +  
Sbjct: 180 FDYDILAKRFRELAYLNPKITINFKDNRVGKS--ESFHFEGGISQFVS--DLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 PIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +V+S+K+P+P+F  QTK KL SS VR +V     + LS 
Sbjct: 296 NASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSKASFEYLSK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYRYKK 534

Query: 547 -GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
             K   Y+KDE++L DYLI   +         +   I  NDL++F+        ++ +  
Sbjct: 535 GQKKEIYLKDEKALNDYLIETGIE------SSNYEGIGLNDLKDFLKIVAAYRSVLNELK 588

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
              +   + + +I    N +  +E N  L   +   L    ++     +  IN ++I + 
Sbjct: 589 KRFNVISVIRYLIE---NPDFIKENNEELFKIVKAFLE---KEGHNILNHYINENEIRIY 642

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
                  E+ ++          +      N+I++  L+                  +LD 
Sbjct: 643 VQTENGLEELIINDDLFSHPLYEEANYIFNKIKDRDLSFE-----------KDILDILDE 691

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           +    +KG  +QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  MGDEV
Sbjct: 692 VEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFMGDEV 751

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR++IQ ++     LD+
Sbjct: 752 EPRRDYIQTHAKDVKHLDV 770


>gi|158520112|ref|YP_001527982.1| DNA gyrase, B subunit [Desulfococcus oleovorans Hxd3]
 gi|158508938|gb|ABW65905.1| DNA gyrase, B subunit [Desulfococcus oleovorans Hxd3]
          Length = 814

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/821 (42%), Positives = 511/821 (62%), Gaps = 25/821 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M       +Y+  SI +L+GL+ V+KRPSMYIG+ D E GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MKKEEIKEAYNESSINVLEGLEPVRKRPSMYIGNVDKE-GLHHLVYEVVDNSIDEAMAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D + +V DNGRGIP  +H++E + A EV++T+LHAGGKF+  +YKVSGGL
Sbjct: 60  CDFIHVIIHKDNTVSVVDNGRGIPVGMHEKEHVPAVEVVLTKLHAGGKFDNNNYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALSS+L++ + R+G IY+ +F  G   + L + G      GT++ F P + 
Sbjct: 120 HGVGISVVNALSSFLEVNVYRDGKIYKQTFSEGQKTSELEIIGDTT-QRGTKIIFKPDTT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           I +  +F++D L  RLREL+FLN+ V+I + D RS E      FY+GG+  FV YL+R  
Sbjct: 179 IMNTDNFSFDILTRRLRELAFLNNGVRIKIEDHRSDESA--EFFYEGGLATFVDYLNRAH 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L   PI I G ++++ I+ A+++ND Y E +  F NNI   +GG HL G + ALTR I
Sbjct: 237 AVLH-KPIYISGEKNDVQIEAAIQYNDSYSETMYSFANNINTVEGGFHLIGFKGALTRSI 295

Query: 301 TSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             Y     G    K    + GDD REG T+V+S+++ +P+F  QTK KL +SEV+  V+S
Sbjct: 296 NQYAASQGGGSSKKNGDKITGDDVREGLTAVISVRIKNPQFEGQTKTKLGNSEVKGYVDS 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + L+ +LEE+P   KII+KK  +A+  R+AA++ARD+ R +G L  +SLPGKLA+C 
Sbjct: 356 LVYEKLNIFLEENPSVGKIIIKKATEAARARNAAKKARDIARSQGSLLDSSLPGKLAECQ 415

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
              P + ELFLVEGDSAGGSAKQGR R  QAILPL+GKILN+E+ARFDK+L S+EI  +I
Sbjct: 416 SSIPAERELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNIEKARFDKILKSEEIKNII 475

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           T LGTG+G + ++I K++YHK+IIMTDADVDGAHIRTLLLTFFFRQM  LI  G LYI +
Sbjct: 476 TVLGTGVGSEEYNIEKIKYHKVIIMTDADVDGAHIRTLLLTFFFRQMQDLIKQGHLYIAQ 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPL+ + RGK   Y+  E  L+DY I    + E +     +  +  ++L  F+ +  +  
Sbjct: 536 PPLFKVGRGKKEVYIDSELLLKDYFIQN--ACEKKYVKTGEKKLQDHELYLFLCNLSEFI 593

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
             +         + + + +I      +S  +    +A+             +  ++    
Sbjct: 594 SEMAGLKRRGYNSKLIETLIRQNIREKSLLQDRDRVAALQQTLSENGFVVDDVLYNEEKE 653

Query: 659 NSDILVKRIARGVQEQFV------------LEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
             + LV       +E+ V            +  + I+S   +   + S +I    +   +
Sbjct: 654 MYEFLVTIPLHEDEEEAVTGSAKKDIKPVRIGRNLIYSNRYQNIVMLSEKIAPYNVPPFT 713

Query: 707 LICNG---DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
           +  +    ++ +      L   + ++G+KG+  QRYKGLGEMNA QLW+TT+ P+TR LL
Sbjct: 714 VYNSDTDQEEARFDTVKQLYQYMEALGKKGVVFQRYKGLGEMNADQLWQTTMEPETRKLL 773

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           +V I DA++AD +F+ LMGD VEPR++FIQEN+L    LDI
Sbjct: 774 KVTIDDAAEADAVFTLLMGDVVEPRKKFIQENALEVETLDI 814


>gi|330444523|ref|YP_004377509.1| DNA gyrase subunit B [Chlamydophila pecorum E58]
 gi|328807633|gb|AEB41806.1| DNA gyrase, B subunit [Chlamydophila pecorum E58]
          Length = 801

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/819 (44%), Positives = 515/819 (62%), Gaps = 38/819 (4%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +I+  +YDA +I +L+GL AV++RP MYIGD  G SGLHH++YEV+DN+IDE+L GY   
Sbjct: 2   DIEVKNYDASAITVLEGLQAVRERPGMYIGD-AGISGLHHLVYEVIDNSIDEALAGYCTE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           I V +  DG  T+SDNGRGIP ++HK E       ISA EV++T LHAGGKF++ SYKVS
Sbjct: 61  INVRILEDGGITISDNGRGIPVEIHKRESEKQGREISALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS  L   + +   IY+M F  G+ + PL   G+  N  GT +TF P
Sbjct: 121 GGLHGVGVSCVNALSEKLVATVCKGQQIYQMEFSRGVPETPLQRLGATENQ-GTTITFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFSV  F+   L  RLREL+FLN  ++I   D R     ++T FY+GGI++FV+YL+
Sbjct: 180 DPKIFSVCVFDRSILMKRLRELAFLNRGIRIHFEDDRDVSFDKVTFFYEGGIQSFVNYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L   PI I G R     +   + +++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKESLFPEPIYIFGVRPGDDGDAEFEASLQWNSGYSELIYSYVNNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + +Y++ +  +K +K S+ G+D REG T+V+S+K+P+P+F  QTK+KL +  V 
Sbjct: 300 TALTRVLNAYIKANNLAKNEKLSLTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNGSVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + +E+P  AK+IV+KV  A+  R+AA++AR+LT RK  LD A LPGK
Sbjct: 360 SVAQQVTGEVLTTFFDENPQIAKLIVEKVFIAAQAREAAKKARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEVYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IGT+I ALG GIG D+F++ KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGTIIAALGCGIGSDTFNLEKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E  ++DYL+   + E   +F D++  +S + L +F+  
Sbjct: 540 VYIAQPPLYKVSKKKEFRYILSENEMDDYLLTLGMGECRAVFTDTQRELSGDALDSFVKV 599

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L I+  I                           E+                ++S    
Sbjct: 600 ILSIESFITALEKK-------------AIPFSEFLEMYKDSLGYPLYYCTPNKKESGMYL 646

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT---ILSLICN 710
           +       IL +   + V+    L   S+F       + +   I    +     + ++ +
Sbjct: 647 YSEEEKDQILAREEVKIVE----LYKPSVFLEIQNQLQDYGMDIRNYLIPQTHPIQILSD 702

Query: 711 GDKI---KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
             KI          +++ + +IGRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV +
Sbjct: 703 DSKILPYTCYTLQEVINYLKTIGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIRVSL 762

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
            DA +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 763 KDAVEADHVFTMLMGEEVPPRREFIESHALSIRMNNLDI 801


>gi|42521654|ref|NP_967034.1| DNA gyrase subunit B [Bdellovibrio bacteriovorus HD100]
 gi|39574184|emb|CAE77688.1| DNA gyrase subunit B [Bdellovibrio bacteriovorus HD100]
          Length = 806

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/816 (44%), Positives = 521/816 (63%), Gaps = 23/816 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   +  SY ADSIQ+L+GL+AV+KRP MYIGDT    G HH++YE++DN++DE L GY
Sbjct: 1   MSAE-EQKSYSADSIQVLEGLEAVRKRPGMYIGDT-AFKGYHHLVYEIVDNSVDEHLAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I+V++N D S TV D+GRGIP    K+ G SA E++MT LHAGGKF+   YKVSGGL
Sbjct: 59  CKKISVSINADESITVEDDGRGIPVATQKQTGKSALELVMTVLHAGGKFDGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  + + ++REG+ +  ++  G +  P+   G     TGT+VTF P   
Sbjct: 119 HGVGASVVNALSDRVSVEVQREGHFWRQNYERGKILAPVAQ-GETTTKTGTKVTFKPDRT 177

Query: 181 IFSVQDFNYD--TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           IF  +  +YD  TL +R REL+FLN+ + ISL D+R+ + ++    Y  G+  FV Y+++
Sbjct: 178 IFKDETLSYDFTTLANRFRELAFLNAGLHISLTDERNGKKQD--FQYSEGVAEFVKYMNQ 235

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            KK L    +  +G +DN+ +++AM+WND Y E+V  + NNI   +GGTHL G R+ALTR
Sbjct: 236 SKKSLHNEVVYFKGEKDNVEVEIAMQWNDSYSESVFTYCNNINTHEGGTHLVGFRAALTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
              +Y  +    K  K ++ G+D REG  +V+S+K+ +P+F  QTK KL ++EV+ +VE+
Sbjct: 296 TTNAYATEKNLLKDLKANLEGEDIREGLAAVISVKVREPQFEGQTKTKLGNAEVKGIVET 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            VN+ L+ W++ +P  AK I+ K ++++  R+AAR+ARDLTRRK VLD  SLPGK+ADC 
Sbjct: 356 LVNEKLADWMDRNPSVAKNIIMKCVESARAREAARKARDLTRRKTVLDGGSLPGKMADCQ 415

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ERDP   EL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDK++SS+EI  +I
Sbjct: 416 ERDPALCELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKIISSEEIKVII 475

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           +ALGTGIG+D+ +++K+RYHKIIIMTDADVDG+HI TLLLTFF+RQMP ++  G++YI +
Sbjct: 476 SALGTGIGKDNVNVDKIRYHKIIIMTDADVDGSHIMTLLLTFFYRQMPLVLERGYVYIAQ 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY   +GK   Y+K+E +L +YL++  L          K  + + DLR  I +  + +
Sbjct: 536 PPLYRAKKGKEETYLKNEAALTEYLLSSGLGN---FKIKGKESLPEKDLRQLILNIQRFN 592

Query: 599 KLIKDFYPNHDKTFIEQAV--ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
            L++     +DK  +   +  ++      +D +    + + L   +N         + G 
Sbjct: 593 DLLRVSSKKYDKDVLYFLLSKVTDFEKTFTDAKKIEQVLTDLGAWVNSDQTLGITEYKGE 652

Query: 657 INNS--------DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
           +           DI   R A  +  +F  +   + S      R     I+      L+++
Sbjct: 653 VKTEAETGKMYADIYTVRYADRMTTKFSTDN--LRSSEIIELRKIWADIQAISTLPLTIL 710

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
              ++++          +    +KGI +QRYKGLGEMN  QLWETTLN + R+LL+V I 
Sbjct: 711 EGDNEVQFENYNDFYTHVMESTKKGIYIQRYKGLGEMNPEQLWETTLNKENRTLLKVTID 770

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           DA  AD+ FS LMG+ VEPRR+FI +N+L +  LD+
Sbjct: 771 DAVAADETFSILMGEMVEPRRQFIHDNALLARSLDV 806


>gi|255506765|ref|ZP_05382404.1| DNA gyrase subunit B [Chlamydia trachomatis D(s)2923]
          Length = 804

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/815 (44%), Positives = 509/815 (62%), Gaps = 27/815 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + Q   YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+   
Sbjct: 2   DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           + V +  DG  ++SDNGRGIP  +H++E       ISA EV++T LHAGGKF++ SYKVS
Sbjct: 61  VVVRILEDGGISISDNGRGIPIQIHEKESAKQGHEISALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS     ++ ++G  Y M F  G     L V G   +  GTEV F P
Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS   F+   L  RLREL+FLN  V I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVIFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L  +PI IQGSR     +I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY++    SK DK S+ G+D +EG  +++S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + EE+P  AK IV KV  A+  R+AA+RAR+LT RK  LD A LPGK
Sbjct: 360 SVSQQIGGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++ 
Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599

Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            L+++  I            F++              E      S L +      E+ E 
Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEA 654

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           +   +  ++  +++     V E+F  +          Y     + I  +           
Sbjct: 655 AIAANEESASRILELYKGSVLEEFQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
                     ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA 
Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804


>gi|76788912|ref|YP_327998.1| DNA gyrase subunit B [Chlamydia trachomatis A/HAR-13]
 gi|237804536|ref|YP_002888690.1| DNA gyrase subunit B [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167442|gb|AAX50450.1| DNA gyrase subunit B [Chlamydia trachomatis A/HAR-13]
 gi|231272836|emb|CAX09745.1| DNA gyrase subunit B [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 804

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/815 (44%), Positives = 508/815 (62%), Gaps = 27/815 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + Q   YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+   
Sbjct: 2   DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           + V +  DG  ++SDNGRGIP  +H++E       ISA EV++T LHAGGKF++ SYKVS
Sbjct: 61  VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS     ++ ++G  Y M F  G     L V G   +  GTEV F P
Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS   F+   L  RLREL+FLN  V I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVVFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L  +PI +QGSR     +I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKEILFPNPIYMQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY++    SK DK S+ G+D +EG  +++S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + EE+P  AK IV KV  A+  R+AA+RAR+LT RK  LD A LPGK
Sbjct: 360 SVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++ 
Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599

Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            L+++  I            F++              E      S L +      E+ E 
Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLHSH-----EEKEA 654

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           +   +  ++  +++     V E+   +          Y     + I  +           
Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
                     ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA 
Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804


>gi|255348547|ref|ZP_05380554.1| DNA gyrase subunit B [Chlamydia trachomatis 70]
 gi|255503087|ref|ZP_05381477.1| DNA gyrase subunit B [Chlamydia trachomatis 70s]
 gi|289525228|emb|CBJ14704.1| DNA gyrase subunit B [Chlamydia trachomatis Sweden2]
 gi|296434776|gb|ADH16954.1| DNA gyrase subunit B [Chlamydia trachomatis E/150]
 gi|296438496|gb|ADH20649.1| DNA gyrase subunit B [Chlamydia trachomatis E/11023]
          Length = 804

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/815 (44%), Positives = 508/815 (62%), Gaps = 27/815 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + Q   YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+   
Sbjct: 2   DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           + V +  DG  ++SDNGRGIP  +H++E       ISA EV++T LHAGGKF++ SYKVS
Sbjct: 61  VVVRILEDGGISISDNGRGIPIQIHEKESAKQGHEISALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS     ++ ++G  Y M F  G     L V G   +  GTEV F P
Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS   F+   L  RLREL+FLN  V I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVIFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L  +PI IQGSR     +I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY++    SK DK S+ G+D +EG  +++S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + EE+P  AK IV KV  A+  R+AA+RAR+LT RK  LD A LPGK
Sbjct: 360 SVSQQIGGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++ 
Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599

Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            L+++  I            F++              E      S L +      E+ E 
Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEA 654

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           +   +  ++  +++     V E+   +          Y     + I  +           
Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
                     ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA 
Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804


>gi|237802614|ref|YP_002887808.1| DNA gyrase subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|231273848|emb|CAX10638.1| DNA gyrase subunit B [Chlamydia trachomatis B/Jali20/OT]
          Length = 804

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/815 (44%), Positives = 507/815 (62%), Gaps = 27/815 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + Q   YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+   
Sbjct: 2   DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           + V +  DG  ++SDNGRGIP  +H++E       ISA EV++T LHAGGKF++ SYKVS
Sbjct: 61  VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS     ++ ++G  Y M F  G     L V G   +  GTEV F P
Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS   F+   L  RLREL+FLN  V I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVVFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L  +PI +QGSR      I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKEILFPNPIYMQGSRPRDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY++    SK DK S+ G+D +EG  +++S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + EE+P  AK IV KV  A+  R+AA+RAR+LT RK  LD A LPGK
Sbjct: 360 SVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++ 
Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599

Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            L+++  I            F++              E      S L +      E+ E 
Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLHSH-----EEKEA 654

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           +   +  ++  +++     V E+   +          Y     + I  +           
Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
                     ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA 
Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804


>gi|34556461|ref|NP_906276.1| DNA gyrase subunit B [Wolinella succinogenes DSM 1740]
 gi|34482175|emb|CAE09176.1| DNA GYRASE SUBUNIT B [Wolinella succinogenes]
          Length = 772

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/800 (43%), Positives = 497/800 (62%), Gaps = 29/800 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +QN  Y AD+I++LKGL+AV+KRP MYIGDT+  +GLHH+IYEV+DN+IDE++ G+ + I
Sbjct: 1   MQNQQYSADNIKVLKGLEAVRKRPGMYIGDTN-VNGLHHLIYEVVDNSIDEAMAGHCNTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           ++TL  +GS  + DNGRGIP D+H  E + AA V++T LHAGGKF++ SYKVSGGLHGVG
Sbjct: 60  SITLTKEGSAIIEDNGRGIPVDMHPTENLPAATVVLTVLHAGGKFDKDSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L + I++ GN+Y   F  GI    L + G      GT + F+P  +IF V
Sbjct: 120 VSVVNALSKKLVMTIRKNGNVYTQEFSCGIPKTGLDIIG-TSKKNGTTIEFIPDDEIFEV 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+ + L  R +EL++LN ++ I   D+R  +    +  ++GG+  FV +   +KK L+
Sbjct: 179 TVFDREVLARRFKELAYLNRNITIHFKDER--DNFNESYHFEGGLRQFVEH--LNKKVLV 234

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                   +  +  +++A+ +NDGY E VL F NNI   +GGTH +G R+ L+R ITSY+
Sbjct: 235 SQVFSFSDNESDTEVEIALAYNDGYDEKVLSFVNNIKTPEGGTHEAGFRAGLSRAITSYI 294

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           + +  +++    + GDD REG  +++S+K+ +P+F  QTK KL SS V+ +V+    + +
Sbjct: 295 DANANAREKDNKITGDDVREGLVAIVSVKVMEPQFEGQTKGKLGSSFVKPIVQKLTYEKI 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + EE+P +AK I++K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP  
Sbjct: 355 AKFFEENPNDAKAIMQKALMAARGREAAKKARELTRKKDSLMVGTLPGKLADCQSKDPSI 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L S EI  +ITALG G
Sbjct: 415 SELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMITALGCG 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDIN++RY KIIIMTDADVDG+HI+TLLLTFFFR +  +I  G+LYI +PPLY  
Sbjct: 475 IGEE-FDINRIRYQKIIIMTDADVDGSHIQTLLLTFFFRYLKPVIEAGYLYIAQPPLYRF 533

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK   Y++DE++L +YLI   +             +   DL   +  A      +K+ 
Sbjct: 534 KKGKKEIYLRDEKALSEYLIENGIENFAF------EGVGTPDLLEILRFASHYRLTLKEL 587

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
                       +    +  E    I++ ++        F+ +K     +  +    I +
Sbjct: 588 EKRF------AMIDVVKYMIEHRDLISLPMSELYIKLEEFVQQKGYNILNKRVEEEKIHL 641

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
                      V++ S       +      N I E  L+ L     G+K       ++L+
Sbjct: 642 YVQTHEGLVDLVIDDSLFTHPLFEEAYYVHNLILERDLSFL-----GEK----DILTILE 692

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            I    +KG  +QRYKGLGEMN  QLWETT+ P+ R LL+V+ITD  +A D+FS  MGDE
Sbjct: 693 EIEESAKKGAYIQRYKGLGEMNPEQLWETTMTPENRRLLKVQITDDMEASDVFSLFMGDE 752

Query: 785 VEPRREFIQENSLPSA-LDI 803
           VEPRR +IQ+++     LD+
Sbjct: 753 VEPRRAYIQDHAKDVKHLDV 772


>gi|15604910|ref|NP_219694.1| DNA gyrase subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|255310990|ref|ZP_05353560.1| DNA gyrase subunit B [Chlamydia trachomatis 6276]
 gi|255317291|ref|ZP_05358537.1| DNA gyrase subunit B [Chlamydia trachomatis 6276s]
 gi|6647525|sp|O84193|GYRB_CHLTR RecName: Full=DNA gyrase subunit B
 gi|3328595|gb|AAC67782.1| DNA Gyrase Subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|296435705|gb|ADH17879.1| DNA gyrase subunit B [Chlamydia trachomatis G/9768]
 gi|296436629|gb|ADH18799.1| DNA gyrase subunit B [Chlamydia trachomatis G/11222]
 gi|296437565|gb|ADH19726.1| DNA gyrase subunit B [Chlamydia trachomatis G/11074]
 gi|297140064|gb|ADH96822.1| DNA gyrase subunit B [Chlamydia trachomatis G/9301]
 gi|297748320|gb|ADI50866.1| DNA gyrase subunit B [Chlamydia trachomatis D-EC]
 gi|297749200|gb|ADI51878.1| DNA gyrase subunit B [Chlamydia trachomatis D-LC]
          Length = 804

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/815 (44%), Positives = 508/815 (62%), Gaps = 27/815 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + Q   YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+   
Sbjct: 2   DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           + V +  DG  ++SDNGRGIP  +H++E       ISA EV++T LHAGGKF++ SYKVS
Sbjct: 61  VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS     ++ ++G  Y M F  G     L V G   +  GTEV F P
Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS   F+   L  RLREL+FLN  V I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVVFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L  +PI +QGSR     +I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKEILFPNPIYMQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY++    SK DK S+ G+D +EG  +++S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + EE+P  AK IV KV  A+  R+AA+RAR+LT RK  LD A LPGK
Sbjct: 360 SVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++ 
Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599

Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            L+++  I            F++              E      S L +      E+ E 
Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEA 654

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           +   +  ++  +++     V E+   +          Y     + I  +           
Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
                     ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA 
Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804


>gi|188996890|ref|YP_001931141.1| DNA gyrase, B subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931957|gb|ACD66587.1| DNA gyrase, B subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 812

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/817 (43%), Positives = 510/817 (62%), Gaps = 26/817 (3%)

Query: 3   DNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           DNIQN+  Y A++IQ + GLD V+ RP+MYIGD  GE GLHH+++E++DNA+DE++ GYA
Sbjct: 6   DNIQNNIEYSAEAIQAVTGLDHVRARPAMYIGDI-GERGLHHLVWEIVDNAVDEAMAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I+V L+ DGS TV D+GRGIP D+H E  I A E++ T L AGGKF++K+Y+ SGGLH
Sbjct: 65  KNISVILHQDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS WL + + R G IY   +  G   +PL   G+     GT+VTF P   I
Sbjct: 125 GVGASVVNALSKWLVVEVYRNGKIYRQEYSYGKPAHPLKEIGTTT-KRGTKVTFKPDDSI 183

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F YDT+  R+REL+FLN  V+ ++ID+R  +  +   +Y+ GI  FV  L++ K 
Sbjct: 184 FETTTFKYDTIAKRIRELAFLNPGVKFTVIDER--KDIKEEFYYENGIIDFVRVLNQAKD 241

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           PL    I I+G +D + +++A ++N  Y+E +  F NNI   +GGTH+SG R+ALT+ + 
Sbjct: 242 PLFPDVIYIKGEKDGVLVEVAFQYNTSYNETLESFVNNIKTVEGGTHVSGFRAALTKSMN 301

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
             +      K+ K  V GDD REG T+V+S+K+P+P+F  QTK KL + +V+ +VES V 
Sbjct: 302 KTLAGMKLPKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESVVG 361

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D L  + +++   A  I +K ++A++ R+AAR+A++++RRK  L+ +SLPGKLADCSE +
Sbjct: 362 DYLIDFFDKNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSEDN 421

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P+  ELF+VEG+SAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS++EI  ++ A+
Sbjct: 422 PEICELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVNAI 481

Query: 482 GTGIG------------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           GTGIG            ++ FD++KLRYHKII+M DADVDG+HI TLLLT F+R  P +I
Sbjct: 482 GTGIGLPIKSEDEENKTEEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRYFPQII 541

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            NG LY+ +PPLY + +G+S  YVKD+E L   +I  +  E           ++K +++ 
Sbjct: 542 ENGHLYLAQPPLYKLKKGRSEIYVKDDEELAKIVIEYASDEVSI----EGKNLNKLEIKE 597

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE-SDQEINVSLASKLANRLNFIAEK 648
               + +   L +  Y   DK  I++ +   +   +   +E    +  KL   L     +
Sbjct: 598 VAKLSREYKDLKQSIYKRKDKKVIDEILKLSLTEEDLRSEEKVKEIVEKLKEVLKEY--E 655

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
               +     + DI V+R  R  +    ++   + S+     +     + E   T+  ++
Sbjct: 656 VYYKYDPEEADYDIFVERKERFSKTVNKIDVELLSSYAYVRVKEVERILLEKLGTLPIIV 715

Query: 709 C-NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                 I +     L D I+  G  G  +QRYKGLGEMN  QLWETT+NP TR LL+V I
Sbjct: 716 NYKDKSITVEDLDKLYDVIYEAGMTGCEIQRYKGLGEMNPEQLWETTMNPKTRRLLQVNI 775

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            DA+ AD++FS LMG++VEPR+EFI + +     LDI
Sbjct: 776 EDAALADEIFSILMGEKVEPRKEFIMKYAKEVRNLDI 812


>gi|88607620|ref|YP_505297.1| DNA gyrase, B subunit [Anaplasma phagocytophilum HZ]
 gi|88598683|gb|ABD44153.1| DNA gyrase, B subunit [Anaplasma phagocytophilum HZ]
          Length = 793

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/803 (50%), Positives = 542/803 (67%), Gaps = 20/803 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           SSY+A SI +L+GLDAVKKRP MYIGDTD  SGLHHM YEV+DNAIDE+L G+ + I + 
Sbjct: 2   SSYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIV 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V+DNGRGIP D+H+EEGISAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 62  IAADGSISVTDNGRGIPIDIHEEEGISAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSSWL+L I +EG  Y M F  G    PL + G  GN  GT V F+PSSD+FS  DF
Sbjct: 122 VNALSSWLELVIYKEGREYFMRFEEGKAVAPLKMVGECGNKKGTCVRFMPSSDVFSFTDF 181

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY-----KGGIEAFVSYLDRHKKP 242
           +Y TL++R+RELSFLNS+V ISL D R     E            G+  FV YLDR+K P
Sbjct: 182 SYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLDRNKTP 241

Query: 243 LMQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           +          S   IS++++M WND Y+EN+LCFTNNI Q++GGTHL+G RSALTR + 
Sbjct: 242 VTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSALTRCVN 301

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y       KK K S+IG+D REG T VLSIKMPDPRFSSQTK+KLVSSE R VVES + 
Sbjct: 302 NYATNEGYLKKAKVSIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIMF 361

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + LS+  E +P  A  +V++V+ ++  R+AAR+AR++ + +G LD  S+PGKLADC E+ 
Sbjct: 362 EKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKSRGTLDFTSIPGKLADCQEKS 421

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P+ SELF+VEG+SAGGSAKQGR R  QA+L LRGKILNVER   D+ LSS EI +LI A+
Sbjct: 422 PELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITSLIMAI 481

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G+ IG  SFDI+K+RYHKIIIMTDADVDG+HIRTLLLTFFFR M  LI  G+LYI +PPL
Sbjct: 482 GSNIGIGSFDISKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYLYIAQPPL 541

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +T+ K   Y+K++E+L DY++  +    +       G  S ++L+  +   ++I  + 
Sbjct: 542 YKLTKHKKDTYIKNDEALSDYIVGNATKNLVL---SGAGECSGDELKAVLRKCVRIANIT 598

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-NNS 660
           K +     +  +E  ++         +   +  +S++   +N +  + E  W+  +  + 
Sbjct: 599 KTYSRIVPQEVLEALIV-------RYKRHGMGSSSEIMAYMNSMFPEYE--WNVEVLEDG 649

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
            + + ++++G+ +++ L+   + +   +      + IE  +     L      I++  PC
Sbjct: 650 RLQILKLSQGMVDRYYLDADFMNTRDVQTILSVLDGIENVFTEDTVLTAKDCTIRVHSPC 709

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            L  ++   GRK +++QR+KGLGEMNA QLW+TTLNP TR+LL+VKI DA  AD +FS L
Sbjct: 710 VLASSVVEFGRKDMALQRFKGLGEMNADQLWDTTLNPQTRTLLKVKIADAEAADAIFSVL 769

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGD VEPRR+FI  N+L    +D
Sbjct: 770 MGDFVEPRRDFINNNALKVQNID 792


>gi|157414325|ref|YP_001481581.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81116]
 gi|157385289|gb|ABV51604.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81116]
          Length = 769

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKANNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRGLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769


>gi|320355370|ref|YP_004196709.1| DNA gyrase subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320123872|gb|ADW19418.1| DNA gyrase subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 803

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/813 (44%), Positives = 515/813 (63%), Gaps = 20/813 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ +  +SY A+ I++L GL+AV+KRPSMYIG+T G  GLHH+IYEV+DN+IDE+L G+
Sbjct: 1   MSE-LTETSYGAEQIKVLDGLEAVRKRPSMYIGNT-GVEGLHHLIYEVVDNSIDEALAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D + TV DNGRGIP D+H  E +SA E++MT LHAGGKF+  +YKVSGGL
Sbjct: 59  CDQISIVIHEDNAVTVEDNGRGIPVDMHPTENMSALELVMTTLHAGGKFDHSTYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS     +++R G IY  ++  G+  + L V G     TGT ++F P   
Sbjct: 119 HGVGVSVVNALSVRTVAQVQRNGKIYRQTYEYGMRTSELEVIG-TSEQTGTSISFKPDPS 177

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    F Y+ +++R+REL+FLN ++ I+L D+R            GGI ++V YL+R+
Sbjct: 178 IFTETTVFEYEIVKNRMRELAFLNKNIHITLKDERDGAENSFHF--DGGIVSYVEYLNRN 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +  +   PI I G RD + +D+ +++ DGY E +  F NNI  K+GG+H++G R+ALT+ 
Sbjct: 236 RTTVHPDPILISGERDTVQVDICLQYFDGYSERLFSFVNNINTKEGGSHVAGFRAALTKC 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y       K  K  + GDD REG T V+S+++P+P+F  QTK KL +SEV+S+VES 
Sbjct: 296 INRYASDDIIPKHLKEKMGGDDVREGLTCVISVRVPNPQFEGQTKTKLGNSEVKSIVESL 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            N+ L A+LE++P  A+ I+ K ++A+  R+AAR+ARDL+R K  + +  + GKLA+C  
Sbjct: 356 CNEKLGAYLEQNPAVARGILNKAVEAARAREAARKARDLSRTKSNISVM-MAGKLAECQS 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++P + ELF+VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+ARFDK+L S+EI  L+ 
Sbjct: 415 KNPAERELFIVEGDSAGGSAKQGRDRAIQAILPLRGKIMNVEKARFDKILDSEEIKQLVA 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           +LGTGIG + FD+ KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQM  LI NG +YI +P
Sbjct: 475 SLGTGIGSEEFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIENGHVYIGQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  QY  +EE L  Y +    S+ + +  + +  I++++L   +      ++
Sbjct: 535 PLYRLGKGKKEQYFLNEEELNAY-LYAQASQLMRIRTEQEVEIAEDELVTVLRKLSAFER 593

Query: 600 LIKDFYP-NHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIAEKSEKSWHGS 656
           ++      N  ++     + S V + +  +  E    LA +L NR + I      +W  +
Sbjct: 594 VVAYLERLNIQESMTLFLLDSDVHSAKQFEKREFVEHLAEQLKNRASQIGSIHSCAWRPA 653

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----- 711
               D+ +   +  +        +       ++       I        +L   G     
Sbjct: 654 CFEFDVTLAGQSHMMATV---GPNIPLINEYRHALDLYKTINPYLNGSFTLSKTGGTGQE 710

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            ++       L++ +     KG  +QRYKGLGEMN  QLW+TT+NP  R+L++VKI D  
Sbjct: 711 SQLTAENWHRLIELVREETFKGSHLQRYKGLGEMNPEQLWDTTMNPTNRTLIQVKIDDVE 770

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
             DD+F+ LMGD+VEPRREFIQ ++L  A LDI
Sbjct: 771 VTDDMFTTLMGDKVEPRREFIQNHALEVADLDI 803


>gi|148926822|ref|ZP_01810501.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844547|gb|EDK21654.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 769

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +++S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEANYIFDKIKDRGLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769


>gi|307746967|gb|ADN90237.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni M1]
 gi|315931303|gb|EFV10272.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 327]
          Length = 769

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRGLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769


>gi|88597733|ref|ZP_01100966.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561696|ref|YP_002343475.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|9297098|sp|O87667|GYRB_CAMJE RecName: Full=DNA gyrase subunit B
 gi|88190037|gb|EAQ94013.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359402|emb|CAL34184.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284925306|gb|ADC27658.1| DNA gyrase B subunit [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315928458|gb|EFV07770.1| DNA gyrase B subunit [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930330|gb|EFV09418.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 305]
          Length = 769

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +++S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRSLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769


>gi|86153959|ref|ZP_01072161.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842497|gb|EAQ59710.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 769

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV  +D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFV--IDLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRGLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769


>gi|86150547|ref|ZP_01068771.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152360|ref|ZP_01070570.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|121612557|ref|YP_999722.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004699|ref|ZP_02270457.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81-176]
 gi|315123619|ref|YP_004065623.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85838999|gb|EAQ56264.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840657|gb|EAQ57909.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|87249029|gb|EAQ71991.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 81-176]
 gi|315017341|gb|ADT65434.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 769

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV  +D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFV--IDLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEANYIFDKIKDRGLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769


>gi|205355744|ref|ZP_03222514.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346521|gb|EDZ33154.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 769

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVVGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +++S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEANYIFDKIKDRGLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769


>gi|166154400|ref|YP_001654518.1| DNA gyrase subunit B [Chlamydia trachomatis 434/Bu]
 gi|166155275|ref|YP_001653530.1| DNA gyrase subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930388|emb|CAP03881.1| DNA gyrase subunit B [Chlamydia trachomatis 434/Bu]
 gi|165931263|emb|CAP06835.1| DNA gyrase subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 804

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/815 (44%), Positives = 507/815 (62%), Gaps = 27/815 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + Q   YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+   
Sbjct: 2   DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           + V +  DG  ++SDNGRGIP  +H++E       ISA EV++T LHAGGKF++ SYKVS
Sbjct: 61  VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS     ++ ++G  Y M F  G     L V G   +  GTEV F P
Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS   F+   L  RLREL+FLN    I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGATIVFEDDRDTGFDKVVFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L  +PI IQGSR     +I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY++    SK DK S+ G+D +EG  +++S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + EE+P  AK IV KV  A+  R+AA+RAR+LT RK  LD A LPGK
Sbjct: 360 SVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTFRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++ 
Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599

Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            L+++  I            F++              E      S L +      E+ E 
Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEA 654

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           +   +  ++  +++     V E+   +          Y     + I  +           
Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
                     ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA 
Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 770 EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLDI 804


>gi|57236917|ref|YP_178032.1| DNA gyrase subunit B [Campylobacter jejuni RM1221]
 gi|57165721|gb|AAW34500.1| DNA gyrase, B subunit [Campylobacter jejuni RM1221]
          Length = 769

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/803 (43%), Positives = 499/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV  +D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFV--IDLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ KVL A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKVLMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEANYIFDKIKDRGLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769


>gi|48094245|gb|AAT40430.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|315057444|gb|ADT71773.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni S3]
          Length = 769

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/803 (43%), Positives = 499/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LNS + I+  D R  +    +  ++GGI  FV  +D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNSKITINFKDNRVGK--HESFHFEGGISQFV--IDLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEANYIFDKIKDRGLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769


>gi|283956181|ref|ZP_06373666.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792335|gb|EFC31119.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 1336]
          Length = 769

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDMNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVTNGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRGLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769


>gi|15618195|ref|NP_224480.1| DNA gyrase subunit B [Chlamydophila pneumoniae CWL029]
 gi|15835810|ref|NP_300334.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138]
 gi|16752763|ref|NP_445031.1| DNA gyrase subunit B [Chlamydophila pneumoniae AR39]
 gi|33241617|ref|NP_876558.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183]
 gi|6647530|sp|Q9Z8R3|GYRB_CHLPN RecName: Full=DNA gyrase subunit B
 gi|4376548|gb|AAD18424.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae CWL029]
 gi|7189402|gb|AAF38314.1| DNA gyrase, subunit B [Chlamydophila pneumoniae AR39]
 gi|8978649|dbj|BAA98485.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138]
 gi|28415637|dbj|BAC57414.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae]
 gi|33236126|gb|AAP98215.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183]
          Length = 805

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/817 (44%), Positives = 509/817 (62%), Gaps = 30/817 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + +  +YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY   
Sbjct: 2   DPKEKNYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSR 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           I V +  DG   + DNGRGIP ++H+ E       +SA EV++T LHAGGKF++ SYKVS
Sbjct: 61  IDVRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS  L   + ++   Y+M F  GI   PL    S  +  GTE+ F P
Sbjct: 121 GGLHGVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLQYV-SVSDRQGTEIVFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS   F+   L  RLREL+FLN  + I   D R     ++T FY+GGI++FVSYL+
Sbjct: 180 DPKIFSTCTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L   PI I G+R      I  + A++WN GY E V  + NNIP + GGTHL+G  
Sbjct: 240 QNKESLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I +Y++    +K +K ++ G+D REG T+V+S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVS 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +  V + L+ + EE+P  A++IV KV  A+  R+AA++AR+LT RK  LD A LPGK
Sbjct: 360 SVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IGT+I ALG GIG D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGTIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++ YL+    +E   LF  ++  +    L +FI+ 
Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTNESSILFKSTERELRGEALESFINV 599

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L ++  I          F E   +           +  +   +    L    EK E   
Sbjct: 600 ILDVESFINTLEKKAIP-FSEFLEMYKEGIGYPLYYLAPATGMQGGRYLYSDEEKEEALA 658

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               +   I        ++   V     I +   +Y    S+ +         +I N D 
Sbjct: 659 QEETHKFKI--------IELYKVAVFVDIQNQLKEYGLDISSYL--IPQKNEIVIGNEDS 708

Query: 714 ----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                       +++ + ++GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+ V + D
Sbjct: 709 PSCNYSCYTLEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIHVSLKD 768

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           A +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 769 AVEADHIFTMLMGEEVPPRREFIESHALSIRINNLDI 805


>gi|283953662|ref|ZP_06371193.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 414]
 gi|283794703|gb|EFC33441.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 414]
          Length = 769

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/798 (43%), Positives = 498/798 (62%), Gaps = 31/798 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D + V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTVDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E I    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDIHPTENIPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF + +
Sbjct: 121 VVNALSKKLVATVERNGKIYRQEFSEGKIISEFGVIGKSK-KTGTTIEFWPDDQIFEMTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FNY+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +  
Sbjct: 180 FNYEILVKRFRELAYLNPKITINFKDNRIGK--HESFHFEGGISQFVT--DLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL S+ VR +V     + LS 
Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLSK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G G+G
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGVG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D F+++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG++Y+ +PPLY   +
Sbjct: 476 ED-FNLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGYIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRVILKDLEK 588

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
             +   + + +I      + + E   ++  K      F+  +     +  IN ++I    
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEKLFNVIKK------FLETQGHNILNYYINENEIRAFV 642

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
             +   E+ V+          +       +I++  L                   +L+ +
Sbjct: 643 QTQNGLEELVINEELFTHPLYEEASYIFGKIKDRGLEFN-----------KDILEILEDV 691

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
            +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  MGDEVE
Sbjct: 692 ETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFMGDEVE 751

Query: 787 PRREFIQENSLPSA-LDI 803
           PRR++IQ ++     LD+
Sbjct: 752 PRRDYIQAHAKDVKHLDV 769


>gi|94987227|ref|YP_595160.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Lawsonia intracellularis PHE/MN1-00]
 gi|94731476|emb|CAJ54839.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Lawsonia intracellularis PHE/MN1-00]
          Length = 799

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/809 (43%), Positives = 496/809 (61%), Gaps = 16/809 (1%)

Query: 1   MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+ N +     Y ADSI IL+GL AV+ RP+MYIG TD   GLHH++YEV+DN+IDE++ 
Sbjct: 1   MASNSEIIPKDYTADSITILEGLQAVRMRPAMYIGSTD-TRGLHHLVYEVIDNSIDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I V L++D S TV DNGRGIP D+H +EG+ A +V+MT+LHAGGKF+  +YKVSG
Sbjct: 60  GFCTRIDVVLHLDNSITVRDNGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNDTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG+S VNALS  L++ I R G  ++  +  G+    L   G + ++ GT + F   
Sbjct: 120 GLHGVGLSCVNALSEQLEVTILRGGYRWKQKYSRGVPLENLQRIGES-DNHGTTIRFKAD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +IF   +++Y+TL+ R  EL++LN  ++I   D+R+ E        +GGI  FV  ++ 
Sbjct: 179 EEIFETTEYSYETLKRRFEELAYLNKGLEIHCTDERTSETH--LFKAEGGIHQFVKDINT 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +  L    I  +   + + ID A+++N GY EN L F NNI  K+GGTHL+G ++ALTR
Sbjct: 237 GESILHS-IISRESIVEGVMIDFALQYNAGYKENTLTFANNIRTKEGGTHLAGFKTALTR 295

Query: 299 QITSYVEKSFGSKK--DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            I  Y++      K    +++ GDD REG T+VLS+K+P+P+F  QTK KL +SE+  +V
Sbjct: 296 AINGYIKGQPDLSKKLKGQTLSGDDVREGLTAVLSVKLPNPQFEGQTKTKLGNSEIAGIV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
              V   L  + +E+P + + I+ K +DA+  R+AARRA++L RRKG L   +LPGKLAD
Sbjct: 356 GGAVYTSLDTYFQENPKDIRCIIDKAIDAARAREAARRAKELVRRKGALFDNALPGKLAD 415

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  ++P +SELF+VEGDSAGGSAKQGR+   QAILPLRGKILN+ER RFDKML+++EI  
Sbjct: 416 CQSKNPAESELFIVEGDSAGGSAKQGRNPNIQAILPLRGKILNIERTRFDKMLANKEIKA 475

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITA+G GIG++  D  KLRY+KI+IMTDADVDGAHIRTLLLTFFFR    LI  G LYI
Sbjct: 476 LITAMGAGIGEEDTDYQKLRYYKIVIMTDADVDGAHIRTLLLTFFFRNYVGLIERGHLYI 535

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY +   KS +++KD+ SL D+L+   +S E+E+  +S  ++  +D+   +     
Sbjct: 536 AQPPLYRVHNSKSEKFIKDDPSLNDFLL-HRVSSELEIQTESGKLLKGSDIITTMKQIES 594

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
           I +  KD         +   +I+   + +      +S   ++   LN  +  +    + S
Sbjct: 595 ISQRTKDAELAGISENLFMLLIT---SPKKLTSDVLSSLEEIQLYLN-TSGYNITVENES 650

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIK 715
             + D L          +  +      S        +  + +         +  +G    
Sbjct: 651 HEDGDRLFTIFENKNGHKTRIPADFFASKIYSSTWDVMDSLLTMCGGINFIVFHSGTSHT 710

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I     L        RKGI++QRYKGLGEMN  QLW TT++P  R+LL+V I DA +A++
Sbjct: 711 INDLFKLYQFTLDEARKGINIQRYKGLGEMNPEQLWVTTMDPQNRTLLQVTINDAEEANE 770

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            F +LMG+ VEPRREFI+ N+L    LDI
Sbjct: 771 TFEQLMGERVEPRREFIERNALNVRDLDI 799


>gi|288818582|ref|YP_003432930.1| DNA gyrase B subunit [Hydrogenobacter thermophilus TK-6]
 gi|288787982|dbj|BAI69729.1| DNA gyrase B subunit [Hydrogenobacter thermophilus TK-6]
 gi|308752173|gb|ADO45656.1| DNA gyrase, B subunit [Hydrogenobacter thermophilus TK-6]
          Length = 786

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/800 (41%), Positives = 491/800 (61%), Gaps = 15/800 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++   Y A+ I+ + GL+ V+ RPSMYIGD  GE GLHH+++E+LDNA+DE + GYA  I
Sbjct: 1   MEMERYQAEDIKAVTGLEHVRLRPSMYIGDV-GERGLHHLLWEILDNAVDEHVAGYAKNI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           +V ++ DGS +V D+GRGIP DLH + GI A +++ T L AGGKF++K Y+ SGGLHGVG
Sbjct: 60  SVVIHEDGSVSVEDDGRGIPVDLHPDTGIPAVQMVFTMLGAGGKFDKKVYRYSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALS WL + + R+G I+   +  G    PL V GS     GT+VTF P +DIF  
Sbjct: 120 ASVVNALSEWLAVEVYRDGKIHRQEYSRGEPLYPLKVIGST-IKRGTKVTFKPDADIFET 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
                D ++ R+REL++LN      L+D+R  +          GIE  V +L   K+PL 
Sbjct: 179 TKIKLDLVERRVRELAYLNPDCTFRLLDERIGKEFVYKF--DKGIEELVKFLSTGKEPLF 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              IRI+  R+ + +D+A  +   Y E V  F NNI   +GGTH++G RS LT+ +   +
Sbjct: 237 DQVIRIREEREGVDVDVAFLYTKDYRELVESFVNNIKTVEGGTHITGFRSGLTKAVMRSL 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +     K+ K ++ G+D REG  +V+S K+P+P+F  QTK KL +  V+S+VES V + L
Sbjct: 297 QIIKLQKELKEAITGEDLREGLVAVVSCKVPEPQFEGQTKTKLGNQNVKSIVESVVYEHL 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S + EE+    + IV+K ++A++ R+AA++A++L RRK  L+  +LPGKLADCSE+DP+K
Sbjct: 357 SEYFEENKEIYRKIVEKAVEAALAREAAKKAKELVRRKSPLEDTTLPGKLADCSEKDPQK 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELF+VEG+SAGGSAKQGR R  QAILPLRGKILNVE+AR DK+ S++EI  +++++G G
Sbjct: 417 CELFIVEGESAGGSAKQGRDRRTQAILPLRGKILNVEKARLDKVFSNEEIKAIVSSIGCG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG +  D++KLRYHK+I+MTDADVDG+HIRTLLLTFF+R MP LI  G LYI +PPLY +
Sbjct: 477 IGDEL-DLSKLRYHKVILMTDADVDGSHIRTLLLTFFYRYMPKLIEAGHLYIAQPPLYRL 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK++ Y+KD+  LE+ L+    ++   +           +L   + +  + ++  K  
Sbjct: 536 KKGKTVLYLKDDRELENTLMEYIKNQGTLIDAQ-GRKYQDEELMKLLKNLREFEENYKYL 594

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
                +  +       +   +   E  V     L  R N      E  +    +  D+++
Sbjct: 595 IRRKGEDVLSALQHVKLSEEDLRDEKAVEKKLSLL-RENLPEYTIETKYDHINSAYDLIL 653

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
                G  +  +++   + S    YK +FS+         +++        +     +L 
Sbjct: 654 TDTKTG--KCVIIDVDFLSSLA--YKSVFSDL---ELQLPVTIGLEKKSRTLHHVHQILS 706

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
           +   + ++   +QRYKGLGEMN  QLWETT+NP TR LL++ I DA++AD +F+ LMG++
Sbjct: 707 SFMELAKESFEVQRYKGLGEMNPEQLWETTMNPATRRLLKISIEDAAEADRIFTILMGED 766

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRREFI+  +     LD+
Sbjct: 767 VEPRREFIETYAREVRNLDV 786


>gi|197120425|ref|YP_002132376.1| DNA gyrase subunit beta [Anaeromyxobacter sp. K]
 gi|196170274|gb|ACG71247.1| DNA gyrase, B subunit [Anaeromyxobacter sp. K]
          Length = 795

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/802 (44%), Positives = 493/802 (61%), Gaps = 24/802 (2%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           L+GL+AV+KRP MYIGD  G  GLHH++YEV+DN++DE++ G A+ I V ++ D S TV 
Sbjct: 2   LEGLEAVRKRPHMYIGDV-GARGLHHLVYEVVDNSVDEAMAGRANEINVAIHADNSITVL 60

Query: 78  DNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
           DNG GIP   H   +G+   +V++T+LHAGGKF   +YKVSGGLHGVGV+ VNALS WLK
Sbjct: 61  DNGSGIPIGPHPTVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLK 120

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
             + R+G ++   +  G     +   G      GT +TF P + IF V +++++TL  RL
Sbjct: 121 AEVYRDGKVWAQRYERGTPAGKVTAIGET-QRRGTRITFKPDATIFEVTEYSFETLSGRL 179

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP----IRIQG 252
           REL+FLN+ ++I++ D+R  +  E    +K GI  FV++L++ ++ L Q P      ++ 
Sbjct: 180 RELAFLNAGLKITIEDERHGKKHE--FLFKDGIREFVAFLNKSREVLFQPPIALRQEVET 237

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-GSK 311
            R    +++A++WNDGY E V  F NNI   +GGTHL G ++ALTR I +Y +K+     
Sbjct: 238 ERGAALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKNNLFKD 297

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
                  GDD REG  +V+S+++P   F  QTK KL ++E +S+VE+ +N+ LSA+LEE+
Sbjct: 298 LKDELPSGDDMREGLAAVISVRLPGASFEGQTKTKLSNTEAKSMVETMLNERLSAFLEEN 357

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P  AK I  KV +A+  R AAR+AR+  RRKG LD ASLPGKLADC  RDPK+SEL+LVE
Sbjct: 358 PNVAKRICGKVAEAARARIAARKARETVRRKGALDSASLPGKLADCQSRDPKESELYLVE 417

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR R  QAILPLRGKILNVE+ARFDKML S EI T+ITALGTGIG + FD
Sbjct: 418 GDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLGSAEIATIITALGTGIGPEEFD 477

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           + K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMPS+I  G +YI +PPL+ + +GK   
Sbjct: 478 VEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPSVIERGLVYIAQPPLFRVAKGKKES 537

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           Y+KDE +L++YL+         +    + VI   DL     DA+    L+       D  
Sbjct: 538 YLKDEAALDEYLLALGTDRTRLV--AGETVIEGRDLARLARDAIAYRALLARVDRRRDSR 595

Query: 612 FIEQAVISGVFNCESDQEINV---------SLASKLANRLNFIAEKSEKSWHGSINNSDI 662
            ++ A+  G  + +  +               A KL   L     K E+          +
Sbjct: 596 IVDAAIQLGDLDLDLLKHHEQVKEQVQKIFDKAQKLHPELQVRIAKIER--DEEHGCDAL 653

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           + +    G      L+   +              I E       L       ++      
Sbjct: 654 VYQTSMAGAPRDTRLDHDYLSGAEWGELAALHAAIAELGPGPFRLETPEGAEEVRDVFEA 713

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           ++ +     +G ++QRYKGLGEMN  QLWETT++P  R++L+V++ D  +AD++FS LMG
Sbjct: 714 VEAVKKAAGQGQTIQRYKGLGEMNPEQLWETTMDPARRTMLQVRVDDTVEADEVFSILMG 773

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D VEPRREFI++++L    LDI
Sbjct: 774 DAVEPRREFIEKHALDVQNLDI 795


>gi|242310229|ref|ZP_04809384.1| DNA gyrase subunit B [Helicobacter pullorum MIT 98-5489]
 gi|239523526|gb|EEQ63392.1| DNA gyrase subunit B [Helicobacter pullorum MIT 98-5489]
          Length = 772

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/805 (44%), Positives = 507/805 (62%), Gaps = 39/805 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++N  Y   SI++LKGL+AV+KRP MYIGDT+  +GLHH+IYEV+DN+IDE++ GY + I
Sbjct: 1   MENKQYSGSSIKVLKGLEAVRKRPGMYIGDTN-INGLHHLIYEVVDNSIDEAMAGYCNEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           ++TL  +GS  + DNGRGIP D+H  E I AA V++T LHAGGKF+Q SYKVSGGLHGVG
Sbjct: 60  SITLTKEGSAIIKDNGRGIPVDIHPTENIPAATVVLTVLHAGGKFDQDSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ I + G IY  +F  GI  + L + G    + GT + F+P   IF V
Sbjct: 120 VSVVNALSKSLQMTIYKNGQIYRQNFAQGIPQDELTIIGECK-ENGTTIEFIPDGTIFEV 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F  + L  R +EL++LN  + I   D+R  +  E T  ++GG+  FVS  D +KKPL+
Sbjct: 179 TEFQREILAKRFKELAYLNKQITIHFKDER--DNFEETYHFEGGLNQFVS--DLNKKPLI 234

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            + I  +G  +++ + +A+ +NDG+ E VL F NNI   DGGTH SG R  LTR IT+Y+
Sbjct: 235 STIISFEGLENDVEMQIALAYNDGFDEKVLSFVNNIRTIDGGTHESGFRMGLTRVITNYI 294

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E +  +++    + G+D REG  +++S+K+ DP+F  QTK KL SS VR +V+    + L
Sbjct: 295 EANANAREKDSKITGEDIREGLIAIVSVKVVDPQFEGQTKGKLGSSFVRPIVQKLTFEKL 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + EE+P EAK I++K L A+  R+AA++AR+LTR+K    + +LPGKLADC  +DP  
Sbjct: 355 TKFFEENPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQSKDPSI 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S+EI  LITALG G
Sbjct: 415 SEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLITALGCG 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D FDI+K+RY+KIIIMTDADVDG+HI+TLL+TFFFR +  +I +G+LYI +PPLY  
Sbjct: 475 IGED-FDISKIRYNKIIIMTDADVDGSHIQTLLMTFFFRYLRGIIESGYLYIAQPPLYRF 533

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK   Y+KDE++L +YLI   +             I   DL  F          + + 
Sbjct: 534 KKGKKEIYLKDEKALSEYLIENGIENFEFQ------GIGTKDLIEFFKIVAHYRSTLNEL 587

Query: 605 YPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                     + FIE   + G+ N E  ++I   + S   N LN + ++     +   ++
Sbjct: 588 EKRFQLIEIVRHFIENPDLIGMKNQELYEQIKQKIQSLNFNILNEMLDEQRIHLYVQTDS 647

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             + +K           ++         +       +++E          N + ++   P
Sbjct: 648 GLVDIK-----------IDDELFTHPLFEEAHFVYGKLKE---------RNLEFLQGNDP 687

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             +L+ I    +KG  +QRYKGLGEMN  QLWETT+ P+ R L+RV+I D  +A D+FS 
Sbjct: 688 VEMLEKIEESSKKGADIQRYKGLGEMNPEQLWETTMTPENRRLIRVEIKDVEEASDVFSL 747

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
            MGDEVEPRRE+IQ ++     LD+
Sbjct: 748 FMGDEVEPRREYIQAHAKDVKHLDV 772


>gi|220915127|ref|YP_002490431.1| DNA gyrase, B subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219952981|gb|ACL63365.1| DNA gyrase, B subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 795

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/802 (44%), Positives = 494/802 (61%), Gaps = 24/802 (2%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           L+GL+AV+KRP MYIGD  G  GLHH++YEV+DN++DE++ G A+ I V ++ D S TV 
Sbjct: 2   LEGLEAVRKRPHMYIGDV-GARGLHHLVYEVVDNSVDEAMAGRANEINVAIHADNSITVL 60

Query: 78  DNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
           DNG GIP   H   +G+   +V++T+LHAGGKF   +YKVSGGLHGVGV+ VNALS WLK
Sbjct: 61  DNGSGIPIGPHPTVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLK 120

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
             + R+G ++   +  G     +   G      GT +TF P + IF V +++++TL  RL
Sbjct: 121 AEVYRDGKVWAQRYERGTPAGKVTAIGET-QRRGTRITFKPDATIFEVTEYSFETLSGRL 179

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP----IRIQG 252
           REL+FLN+ ++I++ D+R  +  E    +K GI  FV++L++ ++ L Q P      ++ 
Sbjct: 180 RELAFLNAGLKITIEDERHGKKHE--FLFKDGIREFVAFLNKSREVLFQPPIALRQEVET 237

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-GSK 311
            R    +++A++WNDGY E V  F NNI   +GGTHL G ++ALTR I +Y +K+     
Sbjct: 238 ERGAALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKNNLFKD 297

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
                  GDD REG  +V+S+++P   F  QTK KL ++E +S+VE+ +N+ LSA+LEE+
Sbjct: 298 LKDELPSGDDMREGLAAVISVRLPGASFEGQTKTKLSNTEAKSMVETMLNERLSAFLEEN 357

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P  AK I  KV +A+  R AAR+AR+  RRKG LD ASLPGKLADC  RDPK+SEL+LVE
Sbjct: 358 PNVAKRICGKVAEAARARIAARKARETVRRKGALDSASLPGKLADCQSRDPKESELYLVE 417

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR R  QAILPLRGKILNVE+ARFDKML S EI T+ITALGTGIG + FD
Sbjct: 418 GDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLGSAEIATIITALGTGIGPEEFD 477

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           + K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMPS+I  G +YI +PPL+ + +GK   
Sbjct: 478 VEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPSVIERGLVYIAQPPLFRVAKGKKES 537

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           Y+KDE +L++YL+         +  D+  VI   DL     DA+    L+       D  
Sbjct: 538 YLKDEAALDEYLLALGTDRTRLVAGDT--VIEGRDLARLARDAIAYRALLARVDRRRDSR 595

Query: 612 FIEQAVISGVFNCESDQEINV---------SLASKLANRLNFIAEKSEKSWHGSINNSDI 662
            ++ A+  G  + +  +               A KL   L     K E+          +
Sbjct: 596 IVDAAIQLGDLDLDLLKHHEQVKEQVQKIFDKAQKLHPELQVRIAKIER--DEEHGCDAL 653

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           + +    G      L+   +              I E       L       ++      
Sbjct: 654 VYQTSMAGAPRDTRLDHDYLSGAEWGELAALHAAIAELGPGPFRLETPEGAEEVLDVFEA 713

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           ++ +     +G ++QRYKGLGEMN  QLWETT++P  R++L+V++ D  +AD++FS LMG
Sbjct: 714 VEAVKKAAGQGQTIQRYKGLGEMNPEQLWETTMDPARRTMLQVRVDDTVEADEVFSILMG 773

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D VEPRREFI++++L    LDI
Sbjct: 774 DAVEPRREFIEKHALDVQNLDI 795


>gi|86156434|ref|YP_463219.1| DNA gyrase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85772945|gb|ABC79782.1| DNA gyrase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 795

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/802 (44%), Positives = 492/802 (61%), Gaps = 24/802 (2%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           L+GL+AV+KRP MYIGD  G  GLHH++YEV+DN++DE++ G A+ I V ++ D S TV 
Sbjct: 2   LEGLEAVRKRPHMYIGDV-GARGLHHLVYEVVDNSVDEAMAGRANEINVAIHADNSVTVL 60

Query: 78  DNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
           DNG GIP   H   +G+   +V++T+LHAGGKF   +YKVSGGLHGVGV+ VNALS WLK
Sbjct: 61  DNGSGIPVGPHPTVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLK 120

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
             + R+G ++   +  G     +   G      GT +TF P + IF V +++++TL  RL
Sbjct: 121 AEVYRDGKVWAQRYERGTPAGKVTAIGET-QRRGTRITFKPDATIFEVTEYSFETLSGRL 179

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP----IRIQG 252
           REL+FLN+ ++I++ D+R  +  E    +K GI  FV++L++ +  L Q P      ++ 
Sbjct: 180 RELAFLNAGLKITIEDERHGKKHE--FLFKDGIREFVAFLNKSRDVLFQPPIALRQEVET 237

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-GSK 311
            R    +++A++WNDGY E V  F NNI   +GGTHL G ++ALTR I +Y +K+     
Sbjct: 238 ERGAALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKNNLFKD 297

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
                  GDD REG  +V+S+++P   F  QTK KL ++E +S+VE+ +N+ LSA+L+E+
Sbjct: 298 LKDELPSGDDMREGLAAVISVRLPGASFEGQTKTKLSNTEAKSMVETMLNERLSAFLDEN 357

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P  AK I  KV +A+  R AAR+AR+  RRKG LD ASLPGKLADC  RDPK+SEL+LVE
Sbjct: 358 PNVAKRICGKVAEAARARIAARKARETVRRKGALDSASLPGKLADCQSRDPKESELYLVE 417

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR R  QAILPLRGKILNVE+ARFDKML S EI T+ITALGTGIG + FD
Sbjct: 418 GDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLGSAEIATIITALGTGIGPEEFD 477

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           + K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMPS+I  G +YI +PPL+ + +GK   
Sbjct: 478 VEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPSVIERGLVYIAQPPLFRVAKGKKES 537

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           Y+KDE +L++YL+         +    + V+   DL     DA+    L+       D  
Sbjct: 538 YLKDEAALDEYLLALGTDRTRLV--AGETVVEGRDLARLARDAIAYRALLARVDRRRDSR 595

Query: 612 FIEQAVISGVFNCESDQEINV---------SLASKLANRLNFIAEKSEKSWHGSINNSDI 662
            ++ A+  G  + +  +               A KL   L     K E+          +
Sbjct: 596 IVDAAIQLGDLDLDLLKHHEQVKEQVQKIFEKAQKLHPELQVRIAKIER--DEEHGCDAL 653

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           + +    G      L+   +              I E       L       ++      
Sbjct: 654 VYQTSMAGAPRDTRLDHDYLSGAEWGELAALHAAIAELGPGPFRLETPEGAEEVLDVFEA 713

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           ++ +     +G ++QRYKGLGEMN  QLWETT++P  R++L+V++ D  +AD++FS LMG
Sbjct: 714 VEAVKKAAGQGQTIQRYKGLGEMNPEQLWETTMDPARRTMLQVRVDDTVEADEVFSILMG 773

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D VEPRREFI++++L    LDI
Sbjct: 774 DAVEPRREFIEKHALDVQNLDI 795


>gi|301335659|ref|ZP_07223903.1| DNA gyrase subunit B [Chlamydia trachomatis L2tet1]
          Length = 804

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/815 (43%), Positives = 507/815 (62%), Gaps = 27/815 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + Q   YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+   
Sbjct: 2   DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117
           + V +  DG  ++SDNGRGIP  +H++E       ISA EV++T LHAGGKF++ SYKVS
Sbjct: 61  VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS     ++ ++G  Y M F  G     L V G   +  GTEV F P
Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS   F+   L  RLREL+FLN    I   D R     ++  FY+GGI++FVSYL+
Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGATIVFEDDRDTGFDKVVFFYEGGIQSFVSYLN 239

Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++K+ L  +PI IQGSR     +I  + A++WN GY E +  + NNIP + GGTHL+G  
Sbjct: 240 QNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY++    SK DK S+ G+D +EG  +++S+K+P+P+F  QTK+KL +S+V 
Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SV +    + L+ + EE+P  AK IV KV  A+  R+AA+RAR+LT RK  LD A LPGK
Sbjct: 360 SVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTFRKSALDSARLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC E+DP+K E+++VEG+SAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QE
Sbjct: 420 LIDCLEKDPEKCEMYIVEGNSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  
Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++ 
Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599

Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            L+++  I            F++              E      S L +      E+ E 
Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEA 654

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           +   +  ++  +++     V E+   +          Y     + I  +           
Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
                     ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA 
Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 770 EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLDI 804


>gi|281356695|ref|ZP_06243186.1| DNA gyrase, B subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316822|gb|EFB00845.1| DNA gyrase, B subunit [Victivallis vadensis ATCC BAA-548]
          Length = 824

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/831 (42%), Positives = 504/831 (60%), Gaps = 35/831 (4%)

Query: 1   MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+N        S Y A  I +L+GL+AV+ RPSMYIGDT G+ GLHH++YEV+DN+IDE
Sbjct: 1   MSENSVDITGSASEYSASKITVLEGLEAVRVRPSMYIGDT-GQRGLHHLVYEVVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L GYA  I VT++ D S +V D+GRGIP D+H+ E   A EV++T LHAGGKF+  SYK
Sbjct: 60  ALAGYASHIEVTIHSDNSISVEDDGRGIPVDMHEGEHKPAVEVVLTILHAGGKFDHNSYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS WL   + R    Y + F  G+  +PL   G      GT V+F
Sbjct: 120 VSGGLHGVGVSCVNALSDWLVAEVYRNSKAYTIRFERGVTVDPLRELGPTT-KRGTRVSF 178

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----ITMFYKGGIEA 231
            P   IF    + +D L  RLREL+FLNS ++I+L D+R  E +      T  Y+GGI  
Sbjct: 179 KPDGTIFPDTVYVWDILAKRLRELAFLNSGIRITLTDERLEEGQTAGRSETFHYEGGIRE 238

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVS L+ +K  +    I     R+ I +++AM++NDG  EN+  + NNI   +GG+HL+G
Sbjct: 239 FVSMLNVNKTVINPDVIYFHRERNGIDVEVAMQYNDGTAENIYSYANNINTIEGGSHLTG 298

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR I +Y   +    K+   + G D REG ++V+S+K+PDP+F  QTK KL +SE
Sbjct: 299 FQTALTRTINNY---TKTMMKNDTPLSGTDVREGLSAVISVKVPDPQFEGQTKTKLGNSE 355

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR +VES +ND L A+LEEHP  A+ I    + AS  R+AAR+AR+  RRKG L+   LP
Sbjct: 356 VRGIVESVINDELGAYLEEHPKIAENIGNNAMLASRAREAARKARETVRRKGALEGIGLP 415

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS RDP   EL++VEGDSAGGSAK GR    QAILP+RGK+LNVE+ RFDK+L +
Sbjct: 416 GKLADCSNRDPSMCELYIVEGDSAGGSAKSGRDSGFQAILPIRGKLLNVEKVRFDKVLEN 475

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +EI +LI A+G GI  + FD++K RYH+++IMTDADVDG+HIRTLLLTFFFRQM  LI  
Sbjct: 476 KEIQSLIYAIGCGI-AEEFDVSKARYHRVVIMTDADVDGSHIRTLLLTFFFRQMKPLIEA 534

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI KPPL+ +T+G+  QY+  E+ L+ YL+     E++ +      +++   +   +
Sbjct: 535 GYVYIAKPPLFKVTKGRKEQYIDTEDQLDSYLVRLG-EEDLTVKNGDGELLTPEQVSALV 593

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVIS-----GVFNCESDQEINVSLASKLANRLNFIA 646
               K+ K                  I+      V +    +      A  L +    ++
Sbjct: 594 QLYTKVSKAAAGIRRCGIDPHEYFNAITPEGRCPVSHVTIRENDGTQTARYLYSPEEQLS 653

Query: 647 --EKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF--------SFGSKYKRIFSNR 696
              ++E    G+    +   ++  R  +    ++  SIF        +      R+  N+
Sbjct: 654 FITETELRLGGTPAADETEEQKKERTAELARHIDLVSIFEAANCQELTAELAAHRLRPNQ 713

Query: 697 IEENYLTILSLICNGDKI---KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
           + ++       +  GD            L   +   G+ G+ +QRYKGLGEMNA QLWET
Sbjct: 714 VFDSGTGAKYTVKAGDNQPENPANSLEELFKLVRQNGQAGLRIQRYKGLGEMNAEQLWET 773

Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           T++P TR++++V++ DA +AD +F+ LMGD VEPRRE+I++++     LDI
Sbjct: 774 TMDPATRTMIKVRMEDAVEADQIFNLLMGDVVEPRREYIEKHAAGVKDLDI 824


>gi|152989756|ref|YP_001355478.1| DNA gyrase subunit B [Nitratiruptor sp. SB155-2]
 gi|151421617|dbj|BAF69121.1| DNA gyrase subunit B [Nitratiruptor sp. SB155-2]
          Length = 774

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/806 (43%), Positives = 492/806 (61%), Gaps = 39/806 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++   Y A+ I++LKGL+AV+KRP MYIGDT    GLHH+IYEV+DNAIDE++ GY + I
Sbjct: 1   MEKQQYGAEKIKVLKGLEAVRKRPGMYIGDTS-VKGLHHLIYEVVDNAIDEAMAGYCNKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS-YKVSGGLHGV 123
            +TL  DGS  +SDNGRGIP D+H  E I AA V++T LHAGGKF   S YKVSGGLHGV
Sbjct: 60  DITLTKDGSARISDNGRGIPVDIHPTEKIPAATVVLTVLHAGGKFGGDSAYKVSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L + IKR+G I+   F  GI    LV  G     TGT + F P  +IF 
Sbjct: 120 GVSVVNALSKKLIMTIKRDGKIWRQEFERGIPITDLVAIGET-RQTGTTIEFWPDEEIFE 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F +D L  R +EL++LN ++ I+  D+R           +GG+  FV   D + K  
Sbjct: 179 TTEFKFDILSRRFKELAYLNPNITITFKDERVNTKEVYHF--EGGLRQFVE--DLNTKEA 234

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +   I      D++ +D+A+ +N G+ E V  F NNI   +GGTH SG R+ LTR I++Y
Sbjct: 235 LTKTIYFHDKVDDVEVDIALLYNSGFDEKVFSFVNNIRTPEGGTHESGFRAGLTRAISNY 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           + ++  +K+    + G+D REG  +V+S+K+P+P+F  QTK KL SS VR + +    + 
Sbjct: 295 IAQNANAKEKNVKITGEDVREGLVAVISVKVPEPQFEGQTKGKLGSSYVRPITQKLTYEK 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ + EE+PL+AK I+ K L A+  R+AA++AR+L RRK  + + +LPGKLADC  +DP 
Sbjct: 355 LTKYFEENPLDAKAIMNKALAAARGREAAKKARELVRRKDSMSVGTLPGKLADCQSKDPS 414

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+L S+EI  +ITALG 
Sbjct: 415 ISELFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILKSEEIKNIITALGC 474

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG++ FD  KLRYHKIIIMTDADVDG+HI+TLLLTFFFR +  ++  G+LY+ +PPLY 
Sbjct: 475 GIGEE-FDEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLYPVVEKGYLYMAQPPLYR 533

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
             +GK   Y+KD+  L  +LI   +   +         I + DL +F+        ++KD
Sbjct: 534 YKKGKKEVYLKDDTELNQFLIENGVDTLLSEVN-----IGRYDLIDFLKLVAHYRMVLKD 588

Query: 604 FYPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
               +      +  IE   ++ + N E  Q+I   L  K  N LN             I+
Sbjct: 589 LEKRYSLIEVVRYLIENRDLAALDNSELYQKIGTFLEQKNYNILNK-----------HID 637

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +  I +        E+ +++     +           +IE+            +++K   
Sbjct: 638 DEKIHLYVQTEEGLEEIIIDDELFTNPYFVEGVYIFEKIEDRVP---------EELKEKD 688

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              +L+ +    +KG  +QRYKGLGEMN  QLWETT++P+ R LLRV + +A  A D+FS
Sbjct: 689 LMEILEKVEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPENRRLLRVTVENAEHASDVFS 748

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
             MGDEVEPR+++I+E++     LD+
Sbjct: 749 LFMGDEVEPRKKYIEEHAKDVKHLDV 774


>gi|153951349|ref|YP_001397276.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938795|gb|ABS43536.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. doylei 269.97]
          Length = 769

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/803 (43%), Positives = 497/803 (61%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ G+ D I V
Sbjct: 2   QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E +    V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R   IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 121 VVNALSKKLVATVERNKEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPVEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
            K   Y+KDE++L +YLI   +             I  NDL++++        ++KD   
Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE + +    N E    I   L ++  N LN    ++E           
Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
               +   G++E  V+          +      ++I++  L                   
Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRGLEFD-----------KDILE 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L+ + +  +KG ++QRYKGLGEMN  QLWETT++P  R LL++ I DA  A+D F+  M
Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR++IQ ++     LD+
Sbjct: 747 GDEVEPRRDYIQVHAKDVKHLDV 769


>gi|187250428|ref|YP_001874910.1| DNA gyrase subunit B [Elusimicrobium minutum Pei191]
 gi|186970588|gb|ACC97573.1| DNA gyrase, B subunit [Elusimicrobium minutum Pei191]
          Length = 825

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/832 (43%), Positives = 514/832 (61%), Gaps = 36/832 (4%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ ++     +YD+  IQ+L+GL+AV+KRP+MYIG T G  GLHH++YEV+DN++DE L
Sbjct: 1   MTEEVKEKEQKNYDSSKIQVLEGLEAVRKRPAMYIGST-GLPGLHHLVYEVVDNSVDEIL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLH------KEEGISAAEVIMTRLHAGGKFNQ 111
            G A  I+VT+  D +C+V+D+GRGIP D        K +G SA EV+MT LHAGGKF+ 
Sbjct: 60  AGGATKISVTIKDDMTCSVADDGRGIPVDPMVNAKDPKLKGKSALEVVMTVLHAGGKFDS 119

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGVS VNALS +L++ + ++G  Y   +  G  +  +   G+A  + GT
Sbjct: 120 GAYKVSGGLHGVGVSCVNALSEYLEVVVNKDGKQYFQRYHRGKPEEKVKEIGAAK-EKGT 178

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            VTF   ++IF    F+YDT+ +RLREL+FLN+ V+I L D+R  EP+  T FY+GGI  
Sbjct: 179 TVTFKADTEIFGELSFSYDTIANRLRELAFLNAGVKIILTDERGDEPKTHTFFYEGGISQ 238

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y++ +K  L   PI +    +N  I  A+++ND Y EN+  F NNI   +GGTHLSG
Sbjct: 239 FVKYINSNKTTLHAEPIYLTKEINNNYISFAIQYNDSYSENIYSFVNNINTIEGGTHLSG 298

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RS+LTR I  Y++ +   K  + +V GDD REG T+VLS+K+P P+F  QTK KL +SE
Sbjct: 299 FRSSLTRVINEYIKDNGLLKNKEVNVTGDDMREGLTAVLSVKIPHPQFEGQTKTKLGNSE 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +  +V S V D L+ + EE+P  AK + +K + A++ R+AAR+ARDLTRRK  L+   LP
Sbjct: 359 IEGIVRSMVGDALTTFFEENPKTAKAVCEKCIGAAVAREAARKARDLTRRKSALEGGGLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ER  ++ ELF+VEG+SAGGSAKQGR R  QAILPLRGK+LNVE+A+  K+LS+
Sbjct: 419 GKLADCQERVAERCELFIVEGNSAGGSAKQGRDRVFQAILPLRGKVLNVEKAQLVKILSN 478

Query: 472 QEIGTLITAL--GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           +EI TL TAL  G G G+  FDI++LRYHKI++M DADVDG HI TLLLTFF+RQ+  LI
Sbjct: 479 EEIRTLFTALGTGVGEGEGGFDISRLRYHKIVLMADADVDGQHITTLLLTFFYRQLRPLI 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G +YI +PPLY + +GK+ QY++ EE L ++L  + ++    +  D K  ++  +L++
Sbjct: 539 EAGHVYIAQPPLYKVKKGKNEQYLQTEEQLVNWLSKEGINSTSVVKAD-KTALTAVELKD 597

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
            +     ++ L+           I         N        + L S          E  
Sbjct: 598 LLKILKDVEDLLMKIEVKG----ITLNEFLSFVNAGQIPLYRIPLQSGGFRYFYTEKEYG 653

Query: 650 EKSWHGSINNSDILVKR---IARGVQEQFVLEGSSIFSFGS-----KYKRIFSNRI---- 697
           + +    +   ++L+     I+    E    E  S+F FG         + F   +    
Sbjct: 654 DYAAQYILERKEVLMAEGADISMLSDEDLAPEHQSLFEFGKLLAADTKLKAFGYSLANYQ 713

Query: 698 -----EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWE 752
                +E    + ++      + +     L  T+   G  G ++QRYKGLGEMN  QLWE
Sbjct: 714 DAVSEDEKKNPLFTVNTGKSDVFVYSLHELFKTVKDAGSSGSTIQRYKGLGEMNPEQLWE 773

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           TT++P  RSL++V+I DA+ A+ +F+ LMGD+VEPRR FI+ ++L    LDI
Sbjct: 774 TTMDPAKRSLIKVEIQDAADAEQIFTTLMGDKVEPRRAFIESHALEVKNLDI 825


>gi|291276246|ref|YP_003516018.1| DNA gyrase subunit B [Helicobacter mustelae 12198]
 gi|290963440|emb|CBG39269.1| DNA gyrase subunit B [Helicobacter mustelae 12198]
          Length = 772

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/800 (41%), Positives = 491/800 (61%), Gaps = 29/800 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++N  Y A +I++LKGL+AV+KRP MYIGDT+  +GLHHMIYEV+DN+IDE++ G+   I
Sbjct: 1   MENKDYGASNIKVLKGLEAVRKRPGMYIGDTN-VNGLHHMIYEVVDNSIDEAMAGHCSQI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            +TL  +GS  + D+GRGIP D+H  E + AA V++T LHAGGKF++ +YKVSGGLHGVG
Sbjct: 60  KITLTQEGSAIIEDDGRGIPVDMHPTEKLPAATVVLTVLHAGGKFDKDTYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L + IK+ G IY   F  GI    L + G    + GT + F P  ++  +
Sbjct: 120 VSVVNALSKRLIMTIKKNGYIYRQEFAKGIPQTDLEIIGKTK-EHGTTIEFFPDGEVMEI 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+ + L  R +E+++LN +V +   ++++   +      + G+  FV  +  +KKP +
Sbjct: 179 LEFDAEILIKRFKEMAYLNQNVTLFFKEEKTGREQVFHF--ENGLHQFVEDM--NKKPFI 234

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I  + + ++  I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R I +Y+
Sbjct: 235 SPIISFKANEEDTEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAILNYI 294

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E +  +++    + G+D REG  +++S K+ +P+F  QTK KL SS V+ +V+    + L
Sbjct: 295 EANASAREKDAKIQGEDVREGLVAIISAKIMEPQFEGQTKGKLGSSFVKPIVQKLTFEKL 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + EE+P EAK I++K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP++
Sbjct: 355 AKFFEENPNEAKKIMQKALLAARGREAAKKARELTRKKDSLSVGTLPGKLADCQSKDPRE 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S EI  +ITA G G
Sbjct: 415 SEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSDEIKNMITAFGCG 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI NG +YI +PPLY  
Sbjct: 475 IGEE-FDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLIENGHIYIAQPPLYRF 533

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK   Y+KDE++L +YLI   +             I   +L   +        ++K+ 
Sbjct: 534 KKGKKEIYLKDEKALSEYLIENGIENFHFQ------GIGSQELLEILRYISHYRGILKEI 587

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
             ++        +    F  E+   I++  A        F+          +I+   I +
Sbjct: 588 QKHY------SMIEVIKFLIENRDFISLPFAELYEKIEVFLQSIDCNILSKNISEQQITL 641

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
               +    + V++ +   +   +      N+I E    +  L              LL+
Sbjct: 642 YIQTKTGLVELVIDENLFSNTFFEEAYFIHNKIMER--DLSFLEGR-------DLIDLLE 692

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            I    +KG  +QRYKGLGEMN  QLWETT+ P  R+LL+V + D   AD++F+  MGDE
Sbjct: 693 EIEESAKKGAYIQRYKGLGEMNPEQLWETTMTPSNRTLLKVALEDEESADEIFTLFMGDE 752

Query: 785 VEPRREFIQENSLPSA-LDI 803
           VEPRR +IQEN+     LDI
Sbjct: 753 VEPRRAYIQENAKNVKHLDI 772


>gi|153002883|ref|YP_001377208.1| DNA gyrase subunit B [Anaeromyxobacter sp. Fw109-5]
 gi|152026456|gb|ABS24224.1| DNA gyrase, B subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 795

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/802 (45%), Positives = 499/802 (62%), Gaps = 24/802 (2%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           L+GL+AV+KRP MYIGD  GE GLHH++YEV+DN++DE++ G A+ ITVT++ D S T+ 
Sbjct: 2   LEGLEAVRKRPHMYIGDV-GERGLHHLVYEVVDNSVDEAMAGRANEITVTIHADSSITIV 60

Query: 78  DNGRGIPTDLHK-EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
           DNG GIP   H   +G+   +V++T+LHAGGKF   +YKVSGGLHGVGV+ VNALS WLK
Sbjct: 61  DNGSGIPIGPHPSVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLK 120

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
             + REG ++   +  G     +   G      GT++TF P + IF V +F+++TL  RL
Sbjct: 121 AEVYREGKVWLQRYDRGTPAGKVTAVGET-QRRGTKITFKPDATIFEVTEFSFETLSGRL 179

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR----IQG 252
           REL+FLN+ + I++ D+RS +  E    +K GI  FV YL++ +  L Q PI     ++ 
Sbjct: 180 RELAFLNAGLTITIEDERSGKKHE--FLFKDGIREFVGYLNKSRDVLFQPPISLRQEVET 237

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-GSK 311
            R    +++A++WNDGY E V  F NNI   +GGTHL G ++ALTR I +Y +K+     
Sbjct: 238 ERGTALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKNNLFKD 297

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
                  GDD REG  +V+SI++P   F  QTK KL ++E +S+VE+ +N+ L A+LEE+
Sbjct: 298 LKDELPSGDDMREGLAAVISIRLPGASFEGQTKTKLSNTEAKSMVETMLNERLGAFLEEN 357

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P  AK +  KV +A+  R AAR+AR+  RRKG LD ASLPGKLADC  RDP++SELF+VE
Sbjct: 358 PNVAKRVCAKVAEATRARIAARKARETVRRKGALDGASLPGKLADCQSRDPRESELFIVE 417

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR R  QAILPLRGKILNVE+ARFDKMLSS EI T+ITALGTGIG + +D
Sbjct: 418 GDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLSSAEIATMITALGTGIGPEEYD 477

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           ++K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP L+  G+LYI +PPLY + +GK   
Sbjct: 478 VSKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELVEKGYLYIAQPPLYRVQKGKKES 537

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           Y+KDE +L+D+L+     +   +  D   V+   DL+    DA++   L+       D  
Sbjct: 538 YLKDEAALDDFLLQLGTEKAKLVAGDL--VVEGADLKRLAQDAIRYRGLLARVDRRRDSR 595

Query: 612 FIEQAVISGVFNCESDQEINV---------SLASKLANRLNFIAEKSEKSWHGSINNSDI 662
            ++ AV  G  + E  +               A KL   L     K E+          +
Sbjct: 596 IVDAAVQLGDLDLELLKHHEQVKEQVQKIFDKAQKLHPELEVRLAKIER--DEEHGCDAL 653

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           + +    G      ++   +              + E       L     + ++      
Sbjct: 654 VFQTTMSGATRTTRIDFDYLSGPEWGELAGLYGELAELGAGPHKLRTGDGEEEVDDVFGA 713

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           ++ +      G ++QRYKGLGEMN  QLWETT++   R+LL+V++ D  +AD++FS LMG
Sbjct: 714 VEVLKRAATAGQTIQRYKGLGEMNPEQLWETTMDHARRTLLQVRVDDTVEADEVFSVLMG 773

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D VEPRREFI++++L    LDI
Sbjct: 774 DAVEPRREFIEKHALDVQNLDI 795


>gi|303256368|ref|ZP_07342382.1| DNA gyrase, B subunit [Burkholderiales bacterium 1_1_47]
 gi|331001506|ref|ZP_08325124.1| DNA gyrase, B subunit [Parasutterella excrementihominis YIT 11859]
 gi|302859859|gb|EFL82936.1| DNA gyrase, B subunit [Burkholderiales bacterium 1_1_47]
 gi|329568235|gb|EGG50052.1| DNA gyrase, B subunit [Parasutterella excrementihominis YIT 11859]
          Length = 836

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/838 (46%), Positives = 531/838 (63%), Gaps = 42/838 (5%)

Query: 1   MSDNI--QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M D       SY  D+IQ+L+GL+AV+KRP MYIGDT   +GLHH+++EV+DN+IDE+L 
Sbjct: 4   MQDKNYSAEESYGEDAIQVLEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALA 63

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSY 114
           GYAD I VT+N D S TV DNGRGIPTD+      E   SAAE+ +T LHAGGKFNQ SY
Sbjct: 64  GYADHINVTINRDESITVVDNGRGIPTDVKMSDKHEPKRSAAEIALTELHAGGKFNQNSY 123

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI-----------LDNPLVV-- 161
           KVSGGLHGVGVS VNALSSWLKL ++REG  + ++F  G+              P+ +  
Sbjct: 124 KVSGGLHGVGVSCVNALSSWLKLTVRREGVEHYLNFKKGVLQDRLTEKVQTPTGPVEISP 183

Query: 162 --TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
                A +  GTEV FLP ++IF   DF+Y+ L  RLRELSFLN+ V+I L D R  +  
Sbjct: 184 MHVSGATDRRGTEVQFLPDAEIFGTVDFHYEVLSSRLRELSFLNNGVKIHLADLRKGKD- 242

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-----RDNISIDLAMRWNDGYHENVL 274
                + GG+  FV +++R K  +  +      +      +NI++++AM+W DGY EN L
Sbjct: 243 -EVFQFAGGVSGFVDFINRDKTKIHDNCFYTNKTVTVNPEENINVEVAMQWTDGYTENFL 301

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            +TNNIPQKDGGTH++GLRSA+T  I  Y+E+S  +KK+K  + G+D REG T VLS+KM
Sbjct: 302 AYTNNIPQKDGGTHVNGLRSAMTAVIKRYIEESEFAKKEKIDLTGEDIREGLTCVLSLKM 361

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+FSSQTK+KLVSSE R  VE  V   L ++L+E+P +A+II +K++DA+  R+AAR+
Sbjct: 362 PEPKFSSQTKDKLVSSEARPAVEQVVRTALESYLQENPKDARIICEKIMDAARAREAARK 421

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+ TRRKG+L  A LPGKLADCSERD    E+FLVEGDSAGGSAKQGR R  QAILPLR
Sbjct: 422 ARETTRRKGLLGSAGLPGKLADCSERDRSLCEVFLVEGDSAGGSAKQGRDRSFQAILPLR 481

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK+LNVE+AR +K++SS++I TLI ALGT IG D FD++KLRY ++IIMTDADVDGAHIR
Sbjct: 482 GKVLNVEKARIEKLISSEQIATLIAALGTSIG-DEFDLDKLRYDRVIIMTDADVDGAHIR 540

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           TLLLT F+RQMP LI  G +YI +PPLY +  G+  +Y+KD++ L  +L++Q ++     
Sbjct: 541 TLLLTLFYRQMPKLIEGGHVYIAQPPLYKVEYGQKTKYIKDDKELYTFLVDQGITGTNLY 600

Query: 575 FC----DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
                 ++K  IS + L+ +         +I  F    D + +         +  SD+  
Sbjct: 601 VSKEAFENKQGISGDKLKEYFLAYSDAQNIISKFSRFVDASVLTAIAAGATIDLSSDKAA 660

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690
             S+   +A   +         +    N   I+VKR   G   +  +  + I +      
Sbjct: 661 ADSIEKLVAKITDPAISL---GYAVEENIPTIIVKRTHFGNIIESRITPAFIETPDYLTL 717

Query: 691 RIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGI-SMQRYKGLGEM 745
              S   +        L+           I+     +  I  IG+ G+  MQRYKGLGEM
Sbjct: 718 TAASVTFKNLLHEGACLVRTTNNKETIQPISNFSEAISFILKIGKAGVKKMQRYKGLGEM 777

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            A +L ETT++P  RSLL+V+I DA  AD +F++LMGDEVEPRR FI++N+L +  +D
Sbjct: 778 KAEELEETTMDPTKRSLLKVRIEDAIAADQVFTKLMGDEVEPRRRFIEDNALLAGNID 835


>gi|182412481|ref|YP_001817547.1| DNA gyrase, B subunit [Opitutus terrae PB90-1]
 gi|177839695|gb|ACB73947.1| DNA gyrase, B subunit [Opitutus terrae PB90-1]
          Length = 861

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/849 (41%), Positives = 494/849 (58%), Gaps = 58/849 (6%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +YDA  IQ L+GL+ V+KRP MYIGDT+ E GLHH ++EV+DN++DE+L G+A +I VT
Sbjct: 18  EAYDASKIQKLEGLEGVRKRPDMYIGDTN-ERGLHHCVFEVVDNSVDEALAGFASLIVVT 76

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +++DGSC++ D+GRGIP D+H    I A E+++T LHAGGKF + +Y+VSGGLHGVG   
Sbjct: 77  IHLDGSCSIEDDGRGIPVDMHPVYKIPALELVLTNLHAGGKFGKGAYQVSGGLHGVGAKC 136

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNA+S W +  ++R G +Y+M F  GI    + V G     TGT++TF P  +IF     
Sbjct: 137 VNAVSEWFEAEVRRGGKVYQMRFEQGITTQKMQVIGDTK-KTGTKITFKPDPEIFKTTRE 195

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+ L  RLREL+FLN  V I L D+RS +      +++ GI  FV YL+++K  +   
Sbjct: 196 FQYEILSKRLRELAFLNPGVHIELADERSQKG--DRFYFRDGITEFVRYLNQNKNVVHDK 253

Query: 247 PIRIQGSR--------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           PI    S          NI +D++M++ND Y++ V  + N+I   +GGTHLSG R+ALTR
Sbjct: 254 PITFSDSVPNETNAALPNIVVDVSMQYNDSYNDQVFAYANSIYNIEGGTHLSGFRTALTR 313

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + ++   +   K+   S+ GDD REG  +V+S+K+P+PRF  QTK KL + E+  +V+ 
Sbjct: 314 VVNNFARANNLLKEKDPSITGDDVREGLVAVISVKVPEPRFEGQTKTKLSNGEIDGIVQR 373

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + L  + E +   AK I+ K    +     A R    T RKG L    LPGKLADCS
Sbjct: 374 IVGEKLRFYFEANTNIAKRIIDKT-LNAARAREAARKARETVRKGALSGGGLPGKLADCS 432

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ERDP   EL++VEGDSAGGSAKQGR R  QAILPLRGK++NVE+AR DK+L+++EI TLI
Sbjct: 433 ERDPALCELYIVEGDSAGGSAKQGRDRRYQAILPLRGKVINVEKARLDKVLANEEIRTLI 492

Query: 479 TALGTGIGQDS----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           TA GTGIG       FD +K RYHK+IIMTDADVDG+HIRTLLLTF +RQM  L   GF+
Sbjct: 493 TAFGTGIGDHEGDGAFDGDKARYHKVIIMTDADVDGSHIRTLLLTFLYRQMRGLFDRGFV 552

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLY I R K  QY+ +++ L   L+     + +      + V +   +   +++ 
Sbjct: 553 YIAQPPLYKIKRKKREQYIDNDDQLNRILLELGSEDVVLTRIADQHVFAPAQIDKIVENL 612

Query: 595 LKIDKLIKDFYP-------------NHDKTFIEQAVISGVFNCESDQEINVSLA-SKLAN 640
             ++KL                   +               N ES + +    A SK   
Sbjct: 613 AALEKLGAGVTRYGAALSEYLDQQDHVTHALPRYIARIREGNKESHEFLRDEAARSKFVQ 672

Query: 641 RLNFIAEKSEKSWHGSIN----NSDILVKRIARGVQE----------QFVLEGSSIFSFG 686
                A+  E+  +   N     S + V     GV E          +  L      +  
Sbjct: 673 DHGLDADMFEQPDNVVPNGTGTASGLPVNGTTAGVNEPPRKPAATPKRITLHEIFESTEM 732

Query: 687 SKYKRIFSNRIEEN-----------YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735
           +K  +  +    E             +T  +   +  +I++  P  ++  I + GRKG+S
Sbjct: 733 AKLLKAIAATGLEINRFGATEEARYLITENAGQKSESRIELHSPLEIVTEIRANGRKGLS 792

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  QL+ETT++P+ R LL+V I DA++AD LF+ LMGDEV PRR+FI++N
Sbjct: 793 IQRYKGLGEMNPKQLFETTMDPEKRRLLKVSINDAAKADALFTLLMGDEVPPRRQFIEDN 852

Query: 796 SLPSA-LDI 803
           +L    LD+
Sbjct: 853 ALNVQYLDV 861


>gi|319957711|ref|YP_004168974.1| DNA gyrase subunit b [Nitratifractor salsuginis DSM 16511]
 gi|319420115|gb|ADV47225.1| DNA gyrase subunit B [Nitratifractor salsuginis DSM 16511]
          Length = 771

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/798 (44%), Positives = 484/798 (60%), Gaps = 30/798 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A +I++LKGL+AV+KRP MYIGDT    GLHH+IYEV+DN+IDE++ GY D I VT
Sbjct: 2   AEYGAGNIKVLKGLEAVRKRPGMYIGDTS-VKGLHHLIYEVVDNSIDEAMAGYCDKIKVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GS  + DNGRGIP   H  E I AA V++T LHAGGKF++ +YKVSGGLHGVGVSV
Sbjct: 61  LTGEGSAIIEDNGRGIPVAEHPTEKIPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186
           VNALS  L L + REG +YE  F  GI   PL VTG     TGT++ F P   IF+   +
Sbjct: 121 VNALSEKLHLTVFREGQVYEQWFEKGIPVTPLEVTGKT-RKTGTKIEFWPDHTIFTETVE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F  + L  R +EL++LNS + I   D+R+          +GGI  FV  +    K L+ S
Sbjct: 180 FKDEILTKRFKELAYLNSRITIDFKDERNGLKESYHF--EGGIRQFVEDMHT--KELLSS 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P   +G  D+I +DLA  + +   + V+ F NNI   DGGTH +G R+ LTR I++Y+ K
Sbjct: 236 PQLFEGKADDIEMDLAFMYQNADSDKVISFVNNIKTADGGTHEAGFRAGLTRAISNYISK 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +K+    + GDD +EG  +V+S+++P+P+F  QTK KL SS VR +V+ F  + +S 
Sbjct: 296 NANAKERNTKISGDDTKEGLVAVVSVRVPEPQFEGQTKGKLGSSYVRPLVQKFTYERISK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P+EAK I+  VL A+  R+AA+RA+DL +RK  + + +LPGKLADC  +DP  SE
Sbjct: 356 YLEENPIEAKAIMNHVLLAAKGREAAKRAKDLVKRKDSMSVGTLPGKLADCQSKDPGISE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR +K+L S EI  +ITALG GIG
Sbjct: 416 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLEKILKSDEIKNMITALGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D F+  KLRYHKIIIMTDADVDG+HI+TLL+TFFFR +  +I  G+LY+ +PPLY   +
Sbjct: 476 -DEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFFRFLRPVIEKGYLYLAQPPLYRYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK+  Y+KD+++L D+LI   +             + K DL             +K+   
Sbjct: 535 GKNETYLKDDKALNDFLIENGIDVL------ESESMGKQDLIELFKLVAYYQMTLKELDK 588

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
                 + + +I    + +   E N  LA+ L      I        + ++    I    
Sbjct: 589 RFALAEVIRYMIE---HPDMVGEENQKLAAALEEY---ILSLGYNILNRNVTEEKIHYYV 642

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
                 E+ +++     +          ++I E            D+ +      LLD I
Sbjct: 643 QTNEGLEELIVDDQLFTNPHYNEALYIYDKIRERLT---------DEFRDKDLLELLDKI 693

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
            +  RKG  +QRYKGLGEMN  QLWETT++P+ R LL++ I D  +AD  F   MGDEVE
Sbjct: 694 LASARKGAYIQRYKGLGEMNPEQLWETTMDPENRRLLQITIEDFEEADKTFMLFMGDEVE 753

Query: 787 PRREFIQENSLPSA-LDI 803
           PRR +I+ ++     LD+
Sbjct: 754 PRRNYIETHAKDVKHLDV 771


>gi|297621239|ref|YP_003709376.1| DNA gyrase subunit B [Waddlia chondrophila WSU 86-1044]
 gi|297376540|gb|ADI38370.1| DNA gyrase subunit B [Waddlia chondrophila WSU 86-1044]
          Length = 822

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/823 (42%), Positives = 513/823 (62%), Gaps = 28/823 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y+A SI +L+GL AV++RP MY+GDT   SGLH ++YEV+DN+IDE++ G+   I V
Sbjct: 2   SKEYNASSITVLEGLQAVRERPGMYVGDTS-TSGLHQLVYEVVDNSIDEAMAGHCSEIYV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            +N DGS T+ DNGRGIP   H++E       +SA EV+MT LHAGGKF++++YKVSGGL
Sbjct: 61  IINADGSITLEDNGRGIPIQKHEKESQKQGREVSALEVVMTTLHAGGKFDKETYKVSGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS V ALSS + + + ++G ++EM F  G +   L   G+     GT +TF P   
Sbjct: 121 HGVGVSCVCALSSKMIVNVYKDGRVWEMHFSQGKVIKSLADMGATSKK-GTRITFWPDET 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           + +V +F+YD L  RLREL+FLN  + I   D+R  +  ++   Y GG+++FVSYL+ +K
Sbjct: 180 VMTVTEFDYDILAKRLRELAFLNRGISIFFQDERHDDKDDVNFRYDGGLKSFVSYLNENK 239

Query: 241 KPLMQSPIRI----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
             +   PI      +G    I I++AM+WNDGY+E +  + NNI    GGTHL+G  +AL
Sbjct: 240 NAIFPEPIYFYGTREGDDGPIDIEVAMQWNDGYNETIFSYVNNISTAHGGTHLTGFSTAL 299

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++     + DK  + G+D REG T+V+S K+ +P+F  QTK++L +S+V SVV
Sbjct: 300 TRVLNNYIKTHNLLRSDKIGISGEDMREGLTAVISAKVANPQFEGQTKQRLGNSDVGSVV 359

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +    + L  +L+EHP  AK I  K + A+  R+AAR+AR+LT RK  LD A LPGKL D
Sbjct: 360 QQITGEELGIFLDEHPSIAKTISDKAILAAKAREAARKARELTLRKSALDSARLPGKLTD 419

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ER+P+  EL++VEGDSAGGSAK GR R  QAILP+RGKILNVE+AR +K+L + E+GT
Sbjct: 420 CQERNPELCELYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLQNTEVGT 479

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I+ALG GIG + FD+ KLRYHKIIIMTDADVDG+HIRTLLLTFF+R MP+L+ N  +YI
Sbjct: 480 IISALGCGIGTEGFDLGKLRYHKIIIMTDADVDGSHIRTLLLTFFYRHMPALVENNHIYI 539

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY +TR KS QY+  E+ +++YL+   +S+ +      +  + K  +   ++  + 
Sbjct: 540 AQPPLYLVTRKKSKQYIHSEKEMDEYLLKLGISDIVLKKETDEQPMDKESVEALMNVIVD 599

Query: 597 IDKLIKDFYPNHD--KTFIEQAVISG---VFNCESDQEINVSLASKLANRLNFIAEKSEK 651
           ++  +          + F+E     G    F  E+ +    + +S     L    E+++K
Sbjct: 600 LESFLTRIEKKGMSFREFLEAKNEEGQYPRFQIETVEGFRFAYSSDEFEALKTADEEAQK 659

Query: 652 SWHGS----------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
             H             ++  +   +    ++         + +    +   F N +  N 
Sbjct: 660 LQHEQKLASMPEAEITDDMRVFKAKRLHFIELYEPENLEKLINRIKPFNFSFENYLLVNG 719

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
             +     NG+ +       ++D I   GRKGI +QRYKGLGEMNA QLWETT++P+ R+
Sbjct: 720 PLLTVRTENGEDVLCHTLREVIDLIRDNGRKGIEIQRYKGLGEMNADQLWETTMDPEKRT 779

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L++V + DA  AD +F+ LMGDEV PRR FI++++L    LDI
Sbjct: 780 LIKVTLPDAVAADHMFTMLMGDEVPPRRAFIEQHALSVKDLDI 822


>gi|315639365|ref|ZP_07894527.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter
           upsaliensis JV21]
 gi|315480691|gb|EFU71333.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter
           upsaliensis JV21]
          Length = 770

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/804 (44%), Positives = 496/804 (61%), Gaps = 42/804 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y   +I++LKGL+AV+KRP MYIGDT+  +GLHHMIYEV+DN+IDE++ G+ D I +
Sbjct: 2   QENYGEGNIKVLKGLEAVRKRPGMYIGDTN-INGLHHMIYEVVDNSIDEAMAGHCDTIDI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  +GSC VSDNGRGIP  +H  E +    V++T LHAGGKF+Q +YKVSGGLHGVGVS
Sbjct: 61  ELTTEGSCIVSDNGRGIPVGMHPTENMPTLTVVLTVLHAGGKFDQDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++REG IY   F  G + +   + G +   TGT + F P  +IF + +
Sbjct: 121 VVNALSKKLVATVQREGKIYRQEFAKGQIASEFGIIGESK-KTGTSIEFFPDEEIFELTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R    R  +  ++GGI  FVS  D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVG--RNESFHFEGGISQFVS--DLNKKQALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI      DN+++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR IT+YVE 
Sbjct: 236 PIFFSVDEDNVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHETGFRMGLTRVITNYVEA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +++S+K+P+P+F  QTK KL SS VR +V     + LS 
Sbjct: 296 NASAREKDNKITGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVRPIVNKASFEYLSK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERAFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD+ KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLTKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYRYKK 534

Query: 547 GKS-LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           G+    Y+KDE++L ++LI   +         +   I  NDL++F+        ++KD  
Sbjct: 535 GQKREIYLKDEKALNEFLIEVGIE------NSNYEGIGLNDLKDFLKIVAAYRSVLKDLE 588

Query: 606 PNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
              +     +  IE   +    N E  + I   L  +  N LN    ++E   +    + 
Sbjct: 589 KRFNVISVIRYLIENPDLIKNSNEELFKIIKAFLEKQGHNILNSYLNENELRIYVQTESG 648

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
                       E+ ++                  +I+E  L                  
Sbjct: 649 -----------LEELIINDDLFSHPLYTEASYIFTKIKERELNFE-----------RDIL 686

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            +LD +    +KG  +QRYKGLGEMN  QLWETT++P  R LL++ I DA +ADD F+  
Sbjct: 687 DILDEVEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPSIRRLLKITIEDAKRADDTFNLF 746

Query: 781 MGDEVEPRREFIQENSLPSA-LDI 803
           MGDEVEPRR++IQ ++     LD+
Sbjct: 747 MGDEVEPRRDYIQAHAKDVKHLDV 770


>gi|57506226|ref|ZP_00372145.1| DNA gyrase, B subunit [Campylobacter upsaliensis RM3195]
 gi|57015494|gb|EAL52289.1| DNA gyrase, B subunit [Campylobacter upsaliensis RM3195]
          Length = 770

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/804 (44%), Positives = 496/804 (61%), Gaps = 42/804 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y   +I++LKGL+AV+KRP MYIGDT+  +GLHHMIYEV+DN+IDE++ G+ D I +
Sbjct: 2   QENYGEGNIKVLKGLEAVRKRPGMYIGDTN-INGLHHMIYEVVDNSIDEAMAGHCDTIDI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  +GSC VSDNGRGIP  +H  E +    V++T LHAGGKF+Q +YKVSGGLHGVGVS
Sbjct: 61  ELTTEGSCIVSDNGRGIPVGMHPTENMPTLTVVLTVLHAGGKFDQDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++REG IY   F  G + +   + G +   TGT + F P  +IF + +
Sbjct: 121 VVNALSKKLVATVQREGKIYRQEFAKGQIASEFGIIGESK-KTGTSIEFFPDEEIFELTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R    R  +  ++GGI  FVS  D +KK  +  
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVG--RNESFHFEGGISQFVS--DLNKKQALTK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI      DN+++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR IT+YVE 
Sbjct: 236 PIFFSVDEDNVNVEIALLYNDTYSENLLSFVNNIKTPDGGTHETGFRMGLTRVITNYVET 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +++S+K+P+P+F  QTK KL SS VR +V     + LS 
Sbjct: 296 NASAREKDNKITGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVRPIVNKASFEYLSK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L I +LPGKLADC  +DP +SE
Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSIGTLPGKLADCQSKDPSESE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++I  +ITA G GIG
Sbjct: 416 IYLVEGDSAGGSAKQGRERAFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD+ KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M  L+ NG +Y+ +PPLY   +
Sbjct: 476 ED-FDLTKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYRYKK 534

Query: 547 GKS-LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           G+    Y+KDE++L ++LI   +         +   I  NDL++F+        ++KD  
Sbjct: 535 GQKREIYLKDEKALNEFLIEVGIE------NSNYEGIGLNDLKDFLKIVAAYRSVLKDLE 588

Query: 606 PNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
              +     +  IE   +    N E  + I   L  +  N LN    ++E   +    + 
Sbjct: 589 KRFNVISVIRYLIENPDLIKNSNEELFKIIKAFLEKQGHNILNSYLNENELRIYVQTESG 648

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
                       E+ ++                  +I+E  L                  
Sbjct: 649 -----------LEELIINDDLFSHPLYTEASYIFTKIKERELNFE-----------RDIL 686

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            +LD +    +KG  +QRYKGLGEMN  QLWETT++P  R LL++ I DA +ADD F+  
Sbjct: 687 DILDEVEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPSIRRLLKITIEDAKRADDTFNLF 746

Query: 781 MGDEVEPRREFIQENSLPSA-LDI 803
           MGDEVEPRR++IQ ++     LD+
Sbjct: 747 MGDEVEPRRDYIQAHAKDVKHLDV 770


>gi|3510605|gb|AAC33551.1| gyrase subunit B [Chlamydia trachomatis]
          Length = 796

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/808 (44%), Positives = 503/808 (62%), Gaps = 27/808 (3%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNM 70
            A  I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+   + V +  
Sbjct: 1   SASVITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILE 59

Query: 71  DGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           DG  ++SDNGRGIP  +H++E       ISA EV++T LHAGGKF++ SYKVSGGLHGVG
Sbjct: 60  DGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALS     ++ ++G  Y M F  G     L V G   +  GTEV F P   IFS 
Sbjct: 120 VSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYPDPAIFST 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+   L  RLREL+FLN    I   D R     ++  FY+GGI++FVSYL+++K+ L 
Sbjct: 179 CVFDRAILMKRLRELAFLNRGATIVFEDDRDTGFDKVVFFYEGGIQSFVSYLNQNKEILF 238

Query: 245 QSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            +PI IQGSR     +I  + A++WN GY E +  + NNIP + GGTHL+G  +ALTR +
Sbjct: 239 PNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFSTALTRAV 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++    SK DK S+ G+D +EG  +++S+K+P+P+F  QTK+KL +S+V SV +   
Sbjct: 299 NSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVGSVSQQIS 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +LEE+P  AK IV KV  A+  R+AA+RAR+LT RK  LD A LPGKL DC E+
Sbjct: 359 GEVLTTFLEENPQIAKTIVDKVFVAAQAREAAKRARELTFRKSALDSARLPGKLIDCLEK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K+  +QEIG++I A
Sbjct: 419 DPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQEIGSIIAA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N  +YI +PP
Sbjct: 479 LGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENECVYIAQPP 538

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++  L+++  
Sbjct: 539 LYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNLILEVESF 598

Query: 601 IKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
           I            F++              E      S L +      E+ E +   +  
Sbjct: 599 IVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEAAIAANEE 653

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           ++  +++     V E+   +          Y     + I  +                  
Sbjct: 654 SASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KISPYVCYT 708

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA +AD +F+
Sbjct: 709 LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAVEADHIFT 768

Query: 779 RLMGDEVEPRREFIQENSLPS---ALDI 803
            LMG+EV PRREFI+ ++L      LDI
Sbjct: 769 MLMGEEVPPRREFIKSHALSIRMNNLDI 796


>gi|224418813|ref|ZP_03656819.1| DNA gyrase subunit B [Helicobacter canadensis MIT 98-5491]
 gi|253826663|ref|ZP_04869548.1| DNA gyrase, B subunit [Helicobacter canadensis MIT 98-5491]
 gi|313142332|ref|ZP_07804525.1| DNA gyrase subunit b [Helicobacter canadensis MIT 98-5491]
 gi|253510069|gb|EES88728.1| DNA gyrase, B subunit [Helicobacter canadensis MIT 98-5491]
 gi|313131363|gb|EFR48980.1| DNA gyrase subunit b [Helicobacter canadensis MIT 98-5491]
          Length = 772

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/805 (43%), Positives = 500/805 (62%), Gaps = 39/805 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++N  Y   SI++LKGL+AV+KRP MYIGDT+  +GLHH+IYEV+DN+IDE++ GY + I
Sbjct: 1   MENKQYSGSSIKVLKGLEAVRKRPGMYIGDTN-TNGLHHLIYEVVDNSIDEAMAGYCNEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           ++TL   GS  + DNGRGIP D+H  E I AA V++T LHAGGKF+Q SYKVSGGLHGVG
Sbjct: 60  SITLTQQGSAIIKDNGRGIPVDIHPTENIPAATVVLTVLHAGGKFDQDSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS  L++ I + G IY  +F  GI  + L + G    D GT + F+P   IF +
Sbjct: 120 ISVVNALSKSLQMTIHKNGKIYRQNFAQGIPQDELNIIGECK-DNGTIIEFIPDDSIFEI 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F  + L  R +EL++LN  V I   D+R           +GG+  FV+  D +KKPL+
Sbjct: 179 TEFQREILSKRFKELAYLNKQVTIHFKDERDGFNEIYHF--EGGLNQFVN--DLNKKPLI 234

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            + I  +G+ +++ I +A+ +N+G+ E VL F NNI   DGGTH SG R  LTR IT+Y+
Sbjct: 235 STIINFEGTENDVEIQIALAYNEGFEEKVLSFVNNIRTIDGGTHESGFRMGLTRVITNYI 294

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E +  +++    + G+D REG  +++S+K+ DP+F  QTK KL S+ VR +V+    + L
Sbjct: 295 EANANAREKDSKITGEDIREGLVAIVSVKVIDPQFEGQTKGKLGSAFVRPIVQKLTYEKL 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + EE+P EAK I++K L A+  R+AA++AR+LTR+K    + +LPGKLADC  +DP  
Sbjct: 355 AKFFEENPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQSKDPSI 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S+EI  LITALG G
Sbjct: 415 SEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLITALGCG 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D FDI K+RY+KIIIMTDADVDG+HI+TLL+TFFFR +  +I +G+LYI +PPLY  
Sbjct: 475 IGED-FDITKIRYNKIIIMTDADVDGSHIQTLLMTFFFRYLRGIIESGYLYIAQPPLYRF 533

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK   Y+KDE++L +YLI   +             I   DL  F          + + 
Sbjct: 534 KKGKKEIYLKDEKALSEYLIENGIENFEFQ------GIGTKDLMEFFKIVAHYRSTLNEL 587

Query: 605 YPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                     +  IE   + G+ N +   +I   + +   N LN + E+     +   ++
Sbjct: 588 EKRFQLIEIVRYLIENPDLIGMQNQDLYAKIKEKIQNLNFNILNEMIEEQRIHLYVQTDS 647

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             + +K           ++         +      ++++E     L  +        + P
Sbjct: 648 GLVDIK-----------IDEDLFTHPLFEEAHFVFSKLKE---RDLGFLNG------SDP 687

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             +L+ I    +KG  +QRYKGLGEMN  QLWETT+ P+ R L+RV+I D  +A ++FS 
Sbjct: 688 VEMLEKIEESSKKGADIQRYKGLGEMNPEQLWETTMTPENRRLIRVEIKDIEEASEVFSL 747

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
            MGDEVEPRRE+IQ ++     LD+
Sbjct: 748 FMGDEVEPRREYIQAHAKDVKHLDV 772


>gi|195953991|ref|YP_002122281.1| DNA gyrase, B subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195933603|gb|ACG58303.1| DNA gyrase, B subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 786

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/799 (42%), Positives = 487/799 (60%), Gaps = 17/799 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y  D+I+++ GL+ V+ RPSMYIGD   E GLHH+I+E++DN++DE++ GYA  I V 
Sbjct: 2   QEYGVDAIKVVTGLEHVRLRPSMYIGDIS-ERGLHHLIWEIVDNSVDEAMAGYATHIRVH 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S TV DNGRGIP  +HK+ G  A EV++T L AGGKF++K+Y+ SGGLHGVG SV
Sbjct: 61  IHQDDSITVEDNGRGIPVYIHKDVGKPAVEVVLTVLGAGGKFDKKAYQYSGGLHGVGASV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL + + R+G IY   +  G+    L V G      GT++TF P ++IF     
Sbjct: 121 VNALSEWLIVEVYRDGKIYRQEYERGVPKTELQVIGDTT-KRGTKITFKPDAEIFETTKI 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            +D ++ R+REL++LN +V   +ID R  +        + GI     YL   K+PL    
Sbjct: 180 KFDIVEKRIRELAYLNKNVTFEIIDDRLDKHLVYKF--ERGIIELAEYLAEGKEPLFNDV 237

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I I+  +D   +++A ++   Y E++  F NNI   +GGTH++G RSAL++ ++   +  
Sbjct: 238 IYIESGKDGTLVEIAFKYTKDYKESLESFVNNIKTIEGGTHVTGFRSALSKVVSKLSQNI 297

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             SK+ K    G+D REG  +V+S K+P+P+F  QTK KL + E +++VES   + L+ +
Sbjct: 298 KISKELKEMFTGEDLREGLVAVVSCKVPEPQFEGQTKTKLGNQETKNIVESITVEFLTDY 357

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            E+H    K+IV+K ++A++ R+AA++A+DL RRK  L+  SLPGKLADCSE+DP K E+
Sbjct: 358 FEKHQDILKLIVEKAIEAALAREAAKKAKDLVRRKSFLEDTSLPGKLADCSEKDPSKCEI 417

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEG+SAGGSAKQGR R  QAILPL+GKILNVE+AR DK LS++EI  +I+ALG  IG+
Sbjct: 418 FIVEGESAGGSAKQGRDRRFQAILPLKGKILNVEKARIDKALSNEEIRAIISALGCNIGE 477

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D  D++ LRYHK IIMTDADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY +  G
Sbjct: 478 DV-DLSALRYHKTIIMTDADVDGSHIRTLLLTFFYRFMTKLIENGHVYIAQPPLYKVKIG 536

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K   Y+KD++ LE +L+N  +  ++ +          + L N ++   +    I      
Sbjct: 537 KKETYIKDDKELEKFLLNI-IRTDLSITDAKSNTYRGDVLINMLNTIKEQHNTIAQILNK 595

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667
            +K  I     + + + + D+              +  + KS  S     ++ D     +
Sbjct: 596 RNKDVI-----TYLLSNKIDESYLKDEQKAKKLLEDIQSMKSISSAKLKYDDFDSSYSIV 650

Query: 668 ARGVQEQF-VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-LLDT 725
              + + F +++   + S   K         +E +   +SL        I  P   L   
Sbjct: 651 MYDIYQNFSIIDIDFLTSGTYKK---LFEEHKEFFNYPISLKLGHKVKNIEKPAEDLYQD 707

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           I +  + GI +QRYKGLGEMN  QLWETT+NP+TR LLRV + DA++AD +FS LMG+ V
Sbjct: 708 IINFVKDGIEIQRYKGLGEMNPEQLWETTMNPNTRRLLRVSLEDAAEADRIFSILMGENV 767

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRREFI+  +     LD+
Sbjct: 768 EPRREFIETYAKEVRNLDV 786


>gi|157165358|ref|YP_001465928.1| DNA gyrase subunit B [Campylobacter concisus 13826]
 gi|112801785|gb|EAT99129.1| DNA gyrase, B subunit [Campylobacter concisus 13826]
          Length = 769

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/803 (45%), Positives = 503/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A++I++LKGL+AV+KRP MYIGDT+  SGLHHMIYEV+DN+IDE++ GY D I V
Sbjct: 2   ENNYGAENIKVLKGLEAVRKRPGMYIGDTN-ISGLHHMIYEVVDNSIDEAMAGYCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  +GS  +SDNGRGIP D+H  E ISAA V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  ELTREGSAIISDNGRGIPVDMHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L + IKR+G ++   F  GI  + L V     N TGT+V F P   IF V +
Sbjct: 121 VVNALSKKLVVNIKRDGKLHRQEFAKGIPQSDLEVI-KTTNRTGTQVEFWPDDSIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ + L  R REL++LN  + I+  D+R+   R  +  ++GG+E+FV+ +  +K   +  
Sbjct: 180 FDDEILVKRFRELAYLNPKITINFKDQRNG--RSESFHFEGGLESFVTDM--NKANAVSK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  D++ +D A+ +ND Y EN+L F NNI   DGGTH +G R+ LTR IT+YV+ 
Sbjct: 236 AVSFSGGEDDVMVDFALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYVQA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL SS V+ +V+  V D L+ 
Sbjct: 296 NAAAREKDTKITGEDIREGLIAVVSVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFDVLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EA+ I+ K L A+  R+AA++ARDLTR+K  + + +LPGKLADC  +DP  SE
Sbjct: 356 YFEENPIEARAIMDKALMAARGREAAKKARDLTRKKESMSVGTLPGKLADCQSKDPVISE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+L S EI  +ITALG GIG
Sbjct: 416 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILKSDEIKNMITALGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D FD  KLRYHKIIIMTDADVDG+HI+TLLLTFFFR +  ++ NG +Y+ +PPLY   +
Sbjct: 476 -DEFDAEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLNKVVENGHIYLAQPPLYRYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK   Y+KDE++L ++LI   +             I   DL +F+        ++K+   
Sbjct: 535 GKKEIYLKDEKALNEFLIETGIEGVDI------EGIGSADLIDFLKIVAAYRSVLKELEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE   I      E  + +   L ++  N LN      E   +    +  
Sbjct: 589 RFNVLSAIRYMIENPDIVSKSYNEIFEILRDFLKAEGHNILNHYVSDDEVRIYVQTESG- 647

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
                      E+ V+  +   +   +     S +I+E  L +            +    
Sbjct: 648 ----------LEELVVNENLFTNPLYEEALYISQKIKERGLDLH-----------SDVID 686

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +LD +    +KG  +QRYKGLGEMN  QLWETT+NP+ R LL++ I DA  A D F+  M
Sbjct: 687 VLDEVEKNAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLKIDINDAISASDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR +IQ+++     LDI
Sbjct: 747 GDEVEPRRNYIQDHAKDVKYLDI 769


>gi|94967039|ref|YP_589087.1| DNA gyrase subunit B [Candidatus Koribacter versatilis Ellin345]
 gi|94549089|gb|ABF39013.1| DNA gyrase subunit B [Candidatus Koribacter versatilis Ellin345]
          Length = 879

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/852 (42%), Positives = 518/852 (60%), Gaps = 58/852 (6%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S Y+ DSI++L G++AV+KRP+MYIG T GE GLHH++YEV+DN++DE+L G+AD I V
Sbjct: 31  SSDYNEDSIKVLGGMEAVRKRPAMYIGST-GEMGLHHLVYEVVDNSVDEALAGHADRIDV 89

Query: 67  TLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+++D S TV DNGRGIPT       E I AA+V+MT LHAGGKF+  +YKVSGGLHGVG
Sbjct: 90  TIHIDNSITVIDNGRGIPTGDMDIDGEMIPAAQVVMTVLHAGGKFDSSNYKVSGGLHGVG 149

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALSS L+L I R+G++++  +  G+    L  +G      GT++ F+P + IF+V
Sbjct: 150 VSCVNALSSLLELEIWRDGHVWQQEYSEGVPTTKLKKSGKTTKL-GTKIHFIPDAKIFTV 208

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRS-----PEPREITMFYKGGIEAFVSYLDRH 239
            ++NYDTL +RLREL+FLN  + I+L D+R+      E +     Y GGI  F+ +L+R 
Sbjct: 209 SEYNYDTLANRLRELAFLNKGLLITLTDERTTDPKTGESKHQEFKYTGGIAEFIKHLNRG 268

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L + PI ++  RD +++++A+++ND Y E V  F NNI   DGGTHL G RS+LTR 
Sbjct: 269 KSVLHEKPIYMEAERDGVAMEIALQYNDAYSETVFSFANNINTVDGGTHLQGFRSSLTRT 328

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I    ++    K  K ++ GDD REG  +V+S+K+  P+F  QTK KL +S++  +V++F
Sbjct: 329 INYAGQQLGLFKDVKENLSGDDVREGLVAVISVKLSQPQFEGQTKGKL-NSDIAGIVQAF 387

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ L A+ E++P  A+ I+ K ++AS  R+AAR+ARDLTRRKG LD   LPGKLADCSE
Sbjct: 388 VNERLGAFFEQNPPVARKIINKAIEASRAREAARKARDLTRRKGALDGGGLPGKLADCSE 447

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R P++ E++LVEG+SAGG+AKQGR R  QAILPL+GKILNVE+AR+DKML  +EI  +IT
Sbjct: 448 RQPERCEVYLVEGESAGGTAKQGRDRRFQAILPLKGKILNVEKARYDKMLGHEEIRAMIT 507

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FD  KLRY KII+MTDADVDG+HIRTLLLTFFFR M  LI  G ++I +P
Sbjct: 508 ALGTGIGKDDFDYAKLRYGKIILMTDADVDGSHIRTLLLTFFFRHMQELIKRGNVFIAQP 567

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I +GK  QY+K+E      ++ ++    +  + +    +    L  F+    +   
Sbjct: 568 PLYRIKKGKFEQYIKNEAEFVKVMVKRAADGMVIRYGEGAAKLEGAQLTRFMTSLNEYIG 627

Query: 600 LIKDFYPNHDK----TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
             +              +E+  +S   + E + + + +  + L   +  IA+  +     
Sbjct: 628 FFEKVSKRVRDERVVELMEKLELSKKVDFEGEAKKSPAKVAALEKEIKAIAKDRKLRDIE 687

Query: 656 SI--NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +   +  ++   R       + +L      S   +       +I++       +     K
Sbjct: 688 ARFDDEHNLWFVRFVNDQGAEHLLNWELATSPEYRQMMSKYAQIKDFMEPPFVIETASKK 747

Query: 714 -----------------------------------------IKITGPCSLLDTIFSIGRK 732
                                                    ++ T    L D + S G+K
Sbjct: 748 SSSAAEAAEDLSDAERADLEKAEQKSAKVAVRRTRAGEPEIVEKTNVRELFDYVLSEGKK 807

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
             S+QRYKGLGEM A QLW TT++P+ R+LL VK+ D ++ + +FS LMG++VE RR+FI
Sbjct: 808 EYSVQRYKGLGEMTAEQLWMTTMDPERRTLLEVKLEDMTETETIFSTLMGEDVEARRKFI 867

Query: 793 QENSLPS-ALDI 803
           +EN+L    LDI
Sbjct: 868 EENALDVKNLDI 879


>gi|291288761|ref|YP_003505577.1| DNA gyrase, B subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290885921|gb|ADD69621.1| DNA gyrase, B subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 792

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/798 (43%), Positives = 497/798 (62%), Gaps = 13/798 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SY  DSI++L+GL+AV++RP MYIG   G+ GLHH++YEV+DN+IDE+  G+ D I + 
Sbjct: 6   NSYSDDSIRVLEGLEAVRQRPGMYIGSV-GQRGLHHLVYEVIDNSIDEASAGFCDTIDII 64

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +++DGS TV DNGRGIP  +H + G    EV+MT LHAGGKF+  SY  SGGLHGVG+SV
Sbjct: 65  IHIDGSVTVEDNGRGIPVGIHPKVGRPTVEVVMTTLHAGGKFDSGSYFASGGLHGVGISV 124

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS + ++ +KR+G +Y   +  G        TG      GT+VTF P   IF   +F
Sbjct: 125 VNALSEYAEVTVKRDGGVYYQKYERGTAVTEFKRTGDTS-KRGTKVTFKPDHQIFETLEF 183

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +Y+TL  R REL+FLNS ++I + D+R  +        +GGI ++V YL++ K  ++  P
Sbjct: 184 SYETLTRRFRELAFLNSGLKIKITDERYDKA--DEYHAEGGIVSYVKYLNKAKTVIIPEP 241

Query: 248 IR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           I  ++   D + ++ A+ +ND Y EN+  F NNI  ++GGTH +G ++  T+   ++V K
Sbjct: 242 IYHMEMYEDAVQVEFAIIFNDSYTENLYSFVNNIHTEEGGTHEAGFKAGYTKVFNNFVNK 301

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                KDK ++ GDD REG ++++SI++ +P F  QTK KL S+  ++ VES +   L  
Sbjct: 302 HG-LNKDKVNLTGDDVREGMSAIISIRLNEPVFEGQTKTKLGSAIAKTAVESIMGKFLPD 360

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P   K I++K + A   R+AAR+A++LTRRK VL++++LPGKLADC E+DP KSE
Sbjct: 361 FFEENPAVIKKILEKAMQAFRAREAARKAKELTRRKNVLEVSTLPGKLADCQEKDPAKSE 420

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSAGGSAKQ R R  QAILPL+GKILNVE+ARFDK+LSS EI  LITALGTGIG
Sbjct: 421 LFIVEGDSAGGSAKQCRDRRTQAILPLKGKILNVEKARFDKLLSSNEIRALITALGTGIG 480

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D F+I KLRYHKIIIMTDADVDGAHI TL++TFFFR M  +I  G+LY+  PPLY + +
Sbjct: 481 KDDFNIEKLRYHKIIIMTDADVDGAHISTLIMTFFFRYMTEIIERGYLYMASPPLYKVKK 540

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GKS +Y+++EE++ +YL++Q L          +    K  L N I     + K  K  Y 
Sbjct: 541 GKSERYIQNEETMVNYLLDQGLDGVDIAHV--QPHRYKELLENLIKLNRMVTKFEKKGYS 598

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
                 +           E    ++  LA+     +      +E  ++      +I +  
Sbjct: 599 RKLVKLLASYDDLHFSKLEDKDFVDGLLAAMQKYGILDQYVTNEIEFNEEYGRYNISLA- 657

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
            +  V     +    + +   +  R     ++E       L  +G+          +  +
Sbjct: 658 -SHSVT--VSINTDLLATPEFRELRRLGVYLKEIGDAPYKLNVDGEITNFETLTEFVSFV 714

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
              G+KG+ +QRYKGLGEMN  QLWETT++P +R+L RV+I DA  A++LFS LMGD V 
Sbjct: 715 EQRGKKGLGVQRYKGLGEMNPEQLWETTVDPQSRTLYRVRIEDAEMANELFSLLMGDVVA 774

Query: 787 PRREFIQENSLPS-ALDI 803
           PRREFI+ N+L    LDI
Sbjct: 775 PRREFIENNALNVRNLDI 792


>gi|225851073|ref|YP_002731307.1| DNA gyrase, B subunit [Persephonella marina EX-H1]
 gi|225645970|gb|ACO04156.1| DNA gyrase, B subunit [Persephonella marina EX-H1]
          Length = 805

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/811 (41%), Positives = 503/811 (62%), Gaps = 21/811 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D +    Y A++I +++GLD V+ RP+MYIGD   E GLHH+++E++DNA+DE++ G+A 
Sbjct: 6   DTVTTEEYRAEAIDVVEGLDHVRARPAMYIGDIS-ERGLHHLVWELIDNAVDEAMAGFAK 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I+V ++ DGS TV D+GRGIP D+H + G+ A +++ T L AGGKF++K+Y+ SGGLHG
Sbjct: 65  NISVVIHEDGSVTVEDDGRGIPVDIHPKTGLPAVQMVFTVLGAGGKFSKKAYQYSGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS WL + + R+G +Y   +  G    PL   G   + TGT+VTF+P   IF
Sbjct: 125 VGASVVNALSRWLVVEVYRDGKVYRQEYEFGKPITPLKTVGET-HKTGTKVTFMPDDTIF 183

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F +DT+  R REL+FL   V+  + D+R     +    Y+ GI+ FV  L+  K P
Sbjct: 184 ETVKFKFDTISKRCRELAFLLPGVRFFVSDERVD--IDEEYLYEEGIKDFVRVLNAAKDP 241

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    I ++G +D I +++A ++   Y+E +  F NN+   +GGTH++G R ALTR +  
Sbjct: 242 LFSDVIYVKGEQDRIIVEVAFQYTRSYNEVIESFVNNVKTVEGGTHVAGFRGALTRAMNK 301

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
            +      K+ K  V G+D REG T+V+S+K+P+P+F  QTK KL + EV+ VVE+ V +
Sbjct: 302 TLSGMRLPKELKSGVKGEDLREGLTAVISVKVPEPQFEGQTKSKLGNQEVKRVVENIVGE 361

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  + +++   A  I +K ++A++ R+AA++A++++RRK  L+  SLPGKLADCSE DP
Sbjct: 362 ALLEFFDKNKDIAVKIAEKAIEAAIAREAAKKAKEISRRKSFLEDTSLPGKLADCSETDP 421

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           +  ELF+VEG+SAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS+ EI ++I A+G
Sbjct: 422 EICELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNDEIRSIINAIG 481

Query: 483 TGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           TGIG       + FD++KLRYHKII+M DADVDGAHI TLLLT F+R  P +I NGFLYI
Sbjct: 482 TGIGLSTEEDDEGFDLSKLRYHKIILMADADVDGAHITTLLLTLFYRYFPQIIENGFLYI 541

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + +G+S  YVKD+E L   +    +    +        ++K  +++    A +
Sbjct: 542 AQPPLYKLKKGRSEIYVKDDEELAKIV----IDFASDEITFEGKNLTKIQIKDLAKKAKE 597

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
              L +  Y   DK  I+  +     N   D   +     ++  +L     +    +  +
Sbjct: 598 YSDLKRSIYKRKDKKVIDAVID---LNITEDDLTDEDRVKEIVQKLREKLPEYNVYYERN 654

Query: 657 INNSDILV--KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT-ILSLICNGDK 713
           +   DI +   R  R  Q Q  ++   + S+  +     S+ I++      L++     +
Sbjct: 655 LFEGDIEIFCVREERFKQVQNKIDDDFLTSYAYRRILELSSEIKQIVGELPLTMNYKNKE 714

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           + +T    L D I+  G  G+ +QRYKGLGEMN  QLWETT+NP TR L++V + DA+ A
Sbjct: 715 VTVTDLDQLYDVIWEAGIHGVEIQRYKGLGEMNPEQLWETTMNPKTRRLMQVTLEDAALA 774

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D++FS LMG++VEPR+EFI + +     LD+
Sbjct: 775 DEVFSILMGEKVEPRKEFIMKYAKEVRNLDV 805


>gi|257461146|ref|ZP_05626244.1| DNA gyrase, B subunit [Campylobacter gracilis RM3268]
 gi|257441520|gb|EEV16665.1| DNA gyrase, B subunit [Campylobacter gracilis RM3268]
          Length = 770

 Score =  784 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/799 (44%), Positives = 498/799 (62%), Gaps = 32/799 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ GY D I V
Sbjct: 2   KQNYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGYCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  +GSC VSDNGRGIP D+H  E I AA V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  EITSEGSCIVSDNGRGIPVDIHPTEKIPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   IKR+GNIY   F  GI    L       N TGT + F P  +IF + +
Sbjct: 121 VVNALSKKLVATIKRDGNIYRQEFAKGIPTTELEKI-KTTNRTGTTIEFWPDGEIFEILE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ + L  R REL++LN  + I+  D R+   R+    ++GG+E+FV+ +  +K P +  
Sbjct: 180 FDDEILSKRFRELAYLNPKITINFKDNRTG--RDEHFHFEGGLESFVNDM--NKAPAISK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +    S D++ +D A+ +N+ Y+EN+L F NNI   DGGTH +G R+ LTR IT+YV  
Sbjct: 236 AVSFSDSADDVMVDFALMYNETYNENLLSFVNNIKTPDGGTHEAGFRAGLTRAITNYVAA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +V+S+K+P+P+F  QTK KL SS V+ +V+    + LS 
Sbjct: 296 NAAAREKDTKITGDDVREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQKMAFEVLSK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDPKKS 425
           + EE+P+EA+ I+ K L A+  R+AA++ARDLTR+K  ++     PGKLADC  +D   S
Sbjct: 356 YFEENPIEARAIMNKALLAARGREAAKKARDLTRKKDNINSVGTLPGKLADCQSKDASIS 415

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L S+EI  +ITA G GI
Sbjct: 416 EIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKARLDRILQSEEIKNMITAFGCGI 475

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ F+  KLRYHKIIIMTDADVDG+HI+TLLLTFFFR +  ++ NG++Y+ +PPL+   
Sbjct: 476 GEE-FNEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLRPIVENGYVYLAQPPLFRYK 534

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK   Y+KDE++L ++LI   +             I   DL +++        L+ +  
Sbjct: 535 KGKKEIYLKDEKALSEFLIETGIDMGEF------EGIGNEDLIDYLKIVSNYRSLLNELK 588

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
                  +  A+   + N E+       L   L  RL     +     +  +N+  I + 
Sbjct: 589 KRFS---VLSAIRFLIENDEARSLGYEELFKILKPRLE---SEGFNILNSYVNDEGIRIY 642

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
                  EQ V++ +           +F N I E  + I S I + D         +LD 
Sbjct: 643 VQTPSGLEQLVIDEN-----------LFGNYIFEEAIRIYSKIKDRDVNFGKDFIEILDE 691

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           I    +KG  +QRYKGLGEMN  QLWETT++P+ R LL++ I DA  A D F+  MGDEV
Sbjct: 692 IEKSSKKGAYIQRYKGLGEMNPEQLWETTMSPENRRLLKISIADAQSASDTFNLFMGDEV 751

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR +IQ+++     LDI
Sbjct: 752 EPRRNYIQDHAKDVKHLDI 770


>gi|206889996|ref|YP_002247871.1| DNA gyrase, B subunit [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741934|gb|ACI20991.1| DNA gyrase, B subunit [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 759

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/802 (44%), Positives = 520/802 (64%), Gaps = 60/802 (7%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +  SY A+ I+ILKGL+ V+ RP+MYIG T G  GLHH++YEV+DN++DE+L G+ + I
Sbjct: 15  NKEESYKAEHIKILKGLEGVRTRPAMYIGST-GVEGLHHLVYEVVDNSVDEALAGFCNKI 73

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKE--EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            V L+ DGSC+V DNGRGIPT++H +  E  +A E+++T LHAGGKF  K+YKVSGGLHG
Sbjct: 74  EVRLHTDGSCSVIDNGRGIPTEIHPDDPEKRTALEIVLTELHAGGKFESKAYKVSGGLHG 133

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS WL++ ++R+G +    +  GI    + V G     TGT++ F    +IF
Sbjct: 134 VGLSVVNALSEWLEVEVQRDGKVVRQKYCRGIPVTGVEVIGQTE-KTGTKIKFKADPEIF 192

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            V +F+ + L HR +ELS+LN  ++I LID+R  +        +GGI +FV  L++ KKP
Sbjct: 193 EVTEFSREILAHRFKELSYLNRGLKIILIDER--DGYVEEFIKEGGIVSFVEDLNKGKKP 250

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L   PI I G +D + +++A+++N+GY E +L F NNI  K+GGTHL G +SALTR I S
Sbjct: 251 LHPKPIYITGQKDRVIVEIAIQYNEGYSEEILTFVNNINTKEGGTHLVGFKSALTRTINS 310

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y   +   K+ K S+ G+D REG   V+S+K+P+P+F  QTK KL +SEV+ +VE+ +N+
Sbjct: 311 YAMLNGLLKEGKESLSGEDVREGIVGVISVKIPEPQFEGQTKMKLGNSEVKGIVETILNE 370

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS WLEE+P  AK I++K  DA+  R+AA++A++LTRRKG+L+  +LPGKLADC+E+DP
Sbjct: 371 KLSRWLEENPNYAKRIIEKAKDAARAREAAKKAKELTRRKGILEDTTLPGKLADCTEKDP 430

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSAGGSAKQ R R +QA+LPLRGKILNVE+AR DKML+S+EI TLITA+G
Sbjct: 431 SHAELFIVEGDSAGGSAKQARDRRSQAVLPLRGKILNVEKARIDKMLTSEEIKTLITAIG 490

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG++ F+   +RYHKII+MTDADVDGAHIRTLLLTFF+RQM  LI  G+LYI +PPLY
Sbjct: 491 GGIGKEHFEPENVRYHKIILMTDADVDGAHIRTLLLTFFYRQMLPLIEKGYLYIAQPPLY 550

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I RGK  +Y++ E+   ++L++ ++ E    F +   + +K      + +  +I   ++
Sbjct: 551 RIKRGKWERYIQTEDEFHEFLMDIAVDE--ISFIEESELSTKKSFLKLLFEYGRI---LE 605

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
           +F       F  + ++  +   + +Q +++     L N    I                 
Sbjct: 606 NFERKGFSPFYIENILETLQFQQDNQIVDLRDFETLQNIFEKI----------------- 648

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
              ++ +G++E                                 +    + +K      L
Sbjct: 649 ---KLIQGIRED----------------------------KNYIIRIKTEAVKTKSLWEL 677

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
            + +    +KG+++QRYKGLGEMN  QLWETT++P+ R+LL+V + DA +A+++F+ LMG
Sbjct: 678 YNKVMDAVKKGLTIQRYKGLGEMNPEQLWETTMDPEKRTLLQVTVEDAQRANEIFTILMG 737

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           DEVEPR+EFI  ++L    LDI
Sbjct: 738 DEVEPRKEFIVRHALEVRNLDI 759


>gi|268678647|ref|YP_003303078.1| DNA gyrase subunit beta [Sulfurospirillum deleyianum DSM 6946]
 gi|268616678|gb|ACZ11043.1| DNA gyrase, B subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 770

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/797 (44%), Positives = 491/797 (61%), Gaps = 29/797 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y AD+I++LKGL+AV+KRP MYIGDT+  +GLHH+IYEV+DN+IDE++ GY   I V 
Sbjct: 2   SNYGADNIKVLKGLEAVRKRPGMYIGDTN-INGLHHLIYEVVDNSIDEAMAGYCTNIKVE 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GS  ++DNGRGIP   H+ E +SAA V++T LHAGGKF++ +YKVSGGLHGVGVSV
Sbjct: 61  LTREGSAIITDNGRGIPVGWHEGENMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSS L   IKREGN +   F  GI   PL V     N TGT + F P + IF   +F
Sbjct: 121 VNALSSKLVATIKREGNEHRQEFACGIPVTPLDVV-KTTNRTGTIIEFWPDATIFETTEF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            ++ L  R REL++LN  + I L D+R           +GGI+ FV   D +KK  +   
Sbjct: 180 QFEILATRFRELAYLNPKITIELKDQRDGRTELYHF--EGGIKQFVL--DLNKKEKVAEA 235

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +    S +++ ID+AM +N  Y E +  F NNI   DGGTH SG R+ LTR IT+Y+  +
Sbjct: 236 VHYTASVEDVEIDIAMMYNSTYSEILYSFVNNIKTIDGGTHESGFRAGLTRAITNYISLN 295

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
            G ++    + GDD REG  +++S+K+P+P+F  QTK KL SS V+ +V+  V + L  +
Sbjct: 296 AGVREKDSKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQKLVYEQLVKY 355

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EE+P+EAK I+ K L A+  R+AA+ ARDLTRRK  + I +LPGKLADC  +DP   EL
Sbjct: 356 FEENPIEAKAIMNKALMAARGREAAKNARDLTRRKDAMSIGTLPGKLADCQSKDPSVCEL 415

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           +LVEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L S EI  +ITALG GIG 
Sbjct: 416 YLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMITALGCGIG- 474

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D F+  KLRYHK+IIMTDADVDG+HI+TLLLTF FR +  ++ NG++Y+ +PPLY   +G
Sbjct: 475 DEFNEEKLRYHKLIIMTDADVDGSHIQTLLLTFLFRFLRPIVDNGYVYLAQPPLYRYKKG 534

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K   Y+KD+  +  +LI   +             I  NDL +F         ++K+    
Sbjct: 535 KKEIYLKDDTEMNAFLIESGMDSIDI------EGIGTNDLIDFFKIISAYRGILKELEKR 588

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667
                + + +I      E+   I +S      +  ++I        +  +N   I +   
Sbjct: 589 FSMIEVVRYLI------ENPDLIGLSSQELFGSIQSYIQNLGYNILNHYVNEESIHLFIQ 642

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
            +   E+ +L+ S   +   +  R    +I+E          + D      P  +LD I 
Sbjct: 643 TKDGLEELLLDESFYTNPLYEEARYIFTKIQE---------RDFDVFDGRDPIDVLDEIE 693

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
              +KG  +QRYKGLGEMN  QLWETT+NP+ R LL+VK+ DA  A D F+  MGDEVEP
Sbjct: 694 KSAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLQVKVEDAEIASDTFTLFMGDEVEP 753

Query: 788 RREFIQENSLPSA-LDI 803
           RR++IQ+++     LD+
Sbjct: 754 RRQYIQDHAKDVKHLDV 770


>gi|224437090|ref|ZP_03658071.1| DNA gyrase subunit B [Helicobacter cinaedi CCUG 18818]
 gi|313143561|ref|ZP_07805754.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
 gi|313128592|gb|EFR46209.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
          Length = 772

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/805 (41%), Positives = 491/805 (60%), Gaps = 39/805 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++   Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN++DE++ G+ D I
Sbjct: 1   MEKKEYQASNIKVLKGLEAVRKRPGMYIGDTNSG-GLHHMIYEVVDNSVDEAMAGHCDRI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            +TL M+GS  + DNGRGIP D+H  E + AA +++T LHAGGKF+Q +YKVSGGLHGVG
Sbjct: 60  NITLTMEGSAIIEDNGRGIPVDIHPTENLPAATLVLTTLHAGGKFDQDTYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L + IK+ G+IY   F  GI  + L + G    + GT + F P  ++  V
Sbjct: 120 VSVVNALSKKLIMTIKKNGHIYRQEFAQGIPQSELEIIGETK-EHGTIIEFYPDDEVMEV 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+   L  R +E+++LN ++ I   D+R+ +         GG++ F+   D + KPL+
Sbjct: 179 LEFDSQILTRRFKEMAYLNHNITIYFKDERTGQEESYHF--DGGLKQFIQ--DVNTKPLV 234

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I  +       +++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R I +Y+
Sbjct: 235 SLIISFEALEQETEVEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAIMNYI 294

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E +  +++    V GDD REG  +++S K+ DP+F  QTK KL S+ V+ +V+    + L
Sbjct: 295 EANANAREKDSKVTGDDVREGLVAIISTKVIDPQFEGQTKGKLGSAFVKPIVQKLTYEKL 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + EE+P EA+II++K + A+  R+AA++ARDLT +K    + +LPGKLADC  +DP +
Sbjct: 355 AKFFEENPTEARIIMQKAIMAARGREAAKKARDLTHKKESFSVGTLPGKLADCQSKDPSE 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S EI  +ITA G G
Sbjct: 415 SEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSDEIKNMITAFGCG 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D F+I KLRYHKIIIMTDADVDG+HI+TLL+TFF+R +  L+ NG +YI +PPLY  
Sbjct: 475 IG-DEFNIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLVENGHIYIAQPPLYRY 533

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK+  Y+KDE +L +YL+   +             I   +L   +        ++K+ 
Sbjct: 534 KKGKTEIYLKDERALSEYLVENGIGNFSF------EGIGNKELLEVLKFIAHYRSILKEL 587

Query: 605 YPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
              +      +  +E      +   E  Q I   L +K  N LN I  + + + +     
Sbjct: 588 EKRYPMIDVVRYLVENDSFDNLTLNELSQNIESYLQAKECNILNKITSEEQITLYVQTKV 647

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             + +     G+ +   ++ +        Y++I    ++            G+       
Sbjct: 648 GLVEL-----GINDSLFMD-NFFQEARFIYQKIADRDLDFL---------KGE-----DL 687

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            + L+ I    +K   +QRYKGLGEMN  QLWETT+ P  R+LLRVKI + +  D++F+ 
Sbjct: 688 IAFLEKIEESAKKDAYIQRYKGLGEMNPDQLWETTMTPANRTLLRVKIDNDADTDEIFTL 747

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
            MGDEVEPRR +IQE++     LD+
Sbjct: 748 FMGDEVEPRRAYIQEHAKDVKHLDV 772


>gi|223038508|ref|ZP_03608802.1| DNA gyrase, B subunit [Campylobacter rectus RM3267]
 gi|222880365|gb|EEF15452.1| DNA gyrase, B subunit [Campylobacter rectus RM3267]
          Length = 769

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/803 (44%), Positives = 504/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A++I++LKGL+AV+KRP MYIGDT+  SGLHHMIYEV+DN+IDE++ GY D I +
Sbjct: 2   QQNYGAENIKVLKGLEAVRKRPGMYIGDTN-ISGLHHMIYEVVDNSIDEAMAGYCDTIDI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  +GS  +SDNGRGIP D+H  E ISAA V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  ELTREGSAIISDNGRGIPVDMHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L + IKR+G ++   F  GI  + L +     N TGT+V F P   IF V +
Sbjct: 121 VVNALSKKLVVNIKRDGKLHRQEFSKGIPQSDLEII-KTTNRTGTQVEFWPDDSIFEVME 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ + L  R REL++L+  + I+  D+R+   R  +  Y+GG+E+FV+  D +K   +  
Sbjct: 180 FDDEILTKRFRELAYLSPKITINFKDQRNG--RNESFHYEGGLESFVT--DLNKNEAVSK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  +++ +D A+ +ND Y EN+L F NNI   DGGTH +G R+ LTR IT+Y+  
Sbjct: 236 AVSFSGGEEDVLVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYIAA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL SS V+ +V+  V + LS 
Sbjct: 296 NAAAREKDTKITGEDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFEVLSK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EA+ I++K L A+  R+AA++ARDLTR+K  L I +LPGKLADC  +DP  SE
Sbjct: 356 YFEENPIEARAIMEKALMAARGREAAKKARDLTRKKEGLSIGTLPGKLADCQSKDPTISE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L S EI  +ITALG GIG
Sbjct: 416 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMITALGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D FD  +LRYHKIIIMTDADVDG+HI+TLLLTFFFR +  ++ NG +Y+ +PPLY   +
Sbjct: 476 -DEFDSERLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLHKVVENGHIYLAQPPLYRYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK   Y+KDE +L ++LI   +             I   DL +F+        ++K+   
Sbjct: 535 GKKEIYLKDERALNEFLIETGIEGVEF------EGIGNADLIDFLKIVAAYRSVLKELEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
             +     +  IE   I      E  + +   L ++  N LN    + E   +    +  
Sbjct: 589 RFNVISAIRYMIENPDIISKSYVEIFEILRDYLQAQGHNILNSYVSEEEARIYVQTESG- 647

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
                      E+ ++  +   +   +     S +I+E  + +      GD I +     
Sbjct: 648 ----------LEELLVNENLFTNPLYEEALYISQKIKERGVEL-----KGDVIDV----- 687

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
            L+ I    +KG  +QRYKGLGEMN  QLWETT+NP+ R LL++ I DA  A D F+  M
Sbjct: 688 -LEEIEKNAKKGAYIQRYKGLGEMNPDQLWETTMNPENRRLLKININDAISASDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR +IQE++     LD+
Sbjct: 747 GDEVEPRRNYIQEHAKDVKHLDV 769


>gi|152991737|ref|YP_001357458.1| DNA gyrase subunit B [Sulfurovum sp. NBC37-1]
 gi|151423598|dbj|BAF71101.1| DNA gyrase subunit B [Sulfurovum sp. NBC37-1]
          Length = 773

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/806 (43%), Positives = 493/806 (61%), Gaps = 40/806 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y A +I++LKGL+AV+KRP MYIGDT    GLHH++YEV+DN+IDE++ GY D I
Sbjct: 1   MTMAEYGASNIKVLKGLEAVRKRPGMYIGDTS-TKGLHHLVYEVVDNSIDEAMAGYCDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL   GS  + DNGRGIP   H  E ISAA V++T LHAGGKF++ +YKVSGGLHGVG
Sbjct: 60  KVTLTKAGSAIIEDNGRGIPVTEHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L + ++G I+E SF  GI   PLV TG     TGT++ F P   IF+ 
Sbjct: 120 VSVVNALSKDLHLTVFKDGEIHEQSFQKGIPQEPLVATGPT-RKTGTKIEFWPDDSIFTE 178

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F  + L  R REL +LN S+ I   D+R          ++GGI+ FV  +  + KP 
Sbjct: 179 GVTFQKEILLKRFRELCYLNPSITIEFKDERDGTK--EKFHFEGGIKQFVEDM--NTKPP 234

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           + +    QG  D+I ID+A+ + D   E  L F NNI   DGGTH +G R+ LTR ++SY
Sbjct: 235 LSTAQFFQGKADDIEIDIALMYCDADSEKTLSFVNNIKTPDGGTHEAGFRAGLTRSMSSY 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           + K+  +K+    + GDDC+EG  +++S+++P+P+F  QTK KL SS VR +V+ F ++ 
Sbjct: 295 ISKNASAKEKGTKITGDDCKEGLIAIVSVRVPEPQFEGQTKGKLGSSYVRPLVQKFFSEQ 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            + +LEE+P+EAK I+ +VL A+  RDAA+RA+DL +RK  + I +LPGKLADC  +DPK
Sbjct: 355 FNKYLEENPVEAKAIMAQVLLAARGRDAAKRAKDLVKRKDSMSIGTLPGKLADCQSKDPK 414

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR +K+L S EI  +ITALG 
Sbjct: 415 ISEIYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLEKILKSDEIKNMITALGC 474

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG D F+  KLRYHKIIIMTDADVDG+HI+TLL+TFFFR +  ++  G+LY+ +PPLY 
Sbjct: 475 GIG-DEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFFRFLQPVVEKGYLYLAQPPLYR 533

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
             +GK+  Y+KD+++L D+LI   +S            + +NDL +           +K+
Sbjct: 534 YKKGKNETYLKDDKALNDFLIENGISVIESHT------MGENDLVDLFKLVAYYKMTLKE 587

Query: 604 FYPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
                      +  IE   I G  N E  + +   +     N LN    +    +    N
Sbjct: 588 IEKRFALPEVLRYMIENPDIIGTSNKELAKTLEKYIKKLGYNILNKTITEDRLHYFVQTN 647

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           +             E+ +++     +           +I+E+           D+ K   
Sbjct: 648 DG-----------LEELIVDEILFTNPHYNEAIHIHQKIQEHIT---------DEFKDKD 687

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +L   + +  +KG  +QRYKGLGEMN  QLWETT+ P+ R LL+V+I D+ +A + F+
Sbjct: 688 LLALFAEVEASAKKGAYIQRYKGLGEMNPEQLWETTMTPENRRLLQVRIDDSEEASETFT 747

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
             MGDEVEPRR +I+ ++     LD+
Sbjct: 748 LFMGDEVEPRRNYIESHAKDVKHLDV 773


>gi|255323607|ref|ZP_05364737.1| DNA gyrase, B subunit [Campylobacter showae RM3277]
 gi|255299321|gb|EET78608.1| DNA gyrase, B subunit [Campylobacter showae RM3277]
          Length = 769

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/803 (44%), Positives = 502/803 (62%), Gaps = 41/803 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A++I++LKGL+AV+KRP MYIGDT+  SGLHHMIYEV+DN+IDE++ GY D I +
Sbjct: 2   QQNYGAENIKVLKGLEAVRKRPGMYIGDTN-ISGLHHMIYEVVDNSIDEAMAGYCDTIDI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  +GS  +SDNGRGIP  +H  E ISAA V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  ELTREGSAIISDNGRGIPVGMHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L + IKR+G ++   F  GI  + L V  +  N TGT+V F P   IF V +
Sbjct: 121 VVNALSKKLVVNIKRDGKLHRQEFSKGIPQSDLEVIKNT-NRTGTQVEFWPDDSIFEVTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ + L  R REL++LN  + I+  D+R+   R+ +  Y+GG+E+FV+  D +K   +  
Sbjct: 180 FDDEILTKRFRELAYLNPKITINFKDQRNG--RKESFHYEGGLESFVT--DLNKNEAVSK 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  +++ +D A+ +ND Y EN+L F NNI   DGGTH +G R+ LTR IT+Y+  
Sbjct: 236 AVSFSGGEEDVLVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYIAA 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL SS V+ +V+  V + LS 
Sbjct: 296 NAAAREKDTKITGEDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFEVLSK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EA+ I++K L A+  R+AA++ARDLTR+K  L I +LPGKLADC  +DP  SE
Sbjct: 356 YFEENPIEARAIMEKALMAARGREAAKKARDLTRKKEGLSIGTLPGKLADCQSKDPTISE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L S EI  +ITALG GIG
Sbjct: 416 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMITALGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D FD  +LRYHKIIIMTDADVDG+HI+TLLLTFFFR +  ++ NG +Y+ +PPLY   +
Sbjct: 476 -DEFDAERLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLHKVVENGHIYLAQPPLYRYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK   Y+KDE +L ++LI   +             I   DL +F+        ++K+   
Sbjct: 535 GKKEIYLKDERALNEFLIETGIEGVEF------EGIGNADLIDFLKIVAAYRSVLKELEK 588

Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
                   +  IE   I      E  + +   L ++  N LN    + E   +    +  
Sbjct: 589 RFSMISAVRYMIENPDIVSKSYGEIYEILKNYLEAQGHNILNSYVSEDEARIYVQTESG- 647

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
                      E+ ++  +   +   +     S +I+E       +   GD I +     
Sbjct: 648 ----------LEELLVNENLFTNPLYEEALYISQKIKER-----GIELKGDVIDV----- 687

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
            LD I    +KG  +QRYKGLGEMN  QLWETT+NP+ R LL++ I D   A D F+  M
Sbjct: 688 -LDEIEKNAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLKININDVVSASDTFNLFM 746

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GDEVEPRR +IQE++     LD+
Sbjct: 747 GDEVEPRRNYIQEHAKDVKHLDV 769


>gi|116514952|ref|YP_802581.1| DNA gyrase subunit B [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256806|gb|ABJ90488.1| DNA gyrase subunit B [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 797

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/798 (45%), Positives = 506/798 (63%), Gaps = 9/798 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y + +I+ILKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ + I V ++
Sbjct: 5   YTSSNIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNTINVKIH 64

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D S ++SDNGRGIP D+H E GISAAEVIMT LHAGGKF++ SYKVSGGLHGVG+SVVN
Sbjct: 65  SDNSVSISDNGRGIPIDIHPEAGISAAEVIMTVLHAGGKFDENSYKVSGGLHGVGISVVN 124

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFN 188
           ALS  LKL I R   I    + +G     L+  G      GT++ F P+  IF +  +F 
Sbjct: 125 ALSKKLKLYIYRNSKI-RQIYFHGNPKESLLCIGKTKKQ-GTKIRFWPNEKIFTNQNNFQ 182

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
            + LQ RL+ELSFLNS++ I L D R+          KGGI+ F+ +L+  K P+     
Sbjct: 183 SEILQKRLQELSFLNSNLLIKLTDMRNK--IYFQYLNKGGIKNFIKFLNNSKIPIHNKIF 240

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +  + NI +++AM+WN  + E +LCFTNNIPQ+DGG+HLSG R+ALTR + ++ ++  
Sbjct: 241 IFKKKKKNIEVNIAMQWNSTFQEKILCFTNNIPQQDGGSHLSGFRAALTRTLNNFSDREK 300

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K ++ GDD REG  +++SIKM +P+FSSQTKEKLVSSEV+SVVE+ +N+ L  +L
Sbjct: 301 SNKKNKITITGDDTREGLIALISIKMFNPKFSSQTKEKLVSSEVKSVVETLLNEHLMNFL 360

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P E+K I+ K++ ++  R+AA++AR++TR+KG ++  +L GKL+DC E+DP  SE++
Sbjct: 361 LENPKESKPIITKIIQSARSREAAKKAREITRKKGTIESTNLSGKLSDCQEKDPLFSEIY 420

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGGSAKQGR+R NQAILPL+GKILN+E+AR +K+++S E+ TLIT LG G G++
Sbjct: 421 LVEGDSAGGSAKQGRNRRNQAILPLKGKILNIEKARLEKIINSSELVTLITVLGCGFGKE 480

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            +D+ KLRY+ IIIMTDADVDG HIRTLLLTFFFRQMP +I  G +YI +PPLY I  GK
Sbjct: 481 EYDLKKLRYNYIIIMTDADVDGLHIRTLLLTFFFRQMPEIIKKGHIYIAQPPLYKIKEGK 540

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             +Y+ D   L  Y     + ++  L    K    +      I    KI+KL        
Sbjct: 541 KEKYLTDTNELYKYQYQL-IQKKCYLVYKIKQEKKEETFSKIIFQYNKINKLFLKKKYII 599

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKR 666
                +  +          +    +    L   L    +K   S+    N  N + ++  
Sbjct: 600 PSFIFKIMIYIIPLKNLQKKNKVKNWIKLLIKNLQKKEKKKIYSYQIKKNQKNYEPILNI 659

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
            +      + L+   + +   K    F  +I         +  N  K        ++  +
Sbjct: 660 SSNNNFYSYHLKNEFLLTKKYKKFIKFILKINFLIQHNAYIKLNNKKFIFNNIDKIITLL 719

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
                  +++QRYKGLGEMN  QLW TT+NP TR +L+V + DA  AD LFS LMGD VE
Sbjct: 720 IKETNDFLNIQRYKGLGEMNPEQLWMTTMNPKTRKMLQVTMNDAKSADQLFSILMGDLVE 779

Query: 787 PRREFIQENSLPS-ALDI 803
           PRR FI++N+L +  +DI
Sbjct: 780 PRRNFIKKNALYAKNIDI 797


>gi|51244501|ref|YP_064385.1| DNA gyrase, subunit B [Desulfotalea psychrophila LSv54]
 gi|50875538|emb|CAG35378.1| probable DNA gyrase, subunit B [Desulfotalea psychrophila LSv54]
          Length = 807

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/817 (44%), Positives = 522/817 (63%), Gaps = 24/817 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    +SY A+ I++L GL+AV+KRPSMYIG+T G  GLHH+I+E++DN+IDE+L G+
Sbjct: 1   MTEK---NSYGAEQIKVLDGLEAVRKRPSMYIGNT-GIEGLHHLIWEIVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             +I VT++     TV D+GRGIP D+H  E ISA E++MT LHAGGKF+  SYKVSGGL
Sbjct: 57  CQLIKVTIHEGNKVTVEDDGRGIPVDIHPVEKISALELVMTTLHAGGKFDHSSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALSS  ++ +KR G +Y  ++  G   + L + G     TG+ VTF    +
Sbjct: 117 HGVGISVVNALSSVAQVIVKRNGKMYRQTYAYGDKTSELEIIGDCE-RTGSIVTFQADPE 175

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR---SPEPREITMFYKGGIEAFVSYL 236
           IF+    ++Y+ +++R+REL+FLN  V+I L D+R     +  E      GG+ ++V YL
Sbjct: 176 IFTESTVYDYEVVKNRVRELAFLNMGVKIQLKDERSGAEDKFPEEEFKLPGGVISYVQYL 235

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +R +  ++  PI I G +D + +D+A +  DGY E +  F NNI  ++GG+H++G RSAL
Sbjct: 236 NRKRTTIVAEPICIIGEKDGVEVDIAFQHFDGYAERLFSFVNNINTREGGSHVAGFRSAL 295

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T+ +  Y       K  +  + GDD REG T V+S+++P+P+F  QTK KL ++EV+S+V
Sbjct: 296 TKCMNRYANDDIIPKNLREKMSGDDIREGLTCVISVRVPNPQFEGQTKTKLGNTEVKSIV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES  ++ LS +LE++P  AK I+ KV++A+  R+AA+RARDL+R+KG   +  + GKLA+
Sbjct: 356 ESIASEKLSLFLEQNPQVAKKILFKVVEAARAREAAKRARDLSRKKGSTSLL-MAGKLAE 414

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP K E+F+VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+ARFDK+L S+EI  
Sbjct: 415 CQEKDPAKREIFIVEGDSAGGSAKQGRDRSIQAILPLRGKIMNVEKARFDKILGSEEIKN 474

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI ALG+GIG+D FD+ KLRYHK+IIMTDADVDGAHIRTLLLTFF+RQM  L+  GF+YI
Sbjct: 475 LIAALGSGIGKDDFDVEKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMLPLVQGGFVYI 534

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + RGK  +Y  ++  L  +L  Q+      +    + V+  ++L + ++    
Sbjct: 535 GQPPLYRLGRGKKEKYFLNDGELNHHLFQQASEAMRIMRVSDQVVVEGSELVSLLEKLSM 594

Query: 597 IDKLIKDFYP-NHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEKSW 653
            + ++      N  +  +   + +G+ + +  ++     +L SK++     I       W
Sbjct: 595 YESIVAFMNRINILEDMLFFLLDNGIRSADQFKDKEFVENLISKISEEEFIIGNIRICHW 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN--- 710
                  DI V    RG  +  +  G  I   G   K +      + +L    +I +   
Sbjct: 655 REDCYEVDIAV----RGKVQVMMTLGPEIPLIGEYRKALALFEHVQLFLRGSYIIHHTNK 710

Query: 711 ---GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                +I       ++DTI     KG  +QRYKGLGEMN  QLW+TT+NP+ R L++VKI
Sbjct: 711 SGVEREIAAETWSDMVDTIRDESFKGSHLQRYKGLGEMNPEQLWDTTMNPENRVLVQVKI 770

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            DA QADD+F+ LMGD+VEPRREFIQ ++L    LDI
Sbjct: 771 NDAEQADDMFTTLMGDKVEPRREFIQNHALEVSDLDI 807


>gi|313681133|ref|YP_004058871.1| DNA gyrase subunit b [Sulfuricurvum kujiense DSM 16994]
 gi|313153993|gb|ADR32671.1| DNA gyrase subunit B [Sulfuricurvum kujiense DSM 16994]
          Length = 771

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/798 (43%), Positives = 487/798 (61%), Gaps = 30/798 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y A +I++LKGL+AV+KRP MYIGDT G  GLHH+IYEV+DN+IDE++ G+ D ITVT
Sbjct: 2   ENYGASNIKVLKGLEAVRKRPGMYIGDT-GHRGLHHLIYEVVDNSIDEAMAGHCDTITVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +G+  VSDNGRGIPTD+H  EGISAA V++T LHAGGKF++ +YKVSGGLHGVGVSV
Sbjct: 61  LTKNGTAIVSDNGRGIPTDMHPTEGISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186
           VNALSS LK+ I REG  +E +F  GI   PL          GT + F P   IF+    
Sbjct: 121 VNALSSDLKMTIHREGQSFEQNFKCGIPQEPLA-ITGTTRKRGTTIEFFPDPSIFTETII 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  R REL++LN  + I   D+R+          +GGI  FV+  D +KK ++ S
Sbjct: 180 FDYDYLAKRFRELAYLNPRITIIFKDERNGASNTYHF--EGGISQFVT--DVNKKTVVAS 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P       ++I +D+A+ +ND Y +    F NNI   +GGTH +G R+ LTR I++Y ++
Sbjct: 236 PFAFSEKIEDIEMDIAIMYNDSYDDKTFTFVNNINTPNGGTHEAGFRAGLTRVISNYNKQ 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +K+    + G+D  EG   V+S+++P+P+F  QTK KL ++ VR +V+    + L+ 
Sbjct: 296 NGNAKEKDVPLTGEDVSEGLICVVSVRVPEPQFEGQTKGKLGNTYVRPLVQKVTYEKLTK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+PL+AK IV+K L A+  R+AA++AR+LTRRK  + + +LPGKLADC  +DP  SE
Sbjct: 356 YFEENPLQAKAIVQKALMAARGREAAKKARELTRRKDAMTVGTLPGKLADCQSKDPAISE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+L S+EI  +ITALG GIG
Sbjct: 416 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILKSEEITNMITALGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           ++ F+  KLRYHKIIIMTDADVDG+HI+TLLLTFFFR +P ++ NG+LY+ +PPLY   +
Sbjct: 476 EE-FNEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRYLPKIVENGYLYLAQPPLYRYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK   Y KD+  +  +LI   +        +    +  NDL +F          +     
Sbjct: 535 GKKEIYFKDDRVMNAFLIENGIEALEAENLN----VGVNDLVSFFKMVDHYRSTLDALER 590

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            +        V    +  E+   I++ L         F+  +       S+++ D+ +  
Sbjct: 591 RY------ALVELIRYFIENPDLISLPLTEMYTKVEAFLTAQGNNILSKSVSDEDMHLFV 644

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
             +   E+  +      S           +I++  L +                 LL  I
Sbjct: 645 QTKEGLEELHINDELFASPHFAEANYIFQKIQDWNLPLEG-----------DLLELLTQI 693

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
               +KG  +QRYKGLGEMN  QLWETT+ P+ R LLR+ I DA  A + F+  MGD+VE
Sbjct: 694 TDYAKKGSYIQRYKGLGEMNPEQLWETTMTPENRVLLRITIEDAETAGESFNLFMGDDVE 753

Query: 787 PRREFIQENSLPSA-LDI 803
           PRR +I+ ++     LDI
Sbjct: 754 PRRNYIETHAKDVKHLDI 771


>gi|225874303|ref|YP_002755762.1| DNA gyrase, B subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225791292|gb|ACO31382.1| DNA gyrase, B subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 870

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/862 (40%), Positives = 506/862 (58%), Gaps = 66/862 (7%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S   Q ++Y +D+I++L+GL+AV+ RP+MYIG T GE GLHH++YEV+DN++DE+L GYA
Sbjct: 15  SSQAQKTTYTSDNIKVLEGLEAVRLRPAMYIGST-GEMGLHHLVYEVVDNSVDEALAGYA 73

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHK---EEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
             I VT+++D S TV D+GRGIP D       E + A +V++T+LHAGGKF+  +YKVSG
Sbjct: 74  TRIEVTIHVDNSITVVDDGRGIPVDEKTLDNGEKMPAVQVVLTKLHAGGKFDSSTYKVSG 133

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS    + I R+G+ +E  +  GI  + L   G      GT+V FLP 
Sbjct: 134 GLHGVGVSCVNALSEEFDVEIWRDGHTWEQDYARGIPISKLRQAG-TSKKRGTKVHFLPD 192

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR-----EITMFYKGGIEAFV 233
             IF+V ++NYDTL  RLREL+FLN  ++I L+D+R+ +P+          Y GGI  F+
Sbjct: 193 KSIFTVTEYNYDTLAQRLRELAFLNKGLEIVLVDERTADPKTGQPKRNDFKYAGGIAEFI 252

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            ++++ K+ L   PI ++G RDN+ +++A+++ND Y E V CF NNI   DGGTHLSG +
Sbjct: 253 KHINKGKQILHDKPIVMEGLRDNVDMEIALQYNDSYSETVFCFANNINTADGGTHLSGFK 312

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I S  ++    K  K ++ GDD REG  +V+S+K+P P+F  QTK KL +S++ 
Sbjct: 313 TALTRTINSAGQQLGLFKDVKENLSGDDVREGLVAVISVKLPQPQFEGQTKGKL-NSDIA 371

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V++ VN+ L  +LE++P  AK I+ K ++A+  R+AAR+ARDLTRRKG LD   LPGK
Sbjct: 372 GTVQALVNEKLGMFLEQNPPVAKRIINKAIEAARAREAARKARDLTRRKGALDGGGLPGK 431

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCSER P + EL+LVEG+SAGG+AKQGR R  QAILPL+GKILNVE+AR+DKML  +E
Sbjct: 432 LADCSERQPDRCELYLVEGESAGGTAKQGRDRRFQAILPLKGKILNVEKARYDKMLGHEE 491

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  +ITALG GIG++ FD  KLRY +II+MTDADVDG+HIRTLLLTFFFR M  LI  G 
Sbjct: 492 IRAMITALGCGIGKEDFDPAKLRYGRIILMTDADVDGSHIRTLLLTFFFRHMTELIKRGH 551

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPL+ I +GK  QY+KDE      ++ ++    +  +  +   +    L  F+  
Sbjct: 552 VYIAQPPLFKIKKGKFEQYIKDEREFVRVMVKRASDGMVVRYGATSATLEGAALTKFMGQ 611

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVI----------SGVFNCESDQEINVSLASKLANRLN 643
             +                +               +   + E   +   +   +L   L 
Sbjct: 612 LNEYLGFFDKVNKRLRNDEVTGMFARLFAHEGKEPAKRADFEGPADAAPAKLVELHAELE 671

Query: 644 FIAEKSE------KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
            I    +       ++        +           +  ++ +   S  ++        I
Sbjct: 672 KIQRNYQFKALHQPAFDEEHQTWSLSFVDAQ---GSERRIDWTLASSPETRQMLSKFALI 728

Query: 698 EENYLTILSLI------------------------------CNG-----DKIKITGPCSL 722
            E       +                                 G     + +    P  L
Sbjct: 729 REQLEPPFVVEYASKATAAQTEAEESEAEASDEAEASKPAQKRGARSAAEPVTKQTPQEL 788

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
            D +   G++   +QRYKGLGEM +SQLWETT++P+ R+LL VK+ D ++ + +F+ LMG
Sbjct: 789 FDYVVEQGKRDYQVQRYKGLGEMTSSQLWETTMDPERRTLLSVKLEDIAETETIFTTLMG 848

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           ++VE RR+FI++N+L    LDI
Sbjct: 849 EDVEARRKFIEDNALDVKNLDI 870


>gi|296271548|ref|YP_003654179.1| DNA gyrase subunit B [Arcobacter nitrofigilis DSM 7299]
 gi|296095723|gb|ADG91673.1| DNA gyrase, B subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 772

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/798 (42%), Positives = 489/798 (61%), Gaps = 28/798 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A +I++LKGL+AV+KRP MYIGDT+  +GLHHM+YEV+DN+IDE++ GY   I +
Sbjct: 2   SQEYGASNIKVLKGLEAVRKRPGMYIGDTN-TNGLHHMVYEVVDNSIDEAMAGYCKNIKI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  D    V D+GRGIPT +H+ EGISAA V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  TMTKDHWIRVEDDGRGIPTAIHEGEGISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  +K+ I REG I+   F  GI   PL V G +   TGT + FL    IF V  
Sbjct: 121 VVNALSKEVKMTIYREGKIHYQEFSKGIPKAPLEVIGDSPRKTGTTIEFLADDSIFEVNT 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           +++  L  R RE+++LNS + I+LI++ + +        +GGI+ FV   D +    +  
Sbjct: 181 YDFAVLAKRFREVAYLNSFISITLINEITKKTEVYHF--EGGIKQFVE--DINTATAVSD 236

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +    + D + +D+A+ +ND Y E  L F NNI   DGGTH +G ++ LTR I  Y+ +
Sbjct: 237 AVAFNDNVDGVEVDIAVMYNDTYVEKTLSFVNNIRTIDGGTHEAGFKAGLTRSIVKYLNE 296

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +++S+K+P+P+F  QTK KL SS V+ + +   ++ L  
Sbjct: 297 NAAAREKDTKITGDDVREGLIAIISVKVPEPQFEGQTKGKLGSSYVKPICQRLTSEQLDK 356

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P +AK I+ K L A+  R+AA++ARD+TR+K  + + +LPGKLA+C  +DP   E
Sbjct: 357 YFEENPAQAKAIMDKALMAARGREAAKKARDMTRKKDAMTVGTLPGKLAECQSKDPAIRE 416

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L S EI  +ITALG GIG
Sbjct: 417 LYLVEGDSAGGSAKQGRDRVYQAILPLKGKILNVEKSRLDKILKSDEIRNMITALGCGIG 476

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD  K+RYHKII MTDADVDG+HI+TLLLTFFFR +  +I  G+LYI +PPLY   +
Sbjct: 477 ED-FDEEKIRYHKIIFMTDADVDGSHIQTLLLTFFFRFLRPVIEKGYLYIAQPPLYRYKK 535

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK+  Y+KD+ +L  +LI   L             +  NDL +      +   +++    
Sbjct: 536 GKNETYLKDDNALSAFLIENGLESFEFQ------GLGYNDLVDLFKTVSRYRGMLQQLEK 589

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            +    + + +I      E+   +N+   +       F+  K        + +  I +  
Sbjct: 590 RYSLAEVLKHLI------ENSNLVNLDYQALYEEVKGFLEAKGYNILSKRLTDESIQLFV 643

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
             +   E+ +++     S          N++ E  LT+          +      +LD I
Sbjct: 644 QTKEGLEELLIDDELFASPYFSEATYIYNKLVERDLTVF---------EGRDLVEILDEI 694

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
            ++ +KG  +QRYKGLGEMN  QLWETT+ P+ R LLRV I DA+ A D F+  MGDEVE
Sbjct: 695 ETLAKKGAYIQRYKGLGEMNPEQLWETTMTPEARRLLRVTIDDATVASDTFTLFMGDEVE 754

Query: 787 PRREFIQENSLPSA-LDI 803
           PRR +I+E++     LD+
Sbjct: 755 PRRNYIEEHAKDVEHLDV 772


>gi|157736274|ref|YP_001488957.1| DNA gyrase subunit B [Arcobacter butzleri RM4018]
 gi|315635403|ref|ZP_07890669.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Arcobacter butzleri
           JV22]
 gi|157698128|gb|ABV66288.1| DNA gyrase, subunit B [Arcobacter butzleri RM4018]
 gi|315480161|gb|EFU70828.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Arcobacter butzleri
           JV22]
          Length = 773

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/800 (42%), Positives = 490/800 (61%), Gaps = 28/800 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A +I++LKGL+AV+KRP MYIGDT+  +GLHH++YEV+DN+IDE++ G+   I
Sbjct: 1   MSQQEYGASNIKVLKGLEAVRKRPGMYIGDTN-INGLHHLVYEVVDNSIDEAMAGFCRNI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DG   + D+GRGIPT +H  EGISAA V +T LHAGGKF++ +YKVSGGLHGVG
Sbjct: 60  KVTLTKDGWARIEDDGRGIPTAIHPTEGISAATVALTVLHAGGKFDKDTYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LK+ + REG I+   F  GI    L + G +   TGT + FL    IF V
Sbjct: 120 VSVVNALSKHLKMTVYREGKIHYQEFKEGIPQGTLEIIGDSPRKTGTTIEFLVDDSIFEV 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + ++ L+ R +E+++LN  + I+L D+ +          +GGI+ FV+ +  +K+  +
Sbjct: 180 TKYEFNILKKRFKEVAYLNPIISITLEDEAAKLKEVYHF--EGGIKQFVADM--NKETAL 235

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I      + + +D+AM +ND Y E  L F NNI   DGGTH +G ++ LTR I+ Y+
Sbjct: 236 CEVISFSDRVEGVEVDIAMMYNDTYIEKTLSFVNNIRTIDGGTHEAGFKAGLTRSISKYL 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            ++  +++    + GDD REG  +V+S+K+P+P+F  QTK KL SS VR + +    D L
Sbjct: 296 SENAAAREKDTKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIAQKLTGDNL 355

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + EE+P  AK I++K L A+  R+AA++AR+LTR+K  + + +LPGKLA+C  +DP  
Sbjct: 356 DKYFEENPTHAKAIMEKALMAARGREAAKKARELTRKKDAMTVGTLPGKLAECQSKDPAI 415

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            EL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L S EI  +ITALG G
Sbjct: 416 RELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIRNMITALGCG 475

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D FD  K+RYHKIIIMTDADVDG+HI+TLLLTFFFR +  +I  G+LYI +PPLY  
Sbjct: 476 IGED-FDEEKIRYHKIIIMTDADVDGSHIQTLLLTFFFRFLRPVIEKGYLYIAQPPLYRY 534

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK+  Y+KD  +L  +LI   L             +  NDL +      K   +++  
Sbjct: 535 KKGKNEIYLKDNNALSAFLIENGLESFEF------EGLGYNDLLDLFKIVSKYRAMLEQL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
              +    + + +I      E+   +N+       N  +F+ +K       ++ +  I +
Sbjct: 589 GKRYSLLEVLKHLI------ENSDLVNLEFKDLYENIKDFLDKKGYNILSKTVLDDRIQL 642

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
                   E+ +++     S          ++++E  L++          +      +L+
Sbjct: 643 FVQTNEGLEELIIDEELFASPYFSEATYIYSKLKERDLSVF---------EGRDLIEILE 693

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            I ++ +KG  +QRYKGLGEMN  QLWETT+ PD R LLRVKI DA  A D F+  MGDE
Sbjct: 694 EIETLAKKGAYIQRYKGLGEMNPEQLWETTMIPDNRRLLRVKIEDAEVASDTFTLFMGDE 753

Query: 785 VEPRREFIQENSLPSA-LDI 803
           VEPRR +I+E++     LD+
Sbjct: 754 VEPRRNYIEEHAKDVEHLDV 773


>gi|189218174|ref|YP_001938816.1| DNA gyrase subunit B [Methylacidiphilum infernorum V4]
 gi|189185032|gb|ACD82217.1| DNA gyrase subunit B [Methylacidiphilum infernorum V4]
          Length = 841

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/831 (43%), Positives = 502/831 (60%), Gaps = 41/831 (4%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA  I+ L+GL+AV+KRP MYIG TD E GLHH I+EVLDN+IDE L GY   I +T+
Sbjct: 16  SYDASRIEKLEGLEAVRKRPGMYIGPTD-ERGLHHCIFEVLDNSIDEHLAGYCSRIELTI 74

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           ++DGS ++ DNGRGIP D H +  I A E+++T LHAGGKF+Q  YK SGGLHGVG   V
Sbjct: 75  HVDGSVSILDNGRGIPVDPHPKFKIPAVELVLTNLHAGGKFSQGVYKYSGGLHGVGAKCV 134

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DF 187
           NALS W K+ + R+G +Y M F  G    PL V G     TGT +TF P  +IF+   +F
Sbjct: 135 NALSEWFKVEVFRDGKVYRMEFRRGKTSKPLEVVGKT-LKTGTLITFKPDPEIFTQTLEF 193

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKR---SPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + +  RLREL+FLN  ++I L+D+R     +P  +  F+K GI  FVS   +  KPL 
Sbjct: 194 KTEIIAKRLRELAFLNPGLEILLLDERQLDGSKPSSLRFFFKEGIAEFVSQFTQDLKPLC 253

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             PI IQ  +D++ +D  +++ +GY E + C+TN IP  DGG+HLSGLR+ALTR I  Y 
Sbjct: 254 PRPIVIQKQKDDLIVDCVLQYTEGYTEQIFCYTNGIPNPDGGSHLSGLRTALTRSINQYG 313

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           + +   K+    + G+D REG   +LS+K P P F SQTK KLVS EV  VV S V +GL
Sbjct: 314 KANNLFKEKDPPLSGEDVREGLVCILSLKHPSPSFESQTKVKLVSPEVEGVVSSLVYEGL 373

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +LE +P  AK IV+K L A+  R+AA++AR+   RK  L    LPGKLADCS R+P++
Sbjct: 374 MNYLELNPQVAKRIVEKALTAARAREAAKKAREAV-RKTALSGGGLPGKLADCSVRNPQE 432

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELF+VEGDSAGGSAKQGR+R+ QAILP+RGK++NVE+AR DK+L+++EI T+ITA+GTG
Sbjct: 433 AELFIVEGDSAGGSAKQGRNRQFQAILPIRGKLINVEKARLDKVLNNEEIQTIITAVGTG 492

Query: 485 I----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           I    G+ SF + +LRYHKII+MTDADVDG+HIRTLLLTFF+RQMP LI+ G +YI +PP
Sbjct: 493 IGDGDGEGSFLLERLRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELINKGHVYIAQPP 552

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I + K   YV+++E L   L+ Q +        +++ V    +L   +    K+ + 
Sbjct: 553 LYLIGKKKEEYYVQNDEELNKILLEQGVKNVELFRANAEKVFRGRELFGILSKLEKLSQF 612

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
            K    +     +   + +         E  V +      RL F  ++ +       N  
Sbjct: 613 CKYLELHGIDFDL--LLANKDPQTGKLPEHIVRVWENNQERLYFFFDERQLGHFAEENPD 670

Query: 661 DILVKRIARGV------------QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL- 707
            +L +   R              +       S +  F S         + +    I    
Sbjct: 671 LLLFETPGRESLPPTGGELQADEERPRARRASYLELFESPMVMKILEELLQLGFEISRYK 730

Query: 708 ----------ICNGDK----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
                     +  G+K    + I     +L+ +   G++G+ ++R+KGLGEMN  QL+ET
Sbjct: 731 SKDVPLYKMIVKKGEKGEKQLDIFSIGQILEVVKENGKEGVEIKRFKGLGEMNPKQLYET 790

Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           T++P  R LL+V+I DA +A+ +F  LMG+EVEPR+ FI+EN+L    LD+
Sbjct: 791 TMDPQKRKLLKVEIADAIEAERVFVTLMGEEVEPRKRFIEENALHVRNLDV 841


>gi|32266626|ref|NP_860658.1| DNA gyrase subunit B [Helicobacter hepaticus ATCC 51449]
 gi|32262677|gb|AAP77724.1| DNA gyrase (topoisomerase II) [Helicobacter hepaticus ATCC 51449]
          Length = 772

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/805 (43%), Positives = 494/805 (61%), Gaps = 39/805 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++   Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ GY D I
Sbjct: 1   MEKKEYQASNIKVLKGLEAVRKRPGMYIGDTNSG-GLHHMIYEVVDNSIDEAMAGYCDKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            +TL M+GS  + DNGRGIP D+H  E + AA +++T LHAGGKF+Q +YKVSGGLHGVG
Sbjct: 60  NITLTMEGSAIIEDNGRGIPVDIHPTENLPAATLVLTTLHAGGKFDQDTYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L + IK+ G+IY   F  GI  + L V G+     GT + F P  ++  V
Sbjct: 120 VSVVNALSKRLIMTIKKNGHIYRQEFAKGIPQSDLEVIGNTK-KHGTTIEFFPDGEVMEV 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+ D L  R +E+++LN ++ I   D+R+          +GG++ F+   D +KKPL+
Sbjct: 179 LEFDKDILVRRFKEMAYLNHNITIQFKDERTQFEEIYHF--EGGLKQFIQ--DVNKKPLI 234

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            S I  + +     I++A+ +N+GY E +L F NNI   DGGTH +G R+ L+R I +Y+
Sbjct: 235 SSIISFEATEQESEIEIALAYNEGYDEKLLSFVNNIRTPDGGTHEAGFRAGLSRAIMNYI 294

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E +  +++    V G+D REG  +++S K+ DP+F  QTK KL SS V+ +V+    + L
Sbjct: 295 EANANAREKDAKVSGEDVREGLVAIISTKIIDPQFEGQTKGKLGSSFVKPIVQKLTYEKL 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S + EE+P EAK I++K + A+  R+AA++ARDLTR+K    + +LPGKLADC  +DP  
Sbjct: 355 SKFFEENPNEAKAIMQKAIMAARGREAAKKARDLTRKKESFSVGTLPGKLADCQSKDPSV 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S EI  +ITA G G
Sbjct: 415 SEIYLVEGDSAGGSAKQGRDRTFQAILPLRGKILNVEKSRLDKILKSDEIKNMITAFGCG 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ F+I KLRYHKIIIMTDADVDG+HI+TLL+TFF+R +  L+ NG +YI +PPLY  
Sbjct: 475 IGEE-FNIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLVENGHIYIAQPPLYRY 533

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK   Y+KDE +L +YLI   +             +   +L   +        ++K+ 
Sbjct: 534 KKGKKEIYLKDERALSEYLIENGIENFKF------EGVGNRELLEILKFISHYRSILKEL 587

Query: 605 YPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
              +      +  +E      +      Q I   L SK  N LN    + + +       
Sbjct: 588 EKRYPMIEVVRYLVENEQFDTLELKALSQNIESYLISKECNILNKTTAQEQIT------- 640

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
              L  +   G+ E  + +   + +F  + + I+    ++     L  + + D I     
Sbjct: 641 ---LYVQTKVGLVELSINDTLFMDNFFQEARFIY----KKIADRDLGFLNDEDMIV---- 689

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
              L+ I    +K   +QRYKGLGEMN  QLWETT+ P  R+LLRVKI +    D++F+ 
Sbjct: 690 --FLERIEESAKKDAYIQRYKGLGEMNPDQLWETTMIPQNRTLLRVKIDNDINTDEIFTL 747

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
            MGDEVEPRR +IQE++     LD+
Sbjct: 748 FMGDEVEPRRAYIQEHAKDVKHLDV 772


>gi|154173892|ref|YP_001407307.1| DNA gyrase subunit B [Campylobacter curvus 525.92]
 gi|112803527|gb|EAU00871.1| DNA gyrase, B subunit [Campylobacter curvus 525.92]
          Length = 770

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/805 (44%), Positives = 494/805 (61%), Gaps = 41/805 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++   YDA +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ GY D I
Sbjct: 1   MEEKHYDAGNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGYCDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +  +GSC V+DNGRGIP D+H  E + AA V++T LHAGGKF++ +YKVSGGLHGVG
Sbjct: 60  DIEITNEGSCIVTDNGRGIPVDMHPTEHLPAATVVLTVLHAGGKFDKDTYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L IKR+GN+Y   F  GI    L       N TGT+V F     IF V
Sbjct: 120 VSVVNALSKKLILTIKRDGNVYRQEFQKGIPVTALETI-KTTNRTGTQVEFFVDDSIFEV 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+ + L  R REL++LN  + I+  D+R           +GG+E+FV+ +  +K   +
Sbjct: 179 TEFDREILAKRFRELAYLNPKITINFKDQRDGFNESYHF--EGGLESFVTDM--NKAQAV 234

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              +   G  +++ +D A+ +ND Y EN+L F NNI   DGGTH +G R+ LTR IT+Y+
Sbjct: 235 SKAVSFSGGEEDVMVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYI 294

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
             +   ++    + GDD REG  +V+S+K+P+P+F  QTK KL SS V+ +V+  V D L
Sbjct: 295 AANAAVREKDTKITGDDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFDVL 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S + EE+P+EA+ I+ K L A+  R+AA++ARDLTR+K  L + +LPGKLADC  +D   
Sbjct: 355 SKYFEENPIEARAIMNKALMAARGREAAKKARDLTRKKEGLSVGTLPGKLADCQSKDATI 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L S EI  +ITALG G
Sbjct: 415 SELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMITALGCG 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D FD  KLRYHKIIIMTDADVDG+HI+TLLLTFFFR +  ++ NG++Y+ +PPLY  
Sbjct: 475 IG-DEFDAEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLHQVVDNGYIYLAQPPLYRY 533

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK   Y+KDE++L ++LI   +             I   DL +F+        ++K+ 
Sbjct: 534 KKGKKEIYLKDEKALNEFLIETGIEGVEF------EGIGNADLIDFLKIVAAYRSVLKEL 587

Query: 605 YPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
               +     +  IE   I      E  + +   L  +  N LN             +N+
Sbjct: 588 EKRFNVLSAIRYMIENPDIVSKSYPEIFEILKAYLKGQGHNILNSY-----------VND 636

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            +I +        E+F++      +   +     + +I+E  +                 
Sbjct: 637 DEIRIYVQTESGLEEFIVNEGLFTNPLYEEAVYINQKIKEREINFK-----------KDV 685

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             +LD I    +KG  +QRYKGLGEMN  QLWETT+NP+ R LL++ I DA  A D F+ 
Sbjct: 686 IEILDEIEKNAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLKINIEDAISASDTFNL 745

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
            MGDEVEPRR +IQ+++     LDI
Sbjct: 746 FMGDEVEPRRNYIQDHAKDVKHLDI 770


>gi|254442695|ref|ZP_05056171.1| DNA gyrase, B subunit [Verrucomicrobiae bacterium DG1235]
 gi|198257003|gb|EDY81311.1| DNA gyrase, B subunit [Verrucomicrobiae bacterium DG1235]
          Length = 839

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/832 (39%), Positives = 487/832 (58%), Gaps = 44/832 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S Y+A +IQ L+GL+ V+KRP MYIGDT+ E GLHH ++EV+DN+IDE+L  Y   I V
Sbjct: 17  DSDYNASNIQKLEGLEGVRKRPDMYIGDTN-ERGLHHCVFEVVDNSIDEALASYCKNIKV 75

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++++DGSC++ D+GRGIP D+H +  I A E+++T LHAGGKF + +Y+VSGGLHGVG  
Sbjct: 76  SIHLDGSCSIEDDGRGIPVDIHPKYNIPALELVLTNLHAGGKFGKGAYQVSGGLHGVGAK 135

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185
            VNA+S W +  ++R+G I++M F  G+    L + G     TGT+++F P  +IF    
Sbjct: 136 CVNAVSEWFEAEVRRDGKIHQMQFSKGLTTKSLTIIGDT-QKTGTKISFKPDPEIFQTTL 194

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y+ L  RLREL+FLN  + ISLID+RS +    +  +  GI  ++ +L+R K  L +
Sbjct: 195 TFQYEILGKRLRELAFLNPGISISLIDERSNKE--ESFLFVDGIAEYIRFLNRSKNVLHE 252

Query: 246 SPIRIQG------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            PI              I +D+++++ND Y++ +  + N+I   +GGTHL+G R+ALTR 
Sbjct: 253 DPISFSDSVKTNEDAPPIGVDVSLQYNDSYNDQIFAYANSIFNIEGGTHLTGFRTALTRV 312

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  +   +   K    ++ GDD REG  +V+S+K+P+PRF  QTK KL + EV  +V+  
Sbjct: 313 VNQFARANNLLKDKDPAITGDDAREGLVAVVSVKVPEPRFEGQTKTKLSNGEVDGIVQKI 372

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L    E  P  AK ++      +     A R    T RK  L    LPGKLADCS 
Sbjct: 373 VGERLKYHFETDPKLAKRLID-KCLNAARAREAARKARETVRKSALSGGGLPGKLADCSS 431

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R P++SE+++VEGDSAGGSAKQGR R  QAILPLRGK++N E+AR DK+LS+ EI T+IT
Sbjct: 432 RKPEESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKLINSEKARIDKVLSNNEIRTMIT 491

Query: 480 ALGTGIGQDS----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           A+GTGIG       F+I K RYHKIIIMTDADVDG+HI TLLLTF +R M  LI  G++Y
Sbjct: 492 AIGTGIGDSEDGGGFNIEKARYHKIIIMTDADVDGSHISTLLLTFLYRHMKGLIERGYVY 551

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           + +PPLY I R +  QY+ ++E L   L+     E +    D         L   ++   
Sbjct: 552 MAQPPLYKIKRKRREQYIDNDEQLNRILLELGGDESVLTRVDDGHKFEGEKLDKIVEVFA 611

Query: 596 KIDKLIKDFYPNHDK--TFIEQ------AVISGVFNCESDQEINVSLASKLANRLNFIAE 647
           +++++      +      ++EQ      ++   +               + ++R  F+  
Sbjct: 612 QLERIGGSVTRHGGSLAEYLEQYSKENHSLPRYLARVREGNNETYHFLREESDRAAFVQN 671

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
           +   +   +  N+   +   A G+ ++  +       F S       + IE   L +   
Sbjct: 672 QGMGAEGLNEENATATIFDEAAGISKRISI----FEIFESNEMSKLLHEIENIGLNLSQF 727

Query: 708 ICNGD---------------KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWE 752
           + + +                I+I    S+LD I   GRKG+S+QRYKGLGEMN  QL+E
Sbjct: 728 VTSEEPVYTFTENLGSKSENTIEIFSNMSILDEIRKSGRKGLSIQRYKGLGEMNPKQLYE 787

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           TT++   R LL+V I DA++AD+LF+ LMG+EV PRR FI++N+L  + LD+
Sbjct: 788 TTMDVSKRRLLKVNINDAAKADELFTILMGEEVAPRRLFIEDNALNVSYLDV 839


>gi|154148768|ref|YP_001405626.1| DNA gyrase subunit B [Campylobacter hominis ATCC BAA-381]
 gi|153804777|gb|ABS51784.1| DNA gyrase, B subunit [Campylobacter hominis ATCC BAA-381]
          Length = 768

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/796 (42%), Positives = 501/796 (62%), Gaps = 30/796 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A +I++LKGL+AV+KRP MYIGDT+   GLHHMIYEV+DN+IDE++ GY D + + L
Sbjct: 2   EYGAGNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVIDNSIDEAMAGYCDTVNIRL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             +GS  ++DNGRGIPTD+H  E I AA V++T LHAGGKF++ +YKVSGGLHGVGVSVV
Sbjct: 61  TKEGSAVITDNGRGIPTDIHPTEKIPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L   IKR G IY   F  GI  N L + G    +TGT++ F P S+IF + +F+
Sbjct: 121 NALSVRLIATIKRNGKIYRQEFSKGIPVNNLEIIGDTE-ETGTQIEFWPDSEIFEILEFD 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
            + L  R +EL++LN  + I+  D+R+   R+    ++GG+E+FV+ L+ +++ ++   +
Sbjct: 180 DEILSKRFKELAYLNPKITINFKDERTG--RDECFHFEGGLESFVTDLNHNRQ-IVSKSV 236

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               + D++++D A+ +N+ Y EN+L F NNI   +GGTH +G R+ LTR IT+Y+  + 
Sbjct: 237 SFSDTIDDVAVDFALLYNETYSENLLSFVNNIHTPEGGTHEAGFRAGLTRAITTYINANA 296

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K+    + GDD REG  +++S+K+P+P+F  QTK KL SS V+ +V+    D LS + 
Sbjct: 297 SAKEKDTKITGDDVREGLIAIISVKVPEPQFEGQTKGKLGSSYVKPIVQKMTFDVLSKYF 356

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P+EAK ++ K L A+  R+AA++ARDLTR+K    + +LPGKLADC  +D   SE++
Sbjct: 357 EENPIEAKAVMNKALLAARGREAAKKARDLTRKKESFGVGTLPGKLADCQSKDASISEIY 416

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A  +K+L S+EI  +ITA G G+G +
Sbjct: 417 LVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKAYLEKILRSEEIKNMITAFGCGVGSE 476

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FD  KLRYHKIIIMTDADVDG+HI+TLLLTFFFR +  ++  G++Y+ +PPL+   +GK
Sbjct: 477 -FDEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLKPIVEKGYVYLAQPPLFRYKKGK 535

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
              Y+KDE++L ++LI   +             I +NDL +F+        ++ +     
Sbjct: 536 KEIYLKDEKALSEFLIQTGIEVGEF------EGIGENDLIDFLKIVSSYRSILNELKKRF 589

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIA 668
                   + +  +  E+++  ++S           I + +    +  +N + IL+    
Sbjct: 590 ------SLISAVRYLVENEEARSMSYNELFEVLKTKIEDLNFNILNSRVNENGILIYVQT 643

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
               E+  ++ S   +   +       +I++  L                   +LD I  
Sbjct: 644 PNGLERLKIDDSLFTNNLFEEAVYLYGKIKDRNLDFK-----------KDFIEILDDIEK 692

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788
             +KG  +QRYKGLGEMN  QLWETT+NP+ R L+++ I+DA  A D F+  MGDEVEPR
Sbjct: 693 NAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLVKISISDAESASDTFNLFMGDEVEPR 752

Query: 789 REFIQENSLPSA-LDI 803
           R++IQ ++     LDI
Sbjct: 753 RDYIQTHAKDVKHLDI 768


>gi|320108482|ref|YP_004184072.1| DNA gyrase subunit B [Terriglobus saanensis SP1PR4]
 gi|319927003|gb|ADV84078.1| DNA gyrase, B subunit [Terriglobus saanensis SP1PR4]
          Length = 877

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/862 (41%), Positives = 506/862 (58%), Gaps = 67/862 (7%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            ++Q ++Y +D+I+IL+GL+AV+ RP+MYIG T GE GLHH++YEV+DN++DE+L G+A 
Sbjct: 22  QSVQTTTYTSDNIKILEGLEAVRLRPAMYIGST-GEQGLHHLVYEVVDNSVDEALAGHAT 80

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLH---KEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
            I VT+++D S TV D+GRGIP D+        ++A EV++T+LHAGGKF+  SYKVSGG
Sbjct: 81  RIDVTIHVDNSVTVVDDGRGIPVDMKTLPDGSKMAAVEVVLTKLHAGGKFDASSYKVSGG 140

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS    + I R+G+ Y+ ++  G     +   G +    GT+V FLP  
Sbjct: 141 LHGVGVSCVNALSEEFDVEIWRDGHTYQQNYSKGDPLEAVREVGVSK-KRGTKVHFLPDR 199

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
            IF+V ++NYDTL +RLR+L+FLN  ++I+L D+RS     E +     Y GGI  F+ +
Sbjct: 200 SIFTVHEYNYDTLANRLRQLAFLNKGIEITLTDERSIDAKGEAKHNDFKYNGGIAEFIKH 259

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L++ K  L + PI ++  R  + +++A+++ND Y E V  F NNI   DGGTHLSG R++
Sbjct: 260 LNKGKAVLHEKPIYMEAERGQLVMEIALQYNDAYSETVFSFANNINTVDGGTHLSGFRTS 319

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I +  +     K  K S+ GDD REG  +V+S+K+P P+F  QTK KL +S++   
Sbjct: 320 LTRTINAAGQSMGLFKDLKESLSGDDVREGLVAVVSVKLPQPQFEGQTKGKL-NSDISGQ 378

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+SFVN+ L  + E++P  AK I+ K +DA+  R+AAR+ARDLTRRKG LD   LPGKLA
Sbjct: 379 VQSFVNERLGVFFEQNPQVAKKIINKAIDAARAREAARKARDLTRRKGALDGGGLPGKLA 438

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSER P + EL+LVEG+SAGG+AKQGR R  QAILPL+GKILNVE+AR+DKML  +EI 
Sbjct: 439 DCSERQPDRCELYLVEGESAGGTAKQGRDRRFQAILPLKGKILNVEKARYDKMLGHEEIR 498

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            +ITALGTGIG+D FD+ KLRY K+I+MTDADVDG+HIRTLLLTFFFR M  LI  G +Y
Sbjct: 499 AMITALGTGIGKDDFDLAKLRYGKLILMTDADVDGSHIRTLLLTFFFRHMGELIKRGHVY 558

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPL+ I +GK  +Y+KDE      ++ ++    I  + +S   +   +L  F+    
Sbjct: 559 IAQPPLFKIKKGKREEYIKDEREFVKVMVKRASDGMIVRYGESAATLEGAELTKFMGHLN 618

Query: 596 KIDKLIKDFYPNHDKT-----FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK-- 648
           +                    F E     G               +++  +L  +A    
Sbjct: 619 EYLGFYDKADKRFRNDAVTTMFAEIFANEGKEPARRADFETPDKLNQMQAKLKAMAHDAK 678

Query: 649 ----SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
                E           +     ++G   Q  ++ +   +   +       +I E     
Sbjct: 679 FKAVGEPVLDEEHQTWSLSYSD-SQGAPRQ--IDFTMASAPEMRQMLGKYAQIREQLQPP 735

Query: 705 LSL------------------------------------------ICNGDKIKITGPCSL 722
             +                                            + D ++      L
Sbjct: 736 FYVSYADKTAKQDADDAEEAAETEVAADATAPGTVAEVKGKQRNNRASQDPVQRNSAREL 795

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
            D +   G+K   +QRYKGLGEM A QLWETT++P  R+L+ VK+ D +  +++F+ LMG
Sbjct: 796 FDYVIEQGKKEYQVQRYKGLGEMTAEQLWETTMDPARRTLVIVKLEDIAATEEIFTTLMG 855

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           ++VE RR+FI+EN+L    LDI
Sbjct: 856 EDVEARRKFIEENALDVKNLDI 877


>gi|294054231|ref|YP_003547889.1| DNA gyrase, B subunit [Coraliomargarita akajimensis DSM 45221]
 gi|293613564|gb|ADE53719.1| DNA gyrase, B subunit [Coraliomargarita akajimensis DSM 45221]
          Length = 846

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/836 (39%), Positives = 480/836 (57%), Gaps = 41/836 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N Q   YD+  IQ L+GL+ V+KRP MYIGDT+ E GLHH ++E++DN+IDE+L G+  
Sbjct: 17  KNAQPDVYDSSKIQKLEGLEGVRKRPDMYIGDTN-ERGLHHCVFEIVDNSIDEALAGHCS 75

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            ITV+++ DGSC++ D+GRGIP D+H +  I A E++MT LHAGGKF + +Y+VSGGLHG
Sbjct: 76  QITVSIHNDGSCSIEDDGRGIPVDIHPKYQIPALELVMTNLHAGGKFGKGAYQVSGGLHG 135

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG   VNA+S W ++ ++R+G +++M F  G+    + + G     TGT + F P   IF
Sbjct: 136 VGAKCVNAVSEWFEVEVRRDGKVHKMEFSRGLTTQKMKIIGETK-RTGTRIAFSPDPQIF 194

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                F Y+ L  RLREL+FLN  ++I   D+R  +       +K GI  +VS+L+ +K 
Sbjct: 195 EATREFKYELLGKRLRELAFLNPGIKIIFTDERVSKT--EEFIFKDGIAEYVSFLNENKN 252

Query: 242 PLMQSPIRIQGS--------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +   PI   G           NI +D+A ++NDGY + +  + N+I   +GGTHLSG R
Sbjct: 253 IIHPDPISFHGEAPTPNPDLDANIVVDIAFQYNDGYSDQIYSYANSIHNIEGGTHLSGFR 312

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I +Y +++   K    ++ GDD REG T+V+S+K+P+PRF  QTK KL + EV 
Sbjct: 313 TALTRVINAYAKQNGLLKDKDPNLSGDDAREGLTAVISVKVPEPRFEGQTKTKLSNGEVD 372

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V+    + L  + E +P  AK ++      +     A R    T RKG L    LPGK
Sbjct: 373 GIVQKITGEELKFYFETNPQVAKKLID-KCLNAARAREAARKARETVRKGALSTGGLPGK 431

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILP+RGK+LNVE+AR DK+L + E
Sbjct: 432 LADCSSKDPSVSELYIVEGDSAGGSAKQGRDRATQAILPIRGKLLNVEKARLDKVLGNNE 491

Query: 474 IGTLITALGTGIGQDS----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I +LITA+GTGIG       FD++K RYHKII+MTDADVDGAHI TLLLTF FRQM  LI
Sbjct: 492 IRSLITAVGTGIGDHEGDGAFDVSKARYHKIILMTDADVDGAHIMTLLLTFLFRQMKGLI 551

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI +PPLY I R +  QYV ++  L   L+     +   +    +  +S   +  
Sbjct: 552 EAGYVYIAQPPLYKIKRKRREQYVDNDPQLNRILLELGSEDVNLVRLRDQKDLSGEKIDE 611

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
            ++   +++ +I      +   F            E  + I                + +
Sbjct: 612 LVESLSRLE-MIGRGVTRYGCDFATYLDQHTDGTYELPRYIVRVRTGNEEEFHFLKDDDA 670

Query: 650 EKSWHGS--INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
              +H    + + DI    +   V ++ +     I           +  + E     + +
Sbjct: 671 RIEFHSEFGVGDEDISGTVVREHVTDEGIKLQQRISLHEIFESTEMTKLLNELASAGMDV 730

Query: 708 -------------------ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
                                  + I++     L+D I +IGR+G+S+QRYKGLGEMN  
Sbjct: 731 HQFSKSEEARYHLVEHKGDEKKENTIELHSIIELVDNIRAIGRRGLSIQRYKGLGEMNPK 790

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           QL+ETT++P +R LL+V I DA+ AD +FS LMG++V  RR FI++N+L  + LD+
Sbjct: 791 QLFETTMDPKSRRLLKVDIADAAAADGIFSMLMGEDVPSRRAFIEDNALNVSHLDV 846


>gi|322436978|ref|YP_004219190.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164705|gb|ADW70410.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX9]
          Length = 898

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/878 (41%), Positives = 520/878 (59%), Gaps = 79/878 (8%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +D  + + Y A++I +L+GL AV+KRP+MYIG T GE GLHH++YEV+DN++DE+L GYA
Sbjct: 24  TDAAKAAGYSAENITVLEGLAAVRKRPAMYIGST-GEQGLHHLVYEVVDNSVDEALAGYA 82

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI--SAAEVIMTRLHAGGKFNQKSYKVSGG 119
             I VT+++D S TV D+GRGIP D     G+   A +V++T LHAGGKF+  +YKVSGG
Sbjct: 83  SRIDVTIHVDNSITVVDDGRGIPVDNKVINGVTMPAVQVVLTILHAGGKFDASNYKVSGG 142

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS    + I R+G  +EM +  G   + L   G +    GT+V FLP  
Sbjct: 143 LHGVGVSCVNALSEAFDVEIWRDGFAWEMDYAAGDPISELRKMGPSTRK-GTKVHFLPDK 201

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVS 234
            IFSV ++NYDTL +RLR+L+FLN  ++I+L D+R     + E +  +  Y GGI  F+ 
Sbjct: 202 TIFSVTEYNYDTLANRLRQLAFLNKGIEITLTDERQTETKTGEAKTQSFKYLGGIAEFIK 261

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            +++ K  L + PI ++  RDN+++++AM++ND Y E V  F NNI   DGGTHLSG ++
Sbjct: 262 LINKGKAVLHEKPIYMEAERDNVAMEIAMQYNDAYSETVFTFANNINTVDGGTHLSGFKT 321

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I +  +     K  K ++ GDD REG   V+S+K+  P+F  QTK KL +S++  
Sbjct: 322 ALTRTINAAGQSLGLFKDVKENLSGDDVREGLVVVISVKLSQPQFEGQTKGKL-NSDIAG 380

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V++FVN+ L A+LE++P  AK I+ K +DA+  R+AAR+ARDLTRRKG LD   LPGKL
Sbjct: 381 TVQAFVNERLGAFLEQNPQVAKKIINKAIDAARAREAARKARDLTRRKGALDGGGLPGKL 440

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCSER P + EL+LVEG+SAGG+AKQGR R+ QAILPL+GKILNVE+AR+DKML  +EI
Sbjct: 441 ADCSERQPDRCELYLVEGESAGGTAKQGRDRKFQAILPLKGKILNVEKARYDKMLGHEEI 500

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             +ITALG GIG+D FD++KLRY K+I+MTDADVDG+HIRTLLLTFFFR M  LI  G +
Sbjct: 501 RAMITALGCGIGKDDFDVSKLRYGKLILMTDADVDGSHIRTLLLTFFFRHMTELIKRGHV 560

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPL+ I +GK  QY+KDE    + ++ ++    +    +    I   DL  FI   
Sbjct: 561 YIAQPPLFRIKKGKFEQYIKDEREYVNVMVKRASDGMVITHGEGGARIEGADLTEFIGRL 620

Query: 595 LKIDKLIKDFYPN-----HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA--- 646
            +    +             + F E     G    + +   + +   ++  +L  +A   
Sbjct: 621 NEYLGFLDKVNKRLRNEDVTRAFTELFAHGGATPAKKEDFQSPAKLEEMKTKLQALAHEA 680

Query: 647 ----------EKSEKSWHGSINNSDILVKRIA--------------RGVQEQFVLEGSSI 682
                     ++  ++W  S  ++    ++I               +  Q +  L+G   
Sbjct: 681 QFRAVGEPVLDEEHQTWSVSFTDAQGAERKIDWALANAAESRQLLGKYAQIESQLKGPFH 740

Query: 683 FSFGSKY------------------------------------KRIFSNRIEENYLTILS 706
            S+ +K                                              E      S
Sbjct: 741 ISYAAKAAVPTPAAGSAEEAEATSQAEMDEADEVAQEEGINETIAAAPGTAAETKPGKRS 800

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              + D ++   P  + + +   GRK   +QRYKGLGEM A QLWETT++P+ R+L++VK
Sbjct: 801 NRASQDPVEKKTPREVFEYVIEQGRKEYQVQRYKGLGEMTAPQLWETTMDPERRTLMQVK 860

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + D +  +++F+ LMG++VE RR FI+EN+L    LDI
Sbjct: 861 LEDIAATEEIFTTLMGEDVESRRRFIEENALDVKNLDI 898


>gi|262277739|ref|ZP_06055532.1| DNA gyrase, B subunit [alpha proteobacterium HIMB114]
 gi|262224842|gb|EEY75301.1| DNA gyrase, B subunit [alpha proteobacterium HIMB114]
          Length = 834

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/841 (46%), Positives = 527/841 (62%), Gaps = 45/841 (5%)

Query: 1   MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    + + Y ADSI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G
Sbjct: 1   MSTAITKKTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V +N D S +VSDNGRGIP ++HK E ISAAEVIMT+LHAGGKF+ K+YKVSGG
Sbjct: 61  HCDTIVVKINKDNSVSVSDNGRGIPVEIHKTEKISAAEVIMTQLHAGGKFDHKTYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  LK+ I R+G  Y + F NGI   PL   G + +  GT VTFLPSS
Sbjct: 121 LHGVGVSVVNALSKSLKVDIFRDGKKYFVEFENGITKAPLKEIGKS-DLKGTNVTFLPSS 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY---- 235
           +IF+   FN   L+ RL+EL++LN  + I L D+R  + + +   + GGI+ FV      
Sbjct: 180 EIFTDTKFNLSILEKRLKELAYLNKGLNIQLSDERKEKAKILNFKFDGGIKEFVKDLNKL 239

Query: 236 ----LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
                +   +  ++ P+  Q ++++I ++ A+ WN  Y+ENVLCFTNNIPQKDGGTHL G
Sbjct: 240 KNKIKNEDSQFTLEEPLYFQSNKNDIDVECALLWNSSYNENVLCFTNNIPQKDGGTHLLG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+++TR I  Y       KKDK +++GDD REG   VLS+K+PDP+FSSQTKEKLVSSE
Sbjct: 300 FRNSITRLINKYANDFGLLKKDKVTIVGDDVREGLICVLSVKVPDPKFSSQTKEKLVSSE 359

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR VVE+  N+ +S W +++P  AK I+ K++ A++ R+ AR+AR+  RRK  +DI SLP
Sbjct: 360 VRPVVETITNEKISLWFDQNPKIAKTIIGKIIQAAVAREVARKARESVRRKNAIDITSLP 419

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE---------- 461
           GKLADC   D  K+ELF+VEGDSAGGSAKQ R+RE QA+LPLRGKILN            
Sbjct: 420 GKLADCQSNDINKTELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTFVEAKNNSPDV 479

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +  F KMLSS EI TLI A+GTG+  + F++ KLRY KI+IMTDADVDG+HIRTLLLTFF
Sbjct: 480 KKVFSKMLSSNEIVTLINAIGTGV--EPFELEKLRYGKIVIMTDADVDGSHIRTLLLTFF 537

Query: 522 -FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
             +    LI  G +YI +PPLY I  GK++ Y+K+E  LE   I  SL +   +   +  
Sbjct: 538 NNKPFNELIKKGHIYIAQPPLYKIKSGKTVNYLKNENDLEKLAIENSLKKIESVTFKNNK 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC---------ESDQEIN 631
             + +    FI  + ++ KLIK    + DK  +EQ  I G F           + + +  
Sbjct: 598 KFNYDK--TFIVQSYELYKLIKSI--DGDKEILEQLSIVGAFTKKDNIILITEDKNNQKK 653

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR 691
           +     +A  LN   EK +  W G   N   +++R       +  L+ + + +       
Sbjct: 654 LGAIKAVAENLNQNLEKDDSKWQGLFENDSFVLRREFYHELIEKRLDINFLSNNKVLTNL 713

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLW 751
              N+I   + +   +       K+      ++ I  IG+K +S+QR+KGLGEMN  +LW
Sbjct: 714 SKFNKIANIFQSSCVIKDGDVPHKVNSLIEFIEIIIEIGKKNLSLQRFKGLGEMNPDELW 773

Query: 752 ETTLNPDTRSLLRVKITDASQ--------ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           ETTLNP+  SLL+V  ++ +          D++F  LMG++V  R+ FI  N++    LD
Sbjct: 774 ETTLNPENNSLLKVNYSELNGEISEPSSSDDEIFFTLMGEDVSKRKNFINSNAINVSNLD 833

Query: 803 I 803
           I
Sbjct: 834 I 834


>gi|118474635|ref|YP_891213.1| DNA gyrase subunit B [Campylobacter fetus subsp. fetus 82-40]
 gi|118413861|gb|ABK82281.1| DNA gyrase, B subunit [Campylobacter fetus subsp. fetus 82-40]
          Length = 773

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/799 (43%), Positives = 498/799 (62%), Gaps = 32/799 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+  SGLHHMIYEV+DN+IDES+ GY D I +
Sbjct: 5   EKNYGAGNIKVLKGLEAVRKRPGMYIGDTN-ISGLHHMIYEVVDNSIDESMAGYCDTINI 63

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  +GSC V+DNGRGIP D+H  E ISAA V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 64  ELTREGSCIVTDNGRGIPVDIHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 123

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L L IKR+GN+Y   F  GI  N L       N TGT V F P  DIF V +
Sbjct: 124 VVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRTGTSVEFWPDDDIFEVTE 182

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L  R +EL++LN   +I++  K   +    T  ++GG+E+FV+  D +K   +  
Sbjct: 183 FDKQILSKRFKELAYLNP--RITINFKDQRDGFSETYHFEGGLESFVT--DINKSNPVSK 238

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  +++ +D A+ +N+ Y EN+L F NNI   DGGTH +G R+ LTR IT+Y+  
Sbjct: 239 AVSFSGGEEDVIVDFALLYNETYTENLLSFVNNIKTPDGGTHEAGFRAGLTRAITNYIAA 298

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +++S+K+P+P+F  QTK KL SS V+ +V+    D L  
Sbjct: 299 NAAAREKDTKITGDDIREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQKMTFDVLCK 358

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDPKKS 425
           + EE+P+EAK I+ K L A+  R+AA++ARDLTR+K  L+     PGKLADC  +DP +S
Sbjct: 359 YFEENPIEAKAIMNKALMAARGREAAKKARDLTRKKDSLNSVGTLPGKLADCQSKDPSES 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S+EI  +ITA G GI
Sbjct: 419 EIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSEEIKNMITAFGCGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ FD  KLRYHKIIIMTDADVDG+HI+TLLLTFFFR +  +I NG++Y+ +PPLY   
Sbjct: 479 GEE-FDPEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLTPIIENGYVYLAQPPLYRYK 537

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK   Y+KDE++L ++LI   +  E          +   DL +++        ++ D  
Sbjct: 538 KGKKEIYLKDEKALNEFLIETGIEGEDF------EGVGNKDLIDYLKIIAAYRSILMDLK 591

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
              +   + + +I      E+   I  +           + ++     +  +N  +I + 
Sbjct: 592 KRFNVLIVIRYMI------ENPDVIAKNYNELFEIIKKKLEDEKFNILNSYVNEDEIRIY 645

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
                  E+ V+  +   +   +       +++E  + +              P  +L+ 
Sbjct: 646 VQTENGLEELVINDNLFANPLYEEAVHIFTKMKERDIDLK-----------RDPVEVLED 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           I    +KG  +QRYKGLGEMN SQLWETT+NP+ R LL++ +++   A ++F   MGDEV
Sbjct: 695 IEKNAKKGAYIQRYKGLGEMNPSQLWETTMNPENRRLLKIDVSNLQTASEIFELFMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR++IQ ++     LD+
Sbjct: 755 EPRRDYIQAHAKDVKHLDV 773


>gi|78776204|ref|YP_392519.1| DNA gyrase subunit B [Sulfurimonas denitrificans DSM 1251]
 gi|78496744|gb|ABB43284.1| DNA gyrase subunit B [Sulfurimonas denitrificans DSM 1251]
          Length = 769

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/798 (42%), Positives = 485/798 (60%), Gaps = 32/798 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y A +I++LKGL+AV+KRP MYIGDT G  GLHH++YEV+DN+IDE++ GY + I VT
Sbjct: 2   ENYGASNIKVLKGLEAVRKRPGMYIGDT-GHRGLHHLVYEVIDNSIDEAMAGYCNTINVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +G+C VSDNGRGIPTD+H+ EG+SAA V++T LHAGGKF++ +YKVSGGLHGVGVSV
Sbjct: 61  LTKEGTCRVSDNGRGIPTDMHEGEGMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186
           VNALSS LK+ I+R G I+E +F  GI    L         TGT + F P   IF+    
Sbjct: 121 VNALSSDLKMTIQRNGEIHEQNFKKGIPQEAL-NVIGTTKKTGTTIEFSPDPSIFTETVI 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+ L  R +EL++LN  + I   D+R+    E     +GGI  +V+ L++ ++     
Sbjct: 180 FEYEYLARRFKELAYLNPFITIIFKDERTNVKEEYHF--EGGIAQYVTDLNKKQEVA--K 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                   ++I  D+++ +ND Y E V  F NNI   +GGTH +G R+ LTR I++Y  +
Sbjct: 236 VFVFSSKIEDIEFDISLMYNDTYDEKVYSFVNNIRTPNGGTHEAGFRAGLTRVISNYNTQ 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +K+    + G+D  EG  +V+S+++P+P+F  QTK KL ++ VR +V+    + LS 
Sbjct: 296 NGAAKEKDVKISGEDTSEGLIAVVSVRVPEPQFEGQTKGKLGNTYVRPLVQKATYELLSK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK IV K L A+  R+AA++AR+LTRRK  + + +LPGKLADC  +D    E
Sbjct: 356 YFEENPIEAKAIVAKSLMAARGREAAKKARELTRRKDSMSVGTLPGKLADCQSKDASICE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAK GR R  QAILPL+GKILNVE+AR DK+L S+EI  +ITA+G GIG
Sbjct: 416 LYLVEGDSAGGSAKMGRDRVFQAILPLKGKILNVEKARLDKILKSEEITNMITAMGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           ++ ++ +KLRYHK+IIMTDADVDG+HI+TLLLTFFFR   S+I NG+LY+ +PPLY   +
Sbjct: 476 EE-YNEDKLRYHKLIIMTDADVDGSHIQTLLLTFFFRHFRSVIENGYLYLAQPPLYRYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK   Y KD+ ++ D+LI   +             +  NDL ++          ++    
Sbjct: 535 GKKEIYFKDDRAMNDFLIENGIESL------EGQSVGHNDLLSYFKMVDHYRGSLEALKK 588

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            +    + +  I      E+   I + + +       F+A         +++   I +  
Sbjct: 589 RYALVELIRHFI------ENPDLIGLDIDNMYKKIEEFLALGGNNILTKTVSQDSIHIFV 642

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
             +G  E+ ++      +           +I+E  L                   +LD I
Sbjct: 643 QTKGGMEELLINDDLFGAPHFAEASFVYRKIKEWNLDFN-----------EDILVVLDNI 691

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
               +KG  +QRYKGLGEMN  QLWETT+ P+ R LL+V I DA  A D F+  MGDEVE
Sbjct: 692 IEYAKKGSYIQRYKGLGEMNPDQLWETTMTPENRVLLQVTIDDAELASDTFTLFMGDEVE 751

Query: 787 PRREFIQENSLPSA-LDI 803
           PRR +I+ ++     LD+
Sbjct: 752 PRRNYIETHAKDVKHLDV 769


>gi|115373779|ref|ZP_01461072.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1]
 gi|115369178|gb|EAU68120.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 774

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/776 (44%), Positives = 491/776 (63%), Gaps = 17/776 (2%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG---ISAA 96
           GLH ++YEV+DNA+DE+L GY   I+V +++DGS +V DNGRGIP   H +         
Sbjct: 4   GLHKLVYEVVDNAVDEALAGYCTEISVDIHVDGSLSVQDNGRGIPVGPHPDPKFHDKDTV 63

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           +V++T LHAG KF   +YKVSGGLHGVGV+ VN LS WLK+RI+R G +YE S+  GI D
Sbjct: 64  DVVLTELHAGSKFGNGAYKVSGGLHGVGVTCVNFLSEWLKVRIQRNGKVYEQSYSRGIPD 123

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             +   G   +  GT V F P + +    DF+++TL  RLREL+FLN+ + IS+ D+R+ 
Sbjct: 124 GKVKEVG-TTDKRGTLVWFKPDTQVMEAVDFDFETLSQRLRELAFLNAGLHISIRDERTN 182

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +  E    + GGI +FV YL++ K+ L   PI ++  ++ +S++LAM+WNDGY E +  F
Sbjct: 183 KEHE--FKFDGGIGSFVEYLNKSKQALHDKPIFVRTEKEGVSLELAMQWNDGYDERIYTF 240

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI   +GG+HLSG ++ALTR + SY EKS   K  K +  G+D REG  +V+S+K+ +
Sbjct: 241 ANNINTHEGGSHLSGFKAALTRTLNSYAEKSGLWKDLKETPTGEDAREGLAAVISVKLSN 300

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SE++ +VE  VND L+ +LEE+P   K +V K+ DA   R AAR+AR
Sbjct: 301 PQFEGQTKTKLGNSEIKGLVEQMVNDQLATYLEENPSNGKKVVAKIGDACRARIAARKAR 360

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +  RRKG+LD   LPGKLADC  RDPK+SEL++VEGDSAGGSAKQGR R NQAILPLRGK
Sbjct: 361 ETVRRKGILDGGGLPGKLADCQSRDPKESELYIVEGDSAGGSAKQGRDRRNQAILPLRGK 420

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARF+KML+S EI TLITALGTGIG + +D  K RY++II+MTDADVDG+HIRTL
Sbjct: 421 ILNVEKARFEKMLTSAEIITLITALGTGIGAEDYDPAKARYNRIILMTDADVDGSHIRTL 480

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LLTFFFRQM  L+  G+LYI +PPLY +TR K   YVKDE +L +YL+   ++ E     
Sbjct: 481 LLTFFFRQMRELLDLGYLYIAQPPLYKVTRNKKDLYVKDERALNEYLLR--IAAEHSRVV 538

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              G +  ++L++ ++  +  ++ ++      D   ++  V +     E+  +     A 
Sbjct: 539 TPNGELGGSELKSILEKVITYEERLEKQAKRRDARVVDALVQAARVKAETLADEKGLEAE 598

Query: 637 KLANRLNFIAE--------KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
                 +F           K E+      +   ++      G   + VL+ + + S    
Sbjct: 599 VDRMYADFRKRMPDVLGRVKHERRDDPEHHTKKLVFHTEINGSMRETVLDHAFLSSPEYL 658

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
                   +        ++  +G ++       +L  +    +KG+ +QRYKGLGEMN  
Sbjct: 659 ELVALREAVTGLGRPPYTVKVDGGEVTAFSVQEVLAVVRKDAQKGLGLQRYKGLGEMNPE 718

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           QLW+TT+NP TR+LL+V++ DA ++D +FS LMG+ VEPRREFI+ N+L    LDI
Sbjct: 719 QLWDTTMNPATRTLLQVQLKDAVESDGIFSLLMGEAVEPRREFIERNALDVQNLDI 774


>gi|299136177|ref|ZP_07029361.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602301|gb|EFI58455.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX8]
          Length = 880

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/869 (40%), Positives = 502/869 (57%), Gaps = 77/869 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           Q  +Y  ++I IL+GL AV+ RP+MYIG T GE GLHH++YEV+DN++DE+L G+A  I 
Sbjct: 18  QPGTYTGENITILEGLAAVRLRPAMYIGST-GEQGLHHLVYEVVDNSVDEALAGHATRID 76

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHK---EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           VT+++D S TV D+GRGIP D       E + A +V++T LHAGGKF+  +YKVSGGLHG
Sbjct: 77  VTIHVDNSITVVDDGRGIPVDNKTLPTGETMPAVQVVLTMLHAGGKFDASNYKVSGGLHG 136

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVS VNALS    + I R+G  +EM +  G   + L   G +    GT++ FLP   IF
Sbjct: 137 VGVSCVNALSEEFDVEIWRDGFTWEMDYSKGDPISELRKMGPSK-RRGTKIHFLPDKTIF 195

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGIEAFVSYLDR 238
           +V ++N+DTL +RLR+L+FLN  ++ISL D+R  + +  T      Y GGI  F+  L++
Sbjct: 196 TVTEYNFDTLANRLRQLAFLNKGIEISLTDERQVDTKGETKSQVYKYTGGIAEFIKLLNK 255

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L + PI ++  + N+ +++A+++ND Y E V  F NNI   DGGTHLSG R+ALTR
Sbjct: 256 GKQVLHEKPIYMETEQGNVVMEIALQYNDAYSETVFSFANNINTVDGGTHLSGFRTALTR 315

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I    ++    K  K ++ GDD REG  +V+S+K+P P+F  QTK KL +S++   V++
Sbjct: 316 TINVAGQQLGLFKDVKENLSGDDVREGLVAVVSVKLPQPQFEGQTKGKL-NSDIAGQVQA 374

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
           FVN+ L A+LE++P  A+ I+ K +DAS  R+AAR+ARDLTRRKG LD   LPGKLADCS
Sbjct: 375 FVNERLGAFLEQNPSVARKIINKAIDASRAREAARKARDLTRRKGALDGGGLPGKLADCS 434

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ER P+  EL+LVEG+SAGG+AKQGR R+ QAILPL+GKILNVE+AR+DKML  +EI  +I
Sbjct: 435 ERRPELCELYLVEGESAGGTAKQGRDRKFQAILPLKGKILNVEKARYDKMLGHEEIRAMI 494

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGIG+D FD  KLRY K+I+MTDADVDG+HIRTLLLTFFFR M  LI  G +YI +
Sbjct: 495 TALGTGIGKDDFDTAKLRYGKLILMTDADVDGSHIRTLLLTFFFRHMQELIKRGHVYIAQ 554

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPL+ I +GK  QY+KDE      ++ ++    I  + +    +   +L  ++       
Sbjct: 555 PPLFRIKKGKFEQYIKDEREYVQVMVKRASDGMIIRYGEGGSKLEGKELTKYMSQLNDYL 614

Query: 599 KLIKDFYPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK----- 648
                           + F E     G  +         +    +  RL  +        
Sbjct: 615 SFYDKVVKRLRNDEVVRAFAEIFANEGKDSVSRADFETDAKLKDMRARLKELERPELFKH 674

Query: 649 -SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
            SE  +        +        ++    +  +   +  S+       +I E  +    +
Sbjct: 675 VSEVEFDEEHRTYSVSFTDAQGALRH---INWTLASAPESRQLLGKHAQIREQLVGPFLI 731

Query: 708 ICNG----------------------------------------------------DKIK 715
              G                                                    D ++
Sbjct: 732 EYAGKNAAATTKSVEEQAEQDLEDTDEVELEGAVDVGTVAPVEAAKPVKRSAKVSQDPVE 791

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              P  + + +   GRK   +QRYKGLGEM A QLW+TT++P  R+LL+VK+ D +  ++
Sbjct: 792 RKTPREVFEYVIEQGRKEYQVQRYKGLGEMTAPQLWDTTMDPARRTLLQVKLEDIAATEE 851

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +F+ LMG++VE RR+FI+EN+L    LDI
Sbjct: 852 IFTTLMGEDVESRRKFIEENALDVKNLDI 880


>gi|307719924|ref|YP_003891064.1| DNA gyrase subunit B [Sulfurimonas autotrophica DSM 16294]
 gi|306978017|gb|ADN08052.1| DNA gyrase subunit B [Sulfurimonas autotrophica DSM 16294]
          Length = 772

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/800 (42%), Positives = 477/800 (59%), Gaps = 32/800 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A +I++LKGL+AV+KRP MYIGDT G  GLHH++YEV+DN+IDE++ GY D ITV
Sbjct: 2   QQEYGASNIKVLKGLEAVRKRPGMYIGDT-GHRGLHHLVYEVIDNSIDEAMAGYCDTITV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  +G+C VSDNGRGIPTD+H  E +SAA V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 61  TLTKNGTCKVSDNGRGIPTDMHPTENMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSS L + I REG I+E  F  GI   PL VTG+      T + F     IF+   
Sbjct: 121 VVNALSSDLHMTIYREGKIHEQDFKMGIPQGPLEVTGTTRKTG-TTIEFAADPSIFTETI 179

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y+ L  R +EL++LN  + I   D+R+          +GGI  +VS +++ +     
Sbjct: 180 TFEYEYLAKRFKELAYLNPFITIKFNDERTNTKEVYHF--EGGIAQYVSDMNKREVVAN- 236

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  ++I  D+A+ +ND Y E +  F NNI   +GGTH +G R+ LTR I++Y  
Sbjct: 237 -VYSFSGKAEDIEFDIAIMYNDSYEEKLASFVNNIRTPNGGTHEAGFRAGLTRVISNYNS 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+  +K+    + GDD +EG  +++S ++P+P+F  QTK KL ++ VR +++    + L+
Sbjct: 296 KNGAAKEKDVKISGDDVKEGLIAIVSARVPEPQFEGQTKGKLGNTYVRPLIQKATGEALN 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            + EE+P+EAK IV K L A+  R+AA++AR+LTRRK  + + +LPGKLADC  +D    
Sbjct: 356 KYFEENPIEAKAIVSKALMAARGREAAKKARELTRRKDSMSVGTLPGKLADCQSKDASIC 415

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAK GR R  QAILPL+GKILNVE+AR +K+L S EI  +ITA+G GI
Sbjct: 416 ELYLVEGDSAGGSAKMGRDRVFQAILPLKGKILNVEKARLEKILKSDEITNMITAMGCGI 475

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ ++  KLRYHKIIIMTDADVDG+HI+TLLLTFFFR    +I  G+LY+ +PPLY   
Sbjct: 476 GEE-YNEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRYFRDIIEKGYLYLAQPPLYRYK 534

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK   Y KD+ ++ DYLI+  +             +  NDL  +          ++   
Sbjct: 535 KGKKEIYFKDDRAMNDYLIDNGIESLDID------GVGHNDLVAYFKMVDHYASSLEALN 588

Query: 606 PNHDK-TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
             +     I   + +        +E+ V +   L +  N I   +       I+    L 
Sbjct: 589 RRYALVKLIRHFIENPDLIALPAKEMFVEIEKFLTSIGNNILTYTINEETNEIH----LF 644

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
            +   G++E  ++      +           +I E            D         +L+
Sbjct: 645 VQTQTGMEE-LLINDDLFSAPHFNEASFVYKKIMEW-----------DIHFDKDIIEVLE 692

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            I    +KG  +QRYKGLGEMN  QLWETT+ P+ R LL++ I DA  A D F+  MGDE
Sbjct: 693 DIKDYAKKGAYIQRYKGLGEMNPEQLWETTMTPENRVLLQISIEDAEVASDAFTLFMGDE 752

Query: 785 VEPRREFIQENSLPSA-LDI 803
           VEPRR +I+ ++     LD+
Sbjct: 753 VEPRRNYIETHAKDVKHLDV 772


>gi|223936717|ref|ZP_03628627.1| DNA gyrase, B subunit [bacterium Ellin514]
 gi|223894568|gb|EEF61019.1| DNA gyrase, B subunit [bacterium Ellin514]
          Length = 853

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/844 (42%), Positives = 502/844 (59%), Gaps = 47/844 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +      SYDA  I  L+GLD V+KRP MYIG TD E GLHH ++EV+DN+IDE L G+ 
Sbjct: 15  AKPEAGDSYDASKIDKLEGLDGVRKRPGMYIGPTD-ERGLHHCVFEVMDNSIDEHLAGFC 73

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             I VT+++DGS ++ DNGRGIP D H++  G+ A E ++T LHAGGKF Q +YK SGGL
Sbjct: 74  SKIEVTMHVDGSVSIRDNGRGIPVDSHEKTKGMPAVEFVLTHLHAGGKFGQGAYKYSGGL 133

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG   VNALS W K+ + R+  +Y M+F  G     L V GS+  +TGT +TF     
Sbjct: 134 HGVGAKCVNALSDWFKVEVSRDSKVYHMAFERGKTTETLKVIGSSK-NTGTLITFKADPT 192

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+   +F ++ L +RLREL+FLN  + I L D+R  E +    F++ G+  FV  L ++
Sbjct: 193 IFTITTEFKFEILANRLRELAFLNPGLVIQLTDER-AESKSEKFFFEDGVRDFVEQLGKN 251

Query: 240 KKPLMQSPIRIQGSRD-------------NISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           K+ +   PI + G R              ++ +D  +++ND Y + +LC+TN IP  DGG
Sbjct: 252 KQVIHPKPIVLNGRRPVKYKGKDGNEVEADMILDCVLQYNDSYSDQILCYTNAIPNPDGG 311

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           +H +G R+ALTR I  Y + +   K+   S+ GDD REG  +V++IK P+P F SQTK K
Sbjct: 312 SHSTGFRTALTRAINQYAKANNLIKEKDPSLTGDDVREGLVAVVAIKHPNPSFESQTKVK 371

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LV+ E   +V S   DGL A+ + +P  AK IV K L A      A R    T RK  L 
Sbjct: 372 LVTPEAEGIVSSITYDGLMAYFDGNPSAAKKIVDKGLTA-ARAREAARKARETVRKSALT 430

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              LPGKLADCS+RDP  +E+++VEGDSAGGSAKQGR R+ QAILP+RGK++NVE+AR D
Sbjct: 431 GGGLPGKLADCSDRDPANTEVYIVEGDSAGGSAKQGRDRKFQAILPIRGKLINVEKARLD 490

Query: 467 KMLSSQEIGTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           K+L + EI T+ITA+GTGIG    + SF+I KLRYHKIIIMTDADVDG+HIRTLLLTFF+
Sbjct: 491 KVLQNTEIRTMITAVGTGIGDGEGEGSFNIQKLRYHKIIIMTDADVDGSHIRTLLLTFFY 550

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           RQMP LI  GF+YI +PPLY I+R K ++YV+D+  L   LI  +  E           +
Sbjct: 551 RQMPQLIKGGFIYIAQPPLYQISRKKRVEYVEDDAQLNKILIQIATDEVRLRNITDGKEM 610

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNH--DKTFIEQ------AVISGVFNCESDQEINVSL 634
           S++ L   ++    +DK  +    +      +IE        +   +    S  +  V  
Sbjct: 611 SRSQLAEILELLESLDKFARAIRRHGGDFSDYIEHRNGQTGELPRHLVKVRSGNDETVHF 670

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILV----------KRIARGVQEQ----FVLEGS 680
                    F +E S+    G+   SD  +           R AR V+       V    
Sbjct: 671 FHTEEELAKFSSENSDLRLFGNEEESDTEILEKEKIKNGPSRRARHVELHESKAIVELLG 730

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
            + S G      +S + +  +  I           +     +LD++  +GR+GI ++R+K
Sbjct: 731 KLRSKGLD-IEHYSAQDKPLFELIEGEGEKQTVKPLFSIAEILDSVLEVGRRGIQIKRFK 789

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA+QL+ETT++P  R LLRV + DA +A+++FS+LMGDEVEPRR+FI++N+L   
Sbjct: 790 GLGEMNAAQLFETTMDPAKRKLLRVDLADAVEAEEMFSKLMGDEVEPRRQFIEDNALNVR 849

Query: 800 ALDI 803
            LD+
Sbjct: 850 NLDV 853


>gi|4033395|sp|O33367|GYRB_MYXXA RecName: Full=DNA gyrase subunit B
 gi|2578422|emb|CAA04176.1| DNA gyrase B subunit [Myxococcus xanthus]
          Length = 815

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/810 (41%), Positives = 478/810 (59%), Gaps = 26/810 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y  DSI  L+G +AV+KRP MYIGDT    GLH ++YEV+DNA+DESL G+   I V +
Sbjct: 17  EYGTDSITKLEGREAVRKRPGMYIGDTMA-YGLHKLVYEVVDNAVDESLAGHCTDIEVVI 75

Query: 69  NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++DGS +V DNGRGIP   H +  G    EV++T LHAG KF   +YKVSGGLHGVGV+ 
Sbjct: 76  HVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTC 135

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VN LS W K+R+ R G +YE ++  G+ D P    G   +  GT + F P + +  + +F
Sbjct: 136 VNFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVG-TTDKRGTHIAFKPDATVMELVEF 194

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           N++TL  RLREL+FLN+ + I + D+R+ +  +    + GGI +FV YL++ K+ L   P
Sbjct: 195 NFETLSQRLRELAFLNAGLHIVVRDERTNKEHD--FKFDGGISSFVEYLNKSKQTLHDKP 252

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I     R+ + +D+AM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + SY EK 
Sbjct: 253 ISFSTEREGVMLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKG 312

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VND L ++
Sbjct: 313 SLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSF 372

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEE P+ AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLADC  RDP +SEL
Sbjct: 373 LEETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQIRDPNESEL 432

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+    +ML+S EI TLITALG GIG 
Sbjct: 433 YIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKL-LREMLTSAEIVTLITALGNGIGA 491

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           + +D  K RYH+I +MTDADVDG+HIRTLLLT    +  S              Y +TR 
Sbjct: 492 EDYDPEKARYHRIFLMTDADVDGSHIRTLLLTSSSGRCRSSCRRAISTSRSRRSYKVTRN 551

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K  QYVKDE +L +YL+   ++ E        G +   +L+  ++  +  ++ ++     
Sbjct: 552 KKDQYVKDEHALNEYLLK--IASEHARVLTPGGELGGAELKALLEKVITYEERLEKQAKR 609

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667
            D   ++  V     + E+               +   +      W     +      R 
Sbjct: 610 RDARVVDALVQGARLSAETLTGRGCPGGGGEGRLMTPSSAACRTCWAACATSW----CRT 665

Query: 668 ARGVQEQFVLEGSSIFSFGSKYK-------------RIFSNRIEENYLTILSLICNGDKI 714
                  +    + +   G +               R+ +  +       +       +I
Sbjct: 666 PSTTPRSWCSTPTRMEPCGRRCSTTPSCRRRSTWSCRLCAEHLRGAGQGAVQGPRGRGEI 725

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +     +L  +    ++G+ +QRYKGLGEMN  QLW+TT+NP TR+LL+V++ DA ++D
Sbjct: 726 TVFSVQEVLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVRVEDAVESD 785

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ++FS LMG+ VEPRREFI+ N+L    LDI
Sbjct: 786 EIFSLLMGEAVEPRREFIERNALDVQNLDI 815


>gi|254457757|ref|ZP_05071185.1| DNA gyrase, B subunit [Campylobacterales bacterium GD 1]
 gi|207086549|gb|EDZ63833.1| DNA gyrase, B subunit [Campylobacterales bacterium GD 1]
          Length = 769

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/798 (42%), Positives = 483/798 (60%), Gaps = 32/798 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y A +I++LKGL+AV+KRP MYIGDT G  GLHH++YEV+DN+IDE++ G+ D I +T
Sbjct: 2   ENYGASNIKVLKGLEAVRKRPGMYIGDT-GHRGLHHLVYEVIDNSIDEAMAGHCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  + +C VSDNGRGIPTD+H  EG+SAA V++T LHAGGKF++ +YKVSGGLHGVGVSV
Sbjct: 61  LTKENTCRVSDNGRGIPTDMHPTEGMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186
           VNALSS LK+ I REG I+E +F  GI    L VT      TGT + F     IF+    
Sbjct: 121 VNALSSDLKMTIYREGEIFEQNFKKGIPQEILAVT-GKTRKTGTTIEFSADPSIFTDTVT 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+ L  R +EL++LN  + I   D+R+ +  E     +GGI  +V+ +  +KK ++  
Sbjct: 180 FEYEYLSKRFKELAYLNPFITIIFKDERTDKKEEYHF--EGGIAQYVADM--NKKAVIAQ 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                   ++I  D+A+ +N+ Y E +  F NNI   +GGTH +G R+ LTR I++Y  +
Sbjct: 236 VYSFTAKVEDIEFDIALMYNESYEEKLASFVNNIRTPNGGTHEAGFRAGLTRVISNYNAQ 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +K+    + G+D  EG  +++S ++P+P+F  QTK KL ++ VR +V+    + LS 
Sbjct: 296 NGAAKEKDTKISGEDASEGLIAIVSARVPEPQFEGQTKGKLGNTYVRPLVQKQTYELLSK 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK IV K L A+  R+AA++AR+LTRRK  + + +LPGKLADC  +D    E
Sbjct: 356 YFEENPIEAKAIVSKSLMAARGREAAKKARELTRRKDSMSVGTLPGKLADCQSKDASICE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAK GR R  QAILPL+GKILNVE+AR DK+L S+EI  +ITA+G GIG
Sbjct: 416 LYLVEGDSAGGSAKMGRDRVFQAILPLKGKILNVEKARLDKILKSEEITNMITAMGCGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           ++ ++  KLRYHK+IIMTDADVDG+HI+TLLLTFFFR   S+I NG+LY+ +PPLY   +
Sbjct: 476 EE-YNEEKLRYHKLIIMTDADVDGSHIQTLLLTFFFRHFRSVIENGYLYLAQPPLYRYKK 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK   Y KD+ ++ DYLI   +             I  NDL ++          +     
Sbjct: 535 GKKEIYFKDDRAMNDYLIENGIESL------DVEGIGDNDLVSYFRMVDHYRGSLVALER 588

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            +    + +  I      E+   I + + S       F+ +        SI +  I +  
Sbjct: 589 RYALVDLIRHFI------ENPDLIGLDIKSMYEKVEKFLVDNGNNILTKSITDEYIHIFV 642

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
             +   E+ ++      +           +I+E  +                   +L+ I
Sbjct: 643 QTKDGMEELLINDDLFSAPHFNEASFVFKKIQEWNINFD-----------EDILVVLENI 691

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
               +KG  +QRYKGLGEMN  QLWETT+ P+ R LL+V+I DA  A D F+  MGDEVE
Sbjct: 692 NEYAKKGAYIQRYKGLGEMNPDQLWETTMTPENRVLLQVQIEDAEVASDAFTLFMGDEVE 751

Query: 787 PRREFIQENSLPSA-LDI 803
           PRR +I+ ++     LD+
Sbjct: 752 PRRNYIETHAKDVKHLDV 769


>gi|149919818|ref|ZP_01908295.1| DNA gyrase subunit B [Plesiocystis pacifica SIR-1]
 gi|149819425|gb|EDM78856.1| DNA gyrase subunit B [Plesiocystis pacifica SIR-1]
          Length = 872

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/843 (43%), Positives = 513/843 (60%), Gaps = 52/843 (6%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YD  SI  L+GL+AV+KRP MYIGDTD  +GLH M++E+LDN+IDE+L G+   I + +
Sbjct: 34  AYDESSISHLEGLEAVRKRPGMYIGDTD-VTGLHKMVFEILDNSIDEALAGHCKQIQIVI 92

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEG--ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           + D S +V D+GRGIPT   + EG  + AA  + T+LH GGKF+  +YKVSGGLHGVGV+
Sbjct: 93  HEDESISVEDDGRGIPTGPMEVEGKMVPAAIAVFTKLHVGGKFDNAAYKVSGGLHGVGVT 152

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS WL+L IKREG ++   F  G +   L V G      GT+VTF     I++   
Sbjct: 153 VVNALSDWLELEIKREGKVFTARFERGEVARELDVVGETE-ARGTKVTFHADPLIYTGVR 211

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVS-------Y 235
            ++DTL  R RELS+L   V I+L D R      + RE +   +GG+ +FV         
Sbjct: 212 VDFDTLSSRFRELSYLTEGVNITLTDLRPTINGEKKREQSFDGEGGVASFVELLTAKRTR 271

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +    +   Q P   +G    + + +A++W D YHE V C+TNNI  +DGGTHL+GLR++
Sbjct: 272 IGAMIELRSQVPFEFEGQDHELGVQVALQWTDAYHEMVHCYTNNIANRDGGTHLTGLRTS 331

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +  Y       K  K S+ G+D REG  +++S+K PDP+F+SQTKEKLVSSEV ++
Sbjct: 332 LTRVVNGYAGDKNLLKGHKGSLAGEDVREGLVAIISVKHPDPKFNSQTKEKLVSSEVTAL 391

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V + V + LS   EE P +AK++V+K L A+  R AAR+AR+   RKGVLD  SLPGKLA
Sbjct: 392 VGTAVTEALSRHFEEKPKDAKLVVEKALLAARARAAARKARETITRKGVLDGLSLPGKLA 451

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP+ +ELF+VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR DK+LSSQEI 
Sbjct: 452 DCQEKDPELAELFIVEGDSAGGSAKQGRDRKVQAILPLRGKILNVEKARIDKILSSQEIV 511

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D++ I+KLRYHKIIIMTDADVDG+HIRTLLLTFFFR    +I  G+LY
Sbjct: 512 TLITALGTGIGEDTYSIDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRHFVEIIERGYLY 571

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           + +PPLY +  GK  +Y+K+E +L++++++ ++++            SK  L    +  +
Sbjct: 572 VAQPPLYKVKAGKKERYIKNEGALDEFIVSNAVADLELEI--GGAAASKEVLAEVANAGI 629

Query: 596 KIDKLIKDFYPNHDKTFIE--------------------------QAVISGVFNCESDQE 629
           + + +++     H +  +E                           A+   V        
Sbjct: 630 RYNNVLRSLEREHRRGILEGILGAIEARGWEAVEAAFEQGDDAFLAAMGQAVVEAAVPTM 689

Query: 630 INVSLASKLANRLNFIA-------EKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682
               +A+ L   L+ +        ++ E     +   + +    ++ GV     +    +
Sbjct: 690 PLTKVAASLRKVLDEVEAPAEGEGDEGEGEVQAARERTVLRFAVLSDGVTVNEDVGLPLL 749

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGISMQRYKG 741
            S   +        +       + L   GD I +      ++D +  +GR G+S+QRYKG
Sbjct: 750 RSTEIRELLRIRAELAARGEGAIKLRKKGDTIAEPKSLMQVIDHVGEVGRSGLSIQRYKG 809

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800
           LGEMN  QLWETT++P+ R LL++KI +   AD++F+ LMGDEV PRREFI EN+L +  
Sbjct: 810 LGEMNPDQLWETTMDPENRELLQIKIAEKDIADEVFTVLMGDEVAPRREFITENALNTRN 869

Query: 801 LDI 803
           LD+
Sbjct: 870 LDV 872


>gi|251771682|gb|EES52257.1| DNA gyrase, B subunit [Leptospirillum ferrodiazotrophum]
          Length = 810

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/818 (39%), Positives = 481/818 (58%), Gaps = 26/818 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++    +Y    I+IL+GL+AV+ RP MYIG T G  GLHH++YE++DN++DESL GY  
Sbjct: 2   NSQIQDTYGEQQIRILEGLEAVRVRPGMYIGST-GIDGLHHLVYELVDNSVDESLAGYCT 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V L+ D S TV DNGRGIPT +H E+  SAAEV++T LHAGGKF+  +YKVSGGLHG
Sbjct: 61  AIEVILHSDRSVTVKDNGRGIPTGMHPEQNRSAAEVVLTVLHAGGKFDNNTYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L I ++GN +   +  GI + PL         TGT + F P   I 
Sbjct: 121 VGVSVVNALSETLFLDIDQKGNHFRQVYHKGIPEAPLA-ITGTSETTGTSIRFYPDLTIM 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L HR REL +LN ++ I  I +     RE     +GGI +F+ +++ +K+ 
Sbjct: 180 ETDAFSFDVLAHRFRELGYLNPALTI--ILREEETLREEVFHDEGGIRSFLLFVNENKRT 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           +       +   +  + +++ ++ D    E +L + NNIP ++GGTH+ G R+ALTR + 
Sbjct: 238 IHDPLSFRKSFDNGSTFEISFQYQDTTDAETLLSYVNNIPTREGGTHVRGFRAALTRVVN 297

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            +++    +K ++    G+D REG ++++SIK+P+P+F  QTK KL SS V   +E+F+ 
Sbjct: 298 RFIKDKNLNKGEEVR--GEDIREGLSAIVSIKIPNPQFEGQTKAKLGSSWVSGAMETFLA 355

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L    E+    A+ I  K + ++  R+AAR+AR+LT+RK VL+ ++LPGKLADC E D
Sbjct: 356 EALEDAFEKQGAVARAIADKAILSAQAREAARKARELTKRKNVLEGSNLPGKLADCQEND 415

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FDKMLSSQEIGTLITA 480
           P KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+++  +K ++  E+  LITA
Sbjct: 416 PAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSKGVEKFITHDEVRALITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G + F +  LRYHKIIIMTDADVDGAHIRTLLLTFFFR M  LI   ++YI +PP
Sbjct: 476 VGCGLGAEEFSLKNLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNLLIDGSYVYIAQPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY +   K  +Y+ ++++LE +++ ++  +      ++   +   +    +    + ++ 
Sbjct: 536 LYKVAFQKQERYLLNDQALEAFILEKASEKVDFSASEAGPWLEGEEAVKRLLVLSRYEQE 595

Query: 601 IKDFYPNHDKTFIEQAV-ISGVFNCE--SDQEINVSLASKLANRLNFIA-------EKSE 650
           +K +        +     +    + E    +E   +       R    +           
Sbjct: 596 VKYWTNRVGHGPLLALFGLYPSLSGEILHHEEEARAFVEFCRARYGESSGGGVLEGTVHP 655

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIF--SFGSKYKRIFSNRIEENYLTILSLI 708
               G      ++ +    G + +  L+ +       GS+  RI      E       + 
Sbjct: 656 VEGSGDTPLLRLVFESRQLGYESRLTLDPALFGGMVGGSRSLRILRT---EGLQGPYRIR 712

Query: 709 CN--GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
               G+      P ++L  +    R  I++QRYKGLGEMN  QLWETT++P  R+LL+V 
Sbjct: 713 DRESGEVRTFNSPGAVLAAVTGPVRSKITLQRYKGLGEMNPEQLWETTMDPAKRTLLKVS 772

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           I D  +AD +F+ LMGD+V PRREFI++N+L    LDI
Sbjct: 773 IPDYLEADRIFTILMGDQVAPRREFIEQNALDVSNLDI 810


>gi|237753472|ref|ZP_04583952.1| DNA gyrase subunit B [Helicobacter winghamensis ATCC BAA-430]
 gi|229375739|gb|EEO25830.1| DNA gyrase subunit B [Helicobacter winghamensis ATCC BAA-430]
          Length = 770

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/805 (43%), Positives = 494/805 (61%), Gaps = 41/805 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +++  Y   SI++LKGL+AV+KRP MYIGDT   +GLHH+IYEV+DN IDE++ GY   I
Sbjct: 1   MEDLEYTGQSIKVLKGLEAVRKRPGMYIGDTS-TNGLHHLIYEVVDNCIDEAMAGYCTKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  +G   ++DNGRGIP D+H  E I AA V +T LHAGGKF+QK+Y  SGGLHGVG
Sbjct: 60  DVILTKNGGAKITDNGRGIPVDIHPTENIPAATVALTILHAGGKFDQKTY--SGGLHGVG 117

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS+ L++ I +   IY   F  GI  N L + G    + GT + F+P S IF V
Sbjct: 118 VSVVNALSTSLQMTIYKHNKIYRQDFSQGIPQNDLEIIGETK-ENGTTIEFIPDSSIFEV 176

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+ + L+ R +EL++LN  + I   D+R           +GG+  F++  D +KKP +
Sbjct: 177 VEFDKEILKKRFKELAYLNHQITIHFSDERDGFSEIYHF--EGGLSQFIT--DINKKPAI 232

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            S +  +G  + + +++A+ +N+G+ E VL F NNI   +GGTH +G R+ LTR I +Y+
Sbjct: 233 VSILGFEGKDEGVEVEVALTYNEGFDEKVLSFVNNINTSEGGTHEAGFRAGLTRTIMNYI 292

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E +  +++    + GDD REG  +++S+++ DP+F  QTK KL S+ V+ +V+    + +
Sbjct: 293 EANANAREKDSKITGDDIREGLVAIVSVRVIDPQFVGQTKGKLGSTFVKPIVQKLTYEKI 352

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S + EE+P EAK I++K L A+  R+AA++AR+LTR+K    + +LPGKLADC  +DP  
Sbjct: 353 SKYFEENPNEAKAIMQKALLAARGREAAKKARELTRKKESFSVGTLPGKLADCQSKDPSI 412

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S+EI  LITALG G
Sbjct: 413 SELYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLITALGCG 472

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDI K RY+KIIIMTDADVDG+HI+TLL+TFFFR +  +I  G+LYI +PPLY  
Sbjct: 473 IGEE-FDIEKARYNKIIIMTDADVDGSHIQTLLMTFFFRYLKGIIEAGYLYIAQPPLYRF 531

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK   Y+KDE++L +YLI   +             I   DL  F          +++ 
Sbjct: 532 KKGKKEIYLKDEKALSEYLIENGIENFEFS------GIGNKDLMEFFKITAHYRTTLQNL 585

Query: 605 YPN-----HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                     K  IE   + G  N +  Q I   + +   N LN + ++ +   +   + 
Sbjct: 586 KKRFSLIEIVKFLIENPDLIGAKNSDLVQAIKEKITALHFNILNEMIDEEKIHLYVQTDA 645

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             + +K           ++         +  R    +++E  L  L    NG+      P
Sbjct: 646 GLVDIK-----------IDDELFTHPLFEEARYVYEKMQERDLDFL----NGE-----DP 685

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            ++L+ I    +KG  +QRYKGLGEMN  QLWETT+ P+ R L+RV+I D   A D+FS 
Sbjct: 686 IAMLEKIEDSSKKGAYIQRYKGLGEMNPEQLWETTMTPENRRLIRVEIKDDGTASDVFSL 745

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
            MGDEVEPRRE+IQ ++     LD+
Sbjct: 746 FMGDEVEPRREYIQAHAKDVKHLDV 770


>gi|91203531|emb|CAJ71184.1| strongly similar to DNA gyrase subunit B [Candidatus Kuenenia
           stuttgartiensis]
          Length = 820

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/829 (43%), Positives = 513/829 (61%), Gaps = 35/829 (4%)

Query: 1   MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M++N      ++  +YDA SI+ L G++AV+KRP+MYIGDT   +GLHH++ E++ N++D
Sbjct: 1   MTNNDTLDAVLEADAYDATSIKTLGGIEAVRKRPAMYIGDTTA-NGLHHLVEEIVCNSVD 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+ + I V +N+DGS TV D+GRGIP D+HKE   SA EV+MT LHAGGKF  KSY
Sbjct: 60  EALAGFCENIAVKINVDGSVTVVDDGRGIPVDIHKETNKSALEVVMTMLHAGGKFEHKSY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           K SGGLHGVGVSVVNALS W ++ +KR G++Y   +  G +  P+   G      GT++ 
Sbjct: 120 KTSGGLHGVGVSVVNALSEWFEVEVKRNGHVYFQRYEKGEVITPVETRGITK-KRGTKIV 178

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P  +IF    F Y+T+  RLRE +FLN  ++I+  D+++ +    T  Y+GGI AFV 
Sbjct: 179 FKPDHEIFEDTAFCYETIAKRLREYAFLNKGLKITFTDEKTDKN--ETFQYEGGIRAFVE 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            L+  K+ + +  I ++   + I +++A ++N+ Y+EN+  F NNI   +GGTHLSG R+
Sbjct: 237 ELNSGKEMIHKDIIYLEKEINEIVVEVAFQYNESYNENIYSFANNINTVEGGTHLSGFRA 296

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+ K+   + ++++  GDD +EG T+V+SIK+P+P+F  QTK KL + EV+ 
Sbjct: 297 ALTRTLNNYL-KNKKIQGEEKAPTGDDYKEGLTAVISIKLPEPQFEGQTKTKLGNREVQG 355

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE+ + + L  + EE P  AK I+ K ++AS  R+AAR+ARDLTRRKG L  ++LPGKL
Sbjct: 356 IVETIIGEQLGIYFEETPSTAKAIINKGIEASRAREAARKARDLTRRKGALSSSNLPGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS RD + SELFLVEG SAGG+AKQGR R  QAILPL+G ILNVE+AR DKMLS++EI
Sbjct: 416 ADCSSRDFETSELFLVEGISAGGTAKQGRDRRVQAILPLKGVILNVEKARIDKMLSNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            TLI+ALGTGIG D F++  LRY KIIIMTDAD+DGAHIRTLLLTFFFRQM  LI  G +
Sbjct: 476 RTLISALGTGIGIDDFNLKNLRYAKIIIMTDADIDGAHIRTLLLTFFFRQMIELIDKGHV 535

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF-CDSKGVISKNDLRNFIDD 593
           YI +PPL+ I + K  +Y+ D++ L+  LI   +   +     D K  +    L   +  
Sbjct: 536 YIAQPPLFKIVKNKRQEYIYDDKGLQKKLITFGIEGTVMEICSDKKETLDSQTLEKLLPL 595

Query: 594 ALKIDKLIKDFYPNHDK------------------TFIEQAVISGVFNCESDQEINVSLA 635
            +++++ IK                              +  I+ + + E  +       
Sbjct: 596 LVQMEEHIKFLSKKGVSLRKFLSLRNKETGKLPYYKVTYKDKITYLSSEEDLEAYIKEKQ 655

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
            K    L  + E              I V       + +  +  + I  FG      F  
Sbjct: 656 QKEGKELEILEEDDMADEKEKGEGGAIEVIEYHECKEIEKTI--NLIEGFGFTIDEYFRG 713

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755
           + +E       LI    +I       +L+ I  I RKG+ +QRYKGLGEMNA +L ETT+
Sbjct: 714 QNDE--KPKYKLIAGESEINAFSLNEILEKIREIARKGMEIQRYKGLGEMNAEELAETTM 771

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           N +TR+LL+VK+ DA++AD +FS L G +V+ RREFI++++L    LDI
Sbjct: 772 NFNTRTLLKVKVEDAAKADSIFSTLAGKDVQRRREFIEKHALEVRNLDI 820


>gi|224372073|ref|YP_002606445.1| DNA gyrase subunit B [Nautilia profundicola AmH]
 gi|223589802|gb|ACM93538.1| DNA gyrase, B subunit [Nautilia profundicola AmH]
          Length = 758

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/800 (42%), Positives = 479/800 (59%), Gaps = 47/800 (5%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A +I++LKGL+AV+KRP MYIGDT    GLHH+IYEV+DN+IDE++ GYA+ I V 
Sbjct: 2   SDYGAKNIRVLKGLEAVRKRPGMYIGDTS-VKGLHHLIYEVVDNSIDEAMAGYANEIKVK 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS  +SDNGRGIP D+H EE I AA V++T LHAGGKF+ K+YKVSGGLHGVGVSV
Sbjct: 61  INKDGSAEISDNGRGIPVDIHPEEKIPAATVVLTVLHAGGKFDNKTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNAL+  L + IKR+G I+   F  G     L V G   N TGT + F P  +IF    F
Sbjct: 121 VNALAKKLIMTIKRDGKIWRQEFERGKPVTDLEVIG-TTNRTGTTIQFWPDEEIFETTTF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS--YLDRHKKPLMQ 245
             + LQ RL+EL++LN ++ I    +   +  +    Y+GGI+ FV           ++ 
Sbjct: 180 KSEILQKRLKELAYLNPNITIKF--ENENDGVKEVYHYEGGIKDFVKTLTNKECISDVIY 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                      + +++A+ ++ GY E VL F NNI   +GGTH SG ++ L++ + +Y+ 
Sbjct: 238 FTDHYSDEEKALDVEVALCYDSGYDEKVLSFVNNIRTPEGGTHESGFKAGLSKAVINYIN 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K +   + GDD +EG  +++S+KM +P+F  QTK KL SS V+ + +    + L+
Sbjct: 298 KNIKLK-ENLKITGDDVKEGLNAIVSVKMSEPQFEGQTKGKLGSSYVKPITQKVTYEYLT 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            + EE+P EAK+I +K + A+  R AA+RARDLTR++  + + +LPGKLADC  +DP +S
Sbjct: 357 RFFEENPNEAKLIAEKAIAAARSRIAAKRARDLTRKQAKVGVGTLPGKLADCQSKDPVES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR R  QAILPLRGKILN +++   K LSS+EI  +ITALGTGI
Sbjct: 417 ELYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNTQKSTDAKALSSEEIKNIITALGTGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D FDI+K+RY+KIIIMTDADVDG+HI+TL++TFFF  +  +I NG+LYI +PPLY   
Sbjct: 477 GED-FDIDKIRYNKIIIMTDADVDGSHIQTLIMTFFFNHLREVIENGYLYIAQPPLYRYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  +Y+KD++ L ++LI Q ++            + K +L+  +  A     L+    
Sbjct: 536 KGKIEKYLKDDKELNEFLIEQGINSIDI------TGVGKPELKELLKYAALYKLLLDRLS 589

Query: 606 PNHD-KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
              +    I   + +G             L   L +    I  K +  ++   N      
Sbjct: 590 KRFNIPEVIRFLIENGNL---------EELPKFLESLGFNIISKHDDHYYIQTN------ 634

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
               RG++E   ++   +        +    +++E              I       LLD
Sbjct: 635 ----RGLEE-ITIDDKLLNHQLFVEAKKVYQKLQEY-----------KDIIDRDYLELLD 678

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +    RKG  +QRYKGLGEMN  QLWETT+NP+ R L++V + DA  A + F   MG E
Sbjct: 679 EVVEKARKGAHIQRYKGLGEMNPEQLWETTMNPENRVLIQVTMDDAQNAAEKFELFMGSE 738

Query: 785 VEPRREFIQENSLPS-ALDI 803
           V PRREFIQ N+     +D+
Sbjct: 739 VGPRREFIQANAKEVENIDV 758


>gi|284041476|ref|YP_003391816.1| DNA gyrase B subunit [Conexibacter woesei DSM 14684]
 gi|283945697|gb|ADB48441.1| DNA gyrase, B subunit [Conexibacter woesei DSM 14684]
          Length = 808

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/805 (42%), Positives = 491/805 (60%), Gaps = 10/805 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
               + SYDA  I +L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L G+A 
Sbjct: 10  KPTPSPSYDAQDITVLEGLEAVRKRPGMYIGST-GIRGLHHLVYEVVDNSVDEALAGHAS 68

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS-YKVSGGLH 121
            + VT++ D S TV DNGRGIP  + ++EG  A EV++T LHAGGKF     YKVSGGLH
Sbjct: 69  AVDVTIHPDNSITVVDNGRGIPVAMMEKEGKPAVEVVLTVLHAGGKFGDGGGYKVSGGLH 128

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ I R+G  +   ++ G     L   G A ++TGT +TFLP  +I
Sbjct: 129 GVGVSVVNALSEQLRVEIFRDGFAWSQDYVRGAPQGQLER-GEATSETGTTITFLPDDEI 187

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
               DF++ TL+ RLRE +FL   ++ISL D+R  E R +   Y GGI+ FV+YL+ +K 
Sbjct: 188 MESLDFDFTTLEERLRETAFLTRGLRISLTDER-GERRHVEFQYDGGIQDFVAYLNENKD 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ +  +      D  ++++AM+WN  Y E+V  F NNI   +GG+HLSG RSALTR I 
Sbjct: 247 PVQRKIVYFSSESDEGAVEVAMQWNSSYQESVFSFANNINTHEGGSHLSGFRSALTRTIN 306

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  +    K+   ++ G+D REG T+V+S K+ +P+F  QTK KL +  ++   ES VN
Sbjct: 307 KYAREKGFLKERDANLAGEDVREGLTAVISAKLAEPQFEGQTKTKLGNPGMQGFTESIVN 366

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
            GL  +LEE+P +A+ ++ K + A+  R AAR+ARDLTRRK  L+ + LPGKLADCS +D
Sbjct: 367 KGLDEFLEENPQDARSVILKAVQAAQARSAARKARDLTRRKSALENSRLPGKLADCSVKD 426

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILNVERAR DK+L + E+  LITA+
Sbjct: 427 PALSEIFIVEGDSAGGSAKQGRDRSTQAILPLRGKILNVERARIDKVLGNNEVQALITAI 486

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG+ +D FD+ K RYHKII+MTDADVDGAHIRTL+LT  FR+M  LI  GF+YI KPPL
Sbjct: 487 GTGV-RDDFDLEKARYHKIILMTDADVDGAHIRTLVLTLLFREMMPLIDAGFIYIAKPPL 545

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV-ISKNDLRNFIDDALKIDKL 600
           Y + +GK+ +Y++ +  LE+ L++  L              +++   + F     +    
Sbjct: 546 YKLKQGKNERYIEKDSELEEMLLSDKLERFSIFDRTGAETRLTEARWKRFTRLLKQYGGW 605

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                       ++    SG+       E  ++   +     +  A   E      +  +
Sbjct: 606 ASALRALSSHDVVDFLHESGILEANVTDEGALARLLRQPEA-DGAAFSVELVGEDEVELT 664

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI-EENYLTILSLICNGDKIKITGP 719
              ++R   G      +  + + +   +      +++ +        +     +      
Sbjct: 665 VRSIERKT-GHARTRHVRRAMLQANEYRQLARVHDQLVQAVGTPPFDIRLGDHRETAVSF 723

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             L   +  +  +G+ + R+KGLGEMNA QL ETT++P TR+L RV + DA+ A+ +FS 
Sbjct: 724 DELRSRVMDMAGRGVEINRFKGLGEMNAEQLRETTMDPATRTLARVTMEDAAAAERVFSM 783

Query: 780 LMGDEVEPRREFIQENS-LPSALDI 803
           LMGD+VEPRR FI+EN+ L + LD+
Sbjct: 784 LMGDQVEPRRNFIEENASLVTNLDV 808


>gi|254797071|ref|YP_003081909.1| DNA gyrase, B subunit [Neorickettsia risticii str. Illinois]
 gi|254590317|gb|ACT69679.1| DNA gyrase, B subunit [Neorickettsia risticii str. Illinois]
          Length = 758

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/777 (49%), Positives = 521/777 (67%), Gaps = 22/777 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  SGLH M+YEV+DN++DESL GY   I V +++DGS  V DNGRG+PTD+H 
Sbjct: 1   MYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAIEVVIDVDGSILVKDNGRGMPTDMH- 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
            EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WLKL I R+G I+   
Sbjct: 60  GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVGVSVVNALSDWLKLTIYRDGKIHFAE 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF-NYDTLQHRLRELSFLNSSVQI 208
           F NG     L VTG  G+ TGT V FLPS   F      ++ TL++R RELSFLN  +++
Sbjct: 120 FRNGETVRSLSVTGECGDKTGTLVHFLPSRSTFKNTTEVSFSTLENRFRELSFLNPGLEV 179

Query: 209 SLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           SL+D ++     ++  F  GG E FV+YLDR K+P+  SPIRI G  D+I +D++++WND
Sbjct: 180 SLLDMRKGGSTGKVIFFSSGGTEEFVAYLDRSKQPIHPSPIRILGGVDSIVMDISIQWND 239

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y+ENVLCFTNNI QKDGGTHL+ LRSA+TR + +Y+ K    KK+K  V G+D REG T
Sbjct: 240 SYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMHNYIVKENLIKKEKVVVSGEDVREGLT 299

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           ++LS+K+PDP+FSSQTKEKL+SSEV+ V+E  V+D L++WLEE+P  A++I KKV+++++
Sbjct: 300 AILSVKLPDPKFSSQTKEKLISSEVKPVIEKVVSDALASWLEENPSAARVIAKKVVESAL 359

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AA++ARDLTRRKG L+I +LPGKLADC E+ P+ SEL +VEGDSAGGSAKQGR R+ 
Sbjct: 360 AREAAKKARDLTRRKGGLEITTLPGKLADCQEKSPELSELLIVEGDSAGGSAKQGRDRKT 419

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QA+LPLRGKILNVE+ RF K++ S EIG LI ALGT IG++ F+I+K+RYHK+IIMTDAD
Sbjct: 420 QAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALGTSIGEEEFNIDKIRYHKVIIMTDAD 479

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDG HIRTLLLTFFFR    ++  G+LYI + PLY + R  +  Y++D+ +LE+YL+ + 
Sbjct: 480 VDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLYKVMRKGTDVYLRDDAALEEYLLERI 539

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
           +  +      +  V +   L+  +   L + K+++ F        +E   + G       
Sbjct: 540 IKGKEL-IGANGEVYTGQALKRIVQQCLVLSKILEKFDYRIPLEILEVVFLCG------- 591

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
                +    LA R   +A  S  +W     +S +  +R  +G++ ++      + S   
Sbjct: 592 ---ETADPQLLAER---VALTSFGTWTVVREDSSLFFERTFQGLRNRYEYSPLFV-SEDI 644

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747
           +        I + +    +   N +   +       D   S  R G+ +QR+KGLGEMN 
Sbjct: 645 EKMAKIREAISDIFYPGFARFNNKEYYSVLAFVRDAD---SAARAGMVLQRFKGLGEMNP 701

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            QLW TTL+P  R++ +V I +A+ AD + S LMGD V PRR+FI  N+L +  +D+
Sbjct: 702 EQLWSTTLDPSNRTIFKVTIEEAAVADQMCSMLMGDAVGPRRDFIVNNALNASNIDV 758


>gi|187735779|ref|YP_001877891.1| DNA gyrase, B subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425831|gb|ACD05110.1| DNA gyrase, B subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 852

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/845 (42%), Positives = 491/845 (58%), Gaps = 52/845 (6%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
                 Y A  I  L+GL+AV+KRP MYIGD D E GLHH ++EVLDN+IDE L GY   
Sbjct: 15  TTAQHEYGAAQIDKLEGLEAVRKRPGMYIGDPD-ERGLHHCVFEVLDNSIDEHLAGYCSK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I + +++DGS ++ DNGRGIP D+H + GI A E+++T LHAGGKF Q +YK SGGLHGV
Sbjct: 74  IDIVIHVDGSISIVDNGRGIPVDIHPKFGIPAVELVLTNLHAGGKFGQGAYKYSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIF 182
           G   VNALS W K  ++R+G  Y++ F  G    PL   GS   + TGT +TF P + IF
Sbjct: 134 GAKCVNALSDWFKAEVRRDGKRYQIKFERGKTVEPLRTVGSCACEVTGTTITFFPDATIF 193

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +    F +D L  RLREL+FLN  + I LID+R    R  T FYK GI  FV  L  +K+
Sbjct: 194 TDTTEFKFDRLTTRLRELAFLNPGLVIELIDEREAPARRETFFYKDGIVEFVRQLGTNKE 253

Query: 242 PLMQSPIRIQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            + + PI I G R            D++ +D+  ++N+ Y  N+LCF N+I   DGGTHL
Sbjct: 254 VINEDPISISGVRKVEVEYDGKKMEDDVLVDVVFQYNNTYETNILCFANSIYNGDGGTHL 313

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG R ALTR I  Y + +   K+   S+ G+D REG  +V+S+KMP+PRFSSQTK+KLV+
Sbjct: 314 SGFRGALTRVINGYAKANGLLKEKDPSLSGEDVREGLVAVISVKMPNPRFSSQTKDKLVN 373

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +E+  VV + V + +  + EE+P  AK I++K + A      A R    T RK  L I  
Sbjct: 374 TEIEGVVGNVVYEEIKTYFEENPAMAKKIIEKSITA-ARAREAARKARETVRKSALSIGG 432

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS+RDP K ELF+VEGDSAGGSAK GR R  QAILPLRGK+LNVE+AR DK L
Sbjct: 433 LPGKLADCSDRDPAKCELFIVEGDSAGGSAKMGRDRRTQAILPLRGKVLNVEKARLDKAL 492

Query: 470 SSQEIGTLITALGTGIGQDS----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            S+EI  +ITA+G GIG+      F ++++RYHKIIIMTDADVDGAHIRTLLLTFF R M
Sbjct: 493 GSKEIQNMITAIGAGIGEGDDEASFKLDRVRYHKIIIMTDADVDGAHIRTLLLTFFCRHM 552

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P L+  G+LYI + PLY I R K  +YV+D+ +L   LI  ++++    F D     S  
Sbjct: 553 PQLVRAGYLYIAQAPLYRIIRRKKEEYVQDDVALNRKLIELAVNDVTLRFADGSRSFSPE 612

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF- 644
           +L   ++  + + +  +          +E  +     N E  + +           L F 
Sbjct: 613 ELSAILETLVNLQRYTESMQAQGGS--LEDLLSHRETNGEFPEFLVKVRCGNEEEILFFH 670

Query: 645 -------------------IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
                                 + E   +          + I   + E   +  +     
Sbjct: 671 DMEALTAFSEENRDLFIFGTPSEEELLENPLPEREGPSRRSITHELHEAKAITRALARLA 730

Query: 686 GSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQRYKG 741
                 I  N I      +  L+   GDK K+T       +L+++ SIG++G+ + R+KG
Sbjct: 731 E---LGIPGNMIVSMDTPLFELVEGEGDKEKVTPLFSVMDILESVISIGKRGVEITRFKG 787

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           LGEM+A  L++TT++P+ R LLRV + D  A +AD++F+ LMGD VEPR+ +I +++L  
Sbjct: 788 LGEMDAKDLFKTTMDPERRELLRVILNDDNAVRADEMFTILMGDVVEPRKNYIVDHALNV 847

Query: 800 -ALDI 803
             LDI
Sbjct: 848 RNLDI 852


>gi|149194734|ref|ZP_01871829.1| DNA gyrase subunit B [Caminibacter mediatlanticus TB-2]
 gi|149135157|gb|EDM23638.1| DNA gyrase subunit B [Caminibacter mediatlanticus TB-2]
          Length = 758

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/798 (41%), Positives = 467/798 (58%), Gaps = 43/798 (5%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A++I++LKGL+AV+KRP MYIGDT  E GLHH+IYEV+DNAIDE++ GYA  I V 
Sbjct: 2   AKYGAENIKVLKGLEAVRKRPGMYIGDTS-EKGLHHLIYEVVDNAIDEAMAGYATEIKVK 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS T+SDNGRGIP D+H EE I AA V++T LHAGGKF+ K+YKVSGGLHGVGVSV
Sbjct: 61  INKDGSVTISDNGRGIPVDIHPEEKIPAATVVLTVLHAGGKFDNKTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  L + IKR+G IY+  F  G     L V G+  N TGT + F P  +IF   +F
Sbjct: 121 VNALSKKLIMTIKRDGKIYKQEFERGKPITDLEVIGNT-NRTGTTIQFWPDEEIFDSVEF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
               LQ RL+EL++LN ++ I   D+R                            ++   
Sbjct: 180 KPQILQKRLKELAYLNPNITIYFEDERHNIKEVYHFEGGIKDFVKTLTNKELITDVIYYN 239

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +      ++ +++A+ ++ GY E VL F NNI   DGGTH SG ++ L++ I +Y+ K+
Sbjct: 240 KQYSDEEKSLDVEVALCYDSGYDEKVLSFVNNIRTPDGGTHESGFKAGLSKAIINYINKN 299

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
               KD   V  DD +EG  +++S+KM +P+F  QTK KL SS V+ +V+    + L+ +
Sbjct: 300 -MKLKDNIKVTADDVKEGLNAIVSVKMSEPQFEGQTKGKLGSSYVKPIVQKVTYEYLTRF 358

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EE+P  AKII +K + A+  R AA++AR+LTR++  + + +LPGKLADC  ++P ++EL
Sbjct: 359 FEENPNTAKIIAEKAIAAARSRIAAKKARELTRKQAKIGVGTLPGKLADCQTKNPDEAEL 418

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           +LVEGDSAGGSAKQGR R  QAILPLRGKILN +++   K LSS+EI  +ITALGTGIG 
Sbjct: 419 YLVEGDSAGGSAKQGRDRYFQAILPLRGKILNTQKSTDAKALSSEEIKNIITALGTGIGS 478

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FD +K+RY KIIIMTDADVDG+HI+TL++TFFF  +  LI  G+LYI +PPLY   +G
Sbjct: 479 D-FDADKVRYKKIIIMTDADVDGSHIQTLIMTFFFNHLRELIERGYLYIAQPPLYRYKKG 537

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K  +Y+KD++ L ++LI Q ++            + K +L+  + +A     L+      
Sbjct: 538 KIEKYLKDDKELNEFLIEQGINSIEI------EGVGKLELKELLKNAAYYKILLDKLTKR 591

Query: 608 HD-KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            +    I   +  G  +          L   L      I  K +  ++   N     +  
Sbjct: 592 FNIPEIIRFLIEDGNID---------KLEEYLKKFGFNIISKHDNHYYIQTNRGLEEITI 642

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
             + +     +E   ++    +YK +                             LLD +
Sbjct: 643 DDKLLNHPLFIEAKKVYEKLKEYKDLVKG----------------------DYLELLDEV 680

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
               R G  +QRYKGLGEMN  QLW+TT++P+ R L++V + DA  A   F   MG EV 
Sbjct: 681 IKKARSGAHIQRYKGLGEMNPDQLWDTTMDPENRVLIQVTLEDAENAAKQFELFMGSEVG 740

Query: 787 PRREFIQENSLPS-ALDI 803
           PRRE+IQ N+     +D+
Sbjct: 741 PRREYIQANAKEVENIDV 758


>gi|149196297|ref|ZP_01873352.1| DNA gyrase subunit B [Lentisphaera araneosa HTCC2155]
 gi|149140558|gb|EDM28956.1| DNA gyrase subunit B [Lentisphaera araneosa HTCC2155]
          Length = 838

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/844 (40%), Positives = 513/844 (60%), Gaps = 47/844 (5%)

Query: 1   MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+  +N    Y ADSI ++KGL+AV+KRPSMYIGDT+ E GLHH++YEV+DN+IDE+L 
Sbjct: 1   MSEEQENQAGEYGADSISVMKGLEAVRKRPSMYIGDTN-ERGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+ + ITV L++D S TV D+GRGIP ++H+EEGI A E+++T+LHAGGKF++ SYKVSG
Sbjct: 60  GHCNNITVKLHIDNSVTVVDDGRGIPVNIHEEEGIPAVELVLTKLHAGGKFDKDSYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS W+++++ R+  ++ + F  G+ +  L   G   N TGTEV F P 
Sbjct: 120 GLHGVGVSCVNALSEWMEVKVHRDETLHFIRFERGLTETSLKTIGHT-NITGTEVIFKPD 178

Query: 179 SDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-PREITMFYKGGIEAFVSYL 236
            +IF+    + +D L  RLREL+FLN  + I+ ID+R+ +  R  T ++ GGI  FV +L
Sbjct: 179 FEIFTETLIYKWDILAKRLRELAFLNPGITINFIDERAEDGERRETFYFPGGIGEFVKHL 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +  K  +    +     +D ++ D++ +++DG+ EN+  + NNI   +GGTHL+G ++AL
Sbjct: 239 NDGKTVVT-DTVTFSTEKDGVTADVSFQYHDGFQENIYSYCNNIHTIEGGTHLAGFQTAL 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T  I SY+ K+    K++++V G D REG T+++S+K+P+P+F  QTK KL ++EVRS+V
Sbjct: 298 TASINSYM-KNDSKFKNEKNVSGTDVREGLTAIISVKVPEPQFEGQTKTKLGNNEVRSIV 356

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
            + V+   + +LEE+P  AK++V+K L A+    AA RAR L R+  VL+  +  GKL+ 
Sbjct: 357 RAIVSTSFNEFLEENPKAAKVVVEKALLANRASAAALRARQLIRKDNVLEGFADAGKLSG 416

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS ++P + E+F+VEGDSAGGSAKQGR+ E QAILPLRGK++NVE+AR DK+ ++ EIG+
Sbjct: 417 CSSKNPDECEIFIVEGDSAGGSAKQGRNSEVQAILPLRGKLINVEKARIDKVFANTEIGS 476

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI+A+G G+G + FD+ K+RY KI+IMTDADVDG+HI TLLLTFFFRQM  LI  G++Y+
Sbjct: 477 LISAIGCGVGNE-FDVEKIRYKKIVIMTDADVDGSHIMTLLLTFFFRQMKPLIEAGYIYV 535

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY + R K  +Y+K++  L ++L+   +         +   +S  +    +    +
Sbjct: 536 AQPPLYKVVRRKREEYIKNDAMLNNFLLELGVDGITLENKLAGNTLSPRETNEILALIKR 595

Query: 597 IDKLIKDFYPNHD--KTFIEQAVISGVF--------------------NCESDQEINVSL 634
              + K    +    +T+++  +  G                      + E   +I    
Sbjct: 596 TLAVGKGLENHGVTLETYLQHVLEDGSLPIARVGVREDDGTYSIYFPTSQEELAQIIDDA 655

Query: 635 ASKLANRLNFIAEKSEKS------WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
             +L   + F+   +E                +   +       E   L   ++     +
Sbjct: 656 TERLKPVITFVDTDAESETIEGEEVLEGELVEEEAEEVGIHPSIEVNELHEKTLIEEIRE 715

Query: 689 YKRIFSNRIEENYLTILSLIC-------NGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                S  ++       +L           +   I     L + I   G +G+ +QRYKG
Sbjct: 716 KLETVSLTLQHFLEPEDALAEPIFNLTDGNNDTPIFTLIQLFEAIKDEGSQGLKLQRYKG 775

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS--LPS 799
           LGEMNA QLWETT++P  R LL+V + DA +A+ +FS LMGD VEPRR FI++ S  L  
Sbjct: 776 LGEMNADQLWETTMDPTRRDLLQVTMEDAVEAERMFSLLMGDVVEPRRHFIEKYSTTLK- 834

Query: 800 ALDI 803
            LD+
Sbjct: 835 ELDV 838


>gi|237751289|ref|ZP_04581769.1| DNA gyrase subunit B [Helicobacter bilis ATCC 43879]
 gi|229372655|gb|EEO23046.1| DNA gyrase subunit B [Helicobacter bilis ATCC 43879]
          Length = 775

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/801 (40%), Positives = 477/801 (59%), Gaps = 28/801 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
                 Y AD+I++LKGL+AV+KRP MYIGDT+  +GLHHMIYEV+DN+IDE++ G+   
Sbjct: 2   ENTTKEYLADNIKVLKGLEAVRKRPGMYIGDTN-TNGLHHMIYEVVDNSIDEAMAGFCKN 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +TL   GS  + D+GRGIP D+H  E + AA V++T LHAGGKF++ +YKVSGGLHGV
Sbjct: 61  IKITLTDKGSAIIEDDGRGIPVDMHPTENMPAATVVLTVLHAGGKFDKDTYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L + I +   IY+  F  GI    L + G      GT + F P  +I  
Sbjct: 121 GVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETK-KHGTTIEFFPDPEIME 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + +F+ + L  R +E+++L   ++I   D+R           +GG+  F+  +++     
Sbjct: 180 ITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHF--EGGLSQFIEDINKKTLIT 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                    +  +  I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R I +Y
Sbjct: 238 QILSFEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAILNY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E +  +++    V+GDD REG  ++++ K+ DP+F  QTK KL SS V+ +V+    + 
Sbjct: 298 IEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQKLTYEK 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +S + EE+P +AK+I++KVL A+  R+AA+RARDLTR+   + +++LPGK ADC  +DP 
Sbjct: 358 ISKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQSKDPS 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R D +L S+EI  +ITA G 
Sbjct: 418 ECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMITAFGC 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG D F+  KLRYHKIIIMTDADVDG+HI+TLL+TFF+R    L+  G++YI +PPLY 
Sbjct: 478 GIG-DEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYFKPLVQGGYIYIAQPPLYK 536

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
             R K   Y+KD+++L D+LI   +             I  N+L   +       +L+ D
Sbjct: 537 YKRNKKEVYLKDDKALSDFLIENGIEHFNF------KGIGHNELLQILKIIAHYRQLVND 590

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
               +   ++ + ++    +    + ++ ++ S L         K        I+   I 
Sbjct: 591 LERRYSVQYVLRYLVENELDTHDLESLSKNIESYL-------LSKQYNVLKKHIDEVSIT 643

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +         +  +  +       K  +    +I E  L  L       K  ITG    L
Sbjct: 644 LNAQTNLGITEIKITRNLFHDISFKECKRIYQKITERELEFL-----EGKDIITG----L 694

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           + I    RK   + RYKGLGEMN  +LWETT++P  R+L++VKI D   AD++F+  MGD
Sbjct: 695 EEIEEATRKKGDISRYKGLGEMNKEELWETTMSPQNRTLVQVKIEDDEMADEMFNIFMGD 754

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           EVEPRR++IQ+++     LD+
Sbjct: 755 EVEPRRQYIQKHARDVKNLDV 775


>gi|315453774|ref|YP_004074044.1| DNA gyrase subunit B [Helicobacter felis ATCC 49179]
 gi|315132826|emb|CBY83454.1| DNA gyrase subunit B [Helicobacter felis ATCC 49179]
          Length = 766

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/798 (42%), Positives = 485/798 (60%), Gaps = 37/798 (4%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY  D I++LKGL+AV+KRP MYIGDT G +GLHHM+YEV+DNA+DES+ G+ D I VTL
Sbjct: 3   SYMGDKIKVLKGLEAVRKRPGMYIGDT-GVNGLHHMVYEVVDNAVDESMAGFCDHIKVTL 61

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           +  GSC V DNGRGIP D+H  EGI AA V++T LHAGGKF+Q+SYKVSGGLHGVGVSVV
Sbjct: 62  SQYGSCIVEDNGRGIPVDIHPTEGIPAATVVLTILHAGGKFDQESYKVSGGLHGVGVSVV 121

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L + I REG IY   F  GI   PL V G+     GT + F P  +I  V  F+
Sbjct: 122 NALSIKLIMTIYREGQIYRQEFEKGIPTTPLEVVGTTK-KRGTTIEFFPDPEIMEVVQFD 180

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
              L+ R +E+++LN+  +I+L     P     +  Y+ G++ F+    +   PL+   I
Sbjct: 181 SGVLKRRFQEMAYLNN--KITLEFHDQPAQVHESYHYQDGLKQFIIDTQK--TPLISEII 236

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                 + + +++A+ +N+ Y E    F NNI   +GGTH SG +  L++ I SY+++S 
Sbjct: 237 AFSAQVEGMEVEVALAYNESYEEQTFSFVNNIRTIEGGTHESGFKMGLSKAILSYIQESN 296

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
              ++  SV+ +D REG ++++S+K+ DP+F  QTK KL SS VR ++   V + ++ + 
Sbjct: 297 --SREGSSVVQEDVREGLSAIISLKLLDPQFEGQTKAKLGSSFVRPIIAKLVYEKVAKYF 354

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK IV+KVL A+  R+AA++AR++TR+K  L + +LPGKLADC  +DPK+ EL+
Sbjct: 355 EENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLPGKLADCQSKDPKECELY 414

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K+L S+EI  +ITA G G+G++
Sbjct: 415 LVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKSEEIKNMITAFGCGVGKE 474

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F++ KLRYHKIIIMTDADVDG+HI+TLL+TFFFR +  LI  G +YI +PPLY   + K
Sbjct: 475 -FNLEKLRYHKIIIMTDADVDGSHIQTLLMTFFFRHLKPLIEYGHVYIAQPPLYRFKKKK 533

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             +Y++DE  L  +LI   +             + +NDL + +        ++++     
Sbjct: 534 IERYLRDERELNHFLIEHGIDSMEI------EGMGRNDLLDLLKTLSAYRSILQELEKRP 587

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK--SEKSWHGSINNSDILVKR 666
               + + ++       S   +   L + L      I  K   E+  H  +  +  LV+ 
Sbjct: 588 ILMEVLRYLVEHDIEGLSFPTLAERLEALLQGLQYRILTKQVFEQGAHFFVQTALGLVEI 647

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               ++E  + +   +    +K        I+   L + +L               L  +
Sbjct: 648 ---NIEETLLQDALFL---EAKALFARIAEIDTEVLGMDAL-------------DFLHKV 688

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
               + G  +QRYKGLGEMN  QLWETT+  + R+LLRV + D ++AD+ F+ LMGDEVE
Sbjct: 689 EQSAKTGAYIQRYKGLGEMNPDQLWETTMALENRALLRVALEDEAKADEAFNLLMGDEVE 748

Query: 787 PRREFIQENSLPSA-LDI 803
           PRRE+I  ++     LD+
Sbjct: 749 PRREYIHTHAKDVKHLDV 766


>gi|322378945|ref|ZP_08053359.1| DNA gyrase subunit B [Helicobacter suis HS1]
 gi|321148621|gb|EFX43107.1| DNA gyrase subunit B [Helicobacter suis HS1]
          Length = 767

 Score =  747 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/796 (42%), Positives = 492/796 (61%), Gaps = 34/796 (4%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y  D I++LKGL+ V+KRP MYIGDT+  +GLHHM+YEV+DN+IDES+ G+   I +TL+
Sbjct: 4   YMGDKIKVLKGLEGVRKRPGMYIGDTN-INGLHHMVYEVVDNSIDESMAGFCTDIKITLS 62

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
             GSC V DNGRGIP D+H  EGI+AA V++T LHAGGKF+++SYKVSGGLHGVGVSVVN
Sbjct: 63  QYGSCIVEDNGRGIPVDIHPTEGIAAATVVLTTLHAGGKFDKESYKVSGGLHGVGVSVVN 122

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L + IKREG IY   F  GI  + L  TG+     GT + F P   I  V  F+ 
Sbjct: 123 ALSKRLLMTIKREGKIYTQEFAKGIPLDTLKQTGTTK-QRGTCIEFFPDESIMEVVVFDA 181

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
             L+ R +E+++LN +V I+  D+ +    E    Y+ G++ F+   D +K PL+   I 
Sbjct: 182 AILKKRFKEMAYLNHNVTITFCDQPN--NIEEVYHYEEGLKQFIL--DTNKAPLLSDVIT 237

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
             G  +++ +++A+ +N+GY E +  F NNI   +GGTH +G R  L+R I +Y++++  
Sbjct: 238 FNGQAEDMEVEVALAYNEGYSEQMFSFVNNIRTPEGGTHETGFRMGLSRAILNYIQQNAS 297

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           +++ +  VI +D +EG  +V+S K+ +P+F  QTK KL SS VR +V   V + ++ + E
Sbjct: 298 AREKEAGVIQEDIKEGLVAVVSTKILEPQFEGQTKAKLGSSFVRPIVAKLVYEKMAQFFE 357

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK I++K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DPK+SE++L
Sbjct: 358 ENPSVAKAIMQKALLAAKGREAAKKARELTRKKDNLSVGTLPGKLADCQSKDPKESEIYL 417

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE++   K+L S+EI  +ITA G G+G++ 
Sbjct: 418 VEGDSAGGSAKQGRDRTYQAILPLRGKILNVEKSHLSKILKSEEIKNMITAFGCGVGEE- 476

Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549
           F++ KLRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI NG +YI +PPLY   + K 
Sbjct: 477 FNLEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLIANGHVYIAQPPLYRFKKKKI 536

Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN-H 608
            +Y+KDE+ L  +LI   +             I ++DL   +        ++K+      
Sbjct: 537 EKYLKDEKELNHFLIEHGIDSAQI------EGIGRSDLLALLKTLSAYRFVLKELEKRPL 590

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIA 668
               +   V S        +     LA+K+ + L  I        H  ++ S     +  
Sbjct: 591 MPEVLRYLVESP------QRLSLEVLAAKIHDLLEKIH--CHVLSHQILDQSLHFFVQTK 642

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            G+ E  +++ +          +    +I+E  L+ L++               L++I  
Sbjct: 643 TGLVE-LLIDEALFSDPLFLEAKALVQKIQEFDLSCLNM----------DALDFLESIEE 691

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788
             ++G  +QRYKGLGEMN  QLWETT++   R+LLRV + D   A + F+ LMGDEVEPR
Sbjct: 692 RAKQGAYIQRYKGLGEMNPEQLWETTMSAANRNLLRVSLEDEQSAHEAFNLLMGDEVEPR 751

Query: 789 REFIQENSLPSA-LDI 803
           R++IQ ++     LDI
Sbjct: 752 RDYIQAHARDVKHLDI 767


>gi|171913703|ref|ZP_02929173.1| DNA gyrase subunit B [Verrucomicrobium spinosum DSM 4136]
          Length = 864

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/849 (41%), Positives = 494/849 (58%), Gaps = 54/849 (6%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N +Y A+ I  L+GL+AV+KRP MYIGD D E GLHH ++EVLDN+IDE L G+   ITV
Sbjct: 18  NQAYGAEQIDKLEGLEAVRKRPGMYIGDPD-ERGLHHCVFEVLDNSIDEHLAGFCKTITV 76

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ DGSC+V D+GRGIP ++H + G+   E+++T LHAGGKF Q +YK SGGLHGVG  
Sbjct: 77  TIHSDGSCSVEDDGRGIPVEIHPKFGVPTVELVLTNLHAGGKFGQGAYKYSGGLHGVGAK 136

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFS- 183
            VNALS W K  + R G  + +SF  G    PL V G       TGT++TF P ++IF+ 
Sbjct: 137 CVNALSEWFKAEVYRGGKAHAISFSRGKTTEPLTVVGDLEDPTRTGTKITFFPDAEIFTA 196

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F ++ L +RLREL+FLN  V I L D+R    RE T FYK G+  FV  L  +K  +
Sbjct: 197 TTEFRFELLVNRLRELAFLNPGVIIVLKDERPEPIREETFFYKFGVVEFVVQLGDNKVLV 256

Query: 244 MQSPIRIQGSRD--------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
              P+ ++G R            +D  +++ND Y E +LCF N+IP  DGGTHLSG RSA
Sbjct: 257 HDKPVVLRGQRFIEVEDKQDICFVDCVLQYNDSYSEQMLCFANSIPNPDGGTHLSGFRSA 316

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR I  + + +   K+    + G+DCREG   +LS+K+P+PRF+SQTK KLV+ EV   
Sbjct: 317 MTRAINQFAKANKMVKESDPPITGEDCREGMVCILSVKLPNPRFNSQTKGKLVNGEVEGA 376

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V S V +G+  +L+E+P  AK I+   +  +     A R    T RK V+    LPGKLA
Sbjct: 377 VSSVVYEGMQQFLDENPGVAKRIID-KILTAARAREAARKARETVRKSVMTGGGLPGKLA 435

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+ERDP KSELF+VEGDSAGGSAK GR R  QAILPLRGK++NVE+AR DK L ++EI 
Sbjct: 436 DCTERDPAKSELFIVEGDSAGGSAKVGRDRRVQAILPLRGKLINVEKARLDKALQNREIQ 495

Query: 476 TLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            +ITA+GTGIG    + SF + K RYHKIIIMTDADVDG+HIRTLLLTFF RQMP L+  
Sbjct: 496 AMITAIGTGIGDGADEGSFRLEKARYHKIIIMTDADVDGSHIRTLLLTFFCRQMPELVRR 555

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS---KGVISKNDLR 588
           G++YI +PPLY + R K  +YV+D+  L   LI+    E             ++ K+ L+
Sbjct: 556 GYIYIAQPPLYLVKRRKREEYVQDDGELNHILIDLGAEEVRLRVLTDSGENPMMEKDKLK 615

Query: 589 NFID---DALKIDKLIKDFYPNHDKTFIEQAVISGVFNC-----ESDQEINVSLASKLAN 640
             +D      + +++I+    + +K    +   +G             E  VS       
Sbjct: 616 PILDLLSRLSRFNEVIRRNGGDFEKYIQCRDPETGAMPAFLVRIRDGNEEMVSYFLGDRE 675

Query: 641 RLNFIAEKSEKSWHGSINNSDILV--------------------KRIARGVQEQFVLEGS 680
              F    ++    G   +   +V                     R AR V+        
Sbjct: 676 LSEFAHANADLGLFGRSIDPPPVVAGTEAAEPPVAEKPAVKDGRTRRARLVEIHEANSIK 735

Query: 681 SIFSFGSKY---KRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737
            +    S+       +S++ +  +  +     N     +     +L+ + +IGR+G+ ++
Sbjct: 736 KLLGQLSELGLSLDHYSSQDKPLFELVEGEGDNARVHPVFSVPGILEGVMNIGRRGLEIR 795

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEMNA +L+ TT+   TR LLRV++   +  +AD +F+ LMGD VEPR+ FI+EN
Sbjct: 796 RFKGLGEMNAKELYTTTMEQKTRKLLRVRLNEENEIEADRIFTILMGDIVEPRKIFIEEN 855

Query: 796 SLPS-ALDI 803
           +L    LD+
Sbjct: 856 ALNVRNLDV 864


>gi|196232356|ref|ZP_03131210.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
 gi|196223724|gb|EDY18240.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
          Length = 853

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/841 (40%), Positives = 480/841 (57%), Gaps = 46/841 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y AD +  LKGL+AV+K+P MYIG TD E  LHH + EVLDN++DE L GY   I V
Sbjct: 15  KTQYTADDLSSLKGLEAVRKKPGMYIGGTD-ERALHHCVSEVLDNSVDEFLAGYCTHIDV 73

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ DGS ++ DNGRGIP D++KEEGI   E+++TRLH+GGK+ Q +Y+ SGG HGVG  
Sbjct: 74  TIHSDGSISIRDNGRGIPVDINKEEGIPGVELVLTRLHSGGKYGQGNYEYSGGTHGVGAK 133

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--DTGTEVTFLPSSDIFSV 184
            VNA+S W K+ + R+G I+ MSF  G     L V     N   TGT +TF P  +IF  
Sbjct: 134 CVNAVSEWFKVEVTRDGKIHAMSFERGTTKQQLHVIAEVKNNRHTGTLITFKPDPEIFHE 193

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F  + +  RL +L+++N+ +  + +D+R+   R + + +  G+E FV+ L  +K  +
Sbjct: 194 TTEFKSERIITRLNDLAYINAPLSFTFLDERTEGARPVQIVHPKGVEDFVARLSENKTLV 253

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI ++G+RD I ++  + +ND Y+E +LC+TN +P  DGGTH SG R +LTR I  Y
Sbjct: 254 HPKPILVKGTRDRIIVEFGLHYNDSYNEQLLCYTNAVPNPDGGTHSSGFRGSLTRAINQY 313

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            + +   K    ++ G+D  EG  +V+S+K PDPRF SQTK KL+S EV S+V S   +G
Sbjct: 314 AKNNSLLKDKDPAITGNDVLEGVAAVVSVKHPDPRFESQTKVKLISPEVESIVGSISYEG 373

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L    +++P   K I+ K L A      A R    T RKG +    LPGKLADCSERDP+
Sbjct: 374 LMLHFDQNPGVGKKIIDKCLMA-ARAREAARKARETVRKGAMTGGGLPGKLADCSERDPE 432

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +EL++VEGDSAGGSAKQGR R  QAILP++GKI+NVE+AR DK+L + EI TLITA+GT
Sbjct: 433 LTELYVVEGDSAGGSAKQGRDRRFQAILPIKGKIINVEKARLDKVLQNTEIQTLITAIGT 492

Query: 484 GIG----------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           GIG          + +FDI +LRY +IIIMTDADVDG+HIRTLLLTFF+RQMP L+  G 
Sbjct: 493 GIGMATSEKEKENEGTFDIKRLRYGRIIIMTDADVDGSHIRTLLLTFFYRQMPELVRGGH 552

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK---NDLRNF 590
           +YI  PPLY I R K  +YV+D+ +L   LI     +          + +     +L + 
Sbjct: 553 VYIACPPLYLIKRKKREEYVEDDAALNRILITLGSEDVKLKNLADGKIFTATQLKELLDL 612

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES---------------DQEINVSLA 635
           ++   K  + I+    + ++    +   +G F                   D+       
Sbjct: 613 LERLAKFSEAIRRHGGDFEQYLARRDSTTGAFPAYMVKVRDGNNESVEYFLDEAAVRGYH 672

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG-------VQEQFVLEGSSIFSFGSK 688
               +   F     E    G       +  R           + E    +          
Sbjct: 673 EDNRDLGLFEDPAPENPVEGEALAEKPVASRKKEEGPVRRARLIELHESDAVQKLVADIA 732

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISMQRYKGLGE 744
            K +      ++   I  LI       IT        +   +  IG+KG+S+QR+KGLGE
Sbjct: 733 RKGLMIEHFADSDHPIFELIEGEGDKAITHSLFTVPEIHSKVIEIGKKGLSIQRFKGLGE 792

Query: 745 MNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           MN  QL+ETT++P+ R + RV++   +A +AD +F+ LMGD VEPRR+FI++N+L + LD
Sbjct: 793 MNPKQLYETTMDPNKRKMWRVELNEDNAVEADRMFTILMGDVVEPRRQFIEDNALNARLD 852

Query: 803 I 803
           +
Sbjct: 853 V 853


>gi|269799050|gb|ACZ43803.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 726

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/734 (49%), Positives = 482/734 (65%), Gaps = 17/734 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN----NYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 57  CTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F PS +
Sbjct: 117 HGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K
Sbjct: 176 TFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 235 TPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRT 294

Query: 300 ITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
           + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE 
Sbjct: 295 LNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC 
Sbjct: 355 AMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLI
Sbjct: 415 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+G GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +
Sbjct: 475 TAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQ 534

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + +GK  +Y+KD+  L  YL   +L             I    L + ++   KI+
Sbjct: 535 PPLYKMKKGKQERYIKDDADLTQYLTTIALDGAGLFVNSDAPAIRGAALEDLVNGYRKIE 594

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSEK 651
            L+     +  K F  + +   V   E   D+    + A +L   L           +  
Sbjct: 595 SLMGKLNRSLPKVFTNEMIYQSVLTAEMLTDEASTTAWAEELVATLTAKEVTGTLYSARV 654

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           +          ++     G+   +        S            I         +    
Sbjct: 655 AQDEESQLFYPVLSIRQHGLDTSYDFTPGFFNSKEYATLTGLG--IANLLEEGAYIKRGE 712

Query: 712 DKIKITGPCSLLDT 725
              ++T     L+ 
Sbjct: 713 KSREVTNFVEALNW 726


>gi|330952329|gb|EGH52589.1| DNA gyrase subunit B [Pseudomonas syringae Cit 7]
          Length = 727

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/733 (49%), Positives = 490/733 (66%), Gaps = 13/733 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS++
Sbjct: 118 HGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 235 TPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K 
Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653
           +K     + +   E  V       E   D E   +  +    RL    +     K+    
Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
               N     V+ I+ G+            S   K       +I         +     K
Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714

Query: 714 IKITGPCSLLDTI 726
             +T     L  +
Sbjct: 715 KPVTEFKEALAWL 727


>gi|261838253|gb|ACX98019.1| DNA gyrase subunit B [Helicobacter pylori 51]
          Length = 773

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/799 (42%), Positives = 485/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K + A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKAILAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSIALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++  +  LD+
Sbjct: 755 EPRRAFIQAHAKDAKQLDV 773


>gi|87308271|ref|ZP_01090412.1| DNA gyrase subunit B [Blastopirellula marina DSM 3645]
 gi|87288828|gb|EAQ80721.1| DNA gyrase subunit B [Blastopirellula marina DSM 3645]
          Length = 858

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/844 (38%), Positives = 479/844 (56%), Gaps = 51/844 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    NS Y A  ++ L  L+ V++RPSMYIGD  G  G HH++YEV+DN+IDE++  +
Sbjct: 25  MAK--ANSEYGAGDLEHLSDLEHVRERPSMYIGD-RGARGFHHLVYEVVDNSIDEAMAEF 81

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKE------EGISAAEVIMTRLHAGGKFNQKSY 114
           A  ITVT++ D S TV D+GRGIP +LH +        +S  E +MT L  GGKF++ +Y
Sbjct: 82  ASAITVTIHNDNSVTVEDDGRGIPVELHPQLTEQVGRDVSTLEGVMTVLKFGGKFSKGAY 141

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + SGGLHGVGV+VVN LS W ++ + R+G+I++  +  G+   P+   G+     GT+ +
Sbjct: 142 QTSGGLHGVGVTVVNFLSEWCEVEVHRDGSIWQQEYQRGVPQGPIRKGGATK-KRGTKTS 200

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P S IF+V  FNYDTL  RL+EL+FLN  V+I   D+R+ E       Y+ GI  +V 
Sbjct: 201 FKPDSQIFNVSKFNYDTLYKRLQELAFLNRGVKIIFKDERNDEGG--EFQYERGIVEYVE 258

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+R    L    I ++G  + +  D+A+++++ Y EN+  F NNI   +GGTH+SG ++
Sbjct: 259 HLNRASTALHSEVISLEGISEGVGFDIALQYSEEYTENLHSFVNNINTHEGGTHVSGFKT 318

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + +Y +K         ++ GDD REG T V+S+++P+P+F  QTK KL +SEV  
Sbjct: 319 AMTRTLNNYAKKESLL--KDLTLAGDDFREGLTCVISLRVPNPQFEGQTKTKLGNSEVEG 376

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-RKGVLDIASLPGK 413
           +V S V + L  +LEEHP   K+I++K + AS  R+AAR+AR++ R RK  L    LPGK
Sbjct: 377 IVNSAVGEFLGKYLEEHPKIGKLIIRKAILASQAREAARKAREMMRSRKNALGGGGLPGK 436

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC  RD +  EL+LVEGDSAGGSA+ GR RE QAILPLRGKI+N  ++R DK+L+++E
Sbjct: 437 LRDCISRDMEICELYLVEGDSAGGSAEGGRLREFQAILPLRGKIINAYKSREDKVLANEE 496

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           + ++I A+G GIG++     K RY+K+IIMTDADVDG+HIRTLLL FF+RQM SL+  G 
Sbjct: 497 VQSMIQAIGAGIGEEQDIH-KRRYNKVIIMTDADVDGSHIRTLLLAFFYRQMYSLVSGGH 555

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +Y+ +PPL+ +TR K + Y++ EE ++  L+   L  +     +S   I  +++      
Sbjct: 556 VYVAQPPLFRVTRKKQITYIQTEEEMKTRLLENGL-RDASFVDESGREIIGDEMERLCRS 614

Query: 594 ALKIDKLIKDFYPNH---------------------------------DKTFIEQAVISG 620
              +++ I                                         K   E  V  G
Sbjct: 615 LAALEEAIIALERRGISLKIHAVRQDPVTAKLPVFHLVFGITEEWFTTRKELDEYLVEKG 674

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           +       E   + A   A      AE +         +   +             ++  
Sbjct: 675 LVTESQSDEPAEAPADGEAAVSGEEAETNSTDKVEENGHPAEIPHITELHEVRTINIQLD 734

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
            +   G   + +          +   L     +  I     L+  I + G KG  + R+K
Sbjct: 735 ELNGMGFDIQSLIPQERTGLQESRYKLRRGESESGIEDLRGLVSAIRAFGEKGQQITRFK 794

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA +L ETTL+P  R+LL+V + D S ADD+F  LMGD+VEPRREFI++++L   
Sbjct: 795 GLGEMNAEELRETTLDPANRTLLKVTMEDLSAADDMFRVLMGDKVEPRREFIEKHALDVR 854

Query: 800 ALDI 803
            LD+
Sbjct: 855 NLDV 858


>gi|261839663|gb|ACX99428.1| DNA gyrase subunit B [Helicobacter pylori 52]
          Length = 773

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLATKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSIALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|288561864|gb|ADC53568.1| DNA gyrase subunit beta [Pseudomonas syringae pv. syringae]
          Length = 722

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/725 (49%), Positives = 479/725 (66%), Gaps = 10/725 (1%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIGDTD  SGLHHM++EV+DN+IDE+L G+ D I++ ++ D S TV DNGRGIP D+
Sbjct: 1   PGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDV 60

Query: 88  HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
           HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E
Sbjct: 61  HKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWE 120

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
            ++++G+   P+ + G + + TGT++ F PS++ F    F++D L  R+RELSFLNS V 
Sbjct: 121 QTYVHGVPQEPMKIVGES-DSTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVG 179

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           I L D+RS +       Y+GG+ AFV YL+ +K P+ +         D I +++A++WND
Sbjct: 180 IVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQWND 237

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            ++EN+LC TNNIPQ+DGGTHL G RSALTR + +Y+E+   +KK K +  GDD REG T
Sbjct: 238 SFNENLLCSTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 297

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK +V K++DA+ 
Sbjct: 298 AIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAAR 357

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  
Sbjct: 358 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRT 417

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG++ ++I+KLRYH IIIMTDAD
Sbjct: 418 QAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDAD 477

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDG+HIRTLLLTFFFRQ+P LI  G++YI +PPLY + +GK  QY+KD+E++E+Y+   +
Sbjct: 478 VDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSA 537

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES- 626
           L +      +S   IS   L   ++D   + K +K     + +   E  V       E  
Sbjct: 538 LEDASLHLSESAPGISGTALEKLVNDFRMVMKTLKRLSRLYPQELTEHFVYLPPITLEQL 597

Query: 627 -DQEINVSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
            D E   +  +    RL    +     K+        N     V+ I+ G+         
Sbjct: 598 SDHEGMQAWLALFDARLRTGEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRD 657

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
              S   K       +I         +     K  +      L  + +   K  ++QRYK
Sbjct: 658 FFGSNDYKTVTALGAQISTLLEEGAYVQRGERKKPVNEFKEALAWLMAESTKRHTIQRYK 717

Query: 741 GLGEM 745
           GLGEM
Sbjct: 718 GLGEM 722


>gi|109947377|ref|YP_664605.1| DNA gyrase subunit B [Helicobacter acinonychis str. Sheeba]
 gi|109714598|emb|CAJ99606.1| DNA gyrase subunit B [Helicobacter acinonychis str. Sheeba]
          Length = 773

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QDYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDAINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP  +H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVGIHPTEKIPACTVVLTMLHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--DTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G   N  ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGRIYRQEFEKGIPISELEIIGKTKNAKESGTTIEFFPDGSVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F  + LQ R +E+++LN  ++I+  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQANILQKRFKEMAYLNDGLKIAFKEEKT--QLQETYFYEDGLKQFVKDSTKKELLTSV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +      + SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDGETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +++S+KM +P F  QTK KL SS VR++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLVAIVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  KVL A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKVLLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +         + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGVNSANI------EGIGKNDLMNLLKVVRHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S          S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALTLDMKVLEKSILEKLESLNYQVLRSFV-----TEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|217032914|ref|ZP_03438390.1| hypothetical protein HPB128_10g6 [Helicobacter pylori B128]
 gi|298736181|ref|YP_003728707.1| DNA gyrase, B subunit [Helicobacter pylori B8]
 gi|216945363|gb|EEC24033.1| hypothetical protein HPB128_10g6 [Helicobacter pylori B128]
 gi|298355371|emb|CBI66243.1| DNA gyrase, B subunit [Helicobacter pylori B8]
          Length = 773

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/799 (41%), Positives = 482/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSTKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETCTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SF+I KLRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFEIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +         + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVVRHYRYTLLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   + + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEVLRFLIETKDALSFDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHV 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAIFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|320103192|ref|YP_004178783.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Isosphaera pallida ATCC 43644]
 gi|319750474|gb|ADV62234.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Isosphaera pallida ATCC 43644]
          Length = 889

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/870 (38%), Positives = 504/870 (57%), Gaps = 75/870 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y    I+ L+G++A++ RP+MYI DT  + GLHH+++EV+DN+IDE++ GY   I
Sbjct: 24  VNSEDYSEAHIRDLEGIEAIRLRPAMYINDTSSQ-GLHHLVFEVVDNSIDEAMAGYCKHI 82

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ DGS +++D+GRGIP     +   SA E+++T+ H+G KF+  SYKVSGGLHGVG
Sbjct: 83  HVRIHPDGSVSITDDGRGIPVGRIAKHDKSALEIVLTKPHSGAKFDHNSYKVSGGLHGVG 142

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           ++VVNALS WL+  ++REG I+   +  G+  + +   G A   TGT + FLP + IF  
Sbjct: 143 LTVVNALSEWLEAEVRREGKIWRQEYRQGVAQSDVKAVGPAT-TTGTRIHFLPDATIFPS 201

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR-SPEPREITMFYKGGIEAFVSYLDRHKKPL 243
            + ++DTL+ RLREL+FLN  V I L D+R   EP++ T     G++ FV YL+R + P+
Sbjct: 202 IELDHDTLEKRLRELAFLNKDVTIRLTDERGEGEPKDQTFPTNTGLKGFVEYLNRAQTPI 261

Query: 244 MQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                        ++S+++A+++ND   ENV+ + NNI   DGGTHL+G R ALT+ +  
Sbjct: 262 HPVIHLEGHDEEADVSVEVALQYNDSIAENVVTYCNNISTLDGGTHLTGFRLALTKTLGQ 321

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
            V+    S K   +V G+D REG T+V+++K+ DP+F+S +K KL + EV  VV   V D
Sbjct: 322 MVKTIGSSSKKDLAVSGEDFREGLTAVIAVKVRDPQFASNSKRKLSNPEVEGVVSRIVTD 381

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT-RRKGVLDIASLPGKLADCSERD 421
            L  +LEE P  AK +V+K L A+  R+AAR+AR+L   RKGVL    LPGKL DC+ +D
Sbjct: 382 QLGRFLEETPAIAKRLVQKALLAAEAREAARKARELVRNRKGVLTGGGLPGKLMDCTSQD 441

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            + SELFLVEGDSAGG+A+ GR R  QAILPLRGKILNVERAR DK+L ++E+  +ITA+
Sbjct: 442 RESSELFLVEGDSAGGTAEGGRDRLFQAILPLRGKILNVERARLDKVLGNEEVRNIITAV 501

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG+D  D +K RY KI++M+DADVDG+HIRTLL+TFF+RQMP L+  G LY+ +PPL
Sbjct: 502 GGGIGEDE-DPSKRRYGKIVMMSDADVDGSHIRTLLMTFFYRQMPKLVAEGHLYVAQPPL 560

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD------SKGVISKNDLRNFIDDAL 595
           Y I++ K  +YV+ E  +   L++  L+     F D      +  V+S   LR  ++  +
Sbjct: 561 YMISQRKERRYVQTEAEMHRLLVDLGLAGSELEFLDPPSSPITPRVVSGERLRTLLEIVV 620

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH- 654
            +++ ++ F     K     A+     +   +    +     L  R +   E  E+ +H 
Sbjct: 621 GLEQGLRAFGKRGIKARDFLALAHPATDPAVNPLAGLLPLYHLKPRPDH-PEDVERWFHT 679

Query: 655 -------------------------------GSINNSDILVKRIARGVQEQFVLEGSSIF 683
                                           +         R    +  + + E  ++ 
Sbjct: 680 ADEWAALNEPARTAEPPPPSTTPSNSQDNAPTATETPSPPSTREHEALAPEELAEVRTLN 739

Query: 684 SFGSKYKRIFSNRIE---------ENYLTILSLICNGDK--------------------I 714
            + ++ +  F  R +         ++      +   GD                      
Sbjct: 740 KWLARLRDEFGLRADTLLDREVTGDDPPPRFIMRREGDTPTASSETEQDLSNASSPPTGY 799

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +T    L   +  +G +G+ + R+KGLGEM+A QLW+TT++P  R+LL+V++ DA+ A+
Sbjct: 800 PLTNLLQLPSLVRRLGERGLKITRFKGLGEMDADQLWDTTMDPARRTLLQVRLEDAAAAN 859

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DLF+ LMGD+VEPRR+FI++++L    LD+
Sbjct: 860 DLFTTLMGDDVEPRRDFIEKHALDVKNLDV 889


>gi|317009520|gb|ADU80100.1| DNA gyrase subunit B [Helicobacter pylori India7]
          Length = 773

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTGEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FYK G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SF+I KLRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFEIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHIYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|188527660|ref|YP_001910347.1| DNA gyrase subunit B [Helicobacter pylori Shi470]
 gi|188143900|gb|ACD48317.1| DNA gyrase subunit B [Helicobacter pylori Shi470]
          Length = 773

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F  D LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQADILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 --GNIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|225165618|ref|ZP_03727428.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224800132|gb|EEG18551.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 895

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/865 (39%), Positives = 470/865 (54%), Gaps = 67/865 (7%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++      YDA  +  LKGL+AV+K+P MYIG TD E  LHH + EVLDN++DE L G+ 
Sbjct: 33  ANQAIEGDYDASKLSQLKGLEAVRKKPGMYIGGTD-ERALHHCVSEVLDNSVDEHLAGHC 91

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V +++DGS ++ DNGRGIP D+++E G+   E+++T LH+GGK+ Q  YK SGG H
Sbjct: 92  SRIEVNIHVDGSISIRDNGRGIPVDINQESGLPGVELVLTTLHSGGKYGQGGYKFSGGTH 151

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG   VNA+S W ++ + R G ++ M F  G     L V G A   TGT +TF P  +I
Sbjct: 152 GVGAKCVNAVSEWFEVEVSRNGQVHHMKFERGKTVKKLEVIGKA-RGTGTYITFKPDPEI 210

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F     F    +  RLREL+FLNS ++I   D+R   P+  T +YK G+E FV+ L+  K
Sbjct: 211 FKETTVFQAARISQRLRELAFLNSGLEIVFTDERPATPKPETYYYKNGVEEFVTQLNTGK 270

Query: 241 KPLMQSPIRIQGSRD--------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
             L   PIRI              I +++ +++ND Y++ VLC+TN I   DGGTHLSG 
Sbjct: 271 NALHPRPIRITREVRSQIDDKPVEIHVEVVLQYNDTYNDQVLCYTNTIHNPDGGTHLSGF 330

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           RSALTR I  Y + +   K     + GDD REG  +V+SIK  DP+F SQTK KL+S EV
Sbjct: 331 RSALTRAINQYAKANNLLKDKDPQITGDDVREGLAAVISIKHSDPKFESQTKVKLLSPEV 390

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
            SVV S   +GL  + E +P   K I+      +     A R    T RKG      LPG
Sbjct: 391 ESVVGSASYEGLMMYFETNPPVIKRIID-KCLNAARAREAARKARETVRKGAFSGGGLPG 449

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCSERDP   E+++VEGDSAGGSAKQGR R  QAILPLRGK+LNVE+AR D +L + 
Sbjct: 450 KLADCSERDPSLCEIYIVEGDSAGGSAKQGRDRRYQAILPLRGKVLNVEKARIDHVLGNA 509

Query: 473 EIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           EI T+ITA GTGIG+       F+I K RYHKIIIMTDADVDG+HIRTLLLTF +RQM  
Sbjct: 510 EIRTMITAFGTGIGEGDDSVGGFNIAKTRYHKIIIMTDADVDGSHIRTLLLTFLYRQMRG 569

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L   G++YI +PPLY I R K  QYV +++ +   L+     + I          ++  +
Sbjct: 570 LFEAGYVYIAQPPLYKIKRKKREQYVDNDDQMNRILLELGSEDVILTRLRDNLNFNEEQI 629

Query: 588 RNFIDDALKIDKLIKDFYP----------------NHDKTFIEQAVISGVFNCESDQEIN 631
              +++   ++KL                           +I +       N E   +  
Sbjct: 630 DQIVENLSALEKLGGSVTRYGASLSDYLDQHDKTTQELPRYIARIREGNQENHEFLHDEA 689

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSINNSDI--------------------------LVK 665
              A +  + L   +  S     GSI                                  
Sbjct: 690 ARYAFEQKHDLIDASASSTLQPDGSITTDLPPATPALDVGRSGEAAASLPPPPPTPVANA 749

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-------CNGDKIKITG 718
           R A+ +    + E + +        RI  +  +         +        +  +  +  
Sbjct: 750 RTAKRITIHEIFESTEMSKLIRAIARIGLDINQFGTTENARYVLTENAGQKSEVQTPLHS 809

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           P  ++  I + GRKG+S+QRYKGLGEMN  QL+ETT++P  R LL+V + DA++AD LF+
Sbjct: 810 PLDIVAQIRANGRKGLSIQRYKGLGEMNPKQLFETTMDPAKRRLLKVNVADAAKADALFT 869

Query: 779 RLMGDEVEPRREFIQENSLPSA-LD 802
            LMGDEV PRR+FI++N+L    LD
Sbjct: 870 LLMGDEVPPRRQFIEDNALNVQFLD 894


>gi|15645128|ref|NP_207298.1| DNA gyrase subunit B [Helicobacter pylori 26695]
 gi|2501294|sp|P55992|GYRB_HELPY RecName: Full=DNA gyrase subunit B
 gi|2313611|gb|AAD07566.1| DNA gyrase, sub B (gyrB) [Helicobacter pylori 26695]
          Length = 773

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/799 (42%), Positives = 482/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y+ 
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIG 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHT 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|108562902|ref|YP_627218.1| DNA gyrase subunit B [Helicobacter pylori HPAG1]
 gi|107836675|gb|ABF84544.1| DNA gyrase subunit B [Helicobacter pylori HPAG1]
          Length = 773

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTSEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FYK G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|308184282|ref|YP_003928415.1| DNA gyrase subunit B [Helicobacter pylori SJM180]
 gi|308060202|gb|ADO02098.1| DNA gyrase subunit B [Helicobacter pylori SJM180]
          Length = 773

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 VAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYTLLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHT 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|15611520|ref|NP_223171.1| DNA gyrase subunit B [Helicobacter pylori J99]
 gi|6647533|sp|Q9ZLX3|GYRB_HELPJ RecName: Full=DNA gyrase subunit B
 gi|4154989|gb|AAD06031.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
          Length = 773

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FYK G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G ++I + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYTLLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   + + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEVLRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKDVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENYAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|307637178|gb|ADN79628.1| DNA gyrase subunit B [Helicobacter pylori 908]
 gi|325995767|gb|ADZ51172.1| DNA gyrase subunit B [Helicobacter pylori 2018]
 gi|325997363|gb|ADZ49571.1| DNA gyrase subunit B [Helicobacter pylori 2017]
          Length = 773

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/799 (42%), Positives = 482/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FYK G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSTKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+ FDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QEGFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYTLLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   + + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEVLRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAIFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|308063700|gb|ADO05587.1| DNA gyrase subunit B [Helicobacter pylori Sat464]
          Length = 773

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSVLEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|308182657|ref|YP_003926784.1| DNA gyrase subunit B [Helicobacter pylori PeCan4]
 gi|308064842|gb|ADO06734.1| DNA gyrase subunit B [Helicobacter pylori PeCan4]
          Length = 773

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/799 (42%), Positives = 485/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FYK G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A     ++ +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYVLLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|317181823|dbj|BAJ59607.1| DNA gyrase subunit B [Helicobacter pylori F57]
          Length = 773

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|317177660|dbj|BAJ55449.1| DNA gyrase subunit B [Helicobacter pylori F16]
          Length = 773

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/799 (42%), Positives = 485/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN+ ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNNGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++++ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVSLAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHV 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|208434424|ref|YP_002266090.1| DNA gyrase subunit B [Helicobacter pylori G27]
 gi|208432353|gb|ACI27224.1| DNA gyrase subunit B [Helicobacter pylori G27]
          Length = 773

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/799 (42%), Positives = 481/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FYK G++ FV      +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAEKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G ++I + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S          S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRSFV-----TEESLHLHV 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|308061830|gb|ADO03718.1| DNA gyrase subunit B [Helicobacter pylori Cuz20]
          Length = 773

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/799 (42%), Positives = 482/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 --GNIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHV 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|254779478|ref|YP_003057583.1| DNA gyrase subunit B [Helicobacter pylori B38]
 gi|254001389|emb|CAX29378.1| DNA gyrase subunit B (type II topoisomerase) [Helicobacter pylori
           B38]
          Length = 773

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/799 (42%), Positives = 482/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDAINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++      T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLHETYFYEDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|317013919|gb|ADU81355.1| DNA gyrase subunit B [Helicobacter pylori Gambia94/24]
          Length = 773

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTSEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FYK G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G ++I + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYHYTLLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   + + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEVLRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FTTEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L      +   I      L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL------ENKDILSF---LEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAIFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|317012319|gb|ADU82927.1| DNA gyrase subunit B [Helicobacter pylori Lithuania75]
          Length = 773

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSTKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FYK G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYTDDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS VR++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI KLRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVACHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHT 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL ++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLFKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|297379696|gb|ADI34583.1| DNA gyrase, B subunit [Helicobacter pylori v225d]
          Length = 775

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/801 (42%), Positives = 486/801 (60%), Gaps = 32/801 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVIS--GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
             ++   I + +I      + + D +I      +    LN+   +S      +   S  L
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMDMKILEKSILEKLEGLNYQILRS-----FATEESLHL 644

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
             +  +G+ E F L+ +       +       ++ E  L  L         +     + L
Sbjct: 645 HAQTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFL 694

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           + + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGD
Sbjct: 695 EEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGD 754

Query: 784 EVEPRREFIQENSLPSA-LDI 803
           EVEPRR FIQ ++     LD+
Sbjct: 755 EVEPRRAFIQAHAKDVKQLDV 775


>gi|332673706|gb|AEE70523.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Helicobacter pylori
           83]
          Length = 773

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/799 (42%), Positives = 485/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHETGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS VR++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIKDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|317010750|gb|ADU84497.1| DNA gyrase subunit B [Helicobacter pylori SouthAfrica7]
          Length = 773

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/799 (41%), Positives = 481/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QDYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP  +H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVGIHPTEKIPACTVVLTMLHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--DTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G   N  ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKNAKESGTTIEFFPDGSVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++I+  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKIAFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        ++++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTAVEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +++S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 HN--IKTKESRPISEDIKEGLVAIVSLKMSEPLFEGQTKSKLGSSYARTLVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+R+AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASRKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL + +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVNI------EGIGKNDLMSLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S          S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQVLRSFV-----TEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ +  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMDYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|317180279|dbj|BAJ58065.1| DNA gyrase subunit B [Helicobacter pylori F32]
          Length = 773

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKLLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHV 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|210134704|ref|YP_002301143.1| DNA gyrase subunit B [Helicobacter pylori P12]
 gi|210132672|gb|ACJ07663.1| DNA gyrase subunit B [Helicobacter pylori P12]
          Length = 773

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/799 (42%), Positives = 482/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTERIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSTKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPI 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKNMDEETRTSIEVALAYTDDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +         + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVVRHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHT 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENYAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|240142256|ref|YP_002966766.1| DNA gyrase, subunit B [Methylobacterium extorquens AM1]
 gi|240012200|gb|ACS43425.1| DNA gyrase, subunit B [Methylobacterium extorquens AM1]
          Length = 816

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/820 (44%), Positives = 520/820 (63%), Gaps = 23/820 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  +    +YDA SIQ+L+GL+AV+KRP MYIGDT+  +G HHM++EV+DN IDE L G+
Sbjct: 1   MPAHQDPGAYDASSIQVLEGLEAVRKRPGMYIGDTNDGTGFHHMVWEVVDNGIDECLAGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           AD +TVTLN DGS TV DNGRGIP D H +  G SAAE+IMT LHAGGKF+Q SYKVSGG
Sbjct: 61  ADRVTVTLNADGSVTVVDNGRGIPVDPHPKYPGKSAAEIIMTVLHAGGKFDQNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS- 178
           LHGVGVSVVNALSS L+L I R G  + M+F +G    P+   G A    GT VTF PS 
Sbjct: 121 LHGVGVSVVNALSSLLELTIWRGGREHYMAFEHGEPAGPIRDVGDAKGRRGTSVTFTPSL 180

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
                V +F+   ++ RLREL+FLNS V+I   D+R  +   + M+Y+GG+  +V Y+DR
Sbjct: 181 RTFTGVVEFSAAVIERRLRELAFLNSGVRIVFHDRRVKDVDPVEMYYEGGVGEYVGYIDR 240

Query: 239 --HKKPLMQSPIRIQGSR----------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
              +  ++  PI ++  R            + I++A++WND   E+VL FTNNIPQ DGG
Sbjct: 241 TAGRDRVIARPIVVRTERSVEVEGNPGPIPVGIEVALQWNDSTTESVLPFTNNIPQTDGG 300

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH+ G ++ALTR   +YV+++    K K  + GDD REG T+++S+K+PDP+F+SQTK K
Sbjct: 301 THVQGFKTALTRSFMAYVDRN--PLKTKTGLSGDDLREGLTAIVSVKLPDPKFASQTKAK 358

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVS+EV   V+S V + L+ WL+E+P +A+ ++ K ++A+  R+AA+RAR++ RRK VLD
Sbjct: 359 LVSNEVSGPVQSAVGEALATWLDENPADARKVIDKAVEAAAAREAAKRAREMVRRKTVLD 418

Query: 407 I-ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
              SLPGKLADC ERDP KSE+ +VEGDSAGGSAKQGR  E QA+LPLRGKILN E AR 
Sbjct: 419 DITSLPGKLADCRERDPSKSEILIVEGDSAGGSAKQGRDSEFQAVLPLRGKILNTETARL 478

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           D+++ +  +GTL+ ALG GIG+ S D +K+RYH+IIIMTDADVDGAHIRTLLL FFFR M
Sbjct: 479 DRIMKNAAVGTLVKALGCGIGKGSHDPDKVRYHRIIIMTDADVDGAHIRTLLLAFFFRHM 538

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P LI+ GF+Y  +PPLY I +     +++D+ +L+  L+            D   V+S  
Sbjct: 539 PELINRGFVYKAEPPLYSIEKKGRKTFLRDDVALDRELLRLGSEGIAFRRADGA-VLSGV 597

Query: 586 DLRNFIDDALKIDKLIKDFYPN-HDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRL 642
           DL    + A    +L      +   +   ++ V+SG  +     D E  + L ++++ R+
Sbjct: 598 DLAVAAEQAKADARLFAAIDADVGLRPLADELVVSGWLDPVLWQDDEAMLRLGAEISARM 657

Query: 643 NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
             +   S   W        + ++   +GV ++ ++  +      +        +I + Y 
Sbjct: 658 PSMMPAS--RWTSEAEAEGLRMRWTVKGVGQERLVPRALCEGAVAHTLVRRRQQIAQVYG 715

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
              +++    +I + GP SL D +  +G KG+++ RYKGLGEM A QL ETTL+P  RS+
Sbjct: 716 AGAAILGPAGEIPVPGPSSLFDHVRELGGKGLTIGRYKGLGEMTAQQLSETTLDPTARSI 775

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +++++ DA  A     +LMG + EPR+  ++       +D
Sbjct: 776 VQIRVEDAEAARAKVDQLMGSKSEPRKHLLETRGHLVEVD 815


>gi|317179129|dbj|BAJ56917.1| DNA gyrase subunit B [Helicobacter pylori F30]
          Length = 773

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/799 (42%), Positives = 485/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            SY + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QSYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMVGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +        SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS VR++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSIALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDTLSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|315586815|gb|ADU41196.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Helicobacter pylori
           35A]
          Length = 773

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+E  IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKESQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +      + SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D +I      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|217034369|ref|ZP_03439784.1| hypothetical protein HP9810_889g14 [Helicobacter pylori 98-10]
 gi|216943164|gb|EEC22634.1| hypothetical protein HP9810_889g14 [Helicobacter pylori 98-10]
          Length = 773

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+E  IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKESQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G++ FV    + +     
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
              +      + SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I  Y++
Sbjct: 239 ISFKSMDEETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTHETGFKMGLSKAILQYID 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  +   I +D +EG  +V+S+KM +P F  QTK KL SS  R++V   V D + 
Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + +LPGKLADC  +DP +S
Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA G GI
Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  LI  G +YI + PLY   
Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK+  Y+KD  +L+ +LI   ++            I KNDL N +  A      + +  
Sbjct: 536 KGKTEIYLKDSIALDHFLIEHGINSVDI------EGIGKNDLMNLLKVACHYRYALLELE 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             ++   I + +I        D ++      +    LN+   +S      +   S  L  
Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           +  +G+ E F L+ +       +       ++ E  L  L         +     + L+ 
Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + +  +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D  + D +FS  MGDEV
Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754

Query: 786 EPRREFIQENSLPSA-LDI 803
           EPRR FIQ ++     LD+
Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773


>gi|296120721|ref|YP_003628499.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
           [Planctomyces limnophilus DSM 3776]
 gi|296013061|gb|ADG66300.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Planctomyces limnophilus DSM 3776]
          Length = 824

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/837 (37%), Positives = 483/837 (57%), Gaps = 47/837 (5%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD         S Y   +I+ L+G++ ++ RP MYIGD  G  GLHH+++EV+DN+IDE
Sbjct: 1   MSDAAATPAPSTSEYSEKNIRALEGIEGIRLRPDMYIGD-RGSRGLHHLVFEVVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFN-QKS 113
           ++ GYA  ++V +N+DGS ++ D+GRGIP     ++G  SA E+++T++HAGGKF+ Q  
Sbjct: 60  AVAGYATWVSVKINVDGSVSIIDDGRGIPVGAMADQGGKSALEIVLTKIHAGGKFDRQGG 119

Query: 114 YKV-SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           YK  +GGLHGVG++ VNALS WL   I+REG+++ M F  G     L   G A + TGT+
Sbjct: 120 YKTGTGGLHGVGITAVNALSEWLSAEIRREGHVWTMDFARGTRTTELTKLGLA-DVTGTK 178

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           +TF P S IF+   F +D L  RL+EL+FLN+ + I L D+R+ +       Y  G+  F
Sbjct: 179 ITFKPDSTIFTESKFVFDVLAKRLQELAFLNAGIHIRLADERTEQS--EEFHYPDGLREF 236

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+R +  L    + I+G  + + + + ++ NDG+ E V  F NNI   +GGTHLSG 
Sbjct: 237 VKHLNRTETTLYADILSIEGEIEGVKVMVCLQHNDGFSETVRAFANNIYNMEGGTHLSGF 296

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           RSALTR I +Y ++            GDD REG   V+++++P P+F  QTK KL + EV
Sbjct: 297 RSALTRAINNYGKREN--LFKDIDTTGDDFREGLVCVIAVRVPHPQFEGQTKTKLSNGEV 354

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
             +V S V +GL+ + EE+P  AK I +K   A+  R+AAR++R++ RRKG L    LP 
Sbjct: 355 EGIVNSIVFEGLTKFFEENPGIAKKICQKGAMAAEAREAARKSREMVRRKGALTSGGLPE 414

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DC  R+   +EL+LVEGDSAGGSA  GR    QAILPLRGKILNVE+A+  K+L + 
Sbjct: 415 KLRDCRSRELDITELYLVEGDSAGGSADTGRDSNTQAILPLRGKILNVEKAQLVKILDNA 474

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI  L  A+G     +  D+ K RY KII+MTDADVDG+HIRTLLLTF FR M +L+ +G
Sbjct: 475 EIANLFKAVGIPPMAELEDVTKRRYGKIILMTDADVDGSHIRTLLLTFLFRHMRALVEHG 534

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI +PPLY + +    +YV+  + +   LI   ++    +  +         LR+ ++
Sbjct: 535 CIYIAQPPLYRVIQKNKTRYVQTHDMMMTELIELGMNGTRLVDPNDGFTFEGESLRHVVN 594

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNC-----------------ESDQEINVSLA 635
              ++ + ++            + +++  F                   E  +    S A
Sbjct: 595 LMRRLAEPVELLERRGISLKSLEPLLNASFKLPQYRVTITRTDHWFHTREDVEAFLQSEA 654

Query: 636 SKLANRLNF-------IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
           ++  + LN        +A  + K   G+   +D+   R    V        S +   G +
Sbjct: 655 ARRGSELNMANSDAQPVAADTAKPVEGAAQLTDLHEIRTLNDV-------LSDLRGIGIQ 707

Query: 689 YKRIFSNRIEEN-YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747
           ++ +    + +   +    +      +K+     LL+ + ++G  G+++ R+KGLGEM+ 
Sbjct: 708 FRHLIPAGMRDGELVFPFRIEQEKSVLKLQSLRELLEKLRALGEDGLTVTRFKGLGEMDP 767

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +LWET++ P  R+LL+V++ DA+ AD++F  LMGD+VEPRREFI++++L    LDI
Sbjct: 768 EELWETSMQPTARTLLQVRMDDAAAADEMFRVLMGDQVEPRREFIEKHALDVKDLDI 824


>gi|283778833|ref|YP_003369588.1| DNA gyrase, B subunit [Pirellula staleyi DSM 6068]
 gi|283437286|gb|ADB15728.1| DNA gyrase, B subunit [Pirellula staleyi DSM 6068]
          Length = 830

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/838 (38%), Positives = 484/838 (57%), Gaps = 43/838 (5%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D +        Y+A+SI+ L  L+ V+ RP+MYIGD     GLHH++YEV+DN+IDE+
Sbjct: 1   MADELTPENVEKDYNAESIKHLSDLEHVRLRPAMYIGDITA-RGLHHLVYEVVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE----EG--ISAAEVIMTRLHAGGKFN 110
           + G+A  ++V +N DGS TV D+GRGIP + H++    EG  +S  E +MT+L  GGKF+
Sbjct: 60  MAGHAKQVSVIVNTDGSVTVEDDGRGIPVERHEQLSASEGRDVSTLEGVMTKLKFGGKFD 119

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           + SYK SGGLHGVGV+VVN LS W ++++ R G IY+ S+  G    P+   GS  + TG
Sbjct: 120 KDSYKTSGGLHGVGVTVVNFLSQWAEVQVCRGGKIYQQSYETGAPTGPVREIGST-DRTG 178

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+ TF P   IF    + YD L  RL+EL+FLNS V+I   D+R+ E  E    Y+ GI 
Sbjct: 179 TKTTFKPDGTIFQTTKYQYDILHKRLQELAFLNSGVRIKFKDERNGEGAE--FCYERGII 236

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +L+R    +    I ++G  D +  ++A++++  Y EN+  + NNI   +GGTH+S
Sbjct: 237 EFIEHLNRASDVIHSDVIYLRGEVDTVGFEIALQYSAEYTENLHSYVNNIHTVEGGTHVS 296

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y +K         +  GDD REG T+V+S+++  P+F  QTK KL + 
Sbjct: 297 GFRSALTRTLNAYGKKEG--LFKDITPTGDDFREGLTAVISVRVAHPQFEGQTKTKLGNG 354

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           EV  +V   VN+ L+ +LEE+P  AKIIV K VL A     A +    L  RK  L    
Sbjct: 355 EVDGIVAGAVNEFLAKFLEENPKTAKIIVRKGVLAAEAREAARKAKEVLRSRKNALGGGG 414

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DC  ++ ++ EL+LVEGDSAGGSA+ GR R+ QAILPLRGKI+N  ++R DK+L
Sbjct: 415 LPGKLRDCISKEMERCELYLVEGDSAGGSAEGGRLRDFQAILPLRGKIINAYKSREDKVL 474

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           +++E+ ++I A+GTGIG +  D+ K RY+KIIIMTDADVDG+HIRTLLL FF+RQM SL+
Sbjct: 475 ANEEVQSMIQAIGTGIGAEI-DLTKRRYNKIIIMTDADVDGSHIRTLLLCFFYRQMYSLV 533

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            NG +Y+ +PPL+ +   K   YV+ +E +   L+++ + +       +      +D++ 
Sbjct: 534 ANGHVYVAQPPLFRVRSKKETYYVQTDEEMRSQLLSRGIGDTELD-LQNGTKFVGDDMKK 592

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQ---AVISGVFNCESDQEINVSLASKLANRLNFIA 646
                  ++  +           +      V +G          +     + A  +N   
Sbjct: 593 IAGILASMEDALVALERRGISLKLHATRADVNTGALPVVHLFIGSRDYWLRSAEEINAKV 652

Query: 647 EKSEKSWHGSINNSDILVK----------------RIARGVQEQFVLEGSSIFSFGSKYK 690
           ++ E      I   + +V+                  A  V+   V   ++  S    Y 
Sbjct: 653 QELESELKKKIIFGEKVVEAAPGATDAPPAVDENAIRAYSVELHEVKTINAGLSQLKPYS 712

Query: 691 RIFSNRI----EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMN 746
              +  I             L    ++I +    +L+ +I  +G+KG+S+ R+KGLGEMN
Sbjct: 713 IDLAALIPQERTGTDEPRYILRRGENEIPLKELRTLVASIREMGQKGMSVTRFKGLGEMN 772

Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           A +L +TTL+P  R+L++V + DA  ADD+F  LMG++VEPRR+FI+ ++L    LD+
Sbjct: 773 AEELRDTTLDPKNRTLVQVSMRDAGAADDMFRVLMGEKVEPRRQFIETHALEVRNLDV 830


>gi|269799052|gb|ACZ43804.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 700

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/703 (50%), Positives = 475/703 (67%), Gaps = 15/703 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN----NYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 57  CTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F PS +
Sbjct: 117 HGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K
Sbjct: 176 TFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNK 234

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 235 TPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRT 294

Query: 300 ITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
           + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE 
Sbjct: 295 LNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC 
Sbjct: 355 AMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLI
Sbjct: 415 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+G GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +
Sbjct: 475 TAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQ 534

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + +GK  +Y+KD+  L  YL   +L             I    L + ++   KI+
Sbjct: 535 PPLYKMKKGKQERYIKDDADLTQYLTTIALDGAGLFVNSDAPAIRGAALEDLVNGYRKIE 594

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSEK 651
            L+     +  K F  + +   V   E   D+    + A +L   L           +  
Sbjct: 595 SLMGKLNRSLPKVFTNEMIYQSVLTAEMLTDEASTTAWAEELVATLTAKEVTGTLYSARV 654

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
           +          ++     G+   +        S          
Sbjct: 655 AQDEESQLFYPVLSIRQHGLDTSYDFTPGFFNSKEYATLTGLG 697


>gi|149174461|ref|ZP_01853087.1| DNA gyrase subunit B [Planctomyces maris DSM 8797]
 gi|148846571|gb|EDL60908.1| DNA gyrase subunit B [Planctomyces maris DSM 8797]
          Length = 831

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/838 (39%), Positives = 497/838 (59%), Gaps = 42/838 (5%)

Query: 1   MSDNIQNSS------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MSD  ++ +      YD  +I+ L+G++ ++ RP+MYIGDT    GLHH++YEV+DN+ID
Sbjct: 1   MSDQEESQTELKKTGYDESNIRALEGVEGIRTRPAMYIGDT-TLRGLHHLVYEVVDNSID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFN-QK 112
           E +  YA II V +N DGS T SD+GRGIP  +  +     A EV++T +HAGGKF+ + 
Sbjct: 60  ECVNNYASIINVKINADGSVTCSDDGRGIPIGIMPDMNNRPALEVVLTEIHAGGKFDREG 119

Query: 113 SYKV-SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            YK  +GGLHGVG++ VNALS WL+  ++REG+++ M F  G+L  PL   G   + +GT
Sbjct: 120 GYKTGTGGLHGVGITAVNALSEWLEAEVRREGHVWTMDFHQGLLKTPLKKLGKT-DKSGT 178

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           ++TF P   IF    F YDTL  RL+EL+FLN+ V+I + D+R+ +       Y+ G+  
Sbjct: 179 KITFKPDGTIFPDTKFVYDTLTKRLQELAFLNAGVRIRINDERTGQS--DEFHYEEGLVE 236

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+R +  L +  I IQG  + + +D++++ NDG  ENV CF NNI   +GGTH SG
Sbjct: 237 FVRHLNRTETVLYEEIIHIQGELEGVQVDISVQHNDGSTENVRCFANNIFNIEGGTHFSG 296

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR I +Y +K+        +  GDD REG T+V+++++PDP+F  QTK KL +SE
Sbjct: 297 FRGALTRSINAYGKKAN--LFKDFTPSGDDFREGLTAVITVRVPDPQFEGQTKTKLGNSE 354

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V  +V++ VN+ L+ + EE+P  AK I  K L A+  R+AA++AR++ RRKG L    LP
Sbjct: 355 VEGIVQTVVNEKLTKFFEENPGVAKKISLKGLLAAEAREAAKKAREMVRRKGALTTGGLP 414

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
            KL DC  R+   +EL+LVEGDSAGGSA  GR    QAILPLRGKILNVE+A+  K+L +
Sbjct: 415 EKLRDCRSRELDITELYLVEGDSAGGSADTGRDSNIQAILPLRGKILNVEKAQLVKVLDN 474

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            EI  +  A+G   G    D+ K RY KII+MTDADVDG+HIRTLLLTFFFR M  L++N
Sbjct: 475 AEIANIFKAVGVPPGAAFDDVTKRRYGKIILMTDADVDGSHIRTLLLTFFFRHMRELVNN 534

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +Y+ +PPLY +T+GK ++YV+ ++ + + L+  +LS+      +   +     L   +
Sbjct: 535 GCVYVAQPPLYRVTQGKKIRYVQTQDEMMNELVELALSDSNLQH-EDGTIFEGEMLEKLV 593

Query: 592 DDALKIDKLIKDFYPNHDK---TFIEQAVISGVFNCES------------DQEINVSLAS 636
           D    +++ +              +  A   G+                  +E+   L  
Sbjct: 594 DLVSDLEEPLGTLDRRGIDLKFIALNFATEDGLLPQYRIFLGKQQFWFTSQEEMASFLKE 653

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVKRIAR-GVQEQFVLEGSSIFSFGSKYKRIFSN 695
           + A R + +    +     +  +S+      A+ G  +   L      +   +  + +  
Sbjct: 654 EEAKRGDELQIADDNGAAETSEDSEEDEDEFAKAGALQVTDLHEIRTINDLLQKLKGYGI 713

Query: 696 RIEENYLT---------ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMN 746
            +++ Y              +    + +K++    LL ++  IG KG+ + R+KGLGEMN
Sbjct: 714 HLKDFYSPGNRNGEPIYPFCINSGSNAVKLSNLRQLLPSLRDIGEKGLKLTRFKGLGEMN 773

Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + +LW+T+++P+ R LL+V + DA+ AD++F  LMGD VEPRREFI++++L    LD+
Sbjct: 774 SEELWDTSMDPEKRVLLQVGMQDAAAADEIFRVLMGDVVEPRREFIEKHALDVKNLDV 831


>gi|269799054|gb|ACZ43805.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 656

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/646 (54%), Positives = 465/646 (71%), Gaps = 6/646 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+   +
Sbjct: 1   MSENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDV 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGVG
Sbjct: 61  VVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F PS + F+ 
Sbjct: 121 VSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHETFTN 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K P+ 
Sbjct: 180 TLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTPIN 238

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + +Y
Sbjct: 239 KDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNY 298

Query: 304 VEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           +EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + +
Sbjct: 299 MEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP
Sbjct: 359 KLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDP 418

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G
Sbjct: 419 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMG 478

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPLY
Sbjct: 479 CGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + +GK  +Y+KD+  L  YL   +L             I    L + ++   KI+ L+ 
Sbjct: 539 KMKKGKQERYIKDDADLTQYLTTIALDGAGLFVNSDAPAIRGAALEDLVNGYRKIESLMG 598

Query: 603 DFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA 646
               +  K F  + +   V   E   D+    + A +L   L    
Sbjct: 599 KLNRSLPKVFTNEMIYQSVLTAEMLTDEASTTAWAEELVATLTAKE 644


>gi|325108906|ref|YP_004269974.1| DNA gyrase subunit B [Planctomyces brasiliensis DSM 5305]
 gi|324969174|gb|ADY59952.1| DNA gyrase subunit B [Planctomyces brasiliensis DSM 5305]
          Length = 826

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/832 (37%), Positives = 481/832 (57%), Gaps = 35/832 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +N    SYD   I+ L+G++ ++ RP+MYIG TD   GLHH+++E+ DN +DE +   
Sbjct: 1   MDENKPQGSYDHTKIRALEGIEGIRLRPAMYIGGTDSV-GLHHLVFELTDNVLDEYVNNN 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHK-EEGISAAEVIMTRLHAGGKFN-QKSYKV-S 117
           A ++TV +N DGS +V+D+GRGIP    + +E  SA EV+ T++HAGGKF+ +  Y   +
Sbjct: 60  AAMMTVKINADGSVSVTDDGRGIPVGEMEGQENKSALEVVFTKIHAGGKFDREGGYATGT 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG++ VNA S WL+  ++REG+++ M F  G + + L   G     TGT+VTF+P
Sbjct: 120 GGLHGVGITAVNACSEWLEAEVRREGHVWTMEFSKGAVTSGLTKLG-TTEQTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IF    F+Y+ L+ RL++ +FLN+ ++I L+D+RS +      FY+ G+  FV +L+
Sbjct: 179 DPTIFPDTTFSYEVLRKRLQDAAFLNAGIRIRLVDERSGQT--DDFFYEDGLVEFVKHLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R +  L    IRI G  D   +++AM++NDGY EN+ C+ N I   +GG+HLSG R ALT
Sbjct: 237 RTETALHPEVIRINGQSDETVVEIAMQYNDGYSENIRCYANGIYNPEGGSHLSGFRGALT 296

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y +K          + G+D REG  +V+++++P+P+F SQTK KL ++EV   V 
Sbjct: 297 RTLNNYGKKEN--LFKDVQLSGEDFREGLAAVITVRIPNPQFESQTKIKLTNAEVDGAVA 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V++ L+ ++EE+P  AK I++K + A+  R+AAR+ R++ RRKG L    LP KL DC
Sbjct: 355 SIVSEQLNKYMEENPQLAKKILQKGILAAEAREAARKQREMVRRKGALTTGGLPEKLRDC 414

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
             R+   +E++ VEGDSAGGSA  GR    QAILPLRGKILNVE+A+  K+L + EI  +
Sbjct: 415 RSRELDITEIYFVEGDSAGGSADTGRDSNTQAILPLRGKILNVEKAQLVKVLDNAEISAM 474

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             A+G   G +  DI K RY KII+MTDADVDG+HIRTLLLTF FR M  L+  G +Y+ 
Sbjct: 475 FKAIGIPPGAELEDIRKRRYGKIILMTDADVDGSHIRTLLLTFLFRHMRPLVQAGCVYVA 534

Query: 538 KPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           +PPLY +  R K  +YV+  E +   LI+ +L+           V   ++    +D   +
Sbjct: 535 QPPLYRVTQRNKKSRYVQTHEKMMSELIDLALAAASLHCKADGAVFEGDNFGRLVDLLHE 594

Query: 597 IDKLIKDFYPNHD--KTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEKSEK- 651
           + + ++         +   +  ++           I           +   F++E++E+ 
Sbjct: 595 LSEPLETLERRGVTLRYLQQNDLLQDGNLPRYQVFIGKEPHWFFDKKDMEQFLSEETERR 654

Query: 652 ------------SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
                         +G+   SD   +     +    V + + I      Y     + +  
Sbjct: 655 GTEFEVAHEQQMEKNGNGEESDQASRPTLYMIDMHEVRKINDILKRLKDYGISMGDLVPA 714

Query: 700 NYLT-----ILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQRYKGLGEMNASQLWE 752
                       +     +I ++   +LL  +  +G   I  ++ R+KGLGEM+A +LW 
Sbjct: 715 GLKDGEAVFPFVVQTEKKEIPLSSLRNLLQILRKVGEDSIQGTITRFKGLGEMDAEELWL 774

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           TT++P+ RSLL+V + DA+ AD++F  LMGD VEPRREFI++++L    LD+
Sbjct: 775 TTMDPEARSLLQVTMEDAAAADEIFRILMGDHVEPRREFIEKHALDVKELDV 826


>gi|32475718|ref|NP_868712.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1]
 gi|32446261|emb|CAD76089.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1]
          Length = 897

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/829 (37%), Positives = 477/829 (57%), Gaps = 42/829 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            NS Y    +  L  L+ V++RP MYIGDT    GLHH++YEV+DN+IDE++ G+A  ++
Sbjct: 80  ANSEYTDKDLLHLSDLEHVRERPGMYIGDT-TVRGLHHLVYEVVDNSIDEAMAGFAKSVS 138

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHK------EEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           V ++ DGS TV D+GRG+P   H       +  +S  E +MT L  GGKF + +Y+ SGG
Sbjct: 139 VIVHTDGSVTVEDDGRGVPVTRHDQLSEELDREVSTLEGVMTVLKFGGKFEKGAYQTSGG 198

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGV+VVN LS W ++ + R+G+ +   +  GI   P+   G     TGT+ TF    
Sbjct: 199 LHGVGVTVVNFLSQWAEVEVSRDGSTWTQGYERGIPTGPIQK-GRPTKKTGTKTTFKADG 257

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFSV  +N+DTLQ RL+EL+FLNS V+I  +D+R+ E  +       GI  FV +L+R 
Sbjct: 258 QIFSVTKYNFDTLQKRLQELAFLNSGVRIKFLDERNGEGGDYQY--DRGIVEFVEHLNRA 315

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
              L    I+  G +D +  D+A++++  + E V  + NNI   +GGTH+SG RSALTR 
Sbjct: 316 SDVLHGDVIQFVGEKDGVEYDMALQYSTEFTETVQSYVNNIHTIEGGTHVSGFRSALTRT 375

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y +K         +  GDD REG T+V+S+++P P+F  QTK KL + EV  ++ S 
Sbjct: 376 LNNYGKKEG--LFKNTTPTGDDFREGLTAVISVRVPHPQFEGQTKTKLGNGEVDGIITSG 433

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCS 418
           V + L+ +LEE+P  AK IV+K L A+  R+AAR+A+D  R+ K  L    LPGKL DC 
Sbjct: 434 VGEALNKYLEENPRTAKAIVRKGLLAAEAREAARKAKDQLRKRKDALGGGGLPGKLRDCI 493

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++ ++ E++LVEGDSAGGSA+ GR RE QAILPLRGKI+N  ++R DK+L+++E+ ++I
Sbjct: 494 SKNMEECEVYLVEGDSAGGSAEGGRMREYQAILPLRGKIINAYKSREDKVLANEEVQSMI 553

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+GTGIG D  D+++ RY+K+IIMTDADVDG+HIRTLLL FF+RQM  L+  G +Y+ +
Sbjct: 554 QAIGTGIGADQ-DLSRRRYNKVIIMTDADVDGSHIRTLLLCFFYRQMYQLVAAGHVYVAQ 612

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPL+ +++GK+  Y++ EE ++  L+ + L+ +     +       + +R        ++
Sbjct: 613 PPLFRVSQGKNRYYIQSEEEMKGQLLERGLN-DTRFETEDGRSAEGDSMRALCVALASME 671

Query: 599 KLIKDFYPNHDKTFIEQ--------------AVISGVFNCESDQEINVSLASKLANRLNF 644
             I           +                  I G  +    Q    +  ++    L+ 
Sbjct: 672 DAILALERRGVSLRVHSERFDPVTGKLPPFLLTILGGEHWFMKQSDVEAFLAENDATLDI 731

Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
              + E +  G         +++   V     L      + G K        +++     
Sbjct: 732 DQAEEELNVEGEEEVKSDEPEKV---VAHLAELHEVRTINSGLKDLEPLGFGLQDLIPAD 788

Query: 705 --------LSLICNGD-KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755
                     L+   D +  +     LL  + + G KG+ + R+KGLGEMNA +L ETTL
Sbjct: 789 RTGSTTARFELVRGEDMRRPLEDLRELLPEVRAAGEKGLQVTRFKGLGEMNAEELRETTL 848

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +P  R+L++V +TDA  AD++F  LMGD+VEPRREFI+ ++L    LD+
Sbjct: 849 DPANRTLVKVNLTDAGAADEMFRLLMGDKVEPRREFIETHALDVRNLDV 897


>gi|254673484|emb|CBA08885.1| DNA gyrase subunit B [Neisseria meningitidis alpha275]
          Length = 698

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/704 (46%), Positives = 452/704 (64%), Gaps = 8/704 (1%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF+  SYK+SGGLHGVGVSVVNALS W+ L I R+G  + + F+ G  + PL
Sbjct: 1   MTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPL 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G + +  GT V FL S++ F   ++++D L  R+RELSFLN+ V I L D+R  +  
Sbjct: 61  NVVGDS-DKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK-- 117

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             +    GG+  FV Y++R K PL +      G +D +S++ AM+WND Y E+V CFTNN
Sbjct: 118 HESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+ LR  +TR I +Y+E +  +KK K    GDD REG T VLS+K+PDP+F
Sbjct: 178 IPQRDGGTHLTALRQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKF 237

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVS E+  VV   ++  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++T
Sbjct: 238 SSQTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREIT 297

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKGV+D   LPGKLADC E+DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILN
Sbjct: 298 RRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILN 357

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+ARF+KML+SQE+  LITALG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLT
Sbjct: 358 VEKARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLT 417

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF+RQMP L+  G++YI +PPLY    GK  +Y+KDE   + +L+  +L +   +     
Sbjct: 418 FFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDG 475

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             I   +L +     L    +I+      D+  +   + +   +  S +  + ++A  L+
Sbjct: 476 RTIEGAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LS 534

Query: 640 NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
             L+      E+      +   I + R   G      +E   + S   +     +  ++ 
Sbjct: 535 GLLDEKEVALERIEGHEGHRF-IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKG 593

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
                  L    +        + LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  
Sbjct: 594 MVGEGAKLYKGENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAV 653

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           R LL+V+I DA  AD++F  LMGDEVEPRR FI+ N+L +  +D
Sbjct: 654 RRLLKVRIEDAIAADEVFVTLMGDEVEPRRAFIENNALIAQNID 697


>gi|327539175|gb|EGF25802.1| DNA gyrase subunit B [Rhodopirellula baltica WH47]
          Length = 869

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/829 (37%), Positives = 475/829 (57%), Gaps = 42/829 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            NS Y    +  L  L+ V++RP MYIGDT    GLHH++YEV+DN+IDE++ G+A  ++
Sbjct: 52  ANSEYTDKDLLHLSDLEHVRERPGMYIGDT-TVRGLHHLVYEVVDNSIDEAMAGFAKSVS 110

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHK------EEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           V ++ DGS TV D+GRG+P   H       +  +S  E +MT L  GGKF + +Y+ SGG
Sbjct: 111 VIVHTDGSVTVEDDGRGVPVTRHDQLSEELDREVSTLEGVMTVLKFGGKFEKGAYQTSGG 170

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGV+VVN LS W ++ + R+G+ +   +  GI   P+   G     TGT+ TF    
Sbjct: 171 LHGVGVTVVNFLSQWAEVEVSRDGSTWTQGYERGIPTGPIQK-GRPTKKTGTKTTFKADG 229

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFSV  +N+DTLQ RL+EL+FLNS V+I  +D+R+ E  +       GI  FV +L+R 
Sbjct: 230 QIFSVTKYNFDTLQKRLQELAFLNSGVRIKFLDERNGEGGDYQY--DRGIVEFVEHLNRA 287

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
              L    I+  G +D +  D+A++++  + E V  + NNI   +GGTH+SG RSALTR 
Sbjct: 288 SDVLHGDVIQFVGEKDGVEYDMALQYSTEFTETVQSYVNNIHTIEGGTHVSGFRSALTRT 347

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y +K         +  GDD REG T+V+S+++P P+F  QTK KL + EV  ++ S 
Sbjct: 348 LNNYGKKEG--LFKNTTPTGDDFREGLTAVISVRVPHPQFEGQTKTKLGNGEVDGIITSG 405

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCS 418
           V + L+ +LEE+P  AK IV+K L A+  R+AAR+A+D  R+ K  L    LPGKL DC 
Sbjct: 406 VGEALNKYLEENPRTAKAIVRKGLLAAEAREAARKAKDQLRKRKDALGGGGLPGKLRDCI 465

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++ ++ E++LVEGDSAGGSA+ GR RE QAILPLRGKI+N  ++R DK+L+++E+ ++I
Sbjct: 466 SKNMEECEVYLVEGDSAGGSAEGGRMREYQAILPLRGKIINAYKSREDKVLANEEVQSMI 525

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+GTGIG D    ++ RY+K+IIMTDADVDG+HIRTLLL FF+RQM  L+  G +Y+ +
Sbjct: 526 QAIGTGIGADQDL-SRRRYNKVIIMTDADVDGSHIRTLLLCFFYRQMYQLVAAGHVYVAQ 584

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPL+ +++GK+  Y++ EE ++  L+ + L+ +     +       + +R        ++
Sbjct: 585 PPLFRVSQGKNRYYIQSEEEMKGQLLERGLN-DTRFETEDGRSAEGDSMRALCVALASME 643

Query: 599 KLIKDFYPNHDKTFIEQ--------------AVISGVFNCESDQEINVSLASKLANRLNF 644
             I           +                  I G  +    Q    +  ++    L+ 
Sbjct: 644 DAILALERRGVSLRVHSERFDPVTGKLPPFLLTILGGEHWFMKQSDVEAFLAENDATLDI 703

Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
              + E +  G         +++   V     L      + G K        +++     
Sbjct: 704 DQAEEELNVEGEEEVKSDEPEKV---VAHLAELHEVRTINSGLKDLEPLGFGLQDLIPAD 760

Query: 705 --------LSLICNGD-KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755
                     L+   D +  +     LL  + + G KG+ + R+KGLGEMNA +L ETTL
Sbjct: 761 RTGSTTARFELVRGEDMRRPLEDLRDLLPEVRAAGEKGLQVTRFKGLGEMNAEELRETTL 820

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +P  R+L++V +TDA  AD++F  LMGD+VEPRREFI+ ++L    LD+
Sbjct: 821 DPANRTLVKVNLTDAGAADEMFRLLMGDKVEPRREFIETHALDVRNLDV 869


>gi|6018677|emb|CAB57885.1| DNA gyrase B subunit [Photobacterium damselae subsp. piscicida]
          Length = 682

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/684 (47%), Positives = 441/684 (64%), Gaps = 9/684 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+I+   + +G+   PL V G
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
              + TGT + F PSS+ F+   F Y+ L  RLRELSFLNS V I L D+R  E ++   
Sbjct: 61  DT-DRTGTTIRFWPSSETFTNTTFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI+AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ EN+ CFTNNIPQ
Sbjct: 119 MYEGGIQAFVEHLNRNKTPIHQKVFHFNVEREDGITVEVAMQWNDGFQENIYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + +Y+EK   SKK K +  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VES + + L  +L E+P +AK +  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFY 418

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           RQMP LI  G +YI +PPLY + +GK  QY+KD+E ++ +  + +L        +    +
Sbjct: 419 RQMPELIERGHIYIAQPPLYKVKKGKQEQYIKDDEDMQQFQTSLALENAALFTTEGAPAM 478

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN-VSLASKLANR 641
           +   L N +       KLI+     +    + + V                +  + +   
Sbjct: 479 AGLALENLVGQYNSTMKLIERMSRRYPTLLLNELVHQPRLTAMLSDRAQVEAWVTPVIEA 538

Query: 642 LNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
           LN           +       N+    V     GV  ++ L    I S         S  
Sbjct: 539 LNAKQSGESHYTFDIVVDSENNHFLPKVVVRTHGVDHEYPLSFELICSKEYSKLADLSEE 598

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
           +         +     K  +     +L+ +    R+G+S+QRYKGLGEMN  QLWETT++
Sbjct: 599 LNGLLDDSAYVQRGERKQPVASFKEVLEWLNKESRRGLSLQRYKGLGEMNPDQLWETTMD 658

Query: 757 PDTRSLLRVKITDASQADDLFSRL 780
           P++R ++RV I DA  AD+LF+ L
Sbjct: 659 PESRRMMRVTINDAVAADELFTTL 682


>gi|296537346|ref|ZP_06899212.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
           cervicalis ATCC 49957]
 gi|296262326|gb|EFH09085.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
           cervicalis ATCC 49957]
          Length = 705

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/698 (50%), Positives = 475/698 (68%), Gaps = 15/698 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q  +YD+ SI +L+GL+AV+KRP MYIGDTD  SGLHHM +E++DNA+DE+  GYA  
Sbjct: 13  EPQADAYDSASITVLRGLEAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGYATR 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
             V LN DGS TV+D+GRGIPTD+H EEG+SAAEV++TRLHAGGKFNQ SYKVSGGLHGV
Sbjct: 73  CDVVLNADGSVTVTDDGRGIPTDIHAEEGVSAAEVVLTRLHAGGKFNQNSYKVSGGLHGV 132

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G +VVNALS W+ + I R G  + + F +G    PL V G + +  GT VTF PS+  F+
Sbjct: 133 GAAVVNALSEWMDVTIWRNGQEHFLRFEHGDTVQPLKVVGPSDHKNGTRVTFKPSAGTFT 192

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRH 239
             ++ +  L+ RLREL+FLNS + I+L D+R        +E    ++GG+ AFV +LDR 
Sbjct: 193 RTEYEFAILEKRLRELAFLNSGLAITLRDERPVALGEPAKETAFRFEGGLVAFVEWLDRS 252

Query: 240 KKPLMQSPIRIQG-SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           K+PL +  I ++      I ++LAM WN+  HE  LCFTNNIPQ+DGGTH +G R ALTR
Sbjct: 253 KEPLFKPAISLRAKEGTGIQVELAMWWNNSPHELALCFTNNIPQRDGGTHQAGFRQALTR 312

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y E+   +KK+K  + G+D REG T+V+S+K+PDP+FSSQTK+KLVSSEV+ VV++
Sbjct: 313 VVMKYAEE--LAKKEKVELSGEDMREGLTAVISVKVPDPKFSSQTKDKLVSSEVQPVVQA 370

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D LS W E HP EA+ ++ +V+ A+  R AA+ AR+   RK  LDI++LPGKLADC 
Sbjct: 371 AVADALSHWFETHPKEARQVLDQVVLAAAARKAAQLAREKVGRKNALDISTLPGKLADCQ 430

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP K ELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVERAR DKMLSS EIGTLI
Sbjct: 431 EKDPTKCELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVERARIDKMLSSAEIGTLI 490

Query: 479 TALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           TALGTGIG     +  F  +KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP L+  G 
Sbjct: 491 TALGTGIGTGPVERGGFSADKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPELLARGH 550

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LYI +PPLY   RG+  +Y+KD+ +LED+L+ ++L      F D +       LR  ++ 
Sbjct: 551 LYIAQPPLYRAKRGQEERYLKDDRALEDFLLEKALHNATLRFADGQEA-QGAALRELVEG 609

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
             +    I+    N     +EQA I+G    ++D+ +  + A         I+  +E+ W
Sbjct: 610 LRQTAHRIRRLSANLPAEMVEQAAIAGALTADTDRALAAAPALAARLD--AISRPTERGW 667

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR 691
             + + + + + R  RGV E+  ++ + + S  +++  
Sbjct: 668 KVTADAAGLAMSRTVRGVVERHRIDPAGLRSPEARWLA 705


>gi|215272278|dbj|BAG84634.1| DNA gyrase subunit B [Psychrobacter fulvigenes]
 gi|215272280|dbj|BAG84635.1| DNA gyrase subunit B [Psychrobacter fulvigenes]
          Length = 753

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/755 (44%), Positives = 461/755 (61%), Gaps = 49/755 (6%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
            RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P 
Sbjct: 1   MRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPV 60

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  
Sbjct: 61  DIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 120

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           Y  ++ +G+ D+ +     A + TGT++ F PS D+F+   F YD L  RLRELSFLNS 
Sbjct: 121 YHQTYTDGVPDSEIQQ-MEATDKTGTQIRFYPSHDVFTGTTFEYDILAKRLRELSFLNSG 179

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V+I L D+R  +  E    +KGG+  FVSY++  K  + +         + IS+++A++W
Sbjct: 180 VRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINEVFHFTSEQAEGISVEVALQW 237

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
            D Y+E VLCFTNNIPQ+DGGTHLSG RSALTR + SY+++    KK+K    GDD REG
Sbjct: 238 TDTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRVLNSYMDRENLFKKEKVVATGDDAREG 297

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEVRS VES ++D  + +L E+P   K I  K++DA
Sbjct: 298 LTAIVSVKVPDPKFSSQTKDKLVSSEVRSAVESAMHDRFNDYLLENPSAGKAIAGKIMDA 357

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR
Sbjct: 358 ARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSR 417

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           + QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTD
Sbjct: 418 KTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTD 477

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           ADVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++
Sbjct: 478 ADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLS 537

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
            ++             I+   L   ++D  +   +            ++    +   + +
Sbjct: 538 STIDNTKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSTD 597

Query: 626 S--DQEINVSLASKLANRLN-FIAEKSEKSWHGSINNSD--------------------- 661
              D+    +    +  +L+ F ++ S +    +I+                        
Sbjct: 598 MTYDKSAMQAWKEAMQTQLDHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMSPVIEVE 657

Query: 662 -----------------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
                              +      +   ++L+ S I S         S          
Sbjct: 658 ESETTESDALSAKAQWLPRITVYVHQLAHHYLLDSSFINSGEYSKLLRLSAEWNTLLEED 717

Query: 705 LSLICNG-----DKIKITGPCSLLDTIFSIGRKGI 734
             +           I +     L   +    R+G+
Sbjct: 718 AFIRREASAGTTRDIPVRDFDYLWQQMMLDARRGL 752


>gi|144898158|emb|CAM75022.1| DNA topoisomerase II [Magnetospirillum gryphiswaldense MSR-1]
          Length = 704

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/611 (61%), Positives = 466/611 (76%), Gaps = 7/611 (1%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++    N     Y ADSI++L+GLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+
Sbjct: 1   MTEPVNPNPTAEEYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L GYA+++ V LN DGSCTV DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYKV
Sbjct: 61  LAGYANLVEVVLNADGSCTVRDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS +L LRI R G+ + M F  G    PL + G + + +GTEVTFL
Sbjct: 121 SGGLHGVGVSVVNALSEFLDLRIWRSGHEHTMRFHMGDAVAPLKLVGPS-DKSGTEVTFL 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS+ IF+  +F++ TL+HRLREL+FLNS V++ L D+R PE     + Y+GGIEAFV YL
Sbjct: 180 PSTTIFTKTEFDFATLEHRLRELAFLNSGVRLWLRDQRHPEEVVTELHYEGGIEAFVHYL 239

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR K  L   PI + G +D I++++AM W D YHE  LCFTNNIPQ+DGGTHL+G R+AL
Sbjct: 240 DRSKTALHAPPIAVAGEKDGITVEVAMEWCDSYHETQLCFTNNIPQRDGGTHLAGFRAAL 299

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I +Y  +S  +KK+K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VV
Sbjct: 300 TRTINTYANESGIAKKEKVALNGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 359

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS-LPGKLA 415
           E+ V + L+ W EEHP EA+ +V KV++A+  R+AAR AR+LTR       +S  PGKLA
Sbjct: 360 ENVVGEKLAEWFEEHPQEARKVVTKVVEAAAAREAAREARELTRHIVACWTSSPCPGKLA 419

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+ERDP  SELF+VEGDSAGGSAKQGR+R NQAILPL+GKILNVERARFDKMLSS EIG
Sbjct: 420 DCTERDPALSELFIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKMLSSAEIG 479

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLI ALGTGIG++ F+ +K RYHKIIIMTDADVDG+HIRTLLLTFFFRQMP +I  G+LY
Sbjct: 480 TLIAALGTGIGREDFNADKTRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEIIERGYLY 539

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY   RG+S  Y+KDE ++E+YLI+  L++ +        V    DLR   + A 
Sbjct: 540 IAQPPLYRAKRGQSEVYLKDERAMEEYLIDGGLNDAVLRLGSGAQV-GGADLRALAETAR 598

Query: 596 KIDKLIKDFYP 606
            +  L+    P
Sbjct: 599 TVRTLVNPLTP 609


>gi|21326652|gb|AAL30092.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris]
          Length = 621

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/622 (55%), Positives = 448/622 (72%), Gaps = 7/622 (1%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D        N +YD+  I +L+GL+AV+KRP MYIGD    +GLHHM++EV+DN++DE
Sbjct: 1   MTDEQTTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +++DGS  VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+  SYK
Sbjct: 61  ALAGHADDIVVKIHVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+ +IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y+GGI +FV +
Sbjct: 180 KPAVEIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHYEGGIRSFVEH 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R A
Sbjct: 239 LAQLKTPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRGA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 299 LTRVLSNYIEQNGIAKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLA
Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G
Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++Y
Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY + +GKS  Y+KD+ +L  YL + ++     +    +  I+   L   +    
Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASSAVEGAALIPASDEPPITGEALEKLLLLFA 598

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
              + I      +D   +   +
Sbjct: 599 GAKEAIARNAHRYDPALLTALI 620


>gi|72388577|gb|AAZ67932.1| DNA gyrase subunit B [Psychrobacter cryohalolentis K5]
          Length = 753

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/747 (44%), Positives = 459/747 (61%), Gaps = 48/747 (6%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
            RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P 
Sbjct: 2   MRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPV 61

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  
Sbjct: 62  DIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 121

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           Y  ++ +G+ D  +     A + TGT++ F PS+D+F+   F YD L  RLRELSFLNS 
Sbjct: 122 YHQTYTDGVPDGDIQQ-MEATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSG 180

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V+I L D+R  +  E    +KGG+  FVSY++  K  +      I    D IS+++A++W
Sbjct: 181 VRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGISVEVALQW 238

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
            D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + +Y+++    KK+K +  GDD REG
Sbjct: 239 TDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVAATGDDAREG 298

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +L+E+P   K+I  K++DA
Sbjct: 299 LTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDA 358

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR
Sbjct: 359 ARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSR 418

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           + QAILPL+GKILNVERARFDKMLSSQE+G LITALG GIG D ++ +K+RYHKIIIMTD
Sbjct: 419 KTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTD 478

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           ADVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++
Sbjct: 479 ADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLS 538

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
            ++             I+   L   ++D  +   +       +    ++    +   + +
Sbjct: 539 STIDNTRLHISADAPAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTD 598

Query: 626 --SDQEINVSLASKLANRLNF--------------------------------------- 644
              D++   +    L  +L                                         
Sbjct: 599 ITYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMRPVVAVE 658

Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
            ++ S+     +       +      +   ++L+ S I S         S          
Sbjct: 659 ESDSSDTEAVVAKAQWLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLDED 718

Query: 705 LSLIC----NGDKIKITGPCSLLDTIF 727
             +         K+ I     L   + 
Sbjct: 719 TFIRRDATAGTTKVPIRDFDYLWQQMM 745


>gi|72388579|gb|AAZ67933.1| DNA gyrase subunit B [Psychrobacter submarinus]
          Length = 749

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/742 (45%), Positives = 468/742 (63%), Gaps = 44/742 (5%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +VSDNGRG+P 
Sbjct: 1   KRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVSDNGRGVPV 60

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  
Sbjct: 61  DVHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 120

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           Y  ++ +G+ D+ +     A + TGT++ F PSSD+F+   F+YD L  RLRELSFLNS 
Sbjct: 121 YSQTYTDGVPDSEIQQ-MEATDKTGTQIRFYPSSDVFTGTVFDYDILAKRLRELSFLNSG 179

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V+I L D+R  +  E    +KGG+  FVSY++  K+ + +         D I++++A++W
Sbjct: 180 VRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKEGINEVFHFTSEQDDGIAVEVALQW 237

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
            D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + SY+++    KK+K +V GDD REG
Sbjct: 238 TDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAVSGDDAREG 297

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            ++++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +L E+P  AK I  K++DA
Sbjct: 298 LSAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAAKAIANKIIDA 357

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR
Sbjct: 358 ARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRSR 417

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           + QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D +D +K+RYHKIIIMTD
Sbjct: 418 KTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYDPDKVRYHKIIIMTD 477

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           ADVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++
Sbjct: 478 ADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLS 537

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
            ++        +    I+   L   ++D  +   +          T ++    +   + +
Sbjct: 538 STIDNTKLHVSEDAPAITGQALETLLNDYNQTQLIKARLQIRFPATLLDALTHTPKLSTD 597

Query: 626 S--DQEINVSLASKLANRLN------------------------------------FIAE 647
              D+       ++L  +LN                                      A+
Sbjct: 598 MTYDKSAMQEWQAQLQTQLNQFGDELSPEIELVNIHEPQPENMDAAAADLLGMTPALTAD 657

Query: 648 KSEKSWHGSINNSD---ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
           +SE +   +++        +      +   ++L+ S I S         S          
Sbjct: 658 ESEAADSDALSTKAQWLPRITVYVHQLAHHYLLDASFINSGEYSKLLRLSAEWNTLLEDS 717

Query: 705 LSLICNGDKIKITGPCSLLDTI 726
             +             + LD +
Sbjct: 718 AFIRREAGSGTTKDSDTRLDYL 739


>gi|147921290|ref|YP_684896.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured
           methanogenic archaeon RC-I]
 gi|110620292|emb|CAJ35570.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured
           methanogenic archaeon RC-I]
          Length = 635

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/644 (47%), Positives = 426/644 (66%), Gaps = 11/644 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ +   +YDA SIQ+L+GL+AV+KRPSMYIG TD   GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MSNEVPAQTYDASSIQVLEGLEAVRKRPSMYIGSTDY-RGLHHLVYEVVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N +GS TV+DNGRGIP ++H++    A E++MT LHAGGKF+ ++YKVSGGL
Sbjct: 60  CNAIDVTINPNGSVTVTDNGRGIPVEMHEKYKKPALEIVMTILHAGGKFDNRTYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L++ +KR G ++   +  G     + + G   + TGT+ TF P   
Sbjct: 120 HGVGVSVVNALSEYLEVEVKRNGKVFFQRYEKGKPVCEVKIIGET-DQTGTKTTFKPDKS 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F +D L +RLREL++LN  ++I+L D  + +  E     +GGI  F+ YL++ K
Sbjct: 179 IFETVEFQFDILANRLRELAYLNKGIRITLSDLGAQKSAEYHY--EGGINQFIEYLNQDK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L   PI  +  +D   ++++M++NDGY E +L F NNI   +GGTHLSG R+ALTR +
Sbjct: 237 TVLHPKPIYFEREKDTTKVEISMQYNDGYSEVILAFANNINTHEGGTHLSGFRAALTRTV 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K+   K     + G+D REG T+++S+K+ +P+F  QTK KL +S+V+ +VES V
Sbjct: 297 NDYARKNNMLK-GDMVLSGEDIREGLTAIISVKLTNPQFEGQTKTKLGNSDVKGIVESLV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            DGL+ +LEE+P +A+ I++K + A   R+AAR+AR+LTRRK  L+ ++LPGKLADCSE+
Sbjct: 356 GDGLNDYLEENPADARKIIEKTVQAFQAREAARKARELTRRKSALEGSTLPGKLADCSEK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K EL++VEGDSAGGSAKQGR+R  QAILPLRGKILNVE+AR +K+L S EI  LITA
Sbjct: 416 DASKCELYIVEGDSAGGSAKQGRNRLFQAILPLRGKILNVEKARLNKILESAEIRALITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTG+G+D F ++K RYHKII+MTDADVDGAHIRTLLLTFF+R M  ++  GF+YI +PP
Sbjct: 476 LGTGVGED-FVLDKARYHKIILMTDADVDGAHIRTLLLTFFYRYMQQIVEAGFVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I +GK  +YV  +  L + L     +          G ++   L +       +D  
Sbjct: 535 LYRIKKGKEEKYVYSDRELNEALEAMGRTNVSIQRYKGLGEMNPEQLWST-----TMDPA 589

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +  Y    +  IE      +   +  +     +        N 
Sbjct: 590 TRTMYQVKLEDVIEADRTFTLLMGDKVEPRREFIVKNAKFVKNL 633



 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 32/188 (17%)

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS------------------ 680
             RLN I E +E            L+  +  GV E FVL+ +                  
Sbjct: 457 KARLNKILESAEIR---------ALITALGTGVGEDFVLDKARYHKIILMTDADVDGAHI 507

Query: 681 --SIFSFGSKY-KRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISM 736
              + +F  +Y ++I            L  I  G + K +     L + + ++GR  +S+
Sbjct: 508 RTLLLTFFYRYMQQIVEAGFVYIAQPPLYRIKKGKEEKYVYSDRELNEALEAMGRTNVSI 567

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLW TT++P TR++ +VK+ D  +AD  F+ LMGD+VEPRREFI +N+
Sbjct: 568 QRYKGLGEMNPEQLWSTTMDPATRTMYQVKLEDVIEADRTFTLLMGDKVEPRREFIVKNA 627

Query: 797 LPS-ALDI 803
                LD+
Sbjct: 628 KFVKNLDV 635


>gi|6018679|emb|CAB57876.1| DNA gyrase B subunit [Photobacterium damselae subsp. damselae]
          Length = 676

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/678 (47%), Positives = 436/678 (64%), Gaps = 10/678 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  ++L I R G+I+   + +G+   PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PSS+ F+   F Y+ L  RLRELSFLNS V I L D+R  E ++    Y+GGI+
Sbjct: 60  TTIRFWPSSETFTNTTFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKQDHFMYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVEHLNRNKTPIHQKVFHFNVEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + +Y+EK   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VES + + L  +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A 
Sbjct: 239 SEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARKAREMTRRKGALDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI
Sbjct: 359 SSQEVATLITAMGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELI 418

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G +YI +PPLY + +GK  QY+KD+E ++ +  + +L        +    ++   L N
Sbjct: 419 ERGHIYIAQPPLYKVKKGKQEQYIKDDEDMQQFQTSLALENAALFTTEGAPAMAGLALEN 478

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE 647
            +       KLI+     +    + + V       E   +     +  + +   LN    
Sbjct: 479 LVGQYNSTMKLIERMSRRYPTLLLNELVHQPRLTAEMLSDRAQVEAWVTPVIEALNAKQS 538

Query: 648 -----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
                  +       N+    V     GV  ++ L    I S         S  +     
Sbjct: 539 GESHYTFDIVVDSENNHFLPKVVVRTHGVDHEYPLSFELICSKEYSKLADLSEVLNGLLD 598

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
               +     K  +     +L+ +    R+G+S+QRYKGLGEMN  QLWETT++P++R +
Sbjct: 599 DSAYVQRGERKQPVASFKEVLEWLNKESRRGLSLQRYKGLGEMNPDQLWETTMDPESRRM 658

Query: 763 LRVKITDASQADDLFSRL 780
           +RV I DA  AD+LF+ L
Sbjct: 659 MRVTINDAVAADELFTTL 676


>gi|72388561|gb|AAZ67924.1| DNA gyrase subunit B [Psychrobacter pacificensis]
          Length = 750

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/752 (44%), Positives = 462/752 (61%), Gaps = 54/752 (7%)

Query: 27  RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86
           RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D
Sbjct: 1   RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVD 60

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y
Sbjct: 61  IHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHY 120

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
             ++ +G+ D  +     A + TGT++ F PSSD+F+   F YD L  RLRELSFLNS V
Sbjct: 121 RQTYTDGVPDADIQQ-MEATDQTGTQIRFYPSSDVFTGTVFEYDILAKRLRELSFLNSGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+R  + RE    +KGG+  FVSY++  K  + +         D IS+++A++W 
Sbjct: 180 RIVLTDERIDKRRE--FEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGISVEVALQWT 237

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D Y+E VLCFTNNIPQKDGGTHLSG RSALTR + SY+++    KK+K +  GDD REG 
Sbjct: 238 DTYNEKVLCFTNNIPQKDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAATGDDAREGL 297

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +L E+P   K I  K+++A+
Sbjct: 298 TAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIANKIMEAA 357

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+
Sbjct: 358 RARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRK 417

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDA
Sbjct: 418 TQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDA 477

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ 
Sbjct: 478 DVDGSHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKVKKGRQELYLKDDEALKAYLLSS 537

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           ++             I+   L + ++D  +   +            ++    +   + + 
Sbjct: 538 TIDSTKLHVSADAPAITGQALESLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSVDM 597

Query: 627 --DQEINVSLASKLANRLN-----------------------------------FIAEKS 649
             D+         +  +L+                                    I  ++
Sbjct: 598 TYDESAMQDWQKAMQAQLDVFGSELNPEIELVNIHAPQSQDMDSAAADLLGMTPAIGTEA 657

Query: 650 EKSWHGSINNSD---------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
             +  G  ++++           V      +   ++L+ S I S         S+     
Sbjct: 658 ASTAEGEASDNEALSTKAQWLPRVTVYVHQLAHHYLLDASFINSSEYGKLLRLSSEWNTL 717

Query: 701 YLTILSLICNG-----DKIKITGPCSLLDTIF 727
             +   +           I +     L   + 
Sbjct: 718 LESDAFIRREASAGTTKDIPVRDFDYLWQQMM 749


>gi|72388585|gb|AAZ67936.1| DNA gyrase subunit B [Psychrobacter glacincola]
          Length = 756

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/726 (45%), Positives = 453/726 (62%), Gaps = 44/726 (6%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
            RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P 
Sbjct: 2   MRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPV 61

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  
Sbjct: 62  DIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 121

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           Y  ++ +G+ D  +     A + TGT++ F PS+D+F+   F YD L  RLRELSFLNS 
Sbjct: 122 YHQTYTDGVPDGDIQQ-MEATDQTGTQIRFYPSNDVFTGTVFEYDILAKRLRELSFLNSG 180

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V+I L D+R  +  E    +KGG+  FVSY++  K  +      I    D IS+++A++W
Sbjct: 181 VRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGISVEVALQW 238

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
            D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + +Y+++    KK+K    GDD REG
Sbjct: 239 TDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREG 298

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +L+E+P   K+I  K++DA
Sbjct: 299 LTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDA 358

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR
Sbjct: 359 ARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSR 418

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           + QAILPL+GKILNVERARFDKMLSSQE+G LITALG GIG D ++ +K+RYHKIIIMTD
Sbjct: 419 KTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTD 478

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           ADVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++
Sbjct: 479 ADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLS 538

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
            ++             I+   L   ++D  +   +       +    ++    +   + +
Sbjct: 539 STIDNTKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTD 598

Query: 626 S--DQEINVSLASKLANRLNFIAE---------------------------------KSE 650
              D++   +    L  +L                                      + E
Sbjct: 599 MTYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMKPVVEVE 658

Query: 651 KSWHGSIN------NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
           K                  +      +   ++L+ S I S         S+         
Sbjct: 659 KGDSSDAEAVVAKAQWLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSSEWNTLLEED 718

Query: 705 LSLICN 710
             +  +
Sbjct: 719 AFIRRD 724


>gi|72388571|gb|AAZ67929.1| DNA gyrase subunit B [Psychrobacter marincola]
          Length = 751

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/739 (45%), Positives = 465/739 (62%), Gaps = 49/739 (6%)

Query: 27  RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86
           RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +VSDNGRG+P D
Sbjct: 1   RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVSDNGRGVPVD 60

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y
Sbjct: 61  VHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHY 120

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
             ++ +G+ D+ +     A + TGT++ F PSSD+F+   F+YD L  RLRELSFLNS V
Sbjct: 121 SQTYTDGVPDSEIQQ-MEATDKTGTQIRFYPSSDVFTGTVFDYDILAKRLRELSFLNSGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+R  +  E    +KGG+  FVSY++  K+ + +         D I++++A++W 
Sbjct: 180 RIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKEGINEVFHFTSEQDDGIAVEVALQWT 237

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + SY+++    KK+K +V GDD REG 
Sbjct: 238 DTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAVSGDDAREGL 297

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           ++++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +L E+P  AK I  K++DA+
Sbjct: 298 SAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAAKAIANKIIDAA 357

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+
Sbjct: 358 RARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRSRK 417

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D +D +K+RYHKIIIMTDA
Sbjct: 418 TQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYDPDKVRYHKIIIMTDA 477

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ 
Sbjct: 478 DVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSS 537

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           ++        +    I+   L   ++D  +   +          T ++    +   + + 
Sbjct: 538 TIDNTKLHVSEDAPAITGQALETLLNDYNQTQLIKARLQIRFPATLLDALTHTPKLSTDM 597

Query: 627 --DQEINVSLASKLANRLN------------------------------------FIAEK 648
             D+       ++L  +LN                                      A++
Sbjct: 598 TYDESAMQEWQAQLQTQLNQFGDELSPEIELVNIHEPQPENMDAAAADLLGMTPALTADE 657

Query: 649 SEKSWHGSINNSD---ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
           SE +   +++        +      +   ++L+ S I S         S           
Sbjct: 658 SEAADSDALSTKAQWLPRITVYVHQLAHHYLLDASFINSGEYSKLLRLSAEWNTLLEDSG 717

Query: 706 SLICNG-----DKIKITGP 719
            +           + I   
Sbjct: 718 FIRREAGSGTTKNVPIRDF 736


>gi|282761891|gb|ADA84546.1| DNA gyrase subunit beta [Acidovorax citrulli]
          Length = 762

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/766 (43%), Positives = 467/766 (60%), Gaps = 52/766 (6%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85
           P MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT  
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 86  ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
              D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++R+
Sbjct: 61  KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119

Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           G ++ + F             NG+  +P+ VTG   +  GTEV FLP ++IF   + F+Y
Sbjct: 120 GKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHY 178

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  RLRELSFLN+ V+I L D+R+ +         GG+  FV +++  KK L  +   
Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGGVMGFVQFINASKKVLHPNAFH 236

Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             GSR            I +++AM+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR 
Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  
Sbjct: 297 IGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++TRRKGVLD   LPGKLADC E
Sbjct: 357 VAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLIT
Sbjct: 417 KDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIFTLIT 476

Query: 480 ALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           ALGTGIG+           D F+++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L
Sbjct: 477 ALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEL 536

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDL 587
           +  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +L    +    +    +    L
Sbjct: 537 VERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQARTLDGETL 596

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF--- 644
                     + +I+      D+  +         N ++ ++   S  +  A        
Sbjct: 597 STLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDAEASAVALQAKLRELTTT 656

Query: 645 -IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            +  +    +    +   + + R   G  +  ++    +           ++        
Sbjct: 657 GVPAEVAGEFDARTDKPVLRISRRHHGNIKSSIITQDFVHGADYAALAEAAHTFRGLLGE 716

Query: 704 ILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
              ++        + K++     +  +     +  S QRYKGLGEM
Sbjct: 717 GAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSRQRYKGLGEM 762


>gi|291333913|gb|ADD93593.1| DNA gyrase protein subunit B [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 740

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/732 (47%), Positives = 483/732 (65%), Gaps = 13/732 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             +SYD+ +I +LKGL+AVKKRP MYIGDTD  +GLHHMIYEVLDN+IDE+L GY + +T
Sbjct: 18  NEASYDSSNITVLKGLEAVKKRPGMYIGDTDDGTGLHHMIYEVLDNSIDEALAGYCENVT 77

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D   T+SD+GRGIP D+HK+EGISAAEVIMT+LHAGGKF+  SYKVSGGLHGVG+
Sbjct: 78  VTVHDDSKVTISDDGRGIPVDIHKDEGISAAEVIMTKLHAGGKFDDNSYKVSGGLHGVGI 137

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS +L L + R+G  Y   + +G   +  +  G   N TGT +TF+PS + F   
Sbjct: 138 SVVNALSEYLLLEVNRDGFSYTQEYKDGTPKS-KLKKGGKSNKTGTSITFIPSLETFGKN 196

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++DTL  RLRELSFLNS + I L D+R  + R       GG+E FV++L++ K  + 
Sbjct: 197 RTFDHDTLFKRLRELSFLNSGLSIILKDER--DGRSSNFKSDGGLEEFVTFLNKKKSVIN 254

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +    ++ ++D ++++LA++WND Y EN LC+TNNI QKDGG+HLSG ++ALTR + +++
Sbjct: 255 KPFRFLKETKDGMAVELALQWNDSYQENTLCYTNNIFQKDGGSHLSGFKTALTRSLNNFM 314

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           EK    K    +  G+D REG T+V+S+K+PDP+FSSQTK+KLVSSE++ VVE      L
Sbjct: 315 EKEGYLKSGDLTPSGEDVREGLTAVISVKLPDPKFSSQTKDKLVSSEIKPVVEQETYKHL 374

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L E+P EAK I  K++DAS  R+AAR+AR++TRRKGVLD   LPGKLADC E+DP  
Sbjct: 375 NDFLLENPGEAKQIATKIIDASRAREAARKAREMTRRKGVLDGIGLPGKLADCQEKDPSL 434

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEG+SAGGSAKQGR+R NQAI P++GKILNVERAR DK+L+S EI  +ITALG G
Sbjct: 435 SELYIVEGESAGGSAKQGRNRHNQAIYPMKGKILNVERARIDKVLNSDEIVNIITALGCG 494

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           + ++ FD+ KLRYH ++IMTDADVDG+HIRTLLLTFF+R MP ++  G ++I +PPLY +
Sbjct: 495 L-KEDFDLEKLRYHSVVIMTDADVDGSHIRTLLLTFFYRHMPEVLEAGHIFIAQPPLYKV 553

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            RGKS +Y+K++  L  +L+N+   E I     +K V ++ D  + +     +   ++  
Sbjct: 554 GRGKSEEYIKNDSMLRSFLVNKISQETILHLTKTKKV-TEQDFSSMLASYNSMMDFVESS 612

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-AEKSEKSWHGSINNS-DI 662
             N    FIE  + S  FN    Q+   +    + + LN I AE  E       ++   +
Sbjct: 613 SNNAPTLFIEAILNSKDFN----QKTIAAWLKDINSNLNKISAEDIEIKVDLDKDSKSRL 668

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG-PCS 721
           ++ +   G     +L  S   S G K    F  + +         +    K + T     
Sbjct: 669 IISQTEHGNTLATILPISFFKSKGYKLIMDFKKKSDGIKPNSSFFMKGEAKKEFTDNLID 728

Query: 722 LLDTIFSIGRKG 733
             + +F   +KG
Sbjct: 729 FFEELFEDSKKG 740


>gi|146295090|ref|YP_001178861.1| DNA gyrase, B subunit [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145408666|gb|ABP65670.1| DNA gyrase subunit B [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 637

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/638 (45%), Positives = 414/638 (64%), Gaps = 6/638 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +    N  Y A  IQ+L+GL+AV+KRP MYIG T  + GLHH++YE++DNAIDE++ G+ 
Sbjct: 3   TTKNPNQEYTASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFC 61

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V ++ D S TV D+GRGIP D+H +   S  EV+ T LHAGGKFN+  YKVSGGLH
Sbjct: 62  KNIDVIIHRDNSVTVLDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNESVYKVSGGLH 121

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS +L++ + R+G +Y   +  G     L V G     TGT+VTFLP  +I
Sbjct: 122 GVGASVVNALSRYLEVEVYRDGKVYYQKYERGKPVCDLKVIGQT-QRTGTKVTFLPDDEI 180

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F   +F+ D L  RLREL+FLN  ++I+  D+R   P+ I + Y GGI  FV +L+R+K+
Sbjct: 181 FETIEFDADVLLQRLRELAFLNKGIRITFTDEREKNPKTIELKYDGGIAEFVKFLNRNKE 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI I+G ++ I +++A+++ D + EN+  F NNI   DGGTHL G ++A+T+ + 
Sbjct: 241 VLHPEPIYIEGEKNQILVEVAIQYTDQFGENIYSFANNIATIDGGTHLVGFKAAVTKAVN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y +K     K    ++G+D R+G T+V+S+K+ +P+F  QTK KL +SE R  VE+ V+
Sbjct: 301 EYAKKYNF-VKGDNQLLGEDIRDGMTAVVSVKIHEPQFEGQTKTKLGNSEARWAVENLVS 359

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420
           + L+A+LEE+P  +K I+ K L A+  R+ AR+AR+L  + K  LD ++LPGKLADCSE+
Sbjct: 360 EKLAAFLEENPDVSKKIIDKALLAAKAREEARKARELVIKRKSALDSSNLPGKLADCSEK 419

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP+K E+F+VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A  DK+ S+ ++  LI A
Sbjct: 420 DPEKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASPDKIYSNDKLLPLIQA 479

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG D  D+ KLRYHK+I+M DADVDG+HIRTLLLTFF+R M  LI NG +YI +PP
Sbjct: 480 LGCGIGNDL-DLKKLRYHKVIVMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPP 538

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY IT+GK ++Y  +++ L+   + +    +++ F     + ++      +D A +I   
Sbjct: 539 LYKITKGKQVRYAYNDKELQKI-LQEMKDAQVQRFKGLGEMNAEELWETTMDPARRILLR 597

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           ++       +      +   V       E N      L
Sbjct: 598 VELEDAVMAEEIFTILMGEKVEPRREFIEKNAKYVRNL 635



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  I       L  I  G +++       L  I    
Sbjct: 506 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNDKELQKILQE- 563

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            K   +QR+KGLGEMNA +LWETT++P  R LLRV++ DA  A+++F+ LMG++VEPRRE
Sbjct: 564 MKDAQVQRFKGLGEMNAEELWETTMDPARRILLRVELEDAVMAEEIFTILMGEKVEPRRE 623

Query: 791 FIQENSLPS-ALDI 803
           FI++N+     LDI
Sbjct: 624 FIEKNAKYVRNLDI 637


>gi|288561862|gb|ADC53567.1| DNA gyrase subunit beta [Acidovorax avenae]
          Length = 762

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/766 (43%), Positives = 466/766 (60%), Gaps = 52/766 (6%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85
           P MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT  
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 86  ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
              D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++R+
Sbjct: 61  KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119

Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           G ++ + F             NG+  +P+ VTG   +  GTEV FLP ++IF   + F+Y
Sbjct: 120 GKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHY 178

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  RLRELSFLN+ V+I L D+R+ +         GG+  FV +++  KK L  +   
Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGGVMGFVQFINASKKVLHPNAFH 236

Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             GSR            I +++AM+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR 
Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  
Sbjct: 297 IGKYIEQNEMAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++TRRKGVLD   LPGKLADC E
Sbjct: 357 VAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLIT
Sbjct: 417 KDPAMSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLIT 476

Query: 480 ALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           ALGTGIG+           D F+++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L
Sbjct: 477 ALGTGIGKASADGTGKSGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEL 536

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDL 587
           +  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +L    +    +    +    L
Sbjct: 537 VERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQARTLDGETL 596

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF--- 644
                     + +I+      D+  +         N ++ ++   S  +  A        
Sbjct: 597 GTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDAEASAVALQAKLRELTTT 656

Query: 645 -IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            +  +    +    +   + + R   G  +  V+    +           ++        
Sbjct: 657 GVPAEVAGEFDARTDKPVLRISRRHHGNIKSSVITQDFVHGADYAALAEAAHTFRGLLGE 716

Query: 704 ILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
              ++        + K+      +  +     +  S QRYKGLGEM
Sbjct: 717 GAKVLRGEGERQREEKVGDFRQAMAWLIKEAERTTSRQRYKGLGEM 762


>gi|260221774|emb|CBA30674.1| DNA gyrase subunit B [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 731

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/737 (45%), Positives = 456/737 (61%), Gaps = 37/737 (5%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI------ 151
           + +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L I+R+G ++ + F       
Sbjct: 1   MALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTIRRDGKVHTLEFSKGFVQN 60

Query: 152 ------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNS 204
                 NGI  +P+ + G      GTEV FLP ++IF   + F+Y+ L  RLRELSFLN+
Sbjct: 61  RIVETQNGIEVSPMKIIGDTE-KRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNN 119

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISI 259
            V+I L D+RS +         GG++ FV+Y+++ K  L  +     G R      NI +
Sbjct: 120 GVRIRLKDERSGKE--DDFAGAGGVQGFVNYVNKGKTVLHPNVFHAMGDRQSDQGTNIGV 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WN G++E VLCFTNNIPQ+DGGTHL+GLR+A+TR I+ Y+E++  +KK K  V G
Sbjct: 178 EVAMQWNSGFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVISKYIEQNEMAKKAKVEVTG 237

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG   VLS+K+P+P+FSSQTK+KLVSSEVR  VE  V   L+ +LEE P +AKIIV
Sbjct: 238 DDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEDIVGKLLADYLEERPNDAKIIV 297

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K+++A+  R+AAR+ARD+TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSA
Sbjct: 298 GKIIEAARAREAARKARDMTRRKGVLDGMGLPGKLADCQEKDPAMCEIYIVEGDSAGGSA 357

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ-------DSFDI 492
           KQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLITALGTGIG+       D F++
Sbjct: 358 KQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALGTGIGKAGGSTGGDDFNV 417

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
            KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y
Sbjct: 418 AKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKSGKEELY 477

Query: 553 VKDEESLEDYLINQSLSEEIELFCD-SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           ++    L+ YL+  +L          +   +S + L            +I       D  
Sbjct: 478 LQGPAELDGYLLRIALVNASVYTGGPNGTTLSGDTLAELARKHQLAQAVIARLKNFMDAE 537

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGV 671
            +       V N ++  +  VS A+  A   +    +    +    +   + + R   G 
Sbjct: 538 ALRSVADGVVLNLDTVADAEVSAAALQAKLPDA---EVAGEFDARTDKPILRISRRHHGN 594

Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIF 727
            +  VL    +           +N           ++        + K++     +  + 
Sbjct: 595 VKSSVLTQDFVHGADYAALAEAANTFRGLLSEGARVMRGEGEKQKEEKVSDFREAMAWLI 654

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
               +  S QRYKGLGEMN +QLWETT++P  R LLRV+I DA +AD +F+ LMGDEVEP
Sbjct: 655 GEAERTSSRQRYKGLGEMNPAQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEP 714

Query: 788 RREFIQENSLPS-ALDI 803
           RR+FI+ N+L +  +D+
Sbjct: 715 RRDFIETNALRAGNIDV 731


>gi|288561856|gb|ADC53564.1| DNA gyrase subunit beta [Acidovorax citrulli]
          Length = 762

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/766 (43%), Positives = 464/766 (60%), Gaps = 52/766 (6%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85
           P MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT  
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 86  ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
              D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++R+
Sbjct: 61  KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119

Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           G ++ + F             NG+  +P+ VTG   +  GTEV FLP ++IF   + F+Y
Sbjct: 120 GKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHY 178

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  RLRELSFLN+ V+I L D+R+ +         GG+  FV +++  KK L  +   
Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGGVMGFVQFINASKKVLHPNAFH 236

Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             GSR            I +++AM+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR 
Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  
Sbjct: 297 IGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++TRRKGVLD   LPGKLADC E
Sbjct: 357 VAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLIT
Sbjct: 417 KDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLIT 476

Query: 480 ALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           ALGTGIG+           D F+++KLRYH+IIIMTDADVDGAHIR LLLTFF+RQMP L
Sbjct: 477 ALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDGAHIRALLLTFFYRQMPEL 536

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDL 587
           +  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +L    +    +    +    L
Sbjct: 537 VERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQARTLDGETL 596

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                     + +I+      D+  +         N ++ ++   S  +  A        
Sbjct: 597 STLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDAEASAVALQAKLRELTTT 656

Query: 648 KSEKSWHGS----INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
                  G      +   + + R   G  +  ++    +           ++        
Sbjct: 657 GVPAEVAGEFGARTDKPVLRISRRHHGNIKSSIITQDFVHGADYAALAEAAHTFRGLLGE 716

Query: 704 ILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
              ++        + K++     +  +     +  S QRYKGLGEM
Sbjct: 717 GAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSRQRYKGLGEM 762


>gi|72388569|gb|AAZ67928.1| DNA gyrase subunit B [Psychrobacter jeotgali]
          Length = 754

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/757 (44%), Positives = 460/757 (60%), Gaps = 59/757 (7%)

Query: 27  RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86
           RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +VSDNGRG+P D
Sbjct: 1   RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVSDNGRGVPVD 60

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y
Sbjct: 61  IHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHY 120

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           + ++ +G+ D+ +     A + TGT++ F PS+D+F+   F YD L  RLRELSFLNS V
Sbjct: 121 QQTYTDGVPDSEIQQ-MEATDKTGTQIRFYPSTDVFTGTVFEYDILAKRLRELSFLNSGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+R  +  E    +KGG+  FVSY++  K  + +         D IS+++A++W 
Sbjct: 180 RIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGVNEVFHFTSEQDDGISVEVALQWT 237

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D Y+E VLCFTNNIPQ+DGGTHLSG RSALTR + SY+++    KK+K    GDD REG 
Sbjct: 238 DTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRVLNSYMDRENLFKKEKVVATGDDAREGL 297

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T+++S+K+PDP+FSSQTK+KLVSSEVRS VES ++D  S +L E+P   K +  K++DA+
Sbjct: 298 TAIVSVKVPDPKFSSQTKDKLVSSEVRSAVESAMHDRFSDYLLENPTAGKAVANKIIDAA 357

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+
Sbjct: 358 RARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRK 417

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDA
Sbjct: 418 TQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDA 477

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ 
Sbjct: 478 DVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSS 537

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           ++             I+   L   ++D  +   +            ++    +   + + 
Sbjct: 538 TIDNTKLHVSADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVLLDALTHTPKLSTDM 597

Query: 627 DQEI--NVSLASKLANRL-----------------------------NFIAEKSEKSWHG 655
             +     +   KL  +L                             + +  K + +   
Sbjct: 598 TYDKSVMEAWKEKLQTQLSHFGSDLSPEIELINIHAPVSEAMDAVTADLLGMKPQPTPEP 657

Query: 656 SINN--------------------SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
            I+N                        +      +   ++L+   I S         S 
Sbjct: 658 EIDNLTDDNIESAPESEMLSTKAQWLPRITIYVHQLAHHYLLDAGFINSGEYSKLLRLSA 717

Query: 696 RIEENYLTILSLIC-----NGDKIKITGPCSLLDTIF 727
                      +       N  +I +     L   + 
Sbjct: 718 EWNTLLEDTAFIRRESTTGNSKEIAVRDFDYLWQQMM 754


>gi|295694693|ref|YP_003587931.1| DNA gyrase, B subunit [Bacillus tusciae DSM 2912]
 gi|295410295|gb|ADG04787.1| DNA gyrase, B subunit [Bacillus tusciae DSM 2912]
          Length = 635

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/636 (47%), Positives = 412/636 (64%), Gaps = 11/636 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   N +YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE+L GY
Sbjct: 1   MAEK-SNLTYDESQIQVLEGLEAVRKRPGMYIGATSS-RGLHHLVWEVVDNSIDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N D S TV DNGRGIP   H + G    EV++T LHAGGKF+ K YKVSGGL
Sbjct: 59  CDHIVVRVNPDNSVTVIDNGRGIPVGTHPKLGKPTVEVVLTVLHAGGKFDGKGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL++ + REG+ Y   +  G+   PL   G   + TGT+VTF P  +
Sbjct: 119 HGVGVSVVNALSEWLEVEVWREGSAYRQRYSRGVPVTPLERLGPT-DRTGTQVTFKPDPE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F YD LQ RLREL+FLN+ + I L  + + + R     Y+GGI +FV YL+R K
Sbjct: 178 IFEDVVFQYDILQGRLRELAFLNAGITIIL--EDARDGRRQEFAYQGGIRSFVEYLNRSK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L Q P+ I   +D++ +++A+++NDGY  ++  F NNI   +GGTH SG +SALTR I
Sbjct: 236 EVLHQPPVYIAAEKDDVMVEVALQYNDGYVPSLYSFANNIHTHEGGTHESGFKSALTRVI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K+   K    +V G+D REG T+++S+K+PDP+F  QTK KL +SEVR +VES  
Sbjct: 296 NDYARKNNLLKDSDSNVTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEVRGIVESAF 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +    +LEE+P  A+ IV K + A+  R+AAR+AR+LTRRK  L+++SLPGKL DCS +
Sbjct: 356 GERFVVFLEENPAVARKIVDKCITAARAREAARKARELTRRKNALEVSSLPGKLWDCSSK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  +SEL+LVEGDSAGGSAK GR R  QAILPLRGKILNVE+AR DK+LS+ EI  +ITA
Sbjct: 416 DASESELYLVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARMDKILSNNEIRAIITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGI +  FDI++ RYHK++IMTDADVDG+HIRTLLLTFF+R M  LI  G++YI +PP
Sbjct: 476 IGTGI-EPDFDISRARYHKVVIMTDADVDGSHIRTLLLTFFYRYMRPLIEAGYVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I +GK ++Y   ++  +  +                G +    L         +D  
Sbjct: 535 LYRIQKGKVVRYAYSDQERDHIVGELKGDVNDIQRYKGLGEMDAEQLWET-----TMDPE 589

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +       +  IE   I  V   +  +     + +
Sbjct: 590 SRTLLQVSMQDAIEADAIFSVLMGDRVEPRREFIEA 625



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 5/199 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +  I    E  +  S      +V  
Sbjct: 440 RHFQAIL--PLRGKILNVEKARMDKILSNNEIRAIITAIGTGIEPDFDISRARYHKVVIM 497

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +      I +  +       L  I  G  ++        D I
Sbjct: 498 TDADVDGSHIRTLLLTFFYRYMRPLIEAGYVY-IAQPPLYRIQKGKVVRYAYSDQERDHI 556

Query: 727 FSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
               +  ++ +QRYKGLGEM+A QLWETT++P++R+LL+V + DA +AD +FS LMGD V
Sbjct: 557 VGELKGDVNDIQRYKGLGEMDAEQLWETTMDPESRTLLQVSMQDAIEADAIFSVLMGDRV 616

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRREFI+ ++     LDI
Sbjct: 617 EPRREFIEAHAHFVRNLDI 635


>gi|168702514|ref|ZP_02734791.1| DNA gyrase subunit B [Gemmata obscuriglobus UQM 2246]
          Length = 810

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/811 (38%), Positives = 450/811 (55%), Gaps = 16/811 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++ + N  Y  D++Q LK    ++ RP MYIG+TD   G+HH+++EV+ N++DE+L G+ 
Sbjct: 3   TETLGNVGYTEDNLQTLKDAAHIRHRPGMYIGNTD-IEGMHHLVWEVVYNSVDEALAGFC 61

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I +T++ D S TVSD+GRGIP  +  + G S  E  +T   + GKFN  +YK S GLH
Sbjct: 62  KNIFITVHSDESITVSDDGRGIPVGVKADTGKSTLEEALTIAGSSGKFNNDAYKTSAGLH 121

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           G+G   +NALS W    IKR+G +Y+M F  G   + L   G A    TGT +TF P  +
Sbjct: 122 GMGAKAMNALSEWCTAEIKRDGRVYKMEFEKGYATSKLEDLGPAPKGQTGTTITFKPDPE 181

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F+YD L  R +++SFLN  ++++L D+R  +    T   + GI  +V  L+R +
Sbjct: 182 KFGDILFDYDRLGTRFQQISFLNKGLKLALADERVGKS--DTFHSERGIAEYVEVLNRSE 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +      I I    D +++++  ++  G  +  +CFTNN   KDGGTHLSG R  LTR I
Sbjct: 240 QTNYP-LIYINKQIDGVTVEVCFQYTQGETKLEMCFTNNAYNKDGGTHLSGFRGGLTRAI 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K+      +  + GDD REG T+V++I  P P+F SQTK KL S EV     S V
Sbjct: 299 GHYGKKAN--LFKEIELRGDDFREGLTAVINISHPQPKFESQTKVKLTSPEVEGQTSSVV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-RKGVLDIASLPGKLADCSE 419
            + LS +LE +P EA+ I KKVL  +  R AA++ARD  + RK  L+   LPGKL DCS 
Sbjct: 357 YEVLSDYLERNPKEAERICKKVLLTAEARIAAKKARDAVKGRKDALNSGGLPGKLYDCSS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RD + +ELFLVEGDSAGGSA+ GR RE QAILPLRGK+LNVE+A+F+K+L + EI  LI+
Sbjct: 417 RDRENTELFLVEGDSAGGSAESGRDREFQAILPLRGKVLNVEKAKFEKLLENNEISALIS 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G  I     D++K+RY KIIIMTDADVDG HIRTLLLTFFFRQM  LI  G +++ +P
Sbjct: 477 AVGVDIDNVE-DVSKVRYGKIIIMTDADVDGQHIRTLLLTFFFRQMRKLIEAGHVFVARP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV---ISKNDLRNFIDDALK 596
           PLY +T+ K  ++++  E +   L  + L                IS ++L   +    +
Sbjct: 536 PLYKVTQKKETRFIQSREEMVTQLTTRGLKNTTLRATQVDRPARDISGDELTKLLPLLDE 595

Query: 597 IDKLIKDFYPNHD--KTFIEQAV--ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
            +  +             + +AV  +   +N    ++              F    +++ 
Sbjct: 596 AESAVVGLERRGRNLDELLTRAVDGLFPTYNLYEREKNKEHWFRTTDEVAAFKQALADEL 655

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
               +   D  +            +     F F +                  +L  +G 
Sbjct: 656 KREPVVGEDYTLDEWHDLKSLNRAVTKLKAFGFDAADLVPLQRIAGREPPVRYTLDHDGS 715

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              +     L+  I  +G KGI++ R+KGLGEM+  +LW TTL+P  R+LL+V + DA +
Sbjct: 716 NKSLVSLRELVIEIRRLGEKGIAVTRFKGLGEMDPEELWATTLDPQYRTLLKVTLNDAFK 775

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           A+++F  LMG EV+ R+ FI  NSL S  DI
Sbjct: 776 AEEMFRTLMGKEVQDRKAFIFSNSLKSVEDI 806


>gi|288561858|gb|ADC53565.1| DNA gyrase subunit beta [Acidovorax cattleyae]
          Length = 762

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/766 (43%), Positives = 465/766 (60%), Gaps = 52/766 (6%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85
           P MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT  
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 86  ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
              D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++R+
Sbjct: 61  KMDDKH-EPRRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119

Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           G ++ + F             NG+  +P+ VTG   +  GTEV FLP ++IF     F+Y
Sbjct: 120 GKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENYDFHY 178

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  RLRELSFLN+ V+I L D+R+ +         GG+  FV +++  KK L  +   
Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFAGSGGVMGFVQFINASKKVLHPNAFH 236

Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             GSR            I +++AM+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR 
Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  
Sbjct: 297 IGKYIEQNEMAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++TRRKGVLD   LPGKLADC E
Sbjct: 357 VAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLIT
Sbjct: 417 KDPAMSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLIT 476

Query: 480 ALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           ALGTGIG+           D F+++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L
Sbjct: 477 ALGTGIGKASADGTGRSGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEL 536

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDL 587
           +  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +L    +    +    +    L
Sbjct: 537 VERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQARTLDGETL 596

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF--- 644
                     + +I+      D+  +         N ++ ++   S  +  A        
Sbjct: 597 STLAQKHQVAEAVIERLSAFMDREALRAIADGVSLNLDTVEDAEASAVALQAKLRELTTT 656

Query: 645 -IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            +  +    +    +   + + R   G  +  V+    +           ++        
Sbjct: 657 GVPAEVAGEFDARTDKPVLRISRRHHGNIKSSVITQDFVHGADYAALAEAAHTFRGLLGE 716

Query: 704 ILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
              ++        + K+      +  +     +  S QRYKGLGEM
Sbjct: 717 GAKVLRGEGERQREEKVGDFRQAMSWLIKEAERTTSRQRYKGLGEM 762


>gi|288561860|gb|ADC53566.1| DNA gyrase subunit beta [Acidovorax konjaci]
          Length = 762

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/766 (44%), Positives = 462/766 (60%), Gaps = 52/766 (6%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85
           P MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT  
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 86  ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
              D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++R+
Sbjct: 61  KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119

Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNY 189
           G ++ + F             NG+  +P+ VTG   +  GTEV FLP ++IF    DF+Y
Sbjct: 120 GKVHVLEFSQGFVQNRILETANGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENHDFHY 178

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  RLRELSFLN+ V+I L D+R+ +         GG++ FV +++ +KK L  +   
Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGGVKGFVDFINANKKVLHPTAFH 236

Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             G+R            I +++AM+WNDGY E VLCFTNNIPQ+DGGTHL+GLR+A+TR 
Sbjct: 237 ATGTRPADTYGGIPGTEIGVEVAMQWNDGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y+E+   +KK K  V GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  
Sbjct: 297 IGKYIEQQELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V   L+ +LEE P +AKI+  K+++A+  R+AARRAR++TRRKGVLD   LPGKLADC E
Sbjct: 357 VAKTLTDYLEERPNDAKILCGKIIEAARAREAARRAREMTRRKGVLDGMGLPGKLADCQE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLIT
Sbjct: 417 KDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLIT 476

Query: 480 ALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           ALGTGIG+           D F+++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L
Sbjct: 477 ALGTGIGKASADGTGKSGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEL 536

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG-VISKNDL 587
           +  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +L +        +   +    L
Sbjct: 537 VERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQPRTLDGETL 596

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF--- 644
                     + +I+      D+  +         N ++ Q+   S  +  A        
Sbjct: 597 ATLAQKHQVAEGVIERLSVFMDREALRAIADGVALNLDTVQDAEASAVALQAKLRELTTT 656

Query: 645 -IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            +  +    +    +   + + R   G  +  ++    +           +N        
Sbjct: 657 GVPAEVAGEFDARTDKPILRISRRHHGNIKSSIITQDFVHGADYAALAEAANTFRGLLAE 716

Query: 704 ILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
                          K+      +  +     +  S QRYKGLGEM
Sbjct: 717 GAKAQRGEGDRQRDEKVGDFRQAMAWLIKEAERTTSRQRYKGLGEM 762


>gi|52783861|ref|YP_089690.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580]
 gi|319648524|ref|ZP_08002740.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2]
 gi|52346363|gb|AAU38997.1| GyrB [Bacillus licheniformis ATCC 14580]
 gi|317389603|gb|EFV70414.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2]
          Length = 637

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/586 (49%), Positives = 409/586 (69%), Gaps = 5/586 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           Q ++YD + IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY   I 
Sbjct: 3   QQNNYDENQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCTEIN 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V +  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF+   YKVSGGLHGVG 
Sbjct: 62  VAIEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L + + R+G I+   F  G+    L V G     TGT   F P  +IF+  
Sbjct: 122 SVVNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDTE-VTGTTTHFKPDPEIFTET 180

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI+++V +L+R ++ + 
Sbjct: 181 TEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGIKSYVEHLNRSREVIH 240

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y 
Sbjct: 241 EEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            ++   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ ++  ++ L
Sbjct: 301 RRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEAL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++LPGKLADCS +DP  
Sbjct: 361 EKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKDPTI 420

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 421 SELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 480

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPLY +
Sbjct: 481 IGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPLYKV 539

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            +GK ++Y  +++ LE+ L     + +         G ++   L  
Sbjct: 540 QQGKRVEYAYNDQQLEEILKELPQNPKPGLQRYKGLGEMNATQLWE 585



 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 10/202 (4%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 441 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 498

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    +       L  +  G +++       L+ I
Sbjct: 499 TDADVDGAHIRTLLLTFFYRYMRQIIEQGYVY-IAQPPLYKVQQGKRVEYAYNDQQLEEI 557

Query: 727 FSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
                   + G+  QRYKGLGEMNA+QLWETT++P+TR+LL+V + DA  AD+ F  LMG
Sbjct: 558 LKELPQNPKPGL--QRYKGLGEMNATQLWETTMDPETRTLLQVTLKDAIDADETFEMLMG 615

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRR FI+EN+     LDI
Sbjct: 616 DKVEPRRNFIEENARYVKNLDI 637


>gi|52078497|ref|YP_077288.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580]
 gi|52001708|gb|AAU21650.1| DNA gyrase (subunit B) [Bacillus licheniformis ATCC 14580]
          Length = 639

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/586 (49%), Positives = 409/586 (69%), Gaps = 5/586 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           Q ++YD + IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY   I 
Sbjct: 5   QQNNYDENQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCTEIN 63

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V +  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF+   YKVSGGLHGVG 
Sbjct: 64  VAIEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGA 123

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L + + R+G I+   F  G+    L V G     TGT   F P  +IF+  
Sbjct: 124 SVVNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDTE-VTGTTTHFKPDPEIFTET 182

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI+++V +L+R ++ + 
Sbjct: 183 TEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGIKSYVEHLNRSREVIH 242

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y 
Sbjct: 243 EEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYA 302

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            ++   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ ++  ++ L
Sbjct: 303 RRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEAL 362

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++LPGKLADCS +DP  
Sbjct: 363 EKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKDPTI 422

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 423 SELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 482

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPLY +
Sbjct: 483 IGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPLYKV 541

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            +GK ++Y  +++ LE+ L     + +         G ++   L  
Sbjct: 542 QQGKRVEYAYNDQQLEEILKELPQNPKPGLQRYKGLGEMNATQLWE 587



 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 10/202 (4%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 443 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 500

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    +       L  +  G +++       L+ I
Sbjct: 501 TDADVDGAHIRTLLLTFFYRYMRQIIEQGYVY-IAQPPLYKVQQGKRVEYAYNDQQLEEI 559

Query: 727 FSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
                   + G+  QRYKGLGEMNA+QLWETT++P+TR+LL+V + DA  AD+ F  LMG
Sbjct: 560 LKELPQNPKPGL--QRYKGLGEMNATQLWETTMDPETRTLLQVTLKDAIDADETFEMLMG 617

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRR FI+EN+     LDI
Sbjct: 618 DKVEPRRNFIEENARYVKNLDI 639


>gi|194016365|ref|ZP_03054979.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061]
 gi|194011838|gb|EDW21406.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061]
          Length = 640

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/591 (49%), Positives = 413/591 (69%), Gaps = 5/591 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q++SYD + IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY
Sbjct: 1   MAMEQQHNSYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              ITV +  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF+   YKVSGGL
Sbjct: 60  CTDITVQIEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P ++
Sbjct: 120 HGVGASVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDTE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    F+YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R 
Sbjct: 179 IFTETIEFDYDTLANRVRELAFLTKGVNIVIEDLREGKERRNEYCYEGGIKSYVEHLNRS 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ + + P+ I+G +D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR 
Sbjct: 239 KEVVHEEPVYIEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRV 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S 
Sbjct: 299 INDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSL 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS 
Sbjct: 359 FSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++IT
Sbjct: 419 KDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMIT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M  +I NG++YI +P
Sbjct: 479 ALGTGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PL+ + +GK ++YV +++ L++ L     + +         G ++   L  
Sbjct: 538 PLFKVQQGKRVEYVYNDKQLDELLKTLPQTPKPGLQRYKGLGEMNATQLWE 588



 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 8/201 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 444 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 501

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLL 723
               V    +      F +    + I +  +      +  +        +        LL
Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLFKVQQGKRVEYVYNDKQLDELL 561

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
            T+    + G+  QRYKGLGEMNA+QLWETT++PD R+LL+V + DA  AD+ F  LMGD
Sbjct: 562 KTLPQTPKPGL--QRYKGLGEMNATQLWETTMDPDARTLLQVTLEDAIDADETFEMLMGD 619

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +VEPRR FI+EN+     LDI
Sbjct: 620 KVEPRRNFIEENAQYVKNLDI 640


>gi|89892751|ref|YP_516238.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51]
 gi|219666076|ref|YP_002456511.1| DNA gyrase subunit beta [Desulfitobacterium hafniense DCB-2]
 gi|89332199|dbj|BAE81794.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51]
 gi|219536336|gb|ACL18075.1| DNA gyrase, B subunit [Desulfitobacterium hafniense DCB-2]
          Length = 644

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/588 (50%), Positives = 404/588 (68%), Gaps = 5/588 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + I  + Y+A  I++L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY D
Sbjct: 9   ETIPTNDYNAGQIEVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGYCD 67

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT++ D S +V DNGRGIP D+H + G  A EV +T LHAGGKF+  +YKVSGGLHG
Sbjct: 68  TIEVTIHKDNSISVVDNGRGIPVDIHPKLGKPAVEVALTVLHAGGKFSGSAYKVSGGLHG 127

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDI 181
           VG+SVVNALS+WL + ++++GNIY   F+ G     L V G    N TGT +TF P  +I
Sbjct: 128 VGMSVVNALSTWLHVEVRKDGNIYHQEFMRGKTKTELAVIGQVDPNQTGTTITFSPDPEI 187

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F +DTL HRLRELSFLN  V I+LID R  +      ++ GGI  FV Y++R K+
Sbjct: 188 FEDTVFLFDTLAHRLRELSFLNKKVSITLIDAREDKK--EVYYHTGGIYDFVKYINRSKE 245

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI  +  +D + ++++M++NDGY EN+  + NNI   +GGTH SG ++ALTR   
Sbjct: 246 SLHPEPIYFEAEKDGVQVEVSMQYNDGYVENLFSYANNIHTHEGGTHESGFKAALTRVAN 305

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K ++ ++ G+D REG T+V+S+K+P+P+F  QTK KL +SE+RS+V+S   
Sbjct: 306 DYARKNNILKANEANLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITG 365

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +GLSA+ EE+P   K +++K + AS  R+AAR+AR+LTRRK  L++++LPGKLADCS ++
Sbjct: 366 EGLSAFFEENPAIGKKVIEKSIQASRAREAARKARELTRRKSALEVSALPGKLADCSWKE 425

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            +  E+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L + EI  +ITA+
Sbjct: 426 AELCEMYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRAMITAM 485

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGI  + FDI K RYHK++IMTDADVDGAHIR LLLTFFFR M  L+ N ++YI +PPL
Sbjct: 486 GTGI-SEDFDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPL 544

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + + +GK + YV   E L                    G ++   L  
Sbjct: 545 FKVKKGKDIHYVYSNEELAKLQDEIGRDRVEIQRYKGLGEMNAEQLWE 592



 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +  +     + +         LV      V    +    
Sbjct: 461 ILNVEKARLDRILGNAEIRAMITAMGTGISEDFDIEKARYHKLVIMTDADVDGAHIRILL 520

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      + +N +      +  +    D   +     L      IGR  + +QRYK
Sbjct: 521 LTFFFRYMKPLLENNYVYIAQPPLFKVKKGKDIHYVYSNEELAKLQDEIGRDRVEIQRYK 580

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLWETT++P  R++L+V + DA +AD+LF+ LMGD VEPRREFIQ+N+    
Sbjct: 581 GLGEMNAEQLWETTMDPAKRTILQVTMEDAIKADELFTILMGDVVEPRREFIQDNAQYVR 640

Query: 800 ALDI 803
            LD+
Sbjct: 641 NLDV 644


>gi|296131558|ref|YP_003638805.1| DNA topoisomerase IV, B subunit [Thermincola sp. JR]
 gi|296030136|gb|ADG80904.1| DNA topoisomerase IV, B subunit [Thermincola potens JR]
          Length = 635

 Score =  648 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/620 (48%), Positives = 416/620 (67%), Gaps = 14/620 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   N +Y A  IQ+L+GL+AV++RP MYIG T    GLHH++YEV+DN+IDE+L G+ D
Sbjct: 2   EQNTNHNYGASQIQVLEGLEAVRRRPGMYIGSTS-TRGLHHLVYEVVDNSIDEALAGFCD 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V ++ D S TV DNGRGIP D+H + G  A EV++T LHAGGKF    YKVSGGLHG
Sbjct: 61  KIEVIIHHDNSITVIDNGRGIPVDIHPKIGKPAVEVVLTILHAGGKFGGDGYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS WL++ +KR+ +IY   +  G+    L + G + N TGT++TF P  +IF
Sbjct: 121 VGVSVVNALSEWLEVEVKRDNHIYHQRYERGLPVTELKIIGDS-NSTGTKITFKPDHEIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FN++TL  RL+ELSFLN  + I L D+R  +  E T  ++GGI  FV +L+++K  
Sbjct: 180 EDLVFNFETLSQRLKELSFLNKGLTIILKDER--DGNEKTFQHEGGIIDFVKHLNKNKDV 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L   PI  +G +D++ +++A+++NDGY EN+  F NNI   +GGTH +G ++ALTR +  
Sbjct: 238 LHPEPIYFEGEKDDVMVEIALQYNDGYTENIFSFVNNIHTHEGGTHEAGFKTALTRVVND 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K    K+++ ++ G+D REG T+++S+K+ +P+F  QTK KL +SEVR +V++ V +
Sbjct: 298 YARKYNLLKENENNLTGEDIREGLTAIISVKVREPQFEGQTKTKLGNSEVRGIVDAVVVE 357

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           G+  +LEEHP  AK I +K ++A+  R+AAR+AR+LTRRK  L+  SLPGKLADCS +DP
Sbjct: 358 GVGTFLEEHPPFAKRITEKAINAARAREAARKARELTRRKNALESTSLPGKLADCSLKDP 417

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
              EL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L+++EI  +ITA+G
Sbjct: 418 AVCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKVLANEEIRAMITAMG 477

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGI  D FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +PPLY
Sbjct: 478 TGI-SDDFDISKARYHKLIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLY 536

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + + K   YV  +  LE  L                G ++   L          +  + 
Sbjct: 537 KVKKNKIDNYVYSDHELEKLLNQIGREGVSLQRYKGLGEMNPEQLW---------ETTMN 587

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A+I+   
Sbjct: 588 PETRTILRVNLEDAMIADEI 607



 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 91/186 (48%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    ++   +  +       +  S      L+      V    +   +
Sbjct: 452 ILNVEKARLDKVLANEEIRAMITAMGTGISDDFDISKARYHKLIIMTDADVDGAHI--RT 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK--ITGPCSLLDTIFSIGRKGISMQR 738
            + +F  +Y R                    +KI   +     L   +  IGR+G+S+QR
Sbjct: 510 LLLTFFYRYMRPLIEAGYVYIAQPPLYKVKKNKIDNYVYSDHELEKLLNQIGREGVSLQR 569

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT+NP+TR++LRV + DA  AD++F+ LMGD+VEPRREFIQ ++  
Sbjct: 570 YKGLGEMNPEQLWETTMNPETRTILRVNLEDAMIADEIFTILMGDKVEPRREFIQTHAKE 629

Query: 799 S-ALDI 803
              LDI
Sbjct: 630 VRNLDI 635


>gi|224994125|dbj|BAH28875.1| DNA gyrase subunit B [Psychrobacter aquimaris]
          Length = 737

 Score =  648 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/740 (45%), Positives = 458/740 (61%), Gaps = 49/740 (6%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H 
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVDIHP 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y  +
Sbjct: 61  EEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQT 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G+ D  +       + TGT++ F PSSD+F+   F YD L  RLRELSFLNS V+I 
Sbjct: 121 YTDGVPDADIQQ-MEPTDKTGTQIRFYPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIV 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+R  +  E    +KGG+  FVSY++  K  + +    +    D IS+++A++W D Y
Sbjct: 180 LTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINEVFHFVSEQDDGISVEVALQWTDTY 237

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           +E VLCFTNNIPQ+DGGTHLSG RSALTR + SY+++    KK+K    GDD REG T++
Sbjct: 238 NEKVLCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVVATGDDAREGLTAI 297

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +L E+P   K I  K++DA+  R
Sbjct: 298 VSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIANKIIDAARAR 357

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           DAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QA
Sbjct: 358 DAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQA 417

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVD
Sbjct: 418 ILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVD 477

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ ++ 
Sbjct: 478 GSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTID 537

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
                       I+   L   ++D  +   +            ++    +   + +   +
Sbjct: 538 NTKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVLLDALTHTPKLSTDMTYD 597

Query: 630 --INVSLASKLANRLNF----IAEKSE--------------------------KSWHGSI 657
                +    +  +L+     ++ + E                          ++  G  
Sbjct: 598 LPAMQAWKDAMQTQLDHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMKPAVETIDGEA 657

Query: 658 NNSDIL---------VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
           ++S++L         +      +   ++L+ S I S         S            + 
Sbjct: 658 SDSEVLSAKAQWLPRITVYVHQLAHHYLLDASFINSSEYSKLLRLSAEWNTLLAEDAFIR 717

Query: 709 CNG-----DKIKITGPCSLL 723
                     I +     L 
Sbjct: 718 REATAGTTKDIPVRDFDYLW 737


>gi|20090442|ref|NP_616517.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina
           acetivorans C2A]
 gi|19915457|gb|AAM04997.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina
           acetivorans C2A]
          Length = 634

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/589 (51%), Positives = 403/589 (68%), Gaps = 7/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD      YDA  IQ+L+GL+AV+KRPSMYIG TD   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSDKQV---YDASRIQVLEGLEAVRKRPSMYIGSTDS-RGLHHLVYEVVDNSIDEALAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              + VT+N DGS TV DNGRGIP D H     SA EV+MT LHAGGKF++ +YKVSGGL
Sbjct: 57  CTRVDVTINPDGSVTVLDNGRGIPIDPHPVHKKSALEVVMTVLHAGGKFDKNTYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL + ++R+G  Y   +I G  +  +  TG     TGT+ TF P + 
Sbjct: 117 HGVGVSVVNALSEWLNVEVERDGKKYFQRYIRGKPEAEVQETG-TSEITGTKTTFKPDAR 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   DF YD L +RLREL+FLN  + I+L D RSPE +  T  Y GGI  FV YL++ K
Sbjct: 176 IFETTDFQYDILSNRLRELAFLNRGLTINLKDLRSPEGQAETFIYSGGIVEFVEYLNKKK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL + PI  +  RD++ +++AM++ + Y ENV  F NNI   +GGTH+ G ++ALTR  
Sbjct: 236 QPLHEKPIYFERQRDDMVVEIAMQYTNSYTENVYSFANNINTHEGGTHIIGFKTALTRVA 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y++ +    K+   + GDD REG T+++S+K+ +P+F  QTK +L +SEV+ +V+S V
Sbjct: 296 NDYIKANK-LSKEDAKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSEVKGIVDSLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            DGL+ + EE+P  A +I++K L A   R+AA++AR+LTRRK  L++++LPGKLADCSE+
Sbjct: 355 TDGLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKSALEVSTLPGKLADCSEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E+++VEG+SAGGSAKQGR R  QAILPLRGKILNVE++R  K+L + E+ +LITA
Sbjct: 415 DPSVCEIYIVEGNSAGGSAKQGRDRGFQAILPLRGKILNVEKSRLAKILKNNEVVSLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTG+  + F +   RYHK+I+MTDADVDGAHIRTLLLT FFR M  LI  G++YI +PP
Sbjct: 475 LGTGV-SEDFALESARYHKVILMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I +GKS  Y+  +  LE                   G ++   L  
Sbjct: 534 LYRIKKGKSEYYIHSDRELEVKKKELGEKGLAIQRYKGLGEMNPEQLWE 582



 Score =  187 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++ + +  +     + +         ++      V    +    
Sbjct: 451 ILNVEKSRLAKILKNNEVVSLITALGTGVSEDFALESARYHKVILMTDADVDGAHIRTLL 510

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               F      I +  +      +  +     +  I     L      +G KG+++QRYK
Sbjct: 511 LTLFFRYMRPLIDAGYVYIAQPPLYRIKKGKSEYYIHSDRELEVKKKELGEKGLAIQRYK 570

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-S 799
           GLGEMN  QLWETT+NP++R+LL+V + DA +AD++F  LMGDEVEPRR FI+ ++    
Sbjct: 571 GLGEMNPEQLWETTMNPESRTLLQVTLEDALRADEIFRVLMGDEVEPRRNFIETHAKEVV 630

Query: 800 ALDI 803
            LDI
Sbjct: 631 DLDI 634


>gi|312877900|ref|ZP_07737845.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795326|gb|EFR11710.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A]
          Length = 637

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/636 (45%), Positives = 416/636 (65%), Gaps = 6/636 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N  +  Y A  IQ+L+GL+AV+KRP MYIG T  + GLHH++YE++DNAIDE++ G+   
Sbjct: 5   NTNSQEYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 63

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV D+GRGIP D+H +   S  EV+ T LHAGGKFN++ YKVSGGLHGV
Sbjct: 64  IEVVIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 123

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS +L++ + R+G +Y   +  G     L V G   N TGT+VTFLP  +IF 
Sbjct: 124 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIGET-NSTGTKVTFLPDDEIFE 182

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+ D +  RLREL+FLN  ++I  +D+R    + I + Y GGI  FV +L+R+K+ L
Sbjct: 183 TIEFDGDVILQRLRELAFLNKGIRIVFVDEREKNAKPIELKYDGGIAEFVKFLNRNKEVL 242

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q PI I+G +++I I++A+++ + + EN+  F NNI   DGGTHL G ++A+T+ +  Y
Sbjct: 243 HQEPIYIEGEKNDILIEVAIQYTEDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 302

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K    K     ++G+D R+G T+++S+K+ +P+F  QTK KL +SE R  VE+ V++ 
Sbjct: 303 AKKYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEK 361

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422
           L+A+LEE+P  +K I+ K + A+  R+ A++AR+L  + K  LD ++LPGKLADCSE+DP
Sbjct: 362 LAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 421

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+F+VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A  DK+ S+ ++  LI ALG
Sbjct: 422 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 481

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG D  D+ KLRYHKIIIM DADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY
Sbjct: 482 VGIGNDI-DLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            IT+GK ++Y  +E+ L+   + +    +++ F     + ++      +D A +I   ++
Sbjct: 541 KITKGKQVRYAYNEKELQRI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 599

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                  +      +   V       E N      L
Sbjct: 600 LEDAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 635



 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  I       L  I  G +++       L  I    
Sbjct: 506 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNEKELQRILQE- 563

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            K   +QR+KGLGEMNA +LWETT++P  R LLRV++ DA  A+++F+ LMGD+VEPRRE
Sbjct: 564 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 623

Query: 791 FIQENSLPS-ALDI 803
           FI++N+     LDI
Sbjct: 624 FIEKNAKYVRNLDI 637


>gi|312792288|ref|YP_004025211.1| DNA gyrase subunit B [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179428|gb|ADQ39598.1| DNA gyrase, B subunit [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 637

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/636 (45%), Positives = 416/636 (65%), Gaps = 6/636 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N  +  Y A  IQ+L+GL+AV+KRP MYIG T  + GLHH++YE++DNAIDE++ G+   
Sbjct: 5   NTNSQEYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 63

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV D+GRGIP D+H +   S  EV+ T LHAGGKFN++ YKVSGGLHGV
Sbjct: 64  IEVVIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 123

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS +L++ + R+G +Y   +  G     L V G   N TGT+VTFLP  +IF 
Sbjct: 124 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIGET-NRTGTKVTFLPDDEIFE 182

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+ D +  RLREL+FLN  ++I  +D+R    + I + Y GGI  FV +L+R+K+ L
Sbjct: 183 TIEFDGDVILQRLRELAFLNKGIRIVFVDEREKNAKPIELKYDGGIAEFVKFLNRNKEVL 242

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q PI I+G +++I I++A+++ + + EN+  F NNI   DGGTHL G ++A+T+ +  Y
Sbjct: 243 HQEPIYIEGEKNDILIEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 302

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K    K     ++G+D R+G T+++S+K+ +P+F  QTK KL +SE R  VE+ V++ 
Sbjct: 303 AKKYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEK 361

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422
           L+A+LEE+P  +K I+ K + A+  R+ A++AR+L  + K  LD ++LPGKLADCSE+DP
Sbjct: 362 LAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 421

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+F+VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A  DK+ S+ ++  LI ALG
Sbjct: 422 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 481

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG D  D+ KLRYHKIIIM DADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY
Sbjct: 482 VGIGNDI-DLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            IT+GK ++Y  +E+ L+   + +    +++ F     + ++      +D A +I   ++
Sbjct: 541 KITKGKQVRYAYNEKELQRI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 599

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                  +      +   V       E N      L
Sbjct: 600 LEDAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 635



 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  I       L  I  G +++       L  I    
Sbjct: 506 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNEKELQRILQE- 563

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            K   +QR+KGLGEMNA +LWETT++P  R LLRV++ DA  A+++F+ LMGD+VEPRRE
Sbjct: 564 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 623

Query: 791 FIQENSLPS-ALDI 803
           FI++N+     LDI
Sbjct: 624 FIEKNAKYVRNLDI 637


>gi|157690804|ref|YP_001485266.1| DNA gyrase subunit B [Bacillus pumilus SAFR-032]
 gi|157679562|gb|ABV60706.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bacillus pumilus
           SAFR-032]
          Length = 642

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/588 (50%), Positives = 412/588 (70%), Gaps = 5/588 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q++SYD + IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY   
Sbjct: 6   EQQHNSYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGYCTD 64

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           ITV +  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF+   YKVSGGLHGV
Sbjct: 65  ITVQIEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 124

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+
Sbjct: 125 GASVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDPEIFT 183

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ 
Sbjct: 184 ETIEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEV 243

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + + P+ I+G RD I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  
Sbjct: 244 VHEEPVYIEGERDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVIND 303

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++
Sbjct: 304 YARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSE 363

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP
Sbjct: 364 ALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDP 423

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG
Sbjct: 424 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 483

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M  +I NG++YI +PPLY
Sbjct: 484 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLY 542

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            + +GK ++YV +++ L++ L + S + +         G ++   L  
Sbjct: 543 KVQQGKRVEYVYNDKQLDELLKSLSQTPKPGLQRYKGLGEMNAAQLWE 590



 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 446 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 503

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITG---PCSL 722
               V    +      F +    + I +  +       L  +  G +++ +        L
Sbjct: 504 TDADVDGAHIRTLLLTFFYRYMREIIENGYVY-IAQPPLYKVQQGKRVEYVYNDKQLDEL 562

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L ++    + G+  QRYKGLGEMNA+QLWETT++PD R+LL+V + DA  AD+ F  LMG
Sbjct: 563 LKSLSQTPKPGL--QRYKGLGEMNAAQLWETTMDPDARTLLQVTLEDAIDADETFEMLMG 620

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRR FI+EN+     LDI
Sbjct: 621 DKVEPRRNFIEENAQYVKNLDI 642


>gi|301629588|ref|XP_002943920.1| PREDICTED: DNA gyrase subunit B-like [Xenopus (Silurana)
           tropicalis]
          Length = 554

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/552 (59%), Positives = 428/552 (77%), Gaps = 4/552 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEE-NTNTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS +
Sbjct: 120 HGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFRPSDE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 179 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 237 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 297 NTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PP
Sbjct: 477 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 536

Query: 541 LYGITRGKSLQY 552
           LY + + KS   
Sbjct: 537 LYKVKKDKSRLQ 548


>gi|312621133|ref|YP_004022746.1| DNA gyrase subunit B [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201600|gb|ADQ44927.1| DNA gyrase, B subunit [Caldicellulosiruptor kronotskyensis 2002]
          Length = 650

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/636 (45%), Positives = 417/636 (65%), Gaps = 6/636 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N  +  Y A  IQ+L+GL+AV+KRP MYIG T  + GLHH++YE++DNAIDE++ G+   
Sbjct: 18  NTNSQQYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 76

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV D+GRGIP D+H +   S  EV+ T LHAGGKFN++ YKVSGGLHGV
Sbjct: 77  IEVVIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 136

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS +L++ + R+G +Y   +  G     L V G   + TGT+VTFLP  +IF 
Sbjct: 137 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFE 195

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+ D +  RLREL+FLN  ++I  +D+R    + + + Y GGI  FV +L+R+K+ L
Sbjct: 196 TIEFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPVELKYDGGIAEFVKFLNRNKEVL 255

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q PI I+G +++I I++A+++ + + EN+  F NNI   DGGTHL G ++A+T+ +  Y
Sbjct: 256 HQEPIYIEGEKNDILIEIAIQYTEDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 315

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K    K     ++G+D R+G T+++S+K+ +P+F  QTK KL +SE R  VE+ V++ 
Sbjct: 316 AKKYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSER 374

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422
           L+A+LEE+P  +K I+ K + A+  R+ A++AR+L  + K  LD ++LPGKLADCSE+DP
Sbjct: 375 LAAFLEENPDISKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 434

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+F+VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A  DK+ S+ ++  LI ALG
Sbjct: 435 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 494

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG D  D+ KLRYHK+IIM DADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY
Sbjct: 495 VGIGNDI-DLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 553

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            IT+GK ++Y  +++ L+  ++ +    +++ F     + ++      +D A +I   ++
Sbjct: 554 KITKGKQVRYAYNDKELQK-VLQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 612

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                  +      +   V       E N      L
Sbjct: 613 LEDAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 648



 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  I       L  I  G +++       L  +    
Sbjct: 519 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNDKELQKVLQE- 576

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            K   +QR+KGLGEMNA +LWETT++P  R LLRV++ DA  A+++F+ LMGD+VEPRRE
Sbjct: 577 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 636

Query: 791 FIQENSLPS-ALDI 803
           FI++N+     LDI
Sbjct: 637 FIEKNAKYVRNLDI 650


>gi|222528063|ref|YP_002571945.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|222454910|gb|ACM59172.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 650

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/636 (45%), Positives = 416/636 (65%), Gaps = 6/636 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N  +  Y A  IQ+L+GL+AV+KRP MYIG T  + GLHH++YE++DNAIDE++ G+   
Sbjct: 18  NTNSQQYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 76

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV D+GRGIP D+H +   S  EV+ T LHAGGKFN++ YKVSGGLHGV
Sbjct: 77  IEVVIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 136

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS +L++ + R+G +Y   +  G     L V G   + TGT+VTFLP  +IF 
Sbjct: 137 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFE 195

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+ D +  RLREL+FLN  ++I  +D+R    + + + Y GGI  FV +L+R+K+ L
Sbjct: 196 TIEFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPVELKYDGGIAEFVKFLNRNKEVL 255

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q PI I+G +++I I++A+++ + + EN+  F NNI   DGGTHL G ++A+T+ +  Y
Sbjct: 256 HQEPIYIEGEKNDILIEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 315

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K    K     ++G+D R+G T+++S+K+ +P+F  QTK KL +SE R  VE+ V++ 
Sbjct: 316 AKKYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSER 374

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422
           L+A+LEE+P  +K I+ K + A+  R+ A++AR+L  + K  LD ++LPGKLADCSE+DP
Sbjct: 375 LAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 434

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+F+VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A  DK+ S+ ++  LI ALG
Sbjct: 435 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 494

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG D  D+ KLRYHK+IIM DADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY
Sbjct: 495 VGIGNDI-DLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 553

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            IT+GK ++Y  +++ L+   + +    +++ F     + ++      +D A +I   ++
Sbjct: 554 KITKGKQVRYAYNDKELQKI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 612

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                  +      +   V       E N      L
Sbjct: 613 LEDAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 648



 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  I       L  I  G +++       L  I    
Sbjct: 519 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNDKELQKILQE- 576

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            K   +QR+KGLGEMNA +LWETT++P  R LLRV++ DA  A+++F+ LMGD+VEPRRE
Sbjct: 577 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 636

Query: 791 FIQENSLPS-ALDI 803
           FI++N+     LDI
Sbjct: 637 FIEKNAKYVRNLDI 650


>gi|312126267|ref|YP_003991141.1| DNA gyrase subunit B [Caldicellulosiruptor hydrothermalis 108]
 gi|311776286|gb|ADQ05772.1| DNA gyrase, B subunit [Caldicellulosiruptor hydrothermalis 108]
          Length = 637

 Score =  645 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/636 (45%), Positives = 415/636 (65%), Gaps = 6/636 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              +  Y A  IQ+L+GL+AV+KRP MYIG T  + GLHH++YE++DNAIDE++ G+   
Sbjct: 5   QNGSQQYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 63

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV D+GRGIP D+H +   S  EV+ T LHAGGKFN++ YKVSGGLHGV
Sbjct: 64  IEVVIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 123

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS +L++ + R+G +Y   +  G     L V G   + TGT+VTFLP  +IF 
Sbjct: 124 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFE 182

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+ D +  RLREL+FLN  ++I  +D+R    + I + Y GGI  FV +L+R+K+ L
Sbjct: 183 TIEFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPIELKYNGGIAEFVKFLNRNKEVL 242

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q PI I+G +++I I++A+++ + + EN+  F NNI   DGGTHL G ++A+T+ +  Y
Sbjct: 243 HQEPIYIEGEKNDILIEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 302

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K    K     ++G+D R+G T+++S+K+ +P+F  QTK KL +SE R  VE+ V++ 
Sbjct: 303 AKKYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEK 361

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422
           L+A+LEE+P  +K I+ K + A+  R+ A++AR+L  + K  LD ++LPGKLADCSE+DP
Sbjct: 362 LAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 421

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+F+VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A  DK+ S+ ++  LI ALG
Sbjct: 422 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 481

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG D  D+ KLRYHKIIIM DADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY
Sbjct: 482 VGIGNDI-DLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            IT+GK ++Y  +++ L+   + +    +++ F     + ++      +D A +I   ++
Sbjct: 541 KITKGKQVRYAYNDKELQKI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 599

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                  +      +   V       E N      L
Sbjct: 600 LEDAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 635



 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  I       L  I  G +++       L  I    
Sbjct: 506 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNDKELQKILQE- 563

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            K   +QR+KGLGEMNA +LWETT++P  R LLRV++ DA  A+++F+ LMGD+VEPRRE
Sbjct: 564 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 623

Query: 791 FIQENSLPS-ALDI 803
           FI++N+     LDI
Sbjct: 624 FIEKNAKYVRNLDI 637


>gi|268318257|ref|YP_003291976.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252]
 gi|262335791|gb|ACY49588.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252]
          Length = 649

 Score =  645 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/597 (51%), Positives = 409/597 (68%), Gaps = 10/597 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +   + S+Y A +IQIL+GL+AV+KRP+MYIGD  G  GLHH++YEV+DNAIDE++ GY 
Sbjct: 3   TRPAEASNYVASNIQILEGLEAVRKRPAMYIGDV-GIRGLHHLVYEVVDNAIDEAMAGYC 61

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT+N DGS TV DNGRGIP D H  E  SA EV+MT LHAGGKF++ +YKVSGGLH
Sbjct: 62  DRIAVTINEDGSITVEDNGRGIPVDEHPTEKRSALEVVMTTLHAGGKFDKSTYKVSGGLH 121

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSS 179
           GVGVS VNALS  L   +KR+G ++  ++  G   +P+          +TGT V F P  
Sbjct: 122 GVGVSCVNALSRKLIATVKRDGYVWRQTYAYGKPTSPVERVRPMREDEETGTIVQFWPDP 181

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISL--IDKRSPEPREITMFYKGGIEAFVSYLD 237
            IF   +F +DTL  RLREL++LN  V+IS+    +     R    +++GG+  FV YLD
Sbjct: 182 TIFKTVEFRFDTLAERLRELAYLNRGVRISIEDRREEDESLRYEEYYFEGGLVEFVQYLD 241

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             + P+    I I G  D++ +++A+R+NDGY ENVL F NNI   +GGTH++G R+ALT
Sbjct: 242 ETRTPIHDEVIYIAGEADDVVVEVALRYNDGYAENVLSFVNNINTHEGGTHVAGFRTALT 301

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y EK+   K  K  + G+D REG T+V+S+K+P+P+F  QTK KL +SEV+ +V 
Sbjct: 302 RTLKAYAEKNNLLKNFKGELSGEDFREGLTAVISVKVPEPQFEGQTKTKLGNSEVQGIVA 361

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V++ LS WLE+HP EA+ I+ KV+ A+  R AAR+AR+L +RK  L+ +SLPGKLADC
Sbjct: 362 GIVSEHLSRWLEDHPREARRILDKVILAAQARVAARKARELVQRKNALNGSSLPGKLADC 421

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           + RDP K ELFLVEGDSAGGSAKQ R+RE QAILPLRGKILNVE+AR DK+L + EI  +
Sbjct: 422 ASRDPSKCELFLVEGDSAGGSAKQARNREFQAILPLRGKILNVEKARLDKILENDEIRNI 481

Query: 478 ITALGTGIG--QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +TALGTG+   ++ FD++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQ+  L+  G++Y
Sbjct: 482 VTALGTGLATTEEDFDLSKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQLRPLVEGGYIY 541

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +  GK+ +Y   +E L   +           +       G ++   L  
Sbjct: 542 IALPPLYRVKVGKTERYAWSDEELRQIVEELTDGQPQRAVIQRYKGLGEMNPEQLWE 598



 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 54/68 (79%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  QLWETT+NP+TR L +V + DA+ AD +FS LMGD VEPRR+FI+ N
Sbjct: 582 IQRYKGLGEMNPEQLWETTMNPETRILQQVTVEDAAAADRIFSILMGDAVEPRRKFIERN 641

Query: 796 SLPSALDI 803
           +  + LD+
Sbjct: 642 ARYATLDV 649


>gi|199601525|dbj|BAG70958.1| DNA gyrase subunit B [Psychrobacter pulmonis]
          Length = 626

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/624 (52%), Positives = 434/624 (69%), Gaps = 5/624 (0%)

Query: 27  RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86
           RP MYIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D
Sbjct: 2   RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVD 61

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H EEG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y
Sbjct: 62  IHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHY 121

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
             ++ +G+ D  +     A N TGT++ F PS+D+F+   F YD L  RLRELSFLNS V
Sbjct: 122 HQTYTDGVPDADIQQ-MEATNKTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGV 180

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+R  +  E    +KGG+  FVSY++  K  + +         D IS+++A++W 
Sbjct: 181 RIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINEVFHFTSEQDDGISVEVALQWT 238

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D Y+E VLCFTNNIPQ+DGGTHLSG RSALTR + SY+++    KK+K    GDD REG 
Sbjct: 239 DTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKIVATGDDAREGL 298

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +L E+P   K I  K++DA+
Sbjct: 299 TAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIANKIIDAA 358

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+
Sbjct: 359 RARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRK 418

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDA
Sbjct: 419 TQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDA 478

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ 
Sbjct: 479 DVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSS 538

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           ++             I+   L   ++D  +   +       +    ++    +   + + 
Sbjct: 539 TIDNTKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDM 598

Query: 627 DQEI--NVSLASKLANRLNFIAEK 648
             +     +  + L  +L      
Sbjct: 599 TYDKSVMEAWKASLQTQLEHFGSD 622


>gi|302870737|ref|YP_003839373.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302573596|gb|ADL41387.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 638

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/634 (45%), Positives = 415/634 (65%), Gaps = 6/634 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   Y A  IQ+L+GL+AV+KRP MYIG T  + GLHH++YE++DNAIDE++ GY   I 
Sbjct: 8   EKQEYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGYCKNIE 66

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V ++ D S TV D+GRGIP D+H +   S  EV+ T LHAGGKFN++ YKVSGGLHGVG 
Sbjct: 67  VIIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGVGA 126

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS +L++ + R+G +Y   +  G     L V G   + TGT+VTFLP  +IF   
Sbjct: 127 SVVNALSCYLEVEVYRDGKVYYQRYEKGKPVCELKVIG-TTDKTGTKVTFLPDDEIFETI 185

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+ D +  RLREL+FLN  ++I  +D+R   P+ + + Y GGI  FV +L+R+K+ L Q
Sbjct: 186 EFDGDVILQRLRELAFLNKGIRIVFLDEREKNPKPVELKYDGGIAEFVKFLNRNKEVLHQ 245

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI I+G +++I I++A+++ D + EN+  F NNI   DGGTHL G ++A+T+ +  Y +
Sbjct: 246 EPIYIEGEKNDILIEVAVQYTDDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEYAK 305

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K     ++G+D R+G T+++S+K+ +P+F  QTK KL +SE R  VE+ V++ L+
Sbjct: 306 KYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEKLA 364

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDPKK 424
            +LEE+P  +K I+ K + A+  R+ A++AR+L  + K  LD ++LPGKLADCSE+DP K
Sbjct: 365 TFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDPAK 424

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E+F+VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A  DK+ S+ ++  LI ALG G
Sbjct: 425 CEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALGVG 484

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D  D+ KLRYHK+IIM DADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY I
Sbjct: 485 IGNDI-DLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKI 543

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
           T+GK ++Y  +E+ L+   + +    +++ F     + ++      +D A +I   ++  
Sbjct: 544 TKGKQVRYAYNEKELQKI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELE 602

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                +      +   V       E N      L
Sbjct: 603 DAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 636



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  I       L  I  G +++       L  I    
Sbjct: 507 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNEKELQKILQE- 564

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            K   +QR+KGLGEMNA +LWETT++P  R LLRV++ DA  A+++F+ LMGD+VEPRRE
Sbjct: 565 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 624

Query: 791 FIQENSLPS-ALDI 803
           FI++N+     LDI
Sbjct: 625 FIEKNAKYVRNLDI 638


>gi|312134087|ref|YP_004001425.1| DNA gyrase subunit B [Caldicellulosiruptor owensensis OL]
 gi|311774138|gb|ADQ03625.1| DNA gyrase, B subunit [Caldicellulosiruptor owensensis OL]
          Length = 637

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/636 (45%), Positives = 416/636 (65%), Gaps = 6/636 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N     Y A  IQ+L+GL+AV+KRP MYIG T  + GLHH++YE++DNAIDE++ G+   
Sbjct: 5   NNSTQEYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 63

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++   S TV D+GRGIP D+H + G S  EV+ T LHAGGKFN++ YKVSGGLHGV
Sbjct: 64  IEVVIHKGNSVTVIDDGRGIPVDIHPKLGKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 123

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS +L++ + R+G IY   +  G     L V G   + TGT+VTFLP  +IF 
Sbjct: 124 GASVVNALSRYLEVEVYRDGKIYYQRYERGRPTCELKVIG-TTDKTGTKVTFLPDDEIFE 182

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+ D +  RLREL+FLN  ++I  +D+R   P+ + + Y GGI  FV +L+R+K+ L
Sbjct: 183 TIEFDGDVILQRLRELAFLNKGIRIVFLDEREKNPKPVELKYDGGIAEFVKFLNRNKEVL 242

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q PI I+G +++I I++AM++ D + EN+  F NNI   DGGTHL G ++A+T+ +  Y
Sbjct: 243 HQEPIYIEGEKNDILIEVAMQYTDDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 302

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K     K    ++G+D R+G T+++S+K+ +P+F  QTK KL +SE R  VE+ V++ 
Sbjct: 303 AKKYN-LTKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEK 361

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422
           L+A+LEE+P  +K I+ K + A+  R+ A++AR+L  + K  LD ++LPGKLADCSE+DP
Sbjct: 362 LAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 421

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+F+VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A  DK+ S+ ++  LI ALG
Sbjct: 422 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 481

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG D  D+ KLRYHK+IIM DADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY
Sbjct: 482 VGIGNDI-DLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            IT+GK ++Y  +E+ L+   + +    +++ F     + ++      +D A +I   ++
Sbjct: 541 KITKGKQVRYAYNEKELQKI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 599

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                  +      +   V       E N      L
Sbjct: 600 IEDAVMAEEIFTILMGDRVEPRREFIEKNAKYVRNL 635



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 71/134 (52%), Gaps = 3/134 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  I       L  I  G +++       L  I    
Sbjct: 506 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNEKELQKILQE- 563

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            K   +QR+KGLGEMNA +LWETT++P  R LLRV+I DA  A+++F+ LMGD VEPRRE
Sbjct: 564 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVEIEDAVMAEEIFTILMGDRVEPRRE 623

Query: 791 FIQENSLPS-ALDI 803
           FI++N+     LDI
Sbjct: 624 FIEKNAKYVRNLDI 637


>gi|296330042|ref|ZP_06872526.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672704|ref|YP_003864375.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153081|gb|EFG93946.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410947|gb|ADM36065.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 638

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/588 (49%), Positives = 412/588 (70%), Gaps = 5/588 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q +SYD + IQ+L+GL+AV+KRP MYIG T+   GLHH+++E++DN+IDE+L GY   
Sbjct: 2   EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCTD 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I + +  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF+   YKVSGGLHGV
Sbjct: 61  INIQIEKDNSITVIDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L + + R+G I+  ++  G+  + L + G   + TGT   F+P  +IF+
Sbjct: 121 GASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEIIGETDH-TGTTTHFVPDPEIFT 179

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ 
Sbjct: 180 ETTVYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEV 239

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  
Sbjct: 240 VHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIND 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  + 
Sbjct: 300 YARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSA 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP
Sbjct: 360 ALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG
Sbjct: 420 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M  +I NG++YI +PPLY
Sbjct: 480 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            + +GK ++Y  +++ LED L     + +         G ++   L  
Sbjct: 539 KVQQGKRVEYAYNDKELEDLLKTLPQTPKPGLQRYKGLGEMNATQLWE 586



 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 131/332 (39%), Gaps = 37/332 (11%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGF----------------LYIIKPPLYGITRGK 548
           D ++ G  +R  L      + P     G                 L+      + +    
Sbjct: 311 DPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAALETFMLENPD 370

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
           + + + D+  +       +          S   IS  +L   + D    D  I + Y   
Sbjct: 371 AAKKIVDKGLMAARARMAAKKARELTRRKSALEIS--NLPGKLADCSSKDPSISELYIVE 428

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDI 662
             +    A      + ++   +   + +    RL+ I   +E          G   + ++
Sbjct: 429 GDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNL 488

Query: 663 LVKRIARGVQ-EQFVLEGSSIFS----FGSKYKR-IFSNRIEENYLTILSLICNGDKIKI 716
              R  + V      ++G+ I +    F  +Y R I  N         L  +  G +++ 
Sbjct: 489 EKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEY 548

Query: 717 ----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
                    LL T+    + G+  QRYKGLGEMNA+QLWETT++P +R+LL+V + DA  
Sbjct: 549 AYNDKELEDLLKTLPQTPKPGL--QRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMD 606

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD+ F  LMGD+VEPRR FI+ N+     LDI
Sbjct: 607 ADETFEMLMGDKVEPRRNFIEANARYVKNLDI 638


>gi|16077074|ref|NP_387887.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307815|ref|ZP_03589662.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312137|ref|ZP_03593942.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317070|ref|ZP_03598364.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321333|ref|ZP_03602627.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321313673|ref|YP_004205960.1| DNA gyrase subunit B [Bacillus subtilis BSn5]
 gi|121887|sp|P05652|GYRB_BACSU RecName: Full=DNA gyrase subunit B
 gi|40018|emb|CAA26221.1| unnamed protein product [Bacillus subtilis]
 gi|467396|dbj|BAA05242.1| B subunit of DNA gyrase [Bacillus subtilis]
 gi|2632273|emb|CAB11782.1| DNA gyrase (subunit B) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482375|dbj|BAI83450.1| DNA gyrase subunit B [Bacillus subtilis subsp. natto BEST195]
 gi|320019947|gb|ADV94933.1| DNA gyrase subunit B [Bacillus subtilis BSn5]
          Length = 638

 Score =  643 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/588 (49%), Positives = 411/588 (69%), Gaps = 5/588 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q +SYD + IQ+L+GL+AV+KRP MYIG T+   GLHH+++E++DN+IDE+L GY   
Sbjct: 2   EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCTD 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I + +  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF+   YKVSGGLHGV
Sbjct: 61  INIQIEKDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L + + R+G I+  ++  G+    L + G   + TGT   F+P  +IF 
Sbjct: 121 GASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TGTTTHFVPDPEIFS 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ 
Sbjct: 180 ETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEV 239

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  
Sbjct: 240 VHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIND 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  + 
Sbjct: 300 YARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFST 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP
Sbjct: 360 AMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG
Sbjct: 420 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M  +I NG++YI +PPLY
Sbjct: 480 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            + +GK ++Y  +++ LE+ L     + +         G ++   L  
Sbjct: 539 KVQQGKRVEYAYNDKELEELLKTLPQTPKPGLQRYKGLGEMNATQLWE 586



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 10/202 (4%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 442 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 499

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSL 722
               V    +      F +    + I +  +       L  +  G +++          L
Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMRQIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKELEEL 558

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L T+    + G+  QRYKGLGEMNA+QLWETT++P +R+LL+V + DA  AD+ F  LMG
Sbjct: 559 LKTLPQTPKPGL--QRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMG 616

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRR FI+ N+     LDI
Sbjct: 617 DKVEPRRNFIEANARYVKNLDI 638


>gi|254478916|ref|ZP_05092278.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035138|gb|EEB75850.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 654

 Score =  643 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/584 (53%), Positives = 415/584 (71%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++ +Y A  IQIL+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I 
Sbjct: 24  KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 82

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D+GRGIPTD+H + G  A EV +T LHAGGKFN  +YKVSGGLHGVGV
Sbjct: 83  VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 142

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L++ +K+ G ++   +  G+   PL V G    +TGT +TF P  +IF   
Sbjct: 143 SVVNALSERLEVIVKQRGKVFRQVYERGVPKTPLEVIGETE-ETGTIITFKPDKEIFEEI 201

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YD L  RLREL+FLN  + I LID+R  +       Y+GG+ AFV YL+R+K+ L +
Sbjct: 202 VFDYDILAQRLRELAFLNKGINIKLIDERDGKE--EVFNYEGGLIAFVKYLNRNKEVLHE 259

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++    +  +++ M++ND Y+EN+  F NNI  K+GGTHL G +SALT+ I  Y +
Sbjct: 260 EPIYMEAKNTDYEVEVCMQYNDSYNENIYSFANNIDTKEGGTHLIGFKSALTKVINDYAK 319

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K  ++++ G+D REG T+++S+K+ +P+F  QTK +L + E+RS+VE  V + LS
Sbjct: 320 KYGMIKDGEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTRLGNPEMRSIVEGVVTEKLS 379

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           A+LEE+P  A+IIV+K L A+  R+AAR+AR+LTRRK  L+  +LPGKLADCSE+DP K 
Sbjct: 380 AYLEENPSVARIIVEKALQAARAREAARKARELTRRKSALENTALPGKLADCSEKDPSKC 439

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAK GR+   QAILPLRGKILNVE+AR DK+LS++EI ++ITALGTGI
Sbjct: 440 ELFIVEGDSAGGSAKAGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRSIITALGTGI 499

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D FDI+KLRYHK+IIMTDADVDG+HIRTLLLTFFFR M  LI NG +YI +PPLY IT
Sbjct: 500 GED-FDISKLRYHKVIIMTDADVDGSHIRTLLLTFFFRFMKPLIENGHIYIAQPPLYKIT 558

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +GK + Y   +  L+  L        +       G ++ + L  
Sbjct: 559 KGKKVYYAYSDRELDKILSEIGRENIVVQRYKGLGEMNADQLWE 602



 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++ + +  +     + +  S      ++      V    +    
Sbjct: 471 ILNVEKARLDKILSNEEIRSIITALGTGIGEDFDISKLRYHKVIIMTDADVDGSHIRTLL 530

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I +  I      +  +              L   +  IGR+ I +QRYK
Sbjct: 531 LTFFFRFMKPLIENGHIYIAQPPLYKITKGKKVYYAYSDRELDKILSEIGRENIVVQRYK 590

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLWETT++P+ R++L+V + DA  AD++F+ LMGD+VEPRREFI++ +    
Sbjct: 591 GLGEMNADQLWETTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 650

Query: 800 ALDI 803
            LDI
Sbjct: 651 NLDI 654


>gi|291532646|emb|CBL05759.1| DNA gyrase subunit B [Megamonas hypermegale ART12/1]
          Length = 665

 Score =  643 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/583 (52%), Positives = 420/583 (72%), Gaps = 4/583 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A+ IQIL+GL+AV+KRP MYIG T    GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 35  EGDYGANQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSIDEALAGYCTHIEV 93

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S TV+DNGRGIP D+H E G  A EV++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 94  TIHKDNSITVTDNGRGIPVDMH-ESGKPAVEVVLTVLHAGGKFGGSGYKVSGGLHGVGVS 152

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ +++++KR+G I+E++F  G+   PL V G   ++TGT V F+P ++IF    
Sbjct: 153 VVNALSTNMEVKVKRDGKIHEITFEKGVTKEPLKVVGQT-DETGTLVHFVPDAEIFDETV 211

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YDTL+HRLRELSFLN  + I L D+R  E R+ T +++GGI +FV +L+R+K+ +   
Sbjct: 212 YDYDTLRHRLRELSFLNRGITIILTDERPEEVRQETFYFEGGISSFVEHLNRNKEVINPE 271

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+   G++D   +++A+++N  Y EN+  F NNI  ++GGTHL+G +SALTR    +  +
Sbjct: 272 PVYFNGTKDTTVVEIALQYNTSYSENIYSFVNNINTEEGGTHLAGFKSALTRAANDFARR 331

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K ++ +++G+D REG T V+SIK+ +P+F  QTK KL +SEVR +V+S V++GLS 
Sbjct: 332 QGIIKNNEDNLVGEDIREGLTCVISIKLREPQFEGQTKTKLGNSEVRGIVDSIVSEGLSE 391

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+ +K I++K + AS  R+AAR+AR+LTRRK  L+++SLPGKLADCS +DP+++E
Sbjct: 392 YFEENPVISKKIIEKSIMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPEQAE 451

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L+++EI T+ITA G+GIG
Sbjct: 452 IYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILNNEEIRTMITAFGSGIG 511

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            + FDI K RY KIIIMTDADVDGAHIRTLLLTFF+R M  LI NG +YI +PPLY I +
Sbjct: 512 SE-FDITKRRYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIENGHVYIAQPPLYQIRK 570

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           G+S  Y   +E L   L                G ++   L  
Sbjct: 571 GRSHWYTYSDEELAQKLDEIGRDGITVQRYKGLGEMNPEQLWE 613



 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/177 (34%), Positives = 94/177 (53%), Gaps = 10/177 (5%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---VQEQFVLEGSSIFS----FGSK 688
           ++L   LN    ++  +  GS   S+  + +   G   +     ++G+ I +    F  +
Sbjct: 488 ARLDKILNNEEIRTMITAFGSGIGSEFDITKRRYGKIIIMTDADVDGAHIRTLLLTFFYR 547

Query: 689 YKR-IFSNRIEENYLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGISMQRYKGLGEMN 746
           Y R +  N         L  I  G           L   +  IGR GI++QRYKGLGEMN
Sbjct: 548 YMRPLIENGHVYIAQPPLYQIRKGRSHWYTYSDEELAQKLDEIGRDGITVQRYKGLGEMN 607

Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-LPSALD 802
             QLWETT++P+ R++L+V + +A +AD +F+ LMGD+VEPRR FI+E++ L   LD
Sbjct: 608 PEQLWETTMDPEKRTVLQVHLREAEEADSIFTILMGDKVEPRRRFIEEHANLVRNLD 664


>gi|167629176|ref|YP_001679675.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1]
 gi|167591916|gb|ABZ83664.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1]
          Length = 641

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/594 (49%), Positives = 407/594 (68%), Gaps = 10/594 (1%)

Query: 1   MSDNIQ-----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++         SSYDA  IQ+L+GL+AV++RP MYIG T    GLHH++YE++DN+IDE
Sbjct: 1   MAEQDTWTVSGASSYDASQIQVLEGLEAVRRRPGMYIGSTSA-RGLHHLVYEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L GY + I V ++ D S  V DNGRGIP D+H + G  A EV +T LHAGGKF  + YK
Sbjct: 60  ALAGYCNRIDVIIHDDNSIEVIDNGRGIPVDIHPKMGKPAVEVALTVLHAGGKFGGEGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG+SVVNALS  L++ ++R G I+E  +  G+  + L V G +  +TGT + F
Sbjct: 120 VSGGLHGVGLSVVNALSEKLRVTVRRNGKIHEQHYERGVATSELRVVGQSK-ETGTTIYF 178

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P   IF   +++YDTL HRLRELSFLN  V+I+L DKRS +       + GGI  FV +
Sbjct: 179 KPDPQIFDELEYSYDTLSHRLRELSFLNRGVRITLTDKRSGQES--VFAHSGGIVDFVKF 236

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+R+K  +    I  Q  +D + +++A+++NDGY EN+  + NNI  ++GGTH +G ++A
Sbjct: 237 LNRNKDVIHNEVIYFQTEKDGVHVEVALQYNDGYVENLFSYANNINTQEGGTHEAGFKTA 296

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +  Y  +    K ++ ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEVR +
Sbjct: 297 LTRVVNEYARRLNQLKDNENNLSGEDIREGITAVISVKVREPQFEGQTKTKLGNSEVRGI 356

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           ++S V +G+  +LEEHP  AK I++K + A   R+AAR+AR+LTRRK  L+  SLPGKLA
Sbjct: 357 IDSCVTEGVGTYLEEHPSIAKRIIEKAIGAMRAREAARKARELTRRKTALESTSLPGKLA 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS +DP   EL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+LS++EI 
Sbjct: 417 DCSFKDPSLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKVLSNEEIR 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            +ITA+GTGIG+D FD++K RYH+I +MTDADVDG+HIRTLLLTFF+R M  LI NG++Y
Sbjct: 477 AIITAMGTGIGED-FDLSKARYHRICLMTDADVDGSHIRTLLLTFFYRHMKPLIENGYVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I +PPLY + + + ++Y   +  L  YL                G ++   L  
Sbjct: 536 IAQPPLYQVKKNRDVRYFYHDNELNRYLEKTGRDGVTIQRYKGLGEMNPEQLWE 589



 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 8/154 (5%)

Query: 658 NNSDILVKRIARG-VQEQFVLEGSSIFSFGSKY-KRIFSNRIEENYLTILS-----LICN 710
            + D+   R  R  +     ++GS I +    +  R     IE  Y+ I       +  N
Sbjct: 488 EDFDLSKARYHRICLMTDADVDGSHIRTLLLTFFYRHMKPLIENGYVYIAQPPLYQVKKN 547

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
            D         L   +   GR G+++QRYKGLGEMN  QLWETT++P  R++L+V + DA
Sbjct: 548 RDVRYFYHDNELNRYLEKTGRDGVTIQRYKGLGEMNPEQLWETTMDPKNRTILQVSLEDA 607

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ++A+ +F+ LMGD VEPRR+FIQ ++     LDI
Sbjct: 608 AEAELIFTTLMGDRVEPRRDFIQSHAKDVRNLDI 641


>gi|91772465|ref|YP_565157.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242]
 gi|91711480|gb|ABE51407.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242]
          Length = 632

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/589 (50%), Positives = 407/589 (69%), Gaps = 9/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD      YDA  IQ+L+GL+AV+KRPSMYIG  D   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSD-----DYDATHIQVLEGLEAVRKRPSMYIGSVD-TRGLHHLVYEVVDNSIDEALAGF 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V++N DGS TV D+GRGIP D H +   SA EV++T LHAGGKF++ +YKVSGGL
Sbjct: 55  CKNIDVSINADGSVTVVDDGRGIPVDNHPKYKKSALEVVLTVLHAGGKFDKSNYKVSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+++ +KR+G +Y   +  G   + + V G A   TGT+ TF+P S 
Sbjct: 115 HGVGVSVVNALSEWMEVEVKRDGKLYYQRYERGAPTSDVTVIGDAK-GTGTKSTFMPDSQ 173

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F+Y TL  RLREL+FLN  ++I++ D R  E  +    Y+GGI +FV +L++ +
Sbjct: 174 IFETTEFSYGTLITRLRELAFLNKGIRITITDSREEELEQDVFEYEGGIISFVEHLNQSR 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L ++PI  +  ++   +++AM++ D Y E V  F NNI   +GGTHL G ++ALTR  
Sbjct: 234 TALHKTPIYFEREKEGTIVEIAMQYTDSYGEYVYSFANNINTYEGGTHLIGFKTALTRVA 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y++K+    K    + G+D REG  +++S+K+ +P+F  QTK KL +SE++ +V+S V
Sbjct: 294 NDYIKKNNV-VKGDEKLTGEDIREGLAAIISVKLTEPQFEGQTKTKLGNSELKGIVDSMV 352

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++GLS ++EE+P  A II +K LDA   R+AA++AR+LTRRK  L+I +LPGKLADCSE+
Sbjct: 353 SEGLSEYMEENPKVAVIIFQKALDARRAREAAKKARELTRRKSALEIGTLPGKLADCSEK 412

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQGR+R  QAILP RGKI+NVE+AR  K+L + E+ +LITA
Sbjct: 413 DPSVSEVYLVEGDSAGGSAKQGRNRRFQAILPFRGKIINVEKARLSKVLKNNEVLSLITA 472

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGI  + ++I K RYHK+IIMTDADVDGAHIRTL+LTFFFR M  LI  G++YI +PP
Sbjct: 473 MGTGI-AEDYNIEKARYHKVIIMTDADVDGAHIRTLILTFFFRYMAPLIDAGYVYIAQPP 531

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I +GK+  YV  +  L   L     +          G ++   L  
Sbjct: 532 LYRIKKGKAEHYVYSDRELAAKLEEIGENNTYVQRYKGLGEMNPEQLWE 580



 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 1/153 (0%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           + ++        ++      V    +      F F      I +  +      +  +   
Sbjct: 479 EDYNIEKARYHKVIIMTDADVDGAHIRTLILTFFFRYMAPLIDAGYVYIAQPPLYRIKKG 538

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             +  +     L   +  IG     +QRYKGLGEMN  QLWETT+NPDTR+LL+V + DA
Sbjct: 539 KAEHYVYSDRELAAKLEEIGENNTYVQRYKGLGEMNPEQLWETTMNPDTRTLLQVTMDDA 598

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLP-SALD 802
           + AD++FS LMGDEV PR+ FIQ+ +     LD
Sbjct: 599 AAADEMFSVLMGDEVAPRKAFIQKYAKEVVNLD 631


>gi|20806552|ref|NP_621723.1| DNA gyrase subunit B [Thermoanaerobacter tengcongensis MB4]
 gi|20514990|gb|AAM23327.1| DNA gyrase (topoisomerase II) B subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 654

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/584 (53%), Positives = 414/584 (70%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++ +Y A  IQIL+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I 
Sbjct: 24  KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 82

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D+GRGIPTD+H + G  A EV +T LHAGGKFN  +YKVSGGLHGVGV
Sbjct: 83  VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 142

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L++ +K+ G ++   +  G+   PL V G    +TGT +TF P  +IF   
Sbjct: 143 SVVNALSERLEVIVKQRGKVFRQVYERGVPKTPLEVIGETE-ETGTIITFKPDKEIFEEI 201

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YD L  RLREL+FLN  + I LID+R  +       Y+GG+ AFV YL+R+K+ L +
Sbjct: 202 VFDYDILAQRLRELAFLNKGINIKLIDERDGKE--EVFNYEGGLIAFVKYLNRNKEVLHE 259

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++    +  +++ M++ND Y+EN+  F NNI  K+GGTHL G +SALT+ I  Y +
Sbjct: 260 EPIYMEAKNTDYEVEVCMQYNDSYNENIYSFANNIDTKEGGTHLIGFKSALTKVINDYAK 319

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K  ++++ G+D REG T+++S+K+ +P+F  QTK +L + E+RS+VE  V + LS
Sbjct: 320 KYGMIKDGEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTRLGNPEMRSIVEGVVTEKLS 379

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           A+LEE+P  A+IIV+K L A+  R+AAR+AR+LTRRK  L+  +LPGKLADCSE+DP K 
Sbjct: 380 AYLEENPSVARIIVEKALQAARAREAARKARELTRRKSALENTALPGKLADCSEKDPSKC 439

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAK GR+   QAILPLRGKILNVE+AR DK+ S++EI ++ITALGTGI
Sbjct: 440 ELFIVEGDSAGGSAKAGRNSRFQAILPLRGKILNVEKARLDKIFSNEEIRSIITALGTGI 499

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D FDI+KLRYHK+IIMTDADVDG+HIRTLLLTFFFR M  LI NG +YI +PPLY IT
Sbjct: 500 GED-FDISKLRYHKVIIMTDADVDGSHIRTLLLTFFFRFMKPLIENGHIYIAQPPLYKIT 558

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +GK + Y   +  L+  L        +       G ++ + L  
Sbjct: 559 KGKKVYYAYSDRELDKILSEIGRENIVVQRYKGLGEMNADQLWE 602



 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++ + +  +     + +  S      ++      V    +    
Sbjct: 471 ILNVEKARLDKIFSNEEIRSIITALGTGIGEDFDISKLRYHKVIIMTDADVDGSHIRTLL 530

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I +  I      +  +              L   +  IGR+ I +QRYK
Sbjct: 531 LTFFFRFMKPLIENGHIYIAQPPLYKITKGKKVYYAYSDRELDKILSEIGRENIVVQRYK 590

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLWETT++P+ R++L+V + DA  AD++F+ LMGD+VEPRREFI++ +    
Sbjct: 591 GLGEMNADQLWETTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 650

Query: 800 ALDI 803
            LDI
Sbjct: 651 NLDI 654


>gi|308171897|ref|YP_003918602.1| DNA gyrase subunit B [Bacillus amyloliquefaciens DSM 7]
 gi|307604761|emb|CBI41132.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens DSM 7]
 gi|328909965|gb|AEB61561.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens LL3]
          Length = 640

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/591 (49%), Positives = 412/591 (69%), Gaps = 5/591 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q +SYD + IQ+L+GL+AV+KRP MYIG T+   GLHH+++E++DN+IDE+L GY
Sbjct: 1   MAMEQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + +  D S TV DNGRGIP  + ++ G  A EVIMT LHAGGKF+   YKVSGGL
Sbjct: 60  CTDINIEIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +
Sbjct: 120 HGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R 
Sbjct: 179 IFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRS 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR 
Sbjct: 239 KEVIHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRV 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  +    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++ 
Sbjct: 299 INDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTL 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            +  L  +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS 
Sbjct: 359 FSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++IT
Sbjct: 419 KDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMIT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M  +I NG++YI +P
Sbjct: 479 ALGTGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PLY + +GK ++Y  +++ L++ L     S +         G ++   L  
Sbjct: 538 PLYKVQQGKRVEYAYNDKQLDELLKELPQSPKPGLQRYKGLGEMNATQLWE 588



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 10/202 (4%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 444 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 501

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSL 722
               V    +      F +    + I +  +       L  +  G +++          L
Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMREIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKQLDEL 560

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L  +    + G+  QRYKGLGEMNA+QLWETT++P TR+LL+V + DA  AD+ F  LMG
Sbjct: 561 LKELPQSPKPGL--QRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEMLMG 618

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRR FI+ N+     LDI
Sbjct: 619 DKVEPRRNFIEANARYVKNLDI 640


>gi|332971209|gb|EGK10172.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Desmospora sp. 8437]
          Length = 641

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/643 (46%), Positives = 422/643 (65%), Gaps = 11/643 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            ++  +YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE+L G  D 
Sbjct: 6   TVEKKNYDESQIQVLEGLEAVRKRPGMYIGATSS-RGLHHLVWEVVDNSIDEALAGRCDT 64

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+N D S TV DNGRGIP  +  + G  A EV+MT LHAGGKF+ + YK SGGLHGV
Sbjct: 65  IQVTVNEDNSVTVEDNGRGIPVGIQPKVGRPAVEVVMTVLHAGGKFDNEGYKFSGGLHGV 124

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS WL++++KREG I+   +  G+ ++ L VTG    +TGT +TF P  +IF+
Sbjct: 125 GVSVVNALSEWLEVQVKREGKIHVQRYRKGVPESDLQVTGKTK-ETGTRITFKPDPEIFT 183

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               ++Y+ LQ+RLREL+FLN  ++I L D+R  E +     Y GGI +FV +L+++++ 
Sbjct: 184 ETTEYDYEILQNRLRELAFLNQGLRIMLSDER-GEGKSNEFKYDGGIRSFVEHLNKNRES 242

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L Q PI I+G ++ + + +A+++NDG+  N+  + NNI   +GGTH +G +SALTR I  
Sbjct: 243 LHQPPIFIEGEKEELVVQIALQYNDGFSSNLYSYANNIHTHEGGTHEAGFKSALTRVIND 302

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +    K++  ++ GDD REG T+++SIK+PDP+F  QTK KL +SE R+V ES   +
Sbjct: 303 YARRHNLLKENDNNLSGDDTREGLTAIISIKIPDPQFEGQTKTKLGNSEARTVTESIFAE 362

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
              A+LEE+P  +K ++ K + A+  R+AAR+AR+LTRRK  L+++SLPGKLADC+ R  
Sbjct: 363 QFLAFLEENPAVSKKVINKAVMAARAREAARKARELTRRKNALEVSSLPGKLADCTSRKA 422

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           + SEL+LVEGDSAGG+AKQGR R  QAILPLRGKILNVE+AR DK LS++EI T+ TALG
Sbjct: 423 EISELYLVEGDSAGGTAKQGRDRMFQAILPLRGKILNVEKARLDKALSNEEIRTITTALG 482

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG+D F + K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +PPLY
Sbjct: 483 TGIGED-FQLEKARYHKIMIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLY 541

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            IT+GK + Y  D+   +  +       ++        G ++   L         +D   
Sbjct: 542 KITQGKKVLYAFDDREKDRIVSELEDKGKVELQRYKGLGEMTATQLWET-----TMDPES 596

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +       +  ++   +      E  +     +        N 
Sbjct: 597 RTLLQVSLEDALDADQVFETLMGEKVEPRREFIQEYAKQVRNL 639



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 8/129 (6%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-----LLDTIFSIGRKGIS 735
            + +F  +Y R                     K  +          ++  +   G+  + 
Sbjct: 515 LLLTFFYRYMRPLIEAGYVYIAQPPLYKITQGKKVLYAFDDREKDRIVSELEDKGK--VE 572

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM A+QLWETT++P++R+LL+V + DA  AD +F  LMG++VEPRREFIQE 
Sbjct: 573 LQRYKGLGEMTATQLWETTMDPESRTLLQVSLEDALDADQVFETLMGEKVEPRREFIQEY 632

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 633 AKQVRNLDI 641


>gi|224994123|dbj|BAH28874.1| DNA gyrase subunit B [Psychrobacter nivimaris]
          Length = 740

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/743 (44%), Positives = 455/743 (61%), Gaps = 49/743 (6%)

Query: 31  YIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE 90
           YIGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H E
Sbjct: 1   YIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVDIHPE 60

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y  ++
Sbjct: 61  EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLEMNIWREGYHYHQTY 120

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL 210
            +G+ D+ +     A + TGT++ F PSSD+F+   F YD L  RLRELSFLNS V+I L
Sbjct: 121 TDGVPDSDIQQ-MEATDQTGTQIRFYPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIVL 179

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D+R  +  E    +KGG+  FVSY++  K  + +         D IS+++A++W D Y+
Sbjct: 180 TDERIDKRHE--FEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGISVEVALQWTDTYN 237

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E VLCFTNNIPQKDGGTHLSG RSALTR + SY+++    KK+K +  GDD REG T+++
Sbjct: 238 EKVLCFTNNIPQKDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAATGDDAREGLTAIV 297

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +L E+P   K I  K+++A+  RD
Sbjct: 298 SVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIANKIMEAARARD 357

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAI
Sbjct: 358 AARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRKTQAI 417

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG
Sbjct: 418 LPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDG 477

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           +HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ ++  
Sbjct: 478 SHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDN 537

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQ 628
                      I+   L   ++D  +   +            ++    +   + +   D+
Sbjct: 538 TKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSTDMTYDE 597

Query: 629 EINVSLASKLANRLNFIAEKSEKS------------------------------WHGSIN 658
                  + +  +L+                                         G  +
Sbjct: 598 SAMQDWKTAMQTKLDHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMTPVVGTEEGEAS 657

Query: 659 NSD---------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           +S+           V      +   ++L+ S I S         S+       +   +  
Sbjct: 658 DSEALSTKAQWLPRVTVYVHQLAHHYLLDASFINSGEYSKLLRLSSEWNTLLESDAFIRR 717

Query: 710 NG-----DKIKITGPCSLLDTIF 727
                    I +     L   + 
Sbjct: 718 EASAGTTKDIPVRDFDYLWXQMM 740


>gi|304437923|ref|ZP_07397869.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369063|gb|EFM22742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 685

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/591 (50%), Positives = 410/591 (69%), Gaps = 6/591 (1%)

Query: 1   MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M D +   ++ Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH++YEV+DN+IDE+L 
Sbjct: 47  MGDEVTAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALA 105

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D + VT++ D S TV+DNGRGIP D+H E G+ A EV++T LHAGGKF    YKVSG
Sbjct: 106 GYCDTVGVTIHKDNSITVTDNGRGIPVDMH-ESGMPAVEVVLTVLHAGGKFGGDGYKVSG 164

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ + + ++R+G I+ +SF  G+    L   G   + TGT V F+P 
Sbjct: 165 GLHGVGVSVVNALSTEMDVEVRRDGKIFAISFSRGVTTTKLHEIG-TSDTTGTRVHFVPD 223

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +IF+V  +++DTL+HRLREL+FLN  + I+L D+R  E R  T  + GGI +FVS+L+R
Sbjct: 224 PEIFTVTTYSFDTLKHRLRELAFLNHGITITLTDERGTEVRSETFHFDGGIRSFVSHLNR 283

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ + + PI   G +D+I +++AM++ND Y EN+  F NNI  ++GGTHL+G + ALTR
Sbjct: 284 KKETINEEPIYFNGVKDDIVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTR 343

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
               +  +    K    ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEVR +V+S
Sbjct: 344 AANDFARRLNVLKDKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDS 403

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V +GL+ + EE+P   K ++ K L AS  R+AAR+AR+LTRRK  L+++SLPGKLADCS
Sbjct: 404 IVTEGLTEYFEENPAVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKLADCS 463

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+ ++ EI T+I
Sbjct: 464 VKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMI 523

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG++ FD+ K RY KIIIMTDADVDGAHIRTLLLTFF+R M  L+ +G +YI +
Sbjct: 524 TAFGTGIGEE-FDLAKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQ 582

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY I + K   Y   ++     L                G ++   L  
Sbjct: 583 PPLYQIRKDKKHFYTYSDDEQAKKLDEIGRDGVTIQRYKGLGEMNPEQLWE 633



 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +        + +  +      ++      V    +   +
Sbjct: 502 ILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLAKRRYSKIIIMTDADVDGAHI--RT 559

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKGISMQR 738
            + +F  +Y +   +                DK              +  IGR G+++QR
Sbjct: 560 LLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDDEQAKKLDEIGRDGVTIQR 619

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT+NP+ R++L+V   DA  AD+LF+ LMGD+VEPRR+FI+EN+  
Sbjct: 620 YKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGDKVEPRRQFIEENAKL 679

Query: 799 S-ALDI 803
              LDI
Sbjct: 680 VRNLDI 685


>gi|289523899|ref|ZP_06440753.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502555|gb|EFD23719.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 645

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/641 (48%), Positives = 422/641 (65%), Gaps = 8/641 (1%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M   + N   Y A+ IQIL+GL+AV++RPSMYIGDT G  GLHH++YEV+DNAIDE++ G
Sbjct: 9   MKTTVANLKEYTANDIQILEGLEAVRRRPSMYIGDT-GIRGLHHLVYEVVDNAIDEAMAG 67

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D ++V +  DGS +V DNGRGIP D H +    AAEV++T LHAGGKF+ K+Y+VSGG
Sbjct: 68  YCDQVSVIVYPDGSVSVEDNGRGIPVDTHPKVNKPAAEVVLTILHAGGKFDNKAYQVSGG 127

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS+WL+L I R+G  +   +  G+    L   G A + TGT+V FLP  
Sbjct: 128 LHGVGVSVVNALSTWLELIIWRDGMEWHQRYSRGVPQCELTPVGKA-DRTGTKVHFLPDD 186

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF  +DF++D L  RLRE++FL   ++I L D R+ +   +   Y GG+ +FV YL+R 
Sbjct: 187 TIFEEKDFSFDVLSSRLREIAFLVPGLKIDLKDLRNNKS--VAFKYDGGVISFVEYLNRD 244

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K PL + PI I+G +D++ +++A+++ND + E V  F N I   +GGTH+ G R+ALTR 
Sbjct: 245 KNPLFKEPIYIKGEKDDVLVEVALQYNDSFQERVFAFANLIHTVEGGTHVVGFRTALTRA 304

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +     +    K    ++ GDD +EG T+++S+K+ +P+F  QTK KL +S+VR +V+S 
Sbjct: 305 VNEMARRQKLLKDKDANLSGDDLKEGLTAIISVKLKEPQFEGQTKTKLGNSDVRGIVDSI 364

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V DGL A+LEE P   + IV+K + A   RDAA++AR+L RRK       LPGKLADCS 
Sbjct: 365 VYDGLMAFLEEKPDCLRPIVEKAIKARQARDAAKKARELVRRKSAFGGLDLPGKLADCSS 424

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP++ EL++VEGDSAGGSAKQGR+R  QAILPLRGKILNVE+AR DK+LS+ EI T+I 
Sbjct: 425 KDPEECELYIVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKARLDKVLSNAEIRTIIQ 484

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D FD+NKLRYH++IIMTDADVDGAHIRTLLL FF+R MP +I  G LYI +P
Sbjct: 485 ALGCGIGED-FDVNKLRYHRVIIMTDADVDGAHIRTLLLAFFYRFMPGIIEGGHLYIAQP 543

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY +  GKS  Y   ++ L +     +  +         G ++   L     D    ++
Sbjct: 544 PLYRVQAGKSEYYCYSDKELRNMADKLANKKISVQRYKGLGEMNPEQLWKTTMDPN--ER 601

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           ++K           E   I      E  +E   S A+++ N
Sbjct: 602 ILKRVDVEDALAADEYFTILMGDKVEPRREFIESHANEVRN 642



 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 102/262 (38%), Gaps = 2/262 (0%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  +D       L+ +  +             S  D        ++ D     
Sbjct: 384 VEKAIKARQARDAAKKARELVRRKSAFGGLDLPGKLADCSSKDPEECELYIVEGDSAGGS 443

Query: 604 FYPNHDKTFIEQAVISG-VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                ++TF     + G + N E  +   V   +++   +  +     + +  +      
Sbjct: 444 AKQGRNRTFQAILPLRGKILNVEKARLDKVLSNAEIRTIIQALGCGIGEDFDVNKLRYHR 503

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           ++      V    +      F +      I    +      +  +     +        L
Sbjct: 504 VIIMTDADVDGAHIRTLLLAFFYRFMPGIIEGGHLYIAQPPLYRVQAGKSEYYCYSDKEL 563

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
            +    +  K IS+QRYKGLGEMN  QLW+TT++P+ R L RV + DA  AD+ F+ LMG
Sbjct: 564 RNMADKLANKKISVQRYKGLGEMNPEQLWKTTMDPNERILKRVDVEDALAADEYFTILMG 623

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRREFI+ ++     LD+
Sbjct: 624 DKVEPRREFIESHANEVRNLDV 645


>gi|238926604|ref|ZP_04658364.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531]
 gi|238885550|gb|EEQ49188.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531]
          Length = 685

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/591 (50%), Positives = 410/591 (69%), Gaps = 6/591 (1%)

Query: 1   MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M D +   ++ Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH++YEV+DN+IDE+L 
Sbjct: 47  MGDEVTAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALA 105

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D + VT++ D S TV+DNGRGIP D+H E G+ A EV++T LHAGGKF    YKVSG
Sbjct: 106 GYCDTVGVTIHKDNSITVTDNGRGIPVDMH-ESGMPAVEVVLTVLHAGGKFGGDGYKVSG 164

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ + + ++R+G I+ +SF  G+    L   G   + TGT V F+P 
Sbjct: 165 GLHGVGVSVVNALSTEMDVEVRRDGKIFAISFSRGVTTTKLHEIG-TSDTTGTRVHFVPD 223

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +IF+V  +++DTL+HRLREL+FLN  + I+L D+R  E R  T  + GGI +FVS+L+R
Sbjct: 224 PEIFTVTTYSFDTLKHRLRELAFLNHGITITLTDERGAEVRSETFHFDGGIRSFVSHLNR 283

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ + + PI   G +D+  +++AM++ND Y EN+  F NNI  ++GGTHL+G + ALTR
Sbjct: 284 KKETINEEPIYFNGVKDDTVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTR 343

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
               +  +    K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEVR +V+S
Sbjct: 344 AANDFARRLNVLKEKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDS 403

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V +GL+ + EE+P   K ++ K L AS  R+AAR+AR+LTRRK  L+++SLPGKLADCS
Sbjct: 404 IVTEGLTEYFEENPAVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKLADCS 463

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+ ++ EI T+I
Sbjct: 464 VKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMI 523

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG++ FD+ K RY KIIIMTDADVDGAHIRTLLLTFF+R M  L+ +G +YI +
Sbjct: 524 TAFGTGIGEE-FDLAKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQ 582

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY I + K   Y   ++     L                G ++   L  
Sbjct: 583 PPLYQIRKDKKHFYTYSDDEQAKKLDELGRDGVTIQRYKGLGEMNPEQLWE 633



 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +        + +  +      ++      V    +   +
Sbjct: 502 ILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLAKRRYSKIIIMTDADVDGAHI--RT 559

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKGISMQR 738
            + +F  +Y +   +                DK              +  +GR G+++QR
Sbjct: 560 LLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDDEQAKKLDELGRDGVTIQR 619

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT+NP+ R++L+V   DA  AD+LF+ LMGD+VEPRR+FI+EN+  
Sbjct: 620 YKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGDKVEPRRQFIEENAKL 679

Query: 799 S-ALDI 803
              LDI
Sbjct: 680 VRNLDI 685


>gi|21228521|ref|NP_634443.1| DNA gyrase subunit B [Methanosarcina mazei Go1]
 gi|20907008|gb|AAM32115.1| DNA gyrase, subunit B [Methanosarcina mazei Go1]
          Length = 634

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/589 (51%), Positives = 403/589 (68%), Gaps = 7/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD      YDA  IQ+L+GL+AV+KRPSMYIG TD   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSDKQV---YDASHIQVLEGLEAVRKRPSMYIGSTD-GRGLHHLVYEVVDNSIDEALAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+N +GS TV DNGRGIP D H     SA EV+MT LHAGGKF++ +YKVSGGL
Sbjct: 57  CSEIDVTINPNGSVTVIDNGRGIPIDPHPVHKKSALEVVMTILHAGGKFDKNTYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W ++ + R+G  Y   +I G  ++ +   G++     T+ TF P + 
Sbjct: 117 HGVGVSVVNALSEWTEVEVSRDGKKYFQRYIRGKPESDVREIGTSDTTG-TKTTFKPDTK 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   DF YD L +RLREL+FLN  + I+L D RSPE +  T  Y GGI  FV YL++ K
Sbjct: 176 IFETTDFQYDILLNRLRELAFLNRGLIINLKDLRSPEGQAETFNYSGGIIEFVEYLNKKK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL + PI  +  RD++ +++AM++ +GY ENV  F NNI   +GGTH+ G ++ALTR  
Sbjct: 236 QPLHEKPIYFERQRDDMVVEIAMQYTNGYTENVYSFANNINTHEGGTHIIGFKTALTRVA 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y++ +    K+   + GDD REG T+++S+K+ +P+F  QTK KL +SEV+ +V+S V
Sbjct: 296 NDYIKANK-LSKEDEKLTGDDVREGLTAIISVKLMEPQFEGQTKTKLGNSEVKGIVDSLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            DGL+ + EE+P  A II+ K L A   R+AA++AR+LTRRK  L++++LPGKLADCS +
Sbjct: 355 TDGLAEYFEENPKVANIILDKALLAQRAREAAKKARELTRRKSALEVSTLPGKLADCSNK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P + E+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE++R  K+L + E+ +LITA
Sbjct: 415 NPAECEIYIVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNNEVISLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTG+  + FD+   RYHKIIIMTDADVDGAHIRTLLLT FFR M  LI  G++YI +PP
Sbjct: 475 IGTGV-SEDFDLENARYHKIIIMTDADVDGAHIRTLLLTLFFRYMRHLIDAGYVYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I +GK   Y   ++ L D L                G ++   L  
Sbjct: 534 LYKIKKGKMDYYAYSDKELADKLKELGEKGVAIQRYKGLGEMNPGQLWE 582



 Score =  190 bits (483), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++ + +  I     + +         ++      V    +    
Sbjct: 451 ILNVEKSRLAKILKNNEVISLITAIGTGVSEDFDLENARYHKIIIMTDADVDGAHIRTLL 510

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               F      I +  +      +  +              L D +  +G KG+++QRYK
Sbjct: 511 LTLFFRYMRHLIDAGYVYIAQPPLYKIKKGKMDYYAYSDKELADKLKELGEKGVAIQRYK 570

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-S 799
           GLGEMN  QLWETT++P++R+LL+V + DA +AD++F  LMGDEVEPRR FI+ ++    
Sbjct: 571 GLGEMNPGQLWETTMDPESRTLLQVTLEDAIRADEIFRVLMGDEVEPRRNFIETHAKEVV 630

Query: 800 ALDI 803
            LDI
Sbjct: 631 DLDI 634


>gi|269791748|ref|YP_003316652.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099383|gb|ACZ18370.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 636

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/641 (45%), Positives = 408/641 (63%), Gaps = 8/641 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N   S Y A  IQ+L+GL AV+KRP MYIGD  G+ GLHH++YEV+DNAIDE++ G+ D 
Sbjct: 2   NAPVSQYTAKDIQVLEGLSAVRKRPGMYIGD-QGQRGLHHLVYEVVDNAIDEAMAGFCDT 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + VT++ DGS +V DNGRGIPT++H   G  AAEV++T LHAG KF++K+Y+VSGGLHGV
Sbjct: 61  VQVTVHPDGSVSVEDNGRGIPTEMHPTMGRPAAEVVLTVLHAGAKFDKKAYQVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS WL++ I R G  +  S+  G+    L + G   +  GT+V F+P  +IFS
Sbjct: 121 GVSVVNALSEWLEVTIWRNGKEHRQSYRRGVPVTDL-IAGEDTDRRGTKVHFMPDGEIFS 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+ DTL  RLREL+FLN  V I   D R   P E  + ++GGI +FV YL+R K+ L
Sbjct: 180 TLEFSADTLIGRLRELAFLNPGVTIVFRDLRQDPPMERKLHFEGGIRSFVEYLNRGKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              P+ ++G +D + +++A+++ND Y E +  F N I   +GGTH+SG R+ALTR I   
Sbjct: 240 FSPPMVVKGEKDGVIVEVALQYNDTYLERIFAFANLINTVEGGTHVSGFRTALTRLINDQ 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K    K    +  GDD +EG T+V+S+K+ +P+F  QTK KL + +V+ +V+S V +G
Sbjct: 300 ARKEKLLKDKDPNFTGDDLKEGLTAVISVKLLEPQFEGQTKTKLGNGDVKGIVDSVVYEG 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L   LE+ P   + +V+K + A   R+AA++ARDL RRK  +    LPGKLADCS R P+
Sbjct: 360 LKVILEDQPQILRPVVEKAVKARQAREAAKKARDLVRRKSAMSGMDLPGKLADCSNRRPE 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + EL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR DK+LS+ ++ T+I ALG 
Sbjct: 420 ECELYIVEGDSAGGSAKMGRDRSFQAILPLRGKILNVEKARLDKILSNDQVRTIIQALGC 479

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+G D FD +KLRYHKI +M DADVDGAHIRTLLLT FFR MP +I NG LY+ +PPLY 
Sbjct: 480 GVG-DEFDYSKLRYHKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLYVAQPPLYR 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           +  GK++ Y   +  L++ +   S  +         G ++   L         +D   + 
Sbjct: 539 VQEGKNVHYCYSDRELKEIMQRLSGRKASVQRYKGLGEMNPEQLWET-----TMDPANRV 593

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                 +  +    +  V   ++ +     + +      N 
Sbjct: 594 IKRVEIEDAVLADELFSVLMGDAVEPRREFIEAHAKEVRNL 634



 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 2/115 (1%)

Query: 691 RIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749
           +I  N         L  +  G  +        L + +  +  +  S+QRYKGLGEMN  Q
Sbjct: 522 QIIENGHLYVAQPPLYRVQEGKNVHYCYSDRELKEIMQRLSGRKASVQRYKGLGEMNPEQ 581

Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LWETT++P  R + RV+I DA  AD+LFS LMGD VEPRREFI+ ++     LD+
Sbjct: 582 LWETTMDPANRVIKRVEIEDAVLADELFSVLMGDAVEPRREFIEAHAKEVRNLDV 636


>gi|310657321|ref|YP_003935042.1| DNA gyrase subunit b [Clostridium sticklandii DSM 519]
 gi|308824099|emb|CBH20137.1| DNA gyrase (subunit B) [Clostridium sticklandii]
          Length = 641

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/588 (50%), Positives = 401/588 (68%), Gaps = 4/588 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +N  N +Y A+ IQ+L+GLD V+KRP MYIG T G  GLHH++YEV+DNAIDE+L G+ D
Sbjct: 5   ENKVNHAYGAEQIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEVVDNAIDEALAGHCD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V+++ D   TV DNGRGIP ++H + G S  E ++T LHAGGKF    YKVSGGLHG
Sbjct: 64  KIYVSIDPDNGITVKDNGRGIPVEIHPKTGKSTVETVLTVLHAGGKFGAGGYKVSGGLHG 123

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L + +K  G IY   F  G+    L + G    + GT V F+P   +F
Sbjct: 124 VGVSVVNALSKELIVEVKINGKIYRQEFAYGVPQTELEIVGETT-ERGTCVRFMPDDAVF 182

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               + YDTL+HRLREL+FLN  + I+L DKR    +     Y GG+  FV Y++++K P
Sbjct: 183 EETQYKYDTLEHRLRELAFLNKGIHITLEDKREDLQKVKEFHYTGGLVEFVRYINKNKSP 242

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +    I  +  + + ++++AM++ D Y ENV  F NNI   +GG HL+G ++ALTR I  
Sbjct: 243 IHDDVIYFEKKQGDYTVEIAMQYTDAYVENVYSFANNINTHEGGMHLTGFKTALTRVIND 302

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +KS   K  + +++G+D REG T+V+SIK+PDP++  QTK KL + + RS VE+   D
Sbjct: 303 YAKKSNFLKSKEDNLMGEDIREGLTAVVSIKLPDPQYEGQTKTKLGNPQARSAVETISGD 362

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            ++ +L+E+P  A+IIV K L A   R+AA++AR+LTRRK VL+  SLPGKLADC+E+DP
Sbjct: 363 NITIFLDENPASARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDP 422

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            KSE++LVEGDSAGGSAKQGR R+ QAILPLRGKILNVE++R D++LSS EI  +ITA G
Sbjct: 423 VKSEIYLVEGDSAGGSAKQGRDRKTQAILPLRGKILNVEKSRLDRILSSDEIRNMITAFG 482

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  + FD  KLRYHKI+IMTDADVDGAHIRTL+LTFFFR M  LI  G++YI +PPL+
Sbjct: 483 CGI-SNEFDEEKLRYHKIVIMTDADVDGAHIRTLILTFFFRYMRPLIEKGYVYIAQPPLF 541

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            I +G+  +YV  ++ L + L     S ++        G ++   L +
Sbjct: 542 RIKKGRREEYVYSDKELNERLEEIGRSNQVELQRYKGLGEMNAEQLWD 589



 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 2/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++ N +          +         +V      V    +    
Sbjct: 457 ILNVEKSRLDRILSSDEIRNMITAFGCGISNEFDEEKLRYHKIVIMTDADVDGAHIRTLI 516

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRY 739
             F F      I    +      +  +     +  +     L + +  IGR   + +QRY
Sbjct: 517 LTFFFRYMRPLIEKGYVYIAQPPLFRIKKGRREEYVYSDKELNERLEEIGRSNQVELQRY 576

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA QLW+TT+NP TR+LLRV I DAS ADD+FS LMGD+VEPRR FIQEN+   
Sbjct: 577 KGLGEMNAEQLWDTTMNPATRTLLRVTIEDASMADDIFSMLMGDKVEPRRNFIQENAKYV 636

Query: 800 -ALDI 803
             LD+
Sbjct: 637 KNLDV 641


>gi|115607076|gb|ABJ16352.1| gyrase B [Leptospirillum ferriphilum]
          Length = 731

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/737 (40%), Positives = 440/737 (59%), Gaps = 25/737 (3%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIG T G  GLHH++YE++DN++DE+L G+   I VT++ D S TV+DNGRGIPT +
Sbjct: 1   PGMYIGST-GIDGLHHLVYELVDNSVDEALAGHCSEIHVTIHPDRSVTVADNGRGIPTGM 59

Query: 88  HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
           H E+  SAAEV++T LHAGGKFN   YKVSGGLHGVGVSVVNALS  L L I + G I+ 
Sbjct: 60  HAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHR 119

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
            ++  G  D PL V G      GT + F P   I     F++DTL HR REL+FLN  + 
Sbjct: 120 QTYHKGAPDAPLAVFGETA-QRGTIIRFWPDMTIMETDQFSFDTLSHRFRELAFLNPVLT 178

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           I L ++ +   RE T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +
Sbjct: 179 IHLKEEET--LREETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQE 236

Query: 268 GY-HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
              +E VL F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG 
Sbjct: 237 STENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGL 294

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T ++S+++P P+F  QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +
Sbjct: 295 TGIISVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTA 354

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R+AAR+A+DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R 
Sbjct: 355 QAREAARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRR 414

Query: 447 NQAILPLRGKILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
            QAILPL+GKILNVE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTD
Sbjct: 415 FQAILPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTD 474

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           ADVDGAHIRTLLLTFFFR M  LI   F+YI +PPLY ++ G+  +Y+ ++E+L+ Y++ 
Sbjct: 475 ADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIAQPPLYKVSYGRQERYLLNDEALQAYILE 534

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV---ISGVF 622
            + ++ +     +   +++ +    +   +  ++ ++          + + +        
Sbjct: 535 LACADWMFYDEQAGHWLAREEAVAKLLVLVHFEEQVRAHAQRFGNEMLLRLIGMFTETGI 594

Query: 623 NCESDQEINVSLASKLA---------NRLNFIAEKSEK--SWHGSINNSDILVKRIARGV 671
                +E    L S L           RL+   E+       H       I     + G 
Sbjct: 595 EVLKSEEAARRLVSFLTGEYPGWVAGGRLDGQVERDPVMAETHPEEEWFRIRFFTESLGY 654

Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN---GDKIKITGPCSLLDTIFS 728
           + + VL+   +    +  + +   R          ++     G++++   P  LL  + +
Sbjct: 655 ESRLVLDHYLLAQLLAGKRSLRLLRQSGLLFPGGFVLRRGAEGEEVRFRSPRELLSFLET 714

Query: 729 IGRKGISMQRYKGLGEM 745
             R+ +S+QRYKGLGEM
Sbjct: 715 PVRQKLSIQRYKGLGEM 731


>gi|224994121|dbj|BAH28873.1| DNA gyrase subunit B [Psychrobacter piscatorii]
          Length = 743

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/744 (44%), Positives = 456/744 (61%), Gaps = 54/744 (7%)

Query: 32  IGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE 91
           IGDTD  +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H EE
Sbjct: 1   IGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEE 60

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151
           G+SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y  ++ 
Sbjct: 61  GVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYT 120

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+ D  +     A + TGT++ F PSSD+F+   F YD L  RLRELSFLNS V+I L 
Sbjct: 121 DGVPDADIQQ-MEATDQTGTQIRFYPSSDVFTGTVFEYDILAKRLRELSFLNSGVRIVLT 179

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+R  +  E    +KGG+  FVSY++  K  + +         D IS+++A++W D Y+E
Sbjct: 180 DERIDKRHE--FEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGISVEVALQWTDTYNE 237

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            VLCFTNNIPQKDGGTHLSG RSALTR + SY+++    KK+K +  GDD REG T+++S
Sbjct: 238 KVLCFTNNIPQKDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAATGDDAREGLTAIVS 297

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +L E+P   K I  K+++A+  RDA
Sbjct: 298 VKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPTAGKAIANKIMEAARARDA 357

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAIL
Sbjct: 358 ARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRKTQAIL 417

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+
Sbjct: 418 PLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGS 477

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ ++   
Sbjct: 478 HIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNT 537

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQE 629
                     I+   L   ++D  +   +            ++    +   + +   D+ 
Sbjct: 538 KLHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSVDMTYDES 597

Query: 630 INVSLASKLANRLNF-----------------------------------IAEKSEKSWH 654
                 + +  +L+                                    I  ++  +  
Sbjct: 598 AMQDWKAAMQTKLDHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMTPVIGTEAASTAE 657

Query: 655 GSINNSD---------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
           G  ++++           V      +   ++L+ S I S         S+       +  
Sbjct: 658 GEASDNEALSTKAQWLPRVTVYVHQLAHHYLLDASFINSGEYGKLLRLSSEWNTLLESDA 717

Query: 706 SLICNG-----DKIKITGPCSLLD 724
            +           I +     L  
Sbjct: 718 FIRREASAGTTKDIPVRDFDYLWQ 741


>gi|328551706|gb|AEB22198.1| DNA gyrase subunit B [Bacillus amyloliquefaciens TA208]
          Length = 638

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 291/588 (49%), Positives = 410/588 (69%), Gaps = 5/588 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q +SYD + IQ+L+GL+AV+KRP MYIG T+   GLHH+++E++DN+IDE+L GY   
Sbjct: 2   EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCTD 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I + +  D S TV DNGRGIP  + ++ G  A EVIMT LHAGGKF+   YKVSGGLHGV
Sbjct: 61  INIEIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF 
Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFK 179

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ 
Sbjct: 180 ETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEV 239

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  
Sbjct: 240 IHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIND 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  + 
Sbjct: 300 YARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSS 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP
Sbjct: 360 ALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG
Sbjct: 420 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M  +I NG++YI +PPLY
Sbjct: 480 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            + +GK ++Y  +++ L++ L     S +         G ++   L  
Sbjct: 539 KVQQGKRVEYAYNDKQLDELLKELPQSPKPGLQRYKGLGEMNATQLWE 586



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 10/202 (4%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 442 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 499

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSL 722
               V    +      F +    + I +  +       L  +  G +++          L
Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMREIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKQLDEL 558

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L  +    + G+  QRYKGLGEMNA+QLWETT++P TR+LL+V + DA  AD+ F  LMG
Sbjct: 559 LKELPQSPKPGL--QRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEMLMG 616

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRR FI+ N+     LDI
Sbjct: 617 DKVEPRRNFIEANARYVKNLDI 638


>gi|154684524|ref|YP_001419685.1| DNA gyrase subunit B [Bacillus amyloliquefaciens FZB42]
 gi|154350375|gb|ABS72454.1| GyrB [Bacillus amyloliquefaciens FZB42]
          Length = 638

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 291/588 (49%), Positives = 410/588 (69%), Gaps = 5/588 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q +SYD + IQ+L+GL+AV+KRP MYIG T+   GLHH+++E++DN+IDE+L GY   
Sbjct: 2   EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCTD 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I + +  D S TV DNGRGIP  + ++ G  A EVIMT LHAGGKF+   YKVSGGLHGV
Sbjct: 61  INIEIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF 
Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFK 179

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ 
Sbjct: 180 ETIVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEV 239

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  
Sbjct: 240 VHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIND 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  + 
Sbjct: 300 YARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSS 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP
Sbjct: 360 ALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG
Sbjct: 420 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M  +I NG++YI +PPLY
Sbjct: 480 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            + +GK ++Y  +++ L++ L     S +         G ++   L  
Sbjct: 539 KVQQGKRVEYAYNDKQLDELLKELPQSPKPGLQRYKGLGEMNATQLWE 586



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 10/202 (4%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 442 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 499

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSL 722
               V    +      F +    + I +  +       L  +  G +++          L
Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMREIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKQLDEL 558

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L  +    + G+  QRYKGLGEMNA+QLWETT++P TR+LL+V + DA  AD+ F  LMG
Sbjct: 559 LKELPQSPKPGL--QRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEMLMG 616

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRR FI+ N+     LDI
Sbjct: 617 DKVEPRRNFIEANARYVKNLDI 638


>gi|72388563|gb|AAZ67925.1| DNA gyrase subunit B [Psychrobacter proteolyticus]
          Length = 743

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 331/744 (44%), Positives = 454/744 (61%), Gaps = 49/744 (6%)

Query: 27  RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86
           RP MYIGDTD  +GLHHM++EV+DN++DE+L G+ D I + ++ D S +V DNGRG+P D
Sbjct: 1   RPGMYIGDTDDGTGLHHMVFEVVDNSLDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVD 60

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H EEG+SAA+VIMT LH GGKF+   YKVSGGLHGVGVSVVNALS  L++ I REG  Y
Sbjct: 61  IHPEEGVSAAQVIMTVLHVGGKFDDNRYKVSGGLHGVGVSVVNALSQKLEMNIWREGYHY 120

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
             ++ +G+ D+ +     A + TGT++ F PSSD+F+   F YD L  RLRELSFLNS V
Sbjct: 121 HQTYTDGVPDSDIQQ-MEATDQTGTQIRFYPSSDVFTGTIFEYDILAKRLRELSFLNSGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+R  +  E    +KGG+  FVSY++  K  + +         D IS+++A++W 
Sbjct: 180 RIVLTDERIDKRHE--FEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGISVEVALQWT 237

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D Y+E VLCFTNNIPQKDGGTHLSG  SALTR + SY+++    KK+K +  GDD REG 
Sbjct: 238 DTYNEKVLCFTNNIPQKDGGTHLSGXXSALTRCLNSYMDRENLFKKEKVAATGDDAREGL 297

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T+++S+K     FSSQTK+KLVSSEV+S VES ++D  + +L E+P   K I  K++DA+
Sbjct: 298 TAIVSVKYQIQNFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPGAGKAIANKIIDAA 357

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+
Sbjct: 358 RARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRK 417

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDA
Sbjct: 418 TQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDA 477

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDG+HIRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ 
Sbjct: 478 DVDGSHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKVKKGRQELYLKDDEALKAYLLSS 537

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           ++             I+   L   ++D  +   +            ++    +   + + 
Sbjct: 538 TIDNTKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSTDM 597

Query: 627 --DQEINVSLASKLANRLNF----IAEKSEK--------------------------SWH 654
             D+       + +  +L+     ++ + E                           +  
Sbjct: 598 TYDESAMQDWKAAMQTKLDHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMTPVVGTEE 657

Query: 655 GSINNSD---------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
           G  ++S+           V      +   ++L+ S I S         S+       +  
Sbjct: 658 GEASDSEALSTKAQWLPRVTVYVHQLAHHYLLDASFINSGEYGKLLRLSSEWNTLLESDA 717

Query: 706 SLICNG-----DKIKITGPCSLLD 724
            +           I +     L  
Sbjct: 718 FIRREASAGTTKDIPVRDFDYLWQ 741


>gi|81251070|gb|ABB69874.1| DNA gyrase subunit B [Nitrosospira sp. GS832]
          Length = 555

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 334/548 (60%), Positives = 422/548 (77%), Gaps = 5/548 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N  +++Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L G+ D
Sbjct: 11  KNESSTAYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCD 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDL-HKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            I+V ++ D S TV DNGRGIPT + H +E   SAAE++MT LHAGGKF+  SYKVSGGL
Sbjct: 71  EISVIIHPDNSLTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I+R G ++++ F  G+   PLVVTG      GTEV FL S +
Sbjct: 131 HGVGVSVVNALSEWLRLTIRRNGQVHQIEFRMGVPVGPLVVTGKTE-RRGTEVHFLASKE 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD    RLRELSFLN+ V+I L+D+R+ +       + GG+ +FV Y++R K
Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--EIFAFVGGVRSFVEYVNRTK 247

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +     G +DNI ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR +
Sbjct: 248 SVLHPNIFYASGEKDNIMVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+EK+  +KK K    GDD REG + V S+K+ +P+FSSQTKEKLVSSEVR  VE  V
Sbjct: 308 NSYIEKNEVAKKAKIETSGDDMREGLSCVSSVKLFEPKFSSQTKEKLVSSEVRPAVEEIV 367

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +L E PL+AK I  K++DA+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+
Sbjct: 368 SQKLAEFLLEQPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDK++SSQEI +LITA
Sbjct: 428 NPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKLISSQEIASLITA 487

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PP
Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547

Query: 541 LYGITRGK 548
           LY I  GK
Sbjct: 548 LYKIKHGK 555


>gi|81251074|gb|ABB69877.1| DNA gyrase subunit B [Nitrosospira sp. NRS527]
          Length = 555

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 335/548 (61%), Positives = 423/548 (77%), Gaps = 5/548 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N  +++Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L G+ D
Sbjct: 11  KNESSTAYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCD 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDL-HKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            I+V ++ D S TV DNGRGIPT + H +E   SAAE++MT LHAGGKF+  SYKVSGGL
Sbjct: 71  EISVIIHPDNSLTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I+R G ++++ F  G+   PLVVTG      GTEV FL S +
Sbjct: 131 HGVGVSVVNALSEWLRLTIRRNGQVHQIEFRMGVPVGPLVVTGKTE-RRGTEVHFLASKE 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD    RLRELSFLN+ V+I L+D+R+ +       + GG+ +FV Y++R K
Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--EIFAFVGGVRSFVEYVNRTK 247

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +     G +DNI ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR +
Sbjct: 248 SVLHPNIFYASGEKDNIMVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+EK+  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR  VE  V
Sbjct: 308 NSYIEKNEVAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPAVEEIV 367

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +L E PL+AK I  K++DA+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+
Sbjct: 368 SQKLAEFLLEQPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDK++SSQEI +LITA
Sbjct: 428 NPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKLISSQEIASLITA 487

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PP
Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547

Query: 541 LYGITRGK 548
           LY I  GK
Sbjct: 548 LYKIKHGK 555


>gi|81251078|gb|ABB69880.1| DNA gyrase subunit B [Nitrosospira sp. TYM9]
          Length = 555

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 335/548 (61%), Positives = 423/548 (77%), Gaps = 5/548 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N  +++Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L G+ D
Sbjct: 11  KNESSTAYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCD 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDL-HKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            I+V ++ D S TV DNGRGIPT + H +E   SAAE++MT LHAGGKF+  SYKVSGGL
Sbjct: 71  EISVIIHPDNSLTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I+R G ++++ F  G+   PLVVTG      GTEV FL S +
Sbjct: 131 HGVGVSVVNALSEWLRLTIRRNGQVHQIEFRMGVPVGPLVVTGKTE-RRGTEVHFLASKE 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD    RLRELSFLN+ V+I L+D+R+ +       + GG+ +FV Y++R K
Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--EIFAFVGGVRSFVEYVNRTK 247

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +     G +DNI ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR +
Sbjct: 248 SVLHPNIFYASGEKDNIMVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+EK+  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR  VE  V
Sbjct: 308 NSYIEKNEVAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPAVEEIV 367

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +L E PL+AK I  K++DA+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+
Sbjct: 368 SQKLAEFLLEQPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDK++SSQEI +LITA
Sbjct: 428 NPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKLISSQEIASLITA 487

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PP
Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547

Query: 541 LYGITRGK 548
           LY I  GK
Sbjct: 548 LYKIKHGK 555


>gi|304315545|ref|YP_003850690.1| DNA gyrase subunit beta [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777047|gb|ADL67606.1| DNA gyrase, B subunit [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 633

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 300/589 (50%), Positives = 408/589 (69%), Gaps = 8/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +Y A  IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY
Sbjct: 1   MAN---EETYGASQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S +V D+GRGIPTD+H + G S  EV +T LHAGGKFN   YKVSGGL
Sbjct: 57  CKNIDVVIHKDNSVSVIDDGRGIPTDIHPQTGKSGVEVALTVLHAGGKFNNDVYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L++ +K+ G +YE  +  G+  + L + G   ++TGT +TF P  +
Sbjct: 117 HGVGLSVVNALSKRLEVIVKQNGKVYEQKYERGVPKSDLKIIGDT-DETGTTITFAPDDE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD L  RLRELSFLN  V+I L+D+R  +       Y+GGI  FV YL+R+K
Sbjct: 176 IFETLEYDYDILSQRLRELSFLNKGVRIRLMDERDGKE--DVFHYEGGIVEFVKYLNRNK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L   PI ++   D   +++AM++ND Y EN+  F NNI  ++GGTHL G ++ALT+ I
Sbjct: 234 EVLHPEPIYMESKSDTYEVEVAMQYNDSYTENIFSFANNIDTREGGTHLIGFKAALTKVI 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K + +++ G+D REG T+++S+K+ +P+F  QTK KL +SE+RS+V+S V
Sbjct: 294 NDYARKFNIIKDNDKNLQGEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSIVDSVV 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+A++EE+P  +K+I++K   A+  R+AAR+AR+LTRRK  L+  SLPGKLADCSE+
Sbjct: 354 TEKLTAFMEENPSLSKVILEKATSAARAREAARKARELTRRKSALESTSLPGKLADCSEK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K EL+LVEGDSAGGSAK GR    QAILPLRGKILNVE+AR D++LSS EI  +ITA
Sbjct: 414 DASKCELYLVEGDSAGGSAKMGRDSRYQAILPLRGKILNVEKARLDRILSSDEIKAMITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M  LI NG +YI +PP
Sbjct: 474 LGTGIGSD-FDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPP 532

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I + K + Y   ++ L++ L                G +    L +
Sbjct: 533 LYKIEKNKKVYYAYSDKELDNILKEIGRENYNVQRYKGLGEMDAEQLWD 581



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +  +       +  S      +V      V    +    
Sbjct: 450 ILNVEKARLDRILSSDEIKAMITALGTGIGSDFDISKLRYHKVVIMTDADVDGSHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  +  N           L + +  IGR+  ++QRYK
Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKIEKNKKVYYAYSDKELDNILKEIGRENYNVQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEM+A QLW+TT++P+ R++L+V + DA  AD++F+ LMGD+VEPRREFI++ +    
Sbjct: 570 GLGEMDAEQLWDTTMDPEKRTMLKVSLDDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|304405884|ref|ZP_07387542.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9]
 gi|304345127|gb|EFM10963.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9]
          Length = 636

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 294/566 (51%), Positives = 401/566 (70%), Gaps = 8/566 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  +  ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE+L G+
Sbjct: 1   MS--LNQNTYDESQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEVVDNSIDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV DNGRGIP   + +   S  EV+MT LHAGGKF  + YKVSGGL
Sbjct: 58  CTHIDVIVHEDNSITVVDNGRGIPVGENTKLKKSTVEVVMTVLHAGGKFGGEGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + + +KR+G++Y+  +  G     + V G +  +TGT V F P  +
Sbjct: 118 HGVGVSVVNALSEHVTVTVKRDGHVYQQEYRRGAPQYDIKVIGDSE-ETGTIVQFKPDPE 176

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    + Y+ LQ R+REL+FLN  + ISL D+R+ +         GGI  FV YL+R+
Sbjct: 177 IFTETTVYEYEILQSRIRELAFLNKGISISLTDERTGQSNIYKY--DGGIIEFVKYLNRN 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++ L ++PI ++G +D+I +++A+++ND Y +N+  F NNI   +GGTH SG +SALTR 
Sbjct: 235 REALHETPIYVEGEKDHIQVEVALQYNDSYSDNIYSFANNINTHEGGTHESGFKSALTRI 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  ++   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +SEVR +VESF
Sbjct: 295 INDYARRTNSIKDNDSNLSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESF 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + L  +L+E+P  +K IV+K L AS  R+AAR+AR+LTRRK  L+++SLPGKLADCS 
Sbjct: 355 FAEKLQEFLDENPSVSKRIVEKGLQASRAREAARKARELTRRKSALEVSSLPGKLADCSS 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L + EI  +IT
Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAIIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG D FDI K RYHKIIIMTDADVDGAHIRTLLLTFF+R M  +I  GF+YI +P
Sbjct: 475 ALGTGIG-DDFDIAKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGFIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLIN 565
           PL+ + R K ++Y + E+  +  +  
Sbjct: 534 PLFKVERNKVVRYAQSEKERDQIIAE 559



 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 6/199 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +  +       +  +      ++  
Sbjct: 440 RHFQAIL--PLRGKILNVEKARLDRILGNAEIRAIITALGTGIGDDFDIAKARYHKIIIM 497

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    K I +  I      +  +  N               I
Sbjct: 498 TDADVDGAHIRTLLLTFFYRYMRKIIDAGFIYIAQPPLFKVERNKVVRYAQSEKERDQII 557

Query: 727 FSIGRKGI--SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              G  G+  ++QRYKGLGEMNA+QLWETT++P++R++L+V I DA +AD +F  LMGD 
Sbjct: 558 AEFGE-GVKVNVQRYKGLGEMNATQLWETTMDPESRTMLQVTIEDAMEADVVFDTLMGDN 616

Query: 785 VEPRREFIQENSLPS-ALD 802
           VEPRR+FI + +     LD
Sbjct: 617 VEPRRDFIHQYAKYVKNLD 635


>gi|292669300|ref|ZP_06602726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia
           ATCC 43541]
 gi|292649141|gb|EFF67113.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia
           ATCC 43541]
          Length = 685

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 303/591 (51%), Positives = 413/591 (69%), Gaps = 6/591 (1%)

Query: 1   MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M D +   ++ Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH++YEV+DN+IDE+L 
Sbjct: 47  MGDEVTAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALA 105

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D + V ++ D S TV+DNGRGIP D+H E G+ A EV++T LHAGGKF    YKVSG
Sbjct: 106 GYCDNVEVVIHKDNSITVTDNGRGIPVDMH-ESGMPAVEVVLTVLHAGGKFGGDGYKVSG 164

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALSS +++ ++R+G IYE+SF  G+  N L   G     TGT V F+P 
Sbjct: 165 GLHGVGVSVVNALSSSMEVEVRRDGKIYEISFTRGVTVNKLHEIG-ISETTGTRVHFVPD 223

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +IF+V  ++++TL+HRLREL+FLN  + I+L+D+R  E R  T  ++GGI +FVS+L+R
Sbjct: 224 PEIFTVTTYSFETLKHRLRELAFLNHGITITLVDERGEEERRETFHFEGGIRSFVSHLNR 283

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ + + PI   G +D+  +++AM++ND Y EN+  F NNI  ++GGTHL+G + ALTR
Sbjct: 284 KKETINEEPIYFNGVKDDTVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTR 343

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
               +  +    K    ++ G+D REG T V+S+K+ +P+F  QTK KL +SEVR +V+S
Sbjct: 344 AANDFARRLSVLKDKDGNLSGEDVREGLTCVISLKVREPQFEGQTKTKLGNSEVRGIVDS 403

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V +GL+ + EE+P   K +++K L AS  R+AAR+AR+LTRRK  L+++SLPGKLADCS
Sbjct: 404 IVTEGLTEYFEENPAITKKVLEKGLMASRAREAARKARELTRRKNALEVSSLPGKLADCS 463

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+ ++ EI T+I
Sbjct: 464 VKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMI 523

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG++ FD++K RY KIIIMTDADVDGAHIRTLLLTFF+R M  L+ +G +YI +
Sbjct: 524 TAFGTGIGEE-FDLSKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQ 582

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY I + K   Y   +E     L                G ++   L  
Sbjct: 583 PPLYQIRKDKKHFYTYSDEEQAKKLDEIGRDGVTIQRYKGLGEMNPEQLWE 633



 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +        + +  S      ++      V    +   +
Sbjct: 502 ILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLSKRRYSKIIIMTDADVDGAHI--RT 559

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKGISMQR 738
            + +F  +Y +   +                DK              +  IGR G+++QR
Sbjct: 560 LLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDEEQAKKLDEIGRDGVTIQR 619

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEMN  QLWETT+NP+ R++L+V   DA  AD+LF+ LMGD+VEPRR+FI+EN+ L
Sbjct: 620 YKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGDKVEPRRQFIEENARL 679

Query: 798 PSALDI 803
              LDI
Sbjct: 680 VRNLDI 685


>gi|116754690|ref|YP_843808.1| DNA gyrase, B subunit [Methanosaeta thermophila PT]
 gi|116666141|gb|ABK15168.1| DNA gyrase subunit B [Methanosaeta thermophila PT]
          Length = 628

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 312/644 (48%), Positives = 425/644 (65%), Gaps = 18/644 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ +    YDA  I++++GL+AV+ RPSMYIG TD   GLHH++YEV+DN++DE++ GY
Sbjct: 1   MSETM----YDASHIKVMEGLEAVRHRPSMYIGSTD-VHGLHHLVYEVVDNSVDEAMAGY 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I+V ++ DGS +V D+GRGIP D+H +    A E++MT LHAGGKF+  +Y VSGGL
Sbjct: 56  CKEISVVIHGDGSVSVKDDGRGIPVDIHPQYNRPAVEIVMTVLHAGGKFDHDTYHVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL++ + REG +Y   +  G   + L  TG    +TGT V F P  +
Sbjct: 116 HGVGVSVVNALSEWLEVEVSREGRVYRQRYERGRPVSDLQETG-VSENTGTTVRFKPDPE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF V DF++D L  RLREL+FLN  ++IS+ D+RS   R  T  Y GGI +FV YL++ K
Sbjct: 175 IFEVTDFSFDVLSSRLRELAFLNRGLKISITDERSG--RSKTFHYDGGIISFVQYLNKSK 232

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L  +PI     RD++S+++AM++N  Y+E+V  F NNI  ++GGTHLSG R+ALT+ +
Sbjct: 233 EVLHPNPIYFSRVRDDVSVEVAMQYNTSYNESVFTFANNINTREGGTHLSGFRAALTKTV 292

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +V       K    + GDD REG  +V+S+++PDP+F  QTK +L +S VR +VES V
Sbjct: 293 NDFVR-EKKLLKGDAKLTGDDLREGLVAVVSVRLPDPQFEGQTKTRLGNSAVRGLVESLV 351

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++GL  + E +P  A+ IV+K  +A   R+AAR+A+++TRRK  L  + LPGKLADC ER
Sbjct: 352 SEGLMEYFELNPQVAEAIVEKATEAMRAREAARKAKEITRRKTALTSSGLPGKLADCVER 411

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP KSEL++VEG+SAGGSAKQGR+R  QA+LPLRGKILNVERAR DKML ++EI  LITA
Sbjct: 412 DPAKSELYIVEGESAGGSAKQGRNRHFQAVLPLRGKILNVERARLDKMLKNEEIRNLITA 471

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG D FDI K RYHKIIIMTDADVDG+HIRTLLLTFF+R M  LI  G++YI +PP
Sbjct: 472 LGTGIG-DDFDITKARYHKIIIMTDADVDGSHIRTLLLTFFYRYMQPLIEAGYVYIAQPP 530

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GKS++Y   +E L   L +    + +       G ++   L         ++  
Sbjct: 531 LYQVRKGKSVKYAYSDEELAKLLED---GKAVVQRYKGLGEMNPEQLWET-----TMNPE 582

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +       K  +E   I  V   E  +   V + +      N 
Sbjct: 583 KRTLLRVTLKDAVEADEIFSVLMGEQVEPRRVFIETHAREVRNL 626



 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 15/201 (7%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  +   E  + +  +L + + +  +    +  K           +
Sbjct: 442 LPLRGKILNVERARLDKMLKNEEIRNLITALGTGIGDDFDITKARYHK-----------I 490

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F +      I +  +       L  +  G  +K       L
Sbjct: 491 IIMTDADVDGSHIRTLLLTFFYRYMQPLIEAGYVY-IAQPPLYQVRKGKSVKYAYSDEEL 549

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
             +   G+    +QRYKGLGEMN  QLWETT+NP+ R+LLRV + DA +AD++FS LMG+
Sbjct: 550 AKLLEDGK--AVVQRYKGLGEMNPEQLWETTMNPEKRTLLRVTLKDAVEADEIFSVLMGE 607

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +VEPRR FI+ ++     LD+
Sbjct: 608 QVEPRRVFIETHAREVRNLDV 628


>gi|27262246|gb|AAN87404.1| DNA gyrase subunit B [Heliobacillus mobilis]
          Length = 641

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 297/594 (50%), Positives = 407/594 (68%), Gaps = 10/594 (1%)

Query: 1   MSDNIQ-----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D         S+YDA  IQ+L+GL+AV++RP MYIG T    GLHH++YE++DN+IDE
Sbjct: 1   MADQETWTVNGESTYDASQIQVLEGLEAVRRRPGMYIGSTSA-RGLHHLVYEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L GY D I V ++ D S  VSDNGRGIP D+H + G  A EV +T LHAGGKF  + YK
Sbjct: 60  ALAGYCDTIEVIIHEDNSIEVSDNGRGIPVDIHPKMGKPAVEVALTVLHAGGKFGGEGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG+SVVNALS  LK+ ++R G ++E  +  G+    L V G+A   TGT + F
Sbjct: 120 VSGGLHGVGLSVVNALSEKLKVTVRRNGKVHEQYYERGVTMTDLKVVGNAE-STGTTIYF 178

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P   IF   +++Y+TL HRLRELSFLN  V+I+L D R+ +       ++GGI  FV +
Sbjct: 179 KPDGLIFEELEYSYETLSHRLRELSFLNRGVKITLKDLRTGQES--IFAHEGGIIDFVKF 236

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+R+K  +    I  Q  ++ + +++A+++NDGY E +  + NNI  ++GGTH SG ++A
Sbjct: 237 LNRNKDLIHPHVIYFQNEKEGVHVEMALQYNDGYSETLFSYANNINTQEGGTHESGFKTA 296

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y  +    K++  ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEVR +
Sbjct: 297 LTRVINDYGRRINQIKENDSNLSGEDIREGITAVISVKVREPQFEGQTKTKLGNSEVRGI 356

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
            +S V +GLS +LEE+P   K +++K L A   R+AAR+AR+LTRRK  L+  SLPGKLA
Sbjct: 357 TDSCVTEGLSTYLEENPSVGKKVIEKALSAMRAREAARKARELTRRKSALESTSLPGKLA 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS +DP   EL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+LS++EI 
Sbjct: 417 DCSFKDPSMCELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILSNEEIR 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LITALGTGIG+D FD++K RYH++ +MTDADVDG+HIRTLLLTFFFR M  LI NG++Y
Sbjct: 477 ALITALGTGIGED-FDLSKARYHRVCLMTDADVDGSHIRTLLLTFFFRHMKPLIENGYVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I +PPLY + +G+ ++Y   +  L  YL                G ++   L +
Sbjct: 536 IAQPPLYQVKKGRDVRYYYHDNELNQYLDKNGRDGVTIQRYKGLGEMNPEQLWD 589



 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 6/119 (5%)

Query: 691 RIFSNRIEENY----LTILSLICNGDKIKITGPC-SLLDTIFSIGRKGISMQRYKGLGEM 745
           R     IE  Y       L  +  G  ++       L   +   GR G+++QRYKGLGEM
Sbjct: 523 RHMKPLIENGYVYIAQPPLYQVKKGRDVRYYYHDNELNQYLDKNGRDGVTIQRYKGLGEM 582

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           N  QLW+TT++P+ R++L+V + DA++A+ +F+ LMGD VEPRREFIQ ++     LDI
Sbjct: 583 NPEQLWDTTMDPEHRTILQVSMEDAAEAESIFTTLMGDRVEPRREFIQSHAKDVRNLDI 641


>gi|167043616|gb|ABZ08310.1| putative DNA gyrase B [uncultured marine microorganism
           HF4000_APKG2M17]
          Length = 655

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 294/596 (49%), Positives = 397/596 (66%), Gaps = 8/596 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N  ++ Y A +IQ+L+GL+AV+KRP+MYIGD  G  GLHH++ EV+DN+IDE+L G+
Sbjct: 10  MAENEASNQYGASNIQVLEGLEAVRKRPAMYIGDI-GPRGLHHLVNEVVDNSIDEALAGH 68

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ DGS ++ DNGRGIP D+H  E  SA EV+MT LHAGGKF++ +YKVSGGL
Sbjct: 69  CDAIDVIIHEDGSISIKDNGRGIPVDMHPIEKRSALEVVMTTLHAGGKFDKDTYKVSGGL 128

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPS 178
           HGVGVS VNALS  L+  I R+G +++ +F  G     +        G  TGT V F P 
Sbjct: 129 HGVGVSCVNALSEKLEASIWRDGALWKQTFEYGDPVGAVAKVRDMKDGESTGTLVRFWPD 188

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF   +F +D L  RLRE+++LN  V IS+ D R  E       ++GGI  FV YLD 
Sbjct: 189 GGIFQTTEFRFDRLADRLREMAYLNRHVYISIEDLREAEGLRDEYHFEGGIIEFVEYLDE 248

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + P+    I I      + +++AMR+N GY ENVL F NNI   +GGTH+SG R ALTR
Sbjct: 249 ARTPIHDETIYIADEDAEVPVEMAMRYNSGYTENVLSFVNNINTHEGGTHVSGFRRALTR 308

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY +K+   K  K  + GDD REG T +LSIK+ +P+F  QTK KL +SEV+  VES
Sbjct: 309 TLKSYADKNNLLKNVKVDLSGDDFREGITVILSIKVAEPQFEGQTKTKLGNSEVQGAVES 368

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V   L  WL++HP E+K IV+KV+ A+  R AAR+AR+L +RK       LPGKLADCS
Sbjct: 369 LVFLKLGEWLDDHPKESKRIVEKVIIAAEARAAARKARELVQRKNAFSSGGLPGKLADCS 428

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++ ++ E++LVEGDSAGGSAKQ R R  QAILPLRGKILNVE+AR D++L+++EI  ++
Sbjct: 429 SKNAEECEIYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARLDRILANEEIRNIV 488

Query: 479 TALGTGI--GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           TALGTG+  G+D FD  KLRYHKII+MTDADVDGAHIRTLLLTF +R M +L+  G++YI
Sbjct: 489 TALGTGLGAGEDDFDPEKLRYHKIIVMTDADVDGAHIRTLLLTFLYRHMHALVEAGYIYI 548

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKNDLRN 589
            +PPLY   +GK  +Y   ++ L++ +         +         G ++ + L +
Sbjct: 549 AQPPLYKAKKGKQEEYCWTDKQLKEVIERIGGDSPEKVTIQRYKGLGEMNPDQLWD 604



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                          +E+A +  +   E  + I  +L + L           E  +    
Sbjct: 455 RHFQAILPLRGKILNVEKARLDRILANEEIRNIVTALGTGLGA--------GEDDFDPEK 506

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
                ++      V    +   + + +F  ++                       K +  
Sbjct: 507 LRYHKIIVMTDADVDGAHI--RTLLLTFLYRHMHALVEAGYIYIAQPPLYKAKKGKQEEY 564

Query: 718 G-----PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
                    +++ I     + +++QRYKGLGEMN  QLW+TT+NP+TR L R+ I DA+ 
Sbjct: 565 CWTDKQLKEVIERIGGDSPEKVTIQRYKGLGEMNPDQLWDTTMNPETRLLQRITIDDAAA 624

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           AD +FS LMGD VEPRR+FI+ N+  + +D+
Sbjct: 625 ADRIFSTLMGDAVEPRRKFIERNAKYATIDV 655


>gi|81251090|gb|ABB69889.1| DNA gyrase subunit B [Nitrosovibrio sp. FJI82]
          Length = 559

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 330/548 (60%), Positives = 418/548 (76%), Gaps = 5/548 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   ++ Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EV+DNAIDE+L GY D
Sbjct: 15  NPANSNDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGYCD 74

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            ITVT++ D S +V DNGRGIPT + +  E   SAAE++MT LHAGGKF+  SYKVSGGL
Sbjct: 75  EITVTIHPDNSVSVLDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGL 134

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I+R G  +++ F  G    PL + G      GTEV FL S  
Sbjct: 135 HGVGVSVVNALSEWLRLTIRRGGLTHQIEFRMGAPVAPLAILGKTE-RRGTEVHFLASKQ 193

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD    RLRELSFLN+ V+I L+D+R+ +    T  + GG+++FV Y++R K
Sbjct: 194 IFGDIEYHYDIFARRLRELSFLNNGVKIHLVDQRTGKE--ETFAFAGGVKSFVEYINRAK 251

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +    +G ++ I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR +
Sbjct: 252 TVLHPNIFYARGEKEGIVVEVSMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 311

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+EK+  SKK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR  VE  V
Sbjct: 312 NSYIEKNELSKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPAVEEIV 371

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              LS +L+E PL+AK I  K++DA+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+
Sbjct: 372 TQKLSDFLQERPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGLGLPGKLADCQEK 431

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA
Sbjct: 432 DPALCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIISLITA 491

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 492 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 551

Query: 541 LYGITRGK 548
           LY +  GK
Sbjct: 552 LYKVKHGK 559


>gi|317120855|ref|YP_004100858.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885]
 gi|315590835|gb|ADU50131.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885]
          Length = 635

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 298/584 (51%), Positives = 398/584 (68%), Gaps = 5/584 (0%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YD   IQ+L+GL+AV++RP MYIG T G  GLHH+I+EV+DNA+DE+L G    ITVTL+
Sbjct: 6   YDESQIQVLEGLEAVRRRPGMYIGST-GPRGLHHLIWEVVDNAVDEALAGRCTAITVTLH 64

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGSC+V DNG GIP  +H + G    EV++T LHAGGKF+ ++YKVSGGLHGVGVSVVN
Sbjct: 65  ADGSCSVRDNGGGIPVGIHPKVGKPTVEVVLTMLHAGGKFDGQAYKVSGGLHGVGVSVVN 124

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFN 188
           ALS WL++ ++REG I+   +  G  D  L V G+    DTGT V F P  +IF   +F 
Sbjct: 125 ALSEWLEVEVRREGRIHRQRYRRGKPDTDLEVVGTTDPADTGTYVRFKPDPEIFEETEFK 184

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD +  RLRE++ LNS + I L D+R+ E       + GG+ +FV+ L+R K+PL   PI
Sbjct: 185 YDVVVGRLREIALLNSGLYIELKDERTGERN--LFQFMGGLRSFVALLNRTKEPLHPEPI 242

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +G RD + +++A++W   Y E +  F N I   +GGTH +G + ALTR +  Y  K+ 
Sbjct: 243 SYKGERDGVEVEMALQWTTSYVETLYSFANTIHTHEGGTHEAGFKMALTRVVNDYARKAN 302

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K  + ++ GDD REG T+VLS+K+P+P+F  QTK KL +SEVR VV+S   + L+ + 
Sbjct: 303 LIKNGEENLSGDDIREGLTAVLSVKLPEPQFEGQTKTKLGNSEVRGVVDSVTGEALATYF 362

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  A+ +V+K + A   R+AAR+AR+LTRRK  L++ +LPGKL DC+ RDP  +ELF
Sbjct: 363 EENPQVARRVVEKAITAMRAREAARKARELTRRKSALEVTALPGKLTDCTVRDPAMAELF 422

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQGR R  QA+LPLRGKILNVE+AR DK+L+  EI  LITA+GTGIG+D
Sbjct: 423 IVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDKILAHDEIRALITAIGTGIGED 482

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI K RYHKII+MTDADVDGAHIRTLLLTFFFR M  LI  G++YI +PPLY +  GK
Sbjct: 483 -FDIQKARYHKIILMTDADVDGAHIRTLLLTFFFRYMKPLIEAGYVYIAQPPLYLVRMGK 541

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
              Y  D++ LE +          + F     + ++      ++
Sbjct: 542 EEHYFYDDDQLEAFFRQIGKRMPAQRFKGLGEMNAEQLWETTMN 585



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 2/183 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  I     + +         ++      V    +    
Sbjct: 451 ILNVEKARLDKILAHDEIRALITAIGTGIGEDFDIQKARYHKIILMTDADVDGAHIRTLL 510

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I +  +      +  +    ++        L      IG++ +  QR+K
Sbjct: 511 LTFFFRYMKPLIEAGYVYIAQPPLYLVRMGKEEHYFYDDDQLEAFFRQIGKR-MPAQRFK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800
           GLGEMNA QLWETT+NP+TR+LL+V + DA  AD +FS LMG  VEPRREFI++++    
Sbjct: 570 GLGEMNAEQLWETTMNPETRTLLQVTLEDAMAADQIFSILMGSRVEPRREFIEQHARKVR 629

Query: 801 -LD 802
            LD
Sbjct: 630 FLD 632


>gi|225181142|ref|ZP_03734588.1| DNA gyrase, B subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168111|gb|EEG76916.1| DNA gyrase, B subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 650

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 296/601 (49%), Positives = 418/601 (69%), Gaps = 15/601 (2%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++   N+      YD   IQ+L+GL+AV++RP MYIG T G  GLHH+++EV+DN+IDE
Sbjct: 1   MAEEKNNNPLNNGHYDESHIQVLEGLEAVRRRPGMYIGST-GARGLHHLVFEVVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+ D I +T+  D   TVSD+GRGIP  +  + G  A EV++T LHAGGKF  + YK
Sbjct: 60  ALAGHCDDIVITIEKDNIITVSDDGRGIPVGIQPQTGRPAVEVVLTVLHAGGKFGGEGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WL++ + R+G I++MSF  G +   L VTG     TGT++ F
Sbjct: 120 VSGGLHGVGVSVVNALSEWLEVEVHRDGKIHQMSFARGAIVKELTVTGKTK-KTGTQIRF 178

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMFYKGGI 229
            P +++F   +F+Y+TL  RLREL+FLN  ++I++ D+R+       E  + T  Y GGI
Sbjct: 179 KPDAEVFETVEFSYETLSKRLRELAFLNKGIRITVADERTELTDETNEKVKETFKYDGGI 238

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSR-DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++FV +L+++K+PL +  I ++  + D   +++A++++DGY++ +L F NNI   +GGTH
Sbjct: 239 KSFVEFLNKNKEPLHKKAIYLEQEKEDCCQVEIALQYHDGYNDLILSFANNIHTHEGGTH 298

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +SALTR I  Y  K+   K+++ +V G+D REG T+V+S+K+ +P+F  QTK KL 
Sbjct: 299 EAGFKSALTRLINDYARKNNLLKENESNVSGEDIREGLTAVISVKLLEPQFEGQTKTKLG 358

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SE+R +V+SF+ + L A+L E+P  AK +V+K + A+  R+AAR+AR+L RRK  L++ 
Sbjct: 359 NSEMRGIVDSFLYEELGAYLGENPQMAKRLVEKSVSAARAREAARKARELARRKSALEVT 418

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC+ RDP   EL+LVEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+
Sbjct: 419 SLPGKLADCASRDPAMCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKIINVEKARLDKI 478

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           L+++EI T+ITALGTGI    FD+ K RYHKIIIMTDADVDG+HIRTLLLTFF+R M  L
Sbjct: 479 LANEEIRTIITALGTGI-STDFDLAKARYHKIIIMTDADVDGSHIRTLLLTFFYRYMQPL 537

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  G++YI +PPLY + + +   YV  E+ L+  L                G ++   L 
Sbjct: 538 IQAGYVYIAQPPLYLVKKKQKEHYVYTEDQLDRLLKEIGREGNSLQRYKGLGEMNPEQLW 597

Query: 589 N 589
           +
Sbjct: 598 S 598



 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +       +  +      ++      V    +    
Sbjct: 467 IINVEKARLDKILANEEIRTIITALGTGISTDFDLAKARYHKIIIMTDADVDGSHIRTLL 526

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  +     +  +     L   +  IGR+G S+QRYK
Sbjct: 527 LTFFYRYMQPLIQAGYVYIAQPPLYLVKKKQKEHYVYTEDQLDRLLKEIGREGNSLQRYK 586

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLW TT++P+ R++L+V + DA +ADD+F+ LMGD+VEPRR FI+ ++    
Sbjct: 587 GLGEMNPEQLWSTTMDPEKRTILQVTMEDAIRADDMFTVLMGDKVEPRRVFIESHANQVR 646

Query: 800 ALDI 803
            LDI
Sbjct: 647 NLDI 650


>gi|320531090|ref|ZP_08032119.1| DNA gyrase, B subunit [Selenomonas artemidis F0399]
 gi|320136672|gb|EFW28625.1| DNA gyrase, B subunit [Selenomonas artemidis F0399]
          Length = 684

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 300/583 (51%), Positives = 408/583 (69%), Gaps = 4/583 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH++YEV+DN+IDE+L GY D + V
Sbjct: 54  DADYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALAGYCDTVAV 112

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S TV DNGRGIP D+H E G+ A EV++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 113 TIHRDNSITVVDNGRGIPVDMH-ESGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVS 171

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSS + ++++R+G+IYE++F  G     L   G     TGT V F+P  +IF+V  
Sbjct: 172 VVNALSSSMDVQVRRDGHIYEIAFARGNTTEKLHEVG-TSETTGTRVHFVPDPEIFTVTT 230

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++++TL+HRLREL+FLN  + I+L D+R  E R  T  + GGI +FVS+L+R K+ + + 
Sbjct: 231 YSFETLKHRLRELAFLNHGITITLTDERGEELRSETFHFDGGIRSFVSHLNRKKETINEE 290

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI   G +D+  +++AM++ND Y EN+  F NNI  ++GGTHL+G + ALTR    +  +
Sbjct: 291 PIYFNGVKDDTVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARR 350

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEVR +V+S V +GL+ 
Sbjct: 351 LNVLKEKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTE 410

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P   K ++ K L AS  R+AAR+AR+LTRRK  L+++SLPGKLADCS +DP + E
Sbjct: 411 YFEENPNVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCE 470

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+ ++ EI T+ITA GTGIG
Sbjct: 471 IYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGIG 530

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           ++ FD++K RY KIIIMTDADVDGAHIRTLLLTFF+R M  L+ +G +YI +PPLY I +
Sbjct: 531 EE-FDLSKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMRPLVDHGHVYIAQPPLYQIRK 589

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            K   Y   +E     L                G ++   L  
Sbjct: 590 DKKHFYTYTDEEQAKKLDEIGRDGVTIQRYKGLGEMNPEQLWE 632



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +        + +  S      ++      V    +   +
Sbjct: 501 ILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLSKRRYSKIIIMTDADVDGAHI--RT 558

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP--CSLLDTIFSIGRKGISMQR 738
            + +F  +Y R   +                DK              +  IGR G+++QR
Sbjct: 559 LLLTFFYRYMRPLVDHGHVYIAQPPLYQIRKDKKHFYTYTDEEQAKKLDEIGRDGVTIQR 618

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEMN  QLWETT+NP  R++LRV   DA  AD+LF+ LMGD+VEPRR+FI+EN+ L
Sbjct: 619 YKGLGEMNPEQLWETTMNPSERTMLRVAAEDAEAADELFTILMGDKVEPRRQFIEENARL 678

Query: 798 PSALDI 803
              LDI
Sbjct: 679 VRNLDI 684


>gi|220932011|ref|YP_002508919.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
 gi|219993321|gb|ACL69924.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
          Length = 637

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 301/613 (49%), Positives = 411/613 (67%), Gaps = 8/613 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y A+ I+ILKGL+AV+KRP MYIG T G  GLHH+++EV+DN+IDE L GY D I VT+N
Sbjct: 9   YGAEQIEILKGLEAVRKRPGMYIGST-GIRGLHHLVWEVVDNSIDEYLAGYGDKIEVTIN 67

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D S TV D GRGIP + H E G+ AA+V+MT LHAGGKFN  SYKVSGGLHGVG+SVVN
Sbjct: 68  EDNSITVEDWGRGIPAEEHPETGLPAAQVVMTTLHAGGKFNNNSYKVSGGLHGVGISVVN 127

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS WL+L     GN Y   +  G         G   N  GT ++F P  +IF V +F Y
Sbjct: 128 ALSEWLELTTYWNGNEYYQRYERGYPKTKFQKLG-TSNRNGTIISFKPDPEIFDVTEFKY 186

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           +TL HRL+E +FLN  + + LIDKRS + ++    Y GGI+AFV YL+++++ + +  I 
Sbjct: 187 ETLAHRLQESAFLNKELSLILIDKRSDKTKKEVFQYDGGIKAFVEYLNKNRQVINEDIIY 246

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
            +    +  I++A+++N+GY+E +  + NNI   DGG HL+G ++ALT+ I ++ +++  
Sbjct: 247 TEKENGDYYIEVALQYNEGYNERIFSYANNINTVDGGYHLTGFKTALTKAINNFAKQNNL 306

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K+   ++ G+D REG T+V+++K+P+P+F  QTK KL +SE+RS+VES + D LS +L+
Sbjct: 307 LKQSDPTLTGNDVREGLTAVVNVKLPNPQFEGQTKSKLGNSEIRSIVESNIYDYLSLYLD 366

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P   K IV K + A   R A+++AR+LTRRK  L+  SLPGKLADC+ R P+KSELFL
Sbjct: 367 SNPEVGKKIVDKAIQAIRARQASKKARELTRRKNALNSHSLPGKLADCASRKPEKSELFL 426

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR+R  QAILPL+GKI+NVERAR DK+LS+ EI T+I+ALGTGIGQ+ 
Sbjct: 427 VEGDSAGGSAKQGRNRHFQAILPLKGKIMNVERARLDKILSNNEIATIISALGTGIGQE- 485

Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549
           F+I+KLRYHKIIIMTDADVDGAHI TLLLT F+R MP LI  G++YI +PPLY ++  K+
Sbjct: 486 FNIDKLRYHKIIIMTDADVDGAHIATLLLTLFYRYMPELIKEGYIYIAQPPLYKVSWKKN 545

Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
           ++Y+  ++ LE                   G ++   L         ++   +       
Sbjct: 546 IRYLYTDKELESLKRELENKSYSIQRYKGLGEMNPRQLWET-----TMNPETRKLLRIEI 600

Query: 610 KTFIEQAVISGVF 622
              IE   I    
Sbjct: 601 DDEIEADEIFTRL 613



 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K  S+QRYKGLGEMN  QLWETT+NP+TR LLR++I D  +AD++F+RLMG     RREF
Sbjct: 565 KSYSIQRYKGLGEMNPRQLWETTMNPETRKLLRIEIDDEIEADEIFTRLMGSNASLRREF 624

Query: 792 IQENSLPS-ALDI 803
           I  N+     LDI
Sbjct: 625 IISNADMVDELDI 637


>gi|220930856|ref|YP_002507764.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
 gi|219992166|gb|ACL68769.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
          Length = 642

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 294/593 (49%), Positives = 406/593 (68%), Gaps = 7/593 (1%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++        +Y+A+ IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE++
Sbjct: 1   MAEESFLNNKGNYEAEHIQVLEGLEAVRKRPGMYIGST-GMDGLHHLVYEVVDNSIDEAM 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           +GY D+I V +      TV DNGRGIP D H +    A EV++T LHAGGKF    YKVS
Sbjct: 60  QGYCDLIEVIIKPGNIITVKDNGRGIPVDPHPKLKKPAVEVVLTVLHAGGKFGGDGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRI-KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           GGLHGVGVSVVNALS WL++ +  R+G +Y   +  GI    L V G     TGT ++F 
Sbjct: 120 GGLHGVGVSVVNALSKWLEVEVCWRDGKVYHQKYNRGIPVYDLKVIGECS-GTGTTISFK 178

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P  +IF   +F Y  L  RL+EL+FLN  V+I L D+R  E R+    ++GG+ +FV YL
Sbjct: 179 PDEEIFEDVNFKYKVLAQRLKELAFLNKGVRIILRDEREEEARQDEYCFEGGLVSFVKYL 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K PL   P  ++   +N  +++A+++NDGY +++  F NNI  ++GGTHLSG +SAL
Sbjct: 239 NKNKNPLFDEPFYLEEKDENREVEIAIQYNDGYVDSIFTFANNINTREGGTHLSGFKSAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y       K++  ++ G+D REG T+++S+++ DP+F  QTK KL +SE+R  V
Sbjct: 299 TRTVNDYARSKGILKENDENLTGEDIREGITAIISVRLTDPQFEGQTKTKLGNSEIRGFV 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +S ++  L  +LEE+P   KIIV+K   A+  R AA++AR+LTRRKG L   +LPGKLAD
Sbjct: 359 DSALSSNLRTFLEENPKIGKIIVEKARSAARARKAAKKARELTRRKGALSNTALPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS RD + +E+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR +K+L+++EI  
Sbjct: 419 CSSRDTENTEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARLNKILNNEEIRA 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITA+GTGIG D FDINK RY KIIIMTDADVDGAHIRTLLLTFF+R M  LI NG +YI
Sbjct: 479 LITAIGTGIG-DEFDINKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIENGMIYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +PPLY + +G+  +YV ++  L+  L +    +         G ++ + L  
Sbjct: 538 AQPPLYKVKKGRREEYVYNDRGLQKLLNDIGRDKITLQRYKGLGEMNPDQLWE 590



 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  I       +  +      ++      V    +    
Sbjct: 459 ILNVEKARLNKILNNEEIRALITAIGTGIGDEFDINKARYGKIIIMTDADVDGAHIRTLL 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  I      +  +     +  +     L   +  IGR  I++QRYK
Sbjct: 519 LTFFYRYMRPLIENGMIYIAQPPLYKVKKGRREEYVYNDRGLQKLLNDIGRDKITLQRYK 578

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT+NP+ R +L+VKI DA  AD+ F+ LMGD+V+PRREFIQE++    
Sbjct: 579 GLGEMNPDQLWETTMNPENRIILKVKIEDAVVADETFTTLMGDKVQPRREFIQEHAHEVQ 638

Query: 800 ALDI 803
            LD+
Sbjct: 639 NLDV 642


>gi|15893304|ref|NP_346653.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824]
 gi|18273027|sp|P94604|GYRB_CLOAB RecName: Full=DNA gyrase subunit B
 gi|15022823|gb|AAK77993.1|AE007513_6 DNA gyrase (topoisomerase II) B subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325507413|gb|ADZ19049.1| DNA gyrase subunit B [Clostridium acetobutylicum EA 2018]
          Length = 637

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 290/592 (48%), Positives = 419/592 (70%), Gaps = 10/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N  YD   IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DN+IDE+L GY
Sbjct: 1   MSEK--NEIYDESQIQVLEGLEAVRKRPGMYIGST-GTRGLHHLVYEIVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TVSD+GRG+P  +H +      EVIMT LHAGGKF   +Y+VSGGL
Sbjct: 58  CSHIKVFIHKDNSVTVSDDGRGMPIGIHHKMKKPTVEVIMTILHAGGKFGGGAYRVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS   ++ +K EG+I++ ++  G + +P    G + ++ GT++ F P  +
Sbjct: 118 HGVGASVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFEKIGDS-DEHGTKIYFKPDPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YDTL  RLREL+FLN  ++I L D+R  +       Y+GG+++FVSYL+R+K
Sbjct: 177 IFEDTEYDYDTLSQRLRELAFLNKGIKIELTDERHDKN--EIFHYEGGLKSFVSYLNRNK 234

Query: 241 KPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + + + PI ++GS   N S+++A+++NDGY+EN+  F NNI   +GGTHL+G ++ALTR 
Sbjct: 235 EVVFKEPIYVEGSIDSNYSVEIALQYNDGYNENIFSFANNIHTIEGGTHLAGFKTALTRV 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y +K    K++ +++ G+D REG T+V+S+K+ +P+F  QTK KL ++EVR +V+S 
Sbjct: 295 INDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIVDSI 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +++ +S +LEE+P   K+++ K L AS  R+AA++AR++TRRK VL+  SLPGKLADCS 
Sbjct: 355 ISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLADCSS 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D ++ E+++VEGDSAGGSAKQGR+R  QAILPLRGKI+NVE+ R DK+L+S+EI  + T
Sbjct: 415 KDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKAMAT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A G GIG+D FD++KLRYHKIIIMTDADVDGAHIRTL+LTFF+R M  LI  G ++I +P
Sbjct: 475 AFGGGIGKD-FDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           PLY +T+ +   Y   ++ LED L +    ++          G ++   L  
Sbjct: 534 PLYKVTKTRKEYYAYSDKELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWE 585



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 14/203 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+  I  + N E  + +  +    +    +    +  K           +
Sbjct: 446 LPLRGKIMNVEKQRIDKILNSEEIKAMATAFGGGIGKDFDVSKLRYHK-----------I 494

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F +    + I    +      +  +     +        L 
Sbjct: 495 IIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSDKELE 554

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           D +  +G K     +QRYKGLGEMN  QLWETT+NP+ R+L++V I DA  AD++F+ LM
Sbjct: 555 DVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIFTILM 614

Query: 782 GDEVEPRREFIQENS-LPSALDI 803
           GD+V+PRR+FI+EN+     LD+
Sbjct: 615 GDKVDPRRKFIEENATKVVNLDV 637


>gi|189502463|ref|YP_001958180.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497904|gb|ACE06451.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 651

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 287/602 (47%), Positives = 398/602 (66%), Gaps = 15/602 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M +  +  ++Y ADSIQ+L+GL+AV+KRP+MYIGD  G  GLHH+++EV+DN+IDE+L G
Sbjct: 1   MEETQKLQNTYSADSIQVLEGLEAVRKRPAMYIGDI-GPKGLHHLVWEVVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I V ++ D S TVSDNGRGIPTD+H +E  SA EV+MT LHAGGKF++ +YKVSGG
Sbjct: 60  YCTTIKVQIHSDNSITVSDNGRGIPTDIHAKEKRSALEVVMTVLHAGGKFDKGTYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ L+  + R+G IY+  +  G    P+   G+     GT + F P  
Sbjct: 120 LHGVGVSCVNALSTHLQATVYRDGKIYQQEYAKGAPLYPVKEVGTTT-LRGTTIHFQPDD 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSY 235
            IF+   +NY T+  RL EL++LN+ + I L D R  +      + T   +GG+  FV+Y
Sbjct: 179 SIFTTTTYNYSTIAARLGELAYLNAGLTIELTDLREQDQEGNFLQETFHSEGGLAEFVAY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD  ++ L+  PI ++G + ++ + +A+ +N G+ ENV+ + NNI   +GGTH++G R A
Sbjct: 239 LDDAREKLIPQPIYMEGEKYDVPVQVALSYNTGFTENVVSYVNNINTIEGGTHVAGFRRA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY EKS   +K K  ++GDD REG T+V+S+K+ +P+F  QTK KL ++EV   
Sbjct: 299 LTRTLKSYAEKSNLLEKAKVEIVGDDFREGLTAVISVKVSEPQFEGQTKTKLGNAEVVGA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+S V++ L  +LEEHP EAKIIV KV+ A+  R AAR+AR++ +RK VL    LPGKLA
Sbjct: 359 VDSCVSETLQNYLEEHPQEAKIIVSKVILAAQARHAARKAREMVQRKNVLTGGGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS+ DP   EL+LVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A+  ++  ++++ 
Sbjct: 419 DCSDNDPAACELYLVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKAQEHRIYDNEQLR 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            +I ALG   G +         KLRYHK+IIMTDADVDG+HIRTL+LTFF+R +  L+  
Sbjct: 479 NMIMALGITFGTEEDAKAVNLEKLRYHKVIIMTDADVDGSHIRTLILTFFYRYLKVLLER 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDL 587
           GFLYI  PPLY + RG   +Y   E+      +D+  +              G ++   L
Sbjct: 539 GFLYIALPPLYLVKRGSESRYCWTEQDRIAAVKDFSPDGKTESVNIQRYKGLGEMNAEQL 598

Query: 588 RN 589
             
Sbjct: 599 WT 600



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 13/194 (6%)

Query: 621 VFNCESDQEINVSLASKLANRL-----NFIAEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E  QE  +    +L N +      F  E+  K+ +        ++      V    
Sbjct: 460 ILNVEKAQEHRIYDNEQLRNMIMALGITFGTEEDAKAVNLEKLRYHKVIIMTDADVDGSH 519

Query: 676 VLEGSSIFSFGSKYKRIFSNR-IEENYLTILSLICNG-DKIKITGPCSLLDTIFSIGRKG 733
           +   + I +F  +Y ++   R      L  L L+  G +          +  +      G
Sbjct: 520 I--RTLILTFFYRYLKVLLERGFLYIALPPLYLVKRGSESRYCWTEQDRIAAVKDFSPDG 577

Query: 734 ----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
               +++QRYKGLGEMNA QLW TT++P  RSL +V I  A++AD LFS LMGDEV PRR
Sbjct: 578 KTESVNIQRYKGLGEMNAEQLWTTTMDPAVRSLKQVTIESAAEADHLFSILMGDEVAPRR 637

Query: 790 EFIQENSLPSALDI 803
           +FIQ ++  + +DI
Sbjct: 638 DFIQLHAKYAQIDI 651


>gi|108802861|ref|YP_642798.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941]
 gi|108764104|gb|ABG02986.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941]
          Length = 644

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 290/590 (49%), Positives = 400/590 (67%), Gaps = 9/590 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
               S YDA SIQ+L+GL+AVK+RP MYIG T G  GLHH+++E++DN+IDE+L GY   
Sbjct: 8   KHSKSDYDASSIQVLEGLEAVKRRPGMYIGST-GPRGLHHLVWEIVDNSIDEALAGYCTE 66

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I+VT++ D S TVSD+GRG+P  + ++ G SAAEVIMT LHAGGKF+ ++YKVSGGLHGV
Sbjct: 67  ISVTVHPDNSVTVSDDGRGMPVGVMEKYGKSAAEVIMTTLHAGGKFDGQTYKVSGGLHGV 126

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFLPSSD 180
           G SVVNALS WL+L I+R+G+++   +  G     L      G     TGT V F P   
Sbjct: 127 GASVVNALSEWLELEIRRDGHLWTQRYERGFPVTGLERGRKLGK-REGTGTTVRFRPDPQ 185

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F++DTL  R RE +FLN  ++I L D+R  E RE+   Y+GGI+ FV++++  K
Sbjct: 186 IFETVEFSFDTLSRRFRESAFLNKGLRIRLADER-EEGREVVYRYEGGIKDFVAHINEAK 244

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ ++ +      +   +++AM+WN GY ++V  F NNI   +GGTHLSG R+ALTR I
Sbjct: 245 DPVHKTILYFHREEEAGDVEVAMQWNSGYQDSVFTFANNINTHEGGTHLSGFRAALTRTI 304

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K+ + ++ GDD REG  +V+S+K+ +P+F  QTK KL ++E++ +VES  
Sbjct: 305 NEYARQKGLLKEKEENLTGDDIREGLAAVISVKLREPQFEGQTKTKLGNTEIKGLVESAT 364

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N  L+ +LEE+P +A+ IV K ++AS  R AA +AR    RKG L+ ++LPGKLADCS +
Sbjct: 365 NRHLAEFLEENPGQARAIVTKAINASRARLAASKARKAI-RKGYLESSTLPGKLADCSSK 423

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A  +K+LS+ EI  +I+A
Sbjct: 424 DPARSELYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKANINKVLSNAEIQAMISA 483

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G DSF+I + RYHKI+IMTDADVDG+HIRTL+LTF +R MP LI  G++YI +PP
Sbjct: 484 IGAGVG-DSFNIEEARYHKIVIMTDADVDGSHIRTLVLTFLYRNMPELIEAGYVYIAQPP 542

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           LY IT  +   YV  +  L++ L                 G ++   L  
Sbjct: 543 LYKITHNRRDVYVYSDAELQETLRRLRADGSATVSRFKGLGEMNPQQLWE 592



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 116/299 (38%), Gaps = 20/299 (6%)

Query: 513 IRTLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           I+ L+ +   R +   +    G    I       +R +       +   + YL + +L  
Sbjct: 356 IKGLVESATNRHLAEFLEENPGQARAIVTKAINASRARLAASKARKAIRKGYLESSTLPG 415

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKD-----FYPNHDKTFIEQAVISGVFNCE 625
           ++          S+  +           +                  +E+A I+ V +  
Sbjct: 416 KLADCSSKDPARSELYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKANINKVLSNA 475

Query: 626 SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
             Q +  ++ + + +  N    +  K    +  + D    R    V          +   
Sbjct: 476 EIQAMISAIGAGVGDSFNIEEARYHKIVIMTDADVDGSHIRTL--VLTFLYRNMPELIEA 533

Query: 686 GSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGE 744
           G  Y              +  +  N   + +     L +T+  +   G  ++ R+KGLGE
Sbjct: 534 GYVYIAQ---------PPLYKITHNRRDVYVYSDAELQETLRRLRADGSATVSRFKGLGE 584

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           MN  QLWETT++P  R+LL+V I  A+ AD+LF+ LMGD+VEPR+ FI+ N+  +  +D
Sbjct: 585 MNPQQLWETTMDPANRTLLQVTIDSAATADELFTALMGDKVEPRKAFIEANAREAKNID 643


>gi|323705855|ref|ZP_08117427.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534851|gb|EGB24630.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 633

 Score =  633 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 300/589 (50%), Positives = 410/589 (69%), Gaps = 8/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+++    +Y A  IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY
Sbjct: 1   MAND---ETYGASQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S +V D+GRGIPTD+H + G S  EV +T LHAGGKFN   YKVSGGL
Sbjct: 57  CKNIDVIIHKDNSVSVIDDGRGIPTDIHPQTGKSGVEVALTVLHAGGKFNNDVYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L++ +K+ G +Y+  +  G+    L V G   ++TGT +TF P  +
Sbjct: 117 HGVGLSVVNALSKNLEVIVKQNGKVYQQKYERGVPKTDLTVIGET-DETGTTITFSPDGE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD L  RLRELSFLN  V+I L+D+R  +       Y+GGI  FV YL+R+K
Sbjct: 176 IFETLEYDYDVLSQRLRELSFLNKGVKIRLVDERDGKE--DVFHYEGGIVEFVKYLNRNK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L   PI ++   D   +++AM++ND Y EN+  F NNI  ++GGTHL G ++ALT+ I
Sbjct: 234 EVLHPEPIYMESKSDTYEVEVAMQYNDSYTENIFSFANNIDTREGGTHLIGFKTALTKVI 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K++ +++ G+D REG T+++S+K+ +P+F  QTK KL +SE+RS+V+S V
Sbjct: 294 NDYARKFNIIKENDKNLQGEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSIVDSVV 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+A++EE+P  +K+I++K   A+  R+AAR+AR+LTRRK  L+  SLPGKLADCSE+
Sbjct: 354 TEKLTAFMEENPSLSKVILEKATSAARAREAARKARELTRRKSALESTSLPGKLADCSEK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K EL+LVEGDSAGGSAK GR  + QAILPLRGKILNVE+AR D++LSS EI  +ITA
Sbjct: 414 DASKCELYLVEGDSAGGSAKMGRDSKYQAILPLRGKILNVEKARLDRILSSDEIKAMITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M  LI NG +YI +PP
Sbjct: 474 LGTGIGSD-FDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNIYIAQPP 532

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I + K + Y   ++ L++ L                G +    L +
Sbjct: 533 LYKIEKNKKVYYAYSDKELDNILKEIGRENYNVQRYKGLGEMDAEQLWD 581



 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +  +       +  S      +V      V    +    
Sbjct: 450 ILNVEKARLDRILSSDEIKAMITALGTGIGSDFDISKLRYHKVVIMTDADVDGSHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  I      +  +  N           L + +  IGR+  ++QRYK
Sbjct: 510 LTFFYRFMRPLIENGNIYIAQPPLYKIEKNKKVYYAYSDKELDNILKEIGRENYNVQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEM+A QLW+TT++P+ R++L+V + DA  AD++F+ LMGD+VEPRREFI++ +    
Sbjct: 570 GLGEMDAEQLWDTTMDPEKRTMLKVSLDDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|313894727|ref|ZP_07828288.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976636|gb|EFR42090.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 684

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 300/583 (51%), Positives = 408/583 (69%), Gaps = 4/583 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH++YEV+DN+IDE+L GY D + V
Sbjct: 54  DADYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALAGYCDTVAV 112

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S TV DNGRGIP D+H E G+ A EV++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 113 TIHRDNSITVVDNGRGIPVDMH-ESGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVS 171

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSS + ++++R+G+IYE++F  G     L   G     TGT V F+P  +IF+V  
Sbjct: 172 VVNALSSSMDVQVRRDGHIYEIAFARGNTTEKLHEVG-TSETTGTRVHFVPDPEIFTVTT 230

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++++TL+HRLREL+FLN  + I+L D+R  E R  T  + GGI +FVS+L+R K+ + + 
Sbjct: 231 YSFETLKHRLRELAFLNHGITITLTDERGEELRSETFHFDGGIRSFVSHLNRKKETINEE 290

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI   G +D+  +++AM++ND Y EN+  F NNI  ++GGTHL+G + ALTR    +  +
Sbjct: 291 PIYFNGVKDDTVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARR 350

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEVR +V+S V +GL+ 
Sbjct: 351 LSVLKEKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTE 410

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P   K ++ K L AS  R+AAR+AR+LTRRK  L+++SLPGKLADCS +DP + E
Sbjct: 411 YFEENPNVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCE 470

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+ ++ EI T+ITA GTGIG
Sbjct: 471 IYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGIG 530

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           ++ FD++K RY KIIIMTDADVDGAHIRTLLLTFF+R M  L+ +G +YI +PPLY I +
Sbjct: 531 EE-FDLSKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMRPLVDHGHVYIAQPPLYQIRK 589

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            K   Y   +E     L                G ++   L  
Sbjct: 590 DKKHFYTYTDEEQAKKLDEIGRDGVTIQRYKGLGEMNPEQLWE 632



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +        + +  S      ++      V    +   +
Sbjct: 501 ILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLSKRRYSKIIIMTDADVDGAHI--RT 558

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP--CSLLDTIFSIGRKGISMQR 738
            + +F  +Y R   +                DK              +  IGR G+++QR
Sbjct: 559 LLLTFFYRYMRPLVDHGHVYIAQPPLYQIRKDKKHFYTYTDEEQAKKLDEIGRDGVTIQR 618

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEMN  QLWETT+NP  R++LRV   DA  AD+LF+ LMGD+VEPRR+FI+EN+ L
Sbjct: 619 YKGLGEMNPEQLWETTMNPSERTMLRVAAEDAEAADELFTILMGDKVEPRRQFIEENARL 678

Query: 798 PSALDI 803
              LDI
Sbjct: 679 VRNLDI 684


>gi|311070653|ref|YP_003975576.1| DNA gyrase subunit B [Bacillus atrophaeus 1942]
 gi|310871170|gb|ADP34645.1| DNA gyrase subunit B [Bacillus atrophaeus 1942]
          Length = 638

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 287/588 (48%), Positives = 410/588 (69%), Gaps = 5/588 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q +SYD + IQ+L+GL+AV+KRP MYIG T+   GLHH+++E++DN+IDE+L GY   
Sbjct: 2   EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCSE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I + +  D S TV DNGRGIP  + ++ G  A EVIMT LHAGGKF+   YKVSGGLHGV
Sbjct: 61  INIEIEKDNSITVRDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L + + R+G I+  ++  G+    + V G   + TGT   F+P  +IF+
Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTGTITHFVPDPEIFT 179

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               ++YD L  R+REL+FL   V+I++ DKR  + ++    Y+GGI+++V YL+R K+ 
Sbjct: 180 ETTVYDYDLLSSRVRELAFLTKGVKITIEDKREEKEQKNEYCYEGGIKSYVEYLNRSKEV 239

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + + PI I+G++D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  
Sbjct: 240 VHEEPIYIEGTKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVIND 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K    K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  ++
Sbjct: 300 YARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSE 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +L E+P  A+ ++ K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP
Sbjct: 360 ALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG
Sbjct: 420 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M  +I NG++YI +PPLY
Sbjct: 480 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYIYIAQPPLY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            + +GK ++Y  +++ LE+ L     + +         G ++   L  
Sbjct: 539 KVQQGKRVEYAYNDKQLEEVLSTLPQTPKPGLQRYKGLGEMNATQLWE 586



 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 10/202 (4%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 442 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 499

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSL 722
               V    +      F +    + I +  I       L  +  G +++          +
Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMRQIIENGYIY-IAQPPLYKVQQGKRVEYAYNDKQLEEV 558

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L T+    + G+  QRYKGLGEMNA+QLWETT++PDTR+LL+V + DA  AD+ F  LMG
Sbjct: 559 LSTLPQTPKPGL--QRYKGLGEMNATQLWETTMDPDTRTLLQVTLEDAMDADETFEMLMG 616

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRR FI+ N+     LDI
Sbjct: 617 DKVEPRRNFIEANARYVKNLDI 638


>gi|81251094|gb|ABB69892.1| DNA gyrase subunit B [Nitrosovibrio sp. RY3C]
          Length = 559

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 328/548 (59%), Positives = 417/548 (76%), Gaps = 5/548 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   ++ Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EV+DNAIDE+L G+ D
Sbjct: 15  NPANSNDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGHCD 74

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            ITVT++ D S +V DNGRGIPT + +  E   SAAE++MT LHAGGKF+  SYKVSGGL
Sbjct: 75  EITVTIHPDNSVSVLDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGL 134

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I+R G  +++ F  G    PL + G      GTEV FL S  
Sbjct: 135 HGVGVSVVNALSEWLRLTIRRGGLTHQIEFRMGAPVAPLAILGKTE-RRGTEVHFLASKQ 193

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD    RLRELSFLN+ V+I L+D+R+ +    T  + GG+++FV Y++R K
Sbjct: 194 IFGDIEYHYDIFARRLRELSFLNNGVKIHLVDQRTGKE--ETFAFAGGVKSFVEYINRAK 251

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +    +G ++ I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR +
Sbjct: 252 TVLHPNIFYARGEKEGIVVEVSMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 311

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+EK+  SKK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR  VE  V
Sbjct: 312 NSYIEKNELSKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPAVEEIV 371

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              LS +L+E PL+AK I  K++DA+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+
Sbjct: 372 TQKLSDFLQERPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGLGLPGKLADCQEK 431

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   EL+LVEG SAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA
Sbjct: 432 DPALCELYLVEGGSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIISLITA 491

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PP
Sbjct: 492 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 551

Query: 541 LYGITRGK 548
           LY +  GK
Sbjct: 552 LYKVKHGK 559


>gi|81251082|gb|ABB69883.1| DNA gyrase subunit B [Nitrosospira sp. NIJS16]
          Length = 555

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 334/543 (61%), Positives = 422/543 (77%), Gaps = 5/543 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L G+ D I+V 
Sbjct: 16  ADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCDEISVI 75

Query: 68  LNMDGSCTVSDNGRGIPTDL-HKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           ++ D S TV DNGRGIPT + H +E   SAAE++MT LHAGGKF+  SYKVSGGLHGVGV
Sbjct: 76  IHPDNSVTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDSNSYKVSGGLHGVGV 135

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS WL+L I+REG I+++ F  G+   PL VTG     +GTEV FL S +IF   
Sbjct: 136 SVVNALSEWLRLSIRREGKIHQIEFRMGVPVAPLAVTGKTE-RSGTEVHFLASKEIFGDI 194

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +++YD    RLRELSFLN+ V+I L+D+R+ +    T  + GG+++FV Y++R K  L  
Sbjct: 195 EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--ETFAFVGGVKSFVEYVNRTKSVLHP 252

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +     G +D I +++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + +Y+E
Sbjct: 253 NIFYAAGEKDRIMVEVAMQWNDSYSEQVLCFTNNIPQKDGGTHLTGLRAAMTRTLNNYIE 312

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE  V+  L+
Sbjct: 313 KNDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIVSLKLA 372

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L EHP +AK I  K++DA+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+DP  S
Sbjct: 373 EFLLEHPSDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADCQEKDPALS 432

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI  LITALGTGI
Sbjct: 433 ELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIAALITALGTGI 492

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PPLY I 
Sbjct: 493 GKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPPLYKIK 552

Query: 546 RGK 548
            G+
Sbjct: 553 HGR 555


>gi|288561854|gb|ADC53563.1| DNA gyrase subunit beta [Acidovorax citrulli]
          Length = 764

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 320/768 (41%), Positives = 451/768 (58%), Gaps = 54/768 (7%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85
           P MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT  
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 86  ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
              D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++R+
Sbjct: 61  KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119

Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           G ++ + F             NG+  +P+ VTG   +  GTEV FLP ++IF   + F+Y
Sbjct: 120 GKVHLLEFSQGFVQSRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHY 178

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  RLRELSFLN+ V+I L D+R+ +         GG+  FV +++  KK L  +   
Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGGVMGFVQFINASKKVLHPNAFH 236

Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDG--GTHLSGLRSALT 297
             GSR            I +++AM+WNDG++E+    +             L+GLR+A+T
Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESRCFASPPTTSPHATAAPTLTGLRAAMT 296

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE
Sbjct: 297 RVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVE 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++TRRKGVLD   LPGKLADC
Sbjct: 357 DIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADC 416

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TL
Sbjct: 417 QEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTL 476

Query: 478 ITALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ITALGTGIG+           D F+++KLRY +IIIMTDADVDGAHIRTLLLTFF+RQMP
Sbjct: 477 ITALGTGIGKASADGTGKGGADDFNVDKLRYRRIIIMTDADVDGAHIRTLLLTFFYRQMP 536

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKN 585
            L+  G +YI +PPLY +  GK   Y+KD  +L+ +L+  +L    +    +    +   
Sbjct: 537 ELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQARTLDGE 596

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF- 644
            L          + +I+      D+  +         N ++ ++   S  +  A      
Sbjct: 597 TLSTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDAEASAVALQAKLRELT 656

Query: 645 ---IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
              +  +    +    +   + + R   G  +  ++    +           ++      
Sbjct: 657 TTGVPAEVAGEFDARTDKPVLRISRRHHGNIKSSIITQDFVHGADYAALAEAAHTFRGLL 716

Query: 702 LTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
                ++        + K++     +  +     +  S QRYKGLGEM
Sbjct: 717 GEGAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSRQRYKGLGEM 764


>gi|81251066|gb|ABB69871.1| DNA gyrase subunit B [Nitrosospira sp. PJA1]
          Length = 555

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 332/548 (60%), Positives = 424/548 (77%), Gaps = 5/548 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            +  ++ Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L G+ D
Sbjct: 11  KSKSSTDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCD 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            I+V ++ D S TV DNGRGIPT + +  E   SAAE++MT LHAGGKF+  SYKVSGGL
Sbjct: 71  EISVIIHPDNSITVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I+R+G I+++ F  G+   PL  TG      GTEV FL S +
Sbjct: 131 HGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVAPLAATGKTE-RRGTEVHFLASKE 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD    RLRELSFLN+ V+I L+D+R+ +    T  + GG+++FV Y++R K
Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--ETFAFVGGVKSFVEYVNRTK 247

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +     G +D I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR +
Sbjct: 248 SVLHPNIFYATGEKDRIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+EKS  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE  V
Sbjct: 308 NNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIV 367

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +L EHP++AKII  K+++A+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+
Sbjct: 368 SLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA
Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITA 487

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PP
Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547

Query: 541 LYGITRGK 548
           LY I  GK
Sbjct: 548 LYKIKHGK 555


>gi|167461556|ref|ZP_02326645.1| DNA gyrase subunit B [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381377|ref|ZP_08055380.1| DNA gyrase subunit B-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154953|gb|EFX47224.1| DNA gyrase subunit B-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 636

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 299/646 (46%), Positives = 425/646 (65%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  +  ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE+L G+
Sbjct: 1   MT--LNQNTYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEVVDNSIDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV DNGRGIP   H +      EV++T LHAGGKF  + YKVSGGL
Sbjct: 58  CTKIDVTIHEDNSITVIDNGRGIPVGEHPKLKKPTLEVVLTVLHAGGKFGGEGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L   +KR+G+IY+  F  G+    + V G      GT +TF P ++
Sbjct: 118 HGVGVSVVNALSESLVATVKRDGHIYQQEFKRGVPQYGVKVIGDTDEY-GTVITFKPDAE 176

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    ++Y+ LQ R+REL+FLN  ++I+L D+R+          +GGI +FV YL+++
Sbjct: 177 IFTETTVYDYEVLQSRIRELAFLNKELEINLKDERTGASHSYKY--EGGIISFVEYLNQN 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++PL Q PI ++G++DNI +++A+++ND ++EN+  F NNI   +GGTH SG +SALTR 
Sbjct: 235 REPLNQPPIYVEGNKDNIQVEIAIQYNDNFNENIYSFANNIHTHEGGTHESGFKSALTRV 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K    ++ GDD REG  +++S+K+PDP+F  QTK KL +SEVR +VES 
Sbjct: 295 INDYARKTNVLKDSNSNLSGDDVREGIAAIISVKIPDPQFEGQTKTKLGNSEVRGIVESL 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +LEE+P  AK I++K + A+  R+AAR+AR+LTRRK  L+++SLPGKLADCS 
Sbjct: 355 LAEKLQEFLEENPSTAKRIMEKSMQAARAREAARKARELTRRKSALEVSSLPGKLADCSS 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++LS+ EI  +IT
Sbjct: 415 KDAAISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNMEIRAIIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGI  + FD++K RYHKIIIMTDADVDGAHIRTLLLTFFFR M  LI  G++YI +P
Sbjct: 475 ALGTGI-SEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRKLIEAGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKID 598
           PLY + + K+++Y  +++   + +       ++        G ++   L         +D
Sbjct: 534 PLYKLEKNKTVRYAYNDKQRAEIMKEFGEGSKVNVQRYKGLGEMNAGQLWET-----TMD 588

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +     + +  I+   I  +   ++ +     +        N 
Sbjct: 589 PESRTLLQVNIEDAIKADAIFDMLMGDNVEPRRNFIHEHAKYVTNL 634



 Score =  170 bits (431), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 4/199 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++   +  +     + +  S      ++  
Sbjct: 440 RHFQAIL--PLRGKILNVEKARLDRILSNMEIRAIITALGTGISEDFDLSKARYHKIIIM 497

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F F    K I +  +      +  L  N             + +
Sbjct: 498 TDADVDGAHIRTLLLTFFFRYMRKLIEAGYVYIAQPPLYKLEKNKTVRYAYNDKQRAEIM 557

Query: 727 FSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
              G    +++QRYKGLGEMNA QLWETT++P++R+LL+V I DA +AD +F  LMGD V
Sbjct: 558 KEFGEGSKVNVQRYKGLGEMNAGQLWETTMDPESRTLLQVNIEDAIKADAIFDMLMGDNV 617

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRR FI E++     LD+
Sbjct: 618 EPRRNFIHEHAKYVTNLDV 636


>gi|81251043|gb|ABB69854.1| DNA gyrase subunit B [Nitrosospira multiformis]
          Length = 555

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 334/548 (60%), Positives = 425/548 (77%), Gaps = 5/548 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            +  ++ Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L GY D
Sbjct: 11  KSKSSADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYCD 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            I+V ++ D S TV DNGRGIPT + +  E   SAAE++MT LHAGGKF+  SYKVSGGL
Sbjct: 71  EISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I+R+G I+++ F  G+   PL  TG      GTEV FL S +
Sbjct: 131 HGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVGPLATTGKTE-RRGTEVHFLASKE 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD    RLRELSFLN+ V+I LID+R+ +    T  + GG+++FV Y++R K
Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLIDQRNAKE--ETFAFVGGVKSFVEYVNRTK 247

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +     G +D I+++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR +
Sbjct: 248 SVLHPNIFYAAGEKDRIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+EKS  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE  V
Sbjct: 308 NNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIV 367

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +L EHP++AKII  K+++A+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+
Sbjct: 368 SLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA
Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITA 487

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PP
Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547

Query: 541 LYGITRGK 548
           LY I  GK
Sbjct: 548 LYKIKHGK 555


>gi|260887491|ref|ZP_05898754.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
 gi|330837873|ref|YP_004412453.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
 gi|260862778|gb|EEX77278.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
 gi|329745637|gb|AEB98993.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
          Length = 690

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 308/581 (53%), Positives = 407/581 (70%), Gaps = 5/581 (0%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A+ IQIL+GL+AV+KRP MYIG T  E GLHH++YEV+DN+IDE+L GY D I VT+
Sbjct: 63  DYGANQIQILEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALAGYCDHIDVTI 121

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D S TV DNGRGIP D+H E G  A EV++T LHAGGKF  + YKVSGGLHGVGVSVV
Sbjct: 122 EKDNSITVVDNGRGIPVDMH-ESGKPAVEVVLTVLHAGGKFGGEGYKVSGGLHGVGVSVV 180

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ + + +KR+G I+ + F  G+   PL V G     TGT+V F+P  +IF+V  ++
Sbjct: 181 NALSTSMDVEVKRDGKIHSIRFEQGVTAAPLTVIGETE-KTGTKVHFVPDPEIFTVTQYS 239

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +DTL+HRLREL+FLN  + I L+DKR  E RE + FY+GGI +FV +L+R K+ +  +PI
Sbjct: 240 FDTLKHRLRELAFLNQGITIRLVDKR-GEGREESYFYEGGIRSFVEHLNRKKEVIHPTPI 298

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
              G +D+  +++AM++ND Y EN+  F NNI  ++GGTHL+G + ALTR    +  K  
Sbjct: 299 YFNGIKDDTVVEIAMQYNDSYMENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARKQG 358

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K    ++ G+D REG T V+S+K+ +P+F  QTK KL +SEVR +V+S V +GL+ + 
Sbjct: 359 ILKDKDGNLSGEDVREGLTCVISLKIHEPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYF 418

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P   K +++K + AS  R+AAR+AR+LTRRK  L+++SLPGKLADCS +DP+++E++
Sbjct: 419 EENPAITKKVIEKAIMASRAREAARKARELTRRKNALEVSSLPGKLADCSIKDPEQAEIY 478

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+ ++ EI T+ITA GTGI  D
Sbjct: 479 LVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-SD 537

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI K RY KIIIMTDADVDG+HIRTLLLTFF+R M  LI  G +YI +PPLY I +GK
Sbjct: 538 DFDIAKRRYGKIIIMTDADVDGSHIRTLLLTFFYRYMKPLIERGHVYIAQPPLYQIRKGK 597

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
              Y   ++ L   L                G ++   L  
Sbjct: 598 KHWYTYSDDELAQKLNEVGRDNATVQRYKGLGEMNPEQLWE 638



 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +          +  +      ++      V    +    
Sbjct: 507 ILNVEKARLDKIFANAEIRTMITAFGTGISDDFDIAKRRYGKIIIMTDADVDGSHIRTLL 566

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGISMQRY 739
             F +      I    +       L  I  G K         L   +  +GR   ++QRY
Sbjct: 567 LTFFYRYMKPLIERGHVY-IAQPPLYQIRKGKKHWYTYSDDELAQKLNEVGRDNATVQRY 625

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QLWETT++P+ R++L+V++ DA +AD+LF+ LMGD+VEPRR+FI+E++   
Sbjct: 626 KGLGEMNPEQLWETTMDPEGRTMLQVRMEDAEEADELFTILMGDKVEPRRQFIEEHAKHV 685

Query: 800 -ALDI 803
             LDI
Sbjct: 686 RNLDI 690


>gi|1790875|gb|AAB41130.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824]
          Length = 637

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 290/592 (48%), Positives = 419/592 (70%), Gaps = 10/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N  YD   IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DN+IDE+L GY
Sbjct: 1   MSEK--NEIYDESQIQVLEGLEAVRKRPGMYIG-TTGTRGLHHLVYEIVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TVSD+GRG+P  +H +      EVIMT LHAGGKF   +Y+VSGGL
Sbjct: 58  CSHIKVFIHKDNSVTVSDDGRGMPIGIHHKMKKPTVEVIMTILHAGGKFGGGAYRVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS   ++ +K EG+I++ ++  G + +P    G + ++ GT++ F P  +
Sbjct: 118 HGVGASVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFEKIGDS-DEHGTKIYFKPDPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YDTL  RLREL+FLN  ++I L D+R  +       Y+GG+++FVSYL+R+K
Sbjct: 177 IFEDTEYDYDTLSQRLRELAFLNKGIKIELTDERHDKN--EIFHYEGGLKSFVSYLNRNK 234

Query: 241 KPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + + + PI ++GS   N S+++A+++NDGY+EN+  F NNI   +GGTHL+G ++ALTR 
Sbjct: 235 EVVFKEPIYVEGSIDSNYSVEIALQYNDGYNENIFSFANNIHTIEGGTHLAGFKTALTRV 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y +K    K++ +++ G+D REG T+V+S+K+ +P+F  QTK KL ++EVR +V+S 
Sbjct: 295 INDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIVDSI 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +++ +S +LEE+P   K+++ K L AS  R+AA++AR++TRRK VL+  SLPGKLADCS 
Sbjct: 355 ISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLADCSS 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D ++ E+++VEGDSAGGSAKQGR+R  QAILPLRGKI+NVE+ R DK+L+S+EI  + T
Sbjct: 415 KDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKAMAT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A G GIG+D FD++KLRYHKIIIMTDADVDGAHIRTL+LTFF+R M  LI  G ++I +P
Sbjct: 475 AFGGGIGKD-FDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           PLY +T+ +   Y   ++ LED L +    ++          G ++   L  
Sbjct: 534 PLYKVTKTRKEYYAYSDKELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWE 585



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 14/203 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+  I  + N E  + +  +    +    +    +  K           +
Sbjct: 446 LPLRGKIMNVEKQRIDKILNSEEIKAMATAFGGGIGKDFDVSKLRYHK-----------I 494

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F +    + I    +      +  +     +        L 
Sbjct: 495 IIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSDKELE 554

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           D +  +G K     +QRYKGLGEMN  QLWETT+NP+ R+L++V I DA  AD++F+ LM
Sbjct: 555 DVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIFTILM 614

Query: 782 GDEVEPRREFIQENS-LPSALDI 803
           GD+V+PRR+FI+EN+     LD+
Sbjct: 615 GDKVDPRRKFIEENATKVVNLDV 637


>gi|81251051|gb|ABB69860.1| DNA gyrase subunit B [Nitrosospira sp. HBN8222A]
 gi|81251059|gb|ABB69866.1| DNA gyrase subunit B [Nitrosospira sp. TCH711]
 gi|81251063|gb|ABB69869.1| DNA gyrase subunit B [Nitrosospira sp. TCH716]
          Length = 555

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 333/548 (60%), Positives = 425/548 (77%), Gaps = 5/548 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            +  ++ Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L GY D
Sbjct: 11  KSKSSTDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYCD 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            I+V ++ D S TV DNGRGIPT + +  E   SAAE++MT LHAGGKF+  SYKVSGGL
Sbjct: 71  EISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I+R+G ++++ F  G+   PL VTG      GTEV FL S +
Sbjct: 131 HGVGVSVVNALSEWLRLSIRRDGKVHQIEFRMGVPMTPLAVTGKTE-RRGTEVHFLASKE 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD    RLRELSFLN+ V+I L+D+R+ +    T  + GG+++FV Y++R K
Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--ETFAFVGGVKSFVEYVNRTK 247

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L  +     G +D I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR +
Sbjct: 248 SVLHPNIFYAAGEKDRIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+EKS  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE  V
Sbjct: 308 NNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIV 367

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +L EHP++AKII  K+++A+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+
Sbjct: 368 SLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA
Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITA 487

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PP
Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547

Query: 541 LYGITRGK 548
           LY I  GK
Sbjct: 548 LYKIKHGK 555


>gi|254230346|ref|ZP_04923732.1| DNA gyrase, B subunit [Vibrio sp. Ex25]
 gi|151937138|gb|EDN56010.1| DNA gyrase, B subunit [Vibrio sp. Ex25]
          Length = 563

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 320/522 (61%), Positives = 415/522 (79%), Gaps = 8/522 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 56  CKDIVVTIHEDNSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PS++
Sbjct: 116 HGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV +L+ +K
Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADK-HDHFMYEGGIQAFVDHLNTNK 233

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 234 TPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRT 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF
Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFF 515


>gi|125974861|ref|YP_001038771.1| DNA gyrase subunit B [Clostridium thermocellum ATCC 27405]
 gi|256003883|ref|ZP_05428870.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 2360]
 gi|281418684|ref|ZP_06249703.1| DNA gyrase, B subunit [Clostridium thermocellum JW20]
 gi|125715086|gb|ABN53578.1| DNA gyrase subunit B [Clostridium thermocellum ATCC 27405]
 gi|255992221|gb|EEU02316.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 2360]
 gi|281407768|gb|EFB38027.1| DNA gyrase, B subunit [Clostridium thermocellum JW20]
 gi|316939072|gb|ADU73106.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 1313]
          Length = 641

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 305/646 (47%), Positives = 428/646 (66%), Gaps = 14/646 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N + S YD  +IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+ + 
Sbjct: 5   NNEMSKYDESNIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIMDNSIDEALAGFCNE 63

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S T  DNGRGIP  +H + GIS  EV+ T LHAGGKF+ + YKVSGGLHGV
Sbjct: 64  IKVIIHKDNSITNIDNGRGIPVGIHPKLGISTVEVVHTILHAGGKFDGQGYKVSGGLHGV 123

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS +L++ + R+G+IY   +  G    P+ + G   N TGT+ TF P  +IF 
Sbjct: 124 GASVVNALSEFLEVEVFRDGHIYRQRYERGKPVTPVEIIGDT-NLTGTKTTFKPDPEIFE 182

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V +F+++ L  RLREL+FLN  ++I L D+R  EP E  + Y+GGI +FV Y+DR+K PL
Sbjct: 183 VTEFDFEVLLTRLRELAFLNKGLKIILRDERPEEPVEKHLHYEGGIVSFVEYMDRNKDPL 242

Query: 244 MQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              PI   G +D   +++AM++N D Y EN+  F NNI   +GGTHL+G ++A+T+ +  
Sbjct: 243 H-EPIYFDGYKDGCYVEIAMQYNKDVYVENIHSFANNISTAEGGTHLTGFKTAITKVLND 301

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K    K++ ++++G+D REG T+V+S+K+PDP+F  QTK KL +SEVRS VES +N+
Sbjct: 302 YAKKFNFLKENDKNLLGEDVREGLTAVISVKIPDPQFEGQTKTKLGNSEVRSFVESIINE 361

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             +++LEE+P   ++I+ K + ++  R+AAR+AR+LTRRK VL+ ++LPGKLADC+ERDP
Sbjct: 362 KFASFLEENPSVTRLILDKCIMSARAREAARKARELTRRKNVLETSTLPGKLADCTERDP 421

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
              E+F+VEGDSAGGSAKQGR+R  QAILPL GK+LNVE+AR DK+  + ++  +I ALG
Sbjct: 422 SLCEIFIVEGDSAGGSAKQGRNRRFQAILPLWGKMLNVEKARVDKVYGNDKLTPVIMALG 481

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           T IG   FDI KLRYHKIIIM DADVDGAHIRTLLLTFF+R M  LI NG++YI +PPLY
Sbjct: 482 TNIG-QDFDITKLRYHKIIIMADADVDGAHIRTLLLTFFYRYMTPLITNGYVYIAQPPLY 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALKIDKL 600
            IT+GK+  Y  ++  LE  +      +E          G ++   L         +D  
Sbjct: 541 KITKGKTELYAYNDSELEKIIRENQWKKEECTIQRFKGLGEMNPEQLWTT-----TMDPE 595

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA--SKLANRLNF 644
            +       +  I    I  +   +  +     +   +KL   L+ 
Sbjct: 596 TRTILRVELEDAIAADEIFTILMGDKVEPRKEFIQANAKLVTNLDI 641



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 5/128 (3%)

Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG---RKGISM 736
            + +F  +Y   + +N         L  I  G         S L+ I       ++  ++
Sbjct: 514 LLLTFFYRYMTPLITNGYVYIAQPPLYKITKGKTELYAYNDSELEKIIRENQWKKEECTI 573

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QR+KGLGEMN  QLW TT++P+TR++LRV++ DA  AD++F+ LMGD+VEPR+EFIQ N+
Sbjct: 574 QRFKGLGEMNPEQLWTTTMDPETRTILRVELEDAIAADEIFTILMGDKVEPRKEFIQANA 633

Query: 797 -LPSALDI 803
            L + LDI
Sbjct: 634 KLVTNLDI 641


>gi|81251086|gb|ABB69886.1| DNA gyrase subunit B [Nitrosospira sp. NIJS18]
          Length = 555

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 333/543 (61%), Positives = 422/543 (77%), Gaps = 5/543 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L G+ D I+V 
Sbjct: 16  ADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCDEISVI 75

Query: 68  LNMDGSCTVSDNGRGIPTDL-HKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           ++ D S TV DNGRGIPT + H +E   SAAE++MT LHAGGKF+  SYKVSGGLHGVGV
Sbjct: 76  IHPDNSVTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDSNSYKVSGGLHGVGV 135

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS WL+L I+REG I+++ F  G+   PL VTG   + +GTEV FL S +IF   
Sbjct: 136 SVVNALSEWLRLSIRREGKIHQIEFRMGVPVAPLAVTGKTEH-SGTEVHFLASKEIFGDI 194

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +++YD    RLRELSFLN+ V+I L+D+R+ +    T  + GG+++FV Y++R K  L  
Sbjct: 195 EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--ETFAFVGGVKSFVEYVNRTKSVLHP 252

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +     G +D I +++AM+WND Y E VLCFTNNIPQKD GTHL+GLR+A+TR + +Y+E
Sbjct: 253 NIFYAAGEKDRIMVEVAMQWNDSYSEQVLCFTNNIPQKDRGTHLTGLRAAMTRTLNNYIE 312

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE  V+  L+
Sbjct: 313 KNDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIVSLKLA 372

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L EHP +AK I  K++DA+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+DP  S
Sbjct: 373 EFLLEHPSDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADCQEKDPALS 432

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI  LITALGTGI
Sbjct: 433 ELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIAALITALGTGI 492

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PPLY I 
Sbjct: 493 GKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPPLYKIK 552

Query: 546 RGK 548
            G+
Sbjct: 553 HGR 555


>gi|81251106|gb|ABB69901.1| DNA gyrase subunit B [Nitrosomonas sp. OZK11]
          Length = 554

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 335/545 (61%), Positives = 419/545 (76%), Gaps = 5/545 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
                 Y++DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EV+DNAIDE+L GY D 
Sbjct: 13  ESNQRDYNSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGYCDD 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           I+VT++ D S ++ DNGRGIPTD+ +  E   SAAE++MT LHAGGKF+  SYKVSGGLH
Sbjct: 73  ISVTIHADNSVSIHDNGRGIPTDIKQDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGLH 132

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WL+L I R G++++M F +G+   PL VTG      GTEV FL S  +
Sbjct: 133 GVGVSVVNALSEWLRLTIHRNGHVHQMEFRDGVAVAPLKVTGQTE-KHGTEVHFLASQSV 191

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    ++Y+    RLRELSFLN  ++I L+D R  + RE T  + GGI  FV Y++R K 
Sbjct: 192 FGDVTYHYEIFAKRLRELSFLNHGIKIRLVDLR--DDREETFAFTGGIRNFVEYINRSKN 249

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L  +    QG +DNI++++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + 
Sbjct: 250 VLHPNIFYAQGLKDNITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMTRTLN 309

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+EK+  ++K K    GDD REG T VLS+K+ +P+FSSQTKEKLVSSEVR VVE  V 
Sbjct: 310 NYIEKNELARKAKVDTTGDDMREGMTCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIVT 369

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             LS +L E+P EAKII  K++DA+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+D
Sbjct: 370 QKLSDFLLENPNEAKIICNKIIDAARAREAARKARELTRRKGVLDSMGLPGKLADCQEKD 429

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PK  EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++SSQEI +LITAL
Sbjct: 430 PKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLISSQEIVSLITAL 489

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI +PPL
Sbjct: 490 GTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPL 549

Query: 542 YGITR 546
           Y I  
Sbjct: 550 YKIKH 554


>gi|313674412|ref|YP_004052408.1| DNA gyrase subunit b [Marivirga tractuosa DSM 4126]
 gi|312941110|gb|ADR20300.1| DNA gyrase subunit B [Marivirga tractuosa DSM 4126]
          Length = 653

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 294/604 (48%), Positives = 406/604 (67%), Gaps = 17/604 (2%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS   + +N  Y A +I +L+GL+AV+KRP+MYIGD  G  GLHHMI+EV+DN+IDE++ 
Sbjct: 1   MSTEKDNKNKDYSAGNITVLEGLEAVRKRPAMYIGDV-GVKGLHHMIWEVVDNSIDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   ITV +N D S TV D+GRGIP D+H++EG SA EV+MT LHAGGKF++ SYKVSG
Sbjct: 60  GHCTTITVEINEDNSVTVMDDGRGIPVDIHEKEGRSALEVVMTVLHAGGKFDKDSYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GLHGVGVS VNALS+ LK  +  R+G IYE  +  G    P+   G   + TGT++ F P
Sbjct: 120 GLHGVGVSCVNALSTMLKATVYSRDGKIYEQEYSEGFPKEPVKPVGET-DVTGTKIQFKP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
            + IF   +F Y+T+  RLREL++LN+ ++I L D R    + + +E   F +GG+  FV
Sbjct: 179 DASIFMETEFKYETVASRLRELAYLNAGIKIKLQDHRDKDENGDSKEENFFSEGGLLEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YLD  ++ L+  PI ++G ++ + + +A+ +N  Y ENV+ + NNI   +GGTH+SG R
Sbjct: 239 EYLDVSREKLIPQPIYMEGEKNGVPVQVALNYNTSYSENVVSYVNNINTIEGGTHVSGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + SY +KS   +K K  + GDD REG T+++S+K+ +P+F  QTK KL +S+V 
Sbjct: 299 RALTRTLKSYADKSGLLEKQKIEITGDDFREGLTAIISVKVAEPQFEGQTKTKLGNSDVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VES V++ L  +LEE+P  AK IV+KV+ A+  R+AA++AR++ +RK V+  + LPGK
Sbjct: 359 GAVESCVSETLQYFLEENPKAAKTIVQKVILAAQARNAAKKAREMVQRKNVMSGSGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCSE+DP   EL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A+  K+  + E
Sbjct: 419 LADCSEKDPSICELYLVEGDSAGGSAKQGRDRNFQAILPLKGKILNVEKAQEHKIYDNDE 478

Query: 474 IGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  ++TALG   G +  +      KLRYHKI+IMTDADVDG+HIRTL+LT FFR M  LI
Sbjct: 479 IKNILTALGVRFGTEDDEKALNLEKLRYHKIVIMTDADVDGSHIRTLILTLFFRYMRELI 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE----IELFCDSKGVISKN 585
             G++YI +PPLY I RGK+ +YV  E+   + +   S                G ++  
Sbjct: 539 DMGYVYIAQPPLYLIKRGKTERYVFTEDERVEVVKEISPDGTEGAVHLQRYKGLGEMNPE 598

Query: 586 DLRN 589
            L  
Sbjct: 599 QLWT 602



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E  QE  +    ++ N L  +      E  EK+ +        +V      V    
Sbjct: 462 ILNVEKAQEHKIYDNDEIKNILTALGVRFGTEDDEKALNLEKLRYHKIVIMTDADVDGSH 521

Query: 676 VLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNGD-KIKITGPCSLLDTIFSIGRKG 733
           +   + I +   +Y R   +          L LI  G  +  +      ++ +  I   G
Sbjct: 522 I--RTLILTLFFRYMRELIDMGYVYIAQPPLYLIKRGKTERYVFTEDERVEVVKEISPDG 579

Query: 734 ----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
               + +QRYKGLGEMN  QLW TT++P TR + +V +  A++AD LFS LMGDEV PRR
Sbjct: 580 TEGAVHLQRYKGLGEMNPEQLWTTTMDPHTRKMKQVSVESAAEADHLFSMLMGDEVPPRR 639

Query: 790 EFIQENSLPSALDI 803
           +FI++N+  + +DI
Sbjct: 640 DFIEKNAKYAKIDI 653


>gi|288574018|ref|ZP_06392375.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569759|gb|EFC91316.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 637

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 299/646 (46%), Positives = 405/646 (62%), Gaps = 13/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S Y A SIQIL+GL+AV+KRP MYIGDT    GLHH +YEV+DNA+DE+L GY
Sbjct: 1   MTATSAQSQYTAQSIQILEGLEAVRKRPGMYIGDT-ATRGLHHCVYEVVDNAVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ DGS +VSDNGRGIP D H   G  A EV++T LHAGGKFN  +YKVSGGL
Sbjct: 60  CSEIKVTIHTDGSVSVSDNGRGIPVDPHPSNGRPACEVVLTVLHAGGKFNNDTYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSSWL+L I R G  +   F  GI    L   G   + +GT V F+P  +
Sbjct: 120 HGVGVSVVNALSSWLELDICRNGKTWGQRFEKGIPVTDLE-GGYETDKSGTTVHFMPDDE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+ + L +RLRE++FL   ++I+LID R  +    T  Y+GG+ +FV YL+R K
Sbjct: 179 IFEEVCFSAEILGNRLREMAFLIPGLKITLIDDREEKEW--TFHYEGGLASFVEYLNRDK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L   PI + G RD+I +++ +++NDGYHE +  F N I   +GGTH+ GLRSA+TR I
Sbjct: 237 SSLFPKPIVVSGERDSIFVEVGLQYNDGYHERLFSFANLIHTMEGGTHVIGLRSAITRAI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
                ++   K    ++ G+D +EG T V+S+K+ DP+F  QTK KL +SEV+ +V+S V
Sbjct: 297 NESARRNKVLKDKDANLSGEDLKEGLTCVISVKLGDPQFEGQTKTKLGNSEVKGIVDSIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +GL   L+E P   K +V K + A   R+AA++AR+L  RK  +   +LPGKLADCS R
Sbjct: 357 YEGLLVALDEDPSVLKPVVDKAVKARQAREAAKKARELV-RKTAMTGLNLPGKLADCSGR 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
            P+  E+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++LSS+EI T+I A
Sbjct: 416 IPENCEVYIVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKARLDRILSSKEIRTIIQA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D FD  KLRYHKIIIMTDADVDGAHI TLLLTFF+R M  L+  G++Y+ +PP
Sbjct: 476 LGCGIGED-FDTTKLRYHKIIIMTDADVDGAHISTLLLTFFYRYMKELVEGGYIYLAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDDALKID 598
           LY +  G+  +Y+  ++ L  ++ +   + +          G ++   L         +D
Sbjct: 535 LYRVQIGRHSEYIFSDKDLRTFMNSHKDTGKKIGVQRYKGLGEMNPEQLWET-----TMD 589

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +          +       +   +  +     + +      N 
Sbjct: 590 PENRVMKRIEVDDALAADEYFSILMGDKVEPRREFIQAHSHEVQNL 635



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 2/88 (2%)

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               + +++    G+K I +QRYKGLGEMN  QLWETT++P+ R + R+++ DA  AD+ 
Sbjct: 551 KDLRTFMNSHKDTGKK-IGVQRYKGLGEMNPEQLWETTMDPENRVMKRIEVDDALAADEY 609

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           FS LMGD+VEPRREFIQ +S     LD+
Sbjct: 610 FSILMGDKVEPRREFIQAHSHEVQNLDV 637


>gi|313902779|ref|ZP_07836176.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965]
 gi|313466899|gb|EFR62416.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965]
          Length = 635

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 294/589 (49%), Positives = 399/589 (67%), Gaps = 5/589 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + YD   IQ+L+GL+AV++RP MYIG T G  GLHH+I+EV+DNA+DE+L G    I
Sbjct: 1   MARTGYDESQIQVLEGLEAVRRRPGMYIGST-GPRGLHHLIWEVVDNAVDEALAGRCTAI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVTL+ DGSC+V DNG GIP  +H + G    EV++T LHAGGKF+ ++YKVSGGLHGVG
Sbjct: 60  TVTLHADGSCSVRDNGGGIPVGIHPKVGKPTVEVVLTMLHAGGKFDGQAYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSVVNALS WL++ ++REG I+   +  G  +  L V G+   +DTGT V F P  +IF 
Sbjct: 120 VSVVNALSEWLEVEVRREGRIHRQRYRRGQPETGLEVVGTTAADDTGTYVRFKPDPEIFE 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F YD +  RLRE++ LNS + I L D+R+ E       + GG+ +FV+ L+R K+ L
Sbjct: 180 ETEFKYDVVVGRLREIALLNSGLYIELRDERTGERN--LFQFMGGLRSFVALLNRTKEAL 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI  +  RD + +++A++W   Y E +  F N I   +GGTH +G + ALTR +  Y
Sbjct: 238 HPEPISYKAERDGVEVEMALQWTTSYVETLYSFANTIHTHEGGTHEAGFKMALTRVVNDY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K    ++ GDD REG T+VLS+K+P+P+F  QTK KL +SEVR VV+S   + 
Sbjct: 298 ARKANLLKNGDENLAGDDIREGLTAVLSVKLPEPQFEGQTKTKLGNSEVRGVVDSVTGEA 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ + EE+P  A+ +V+K + A   R+AAR+AR+LTRRK  L++ +LPGKL DC+ RDP 
Sbjct: 358 LATYFEENPQVARRVVEKAITAMRAREAARKARELTRRKSALEVTALPGKLTDCTVRDPA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELF+VEGDSAGGSAKQGR R  QA+LPLRGKILNVE+AR DK+L+  EI  LITA+GT
Sbjct: 418 MAELFIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDKILAHDEIRALITAIGT 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG D FDI++ RYHKII+MTDADVDGAHIRTLLLTFFFR M  LI  G++YI +PPLY 
Sbjct: 478 GIG-DEFDIHRARYHKIILMTDADVDGAHIRTLLLTFFFRYMRPLIEAGYVYIAQPPLYL 536

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           + +GK   Y  D++ LE +          + F     + ++      ++
Sbjct: 537 VRQGKEEHYFYDDDQLEAFFRQVGKRMPAQRFKGLGEMNAEQLWETTMN 585



 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 2/183 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  I       +         ++      V    +    
Sbjct: 451 ILNVEKARLDKILAHDEIRALITAIGTGIGDEFDIHRARYHKIILMTDADVDGAHIRTLL 510

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I +  +      +  +    ++        L      +G++ +  QR+K
Sbjct: 511 LTFFFRYMRPLIEAGYVYIAQPPLYLVRQGKEEHYFYDDDQLEAFFRQVGKR-MPAQRFK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800
           GLGEMNA QLWETT+NP+TR+LL+V + DA  AD +FS LMG  VEPRREFI++++    
Sbjct: 570 GLGEMNAEQLWETTMNPETRTLLQVTLEDAMAADQIFSILMGSRVEPRREFIEQHARKVR 629

Query: 801 -LD 802
            LD
Sbjct: 630 FLD 632


>gi|302388606|ref|YP_003824427.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646]
 gi|302199234|gb|ADL06804.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646]
          Length = 637

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 308/643 (47%), Positives = 412/643 (64%), Gaps = 14/643 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + + YD   I++L+GL+ V+ RP MYIG TD   GLHH++YEV+DN+IDE+L G+   I 
Sbjct: 3   KKTVYDETKIEVLEGLEHVRLRPGMYIGSTDS-RGLHHLVYEVVDNSIDEALAGFCKNIL 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+N DGS TV D+GRGIP  +H + G  A EV +T LHAGGKF    YKVSGGLHGVGV
Sbjct: 62  VTINKDGSITVDDDGRGIPVKIHPKVGKPALEVALTMLHAGGKFGTGGYKVSGGLHGVGV 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS WL++ +KR+G  Y   +  G     +   G A  DTGT++TF+P   IF   
Sbjct: 122 SVVNALSKWLEVEVKRDGFKYFQRYERGKPVTEVKKIGEAS-DTGTKITFMPDDQIFEDT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FNYD L  RLRE +FLN  ++I + D R+ + +     Y+GGI +FV YL+R+K  L +
Sbjct: 181 SFNYDILAQRLREQAFLNRGLKIEIKDLRTGKEQ--VFHYEGGIVSFVKYLNRNKDVLHE 238

Query: 246 SPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            PI ++         +++A+++ND Y ENVL F NNI  ++GGTHL G +SALTR I  Y
Sbjct: 239 DPIYMRAASQEGEWEVEVALQYNDSYAENVLSFANNINTQEGGTHLVGFKSALTRSINDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K    K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL +SE+R +VES V D 
Sbjct: 299 ARKMNLLKEQDPNLSGDDVREGLTAVISVKLVNPQFEGQTKTKLGNSEMRGIVESVVGDA 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           ++ +LEE+P  A++IV+K + A+  R+AAR+AR+L RRK  LD  SLPGKLADC E+DP+
Sbjct: 359 MNRFLEENPSVARVIVEKAISAARAREAARKARELVRRKNALDRTSLPGKLADCREKDPR 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             EL+LVEGDSAGGSAKQGR    QAILPLRGKILNVE+AR DK+L ++EI  +ITALGT
Sbjct: 419 LCELYLVEGDSAGGSAKQGRDPRFQAILPLRGKILNVEKARLDKILGNEEIRAMITALGT 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG D FDI KLRYHKII+M DADVDGAHIRTLLLTF +R M  LI  G +YI +PPLY 
Sbjct: 479 GIG-DDFDIEKLRYHKIILMADADVDGAHIRTLLLTFLYRYMRPLIEAGMVYIAQPPLYQ 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSE--EIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           +++GK + Y   +E L+  L                  G ++ + L +       ++   
Sbjct: 538 VSKGKEVYYAYSDEELKAILERLGKDRDKAEVKRFKGLGEMNADQLWDT-----TMNPKT 592

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +     + +  IE   I  +   E  +     +    A   N 
Sbjct: 593 RTILKVNLEDAIEADEIFTILMGEKVEPRRQFIFEHAAEVRNL 635



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 5/128 (3%)

Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IG--RKGISM 736
            + +F  +Y R +    +       L  +  G ++        L  I   +G  R    +
Sbjct: 510 LLLTFLYRYMRPLIEAGMVYIAQPPLYQVSKGKEVYYAYSDEELKAILERLGKDRDKAEV 569

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +R+KGLGEMNA QLW+TT+NP TR++L+V + DA +AD++F+ LMG++VEPRR+FI E++
Sbjct: 570 KRFKGLGEMNADQLWDTTMNPKTRTILKVNLEDAIEADEIFTILMGEKVEPRRQFIFEHA 629

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 630 AEVRNLDI 637


>gi|72388587|gb|AAZ67937.1| DNA gyrase subunit B [Psychrobacter immobilis]
          Length = 747

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 325/741 (43%), Positives = 451/741 (60%), Gaps = 49/741 (6%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G     SGLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H EEG
Sbjct: 1   GPLSXMSGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEG 60

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           +SAA+VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y  ++ +
Sbjct: 61  VSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTD 120

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G+ D  +       + TGT++ F PSSD+F+   F YD L  RLRELSFLNS V+I L D
Sbjct: 121 GVPDADIQQ-MEPTDKTGTQIRFYPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTD 179

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R  +  E    +KGG+  FVSY++  K  + +    +    D IS+++A++W D Y+E 
Sbjct: 180 ERIDKRHE--FEHKGGLSEFVSYINAGKDGINEVFHFVSEQDDGISVEVALQWTDTYNEK 237

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V CFTNNIPQ+DGGTHLSG RSALTR + +Y+++    KK+K    GDD REG T+++S+
Sbjct: 238 VFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSV 297

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VES ++D  + +L+E+P   K I  K++DA+  RDAA
Sbjct: 298 KVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKAIAGKIIDAARARDAA 357

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILP
Sbjct: 358 RKAREMTRRKTTLDIAGLPGKLADCQEKDPAFSELYIVEGDSAGGSAKQGRSRKTQAILP 417

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+H
Sbjct: 418 LKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSH 477

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTLLLTFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ ++    
Sbjct: 478 IRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTK 537

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--I 630
                    I+   L   ++D  +   +            ++    +   + +   +   
Sbjct: 538 LHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVLLDALTHTPKLSTDMTYDFPA 597

Query: 631 NVSLASKLANRLNF----IAEKSE--------------------------KSWHGSINNS 660
             +    +  +L      ++ + E                          ++  G+ ++S
Sbjct: 598 MQAWKEAMQAQLEHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMKPVVETVEGAASDS 657

Query: 661 D---------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           +           +      +   ++L+ S I S         S            +    
Sbjct: 658 EALSAKAQWLPRITVYVHQLAHHYLLDASFINSGEYSKLLRLSAEWNTLLAEDAFIRREA 717

Query: 712 -----DKIKITGPCSLLDTIF 727
                  I +     L   + 
Sbjct: 718 TTGTTKDIPVRDFDYLWQQMM 738


>gi|294495525|ref|YP_003542018.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219]
 gi|292666524|gb|ADE36373.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219]
          Length = 634

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 298/589 (50%), Positives = 405/589 (68%), Gaps = 7/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD      YDA  IQ+L+GL+AV+KRPSMYIG  D   GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MSDR---DVYDATHIQVLEGLEAVRKRPSMYIGSID-GRGLHHLVYEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V++N DGS TV D+GRGIPTD+H +   SA EV+MT LHAGGKF++ SYKVSGGL
Sbjct: 57  CTSIDVSINRDGSVTVRDDGRGIPTDIHSKYKKSALEVVMTILHAGGKFDKSSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W  + + R G I+   ++ G   + ++  G     TGT +TF P +D
Sbjct: 117 HGVGVSVVNALSEWNDVEVHRNGKIFYQRYVRGKPLDDVIEKGDTE-STGTSMTFKPDTD 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   DFN++TL  RLREL+FLN  ++I + DKRS EP +    Y GGI +FV YL++ +
Sbjct: 176 IFETVDFNFETLVTRLRELAFLNRGIKIVITDKRSDEPLQEVFEYDGGIVSFVEYLNKSR 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L + PI  +  +++  +++AM++ D Y E V  F NNI   +GGTHL+G +SALTR  
Sbjct: 236 NVLHEQPIYFEREKEDTRVEIAMQYTDSYGEYVYSFANNINTHEGGTHLAGFKSALTRVA 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y + +    K    + GDD REG   ++S+K+ DP+F  QTK KL +SE++ +V+S V
Sbjct: 296 NDYAKSNN-LAKGDIKLSGDDIREGLAGIISVKLMDPQFEGQTKTKLGNSELKGIVDSMV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++GLS ++EE+P  A  I++K +DA   R+AA++AR+LTRRK  L++++LPGKLADCSE+
Sbjct: 355 SEGLSEFMEENPKIASAILQKAMDARRAREAAKKARELTRRKSALEVSTLPGKLADCSEK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAK GR R  QAILP RGKILNVE++R  ++L + EI +LITA
Sbjct: 415 DPSVSEIYLVEGDSAGGSAKMGRDRRFQAILPFRGKILNVEKSRLARILKNNEILSLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG D +D+ K RYHK++IMTDADVDGAHIRTL+LTFFFR M  LI  G++YI +PP
Sbjct: 475 MGTGIG-DEYDLTKARYHKVVIMTDADVDGAHIRTLMLTFFFRYMTPLIDAGYVYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I +GK+ ++   E   +  +                G ++ + L  
Sbjct: 534 LYSIKKGKNQRFAYTEREKDRIIEEIGEKGVSIQRYKGLGEMNPDQLWE 582



 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
             L  I  G   +        D I    G KG+S+QRYKGLGEMN  QLWETT+NP TR+
Sbjct: 532 PPLYSIKKGKNQRFAYTEREKDRIIEEIGEKGVSIQRYKGLGEMNPDQLWETTMNPQTRT 591

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +L+V + DA  AD++FS LMGDEV PRR+FIQE++     LD+
Sbjct: 592 ILQVTMEDAVAADEMFSVLMGDEVAPRRKFIQEHAKDVINLDV 634


>gi|3695371|gb|AAC62775.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 685

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 305/715 (42%), Positives = 434/715 (60%), Gaps = 39/715 (5%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHHMIYEV+DN+IDE++ G+ D I V +  +GSC VSDNGRGIP D+H  E +    V+
Sbjct: 5   GLHHMIYEVVDNSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVV 64

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +  
Sbjct: 65  LTVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEF 124

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +  
Sbjct: 125 GVIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK-- 181

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             +  +KGGI  FV  +D +KK  +   I      +++++++A+ +ND Y EN+L F NN
Sbjct: 182 HESFHFKGGISQFV--IDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNN 239

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F
Sbjct: 240 IKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQF 299

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LT
Sbjct: 300 EGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELT 359

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           R+K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILN
Sbjct: 360 RKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILN 419

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+HI+TLLLT
Sbjct: 420 VEKARLDKILKSEQIPNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLT 478

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FFFR M  L+ NG +Y+ +PPLY   + K   Y+KDE++L +YLI   +           
Sbjct: 479 FFFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNY------ 532

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHD-----KTFIEQAVISGVFNCESDQEINVSL 634
             I  NDL++++        ++KD     +     +  IE + +    N E    I   L
Sbjct: 533 EGIGMNDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFL 592

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
            ++  N LN    ++E               +   G++E  V+          +      
Sbjct: 593 ETQGHNILNHYINENEIR----------AFVQTQNGLEE-LVINEELFTHPLYEEASYIF 641

Query: 695 NRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749
           ++I++  L                   +L+ + +  +KG ++QRYKGLGEMN  Q
Sbjct: 642 DKIKDIGLEFD-----------KDILEVLEDVETNAKKGATIQRYKGLGEMNPEQ 685


>gi|307265429|ref|ZP_07546985.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919543|gb|EFN49761.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 633

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 308/584 (52%), Positives = 409/584 (70%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++ +Y A  IQIL+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I 
Sbjct: 3   KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D+GRGIPTD+H + G  A EV +T LHAGGKFN  +YKVSGGLHGVGV
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L++ +K+ G IY   +  G+    L V G       T +TF P  +IF   
Sbjct: 122 SVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YD L  RLREL+FLN  + I LID+R  +       Y+GGI +FV YL+R+K+ L +
Sbjct: 181 VFDYDVLAQRLRELAFLNKGINIKLIDERHGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++    +  +++ M++ND Y EN+  F NNI  ++GGTHL G ++ALT+ I  Y  
Sbjct: 239 EPIYMEAKNSDYEVEVCMQYNDSYTENIFSFANNIDTREGGTHLVGFKAALTKVINDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K +++++ G+D REG T+++S+K+ +P+F  QTK KL +SE+RS+VE+ V + LS
Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           A+LEE+P  AK+IV+K   A+  R+AAR+AR+LTRRK  L+  +LPGKLADCSE+DP K 
Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAK GR+   QAILPLRGKILNVE+AR DK+LS++EI  +ITALGTG+
Sbjct: 419 ELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGV 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI+KLRYHKI+IMTDADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY IT
Sbjct: 479 GND-FDISKLRYHKIVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +GK + Y   +  L+  L                G ++ + L +
Sbjct: 538 KGKKVYYAYSDRELDKILNEIGRENYTVQRYKGLGEMNADQLWD 581



 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +       +  S      +V      V    +    
Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGVGNDFDISKLRYHKIVIMTDADVDGSHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  +              L   +  IGR+  ++QRYK
Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKITKGKKVYYAYSDRELDKILNEIGRENYTVQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLW+TT++P+ R++L+V + DA  AD++F+ LMGD+VEPRREFI++ +    
Sbjct: 570 GLGEMNADQLWDTTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|326390355|ref|ZP_08211914.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993632|gb|EGD52065.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus JW
           200]
          Length = 633

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 307/584 (52%), Positives = 410/584 (70%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++ +Y A  IQIL+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I 
Sbjct: 3   KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D+GRGIPTD+H + G  A EV +T LHAGGKFN  +YKVSGGLHGVGV
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L++ +K+ G IY   +  G+    L V G       T +TF P  +IF   
Sbjct: 122 SVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YD L  RLREL+FLN  + I LID+R  +       Y+GGI +FV YL+R+K+ L +
Sbjct: 181 VFDYDVLAQRLRELAFLNKGINIKLIDERHGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++    +  +++ M++ND Y+EN+  F NNI  ++GGTHL G ++ALT+ I  Y  
Sbjct: 239 EPIYMEAKNSDYEVEVCMQYNDSYNENIFSFANNIDTREGGTHLVGFKAALTKVINDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K +++++ G+D REG T+++S+K+ +P+F  QTK KL +SE+RS+VE+ V + LS
Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           A+LEE+P  AK+IV+K   A+  R+AAR+AR+LTRRK  L+  +LPGKLADCSE+DP K 
Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAK GR+   QAILPLRGKILNVE+AR DK+LS++EI  +ITALGTG+
Sbjct: 419 ELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGV 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI+KLRYHKI+IMTDADVDG+HIRTLLLTFF+R M  LI NG ++I +PPLY IT
Sbjct: 479 GND-FDISKLRYHKIVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVFIAQPPLYKIT 537

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +GK + Y   +  L+  L                G ++ + L +
Sbjct: 538 KGKKVYYAYSDRELDKILNEIGRENYTVQRYKGLGEMNADQLWD 581



 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +       +  S      +V      V    +    
Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGVGNDFDISKLRYHKIVIMTDADVDGSHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  +              L   +  IGR+  ++QRYK
Sbjct: 510 LTFFYRFMRPLIENGNVFIAQPPLYKITKGKKVYYAYSDRELDKILNEIGRENYTVQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLW+TT++P+ R++L+V + DA  AD++F+ LMGD+VEPRREFI++ +    
Sbjct: 570 GLGEMNADQLWDTTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|298372284|ref|ZP_06982274.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275188|gb|EFI16739.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058]
          Length = 653

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 284/604 (47%), Positives = 385/604 (63%), Gaps = 17/604 (2%)

Query: 1   MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD   N      Y A SIQ+L+GL+AV+KRP+MYIGD  GE GLHH++YEV+DN+IDE+
Sbjct: 1   MSDETTNKALNKEYGASSIQVLEGLEAVRKRPAMYIGDV-GEKGLHHLVYEVVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L GY   I+VT+N D S TV D+GRGIP D+H++E  SA EV+MT LHAGGKF++ SYKV
Sbjct: 60  LAGYCKNISVTINKDNSVTVKDDGRGIPVDIHEKEKKSALEVVMTVLHAGGKFDKGSYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVS VNALS +LK  + R G  Y   +  G+    +   G   ++TGT +TF 
Sbjct: 120 SGGLHGVGVSCVNALSDYLKAEVCRNGKRYVQEYSRGVPLGEVKEVG-TSSETGTTITFH 178

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAF 232
           P  DIF    + Y  L  R+REL+FLN+ +++++ D    +     +    + + G+  F
Sbjct: 179 PDKDIFIDIHYKYSILVKRMRELAFLNAGIRLTITDLRSEEEGGANKTEEFYSEQGLREF 238

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y+D  ++PL+   I I   +    +++AM +N  Y EN+  + NNI   +GGTH++G 
Sbjct: 239 VKYIDSTREPLINDVIYIDTDKYGTPVEVAMMYNTSYTENLHSYVNNINTIEGGTHVTGF 298

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR +  Y + +   +K K  +  DD REG T+V+S+K+ +P+F  QTK KL + EV
Sbjct: 299 RTALTRTLKKYADDNKLLEKTKVEISSDDFREGITAVISVKVAEPQFEGQTKTKLGNDEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +V+  V + L+ +LEEHP EAK IV+K++ A+  R+AAR+AR+L +RK  L    LPG
Sbjct: 359 KGMVDRAVGEALNVFLEEHPKEAKTIVEKIILAATARNAARKARELVQRKSPLSGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS RD    E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K   S+
Sbjct: 419 KLADCSSRDASLCEIFLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKAMRHKAFESE 478

Query: 473 EIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           E+  + TALG  IG +         KLRYHK++IMTDADVDG+HI TL+LTFFFR M  L
Sbjct: 479 EVRNIYTALGVTIGTEEDSQALNIEKLRYHKVVIMTDADVDGSHIATLILTFFFRYMKEL 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKN 585
           I  G +YI  PPLY   +GK  +Y   EE    ++      +E    +      G ++  
Sbjct: 539 IEQGHVYIATPPLYLCKKGKVQEYCWTEEQRLRFIQQYGDGKESGITQQRYKGLGEMNPE 598

Query: 586 DLRN 589
            L  
Sbjct: 599 QLWE 602



 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 11/203 (5%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+    F  E  + I  +L   +    +  A   EK  +        +
Sbjct: 457 LPLRGKILNVEKAMRHKAFESEEVRNIYTALGVTIGTEEDSQALNIEKLRYHK------V 510

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSL 722
           V      V    +      F F    + I    +       L L   G   +        
Sbjct: 511 VIMTDADVDGSHIATLILTFFFRYMKELIEQGHVY-IATPPLYLCKKGKVQEYCWTEEQR 569

Query: 723 LDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           L  I   G     GI+ QRYKGLGEMN  QLWETT+NP+ R+L ++ I +A++AD +FS 
Sbjct: 570 LRFIQQYGDGKESGITQQRYKGLGEMNPEQLWETTMNPENRTLRQITIENAAEADYVFSM 629

Query: 780 LMGDEVEPRREFIQENSLPSALD 802
           LMGD+V PRR+FI+EN+  + +D
Sbjct: 630 LMGDDVAPRRQFIEENATYANID 652


>gi|282163382|ref|YP_003355767.1| DNA gyrase subunit B [Methanocella paludicola SANAE]
 gi|282155696|dbj|BAI60784.1| DNA gyrase subunit B [Methanocella paludicola SANAE]
          Length = 635

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 309/589 (52%), Positives = 408/589 (69%), Gaps = 6/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ I   +YDA SIQ+L+GL+AV+KRPSMYIG TD   GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MSNEIPAQAYDASSIQVLEGLEAVRKRPSMYIGSTDY-RGLHHLVYEVVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+N DGS TVSD+GRGIP ++H++    A E++MT LHAGGKF+  +YKVSGGL
Sbjct: 60  CHNIEVTINKDGSVTVSDDGRGIPVEMHEKYKRPALEIVMTMLHAGGKFDNLTYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL++ ++R   ++   ++ G   + +         TGT   F P   
Sbjct: 120 HGVGVSVVNALSEWLRVEVRRNEKLWVQEYVRGKPKDEVHEI-GTAIGTGTTTIFKPDPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F Y+ L +RLREL+FLN  V+I+L+D RS      T  Y+GGI  FV YL+  K
Sbjct: 179 IFETTEFKYEILVNRLRELAFLNKGVKITLMDARSG--VSDTFHYEGGIVQFVQYLNEGK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +  I  +  +D   +++AM++NDGY E VL F NNI   +GGTHLSG RSALTR  
Sbjct: 237 TPVNEKVIYFEKQKDTTDVEIAMQYNDGYSEIVLAFANNIHTTEGGTHLSGFRSALTRSF 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K+    K      G+D REG T+++S+K+ +P+F  QTK KL +S+V+ +V S V
Sbjct: 297 NDYAKKN-SLLKGDMQFSGEDIREGLTAIISVKLTNPQFEGQTKTKLGNSDVQGIVNSLV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +GL  +LEE+P EA+ I+ K + A   R+AAR+AR+LTRRK VL+  +LPGKLADCSER
Sbjct: 356 GEGLDDFLEENPSEARKIIDKAVQAFQAREAARKARELTRRKSVLENTTLPGKLADCSER 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP K EL+LVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+AR D++L+S+EI  LITA
Sbjct: 416 DPSKCELYLVEGDSAGGSAKQGRNRLFQAILPLRGKILNVEKARLDRVLTSEEIRALITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GT +G+D F I+K RYHKII+MTDADVDGAHIRTLLLTFFFR M  LI  G++YI +PP
Sbjct: 476 MGTSVGED-FVIDKARYHKIILMTDADVDGAHIRTLLLTFFFRYMKPLIEAGYVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           L+   +GK  +Y  +EE+L   L     +          G ++   L +
Sbjct: 535 LFRAKKGKEERYAYNEEALAGILEEMGRNGVAVNRYKGLGEMNPEQLWS 583



 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V  + ++   +  +     + +         ++      V    +    
Sbjct: 452 ILNVEKARLDRVLTSEEIRALITAMGTSVGEDFVIDKARYHKIILMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I +  +      +       ++       +L   +  +GR G+++ RYK
Sbjct: 512 LTFFFRYMKPLIEAGYVYIAQPPLFRAKKGKEERYAYNEEALAGILEEMGRNGVAVNRYK 571

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLW TT++P TR++L+V + DA +AD  F+ LMGD+VEPRR+FI +N+    
Sbjct: 572 GLGEMNPEQLWSTTMDPQTRTVLQVTMEDAVEADRTFTLLMGDKVEPRRDFIVQNAKFVR 631

Query: 800 ALDI 803
            LD+
Sbjct: 632 NLDV 635


>gi|284047394|ref|YP_003397733.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731]
 gi|283951615|gb|ADB46418.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731]
          Length = 646

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 311/599 (51%), Positives = 405/599 (67%), Gaps = 15/599 (2%)

Query: 1   MSDNIQN--------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M+   Q           Y A+ IQ+L+GL+AV+KRPSMYIG      GLHH++YEV+DN+
Sbjct: 1   MAKKKQTIEEEIAVHGDYGAEQIQVLEGLEAVRKRPSMYIGSIS-GRGLHHLVYEVIDNS 59

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L GY D I V ++ D S TV+DNGRGIP ++HK  G  A EV+MT LHAGGKF   
Sbjct: 60  IDEALAGYCDHIRVIIHPDNSITVTDNGRGIPVEMHKV-GKPAIEVVMTVLHAGGKFGDG 118

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGT 171
            YKVSGGLHGVGVS VNALS  + + +K+ G IY + F  G    PL V G    N+TGT
Sbjct: 119 GYKVSGGLHGVGVSCVNALSKKMVVEVKKNGKIYGIEFSKGKTTRPLYVKGECPENETGT 178

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            VTF P   IF+   ++YDTL+HR+REL+FLN  V+I L D+RS +       Y+GGI +
Sbjct: 179 SVTFWPDDTIFTETVYSYDTLKHRIRELAFLNKGVKIQLTDERSGQD--EVFHYEGGIVS 236

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV ++++ K+PL   PI ++G R +  +++AM++ D Y EN+  F NNI  ++GGTHL+G
Sbjct: 237 FVEFVNKGKEPLHAKPIYVEGERQDTIVEVAMQYTDAYTENIYTFVNNINTEEGGTHLAG 296

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           L+ ALTR I  Y  K+   K ++ ++ GDD REG T V+S+K+ +P+F  QTK KL +SE
Sbjct: 297 LKQALTRCINDYARKNSLLKDNEDNLSGDDVREGLTCVMSLKVREPQFEGQTKTKLGNSE 356

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR +V++ V + L+ + EE+   AK IV+K + AS  R AAR+ARDLTRRK  L+++SLP
Sbjct: 357 VRGIVDNMVTEALTEYFEENAPVAKKIVEKAIMASRARSAARKARDLTRRKSALEVSSLP 416

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS ++  ++E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DKML+S
Sbjct: 417 GKLADCSSKNAAETEIYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKARLDKMLNS 476

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           QEI  +ITA G GIG D FDI K RY KIIIMTDADVDGAHIRTLLLTFF+R M  LI N
Sbjct: 477 QEIRAMITAFGCGIG-DEFDIAKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIQN 535

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRN 589
           G ++I +PPLY I  GK   Y   +E L+  L      +          G ++   L  
Sbjct: 536 GNVFIAQPPLYLIRTGKKHTYAYSDEELQRKLDEVGRQNNPYVQRYKGLGEMNPEQLWE 594



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 4/126 (3%)

Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKG-ISMQ 737
            + +F  +Y + +  N         L LI  G K         L   +  +GR+    +Q
Sbjct: 520 LLLTFFYRYMKPLIQNGNVFIAQPPLYLIRTGKKHTYAYSDEELQRKLDEVGRQNNPYVQ 579

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN  QLWETT++P  R++L+V++ DA+ AD +FS LMGD+VEPRR+FI+EN+ 
Sbjct: 580 RYKGLGEMNPEQLWETTMDPSKRTVLQVQLEDAATADSVFSVLMGDKVEPRRQFIEENAG 639

Query: 798 PS-ALD 802
               LD
Sbjct: 640 KVTNLD 645


>gi|81251055|gb|ABB69863.1| DNA gyrase subunit B [Nitrosospira sp. KAN8]
          Length = 555

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 332/546 (60%), Positives = 423/546 (77%), Gaps = 5/546 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             ++ Y +DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L GY D I
Sbjct: 13  KSSTDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYCDEI 72

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           +V ++ D S TV DNGRGIPT + +  E   SAAE++MT LHAGGKF+  SYKVSGGLHG
Sbjct: 73  SVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGGLHG 132

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS WL+L I+R+  ++++ F  G+   PL VTG      GTEV FL S +IF
Sbjct: 133 VGVSVVNALSEWLRLSIRRDEKVHQIEFRMGVPVTPLAVTGKTE-RRGTEVHFLASKEIF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +++YD    RLRELSFLN+ V+I L+D+R+ +    T  + GG+++FV Y++R K  
Sbjct: 192 GDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--ETFAFVGGVKSFVEYVNRTKSV 249

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L  +     G +D I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + +
Sbjct: 250 LHPNIFYAAGEKDRIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTLNN 309

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y+EKS  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE  V+ 
Sbjct: 310 YIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIVSL 369

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +L EHP++AKII  K+++A+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+DP
Sbjct: 370 KLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEKDP 429

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITALG
Sbjct: 430 ALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITALG 489

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PPLY
Sbjct: 490 TGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPPLY 549

Query: 543 GITRGK 548
            I  GK
Sbjct: 550 KIKHGK 555


>gi|81251047|gb|ABB69857.1| DNA gyrase subunit B [Nitrosospira sp. 9SS1]
          Length = 555

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 335/548 (61%), Positives = 425/548 (77%), Gaps = 5/548 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            +  ++ YD+DSI+ILKGLDAV+KRP MYIGDT   +GLHHM++EVLDNAIDE+L GY D
Sbjct: 11  KSKGSTDYDSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYCD 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            I+V ++ D S TV DNGRGIPT + +  E   SAAE++MT LHAGGKFN  SYKVSGGL
Sbjct: 71  EISVIIHPDNSITVQDNGRGIPTGIKQDDEFKRSAAEIVMTELHAGGKFNSDSYKVSGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL+L I+R+G I+++ F  G+   PL  TG      GTEV FL S +
Sbjct: 131 HGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVAPLAATGKTE-RRGTEVHFLASKE 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +++YD    RLRELSFLN+ V+I L+D+R+ +    T  + GG+++FV Y++R K
Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLLDQRNAKE--ETFAFVGGVKSFVEYVNRTK 247

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L        G +D+I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR +
Sbjct: 248 SVLHPHIFYAAGEKDHIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+EKS  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE  V
Sbjct: 308 NNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIV 367

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L+ +L EHP++AKII  K+++A+  R+AAR+AR+LTRRKGVLD   LPGKLADC E+
Sbjct: 368 SLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA
Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITA 487

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G ++I +PP
Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547

Query: 541 LYGITRGK 548
           LY I  GK
Sbjct: 548 LYKIKHGK 555


>gi|188584649|ref|YP_001916194.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349336|gb|ACB83606.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 640

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 288/591 (48%), Positives = 407/591 (68%), Gaps = 5/591 (0%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M +N  +   +YD   IQ+L+GL+AV+KRP MYIG TD E GLHH+++EV+DN+IDE++ 
Sbjct: 1   MEENKFVNEQNYDESQIQVLEGLEAVRKRPGMYIGSTD-ERGLHHLVHEVVDNSIDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I + L       V+DNGRGIP   H +      EVIMT LHAGGKF+  SYKVSG
Sbjct: 60  GYCDDIRIKLEPGNKVRVTDNGRGIPVKDHPKIKKPTLEVIMTYLHAGGKFSNDSYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG+SVVN LS W+++++ R+G +Y+  +  G     +   G + +  GTE+ FLP 
Sbjct: 120 GLHGVGISVVNGLSKWIRVKVYRDGKVYQQEYEKGYPKTEIKEIGES-DKRGTEIIFLPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +IF   +F+Y  L++RL++L+FLN  V I++ D+R  E +E    Y+GGI++FV YL+ 
Sbjct: 179 EEIFETVEFDYQVLRNRLQQLAFLNRGVSITISDEREDEFKEEHFKYEGGIKSFVEYLNE 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  L   P+ I+G ++   +++A+++NDGY E +  + NNI   +GGTH SG + +LTR
Sbjct: 239 NKTTLFTPPVYIEGEQEGCKLEVAIQYNDGYQEMIHSYANNINTHEGGTHESGFKISLTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y  +    K   +++ G+D REG T+++S+K+ DP+F  QTK KL +SEVR +VE 
Sbjct: 299 TVNDYARRHNLLKNGDKNLTGEDIREGITAIISVKVEDPQFEGQTKTKLGNSEVRRIVEG 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V++ L ++LEE+P   K IV K ++AS  R+AAR+A++LTRRK  L++ +LPGKLADC+
Sbjct: 359 IVSEHLESYLEENPAVGKKIVNKAINASRAREAARKAKELTRRKNALEVTALPGKLADCT 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  KSEL+LVEGDSAGGSAKQGR RE QAILPLRGKILNVE+ARFDK+L+++EI T+I
Sbjct: 419 TKDASKSELYLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARFDKILANEEIKTII 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+GTGIG++ FDI+K RY +IIIMTDADVDGAHIRTLLLTFF+R M  LI +G++YI +
Sbjct: 479 TAIGTGIGEE-FDISKARYQRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEHGYVYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY + +     Y  ++  L++ L                G ++   L  
Sbjct: 538 PPLYMVKKKGKHYYTFNDHELDNLLEEIGKEGISLQRYKGLGEMNPTQLWE 588



 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  I     + +  S      ++      V    +    
Sbjct: 457 ILNVEKARFDKILANEEIKTIITAIGTGIGEEFDISKARYQRIIIMTDADVDGAHIRTLL 516

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I    +      +  +   G          L + +  IG++GIS+QRYK
Sbjct: 517 LTFFYRYMRPLIEHGYVYIAQPPLYMVKKKGKHYYTFNDHELDNLLEEIGKEGISLQRYK 576

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN +QLWETT+NP++R++L V + DA +AD +F+ LMG++V PRR+FI+EN+    
Sbjct: 577 GLGEMNPTQLWETTMNPESRTVLNVNLQDAIEADKIFTVLMGEKVSPRRKFIEENARDVR 636

Query: 800 ALDI 803
            LD+
Sbjct: 637 NLDV 640


>gi|320159847|ref|YP_004173071.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1]
 gi|319993700|dbj|BAJ62471.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1]
          Length = 639

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 292/593 (49%), Positives = 395/593 (66%), Gaps = 10/593 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  + N+SY A  IQ+L+GL+AV++RP MY+G TD    LHH++YEV+DN+IDE+L G 
Sbjct: 1   MATPV-NTSYGAKDIQVLEGLEAVRRRPGMYVGGTD-LKALHHLVYEVVDNSIDEALAGA 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S TV DNGRGIP D+H E+  SA EV+MT LHAGGKF   SYKVSGGL
Sbjct: 59  CDHIQVTIHPDSSVTVEDNGRGIPVDIHPEKQKSALEVVMTVLHAGGKFGSGSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSS 179
           HGVGVS VNALS W ++ ++R+G ++   +  G+   P+ V G    + TGT+ TF    
Sbjct: 119 HGVGVSAVNALSEWCEVEVRRDGKVHFQRYERGVPVEPVKVIGKCKPNETGTKTTFRFDP 178

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF    D+ +DTL  R RE++F+   V I LID+R+          +GGI +FV YL+R
Sbjct: 179 TIFKGDLDYKFDTLVQRFREMAFVTRKVTIRLIDERASREMSFYF--EGGITSFVRYLNR 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +++ L    +  +   + + I+ A+++ D Y E+V  F N I   DGGTHL+GLR+A+TR
Sbjct: 237 NREVLHP-VVYAEKEVEGVGIEAAIQYTDAYAESVYSFANTINTIDGGTHLTGLRAAITR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  ++   K    +  GDD REG T+++S+K PDP+F SQTK KL++ EV++ V+ 
Sbjct: 296 VINDYARRNNFLKDGDPNFSGDDTREGLTAIVSVKHPDPQFESQTKVKLMNPEVQTYVQQ 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V +  S +LEE+P  AK I++K L ++  RDAAR+ARDL  RK  L+  +LPGKLADCS
Sbjct: 356 VVGEAFSTFLEENPQAAKAIIQKCLTSARARDAARKARDLVIRKSTLESLTLPGKLADCS 415

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ERDP K+EL++VEGDSAGGSAKQGR R  QA+LPLRGKILN ERAR DK+LS+ E+  LI
Sbjct: 416 ERDPSKTELYIVEGDSAGGSAKQGRDRHFQAVLPLRGKILNTERARLDKILSNNEVKALI 475

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           +ALGTGIG DSFD++ LRY ++IIMTDADVDG+HIRTLLLTFFFR M  LI +G L+I +
Sbjct: 476 SALGTGIG-DSFDLSGLRYGRVIIMTDADVDGSHIRTLLLTFFFRYMLPLIEDGHLFIAQ 534

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRN 589
           PPLY I     ++Y   +   +  L    +   +         G ++   L  
Sbjct: 535 PPLYRIAYKNQVRYAYTDADRDRILKELGITPEKASIQRYKGLGEMNPTQLWE 587



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QRYKGLGEMN +QLWETT+NP+ R+LL V + DA+ AD  F  LMG  V PR +FIQ 
Sbjct: 570 SIQRYKGLGEMNPTQLWETTMNPENRTLLMVTVEDAAAADRTFDMLMGAAVPPRTKFIQT 629

Query: 795 NSLPS-ALDI 803
           ++     LDI
Sbjct: 630 HARDVRNLDI 639


>gi|312878944|ref|ZP_07738744.1| DNA gyrase subunit B [Aminomonas paucivorans DSM 12260]
 gi|310782235|gb|EFQ22633.1| DNA gyrase subunit B [Aminomonas paucivorans DSM 12260]
          Length = 635

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 292/599 (48%), Positives = 398/599 (66%), Gaps = 3/599 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
               S Y A  IQ+L+GL+AV+KRP MYIGD  G  GLHH++YEV+DNAIDE++ G  D 
Sbjct: 2   EAPASQYTAKDIQVLEGLEAVRKRPGMYIGD-QGPRGLHHLVYEVVDNAIDEAMAGVCDT 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + VT++ +GS +V DNGRGIPT++H   G SAAEV++T LHAG KF++K+Y+VSGGLHGV
Sbjct: 61  VYVTIHPEGSVSVVDNGRGIPTEIHAATGKSAAEVVLTVLHAGAKFDKKAYQVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS WL++ I R G  +   F  G     L  TG   +  GT+V F+P  +IFS
Sbjct: 121 GVSVVNALSEWLEVTIWRNGREHRQRFERGAAVTELQ-TGEDTDRRGTKVQFMPDEEIFS 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             DF+ +TL  RLREL+FLN  + I   D R     E    ++GGI +F  YL+R K+ L
Sbjct: 180 TLDFSSETLLGRLRELAFLNPGITIHFQDLRQDPILEKHYHFEGGIASFAEYLNRGKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + P+ ++G +DN+ +D+A+++ND Y E V  F N I   +GGTH+SG R+ALTR +   
Sbjct: 240 FKPPVVVRGEKDNVVVDVALQYNDTYLERVFAFANLINTVEGGTHVSGFRTALTRAVNDQ 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K    K    +  GDD +EG T+V+S+K+ +P+F  QTK KL + +V+ +V+S V +G
Sbjct: 300 ARKEKILKDKDPNFTGDDLKEGLTAVVSVKLLEPQFEGQTKTKLGNGDVKGIVDSVVYEG 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L A LEE     K +V K + A   R+AA++ARDL RRK  +    LPGKLADCS R+P+
Sbjct: 360 LKALLEERADILKPVVDKAVRARQAREAAKKARDLVRRKSAMSGLDLPGKLADCSNRNPE 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+++VEG+SAGGSAK GR+R  QAILPLRGKILNVERAR DK+LS++ + T+I ALG 
Sbjct: 420 ECEVYIVEGESAGGSAKMGRNRSFQAILPLRGKILNVERARLDKILSNEMVRTIIQALGC 479

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+G D FD  KLRYHKI +M DADVDGAHIRTLLLT FFR MP +I NG LY+ +PPLY 
Sbjct: 480 GVG-DDFDYAKLRYHKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLYVAQPPLYR 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           +  GK++ Y   ++ L+      S    ++ +     +  +      +D A +I K ++
Sbjct: 539 VQEGKTVHYCFSDKELKTLTDKASKRVSVQRYKGLGEMNPEQLWETTMDPANRIIKRVE 597



 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 17/203 (8%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + + E  + I  +L   + +  ++   +  K +  +  + D  
Sbjct: 447 LPLRGKILNVERARLDKILSNEMVRTIIQALGCGVGDDFDYAKLRYHKIFLMADADVDGA 506

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIK-ITGPCS 721
             R               + +   +Y  +I  N         L  +  G  +        
Sbjct: 507 HIRT-------------LLLTLFFRYMPQIIENGHLYVAQPPLYRVQEGKTVHYCFSDKE 553

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
            L T+     K +S+QRYKGLGEMN  QLWETT++P  R + RV++ DA  AD+LF  LM
Sbjct: 554 -LKTLTDKASKRVSVQRYKGLGEMNPEQLWETTMDPANRIIKRVEVDDAVTADELFGILM 612

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           GD VEPRREFI+ ++     LDI
Sbjct: 613 GDAVEPRREFIETHAKEVRNLDI 635


>gi|167036441|ref|YP_001664019.1| DNA gyrase subunit B [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751447|ref|ZP_05492325.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320114866|ref|YP_004185025.1| DNA topoisomerase IV subunit B [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855275|gb|ABY93683.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749666|gb|EEU62692.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319927957|gb|ADV78642.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 633

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 307/584 (52%), Positives = 408/584 (69%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++ +Y A  IQIL+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I 
Sbjct: 3   KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D+GRGIPTD+H +    A EV +T LHAGGKFN  +YKVSGGLHGVGV
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKVRKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L++ +K+ G IY   +  G+    L V G       T +TF P  +IF   
Sbjct: 122 SVVNALSEKLEVIVKQHGKIYRQRYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YD L  RLREL+FLN  + I LID+R  +       Y+GGI +FV YL+R+K+ L +
Sbjct: 181 VFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++    +  +++ M++ND Y EN+  F NNI  ++GGTHL G ++ALT+ I  Y  
Sbjct: 239 EPIYMEAKNSDYEVEVCMQYNDSYTENIFSFANNIDTREGGTHLVGFKAALTKVINDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K +++++ G+D REG T+++S+K+ +P+F  QTK KL +SE+RS+VE+ V + LS
Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           A+LEE+P  AK+IV+K   A+  R+AAR+AR+LTRRK  L+  +LPGKLADCSE+DP K 
Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAK GR+   QAILPLRGKILNVE+AR DK+LS++EI  +ITALGTGI
Sbjct: 419 ELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY IT
Sbjct: 479 G-DEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +GK + Y   +  L+  L                G ++ + L +
Sbjct: 538 KGKKVYYAYSDRELDRILNEIGRENYTVQRYKGLGEMNADQLWD 581



 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +       +  S      +V      V    +    
Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  +              L   +  IGR+  ++QRYK
Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKITKGKKVYYAYSDRELDRILNEIGRENYTVQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLW+TT++P+ R++L+V + DA  AD++F+ LMGD+VEPRREFI++++    
Sbjct: 570 GLGEMNADQLWDTTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKHAKTVR 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|72388573|gb|AAZ67930.1| DNA gyrase subunit B [Psychrobacter okhotskensis]
          Length = 741

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 327/734 (44%), Positives = 453/734 (61%), Gaps = 49/734 (6%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H EEG+SAA+VI
Sbjct: 5   GLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVDIHPEEGVSAAQVI 64

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y  ++ +G+ D  +
Sbjct: 65  MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADI 124

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
                A + TGT++ F PS+D+F+   F YD L  RLRELSFLNS V+I L D+R  +  
Sbjct: 125 QQ-MEATDKTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRH 183

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
           E    +KGG+  FVSY++  K  + +         D IS+++A++W D Y+E VLCFTNN
Sbjct: 184 E--FEHKGGLSEFVSYINAGKDGVNEVFHFDSEQDDGISVEVALQWTDTYNEKVLCFTNN 241

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHLSG RSALTR + SY+++    KK+K +  GDD REG T+++S+K+PDP+F
Sbjct: 242 IPQRDGGTHLSGFRSALTRCLNSYMDRENLFKKEKVTATGDDAREGLTAIVSVKVPDPKF 301

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEV+S VES ++D  + +L E+P  +K I  K++DA+  RDAAR+AR++T
Sbjct: 302 SSQTKDKLVSSEVKSAVESAMHDKFNDFLLENPTASKAIANKIIDAARARDAARKAREMT 361

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILN
Sbjct: 362 RRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILN 421

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLLT
Sbjct: 422 VERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLT 481

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ ++           
Sbjct: 482 FFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTKLHISADA 541

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASK 637
             I+   L   ++D  +   +            ++    +   + +   D+    +    
Sbjct: 542 PAITGQALETLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSTDMTYDKSAMQAWQEA 601

Query: 638 LANRLNF----IAEKSE--------------------------KSWHGSINNSD------ 661
           +  +L      ++ + E                          +   G++++S+      
Sbjct: 602 MQTQLEHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMRPAVEIADGTVSDSEALSAKA 661

Query: 662 ---ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-----DK 713
                +      +   ++L+ S I S         S            +          K
Sbjct: 662 QWLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLEEEAFIRREATAGTTKK 721

Query: 714 IKITGPCSLLDTIF 727
           I +     L   + 
Sbjct: 722 IPVRDFDYLWQQMM 735


>gi|73670270|ref|YP_306285.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro]
 gi|72397432|gb|AAZ71705.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro]
          Length = 633

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 295/589 (50%), Positives = 400/589 (67%), Gaps = 8/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD      YDA  IQ+L+GL+AV+KRPSMYIG TD   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSDK---QVYDASHIQVLEGLEAVRKRPSMYIGSTDS-RGLHHLVYEVVDNSIDEALAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             II VT+N DGS TV DNGRGIP D H     SA EV+MT LHAGGKF++ +YKVSGGL
Sbjct: 57  CTIINVTINPDGSVTVLDNGRGIPVDPHPFHKKSALEVVMTVLHAGGKFDKNTYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVN LS WL++ + REG  Y   +  G     ++  G++     T+ TF P   
Sbjct: 117 HGVGVSVVNGLSEWLEVEVAREGKKYFQRYDRGKPKADVLEIGTSETTG-TKTTFKPDEK 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   DF+Y+ L +RLREL+FLN  + ISL+D R+P+ +  T  Y+GGI  FV YL+  K
Sbjct: 176 IFETLDFDYEILSNRLRELAFLNRGLTISLMDLRTPDGQAETFTYEGGIVEFVKYLNNKK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL   PI  +  RD++ +++AM++   Y ENV  F NNI   +GGTH+ G ++ALTR  
Sbjct: 236 QPLHA-PIYFERQRDDMVVEIAMQYTSSYAENVYSFANNINTHEGGTHIIGFKTALTRVA 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y++ +    K+   + GDD REG T+++S+K+ +P+F  QTK +L +S+V+ +V+S V
Sbjct: 295 NDYIKANK-LSKEDIKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSDVKGIVDSLV 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            DGL+ + EE+P  A +I++K L A   R+AA++AR+LTRRK  L++++LPGKLADCSE+
Sbjct: 354 TDGLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKNALEVSTLPGKLADCSEK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P   E+++VEG+SAGGSAKQGR R  QAILPLRGKILNVE++R  K+L ++EI +LITA
Sbjct: 414 NPAACEIYIVEGNSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNEEIISLITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGI  + F +   RYHK+IIMTDADVDG HIRTLLLT FFR M  LI  G++YI +PP
Sbjct: 474 IGTGI-SEDFTLESARYHKVIIMTDADVDGEHIRTLLLTLFFRYMRPLIDEGYVYIAQPP 532

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I +GK+  Y+  +  LE                   G ++   L  
Sbjct: 533 LYRIKKGKAEYYIHSDRELEAKKKELGEKGLGIQRYKGLGEMNPGQLWE 581



 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++ + +  I     + +         ++      V  + +    
Sbjct: 450 ILNVEKSRLAKILKNEEIISLITAIGTGISEDFTLESARYHKVIIMTDADVDGEHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               F      I    +      +  +     +  I     L      +G KG+ +QRYK
Sbjct: 510 LTLFFRYMRPLIDEGYVYIAQPPLYRIKKGKAEYYIHSDRELEAKKKELGEKGLGIQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-S 799
           GLGEMN  QLWETT+NP++R LL+V + DA +AD++F  LMGDEVEPRR FI+ ++    
Sbjct: 570 GLGEMNPGQLWETTMNPESRILLQVTLEDAIRADEIFRVLMGDEVEPRRNFIEAHAKEVV 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|21675071|ref|NP_663136.1| DNA gyrase subunit B [Chlorobium tepidum TLS]
 gi|21648310|gb|AAM73478.1| DNA gyrase subunit B [Chlorobium tepidum TLS]
          Length = 647

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 284/593 (47%), Positives = 406/593 (68%), Gaps = 10/593 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +    ++ Y A +IQ+L G++ V+KRP+MYIGD     GLHH++YE++DNAIDE+L GY 
Sbjct: 8   TAQNASTEYGATNIQVLDGIEHVRKRPAMYIGDIHS-RGLHHLVYEIVDNAIDETLAGYN 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V +N DGS TV+D+GRGIP D+H  +  SA E++MT + AGGKF++ +YKVSGGLH
Sbjct: 67  DYIHVAMNPDGSVTVTDHGRGIPVDIHPVKKKSALELVMTVIGAGGKFDKGAYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS W ++ + R+G I+  ++  G+    +   G   +  GT+VTF P  +I
Sbjct: 127 GVGASVVNALSEWCEVEVYRDGKIFRQTYRRGVPQGGVEEIG-TTDQRGTKVTFKPDPEI 185

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F + +F  D +  R+REL+FLNS+++I +   +  E  E    Y+GG++ FV ++D ++ 
Sbjct: 186 FKITEFRKDIILDRMRELAFLNSNLRIIV---QDAEGNEEIFHYEGGLKEFVRFIDSNRL 242

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L++ PI + G RD+  +++A+++ND Y EN+  + NNI   +GGTH++G R ALTR + 
Sbjct: 243 SLLKEPIFLSGERDSTMVEIALQYNDSYQENIFSYVNNINTHEGGTHVTGFRKALTRTLN 302

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y +K+   K  K ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE +S+VE+ VN
Sbjct: 303 AYAQKNDLLKNVKITLTGDDFKEGLTAVISVKVPEPQFEGQTKTKLGNSETQSIVETIVN 362

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ + E +P   K+I++KV  A++ R+AAR+A++LTRRK VL+ + LPGKLADCS  D
Sbjct: 363 EQLAEFAESNPGTLKLIIEKVKSAAISREAARKAKELTRRKSVLESSGLPGKLADCSIND 422

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P   EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  KML ++EI T+I AL
Sbjct: 423 PDHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILAL 482

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG++ F   KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI  G ++I +PPL
Sbjct: 483 GTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIAQPPL 542

Query: 542 YGITRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589
           Y +  G+  QY  DE+           + +  +          G ++   L +
Sbjct: 543 YLVKSGREQQYAWDEDERLSIVEQMKKLQKGKANVSIQRYKGLGEMNPEQLWS 595



 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 10/171 (5%)

Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
            L       E+ +         ++      V    +      F F      I + ++   
Sbjct: 479 ILALGTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVF-I 537

Query: 701 YLTILSLICNGDKIKIT-------GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
               L L+ +G + +              +  +   G+  +S+QRYKGLGEMN  QLW T
Sbjct: 538 AQPPLYLVKSGREQQYAWDEDERLSIVEQMKKLQK-GKANVSIQRYKGLGEMNPEQLWST 596

Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           T++P  RSLL+V + +A +AD +FS LMGD+VEPRR+FI++N+     LD+
Sbjct: 597 TMDPAHRSLLQVTVENAMEADQVFSTLMGDKVEPRRDFIEKNARYVRRLDV 647


>gi|297616219|ref|YP_003701378.1| DNA gyrase subunit beta [Syntrophothermus lipocalidus DSM 12680]
 gi|297144056|gb|ADI00813.1| DNA gyrase, B subunit [Syntrophothermus lipocalidus DSM 12680]
          Length = 636

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 299/636 (47%), Positives = 421/636 (66%), Gaps = 10/636 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y A  IQ+L+GL+AV+KRP MYIG TD   GLHH+++E++DN+IDE++ GY
Sbjct: 1   MNINGSKNEYTALDIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVFEIVDNSIDEAVAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +  D + TV+DNGRGIP D+H + GI A EVI+T LH+G KF    Y +SGGL
Sbjct: 60  CDEIKVIILDDSTVTVTDNGRGIPVDMHPKMGIPALEVILTTLHSGAKFGGSGYTISGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS WL++ + R+G +Y   +  G    PL VTG A   TGT++TF P  +
Sbjct: 120 HGVGLSVVNALSRWLEVEVARDGQLYHQRYERGKPVTPLAVTG-ACQTTGTKITFSPDPE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+ + +  RLRELS+LN   +I L DKR+   R++  ++ GGI  FV YL +++
Sbjct: 179 IFEEICFSAEIIGQRLRELSYLNQGTRIVLCDKRTG--RDVEYYHTGGIRDFVKYLSKNR 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL   PI  +  ++   +++A+++N GY E +L + NNI  ++GGTH  G ++ LTR +
Sbjct: 237 EPLSPEPIYFRIGKEGTVVEVAIQYNTGYTETLLSYANNIHTQEGGTHELGFKNGLTRVV 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K    K+++ +++G+D REG T+V+S+ + DP+F  QTK KL ++ +RS+VE  V
Sbjct: 297 NEYAKKQGMLKENEGNLLGEDIREGMTAVISVLVQDPQFEGQTKTKLGNAFIRSLVEGAV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +D + A+ +E+P  AK IV+K + A   R+AAR+AR+LTRRK +LD  SLPGKLADCSE+
Sbjct: 357 SDFVGAFFDENPSLAKKIVEKAIAARRAREAARKARELTRRKNLLDSTSLPGKLADCSEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS++EI  LITA
Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKARLDKVLSNEEIRALITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG+D FDINK RYH++IIMTDADVDG+HIR LLLTFF+R M  LI  G++Y+ +PP
Sbjct: 477 IGTGIGED-FDINKARYHRLIIMTDADVDGSHIRVLLLTFFYRYMRPLIEAGYVYVAQPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + RGK + Y+ ++  L+ +L  Q   +         G ++   L         ++  
Sbjct: 536 LYELKRGKEVHYIYNDRELQRFLEQQGNKKYGVKRYKGLGEMNPEQLWET-----TMNPE 590

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +       +  I   VI      E  +     +  
Sbjct: 591 NRTLLQVRIEDAIAADVIFSSLMGEKVEPRREFIQE 626



 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    ++   +  I     + +  +      L+      V    +    
Sbjct: 453 ILNVEKARLDKVLSNEEIRALITAIGTGIGEDFDINKARYHRLIIMTDADVDGSHIRVLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  L    +   I     L   +   G K   ++RYK
Sbjct: 513 LTFFYRYMRPLIEAGYVYVAQPPLYELKRGKEVHYIYNDRELQRFLEQQGNKKYGVKRYK 572

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-LPS 799
           GLGEMN  QLWETT+NP+ R+LL+V+I DA  AD +FS LMG++VEPRREFIQEN+ L +
Sbjct: 573 GLGEMNPEQLWETTMNPENRTLLQVRIEDAIAADVIFSSLMGEKVEPRREFIQENARLVT 632

Query: 800 ALDI 803
            LDI
Sbjct: 633 NLDI 636


>gi|239624129|ref|ZP_04667160.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520515|gb|EEQ60381.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 637

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 292/584 (50%), Positives = 402/584 (68%), Gaps = 5/584 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I VT
Sbjct: 3   EQYGADQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGYCDSIEVT 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N D S TV D+GRGIP  + K+ G+ A EV+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 62  INEDNSITVVDDGRGIPVGIQKKAGLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS WL++++ ++G+IY+  +  G +  PL + G    +  GT+VTFLP  +IF    
Sbjct: 122 VNALSEWLEVQVYKDGDIYQQRYERGKVTYPLKIVGKCSPDQHGTKVTFLPDKEIFEETI 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YDTL+ RLRE +FL  +++I+L D R  +  E T  Y+GGI+ FV+YL++ K PL   
Sbjct: 182 YDYDTLKIRLRETAFLTKNLRITLKDDRDEKK-EKTFHYEGGIKEFVTYLNKGKTPLYDQ 240

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +GS++ + ++++M+ ND Y EN+  F NNI   +GGTHL+G ++ALT+    Y  K
Sbjct: 241 VIYCEGSKEGVYVEVSMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARK 300

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K ++ S+ G+D REG T+++SIK+ +P+F  QTK+KL +SE RS V++ V++ L+ 
Sbjct: 301 NKLLKDNEDSLSGEDIREGLTAIISIKVEEPQFEGQTKQKLGNSEARSAVDNIVSEQLTY 360

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LE++P  AK + +K + A   R AAR+ARDLTRRK  LD  +LPGKLADCS+++P+  E
Sbjct: 361 FLEQNPAIAKAMCEKSIMAQRARAAARKARDLTRRKSALDGMALPGKLADCSDKNPENCE 420

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR D++  + EI  +ITA GTGI 
Sbjct: 421 IYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAMITAFGTGIH 480

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + +
Sbjct: 481 ED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKVEK 539

Query: 547 GKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
            K + Y   ++ L   L +               G +    L  
Sbjct: 540 SKKVWYAYSDDELNSILTDIGRDTNNKIQRYKGLGEMDAEQLWE 583



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y       L  
Sbjct: 477 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYK 536

Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        L   +  IGR   + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 537 VEKSKKVWYAYSDDELNSILTDIGRDTNNKIQRYKGLGEMDAEQLWETTMDPERRVLLRV 596

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + + +  + D  F+ LMGD+VEPRREFI+ N+     LDI
Sbjct: 597 TLDEETTSEIDLTFTTLMGDQVEPRREFIEANAKRVQNLDI 637


>gi|289577274|ref|YP_003475901.1| DNA gyrase subunit beta [Thermoanaerobacter italicus Ab9]
 gi|289526987|gb|ADD01339.1| DNA gyrase, B subunit [Thermoanaerobacter italicus Ab9]
          Length = 633

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 308/584 (52%), Positives = 411/584 (70%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++ +Y A  IQIL+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I 
Sbjct: 3   KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D+GRGIPTD+H + G  A EV +T LHAGGKFN  +YKVSGGLHGVGV
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L++ +K+ G I+  ++  G+    L + G       T +TF P  +IF   
Sbjct: 122 SVVNALSEKLEVVVKQRGKIFRQTYERGVPKTELEIIGETEETG-TTITFKPDKEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FNYD L  RLREL+FLN  + I LID+R  +       Y+GGI +FV YL+R+K+ L +
Sbjct: 181 VFNYDVLAQRLRELAFLNKGINIRLIDERDGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++    +  +++ M++ND Y EN+  F NNI  ++GGTHL G +SALT+ I  Y  
Sbjct: 239 EPIYMEAKNTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSALTKVINDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K +++++ G+D REG T+++S+K+ +P+F  QTK KL +SE+RS+VE+ V + LS
Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVIEKLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           A+LEE+P  AK+IV+K   A+  R+AAR+AR+LTRRK  L+  +LPGKLADCSE+DP K 
Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAK GR+   QAILPLRGKILNVE+AR DK+LS++EI  +ITALGTGI
Sbjct: 419 ELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY IT
Sbjct: 479 G-DEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +GK + Y   ++ L+  L                G ++ + L +
Sbjct: 538 KGKKVYYAYSDKELDRILNEIGRENYTVQRYKGLGEMNADQLWD 581



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +       +  S      +V      V    +    
Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  +              L   +  IGR+  ++QRYK
Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKITKGKKVYYAYSDKELDRILNEIGRENYTVQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLW+TT++P+ R++L+V + DA  AD++F+ LMGD+VEPRREFI+  +    
Sbjct: 570 GLGEMNADQLWDTTMDPEKRTILKVTLEDAIAADEIFTILMGDKVEPRREFIERYAKTVR 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|218961619|ref|YP_001741394.1| DNA gyrase subunit B [Candidatus Cloacamonas acidaminovorans]
 gi|167730276|emb|CAO81188.1| DNA gyrase subunit B [Candidatus Cloacamonas acidaminovorans]
          Length = 632

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 307/632 (48%), Positives = 418/632 (66%), Gaps = 10/632 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +Q+S+Y A +I++LKGL+AV+KRP+MYIG T  E GLHH++YEV+DN+IDE+L GY D I
Sbjct: 1   MQSSTYTASNIKVLKGLEAVRKRPAMYIGGTS-ERGLHHLVYEVIDNSIDEALAGYCDEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
             T+  +G+  V DNGRGIP D+ K+ G+ A +V++T LHAGGKF+ KSYKV+GGLHGVG
Sbjct: 60  ICTITTEGNIRVEDNGRGIPVDIQKDMGVPAVQVVLTVLHAGGKFDDKSYKVAGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS +L++ I ++G  Y M F  G+    L V G   N TGT VTF P   IF  
Sbjct: 120 VSVVNALSEFLEVNIFKDGKEYFMRFERGLPVTELQVLGDT-NKTGTVVTFRPDPLIFET 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F++D L  RLREL+FLNS ++I L D+RS   R     Y+GGI++FV YL+++KKPL 
Sbjct: 179 TEFSFDYLTSRLRELAFLNSGLRIILKDERSG--RVHDFKYEGGIKSFVEYLNQNKKPLF 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +PI I   ++ +  ++A+++N+GY EN+  F NNI   +GGTHLSG +S LTR + +Y+
Sbjct: 237 PNPIYISSVKEGMEFEVALQYNEGYQENIFSFANNINTTEGGTHLSGFKSGLTRAVNTYI 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           + +   K +K S  G+D REG T+V+S+K+ +P+F  QTK KL +SEV  +V S V + L
Sbjct: 297 KNADLLKNEKVSPSGEDIREGLTAVISLKIANPQFEGQTKTKLQNSEVEGIVNSAVYEKL 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + EEHP EAK I  K + A+  R+AAR+AR+LTRRK VL+  SLPGKLADC+  DP+K
Sbjct: 357 MEYFEEHPAEAKNITMKSILAARSREAARKARELTRRKTVLESGSLPGKLADCTLSDPEK 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQGR R  QAILPL GK+LN E+AR DK+L++ +I  +I ALG G
Sbjct: 417 TELFLVEGDSAGGSAKQGRDRSFQAILPLWGKMLNTEKARVDKVLNNDKIQPIILALGAG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG   FDI+KLRYHKIIIM DADVDG+HI TLL+TFF+R M  +I  G LYI  PPL+ +
Sbjct: 477 IG-QEFDISKLRYHKIIIMADADVDGSHIATLLMTFFYRYMRPVIEEGKLYIAMPPLFQV 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +GK   YV +EE  +  +        +       G ++   L         +D   +  
Sbjct: 536 RKGKQKVYVYNEEERDKAIREFGEKGVLVQRYKGLGEMNAEQLWET-----TLDPKNRKM 590

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                   IE   +  +   +  +     +  
Sbjct: 591 IAIKMDDAIEADRMFTILMGDEVEPRREFIQE 622



 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I   ++      +  +     K+ +         I   G
Sbjct: 499 VDGSHIATLLMTFFYRYMRPVIEEGKLYIAMPPLFQVRKGKQKVYVYNEEERDKAIREFG 558

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            KG+ +QRYKGLGEMNA QLWETTL+P  R ++ +K+ DA +AD +F+ LMGDEVEPRRE
Sbjct: 559 EKGVLVQRYKGLGEMNAEQLWETTLDPKNRKMIAIKMDDAIEADRMFTILMGDEVEPRRE 618

Query: 791 FIQENSLPS-ALDI 803
           FIQEN+     LD+
Sbjct: 619 FIQENARYVKNLDV 632


>gi|297543507|ref|YP_003675809.1| DNA gyrase subunit B [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296841282|gb|ADH59798.1| DNA gyrase, B subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 633

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 308/584 (52%), Positives = 411/584 (70%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++ +Y A  IQIL+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I 
Sbjct: 3   KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D+GRGIPTD+H + G  A EV +T LHAGGKFN  +YKVSGGLHGVGV
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L++ +K+ G I+  ++  G+    L + G       T +TF P  +IF   
Sbjct: 122 SVVNALSEKLEVVVKQRGKIFRQTYERGVPKTDLEIIGETEETG-TTITFKPDKEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FNYD L  RLREL+FLN  + I LID+R  +       Y+GGI +FV YL+R+K+ L +
Sbjct: 181 VFNYDVLAQRLRELAFLNKGINIKLIDERDGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++    +  +++ M++ND Y EN+  F NNI  ++GGTHL G +SALT+ I  Y  
Sbjct: 239 EPIYMEAKNTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSALTKVINDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K +++++ G+D REG T+++S+K+ +P+F  QTK KL +SE+RS+VE+ V + LS
Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVIEKLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           A+LEE+P  AK+IV+K   A+  R+AAR+AR+LTRRK  L+  +LPGKLADCSE+DP K 
Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAK GR+   QAILPLRGKILNVE+AR DK+LS++EI  +ITALGTGI
Sbjct: 419 ELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY IT
Sbjct: 479 G-DEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +GK + Y   ++ L+  L                G ++ + L +
Sbjct: 538 KGKKVYYAYSDKELDRILNEIGRENYTVQRYKGLGEMNADQLWD 581



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +       +  S      +V      V    +    
Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  +              L   +  IGR+  ++QRYK
Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKITKGKKVYYAYSDKELDRILNEIGRENYTVQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLW+TT++P+ R++L+V + DA  AD++F+ LMGD+VEPRREFI+  +    
Sbjct: 570 GLGEMNADQLWDTTMDPEKRTILKVTLEDAIAADEIFTILMGDKVEPRREFIERYAKTVR 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|194332868|ref|YP_002014728.1| DNA gyrase subunit B [Prosthecochloris aestuarii DSM 271]
 gi|194310686|gb|ACF45081.1| DNA gyrase, B subunit [Prosthecochloris aestuarii DSM 271]
          Length = 644

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 296/639 (46%), Positives = 419/639 (65%), Gaps = 8/639 (1%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      +SSY A +IQIL G++ V+KRP+MYIGD +   GLHH+IYE++DN+IDE+L
Sbjct: 1   MSETQTPSASSSYLATNIQILDGIEHVRKRPAMYIGDIN-VRGLHHLIYEIVDNSIDETL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I ++LN DGS TVSDNGRGIP D+H ++  SA E++MT + AGGKF++ +YKVS
Sbjct: 60  AGYNDTIEMSLNDDGSVTVSDNGRGIPVDMHPQKKKSALELVMTVIGAGGKFDKGAYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS W ++ + R+G ++   +  G+    + + G   + TGT+ TF+P
Sbjct: 120 GGLHGVGASVVNALSEWCEVEVSRDGKVWYQRYHRGVPQCEVKIIGET-DKTGTKTTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IF   +F  D +  R+REL+FLNS ++I + D    E    T  Y+GGI+ FV+Y D
Sbjct: 179 DASIFKTTEFRKDVIIDRMRELAFLNSVLKIVVKDTDDSE---ETFHYEGGIKEFVTYTD 235

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            ++  L++ P+ + G RD   +++A+++ND Y ENV  + NNI   +GGTH++G R ALT
Sbjct: 236 HNRIALVKEPVYLYGERDTTVVEIALQYNDSYQENVFSYVNNINTHEGGTHMTGFRKALT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y +K+   K  K S+ GDD +EG T+++S+K+ +P+F  QTK KL +SE +S+VE
Sbjct: 296 RTLNAYAQKNDLLKNLKLSLTGDDFKEGLTAIISVKVAEPQFEGQTKTKLGNSETQSIVE 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S VN+ L+ +LE +P   K I++KV  A++ RDAAR+A++LTRRK VL+   LPGKLADC
Sbjct: 356 SIVNEQLAEFLESNPNVLKTIIEKVKSAALSRDAARKAKELTRRKSVLESTGLPGKLADC 415

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S  DP+  EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  KML ++EI T+
Sbjct: 416 SINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTI 475

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALGT  G+D F  +KLRY KIIIMTDADVDGAHIRTLLLTFFFR M  LI  G ++I 
Sbjct: 476 ILALGTNFGEDEFMADKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPLIEAGKVFIA 535

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY I  GK  +Y  DE+     +     S++ +   + +      ++      +  +
Sbjct: 536 QPPLYLIKAGKEQKYAWDEDERTTIMEMMKKSQKGKTNINIQRYKGLGEMNPEQLWSTTM 595

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           D   +       +  +E   +      +        +  
Sbjct: 596 DPEHRSLLQVTVENAMEADQVFSTLMGDKVDPRREFIEK 634



 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E  +         ++      V    +      F F      I + ++       L LI
Sbjct: 484 GEDEFMADKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPLIEAGKVF-IAQPPLYLI 542

Query: 709 CNGDKIKI---TGPCSLLDTIFSIGRKG---ISMQRYKGLGEMNASQLWETTLNPDTRSL 762
             G + K        + +  +    +KG   I++QRYKGLGEMN  QLW TT++P+ RSL
Sbjct: 543 KAGKEQKYAWDEDERTTIMEMMKKSQKGKTNINIQRYKGLGEMNPEQLWSTTMDPEHRSL 602

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L+V + +A +AD +FS LMGD+V+PRREFI++N+     LD+
Sbjct: 603 LQVTVENAMEADQVFSTLMGDKVDPRREFIEKNARYVRRLDV 644


>gi|291457885|ref|ZP_06597275.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419429|gb|EFE93148.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 656

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 285/584 (48%), Positives = 392/584 (67%), Gaps = 3/584 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + +Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L GY   I+V
Sbjct: 21  SENYGADQIQILEGLEAVRKRPGMYIGTTSS-RGLHHLVYEIVDNSVDEALAGYCGEISV 79

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  D S TV D+GRGIP D+ K+ G  A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 80  TIEPDNSITVEDDGRGIPVDIQKKAGKPALEVVFTVLHAGGKFGGSGYKVSGGLHGVGAS 139

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  L +R+ R+G IY+M F  G    P+ V GS      GT V F P  +IF   
Sbjct: 140 VVNALSRKLWVRVYRDGKIYQMDFERGKTTAPMRVVGSCEPERHGTSVHFQPDPEIFEET 199

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            ++++TL+ RLRE +FL  +++I+L DKR  + +E +  ++GGI+ FVSYL+R K PL  
Sbjct: 200 VYDFETLKVRLRETAFLTRALRINLKDKREGQEQEKSFHFEGGIKEFVSYLNRGKDPLYS 259

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +D I +++AM+ ND Y EN+  F NNI   +GGTHL+G ++ALT+    Y  
Sbjct: 260 EVIYCEGEKDKIFVEVAMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYAR 319

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  + ++ G+D REG T ++S+K+ DP+F  QTK+KL +SE ++ V+S V++ L+
Sbjct: 320 QNKLLKDSEPNLSGEDIREGLTGIISVKIEDPQFEGQTKQKLGTSEAQTAVQSIVSEQLT 379

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AKI+ +K + A   R AAR+ARDLTRRK  L+   LPGKL DCS RDP   
Sbjct: 380 YFLEQNPSVAKIMCEKSILAQRARAAARKARDLTRRKSALEGVGLPGKLVDCSSRDPASC 439

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+F+VEGDSA G AK+GR+ E QA+LPLRGK+LNV++AR D++ +++EI  +ITA GTGI
Sbjct: 440 EIFIVEGDSALGPAKEGRNVETQAVLPLRGKVLNVQKARLDRIYANEEIKGMITAFGTGI 499

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FDI KLRYHKIIIMTDADVDGAHI TL+LTF +  MP LI  G +Y+ +PPL+ I 
Sbjct: 500 NED-FDITKLRYHKIIIMTDADVDGAHIATLMLTFIYNFMPELIRQGHIYLAQPPLFNIQ 558

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + K   Y   +E  ++ L                G +   +L  
Sbjct: 559 KNKKHYYAYSDEEYQNILREIGAEGTDVSRFKGLGEMDTEELAE 602



 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
            + ++  N             + +  IG +G  + R+KGLGEM+  +L ETT++P+TR+L
Sbjct: 553 PLFNIQKNKKHYYAYSDEEYQNILREIGAEGTDVSRFKGLGEMDTEELAETTMDPETRTL 612

Query: 763 LRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           LRV +   D ++ D  F+ LMGD+VEPRREFI++N+     LD+
Sbjct: 613 LRVNMAEDDRAELDLTFTTLMGDQVEPRREFIEQNAKYVNHLDV 656


>gi|332980610|ref|YP_004462051.1| DNA gyrase subunit B [Mahella australiensis 50-1 BON]
 gi|332698288|gb|AEE95229.1| DNA gyrase subunit B [Mahella australiensis 50-1 BON]
          Length = 633

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 315/636 (49%), Positives = 421/636 (66%), Gaps = 13/636 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   + +YDA  IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE L G+
Sbjct: 1   MAE---SGAYDASQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEVLAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I + ++ D S TV DNGRGIP  +H + G SA EV +T LHAG KF    YKVSGGL
Sbjct: 57  CDTIKIIIHKDNSITVEDNGRGIPVGIHPKTGRSAVEVALTMLHAGSKFGGGGYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL + +K+ G+IY   +  G     L V G   ++TGT ++F P   
Sbjct: 117 HGVGVSVVNALSEWLIVTVKQNGHIYRQRYERGKPVTDLEVIGDT-DETGTTISFKPDYQ 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F   ++NYDTL++R REL+FLN  V I+LID+R  +       Y+GGI +FV YL+++K
Sbjct: 176 VFEELEYNYDTLRNRFRELAFLNKEVTITLIDERDDKK--EEFHYEGGIVSFVEYLNKNK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +  I I G RD++ +++A+++ND Y E+V  F NNI   +GGTHLSG RSA+T+ I
Sbjct: 234 SPLHKEAIYISGMRDDVQVEVAIQYNDSYVESVYAFANNIETPEGGTHLSGFRSAMTKVI 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K ++ S+ GDD REG T+++S+K+ DP+F  QTKEKL +SEVR +V+S V
Sbjct: 294 NDYARKLNMLKPNEPSLSGDDVREGLTAIISVKLSDPQFEGQTKEKLGNSEVRGIVDSIV 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +DGLS + EEHP   KII++K + A   R+AAR+AR+LTRRK  L+  S+PGKLADCSER
Sbjct: 354 SDGLSTYFEEHPSVTKIIIEKAISAFRAREAARKARELTRRKSALESVSMPGKLADCSER 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ R D++LS++EI  +ITA
Sbjct: 414 DPKLCEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKTRLDRILSNEEIKAMITA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG+D FDI+KLRY +II MTDADVDG+HIRTLLLTFF+R M  L+ NG +YI +PP
Sbjct: 474 FGAGIGED-FDISKLRYERIICMTDADVDGSHIRTLLLTFFYRYMRPLLENGNVYIAQPP 532

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y+  +  LE  L                G +    L +       +D  
Sbjct: 533 LYKVEKGKKEYYIYSDRELEQLLTRIGRDGITVQRYKGLGEMDPVQLWDT-----TMDPA 587

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +       +  I    I  +   ++ +     +AS
Sbjct: 588 KRTMLKVSIEDAIAADEIFTILMGDNVEPRREFIAS 623



 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +        + +  S    + ++      V    +    
Sbjct: 450 ILNVEKTRLDRILSNEEIKAMITAFGAGIGEDFDISKLRYERIICMTDADVDGSHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      + +  +      +  +     +  I     L   +  IGR GI++QRYK
Sbjct: 510 LTFFYRYMRPLLENGNVYIAQPPLYKVEKGKKEYYIYSDRELEQLLTRIGRDGITVQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-LPS 799
           GLGEM+  QLW+TT++P  R++L+V I DA  AD++F+ LMGD VEPRREFI  N+ L  
Sbjct: 570 GLGEMDPVQLWDTTMDPAKRTMLKVSIEDAIAADEIFTILMGDNVEPRREFIASNAHLVK 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|333029415|ref|ZP_08457476.1| DNA gyrase, B subunit [Bacteroides coprosuis DSM 18011]
 gi|332740012|gb|EGJ70494.1| DNA gyrase, B subunit [Bacteroides coprosuis DSM 18011]
          Length = 652

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 299/603 (49%), Positives = 395/603 (65%), Gaps = 16/603 (2%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++        SY ADSIQ+L+GL+AV+KRP+MYIGDT    GLHH++YEV+DN+IDE+L
Sbjct: 1   MTEEQIQANKGSYKADSIQVLEGLEAVRKRPAMYIGDTS-LKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIPTD H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIDVTINEDNSITVKDNGRGIPTDFHEKEQRSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +   + R G  Y   +  G    P+   G   +DTGT+ TF P
Sbjct: 120 GGLHGVGVSCVNALSTRMITEVSRNGITYRQEYACGKPQYPVKEVG-TTDDTGTKQTFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFV 233
              IF+V  ++YD L  R+REL+FLN+ ++ISL DKR+       +  +   K G++ FV
Sbjct: 179 DPTIFTVLVYSYDILATRMRELAFLNAGLKISLTDKRTQNEDGTYKSESFQSKEGLKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y+D  ++ L+   I +   +  + I++A+ +N  + EN+  + NNI   +GGTHL+G R
Sbjct: 239 RYIDSSREHLVNDVIYLNTEKQGVPIEVAIMYNTSFSENIHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E +    K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDNKLLDKIKVDISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNTEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR+L +RK  +    LPGK
Sbjct: 359 GAVDQAVGEALNYYLEEHPREAKTIVDKVILAATARHAARKARELVQRKSPMSGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCSE++P+  ELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A + K L S+E
Sbjct: 419 LADCSEKNPEICELFLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMYHKALESEE 478

Query: 474 IGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  + TALG  IG +         KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I
Sbjct: 479 IRNIYTALGVTIGTEEDSKEANLEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQMI 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKND 586
            NG+LYI  PPLY   +GK+ +Y   EE    ++ N     E           G ++ + 
Sbjct: 539 QNGYLYIATPPLYLCRKGKTEEYCWTEEQRLAFINNYGGGSESGIHIQRYKGLGEMNAHQ 598

Query: 587 LRN 589
           L  
Sbjct: 599 LWE 601



 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 89/203 (43%), Gaps = 11/203 (5%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+       E  + I  +L   +    +      EK  +  I      
Sbjct: 456 LPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKEANLEKLRYHKI------ 509

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSL 722
           +      V    +      F F    + I +  +       L L   G   +        
Sbjct: 510 IIMTDADVDGSHIDTLIMTFFFRYMPQMIQNGYLY-IATPPLYLCRKGKTEEYCWTEEQR 568

Query: 723 LDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           L  I + G     GI +QRYKGLGEMNA QLWETT++PD R L +V I +AS AD +FS 
Sbjct: 569 LAFINNYGGGSESGIHIQRYKGLGEMNAHQLWETTMDPDNRMLKQVTIDNASDADRIFSM 628

Query: 780 LMGDEVEPRREFIQENSLPSALD 802
           LMG++V PRREFI+EN+  + +D
Sbjct: 629 LMGEDVGPRREFIEENATYANID 651


>gi|224536623|ref|ZP_03677162.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521714|gb|EEF90819.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 653

 Score =  625 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/604 (46%), Positives = 391/604 (64%), Gaps = 17/604 (2%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++   N  N SY A++IQ+L+GL+AV+KRP+MYIGD     GLHH++YEV+DN+IDE+L
Sbjct: 1   MTEEQINSNNGSYSAENIQVLEGLEAVRKRPAMYIGDIS-TKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +  ++ R G IY+  +  G    P+   G   + TGT   F P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYPVKEIG-TSDITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFV 233
            + IF+   +NY+ L  R+REL++LN+ ++I+L D R  +     +    + + G++ FV
Sbjct: 179 DNTIFTETVYNYEILATRMRELAYLNAGIKITLTDLRVKDEENNAKMEVFYSEEGLKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y+D  ++ L+   I I   +    +++A+ +N  Y+EN+  + NNI   +GGTHL+G R
Sbjct: 239 RYIDSSREHLVNDVIYINTEKQGTPVEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E +   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL +SEV 
Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK++V KV+ A+  R AAR+AR+  +RK  +    +PGK
Sbjct: 359 GAVDQAVGEALNYYLEEHPKEAKMVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS +DP++ ELFLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           +  +I ALG   G         +I+KLRY K+IIMTDADVDG+HI TL++T FFR  P +
Sbjct: 479 VNNIIQALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQV 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585
           I NG+LYI  PPLY   +GK  +Y   ++  + ++       E  +        G ++  
Sbjct: 539 IRNGYLYIATPPLYLCKKGKVEEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPE 598

Query: 586 DLRN 589
            L +
Sbjct: 599 QLWS 602



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 51/66 (77%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLW TT+NP+ R L ++ I +A++ D +FS LMG++V PRR+FI++N+
Sbjct: 587 QRYKGLGEMNPEQLWSTTMNPENRMLKQISIENAAEVDYIFSMLMGEDVGPRRDFIEKNA 646

Query: 797 LPSALD 802
             + +D
Sbjct: 647 TYANID 652


>gi|167038684|ref|YP_001661669.1| DNA gyrase subunit B [Thermoanaerobacter sp. X514]
 gi|300913756|ref|ZP_07131073.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X561]
 gi|307723227|ref|YP_003902978.1| DNA gyrase subunit B [Thermoanaerobacter sp. X513]
 gi|166852924|gb|ABY91333.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter sp. X514]
 gi|300890441|gb|EFK85586.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X561]
 gi|307580288|gb|ADN53687.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X513]
          Length = 633

 Score =  625 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 308/584 (52%), Positives = 410/584 (70%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++ +Y A  IQIL+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I 
Sbjct: 3   KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D+GRGIPTD+H + G  A EV +T LHAGGKFN  +YKVSGGLHGVGV
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L++ +K+ G I+  ++  G+    L + G       T +TF P  +IF   
Sbjct: 122 SVVNALSEKLEVVVKQRGKIFRQTYERGVPKTDLEIIGETEETG-TTITFKPDKEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FNYD L  RLREL+FLN  + I LID+R  +       Y+GGI +FV YL+R+K+ L +
Sbjct: 181 VFNYDVLAQRLRELAFLNKGINIRLIDERDGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++    +  +++ M++ND Y EN+  F NNI  ++GGTHL G +SALT+ I  Y  
Sbjct: 239 EPIYMEAKNTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSALTKVINDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K +++++ G+D REG T+++S+K+ +P+F  QTK KL +SE+RS+VE+ V + LS
Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVIEKLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           A+LEE+P  AK+IV+K   A+  R+AAR+AR+LTRRK  L+  +LPGKLADCSE+DP K 
Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAK GR+   QAILPLRGKILNVE+AR DK+LS++EI  +ITALGTGI
Sbjct: 419 ELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M  LI NG +YI +PPLY IT
Sbjct: 479 G-DEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +GK + Y   +  L+  L                G ++ + L +
Sbjct: 538 KGKKVYYAYSDRELDRILNEIGRENYTVQRYKGLGEMNADQLWD 581



 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +       +  S      +V      V    +    
Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  +              L   +  IGR+  ++QRYK
Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKITKGKKVYYAYSDRELDRILNEIGRENYTVQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLW+TT++P+ R++L+V + DA  AD++F+ LMGD+VEPRREFI++++    
Sbjct: 570 GLGEMNADQLWDTTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKHAKTVR 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|251794042|ref|YP_003008773.1| DNA gyrase subunit beta [Paenibacillus sp. JDR-2]
 gi|247541668|gb|ACS98686.1| DNA gyrase, B subunit [Paenibacillus sp. JDR-2]
          Length = 635

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 308/645 (47%), Positives = 426/645 (66%), Gaps = 18/645 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE+L GY
Sbjct: 1   MS---QQNTYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV DNGRGIP   + +   S  EV+MT LHAGGKF  + YKVSGGL
Sbjct: 57  CTKIQVRVHEDNSITVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGEGYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + + +K  GN+Y+  +  G+    + + G + ++TGT V F P  +
Sbjct: 117 HGVGVSVVNALSEHVTVTVKLHGNVYQQEYRRGVPQYDVKIIGES-DETGTTVKFKPDPE 175

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    + Y+TLQ R+REL+FLN  ++I LID+R+      +  Y GGI  FV +L+R+
Sbjct: 176 IFTDTTVYEYETLQSRIRELAFLNKGLEIELIDERTGTSN--SFKYDGGIIEFVKHLNRN 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ + + PI ++GS+D+I +++++++NDGY EN+  F NNI   +GGTH SG +SALTR 
Sbjct: 234 KEVMHEEPIYVEGSKDHIQVEVSLQYNDGYTENIHSFANNINTHEGGTHESGFKSALTRI 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K +  +  GDD REG T+++S+K+P+P+F  QTK KL +SEVR +VESF
Sbjct: 294 INDYARKTGLIKDNDSNFSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESF 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + L  +L+E+P  ++ IV+K L A+  R+AAR+AR+LTRRK  L+++SLPGKLADCS 
Sbjct: 354 FAEKLQEFLDENPSVSRKIVEKGLQAARAREAARKARELTRRKSALEVSSLPGKLADCSS 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVERAR D++L + EI  +IT
Sbjct: 414 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVERARLDRILGNAEIRAIIT 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG D FD+ K RYHK+IIMTDADVDGAHIRTL+LTFFFR M  +I  G++YI +P
Sbjct: 474 ALGTGIG-DDFDLAKARYHKVIIMTDADVDGAHIRTLMLTFFFRYMRKIIEAGYIYIAQP 532

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKID 598
           PL+ I R K ++Y + E+  E+ +       ++        G ++   L         +D
Sbjct: 533 PLFKIERNKVIRYAQSEKEREEIIAEFGEGAKVNVQRYKGLGEMNATQLWET-----TMD 587

Query: 599 KLIKDFYPNHDKTFIEQAVISGVF---NCESDQEINVSLASKLAN 640
              +       +  IE  VI       N E  ++     A  + N
Sbjct: 588 PESRTMLQVSIEDAIEADVIFDTLMGDNVEPRRDFIQQFAKDVKN 632



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 13/208 (6%)

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                          +E+A +  +      + I  +L + + +  +    +  K      
Sbjct: 439 RHFQAILPLRGKILNVERARLDRILGNAEIRAIITALGTGIGDDFDLAKARYHK------ 492

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
                ++      V    +      F F    K I +  I      +  +  N       
Sbjct: 493 -----VIIMTDADVDGAHIRTLMLTFFFRYMRKIIEAGYIYIAQPPLFKIERNKVIRYAQ 547

Query: 718 GPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 + I   G    +++QRYKGLGEMNA+QLWETT++P++R++L+V I DA +AD +
Sbjct: 548 SEKEREEIIAEFGEGAKVNVQRYKGLGEMNATQLWETTMDPESRTMLQVSIEDAIEADVI 607

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F  LMGD VEPRR+FIQ+ +     LDI
Sbjct: 608 FDTLMGDNVEPRRDFIQQFAKDVKNLDI 635


>gi|325288206|ref|YP_004264387.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271]
 gi|324963607|gb|ADY54386.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271]
          Length = 645

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 283/586 (48%), Positives = 399/586 (68%), Gaps = 4/586 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N   + Y+A  I++L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE++ G+ D 
Sbjct: 12  NSPAADYNAGQIEVLEGLEAVRKRPGMYIGSTTS-RGLHHLVYEIVDNSIDEAMAGFCDN 70

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + VT++ D S TV DNGRGIP D+H +    A EV MT LHAGGKF+  +YKVSGGLHGV
Sbjct: 71  VEVTIHNDNSITVKDNGRGIPVDIHPKMKKPAVEVAMTILHAGGKFSGDAYKVSGGLHGV 130

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS WLK+ +K  G  Y+  +  G     L   G+    TGT+++F P + IF 
Sbjct: 131 GMSVVNALSEWLKVEVKINGIRYQQEYSRGKPLYDLKEAGTYKGRTGTQISFKPDAQIFE 190

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              ++Y+ L+ RL+ELSFLN ++ I+L D+R+         + GGI  +V YL+R+K  +
Sbjct: 191 DVIYDYEVLEQRLKELSFLNKNIGIALKDERTG--AGELFKHSGGIVDYVKYLNRNKDAI 248

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI  +  ++   +++A ++NDGY EN+  + NNI   +GGTH +G ++ALTR I  Y
Sbjct: 249 QPKPIYFEAQKEENIVEIAFQYNDGYSENIYSYANNINTTEGGTHEAGFKAALTRVINDY 308

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K ++ ++ G+D REG T+++S+K+ +P+F  QTK KL +SE+RS+V+S + DG
Sbjct: 309 ARKNNILKANENNLSGEDVREGLTAIISVKVREPQFEGQTKTKLGNSEMRSIVDSILGDG 368

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS + EE+P  AK IV+K L A+  R AAR+ARDLTRRK  LD  SLPGKLADC+ ++ +
Sbjct: 369 LSTFCEENPSVAKKIVEKGLQATRARMAARKARDLTRRKNALDSTSLPGKLADCAWKEAQ 428

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             E++LVEGDSAGGSAKQGR ++ QAILPLRGKILNVE+AR D++L+++EI  +ITA+GT
Sbjct: 429 FCEIYLVEGDSAGGSAKQGRDQKFQAILPLRGKILNVEKARLDRILANEEIRAMITAMGT 488

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  D F++ K RY+KI+IMTDADVDG+HIR LLLTFF+R M  L+ N ++YI +PPL+ 
Sbjct: 489 GI-SDDFNLEKARYNKIVIMTDADVDGSHIRILLLTFFYRYMKPLLENNYVYIAQPPLFQ 547

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I +GK +QY   +E L   L                G ++   L  
Sbjct: 548 IKKGKEIQYAYSDEELNHILEMIGRERVEIQRYKGLGEMNPEQLWE 593



 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +       ++      + +V      V    +    
Sbjct: 462 ILNVEKARLDRILANEEIRAMITAMGTGISDDFNLEKARYNKIVIMTDADVDGSHI--RI 519

Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQR 738
            + +F  +Y + +  N         L  I  G +I+       L+ I   IGR+ + +QR
Sbjct: 520 LLLTFFYRYMKPLLENNYVYIAQPPLFQIKKGKEIQYAYSDEELNHILEMIGRERVEIQR 579

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT+NP+TR++L+VK+ DA +A++LF+  MGD+V+PR+E+IQ+ +  
Sbjct: 580 YKGLGEMNPEQLWETTMNPETRTILQVKMEDARRAEELFTIFMGDKVDPRKEYIQKYAKD 639

Query: 799 S-ALDI 803
              LDI
Sbjct: 640 VKNLDI 645


>gi|289450191|ref|YP_003474441.1| DNA gyrase subunit B [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184738|gb|ADC91163.1| DNA gyrase, B subunit [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 696

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 288/589 (48%), Positives = 394/589 (66%), Gaps = 4/589 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D   NS Y    IQ+L+GL+AV+KRP MYIGDT    GLHH++YE++ N++DE+L G  D
Sbjct: 59  DTSNNSKYSESDIQVLEGLEAVRKRPGMYIGDT-TLRGLHHLVYEIVANSVDEALAGRCD 117

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           +I +T+N DGS TV D+G GIP  +H  +GI   EV+ T LHAGGKF   +Y VSGGLHG
Sbjct: 118 MIYLTINHDGSITVEDDGSGIPIGIHPTKGIPTVEVVHTILHAGGKFGGGAYSVSGGLHG 177

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDI 181
           VG SVVNALS W+ + +KREGNIY++SF  G++  PL + G    N+TGT+  F+P  +I
Sbjct: 178 VGASVVNALSEWMDVYVKREGNIYKISFARGVVTEPLKIIGHCPINETGTKTVFMPDKEI 237

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRHK 240
           F    FNYD +  R RE++FLN  + I   D+R  E      + Y GGI +FV Y++ HK
Sbjct: 238 FPDIHFNYDNMLTRYREMAFLNKEITIVFRDERPEEEVVEKVLHYDGGIISFVEYMNLHK 297

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL   PI    S +N  +++A+++N+ Y EN+  + NNI   +GGTHL+G +SA+T+ I
Sbjct: 298 EPLFPKPIYFASSINNSYVEVALQYNNTYAENIYSYANNIATPEGGTHLTGFKSAITKVI 357

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K + +++ G+DCREG T ++S+K+P+P+F  QTK KL +SE+R++VES +
Sbjct: 358 NDYARKYGFLKTNDKNLQGEDCREGLTCIVSVKLPEPQFEGQTKSKLGNSEMRTLVESMI 417

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ND    +LEE+P  AKII++K + AS  RDAA++AR++TRRK   D  SLPGKL DC E 
Sbjct: 418 NDKFPVFLEENPAIAKIIMEKCISASRARDAAKKAREMTRRKNTFDSVSLPGKLVDCQEN 477

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E+F+VEGDSAGG+AK GR R+ QAILPL GK+LNVER+R DK+ ++ ++  ++ A
Sbjct: 478 DPTLCEIFIVEGDSAGGNAKGGRERKYQAILPLWGKMLNVERSRVDKVYNNSKLSPIVMA 537

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG D FD+NKLRY+K+IIM DADVDGAHIRTLLLTFFFR M  L+  G ++I  PP
Sbjct: 538 LGTGIG-DEFDLNKLRYNKVIIMADADVDGAHIRTLLLTFFFRHMKPLVEKGHVFIACPP 596

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           L+ +     + Y  DE  +E     Q   +         G +    L  
Sbjct: 597 LFKVENDNQVFYAYDEAGVEKIKQEQGWDKPKLQRYKGLGEMDAEQLWE 645



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 53/67 (79%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT+NP TR LLRV + DA  AD  F+ LMG+EV+PR++FIQ N
Sbjct: 629 LQRYKGLGEMDAEQLWETTMNPATRKLLRVDLEDAQSADQTFNLLMGEEVKPRKDFIQAN 688

Query: 796 SLPSALD 802
           +  + LD
Sbjct: 689 AKYALLD 695


>gi|325299173|ref|YP_004259090.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170]
 gi|324318726|gb|ADY36617.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170]
          Length = 654

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 284/605 (46%), Positives = 388/605 (64%), Gaps = 18/605 (2%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+ +     ++Y A SIQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L
Sbjct: 1   MSEELTPKGGNTYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCTHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +   + R G IY+  +  G    P+   G   + TGT  TF P
Sbjct: 120 GGLHGVGVSCVNALSTHMITNVFRNGKIYQQEYACGKPLYPVKEVG-TTDITGTRQTFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFV 233
            + IF+V ++ Y+ LQ R+REL++LN  + I+L DKR  E     ++     + G++ FV
Sbjct: 179 DASIFTVTEYKYNILQARMRELAYLNKGITITLTDKREKEEDGSYKQEVFHSEEGVKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+    PL+   I +   +  + I+ A+ +N G+ EN+  + NNI   +GGTH +G R
Sbjct: 239 RFLNSTNTPLIDDVIYLNTEKQGVPIECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y E S   +K K  + G+D REG  +V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 TALTRVLKKYAEDSKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVS 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V   V + L+ +LEEHP EAK+IV KV+ A+  R AAR+AR+  +RK  +    LPGK
Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKLIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R P++ ELFLVEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSRTPEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +I ALG   G          +I+KLRY+K+IIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 VNNIIQALGVRFGVDDSEDSKKANIDKLRYNKVIIMTDADVDGSHIDTLIMTLFYRYMPE 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISK 584
           +I  G LYI  PPLY  ++GK  +Y   +E  + ++       E           G ++ 
Sbjct: 539 VIQGGHLYIANPPLYKCSKGKVSEYCYTDEERQAFMQKYGDGTETGIHTQRYKGLGEMNP 598

Query: 585 NDLRN 589
             L  
Sbjct: 599 EQLWE 603



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 56/70 (80%)

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           GI  QRYKGLGEMN  QLWETT+NP+TR L +V I +A++AD +FS LMGD+V PRREFI
Sbjct: 584 GIHTQRYKGLGEMNPEQLWETTMNPETRILKQVSIENAAEADYIFSMLMGDDVAPRREFI 643

Query: 793 QENSLPSALD 802
           ++++  + +D
Sbjct: 644 EKHATYANID 653


>gi|255659815|ref|ZP_05405224.1| DNA gyrase, B subunit [Mitsuokella multacida DSM 20544]
 gi|260847890|gb|EEX67897.1| DNA gyrase, B subunit [Mitsuokella multacida DSM 20544]
          Length = 688

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 304/583 (52%), Positives = 402/583 (68%), Gaps = 4/583 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y A+ IQIL+GL+AV+ RP MYIG T  E GLHH++YEV+DN+IDE+L GY D I V
Sbjct: 58  EADYGAEQIQILEGLEAVRMRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALAGYCDHIDV 116

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S TV DNGRGIP D+H E G  A EV++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 117 TIHKDNSITVVDNGRGIPVDMH-ESGKPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVS 175

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ +++++KR+G IYE++F  G+   PL V G+      T V F+P  +IFSV  
Sbjct: 176 VVNALSTSMEVQVKRDGKIYEIAFERGVTTKPLTVVGTTTETG-TRVHFMPDPEIFSVTT 234

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++Y+TL+HRLRELSFLN  + I L D+R    R     + GGI +FV +L+R K+ L   
Sbjct: 235 YSYETLRHRLRELSFLNHGITIGLHDERVEPVRSEQFHFDGGISSFVEHLNRKKEVLNPE 294

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI   G +D+  +++AM++ND Y EN+  F NNI  ++GGTHL+G + ALTR    +  K
Sbjct: 295 PIYFNGVKDDTVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKLALTRAANDFARK 354

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K    ++ GDD REG T V+S+K+ +P+F  QTK KL +SEVR +V+S V +GLS 
Sbjct: 355 QGILKDKDSNLSGDDVREGLTCVISLKIREPQFEGQTKTKLGNSEVRGIVDSIVTEGLSE 414

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + +E+P   K I+ K + A+  R+AAR+AR+LTRRK  L+++SLPGKLADCS +DP+++E
Sbjct: 415 YFDENPAITKRIIDKAIMAARAREAARKARELTRRKNALEVSSLPGKLADCSVKDPEQAE 474

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+ ++ EI T+ITA GTGI 
Sbjct: 475 IYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI- 533

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            + FD++K RY KIIIMTDADVDGAHIRTLLLTF +R M  LI +G +YI +PPLY I +
Sbjct: 534 SEDFDLSKRRYGKIIIMTDADVDGAHIRTLLLTFLYRYMKPLIEHGHVYIAQPPLYQIRK 593

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           GK   Y   ++ L   L                G ++   L  
Sbjct: 594 GKKHWYTYSDDELSKKLDEVGRDGVTVQRYKGLGEMNPEQLWE 636



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +        + +  S      ++      V    +   +
Sbjct: 505 ILNVEKARLDKIFANAEIRTMITAFGTGISEDFDLSKRRYGKIIIMTDADVDGAHI--RT 562

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSL-ICNGDKI-KITGPCSLLDTIFSIGRKGISMQR 738
            + +F  +Y +                 I  G K         L   +  +GR G+++QR
Sbjct: 563 LLLTFLYRYMKPLIEHGHVYIAQPPLYQIRKGKKHWYTYSDDELSKKLDEVGRDGVTVQR 622

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++P+ R++LRV++ DA +AD+LF+ LMGD+VEPRR+FI+EN+  
Sbjct: 623 YKGLGEMNPEQLWETTMDPEGRTMLRVEMEDAEEADELFTILMGDKVEPRRQFIEENAKL 682

Query: 799 S-ALDI 803
              LDI
Sbjct: 683 VRNLDI 688


>gi|255994573|ref|ZP_05427708.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989]
 gi|255993286|gb|EEU03375.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989]
          Length = 651

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 298/599 (49%), Positives = 410/599 (68%), Gaps = 7/599 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ I    Y A+ IQ+L+GL+ V+KRP MYIG T G+ GLHH++YE++DN+IDE+L G+
Sbjct: 12  MSEKIDKK-YGAEEIQVLEGLEPVRKRPGMYIGST-GKPGLHHLVYEIVDNSIDEALAGH 69

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGG 119
            + I + +N DGS  V DNGRG+P D+H ++ I A EVI + LHAGGKF+    YKVSGG
Sbjct: 70  CNEIKICINEDGSIRVEDNGRGMPVDIHPKQKIPAVEVIHSILHAGGKFDENGGYKVSGG 129

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALSS ++++IKR GN+Y+  +  G     L + G    +TG+   F+P  
Sbjct: 130 LHGVGASVVNALSSRMEVKIKRNGNLYKQEYSRGKTMTKLEIIG-TSTETGSITEFMPDD 188

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF   +F+YDTL +R RE++FLN  ++I L DKR    +  T  Y+GGI+ F+ Y +++
Sbjct: 189 QIFDDIEFDYDTLNYRFREMAFLNKGLKIQLEDKRKGREKTNTYCYEGGIKEFIKYQNKN 248

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L +  I      DN  +++A+++ D Y E +L + NNI   +GG HLSG +SALTR 
Sbjct: 249 KEKLHEDIIFFDKKLDNSQVEVAIQYTDRYSETLLSYANNINTTEGGYHLSGFKSALTRV 308

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y +K+    ++  S++G+D REG T+++S+K+ +P+F  QTK KL +S +R VVE+ 
Sbjct: 309 INDYAKKAKLIGENDNSLLGEDVREGLTAIISVKLTNPQFEGQTKTKLGNSFIRGVVETA 368

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ + A+L EHP +AKII++K + ++ VR+AA++ARDLTRRK  LD  +LPGKL+DCSE
Sbjct: 369 VNENVYAFLIEHPKQAKIIIEKCIKSARVREAAKKARDLTRRKTALDSLALPGKLSDCSE 428

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DPK SE+FLVEGDSAGGSA+QGR R  QA+LPLRGKILNVE+AR DK+LSS+EI  +IT
Sbjct: 429 KDPKLSEIFLVEGDSAGGSARQGRDRNRQAVLPLRGKILNVEKARLDKILSSEEIKNMIT 488

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A G GIG D F+++KLRYHKIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +Y  +P
Sbjct: 489 AFGCGIG-DDFELDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMMPLVEAGHVYAAQP 547

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           PLY + +GK   Y   E   +  + N      +         G +  N L     D  K
Sbjct: 548 PLYKVKKGKKEYYTYSENEQKKLMKNLAEQGGKSDIQRYKGLGEMDYNQLWETTMDYDK 606



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 84/480 (17%), Positives = 164/480 (34%), Gaps = 26/480 (5%)

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLE-AKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
            S+E  S+ E   +D +   +E           +       ++      R    +     
Sbjct: 174 TSTETGSITEFMPDDQIFDDIEFDYDTLNYRFREMAFLNKGLKIQLEDKRKGREKTNTYC 233

Query: 407 IASLPGKLADCSERDPKKSELFLVEGD-----SAGGSAKQGRSRENQAILPLRGKILNVE 461
                 +      ++ +K    ++  D     S    A Q   R ++ +L     I   E
Sbjct: 234 YEGGIKEFIKYQNKNKEKLHEDIIFFDKKLDNSQVEVAIQYTDRYSETLLSYANNINTTE 293

Query: 462 RARFDKMLSSQEIGTLITALG----TGIGQDSFDINKLRYHKIII----MTDADVDGAHI 513
                    S     +          G   +S     +R     I    +T+   +G   
Sbjct: 294 GGYHLSGFKSALTRVINDYAKKAKLIGENDNSLLGEDVREGLTAIISVKLTNPQFEG-QT 352

Query: 514 RTLLLTFFFRQMPSLIHNGFLY---IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           +T L   F R +     N  +Y   I  P    I   K ++  +  E+ +          
Sbjct: 353 KTKLGNSFIRGVVETAVNENVYAFLIEHPKQAKIIIEKCIKSARVREAAKKARDLTRRKT 412

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESD 627
            ++       +   ++    + +   ++           +    QAV+     + N E  
Sbjct: 413 ALDSLALPGKLSDCSEKDPKLSEIFLVEGDSAGGSARQGRDRNRQAVLPLRGKILNVEKA 472

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
           +   +  + ++ N +          +         ++      V    +      F +  
Sbjct: 473 RLDKILSSEEIKNMITAFGCGIGDDFELDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRY 532

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGE 744
               + +  +      +  +     +           L+  +   G K   +QRYKGLGE
Sbjct: 533 MMPLVEAGHVYAAQPPLYKVKKGKKEYYTYSENEQKKLMKNLAEQGGKS-DIQRYKGLGE 591

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           M+ +QLWETT++ D R+L+++ + DAS ADD+F+ LMGD+V PR++FI+EN+     LDI
Sbjct: 592 MDYNQLWETTMDYDKRTLIQITVEDASAADDIFTTLMGDKVPPRKKFIEENARYVKNLDI 651


>gi|269925173|ref|YP_003321796.1| DNA gyrase, B subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269788833|gb|ACZ40974.1| DNA gyrase, B subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 640

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 314/593 (52%), Positives = 413/593 (69%), Gaps = 9/593 (1%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+  +    S+Y+A+SIQ+L+GL+AV+KRP MYIG TD   GLHH+IYE++DN++DES+ 
Sbjct: 1   MAQLEEKVISNYNAESIQVLEGLEAVRKRPGMYIGSTD-VRGLHHLIYEIVDNSVDESMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I V ++ D S TV DNGRGIP  +H +   SA EV+MT LHAGGKF    YKVSG
Sbjct: 60  GYCDFIEVHIHKDKSVTVRDNGRGIPVGIHPKLKKSALEVVMTVLHAGGKFGSGGYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG SVVNALS +L   + REG I+  S+  G+   P+   G   + TGT +TF P 
Sbjct: 120 GLHGVGASVVNALSEYLIAEVHREGKIWRQSYERGVPKTPVEAIGDT-DRTGTIITFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +D+FS  ++ +DTL  R RE+++LN  ++I+ ID R  +   +    +GGI +FV +L++
Sbjct: 179 ADLFSTLEYQFDTLAQRFREIAYLNKGLKITFIDDRDDKELTLYF--EGGIASFVRHLNK 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           ++  L + PI I    + I +++A+++ DG++E++  FTNNI   DGGTHL+G R+ALTR
Sbjct: 237 NRNVLTEKPIYIHKQLNGIDVEVAIQYTDGFNESLHTFTNNINTVDGGTHLTGFRTALTR 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y  K+   K     + G+D REG T+V+S+K+PDP+F  QTK KL SSE   VV S
Sbjct: 297 TLNDYAVKNGLLKDSDTKLTGEDVREGLTAVVSVKLPDPQFEGQTKSKLGSSEAERVVAS 356

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V DGL ++ +E+P +AK I++K + A+  R+AAR+ARDL  RKG LD  +LPGKLADCS
Sbjct: 357 VVRDGLLSYFDENPSDAKRIIEKAITAARAREAARKARDLVVRKGALDGMTLPGKLADCS 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ERDP+ SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DKMLSS EI  LI
Sbjct: 417 ERDPRHSELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKMLSSAEIKALI 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGIG DSFDI+KLRYH+I +MTDADVDGAHIRTLLLTFFFR MP +I NG LYI  
Sbjct: 477 TALGTGIG-DSFDISKLRYHRIFLMTDADVDGAHIRTLLLTFFFRHMPDIIKNGHLYIAM 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY I  GK   +V  +E  +  L  +N + S+ I       G ++   L  
Sbjct: 536 PPLYKIQVGKEKYFVYSDEERDRVLAGLNGNRSKAIIQRYKGLGEMNPEQLWE 588



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 15/139 (10%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
               L  +  F       +  +  +      +  +    +K  +       D + +    
Sbjct: 509 HIRTLLLTFFFRHMPDIIK--NGHLYIAMPPLYKIQVGKEKYFVYSDEER-DRVLA---- 561

Query: 733 GIS-------MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           G++       +QRYKGLGEMN  QLWETT++P TR++++V I DA +AD+LF  LMG  V
Sbjct: 562 GLNGNRSKAIIQRYKGLGEMNPEQLWETTMDPSTRTIMQVTIEDAVKADELFDMLMGSNV 621

Query: 786 EPRREFIQENSLPS-ALDI 803
            PR++FIQ ++     LDI
Sbjct: 622 APRKKFIQSHAKSVRNLDI 640


>gi|170077957|ref|YP_001734595.1| DNA gyrase subunit B [Synechococcus sp. PCC 7002]
 gi|169885626|gb|ACA99339.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7002]
          Length = 640

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 294/641 (45%), Positives = 405/641 (63%), Gaps = 10/641 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y A  IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L GY   I V
Sbjct: 2   TSNYSAQQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAGYCTEINV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV+DNGRGIP D+H   G SA E +MT LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  EINADGSVTVTDNGRGIPVDVHPSTGKSALETVMTVLHAGGKFGAGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W+++ + R+   Y+  +  G+    L    +  + +GT V FLP + IF+   
Sbjct: 121 VVNALSEWVEVTVWRDETTYKQRYERGVPQGELTEAPAPQHLSGTSVCFLPDAKIFTETT 180

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+Y+TL  RLREL++LN+ V+I   D RS +    T FY+GGI+ +V+Y++R K PL +
Sbjct: 181 VFDYNTLAGRLRELAYLNAGVRIVFTDHRSEKQASNTYFYEGGIKEYVAYMNREKSPLHE 240

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             I + G ++ + +++A++W  D Y +N+L F NNI   DGGTHL GL+S LTR + +  
Sbjct: 241 EIIYVTGEKNGVQLEVALQWCTDAYSDNLLGFANNIRTVDGGTHLEGLKSVLTRTMNTVA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K +  ++ G++ REG T+V+S+K+PDP F  QTK KL +SEVR +V+SFV + L
Sbjct: 301 RKRNKLKDNDSNLAGENIREGLTAVISVKVPDPEFEGQTKTKLGNSEVRGIVDSFVGEVL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + E +      I++K + A    +AARRAR+L RRK VL+ + LPGKLADCSERDP K
Sbjct: 361 TEYFEFNLNVVDAILEKAIQAFKAAEAARRARELVRRKSVLESSLLPGKLADCSERDPAK 420

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E++LVEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI +LITALG G
Sbjct: 421 TEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLG 480

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  + F+  KLRYH+++IMTDADVDGAHIRTLLLTFF+R    L+  G++YI  PPLY +
Sbjct: 481 IKGEEFNPEKLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYIYIACPPLYKL 540

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            RGK+  Y   +  L+D +     + +         G +    L +       ++   + 
Sbjct: 541 ERGKNHAYCYSDRELQDQISQLPDNAKYNIQRFKGLGEMMPQQLWDT-----TMNPESRT 595

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                 +   E   I  V   +             A +LN 
Sbjct: 596 LKRVEIEDAAEADRIFTVLMGDRV-APRREFIEMNAPKLNM 635



 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           + ++        +V      V    +      F +  + + +    I      +  L   
Sbjct: 484 EEFNPEKLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYIYIACPPLYKLERG 543

Query: 711 GDKIKITGPCSLLDTIF---SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
            +         L D I       +   ++QR+KGLGEM   QLW+TT+NP++R+L RV+I
Sbjct: 544 KNHAYCYSDRELQDQISQLPDNAK--YNIQRFKGLGEMMPQQLWDTTMNPESRTLKRVEI 601

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
            DA++AD +F+ LMGD V PRREFI+ N+       LDI
Sbjct: 602 EDAAEADRIFTVLMGDRVAPRREFIEMNAPKLNMDDLDI 640


>gi|114565581|ref|YP_752735.1| DNA topoisomerase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336516|gb|ABI67364.1| DNA gyrase subunit B [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 633

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 282/590 (47%), Positives = 404/590 (68%), Gaps = 4/590 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y+A  IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE++ G+   I
Sbjct: 1   MLEREYNASDIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVFEIVDNSIDEAVAGFCKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N D S TV D+GRGIP D+H   GI A +VI+T LH+GGKF    Y +SGGLHGVG
Sbjct: 60  EVTINQDNSITVCDDGRGIPVDIHPAMGIPALQVILTTLHSGGKFGGSGYNISGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS  +++R+KR+G+IY+  +  G   N + + G +  +TGT + F    +IF  
Sbjct: 120 LSVVNALSRRMEVRVKRDGHIYQQDYERGNPVNEIRIIGESK-ETGTSICFFADDEIFEE 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F  + L  RLRELSFLN +++ISL D+R  E       Y  G++ FV+Y++++K+ + 
Sbjct: 179 INFEREILLQRLRELSFLNRNLKISLRDEREEEVFYQEFHYSHGLKDFVAYINKNKEVIN 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +PI  +  +D++ + +A+++N+ Y EN+  F NNI  ++GGTH  G ++ALTR I  Y 
Sbjct: 239 DNPIYFENKKDDVIVQVAIQYNNSYSENLYSFANNIRTQEGGTHEIGFKNALTRVINDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +K+   K++  ++ G+D REG  +++S+ + DP+F  QTK KL ++ +R +VES V + +
Sbjct: 299 KKNNILKENDNNLSGEDIREGIAAIISVLVKDPQFEGQTKTKLGNTYIRGIVESIVFEHV 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P  A+ ++ K + A   R+AA++AR+LTRRK  L+  +LPGKLADCS ++P +
Sbjct: 359 EDYLNENPAAARKLLDKAISARRAREAAKKARELTRRKNALESTALPGKLADCSNKNPAE 418

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++LSS+EI  LITA+GTG
Sbjct: 419 SELFIVEGDSAGGSAKQGRDRTYQAILPLRGKILNVEKARLDRVLSSEEIRNLITAMGTG 478

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D FDI K RYHK+ IMTDADVDG+HIR LLLTFF+R M  LI  G+LYI +PPLYG+
Sbjct: 479 IGED-FDIKKARYHKLFIMTDADVDGSHIRVLLLTFFYRYMKELIEEGYLYIAQPPLYGL 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
            RGK ++Y  ++  L  +L      +         G +    L     DA
Sbjct: 538 KRGKEIKYFYNDADLNAFLSQTE-QKWSIQRYKGLGEMDPEQLWTTTMDA 586



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 112/273 (41%), Gaps = 21/273 (7%)

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I         +       +        L  +      +   +S+  I + D         
Sbjct: 377 ISARRAREAAKKARELTRRKNALESTALPGKLADCSNKNPAESELFIVEGDSAGGSAKQG 436

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           +                +E+A +  V + E  + +  ++ + +    +    +  K +  
Sbjct: 437 RDRTYQAILPLRGKILNVEKARLDRVLSSEEIRNLITAMGTGIGEDFDIKKARYHKLFIM 496

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNG 711
           +  + D    R+              + +F  +Y       IEE YL      L  +  G
Sbjct: 497 TDADVDGSHIRV-------------LLLTFFYRY---MKELIEEGYLYIAQPPLYGLKRG 540

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
            +IK     + L+   S   +  S+QRYKGLGEM+  QLW TT++ ++R++L+V I DA 
Sbjct: 541 KEIKYFYNDADLNAFLSQTEQKWSIQRYKGLGEMDPEQLWTTTMDAESRTVLKVTIEDAI 600

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +A+D+FS LMGD V+PRREFI+ N+     LDI
Sbjct: 601 KANDIFSALMGDNVQPRREFIESNARYVANLDI 633


>gi|189464548|ref|ZP_03013333.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM
           17393]
 gi|189438338|gb|EDV07323.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM
           17393]
          Length = 653

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/604 (46%), Positives = 391/604 (64%), Gaps = 17/604 (2%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++   N  + +Y A++IQ+L+GL+AV+KRP+MYIGD     GLHH++YEV+DN+IDE+L
Sbjct: 1   MTEEQINSNSGNYSAENIQVLEGLEAVRKRPAMYIGDIS-TKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +  ++ R G IY+  +  G    P+   G   + TGT   F P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYPVKEIG-TSDITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFV 233
            + IF+   +NY+ L  R+REL++LN+ ++I+L D R  +     +    + + G++ FV
Sbjct: 179 DNTIFTDTVYNYEILATRMRELAYLNAGIKITLTDLRVKDEENNAKMEIFYSEEGLKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y+D  ++ L+   I I   +    +++A+ +N  Y+EN+  + NNI   +GGTHL+G R
Sbjct: 239 RYIDSSREHLVNDVIYINTEKQGTPVEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y + +   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL +SEV 
Sbjct: 299 RALTRTLKKYADDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK++V KV+ A+  R AAR+AR+  +RK  +    +PGK
Sbjct: 359 GAVDQAVGEALNYYLEEHPKEAKMVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS +DP++ ELFLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           +  +I ALG   G         +I+KLRY K+IIMTDADVDG+HI TL++T FFR  P +
Sbjct: 479 VNNIIQALGIRFGVNTEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQV 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585
           I NG+LYI  PPLY   +GK  +Y   ++  + ++       E  +        G ++  
Sbjct: 539 IRNGYLYIATPPLYLCKKGKVEEYCWTDQQRQKFIDTYGGGSESAVHTQRYKGLGEMNPE 598

Query: 586 DLRN 589
            L +
Sbjct: 599 QLWS 602



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLW TT+NP+ R L ++ I +A++ D +FS LMG++V PRREFI++N+
Sbjct: 587 QRYKGLGEMNPEQLWSTTMNPENRMLKQISIENAAEVDYIFSMLMGEDVGPRREFIEKNA 646

Query: 797 LPSALD 802
             + +D
Sbjct: 647 TYANID 652


>gi|224024595|ref|ZP_03642961.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM
           18228]
 gi|224017817|gb|EEF75829.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM
           18228]
          Length = 656

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 286/606 (47%), Positives = 390/606 (64%), Gaps = 18/606 (2%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+ +  +   +Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L
Sbjct: 1   MSEELTPNSGSNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCTHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFL 176
           GGLHGVGVS VNALS+ +   + R G +Y+  +  G    P+   G  A   TGT  TF 
Sbjct: 120 GGLHGVGVSCVNALSTHMTTNVFRGGKVYQQEYECGKPLYPVKEVGTCAPGMTGTRQTFW 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAF 232
           P  +IF+V ++ Y  LQ R+REL++LN  + I+L DKR  E     ++     + G++ F
Sbjct: 180 PDGNIFTVTEYKYSILQARMRELAYLNKGITITLTDKRVKEEDGSFKQEVFHSEEGVKEF 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+    PL+   I +   +  I I+ A+ +N G+ EN+  + NNI   +GGTH +G 
Sbjct: 240 VRFLNSTNTPLIDDVIYLNTEKQGIPIECAIMYNTGFRENLHSYVNNINTIEGGTHEAGF 299

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR +  Y E+S   +K K  + G+D REG  +V+S+K+ +P+F  QTK KL ++EV
Sbjct: 300 RTALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEV 359

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V   V + L+ +LEEHP EAK+IV KV+ A+  R AAR+AR+  +RK  +    LPG
Sbjct: 360 SGAVNQAVGEALTYYLEEHPKEAKVIVDKVVLAATARIAARKARESVQRKSPMGGGGLPG 419

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS R+P++ ELFLVEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+A + K   S 
Sbjct: 420 KLADCSSRNPEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESD 479

Query: 473 EIGTLITALGTGIGQDSF------DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           E+  +I ALG   G D        +I+KLRY+KIIIMTDADVDG+HI TL++T F+R MP
Sbjct: 480 EVNNIIQALGIRFGVDGDEDSKKANIDKLRYYKIIIMTDADVDGSHIDTLIMTLFYRYMP 539

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVIS 583
            +I  G LYI  PPLY  ++GK  +Y   +E  + ++       E           G ++
Sbjct: 540 EVIQGGHLYIATPPLYKCSKGKISEYCYTDEERQAFMQKYGDGSENGIHTQRYKGLGEMN 599

Query: 584 KNDLRN 589
              L  
Sbjct: 600 PEQLWE 605



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 56/73 (76%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
              GI  QRYKGLGEMN  QLWETT+NP+TR L +V I +A++AD +FS LMGD+V PRR
Sbjct: 583 SENGIHTQRYKGLGEMNPEQLWETTMNPETRMLKQVHIENAAEADYIFSMLMGDDVAPRR 642

Query: 790 EFIQENSLPSALD 802
           EFI++N+  + +D
Sbjct: 643 EFIEKNATYANID 655


>gi|198274299|ref|ZP_03206831.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM 17135]
 gi|198272789|gb|EDY97058.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM 17135]
          Length = 654

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 285/605 (47%), Positives = 386/605 (63%), Gaps = 18/605 (2%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+ +  +   +Y A SIQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L
Sbjct: 1   MSEELTQNSGSNYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCTHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +   + R G IY+  +  G     +   G   + TGT  TF P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTNVFRNGKIYQQEYECGKPLYAVKEVG-TTDITGTRQTFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFV 233
              IF+V ++ Y  LQ R+REL++LN  + I+L DKR  E     ++     + G++ FV
Sbjct: 179 DGSIFTVTEYKYSILQARMRELAYLNKGITITLTDKRVKEEDGSYKQEKFHSEEGVKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +  PL+   I +   +  I I+ A+ +N G+ EN+  + NNI   +GGTH +G R
Sbjct: 239 RFLNSNNTPLIDDVIYLNTEKQGIPIECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E+S   +K K  + G+D REG  +V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 MALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVSEPQFEGQTKTKLGNNEVS 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V   V + L+ +LEEHP EAKIIV KV+ A+  R AAR+AR+  +RK  +    LPGK
Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKIIVDKVVLAATARVAARKARESVQRKSPMGGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R  ++ ELFLVEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSRVAEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +I ALG   G          +I+KLRYHK+IIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 VNNIIQALGVRFGVDGEEDSKKANIDKLRYHKVIIMTDADVDGSHIDTLIMTLFYRYMPE 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISK 584
           +I  G LYI  PPLY  ++GK  +Y   +E+ + ++       E           G ++ 
Sbjct: 539 VIQGGHLYIATPPLYKCSKGKISEYCYTDEARQAFIQKYGEGNEQGIHTQRYKGLGEMNP 598

Query: 585 NDLRN 589
             L  
Sbjct: 599 EQLWE 603



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 5/184 (2%)

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682
           +   + +   ++   L  R     E+  K  +        ++      V    +      
Sbjct: 471 HKAFESDEVNNIIQALGVRFGVDGEEDSKKANIDKLRYHKVIIMTDADVDGSHIDTLIMT 530

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS---IG-RKGISMQR 738
             +    + I    +       L     G   +                 G  +GI  QR
Sbjct: 531 LFYRYMPEVIQGGHLY-IATPPLYKCSKGKISEYCYTDEARQAFIQKYGEGNEQGIHTQR 589

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT+NP+TR L +V I +A++AD +FS LMGD+V PRREFI++N+  
Sbjct: 590 YKGLGEMNPEQLWETTMNPETRILKQVNIENAAEADYIFSMLMGDDVGPRREFIEKNATY 649

Query: 799 SALD 802
           + +D
Sbjct: 650 ANID 653


>gi|126662002|ref|ZP_01733001.1| DNA gyrase, B subunit [Flavobacteria bacterium BAL38]
 gi|126625381|gb|EAZ96070.1| DNA gyrase, B subunit [Flavobacteria bacterium BAL38]
          Length = 646

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 287/598 (47%), Positives = 387/598 (64%), Gaps = 12/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +  SY ADSIQ L+G++ V+ RPSMYIGDT G  GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSEENKKGSYSADSIQALEGMEHVRMRPSMYIGDT-GVRGLHHLVYEVVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N D S TV DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDTIYVAINEDNSITVEDNGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L+  + REG +YE  +  G    P+   G      GT VTF P + 
Sbjct: 120 HGVGVSCVNALSDHLRATVYREGKVYEQEYERGKAMYPVKQIG-TTEKRGTMVTFKPDAT 178

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
           IF+   +++YDTL  RLRELSFLN  + I+L DKR           T   K G++ FV +
Sbjct: 179 IFTQTLEYSYDTLASRLRELSFLNKGITITLTDKRHLAEDGSQPVETFHSKEGLKEFVKF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD +++P++   I ++  +  I +++A+ +N  Y EN+  + NNI   +GGTHL G R  
Sbjct: 239 LDGNREPIISHVISMEHEKSEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTRTLKKYADSSGLLDKLKFEISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSP 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L  +LEE+P +AKIIV+KV+ A+  R AA++AR++ +RK V+    LPGKL+
Sbjct: 359 VSQAVSEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 419 DCSEQDPAKCEIFLVEGDSAGGTAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIR 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG           KLRYHK++IM DADVDG+HI TL+LTFFFR M  LI  
Sbjct: 479 NIFTALGVTIGTAEDSKALNLEKLRYHKVVIMCDADVDGSHISTLILTFFFRYMKELIEK 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           G +YI  PPLY + +G   +Y  ++   +     +             G ++   L +
Sbjct: 539 GHVYIAAPPLYLVKKGNKKEYAWNDVQRD-VANERMGGSAAIQRYKGLGEMNAEQLWD 595



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 3/124 (2%)

Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQR 738
            I +F  +Y +    +         L L+  G+K +      +   + +    G  ++QR
Sbjct: 523 LILTFFFRYMKELIEKGHVYIAAPPLYLVKKGNKKE-YAWNDVQRDVANERMGGSAAIQR 581

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMNA QLW+TTLNP+ R+  +V I   ++AD +FS LMGDEV PRREFI++N+  
Sbjct: 582 YKGLGEMNAEQLWDTTLNPENRTFRQVTIDSLAEADRVFSMLMGDEVPPRREFIEKNASY 641

Query: 799 SALD 802
           + +D
Sbjct: 642 AKID 645


>gi|225386349|ref|ZP_03756113.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme
           DSM 15981]
 gi|225047531|gb|EEG57777.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme
           DSM 15981]
          Length = 638

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 293/584 (50%), Positives = 400/584 (68%), Gaps = 4/584 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I VT
Sbjct: 3   EQYGADQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGYCDSIEVT 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N D S TV D+GRGIP  + K+ G+ A EV+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 62  INEDNSITVIDDGRGIPVGIQKKAGLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS WL++++  +GNIY+  +  G +  PL + G    ++ GT V FLP  +IF   +
Sbjct: 122 VNALSEWLEVQVYLDGNIYQQRYERGKVMYPLKIVGKCEPHEHGTHVRFLPDKEIFEETE 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YDTL+ RLRE +FL  +++I+L D R  E +E T  Y+GGI  FV+YL++ K PL + 
Sbjct: 182 FDYDTLKIRLRETAFLTKNLKITLRDDREEEVKEKTFHYEGGIREFVAYLNKGKTPLYEQ 241

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G+R+ + ++++++ ND Y E +  F NNI   +GGTHL+G ++ALT+    Y  K
Sbjct: 242 VIYCEGTREGVYVEVSLQHNDSYTEGIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARK 301

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K+++ S+ G+D REG T+++S+K+ DP+F  QTK+KL +SE R+ V++ V++ L+ 
Sbjct: 302 NKLLKENEDSLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARTAVDNVVSEQLTY 361

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LE++P  AK I +K + A   R AAR+ARDLTRRK  LD  +LPGKLADCS+++P   E
Sbjct: 362 FLEQNPSVAKSICEKSILAQRARAAARKARDLTRRKSALDGVALPGKLADCSDKNPVNCE 421

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR D++  + EI  +ITA GTGI 
Sbjct: 422 IYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAMITAFGTGIH 481

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + +
Sbjct: 482 ED-FDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKVEK 540

Query: 547 GKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
            K + Y   +E L   L +               G +    L  
Sbjct: 541 NKRIWYAYSDEELNSILTDVGRDGNNKIQRYKGLGEMDAEQLWE 584



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y       L  
Sbjct: 478 TGIHEDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYK 537

Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    +I        L   +  +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 538 VEKNKRIWYAYSDEELNSILTDVGRDGNNKIQRYKGLGEMDAEQLWETTMDPERRILLRV 597

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + D +  + D  F+ LMGD+VEPRREFI+ N+     LDI
Sbjct: 598 TMDDETQSELDLTFTTLMGDQVEPRREFIESNAKRVQNLDI 638


>gi|167764147|ref|ZP_02436274.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC
           43183]
 gi|167698263|gb|EDS14842.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC
           43183]
          Length = 653

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/604 (46%), Positives = 388/604 (64%), Gaps = 17/604 (2%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++  +    S+Y A +IQ+L+GL+AV+KRP+MYIGD     GLHH++YEV+DN+IDE+L
Sbjct: 1   MTEEEKINGESNYSASNIQVLEGLEAVRKRPAMYIGDISS-KGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +  ++ R G IY+  +  G     +   G+    TGT   F P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVGTTAI-TGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFV 233
            + IF+   ++YD L  R+REL++LN+ ++I+L D    +     ++   +   G++ FV
Sbjct: 179 DATIFTETVYSYDILATRMRELAYLNAGIKITLTDLRVKEEDGSYKQEVFYSVEGLKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y+D  ++ L+   I I   +    +++A+ +N  Y+EN+  + NNI   +GGTHL+G R
Sbjct: 239 RYIDSSREHLVNDVIYINTEKQGTPVEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E +   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + LS +LEEHP EAK+IV KV+ A+  R AAR+AR+  +RK  +    +PGK
Sbjct: 359 GAVDQAVGEALSYYLEEHPKEAKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS +DP++ ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           +  +I ALG   G         +I+KLRY K+IIMTDADVDG+HI TL++T FFR  P +
Sbjct: 479 VNNIIQALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQV 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585
           I  G+LYI  PPLY  T+GK  +Y   ++  + ++       E  +        G ++  
Sbjct: 539 IQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPE 598

Query: 586 DLRN 589
            L  
Sbjct: 599 QLWE 602



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 52/66 (78%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT+NP+ R L +V + +A++AD  FS LMG++V PRR+FI++N+
Sbjct: 587 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENAAEADYTFSMLMGEDVGPRRDFIEKNA 646

Query: 797 LPSALD 802
             + +D
Sbjct: 647 TYANID 652


>gi|312143598|ref|YP_003995044.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904249|gb|ADQ14690.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus']
          Length = 636

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 285/589 (48%), Positives = 399/589 (67%), Gaps = 5/589 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M      + Y+AD IQ+LKGL+AV+KRP MYIG T G  GLHH+++EV+DN+IDE L GY
Sbjct: 1   METLFDKTDYNADQIQVLKGLEAVRKRPGMYIGST-GIKGLHHLVWEVVDNSIDEFLAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ +   TV D GRGIP D+HK+ G+ A +V++T LHAGGKFN  SYKVSGGL
Sbjct: 60  GDEIKVTIHENNEITVEDYGRGIPADIHKDSGLPAVQVVLTTLHAGGKFNNNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L    EGN Y   F  G+  + L   G     +GT + F   SD
Sbjct: 120 HGVGVSVVNALSEKLVLTTHWEGNKYRQVFKKGVPTSKLEKLGKTK-RSGTVIRFKADSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+ +D+ ++ L HRL+E ++LN  + + LID+R    ++    Y GGI+AFV +L++ +
Sbjct: 179 IFAARDYKFENLAHRLQESAYLNKDLTLILIDERGEGEKKKVFQYDGGIKAFVEFLNKDR 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + +  I  +   ++  +++A+++NDGY+E +  + NNI   DGG HL+G ++ALTR I
Sbjct: 239 NVINEDIIYFESKPEDYEVEMAIQYNDGYNERIYSYANNINTIDGGYHLTGFKTALTRAI 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            ++ + +        S+ G D REG T+++++K+P+P+F  QTK KL +SE+RS+VES V
Sbjct: 299 NNFAKNNNRLPAKISSLRGKDVREGITAIINVKLPEPQFEGQTKTKLGNSELRSIVESEV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + LS + + +P  A  ++ K + A   R A+++AR+LT+RK  L+  +LPGKLADCS +
Sbjct: 359 YEYLSLYFDTNPDLANKVIDKAVQAVRARKASKKARELTKRKSALNSNALPGKLADCSSK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
             +KSELF+VEGDSAGGSAKQGR R  QAILPL+GKILNVERAR DK+L++ EI ++ITA
Sbjct: 419 KAEKSELFIVEGDSAGGSAKQGRDRNFQAILPLKGKILNVERARLDKILNNTEIASIITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D F+I  LRYHKIIIMTDADVDGAHI TL+LT F+R MP LI  G++Y+ KPP
Sbjct: 479 LGAGIGED-FNIKNLRYHKIIIMTDADVDGAHIATLILTLFYRYMPELIEEGYIYLAKPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY ++RGKS +Y+  ++ L +Y                 G ++   L +
Sbjct: 538 LYKVSRGKSTKYLYSDQELAEYKKKH--ENFSLQRYKGLGEMNPRQLWD 584



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 30/199 (15%)

Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672
           +E+A +  + N      I  +L + +    N    +  K           ++      V 
Sbjct: 458 VERARLDKILNNTEIASIITALGAGIGEDFNIKNLRYHK-----------IIIMTDADVD 506

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIK-ITGPCSLLDTIF 727
              +   + I +   +Y       IEE Y+      L  +  G   K +     L +   
Sbjct: 507 GAHI--ATLILTLFYRY---MPELIEEGYIYLAKPPLYKVSRGKSTKYLYSDQELAEY-- 559

Query: 728 SIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +K     S+QRYKGLGEMN  QLW+TT++P+ R LLRV+I D  +ADD+F+RLMG  
Sbjct: 560 ---KKKHENFSLQRYKGLGEMNPRQLWDTTMDPENRVLLRVEIDDDFEADDIFTRLMGSN 616

Query: 785 VEPRREFIQENS-LPSALD 802
              R+EFI  N+ L   +D
Sbjct: 617 ASLRKEFIFNNAELVQTID 635


>gi|72388567|gb|AAZ67927.1| DNA gyrase subunit B [Psychrobacter frigidicola]
          Length = 731

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 323/733 (44%), Positives = 448/733 (61%), Gaps = 53/733 (7%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HHM++EV+DN+IDE+L G+ D I + ++ D S +VSDNGRG+P D+H EEG+SAA+VIMT
Sbjct: 1   HHMVFEVVDNSIDEALAGHCDRIDIVIHDDESVSVSDNGRGVPVDIHPEEGVSAAQVIMT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y+ ++ +G+ D  +  
Sbjct: 61  VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYQQTYTDGVPDGDIQP 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
              A + TGT++ F PS+D+F+   F YD L  RLRELSFLNS V+I L D+R  +  E 
Sbjct: 121 I-EATDRTGTQIRFYPSTDVFTGTIFEYDILAKRLRELSFLNSGVRIILTDERIDKRHE- 178

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              +KGG+  FVSY++  K  + +    +    D IS+++A++W D Y+E VLCFTNNIP
Sbjct: 179 -FEHKGGLSEFVSYINAGKDGVNEVFHFVSEQADGISVEVALQWTDTYNEKVLCFTNNIP 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHLSG RSALTR + +Y+++    KK+K    GDD REG T+++S+K+PDP+FSS
Sbjct: 238 QRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKIVATGDDAREGLTAIVSVKVPDPKFSS 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEV+S VES ++D  + +L+E+P   K+I  K++DA+  RDAAR+AR++TRR
Sbjct: 298 QTKDKLVSSEVKSAVESAMHDKFNDYLQENPGAGKLIAGKIIDAARARDAARKAREMTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVE
Sbjct: 358 KTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVE 417

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           RARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTL +TFF
Sbjct: 418 RARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLKMTFF 477

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           FRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ ++         +   
Sbjct: 478 FRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTKLHVSAAAPA 537

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLA 639
           I+   L   ++D  +   +       +    ++    +     +   +     +    L 
Sbjct: 538 ITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLTTDMTYDLSAMQAWKDTLQ 597

Query: 640 NRLNFIAE---------------------------------KSEKSWHGSINNSD----- 661
            +L                                      + E +  G    S+     
Sbjct: 598 TQLEHFGSDLHPEIELVNIHAPTPKVIDAVTADLMGMKPQPEPELTIEGETETSNSDMLS 657

Query: 662 ------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---- 711
                   +      +   ++L+ S I S         S+           +  +     
Sbjct: 658 TKAQWLPRITVYVHQLAHNYLLDASFINSGEYARLLRLSSEWNTLLADSAFIRRDSTSAT 717

Query: 712 DKIKITGPCSLLD 724
            +I I     L  
Sbjct: 718 KEIPIRDFDFLWQ 730


>gi|160941457|ref|ZP_02088792.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435603|gb|EDP13370.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC
           BAA-613]
          Length = 637

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 288/584 (49%), Positives = 396/584 (67%), Gaps = 5/584 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I VT
Sbjct: 3   EQYGADQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGYCDSIDVT 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N D S TV D+GRGIP D+ K+ G+ A EV+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 62  INEDNSITVMDDGRGIPVDIQKKAGLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS WL++++ ++GNIY+  +  G +  PL + G       GT VTFLP  +IF    
Sbjct: 122 VNALSEWLEVQVYKDGNIYQQRYERGKVTYPLKIVGKCGPEQHGTRVTFLPDKEIFEETV 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YDTL+ RLRE +FL  +++I L D R  +  ++   Y+GGI+ FV+YL++ K P+   
Sbjct: 182 YDYDTLKIRLRETAFLTKNLKIILKDDRDEKKEKV-FHYEGGIKEFVTYLNKGKTPIYDQ 240

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G+R+ + ++++M+ ND Y EN+  F NNI   +GGTHL+G ++ALT+    Y  +
Sbjct: 241 VIYCEGTREGVYVEVSMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARE 300

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K  + ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R+ V++ V++ L+ 
Sbjct: 301 KKLLKDSEDNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARAAVDNIVSEQLTY 360

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LE++P  AK + +K + A   R AAR+ARDLTRRK  LD  +LPGKLADCS+++P+  E
Sbjct: 361 FLEQNPAVAKSMCEKSILAQRARAAARKARDLTRRKSALDGMALPGKLADCSDKNPENCE 420

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR D++  + EI  +ITA GTGI 
Sbjct: 421 IYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAMITAFGTGI- 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + +
Sbjct: 480 HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKVEK 539

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            K + Y   ++ L   L                 G +    L  
Sbjct: 540 NKKVWYAYSDDELNSILKEIGRDNSNKIQRYKGLGEMDAEQLWE 583



 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G  ++ DI   R  + +      ++G+ I +    +  R     I++ Y       L  
Sbjct: 477 TGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYK 536

Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        L++I    GR   + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 537 VEKNKKVWYAYSDDELNSILKEIGRDNSNKIQRYKGLGEMDAEQLWETTMDPERRILLRV 596

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + + +  + D  F+ LMGD+VEPRREFI+ N+     LDI
Sbjct: 597 TMDEETTSEVDLTFTTLMGDQVEPRREFIEANAKKVKNLDI 637


>gi|86141195|ref|ZP_01059741.1| DNA gyrase subunit B [Leeuwenhoekiella blandensis MED217]
 gi|85831754|gb|EAQ50209.1| DNA gyrase subunit B [Leeuwenhoekiella blandensis MED217]
          Length = 646

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 284/601 (47%), Positives = 397/601 (66%), Gaps = 11/601 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+      Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MSEEANKKQYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N + S +V DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDSIKVIINENNSISVKDNGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS+ LK  + R+G I+E  +  G    P+   G   +D GT VTFLP   
Sbjct: 120 HGVGVSCVNALSTHLKATVYRDGKIWEQEYEKGKAMYPVKGIGDT-DDRGTAVTFLPDPS 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
           IF     +NYDTL  R+REL++LN  ++ISL DKR      +    T   + G++ FV +
Sbjct: 179 IFQTTTEYNYDTLASRMRELAYLNKGIKISLTDKRQKDEKGDFVSETFHSEEGLKEFVRF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD +++P++   I ++G +++I +++AM +ND Y EN+  + NNI   +GGTHL+G R  
Sbjct: 239 LDGNRQPIIGEVISMEGEKNDIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLAGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTSSLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVTSA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ +  +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V+ I  LPGKLA
Sbjct: 359 VSQAVSEMVEIYLEEHPDDAKTIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE DP+  E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 419 DCSETDPEACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRY KI+IM DADVDG+HI TL+LTFFFR M  L+  
Sbjct: 479 NIFTALGVTIGTEEDSKALNLSKLRYKKIVIMCDADVDGSHIATLILTFFFRYMRELVEG 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI  PPLY + +GK ++Y   E+  ++Y      S  ++ +     + ++      +
Sbjct: 539 GHVYIATPPLYLLKKGKKMRYAWSEKERDEYNAQMGGSVSVQRYKGLGEMNAEQLWDTTM 598

Query: 592 D 592
           +
Sbjct: 599 N 599



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 59/70 (84%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +S+QRYKGLGEMNA QLW+TT+NP+ R+L +V I + ++AD +FS LMGDEV PRREFI+
Sbjct: 577 VSVQRYKGLGEMNAEQLWDTTMNPEFRTLRQVTIDNGTEADRIFSMLMGDEVPPRREFIE 636

Query: 794 ENSLPSALDI 803
           +N++ + +D+
Sbjct: 637 KNAVYANIDV 646


>gi|150010130|ref|YP_001304873.1| DNA gyrase subunit B [Parabacteroides distasonis ATCC 8503]
 gi|149938554|gb|ABR45251.1| DNA gyrase, B subunit [Parabacteroides distasonis ATCC 8503]
          Length = 651

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 292/602 (48%), Positives = 400/602 (66%), Gaps = 15/602 (2%)

Query: 1   MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+ I+N+   Y ADSIQ+L+GL+AV+KRPSMYIGDT  E GLHH++YEV+DN+IDE+L 
Sbjct: 1   MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I V +N D S TV+D+GRGIP D+H++EG SA EV++T LHAGGKF++ +YKVSG
Sbjct: 60  GYCTYIDVVINEDNSITVTDDGRGIPVDIHEKEGKSALEVVLTVLHAGGKFDKGTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS++LK  ++R G ++   F  G   + + V     + TGT ++F P 
Sbjct: 120 GLHGVGVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVI-DNTDKTGTTISFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
             IF+V ++ YD L  RLREL+FLN+ + + L DKR  +     +        G++ FV 
Sbjct: 179 GSIFTVTEYKYDILATRLRELAFLNAGITLRLTDKRVLKEDGSFKSEVFHSDEGLKEFVR 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y+DR K+ L+   I I   +  I +++A+ +N  Y+E+V  + N+I   +GGTHL+G R 
Sbjct: 239 YIDRSKEKLIPDVIHIVTEKQGIPVEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR +  Y E S   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL +SEV  
Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  + + L  +LEEHP EAKIIV KV+ A+  R AAR+AR+L +RK  L    LPGKL
Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +D    ELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  S+EI
Sbjct: 419 ADCSSKDASICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478

Query: 475 GTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +  A+G  +G +      ++ KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M SLI 
Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587
           NG++Y+  PPLY   +GK  +Y   E+  + +++      E  +        G ++ + L
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598

Query: 588 RN 589
            +
Sbjct: 599 WD 600



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   +F  E  Q I  ++   +    +  A   EK  +  +    I+
Sbjct: 455 LPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKV----II 510

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGD-KIKITG 718
           +            L  +  F       R   + IE  Y+      L L   G  +     
Sbjct: 511 MTDADVDGSHIATLILTFFF-------RRMRSLIENGYVYLATPPLYLCKKGKVEEYCWT 563

Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                  I   G      I  QRYKGLGEMN  QLW+TT+NP+ R+L ++ I +A++AD 
Sbjct: 564 EQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIDNAAEADQ 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802
           +F+ LMG++V PRREFI+EN+  + +D
Sbjct: 624 IFAMLMGEDVGPRREFIEENATYANID 650


>gi|256838953|ref|ZP_05544463.1| DNA gyrase, B subunit [Parabacteroides sp. D13]
 gi|262382583|ref|ZP_06075720.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_33B]
 gi|256739872|gb|EEU53196.1| DNA gyrase, B subunit [Parabacteroides sp. D13]
 gi|262295461|gb|EEY83392.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_33B]
          Length = 651

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 292/602 (48%), Positives = 400/602 (66%), Gaps = 15/602 (2%)

Query: 1   MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+ I+N+   Y ADSIQ+L+GL+AV+KRPSMYIGDT  E GLHH++YEV+DN+IDE+L 
Sbjct: 1   MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I V +N D S TV+D+GRGIP D+H++EG SA EV++T LHAGGKF++ +YKVSG
Sbjct: 60  GYCTYIDVVINEDNSITVTDDGRGIPVDIHEKEGKSALEVVLTVLHAGGKFDKGTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS++LK  ++R G ++   F  G   + + V     + TGT ++F P 
Sbjct: 120 GLHGVGVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVI-DNTDKTGTTISFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
             IF+V ++ YD L  RLREL+FLN+ + + L DKR  +     +        G++ FV 
Sbjct: 179 GSIFTVTEYKYDILATRLRELAFLNAGITLRLTDKRVLKEDGSFKSEVFHSDEGLKEFVR 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y+DR K+ L+   I I   +  I +++A+ +N  Y+E+V  + N+I   +GGTHL+G R 
Sbjct: 239 YIDRSKEKLIPDVIHIVTEKQGIPVEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR +  Y E S   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL +SEV  
Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  + + L  +LEEHP EAKIIV KV+ A+  R AAR+AR+L +RK  L    LPGKL
Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +D    ELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  S+EI
Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478

Query: 475 GTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +  A+G  +G +      ++ KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M SLI 
Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587
           NG++Y+  PPLY   +GK  +Y   E+  + +++      E  +        G ++ + L
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598

Query: 588 RN 589
            +
Sbjct: 599 WD 600



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   +F  E  Q I  ++   +    +  A   EK  +  +    I+
Sbjct: 455 LPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKV----II 510

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGD-KIKITG 718
           +            L  +  F       R   + IE  Y+      L L   G  +     
Sbjct: 511 MTDADVDGSHIATLILTFFF-------RRMRSLIENGYVYLATPPLYLCKKGKVEEYCWT 563

Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                  I   G      I  QRYKGLGEMN  QLW+TT+NP+ R+L ++ I +A++AD 
Sbjct: 564 EQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIDNAAEADQ 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802
           +F+ LMG++V PRREFI+EN+  + +D
Sbjct: 624 IFAMLMGEDVGPRREFIEENATYANID 650


>gi|301308180|ref|ZP_07214134.1| DNA gyrase, B subunit [Bacteroides sp. 20_3]
 gi|300833650|gb|EFK64266.1| DNA gyrase, B subunit [Bacteroides sp. 20_3]
          Length = 651

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 292/602 (48%), Positives = 400/602 (66%), Gaps = 15/602 (2%)

Query: 1   MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+ I+N+   Y ADSIQ+L+GL+AV+KRPSMYIGDT  E GLHH++YEV+DN+IDE+L 
Sbjct: 1   MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I V +N D S TV+D+GRGIP D+H++EG SA EV++T LHAGGKF++ +YKVSG
Sbjct: 60  GYCTYIDVVINEDNSITVTDDGRGIPVDIHEKEGKSALEVVLTVLHAGGKFDKGTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS++LK  ++R G ++   F  G   + + V     + TGT ++F P 
Sbjct: 120 GLHGVGVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVI-DNTDKTGTTISFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
             IF+V ++ YD L  RLREL+FLN+ + + L DKR  +     +        G++ FV 
Sbjct: 179 GSIFTVTEYKYDILATRLRELAFLNAGITLRLTDKRVLKEDGSFKSEIFHSDEGLKEFVR 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y+DR K+ L+   I I   +  I +++A+ +N  Y+E+V  + N+I   +GGTHL+G R 
Sbjct: 239 YIDRSKEKLIPDVIHIVTEKQGIPVEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR +  Y E S   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL +SEV  
Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  + + L  +LEEHP EAKIIV KV+ A+  R AAR+AR+L +RK  L    LPGKL
Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +D    ELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  S+EI
Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478

Query: 475 GTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +  A+G  +G +      ++ KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M SLI 
Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587
           NG++Y+  PPLY   +GK  +Y   E+  + +++      E  +        G ++ + L
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598

Query: 588 RN 589
            +
Sbjct: 599 WD 600



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   +F  E  Q I  ++   +    +  A   EK  +  +    I+
Sbjct: 455 LPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKV----II 510

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGD-KIKITG 718
           +            L  +  F       R   + IE  Y+      L L   G  +     
Sbjct: 511 MTDADVDGSHIATLILTFFF-------RRMRSLIENGYVYLATPPLYLCKKGKVEEYCWT 563

Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                  I   G      I  QRYKGLGEMN  QLW+TT+NP+ R+L ++ I +A++AD 
Sbjct: 564 EQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIDNAAEADQ 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802
           +F+ LMG++V PRREFI+EN+  + +D
Sbjct: 624 IFAMLMGEDVGPRREFIEENATYANID 650


>gi|294102629|ref|YP_003554487.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261]
 gi|293617609|gb|ADE57763.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261]
          Length = 634

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 298/645 (46%), Positives = 407/645 (63%), Gaps = 14/645 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y A  IQ+L+GL AV+KRP MYIGDT G  GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MT--TSAKQYTAKDIQVLEGLQAVRKRPGMYIGDT-GPRGLHHLVYEVVDNSIDEAIAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V +  D S +V+DNGRGIPT+ H   G  A+EV++T LHAGGKF+ ++YKVSGGL
Sbjct: 58  CDKISVVIYEDESVSVADNGRGIPTEPHPSSGRPASEVVLTILHAGGKFDNQAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL++ I+R G      F  G+    L   G     TGT V F P + 
Sbjct: 118 HGVGVSVVNALSEWLEITIQRNGLSRTQRFERGVPVTDLSE-GEPSTKTGTYVRFHPDTT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+ D L  RLRE++FLN  + I+L D RS +   +   Y+GGI+ F+ YL++ K
Sbjct: 177 IFEEVRFSADILSGRLREMAFLNPGLAITLEDHRSGK--CVEFHYEGGIKTFIEYLNKGK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL   PI I G +D  S+++ +++NDGY E +  F N I   +GGTH++G R+ALTR +
Sbjct: 235 TPLFPEPIVIAGEKDGASVEIGIQYNDGYLERIFAFANMIHTIEGGTHVAGFRTALTRAV 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
                ++   ++   ++ G+D +EG T VLSIK+ +P+F  QTK KL +SE++ + +S V
Sbjct: 295 NEVARRAKILREKDENLSGEDLKEGLTCVLSIKLSNPQFEGQTKTKLGNSEIKGITDSVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +GL A+L+EH    K +V+K + A   RDAA++AR+L  RK  +   +LPGKLADCS R
Sbjct: 355 YEGLLAYLDEHQEVLKPVVEKAIRARQARDAAKKARELV-RKTAMTGMNLPGKLADCSSR 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+ARFDK+LS+ EI T+I A
Sbjct: 414 DPHVCEVYIVEGDSAGGSAKQGRDRGFQAILPLRGKILNVEKARFDKVLSNNEIRTIIQA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D FD +KLRY+KIIIMTDADVDGAHI TLLLTFF+R M  LI  G LY+ +PP
Sbjct: 474 LGCGIGED-FDHSKLRYNKIIIMTDADVDGAHISTLLLTFFYRYMQDLIDKGHLYLAQPP 532

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY + RGK++ Y   E+ L D + +   S           G ++ + L         +D 
Sbjct: 533 LYRVQRGKNVTYCYSEKELRDIVDSTPDSRRASVQRYKGLGEMNPDQLWET-----TMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +       +  +       +   +  +     +A+      N 
Sbjct: 588 QNRVLKRIEVEDAMLADEYFSILMGDKVEPRRDFIAAHAHEVRNL 632



 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V   +++   +  +     + +  S    + ++      V    +    
Sbjct: 450 ILNVEKARFDKVLSNNEIRTIIQALGCGIGEDFDHSKLRYNKIIIMTDADVDGAHISTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQR 738
             F +      I    +      +  +    +         L D + S    R+  S+QR
Sbjct: 510 LTFFYRYMQDLIDKGHLYLAQPPLYRVQRGKNVTYCYSEKELRDIVDSTPDSRR-ASVQR 568

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++P  R L R+++ DA  AD+ FS LMGD+VEPRR+FI  ++  
Sbjct: 569 YKGLGEMNPDQLWETTMDPQNRVLKRIEVEDAMLADEYFSILMGDKVEPRRDFIAAHAHE 628

Query: 799 S-ALDI 803
              LDI
Sbjct: 629 VRNLDI 634


>gi|329954160|ref|ZP_08295255.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056]
 gi|328528137|gb|EGF55117.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056]
          Length = 653

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/604 (46%), Positives = 387/604 (64%), Gaps = 17/604 (2%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++  +    S+Y A +IQ+L+GL+AV+KRP+MYIGD     GLHH++YEV+DN+IDE+L
Sbjct: 1   MTEEEKINGESNYSASNIQVLEGLEAVRKRPAMYIGDIS-IKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +  ++ R G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVG-TTDITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFV 233
              IF+   +NYD L  R+REL++LN+ ++I+L D    +     ++   +   G++ FV
Sbjct: 179 DDTIFTETVYNYDILATRMRELAYLNAGIKITLTDLRVKEEDGSYKQEIFYSVEGLKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y+D  ++ L+   I I   +    +++A+ +N  Y+EN+  + NNI   +GGTHL+G R
Sbjct: 239 RYIDSSREHLVNDVIYINTEKQGTPVEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E +   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + LS +LEEHP E+K+IV KV+ A+  R AAR+AR+  +RK  +    +PGK
Sbjct: 359 GAVDQAVGEALSYYLEEHPKESKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS +DP++ ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           +  +I ALG   G         +I+KLRY K+IIMTDADVDG+HI TL++T FFR  P +
Sbjct: 479 VNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQV 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585
           I  G+LYI  PPLY  T+GK  +Y   ++  + ++       E  +        G ++  
Sbjct: 539 IQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPE 598

Query: 586 DLRN 589
            L  
Sbjct: 599 QLWE 602



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 52/66 (78%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT+NP+ R L +V + +A++AD  FS LMG++V PRR+FI++N+
Sbjct: 587 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENAAEADYTFSMLMGEDVGPRRDFIEKNA 646

Query: 797 LPSALD 802
             + +D
Sbjct: 647 TYANID 652


>gi|193211690|ref|YP_001997643.1| DNA gyrase subunit B [Chlorobaculum parvum NCIB 8327]
 gi|193085167|gb|ACF10443.1| DNA gyrase, B subunit [Chlorobaculum parvum NCIB 8327]
          Length = 647

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 284/593 (47%), Positives = 402/593 (67%), Gaps = 10/593 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +     + Y A +IQ+L G++ V+KRP+MYIGD     GLHH++YE++DN+IDE+L G+ 
Sbjct: 8   TAQNAANDYGATNIQVLDGIEHVRKRPAMYIGDIHS-RGLHHLVYEIVDNSIDETLAGFN 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V +N DGS TV+D GRGIP D+H  +  SA E++MT + AGGKF++ +YKVSGGLH
Sbjct: 67  DYIHVAMNPDGSVTVTDRGRGIPVDIHPVKKKSALELVMTVIGAGGKFDKGAYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS W +  + R+G I+  ++  G+    +   G   +  GT+VTF P  DI
Sbjct: 127 GVGASVVNALSEWCEAEVYRDGKIFRQTYKRGVPQGGVEEVG-TTDQKGTKVTFKPDPDI 185

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F + +F  D +  R+REL+FLNS+++I +   +  E  E T  ++GG+  FV + D ++ 
Sbjct: 186 FKITEFRKDIIIDRMRELAFLNSNLRIIV---QDAEGFEETFHFEGGLREFVRFTDANRL 242

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L++ PI + G R++  +++A+++ND Y ENV  + NNI   +GGTH++G R ALTR + 
Sbjct: 243 SLLKEPIFLSGERESTMVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLN 302

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y +K+   K  K ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE +S+VE+ VN
Sbjct: 303 AYAQKNDLLKNVKITLTGDDFKEGLTAVISVKVPEPQFEGQTKTKLGNSETQSIVETIVN 362

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ + E +P   K+I++KV  A++ R+AAR+A++LTRRK VL+ + LPGKLADCS  D
Sbjct: 363 EQLAEFAESNPGTLKLIIEKVKGAAISREAARKAKELTRRKSVLESSGLPGKLADCSIND 422

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P   EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  KML ++EI T+I AL
Sbjct: 423 PDHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILAL 482

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG++ F   KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI  G ++I +PPL
Sbjct: 483 GTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIAQPPL 542

Query: 542 YGITRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589
           Y +  G+  QY  DEE           + +  +          G ++   L +
Sbjct: 543 YLVKAGREQQYAWDEEERASITEQMKKLQKGKANVSIQRYKGLGEMNPEQLWS 595



 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 10/171 (5%)

Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
            L       E+ +         ++      V    +      F F      I + ++   
Sbjct: 479 ILALGTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVF-I 537

Query: 701 YLTILSLICNGDKIKIT-------GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
               L L+  G + +              +  +   G+  +S+QRYKGLGEMN  QLW T
Sbjct: 538 AQPPLYLVKAGREQQYAWDEEERASITEQMKKLQK-GKANVSIQRYKGLGEMNPEQLWST 596

Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           T++P+ RSLL+V + +A +AD +FS LMGD+VEPRR FI++N+     LD+
Sbjct: 597 TMDPEHRSLLQVTVENAMEADQVFSTLMGDKVEPRRNFIEQNAKYVRRLDV 647


>gi|22298189|ref|NP_681436.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1]
 gi|22294368|dbj|BAC08198.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1]
          Length = 640

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 278/634 (43%), Positives = 390/634 (61%), Gaps = 9/634 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +  +++LKGL+ V+ RP MYIG T G  GLHH++YEV+DN++DE+L GY   I V
Sbjct: 2   TAEYSSAQLRVLKGLEPVRTRPGMYIGST-GPKGLHHLVYEVVDNSVDEALAGYCSTILV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV+D+GRGIPTD+H + G+S  E +MT LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  QINADGSVTVTDDGRGIPTDIHPDTGVSGVETVMTVLHAGGKFGDGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS WL++ + R G ++   +  G+   PL  T       GT VTF P   IF+   
Sbjct: 121 VVNALSEWLEVTVWRNGFVHHQRYERGVPTTPLEKTPDTEERRGTSVTFFPDRQIFTETI 180

Query: 187 FNY-DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
                 L  RLREL++LN+ ++I   D R   P   T  Y+GGI  +V Y+ + K+PL  
Sbjct: 181 EFDAKVLMTRLRELAYLNAGIRIEFKDLRVTPPLSETYCYEGGIREYVRYMVQEKEPLHP 240

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             I IQG +D++ ++ A++W  D Y EN+L F NNI   DGGTH+ GL++ LTR + +  
Sbjct: 241 EIIYIQGEKDDVQVEAALQWCADAYSENLLGFANNIRTIDGGTHMEGLKAVLTRTLNALG 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K++  ++ G++ REG T+++S+K+P+P F  QTK KL ++EVR +V++ V   L
Sbjct: 301 RKRNKLKENNANLAGENIREGLTAIISVKVPNPEFEGQTKTKLGNTEVRGIVDAIVGAAL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L+ HP     I++K + A    +AARRAR++ RRK VL+ ++LPGKLADCS RDP  
Sbjct: 361 TEYLDFHPNVTDTILEKAIQAFNAAEAARRAREMVRRKSVLESSTLPGKLADCSSRDPAV 420

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + E+ +LITALG G
Sbjct: 421 SEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSLITALGLG 480

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           +  + FD  KLRYHKII+MTDADVDG+HIRTLLLTFF+R    L++ GF+YI  PPLY +
Sbjct: 481 VKGEEFDPAKLRYHKIILMTDADVDGSHIRTLLLTFFYRYQQELVNQGFVYIACPPLYKV 540

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            RG+   Y   +  L+  + +   +           G +    L         ++   + 
Sbjct: 541 ERGRQHFYCYSDRELQQQIASFPENANYTIQRFKGLGEMMPEQLWET-----TMNPETRI 595

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                 +   E   I  +   +        + + 
Sbjct: 596 LKRVEIEDAAEADRIFTILMGDRVAPRREFIETY 629



 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 8/130 (6%)

Query: 681 SIFSFGSKYKRIFSNR-IEENYLTILSLICNGDK-IKITGPCSLLDTIFSIGRK-GISMQ 737
            + +F  +Y++   N+         L  +  G +         L   I S       ++Q
Sbjct: 512 LLLTFFYRYQQELVNQGFVYIACPPLYKVERGRQHFYCYSDRELQQQIASFPENANYTIQ 571

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-- 795
           R+KGLGEM   QLWETT+NP+TR L RV+I DA++AD +F+ LMGD V PRREFI+    
Sbjct: 572 RFKGLGEMMPEQLWETTMNPETRILKRVEIEDAAEADRIFTILMGDRVAPRREFIETYGP 631

Query: 796 --SLPSALDI 803
             +L   LDI
Sbjct: 632 QLALE-NLDI 640


>gi|309389293|gb|ADO77173.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228]
          Length = 638

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 290/622 (46%), Positives = 404/622 (64%), Gaps = 8/622 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M    +N  Y+A+ IQ+LKGL+AV+KRP MYIG T G  GLHH+++EV+DN+IDE L G 
Sbjct: 1   METLFENKDYNANQIQVLKGLEAVRKRPGMYIGST-GIKGLHHLVWEVVDNSIDEFLAGN 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++     TV D GRGIP D H+E G+ A +V++T LHAGGKFN  SYKVSGGL
Sbjct: 60  GDQIKVTIHQGEEITVEDFGRGIPADTHQETGLPAVQVVLTTLHAGGKFNNSSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L++    EG+ Y+  +  G   + L   G     +GT + F P S+
Sbjct: 120 HGVGVSVVNALSSELEITTHWEGHKYQQHYKKGAPVDKLKKIGKTE-RSGTIIRFKPDSE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+ ++F ++ L HRL+E ++LN  + +SL D+R  E  E    Y GGI+AFV +L++ +
Sbjct: 179 IFTAREFKFENLAHRLQESAYLNKELTLSLRDERGEEVVEKEFQYDGGIKAFVEFLNKDR 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +    I  +   D+  +++A+++NDGY+E +  + NNI   DGG HL+G ++ALTR +
Sbjct: 239 NIINNDIIYFESKPDDYEVEIAVQYNDGYNERIFSYANNINTIDGGYHLTGFKTALTRAV 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            ++ + +        S+ G D REG T+V+++K+P+P+F  QTK KL +SE+RS+VES V
Sbjct: 299 NNFAKNNNKLPAKISSLNGKDVREGITAVINVKLPEPQFEGQTKTKLGNSEIRSIVESEV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              LS + + +P  AK I+ K + A   R A+++AR+LT+RK  L   SLPGKLADCS +
Sbjct: 359 YQYLSLYFDTNPDLAKKIIDKAVQAVRARKASKKARELTKRKTALSSNSLPGKLADCSSK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
             ++SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERAR DK+L++ E+  +ITA
Sbjct: 419 KSEESELFIVEGDSAGGSAKQGRERKFQAILPLKGKILNVERARLDKILNNNEVAAIITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG+D F++ KLRYHKI+IMTDADVDGAHI TL+LT F+R MP LI NG +Y+ KPP
Sbjct: 479 LGAGIGED-FNLEKLRYHKIVIMTDADVDGAHIATLILTLFYRYMPELIENGHIYLAKPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY +T+ K   Y+  +++LE +      S          G ++   L      A  +D  
Sbjct: 538 LYKVTKRKKSHYLYSDQALETFRKENENSSFSLQRYKGLGEMNPEQLW-----ATTMDPQ 592

Query: 601 IKDFYPNHDKTFIEQAVISGVF 622
            +          IE   I    
Sbjct: 593 NRVLQKVEIDDKIEADDIFTRL 614



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 94/263 (35%), Gaps = 14/263 (5%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
             ++       +      + L  +      +   +S+  I + D         +  K   
Sbjct: 388 KASKKARELTKRKTALSSNSLPGKLADCSSKKSEESELFIVEGDSAGGSAKQGRERKFQA 447

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                     +E+A +  + N      I  +L + +    N    +  K           
Sbjct: 448 ILPLKGKILNVERARLDKILNNNEVAAIITALGAGIGEDFNLEKLRYHK----------- 496

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           +V      V    +        +    + I +  I      +  +        +      
Sbjct: 497 IVIMTDADVDGAHIATLILTLFYRYMPELIENGHIYLAKPPLYKVTKRKKSHYLYS-DQA 555

Query: 723 LDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L+T          S+QRYKGLGEMN  QLW TT++P  R L +V+I D  +ADD+F+RLM
Sbjct: 556 LETFRKENENSSFSLQRYKGLGEMNPEQLWATTMDPQNRVLQKVEIDDKIEADDIFTRLM 615

Query: 782 GDEVEPRREFIQENS-LPSALDI 803
           G     R+EFI  N+ L   +D+
Sbjct: 616 GSNASLRKEFIFNNAELAQTIDV 638


>gi|257452986|ref|ZP_05618285.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R]
 gi|257466634|ref|ZP_05630945.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917788|ref|ZP_07914028.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059526|ref|ZP_07924011.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R]
 gi|313685202|gb|EFS22037.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R]
 gi|313691663|gb|EFS28498.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563]
          Length = 638

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 271/586 (46%), Positives = 393/586 (67%), Gaps = 5/586 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A +I +L+GL+AV+KRP MYIG T    GLHH+++EV+DN++DE+L GY + ITV+
Sbjct: 2   NNYGAQNITVLEGLEAVRKRPGMYIGTTSA-RGLHHLVWEVVDNSVDEALAGYCNTITVS 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  D    V DNGRGIP D+H + G SA E+++T LHAGGKF   +YKVSGGLHGVG+SV
Sbjct: 61  ILPDNIIQVEDNGRGIPVDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGISV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS W ++++KR+GN+Y   ++ G     + +     AG+ TGT VTF P ++IF   
Sbjct: 121 VNALSEWTEIKVKRDGNVYYQKYLRGKPIEDVKIISSLEAGDTTGTTVTFKPDAEIFETV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y+ LQHRL+EL++LN  ++I+L+D R+   ++    ++GGI  F+  +    + L+ 
Sbjct: 181 IFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKEKFQFEGGISDFLKEVTHENQVLLS 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I ++G  + + +D+A  +     E +  F NNI   +GGTH++G R+ LT+ I    +
Sbjct: 241 KQIHVEGQAEQVGVDIAFTYTTSQSETIYSFVNNINTTEGGTHVTGFRTCLTKVINDIGK 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                K+    + G D REG  +++S+K+P P+F  QTK KL +SEV  +V S ++  L 
Sbjct: 301 SQGFLKEKDGKLQGGDIREGIVAIISVKVPQPQFEGQTKTKLGNSEVSGIVNSVLSVDLK 360

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P + K+I++K+L++   R+AA+RAR+   RK VL++ SLPGKLADCS +  ++ 
Sbjct: 361 IFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLADCSSKKSEEC 420

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K L S+EI  ++TA GT I
Sbjct: 421 EIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKALESEEIRAMVTAFGTNI 480

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++SFD+NKLRY KII+MTDADVDGAHIRTL+LTF +R M  LIHNG +YI +PPLY I+
Sbjct: 481 GEESFDLNKLRYGKIILMTDADVDGAHIRTLILTFLYRYMVDLIHNGNVYIAQPPLYKIS 540

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
            GKS++Y   +  L++ L +     +          G ++   L  
Sbjct: 541 FGKSIRYAYTDAQLKEILQSVEGENKKYTLQRYKGLGEMNPEQLWE 586



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 105/268 (39%), Gaps = 12/268 (4%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +             +      +             +   F+ +        K
Sbjct: 376 KILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLADCSSKKSEECEIFLVEGDSAGGSAK 435

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQ-EINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
                + +  +   +   + N E       +      A    F     E+S+  +     
Sbjct: 436 QGRDRYFQAIL--PLKGKILNVEKAGLHKALESEEIRAMVTAFGTNIGEESFDLNKLRYG 493

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKITG-- 718
            ++      V    +   + I +F  +Y   +  N         L  I  G  I+     
Sbjct: 494 KIILMTDADVDGAHI--RTLILTFLYRYMVDLIHNGNVYIAQPPLYKISFGKSIRYAYTD 551

Query: 719 --PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                +L ++    +K  ++QRYKGLGEMN  QLWETT++P+ R LL+V I +A +AD L
Sbjct: 552 AQLKEILQSVEGENKK-YTLQRYKGLGEMNPEQLWETTMDPEARLLLKVSIDNAREADML 610

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F +LMGD+VEPRREFIQE++  +  +DI
Sbjct: 611 FDKLMGDKVEPRREFIQEHAEYAKNIDI 638


>gi|313884315|ref|ZP_07818078.1| DNA gyrase, B subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620468|gb|EFR31894.1| DNA gyrase, B subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 639

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 293/590 (49%), Positives = 403/590 (68%), Gaps = 4/590 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ I+N+ Y+AD IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSEPIKNNGYNADQIQVLEGLEAVRKRPGMYIG-TTSIDGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +  D S TV DNGRGIP D+  + G  AAE + T LHAGGKF   SYKVSGGL
Sbjct: 60  CDHIEVFIEADNSITVIDNGRGIPVDIQSKTGRPAAETVYTVLHAGGKFGNDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG +VVNALS+ L L I REG I+ + F  G++   L V G      GT+V F+P   
Sbjct: 120 HGVGAAVVNALSTHLTLEIFREGKIHHLEFERGLVTKELEVIGETELV-GTKVNFVPDGT 178

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+   DF Y+ L+ R++EL+FLN  ++ISL DKR       + FY+GG+++F+ +L+  
Sbjct: 179 IFTDTTDFKYERLKDRIQELAFLNRGLRISLEDKREERQASDSFFYEGGLKSFIEHLNHA 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KKPL + PI ++G  D+I++++A+++ D Y  N+L F NNI   +GG H SG ++ALTR 
Sbjct: 239 KKPLHEEPIFLEGEMDDIAVEIALQYTDSYSTNLLSFANNIHTHEGGMHESGFKTALTRI 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y   +   K    ++ G+D REG T+++S+K PDP+F  QTK KL +SEVR++V+  
Sbjct: 299 INDYARNNNLLKDSDDNLSGEDTREGLTAIISVKHPDPQFEGQTKTKLGNSEVRTIVDRL 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
                + +L E+P  AKIIV+K + A+  R AA+RAR++TR+K  L+IA+LPGKLADCS 
Sbjct: 359 FTAEFNTFLLENPRVAKIIVEKGILAARARSAAKRAREMTRKKSGLEIANLPGKLADCSS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ +K ELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+++EI ++ T
Sbjct: 419 KEAEKCELFIVEGDSAGGSAKQGRSRMYQAILPIRGKILNVEKATMDRILANEEIRSMFT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTG G + FD+N +RYHK+IIMTDADVDGAHIRTLLLT  FR M  LI  G++YI +P
Sbjct: 479 AMGTGFGSE-FDVNNVRYHKLIIMTDADVDGAHIRTLLLTLIFRYMRPLIEAGYVYIAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +  GK   Y+  +E L  +      +          G +    L  
Sbjct: 538 PLYQVKVGKKETYLDTDEELNKWRKANPDARYKLQRYKGLGEMDYEQLWE 587



 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++ +    +       +  +      L+      V    +    
Sbjct: 456 ILNVEKATMDRILANEEIRSMFTAMGTGFGSEFDVNNVRYHKLIIMTDADVDGAHIRTLL 515

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               F      I +  +      +  +     +  +     L     +       +QRYK
Sbjct: 516 LTLIFRYMRPLIEAGYVYIAQPPLYQVKVGKKETYLDTDEELNKWRKANPDARYKLQRYK 575

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEM+  QLWETT+NP+ R LLRVK+ DA  AD + S LMG++VEPRR FI++N++   
Sbjct: 576 GLGEMDYEQLWETTMNPENRRLLRVKVEDAEVADQVMSMLMGEDVEPRRAFIEDNAVYVQ 635

Query: 800 ALDI 803
            LD+
Sbjct: 636 NLDV 639


>gi|189462935|ref|ZP_03011720.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM 17136]
 gi|189430362|gb|EDU99346.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM 17136]
          Length = 654

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 282/605 (46%), Positives = 384/605 (63%), Gaps = 18/605 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+ +     ++Y A SIQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L
Sbjct: 1   MSEELIPSSGNNYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCTHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +   + R G I++  +  G     +   G   + TGT  TF P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTNVFRNGKIHQQEYACGKPLYAVKEVG-TTDITGTRQTFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFV 233
              IF+  ++ Y+ LQ R+REL++LN  + I+L DKR  E     ++     + G++ FV
Sbjct: 179 DGSIFTTTEYKYNILQARMRELAYLNKGITITLTDKREKEEDGSFKQEIFHSEEGVKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+    PL+   I +   +  I I+ A+ +N G+ EN+  + NNI   +GGTH +G R
Sbjct: 239 RFLNSTNTPLIDDVIYLNTEKQGIPIECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y E+S   +K K  + G+D REG  +V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 TALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVS 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V   V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR+  +RK  +    LPGK
Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKTIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R  ++ ELFLVEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSRTAEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +I ALG   G          +I+KLRYHK+IIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 VNNIIQALGVRFGVDGTEDSKKANIDKLRYHKVIIMTDADVDGSHIDTLIMTLFYRYMPE 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISK 584
           +I  G LYI  PPLY  ++GK  +Y   +E  + ++       E           G ++ 
Sbjct: 539 VIQGGHLYIANPPLYKCSKGKISEYCYTDEERQAFMQKYGDGTETGIHTQRYKGLGEMNP 598

Query: 585 NDLRN 589
             L  
Sbjct: 599 EQLWE 603



 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 56/70 (80%)

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           GI  QRYKGLGEMN  QLWETT+NP+TR L +V I +A++AD +FS LMGD+V PRREFI
Sbjct: 584 GIHTQRYKGLGEMNPEQLWETTMNPETRILKQVSIENAAEADYIFSMLMGDDVAPRREFI 643

Query: 793 QENSLPSALD 802
           ++++  + +D
Sbjct: 644 EKHATYANID 653


>gi|218131840|ref|ZP_03460644.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM 20697]
 gi|317474545|ref|ZP_07933819.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA]
 gi|217986143|gb|EEC52482.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM 20697]
 gi|316909226|gb|EFV30906.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA]
          Length = 653

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 278/604 (46%), Positives = 386/604 (63%), Gaps = 17/604 (2%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++  +    ++Y A +IQ+L+GL+AV+KRP+MYIGD     GLHH++YEV+DN+IDE+L
Sbjct: 1   MTEEEKINGENNYSASNIQVLEGLEAVRKRPAMYIGDIS-IKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +  ++ R G IY+  +  G     +   G     TGT   F P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVGVTEI-TGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFV 233
              IF+   +NYD L  R+REL++LN+ ++I+L D    +     ++   +   G++ FV
Sbjct: 179 DDTIFTETVYNYDILATRMRELAYLNAGIKITLTDLRVKEEDGNYKQEIFYSVEGLKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y+D  ++ L+   I I   +    +++A+ +N  Y+EN+  + NNI   +GGTHL+G R
Sbjct: 239 RYIDSSREHLVNDVIYINTEKQGTPVEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E +   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + LS +LEEHP E+K+IV KV+ A+  R AAR+AR+  +RK  +    +PGK
Sbjct: 359 GAVDQAVGEALSYYLEEHPKESKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS +DP++ ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           +  +I ALG   G         +I+KLRY K+IIMTDADVDG+HI TL++T FFR  P +
Sbjct: 479 VNNIIQALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQV 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585
           I  G+LYI  PPLY  T+GK  +Y   ++  + ++       E  +        G ++  
Sbjct: 539 IQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAIHTQRYKGLGEMNPE 598

Query: 586 DLRN 589
            L  
Sbjct: 599 QLWE 602



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 52/66 (78%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT+NP+ R L +V + +A++AD  FS LMG++V PRR+FI++N+
Sbjct: 587 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENAAEADYTFSMLMGEDVGPRRDFIEKNA 646

Query: 797 LPSALD 802
             + +D
Sbjct: 647 TYANID 652


>gi|257457903|ref|ZP_05623062.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580]
 gi|257444616|gb|EEV19700.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580]
          Length = 638

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 290/637 (45%), Positives = 416/637 (65%), Gaps = 13/637 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   SY A++I +LKGLDAV+KRP MYIG T G  GLHH++YEV+DN IDE++ GY D I
Sbjct: 1   MTTPSYSAENITVLKGLDAVRKRPGMYIGST-GPDGLHHLVYEVVDNCIDEAMAGYCDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  + +  V DNGRGIP D+H EEG+SA E+++TRLHAGGKF++ SYKVSGGLHGVG
Sbjct: 60  LVVLEKNDTVRVEDNGRGIPVDIHPEEGVSALELVLTRLHAGGKFDKGSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALS+ ++  + R+G  Y   F  G    P+   G      GT + +     IF  
Sbjct: 120 VSVVNALSTSMEAIVCRDGFEYVQKFALGEPLGPVTKRGET-QKRGTTIRWTADPSIFTE 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +N+D L  RLREL+FLN++++I+L D+R   P+E+T  + GG+  FV YL+  K+ L
Sbjct: 179 TTTYNFDVLAVRLRELAFLNNTIKITLRDERLSTPKEVTFAFDGGLSHFVRYLNESKQVL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + PI  +G ++++ +++AM++NDGY EN+L F N+I  ++GGTHL G ++ALTR +  +
Sbjct: 239 PKEPIYFEGEKNDVVVEIAMQYNDGYKENILSFVNDINTREGGTHLEGFKTALTRVMNEF 298

Query: 304 VEKSFGSK---KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           ++K+       + +  ++G+D R G T+VLS+K+P+P+F  QTK KL +SEVRS+V++F+
Sbjct: 299 LKKNAKLSKKMEKEEKLMGEDVRAGLTAVLSVKVPEPQFEGQTKTKLGNSEVRSIVDTFI 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ + E++P+E   I++K +  +  R AAR+A++ TRRK  LD   LPGKLADCS +
Sbjct: 359 NEKLTLFFEQNPIEIDKILEKAVGEATARIAARKAKEATRRKSGLDSFGLPGKLADCSSK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP+K E+++VEGDSAGGSAK+GR  + QAILPL GK+LNVE+ R DK+L+++++  +I  
Sbjct: 419 DPEKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLNNEKLQPIIAT 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D F+++K+RYHKIIIM DADVDG+HIRTLLLTFFFR MP LI +GF+Y+  PP
Sbjct: 479 LGTGIGED-FNLDKIRYHKIIIMADADVDGSHIRTLLLTFFFRYMPELIEHGFVYLAMPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY I+  K   YV D+   +  L     S           G +    L         +D 
Sbjct: 538 LYKISYNKKEWYVYDDSERDSILNEIGRSVSPAVQRYKGLGEMDGTQLWET-----TMDP 592

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +          +E   I      E  +     +  
Sbjct: 593 ARRKMMRVTLSDAVEADRIFSTLMGEEVEPRRKFIEE 629



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 65/82 (79%), Gaps = 2/82 (2%)

Query: 724 DTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           D+I +   + +S  +QRYKGLGEM+ +QLWETT++P  R ++RV ++DA +AD +FS LM
Sbjct: 557 DSILNEIGRSVSPAVQRYKGLGEMDGTQLWETTMDPARRKMMRVTLSDAVEADRIFSTLM 616

Query: 782 GDEVEPRREFIQENSLPSALDI 803
           G+EVEPRR+FI+EN++ + LD+
Sbjct: 617 GEEVEPRRKFIEENAVYANLDV 638


>gi|83588881|ref|YP_428890.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073]
 gi|83571795|gb|ABC18347.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073]
          Length = 634

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 299/637 (46%), Positives = 418/637 (65%), Gaps = 10/637 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + YDA  IQIL+GL+AV++RP MYIG+T G  GLH +++E++DN+IDE+L G+ D I VT
Sbjct: 6   NEYDASQIQILEGLEAVRRRPGMYIGNT-GVRGLHQLVFELVDNSIDEALAGFCDRIEVT 64

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ +GS TV+DNGRGIP D+H++ G+ A EV +T LHAGGKF    YKV+GGLHGVG+SV
Sbjct: 65  IHENGSLTVADNGRGIPVDIHEKTGLPAVEVALTILHAGGKFGGNGYKVAGGLHGVGLSV 124

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL++++KR G IY   +  G   + L V G     TGT VTF P  +IF    F
Sbjct: 125 VNALSEWLEIKVKRNGKIYHQEYRRGQKVSELKVIGKTK-GTGTSVTFYPDGEIFEDLVF 183

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
             + +  RL+ELSFLN  V+I   D+R+      T ++ GG+  FV +L+++K  L   P
Sbjct: 184 QDEIIGRRLQELSFLNRGVKIVFRDERNESET--TYYHTGGLIDFVRHLNKNKTVLFNKP 241

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +   G +D++  ++A+++NDGY+E +L + NNI   +GG+H  G ++ALTR I  Y  + 
Sbjct: 242 LYFSGEKDDVQAEIAIQYNDGYNELILSYANNIHTVEGGSHEIGFKTALTRVINDYARRF 301

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K  + ++ G+D REG T+V+S+K+ +P+F  QTK KL ++EVR +V+S V + LSA+
Sbjct: 302 NLLKDAEANLSGEDIREGLTAVISVKVLEPQFEGQTKTKLGNTEVRGIVDSLVAENLSAY 361

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEE+P   + IV K L+A   R+AAR+AR+LTRRK  L+I SLPGKLADC+ +DP  +EL
Sbjct: 362 LEENPTIGRRIVDKALNAFRAREAARKARELTRRKNALEITSLPGKLADCTHKDPAMAEL 421

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L+++EI T+ITALGTGIG 
Sbjct: 422 FLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILNNEEIRTIITALGTGIG- 480

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D F+INK RYHK I+M DADVDG+HIRTLLLTFF+R M  LI  G++YI +PPLY + RG
Sbjct: 481 DDFNINKARYHKTILMADADVDGSHIRTLLLTFFYRYMRPLITEGYIYIAQPPLYKVYRG 540

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K  +Y+ ++  LE +L                G ++   L         ++   +     
Sbjct: 541 KVERYLYNDAELEKFLKEHEGERWEIQRYKGLGEMNPEQLWET-----TMNPESRTLLQV 595

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           + +  +E   I  +   +  +     +        N 
Sbjct: 596 NLEDAMEADAIFNILMGDRVEPRREFIQQHAHEVRNL 632



 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 14/202 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + N E  + I  +L + + +  N    +  K+   +  +    
Sbjct: 445 LPLRGKILNVEKARLDKILNNEEIRTIITALGTGIGDDFNINKARYHKTILMADAD---- 500

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
                  V    +      F +      I    I      +  +     +  +     L 
Sbjct: 501 -------VDGSHIRTLLLTFFYRYMRPLITEGYIYIAQPPLYKVYRGKVERYLYNDAELE 553

Query: 724 DTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
             +    G +   +QRYKGLGEMN  QLWETT+NP++R+LL+V + DA +AD +F+ LMG
Sbjct: 554 KFLKEHEGER-WEIQRYKGLGEMNPEQLWETTMNPESRTLLQVNLEDAMEADAIFNILMG 612

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D VEPRREFIQ+++     LDI
Sbjct: 613 DRVEPRREFIQQHAHEVRNLDI 634


>gi|86132658|ref|ZP_01051251.1| DNA gyrase subunit B [Dokdonia donghaensis MED134]
 gi|85816900|gb|EAQ38085.1| DNA gyrase subunit B [Dokdonia donghaensis MED134]
          Length = 647

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 283/598 (47%), Positives = 391/598 (65%), Gaps = 11/598 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD+     Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MSDDANKKQYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D S TV DNGRGIP  +HK+EG+SA +V+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDAIDVTINEDNSITVRDNGRGIPVGIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS+ LK  + +EG ++E  +  G    P+   G   + TGTEVTF P   
Sbjct: 120 HGVGVSCVNALSNHLKATVYKEGKVWEQEYERGKALYPVKAIGDT-DFTGTEVTFTPDDS 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
           IF     +NYDTL  RLREL++LN  + ++L DKR+     E    T     G+  FV +
Sbjct: 179 IFQQTTEYNYDTLASRLRELAYLNKGITVTLTDKRNKKEDGEFENETFHSNEGLSEFVRF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD ++ P++ + I ++G ++ + +++AM +ND Y EN+  + NNI   +GGTHL+G R  
Sbjct: 239 LDGNRNPIIGNVISMEGEKNGVPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLAGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  + + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTGSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVTSA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V + +  ++EE+P +AK IV+KV+ A+  R AA++AR++ +RK V+ I  LPGKL+
Sbjct: 359 VSQAVAEMIEIYMEENPNDAKTIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE DP   E+FLVEGDSAGG+AKQGR RE QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 419 DCSETDPAVCEVFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFENEEIK 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LTFFFR M  L+  
Sbjct: 479 NIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMRELVEK 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           GF+YI  PPLY + +G+  QY  D++  +                   G ++   L +
Sbjct: 539 GFVYIATPPLYLVKKGQKKQYAWDDKERDAIAERLGTQGVSIQRYKGLGEMNAEQLWD 596



 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/124 (42%), Positives = 77/124 (62%), Gaps = 2/124 (1%)

Query: 681 SIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQR 738
            I +F  +Y R    +         L L+  G K +        D I   +G +G+S+QR
Sbjct: 523 LILTFFFRYMRELVEKGFVYIATPPLYLVKKGQKKQYAWDDKERDAIAERLGTQGVSIQR 582

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMNA QLW+TT+NP+ R+L +V I + ++AD +FS LMGDEV PRREFI++N++ 
Sbjct: 583 YKGLGEMNAEQLWDTTMNPEFRTLRQVAIDNGTEADRIFSMLMGDEVPPRREFIEKNAIY 642

Query: 799 SALD 802
           + +D
Sbjct: 643 ANID 646


>gi|298374500|ref|ZP_06984458.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_19]
 gi|298268868|gb|EFI10523.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_19]
          Length = 651

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 292/602 (48%), Positives = 401/602 (66%), Gaps = 15/602 (2%)

Query: 1   MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+ I+N+   Y ADSIQ+L+GL+AV+KRPSMYIGDT  E GLHH++YEV+DN+IDE+L 
Sbjct: 1   MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I V +N D S TV+D+GRGIP D+H++EG SA EV++T LHAGGKF++ +YKVSG
Sbjct: 60  GYCTYIDVVINEDNSITVTDDGRGIPVDIHEKEGKSALEVVLTVLHAGGKFDKGTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS++LK  ++R G ++   F  G   + + V     + TGT ++F P+
Sbjct: 120 GLHGVGVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVI-DNTDKTGTTISFKPN 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
             IF+V ++ YD L  RLREL+FLN+ + + L DKR  +     +        G++ FV 
Sbjct: 179 GSIFTVTEYKYDILATRLRELAFLNAGITLRLTDKRVLKEDGSFKSEVFHSDEGLKEFVR 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y+DR K+ L+   I I   +  I +++A+ +N  Y+E+V  + N+I   +GGTHL+G R 
Sbjct: 239 YIDRSKEKLIPDVIHIVTEKQGIPVEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR +  Y E S   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL +SEV  
Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  + + L  +LEEHP EAKIIV KV+ A+  R AAR+AR+L +RK  L    LPGKL
Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +D    ELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  S+EI
Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478

Query: 475 GTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +  A+G  +G +      ++ KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M SLI 
Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587
           NG++Y+  PPLY   +GK  +Y   E+  + +++      E  +        G ++ + L
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598

Query: 588 RN 589
            +
Sbjct: 599 WD 600



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   +F  E  Q I  ++   +    +  A   EK  +  +    I+
Sbjct: 455 LPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKV----II 510

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGD-KIKITG 718
           +            L  +  F       R   + IE  Y+      L L   G  +     
Sbjct: 511 MTDADVDGSHIATLILTFFF-------RRMRSLIENGYVYLATPPLYLCKKGKVEEYCWT 563

Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                  I   G      I  QRYKGLGEMN  QLW+TT+NP+ R+L ++ I +A++AD 
Sbjct: 564 EQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIDNAAEADQ 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802
           +F+ LMG++V PRREFI+EN+  + +D
Sbjct: 624 IFAMLMGEDVGPRREFIEENATYANID 650


>gi|53711588|ref|YP_097580.1| DNA gyrase B subunit [Bacteroides fragilis YCH46]
 gi|60679839|ref|YP_209983.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343]
 gi|253564361|ref|ZP_04841818.1| subunit B [Bacteroides sp. 3_2_5]
 gi|265764971|ref|ZP_06093246.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16]
 gi|52214453|dbj|BAD47046.1| DNA gyrase B subunit [Bacteroides fragilis YCH46]
 gi|60491273|emb|CAH06021.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343]
 gi|251948137|gb|EES88419.1| subunit B [Bacteroides sp. 3_2_5]
 gi|263254355|gb|EEZ25789.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16]
 gi|301161359|emb|CBW20899.1| DNA gyrase subunit B [Bacteroides fragilis 638R]
          Length = 652

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 293/603 (48%), Positives = 398/603 (66%), Gaps = 16/603 (2%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R G IY+  +  G    P+   G A + TGT+  F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVGIADH-TGTKQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
              IF+   ++Y  L  RLREL++LN+ ++ISL D+R        +  T + + G+  FV
Sbjct: 179 DDSIFTETIYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKHETFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   + NI I++A+ +N G+ EN+  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNTEKQNIPIEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPGK
Sbjct: 359 GAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS++DP+K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S+E
Sbjct: 419 LADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESEE 478

Query: 474 IGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  + TALG  IG +      +I+KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I
Sbjct: 479 IRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586
            NG+LYI  PPLY   +GK  +Y   +   + ++       E  +        G ++   
Sbjct: 539 QNGYLYIATPPLYLCKKGKIEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598

Query: 587 LRN 589
           L  
Sbjct: 599 LWE 601



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 13/204 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+       E  + I  +L   +    +  A   +K  +  I      
Sbjct: 456 LPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANIDKLRYHKI------ 509

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL- 722
           +      V    +      F F    + I +  +       L L   G KI+        
Sbjct: 510 IIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY-IATPPLYLCKKG-KIEEYCWTDAQ 567

Query: 723 ----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               +DT        I  QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS
Sbjct: 568 RQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFS 627

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
            LMG++V PRREFI+EN+  + +D
Sbjct: 628 MLMGEDVGPRREFIEENATYANID 651


>gi|227873174|ref|ZP_03991465.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841005|gb|EEJ51344.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 654

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 280/584 (47%), Positives = 399/584 (68%), Gaps = 3/584 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L G+ + ITV
Sbjct: 19  SKEYGADQIQILEGLEAVRKRPGMYIGSTS-VRGLHHLVYEIVDNSVDEALAGFCNTITV 77

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++ + S TV DNGRGIP D+ K+ G SA EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 78  KIHQNNSITVRDNGRGIPVDIQKKAGKSALEVVFTVLHAGGKFGGAGYKVSGGLHGVGAS 137

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQ 185
           VVNALS WL +++ +EG IY MSF  G +  P+   G+   +  GTEV FLP + IF   
Sbjct: 138 VVNALSEWLDVKVYKEGKIYTMSFAKGKVTKPIECIGTCSEEEQGTEVHFLPDASIFEES 197

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            ++++TL+ RLRE +FL  +++I L+D+R  + +E    Y+GGI+ FV++L++ K+ L  
Sbjct: 198 VYDFETLKIRLRETAFLTKNLKIRLVDEREGQEKEKEFHYEGGIQEFVTFLNKGKEALYP 257

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G ++ I +++AM+ ND Y EN+  F NNI   +GGTHL+G ++ALT+    Y  
Sbjct: 258 DVIYCEGEKEKILVEVAMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYAR 317

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  + ++ G+D REG T ++S+K+ DP+F  QTK+KL +SE +  V+  V++ L+
Sbjct: 318 QNKLLKDSEANLSGEDIREGLTCIISVKIEDPQFEGQTKQKLGTSEAQVAVQGIVSEQLT 377

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK+I +K + A   R AAR+ARDLTRRK  LD   LPGKLADCS +DP++ 
Sbjct: 378 YFLEQNPAVAKVICEKSILAQRARAAARKARDLTRRKSALDGVGLPGKLADCSSKDPERC 437

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+F+VEGDSA G AK+GR+ E QA+LPLRGK+LNV++AR D++ +++EI  +ITA GTGI
Sbjct: 438 EIFIVEGDSALGPAKEGRNPETQAVLPLRGKVLNVQKARLDRIYANEEIKGMITAFGTGI 497

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FD++KLRYHKIIIMTDADVDGAHI TL+LTF +  MP LI  G +Y+ +PPL+ I 
Sbjct: 498 HED-FDLSKLRYHKIIIMTDADVDGAHISTLMLTFIYNFMPELIRKGHVYLAQPPLFTIQ 556

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + K   Y   +E  +  L                G ++  +L+ 
Sbjct: 557 KNKKHYYAYSDEEYQRILKEIGSDGADVSRFKGLGEMNTEELQE 600



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
             L  I    K            I    G  G  + R+KGLGEMN  +L ETTL+P++R+
Sbjct: 550 PPLFTIQKNKKHYYAYSDEEYQRILKEIGSDGADVSRFKGLGEMNTEELQETTLDPESRT 609

Query: 762 LLRVKITDASQA--DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LLRV ++D  +A  D  F+ LMGD+VEPRREFI++N+     LDI
Sbjct: 610 LLRVNMSDEDKAELDITFTTLMGDQVEPRREFIEQNARYVTNLDI 654


>gi|295135619|ref|YP_003586295.1| DNA gyrase subunit B [Zunongwangia profunda SM-A87]
 gi|294983634|gb|ADF54099.1| DNA gyrase subunit B [Zunongwangia profunda SM-A87]
          Length = 646

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 289/622 (46%), Positives = 408/622 (65%), Gaps = 12/622 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +   Y ADSIQ L+G++ V+ RPSMYIGDT G  GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSEEAKEKKYSADSIQALEGMEHVRMRPSMYIGDT-GVRGLHHLVYEVVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N D S TV DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDAIKVDINEDNSITVEDNGRGIPIDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS+ LK  + R+G I+E  +  G    P+   G     +GT VTF P   
Sbjct: 120 HGVGVSCVNALSTHLKATVYRDGQIWEQEYEIGKPMYPVKPVGETE-LSGTIVTFKPDPS 178

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
           IF    +++Y+TL  R+REL+FLN  ++I L DKR      E        + G++ F+ +
Sbjct: 179 IFQQTLEYSYETLAKRMRELAFLNKGIRIVLTDKREKDEKGEFLSEEFHSEEGLKEFIRF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD  ++P++   I ++G ++ I +++A+ +ND ++EN+  + NNI   +GGTHLSG R  
Sbjct: 239 LDGTREPIIADVISMEGEKNGIPVEVALVYNDTFNENLHSYVNNINTHEGGTHLSGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S   +K K  V GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTTTLKKYADASGLLEKVKFEVTGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVTSA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L  +LEE+P +AK IV+KV+ A+  R+AA++AR++ +RK  + I  LPGKL+
Sbjct: 359 VSQAVSEMLENYLEENPNDAKTIVQKVILAAQARNAAKKAREMVQRKTAMSIGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DPKK E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   ++  ++EI 
Sbjct: 419 DCSEQDPKKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMSHRVFDNEEIK 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRYHKI+IM DADVDG+HI TL+LTFFFR M  LI  
Sbjct: 479 NIYTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIETLILTFFFRYMKELIEQ 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI  PPLY + +G   +Y  +E+  ++     S   +I+ +     + ++      +
Sbjct: 539 GHIYIATPPLYLVKKGSKKRYAWNEKERDEIADEYSGGIQIQRYKGLGEMNAEQLWDTTM 598

Query: 592 D-DALKIDKLIKDFYPNHDKTF 612
           D +  K+ ++  D     D+ F
Sbjct: 599 DPERRKLRQVTIDNSGEADRIF 620



 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 7/199 (3%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF+ E  + I  +L   +        E+  K+ + S      +
Sbjct: 454 LPLRGKILNVEKAMSHRVFDNEEIKNIYTALGVTIG------TEEDSKALNLSKLRYHKI 507

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      V    +      F F    + I    I       L L+  G K +        
Sbjct: 508 VIMCDADVDGSHIETLILTFFFRYMKELIEQGHIY-IATPPLYLVKKGSKKRYAWNEKER 566

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D I      GI +QRYKGLGEMNA QLW+TT++P+ R L +V I ++ +AD +FS LMGD
Sbjct: 567 DEIADEYSGGIQIQRYKGLGEMNAEQLWDTTMDPERRKLRQVTIDNSGEADRIFSMLMGD 626

Query: 784 EVEPRREFIQENSLPSALD 802
           EV PRREFI++N+  + +D
Sbjct: 627 EVPPRREFIEKNAKYANID 645


>gi|212692798|ref|ZP_03300926.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855]
 gi|237709487|ref|ZP_04539968.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA]
 gi|237724917|ref|ZP_04555398.1| DNA gyrase B subunit [Bacteroides sp. D4]
 gi|265754693|ref|ZP_06089745.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA]
 gi|212664587|gb|EEB25159.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855]
 gi|229436655|gb|EEO46732.1| DNA gyrase B subunit [Bacteroides dorei 5_1_36/D4]
 gi|229456543|gb|EEO62264.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA]
 gi|263234807|gb|EEZ20375.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA]
          Length = 654

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 286/605 (47%), Positives = 392/605 (64%), Gaps = 18/605 (2%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+  +    ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L
Sbjct: 1   MSEEEKINGENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +  ++ R G IY+  +  G     +   G   + TGT+ TF P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG-TADITGTKQTFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFV 233
              IF+V ++ +D LQ R+REL++LN  + ISL D    +     ++       G++ FV
Sbjct: 179 DDTIFTVTEYKFDILQARMRELAYLNKGITISLTDRRIKEEDGSFKKEIFHSDEGVKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+R+ + L+   I +   ++N  I+ A+ +N GY E++  + NNI   +GGTH +G R
Sbjct: 239 RFLNRNNEALIDDVIYLNTEKNNTPIECAIMYNTGYRESLHSYVNNINTIEGGTHEAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALTR +  Y E +   +K K  + G+D REG  +V+S+K+ +P+F  QTK KL +SEV 
Sbjct: 299 SALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNSEVS 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V   V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR+  +RK  +    LPGK
Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESVQRKSPMGGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P++ ELFLVEGDSAGGSAKQGRSR  QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +ITALG   G          +I+KLRYHK++IMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 VNNIITALGVRFGVDGNDDSKKANIDKLRYHKVVIMTDADVDGSHIDTLIMTLFYRYMPE 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISK 584
           +I NG LYI  PPLY  ++GK  +Y   EE+ + ++      +E           G ++ 
Sbjct: 539 IIENGHLYIANPPLYKCSKGKISEYCYTEEARQAFIQKYGDGQENGIHTQRYKGLGEMNP 598

Query: 585 NDLRN 589
             L  
Sbjct: 599 EQLWE 603



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           GI  QRYKGLGEMN  QLWETT+NP+TR L +V I +A+  D +FS LMGD+V PRREFI
Sbjct: 584 GIHTQRYKGLGEMNPEQLWETTMNPETRILKQVTIDNAANVDYIFSMLMGDDVAPRREFI 643

Query: 793 QENSLPSALD 802
           ++N+  + +D
Sbjct: 644 EKNATYANID 653


>gi|291165885|gb|EFE27932.1| DNA gyrase, B subunit [Filifactor alocis ATCC 35896]
          Length = 638

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 301/591 (50%), Positives = 408/591 (69%), Gaps = 7/591 (1%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+    +  Y AD IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNAIDE+L G
Sbjct: 1   MSETENKNVQYGADQIQVLEGLEPVRKRPGMYIGST-GAKGLHHLVYEVVDNAIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I V +    +  V D+GRGIPT++H + G S  E ++T LHAGGKF    YKVSGG
Sbjct: 60  FCKTIYVAIEEGNAIRVIDDGRGIPTEVHPKTGKSTVETVLTVLHAGGKFGTGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS++ ++ +KR G IY   F  GI +  L   G    +TGT V F P +
Sbjct: 120 LHGVGVSVVNALSTFFRVTVKRGGKIYVQEFSKGISETELQEVGVTE-ETGTMVEFQPDA 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF   ++ Y+TL++RLREL+FLN  + I L DKR+ + ++    Y GG++ FV +L+++
Sbjct: 179 EIFDELEYRYETLEYRLRELAFLNKGISIVLEDKRAGQEQKKEFSYLGGLKEFVVFLNKN 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K PL +  I  +   D   +++A+++ D Y EN+  F NNI   +GG HL G ++ALTR 
Sbjct: 239 KTPLHKDVIHFEKQIDEYYLEIAIQYTDAYIENIYSFANNINTIEGGMHLIGFKTALTRT 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y++KS  +   + S+ G+D REG T+++SIK+P+P++  QTK KL + +VRSVV+SF
Sbjct: 299 INDYLKKSNKN--KEESLSGEDVREGLTAIISIKLPEPQYEGQTKTKLGNPQVRSVVDSF 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + +   A+LEE+P  AKII++K ++A   R+AA+RARDLTRRKGVLD  SLPGKLADCSE
Sbjct: 357 LAEYFGAYLEENPQVAKIIIEKAMNARSAREAAKRARDLTRRKGVLDSTSLPGKLADCSE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP  SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE++R D++L+S+EI  +IT
Sbjct: 417 RDPALSEIYIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVEKSRLDRILTSEEIKNMIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A G  IG++ FD +KLRYHKI+IMTDADVDGAHIRTLLLTF FR M  LI NG++YI +P
Sbjct: 477 AFGCSIGEE-FDESKLRYHKIVIMTDADVDGAHIRTLLLTFMFRYMKPLIENGYVYIAQP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PL+ I RGK   Y  +E+ L   L       +         G ++   L  
Sbjct: 536 PLFKIHRGKKEVYAYNEKELPAILQEFGEGHKPGIQRYKGLGEMNPEQLWE 586



 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 2/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++ N +        + +  S      +V      V    +    
Sbjct: 454 ILNVEKSRLDRILTSEEIKNMITAFGCSIGEEFDESKLRYHKIVIMTDADVDGAHIRTLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRY 739
             F F      I +  +      +  +     ++       L   +   G      +QRY
Sbjct: 514 LTFMFRYMKPLIENGYVYIAQPPLFKIHRGKKEVYAYNEKELPAILQEFGEGHKPGIQRY 573

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QLWETT+NPDTR+LLRV + D S ADD FS LMGD+VEPRREFI  N+   
Sbjct: 574 KGLGEMNPEQLWETTMNPDTRTLLRVTVEDFSGADDTFSMLMGDKVEPRREFIHNNAQYV 633

Query: 800 -ALDI 803
             LDI
Sbjct: 634 KNLDI 638


>gi|317478438|ref|ZP_07937599.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36]
 gi|316905397|gb|EFV27190.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36]
          Length = 653

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 284/604 (47%), Positives = 388/604 (64%), Gaps = 17/604 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++      N SY A++IQ+L+GL+AV+KRP+MYIGD     GLHH++YEV+DN+IDE+L
Sbjct: 1   MTEEQIHSNNGSYSAENIQVLEGLEAVRKRPAMYIGDISS-KGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +  ++ R G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYSCGHPLYSVKEVG-TTDITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFV 233
              IF+   +NYD L  R+REL++LN+ ++ISL D R  +     ++   + + G++ FV
Sbjct: 179 DGTIFTETVYNYDILATRMRELAYLNAGIKISLTDLRVKDEEGNAKKEIFYSEEGLKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y+D  ++  M   I I   +    +++A+ +N  Y+ENV  + NNI   +GGTHL+G R
Sbjct: 239 RYVDSSREHFMNDVIYINTEKQGTPVEVAIMYNTSYNENVHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E +   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK+IV KV+ A+  R AAR+AR+  +RK  +    +PGK
Sbjct: 359 GAVDQAVGEALTYYLEEHPKEAKLIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS +DP++ ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           +  +I ALG   G         +I+KLRY KIIIMTDADVDG+HI TL++T FFR  P +
Sbjct: 479 VNNIIQALGIRFGVDGEDSKEANIDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQV 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585
           I  G LYI  PPLY  T+GK+ +Y   ++  + ++       E  +        G ++  
Sbjct: 539 IQQGCLYIATPPLYLCTKGKAKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPE 598

Query: 586 DLRN 589
            L  
Sbjct: 599 QLWE 602



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 53/66 (80%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT+NP+ R L +V + +A++AD +FS LMG++V PRR+FI++N+
Sbjct: 587 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENAAEADYIFSMLMGEDVGPRRDFIEKNA 646

Query: 797 LPSALD 802
             + +D
Sbjct: 647 TYANID 652


>gi|72388583|gb|AAZ67935.1| DNA gyrase subunit B [Psychrobacter luti]
          Length = 746

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 329/731 (45%), Positives = 448/731 (61%), Gaps = 46/731 (6%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
           SGLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H EEG+SAA+V
Sbjct: 7   SGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAAQV 66

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y  ++ +G+ D  
Sbjct: 67  IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYNDGVPDGD 126

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           +     A + TGT++ F PS+D+F+   F YD L  RLRELSFLNS V+I L D+R  + 
Sbjct: 127 IQQ-MEATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKR 185

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
            E    +KGG+  FVSY++  K  +      +    D IS+++A++W D Y+E VLCFTN
Sbjct: 186 HE--FEHKGGLSEFVSYINAGKDGINDVFHFVSEQDDGISVEVALQWTDTYNEKVLCFTN 243

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHLSG RSALTR + SY+++    KK+K    GDD REG T+++S+K+PDP+
Sbjct: 244 NIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPK 303

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEV+S VES ++D  + +L E+P   K I  K++DA+  RDAAR+AR++
Sbjct: 304 FSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSTGKAIASKIIDAARARDAARKAREM 363

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKIL
Sbjct: 364 TRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKIL 423

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLL
Sbjct: 424 NVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLL 483

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TFFFRQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ ++          
Sbjct: 484 TFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTKLHISAD 543

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLAS 636
              I+   L   ++D  +   +       +    ++    +   + +   D+    +  +
Sbjct: 544 APAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDMTYDKSAMEAWKA 603

Query: 637 KLANRLNFIAE---------------------------------KSEKSWHGSIN----- 658
            L  +L                                      + E+S    I+     
Sbjct: 604 SLQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMKPVIEPEQSVASDIDGEAAS 663

Query: 659 ---NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                   +      +   ++L+ S I S         S            +        
Sbjct: 664 AKAQWLPRITVYVHQLAHNYLLDASFINSGEYTKLLRLSAEWNTLLAEDTFIRREATAGT 723

Query: 716 ITGPCSLLDTI 726
              P + LD +
Sbjct: 724 TKMPSTRLDYL 734


>gi|183219432|ref|YP_001837428.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909578|ref|YP_001961133.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774254|gb|ABZ92555.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777854|gb|ABZ96152.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 639

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 291/590 (49%), Positives = 401/590 (67%), Gaps = 4/590 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++Y A  I+IL+GL+AV+KRP MYIG T  ESGLH M+YEV+DN++DE++ G+
Sbjct: 1   MSNQTDQNAYSASKIKILEGLEAVRKRPGMYIG-TQDESGLHKMVYEVVDNSVDEAMAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V +  +    V DNGRGIPT +H ++G S  EV++T LHAGGKF   +YKVSGGL
Sbjct: 60  CTEIDVRILPENIIEVRDNGRGIPTGIHPDKGKSTIEVVLTILHAGGKFENDAYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS++L++ + +EG ++   +  G+    + + G   +  GT V F P   
Sbjct: 120 HGVGVSVVNALSTYLEVEVHQEGKLHYQKYQAGVPVEDVKIIGETTH-RGTVVRFRPDHT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+  DF++DTL  R RE++FLN  + I + D+R  E  +    + GGI +FV Y+   K
Sbjct: 179 IFTTVDFSFDTLSARFREIAFLNKGLLIRIEDQRKEEFAKHEFKFDGGIVSFVEYITESK 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL    +   G ++N+  ++A+++ D Y EN+ CFTN I    GGTHL G R+ALTR +
Sbjct: 239 HPLH-KVLHFVGEKENVWAEIALQYCDTYSENIFCFTNAINNNLGGTHLEGFRTALTRTL 297

Query: 301 TSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
             +++K     K + +   GDD +EG  +V+SIK+P P+F+SQTKEKLV++EV+ ++++ 
Sbjct: 298 NDHLKKDQTLFKKQPNGLQGDDIKEGLCAVISIKIPQPQFNSQTKEKLVNAEVKGLMQTI 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             +GL+ + EE+P   K I++K + AS  R+AARRARDLTRRK VL+   LPGKLADCSE
Sbjct: 358 TGEGLNRYFEENPAIIKKILEKCILASKAREAARRARDLTRRKTVLEGGGLPGKLADCSE 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP+  ELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS++EI TLIT
Sbjct: 418 KDPEHCELFLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSNEEIRTLIT 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +GTGIG D F++ KLRY KIIIMTDADVDG+HIRTLLLTFFFR M  +I  G LY+ +P
Sbjct: 478 VMGTGIGDDEFNVEKLRYRKIIIMTDADVDGSHIRTLLLTFFFRYMKPVIERGSLYVAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +  GK   YV  +   ++ L  +   + +       G ++   L +
Sbjct: 538 PLYLLKFGKEAVYVYSDREKDEILKARPNDKVVIQRYKGLGEMNPEQLWD 587



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 1/155 (0%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            +  ++        ++      V    +      F F      I    +      +  L 
Sbjct: 484 GDDEFNVEKLRYRKIIIMTDADVDGSHIRTLLLTFFFRYMKPVIERGSLYVAQPPLYLLK 543

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
              + + +       + + +     + +QRYKGLGEMN  QLW+TT++P  R +L+VK+ 
Sbjct: 544 FGKEAVYVYSDREKDEILKARPNDKVVIQRYKGLGEMNPEQLWDTTMDPKERVMLQVKLQ 603

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS-LPSALD 802
           D  +A+D F+ LMGDEV PRR FI+ NS   + LD
Sbjct: 604 DFVEAEDTFNILMGDEVSPRRRFIEANSYKVANLD 638


>gi|160891431|ref|ZP_02072434.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC 8492]
 gi|270295441|ref|ZP_06201642.1| DNA gyrase, B subunit [Bacteroides sp. D20]
 gi|156858838|gb|EDO52269.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC 8492]
 gi|270274688|gb|EFA20549.1| DNA gyrase, B subunit [Bacteroides sp. D20]
          Length = 653

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 284/604 (47%), Positives = 388/604 (64%), Gaps = 17/604 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++      N SY A++IQ+L+GL+AV+KRP+MYIGD     GLHH++YEV+DN+IDE+L
Sbjct: 1   MTEEQIHSNNGSYSAENIQVLEGLEAVRKRPAMYIGDISS-KGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +  ++ R G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYSCGHPLYSVKEVG-TTDITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFV 233
              IF+   +NYD L  R+REL++LN+ ++ISL D R  +     ++   + + G++ FV
Sbjct: 179 DDTIFTETVYNYDILATRMRELAYLNAGIKISLTDLRVKDEEGNAKKEIFYSEEGLKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y+D  ++  M   I I   +    +++A+ +N  Y+ENV  + NNI   +GGTHL+G R
Sbjct: 239 RYVDSSREHFMNDVIYINTEKQGTPVEVAIMYNTSYNENVHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E +   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK+IV KV+ A+  R AAR+AR+  +RK  +    +PGK
Sbjct: 359 GAVDQAVGEALTYYLEEHPKEAKLIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS +DP++ ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           +  +I ALG   G         +I+KLRY KIIIMTDADVDG+HI TL++T FFR  P +
Sbjct: 479 VNNIIQALGIRFGVDGEDSKEANIDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQV 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585
           I  G LYI  PPLY  T+GK+ +Y   ++  + ++       E  +        G ++  
Sbjct: 539 IQQGCLYIATPPLYLCTKGKAKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPE 598

Query: 586 DLRN 589
            L  
Sbjct: 599 QLWE 602



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 53/66 (80%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT+NP+ R L +V + +A++AD +FS LMG++V PRR+FI++N+
Sbjct: 587 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENAAEADYIFSMLMGEDVGPRRDFIEKNA 646

Query: 797 LPSALD 802
             + +D
Sbjct: 647 TYANID 652


>gi|110637817|ref|YP_678024.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406]
 gi|110280498|gb|ABG58684.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 652

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 289/603 (47%), Positives = 407/603 (67%), Gaps = 16/603 (2%)

Query: 1   MSDNIQNSS--YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+  + ++  Y ADSIQ+L+GL+AV+KRP+MYIGD  G  GLHH+++EV+DN+IDE+L 
Sbjct: 1   MSEITEQNAAGYSADSIQVLEGLEAVRKRPAMYIGDI-GIKGLHHLVWEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   ITV +N + S TV+DNGRGIPT +  + G SA EV++T LHAGGKF++ SYKVSG
Sbjct: 60  GHCTDITVEINENNSITVTDNGRGIPTGVIAKYGKSALEVVLTVLHAGGKFDKDSYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS+ +K+ +   G +++  +  GI    +   G + +  GT+V FLP 
Sbjct: 120 GLHGVGVSCVNALSTDMKVTVYSHGKVHQQEYKKGIPQYDVKEIGES-DLHGTKVQFLPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVS 234
             IF+  ++ Y+T+ +RLRELSFLN  ++I+L D R      +        +GG+  FV 
Sbjct: 179 DTIFTSSEYKYETIANRLRELSFLNKGIRITLQDHRQVDAEGKSEIEMFHSEGGLREFVD 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLD  ++ L+ +P+ ++  +  I +++AM +N  Y ENV  + NNI   +GGTH++G R 
Sbjct: 239 YLDSTREKLIPTPLYMESDKGPIPVEVAMLYNTSYSENVFSYVNNINTIEGGTHVAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY +KS   +K K  V GDD REG T+V+S+K+ +P+F  QTK KL +S+V  
Sbjct: 299 ALTRTLKSYADKSGMLEKLKMEVTGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSDVMG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V + L+ +LEE+P EAKIIV+KV+ A+  R+AAR+AR++ +RK VL  + LPGKL
Sbjct: 359 AVDQVVGEMLNTYLEENPKEAKIIVQKVILAAQARNAARKAREMVQRKNVLSGSGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCSE DP+K EL+LVEGDSAGGSAKQGR R+  AILPLRGKILNVE+A+  ++  + EI
Sbjct: 419 ADCSESDPEKCELYLVEGDSAGGSAKQGRDRKYHAILPLRGKILNVEKAQEHRIYENDEI 478

Query: 475 GTLIT----ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +IT    + GT  G+   ++ KLRYHK+IIMTDAD+DG+HIRTL+LTFFFR M +LI 
Sbjct: 479 KNMITALGVSFGTEEGEKVLNLTKLRYHKVIIMTDADIDGSHIRTLILTFFFRYMRALID 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI----ELFCDSKGVISKND 586
            G +YI +PPLY + RGK  +Y   EE  E  +   +   +            G ++   
Sbjct: 539 GGHVYIAQPPLYLVKRGKEEKYCWTEEQREAAVKELAKDGKEDSVGIQRYKGLGEMNPEQ 598

Query: 587 LRN 589
           L +
Sbjct: 599 LWS 601



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 8/209 (3%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL--NFIAEKSEKSWHGSINN 659
           +     +      +  I  V   +  +         +   L  +F  E+ EK  + +   
Sbjct: 445 QGRDRKYHAILPLRGKILNVEKAQEHRIYENDEIKNMITALGVSFGTEEGEKVLNLTKLR 504

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITG 718
              ++      +    +      F F      I    +       L L+  G + K    
Sbjct: 505 YHKVIIMTDADIDGSHIRTLILTFFFRYMRALIDGGHVY-IAQPPLYLVKRGKEEKYCWT 563

Query: 719 PCSLLDTIFSIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                  +  + + G    + +QRYKGLGEMN  QLW TT++P+ RSL +V +  A++AD
Sbjct: 564 EEQREAAVKELAKDGKEDSVGIQRYKGLGEMNPEQLWSTTMDPEKRSLKQVSVESAAEAD 623

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803
            LFS LMGDEV PRR+FI++N+  + +DI
Sbjct: 624 HLFSMLMGDEVAPRRDFIEKNARYAKIDI 652


>gi|34541335|ref|NP_905814.1| DNA gyrase subunit B [Porphyromonas gingivalis W83]
 gi|188994277|ref|YP_001928529.1| DNA gyrase B subunit [Porphyromonas gingivalis ATCC 33277]
 gi|34397651|gb|AAQ66713.1| DNA gyrase, B subunit [Porphyromonas gingivalis W83]
 gi|188593957|dbj|BAG32932.1| DNA gyrase B subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 654

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 295/629 (46%), Positives = 403/629 (64%), Gaps = 17/629 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N   S Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L GY D
Sbjct: 7   KNTSASEYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEALAGYCD 65

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V +  D S TV DNGRGIP D H++EG SA EV++T LHAGGKF++ SYKVSGGLHG
Sbjct: 66  NVEVIIEEDNSITVRDNGRGIPVDYHEKEGKSALEVVLTVLHAGGKFDKGSYKVSGGLHG 125

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVS VNALS++L+  + R G I+   F  G   + + V GS    TGT + F P S IF
Sbjct: 126 VGVSCVNALSTYLRAEVYRNGKIHMQEFSCGKPLHDVEVIGSTE-RTGTTIQFKPDSSIF 184

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLD 237
           SV ++ Y  L  RLRELS+LN+ + ++L DKR+ +      ++     + G++ FV +LD
Sbjct: 185 SVTEYQYSILAKRLRELSYLNAGITLTLTDKRTLKEDGSGYKQDVFRSEEGLKEFVRHLD 244

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R K+PL+ + I I   +  I +++AM +N  Y ENV  + N+I   +GGTHL+G R  LT
Sbjct: 245 RMKEPLVDNVIHIVTEKQGIPVEVAMTYNTSYLENVYSYVNDINTIEGGTHLAGFRRGLT 304

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +  Y   S    K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV   V+
Sbjct: 305 RTLKKYATDSKLLDKVKVEITGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTGAVD 364

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V++ L  +LEEHP EAK+IV KV+ A+  R AAR+AR++ +RK  L    LPGKLADC
Sbjct: 365 MAVSEALEYYLEEHPKEAKLIVDKVVLAATARQAARKAREMVQRKSPLSGGGLPGKLADC 424

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +DP++ ELFLVEGDSAGG+AKQGR RE QAILPLRGKILNVE+A   K+  S+EI  +
Sbjct: 425 SSKDPEQCELFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFESEEIRNI 484

Query: 478 ITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
            TALG  IG +        +KLRYHK++IMTDADVDG+HI TL+LTFFFR M +LI NG+
Sbjct: 485 YTALGVTIGTEEDSKALNLSKLRYHKVVIMTDADVDGSHIATLILTFFFRNMRTLIENGY 544

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           ++I  PPLY   +GK  +Y   E+  + ++   +   E  +       + +      +++
Sbjct: 545 VFIATPPLYLCKKGKEQEYCWTEQQRQAFVDRYADGNESRVHVQRYKGLGE------MNE 598

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               +  +        K  IE A  +   
Sbjct: 599 EQLWETTMDPEKRTLRKVTIENAAEADAI 627



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 92/209 (44%), Gaps = 23/209 (11%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +        E+  K+ + S      +
Sbjct: 458 LPLRGKILNVEKAMQHKVFESEEIRNIYTALGVTIG------TEEDSKALNLSKLRYHKV 511

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIKITGP 719
           V      V    +      F F     R     IE  Y+      L L   G + +    
Sbjct: 512 VIMTDADVDGSHIATLILTFFF-----RNMRTLIENGYVFIATPPLYLCKKGKEQEYCWT 566

Query: 720 CSLLDTIFS------IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
                            R  + +QRYKGLGEMN  QLWETT++P+ R+L +V I +A++A
Sbjct: 567 EQQRQAFVDRYADGNESR--VHVQRYKGLGEMNEEQLWETTMDPEKRTLRKVTIENAAEA 624

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALD 802
           D +FS LMGDEV PRREFI+EN+  + +D
Sbjct: 625 DAIFSMLMGDEVGPRREFIEENATYARID 653


>gi|150003955|ref|YP_001298699.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482]
 gi|254880798|ref|ZP_05253508.1| DNA gyrase B subunit [Bacteroides sp. 4_3_47FAA]
 gi|294775119|ref|ZP_06740648.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510]
 gi|319639808|ref|ZP_07994538.1| B subunit [Bacteroides sp. 3_1_40A]
 gi|149932379|gb|ABR39077.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482]
 gi|254833591|gb|EET13900.1| DNA gyrase B subunit [Bacteroides sp. 4_3_47FAA]
 gi|294451163|gb|EFG19634.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510]
 gi|317388625|gb|EFV69474.1| B subunit [Bacteroides sp. 3_1_40A]
          Length = 654

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 286/605 (47%), Positives = 392/605 (64%), Gaps = 18/605 (2%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+  +    ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L
Sbjct: 1   MSEEEKINGENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS+ +  ++ R G IY+  +  G     +   G   + TGT+ TF P
Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG-TADITGTKQTFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFV 233
              IF+V ++ +D LQ R+REL++LN  + ISL D    +     ++       G++ FV
Sbjct: 179 DDTIFTVTEYKFDILQARMRELAYLNKGITISLTDRRIKEEDGSFKKEIFHSDEGVKEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+R+ + L+   I +   ++N  I+ A+ +N GY E++  + NNI   +GGTH +G R
Sbjct: 239 RFLNRNNEALINDVIYLNTEKNNTPIECAIMYNTGYRESLHSYVNNINTIEGGTHEAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALTR +  Y E +   +K K  + G+D REG  +V+S+K+ +P+F  QTK KL +SEV 
Sbjct: 299 SALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNSEVS 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V   V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR+  +RK  +    LPGK
Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESVQRKSPMGGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P++ ELFLVEGDSAGGSAKQGRSR  QAILPLRGKILNVE+A + K   S E
Sbjct: 419 LADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 474 IGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +ITALG   G          +I+KLRYHK++IMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 VNNIITALGVRFGVDGNDDSKKANIDKLRYHKVVIMTDADVDGSHIDTLIMTLFYRYMPE 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISK 584
           +I NG LYI  PPLY  ++GK  +Y   EE+ + ++      +E           G ++ 
Sbjct: 539 IIENGHLYIANPPLYKCSKGKISEYCYTEEARQAFIQKYGDGQENGIHTQRYKGLGEMNP 598

Query: 585 NDLRN 589
             L  
Sbjct: 599 EQLWE 603



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           GI  QRYKGLGEMN  QLWETT+NP+TR L +V I +A+  D +FS LMGD+V PRREFI
Sbjct: 584 GIHTQRYKGLGEMNPEQLWETTMNPETRILKQVTIDNAANVDYIFSMLMGDDVAPRREFI 643

Query: 793 QENSLPSALD 802
           ++N+  + +D
Sbjct: 644 EKNATYANID 653


>gi|160883910|ref|ZP_02064913.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483]
 gi|156110640|gb|EDO12385.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483]
          Length = 652

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 289/603 (47%), Positives = 390/603 (64%), Gaps = 16/603 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R+G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRDGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
            + IF+   ++Y  L  RLREL++LN+ ++I+L D+R        +    + + G+  FV
Sbjct: 179 DNTIFTETVYDYKILASRLRELAYLNAGLRITLTDRRVVNEDGSFKGEQFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   +  I I++A+ +N G+ ENV  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPGK
Sbjct: 359 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS++DP K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S E
Sbjct: 419 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478

Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  + TALG  IG D         KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I
Sbjct: 479 IRNIYTALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586
            NG+LYI  PPLY   +GK  +Y   +   + ++       E  +        G ++   
Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598

Query: 587 LRN 589
           L  
Sbjct: 599 LWE 601



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+
Sbjct: 586 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 645

Query: 797 LPSALD 802
             + +D
Sbjct: 646 TYANID 651


>gi|255010097|ref|ZP_05282223.1| DNA gyrase subunit B [Bacteroides fragilis 3_1_12]
 gi|313147892|ref|ZP_07810085.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136659|gb|EFR54019.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 652

 Score =  618 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 291/603 (48%), Positives = 396/603 (65%), Gaps = 16/603 (2%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R G IY+  +  G     +   G   + TGT+  F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYAVKEVG-TADHTGTKQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
              IF+   ++Y  L  RLREL++LN+ ++ISL D+R        +  T + + G+  FV
Sbjct: 179 DDSIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVINEDGSFKHETFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   + NI I++A+ +N G+ EN+  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNTEKQNIPIEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDSKMLEKVKIEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPGK
Sbjct: 359 GAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS++DP+K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S+E
Sbjct: 419 LADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESEE 478

Query: 474 IGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  + TALG  IG +      +I+KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I
Sbjct: 479 IRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586
            NG+LYI  PPLY   +GK  +Y   +   + ++       E  +        G ++   
Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598

Query: 587 LRN 589
           L  
Sbjct: 599 LWE 601



 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 13/204 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+       E  + I  +L   +    +  A   +K  +  I      
Sbjct: 456 LPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANIDKLRYHKI------ 509

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL- 722
           +      V    +      F F    + I +  +       L L   G K++        
Sbjct: 510 IIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY-IATPPLYLCKKG-KVEEYCWTDAQ 567

Query: 723 ----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               +DT        I  QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS
Sbjct: 568 RQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFS 627

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
            LMG++V PRREFI+EN+  + +D
Sbjct: 628 MLMGEDVGPRREFIEENATYANID 651


>gi|81251098|gb|ABB69895.1| DNA gyrase subunit B [Nitrosomonas sp. CNS332]
          Length = 554

 Score =  618 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 339/549 (61%), Positives = 428/549 (77%), Gaps = 7/549 (1%)

Query: 2   SDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           + N ++S   YD++SI+ILKGLDAV+KRP MYIGDT   +GLHHM++EV+DNAIDE+L G
Sbjct: 9   TKNTESSQRDYDSNSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAG 68

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           Y D I+V ++ D S +V DNGRGIPTD+ +  E+  SAAE++MT LHAGGKF+  SYKVS
Sbjct: 69  YCDEISVIIHADNSISVQDNGRGIPTDIKQDDEQKRSAAEIVMTELHAGGKFDDNSYKVS 128

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+L I R+GN++++ F +G+   PL VTG   +  GTEV FL 
Sbjct: 129 GGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHGTEVHFLA 187

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S  IF    ++YD    RLRELSFLN  ++I L+D+R  + RE T  + GGI  FV Y++
Sbjct: 188 SQAIFGNVTYHYDIFARRLRELSFLNYGIRIRLVDQR--DNREETFAFSGGIRNFVEYIN 245

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R K  L  S    +G +D+I++++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+T
Sbjct: 246 RTKTVLHPSIFYAKGMKDDITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMT 305

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+EK+  +KK K    GDD REG T VLSIK+ +P+FSSQTKEKLVSSEVR VVE
Sbjct: 306 RTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSSQTKEKLVSSEVRPVVE 365

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V+  LS ++ E+P EAKII  K+++A+  R+AAR+AR+LTRRKGVLD   LPGKLADC
Sbjct: 366 EVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRRKGVLDSMGLPGKLADC 425

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DPK  EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++SSQEI +L
Sbjct: 426 QEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLISSQEIVSL 485

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI 
Sbjct: 486 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIA 545

Query: 538 KPPLYGITR 546
           +PPLY I  
Sbjct: 546 QPPLYKIKH 554


>gi|189499015|ref|YP_001958485.1| DNA gyrase, B subunit [Chlorobium phaeobacteroides BS1]
 gi|189494456|gb|ACE03004.1| DNA gyrase, B subunit [Chlorobium phaeobacteroides BS1]
          Length = 644

 Score =  618 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 297/639 (46%), Positives = 421/639 (65%), Gaps = 8/639 (1%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+   N    +Y+A +IQIL G++ V+KRP+MYIGD     GLHH+IYE++DN+IDE+L
Sbjct: 1   MSEIQKNTSPQAYEATNIQILDGIEHVRKRPAMYIGDLHS-RGLHHLIYEIVDNSIDETL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY + I ++LN DGS TV+DNGRGIP D+H ++  SA E++MT + AGGKF++ +YKVS
Sbjct: 60  AGYNESIELSLNPDGSVTVTDNGRGIPVDIHPQKKKSALELVMTLIGAGGKFDKGAYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS W ++ + REGNI+   +  GI    + V G +   TGT+ TF+P
Sbjct: 120 GGLHGVGASVVNALSEWCEVEVYREGNIWFQRYHKGIPQRDVEVIGEST-KTGTKTTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             DIF + +F  D +  R+REL+FLN+ ++I + D    E    T  Y+GGI+ FV++ D
Sbjct: 179 DPDIFKITEFRKDIVVDRMRELAFLNNILKIVVKDIDGSE---ETFHYEGGIKEFVTFTD 235

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            ++  L++ P+ I G RD+  +++A+++ND Y ENV  + NNI   +GGTH++G R ALT
Sbjct: 236 HNRISLLKEPVYISGERDSTVVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY +K+   K  K S+ GDD +EG T+++S+K+ +P+F  QTK KL +SE +S+VE
Sbjct: 296 RTLNSYAQKNDLLKNLKLSLTGDDFKEGLTAIISVKVAEPQFEGQTKTKLGNSETQSIVE 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S VN+ LS + E +P   K I++KV  A++ RDAAR+A+DLTRRK  L+ + LPGKLADC
Sbjct: 356 SIVNEQLSDFAESNPGVLKTIIEKVKSAALSRDAARKAKDLTRRKSALESSGLPGKLADC 415

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S  DP+  EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  KML ++EI T+
Sbjct: 416 SINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTI 475

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALGT  G++ F + KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI  G ++I 
Sbjct: 476 ILALGTSFGEEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIA 535

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY I  GK  +Y  D++     + +    ++     + +      ++      +  +
Sbjct: 536 QPPLYLIKSGKEQKYAWDDDERNGIVESIRKKQKGRGNINIQRYKGLGEMNPEQLWSTTM 595

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           D   +       +  +E   +      +  +     +  
Sbjct: 596 DPEHRSLLQVSVENAMEADQVFSTLMGDKVEPRRNFIEK 634



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E+ +         ++      V    +      F F      I + ++       L LI
Sbjct: 484 GEEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVF-IAQPPLYLI 542

Query: 709 CNGDKIKITGPCS----LLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
            +G + K          ++++I     GR  I++QRYKGLGEMN  QLW TT++P+ RSL
Sbjct: 543 KSGKEQKYAWDDDERNGIVESIRKKQKGRGNINIQRYKGLGEMNPEQLWSTTMDPEHRSL 602

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L+V + +A +AD +FS LMGD+VEPRR FI++N+     LD+
Sbjct: 603 LQVSVENAMEADQVFSTLMGDKVEPRRNFIEKNARYVRRLDV 644


>gi|189345573|ref|YP_001942102.1| DNA gyrase, B subunit [Chlorobium limicola DSM 245]
 gi|189339720|gb|ACD89123.1| DNA gyrase, B subunit [Chlorobium limicola DSM 245]
          Length = 643

 Score =  618 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 288/593 (48%), Positives = 400/593 (67%), Gaps = 10/593 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +     SSY A +IQIL G++ V+ RP+MYIGD     GLHH++YE++DN+IDE+L GY 
Sbjct: 4   TGTQTPSSYLATNIQILDGIEHVRMRPAMYIGDIH-TRGLHHLVYEIVDNSIDETLGGYN 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V LN DGS TV D GRGIP D+H E+  SA E++MT + AGGKF++ +YKVSGGLH
Sbjct: 63  DYIFVGLNPDGSVTVIDRGRGIPVDIHPEKQKSALELVMTVIGAGGKFDKGAYKVSGGLH 122

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS W ++ + R+G  Y   +  G+    +   G + +  GT+ TF P  +I
Sbjct: 123 GVGASVVNALSEWCEVEVYRDGKAYFQRYERGVPQGDVKEIGPS-DLRGTKTTFKPDHEI 181

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F   +F  D +  R+REL+FLN +++I++   +  +  E    Y+GG+  FV + D+++ 
Sbjct: 182 FKTTEFRRDIIIDRMRELAFLNKTLRITV---QDSDGNEEVFHYEGGLNEFVQFTDQNRI 238

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L++ P+ I G RD+  ++LA+++ND Y ENV  + NNI   +GGTH++G R ALTR + 
Sbjct: 239 KLLKEPVYIYGERDSTIVELALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLN 298

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y +K+   K  K S+ GDD +EG T+V+S+K+ +P+F  QTK KL +SE +S+VES VN
Sbjct: 299 AYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESIVN 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ +LE +P   K+I++KV  A+M R+AAR+A++LTRRK VL+ + LPGKLADCS  D
Sbjct: 359 EQLAEFLESNPNVLKLIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSIND 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P+  EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  KML ++EI T+I AL
Sbjct: 419 PEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILAL 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT  G++ F   KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI  G ++I +PPL
Sbjct: 479 GTSFGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIAQPPL 538

Query: 542 YGITRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589
           Y +  GK  QY  D++           + +  +          G ++   L +
Sbjct: 539 YLVKSGKDQQYAWDDDERNAVIESLRKMQKGKANVHIQRYKGLGEMNPEQLWS 591



 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E+ +         ++      V    +      F F      I + ++       L L+
Sbjct: 483 GEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVF-IAQPPLYLV 541

Query: 709 CNGDKIKITGPCS----LLDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
            +G   +          +++++     G+  + +QRYKGLGEMN  QLW TT++P  RSL
Sbjct: 542 KSGKDQQYAWDDDERNAVIESLRKMQKGKANVHIQRYKGLGEMNPEQLWSTTMDPAHRSL 601

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L+V + +A +AD +FS LMGD+VEPRR+FI++N+     LD+
Sbjct: 602 LQVSVENAMEADKVFSTLMGDKVEPRRDFIEKNARYVRRLDV 643


>gi|296127762|ref|YP_003635014.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563]
 gi|296019578|gb|ADG72815.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563]
          Length = 637

 Score =  618 bits (1595), Expect = e-174,   Method: Composition-based stats.
 Identities = 278/585 (47%), Positives = 393/585 (67%), Gaps = 4/585 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
              +Y + +IQ+L+GLD V+KRP MYIG T G  GLHH++YEV+DN+IDE++ GY   IT
Sbjct: 4   AEKTYSSKNIQVLEGLDPVRKRPGMYIGST-GAQGLHHLVYEVVDNSIDEAMAGYCKNIT 62

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+  D    V D+GRGIP D+H +  ISA EV+MT+LHAGGKF+ ++YKVSGGLHGVGV
Sbjct: 63  VTIEKDNIIKVEDDGRGIPVDMHPKLKISALEVVMTKLHAGGKFDNETYKVSGGLHGVGV 122

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L   ++++G +Y   +  G+ + P+   G      GT V F   +DIF   
Sbjct: 123 SVVNALSTELIAEVRKDGKLYRQVYHRGVPEEPVKEVG-TSTKNGTTVIFKADADIFETT 181

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            ++Y  L +RLREL+FLN  ++I+L DKR  E      +Y+GGIE F+++L+ +KK L  
Sbjct: 182 VYDYKILANRLRELAFLNRGIRITLTDKREAETVSNEFYYEGGIEMFITHLNENKKALHD 241

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI +  + D   +++AM++ D Y+EN+  + NNI   +GGTHL G R+ALTR  T + +
Sbjct: 242 KPIYLHKTEDKTDVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTALTRVYTDFAK 301

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    KK+K + +G+D REG  +V+S+K+P+P+F  QTK KL ++EVR+V E  V +GL+
Sbjct: 302 KLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAVTEKLVVEGLN 361

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +  ++P   K I++K++ A+  R+AAR+ARDL RRK  L+  SLPGKLADCSE++  K 
Sbjct: 362 DYFSQNPKVIKAILEKIISAANAREAARKARDLARRKNALESDSLPGKLADCSEQEVDKC 421

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGG+AK GR R  QAILPLRGK+LNVE+AR DK++ ++ +  +I ALG G+
Sbjct: 422 EVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLKPIIAALGCGV 481

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G   FDI+K+RY ++IIM DAD+DG+HIRTLLLTFFFR M  LI  G ++I  PPLY I+
Sbjct: 482 GAS-FDISKIRYGRVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPPLYKIS 540

Query: 546 RGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             K    Y   +E  +  L      +         G ++ + L  
Sbjct: 541 FDKKNFTYAYSDEQRDKILSENKDRKYDIQRYKGLGEMNADQLWE 585



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 2/135 (1%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           +    +      F F      I    I      +  +  +             D I S  
Sbjct: 503 IDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPPLYKISFDKKNFTYAYSDEQRDKILSEN 562

Query: 731 R-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           + +   +QRYKGLGEMNA QLWETT+NP+TR + +V   DA +AD LFS LMGDEV+PRR
Sbjct: 563 KDRKYDIQRYKGLGEMNADQLWETTMNPETRLMYQVLTEDAEKADQLFSMLMGDEVKPRR 622

Query: 790 EFIQENSLPS-ALDI 803
           +FI+ N+     LD+
Sbjct: 623 DFIEANARYVKNLDV 637


>gi|323141431|ref|ZP_08076321.1| DNA gyrase, B subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322414087|gb|EFY04916.1| DNA gyrase, B subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 646

 Score =  618 bits (1595), Expect = e-174,   Method: Composition-based stats.
 Identities = 295/640 (46%), Positives = 409/640 (63%), Gaps = 11/640 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+A+ I +L+GL+AV+KRP+MYIG T    GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 14  KGNYNAEQIHVLEGLEAVRKRPAMYIGSTSS-RGLHHLVYEVVDNSIDEALAGYCSDIKV 72

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++ D S TV DNGRGIP D+ K+E   A EVIMT LHAGGKF    YKVSGGLHGVGV+
Sbjct: 73  IIHKDNSITVIDNGRGIPVDMMKKEQKPAVEVIMTVLHAGGKFGDGGYKVSGGLHGVGVT 132

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            VNALS  +++ ++R G  Y + F  G     L   G     TGT V F P + IF+  +
Sbjct: 133 CVNALSEHMEVEVRRGGKCYGIEFAKGKTSKKLYEKGDCE-TTGTTVHFKPDATIFTETE 191

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YDTL+ R+REL+FLN  + ISL D+R  E +  T  + GGI  +V ++D+ K  +   
Sbjct: 192 YSYDTLRLRIRELAFLNKGITISLTDER-AEDKSETFHFAGGIIEYVEFMDKDKDKINPK 250

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI ++G ++ + +++AM++ D Y EN+  + NNI  ++GGTHLSG R ALTR I +Y  K
Sbjct: 251 PIYLEGEKNAVIVEVAMQYCDTYSENIFTYVNNINTEEGGTHLSGFRKALTRTINAYARK 310

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K+++ ++ GDD REG T+VLS+K+ +P+F SQTK KL +SEV  +V++ V D L+ 
Sbjct: 311 TNMLKENEDALSGDDVREGLTAVLSLKVQNPQFESQTKIKLGNSEVMPIVDNLVGDTLAE 370

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           ++EE+P  AK +V+K + A+  R AAR+AR+LTRRK  +D+  LPGKLADC  R+ + +E
Sbjct: 371 FMEENPQVAKKLVEKAIVAARARLAARKARELTRRKNAMDLGGLPGKLADCKSRNVEDTE 430

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAKQGR+ + QAILPLRGKILNVE+AR DK+LSS+EI  +ITA G GIG
Sbjct: 431 IYLVEGDSAGGSAKQGRNSDFQAILPLRGKILNVEKARLDKVLSSEEIRNMITAFGCGIG 490

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D F++ K RY KIIIMTDADVDGAHIRTLLLTFF+R M  LI  G ++I +PPLY I +
Sbjct: 491 -DDFNLEKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMQPLIKEGHVFIAQPPLYLIRK 549

Query: 547 GKS-LQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +    Y   +E L++ L                 G ++   L         +D   +  
Sbjct: 550 NQKQHYYAYSDEELQEILDEVGRDANPYVQRYKGLGEMNPGQLWET-----TMDPAARTI 604

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              H +   E   I  +   +  +     +        N 
Sbjct: 605 LQVHLEDAAEADRIFSILMGDKVEPRRQFIEDNAKKVRNL 644



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V  + ++ N +          ++        ++      V    +    
Sbjct: 461 ILNVEKARLDKVLSSEEIRNMITAFGCGIGDDFNLEKARYGKIIIMTDADVDGAHIRTLL 520

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK--ITGPCSLLDTIFSIGRK-GISMQ 737
             F +      I    +       L LI    K          L + +  +GR     +Q
Sbjct: 521 LTFFYRYMQPLIKEGHVF-IAQPPLYLIRKNQKQHYYAYSDEELQEILDEVGRDANPYVQ 579

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN  QLWETT++P  R++L+V + DA++AD +FS LMGD+VEPRR+FI++N+ 
Sbjct: 580 RYKGLGEMNPGQLWETTMDPAARTILQVHLEDAAEADRIFSILMGDKVEPRRQFIEDNAK 639

Query: 798 PS-ALD 802
               LD
Sbjct: 640 KVRNLD 645


>gi|322370371|ref|ZP_08044930.1| DNA gyrase, B subunit [Haladaptatus paucihalophilus DX253]
 gi|320550079|gb|EFW91734.1| DNA gyrase, B subunit [Haladaptatus paucihalophilus DX253]
          Length = 638

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 288/592 (48%), Positives = 387/592 (65%), Gaps = 9/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD    + Y A  IQ+L+GL+AV+KRP+MYIG TD   GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MSDG---NEYSAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +++D+GRGIP D H+E  + A EVI+T LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDSIDVTIHEDNSVSIADDGRGIPVDRHEEYDMPALEVILTVLHAGGKFDNKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPS 178
           HGVG+SVVNALS    + +KR+G +++ +F  G     +          +TGT   F P 
Sbjct: 117 HGVGISVVNALSEKFDVEVKRDGGVWKQTFERGDPAGEMERVRDMRDDEETGTYQRFWPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++IF   DF Y TL++RLREL+FLNS V I+L D+R  E    T  Y GGI  FV YL+ 
Sbjct: 177 TEIFETTDFTYSTLENRLRELAFLNSGVAITLADERDEEK-GDTFHYSGGIREFVEYLNE 235

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  L    I  +   DNI +++AM+  D    ++  F NNI  ++GGTHL+G ++ALTR
Sbjct: 236 TKTALHNEVIYFEDEDDNIQVEVAMQATDELQGSIHAFANNINTREGGTHLTGFKTALTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y   +        ++ G+D REG T+V+S+K PDP+F  QTK KL +SEVR +VES
Sbjct: 296 VVNDYANDNDMLGDLDENLRGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVES 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V++GLS + EEHP  A+ I+ K ++A+  R AA++A +LTRRK  L+ ++LPGKLADC 
Sbjct: 356 AVHEGLSVYFEEHPDTAQAIISKAVEAAKARKAAKKAEELTRRKSALESSALPGKLADCQ 415

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP KSELF+VEGDSAGGSAKQ R RE QAILPL GK+LNVE+ R D++L +++I   I
Sbjct: 416 SRDPTKSELFVVEGDSAGGSAKQARDREFQAILPLFGKVLNVEKHRLDRVLENEKIRNFI 475

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+GTG+G++ FDI+  RYHKIIIMTDADVDGAHIRTL LT  +R M  L+  G++Y  +
Sbjct: 476 TAIGTGVGEE-FDIDDARYHKIIIMTDADVDGAHIRTLYLTLLYRYMRPLLEAGYVYAAQ 534

Query: 539 PPLYGITRGKSLQYVKD-EESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY +            EE  E        +          G ++   L  
Sbjct: 535 PPLYRVRYRGKTYDAMTEEERDEIIEEKCDGNPSQVQRFKGLGEMNPEQLWE 586



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QR+KGLGEMN  QLWETT+NP+ R L ++ I DA+ AD +FS LMGD V PR++FIQ+
Sbjct: 569 QVQRFKGLGEMNPEQLWETTMNPENRILKQITIEDAAAADKMFSVLMGDAVGPRKQFIQD 628

Query: 795 NSLPSA-LDI 803
           ++  +  +DI
Sbjct: 629 HATEAEWVDI 638


>gi|237716665|ref|ZP_04547146.1| subunit B [Bacteroides sp. D1]
 gi|237720397|ref|ZP_04550878.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4]
 gi|262405441|ref|ZP_06081991.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22]
 gi|294646223|ref|ZP_06723877.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a]
 gi|298480563|ref|ZP_06998760.1| DNA gyrase, B subunit [Bacteroides sp. D22]
 gi|229442648|gb|EEO48439.1| subunit B [Bacteroides sp. D1]
 gi|229450148|gb|EEO55939.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4]
 gi|262356316|gb|EEZ05406.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22]
 gi|292638441|gb|EFF56805.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a]
 gi|295086258|emb|CBK67781.1| DNA gyrase subunit B [Bacteroides xylanisolvens XB1A]
 gi|298273384|gb|EFI14948.1| DNA gyrase, B subunit [Bacteroides sp. D22]
          Length = 652

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 290/603 (48%), Positives = 388/603 (64%), Gaps = 16/603 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
              IF+   ++Y  L  RLREL++LN+ ++ISL D+R        +    + + G+  FV
Sbjct: 179 DGTIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKSEQFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   +  I I++A+ +N G+ ENV  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPGK
Sbjct: 359 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS++DP K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S E
Sbjct: 419 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478

Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  + TALG  IG D         KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I
Sbjct: 479 IRNIYTALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVI 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586
            NG+LYI  PPLY   +GK  +Y   +   + ++       E  +        G ++   
Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598

Query: 587 LRN 589
           L  
Sbjct: 599 LWE 601



 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+
Sbjct: 586 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 645

Query: 797 LPSALD 802
             + +D
Sbjct: 646 TYANID 651


>gi|194335198|ref|YP_002016992.1| DNA gyrase, B subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307675|gb|ACF42375.1| DNA gyrase, B subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 649

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 286/588 (48%), Positives = 401/588 (68%), Gaps = 10/588 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SY A +IQ+L G++ V+ RP+MYIGD     GLHH++YE++DN+IDE+L G+ D I V
Sbjct: 15  EASYGATNIQVLDGIEHVRMRPAMYIGDI-YSRGLHHLVYEIVDNSIDETLGGFNDYIFV 73

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           +LN DGS TV D+GRGIP D+H E+  SA E++MT + AGGKF++ +YKVSGGLHGVG S
Sbjct: 74  SLNPDGSVTVIDHGRGIPVDIHPEKQKSALELVMTVIGAGGKFDKGAYKVSGGLHGVGAS 133

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W ++ + R+G +Y   F  G+    + V G + +  GT+ TFLP   IF   +
Sbjct: 134 VVNALSEWCEVEVSRDGKLYFQRFERGVPQGDVKVIG-SSDHRGTKTTFLPDHLIFKTTE 192

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
              D +  R+REL+FLN  + I++   +  E  +    Y+GGI+ FV + D+++  L++ 
Sbjct: 193 LRKDIIIDRMRELAFLNKELSITV---QDTEGFQEIFHYEGGIKEFVQFTDQNRLNLLKE 249

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI + G RD+  +++A+++ND Y ENV  + NNI   +GGTH++G R ALTR + +Y +K
Sbjct: 250 PIYLYGERDSTIVEIALQYNDTYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAYAQK 309

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K  K S+ GDD +EG T+V+S+K+ +P+F  QTK KL +SE +S+VE+ +N+ LS 
Sbjct: 310 NDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETVINEQLSE 369

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + E +P   K+I++KV  A+M R+AARRA++LTRRK VL+ + LPGKLADCS  DP+  E
Sbjct: 370 FAESNPNVLKMIIEKVKGAAMSREAARRAKELTRRKSVLESSGLPGKLADCSINDPEHCE 429

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  KML ++EI T+I ALGT  G
Sbjct: 430 LYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSFG 489

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           ++ F + KLRY KIIIMTDADVDGAHIRTLLLTFFFR M +LI  G ++I +PPLY +  
Sbjct: 490 EEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRALIEAGRVFIAQPPLYLVKS 549

Query: 547 GKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589
           GK  QY  D+E           + +  +          G ++   L +
Sbjct: 550 GKDQQYAWDDEERNSISDGMKKMQKGKANIHIQRYKGLGEMNPEQLWS 597



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E+ +         ++      V    +      F F      I + R+       L L+
Sbjct: 489 GEEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRALIEAGRVF-IAQPPLYLV 547

Query: 709 CNGDKIKI-------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
            +G   +              +      G+  I +QRYKGLGEMN  QLW TT++P  RS
Sbjct: 548 KSGKDQQYAWDDEERNSISDGMKK-MQKGKANIHIQRYKGLGEMNPEQLWSTTMDPAHRS 606

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LL V + +A +AD +FS LMGD+VEPRREFI++N+     LD+
Sbjct: 607 LLLVNVENAMEADQVFSTLMGDKVEPRREFIEKNARYVRRLDV 649


>gi|225011911|ref|ZP_03702349.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-2A]
 gi|225004414|gb|EEG42386.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-2A]
          Length = 646

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 275/601 (45%), Positives = 393/601 (65%), Gaps = 11/601 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  QN  Y  DSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MSEENQNKQYSEDSIQALEGMEHVRMRPSMYIGDI-GIRGLHHLVYEVVDNSIDEALGGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V +N D S T  DNGRGIP  +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDEISVVINEDNSITTKDNGRGIPVGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L   + R+G ++E ++  G    P+   G +  +TGT VTF P + 
Sbjct: 120 HGVGVSCVNALSERLTATVYRDGKVWEQTYERGKALAPVKSIGDSK-ETGTLVTFRPDAQ 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
           IF+    +NYDTL  R+REL++LN  ++IS+ D+R      E +  T   + G+  F+ +
Sbjct: 179 IFTQTREYNYDTLSLRMRELAYLNKGIKISITDRRETDDKGEFKSETFLSEKGLIEFIHF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD  ++ ++   I ++G ++ + +++AM +N  Y EN+  + NNI   +GGTHL+G R  
Sbjct: 239 LDESREAIIGDVISMEGEKNGVPVEVAMIYNTSYSENLHSYVNNINTHEGGTHLAGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTSTLKKYADSSGLLDKLKFEIAGDDFREGLTAIISVKVGEPQFEGQTKTKLGNREVTSA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L  +LEE+P +AKIIV+KV+ A+  R AA++AR++ +RK V+    LPGKL+
Sbjct: 359 VSQAVSEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMSGGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 419 DCSEQDPALCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIR 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTFFFR M  LI +
Sbjct: 479 NIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHISTLILTFFFRYMRELIES 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI  PPLY + +G+   Y   ++  +  +        ++ +     + ++      +
Sbjct: 539 GYIYIATPPLYLVKKGQKKDYAWSDDQRDLLMQEFGSGSSVQRYKGLGEMNAEQLWDTTM 598

Query: 592 D 592
           +
Sbjct: 599 N 599



 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/200 (32%), Positives = 92/200 (46%), Gaps = 7/200 (3%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +    +  A   EK  +        +
Sbjct: 454 LPLRGKILNVEKAMQHKVFENEEIRNIYTALGVTIGTEEDSKALNLEKLRYHK------V 507

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      V    +      F F    + I S  I       L L+  G K          
Sbjct: 508 VIMCDADVDGSHISTLILTFFFRYMRELIESGYIY-IATPPLYLVKKGQKKDYAWSDDQR 566

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D +      G S+QRYKGLGEMNA QLW+TT+NP  R+L +V I +  +AD +FS LMGD
Sbjct: 567 DLLMQEFGSGSSVQRYKGLGEMNAEQLWDTTMNPQERTLRKVTIDNGGEADRVFSMLMGD 626

Query: 784 EVEPRREFIQENSLPSALDI 803
           EV PRREFI++N++ + +D+
Sbjct: 627 EVPPRREFIEKNAIYANIDV 646


>gi|81251102|gb|ABB69898.1| DNA gyrase subunit B [Nitrosomonas sp. IWT310]
          Length = 554

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 339/549 (61%), Positives = 428/549 (77%), Gaps = 7/549 (1%)

Query: 2   SDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           + N ++S   YD++SI+ILKGLDAV+KRP MYIGDT   +GLHHM++EV+DNAIDE+L G
Sbjct: 9   TKNTESSQRDYDSNSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAG 68

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           Y D I+V ++ D S +V DNGRGIPTD+ +  E+  SAAE++MT LHAGGKF+  SYKVS
Sbjct: 69  YCDEISVIIHADNSISVQDNGRGIPTDIKQDDEQKRSAAEIVMTELHAGGKFDDNSYKVS 128

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL+L I R+GN++++ F +G+   PL VTG   +  GTEV FL 
Sbjct: 129 GGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHGTEVHFLA 187

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S  IF    ++YD    RLRELSFLN  ++I L+D+R  + RE T  + GGI  FV Y++
Sbjct: 188 SQVIFGNVTYHYDIFARRLRELSFLNYGIRIRLVDRR--DNREETFAFSGGIRNFVEYIN 245

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R K  L  S    +G +D+I++++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+T
Sbjct: 246 RTKTVLHPSIFYAKGMKDDITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMT 305

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+EK+  +KK K    GDD REG T VLSIK+ +P+FSSQTKEKLVSSEVR VVE
Sbjct: 306 RTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSSQTKEKLVSSEVRPVVE 365

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V+  LS ++ E+P EAKII  K+++A+  R+AAR+AR+LTRRKGVLD   LPGKLADC
Sbjct: 366 EVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRRKGVLDSMGLPGKLADC 425

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DPK  EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++SSQEI +L
Sbjct: 426 QEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLISSQEIVSL 485

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI  G +YI 
Sbjct: 486 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIA 545

Query: 538 KPPLYGITR 546
           +PPLY I  
Sbjct: 546 QPPLYKIKH 554


>gi|254456050|ref|ZP_05069479.1| DNA gyrase, B subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083052|gb|EDZ60478.1| DNA gyrase, B subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 686

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 313/638 (49%), Positives = 417/638 (65%), Gaps = 30/638 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              ++Y ADSI++LKGL+AV+KRP MYIGDTD  +GLHHM+YEV+DN+IDE+L G+   I
Sbjct: 2   TNKNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +N DG+ TV+D+GRGIP D+HK E  SAAEVIMT+LHAGGKF+  SYKVSGGLHGVG
Sbjct: 62  NVRINSDGTITVNDDGRGIPVDMHKGEKKSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+G  + + F NG    PL + G +  ++GT++TFLPS +IFS 
Sbjct: 122 VSVVNALSEKLKLEINRDGKKHFIEFKNGEAIAPLKIVGKSK-NSGTQITFLPSKEIFSS 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--------L 236
             F+ + L  R+REL+FLN  ++I   D    + +     + GG+  FV++         
Sbjct: 181 IKFSANILIKRMRELAFLNKGIKIIFTDASLKKEKVSEFKFDGGVLEFVNFLDEKREKLQ 240

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++   L + PI I+G +DNI ++ +++WN  Y E++  +TNNI QKDGGTHL G RSAL
Sbjct: 241 NKNGNDLFKKPIYIEGKKDNIELECSLKWNASYAEDIFPYTNNIFQKDGGTHLLGFRSAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y  +    KK+K ++ GDD +EG T VLS K+PDP+FSSQTK+KLVSSEVR +V
Sbjct: 301 TRVVNKYANEHNLLKKNKLAISGDDIKEGLTCVLSTKIPDPKFSSQTKDKLVSSEVRMIV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ VN+ LS W +++P  AKII+ KV+ A+M RD AR+AR+  RRKG L+++ LPGKLAD
Sbjct: 361 ETVVNEKLSIWFDQNPSVAKIILAKVIQAAMARDVARKARENVRRKGALELSGLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV---------------- 460
           C     + +ELF+VEGDSAGGSAKQGR+R NQA+LPLRGKILN                 
Sbjct: 421 CQIGKQEGTELFIVEGDSAGGSAKQGRNRANQAVLPLRGKILNTYVEDLSVKKNGNGDAS 480

Query: 461 ---ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
                    KM+SS EI TLI ALG        D+  LRY KIIIMTDADVDG+HIR LL
Sbjct: 481 EQQRTKALSKMISSNEIVTLINALGLDPKTQEIDLKDLRYGKIIIMTDADVDGSHIRALL 540

Query: 518 LTFF-FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LTFF  +    LI NG +Y+ +PPL+ I +G    Y+KDE  LE+Y++  S   +     
Sbjct: 541 LTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDELELENYIVKNSKELKKIKKG 600

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
            SK  I + +L     +  +   L +        T ++
Sbjct: 601 -SKEYIKELELEKSKMNIQRFKGLGEMNPEELWSTTLD 637



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 5/111 (4%)

Query: 697 IEENYLTILSLICNGDKIKI--TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETT 754
           I++       ++ N  ++K    G    +  +    +  +++QR+KGLGEMN  +LW TT
Sbjct: 577 IKDELELENYIVKNSKELKKIKKGSKEYIKELELE-KSKMNIQRFKGLGEMNPEELWSTT 635

Query: 755 LNPDTRSLLRVKI-TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L+P+ R+LL+V+   D  +   L   LMG++V  R++FI  N++    LDI
Sbjct: 636 LDPENRNLLQVQYSKDLKKDQSLIHTLMGNDVALRKDFIISNAINVQNLDI 686


>gi|302390804|ref|YP_003826624.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
 gi|302202881|gb|ADL11559.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
          Length = 639

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 290/587 (49%), Positives = 396/587 (67%), Gaps = 3/587 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   ++ YDAD IQ+L+GL+AV+KRP MY+G T G  GLHH++YEV+DN+IDE+L GY D
Sbjct: 4   NEFNHTKYDADQIQVLEGLEAVRKRPGMYVGGT-GARGLHHLVYEVVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +      TV D+GRGIP   H      A E++MT LHAGGKF+ + YKVSGGLHG
Sbjct: 63  NIEVIIEPGNVVTVIDDGRGIPISSHPNLNKPAVEIVMTVLHAGGKFDNEGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS WL++ + R+  IY   +  G+    L V G +   +GT + F P  +IF
Sbjct: 123 VGVSVVNALSEWLEVEVMRDNKIYHQRYEEGVPVKDLTVIGES-QASGTMIKFKPDLEIF 181

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              DF Y  L  RL+EL++LN  ++I + DKR  E +     Y GGI +FV  L+ +K P
Sbjct: 182 ESIDFEYKKLIKRLKELAYLNKGIKIEIKDKRRDEIKTDIFQYDGGIVSFVQELNENKDP 241

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + + PI  +   ++  I++A+++N+ Y +N+  F NNI   +GG HLSG +SALTR I  
Sbjct: 242 IHEEPIYFETEEEDNHIEVAIQYNETYVDNIFTFANNINTHEGGNHLSGFKSALTRTIND 301

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +    K+D  ++ GDD REG  +++++K+PDP+F  QTK KL +SEVR +V+S V++
Sbjct: 302 YARRHDYLKEDDSNLSGDDIREGIVAIVNVKLPDPQFEGQTKTKLANSEVRGIVDSVVSE 361

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +LEE P    IIV+K + A+  R AA++AR+LTRRK  L   +LPGKLADCS RDP
Sbjct: 362 NLDRFLEEDPEIGSIIVQKAIKAAEARKAAKKARELTRRKSALTSTALPGKLADCSSRDP 421

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           ++SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+AR +K+L++ EI +LITALG
Sbjct: 422 EESELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARLNKILNNNEIRSLITALG 481

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG++ FD+ + RY KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY
Sbjct: 482 TGIGKE-FDMEQARYKKIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEAGNIYIAQPPLY 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            + +G+   YV ++  LE+ L     S          G ++   L  
Sbjct: 541 KVNKGRKEYYVYNDRKLEELLNEIGRSGISIQRYKGLGEMNPKQLWE 587



 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++ + +  +     K +         ++      V    +    
Sbjct: 456 ILNVEKARLNKILNNNEIRSLITALGTGIGKEFDMEQARYKKIIIMTDADVDGAHIRTLL 515

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      + +  I      +  +     +  +     L + +  IGR GIS+QRYK
Sbjct: 516 LTFFYRYMRPLLEAGNIYIAQPPLYKVNKGRKEYYVYNDRKLEELLNEIGRSGISIQRYK 575

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT++P+ R+ L+V+I DA  ADD+F+ LMGD+V PRR+FIQ+++    
Sbjct: 576 GLGEMNPKQLWETTMDPENRTTLQVQIEDAVMADDIFTTLMGDKVAPRRKFIQKHAKEVK 635

Query: 800 ALDI 803
            +DI
Sbjct: 636 EIDI 639


>gi|169335585|ref|ZP_02862778.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258323|gb|EDS72289.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis DSM
           17244]
          Length = 636

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 293/589 (49%), Positives = 399/589 (67%), Gaps = 5/589 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   QNS+YDA  I++L+GL+AV+KRP MYIG T GE GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--QNSNYDASKIKVLEGLEAVRKRPGMYIGST-GEKGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+    + TV D+GRGIPT ++++   SA E+ +T LHAGGKF+  +YKVSGGL
Sbjct: 58  CKNIVVTIGEGDTITVEDDGRGIPTGMNEKYKKSAVEIALTMLHAGGKFDSGTYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L + + + G +YE  +  G     L V G     TGT V F P  +
Sbjct: 118 HGVGVSVVNALSEHLTVNVYQNGQVYEQKYERGKPITGLEVVGKTK-RTGTTVFFKPDGE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   FNYDTL+HR+REL+FLN  + I+L D R  + +E +  Y+GGI  FV Y +R K
Sbjct: 177 IFSELVFNYDTLKHRIRELAFLNKGLNITLKDTREGKDQEESFHYEGGIIEFVDYANRGK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I  +   D   +++AM+++  Y E++  F NNI   +GG H++G ++ALTR I
Sbjct: 237 EKLTPEVIYFEKESDVCMLEVAMQFSTSYSESIYSFANNINTVEGGMHVNGFKTALTRSI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y  K    K ++ ++ GDD REG   V+S+K+ DP F  QTK KL + EVR  V++ V
Sbjct: 297 NAYARKYNILKDNEENLSGDDIREGLCVVISVKLADPEFEGQTKTKLGNPEVRGYVDTTV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D +S++LEEHP  AKIIV+K L A   R AAR+A+DL RRK VL+  +LPGKLADC E+
Sbjct: 357 GDNISSYLEEHPPVAKIIVEKALTAQRARKAARKAKDLVRRKSVLESTALPGKLADCREK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP K E+++VEGDSAGGSAK GR+ + QAILPLRGKILNVE+AR D++L++  I ++ITA
Sbjct: 417 DPSKCEIYIVEGDSAGGSAKLGRNSKTQAILPLRGKILNVEKARLDRILNTDTIRSMITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGI  + F+I K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +PP
Sbjct: 477 FGTGI-SEEFNIEKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRGLIDAGYVYIAQPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY + + K + Y+  +E LE+ L      +         G ++   L +
Sbjct: 536 LYKLEKQKKVWYLYSDEQLEEKLQEIGRDKIGLQRYKGLGEMNGEQLWD 584



 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 12/201 (5%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + N ++ + +  +  + ++   N    +  K           +
Sbjct: 447 LPLRGKILNVEKARLDRILNTDTIRSMITAFGTGISEEFNIEKARYHK-----------I 495

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      V    +      F +      I +  +      +  L        +     L 
Sbjct: 496 VIMTDADVDGAHIRTLLLTFFYRYMRGLIDAGYVYIAQPPLYKLEKQKKVWYLYSDEQLE 555

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           + +  IGR  I +QRYKGLGEMN  QLW+TT+NP+ R+LL+V I DA+ AD++FS LMGD
Sbjct: 556 EKLQEIGRDKIGLQRYKGLGEMNGEQLWDTTMNPENRTLLQVSIDDAAYADEIFSILMGD 615

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +V+PR++FI EN+     LDI
Sbjct: 616 QVQPRKDFITENARKVQNLDI 636


>gi|260172424|ref|ZP_05758836.1| DNA gyrase subunit B [Bacteroides sp. D2]
 gi|315920720|ref|ZP_07916960.1| hypothetical protein BSGG_2130 [Bacteroides sp. D2]
 gi|313694595|gb|EFS31430.1| hypothetical protein BSGG_2130 [Bacteroides sp. D2]
          Length = 652

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 287/603 (47%), Positives = 389/603 (64%), Gaps = 16/603 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R+G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRDGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
            + IF+   ++Y  L  RLREL++LN+ ++I+L D+R        +    + + G+  FV
Sbjct: 179 DNTIFTETVYDYKILASRLRELAYLNAGLRITLTDRRVVNEDGSFKGEQFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   +  I I++A+ +N G+ ENV  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPGK
Sbjct: 359 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS++D  K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S E
Sbjct: 419 LADCSDKDATKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478

Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  + TALG  IG +         KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I
Sbjct: 479 IRNIYTALGVTIGTEEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586
            NG+LYI  PPLY   +GK  +Y   +   + ++       E  +        G ++   
Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAVHTQRYKGLGEMNAQQ 598

Query: 587 LRN 589
           L  
Sbjct: 599 LWE 601



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+
Sbjct: 586 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 645

Query: 797 LPSALD 802
             + +D
Sbjct: 646 TYANID 651


>gi|217076995|ref|YP_002334711.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B]
 gi|217036848|gb|ACJ75370.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B]
          Length = 627

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 284/582 (48%), Positives = 375/582 (64%), Gaps = 9/582 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A +I++LKGL+ V++RP MYIG T G++GLHH++YE++DN+IDESL+GY D I VT+
Sbjct: 2   DYSAQNIKVLKGLEPVRQRPGMYIGST-GKAGLHHLVYEIVDNSIDESLQGYCDTIKVTI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DGS  V DNGRGIP D+H E G SA EV+MT LHAGGKF++ SYKVSGGLHGVG SVV
Sbjct: 61  FKDGSVEVEDNGRGIPVDIHPETGKSALEVVMTTLHAGGKFSKDSYKVSGGLHGVGASVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL++ + R+G +Y   +  G     + + G      GT V F P   IFS  DF+
Sbjct: 121 NALSQWLEVEVHRDGKVYYQRYERGTPTCEVKIIGETE-KRGTTVRFKPDPLIFSTTDFD 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
            DT+  RLREL+FLN ++ I   D+R+   R  T  Y GGI+ FVS+L +  K L   P+
Sbjct: 180 TDTILMRLRELAFLNPNITIYFKDERNNTER--TFHYTGGIKEFVSHLSKGSKSLH-EPV 236

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  + I ++++ ++ D   E +  F NNI   DGGTH++G +SA TR +     K+ 
Sbjct: 237 YISGEYEKIKVEVSFQYTDSDFEKIYSFVNNIRTVDGGTHVTGFKSAFTRVVNELGRKTG 296

Query: 309 GSKKDKRSVIGDDCREGFTSVLSI-KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
                K S+ GDD REG  +V+S+     P F  QTK KL + EV+  V   V + L  +
Sbjct: 297 QL--KKDSLRGDDVREGMVAVISVLMSSTPEFEGQTKSKLGNEEVQEAVAKVVREKLLEF 354

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            E +    KII++K L+A   R+AA+ AR++ +RK V   +SLPGKLADC  +  ++SEL
Sbjct: 355 FETNENTLKIIIQKALEAKKAREAAKHAREMVKRKSVFGSSSLPGKLADCITKKLEESEL 414

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQ R R  QAILPLRGKILNVE++ + K+L ++++  +ITALG GIG 
Sbjct: 415 FIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSWLKLLKNEQVRDIITALGVGIG- 473

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FDI KLRY KIIIMTDADVDGAHIRTLLLT F+R M  LI  G +YI +PPLY +T G
Sbjct: 474 DDFDIKKLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMKELIEEGRIYIAQPPLYKLTVG 533

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           K   Y   +E LED+       +         G ++   L  
Sbjct: 534 KDHYYFYSDEELEDFKKTLEDKKYEIQRYKGLGEMNPEQLWE 575



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E    + +    ++ + +  +       +         ++      V    +    
Sbjct: 444 ILNVEKSSWLKLLKNEQVRDIITALGVGIGDDFDIKKLRYGKIIIMTDADVDGAHIRTLL 503

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               +    + I   RI      +  L    D         L D   ++  K   +QRYK
Sbjct: 504 LTLFYRYMKELIEEGRIYIAQPPLYKLTVGKDHYYFYSDEELEDFKKTLEDKKYEIQRYK 563

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT++P+TR LL+V I DA  AD+LF  LMG + E R+EFI  ++L   
Sbjct: 564 GLGEMNPEQLWETTMDPNTRKLLKVSIEDAETADELFEMLMGSDTESRKEFIFRHALSVK 623

Query: 800 ALDI 803
            +D+
Sbjct: 624 EIDV 627


>gi|153809174|ref|ZP_01961842.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185]
 gi|149128150|gb|EDM19370.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185]
          Length = 652

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 290/603 (48%), Positives = 390/603 (64%), Gaps = 16/603 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-IKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
              IF+   ++Y  L  RLREL++LN+ ++I+L D+R        +    + + G+  FV
Sbjct: 179 DDTIFTETVYDYKILASRLRELAYLNAGLRITLTDRRVVNEDGSFKSEQFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   +  I I++A+ +N G+ ENV  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + LS +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPGK
Sbjct: 359 GAVDQAVGEVLSYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS++DP K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S E
Sbjct: 419 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478

Query: 474 IGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  + TALG  IG +      +I KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I
Sbjct: 479 IRNIYTALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586
            NG+LYI  PPLY   +GK  +Y   +   + ++       E  +        G ++   
Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598

Query: 587 LRN 589
           L  
Sbjct: 599 LWE 601



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 103/275 (37%), Gaps = 14/275 (5%)

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            + +     +   + + +   K   S        +   + +       ++  +       
Sbjct: 386 KVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSAGGTAK 445

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                               +E+A+       +  + I  +L   +    +      EK 
Sbjct: 446 QGRN-RMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTEDDSKEANIEKL 504

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            +  I      +      V    +      F F    + I +  +       L L   G 
Sbjct: 505 RYHKI------IIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY-IATPPLYLCKKG- 556

Query: 713 KIKITGPCSL-----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           K++            +DT        I  QRYKGLGEMNA QLWETT++P+ R L +V I
Sbjct: 557 KVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTMDPENRMLKQVNI 616

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            +A++AD +FS LMG++V PRREFI+EN+  + +D
Sbjct: 617 DNAAEADYIFSMLMGEDVGPRREFIEENATYANID 651


>gi|91762418|ref|ZP_01264383.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718220|gb|EAS84870.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1002]
          Length = 685

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 313/609 (51%), Positives = 412/609 (67%), Gaps = 28/609 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             NS+Y ADSI++LKGL+AV+KRP MYIGDTD  +GLHHM+YEV+DN+IDE+L G+   I
Sbjct: 2   KNNSTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +N DG+ TV D+GRGIP D+HK E +SAAEVIMT+LHAGGKF+  SYKVSGGLHGVG
Sbjct: 62  DVKINSDGTITVRDDGRGIPVDMHKGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+GN Y + F +G    PL V G +  +TGT++TFLPS +IFS 
Sbjct: 122 VSVVNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSK-ETGTQITFLPSKEIFSS 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK--- 241
             F    +  R+REL+FLN  ++I++ D    + + I   + GG+  FV +LD  ++   
Sbjct: 181 IKFTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIVFKFDGGVLEFVDFLDEKREKLV 240

Query: 242 -----PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                 L + PI I+G +DNI I+ +++WN  Y E++  +TNNI QKDGGTHL G RSAL
Sbjct: 241 NKTGNDLFKKPIYIEGKKDNIEIECSLKWNASYGEDIYPYTNNIYQKDGGTHLLGFRSAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  +    KK+K ++ GDD +EG T V+S K+PDP+FSSQTK+KLVSSEVR +V
Sbjct: 301 TRVINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDKLVSSEVRMIV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES V++ LS W +++P  +KII+ KV+ A++ RD AR+AR+  RRKG L+++ LPGKLAD
Sbjct: 361 ESIVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALELSGLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV---------------- 460
           C     + +ELF+VEGDSAGGSAKQGR+R NQA+LPLRGKILN                 
Sbjct: 421 CQIGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIVLKKNSNRDGS 480

Query: 461 --ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
                   KM+SS E+ TLI ALG     +  D+  LRY KIIIMTDADVDG+HIR LLL
Sbjct: 481 EHRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLL 540

Query: 519 TFF-FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           TFF  +    LI NG +Y+ +PPL+ I +G    Y+KDE+ LEDY++  +   +      
Sbjct: 541 TFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNNKELQKIKKGT 600

Query: 578 SKGVISKND 586
            +   +  D
Sbjct: 601 KEFTKAYED 609



 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 23/167 (13%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK-IKITG 718
              ++      V    +      F     + ++  N         L  I  G K I I  
Sbjct: 519 YGKIIIMTDADVDGSHIRALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKD 578

Query: 719 PCSLLDTIFSIGR------KG--------------ISMQRYKGLGEMNASQLWETTLNPD 758
              L D I    +      KG              +S+QR+KGLGEMN  +LW TTL+P+
Sbjct: 579 EKELEDYILKNNKELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPE 638

Query: 759 TRSLLRVKI-TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           TR+LL+V+   D  +  DL   LMG++V  R++FI  N++    LDI
Sbjct: 639 TRNLLQVQYSKDIKKDQDLIHTLMGNDVALRKDFIVSNAINVQNLDI 685


>gi|124008106|ref|ZP_01692804.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134]
 gi|123986354|gb|EAY26167.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134]
          Length = 659

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 286/598 (47%), Positives = 401/598 (67%), Gaps = 14/598 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + +NS Y AD+I+ L+GL+AV+ RPSMYIGD  G  GLHH+I+EV+DN+IDE+L GY D 
Sbjct: 13  DAKNSEYSADNIRALEGLEAVRMRPSMYIGDV-GVRGLHHLIWEVVDNSIDEALAGYCDH 71

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           ITV +N D S TV+DNGRGIPT  + +   SA EV+MT LHAGGKF++ +Y+VSGGLHGV
Sbjct: 72  ITVEVNTDNSITVTDNGRGIPTGFNSQMQKSALEVVMTVLHAGGKFDKDTYQVSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVS VNALS+ L+  + REG I++  +  G     + V G + + TGT + F+P + IF+
Sbjct: 132 GVSCVNALSTLLRATVHREGKIFQQEYKQGDPQTEVEVIGES-DKTGTVIHFVPDATIFT 190

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRH 239
             ++ Y+T+  RLRELS+LN  ++++++D R      +        +GG+  FV YLD  
Sbjct: 191 AIEYKYETISQRLRELSYLNKGIRLTMVDHRVKGEDGKALTEDFLSEGGLTEFVRYLDET 250

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++  +  PI ++G +  + + +A  +N  Y ENV  + NNI   +GGTH+SG R ALTR 
Sbjct: 251 RQSFLPEPIYVEGEKSGVPVQVAFTYNHSYSENVYSYVNNINTIEGGTHISGFRRALTRT 310

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY +K    +K K  V GDD REG T+V+S+K+ +P+F  QTK KL +SEV  VV++ 
Sbjct: 311 LKSYADKEGMLEKAKVDVTGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVMGVVDNA 370

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++ LS +LEE+P +AK I++KV+ A+  R AAR+AR++ +RK VL  + LPGKLADCSE
Sbjct: 371 TSEALSKFLEENPKQAKSIIQKVILAAQARHAARKAREMVQRKNVLSGSGLPGKLADCSE 430

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP   EL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A+  K+  ++EI  +IT
Sbjct: 431 KDPGLCELYLVEGDSAGGSAKQGRDRNTQAILPLRGKILNVEKAQEYKIYDNEEIKNIIT 490

Query: 480 ALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           ALG   G+D      ++ KLRYHKIIIMTDADVDG+HIRTL+LTFFFR M  LI +G++Y
Sbjct: 491 ALGVTFGKDDDDKALNMEKLRYHKIIIMTDADVDGSHIRTLILTFFFRYMRDLIESGYVY 550

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE----IELFCDSKGVISKNDLRN 589
           I  PP Y + +GK   Y  +++  +  +   + + +            G ++   L  
Sbjct: 551 IALPPFYLVKKGKKELYAWNDDDRDVAIKELAGNGKPESVHVQRYKGLGEMNPEQLWE 608



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 25/200 (12%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E  QE  +    ++ N +  +      +  +K+ +        ++      V    
Sbjct: 468 ILNVEKAQEYKIYDNEEIKNIITALGVTFGKDDDDKALNMEKLRYHKIIIMTDADVDGSH 527

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT--------IF 727
           +      F F      I S  +    L    L+  G K        L           I 
Sbjct: 528 IRTLILTFFFRYMRDLIESGYVY-IALPPFYLVKKGKK-------ELYAWNDDDRDVAIK 579

Query: 728 SIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
            +   G    + +QRYKGLGEMN  QLWETT+NP+ RSL +V I  A+ AD LFS LMGD
Sbjct: 580 ELAGNGKPESVHVQRYKGLGEMNPEQLWETTMNPENRSLKQVTIESAAGADHLFSMLMGD 639

Query: 784 EVEPRREFIQENSLPSALDI 803
           +V PRREFI+EN+  + +DI
Sbjct: 640 DVPPRREFIEENAKYANVDI 659


>gi|71083152|ref|YP_265871.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062265|gb|AAZ21268.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1062]
          Length = 685

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 311/609 (51%), Positives = 411/609 (67%), Gaps = 28/609 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              ++Y ADSI++LKGL+AV+KRP MYIGDTD  +GLHHM+YEV+DN+IDE+L G+   I
Sbjct: 2   NNKNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +N DG+ TV D+GRGIP D+HK E +SAAEVIMT+LHAGGKF+  SYKVSGGLHGVG
Sbjct: 62  DVKINSDGTITVRDDGRGIPVDMHKGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+GN Y + F +G    PL V G +  +TGT++TFLPS +IFS 
Sbjct: 122 VSVVNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSK-ETGTQITFLPSKEIFSS 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK--- 241
             F    +  R+REL+FLN  ++I++ D    + + I   + GG+  FV +LD  ++   
Sbjct: 181 IKFTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIVFKFDGGVLEFVDFLDEKREKLV 240

Query: 242 -----PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                 L + PI I+G +DNI I+ +++WN  Y E++  +TNNI QKDGGTHL G RSAL
Sbjct: 241 NKTGNDLFKKPIYIEGKKDNIEIECSLKWNASYGEDIYPYTNNIYQKDGGTHLLGFRSAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  +    KK+K ++ GDD +EG T V+S K+PDP+FSSQTK+KLVSSEVR +V
Sbjct: 301 TRVINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDKLVSSEVRMIV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES V++ LS W +++P  +KII+ KV+ A++ RD AR+AR+  RRKG L+++ LPGKLAD
Sbjct: 361 ESIVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALELSGLPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV---------------- 460
           C     + +ELF+VEGDSAGGSAKQGR+R NQA+LPLRGKILN                 
Sbjct: 421 CQIGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIVLKKNSNRDGS 480

Query: 461 --ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
                   KM+SS E+ TLI ALG     +  D+  LRY KIIIMTDADVDG+HIR LLL
Sbjct: 481 EHRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLL 540

Query: 519 TFF-FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           TFF  +    LI NG +Y+ +PPL+ I +G    Y+KDE+ LEDY++  +   +      
Sbjct: 541 TFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNNKELQKIKKGT 600

Query: 578 SKGVISKND 586
            +   +  D
Sbjct: 601 KEFTKAYED 609



 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 23/167 (13%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK-IKITG 718
              ++      V    +      F     + ++  N         L  I  G K I I  
Sbjct: 519 YGKIIIMTDADVDGSHIRALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKD 578

Query: 719 PCSLLDTIFSIGR------KG--------------ISMQRYKGLGEMNASQLWETTLNPD 758
              L D I    +      KG              +S+QR+KGLGEMN  +LW TTL+P+
Sbjct: 579 EKELEDYILKNNKELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPE 638

Query: 759 TRSLLRVKI-TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           TR+LL+V+   D  +  DL   LMG++V  R++FI  N++    LDI
Sbjct: 639 TRNLLQVQYSKDIKKDQDLIHTLMGNDVALRKDFIVSNAINVQNLDI 685


>gi|256826465|ref|YP_003150424.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641]
 gi|256582608|gb|ACU93742.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641]
          Length = 645

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 299/647 (46%), Positives = 397/647 (61%), Gaps = 17/647 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+DN + S YD   IQ+L+GL+ V+KRP MYIG T  E GLHH++YEV+DN++DE+L GY
Sbjct: 1   MADN-KPSHYDGKDIQVLEGLEPVRKRPGMYIGSTS-ERGLHHLVYEVVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V +  DGS  V DNGRGIP D H +E I   EV++T LHAGGKF  + YKVSGGL
Sbjct: 59  CTDIQVWICDDGSIKVQDNGRGIPVDKHPKEHIPTVEVVLTILHAGGKFGGEGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ +K+++ R+G  YE++F  G     L V G + + TGT V F P  +
Sbjct: 119 HGVGVSVVNALSTQMKVQVCRDGKRYEITFSRGKTVEKLHVVGDSKH-TGTTVRFWPDPE 177

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235
           IF+    FNY+TL  R RE++FLN  ++I+L D+R  +     +  T  ++ GI+ FV +
Sbjct: 178 IFTETTVFNYNTLAERFREMAFLNKGLKITLYDERELDGEGVAKHETFQFQDGIKDFVKF 237

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHLSGLRS 294
           L   K+ L   PI  +       +++AM+W   +  N V  F NNI   +GGTHL G + 
Sbjct: 238 LTTGKEVLNTKPIYFEAEGPAGEVEVAMQWTSSFSTNSVFSFANNINTIEGGTHLDGFKQ 297

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR I  Y  +    K+   ++ GDDCREG ++V+S+K+ DP+F  QTK KL +SE+R 
Sbjct: 298 AVTRTINDYAREKGILKEKDSNLTGDDCREGLSAVISVKLHDPQFEGQTKTKLGNSEMRQ 357

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +V S VN GL  +LEE+P  AK I+ K   A   R+AAR+AR++TRRK VLD  +LPGKL
Sbjct: 358 LVSSAVNQGLGEYLEENPTPAKRIINKASQALKAREAARKAREMTRRKNVLDSFALPGKL 417

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS ++    E+F+VEGDSAGGSAKQ R R+ QAILPLRGKILNVERA   + LSS  I
Sbjct: 418 ADCSSKNAADCEMFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTI 477

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +LITA+GT IG D FD  K RYH+IIIMTDADVDGAHI+ LLLTFF+R MP LI+ G++
Sbjct: 478 SSLITAVGTNIG-DDFDAEKARYHRIIIMTDADVDGAHIQILLLTFFYRYMPELINRGYI 536

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI  PPLYGI  GK             Y  N       +   D K  + +      +D  
Sbjct: 537 YIAMPPLYGIKEGKKKI-------RYVYNDNALAEAMKDYPTDKKPSVQRYKGLGEMDPD 589

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
              +  ++       +  IE A  +     E   +        +   
Sbjct: 590 QLWETTMEPETRILMQVGIEDAAAAERAVSELMGDQVEPRKEYIQKH 636



 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 22/242 (9%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
               +   D +  I + D         +  K             +E+A +    + ++  
Sbjct: 419 DCSSKNAADCEMFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTIS 478

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
            +  ++ + + +  +    +  +           ++      V    +     + +F  +
Sbjct: 479 SLITAVGTNIGDDFDAEKARYHR-----------IIIMTDADVDGAHI--QILLLTFFYR 525

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI------SMQRYKGL 742
           Y     NR                K KI    +  D   +   K        S+QRYKGL
Sbjct: 526 YMPELINRGYIYIAMPPLYGIKEGKKKIRYVYN--DNALAEAMKDYPTDKKPSVQRYKGL 583

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-L 801
           GEM+  QLWETT+ P+TR L++V I DA+ A+   S LMGD+VEPR+E+IQ+++     L
Sbjct: 584 GEMDPDQLWETTMEPETRILMQVGIEDAAAAERAVSELMGDQVEPRKEYIQKHAKDVRFL 643

Query: 802 DI 803
           DI
Sbjct: 644 DI 645


>gi|15643596|ref|NP_228642.1| DNA gyrase, subunit B [Thermotoga maritima MSB8]
 gi|6831559|sp|P77993|GYRB_THEMA RecName: Full=DNA gyrase subunit B; AltName: Full=Topoisomerase II
           subunit B
 gi|4981365|gb|AAD35915.1|AE001750_9 DNA gyrase, subunit B [Thermotoga maritima MSB8]
          Length = 636

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 277/589 (47%), Positives = 375/589 (63%), Gaps = 13/589 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A+SI++LKGL+ V+ RP MYIG T G+ GLHH++YEV+DN++DE+L GY D I VT
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYIGST-GKRGLHHLVYEVVDNSVDEALAGYCDWIRVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV
Sbjct: 61  LHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL++R+ R+G IY   +  G    P+ V G   +  GT V F P   IFS  +F
Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSETEF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           + D L+HRLRE++FL   ++I   D+ + E    T  + GGI  +V YL+R KK L    
Sbjct: 180 DPDILEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFDGGIVEYVKYLNRGKKALHDVI 237

Query: 248 IRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +  +       D + +++A ++ D Y E+++ F N I   DGGTH++  +S LTR +
Sbjct: 238 HIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLM 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K    K    S  G+D REG T+V+S+ + +P F  QTK KL + EV+  V   +
Sbjct: 298 NEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L    + +P   K I+ K++     R+AA+RAR++ RRK VL   +LPGKLADCS  
Sbjct: 357 REELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSST 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
             +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILNVE++  D++L +++I  +I A
Sbjct: 417 HREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG D FD +KLRY +IIIMTDAD+DGAHIRTLLLT F+R M  LI  G +YI  PP
Sbjct: 477 VGTGIG-DDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I  G+   YV  ++ L +Y                 G ++   L  
Sbjct: 536 LYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYKGLGEMNPEQLWE 584



 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++++ +  +       +  S      ++      +    +    
Sbjct: 453 ILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               +      I   R+      +  +    ++  +     L +    +  K I +QRYK
Sbjct: 513 LTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYK 572

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT+NP+TR ++RV I DA +AD LF  LMG++   RREFI+ ++L   
Sbjct: 573 GLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHALKVK 632

Query: 800 ALDI 803
            LDI
Sbjct: 633 ELDI 636


>gi|1622792|gb|AAC44498.1| DNA topoisomerase II subunit B [Thermotoga maritima MSB8]
          Length = 636

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 277/589 (47%), Positives = 375/589 (63%), Gaps = 13/589 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A+SI++LKGL+ V+ RP MYIG T G+ GLHH++YEV+DN++DE+L GY D I VT
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYIGST-GKRGLHHLVYEVVDNSVDEALAGYCDWIRVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV
Sbjct: 61  LHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL++R+ R+G IY   +  G    P+ V G   +  GT V F P   IFS  +F
Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPMEVIGET-DKHGTIVRFKPDPLIFSETEF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           + D L+HRLRE++FL   ++I   D+ + E    T  + GGI  +V YL+R KK L    
Sbjct: 180 DPDILEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFDGGIVEYVKYLNRGKKALHDVI 237

Query: 248 IRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +  +       D + +++A ++ D Y E+++ F N I   DGGTH++  +S LTR +
Sbjct: 238 HIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLM 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K    K    S  G+D REG T+V+S+ + +P F  QTK KL + EV+  V   +
Sbjct: 298 NEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L    + +P   K I+ K++     R+AA+RAR++ RRK VL   +LPGKLADCS  
Sbjct: 357 REELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSST 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
             +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILNVE++  D++L +++I  +I A
Sbjct: 417 HREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG D FD +KLRY +IIIMTDAD+DGAHIRTLLLT F+R M  LI  G +YI  PP
Sbjct: 477 VGTGIG-DDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I  G+   YV  ++ L +Y                 G ++   L  
Sbjct: 536 LYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYKGLGEMNPEQLWE 584



 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++++ +  +       +  S      ++      +    +    
Sbjct: 453 ILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               +      I   R+      +  +    ++  +     L +    +  K I +QRYK
Sbjct: 513 LTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYK 572

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT+NP+TR ++RV I DA +AD LF  LMG++   RREFI+ ++L   
Sbjct: 573 GLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHALKVK 632

Query: 800 ALDI 803
            LDI
Sbjct: 633 ELDI 636


>gi|120437084|ref|YP_862770.1| DNA gyrase subunit B [Gramella forsetii KT0803]
 gi|117579234|emb|CAL67703.1| DNA gyrase subunit B [Gramella forsetii KT0803]
          Length = 646

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 278/606 (45%), Positives = 405/606 (66%), Gaps = 11/606 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +  +Y ADSIQ L+G++ V+ RPSMYIGDT G  GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSEEAKKHNYSADSIQALEGMEHVRMRPSMYIGDT-GVRGLHHLVYEVVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D S T  DNGRGIP DLHK+EG+SA +V+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDNIKVTINEDNSITTEDNGRGIPIDLHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L   + R+G +++  +  G    P+  TG     +GT VTF P   
Sbjct: 120 HGVGVSCVNALSEHLTAIVFRDGQVWQQEYELGKPLYPVKPTGETE-LSGTIVTFKPDPS 178

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISL----IDKRSPEPREITMFYKGGIEAFVSY 235
           IF+   ++NYDTL  R+REL++LN  ++ISL      + + E        + G++ F+ +
Sbjct: 179 IFTQTLEYNYDTLASRMRELAYLNKGIRISLTDKRNKEDNGEFVHDDFHSEEGLKEFIRF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD +++P++   I ++G +++I +++AM +N  + EN+  + NNI   +GGTHLSG R  
Sbjct: 239 LDGNREPIIGDVISMEGEKNDIPVEVAMVYNTSFSENLHSYVNNINTHEGGTHLSGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTTTLKKYADSSGLLDKVKFEITGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVTSA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L  +LEE+P +AK IV+KV+ A+  R+AA++AR++ +RK V+ +  LPGKL+
Sbjct: 359 VSQAVSEMLENYLEENPNDAKTIVQKVILAAQARNAAKKAREMVQRKTVMSVGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS++DP++ E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A   ++  ++EI 
Sbjct: 419 DCSDQDPEQCEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAMSHRVFDNEEIK 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LTFFFR M  LI N
Sbjct: 479 NIYTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHIETLILTFFFRYMKELIEN 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI  PPLY + +G+  +Y   E+  ++   + S   +I+ +     + ++      +
Sbjct: 539 GHIYIATPPLYLVKKGQKKRYAWSEKERDEIAESYSGGVQIQRYKGLGEMNAEQLWDTTM 598

Query: 592 DDALKI 597
           D   +I
Sbjct: 599 DPEFRI 604



 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 7/199 (3%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF+ E  + I  +L   +        E+  K+ + S      +
Sbjct: 454 LPLRGKILNVEKAMSHRVFDNEEIKNIYTALGVTIG------TEEDSKALNLSKLRYHKV 507

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      V    +      F F    + I +  I       L L+  G K +        
Sbjct: 508 VIMCDADVDGSHIETLILTFFFRYMKELIENGHIY-IATPPLYLVKKGQKKRYAWSEKER 566

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D I      G+ +QRYKGLGEMNA QLW+TT++P+ R L +V I +  +AD +FS LMGD
Sbjct: 567 DEIAESYSGGVQIQRYKGLGEMNAEQLWDTTMDPEFRILRQVNIDNGGEADRIFSMLMGD 626

Query: 784 EVEPRREFIQENSLPSALD 802
           EV PRREFI++N+  + +D
Sbjct: 627 EVPPRREFIEKNAKYANID 645


>gi|329964535|ref|ZP_08301589.1| DNA gyrase, B subunit [Bacteroides fluxus YIT 12057]
 gi|328524935|gb|EGF51987.1| DNA gyrase, B subunit [Bacteroides fluxus YIT 12057]
          Length = 657

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 284/607 (46%), Positives = 391/607 (64%), Gaps = 19/607 (3%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++  +    ++Y A +IQ+L+GL+AV+KRP+MYIGD   E+GLHH++YEV+DN+IDE++
Sbjct: 1   MTEEEKINGENNYSASNIQVLEGLEAVRKRPAMYIGDIS-ENGLHHLVYEVVDNSIDEAM 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFL 176
           GGLHGVGVS VNALS  +  ++ R G IY+  +  G     +   G+     +GT+ TF 
Sbjct: 120 GGLHGVGVSCVNALSKHMTTQVFRNGKIYQQEYECGKPLYAVKEVGTCDPGFSGTKQTFW 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAF 232
           P   IF+V ++ Y TLQ RLREL++LN  + I+L D RS +    P+      + G++ F
Sbjct: 180 PDDSIFTVSEYKYTTLQARLRELAYLNKGITITLTDLRSKDEEGNPQVEKFHSEEGVKEF 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +  PL    I +   +  + I+ A+ +N GY EN+  + NNI  K+GGTH  G 
Sbjct: 240 VRYLNSNNNPLFDDVIYLNTEKAGVPIECAIMYNTGYRENLHSYVNNINTKEGGTHEGGF 299

Query: 293 RSALTRQITSYVEK--SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           R+ALTR +  Y E   +   +K K  + G+D REG  +V+S+K+ +P+F  QTK KL +S
Sbjct: 300 RAALTRVLKKYGEDTCAKQLEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNS 359

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV   V   V + LS +LEEHP EAK+IV+KV+ A+  R AAR+AR+  +RK  +    +
Sbjct: 360 EVSGAVNQAVGEALSYYLEEHPKEAKLIVEKVILAATARVAARKARESVQRKSPMSGGGM 419

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS +DP++ ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A + K   
Sbjct: 420 PGKLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFE 479

Query: 471 SQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           S E+  +I ALG   G         +I+KLRY K+IIMTDADVDG+HI TL++T FFR  
Sbjct: 480 SDEVNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYF 539

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVI 582
           P +I NG+LYI  PPLY  ++GK  +Y   ++  + ++       E  +        G +
Sbjct: 540 PQVIQNGYLYIATPPLYLCSKGKVKEYCWTDQQRQKFIDTYGGGSENAIHTQRYKGLGEM 599

Query: 583 SKNDLRN 589
           +   L  
Sbjct: 600 NPEQLWE 606



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 51/66 (77%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT+NP+ R L +V +  A++AD +FS LMG++V PRR+FI+ N+
Sbjct: 591 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLESAAEADYVFSMLMGEDVGPRRDFIEANA 650

Query: 797 LPSALD 802
             + +D
Sbjct: 651 TYANID 656


>gi|326335208|ref|ZP_08201404.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692616|gb|EGD34559.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 656

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 286/637 (44%), Positives = 409/637 (64%), Gaps = 23/637 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ +    Y AD+IQ L+G++ V+ RPSMYIGD  G  GLHH++YEVLDN+IDE+L GY
Sbjct: 1   MSEQLNQDKYSADNIQSLEGMEHVRVRPSMYIGDV-GMRGLHHLVYEVLDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V +N D S TV DNGRGIP D+HK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDTISVFINPDNSITVEDNGRGIPVDIHKKEGVSALEVVMTKIGAGGKFDKGSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ L   + R+G  ++  +  G+    +   G   N  GT+VTFLP ++
Sbjct: 120 HGVGVSVVNALSTHLTATVYRDGKEWQQEYERGVALYSVKEIGET-NKRGTKVTFLPDTE 178

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGIEAFVSY 235
           IF    +F+YD L  R+REL+FLN  ++I+L D R  + +        + + G+  F+ Y
Sbjct: 179 IFQQSIEFSYDILASRIRELAFLNKGIRITLTDLREKDDQGKPLSQEFYSEKGLVEFIQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD ++ P++   I ++G ++ I +++AM +ND ++EN+  + NNI   +GGTHL G R  
Sbjct: 239 LDGNRPPIISKIISMEGEKNEIPVEVAMVYNDSFNENLHSYVNNINTHEGGTHLQGFRMG 298

Query: 296 LTRQITSYVEKSFGSK------KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           LTR + +Y +KS   +      K+   + GDD REG T+++S+K+ +P+F  QTK KL +
Sbjct: 299 LTRTLKNYADKSGLLEKASKDKKNPLEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGN 358

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            EV + V   V++ L ++LEE+P +AK IV KV+ A+  R AA++AR+  +RK  +  A 
Sbjct: 359 REVTAAVSQAVSEMLESYLEENPEDAKTIVNKVILAAQARLAAKKAREAVQRKSPMGGAG 418

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC +++P+  ELFLVEGDSAGG+AKQGR ++ QAILPLRGKILNVE+A   ++L
Sbjct: 419 LPGKLADCQDKNPENCELFLVEGDSAGGTAKQGRDQKFQAILPLRGKILNVEKAMQHRVL 478

Query: 470 SSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            S+EI  + TALG  IG D      +++KLRY+KIIIM DADVDG+HI TL+LTFFFR M
Sbjct: 479 DSEEIRNIYTALGVTIGTDEDSKALNMSKLRYYKIIIMCDADVDGSHIATLILTFFFRYM 538

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
             LI  G +YI  PPLY + +GK  QY   +E  +          + ++       + + 
Sbjct: 539 RELIEEGHIYIATPPLYLLKQGKKEQYAWSDEERDAITNEFYSQAQAKVAVQRYKGLGE- 597

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                ++     D  +   +    K  IE AV +   
Sbjct: 598 -----MNATQLADTTMDPKHRTLRKVTIENAVEADRI 629



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 11/203 (5%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   V + E  + I  +L   +        ++  K+ + S      +
Sbjct: 460 LPLRGKILNVEKAMQHRVLDSEEIRNIYTALGVTIG------TDEDSKALNMSKLRYYKI 513

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F F    + I    I       L L+  G K +        
Sbjct: 514 IIMCDADVDGSHIATLILTFFFRYMRELIEEGHIY-IATPPLYLLKQGKKEQYAWSDEER 572

Query: 724 DTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           D I +      +  +++QRYKGLGEMNA+QL +TT++P  R+L +V I +A +AD +FS 
Sbjct: 573 DAITNEFYSQAQAKVAVQRYKGLGEMNATQLADTTMDPKHRTLRKVTIENAVEADRIFSM 632

Query: 780 LMGDEVEPRREFIQENSLPSALD 802
           LMGD+V PRREFI++N+  + +D
Sbjct: 633 LMGDDVPPRREFIEKNARYANID 655


>gi|225010581|ref|ZP_03701052.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-3C]
 gi|225005410|gb|EEG43361.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-3C]
          Length = 646

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/601 (45%), Positives = 400/601 (66%), Gaps = 11/601 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ ++  +Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MSEELEKKNYSADSIQALEGMEHVRMRPSMYIGDV-GTRGLHHLVYEVVDNSIDEAMGGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D IT+ +N D S +V+DNGRGIP  +HK+EG+SA +V+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDTITIDINEDNSISVTDNGRGIPVGMHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L+  +  +G I+E  +  G    P+   G   + +GT VTF P   
Sbjct: 120 HGVGVSCVNALSVKLQATVYVDGKIWEQEYERGKAVYPVRSIGET-DKSGTTVTFWPDPT 178

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSY 235
           IF+   +++Y+TL +R+RELS+LN  V++++ DKR  E          +   G++ F+ +
Sbjct: 179 IFTQTVEYSYETLSNRMRELSYLNKGVKLTITDKRQKEEDGSFVSEVFYSDEGLKEFIKF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD +++ L+++ I I+G ++ I +++AM +N  Y EN+  + NNI   +GGTHLSG R  
Sbjct: 239 LDGNREQLIKNVISIEGEKNGIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLSGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV + 
Sbjct: 299 LTTTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVSAA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L+ +LEE+P +AKIIV+KV+ A+  R AA +AR++ +RK V+ I  LPGKL+
Sbjct: 359 VSQAVSEMLANYLEENPDDAKIIVQKVVLAAQARHAANKAREMVQRKTVMSIGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   ++  ++EI 
Sbjct: 419 DCSEQDPSLCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHRVFDNEEIK 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LTFFFR M  LI  
Sbjct: 479 NIYTALGVSIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRELIDG 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI  PPLY + +G   +Y  +++  +      + S  I+ +     + ++      +
Sbjct: 539 GHVYIATPPLYLVKKGAKKRYAWNDKERDAIAEEFNGSVSIQRYKGLGEMNAEQLWDTTM 598

Query: 592 D 592
           +
Sbjct: 599 N 599



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 7/199 (3%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF+ E  + I  +L   +        E+  K+ +        +
Sbjct: 454 LPLRGKILNVEKAMQHRVFDNEEIKNIYTALGVSIG------TEEDSKALNLDKLRYHKV 507

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      V    +      F F    + I    +       L L+  G K +        
Sbjct: 508 VIMCDADVDGSHIETLILTFFFRYMRELIDGGHVY-IATPPLYLVKKGAKKRYAWNDKER 566

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D I       +S+QRYKGLGEMNA QLW+TT+NP+ R+L ++ I +A++ D  FS LMGD
Sbjct: 567 DAIAEEFNGSVSIQRYKGLGEMNAEQLWDTTMNPEFRTLRQITIDNATETDRTFSMLMGD 626

Query: 784 EVEPRREFIQENSLPSALD 802
           EV PR+EFI++N++ + +D
Sbjct: 627 EVPPRKEFIEKNAVYANID 645


>gi|255692967|ref|ZP_05416642.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565]
 gi|260621278|gb|EEX44149.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565]
          Length = 652

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 292/603 (48%), Positives = 393/603 (65%), Gaps = 16/603 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCTHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRGGKIYQQEYEIGKPLYSVKEVG-TSDITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
              IF+   ++Y  L  RLREL++LN+ ++ISL D+R        +    + + G+  FV
Sbjct: 179 DGSIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKSEQFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   +  I I++A+ +N G+ ENV  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + LS +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPGK
Sbjct: 359 GAVDQAVGEVLSYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS++DP K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S+E
Sbjct: 419 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESEE 478

Query: 474 IGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  + TALG  IG +      +I KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I
Sbjct: 479 IRNIYTALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKND 586
            NG+LYI  PPLY  T+GK  +Y   +  L++++       E           G ++   
Sbjct: 539 QNGYLYIATPPLYLCTKGKVKEYCWTDAQLQNFIDTYGGGSESAVHIQRYKGLGEMNAEQ 598

Query: 587 LRN 589
           L +
Sbjct: 599 LWS 601



 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 12/274 (4%)

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            + +     +   + + +   K   S        +   + +       ++  +       
Sbjct: 386 KVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSAGGTAK 445

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                               +E+A+       E  + I  +L   +    +      EK 
Sbjct: 446 QGRN-RMFQAILPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEDDSKEANIEKL 504

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            +  I      +      V    +      F F    + I +  +       L L   G 
Sbjct: 505 RYHKI------IIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY-IATPPLYLCTKGK 557

Query: 713 -KIKITGPCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            K        L + I + G      + +QRYKGLGEMNA QLW TT++P+ R L +V I 
Sbjct: 558 VKEYCWTDAQLQNFIDTYGGGSESAVHIQRYKGLGEMNAEQLWSTTMDPENRMLKQVNID 617

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +A++AD +FS LMG++V PRREFI+EN+  + +D
Sbjct: 618 NAAEADYIFSMLMGEDVGPRREFIEENATYANID 651


>gi|29348838|ref|NP_812341.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568817|ref|ZP_04846227.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298387912|ref|ZP_06997461.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
 gi|29340744|gb|AAO78535.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840836|gb|EES68917.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298259319|gb|EFI02194.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
          Length = 653

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 288/604 (47%), Positives = 389/604 (64%), Gaps = 17/604 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-IKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-VSDITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI-----DKRSPEPREITMFYKGGIEAF 232
              IF+   ++Y  L  RLREL++LN+ ++ISL      ++     +    + + G+  F
Sbjct: 179 DDTIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREF 238

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++  ++ L+   I +   +  I I++A+ +N G+ ENV  + NNI   +GGTHL+G 
Sbjct: 239 VRFIESSREHLINDVIYLNSEKQGIPIEIAIMYNTGFSENVHSYVNNINTIEGGTHLAGF 298

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV
Sbjct: 299 RRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPG
Sbjct: 359 MGAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS++DP K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S 
Sbjct: 419 KLADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESD 478

Query: 473 EIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           EI  + TALG  IG +      +I KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +
Sbjct: 479 EIRNIYTALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQI 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585
           I NG+LYI  PPLY   +GK  +Y   +   + ++       E  +        G ++  
Sbjct: 539 IQNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGLENAVHTQRYKGLGEMNAQ 598

Query: 586 DLRN 589
            L  
Sbjct: 599 QLWE 602



 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/66 (62%), Positives = 54/66 (81%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++PD R L +V I +A++AD +FS LMG++V PRREFI+EN+
Sbjct: 587 QRYKGLGEMNAQQLWETTMDPDNRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 646

Query: 797 LPSALD 802
             + +D
Sbjct: 647 TYANID 652


>gi|72388589|gb|AAZ67938.1| DNA gyrase subunit B [Psychrobacter arcticus]
          Length = 731

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 320/722 (44%), Positives = 441/722 (61%), Gaps = 49/722 (6%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           M++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H EEG+SAA+VIMT L
Sbjct: 7   MVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTVL 66

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  +  ++ +G+ D+ +    
Sbjct: 67  HAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHHHQTYTDGVPDSDIQQ-M 125

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            A + TGT++ F PS+D+F+   F YD L  RLRELSFLNS V+I L D+R  +  E   
Sbjct: 126 EATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--F 183

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            +KGG+  FVSY++  K  +      I    D IS+++A++W D Y+E V CFTNNIPQ+
Sbjct: 184 EHKGGLSEFVSYINAGKDGINDVFHFISNQEDGISVEVALQWTDTYNEKVFCFTNNIPQR 243

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHLSG RSALTR + +Y+++    KK+K    GDD REG T+++S+K+PDP+FSSQT
Sbjct: 244 DGGTHLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQT 303

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES ++D  + +L+E+P   K+I  K++DA+  RDAAR+AR++TRRK 
Sbjct: 304 KDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDAARARDAARKAREMTRRKT 363

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERA
Sbjct: 364 TLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERA 423

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           RFDKMLSSQE+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFR
Sbjct: 424 RFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFR 483

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           Q P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ ++             I+
Sbjct: 484 QTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTRLHISADAPAIT 543

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANR 641
              L   ++D  +   +       +    ++    +   + +   D++   +    L  +
Sbjct: 544 GQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDMTYDKDAMQAWKDTLQTQ 603

Query: 642 LNFIAE---------------------------------KSEKSWHGSINNSDI------ 662
           L                                      + E+          I      
Sbjct: 604 LEHFGSDSNPEIELVNIHAPQPKNMDAAAADLLGMKPVIEVEEGNSSEAEAPSIKAQWLP 663

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-----GDKIKIT 717
            +      +   ++L+ S I S         S            +           I + 
Sbjct: 664 RITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLDVDAFIRREATAGTSKDIPVR 723

Query: 718 GP 719
             
Sbjct: 724 DF 725


>gi|332521582|ref|ZP_08398035.1| DNA gyrase, B subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332042671|gb|EGI78871.1| DNA gyrase, B subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 649

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 289/604 (47%), Positives = 399/604 (66%), Gaps = 14/604 (2%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MSD  +     +Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L
Sbjct: 1   MSDKKEEFNKHNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+ D ITVT+N D S T  D+GRGIP DLHK+EGISA EV+MT++ AGGKF++ SYKVS
Sbjct: 60  AGHCDNITVTINEDNSITTEDDGRGIPVDLHKKEGISALEVVMTKIGAGGKFDKDSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS  L   + R G I+E  +  G    P+   G   +  GT VTF P
Sbjct: 120 GGLHGVGVSCVNALSEHLTATVYRNGKIWEQEYERGKSLYPVKAIGDT-DKRGTIVTFKP 178

Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAF 232
              IF+   ++NYDTL  R+REL++LN  + + LIDKRS +        T   + G++ F
Sbjct: 179 DPTIFTQTLEYNYDTLASRMRELAYLNKGITVHLIDKRSKKEDGSYEGETFHSEEGLKEF 238

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           + +LD  ++PLM+  I  +G ++ + +++AM +N  Y EN+  + NNI   +GGTHLSG 
Sbjct: 239 IKFLDATREPLMKDVISFEGEKNGVPVEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGF 298

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R  LT  +  Y ++S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV
Sbjct: 299 RRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVQEPQFEGQTKTKLGNREV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
            + V   V++ LS +LEE+P +AK IV+KV+ A+  R AA++AR++ +RK V+ I  LPG
Sbjct: 359 SAAVSQSVSEMLSDYLEENPEDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++
Sbjct: 419 KLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMTHKVFENE 478

Query: 473 EIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           EI  + TALG  IG +        +KLRYHKI+IM DAD+DG+HI TL+LTFFFR M  L
Sbjct: 479 EIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIETLILTFFFRYMKEL 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I NG +YI  PPLY I +G   QY  ++E  +  +     S +I+ +     + ++    
Sbjct: 539 IENGHIYIATPPLYLIKKGAKKQYAWNDEERKAIMQEFGESSKIQRYKGLGEMNAEQLWD 598

Query: 589 NFID 592
             ++
Sbjct: 599 TTMN 602



 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 7/199 (3%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +        E+  K+ + S      +
Sbjct: 457 LPLRGKILNVEKAMTHKVFENEEIKNIFTALGVTIG------TEEDSKALNLSKLRYHKI 510

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      +    +      F F    + I +  I       L LI  G K +        
Sbjct: 511 VIMCDADIDGSHIETLILTFFFRYMKELIENGHIY-IATPPLYLIKKGAKKQYAWNDEER 569

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
             I     +   +QRYKGLGEMNA QLW+TT+NP+ R+L ++ I +  +AD +FS LMGD
Sbjct: 570 KAIMQEFGESSKIQRYKGLGEMNAEQLWDTTMNPEFRTLRQIHIDNGVEADRVFSMLMGD 629

Query: 784 EVEPRREFIQENSLPSALD 802
           EV PRREFI++N++ + +D
Sbjct: 630 EVPPRREFIEKNAIYANID 648


>gi|89890612|ref|ZP_01202122.1| DNA gyrase subunit B [Flavobacteria bacterium BBFL7]
 gi|89517527|gb|EAS20184.1| DNA  gyrase subunit B [Flavobacteria bacterium BBFL7]
          Length = 646

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 281/622 (45%), Positives = 401/622 (64%), Gaps = 12/622 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    S Y AD IQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSEENNKSGYGADQIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + ITV +N D S TV+D+GRGIP  +HK+EG+SA +V+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CNNITVAINEDNSITVTDDGRGIPVGIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   +  GT+VTFLP   
Sbjct: 120 HGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKRGTDVTFLPDRS 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSY 235
           IF+    F+Y+TL +RLREL+FLN  +++ L DKR  +            + G++ F+ +
Sbjct: 179 IFTQTTEFSYETLANRLRELAFLNKGIKVILTDKRQKDEDGNFVTDVFQSEEGLKEFIRF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD  ++P++   I ++G ++ I +++AM +ND Y EN+  + NNI   +GGTHL+G R  
Sbjct: 239 LDDTRQPIIADVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLAGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVTSA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V+  L A+LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+    LPGKL+
Sbjct: 359 VSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSGGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE DP   E+FLVEGDSAGG+AKQGR RE QAI+PLRGKILNVE+A   K+  ++EI 
Sbjct: 419 DCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNVEKAMTHKVFENEEIR 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +         KLRYHK++IM DAD+DG+HI TL+LTFFFR M  +I  
Sbjct: 479 NIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADIDGSHIATLILTFFFRYMREMIEK 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI  PPLY + +G   +Y   ++  +D   +      I+ +     + +       +
Sbjct: 539 GYIYIATPPLYLVKKGAKKRYAWSDKERDDIADSFGGGVNIQRYKGLGEMNADQLWDTTM 598

Query: 592 D-DALKIDKLIKDFYPNHDKTF 612
           + +   + ++  D  P  D+ F
Sbjct: 599 NPEFRTLRQVTIDSLPEADRIF 620



 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 7/128 (5%)

Query: 679 GSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTIFSIGRKGI 734
            + I +F  +Y R     IE+ Y+      L L+  G K +        D I      G+
Sbjct: 521 ATLILTFFFRYMREM---IEKGYIYIATPPLYLVKKGAKKRYAWSDKERDDIADSFGGGV 577

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMNA QLW+TT+NP+ R+L +V I    +AD +FS LMGDEV PRREFI++
Sbjct: 578 NIQRYKGLGEMNADQLWDTTMNPEFRTLRQVTIDSLPEADRIFSMLMGDEVPPRREFIEK 637

Query: 795 NSLPSALD 802
           N++ + +D
Sbjct: 638 NAIYANID 645


>gi|257462460|ref|ZP_05626872.1| DNA gyrase subunit B [Fusobacterium sp. D12]
 gi|317060117|ref|ZP_07924602.1| DNA gyrase subunit B [Fusobacterium sp. D12]
 gi|313685793|gb|EFS22628.1| DNA gyrase subunit B [Fusobacterium sp. D12]
          Length = 638

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 271/586 (46%), Positives = 392/586 (66%), Gaps = 5/586 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A +I +L+GL+AV+KRP MYIG T    GLHH+++EV+DN++DE+L GY + ITV+
Sbjct: 2   NNYGAQNITVLEGLEAVRKRPGMYIGTTSA-RGLHHLVWEVVDNSVDEALAGYCNRITVS 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  D    V DNGRGIP D+H + G SA E+++T LHAGGKF   +YKVSGGLHGVG+SV
Sbjct: 61  ILPDNIIQVEDNGRGIPVDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGISV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS W ++++KREGN+Y   ++ G     + +     AG  TGT VTF P  +IF   
Sbjct: 121 VNALSEWTEVKVKREGNVYYQKYLRGKPIEDVKIISALEAGETTGTIVTFKPDIEIFETV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +  ++GGI  F+  + +  + L+ 
Sbjct: 181 IFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGGISDFLKEVTQENQTLLS 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I I+G  + + +D+A  +  G  E +  F NNI   +GG+H++G R+ LT+ I    +
Sbjct: 241 KQIHIEGQAEQVGVDIAFTYTTGQSEIIYSFVNNINTTEGGSHVTGFRTCLTKVINDIGK 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                K+    + G D REG  +++S+K+P P+F  QTK KL +SEV  +V + ++  L 
Sbjct: 301 SQGFLKEKDGKLQGGDIREGIVAIISVKVPQPQFEGQTKTKLGNSEVSGIVNTVLSTDLK 360

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P + K+I++K+L++   R+AA+RAR+   RK VL++ SLPGKLADCS + P++ 
Sbjct: 361 IFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLADCSSKKPEEC 420

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K L S EI  ++TA GT I
Sbjct: 421 EIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKALESDEIRAMVTAFGTNI 480

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++SFD+ KLRY KII+MTDADVDGAHIRTL+LTF +R M  LIHNG +YI +PPLY ++
Sbjct: 481 GEESFDLEKLRYGKIILMTDADVDGAHIRTLILTFLYRYMVDLIHNGNVYIAQPPLYKVS 540

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
            GKS++Y   +  L++ L       +          G ++   L  
Sbjct: 541 FGKSIRYAYTDSQLKEMLQGMEGENKKYTLQRYKGLGEMNPEQLWE 586



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 104/267 (38%), Gaps = 10/267 (3%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +             +      +             +   F+ +        K
Sbjct: 376 KILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAK 435

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN-FIAEKSEKSWHGSINNSD 661
                + +  +   +   + N E         + ++   +  F     E+S+        
Sbjct: 436 QGRDRYFQAIL--PLKGKILNVEKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYG 493

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKITGPC 720
            ++      V    +   + I +F  +Y   +  N         L  +  G  I+     
Sbjct: 494 KIILMTDADVDGAHI--RTLILTFLYRYMVDLIHNGNVYIAQPPLYKVSFGKSIRYAYTD 551

Query: 721 SLLDTIFS--IGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           S L  +     G  K  ++QRYKGLGEMN  QLWETT++P+ R LL+V I +A +AD LF
Sbjct: 552 SQLKEMLQGMEGENKKYTLQRYKGLGEMNPEQLWETTMDPEARLLLKVSIDNAREADMLF 611

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
            +LMGD+VEPRREFIQE++     +DI
Sbjct: 612 DKLMGDKVEPRREFIQEHAEYVKNIDI 638


>gi|213622636|ref|ZP_03375419.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 646

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 306/647 (47%), Positives = 422/647 (65%), Gaps = 11/647 (1%)

Query: 166 GNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       
Sbjct: 2   TDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFH 59

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+D
Sbjct: 60  YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 119

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK
Sbjct: 120 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 179

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG 
Sbjct: 180 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 239

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 240 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 299

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           FDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ
Sbjct: 300 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 359

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           MP ++  G +YI +PPLY + +GK  QY+KD+E+++ Y I+ +L             +S 
Sbjct: 360 MPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSG 419

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRL 642
             L   + +     K+I        K  +++ V           D++      + L   L
Sbjct: 420 EALEKLVSEYNATQKMIGRMERRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITEL 479

Query: 643 NFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           N   +     K +   +   N  + +V+    GV   + L+   +     +       ++
Sbjct: 480 NEKEQHGSQWKFDVHTNTEQNLFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKL 539

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNP 757
                    +     +  +T     L+ +    R+G+++QRYKGLGEMN  QLWETT++P
Sbjct: 540 RGLIEEDAFIERGERRQPVTSFEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDP 599

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           ++R +LRV + DA  AD LF+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 600 ESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 646


>gi|260655480|ref|ZP_05860968.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1]
 gi|260629928|gb|EEX48122.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1]
          Length = 640

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 279/649 (42%), Positives = 389/649 (59%), Gaps = 16/649 (2%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++      +SSY    I +L+GL+AV++RP MYIGDT    GLHH +YE++DN++DESL
Sbjct: 1   MTEVQTPQADSSYGESGIVVLEGLEAVRRRPGMYIGDT-TVRGLHHCVYEIVDNSVDESL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   ITVT+  D S +V+D+GRGIP ++H + G S  E ++T LHAGGKF+ +SYKVS
Sbjct: 60  AGYCGHITVTIGTDESVSVTDDGRGIPVEIHHQTGKSTVETVLTVLHAGGKFDNRSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL++ + R+G  Y   +  GI   PL  T  +    GT V FL 
Sbjct: 120 GGLHGVGVSVVNALSEWLEVTVWRDGYEYFQRYERGIPVAPLAKTLPST-RRGTRVRFLA 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            S IF    ++ +TL  R RE++FL   + I    +   E +  T   +GGI  FV YL+
Sbjct: 179 DSQIFDEVQYSAETLVSRFREMAFLIPGLTI--TVEDQREGKTWTFCEEGGIAEFVRYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R +  L   P+ + G RD +S+++A ++ D Y+E +  F N I   +GGTH++GLRSALT
Sbjct: 237 RDRVVLFPEPLVVSGERDGVSVEMAFQYTDDYNERLFSFANLIHTVEGGTHVAGLRSALT 296

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +     ++   ++   ++ G+D REG T V+S+K+ +P+F  QTK KL +  V+  V+
Sbjct: 297 RAVNEGARRAGALREKDENLSGEDLREGLTCVVSVKLSNPQFEGQTKTKLGNGTVKGSVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + DGL    +E     K IV K + A   R+AA++AR+L  RK  +   SLPGKLADC
Sbjct: 357 SVIYDGLLGHFDEDSSALKPIVDKAVKARQAREAAKKARELV-RKSAMSGLSLPGKLADC 415

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +  ++ E+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LSS+EI  +
Sbjct: 416 SSKKAEECEVYIVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKARLDKILSSKEIRVI 475

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALG GIG D FD++KLRYHKIIIMTDADVDGAHI TLLLTFFFR M  L+  G +Y+ 
Sbjct: 476 IQALGCGIG-DEFDLSKLRYHKIIIMTDADVDGAHISTLLLTFFFRHMKELVEEGHVYLA 534

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDAL 595
            PPLY +  GK + Y+  +  L   + +  +  +          G ++   L        
Sbjct: 535 VPPLYRVQSGKKVDYLYSDRQLRTLMDSYEVEGKSPAVQRYKGLGEMNPEQLWET----- 589

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +D   +          I       +   +  +     + +      N 
Sbjct: 590 TMDPATRLLKRIQVDDAIAADEYFSILMGDKVEPRRDFIQTHAHEVRNL 638



 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 45/86 (52%), Positives = 61/86 (70%), Gaps = 2/86 (2%)

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +L+D+    G K  ++QRYKGLGEMN  QLWETT++P TR L R+++ DA  AD+ FS
Sbjct: 556 LRTLMDSYEVEG-KSPAVQRYKGLGEMNPEQLWETTMDPATRLLKRIQVDDAIAADEYFS 614

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRR+FIQ ++     LD+
Sbjct: 615 ILMGDKVEPRRDFIQTHAHEVRNLDV 640


>gi|299147112|ref|ZP_07040179.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
 gi|298514997|gb|EFI38879.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
          Length = 652

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 288/603 (47%), Positives = 387/603 (64%), Gaps = 16/603 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I V +N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVIINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
            + IF+   ++Y  L  RLREL++LN+ ++ISL D+R        +    + + G+  FV
Sbjct: 179 DNTIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKGEQFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   +  I I++A+ +N G+ ENV  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVQEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPGK
Sbjct: 359 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS++D  K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S E
Sbjct: 419 LADCSDKDATKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478

Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  + TALG  IG D         KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I
Sbjct: 479 IRNIYTALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586
            NG+LYI  PPLY   +GK  +Y   +   + ++       E  +        G ++   
Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598

Query: 587 LRN 589
           L  
Sbjct: 599 LWE 601



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+
Sbjct: 586 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 645

Query: 797 LPSALD 802
             + +D
Sbjct: 646 TYANID 651


>gi|317126747|ref|YP_004093029.1| DNA gyrase subunit beta [Bacillus cellulosilyticus DSM 2522]
 gi|315471695|gb|ADU28298.1| DNA gyrase, B subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 640

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 297/588 (50%), Positives = 415/588 (70%), Gaps = 6/588 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            ++  SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE++ GY D 
Sbjct: 5   TMEQQSYDESQIQVLEGLEAVRKRPGMYIGSTS-GRGLHHLVWEIVDNSIDEAMAGYCDT 63

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           ITVT+  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 64  ITVTIEEDNSITVEDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGV 123

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L++ +  +G ++   F  G+    L V G   + TGT + F P ++IF+
Sbjct: 124 GASVVNALSTKLEVEVHLDGKVHYQMFERGVPSADLKVIGET-DKTGTIIKFKPDNEIFT 182

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               ++YDTL +RLREL+FLN  ++I + DKR+   +     Y+GGI +FV +L+R K+P
Sbjct: 183 ETTEYDYDTLANRLRELAFLNRGLRILISDKRNDGKKAEYF-YEGGISSFVEHLNRTKEP 241

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + + P+ I+  +D IS+++AM++ND +  N+  F NNI   +GGTH SG ++ALTR I  
Sbjct: 242 IHEPPVFIESEKDGISVEIAMQYNDSFASNLYSFANNINTHEGGTHESGFKTALTRVIND 301

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K+   K+   ++IGDD REG T+++S+K+PDP+F  QTK KL +SE R++ +S  ++
Sbjct: 302 YARKNSLFKETDPNLIGDDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFSE 361

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            ++ ++ E+P  A+ IV+K + AS  RDAA++AR+LTRRK  L+++SLPGKLADCS +D 
Sbjct: 362 HMAKYMAENPNVARKIVEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCSSKDA 421

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+LS+ E+  +ITALG
Sbjct: 422 TISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKSRLDKILSNNEVRAIITALG 481

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG D FDI+K RYHKIIIMTDADVDGAHIRTLLLTFF+R M  L+  G++YI +PPL+
Sbjct: 482 TGIGGD-FDISKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEEGYVYIAQPPLF 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            I +GK++QY  +E+ +E  +   + + +         G ++   L  
Sbjct: 541 KIQQGKTVQYAYNEKEMERIIKELAETPKPGLQRYKGLGEMNPTQLWE 588



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/334 (23%), Positives = 133/334 (39%), Gaps = 39/334 (11%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEE 557
           TD ++ G  +R  L      ++P     G           +     +      +Y+ +  
Sbjct: 312 TDPNLIGDDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFSEHMAKYMAENP 371

Query: 558 SLEDYLINQSLSEEIELFCDSKG--------VISKNDLRNFIDDALKIDKLIKDFYPNHD 609
           ++   ++ + +          K          +  + L   + D    D  I + Y    
Sbjct: 372 NVARKIVEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCSSKDATISELYIVEG 431

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDIL 663
            +    A      + ++   +   + +   +RL+ I   +E          G   + DI 
Sbjct: 432 DSAGGSAKQGRDRHFQAILPLRGKILNVEKSRLDKILSNNEVRAIITALGTGIGGDFDIS 491

Query: 664 VKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNRIEENY----LTILSLICNGDKI 714
             R  + +      ++G+ I +    F  +Y R     +EE Y       L  I  G  +
Sbjct: 492 KARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRPL---LEEGYVYIAQPPLFKIQQGKTV 548

Query: 715 KITGPCSLLDTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           +       ++ I        + G+  QRYKGLGEMN +QLWETT++P TR+ L+V + DA
Sbjct: 549 QYAYNEKEMERIIKELAETPKPGL--QRYKGLGEMNPTQLWETTMDPSTRTTLQVTLEDA 606

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             AD+ F  LMGD+VEPRREFIQ N+     LDI
Sbjct: 607 MVADETFETLMGDKVEPRREFIQANAQYVKNLDI 640


>gi|332798030|ref|YP_004459529.1| DNA gyrase subunit B [Tepidanaerobacter sp. Re1]
 gi|332695765|gb|AEE90222.1| DNA gyrase, B subunit [Tepidanaerobacter sp. Re1]
          Length = 635

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 299/586 (51%), Positives = 407/586 (69%), Gaps = 7/586 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + + YD + I++L+G++ V+ RP MYIG TD   GLHH++YEV+DN+IDE++ GY   I 
Sbjct: 3   KKNVYDENKIEVLEGIEHVRLRPGMYIGSTDS-RGLHHLVYEVVDNSIDEAMAGYCKNIK 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+N D S TV D+GRGIP  +  + G SA EV +T LHAGGKFN   YKVSGGLHGVGV
Sbjct: 62  VTINKDNSVTVEDDGRGIPVKIQPKVGKSALEVALTMLHAGGKFNSGGYKVSGGLHGVGV 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALSSW+++ +KR+G I+   +  G     ++  G    +TGT++TF+P ++IF   
Sbjct: 122 SVVNALSSWMEVEVKRDGGIFYQKYERGKPVTDVIRKGDTE-ETGTKITFMPDNEIFEDT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+ D L  RLRE +FLN  ++I L D+R+         Y+GGI +FV YL+R +  L +
Sbjct: 181 VFSQDILTQRLREQAFLNRGIRIELFDERTGNSN--VFHYEGGIVSFVKYLNRKRDVLHE 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI +  +RD++ +++AM++ND Y E VL F NNI   +GGTHLSG R+ALTR +  Y+ 
Sbjct: 239 KPIYMSAARDDMEVEVAMQYNDSYLETVLTFANNINTHEGGTHLSGFRTALTRSMNDYMR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL +SE+RS+V++ V +G+S
Sbjct: 299 KMNLLKEQDANLSGEDVREGLTAVISVKLTNPQFEGQTKTKLGNSEIRSLVDTVVGEGIS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P  A++IV+K L A+  R+AAR+AR+LTRRK  L+  +LPGKLADC ERDP+  
Sbjct: 359 RFLEENPAIARVIVEKALGAARAREAARKARELTRRKTALEHTTLPGKLADCRERDPRLC 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR  + QAILPLRGKILNVE+AR DK+L+++EI ++ITALGTGI
Sbjct: 419 ELYLVEGDSAGGSAKQGRDPQIQAILPLRGKILNVEKARMDKILNNEEIRSMITALGTGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ FDI KLRYHKII+M DADVDGAHIRTLLLTFF+R M  LI  G +YI +PPLY + 
Sbjct: 479 GEE-FDIEKLRYHKIILMADADVDGAHIRTLLLTFFYRYMQPLIEAGKIYIAQPPLYRVV 537

Query: 546 RGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRN 589
            GK   Y  D+  L      +  S            G ++   L  
Sbjct: 538 LGKKDYYAFDDLELSKILESLGNSRERAEIKRFKGLGEMAAEQLWE 583



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 14/203 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + N E  + +  +L + +    +    +  K           +
Sbjct: 444 LPLRGKILNVEKARMDKILNNEEIRSMITALGTGIGEEFDIEKLRYHK-----------I 492

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F +      I + +I      +  ++             L 
Sbjct: 493 ILMADADVDGAHIRTLLLTFFYRYMQPLIEAGKIYIAQPPLYRVVLGKKDYYAFDDLELS 552

Query: 724 DTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
             + S+G  R+   ++R+KGLGEM A QLWETT+NP+TR++L+V + DA  AD++F+ LM
Sbjct: 553 KILESLGNSRERAEIKRFKGLGEMAAEQLWETTMNPETRTILKVSLEDAVAADEIFTILM 612

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           GD+VEPRR+FI E++     LDI
Sbjct: 613 GDKVEPRRQFIFEHAAEVQNLDI 635


>gi|225619544|ref|YP_002720801.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1]
 gi|10644698|gb|AAG21374.1|AF288224_1 DNA Gyrase B subunit [Brachyspira hyodysenteriae]
 gi|225214363|gb|ACN83097.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1]
          Length = 636

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 278/585 (47%), Positives = 392/585 (67%), Gaps = 4/585 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
              +Y + +IQ+L+GLD V+KRP MYIG T G  GLHH++YEV+DN+IDE++ GY   IT
Sbjct: 3   AEKTYSSKNIQVLEGLDPVRKRPGMYIGST-GAQGLHHLVYEVVDNSIDEAMAGYCKNIT 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+       V D+GRGIP D+H +  ISA EV+MT+LHAGGKF+ ++YKVSGGLHGVGV
Sbjct: 62  VTIKKGNIIQVEDDGRGIPVDMHPKLKISALEVVMTKLHAGGKFDNETYKVSGGLHGVGV 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L   + ++G +Y   +  GI + P+   G     TGT VTF    +IF   
Sbjct: 122 SVVNALSTELIAEVNKDGKLYRQVYHRGIPEEPVKEVG-TSKKTGTTVTFKADDEIFETT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            ++Y  L +RLREL+FLN  ++I+L D+R  E      +Y+GGIE F+++L+ +KK L  
Sbjct: 181 VYDYKILANRLRELAFLNRGIRITLKDEREAEVVSNEFYYEGGIEMFITHLNENKKALHD 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI +  + D   +++AM++ D Y+EN+  + NNI   +GGTHL G R+ALTR  T + +
Sbjct: 241 KPIYLHKNEDKTDVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTALTRVYTDFAK 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    KK+K + +G+D REG  +V+S+K+P+P+F  QTK KL ++EVR+V E  V +GL+
Sbjct: 301 KLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAVTEKLVVEGLN 360

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +  ++P   K I++K++ A+  R+AAR+ARDL RRK  L+  SLPGKLADCSE++  K 
Sbjct: 361 DYFSQNPKVIKAILEKIISAAQAREAARKARDLARRKNALESDSLPGKLADCSEQEVDKC 420

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGG+AK GR R  QAILPLRGK+LNVE+AR DK++ ++ +  +I ALG G+
Sbjct: 421 EVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLKPIIAALGCGV 480

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G   FDI+K+RY ++IIM DAD+DG+HIRTLLLTFFFR M  LI  G ++I  PPLY I+
Sbjct: 481 GAS-FDISKIRYGRVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPPLYKIS 539

Query: 546 RGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             K    Y   +E  +  L      +         G ++ + L  
Sbjct: 540 FDKKNFLYAYSDEQRDKILAENKDRKYDIQRYKGLGEMNADQLWE 584



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 2/82 (2%)

Query: 724 DTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           D I +  + +   +QRYKGLGEMNA QLWETT+NP+TR + +V   DA +AD LFS LMG
Sbjct: 555 DKILAENKDRKYDIQRYKGLGEMNADQLWETTMNPETRLMYQVLTEDAEKADQLFSMLMG 614

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           DEV+PRR+FI+ N+     LD+
Sbjct: 615 DEVKPRRDFIESNARYVKNLDV 636


>gi|332292569|ref|YP_004431178.1| DNA gyrase, B subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170655|gb|AEE19910.1| DNA gyrase, B subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 647

 Score =  615 bits (1586), Expect = e-173,   Method: Composition-based stats.
 Identities = 286/598 (47%), Positives = 395/598 (66%), Gaps = 11/598 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD+ +   Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MSDDAKKKEYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N + S T  DNGRGIP  LHK+EG+SA +V+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDAIDVTINENNSITTRDNGRGIPVGLHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS+ L+  + +EG I+E  +  G    P+ V G   + TGTEVTFLP   
Sbjct: 120 HGVGVSCVNALSNHLRATVYKEGKIWEQEYERGKAMYPVKVIGDT-DFTGTEVTFLPDDS 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
           IF     ++YDTL  RLREL++LN  + I+L DKR      E    T   K G+  FV +
Sbjct: 179 IFQQTTEYSYDTLASRLRELAYLNKGITITLTDKRVKNEKGEHETETFHSKEGLSEFVRF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD ++ P++   I ++G ++ I +++AM +ND Y EN+  + NNI   +GGTHL+G R  
Sbjct: 239 LDGNRTPIIGEVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLAGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  + + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTGSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVTSA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V + +  ++EE+P +AKIIV+KV+ A+  R AA++AR++ +RK V+ I  LPGKL+
Sbjct: 359 VSQAVAEMIEIYMEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE DP   E+FLVEGDSAGG+AKQGR RE QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 419 DCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMSHKVFENEEIK 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LTFFFR M  L+ N
Sbjct: 479 NIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMKELVEN 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           G++YI  PPLY + +G+  QY  +++  +    +              G ++   L +
Sbjct: 539 GYVYIATPPLYLVKKGQKKQYAWNDKERDAIADSMGTQGVSIQRYKGLGEMNAEQLWD 596



 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 71/102 (69%), Gaps = 1/102 (0%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
             L L+  G K +        D I   +G +G+S+QRYKGLGEMNA QLW+TT+NP+ R+
Sbjct: 546 PPLYLVKKGQKKQYAWNDKERDAIADSMGTQGVSIQRYKGLGEMNAEQLWDTTMNPEFRT 605

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           L +V I + ++AD +FS LMGDEV PRREFI++N++ + +D+
Sbjct: 606 LRQVAIDNGTEADRIFSMLMGDEVPPRREFIEKNAIYANIDV 647


>gi|193215259|ref|YP_001996458.1| DNA gyrase subunit B [Chloroherpeton thalassium ATCC 35110]
 gi|193088736|gb|ACF14011.1| DNA gyrase, B subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 644

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 295/596 (49%), Positives = 415/596 (69%), Gaps = 11/596 (1%)

Query: 1   MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+ ++       Y A +IQ+L G++ V++RP+MYIGD  G  GLHH++YE++DN++DE+
Sbjct: 1   MSEEVKEIEKSLEYGASNIQVLDGIEHVRRRPAMYIGDV-GVRGLHHLVYEIVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L GY D I V +  +GS  V D GRGIPTD+H ++  SA +++MT + AGGKF++ +YKV
Sbjct: 60  LGGYNDYIFVQIKSNGSILVRDKGRGIPTDIHPQKNTSALQLVMTVIGAGGKFDKGAYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS W ++ + REG I+   +  GI   P+ V G+   + GT+ TFL
Sbjct: 120 SGGLHGVGASVVNALSEWCEVEVYREGKIFFQGYEKGIPKAPVSVIGTTS-ENGTKTTFL 178

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   IF  ++F YDTL  R+REL++LN ++ I + D+R  + R     +KGGI+ FV+++
Sbjct: 179 PDESIFKNREFRYDTLADRMRELAYLNKNLTIVIEDER--DGRRDEFHFKGGIQEFVTFM 236

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           D  +  L++ PI  +G +D   +++A ++ND Y EN   + NNI   +GGTH++G R AL
Sbjct: 237 DSTRLKLIKEPIYFEGEKDGTVVEIAFQYNDSYQENAFSYVNNINTHEGGTHVTGFRKAL 296

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y +K+   K  K S+ G+D REG T++LS+K+P+P+F  QTK KL +SE +S+V
Sbjct: 297 TRTLNYYGQKNDLFKNLKISLTGEDFREGLTAILSVKVPEPQFEGQTKTKLGNSETQSIV 356

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES VN+ L+ ++E+HP E KII++KV+ A++ RDAAR+A+DLTRRK  L+ +SLPGKLAD
Sbjct: 357 ESIVNEKLAEYIEQHPNEVKIILEKVVSAAIARDAARKAKDLTRRKSALESSSLPGKLAD 416

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  DP+  EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR +KML ++EI T
Sbjct: 417 CSINDPEHCELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARLNKMLENEEIRT 476

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI ALGT IG+D FD ++LRY KII+MTDADVDGAHIRTLLLTFFFR M  L+  G ++I
Sbjct: 477 LIMALGTSIGEDEFDASRLRYGKIILMTDADVDGAHIRTLLLTFFFRYMRGLVEGGRVFI 536

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI---ELFCDSKGVISKNDLRN 589
            +PPLY I  GK   Y  D++  +D L    +  +           G ++ + L +
Sbjct: 537 AQPPLYLIKSGKQQWYAWDDDERDDILKQFEVKGKENYGIQRYKGLGEMNADQLWS 592



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E  +  S      ++      V    +      F F      +   R+       L LI
Sbjct: 486 GEDEFDASRLRYGKIILMTDADVDGAHIRTLLLTFFFRYMRGLVEGGRVF-IAQPPLYLI 544

Query: 709 CNGDKIKITGPCSLLDTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
            +G +          D I       G++   +QRYKGLGEMNA QLW TT++P+ R+LL 
Sbjct: 545 KSGKQQWYAWDDDERDDILKQFEVKGKENYGIQRYKGLGEMNADQLWSTTMDPEKRTLLM 604

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           V I +A +AD +FS LMGD+VEPRR FI+ N+     LD+
Sbjct: 605 VTIENAMEADKIFSTLMGDQVEPRRAFIETNAKYVRRLDV 644


>gi|170287901|ref|YP_001738139.1| DNA gyrase, B subunit [Thermotoga sp. RQ2]
 gi|170175404|gb|ACB08456.1| DNA gyrase, B subunit [Thermotoga sp. RQ2]
          Length = 636

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 277/589 (47%), Positives = 374/589 (63%), Gaps = 13/589 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A+SI++LKGL+ V+ RP MYIG T G+ GLHH++YEV+DN++DE L GY D I VT
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYIGST-GKRGLHHLVYEVVDNSVDEVLAGYCDWIRVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV
Sbjct: 61  LHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL++R+ R+G IY   +  G    P+ V G   +  GT V F P   IFS  +F
Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSETEF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           + D L+HRLRE++FL   ++I   D+ + E    T  + GGI  +V YL+R KK L    
Sbjct: 180 DPDILEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFDGGIVEYVKYLNRGKKALHDVI 237

Query: 248 IRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +  +       D + +++A ++ D Y E+++ F N I   DGGTH++  +S LTR +
Sbjct: 238 HIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLM 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K    K    S  G+D REG T+V+S+ + +P F  QTK KL + EV+  V   +
Sbjct: 298 NEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L    + +P   K I+ K++     R+AA+RAR++ RRK VL   +LPGKLADCS  
Sbjct: 357 REELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSST 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
             +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILNVE++  D++L +++I  +I A
Sbjct: 417 HREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG D FD +KLRY +IIIMTDAD+DGAHIRTLLLT F+R M  LI  G +YI  PP
Sbjct: 477 VGTGIG-DDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I  G+   YV  ++ L +Y                 G ++   L  
Sbjct: 536 LYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYKGLGEMNPEQLWE 584



 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++++ +  +       +  S      ++      +    +    
Sbjct: 453 ILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               +      I   R+      +  +    ++  +     L +    +  K I +QRYK
Sbjct: 513 LTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYK 572

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT+NP+TR ++RV I DA +AD LF  LMG++   RREFI+ ++L   
Sbjct: 573 GLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHALKVK 632

Query: 800 ALDI 803
            LDI
Sbjct: 633 ELDI 636


>gi|319900374|ref|YP_004160102.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108]
 gi|319415405|gb|ADV42516.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108]
          Length = 657

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 279/607 (45%), Positives = 388/607 (63%), Gaps = 19/607 (3%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++  +    ++Y A +IQ+L+GL+AV+KRP+MYIGD   E+GLHH++YEV+DN+IDE++
Sbjct: 1   MTEEEKINGENNYSASNIQVLEGLEAVRKRPAMYIGDIS-ENGLHHLVYEVVDNSIDEAM 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDWHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFL 176
           GGLHGVGVS VNALS  +  ++ R G IY+  +  G     +   G      +GT+ TF 
Sbjct: 120 GGLHGVGVSCVNALSKHMTTQVFRNGKIYQQEYECGKPLYAVKEMGLCEPGLSGTKQTFW 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAF 232
           P   IF+V ++ + TLQ RLREL++LN  ++I+L D        +P       + G++ F
Sbjct: 180 PDDSIFTVSEYKHTTLQARLRELAYLNKGIRITLTDLRVKDEEGKPLTEYFHSEEGVKEF 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +  PL    I +   +  + I+ A+ +N GY EN+  + NNI  ++GGTH  G 
Sbjct: 240 VRYLNSNNTPLFDDVIYLNTEKSGVPIECAIMYNTGYRENLHSYVNNINTREGGTHEGGF 299

Query: 293 RSALTRQITSYVEKS--FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           R+ALTR +  Y + +     +K K  + G+D REG  +V+S+K+ +P+F  QTK KL ++
Sbjct: 300 RAALTRVLKKYADDNCSKALEKAKVEISGEDFREGLIAVISVKVSEPQFEGQTKTKLGNN 359

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV   V   V + LS +LEEHP EAK+IV KVL A+  R AAR+AR+  +RK  +    +
Sbjct: 360 EVSGAVNQAVGEALSNYLEEHPKEAKVIVDKVLLAATARVAARKARESVQRKSPMSGGGM 419

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS +DP++ ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A + K   
Sbjct: 420 PGKLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFE 479

Query: 471 SQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           S E+  +I ALG   G         +I+KLRY K+IIMTDADVDG+HI TL++T FFR  
Sbjct: 480 SDEVNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYF 539

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVI 582
           P +I NG+LYI  PPLY  ++GK  +Y   ++  + ++       E  +        G +
Sbjct: 540 PQVIQNGYLYIATPPLYLCSKGKVKEYCWTDQQRQKFIDAYGGGSENAIHTQRYKGLGEM 599

Query: 583 SKNDLRN 589
           + + L  
Sbjct: 600 NPDQLWE 606



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 52/66 (78%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT+NP+ R L +V + +A++AD +FS LMG++V PRR+FI+ N+
Sbjct: 591 QRYKGLGEMNPDQLWETTMNPENRMLKQVHLENAAEADYVFSMLMGEDVGPRRDFIESNA 650

Query: 797 LPSALD 802
             + +D
Sbjct: 651 TYANID 656


>gi|221195249|ref|ZP_03568305.1| DNA gyrase, B subunit [Atopobium rimae ATCC 49626]
 gi|221185152|gb|EEE17543.1| DNA gyrase, B subunit [Atopobium rimae ATCC 49626]
          Length = 649

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 283/601 (47%), Positives = 390/601 (64%), Gaps = 16/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   + S+Y +D I +L+GL+ V+KRP MYIG T    GLHH+++E++DN++DE+L G+
Sbjct: 1   MAKE-KKSNYSSDDITVLEGLEPVRKRPGMYIGTTSSA-GLHHLVWEIVDNSVDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V DNGRGIP D+H ++ I   EV++T LHAGGKF+  +YKVSGGL
Sbjct: 59  CTKIKVTVHADNSVSVEDNGRGIPVDIHPKKKIPTLEVVLTILHAGGKFDNSAYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  +   +KR+G IY+M F  G     +   G     TGT +TF P   
Sbjct: 119 HGVGVSVVNALSKRMIAEVKRDGKIYQMEFKRGKTTQKMKEIGKTK-STGTTITFWPDDT 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +N+DTL+ RL+E +FLN +++I L D+R   PR +   Y GGI  FV YL+  K
Sbjct: 178 IFETTTYNFDTLRDRLQETAFLNKNLKIVLTDERELIPRVVEYQYAGGIIDFVKYLNDEK 237

Query: 241 KPLM--QSPIRIQG-------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
             L     PI I+G       +     +++AM+WN  +++  L F N+I  ++GG HL G
Sbjct: 238 TVLTGLSKPIYIEGSSEPDAPTSQMGEVEVAMQWNTEFNDRTLSFANDIYTEEGGMHLEG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT+ +  Y  +    K+    + GDD REG T+V+S+K+PDP+F  QTK KL SS 
Sbjct: 298 FRTALTKAVNDYGTRQGILKEKDPKLTGDDIREGLTAVISVKLPDPQFEGQTKAKLGSSY 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +R++    V+ GL+ +LEEHP +AK I+KK   A+  R AAR+AR+ TRRKG+L+ ASLP
Sbjct: 358 MRTLTNKIVSSGLAEYLEEHPNQAKEILKKATQAAKGRLAARKAREATRRKGLLESASLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS +DP+ +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNVER +  + LSS
Sbjct: 418 GKLADCSVKDPEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQAHRALSS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
             I +LITA+GTG+G++ F++ K RYHKI+IMTDADVDG+HIR LLLTFF+R M  +I  
Sbjct: 478 DTITSLITAIGTGVGEE-FNLEKARYHKIVIMTDADVDGSHIRILLLTFFYRYMKPMIDA 536

Query: 532 GFLYIIKPPLYGITRGKSLQ---YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           G++Y+ +PPLY I             DEE   +    +  S+         G +    L 
Sbjct: 537 GYIYVAQPPLYQIKAKGKKHGKYIYTDEELAVEAKQFEDSSKYTVQRYKGLGEMDPEQLW 596

Query: 589 N 589
           +
Sbjct: 597 S 597



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  Q      +  + + +  I     + ++        +V      V    +    
Sbjct: 463 ILNVERVQAHRALSSDTITSLITAIGTGVGEEFNLEKARYHKIVIMTDADVDGSHIRILL 522

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI--KITGPCSLL--DTIFSIGRKGISM 736
             F +      I +  I      +  +   G K    I     L      F    K  ++
Sbjct: 523 LTFFYRYMKPMIDAGYIYVAQPPLYQIKAKGKKHGKYIYTDEELAVEAKQFEDSSK-YTV 581

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEM+  QLW TT+ P  R LL+V I DA  AD   + LMG++VE R++FIQ ++
Sbjct: 582 QRYKGLGEMDPEQLWSTTMEPKNRILLKVTIDDAMAADRAVADLMGNQVEKRKDFIQTHA 641

Query: 797 LPSA-LDI 803
                LDI
Sbjct: 642 KDVRFLDI 649


>gi|256419449|ref|YP_003120102.1| DNA gyrase, B subunit [Chitinophaga pinensis DSM 2588]
 gi|256034357|gb|ACU57901.1| DNA gyrase, B subunit [Chitinophaga pinensis DSM 2588]
          Length = 659

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 292/610 (47%), Positives = 405/610 (66%), Gaps = 23/610 (3%)

Query: 1   MSDNI------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+ +       +S YDA SIQ+L+GL+AV+KRP+MYIGD  G  GLHH++YEV+DN+ID
Sbjct: 1   MSEELVQAPTPASSGYDAGSIQVLEGLEAVRKRPAMYIGDI-GVKGLHHLVYEVVDNSID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L GY   I+VT+  D S  V+D+GRGIPT +H +EG SA EV+MT LHAGGKF++ +Y
Sbjct: 60  EALAGYCKNISVTICEDNSILVTDDGRGIPTGMHPKEGRSALEVVMTVLHAGGKFDKNTY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVS VNALS  L + ++REG ++E  +  G+    +   G   + TGT V 
Sbjct: 120 KVSGGLHGVGVSCVNALSDKLHVTVRREGKLFEQEYQRGVPQYAVREIG-TSDSTGTTVH 178

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIE 230
           F P ++IF    +N + L  RLREL++LN  ++I+L D R  +        T + +GGI 
Sbjct: 179 FKPDNEIFKETIYNREILAGRLRELAYLNRKIKITLTDDREKDEAGNSVTETFYSEGGII 238

Query: 231 AFVSYLDRH--KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            FV  LDR+  +  L+  PI I+      N+++++A+ +ND + EN+  + NNI   +GG
Sbjct: 239 EFVQMLDRNGRRNGLLPDPIFIEAHDASSNVAVEVAVIYNDSFSENIFSYVNNINTIEGG 298

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH++G R A+TR   SY +K+   +K K  V GDD REG ++++S+K+P+P+F  QTK K
Sbjct: 299 THVAGFRRAITRIFKSYGDKNKMFEKTKIEVTGDDFREGLSAIISVKVPEPQFEGQTKTK 358

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+V  VV+S V   L A+LEEHP EAKII+ KV+ A+  R+AAR+AR + +RK VL 
Sbjct: 359 LGNSDVMGVVDSSVAAVLDAYLEEHPREAKIIINKVVLAAQAREAARKARQMVQRKSVLS 418

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            + LPGKLADCSE DP+K EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A   
Sbjct: 419 GSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKILNVEKAMEH 478

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           K+  ++EI  + TALG  IG +  D     +KLRYHK+IIMTDADVDG+HI TL+LTF F
Sbjct: 479 KIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLILTFIF 538

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSK 579
           R M +++  G++YI +PPLY + + K   Y   EE  +  +   +  +E           
Sbjct: 539 RYMKAMVEQGYVYIAQPPLYLVKKSKEQIYAWTEEDRKAAIAKIAGGKEDSVTIQRYKGL 598

Query: 580 GVISKNDLRN 589
           G ++   L  
Sbjct: 599 GEMNAEQLWE 608



 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 12/192 (6%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E   E  +    ++ N    +      E+ +K+ + S      L+      V    
Sbjct: 469 ILNVEKAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSH 528

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-----LLDTIFSIG 730
           +   + I +F  +Y +    +           +    K +I           +  I    
Sbjct: 529 I--ATLILTFIFRYMKAMVEQGYVYIAQPPLYLVKKSKEQIYAWTEEDRKAAIAKIAGGK 586

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
              +++QRYKGLGEMNA QLWETT+NPD R+L +V I  A++AD +FS LMGDEV PRRE
Sbjct: 587 EDSVTIQRYKGLGEMNAEQLWETTMNPDNRTLKQVTIESAAEADRVFSMLMGDEVPPRRE 646

Query: 791 FIQENSLPSALD 802
           FI+ ++  + +D
Sbjct: 647 FIESHAKYAKID 658


>gi|293370455|ref|ZP_06617008.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f]
 gi|292634447|gb|EFF52983.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f]
          Length = 652

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 289/603 (47%), Positives = 387/603 (64%), Gaps = 16/603 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
             Y D I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  ASYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
              IF+   ++Y  L  RLREL++LN+ ++ISL D+R        +    + + G+  FV
Sbjct: 179 DGTIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKSEQFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   +  I I++A+ +N G+ ENV  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPGK
Sbjct: 359 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS++DP K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S E
Sbjct: 419 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478

Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  + TALG  IG D         KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I
Sbjct: 479 IRNIYTALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVI 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586
            NG+LYI  PPLY   +GK  +Y   +   + ++       E  +        G ++   
Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598

Query: 587 LRN 589
           L  
Sbjct: 599 LWE 601



 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+
Sbjct: 586 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 645

Query: 797 LPSALD 802
             + +D
Sbjct: 646 TYANID 651


>gi|312897423|ref|ZP_07756847.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359]
 gi|310621484|gb|EFQ05020.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359]
          Length = 647

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 306/646 (47%), Positives = 432/646 (66%), Gaps = 13/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +  SY AD IQ+L+GL+AV+KRP MYIG T    GLHH++YEV+DN+IDE+L GY
Sbjct: 11  MSEQ-KKVSYGADQIQVLEGLEAVRKRPGMYIGSTS-LKGLHHLVYEVVDNSIDEALAGY 68

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+  D S TV DNGRGIP  +HK  G  A EV++T LHAGGKF    Y +SGGL
Sbjct: 69  CTHIEVTIEEDNSITVVDNGRGIPVAMHKI-GKPAVEVVLTVLHAGGKFGGDGYPISGGL 127

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPS 178
           HGVG+SVVNALS   ++ +KR+G ++++SF  G+  N L        G + GT+V F P 
Sbjct: 128 HGVGISVVNALSEQTEIEVKRDGFLWKISFARGLTVNSLEKVRPLEEGEERGTKVWFKPD 187

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           S+IF    ++++TL+ RLREL+FLN  + I+L DKR+ +      +Y+GG+ +FV +L+ 
Sbjct: 188 SEIFPDTVYDFETLKIRLRELAFLNKGLTITLADKRTDKK--EIYYYEGGLTSFVQFLNE 245

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           ++ P+ Q+ I ++G + ++ +D+A+++NDGY EN+L F NNI  ++GGTHLSG RS LTR
Sbjct: 246 NRTPVNQTVISLEGIKSDVVVDIALQYNDGYSENILTFVNNIFTEEGGTHLSGFRSGLTR 305

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y   S   K+++ ++ G+D REG T+++S+K+ +P+F  QTK KL +SEV+ +V++
Sbjct: 306 TINDYGRSSGIIKENEDNLSGEDVREGLTAIISVKVREPQFEGQTKTKLGNSEVKGIVDN 365

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            ++DGL  + EEHP EAK IV K ++A+  R AAR+AR+LTRRK  L+I+SLPGKLADCS
Sbjct: 366 IISDGLKEFFEEHPAEAKSIVTKNINAARARQAARKARELTRRKNALEISSLPGKLADCS 425

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E++P  +E++LVEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+AR DK+L+++EI  +I
Sbjct: 426 EKNPDMTEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKIINVEKARLDKILANEEIRAMI 485

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG++ FDI K RY KIIIMTDADVDGAHIRTLLLTFF+R M  LI  G +YI +
Sbjct: 486 TAFGTGIGEE-FDITKRRYDKIIIMTDADVDGAHIRTLLLTFFYRFMKPLITEGHVYIAQ 544

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + +G+S+ Y+  ++ L + L        +       G ++   L         +D
Sbjct: 545 PPLYQVRKGRSVWYLYTDDELTNKLAEVGNENAVVQRYKGLGEMNPEQLWET-----TMD 599

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +       +  +E   I  V   +  +     +        N 
Sbjct: 600 PQFRTMLKVELEDAVEADRIFSVLMGDKVEPRRKFIQDNAKKVRNL 645



 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 3/184 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +        + +  +    D ++      V    +    
Sbjct: 464 IINVEKARLDKILANEEIRAMITAFGTGIGEEFDITKRRYDKIIIMTDADVDGAHIRTLL 523

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGISMQRY 739
             F +      I    +       L  +  G  +  +     L + +  +G +   +QRY
Sbjct: 524 LTFFYRFMKPLITEGHVY-IAQPPLYQVRKGRSVWYLYTDDELTNKLAEVGNENAVVQRY 582

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QLWETT++P  R++L+V++ DA +AD +FS LMGD+VEPRR+FIQ+N+   
Sbjct: 583 KGLGEMNPEQLWETTMDPQFRTMLKVELEDAVEADRIFSVLMGDKVEPRRKFIQDNAKKV 642

Query: 800 -ALD 802
             LD
Sbjct: 643 RNLD 646


>gi|257789784|ref|YP_003180390.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243]
 gi|317489247|ref|ZP_07947764.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA]
 gi|325832276|ref|ZP_08165275.1| DNA gyrase, B subunit [Eggerthella sp. HGA1]
 gi|257473681|gb|ACV54001.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243]
 gi|316911648|gb|EFV33240.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA]
 gi|325486112|gb|EGC88566.1| DNA gyrase, B subunit [Eggerthella sp. HGA1]
          Length = 648

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 293/648 (45%), Positives = 404/648 (62%), Gaps = 22/648 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YD   IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DNA+DE+L GY
Sbjct: 1   MANK--PDHYDGSDIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNAVDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S +V DNGRGIP D H +E I   EV++T LHAGGKF  + YKVSGGL
Sbjct: 58  CDEIKVWIHQDNSISVDDNGRGIPIDKHPKEKIPTVEVVLTILHAGGKFGGEGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS +++++++EG  Y + F +G     L   G      GT V+F P  +
Sbjct: 118 HGVGVSVVNALSSRVEVQVRKEGKEYFIGFDHGKTSEKLREVGPTKRGNGTTVSFWPDPE 177

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235
           IF+    +++DTL +R RE++FLN  ++I L D+R      +PR     Y GGI  FV +
Sbjct: 178 IFTETTVYDFDTLANRFREMAFLNKGLKIVLYDERVTDADGKPRTEVFQYAGGIVDFVKF 237

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHLSGLRS 294
           L+  K+ L   PI  +   D+ ++++AM+W+  Y  N V+ F NNI   +GGTHL G + 
Sbjct: 238 LNEGKETLN-KPIYFEAENDDGTVEVAMQWSTSYSTNSVMAFANNINTHEGGTHLDGFKQ 296

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR I  Y       K+   ++ GDD REG  +++S+K+ DP+F  QTK KL ++E+R 
Sbjct: 297 AVTRTINEYARSKGILKEKDSNLSGDDTREGCAAIVSVKLHDPQFEGQTKTKLGNTEIRP 356

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +V++ V  GL+ +LEE+P  AK I+ K   A   R+AAR+AR++TRRKGVLD  +LPGKL
Sbjct: 357 LVQNAVTQGLAEYLEENPTPAKRIIGKATQALKAREAARKAREMTRRKGVLDSFALPGKL 416

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS + P+ SELF+VEGDSAGGSAKQ R R+ QAILPLRGKILNVERA   + LSS  I
Sbjct: 417 ADCSSKTPENSELFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVERAGLHRSLSSDTI 476

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +LITA+GT IG D FD ++ RYH+IIIMTDADVDGAHIR LLLTFF+R MP LI+ G++
Sbjct: 477 SSLITAIGTNIG-DDFDADQSRYHRIIIMTDADVDGAHIRILLLTFFYRYMPELINRGYI 535

Query: 535 YIIKPPLYGITRGKS-----LQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLR 588
           YI +PP++G+ +  S      +Y+ DE SL   L      ++         G +  + L 
Sbjct: 536 YIAQPPIFGLKKKNSRSPKIERYIYDESSLGSVLAEYDDPNKFDVQRYKGLGEMDPDQLW 595

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                   ++   +           E   +      +  +     +  
Sbjct: 596 ET-----TMEPATRTLLQVSIDDAAEAERVVSDLMGDQVEPRKEFIQK 638



 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+ P TR+LL+V I DA++A+ + S LMGD+VEPR+EFIQ++
Sbjct: 580 VQRYKGLGEMDPDQLWETTMEPATRTLLQVSIDDAAEAERVVSDLMGDQVEPRKEFIQKH 639

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 640 ARDVRFLDI 648


>gi|307243405|ref|ZP_07525562.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306493215|gb|EFM65211.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 635

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 290/585 (49%), Positives = 395/585 (67%), Gaps = 2/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L G    I
Sbjct: 1   MTKHEYGADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGNCSEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            +++N DGS TV D+GRGIP ++H + G+S  E ++T LHAGGKF    YKVSGGLHGVG
Sbjct: 60  YISINPDGSVTVKDDGRGIPVEVHPKTGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS WL   + R+G +Y   +  G+    L V   +  D+GT +TF+P + IF  
Sbjct: 120 VSVVNALSDWLVAEVSRDGKVYRQEYKRGVPTGKLEVVSESSKDSGTSITFMPDASIFDE 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F Y+TL++R RELSFLN  ++I   DKR  +    T  Y GG+  ++ YL+R K P+ 
Sbjct: 180 IEFKYETLEYRFRELSFLNKVIKIEFEDKREGQEESKTFHYTGGLVEYIKYLNRTKTPIH 239

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I +    ++ +I+LA+++ D Y EN+  F NNI   +GG HLSG ++ALT+ +  Y 
Sbjct: 240 DQIIYVDKIANDCTIELALQYTDAYTENIYSFANNINTHEGGVHLSGFKAALTKCVNDYA 299

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            ++   K+   ++ G+D REG T+++S+K+PDP+F  QTK KL ++ +R +V+S  N+ +
Sbjct: 300 RRNNILKEKDPNLSGEDIREGLTAIVSVKLPDPQFEGQTKTKLGNTFMRGLVDSIANEEI 359

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
            A+LEE+P  AK++++K L A   R+AA++ARDLTRRK  L+  SLPGKLADCSE+ P+K
Sbjct: 360 GAFLEENPSVAKLVIEKCLRAQRAREAAKKARDLTRRKNALEFTSLPGKLADCSEKSPEK 419

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+FLVEGDSAGGSAK GR R  QAILPLRGKILNVE++R DK+LSS+EI  +ITA G G
Sbjct: 420 SEIFLVEGDSAGGSAKSGRDRNIQAILPLRGKILNVEKSRLDKILSSEEIKNMITAFGCG 479

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D F+  KLRYHKI+IMTDADVDGAHIRTLLLTFFFR M  LI  G++Y  +PPL+ +
Sbjct: 480 IGED-FEPEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRYMRPLIEGGYVYAAQPPLFKV 538

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +GK   Y   +  L   L                G ++   L  
Sbjct: 539 KKGKKEYYAFSDNELSSLLDEVGRQGADVSRYKGLGEMNAEQLWE 583



 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++ N +        + +         +V      V    +    
Sbjct: 452 ILNVEKSRLDKILSSEEIKNMITAFGCGIGEDFEPEKLRYHKIVIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I    +      +  +     +        L   +  +GR+G  + RYK
Sbjct: 512 LTFFFRYMRPLIEGGYVYAAQPPLFKVKKGKKEYYAFSDNELSSLLDEVGRQGADVSRYK 571

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLWETT++P++R+LL+V I DA  AD++FS LMGD+V PRR+FI+ N+    
Sbjct: 572 GLGEMNAEQLWETTMDPESRTLLQVTIDDAIMADEIFSMLMGDKVAPRRDFIEANAKYVT 631

Query: 800 ALDI 803
            LDI
Sbjct: 632 NLDI 635


>gi|148269239|ref|YP_001243699.1| DNA gyrase, B subunit [Thermotoga petrophila RKU-1]
 gi|147734783|gb|ABQ46123.1| DNA gyrase subunit B [Thermotoga petrophila RKU-1]
          Length = 636

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 275/589 (46%), Positives = 374/589 (63%), Gaps = 13/589 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A+SI++LKGL+ V+ RP MY+G T G+ GLHH++YEV+DN++DE+L GY D I VT
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYVGST-GKRGLHHLVYEVVDNSVDEALAGYCDWIRVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV
Sbjct: 61  LHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL++R+ R+G IY   +  G    P+ V G   +  GT V F P   IFS  +F
Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSETEF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           + D L+HRLRE++FL   ++I   D+ + E    T  + GGI  +V YL+R KK L    
Sbjct: 180 DPDVLEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFDGGIVEYVKYLNRGKKALHDVI 237

Query: 248 IRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +  +       D + +++A ++ D Y E+++ F N I   DGGTH++  +S LTR +
Sbjct: 238 HIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLM 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K    K    S  G+D REG T+V+S+ + +P F  QTK KL + EV+  V   +
Sbjct: 298 NEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L    + +    K I+ K++     R+AA+RAR++ RRK VL   +LPGKLADCS  
Sbjct: 357 REELKKIFDANSDLVKAILSKIMSTKQAREAAKRAREMVRRKNVLQNTALPGKLADCSST 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
             +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILNVE++  D++L +++I  +I A
Sbjct: 417 HREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG D FD +KLRY +IIIMTDAD+DGAHIRTLLLT F+R M  LI  G +YI  PP
Sbjct: 477 VGTGIG-DDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I  G+   YV  ++ L +Y                 G ++   L  
Sbjct: 536 LYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYKGLGEMNPEQLWE 584



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 96/262 (36%), Gaps = 3/262 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +             N   +  +           +     FI +        K
Sbjct: 377 KIMSTKQAREAAKRAREMVRRKNVLQNTALPGKLADCSSTHREKTELFIVEGDSAGGSAK 436

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +  +   +   + N E      +    ++++ +  +       +  S      
Sbjct: 437 QARDREFQAVL--PIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDESKLRYGR 494

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           ++      +    +        +      I   R+      +  +    ++  +     L
Sbjct: 495 IIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVYSDQEL 554

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
            +    +  K I +QRYKGLGEMN  QLWETT+NP+TR ++RV I DA +AD LF  LMG
Sbjct: 555 AEYKEKLQGKRIEIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMG 614

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           ++   RREFI+ ++L    LDI
Sbjct: 615 NDPSSRREFIERHALKVKELDI 636


>gi|145218835|ref|YP_001129544.1| DNA gyrase subunit B [Prosthecochloris vibrioformis DSM 265]
 gi|145204999|gb|ABP36042.1| DNA gyrase subunit B [Chlorobium phaeovibrioides DSM 265]
          Length = 642

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 284/584 (48%), Positives = 404/584 (69%), Gaps = 7/584 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A +IQ+L G+  V+ RP+MYIGD     GLHH+IYE++DN+IDE+L GY D I V+
Sbjct: 12  TNYGATNIQVLDGIAHVRMRPAMYIGDIHS-RGLHHLIYEIVDNSIDETLGGYNDYIFVS 70

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS TV D+GRGIP D+H ++  SA E++MT + AGGKF++ +YKVSGGLHGVG SV
Sbjct: 71  LNPDGSVTVIDHGRGIPVDIHPDKKKSALELVMTLIGAGGKFDKGAYKVSGGLHGVGASV 130

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS W ++ + R+G  +   +  G+ +  +   G+   + GT+ TF+P  +IF V +F
Sbjct: 131 VNALSEWCEVEVYRDGKAWFQRYHRGVPEGDVKEIGATS-ERGTKTTFMPDPEIFKVTEF 189

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
             D +  R+REL+FLNS+++I +   +  E  + T  ++GG++ FV + D ++  L++ P
Sbjct: 190 RKDIIIDRMRELAFLNSNLKIVV---QDIEGEQETFHFEGGLKEFVLFTDANRLNLIKEP 246

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + I G +D+  +++A+++ND Y ENV  + NNI   +GGTH++G R ALTR + SY +K+
Sbjct: 247 VYIYGEKDSTIVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNSYAQKN 306

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K  K ++ GDD +EG T+V+S+K+ +P+F  QTK KL +SE +S+VES +N+ LS +
Sbjct: 307 DLLKNLKLALTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESVLNEQLSDF 366

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            E +P   K+I++KV  A+M R+AAR+A++LTRRK VL+ + LPGKLADCS  DP+  EL
Sbjct: 367 AESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEHCEL 426

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  K+L ++EI T+I ALGT  G+
Sbjct: 427 YIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKLLENEEIKTIILALGTNFGE 486

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           + F   KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI  G +YI +PPLY +  G
Sbjct: 487 EEFSQEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVYIAQPPLYLVKAG 546

Query: 548 KSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRN 589
           K  QY  D+E       ++ +  +          G ++   L +
Sbjct: 547 KDQQYAWDDEERNSIADMMRKGKANVHIQRYKGLGEMNPEQLWS 590



 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E+ +         ++      V    +      F F      I + ++       L L+
Sbjct: 485 GEEEFSQEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVY-IAQPPLYLV 543

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG---ISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
             G   +        ++I  + RKG   + +QRYKGLGEMN  QLW TT++P+ RSLL+V
Sbjct: 544 KAGKDQQYAWDDEERNSIADMMRKGKANVHIQRYKGLGEMNPEQLWSTTMDPEHRSLLQV 603

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + +A +AD +FS LMGD+VEPRREFI++N+     LD+
Sbjct: 604 SVENAMEADKVFSTLMGDKVEPRREFIEKNARYVRRLDV 642


>gi|163755890|ref|ZP_02163007.1| DNA gyrase, B subunit [Kordia algicida OT-1]
 gi|161324061|gb|EDP95393.1| DNA gyrase, B subunit [Kordia algicida OT-1]
          Length = 645

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 282/622 (45%), Positives = 404/622 (64%), Gaps = 13/622 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +N  Y A SIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSEENKNQ-YSAASIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEALAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V +N D S T  DNGRGIP  +H+++G+SA EV+MT + AGGKF++ SYKVSGGL
Sbjct: 59  CDTISVIINEDNSITTEDNGRGIPVGIHEKKGVSALEVVMTEIGAGGKFDKDSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L+  + R+G I+E  +  G    P+   G + +  GT VTF P + 
Sbjct: 119 HGVGVSCVNALSDHLRATVYRDGKIWEQEYERGKALYPVKAIGDS-DKRGTVVTFKPDAS 177

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
           IF+   ++NY+TL +R+RELS+LN  + I+L DKR+     E        + G++ F+ Y
Sbjct: 178 IFTQTLEYNYETLANRMRELSYLNKGITITLTDKRNKDEKGEYIGEVFHSQEGLKEFIKY 237

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD +++ ++   +  +G ++ I +++AM +N  Y EN+  + NNI   +GGTHLSG R  
Sbjct: 238 LDGNREQIIADVVAFEGEKNGIPVEVAMTYNTSYSENLHSYVNNINTHEGGTHLSGFRRG 297

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y E +    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV + 
Sbjct: 298 LTHTLKKYAEGTGMLDKLKFDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVSAS 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V+ I  LPGKL+
Sbjct: 358 VSQAVSEMLTDYLEEHPDDAKTIVQKVVLAAQARHAAQKAREMVQRKTVMSIGGLPGKLS 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 418 DCSEQDPAKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 477

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRYHKI+IM DADVDG+HI TL+LTFFFR M  LI N
Sbjct: 478 NIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTFFFRYMKELIEN 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI  PPLY + +G   +Y  ++E  +  +        I+ +     + ++      +
Sbjct: 538 GHIYIAAPPLYLVKKGAKRRYAWNDEERDAIIEEFGQGANIQRYKGLGEMNAEQLWDTTM 597

Query: 592 D-DALKIDKLIKDFYPNHDKTF 612
           + D   + +++ D     D+ F
Sbjct: 598 NPDFRTLRQVMIDNGGEADRVF 619



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 95/199 (47%), Gaps = 7/199 (3%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +        E+  K+ + S      +
Sbjct: 453 LPLRGKILNVEKAMQHKVFENEEIKNIFTALGVTIG------TEEDSKALNLSKLRYHKI 506

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      V    +      F F    + I +  I       L L+  G K +        
Sbjct: 507 VIMCDADVDGSHIATLILTFFFRYMKELIENGHIY-IAAPPLYLVKKGAKRRYAWNDEER 565

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D I     +G ++QRYKGLGEMNA QLW+TT+NPD R+L +V I +  +AD +FS LMGD
Sbjct: 566 DAIIEEFGQGANIQRYKGLGEMNAEQLWDTTMNPDFRTLRQVMIDNGGEADRVFSMLMGD 625

Query: 784 EVEPRREFIQENSLPSALD 802
           EV PRREFI++N++ + +D
Sbjct: 626 EVPPRREFIEKNAVYANID 644


>gi|227498783|ref|ZP_03928923.1| type IIA topoisomerase [Acidaminococcus sp. D21]
 gi|226904235|gb|EEH90153.1| type IIA topoisomerase [Acidaminococcus sp. D21]
          Length = 648

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 303/601 (50%), Positives = 405/601 (67%), Gaps = 17/601 (2%)

Query: 1   MSDNIQNS----------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLD 50
           M++                Y A+ IQ+L+GL+AV+KRPSMYIG      GLHH++YEV+D
Sbjct: 1   MTEKDNEKTIEEEIAVHGEYGAEQIQVLEGLEAVRKRPSMYIGSISA-RGLHHLVYEVID 59

Query: 51  NAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           N+IDE+L GY D I V +  D S TV DNGRGIP ++HK  G  A EV+MT LHAGGKF 
Sbjct: 60  NSIDEALAGYCDHILVEIGEDNSITVVDNGRGIPVEMHKI-GKPAIEVVMTILHAGGKFG 118

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDT 169
              YKVSGGLHGVGVS VNALS  +++ +K++G IY + F  G    PL V G     DT
Sbjct: 119 DGGYKVSGGLHGVGVSCVNALSRRMEVEVKKDGKIYGIEFSKGKTVRPLYVKGECDAKDT 178

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F P   IF+   ++Y+TL+HR+REL+FLN  V+I L D RS    +    Y+GGI
Sbjct: 179 GTSVHFWPDDTIFTETVYSYETLKHRIRELAFLNKGVKIELKDDRSG--ADEIFHYEGGI 236

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV Y+++ K+ +  +PI ++G R +  +++AM++ D Y EN+  F NNI  ++GGTHL
Sbjct: 237 ISFVEYINKGKEAIFNTPIYVEGERQDTIVEVAMQYTDAYTENIYTFVNNINTEEGGTHL 296

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GL+ ALTR I  Y  K+   K  + ++ GDD REG T VLS+K+ +P+F  QTK KL +
Sbjct: 297 AGLKQALTRSINDYARKNGLLKDSEENLSGDDVREGLTCVLSLKVREPQFEGQTKTKLGN 356

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +V++ V+D L+ + EE+   AK IV+K + +S  R AAR+ARDLTRRK  L+++S
Sbjct: 357 SEVRGIVDNMVSDALNEYFEENAPTAKKIVEKAILSSRARAAARKARDLTRRKSALEVSS 416

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS ++ +++E+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DKML
Sbjct: 417 LPGKLADCSSKNAEETEIYIVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKARLDKML 476

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++ EI ++ITA G GIG D FD++K+RY KIIIMTDADVDGAHIRTLLLTFF+R M  LI
Sbjct: 477 NNNEIRSMITAFGCGIG-DEFDLSKIRYGKIIIMTDADVDGAHIRTLLLTFFYRYMQPLI 535

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVK-DEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            NG ++I +PPLY I  GK+  Y   D+E  +        +          G ++   L 
Sbjct: 536 RNGNVFIAQPPLYLIRTGKNHTYAYSDDELQKKLDEVGRQNNPYVQRYKGLGEMNPEQLW 595

Query: 589 N 589
            
Sbjct: 596 E 596



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 4/126 (3%)

Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKG-ISMQ 737
            + +F  +Y + +  N         L LI  G           L   +  +GR+    +Q
Sbjct: 522 LLLTFFYRYMQPLIRNGNVFIAQPPLYLIRTGKNHTYAYSDDELQKKLDEVGRQNNPYVQ 581

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN  QLWETT++P  R++L+V + DA+ AD +FS LMGD+VEPRR+FI+EN+ 
Sbjct: 582 RYKGLGEMNPEQLWETTMDPSKRTVLQVHLEDAASADSVFSVLMGDKVEPRRQFIEENAG 641

Query: 798 PS-ALD 802
               LD
Sbjct: 642 KVTNLD 647


>gi|78188013|ref|YP_378351.1| DNA gyrase, B subunit [Chlorobium chlorochromatii CaD3]
 gi|78170212|gb|ABB27308.1| DNA gyrase subunit B [Chlorobium chlorochromatii CaD3]
          Length = 637

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 280/632 (44%), Positives = 407/632 (64%), Gaps = 5/632 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++Y A +IQ+L G++ V+ RP+MYIGD     GLHH++YE++DN+IDE+L G+ D I
Sbjct: 1   MPPAAYGATNIQVLDGIEHVRMRPAMYIGDIHS-RGLHHLVYEIVDNSIDETLGGFNDYI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V LN DGS TV D+GRGIP D+H E+  SA E++MT + AGGKF++ +YKVSGGLHGVG
Sbjct: 60  FVALNADGSITVIDHGRGIPVDMHPEKQKSALELVMTVIGAGGKFDKGAYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALS W ++ + R+G  Y   +  G+    + V G + +  GT+ TF+P   IF  
Sbjct: 120 ASVVNALSEWCEVEVYRDGKAYYQRYERGVPQGDVKVIGDS-DQRGTKTTFMPDGTIFKT 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F  + +  R+REL+FLN +++I +   +     +    ++GGI  FV + D+++  L+
Sbjct: 179 TEFRKEIIIDRMRELAFLNKNLRIIV---QDTNGEQEEFHFEGGICEFVRFTDQNRLNLL 235

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + PI + G RD   +++A+++ND Y ENV  + NNI   +GGTH++G R ALTR + SY 
Sbjct: 236 REPIYLYGERDGTVVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNSYA 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +K+   K  K ++ GDD +EG T+V+S+K+ +P+F  QTK KL +SE +S+VE+ VND L
Sbjct: 296 QKNDLLKNLKLTLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETVVNDQL 355

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + E +P   K+I++KV  A+M R+AAR+A++LTRRK VL+ + LPGKLADCS  DP+ 
Sbjct: 356 AEFAESNPNTLKLIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEH 415

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  KML ++EI T+I ALGT 
Sbjct: 416 CELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTS 475

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G + F + KLRY KIIIMTDADVDGAHIRTLLLTFFFR M  +I  G +YI +PPLY +
Sbjct: 476 FGDEEFAVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPVIEAGRVYIAQPPLYLV 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK   Y  D++     + N    ++ +     +      ++      +  +D   +  
Sbjct: 536 KSGKDQHYAWDDDERNSIVDNMKKMQKSKANIHIQRYKGLGEMNPEQLWSTTMDPAHRSL 595

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                +  +E   +      +  +     +  
Sbjct: 596 LLVSVENAMEADQVFSTLMGDKVEPRREFIEK 627



 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            ++ +         ++      V    +      F F      I + R+       L L+
Sbjct: 477 GDEEFAVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPVIEAGRVY-IAQPPLYLV 535

Query: 709 CNGDKI-------KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
            +G          +       +       +  I +QRYKGLGEMN  QLW TT++P  RS
Sbjct: 536 KSGKDQHYAWDDDERNSIVDNMKK-MQKSKANIHIQRYKGLGEMNPEQLWSTTMDPAHRS 594

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LL V + +A +AD +FS LMGD+VEPRREFI++N+     LD+
Sbjct: 595 LLLVSVENAMEADQVFSTLMGDKVEPRREFIEKNARYVRRLDV 637


>gi|330813294|ref|YP_004357533.1| DNA gyrase subunit B [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486389|gb|AEA80794.1| DNA gyrase subunit B [Candidatus Pelagibacter sp. IMCC9063]
          Length = 696

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 329/602 (54%), Positives = 426/602 (70%), Gaps = 26/602 (4%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS N++      SY ADSI++LKGLDAV+KRP MYIGDTD  +GLHHMI+EV+DN+IDE+
Sbjct: 1   MSKNLKKIEKPESYGADSIRVLKGLDAVRKRPGMYIGDTDDGTGLHHMIFEVVDNSIDEA 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+   I V +N D + TVSDNGRGIP D+HK EGISAAEVIMT+LHAGGKF+  +YKV
Sbjct: 61  LAGHCSKIDVFINADNTVTVSDNGRGIPVDIHKSEGISAAEVIMTQLHAGGKFDHNTYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL I RE   Y + F NG +  PLV  GS+  +TGT +TF 
Sbjct: 121 SGGLHGVGVSVVNALSKNLKLTISREKKKYFVEFENGAVVKPLVEIGSSE-ETGTTLTFS 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++IF+   F    L+ RL+EL++LN  ++I+LID+R  +P+     ++GGI+ FV  L
Sbjct: 180 PSTEIFTSTKFQISILEKRLKELAYLNKGLEINLIDQRKSKPQIFQFKFEGGIKEFVIDL 239

Query: 237 DRHKK--------PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +++K+         ++  PI   G+++NI ++ ++ WN  Y E V+CFTNNIPQKDGGTH
Sbjct: 240 NKNKEKIKNDTGKQVLDDPIYFIGTKNNIEVECSLVWNATYSEQVMCFTNNIPQKDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR I  YV  +  +KK+K ++ GDD REG   VLS K+PDP+FSSQTKEKLV
Sbjct: 300 LLGFRNAITRLINKYVTDNGLAKKEKVAISGDDVREGLICVLSAKVPDPKFSSQTKEKLV 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR VVE+  ++ LS W ++H  E KII+ K++ A++ R+ AR+AR+  RRK  LDI 
Sbjct: 360 SSEVRPVVETIASEQLSMWFDQHQKETKIIIGKIIQAAVAREVARKARESVRRKSALDIT 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE------- 461
           SLPGKLADC   D + +ELF+VEGDSAGGSAKQ R+RE QA+LPLRGKILN         
Sbjct: 420 SLPGKLADCQTNDKEMAELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTYVQQKNDS 479

Query: 462 ---RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
              +  F KMLSS EI TLI ALGTG   D F I  LRY KI+IMTDADVDG+HIRTLLL
Sbjct: 480 SEKKKVFAKMLSSNEIITLINALGTGF--DPFQIENLRYGKIVIMTDADVDGSHIRTLLL 537

Query: 519 TFFFRQ-MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           TFF  +    LI +G ++I +PPLY +T+G    Y+K+EE+LED++I+ S   +      
Sbjct: 538 TFFNNEPFNQLIRSGRIFIAQPPLYKMTKGSKSTYIKNEEALEDFIISNSAVLKSMKKNS 597

Query: 578 SK 579
            +
Sbjct: 598 EE 599



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 20/136 (14%)

Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLG 743
           + GSK   I +    E+++   S +    K       +  +      +   ++QR+KGLG
Sbjct: 565 TKGSKSTYIKNEEALEDFIISNSAVLKSMKKNSEEFKNSFE--MEKAK--YTLQRFKGLG 620

Query: 744 EMNASQLWETTLNPDTRSLLRVK---------ITDASQAD------DLFSRLMGDEVEPR 788
           EMN  +LW TTL+P   +LL+V          +  + +        ++F  LMGD+V  R
Sbjct: 621 EMNPEELWNTTLDPKNNTLLKVNYSSSCDKLAMEGSEETSPSPEDIEIFDILMGDDVSKR 680

Query: 789 REFIQENSLPS-ALDI 803
           + FI  N++    LDI
Sbjct: 681 KNFINTNAINVNNLDI 696


>gi|312130783|ref|YP_003998123.1| DNA gyrase subunit b [Leadbetterella byssophila DSM 17132]
 gi|311907329|gb|ADQ17770.1| DNA gyrase subunit B [Leadbetterella byssophila DSM 17132]
          Length = 649

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 295/630 (46%), Positives = 405/630 (64%), Gaps = 16/630 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     Y A +IQ+L+GL+AV+KRP+MYIGD  G  GLHH+I+EV+DN+IDE++ GY
Sbjct: 1   MSEN-NKQDYSASNIQVLEGLEAVRKRPAMYIGDI-GIKGLHHLIWEVVDNSIDEAMAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I  T+N D S TV DNGRGIPT  H++E  SA EV++T LHAGGKF++ +YKVSGGL
Sbjct: 59  CNRIETTINTDNSITVKDNGRGIPTGWHEKEQKSALEVVLTVLHAGGKFDKDTYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS+ L+  + R+G I E  F  G    P    G   +  GT + F P   
Sbjct: 119 HGVGVSCVNALSTHLRAEVHRDGKITEQEFSIGKPLYPAREIG-TTDYRGTIIHFKPDDS 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFVSYL 236
           IF V ++ Y+T+ +RLRELSFLN  + ++L D        +P+      +GG+  FV YL
Sbjct: 178 IFQVTEYKYETVANRLRELSFLNKGITLTLTDLRELDEEGKPKYEEFHSEGGLIEFVEYL 237

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           D+ ++ L+ +P+ ++G RD + ++++M +N  Y ENV  F NNI   +GGTH+SG R AL
Sbjct: 238 DKSRERLITTPMYMEGQRDGVPVEVSMTYNTSYSENVSSFVNNINTPEGGTHVSGFRMAL 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY EKS    K+K  + GDD REG T+V+S+K+ +P+F  QTK KL +SEV + V
Sbjct: 298 TRTLKSYAEKSGLLAKEKIEISGDDFREGLTAVISVKVAEPQFEGQTKSKLGNSEVTAAV 357

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
              V + L  +LEE+P +AKIIV KV+ A+  R AA++AR++ +RK VL  + LPGKLAD
Sbjct: 358 SGCVQEMLENYLEENPKDAKIIVDKVILAARARIAAKKAREMVQRKNVLVGSGLPGKLAD 417

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CSE DP   E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A+  K+  ++EI  
Sbjct: 418 CSEHDPALCEVYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKAQEYKIYENEEIKN 477

Query: 477 LITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           + TALG  IG++  +      KLRYHKIIIMTDAD+DG+HIRTL+LTFF+R M  +I NG
Sbjct: 478 IFTALGVQIGKEGDERALNLEKLRYHKIIIMTDADIDGSHIRTLILTFFYRFMREIIENG 537

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           +LYI +PPLY + +GK   Y   EE     +   +   + E     +           + 
Sbjct: 538 YLYIAQPPLYLVKKGKDEIYAWTEEQRYAAVKKLAGGGKEENVGVQRYKGLGEMNPEQL- 596

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                +  +   +    +  IE A  + + 
Sbjct: 597 ----WETTMNPQHRTLKQVTIESAAEADML 622



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 11/192 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E  QE  +    ++ N    +      E  E++ +        ++      +    
Sbjct: 458 ILNVEKAQEYKIYENEEIKNIFTALGVQIGKEGDERALNLEKLRYHKIIIMTDADIDGSH 517

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-DKIKITGPCSLLDTIFSIGRKG- 733
           +      F +    + I +  +       L L+  G D+I           +  +   G 
Sbjct: 518 IRTLILTFFYRFMREIIENGYLY-IAQPPLYLVKKGKDEIYAWTEEQRYAAVKKLAGGGK 576

Query: 734 ---ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
              + +QRYKGLGEMN  QLWETT+NP  R+L +V I  A++AD LFS LMGD+V PRR+
Sbjct: 577 EENVGVQRYKGLGEMNPEQLWETTMNPQHRTLKQVTIESAAEADMLFSMLMGDDVPPRRD 636

Query: 791 FIQENSLPSALD 802
           FI++N+  + +D
Sbjct: 637 FIEKNARYANVD 648


>gi|149369783|ref|ZP_01889634.1| DNA gyrase subunit B [unidentified eubacterium SCB49]
 gi|149356274|gb|EDM44830.1| DNA gyrase subunit B [unidentified eubacterium SCB49]
          Length = 655

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 285/601 (47%), Positives = 395/601 (65%), Gaps = 11/601 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +  +Y AD IQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L G+
Sbjct: 10  MSEENKKGNYGADQIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVIDNSIDEALAGH 68

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D + V +N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGL
Sbjct: 69  CDTVDVWINEDNSITVRDNGRGIPVDIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 128

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  LK  + R G+IYE  +  G    P+   GS   D GTEVTF P  +
Sbjct: 129 HGVGVSCVNALSVHLKATVFRNGSIYEQEYERGKAMYPVKQVGSTE-DRGTEVTFKPDEE 187

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235
           IF     +NYDTL  RLREL+FLN  + I+L DKR  E     +  T     G++ FV +
Sbjct: 188 IFKQTREYNYDTLASRLRELAFLNKGITITLEDKREVEEDGSFKGETFHSTEGLKEFVRF 247

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD +++ L+   I ++G +++I +++AM +N  Y+EN+  + NNI   +GGTHLSG R  
Sbjct: 248 LDGNREMLIADVISMEGEKNDIPVEVAMVYNTSYNENLHSYVNNINTHEGGTHLSGFRRG 307

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 308 LTHTLKKYADASGMLDKLKFDISGDDFREGLTAIVSVKVQEPQFEGQTKTKLGNREVTSA 367

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L  +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+    LPGKL+
Sbjct: 368 VSQAVSEMLENYLEENPNDAKTIVQKVILAATARHAARKAREMVQRKTVMSGGGLPGKLS 427

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP++ E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 428 DCSEQDPERCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIR 487

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LTFFFR M  L+ +
Sbjct: 488 NIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMRELVES 547

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI  PPLY + +G   +Y   +   +        S  I+ +     + +       +
Sbjct: 548 GYVYIATPPLYLVKKGAKKEYAWSDAERDALNEKFGGSASIQRYKGLGEMNASQLWDTTM 607

Query: 592 D 592
           +
Sbjct: 608 N 608



 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 52/123 (42%), Positives = 73/123 (59%), Gaps = 1/123 (0%)

Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRY 739
            I +F  +Y R              L L+  G K +     +  D +        S+QRY
Sbjct: 532 LILTFFFRYMRELVESGYVYIATPPLYLVKKGAKKEYAWSDAERDALNEKFGGSASIQRY 591

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNASQLW+TT+NPD R+L +V I + ++AD +FS LMGDEV PRREFI++N++ +
Sbjct: 592 KGLGEMNASQLWDTTMNPDFRTLRQVAIDNGTEADRIFSMLMGDEVPPRREFIEKNAVYA 651

Query: 800 ALD 802
            +D
Sbjct: 652 NID 654


>gi|166367564|ref|YP_001659837.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
 gi|166089937|dbj|BAG04645.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
          Length = 640

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 289/586 (49%), Positives = 401/586 (68%), Gaps = 4/586 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 2   TSNYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  DGS +V+D+GRGIPTD+H   G SA E ++T LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  DIKADGSVSVTDDGRGIPTDVHPTTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS+W+ + + R+  ++   +  GI    LV + S    TGT V FLP ++IFS   
Sbjct: 121 VVNALSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y TL  RLREL++LN+ V+I+  D R  EP   T  Y+GGI+ +V+Y+ R K+ L +
Sbjct: 181 EFDYSTLSGRLRELAYLNAGVKITFSDYRPEEPHIETYCYEGGIKEYVAYMCREKETLHK 240

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             I + G ++ I+I++A +W  D Y +N+L F NNI   DGGTHL GL++ LTR + +  
Sbjct: 241 DIIYVSGEKNGINIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K+++ ++ G++ REG T+V+S+K+P+P F  QTK KL ++EVR +V+S V + L
Sbjct: 301 RKRNKIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +LE++P  A  I++K + A    +AARRARDL RRK VL+ + LPGKLADCSERDP++
Sbjct: 361 NEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCSERDPER 420

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI +LITALG G
Sbjct: 421 SEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLG 480

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  + FD ++LRYH+I++MTDADVDGAHIRTLLLTFF+R   +LI  G++YI  PPLY +
Sbjct: 481 IKGEDFDPSQLRYHRIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKL 540

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            RGK+  Y   +  L+  +     +           G +    L +
Sbjct: 541 ERGKNHSYCYSDRELQQKIAEFPSNANYTIQRFKGLGEMMPQQLWD 586



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI- 729
           V    +      F +  +   I    +      +  L    +         L   I    
Sbjct: 504 VDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKLERGKNHSYCYSDRELQQKIAEFP 563

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
                ++QR+KGLGEM   QLW+TT+NP+TR+L RV+I DA++A++LF+ LMGD V PRR
Sbjct: 564 SNANYTIQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAKAEELFTILMGDRVAPRR 623

Query: 790 EFIQENSLPSA---LDI 803
           EFI+ +        LDI
Sbjct: 624 EFIETHGSRLNLTDLDI 640


>gi|146300010|ref|YP_001194601.1| DNA gyrase, B subunit [Flavobacterium johnsoniae UW101]
 gi|146154428|gb|ABQ05282.1| DNA gyrase subunit B [Flavobacterium johnsoniae UW101]
          Length = 646

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 284/598 (47%), Positives = 387/598 (64%), Gaps = 12/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ I+ ++Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MSEEIKKNNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N DGS TV DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDTIGVTINEDGSVTVEDNGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  +K  + REG IYE  +  G    P+   G   +  GT  TF P   
Sbjct: 120 HGVGVSVVNALSVHMKSTVFREGKIYEQEYERGKSLYPVKQIGET-DKRGTRQTFFPDDT 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
           IF     F+YDTL  R+RELSFLN  + I+  DKR      E +        G++ ++ Y
Sbjct: 179 IFQQTTEFSYDTLSARMRELSFLNKGITITFTDKREVDDKGEFKSEVFHSDEGLKEYIRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD +++P++   I +   +  I +++A+ +N  Y EN+  + NNI   +GGTHL G RS 
Sbjct: 239 LDGNREPIISHVISMDHEKGEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRSG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTRTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVVSP 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V + L  +LEE+P +AKII++KV+ A+  R AA++AR++ +RK V+    LPGKL+
Sbjct: 359 VSQAVGEMLENYLEENPNDAKIIIQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP + E++LVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 419 DCSEQDPARCEVYLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIR 478

Query: 476 TLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  +G        +I KLRYHK+IIM DADVDG+HI TL+LTFFFR M  LI  
Sbjct: 479 NIFTALGVTVGTAEDSKALNIEKLRYHKVIIMCDADVDGSHISTLILTFFFRFMKELIEE 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           G +YI  PPLY + +G   +Y  ++   +     +             G ++   L  
Sbjct: 539 GHVYIAAPPLYLVKKGNKKEYAWNDVQRDQ-ANERMGGSANIQRYKGLGEMNAEQLWE 595



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 25/208 (12%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +    +  A   EK  +  +    I+
Sbjct: 454 LPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTAEDSKALNIEKLRYHKV----II 509

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN----YLTILSLICNGDKIKITGP 719
           +            L  +  F       R     IEE         L L+  G+K +    
Sbjct: 510 MCDADVDGSHISTLILTFFF-------RFMKELIEEGHVYIAAPPLYLVKKGNKKEY--- 559

Query: 720 CSLLDTI-FSIG--RKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
               + +       R G   ++QRYKGLGEMNA QLWETT++P  R+L +V I   ++AD
Sbjct: 560 --AWNDVQRDQANERMGGSANIQRYKGLGEMNAEQLWETTMDPQFRTLRQVTIDSLAEAD 617

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALD 802
            +FS LMGDEV PRREFI++N++ + +D
Sbjct: 618 RVFSMLMGDEVPPRREFIEKNAVYANID 645


>gi|282855958|ref|ZP_06265249.1| DNA gyrase, B subunit [Pyramidobacter piscolens W5455]
 gi|282586177|gb|EFB91454.1| DNA gyrase, B subunit [Pyramidobacter piscolens W5455]
          Length = 632

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 283/599 (47%), Positives = 388/599 (64%), Gaps = 9/599 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y A+ IQIL+GLD V+KRP MYIGDT    GLHH +YEV+DN++DE+L G+   ITV
Sbjct: 2   STQYTAEDIQILEGLDPVRKRPGMYIGDT-TTRGLHHCVYEVVDNSVDEALGGFCSEITV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+ D S +VSDNGRGIP D H   G  A EV++T LHAGGKF+  +YK+SGGLHGVGVS
Sbjct: 61  TLHADQSVSVSDNGRGIPVDPHPSNGRPALEVVLTVLHAGGKFDNHNYKISGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS WL++ + R+G  +   F  G   + L   G+     GT VTF P ++IF    
Sbjct: 121 VVNALSEWLEVTVYRDGREWHERFERGTPVSGLT-GGTPTAKRGTTVTFRPDAEIFDEVA 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ +TL +R RE++FL   ++   +D+   +        +GG+  FV+Y+++ K+ L   
Sbjct: 180 FSAETLGNRFREMAFLIPGLKFIFVDEAEGKTWTYHY--EGGVSEFVAYINKGKQTLTPR 237

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI I+G +D ++++   ++ D Y E +  F N I   +GGTH++GLRSALTR I     +
Sbjct: 238 PIVIRGEKDGVAVEAGFQYTDEYIERLYSFANLINTIEGGTHVAGLRSALTRGINEGARR 297

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K+   ++ GDD REG T VLS+K+ +P+F  QTK KL +  V+ +V+S + DG+  
Sbjct: 298 AGVLKEKDENLSGDDLREGLTCVLSVKLGNPQFEGQTKTKLGNGNVKGIVDSLLYDGILQ 357

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
            LEE P   K I++K + A   R+AA++AR+L  RK  L   SLPGKLADCS R  +  E
Sbjct: 358 ALEEDPSVIKPIIEKAIKARQAREAAKKARELV-RKSALSGLSLPGKLADCSSRTAENCE 416

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR DKML S+EI  +I ALG GIG
Sbjct: 417 VYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARMDKMLGSKEIRVIIQALGCGIG 476

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI KLRY+KIIIMTDADVDGAHI TLLLTFFFR M  LI  G +Y   PPLY +  
Sbjct: 477 ED-FDIGKLRYNKIIIMTDADVDGAHISTLLLTFFFRHMRELIEKGHVYQAVPPLYRVQV 535

Query: 547 GKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           GK + Y+  ++ L  ++   +       ++ +     +         +D A ++ K I+
Sbjct: 536 GKKVDYLYSDKELRKFMDGLAADGKKAAVQRYKGLGEMNPGQLWETTMDPATRLLKQIE 594



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL---LDTIFSI 729
               L  +  F    +        + +    +  +        +     L   +D + + 
Sbjct: 501 HISTLLLTFFFRHMRELIEK--GHVYQAVPPLYRVQVGKKVDYLYSDKELRKFMDGLAAD 558

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           G+K  ++QRYKGLGEMN  QLWETT++P TR L ++++ D + AD+ F  LMGD VEPRR
Sbjct: 559 GKK-AAVQRYKGLGEMNPGQLWETTMDPATRLLKQIELDDLAGADEYFDILMGDRVEPRR 617

Query: 790 EFIQENSLPS-ALDI 803
           +FI++++     LD+
Sbjct: 618 QFIEQHAHEVHNLDV 632


>gi|257062759|ref|YP_003142431.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476]
 gi|256790412|gb|ACV21082.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476]
          Length = 648

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 290/601 (48%), Positives = 395/601 (65%), Gaps = 17/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  Q+S YDA  IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DNA+DE+L GY
Sbjct: 1   MAEK-QSSHYDAGDIQVLEGLEAVRKRPGMYIGST-GTRGLHHLVYEVVDNAVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV DNGRGIP + H +E I   EV++T LHAGGKF  + YKVSGGL
Sbjct: 59  CTKIDVIIHEDNSITVIDNGRGIPVEKHPKEKIPTVEVVLTILHAGGKFGGEGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS+ L++ + R+G  Y ++F  G     L   G++     T VTF P  +
Sbjct: 119 HGVGVSCVNALSTRLEVEVCRDGKKYGIAFSRGKTVEKLHQIGTSKTTG-TTVTFWPDPE 177

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235
           IF+    ++Y+TLQ R RE++FLN  ++I L D+R  +     +  T  Y GGI  FV Y
Sbjct: 178 IFTDTLVYDYETLQERFREMAFLNKGLRIELTDERQQDEEGNFKHETFKYDGGIVDFVKY 237

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHLSGLRS 294
           L++ K+ L   PI  +    + ++++ M+W+  Y  N ++ F NNI   +GGTHL G ++
Sbjct: 238 LNQGKETLN-KPIYFEAENADGTVEVVMQWSTSYGTNGIMAFANNINTHEGGTHLDGFKN 296

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y       K+  +++ GDD REG  +++S+K+ DP+F  QTK KL + E+R 
Sbjct: 297 ALTRTINDYARSKGLLKEKDKNLTGDDAREGLAAIISVKLHDPQFEGQTKTKLGNVEIRG 356

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +V+  V  GLS +LEE+P  AK IV K   A   R+AAR+AR++TRRKGVLD  S+PGKL
Sbjct: 357 LVQGAVTKGLSEYLEENPTPAKRIVGKASQALKAREAARKAREMTRRKGVLDSFSMPGKL 416

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS R+P  SE+F+VEGDSAGGSAKQ R R+ QAILPLRGKILNVERA   + LSS  I
Sbjct: 417 ADCSSREPALSEMFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTI 476

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +LITA+GT IG D ++ +  RYH+IIIMTDADVDGAHIR LLLTFF+R MP LI+ G++
Sbjct: 477 SSLITAIGTNIG-DDYNGDNARYHRIIIMTDADVDGAHIRCLLLTFFYRYMPDLINRGYI 535

Query: 535 YIIKPPLYGITRGKSL-----QYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLR 588
           YI +PPLYG+ +  S      +Y+ ++E+ +  +      ++         G +    L 
Sbjct: 536 YIAQPPLYGLKKKNSASGKILKYIYNDEAKDQIMAQLEDPDKYDIQRYKGLGEMDPEQLW 595

Query: 589 N 589
            
Sbjct: 596 E 596



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+ P+TR+L++V I DA+ A+   S LMGD+VEPR+EFIQ+N
Sbjct: 580 IQRYKGLGEMDPEQLWETTMEPETRTLIQVSIEDAAAAERAVSDLMGDDVEPRKEFIQKN 639

Query: 796 SLPSA-LDI 803
           +L    LDI
Sbjct: 640 ALDVRFLDI 648


>gi|159028965|emb|CAO87426.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 640

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 290/586 (49%), Positives = 402/586 (68%), Gaps = 4/586 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 2   TSNYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  DGS +V+D+GRGIPTD+H   G SA E ++T LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  DIKADGSVSVTDDGRGIPTDVHPTTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS+W+ + + R+  ++   +  GI    LV + S    TGT V FLP ++IFS   
Sbjct: 121 VVNALSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y TL  RLREL++LN+ V+I+  D R+ EP   T  Y+GGI+ +V+Y+ R K+ L +
Sbjct: 181 EFDYSTLSGRLRELAYLNAGVKITFSDYRAEEPHIETYCYEGGIKEYVAYMCREKETLHK 240

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             I + G ++ I+I++A +W  D Y +N+L F NNI   DGGTHL GL++ LTR + +  
Sbjct: 241 DIIYVSGEKNGINIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K+++ ++ G++ REG T+V+S+K+P+P F  QTK KL ++EVR +V+S V + L
Sbjct: 301 RKRNKIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +LE++P  A  I++K + A    +AARRARDL RRK VL+ + LPGKLADCSERDP+K
Sbjct: 361 NEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCSERDPEK 420

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI +LITALG G
Sbjct: 421 SEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLG 480

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  + FD ++LRYH+I++MTDADVDGAHIRTLLLTFF+R   +LI  G++YI  PPLY +
Sbjct: 481 IKGEDFDPSQLRYHRIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKL 540

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            RGK+  Y   +  L+  +     +           G +    L +
Sbjct: 541 ERGKNHSYCYSDRELQQKIAEFPSNANYTIQRFKGLGEMMPQQLWD 586



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI- 729
           V    +      F +  +   I    +      +  L    +         L   I    
Sbjct: 504 VDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKLERGKNHSYCYSDRELQQKIAEFP 563

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
                ++QR+KGLGEM   QLW+TT+NP+TR+L RV+I DA++A++LF+ LMGD V PRR
Sbjct: 564 SNANYTIQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAKAEELFTILMGDRVAPRR 623

Query: 790 EFIQENSLPSA---LDI 803
           EFI+ +        LDI
Sbjct: 624 EFIETHGPRLNLTDLDI 640


>gi|158337618|ref|YP_001518793.1| DNA gyrase subunit B [Acaryochloris marina MBIC11017]
 gi|158307859|gb|ABW29476.1| DNA gyrase, B subunit [Acaryochloris marina MBIC11017]
          Length = 646

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 292/591 (49%), Positives = 403/591 (68%), Gaps = 10/591 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y AD IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G+   I + 
Sbjct: 3   TNYSADQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGHCKHIHIY 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGS  V+D+GRGIPTD H   G SA E +MT LHAGGKF+  SYKVSGGLHGVG+SV
Sbjct: 62  LNEDGSVRVTDDGRGIPTDKHPTTGKSALETVMTVLHAGGKFDGDSYKVSGGLHGVGISV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQD 186
           VNALS W++ ++ R G ++   F  GI  + LVV  +   ++GT +TFLP   IF+   +
Sbjct: 122 VNALSEWVEAKVWRNGKVHTQRFERGIPKSELVVEPTDRKESGTAITFLPDDTIFTVTTE 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+Y TL  RLREL++LN+ V+IS  D R     + EP+  T  Y GGI+ +V Y++R K+
Sbjct: 182 FDYKTLASRLRELAYLNAGVEISFHDNRLELLEADEPKVETYRYDGGIKEYVDYMNRDKE 241

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           P+ +  I ++G R+N+ +++A++W  D Y +N+L F NNI   DGGTHL GL++ LTR +
Sbjct: 242 PIHEECIYVEGERNNVQVEVALQWCRDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            S   K    K    ++ G+  REG T+V+S+K+P+P F  QTK KL ++EVR +V+S V
Sbjct: 302 NSLARKRSKLKDGDSNLGGEHIREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLV 361

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L+ HP  A  +++K L A    +AARRAR+L RRK VL+ ++LPGKLADCS R
Sbjct: 362 GEVLTEYLDFHPNVADSVIEKALQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSR 421

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI +LITA
Sbjct: 422 DPSTSEIYIVEGDSAGGSAKQGRDRGFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITA 481

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GI  + FD+++LRYH+II+MTDADVDGAHIRTLLLTFF+R    LI  G++YI  PP
Sbjct: 482 LGLGIKGEEFDVSQLRYHRIILMTDADVDGAHIRTLLLTFFYRYQRELIDQGYIYIACPP 541

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           LY I RG+S  Y   +  L++ + ++  +            G +    L +
Sbjct: 542 LYKIERGRSHYYCYSDRELQNLVQHEFPANANYTIQRFKGLGEMMPTQLWD 592



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 125/332 (37%), Gaps = 33/332 (9%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDY 562
           D+++ G HIR  L      ++P     G     +    + GI      + + +       
Sbjct: 315 DSNLGGEHIREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLDFHPN 374

Query: 563 LINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPNHDKT---FIEQAV 617
           + +  + + ++ F  ++      +L  R  + ++  +   + D       T   +I +  
Sbjct: 375 VADSVIEKALQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSTSEIYIVEGD 434

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDIL 663
            +G    +       ++       LN       K +  +                  D+ 
Sbjct: 435 SAGGSAKQGRDRGFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDVS 494

Query: 664 VKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
             R  R        V    +      F +  + + I    I      +  +         
Sbjct: 495 QLRYHRIILMTDADVDGAHIRTLLLTFFYRYQRELIDQGYIYIACPPLYKIERGRSHYYC 554

Query: 717 TGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                L + +          ++QR+KGLGEM  +QLW+TT+NP+TR+L ++ I DA++AD
Sbjct: 555 YSDRELQNLVQHEFPANANYTIQRFKGLGEMMPTQLWDTTMNPETRTLKQIDIEDAAEAD 614

Query: 775 DLFSRLMGDEVEPRREFIQENS--LP-SALDI 803
            +F+ LMGD V PRREFI+ +   L  + LDI
Sbjct: 615 RIFTILMGDRVAPRREFIETHGPRLNLAELDI 646


>gi|298675298|ref|YP_003727048.1| DNA gyrase subunit B [Methanohalobium evestigatum Z-7303]
 gi|298288286|gb|ADI74252.1| DNA gyrase, B subunit [Methanohalobium evestigatum Z-7303]
          Length = 634

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 301/589 (51%), Positives = 402/589 (68%), Gaps = 7/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D      YD+ +IQ+L+GL+AV+KRPSMYIG  D   GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MADK---QVYDSTNIQVLEGLEAVRKRPSMYIGSVDS-RGLHHLVYEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I   LN DGS T+ D+GRGIP D H +   SA EV+MT LHAGGKF++ SYKVSGGL
Sbjct: 57  CSEINTILNSDGSVTLEDDGRGIPVDTHAKYNKSALEVVMTLLHAGGKFDKNSYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVN LS WL + +KR+   Y   +  G     + V G +    GT+ TF P S+
Sbjct: 117 HGVGVSVVNGLSEWLDVEVKRDDKRYYQHYEKGYPKTEVQVLGESE-GNGTKFTFKPDSE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F+YD+L  RLREL+FLN  ++I++ D+RS E +E    Y GGI +FV +L++++
Sbjct: 176 IFESTEFDYDSLSTRLRELAFLNKGIKITIKDERSEEGQEDVFQYDGGIVSFVKHLNKNR 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ + PI  +G  D   +++++++ D Y E V  F NNI   +GGTH+ G ++ALTR  
Sbjct: 236 SPIHEEPIYFEGESDGTIVEISLQYTDSYGEYVYSFANNINTHEGGTHVIGFKTALTRVA 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+ K+   +K    + G+D REG T+++S K+PDP+F  QTK +L +S+V+ VVES V
Sbjct: 296 NDYIRKN-EIEKGNVRLTGEDIREGLTAIISAKIPDPQFEGQTKTRLGNSDVKGVVESLV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + LS +LEE+P  A  I+KK L A   R+AA+RAR+LTRRK  L++++LPGKLADCSE 
Sbjct: 355 TEELSRYLEENPKIANSIIKKALSAKRAREAAKRARELTRRKSALEVSTLPGKLADCSET 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+FLVEGDSAGGSAK GR R  QAILP RGKI+NVE+AR  K+L + EI +LITA
Sbjct: 415 DPSVSEIFLVEGDSAGGSAKMGRDRRFQAILPFRGKIINVEKARLSKVLKNNEILSLITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG+D FDINK RYHK+IIMTDADVDGAHIRTL+LTFFFR M  ++ NG++YI +PP
Sbjct: 475 MGTGIGED-FDINKARYHKVIIMTDADVDGAHIRTLILTFFFRYMNEMVDNGYVYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I +GK   Y+  E+     L                G ++   L  
Sbjct: 534 LYRIKKGKKEFYIHTEKEKNAKLKELGEKGVSIQRYKGLGEMNPEQLWA 582



 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
            +  +     +  I         +  +G KG+S+QRYKGLGEMN  QLW TT+NP++R L
Sbjct: 533 PLYRIKKGKKEFYIHTEKEKNAKLKELGEKGVSIQRYKGLGEMNPEQLWATTMNPESRKL 592

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
            +V + DA+ AD++FS LMG+EVEPRR+FI++++     LD+
Sbjct: 593 TQVTMEDAAAADEMFSILMGEEVEPRRQFIEKHATEVVNLDV 634


>gi|323342250|ref|ZP_08082482.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463362|gb|EFY08556.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 639

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 290/639 (45%), Positives = 403/639 (63%), Gaps = 6/639 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   + SY +  IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN IDE+L G+
Sbjct: 1   MSNTKVDHSYTSSDIQVLEGLEAVRKRPGMYIG-TTASRGLHHLVWEIVDNGIDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V ++ D   +VSDNGRGIP  +H + G+S AE I T LHAGGKF   +YKVSGGL
Sbjct: 60  ATEIIVNVDKDNVISVSDNGRGIPVGIHAKTGVSTAETIFTVLHAGGKFGGGAYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN-PLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL+++I  +G  Y + F  G     PL   G   +  GT V F    
Sbjct: 120 HGVGASVVNALSEWLEVKIYLDGIEYYLRFEEGGKVAVPLKEVGKT-DKKGTTVRFKADP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI-TMFYKGGIEAFVSYLD 237
            IF+    F++D L+ RLR+++FLN  +++   D+R PE        Y+ G+  +V Y++
Sbjct: 179 TIFTETTEFSHDVLRDRLRQIAFLNKGIKLVFQDEREPEETRHLEFVYEDGLREYVQYMN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +  +  +G  + I ++++M++NDG+  N+  F NNI   +GGTH  G + ALT
Sbjct: 239 ANKSPIHEEIVYCEGEEEGILVEVSMQYNDGFTPNIYSFCNNINTHEGGTHEDGFKLALT 298

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I +Y ++    KKD    +GDD REG T+++S+K PDP++  QTK KL +SEVR +V 
Sbjct: 299 RVINNYAKEHNLLKKDDDGFLGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIVS 358

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S   + L  +L EHP +AKIIV K   AS  R AAR+AR+LTRRKG L+++SLPGKLADC
Sbjct: 359 SVFGEQLERFLMEHPDDAKIIVDKAAIASKARVAARKARELTRRKGALEVSSLPGKLADC 418

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S R+P + E+++VEGDSAGGSAKQGR  + QAILPLRGK++NVE+AR  K+  + EI  +
Sbjct: 419 SNRNPSECEIYIVEGDSAGGSAKQGRDSKFQAILPLRGKVINVEKARLHKIFDNNEIRMM 478

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITA GTG+  D  DI+KLRYHKIIIMTDADVDGAHIRTLLLTFF+R +  LI NGF+YI 
Sbjct: 479 ITAFGTGV-SDEMDIDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRFLRPLIENGFVYIA 537

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY I+RG  + Y  +EE L++  +       ++ +     +  +      +D   + 
Sbjct: 538 QPPLYKISRGNKIAYAYEEEELDELKVEFGDRFNVQRYKGLGEMNPEQLWDTTMDPETRT 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              +            E  +   V       + N   A 
Sbjct: 598 LIQVTIDDAMEADVIFETLMGDEVAPRREFIQANAEYAD 636



 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 14/201 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  +F+    + +  +  + +++ ++    +  K    +  + D  
Sbjct: 452 LPLRGKVINVEKARLHKIFDNNEIRMMITAFGTGVSDEMDIDKLRYHKIIIMTDADVDGA 511

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSL 722
             R               + +F  ++ R +  N         L  I  G+KI        
Sbjct: 512 HIRT-------------LLLTFFYRFLRPLIENGFVYIAQPPLYKISRGNKIAYAYEEEE 558

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           LD +        ++QRYKGLGEMN  QLW+TT++P+TR+L++V I DA +AD +F  LMG
Sbjct: 559 LDELKVEFGDRFNVQRYKGLGEMNPEQLWDTTMDPETRTLIQVTIDDAMEADVIFETLMG 618

Query: 783 DEVEPRREFIQENSLPSALDI 803
           DEV PRREFIQ N+  + LDI
Sbjct: 619 DEVAPRREFIQANAEYADLDI 639


>gi|160946608|ref|ZP_02093811.1| hypothetical protein PEPMIC_00566 [Parvimonas micra ATCC 33270]
 gi|158446992|gb|EDP23987.1| hypothetical protein PEPMIC_00566 [Parvimonas micra ATCC 33270]
          Length = 638

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 293/590 (49%), Positives = 395/590 (66%), Gaps = 7/590 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   +  +Y A  I++L GL+ V+ RP MYIG T G  GLHH++YEV+DN+IDE+L G 
Sbjct: 1   MSKE-KIRNYGAKDIRVLTGLEPVRLRPGMYIGST-GVKGLHHLVYEVVDNSIDEALAGV 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT+  D S  V DNG GIP ++H + G S  E ++T LHAGGKFN  +Y+VSGGL
Sbjct: 59  CDTITVTIFEDNSVRVEDNGSGIPVEVHPQTGKSTLETVLTILHAGGKFNNNAYQVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL   +KR+G +YE  F  G   + L V G    +TGT +TF P S+
Sbjct: 119 HGVGVSVVNALSEWLIANVKRDGKLYEQQFSRGNTTSKLEVVG-TSKETGTIITFKPDSE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +  + L++R RE++FLN  V+I   D+R  E    T  Y+GGI++FV Y++R+K
Sbjct: 178 IFDTTIYEKEILRNRFREMAFLNKGVKIIFTDER--EDFTETFHYEGGIKSFVEYMNRNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L    I  QG R +  ++++M++ DGY ENVL F NNI   +GG+HL G R+ALTR +
Sbjct: 236 NNLHNEVIYFQGQRGDSQVEISMQYTDGYSENVLTFANNIHTPEGGSHLVGFRTALTRTL 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K    ++ GDD REG T ++SIK+P+P+F  QTK KL +SE R +VE+F+
Sbjct: 296 NDYGRKYNLIKDKDANLQGDDTREGLTGIVSIKLPNPQFEGQTKAKLGNSESRGIVETFL 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L  +LEE+P   KII++K   ++  R+AAR+ARDLTR+K +LD  +LPGKL+DC E 
Sbjct: 356 YDNLMTFLEENPKVGKIIIEKAQSSARAREAARKARDLTRKKSILDNTTLPGKLSDCQES 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D   +E++LVEGDSAGGSAKQGR  + QA+LPL+GKI+NVE+AR DK+L  +EI ++ITA
Sbjct: 416 DISVNEIYLVEGDSAGGSAKQGRDSKFQAVLPLKGKIMNVEKARIDKILGYEEIKSMITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGIG+D F+++ LRY KI+IMTDADVDGAHIRTL+LTFF+R M  LI  G +YI +PP
Sbjct: 476 FGTGIGKD-FNLDNLRYGKIVIMTDADVDGAHIRTLILTFFYRYMKELIEQGHVYIAQPP 534

Query: 541 LYGITRGKS-LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LYGI +G   ++Y   +E L+  L                G ++   L  
Sbjct: 535 LYGIIKGVKVVKYCWTDEELQASLDELGRDSHRIQRYKGLGEMNPAQLWE 584



 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++ + +        K ++        +V      V    +    
Sbjct: 452 IMNVEKARIDKILGYEEIKSMITAFGTGIGKDFNLDNLRYGKIVIMTDADVDGAHIRTLI 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRY 739
             F +    + I    +      +  +I     +K       L  ++  +GR    +QRY
Sbjct: 512 LTFFYRYMKELIEQGHVYIAQPPLYGIIKGVKVVKYCWTDEELQASLDELGRDSHRIQRY 571

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQENSL 797
           KGLGEMN +QLWETT+NP+ R  L+V I D      D+ FS LMGD+VEPRREFI++N+ 
Sbjct: 572 KGLGEMNPAQLWETTMNPENRLFLQVNIDDEELVSIDETFSTLMGDKVEPRREFIEQNAK 631

Query: 798 PS-ALD 802
               +D
Sbjct: 632 YVENID 637


>gi|88803546|ref|ZP_01119071.1| DNA gyrase, B subunit [Polaribacter irgensii 23-P]
 gi|88780558|gb|EAR11738.1| DNA gyrase, B subunit [Polaribacter irgensii 23-P]
          Length = 646

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 282/622 (45%), Positives = 402/622 (64%), Gaps = 12/622 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +  SYDA SIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MSEEKKTYSYDASSIQALEGMEHVRMRPSMYIGDV-GPRGLHHLVYEVVDNSIDEAMGGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D S T  DNGRGIP  +H++EG+SA +V+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDTIDVTINEDNSVTTRDNGRGIPVGIHEKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L   I +EG +++  +  G    P+   G + + TGT VTFLP   
Sbjct: 120 HGVGVSCVNALSDLLTATIHKEGKVWQQEYSKGKALYPVKTIGES-DFTGTIVTFLPDKS 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235
           IF     FNYDTL  R+RELS+LN  + I+L DKR             +   G+  F+ Y
Sbjct: 179 IFKQTTEFNYDTLATRMRELSYLNKGITITLTDKRSTDDEGNFISEVFYSDEGLPEFIKY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD  ++ L    I ++G ++ I +++AM +N  Y EN+  + NNI   +GGTHLSG R  
Sbjct: 239 LDSTREQLTSKIISMEGEKNGIPVEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y ++S   K  K  + GDD REG T+++S+K+ +P+F  QTK KL + EV + 
Sbjct: 299 LTGTLKKYADESGLLKNVKFEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVSAA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L+ +LEE+P +AKIIV+KV+ A+  R AAR+AR++ +RK V+ I  LPGKL+
Sbjct: 359 VSQSVSEMLTNYLEENPNDAKIIVQKVILAATARHAARKAREMVQRKTVMSIGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 419 DCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 478

Query: 476 TLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +      +++K+RYHK++IM DADVDG+HI TL+LTFFFR M  ++  
Sbjct: 479 NMFTALGVSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATLILTFFFRYMREMVEQ 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI  PPLY + +G+  +Y  D++  +        +  I+ +     + +       +
Sbjct: 539 GYIYIATPPLYLVKKGQKREYAWDDDQRDFIAQQMGGTVNIQRYKGLGEMNADQLWDTTM 598

Query: 592 D-DALKIDKLIKDFYPNHDKTF 612
           + +   + +++ D     D+ F
Sbjct: 599 NPEFRTLRQVVIDSPTEADRVF 620



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 1/126 (0%)

Query: 679 GSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737
            + I +F  +Y R    +         L L+  G K +        D I       +++Q
Sbjct: 521 ATLILTFFFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDDQRDFIAQQMGGTVNIQ 580

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMNA QLW+TT+NP+ R+L +V I   ++AD +FS LMGDEV PRREFI++N+ 
Sbjct: 581 RYKGLGEMNADQLWDTTMNPEFRTLRQVVIDSPTEADRVFSMLMGDEVPPRREFIEKNAK 640

Query: 798 PSALDI 803
            + +D+
Sbjct: 641 YAKIDV 646


>gi|6006289|dbj|BAA84773.1| DNA gyrase B subunit [Bacteroides fragilis]
          Length = 653

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 292/604 (48%), Positives = 397/604 (65%), Gaps = 17/604 (2%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R G IY+  +  G    P+   G A + TGT+  F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVGIADH-TGTKQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
              IF+   ++Y  L  RLREL++LN+ ++ISL D+R        +  T + + G+  FV
Sbjct: 179 DDSIFTETIYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKHETFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   + NI I++A+ +N G+ EN+  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNTEKQNIPIEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVN 358

Query: 354 SVVE-SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
            V+      + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPG
Sbjct: 359 GVLPIRRYGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS++DP+K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S+
Sbjct: 419 KLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESE 478

Query: 473 EIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           EI  + TALG  IG +      +I+KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +
Sbjct: 479 EIRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQI 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585
           I NG+LYI  PPLY   +GK  +Y   +   + ++       E  +        G ++  
Sbjct: 539 IQNGYLYIATPPLYLCKKGKIEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQ 598

Query: 586 DLRN 589
            L  
Sbjct: 599 QLWE 602



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 13/204 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+       E  + I  +L   +    +  A   +K  +  I      
Sbjct: 457 LPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANIDKLRYHKI------ 510

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL- 722
           +      V    +      F F    + I +  +       L L   G KI+        
Sbjct: 511 IIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY-IATPPLYLCKKG-KIEEYCWTDAQ 568

Query: 723 ----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               +DT        I  QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS
Sbjct: 569 RQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFS 628

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
            LMG++V PRREFI+EN+  + +D
Sbjct: 629 MLMGEDVGPRREFIEENATYANID 652


>gi|226226219|ref|YP_002760325.1| DNA gyrase subunit B [Gemmatimonas aurantiaca T-27]
 gi|226089410|dbj|BAH37855.1| DNA gyrase subunit B [Gemmatimonas aurantiaca T-27]
          Length = 658

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 305/581 (52%), Positives = 401/581 (69%), Gaps = 17/581 (2%)

Query: 1   MSDNIQ------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M+++         + Y A SI +LKGL+AV+KRP MYIG T    GLHH++YEV+DN+ID
Sbjct: 1   MANSNAPEAQEDENEYGAHSITVLKGLEAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+A  + VT++ D S +V D+GRGIP D+H  E +   E+ MT LHAGGKF++ +Y
Sbjct: 60  EALAGFAKRVEVTIHADDSISVEDDGRGIPVDVHPIEKLPGVELAMTVLHAGGKFDKNTY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEV 173
           KVSGGLHGVGVSVVNALS  LK+ IKR+G  + M F  G+    L    +    +TGT+V
Sbjct: 120 KVSGGLHGVGVSVVNALSDVLKVWIKRDGKEHFMDFARGVTTTKLKTLRNVPAKETGTKV 179

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-----ITMFYKG 227
            F P + IF     + + TL +RLREL+FLN  +QI+L D+R  E ++        F +G
Sbjct: 180 WFKPDATIFQETTRYEWATLANRLRELAFLNKGIQITLRDERPDEMKDGQPREEVFFARG 239

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+  FV +L  +KKPL Q  + +   RD+I I++A+++ND Y +NV  F NNI   +GGT
Sbjct: 240 GLREFVVFLTGNKKPLHQDVVYLDTERDDIGIEMALQYNDSYADNVFSFVNNINTHEGGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           HL+G +SALT  I  Y+E+S    K  + +   GDD REG T+VLS+K+ +P+F  QTK 
Sbjct: 300 HLTGFKSALTSVINKYIERSSNLNKKDKEIRLSGDDVREGLTAVLSVKVREPQFEGQTKT 359

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SE    V S +N+ LS +LEEHP  A  I+ K + AS  R+AAR+ARDLTR+K  L
Sbjct: 360 KLGNSEAEGAVRSVMNELLSQYLEEHPKTANAIIDKAISASRAREAARKARDLTRKKNAL 419

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D+A+LPGKLADCS  DP   EL+LVEGDSAGGSAKQGR+R  QAILPLRGKI+NVE+ARF
Sbjct: 420 DVAALPGKLADCSLSDPALCELYLVEGDSAGGSAKQGRNRNFQAILPLRGKIINVEKARF 479

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK+LS++EI T+ITA+GTGI +D FD+ K RY KIIIMTDADVDGAHIRTLLLTFFFRQM
Sbjct: 480 DKVLSNEEIRTIITAIGTGI-KDEFDLGKTRYQKIIIMTDADVDGAHIRTLLLTFFFRQM 538

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
             LI  G++YI +PPLY + +GK   Y   E+  + +    
Sbjct: 539 RELIDAGYMYIAQPPLYRVAKGKEEFYAYSEKERDSFSERL 579



 Score =  170 bits (431), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 10/202 (4%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A    V + E  + I  ++ + + +  +    + +K    +  + D  
Sbjct: 465 LPLRGKIINVEKARFDKVLSNEEIRTIITAIGTGIKDEFDLGKTRYQKIIIMTDADVDGA 524

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN-RIEENYLTILSLICNGDKIKITGPCSL 722
             R    +   F  +   +   G  Y       R+ +      +                
Sbjct: 525 HIRTL--LLTFFFRQMRELIDAGYMYIAQPPLYRVAKGKEEFYAYSEKER----DSFSER 578

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L      GR  I +QRYKGLGEMN +QLW+TT++P+TR++LRV + DA  AD  F  LMG
Sbjct: 579 LGG--PEGRGNIMVQRYKGLGEMNPAQLWKTTMDPETRTMLRVTMEDAVLADQTFQTLMG 636

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRR+FI+ N+     LD+
Sbjct: 637 DDVEPRRQFIESNARFVSNLDV 658


>gi|254424108|ref|ZP_05037826.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7335]
 gi|196191597|gb|EDX86561.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7335]
          Length = 645

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 288/646 (44%), Positives = 403/646 (62%), Gaps = 17/646 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A  IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNA+DE+L G+   IT  
Sbjct: 3   NNYGAQQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNAVDEALAGHCTHITAA 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS-YKVSGGLHGVGVS 126
           LN DGS TV+D+GRGIPTD+H   G SA E ++T LHAGGKF   S YKVSGGLHGVGVS
Sbjct: 62  LNADGSVTVTDDGRGIPTDIHPTTGKSALETVLTVLHAGGKFGGDSGYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185
           VVNALS W+++ + REG ++   F  G     L  T      TGT+VTF P + IF+   
Sbjct: 122 VVNALSEWVEVTVWREGKVHTQRFEQGNPIGKLK-TSKGSTKTGTQVTFKPDATIFTHTV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+YDT+  RLREL++LN+ V I+  D R     + +P+    FY+GGI  +V Y++  K
Sbjct: 181 EFDYDTIARRLRELAYLNAGVDITFTDYRLDLIKADKPQVSHYFYEGGIREYVEYINNEK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +PL    I +   ++ + ++ A++W  D + +N++ F NNI   DGGTHL GL++ LTR 
Sbjct: 241 EPLHPDVIYVNSDKNGVQVEAALQWCGDAFSDNLMGFANNIRTVDGGTHLEGLKTVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +     K    K  + ++ G++ REG T+V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 MNVIARKRKKRKDTESNMAGENIREGLTAVVSVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +L+ +P  A  I++K + A    +AA++ARDL RRK VL+ ++LPGKL+DCS 
Sbjct: 361 VGEALTEYLDFNPSVADAILEKAIQAFNAAEAAKKARDLVRRKSVLESSTLPGKLSDCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP +SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + E+ +LIT
Sbjct: 421 RDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GI  + F  + LRYH+I +MTDADVDGAHIRTLLLTFF+R    L+  G++YI  P
Sbjct: 481 ALGLGIKGEDFAPDTLRYHRICLMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598
           PLY + RGK+  Y   E+ L+D +     + +         G +    L +       ++
Sbjct: 541 PLYKLERGKNHTYCYSEKELQDGIDAMPTNAKYNIQRFKGLGEMMPQQLWDT-----TMN 595

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +       +   E   I  V   +               RLN 
Sbjct: 596 PETRTLKRVEIEDAAEADRIFTVLMGDRV-APRRDFIETYGPRLNM 640



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 10/131 (7%)

Query: 681 SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKITGPCSL---LDTIFSIGRKGIS 735
            + +F  +Y+R   ++  I      +  L    +         L   +D + +  +   +
Sbjct: 517 LLLTFFYRYQRDLVDQGYIYIACPPLYKLERGKNHTYCYSEKELQDGIDAMPTNAK--YN 574

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEM   QLW+TT+NP+TR+L RV+I DA++AD +F+ LMGD V PRR+FI+  
Sbjct: 575 IQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAEADRIFTVLMGDRVAPRRDFIETY 634

Query: 796 S--LP-SALDI 803
              L  + LDI
Sbjct: 635 GPRLNMADLDI 645


>gi|15612569|ref|NP_240872.1| DNA gyrase subunit B [Bacillus halodurans C-125]
 gi|4033396|sp|O50627|GYRB_BACHD RecName: Full=DNA gyrase subunit B
 gi|2760177|dbj|BAA24187.1| B subunit of DNA gyrase [Bacillus sp.]
 gi|5672652|dbj|BAA82690.1| 78%-identity [Bacillus halodurans]
 gi|10172618|dbj|BAB03725.1| DNA gyrase subunit B [Bacillus halodurans C-125]
          Length = 637

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 296/591 (50%), Positives = 404/591 (68%), Gaps = 8/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +  +YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE++ G+
Sbjct: 1   MTR--EQQAYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNSIDEAMAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +  D S TV+DNGRGIP  +H++ G  A EVIMT LHAGGKF    YKVSGGL
Sbjct: 58  CDEIGVVIEEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ L++ + REG ++   F  G+    L V G   + TGT++ F P  D
Sbjct: 118 HGVGASVVNALSTMLEVEVHREGKVHYQKFHRGVPAADLEVIG-TTDRTGTKIHFKPDGD 176

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    F YDTL  RLREL+FLN  ++I + D R  E  +    Y+GGI +FV +L+R 
Sbjct: 177 IFTETTVFEYDTLASRLRELAFLNKGLRIKITDMREEEKSDE-FHYEGGIASFVEHLNRT 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++ L ++PI I+G +  + +++A+++NDG+  N+  F NNI   +GGTH SG ++ LTR 
Sbjct: 236 RETLHETPIHIEGEKQGVYVEIAVQYNDGFTSNIYSFANNINTHEGGTHESGFKTGLTRV 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K    K+   ++ G+D REG T+++S+K+PDP+F  QTK KL +SE R++ +S 
Sbjct: 296 INDYARKHNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSL 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             +  S +L EHP  A+ +V K L AS  R+AA++AR+LTRRK  L+++SLPGKLADCS 
Sbjct: 356 FTEHFSRFLIEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSS 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RD   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L++ EI  +IT
Sbjct: 416 RDASISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIIT 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG D FDI K RYHKIIIMTDADVDGAHIRTL+LTFF+R M  LI +G++YI +P
Sbjct: 476 ALGTGIG-DDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PLY + +GK +QY   +  L++ L       +         G ++ + L  
Sbjct: 535 PLYKVQQGKDIQYAYGDAELQEILSQLPDKAKPGIQRYKGLGEMNPSQLWE 585



 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 98/450 (21%), Positives = 168/450 (37%), Gaps = 51/450 (11%)

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL------R 454
           R   L   +   ++     R+ +KS+ F  EG  A       R+RE     P+      +
Sbjct: 192 RLRELAFLNKGLRIKITDMREEEKSDEFHYEGGIASFVEHLNRTRETLHETPIHIEGEKQ 251

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK----------LRYHKIIIMT 504
           G  + +     D   S+  I +    + T  G       K           R H +   +
Sbjct: 252 GVYVEIAVQYNDGFTSN--IYSFANNINTHEGGTHESGFKTGLTRVINDYARKHNLFKES 309

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEES 558
           D ++ G  +R  L      ++P     G           +     +      +++ +   
Sbjct: 310 DPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSRFLIEHPQ 369

Query: 559 LEDYLINQSLSEEIELFCDSKG--------VISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
           +   L+++ L          K          +  + L   + D    D  I + Y     
Sbjct: 370 VARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISEIYIVEGD 429

Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILV 664
           +    A      + ++   +   + +    RL+ I   +E          G  ++ DI  
Sbjct: 430 SAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGIGDDFDIEK 489

Query: 665 KRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNRIE-ENYLTILSLICNGDKIKIT- 717
            R  + +      ++G+ I +    F  +Y R              L  +  G  I+   
Sbjct: 490 ARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKDIQYAY 549

Query: 718 ---GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                  +L  +    + G  +QRYKGLGEMN SQLWETT++P  R++L+V + DA +AD
Sbjct: 550 GDAELQEILSQLPDKAKPG--IQRYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKAD 607

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           ++F  LMGD VEPRR+FIQEN+     LDI
Sbjct: 608 EIFEILMGDRVEPRRDFIQENARYVKNLDI 637


>gi|87123248|ref|ZP_01079099.1| DNA gyrase, B subunit [Synechococcus sp. RS9917]
 gi|86168968|gb|EAQ70224.1| DNA gyrase, B subunit [Synechococcus sp. RS9917]
          Length = 705

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 286/638 (44%), Positives = 399/638 (62%), Gaps = 19/638 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MSEASKVQAAYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I V L  DGS +V+DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCSEIEVVLGDDGSASVTDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L            TGT V F 
Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAPIGSLASAPQPVEEKGRTGTSVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229
           P  +IF+    F+Y TL  RLREL++LN  V+I   D+R        +  E   FY+GGI
Sbjct: 180 PDLEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESALNAEGDAHEEVYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y++  K PL    I +   +D + ++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVAYMNAEKDPLHPEIIYVNAEKDGVQVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++ +K    K+   ++ G++ REG T+VLS+K+P+P F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNAFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPSVIDMILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    ++
Sbjct: 420 TLPGKLADCSSRDPAESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDARI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD   LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQALITALGLGIKGEDFDAKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  GF+YI  PPLY + RGK+  Y  +E+ L+  L                 G +    L
Sbjct: 540 VEGGFIYIACPPLYKVERGKNHTYCYNEQDLQTTLAGFGEKANYNIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
                    +D   +       +  +E   I  +   +
Sbjct: 600 WET-----TMDPTTRLMKRVEIEDALEADRIFTILMGD 632



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 125/322 (38%), Gaps = 29/322 (9%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561
           +D+++ G +IR  L      ++P     G     +    + GI      + +        
Sbjct: 324 SDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEALSQYLEFNP 383

Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616
            +I+  L + I+ F  ++      +L  R  + ++  +   + D         + +I + 
Sbjct: 384 SVIDMILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPAESEIYIVEG 443

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDI 662
             +G    +       ++       LN       + +  +                + D 
Sbjct: 444 DSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDARIYKNTEIQALITALGLGIKGEDFDA 503

Query: 663 LVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNGDKIK- 715
              R  R V      ++G+ I +    +   +   + E          L  +  G     
Sbjct: 504 KNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGFIYIACPPLYKVERGKNHTY 563

Query: 716 ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                 L  T+   G K   ++QR+KGLGEM   QLWETT++P TR + RV+I DA +AD
Sbjct: 564 CYNEQDLQTTLAGFGEKANYNIQRFKGLGEMMPKQLWETTMDPTTRLMKRVEIEDALEAD 623

Query: 775 DLFSRLMGDEVEPRREFIQENS 796
            +F+ LMGD+V PRREFI+  +
Sbjct: 624 RIFTILMGDKVAPRREFIETTA 645


>gi|254495273|ref|ZP_05108197.1| DNA gyrase subunit B [Polaribacter sp. MED152]
 gi|85819627|gb|EAQ40784.1| DNA gyrase subunit B [Polaribacter sp. MED152]
          Length = 645

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 286/622 (45%), Positives = 407/622 (65%), Gaps = 13/622 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +  SYDA SIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MSEE-KKHSYDASSIQALEGMEHVRMRPSMYIGDV-GIRGLHHLVYEVVDNSIDEAMGGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D S T  DNGRGIP  LHK+EG+SA +V+MT++ AGGKF++ SYKVSGGL
Sbjct: 59  CDTIEVTINEDNSITTKDNGRGIPVGLHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L   + +EG I++  +  G    P+   G   + TGT VTFLP   
Sbjct: 119 HGVGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGDT-DFTGTIVTFLPDKS 177

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235
           IF+   ++NY+TL  R+REL++LN  + I+L DKR+ +        T     G+  F+ Y
Sbjct: 178 IFTQSTEYNYETLATRMRELAYLNKGITITLTDKRNKDDEGNFISETFHSNKGLPEFIEY 237

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD  ++ L+ + I ++G ++ I +++AM +N  Y EN+  + NNI   +GGTHLSG R  
Sbjct: 238 LDSTREQLIANVISMEGEKNGIPVEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGFRRG 297

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y ++S   K  K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 298 LTGTLKKYADESGLLKNVKFDIAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVTSA 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L+ +LEE+P +AK IV+KV+ A+  R AAR+ARD+ +RK V+ I  LPGKL+
Sbjct: 358 VSQAVSEMLTDYLEENPNDAKTIVQKVILAATARHAARKARDMVQRKSVMSIGGLPGKLS 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 418 DCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 477

Query: 476 TLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +      +++K+RYHK++IM DADVDG+HI TL+LTFFFR M  ++  
Sbjct: 478 NMFTALGVSIGTEEDPRALNLSKIRYHKVVIMCDADVDGSHIATLILTFFFRYMKEMVEQ 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI  PPLY + +G+  QY  D++  +        S  I+ +     + ++      +
Sbjct: 538 GYIYIATPPLYLVKKGQKRQYAWDDDQRDLIAQQMGGSVTIQRYKGLGEMNAEQLWDTTM 597

Query: 592 D-DALKIDKLIKDFYPNHDKTF 612
           + +   + K++ D     D+ F
Sbjct: 598 NPEFRTLRKVVIDSPTEADRVF 619



 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 7/129 (5%)

Query: 679 GSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGI 734
            + I +F  +Y +    +         L L+  G K +         L+          +
Sbjct: 520 ATLILTFFFRYMKEMVEQGYIYIATPPLYLVKKGQKRQYAWDDDQRDLIAQQMGGS---V 576

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMNA QLW+TT+NP+ R+L +V I   ++AD +FS LMGDEV PRR+FI+ 
Sbjct: 577 TIQRYKGLGEMNAEQLWDTTMNPEFRTLRKVVIDSPTEADRVFSMLMGDEVPPRRDFIER 636

Query: 795 NSLPSALDI 803
           N+  + +D+
Sbjct: 637 NAKYANIDV 645


>gi|305664998|ref|YP_003861285.1| DNA gyrase subunit B [Maribacter sp. HTCC2170]
 gi|88707410|gb|EAQ99655.1| DNA gyrase subunit B [Maribacter sp. HTCC2170]
          Length = 646

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 288/601 (47%), Positives = 396/601 (65%), Gaps = 11/601 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+     +Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MSEEANKKNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D S T  DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDRIDVTINEDNSITTRDNGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  LK  + R+G I+E  +  G    P+   G    + GTEVTF P + 
Sbjct: 120 HGVGVSCVNALSDHLKATVFRDGKIWEQEYERGKSLYPVKSVGETK-ERGTEVTFHPDTT 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
           IF+    ++Y+TL +R+RELS+LN  V IS+ DKR      E    +     G++ FV +
Sbjct: 179 IFTQTIEYSYETLSNRMRELSYLNKGVTISITDKRQKDEKGEFVSESFVSTEGLKEFVRF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD +++ L Q  I ++G ++ I +++AM +N  Y EN+  + NNI   +GGTHLSG R  
Sbjct: 239 LDGNREALTQGVISMEGEKNGIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLSGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S    K K  V GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTSTLKKYADASGMLDKLKFEVQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVSSA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L+ +LEEHP +AKIIV+KV+ A+  R AA +AR++ +RK V+ I  LPGKL+
Sbjct: 359 VSQSVSEMLTNYLEEHPDDAKIIVQKVILAAQARHAATKAREMVQRKTVMSIGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS++DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 419 DCSDQDPVNCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTFFFR M  LI N
Sbjct: 479 NIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRELIEN 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI  PPLY + +G   +Y   +E  ++   + + S  I+ +     + ++      +
Sbjct: 539 GHVYIATPPLYLVKKGSKKRYAWSDEERDEIAESFNGSVGIQRYKGLGEMNAEQLWDTTM 598

Query: 592 D 592
           +
Sbjct: 599 N 599



 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 9/200 (4%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +    +  A   EK  +        +
Sbjct: 454 LPLRGKILNVEKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHK------V 507

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      V    +      F F    + I +  +       L L+  G K +        
Sbjct: 508 VIMCDADVDGSHIETLILTFFFRYMRELIENGHVY-IATPPLYLVKKGSKKRYAWSDEER 566

Query: 724 DTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           D I +    G + +QRYKGLGEMNA QLW+TT+NP+ R+L ++ I +A+++D +FS LMG
Sbjct: 567 DEI-AESFNGSVGIQRYKGLGEMNAEQLWDTTMNPEFRTLRQITIDNATESDRVFSMLMG 625

Query: 783 DEVEPRREFIQENSLPSALD 802
           DEV PRREFI++N++ + +D
Sbjct: 626 DEVPPRREFIEKNAVYANID 645


>gi|294781815|ref|ZP_06747148.1| DNA gyrase, B subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481925|gb|EFG29693.1| DNA gyrase, B subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 639

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 272/592 (45%), Positives = 390/592 (65%), Gaps = 8/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +N+   SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY
Sbjct: 1   MEENM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V +  D    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGL
Sbjct: 57  CNKIDVKILPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS WL++ +++EGN+Y   +  G  +  + + GS   N+ GT V F    
Sbjct: 117 HGVGVSVVNALSEWLEVEVRKEGNVYYQKYHRGKPEEDVKIIGSCEANEHGTTVRFKADG 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           DIF    +NY TL +RL+EL++LN  + I+L D R  E +E T  + GGI  F++ + + 
Sbjct: 177 DIFETLVYNYFTLSNRLKELAYLNRGLTITLSDLRKEEKKEETYKFNGGILDFLNEIVKE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +  ++  P  +   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ 
Sbjct: 237 EATIIDKPFYVSAEQDNVGVDVTFTYTTSQNETIYSFVNNINTHEGGTHVQGFRTALTKV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I    +     K     ++G+D REG  +++S K+P P+F  QTK KL +SEV  +V S 
Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEVSGIVNSI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V+  L  +LE++P   KI+V+K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ 
Sbjct: 357 VSSSLKIFLEDNPAITKIVVEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +  ++ E+F+VEG+SAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++T
Sbjct: 417 KKAEECEIFIVEGNSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GT IG D+FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M  LI+ G +YI  P
Sbjct: 477 AFGTSIG-DTFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMRELINEGNIYIACP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           PLY ++ GK + Y  ++  L++ L   +   +          G ++   L  
Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNVLAQMNQDNKKYTIQRYKGLGEMNPEQLWE 587



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 103/266 (38%), Gaps = 9/266 (3%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +    +        +      +             +   FI +        K
Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGNSAGGSAK 437

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                +++  +   +   + N E         +S++   +         ++  S      
Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGDTFDISKLRYGK 495

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           ++      V    +   + I +F  +Y R   N              +  K  I     L
Sbjct: 496 IILMTDADVDGAHI--RTLILTFLYRYMRELINEGNIYIACPPLYKVSSGKQIIYAYNDL 553

Query: 723 -LDTI---FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            L  +    +   K  ++QRYKGLGEMN  QLWETT+NPD R LL+V + +A +AD LF 
Sbjct: 554 ELKNVLAQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSVDNAREADMLFD 613

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           +LMGD+VEPRREFI+E++     +DI
Sbjct: 614 KLMGDKVEPRREFIEEHAEYVKNIDI 639


>gi|229496104|ref|ZP_04389826.1| DNA gyrase, B subunit [Porphyromonas endodontalis ATCC 35406]
 gi|229317000|gb|EEN82911.1| DNA gyrase, B subunit [Porphyromonas endodontalis ATCC 35406]
          Length = 653

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 295/604 (48%), Positives = 389/604 (64%), Gaps = 17/604 (2%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD      +   Y A SIQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+
Sbjct: 1   MSDENNKSTEQQEYSAGSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L GY   + VT+  D S +V DNGRGIP D+H +EG SA EV+MT LHAGGKF++ SYKV
Sbjct: 60  LAGYCTDVKVTILEDNSISVEDNGRGIPVDIHPKEGRSALEVVMTVLHAGGKFDKGSYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVS VNALS+ L+  + R+G  +   F  G     +   G + + TGT VTF 
Sbjct: 120 SGGLHGVGVSCVNALSTHLRADVYRDGKHFVQEFSKGKPLYSVKEEGES-DRTGTTVTFT 178

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAF 232
           P + IF+V  + +  L HRLREL+FLN+ +++SL D R  +          + + G++ F
Sbjct: 179 PDNSIFTVSIYQFKILAHRLRELAFLNAGLRLSLTDLRERDEEGNPLTEVFYSEDGLKEF 238

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V ++D+ K  L+   I I+  +  + I++AM +N  Y ENV  + N+I   +GGTHL+G 
Sbjct: 239 VRFIDQSKVNLLDDVIHIKNDKGEVPIEVAMTYNQDYQENVYSYVNDINTIEGGTHLTGF 298

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR +  Y   S   +K K +V GDD REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 RRALTRTLKQYATDSKMLEKVKVNVEGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
             +VES V++ L+ +LEEHP +AK IV KV+ A+  R AA  AR L  RK  L    LPG
Sbjct: 359 IGIVESAVSEALAIYLEEHPQQAKAIVDKVVLAAQARHAAANARKLVLRKSPLAAGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL+DC+ +DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+L SQ
Sbjct: 419 KLSDCTSKDPAKCEIFLVEGDSAGGTAKQGRDRMYQAILPLRGKILNVEKAMQHKVLDSQ 478

Query: 473 EIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           EI  + TALG  IG +        +KLRYHKIIIMTDADVDG+HI TL+LTFFFR M SL
Sbjct: 479 EIRNIYTALGVTIGTEEDSKALNLSKLRYHKIIIMTDADVDGSHIATLILTFFFRNMRSL 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKN 585
           I NG++Y+  PPLY   +GK   Y   E+    ++   +   E           G + + 
Sbjct: 539 IDNGYVYLATPPLYLCRKGKEQAYCWTEQQRRAFIDKYADGNESRVHVQRYKGLGEMMEE 598

Query: 586 DLRN 589
            L  
Sbjct: 599 QLWE 602



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           +  R  + +QRYKGLGEM   QLWETT+NPD R L ++ I  A+ AD  FS LMG++V P
Sbjct: 580 NESR--VHVQRYKGLGEMMEEQLWETTMNPDNRILKQITIESAASADRTFSMLMGEDVPP 637

Query: 788 RREFIQENSLPSALD 802
           RREFI++N+  + +D
Sbjct: 638 RREFIEDNATYARID 652


>gi|220927465|ref|YP_002504374.1| DNA gyrase subunit beta [Clostridium cellulolyticum H10]
 gi|219997793|gb|ACL74394.1| DNA gyrase, B subunit [Clostridium cellulolyticum H10]
          Length = 642

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 291/593 (49%), Positives = 405/593 (68%), Gaps = 7/593 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD   NS YD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++ N+IDE+L G 
Sbjct: 1   MSDINNNSIYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVANSIDEALAGR 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            DII V ++ D S TV+DNG GIP  +H + GI   EV+ T LHAGGKF   +Y VSGGL
Sbjct: 60  CDIIKVIVHKDNSVTVTDNGSGIPVGIHPKMGIPTLEVVHTILHAGGKFGSGAYSVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  +++ +KREG+IY   +  G     + + G   ++TGT  TF P  +
Sbjct: 120 HGVGASVVNALSESMEVEVKREGHIYRQKYSRGKPLTSVDIVGDT-DETGTITTFKPDPE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +++D +  R RE++FLN  + I LID+R  E  E  + Y+GGI +FV YL++ K
Sbjct: 179 IFEEIVYDFDAMISRYREMAFLNKGINIKLIDERPEESVEKNLHYEGGIISFVEYLNKSK 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL    I ++GSRD   +++AM++ND Y+E+V  + NNI   +GGTHL+G R+A+T+ +
Sbjct: 239 EPLHDEVIYLEGSRDANIVEVAMQYNDSYNESVFTYANNIATTEGGTHLTGFRAAITKVL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K++ +++ G+D REG T+VLS+K+P+P+F  QTK KL +SE+R++VE+ V
Sbjct: 299 NDYARKFNILKENDKNLSGEDVREGLTAVLSVKLPEPQFEGQTKTKLGNSEIRTLVENVV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +D L  +LEEHP  AKII+ K + A+  R+AAR+AR+LTRRK  +D ++LPGKLADCSE+
Sbjct: 359 SDKLFIFLEEHPAVAKIILDKSITAARAREAARKARELTRRKSAMDSSTLPGKLADCSEK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP K+E+F+VEGDSAGGSAKQGR R+ QAILPL GK+LNVE++R DK+  ++++  +I A
Sbjct: 419 DPTKTEIFIVEGDSAGGSAKQGRDRKIQAILPLWGKMLNVEKSRMDKVYDNEKLSPVIIA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG D FD +KLRY KIIIM DADVDG+HIR LLLTFFFR M  L+  G +YI  PP
Sbjct: 479 LGAGIG-DEFDTSKLRYDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQGHVYIAMPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKNDLRN 589
           L+ + +GK   Y  D+  L+     +   ++            G ++ + L  
Sbjct: 538 LFKVYKGKEEYYAYDDIELDKIFKERGWRKDDPNVNIQRFKGLGEMNPDQLWE 590



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 11/191 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    KL+  +  +       +  S    D ++      V    +    
Sbjct: 455 MLNVEKSRMDKVYDNEKLSPVIIALGAGIGDEFDTSKLRYDKIIIMADADVDGSHIRMLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG------- 733
             F F      +    +      +  +    ++         LD IF    +G       
Sbjct: 515 LTFFFRYMRPLVEQGHVYIAMPPLFKVYKGKEEYYAYDDIE-LDKIFKE--RGWRKDDPN 571

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +++QR+KGLGEMN  QLWETT+NP+TR++++V + DA  AD++F + MGD+VEPRRE+IQ
Sbjct: 572 VNIQRFKGLGEMNPDQLWETTMNPETRTIIKVDLEDAISADEVFCKFMGDKVEPRREYIQ 631

Query: 794 ENSLPS-ALDI 803
            ++     LDI
Sbjct: 632 MHARDVSNLDI 642


>gi|325287192|ref|YP_004262982.1| DNA gyrase subunit B [Cellulophaga lytica DSM 7489]
 gi|324322646|gb|ADY30111.1| DNA gyrase, B subunit [Cellulophaga lytica DSM 7489]
          Length = 646

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 279/601 (46%), Positives = 401/601 (66%), Gaps = 11/601 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    ++Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MSEEANKNNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V +N DGS T  DNGRGIP  LHK+EG+SA +V+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDNISVVINEDGSITTKDNGRGIPVGLHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS+ LK  + REG I+E  +  G    P+   G    +TGT VTF P   
Sbjct: 120 HGVGVSCVNALSNSLKATVYREGKIWEQEYERGKALYPVKSIGETE-ETGTIVTFYPDDT 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGIEAFVSY 235
           IF+    +NY+TL +R+REL++LN  V IS+ DKR  + +        + + G++ F+ +
Sbjct: 179 IFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKGEFLSEVFYSEEGLKEFIKF 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD +++ L++  + ++G ++ I +++AM +N  Y EN+  + NNI   +GGTHLSG R  
Sbjct: 239 LDGNREQLIREVVSMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHEGGTHLSGFRRG 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 299 LTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVSSA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L+ +LEE+P +AK+IV+KV+ A+  R AA +AR++ +RK V+ I  LPGKL+
Sbjct: 359 VSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMSIGGLPGKLS 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+D  K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 419 DCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 478

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LTFFFR M  LI  
Sbjct: 479 NIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTFFFRFMRELIEG 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI  PPLY + +G   +Y  +++  ++   + + S  I+ +     + ++      +
Sbjct: 539 GHVYIATPPLYLVKKGTKKRYAWNDKERDEIADSFNGSVGIQRYKGLGEMNAEQLWDTTM 598

Query: 592 D 592
           +
Sbjct: 599 N 599



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 7/199 (3%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +    +  A   +K      +   I+
Sbjct: 454 LPLRGKILNVEKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLDK---LRYHKVVIM 510

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
                 G   + ++            + +            L L+  G K +        
Sbjct: 511 CDADVDGSHIETLILTFFFRFM----RELIEGGHVYIATPPLYLVKKGTKKRYAWNDKER 566

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D I       + +QRYKGLGEMNA QLW+TT+NPD R+L +V I +A+++D +FS LMGD
Sbjct: 567 DEIADSFNGSVGIQRYKGLGEMNAEQLWDTTMNPDFRTLRQVTIENATESDRIFSMLMGD 626

Query: 784 EVEPRREFIQENSLPSALD 802
           EV PRREFI++N++ + +D
Sbjct: 627 EVPPRREFIEKNAVYANID 645


>gi|227485761|ref|ZP_03916077.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236316|gb|EEI86331.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
          Length = 642

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 291/589 (49%), Positives = 405/589 (68%), Gaps = 8/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N   ++YDA +I++L+GL+ V+ RP MYIG T    GLHH++YEV+DN++DE+L G 
Sbjct: 9   MTEN---NNYDAGNIRVLEGLEPVRLRPGMYIGSTSS-RGLHHLVYEVVDNSVDEALAGR 64

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D   +V D+G GIP   H     S  E ++T LHAGGKF+  +YKVSGGL
Sbjct: 65  CDYIKVTINKDNVVSVEDDGSGIPVKEHPTTHKSTLETVLTVLHAGGKFDDSAYKVSGGL 124

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L   +KR+G++Y+M F  G +   + V G    +TGT++TF P  +
Sbjct: 125 HGVGVSVVNALSEYLIAEVKRDGHVYKMEFARGEVTKDIEVIGDTT-ETGTKITFKPDGE 183

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F    L++R RE++FLN  V+I   D+R  E  E +  ++GGI  FVS+L+R+K
Sbjct: 184 IFDTTIFERSILENRFREMAFLNKGVEIRFEDER--ENFETSFKFEGGISEFVSFLNRNK 241

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+M+      GS++ I ++ A ++ DGY EN+L + NNI   +GGTHLSGLRS+LTR +
Sbjct: 242 DPIMEMIPHFDGSQEGIEVEFAFQYTDGYSENILSYANNIQTPEGGTHLSGLRSSLTRSV 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K ++ ++ G+D REG T+++S+K+ DP+F  QTK KL +SEVR VV+S+V
Sbjct: 302 NDYARKYNFIKDNEENLQGEDIREGITAIISVKISDPQFEGQTKSKLGNSEVRGVVDSYV 361

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++ L+A+LEE+P  AK I+ K L +   R+AAR+ARDLTR++ +LD A+LPGKLADC   
Sbjct: 362 SEHLTAFLEENPKPAKSIIDKALASRRAREAARKARDLTRKRSILDSATLPGKLADCQST 421

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  ++E+F+VEG+SAGGSAK GR    QAILPLRGKI+NVE+A  DK+L+S+EI  +ITA
Sbjct: 422 DISENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKAHLDKVLNSEEIKNMITA 481

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGIG++ FDI+KLRY KIIIMTDADVDGAHIRTLLLTFF+R M  LI  G +Y+  PP
Sbjct: 482 FGTGIGKE-FDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKDLIDEGHVYVALPP 540

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I++GK  +YV  ++  + Y+     +          G ++   L  
Sbjct: 541 LYRISQGKKERYVYSDDEKDKYIKELGDATFKINRYKGLGEMNAEQLWE 589



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 78/186 (41%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      V  + ++ N +        K +  S      ++      V    +    
Sbjct: 458 IMNVEKAHLDKVLNSEEIKNMITAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLL 517

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I    +      +  +     +  +         I  +G     + RYK
Sbjct: 518 LTFFYRYMKDLIDEGHVYVALPPLYRISQGKKERYVYSDDEKDKYIKELGDATFKINRYK 577

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDEVEPRREFIQENSLP 798
           GLGEMNA QLWETT++PD R LLRV+  D      DD FS LMG++VEPRR FIQEN+  
Sbjct: 578 GLGEMNAEQLWETTMDPDRRVLLRVE-EDLESTTTDDTFSLLMGEKVEPRRNFIQENAKY 636

Query: 799 S-ALDI 803
              +D+
Sbjct: 637 VTDIDV 642


>gi|313204151|ref|YP_004042808.1| DNA gyrase subunit b [Paludibacter propionicigenes WB4]
 gi|312443467|gb|ADQ79823.1| DNA gyrase subunit B [Paludibacter propionicigenes WB4]
          Length = 654

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 288/626 (46%), Positives = 407/626 (65%), Gaps = 16/626 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +    +++Y A SIQ+L+GL+AV+KRP+MYIGD  G  GLHH++YEV+DN+IDE++ G+ 
Sbjct: 7   AKEAASANYGASSIQVLEGLEAVRKRPAMYIGDI-GIKGLHHLVYEVVDNSIDEAMAGHC 65

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +N + S TV DNGRGIP D+H++EG SA EV+MT LHAGGKF++ SYKVSGGLH
Sbjct: 66  NNIQVFINENNSITVIDNGRGIPVDMHEKEGKSALEVVMTVLHAGGKFDKDSYKVSGGLH 125

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVS VNALS+++++ + R G +Y   +  GI   P+   G++  +  T+ TFLP   I
Sbjct: 126 GVGVSCVNALSTYVRVEVSRNGKLYMQEYSCGIPKAPVQEIGTSTTNG-TKTTFLPDDSI 184

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLD 237
           F    + YD L  RLREL+FLN+ + ++L DKR        +        G++ FV Y+D
Sbjct: 185 FIESIYKYDILAGRLRELAFLNAGITLTLTDKRQLNDDGSFKTEVFHSDEGLKEFVEYID 244

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             ++PL++S I I   ++ I +++AM +N  Y+EN+  + NNI   +GGTHL+G R  LT
Sbjct: 245 EAREPLIESVIHISTEKNGIPVEIAMTYNTSYNENIHSYVNNINTIEGGTHLAGFRRGLT 304

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +  Y E S   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV   V+
Sbjct: 305 RTLKKYAEDSKMLEKLKIEISGDDFREGLTAVISIKVQEPQFEGQTKTKLGNNEVMGSVD 364

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V + L  +LEE+P  A+IIV+KV+ A+  R AAR+AR++ +RK  L    LPGKLADC
Sbjct: 365 MAVGEALGNYLEENPKAARIIVEKVILAATARYAARKAREMVQRKSPLSGGGLPGKLADC 424

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           +++DP+K ELFLVEGDSAGG+AKQGRSR+ QAILPLRGKILNVE+A   K+L S+EI  +
Sbjct: 425 ADKDPEKCELFLVEGDSAGGTAKQGRSRQFQAILPLRGKILNVEKAMQHKVLESEEIRNI 484

Query: 478 ITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
            TALG  IG +      ++ KLRYHK+IIMTDADVDG+HI TL++TFFFR M  LI  G+
Sbjct: 485 YTALGVTIGTEDDSKALNMKKLRYHKVIIMTDADVDGSHIATLIMTFFFRHMKELIEQGY 544

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LYI  PPLY   +GK  +Y   E   + ++       +  +       + +      +++
Sbjct: 545 LYIATPPLYLCKKGKVEEYCWTEAQRQTFIEKYGGGTDSGIHTQRYKGLGE------MNE 598

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVIS 619
               D  +   +    +  IE A  +
Sbjct: 599 IQLWDTTMNPEHRTLRQVNIENAAEA 624



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 13/161 (8%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-----RIFSNRIEENYLTILS--- 706
           G+ ++S  L  +  R  +   + +     S  +        R     IE+ YL I +   
Sbjct: 493 GTEDDSKALNMKKLRYHKVIIMTDADVDGSHIATLIMTFFFRHMKELIEQGYLYIATPPL 552

Query: 707 LICNGDKIKITGPCSLL--DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRS 761
            +C   K++            I   G     GI  QRYKGLGEMN  QLW+TT+NP+ R+
Sbjct: 553 YLCKKGKVEEYCWTEAQRQTFIEKYGGGTDSGIHTQRYKGLGEMNEIQLWDTTMNPEHRT 612

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           L +V I +A++AD +FS LMGD+V PRR+FI++N+  + +D
Sbjct: 613 LRQVNIENAAEADHVFSMLMGDDVAPRRQFIEQNATYAKID 653


>gi|325279486|ref|YP_004252028.1| DNA gyrase, B subunit [Odoribacter splanchnicus DSM 20712]
 gi|324311295|gb|ADY31848.1| DNA gyrase, B subunit [Odoribacter splanchnicus DSM 20712]
          Length = 654

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 296/605 (48%), Positives = 388/605 (64%), Gaps = 18/605 (2%)

Query: 1   MSDNIQNSS--YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+ I+ +   Y ADSIQ+L+GL+AV+ RPSMYIGD +   GLHH++YEV+DN+IDE+L 
Sbjct: 1   MSEEIEKNEREYSADSIQVLEGLEAVRMRPSMYIGDVN-VKGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+ D I VT+N D S +V DNGRGIPT  H +E  SA EV+MT LHAGGKF++ SYKVSG
Sbjct: 60  GFCDHIQVTINEDNSISVRDNGRGIPTARHSKENKSALEVVMTVLHAGGKFDKDSYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS+ L   I REG I+   +  GI    + V G   + TGT +TFLP 
Sbjct: 120 GLHGVGVSCVNALSTTLIAEIHREGKIWRQEYHKGIPAGDVQVVGDT-DRTGTTITFLPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFV 233
             IF V ++ YD L  RLREL++LN  +++SL DKR  +     PR    F + G+  FV
Sbjct: 179 DTIFYVTEYKYDILSARLRELAYLNKGIRLSLTDKREIDPETNAPRHEVFFSQHGLSEFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YLD  ++ L++  I I   ++ I +++A+ +N G+ ENV  + NNI   +GGTHL+G +
Sbjct: 239 EYLDNTREKLIEDTIDIATEKNGIPVEVALHYNTGFSENVFSYVNNINTIEGGTHLTGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             LT  + +Y E      K K  +  DD REG T+V+S+K+ +P+F  QTK KL ++EV 
Sbjct: 299 RGLTTTLKAYAESHGMLSKLKFDINSDDFREGLTAVISVKVAEPQFEGQTKTKLGNTEVG 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + V   V+  L  +LEE+P EAK IV KV+ A+  R AAR+ARDL +RK VL  + LPGK
Sbjct: 359 TAVSQAVSTVLENYLEENPREAKAIVDKVILAATARHAARKARDLVQRKTVLSGSGLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS+ DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   ++  S E
Sbjct: 419 LADCSDNDPAKCEIFLVEGDSAGGTAKQGRDRRYQAILPLRGKILNVEKAMMHRVYESDE 478

Query: 474 IGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  +  ALG  IG           KLRYHKI+IM DADVDGAHI TL++T FFR M  +I
Sbjct: 479 IKIIFQALGITIGTQEDSKAVNLEKLRYHKIVIMADADVDGAHIATLIMTLFFRFMRPVI 538

Query: 530 HNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEE----IELFCDSKGVISK 584
            NG+LYI  PPLY + +G    +Y   ++ LE  +   S  +             G +SK
Sbjct: 539 ENGYLYIATPPLYSVKKGNKEQRYCWTDKELEQLVNEMSNGKGDAGLHIQRYKGLGEMSK 598

Query: 585 NDLRN 589
             L  
Sbjct: 599 EQLWE 603



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 8/107 (7%)

Query: 703 TILSLICNGDKIKIT-----GPCSLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTL 755
             L  +  G+K +           L++   S G+   G+ +QRYKGLGEM+  QLWETT+
Sbjct: 548 PPLYSVKKGNKEQRYCWTDKELEQLVNE-MSNGKGDAGLHIQRYKGLGEMSKEQLWETTM 606

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +P+ R L +V I +A+ AD +FS LMGD+V PRR+FI++N+  + +D
Sbjct: 607 SPENRILRQVSIENAADADRIFSMLMGDDVPPRRQFIEQNATYATID 653


>gi|160914817|ref|ZP_02077031.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991]
 gi|158433357|gb|EDP11646.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991]
          Length = 648

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 281/638 (44%), Positives = 404/638 (63%), Gaps = 12/638 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +   + SY AD IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L G+
Sbjct: 12  MENGKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGF 70

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I + +  D    V DNGRG+P  + ++ GIS  E I T LHAGGKF   +YKVSGGL
Sbjct: 71  ATDIEIAIEKDNVIRVEDNGRGMPVGIVEKTGISGVETIFTVLHAGGKFGGGAYKVSGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ + + G  + + F N G     L V G   +  G+ V F   +
Sbjct: 131 HGVGASVVNALSEWLEVTVHQNGKKHFLRFENGGKPSGALKVIGDT-DKHGSVVRFKADA 189

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF+    +++DTL  R+R+L+FLN  +++ +ID+R  E + I   Y GGI  +V YL++
Sbjct: 190 SIFTETQVYSFDTLNTRIRQLAFLNKGIRLVIIDEREEEAKRIEYKYDGGIRQYVEYLNK 249

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  L +  I ++G  + I  ++A+++NDGY  N+  F NNI   +GGTH  G R ALTR
Sbjct: 250 NKNVLHEDVIYVEGLEEGILAEVALQYNDGYMPNIYSFCNNINTMEGGTHEDGFRLALTR 309

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y  ++    K   ++ GDD REG T+++S+K PDP++  QTK KL +SEVR +V  
Sbjct: 310 VINAYARENN-LIKKDETLAGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIVSG 368

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D L  +L E+P  AKIIV+K + AS  R AA++AR+LTRRK  L+I SLPGKLADCS
Sbjct: 369 ILGDQLERFLIENPTTAKIIVEKGVLASKARMAAKKARELTRRKSALEITSLPGKLADCS 428

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  + E+++VEGDSAGGSAKQGR+ + QAILPLRGKILNVE+AR  ++  + EI +++
Sbjct: 429 SKDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKARLHRIFENNEIRSMV 488

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA G GIG +  DI+KLRYHKI+IMTDADVDGAHI TL+LTFF+R +  +I  G++YI  
Sbjct: 489 TAFGCGIGDEI-DISKLRYHKIVIMTDADVDGAHICTLMLTFFYRFLRPVIEGGYVYIAM 547

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPL+ + +G  ++YV  EE +E        +  ++ +    G ++   L         +D
Sbjct: 548 PPLFKVAKGNRVEYVYKEEEMERVRAEMGENVNVQRY-KGLGEMNPEQLWET-----TMD 601

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              +     + +  +E   I  +   E  +     +  
Sbjct: 602 PAFRTLKQVNIEDAVEADAIFEMLMGEEVEPRREFIQE 639



 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/101 (45%), Positives = 68/101 (67%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
             L  +  G++++       ++ + +   + +++QRYKGLGEMN  QLWETT++P  R+L
Sbjct: 548 PPLFKVAKGNRVEYVYKEEEMERVRAEMGENVNVQRYKGLGEMNPEQLWETTMDPAFRTL 607

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            +V I DA +AD +F  LMG+EVEPRREFIQEN+  + LDI
Sbjct: 608 KQVNIEDAVEADAIFEMLMGEEVEPRREFIQENAKYATLDI 648


>gi|237738561|ref|ZP_04569042.1| DNA gyrase subunit B [Fusobacterium sp. 2_1_31]
 gi|229424044|gb|EEO39091.1| DNA gyrase subunit B [Fusobacterium sp. 2_1_31]
          Length = 639

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/592 (45%), Positives = 387/592 (65%), Gaps = 8/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + +   SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY
Sbjct: 1   MEEKM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V +  D    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGL
Sbjct: 57  CNKIDVKILPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS WL++ +++EGN+Y   +  G  +  + + GS   ++ GT V F    
Sbjct: 117 HGVGVSVVNALSEWLEVEVRKEGNVYYQKYHRGKPEEDVKIIGSCEASEHGTTVRFKADG 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           DIF    +NY TL +RL+EL++LN  + I+L D R  E +E T  + GGI  F++ + + 
Sbjct: 177 DIFETLVYNYFTLSNRLKELAYLNRGLTITLSDLRKDEKKEETYKFDGGILDFLNEIVKE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +  ++  P  +   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ 
Sbjct: 237 ETTIIDKPFYVSAEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I    +     K     ++G+D REG  +++S K+P P+F  QTK KL +SEV  +V + 
Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L  +LE++P   KI+V+K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ 
Sbjct: 357 VSNSLKIFLEDNPAITKIVVEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +  ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++T
Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GT IG+  FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M  LI  G +YI  P
Sbjct: 477 AFGTSIGET-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           PLY +  GK + Y  ++  L++ L   +   +          G ++   L  
Sbjct: 536 PLYKVASGKQIIYAYNDLELKNILAQMNQENKKYTIQRYKGLGEMNPEQLWE 587



 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 102/266 (38%), Gaps = 9/266 (3%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +    +        +      +             +   FI +        K
Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 437

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                +++  +   +   + N E         +S++   +        +++  S      
Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 495

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPC 720
           ++      V    +   + I +F  +Y +                     K  I      
Sbjct: 496 IILMTDADVDGAHI--RTLILTFLYRYMKDLITEGNIYIACPPLYKVASGKQIIYAYNDL 553

Query: 721 SLLDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            L + +   +   K  ++QRYKGLGEMN  QLWETT+NPD R LL+V I +A +AD LF 
Sbjct: 554 ELKNILAQMNQENKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFD 613

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           +LMGD+VEPRREFI+E++     +DI
Sbjct: 614 KLMGDKVEPRREFIEEHAEYVKNIDI 639


>gi|119355886|ref|YP_910530.1| DNA gyrase subunit B [Chlorobium phaeobacteroides DSM 266]
 gi|119353235|gb|ABL64106.1| DNA gyrase subunit B [Chlorobium phaeobacteroides DSM 266]
          Length = 643

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 289/596 (48%), Positives = 399/596 (66%), Gaps = 12/596 (2%)

Query: 1   MSDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M + +    S Y A +IQIL G++ V+KRP+MYIGD     GLHH+IYE++DN+IDE+L 
Sbjct: 1   MQETVPQAPSPYIASNIQILDGIEHVRKRPAMYIGDIH-TRGLHHLIYEIVDNSIDETLG 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+ + I V+LN DGS TV D+GRGIP D+H ++  SA E++MT + AGGKF++ SYKVSG
Sbjct: 60  GFNEYIFVSLNPDGSVTVIDHGRGIPVDIHPQKQKSALELVMTVIGAGGKFDKGSYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG SVVNALS W ++ + R+G  Y   F  G+    +   G + +  GT+ TF P 
Sbjct: 120 GLHGVGASVVNALSEWCEVEVYRDGKAYFQRFERGVPQGNVREIGLS-DQKGTKTTFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + IF   +F  D +  R+REL+FLN ++ I++   +  +  +    Y+GG++ FV + D 
Sbjct: 179 NLIFKTTEFRKDIIIDRMRELAFLNKNLSITV---QDADGAQEIFHYEGGLKEFVRFTDI 235

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           ++  L++ PI   G RD   +++A+++ND Y ENV  + NNI   +GGTH++G R ALTR
Sbjct: 236 NRLSLIKEPIYFIGERDTTIVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y +K+   K  K S+ GDD +EG T+V+S+K+ +P+F  QTK KL +SE +S+VES
Sbjct: 296 TLNLYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVEEPQFEGQTKTKLGNSETQSIVES 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            VN+ LS + E +P   K+I++KV  A+M R+AAR+A++LTRRK VL+ + LPGKLADCS
Sbjct: 356 IVNELLSEFAESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCS 415

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
             DP+  EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  KML ++EI T+I
Sbjct: 416 INDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTII 475

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALGT  G++ F   KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI  G +YI +
Sbjct: 476 LALGTSFGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVYIAQ 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY +  GK  QY  D+E           + +  +          G ++   L +
Sbjct: 536 PPLYLVKSGKDQQYAWDDEERNSITDTLKKMQKGKANIHIQRYKGLGEMNPEQLWS 591



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E+ +         ++      V    +      F F      I + ++       L L+
Sbjct: 483 GEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVY-IAQPPLYLV 541

Query: 709 CNGDKIKI-------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
            +G   +              L      G+  I +QRYKGLGEMN  QLW TT++P  RS
Sbjct: 542 KSGKDQQYAWDDEERNSITDTLKK-MQKGKANIHIQRYKGLGEMNPEQLWSTTMDPAHRS 600

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LL+V + +A +AD +FS LMGD+VEPRREFI++N+     LD+
Sbjct: 601 LLQVSVENAREADQIFSTLMGDKVEPRREFIEKNARYVRRLDV 643


>gi|326202777|ref|ZP_08192644.1| DNA gyrase, B subunit [Clostridium papyrosolvens DSM 2782]
 gi|325986854|gb|EGD47683.1| DNA gyrase, B subunit [Clostridium papyrosolvens DSM 2782]
          Length = 642

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 288/593 (48%), Positives = 402/593 (67%), Gaps = 7/593 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D    SSYD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++ N++DE+L G 
Sbjct: 1   MNDFNNTSSYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVANSVDEALAGR 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S TV+DNG GIP  +H + GI   EV+ T LHAGGKF   +Y VSGGL
Sbjct: 60  CDTIQVIVHKDNSITVTDNGSGIPVGIHPKMGIPTLEVVHTILHAGGKFGSGAYSVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  +++ +KREG+IY   +  G     + + G    D+GT  TF P  D
Sbjct: 120 HGVGASVVNALSESMEVEVKREGHIYRQKYSRGKPITSVEIIGETE-DSGTITTFKPDPD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F++D +  R RE++FLN  ++I LID+R  E  E  + Y+GGI +FV YL++ K
Sbjct: 179 IFEDIVFDFDVMITRYREMAFLNRGIKIQLIDQRPDEIIEKNLHYEGGIISFVEYLNKTK 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL    I  +G RD   +++AM++ND Y+E V  + NNI   +GGTHL+G RSA+T+ +
Sbjct: 239 EPLHDKVIYFEGIRDANIVEVAMQYNDNYNETVFSYANNIATTEGGTHLTGFRSAITKVL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    +++ +++ G+D REG T+V+S+K+P+P+F  QTK KL +SE+R++VE+ V
Sbjct: 299 NDYARKFNIIRENDKNLSGEDVREGLTAVISVKLPEPQFEGQTKTKLGNSEIRTLVENVV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +D L+ +LEE+P  AKII+ K L A+  RDAAR+AR+LTRRK  +D ++LPGKLADCSE+
Sbjct: 359 SDKLNIFLEENPAIAKIILDKSLTAARARDAARKARELTRRKSAMDSSTLPGKLADCSEK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP K+E+F+VEGDSAGGSAKQGR R+ QAILPL GK+LNVE++R DK+  ++++  +I A
Sbjct: 419 DPTKTEIFIVEGDSAGGSAKQGRDRKIQAILPLWGKMLNVEKSRLDKVFDNEKLAPVIIA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GIG D FD +KLRY KIIIM DADVDG+HIR LLLTFFFR M  L+  G +YI  PP
Sbjct: 479 LGAGIG-DEFDTSKLRYDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQGHVYIAMPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKNDLRN 589
           L+ + +GK   Y  D+  +     ++   ++            G ++ + L  
Sbjct: 538 LFKVYKGKDEYYAYDDRQVSKIFEDRGWRKDDPNVNIQRFKGLGEMNPDQLWE 590



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 5/188 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    KLA  +  +       +  S    D ++      V    +    
Sbjct: 455 MLNVEKSRLDKVFDNEKLAPVIIALGAGIGDEFDTSKLRYDKIIIMADADVDGSHIRMLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG-RK---GISM 736
             F F      +    +      +  +    D+        +       G RK    +++
Sbjct: 515 LTFFFRYMRPLVEQGHVYIAMPPLFKVYKGKDEYYAYDDRQVSKIFEDRGWRKDDPNVNI 574

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QR+KGLGEMN  QLWETT+NP+TR++++V + DA  AD++FS  MG++VEPR+E+I  ++
Sbjct: 575 QRFKGLGEMNPDQLWETTMNPETRTIMKVDVQDAITADEVFSMFMGEKVEPRKEYIHLHA 634

Query: 797 LPSA-LDI 803
                LDI
Sbjct: 635 KDVTYLDI 642


>gi|218264667|ref|ZP_03478430.1| hypothetical protein PRABACTJOHN_04139 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221854|gb|EEC94504.1| hypothetical protein PRABACTJOHN_04139 [Parabacteroides johnsonii
           DSM 18315]
          Length = 651

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 289/602 (48%), Positives = 401/602 (66%), Gaps = 15/602 (2%)

Query: 1   MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+ I+N+   Y ADSIQ+L+GL+AV+KRPSMYIGDT  E GLHH++YEV+DN+IDE+L 
Sbjct: 1   MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   + V +N D S +V+D+GRGIP D+H++EG+SA EV++T LHAGGKF++ SYKVSG
Sbjct: 60  GFCTQVDVVINEDNSISVTDDGRGIPVDIHEKEGVSALEVVLTVLHAGGKFDKGSYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS++LK  ++R+G I+   F  G   + + V G   + TGT + F P 
Sbjct: 120 GLHGVGVSCVNALSTYLKAEVRRDGKIHMQEFSCGKPLHSIEVIGET-DVTGTTIMFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
             IFSV ++ Y+ L  RLREL+FLN+ + +SL DKR  +     +        G++ FV 
Sbjct: 179 GSIFSVTEYKYEILATRLRELAFLNAGITLSLTDKRVVKEDGNYKSEIFHSDEGLKEFVR 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y+DR K+ L+   I I   +  I +++AM +N  ++E+V  + N+I   +GGTHL+G R 
Sbjct: 239 YIDRSKEQLIPDVIHIVTEKQGIPVEVAMTYNTSFNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR +  Y + S   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV  
Sbjct: 299 GLTRTLKKYADDSKLLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  + + L  +LEEHP EAKIIV KV+ A+  R AAR+AR+L +RK  +    LPGKL
Sbjct: 359 AVDQAIGEALGYYLEEHPKEAKIIVDKVILAAQARQAARKARELVQRKSPMTGGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +D    ELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  S+EI
Sbjct: 419 ADCSSKDAALCELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKVFESEEI 478

Query: 475 GTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +  A+G  IG +         KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M +LI 
Sbjct: 479 QNIFRAMGVTIGTEEDPKELNLSKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRALIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587
           NG++Y+  PPLY   +GK  +Y   ++  + ++       E ++        G ++ + L
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTDQQRQAFIDKYGGGNENQVHTQRYKGLGEMNDHQL 598

Query: 588 RN 589
            +
Sbjct: 599 WD 600



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 38/66 (57%), Positives = 53/66 (80%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLW+TT+NP+ R+L ++ I  A++AD +FS LMG++V PRREFI+EN+
Sbjct: 585 QRYKGLGEMNDHQLWDTTMNPENRTLKQITIDSAAEADQIFSMLMGEDVGPRREFIEENA 644

Query: 797 LPSALD 802
             + +D
Sbjct: 645 TYANID 650


>gi|298207945|ref|YP_003716124.1| DNA gyrase subunit B [Croceibacter atlanticus HTCC2559]
 gi|83850586|gb|EAP88454.1| DNA gyrase subunit B [Croceibacter atlanticus HTCC2559]
          Length = 645

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 276/601 (45%), Positives = 390/601 (64%), Gaps = 12/601 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +   Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MSEESKKQ-YSADSIQALEGMEHVRMRPSMYIGDV-GIRGLHHLVYEVVDNSIDEAMGGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N D S T  DNGRGIP  +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 59  CDTIDVIINEDNSITTKDNGRGIPIGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  LK  + ++G I+E  +  G    P+   G   + +GT VTF P + 
Sbjct: 119 HGVGVSCVNALSDHLKASVHKDGKIWEQEYERGKPLYPVKAVGDT-DFSGTVVTFHPDNQ 177

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235
           IF     +NY+TL  R+REL+FLN  + I+L DKR      E      F + G+  FV +
Sbjct: 178 IFQQTIEYNYETLASRMRELAFLNKGLTITLTDKRQTDDKGEFISERFFSEEGLSEFVRF 237

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD ++ P+++  I ++G ++ + +++AM +N  Y EN+  + NNI   +GGTHL+G R  
Sbjct: 238 LDGNRDPIIKDVISMEGEKNGVPVEVAMIYNSSYAENLHSYVNNINTHEGGTHLAGFRRG 297

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  + + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S 
Sbjct: 298 LTSSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVTSA 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ +   +EE+P +AK I++KV+ A+  R AA++AR++ +RK V+ I  LPGKL+
Sbjct: 358 VSQAVSEMIEIHMEENPNDAKTIIEKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLS 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS +DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI 
Sbjct: 418 DCSNQDPAECEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMSHKVFENEEIK 477

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRYHKI+IM DADVDG+HI TL+LTFFFR M  LI  
Sbjct: 478 NIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTFFFRYMKELIEA 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI  PPLY I +G+  +Y  +E+  E        S  ++ +     + ++      +
Sbjct: 538 GHIYIATPPLYLIKKGQKKRYAWNEDEREAIANEFKGSVSVQRYKGLGEMNAEQLWDTTM 597

Query: 592 D 592
           +
Sbjct: 598 N 598



 Score =  170 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 6/188 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E      V    ++ N    +      E+  K+ + S      +V      V    
Sbjct: 459 ILNVEKAMSHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSH 518

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735
           +      F F    + I +  I       L LI  G K +        + I +  +  +S
Sbjct: 519 IATLILTFFFRYMKELIEAGHIY-IATPPLYLIKKGQKKRYAWNEDEREAIANEFKGSVS 577

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLW+TT+NP+ R+L +V I +  +AD +FS LMGD+V PRREFI++N
Sbjct: 578 VQRYKGLGEMNAEQLWDTTMNPEFRTLRQVAIDNGVEADRIFSMLMGDDVPPRREFIEKN 637

Query: 796 SLPSALDI 803
           +  + +D+
Sbjct: 638 AKYANIDV 645


>gi|237736253|ref|ZP_04566734.1| DNA gyrase subunit B [Fusobacterium mortiferum ATCC 9817]
 gi|229421601|gb|EEO36648.1| DNA gyrase subunit B [Fusobacterium mortiferum ATCC 9817]
          Length = 635

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/585 (45%), Positives = 383/585 (65%), Gaps = 5/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++Y A+ I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY   I V
Sbjct: 2   SNNYQAEDITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D    V DNGRGIP D+H + G SA E+++T LHAGGKF   +YKVSGGLHGVGVS
Sbjct: 61  SILPDNVIEVVDNGRGIPVDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W ++ +++ G ++   +  GI +  +   G    + GT V F    +IF    
Sbjct: 121 VVNALSLWTEVEVRKNGKVWYQKYNRGIPEEAVKEIGITE-EHGTTVRFKADHEIFETLV 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++Y+TL++RL+EL++LN  + I+L D R    ++    ++GGI  F+  +    + L++ 
Sbjct: 180 YDYNTLKNRLKELAYLNKGLVITLTDSRKEPFKKEIFEFEGGIADFLREITEDTEKLIKE 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI + G  DNI +++A  +     E +  F NNI   +GGTH+ G R+ALTR I    + 
Sbjct: 240 PIYMTGEVDNIGVEIAFLYTVNQSEIIYSFVNNINTHEGGTHVQGFRTALTRIINDVGKA 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K     + G D REG T+++S+K+P P+F  QTK KL +SEV  +V + V   L  
Sbjct: 300 QGLLKDKDGKLQGTDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVSTVVGGQLKM 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
            LE++P + K+I++K+L++   R+AA+RAR+L  RK  L++ SLPGKLADCS ++P++ E
Sbjct: 360 ILEDNPNDTKVIIEKILNSKKAREAAQRARELVLRKSALEVGSLPGKLADCSSKNPEECE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R +QAILPLRGKILNVE+A   K L + E+  +ITA GTGIG
Sbjct: 420 IYIVEGDSAGGSAKQGRDRYHQAILPLRGKILNVEKAGLHKALENNEVRAMITAFGTGIG 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D+F+I KLRY KII+MTDADVDGAHIRTLLLTF +R M  LI+NG ++I +PPLY I+ 
Sbjct: 480 -DNFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRYMIELIYNGNVFIAQPPLYKISY 538

Query: 547 GKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           GK ++Y   +  L++        ++          G ++   L  
Sbjct: 539 GKQIKYAYSDRELKEITEAFEGEDKKYTLQRYKGLGEMNPEQLWE 583



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 101/265 (38%), Gaps = 7/265 (2%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +             +      +          +  +   +I +        K
Sbjct: 374 KILNSKKAREAAQRARELVLRKSALEVGSLPGKLADCSSKNPEECEIYIVEGDSAGGSAK 433

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                + +  +   +   + N E          +++   +         +++        
Sbjct: 434 QGRDRYHQAIL--PLRGKILNVEKAGLHKALENNEVRAMITAFGTGIGDNFNIEKLRYGK 491

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           ++      V    +      F +    + I++  +       L  I  G +IK       
Sbjct: 492 IILMTDADVDGAHIRTLLLTFIYRYMIELIYNGNVF-IAQPPLYKISYGKQIKYAYSDRE 550

Query: 723 LDTIFS--IGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           L  I     G  K  ++QRYKGLGEMN  QLWETT++P  R+LL+V I DA  AD LF +
Sbjct: 551 LKEITEAFEGEDKKYTLQRYKGLGEMNPEQLWETTMDPQNRTLLKVTIDDARAADMLFDK 610

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGD+V+PRREFI+EN+     LDI
Sbjct: 611 LMGDKVDPRREFIEENAEYVKNLDI 635


>gi|258647794|ref|ZP_05735263.1| DNA gyrase, B subunit [Prevotella tannerae ATCC 51259]
 gi|260852245|gb|EEX72114.1| DNA gyrase, B subunit [Prevotella tannerae ATCC 51259]
          Length = 653

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 277/601 (46%), Positives = 378/601 (62%), Gaps = 16/601 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  ++S+Y A +IQ+L+GL+AV+KRP+MYIGD     GLHH++YE +DN+IDE+L GY  
Sbjct: 4   NQNKSSNYSASNIQVLEGLEAVRKRPAMYIGDISD-KGLHHLVYETVDNSIDEALAGYCT 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D S  V DNGRGIP D+H +E  SA EV+MT LHAGGKF++ SYKVSGGLHG
Sbjct: 63  HIEVTICTDNSIIVQDNGRGIPVDMHPKEHRSALEVVMTVLHAGGKFDKGSYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVS VNALS  +  ++ R+G IY+  +  G    P+ V G      GT+  F P   +F
Sbjct: 123 VGVSCVNALSKHMTSQVFRDGKIYQQEYEQGKPLYPVKVVGET-QLRGTKQQFWPDDTVF 181

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---REITMFYKGGIEAFVSYLDRH 239
           +   +NYDTL  R+REL+FLN+ ++I+L D R  E    ++   + + G+  FV Y+D  
Sbjct: 182 TATIYNYDTLATRMRELAFLNAGLKITLTDLRPDEEGNTKQEEFYSEQGLREFVRYVDSS 241

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +  L    I I  ++ +I I++A+ +N  Y ENV  + NNI   +GGTHL G R A+TR 
Sbjct: 242 RTHLFNDVIYISTNKADIPIEVAIMYNTSYSENVHSYVNNINTIEGGTHLIGFRQAITRV 301

Query: 300 ITSYVEK--SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           +  Y E+  +   +K K  + G+D REG T+V+S+K+ +P+F  QTK +L ++EV   V 
Sbjct: 302 LKKYAEQTAAKQIEKAKIEISGEDFREGLTAVISVKVAEPQFEGQTKTRLGNTEVTGAVN 361

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V + L+ +LEEHP EAK+IV KV+ A+  R AAR+AR+  +RK  +    LPGKLADC
Sbjct: 362 QAVGEALTNYLEEHPKEAKLIVDKVILAATARIAARKARESVQRKNPMSGGGLPGKLADC 421

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D    ELFLVEGDSAGGSAKQ RSR  QAILPLRGKILNVE+A + K   S E+  +
Sbjct: 422 SSKDAAVCELFLVEGDSAGGSAKQARSRTTQAILPLRGKILNVEKAMWHKAFESDEVNNI 481

Query: 478 ITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I ALG   G        +I KLRYHKIIIM DADVDG HI TL++T F+R MP +I +G+
Sbjct: 482 IQALGVRFGLDEDSKEANIEKLRYHKIIIMADADVDGQHIATLIMTLFYRYMPQIIEDGY 541

Query: 534 LYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLR 588
           LYI  PPLY     +G + +Y  +E +   ++      S            G ++   L 
Sbjct: 542 LYIAMPPLYRCRAKKGHAEEYCYNETARLRFIEQYGDGSEDNITTQRYKGLGEMNPEQLW 601

Query: 589 N 589
            
Sbjct: 602 E 602



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/73 (54%), Positives = 53/73 (72%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
               I+ QRYKGLGEMN  QLWETT+NP+TR L +V +  A+ AD  FS LMG++V PRR
Sbjct: 580 SEDNITTQRYKGLGEMNPEQLWETTMNPETRLLKQVSLESATNADYTFSMLMGEDVGPRR 639

Query: 790 EFIQENSLPSALD 802
           EFI++N+  + +D
Sbjct: 640 EFIEKNATYANID 652


>gi|76802387|ref|YP_327395.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas pharaonis
           DSM 2160]
 gi|76558252|emb|CAI49840.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas pharaonis
           DSM 2160]
          Length = 639

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 302/592 (51%), Positives = 397/592 (67%), Gaps = 8/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q+S Y A  IQ+L+GL+AV+KRP+MYIG TD   GLHH++YEV+DNAIDE+L GY
Sbjct: 1   MS---QDSEYSAGQIQVLEGLEAVRKRPAMYIGSTD-TRGLHHLVYEVVDNAIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS TV D+GRGIP D H++    A EVIMT LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDTIEVVINDDGSVTVRDDGRGIPVDTHEDHDRPAVEVIMTVLHAGGKFDSKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPS 178
           HGVGVSVVNALS WL++ IKR+G+++   F +G  +N L           TGTE+ F P 
Sbjct: 117 HGVGVSVVNALSKWLEVEIKRDGHVWHHRFDHGEPENGLEQVREMDPNESTGTEIRFWPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            DIF   DF + TL+ RLREL+FLN  V I++ D+R  EP   T  Y GGI  FV+YL+ 
Sbjct: 177 DDIFETTDFTFSTLESRLRELAFLNPGVGITIRDERPEEPDASTFEYDGGIREFVAYLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +  L ++ I  +   D+I +++AM+   G   ++  F NNI  ++GGTHL+G ++ALTR
Sbjct: 237 TRDVLHENIIYFEDEEDDIHVEVAMQATAGVQGSIHAFANNINTREGGTHLTGFKTALTR 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y   +   K    ++ G+D REG T+V+SIK PDP+F  QTK KL + EVR +VES
Sbjct: 297 VINDYATSNGMLKDLDGNLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNGEVRGIVES 356

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V++ L+  LEEHP  A+ I+ K ++A+  R AA++A +LTRRK  L+  SLPGKL+DC 
Sbjct: 357 AVHEELATHLEEHPDTAEAIISKAVEAAKARKAAKKAEELTRRKSALESTSLPGKLSDCQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP++SELF+VEGDSAGGSAKQGR+ E QAILPLRGKILNVE+ R D++L + EI  LI
Sbjct: 417 TRDPEESELFVVEGDSAGGSAKQGRNPEFQAILPLRGKILNVEKHRLDRILENNEIRNLI 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+GTGIG++ FDI + RY KIII+ DADVDGAHIRTLLLTF +R M  LI  G++Y  +
Sbjct: 477 TAVGTGIGEE-FDIEEARYQKIIILCDADVDGAHIRTLLLTFLYRHMTPLIEAGYVYAAQ 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589
           PPLY +  G        E   +  +      S +        G ++   L +
Sbjct: 536 PPLYRVRDGGDTYDAMTEAERDRIVEEVCDGSPDQVQRFKGLGEMNPKQLWD 587



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QR+KGLGEMN  QLW+TT+NP+ R L ++ I DA+ AD +FS LMGD VEPR++FI+E
Sbjct: 570 QVQRFKGLGEMNPKQLWDTTMNPENRILKQITIEDAAAADRMFSVLMGDAVEPRKQFIKE 629

Query: 795 NSLPSA-LDI 803
           ++  +  +DI
Sbjct: 630 HADEAEWIDI 639


>gi|313886470|ref|ZP_07820186.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924016|gb|EFR34809.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica PR426713P-I]
          Length = 649

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 285/579 (49%), Positives = 382/579 (65%), Gaps = 10/579 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +  +Y A SIQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MTTPQEKGAYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              + V +  D S  V+DNGRGIP D+H +EG SA EV+MT LHAGGKF++ SYKVSGGL
Sbjct: 60  CTEVLVEILSDNSIQVTDNGRGIPVDMHAKEGKSALEVVMTVLHAGGKFDKGSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L   + R+G IY   +  G     + V G A +DTGT +TF P   
Sbjct: 120 HGVGVSCVNALSESLIAEVHRDGKIYRQEYSRGKPLTGVEVVGKA-DDTGTRITFKPDDT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYL 236
           IF    ++ +TL HRLRELS+LN+ + + LID R  +    P+    + + G+  FV Y+
Sbjct: 179 IFRETIYSSETLSHRLRELSYLNAGLHLKLIDHRVHDEEGQPKSWIFYSENGLSEFVRYV 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           D  K+ L+   I     +  + +++A+ +N  Y ENV  + N+I   +GGTHL+G R  L
Sbjct: 239 DGAKESLIHDVIHHTTEKQGVPVEVALTYNTSYQENVYTYVNDIHTIEGGTHLTGFRRGL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y   S    K K  + GDD REG T+++S+K+ +P+F  QTK KL +SE+  VV
Sbjct: 299 TRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNSEIVGVV 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ++ V++ L  +LEEHP EAK+IV KV+ A+  R AARRAR+L +RK  L    LPGKLAD
Sbjct: 359 DAAVSEALEIYLEEHPTEAKLIVDKVILAAQARHAARRARELVQRKSPLTGGGLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS +DP + ELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVE+A   ++L + EI  
Sbjct: 419 CSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKAMQHRILDNAEIKN 478

Query: 477 LITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           + TALG  +G +        +KLRYHKIIIMTDADVDGAHI TL+LTFFFR M  LI NG
Sbjct: 479 IYTALGVTVGTEDDSKALNLSKLRYHKIIIMTDADVDGAHIATLILTFFFRNMRPLIENG 538

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           ++YI  PPLY   + +  +Y   +E   D++      +E
Sbjct: 539 YVYIANPPLYLCKKDRIEEYCWTDEQKSDFVTKYGNGQE 577



 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 54/69 (78%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           I +QRYKGLGEMN  QLW+TT+NP TR+L +V I + + AD +FS LM ++VEPRREFI+
Sbjct: 580 IKIQRYKGLGEMNDVQLWDTTMNPQTRTLRQVTIDNLASADSVFSMLMSEDVEPRREFIE 639

Query: 794 ENSLPSALD 802
           EN+  + +D
Sbjct: 640 ENATYANID 648


>gi|307719919|ref|YP_003875451.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192]
 gi|306533644|gb|ADN03178.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192]
          Length = 635

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 395/585 (67%), Gaps = 7/585 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A+ IQ+LKGL+ V+KRP MYIG T GE GLHH++YEV+DN+IDE+L G    I V +
Sbjct: 2   SYTAEQIQVLKGLEPVRKRPGMYIGST-GEEGLHHLVYEVVDNSIDEALAGVCSRIEVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
                 TV+D+GRGIP DLH EE +SA E++MTRLHAGGKF++K+YKVSGGLHGVGVSVV
Sbjct: 61  EPGNVVTVTDDGRGIPVDLHPEEKVSALELVMTRLHAGGKFDKKTYKVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS W ++ + R+G I+   +  G+   P+ V G       T   F P ++IF   +F+
Sbjct: 121 NALSEWCEVEVHRDGKIHVQRYQRGVPLGPVEVRGRTDRTG-TTTRFKPDAEIFETTEFS 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L  RLREL+FLN  ++I + D R+   +E    Y+GG+  FV+YL++++  L + PI
Sbjct: 180 FDILSQRLRELAFLNKGIEIVIRDLRTKRVKEHVFKYEGGLREFVAYLNKNRTTLQKEPI 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +G+RD++ ++ A+ +ND Y E    F NNI  K+GGTH+ G RSALTR +    ++S 
Sbjct: 240 YFEGARDHVEVECAIEYNDSYSETFFSFVNNINTKEGGTHVVGFRSALTRCLNDLFKQSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK   ++ GDD REG T+VLSIK+P+P+F  QTK KL +S+V+ +VESFV + L A  
Sbjct: 300 FAKKLDDTLSGDDVREGLTAVLSIKVPEPQFEGQTKTKLGNSDVKGIVESFVYEQLQAHF 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             HP + + I++KV+ A+  R AAR+AR+L RRK VL+   LPGKLADC E+DP + E+F
Sbjct: 360 ARHPKDGEAILEKVVQAARARIAARKARELARRKSVLESMDLPGKLADCIEKDPARCEIF 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQGR RE QAILPL GK+LNVE+ R +K+L++ ++  +I +LGTGIG  
Sbjct: 420 IVEGDSAGGSAKQGRDREFQAILPLWGKMLNVEKTRMEKVLTNDKLYPIIASLGTGIG-T 478

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI++LRYHK+IIM DADVDG+HIRTLLLTFF+R M  L+  G +YI  PPLY +    
Sbjct: 479 EFDISRLRYHKVIIMADADVDGSHIRTLLLTFFYRYMKELVERGHVYIAMPPLYKVWVKN 538

Query: 549 SLQYVKDEESLE----DYLINQSLSEEIELFCDSKGVISKNDLRN 589
            ++Y   +E  +     +       E         G ++   L  
Sbjct: 539 DVEYAYSDEERDRILERFAKKYKKDEINVQRYKGLGEMNPEQLWE 583



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 5/188 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    KL   +  +       +  S      ++      V    +    
Sbjct: 448 MLNVEKTRMEKVLTNDKLYPIIASLGTGIGTEFDISRLRYHKVIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK----GISM 736
             F +    + +    +      +  +    D             +    +K     I++
Sbjct: 508 LTFFYRYMKELVERGHVYIAMPPLYKVWVKNDVEYAYSDEERDRILERFAKKYKKDEINV 567

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT+NP TR+++++++ DA +A+++F+ LMGD+V PRR+FI+EN+
Sbjct: 568 QRYKGLGEMNPEQLWETTMNPATRNIIQIRVEDAVEAEEVFTTLMGDQVAPRRKFIEENA 627

Query: 797 LPS-ALDI 803
           L    LD+
Sbjct: 628 LFVTNLDV 635


>gi|288554611|ref|YP_003426546.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4]
 gi|288545771|gb|ADC49654.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4]
          Length = 646

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 293/586 (50%), Positives = 399/586 (68%), Gaps = 6/586 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE++ G+ D I 
Sbjct: 13  EQQSYDESQIQVLEGLEAVRKRPGMYIGSTS-GRGLHHLVWEIVDNSIDEAMAGHCDTIQ 71

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF    YKVSGGLHGVG 
Sbjct: 72  VTIEEDNSITVEDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGA 131

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L++ + RE  +Y   +  G+    L V G      GT + F P  +IF+  
Sbjct: 132 SVVNALSTKLEVEVHRENQVYYQEYHRGVPAADLAVIGETE-KRGTIIRFKPDPEIFTET 190

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + YD L  RLREL+FLN  + I++ DKR          Y+GGI +FV +L+R K+ L 
Sbjct: 191 TEYEYDILATRLRELAFLNKGLTITITDKREENKSSTYF-YEGGIASFVEHLNRSKEVLH 249

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             PI I+  +D +++++A+++NDGY  N+  F NNI   +GGTH SG ++ LTR I  Y 
Sbjct: 250 DEPIHIEAEKDGLNVEVAVQYNDGYVSNIYSFANNISTHEGGTHESGFKTGLTRVINDYA 309

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K++  ++ G+D REG T+++S+K+PDP+F  QTK KL +SE R+V +S  ++  
Sbjct: 310 RKHNLFKENDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTVTDSLFSEAF 369

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S ++ EHP   K IV+K L AS  R+AA++AR+LTRRK  L+++SLPGKLADCS +D   
Sbjct: 370 SRFMIEHPQVGKKIVEKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSKDATI 429

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L++ EI  +ITALGTG
Sbjct: 430 SEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILANNEIRAIITALGTG 489

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D FDI K RYHKIIIMTDADVDGAHIRTL+LTFF+R M  LI  G++YI +PPLY +
Sbjct: 490 IG-DDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEKGYIYIAQPPLYKV 548

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           T+G+ LQY  +++ L+  +   +   ++        G ++   L  
Sbjct: 549 TQGRDLQYAYNDKELDQIMSQYTERNKVGIQRYKGLGEMNPTQLWE 594



 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 82/354 (23%), Positives = 141/354 (39%), Gaps = 35/354 (9%)

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI----- 536
           G   G      +  R H +    D ++ G  +R  L      ++P     G         
Sbjct: 296 GFKTGLTRVINDYARKHNLFKENDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNS 355

Query: 537 -IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG--------VISKNDL 587
             +     +      +++ +   +   ++ + L          K          +  + L
Sbjct: 356 EARTVTDSLFSEAFSRFMIEHPQVGKKIVEKGLMASRAREAAKKARELTRRKSALEVSSL 415

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
              + D    D  I + Y     +    A      + ++   +   + +    RL+ I  
Sbjct: 416 PGKLADCSSKDATISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILA 475

Query: 648 KSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNR 696
            +E          G  ++ DI   R  + +      ++G+ I +    F  +Y R     
Sbjct: 476 NNEIRAIITALGTGIGDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPL--- 532

Query: 697 IEENYL----TILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQL 750
           IE+ Y+      L  +  G  ++       LD I S    R  + +QRYKGLGEMN +QL
Sbjct: 533 IEKGYIYIAQPPLYKVTQGRDLQYAYNDKELDQIMSQYTERNKVGIQRYKGLGEMNPTQL 592

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           WETT++P+ R++L+V + DA +AD++F  LMGD VEPRR+FI EN+     LDI
Sbjct: 593 WETTMDPEYRTVLQVTLEDAMKADEIFEILMGDRVEPRRDFIHENAQYVKNLDI 646


>gi|154491922|ref|ZP_02031548.1| hypothetical protein PARMER_01552 [Parabacteroides merdae ATCC
           43184]
 gi|154088163|gb|EDN87208.1| hypothetical protein PARMER_01552 [Parabacteroides merdae ATCC
           43184]
          Length = 651

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 287/602 (47%), Positives = 402/602 (66%), Gaps = 15/602 (2%)

Query: 1   MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+ I+N+   Y ADSIQ+L+GL+AV+KRPSMYIGDT  E GLHH++YEV+DN+IDE+L 
Sbjct: 1   MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   + V +N D S +V+D+GRGIP D+H++EG+SA EV++T LHAGGKF++ SYKVSG
Sbjct: 60  GFCTQVDVVINEDNSISVTDDGRGIPVDIHEKEGVSALEVVLTVLHAGGKFDKGSYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS++L+  ++R+G ++   F  G   + + V G   + TGT + F P 
Sbjct: 120 GLHGVGVSCVNALSTYLRAEVRRDGKVHMQEFSCGKPLHSIEVIGET-DVTGTTIMFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
             IFSV ++ Y+ L  RLREL+FLN+ + +SL DKR  +     +      + G++ FV 
Sbjct: 179 GSIFSVTEYKYEILAARLRELAFLNAGITLSLTDKRVVKEDGSYKSEIFRSEEGLKEFVR 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y+DR K+ L+   I I   +  I +++AM +N  ++E+V  + N+I   +GGTHL+G R 
Sbjct: 239 YIDRSKEQLIPDVIHIVTEKQGIPVEVAMTYNTSFNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR +  Y + S   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV  
Sbjct: 299 GLTRTLKKYADDSKLLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  + + L  +LEEHP EAKIIV KV+ A+  R AAR+AR+L +RK  +    LPGKL
Sbjct: 359 AVDQAIGEALGYYLEEHPKEAKIIVDKVILAAQARQAARKARELVQRKSPMTGGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +D    ELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  S+EI
Sbjct: 419 ADCSSKDAALCELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKVFESEEI 478

Query: 475 GTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +  A+G  IG +         KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M +LI 
Sbjct: 479 QNIFRAMGVTIGTEEDPKELNLSKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRALIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587
           NG++Y+  PPLY   +GK  +Y   ++  + ++       E ++        G ++ + L
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTDQQRQAFIDKYGGGNENQIHTQRYKGLGEMNDHQL 598

Query: 588 RN 589
            +
Sbjct: 599 WD 600



 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 53/66 (80%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLW+TT+NP+ R+L ++ I  A++AD +F+ LMG++V PRREFI+EN+
Sbjct: 585 QRYKGLGEMNDHQLWDTTMNPENRTLKQITIDSAAEADQIFAMLMGEDVGPRREFIEENA 644

Query: 797 LPSALD 802
             + +D
Sbjct: 645 TYANID 650


>gi|162446893|ref|YP_001620025.1| DNA gyrase subunit B [Acholeplasma laidlawii PG-8A]
 gi|161985000|gb|ABX80649.1| DNA gyrase, subunit B [Acholeplasma laidlawii PG-8A]
          Length = 635

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 293/600 (48%), Positives = 399/600 (66%), Gaps = 6/600 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N  NS Y AD+IQIL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD 
Sbjct: 3   NNNNSHYTADNIQILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALGGYADE 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           IT+ +       V+DNGRGIP D+H +    A E I+T LHAGGKF++ SYKVSGGLHGV
Sbjct: 62  ITIEILKGEVIRVTDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVN LS W  + I ++G IYE  +  GI    L V GS  + +GT ++F     IF+
Sbjct: 122 GASVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFT 180

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               +NY+TL+ R+++L+FLN  ++++LID R  E +  +  Y+GGI  +V +L++ K  
Sbjct: 181 ETVIYNYETLRTRIQQLAFLNKGLKLNLIDDRFEENKSESFHYEGGITEYVKFLNQSKSK 240

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +    I I   +D I+++LAM++ D Y  N+  FTNNI   +GG H  G + ALTR I+ 
Sbjct: 241 IHNDIIYIDKEQDGITVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISK 300

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +          S+ G+D REG T+++S+K P+P+F  QTK KL + EVR++     ++
Sbjct: 301 YADDLKMK--KDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +  +L E+P +AK IV+KVL A+  R AAR+A+DLTRRK  LD      KLADC  +DP
Sbjct: 359 AIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDP 418

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           +KSE+++VEGDSAGGSAKQGR  E QAI+PLRGK+LNVE+AR DKMLS++EI  LI A+G
Sbjct: 419 EKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMG 478

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGI  D FDI K RYHKI+IMTDADVDGAHIRTLLLTF FR M  LI  G++Y  +PPLY
Sbjct: 479 TGI-SDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLY 537

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I+ G++ QY  +E+ L + L        I+ +     + ++      +D A +    IK
Sbjct: 538 KISWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 597



 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 7/156 (4%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G  +  DI   R  + V      ++G+ I +    +  R     I+  Y       L  
Sbjct: 479 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 538

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           I  G   +       L+ +        S+QRYKGLGEM+A QLW+TT++P  R+LL++K+
Sbjct: 539 ISWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 598

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            DA +AD +FS LMG+EVEPR+EFIQ N+  +  DI
Sbjct: 599 EDAIEADQVFSMLMGEEVEPRKEFIQNNAQYAT-DI 633


>gi|306821823|ref|ZP_07455415.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550130|gb|EFM38129.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 649

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 290/646 (44%), Positives = 406/646 (62%), Gaps = 10/646 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + + NS Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNAIDE+L G+
Sbjct: 10  MEEKV-NSEYGAEQIQVLEGLEPVRKRPGMYIGST-GSKGLHHLVYEVVDNAIDEALAGF 67

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V+++++   TV D+GRGIP ++H + G S  E ++T LHAGGKF    YKVSGGL
Sbjct: 68  CKNIYVSIDVNNGITVIDDGRGIPVEVHPKTGKSTLETVLTVLHAGGKFGAGGYKVSGGL 127

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVGVSVVNALS  L   +K++G IY+  F  G   + + V G     + GT ++FLP  
Sbjct: 128 HGVGVSVVNALSKSLTAVVKKDGKIYKQEFEKGNPVSDVHVVGDCPMEERGTCISFLPDE 187

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F    ++++ L+HRLREL+FLN  + I+L D R+ E       Y+GGI  +V  L+++
Sbjct: 188 TVFEETVYSFEVLEHRLRELAFLNKGISITLEDNRTIEKVTRKYHYEGGIIEYVKALNKN 247

Query: 240 KKPLMQSPIRIQ-GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           ++ L +     +     +  I++AM++ D Y EN+  F NNI   +GG HL G +SALTR
Sbjct: 248 REALTEVIYFNKLDEEFSYDIEIAMQYTDAYVENIYSFANNINTVEGGMHLIGFKSALTR 307

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y  K+   K+   +  G+D REG T+++S+K+P+P++  QTK KL + ++RS VE 
Sbjct: 308 VVNDYARKNNMLKEKDENFTGEDIREGLTAIISVKLPEPQYEGQTKTKLGNPQMRSSVEQ 367

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              D ++ +LEE+P  A+II++K + +   R AA+RARDLTRRKG+L+  SLPGKLADC 
Sbjct: 368 ITVDQVATFLEENPATARIIMEKCMRSQRARQAAKRARDLTRRKGILESTSLPGKLADCR 427

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP KSE+F+VEGDSAGGSAK+GR+ +NQAILPLRGKILNVE+AR DK L S  I  +I
Sbjct: 428 EKDPSKSEIFIVEGDSAGGSAKEGRNSQNQAILPLRGKILNVEKARLDKALQSDTIKNMI 487

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA G GIG + FD +KLRYHKIIIM+DADVDGAHIRTL+LTFFFR M  LI  G++YI +
Sbjct: 488 TAFGCGIGSE-FDDSKLRYHKIIIMSDADVDGAHIRTLILTFFFRYMRPLIEKGYVYIAQ 546

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPL+ I +GK   Y    E LE  L        +       G +   +L +       +D
Sbjct: 547 PPLFSIEKGKKTYYAYSPEELEAKLNEIGRERTVVSRNKGLGEMDAEELGDT-----TMD 601

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +     + +  I    I  +   +  +     +        N 
Sbjct: 602 PAKRVLLKVNLEDAIAADEIFDILMGDKVEPRREFIQKNAKYVENL 647



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +      +  + N +          +  S      ++      V    +    
Sbjct: 466 ILNVEKARLDKALQSDTIKNMITAFGCGIGSEFDDSKLRYHKIIIMSDADVDGAHIRTLI 525

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I    +      + S+           P  L   +  IGR+   + R K
Sbjct: 526 LTFFFRYMRPLIEKGYVYIAQPPLFSIEKGKKTYYAYSPEELEAKLNEIGRERTVVSRNK 585

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEM+A +L +TT++P  R LL+V + DA  AD++F  LMGD+VEPRREFIQ+N+    
Sbjct: 586 GLGEMDAEELGDTTMDPAKRVLLKVNLEDAIAADEIFDILMGDKVEPRREFIQKNAKYVE 645

Query: 800 ALDI 803
            LDI
Sbjct: 646 NLDI 649


>gi|293400051|ref|ZP_06644197.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306451|gb|EFE47694.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 648

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 285/598 (47%), Positives = 401/598 (67%), Gaps = 6/598 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +   + SY AD IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L G+
Sbjct: 12  MENIKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTS-EKGLHHLVWEIVDNSIDEALAGF 70

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I + +  D    V DNGRG+PT + ++ GIS  E I T LHAGGKF   +YKVSGGL
Sbjct: 71  ATDIDIAIEKDNIIRVEDNGRGMPTGIVEKSGISGVETIFTILHAGGKFGGGAYKVSGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ + + GNIY M F N G     L + G   +  G+ V F    
Sbjct: 131 HGVGASVVNALSEWLEVTVYQNGNIYFMRFENGGKAVESLKIIGKT-DKHGSMVRFKADP 189

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF+    ++++TL  R+R+L+FLN S+++ L D+R  E +EI   Y GGI  +V YL++
Sbjct: 190 TIFTETQVYDFETLNTRIRQLAFLNKSIKLILTDEREEERKEIVYKYDGGIRQYVEYLNQ 249

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K PL +  + ++G  D I  ++A+++NDGY  N+  F NNI   +GGTH  G R ALTR
Sbjct: 250 NKSPLHEEVVYVEGIEDGILAEIALQYNDGYVPNIYSFCNNINTAEGGTHEDGFRLALTR 309

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y  ++   K    ++ GDD REG T+++S+K PDP++  QTK KL +SEVR +V S
Sbjct: 310 IVNAYARENGMIK-KDETLAGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIVSS 368

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L  +  E+P  AKII+ K + AS  R AA++AR+LTRRK  L+I+SLPGKLADCS
Sbjct: 369 ILGEQLEKFFLENPDTAKIIIDKCILASKARMAAKKARELTRRKSALEISSLPGKLADCS 428

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RD  + E+++VEGDSAGGSAKQGR+ + QAILPLRGKILNVE+AR  ++  + EI ++I
Sbjct: 429 SRDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKARLHRIFENNEIRSMI 488

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA G GIG++  DI+KLRYHKIIIMTDADVDGAHI TL+LTFF+R +  +I  G++YI  
Sbjct: 489 TAFGCGIGEEM-DISKLRYHKIIIMTDADVDGAHICTLMLTFFYRFLRPIIEGGYVYIAM 547

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           PPL+ I +G+ ++YV DE S +  +     +  I+ +     +  +      +D A +
Sbjct: 548 PPLFKIQKGQRIEYVYDESSRDRVIAEMGENVSIQRYKGLGEMNPEQLWETTMDPAFR 605



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 67/101 (66%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
             L  I  G +I+     S  D + +   + +S+QRYKGLGEMN  QLWETT++P  R+L
Sbjct: 548 PPLFKIQKGQRIEYVYDESSRDRVIAEMGENVSIQRYKGLGEMNPEQLWETTMDPAFRTL 607

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            +V I DA +AD +F  LMG+EV PRREFIQEN++ + LD+
Sbjct: 608 KKVNINDAMEADKVFEMLMGEEVGPRREFIQENAVYAELDV 648


>gi|163786113|ref|ZP_02180561.1| DNA gyrase subunit B [Flavobacteriales bacterium ALC-1]
 gi|159877973|gb|EDP72029.1| DNA gyrase subunit B [Flavobacteriales bacterium ALC-1]
          Length = 649

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 285/614 (46%), Positives = 397/614 (64%), Gaps = 14/614 (2%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+  +      Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L
Sbjct: 1   MSEKKESFNEHGYSADSIQALEGMEHVRMRPSMYIGDV-GTRGLHHLVYEVVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+ D ITVT+N D S T  D+GRGIP  LHK+EG+SA EV+MT++ AGGKF++ SYKVS
Sbjct: 60  AGHCDNITVTINEDNSITTEDDGRGIPVGLHKKEGVSALEVVMTKIGAGGKFDKDSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVS VNALS  LK  + REG +YE  +  G    P+  TG   +  GT VTF P
Sbjct: 120 GGLHGVGVSCVNALSEHLKATVFREGKVYEQEYERGKAMYPVKTTGDT-DKRGTTVTFKP 178

Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAF 232
            S IF+   ++NYDTL  RLREL++LN  + + LIDKR  +        T   K G++ F
Sbjct: 179 DSTIFTQTLEYNYDTLASRLRELAYLNKGITVHLIDKRHTKEDGSFEGETFHSKEGLKEF 238

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           + +LD  + PLM+  I  +G ++ + +++AM +N  Y EN+  + NNI   +GGTHLSG 
Sbjct: 239 IKFLDATRDPLMKDVIAFEGEKNGVPVEVAMIYNTSYAENLHSYVNNINTHEGGTHLSGF 298

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R  LT  +  + + S    K K  V GDD REG T+++S+K+ +P+F  QTK KL + EV
Sbjct: 299 RRGLTHTLKKFADSSGMLDKLKFDVAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
            + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V+ I  LPG
Sbjct: 359 SASVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL+DCSE++P+  E++LVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  ++
Sbjct: 419 KLSDCSEQNPEICEIYLVEGDSAGGTAKMGRDRAFQAILPLRGKILNVEKAMTHKVFENE 478

Query: 473 EIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           EI  + TALG  IG +        +KLRYHKI+IM DAD+DG+HI TL+LTFFFR M  L
Sbjct: 479 EIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIETLILTFFFRYMKEL 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I NG +YI  PPLY + +G    Y  +++     +       +I+ +     + +     
Sbjct: 539 IENGHIYIATPPLYLVKKGAKKAYAWNDDERMALMDQYGDGAKIQRYKGLGEMNAIQLWD 598

Query: 589 NFIDDALKIDKLIK 602
             ++   +  + I+
Sbjct: 599 TTMNPEFRTLRQIQ 612



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 7/199 (3%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +        E+  K+ + S      +
Sbjct: 457 LPLRGKILNVEKAMTHKVFENEEIKNIFTALGVTIG------TEEDSKALNLSKLRYHKI 510

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      +    +      F F    + I +  I       L L+  G K          
Sbjct: 511 VIMCDADIDGSHIETLILTFFFRYMKELIENGHIY-IATPPLYLVKKGAKKAYAWNDDER 569

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
             +      G  +QRYKGLGEMNA QLW+TT+NP+ R+L +++I +  +AD +FS LMGD
Sbjct: 570 MALMDQYGDGAKIQRYKGLGEMNAIQLWDTTMNPEFRTLRQIQIDNGVEADRVFSMLMGD 629

Query: 784 EVEPRREFIQENSLPSALD 802
           EV PRREFI++N++ + +D
Sbjct: 630 EVPPRREFIEKNAVYANID 648


>gi|261417505|ref|YP_003251187.1| DNA gyrase subunit B [Geobacillus sp. Y412MC61]
 gi|261373962|gb|ACX76705.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC61]
          Length = 640

 Score =  608 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 301/592 (50%), Positives = 406/592 (68%), Gaps = 7/592 (1%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+ +     +YDA  IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE+L G
Sbjct: 1   MTMEQRVEQTYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+  D S TV+DNGRGIP D+H+  G  A EVIMT LHAGGKF    YKVSGG
Sbjct: 60  YCTNIDVTIGKDNSITVADNGRGIPVDIHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS WL++ + R+G I+   +  G     L V G   + TGT   F P  
Sbjct: 120 LHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    F+Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V +L+R
Sbjct: 179 EIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE-YVYEGGIRSYVRHLNR 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG + ALTR
Sbjct: 238 TREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K++  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++
Sbjct: 298 IINDYARKQQIFKENDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDA 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS
Sbjct: 358 VFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCS 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +I
Sbjct: 418 SRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGIG++ FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  LI +G++YI +
Sbjct: 478 TALGTGIGEE-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY I +GK ++Y  ++  LE  L       +         G ++   L  
Sbjct: 537 PPLYKIEQGKQVRYAYNDRQLEKILAELPDQPKPTIQRYKGLGEMNPEQLWE 588



 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 133/334 (39%), Gaps = 41/334 (12%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGF----------------LYIIKPPLYGITRGK 548
           DA++ G  +R  L      + PS    G                 ++  +   + +    
Sbjct: 313 DANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPT 372

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             + + ++  +       +          S   IS  +L   + D    D  I + Y   
Sbjct: 373 IARKIVEKGMMAARARLAAKKARELTRRKSALEIS--NLPGKLADCSSRDPSISELYVVE 430

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDI 662
             +    A      + ++   +   + +    RL+ I   +E          G     DI
Sbjct: 431 GDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGIGEEFDI 490

Query: 663 LVKRIAR-GVQEQFVLEGSSIFSFGSKY-KRIFSNRIEENYL----TILSLICNGDKIKI 716
              R  +  +     ++G+ I +    +  R     IE  Y+      L  I  G +++ 
Sbjct: 491 SKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPLYKIEQGKQVRY 550

Query: 717 TGPCSLLDTIFSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
                 L+ I +     +      ++QRYKGLGEMN  QLWETT+NP+TR+LL+V + DA
Sbjct: 551 AYNDRQLEKILAE----LPDQPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDA 606

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             AD+ F  LMGD+VEPRR+FI+EN+     LDI
Sbjct: 607 IDADETFEILMGDKVEPRRQFIEENARYVKNLDI 640


>gi|260062006|ref|YP_003195086.1| DNA gyrase subunit B [Robiginitalea biformata HTCC2501]
 gi|88783568|gb|EAR14739.1| DNA gyrase subunit B [Robiginitalea biformata HTCC2501]
          Length = 648

 Score =  608 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 286/599 (47%), Positives = 397/599 (66%), Gaps = 12/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ ++  SY ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MSEEVKGKSYSADSIQALEGIEHVRMRPSMYIGDI-GVRGLHHLVYEVVDNSIDEAMGGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+VT+N D S TV DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDTISVTINEDNSITVEDNGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LK  + REG I+E  +  G    P+  TG   +  GT VTF P  +
Sbjct: 120 HGVGVSVVNALSKHLKATVYREGKIWEQEYERGRTLYPVKSTG-TSDLNGTIVTFHPDPE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLID---KRSPEPREITMFYKGGIEAFVSYL 236
           IF     F+YDTL +R+REL++LN  V I++ D   K   E      + + G++ F+ +L
Sbjct: 179 IFQQTIEFSYDTLSNRMRELAYLNKGVAITITDRRVKEKGEYLSERFYSEEGLKEFIRFL 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           D +++PL+   I ++G +++I +++AM +N  Y EN+  + NNI   +GGTHLSG R  L
Sbjct: 239 DGNREPLIADVISMEGEKNDIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLSGFRRGL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T  +  Y + S    K K  V GDD REG T+++S+K+ +P+F  QTK KL + EV + V
Sbjct: 299 TTTLKKYADASGMLDKLKFEVAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVSAAV 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
              V++ L+ +LEEHP +AK +V+KV+ A+  R AA +AR++ +RK  +    LPGKLAD
Sbjct: 359 SQAVSEMLTNYLEEHPDDAKTVVQKVILAAQARHAAAKAREMVQRKNPMSGGGLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS++DP++ E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  ++EI  
Sbjct: 419 CSDQDPERCEIFLVEGDSAGGTAKMGRDRNTQAILPLRGKILNVEKAMQHKVFENEEIKN 478

Query: 477 LITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           + TALG  IG +        +KLRYHK+IIM DADVDG+HI TL+LTFFFR M  LI  G
Sbjct: 479 IYTALGVTIGTEEDSKALNLDKLRYHKVIIMCDADVDGSHIETLILTFFFRYMRELIEGG 538

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI--ELFCDSKGVISKNDLRN 589
            +YI  PPLY + +G   +Y  +++  +  +   S S            G ++   L +
Sbjct: 539 HVYIATPPLYLVKKGSKKRYAWNDKERDAIVEELSTSSGSPGIQRYKGLGEMNAEQLWD 597



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 14/205 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +        E+  K+ +        +
Sbjct: 453 LPLRGKILNVEKAMQHKVFENEEIKNIYTALGVTIG------TEEDSKALNLDKLRYHKV 506

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F F    + I    +       L L+  G K +        
Sbjct: 507 IIMCDADVDGSHIETLILTFFFRYMRELIEGGHVY-IATPPLYLVKKGSKKRYAWNDKER 565

Query: 724 DTIFSI-----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           D I        G  G  +QRYKGLGEMNA QLW+TT+NP+ R+L +V I +A+++D +FS
Sbjct: 566 DAIVEELSTSSGSPG--IQRYKGLGEMNAEQLWDTTMNPEFRTLRQVTIDNATESDRIFS 623

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
            LMGDEV PRREFI+ N++ + +D+
Sbjct: 624 MLMGDEVPPRREFIERNAVYANIDV 648


>gi|330507223|ref|YP_004383651.1| DNA gyrase subunit B [Methanosaeta concilii GP-6]
 gi|328928031|gb|AEB67833.1| DNA gyrase, B subunit [Methanosaeta concilii GP-6]
          Length = 630

 Score =  608 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 290/644 (45%), Positives = 417/644 (64%), Gaps = 16/644 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+      YDA  IQ+L+GL+AV++RPSMYIG TD   GLHH++YEV+DN++DE+L G+
Sbjct: 1   MSEAT---GYDASHIQVLEGLEAVRRRPSMYIGSTDSL-GLHHLVYEVVDNSVDEALGGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+N  GS ++ D+GRGIP D H +    A E+++T LHAGGKF+ +SY VSGGL
Sbjct: 57  CSEIDVTINPGGSVSIRDDGRGIPVDNHPQFNRPALEIVLTVLHAGGKFDHESYGVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W++++++R G IY   F  G + + L   G + + TGT +TF P + 
Sbjct: 117 HGVGVSVVNALSEWMEVQVRRNGRIYWQRFEKGKVVSDLEERG-SSDHTGTTITFKPDTS 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F++DTL  RLREL+FLN  ++I++ D RS +       Y GGI +FV YL+++K
Sbjct: 176 IFEETEFSFDTLSSRLRELAFLNRGLKITIKDDRSDKEN--IFQYAGGIISFVEYLNKNK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L + P+    S++   +++A+++N+ Y EN+  + N I  ++GGTHL G R+ALTR +
Sbjct: 234 EVLHEQPVYFSRSKNGTQVEVALQYNNSYAENIFSYANIINTREGGTHLMGFRAALTRTV 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y   +    K++  + G+D REG  +V+S+K+PDP+F  QTK +L +S +R +VES V
Sbjct: 294 NDYARNNK-LFKNEMKLGGEDLREGLVAVISVKLPDPQFEGQTKTRLGNSSIRGIVESMV 352

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +GL  + EE+PL A  IV+K  +A   R+AAR+A++LTRRK  L    LPGKLADCS+ 
Sbjct: 353 AEGLGEYFEENPLVATTIVEKAAEAMRAREAARKAKELTRRKNALSSGGLPGKLADCSDN 412

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP K E+++VEG+SAGGSAKQGR+R  QAILPLRGKILNVERAR DK+L + EI  +I A
Sbjct: 413 DPAKCEIYIVEGESAGGSAKQGRNRHFQAILPLRGKILNVERARLDKILKNAEIRNMIVA 472

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTG+G D FDI+K RYHK++IMTDADVDG+HIRTLLLTFF+R M  LI  G+++I +PP
Sbjct: 473 FGTGVG-DDFDISKARYHKVVIMTDADVDGSHIRTLLLTFFYRYMRPLIDAGYVFIAQPP 531

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y   +E L +  +   +++ +       G ++   L         +D  
Sbjct: 532 LYQVKKGKQANYAYSDEQLNE--LVAGMNKPVIQRYKGLGEMNPEQLWET-----TMDPE 584

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +       +  +E   I  +   +  +     +        N 
Sbjct: 585 GRIMLRVTLEDAVEADRIFTILMGDQVEPRREFIEKHAKYVKNL 628



 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 11/202 (5%)

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             H +  +   +   + N E  +   +   +++ N +          +  S      +V 
Sbjct: 436 NRHFQAIL--PLRGKILNVERARLDKILKNAEIRNMIVAFGTGVGDDFDISKARYHKVVI 493

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
                V    +      F +      I +  +       L  +  G +         L+ 
Sbjct: 494 MTDADVDGSHIRTLLLTFFYRYMRPLIDAGYVF-IAQPPLYQVKKGKQANYAYSDEQLNE 552

Query: 726 IFSIGRKGIS---MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           + +    G++   +QRYKGLGEMN  QLWETT++P+ R +LRV + DA +AD +F+ LMG
Sbjct: 553 LVA----GMNKPVIQRYKGLGEMNPEQLWETTMDPEGRIMLRVTLEDAVEADRIFTILMG 608

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+VEPRREFI++++     LDI
Sbjct: 609 DQVEPRREFIEKHAKYVKNLDI 630


>gi|323703937|ref|ZP_08115567.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531095|gb|EGB21004.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 636

 Score =  608 bits (1569), Expect = e-171,   Method: Composition-based stats.
 Identities = 308/586 (52%), Positives = 406/586 (69%), Gaps = 3/586 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           + Q + Y AD IQ+L+GL+AV++RP MYIG T    GLHH++YEV+DN+IDE+L G+ + 
Sbjct: 2   DQQINKYSADQIQVLEGLEAVRRRPGMYIGSTSS-RGLHHLVYEVVDNSIDEALAGFCNR 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I+V ++ D S TV DNGRGIP DLH + G  A EV++T LHAGGKF    YKVSGGLHGV
Sbjct: 61  ISVVIHKDNSVTVEDNGRGIPVDLHPKVGKPAVEVVLTMLHAGGKFGGGGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L++ IKR GNIY  ++  G+  + L + G +   TGT+VTF P  +IF 
Sbjct: 121 GVSVVNALSEKLEVEIKRNGNIYHQAYSRGVPVSELKIIGKSK-STGTKVTFKPDPEIFE 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+ +TL  RLREL++LN  V+I++ D+R   P E T  + GGI  FV +L+R+K+ L
Sbjct: 180 ETTFSLETLVQRLRELAYLNKGVKITIKDERKDPPVEQTFQFDGGIRDFVKHLNRNKQVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI + G ++ I +++A+++ND Y+EN+L F NNI   DGGTH  G ++ALTR +  Y
Sbjct: 240 HSKPIYVTGEKEQIIVEIALQYNDTYNENILSFANNIHTVDGGTHEIGFKTALTRVVNDY 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
                  K    ++ G+D REG T V+S+K+ +P+F  QTK KL +SEVR +V+S   DG
Sbjct: 300 GRNHNLLKNSDPNLSGEDIREGATVVISVKVREPQFEGQTKTKLGNSEVRGIVDSIFADG 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +LEE+P   K I++K + A+  R+AAR+AR+LTRRK  LD  SLPGKLADCSE+DP 
Sbjct: 360 LATYLEENPTVGKRIIEKAITAARAREAARKARELTRRKSALDTMSLPGKLADCSEKDPS 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L+++EI  +ITALG 
Sbjct: 420 VSELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARMDKILANEEIRAMITALGC 479

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG   FDI+K RYHKIIIMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +PPL+ 
Sbjct: 480 GIG-QDFDISKARYHKIIIMTDADVDGAHIRTLLLTFFYRHMRPLIEAGYVYIAQPPLFR 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + +GK   YV  +  LE+ L                G ++   L  
Sbjct: 539 VRKGKLDSYVYSDHELEELLKRVGYDNVNIQRYKGLGEMNPEQLWE 584



 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +     + +  S      ++      V    +    
Sbjct: 453 ILNVEKARMDKILANEEIRAMITALGCGIGQDFDISKARYHKIIIMTDADVDGAHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  +        +     L + +  +G   +++QRYK
Sbjct: 513 LTFFYRHMRPLIEAGYVYIAQPPLFRVRKGKLDSYVYSDHELEELLKRVGYDNVNIQRYK 572

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT++PDTR++L+V + DA +AD  FS LMGD VEPRR+FIQEN+    
Sbjct: 573 GLGEMNPEQLWETTMDPDTRTVLQVTLEDAIEADATFSMLMGDRVEPRRDFIQENAQYVR 632

Query: 800 ALDI 803
            LDI
Sbjct: 633 NLDI 636


>gi|150020566|ref|YP_001305920.1| DNA gyrase, B subunit [Thermosipho melanesiensis BI429]
 gi|149793087|gb|ABR30535.1| DNA gyrase, B subunit [Thermosipho melanesiensis BI429]
          Length = 627

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 273/582 (46%), Positives = 380/582 (65%), Gaps = 9/582 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y+A +I++LKGL+ V++RP MYIG T G++GLHH++YE++DN++DE+L+GY D I VT+
Sbjct: 2   DYNAQNIKVLKGLEPVRQRPGMYIGST-GKAGLHHLVYEIVDNSVDEALQGYCDKIYVTI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DGS  + DNGRGIP D+H E G SA EV+MT LHAGGKF++ SYKVSGGLHGVG SVV
Sbjct: 61  FKDGSVEIKDNGRGIPVDIHPETGKSALEVVMTTLHAGGKFSKDSYKVSGGLHGVGASVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL++ + R+G IY   +  G     + + G   +  GT V F P ++IFS  +F+
Sbjct: 121 NALSEWLEVEVHRDGKIYYQKYQRGTPLTEVRIIGET-DYRGTIVRFKPDTEIFSTVEFD 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
            DT+  RLREL+FLN ++ +   D+R  E  E T  + GG++ FV +L +  + L   PI
Sbjct: 180 SDTILIRLRELAFLNPNITVVFKDER--ENIEKTFHFTGGLKEFVVHLSKGTRSLH-EPI 236

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G  ++I +D+  ++     E +  F NNI   DGGTH++G ++A TR +    +K+ 
Sbjct: 237 LVSGEYNSIKVDVCFQYTASDFEKIYSFVNNIRTVDGGTHVTGFKTAFTRVVNELGKKTG 296

Query: 309 GSKKDKRSVIGDDCREGFTSVLSI-KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
                K ++ G+D REG  +++S+     P F  QTK KL + EV+  V   V + L  +
Sbjct: 297 QL--KKDTLRGEDIREGIVAIVSVLMSKTPEFEGQTKSKLGNEEVQEAVAKVVREKLLEY 354

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            E +    KII++K L+A   R+AA+ AR++ +RK V   +SLPGKLADC  +  ++SEL
Sbjct: 355 FESNENTLKIIIQKALEAKKAREAAKHAREMIKRKSVFGSSSLPGKLADCITKKMEESEL 414

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQ R R  QAILPLRGKILNVE++ + K+L +++I  +ITALGTGIG 
Sbjct: 415 FIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSWLKLLKNEQIRDIITALGTGIG- 473

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FDI+KLRY KIIIMTDADVDGAHIRTLLLT F+R M  LI  G +YI +PPLY +   
Sbjct: 474 DDFDISKLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMKELIDEGRIYIAQPPLYKVNVN 533

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           K + Y   +E LE++  N    +         G ++   L  
Sbjct: 534 KKIYYFYSDEELEEFKENLKDKKFEIQRYKGLGEMNPQQLWE 575



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E    + +    ++ + +  +       +  S      ++      V    +    
Sbjct: 444 ILNVEKSSWLKLLKNEQIRDIITALGTGIGDDFDISKLRYGKIIIMTDADVDGAHIRTLL 503

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               +    + I   RI      +  +  N           L +   ++  K   +QRYK
Sbjct: 504 LTLFYRYMKELIDEGRIYIAQPPLYKVNVNKKIYYFYSDEELEEFKENLKDKKFEIQRYK 563

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT++P+ R LL+V+I DA +AD+LF  LMG + E R+EFI  ++L   
Sbjct: 564 GLGEMNPQQLWETTMDPEKRKLLKVEIEDAEEADELFEMLMGSDTESRKEFIFRHALQVK 623

Query: 800 ALDI 803
            +DI
Sbjct: 624 EIDI 627


>gi|325846392|ref|ZP_08169361.1| DNA gyrase, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481576|gb|EGC84616.1| DNA gyrase, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 634

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 281/585 (48%), Positives = 404/585 (69%), Gaps = 5/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N+ Y+A +I++LKGL+ V+ RP MYIG T  E GLHH++YEV+DN++DE+L G  D I
Sbjct: 1   MDNTQYNASNIRVLKGLEPVRLRPGMYIGSTS-ERGLHHLVYEVVDNSVDEALAGRCDYI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            ++++ +   TV D+G GIP + H + G S  E ++T LHAGGKF+ K+YKVSGGLHGVG
Sbjct: 60  KISIDENNIVTVEDDGSGIPIEKHPQTGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS +L   +KREG+IY M+F  G   + L + G    +TGT+++F    +IF V
Sbjct: 120 VSVVNALSEYLIAEVKREGHIYRMTFERGKPTSDLEIIGDTK-ETGTKISFKADPEIFDV 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             +N +TL++R RE++FLN  V+  LI +   +  E+   Y GGI+ FV YL+R+K P+ 
Sbjct: 179 TVYNKNTLENRFREMAFLNKGVR--LIFEDKRDESEVEFKYDGGIKEFVKYLNRNKTPIF 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +     +G +++  ++++ ++ DGY EN+L F NNI   +GGTHLSG RSALTR +  Y 
Sbjct: 237 KEIPYFEGRQESTEVEISFQYTDGYSENILTFANNIYTVEGGTHLSGFRSALTRSVNDYA 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K+++ ++ GDD REG T+++S+K+ +P+F  QTK KL +SEVR  V++F ++ +
Sbjct: 297 RKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDAFFSEHM 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
            ++LEE+P  AK I++K L +   R+AAR+ARDLTR++ +LD  +LPGKLADC  +D  +
Sbjct: 357 GSFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQSQDIGE 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+F+VEG+SAGGSAK GR    QAILPLRGKI+NVE+A  D++L+ +EI ++ITA GTG
Sbjct: 417 NEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMITAFGTG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG   FD++KLRY KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY I
Sbjct: 477 IG-QEFDLSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPPLYKI 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + GK  +Y   ++ LED +    +           G ++   L  
Sbjct: 536 SSGKKERYCYTDKELEDIVKEWKVDNYKISRYKGLGEMNAEQLWE 580



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 14/203 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + N E  + +  +  + +    +    +  K           +
Sbjct: 443 LPLRGKIMNVEKANLDRILNYEEIKSMITAFGTGIGQEFDLSKLRYGK-----------I 491

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F +      +    I      +  +     +        L 
Sbjct: 492 IIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPPLYKISSGKKERYCYTDKELE 551

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV--KITDASQADDLFSRLM 781
           D +         + RYKGLGEMNA QLWETT++P+ R LL+V  K       D  FS LM
Sbjct: 552 DIVKEWKVDNYKISRYKGLGEMNAEQLWETTMDPENRVLLQVYEKEDSQMSTDATFSMLM 611

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           G++VEPRREFI+EN+     LD+
Sbjct: 612 GEKVEPRREFIEENAQYVENLDV 634


>gi|295106380|emb|CBL03923.1| DNA gyrase subunit B [Gordonibacter pamelaeae 7-10-1-b]
          Length = 656

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 298/654 (45%), Positives = 403/654 (61%), Gaps = 26/654 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   +   YD   IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DNA+DE+L GY
Sbjct: 1   MSVANKPDHYDGSDIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNAVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S TV DNGRGIP D H +E I   EV++T LHAGGKF  + YKVSGGL
Sbjct: 60  CDTIEVWIHPDNSITVDDNGRGIPVDKHPKEKIPTVEVVLTILHAGGKFGGEGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS +++ + +EG  Y++SF +G     L   G      GT VTF P   
Sbjct: 120 HGVGVSVVNALSSRVEVSVFKEGVQYDISFDHGKTAEKLREVGKVRRGNGTTVTFWPDPT 179

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----------PEPREITMFYKGGI 229
           IF+    ++YDTL  R RE++FLN  ++I L D+R           PEPR     Y GGI
Sbjct: 180 IFTDTTVYDYDTLASRFREMAFLNKGLKIILHDERVNPGSTLSDLAPEPRTEVFQYAGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTH 288
             FV +L+  K+ L   PI  +   D+ ++++AM+W+  Y  N V+ F NNI   +GGTH
Sbjct: 240 VDFVKFLNEGKETLN-KPIYFEAENDDGTVEVAMQWSSSYSTNSVMAFANNINTHEGGTH 298

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G + A+TR I  Y       K+   ++ GDD REG  +++S+K+ DP+F  QTK KL 
Sbjct: 299 LDGFKQAVTRTINEYARAKGILKEKDSNLSGDDTREGCAAIISVKLHDPQFEGQTKTKLG 358

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E+R +V++ V  GL+ +LEE+P  AK I+ K   A   R+AAR+AR++TRRKGVLD  
Sbjct: 359 NTEIRPLVQNAVTQGLAEYLEENPKPAKRIIDKATQALKAREAARKAREMTRRKGVLDSF 418

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS + P  SE+F+VEGDSAGGSAKQ R R+ QAILPLRGKILNVERA   + 
Sbjct: 419 ALPGKLADCSSKTPADSEIFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVERAGLHRS 478

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           LSS  I +LITA+GT IG D FD ++ RYH+IIIMTDADVDGAHIR LLLTFF+R MP L
Sbjct: 479 LSSDTISSLITAIGTNIG-DDFDADQARYHRIIIMTDADVDGAHIRCLLLTFFYRYMPEL 537

Query: 529 IHNGFLYIIKPPLYGITRGKS-----LQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVI 582
           I+ G++YI +PP++G+ +  S      +Y+ DE +L   L    +  +         G +
Sbjct: 538 INRGYIYIAQPPIFGLKKKNSRSPKIERYIYDESALGSVLAEYDNPDKFDVQRYKGLGEM 597

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             + L         ++   +     +     E   +      +  +     +  
Sbjct: 598 DPDQLWET-----TMEPETRTLLQVNIDDAAEAERVVSELMGDQVEPRKEFIQK 646



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+ P+TR+LL+V I DA++A+ + S LMGD+VEPR+EFIQ++
Sbjct: 588 VQRYKGLGEMDPDQLWETTMEPETRTLLQVNIDDAAEAERVVSELMGDQVEPRKEFIQKH 647

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 648 ARDVRFLDI 656


>gi|55377342|ref|YP_135192.1| DNA gyrase subunit B [Haloarcula marismortui ATCC 43049]
 gi|55230067|gb|AAV45486.1| DNA gyrase subunit B [Haloarcula marismortui ATCC 43049]
          Length = 642

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 293/591 (49%), Positives = 393/591 (66%), Gaps = 11/591 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++  Y A SIQ L+GL+AV+KRP+MYIG TD   GLHH++YEV+DNAIDE+L GY D I 
Sbjct: 4   ESDEYGAKSIQTLEGLEAVQKRPAMYIGSTDA-RGLHHLVYEVVDNAIDEALAGYCDNID 62

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ DGS +VSD+GRGIP D H+E G  A EV+MT LHAGGKF+ KSY+VSGGLHGVGV
Sbjct: 63  VTIHDDGSVSVSDDGRGIPVDTHEEHGRPAVEVVMTILHAGGKFDNKSYQVSGGLHGVGV 122

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFS 183
           SVVNALS WL++ ++R+G +++  F +G  +  L          +TGT V F P  +IF 
Sbjct: 123 SVVNALSKWLEVEVRRDGALWKQRFDHGKPEYDLKKVRDLKPDEETGTTVRFWPDDEIFE 182

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F + TL  RLREL+FLNS V IS+ D+R  E    T  Y GGI  FV YL+  K PL
Sbjct: 183 TGEFKFSTLSSRLRELAFLNSGVAISIDDERDGET--ETFAYDGGIREFVEYLNETKDPL 240

Query: 244 MQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            +  I  +   +     + +++AM+  D    ++  F NNI  ++GGTHL+G +++LTR 
Sbjct: 241 HRDIIYFEDEEEIAEGPVQVEIAMQGTDDLQGSIHAFANNINTREGGTHLTGFKTSLTRV 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y   +   K    ++ GDD REG T+V+S+K PDP+F  QTK KL +SEVR +VES 
Sbjct: 301 INDYATDNNLLKDLDDTLKGDDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESA 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           ++DGL+ + EE+P  A+ IV K ++A+  R AA++A +LTRRK  LD  +LPGKLADC  
Sbjct: 361 MHDGLATFFEENPDTAEAIVGKAVEAAKARKAAQKAEELTRRKSALDSTALPGKLADCQT 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP+++ELF+ EGDSAGGSAKQGR+ + QAILP++GKILNVE+ R D++L + EI  LIT
Sbjct: 421 RDPEEAELFIAEGDSAGGSAKQGRNPDFQAILPIKGKILNVEKHRLDRILENNEIRNLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG D FDI  LRY KII+MTDADVDGAHIRTLLLT F+R M  L+  G++Y  +P
Sbjct: 481 ALGTGIG-DEFDIEDLRYEKIILMTDADVDGAHIRTLLLTLFYRHMKPLLEAGYVYASQP 539

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589
           PLY I    +      +   +  +  +   +          G ++   L  
Sbjct: 540 PLYRIRYRGNTYDAMTDAERDQIIEEKCDGNPTHVQRFKGLGEMNPEQLWE 590



 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMN  QLWETT+NPD R L ++ I DA+ AD +F+ LMGD VEPR+EFI+E+
Sbjct: 574 VQRFKGLGEMNPEQLWETTMNPDNRILKQITIEDAAAADKMFNILMGDAVEPRKEFIKEH 633

Query: 796 SLPSA-LDI 803
           S  +  +DI
Sbjct: 634 SPEAEWVDI 642


>gi|332300337|ref|YP_004442258.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica DSM 20707]
 gi|332177400|gb|AEE13090.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica DSM 20707]
          Length = 657

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 285/579 (49%), Positives = 382/579 (65%), Gaps = 10/579 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +  +Y A SIQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L GY
Sbjct: 9   MTTPQEKGAYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEALAGY 67

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              + V +  D S  V+DNGRGIP D+H +EG SA EV+MT LHAGGKF++ SYKVSGGL
Sbjct: 68  CTEVLVEILSDNSIQVTDNGRGIPVDMHAKEGKSALEVVMTVLHAGGKFDKGSYKVSGGL 127

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L   + R+G IY   +  G     + V G A +DTGT +TF P   
Sbjct: 128 HGVGVSCVNALSESLIAEVHRDGKIYRQEYSRGKPLTGVEVVGKA-DDTGTRITFKPDDT 186

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYL 236
           IF    ++ +TL HRLRELS+LN+ + + LID R  +    P+    + + G+  FV Y+
Sbjct: 187 IFRETIYSSETLSHRLRELSYLNAGLHLKLIDHRVHDEEGQPKSWIFYSENGLSEFVRYV 246

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           D  K+ L+   I     +  + +++A+ +N  Y ENV  + N+I   +GGTHL+G R  L
Sbjct: 247 DGAKESLIHDVIHHTTEKQGVPVEVALTYNTSYQENVYTYVNDIHTIEGGTHLTGFRRGL 306

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y   S    K K  + GDD REG T+++S+K+ +P+F  QTK KL +SE+  VV
Sbjct: 307 TRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNSEIVGVV 366

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ++ V++ L  +LEEHP EAK+IV KV+ A+  R AARRAR+L +RK  L    LPGKLAD
Sbjct: 367 DAAVSEALEIYLEEHPTEAKLIVDKVILAAQARHAARRARELVQRKSPLTGGGLPGKLAD 426

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS +DP + ELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVE+A   ++L + EI  
Sbjct: 427 CSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKAMQHRILDNAEIKN 486

Query: 477 LITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           + TALG  +G +        +KLRYHKIIIMTDADVDGAHI TL+LTFFFR M  LI NG
Sbjct: 487 IYTALGVTVGTEEDSKALNLSKLRYHKIIIMTDADVDGAHIATLILTFFFRNMRPLIENG 546

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           ++YI  PPLY   + +  +Y   +E   D++      +E
Sbjct: 547 YVYIANPPLYLCKKDRIEEYCWTDEQKSDFVTKYGNGQE 585



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 54/69 (78%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           I +QRYKGLGEMN  QLW+TT+NP TR+L +V I + + AD +FS LM ++VEPRREFI+
Sbjct: 588 IKIQRYKGLGEMNDVQLWDTTMNPQTRTLRQVTIDNLASADSVFSMLMSEDVEPRREFIE 647

Query: 794 ENSLPSALD 802
           EN+  + +D
Sbjct: 648 ENATYANID 656


>gi|257470425|ref|ZP_05634516.1| DNA gyrase subunit B [Fusobacterium ulcerans ATCC 49185]
 gi|317064633|ref|ZP_07929118.1| DNA topoisomerase [Fusobacterium ulcerans ATCC 49185]
 gi|313690309|gb|EFS27144.1| DNA topoisomerase [Fusobacterium ulcerans ATCC 49185]
          Length = 635

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 270/585 (46%), Positives = 384/585 (65%), Gaps = 5/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++Y A++I +L+GL+AV+KRP MYIG T  E GLHH+++E++DNA+DE+L GY D I V
Sbjct: 2   SNNYQAENITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNAVDEALAGYCDKIIV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  D    V DNGRGIP  +H +   SA E+++T LHAGGKF   +YKVSGGLHGVGVS
Sbjct: 61  NILPDNIIEVIDNGRGIPVGIHPKYNKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W  + +K +G I+   +  GI +  +   G   +  GT V F    +IF    
Sbjct: 121 VVNALSEWTDVTVKTDGKIWYQKYNRGIPEEDVKEIGVTTDH-GTSVRFKADHEIFETLI 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++Y+TL++RL+EL++LN  ++I L D R    ++    ++GGI  F+  +    + L+  
Sbjct: 180 YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKKEEFKFEGGIVDFLKEITEETEKLIPE 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI + G  DN+++D+A  +     E +  F NNI   +GGTH+SG R+ALTR I    + 
Sbjct: 240 PIYMSGEVDNVTVDIAFLYTVNQAEVIYSFVNNINTHEGGTHVSGFRTALTRVINDVGKA 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K+    + G+D REG T+++S+K+P P+F  QTK KL +SEV  +V + V   L  
Sbjct: 300 QGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVSTLVGTNLKI 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
            LE++P + KII++K+L++   R+AA++AR+L  RK VL++ SLPGKLADCS ++P + E
Sbjct: 360 VLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCSSKNPDECE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R +QAILPLRGKILNVE+A   K L + E+  +ITA GT IG
Sbjct: 420 IYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNEVRAMITAFGTSIG 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            DSF+I KLRY KII+MTDADVDGAHIRTLLLTF +R M  LI+NG +YI +PPLY IT 
Sbjct: 480 -DSFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRFMVDLIYNGNVYIAQPPLYKITT 538

Query: 547 GKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           GK ++Y   ++ L++        +           G ++   L +
Sbjct: 539 GKQIRYAYTDKELKEITDVFEGDDRKYTLQRYKGLGEMNPEQLWD 583



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/73 (63%), Positives = 59/73 (80%), Gaps = 1/73 (1%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +  ++QRYKGLGEMN  QLW+TT+NPDTR+LL+V I DA  AD LF +LMGD+V+PRREF
Sbjct: 563 RKYTLQRYKGLGEMNPEQLWDTTMNPDTRTLLQVTIDDARAADMLFDKLMGDKVDPRREF 622

Query: 792 IQENSLPS-ALDI 803
           I+EN++    LDI
Sbjct: 623 IEENAVYVKNLDI 635


>gi|297528381|ref|YP_003669656.1| DNA gyrase subunit beta [Geobacillus sp. C56-T3]
 gi|319765163|ref|YP_004130664.1| DNA gyrase B subunit [Geobacillus sp. Y412MC52]
 gi|297251633|gb|ADI25079.1| DNA gyrase, B subunit [Geobacillus sp. C56-T3]
 gi|317110029|gb|ADU92521.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC52]
          Length = 638

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 300/589 (50%), Positives = 404/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +     +YDA  IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE+L GY  
Sbjct: 2   EQRVEQTYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAGYCT 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D S TV+DNGRGIP D+H+  G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 61  NIDVTIGKDNSITVADNGRGIPVDIHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS WL++ + R+G I+   +  G     L V G   + TGT   F P  +IF
Sbjct: 121 VGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIF 179

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +    F+Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V +L+R ++
Sbjct: 180 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE-YVYEGGIRSYVRHLNRTRE 238

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L + PI I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG + ALTR I 
Sbjct: 239 VLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIIN 298

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K    K++  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++  +
Sbjct: 299 DYARKQQIFKENDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFS 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS RD
Sbjct: 359 EQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSRD 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +ITAL
Sbjct: 419 PSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITAL 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  LI +G++YI +PPL
Sbjct: 479 GTGIGEE-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPL 537

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y I +GK ++Y  ++  LE  L       +         G ++   L  
Sbjct: 538 YKIEQGKQVRYAYNDRQLEKILAELPDQPKPTIQRYKGLGEMNPEQLWE 586



 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 133/334 (39%), Gaps = 41/334 (12%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGF----------------LYIIKPPLYGITRGK 548
           DA++ G  +R  L      + PS    G                 ++  +   + +    
Sbjct: 311 DANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPT 370

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             + + ++  +       +          S   IS  +L   + D    D  I + Y   
Sbjct: 371 IARKIVEKGMMAARARLAAKKARELTRRKSALEIS--NLPGKLADCSSRDPSISELYVVE 428

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDI 662
             +    A      + ++   +   + +    RL+ I   +E          G     DI
Sbjct: 429 GDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGIGEEFDI 488

Query: 663 LVKRIAR-GVQEQFVLEGSSIFSFGSKY-KRIFSNRIEENYL----TILSLICNGDKIKI 716
              R  +  +     ++G+ I +    +  R     IE  Y+      L  I  G +++ 
Sbjct: 489 SKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPLYKIEQGKQVRY 548

Query: 717 TGPCSLLDTIFSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
                 L+ I +     +      ++QRYKGLGEMN  QLWETT+NP+TR+LL+V + DA
Sbjct: 549 AYNDRQLEKILAE----LPDQPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDA 604

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             AD+ F  LMGD+VEPRR+FI+EN+     LDI
Sbjct: 605 IDADETFEILMGDKVEPRRQFIEENARYVKNLDI 638


>gi|256848502|ref|ZP_05553944.1| DNA gyrase, B subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256714769|gb|EEU29748.1| DNA gyrase, B subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 656

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/586 (48%), Positives = 396/586 (67%), Gaps = 6/586 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S YDA  IQ+LKGL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+ D I V 
Sbjct: 21  SKYDASQIQVLKGLEAVRKRPGMYIGSTTAQ-GLHHLVWEIVDNGIDEALAGFTDEINVV 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  D S TV+DNGRGIP D+ KE G  A E + T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 80  VEPDNSITVTDNGRGIPVDIQKETGKPALETVFTVLHAGGKFGNGGYKVSGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ L +R+ R+G  Y M F  G +  P+ V          GT V F P  DIF   
Sbjct: 140 VNALSTELDVRVARQGKEYYMDFQGGHVKTPMKVIKEGLPETQHGTIVHFKPDPDIFRET 199

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             +N  TL  R+REL+FLN  ++I++ DKR+ E       Y+GGI  +V +L+R  + + 
Sbjct: 200 TVYNIKTLTDRIRELAFLNKGLKITIEDKRNDEDNRQEFHYEGGIRHYVEFLNRGHELIF 259

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             PI ++G  + I++++++++  GY  N+L FTNNI   +GG+H +G ++ALTR I  Y 
Sbjct: 260 DPPIYVEGEYNGITVEVSLQYTSGYRCNLLTFTNNIHTYEGGSHETGFKTALTRVINDYG 319

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            KS   K +  ++ GDD REG T+V+SIK P+P+F  QTK KL +S+ R+  +   ++ +
Sbjct: 320 RKSGQLKGNNSTLSGDDVREGLTAVVSIKHPNPQFEGQTKTKLSNSDARTATDHIFSETM 379

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + ++ EHP  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLAD + +DP  
Sbjct: 380 NRFMMEHPDTAKKIVEKGMLASKARVAAKRAREVTRKKSGLEISNLPGKLADNTSKDPSI 439

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  +++L++ EI +L TALGTG
Sbjct: 440 SELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASLNRVLANDEIRSLFTALGTG 499

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G+D FD++K  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPLY +
Sbjct: 500 FGED-FDVSKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPMIEKGYVYIAQPPLYQV 558

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            +GK ++Y++ +E LE  + +   S + +       G +    L  
Sbjct: 559 RQGKFVKYIETDEELEQVVNSLQPSPKPVIQRYKGLGEMDAEQLWE 604



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R LLRV + DA+ AD++F  LMG +V PRR+FI++N
Sbjct: 588 IQRYKGLGEMDAEQLWETTMDPENRHLLRVDLDDAAAADEIFPMLMGTKVGPRRDFIEKN 647

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 648 ATFVKNLD 655


>gi|330997801|ref|ZP_08321636.1| DNA gyrase, B subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329569689|gb|EGG51454.1| DNA gyrase, B subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 655

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/606 (47%), Positives = 385/606 (63%), Gaps = 19/606 (3%)

Query: 1   MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  I+ ++Y A SIQ+L+GL+AV+KRP+MYIGD   E GLHH++YE +DN+IDE+L G
Sbjct: 1   MSEEEIKGTNYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYETVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV DNGRGIP D+H++E  SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCTHIEVTINEDNSITVQDNGRGIPVDMHEKEHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +  ++ REG IY+  +  G    P+ V G      GT   F P S
Sbjct: 120 LHGVGVSCVNALSTHMLSQVFREGKIYQQEYECGKPLYPVKVVGETE-LRGTRQQFWPDS 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235
            IF    + Y+ L +R+REL+FLN+ + I L D R  +    PR  T   K G++ FV Y
Sbjct: 179 SIFITTTYKYEILANRMRELAFLNAGITIILTDMREKDENGVPRSETFHSKDGLKEFVRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D  +  L    I +   +  + I++A+ +N+GY EN+  + NNI   +GGTHL+G R+A
Sbjct: 239 IDSSRIHLFNDVIYLNTEKQGVPIEVAIMYNNGYTENIHSYVNNINTIEGGTHLAGFRTA 298

Query: 296 LTRQITSYVEKSF-----GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           LTR +  Y E  +       +K+K  + G+D REG T+V+SIK+ +P+F  QTK KL +S
Sbjct: 299 LTRTLKKYAEDEYAKELEKLEKNKVEISGEDFREGLTAVISIKVAEPQFEGQTKTKLGNS 358

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV   V+  V + LS +LEEHP EAK+IV KV+ A+  R AAR+AR+  +RK  +    +
Sbjct: 359 EVAGAVQQAVGEALSYYLEEHPKEAKLIVDKVILAATARVAARKARESVQRKSPMSGGGM 418

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS++D    ELF+VEGDSAGGSAKQGRSR+ QAILP+RGKI NVER  + K   
Sbjct: 419 PGKLADCSDKDAANCELFIVEGDSAGGSAKQGRSRQYQAILPIRGKIFNVERVMWHKAFE 478

Query: 471 SQEIGTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +E+  +I ALG   G        +  KLRY+K+IIMTDADVDG+HI TLL+T F+R MP
Sbjct: 479 HEEVNNIIQALGVRFGLGEDSKEANYEKLRYYKVIIMTDADVDGSHIDTLLMTLFYRYMP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVIS 583
            LI  G LYI  PPLY   +GK  +Y   E     ++   +   E  +        G ++
Sbjct: 539 ELIQKGHLYIATPPLYRCKKGKIEEYCYTEADRLRFMQQYNNGSEQGMTTQRYKGLGEMN 598

Query: 584 KNDLRN 589
              L  
Sbjct: 599 PEQLWE 604



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 5/206 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +      +  I  V      +       + +   L       E S   +     
Sbjct: 449 QGRSRQYQAILPIRGKIFNVERVMWHKAFEHEEVNNIIQALGVRFGLGEDSKEANYEKLR 508

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
                I            + + +   +Y      +      T     C   KI+      
Sbjct: 509 YYKVIIMTDADVDGSHIDTLLMTLFYRYMPELIQKGHLYIATPPLYRCKKGKIEEYCYTE 568

Query: 722 L-----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 +    +   +G++ QRYKGLGEMN  QLWETT+NP+TR L +V I DA+ AD +
Sbjct: 569 ADRLRFMQQYNNGSEQGMTTQRYKGLGEMNPEQLWETTMNPETRLLKQVTIEDAAGADYV 628

Query: 777 FSRLMGDEVEPRREFIQENSLPSALD 802
           FS LMG++V PRREFI++N+  + +D
Sbjct: 629 FSMLMGEDVGPRREFIEQNATYANID 654


>gi|56418540|ref|YP_145858.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426]
 gi|56378382|dbj|BAD74290.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426]
          Length = 638

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 300/589 (50%), Positives = 404/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +     +YDA  IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE+L GY  
Sbjct: 2   EQRVEQTYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAGYCT 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D S TV+DNGRGIP D+H+  G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 61  NIDVTIGKDNSITVADNGRGIPVDIHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS WL++ + R+G I+   +  G     L V G   + TGT   F P  +IF
Sbjct: 121 VGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIF 179

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +    F+Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V +L+R ++
Sbjct: 180 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE-YVYEGGIRSYVRHLNRTRE 238

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L + PI I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG + ALTR I 
Sbjct: 239 VLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIIN 298

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K    K++  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++  +
Sbjct: 299 DYARKQQIFKENDTNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFS 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS RD
Sbjct: 359 EQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSRD 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +ITAL
Sbjct: 419 PSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITAL 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  LI +G++YI +PPL
Sbjct: 479 GTGIGEE-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPL 537

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y I +GK ++Y  ++  LE  L       +         G ++   L  
Sbjct: 538 YKIEQGKQVRYAYNDRQLEKILAELPDQPKPTIQRYKGLGEMNPEQLWE 586



 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 14/204 (6%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +  +     + +  S      ++  
Sbjct: 442 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRAIITALGTGIGEEFDISKARYHKVIIM 499

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I      +  +               L+ I
Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPLYKIEQGKQVRYAYNDRQ-LEKI 558

Query: 727 FSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            +     +      ++QRYKGLGEMN  QLWETT+NP+TR+LL+V + DA  AD+ F  L
Sbjct: 559 LAE----LPDQPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADETFEIL 614

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+VEPRR+FI+EN+     LDI
Sbjct: 615 MGDKVEPRRQFIEENARYVKNLDI 638


>gi|332881729|ref|ZP_08449377.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680368|gb|EGJ53317.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 655

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 285/606 (47%), Positives = 385/606 (63%), Gaps = 19/606 (3%)

Query: 1   MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  I+ ++Y A SIQ+L+GL+AV+KRP+MYIGD   E GLHH++YE +DN+IDE+L G
Sbjct: 1   MSEEEIKGTNYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYETVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV DNGRGIP D+H++E  SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCTHIEVTINEDNSITVQDNGRGIPVDMHEKEHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +  ++ REG IY+  +  G    P+ V G      GT   F P  
Sbjct: 120 LHGVGVSCVNALSTHMLSQVFREGKIYQQEYECGKPLYPVKVVGETE-LRGTRQQFWPDG 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235
            IF    + Y+ L +R+REL+FLN+ + I+L D R  +    PR  T   K G++ FV Y
Sbjct: 179 SIFITTTYKYEILANRMRELAFLNAGITITLTDMREKDENGVPRSETFHSKDGLKEFVRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D  +  L    I +   +  + I++A+ +N+GY EN+  + NNI   +GGTHL+G R+A
Sbjct: 239 IDSSRIHLFNDVIYLNTEKQGVPIEVAIMYNNGYTENIHSYVNNINTIEGGTHLAGFRTA 298

Query: 296 LTRQITSYVEKSF-----GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           LTR +  Y E  +       +K+K  + G+D REG T+V+SIK+ +P+F  QTK KL +S
Sbjct: 299 LTRTLKKYAEDEYAKELEKLEKNKVEISGEDFREGLTAVISIKVAEPQFEGQTKTKLGNS 358

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV   V+  V + LS +LEEHP EAK+IV KV+ A+  R AAR+AR+  +RK  +    +
Sbjct: 359 EVAGAVQQAVGEALSYYLEEHPKEAKLIVDKVILAATARVAARKARESVQRKSPMSGGGM 418

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS++D    ELF+VEGDSAGGSAKQGRSR+ QAILP+RGKI NVER  + K   
Sbjct: 419 PGKLADCSDKDAANCELFIVEGDSAGGSAKQGRSRQYQAILPIRGKIFNVERVMWHKAFE 478

Query: 471 SQEIGTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +E+  +I ALG   G        +  KLRY+K+IIMTDADVDG+HI TLL+T F+R MP
Sbjct: 479 HEEVNNIIQALGVRFGLGEDSKEANYEKLRYYKVIIMTDADVDGSHIDTLLMTLFYRYMP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVIS 583
            LI  G LYI  PPLY   +GK  +Y   E     ++   +   E  +        G ++
Sbjct: 539 ELIQKGHLYIATPPLYRCKKGKIEEYCYTEADRLRFMQQYNNGSEQGMTTQRYKGLGEMN 598

Query: 584 KNDLRN 589
              L  
Sbjct: 599 PEQLWE 604



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 5/206 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +      +  I  V      +       + +   L       E S   +     
Sbjct: 449 QGRSRQYQAILPIRGKIFNVERVMWHKAFEHEEVNNIIQALGVRFGLGEDSKEANYEKLR 508

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
                I            + + +   +Y      +      T     C   KI+      
Sbjct: 509 YYKVIIMTDADVDGSHIDTLLMTLFYRYMPELIQKGHLYIATPPLYRCKKGKIEEYCYTE 568

Query: 722 L-----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 +    +   +G++ QRYKGLGEMN  QLWETT+NP+TR L +V I DA+ AD +
Sbjct: 569 ADRLRFMQQYNNGSEQGMTTQRYKGLGEMNPEQLWETTMNPETRLLKQVTIEDAAGADYV 628

Query: 777 FSRLMGDEVEPRREFIQENSLPSALD 802
           FS LMG++V PRREFI++N+  + +D
Sbjct: 629 FSMLMGEDVGPRREFIEQNATYANID 654


>gi|58696735|ref|ZP_00372279.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537087|gb|EAL60209.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 621

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 324/634 (51%), Positives = 430/634 (67%), Gaps = 20/634 (3%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  SGLHHM+YEV+DNAIDESL GY D I V++N DGS +V+DNGRGIPTD+H+
Sbjct: 1   MYIGDTDDGSGLHHMVYEVIDNAIDESLAGYCDKIEVSINKDGSVSVTDNGRGIPTDIHE 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEGISAAEVIMT+LHAGGKF+  +YKVSGGLHGVG+SVVNALSSWL+L I R    + M 
Sbjct: 61  EEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGISVVNALSSWLELTIWRNKKEHFMR 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F +G    PL V     N  GT+VTF+PS++ F+  +F+Y TL+ R+REL+FLNS++ I+
Sbjct: 121 FEDGESIEPLKVVNENTNKRGTKVTFMPSTETFNGINFSYSTLESRIRELAFLNSNIDIT 180

Query: 210 LIDKRSPEPREITMFYKGGIEA-----FVSYLDRHKKPLMQSPIRIQG--SRDNISIDLA 262
           L D R+    E         +               K  +     ++G      IS++++
Sbjct: 181 LRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNKTHVTKIASMKGDAEDLGISLEIS 240

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M WND Y+EN+LCFTNNI Q+DGGTHL+G RSALT+ I +Y       KK K ++ G+D 
Sbjct: 241 MEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSALTKCINTYATNEGFLKKAKVNLTGEDV 300

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T VLS+KMPDP+FSSQTK+KLVSSE R+VVES V+D LS  LE  P  A  IV++ 
Sbjct: 301 REGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESIVSDKLSTILETDPKLAASIVERA 360

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R+AAR+AR+L + K  +DIA+LPGKLADC E+ P+ SELF+VEG+SAGG+AKQG
Sbjct: 361 IRSAKGREAARKARELVKSKNNIDIATLPGKLADCQEKAPELSELFIVEGNSAGGTAKQG 420

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+R+ QA+L LRGKILNVER   D++ SS EIG+LITA+G GIG + FDI K RYHKIII
Sbjct: 421 RNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIEKARYHKIII 480

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDG+HIRTL+LTFFFR M  +I  G+LYI +PPLY +T+     Y+KD+E+ E+Y
Sbjct: 481 MTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNAKDTYIKDDETFEEY 540

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           +IN ++         ++     NDLR  ++  + I  + K++     +  +E  +I    
Sbjct: 541 IINSAVKRLTLSSTATE----FNDLRLILNKCVSISNISKNYDREIPQNLLESLLIL--- 593

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
                ++  +S A  +   L  +   SE +W   
Sbjct: 594 ----SKKNALSSADDILKYLKLM--YSEYTWEVE 621


>gi|228474124|ref|ZP_04058865.1| DNA gyrase, B subunit [Capnocytophaga gingivalis ATCC 33624]
 gi|228274638|gb|EEK13479.1| DNA gyrase, B subunit [Capnocytophaga gingivalis ATCC 33624]
          Length = 656

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 296/664 (44%), Positives = 418/664 (62%), Gaps = 26/664 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ +  + Y AD+IQ L+G++ V+ RPSMYIGD  G  GLHH++YEVLDN+IDE+L GY
Sbjct: 1   MSEQLDPNKYSADNIQSLEGMEHVRVRPSMYIGDV-GVRGLHHLVYEVLDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V +N D S TV DNGRGIP D+HK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDTISVVINPDNSVTVEDNGRGIPVDIHKKEGVSALEVVMTKIGAGGKFDKGSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVV+ALS+ L   + R+G I+E  +  GI    +   G      GT+VTFLP ++
Sbjct: 120 HGVGVSVVDALSTHLTATVFRDGKIWEQEYERGIALYQVKEKGKTE-KRGTKVTFLPDTE 178

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235
           IF    +FNYD L +R+REL+FLN  + I+L D R  +    P   T + + G+E F+ Y
Sbjct: 179 IFQQTVEFNYDILANRIRELAFLNKGIHITLTDLRHQDEKGAPISQTFYSEKGLEEFIQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD ++ P+++  I ++G ++ I +++AM +ND ++EN+  + NNI   +GGTHL G R  
Sbjct: 239 LDGNRTPIIKKIIAMEGEKNEIPVEVAMIYNDSFNENLHSYVNNINTHEGGTHLQGFRMG 298

Query: 296 LTRQITSYVEKSFGSK------KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           LTR + +Y +KS   +      K+   + GDD REG T+++S+K+ +P+F  QTK KL +
Sbjct: 299 LTRTLKNYADKSGLLEKASKDKKNPLEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGN 358

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            EV + V   V+D L ++LEE+P +AK IV KV+ A+  R AA++AR+  +RK  +  A 
Sbjct: 359 REVTAAVSQAVSDMLESYLEENPEDAKTIVNKVILAAQARLAAKKAREAVQRKSPMGGAG 418

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LP KLADC +++P+  ELFLVEGDSAGG+AKQGR ++ QAILPLRGKILNVE+A   ++ 
Sbjct: 419 LPNKLADCQDKNPENCELFLVEGDSAGGTAKQGRDQKFQAILPLRGKILNVEKAMQHRVF 478

Query: 470 SSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            ++EI  + TALG  IG +      +I+KLRYHKIIIM+DADVDG+HI TL+LTFFFR M
Sbjct: 479 ENEEIKNIYTALGVTIGTEEDAKALNISKLRYHKIIIMSDADVDGSHIATLILTFFFRYM 538

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
             LI  G +YI  PPLY + +GK  QY   +E  +         +E      +K  + + 
Sbjct: 539 RELIEEGHVYIATPPLYLLKQGKKEQYAWSDEERDAIT------KEFYEQAQTKVAVQRY 592

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN---VSLASKLANRL 642
                ++     D  +   +    K  IE AV +         +          K A   
Sbjct: 593 KGLGEMNAEQLADTTMDPRHRTLRKVTIENAVEADRIFSMLMGDDVPPRREFIEKNAKYA 652

Query: 643 NFIA 646
           N  A
Sbjct: 653 NIDA 656



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +    +  A    K  +  I    I+
Sbjct: 460 LPLRGKILNVEKAMQHRVFENEEIKNIYTALGVTIGTEEDAKALNISKLRYHKI----II 515

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSL 722
           +            L  +  F    +Y R              L L+  G K +       
Sbjct: 516 MSDADVDGSHIATLILTFFF----RYMRELIEEGHVYIATPPLYLLKQGKKEQYAWSDEE 571

Query: 723 LDTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            D I        +  +++QRYKGLGEMNA QL +TT++P  R+L +V I +A +AD +FS
Sbjct: 572 RDAITKEFYEQAQTKVAVQRYKGLGEMNAEQLADTTMDPRHRTLRKVTIENAVEADRIFS 631

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
            LMGD+V PRREFI++N+  + +D
Sbjct: 632 MLMGDDVPPRREFIEKNAKYANID 655


>gi|78707355|gb|ABB46483.1| DNA gyrase subunit B [Acholeplasma laidlawii]
          Length = 631

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 291/598 (48%), Positives = 398/598 (66%), Gaps = 6/598 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            NS Y AD+IQIL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD IT
Sbjct: 1   NNSHYTADNIQILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALGGYADEIT 59

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           + +       V+DNGRGIP D+H +    A E I+T LHAGGKF++ SYKVSGGLHGVG 
Sbjct: 60  IEILKGEVIRVTDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGA 119

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVN LS W  + I ++G IYE  +  GI    L + G+  + TGT ++F     IF+  
Sbjct: 120 SVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKIKGNT-DKTGTIISFQADPLIFTET 178

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             +NY+TL+ R+++L+FLN  ++++LID R  E +  +  Y+GGI  +V +L++ K  + 
Sbjct: 179 VIYNYETLRTRIQQLAFLNKGLKLNLIDDRFEESKIESFHYEGGITEYVKFLNQSKSKIH 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I I   +D I+++LAM++ D Y  N+  FTNNI   +GG H  G + ALTR I+ Y 
Sbjct: 239 NDIIYIDKEQDGITVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +          S+ G+D REG T+++S+K P+P+F  QTK KL + EVR++     ++ +
Sbjct: 299 DDLKMK--KDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAI 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P +AK IV+KVL A+  R AAR+A+DLTRRK  LD      KLADC  +DP+K
Sbjct: 357 ERFLMENPTQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEK 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+++VEGDSAGGSAKQGR  E QAI+PLRGK+LNVE+AR DKMLS++EI  LI A+GTG
Sbjct: 417 SEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  D FDI K RYHKI+IMTDADVDGAHIRTLLLTF FR M  LI  G++Y  +PPLY I
Sbjct: 477 I-SDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKI 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           + G++ QY  +E+ L + L        I+ +     + ++      +D A +    IK
Sbjct: 536 SWGRNFQYAYNEQELNEILKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 593



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 7/156 (4%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G  +  DI   R  + V      ++G+ I +    +  R     I+  Y       L  
Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           I  G   +       L+ I        S+QRYKGLGEM+A QLW+TT++P  R+LL++K+
Sbjct: 535 ISWGRNFQYAYNEQELNEILKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 594

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            DA +AD +FS LMG+EVEPR+EFIQ N+  +  DI
Sbjct: 595 EDAIEADQVFSMLMGEEVEPRKEFIQNNAQYAT-DI 629


>gi|302340767|ref|YP_003805973.1| DNA gyrase subunit beta [Spirochaeta smaragdinae DSM 11293]
 gi|301637952|gb|ADK83379.1| DNA gyrase, B subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 636

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 304/633 (48%), Positives = 418/633 (66%), Gaps = 11/633 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SY A +IQ+LKGLDAV+KRP MYIG T G  GLHH++YE++DN+IDE+L G+ D I V
Sbjct: 2   QNSYSAQNIQVLKGLDAVRKRPGMYIGST-GPEGLHHLVYEIVDNSIDEALAGFCDEILV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +       V DNGRGIPTDLHKEEG+SA E++MT+LHAGGKFN+ +YKVSGGLHGVGVS
Sbjct: 61  VIEKGNIIRVEDNGRGIPTDLHKEEGVSALEIVMTKLHAGGKFNKDTYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W  + + R+G+I+   +  G  +  +   G      GT   F P  +IF   +
Sbjct: 121 VVNALSEWCDVFVHRDGSIFYQKYDRGNPEKDVATVGETTRH-GTITRFKPDGEIFETVE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F++D L  RLREL+FLN  ++I + D+R P+ +     ++GG+++FVS+L   KKP+ + 
Sbjct: 180 FSFDVLSRRLRELAFLNKGIRIIIEDERLPQKKTKEFQFEGGVKSFVSFLSESKKPIHKE 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI  +G RD I ++ A+ +N+GY EN+  F NNI  ++GGTHL G ++ALTR    +++K
Sbjct: 240 PIYFEGIRDGIDLECALEYNEGYSENIFSFVNNINTREGGTHLVGFKTALTRTFNDFLKK 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           S  +KK   +  GDD REG T+V+S+K+PDP+F  QTK KL +SEVR VVES V + L+ 
Sbjct: 300 SKFAKKMDETFSGDDVREGLTAVVSVKVPDPQFEGQTKAKLGNSEVRGVVESLVAEHLTY 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P   + I++K+  A+  R AAR+ARDLTRRK  L+ +SLPGKLADC+E+DP KSE
Sbjct: 360 YFEENPKLIEKILEKITMAARARIAARKARDLTRRKSALESSSLPGKLADCAEKDPSKSE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R+ QAILPL GK+LNVE+ R DK+L++ ++  +I  LG G G
Sbjct: 420 VYIVEGDSAGGSAKQGRDRQFQAILPLWGKMLNVEKTRADKVLTNDKLQPIIATLGAGAG 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           ++ FDI+K+RYHK+IIM DADVDG+HIRTLLLTFFFR MP L+  G++YI  PPLY +  
Sbjct: 480 KE-FDISKVRYHKVIIMADADVDGSHIRTLLLTFFFRYMPELVERGYVYIAMPPLYKMQL 538

Query: 547 GKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           GKS+ Y  DE   E  + +    E            G ++ N L         +D   + 
Sbjct: 539 GKSITYAYDERDREKIMKSLFAEETEKVAIQRYKGLGEMNPNQLWET-----TMDPDSRK 593

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                 +  +E   I      E  +     +  
Sbjct: 594 IMQVRLEDAVEADQIFSTLMGEDVEPRRKFIED 626



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 68/83 (81%), Gaps = 1/83 (1%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           ++ ++F+   + +++QRYKGLGEMN +QLWETT++PD+R +++V++ DA +AD +FS LM
Sbjct: 554 IMKSLFAEETEKVAIQRYKGLGEMNPNQLWETTMDPDSRKIMQVRLEDAVEADQIFSTLM 613

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           G++VEPRR+FI++N+L    LDI
Sbjct: 614 GEDVEPRRKFIEDNALMVSNLDI 636


>gi|332664690|ref|YP_004447478.1| DNA gyrase subunit B [Haliscomenobacter hydrossis DSM 1100]
 gi|332333504|gb|AEE50605.1| DNA gyrase, B subunit [Haliscomenobacter hydrossis DSM 1100]
          Length = 655

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 283/595 (47%), Positives = 385/595 (64%), Gaps = 12/595 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++     Y A +IQ L+GL+AV+KRP MYIG TD   GLHH+++EV+DN+IDE L G+  
Sbjct: 14  ESNGADDYGASNIQALEGLEAVRKRPGMYIGSTDS-KGLHHLVWEVVDNSIDEHLAGFCT 72

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V ++ D S TV D+GRGIPT +H +   SA EV+MT LHAGGKF++ +YKVSGGLHG
Sbjct: 73  QIDVIVHEDNSVTVKDDGRGIPTGMHPKLKKSALEVVMTVLHAGGKFDKNTYKVSGGLHG 132

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVS VNALS +L+  + REG I+   F  G     + + G +    GT +TF P   I 
Sbjct: 133 VGVSCVNALSDYLRAEVHREGKIFVQEFAKGKPMGDVQIIGDSP-LHGTTITFRPDGTIL 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F Y+ L  R++ELSFLN  ++++L D+R+ +    +   +GG+  FV YLD  KKP
Sbjct: 192 EALVFEYEILVRRVKELSFLNKGLKLNLTDERTGKT--ESFLSEGGLREFVKYLDGAKKP 249

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L+  PI +   +D++ +++AM +N+ Y EN+  + NNI  ++GGTH+ G R AL R    
Sbjct: 250 LLDEPIYVMTRKDDVEVEVAMIYNESYQENIYSYVNNIHTREGGTHVRGFRMALARVFKQ 309

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y E S   KK K  + G+D REG T+V+S+K+ +P+F  QTK +L +SEV ++V   V D
Sbjct: 310 YGEDSGAFKKLKEEISGEDFREGLTAVISVKVQEPQFKGQTKGELGNSEVTTIVSQCVGD 369

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  ++EE+P EAK IV+KV+ A+  R AAR+AR++ +RK +L    LPGKLADCS +DP
Sbjct: 370 VLKNFVEENPREAKRIVEKVILAATARHAARKAREMVQRKNILTGGGLPGKLADCSSKDP 429

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SE+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG
Sbjct: 430 YESEVFLVEGDSAGGTAKQGRDRHIQAILPLRGKILNVEKAMEHKIYENEEIKNIFTALG 489

Query: 483 TGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             I     G    +I KLRYHK++IMTDADVDG+HI TL+LTFFFR M  LI NG +YI 
Sbjct: 490 VSIEENENGDRVLNIAKLRYHKVVIMTDADVDGSHITTLILTFFFRYMRPLIENGNIYIA 549

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI---ELFCDSKGVISKNDLRN 589
            PPLY I RGK  +Y  +EE  +  +     + E           G ++   L  
Sbjct: 550 APPLYLIKRGKQERYCWNEEERKATIEEFGGNNESNVKVQRYKGLGEMNAEQLWE 604



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 13/275 (4%)

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            + +     +   + + +   K+  +        +     + +     ++  +       
Sbjct: 388 KVILAATARHAARKAREMVQRKNILTGGGLPGKLADCSSKDPYESEVFLVEGDSAGGTAK 447

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                  +            +E+A+   ++  E  + I  +L   +    N      ++ 
Sbjct: 448 QGRD-RHIQAILPLRGKILNVEKAMEHKIYENEEIKNIFTALGVSIEENEN-----GDRV 501

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            + +      +V      V    +      F F      I +  I       L LI  G 
Sbjct: 502 LNIAKLRYHKVVIMTDADVDGSHITTLILTFFFRYMRPLIENGNIY-IAAPPLYLIKRGK 560

Query: 713 -KIKITGPCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR-VKI 767
            +           TI   G      + +QRYKGLGEMNA QLWETT++P+ R +LR V I
Sbjct: 561 QERYCWNEEERKATIEEFGGNNESNVKVQRYKGLGEMNAEQLWETTMDPE-RRMLRSVNI 619

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            DA +AD +FS LMGDEV PRR+FI+EN+  + +D
Sbjct: 620 DDAMEADRVFSMLMGDEVPPRRQFIEENAKYANVD 654


>gi|78707357|gb|ABB46484.1| DNA gyrase subunit B [Acholeplasma laidlawii]
          Length = 631

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 292/598 (48%), Positives = 398/598 (66%), Gaps = 6/598 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            NS Y AD+IQIL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD IT
Sbjct: 1   NNSHYTADNIQILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALGGYADEIT 59

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           + +       V+DNGRGIP D+H +    A E I+T LHAGGKF++ SYKVSGGLHGVG 
Sbjct: 60  IEILKGEVIRVTDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGA 119

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVN LS W  + I ++G IYE  +  GI    L V GS  + +GT ++F     IF+  
Sbjct: 120 SVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFTET 178

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             +NY+TL+ R+++L+FLN  ++++LID R  E +  +  Y+GGI  +V +L++ K  + 
Sbjct: 179 VIYNYETLRTRIQQLAFLNKGLKLNLIDDRFEENKSESFHYEGGITEYVKFLNQSKSKIH 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I I   +D I+++LAM++ D Y  N+  FTNNI   +GG H  G + ALTR I+ Y 
Sbjct: 239 NDIIYIDKEQDGITVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +          S+ G+D REG T+++S+K P+P+F  QTK KL + EVR++     ++ +
Sbjct: 299 DDLKMK--KDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAI 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P +AK IV+KVL A+  R AAR+A+DLTRRK  LD      KLADC  +DP+K
Sbjct: 357 ERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEK 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+++VEGDSAGGSAKQGR  E QAI+PLRGK+LNVE+AR DKMLS++EI  LI A+GTG
Sbjct: 417 SEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  D FDI K RYHKI+IMTDADVDGAHIRTLLLTF FR M  LI  G++Y  +PPLY I
Sbjct: 477 I-SDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKI 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           + G++ QY  +E+ L + L        I+ +     + ++      +D A +    IK
Sbjct: 536 SWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 593



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G  +  DI   R  + V      ++G+ I +    +  R     I+  Y       L  
Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           I  G   +       L+ +        S+QRYKGLGEM+A QLW+TT++P  R+LL++K+
Sbjct: 535 ISWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 594

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            DA +AD +FS LMG+EVEPR++FIQ+N+  +  DI
Sbjct: 595 EDAIEADQVFSMLMGEEVEPRKDFIQKNAQYAT-DI 629


>gi|78707359|gb|ABB46485.1| DNA gyrase subunit B [Acholeplasma laidlawii]
 gi|78707361|gb|ABB46486.1| DNA gyrase subunit B [Acholeplasma laidlawii]
 gi|78707363|gb|ABB46487.1| DNA gyrase subunit B [Acholeplasma laidlawii]
          Length = 631

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 292/598 (48%), Positives = 398/598 (66%), Gaps = 6/598 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            NS Y AD+IQIL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD IT
Sbjct: 1   NNSHYTADNIQILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALGGYADEIT 59

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           + +       V+DNGRGIP D+H +    A E I+T LHAGGKF++ SYKVSGGLHGVG 
Sbjct: 60  IEILKGEVIRVTDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGA 119

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVN LS W  + I ++G IYE  +  GI    L V GS  + +GT ++F     IF+  
Sbjct: 120 SVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFTET 178

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             +NY+TL+ R+++L+FLN  ++++LID R  E +  +  Y+GGI  +V +L++ K  + 
Sbjct: 179 VIYNYETLRTRIQQLAFLNKGLKLNLIDDRFEENKSESFHYEGGITEYVKFLNQSKSKIH 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I I   +D I+++LAM++ D Y  N+  FTNNI   +GG H  G + ALTR I+ Y 
Sbjct: 239 NDIIYIDKEQDGITVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +          S+ G+D REG T+++S+K P+P+F  QTK KL + EVR++     ++ +
Sbjct: 299 DDLKMK--KDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAI 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P +AK IV+KVL A+  R AAR+A+DLTRRK  LD      KLADC  +DP+K
Sbjct: 357 ERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEK 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+++VEGDSAGGSAKQGR  E QAI+PLRGK+LNVE+AR DKMLS++EI  LI A+GTG
Sbjct: 417 SEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  D FDI K RYHKI+IMTDADVDGAHIRTLLLTF FR M  LI  G++Y  +PPLY I
Sbjct: 477 I-SDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKI 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           + G++ QY  +E+ L + L        I+ +     + ++      +D A +    IK
Sbjct: 536 SWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 593



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 7/156 (4%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G  +  DI   R  + V      ++G+ I +    +  R     I+  Y       L  
Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           I  G   +       L+ +        S+QRYKGLGEM+A QLW+TT++P  R+LL++K+
Sbjct: 535 ISWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 594

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            DA +AD +FS LMG+EVEPR+EFIQ N+  +  DI
Sbjct: 595 EDAIEADQVFSMLMGEEVEPRKEFIQNNAQYAT-DI 629


>gi|218283252|ref|ZP_03489313.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989]
 gi|218216007|gb|EEC89545.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989]
          Length = 655

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 274/636 (43%), Positives = 397/636 (62%), Gaps = 13/636 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
                SY AD IQ+L+GL+AV+ RP MYIG T    GLHH+++E++DN IDE+L G+A+ 
Sbjct: 21  TQVEHSYTADDIQVLEGLEAVRLRPGMYIGSTSA-RGLHHLVWEIVDNGIDEALAGFANR 79

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+  D    V DNGRG+P  +H++ GISA E IMT LHAGGKF   +YKVSGGLHGV
Sbjct: 80  IDVTIEPDNIIAVRDNGRGMPVGIHEKTGISAVETIMTVLHAGGKFGGGAYKVSGGLHGV 139

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL++ + ++G IY + F N G    PL V G    +TGT V F   S IF
Sbjct: 140 GASVVNALSEWLEVTVFQDGKIYFIRFENGGHAVEPLKVIGETT-ETGTLVRFKADSQIF 198

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                ++Y+ L  RLR+L+FLN  ++++L DKR+P+       Y+GGI  +V +L+++K 
Sbjct: 199 KDTTVYDYEILNSRLRQLAFLNKDIRLTLTDKRTPDGLSNDYKYEGGIIEYVQFLNKNKS 258

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            +    I ++G +D I  ++A+++NDGY  ++  F NNI   +GG H  G R ALTR I 
Sbjct: 259 TISDKVIYVEGLQDGILAEVALQYNDGYQSSIYSFCNNIHTHEGGYHEDGFRMALTRCIN 318

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y + +   K    ++  DD +EG  +++S+K PDP++  QTK KL +SEVR +V +   
Sbjct: 319 TYAKNNNMIK-KDETLSQDDVKEGLVAIISVKHPDPQYEGQTKTKLGNSEVRKIVSNIAG 377

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI-ASLPGKLADCSER 420
           + ++ +  E+P  AK IV+K   AS  R AA++AR+LTRRK  LD  +SLPGKL DCS +
Sbjct: 378 EQINRFFLENPDIAKAIVEKAEIASKARIAAKKARELTRRKSALDGISSLPGKLTDCSSK 437

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  + E+++VEGDSAGGSAKQGR  + QAILPLRGKILNVE+AR  ++  +QEI ++ITA
Sbjct: 438 DASECEIYIVEGDSAGGSAKQGRDAKTQAILPLRGKILNVEKARTHRIFENQEIRSMITA 497

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GI +D  D++KLRYHKI+IMTDADVDG+HI TL+LTF +R M  +I  G++YI +PP
Sbjct: 498 FGCGIQEDV-DVSKLRYHKIVIMTDADVDGSHICTLMLTFLYRFMKPVIEGGYVYIAQPP 556

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK + Y   E+ ++          +++ +     + ++      +D   ++   
Sbjct: 557 LYKVQKGKKIAYAYKEQEMDQLREEFKDGYKVQRYKGLGEMDAEQLWETTMDPHHRV--- 613

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                       +E   +  +   E  +     +  
Sbjct: 614 ---LKRVTIDDAMEADSVFDMLMGEDVEPRREYIQE 646



 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 48/100 (48%), Positives = 64/100 (64%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
             L  +  G KI        +D +    + G  +QRYKGLGEM+A QLWETT++P  R L
Sbjct: 555 PPLYKVQKGKKIAYAYKEQEMDQLREEFKDGYKVQRYKGLGEMDAEQLWETTMDPHHRVL 614

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            RV I DA +AD +F  LMG++VEPRRE+IQEN++ + LD
Sbjct: 615 KRVTIDDAMEADSVFDMLMGEDVEPRREYIQENAVYANLD 654


>gi|91215255|ref|ZP_01252227.1| DNA gyrase, B subunit [Psychroflexus torquis ATCC 700755]
 gi|91186860|gb|EAS73231.1| DNA gyrase, B subunit [Psychroflexus torquis ATCC 700755]
          Length = 655

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 284/606 (46%), Positives = 407/606 (67%), Gaps = 11/606 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ ++ ++Y ADSIQ L+G++ V+ RPSMYIGD  GE GLHH++YEV+DN+IDE++ GY
Sbjct: 10  MSEEVKKNNYSADSIQALEGMEHVRMRPSMYIGDV-GERGLHHLVYEVVDNSIDEAMGGY 68

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I + +N DGS T  DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 69  CDKIDLVINEDGSVTTLDNGRGIPIDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 128

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L  R+ ++G ++E  +  G    P+  TG   +  GTE+TF P S+
Sbjct: 129 HGVGVSVVNALSVKLHARVFKDGKVWEQEYERGKAIYPVKPTGDTEHK-GTEITFKPDSE 187

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235
           IF    +F Y+TL  RLRELS+LN  ++IS+IDKR      E R+   + + G++ F+ +
Sbjct: 188 IFQESVEFKYETLAKRLRELSYLNKGIRISIIDKRQTNDDGEYRQDEFYSEEGLKEFIRF 247

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +D++++P++   I ++  ++NI +++AM +N+ Y EN+  + NNI   +GGTHLSG R  
Sbjct: 248 IDQNREPIITDVISMESEKNNIPVEVAMVYNNSYSENLHSYVNNINTHEGGTHLSGFRRG 307

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + E+ S 
Sbjct: 308 LTATLKKYADNSGLLDKLKFEITGDDFREGLTAIVSVKVANPQFEGQTKTKLGNRELTSA 367

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V + L  +LEE+P +AK IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+
Sbjct: 368 VSQAVTEMLEIYLEENPNDAKTIVQKVMLAAQARHAAKKAREMVQRKTVMSGGGLPGKLS 427

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP+  E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A   ++  ++EI 
Sbjct: 428 DCSEQDPEACEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAMQHRVFENEEIK 487

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +        +KLRYHK+IIM DADVDG+HI TL+LTFFFR M  LI  
Sbjct: 488 NIYTALGVTIGTEEDSKALNLSKLRYHKVIIMCDADVDGSHIATLILTFFFRYMKELIEA 547

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
             +YI  PPLY I +G   +Y  +E+   + +     S  ++ +     + +       +
Sbjct: 548 SHIYIATPPLYLIKKGSKKRYAWNEKERNEIVNEYKTSVSVQRYKGLGEMNAIQLWDTTM 607

Query: 592 DDALKI 597
           +   +I
Sbjct: 608 NPENRI 613



 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   VF  E  + I  +L   +        E+  K+ + S      +
Sbjct: 463 LPLRGKILNVEKAMQHRVFENEEIKNIYTALGVTIG------TEEDSKALNLSKLRYHKV 516

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F F    + I ++ I       L LI  G K +        
Sbjct: 517 IIMCDADVDGSHIATLILTFFFRYMKELIEASHIY-IATPPLYLIKKGSKKRYAWNEKER 575

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           + I +  +  +S+QRYKGLGEMNA QLW+TT+NP+ R L RV I D ++AD +FS LMGD
Sbjct: 576 NEIVNEYKTSVSVQRYKGLGEMNAIQLWDTTMNPENRILRRVTIVDMAEADRIFSMLMGD 635

Query: 784 EVEPRREFIQENSLPSALD 802
           EV PRREFI++N++ + +D
Sbjct: 636 EVPPRREFIEQNAVYANID 654


>gi|325478798|gb|EGC81908.1| DNA gyrase, B subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 633

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 282/585 (48%), Positives = 400/585 (68%), Gaps = 5/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +Q ++YDA +I++L+GL+ V+ RP MYIG T  E GLHH++YEV+DN++DE+L G  D I
Sbjct: 1   MQENNYDAGNIRVLEGLEPVRLRPGMYIGSTS-ERGLHHLVYEVVDNSVDEALAGRCDYI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D   TV D+G GIP   H     S  E ++T LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 60  KVIVSKDNIITVEDDGSGIPVKEHPTTHKSTLETVLTVLHAGGKFDDKAYQFSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS +L   +KR+G+IY+MSF  G + + L V G    +TGT++TF P ++IF  
Sbjct: 120 VSVVNALSEYLIAEVKRDGHIYKMSFSRGEVTSELEVIGDTK-ETGTKITFKPDAEIFDT 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+  TL++R RE++FLN  V+I    +   E    +  + GGI  FV YL+R+K P+M
Sbjct: 179 TIFDRKTLENRFREMAFLNKGVEIIF--EDQREDFSESFKFDGGISEFVKYLNRNKTPIM 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                  G +++I ++++ ++ DGY EN+L + NNI   +GGTHLSG RSALTR +  Y 
Sbjct: 237 DVIPHFDGMQEDIEVEVSFQYTDGYSENILTYANNIHTPEGGTHLSGFRSALTRTVNDYA 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K+++ ++ G+D REG T+++S+K+ +P+F  QTK KL +SEVR  V++FV+  L
Sbjct: 297 RNFKFIKENEDNLQGEDIREGITAIISVKISEPQFEGQTKAKLGNSEVRGAVDTFVSQRL 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
            A+LEE+P  AK I++K L +   R+AAR+ARDLTR++ +LD  +LPGKLADC   D  +
Sbjct: 357 QAFLEENPKPAKAIIEKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQSTDLAE 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+F+VEG+SAGGSAK GR    QAILPLRGKI+NVE+A  D++L+S+EI  +ITA GTG
Sbjct: 417 NEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNSEEIKAMITAFGTG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDI+KLRY KIIIMTDADVDGAHIRTLLLTFF+R M  LI  G +Y+ +PPLY I
Sbjct: 477 IGKE-FDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIDEGHVYVAQPPLYKI 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + G++ +YV  +   +  L    +           G ++ + L +
Sbjct: 536 SHGRNERYVYTDAERDKVLKELDVENYKINRYKGLGEMNADQLWD 580



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +  + ++   +        K +  S      ++      V    +    
Sbjct: 449 IMNVEKANLDRILNSEEIKAMITAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLL 508

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I    +      +  +    ++  +         +  +  +   + RYK
Sbjct: 509 LTFFYRYMKPLIDEGHVYVAQPPLYKISHGRNERYVYTDAERDKVLKELDVENYKINRYK 568

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLP 798
           GLGEMNA QLW+TT++PD R LLRV   D      DD FS LMG++VEPRR FIQEN+  
Sbjct: 569 GLGEMNADQLWDTTMDPDHRVLLRVN-EDFESTSTDDTFSLLMGEKVEPRRNFIQENAKY 627

Query: 799 S-ALDI 803
              +D+
Sbjct: 628 VSNIDV 633


>gi|318042881|ref|ZP_07974837.1| DNA gyrase subunit B [Synechococcus sp. CB0101]
          Length = 653

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 289/651 (44%), Positives = 400/651 (61%), Gaps = 17/651 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MSEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V LN DGSC V+DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDQILVVLNEDGSCAVTDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPS 178
           LHGVGVSVVNALS W+++ + R+G  +   F  G     L    +A  + TGT V F P 
Sbjct: 120 LHGVGVSVVNALSEWVEVTVHRQGQEHLQRFERGAPIGSLASKPAADPSRTGTSVCFKPD 179

Query: 179 SDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEA 231
            +IF+   +F+Y TL  RLREL++LN  V+I   D+R           E    Y+GGI+ 
Sbjct: 180 IEIFTGGIEFDYHTLSARLRELAYLNGGVRIVFRDERPAARNAEGAAHEEIYHYEGGIKE 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +V+Y++  K  L    I +   +D + ++ A++W  D Y +N+  F NNI   DGGTH+ 
Sbjct: 240 YVAYMNAEKDALHPDIIYVNSEKDGVQVEAALQWCVDAYSDNIFGFANNIRTVDGGTHIE 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GL++ LTR + ++ +K    K    ++ G++ REG T+VLS+K+P+P F  QTK KL ++
Sbjct: 300 GLKTVLTRTLNAFAKKRGKRKDADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 359

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR +V+S V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ ++L
Sbjct: 360 EVRGIVDSLVGEALSEYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 419

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  
Sbjct: 420 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 479

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           + EI  LITALG GI  + FD   LRYH+I+IMTDADVDGAHIRTLLLTFF+R   +L+ 
Sbjct: 480 NTEIQALITALGLGIKGEEFDEKNLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKALVE 539

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            G++YI  PPLY + RGK+  Y  +E  L+  +                 G +    L  
Sbjct: 540 GGYIYIACPPLYKVERGKNHSYCYNEGDLKRVVEGFGEKANYTIQRFKGLGEMMPQQLWE 599

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                  +D   +       +   E   I  +   +        + +  A 
Sbjct: 600 T-----TMDPTTRTMKRVEIEDAAEADRIFTILMGDKVAPRREFIETHSAE 645



 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 129/330 (39%), Gaps = 35/330 (10%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561
            DA++ G +IR  L      ++P     G     +    + GI      + + +      
Sbjct: 322 ADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEALSEYLEFNP 381

Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616
            +I+  L + I+ F  ++      +L  R  + ++  +   + D         + +I + 
Sbjct: 382 SVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIYIVEG 441

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINN 659
             +G    +       ++       LN       K +                     + 
Sbjct: 442 DSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDE 501

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNGDKI 714
            ++   RI   +     ++G+ I +    +   +   + E          L  +  G   
Sbjct: 502 KNLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQKALVEGGYIYIACPPLYKVERGKNH 559

Query: 715 K-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
                   L   +   G K   ++QR+KGLGEM   QLWETT++P TR++ RV+I DA++
Sbjct: 560 SYCYNEGDLKRVVEGFGEKANYTIQRFKGLGEMMPQQLWETTMDPTTRTMKRVEIEDAAE 619

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           AD +F+ LMGD+V PRREFI+ +   + LD
Sbjct: 620 ADRIFTILMGDKVAPRREFIETH--SAELD 647


>gi|148238483|ref|YP_001223870.1| DNA gyrase subunit B [Synechococcus sp. WH 7803]
 gi|147847022|emb|CAK22573.1| DNA gyrase subunit B [Synechococcus sp. WH 7803]
          Length = 655

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 291/661 (44%), Positives = 403/661 (60%), Gaps = 20/661 (3%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MSEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I V L  DGS +V+DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCSEIQVVLGEDGSASVTDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L            TGT V F 
Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAPIGSLASEPQPAEEDGRTGTSVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229
           P  +IFSV   F+Y TL  RLREL++LN  V+I   D+R         P E T FY+GGI
Sbjct: 180 PDIEIFSVGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDAEGNPHEETYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y++  K  L    I +   +D +S++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVAYMNAEKDALHPEIIYVNAEKDGVSVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++  K    K+   ++ G++ REG T+VLS+K+P+P F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S V + L  +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDSLVGEALGQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD+  LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+  Y  +E  L+  L                 G +    L
Sbjct: 540 VDGGYIYIACPPLYKVERGKNHTYCYNEPELQKTLEGFGEKANYNIQRFKGLGEMMPQQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                    +D   +       +  +E   I  +   +             +  L+  A 
Sbjct: 600 WET-----TMDPTTRTMKRVEIEDALEADRIFTILMGDKV-APRREFIETHSAELDMTAL 653

Query: 648 K 648
            
Sbjct: 654 D 654



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 10/175 (5%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSK 688
           +K+       A  +         + D+   R  R        V    +      F +  +
Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 536

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747
            + +    I      +  +    +         L  T+   G K   ++QR+KGLGEM  
Sbjct: 537 KELVDGGYIYIACPPLYKVERGKNHTYCYNEPELQKTLEGFGEKANYNIQRFKGLGEMMP 596

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            QLWETT++P TR++ RV+I DA +AD +F+ LMGD+V PRREFI+ +   + LD
Sbjct: 597 QQLWETTMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETH--SAELD 649


>gi|159904302|ref|YP_001551646.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9211]
 gi|159889478|gb|ABX09692.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9211]
          Length = 658

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/619 (46%), Positives = 400/619 (64%), Gaps = 18/619 (2%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+    N   + Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+
Sbjct: 1   MSEDSKVNKVQADYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+ D I V L  DGS +++DNGRGIPTD+H   G SA E ++T LHAGGKF    YKV
Sbjct: 60  LAGHCDEIVVVLCNDGSASITDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND---TGTEV 173
           SGGLHGVGVSVVNALS W+++ ++R+   +   F  G+    L       +    TGT V
Sbjct: 120 SGGLHGVGVSVVNALSEWVEVTVRRQNQTHVQRFERGVPVGGLTSKDQPSSQKGVTGTTV 179

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYK 226
            F P + IF+   +F Y TL  RLREL++LN  V+I   D+R        +P E   FY+
Sbjct: 180 CFKPDNQIFTSGIEFEYATLSSRLRELAYLNGGVRIVFRDERKTSLTTEGDPYEEIYFYQ 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDG 285
           GGI+ +VSY++  K  L    I +   +D + ++ A++W  D Y +++L F NNI   DG
Sbjct: 240 GGIKEYVSYINSEKDALHPEIIYVNSEKDGVQVEAALQWCVDAYSDSILGFANNIRTVDG 299

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH+ GL++ LTR + S+  K    K    ++ G++ REG T VLS+K+P+P F  QTK 
Sbjct: 300 GTHIEGLKTVLTRTLNSFARKRGKRKDGDNNLAGENIREGLTVVLSVKVPEPEFEGQTKT 359

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++EVR +V+S V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL
Sbjct: 360 KLGNTEVRGIVDSLVGESLSQYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVL 419

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           + ++LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILN+E+   
Sbjct: 420 ESSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDD 479

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            K+  + EI +LITALG GI  + F    LRYH+++IMTDADVDGAHIRTLLLTFF+R  
Sbjct: 480 SKIYKNTEIQSLITALGLGIKGEEFSSKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 539

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVIS 583
             L+  G++YI  PPLY + RGK  +Y  +E  L+  +    +  +  I+ F     ++ 
Sbjct: 540 KELVEGGYIYIACPPLYKVERGKKHKYCYNESDLKKTIDGFGEKANYTIQRFKGLGEMMP 599

Query: 584 KNDLRNFIDDALKIDKLIK 602
           K      +D + ++ K ++
Sbjct: 600 KQLWETTMDPSTRMMKKVE 618



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLIC 709
              ++ ++   R+   +     ++G+ I +    +   +   + E          L  + 
Sbjct: 502 EEFSSKNLRYHRVV--IMTDADVDGAHIRTLLLTFFYRYQKELVEGGYIYIACPPLYKVE 559

Query: 710 NGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
            G K K       L  TI   G K   ++QR+KGLGEM   QLWETT++P TR + +V+I
Sbjct: 560 RGKKHKYCYNESDLKKTIDGFGEKANYTIQRFKGLGEMMPKQLWETTMDPSTRMMKKVEI 619

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            DA +AD +F+ LMGD+V PRR+FI+ +     LD
Sbjct: 620 EDALEADRIFTILMGDKVAPRRQFIETH--SVELD 652


>gi|184154481|ref|YP_001842821.1| DNA gyrase subunit B [Lactobacillus fermentum IFO 3956]
 gi|227514123|ref|ZP_03944172.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|260662542|ref|ZP_05863437.1| DNA gyrase, B subunit [Lactobacillus fermentum 28-3-CHN]
 gi|183225825|dbj|BAG26341.1| DNA gyrase subunit B [Lactobacillus fermentum IFO 3956]
 gi|227087494|gb|EEI22806.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|260553233|gb|EEX26176.1| DNA gyrase, B subunit [Lactobacillus fermentum 28-3-CHN]
 gi|299782689|gb|ADJ40687.1| DNA gyrase subunit B [Lactobacillus fermentum CECT 5716]
          Length = 649

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/629 (45%), Positives = 407/629 (64%), Gaps = 14/629 (2%)

Query: 1   MSDNIQN-------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           M+   +        S YDA  IQ+LKGL+AV+KRP MYIG T    GLHH+++E++DN I
Sbjct: 1   MTQQEEQARKAELASEYDASQIQVLKGLEAVRKRPGMYIGST-TVQGLHHLVWEIVDNGI 59

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE+L G+ D I V +  D S  V+DNGRGIP D+ KE G  A E + T LHAGGKF    
Sbjct: 60  DEALAGFCDEINVIVEPDNSIIVTDNGRGIPVDIQKETGKPALETVFTVLHAGGKFGNGG 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGT 171
           YKVSGGLHGVG SVVNALS+ L +++ R+G  Y M F  G ++  + V       +  GT
Sbjct: 120 YKVSGGLHGVGASVVNALSTELDVKVARQGKEYYMDFARGHVNTAMKVIKDDLPQSAHGT 179

Query: 172 EVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F+P  +IF     +N +TL  RLREL+FLN  ++I++ D+R  + ++ +  Y+GGI 
Sbjct: 180 TVHFVPDPEIFRETTVYNINTLIDRLRELAFLNKGLKITVEDRREGKEKQESFHYEGGIR 239

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            +V +L+   + L   PI ++G    I++++++++ D Y  N+L FTNNI   +GGTH +
Sbjct: 240 HYVEFLNEGHELLFDPPIYVEGEYKGITVEVSLQYTDDYRSNLLTFTNNIHTYEGGTHET 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G ++ALTR I  Y  KS   K +  ++ G+D REG T+V+SIK P+P+F  QTK KL +S
Sbjct: 300 GFKTALTRVINDYGRKSGQIKGN-VTLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLSNS 358

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           + R+  +    + ++ ++ E+P  A+ IV+K + AS  RDAA+RAR++TR+K  L+I++L
Sbjct: 359 DARTATDHIFAETMTRFMMENPDVARKIVEKGMLASKARDAAKRAREVTRKKSGLEISNL 418

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLAD + +DP  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  +++L+
Sbjct: 419 PGKLADNTSKDPAISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASLNRVLA 478

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++EI +L TALGTG G D FD+NK  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I 
Sbjct: 479 NEEIRSLFTALGTGFG-DDFDVNKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPMIE 537

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            G++YI +PPLY + +GK ++Y++++E LE  + +   S + +       G +    L  
Sbjct: 538 KGYVYIAQPPLYQVRQGKFVKYIENDEELERVVNSLQPSPKPVIQRYKGLGEMDAEQLWE 597

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
              D      L            I Q ++
Sbjct: 598 TTMDPANRHLLRVKLDDAKAADEIFQMLM 626



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P  R LLRVK+ DA  AD++F  LMG +V PRREFI+EN
Sbjct: 581 IQRYKGLGEMDAEQLWETTMDPANRHLLRVKLDDAKAADEIFQMLMGTKVGPRREFIEEN 640

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 641 ATFVENLD 648


>gi|317968499|ref|ZP_07969889.1| DNA gyrase subunit B [Synechococcus sp. CB0205]
          Length = 653

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 290/614 (47%), Positives = 407/614 (66%), Gaps = 13/614 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MSEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I V +  DGSC+VSDNGRGIPTD+H + G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCNEIRVAIEEDGSCSVSDNGRGIPTDVHPKTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPS 178
           LHGVGVSVVNALS W+++ + R+G  +   F  G     L +  +A  + TGT V F P 
Sbjct: 120 LHGVGVSVVNALSEWVEVVVYRQGKEHRQRFERGAPIGTLAIEPAADASRTGTTVRFKPD 179

Query: 179 SDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEA 231
            +IF+V  +F+Y+TL  RLREL++LN  V+I   D+R        E  E    Y+GGI+ 
Sbjct: 180 LEIFTVGIEFDYNTLSARLRELAYLNGGVKIVFRDERPAARNAEGEAHEEIYHYEGGIKE 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +V+Y++  K  L    I +   +D + I+ A++W  D Y +N+  F NNI   DGGTH+ 
Sbjct: 240 YVAYMNAEKDALHPDIIYVNSEKDGVQIEAALQWCVDAYSDNIFGFANNIRTVDGGTHIE 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GL++ LTR + ++ +K    K+   ++ G++ REG T+VLS+K+PDP F  QTK KL ++
Sbjct: 300 GLKTVLTRTLNTFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNT 359

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR +V+S V + L  +LE +P    +I++K + A    +AARRAR+L RRK VL+ ++L
Sbjct: 360 EVRGIVDSLVGEALGEYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 419

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  
Sbjct: 420 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 479

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           + EI  LITALG GI  + FD   LRYH+I+IMTDADVDGAHIRTLLLTFF+R   SL+ 
Sbjct: 480 NTEIQALITALGLGIKGEEFDDKNLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKSLVE 539

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKNDLR 588
            G++YI  PPLY + RGK+  Y  +E  L+  +    +  +  I+ F     ++ K    
Sbjct: 540 GGYIYIACPPLYKVERGKNHTYCYNEADLKTTIEGFGEKANFTIQRFKGLGEMMPKQLWE 599

Query: 589 NFIDDALKIDKLIK 602
             +D + ++ K ++
Sbjct: 600 TTMDPSTRMMKRVE 613



 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 131/330 (39%), Gaps = 35/330 (10%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561
           +D+++ G +IR  L      ++P     G     +    + GI      + + +      
Sbjct: 322 SDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEALGEYLEFNP 381

Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616
            +I+  L + I+ F  ++      +L  R  + ++  +   + D         + +I + 
Sbjct: 382 SVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIYIVEG 441

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINN 659
             +G    +       ++       LN       K +                     ++
Sbjct: 442 DSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDD 501

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNGDKI 714
            ++   RI   +     ++G+ I +    +   +   + E          L  +  G   
Sbjct: 502 KNLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQKSLVEGGYIYIACPPLYKVERGKNH 559

Query: 715 K-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
                   L  TI   G K   ++QR+KGLGEM   QLWETT++P TR + RV+I DA++
Sbjct: 560 TYCYNEADLKTTIEGFGEKANFTIQRFKGLGEMMPKQLWETTMDPSTRMMKRVEIADAAE 619

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           AD +F+ LMGD+V PRREFI+ +   + LD
Sbjct: 620 ADRIFTILMGDKVAPRREFIETH--SAELD 647


>gi|254430578|ref|ZP_05044281.1| DNA gyrase, B subunit [Cyanobium sp. PCC 7001]
 gi|197625031|gb|EDY37590.1| DNA gyrase, B subunit [Cyanobium sp. PCC 7001]
          Length = 652

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 291/650 (44%), Positives = 402/650 (61%), Gaps = 16/650 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNA+DE+L G
Sbjct: 1   MSEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNAVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V LN DGSC VSDNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDQILVVLNEDGSCAVSDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS W+++ + R   ++   F  G     L         TGT V F P S
Sbjct: 120 LHGVGVSVVNALSEWVQVTVYRHDQVHTQRFERGAAIGSLASAPGEKGRTGTTVCFKPDS 179

Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAF 232
           +IF+    F+Y TL  RLREL++LN  V+I   D+R        EP E   FY+GGI+ +
Sbjct: 180 EIFTGGISFDYATLSSRLRELAYLNGGVRIVFRDERQSARNAAGEPHEDIYFYEGGIKEY 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSG 291
           V+Y++  K PL    I +   ++ + ++ A++W  D Y +++L F NNI   DGGTH+ G
Sbjct: 240 VAYMNAEKDPLHPDIIYVNAEKEGVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           L++ LTR + ++ +K    K    ++ G++ REG T+VLS+K+P+P F  QTK KL ++E
Sbjct: 300 LKTVLTRTLNAFAKKRGKRKDADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTE 359

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR +V++ V + L  +LE +P    +I++K + A    +AARRAR+L RRK VL+ ++LP
Sbjct: 360 VRGIVDTLVGEALGEFLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLP 419

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  +
Sbjct: 420 GKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKN 479

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            EI  LITALG GI  + FD   LRYH+I+IMTDADVDGAHIRTL+LTFFFR   +L+  
Sbjct: 480 TEIQALITALGLGIKGEDFDEKNLRYHRIVIMTDADVDGAHIRTLILTFFFRYQKALVEG 539

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590
           G++YI  PPLY + RGK+  Y  +E  L+  + +               G +    L   
Sbjct: 540 GYIYIACPPLYKVERGKNHTYCYNEGDLKKTIESFGEKANYTIQRFKGLGEMMPQQLWET 599

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                 +D   +       +  +E   I  +   +        + +  A 
Sbjct: 600 -----TMDPATRMMKRVEIEDALEADRIFTILMGDKVAPRREFIETHSAE 644



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 125/328 (38%), Gaps = 31/328 (9%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561
            DA++ G +IR  L      ++P     G     +    + GI      + + +      
Sbjct: 321 ADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDTLVGEALGEFLEFNP 380

Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616
            +I+  L + I+ F  ++      +L  R  + ++  +   + D         + +I + 
Sbjct: 381 SVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEG 440

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINN 659
             +G    +       ++       LN       K +                     + 
Sbjct: 441 DSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDE 500

Query: 660 SDILVKRIA----RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
            ++   RI       V    +      F F  +   +    I      +  +    +   
Sbjct: 501 KNLRYHRIVIMTDADVDGAHIRTLILTFFFRYQKALVEGGYIYIACPPLYKVERGKNHTY 560

Query: 716 ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                 L  TI S G K   ++QR+KGLGEM   QLWETT++P TR + RV+I DA +AD
Sbjct: 561 CYNEGDLKKTIESFGEKANYTIQRFKGLGEMMPQQLWETTMDPATRMMKRVEIEDALEAD 620

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALD 802
            +F+ LMGD+V PRREFI+ +   + LD
Sbjct: 621 RIFTILMGDKVAPRREFIETH--SAELD 646


>gi|169235747|ref|YP_001688947.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Halobacterium
           salinarum R1]
 gi|167726813|emb|CAP13599.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Halobacterium
           salinarum R1]
          Length = 637

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 296/591 (50%), Positives = 391/591 (66%), Gaps = 8/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD    S Y A  IQ+L+GL+AV+KRP+MYIG TD   GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MSDQ---SEYSAGQIQVLEGLEAVQKRPAMYIGSTDA-RGLHHLVYEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VTL+ DGS +V+D+GRGIP   H+E    A EVI+T LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDRIDVTLHDDGSVSVTDDGRGIPVATHEEYDRPAVEVILTVLHAGGKFDAKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L + + R+G  Y   F  G     L   G + +D+GT + F P S+
Sbjct: 117 HGVGVSVVNALSERLAVEVSRDGARYREQFERGEPVTDLQHVGDS-DDSGTLIRFRPDSE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +++ TL++RLREL+FLNS V+I+L D+R  EP + T  Y+GGI  FV YL+  +
Sbjct: 176 IFETTAYDFSTLENRLRELAFLNSGVEITLTDERGDEPTQSTFEYEGGIREFVEYLNETR 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L    I  QG  D IS+++AM+ ++    +   F NNI  ++GGTHL+G ++ALTR +
Sbjct: 236 NALHDDVIYFQGEDDGISVEIAMQASEDVQSSTHAFANNINTREGGTHLTGFKTALTRTV 295

Query: 301 TSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
             Y   +    +    ++ GDD REG T+V+S+K PDP+F  QTK KL +SEVR +VE  
Sbjct: 296 NDYANDNNLLSELDGENLTGDDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVERA 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VNDGL  + EE+P  AK +V+  ++A+  R AA++A +LTRRK  L   SLPGKLADC  
Sbjct: 356 VNDGLGTYFEENPATAKAVVRTAVEAAKARKAAKKAEELTRRKSALGSTSLPGKLADCQS 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P+ +ELF+VEGDSAGGSAKQGR+   QAILPL GKILNVE+ R D++L   E+  +IT
Sbjct: 416 KAPEDAELFVVEGDSAGGSAKQGRNPGFQAILPLGGKILNVEKHRLDRILEHDELRHIIT 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG D FDI++LRY  II+MTDADVDGAHIRTLLLTFF+R M  L+  G++Y  +P
Sbjct: 476 ALGTGIG-DEFDIDELRYENIIMMTDADVDGAHIRTLLLTFFYRHMKPLLEAGYVYAAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRN 589
           PLY I           E   E  +  Q   +          G ++   L +
Sbjct: 535 PLYRIRYRGKTYDAMTEADRERIVEEQCNGNPTQVQRFKGLGEMNPQQLWD 585



 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    +L + +  +       +       + ++      V    +    
Sbjct: 453 ILNVEKHRLDRILEHDELRHIITALGTGIGDEFDIDELRYENIIMMTDADVDGAHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738
             F +      + +  +      +  +   G            + I      G    +QR
Sbjct: 513 LTFFYRHMKPLLEAGYVYAAQPPLYRIRYRGKTYDAMTEADR-ERIVEEQCNGNPTQVQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +KGLGEMN  QLW+TT++P+ R L R+ + DA+ AD +FS LMGD VEPR++FIQE +  
Sbjct: 572 FKGLGEMNPQQLWDTTMDPENRILKRITVEDAAAADKMFSVLMGDAVEPRKQFIQERAGD 631

Query: 799 SA-LDI 803
           +  +DI
Sbjct: 632 AEWVDI 637


>gi|315187334|gb|EFU21090.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6578]
          Length = 635

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 288/585 (49%), Positives = 395/585 (67%), Gaps = 7/585 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A+ IQ+L+GL+ V+KRP MYIG T GE GLHH++YEV+DN+IDE+L G    I V +
Sbjct: 2   SYTAEQIQVLRGLEPVRKRPGMYIGST-GEEGLHHLVYEVVDNSIDEALAGVCSRIEVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
                 TV+D+GRGIP DLH EE +SA E++MTRLHAGGKF++K+YKVSGGLHGVGVSVV
Sbjct: 61  EPGNVVTVTDDGRGIPVDLHPEEKVSALELVMTRLHAGGKFDKKTYKVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS W ++ + R+G I+   +  G+   P+ V G       T   F P ++IF   +F+
Sbjct: 121 NALSEWCEVEVHRDGKIHVQRYQRGVPLGPVEVRGRTDRTG-TTTRFKPDAEIFETTEFS 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L  RLREL+FLN  ++I + D R+   +E    Y+GG+  FV+YL++++  L + PI
Sbjct: 180 FDILSQRLRELAFLNKGIEIVIRDLRTKRVKEHVFKYEGGLREFVAYLNKNRTSLQKEPI 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +G+RD++ I+ A+ +ND Y E    F NNI  K+GGTH+ G RSALTR +    ++S 
Sbjct: 240 YFEGARDHVEIECAIEYNDSYTETFFSFVNNINTKEGGTHVVGFRSALTRCLNDLFKQSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK   ++ GDD REG T+VLSIK+P+P+F  QTK KL +S+V+ +VESFV + L A  
Sbjct: 300 FAKKLDDTLSGDDVREGLTAVLSIKVPEPQFEGQTKTKLGNSDVKGIVESFVYEQLQAHF 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             HP + + I++KV+ A+  R AAR+AR+L RRK VL+   LPGKLADC E+DP K E+F
Sbjct: 360 ARHPKDGEAILEKVVQAARARIAARKARELARRKSVLESMDLPGKLADCIEKDPAKCEIF 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQGR RE QAILPL GK+LNVE+ R +K+L++ ++  +I +LGTGIG  
Sbjct: 420 IVEGDSAGGSAKQGRDREFQAILPLWGKMLNVEKTRMEKVLTNDKLYPIIASLGTGIG-T 478

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI++LRYHK+IIM DADVDG+HIRTLLLTFF+R M  L+  G +YI  PPLY +    
Sbjct: 479 EFDISRLRYHKVIIMADADVDGSHIRTLLLTFFYRYMKELVERGHVYIAMPPLYKVWVKN 538

Query: 549 SLQYVKDEESLE----DYLINQSLSEEIELFCDSKGVISKNDLRN 589
            ++Y   +E  +     +       E         G ++   L  
Sbjct: 539 EVEYAYTDEERDRILERFAKKYKKDEINVQRYKGLGEMNPEQLWE 583



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 5/188 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    KL   +  +       +  S      ++      V    +    
Sbjct: 448 MLNVEKTRMEKVLTNDKLYPIIASLGTGIGTEFDISRLRYHKVIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK----GISM 736
             F +    + +    +      +  +    +             +    +K     I++
Sbjct: 508 LTFFYRYMKELVERGHVYIAMPPLYKVWVKNEVEYAYTDEERDRILERFAKKYKKDEINV 567

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT+NP TR+++++++ DA +A+++F+ LMGD+V PRR+FI+EN+
Sbjct: 568 QRYKGLGEMNPEQLWETTMNPATRNIIQIRVEDAVEAEEVFTTLMGDQVAPRRKFIEENA 627

Query: 797 LPS-ALDI 803
           L    LD+
Sbjct: 628 LFVTNLDV 635


>gi|325102923|ref|YP_004272577.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145]
 gi|324971771|gb|ADY50755.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145]
          Length = 652

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 288/632 (45%), Positives = 406/632 (64%), Gaps = 17/632 (2%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+ I +NS+Y AD+IQ+L+GL+AV+KRP+MYIGDT G  GLHH++YEV+DN+IDE+L G
Sbjct: 1   MSEAIEKNSNYSADNIQVLEGLEAVRKRPAMYIGDT-GVKGLHHLVYEVVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT++ + S TV DNGRGIPT ++K+E  SA E++MT LHAGGKF++ +YKVSGG
Sbjct: 60  YCTDILVTIHKNNSITVEDNGRGIPTGINKKENKSALEIVMTVLHAGGKFDKDTYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +   + REG I+   +  G     + V G + + TGT  TF P  
Sbjct: 120 LHGVGVSCVNALSTHVITVVHREGKIFTQEYERGKPLFDVKVIGES-DRTGTIQTFQPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVS 234
           +IF+    + +DTL  RLREL+FLN  +++ L D+R  +          + +GG+  FV+
Sbjct: 179 EIFTQTTEYRFDTLAGRLRELAFLNKGIRLVLTDEREVKEDGSFLSEEFYSEGGLREFVT 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD  + PL+   I I+G ++ I ++LA  +N+ Y+EN+  + NNI   +GG+H++G R 
Sbjct: 239 FLDSTRTPLIPDAIYIEGEKNGIPVELAFTYNNSYNENIHSYVNNINTIEGGSHVAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR + SY EKS   K  K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV  
Sbjct: 299 GLTRTLKSYAEKSGLLKNLKVEITGDDFREGLTAVISVKVQEPQFEGQTKTKLGNTEVTG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V + L  +LEE+P EAK+IV KV+ A+  R AAR+AR++ +RK V+  + LPGKL
Sbjct: 359 AVDIAVGEALGNFLEENPKEAKLIVNKVILAATARAAARKAREMVQRKNVMGGSGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+ +DP   ELFLVEGDSAGG+AKQGR+R+ QAILPL+GKILNVE+A   K+  + EI
Sbjct: 419 ADCANKDPHVCELFLVEGDSAGGTAKQGRNRDFQAILPLKGKILNVEKAMEHKIYENDEI 478

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TALG  IG    +      KLRYHK+IIMTDADVDG+HI TL+LTFFFR M  LI 
Sbjct: 479 KNIFTALGVSIGTAEDEKELNLEKLRYHKVIIMTDADVDGSHITTLILTFFFRYMKQLIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G +YI  PPLY + +GK  +Y  ++   +  +       +     +    I +      
Sbjct: 539 AGNIYIAAPPLYQVKKGKEFEYCWNDVQRDAAVQRLKGGGK-----EDSVHIQRYKGLGE 593

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++     +  +        +  IE A  +   
Sbjct: 594 MNAEQLWETTLNPETRTLKRATIESAAEADRI 625



 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 11/192 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E   E  +    ++ N    +       + EK  +        ++      V    
Sbjct: 461 ILNVEKAMEHKIYENDEIKNIFTALGVSIGTAEDEKELNLEKLRYHKVIIMTDADVDGSH 520

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI--TGP--CSLLDTIFSIGR 731
           +      F F    + I +  I       L  +  G + +         + +  +   G+
Sbjct: 521 ITTLILTFFFRYMKQLIEAGNIY-IAAPPLYQVKKGKEFEYCWNDVQRDAAVQRLKGGGK 579

Query: 732 -KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
              + +QRYKGLGEMNA QLWETTLNP+TR+L R  I  A++AD +FS LMGDEV PRRE
Sbjct: 580 EDSVHIQRYKGLGEMNAEQLWETTLNPETRTLKRATIESAAEADRIFSMLMGDEVAPRRE 639

Query: 791 FIQENSLPSALD 802
           FI++N+  + +D
Sbjct: 640 FIEKNARYAKID 651


>gi|253582585|ref|ZP_04859806.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
 gi|251835455|gb|EES63995.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
          Length = 635

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 269/585 (45%), Positives = 383/585 (65%), Gaps = 5/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++Y A++I +L+GL+AV+KRP MYIG T  E GLHH+++E++DNA+DE+L GY D I V
Sbjct: 2   SNNYQAENITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNAVDEALAGYCDKIVV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +  D    V DNGRGIP  +H +   SA E+++T LHAGGKF   +YKVSGGLHGVGVS
Sbjct: 61  NILPDNIIEVIDNGRGIPVGIHPKYNKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W  + +K +G I+   +  G+ +  +   G    + GT V F    +IF    
Sbjct: 121 VVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTT-EHGTTVRFKADHEIFETLI 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++Y+TL++RL+EL++LN  ++I L D R    ++    ++GGI  F+  +    + L+  
Sbjct: 180 YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKKEEFKFEGGIVDFLKEITEETEKLIPE 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI + G  DN+++D+A  +     E +  F NNI   +GGTH+SG R+ALTR I    + 
Sbjct: 240 PIYMTGEVDNVAVDIAFLYTVNQSEIIYSFVNNINTHEGGTHVSGFRTALTRVINDVGKA 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K+    + G+D REG T+++S+K+P P+F  QTK KL +SEV  +V + V   L  
Sbjct: 300 QGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVSTLVGTNLKI 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
            LE++P + KII++K+L++   R+AA++AR+L  RK VL++ SLPGKLADCS ++P + E
Sbjct: 360 VLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCSSKNPDECE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R +QAILPLRGKILNVE+A   K L + E+  +ITA GT IG
Sbjct: 420 IYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNEVRAMITAFGTSIG 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            DSF+I KLRY KII+MTDADVDGAHIRTLLLTF +R M  LI+NG +YI +PPLY IT 
Sbjct: 480 -DSFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRFMVDLIYNGNVYIAQPPLYKITT 538

Query: 547 GKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           GK ++Y   +  L++        ++          G ++   L  
Sbjct: 539 GKQIRYAYSDRELKEITDVFEGDDKKYTLQRYKGLGEMNPEQLWE 583



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 59/73 (80%), Gaps = 1/73 (1%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K  ++QRYKGLGEMN  QLWETT+NPDTR+LL+V I DA  AD LF +LMGD+V+PRREF
Sbjct: 563 KKYTLQRYKGLGEMNPEQLWETTMNPDTRTLLQVTIDDARAADMLFDKLMGDKVDPRREF 622

Query: 792 IQENSLPS-ALDI 803
           I+EN++    LDI
Sbjct: 623 IEENAVYVKNLDI 635


>gi|116074377|ref|ZP_01471639.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916]
 gi|116069682|gb|EAU75434.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916]
          Length = 655

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/653 (43%), Positives = 402/653 (61%), Gaps = 19/653 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MSEASKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I V L  DGS +V+DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCSEIQVVLAEDGSASVTDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L            TGT V F 
Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGKVHRQRFERGAAIGSLRSEEQPAEENGLTGTSVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDK------RSPEPREITMFYKGGI 229
           P   IF+    F+Y TL  RLREL++LN  V+I   D+         EP E   FY+GGI
Sbjct: 180 PDIQIFTGGIVFDYATLAARLRELAYLNGGVRIVFRDEREAARTPEGEPHEEIYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y+++ K  L    I +   +D + ++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVAYMNKEKDALHPDIIYVNSEKDGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++ +K    K+   ++ G++ REG T+VLS+K+P+P F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V++ V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDNLVGEALSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD+  LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+  Y  +E+ L+  L                 G +    L
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEQDLQKTLAAFPEKANYNIQRFKGLGEMMPAQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                    +D   +       +  +E   I  +   +        + +  A 
Sbjct: 600 WET-----TMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETHSAE 647



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFS 694
           +K+       A  +         + D+   R  R V      ++G+ I +    +   + 
Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 536

Query: 695 NRIEENYL-----TILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747
             + E          L  +  G           L  T+ +   K   ++QR+KGLGEM  
Sbjct: 537 KELVEGGYIYIACPPLYKVERGKNHTYCYNEQDLQKTLAAFPEKANYNIQRFKGLGEMMP 596

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803
           +QLWETT++P TR++ RV+I DA +AD +F+ LMGD+V PRREFI+ +S     + LDI
Sbjct: 597 AQLWETTMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETHSAELDMTNLDI 655


>gi|237741012|ref|ZP_04571493.1| DNA gyrase subunit B [Fusobacterium sp. 4_1_13]
 gi|229431056|gb|EEO41268.1| DNA gyrase subunit B [Fusobacterium sp. 4_1_13]
          Length = 635

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 265/584 (45%), Positives = 383/584 (65%), Gaps = 5/584 (0%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY D I V +
Sbjct: 2   SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGLHGVGVSVV
Sbjct: 61  LPDNIIEVIDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDF 187
           NALS WL++ +++ G I+   +  G  +  + + G+   N+ GT V F   ++IF    +
Sbjct: 121 NALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKIIGACDVNEHGTIVRFKADAEIFETLIY 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           NY TL +RL+EL++LN  + I+L D R  E +E T  + GGI  F++ + +    +++ P
Sbjct: 181 NYFTLSNRLKELAYLNKGLTITLSDLRKDEKKEETYKFDGGILDFLNEIVKDDTTIIEKP 240

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             +   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ I    +  
Sbjct: 241 FYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKVINDVGKAQ 300

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K     ++G+D REG   ++S K+P P+F  QTK KL +SEV  +V + V++ L  +
Sbjct: 301 GLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTIVSNSLKIF 360

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LE++P   K+I++K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ +  ++ E+
Sbjct: 361 LEDNPNITKVIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEI 420

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++TA GT IG+
Sbjct: 421 FIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGE 480

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
             FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M  LI+ G +YI  PPLY +  G
Sbjct: 481 T-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVASG 539

Query: 548 KSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           K + Y  ++  L++ L   +   +          G ++   L  
Sbjct: 540 KQIVYAYNDLELKNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWE 583



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 5/264 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +    +        +      +             +   FI +        K
Sbjct: 374 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 433

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                +++  +   +   + N E         +S++   +        +++  S      
Sbjct: 434 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 491

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           ++      V    +      F +      I++  +      +  +      +       L
Sbjct: 492 IILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVASGKQIVYAYNDLEL 551

Query: 723 LDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            + +   +   K  ++QRYKGLGEMN  QLWETT+NPD R LL+V I +A +AD LF +L
Sbjct: 552 KNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKL 611

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+VEPRREFI+E++     +DI
Sbjct: 612 MGDKVEPRREFIEEHAEYVKNIDI 635


>gi|256846674|ref|ZP_05552130.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_36A2]
 gi|294784381|ref|ZP_06749672.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_27]
 gi|256717894|gb|EEU31451.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_36A2]
 gi|294487953|gb|EFG35308.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_27]
          Length = 639

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 266/584 (45%), Positives = 382/584 (65%), Gaps = 5/584 (0%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY D I V +
Sbjct: 6   SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKI 64

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGLHGVGVSVV
Sbjct: 65  LPDNIIEVIDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDF 187
           NALS WL++ +++ G I+   +  G  +  + V G+   ++ GT V F    +IF    +
Sbjct: 125 NALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKVIGTCDESEHGTIVRFKADGEIFETLIY 184

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           NY TL +RL+EL++LN  + I+L D R  E +E T  + GGI  F++ + +    +++ P
Sbjct: 185 NYFTLSNRLKELAYLNKGLTITLSDLRKDEKKEETYKFDGGILDFLNEIVKDDTTIIEKP 244

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             +   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ I    +  
Sbjct: 245 FYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKVINDVGKAQ 304

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K     ++G+D REG   ++S K+P P+F  QTK KL +SEV  +V + V++ L  +
Sbjct: 305 GLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTIVSNSLKIF 364

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LE++P   KII++K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ +  ++ E+
Sbjct: 365 LEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEI 424

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++TA GT IG+
Sbjct: 425 FIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGE 484

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
             FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M  LI+ G +YI  PPLY +  G
Sbjct: 485 T-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVASG 543

Query: 548 KSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           K + Y  ++  L++ L   +   +          G ++   L  
Sbjct: 544 KQIVYAYNDLELKNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWE 587



 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 5/264 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +    +        +      +             +   FI +        K
Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 437

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                +++  +   +   + N E         +S++   +        +++  S      
Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 495

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           ++      V    +      F +      I++  +      +  +      +       L
Sbjct: 496 IILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVASGKQIVYAYNDLEL 555

Query: 723 LDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            + +   +   K  ++QRYKGLGEMN  QLWETT+NPD R LL+V I +A +AD LF +L
Sbjct: 556 KNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKL 615

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+VEPRREFI+E++     +DI
Sbjct: 616 MGDKVEPRREFIEEHAEYVKNIDI 639


>gi|311746751|ref|ZP_07720536.1| DNA gyrase, B subunit [Algoriphagus sp. PR1]
 gi|126578430|gb|EAZ82594.1| DNA gyrase, B subunit [Algoriphagus sp. PR1]
          Length = 652

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 294/603 (48%), Positives = 395/603 (65%), Gaps = 16/603 (2%)

Query: 1   MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+        Y A +IQ+L+GL+AV+KRP+MYIGD  G  GLHH+I+EV+DN++DE+L 
Sbjct: 1   MSEEKAKKPAGYGAGNIQVLEGLEAVRKRPAMYIGDV-GVKGLHHLIWEVVDNSVDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+ D I VT+N+D S TV DNGRGIPTD H++E  SA EV++T LHAGGKF++ +YKVSG
Sbjct: 60  GHCDTIHVTVNVDNSITVEDNGRGIPTDWHEKEQKSALEVVLTVLHAGGKFDKDTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS+ LK  + R+G I E  F  G+   P    G   +  GT + F P 
Sbjct: 120 GLHGVGVSCVNALSTDLKATVFRDGVITEQEFKIGVPQYPAKEVGKT-DKRGTMIHFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFVS 234
             IF+  ++ Y+T+ +RLRE++FLN+ V+I L D    +     R    + +GG+  FV 
Sbjct: 179 DSIFTHTEYKYETIANRLREMAFLNAGVRIFLKDLREIEEDGNARTDEFYSEGGLVEFVQ 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLD  ++ +++ PI I+G  +++ + +AM +N  Y ENV+ + N I   +GGTH++G R 
Sbjct: 239 YLDNTREKIIEEPIYIEGEFNSVPVQVAMNYNTSYSENVVSYVNTINTYEGGTHVTGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY +KS    K K  V GDD REG T+V+S+K+ +P+F  QTK KL +SEV  
Sbjct: 299 ALTRTLKSYADKSGMLDKLKLEVSGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVVG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+S V++ L +WLEEHP EAKIIV KV+ A+  R AAR+AR++ +RK VL    LPGKL
Sbjct: 359 AVDSAVSETLQSWLEEHPKEAKIIVGKVVLAAQARHAARKAREMVQRKNVLGGGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+  DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+A   K+  + EI
Sbjct: 419 ADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYDNDEI 478

Query: 475 GTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             ++TALG   G  + D       LRYHKIIIMTDAD+DG+HIRTL+LT FFR M +LI 
Sbjct: 479 KNILTALGVKFGTVNDDKELDLSNLRYHKIIIMTDADIDGSHIRTLILTLFFRYMRTLIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI----ELFCDSKGVISKND 586
            GF+YI  PPLY + RGK  +Y   EE  +      +   +            G ++   
Sbjct: 539 KGFIYIALPPLYLLKRGKDERYCWTEEERKLLTKEMAKDGKEDSVGIQRYKGLGEMNPEQ 598

Query: 587 LRN 589
           L  
Sbjct: 599 LWT 601



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 16/278 (5%)

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           P    I  GK +   +   +             +        +    +    + +   ++
Sbjct: 376 PKEAKIIVGKVVLAAQARHAARKAREMVQRKNVLGGGGLPGKLADCANSDPTVCELYLVE 435

Query: 599 KLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEK-SEKSWH 654
                      +    QA++     + N E   E  +    ++ N L  +  K    +  
Sbjct: 436 GDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYDNDEIKNILTALGVKFGTVNDD 495

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSF----GSKYKRIFSNR-IEENYLTILSLIC 709
             ++ S++   +I   +     ++GS I +       +Y R    +      L  L L+ 
Sbjct: 496 KELDLSNLRYHKII--IMTDADIDGSHIRTLILTLFFRYMRTLIEKGFIYIALPPLYLLK 553

Query: 710 NGDKIKITGPCSLLDTIFSI-GRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
            G   +          +     + G    + +QRYKGLGEMN  QLW TT++P+ R++ +
Sbjct: 554 RGKDERYCWTEEERKLLTKEMAKDGKEDSVGIQRYKGLGEMNPEQLWTTTMDPNVRTIKQ 613

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           V I  A++AD LFS LMGDEV PRREFI++N+  + +D
Sbjct: 614 VTIDSAAEADHLFSMLMGDEVAPRREFIEKNAKYAKID 651


>gi|284161217|ref|YP_003399840.1| DNA gyrase subunit beta [Archaeoglobus profundus DSM 5631]
 gi|284011214|gb|ADB57167.1| DNA gyrase, B subunit [Archaeoglobus profundus DSM 5631]
          Length = 632

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 284/637 (44%), Positives = 407/637 (63%), Gaps = 17/637 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A++I++L  + AV+KRP MY+G T G  G HH+++E++DN+IDE+L GY + I VT
Sbjct: 11  SDYTAEAIEVLDDIQAVRKRPGMYVGST-GSRGFHHLLWEIVDNSIDEALAGYCNRIVVT 69

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V DNGRGIP + H      A E++MT+LHAGGKF++K+YKVSGGLHGVG+SV
Sbjct: 70  LHKDGSASVEDNGRGIPVEEHPIFKKPALEIVMTKLHAGGKFSKKAYKVSGGLHGVGLSV 129

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL++ +KR G IY   +  G    PL V G    +TGT++ F P  +IF V++F
Sbjct: 130 VNALSEWLEVWVKRNGKIYYQRYERGKPVTPLKVVGETK-ETGTKIRFKPDPEIFEVKEF 188

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD +  RLREL+FLN  ++I LID+R+ +      + + GI  FV YL++  K ++   
Sbjct: 189 DYDVVAERLRELAFLNKGLRIKLIDERTGKV--KEFYSEEGIVGFVKYLNKG-KDVITDV 245

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + I G ++ I++++A ++ +   EN+L F NNI   +GGTH+SG R+ LTR I  Y +K 
Sbjct: 246 VYISGEKNGINVEIAFQFTNEDFENLLAFANNIHTIEGGTHVSGFRAGLTRAINEYGKKH 305

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
               K    + G D REG T+VLS+K+P+P+F  QTK KL +S+V++VVES V +    W
Sbjct: 306 ---VKKFTPISGSDIREGLTAVLSVKVPEPQFEGQTKTKLTNSDVKTVVESLVYNNFLRW 362

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEEHP EA+ I++K L A   R+ ARRAR+L +RK  +   +LPGKLADCS ++ ++ EL
Sbjct: 363 LEEHPSEAQRIIEKCLLAMKAREMARRARELVKRKAEI-SLTLPGKLADCSSKNVEEREL 421

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEG+SAGGSAKQ R R  QA+LP+RGKI+NVE+A   + L ++EI  + +A+G GIG+
Sbjct: 422 FIVEGESAGGSAKQARDRRFQAVLPIRGKIINVEKAGMLRALKNEEIKAIASAIGGGIGK 481

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FD++K+RY KIIIMTDADVDGAHIRTLLLTFF+R M  LI  G +YI  PPLY + +G
Sbjct: 482 D-FDLSKVRYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGMVYIALPPLYRVKKG 540

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
             + YV  E+ L D L    + +         G ++   L         ++   +     
Sbjct: 541 DKVYYVYSEKELRDVLKK--IGKAEVQRFKGLGEMNPEQLWETA-----MNPKTRKLVKV 593

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +  +    +  +   E+  E    + +      N 
Sbjct: 594 TIEDALIAEKMFRILMGENVDERKEFILNHAKEVKNL 630



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 3/184 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E    +      ++    + I     K +  S      ++      V    +    
Sbjct: 451 IINVEKAGMLRALKNEEIKAIASAIGGGIGKDFDLSKVRYGKIIIMTDADVDGAHIRTLL 510

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I +  +      +  +        +     L D +  IG+    +QR+K
Sbjct: 511 LTFFYRYMRPLIEAGMVYIALPPLYRVKKGDKVYYVYSEKELRDVLKKIGK--AEVQRFK 568

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWET +NP TR L++V I DA  A+ +F  LMG+ V+ R+EFI  ++    
Sbjct: 569 GLGEMNPEQLWETAMNPKTRKLVKVTIEDALIAEKMFRILMGENVDERKEFILNHAKEVK 628

Query: 800 ALDI 803
            LD+
Sbjct: 629 NLDV 632


>gi|237743164|ref|ZP_04573645.1| DNA gyrase subunit B [Fusobacterium sp. 7_1]
 gi|256027571|ref|ZP_05441405.1| DNA gyrase subunit B [Fusobacterium sp. D11]
 gi|289765530|ref|ZP_06524908.1| subunit B [Fusobacterium sp. D11]
 gi|229433460|gb|EEO43672.1| DNA gyrase subunit B [Fusobacterium sp. 7_1]
 gi|289717085|gb|EFD81097.1| subunit B [Fusobacterium sp. D11]
          Length = 635

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 264/584 (45%), Positives = 381/584 (65%), Gaps = 5/584 (0%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY D I V +
Sbjct: 2   SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGLHGVGVSVV
Sbjct: 61  LPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDF 187
           NALS WL++ +++ G ++   +  G  +  + V G+   N+ GT V F    +IF    +
Sbjct: 121 NALSEWLEVEVRKNGTVHYQKYHRGKPEEDVKVIGTCDENEHGTTVRFKADGEIFETLVY 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           NY TL +RL+EL++LN  + I L D R  E +E    + GGI  F++ + + +  +++ P
Sbjct: 181 NYFTLSNRLKELAYLNKGLTIILSDLRKDEKKEEIYKFDGGILDFLNEIVKDETTIIEKP 240

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             +   +DN+ +D+   +    +E +  F N+I   +GGTH+ G R+ALT+ I    +  
Sbjct: 241 FFVSAEQDNVGVDVTFTYTTSQNEVIYSFVNDINTHEGGTHVQGFRTALTKVINDVGKAQ 300

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K     ++G+D REG   ++S K+P P+F  QTK KL +SEV  +V + V++ L  +
Sbjct: 301 GLLKDKDGKLMGNDIREGVVGIISTKIPQPQFEGQTKGKLGNSEVSGIVNTVVSNSLKIF 360

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LE++P   KII++K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ +  ++ E+
Sbjct: 361 LEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEI 420

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++TA GT IG+
Sbjct: 421 FIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGE 480

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
             FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M  LI+ G +YI  PPLY +  G
Sbjct: 481 T-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRHMIDLIYGGNVYIACPPLYKVAAG 539

Query: 548 KSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           K + Y  ++  L++ L   +   +          G ++   L  
Sbjct: 540 KQIIYAYNDLELKNILGQMNQENKKYTIQRYKGLGEMNPEQLWE 583



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 101/264 (38%), Gaps = 5/264 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +    +        +      +             +   FI +        K
Sbjct: 374 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 433

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                +++  +   +   + N E         +S++   +        +++  S      
Sbjct: 434 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 491

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           ++      V    +      F +      I+   +      +  +      I       L
Sbjct: 492 IILMTDADVDGAHIRTLILTFLYRHMIDLIYGGNVYIACPPLYKVAAGKQIIYAYNDLEL 551

Query: 723 LDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            + +   +   K  ++QRYKGLGEMN  QLWETT+NPD R LL+V I +A +AD LF +L
Sbjct: 552 KNILGQMNQENKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKL 611

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+VEPRREFI+E++     +DI
Sbjct: 612 MGDKVEPRREFIEEHAEYVKNIDI 635


>gi|5817861|gb|AAD52967.1|AF167102_1 DNA gyrase beta subunit [Acholeplasma laidlawii]
          Length = 615

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 291/600 (48%), Positives = 398/600 (66%), Gaps = 6/600 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N  NS Y AD+IQIL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD 
Sbjct: 3   NNNNSHYTADNIQILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALCGYADE 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           IT+ +       V+DNGRGIP D+H +    A E I+T LHAGGKF++ SYKVSGGLHGV
Sbjct: 62  ITIEILKGEVIRVTDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVN LS W  + I ++G IYE  +  GI    L V GS  + +GT ++F     IF+
Sbjct: 122 GASVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFT 180

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               +NY+TL+ R+++L+FLN  ++++LID R  E +  +  Y+GGI  +V +L++ K  
Sbjct: 181 ETVIYNYETLRTRIQQLAFLNKGLKLNLIDDRFEENKSESFHYEGGITEYVKFLNQSKSK 240

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +    I I   +D I+++LAM++ D Y  N+  FTNNI   +GG H  G + AL+  I+ 
Sbjct: 241 IHNDIIYIDKEQDGITVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALSAVISK 300

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +          S+ G+D REG T+++S+K P+P+F  QTK KL + EVR++     ++
Sbjct: 301 YADDLKMK--KDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +  +L E+P +AK IV+KVL A+  R AAR+A+DLTRRK  LD      KLADC  +DP
Sbjct: 359 AIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDP 418

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           +KSE+++VEGDSAGGSAKQGR  E QAI+PLRGK+LNVE+AR DKMLS++EI  LI A+G
Sbjct: 419 EKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMG 478

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGI  D FDI K RYHKI+IMTDADVDGAHIRTLLLTF FR M  LI  G++Y  +PPLY
Sbjct: 479 TGI-SDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLY 537

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I+ G++ QY  +E+ L + L        I+ +     + ++      +D A +    IK
Sbjct: 538 KISWGRNFQYRYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 597



 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 6/136 (4%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G  +  DI   R  + V      ++G+ I +    +  R     I+  Y       L  
Sbjct: 479 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 538

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           I  G   +       L+ +        S+QRYKGLGEM+A QLW+TT++P  R+LL++K+
Sbjct: 539 ISWGRNFQYRYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 598

Query: 768 TDASQADDLFSRLMGD 783
            DA +AD +FS LMG+
Sbjct: 599 EDAIEADQVFSMLMGE 614


>gi|34763292|ref|ZP_00144250.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887040|gb|EAA24153.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 639

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/592 (45%), Positives = 384/592 (64%), Gaps = 8/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +N+   SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY
Sbjct: 1   MEENM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +  +    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGL
Sbjct: 57  CDKIEVKILPENIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179
           HGVGVSVVNALS WL++ +++ G I+   +  G  +  + + GS   N+ GT V F    
Sbjct: 117 HGVGVSVVNALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKIVGSCDINEHGTIVRFKADG 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    +NY TL +RL+EL++LN  + I L D R  E +E    + GGI  F++ + + 
Sbjct: 177 EIFETLIYNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEEIYKFDGGILDFLNEIVKE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
              +++ P  +   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ 
Sbjct: 237 DTTIIEKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I    +     K     ++G+D REG   ++S K+P P+F  QTK KL +SEV  +V + 
Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L  +LE++P   KII++K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ 
Sbjct: 357 VSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +  ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++T
Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GT IG+  FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M  LI+ G +YI  P
Sbjct: 477 AFGTSIGET-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           PLY +  GK + Y  ++  L++ L   +   +          G ++   L  
Sbjct: 536 PLYKVASGKQIVYAYNDLELKNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWE 587



 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 5/264 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +    +        +      +             +   FI +        K
Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 437

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                +++  +   +   + N E         +S++   +        +++  S      
Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 495

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           ++      V    +      F +      I++  +      +  +      +       L
Sbjct: 496 IILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVASGKQIVYAYNDLEL 555

Query: 723 LDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            + +   +   K  ++QRYKGLGEMN  QLWETT+NPD R LL+V I +A +AD LF +L
Sbjct: 556 KNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKL 615

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+VEPRREFI+E++     +DI
Sbjct: 616 MGDKVEPRREFIEEHAEYVKNIDI 639


>gi|303240062|ref|ZP_07326583.1| DNA gyrase, B subunit [Acetivibrio cellulolyticus CD2]
 gi|302592331|gb|EFL62058.1| DNA gyrase, B subunit [Acetivibrio cellulolyticus CD2]
          Length = 641

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 294/647 (45%), Positives = 416/647 (64%), Gaps = 11/647 (1%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+N   N SY+  +IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G
Sbjct: 1   MSENANLNLSYNESNIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIMDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I +T+N D S T  DNGRGIP  +H + GI   EV+ T LHAGGKF  + Y VSGG
Sbjct: 60  YCTEIEITINPDNSITNIDNGRGIPVGIHPKMGIPTVEVVHTILHAGGKFGGEGYTVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS +L++ + R+GNIY+  +  G +   L V       TGT+ TF P S
Sbjct: 120 LHGVGASVVNALSEYLEVEVYRDGNIYKQRYERGNVATKLEVI-GTTEKTGTKTTFKPDS 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF   +F++D L +R REL+FLN  + I+LIDKR  EP    + Y+GGI +FV Y++R+
Sbjct: 179 LIFEEMEFSFDILLNRFRELAFLNKGLMITLIDKRPEEPIVKKLHYEGGIISFVEYMNRN 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  + + PI I  S+D  +++++M++ND Y EN+  F NNI   +GGTHL+G ++A+T+ 
Sbjct: 239 KGVIQEHPIYIDCSKDGSNVEISMQYNDTYVENIFSFANNIATTEGGTHLTGFKTAITKV 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
              Y  K    K + +++ G+D REG T+V+S+K+ +P+F  QTK KL +SE+RS+VE  
Sbjct: 299 FNDYARKYNYLKDNDKNLAGEDIREGLTAVISVKLQEPQFEGQTKTKLGNSEIRSLVEFT 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+++LEE+P   K I+ K L A+  R+AAR+ARDLTRRK  L+  +LPGKLADCSE
Sbjct: 359 VGEKLASFLEENPSVTKTILDKCLTAARAREAARKARDLTRRKSALETTTLPGKLADCSE 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP   E+++VEGDSAGGSAKQGR R+ QAILPL GK+LNVE++R DK+  ++++  +IT
Sbjct: 419 KDPSLCEIYIVEGDSAGGSAKQGRDRKFQAILPLWGKMLNVEKSRIDKVYDNEKLLPVIT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG  IG D FD+ KLRYHKIIIM DADVDG HIRTLLLTF FR M  L+  G++YI +P
Sbjct: 479 ALGASIG-DDFDVEKLRYHKIIIMADADVDGQHIRTLLLTFMFRYMKPLVEGGYVYIAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRNFIDDALKI 597
           PL+ I +GK   Y  +E+ +++++  +     E         G ++   L         +
Sbjct: 538 PLFKIAKGKEEGYAYNEKQVDNFINEKGWKKDECSIQRYKGLGEMNPEQLWET-----TM 592

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +   +          I    I  +   +  +     + +      N 
Sbjct: 593 NPETRTMLRVELSDAIAADEIFTILMGDKVEPRKEFIQTHAKTVTNL 639



 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    KL   +  +       +         ++      V  Q +    
Sbjct: 456 MLNVEKSRIDKVYDNEKLLPVITALGASIGDDFDVEKLRYHKIIIMADADVDGQHIRTLL 515

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738
             F F      +    +      +  +    ++        + + I   G K    S+QR
Sbjct: 516 LTFMFRYMKPLVEGGYVYIAQPPLFKIAKGKEEGYAYNEKQVDNFINEKGWKKDECSIQR 575

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT+NP+TR++LRV+++DA  AD++F+ LMGD+VEPR+EFIQ ++  
Sbjct: 576 YKGLGEMNPEQLWETTMNPETRTMLRVELSDAIAADEIFTILMGDKVEPRKEFIQTHAKT 635

Query: 799 S-ALDI 803
              LDI
Sbjct: 636 VTNLDI 641


>gi|256545954|ref|ZP_05473309.1| DNA gyrase, B subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398376|gb|EEU11998.1| DNA gyrase, B subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 634

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 281/585 (48%), Positives = 404/585 (69%), Gaps = 5/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++NS Y+A +I++LKGL+ V+ RP MYIG T  E GLHH++YEV+DN++DE+L G  D I
Sbjct: 1   MENSEYNASNIRVLKGLEPVRLRPGMYIGSTS-ERGLHHLVYEVVDNSVDEALAGRCDYI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            ++++ +   TV D+G GIP + H + G S  E ++T LHAGGKF+ K+YKVSGGLHGVG
Sbjct: 60  KISIDENNIVTVEDDGSGIPIEKHPQTGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS +L   +KREG+I+ M+F  G   + L + G    ++GT++TF    +IF V
Sbjct: 120 VSVVNALSEYLIAEVKREGHIHRMTFERGKPTSDLEIVGDTK-ESGTKITFKADPEIFDV 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             ++  TL++R RE++FLN  V+  LI +   +  EI   Y GGI+ FV YL+R+K P+ 
Sbjct: 179 TVYDKKTLENRFREMAFLNKGVR--LIFEDKRDESEIEFKYDGGIKEFVEYLNRNKTPIF 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +     +G +++  I+++ ++ DGY EN+L F NNI   +GGTHLSG RSALTR +  Y 
Sbjct: 237 KEVPYFEGRQESTEIEISFQYTDGYSENILTFANNIYTLEGGTHLSGFRSALTRSVNDYA 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K+++ ++ GDD REG T+++S+K+ +P+F  QTK KL +SEVR  V++F ++ +
Sbjct: 297 RKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDAFFSEHM 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +LEE+P  AK I++K L +   R+AAR+ARDLTR++ +LD  +LPGKLADC  +D  +
Sbjct: 357 GNFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQSQDIGE 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+F+VEG+SAGGSAK GR    QAILPLRGKI+NVE+A  D++L+ +EI ++ITA GTG
Sbjct: 417 NEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMITAFGTG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG + FDI+KLRY KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY I
Sbjct: 477 IGSE-FDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDGGHIYIAQPPLYKI 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + GK  +Y   ++ L++ +    +           G ++   L  
Sbjct: 536 SSGKKERYCYTDKELDEIVKEWKVDNYKISRYKGLGEMNAEQLWE 580



 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 14/181 (7%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---------VQEQFVLEGSSIFSFG 686
           + L   LN+   KS  +  G+   S+  + ++  G         V    +      F + 
Sbjct: 455 ANLDRILNYEEIKSMITAFGTGIGSEFDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYR 514

Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGEM 745
                +    I      +  +     +         LD I    +     + RYKGLGEM
Sbjct: 515 YMKPLVDGGHIYIAQPPLYKISSGKKERYCYTDKE-LDEIVKEWKVDNYKISRYKGLGEM 573

Query: 746 NASQLWETTLNPDTRSLLRV--KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           NA QLWETT++P+ R LL+V  K       D  FS LMG++VEPRREFI+EN+     LD
Sbjct: 574 NAEQLWETTMDPENRVLLQVYEKEDSQMSTDATFSMLMGEKVEPRREFIEENAQYVENLD 633

Query: 803 I 803
           +
Sbjct: 634 V 634


>gi|148241191|ref|YP_001226348.1| DNA gyrase subunit B [Synechococcus sp. RCC307]
 gi|147849501|emb|CAK26995.1| DNA gyrase subunit B [Synechococcus sp. RCC307]
          Length = 657

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 282/568 (49%), Positives = 385/568 (67%), Gaps = 9/568 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S +   ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G+ 
Sbjct: 8   SSSQVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGHC 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V L  DGSC+V+DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGGLH
Sbjct: 67  NTIDVCLRADGSCSVADNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGSGGYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS W+++ + R+  ++   F  G     L         TGT V F P  +I
Sbjct: 127 GVGVSVVNALSEWVEVTVHRQDKVHRQRFERGAPIGSLASEAGEKGRTGTSVCFKPDIEI 186

Query: 182 FSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMFYKGGIEAFVS 234
           F+    F+Y TL  RLREL++LN  V+I   D+R        +P E   FY+GGI  +V+
Sbjct: 187 FTGGISFDYATLSGRLRELAYLNGGVKIVFRDERPEAAGEDGQPHEEIYFYEGGIREYVN 246

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           Y++  K PL    I +   +D + ++ A++W  D Y +++L F NNI   DGGTH+ GL+
Sbjct: 247 YMNAEKDPLHPDIIYVNSEKDGVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLK 306

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           + LTR + ++  K    K    ++ G++ REG T+VLS+K+PDP F  QTK KL ++EVR
Sbjct: 307 TVLTRTLNTFARKRGKRKDSDGNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVR 366

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V++ V + LS +LE HP    +I++K + A    +AARRAR+L RRK VL+ ++LPGK
Sbjct: 367 GIVDTVVGEALSEYLEFHPQVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGK 426

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS RDP +SE+++VEGDSAGGSAKQGR R NQAILPLRGKILN+E+    K+  + E
Sbjct: 427 LADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNIEKTDDAKIYKNTE 486

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  LITALG GI  + FD++ LRYH+I+IMTDADVDGAHIRTL+LTFF+R    L+  G+
Sbjct: 487 IQALITALGLGIKGEEFDVSNLRYHRIVIMTDADVDGAHIRTLILTFFYRYQRELVEGGY 546

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLED 561
           +YI  PPLY + RGK+  Y  +E+ L+ 
Sbjct: 547 IYIACPPLYKVERGKNHTYCYNEQDLKK 574



 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 32/332 (9%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561
           +D ++ G +IR  L      ++P     G     +    + GI      + + +      
Sbjct: 326 SDGNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDTVVGEALSEYLEFHP 385

Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616
            +I+  L + I+ F  ++      +L  R  + ++  +   + D         + +I + 
Sbjct: 386 QVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEG 445

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDI 662
             +G    +     N ++       LN       K +  +                  D+
Sbjct: 446 DSAGGSAKQGRDRRNQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDV 505

Query: 663 LVKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIF--SNRIEENYLTILSLICNGDKIK 715
              R  R V      ++G+ I +    F  +Y+R       I      +  +    +   
Sbjct: 506 SNLRYHRIVIMTDADVDGAHIRTLILTFFYRYQRELVEGGYIYIACPPLYKVERGKNHTY 565

Query: 716 ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                 L  T+   G K   ++QR+KGLGEM   QLWETT++P TR++ RV+I DA+QAD
Sbjct: 566 CYNEQDLKKTLDGFGEKANYTIQRFKGLGEMMPQQLWETTMDPTTRTMKRVEIEDAAQAD 625

Query: 775 DLFSRLMGDEVEPRREFIQENS--LP-SALDI 803
            +F+ LMGD+V PRREFI+ +S  L  + LDI
Sbjct: 626 RIFTILMGDKVAPRREFIETHSAELNLADLDI 657


>gi|326799865|ref|YP_004317684.1| DNA gyrase B subunit [Sphingobacterium sp. 21]
 gi|326550629|gb|ADZ79014.1| DNA gyrase, B subunit [Sphingobacterium sp. 21]
          Length = 652

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 291/603 (48%), Positives = 401/603 (66%), Gaps = 16/603 (2%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+ N   S+Y AD+IQ+L+GL+AV+KRPSMYIGD  G  GLHH++YEV+DN+IDE+L G
Sbjct: 1   MSEENKNKSNYSADNIQVLEGLEAVRKRPSMYIGDV-GVKGLHHLVYEVVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I V ++ D S TV DNGRGIPT ++K+E  SA E++MT LHAGGKF++ +YKVSGG
Sbjct: 60  YCTDIHVIIHKDNSITVEDNGRGIPTGINKKENKSALEMVMTMLHAGGKFDKDTYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ L   + REG I++  +  G     + V G   + TGT VTF P  
Sbjct: 120 LHGVGVSCVNALSTLLIAEVHREGKIFKQEYAQGKPLYDVKVIGET-DRTGTNVTFHPDP 178

Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFVS 234
            IF++   ++YDTL  RLREL++LN  ++++L+D+R  +     R    + +GG+  FV 
Sbjct: 179 SIFTMTTTYSYDTLAGRLRELAYLNKGIRLTLLDEREEQEDGALRHEEFYSEGGLSEFVK 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD +++PL+  PI ++G +  I ++LA+++ND Y ENV  + NNI   +GGTH++G R 
Sbjct: 239 FLDGNRQPLIPDPIHVEGIKQGIPVELALQYNDTYSENVHSYVNNINTIEGGTHVAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR + +Y +KS   K  K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV  
Sbjct: 299 GLTRTLKAYADKSGLLKNLKVEITGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V + L  +LEE+P EAK IV+KV+ A+  R AAR+ARD+ +RK V+  + LPGKL
Sbjct: 359 AVDVAVGEILGTYLEENPREAKAIVQKVIIAAQARAAARKARDMVQRKTVMGGSGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+  DP K E++LVEGDSAGG+AKQGR+RE QAILPLRGKILNVE+A   K+  ++EI
Sbjct: 419 ADCANNDPAKCEIYLVEGDSAGGTAKQGRNREFQAILPLRGKILNVEKAMEHKIYENEEI 478

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TALG  IG           KLRYH+IIIMTDADVDG+HI TL+LTF+FR M  LI 
Sbjct: 479 KNMFTALGVSIGTPEDAKALNLEKLRYHRIIIMTDADVDGSHITTLILTFYFRYMKELIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL----SEEIELFCDSKGVISKND 586
            G++YI  PPLY + +GK  +Y  +E      +                    G ++   
Sbjct: 539 RGYVYIATPPLYLVKKGKEHEYAWNENQRLAAIQRLKGAGKEDSVHVQRYKGLGEMNAEQ 598

Query: 587 LRN 589
           L +
Sbjct: 599 LWD 601



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 9/124 (7%)

Query: 689 YKRIFSNRIEENYL----TILSLICNGDKIKITGPC----SLLDTIFSIGR-KGISMQRY 739
           Y R     IE  Y+      L L+  G + +         + +  +   G+   + +QRY
Sbjct: 529 YFRYMKELIERGYVYIATPPLYLVKKGKEHEYAWNENQRLAAIQRLKGAGKEDSVHVQRY 588

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA QLW+TT+NP+TR+L +V I +A++ D +FS LMGDEV PRREFI+ N+  +
Sbjct: 589 KGLGEMNAEQLWDTTMNPETRTLRQVSIENAAECDRVFSMLMGDEVAPRREFIERNAKYA 648

Query: 800 ALDI 803
            +D+
Sbjct: 649 KIDV 652


>gi|332829228|gb|EGK01882.1| DNA gyrase, B subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 651

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 292/632 (46%), Positives = 398/632 (62%), Gaps = 18/632 (2%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M++   +   SY A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L 
Sbjct: 1   MTEKQKMAGESYSAQNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I VT++ D S +V DNGRGIP D+ ++E  SA EV++T LHAGGKF++ +YKVSG
Sbjct: 60  GYCDDIKVTIHEDNSISVKDNGRGIPVDIMEKEKKSALEVVLTVLHAGGKFDKGTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS+ L+  I ++GNIY   +  G     +   G    D GT +TF P 
Sbjct: 120 GLHGVGVSCVNALSTHLRAEIHKQGNIYVQEYSCGKPLTAVEKIGETK-DNGTTITFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFVS 234
             IF+V ++ YDTL  RLREL+FLN+ V++SL D    K     R    + + G+E FV 
Sbjct: 179 DTIFTVTEYKYDTLASRLRELAFLNAGVRLSLTDLRQKKEDGTFRTDIFYSERGLEEFVR 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y+D  K+ L+   I I   +  + +++AM +N  Y+ENV  + NNI   +GGTHL+G R 
Sbjct: 239 YIDASKEALIDDVIHIVTEKQGVPVEVAMTYNTSYNENVYSYVNNIHTIEGGTHLTGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           AL+R +  Y +     +K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV  
Sbjct: 299 ALSRTLKKYADDMKMLEKVKIEISGDDFREGLTAVVSIKVAEPQFEGQTKTKLGNNEVIG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V + L  +LEEHP EAKIIV+KV+ A+  R AAR+AR++ +RK  L    LPGKL
Sbjct: 359 AVDQAVGEALGHFLEEHPKEAKIIVEKVILAATARAAARKAREMVQRKSPLTGGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +D    E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+L S EI
Sbjct: 419 ADCSSKDASNCEIFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMPHKVLESDEI 478

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TALG  IG D         KLRYHK++IMTDADVDG+HI TL+LTFFFR M +L+ 
Sbjct: 479 KNIYTALGVSIGTDEDSKELNLEKLRYHKVVIMTDADVDGSHIATLILTFFFRHMKALLE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI  PPLY   +GK  +Y  D+     ++      +E  +       + +      
Sbjct: 539 KGYVYIATPPLYLCKKGKVEEYCWDDRQRRAFIDKYGDGDENSIHTQRYKGLGE------ 592

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++     D  +   +    +  IE A  +   
Sbjct: 593 MNAIQLWDTTMNPEHRTLRQVTIENAAEADHI 624



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 55/66 (83%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLW+TT+NP+ R+L +V I +A++AD +FS LMG++V PRREFI+EN+
Sbjct: 585 QRYKGLGEMNAIQLWDTTMNPEHRTLRQVTIENAAEADHIFSMLMGEDVAPRREFIEENA 644

Query: 797 LPSALD 802
             + +D
Sbjct: 645 TYAKID 650


>gi|288925541|ref|ZP_06419474.1| DNA gyrase, B subunit [Prevotella buccae D17]
 gi|315606674|ref|ZP_07881685.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
           ATCC 33574]
 gi|288337757|gb|EFC76110.1| DNA gyrase, B subunit [Prevotella buccae D17]
 gi|315251684|gb|EFU31662.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
           ATCC 33574]
          Length = 656

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 274/649 (42%), Positives = 396/649 (61%), Gaps = 15/649 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N+   ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++ E +DN+IDE++ G
Sbjct: 1   MAENLNTENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV D+GRGIP D HK+   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCKNIEVTINEDNSITVQDDGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALSS +  ++ R+G IY+  +  G    P+ V G      GT   F P  
Sbjct: 120 LHGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGETDRQ-GTRQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQI---SLIDKRSPEPREITMFYKGGIEAFVSYL 236
            +F+   + +D +  R+REL+FLN+ ++I    L      + RE     + G++ FV Y+
Sbjct: 179 TVFTTTVYKWDIIASRMRELAFLNAGIRITLRDLRPDEEGKTREEVFHAEQGLKEFVRYV 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  +  + I++A+ +N  Y EN+  + NNI   +GGTHL+G R+AL
Sbjct: 239 DRHRTHLFDDVIYLKTEKQGVPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAAL 298

Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 TRVLKAYADNDAQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + L+ +LEEHP+EAK I +KV+ A+  R AAR+AR+  +RK V+    LPG
Sbjct: 359 AGAVQQAVGEALNNYLEEHPVEAKKICEKVVLAATARIAARKARESVQRKSVMSGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ ++ ++  ++
Sbjct: 419 KLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478

Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 SVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LYI  PPLY  T  K+ +Y   E+  + ++       E +    ++      ++
Sbjct: 539 VIEEGHLYIATPPLYKCTYKKASEYCYTEQQRQAFIDKYVEGREDDKALHTQRYKGLGEM 598

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                    +D   +     + +   E   I  +   +  +     +  
Sbjct: 599 NPEQLWETTMDPATRLLKQVNIQNAAEADEIFSMLMGDDVEPRREFIEK 647



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 59/77 (76%), Gaps = 3/77 (3%)

Query: 729 IGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
            GR   K +  QRYKGLGEMN  QLWETT++P TR L +V I +A++AD++FS LMGD+V
Sbjct: 579 EGREDDKALHTQRYKGLGEMNPEQLWETTMDPATRLLKQVNIQNAAEADEIFSMLMGDDV 638

Query: 786 EPRREFIQENSLPSALD 802
           EPRREFI++N+  + +D
Sbjct: 639 EPRREFIEKNATYANID 655


>gi|254302374|ref|ZP_04969732.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322566|gb|EDK87816.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 635

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 268/584 (45%), Positives = 383/584 (65%), Gaps = 5/584 (0%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY D I V +
Sbjct: 2   SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGLHGVGVSVV
Sbjct: 61  LPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDF 187
           NALS WL++ +++ G I+   +  G  +  + + GS   N+ GT V F    +IF    +
Sbjct: 121 NALSEWLEVEVRKAGVIHYQKYHRGKPEEDVKIIGSCDENEHGTIVRFKADGEIFETLIY 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           NY TL +RL+EL++LN  + I+L D R  E +E T  + GGI  F++ + +    +++ P
Sbjct: 181 NYFTLSNRLKELAYLNKGLTITLSDLRKDEKKEETYKFDGGILDFLNEIVKEDTTIIEKP 240

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             I   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ I    +  
Sbjct: 241 FYISSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKVINDVGKAQ 300

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K     ++G+D REG   ++S K+P P+F  QTK KL +SEV  +V + V++ L  +
Sbjct: 301 GLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTIVSNSLKIF 360

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LE++P   KII++K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ +  ++ E+
Sbjct: 361 LEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEI 420

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++TA GT IG+
Sbjct: 421 FIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGE 480

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
             FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M  LI+ G +YI  PPLY ++ G
Sbjct: 481 T-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVSSG 539

Query: 548 KSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           K + Y  ++  L++ L   +   +          G ++   L  
Sbjct: 540 KQIVYAYNDLELKNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWE 583



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 5/264 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +    +        +      +             +   FI +        K
Sbjct: 374 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 433

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                +++  +   +   + N E         +S++   +        +++  S      
Sbjct: 434 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 491

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           ++      V    +      F +      I++  +      +  +      +       L
Sbjct: 492 IILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVSSGKQIVYAYNDLEL 551

Query: 723 LDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            + +   +   K  ++QRYKGLGEMN  QLWETT+NPD R LL+V I +A +AD LF +L
Sbjct: 552 KNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKL 611

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+VEPRREFI+E++     +DI
Sbjct: 612 MGDKVEPRREFIEEHAEYVKNIDI 635


>gi|150024625|ref|YP_001295451.1| DNA gyrase B subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149771166|emb|CAL42633.1| DNA gyrase B subunit [Flavobacterium psychrophilum JIP02/86]
          Length = 647

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 278/599 (46%), Positives = 383/599 (63%), Gaps = 13/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD I+  +Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MSDEIKKDNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N DGS +V DNGRGIP  +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CDTIRVDINEDGSISVEDNGRGIPVGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G      GT VTF P  
Sbjct: 120 HGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVS 234
            IF+    ++YDTL  R+RELSFLN  + I+  DKR  +              G++ ++ 
Sbjct: 179 SIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNFVSEIFHSTEGLKEYIR 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLD +++P++   I +   +  I +++A+ +N  Y EN+  + NNI   +GGTHL G R+
Sbjct: 239 YLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S
Sbjct: 299 GLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVS 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++ +RK V+    LPGKL
Sbjct: 359 PVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           +DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI
Sbjct: 419 SDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEI 478

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TALG  IG           KLRYHK++IM DAD+DG+HI TL+LTFFFR M  LI 
Sbjct: 479 RNIFTALGVTIGTAEDSKALNLEKLRYHKVVIMCDADIDGSHISTLILTFFFRFMKELIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            G +YI  PPLY + +G   +Y  +E   +     +             G ++   L +
Sbjct: 539 QGHIYIATPPLYLVKKGNKKEYAWNEVQRDQ-ANERMGGSATIQRYKGLGEMNAEQLWD 596



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 56/68 (82%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMNA QLW+TTLNP+ R+L +V I   ++AD +FS LMGDEV PRREFI++
Sbjct: 579 TIQRYKGLGEMNAEQLWDTTLNPEFRTLRQVNIDSLAEADRVFSMLMGDEVPPRREFIEK 638

Query: 795 NSLPSALD 802
           N++ + +D
Sbjct: 639 NAVYANID 646


>gi|167753648|ref|ZP_02425775.1| hypothetical protein ALIPUT_01928 [Alistipes putredinis DSM 17216]
 gi|167658273|gb|EDS02403.1| hypothetical protein ALIPUT_01928 [Alistipes putredinis DSM 17216]
          Length = 652

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 288/604 (47%), Positives = 398/604 (65%), Gaps = 12/604 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q   Y A +IQ+L+GL+AV+KRP+MYIGD  GE GLHH++YEV+DN+IDE+L G+   
Sbjct: 9   KKQEEEYSASNIQVLEGLEAVRKRPAMYIGDI-GEKGLHHLVYEVVDNSIDEALAGHCTD 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+N D S TV DNGRGIPTD H++EG SA EV++T LHAGGKF++ SYKVSGGLHGV
Sbjct: 68  IDVTINEDNSITVKDNGRGIPTDFHEKEGKSALEVVLTVLHAGGKFDKGSYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVS VNALS+ L   I R+G I+  S+  G   +P+ V G   +D GT +TF P   IF+
Sbjct: 128 GVSCVNALSTLLIAEIHRDGKIFRQSYSKGAPTSPVEVIG-TCDDRGTTITFKPDGSIFT 186

Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDR 238
              ++ YD L +RLREL+FLN  + ++L+DKR    + E      + + G++ FV YLD 
Sbjct: 187 LTTEYKYDILANRLRELAFLNKGIHLNLLDKRQRDENGEYVGDHFYSEEGLKEFVEYLDA 246

Query: 239 HK-KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            + + + +S I I   ++ + +++AM++ND + ENV  + NNI   +GGTHL+G R ALT
Sbjct: 247 TRGQAITESIIYIDTEKNGVPVEVAMQYNDSFSENVHSYVNNINTIEGGTHLTGFRRALT 306

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +  Y E S    K K  + GDD REG T+V+S+K+ +P+F  QTK KL + EV + V+
Sbjct: 307 RTLKKYAEDSGMLAKLKFDINGDDFREGLTAVVSVKVAEPQFEGQTKTKLGNDEVSAAVD 366

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             ++  LS +LEE+P +AK IV+KV+ A+  R AAR AR++ +RK VL  A LPGKLADC
Sbjct: 367 QAMSTALSHYLEENPRDAKAIVQKVILAATARHAARHAREMVQRKTVLSGAGLPGKLADC 426

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S RD   +E+F VEGDSAGG+AKQGR R  QAI+PLRGKILN+E+A+  +M  ++EI  +
Sbjct: 427 SSRDRSIAEIFFVEGDSAGGTAKQGRDRNFQAIMPLRGKILNIEKAQEHRMWENEEIKNM 486

Query: 478 ITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
            TALG  IG +         KLRY KIIIMTDADVDG+HI TL+LTFFFR+M  LI NG 
Sbjct: 487 FTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFFFRKMKELIENGH 546

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI  PPL+ + +G+  +Y   E+  ++          ++ +     + S       ++ 
Sbjct: 547 VYIATPPLFLVKKGQQERYCWTEKERDEITAEMGKGVHVQRYKGLGEMNSHQLWETTMNP 606

Query: 594 ALKI 597
             +I
Sbjct: 607 DTRI 610



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 6/187 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E  QE  +    ++ N    +      E+  K+ +      D ++      V    
Sbjct: 466 ILNIEKAQEHRMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSH 525

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735
           +      F F  K K +  N         L L+  G + +        D I +   KG+ 
Sbjct: 526 IATLMLTFFF-RKMKELIENGHVYIATPPLFLVKKGQQERYCWTEKERDEITAEMGKGVH 584

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN+ QLWETT+NPDTR L +V I +A++AD +FS LMGDEV PRREFI+++
Sbjct: 585 VQRYKGLGEMNSHQLWETTMNPDTRILRKVTIDNAAEADRVFSMLMGDEVPPRREFIEKH 644

Query: 796 SLPSALD 802
           +  + +D
Sbjct: 645 AHYANID 651


>gi|212697384|ref|ZP_03305512.1| hypothetical protein ANHYDRO_01954 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675576|gb|EEB35183.1| hypothetical protein ANHYDRO_01954 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 634

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 279/585 (47%), Positives = 403/585 (68%), Gaps = 5/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N+ Y+A +I++LKGL+ V+ RP MYIG T  E GLHH++YEV+DN++DE+L G  D I
Sbjct: 1   MDNTQYNASNIRVLKGLEPVRLRPGMYIGSTS-ERGLHHLVYEVVDNSVDEALAGRCDYI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            ++++ +   TV D+G GIP + H + G S  E ++T LHAGGKF+ K+YKVSGGLHGVG
Sbjct: 60  KISIDENNIVTVEDDGSGIPIEKHPQTGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS +L   +KREG+IY M+F  G   + L + G    +TGT+++F    +IF V
Sbjct: 120 VSVVNALSEYLIAEVKREGHIYRMTFERGKSTSDLEIIGDTK-ETGTKISFKADPEIFDV 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             +N +TL++R RE++FLN  V+  LI +   +  E+   Y GGI+ FV YL+R+K P+ 
Sbjct: 179 TVYNKNTLENRFREMAFLNKGVR--LIFEDKRDESEVEFKYDGGIKEFVKYLNRNKTPIF 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +     +G +++  ++++ ++ DGY EN+L F NNI   +GGTHLSG RSALTR +  Y 
Sbjct: 237 KEIPYFEGRQESTEVEISFQYTDGYSENILTFANNIYTVEGGTHLSGFRSALTRSVNDYA 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K+++ ++ GDD REG T+++S+K+ +P+F  QTK KL +SEVR  V++F ++ +
Sbjct: 297 RKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDAFFSEHM 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
            ++LEE+P  AK I++K L +   R+AAR+ARDLTR++ +LD  +LPGKLADC  +D  +
Sbjct: 357 GSFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQSQDIGE 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+F+VEG+SAGGSAK GR    QAILPLRGKI+NVE+A  D++L+ +EI ++ITA GTG
Sbjct: 417 NEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMITAFGTG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG   FD++KLRY KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY +
Sbjct: 477 IG-QEFDLSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPPLYKV 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + GK  +Y   ++ LE+ +                G ++   L  
Sbjct: 536 SSGKKERYCYTDKELEEIVKEWKTDNYKISRYKGLGEMNAEQLWE 580



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 14/203 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + N E  + +  +  + +    +    +  K           +
Sbjct: 443 LPLRGKIMNVEKANLDRILNYEEIKSMITAFGTGIGQEFDLSKLRYGK-----------I 491

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F +      +    I      +  +     +        L 
Sbjct: 492 IIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPPLYKVSSGKKERYCYTDKELE 551

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV--KITDASQADDLFSRLM 781
           + +         + RYKGLGEMNA QLWETT++P+ R LL+V  K       D  FS LM
Sbjct: 552 EIVKEWKTDNYKISRYKGLGEMNAEQLWETTMDPENRVLLQVYEKEDSQMSTDATFSMLM 611

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           G++VEPRREFI+EN+     LD+
Sbjct: 612 GEKVEPRREFIEENAQYVENLDV 634


>gi|239616758|ref|YP_002940080.1| DNA gyrase, B subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505589|gb|ACR79076.1| DNA gyrase, B subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 631

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 286/628 (45%), Positives = 401/628 (63%), Gaps = 21/628 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y+A SI+ILKGL+ V++RP MYIG T G++GLHH+IYEV+DN+IDE + GY D I +
Sbjct: 2   STDYNAQSIKILKGLEPVRQRPGMYIGST-GKAGLHHLIYEVVDNSIDEVVGGYCDYIKI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DGS +V DNGRGIP D+H E G SA EV+MT LHAGGKF++ SYK+SGGLHGVGVS
Sbjct: 61  TIFEDGSVSVWDNGRGIPVDIHPETGTSALEVVMTTLHAGGKFSKDSYKISGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W+++++ R+G IY   +  G    P+ + G   +  G+ V F P S +F+  D
Sbjct: 121 VVNALSEWMEVKVYRDGKIYRQRYERGKPTTPVEIIGET-DKRGSLVAFKPDSLVFTTTD 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F++D L+ R +EL+FLN  V I   D+R  E R      +GGI  FV YL+R K  + + 
Sbjct: 180 FDFDILESRFKELAFLNPRVTIEFEDRRYDEKRVFHF--EGGIVEFVKYLNRKKTAINKE 237

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P  I+G+ +++ I LAM++ + Y EN+L F NNI   +GGTHL+G ++ LT+ +  Y  K
Sbjct: 238 PFYIEGTYNDVKIQLAMQYTNAYDENILTFVNNIKTVEGGTHLTGFKTVLTKMMNDYARK 297

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K    ++ G+D REG T+VLS+ + +P+F  QTK KL + EV   V   + D L  
Sbjct: 298 LNVLKDKDPNLQGEDVREGLTAVLSVFVKEPQFEGQTKAKLGNEEVYEAVIKVLRDKLPE 357

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
             + H  E K I+ K LDA+  R AA++AR++ RRK  L+  +LPGKLADC+  D + +E
Sbjct: 358 VFDYHTKELKAIIIKALDAAKARVAAKKAREMIRRKNALENTTLPGKLADCTSTDLETTE 417

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSAGGSAKQ R RE QAILPLRGKILNVE++ F+K+L +++I  +I A+GTGIG
Sbjct: 418 LFIVEGDSAGGSAKQARDREFQAILPLRGKILNVEKSSFEKLLKNEQINNIIVAIGTGIG 477

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D   +  LRY KIIIMTDADVDGAHIRTLLLT F+R M  LI+ G +YI + PLY +  
Sbjct: 478 DDC-KLENLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMTPLINAGHIYIAQAPLYKVEL 536

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR----------------NF 590
            +   Y   +E LE++L N    +         G ++ + L                   
Sbjct: 537 NRKKYYFYSDEELEEFLKNNDGKKVSIQRYKGLGEMNPDQLWETTMNPESRKLIKIEMED 596

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI 618
           +++A ++  ++        + FIE+  +
Sbjct: 597 VEEADRVFTILMGSEVEERREFIERHAL 624



 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++ N +  I                 ++      V    +    
Sbjct: 448 ILNVEKSSFEKLLKNEQINNIIVAIGTGIGDDCKLENLRYGKIIIMTDADVDGAHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               +      I +  I      +  +  N  K        L + + +   K +S+QRYK
Sbjct: 508 LTLFYRYMTPLINAGHIYIAQAPLYKVELNRKKYYFYSDEELEEFLKNNDGKKVSIQRYK 567

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL-PS 799
           GLGEMN  QLWETT+NP++R L+++++ D  +AD +F+ LMG EVE RREFI+ ++L  +
Sbjct: 568 GLGEMNPDQLWETTMNPESRKLIKIEMEDVEEADRVFTILMGSEVEERREFIERHALMIT 627

Query: 800 ALDI 803
            LD+
Sbjct: 628 ELDV 631


>gi|319952084|ref|YP_004163351.1| DNA gyrase subunit b [Cellulophaga algicola DSM 14237]
 gi|319420744|gb|ADV47853.1| DNA gyrase subunit B [Cellulophaga algicola DSM 14237]
          Length = 653

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 282/601 (46%), Positives = 400/601 (66%), Gaps = 13/601 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D  + ++Y ADSIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE++ G+ D
Sbjct: 8   DEQKKNNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGHCD 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            ITV +N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHG
Sbjct: 67  TITVAINEDNSITVRDNGRGIPVDIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVS VNALS  LK  + R G IYE  +  G    P+   G      GTEVTF P   IF
Sbjct: 127 VGVSCVNALSKDLKATVFRNGTIYEQEYQKGKALYPVKSIGETEI-RGTEVTFYPDETIF 185

Query: 183 SVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235
           +   +FNYDTL +R+RELS+LN  V I++ DKR  +        E   + + G++ F+ +
Sbjct: 186 TQTVEFNYDTLANRMRELSYLNKGVSITMTDKRQKDKDTPSGFHEERFYSEEGLKEFIKF 245

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LD +++PL++  I ++G ++ I +++AM +N  Y EN+  + NNI   +GGTHLSG R  
Sbjct: 246 LDGNREPLIKGVISMEGEKNGIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLSGFRRG 305

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y + S   +K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV + 
Sbjct: 306 LTSTLKKYADASGMLEKLKFEIQGDDFREGLTAIISVKVGEPQFEGQTKTKLGNREVSAA 365

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ LS +LEE+P +AKIIV+KV+ A+  R AA +AR++ +RK V+ I  LPGKL+
Sbjct: 366 VSQAVSEMLSDYLEENPEDAKIIVQKVVLAATARHAATKAREMVQRKTVMSIGGLPGKLS 425

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS++DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   ++  ++EI 
Sbjct: 426 DCSDQDPVNCEVFLVEGDSAGGTAKQGRDRMFQAILPLRGKILNVEKAMRHRVFENEEIK 485

Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTFFFR M  L+  
Sbjct: 486 NIYTALGVSIGTEEDSQALNLEKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRELVEA 545

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI  PPLY + +G   +Y  +++  ++   + + S  I+ +     + ++      +
Sbjct: 546 GHVYIATPPLYLVKKGAKKRYAWNDKERDEIAESFNGSVGIQRYKGLGEMNAEQLWDTTM 605

Query: 592 D 592
           +
Sbjct: 606 N 606



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 111/271 (40%), Gaps = 10/271 (3%)

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            + +     +  T+ + +   K   S+       S   + +       ++  +       
Sbjct: 391 KVVLAATARHAATKAREMVQRKTVMSIGGLPGKLSDCSDQDPVNCEVFLVEGDSAGGTAK 450

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                               +E+A+   VF  E  + I  +L   +    +  A   EK 
Sbjct: 451 QGRD-RMFQAILPLRGKILNVEKAMRHRVFENEEIKNIYTALGVSIGTEEDSQALNLEKL 509

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
            +        +V      V    +      F F    + + +  +       L L+  G 
Sbjct: 510 RYHK------VVIMCDADVDGSHIETLILTFFFRYMRELVEAGHVY-IATPPLYLVKKGA 562

Query: 713 KIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           K +        D I +    G + +QRYKGLGEMNA QLW+TT+NP+ R+L +V I +A+
Sbjct: 563 KKRYAWNDKERDEI-AESFNGSVGIQRYKGLGEMNAEQLWDTTMNPEFRTLRQVVIENAT 621

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           + D +FS LMGDEV PRREFI++N++ + +D
Sbjct: 622 ETDRVFSMLMGDEVPPRREFIEKNAVYANID 652


>gi|332885345|gb|EGK05596.1| DNA gyrase, B subunit [Dysgonomonas mossii DSM 22836]
          Length = 651

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 291/602 (48%), Positives = 398/602 (66%), Gaps = 15/602 (2%)

Query: 1   MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M++N +  + SY A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+IDE+L 
Sbjct: 1   MTENQKIASESYSAQNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I VT++ D S TV DNGRGIP D+  +E  SA EV++T LHAGGKF++ +YKVSG
Sbjct: 60  GYCDDIKVTIHEDNSITVQDNGRGIPVDIMAKEKKSALEVVLTVLHAGGKFDKGTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS++LK  + ++GN+Y   +  G     +   G   + TGT +TF P 
Sbjct: 120 GLHGVGVSCVNALSTYLKAEVHKQGNVYVQEYSCGKPQTGVEKIG-TTDHTGTIITFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
             IF V ++ YDTL  RLREL+FLN+ V++SL+D+R  +     +  T F + G+E FV 
Sbjct: 179 DSIFVVTEYKYDTLASRLRELAFLNAGVRLSLVDRRHVKEDGTFKTDTFFSEKGLEEFVR 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y+D  K+ L+   I I   +  + +++AM +N  Y+ENV  + NNI   +GGTHL+G R 
Sbjct: 239 YIDASKEALIDDVIHIVTEKQGVPVEVAMTYNTSYNENVYSYVNNIHTIEGGTHLTGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            L+R +  Y + S   +K K  + GDD REG T+V+SIK+ +P+F  QTK KL ++EV  
Sbjct: 299 GLSRTLKKYADDSKMLEKVKVEISGDDFREGLTAVVSIKVAEPQFEGQTKTKLGNNEVIG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V + L  +LEEHP EAKIIV+KV+ A+  R AAR+AR+L +RK  L    LPGKL
Sbjct: 359 AVDQAVGEALGIYLEEHPKEAKIIVEKVILAATARAAARKARELVQRKSPLTGGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +D    E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+L S EI
Sbjct: 419 ADCSSKDASICEIFLVEGDSAGGTAKQGRDRGFQAILPLRGKILNVEKAMPHKVLESDEI 478

Query: 475 GTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TALG  IG +         KLRY K++IMTDADVDG+HI TL+LTFFFR M +L+ 
Sbjct: 479 KNIYTALGVTIGTEEDSKELNLQKLRYQKVVIMTDADVDGSHIATLILTFFFRHMKALLE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587
            G++YI  PPLY   +GK+ +Y  D+     ++   +  +E  +        G ++   L
Sbjct: 539 KGYIYIATPPLYLCRKGKNEEYCWDDRQRRAFIEKYADGDENAIHTQRYKGLGEMNAEQL 598

Query: 588 RN 589
            +
Sbjct: 599 WD 600



 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 19/207 (9%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   V   +  + I  +L   +        E+  K  +        +
Sbjct: 455 LPLRGKILNVEKAMPHKVLESDEIKNIYTALGVTIG------TEEDSKELNLQKLRYQKV 508

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIK-ITG 718
           V      V    +      F F     R     +E+ Y+      L L   G   +    
Sbjct: 509 VIMTDADVDGSHIATLILTFFF-----RHMKALLEKGYIYIATPPLYLCRKGKNEEYCWD 563

Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                  I          I  QRYKGLGEMNA QLW+TT+NP+ R+L +V I +A++AD 
Sbjct: 564 DRQRRAFIEKYADGDENAIHTQRYKGLGEMNAEQLWDTTMNPEHRTLRQVTIENAAEADH 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802
           +FS LMG++V PRREFI+EN+  + +D
Sbjct: 624 VFSMLMGEDVAPRREFIEENATYAKID 650


>gi|291461019|ref|ZP_06026484.2| DNA gyrase, B subunit [Fusobacterium periodonticum ATCC 33693]
 gi|291379423|gb|EFE86941.1| DNA gyrase, B subunit [Fusobacterium periodonticum ATCC 33693]
          Length = 639

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 267/592 (45%), Positives = 387/592 (65%), Gaps = 8/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + +   SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY
Sbjct: 1   MEEKM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V +  D    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGL
Sbjct: 57  CNKIDVKILPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVGVSVVNALS WL++ +++EGN+Y   +  G  +  + + GS    + GT V F    
Sbjct: 117 HGVGVSVVNALSEWLEVEVRKEGNVYYQKYYRGKPEEDVKIIGSCEESEHGTTVRFKADR 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           DIF    +NY TL +RL+EL++LN  + I+L D R  E +E T  + GGI  F++ + + 
Sbjct: 177 DIFETLIYNYFTLSNRLKELAYLNRGLTITLSDLRKEEKKEETYKFDGGILDFLNEIVKE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +  ++  P  +   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ 
Sbjct: 237 EATIVDKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I    +     K     ++G+D REG  +++S K+P P+F  QTK KL +SE+  +V + 
Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEISGIVNTI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L  +LE++P   KI+++K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ 
Sbjct: 357 VSNSLKIFLEDNPAITKIVIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +  ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++T
Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GT IG+  FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M  LI  G +YI  P
Sbjct: 477 AFGTSIGET-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           PLY ++ GK + Y  ++  L++ L   +   +          G ++   L  
Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNVLGQMNQENKKYTIQRYKGLGEMNPEQLWE 587



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 132/354 (37%), Gaps = 20/354 (5%)

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK   + + +  K++ +     ++  + T I Q  F+            T   +  + I 
Sbjct: 301 GKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQ----------TKGKLGNSEIS 350

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
            ++ T     +  +       I K  +  I   K  +    +        +      +  
Sbjct: 351 GIVNTIVSNSLK-IFLEDNPAITKIVIEKILNSKKAREAAQKARELVLRKSVLEVGSLPG 409

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
                      +   FI +        K     +++  +   +   + N E         
Sbjct: 410 KLADCTSKKAEECEIFIVEGDSAGGSAKQGRDRYNQAIL--PLRGKIINVEKAGLHKSLE 467

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
           +S++   +        +++  S      ++      V    +   + I +F  +Y +   
Sbjct: 468 SSEIRAMVTAFGTSIGETFDISKLRYGKIILMTDADVDGAHI--RTLILTFLYRYMKDLI 525

Query: 695 NRIEENYLTILSLICNGDKIKITGPCSL-LDTI---FSIGRKGISMQRYKGLGEMNASQL 750
                          +  K  I     L L  +    +   K  ++QRYKGLGEMN  QL
Sbjct: 526 TEGNIYIACPPLYKVSSGKQIIYAYNDLELKNVLGQMNQENKKYTIQRYKGLGEMNPEQL 585

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           WETT+NPD R LL+V I +A +AD LF +LMGD+VEPRREFI+E++     +DI
Sbjct: 586 WETTMNPDGRLLLKVSIDNAREADMLFDKLMGDKVEPRREFIEEHAEYVKNIDI 639


>gi|281411537|ref|YP_003345616.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10]
 gi|281372640|gb|ADA66202.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10]
          Length = 636

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 279/589 (47%), Positives = 373/589 (63%), Gaps = 13/589 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A+SI++LKGL+ V+ RP MYIG T G+ GLHH++YEV+DN++DE+L GY D I VT
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYIGST-GKRGLHHLVYEVVDNSVDEALAGYCDWIRVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV
Sbjct: 61  LHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL++R+ R+G IY   +  G    P+ V G   +  GT V F P   IFS  +F
Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSETEF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           + D L+HRLRE++FL   ++I   D+ + E    T  + GGI  +V YL+R KK      
Sbjct: 180 DPDVLEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFDGGIVEYVKYLNRGKKVFHDVI 237

Query: 248 IRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +  +       D + +++A ++ D Y E+++ F N I   DGGTH++  ++ LTR +
Sbjct: 238 YMKRTEKVQTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKTMLTRLM 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K    K    S  G+D REG T+V+S+ + +P F  QTK KL + EV+  +   +
Sbjct: 298 NEYGKKHGFLK-GDDSFQGEDVREGLTAVVSVYVKNPEFEGQTKSKLGNEEVKEAINRVM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L    + +P   K I+ K++     R+AARRAR++ RRK VL   +LPGKLADCS  
Sbjct: 357 RDELKKIFDANPELVKTILSKIMSTKQAREAARRAREMVRRKNVLQNTTLPGKLADCSST 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILNVE++  DK+L +++I  +I A
Sbjct: 417 DREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDKLLKNEQISDIIVA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG D FD  KLRY +IIIMTDAD+DGAHIRTLLLT F+R M  LI  G +YI  PP
Sbjct: 477 VGTGIG-DDFDEGKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I  GK   YV  +  L +Y                 G ++   L  
Sbjct: 536 LYRIKAGKEEFYVYSDLELMEYKEKLQGKRIEIQRYKGLGEMNPEQLWE 584



 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++++ +  +       +         ++      +    +    
Sbjct: 453 ILNVEKSSLDKLLKNEQISDIIVAVGTGIGDDFDEGKLRYGRIIIMTDADIDGAHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
               +      I   R+      +  +    ++  +     L++    +  K I +QRYK
Sbjct: 513 LTLFYRYMRPLIEQGRVYIALPPLYRIKAGKEEFYVYSDLELMEYKEKLQGKRIEIQRYK 572

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT+NP+TR ++RV I DA +AD LF  LMG++   RREFI+ ++L   
Sbjct: 573 GLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHALKVK 632

Query: 800 ALDI 803
            LDI
Sbjct: 633 ELDI 636


>gi|290968148|ref|ZP_06559693.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290781823|gb|EFD94406.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 640

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 303/648 (46%), Positives = 427/648 (65%), Gaps = 14/648 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  +   Y A+ IQ+L+GL+AV+KRP MYIG T    GLHH++YEV+DN++DE+L G+
Sbjct: 1   MAEG-EKKDYGAEQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEVVDNSVDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+  D S TVSDNGRGIP  +HK  G  A EV++T LHAGGKF    Y +SGGL
Sbjct: 59  CTHIEVTIEADNSITVSDNGRGIPVAMHKV-GKPAVEVVLTVLHAGGKFGGDGYPISGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPS 178
           HGVG+SVVNALS   ++++KR+  ++++SF  GI +  L  T     G +TGT V F P 
Sbjct: 118 HGVGISVVNALSIQTEVKVKRDNYLWDISFARGITEKKLTKTRALEPGEETGTTVHFKPD 177

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +IF    +++DTL+ RLREL+FLN  + I+L D R    ++    Y+GG+ +FV +L+ 
Sbjct: 178 PEIFPDVVYDFDTLKTRLRELAFLNKGLHITLTDNR-EHNKQEVYCYEGGLISFVQFLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+ +  + I + G ++ + +D+AM++NDGY EN+L F N+I  ++GGTHLSG RSALTR
Sbjct: 237 NKQAVHPTVIPLDGEKNQVMVDIAMQYNDGYSENILTFVNDIFTEEGGTHLSGFRSALTR 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y   +   K+++ ++ G+D REG T+++S+K+ +P+F  QTK KL +SEV+ +V++
Sbjct: 297 TINDYGRSAGIIKENEDNLSGEDVREGLTAIVSVKVREPQFEGQTKTKLGNSEVKGIVDT 356

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V+DGL  +  EHP+EAK IV K + AS  R AARRAR+LTRRK  L+I+SLPGKLADCS
Sbjct: 357 LVSDGLREFFGEHPVEAKSIVNKTITASRARQAARRARELTRRKNALEISSLPGKLADCS 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+  +++E++LVEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+AR DK+L+++EI  +I
Sbjct: 417 EKSSERTEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKIINVEKARLDKILANEEIRAMI 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG++ FDI K RY KIIIMTDADVDGAHIRTLLLTFF+R M  LI  G +YI +
Sbjct: 477 TAFGTGIGEE-FDITKRRYDKIIIMTDADVDGAHIRTLLLTFFYRFMKPLITEGHVYIAQ 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALK 596
           PPLY + +GK + Y   +E++   L          +       G ++   L         
Sbjct: 536 PPLYQVRKGKQMWYFYTDETMNAKLDELGRDTNNIVVQRYKGLGEMNPEQLWET-----T 590

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +D   +     H +  +E   I  V   +  +     +        N 
Sbjct: 591 MDPEYRTMLQVHLEDAVEADRIFSVLMGDKVEPRRQFIQENAKKVRNL 638



 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +        + +  +    D ++      V    +    
Sbjct: 455 IINVEKARLDKILANEEIRAMITAFGTGIGEEFDITKRRYDKIIIMTDADVDGAHIRTLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GR--KGISMQ 737
             F +      I    +       L  +  G ++        ++      GR    I +Q
Sbjct: 515 LTFFYRFMKPLITEGHVY-IAQPPLYQVRKGKQMWYFYTDETMNAKLDELGRDTNNIVVQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN  QLWETT++P+ R++L+V + DA +AD +FS LMGD+VEPRR+FIQEN+ 
Sbjct: 574 RYKGLGEMNPEQLWETTMDPEYRTMLQVHLEDAVEADRIFSVLMGDKVEPRRQFIQENAK 633

Query: 798 PS-ALD 802
               LD
Sbjct: 634 KVRNLD 639


>gi|302344968|ref|YP_003813321.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845]
 gi|302149978|gb|ADK96240.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845]
          Length = 657

 Score =  603 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 278/650 (42%), Positives = 401/650 (61%), Gaps = 16/650 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N +N ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAENPENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV D+GRGIP D+H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCQNIEVTINEDNSITVEDDGRGIPVDMHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +K ++ R+G IY+  +  G    P+ V G   + TGT   F P  
Sbjct: 120 LHGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235
           +IF+   + +  +  R+REL++LN+ ++I+L D R    + + R      K G++ FV Y
Sbjct: 179 EIFTTTVYQWAIVARRMRELAYLNAGIKITLSDLRPDPETGKTRTEVFHAKDGLKEFVRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +DRH++ L    I ++  + NI I++A+ +N  Y EN+  + NNI   +GGTHL G R+A
Sbjct: 239 VDRHRQHLFDDVIYLKTEKQNIPIEVAVMYNTDYTENIHSYVNNINTIEGGTHLQGFRAA 298

Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LTR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SE
Sbjct: 299 LTRTLKTYADNDPQISKQLEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSE 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+  V + L+ +LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK V+    LP
Sbjct: 359 VSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ +  ++  +
Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478

Query: 472 QEIGTLITALGT-----GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + +  +I ++G      G G    + +KLRY KIIIMTDADVDG+HI TL++T F+R MP
Sbjct: 479 ESVMNIIQSIGVRFGVEGEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            +I  G LYI  PPLY  T  K  +Y   E+  + ++   +   E      ++      +
Sbjct: 539 KVIEQGHLYIATPPLYKCTYKKVNEYCYTEQQRQAFIDKYANGAEDAKAIHTQRYKGLGE 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           +         +D   +       +   +   I  +   +  +     +  
Sbjct: 599 MNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEK 648



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 56/71 (78%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I  QRYKGLGEMN  QLWETT++P TR L +V I +A+ AD++FS LMGD+VEPRREF
Sbjct: 586 KAIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREF 645

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 646 IEKNATYANID 656


>gi|320537025|ref|ZP_08037004.1| DNA gyrase, B subunit [Treponema phagedenis F0421]
 gi|320146100|gb|EFW37737.1| DNA gyrase, B subunit [Treponema phagedenis F0421]
          Length = 638

 Score =  603 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 285/637 (44%), Positives = 413/637 (64%), Gaps = 13/637 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + NS+Y A +I +L+GL+AV+KRP MYIG T G +GLHH++YEV+DN IDE++ G+ D I
Sbjct: 1   MTNSTYSASNITVLEGLEAVRKRPGMYIGST-GPNGLHHLVYEVVDNCIDEAMAGFCDRI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TV L  +    V DNGRGIP D+H +EGISA E+++T+LHAGGKF++ SYKVSGGLHGVG
Sbjct: 60  TVVLEKNDIVRVEDNGRGIPVDIHPQEGISALEIVLTKLHAGGKFDKGSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS+W++  + ++G  +   F  G+  + +    S  +  GT + +     IF  
Sbjct: 120 VSVVNALSTWMEATVYKDGAEHYQKFEIGVPLDSVKKI-STTDKHGTTIRWAADPAIFKE 178

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +++D L  RLREL+FLNS++ I + D+R   P+E T  ++GGI  FV YL   K+ L
Sbjct: 179 TTTYDFDVLATRLRELAFLNSNITIVMRDERLSTPKEATFAFEGGISHFVQYLHGTKQVL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI I+  +++I +++A+++NDGY+EN+L F N+I  ++GGTHL G +SALTR +  +
Sbjct: 239 PAEPIYIEAEKNDIIMEIALQYNDGYNENLLSFVNDINTREGGTHLEGFKSALTRVMNEF 298

Query: 304 VEKSFGSK---KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           ++K+         +  + G+D R G T+V+SIK+P+P+F  QTK KL +S+VR +V+SFV
Sbjct: 299 LKKNSKLIKKLDKEEKLTGEDVRAGLTAVISIKVPEPQFEGQTKTKLGNSDVRGIVDSFV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ + E++P     I++K +  +  R AARRA++ TRRK  LD   LPGKLADCS +
Sbjct: 359 NEKLTLFFEQNPAIIDKILEKTVSEATARIAARRAKEATRRKSGLDSFGLPGKLADCSLK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DPK  E+++VEGDSAGGSAK+GR  + QAILPL GK+LNVE+ R DK+++++++  +I +
Sbjct: 419 DPKLCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRIDKVMNNEKLQPIIAS 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D F+I+K+RYHKIIIM DADVDG+HIRTLLLTFFFR MP +I  G++Y+  PP
Sbjct: 479 LGTGIGKD-FNIDKIRYHKIIIMADADVDGSHIRTLLLTFFFRYMPQIIEEGYVYLAMPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY I+  K   YV ++E  +  L        +        G +    L         +D 
Sbjct: 538 LYKISYNKKEWYVYNDEERDQVLKEIGKENNVAVQRYKGLGEMDGTQLWET-----TMDP 592

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +          IE   I      E  +     +  
Sbjct: 593 ARRKMMRVTLPDAIEADRIFSTLMGEEVEPRRQFIEE 629



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    KL   +  +     K ++        ++      V    +    
Sbjct: 455 MLNVEKTRIDKVMNNEKLQPIIASLGTGIGKDFNIDKIRYHKIIIMADADVDGSHIRTLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRY 739
             F F    + I    +      +  +  N  +  +         +  IG+   +++QRY
Sbjct: 515 LTFFFRYMPQIIEEGYVYLAMPPLYKISYNKKEWYVYNDEERDQVLKEIGKENNVAVQRY 574

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEM+ +QLWETT++P  R ++RV + DA +AD +FS LMG+EVEPRR+FI+EN++ +
Sbjct: 575 KGLGEMDGTQLWETTMDPARRKMMRVTLPDAIEADRIFSTLMGEEVEPRRQFIEENAVYA 634

Query: 800 ALDI 803
            LD+
Sbjct: 635 NLDV 638


>gi|228470217|ref|ZP_04055124.1| DNA gyrase, B subunit [Porphyromonas uenonis 60-3]
 gi|228308168|gb|EEK17031.1| DNA gyrase, B subunit [Porphyromonas uenonis 60-3]
          Length = 657

 Score =  603 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 288/587 (49%), Positives = 385/587 (65%), Gaps = 18/587 (3%)

Query: 1   MSDNIQ--------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           MS+  +          +Y A SIQ+L+GL+AV+KRP+MYIGD   E GLHH++YEV+DN+
Sbjct: 1   MSEQEKDIKTAPQDKGAYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNS 59

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L GY   + V +  D S  V+DNGRGIP D+H +EG SA EV+MT LHAGGKF++ 
Sbjct: 60  IDEALAGYCTEVLVEILPDNSIQVTDNGRGIPVDMHAKEGKSALEVVMTVLHAGGKFDKG 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVS VNALS  L   + R+G IY   +  G     + V G A  DTGT 
Sbjct: 120 SYKVSGGLHGVGVSCVNALSESLIAEVHRDGKIYRQKYSRGKPLTGVEVVGEAS-DTGTR 178

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGG 228
           +TF P   IF    ++ DTL HRLRELS+LN+ + + LID R  +    P+  T + + G
Sbjct: 179 ITFKPDDTIFRETIYSSDTLSHRLRELSYLNAGLHLKLIDHRVHDEEGQPKSWTFYSEDG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +  FV Y+D  K+ L+   I     +  + +++A+ +N  Y ENV  + N+I   +GGTH
Sbjct: 239 LSEFVRYVDGAKESLIHDVIHHTTEKQGVPVEVALTYNTSYQENVYTYVNDIHTIEGGTH 298

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R  LTR +  Y   S    K K  + GDD REG T+++S+K+ +P+F  QTK KL 
Sbjct: 299 LTGFRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLG 358

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SE+ SVV++ V++ L  +LEEHPLEAK+IV KV+ A+  R AARRAR+L +RK  L   
Sbjct: 359 NSEIVSVVDAAVSEALEIYLEEHPLEAKLIVDKVILAAQARHAARRARELVQRKSPLTGG 418

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCS +DP + ELF+VEGDSAGG+AKQGR  + QAILPLRGKILNVE+A   ++
Sbjct: 419 GLPGKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKAMQHRI 478

Query: 469 LSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           L + EI  + TALG  +G +        +KLRYHKIIIMTDADVDGAHI TL+LTFFFR 
Sbjct: 479 LDNAEIKNIYTALGVTVGTEEDSKALNLSKLRYHKIIIMTDADVDGAHIATLILTFFFRN 538

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           M  LI NG++YI  PPLY   + +  +Y   ++   +++      +E
Sbjct: 539 MRPLIENGYVYIANPPLYLCKKDRIEEYCWTDDEKANFVTKYGNGQE 585



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 54/69 (78%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           I +QRYKGLGEMN  QLW+TT+NP TR+L +V I + + AD +FS LM ++VEPRREFI+
Sbjct: 588 IKIQRYKGLGEMNDIQLWDTTMNPQTRTLRKVTIDNLASADSVFSMLMSEDVEPRREFIE 647

Query: 794 ENSLPSALD 802
           EN+  + +D
Sbjct: 648 ENATYANID 656


>gi|289804021|ref|ZP_06534650.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 624

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 298/625 (47%), Positives = 410/625 (65%), Gaps = 10/625 (1%)

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +
Sbjct: 2   FEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPN 59

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                  +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K
Sbjct: 60  IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 119

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS 
Sbjct: 120 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSE 179

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  SE
Sbjct: 180 YLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 239

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG
Sbjct: 240 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 299

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + +
Sbjct: 300 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 359

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK  QY+KD+E+++ Y I+ +L             +S   L   + +     K+I     
Sbjct: 360 GKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRMER 419

Query: 607 NHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSINN 659
              K  +++ V           D++      + L   LN   +     K +   +   N 
Sbjct: 420 RFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQNL 479

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            + +V+    GV   + L+   +     +       ++         +     +  +T  
Sbjct: 480 FEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTSF 539

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
              L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+ 
Sbjct: 540 EQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFTT 599

Query: 780 LMGDEVEPRREFIQENSLP-SALDI 803
           LMGD VEPRR FI+EN+L  + +DI
Sbjct: 600 LMGDAVEPRRAFIEENALKAANIDI 624


>gi|73747960|ref|YP_307199.1| DNA gyrase, subunit B [Dehalococcoides sp. CBDB1]
 gi|147668656|ref|YP_001213474.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1]
 gi|73659676|emb|CAI82283.1| DNA gyrase, subunit B [Dehalococcoides sp. CBDB1]
 gi|146269604|gb|ABQ16596.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1]
          Length = 642

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 285/584 (48%), Positives = 392/584 (67%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + +Y A  IQ+L+GL AV+KRP MYIG TD + GLHH++YE++ N++DE++ G  D I 
Sbjct: 12  NSETYTASDIQVLEGLAAVRKRPGMYIGSTD-QRGLHHLVYEIVYNSVDEAMAGVCDRIK 70

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V +  DGS +V DNGRGIP D+H    ISA E +MT LHAG KF  K+Y+VSGGLHGVG 
Sbjct: 71  VIMFKDGSVSVEDNGRGIPVDIHSTTKISALETVMTVLHAGAKFGGKTYQVSGGLHGVGA 130

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS W  ++++R G IY+ S++ G    PL   G     +GT   F+  S IFS  
Sbjct: 131 SVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFMADSQIFSTT 189

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +++++TL  RLRE+++LN  +++ + D++S + R      +GGI  FV +L+R+++   +
Sbjct: 190 EYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERTYYF--EGGITGFVRHLNRNREVRHR 247

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI I    D+  +++A+++NDGY ++ L F N +   DGGTHL+G RSALTR    Y  
Sbjct: 248 QPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTVDGGTHLTGFRSALTRAFNDYAH 307

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           KS   K    +++GDD REG  +++S+K+P+P+F  QTK KL + E++S VES V + LS
Sbjct: 308 KSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVAEQLS 367

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEEHP + K I++K + A+  R+AAR+ARDL  RK  LD  +LPGKLADCSERD    
Sbjct: 368 LYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLC 427

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A  DKML+ +EI  +ITAL  GI
Sbjct: 428 ELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGI 487

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             + FD +KLRY+++++MTDADVDG+HIRTLLLTFFFR MP LI    L+I +PPLY I 
Sbjct: 488 -DNDFDPSKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIK 546

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            G +  +V ++   E  L     ++         G +S   L  
Sbjct: 547 IGSTEHWVYNDAEKEAILAQTKSTKVDIQRYKGLGEMSAEQLWR 590



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 3/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++   +  +A   +  +  S    + LV      V    +    
Sbjct: 459 ILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPSKLRYNRLVLMTDADVDGSHIRTLL 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRY 739
             F F    + I  + +      +  +     +  +       + I +  +   + +QRY
Sbjct: 519 LTFFFRHMPRLITESHLFIAQPPLYKIKIGSTEHWVYNDAE-KEAILAQTKSTKVDIQRY 577

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEM+A QLW TT++P +R+LL VK+ DA++AD +F+ LMG EV PR+ FIQ +S   
Sbjct: 578 KGLGEMSAEQLWRTTMDPASRTLLEVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSRTV 637

Query: 800 -ALDI 803
             LDI
Sbjct: 638 KNLDI 642


>gi|134297887|ref|YP_001111383.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1]
 gi|134050587|gb|ABO48558.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1]
          Length = 638

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 307/589 (52%), Positives = 407/589 (69%), Gaps = 3/589 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M    QN+ Y AD IQ+L+GL+AV++RP MYIG T    GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MDQQQQNNKYSADQIQVLEGLEAVRRRPGMYIGSTSA-RGLHHLVYEVVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+  D S TV DNGRGIP DLH + G  A EV++T LHAGGKF    YKVSGGL
Sbjct: 60  CDKIIVTIQEDNSITVEDNGRGIPVDLHPKVGRPAVEVVLTMLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L + IKR G IY+  +  GI    L + G++   TGT+VTF P  +
Sbjct: 120 HGVGVSVVNALSKYLSVEIKRNGKIYKQEYSRGIPTTELQIVGNSK-TTGTKVTFKPDEE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+ +TL  R+REL++LN  ++I L DKR     E    Y GGI+ FV +L+R+K
Sbjct: 179 IFEELVFSLETLSQRIRELAYLNKGIKIILQDKRKDPVAEQIFQYDGGIKDFVKHLNRNK 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +   PI + G ++ I +++A+++NDGY EN+L + NNI   DGGTH  GL++ALTR I
Sbjct: 239 QTIHTKPIYVSGEKEQIVVEVAIQYNDGYTENMLSYANNIHTVDGGTHEVGLKTALTRVI 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K +  ++ G+D REG T V+S+K+P+P+F  QTK KL +SEVR +V+S  
Sbjct: 299 NDYGRQHGVLKNNDANLSGEDIREGATIVISVKVPEPQFEGQTKTKLGNSEVRGIVDSIF 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + LS +L E+P  AK I++K + A+  R+AAR+AR+LTRRK  L+  SLPGKLADCSE+
Sbjct: 359 AEKLSTYLVENPSVAKKIIEKGITAARAREAARKARELTRRKSALETMSLPGKLADCSEK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+L+++EI  +ITA
Sbjct: 419 DPSVSEIYLVEGDSAGGSAKQGRERRFQAILPLKGKILNVEKARMDKILANEEIRAMITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG+D FDI K RYHKI+IMTDADVDGAHIRTLL+TFF+R M  LI  G++++ +PP
Sbjct: 479 MGTGIGED-FDIAKARYHKIVIMTDADVDGAHIRTLLMTFFYRYMRQLIEAGYVFVAQPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY + +GK   Y   +  LE+ L                G ++   L  
Sbjct: 538 LYRVRKGKHDSYCYSDNELEELLNRIGHDRVNIQRYKGLGEMNPEQLWE 586



 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +     + +  +      +V      V    +    
Sbjct: 455 ILNVEKARMDKILANEEIRAMITAMGTGIGEDFDIAKARYHKIVIMTDADVDGAHIRTLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +    + I +  +      +  +              L + +  IG   +++QRYK
Sbjct: 515 MTFFYRYMRQLIEAGYVFVAQPPLYRVRKGKHDSYCYSDNELEELLNRIGHDRVNIQRYK 574

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT++PDTR++L+V + DA +AD  FS LMGD VEPRR+FIQEN+    
Sbjct: 575 GLGEMNPEQLWETTMDPDTRTMLQVTLEDAIEADATFSMLMGDRVEPRRDFIQENAKYVR 634

Query: 800 ALDI 803
            LDI
Sbjct: 635 NLDI 638


>gi|325856512|ref|ZP_08172201.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A]
 gi|327313062|ref|YP_004328499.1| DNA gyrase subunit B [Prevotella denticola F0289]
 gi|325483481|gb|EGC86454.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A]
 gi|326945170|gb|AEA21055.1| DNA gyrase, B subunit [Prevotella denticola F0289]
          Length = 657

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 279/650 (42%), Positives = 398/650 (61%), Gaps = 16/650 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N +N ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAENQENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV D+GRGIP D HK+   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCKNIEVTINEDNSVTVEDDGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +K ++ R+G IY+  +  G    P+ V G     TGT   F P +
Sbjct: 120 LHGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGETE-KTGTRQQFWPDA 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235
            IF+   F +D +  R+REL++LN+ ++I+L D R    + + R      K G++ FV Y
Sbjct: 179 GIFTTTVFQWDIVARRMRELAYLNAGIRITLSDLRPDPETGKTRTEVFHAKDGLKEFVRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +DRH++ L    I ++  +  I I++A+ +N  Y EN+  + NNI   +GGTHL G R+A
Sbjct: 239 VDRHRQHLFDDVIYLKTEKQGIPIEVAVMYNTDYTENIHSYVNNINTIEGGTHLQGFRAA 298

Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LTR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SE
Sbjct: 299 LTRTLKAYADSDPQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSE 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+  V + L+ +LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK V+    LP
Sbjct: 359 VSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ +  ++  +
Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478

Query: 472 QEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + +  +I ++G   G +       + +KLRY KIIIMTDADVDG+HI TL++T F+R MP
Sbjct: 479 ESVMNIIQSIGVRFGVEDEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            +I  G LYI  PPLY  T  K  +Y   ++  + +L       E      ++      +
Sbjct: 539 KVIEQGHLYIATPPLYKCTYKKVSEYCYTDQQRQAFLDKYGNGVEDGKTIHTQRYKGLGE 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           +         +D   +       +   +   I  +   +  +     +  
Sbjct: 599 MNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEK 648



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 56/71 (78%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I  QRYKGLGEMN  QLWETT++P TR L +V I +A+ AD++FS LMGD+VEPRREF
Sbjct: 586 KTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREF 645

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 646 IEKNATYANID 656


>gi|311032261|ref|ZP_07710351.1| DNA gyrase subunit B [Bacillus sp. m3-13]
          Length = 636

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 301/587 (51%), Positives = 411/587 (70%), Gaps = 5/587 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +Q +SYD  +IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY   I
Sbjct: 1   MQENSYDESNIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGYCSEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF    YKVSGGLHGVG
Sbjct: 60  NVIVEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALSS LK+ + R+G I+   F  G+ +  L + G   + TGT + F+P  +IF+ 
Sbjct: 120 ASVVNALSSELKIYVHRDGKIHYQQFNKGVPNEDLKIIGET-DVTGTIIHFVPDEEIFTE 178

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              ++YDTL HRLREL+FLN  ++I++ DKR   P++    Y+GGI ++V +L+R K+ +
Sbjct: 179 TKEYDYDTLAHRLRELAFLNKGIRITIEDKREETPKKNEYHYEGGIASYVEHLNRTKEVI 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            +  + ++G +D ISI++A+++ND Y  N+  F NNI   +GGTH SG ++ALTR I  Y
Sbjct: 239 HEEVVFVEGEKDGISIEVALQYNDSYTSNLYSFANNISTYEGGTHESGFKTALTRVINDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R+V +S   + 
Sbjct: 299 ARKNNIFKDADSNLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEARTVTDSVFTEK 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
              +L E+P  A+ IV+K L AS  R AA++AR+LTRRK  L+I+SLPGKLADCS +DP 
Sbjct: 359 FEGFLLENPSAARKIVEKGLMASRARMAAKKARELTRRKSALEISSLPGKLADCSSKDPS 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+LS+ E+  +ITALGT
Sbjct: 419 ISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAIITALGT 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D FDI++ RYHKI+IMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPLY 
Sbjct: 479 GIGED-FDISRARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           I +GK ++Y  ++  LE+ L   S   +         G ++   L  
Sbjct: 538 IQQGKKIEYAYNDRQLEEILATMSDQPKAGIQRYKGLGEMNPEQLWE 584



 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 115/628 (18%), Positives = 198/628 (31%), Gaps = 70/628 (11%)

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ----GSRDNISIDLAMRWNDGYHENV 273
              +       I+  ++        +++    I     G    + I   M          
Sbjct: 37  HHLVWEIVDNSIDEALAGYCSEINVIVEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMT 96

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           +          G     GL       + +   +          +      +G  +     
Sbjct: 97  VLHAGGKFGGGGYKVSGGLHGVGASVVNALSSELKIYVHRDGKIHYQQFNKGVPNEDLKI 156

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +   +      +   E+ +  + +  D L+  L E     K I          R    
Sbjct: 157 IGETDVTGTIIHFVPDEEIFTETKEYDYDTLAHRLRELAFLNKGI----------RITIE 206

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPK--KSELFLVEGDSAGGS---AKQGRSRENQ 448
             R+ T +K             +   R  +    E+  VEG+  G S   A Q       
Sbjct: 207 DKREETPKKNEYHYEGGIASYVEHLNRTKEVIHEEVVFVEGEKDGISIEVALQYNDSYTS 266

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            +                   ++           +G       +      K  I  DAD 
Sbjct: 267 NLY----------------SFANNISTYEGGTHESGFKTALTRVINDYARKNNIFKDADS 310

Query: 509 D--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLE 560
           +  G  +R  L      + P     G           +     +   K   ++ +  S  
Sbjct: 311 NLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEARTVTDSVFTEKFEGFLLENPSAA 370

Query: 561 DYLINQSLSEEIELFCDSKG--------VISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
             ++ + L          K          +  + L   + D    D  I + Y     + 
Sbjct: 371 RKIVEKGLMASRARMAAKKARELTRRKSALEISSLPGKLADCSSKDPSISEIYVVEGDSA 430

Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILVKR 666
              A      + ++   +   + +    RL+ I   +E          G   + DI   R
Sbjct: 431 GGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAIITALGTGIGEDFDISRAR 490

Query: 667 IARGVQ-EQFVLEGSSIFS----FGSKYKR-IFSNRIEENYLTILSLICNGDKIKITG-- 718
             + V      ++G+ I +    F  +Y R I  +         L  I  G KI+     
Sbjct: 491 YHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLYKIQQGKKIEYAYND 550

Query: 719 --PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                +L T+    + G  +QRYKGLGEMN  QLWETT++P +R+LL+V + DA +AD+ 
Sbjct: 551 RQLEEILATMSDQPKAG--IQRYKGLGEMNPEQLWETTMDPVSRTLLQVSLQDAIEADET 608

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F  LMGD+VEPRR FIQ+N+     LDI
Sbjct: 609 FEILMGDKVEPRRNFIQDNARYVKNLDI 636


>gi|57233676|ref|YP_180759.1| DNA gyrase, B subunit [Dehalococcoides ethenogenes 195]
 gi|57224124|gb|AAW39181.1| DNA gyrase, B subunit [Dehalococcoides ethenogenes 195]
          Length = 642

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 284/584 (48%), Positives = 390/584 (66%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
              +Y+A  IQ+L+GL AV+KRP MYIG TD + GLHH++YE++ N++DE++ G  D I 
Sbjct: 12  NAENYNASDIQVLEGLAAVRKRPGMYIGSTD-QRGLHHLVYEIVYNSVDEAMAGVCDRIK 70

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V +  DGS +V DNGRGIP D+H    ISA E +MT LHAG KF  K+Y+VSGGLHGVG 
Sbjct: 71  VIIYKDGSVSVEDNGRGIPIDIHPVTKISALETVMTVLHAGAKFGGKTYQVSGGLHGVGA 130

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNAL+ W  ++++R G IY+ S+  G    PL   G   + +GT   F   S IFS  
Sbjct: 131 SVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEVG-VSDGSGTTTIFKADSQIFSTT 189

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +++++TL  RLRE+++LN  +++ + D++S + R      +GGI  FV +L+R+++   +
Sbjct: 190 EYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERTYYF--EGGITGFVRHLNRNREVRHR 247

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI I    D+  +++A+++NDGY ++ L F N +   DGGTHL+G RSALTR    Y  
Sbjct: 248 QPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTIDGGTHLTGFRSALTRAFNDYAH 307

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           KS   K    +++GDD REG  +++S+K+P+P+F  QTK KL + E++S VES V + LS
Sbjct: 308 KSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVTEQLS 367

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEEHP + K I++K + A+  R+AAR+ARDL  RK  LD  +LPGKLADCSERD    
Sbjct: 368 LYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLC 427

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A  DKML+ +EI  +ITAL  GI
Sbjct: 428 ELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGI 487

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             + FD  KLRY+++++MTDADVDG+HIRTLLLTFFFR MP LI    L+I +PPLY I 
Sbjct: 488 -DNDFDPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIK 546

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            G +  +V ++   E  L     ++         G +S   L  
Sbjct: 547 IGSNEHWVYNDAEKETLLSQTKSNKVDIQRYKGLGEMSAEQLWK 590



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 3/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++   +  +A   +  +  +    + LV      V    +    
Sbjct: 459 ILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPAKLRYNRLVLMTDADVDGSHIRTLL 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRY 739
             F F    + I  + +      +  +    ++  +       +T+ S  +   + +QRY
Sbjct: 519 LTFFFRHMPRLITESHLFIAQPPLYKIKIGSNEHWVYNDAE-KETLLSQTKSNKVDIQRY 577

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEM+A QLW+TT++P +R+LL VK+ DA++AD +F+ LMG EV PR+ FIQ +S   
Sbjct: 578 KGLGEMSAEQLWKTTMDPASRTLLEVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSKTV 637

Query: 800 -ALDI 803
             LDI
Sbjct: 638 KNLDI 642


>gi|261415262|ref|YP_003248945.1| DNA gyrase, B subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371718|gb|ACX74463.1| DNA gyrase, B subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 646

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 284/652 (43%), Positives = 397/652 (60%), Gaps = 15/652 (2%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +      + Y   SI +L+GL+AV+ RP+MYIG TD   GLHH+++EV+DN++DE
Sbjct: 1   MAEETEEVKKAEADYSGSSITVLEGLEAVRVRPAMYIGSTD-IRGLHHLVWEVVDNSVDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+ + I +++       V+DNGRGIPTD+H +E +   +V+MT+LHAGGKFN  SYK
Sbjct: 60  ALAGFCNHIEISILPGNGIRVTDNGRGIPTDIHPKEKVGTIQVVMTKLHAGGKFNNSSYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VS GLHGVGVS VNALS+ L + ++R G +    F  G+   P V  G +   TGT V F
Sbjct: 120 VSAGLHGVGVSCVNALSNKLIVTVRRNGRVVRQEFARGVPCGPQVDIGESDGTTGTSVEF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-ITMFYKGGIEAFVS 234
            P   IFS   + YDTL  R REL+FL S ++++L D+R PE ++  T  + GG+  FV 
Sbjct: 180 YPDDTIFSETVYVYDTLATRFRELAFLMSGLRLTLTDERDPEHKQTDTFCFPGGVSEFVR 239

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y+D H+ PL   PI +        +++AM +NDGY EN   F NN+   DGGTH++G ++
Sbjct: 240 YVDEHRTPLFAEPIHLVLPDGQYPLEVAMWYNDGYQENFFSFVNNVNTYDGGTHVTGFKT 299

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I+ + +      K +  +  DD REG T+V++IK+  P+F  QTK KL +SE+  
Sbjct: 300 ALTRVISKFAQDM-PKGKKEAQITSDDIREGLTAVIAIKVSQPQFEGQTKRKLGNSEIAG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V S     L  + +E+P   KII+ KV +A++ R+AA RAR L RRK VL+   LPGKL
Sbjct: 359 YVASAFGAKLEEYFQENPAAVKIILDKVYNAAVAREAAHRARTLARRKNVLESGGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS RDPK+ E+F+VEGDSAGGSAK GRSRE QAILP+RGKILNVE+A   ++L ++EI
Sbjct: 419 ADCSSRDPKECEMFIVEGDSAGGSAKMGRSREFQAILPIRGKILNVEKASLHRVLDTEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L+ A+GTGIG   F I KLRY KIIIMTDADVDG+HI+TLLLTFFFR M  LI  G +
Sbjct: 479 QNLVNAIGTGIG-TEFKIEKLRYDKIIIMTDADVDGSHIQTLLLTFFFRYMRPLIDAGHI 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRNFIDD 593
           ++  PPLY +  G+  +Y+ DE   +  +                 G +S   L +    
Sbjct: 538 FLAMPPLYKLKIGQKERYLFDENEKDKVMAEIEDKKNVAITRFKGLGEMSPEQLNDT--- 594

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
              ++   +     H +  +    I  +   E  +     + +     LN +
Sbjct: 595 --TMNPKTRFLKQCHVEDSVLADQIFSMLMGEDVEPRRKFIETNAYKVLNDL 644



 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      V    ++ N +N I       +       D ++      V    +    
Sbjct: 461 ILNVEKASLHRVLDTEEIQNLVNAIGTGIGTEFKIEKLRYDKIIIMTDADVDGSHIQTLL 520

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F F      I +  I      +  L     +  +       D + +    +K +++ R
Sbjct: 521 LTFFFRYMRPLIDAGHIFLAMPPLYKLKIGQKERYLFDENE-KDKVMAEIEDKKNVAITR 579

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +KGLGEM+  QL +TT+NP TR L +  + D+  AD +FS LMG++VEPRR+FI+ N+  
Sbjct: 580 FKGLGEMSPEQLNDTTMNPKTRFLKQCHVEDSVLADQIFSMLMGEDVEPRRKFIETNAYK 639

Query: 799 S--ALDI 803
               LDI
Sbjct: 640 VLNDLDI 646


>gi|288801620|ref|ZP_06407062.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
 gi|288335662|gb|EFC74095.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
          Length = 655

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 278/608 (45%), Positives = 392/608 (64%), Gaps = 21/608 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N +N ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAENPENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV D+GRGIP D+H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCQNIEVTINEDNSITVEDDGRGIPVDMHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +K ++ R+G IY+  +  G    P+ V G   + TGT   F P  
Sbjct: 120 LHGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235
           +IF+   + +  +  R+REL++LN+ ++I+L D R    + + R      K G++ FV Y
Sbjct: 179 EIFTTTVYQWAIVARRMRELAYLNAGIKITLSDLRPDPETGKTRTEVFHAKDGLKEFVRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +DRH++ L    I ++  + NI I++A+ +N  Y EN+  + NNI   +GGTHL G R+A
Sbjct: 239 VDRHRQHLFDDVIYLKTEKQNIPIEVAVMYNTDYTENIHSYVNNINTIEGGTHLQGFRAA 298

Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LTR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SE
Sbjct: 299 LTRTLKTYADNDPQISKQLEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSE 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+  V + L+ +LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK V+    LP
Sbjct: 359 VSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ +  ++  +
Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478

Query: 472 QEIGTLITALGT-----GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + +  +I ++G      G G    + +KLRY KIIIMTDADVDG+HI TL++T F+R MP
Sbjct: 479 ESVMNIIQSIGVRFGVEGEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-----IELFCDSKGV 581
            +I  G LYI  PPLY  T  K  +Y   E+  + ++   +  +E             G 
Sbjct: 539 KVIEQGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYANGDEEDKAIHTQRYKGLGE 598

Query: 582 ISKNDLRN 589
           ++   L  
Sbjct: 599 MNPEQLWE 606



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 53/71 (74%), Gaps = 2/71 (2%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I  QRYKGLGEMN  QLWETT++P TR L +V I +    DD+FS LMGD+VEPRREF
Sbjct: 586 KAIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENDV--DDIFSMLMGDDVEPRREF 643

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 644 IEKNATYANID 654


>gi|260591755|ref|ZP_05857213.1| DNA gyrase, B subunit [Prevotella veroralis F0319]
 gi|260536039|gb|EEX18656.1| DNA gyrase, B subunit [Prevotella veroralis F0319]
          Length = 657

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 280/650 (43%), Positives = 398/650 (61%), Gaps = 16/650 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N +N ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAENQENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV D+GRGIP D HK+   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCQNIEVTINEDNSITVEDDGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +  ++ R+G IY+  +  G    P+ V G     TGT   F P  
Sbjct: 120 LHGVGVSCVNALSTHMMSQVYRDGKIYQQEYEKGKPLYPVKVVGET-QKTGTRQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235
            IF+   + +D +  R+REL++LN+ ++I+L D R    + + R      K G++ FV Y
Sbjct: 179 TIFTTTVYQWDIVARRMRELAYLNAGIKITLTDLRPDPETGKTRTEVFHAKDGLKEFVRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +DRH++ L    I ++  + NI I++A+ +N  Y EN+  + NNI   +GGTHL G R+A
Sbjct: 239 VDRHRQHLFDDVIYLKTEKQNIPIEVAVMYNTDYTENIHSYVNNINTIEGGTHLQGFRAA 298

Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LTR + SY +     S   +K K  + G+D REG T+V++IK+ +P+F  QTK KL +SE
Sbjct: 299 LTRTLKSYADNDPQISKQIEKAKIEIAGEDFREGLTAVIAIKVAEPQFEGQTKTKLGNSE 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+  V + LS +LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK V+    LP
Sbjct: 359 VAGAVQQAVGEALSDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ +  ++  +
Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478

Query: 472 QEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + +  +I ++G   G ++      + +KLRY KIIIMTDADVDG+HI TL++T F+R MP
Sbjct: 479 ESVMNIIQSIGVRFGVENEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            +I  G LYI  PPLY  T  K  +Y   E+  + +L       E      ++      +
Sbjct: 539 KVIEQGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFLDKYGNGVEDGKTIHTQRYKGLGE 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           +         +D   +       +   +   I  +   +  +     +  
Sbjct: 599 MNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEK 648



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 56/71 (78%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I  QRYKGLGEMN  QLWETT++P TR L +V I +A+ AD++FS LMGD+VEPRREF
Sbjct: 586 KTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREF 645

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 646 IEKNATYANID 656


>gi|19705416|ref|NP_602911.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713409|gb|AAL94210.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 639

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 266/592 (44%), Positives = 382/592 (64%), Gaps = 8/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + +   SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY
Sbjct: 1   MEEKM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +  +    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGL
Sbjct: 57  CDKIEVKILPENIIEVMDNGRGIPTDIHPKYGKSAMEIVLTILHAGGKFENDNYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS WL++ +++ G ++   +  G  +  + V GS   ++ GT V F    
Sbjct: 117 HGVGVSVVNALSEWLEVEVRKNGVVHYQKYHRGKPEEDVKVIGSCDESEHGTIVRFKADG 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    +NY TL +RL+EL++LN  + I L D R  E +E T  + GGI  F++ + + 
Sbjct: 177 EIFETLIYNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEETYKFDGGILDFLNEIVKE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
              +++ P  +   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ 
Sbjct: 237 DTTIIEKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I    +     K     ++G+D REG   ++S K+P P+F  QTK KL +SEV  +V + 
Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V+  L  +LE++P   KII++K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ 
Sbjct: 357 VSSSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +  ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++T
Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GT IG+  FDI KLRY KII+MTDADVDGAHIRTL+LTF +R M  LI  G +YI  P
Sbjct: 477 AFGTSIGET-FDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           PLY ++ GK + Y  ++  L++ L   +   +          G ++   L  
Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNILGQMNQDNKKYTIQRYKGLGEMNPEQLWE 587



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 103/266 (38%), Gaps = 9/266 (3%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +    +        +      +             +   FI +        K
Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 437

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                +++  +   +   + N E         +S++   +        +++  +      
Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDIAKLRYGK 495

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPC 720
           ++      V    +   + I +F  +Y +                  +  K  I      
Sbjct: 496 IILMTDADVDGAHI--RTLILTFLYRYMKDLITEGNIYIACPPLYKVSSGKQIIYAYNDL 553

Query: 721 SLLDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            L + +   +   K  ++QRYKGLGEMN  QLWETT+NPD R LL+V I +A +AD LF 
Sbjct: 554 ELKNILGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFD 613

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           +LMGD+VEPRREFI+E++     +DI
Sbjct: 614 KLMGDKVEPRREFIEEHAEYVKNIDI 639


>gi|78185902|ref|YP_373945.1| DNA gyrase, B subunit [Chlorobium luteolum DSM 273]
 gi|78165804|gb|ABB22902.1| DNA gyrase subunit B [Chlorobium luteolum DSM 273]
          Length = 644

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 284/590 (48%), Positives = 399/590 (67%), Gaps = 10/590 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
               S+Y A +IQ+L G+  V+ RP+MYIGD     GLHH+IYE++DN+IDE+L GY D 
Sbjct: 7   QTPQSNYGATNIQVLDGIAHVRMRPAMYIGDIHS-RGLHHLIYEIVDNSIDETLGGYNDY 65

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V+LN DGS TV D+GRGIP D+H ++  SA E++MT + AGGKF++ +YKVSGGLHGV
Sbjct: 66  IFVSLNPDGSVTVIDHGRGIPVDIHPDKKKSALELVMTLIGAGGKFDKGAYKVSGGLHGV 125

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS W ++ + R+G  +   +  G+ +  +   G+      T+ TF+P S+IF 
Sbjct: 126 GASVVNALSEWCEVEVYRDGKAWFQRYHRGVPEADVKEIGTTTERG-TKTTFMPDSEIFK 184

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V +F  D +  R+REL+FLNS+++I +   +  E  + T  ++GG++ FV + D ++  L
Sbjct: 185 VTEFRKDIIIDRMRELAFLNSNLKIVV---QDIEGEQETFHFEGGLKEFVLFTDENRLNL 241

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++ PI I G +D   +++A+ +ND Y ENV  + NNI   +GGTH++G R ALTR + +Y
Sbjct: 242 IKEPIYIYGEKDGTIVEIALEYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAY 301

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K+   K  K ++ GDD +EG T+V+S+K+ +P+F  QTK KL +SE +S+VES +N+ 
Sbjct: 302 AQKNDLLKNLKLALTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESVLNEQ 361

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ + E +P   K+I++KV  A+M R+AAR+A++LTRRK VL+ + LPGKLADCS  DP+
Sbjct: 362 LAEFAESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPE 421

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  KML ++EI T+I ALGT
Sbjct: 422 HCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGT 481

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
             G++ F   KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI  G +YI +PPLY 
Sbjct: 482 NFGEEEFSAEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVYIAQPPLYL 541

Query: 544 ITRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLR 588
           +  GK  QY  D++           + +  +          G ++   L 
Sbjct: 542 VKSGKEQQYAWDDDERNSISDSMKKMQKGKANVHIQRYKGLGEMNPEQLW 591



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E+ +         ++      V    +      F F      I + ++       L L+
Sbjct: 484 GEEEFSAEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVY-IAQPPLYLV 542

Query: 709 CNGDKIKI-------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
            +G + +              +      G+  + +QRYKGLGEMN  QLW TT++P+ RS
Sbjct: 543 KSGKEQQYAWDDDERNSISDSMKK-MQKGKANVHIQRYKGLGEMNPEQLWGTTMDPEHRS 601

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LL+V + +A +AD +FS LMGD+VEPRREFI++N+     LD+
Sbjct: 602 LLQVSVENAMEADKVFSTLMGDKVEPRREFIEKNARYVRRLDV 644


>gi|270307455|ref|YP_003329513.1| DNA gyrase, B subunit [Dehalococcoides sp. VS]
 gi|270153347|gb|ACZ61185.1| DNA gyrase, B subunit [Dehalococcoides sp. VS]
          Length = 642

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 283/584 (48%), Positives = 389/584 (66%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + +Y A  IQ+L+GL AV+KRP MYIG TD + GLHH++YE++ N++DE++ G  D I 
Sbjct: 12  NSENYTASDIQVLEGLAAVRKRPGMYIGSTD-QRGLHHLVYEIVYNSVDEAMAGVCDRIK 70

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V +  DGS +V DNGRGIP D+H    ISA E +MT LHAG KF  K+Y+VSGGLHGVG 
Sbjct: 71  VIMFKDGSVSVEDNGRGIPVDIHPVTKISALETVMTVLHAGAKFGGKTYQVSGGLHGVGA 130

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNAL+ W  ++++R G IY+ S+  G    PL   G   + +GT   F   S IFS  
Sbjct: 131 SVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEIG-VSDGSGTTTIFKADSQIFSTT 189

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +++++ L  RLRE+++LN  +++ + D++S + R      +GGI  FV +L+R+++   +
Sbjct: 190 EYDFEILTDRLREIAYLNKGLEVYIYDEQSDQERTYYF--EGGITGFVRHLNRNREVRHR 247

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI I    D+  +++A+++NDGY ++ L F N +   DGGTHL+G RSALTR    Y  
Sbjct: 248 QPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTIDGGTHLTGFRSALTRAFNDYAH 307

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           KS   K    +++GDD REG  +++S+K+P+P+F  QTK KL + E++S VES V + LS
Sbjct: 308 KSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVAEQLS 367

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEEHP + K I++K + A+  R+AAR+ARDL  RK  LD  +LPGKLADCSERD    
Sbjct: 368 LYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLC 427

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A  DKML+ +EI  +ITAL  GI
Sbjct: 428 ELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGI 487

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             + FD  KLRY+++++MTDADVDG+HIRTLLLTFFFR MP LI    L+I +PPLY I 
Sbjct: 488 -DNDFDPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIK 546

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            G +  +V ++   E  L     ++         G +S   L  
Sbjct: 547 IGSTEHWVYNDAEKETLLSQTKSTKVDIQRYKGLGEMSAEQLWR 590



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++   +  +A   +  +  +    + LV      V    +    
Sbjct: 459 ILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPAKLRYNRLVLMTDADVDGSHIRTLL 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRY 739
             F F    + I  + +      +  +     +  +       +T+ S  +   + +QRY
Sbjct: 519 LTFFFRHMPRLITESHLFIAQPPLYKIKIGSTEHWVYNDAE-KETLLSQTKSTKVDIQRY 577

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEM+A QLW TT++P +R+LL VK+ DA++AD +F+ LMG EV PR+ FIQ +S   
Sbjct: 578 KGLGEMSAEQLWRTTMDPASRTLLEVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSRTV 637

Query: 800 -ALDI 803
             LDI
Sbjct: 638 KNLDI 642


>gi|87301672|ref|ZP_01084512.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 5701]
 gi|87283889|gb|EAQ75843.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 5701]
          Length = 652

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 291/654 (44%), Positives = 401/654 (61%), Gaps = 17/654 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD  +   +Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MSDASKIQHAYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V L  DGS  ++DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDEILVRLCEDGSAEITDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS W+++ ++R+G ++   F  G     L         TGT V F P  
Sbjct: 120 LHGVGISVVNALSEWVEVTVRRQGQVHRQRFERGTPIGSLRSEDDPSGATGTAVRFKPDI 179

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAF 232
           +IFS   DF+Y TL  RLREL++LN  V+I   D+R         P E    Y+GGI  +
Sbjct: 180 EIFSGGIDFDYATLSGRLRELAYLNGGVRIVFRDEREAAKGSDGSPHEEIYHYEGGIREY 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSG 291
           V+Y++  K PL    I +  S+D + ++ A++W  D Y +++L F NNI   DGGTH+ G
Sbjct: 240 VTYMNAGKDPLHPDIIYVNASKDGVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           L++ LTR + ++ +K    K    ++ G++ REG T+VLS+K+PDP F  QTK KL ++E
Sbjct: 300 LKTVLTRTLNTFAKKRGKRKDTDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTE 359

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR +V+S V + L  +LE HP    +I++K + A    +AARRAR+L RRK VL+ ++LP
Sbjct: 360 VRGIVDSVVGEALGEFLEFHPQVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLP 419

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  +
Sbjct: 420 GKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKN 479

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            EI  LIT LG GI  + F+++ LRYH+I+IMTDADVDGAHIRTLLLTFF+R   +L+  
Sbjct: 480 TEIQALITGLGLGIKGEEFNLSALRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKTLLEG 539

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590
           G++YI  PPLY + RGK+  Y  +E+ L+  L                 G +    L   
Sbjct: 540 GYIYIACPPLYKVERGKNHTYCYNEQDLKKTLDGFGEKANYTIQRFKGLGEMMPKQLWET 599

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                 +D   +       +   E   I  +   +             +  L+F
Sbjct: 600 -----TMDPTTRTMKRVEIEDAAEADRIFTILMGDKV-APRREFIETHSAELDF 647



 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 131/328 (39%), Gaps = 31/328 (9%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561
           TD+++ G +IR  L      ++P     G     +    + GI      + + +      
Sbjct: 321 TDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSVVGEALGEFLEFHP 380

Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616
            +I+  L + I+ F  ++      +L  R  + ++  +   + D         + +I + 
Sbjct: 381 QVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEG 440

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDI 662
             +G    +       ++       LN       K +  +                  ++
Sbjct: 441 DSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITGLGLGIKGEEFNL 500

Query: 663 LVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNGDKIK- 715
              R  R V      ++G+ I +    +   +   + E          L  +  G     
Sbjct: 501 SALRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKTLLEGGYIYIACPPLYKVERGKNHTY 560

Query: 716 ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                 L  T+   G K   ++QR+KGLGEM   QLWETT++P TR++ RV+I DA++AD
Sbjct: 561 CYNEQDLKKTLDGFGEKANYTIQRFKGLGEMMPKQLWETTMDPTTRTMKRVEIEDAAEAD 620

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALD 802
            +F+ LMGD+V PRREFI+ +   + LD
Sbjct: 621 RIFTILMGDKVAPRREFIETH--SAELD 646


>gi|327404490|ref|YP_004345328.1| DNA gyrase subunit B [Fluviicola taffensis DSM 16823]
 gi|327319998|gb|AEA44490.1| DNA gyrase subunit B [Fluviicola taffensis DSM 16823]
          Length = 650

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 288/601 (47%), Positives = 390/601 (64%), Gaps = 14/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +N  Y AD+IQ+L+GL+AV+KRP+MYIGD  G  GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MSEEKKNQDYSADNIQVLEGLEAVRKRPAMYIGDI-GIKGLHHLVYEVVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N D S TV DNGRGIPT + K+EG SA E++MT LHAGGKF++ +YKVSGGL
Sbjct: 60  CDTIGVWINEDNSITVKDNGRGIPTGITKKEGKSALEIVMTVLHAGGKFDKDTYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS  L   + R+G I+E  +  G     +   G++ +  GTEVTF P   
Sbjct: 120 HGVGVSCVNALSIHLHAVVHRDGKIFEQEYQIGKPLYEVREIGNS-DKHGTEVTFKPDGT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFVSYL 236
           IF   ++NYDTL  R+REL+FLN  + I++ D      +  P       +GG+  F  YL
Sbjct: 179 IFENTEYNYDTLCARMRELAFLNKGITITMTDLRELDDNGNPTSTIFHSEGGLREFAQYL 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+++PL+   I  +G R+ I +++A+ +N  Y EN+  + NNI   +GGTHLSG R  L
Sbjct: 239 DRNREPLVADVIYFEGEREGIPVEVALTYNTSYTENIQAYVNNINTHEGGTHLSGFRRGL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T  +  Y   S    ++K  + GDD REG T+V+S+K+ +P+F  QTK KL + EV + V
Sbjct: 299 TNTLKKYATDSGMLAREKIEIDGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNREVTAPV 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
              V++ LS +LEEHP EAKIIV KV+ A+  R AAR+AR++ +RK V+  + LPGKLAD
Sbjct: 359 SQAVSEMLSIYLEEHPNEAKIIVDKVILAARARHAARKAREMVQRKNVMTGSGLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CSE+DP   E++ VEGDSAGG+AKQGR R  QAI+PLRGKILNVE+A   K+  ++EI  
Sbjct: 419 CSEKDPSLCEIYFVEGDSAGGTAKQGRDRHFQAIMPLRGKILNVEKAMHHKIFENEEIKN 478

Query: 477 LITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           + TALG  IG +      +I KLRYHKIIIM DADVDG+HI TL+LTFFFR M  LI  G
Sbjct: 479 MYTALGVRIGTEEDSKALNIEKLRYHKIIIMCDADVDGSHIETLILTFFFRFMKELIELG 538

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKNDLR 588
           ++YI  PPLY + +G    Y  +E+  +  +                    G ++   L 
Sbjct: 539 YIYIATPPLYQVKKGAKSDYAWNEDQRDILINQLKGGGADSSVNVQRYKGLGEMNAEQLW 598

Query: 589 N 589
           +
Sbjct: 599 D 599



 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                          +E+A+   +F  E  + +  +L  ++    +  A   EK  +  I
Sbjct: 447 RHFQAIMPLRGKILNVEKAMHHKIFENEEIKNMYTALGVRIGTEEDSKALNIEKLRYHKI 506

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
               I++            L  +  F F  +   +    I       L  +  G K    
Sbjct: 507 ----IIMCDADVDGSHIETLILTFFFRFMKELIELGYIYIA---TPPLYQVKKGAKSDYA 559

Query: 718 GPCSLLDTIFSIGRKG-----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
                 D + +  + G     +++QRYKGLGEMNA QLW+TT+NP+ R+L +V I +A++
Sbjct: 560 WNEDQRDILINQLKGGGADSSVNVQRYKGLGEMNAEQLWDTTMNPEYRTLRQVTIENAAE 619

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            D +FS LMGDEV PRREFI++N+  + +DI
Sbjct: 620 CDQIFSMLMGDEVPPRREFIEKNAKYAKIDI 650


>gi|289422479|ref|ZP_06424322.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157051|gb|EFD05673.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L]
          Length = 635

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 292/585 (49%), Positives = 393/585 (67%), Gaps = 2/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L G    I
Sbjct: 1   MSKQEYGADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGNCSEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            ++LN DGS TV DNGRGIP ++H + G+S  E ++T LHAGGKF    YKVSGGLHGVG
Sbjct: 60  YISLNDDGSVTVRDNGRGIPVEVHPKTGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS W+   + R+G +Y   +  G+    L V      ++GT +TF+P + IF  
Sbjct: 120 VSVVNALSDWVVAEVSRDGKLYRQRYEKGVTKTKLEVVDENQKESGTSITFMPDASIFDE 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y+TL++R RELSFLN  ++I   DKR  + +  T  Y GG+  +V YL+R K  L 
Sbjct: 180 VVFSYETLEYRFRELSFLNRVIKIVFDDKRKGQEKSKTFHYTGGLIEYVKYLNRTKNTLH 239

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I +   +D+ +I+LA+++ D Y EN+  F NNI   +GG HLSG ++ALT+ +  Y 
Sbjct: 240 DQIIYVDKMQDDCTIELALQYTDAYSENIYSFANNINTHEGGVHLSGFKTALTKAMNDYA 299

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            ++   K    ++ G+D REG T+++S+K+P+P+F  QTK KL ++ +R +V+S  N+ +
Sbjct: 300 RRNNILKDKDSNLTGEDIREGITAIVSVKLPEPQFEGQTKTKLGNTFMRGIVDSIANEEI 359

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
            A++EE+P  A++I+ K L +   R+AA++AR+LTRRK VL+  SLPGKLADCSE+ P+K
Sbjct: 360 GAFMEENPSVARVIIDKCLRSQRAREAAKKARELTRRKSVLETTSLPGKLADCSEKSPEK 419

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+FLVEGDSAGGSAK GR R  QAILPLRGKILNVE++R DK+LSS+EI  +ITA G G
Sbjct: 420 SEIFLVEGDSAGGSAKGGRDRNIQAILPLRGKILNVEKSRLDKILSSEEIKNMITAFGCG 479

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG+D FD  KLRYHKIIIMTDADVDGAHIRTLLLTFFFR M  LI  G++Y   PPL+ I
Sbjct: 480 IGED-FDEAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEQGYVYAAMPPLFKI 538

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            + K   Y   +  L   L                G ++ N L  
Sbjct: 539 KKAKKEYYAYTDRELGSLLDEVGRQGTEISRYKGLGEMNANQLWE 583



 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++ N +        + +  +      ++      V    +    
Sbjct: 452 ILNVEKSRLDKILSSEEIKNMITAFGCGIGEDFDEAKLRYHKIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I    +      +  +     +        L   +  +GR+G  + RYK
Sbjct: 512 LTFFFRYMRPLIEQGYVYAAMPPLFKIKKAKKEYYAYTDRELGSLLDEVGRQGTEISRYK 571

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA+QLWETT++P+ R L +V I DA  AD+ FS LMGD+V PRREFI+EN+    
Sbjct: 572 GLGEMNANQLWETTMDPEQRILQQVTIEDAIFADETFSMLMGDKVAPRREFIEENAKYVR 631

Query: 800 ALDI 803
            LDI
Sbjct: 632 NLDI 635


>gi|289431959|ref|YP_003461832.1| DNA gyrase subunit beta [Dehalococcoides sp. GT]
 gi|288945679|gb|ADC73376.1| DNA gyrase, B subunit [Dehalococcoides sp. GT]
          Length = 642

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 284/584 (48%), Positives = 391/584 (66%), Gaps = 5/584 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + +Y A  IQ+L+GL AV+KRP MYIG TD + GLHH++YE++ N++DE++ G  D I 
Sbjct: 12  NSETYTASDIQVLEGLAAVRKRPGMYIGSTD-QRGLHHLVYEIVYNSVDEAMAGVCDRIK 70

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V +  DGS +V DNGRGIP  +H    ISA E +MT LHAG KF  K+Y+VSGGLHGVG 
Sbjct: 71  VIMFKDGSVSVEDNGRGIPVGIHSTTKISALETVMTVLHAGAKFGGKTYQVSGGLHGVGA 130

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS W  ++++R G IY+ S++ G    PL   G     +GT   F+  S IFS  
Sbjct: 131 SVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFMADSQIFSTT 189

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +++++TL  RLRE+++LN  +++ + D++S + R      +GGI  FV +L+R+++   +
Sbjct: 190 EYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERTYYF--EGGITGFVRHLNRNREVRHR 247

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI I    D+  +++A+++NDGY ++ L F N +   DGGTHL+G RSALTR    Y  
Sbjct: 248 QPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTVDGGTHLTGFRSALTRAFNDYAH 307

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           KS   K    +++GDD REG  +++S+K+P+P+F  QTK KL + E++S VES V + LS
Sbjct: 308 KSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVAEQLS 367

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEEHP + K I++K + A+  R+AAR+ARDL  RK  LD  +LPGKLADCSERD    
Sbjct: 368 LYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLC 427

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A  DKML+ +EI  +ITAL  GI
Sbjct: 428 ELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGI 487

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             + FD +KLRY+++++MTDADVDG+HIRTLLLTFFFR MP LI    L+I +PPLY I 
Sbjct: 488 -DNDFDPSKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIK 546

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            G +  +V ++   E  L     ++         G +S   L  
Sbjct: 547 IGSTEHWVYNDAEKEAILAQTKSTKVDIQRYKGLGEMSAEQLWR 590



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 3/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++   +  +A   +  +  S    + LV      V    +    
Sbjct: 459 ILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPSKLRYNRLVLMTDADVDGSHIRTLL 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRY 739
             F F    + I  + +      +  +     +  +       + I +  +   + +QRY
Sbjct: 519 LTFFFRHMPRLITESHLFIAQPPLYKIKIGSTEHWVYNDAE-KEAILAQTKSTKVDIQRY 577

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEM+A QLW TT++P +R+LL VK+ DA++AD +F+ LMG EV PR+ FIQ +S   
Sbjct: 578 KGLGEMSAEQLWRTTMDPASRTLLEVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSRTV 637

Query: 800 -ALDI 803
             LDI
Sbjct: 638 KNLDI 642


>gi|72388565|gb|AAZ67926.1| DNA gyrase subunit B [Psychrobacter fozii]
          Length = 729

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 321/721 (44%), Positives = 438/721 (60%), Gaps = 47/721 (6%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           HM++EV+DN+IDE+L  Y D I + ++ D S +V DNGRG+P D+H EEG+SAA+VIMT 
Sbjct: 3   HMVFEVVDNSIDEALPWYCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTV 62

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+  SYKVSGGLHGVG+SVVNALS  L++ I REG  Y  ++ +G+ D  +   
Sbjct: 63  LHAGGKFDDNSYKVSGGLHGVGISVVNALSKKLEMNIWREGYHYNQTYTDGVPDADIQQ- 121

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             A N TGT++ F PSSD+F+   F YD L  RLRELSFLNS V+I L D+R  +  E  
Sbjct: 122 MEATNQTGTQIRFYPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE-- 179

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             +KGG+  FVSY++  K  + +         D IS+++A++W D Y+E VLCFTNNIPQ
Sbjct: 180 FEHKGGLLEFVSYINAGKDGVNEVFHFTSQQDDGISVEVALQWTDTYNEKVLCFTNNIPQ 239

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           KDGGTHLSG RSALTR + SY+++    KK+K +  GDD REG T+++S+K+PDP+FSSQ
Sbjct: 240 KDGGTHLSGFRSALTRCLNSYMDRENLFKKEKVAATGDDAREGLTAIVSVKVPDPKFSSQ 299

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VES ++D  + +L E+P   K I  K++DA+  RDAAR+AR++TRRK
Sbjct: 300 TKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIASKIIDAARARDAARKAREMTRRK 359

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVER
Sbjct: 360 TTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVER 419

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           ARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFF
Sbjct: 420 ARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFF 479

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           RQ P LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ ++             I
Sbjct: 480 RQTPELIERGYVYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTKLHISADAPAI 539

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLAN 640
           +   L   ++D  +   +            ++    +     +   +     +    +  
Sbjct: 540 TGQALETLLNDYNQTQLIKARLQIRFPAVLLDALTHTPKLTTDMTNDKSAMQAWKDAMQT 599

Query: 641 RLNFIAEK---------------------------------SEKSWHGSI----NNSDIL 663
           +L+                                      +E++  G            
Sbjct: 600 QLDHFGSDLSPEIKLINIHAPQPKNMDAAAADLLGMKPEVVAEETIDGEALSTKAQWLPR 659

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-----DKIKITG 718
           +      +   ++L+ S I S         S        +   +           + +  
Sbjct: 660 ITVYVHQLAHHYLLDASFISSGEYSKLLRLSAEWNTLLESETFIRREATAGTTKNVPVRD 719

Query: 719 P 719
            
Sbjct: 720 F 720


>gi|296328806|ref|ZP_06871320.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154141|gb|EFG94945.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 639

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 267/592 (45%), Positives = 383/592 (64%), Gaps = 8/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +N+   SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY
Sbjct: 1   MEENM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +  +    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGL
Sbjct: 57  CDKIEVKILPENIIEVMDNGRGIPTDIHPKYGKSAMEIVLTILHAGGKFENDNYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS WL++ +++ G ++   +  G  +  + V GS   ++ GT V F    
Sbjct: 117 HGVGVSVVNALSEWLEVEVRKNGVVHYQKYHRGKPEENVKVIGSCDESEHGTIVRFKADG 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    +NY TL +RL+EL++LN  + I L D R  E +E T  + GGI  F++ + + 
Sbjct: 177 EIFETLIYNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEETYKFDGGILDFLNEIVKE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
              +++ P  +   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ 
Sbjct: 237 DTTIIEKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I    +     K     ++G+D REG   ++S K+P P+F  QTK KL +SEV  +V + 
Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V+  L  +LE++P   KII++K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ 
Sbjct: 357 VSSSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +  ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++T
Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GT IG+  FDI KLRY KII+MTDADVDGAHIRTL+LTF +R M  LI  G +YI  P
Sbjct: 477 AFGTSIGET-FDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           PLY ++ GK + Y  ++  L++ L   +   +          G ++   L  
Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNILGQMNQDNKKYTIQRYKGLGEMNPEQLWE 587



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 103/266 (38%), Gaps = 9/266 (3%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I   K  +    +        +      +             +   FI +        K
Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 437

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                +++  +   +   + N E         +S++   +        +++  +      
Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDIAKLRYGK 495

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPC 720
           ++      V    +   + I +F  +Y +                  +  K  I      
Sbjct: 496 IILMTDADVDGAHI--RTLILTFLYRYMKDLITEGNIYIACPPLYKVSSGKQIIYAYNDL 553

Query: 721 SLLDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            L + +   +   K  ++QRYKGLGEMN  QLWETT+NPD R LL+V I +A +AD LF 
Sbjct: 554 ELKNILGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFD 613

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
           +LMGD+VEPRREFI+E++     +DI
Sbjct: 614 KLMGDKVEPRREFIEEHAEYVKNIDI 639


>gi|288800604|ref|ZP_06406062.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332817|gb|EFC71297.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 299 str. F0039]
          Length = 657

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 280/659 (42%), Positives = 388/659 (58%), Gaps = 15/659 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+N    ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++ E +DN+IDE++ G
Sbjct: 1   MSENQNIENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV DNGRGIP D+H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCTDIEVTINEDNSITVQDNGRGIPVDMHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +K ++ R+G IY+  +  G     + V G   N  GT   F P  
Sbjct: 120 LHGVGVSCVNALSTHMKSQVFRDGKIYQQEYEQGKPLYSVKVVGET-NLRGTRQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLID---KRSPEPREITMFYKGGIEAFVSYL 236
            IF+   + +D +  R+REL++LN+ V+I+L D       + R    + + G++AF  Y+
Sbjct: 179 SIFTTTLYKWDIISRRMRELAYLNAGVRITLTDLRLDEEGKIRREEFYAQDGLKAFARYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  ++N+ I++A+ +N  Y EN+  + NNI   +GGTHL+G R AL
Sbjct: 239 DRHRTHLFDDVIYLKTEKNNVPIEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRMAL 298

Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 TRTLKAYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + L+ +LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK  +    LPG
Sbjct: 359 SGAVQQAVGEALADYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMTGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK SE+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+  + K+  S+
Sbjct: 419 KLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYCQAILPLRGKILNVEKVMWHKVFESE 478

Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 SVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LYI  PPLY  +     +     E      I++    + +              
Sbjct: 539 VIQEGHLYIATPPLYLCSYKNKEKEYCYTEQQRQAFIDRHTEGKDDSKSIHVQRYKGLGE 598

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
            N                         +A          D E       + A   N  A
Sbjct: 599 MNPEQLWETTMNPQTRLLKQVTIENAAEADEIFSMLMGDDVEPRREFIEQNATYANIDA 657



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/77 (58%), Positives = 60/77 (77%), Gaps = 3/77 (3%)

Query: 729 IGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
            G+   K I +QRYKGLGEMN  QLWETT+NP TR L +V I +A++AD++FS LMGD+V
Sbjct: 580 EGKDDSKSIHVQRYKGLGEMNPEQLWETTMNPQTRLLKQVTIENAAEADEIFSMLMGDDV 639

Query: 786 EPRREFIQENSLPSALD 802
           EPRREFI++N+  + +D
Sbjct: 640 EPRREFIEQNATYANID 656


>gi|300726297|ref|ZP_07059750.1| DNA gyrase, B subunit [Prevotella bryantii B14]
 gi|299776494|gb|EFI73051.1| DNA gyrase, B subunit [Prevotella bryantii B14]
          Length = 658

 Score =  602 bits (1552), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/660 (42%), Positives = 390/660 (59%), Gaps = 16/660 (2%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N  N  +Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAENQNNEANYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   + VT+N DGS TV DNGRGIP D HK+   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCTDVQVTVNEDGSITVEDNGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +K ++ R+G IY+  +  G    P+ + G   +  GT   F P  
Sbjct: 120 LHGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKIVGET-DKRGTCQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----DKRSPEPREITMFYKGGIEAFVSY 235
            IF+   F +D +  R+REL++LN+ ++I+L     +  + + R+       G++ FV Y
Sbjct: 179 TIFTTTTFQWDIIARRMRELAYLNAGIRITLTDLRPNAETGKTRQEVFHAVEGLKEFVRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +DRH+  L    I ++  +  + I++A+ +N  Y EN+  + NNI   +GGTHL+G R+A
Sbjct: 239 VDRHRTHLFDDVIYLKTEKQGVPIEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRTA 298

Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LTR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SE
Sbjct: 299 LTRTLKAYADNDSAISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSE 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+  V + LS +LEEHP EAK I +KV+ A+  R AAR+AR+  +RK V+    LP
Sbjct: 359 VAGAVQQAVGEALSDYLEEHPSEAKAICEKVILAATARIAARKARESVQRKNVMTGGGLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS +DPK+ E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+  + ++  +
Sbjct: 419 GKLADCSNKDPKQCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVPWHRVFEA 478

Query: 472 QEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T FFR MP
Sbjct: 479 ESVMNIIQSIGVRFGVEGEADREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFFRFMP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            +I  G LYI  PPLY  T    +      +      I++  +   +             
Sbjct: 539 KVIEEGHLYIATPPLYKCTFKNKVSEYCYTDQQRQAFIDKYGNGIDDGKSIHTQRYKGLG 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
             N                         +A  +       D E       + A   N  A
Sbjct: 599 EMNPEQLWETTMDPTSRLLKQVTIEDAAEADETFSMLMGDDVEPRREFIEQNATYANIDA 658



 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 56/71 (78%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I  QRYKGLGEMN  QLWETT++P +R L +V I DA++AD+ FS LMGD+VEPRREF
Sbjct: 587 KSIHTQRYKGLGEMNPEQLWETTMDPTSRLLKQVTIEDAAEADETFSMLMGDDVEPRREF 646

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 647 IEQNATYANID 657


>gi|196249898|ref|ZP_03148594.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16]
 gi|196210774|gb|EDY05537.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16]
          Length = 640

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 301/592 (50%), Positives = 404/592 (68%), Gaps = 7/592 (1%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+ +     +YDA  IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE+L G
Sbjct: 1   MTMEQRVKQAYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+  D S T++DNGRGIP D+H+  G  A EVIMT LHAGGKF    YKVSGG
Sbjct: 60  YCTEIHVTIGEDNSITIADNGRGIPVDVHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS WL++ + R+G I+   +  G     L V     + TGT   F P  
Sbjct: 120 LHGVGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVIDET-DRTGTTTRFKPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    F+Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V +L+R
Sbjct: 179 EIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNEYF-YEGGIRSYVRHLNR 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG + ALTR
Sbjct: 238 TREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K +  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++
Sbjct: 298 IINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDA 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L EHP  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS
Sbjct: 358 VFSEQFETFLLEHPAVARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGKLADCS 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +I
Sbjct: 418 SRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGIG+D FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 478 TALGTGIGED-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYIYIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY I +GK ++Y  ++  LE  L       + +       G ++   L  
Sbjct: 537 PPLYKIEQGKQVRYAYNDRQLEKILAELPAQPKPMIQRYKGLGEMNPEQLWE 588



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 29/328 (8%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEES 558
           DA++ G  +R  L      + P+    G           +     +   +   ++ +  +
Sbjct: 313 DANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLEHPA 372

Query: 559 LEDYLINQSLSEEIELFCDS--------KGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
           +   ++ + +                  K  +  ++L   + D    D  I + Y     
Sbjct: 373 VARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGD 432

Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILV 664
           +    A      + ++   +   + +    RL+ I   +E          G   + DI  
Sbjct: 433 SAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGIGEDFDISK 492

Query: 665 KRIAR-GVQEQFVLEGSSIFS----FGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITG 718
            R  +  +     ++G+ I +    F  +Y R    R         L  I  G +++   
Sbjct: 493 ARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYIYIAQPPLYKIEQGKQVRYAY 552

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN  QLWETT+NP+TR+LL+V + DA  AD+ 
Sbjct: 553 NDRQLEKILAELPAQPKPMIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADET 612

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F  LMGD+VEPRR+FI+EN+     LDI
Sbjct: 613 FEILMGDKVEPRRQFIEENARYVKNLDI 640


>gi|281424989|ref|ZP_06255902.1| DNA gyrase, B subunit [Prevotella oris F0302]
 gi|299142183|ref|ZP_07035316.1| DNA gyrase, B subunit [Prevotella oris C735]
 gi|281400833|gb|EFB31664.1| DNA gyrase, B subunit [Prevotella oris F0302]
 gi|298576272|gb|EFI48145.1| DNA gyrase, B subunit [Prevotella oris C735]
          Length = 656

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 276/649 (42%), Positives = 398/649 (61%), Gaps = 15/649 (2%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N  +  +Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAENQNSEANYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   + +TLN DGS TV DNGRGIP D HK+   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCTDVEITLNEDGSVTVEDNGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALSS +  ++ R+G IY+  +  G    P+ V G      GT   F P  
Sbjct: 120 LHGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGETT-KRGTRQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236
            +F+   + +D +  R+REL++LN+ ++I+L         + R+     K G++ FV Y+
Sbjct: 179 TVFTTTTYKWDIVASRMRELAYLNAGIRITLTDLRPNEEGKTRQEVFHAKDGLKEFVRYV 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  +  I I++A+ +N  Y EN+  + NNI   +GGTHL+G R+AL
Sbjct: 239 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAAL 298

Query: 297 TRQITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +         +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 TRTLKAYADAEPTIAKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + LS +LEEHP+EAK I +KV+ A+  R AAR+AR+  +RK V+    LPG
Sbjct: 359 SGAVQQAVGEALSNYLEEHPIEAKKICEKVVLAATARIAARKARESVQRKSVMTGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK+ E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ ++ ++  ++
Sbjct: 419 KLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478

Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 SVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I +G LYI  PPLY  T  K+ +Y   E+  + ++      +E +    ++      ++
Sbjct: 539 VIEDGHLYIATPPLYKCTYKKASEYCYTEQQRQAFIDKYVEGKEDDKSLHTQRYKGLGEM 598

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                    +D   +       +   E   I  +   +  +     +  
Sbjct: 599 NPEQLWETTMDPKSRLLKQVTIQNAAEADEIFSMLMGDDVEPRREFIEQ 647



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 3/77 (3%)

Query: 729 IGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
            G+   K +  QRYKGLGEMN  QLWETT++P +R L +V I +A++AD++FS LMGD+V
Sbjct: 579 EGKEDDKSLHTQRYKGLGEMNPEQLWETTMDPKSRLLKQVTIQNAAEADEIFSMLMGDDV 638

Query: 786 EPRREFIQENSLPSALD 802
           EPRREFI++N+  + +D
Sbjct: 639 EPRREFIEQNATYANID 655


>gi|227538317|ref|ZP_03968366.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241832|gb|EEI91847.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 652

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 289/603 (47%), Positives = 405/603 (67%), Gaps = 16/603 (2%)

Query: 1   MSDNIQNSS-YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +N+S Y AD+IQ+L+GL+AV+KRPSMYIGDT G  GLHH++YEV+DN+IDE++ G
Sbjct: 1   MSEEKKNTSTYSADNIQVLEGLEAVRKRPSMYIGDT-GVKGLHHLVYEVVDNSIDEAVAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I VT++   S +V DNGRGIPT ++K+E  SA E++MT LHAGGKF++ +YKVSGG
Sbjct: 60  YCDDILVTIHEGNSISVQDNGRGIPTGINKKENKSALELVMTVLHAGGKFDKDTYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ L   + R+G I++  +  G     +   G +   TGT VTF P  
Sbjct: 120 LHGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKAIGESE-RTGTTVTFFPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVS 234
           +IF++   +NYDTL +RLREL+FLN  ++++++D+R        R+   F +GG++ FV 
Sbjct: 179 EIFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREILDDGSFRKDVFFSEGGLQEFVK 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD +++ L+  PI ++G +  + ++LA+++ND Y ENV  + NNI   +GG+H++G R 
Sbjct: 239 FLDGNRQSLIPDPIYVEGIKQGVPVELALQYNDTYSENVHSYVNNINTIEGGSHVAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR +  Y E S   K  K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV  
Sbjct: 299 GLTRTLKKYAEDSGLLKNLKVEIAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V + LS +LEE+P EAKIIV+KV+ A+  R AAR+AR++ +RK V+  + LPGKL
Sbjct: 359 AVDVAVGEILSTYLEENPREAKIIVQKVVIAAQARAAARKAREMVQRKTVMGGSGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS+ DP K E+F VEGDSAGG+AKQGR R+ QAI+PLRGKILNVE+A   K+  ++EI
Sbjct: 419 ADCSDNDPHKCEIFFVEGDSAGGTAKQGRDRKFQAIMPLRGKILNVEKAMEHKIYENEEI 478

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TALG  +G           KLRYHKI+IMTDADVDG+HI TL+LTF+FR M  LI 
Sbjct: 479 KNMFTALGVSVGTPDDAKALNLEKLRYHKIVIMTDADVDGSHIATLILTFYFRYMKELIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL----SEEIELFCDSKGVISKND 586
           NG++YI  PPLY + +GK  QY   E+     +                    G ++   
Sbjct: 539 NGYVYIATPPLYLVKKGKESQYAWTEDQRLQAIQRLKGAGKEDSVHVQRYKGLGEMNAEQ 598

Query: 587 LRN 589
           L +
Sbjct: 599 LWD 601



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 9/123 (7%)

Query: 689 YKRIFSNRIEENYL----TILSLICNGDKIKITGPCS----LLDTIFSIGR-KGISMQRY 739
           Y R     IE  Y+      L L+  G + +           +  +   G+   + +QRY
Sbjct: 529 YFRYMKELIENGYVYIATPPLYLVKKGKESQYAWTEDQRLQAIQRLKGAGKEDSVHVQRY 588

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA QLW+TT+NP+ R+L +V I +A++ D +FS LMGDEV PRREFI++N+  +
Sbjct: 589 KGLGEMNAEQLWDTTMNPEHRTLRQVTIDNAAECDRIFSMLMGDEVAPRREFIEKNARYA 648

Query: 800 ALD 802
            +D
Sbjct: 649 KID 651


>gi|257783820|ref|YP_003179037.1| DNA gyrase, B subunit [Atopobium parvulum DSM 20469]
 gi|257472327|gb|ACV50446.1| DNA gyrase, B subunit [Atopobium parvulum DSM 20469]
          Length = 647

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 283/596 (47%), Positives = 386/596 (64%), Gaps = 15/596 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + + Y+   I+IL+GL+AV+KRP MYIG T   SGLHH+++E++DN++DE++ GY   I 
Sbjct: 3   KENKYNGTEIKILEGLEAVRKRPGMYIGTTSA-SGLHHLVWEIVDNSVDEAMAGYCSKIK 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S +V DNGRGIP DLH ++ I   EV++T LHAGGKF+  +YKVSGGLHGVGV
Sbjct: 62  VTIHPDNSISVEDNGRGIPVDLHPQKKIPTLEVVLTILHAGGKFDNNAYKVSGGLHGVGV 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L  ++KR+G IYEM F  G     +   G      GT +TF P   IF   
Sbjct: 122 SVVNALSKKLVAQVKRDGKIYEMVFERGKTVQKMKEIG-TSKSNGTTITFWPDDMIFETT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK--PL 243
            +N+DTL+ RL+E +FLN +++I+L+D+R   PR++   Y GGI  FV YL+  K   P 
Sbjct: 181 TYNFDTLRDRLQETAFLNKNLKITLVDERELTPRQVDFQYAGGIIDFVKYLNDEKTVLPG 240

Query: 244 MQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +  PI I+G             +++A++WN  + +  L F N+I  ++GG HL G R+AL
Sbjct: 241 LSRPIYIEGKSDPDAPMSQMGEVEVAIQWNTDFSDRTLSFANDIFTEEGGMHLEGFRTAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T+ +  Y  +    K+    + G D REG T+V+S+K+PDP+F  QTK KL SS +R++ 
Sbjct: 301 TKVVNDYGTRQGILKEKDPKLEGGDIREGLTAVISVKLPDPQFEGQTKAKLGSSYMRTLT 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
              V  GLS +LEEHP +AK I+KK   A+  R AAR+AR+ TRRKG+L+ A+LPGKLAD
Sbjct: 361 NKIVTQGLSEYLEEHPNQAKEILKKASQAAKGRLAARKAREATRRKGLLESAALPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS RD + +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNVER +  + LSS  I +
Sbjct: 421 CSVRDAEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQAHRALSSDTITS 480

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITA+GTG+G D F + K RYHKI+IMTDADVDG+HIR LLLTFF+R M  +I  G++Y+
Sbjct: 481 LITAIGTGVG-DEFSLEKARYHKIVIMTDADVDGSHIRILLLTFFYRYMKPMIDAGYIYV 539

Query: 537 IKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +PPLY I    +        DEE   +    +  ++         G +    L  
Sbjct: 540 AQPPLYQIKPKGKKNGKYIYTDEELALETKKFEDNTKYTIQRYKGLGEMDPEQLWA 595



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  Q      +  + + +  I       +         +V      V    +    
Sbjct: 461 ILNVERVQAHRALSSDTITSLITAIGTGVGDEFSLEKARYHKIVIMTDADVDGSHIRILL 520

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSL-LDTIFSIGRKGISMQ 737
             F +      I +  I      +  +   G K    I     L L+T         ++Q
Sbjct: 521 LTFFYRYMKPMIDAGYIYVAQPPLYQIKPKGKKNGKYIYTDEELALETKKFEDNTKYTIQ 580

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEM+  QLW TT+ P  R LL+V I DA  AD   S LMG++VE R++FIQ ++ 
Sbjct: 581 RYKGLGEMDPEQLWATTMEPKNRILLKVTIDDALAADRAVSDLMGNQVEKRKDFIQTHAK 640

Query: 798 PSA-LDI 803
               LDI
Sbjct: 641 DVRFLDI 647


>gi|255038730|ref|YP_003089351.1| DNA gyrase, B subunit [Dyadobacter fermentans DSM 18053]
 gi|254951486|gb|ACT96186.1| DNA gyrase, B subunit [Dyadobacter fermentans DSM 18053]
          Length = 651

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 297/602 (49%), Positives = 412/602 (68%), Gaps = 15/602 (2%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+   ++ +SY A++IQ+L+GL+AV+KRP+MYIGDT G  G+HH+I+EV+DN+IDE++ 
Sbjct: 1   MSNEAVLEVNSYSAENIQVLEGLEAVRKRPAMYIGDT-GFKGVHHLIWEVVDNSIDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I VT+  + S TV DNGRGIPT +H +E  SA EV++T LHAGGKF++ +YKVSG
Sbjct: 60  GYCDTINVTVEKNNSITVKDNGRGIPTGMHPKENKSALEVVLTVLHAGGKFDKDTYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS  L+  + REG I+E  F  G    P  V G +   TGT + FLP 
Sbjct: 120 GLHGVGVSCVNALSIHLRAEVHREGKIFEQEFSEGKPLYPTRVIGDSE-KTGTIIHFLPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
           + IF+V ++ Y+T+  RLRELS+LN  ++I+L DKR  +     R    + + G+  FV+
Sbjct: 179 ATIFTVTEYKYETIATRLRELSYLNKGIRITLEDKREEDENGQFRGEEFYSEVGLNEFVT 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLD  ++PL+  PI ++  +  I +++AM +N  Y ENV  + NNI   +GGTH+SG R+
Sbjct: 239 YLDATRQPLIPEPIHMENDKGVIPVEVAMMYNTSYSENVFSYVNNINTIEGGTHVSGFRA 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y EKS    K+K  + GDD REG T+V+SIK+ +P+F  QTK KL +SEV +
Sbjct: 299 ALTRTLKNYAEKSGILAKEKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTA 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V   V + L  +LEEHP EA++I+ KV+ A+  R AA++AR++ +RK +L    LPGKL
Sbjct: 359 AVSQVVAEMLENYLEEHPKEARVIIDKVILAAKARIAAKKAREMVQRKNILTGTGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           +DCSE DP   EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A+  K+  ++EI
Sbjct: 419 SDCSETDPNVCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAQEYKIYENEEI 478

Query: 475 GTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TA+G  IG+D      +I+KLRYHKI+IMTDAD+DG+HIRTL+LTFFFR M  LI 
Sbjct: 479 KNMFTAMGVQIGKDGDERALNIDKLRYHKIVIMTDADIDGSHIRTLILTFFFRYMKILID 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDL 587
           NG++YI +PPLY + +GK  +Y   E+  E+ +      +E           G ++   L
Sbjct: 539 NGYIYIAQPPLYLVKKGKEERYCWTEQQREEAIREIGAGKEDSVNVQRYKGLGEMNAEQL 598

Query: 588 RN 589
             
Sbjct: 599 WE 600



 Score =  167 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 10/192 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E  QE  +    ++ N    +      +  E++ +        +V      +    
Sbjct: 461 ILNVEKAQEYKIYENEEIKNMFTAMGVQIGKDGDERALNIDKLRYHKIVIMTDADIDGSH 520

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-DKIKITGPCSLLDTIFSIG---R 731
           +      F F      I +  I       L L+  G ++          + I  IG    
Sbjct: 521 IRTLILTFFFRYMKILIDNGYIY-IAQPPLYLVKKGKEERYCWTEQQREEAIREIGAGKE 579

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
             +++QRYKGLGEMNA QLWETT+NP+ RSL +V +  A++AD LFS LMGDEV PRR+F
Sbjct: 580 DSVNVQRYKGLGEMNAEQLWETTMNPERRSLKQVSVESAAEADHLFSMLMGDEVAPRRDF 639

Query: 792 IQENSLPSALDI 803
           I++N+  + +D+
Sbjct: 640 IEKNAKYARVDV 651


>gi|295111747|emb|CBL28497.1| DNA gyrase subunit B [Synergistetes bacterium SGP1]
          Length = 644

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 284/628 (45%), Positives = 392/628 (62%), Gaps = 12/628 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y+A+ I++L+GL+AV+KRP MYIGDT G  GLHH++ EV+DN+IDE++ G+   I VT
Sbjct: 13  NDYNANKIKVLEGLEAVRKRPGMYIGDT-GPRGLHHLVNEVVDNSIDEAMAGFCTRIDVT 71

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S TV D+GRGIPTD H   G    EV++TRLHAGGKF Q +Y VSGGLHGVGVS 
Sbjct: 72  IHKDESVTVQDDGRGIPTDPHPSNGRPTCEVVLTRLHAGGKFEQGAYSVSGGLHGVGVSA 131

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS W ++ I R G      F  G+    L   G   +  GT + +LP  +IF     
Sbjct: 132 VNALSEWFEVTIARNGMERTQRFERGVPVTDLSE-GVPVDWQGTRIHYLPDKEIFEDVHH 190

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           + +TL+ R  EL+FLN+ V+I + D+RS E RE     +GG+ AFV YL+R +  L   P
Sbjct: 191 SLETLKSRFMELAFLNAGVRIFVTDERSSESREYHF--EGGVSAFVQYLNRDRTTLFAPP 248

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + I G R++I +D+A+++ND Y E +L + N I   +GGTHL GLR ALTR +       
Sbjct: 249 VVISGERNDIKVDMALQYNDEYQERILTYANLIHTVEGGTHLMGLRQALTRALNEAARSG 308

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
                 + ++ GDD +EG T VLS+K+ +P+F  QTK KL +S+VR  V+S V +GL + 
Sbjct: 309 KLLNDKEDNLTGDDLKEGLTCVLSVKLVEPQFEGQTKTKLGNSDVRGAVDSVVYEGLLSV 368

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           +EE P   + IV K L A   R+AA++A++L  RKG +   +LPGKLADCS + P+ SE+
Sbjct: 369 IEERPDIVRPIVDKALRARRAREAAKKAKELV-RKGAMTGMNLPGKLADCSSKTPENSEI 427

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQ R R  QAILPLRGKILNVE+A+  KML ++EI T+ITALG GIG 
Sbjct: 428 YIVEGDSAGGSAKQARDRTFQAILPLRGKILNVEKAQEHKMLQNREIQTIITALGCGIG- 486

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
             F+  +LRYHKIIIMTDADVDGAHI TLLLTFF+R MP L+  G++Y+ +PPLY + RG
Sbjct: 487 TEFNATRLRYHKIIIMTDADVDGAHISTLLLTFFYRHMPELLTEGYIYLAQPPLYRVQRG 546

Query: 548 KSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           K + Y   E+ L  ++      +++        G ++   L         +D   +    
Sbjct: 547 KQVHYCYTEKELRQHVDGAPDPDKVGVQRYKGLGEMNPEQLW-----MTTMDPANRILKK 601

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSL 634
                 +       +   E  +     +
Sbjct: 602 VELDDDLLADEYFDILMGERVEPRREFI 629



 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  QLW TT++P  R L +V++ D   AD+ F  LMG+ VEPRREFI  N
Sbjct: 573 VQRYKGLGEMNPEQLWMTTMDPANRILKKVELDDDLLADEYFDILMGERVEPRREFITTN 632

Query: 796 SLPS-ALD 802
           +  +  +D
Sbjct: 633 ANSAKNVD 640


>gi|313157284|gb|EFR56710.1| DNA gyrase, B subunit [Alistipes sp. HGB5]
          Length = 653

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 286/605 (47%), Positives = 391/605 (64%), Gaps = 13/605 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q   Y A +IQ+L+GL+AV+KRP+MYIGD  GE GLHH++YEV+DN+IDE+L GY   
Sbjct: 9   KKQEEEYSASNIQVLEGLEAVRKRPAMYIGDI-GEKGLHHLVYEVVDNSIDEALAGYCTD 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+N D S TV DNGRGIPTD H++EG SA EV++T LHAGGKF++ SYKVSGGLHGV
Sbjct: 68  IDVTINEDNSITVRDNGRGIPTDYHEKEGKSALEVVLTVLHAGGKFDKGSYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           GVS VNALS+ L   I  R+G IY  S+  G   + + V G    D GT +TF P   IF
Sbjct: 128 GVSCVNALSTLLIAEIHSRDGKIYRQSYSKGAPTSQVEVVGECT-DRGTTITFKPDGSIF 186

Query: 183 S-VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLD 237
           +   ++ Y+ L +RLREL+FLN  + ++L DKR    + E      + + G++ FV YLD
Sbjct: 187 TLTTEYKYEILANRLRELAFLNKGIHLNLTDKRSKDENGEYVHDNFYSEEGLKEFVQYLD 246

Query: 238 RHK-KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
             +  P++   I +   ++ + +++AM++ND + ENV  + NNI   +GGTHL+G R AL
Sbjct: 247 ATRGTPIIDQIIYLDTEKNGVPVEVAMQYNDSFSENVHSYVNNINTIEGGTHLTGFRRAL 306

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y E S    K K  + GDD REG T+V+S+K+ +P+F  QTK KL + EV + V
Sbjct: 307 TRTLKKYAEDSGMLSKLKFDINGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNDEVSAAV 366

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +  ++  L  +LEE+P +AK IV+KV+ A+  R AAR AR++ +RK VL  A LPGKLAD
Sbjct: 367 DQAMSSALGHYLEENPKDAKAIVQKVILAATARHAARHAREMVQRKTVLSGAGLPGKLAD 426

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C+ RD   +E+F VEGDSAGG+AK GR R  QAI+PLRGKILN+E+A+  +M  ++EI  
Sbjct: 427 CTSRDRSIAEIFFVEGDSAGGTAKSGRDRNFQAIMPLRGKILNIEKAQEHRMWENEEIKN 486

Query: 477 LITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           + TALG  IG +         KLRY KIIIMTDADVDG+HI TL+LTFFFR+M  LI NG
Sbjct: 487 MFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFFFRKMKELIENG 546

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI  PPLY + +GK  +Y   E+  +           I+ +     + +       ++
Sbjct: 547 HVYIATPPLYLVKKGKQERYCWTEKERDTISAEFGKGVHIQRYKGLGEMNAHQLWDTTMN 606

Query: 593 DALKI 597
              +I
Sbjct: 607 PDTRI 611



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 6/187 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E  QE  +    ++ N    +      E+  K+ +      D ++      V    
Sbjct: 467 ILNIEKAQEHRMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSH 526

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735
           +      F F  K K +  N         L L+  G + +        DTI +   KG+ 
Sbjct: 527 IATLMLTFFF-RKMKELIENGHVYIATPPLYLVKKGKQERYCWTEKERDTISAEFGKGVH 585

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLW+TT+NPDTR L +V I +A++AD +FS LMGDEV PRREFI++N
Sbjct: 586 IQRYKGLGEMNAHQLWDTTMNPDTRILRQVNIENAAEADRIFSMLMGDEVPPRREFIEKN 645

Query: 796 SLPSALD 802
           +  + +D
Sbjct: 646 AHYANID 652


>gi|110598305|ref|ZP_01386580.1| DNA gyrase, B subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110340113|gb|EAT58613.1| DNA gyrase, B subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 649

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 285/590 (48%), Positives = 398/590 (67%), Gaps = 10/590 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S+Y A++IQ+L G++ V+ RP+MYIGD     GLHH++YE++DN+IDE+L G+ D I
Sbjct: 13  TAPSTYGANNIQVLDGIEHVRMRPAMYIGDIHS-RGLHHLVYEIVDNSIDETLGGFNDYI 71

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V LN +GS TV D GRGIP D+H E+  SA E++MT + AGGKF++ +YKVSGGLHGVG
Sbjct: 72  FVALNPEGSVTVIDRGRGIPVDIHPEKQKSALELVMTVIGAGGKFDKGAYKVSGGLHGVG 131

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALS W ++ + R+GN+Y   F  GI    + V     +  GT+ TF+P   IF  
Sbjct: 132 ASVVNALSEWCEVEVYRDGNVYFQRFERGIPQGDVRVI-GKTDKKGTKTTFMPDHQIFKT 190

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F  D +  R+REL+FLN  + I++   +  E  +    Y GGI+ FV + D+++  L+
Sbjct: 191 TEFRKDIIIDRMRELAFLNKELSITV---QDTEGIDEIFHYVGGIKEFVQFTDQNRINLL 247

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + PI + G RD+  +++A+++ND Y ENV  + NNI   +GGTH++G R ALTR + +Y 
Sbjct: 248 KEPIYLYGERDSTIVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAYA 307

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +K+   K  K S+ GDD +EG T+V+S+K+ +P+F  QTK KL +SE +S+VE+ VN+ L
Sbjct: 308 QKNDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETIVNEQL 367

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + E +P   K+I++KV  A+M R+AAR+A++LTRRK VL+ + LPGKLADCS  DP+ 
Sbjct: 368 AEFAESNPNVLKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEH 427

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR  KML ++EI T+I ALGT 
Sbjct: 428 CELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTS 487

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G++ F   KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI  G ++I +PPLY +
Sbjct: 488 FGEEEFSTEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGRVFIAQPPLYLV 547

Query: 545 TRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589
             GK  QY  D++           + +  +          G ++   L +
Sbjct: 548 KSGKEQQYAWDDDERNSITESMKKMQKGKANIHIQRYKGLGEMNPEQLWS 597



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E+ +         ++      V    +      F F      I + R+       L L+
Sbjct: 489 GEEEFSTEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGRVF-IAQPPLYLV 547

Query: 709 CNGDKIKI-------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
            +G + +              +      G+  I +QRYKGLGEMN  QLW TT++P  RS
Sbjct: 548 KSGKEQQYAWDDDERNSITESMKK-MQKGKANIHIQRYKGLGEMNPEQLWSTTMDPAHRS 606

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LL V + +A +AD +FS LMGD+VEPRREFI++N+     LD+
Sbjct: 607 LLLVNVENAMEADQVFSTLMGDKVEPRREFIEKNARYVRRLDV 649


>gi|138893684|ref|YP_001124137.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2]
 gi|134265197|gb|ABO65392.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2]
          Length = 640

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 301/592 (50%), Positives = 404/592 (68%), Gaps = 7/592 (1%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+ +     +YDA  IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE+L G
Sbjct: 1   MTMEQRVEQAYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+  D S T++DNGRGIP D+H+  G  A EVIMT LHAGGKF    YKVSGG
Sbjct: 60  YCTEIHVTIGEDNSITIADNGRGIPVDVHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS WL++ + R+G I+   +  G     L V     + TGT   F P  
Sbjct: 120 LHGVGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVIDET-DRTGTTTRFKPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    F+Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V +L+R
Sbjct: 179 EIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNEYF-YEGGIRSYVRHLNR 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG + ALTR
Sbjct: 238 TREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K +  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++
Sbjct: 298 IINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDA 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L EHP  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS
Sbjct: 358 VFSEQFETFLLEHPAVARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGKLADCS 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +I
Sbjct: 418 SRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGIG+D FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 478 TALGTGIGED-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYIYIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY I +GK ++Y  ++  LE  L       + +       G ++   L  
Sbjct: 537 PPLYKIEQGKQVRYAYNDRQLEKILAELPAQPKPMIQRYKGLGEMNPEQLWE 588



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 29/328 (8%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEES 558
           DA++ G  +R  L      + P+    G           +     +   +   ++ +  +
Sbjct: 313 DANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLEHPA 372

Query: 559 LEDYLINQSLSEEIELFCDS--------KGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
           +   ++ + +                  K  +  ++L   + D    D  I + Y     
Sbjct: 373 VARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGD 432

Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILV 664
           +    A      + ++   +   + +    RL+ I   +E          G   + DI  
Sbjct: 433 SAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGIGEDFDISK 492

Query: 665 KRIAR-GVQEQFVLEGSSIFS----FGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITG 718
            R  +  +     ++G+ I +    F  +Y R    R         L  I  G +++   
Sbjct: 493 ARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYIYIAQPPLYKIEQGKQVRYAY 552

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN  QLWETT+NP+TR+LL+V + DA  AD+ 
Sbjct: 553 NDRQLEKILAELPAQPKPMIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADET 612

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F  LMGD+VEPRR+FI+EN+     LDI
Sbjct: 613 FEILMGDKVEPRRQFIEENARYVKNLDI 640


>gi|310777811|ref|YP_003966144.1| DNA gyrase subunit B [Ilyobacter polytropus DSM 2926]
 gi|309747134|gb|ADO81796.1| DNA gyrase subunit B [Ilyobacter polytropus DSM 2926]
          Length = 634

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 267/584 (45%), Positives = 393/584 (67%), Gaps = 5/584 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A++I +L+GL+AV+KRP MYIG T    GLHH+++E++DN++DESL GY + I + 
Sbjct: 2   SNYQAENITVLEGLEAVRKRPGMYIGSTSA-RGLHHLVWEIVDNSVDESLAGYCNKIEIK 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  D    VSDNGRGIP  +H + G SA E+++T LHAGGKF   +YKVSGGLHGVGVSV
Sbjct: 61  VLKDNIIEVSDNGRGIPVGIHPKHGKSALEIVLTVLHAGGKFENSNYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS W ++ +KR+G I+   +  G+ +  + V G   N+TGT V F   S+IF   ++
Sbjct: 121 VNALSEWTEVFVKRDGKIHNQRYNRGVPEFDVKVVGKT-NETGTTVRFKADSEIFETLEY 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++D L+ RL+E+++LN  ++I LID+R  E +E  + + GGI  F+  ++  +  L+  P
Sbjct: 180 DFDVLKSRLKEMAYLNKGLEIVLIDERKEEIKEEILKFDGGIVDFIKEVEEGQATLIPEP 239

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I + G  ++I +++A+ + +   E +  F NNI   +GGTH+SG R ALTR I    +  
Sbjct: 240 IYMAGESEDIIVEIAILYTEKQRETIYSFVNNINTHEGGTHVSGFRMALTRIINEMAKSL 299

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K+   +  G D REG T+++SIK+P+P+F  QTK KL +SEV +VV S +   L   
Sbjct: 300 GLLKERDGNFQGQDIREGVTAIISIKVPEPQFEGQTKTKLGNSEVTAVVSSIMGQFLKMH 359

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           +E+HP +A+ I++++L +   R+AA++AR+L  RK  L++ SLPGKLADCS + P++SE+
Sbjct: 360 MEDHPSDARNIIERILMSRKAREAAKKARELVMRKSALEVGSLPGKLADCSSKKPEESEV 419

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAKQGR R  QAILPLRGKI+NVE++   K L + E+ +++TA G  IG 
Sbjct: 420 FIVEGDSAGGSAKQGRDRHTQAILPLRGKIINVEKSGLHKALENNEVRSMVTAFGANIGD 479

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D  ++ KLRYHKIIIMTDADVDGAHIRTL+LTFF+R M  LIH G++YI +PPL+ +T G
Sbjct: 480 DL-ELEKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMVDLIHGGYIYIAQPPLFKVTAG 538

Query: 548 KSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           +++QY   ++ L++         +          G ++ + L  
Sbjct: 539 RTIQYAYSDKQLKEITTVMDADNKRYTLQRYKGLGEMNPDQLWE 582



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 98/263 (37%), Gaps = 14/263 (5%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
             +      ++        L  +      +   +S+  I + D         +       
Sbjct: 383 AAKKARELVMRKSALEVGSLPGKLADCSSKKPEESEVFIVEGDSAGGSAKQGRDRHTQAI 442

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E++ +         + +  +  + + + L     +  K           +
Sbjct: 443 LPLRGKIINVEKSGLHKALENNEVRSMVTAFGANIGDDLELEKLRYHK-----------I 491

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL- 722
           +      V    +      F +      I    I      +  +              L 
Sbjct: 492 IIMTDADVDGAHIRTLILTFFYRYMVDLIHGGYIYIAQPPLFKVTAGRTIQYAYSDKQLK 551

Query: 723 -LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
            + T+     K  ++QRYKGLGEMN  QLWETT+N DTR+LL+V I DA +AD LF +LM
Sbjct: 552 EITTVMDADNKRYTLQRYKGLGEMNPDQLWETTMNHDTRTLLQVTIDDAREADILFDKLM 611

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           GD+VEPRR FI+E+S     LDI
Sbjct: 612 GDKVEPRRNFIEEHSHFVKNLDI 634


>gi|257065525|ref|YP_003151781.1| DNA gyrase, B subunit [Anaerococcus prevotii DSM 20548]
 gi|256797405|gb|ACV28060.1| DNA gyrase, B subunit [Anaerococcus prevotii DSM 20548]
          Length = 633

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 286/585 (48%), Positives = 405/585 (69%), Gaps = 5/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +Q+++YDA +I++L+GL+ V+ RP MYIG T  E GLHH++YEV+DN++DE+L G  D I
Sbjct: 1   MQDNNYDAGNIRVLEGLEPVRLRPGMYIGSTS-EKGLHHLVYEVVDNSVDEALAGRCDYI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+  D    V D+G GIP   H     S  E ++T LHAGGKF+  +Y+ SGGLHGVG
Sbjct: 60  KVTVTKDNVIKVEDDGSGIPVKEHPTTHKSTLETVLTVLHAGGKFDDSAYQFSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS +L   +KR+G+IY+M+F  G + + L + G   ++TGT +TF P  +IF  
Sbjct: 120 VSVVNALSEYLIAEVKRDGHIYKMTFAKGEVTSDLEIIGDT-DETGTTITFKPDGEIFDT 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+  TL++R RE++FLN  V+I L D+R  +    +  Y+GGI+ FV+YL+R+K P+M
Sbjct: 179 TIFDRKTLENRFREMAFLNKGVEIILEDER--DDFSESFKYEGGIKEFVTYLNRNKTPIM 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +      G +++I ++++ ++ DGY EN+L + NNI   +GGTHLSG RSALTR +  Y 
Sbjct: 237 EQVPHFDGMQEDIEVEVSFQYTDGYSENILTYANNIHTPEGGTHLSGFRSALTRTVNDYA 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K++  ++ GDD REG T+V+SIK+ DP+F  QTK KL +SEVR  V++FV+  L
Sbjct: 297 RNFKFLKENDENLQGDDIREGITAVVSIKISDPQFEGQTKAKLGNSEVRGAVDTFVSQRL 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
            A+LEE+P  AK I++K L +   R+AAR+ARDLTR++ +LD  +LPGKLADC   D  +
Sbjct: 357 QAYLEENPKPAKNIIEKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQSTDLSE 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+F+VEG+SAGGSAK GR    QAILPLRGKI+NVE+A  D++L+S+EI  +ITA GTG
Sbjct: 417 NEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNSEEIKAMITAFGTG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDI+KLRY KIIIMTDADVDGAHIRTLLLTFF+R M  LI  G +Y+ +PPLY I
Sbjct: 477 IGKE-FDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIDEGHVYVAQPPLYKI 535

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + G++ +YV  +   +  L   ++           G ++ + L +
Sbjct: 536 SHGRNERYVYTDAERDKVLKELNVDNYKINRYKGLGEMNADQLWD 580



 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 2/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +  + ++   +        K +  S      ++      V    +    
Sbjct: 449 IMNVEKANLDRILNSEEIKAMITAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLL 508

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I    +      +  +    ++  +         +  +      + RYK
Sbjct: 509 LTFFYRYMKPLIDEGHVYVAQPPLYKISHGRNERYVYTDAERDKVLKELNVDNYKINRYK 568

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKIT-DASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           GLGEMNA QLW+TT++PD R LLRV    D++  DD FS LMG++VEPRR FIQEN+   
Sbjct: 569 GLGEMNADQLWDTTMDPDHRVLLRVNEDLDSTSTDDTFSLLMGEKVEPRRNFIQENAKYV 628

Query: 800 -ALDI 803
             +D+
Sbjct: 629 SNIDV 633


>gi|210624032|ref|ZP_03294149.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM 13275]
 gi|210153239|gb|EEA84245.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM 13275]
          Length = 633

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 294/583 (50%), Positives = 398/583 (68%), Gaps = 3/583 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A  IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L G    I V
Sbjct: 2   KQEYGASQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGNCSKIYV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV D+GRGIP ++H + G+S  E ++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  AINADGSITVEDDGRGIPVEVHPKTGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS WL   + R+G  Y   +  G     L V G + + TGT ++F+P +++F   +
Sbjct: 121 VVNALSEWLVAEVHRDGKAYRQEYKKGNPQTKLEVVGESDH-TGTIISFMPDAEVFDEIE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F++DTL++RLRELSFLN  ++I   DKR  + +     Y GG+  +V +L++ +  + + 
Sbjct: 180 FSFDTLEYRLRELSFLNKGIKIIFEDKREGKEKYRDFHYTGGLVEYVKFLNKSRTGIHED 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            + I    D+  +++AM++ DGY EN+  F NNI   +GG+HL+G ++ALT+ I  Y ++
Sbjct: 240 IVYIDKKVDDCLVEIAMQYTDGYTENIYSFANNINTHEGGSHLAGFKAALTKTINEYAKR 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+V+S+K+PDP+F  QTK KL ++ +R +V+    + L +
Sbjct: 300 NGALKDKDSNLSGEDIREGLTAVVSVKLPDPQFEGQTKTKLGNTFMRGIVDGVTVEELGS 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P  AK+IV K L A   R+AA+RAR+LTRRK VL+  SLPGKLADCSE+DP KSE
Sbjct: 360 FLEENPNTAKVIVDKALRAQRAREAAKRARELTRRKSVLESTSLPGKLADCSEKDPSKSE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L+S EI  +ITA G GIG
Sbjct: 420 IFLVEGDSAGGSAKQGRDRNTQAILPLRGKILNVEKSRLDKILASDEIKNMITAYGCGIG 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D FD+ K RYHKIIIMTDADVDGAHIRTLLLTFFFR M  LI  G++Y  +PPLY +T+
Sbjct: 480 ND-FDLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEEGYVYAAQPPLYKVTK 538

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            K   YV  ++ L+D L      +         G ++   L +
Sbjct: 539 QKKEYYVYSDKELDDLLNEIGRDKYDIQRYKGLGEMNPEQLWD 581



 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++ N +          +         ++      V    +    
Sbjct: 450 ILNVEKSRLDKILASDEIKNMITAYGCGIGNDFDLEKARYHKIIIMTDADVDGAHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I    +      +  +     +  +     L D +  IGR    +QRYK
Sbjct: 510 LTFFFRYMRPLIEEGYVYAAQPPLYKVTKQKKEYYVYSDKELDDLLNEIGRDKYDIQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLW+TT+NP+TR+LL+V I DA+ AD++FS LMGD+V PRREFIQEN+    
Sbjct: 570 GLGEMNPEQLWDTTMNPETRTLLQVTIEDAAIADEIFSMLMGDKVAPRREFIQENAKYVR 629

Query: 800 ALDI 803
            LD+
Sbjct: 630 NLDV 633


>gi|317504159|ref|ZP_07962158.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
           DSM 15606]
 gi|315664735|gb|EFV04403.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
           DSM 15606]
          Length = 656

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/649 (42%), Positives = 399/649 (61%), Gaps = 15/649 (2%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N  +  +Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAENQNSEANYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   + +TLN DGS TV DNGRGIP D HK+   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCTDVEITLNEDGSVTVEDNGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +  ++ R+G IY+  +  G    P+ V G      GT   F P  
Sbjct: 120 LHGVGVSCVNALSTHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGETT-KRGTRQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---REITMFYKGGIEAFVSYL 236
            IF+   + +D +  R+REL++LN+ ++I+L D R  E    R+     K G++ FV Y+
Sbjct: 179 TIFTTTTYKWDIVASRMRELAYLNAGIRITLTDMRHDEEGKIRQEVFHAKDGLKEFVRYV 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  +  I I++A+ +N  Y EN+  + NNI   +GGTHL+G R+AL
Sbjct: 239 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAAL 298

Query: 297 TRQITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +         +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 TRTLKAYADAEPTIAKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + LS +LEEHP+EAK I +KV+ A+  R AAR+AR+  +RK V+    LPG
Sbjct: 359 SGAVQQAVGEALSNYLEEHPIEAKKICEKVVLAATARIAARKARESVQRKNVMTGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK+ E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ ++ ++  ++
Sbjct: 419 KLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478

Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 SVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I +G LYI  PPLY  T  K  +Y   E+  + ++      +E +    ++      ++
Sbjct: 539 VIEDGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYVDGKEDDKGLHTQRYKGLGEM 598

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                    +D   +       +   E   I  +   +  +     +  
Sbjct: 599 NPEQLWETTMDPKSRLLKQVTIQNAAEADEIFSMLMGDDVEPRREFIEQ 647



 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 58/71 (81%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG+  QRYKGLGEMN  QLWETT++P +R L +V I +A++AD++FS LMGD+VEPRREF
Sbjct: 585 KGLHTQRYKGLGEMNPEQLWETTMDPKSRLLKQVTIQNAAEADEIFSMLMGDDVEPRREF 644

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 645 IEQNATYANID 655


>gi|147676340|ref|YP_001210555.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum
           SI]
 gi|146272437|dbj|BAF58186.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum
           SI]
          Length = 643

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 318/635 (50%), Positives = 424/635 (66%), Gaps = 10/635 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + N  NS Y A+ IQIL+GL+AV++RP MYIG T    GLHH++YEV+DN+IDE++ G+ 
Sbjct: 9   TSNNNNSKYGAEEIQILEGLEAVRRRPGMYIGSTSA-RGLHHLVYEVVDNSIDEAMAGFC 67

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V LN DGS TV DNGRGIP D+H + G  A EV+MT LHAGGKF    YKVSGGLH
Sbjct: 68  DRIEVILNEDGSATVIDNGRGIPVDIHPKTGRPAVEVVMTMLHAGGKFGGGGYKVSGGLH 127

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WL++ +KR+G +Y   +  GI    L+V G +   TGT+VTF+P  +I
Sbjct: 128 GVGVSVVNALSLWLEVEVKRDGKVYYQRYSRGIPVTGLLVKGKSS-ATGTKVTFMPDPEI 186

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    FN D L  RLRELSFLN  V+I L D+RS +       + GGI  FV YL++ K 
Sbjct: 187 FEDLIFNQDILAQRLRELSFLNMGVKIILKDRRSGQET--VFQHDGGIMDFVRYLNKSKT 244

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           PL   PI IQ  +D++ +++A+++ D Y E++L + NNI   DGGTH +G ++ALTR I 
Sbjct: 245 PLHGKPIYIQKQKDDVLVEVALQYTDTYVESILSYANNINTIDGGTHEAGFKAALTRVIN 304

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K    K    ++ G+D REG T+V+S+K+P+P+F  QTK KL +SEVRS+V+S V 
Sbjct: 305 DYGRKYNLLKNGAGNLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEVRSIVDSVVG 364

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +GL  +LEE+P  A+ I++K + AS  R+AAR+AR+LTRRK  L+ ++LPGKLADCSERD
Sbjct: 365 EGLGIFLEENPSIARRILEKAVTASRAREAARKARELTRRKSALEGSTLPGKLADCSERD 424

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L+++EI  +ITAL
Sbjct: 425 PSVSELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILANEEIRAMITAL 484

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ FD++K RYHKII+M+DADVDGAHIRTLLLTFF+R M  LI  G+++I +PPL
Sbjct: 485 GTGIGEE-FDVSKARYHKIILMSDADVDGAHIRTLLLTFFYRYMRPLIEKGYVFIAQPPL 543

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  +Y   +  LE  L                G ++   L         +D   
Sbjct: 544 YRVKKGKLEKYAYSDAELEKLLDQIGRDGVSIQRYKGLGEMNAEQLWET-----TMDPET 598

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           +     + +  IE   +  +   +  +     +  
Sbjct: 599 RTVMQVNLEDAIEADAVFSMLMGDRVEPRRDFIQE 633



 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +     + +  S      ++      V    +   +
Sbjct: 460 ILNVEKARLDKILANEEIRAMITALGTGIGEEFDVSKARYHKIILMSDADVDGAHI--RT 517

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFS-IGRKGISMQR 738
            + +F  +Y R    +                K++        L+ +   IGR G+S+QR
Sbjct: 518 LLLTFFYRYMRPLIEKGYVFIAQPPLYRVKKGKLEKYAYSDAELEKLLDQIGRDGVSIQR 577

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEMNA QLWETT++P+TR++++V + DA +AD +FS LMGD VEPRR+FIQEN+ L
Sbjct: 578 YKGLGEMNAEQLWETTMDPETRTVMQVNLEDAIEADAVFSMLMGDRVEPRRDFIQENARL 637

Query: 798 PSALDI 803
              LDI
Sbjct: 638 VRNLDI 643


>gi|302391744|ref|YP_003827564.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
 gi|302203821|gb|ADL12499.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
          Length = 637

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 285/636 (44%), Positives = 411/636 (64%), Gaps = 6/636 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +   Y+A+ IQ+L+GL+AV+KRP MYIG T G  GLHH+++E +DN+IDE L G+ + I
Sbjct: 4   QKELDYNAEQIQVLEGLEAVRKRPGMYIGST-GTKGLHHLVWEAVDNSIDEFLAGHGEEI 62

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +      +V D GRGIP ++H ++ + AA++++T LHAGGKF+   YKVSGGLHGVG
Sbjct: 63  KVKIKEGSIISVEDQGRGIPVEVHPDKKLPAAQLVLTTLHAGGKFDSSGYKVSGGLHGVG 122

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS WL+L I R G  Y   +  G+       + S    TGT++ F P  DIF  
Sbjct: 123 ISVVNALSEWLELTIWRNGYTYTQQYEKGVPVTEFEKSNSTT-KTGTKIEFKPDEDIFDN 181

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + +D L +RL+E +FLN  ++ISL+D R    +E+T  Y GG+EAF+ YL++ +  L 
Sbjct: 182 VKYKFDVLANRLQESAFLNKGLKISLVDTRPGLEKEVTYQYDGGLEAFIDYLNQDRDLLH 241

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              + ++   D+  +++A ++N  ++E +  F NNI   DGG HL+G ++ALTR   +Y 
Sbjct: 242 DDIVYLEEEVDDTYVEVAFQYNKSFNERIYSFANNINTHDGGYHLTGFKTALTRAFNNYA 301

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           + +   KK    + G D REG T+V+++K+ +P+F  QTK KL +SE+RSVVE  V + L
Sbjct: 302 KDNNLLKKSDPKLTGRDLREGLTAVVNVKLTEPQFEGQTKAKLGNSEIRSVVEGAVYNYL 361

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L  H   AK ++ K L+A   R AA++A++LT+RKGVL+  SLPGKL+DCS R  ++
Sbjct: 362 NQYLPRHHDMAKEVINKALEAVKARKAAKKAKELTKRKGVLNNNSLPGKLSDCSSRKSEE 421

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERAR +K++++ EI  +ITALGTG
Sbjct: 422 SELYLVEGDSAGGSAKQGRNRDFQAILPLKGKILNVERARLNKIINNNEIAAIITALGTG 481

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ F+I+KLRYHKIIIMTDADVDGAHI TL+LT F+R MP LI  G +Y+ +PPLY +
Sbjct: 482 IGEE-FNIDKLRYHKIIIMTDADVDGAHICTLILTLFYRYMPELIREGHVYVAQPPLYKV 540

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN--FIDDALKIDKLIK 602
           T     +Y+  ++ L+ YL +   S+         G ++ + L       +  K+ +++ 
Sbjct: 541 TYRGDEEYIYTDKQLQKYLADLDRSKVSIQRYKGLGEMNPSQLWETTMNPENRKLQEIMV 600

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           D     D  F            E     N  LAS L
Sbjct: 601 DEEREADSIFTRLMGSKAKLRREFIM-ANADLASNL 635



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 12/192 (6%)

Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672
           +E+A ++ + N      I  +L + +    N    +  K           ++      V 
Sbjct: 457 VERARLNKIINNNEIAAIITALGTGIGEEFNIDKLRYHK-----------IIIMTDADVD 505

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +        +    + I    +      +  +   GD+  I     L   +  + R 
Sbjct: 506 GAHICTLILTLFYRYMPELIREGHVYVAQPPLYKVTYRGDEEYIYTDKQLQKYLADLDRS 565

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
            +S+QRYKGLGEMN SQLWETT+NP+ R L  + + +  +AD +F+RLMG + + RREFI
Sbjct: 566 KVSIQRYKGLGEMNPSQLWETTMNPENRKLQEIMVDEEREADSIFTRLMGSKAKLRREFI 625

Query: 793 QENS-LPSALDI 803
             N+ L S LD+
Sbjct: 626 MANADLASNLDV 637


>gi|291513912|emb|CBK63122.1| DNA gyrase subunit B [Alistipes shahii WAL 8301]
          Length = 652

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 290/604 (48%), Positives = 392/604 (64%), Gaps = 12/604 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q   Y A +IQ+L+GL+AV+KRP+MYIGD  GE GLHH++YEV+DN+IDE+L GY   
Sbjct: 9   KKQEEEYSASNIQVLEGLEAVRKRPAMYIGDI-GEKGLHHLVYEVVDNSIDEALAGYCTD 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+N D S TV DNGRGIPTD H++EG SA EV++T LHAGGKF++ SYKVSGGLHGV
Sbjct: 68  IDVTINEDNSITVRDNGRGIPTDYHEKEGKSALEVVLTVLHAGGKFDKGSYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           GVS VNALS+ L   I  R+G IY  ++  G   + + V G    D GT +TF P   IF
Sbjct: 128 GVSCVNALSTLLIAEIHSRDGKIYRQTYSKGAPTSQVEVVGECT-DRGTIITFKPDGSIF 186

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---REITMFYKGGIEAFVSYLDR 238
           +    + YD L +RLREL+FLN  + ++L DKR  E    RE   + + G++ FV YLD 
Sbjct: 187 THTTEYKYDILANRLRELAFLNKGISLNLYDKRPDEEGKTREDHFYSEEGLKEFVKYLDA 246

Query: 239 HK-KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +  P+++  I +   ++ + +++AM++ND + ENV  + NNI   +GGTHL+G R ALT
Sbjct: 247 TRGTPIVEQIIYLDTEKNGVPVEVAMQYNDSFSENVHSYVNNINTIEGGTHLTGFRRALT 306

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +  Y E S    K K  + GDD REG T+V+S+K+ +P+F  QTK KL + EV + V+
Sbjct: 307 RTLKKYAEDSGMLAKLKFDINGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNDEVAAAVD 366

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +   L  +LEE+P +AK IV+KV+ A+  R AAR AR+L +RK VL  A LPGKLADC
Sbjct: 367 QALASALGDYLEENPKDAKAIVQKVILAATARHAARHARELVQRKTVLSGAGLPGKLADC 426

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S RD   +E+F VEGDSAGG+AK GR R  QAI+PLRGKILN+E+A+  +M  ++EI  +
Sbjct: 427 SSRDRSIAEIFFVEGDSAGGTAKSGRDRNFQAIMPLRGKILNIEKAQEHRMWENEEIKNM 486

Query: 478 ITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
            TALG  IG +         KLRY KIIIMTDADVDG+HI TL+LTFFFR+M  LI NG 
Sbjct: 487 FTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFFFRKMKELIENGH 546

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI  PPLY + +GK  +Y   E+  ++          I+ +     + +       ++ 
Sbjct: 547 VYIATPPLYLVKKGKQERYCWTEKERDEISAEFGKGVHIQRYKGLGEMNAHQLWETTMNP 606

Query: 594 ALKI 597
             +I
Sbjct: 607 DTRI 610



 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E  QE  +    ++ N    +      E+  K+ +      D ++      V    
Sbjct: 466 ILNIEKAQEHRMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSH 525

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735
           +      F F  K K +  N         L L+  G + +        D I +   KG+ 
Sbjct: 526 IATLMLTFFF-RKMKELIENGHVYIATPPLYLVKKGKQERYCWTEKERDEISAEFGKGVH 584

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NPDTR L +V I +A++AD +FS LMGDEV PRREFI+ N
Sbjct: 585 IQRYKGLGEMNAHQLWETTMNPDTRILRQVNIENAAEADRIFSMLMGDEVPPRREFIERN 644

Query: 796 SLPSALD 802
           +  + +D
Sbjct: 645 AHYANID 651


>gi|307298739|ref|ZP_07578542.1| DNA gyrase, B subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915904|gb|EFN46288.1| DNA gyrase, B subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 631

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 272/580 (46%), Positives = 380/580 (65%), Gaps = 5/580 (0%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y+A +I+ILKGLD V+KRP MYIG T G+SGLHH++YE++DN+IDE++ G+ D I + + 
Sbjct: 5   YNAQNIKILKGLDPVRKRPGMYIGST-GKSGLHHLVYEIVDNSIDEAMGGFCDRINIVIT 63

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS  VSDNGRGIP D+H + G SA EV+MT LHAGGKF++ SYK+SGGLHGVG SVVN
Sbjct: 64  EDGSVIVSDNGRGIPIDIHPDTGTSALEVVMTTLHAGGKFSKDSYKISGGLHGVGASVVN 123

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS W+ + +  +G IY   +  G    P+ V G   N+TGT  +F P   +F+V DF++
Sbjct: 124 ALSEWMIVEVMVDGKIYRQKYERGKALAPVEVVGET-NETGTVTSFKPDPLVFTVTDFDF 182

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L+ R +EL++LN  ++I+  D+R  E R      +GGI  FV  L ++KK + + PI 
Sbjct: 183 DILEARFKELAYLNGGIKITFEDRRIGEKRSYHF--EGGIVEFVKALTKNKKSIHKDPIY 240

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           ++G+ +++ I LAM++   Y E++L F NNI   +GGTHL+G ++ LT+ +     K   
Sbjct: 241 LEGTYNDVKIQLAMQYTSSYDEDILTFVNNIKTIEGGTHLTGFKTVLTKTMNDVGRKHNV 300

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K    ++ G+D REG +++LS+ + +P+F  QTK KL + E    V   V + L  + +
Sbjct: 301 LKDKDPNLQGEDLREGLSAILSVFVKEPQFEGQTKAKLGNDEAFEAVMKVVKEKLEEYFD 360

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +  + K I+ K L+AS  R AA++AR++ RRK  L+  +LPGKLADC   +  ++E+F+
Sbjct: 361 YNQKDLKAILSKALEASRARLAAKKAREMVRRKNALENTTLPGKLADCISENLDETEIFI 420

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAK  RSRE QAILPLRGKILNVE+A  D+ML S+ I  +I ALGTG+G+D 
Sbjct: 421 VEGDSAGGSAKMARSRETQAILPLRGKILNVEKAGLDRMLKSETISNIIVALGTGMGED- 479

Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549
           F+I  LRY KIIIMTDADVDGAHI TLLLT F+R M  LI NG +Y+ + PLY I   + 
Sbjct: 480 FEIKNLRYGKIIIMTDADVDGAHITTLLLTLFYRYMTPLITNGKVYVAQAPLYKIELNRQ 539

Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             Y   +E L  +L   S  +         G ++   L  
Sbjct: 540 KHYFYSDEELTTFLKEHSDRKLNYSRFKGLGEMNPEQLWE 579



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 98/261 (37%), Gaps = 12/261 (4%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
             +       +        L  +      E   +++  I + D         +  +    
Sbjct: 382 AAKKAREMVRRKNALENTTLPGKLADCISENLDETEIFIVEGDSAGGSAKMARSRETQAI 441

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  +   E+   I V+L + +         +  K           +
Sbjct: 442 LPLRGKILNVEKAGLDRMLKSETISNIIVALGTGMGEDFEIKNLRYGK-----------I 490

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +        +      I + ++      +  +  N  K        L 
Sbjct: 491 IIMTDADVDGAHITTLLLTLFYRYMTPLITNGKVYVAQAPLYKIELNRQKHYFYSDEELT 550

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
             +     + ++  R+KGLGEMN  QLWETT+NP+ R L+++ I DA +AD +F+ LMG 
Sbjct: 551 TFLKEHSDRKLNYSRFKGLGEMNPEQLWETTMNPNDRKLVKITIEDAEEADRVFTILMGS 610

Query: 784 EVEPRREFIQENSLP-SALDI 803
           EVE RR FIQ ++L  S LD+
Sbjct: 611 EVEERRSFIQRHALSISNLDV 631


>gi|33864631|ref|NP_896190.1| DNA gyrase subunit B [Synechococcus sp. WH 8102]
 gi|33632154|emb|CAE06610.1| DNA gyrase subunit B [Synechococcus sp. WH 8102]
          Length = 655

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 292/661 (44%), Positives = 410/661 (62%), Gaps = 20/661 (3%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MSDASKVQNAYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VTL  DGS ++SDNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDRILVTLGEDGSASISDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND---TGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L       ++   TGT V F 
Sbjct: 120 LHGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGSLASEDQPASEAGETGTTVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229
           P  +IF+    F+Y TL  RLREL++LN  V+I   D+R        E  E T FY+GGI
Sbjct: 180 PDIEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARNEVGEAHEETYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y++  K  L    I +   +D + ++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVAYMNTEKDALHPDIIYVNSEKDGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++ +K    K+   ++ G++ REG T+VLS+K+P+P F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V++ V +GLS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDNLVGEGLSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD+  LRYH+++IMTDADVDGAHIRTLLLTFF+R   +L
Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKAL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+  Y  +E  L+  L +               G +    L
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLQSFGEKANYTIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                    +D   +       +  +E   I  +   +             +  L+  A 
Sbjct: 600 WET-----TMDPTTRTMKRVEIEDALEADRIFTILMGDKV-APRREFIETHSAELDMTAL 653

Query: 648 K 648
            
Sbjct: 654 D 654



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 10/175 (5%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSK 688
           +K+       A  +         + D+   R  R        V    +      F +  +
Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 536

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747
              +    I      +  +    +         L  T+ S G K   ++QR+KGLGEM  
Sbjct: 537 KALVEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLQSFGEKANYTIQRFKGLGEMMP 596

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            QLWETT++P TR++ RV+I DA +AD +F+ LMGD+V PRREFI+ +   + LD
Sbjct: 597 KQLWETTMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETH--SAELD 649


>gi|212550383|ref|YP_002308700.1| DNA gyrase subunit B [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548621|dbj|BAG83289.1| DNA gyrase subunit B [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 644

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 291/640 (45%), Positives = 405/640 (63%), Gaps = 19/640 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y AD+IQ+L+G++AV+KRP+MYIGD  G+ GLHH++YEV+DN+IDE+L GY   I V +
Sbjct: 3   EYKADNIQVLEGIEAVRKRPAMYIGDI-GQKGLHHLVYEVVDNSIDETLAGYCKNIQVFI 61

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S TV D+GRGIP D H++E  SA EV++T LHAGGKF++ SYKVSGGLHGVGVS V
Sbjct: 62  NDDNSVTVKDDGRGIPVDFHEKEKRSALEVVLTVLHAGGKFDKNSYKVSGGLHGVGVSCV 121

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS++L+  ++R+G IY   F  G + N L + G   ND GT +TF P S IF V ++ 
Sbjct: 122 NALSAYLRAEVRRDGKIYAQEFSCGKVTNELTIIGET-NDRGTTITFKPDSSIFIVTEYK 180

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
           YD L  RLRELSFLN+ V++ L DKR    +   +    +   G+  FV ++D  K+PL+
Sbjct: 181 YDILASRLRELSFLNAGVRLELTDKRVSFVNGTFKHEIFYSSEGLSEFVRFIDSAKQPLI 240

Query: 245 -QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I I   +  I +++AM +N  Y+E++  + NNI   + GTH++G R ALTR +  Y
Sbjct: 241 GNDIIHIITEKQGIPVEIAMTYNTSYNESISSYVNNINTIEHGTHVAGFRRALTRTLKKY 300

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
              S   +K K  +  DD REG T+V+SIK+ +P+F  QTK KL ++E    V+  V   
Sbjct: 301 AVDSKLLEKIKIEISPDDFREGLTAVISIKVQEPQFEGQTKTKLGNNEAIGAVDQAVGTA 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS +LEEHP EAK IV KV+ A+M R AAR AR++ +RK  L    LPGKLADCS+R+P+
Sbjct: 361 LSVYLEEHPKEAKTIVDKVVLAAMARHAARNAREMVQRKSPLAGGGLPGKLADCSDRNPE 420

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A   K+L + EI  + TALG 
Sbjct: 421 KCEIFLVEGDSAGGTAKQGRERKYQAILPLRGKILNVEKAMPYKVLENSEIRNIFTALGV 480

Query: 484 GIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            IG        +I+KLRYHK++IMTDADVDG+HI TL+LTFFFR M  +I  G++YI  P
Sbjct: 481 TIGTTEDSKGLNIDKLRYHKVVIMTDADVDGSHIATLILTFFFRHMRLMIEKGYVYIATP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDLRNFIDDALK 596
           PLY + +GK  +Y   ++  + ++   +  +E ++        G ++   L +       
Sbjct: 541 PLYLLKKGKVEEYCWTDQQRQAFIDKYARGDEKQVHTQRYKGLGEMNAQQLWDT-----T 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           ++  ++       +   E   +  +   E        +  
Sbjct: 596 MNPEVRTLKRVTIENAAEADRVFAILMGEDVTPRREFIED 635



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 57/67 (85%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLW+TT+NP+ R+L RV I +A++AD +F+ LMG++V PRREFI++N+
Sbjct: 578 QRYKGLGEMNAQQLWDTTMNPEVRTLKRVTIENAAEADRVFAILMGEDVTPRREFIEDNA 637

Query: 797 LPSALDI 803
           + + +D+
Sbjct: 638 IYANIDV 644


>gi|28896290|ref|NP_802640.1| DNA gyrase subunit B [Streptococcus pyogenes SSI-1]
 gi|161485752|ref|NP_664280.2| DNA gyrase subunit B [Streptococcus pyogenes MGAS315]
 gi|73919729|sp|Q8K840|GYRB_STRP3 RecName: Full=DNA gyrase subunit B
 gi|28811541|dbj|BAC64473.1| putative DNA gyrase B subunit [Streptococcus pyogenes SSI-1]
          Length = 650

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 276/617 (44%), Positives = 394/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF   SYKVSGGLHGV
Sbjct: 68  IKVFIEADNSITVVDDGRGIPVDIQVKTGRPAVETVFTVLHAGGKFGGGSYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++     +   D       + E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 60/76 (78%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RR+FI+EN++ S LDI
Sbjct: 635 RRDFIEENAVYSTLDI 650


>gi|126697571|ref|YP_001086468.1| DNA gyrase subunit B [Clostridium difficile 630]
 gi|254977347|ref|ZP_05273819.1| DNA gyrase subunit B [Clostridium difficile QCD-66c26]
 gi|255094677|ref|ZP_05324155.1| DNA gyrase subunit B [Clostridium difficile CIP 107932]
 gi|255102904|ref|ZP_05331881.1| DNA gyrase subunit B [Clostridium difficile QCD-63q42]
 gi|255308724|ref|ZP_05352895.1| DNA gyrase subunit B [Clostridium difficile ATCC 43255]
 gi|255316431|ref|ZP_05358014.1| DNA gyrase subunit B [Clostridium difficile QCD-76w55]
 gi|255519091|ref|ZP_05386767.1| DNA gyrase subunit B [Clostridium difficile QCD-97b34]
 gi|255652274|ref|ZP_05399176.1| DNA gyrase subunit B [Clostridium difficile QCD-37x79]
 gi|260681774|ref|YP_003213059.1| DNA gyrase subunit B [Clostridium difficile CD196]
 gi|306521988|ref|ZP_07408335.1| DNA gyrase, B subunit [Clostridium difficile QCD-32g58]
 gi|115249008|emb|CAJ66819.1| DNA gyrase subunit B [Clostridium difficile]
 gi|260207937|emb|CBA60049.1| DNA gyrase subunit B [Clostridium difficile CD196]
          Length = 633

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 295/583 (50%), Positives = 399/583 (68%), Gaps = 3/583 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A  IQ+L+GL+AV+KRP MYIG T    GLHH++YEV+DN+IDE+L+GY   I V
Sbjct: 2   KQEYGASQIQVLEGLEAVRKRPGMYIGSTS-PRGLHHLVYEVVDNSIDEALQGYCSDIYV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N DGS  V DNGRGIP ++H + G S  E ++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  SINEDGSVLVKDNGRGIPVEIHPKTGKSTLETVLTNLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W+   +   G IY+ ++  G+  + L V G +  D GT + F+P   IF   +
Sbjct: 121 VVNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGES-QDKGTMIQFMPDETIFDEIE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+TL++RLRELSFLN  ++I   DKR  + +     Y GG+  ++ YL++ +  +   
Sbjct: 180 FKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKEFHYTGGLVEYIKYLNKSRTGIHDD 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            + I    D+  ++LAM++ DGY EN+  F NNI   +GG+HLSG ++ALT+ +  Y ++
Sbjct: 240 IVYIDKKVDDCFVELAMQYTDGYTENIYSFANNINTHEGGSHLSGFKAALTKTVNDYAKR 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K++  +++G+D REG T+V+S+K+P+P+F  QTK KL +S +R +V+S   D L +
Sbjct: 300 NKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDSVTVDELGS 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P  A+IIV K L A   R+AA++AR+LTRRK VL+  SLPGKLADC+E+DP KSE
Sbjct: 360 FLEENPSTARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDPSKSE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +FLVEGDSAGGSAKQGR R +QAILPLRGKILNVE++R D++LSS EI  +ITA G GIG
Sbjct: 420 IFLVEGDSAGGSAKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGIG 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI+K RYHKIIIMTDADVDGAHIRTLLLTFFFR M  LI  G++Y  +PPLY +T+
Sbjct: 480 ED-FDIDKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQPPLYKVTK 538

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            K   YV  ++ L   L     +          G ++   L  
Sbjct: 539 QKKEHYVYSDKELNILLDEIGRNGVELQRYKGLGEMNAEQLWE 581



 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++ N +        + +         ++      V    +    
Sbjct: 450 ILNVEKSRLDRILSSDEIKNMITAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I    +      +  +     +  +     L   +  IGR G+ +QRYK
Sbjct: 510 LTFFFRYMRPLIDEGYVYAAQPPLYKVTKQKKEHYVYSDKELNILLDEIGRNGVELQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLWETT+NP+TR+LL+V + DA+ AD++FS LMGD+V PR+EFI+EN+    
Sbjct: 570 GLGEMNAEQLWETTMNPETRTLLQVTVEDAAIADEVFSMLMGDKVAPRKEFIEENARFVR 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|124021870|ref|YP_001016177.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9303]
 gi|123962156|gb|ABM76912.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9303]
          Length = 655

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 290/661 (43%), Positives = 405/661 (61%), Gaps = 20/661 (3%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS++ +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH+++EV+DN++DE+L G
Sbjct: 1   MSEDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVFEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V L  DGS +++DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDEILVVLGPDGSASIADNGRGIPTDVHSRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L       S    TGT V F 
Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGTAIGSLRSEAQPASEKGRTGTSVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGI 229
           P  +IF+V   F+Y TL  RLREL++LN  V+I   D+R         P E   FY+GGI
Sbjct: 180 PDEEIFTVGIVFDYATLSARLRELAYLNGGVRIVFRDERQPVLDAEGAPHEEVYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y++  K  L    I +   +DN+ ++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVTYMNAEKDALHPEIIYVNSEKDNVQVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++  K    K+   ++ G++ REG T+VLS+K+PDP F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPAVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD   LRYH+++IMTDADVDGAHIRTL+LTFF+R    L
Sbjct: 480 YKNTEIQALITALGLGIKGEEFDAKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKEL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+  Y  +E  L+  L                 G +    L
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEADLQTTLSGFPEKANYTIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                    +D   +       +  +E   I  +   +             +  L+  A 
Sbjct: 600 WET-----TMDPSTRMMKRVEVQDALEADRIFTILMGDKV-APRREFIETHSAELDMAAL 653

Query: 648 K 648
            
Sbjct: 654 D 654



 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           + +         +V      V    +      F +  + + +    I      +  +   
Sbjct: 499 EEFDAKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKELVEGGYIYIACPPLYKVERG 558

Query: 711 GDKIKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
            +         L  T+     K   ++QR+KGLGEM   QLWETT++P TR + RV++ D
Sbjct: 559 KNHTYCYNEADLQTTLSGFPEKANYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRVEVQD 618

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803
           A +AD +F+ LMGD+V PRREFI+ +S     +ALDI
Sbjct: 619 ALEADRIFTILMGDKVAPRREFIETHSAELDMAALDI 655


>gi|33862394|ref|NP_893954.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9313]
 gi|33640507|emb|CAE20296.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9313]
          Length = 655

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 291/661 (44%), Positives = 405/661 (61%), Gaps = 20/661 (3%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS++ +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH+++EV+DN++DE+L G
Sbjct: 1   MSEDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVFEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V L  DGS ++SDNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDEILVVLGPDGSASISDNGRGIPTDVHSRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L       S    TGT V F 
Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGTAIGSLRSEAQPASEKGRTGTSVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGI 229
           P  +IF+V   F+Y TL  RLREL++LN  V+I   D+R         P E   FY+GGI
Sbjct: 180 PDEEIFTVGIVFDYATLSTRLRELAYLNGGVRIVFRDERQPVLDAEGAPHEEVYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y++  K  L    I +   +DN+ ++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVTYMNAEKDALHPEIIYVNSEKDNVQVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++  K    K+   ++ G++ REG T+VLS+K+PDP F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPAVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD   LRYH+++IMTDADVDGAHIRTL+LTFF+R    L
Sbjct: 480 YKNTEIQALITALGLGIKGEEFDSKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKEL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+  Y  +E  L+  L                 G +    L
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEVDLQTTLSGFPEKANYTIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                    +D   +       +  +E   I  +   +             +  L+  A 
Sbjct: 600 WET-----TMDPSARMMKRVEVQDALEADRIFTILMGDKV-APRREFIETHSAELDMAAL 653

Query: 648 K 648
            
Sbjct: 654 D 654



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           + N E   +  +   +++   +  +    K E+    ++    +++      V    +  
Sbjct: 468 ILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDSKNLRYHRVVI-MTDADVDGAHIRT 526

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQ 737
               F +  + + +    I      +  +    +         L  T+     K   ++Q
Sbjct: 527 LILTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCYNEVDLQTTLSGFPEKANYTIQ 586

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           R+KGLGEM   QLWETT++P  R + RV++ DA +AD +F+ LMGD+V PRREFI+ +S 
Sbjct: 587 RFKGLGEMMPKQLWETTMDPSARMMKRVEVQDALEADRIFTILMGDKVAPRREFIETHSA 646

Query: 798 P---SALDI 803
               +ALDI
Sbjct: 647 ELDMAALDI 655


>gi|325269651|ref|ZP_08136264.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
           multiformis DSM 16608]
 gi|324988019|gb|EGC19989.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
           multiformis DSM 16608]
          Length = 657

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 281/650 (43%), Positives = 400/650 (61%), Gaps = 16/650 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N +N ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAENQENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I V++N D S TV D+GRGIP D HK+   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCKNIEVSINEDNSVTVEDDGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALSS +K ++ R+G IY+  +  G    P+ V G   + TGT   F P +
Sbjct: 120 LHGVGVSCVNALSSHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDA 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235
            IF+   F +D +  R+REL++LN+ ++I+L D R    + + R      K G++ FV Y
Sbjct: 179 GIFTTTVFQWDIVARRMRELAYLNAGIKITLSDLRPDPETGKTRTEVFHAKDGLKEFVRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +DRH++ L    I ++  + NI I++A+ +N  Y EN+  + NNI   +GGTHL G R+A
Sbjct: 239 VDRHRQHLFDDVIYLKTEKQNIPIEVAVMYNTDYTENIHSYVNNINTIEGGTHLQGFRTA 298

Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LTR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SE
Sbjct: 299 LTRTLKAYADNDPQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSE 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+  V + LS +LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK V+    LP
Sbjct: 359 VSGAVQQAVGEALSNYLEEHPNEAKLICNKVILAATARVAARKARESVQRKNVMSGGGLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ +  ++  +
Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478

Query: 472 QEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + +  +I ++G   G +       + +KLRY KIIIMTDADVDG+HI TL++T F+R MP
Sbjct: 479 ESVMNIIQSIGVRFGVEDEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            +I  G LYI  PPLY  T  K  +Y   ++  + +L       E      ++      +
Sbjct: 539 KVIEQGHLYIATPPLYKCTYKKVSEYCYTDQQRQAFLDKYGNGVEDGKTIHTQRYKGLGE 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           +         +D   +       +   +   I  +   +  +     +  
Sbjct: 599 MNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEK 648



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 56/71 (78%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I  QRYKGLGEMN  QLWETT++P TR L +V I +A+ AD++FS LMGD+VEPRREF
Sbjct: 586 KTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREF 645

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 646 IEKNATYANID 656


>gi|296452676|ref|ZP_06894367.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
           difficile NAP08]
 gi|296880071|ref|ZP_06904040.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
           difficile NAP07]
 gi|296258458|gb|EFH05362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
           difficile NAP08]
 gi|296428938|gb|EFH14816.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
           difficile NAP07]
          Length = 633

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 295/583 (50%), Positives = 401/583 (68%), Gaps = 3/583 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A  IQ+L+GL+AV+KRP MYIG T    GLHH++YEV+DN+IDE+L+GY   I V
Sbjct: 2   KQEYGASQIQVLEGLEAVRKRPGMYIGSTS-PRGLHHLVYEVVDNSIDEALQGYCSDIYV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N DGS  V DNGRGIP ++H + G S  E ++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  SINEDGSVLVKDNGRGIPVEIHPKTGKSTLETVLTNLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS W+   +   G IY+ ++  G+  + L V G + +D GT + F+P   IF   +
Sbjct: 121 VVNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGES-HDKGTMIQFMPDETIFDEIE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+TL++RLRELSFLN  ++I   DKR  + +     Y GG+  ++ YL++ +  +   
Sbjct: 180 FKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKEFHYTGGLVEYIKYLNKSRTGIHDD 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            + I    D+  ++LAM++ DGY EN+  F NNI   +GG+HLSG ++ALT+ +  Y ++
Sbjct: 240 IVYIDKKVDDCFVELAMQYTDGYTENIYSFANNINTHEGGSHLSGFKAALTKTVNDYAKR 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K++  +++G+D REG T+V+S+K+P+P+F  QTK KL +S +R +V+S   D L +
Sbjct: 300 NKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDSVTVDELGS 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P+ A+IIV K L A   R+AA++AR+LTRRK VL+  SLPGKLADC+E+DP KSE
Sbjct: 360 FLEENPVTARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDPAKSE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +FLVEGDSAGGSAKQGR R +QAILPLRGKILNVE++R D++LSS EI  +ITA G GIG
Sbjct: 420 IFLVEGDSAGGSAKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGIG 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI+K RYHKIIIMTDADVDGAHIRTLLLTFFFR M  LI  G++Y  +PPLY +T+
Sbjct: 480 ED-FDIDKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQPPLYKVTK 538

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            K   YV  ++ L   L     +          G ++   L  
Sbjct: 539 QKKEHYVYSDKELNILLDEIGRNGVELQRYKGLGEMNAEQLWE 581



 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++ N +        + +         ++      V    +    
Sbjct: 450 ILNVEKSRLDRILSSDEIKNMITAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I    +      +  +     +  +     L   +  IGR G+ +QRYK
Sbjct: 510 LTFFFRYMRPLIDEGYVYAAQPPLYKVTKQKKEHYVYSDKELNILLDEIGRNGVELQRYK 569

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLWETT+NP+TR+LL+V + DA+ AD++FS LMGD+V PR+EFI+EN+    
Sbjct: 570 GLGEMNAEQLWETTMNPETRTLLQVTVEDAAIADEVFSMLMGDKVAPRKEFIEENARFVR 629

Query: 800 ALDI 803
            LDI
Sbjct: 630 NLDI 633


>gi|297588052|ref|ZP_06946696.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna
           ATCC 53516]
 gi|297574741|gb|EFH93461.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna
           ATCC 53516]
          Length = 638

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/550 (50%), Positives = 376/550 (68%), Gaps = 4/550 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +N  Y AD I +L+GL+ V+ RP MYIG TD E GLHH++YEV+DN+IDE+L G  D+I
Sbjct: 2   KKNREYTADQITVLEGLEPVRVRPGMYIGSTD-EKGLHHLVYEVVDNSIDEALAGVCDLI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+  D S  V D+G GIP + H + G S  E ++T LHAGGKF+  +Y+ SGGLHGVG
Sbjct: 61  KVTIKKDNSVIVEDDGSGIPVETHPKTGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALS++L  R+KR+G +YE  F  G     L V       TGT + F+P + IF  
Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTELTVIKENVRGTGTTIEFMPDNTIFET 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+ + L  R RE++FLN  V+I   D+R  E  +    Y+GGI++FV Y+++ KKPL 
Sbjct: 181 LNFDKNVLAKRFREMAFLNKGVKIEFADER--EGYKELFHYEGGIKSFVEYINKSKKPLD 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              + I+G +D   +++AM++ + Y+E ++ FTNNI   DGGTH+ G +SALTR +  Y 
Sbjct: 239 HEVMYIEGEKDTTKVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL +SE R+VV+S V + L
Sbjct: 299 RNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHL 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S + EE+P   K I++K L +   R AARRARDL R+K VLD  +LPGKLADC   D + 
Sbjct: 359 SFYFEENPKIVKTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEH 418

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+FLVEGDSAGGSAK GR  + QAILPLRGKILNVE+A  +++L+S EI  +ITA GTG
Sbjct: 419 NEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSNEIKAMITAFGTG 478

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDI+KLRY KI+IMTDADVDGAHIRTLLLTF +R M  L+  G +YI +PPLYGI
Sbjct: 479 IGKN-FDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGI 537

Query: 545 TRGKSLQYVK 554
            +G  +    
Sbjct: 538 IKGVKVMEYC 547



 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 57/75 (76%), Gaps = 3/75 (4%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPR 788
           R  I +QRYKGLGEMNA QLW+TT+NP+ R L++V+I   D ++ D+ F  LMGD VEPR
Sbjct: 563 RSNIKVQRYKGLGEMNAEQLWDTTMNPEHRILIKVEIDGEDENELDNTFDVLMGDNVEPR 622

Query: 789 REFIQENSLPS-ALD 802
           REFI++N++ +  +D
Sbjct: 623 REFIEQNAVYAQNID 637


>gi|302872928|ref|YP_003841561.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B]
 gi|307687881|ref|ZP_07630327.1| DNA gyrase subunit B [Clostridium cellulovorans 743B]
 gi|302575785|gb|ADL49797.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B]
          Length = 636

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 296/591 (50%), Positives = 407/591 (68%), Gaps = 9/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D     SYDA  IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+
Sbjct: 1   MTDK--KQSYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S +V D+GRG+P  +H +    A EVIMT LHAGGKF    YKVSGGL
Sbjct: 58  CKNIDVIIHEDNSISVKDDGRGMPVGMHAKMNRPAVEVIMTILHAGGKFGGGGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS    + +  +G I+   F  G +   L V G    + GTEV F P  +
Sbjct: 118 HGVGASVVNALSETCIVTVSIDGKIHRQEFHRGNVATELEVIGETE-EHGTEVFFTPDHE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F+YDTL  RLREL+FLN  + IS+ D+R+ +    +  Y GGI++FVSYL+R+K
Sbjct: 177 IFETLEFDYDTLVQRLRELAFLNKGINISIEDRRNDKS--DSFHYDGGIKSFVSYLNRNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L   PI I+G +++I +++A+++ND Y EN+  F NNI   +GGTHL+G ++A+TR I
Sbjct: 235 EALFPEPIYIEGIQNDILVEIALQYNDTYQENIFSFANNIDTAEGGTHLAGFKNAMTRVI 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K++ +++ G+D REG T+++S+K+P+P F  QTK KL +SEVR +V+S +
Sbjct: 295 NDYARKFGFLKENDKNLSGEDVREGLTAIISVKIPEPEFEGQTKTKLGNSEVRGIVDSIL 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              +S +LEE+P   KIIV K L AS  R+AA++AR+LTRRK +L+  SLPGKLADCS +
Sbjct: 355 GGSVSTFLEENPSVGKIIVDKALTASRAREAAKKARELTRRKSILESTSLPGKLADCSSK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + E+++VEGDSAGGSAKQGR+R  QAILPLRGKI+NVE+ R DK+L S  I ++ITA
Sbjct: 415 DPSECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGSDTIRSMITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG+D FD++KLRYH+IIIMTDADVDGAHIRTLLLTFF+R M  +I  G +YI +PP
Sbjct: 475 FGAGIGKD-FDLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRYMRDMIEKGHVYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRN 589
           LY ++R K   Y  +++ L+D L +     +  +       G +    L +
Sbjct: 534 LYKVSRNKKEWYAYNDDELKDILKDIGGKDNSTVIQRYKGLGEMDAQQLWD 584



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 14/238 (5%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
               +   + +  I + D         +  +             +E+  +  +   ++ +
Sbjct: 410 DCSSKDPSECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGSDTIR 469

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
            +  +  + +    +    +  +           ++      V    +      F +   
Sbjct: 470 SMITAFGAGIGKDFDLDKLRYHR-----------IIIMTDADVDGAHIRTLLLTFFYRYM 518

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMN 746
              I    +      +  +  N  +        L D +  IG K  S  +QRYKGLGEM+
Sbjct: 519 RDMIEKGHVYIAQPPLYKVSRNKKEWYAYNDDELKDILKDIGGKDNSTVIQRYKGLGEMD 578

Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           A QLW+TT++P+ R LL+V + +A  AD++F+ LMG++VEPRREFIQEN+     LD+
Sbjct: 579 AQQLWDTTMDPEHRLLLKVDMGEAMMADEIFTILMGEKVEPRREFIQENAKNVVNLDV 636


>gi|78211642|ref|YP_380421.1| DNA gyrase subunit B [Synechococcus sp. CC9605]
 gi|78196101|gb|ABB33866.1| DNA gyrase, B subunit [Synechococcus sp. CC9605]
          Length = 655

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 291/661 (44%), Positives = 406/661 (61%), Gaps = 20/661 (3%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MSDASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V L  DGS +VSDNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDRIVVVLGEDGSASVSDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L           +TGT V F 
Sbjct: 120 LHGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGVLASESQPAAESGETGTTVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229
           P  +IF+    F+Y TL  RLREL++LN  V+I   D+R         P E T FY+GGI
Sbjct: 180 PDLEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDGEGNPHEETYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y+++ K  L    I +   +D + ++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVAYMNKEKDALHPDIIYVNSEKDGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++ +K    K+   ++ G++ REG T+VLS+K+P+P F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V++ V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDNLVGEALSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD+  LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+  Y  +E  L+  L                 G +    L
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGEKANYTIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                    +D   +       +  +E   I  +   +             +  L+  A 
Sbjct: 600 WET-----TMDPTTRTMKRVEIEDALEADRIFTILMGDKV-APRREFIETHSAELDMAAL 653

Query: 648 K 648
            
Sbjct: 654 D 654



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFS 694
           +K+       A  +         + D+   R  R V      ++G+ I +    +   + 
Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 536

Query: 695 NRIEENYL-----TILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747
             + E          L  +  G           L  T+   G K   ++QR+KGLGEM  
Sbjct: 537 KELVEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGEKANYTIQRFKGLGEMMP 596

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803
            QLWETT++P TR++ RV+I DA +AD +F+ LMGD+V PRREFI+ +S     +ALDI
Sbjct: 597 KQLWETTMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETHSAELDMAALDI 655


>gi|33241245|ref|NP_876187.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238775|gb|AAQ00840.1| DNA gyrase B subunit [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 658

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 282/636 (44%), Positives = 395/636 (62%), Gaps = 18/636 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +     ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNA+DE+L G+ 
Sbjct: 6   TVQKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNAVDEALAGHC 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V L  DGS ++SDNGRGIPTD+H + G SA E ++T LHAGGKF    YKVSGGLH
Sbjct: 65  NEIVVVLCSDGSASISDNGRGIPTDVHPKTGKSALETVLTVLHAGGKFGSGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFLPS 178
           GVGVSVVNALS W+++ ++R+G+I+   F  G     L  T         TGT+V F P 
Sbjct: 125 GVGVSVVNALSEWVEVTVRRQGHIHNQRFERGAPIGNLRSTKQPVSEKKLTGTKVNFKPD 184

Query: 179 SDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEA 231
           +DIF+    F+Y  L  RLREL++LN  V+I   D+R        +  E   FY+GGI+ 
Sbjct: 185 TDIFTTGIVFDYSILSSRLRELAYLNGGVKIVFRDERQSVSDKEEKAYEEVYFYEGGIKE 244

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +V+Y++  K  L    I +   ++ + ++ A++W  D Y +++L F NNI   DGGTH+ 
Sbjct: 245 YVAYMNSEKDALHPEIIYVNSEKEGVQVEAALQWCIDAYSDSILGFANNIRTVDGGTHIE 304

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GL++ LTR + S+  K    K    ++ G++ REG T VLS+K+P+P F  QTK KL ++
Sbjct: 305 GLKTVLTRTLNSFARKRGKRKDGDSNLAGENIREGLTVVLSVKVPEPEFEGQTKTKLGNT 364

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR +V+S V + L+ +LE +P    +I++K + A    +AARRAR+L RRK VL+  +L
Sbjct: 365 EVRGIVDSLVGESLAQYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESTTL 424

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  
Sbjct: 425 PGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 484

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           + EI  LIT LG GI  + F +  LRYH+++IMTDADVDGAHIRTLLLTFF+R    L+ 
Sbjct: 485 NTEIQALITGLGLGIKGEDFSLKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVE 544

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            G++YI  PPLY + RGK+  Y  +E  L+  + +               G +    L  
Sbjct: 545 GGYVYIACPPLYKVERGKNHTYCYNEGDLQKTITSFGEKANYTIQRFKGLGEMMPKQLWE 604

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
                  +D   +       +  +E   I  +   +
Sbjct: 605 T-----TMDPSTRMMKRVEIEDALEADRIFTILMGD 635



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFS 694
           +K+       A  +         +  +   R  R V      ++G+ I +    +   + 
Sbjct: 480 AKIYKNTEIQALITGLGLGIKGEDFSLKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 539

Query: 695 NRIEENYL-----TILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747
             + E          L  +  G           L  TI S G K   ++QR+KGLGEM  
Sbjct: 540 KELVEGGYVYIACPPLYKVERGKNHTYCYNEGDLQKTITSFGEKANYTIQRFKGLGEMMP 599

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            QLWETT++P TR + RV+I DA +AD +F+ LMGD+V PRREFI+ +     LD
Sbjct: 600 KQLWETTMDPSTRMMKRVEIEDALEADRIFTILMGDKVAPRREFIETH--SVELD 652


>gi|260436552|ref|ZP_05790522.1| DNA gyrase, B subunit [Synechococcus sp. WH 8109]
 gi|260414426|gb|EEX07722.1| DNA gyrase, B subunit [Synechococcus sp. WH 8109]
          Length = 655

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 292/661 (44%), Positives = 406/661 (61%), Gaps = 20/661 (3%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MSDASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V L  DGS  VSDNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDRILVVLGEDGSAAVSDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L           +TGT V F 
Sbjct: 120 LHGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGELASESQPAAESGETGTTVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229
           P  +IF+    F+Y TL  RLREL++LN  V+I   D+R        +P E T FY+GGI
Sbjct: 180 PDLEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDEEGKPHEETYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y+++ K  L    I +   +D + ++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVAYMNKEKDALHPEIIYVNSEKDGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++ +K    K+   ++ G++ REG T+VLS+K+P+P F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V++ V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDNLVGEALSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD+  LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+  Y  +E  L+  L                 G +    L
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGEKANYTIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                    +D   +       +  IE   I  +   +             +  L+  A 
Sbjct: 600 WET-----TMDPTTRTMKRVEIEDAIEADRIFTILMGDKV-APRREFIETHSAELDMAAL 653

Query: 648 K 648
            
Sbjct: 654 D 654



 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 11/179 (6%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFS 694
           +K+       A  +         + D+   R  R V      ++G+ I +    +   + 
Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 536

Query: 695 NRIEENYL-----TILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747
             + E          L  +  G           L  T+   G K   ++QR+KGLGEM  
Sbjct: 537 KELVEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGEKANYTIQRFKGLGEMMP 596

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803
            QLWETT++P TR++ RV+I DA +AD +F+ LMGD+V PRREFI+ +S     +ALDI
Sbjct: 597 KQLWETTMDPTTRTMKRVEIEDAIEADRIFTILMGDKVAPRREFIETHSAELDMAALDI 655


>gi|116071704|ref|ZP_01468972.1| DNA topoisomerase IV subunit B [Synechococcus sp. BL107]
 gi|116065327|gb|EAU71085.1| DNA topoisomerase IV subunit B [Synechococcus sp. BL107]
          Length = 655

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 293/661 (44%), Positives = 407/661 (61%), Gaps = 20/661 (3%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD  +  + Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNA+DE+L G
Sbjct: 1   MSDASKVQNEYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNAVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D ITV L  DGS +V+DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDRITVILGADGSASVTDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL--VVTGSAGN-DTGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L       A   +TGT V FL
Sbjct: 120 LHGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGSLLSESQSEAEQGETGTTVCFL 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229
           P   IF+    F+Y TL  RLREL++LN  VQI   D+R        +P E   FY+GGI
Sbjct: 180 PDLQIFTGGIVFDYATLSARLRELAYLNGGVQIVFRDEREASLSDAGDPHEEIYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y+++ K  L    I +   +D + ++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVAYMNKAKDALHPDIIYVNSEKDGVQVEAALQWCADAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++ +K    K    ++ G++ REG T+VLS+K+P+P F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKDADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V++ V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDNLVGEALSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD   LRYH+++IMTDADVDGAHIRTL+LTFF+R    L
Sbjct: 480 YKNTEIQALITALGLGIKGEEFDQKSLRYHRVVIMTDADVDGAHIRTLILTFFYRYKREL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+  Y  +E  L+  L     + +         G +    L
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNESDLQKTLKGFGENAKYTIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                    +D   +       +  +E   I  +   +             +  L+  A 
Sbjct: 600 WET-----TMDPSTRMMKRIEIEDALEADRIFTILMGDKV-APRREFIETHSKELDMAAL 653

Query: 648 K 648
            
Sbjct: 654 D 654



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +            +  I  +   +  +    +    L   L  +  K E+    S+    
Sbjct: 452 QGRDRRFQAILPLRGKILNIEKTDDSKIYKNTEIQALITALG-LGIKGEEFDQKSLRYHR 510

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
           +++      V    +      F +  K + +    I      +  +    +         
Sbjct: 511 VVI-MTDADVDGAHIRTLILTFFYRYKRELVEGGYIYIACPPLYKVERGKNHTYCYNESD 569

Query: 722 LLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           L  T+   G     ++QR+KGLGEM   QLWETT++P TR + R++I DA +AD +F+ L
Sbjct: 570 LQKTLKGFGENAKYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRIEIEDALEADRIFTIL 629

Query: 781 MGDEVEPRREFIQENSLP---SALDI 803
           MGD+V PRREFI+ +S     +ALDI
Sbjct: 630 MGDKVAPRREFIETHSKELDMAALDI 655


>gi|295402119|ref|ZP_06812078.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109156|ref|YP_003987472.1| DNA gyrase subunit beta [Geobacillus sp. Y4.1MC1]
 gi|294975802|gb|EFG51421.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214257|gb|ADP72861.1| DNA gyrase, B subunit [Geobacillus sp. Y4.1MC1]
          Length = 640

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 299/592 (50%), Positives = 402/592 (67%), Gaps = 7/592 (1%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+ +     +YDA  IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE+L G
Sbjct: 1   MTMEQKVEHTYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+  DGS TV+DNGRGIP D+ ++ G  A EVIMT LHAGGKF    YKVSGG
Sbjct: 60  YCTEINVTIEKDGSITVTDNGRGIPVDIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS  L++ + R+G I+   +  G+    L V G   + TGT V F P  
Sbjct: 120 LHGVGASVVNALSEELEVYVHRDGKIHYQKYQRGVPCTDLQVVGET-DRTGTTVHFKPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    F+Y+TL  RLREL+FLN  ++I+L DKR    +     Y+GGI+++V +L+R
Sbjct: 179 EIFTETTEFDYETLATRLRELAFLNRGLKITLEDKRVENRKNE-YCYEGGIQSYVKHLNR 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI I G RD I +++A ++ND Y  N+  F NNI   +GGTH SG + ALTR
Sbjct: 238 TREVLHEEPIYIIGERDGIYVEIAFQYNDSYSSNIYSFVNNIHTHEGGTHESGFKMALTR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K +  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++
Sbjct: 298 IINDYARKQQIFKDNDPNLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDA 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS
Sbjct: 358 VFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCS 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+LS+ E+  +I
Sbjct: 418 SKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGIG+D FDI K RYHKIIIMTDADVDGAHIRTLLLTFF+R M   I  G++YI +
Sbjct: 478 TALGTGIGED-FDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYVYIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY I + K ++Y  ++  LE  L     + +         G ++   L  
Sbjct: 537 PPLYKIEQDKQVRYAYNDRQLEKILAELPENPKPTIQRYKGLGEMNPEQLWE 588



 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 143/378 (37%), Gaps = 51/378 (13%)

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII--------IMTDADVD--GAHIRTLLLTF 520
           S  I + +  + T  G       K+   +II        I  D D +  G  +R  L   
Sbjct: 269 SSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKDNDPNLTGEDVREGLTAI 328

Query: 521 FFRQMPSLIHNGF----------------LYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
              + P+    G                 ++  +   + +      + + ++  +     
Sbjct: 329 VSIKHPAPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIARKIVEKGMMAARAR 388

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
             +          S   IS  +L   + D    D  I + Y     +    A      + 
Sbjct: 389 LAAKKARELTRRKSALEIS--NLPGKLADCSSKDPSISELYVVEGDSAGGSAKQGRDRHF 446

Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVL 677
           ++   +   + +    RL+ I   +E          G   + DI   R  + +      +
Sbjct: 447 QAILPLRGKIINVEKARLDKILSNNEVRAIITALGTGIGEDFDITKARYHKIIIMTDADV 506

Query: 678 EGSSIFS----FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRK 732
           +G+ I +    F  +Y R F  R               DK          L+ I +    
Sbjct: 507 DGAHIRTLLLTFFYRYMREFIERGYVYIAQPPLYKIEQDKQVRYAYNDRQLEKILAE--- 563

Query: 733 GI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
            +      ++QRYKGLGEMN  QLWETT+NP+TR+LL+V + DA +AD+ F  LMGD+VE
Sbjct: 564 -LPENPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIEADETFEILMGDKVE 622

Query: 787 PRREFIQENSLPS-ALDI 803
           PRR+FI+EN+     LDI
Sbjct: 623 PRRQFIEENARYVKNLDI 640


>gi|42525521|ref|NP_970619.1| DNA gyrase, B subunit [Treponema denticola ATCC 35405]
 gi|4033400|sp|O87545|GYRB_TREDE RecName: Full=DNA gyrase subunit B
 gi|3676691|gb|AAC62070.1| DNA gyrase subunit B [Treponema denticola]
 gi|41815532|gb|AAS10500.1| DNA gyrase, B subunit [Treponema denticola ATCC 35405]
 gi|325475358|gb|EGC78543.1| DNA gyrase subunit B [Treponema denticola F0402]
          Length = 638

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 280/637 (43%), Positives = 412/637 (64%), Gaps = 13/637 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S+Y A++I +LKGL+AV+KRP MYIG T G  GLHH++YEV+DN IDE++ G+ D I
Sbjct: 1   MTKSNYSANNITVLKGLEAVRKRPGMYIGST-GPDGLHHLVYEVVDNCIDEAMAGFCDKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  +    V DNGRGIP D+H  E ISA E+++TRLHAGGKF++ SYKVSGGLHGVG
Sbjct: 60  LVVLEPNDIVRVEDNGRGIPVDIHPTEKISALELVLTRLHAGGKFDKGSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS W++ ++ ++G  +   F  G +  P+   G     +GT + +     IF+ 
Sbjct: 120 VSVVNALSVWMEAKVYKDGFEHYAKFEKGSILEPVKKIGETE-KSGTVIRWAVDPSIFTE 178

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +N++ L  RLREL+FLNS + I++ D+R   P+E+T  ++GGI  FVSYL+  K+  
Sbjct: 179 TTVYNFEVLATRLRELAFLNSKISITMRDERLSTPKEVTFAFEGGISQFVSYLNESKQVF 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            +SP+ I+G +++I  ++A+++NDGY+EN+L F N+I  ++GGTHL G ++ALTR +  +
Sbjct: 239 PKSPVFIEGEKNDILCEVAIQYNDGYNENLLSFVNDINTREGGTHLEGFKTALTRVMNDF 298

Query: 304 VEKSFGSK---KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           ++K          +  + G+D R G T+++S+K+P+P+F  QTK KL +S+VR +V+SFV
Sbjct: 299 LKKYPKLVKKMDKEEKLTGEDVRAGLTAIVSVKVPEPQFEGQTKTKLGNSDVRGIVDSFV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ + E++P E + +++K +  +  R AARRA++ TRRK  LD   LPGKLADCS +
Sbjct: 359 NEKLTLFFEQNPNEVEKVLEKCVAEAAARIAARRAKEATRRKSGLDSFGLPGKLADCSLK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP+  E+++VEGDSAGGSAK+GR  + QAILPL GK+LNVE+ R DK+++++++  +I  
Sbjct: 419 DPESCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVVNNEKLQPIIAT 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D F+I KLRYHK+IIM DADVDG+HIRTLLLTFFFR MP +I  G +Y+  PP
Sbjct: 479 LGTGIGKD-FNIEKLRYHKVIIMADADVDGSHIRTLLLTFFFRYMPQVIEKGHVYLAMPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY I+  K   YV +++  +  L      +          G +    L         +D 
Sbjct: 538 LYKISHNKKEWYVYNDDERDSVLDQIGRGNNAAVQRYKGLGEMDGTQLWET-----TMDP 592

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +          +E   I      E  +     +  
Sbjct: 593 ARRKMMRVTLPDAVEADRIFSTLMGEEVEPRRKFIEE 629



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 3/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    KL   +  +     K ++        ++      V    +    
Sbjct: 455 MLNVEKTRLDKVVNNEKLQPIIATLGTGIGKDFNIEKLRYHKVIIMADADVDGSHIRTLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738
             F F    + I    +      +  +  N  +  +       D++     +G   ++QR
Sbjct: 515 LTFFFRYMPQVIEKGHVYLAMPPLYKISHNKKEWYVYNDDER-DSVLDQIGRGNNAAVQR 573

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+ +QLWETT++P  R ++RV + DA +AD +FS LMG+EVEPRR+FI+EN++ 
Sbjct: 574 YKGLGEMDGTQLWETTMDPARRKMMRVTLPDAVEADRIFSTLMGEEVEPRRKFIEENAVY 633

Query: 799 SALDI 803
           + LD+
Sbjct: 634 ANLDV 638


>gi|313900991|ref|ZP_07834481.1| DNA gyrase, B subunit [Clostridium sp. HGF2]
 gi|312954411|gb|EFR36089.1| DNA gyrase, B subunit [Clostridium sp. HGF2]
          Length = 647

 Score =  598 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 282/636 (44%), Positives = 407/636 (63%), Gaps = 12/636 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  + SY AD IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L G+A 
Sbjct: 13  EDKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGFAT 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  +    V DNGRG+PT + ++ GIS  E I T LHAGGKF   +YKVSGGLHG
Sbjct: 72  DIEITIEKNNIIRVEDNGRGMPTGIVEKTGISGVETIFTVLHAGGKFGGGAYKVSGGLHG 131

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALS WL++ + + G+ + + F + G    PL +   +    G+ V F    +I
Sbjct: 132 VGASVVNALSEWLEVNVHQNGHEFFLRFEDGGKATGPLKIINDSE-KHGSIVRFKADPEI 190

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F     +++DTL  R+R+L+FLN S+++ L D+R  EP+ I   Y GGI  +V YL+++K
Sbjct: 191 FQETQEYDFDTLNARIRQLAFLNKSIRLVLCDEREAEPKRIEYKYDGGIRQYVEYLNKNK 250

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +  + ++G  D I  ++AM++NDGY  ++  F NNI   +GGTH  G R ALTR I
Sbjct: 251 TPLHEEVVYVEGIEDGILAEIAMQYNDGYIPSIYSFCNNINTMEGGTHEDGFRLALTRII 310

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y  +    K    ++ GDD REG T+++S+K PDP++  QTK KL +SEVR +V S +
Sbjct: 311 NAYAREQGMIK-KDETLAGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIVSSIL 369

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +  E+P  AKIIV K + AS  R AA++AR+LTRRK  L+I SLPGKLADCS +
Sbjct: 370 GEQLDRFFMENPETAKIIVDKAILASKARLAAKKARELTRRKSALEITSLPGKLADCSSK 429

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  + E+++VEGDSAGGSAKQGR+ + QAILPLRGKILNVE+AR  ++  + EI ++ITA
Sbjct: 430 DASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKARLQRIFENNEIRSMITA 489

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG++  D++KLRYHKIIIMTDADVDGAHI TL+LTFF+R +  +I  G++YI  PP
Sbjct: 490 FGCGIGEEM-DVSKLRYHKIIIMTDADVDGAHICTLMLTFFYRYLRPIIEGGYVYIAMPP 548

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           L+ + +G  ++YV  EE +E    +   +  ++ +    G ++   L         +D  
Sbjct: 549 LFKVAKGNRVEYVYKEEEVETVRASMGENVNVQRY-KGLGEMNPEQLWET-----TMDPA 602

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +     +    +E   I  +   E  +     +  
Sbjct: 603 FRTLKQVNIDDAMEADSIFEMLMGEEVEPRRDFIQE 638



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 1/124 (0%)

Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRY 739
            + +F  +Y R I         +  L  +  G++++       ++T+ +   + +++QRY
Sbjct: 524 LMLTFFYRYLRPIIEGGYVYIAMPPLFKVAKGNRVEYVYKEEEVETVRASMGENVNVQRY 583

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QLWETT++P  R+L +V I DA +AD +F  LMG+EVEPRR+FIQEN++ +
Sbjct: 584 KGLGEMNPEQLWETTMDPAFRTLKQVNIDDAMEADSIFEMLMGEEVEPRRDFIQENAIYA 643

Query: 800 ALDI 803
            LDI
Sbjct: 644 TLDI 647


>gi|291547631|emb|CBL20739.1| DNA gyrase subunit B [Ruminococcus sp. SR1/5]
          Length = 641

 Score =  598 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 296/586 (50%), Positives = 394/586 (67%), Gaps = 4/586 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +N+ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+   I 
Sbjct: 4   ENTEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGFCTEIH 62

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V +N D S TV+DNGRGIP  ++ + GI A EV+ T LHAGGKF    YKVSGGLHGVG 
Sbjct: 63  VDINPDNSITVTDNGRGIPVGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGA 122

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184
           SVVNALS WL++ I REG  Y+  +  G    PL V G      +GT+V FLP  +IF  
Sbjct: 123 SVVNALSEWLEVTIYREGKEYKQRYERGKTMYPLKVVGDCDPGLSGTKVYFLPDKEIFEE 182

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             ++YD L+ RLRE++FL   ++I L DKR  + RE    Y+GGI  FVSYL+R K+ L 
Sbjct: 183 TVYDYDILKQRLREMAFLTKGLRIVLEDKREGQEREKVFHYEGGIREFVSYLNRSKEALY 242

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I  +G +D +S+++A++ ND Y EN   F NNI   +GGTH++G R+A+T     Y 
Sbjct: 243 PEIIYCEGEKDGVSVEVALQHNDSYTENTYGFVNNINTPEGGTHITGFRNAITNTFNDYA 302

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K  + ++ GDD REG T+++S+K+ +P+F  QTK+KL +SE R  V+S V+  L
Sbjct: 303 RKNKLLKDSEPNLSGDDIREGLTAIVSVKIENPQFEGQTKQKLGNSEARGAVDSVVSKQL 362

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +LE++P  AK  V+K + A   R+AAR+ARDLTRRK  LD  SLPGKLADCS+++P+ 
Sbjct: 363 EIFLEQNPAVAKATVEKSVLAQRAREAARKARDLTRRKSALDSMSLPGKLADCSDKNPEN 422

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E+++VEGDSAGGSAK  R+R  QAILPLRGKILNVE+AR DK+  ++EI  +ITA GTG
Sbjct: 423 CEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDKIYGNKEIKAMITAFGTG 482

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY +
Sbjct: 483 IHED-FDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKV 541

Query: 545 TRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
            + K + Y  D++ L + L                 G +    L  
Sbjct: 542 EKNKKVWYAYDDDELNNILTEIGRDGNNKIQRYKGLGEMDAEQLWE 587



 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y       L  
Sbjct: 481 TGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYK 540

Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        L + +  IGR G + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 541 VEKNKKVWYAYDDDELNNILTEIGRDGNNKIQRYKGLGEMDAEQLWETTMDPEKRILLRV 600

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + +A+  + D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 601 TMDEAATSEIDLTFTTLMGDKVEPRREFIEENARFVKNLDI 641


>gi|300774234|ref|ZP_07084101.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300758913|gb|EFK55742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 652

 Score =  598 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 287/603 (47%), Positives = 406/603 (67%), Gaps = 16/603 (2%)

Query: 1   MSDNIQNSS-YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +N+S Y AD+IQ+L+GL+AV+KRPSMYIGDT G  GLHH++YEV+DN+IDE++ G
Sbjct: 1   MSEEKKNTSTYSADNIQVLEGLEAVRKRPSMYIGDT-GVKGLHHLVYEVVDNSIDEAVAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y + I VT++   S +V DNGRGIPT ++K+E  SA E++MT LHAGGKF++ +YKVSGG
Sbjct: 60  YCNDILVTIHEGNSISVQDNGRGIPTGINKKENKSALELVMTVLHAGGKFDKDTYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ L   + R+G I++  +  G     +   G +   TGT VTF P  
Sbjct: 120 LHGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKAIGESE-RTGTTVTFFPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVS 234
           +IF++   +NYDTL +RLREL+FLN  ++++++D+R        R+   F +GG++ FV 
Sbjct: 179 EIFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREILDDGSFRKDVFFSEGGLQEFVK 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD +++ L+ +PI ++G +  + ++LA+++ND Y ENV  + NNI   +GG+H++G R 
Sbjct: 239 FLDGNRQSLISNPIYVEGIKQGVPVELALQYNDTYSENVHSYVNNINTIEGGSHVAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR +  Y E S   K  K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV  
Sbjct: 299 GLTRTLKKYAEDSGLLKNLKVEIAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V + LS +LEE+P EAK+IV+KV+ A+  R AAR+AR++ +RK V+  + LPGKL
Sbjct: 359 AVDVAVGEILSTYLEENPREAKMIVQKVVIAAQARAAARKAREMVQRKTVMGGSGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS+ DP K E+F VEGDSAGG+AKQGR R+ QAI+PLRGKILNVE+A   K+  ++EI
Sbjct: 419 ADCSDNDPHKCEIFFVEGDSAGGTAKQGRDRKFQAIMPLRGKILNVEKAMEHKIYENEEI 478

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TALG  +G           KLRYHKI+IMTDADVDG+HI TL+LTF+FR M  LI 
Sbjct: 479 KNMFTALGVSVGTADDAKALNLEKLRYHKIVIMTDADVDGSHIATLILTFYFRYMKELIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL----SEEIELFCDSKGVISKND 586
           NG++YI  PPLY + +GK  +Y   EE     +                    G ++   
Sbjct: 539 NGYVYIATPPLYLVKKGKESEYAWTEEQRLQAIQRLKGAGKEDSVHVQRYKGLGEMNAEQ 598

Query: 587 LRN 589
           L +
Sbjct: 599 LWD 601



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 9/123 (7%)

Query: 689 YKRIFSNRIEENYL----TILSLICNGDKIKITGPCS----LLDTIFSIGR-KGISMQRY 739
           Y R     IE  Y+      L L+  G + +           +  +   G+   + +QRY
Sbjct: 529 YFRYMKELIENGYVYIATPPLYLVKKGKESEYAWTEEQRLQAIQRLKGAGKEDSVHVQRY 588

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA QLW+TT+NP+ R+L +V I +A++ D +FS LMGDEV PRREFI++N+  +
Sbjct: 589 KGLGEMNAEQLWDTTMNPEHRTLRQVTIDNAAECDRIFSMLMGDEVAPRREFIEKNARYA 648

Query: 800 ALD 802
            +D
Sbjct: 649 KID 651


>gi|297570618|ref|YP_003696392.1| DNA gyrase subunit beta [Arcanobacterium haemolyticum DSM 20595]
 gi|296930965|gb|ADH91773.1| DNA gyrase, B subunit [Arcanobacterium haemolyticum DSM 20595]
          Length = 682

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 276/648 (42%), Positives = 401/648 (61%), Gaps = 25/648 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           Q + Y+A +I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GYA  IT
Sbjct: 20  QGTEYNASNITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYASEIT 78

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  +G   V D+GRGIP D+H  EG++A +V+MT LHAGGKF   SY VSGGLHGVG+
Sbjct: 79  VTLLDNGGVKVEDDGRGIPVDIHPTEGVAAVQVVMTVLHAGGKFGNGSYAVSGGLHGVGI 138

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ +   ++R+G ++ +S+ NG+   PL   G   + TGT  TF P++DIF   
Sbjct: 139 SVVNALSTRMDTEVRRDGYVWRISYENGVPVAPLEQ-GEPTDKTGTTQTFWPNADIFETV 197

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----------------SPEPREITMFYKGG 228
           +F++DTL+ R  +++FLN S++I+LID+R                   +  ++T  Y  G
Sbjct: 198 EFDFDTLRQRFHQMAFLNKSLKITLIDERETAVVEGDEVTGEDDATETKHTQVTYQYDNG 257

Query: 229 IEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +  +V++    +  +P+ + PI  +       IS+++AM+W + Y E++  F N I   +
Sbjct: 258 LHDYVTHLIKTKKSEPVHEHPIYFEAEDKERVISVEVAMQWTNAYSESLHTFANTINTTE 317

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH  G R+ALT  I  Y       K+   ++ GDD REG T+V+S+K+ +P+F  QTK
Sbjct: 318 GGTHEEGFRTALTSIINKYARDKAILKEKDANLTGDDIREGLTAVISVKLGEPQFEGQTK 377

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E R+ V+      L+ WL+ HP E K I++K + A   R AAR+AR+ TRRK V
Sbjct: 378 TKLGNTEARTFVQQTTYAQLTDWLDMHPSEGKEIIRKAMQAQTARLAARKAREATRRKSV 437

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+ A++PGKL DC+ R P++ E+F+VEGDSAGGSA  GR   +QAI+P+RGKILNVE+AR
Sbjct: 438 LESAAMPGKLKDCTSRKPEECEIFIVEGDSAGGSAVNGRDPNHQAIMPIRGKILNVEKAR 497

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D+ LSS  I +LITA GTG+G++ FDI+KLRYHKI+ M DADVDG HI TLLLT  +R 
Sbjct: 498 LDRALSSDSIQSLITAFGTGVGEE-FDIDKLRYHKIVFMADADVDGQHIATLLLTLVYRY 556

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           M  LI +G++Y+  PPLY +    +       +   D  + + L+    L       I +
Sbjct: 557 MRPLIEHGYIYLAMPPLYRLKWTNAEHEYVFSDKERDIKLEEGLAAGKRLPKAEGQGIQR 616

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFI-EQAVISGVFNCESDQEIN 631
                 ++D    D  +        +  I E A     F+    +++ 
Sbjct: 617 YKGLGEMNDHELWDTTMNPETRTLKRVSIGEAAATDESFSVLMGEDVA 664



 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 11/103 (10%)

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRS 761
            + +  +  I      L+   + G++     G  +QRYKGLGEMN  +LW+TT+NP+TR+
Sbjct: 585 YVFSDKERDIK-----LEEGLAAGKRLPKAEGQGIQRYKGLGEMNDHELWDTTMNPETRT 639

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           L RV I +A+  D+ FS LMG++V  RR FIQ N+     LDI
Sbjct: 640 LKRVSIGEAAATDESFSVLMGEDVASRRSFIQRNAHDVRFLDI 682


>gi|158319065|ref|YP_001511572.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139264|gb|ABW17576.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs]
          Length = 636

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 301/587 (51%), Positives = 405/587 (68%), Gaps = 4/587 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D I+   Y A+ IQ+L+GLD V+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY D
Sbjct: 2   DKIKTQEYSAEQIQVLEGLDPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALGGYCD 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D S  V DNGRGIP D+H + G S  E ++T LHAGGKF    YKVSGGLHG
Sbjct: 61  TILVTIKEDDSIEVIDNGRGIPVDVHPQTGKSTLETVLTVLHAGGKFGGGGYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS +L+  IK +G +Y   F  G     + + G    + GT + F P ++IF
Sbjct: 121 VGVSVVNALSEYLEATIKLDGKVYWQRFERGNPVEDIKIIGETK-EKGTTILFKPDAEIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F Y+TL++RLREL+FLN  ++I LIDKR  + +E   +Y GGI  +V YL+++K  
Sbjct: 180 EETVFQYETLEYRLRELAFLNKGIKIVLIDKREGKEQEKVFYYDGGIMEYVKYLNKNKSV 239

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L +  I  +  ++   +++AM++ D Y EN+  + NNI   +GGTHLSG R++LTR +  
Sbjct: 240 LHEKIIHFEKEKETSVVEVAMQYTDTYTENIFSYANNINTHEGGTHLSGFRASLTRIVND 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+   + +G+D REG T+V+S+K+ +P+F  QTK KL +SE+R +VE+ V++
Sbjct: 300 YAKKAGFLKEKDANFLGEDIREGLTAVISVKLTEPQFEGQTKTKLGNSEMRGIVENSVSE 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L A+LEE+P +AKIIV+K L A   R+AA++AR+LTRRKG L+  +LPGKLADCSE+DP
Sbjct: 360 ALEAFLEENPSDAKIIVEKSLRAQRAREAAKKARELTRRKGALESMALPGKLADCSEKDP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SE+++VEG+SAGGSAKQGR R  QAILPLRGKILNVE+AR DKML+S EI  +ITA G
Sbjct: 420 ALSEIYIVEGNSAGGSAKQGRDRSIQAILPLRGKILNVEKARLDKMLNSDEIRNMITAFG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           T IG++ FDI KLRYHKI+IMTDADVDGAHIRTLLLTF FR M  LI  G++YI +PPLY
Sbjct: 480 TSIGEE-FDIEKLRYHKIVIMTDADVDGAHIRTLLLTFLFRFMKPLIERGYIYIAQPPLY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            + +GK  +Y   EE +    +++             G ++   L  
Sbjct: 539 KLKKGKVEEYAYSEEEM-QVKLSEMGGNVDIQRYKGLGEMNPEQLWE 584



 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 81/153 (52%), Gaps = 7/153 (4%)

Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSLICNG 711
              DI   R  + V      ++G+ I +    +  R     IE  Y+      L  +  G
Sbjct: 484 EEFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFLFRFMKPLIERGYIYIAQPPLYKLKKG 543

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
              +       +    S     + +QRYKGLGEMN  QLWETT+NP+TR+ L+V I DA+
Sbjct: 544 KVEEYAYSEEEMQVKLSEMGGNVDIQRYKGLGEMNPEQLWETTMNPETRTFLQVTIEDAA 603

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            AD++F+ LMGD+VEPRREFI++NS     LDI
Sbjct: 604 AADNIFTTLMGDKVEPRREFIEQNSKYVTNLDI 636


>gi|300871637|ref|YP_003786510.1| DNA gyrase subunit B [Brachyspira pilosicoli 95/1000]
 gi|300689338|gb|ADK32009.1| DNA Gyrase B subunit [Brachyspira pilosicoli 95/1000]
          Length = 637

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 282/590 (47%), Positives = 398/590 (67%), Gaps = 6/590 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+      +Y + +IQ+L+GLD V+KRP MYIG T G  GLHH++YEV+DN+IDE++ G+
Sbjct: 1   MA--TGEKTYSSKNIQVLEGLDPVRKRPGMYIGST-GSQGLHHLVYEVVDNSIDEAMAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+       V D+GRGIP D+H +  ISA EV+MT+LHAGGKF+ ++YKVSGGL
Sbjct: 58  CKNIIVTIKKGNIIEVEDDGRGIPVDMHPKLKISALEVVMTKLHAGGKFDNETYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ L   + ++G +Y   +  G+ + P+   G + N TGT+VTF P  +
Sbjct: 118 HGVGVSVVNALSTELIAEVSKDGKLYRQVYHKGVPEEPVKEVGKS-NKTGTKVTFTPDPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++Y  L +RLREL+FLN  ++I+LIDKR  +P     +Y+GGIE F+++L+ +K
Sbjct: 177 IFETTIYDYKILANRLRELAFLNRGIRITLIDKRESKPVSNEFYYEGGIEMFITHLNENK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           K L   PI +  + D   +++AM++ D Y+EN+  + NNI   +GGTHL G R+ALTR  
Sbjct: 237 KTLHDKPIYLHKTEDKTDVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTALTRVY 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           T + +K    KK+K + +G+D REG  +V+S+K+P+P+F  QTK KL ++EVR+V E  V
Sbjct: 297 TDFAKKLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAVTEKLV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +GL+ +  ++P   K I++K++ A+  R+AARRARDL RRK  L+  SLPGKLADCSE+
Sbjct: 357 VEGLNDYFSQNPKVIKAILEKIISAANAREAARRARDLARRKNALESDSLPGKLADCSEQ 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +  K E++LVEGDSAGG+AK GR R  QAILPLRGK+LNVE+AR DK++ +  +  +I A
Sbjct: 417 EVDKCEVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDTDSLKPIIAA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG G+G   FDI+K+RY +IIIM DAD+DG+HIRTLLLTFFFR M  LI  G ++I  PP
Sbjct: 477 LGCGVGAS-FDISKIRYGRIIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPP 535

Query: 541 LYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I+  K    Y   +E  +  L      +         G ++ + L  
Sbjct: 536 LYKISFDKKNFVYAYTDEQRDKILEENKDRKYDIQRYKGLGEMNADQLWE 585



 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 2/82 (2%)

Query: 724 DTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           D I    + +   +QRYKGLGEMNA QLWETT+NP+TR + +V   DA +AD LFS LMG
Sbjct: 556 DKILEENKDRKYDIQRYKGLGEMNADQLWETTMNPETRLMYQVLTEDAEKADQLFSMLMG 615

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           DEV+PRREFI+ N+     LDI
Sbjct: 616 DEVKPRREFIEANAKYVKNLDI 637


>gi|255530774|ref|YP_003091146.1| DNA gyrase subunit B [Pedobacter heparinus DSM 2366]
 gi|255343758|gb|ACU03084.1| DNA gyrase, B subunit [Pedobacter heparinus DSM 2366]
          Length = 652

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 290/603 (48%), Positives = 400/603 (66%), Gaps = 16/603 (2%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+     S+Y AD+IQ+L+GL+AV+KRPSMYIGDT G  GLHH++YEV+DN+IDE+L G
Sbjct: 1   MSEEKDPKSNYSADNIQVLEGLEAVRKRPSMYIGDT-GIKGLHHLVYEVVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD I V +  D S  V DNGRGIPT ++ +E  SA E++MT LHAGGKF++ +YKVSGG
Sbjct: 60  HADTIYVNILKDNSIRVEDNGRGIPTGINTKEQKSALEIVMTVLHAGGKFDKDTYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ LK  + REG I+   +  G     +   G      GT +TF P  
Sbjct: 120 LHGVGVSCVNALSTHLKAEVHREGKIWVQEYNIGKPLYEVKSIGDTDKL-GTIITFTPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVS 234
            IF+    + YDTL  RLRELSFLN  ++++L D+R    + E        +GG++ FV 
Sbjct: 179 TIFTQTTEYRYDTLASRLRELSFLNKGIKLTLTDERETLENGEFLSELFHSEGGLKEFVQ 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD  +  L+  PI ++G ++ I ++LA+++ND Y ENV  + NNI   +GGTH++G R 
Sbjct: 239 FLDGTRPSLIPEPIYVEGIKNGIPVELALQYNDSYSENVHSYVNNINTHEGGTHIAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR + +Y +KS   K  K  + GDD REG T+V+S+K+ +P+F  QTK KL +SEV  
Sbjct: 299 GLTRTLKAYADKSGLLKNVKFEITGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSEVMG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V + L  +LEE+P EA++IV KV+ A+  R AAR+AR++ +RK V+  + LPGKL
Sbjct: 359 AVDIAVGEALGIYLEEYPKEARMIVNKVILAATARAAARKAREMVQRKSVMGGSGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS+ DP+K EL+LVEGDSAGG+AKQGR R  QAILPL+GKILNVE+A   K+  + EI
Sbjct: 419 ADCSDSDPEKCELYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAMEHKIYENDEI 478

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TALG  IG +  D      KLRYHKI+IMTDAD+DG+HI TL+LTFFFR M +LI 
Sbjct: 479 KNMFTALGVSIGTEEDDKALNLAKLRYHKIVIMTDADIDGSHITTLILTFFFRYMKALIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKND 586
            G++YI  PPLY + +GK  +Y  +++  +D +     + + E          G ++   
Sbjct: 539 AGYVYIAAPPLYQVKKGKEFEYCWNDKQRDDAVQRLKGAGKEESVHIQRYKGLGEMNAEQ 598

Query: 587 LRN 589
           L +
Sbjct: 599 LWD 601



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 11/192 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E   E  +    ++ N    +      E+ +K+ + +      +V      +    
Sbjct: 461 ILNVEKAMEHKIYENDEIKNMFTALGVSIGTEEDDKALNLAKLRYHKIVIMTDADIDGSH 520

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSLLDTIFSIGR 731
           +      F F      I +  +       L  +  G + +           +  +   G+
Sbjct: 521 ITTLILTFFFRYMKALIEAGYVY-IAAPPLYQVKKGKEFEYCWNDKQRDDAVQRLKGAGK 579

Query: 732 K-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           +  + +QRYKGLGEMNA QLW+TTLNP TR+L++  I +A++ D  FS LMGDEV PRR+
Sbjct: 580 EESVHIQRYKGLGEMNAEQLWDTTLNPATRTLMQATIENAAECDHTFSMLMGDEVAPRRD 639

Query: 791 FIQENSLPSALD 802
           FI+ N+  + +D
Sbjct: 640 FIERNAKYAKID 651


>gi|113954544|ref|YP_729329.1| DNA gyrase subunit B [Synechococcus sp. CC9311]
 gi|113881895|gb|ABI46853.1| DNA gyrase, B subunit [Synechococcus sp. CC9311]
          Length = 655

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 290/616 (47%), Positives = 409/616 (66%), Gaps = 15/616 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNA+DE+L G
Sbjct: 1   MSEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNAVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + ITV L  DGS  VSDNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCNEITVVLGEDGSAFVSDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L            TGT V F 
Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAAIGSLASEPQPAEEKGLTGTSVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDK------RSPEPREITMFYKGGI 229
           P   IF+V  +F+Y TL  RLREL++LN  V+I   D+      +  +PRE   FY+GGI
Sbjct: 180 PDHQIFTVGIEFDYSTLSARLRELAYLNGGVRIVFRDERQAARDQEGKPREELYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y++  K PL    I +   +D +S++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVAYMNAEKDPLHPEIIYVNSEKDGVSVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++ +K    K+   ++ G++ REG T+VLS+K+P+P F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNTFAKKRGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V++ V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDNLVGESLSQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD+  LRYH+++IMTDADVDGAHIRTL+LTFF+R    L
Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKEL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKND 586
           +  G++YI  PPLY + RGK+  Y  +E+ L+  L    +  +  I+ F     ++ K  
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEQQLQKTLAGFGEKANYNIQRFKGLGEMMPKQL 599

Query: 587 LRNFIDDALKIDKLIK 602
               +D + ++ K ++
Sbjct: 600 WETTMDPSTRMMKRVE 615



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 11/179 (6%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFS 694
           +K+       A  +         + D+   R  R V      ++G+ I +    +   + 
Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQ 536

Query: 695 NRIEENYL-----TILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747
             + E          L  +  G           L  T+   G K   ++QR+KGLGEM  
Sbjct: 537 KELVEGGYIYIACPPLYKVERGKNHTYCYNEQQLQKTLAGFGEKANYNIQRFKGLGEMMP 596

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803
            QLWETT++P TR + RV++ DA +AD +F+ LMGD+V PRREFI+ +S     ++LDI
Sbjct: 597 KQLWETTMDPSTRMMKRVEVQDALEADRIFTILMGDKVAPRREFIETHSADLDMASLDI 655


>gi|332685539|ref|YP_004455313.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
 gi|332369548|dbj|BAK20504.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
          Length = 650

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 292/651 (44%), Positives = 416/651 (63%), Gaps = 10/651 (1%)

Query: 1   MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M++  +N        Y+A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+ID
Sbjct: 1   MTEEEKNMQQQRAEEYNASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+A  I VT+  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    Y
Sbjct: 60  EALAGFATEIRVTIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L+ R+ R G IY   +  G +   L V G   +  GT + 
Sbjct: 120 KVSGGLHGVGSSVVNALSTKLEARVYRNGKIYYQEYHRGNVVADLKVIGDT-DRHGTAIH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F+P  +IF     FN++ L  R+REL+FLN  ++IS+ D R PE      +Y+GGI+++V
Sbjct: 179 FIPDPEIFKETIEFNFEKLATRVRELAFLNRGLKISIEDLRGPETVLRDYYYEGGIKSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K  L   PI ++G +  I+++++M++ DGYH N+L F NNI   +GGTH +G +
Sbjct: 239 GHLNANKDVLFDEPIYVEGEQQEITVEVSMQYTDGYHSNLLSFANNIHTYEGGTHEAGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y +K    K++  ++ G+D REG T V+SIK P+P+F  QTK KL +SEVR
Sbjct: 299 TALTRVINDYAKKQKLMKENDENLTGEDVREGLTCVISIKHPEPQFEGQTKTKLGNSEVR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           +V +   ++    +L E+P   K IV K L AS  R AA+RAR++TRRKG L+I++LPGK
Sbjct: 359 TVTDRLFSEHFGKFLMENPTIGKKIVDKGLLASKARLAAKRAREVTRRKGNLEISNLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+ +K ELF+VEGDSAGGSAKQGR R  QAILP+RGKILNVE+A  DK+L+++E
Sbjct: 419 LADCSSREAEKCELFIVEGDSAGGSAKQGRDRMFQAILPIRGKILNVEKASMDKILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +L TA+GTG G+D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M  ++  G+
Sbjct: 479 IRSLFTAMGTGFGED-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGY 537

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PPLYG+ +GK++ YV+  +  E+ L +   +         +      ++ +    
Sbjct: 538 VYIAQPPLYGVKQGKNITYVQPGKQAEEELSHLMETLPKSPKASVQRYKGLGEMDDHQLW 597

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +D   +          +    I  +   +  +     +        N 
Sbjct: 598 ETTMDPERRLMSRVSVDDAVAADQIFEMLMGDKVEPRRAFIEENAHYVKNL 648



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K        L++T+    +   S+QRYKGLGEM+  QLWETT++P+ R + RV + DA  
Sbjct: 561 KQAEEELSHLMETLPKSPK--ASVQRYKGLGEMDDHQLWETTMDPERRLMSRVSVDDAVA 618

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD +F  LMGD+VEPRR FI+EN+     LDI
Sbjct: 619 ADQIFEMLMGDKVEPRRAFIEENAHYVKNLDI 650


>gi|304383575|ref|ZP_07366034.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
           DSM 16973]
 gi|304335099|gb|EFM01370.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
           DSM 16973]
          Length = 657

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 281/659 (42%), Positives = 393/659 (59%), Gaps = 15/659 (2%)

Query: 1   MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N  + ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++ E +DN+IDE++ G
Sbjct: 1   MAENQTKENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I V +N D S TV D+GRGIP D H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  FCKNIEVIINEDNSITVQDDGRGIPVDEHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALSS +  ++ R+G IY+  +  G    P+ V G      GT   F P +
Sbjct: 120 LHGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVG-TTERRGTRQQFWPDA 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---REITMFYKGGIEAFVSYL 236
            IF+   + +D + +R+REL++LN+ ++I+L D R  E    RE T   + G++ FV Y+
Sbjct: 179 TIFTTTKYKWDIIANRMRELAYLNAGIKITLKDMRPDEEGKLREETFHAEDGLKEFVRYV 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  +  I I++A+ +N+ Y EN+  + NNI   +GGTHL+G R AL
Sbjct: 239 DRHRTHLFDDVIYLKTEKQGIPIEVAVMYNNDYSENIHSYVNNINTIEGGTHLTGFRMAL 298

Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 TRTLKTYADADPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + LS +LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK V+    LPG
Sbjct: 359 SGAVQQAVGEALSNYLEEHPKEAKLICDKVVLAATARIAARKARESVQRKNVMSGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS RDPKK E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ ++ K+  ++
Sbjct: 419 KLADCSNRDPKKCEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHKVFEAE 478

Query: 473 EIGTLITALGT-----GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G      G G    +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 SVMNIIQSIGVRFGVEGEGDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPR 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LYI  PPLY  T    ++     E      +++      +              
Sbjct: 539 VIQEGHLYIATPPLYLCTYKNKVKEYCYTEQQRQAFLDKYGDGVEDGKSIHTQRYKGLGE 598

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
            N                   +     +A          D E       + A   N  A
Sbjct: 599 MNPEQLWETTMDPNTRLLKQVNIENAAKADEIFSMLMGDDVEPRREFIEQNATYANIDA 657



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 58/71 (81%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I  QRYKGLGEMN  QLWETT++P+TR L +V I +A++AD++FS LMGD+VEPRREF
Sbjct: 586 KSIHTQRYKGLGEMNPEQLWETTMDPNTRLLKQVNIENAAKADEIFSMLMGDDVEPRREF 645

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 646 IEQNATYANID 656


>gi|303234457|ref|ZP_07321095.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4]
 gi|302494412|gb|EFL54180.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4]
          Length = 638

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 280/587 (47%), Positives = 385/587 (65%), Gaps = 6/587 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +N  Y AD I +L+GL+ V+ RP MYIG TD E GLHH++YEV+DN+IDE+L G  D+I
Sbjct: 2   KKNREYTADQITVLEGLEPVRVRPGMYIGSTD-EKGLHHLVYEVVDNSIDEALAGVCDLI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+  D S  V D+G GIP + H + G S  E ++T LHAGGKF+  +Y+ SGGLHGVG
Sbjct: 61  KVTIKKDNSIIVEDDGSGIPVETHPKTGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALS++L  R+KR+G +YE  F  G     L V       TGT + F+P   IF  
Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+ + L  R RE++FLN  V+I   D+R  +  +    Y+GGI++FV Y+++ KKPL 
Sbjct: 181 LNFDRNVLAKRFREMAFLNKGVKIEFADER--DGYKELFHYEGGIKSFVEYINKSKKPLD 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              + I+G +D   +++AM++ + Y+E ++ FTNNI   DGGTH+ G +SALTR +  Y 
Sbjct: 239 HEVMYIEGEKDTTKVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL +SE R+VV+S V + L
Sbjct: 299 RNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHL 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S + EE+P   + I++K L +   R AARRARDL R+K VLD  +LPGKLADC   D + 
Sbjct: 359 SFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEY 418

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+FLVEGDSAGGSAK GR  + QAILPLRGKILNVE+A  +++L+S+EI  +ITA GTG
Sbjct: 419 NEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTG 478

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDI+KLRY KI+IMTDADVDGAHIRTLLLTF +R M  L+  G +YI +PPLYGI
Sbjct: 479 IGKN-FDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGI 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
            +G  +      E   +  + +               G ++   L +
Sbjct: 538 IKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGEMNAEQLWD 584



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 14/181 (7%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---VQEQFVLEGSSIFSFGSKYKRI 692
           + L   LN    K+  +  G+    +  + ++  G   +     ++G+ I +    +   
Sbjct: 457 AHLERVLNSEEIKAMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYR 516

Query: 693 FSNRIEE-----NYLTILSLICNGDKI--KITGPCSLLDTIFSIGRK-GISMQRYKGLGE 744
           F   + E          L  I  G K+         L + +   G +  I +QRYKGLGE
Sbjct: 517 FMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGE 576

Query: 745 MNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801
           MNA QLW+TT+NP+ R L++V+I   D ++ D+ F  LMGD VEPRREFI++N++ +  +
Sbjct: 577 MNAEQLWDTTMNPEHRVLIKVEIDGEDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNI 636

Query: 802 D 802
           D
Sbjct: 637 D 637


>gi|227500982|ref|ZP_03931031.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
 gi|227216755|gb|EEI82153.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
          Length = 641

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 276/587 (47%), Positives = 400/587 (68%), Gaps = 5/587 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++Q+++YDA +I++L+GL+ V+ RP MYIG T  + GLHH++YEV+DN++DE+L G  D
Sbjct: 7   NSMQDNNYDAGNIRVLEGLEPVRLRPGMYIGSTS-QRGLHHLVYEVVDNSVDEALAGRCD 65

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT++ D   +V D+G GIP   H     S  E ++T LHAGGKF+  +YKVSGGLHG
Sbjct: 66  YIKVTIDKDNVVSVEDDGSGIPVKEHPTTHKSTLETVLTVLHAGGKFDDSAYKVSGGLHG 125

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS +L   +KR+G+IY+M F  G +   + V G    +TGT++TF    +IF
Sbjct: 126 VGVSVVNALSEYLIAEVKRDGHIYKMEFARGEVTKDIEVIGDT-VETGTKITFKADGEIF 184

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               ++   L++R RE++FLN  V+I   D+R  E  + +  ++GGI  FV+YL+R+K P
Sbjct: 185 DTTIYDRTILENRFREMAFLNKGVEIQFEDER--EDFKTSFKFEGGISEFVAYLNRNKDP 242

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +M+      G +++  ++ A ++ D Y EN+L + NNI   +GG+HL+GLRS+LTR +  
Sbjct: 243 IMEMIPNFDGFQEDTEVEFAFQYTDAYSENILSYANNIQTPEGGSHLAGLRSSLTRTVND 302

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K    K ++ ++ G+D REG T+++S+K+ DP+F  QTK KL +SEVR  V++F+++
Sbjct: 303 YARKYNFLKDNEDNLQGEDIREGITAIISVKITDPQFEGQTKSKLGNSEVRGAVDTFISE 362

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +LEE+P  AK I+ K L +   R+AAR+ARDLTR++ +LD A+LPGKLADC   D 
Sbjct: 363 HLANFLEENPKPAKAIIDKALASRRAREAARKARDLTRKRSILDSATLPGKLADCQSTDI 422

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++E+F+VEG+SAGGSAK GR    QAILPLRGKI+NVE+A  D++L+S+EI  +ITA G
Sbjct: 423 GENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKAHLDRVLNSEEIKNMITAFG 482

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGIG++ FD+ KLRY KIIIMTDADVDGAHIRTLLLTFF+R M  LI  G +Y+  PPLY
Sbjct: 483 TGIGKE-FDLEKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKDLIDKGHVYVALPPLY 541

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            I+ GK  +YV  ++  +  +    +           G ++   L  
Sbjct: 542 RISVGKKERYVYSDDERDKVIKELGVDNYKINRYKGLGEMNAEQLWE 588



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      V  + ++ N +        K +         ++      V    +    
Sbjct: 457 IMNVEKAHLDRVLNSEEIKNMITAFGTGIGKEFDLEKLRYGKIIIMTDADVDGAHIRTLL 516

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I    +      +  +     +  +         I  +G     + RYK
Sbjct: 517 LTFFYRYMKDLIDKGHVYVALPPLYRISVGKKERYVYSDDERDKVIKELGVDNYKINRYK 576

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDEVEPRREFIQENSLP 798
           GLGEMNA QLWETT++PD R LLRV + D      DD F+ LMG++VEPRR FIQEN+  
Sbjct: 577 GLGEMNAEQLWETTMDPDRRVLLRV-VEDMESTTTDDTFALLMGEKVEPRRNFIQENAKY 635

Query: 799 S-ALDI 803
              +D+
Sbjct: 636 VTDIDV 641


>gi|282878003|ref|ZP_06286811.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310]
 gi|281299838|gb|EFA92199.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310]
          Length = 657

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 278/650 (42%), Positives = 395/650 (60%), Gaps = 16/650 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N    ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAENQNTENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV DNGRGIP D H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCTDIEVTINDDESITVQDNGRGIPVDQHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALSS +  ++ R+G IY+  +  G    P+ V G   N  GT   F P  
Sbjct: 120 LHGVGVSCVNALSSHMTSQVFRDGKIYQQEYERGKALYPVKVIGET-NLRGTRQQFWPDG 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236
            IF+   F +D +  R+REL+FLN+ ++I+L         + R      K G++ FV Y+
Sbjct: 179 SIFTTTHFQWDIIARRMRELAFLNAGIRITLTDLRPNEEGKTRTEVFHAKDGLKEFVRYV 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  +  I I++A+ +N  Y EN+  + NNI   +GGTHL+G R+AL
Sbjct: 239 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAAL 298

Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 TRTLKTYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + L+ +LEEHP EAK I +KV+ A+  R AAR+AR+  +RK V+    LPG
Sbjct: 359 SGAVQQAVGEALTNYLEEHPTEAKQICEKVVLAATARIAARKARESVQRKNVMSGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ ++ ++  ++
Sbjct: 419 KLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478

Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 SVMNIIQSIGVRFGVDGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538

Query: 528 LIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           +I  G LYI  PPLY    + K+ +Y   E+  + ++   +  EE      ++      +
Sbjct: 539 IIEEGHLYIATPPLYKCTYKNKASEYCYTEQQRQAFIDKYAQGEEDSKSIHTQRYKGLGE 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           +         +D   +       +   +   I  +   +  +     +  
Sbjct: 599 MNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEQ 648



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 56/75 (74%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
               K I  QRYKGLGEMN  QLWETT++P TR L +V I +A+ AD++FS LMGD+VEP
Sbjct: 582 EEDSKSIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEP 641

Query: 788 RREFIQENSLPSALD 802
           RREFI++N+  + +D
Sbjct: 642 RREFIEQNATYANID 656


>gi|258510025|ref|YP_003183459.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476751|gb|ACV57070.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 637

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 291/637 (45%), Positives = 406/637 (63%), Gaps = 11/637 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D I    YD   I++L+GL AV+KRP MYIG T    GLHH+++E++DNA+DE+L G 
Sbjct: 1   MADRIPEQVYDESQIEVLEGLQAVRKRPGMYIGSTSA-KGLHHLVWEIVDNAVDEALAGR 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV DNG G P  +H + G  A E ++T LHAGGKF  K YKVSGGL
Sbjct: 60  CTRIVVQVHPDNSVTVIDNGAGFPVGIHPKTGRPAVETVLTTLHAGGKFGGKGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS W+++ + R+G IY   +  G     L V G   + TGT+V+F P  +
Sbjct: 120 HGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTGTKVSFKPDPE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y GG+  FV +L++ 
Sbjct: 179 IFTETTVFSAETLMNRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGVAEFVRWLNQS 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L   PI +   +D++++++A+++NDGY   V  F NNI   +GGTH +G +SALTR 
Sbjct: 238 KDVLFDDPIYVSAVKDDVAVEIALQYNDGYAATVYSFANNINTAEGGTHEAGFKSALTRV 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +SEVR +VE+ 
Sbjct: 298 INDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGNSEVRGIVETL 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + +  +LEE+P  A+ IV+K + A+  R+AARRAR+LTR K  +D+ SLPGKL DCS 
Sbjct: 358 FAERMQMFLEENPSIARKIVEKCILAARAREAARRARELTRSK-KMDVTSLPGKLTDCSS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L+++EI  +IT
Sbjct: 417 KDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVLANEEIRAIIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FDI+K RYHKI+IMTDAD DG+HIR LLLT F+R M  LI  G++YI +P
Sbjct: 477 ACGTGIG-DDFDISKARYHKIVIMTDADHDGSHIRILLLTLFYRFMRPLIDAGYIYIAQP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I +GK ++Y   +  LE  L                G ++ + L         +D 
Sbjct: 536 PLYKIEKGKVVRYAYSDAQLEQILQEMGREGVRLQRYKGLGEMNADQLWET-----TMDP 590

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +       +  ++  +I  +   +  +     +A 
Sbjct: 591 ESRTLLRVTMEDAMDADMIFSILMGDKVEPRRDFIAE 627



 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/103 (49%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
             L  I  G  ++     + L+ I    GR+G+ +QRYKGLGEMNA QLWETT++P++R+
Sbjct: 535 PPLYKIEKGKVVRYAYSDAQLEQILQEMGREGVRLQRYKGLGEMNADQLWETTMDPESRT 594

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LLRV + DA  AD +FS LMGD+VEPRR+FI E++     LD+
Sbjct: 595 LLRVTMEDAMDADMIFSILMGDKVEPRRDFIAEHARFVRNLDV 637


>gi|221632838|ref|YP_002522060.1| DNA gyrase subunit B [Thermomicrobium roseum DSM 5159]
 gi|221156882|gb|ACM06009.1| DNA gyrase, B subunit [Thermomicrobium roseum DSM 5159]
          Length = 636

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 293/590 (49%), Positives = 403/590 (68%), Gaps = 7/590 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+++   + YDA +IQ+L+GL+AV++RP MYIG TD   GLHH+IYE++DN++DE+L GY
Sbjct: 1   MTNST--TRYDASAIQVLEGLEAVRRRPGMYIGSTD-IRGLHHLIYEIVDNSVDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ DGS  V D+GRGIP D+H + G SA EVIMT LHAGGKF    YKVSGGL
Sbjct: 58  CDRIEVTIHRDGSVRVWDDGRGIPVDIHPKVGKSALEVIMTTLHAGGKFGGGGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ ++R+G IY   +  G+   P+   G    +D GTE  FLP  
Sbjct: 118 HGVGASVVNALSEWLEVTVRRDGKIYHQRYERGVPVTPVETIGETTPDDHGTETVFLPDR 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF   D+  D L  R RE+++L S + I  +D+R+          +GGI +FV +L+R 
Sbjct: 178 LIFRSLDYQSDVLLQRFREVAYLTSGLTIHFVDERTDLDMTFYF--EGGIVSFVRHLNRT 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L   P  ++  ++   +++A+++ DGY E+   F NNI   DGGTH++G ++ALTR 
Sbjct: 236 KEVLQPQPFYVKREQNGCLVEVAIQYTDGYAESTHAFANNINTIDGGTHVTGFKAALTRA 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  +    K++  ++ G+D REG T+++S+ +P+P+F  QTK KL ++EV  +V+S 
Sbjct: 296 INEYARRHGLLKENDPNLSGEDVREGLTAIISVMLPEPQFEGQTKTKLGNAEVAGIVQSI 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V +  +++LEEHP  A+ I++K L A+  R+AAR+AR+L +RKG LD  SLPGKLADC+E
Sbjct: 356 VYESFTSYLEEHPAIARRIIEKCLTAARAREAARKARELVQRKGALDTFSLPGKLADCTE 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP K+EL++VEGDSAGGSAKQGR R  QA+LPLRGKILNVE+AR D+ML ++EI  LIT
Sbjct: 416 RDPAKAELYIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDRMLHNEEIRALIT 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG D +D +KLRYH++I+MTDADVDGAHIRTLLLTFFFR +  LI +G LYI +P
Sbjct: 476 ALGTGIG-DQYDRSKLRYHRVILMTDADVDGAHIRTLLLTFFFRYLEGLIIDGHLYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +  GK + YV  +E  +  L                G ++   L  
Sbjct: 535 PLYRLQSGKEVHYVYSDEERDAILNRGDGKTWDIQRYKGLGEMNPEQLWE 584



 Score =  170 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 14/202 (6%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + + E  + +  +L + + ++ +    +  +           +
Sbjct: 447 LPLRGKILNVEKARLDRMLHNEEIRALITALGTGIGDQYDRSKLRYHR-----------V 495

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F F      I    +      +  L    +   +       
Sbjct: 496 ILMTDADVDGAHIRTLLLTFFFRYLEGLIIDGHLYIAQPPLYRLQSGKEVHYVYSDEER- 554

Query: 724 DTIFSIG-RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           D I + G  K   +QRYKGLGEMN  QLWETT++P  R+LL+V I DA +AD+ F+ LMG
Sbjct: 555 DAILNRGDGKTWDIQRYKGLGEMNPEQLWETTMDPARRTLLQVTIEDAVRADETFNMLMG 614

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
             V PR+ FIQ ++     LDI
Sbjct: 615 SAVPPRKRFIQAHAREVRNLDI 636


>gi|308234055|ref|ZP_07664792.1| DNA gyrase, B subunit [Atopobium vaginae DSM 15829]
          Length = 648

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 282/553 (50%), Positives = 380/553 (68%), Gaps = 14/553 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  +  SSY  + I++L+GLD V+KRP MYIG T   SGLHH+++E++DN++DE++ GY
Sbjct: 1   MTKEV--SSYGGNEIKVLEGLDPVRKRPGMYIGTTSA-SGLHHLVWEIVDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S +V DNGRGIP ++H ++ I   EV++T LHAGGKF+  +YKVSGGL
Sbjct: 58  CTSINVIVHPDNSISVEDNGRGIPVEMHPQKKIPTLEVVLTILHAGGKFDNAAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L  R+ R+G I+EM F  G +   +   G + + TGT +TF P   
Sbjct: 118 HGVGVSVVNALSKRLIARVSRDGGIFEMEFKRGKVTKKMTRVGDSSH-TGTTITFWPDDT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +N+DTL  RL+E +FLN ++ ISL D+R   PR+    Y GGI  FV YL+  K
Sbjct: 177 IFETTTYNFDTLHDRLQETAFLNKNLHISLTDEREETPRKEEFCYSGGIVDFVKYLNEEK 236

Query: 241 K--PLMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
              P +  PI I+GS            ++++++WN  Y E+V+ F N+I   +GG HL G
Sbjct: 237 TILPGLNDPIYIEGSSAPDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEG 296

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALT+ I  Y       K+ + ++ GDD REG  +++S+K+PDP+F  QTK KL SS 
Sbjct: 297 FRSALTKTINDYARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSY 356

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +R++    V  GL+ +LEEHP +AK I KK   A+  R AA+RAR + RRKG+L+ ASLP
Sbjct: 357 MRTLTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLP 416

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS RD + +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNVER + D+ LSS
Sbjct: 417 GKLADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSS 476

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           + I +LITA+GTG+G++ F+I K RYHKI+IMTDADVDGAHIR LLLTFF+R M  L+  
Sbjct: 477 ESITSLITAIGTGVGKE-FNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDA 535

Query: 532 GFLYIIKPPLYGI 544
           G++Y+ +PPLY I
Sbjct: 536 GYIYVAQPPLYQI 548



 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 155/470 (32%), Gaps = 41/470 (8%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD----PKKS 425
                   + +       +  +    R+ T RK     +            +    P  +
Sbjct: 184 NFDTLHDRLQETAFLNKNLHISLTDEREETPRKEEFCYSGGIVDFVKYLNEEKTILPGLN 243

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           +   +EG SA         R    +        +     F   + + E G  +    + +
Sbjct: 244 DPIYIEGSSA--PDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEGFRSAL 301

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP 539
            +   D    R HK++   +A++ G  IR  L      ++P     G          ++ 
Sbjct: 302 TKTINDY--ARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSYMRT 359

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--------IELFCDSKGVISKNDLRNFI 591
               I      +Y+++  +    +  ++                   KG++    L   +
Sbjct: 360 LTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLPGKL 419

Query: 592 DDALKIDKLIKDF----------YPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKL 638
            D    D  + +                +    QAV+     + N E  Q+     +  +
Sbjct: 420 ADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSSESI 479

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
            + +  I     K ++        +V      V    +      F +      + +  I 
Sbjct: 480 TSLITAIGTGVGKEFNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDAGYIY 539

Query: 699 ENYLTILSLICNGDKIKI---TGPCSLLDT-IFSIGRKGISMQRYKGLGEMNASQLWETT 754
                +  +   G K      T     L+   F    K  S+QRYKGLGEM+  QLW TT
Sbjct: 540 VAQPPLYQIKAKGKKYGKYLYTDEELALEAKQFEDSSK-YSVQRYKGLGEMDPEQLWSTT 598

Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           + P  R +LRV + DA +A+   + LMG +VE R++FIQ ++     LDI
Sbjct: 599 MEPKNRIMLRVTVDDAREAERAVANLMGTQVEKRKDFIQTHAKDVRFLDI 648


>gi|149278877|ref|ZP_01885012.1| DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase)
           [Pedobacter sp. BAL39]
 gi|149230496|gb|EDM35880.1| DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase)
           [Pedobacter sp. BAL39]
          Length = 652

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 290/603 (48%), Positives = 402/603 (66%), Gaps = 16/603 (2%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+ N   S+Y AD+IQ+L+GL+AV+KRPSMYIGDT G  GLHH++YEV+DN+IDE+L G
Sbjct: 1   MSEENDPKSNYSADNIQVLEGLEAVRKRPSMYIGDT-GIKGLHHLVYEVVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD I V +  D S  V DNGRGIPT ++K+E  SA E++MT LHAGGKF++ +YKVSGG
Sbjct: 60  HADTIYVNILEDNSIRVEDNGRGIPTGINKKENKSALEIVMTVLHAGGKFDKDTYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ LK  + REG I+   +  G     + + G   +  GT VTF P  
Sbjct: 120 LHGVGVSCVNALSTHLKAEVHREGQIWMQEYNIGKPLYDVKLVGET-DKRGTIVTFSPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
            IF+    + YDTL  RLRELSFLN  ++++L D+R  +            +GG++ FV 
Sbjct: 179 TIFTQTTEYRYDTLAARLRELSFLNKGIKLTLTDERETDADGNFITELFHSEGGLKEFVQ 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD  +  L+  PI ++G ++ I ++LA+++ND Y ENV  + NNI   +GGTH++G R 
Sbjct: 239 FLDGGRPSLIAEPIYVEGIKNGIPVELALQYNDSYAENVHSYVNNINTHEGGTHIAGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR + +Y +KS   K  K  + GDD REG T+V+S+K+ +P+F  QTK KL +SEV  
Sbjct: 299 GLTRTLKAYADKSGLLKNVKFEITGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNSEVMG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V + L+ +LEE+P EAK+IV KV+ A+  R AAR+AR++ +RK V+  + LPGKL
Sbjct: 359 AVDVAVGEALNNYLEENPREAKLIVNKVILAATARAAARKAREMVQRKSVMGGSGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS+ DP+K E++LVEGDSAGG+AKQGR R  QAILPL+GKILNVE+A   K+  + EI
Sbjct: 419 ADCSDSDPEKCEIYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAMEHKIYENDEI 478

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TALG  IG    D      KLRYHK++IMTDAD+DG+HI TL+LTFFFR M +LI 
Sbjct: 479 KNMFTALGVSIGTPEDDKALNLTKLRYHKVVIMTDADIDGSHITTLILTFFFRYMKALIE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKND 586
            G++YI  PPLY + +GK  +Y  +++  +  +     + + E          G ++   
Sbjct: 539 AGYVYIAAPPLYQVKKGKEHEYCWNDQQRDAAVQRLKGAGKEESVHIQRYKGLGEMNAEQ 598

Query: 587 LRN 589
           L +
Sbjct: 599 LWD 601



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 9/191 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           + N E   E  +    ++ N    +       + +K+ + +      +V      +    
Sbjct: 461 ILNVEKAMEHKIYENDEIKNMFTALGVSIGTPEDDKALNLTKLRYHKVVIMTDADIDGSH 520

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRK 732
           +      F F      I +  +      +  +    +             +  +   G++
Sbjct: 521 ITTLILTFFFRYMKALIEAGYVYIAAPPLYQVKKGKEHEYCWNDQQRDAAVQRLKGAGKE 580

Query: 733 -GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
             + +QRYKGLGEMNA QLW+TTLNP TR+LL+  I +A++ D  FS LMGDEV PRR+F
Sbjct: 581 ESVHIQRYKGLGEMNAEQLWDTTLNPQTRTLLQATIENAAECDHTFSMLMGDEVGPRRDF 640

Query: 792 IQENSLPSALD 802
           I+ N+  + +D
Sbjct: 641 IERNAKYAKID 651


>gi|169823702|ref|YP_001691313.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328]
 gi|167830507|dbj|BAG07423.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328]
          Length = 638

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 280/587 (47%), Positives = 385/587 (65%), Gaps = 6/587 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +N  Y AD I +L+GL+ V+ RP MYIG TD E GLHH++YEV+DN+IDE+L G  D+I
Sbjct: 2   KKNREYTADQITVLEGLEPVRVRPGMYIGSTD-EKGLHHLVYEVVDNSIDEALAGVCDLI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+  D S  V D+G GIP + H + G S  E ++T LHAGGKF+  +Y+ SGGLHGVG
Sbjct: 61  KVTIKKDNSIIVEDDGSGIPVETHPKTGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALS++L  R+KR+G +YE  F  G     L V       TGT + F+P   IF  
Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+ + L  R RE++FLN  V+I   D+R  +  +    Y+GGI++FV Y+++ KKPL 
Sbjct: 181 LNFDKNVLAKRFREMAFLNKGVKIEFSDER--DGYKELFHYEGGIKSFVEYINKSKKPLD 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              + I+G +D   +++AM++ + Y+E ++ FTNNI   DGGTH+ G +SALTR +  Y 
Sbjct: 239 HEVMYIEGEKDTTKVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL +SE R+VV+S V + L
Sbjct: 299 RNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHL 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S + EE+P   + I++K L +   R AARRARDL R+K VLD  +LPGKLADC   D + 
Sbjct: 359 SFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEY 418

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+FLVEGDSAGGSAK GR  + QAILPLRGKILNVE+A  +++L+S+EI  +ITA GTG
Sbjct: 419 NEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTG 478

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDI+KLRY KI+IMTDADVDGAHIRTLLLTF +R M  L+  G +YI +PPLYGI
Sbjct: 479 IGKN-FDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGI 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
            +G  +      E   +  + +               G ++   L +
Sbjct: 538 IKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGEMNAEQLWD 584



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 14/181 (7%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---VQEQFVLEGSSIFSFGSKYKRI 692
           + L   LN    K+  +  G+    +  + ++  G   +     ++G+ I +    +   
Sbjct: 457 AHLERVLNSEEIKAMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYR 516

Query: 693 FSNRIEE-----NYLTILSLICNGDKI--KITGPCSLLDTIFSIGRK-GISMQRYKGLGE 744
           F   + E          L  I  G K+         L + +   G +  I +QRYKGLGE
Sbjct: 517 FMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGE 576

Query: 745 MNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801
           MNA QLW+TT+NP+ R L++V+I   D ++ D+ F  LMGD VEPRREFI++N++ +  +
Sbjct: 577 MNAEQLWDTTMNPEHRILIKVEIDGEDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNI 636

Query: 802 D 802
           D
Sbjct: 637 D 637


>gi|78183717|ref|YP_376151.1| DNA gyrase subunit B [Synechococcus sp. CC9902]
 gi|78168011|gb|ABB25108.1| DNA gyrase subunit B [Synechococcus sp. CC9902]
          Length = 655

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 293/661 (44%), Positives = 409/661 (61%), Gaps = 20/661 (3%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD  +  + Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNA+DE+L G
Sbjct: 1   MSDASKVQNEYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNAVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D ITV L  DGS +V+DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDRITVILGADGSASVTDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL--VVTGSAGN-DTGTEVTFL 176
           LHGVGVSVVNALS W+++ ++R+G ++   F  G     L       A   +TGT V FL
Sbjct: 120 LHGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGTLLSESQPEAEQGETGTTVCFL 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229
           P + IF+    F+Y TL  RLREL++LN  VQI   D+R        +P E   FY+GGI
Sbjct: 180 PDTQIFTGGIVFDYATLSARLRELAYLNGGVQIVFRDERESSLSDAGDPHEEIYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y+++ K  L    I +   +D + ++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVAYMNKAKDALHPDIIYVNSEKDGVQVEAALQWCADAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++ +K    K+   ++ G++ REG T+VLS+K+P+P F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V++ V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDNLVGESLSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI  LITALG GI  + FD   LRYH+++IMTDADVDGAHIRTL+LTFF+R    L
Sbjct: 480 YKNTEIQALITALGLGIKGEEFDQKSLRYHRVVIMTDADVDGAHIRTLILTFFYRYKREL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+  Y  +E  L+  L     + +         G +    L
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNESDLQKTLKGFGENAKYTIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                    +D   +       +  +E   I  +   +             +  L+  A 
Sbjct: 600 WET-----TMDPSTRMMKRIEIEDALEADRIFTILMGDKV-APRREFIETHSKELDMAAL 653

Query: 648 K 648
            
Sbjct: 654 D 654



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +            +  I  +   +  +    +    L   L  +  K E+    S+    
Sbjct: 452 QGRDRRFQAILPLRGKILNIEKTDDSKIYKNTEIQALITALG-LGIKGEEFDQKSLRYHR 510

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
           +++      V    +      F +  K + +    I      +  +    +         
Sbjct: 511 VVI-MTDADVDGAHIRTLILTFFYRYKRELVEGGYIYIACPPLYKVERGKNHTYCYNESD 569

Query: 722 LLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           L  T+   G     ++QR+KGLGEM   QLWETT++P TR + R++I DA +AD +F+ L
Sbjct: 570 LQKTLKGFGENAKYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRIEIEDALEADRIFTIL 629

Query: 781 MGDEVEPRREFIQENSLP---SALDI 803
           MGD+V PRREFI+ +S     +ALDI
Sbjct: 630 MGDKVAPRREFIETHSKELDMAALDI 655


>gi|282859419|ref|ZP_06268525.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010]
 gi|282587817|gb|EFB93016.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010]
          Length = 656

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 278/607 (45%), Positives = 386/607 (63%), Gaps = 20/607 (3%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++     ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAEIQEHENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV DNGRGIP D H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCTDIEVTINEDNSITVEDNGRGIPVDEHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS  +  ++ REG IY+  +  G    P+ V G     TGT   F P  
Sbjct: 120 LHGVGVSCVNALSKHMMSQVFREGKIYQQEYEKGKPLYPVKVVGETE-KTGTRQQFWPDG 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235
            IF+   F +D +  R+REL++LN+ ++I+LID R    + + R      K G++ +V Y
Sbjct: 179 TIFTTTVFQWDVVARRMRELAYLNAGIKITLIDLRPDPETGKTRTEIFHAKDGLKEYVRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +DRH++ L    I ++  +  + I++A+ +N  Y EN+  + NNI   +GGTHL G R+A
Sbjct: 239 VDRHRQHLFNDVIYLKSEKQGVPIEVAIMYNTDYTENIHSYVNNINTIEGGTHLQGFRTA 298

Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LTR + +Y +     S   +K K  + G+D REG T+V+S+K+ +P+F  QTK KL +SE
Sbjct: 299 LTRTLKTYADNDAQISKQIEKAKIEITGEDFREGLTAVISVKVAEPQFEGQTKTKLGNSE 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+  V + LSA+LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK V+    LP
Sbjct: 359 VSGAVQQAVGEALSAYLEEHPSEAKMICNKVVLAATARIAARKARESVQRKNVMTGGGLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ +  ++  +
Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478

Query: 472 QEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + +  +I ++G   G +       +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP
Sbjct: 479 ESVMNIIQSIGVRFGVEEDSDFEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE----IELFCDSKGVI 582
            +I  G L+I  PPLY  T  K  +Y   E+  + ++      EE            G +
Sbjct: 539 KVIEQGHLFIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYGAGEEGKTIHTQRYKGLGEM 598

Query: 583 SKNDLRN 589
           +   L  
Sbjct: 599 NPEQLWE 605



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
             G K I  QRYKGLGEMN  QLWETT++P TR L +V I +A+ AD++FS LMGD+VEP
Sbjct: 582 EEG-KTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEVFSMLMGDDVEP 640

Query: 788 RREFIQENSLPSALD 802
           RREFI++N+  + +D
Sbjct: 641 RREFIEQNATYANID 655


>gi|257054095|ref|YP_003131927.1| DNA gyrase subunit B [Saccharomonospora viridis DSM 43017]
 gi|256583967|gb|ACU95100.1| DNA gyrase subunit B [Saccharomonospora viridis DSM 43017]
          Length = 654

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 277/597 (46%), Positives = 380/597 (63%), Gaps = 19/597 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +NS Y A SI +L+GL+AV+KRP MYIG T G  GLHH+I EV+DN++DE++ GY
Sbjct: 1   MA--AKNSEYSASSITVLEGLEAVRKRPGMYIGST-GVRGLHHLIQEVVDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + VTL  DG   V D+GRGIP + H   G    E+++T+LHAGGKF+  SY VSGGL
Sbjct: 58  ASRVEVTLLADGGVRVVDDGRGIPVEPHPVHGKPTVEIVLTQLHAGGKFDSDSYAVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L++ I R+G I+   + N +    LV  G   + +GT VTF    +
Sbjct: 118 HGVGVSVVNALSSALEVEIHRDGRIWAQRYENSVP-GELVDKGPT-DRSGTSVTFWADPE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------MFYKGG 228
           IF   ++N +T+  RL+E++FLN  + + L D+R  +                  +Y GG
Sbjct: 176 IFETTEYNAETVARRLQEMAFLNKGLTMILRDERVTDEEGEDATGERAQLKERTYYYPGG 235

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +E FV Y++  ++ +  S I  +   D + +++AM+WNDGY  +V  F N I   +GGTH
Sbjct: 236 LEDFVKYINASREAIHPSVISFEQKGDGLEVEVAMQWNDGYTPSVYTFANTINTHEGGTH 295

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G R+ALTR + +Y       K+   ++ GDD REG  +++SIK+ +P+F  QTK KL 
Sbjct: 296 EEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAIVSIKLTEPQFEGQTKTKLG 355

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SE RS V++  N+ L+ W E +P EAK+I+ K + ++  R AAR+ARDL RRKG +DI 
Sbjct: 356 NSEARSFVQTACNEWLADWFERNPTEAKLIINKAVSSAQARLAARKARDLVRRKGAMDIG 415

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC   DP++ EL++VEGDSAGGSAK+GR    QAILP+RGKI+NVE+AR DK+
Sbjct: 416 GLPGKLKDCRSNDPEECELYIVEGDSAGGSAKEGRDSRFQAILPIRGKIINVEKARIDKV 475

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           L +QE+ +LITALGTGI  D FDI+KLRYHKI+IM DADVDG HIRTLLLT  FR M  L
Sbjct: 476 LKNQEVQSLITALGTGI-HDDFDISKLRYHKIVIMADADVDGQHIRTLLLTLLFRFMRPL 534

Query: 529 IHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           +  G +Y+ +PPLY I   +   QY   +   +  L   + +       D       
Sbjct: 535 VEQGHVYLAQPPLYKIKWPRMEPQYAYSDRERDGLLRAGAEAGRKLPKDDGIQRYKG 591



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA +LWETT++P  R LL+V + DA+QAD+LFS LMG++VE RR FI  N
Sbjct: 586 IQRYKGLGEMNAEELWETTMDPSNRVLLQVTLDDAAQADELFSVLMGEDVEARRSFITRN 645

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 646 AKGVQFLDV 654


>gi|255535639|ref|YP_003096010.1| DNA gyrase subunit B [Flavobacteriaceae bacterium 3519-10]
 gi|255341835|gb|ACU07948.1| DNA gyrase subunit B [Flavobacteriaceae bacterium 3519-10]
          Length = 644

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 278/595 (46%), Positives = 397/595 (66%), Gaps = 12/595 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A SIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L G+ D I
Sbjct: 1   MSQKEYTASSIQALEGMEHVRLRPSMYIGDV-GTRGLHHLVYEVVDNSIDEALAGHCDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           +V ++   S +V DNGRGIP D+H++E  SA EV+MT++ AGGKF++ SYKVSGGLHGVG
Sbjct: 60  SVVIHEGESISVKDNGRGIPVDMHEKEQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALS+ L   + R+G +Y+  +  G   + +   G+ G + GTEV F P + IF  
Sbjct: 120 VSCVNALSTSLVATVNRDGKVYQQKYSEGKALDKVHEIGTTG-ERGTEVFFQPDATIFQE 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHK 240
             +NYDTL  RLRELSFLN  + I+L D+R                GG+  FV ++D ++
Sbjct: 179 TVYNYDTLAARLRELSFLNKGITITLTDERRPNEDGTFVSEVFHSDGGLREFVEFIDGNR 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +M + I ++G  ++I +++AMR+N  Y+EN+  + NNI   +GGTHL+G R ALTR +
Sbjct: 239 ESIMSNVIYMEGDNNDIPVEVAMRYNTSYNENLHSYVNNINTHEGGTHLAGFRRALTRTL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + ++     K+K  V GDD REG T+V+S+K+ +P+F  QTK KL +SEV   V+  V
Sbjct: 299 KKFADELGIPAKEKVEVTGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAVDKIV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +LEE+P EAKIIV+KV+ A+  R AA++AR+L +RK  +  + LPGKL+DCS +
Sbjct: 359 GEMLTNFLEENPNEAKIIVQKVVLAAKARQAAKKARELVQRKSPMGGSGLPGKLSDCSSK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++   K+  ++EI  + TA
Sbjct: 419 DPAISELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIKNIYTA 478

Query: 481 LGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LG  +G +      +I+KLRYHK++IMTDAD+DG+HI TL+LTFFFR M  LI NG+++I
Sbjct: 479 LGVSVGTEEDSKALNISKLRYHKVVIMTDADIDGSHISTLILTFFFRYMKELIENGYIFI 538

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
            +PPLY + +G+   Y  +E+  E++ +  +   +          G ++   L  
Sbjct: 539 AQPPLYLLKKGQKKIYAYNEKEREEFTLELAPDGKGVEVQRYKGLGEMNPEQLWE 593



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 8/208 (3%)

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                          +E++++  V++ E  + I  +L   +        E+  K+ + S 
Sbjct: 443 RHFQAILPLRGKILNVEKSMLHKVYDNEEIKNIYTALGVSVG------TEEDSKALNISK 496

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
                +V      +    +      F F    + I +  I      +  L     KI   
Sbjct: 497 LRYHKVVIMTDADIDGSHISTLILTFFFRYMKELIENGYIFIAQPPLYLLKKGQKKIYAY 556

Query: 718 GPCSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                 +    +    KG+ +QRYKGLGEMN  QLWETTLNP+ R L +V I   + AD+
Sbjct: 557 NEKEREEFTLELAPDGKGVEVQRYKGLGEMNPEQLWETTLNPEHRILKQVTIESLADADN 616

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALDI 803
           +FS LMGDEV PRREFI++N++ + +D+
Sbjct: 617 VFSMLMGDEVPPRREFIEKNAVYAKIDV 644


>gi|282880626|ref|ZP_06289332.1| DNA gyrase, B subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281305521|gb|EFA97575.1| DNA gyrase, B subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 657

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 279/659 (42%), Positives = 381/659 (57%), Gaps = 15/659 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++     ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAEKQNTENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV DNGRGIP D H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCTDIEVTINEDESITVQDNGRGIPVDQHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALSS +  ++ R+G IY+  +  G    P+ V G   +  GT   F P  
Sbjct: 120 LHGVGVSCVNALSSHMTSQVFRDGKIYQQEYEKGKALYPVKVVGET-DKRGTRQQFWPDG 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236
            IF+   F +D +  R+REL+FLN+ ++I+L         + R      K G++ FV Y+
Sbjct: 179 SIFTTTHFQWDIIARRMRELAFLNAGIRITLTDLRPNEEGKTRTEVFHAKDGLKEFVRYV 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  +  I I++A+ +N  Y EN+  + NNI   +GGTHL+G R+AL
Sbjct: 239 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAAL 298

Query: 297 TRQITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +         +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 TRTLKTYADSEPTISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + LS +LEEHP EAK I +KV+ A+  R AAR+AR+  +RK  +    LPG
Sbjct: 359 SGAVQQAVGEALSNYLEEHPTEAKQICEKVVLAATARIAARKARESVQRKNFMSGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ ++ ++  ++
Sbjct: 419 KLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478

Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 SVMNIIQSIGVRFGVEGEADREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LYI  PPLY  +           E      I++  + E +              
Sbjct: 539 VIEEGHLYIATPPLYKCSYKNKASEYCYTEQQRQAFIDKYANGEEDSKSIHTQRYKGLGE 598

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
            N                          A          D E       K A   N  A
Sbjct: 599 MNPEQLWETTMNPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEKNATYANIDA 657



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 56/75 (74%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
               K I  QRYKGLGEMN  QLWETT+NP TR L +V I +A+ AD++FS LMGD+VEP
Sbjct: 582 EEDSKSIHTQRYKGLGEMNPEQLWETTMNPKTRLLKQVTIENAADADEIFSMLMGDDVEP 641

Query: 788 RREFIQENSLPSALD 802
           RREFI++N+  + +D
Sbjct: 642 RREFIEKNATYANID 656


>gi|218291098|ref|ZP_03495121.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218238983|gb|EED06190.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 637

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 291/637 (45%), Positives = 406/637 (63%), Gaps = 11/637 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D I    YD   I++L+GL AV+KRP MYIG T    GLHH+++E++DNA+DE+L G 
Sbjct: 1   MADRIPEQVYDESQIEVLEGLQAVRKRPGMYIGSTSA-KGLHHLVWEIVDNAVDEALAGR 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV DNG G P  +H + G  A E ++T LHAGGKF  K YKVSGGL
Sbjct: 60  CTRIVVQVHPDNSVTVIDNGAGFPVGIHPKTGRPAVETVLTTLHAGGKFGGKGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS W+++ + R+G IY   +  G     L V G   + TGT+V+F P  +
Sbjct: 120 HGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTGTKVSFKPDPE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y GG+  FV +L++ 
Sbjct: 179 IFTETTVFSAETLMNRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGVAEFVRWLNQS 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L   PI +   +D++++++A+++NDGY+  V  F NNI   +GGTH +G +SALTR 
Sbjct: 238 KDVLFDDPIYVSAVKDDVAVEIALQYNDGYNATVYSFANNINTAEGGTHEAGFKSALTRV 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +SEVR +VE+ 
Sbjct: 298 INDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGNSEVRGIVETL 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + +  +LEE+P  A+ IV K + A+  R+AARRAR+LTR K  +D+ SLPGKL DCS 
Sbjct: 358 FAERMQMFLEENPSIARKIVDKCILAARAREAARRARELTRSK-KMDVTSLPGKLTDCSS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L+++EI  +IT
Sbjct: 417 KDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVLANEEIRAIIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FDI+K RYHKI+IMTDAD DG+HIR LLLT F+R M  LI  G++YI +P
Sbjct: 477 ACGTGIG-DDFDISKARYHKIVIMTDADHDGSHIRILLLTLFYRFMRPLIDAGYIYIAQP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I +GK ++Y   +  LE  L                G ++ + L         +D 
Sbjct: 536 PLYKIEKGKVVRYAYSDAQLEQILQEMGREGVRLQRYKGLGEMNADQLWET-----TMDP 590

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +       +  ++  +I  +   +  +     +A 
Sbjct: 591 ESRTLLRVTMEDAMDADMIFSILMGDKVEPRRDFIAE 627



 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/103 (49%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
             L  I  G  ++     + L+ I    GR+G+ +QRYKGLGEMNA QLWETT++P++R+
Sbjct: 535 PPLYKIEKGKVVRYAYSDAQLEQILQEMGREGVRLQRYKGLGEMNADQLWETTMDPESRT 594

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LLRV + DA  AD +FS LMGD+VEPRR+FI E++     LD+
Sbjct: 595 LLRVTMEDAMDADMIFSILMGDKVEPRRDFIAEHARFVRNLDV 637


>gi|332685540|ref|YP_004455314.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
 gi|332369549|dbj|BAK20505.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
          Length = 643

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 290/643 (45%), Positives = 412/643 (64%), Gaps = 4/643 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
              +   Y+A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L G+A 
Sbjct: 2   QQQRAEEYNASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDEALAGFAT 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVSGGLHG
Sbjct: 61  EIRVTIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L+ R+ R G IY   +  G +   L V G   +  GT + F+P  +IF
Sbjct: 121 VGSSVVNALSTKLEARVYRNGKIYYQEYHRGNVVADLKVIGDT-DRHGTAIHFIPDPEIF 179

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                FN++ L  R+REL+FLN  ++IS+ D R PE      +Y+GGI+++V +L+ +K 
Sbjct: 180 KETIEFNFEKLATRVRELAFLNRGLKISIEDLRGPETVLRDYYYEGGIKSYVGHLNANKD 239

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G +  I+++++M++ DGYH N+L F NNI   +GGTH +G ++ALTR I 
Sbjct: 240 VLFDEPIYVEGEQQEITVEVSMQYTDGYHSNLLSFANNIHTYEGGTHEAGFKTALTRVIN 299

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y +K    K++  ++ G+D REG T V+SIK P+P+F  QTK KL +SEVR+V +   +
Sbjct: 300 DYAKKQKLMKENDENLTGEDVREGLTCVISIKHPEPQFEGQTKTKLGNSEVRTVTDRLFS 359

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P   K IV K L AS  R AA+RAR++TRRKG L+I++LPGKLADCS R+
Sbjct: 360 EHFGKFLMENPTIGKKIVDKGLLASKARLAAKRAREVTRRKGNLEISNLPGKLADCSSRE 419

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            +K ELF+VEGDSAGGSAKQGR R  QAILP+RGKILNVE+A  DK+L+++EI +L TA+
Sbjct: 420 AEKCELFIVEGDSAGGSAKQGRDRMFQAILPIRGKILNVEKASMDKILANEEIRSLFTAM 479

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G+D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M  ++  G++YI +PPL
Sbjct: 480 GTGFGED-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPL 538

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           YG+ +GK++ YV+  +  E+ L +   +         +      ++ +       +D   
Sbjct: 539 YGVKQGKNITYVQPGKQAEEELSHLMETLPKSPKASVQRYKGLGEMDDHQLWETTMDPER 598

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +          +    I  +   +  +     +        N 
Sbjct: 599 RLMSRVSVDDAVAADQIFEMLMGDKVEPRRAFIEENAHYVKNL 641



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           K        L++T+    +   S+QRYKGLGEM+  QLWETT++P+ R + RV + DA  
Sbjct: 554 KQAEEELSHLMETLPKSPK--ASVQRYKGLGEMDDHQLWETTMDPERRLMSRVSVDDAVA 611

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           AD +F  LMGD+VEPRR FI+EN+     LDI
Sbjct: 612 ADQIFEMLMGDKVEPRRAFIEENAHYVKNLDI 643


>gi|303233456|ref|ZP_07320124.1| DNA gyrase, B subunit [Atopobium vaginae PB189-T1-4]
 gi|302480464|gb|EFL43556.1| DNA gyrase, B subunit [Atopobium vaginae PB189-T1-4]
          Length = 648

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 281/601 (46%), Positives = 385/601 (64%), Gaps = 17/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    ++SY  + I++L+GLD V+KRP MYIG T    GLHH+++E++DN++DE++ G+
Sbjct: 1   MT--TPSNSYTGNEIKVLEGLDPVRKRPGMYIGTTSAA-GLHHLVWEIVDNSVDEAMAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V DNGRGIP ++H ++ I   EV++T LHAGGKF+  +YKVSGGL
Sbjct: 58  CTSIEVTVHPDNSISVKDNGRGIPVEIHPQKKIPTLEVVLTILHAGGKFDNAAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L   ++R+G I++M F  G +   +   G   + TGT +TF P   
Sbjct: 118 HGVGVSVVNALSKRLIATVERDGGIFQMEFERGKVTKKMQQIG-TSSKTGTTITFWPDDL 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +N++TLQ+RL+E +FLN ++ I + D+R   PR     Y GGI  FV +L+  K
Sbjct: 177 IFETTVYNFETLQNRLQETAFLNKNLHIRITDEREETPRVEEYCYSGGIIDFVKFLNEEK 236

Query: 241 KPLM--QSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            PL    +PI I+G             +++A++WN  Y E V+ F N+I   +GG HL G
Sbjct: 237 TPLPGLTTPIYIEGQSDESAPLTQKGEVEVAIQWNTSYSEYVMSFANDIYTDEGGMHLEG 296

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT+ +  Y       K+   ++ GDD REG  +V+S+K+PDP+F  QTK KL SS 
Sbjct: 297 FRTALTKTVNDYARGHNLLKEKDSNLTGDDIREGLCAVISVKLPDPQFEGQTKAKLGSSY 356

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +RS+    V  GL+ + EEHP +AK I KK   A+  R AA++AR + RRKG+L+ ASLP
Sbjct: 357 MRSLTNKIVAAGLTEYFEEHPNQAKEIFKKAAQAAKGRLAAQKARQVARRKGLLESASLP 416

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS RD + +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNVER + D+ LSS
Sbjct: 417 GKLADCSVRDAEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSS 476

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           + I +LITA+GTG+G + F+I K RYHKI+IMTDADVDGAHIR LLLTFF+R M  L+  
Sbjct: 477 ETITSLITAIGTGVGNE-FNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDA 535

Query: 532 GFLYIIKPPLYGITRGKSLQY---VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           GF+Y+ +PPLY I             DEE   +       S+         G +    L 
Sbjct: 536 GFIYVAQPPLYQIKAKGKKYGKYLYTDEELAIEAREYDDPSKYTVQRYKGLGEMDPEQLW 595

Query: 589 N 589
           +
Sbjct: 596 S 596



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
            ++QRYKGLGEM+  QLW TT+ P  R +LRV I DA  A+   + LMG +VE R++FIQ
Sbjct: 578 YTVQRYKGLGEMDPEQLWSTTMEPKNRIMLRVTIEDARDAERAVANLMGSQVEKRKDFIQ 637

Query: 794 ENSLPSA-LDI 803
            ++     LDI
Sbjct: 638 THAKDVRFLDI 648


>gi|118587497|ref|ZP_01544922.1| DNA gyrase, B subunit [Oenococcus oeni ATCC BAA-1163]
 gi|71466856|emb|CAH41002.1| DNA gyrase subunit B [Oenococcus oeni]
 gi|118432147|gb|EAV38888.1| DNA gyrase, B subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 652

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 286/639 (44%), Positives = 401/639 (62%), Gaps = 9/639 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+SY   SIQIL+GL+AV+KRP MYIG T   SGLHH+++E++DN IDE+L G+A  +T+
Sbjct: 15  NNSYGGSSIQILEGLEAVRKRPGMYIGST-ASSGLHHLVWEIIDNGIDEALAGFAHHVTL 73

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  D S T++D+GRG+P ++  + G  A E + T LHAGGKF+ KSYKVSGGLHGVG S
Sbjct: 74  TIEKDNSITITDDGRGVPVEIQPKTGRPAMEAVFTILHAGGKFDSKSYKVSGGLHGVGAS 133

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +R+ R+  IY M F  G +   + +         GT V F P  DIF   
Sbjct: 134 VVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDIFRET 193

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y TL  R+REL+FLN  +++S+ DKR    +  +  Y+GGI  +V +L+++K+PL 
Sbjct: 194 IVFDYRTLASRIRELAFLNKGLRLSITDKRVDPVKNESFMYEGGIAEYVKFLNKNKQPLF 253

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             P+ ++G  + I +++A+++ D   E ++ FTNNI   +GGTH +G + ALTR I  YV
Sbjct: 254 PEPVYVEGEENGIQVEVALQYTDAVAETLMSFTNNIHTHEGGTHETGFKMALTRIINDYV 313

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +K    K     + G+D REG T+++SIK PDP+F  QTK KL +++ +  V    +   
Sbjct: 314 KKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDAQQAVNHQFSTIF 373

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + ++ E+P  A+ I  K L AS  R AA++ARDLTR+K  L+I++L GKLAD + RDP+ 
Sbjct: 374 NRFMMENPETARAIANKGLIASKARVAAKKARDLTRKKSGLEISALAGKLADNTSRDPEI 433

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG
Sbjct: 434 SELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANEEIRSLFTAMGTG 493

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG- 543
            G++ FDI+K  YHK+IIMTDADVDGAHIRTLLLT FFR M  LI  G++YI +PPLYG 
Sbjct: 494 FGEE-FDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYIYIAQPPLYGV 552

Query: 544 -ITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I       Y+  +E L+ Y      S +         G +    L +   D     + +
Sbjct: 553 AIGNSDQRVYLDSDEELDQYTATLPASPKPRIQRYKGLGEMDAVQLWDTTMDPKH--RRL 610

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
               P +         +      E  +E     A  + +
Sbjct: 611 LRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVED 649



 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 102/305 (33%), Gaps = 16/305 (5%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           TDA     H  + +   F  + P           I         + + L   K    +  
Sbjct: 359 TDAQQAVNHQFSTIFNRFMMENPETARAIANKGLIASKARVAAKKARDLTRKKSGLEISA 418

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                + +   +       ++  +                           +E+A +  V
Sbjct: 419 LAGKLADNTSRDPEISELFIVEGDSAGGSAKQGRS-RLTQAILPIRGKILNVEKATLDKV 477

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
              E  + +  ++ +      +       K          I++            L  + 
Sbjct: 478 LANEEIRSLFTAMGTGFGEEFDISKAHYHKV---------IIMTDADVDGAHIRTLLLTL 528

Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL--LDTIFSIGRKGISMQRY 739
            F +           I +  L  +++  +  ++ +     L           K   +QRY
Sbjct: 529 FFRYMRPLIDAGYIYIAQPPLYGVAIGNSDQRVYLDSDEELDQYTATLPASPK-PRIQRY 587

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEM+A QLW+TT++P  R LLRV      + D  F  LMGD VEPRREFI++N+   
Sbjct: 588 KGLGEMDAVQLWDTTMDPKHRRLLRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFV 647

Query: 800 A-LDI 803
             LD+
Sbjct: 648 EDLDV 652


>gi|222100717|ref|YP_002535285.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
 gi|221573107|gb|ACM23919.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
          Length = 636

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 280/589 (47%), Positives = 372/589 (63%), Gaps = 13/589 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A+SI++LKGL+ V+ RP MYIG T G+ GLHH++YEV+DN++DESL GY D I VT
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYIGST-GKRGLHHLVYEVVDNSVDESLAGYCDWIKVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV
Sbjct: 61  LHEDGSVEVEDNGRGIPVDVHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL++R+ R+G IY   +  G     + V G   +  GT V F P   IFS  +F
Sbjct: 121 VNALSEWLEVRVYRDGKIYRQRYERGKPVTLVEVIGET-DKHGTVVRFKPDPLIFSETEF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           + D L+HRLRE++FL   ++I   D+ + E    T  + GG++ FV YL+R KK L    
Sbjct: 180 DPDILEHRLREIAFLVPGLKIEFEDRINNEK--KTFKFDGGLKEFVKYLNRGKKVLHDVI 237

Query: 248 IRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +  +  +        +++A ++ D Y E +L F N I   DGGTH++  ++ LTR +
Sbjct: 238 YLKRTEKVKVKDKEDEVIVEIAFQYTDSYSEEILSFANTIKTVDGGTHVTAFKTTLTRLM 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K    S  GDD REG T+V+S+ + +P F  QTK KL + EV+  V   +
Sbjct: 298 NEYGRKHNFLKNGD-SFQGDDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVNRAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L    +  P   + I+ K++     R+AARRAR++ RRK VL   +LPGKLADCS  
Sbjct: 357 REELKKIFDASPDLVRTILSKIMSTKQAREAARRAREMVRRKNVLQSTTLPGKLADCSST 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D + +ELF+VEGDSAGGSAKQ R R  QA+LP+RGKILNVE++  D++L +++I  +I A
Sbjct: 417 DRENTELFIVEGDSAGGSAKQARDRVFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG D FDINKLRY KIIIMTDAD+DGAHIRTLLLT F+R M  LI +G +YI  PP
Sbjct: 477 VGTGIG-DDFDINKLRYGKIIIMTDADIDGAHIRTLLLTLFYRYMKPLIEDGRIYIALPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY I  GK   YV  +  L +Y       +         G ++   L  
Sbjct: 536 LYRIRVGKEDFYVYSDAELMEYRKMFEGKKMEIQRYKGLGEMNPEQLWE 584



 Score =  170 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 3/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++++ +  +       +  +      ++      +    +    
Sbjct: 453 ILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDINKLRYGKIIIMTDADIDGAHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT-IFSIGRKGISMQRY 739
               +      I   RI      +  +    +   +     L++      G+K + +QRY
Sbjct: 513 LTLFYRYMKPLIEDGRIYIALPPLYRIRVGKEDFYVYSDAELMEYRKMFEGKK-MEIQRY 571

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QLWETT+NP+TR ++RV I DA +AD LF  LMG++   RREFI+ ++L  
Sbjct: 572 KGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHALKV 631

Query: 800 -ALDI 803
             LDI
Sbjct: 632 KELDI 636


>gi|302380141|ref|ZP_07268614.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312083|gb|EFK94091.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 638

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 280/587 (47%), Positives = 385/587 (65%), Gaps = 6/587 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +N  Y AD I +L+GL+ V+ RP MYIG TD E GLHH++YEV+DN+IDE+L G  D+I
Sbjct: 2   KKNREYTADQITVLEGLEPVRVRPGMYIGSTD-EKGLHHLVYEVVDNSIDEALAGVCDLI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+  D S  V D+G GIP + H + G S  E ++T LHAGGKF+  +Y+ SGGLHGVG
Sbjct: 61  KVTIKKDNSIIVEDDGSGIPVETHPKTGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALS++L  R+KR+G +YE  F  G     L V       TGT + F+P   IF  
Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+ + L  R RE++FLN  V+I   D+R  +  +    Y+GGI++FV Y+++ KKPL 
Sbjct: 181 LNFDRNVLAKRFREMAFLNKGVKIEFADER--DGYKELFHYEGGIKSFVEYINKSKKPLD 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              + I+G +D   +++AM++ + Y+E ++ FTNNI   DGGTH+ G +SALTR +  Y 
Sbjct: 239 HEVMYIEGEKDTTKVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL +SE R+VV+S V + L
Sbjct: 299 RNKSILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHL 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S + EE+P   + I++K L +   R AARRARDL R+K VLD  +LPGKLADC   D + 
Sbjct: 359 SFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEY 418

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+FLVEGDSAGGSAK GR  + QAILPLRGKILNVE+A  +++L+S+EI  +ITA GTG
Sbjct: 419 NEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTG 478

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDI+KLRY KI+IMTDADVDGAHIRTLLLTF +R M  L+  G +YI +PPLYGI
Sbjct: 479 IGKN-FDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGI 537

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
            +G  +      E   +  + +               G ++   L +
Sbjct: 538 IKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGEMNAEQLWD 584



 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 14/181 (7%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---VQEQFVLEGSSIFSFGSKYKRI 692
           + L   LN    K+  +  G+    +  + ++  G   +     ++G+ I +    +   
Sbjct: 457 AHLERVLNSEEIKAMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYR 516

Query: 693 FSNRIEE-----NYLTILSLICNGDKI--KITGPCSLLDTIFSIGRK-GISMQRYKGLGE 744
           F   + E          L  I  G K+         L + +   G +  I +QRYKGLGE
Sbjct: 517 FMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGE 576

Query: 745 MNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801
           MNA QLW+TT+NP+ R L++V+I   D ++ D+ F  LMGD VEPRREFI++N++ +  +
Sbjct: 577 MNAEQLWDTTMNPEHRILIKVEIDGEDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNI 636

Query: 802 D 802
           D
Sbjct: 637 D 637


>gi|257388769|ref|YP_003178542.1| DNA gyrase subunit beta [Halomicrobium mukohataei DSM 12286]
 gi|257171076|gb|ACV48835.1| DNA gyrase, B subunit [Halomicrobium mukohataei DSM 12286]
          Length = 641

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 287/596 (48%), Positives = 395/596 (66%), Gaps = 14/596 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q+  Y A+ IQ+L+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MS---QDRDYGAEQIQVLEGLQAVQKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +VSD+GRGIP D H++    A EVIMT LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDEITVTIHEDDSVSVSDDGRGIPVDTHEKHDRPALEVIMTVLHAGGKFDSKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPS 178
           HGVGVSVVNALS WL++ +KR+G +++  F +G  ++ L          +TGT++ F P 
Sbjct: 117 HGVGVSVVNALSKWLEVEVKRDGAVWKQRFDHGEPEDELERVRDMEPDEETGTQIRFWPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +IF   DF Y TL  RLREL+FLNS V+ISL+D+R  +    T  Y+GGI+ FV YL+ 
Sbjct: 177 DEIFEATDFVYSTLASRLRELAFLNSGVEISLVDERDGDS--ETFVYEGGIKEFVQYLNE 234

Query: 239 HKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            K+PL +  I  +         + +++AM+       ++  F NNI  ++GG+H++G ++
Sbjct: 235 TKEPLHRDVIYFEDEEQIEDGPVQVEIAMQGTAELQGSIHAFANNINTREGGSHMTGFKT 294

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR +  Y   +        ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR 
Sbjct: 295 ALTRTVNDYATSNGLLNDLDDTLSGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRG 354

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VES ++DGL  + EE+P  A+ IV K ++A+  R AA++A +LTRRK  L+  +LPGKL
Sbjct: 355 IVESAMHDGLGTFFEENPDTAEAIVGKAVEAAKARKAAKKAEELTRRKSALESTALPGKL 414

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           +DC  RDP  +ELF+VEGDSAGGSAKQGR+ E QAILP+RGKILNVER R D++L +  I
Sbjct: 415 SDCQTRDPDDAELFVVEGDSAGGSAKQGRNPEFQAILPIRGKILNVERHRLDRILENDSI 474

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             +ITALGTGIG D FD+  +RY +II+MTDADVDGAHIRTLLLT F+R M  L+  G++
Sbjct: 475 RNVITALGTGIG-DEFDVEDIRYKRIIMMTDADVDGAHIRTLLLTLFYRHMKPLLEAGYV 533

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589
           Y  +PPLY +           E   +  +  +     +        G ++   L +
Sbjct: 534 YAAQPPLYRVRYNGETYDAMTEAERDRLVEEKCGGDPDQVQRFKGLGEMNPQQLWD 589



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QR+KGLGEMN  QLW+TT++PD R L ++ I DA+ AD +FS LMGD VEPR+EFI+E
Sbjct: 572 QVQRFKGLGEMNPQQLWDTTMDPDQRILKQITIEDAAAADKMFSVLMGDAVEPRKEFIKE 631

Query: 795 NSLPSA-LDI 803
           +S  +  +DI
Sbjct: 632 HSPEADWVDI 641


>gi|116329807|ref|YP_799525.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116123496|gb|ABJ74767.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 641

 Score =  596 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 293/649 (45%), Positives = 422/649 (65%), Gaps = 15/649 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     +SY A  I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+
Sbjct: 1   MSQK--ETSYSASQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +++  +    V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGL
Sbjct: 58  CTEIRISILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V F P + 
Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIVRFKPDAT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYL 236
           IF+  DF +D L  R REL+FLN  + + + D+R              + GGI +FV ++
Sbjct: 177 IFTTVDFQFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNEFQFSGGIVSFVEHI 236

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G R+AL
Sbjct: 237 NENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAAL 295

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ +
Sbjct: 296 TRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGI 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   LPGKLA
Sbjct: 356 MQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLA 415

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LSS+EI 
Sbjct: 416 DCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIR 475

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L++ALGTGIG+D F+INK+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M  +I  G+LY
Sbjct: 476 ILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           + +PPLY I  GK+  Y   ++  E+ L N    + +       G ++   L        
Sbjct: 536 VAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWET----- 590

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +D   +         F+E      +   +  Q     +    A   N 
Sbjct: 591 TMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANL 639



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 17/240 (7%)

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           K V+    L   + D  + D    + Y     +    A      N ++   +   + +  
Sbjct: 402 KTVLEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 461

Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
             RL+ I    E     S     I   +  + +I R  +   + +     S        F
Sbjct: 462 KARLDKILSSEEIRILVSALGTGIGEDEFNINKI-RYHKIMIMTDADIDGSHIRTLLLTF 520

Query: 694 SNR-----IEENYL----TILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLG 743
             R     IE+ YL      L LI +G             + + ++G + + +QRYKGLG
Sbjct: 521 FFRYMRPVIEKGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLG 580

Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802
           EMN  QLWETT++P  R +L+VK+ D  +A++ F+ LMGDEV+PR++FI+ N +  + LD
Sbjct: 581 EMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANLD 640


>gi|261878836|ref|ZP_06005263.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella bergensis
           DSM 17361]
 gi|270334578|gb|EFA45364.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella bergensis
           DSM 17361]
          Length = 657

 Score =  596 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 276/653 (42%), Positives = 397/653 (60%), Gaps = 16/653 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N++   +Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MAENLKREENYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I VT+N D SCTV DNGRGIP D H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCDHIEVTINEDNSCTVEDNGRGIPVDQHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +  ++ R+G  Y+  +  G    P+ V G+  +  GT   F P  
Sbjct: 120 LHGVGVSCVNALSARMLSQVFRDGKAYQQEYEKGKPLYPVKVIGNT-DKRGTRQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236
            IF+ + F +D +  R+REL++LN+ ++I+L         + R+     K G++ FV Y+
Sbjct: 179 TIFTTRTFQWDIVARRMRELAYLNAGIKITLTDLRPNEDGKIRQEVFHAKDGLKEFVRYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  +  + I++A+ +N  Y EN+  + NNI   +GGTH++G R AL
Sbjct: 239 DRHRTHLFDDVIYLKTEKQGVPIEVAIMYNTDYSENLHSYVNNINTIEGGTHVTGFRQAL 298

Query: 297 TRQITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +         +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 TRVLKNYADNDPQIAKQIEKAKVEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V   V + L+ +LEEHP EAK I +KV+ A+  R AAR+AR+  +RK V+    LPG
Sbjct: 359 TGAVNQAVGEALTNYLEEHPTEAKQICEKVVLAATARVAARKARESVQRKSVMTGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ ++ ++  ++
Sbjct: 419 KLADCSNKDPKLCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478

Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 SVMNIIQSIGVRFGVDGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538

Query: 528 LIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           +I  G LYI  PPLY    +GK+ +Y  +E     Y    +  EE      ++      +
Sbjct: 539 IIEEGHLYIATPPLYKCTYKGKNSEYCYNEGQRLAYFQKYANGEEDSKNIHTQRYKGLGE 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           +         +D   +       +   E      +   +  +     + +  A
Sbjct: 599 MNPDQLWETTMDPANRLLKQVTIENAAEADETFSMLMGDDVEPRREFIEANAA 651



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 54/75 (72%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
               K I  QRYKGLGEMN  QLWETT++P  R L +V I +A++AD+ FS LMGD+VEP
Sbjct: 582 EEDSKNIHTQRYKGLGEMNPDQLWETTMDPANRLLKQVTIENAAEADETFSMLMGDDVEP 641

Query: 788 RREFIQENSLPSALD 802
           RREFI+ N+  + +D
Sbjct: 642 RREFIEANAAYANID 656


>gi|328943452|ref|ZP_08240917.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Atopobium vaginae
           DSM 15829]
 gi|327491421|gb|EGF23195.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Atopobium vaginae
           DSM 15829]
          Length = 650

 Score =  596 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 282/553 (50%), Positives = 379/553 (68%), Gaps = 12/553 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M    + SSY  + I++L+GLD V+KRP MYIG T   SGLHH+++E++DN++DE++ GY
Sbjct: 1   MFVTKEVSSYGGNEIKVLEGLDPVRKRPGMYIGTTSA-SGLHHLVWEIVDNSVDEAMAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S +V DNGRGIP ++H ++ I   EV++T LHAGGKF+  +YKVSGGL
Sbjct: 60  CTSINVIVHPDNSISVEDNGRGIPVEMHPQKKIPTLEVVLTILHAGGKFDNAAYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L  R+ R+G I+EM F  G +   +   G + + TGT +TF P   
Sbjct: 120 HGVGVSVVNALSKRLIARVSRDGGIFEMEFKRGKVTKKMTRVGDSSH-TGTTITFWPDDT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +N+DTL  RL+E +FLN ++ ISL D+R   PR+    Y GGI  FV YL+  K
Sbjct: 179 IFETTTYNFDTLHDRLQETAFLNKNLHISLTDEREETPRKEEFCYSGGIVDFVKYLNEEK 238

Query: 241 K--PLMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
              P +  PI I+GS            ++++++WN  Y E+V+ F N+I   +GG HL G
Sbjct: 239 TILPGLNDPIYIEGSSAPDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEG 298

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALT+ I  Y       K+ + ++ GDD REG  +++S+K+PDP+F  QTK KL SS 
Sbjct: 299 FRSALTKTINDYARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSY 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +R++    V  GL+ +LEEHP +AK I KK   A+  R AA+RAR + RRKG+L+ ASLP
Sbjct: 359 MRTLTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS RD + +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNVER + D+ LSS
Sbjct: 419 GKLADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSS 478

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           + I +LITA+GTG+G++ F+I K RYHKI+IMTDADVDGAHIR LLLTFF+R M  L+  
Sbjct: 479 ESITSLITAIGTGVGKE-FNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDA 537

Query: 532 GFLYIIKPPLYGI 544
           G++Y+ +PPLY I
Sbjct: 538 GYIYVAQPPLYQI 550



 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 155/470 (32%), Gaps = 41/470 (8%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD----PKKS 425
                   + +       +  +    R+ T RK     +            +    P  +
Sbjct: 186 NFDTLHDRLQETAFLNKNLHISLTDEREETPRKEEFCYSGGIVDFVKYLNEEKTILPGLN 245

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           +   +EG SA         R    +        +     F   + + E G  +    + +
Sbjct: 246 DPIYIEGSSA--PDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEGFRSAL 303

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP 539
            +   D    R HK++   +A++ G  IR  L      ++P     G          ++ 
Sbjct: 304 TKTINDY--ARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSYMRT 361

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--------IELFCDSKGVISKNDLRNFI 591
               I      +Y+++  +    +  ++                   KG++    L   +
Sbjct: 362 LTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLPGKL 421

Query: 592 DDALKIDKLIKDF----------YPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKL 638
            D    D  + +                +    QAV+     + N E  Q+     +  +
Sbjct: 422 ADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSSESI 481

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
            + +  I     K ++        +V      V    +      F +      + +  I 
Sbjct: 482 TSLITAIGTGVGKEFNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDAGYIY 541

Query: 699 ENYLTILSLICNGDKIKI---TGPCSLLDT-IFSIGRKGISMQRYKGLGEMNASQLWETT 754
                +  +   G K      T     L+   F    K  S+QRYKGLGEM+  QLW TT
Sbjct: 542 VAQPPLYQIKAKGKKYGKYLYTDEELALEAKQFEDSSK-YSVQRYKGLGEMDPEQLWSTT 600

Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           + P  R +LRV + DA +A+   + LMG +VE R++FIQ ++     LDI
Sbjct: 601 MEPKNRIMLRVTVDDAREAERAVANLMGTQVEKRKDFIQTHAKDVRFLDI 650


>gi|312142414|ref|YP_003993860.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903065|gb|ADQ13506.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus']
          Length = 640

 Score =  596 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 285/587 (48%), Positives = 398/587 (67%), Gaps = 4/587 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + S+Y+A+ IQ+L+GL+AV+KRP MYIG T  E GLHH++YEV+DN+IDE++ GY   I
Sbjct: 4   KERSNYEAEHIQVLEGLEAVRKRPGMYIGSTSTE-GLHHLVYEVVDNSIDEAMAGYCTEI 62

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +       V DNGRGIP + H +    A EV+MT LHAGGKF  + YKVSGGLHGVG
Sbjct: 63  IVEIQPGNIIKVKDNGRGIPVENHPKIDKPAVEVVMTTLHAGGKFGGEGYKVSGGLHGVG 122

Query: 125 VSVVNALSSWLKLRI-KREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIF 182
           +SVVNAL+ W+++ I  ++G +Y+  +  G+  + L   GS  +D TGT + F     IF
Sbjct: 123 ISVVNALTEWMEVEIAWKDGKVYKQKYERGVPQHELRAIGSCDSDCTGTTIEFKADPQIF 182

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              D+ Y  L  RL+EL+FLN  ++I +ID R  E +E    Y GG+ +FV YL++ KKP
Sbjct: 183 EEIDYEYRNLAQRLKELAFLNKGLKIKIIDSRVDETKEDEYQYDGGLVSFVKYLNQSKKP 242

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L   PI ++   +  S+++A++++ GY+ ++  F NNI  K+GGTHLSG +SA+TR    
Sbjct: 243 LYPDPIYLETEGEEGSLEVAIQYHQGYNSSIFSFANNINTKEGGTHLSGFKSAITRTFND 302

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K    K    +  G D REG T+++S+K+ DP+F  QTK KL +SE+R  V+S V+ 
Sbjct: 303 YARKKNILKDSDDNFKGQDIREGMTAIISVKLADPQFEGQTKTKLGNSEMRGFVDSAVSS 362

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +LEE+P  AK+IV K L A+  R AAR+ARDLTRRK  L   +LPGKLADC++R  
Sbjct: 363 FLKTFLEENPKIAKVIVDKALSAARARKAARKARDLTRRKSALTSTALPGKLADCAKRQA 422

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           K +E+++VEGDSAGGSAKQGR+RE QAILPL+GKILNVE++R +K+L++ EI  LITA+G
Sbjct: 423 KDTEVYIVEGDSAGGSAKQGRNREFQAILPLKGKILNVEKSRLNKILNNDEIRALITAIG 482

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG+  + FDIN LRY +IIIMTDAD+DGAHIRTLLLTFF+R M  L+ NG +YI +PPLY
Sbjct: 483 TGV-AEEFDINNLRYERIIIMTDADIDGAHIRTLLLTFFYRYMRPLLENGNIYIAQPPLY 541

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            + +G+  +YV ++++L++ L                G ++   L +
Sbjct: 542 KVKKGRKEEYVYNDKALKELLDEIGRDRVSMQRYKGLGEMNPGQLWD 588



 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 93/179 (51%), Gaps = 14/179 (7%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGS 687
            +RLN I    E          G     DI   R  R +      ++G+ I +    F  
Sbjct: 462 KSRLNKILNNDEIRALITAIGTGVAEEFDINNLRYERIIIMTDADIDGAHIRTLLLTFFY 521

Query: 688 KYKR-IFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
           +Y R +  N         L  +  G K + +    +L + +  IGR  +SMQRYKGLGEM
Sbjct: 522 RYMRPLLENGNIYIAQPPLYKVKKGRKEEYVYNDKALKELLDEIGRDRVSMQRYKGLGEM 581

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           N  QLW+TT++PD R LL+V I DA  AD+ FS LMGD+VEPRR+FIQEN+     LD+
Sbjct: 582 NPGQLWDTTMDPDNRILLQVNIEDAILADETFSILMGDKVEPRRKFIQENAAQVKNLDV 640


>gi|56961788|ref|YP_173510.1| DNA gyrase subunit B [Bacillus clausii KSM-K16]
 gi|56908022|dbj|BAD62549.1| DNA gyrase subunit B [Bacillus clausii KSM-K16]
          Length = 641

 Score =  596 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 288/592 (48%), Positives = 401/592 (67%), Gaps = 6/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  N QN +YD   IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN+IDE++ G+
Sbjct: 1   MLVNEQNQTYDESQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNSIDEAMAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+    + TV DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGL
Sbjct: 60  CDEIKVTIEEGNALTVEDNGRGIPVGIQEKMGRPAVEVIMTTLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ L + +  +G I+  S+  G+ D  L V G   + TGT +TF P  +
Sbjct: 120 HGVGASVVNALSTHLTVNVHLDGKIHSQSYSRGVPDADLTVIGET-DKTGTTITFQPDPE 178

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF    +F+Y+TL  R+REL+FLN  + I + DKR+ + ++ T  Y+GGI +FV +L+R 
Sbjct: 179 IFRETVEFDYETLAARIRELAFLNKGLTIKIEDKRTEDGKKATYHYEGGISSFVKHLNRS 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L + PI ++  +D IS+++A+++NDG+  ++  F NNI   +GGTH SG ++ LTR 
Sbjct: 239 KETLHEEPIYVESEKDGISVEVAVQYNDGFTSSIYSFANNINTHEGGTHESGFKTGLTRV 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K++  ++ G+D REG T+++S+K+P+P+F  QTK KL +SE R++ +S 
Sbjct: 299 INDYARKNGLFKENDPNLSGEDVREGLTAIISVKIPEPQFEGQTKTKLGNSEARTITDSL 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++  + +L E+P  A+ IV K L AS  R+AA++AR+LTRRK  L+++SLPGKL DC+ 
Sbjct: 359 FSESFARFLSENPGVARKIVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLTDCTS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D   SELF+VEGDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L++ EI  +IT
Sbjct: 419 KDASISELFIVEGDSAGGSAKGGRDPHFQAILPLRGKILNVEKARLDKILANNEIRMIIT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTGIG D FDI+K RYHKI+IMTDADVDGAHIRTL+LTFF+R M  L+ NG++YI +P
Sbjct: 479 AIGTGIG-DEFDISKARYHKIVIMTDADVDGAHIRTLILTFFYRYMRELLENGYVYIAQP 537

Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY I   +        D E           S+         G ++   L  
Sbjct: 538 PLYKIEQGKNNVTYVYSDRELDAHLATVADRSKVSVQRYKGLGEMNAGQLWE 589



 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +  I       +  S      +V      V    +    
Sbjct: 456 ILNVEKARLDKILANNEIRMIITAIGTGIGDEFDISKARYHKIVIMTDADVDGAHIRTLI 515

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIG-RKGISMQR 738
             F +    + + +  +      +  +    + +  +     L   + ++  R  +S+QR
Sbjct: 516 LTFFYRYMRELLENGYVYIAQPPLYKIEQGKNNVTYVYSDRELDAHLATVADRSKVSVQR 575

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMNA QLWETT++P  R++L+V + DA +AD++F  LMGD VEPRR+FIQEN+  
Sbjct: 576 YKGLGEMNAGQLWETTMDPQVRNMLQVTLADAIKADEIFEILMGDRVEPRRDFIQENAHY 635

Query: 799 S-ALDI 803
              LD+
Sbjct: 636 VKNLDV 641


>gi|212637854|ref|YP_002314374.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1]
 gi|212559334|gb|ACJ32389.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1]
          Length = 640

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 299/592 (50%), Positives = 402/592 (67%), Gaps = 7/592 (1%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+ +  +   YD   IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE+L G
Sbjct: 1   MTMEQREQIVYDESQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I V +  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF    YKVSGG
Sbjct: 60  FCTEINVIVEEDNSITVIDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS  L++ + R+GNI+   +  G+  + L V G   + TGT + F P  
Sbjct: 120 LHGVGASVVNALSEELEVYVHRDGNIHYQKYKRGVPCSDLQVVGET-DRTGTTIHFKPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    ++YDTL HRLREL+FLN  ++I+L D+R    R     Y+GGI ++V +L+R
Sbjct: 179 EIFTETTEYDYDTLAHRLRELAFLNKGIRITLEDRRGENRRNEYY-YEGGISSYVKHLNR 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L + PI I+G +D I +++A+++NDGY  N+  F NNI   +GGTH  G ++ALTR
Sbjct: 238 TKETLHEEPIYIEGEKDGIQVEIALQYNDGYTSNIYSFANNIHTHEGGTHELGFKTALTR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K+   K    ++ G+D REG T+++S+K P P+F  QTK KL +S+ R+  ES
Sbjct: 298 IINDYGRKNNMFKDQDANLTGEDVREGLTAIISVKHPAPQFEGQTKTKLGNSDARTATES 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              +    +L E+P  AK IV+K + AS  R AA+RAR+LTRRK  L+++SLPGKLADCS
Sbjct: 358 IFAEQFEKFLLENPSVAKKIVEKGILASRARLAAKRARELTRRKNALEVSSLPGKLADCS 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP   EL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE++R DK+LS+ E+  +I
Sbjct: 418 SRDPAICELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKSRLDKILSNNEVRAII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGIG+D FDI K RYHKIIIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +
Sbjct: 478 TALGTGIGED-FDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREVIEQGYVYIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY I +GK ++Y   +  LE+ L       + +       G ++   L  
Sbjct: 537 PPLYKIQQGKRIEYAYSDRQLEEILTRLPEQPKPVIQRYKGLGEMNPEQLWE 588



 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 81/333 (24%), Positives = 139/333 (41%), Gaps = 39/333 (11%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEES 558
           DA++ G  +R  L      + P+    G           +     I   +  +++ +  S
Sbjct: 313 DANLTGEDVREGLTAIISVKHPAPQFEGQTKTKLGNSDARTATESIFAEQFEKFLLENPS 372

Query: 559 LEDYLINQSL--------SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
           +   ++ + +        ++        K  +  + L   + D    D  I + Y     
Sbjct: 373 VAKKIVEKGILASRARLAAKRARELTRRKNALEVSSLPGKLADCSSRDPAICELYVVEGD 432

Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILV 664
           +    A      + ++   +   + +   +RL+ I   +E          G   + DI  
Sbjct: 433 SAGGSAKQGRDRHFQAILPLRGKIINVEKSRLDKILSNNEVRAIITALGTGIGEDFDITK 492

Query: 665 KRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNRIEENY----LTILSLICNGDKIK 715
            R  + +      ++G+ I +    F  +Y R     IE+ Y       L  I  G +I+
Sbjct: 493 ARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREV---IEQGYVYIAQPPLYKIQQGKRIE 549

Query: 716 ITG----PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
                     +L  +    +    +QRYKGLGEMN  QLWETT+NP+TR+LL+V + DA 
Sbjct: 550 YAYSDRQLEEILTRLPEQPK--PVIQRYKGLGEMNPEQLWETTMNPETRTLLKVSLQDAM 607

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +AD+ F  LMGD+VEPRR+FI+EN+     LDI
Sbjct: 608 EADETFEILMGDKVEPRRQFIEENAKYVKNLDI 640


>gi|323343849|ref|ZP_08084076.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
 gi|323095668|gb|EFZ38242.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
          Length = 672

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 276/650 (42%), Positives = 395/650 (60%), Gaps = 16/650 (2%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+D     ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++ E +DN+IDE++ G
Sbjct: 16  MADIQNNENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 74

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV DNGRGIP D HK+   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 75  YCTDIEVTINEDESITVQDNGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 134

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALSS +  ++ R+G IY+  +  G    P+ V G   +  GT   F P  
Sbjct: 135 LHGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVMG-TTDKRGTRQQFWPDK 193

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLID---KRSPEPREITMFYKGGIEAFVSYL 236
            IF+   + +D +  R+REL++LN+ ++I+L D       +PR      K G++ FV Y+
Sbjct: 194 TIFTTIHYQWDIIARRMRELAYLNAGIKITLTDLRANEEGKPRVEVFHAKDGLKEFVRYV 253

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  +  I I++A+ +N  Y EN+  + NNI   +GGTHLSG R+AL
Sbjct: 254 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLSGFRTAL 313

Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 314 TRVLKAYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 373

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + L+ +LEEHP EAK I +KV+ A+  R AAR+AR+  +RK  +    LPG
Sbjct: 374 SGAVQQAVGEALTNYLEEHPAEAKKICEKVVLAATARIAARKARESVQRKNFMSGGGLPG 433

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ ++ ++  ++
Sbjct: 434 KLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 493

Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 494 SVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 553

Query: 528 LIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           +I +G LYI  PPLY  +    + +Y   E+  + +    +  +E      ++      +
Sbjct: 554 VIEDGHLYIANPPLYKCSYKNKVSEYCYTEQQRQAFFDKYANGDEDAKSIHTQRYKGLGE 613

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           +         +D   +     + +   E   I  +   +  +     +  
Sbjct: 614 MNPDQLWETTMDPKSRLLKQVNIENAAEADEIFSMLMGDDVEPRREFIEQ 663



 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 57/71 (80%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I  QRYKGLGEMN  QLWETT++P +R L +V I +A++AD++FS LMGD+VEPRREF
Sbjct: 601 KSIHTQRYKGLGEMNPDQLWETTMDPKSRLLKQVNIENAAEADEIFSMLMGDDVEPRREF 660

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 661 IEQNATYANID 671


>gi|169830224|ref|YP_001716206.1| DNA gyrase subunit B [Candidatus Desulforudis audaxviator MP104C]
 gi|169637068|gb|ACA58574.1| DNA gyrase, B subunit [Candidatus Desulforudis audaxviator MP104C]
          Length = 635

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 302/592 (51%), Positives = 406/592 (68%), Gaps = 12/592 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  N   S Y A+ IQ+L+GL+AV+KRP MYIG T G  GLHH+I+EV+DN+IDE+L G+
Sbjct: 1   MDKN--GSGYRAEDIQVLEGLEAVRKRPGMYIGST-GPKGLHHLIFEVVDNSIDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S TVSDNGRGIP D+H + G  A EV++TRLHAGGKF    YK+SGGL
Sbjct: 58  CDYIEVVIHADNSVTVSDNGRGIPVDIHPQVGRPALEVVLTRLHAGGKFGGTQYKISGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  +++ +KREG  Y   F  G+    L +   A ++TGT VTF+P  D
Sbjct: 118 HGVGVSVVNALSRRMEVEVKREGYRYRQEFERGLATGELELLDEA-DETGTRVTFIPDPD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F YD +  RLRELSFLN+ V + L D+R+   R+    Y GGI  FV +L+ HK
Sbjct: 177 IFEEVEFQYDVVAKRLRELSFLNAGVTLVLRDERTG--RDKVYQYAGGIRDFVRHLNLHK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + L   PI ++  ++ + +++A+++  +   E +  + N I   DGGTH +G +SALTR 
Sbjct: 235 EVLPADPIYVEDHKNGVWVEVAVQYVVNSDRELIFSYANTIHTVDGGTHEAGFKSALTRT 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K   +     S+ G+D REG T+V+++K+P+P+F  QTK KL +SEVR +V+  
Sbjct: 295 INDYARK--YNLVKNDSLSGEDIREGLTAVINVKVPEPQFEGQTKTKLGNSEVRGLVDWV 352

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V+  L+A+LEEHP EA+ IV++ + AS  R+AARRAR+LT+RK +L+ A+LPGKLADCS 
Sbjct: 353 VSQRLAAYLEEHPTEARQIVQRAVVASRAREAARRARELTKRKSLLESATLPGKLADCSR 412

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP+ SEL+LVEGDSAGGSAKQGR RE QAILPLRGKILN E+AR DK+L ++EI  LIT
Sbjct: 413 RDPQHSELYLVEGDSAGGSAKQGRDREFQAILPLRGKILNAEKARRDKLLGNEEIRALIT 472

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTG G+D FD+ K RYH+I+IMTDADVDG+HIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 473 AIGTGFGED-FDLAKARYHRIVIMTDADVDGSHIRTLLLTFFYRYMKPLIDAGYVYIAQP 531

Query: 540 PLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +     K+  Y+  ++ LE +                 G ++   L +
Sbjct: 532 PLYRVSGKGRKNGVYLYSDQQLEQFFRENGRQNWSIQRYKGLGEMNPEQLWD 583



 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  I     + +  +      +V      V    +    
Sbjct: 450 ILNAEKARRDKLLGNEEIRALITAIGTGFGEDFDLAKARYHRIVIMTDADVDGSHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSLLDTIFSIGRKGISMQR 738
             F +      I +  +      +  +   G K  + +     L       GR+  S+QR
Sbjct: 510 LTFFYRYMKPLIDAGYVYIAQPPLYRVSGKGRKNGVYLYSDQQLEQFFRENGRQNWSIQR 569

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLW+TTL+P+ R++L+V + DA  A+ L S LMG++VEPRREFIQ+++  
Sbjct: 570 YKGLGEMNPEQLWDTTLDPENRTMLQVTLEDALAAEQLLSTLMGEQVEPRREFIQQHARE 629

Query: 799 S-ALDI 803
              LDI
Sbjct: 630 VRNLDI 635


>gi|303235765|ref|ZP_07322372.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN]
 gi|302484212|gb|EFL47200.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN]
          Length = 683

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 274/607 (45%), Positives = 388/607 (63%), Gaps = 20/607 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+DN++N ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 28  MADNLENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 86

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV D+GRGIP D H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 87  YCSHIEVTINEDNSITVEDDGRGIPVDEHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 146

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALSS +  ++ R G IY+  +  G     + + G   + TGT   F P +
Sbjct: 147 LHGVGVSCVNALSSHMMSQVFRNGKIYQQEYEKGKPLYSVKIVGDT-DKTGTRQQFWPDA 205

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236
            IF+   + +D +  R+REL+FLN+ ++I+L         + ++     + G++ FV Y+
Sbjct: 206 SIFTTTIYQWDIVARRMRELAFLNAGIKITLTDLRPNEEGKTKQEVFHAQEGLKEFVRYV 265

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  +  I I++A+ +N+ Y+EN+  + NNI   +GGTHL+G R+AL
Sbjct: 266 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNNDYNENIHSYVNNINTIEGGTHLTGFRTAL 325

Query: 297 TRQITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +         +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 326 TRTLKAYADNDTQIAKQIEKAKIEITGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 385

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + LS +LEE+P EAK+I  KV+ A+  R AAR+AR+  +RK V+    LPG
Sbjct: 386 SGAVQQAVGEALSYYLEENPAEAKLICDKVILAATARIAARKARESVQRKNVMTGGGLPG 445

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK+ E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ +  ++  ++
Sbjct: 446 KLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAE 505

Query: 473 EIGTLITALGTGIGQD-----SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G D       + +KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 506 SVMNIIQSIGVRFGVDGESDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPR 565

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-----IELFCDSKGVI 582
           +I  G LYI  PPLY  T  K  +Y   E+    +L      +E             G +
Sbjct: 566 VIEEGHLYIATPPLYKCTFKKVSEYCYTEQQRLQFLEKYVGGDEENKALHTQRYKGLGEM 625

Query: 583 SKNDLRN 589
           +   L +
Sbjct: 626 NPEQLWD 632



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 56/75 (74%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
               K +  QRYKGLGEMN  QLW+TT+NP TR L +V I +A+ AD++FS LMGD+VEP
Sbjct: 608 DEENKALHTQRYKGLGEMNPEQLWDTTMNPKTRLLKQVTIENATTADEMFSMLMGDDVEP 667

Query: 788 RREFIQENSLPSALD 802
           RREFI++N+  + +D
Sbjct: 668 RREFIEQNATYANID 682


>gi|321401254|gb|ADW83038.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 641

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 292/646 (45%), Positives = 422/646 (65%), Gaps = 13/646 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N + +SY A  I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   
Sbjct: 2   NQKETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +++  +    V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGV
Sbjct: 61  IRISILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V F P + IF+
Sbjct: 121 GVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIVRFKPDATIFT 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRH 239
             DF +D L  R REL+FLN  + + + D+R              + GGI +FV +++ +
Sbjct: 180 TVDFQFDILSARFRELAFLNKGLVLIIEDRRRGAEGENLLRNEFQFSGGIVSFVEHINEN 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G R+ALTR 
Sbjct: 240 KHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTRT 298

Query: 300 ITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
           +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ ++++
Sbjct: 299 LNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQT 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   LPGKLADCS
Sbjct: 359 LSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LSS+EI  L+
Sbjct: 419 EKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVLV 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           +ALGTGIG+D F+INK+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M  +I  G+LY+ +
Sbjct: 479 SALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLYVAQ 538

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK+  Y   ++  E+ L N    + +       G ++   L         +D
Sbjct: 539 PPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWET-----TMD 593

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +         F+E      +   +  Q     +    A   N 
Sbjct: 594 PSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANL 639



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 17/240 (7%)

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           K V+    L   + D  + D    + Y     +    A      N ++   +   + +  
Sbjct: 402 KTVLEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 461

Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
             RL+ I    E     S     I   +  + +I R  +   + +     S        F
Sbjct: 462 KARLDKILSSEEIRVLVSALGTGIGEDEFNINKI-RYHKIMIMTDADIDGSHIRTLLLTF 520

Query: 694 SNR-----IEENYL----TILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLG 743
             R     IE+ YL      L LI +G             + + ++G + + +QRYKGLG
Sbjct: 521 FFRYMRPVIEKGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLG 580

Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802
           EMN  QLWETT++P  R +L+VK+ D  +A++ F+ LMGDEV+PR++FI+ N +  + LD
Sbjct: 581 EMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANLD 640


>gi|33862190|ref|NP_893751.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634408|emb|CAE20093.1| DNA gyrase, subunit B [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 655

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 280/653 (42%), Positives = 399/653 (61%), Gaps = 19/653 (2%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+    N  ++ Y AD IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+
Sbjct: 1   MSEEKRSNKISNDYGADQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+ D I + L  DGS  +SDNGRGIPTD+H   G SA E ++T LHAGGKF    YKV
Sbjct: 60  LAGHCDHIEIVLKEDGSALISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVT 174
           SGGLHGVG+SVVNALS W+ + + R+G  +   F  GI    L            GT + 
Sbjct: 120 SGGLHGVGISVVNALSEWVHVTVSRDGYEFNQRFEKGIAKGELKSQKQQKKPFRKGTTIC 179

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
           F P + IF+    F+Y  L  RLREL++LN  V+I   D+R        +E    Y GGI
Sbjct: 180 FKPDTSIFTDGIKFDYALLSSRLRELAYLNGGVKIIFRDERQNLSDGSFKEEIYLYDGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V Y+++ K+ +    I +   +DN+ ++ A++W  D Y +N+L F NNI   DGGTH
Sbjct: 240 KEYVEYINKEKESIHSEVIYVDSQKDNVYVEAALQWCSDVYSDNILGFANNIRTIDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR   +  +K    K+  +++ G++ REG T VLS+K+P+P F  QTK KL 
Sbjct: 300 IDGLKTVLTRTFNAIAKKRGKRKEVDKNLSGENIREGLTVVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S + + L  ++E +P    +I++K + +    +AA+RARDL RRK VL+ +
Sbjct: 360 NTEVRGIVDSLIGESLIKYMEFNPNVFDLILEKAIQSFNAAEAAKRARDLVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP  +E+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSGAEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI +LITALG GI  + F++N LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQSLITALGLGIKGEEFNVNSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRDL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  GF+YI  PPLY + RGK+ +Y  +E  L+  + +               G +    L
Sbjct: 540 VEKGFIYIACPPLYKVERGKNHKYCYNENQLKQTIEDFGEKANYNIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            +       ++   +       +  +E   I  +   +        + +  AN
Sbjct: 600 WDT-----TMNPQTRMMKRVEIEDALEADRIFNILMGDKVAPRREFIETHSAN 647



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 128/329 (38%), Gaps = 35/329 (10%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDY 562
           D ++ G +IR  L      ++P     G     +    + GI      + +         
Sbjct: 325 DKNLSGENIREGLTVVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLIGESLIKYMEFNPN 384

Query: 563 LINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQAV 617
           + +  L + I+ F  ++      DL  R  + ++  +   + D         + +I +  
Sbjct: 385 VFDLILEKAIQSFNAAEAAKRARDLVRRKSVLESSTLPGKLADCSSRDPSGAEIYIVEGD 444

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINNS 660
            +G    +       ++       LN       K +                     N +
Sbjct: 445 SAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEEFNVN 504

Query: 661 DILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNR-IEENYLTILSLICNGDKIK 715
            +   R+   +     ++G+ I +    F  +Y+R    +         L  +  G   K
Sbjct: 505 SLRYHRVV--IMTDADVDGAHIRTLLLTFFYRYQRDLVEKGFIYIACPPLYKVERGKNHK 562

Query: 716 -ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
                  L  TI   G K   ++QR+KGLGEM   QLW+TT+NP TR + RV+I DA +A
Sbjct: 563 YCYNENQLKQTIEDFGEKANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEA 622

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALD 802
           D +F+ LMGD+V PRREFI+ +   + LD
Sbjct: 623 DRIFNILMGDKVAPRREFIETH--SANLD 649


>gi|313887747|ref|ZP_07821429.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846356|gb|EFR33735.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 637

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 292/591 (49%), Positives = 396/591 (67%), Gaps = 8/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ +     YDA  IQ+L+GLD V+KRP MYIG T G  GLHH++YE++DN+IDE+L G 
Sbjct: 1   MAKD--KRHYDASDIQVLEGLDPVRKRPGMYIGST-GPRGLHHLVYEIVDNSIDEALAGI 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I + +N +GS  ++DNG GIP D+H + G S  E ++T LHAGGKF+  +YKVSGGL
Sbjct: 58  CDHIIIKINKNGSVEITDNGSGIPVDIHPQTGKSTVETVLTILHAGGKFDNSAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS+ L   +KR G IY   F  GI  + L V G    ++TGT + F P  
Sbjct: 118 HGVGVSVVNALSNKLVATVKRNGKIYRQEFARGIRKSDLEVIGETNTDETGTTIYFEPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF   +F+ + L  R RE++FLN  ++I  ID+R  +       Y+GGI++FV +++  
Sbjct: 178 TIFETVEFSDEVLAKRFREMAFLNKGIKIEFIDER--KDLNEVFHYEGGIKSFVEFINAK 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KKP+    I I   R+  ++++A+++ D Y E VL F NNI  ++GGTHLSG RSALTR 
Sbjct: 236 KKPVHDEIIYIDEIREETAVEIAIQYTDSYSEVVLSFANNINTEEGGTHLSGFRSALTRT 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  Y  K+   K+ + ++ G+D REG ++V+S+K+PDP+F  QTK KL +SE R +V+S 
Sbjct: 296 LNDYGRKNNIIKEKEENLSGEDVREGISAVISVKLPDPQFEGQTKGKLGNSETRGIVDSV 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +++ L+ +LEE+P   K I+ K L A   R+AAR+ARDLTR+K  L+  +LPGKLADC  
Sbjct: 356 LSEDLAVFLEENPRVGKQILDKALSARRAREAARKARDLTRKKNNLESMTLPGKLADCQN 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DPK++E+FLVEG+SAGGSAK GR    QAILPLRGKI+NVE+AR D+ML+S EI  +IT
Sbjct: 416 DDPKRNEIFLVEGNSAGGSAKDGRDSAYQAILPLRGKIMNVEKARLDRMLNSSEIRAMIT 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG++ FD+ KLRY KIIIMTDADVDGAHI TLLLTFFFR M  LI  G +Y+ + 
Sbjct: 476 AFGTGIGEE-FDLEKLRYDKIIIMTDADVDGAHIMTLLLTFFFRYMKPLIEEGHVYVAQA 534

Query: 540 PLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLYGI +G  + +Y  +E+ L   L     S+         G +    L  
Sbjct: 535 PLYGIEKGTKILRYCHNEKELRLALKEYKDSKVNIKRYKGLGEMDPEQLWE 585



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 14/199 (7%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + N    + +  +  + +    +    + +K           +
Sbjct: 447 LPLRGKIMNVEKARLDRMLNSSEIRAMITAFGTGIGEEFDLEKLRYDK-----------I 495

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI--KITGPCS 721
           +      V    ++     F F      I    +       L  I  G KI         
Sbjct: 496 IIMTDADVDGAHIMTLLLTFFFRYMKPLIEEGHVY-VAQAPLYGIEKGTKILRYCHNEKE 554

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L   +       ++++RYKGLGEM+  QLWETT+NPD R LL+V I D ++ADD FS LM
Sbjct: 555 LRLALKEYKDSKVNIKRYKGLGEMDPEQLWETTMNPDNRLLLKVNIDDLAEADDTFSILM 614

Query: 782 GDEVEPRREFIQENSLPSA 800
           G EVEPRR+FI EN++ + 
Sbjct: 615 GTEVEPRRDFITENAVYAD 633


>gi|194476918|ref|YP_002049097.1| DNA topoisomerase IV subunit B [Paulinella chromatophora]
 gi|171191925|gb|ACB42887.1| DNA topoisomerase IV subunit B [Paulinella chromatophora]
          Length = 652

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 296/658 (44%), Positives = 406/658 (61%), Gaps = 17/658 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M D+ +  + Y A+ IQ+L+GL  V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MIDSSKVQADYGAEQIQVLEGLAPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V+L+ DGS T+SDNGRGIPTD+H   G SA E ++T LHAGGKF   SYKVSGG
Sbjct: 60  HCDEILVSLSEDGSATISDNGRGIPTDIHPHTGKSALETVLTVLHAGGKFGGDSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WL++ + R+  ++   F  G+    L       N TGT +TF P +
Sbjct: 120 LHGVGVSVVNALSEWLEVTVYRKSQLHHQRFERGVPIGLLTAQPGEENRTGTSLTFKPDT 179

Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAF 232
            IF+    F+Y TL  RLREL++LN  V+IS  D+R      +    E    YKGGI+ +
Sbjct: 180 KIFTTSITFDYSTLAGRLRELAYLNGGVRISFRDERISSGGENGIAYEEVYCYKGGIKEY 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSG 291
           V+Y+++ K PL    I +   +D + ++ A++W  D Y +++L F NNI   DGGTH+ G
Sbjct: 240 VAYINKEKDPLHSEIIYVNSHKDGVQVEAALQWCVDTYSDSILGFANNIRTVDGGTHIEG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           L++ LTR + S+ +K    K    ++ G++ REG T+VLS+K+PDP F  QTK KL ++E
Sbjct: 300 LKTVLTRTLNSFAKKRGKRKDSDNNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTE 359

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR +V+S V + L+ +LE +P   ++I++K + A    +AARRAR+L RRK +L+ ++LP
Sbjct: 360 VRGIVDSLVGEALTQYLEFNPSVIELILEKAIQAFNAAEAARRARELVRRKSILESSTLP 419

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  +
Sbjct: 420 GKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKN 479

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            EI  LITALG GI  + FD   LRYH+I+IMTDADVDGAHIRTLLLTFF+R   SL+  
Sbjct: 480 TEIQALITALGLGIKGEEFDEKSLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKSLLEG 539

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590
           G++YI  PPLY + RGK+  Y  DE  L   L                 G +    L + 
Sbjct: 540 GYIYIACPPLYKVERGKNHTYCYDENDLSTTLKRFREKSNYSIQRFKGLGEMMPKQLWST 599

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
                 +D   +       +  +E   I  +   +             +  LN     
Sbjct: 600 -----TMDPQSRMMKRVEIEDALEADRIFTILMGDKV-APRREFIETHSADLNLAELD 651



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 16/161 (9%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLIC 709
              +   +   RI   +     ++G+ I +    +   +   + E          L  + 
Sbjct: 496 EEFDEKSLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQKSLLEGGYIYIACPPLYKVE 553

Query: 710 NGDKIKI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
            G             + L       +   S+QR+KGLGEM   QLW TT++P +R + RV
Sbjct: 554 RGKNHTYCYDENDLSTTLKRFRE--KSNYSIQRFKGLGEMMPKQLWSTTMDPQSRMMKRV 611

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803
           +I DA +AD +F+ LMGD+V PRREFI+ +S     + LDI
Sbjct: 612 EIEDALEADRIFTILMGDKVAPRREFIETHSADLNLAELDI 652


>gi|321401256|gb|ADW83039.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 641

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 293/649 (45%), Positives = 422/649 (65%), Gaps = 15/649 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     +SY A  I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+
Sbjct: 1   MSQK--ETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +++  +    V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGL
Sbjct: 58  CTEIRISILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V F P + 
Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIVRFKPDAT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYL 236
           IF+  DF +D L  R REL+FLN  + + + D+R              + GGI +FV ++
Sbjct: 177 IFTTVDFQFDILSARFRELAFLNKGLVLIIEDRRRGSEGESLLRNEFQFSGGIVSFVEHI 236

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G R+AL
Sbjct: 237 NENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAAL 295

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ +
Sbjct: 296 TRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGI 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   LPGKLA
Sbjct: 356 MQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLA 415

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LSS+EI 
Sbjct: 416 DCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIR 475

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L++ALGTGIG+D F+INK+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M  +I  G+LY
Sbjct: 476 VLVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           + +PPLY I  GK+  Y   ++  E+ L N    + +       G ++   L        
Sbjct: 536 VAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWET----- 590

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +D   +         F+E      +   +  Q     +    A   N 
Sbjct: 591 TMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANL 639



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 17/240 (7%)

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           K V+    L   + D  + D    + Y     +    A      N ++   +   + +  
Sbjct: 402 KTVLEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 461

Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
             RL+ I    E     S     I   +  + +I R  +   + +     S        F
Sbjct: 462 KARLDKILSSEEIRVLVSALGTGIGEDEFNINKI-RYHKIMIMTDADIDGSHIRTLLLTF 520

Query: 694 SNR-----IEENYL----TILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLG 743
             R     IE+ YL      L LI +G             + + ++G + + +QRYKGLG
Sbjct: 521 FFRYMRPVIEKGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLG 580

Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802
           EMN  QLWETT++P  R +L+VK+ D  +A++ F+ LMGDEV+PR++FI+ N +  + LD
Sbjct: 581 EMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANLD 640


>gi|24212705|ref|NP_710186.1| DNA gyrase subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45655919|ref|YP_000005.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24193336|gb|AAN47204.1|AE011192_5 DNA gyrase subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599152|gb|AAS68642.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|321401260|gb|ADW83041.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401264|gb|ADW83043.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401268|gb|ADW83045.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401272|gb|ADW83047.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401278|gb|ADW83050.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 639

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 292/647 (45%), Positives = 423/647 (65%), Gaps = 13/647 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   + +SY A  I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+
Sbjct: 1   MSQ--EETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +++  D    V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGL
Sbjct: 58  CTEIKISILPDNIVEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L++ + ++G +Y   +  G+  + + + G +  + GT V F P + 
Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSS-ERGTIVRFKPDAT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEAFVSYLDR 238
           IF+  DF +D L  R REL+FLN  + + + D R  +         + GGI +FV +++ 
Sbjct: 177 IFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G R+ALTR
Sbjct: 237 NKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTR 295

Query: 299 QITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
            +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ +++
Sbjct: 296 TLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQ 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           +  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   LPGKLADC
Sbjct: 356 TLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADC 415

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LSS+EI  L
Sbjct: 416 SEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVL 475

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ++ALGTGIG+D F+I+K+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M  +I  G+LY+ 
Sbjct: 476 VSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVA 535

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY I  GK+  YV  ++  E+ L N    + +       G ++   L         +
Sbjct: 536 QPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGEMNPEQLWET-----TM 590

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           D   +         F+E      V   +  Q     +    A   N 
Sbjct: 591 DPSNRVVLKVKLDDFVEAEETFNVLMGDEVQPRKQFIEVNAAKVANL 637



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 15/239 (6%)

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           K V+    L   + D  + D    + Y     +    A      N ++   +   + +  
Sbjct: 400 KTVLEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 459

Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARG---VQEQFVLEGSSI------FS 684
             RL+ I    E     S     I   +  + +I      +     ++GS I      F 
Sbjct: 460 KARLDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFF 519

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           F      I    +      +  +    +   +       + + +IG + + +QRYKGLGE
Sbjct: 520 FRYMRPVIERGYLYVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGE 579

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802
           MN  QLWETT++P  R +L+VK+ D  +A++ F+ LMGDEV+PR++FI+ N +  + LD
Sbjct: 580 MNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNVLMGDEVQPRKQFIEVNAAKVANLD 638


>gi|321401252|gb|ADW83037.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 641

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 293/649 (45%), Positives = 422/649 (65%), Gaps = 15/649 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     +SY A  I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+
Sbjct: 1   MSQK--ETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +++  +    V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGL
Sbjct: 58  CTEIRISILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V F P + 
Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIVRFKPDAT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYL 236
           IF+  DF +D L  R REL+FLN  + + + D+R              + GGI +FV ++
Sbjct: 177 IFTTVDFQFDILSARFRELAFLNKGLVLIIEDRRRGAEGENLLRNEFQFSGGIVSFVEHI 236

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G R+AL
Sbjct: 237 NENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAAL 295

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ +
Sbjct: 296 TRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGI 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   LPGKLA
Sbjct: 356 MQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLA 415

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LSS+EI 
Sbjct: 416 DCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIR 475

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L++ALGTGIG+D F+INK+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M  +I  G+LY
Sbjct: 476 VLVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           + +PPLY I  GK+  Y   ++  E+ L N    + +       G ++   L        
Sbjct: 536 VAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWET----- 590

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +D   +         F+E      +   +  Q     +    A   N 
Sbjct: 591 TMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANL 639



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 17/240 (7%)

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           K V+    L   + D  + D    + Y     +    A      N ++   +   + +  
Sbjct: 402 KTVLEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 461

Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
             RL+ I    E     S     I   +  + +I R  +   + +     S        F
Sbjct: 462 KARLDKILSSEEIRVLVSALGTGIGEDEFNINKI-RYHKIMIMTDADIDGSHIRTLLLTF 520

Query: 694 SNR-----IEENYL----TILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLG 743
             R     IE+ YL      L LI +G             + + ++G + + +QRYKGLG
Sbjct: 521 FFRYMRPVIEKGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLG 580

Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802
           EMN  QLWETT++P  R +L+VK+ D  +A++ F+ LMGDEV+PR++FI+ N +  + LD
Sbjct: 581 EMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANLD 640


>gi|321401274|gb|ADW83048.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401276|gb|ADW83049.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401280|gb|ADW83051.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 639

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 291/647 (44%), Positives = 423/647 (65%), Gaps = 13/647 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   + +SY A  I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+
Sbjct: 1   MSQ--EETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +++  D    V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGL
Sbjct: 58  CTEIKISILPDNIVEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L++ + ++G +Y   +  G+  + + + G +  + GT V F P + 
Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSS-ERGTIVRFKPDAT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEAFVSYLDR 238
           IF+  DF +D L  R REL+FLN  + + + D R  +         + GGI +FV +++ 
Sbjct: 177 IFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G R+ALTR
Sbjct: 237 NKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTR 295

Query: 299 QITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
            +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ +++
Sbjct: 296 TLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQ 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           +  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   LPGKLADC
Sbjct: 356 TLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADC 415

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LSS+EI  L
Sbjct: 416 SEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVL 475

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ++ALGTGIG+D F+I+K+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M  +I  G+LY+ 
Sbjct: 476 VSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVA 535

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY I  GK+  YV  ++  E+ L N    + +       G ++   L         +
Sbjct: 536 QPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGEMNPEQLWET-----TM 590

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           D   +         F+E      +   +  Q     +    A   N 
Sbjct: 591 DPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEVNAAKVANL 637



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 15/239 (6%)

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           K V+    L   + D  + D    + Y     +    A      N ++   +   + +  
Sbjct: 400 KTVLEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 459

Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARG---VQEQFVLEGSSI------FS 684
             RL+ I    E     S     I   +  + +I      +     ++GS I      F 
Sbjct: 460 KARLDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFF 519

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           F      I    +      +  +    +   +       + + +IG + + +QRYKGLGE
Sbjct: 520 FRYMRPVIERGYLYVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGE 579

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802
           MN  QLWETT++P  R +L+VK+ D  +A++ F+ LMGDEV+PR++FI+ N +  + LD
Sbjct: 580 MNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEVNAAKVANLD 638


>gi|24753767|gb|AAN64015.1|AF434658_12 DNA gyrase subunit B [Leptospira interrogans]
 gi|321401258|gb|ADW83040.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401262|gb|ADW83042.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401266|gb|ADW83044.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401270|gb|ADW83046.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 639

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 292/647 (45%), Positives = 423/647 (65%), Gaps = 13/647 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   + +SY A  I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+
Sbjct: 1   MSQ--EETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +++  D    V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGL
Sbjct: 58  CTEIKISILPDNIVEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L++ + ++G +Y   +  GI  + + + G +  + GT V F P + 
Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKVYTQKYERGIPVSSVQIQGDSS-ERGTIVRFKPDAT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEAFVSYLDR 238
           IF+  DF +D L  R REL+FLN  + + + D R  +         + GGI +FV +++ 
Sbjct: 177 IFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G R+ALTR
Sbjct: 237 NKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTR 295

Query: 299 QITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
            +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ +++
Sbjct: 296 TLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQ 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           +  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   LPGKLADC
Sbjct: 356 TLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADC 415

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LSS+EI  L
Sbjct: 416 SEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVL 475

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ++ALGTGIG+D F+I+K+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M  +I  G+LY+ 
Sbjct: 476 VSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVA 535

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY I  GK+  YV  ++  E+ L N    + +       G ++   L         +
Sbjct: 536 QPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGEMNPEQLWET-----TM 590

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           D   +         F+E      +   +  Q     +    A   N 
Sbjct: 591 DPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEVNAAKVANL 637



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 15/239 (6%)

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           K V+    L   + D  + D    + Y     +    A      N ++   +   + +  
Sbjct: 400 KTVLEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 459

Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARG---VQEQFVLEGSSI------FS 684
             RL+ I    E     S     I   +  + +I      +     ++GS I      F 
Sbjct: 460 KARLDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFF 519

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           F      I    +      +  +    +   +       + + +IG + + +QRYKGLGE
Sbjct: 520 FRYMRPVIERGYLYVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGE 579

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802
           MN  QLWETT++P  R +L+VK+ D  +A++ F+ LMGDEV+PR++FI+ N +  + LD
Sbjct: 580 MNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEVNAAKVANLD 638


>gi|89101114|ref|ZP_01173950.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
 gi|89084169|gb|EAR63334.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
          Length = 640

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 292/592 (49%), Positives = 412/592 (69%), Gaps = 7/592 (1%)

Query: 1   MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M +  IQ  SYD + IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L G
Sbjct: 1   MEEKAIQEQSYDENQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I V +  D S TV D+GRGIP  +H++ G  A EVIMT LHAGGKF    YKVSGG
Sbjct: 60  YCSEINVIIEKDNSITVVDDGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS+ L++ ++R+G ++   F  G+    L V G A  +TGT + F P  
Sbjct: 120 LHGVGASVVNALSTELEVFVRRDGKLHYQKFERGVPAADLKVIGEAE-ETGTTIHFKPDG 178

Query: 180 DIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+   ++ Y+ L +R+REL+FLN  ++I++ DKR+   +     Y+GGI+++V +L+R
Sbjct: 179 EIFTETLEYEYEILANRIRELAFLNRGLKITIEDKRAENKKSEYF-YEGGIKSYVEHLNR 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L + PI I+G ++ I++++A+++NDG+  N+  + NNI   +GGTH SG ++ALTR
Sbjct: 238 TKEVLHEEPIYIEGEKEGITVEVAIQYNDGFTGNIYSYANNIHTYEGGTHESGFKTALTR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SEVR+V ++
Sbjct: 298 VINDYARKNGIFKDSDANLSGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEVRTVTDT 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
           F +D    +L E+P  A+ +V+K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS
Sbjct: 358 FFSDHFEKFLMENPQVARKVVEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCS 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +I
Sbjct: 418 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG D F+I+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +
Sbjct: 478 TAAGTGIG-DDFEISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY + +GK ++Y  +++ L+        + +         G ++   L  
Sbjct: 537 PPLYKVQQGKRVEYAYNDKQLDQIFEELPKAPKPNIQRYKGLGEMNPEQLWE 588



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 6/200 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +          +  S      +V  
Sbjct: 444 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRAIITAAGTGIGDDFEISKARYHKIVIM 501

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I +  I       L  +  G +++       LD I
Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMRQIIEAGYIY-IAQPPLYKVQQGKRVEYAYNDKQLDQI 560

Query: 727 FSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
           F    K    ++QRYKGLGEMN  QLWETT++P TR+LL+V + DA +AD+ F  LMGD+
Sbjct: 561 FEELPKAPKPNIQRYKGLGEMNPEQLWETTMDPGTRTLLQVSLEDAIEADETFEILMGDK 620

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR+FI++N++    LDI
Sbjct: 621 VEPRRQFIEDNAVYVKNLDI 640


>gi|312888910|ref|ZP_07748472.1| DNA gyrase subunit B [Mucilaginibacter paludis DSM 18603]
 gi|311298651|gb|EFQ75758.1| DNA gyrase subunit B [Mucilaginibacter paludis DSM 18603]
          Length = 652

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 284/627 (45%), Positives = 400/627 (63%), Gaps = 17/627 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  S+Y AD+IQ+L+GL+AV+KRPSMYIGDT G  GLHH++YEV+DN+IDE+L G
Sbjct: 1   MSEEKEDKSNYSADNIQVLEGLEAVRKRPSMYIGDT-GVKGLHHLVYEVVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V ++   S TV DNGRGIPT ++ +E  SA E++MT LHAGGKF++ +YKVSGG
Sbjct: 60  HCDDIKVFIHKGNSITVIDNGRGIPTGINTKEQKSALEIVMTVLHAGGKFDKDTYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +K  + REG I+   +  G     +   G   + TGT  TF P  
Sbjct: 120 LHGVGVSCVNALSTHMKTLVYREGKIFTQEYEKGKPIFEVKEIG-VSDHTGTTQTFQPDP 178

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVS 234
           +IF+   ++ ++TL  RLREL+FLN  +++SL D+R  +          + +GG+  FV 
Sbjct: 179 EIFTLTTEYKFETLASRLRELAFLNKGIRLSLTDEREVKEDGTFVCDEFYSEGGLREFVK 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLD  +  ++  PI + G ++ + ++LA ++ND Y ENV  + NNI   +GGTH+SG R 
Sbjct: 239 YLDGTRVSIIPEPIYLDGIKNGVPVELAFQYNDTYSENVHSYVNNINTIEGGTHVSGFRR 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR + +Y +K    K +K  + GDD REG T+++S+K+ +P+F  QTK KL ++EV  
Sbjct: 299 GLTRTLKAYADKEGLLKNNKIEITGDDFREGLTAIISVKVQEPQFEGQTKSKLGNNEVIG 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V + L  +LEE+P EAK+IV KVL A+  R AAR+AR++ +RK V+  + LPGKL
Sbjct: 359 AVDQAVGEILGNFLEENPKEAKLIVGKVLIAAQARAAARKAREMVQRKNVMGGSGLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+  DP   EL+LVEGDSAGG+AK GR+R+ QAILPLRGKILNVE+A   K+  ++EI
Sbjct: 419 ADCANSDPAVCELYLVEGDSAGGTAKMGRNRDYQAILPLRGKILNVEKAMEHKIYENEEI 478

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             + TALG  IG    +     +KLRYHKI+IMTDADVDG+HI TL+LTFFFR M  L+ 
Sbjct: 479 KNMFTALGVSIGTAEDNKALNLDKLRYHKIVIMTDADVDGSHITTLILTFFFRYMKELVE 538

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI  PPLY + +GK  +Y   E+  E  +       + E     +           
Sbjct: 539 YGYVYIASPPLYLVKKGKEQEYCWTEDQREAAIQRLKGGGKEESVHTQRYKGLGE----- 593

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAV 617
           ++     D  +        +  I+ A 
Sbjct: 594 MNAIQLWDTTMNPETRTLRRATIDNAA 620



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 5/109 (4%)

Query: 700 NYLTILSLICNGDKIK---ITGPCSLLDTIFSIGRKGISM--QRYKGLGEMNASQLWETT 754
                L L+  G + +                 G K  S+  QRYKGLGEMNA QLW+TT
Sbjct: 544 IASPPLYLVKKGKEQEYCWTEDQREAAIQRLKGGGKEESVHTQRYKGLGEMNAIQLWDTT 603

Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +NP+TR+L R  I +A++ D  FS LMGDEV PRREFI++N+  + +DI
Sbjct: 604 MNPETRTLRRATIDNAAECDHTFSMLMGDEVAPRREFIEKNAKYARIDI 652


>gi|72383051|ref|YP_292406.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL2A]
 gi|72002901|gb|AAZ58703.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL2A]
          Length = 655

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 293/638 (45%), Positives = 401/638 (62%), Gaps = 19/638 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS + +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNA+DE+L G
Sbjct: 1   MSKDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GSKGLHHLVYEVVDNAVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D IT+ L  DGS +VSDNGRGIPTDLH   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDQITILLCEDGSASVSDNGRGIPTDLHPRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTFL 176
           LHGVG+SVVNALS W+++ ++R+  ++   F  G     L       S  N TGT V F 
Sbjct: 120 LHGVGISVVNALSEWVEVTVRRQQQVHFQRFERGASIGSLKSENLSKSDKNLTGTTVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGI 229
           P   IF+    F Y  L  RLREL++LN  V+I   D+R      S  P E   FY+GGI
Sbjct: 180 PDDQIFTDGISFEYGILSSRLRELAYLNGGVRIVFRDERKQSNDSSQTPYEEVYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V Y+ + K  L    I +   +D + ++ AM+W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVEYMTKAKDSLHPEIIYVNSEKDGVQVEAAMQWCVDAYSDSILGFANNIRTIDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + S+ +K    K    ++ G++ REG T+VLS+K+PDP F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNSFAKKRGKRKDGDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S V   LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDSLVGTALSQYLEFNPGVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILN+E+    KM
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKM 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI +LITALG GI  + F++  LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQSLITALGLGIKGEDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY +TRGK+ +Y  +E  ++  L +               G +    L
Sbjct: 540 VEGGYIYIACPPLYKVTRGKNHKYCYNESDMQKTLASFGEKANYTIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
                    +D   +       +  +E   I  +   +
Sbjct: 600 WET-----TMDPTTRMMKRVEIEDALEADRIFTILMGD 632



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 10/153 (6%)

Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNG 711
            + ++   R  R V      ++G+ I +    +   +   + E          L  +  G
Sbjct: 499 EDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDLVEGGYIYIACPPLYKVTRG 558

Query: 712 DKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
              K       +  T+ S G K   ++QR+KGLGEM   QLWETT++P TR + RV+I D
Sbjct: 559 KNHKYCYNESDMQKTLASFGEKANYTIQRFKGLGEMMPKQLWETTMDPTTRMMKRVEIED 618

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           A +AD +F+ LMGD+V PRREFI+ +     LD
Sbjct: 619 ALEADRIFTILMGDKVAPRREFIETH--SVDLD 649


>gi|257051220|ref|YP_003129053.1| DNA gyrase, B subunit [Halorhabdus utahensis DSM 12940]
 gi|256689983|gb|ACV10320.1| DNA gyrase, B subunit [Halorhabdus utahensis DSM 12940]
          Length = 637

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 281/592 (47%), Positives = 395/592 (66%), Gaps = 10/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD+   ++Y A  IQ+L+GL AV+KRP+MYIG TD   GLHH++YEV+DNAIDE+L G+
Sbjct: 1   MSDD---NAYGAGQIQVLEGLQAVQKRPAMYIGSTD-TRGLHHLVYEVVDNAIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ DGS +V+D+GRGIP D+H+E    A EVIMT LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDHIEVTIHDDGSVSVTDDGRGIPIDIHEEYDRPAVEVIMTVLHAGGKFDNKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPS 178
           HGVGVSVVNALS  L++ + REGN+++ +F +G   + L         ++TGT + F P 
Sbjct: 117 HGVGVSVVNALSQKLEVEVSREGNVWKQTFDHGAPADDLTEIRSLDDPDETGTTIRFWPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +IF   DF + TL +RLREL+FLNS V+I+L      E R  T  Y+GGI  FV YL+ 
Sbjct: 177 EEIFETTDFQFSTLANRLRELAFLNSGVEITL--ADDREERAETFQYEGGIREFVEYLNE 234

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL    +  +    +I +++A++       ++  F NNI  ++GG+HL+G ++ALTR
Sbjct: 235 TKDPLHDEVVYFEDEDQDIQVEVALQATTELQGSIHAFANNINTREGGSHLTGFKTALTR 294

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y   +      + ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR VVES
Sbjct: 295 VVNDYATTNDLLSDIEETLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGVVES 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +++ L  + EE+P  A+ IV+K ++A+  R AA++A +LTRRK  L+  +LPGKLADC 
Sbjct: 355 AMHENLGTYFEENPAVAQAIVRKAVEAAKARKAAQKAEELTRRKSALESTALPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP ++ELF+ EGDSAGGSAKQ R+ + QA+LP+RGKILNVE+ R D++L +++I  +I
Sbjct: 415 TKDPSRAELFIAEGDSAGGSAKQARNPDFQAVLPIRGKILNVEKHRLDRILENEQIRNII 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTG+G D FD+++LRY KII  TDADVDGAHIRTLLLTFF+R M  L+  G +Y  +
Sbjct: 475 TALGTGVG-DEFDLDELRYEKIIFATDADVDGAHIRTLLLTFFYRHMRPLLEGGHVYAAR 533

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRN 589
           PPLY I           +   ++ +  +   +          G ++   L +
Sbjct: 534 PPLYRIRYRGETYDAMTDAERDEIIEEKCNGNPTQIQRFKGLGEMNPQQLWD 585



 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++ N +  +       +       + ++      V    +    
Sbjct: 453 ILNVEKHRLDRILENEQIRNIITALGTGVGDEFDLDELRYEKIIFATDADVDGAHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738
             F +      +    +      +  +   G+           D I      G    +QR
Sbjct: 513 LTFFYRHMRPLLEGGHVYAARPPLYRIRYRGETYDAMTDAER-DEIIEEKCNGNPTQIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +KGLGEMN  QLW+TT+NP+ R L R+ I DA+ AD +FS LMGD VEPR++FI+E+S  
Sbjct: 572 FKGLGEMNPQQLWDTTMNPENRFLKRITIDDAAAADKMFSVLMGDAVEPRKQFIKEHSPE 631

Query: 799 SA-LDI 803
           +  +DI
Sbjct: 632 AEWVDI 637


>gi|116326860|ref|YP_796580.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116119604|gb|ABJ77647.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 641

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 293/649 (45%), Positives = 422/649 (65%), Gaps = 15/649 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     +SY A  I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+
Sbjct: 1   MSQK--ETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +++  +    V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGL
Sbjct: 58  CTEIRISILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V F P + 
Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIVRFKPDAT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYL 236
           IF+  DF +D L  R REL+FLN  + + + D+R              + GGI +FV ++
Sbjct: 177 IFTTVDFQFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNEFQFSGGIVSFVEHI 236

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G R+AL
Sbjct: 237 NENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAAL 295

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ +
Sbjct: 296 TRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGI 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   LPGKLA
Sbjct: 356 MQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLA 415

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LSS+EI 
Sbjct: 416 DCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIR 475

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L++ALGTGIG+D F+INK+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M  +I  G+LY
Sbjct: 476 ILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           + +PPLY I  GK+  Y   ++  E+ L N    + +       G ++   L        
Sbjct: 536 VAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWET----- 590

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +D   +         F+E      +   +  Q     +    A   N 
Sbjct: 591 TMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANL 639



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 15/239 (6%)

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           K V+    L   + D  + D    + Y     +    A      N ++   +   + +  
Sbjct: 402 KTVLEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 461

Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARG---VQEQFVLEGSSI------FS 684
             RL+ I    E     S     I   +  + +I      +     ++GS I      F 
Sbjct: 462 KARLDKILSSEEIRILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFF 521

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           F      I    +      +  +    +           + + ++G + + +QRYKGLGE
Sbjct: 522 FRYMRPVIERGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGE 581

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802
           MN  QLWETT++P  R +L+VK+ D  +A++ F+ LMGDEV+PR++FI+ N +  + LD
Sbjct: 582 MNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANLD 640


>gi|51891144|ref|YP_073835.1| DNA gyrase B subunit [Symbiobacterium thermophilum IAM 14863]
 gi|51854833|dbj|BAD38991.1| DNA gyrase B subunit [Symbiobacterium thermophilum IAM 14863]
          Length = 638

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 305/642 (47%), Positives = 413/642 (64%), Gaps = 13/642 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y  + IQ+L+GL+AV++RP MYIG T  + GLHH+I+E++DNA+DE L G+ D I V
Sbjct: 6   TEQYTGEQIQVLEGLEAVRRRPGMYIGGTS-QRGLHHLIWEIIDNAVDERLAGFCDKIVV 64

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+ DGS +VSDNGRGIP D+H + GIS  E + T LHAGGKF   +YKVSGGLHGVG +
Sbjct: 65  TLHSDGSVSVSDNGRGIPVDIHPKTGISTVETVYTMLHAGGKFGGGAYKVSGGLHGVGAA 124

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  L +++K+ G +YE+ F N G    PL   G    + GT V F P  +IF   
Sbjct: 125 VVNALSRKLYIQVKQNGGVYEVEFANGGKTLYPLRRVGDTK-EHGTYVRFWPDPEIFESV 183

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+ + +  RLR+ +FLN  + I  ID+++    E    Y  G++ FV YL+R ++PL  
Sbjct: 184 EFDSEAIVTRLRDTAFLNQGLFIQFIDEKAG--AEYRFKYNEGLQTFVQYLNRSREPLHA 241

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI +  + D   ++LA+++ D Y EN+L F NNI   +GGTH +GL++ALTR I SY  
Sbjct: 242 KPIYVFKATDTQEMELAIQYTDAYSENILSFANNIRTVEGGTHETGLKTALTRVINSYAR 301

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    K ++ ++ G+D REG T++LS+K+ +P+F  QTK KL SSE+ + V + V++GLS
Sbjct: 302 KYKLLKDNEDNLSGEDIREGMTAILSVKLQEPQFEGQTKTKLGSSEMETFVAAAVSEGLS 361

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P  AK IV+K L A+  R+AAR+AR+L RRK  L+I +LPGKL DC+ RDP +S
Sbjct: 362 DFLEENPAIAKRIVEKALSAARAREAARKARELVRRKSALEITALPGKLTDCTSRDPSES 421

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAK GR R  QA+LPLRGKILNVE+AR DK+LS++EI TLITA+G GI
Sbjct: 422 ELFLVEGDSAGGSAKMGRDRRIQAVLPLRGKILNVEKARLDKILSNEEIRTLITAVGAGI 481

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI+K RYHK+IIMTDADVDG+HIRTLLLTFFFR M  LI  G+LYI  PPLY I 
Sbjct: 482 G-DDFDISKCRYHKVIIMTDADVDGSHIRTLLLTFFFRFMRPLIEAGYLYIASPPLYMIR 540

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK + Y   E+  +  +       +        G ++   L         +D   +  Y
Sbjct: 541 KGKQVYYAYSEQEKDQVIARIGGVTDKPQRYKGLGEMNPEQLWET-----TMDPSKRILY 595

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLA--SKLANRLNFI 645
               +   E   +      E  +     +   + L   L+ I
Sbjct: 596 KVTMEDAAEATALFETLMGEKVEPRREFIQRNAHLVQNLDTI 637



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT++P  R L +V + DA++A  LF  LMG++VEPRREFIQ N+
Sbjct: 569 QRYKGLGEMNPEQLWETTMDPSKRILYKVTMEDAAEATALFETLMGEKVEPRREFIQRNA 628

Query: 797 -LPSALD 802
            L   LD
Sbjct: 629 HLVQNLD 635


>gi|299143458|ref|ZP_07036538.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517943|gb|EFI41682.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 639

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 298/592 (50%), Positives = 401/592 (67%), Gaps = 8/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +N +N  Y A+ IQ+L GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE+L G 
Sbjct: 1   MKEN-KNRQYGAEDIQVLTGLEPVRKRPGMYIGST-GSKGLHHLVYEVVDNSIDEALAGI 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +  D S +VSDNG GIPT++H + G S  E ++T LHAGGKFN  +YKVSGGL
Sbjct: 59  CDHILVEIYEDNSVSVSDNGSGIPTEIHPQTGKSTVETVLTILHAGGKFNNGAYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179
           HGVGVSVVNALS+ L + +KR GNIYE  F  GI    L+        +TGT++ F P  
Sbjct: 119 HGVGVSVVNALSTELIVNVKRNGNIYEQKFSRGIAKTQLIEVEKLKKEETGTKIFFRPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF   +F ++ L  R RE++FLN  ++I  ID R  +    T  Y+GGI++FV Y++R 
Sbjct: 179 EIFDTVEFEFEILSKRFREMAFLNKGIKIQFIDHRIGKD--ETYHYEGGIKSFVEYINRK 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  + +  I I   R+N ++++A+++ D Y EN+L F NNI  ++GG+HLSG RSALTR 
Sbjct: 237 KTAIHKEIIYIDEIRENTAVEIALQYTDSYTENILTFANNINTEEGGSHLSGFRSALTRC 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K    K+ + ++ G+D REG T V+S+K+P+P+F  QTK KL +SE R +V+S 
Sbjct: 297 INDYGRKYNIIKEKEENLSGEDVREGLTGVISVKLPNPQFEGQTKAKLGNSETRGIVDSS 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ LS++LEE+P  AK I++K L A   R+AAR+ARDLTR+K +L+  +LPGKLADC  
Sbjct: 357 VSENLSSFLEENPKVAKTILEKSLSARRAREAARKARDLTRKKNILESMTLPGKLADCQN 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            D + +E+FLVEGDSAGGSAK  R    QAILPLRGKI+NVE+AR DK+L+S EI  +IT
Sbjct: 417 SDNETTEIFLVEGDSAGGSAKDARDSVFQAILPLRGKIMNVEKARLDKILNSDEIKAMIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG + F I+ LRY+KIIIMTDADVDGAHI TLLLTFFFR M  LI  G +Y+ +P
Sbjct: 477 AFGTGIGSE-FSIDNLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIEEGHVYVAQP 535

Query: 540 PLYGITRGKSL-QYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PL+GI +G    +Y  D+  L+  L      ++         G ++  DL  
Sbjct: 536 PLFGILKGTKALRYCYDDRELQRALNELGRDKKFDIKRYKGLGEMNPEDLWE 587



 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 3/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +          +       + ++      V    ++   
Sbjct: 454 IMNVEKARLDKILNSDEIKAMITAFGTGIGSEFSIDNLRYNKIIIMTDADVDGAHIMTLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGR-KGISMQR 738
             F F      I    +      +  ++     ++       L   +  +GR K   ++R
Sbjct: 514 LTFFFRYMRPLIEEGHVYVAQPPLFGILKGTKALRYCYDDRELQRALNELGRDKKFDIKR 573

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN   LWETT+NPD R LL+V+I DA +AD+ FS LMG EVEPRR+FIQEN+L 
Sbjct: 574 YKGLGEMNPEDLWETTMNPDHRILLKVEIKDAIEADETFSMLMGSEVEPRRDFIQENALF 633

Query: 799 S-ALD 802
              +D
Sbjct: 634 VENID 638


>gi|294508443|ref|YP_003572501.1| DNA gyrase subunit B [Salinibacter ruber M8]
 gi|294344771|emb|CBH25549.1| DNA gyrase subunit B [Salinibacter ruber M8]
          Length = 698

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 289/602 (48%), Positives = 400/602 (66%), Gaps = 14/602 (2%)

Query: 1   MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+         S Y A +IQ+L+GL+AV+KRPSMYIGD  G  GLHH++YEVLDN+IDE
Sbjct: 47  MSETTDLPDRAISDYAASNIQVLEGLEAVRKRPSMYIGDV-GLRGLHHLVYEVLDNSIDE 105

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           ++ G+ D I V +  DGS ++ DNGRGIP D H  E  SA EV+MT LHAGGKF++ SY+
Sbjct: 106 AMAGHCDEIGVEIYEDGSVSIEDNGRGIPVDQHPAEDRSALEVVMTVLHAGGKFDKDSYQ 165

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEV 173
           VSGGLHGVGVSVVNAL+S  ++ + R+G+++E +++ G+ ++P+       AG +TGT +
Sbjct: 166 VSGGLHGVGVSVVNALASRFEVTVWRDGSVWEQNYLCGVPEDPVRRVRPMEAGEETGTRI 225

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL--IDKRSPEPREITMFYKGGIEA 231
            F P  DIF   +F ++TL  RLREL+FLN+ V+I +    +        T   + GI  
Sbjct: 226 RFWPDGDIFKTTEFRFETLSDRLRELAFLNAGVRIRVEDHREEDEGLARETYHSEEGIIG 285

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YLD  +  ++   I I  +   + ++LAM++ND Y++NVL F NNI   +GGTH++G
Sbjct: 286 FVDYLDEARDSILDETIYIAETDGEVPVELAMQYNDEYNKNVLSFVNNINTHEGGTHVTG 345

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR +  Y +K+      K  + GDD REG T+VLS+K+ +P+F  QTK KL +S+
Sbjct: 346 FRRALTRTLKRYAQKNDMLSDLKFDLSGDDFREGLTAVLSVKVSEPQFEGQTKTKLGNSD 405

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VES +N  L  WLE+HP +A+ I++KV+ A+  R AAR+AR+L +RK      SLP
Sbjct: 406 VQGIVESLINTELGRWLEDHPDQAERIIEKVIQAAEARAAARKARELVQRKDAFSGGSLP 465

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS RDP++ EL+LVEGDSAGGSAKQ R R  QAILPLRGKILNVE+AR D++L  
Sbjct: 466 GKLADCSSRDPEEGELYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARLDRILEH 525

Query: 472 QEIGTLITALGTGI--GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            +I  ++TALGTG+   ++ F++N++RYHKI++MTDADVDGAHIR+LLLTFF+RQ+  LI
Sbjct: 526 DQIQNIVTALGTGLTSTEEEFNMNEMRYHKIVMMTDADVDGAHIRSLLLTFFYRQLRPLI 585

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDL 587
             G +YI  PPLY I  G    Y   +E ++  +                  G ++   L
Sbjct: 586 EKGNIYIALPPLYRIQNGSQEIYCWSDEEMQTRMAELRADGNSPSMQRYKGLGEMNPEQL 645

Query: 588 RN 589
             
Sbjct: 646 WT 647



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 4/204 (1%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +    +       +  I  V     D+ +       +   L      +E+ ++ +     
Sbjct: 495 QARDRHFQAILPLRGKILNVEKARLDRILEHDQIQNIVTALGTGLTSTEEEFNMNEMRYH 554

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
            +V      V    +      F +      I    I      +  +     +I       
Sbjct: 555 KIVMMTDADVDGAHIRSLLLTFFYRQLRPLIEKGNIYIALPPLYRIQNGSQEIYCWSDEE 614

Query: 722 L---LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           +   +  + + G    SMQRYKGLGEMN  QLW TT+NP+TR + +V I DA+ AD LFS
Sbjct: 615 MQTRMAELRADG-NSPSMQRYKGLGEMNPEQLWTTTMNPETRKIQQVTIQDAAAADRLFS 673

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
            LMGD VEPRREFI+ N+  + +D
Sbjct: 674 TLMGDSVEPRREFIERNAKYATID 697


>gi|78043837|ref|YP_361487.1| DNA gyrase subunit B [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995952|gb|ABB14851.1| DNA gyrase, B subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 635

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 304/589 (51%), Positives = 414/589 (70%), Gaps = 6/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M        Y A+ IQ+LKGL+ V+KRP+MYIG T+ E GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MELEKNGIKYGAEEIQVLKGLEGVRKRPAMYIGSTN-EKGLHHLVYEVVDNSIDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ DGS TV+DNGRGIP D+H E G  A EV++T LHAGGKF    YKVSGGL
Sbjct: 60  CNRIEVIIHKDGSITVADNGRGIPVDIHPEVGKPAVEVVLTMLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL++RIKR+GN+Y   F  G     L + G +   TGT +TF P ++
Sbjct: 120 HGVGVSVVNALSEWLEVRIKRDGNLYYQKFSRGEPITELKIIGKSK-STGTIITFKPDAE 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +FNYDTL  RL ELS+LN +V+I L D+R  +       + GGI+ ++ YL+++K
Sbjct: 179 IFETVEFNYDTLAKRLLELSYLNKNVKIILKDERINKE--EIFEHSGGIKDYLKYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL    I  +  +D + +++A+++ + + EN+L FTNNI   +GGTH  G ++ALTR I
Sbjct: 237 EPLH-KIIYFEKEKDEVVVEVALQYCNSFSENILSFTNNINTTEGGTHEIGFKTALTRVI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K    K++  S+ G+D REG T+++S+K+PDP+F  QTK KLV++EVRS+V+S V
Sbjct: 296 NDYAKKYNLIKENNLSLQGEDIREGLTAIISVKVPDPQFEGQTKTKLVNTEVRSIVDSIV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +D LS +LEE+P   K +++  + A+  R+AAR+AR+L RRK  L+  +LPGKLADCSE+
Sbjct: 356 SDYLSTYLEENPAVGKKLIENAIRAARAREAARKARELARRKTALESNTLPGKLADCSEK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   EL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L+++EI  +ITA
Sbjct: 416 DPSLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILANEEIRAMITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTG+ +D FDI K RYH++IIMTDADVDGAHIRTLLLTFF+R +  LI NG++YI +PP
Sbjct: 476 LGTGVDKD-FDIEKARYHRLIIMTDADVDGAHIRTLLLTFFYRYLRPLIENGYVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY + +GK  +Y+  ++ LE YL                G +    L  
Sbjct: 535 LYKVKKGKLEKYLYSDDELERYLNEIGREGVTIQRYKGLGEMDPEQLWE 583



 Score =  190 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 5/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +    +K +         L+      V    +   +
Sbjct: 452 ILNVEKSRLDKILANEEIRAMITALGTGVDKDFDIEKARYHRLIIMTDADVDGAHI--RT 509

Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGD-KIKITGPCSLLDTIFSIGRKGISMQR 738
            + +F  +Y R +  N         L  +  G  +  +     L   +  IGR+G+++QR
Sbjct: 510 LLLTFFYRYLRPLIENGYVYIAQPPLYKVKKGKLEKYLYSDDELERYLNEIGREGVTIQR 569

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT+NP+TR++L+V + DA++AD++F+ LMGD+VEPRREFI++N+  
Sbjct: 570 YKGLGEMDPEQLWETTMNPETRTILKVTLEDAAKADEIFTILMGDKVEPRREFIEKNAKL 629

Query: 799 S-ALDI 803
              LDI
Sbjct: 630 VRNLDI 635


>gi|83816748|ref|YP_446507.1| DNA gyrase, B subunit [Salinibacter ruber DSM 13855]
 gi|83758142|gb|ABC46255.1| DNA gyrase, B subunit [Salinibacter ruber DSM 13855]
          Length = 652

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 291/602 (48%), Positives = 402/602 (66%), Gaps = 14/602 (2%)

Query: 1   MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+         S Y A +IQ+L+GL+AV+KRPSMYIGD  G  GLHH++YEVLDN+IDE
Sbjct: 1   MSETTDLPDRAISDYAASNIQVLEGLEAVRKRPSMYIGDV-GLRGLHHLVYEVLDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           ++ G+ D I V +  DGS ++ DNGRGIP D H  E  SA EV+MT LHAGGKF++ SY+
Sbjct: 60  AMAGHCDEIGVEIYEDGSVSIEDNGRGIPVDQHPAEDRSALEVVMTVLHAGGKFDKDSYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEV 173
           VSGGLHGVGVSVVNAL+S  ++ + R+G+++E +++ G+ ++P+       AG +TGT +
Sbjct: 120 VSGGLHGVGVSVVNALASRFEVTVWRDGSVWEQNYLCGVPEDPVRRVRPMEAGEETGTRI 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP--REITMFYKGGIEA 231
            F P  DIF   +F ++TL  RLREL+FLN+ V+I + D R  +      T   + GI  
Sbjct: 180 RFWPDGDIFKTTEFRFETLSDRLRELAFLNAGVRIRVEDHREEDKGLARETYHSEEGIIG 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YLD  +  ++   I I  +   + ++LAM++ND Y++NVL F NNI   +GGTH++G
Sbjct: 240 FVDYLDEARDSILDETIYIAETDGEVPVELAMQYNDEYNKNVLSFVNNINTHEGGTHVTG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR +  Y +K+      K  + GDD REG T+VLS+K+ +P+F  QTK KL +S+
Sbjct: 300 FRRALTRTLKRYAQKNDMLSDLKFDLSGDDFREGLTAVLSVKVSEPQFEGQTKTKLGNSD 359

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VES +N  L  WLE+HP +A+ I++KV+ A+  R AAR+AR+L +RK      SLP
Sbjct: 360 VQGIVESLINTELGRWLEDHPDQAERIIEKVIQAAEARAAARKARELVQRKDAFSGGSLP 419

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS RDP++ EL+LVEGDSAGGSAKQ R R  QAILPLRGKILNVE+AR D++L  
Sbjct: 420 GKLADCSSRDPEEGELYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARLDRILEH 479

Query: 472 QEIGTLITALGTGI--GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            +I  ++TALGTG+   ++ F++N++RYHKI++MTDADVDGAHIR+LLLTFF+RQ+  LI
Sbjct: 480 DQIQNIVTALGTGLTSTEEEFNMNEMRYHKIVMMTDADVDGAHIRSLLLTFFYRQLRPLI 539

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDL 587
             G +YI  PPLY I  G    Y   +E ++  +                  G ++   L
Sbjct: 540 EKGNIYIALPPLYRIQNGSQEIYCWSDEEMQTRMAELRADGNSPSMQRYKGLGEMNPEQL 599

Query: 588 RN 589
             
Sbjct: 600 WT 601



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 4/204 (1%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +    +       +  I  V     D+ +       +   L      +E+ ++ +     
Sbjct: 449 QARDRHFQAILPLRGKILNVEKARLDRILEHDQIQNIVTALGTGLTSTEEEFNMNEMRYH 508

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
            +V      V    +      F +      I    I      +  +     +I       
Sbjct: 509 KIVMMTDADVDGAHIRSLLLTFFYRQLRPLIEKGNIYIALPPLYRIQNGSQEIYCWSDEE 568

Query: 722 L---LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           +   +  + + G    SMQRYKGLGEMN  QLW TT+NP+TR + +V I DA+ AD LFS
Sbjct: 569 MQTRMAELRADG-NSPSMQRYKGLGEMNPEQLWTTTMNPETRKIQQVTIQDAAAADRLFS 627

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
            LMGD VEPRREFI+ N+  + +D
Sbjct: 628 TLMGDSVEPRREFIERNAKYATID 651


>gi|124026793|ref|YP_001015908.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL1A]
 gi|123961861|gb|ABM76644.1| DNA gyrase, subunit B [Prochlorococcus marinus str. NATL1A]
          Length = 655

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 293/638 (45%), Positives = 401/638 (62%), Gaps = 19/638 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS + +   +Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNA+DE+L G
Sbjct: 1   MSKDSKVQEAYGAEQIQVLEGLEPVRKRPGMYIGST-GSKGLHHLVYEVVDNAVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D IT+ L  DGS +VSDNGRGIPTDLH   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCDQITILLCEDGSASVSDNGRGIPTDLHPRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTFL 176
           LHGVG+SVVNALS W+++ ++R+  ++   F  G     L       S  N TGT V F 
Sbjct: 120 LHGVGISVVNALSEWVEVTVRRQQQVHFQRFERGASIGSLKSENLSKSDKNLTGTTVCFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGI 229
           P   IF+    F Y  L  RLREL++LN  V+I   D+R      S  P E   FY+GGI
Sbjct: 180 PDDQIFTDGISFEYGILSSRLRELAYLNGGVRIVFRDERKQSNDSSQTPHEEVYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V Y+ + K  L    I +   +D + ++ AM+W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVEYMTKAKDSLHPEIIYVNSEKDGVQVEAAMQWCVDAYSDSILGFANNIRTIDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + S+ +K    K    ++ G++ REG T+VLS+K+PDP F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNSFAKKRGKRKDGDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S V   LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDSLVGTSLSQYLEFNPNVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILN+E+    KM
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKM 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI +LITALG GI  + F++  LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQSLITALGLGIKGEDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY +TRGK+ +Y  +E  ++  L +               G +    L
Sbjct: 540 VEGGYIYIACPPLYKVTRGKNHKYCYNESDMQKTLASFGEKANYTIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
            +       +D   +       +  +E   I  +   +
Sbjct: 600 WDT-----TMDPTTRMMKRVEIEDALEADRIFTILMGD 632



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 10/153 (6%)

Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNG 711
            + ++   R  R V      ++G+ I +    +   +   + E          L  +  G
Sbjct: 499 EDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDLVEGGYIYIACPPLYKVTRG 558

Query: 712 DKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
              K       +  T+ S G K   ++QR+KGLGEM   QLW+TT++P TR + RV+I D
Sbjct: 559 KNHKYCYNESDMQKTLASFGEKANYTIQRFKGLGEMMPKQLWDTTMDPTTRMMKRVEIED 618

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           A +AD +F+ LMGD+V PRREFI+ +     LD
Sbjct: 619 ALEADRIFTILMGDKVAPRREFIETH--SVDLD 649


>gi|229051162|ref|ZP_04194706.1| DNA gyrase subunit B [Bacillus cereus AH676]
 gi|228722225|gb|EEL73626.1| DNA gyrase subunit B [Bacillus cereus AH676]
          Length = 640

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 288/589 (48%), Positives = 407/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENTYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + I +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 540 FKIQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 154/448 (34%), Gaps = 47/448 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 207 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 265

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 266 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 313

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 314 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 373

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 374 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 433

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 434 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 493

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 494 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 552

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 553 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 612

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 613 FEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|229148043|ref|ZP_04276382.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24]
 gi|228635468|gb|EEK91959.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24]
          Length = 642

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 290/594 (48%), Positives = 409/594 (68%), Gaps = 9/594 (1%)

Query: 1   MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS     +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L
Sbjct: 1   MSMEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVS
Sbjct: 60  AGYCDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P
Sbjct: 120 GGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKP 178

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L
Sbjct: 179 DPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHL 237

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++AL
Sbjct: 238 NRSKQPIHEDPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTAL 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ 
Sbjct: 298 TRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTIT 357

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLAD
Sbjct: 358 ESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLAD 417

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T
Sbjct: 418 CSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRT 477

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +ITA+GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI
Sbjct: 478 IITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYI 536

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            +PPL+ I +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 AQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 590



 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 154/448 (34%), Gaps = 47/448 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   +   VEG   G   +       
Sbjct: 209 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEDPVYVEGSKDGIQVEVSLQYN- 267

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 268 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 315

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 316 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 375

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 376 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 435

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 436 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 495

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 496 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 554

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 555 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 614

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 615 FEILMGDKVEPRRNFIQENAKYVKNLDI 642


>gi|30018283|ref|NP_829914.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
 gi|228955743|ref|ZP_04117738.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|29893823|gb|AAP07115.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
 gi|228803971|gb|EEM50595.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 642

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 290/594 (48%), Positives = 409/594 (68%), Gaps = 9/594 (1%)

Query: 1   MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS     +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L
Sbjct: 1   MSMEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVS
Sbjct: 60  AGYCDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P
Sbjct: 120 GGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKP 178

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L
Sbjct: 179 DPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHL 237

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++AL
Sbjct: 238 NRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTAL 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ 
Sbjct: 298 TRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTIT 357

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLAD
Sbjct: 358 ESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLAD 417

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T
Sbjct: 418 CSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRT 477

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +ITA+GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI
Sbjct: 478 IITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYI 536

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            +PPL+ I +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 AQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 590



 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 154/448 (34%), Gaps = 47/448 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 209 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 267

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 268 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 315

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 316 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 375

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 376 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 435

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 436 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 495

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 496 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 554

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 555 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 614

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 615 FEILMGDKVEPRRNFIQENAKYVKNLDI 642


>gi|229199683|ref|ZP_04326326.1| DNA gyrase subunit B [Bacillus cereus m1293]
 gi|228583778|gb|EEK41953.1| DNA gyrase subunit B [Bacillus cereus m1293]
          Length = 640

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 290/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + I +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 540 FKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPAQLWE 588



 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 159/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 248 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 294

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 533

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  I  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 534 IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPAQLWETTMDP 593

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|206970026|ref|ZP_03230979.1| DNA gyrase, B subunit [Bacillus cereus AH1134]
 gi|218232402|ref|YP_002364860.1| DNA gyrase subunit B [Bacillus cereus B4264]
 gi|228961757|ref|ZP_04123360.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229072958|ref|ZP_04206154.1| DNA gyrase subunit B [Bacillus cereus F65185]
 gi|229112906|ref|ZP_04242437.1| DNA gyrase subunit B [Bacillus cereus Rock1-15]
 gi|229130739|ref|ZP_04259692.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4]
 gi|229153652|ref|ZP_04281828.1| DNA gyrase subunit B [Bacillus cereus m1550]
 gi|229181739|ref|ZP_04309062.1| DNA gyrase subunit B [Bacillus cereus 172560W]
 gi|229193744|ref|ZP_04320685.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876]
 gi|296500843|ref|YP_003662543.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171]
 gi|51988024|dbj|BAD44713.1| gyraseB [Bacillus cereus ATCC 14579]
 gi|206734603|gb|EDZ51772.1| DNA gyrase, B subunit [Bacillus cereus AH1134]
 gi|218160359|gb|ACK60351.1| DNA gyrase, B subunit [Bacillus cereus B4264]
 gi|228589769|gb|EEK47647.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876]
 gi|228601772|gb|EEK59270.1| DNA gyrase subunit B [Bacillus cereus 172560W]
 gi|228629838|gb|EEK86491.1| DNA gyrase subunit B [Bacillus cereus m1550]
 gi|228652756|gb|EEL08641.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4]
 gi|228670585|gb|EEL25898.1| DNA gyrase subunit B [Bacillus cereus Rock1-15]
 gi|228710204|gb|EEL62182.1| DNA gyrase subunit B [Bacillus cereus F65185]
 gi|228797951|gb|EEM44961.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296321895|gb|ADH04823.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171]
          Length = 640

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 288/589 (48%), Positives = 407/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + I +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 540 FKIQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 154/448 (34%), Gaps = 47/448 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 207 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 265

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 266 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 313

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 314 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 373

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 374 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 433

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 434 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 493

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 494 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 552

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 553 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 612

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 613 FEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|228924238|ref|ZP_04087509.1| DNA gyrase subunit B [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835456|gb|EEM80826.1| DNA gyrase subunit B [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 640

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 288/589 (48%), Positives = 406/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + I +GK +QY  ++  LE  L       +         G ++   L  
Sbjct: 540 FKIQQGKKIQYAYNDNELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 155/448 (34%), Gaps = 47/448 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 207 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 265

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 266 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 313

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 314 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 373

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 374 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 433

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 434 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 493

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 494 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 552

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
             + L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 553 NDNELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 612

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 613 FEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|30260200|ref|NP_842577.1| DNA gyrase subunit B [Bacillus anthracis str. Ames]
 gi|47525259|ref|YP_016608.1| DNA gyrase subunit B [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183044|ref|YP_026296.1| DNA gyrase subunit B [Bacillus anthracis str. Sterne]
 gi|49476686|ref|YP_034365.1| DNA gyrase subunit B [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65317473|ref|ZP_00390432.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bacillus anthracis str. A2012]
 gi|165873014|ref|ZP_02217635.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488]
 gi|167635023|ref|ZP_02393340.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442]
 gi|167641730|ref|ZP_02399973.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193]
 gi|170689461|ref|ZP_02880651.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465]
 gi|170707498|ref|ZP_02897951.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389]
 gi|177655278|ref|ZP_02936832.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174]
 gi|190569295|ref|ZP_03022189.1| DNA gyrase, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196036134|ref|ZP_03103534.1| DNA gyrase, B subunit [Bacillus cereus W]
 gi|196041949|ref|ZP_03109236.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99]
 gi|196045551|ref|ZP_03112782.1| DNA gyrase, B subunit [Bacillus cereus 03BB108]
 gi|206975909|ref|ZP_03236820.1| DNA gyrase, B subunit [Bacillus cereus H3081.97]
 gi|217957586|ref|YP_002336128.1| DNA gyrase subunit B [Bacillus cereus AH187]
 gi|218901211|ref|YP_002449045.1| DNA gyrase, B subunit [Bacillus cereus AH820]
 gi|227812683|ref|YP_002812692.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684]
 gi|228918105|ref|ZP_04081633.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228930499|ref|ZP_04093499.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931511|ref|ZP_04094421.1| DNA gyrase subunit B [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228949215|ref|ZP_04111483.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228988722|ref|ZP_04148807.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124996|ref|ZP_04254170.1| DNA gyrase subunit B [Bacillus cereus 95/8201]
 gi|229142242|ref|ZP_04270766.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26]
 gi|229187722|ref|ZP_04314858.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1]
 gi|229603398|ref|YP_002864662.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248]
 gi|254687066|ref|ZP_05150924.1| DNA gyrase subunit B [Bacillus anthracis str. CNEVA-9066]
 gi|254724151|ref|ZP_05185936.1| DNA gyrase subunit B [Bacillus anthracis str. A1055]
 gi|254742123|ref|ZP_05199810.1| DNA gyrase subunit B [Bacillus anthracis str. Kruger B]
 gi|254755967|ref|ZP_05207999.1| DNA gyrase subunit B [Bacillus anthracis str. Vollum]
 gi|254761353|ref|ZP_05213375.1| DNA gyrase subunit B [Bacillus anthracis str. Australia 94]
 gi|49066055|sp|Q9X3Y6|GYRB_BACAN RecName: Full=DNA gyrase subunit B
 gi|30253521|gb|AAP24063.1| DNA gyrase, B subunit [Bacillus anthracis str. Ames]
 gi|47500407|gb|AAT29083.1| DNA gyrase, B subunit [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176971|gb|AAT52347.1| DNA gyrase, B subunit [Bacillus anthracis str. Sterne]
 gi|49328242|gb|AAT58888.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51988026|dbj|BAD44714.1| gyraseB [Bacillus anthracis]
 gi|164711226|gb|EDR16782.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488]
 gi|167510284|gb|EDR85687.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193]
 gi|167529497|gb|EDR92247.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442]
 gi|170127494|gb|EDS96368.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389]
 gi|170666563|gb|EDT17336.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465]
 gi|172080205|gb|EDT65297.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174]
 gi|190559602|gb|EDV13593.1| DNA gyrase, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|195991301|gb|EDX55269.1| DNA gyrase, B subunit [Bacillus cereus W]
 gi|196023758|gb|EDX62434.1| DNA gyrase, B subunit [Bacillus cereus 03BB108]
 gi|196027204|gb|EDX65824.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99]
 gi|206746003|gb|EDZ57399.1| DNA gyrase, B subunit [Bacillus cereus H3081.97]
 gi|217063046|gb|ACJ77296.1| DNA gyrase, B subunit [Bacillus cereus AH187]
 gi|218537455|gb|ACK89853.1| DNA gyrase, B subunit [Bacillus cereus AH820]
 gi|227004428|gb|ACP14171.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684]
 gi|228595790|gb|EEK53474.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1]
 gi|228641260|gb|EEK97567.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26]
 gi|228658497|gb|EEL14163.1| DNA gyrase subunit B [Bacillus cereus 95/8201]
 gi|228771034|gb|EEM19515.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228810498|gb|EEM56851.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228828154|gb|EEM73878.1| DNA gyrase subunit B [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228829218|gb|EEM74855.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228841585|gb|EEM86701.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229267806|gb|ACQ49443.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248]
          Length = 640

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 289/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 159/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 248 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 294

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 533

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 534 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|217967929|ref|YP_002353435.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724]
 gi|217337028|gb|ACK42821.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724]
          Length = 635

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 298/642 (46%), Positives = 415/642 (64%), Gaps = 14/642 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +   Y ADSIQIL+G +AV++RP MYIGDT G  GLHH+I+E++DN+IDE + GY + I
Sbjct: 4   TKKDKYTADSIQILEGTEAVRRRPGMYIGDT-GIRGLHHLIFELVDNSIDEVMAGYCNYI 62

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS  V+DNGRGIP D+H +    A EV++T LHAGGKF+   YK+SGGLHGVG
Sbjct: 63  LVELKKDGSVVVADNGRGIPVDIHPQAKKPALEVVLTTLHAGGKFSNSIYKISGGLHGVG 122

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALSS L++ + R+G I+   +  G    PL V G   ++TGT++ F P S+IF  
Sbjct: 123 LSVVNALSSKLEVEVMRDGKIFYQGYEKGKPVMPLTVRGET-DETGTKIRFYPDSEIFET 181

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD + +RLREL+FLN +V I L D+R+ +       Y+GG+  F+ YL + K+ L 
Sbjct: 182 TKFDYDIVANRLRELAFLNPNVTIELRDERTGKSN--VFKYEGGLLEFIEYLSKGKEILH 239

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             PI ++   +N+ +++ M++N GY E +L + NNI   +GGTH++G R+ALTR + ++ 
Sbjct: 240 -EPIYMRREEENLIVEIVMQYNSGYDELILSYANNIHTIEGGTHVTGFRTALTRVVNNFA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K+++ S+ GDD REG T+++S+K+PDP+F  QTK KL ++EVR  VE  V + L
Sbjct: 299 RNWGLWKENE-SLSGDDVREGLTAIVSVKVPDPQFEGQTKTKLGNTEVRKFVEKVVEEEL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +  E+P   K+I+ K+++A   R AAR+AR+L RRK +L+ + LPGKLADCSERDP+K
Sbjct: 358 TEYFSENPEVGKLIISKIIEAYRARQAARKARELVRRKSLLESSLLPGKLADCSERDPEK 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF-DKMLSSQEIGTLITALGT 483
            ELF+VEG+SAGGSAKQ R R  QAILPLRGKILNVE+A+   K+LSS+EI  +I +LGT
Sbjct: 418 CELFIVEGESAGGSAKQARDRRYQAILPLRGKILNVEKAQHLTKILSSEEIKAIIASLGT 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG   FD++KLRYHKIIIMTDADVDGAHIRTLLLTFF+R    LI  G++YI +PPLY 
Sbjct: 478 GIG-QDFDLSKLRYHKIIIMTDADVDGAHIRTLLLTFFYRHFRPLIEGGYIYIAQPPLYL 536

Query: 544 ITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           + +GK  +Y   EE  E+ L                 G +    LR        +D   +
Sbjct: 537 LKKGKEERYAYSEEEKEEILREWGYPDNVYIQRYKGLGEMDPEQLRET-----TMDPQKR 591

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                  +  +E   +  +    + +E    +  K     N 
Sbjct: 592 ILLQVTIEDALEAERLFSILMGNNVEERRSFIEQKAKFVRNL 633



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 7/120 (5%)

Query: 691 RIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGE 744
           R F   IE  Y+ I       L    ++          + +   G    + +QRYKGLGE
Sbjct: 516 RHFRPLIEGGYIYIAQPPLYLLKKGKEERYAYSEEEKEEILREWGYPDNVYIQRYKGLGE 575

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           M+  QL ETT++P  R LL+V I DA +A+ LFS LMG+ VE RR FI++ +     LDI
Sbjct: 576 MDPEQLRETTMDPQKRILLQVTIEDALEAERLFSILMGNNVEERRSFIEQKAKFVRNLDI 635


>gi|42779086|ref|NP_976333.1| DNA gyrase subunit B [Bacillus cereus ATCC 10987]
 gi|42735001|gb|AAS38941.1| DNA gyrase, B subunit [Bacillus cereus ATCC 10987]
 gi|324323999|gb|ADY19259.1| DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 640

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 290/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + I +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 540 FKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 159/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 248 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 294

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 533

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  I  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 534 IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|225862062|ref|YP_002747440.1| DNA gyrase, B subunit [Bacillus cereus 03BB102]
 gi|225788933|gb|ACO29150.1| DNA gyrase, B subunit [Bacillus cereus 03BB102]
          Length = 640

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 289/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 160/474 (33%), Gaps = 47/474 (9%)

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERD 421
                + E    A  + +       ++      R+  ++K       +   +      + 
Sbjct: 181 FQETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQ 240

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P   E   VEG   G   +              G   N+         ++          
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTH 287

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI--- 536
             G       +      K  I+ DAD +  G  +R  L      + P+    G       
Sbjct: 288 EVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLG 347

Query: 537 ---IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKN 585
               +     +      +++ +  ++   ++         +  +++       K  +  +
Sbjct: 348 NSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVS 407

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            L   + D    D  I + Y     +    A      + ++   +   + +    RL+ I
Sbjct: 408 SLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKI 467

Query: 646 AEKSEKSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRI 692
               E     +        + DI   R  +        V    +      F +    + I
Sbjct: 468 LSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQII 527

Query: 693 FSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQL 750
               I       L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QL
Sbjct: 528 EHGYIY-IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQL 586

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           WETT++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 587 WETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|118475783|ref|YP_892934.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam]
 gi|118415008|gb|ABK83427.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam]
          Length = 645

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 289/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 9   KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 67

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 68  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 127

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 128 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 186

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 187 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 245

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 246 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 305

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 306 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 365

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 366 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 425

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 426 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 485

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 486 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 544

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 545 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 593



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 159/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 193 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 252

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 253 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 299

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 300 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 359

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 360 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 419

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 420 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 479

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 480 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 538

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 539 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 598

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 599 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 645


>gi|222093779|ref|YP_002527826.1| DNA gyrase subunit b [Bacillus cereus Q1]
 gi|221237824|gb|ACM10534.1| DNA gyrase, B subunit [Bacillus cereus Q1]
          Length = 640

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 290/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + I +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 540 FKIQQGKKIQYAYNEKELEKILDELPAQPKPGIQRYKGLGEMNPAQLWE 588



 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 158/467 (33%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 248 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 294

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 533

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  I  G KI+       L+ I      +    +QRYKGLGEMN +QLWETT++P
Sbjct: 534 IAQPPLFKIQQGKKIQYAYNEKELEKILDELPAQPKPGIQRYKGLGEMNPAQLWETTMDP 593

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|256831260|ref|YP_003159987.1| DNA gyrase, B subunit [Jonesia denitrificans DSM 20603]
 gi|256684791|gb|ACV07684.1| DNA gyrase, B subunit [Jonesia denitrificans DSM 20603]
          Length = 686

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 276/639 (43%), Positives = 389/639 (60%), Gaps = 29/639 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
               +YDA++I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+ D I
Sbjct: 22  QHQGAYDANAITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHCDTI 80

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+  DG+  VSDNGRGIP  +H  EG    EV+MT LHAGGKF    Y VSGGLHGVG
Sbjct: 81  NVTILEDGALEVSDNGRGIPVAIHPTEGRPTVEVVMTILHAGGKFGGSGYAVSGGLHGVG 140

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           +SVVNALSS ++  I+R+G  +  SF + G     L   G    + GT  TF P +DIF 
Sbjct: 141 ISVVNALSSRVETVIRRDGYTWHQSFADGGKPVGELRQ-GEPTEEKGTTQTFWPDADIFE 199

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-------------------PREITMF 224
             DF+++TL+ R ++++FLN  + I+L DKR                       + +T  
Sbjct: 200 TVDFDFETLRARFQQMAFLNKGLSITLTDKRPDHADVSGDEVAGGDNSPTSERIKTVTYK 259

Query: 225 YKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
           Y  G+  +V +L+  K  + +    I          IS+++AM+W   Y E+V  + N I
Sbjct: 260 YDAGLLDYVHHLNTAKRVEVIHDEIIDFDAEDTDRKISVEIAMQWTTAYSESVHTYANTI 319

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  I  Y       K+   ++ G+D REG T+V+S+K+ +P+F 
Sbjct: 320 STTEGGTHEEGFRAALTSLINRYARAKNILKEKDDNLTGEDIREGLTAVISVKLGEPQFE 379

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++E R+ V+S +N+ ++ WL+ HP EAK I++K + AS  R AAR+AR+ TR
Sbjct: 380 GQTKTKLGNTEARTFVQSIMNEKMNDWLDAHPNEAKEIIRKAIQASQARLAARKAREATR 439

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG+L+   +PGKL DC    P++ E+++VEGDSAGGSA +GR+   QAILPLRGKILNV
Sbjct: 440 RKGLLESGGMPGKLRDCQSNRPEECEIYIVEGDSAGGSAVRGRNPHIQAILPLRGKILNV 499

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           ERAR DK LS+ E+  LITA GTGIG+D FD++KLRYHKI++M DADVDG HI TLLLT 
Sbjct: 500 ERARLDKALSNAEVQALITAFGTGIGED-FDMSKLRYHKIVLMADADVDGQHICTLLLTL 558

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            FR M  LI +G +++ +PPLY I    +       +   D  I + L+    +  D+  
Sbjct: 559 LFRYMRPLIEHGHVFLAQPPLYRIKWTNAEHDYVFSDKQRDDCIREGLAAGKRIPKDNG- 617

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
            I +      +D +   D  +   +    +  +E A  +
Sbjct: 618 -IQRYKGLGEMDYSELWDTTMDPEHRTLLQVTLEDAAAA 655



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ S+LW+TT++P+ R+LL+V + DA+ AD++F+ LMG++VE RR FIQ N
Sbjct: 618 IQRYKGLGEMDYSELWDTTMDPEHRTLLQVTLEDAAAADEMFAILMGEDVESRRNFIQRN 677

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 678 ARDVRFLDI 686


>gi|301051746|ref|YP_003789957.1| DNA topoisomerase IV subunit B [Bacillus anthracis CI]
 gi|300373915|gb|ADK02819.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis
           str. CI]
          Length = 640

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 288/589 (48%), Positives = 407/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L + G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKIIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 159/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 248 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 294

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 533

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 534 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|317498962|ref|ZP_07957245.1| hypothetical protein HMPREF0996_02229 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893795|gb|EFV15994.1| hypothetical protein HMPREF0996_02229 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 637

 Score =  593 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/618 (39%), Positives = 368/618 (59%), Gaps = 8/618 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N +YDA+SI +L+GL+AV+KRP MYIG      GL+H+IYE++DN++DE L GY D I
Sbjct: 1   MANKTYDANSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNSVDEFLAGYCDEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TV+LN DG+ T++DNGRGIP  +++  G +A E++ T LHAGGKF    YK+SGGLHGVG
Sbjct: 60  TVSLNKDGTATITDNGRGIPVGINERTGKTAVEMVFTMLHAGGKFGDGGYKISGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
            SVVNALS+WL + +K+ G +Y+  +  G +  PL V G+   +DTGT V FLP  +IF 
Sbjct: 120 ASVVNALSTWLTVTVKQGGKVYQQRYERGKIITPLEVIGTCRKSDTGTNVQFLPDPEIFD 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F    +++RL E ++LN  + I  +++R  E   +      GI A+V  L+  K+ L
Sbjct: 180 KTYFKAAMVRNRLHETAYLNPKLTIHYVNEREGEETTVDYHEPEGICAYVKKLNEGKQML 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              P+  +   D I  ++A ++ + + EN+L F NNI   +GGTH++G ++  T  +  Y
Sbjct: 240 H-EPVYFKRMIDGIEAEVAFQYTEDFGENILGFCNNIYTIEGGTHITGFKTKFTTIMNQY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             +    K+   +  G D R G T+++S+K P+PRF  QTK KL + +    V     + 
Sbjct: 299 AREIGVLKEKDSNFTGTDVRNGMTAIVSVKHPEPRFEGQTKTKLDNPDAAKAVGEIAGEE 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  + +++    K ++     ++ +R A  +A+     K  L I S  GKLA+C  R  +
Sbjct: 359 LVLYFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNMLVKQKLSIDS-NGKLANCESRKAQ 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             E+F+VEGDSAGGSAK  R+R+ QAILP+RGKILNVE+A  DK+L++ EI T+I A G 
Sbjct: 418 DCEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKATMDKVLANAEIKTMINAFGC 477

Query: 484 GIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           G  +   + FDI+KLRYHKIIIMTDADVDGAHI TLLLTFF+R MP LI +G +++  PP
Sbjct: 478 GFSEGYGNDFDISKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPELITHGHVFLATPP 537

Query: 541 LYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY    +     Y+ D+ +L  Y      +  ++ +     + ++      ++   +  K
Sbjct: 538 LYKAMPKKGEETYLFDDAALTRYRAEHKGNFTLQRYKGLGEMDAQQLWETTLNPESRTLK 597

Query: 600 LIKDFYPNHDKTFIEQAV 617
            I+              +
Sbjct: 598 QIEIEDARMASDVTSMLM 615



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 13/268 (4%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +   ++  + E++  + L+ Q LS +      +       D   FI +        K
Sbjct: 376 CAEKSAKIRKAE-EKAKTNMLVKQKLSIDSNGKLANCESRKAQDCEIFIVEGDSAGGSAK 434

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +  +   +   + N E      V   +++   +N       + +    + S +
Sbjct: 435 TARNRKTQAIL--PIRGKILNVEKATMDKVLANAEIKTMINAFGCGFSEGYGNDFDISKL 492

Query: 663 LVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSLI---CNGDKIK 715
              +I   +     ++G+ I +    F  ++             T          G++  
Sbjct: 493 RYHKII--IMTDADVDGAHIATLLLTFFYRFMPELITHGHVFLATPPLYKAMPKKGEETY 550

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +    + L    +  +   ++QRYKGLGEM+A QLWETTLNP++R+L +++I DA  A D
Sbjct: 551 LFD-DAALTRYRAEHKGNFTLQRYKGLGEMDAQQLWETTLNPESRTLKQIEIEDARMASD 609

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALDI 803
           + S LMG  V PRR+FI EN+  + LDI
Sbjct: 610 VTSMLMGSNVPPRRQFIYENANEAMLDI 637


>gi|309388287|gb|ADO76167.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228]
          Length = 640

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 273/583 (46%), Positives = 395/583 (67%), Gaps = 4/583 (0%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y+A+ IQ+L+GL+AV+KRP MYIG T  E GLHH++YEV+DN+IDE++ GY   + V +
Sbjct: 8   NYEAEHIQVLEGLEAVRKRPGMYIGSTSLE-GLHHLVYEVVDNSIDEAMAGYCSEVIVEI 66

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
                  V D+GRGIP ++H +    A EV+MT LHAGGKF  + YKVSGGLHGVG+SVV
Sbjct: 67  KPGNIIKVQDDGRGIPVEIHPKVDKPAVEVVMTTLHAGGKFGGEGYKVSGGLHGVGISVV 126

Query: 129 NALSSWLKLRI-KREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQD 186
           NAL+ W+++ I  ++G +Y+  +  GI  + L + G+   + TGT + F P   IF   D
Sbjct: 127 NALTEWMEVEIAWKDGKVYKQKYERGIPQHELQLIGNCDGNCTGTTIEFKPDPLIFEEID 186

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F++  L  RL+EL+FLN  + I ++D R  E ++    + GG+ +FV YL + KKPL+  
Sbjct: 187 FDFKLLAKRLKELAFLNKGINIKIVDNRKEEVQQEDFHFDGGLISFVEYLSQSKKPLLSE 246

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI I+   +  SI++A+ ++ GY+ ++  F NNI  K+GGTHLSG +SA TR    Y   
Sbjct: 247 PIYIEDEAEEGSIEVAIMYHQGYNTSLYTFANNINTKEGGTHLSGFKSATTRTFNDYARN 306

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K    ++ G D REG  +++S+K+ +P+F  QTK KL +SE+R  V+S V+  L  
Sbjct: 307 KNLLKDGDDNLKGQDIREGMIAIISVKLSEPQFEGQTKTKLGNSEMRGFVDSAVSSFLKT 366

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P   K I++K + A+  R AAR+ARDLTRRK  L   +LPGKLADCS+R    +E
Sbjct: 367 YLEENPKVGKAIIEKAISAAHARKAARKARDLTRRKSALTSTALPGKLADCSKRKADDTE 426

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR+RE QAILPL+GKILNVE++R +K+L++ EI  LITA+GTG+G
Sbjct: 427 VYIVEGDSAGGSAKQGRNREFQAILPLKGKILNVEKSRLNKILNNDEIRALITAIGTGVG 486

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           ++ FD+  +RY +IIIMTDADVDGAHIRTLLLTFF+R M  L+ NG +YI +PPLY + +
Sbjct: 487 EE-FDLTNIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMRPLLENGNIYIAQPPLYKVKK 545

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           G+  +YV ++++L++ +                G ++ + L +
Sbjct: 546 GRREEYVYNDKALKELIEEIGKDRVSMQRYKGLGEMNPSQLWD 588



 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  I     + +  +    D ++      V    +    
Sbjct: 457 ILNVEKSRLNKILNNDEIRALITAIGTGVGEEFDLTNIRYDRIIIMTDADVDGAHIRTLL 516

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      + +  I      +  +     +  +    +L + I  IG+  +SMQRYK
Sbjct: 517 LTFFYRYMRPLLENGNIYIAQPPLYKVKKGRREEYVYNDKALKELIEEIGKDRVSMQRYK 576

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN SQLW+TT++P+ R LL+V I DA +AD+ FS LMGD+V PRREFIQ+++    
Sbjct: 577 GLGEMNPSQLWDTTMDPENRILLQVDIEDAIRADETFSILMGDKVAPRREFIQKHAREVK 636

Query: 800 ALDI 803
            LD+
Sbjct: 637 NLDV 640


>gi|222479425|ref|YP_002565662.1| DNA gyrase, B subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222452327|gb|ACM56592.1| DNA gyrase, B subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 645

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 288/598 (48%), Positives = 391/598 (65%), Gaps = 14/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    S Y A  IQ+L+GL AV+KRP+MYIG TD   GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MSEQ---SEYGAGQIQVLEGLQAVRKRPAMYIGSTD-GRGLHHLVYEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +VSD+GRGIP D+H++    A EVIMT LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDDITVTIHDDNSVSVSDDGRGIPVDIHEKYDRPALEVIMTILHAGGKFDSKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGS--AGNDTGTEVTFLP 177
           HGVGVSVVNALS  L++ +KR+G +Y   F  G                 +TGT + F P
Sbjct: 117 HGVGVSVVNALSERLEVEVKRDGGVYRHEFARGEPAEDGFERVRDLNDDEETGTYIRFWP 176

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAF 232
             +IF    F + TL  RLREL+FLNS V ++LID+R  E       E T  Y+GGI  F
Sbjct: 177 DEEIFETTAFEFSTLASRLRELAFLNSGVAVTLIDERDEEGVDDAGDEETFRYEGGIREF 236

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+  + P+    I  +   D+I +++AM+  +    +V  F NNI  ++GGTHL+G 
Sbjct: 237 VGYLNEARTPIHDEVIYFEDEDDDIHVEVAMQATEELQGSVHAFANNINTREGGTHLTGF 296

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ALTR +  Y          + ++ G+D REG T+V+S+K PDP+F  QTK KL +SEV
Sbjct: 297 KTALTRTVNDYANTHGLVDDLEANLKGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEV 356

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R +VES  +D L  + EE+P  A+ +V K  +A+  R AA++A +LTRRK  L+  +LPG
Sbjct: 357 RGIVESATHDKLGTFFEENPDTARKVVHKAAEAARARKAAKKAEELTRRKSALESTALPG 416

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC  RDP+++ELF+VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ R D++L + 
Sbjct: 417 KLADCQTRDPEEAELFVVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKHRLDRILEND 476

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI  LITA+G GIG++ FDI+ +RY+KIIIMTDADVDGAHIRTLLLT  +R M  L+  G
Sbjct: 477 EIRALITAIGAGIGEE-FDIDDVRYNKIIIMTDADVDGAHIRTLLLTLLYRHMKPLLEAG 535

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589
           ++Y  +PPLY +           E   +  +  +   +          G ++ + L +
Sbjct: 536 YVYAAQPPLYRVRYRGETYDAMTEAERDRIVAEECDGNPAQVQRFKGLGEMNPDQLWD 593



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QR+KGLGEMN  QLW+TT++P+ R L R+ I DA+ AD +F+ LMGD VEPR++FI+E
Sbjct: 576 QVQRFKGLGEMNPDQLWDTTMDPENRRLKRINIDDAAAADRMFNVLMGDAVEPRKQFIKE 635

Query: 795 NSLPSA-LDI 803
           ++  +  +DI
Sbjct: 636 HATEAEWVDI 645


>gi|284165545|ref|YP_003403824.1| DNA gyrase B subunit [Haloterrigena turkmenica DSM 5511]
 gi|284015200|gb|ADB61151.1| DNA gyrase, B subunit [Haloterrigena turkmenica DSM 5511]
          Length = 644

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 281/597 (47%), Positives = 392/597 (65%), Gaps = 13/597 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q S Y A  IQ+L+GL+AV+KRP+MYIG TD   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MS---QESEYGAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV++N DGS +V+D+GRGIP D H E    A EVI+T LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDDITVSINDDGSVSVADDGRGIPVDTHDEYDRPALEVILTVLHAGGKFDNKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPS 178
           HGVGVSVVNALS  L+  +KR+G+++  +F  G     +          +TGT++ F P 
Sbjct: 117 HGVGVSVVNALSERLEAEVKRDGSVFRHAFEAGEPVGDMERVRDMEPDEETGTQIRFWPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----EPREITMFYKGGIEAFV 233
           + IF   +F++ TL +RLREL+FLNS V I+L D+R       +  E T  Y+GGI  FV
Sbjct: 177 TGIFESGEFSFSTLSNRLRELAFLNSGVHITLRDEREEATEGDDLVEETYEYQGGIREFV 236

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+  +  +    I  +    NI +++AM+  +    ++  F NNI  ++GGTHL+G +
Sbjct: 237 EYLNETRSAMHDDVIYFEAEEQNIQVEVAMQATEELQGSIHAFANNINTREGGTHLTGFK 296

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y + +      + ++ G+D REG T+V+S+K PDP+F  QTK KL +SEVR
Sbjct: 297 TALTRTVNDYAKDNDMLGDLEDNLKGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVR 356

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VES +++GL  + EEHP  A+ IV K ++A+  R AA++A +LTRRK  L+  SLPGK
Sbjct: 357 GIVESSMHEGLGTYFEEHPDTAQAIVTKAVEAAKARKAAQKAEELTRRKSALESTSLPGK 416

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC  +DP ++ELF+ EGDSAGGSAKQ R+ + QAILP++GKILNVE+ R D++L + E
Sbjct: 417 LADCQTKDPDEAELFIAEGDSAGGSAKQARNPDFQAILPIKGKILNVEKHRLDRILENDE 476

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  +ITA+G GIG D FD+  +RY KII+ TDADVDGAHIRTLLLTFF+R M  L+  G+
Sbjct: 477 IRNMITAIGAGIG-DEFDVEDVRYKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGY 535

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589
           +Y  +PPLY I           E   ++ +  +   +          G ++   L +
Sbjct: 536 VYATQPPLYRIRYRGETYDAMTEAERDEIVAEKCDGNPSQVQRFKGLGEMNPQQLWD 592



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++ N +  I       +         ++      V    +    
Sbjct: 460 ILNVEKHRLDRILENDEIRNMITAIGAGIGDEFDVEDVRYKKIIMATDADVDGAHIRTLL 519

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738
             F +      +    +      +  +   G+           D I +    G    +QR
Sbjct: 520 LTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTEAER-DEIVAEKCDGNPSQVQR 578

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +KGLGEMN  QLW+TT++PD R L ++ I DA+ AD +FS LMGD VEPR++FI++N+  
Sbjct: 579 FKGLGEMNPQQLWDTTMDPDNRILKQITIEDAAAADKMFSVLMGDAVEPRKQFIKDNAPE 638

Query: 799 SA-LDI 803
           +  +DI
Sbjct: 639 AEWIDI 644


>gi|229035151|ref|ZP_04189097.1| DNA gyrase subunit B [Bacillus cereus AH1271]
 gi|228728217|gb|EEL79247.1| DNA gyrase subunit B [Bacillus cereus AH1271]
          Length = 640

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 286/589 (48%), Positives = 404/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             ++ +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMEENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++ + DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETIVYEFDTLATRMRELAFLNRNIKLIIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/444 (20%), Positives = 155/444 (34%), Gaps = 47/444 (10%)

Query: 393 RRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
              R+  ++K       +   +      + P   E   VEG S  G   +   + N+   
Sbjct: 211 EDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEG-SKDGIQVEVALQYNEG-- 267

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD-- 509
                             ++            G       +      K  I+ DAD +  
Sbjct: 268 ----------YTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLT 317

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYL 563
           G  +R  L      + P+    G           +     +      +++ +  ++   +
Sbjct: 318 GEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKI 377

Query: 564 IN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           I+        +  +++       K  +  + L   + D    D  I + Y     +    
Sbjct: 378 IDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGS 437

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR 669
           A      + ++   +   + +    RL+ I    E     +        + DI   R  +
Sbjct: 438 AKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHK 497

Query: 670 -------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
                   V    +      F +    + I    I       L  +  G KI+       
Sbjct: 498 VIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNDKE 556

Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  L
Sbjct: 557 LEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEIL 616

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+VEPRR FIQEN+     LDI
Sbjct: 617 MGDKVEPRRNFIQENAKYVKNLDI 640


>gi|228911333|ref|ZP_04075137.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200]
 gi|228848351|gb|EEM93201.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200]
          Length = 642

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 288/594 (48%), Positives = 407/594 (68%), Gaps = 9/594 (1%)

Query: 1   MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS     +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L
Sbjct: 1   MSMEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVS
Sbjct: 60  AGYCDEINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P
Sbjct: 120 GGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKP 178

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L
Sbjct: 179 DPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHL 237

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +R K+P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++AL
Sbjct: 238 NRSKQPIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTAL 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ 
Sbjct: 298 TRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTIT 357

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES  ++    +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLAD
Sbjct: 358 ESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLAD 417

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T
Sbjct: 418 CSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRT 477

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +ITA+GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI
Sbjct: 478 IITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYI 536

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            +PPL+ + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 AQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 590



 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/469 (19%), Positives = 156/469 (33%), Gaps = 51/469 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 190 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 249

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 250 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 296

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 297 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 356

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 357 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 414

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 415 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 474

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 475 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 534

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 535 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 593

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 594 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 642


>gi|167766557|ref|ZP_02438610.1| hypothetical protein CLOSS21_01063 [Clostridium sp. SS2/1]
 gi|167711680|gb|EDS22259.1| hypothetical protein CLOSS21_01063 [Clostridium sp. SS2/1]
 gi|291558595|emb|CBL37395.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SSC/2]
          Length = 637

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/618 (39%), Positives = 368/618 (59%), Gaps = 8/618 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N +YDA+SI +L+GL+AV+KRP MYIG      GL+H+IYE++DN++DE L GY D I
Sbjct: 1   MANKTYDANSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNSVDEFLAGYCDEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TV+LN DG+ T++DNGRGIP  +++  G +A E++ T LHAGGKF    YK+SGGLHGVG
Sbjct: 60  TVSLNKDGTATITDNGRGIPVGINERTGKTAVEMVFTMLHAGGKFGDGGYKISGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
            SVVNALS+WL + +K+ G +Y+  +  G +  PL V G+   +DTGT V FLP  +IF 
Sbjct: 120 ASVVNALSTWLTVTVKQGGKVYQQRYERGKIITPLEVIGTCRKSDTGTNVQFLPDPEIFD 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F    +++RL E ++LN  + I  +++R  E   +      GI A+V  L+  K+ L
Sbjct: 180 KTYFKAAMVRNRLHETAYLNPKLTIHYVNEREGEETTVDYHEPEGICAYVKKLNEGKQML 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              P+  +   D I  ++A ++ + + EN+L F NNI   +GGTH++G ++  T  +  Y
Sbjct: 240 H-EPVYFKRMIDGIEAEVAFQYTEDFGENILGFCNNIYTIEGGTHITGFKTKFTTIMNQY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             +    K+   +  G D R G T+++S+K P+PRF  QTK KL + +    V     + 
Sbjct: 299 AREIGVLKEKDSNFTGTDVRNGMTAIVSVKHPEPRFEGQTKTKLDNPDAAKAVGEIAGEE 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  + +++    K ++     ++ +R A  +A+     K  L I S  GKLA+C  R  +
Sbjct: 359 LVLYFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNMLVKQKLSIDS-NGKLANCESRKAQ 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             E+F+VEGDSAGGSAK  R+R+ QAILP+RGKILNVE+A  DK+L++ EI T+I A G 
Sbjct: 418 DCEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKATMDKVLANAEIKTMINAFGC 477

Query: 484 GIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           G  +   + FDI+KLRYHKIIIMTDADVDGAHI TLLLTFF+R MP LI +G +++  PP
Sbjct: 478 GFSEGYGNDFDISKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPELITHGHVFLATPP 537

Query: 541 LYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY    +     Y+ D+ +L  Y      +  ++ +     + ++      ++   +  K
Sbjct: 538 LYKAMPQKGEETYLFDDAALTRYRAEHKGNFTLQRYKGLGEMDAQQLWETTLNPESRTLK 597

Query: 600 LIKDFYPNHDKTFIEQAV 617
            I+              +
Sbjct: 598 QIEIEDARMASDITSMLM 615



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 13/268 (4%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +   ++  + E++  + L+ Q LS +      +       D   FI +        K
Sbjct: 376 CAEKSAKIRKAE-EKAKTNMLVKQKLSIDSNGKLANCESRKAQDCEIFIVEGDSAGGSAK 434

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +  +   +   + N E      V   +++   +N       + +    + S +
Sbjct: 435 TARNRKTQAIL--PIRGKILNVEKATMDKVLANAEIKTMINAFGCGFSEGYGNDFDISKL 492

Query: 663 LVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSLI---CNGDKIK 715
              +I   +     ++G+ I +    F  ++             T          G++  
Sbjct: 493 RYHKII--IMTDADVDGAHIATLLLTFFYRFMPELITHGHVFLATPPLYKAMPQKGEETY 550

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +    + L    +  +   ++QRYKGLGEM+A QLWETTLNP++R+L +++I DA  A D
Sbjct: 551 LFD-DAALTRYRAEHKGNFTLQRYKGLGEMDAQQLWETTLNPESRTLKQIEIEDARMASD 609

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALDI 803
           + S LMG +V PRR+FI EN+  + LDI
Sbjct: 610 ITSMLMGSDVPPRRQFIYENANEAMLDI 637


>gi|123967056|ref|YP_001012137.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9515]
 gi|123201422|gb|ABM73030.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9515]
          Length = 655

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 283/653 (43%), Positives = 405/653 (62%), Gaps = 19/653 (2%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+    N  ++ Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+
Sbjct: 1   MSEEKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+ D I + L  DGS ++SDNGRGIPTD+H   G SA E ++T LHAGGKF    YKV
Sbjct: 60  LAGHCDQIEIVLKDDGSASISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVT 174
           SGGLHGVG+SVVNALS W+ + + REG+ +   F  GI    L      +     GT + 
Sbjct: 120 SGGLHGVGISVVNALSEWVNVTVFREGSEFTQRFERGITKGELKTQKQQNKSLRKGTIIC 179

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGI 229
           F P + IF+   +F+Y  L  RLREL++LN  V+I  ID+         +E    Y GGI
Sbjct: 180 FKPDTTIFTDGIEFDYALLSSRLRELAYLNGGVKIIFIDERQKLPDGSFKEEIYLYDGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V Y+++ K+ +    I +   +DN+ ++ A++W  D Y +N+L F NNI   DGGTH
Sbjct: 240 KEYVQYINKEKESIHSEIIYVDSQKDNVYVEAALQWCSDVYSDNILGFANNIRTIDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR   +  +K    K+  +++ G++ REG T VLS+K+PDP F  QTK KL 
Sbjct: 300 IEGLKTVLTRTFNAIAKKRGKRKEVDKNLSGENIREGLTVVLSVKVPDPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S + + L+ ++E +P    +I++K + +    +AA+RARDL RRK VL+ +
Sbjct: 360 NTEVRGIVDSLIGESLTKYMEFNPNVFDLILEKAIQSFNAAEAAKRARDLVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP  SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSGSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDTKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI +LITALG GI  + FD+N LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQSLITALGLGIKGEEFDVNSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQREL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  GF+YI  PPLY + RGK+ +Y  +E  L+  + +               G +    L
Sbjct: 540 VEKGFIYIACPPLYKVERGKNHKYCYNEGQLKKTIEDFGEKANYNIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            +       ++   +       +  +E   I  +   +        + +  AN
Sbjct: 600 WDT-----TMNPETRMMKKVEIEDALEADRIFNILMGDKVAPRREFIETHSAN 647



 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 130/328 (39%), Gaps = 31/328 (9%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDY 562
           D ++ G +IR  L      ++P     G     +    + GI      + +         
Sbjct: 325 DKNLSGENIREGLTVVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLIGESLTKYMEFNPN 384

Query: 563 LINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQAV 617
           + +  L + I+ F  ++      DL  R  + ++  +   + D         + +I +  
Sbjct: 385 VFDLILEKAIQSFNAAEAAKRARDLVRRKSVLESSTLPGKLADCSSRDPSGSEIYIVEGD 444

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDIL 663
            +G    +       ++       LN       K +  +                  D+ 
Sbjct: 445 SAGGSAKQGRDRKFQAILPLRGKILNIEKTDDTKIYKNTEIQSLITALGLGIKGEEFDVN 504

Query: 664 VKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNR-IEENYLTILSLICNGDKIK-I 716
             R  R V      ++G+ I +    F  +Y+R    +         L  +  G   K  
Sbjct: 505 SLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVEKGFIYIACPPLYKVERGKNHKYC 564

Query: 717 TGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                L  TI   G K   ++QR+KGLGEM   QLW+TT+NP+TR + +V+I DA +AD 
Sbjct: 565 YNEGQLKKTIEDFGEKANYNIQRFKGLGEMMPKQLWDTTMNPETRMMKKVEIEDALEADR 624

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALDI 803
           +F+ LMGD+V PRREFI+ +   + LDI
Sbjct: 625 IFNILMGDKVAPRREFIETH--SANLDI 650


>gi|218895146|ref|YP_002443557.1| DNA gyrase, B subunit [Bacillus cereus G9842]
 gi|228905437|ref|ZP_04069392.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
 gi|228968646|ref|ZP_04129629.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218542098|gb|ACK94492.1| DNA gyrase, B subunit [Bacillus cereus G9842]
 gi|228791075|gb|EEM38693.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228854257|gb|EEM98960.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
          Length = 640

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 286/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/469 (19%), Positives = 156/469 (33%), Gaps = 51/469 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 248 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 294

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 295 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 412

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 413 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 472

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 473 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 532

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 533 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 591

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 592 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|313892202|ref|ZP_07825795.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E]
 gi|313119340|gb|EFR42539.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E]
          Length = 646

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 307/653 (47%), Positives = 417/653 (63%), Gaps = 18/653 (2%)

Query: 1   MSDNIQNSS--------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           MS+  + +         Y A  I++L+GL+AV+ RP MYIG T    GLHH++YEV+DN+
Sbjct: 1   MSEENRKAGASGRKDGHYSAKDIRVLEGLEAVRLRPGMYIGSTSA-RGLHHLVYEVVDNS 59

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+   I V+LN DGSCTV DNGRGIPT +H E G  A EV++T LHAGGKF  +
Sbjct: 60  IDEALAGFCTHIEVSLNDDGSCTVVDNGRGIPTGMH-ETGKPAMEVVLTVLHAGGKFGGE 118

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            Y +SGGLHGVG+SVVNALS W K+ ++R+G  +EM+F  G +   +   G    +TGT 
Sbjct: 119 GYAISGGLHGVGISVVNALSEWTKVNVRRDGKFHEMAFCRGDVTESMRTYGETS-ETGTT 177

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           VTF P   IF    DF+YDTL+ R+REL+FLN  ++I+L D R    R     Y GGI  
Sbjct: 178 VTFKPDPLIFKEGTDFDYDTLKVRMRELAFLNKGLRITLSDNRDGVSRVEEFHYAGGIVE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           F+ +L+  K  +    I  +G RD I +D+AM++  GY E++  F N+I   +GG HLSG
Sbjct: 238 FIKFLNEGKDAVHDDVISFEGERDKIIVDIAMQYQTGYSESMYTFVNDINTTEGGMHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR I  Y   +   K+++ ++ GDD REG T V+S+K+P+P+F  QTK KL + E
Sbjct: 298 FRSALTRTINDYARTNNLLKENEDNLTGDDVREGLTCVISVKVPNPQFEGQTKTKLGNLE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ VV++ V++GL  +LEEHP EA++IV+K + AS  R+AA+RAR+LTRRK  L+++SLP
Sbjct: 358 VKGVVDNIVSEGLHIYLEEHPAEARLIVEKGITASRAREAAKRARELTRRKNALEVSSLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL+DCSE+DPKK+E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L+S
Sbjct: 418 GKLSDCSEKDPKKTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKARVDRVLNS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
             I  +ITA GTG+  + FDI+KLRY+KIIIMTDADVDGAHIRTLLLTFF+R M  LI  
Sbjct: 478 DTIRMMITAFGTGV-SEGFDISKLRYYKIIIMTDADVDGAHIRTLLLTFFYRYMKPLITE 536

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI KPPLY + +G+   Y  D++     L                G +    L N  
Sbjct: 537 GHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDGCTIQRYKGLGEMDPEQLWNT- 595

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                ++   +          +E   +  +   +  +     +     N  N 
Sbjct: 596 ----TMNPEQRVMMRVELTDAVEADRLFTILMGDKVEPRRKFIEENAMNVTNL 644



 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 3/126 (2%)

Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQR 738
            + +F  +Y + + +          L  +  G +   T      + +    GR G ++QR
Sbjct: 521 LLLTFFYRYMKPLITEGHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDGCTIQR 580

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLW TT+NP+ R ++RV++TDA +AD LF+ LMGD+VEPRR+FI+EN++ 
Sbjct: 581 YKGLGEMDPEQLWNTTMNPEQRVMMRVELTDAVEADRLFTILMGDKVEPRRKFIEENAMN 640

Query: 799 S-ALDI 803
              LDI
Sbjct: 641 VTNLDI 646


>gi|313205819|ref|YP_004044996.1| DNA gyrase subunit b [Riemerella anatipestifer DSM 15868]
 gi|312445135|gb|ADQ81490.1| DNA gyrase subunit B [Riemerella anatipestifer DSM 15868]
 gi|315022785|gb|EFT35809.1| DNA gyrase subunit B [Riemerella anatipestifer RA-YM]
          Length = 644

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 281/595 (47%), Positives = 393/595 (66%), Gaps = 12/595 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N  Y A SIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L GY D I
Sbjct: 1   MSNKQYTASSIQSLEGIEHVRLRPSMYIGDV-GVRGLHHLVYEVVDNSIDEALAGYCDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVT++   + +V DNGRGIP D H++E  SA EV+MT++ AGGKF++ SYKVSGGLHGVG
Sbjct: 60  TVTIHEGNAISVKDNGRGIPVDFHEKEQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALS+     + REG IY+  +  G     +   G   +  GTEV F P   IF+ 
Sbjct: 120 VSCVNALSTSTIATVYREGKIYQQKYSKGRALEDVQEIG-TTDYRGTEVFFQPDDSIFNE 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHK 240
             +NYDTL  RLREL+FLN  + I++ D+R      E    T   +GG++ FV ++D ++
Sbjct: 179 LVYNYDTLSARLRELAFLNKGINITITDERVKDEKGEFLTETFLSEGGLKEFVEFIDGNR 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +M++ I ++G RD+I +++AMR+N  + EN+  + NNI   +GGTHL+G R ALTR +
Sbjct: 239 ESIMENVIFMEGERDDIPVEVAMRYNTSFTENLHSYVNNINTHEGGTHLTGFRRALTRTL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +     +K+K  + GDD REG T+V+S+K+ +P+F  QTK KL +SEV   V+  V
Sbjct: 299 KKYADDLGIPQKEKVEITGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAVDKIV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +LEE+P EAK IV+KV+ A+  R AA++AR++ +RK  +  A LPGKL+DCS +
Sbjct: 359 GEMLTNFLEENPTEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGAGLPGKLSDCSSK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SE+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++   K+  ++EI  + TA
Sbjct: 419 DPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMIHKVYENEEIKNIYTA 478

Query: 481 LGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LG  +G +        +KLRYHKI+IMTDAD+DG+HI TL+LTFFFR M  LI  G++YI
Sbjct: 479 LGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIEQGYVYI 538

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
             PPLY + +G    Y  +E+  E+  +  S   +          G ++   L  
Sbjct: 539 ASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKGVEVQRYKGLGEMNPEQLWE 593



 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 691 RIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTIFSIG--RKGISMQRYKGLG 743
           R     IE+ Y+ I S     L     K+         +    +    KG+ +QRYKGLG
Sbjct: 525 RYMKELIEQGYVYIASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKGVEVQRYKGLG 584

Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           EMN  QLWETTLNP+ R L +V I +A +AD +FS LMGDEV PRREFI++N++ + +D
Sbjct: 585 EMNPEQLWETTLNPENRILKQVNIENAGEADRIFSMLMGDEVPPRREFIEKNAVYAKID 643


>gi|288929798|ref|ZP_06423641.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328899|gb|EFC67487.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 317 str. F0108]
          Length = 657

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 273/578 (47%), Positives = 375/578 (64%), Gaps = 15/578 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M +N  N ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++ E +DN+IDE++ G
Sbjct: 1   MVENQNNENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV D+GRGIP D H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCSNIEVTINEDNSITVQDDGRGIPVDEHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALSS +  ++ R+G IY+  +  G    P+ V G   +  GT   F P  
Sbjct: 120 LHGVGVSCVNALSSRMLSQVFRDGKIYQQEYETGKPLYPVKVVGET-DKRGTRQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236
            IF+   + +D +  R+REL++LN+ V+I+L       + + R  T   K G++ FV Y+
Sbjct: 179 SIFTTTVYRWDIIASRMRELAYLNAGVKITLTDLRPDENGKTRTETFHAKDGLKEFVRYV 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  + NI I++A+ +N  Y EN+  + NNI   +GGTHL+G R AL
Sbjct: 239 DRHRTHLFDDVIYLKTEKQNIPIEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRMAL 298

Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 TRTLKAYADNDPVISKQIEKSKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + L  +LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK  +    LPG
Sbjct: 359 SGAVQQAVGEALGYYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMSGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ ++ K+  ++
Sbjct: 419 KLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHKVFEAE 478

Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 SVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPR 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           +I  G LYI  PPLY  T    ++     E      I+
Sbjct: 539 IIQEGHLYIATPPLYLCTYKNKVREYCYNEQQRQAFID 576



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 56/71 (78%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I +QRYKGLGEMN  QLWETT++P  R L +V I +A+ AD++FS LMGD+VEPRREF
Sbjct: 586 KSIHVQRYKGLGEMNPEQLWETTMDPSKRLLKQVTIQNAADADEIFSMLMGDDVEPRREF 645

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 646 IEQNATYANID 656


>gi|88809918|ref|ZP_01125423.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805]
 gi|88786108|gb|EAR17270.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805]
          Length = 655

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 288/661 (43%), Positives = 402/661 (60%), Gaps = 20/661 (3%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  +  ++Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L G
Sbjct: 1   MSEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I V L  DGS  ++DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGG
Sbjct: 60  HCTEIQVVLGEDGSACITDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEVTFL 176
           LHGVGVSVVNALS W+ + ++R+  ++   F  G     L            TGT V F 
Sbjct: 120 LHGVGVSVVNALSEWVDVTVRRQAQVHRQRFERGAPIGSLVSEPQPAEEEGRTGTSVRFK 179

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229
           P  +IF+V   F+Y TL  RLREL++LN  V+I   D+R         P E   FY+GGI
Sbjct: 180 PDIEIFTVGIVFDYATLSARLRELAYLNGGVRIVFRDERENARDAEGNPHEEIYFYEGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V+Y++  K  L    I +   +D +S++ A++W  D Y +++L F NNI   DGGTH
Sbjct: 240 KEYVAYMNAEKDALHPEIIYVNAEKDGVSVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR + ++ +K    K+   ++ G++ REG T+VLS+K+P+P F  QTK KL 
Sbjct: 300 IEGLKTVLTRTLNTFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S V + LS +LE +P    +I++K + A    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDSLVGESLSQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI +LITALG GI  + FD+  LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQSLITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+  Y  +E  L+  L                 G +    L
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNESELQKTLEGFGEKANYNIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                    +D   +       +  +E   I  +   +             +  L+  A 
Sbjct: 600 WET-----TMDPTTRTMKRVEIEDALEADRIFTILMGDKV-APRREFIETHSAELDMAAL 653

Query: 648 K 648
            
Sbjct: 654 D 654



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 11/157 (7%)

Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNG 711
            + D+   R  R V      ++G+ I +    +   +   + E          L  +  G
Sbjct: 499 EDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGYIYIACPPLYKVERG 558

Query: 712 DKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
                      L  T+   G K   ++QR+KGLGEM   QLWETT++P TR++ RV+I D
Sbjct: 559 KNHTYCYNESELQKTLEGFGEKANYNIQRFKGLGEMMPKQLWETTMDPTTRTMKRVEIED 618

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803
           A +AD +F+ LMGD+V PRREFI+ +S     +ALDI
Sbjct: 619 ALEADRIFTILMGDKVAPRREFIETHSAELDMAALDI 655


>gi|229083320|ref|ZP_04215682.1| DNA gyrase subunit B [Bacillus cereus Rock3-44]
 gi|228699995|gb|EEL52618.1| DNA gyrase subunit B [Bacillus cereus Rock3-44]
          Length = 640

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 286/589 (48%), Positives = 406/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVAIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTDH-TGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 KETTEYDFDTLATRMRELAFLNRNIKLTIEDKRENKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEYGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNDKELEKILSELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 135/368 (36%), Gaps = 33/368 (8%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525
             ++            G       +      K  I+ DAD +  G  +R  L      + 
Sbjct: 274 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 333

Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571
           P+    G           +     +      +++ +  ++   ++         +  +++
Sbjct: 334 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKK 393

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                  K  +  + L   + D    D  I + Y     +    A      + ++   + 
Sbjct: 394 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 453

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR-------GVQEQFVLE 678
             + +    RL+ I    E     +        + DI   R  +        V    +  
Sbjct: 454 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRT 513

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736
               F +    + I    I       L  +  G KI+       L+ I S    +    +
Sbjct: 514 LLLTFFYRYMRQIIEYGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKILSELPAQPKPGI 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+
Sbjct: 573 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 632

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 633 KYVKNLDI 640


>gi|153812024|ref|ZP_01964692.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174]
 gi|149831923|gb|EDM87009.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174]
          Length = 641

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 295/586 (50%), Positives = 389/586 (66%), Gaps = 4/586 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +N+ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+   I 
Sbjct: 4   ENTEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGFCTEIQ 62

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+N D S TV DNGRGIP  ++ + GI A EV+ T LHAGGKF    YKVSGGLHGVG 
Sbjct: 63  VTINPDNSITVVDNGRGIPVGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGA 122

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184
           SVVNALS WL++ I REG  Y+  +  G    PL   G     +TGT+VTFLP  +IF  
Sbjct: 123 SVVNALSEWLEVTICREGKKYQQRYERGHTMYPLKEIGVCDPEETGTKVTFLPDKEIFEE 182

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             ++YD L+ RLRE++FL   ++I L D R  + +E    Y+GGI  FV+YL+R K+ L 
Sbjct: 183 TIYDYDILKQRLREMAFLTKGLRIVLKDTREDQEKEKAFHYEGGIREFVTYLNRSKEALY 242

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I  +G +D + +++AM+ ND Y EN   F NNI   +GGTH+ G R+ALT+    Y 
Sbjct: 243 PEVIYCEGEKDGVMVEVAMQHNDSYTENSYGFVNNINTPEGGTHIVGFRNALTKTFNDYA 302

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K  + ++ GDD REG T+++S+K+ +P+F  QTK+KL +SE R  V+  V+  L
Sbjct: 303 RKNKLLKDSEPNLSGDDIREGLTAIVSVKIEEPQFEGQTKQKLGNSEARGAVDFVVSKQL 362

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +LE++P  AK  V+K + A   R+AAR+ARDLTRRK  LD  SLPGKLADCS+++P+ 
Sbjct: 363 EIFLEQNPTVAKATVEKSVLAQRAREAARKARDLTRRKSALDGMSLPGKLADCSDKNPEN 422

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E+++VEGDSAGGSAK  R+R  QAILPLRGKILNVE+AR D++ S+ EI  +ITA GTG
Sbjct: 423 CEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDRIYSNAEIKAMITAFGTG 482

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I +D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY +
Sbjct: 483 IHED-FDITKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKV 541

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            + K + Y  D+  L   L                 G +    L  
Sbjct: 542 EKNKKVWYAYDDAELNSILEQIGRDNNNKIQRYKGLGEMDAEQLWE 587



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y       L  
Sbjct: 481 TGIHEDFDITKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYK 540

Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        L   +  IGR   + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 541 VEKNKKVWYAYDDAELNSILEQIGRDNNNKIQRYKGLGEMDAEQLWETTMDPEKRILLRV 600

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + +++  + D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 601 TMDESATSEIDLTFTTLMGDKVEPRREFIEENARFVENLDI 641


>gi|75761791|ref|ZP_00741726.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490724|gb|EAO54005.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 645

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 286/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 9   KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 67

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 68  EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 127

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 128 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 186

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 187 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 245

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 246 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 305

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 306 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 365

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 366 EAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 425

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 426 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 485

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 486 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 544

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 545 FKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 593



 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/469 (19%), Positives = 156/469 (33%), Gaps = 51/469 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 193 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 252

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 253 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 299

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 300 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 359

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 360 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 417

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 418 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 477

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 478 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 537

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 538 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 596

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 597 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 645


>gi|253581066|ref|ZP_04858326.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847602|gb|EES75572.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 641

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 299/586 (51%), Positives = 394/586 (67%), Gaps = 4/586 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +N+ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+   I 
Sbjct: 4   ENTEYGADQIQILEGLEAVRKRPGMYIGSTS-GRGLHHLVYEIVDNAVDEALAGFCTEIQ 62

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V +N D S TV DNGRGIP  ++ + GI A EV+ T LHAGGKF    YKVSGGLHGVG 
Sbjct: 63  VVINPDNSITVVDNGRGIPVGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGA 122

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184
           SVVNALS+WL++RI  EG IY+  +  G    PL V G    + TGT V FLP  +IF  
Sbjct: 123 SVVNALSTWLEVRIYHEGKIYQQRYERGKTMYPLKVVGDCQPDKTGTTVVFLPDKEIFEE 182

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             ++YD L+ RLRE++FL   ++ISL D R    RE    Y+GGI  FVSYL+R K+ L 
Sbjct: 183 TVYDYDILKQRLREMAFLTKGLKISLKDTREGMEREKVFHYEGGIREFVSYLNRSKEALY 242

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I  +G ++ +S+++AM+ ND Y EN   F NNI   +GGTH+ G R+ALT+    Y 
Sbjct: 243 PEIIYCEGQQNGVSVEVAMQHNDSYTENCYGFVNNINTPEGGTHIVGFRNALTKTFNDYA 302

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K  + ++ GDD REG T+++S+K+ +P+F  QTK+KL +SE R  V+S V+  L
Sbjct: 303 RKNKLLKDSEPNLSGDDIREGLTAIVSVKIENPQFEGQTKQKLGNSEARGAVDSVVSKQL 362

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +LE++P  AK  V+K + A   R+AAR+ARDLTRRK  LD  SLPGKLADCS+++P+ 
Sbjct: 363 EIFLEQNPTVAKTTVEKSVLAQRAREAARKARDLTRRKSALDNMSLPGKLADCSDKNPEN 422

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E+++VEGDSAGGSAK  R+R  QAILPLRGKILNVE+AR DK+ ++ EI  +ITA GTG
Sbjct: 423 CEIYIVEGDSAGGSAKTARNRVTQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTG 482

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY +
Sbjct: 483 IHED-FDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKV 541

Query: 545 TRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
            + K + Y  D++ L   L                 G +  + L  
Sbjct: 542 EKNKKVWYAYDDDELNQILTEIGRDGNNKIQRYKGLGEMDADQLWE 587



 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y       L  
Sbjct: 481 TGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYK 540

Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        L   +  IGR G + +QRYKGLGEM+A QLWETT++P+ R LL+V
Sbjct: 541 VEKNKKVWYAYDDDELNQILTEIGRDGNNKIQRYKGLGEMDADQLWETTMDPEKRILLKV 600

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + +A+  + D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 601 TMDEAATSEIDLTFTTLMGDKVEPRREFIEENARFVKNLDI 641


>gi|294674979|ref|YP_003575595.1| DNA gyrase subunit B [Prevotella ruminicola 23]
 gi|294471706|gb|ADE81095.1| DNA gyrase, B subunit [Prevotella ruminicola 23]
          Length = 658

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 265/581 (45%), Positives = 377/581 (64%), Gaps = 17/581 (2%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M++    Q  +Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++ E +DN+IDE++ 
Sbjct: 1   MTEEQLNQEQNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT+N D S TV DNGRGIP D H++   SA EV+MT LHAGGKF++ SYKVSG
Sbjct: 60  GYCTHIEVTINEDNSITVQDNGRGIPVDEHEKMHKSALEVVMTVLHAGGKFDKGSYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS+ +  ++ R G+IY+  +  G     + + G   + TGT   F P 
Sbjct: 120 GLHGVGVSCVNALSTHMMSQVFRNGHIYQQEYEKGKPLYDVKIVGDT-DKTGTRQQFWPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
             IF+  ++ YD +  R+REL++LN+ + I+L D R  E     +      K G++ FV 
Sbjct: 179 GSIFTTTEYKYDIIAKRMRELAYLNAGITITLTDLRPDEEGNLRQPEVFHAKEGLKEFVR 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y+DRH+  ++  PI ++  +D + I++A+ +N  Y EN+  + NNI   +GGTHL+G R 
Sbjct: 239 YVDRHRTSIIGDPICLKTEKDGVPIEVALLYNSDYSENIHSYVNNINTIEGGTHLTGFRI 298

Query: 295 ALTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           AL R +  Y ++        +K K  V  DD REG T+++S+K+ +P+F  QTK KL +S
Sbjct: 299 ALARTLKKYADEDDQLRKQIEKAKIEVAQDDFREGLTAIISVKVAEPQFEGQTKTKLGNS 358

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV   V+  V + ++ +LEE+P EA  I +KV+ A+  R AAR+AR+  +RK  +    L
Sbjct: 359 EVNGAVQKAVGEAMTNYLEENPKEAHTICEKVILAATARIAARKARESVQRKNPMTGGGL 418

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS +DPK+ E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ ++ ++  
Sbjct: 419 PGKLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKVQWHRVFE 478

Query: 471 SQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           ++ +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R M
Sbjct: 479 AESVMNIIQSIGVRFGVDGEDSKDANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFM 538

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           P +I  G LYI  PPLY  T  K+ +Y   E+  + ++   
Sbjct: 539 PQVIQGGHLYIATPPLYKCTYKKTSEYCYTEQQRQAFIDKY 579



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 58/71 (81%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG+  QRYKGLGEMN  QLWETT+NP+ R L +V I +A++AD++FS LMGD+VEPRREF
Sbjct: 587 KGLHTQRYKGLGEMNPEQLWETTMNPENRLLKQVTIENAAEADEIFSMLMGDDVEPRREF 646

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 647 IEKNATYANID 657


>gi|23097461|ref|NP_690927.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831]
 gi|22775684|dbj|BAC11962.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831]
          Length = 641

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 300/592 (50%), Positives = 415/592 (70%), Gaps = 8/592 (1%)

Query: 1   MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M D   +N  Y AD IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L G
Sbjct: 3   MEDKITENQEYGADQIQVLEGLEAVRKRPGMYIGSTS-EKGLHHLVWEIVDNSIDEALAG 61

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I V +  D S TV DNGRGIP D+ ++ G  A EVIMT LHAGGKF    YKVSGG
Sbjct: 62  YCDHIQVVVEEDNSITVKDNGRGIPVDIQQKTGRPALEVIMTVLHAGGKFGGGGYKVSGG 121

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALSS L++ + R+G ++ +SF  G+ D  + V G   + TGT   F P +
Sbjct: 122 LHGVGASVVNALSSELEVYVHRDGKVHFLSFKKGVPDGEIKVIGDT-DITGTVTHFRPDT 180

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    +N+DTL+ RLREL+FLN  ++IS+ DKR+ +  ++T  Y+GGI ++V ++++
Sbjct: 181 EIFTETTEYNFDTLEQRLRELAFLNKGLKISIEDKRT-DREQVTYHYEGGISSYVEFINK 239

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+ L   P   +G    IS+++A+++NDG+  N+  F NNI   +GG+H  G RS LTR
Sbjct: 240 NKEVLH-EPFFAEGEDQGISVEVAIQYNDGFASNLYSFANNIHTYEGGSHEVGFRSGLTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y +K+   K    ++ GDD REG T+++SIK PDP+F  QTK KL +SEVR++ + 
Sbjct: 299 IINDYAKKNGLIKDGDSNLSGDDVREGMTTIVSIKHPDPQFEGQTKTKLGNSEVRAITDG 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++  S +L E+P  AKIIV+K L AS  R AA++AR+LTRRK  L+I++LPGKLADCS
Sbjct: 359 VFSEAFSKFLYENPSTAKIIVEKGLMASRARLAAKKARELTRRKSNLEISNLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RD   SEL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++LS+ E+  +I
Sbjct: 419 SRDAAISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILSNNEVRAMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG+G+G++ FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 479 TALGSGVGEE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRPLIEQGYIYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY + +GK++ Y  +++ L+  L     + +         G ++ + L +
Sbjct: 538 PPLYQVKQGKTVNYAYNDKELDRILNEIPKAPKPNIQRYKGLGEMNADQLWD 589



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 21/183 (11%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGS 687
             RL+ I   +E          G     DI   R  + V      ++G+ I +    F  
Sbjct: 462 KARLDRILSNNEVRAMITALGSGVGEEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 521

Query: 688 KYKRIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKG 741
           +Y R     IE+ Y+      L  +  G  +        LD I +   K    ++QRYKG
Sbjct: 522 RYMRPL---IEQGYIYIAQPPLYQVKQGKTVNYAYNDKELDRILNEIPKAPKPNIQRYKG 578

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800
           LGEMNA QLW+TT++PDTR+LL+V+++DA  AD +F  LMGD+VEPRR FI+EN+     
Sbjct: 579 LGEMNADQLWDTTMDPDTRTLLQVELSDAIDADQVFDMLMGDKVEPRRIFIEENAQYVKN 638

Query: 801 LDI 803
           LDI
Sbjct: 639 LDI 641


>gi|255527581|ref|ZP_05394445.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
 gi|296186779|ref|ZP_06855180.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
 gi|255508714|gb|EET85090.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
 gi|296048493|gb|EFG87926.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
          Length = 637

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 301/640 (47%), Positives = 430/640 (67%), Gaps = 6/640 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +   YD + IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+
Sbjct: 1   MSEQ-KKQVYDENQIQVLEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNSIDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV+D+GRG+P  +H +      EVIMT LHAGGKF    YKVSGGL
Sbjct: 59  CKNIEVFIHKDNSITVTDDGRGMPVGMHPKMKKPTVEVIMTVLHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS   ++ +KREG+I++ +F  G +   L + G +    GT++ F P ++
Sbjct: 119 HGVGASVVNALSELCEVEVKREGHIWKQAFERGKVKTGLEIVGDSE-GHGTKIHFKPDAE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   D++YDTL  RLREL+FLN +++I+L D+R  +       Y+GGI++FVSYL+R+K
Sbjct: 178 IFEEVDYDYDTLAQRLRELAFLNRNIRINLSDERIDKL--EVFHYEGGIKSFVSYLNRNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + + + PI ++G++ + S+++++++NDGY EN+  F NNI   +GGTHL+G +SALTR  
Sbjct: 236 QVINKEPIYVEGNKQDCSVEISIQYNDGYTENIFSFANNIDTVEGGTHLAGFKSALTRAF 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K    K++ +++ G+D REG T+V+S+K+ DP+F  QTK KL +SEVR +V+  V
Sbjct: 296 NDYAKKFGILKENDKNLSGEDIREGLTAVISVKLIDPQFEGQTKTKLGNSEVRGIVDGIV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +G+S++L+E+P  AK I+ K L AS  R+AAR+AR+LTRRK +L+  SLPGKLADCS +
Sbjct: 356 GEGVSSFLQENPQVAKSILDKSLMASRAREAARKARELTRRKSILENTSLPGKLADCSSK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DPK+ E++LVEGDSAGGSAKQGR+R  QAILPLRGKI+NVE+ R DK+L  +EI  +ITA
Sbjct: 416 DPKECEIYLVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGYEEIRAMITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG+D FD+ K+RY +IIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PP
Sbjct: 476 FGGGIGKD-FDVEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMKELVDQGHVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY + +GK   Y   ++ LE  L +    +        KG+   +  + +       +++
Sbjct: 535 LYKVAKGKKEHYAYSDKELEKLLEDVGGKDNNTNIQRYKGLGEMDATQLWDTTMNPDERV 594

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           +            E   I      E  +E     A K+ N
Sbjct: 595 LLQVTVEDAMAADEIFTILMGDKVEPRREFIQENAKKVIN 634



 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K +       D ++      V    +      F +    + +    +      +  +   
Sbjct: 482 KDFDVEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMKELVDQGHVYIAQPPLYKVAKG 541

Query: 711 GDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
             +        L   +  +G K    ++QRYKGLGEM+A+QLW+TT+NPD R LL+V + 
Sbjct: 542 KKEHYAYSDKELEKLLEDVGGKDNNTNIQRYKGLGEMDATQLWDTTMNPDERVLLQVTVE 601

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           DA  AD++F+ LMGD+VEPRREFIQEN+     LDI
Sbjct: 602 DAMAADEIFTILMGDKVEPRREFIQENAKKVINLDI 637


>gi|300781943|ref|YP_003762234.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
 gi|299791457|gb|ADJ41832.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
          Length = 655

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 275/659 (41%), Positives = 388/659 (58%), Gaps = 20/659 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N     Y+A SI +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+
Sbjct: 1   MTEN--KHEYNASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + VTL  DG   V D+GRGIP D+H +E     EV++T LHAGGKF+  SY VSGGL
Sbjct: 58  ATKVEVTLLADGGVRVVDDGRGIPVDMHPKEQKPTLEVVLTVLHAGGKFDSDSYAVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L   +K  G  +   + + I   PL   G A  +TGT +TF    D
Sbjct: 118 HGVGVSVVNALSKKLLAEVKYGGRSWRQEYTDQIP-GPLEDLGPAS-ETGTTITFWADGD 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-------------ITMFYKG 227
           IF    +N++T+  RL+E++FLN  + +SL D+R  +                 T  Y G
Sbjct: 176 IFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEEAEADAEGKVARVKEKTYCYPG 235

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+E FV +++  K P+  S I  +     + +++AM+WN+G+  +V  F N I   +GGT
Sbjct: 236 GLEDFVKHINGSKDPIHSSVISFEAKGTGLEVEVAMQWNNGFTPSVYTFANTINTHEGGT 295

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALTR + +Y       K+   ++ GDD REG  +++SIK+ +P+F  QTK KL
Sbjct: 296 HEEGFRAALTRVVNTYARDKKLLKEKDTNLTGDDVREGLAAIVSIKLSEPQFEGQTKTKL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  R AAR+ARDL RRKG LDI
Sbjct: 356 GNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQARMAARKARDLVRRKGALDI 415

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKL DC    P++ EL++VEGDSAGGSAK+GR    QAILP+RGKI+NVE+AR D+
Sbjct: 416 GGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARIDR 475

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L + E+ +LITALGTGI  D FD+ KLRYHKI++M DADVDG HI TLLLT  FR M  
Sbjct: 476 VLKNTEVQSLITALGTGI-HDEFDLEKLRYHKIVLMADADVDGQHITTLLLTLLFRFMTP 534

Query: 528 LIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           LI +G +++ +PPLY I   ++  +Y   +   +  +     + +     D+        
Sbjct: 535 LIEHGHVFLSRPPLYKIKWPRAEPEYAYSDRERDAVIQAGVEAGKRLPKDDAIQRYKGLG 594

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             N  +                      QA          D E   S  ++ A  + F+
Sbjct: 595 EMNAEELWETTMDPANRLLGQVTLDDAAQADELFSVLMGEDVEARRSFITRNAKDVRFL 653



 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA +LWETT++P  R L +V + DA+QAD+LFS LMG++VE RR FI  N
Sbjct: 587 IQRYKGLGEMNAEELWETTMDPANRLLGQVTLDDAAQADELFSVLMGEDVEARRSFITRN 646

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 647 AKDVRFLDV 655


>gi|260437351|ref|ZP_05791167.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810263|gb|EFF69468.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876]
          Length = 641

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/594 (43%), Positives = 365/594 (61%), Gaps = 9/594 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  + N+ YDA SI IL+GL+AV+KRP MYIG      GL+H+IYE+ DN++DE L GY
Sbjct: 1   MATKV-NNVYDASSISILEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIADNSVDEHLAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VTLN DG+ T++DNGRGIPT +H + GI A EV+ T LHAGGKF    YK+SGGL
Sbjct: 59  CDTIYVTLNNDGTATITDNGRGIPTGIHPKAGIPAVEVVFTVLHAGGKFGDGGYKISGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++RIK+ G +YE  +  G     L   G+   NDTGT VTFLP +
Sbjct: 119 HGVGASVVNALSEWLEVRIKQGGIVYEQRYERGKAVYKLRECGTCRKNDTGTSVTFLPDN 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF   +F  +++++RL E ++LN  + I   + R  E +++T   + GI A+V  L+ +
Sbjct: 179 TIFEKTEFKAESIENRLHETAYLNPGLTIVFENARKGEEKKVTFHEEEGITAYVKALNEN 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ +       +GSRD I ++ A ++ D + E +L F NNI   +GGTHL+G ++  T  
Sbjct: 239 KEAVH-DVAYYKGSRDGIEVECAFQYVDEFQEQILGFCNNIYTAEGGTHLTGFKTQFTTV 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  +    K+   +  G D R G T+++++K P+PRF  QTK KL + +   VV   
Sbjct: 298 INKYARELGILKEKDVNFTGSDVRNGMTAIVAVKHPEPRFEGQTKTKLDNQDAGKVVADI 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
               L  + + +    K ++     A+ +R    +A+     K         GKLA+C  
Sbjct: 358 TAAELVRFFDRNLETLKSVIACAEKAAKIRKQEEKAKTNLLTKQKF-SCDTNGKLANCES 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R+P++ E+F+VEGDSAGGSAK  R+R+ QAILP+RGKILNVE+A  DK+L++ EI T+IT
Sbjct: 417 RNPEECEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKASMDKVLANAEIKTMIT 476

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           A G G  +   + FDI+KLRY+KII MTDADVDGAHI TLLLTFF+R MP LI  G +Y+
Sbjct: 477 AFGCGFSEGYGNDFDISKLRYNKIIFMTDADVDGAHIDTLLLTFFYRFMPDLIREGHIYL 536

Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             PPLY  + +    +Y+ D+++LE Y      S          G +  + L  
Sbjct: 537 ATPPLYKVVPKKGQGRYLYDDKALEKYRKEHEGSSFTLQRYKGLGEMDADQLWE 590



 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 53/69 (76%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTLNP+TR L +++I DA  A D+ S LMG +V PRREFI  
Sbjct: 573 TLQRYKGLGEMDADQLWETTLNPETRILKQIEIEDAKMASDITSMLMGTDVPPRREFIHT 632

Query: 795 NSLPSALDI 803
           ++  + LDI
Sbjct: 633 HAHDAELDI 641


>gi|325954875|ref|YP_004238535.1| DNA gyrase subunit beta [Weeksella virosa DSM 16922]
 gi|323437493|gb|ADX67957.1| DNA gyrase, B subunit [Weeksella virosa DSM 16922]
          Length = 671

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 283/596 (47%), Positives = 406/596 (68%), Gaps = 12/596 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           ++  ++Y AD+IQ ++G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L G+ D 
Sbjct: 27  SMSQNTYTADNIQAIEGMEHVRLRPSMYIGDV-GTRGLHHLVYEVVDNSIDEALAGFCDT 85

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I+V +    S +VSDNGRGIP D+HK+EG SA EV+MT++ AGGKF++ +YKVSGGLHGV
Sbjct: 86  ISVKILEGNSISVSDNGRGIPVDIHKKEGKSALEVVMTKIGAGGKFDKDTYKVSGGLHGV 145

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVS VNALS+ L   + + G  Y   +  G     +   G   + +GT VTF P + IF+
Sbjct: 146 GVSCVNALSNHLTAEVFKNGKHYIQEYEKGKPLYDVKQVGDT-DKSGTTVTFTPDNTIFN 204

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRH 239
             ++N++TL +RLRELS+LN  + I+L D+R      EP        GG++ FV ++D +
Sbjct: 205 ELEYNFNTLANRLRELSYLNKGITITLTDERVKDEKGEPLLEVFHSDGGLKEFVEFIDGN 264

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++ +M + I ++G RD I +++AMR+N  Y+EN+  + NNI   +GGTHL+G R ALTR 
Sbjct: 265 REAIMDNVICMEGERDGIPVEVAMRYNTSYNENLHSYVNNINTHEGGTHLAGFRRALTRT 324

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  Y +++F   K+K  ++GDD REG T+++S+K+ +P+F  QTK KL +SEV   V+  
Sbjct: 325 LKKYADENFNLTKEKVEIVGDDFREGLTAIISVKVMEPQFEGQTKTKLGNSEVSGAVDKI 384

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L+ +LEE+P+EAKIIV KV+ A+  R AA++AR++ +RK  +  + LPGKLADCS 
Sbjct: 385 VSEMLTNFLEENPIEAKIIVDKVILAAKARQAAKKAREMVQRKNPMGGSGLPGKLADCSS 444

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R+P++SE+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+L ++EI  + T
Sbjct: 445 RNPEESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKAMAHKVLDNEEIKNIYT 504

Query: 480 ALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           ALG  IG +      +I+KLRYHK++IMTDADVDG+HI TL+LTFFFR M  LI NG +Y
Sbjct: 505 ALGVSIGTEEDSKALNISKLRYHKVVIMTDADVDGSHIATLILTFFFRYMKELIENGHIY 564

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           I  PPLY + +G   +Y   EE  E  +   +   +          G ++   L +
Sbjct: 565 IATPPLYLVKKGNKAEYAWGEEEREALVEKLAPDGKGVTIQRYKGLGEMNAEQLWD 620



 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 12/209 (5%)

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                          +E+A+   V + E  + I  +L   +        E+  K+ + S 
Sbjct: 470 RHFQAILPLRGKILNVEKAMAHKVLDNEEIKNIYTALGVSIG------TEEDSKALNISK 523

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
                +V      V    +      F F    + I +  I       L L+  G+K +  
Sbjct: 524 LRYHKVVIMTDADVDGSHIATLILTFFFRYMKELIENGHIY-IATPPLYLVKKGNKAEYA 582

Query: 718 GPCS----LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
                   L++ +   G KG+++QRYKGLGEMNA QLW+TTLNP  R++ +V I +A++A
Sbjct: 583 WGEEEREALVEKLAPDG-KGVTIQRYKGLGEMNAEQLWDTTLNPQNRTMRKVTIENAAEA 641

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALD 802
           D +FS LMGD+V+PRREFI++N+  + +D
Sbjct: 642 DRVFSMLMGDDVQPRREFIEKNAEYAKID 670


>gi|52145204|ref|YP_081624.1| DNA gyrase subunit B [Bacillus cereus E33L]
 gi|229094604|ref|ZP_04225671.1| DNA gyrase subunit B [Bacillus cereus Rock3-42]
 gi|229159054|ref|ZP_04287110.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342]
 gi|300118805|ref|ZP_07056525.1| DNA gyrase subunit B [Bacillus cereus SJ1]
 gi|51978673|gb|AAU20223.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)
           [Bacillus cereus E33L]
 gi|228624473|gb|EEK81244.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342]
 gi|228688851|gb|EEL42682.1| DNA gyrase subunit B [Bacillus cereus Rock3-42]
 gi|298723773|gb|EFI64495.1| DNA gyrase subunit B [Bacillus cereus SJ1]
          Length = 640

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 287/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 248 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 294

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +I+        +  +++       K  +  + L   + 
Sbjct: 355 TESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 533

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 534 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|229176169|ref|ZP_04303661.1| DNA gyrase subunit B [Bacillus cereus MM3]
 gi|228607328|gb|EEK64658.1| DNA gyrase subunit B [Bacillus cereus MM3]
          Length = 640

 Score =  592 bits (1526), Expect = e-166,   Method: Composition-based stats.
 Identities = 286/589 (48%), Positives = 404/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             ++ +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMEENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 QETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 159/474 (33%), Gaps = 47/474 (9%)

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERD 421
                + E    A  + +       ++      R+  ++K       +   +      + 
Sbjct: 181 FQETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQ 240

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P   E   VEG S  G   +   + N+                     ++          
Sbjct: 241 PIHEEPVYVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTH 287

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI--- 536
             G       +      K  I+ DAD +  G  +R  L      + P+    G       
Sbjct: 288 EVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLG 347

Query: 537 ---IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKN 585
               +     +      +++ +  ++   +I+        +  +++       K  +  +
Sbjct: 348 NSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVS 407

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            L   + D    D  I + Y     +    A      + ++   +   + +    RL+ I
Sbjct: 408 SLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKI 467

Query: 646 AEKSEKS-------------WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI 692
               E               +         ++      V    +      F +    + I
Sbjct: 468 LSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQII 527

Query: 693 FSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQL 750
               I       L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QL
Sbjct: 528 ECGYIY-IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQL 586

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           WETT++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 587 WETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|288939795|ref|YP_003442035.1| XRE family transcriptional regulator [Allochromatium vinosum DSM
           180]
 gi|288895167|gb|ADC61003.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM
           180]
          Length = 1371

 Score =  591 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 307/520 (59%), Positives = 396/520 (76%), Gaps = 10/520 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YD+ +I++L+GLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   ++VTL
Sbjct: 2   TYDSTNIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSTVSVTL 61

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + DGS +V D+GRGIP D+H EE  SAAEVI+T LHAGGKF+  SYKVSGGLHGVGVSVV
Sbjct: 62  HADGSVSVVDDGRGIPVDIHAEENRSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVV 121

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L LRI+R G+++E  +  G    PL V G    +TGTE+ F PS +IFS  DF+
Sbjct: 122 NALSERLYLRIRRGGHLHEQEYRLGEPVYPLRVIGDTE-ETGTEIRFYPSGEIFSNLDFH 180

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V+I+L D+ S   R     Y+GGI AFV  L+++K+P+  + +
Sbjct: 181 YDILAKRLRELSFLNSGVRIALSDEASG--RHDVFEYEGGIRAFVENLNQNKEPIHPTVV 238

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                R +I ++LA++WN+ Y E + C+TN IPQ+DGGTHL+GLR+ALTR +  Y+E+  
Sbjct: 239 YFSTERQDIGVELAIQWNNSYQETIFCYTNTIPQRDGGTHLAGLRAALTRTLNGYIEREG 298

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K  K   IGDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV++VVES V + L  +L
Sbjct: 299 LDKNQKIRPIGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKAVVESLVVEHLGTFL 358

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE P EAK+I  K+L+A+  R+AAR+AR++TRRKGVLDIA LPGKLADC E+DP KSEL+
Sbjct: 359 EEQPNEAKVIAGKMLEAARAREAARKAREMTRRKGVLDIAGLPGKLADCQEKDPAKSELY 418

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKML+S E+GTLITALG GIG++
Sbjct: 419 LVEGDSAGGSAKQGRDRAFQAILPLKGKILNVEKARFDKMLASAEVGTLITALGCGIGRE 478

Query: 489 SFDINKLRYHKIIIMT-DADVD------GAHIRTLLLTFF 521
            ++ + LRYH++IIM+ DA+        G H+R   +  F
Sbjct: 479 EYNPDNLRYHRVIIMSVDAEEHVFVRDPGGHVRMTRIGDF 518



 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 161/309 (52%), Gaps = 10/309 (3%)

Query: 504  TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
            TDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY + +GK   Y+ DE +L   +
Sbjct: 1064 TDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKLKKGKQEDYLLDETALNGAM 1123

Query: 564  INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            +  +L             ++   L     D      +++     +D TF+++ V +   +
Sbjct: 1124 LQSALDGAELHVNAEAPALANTALEALAKDYQVTVNIVRRLASRYDATFLDELVRTPPVD 1183

Query: 624  CE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFV 676
                SD E        +  RLN     S +     S      +  + + R+  G+ E  +
Sbjct: 1184 AALLSDGERLADWCRIMEARLNAAESVSLRYVLRLSEPTEGQSRGLELIRLIHGIPETRI 1243

Query: 677  LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGIS 735
            +      +      R F  ++ +  +   + +  G+KIK I      +  + +  ++G S
Sbjct: 1244 IPLDFFNTTDYARLREFGLKL-DGLIQPGAFVRRGEKIKEIGDLGEAIRWLLAEAQRGYS 1302

Query: 736  MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
            +QRYKGLGEMN  QLWETT+NP+ R LL+V I DA  AD +F+ LMGD+VEPRREFI+ N
Sbjct: 1303 IQRYKGLGEMNPEQLWETTMNPEMRRLLKVTIEDAVAADQIFTTLMGDQVEPRREFIERN 1362

Query: 796  SLPS-ALDI 803
            +L    LDI
Sbjct: 1363 ALNVGNLDI 1371


>gi|72388581|gb|AAZ67934.1| DNA gyrase subunit B [Psychrobacter urativorans]
          Length = 741

 Score =  591 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 328/712 (46%), Positives = 450/712 (63%), Gaps = 34/712 (4%)

Query: 48  VLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
           V+DN+IDE+L  Y D I + ++ D S +VSDNGRG+P D+H EEG+SAA+VIMT LHAGG
Sbjct: 1   VVDNSIDEALALYCDQIDIIIHEDLSVSVSDNGRGVPVDIHPEEGVSAAQVIMTVLHAGG 60

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L++ I REG  Y  ++ +G+ D  +     A +
Sbjct: 61  KFDDNSYKVSGGLHGVGVSVVNALSKTLEMNIWREGYHYNQTYTDGVPDGDIQQ-MEATD 119

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++ F PS+D+F+   F YD L  RLRELSFLNS V+I L D+R  +  E    +KG
Sbjct: 120 RTGTQIRFYPSTDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKG 177

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+  FVSY++  K  + +         D IS+++A++W D Y+E VLCFTNNIPQ+DGGT
Sbjct: 178 GLSEFVSYINAGKDNVNEIFHFNSEQDDGISVEVALQWTDTYNEKVLCFTNNIPQRDGGT 237

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HLSG RSALTR + +Y+++    KK+K    GDD REG T+++S+K+PDP+FSSQTK+KL
Sbjct: 238 HLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKL 297

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VES ++D  + +L+E+P  +K I  K++DA+  RDAAR+AR++TRRK  LDI
Sbjct: 298 VSSEVKSAVESAMHDKFNDYLQENPGASKAIAGKIIDAARARDAARKAREMTRRKTTLDI 357

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDK
Sbjct: 358 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDK 417

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           MLSS E+G LITALG GIG D ++ +K RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P 
Sbjct: 418 MLSSAEVGNLITALGCGIGPDEYNPDKARYHKIIIMTDADVDGSHIRTLLLTFFFRQTPE 477

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G++YI +PPLY + +G+   Y+KD+E+L+ YL++ ++             I+   L
Sbjct: 478 LIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTRLHISLDAPAITGQAL 537

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
              ++D  +   +       +    ++    +   + +   ++  S      + L    +
Sbjct: 538 ETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDMTYDL--SAMQAWKDSLQLQLD 595

Query: 648 KSEKSWHGSINNSDIL--VKRIARGVQEQFV-------------------LEGSSIFSFG 686
           +     +  I   DI   V      V    +                   + G SI S  
Sbjct: 596 RFGSDLNPEIELVDIHAPVSATMDAVTADLLGMKPKAPAQPALIGDSEASIVGESISSTE 655

Query: 687 SK--------YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           +            ++ +++  NYL   S I +G+  K+    S  +T+    
Sbjct: 656 ALSKKPQWLPRITVYVHQLAHNYLLDASFINSGEYSKLLRLSSEWNTLLEES 707


>gi|210634747|ref|ZP_03298275.1| hypothetical protein COLSTE_02202 [Collinsella stercoris DSM 13279]
 gi|210158687|gb|EEA89658.1| hypothetical protein COLSTE_02202 [Collinsella stercoris DSM 13279]
          Length = 674

 Score =  591 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 280/678 (41%), Positives = 398/678 (58%), Gaps = 21/678 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    + Y  + I++L+GL+AV+ RP MYIG T   +GLHH+++E++DN++DE++ G+
Sbjct: 1   MAN---ENEYGGNEIKVLEGLEAVRVRPGMYIGSTSS-TGLHHLVWEIVDNSVDEAMAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV DNGRGIP D H  + I   EV+MT LHAGGKF+  +YKVSGGL
Sbjct: 57  CTKIEVTVHPDNSITVVDNGRGIPVDEHPVKKIPTLEVVMTILHAGGKFDNSAYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + ++++R+G+IYEM F  G     +   G++     T  TF P  +
Sbjct: 117 HGVGVSVVNALSKKMNVQVRRDGHIYEMEFSRGKTTQKMREIGTSETTG-TTTTFWPDEE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++YD L+ RL++ +FLN +++I L D+R+ +P      Y GGI  FV +L+  K
Sbjct: 176 IFETTVYDYDILRTRLQQTAFLNKNLKIVLKDERTADPLVEEFCYAGGIVDFVKFLNEGK 235

Query: 241 KPL--MQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
                ++ PI + G             +++A++WN  Y ENV+ F N+I   +GG H+ G
Sbjct: 236 TVPEGLKHPIYLSGESEPGAPVEKIGEVEVAIQWNTSYSENVVSFANDIRTIEGGMHMEG 295

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  I  Y  K+   K+ + ++ GDD REG T+V+S+K+ DP+F  QTK KL SS 
Sbjct: 296 FRAALTSVINDYARKNNILKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGSSF 355

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +R++    V++GL+ +LEEHP +A+ I+KK   AS  R+AAR+AR+ TRRK +L+ ASLP
Sbjct: 356 MRTLTRKVVSEGLADFLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETASLP 415

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS RD + +ELF+VEGDSAGGSAK GR R+ QAILPLRGKILNVER    +  SS
Sbjct: 416 GKLADCSVRDAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSS 475

Query: 472 QEIGTLITALGTGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + I +LITA+G G+         FDI K RYHKIIIMTDADVDGAHIR LLLTFF++ M 
Sbjct: 476 ETIQSLITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMR 535

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G++Y+  PP++GI     + YV    +               L  +      +  
Sbjct: 536 PLIDAGYVYVACPPIFGIKVRNKIHYVY--PNGRQAEDEILRDSIKALGLNPDEADDEQA 593

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
                                 D   +    +           I  ++ +  A R    +
Sbjct: 594 NGKVTKKRKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAVVADRAVRELMGS 653

Query: 647 EKSEKSWHGSINNSDILV 664
           E   +  +   +  D   
Sbjct: 654 EVGYRREYIEKHAHDARF 671



 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           RKG ++QRYKGLGEM+  QL  TT++P TR L RV I DA  AD     LMG EV  RRE
Sbjct: 601 RKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAVVADRAVRELMGSEVGYRRE 660

Query: 791 FIQENSLPSA-LD 802
           +I++++  +  LD
Sbjct: 661 YIEKHAHDARFLD 673


>gi|228942642|ref|ZP_04105174.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975572|ref|ZP_04136124.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982208|ref|ZP_04142497.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407]
 gi|228777560|gb|EEM25838.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407]
 gi|228784182|gb|EEM32209.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817068|gb|EEM63161.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 642

 Score =  591 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/594 (48%), Positives = 407/594 (68%), Gaps = 9/594 (1%)

Query: 1   MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS     +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L
Sbjct: 1   MSMEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVS
Sbjct: 60  AGYCDEINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P
Sbjct: 120 GGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKP 178

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L
Sbjct: 179 DPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHL 237

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +R K+P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++AL
Sbjct: 238 NRSKQPIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTAL 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ 
Sbjct: 298 TRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTIT 357

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES  ++    +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++SLPGKLAD
Sbjct: 358 ESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLAD 417

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T
Sbjct: 418 CSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRT 477

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +ITA+GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI
Sbjct: 478 IITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYI 536

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            +PPL+ + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 AQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 590



 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 190 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 249

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 250 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 296

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 297 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 356

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +++        +  +++       K  +  + L   + 
Sbjct: 357 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 416

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 417 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 476

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 477 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 535

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 536 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 595

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 596 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 642


>gi|229164444|ref|ZP_04292372.1| DNA gyrase subunit B [Bacillus cereus R309803]
 gi|228619049|gb|EEK75947.1| DNA gyrase subunit B [Bacillus cereus R309803]
          Length = 640

 Score =  591 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 285/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 248 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 294

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 295 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +++        +  +++       K  +  + L   + 
Sbjct: 355 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 533

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 534 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|228994212|ref|ZP_04154112.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442]
 gi|228765664|gb|EEM14318.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442]
          Length = 640

 Score =  591 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 288/589 (48%), Positives = 406/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGETDH-TGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                +++DTL  R+REL+FLN ++++ + DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 KETTEYDFDTLATRMRELAFLNRNIKLIIEDKRENKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAHPKPGIQRYKGLGEMNPTQLWE 588



 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 6/200 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++   +  I       +         ++  
Sbjct: 444 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIM 501

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I       L  +  G KI+       L+ I
Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKI 560

Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +         +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+
Sbjct: 561 LAELPAHPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 620

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR FIQEN+     LDI
Sbjct: 621 VEPRRNFIQENAKYVKNLDI 640


>gi|206900988|ref|YP_002251257.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740091|gb|ACI19149.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12]
          Length = 635

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 296/642 (46%), Positives = 410/642 (63%), Gaps = 14/642 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +   Y ADSIQIL+G +AV++RP MYIGDT G  GLHH+I+E++DN+IDE + GY D I
Sbjct: 4   TKKDKYTADSIQILEGTEAVRRRPGMYIGDT-GVRGLHHLIFELVDNSIDEVMAGYCDYI 62

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DG+  V+DNGRGIP D+H +    A EV++T LHAGGKF+   YK+SGGLHGVG
Sbjct: 63  LVELKKDGAVVVADNGRGIPVDIHPQAKKPALEVVLTTLHAGGKFSNSIYKISGGLHGVG 122

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALSS L++ + R+G I+   +  G    PL V G   + TGT++ F P  +IF  
Sbjct: 123 LSVVNALSSKLEVEVMRDGKIFYQVYERGKPITPLTVKGET-DKTGTKIKFYPDPEIFET 181

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YD + +RLREL+FLN  V I L D+R+         Y+GG+  F+ YL + K+ L 
Sbjct: 182 TKFDYDIVANRLRELAFLNPKVTIELRDERTGRSN--IFKYEGGLLEFIEYLSKGKEVLH 239

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             PI ++    N+ +++ M++N GY E +L + NNI   +GGTH++G R+ALTR + ++ 
Sbjct: 240 -EPIYMEREEGNLILEIVMQYNSGYDELILSYVNNIHTIEGGTHVTGFRTALTRVVNNFA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K+++ S+ GDD REG T+++S+K+PDP+F  QTK KL ++EVR  VE  V + L
Sbjct: 299 RSWGLWKENE-SLSGDDVREGLTAIVSVKVPDPQFEGQTKTKLGNTEVRKFVEKVVEEEL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +  ++P   K+I+ K+++A   R AAR+AR+L RRK +L+   LPGKLADCSE+DP K
Sbjct: 358 TEYFSKNPDTGKLIITKIIEAYRARQAARKARELVRRKSLLESTLLPGKLADCSEKDPAK 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF-DKMLSSQEIGTLITALGT 483
            ELF+VEG+SAGGSAKQ R R  QAILPLRGKILNVE+A+   K+LSS+EI  +I +LGT
Sbjct: 418 CELFIVEGESAGGSAKQARDRRYQAILPLRGKILNVEKAQHLTKILSSEEIKAIIASLGT 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG   FD++KLRYHKIIIMTDADVDGAHIRTLLLTFF+R    LI  G++YI +PPLY 
Sbjct: 478 GIG-QDFDLSKLRYHKIIIMTDADVDGAHIRTLLLTFFYRHFRPLIEGGYIYIAQPPLYL 536

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           + +GK  +Y   EE  E+ L      E +        G +    LR        +D   +
Sbjct: 537 LRKGKEERYAYSEEEKEEILKEWGYPENVYIQRYKGLGEMDPEQLRET-----TMDPQKR 591

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                  +  +E   +  +    + +E    +  K     N 
Sbjct: 592 ILLQVTIEDALEAERLFSILMGNNVEERRNFIEQKAKFVRNL 633



 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +QRYKGLGEM+  QL ETT++P  R LL+V I DA +A+ LFS LMG+ VE RR FI+
Sbjct: 565 VYIQRYKGLGEMDPEQLRETTMDPQKRILLQVTIEDALEAERLFSILMGNNVEERRNFIE 624

Query: 794 ENSLPS-ALDI 803
           + +     LDI
Sbjct: 625 QKAKFVRNLDI 635


>gi|229099920|ref|ZP_04230843.1| DNA gyrase subunit B [Bacillus cereus Rock3-29]
 gi|229118983|ref|ZP_04248328.1| DNA gyrase subunit B [Bacillus cereus Rock1-3]
 gi|228664508|gb|EEL20004.1| DNA gyrase subunit B [Bacillus cereus Rock1-3]
 gi|228683535|gb|EEL37490.1| DNA gyrase subunit B [Bacillus cereus Rock3-29]
 gi|326937802|gb|AEA13698.1| DNA gyrase subunit B [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 640

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 285/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 248 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 294

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 295 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +++        +  +++       K  +  + L   + 
Sbjct: 355 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 533

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 534 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|260910948|ref|ZP_05917589.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634939|gb|EEX52988.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 657

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 275/608 (45%), Positives = 387/608 (63%), Gaps = 21/608 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M +N  N ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH++ E +DN+IDE++ G
Sbjct: 1   MVENQNNENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV D+GRGIP D H++   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCSSIEVTINEDNSITVQDDGRGIPVDEHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS+ +  ++ R+G IY+  +  G    P+ V G   +  GT   F P  
Sbjct: 120 LHGVGVSCVNALSTRMLSQVFRDGKIYQQEYETGKPLYPVKVVGET-DKRGTRQQFWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236
           +IF+   + +D +  R+REL++LN+ V+I+L       + + R  T   K G++ FV Y+
Sbjct: 179 NIFTTTVYRWDIIASRMRELAYLNAGVKITLTDLRPDENGKTRTETFHAKDGLKEFVRYV 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DRH+  L    I ++  + NI I++A+ +N  Y EN+  + NNI   +GGTHL+G R AL
Sbjct: 239 DRHRSHLFDDVIYLKTEKQNIPIEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRMAL 298

Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           TR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  QTK KL +SEV
Sbjct: 299 TRTLKTYADNDPVISKQIEKSKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
              V+  V + L  +LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK  +    LPG
Sbjct: 359 SGAVQQAVGEALGYYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMSGGGLPG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DPK SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ ++ K+  ++
Sbjct: 419 KLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHKVFEAE 478

Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP 
Sbjct: 479 SVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPR 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEE-----IELFCDSKGV 581
           +I  G LYI  PPLY  T    ++ Y  +E+  + ++   +  +E             G 
Sbjct: 539 IIQEGHLYIATPPLYLCTYKNKVREYCYNEQQRQAFIDKYAEGQEDNKSIHVQRYKGLGE 598

Query: 582 ISKNDLRN 589
           ++   L  
Sbjct: 599 MNPEQLWE 606



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 56/71 (78%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I +QRYKGLGEMN  QLWETT++P  R L +V I +A+ AD++FS LMGD+VEPRREF
Sbjct: 586 KSIHVQRYKGLGEMNPEQLWETTMDPSKRLLKQVTIQNAADADEIFSMLMGDDVEPRREF 645

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 646 IEQNATYANID 656


>gi|145577975|gb|ABP82706.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar entomocidus]
          Length = 632

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 406/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K+RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKVRYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/447 (19%), Positives = 152/447 (34%), Gaps = 47/447 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKV 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V +  A +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQGAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802
           F  LMGD+VEPRR FIQEN+     LD
Sbjct: 606 FEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|190710559|gb|ACE95110.1| gyrase subunit B [Bacillus thuringiensis serovar nigeriensis]
          Length = 627

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADEA 605

Query: 777 FSRLMGDEVEPRREFIQENSLP 798
           F  LMGD+VEPRR FIQEN+  
Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627


>gi|145577965|gb|ABP82701.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           mycoides]
          Length = 632

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 158/466 (33%), Gaps = 47/466 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|253573849|ref|ZP_04851191.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846326|gb|EES74332.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 636

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 296/591 (50%), Positives = 413/591 (69%), Gaps = 9/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  +   +YD  +IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE+L GY
Sbjct: 1   MS--MNEQTYDESNIQVLEGLEAVRKRPGMYIGSTS-VRGLHHLVWEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A+ I VT++ D S TV DNGRGIP  ++++   S  EV+MT LHAGGKF    YKVSGGL
Sbjct: 58  ANKIDVTVHPDNSVTVEDNGRGIPVGMNEKLQKSTLEVVMTVLHAGGKFGGGGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ + + +KR+G+IY+  +  G     + V G       T+ TF P  +
Sbjct: 118 HGVGVSVVNALSTKVIVEVKRDGHIYQQEYHRGTPQYDVRVIGDTTETG-TKTTFYPDPE 176

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    F+Y+TL  R+REL+FLN  + ISL D+R+ +    +  Y+GGI  +V +L+++
Sbjct: 177 IFTETTVFDYNTLLTRIRELAFLNKGINISLTDERTGQS--ESFHYEGGIMEYVRFLNQN 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++ L + PI ++G RD I +++++++NDGY EN+  F NNI   +GGTH SG +SALTR 
Sbjct: 235 REVLHEEPIYVEGQRDMIQVEISLQYNDGYTENIYSFANNIHTHEGGTHESGFKSALTRI 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K++  ++ GDD REG T+++S+K+P+P+F  QTK KL +SEVR +VES 
Sbjct: 295 INDYARKTGMIKENDSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESL 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + L  +++E+P  ++ I++K L AS  R+AAR+AR+LTRRK  L++++LPGKLADCS 
Sbjct: 355 FAEKLQEFMDENPSVSRRILEKSLQASRAREAARKARELTRRKSALEVSALPGKLADCSS 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L + EI  +IT
Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAIIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+D FDI+K RYHKIIIMTDADVDGAHIRTLLLTFFFR M  +I  G++YI +P
Sbjct: 475 ALGTGIGED-FDISKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRKIIEAGYVYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PL+ I R K ++Y   E+  +  +       ++        G ++   L  
Sbjct: 534 PLFKIERNKVVRYANSEKERDQIIAEFGEGAKVNVQRYKGLGEMNAEQLWE 584



 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 6/200 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +  +     + +  S      ++  
Sbjct: 440 RHFQAIL--PLRGKILNVEKARLDRILGNAEIRAIITALGTGIGEDFDISKARYHKIIIM 497

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F F    K I +  +       L  I     ++        D I
Sbjct: 498 TDADVDGAHIRTLLLTFFFRYMRKIIEAGYVY-IAQPPLFKIERNKVVRYANSEKERDQI 556

Query: 727 FSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +   +G  +++QRYKGLGEMNA QLWETT++P++R + +V I+DA QAD +F  LMGD 
Sbjct: 557 IAEFGEGAKVNVQRYKGLGEMNAEQLWETTMDPESRVMQQVSISDAIQADAIFDTLMGDN 616

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRREFI E++     LDI
Sbjct: 617 VEPRREFIHEHAKYVKNLDI 636


>gi|190710557|gb|ACE95109.1| gyrase subunit B [Bacillus thuringiensis serovar londrina]
 gi|190710571|gb|ACE95116.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
 gi|190710573|gb|ACE95117.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
 gi|190710579|gb|ACE95120.1| gyrase subunit B [Bacillus thuringiensis serovar canadensis]
 gi|190710583|gb|ACE95122.1| gyrase subunit B [Bacillus thuringiensis serovar jegathesan]
 gi|190710585|gb|ACE95123.1| gyrase subunit B [Bacillus thuringiensis serovar yosoo]
 gi|190710593|gb|ACE95127.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
 gi|190710599|gb|ACE95130.1| gyrase subunit B [Bacillus thuringiensis serovar yunnanensis]
 gi|190710603|gb|ACE95132.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
 gi|190710607|gb|ACE95134.1| gyrase subunit B [Bacillus thuringiensis serovar kumamotoensis]
 gi|190710613|gb|ACE95137.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
          Length = 627

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLP 798
           F  LMGD+VEPRR FIQEN+  
Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627


>gi|239825589|ref|YP_002948213.1| DNA gyrase subunit B [Geobacillus sp. WCH70]
 gi|239805882|gb|ACS22947.1| DNA gyrase, B subunit [Geobacillus sp. WCH70]
          Length = 640

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 296/592 (50%), Positives = 402/592 (67%), Gaps = 7/592 (1%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+ +     +YDA  IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE+L G
Sbjct: 1   MTMEQKIEHTYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+  D    ++DNGRGIP D+ ++ G  A EVIMT LHAGGKF    YKVSGG
Sbjct: 60  YCTEINVTIEKDNIIAITDNGRGIPVDIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS  L++ + R+G I+   +  G+    L V G   + TGT V F P  
Sbjct: 120 LHGVGASVVNALSEELEVYVHRDGKIHYQKYQRGVPCTDLEVIGET-DRTGTTVRFKPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    F+Y+TL  RLREL+FLN  ++I+L DKR    +     Y+GGI+++V +L+R
Sbjct: 179 EIFTETTEFDYETLATRLRELAFLNRGLKITLEDKRVENRKNE-YHYEGGIKSYVKHLNR 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI I G RD I +++A+++ND Y  N+  F NNI   +GGTH SG ++ALTR
Sbjct: 238 TREVLHEEPIYIIGERDGIYVEIALQYNDSYSSNIYSFVNNIHTHEGGTHESGFKTALTR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K +  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++
Sbjct: 298 IINDYARKHQILKDNDPNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARAVTDA 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS
Sbjct: 358 IFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCS 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+LS+ E+  +I
Sbjct: 418 SKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTGIG+D FDI K RYHKIIIMTDADVDGAHIRTLLLTFF+R M   I  G++YI +
Sbjct: 478 TALGTGIGED-FDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYVYIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY I +GK ++Y  ++  LE  L     + +         G ++   L  
Sbjct: 537 PPLYKIEQGKQVKYAYNDRQLEKILAELPENPKPTIQRYKGLGEMNPEQLWE 588



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 139/344 (40%), Gaps = 41/344 (11%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF----------------LYIIK 538
            R H+I+   D ++ G  +R  L      + PS    G                 ++  +
Sbjct: 303 ARKHQILKDNDPNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARAVTDAIFSEQ 362

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
              + +      + + ++  +       +          S   IS  +L   + D    D
Sbjct: 363 FETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEIS--NLPGKLADCSSKD 420

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW----- 653
             I + Y     +    A      + ++   +   + +    RL+ I   +E        
Sbjct: 421 PSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAIITAL 480

Query: 654 -HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNRIE-ENYLTILS 706
             G   + DI   R  + +      ++G+ I +    F  +Y R F  R         L 
Sbjct: 481 GTGIGEDFDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYVYIAQPPLY 540

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTR 760
            I  G ++K       L+ I +     +      ++QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 541 KIEQGKQVKYAYNDRQLEKILAE----LPENPKPTIQRYKGLGEMNPEQLWETTMNPETR 596

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +LL+V + DA +AD+ F  LMGD+VEPRR+FI+EN+     LDI
Sbjct: 597 TLLQVSLQDAIEADETFEILMGDKVEPRRQFIEENARYVKNLDI 640


>gi|145577977|gb|ABP82707.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar higo]
 gi|145577979|gb|ABP82708.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar kenyae]
 gi|145578009|gb|ABP82723.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar azorensis]
 gi|145578021|gb|ABP82729.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar zhaodongensis]
          Length = 632

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 153/447 (34%), Gaps = 47/447 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802
           F  LMGD+VEPRR FIQEN+     LD
Sbjct: 606 FEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|190710595|gb|ACE95128.1| gyrase subunit B [Bacillus thuringiensis serovar pondicheriensis]
          Length = 627

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 288/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 156/461 (33%), Gaps = 46/461 (9%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|330837805|ref|YP_004412446.1| DNA gyrase subunit B [Spirochaeta coccoides DSM 17374]
 gi|329749708|gb|AEC03064.1| DNA gyrase subunit B [Spirochaeta coccoides DSM 17374]
          Length = 660

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 279/594 (46%), Positives = 391/594 (65%), Gaps = 10/594 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D   +  Y A+SIQ+LKGL+AV+KRP MYIG T G  GLHH++YE++DN+IDE++ GY
Sbjct: 20  MADAEGSRKYTANSIQVLKGLEAVRKRPGMYIGST-GIEGLHHLVYEIVDNSIDEAMAGY 78

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I +T+      TV DNGRGIP D+H  E  S  EV++T LHAGGKF++ SYKVSGGL
Sbjct: 79  CDYIRITIEPGQIITVEDNGRGIPVDIHPVENKSTLEVVLTMLHAGGKFDKGSYKVSGGL 138

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS W+++ + R  N+Y   +  GI D P+ V G   + TGT V F   + 
Sbjct: 139 HGVGSSVVNALSEWMEVTVHRAPNVYRQVYHKGIPDAPVEVIGQT-DRTGTIVRFKADTT 197

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           I    +++Y TL  R REL+FLN  + IS+ D+R+ E +E    ++GGI++FV YL+++ 
Sbjct: 198 IMDTDEYSYTTLAERFRELAFLNKGITISVGDERTEEKKERNFCFEGGIKSFVEYLNKNN 257

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           K +   PI  +  +D++ ID+A+++ND Y E +  F NNI  ++GGTHLSG RS +TR +
Sbjct: 258 KTIHPEPIFFEREKDDLKIDIALQYNDRYDEILYTFVNNINTREGGTHLSGFRSGMTRAV 317

Query: 301 TSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
              ++K+    K        DD REG T+++SIK+PDP+F  QTK KL +  V+ +V S 
Sbjct: 318 NEQLKKNAKLTKKFTDPLTTDDLREGLTAIVSIKIPDPQFEGQTKMKLGNQRVQGIVTSV 377

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ + +E P   ++I++K + A+  R AAR AR   R+        LPGKLA C+E
Sbjct: 378 VYENLTNYFDEFPAVTEMILEKCVSAAKARMAARDARARVRKSAE--GLGLPGKLAPCAE 435

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP KSE+F+VEGDSAGGSAKQGR R+ QAILPL GK+LNVE+AR +K++ + ++  +I 
Sbjct: 436 KDPAKSEIFIVEGDSAGGSAKQGRDRQCQAILPLWGKMLNVEKAREEKVMDNDKLTPVIA 495

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           +LG G+G   FD  K+RYHK+IIM DADVDG+HIRTLLLTFFFR M  LI  G++Y   P
Sbjct: 496 SLGAGLG-SHFDAEKVRYHKVIIMADADVDGSHIRTLLLTFFFRYMRPLIEKGYVYFAMP 554

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSL----SEEIELFCDSKGVISKNDLRN 589
           PLY IT GKS+ Y  DE++    L   ++    ++         G ++ + L  
Sbjct: 555 PLYKITVGKSVSYAYDEDARVRILTENNVGPDGNKAAIQRYKGLGEMNPDQLWE 608



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  QLWETT+NPDTR + +V + DA +AD +FS LMG+EVEPRR FI+EN
Sbjct: 592 IQRYKGLGEMNPDQLWETTMNPDTRMITQVCLEDAIEADQVFSMLMGEEVEPRRVFIEEN 651

Query: 796 SLPS-ALDI 803
           +     LD+
Sbjct: 652 ATYVSNLDV 660


>gi|329121792|ref|ZP_08250408.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister
           micraerophilus DSM 19965]
 gi|327468065|gb|EGF13553.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister
           micraerophilus DSM 19965]
          Length = 646

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 307/653 (47%), Positives = 417/653 (63%), Gaps = 18/653 (2%)

Query: 1   MSDNIQNSS--------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           MS+  + +         Y A  I++L+GL+AV+ RP MYIG T    GLHH++YEV+DN+
Sbjct: 1   MSEENRKAGASGRKDGHYSAKDIRVLEGLEAVRLRPGMYIGSTSA-RGLHHLVYEVVDNS 59

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+   I V+LN DGSCTV DNGRGIPT +H E G  A EV++T LHAGGKF  +
Sbjct: 60  IDEALAGFCTHIEVSLNDDGSCTVVDNGRGIPTGMH-ETGRPAMEVVLTVLHAGGKFGGE 118

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            Y +SGGLHGVG+SVVNALS W K+ ++R+G  +EM+F  G +   +   G    +TGT 
Sbjct: 119 GYAISGGLHGVGISVVNALSEWTKVNVRRDGKFHEMAFCRGDVSESMRTYGETS-ETGTT 177

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           VTF P   IF    DF+YDTL+ R+REL+FLN  ++I+L D R    R     Y GGI  
Sbjct: 178 VTFKPDPLIFKEGTDFDYDTLKVRMRELAFLNKGLRITLSDNRDGVSRVEEFHYAGGIVE 237

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           F+ +L+  K  +    I  +G RD I +D+AM++  GY E++  F N+I   +GG HLSG
Sbjct: 238 FIKFLNEGKDAVHDDVISFEGERDKIIVDIAMQYQTGYSESMYTFVNDINTTEGGMHLSG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR I  Y   +   K+++ ++ GDD REG T V+S+K+P+P+F  QTK KL + E
Sbjct: 298 FRSALTRTINDYARTNNLLKENEDNLTGDDVREGLTCVISVKVPNPQFEGQTKTKLGNLE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ VV++ V++GL  +LEEHP EA++IV+K + AS  R+AA+RAR+LTRRK  L+++SLP
Sbjct: 358 VKGVVDNIVSEGLHIYLEEHPSEARLIVEKGITASRAREAAKRARELTRRKNALEVSSLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL+DCSE+DPKK+E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L+S
Sbjct: 418 GKLSDCSEKDPKKTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKARVDRVLNS 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
             I  +ITA GTG+  + FDI+KLRY+KIIIMTDADVDGAHIRTLLLTFF+R M  LI  
Sbjct: 478 DTIRMMITAFGTGV-SEGFDISKLRYYKIIIMTDADVDGAHIRTLLLTFFYRYMKPLITE 536

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI KPPLY + +G+   Y  D++     L                G +    L N  
Sbjct: 537 GHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDGCTIQRYKGLGEMDPEQLWNT- 595

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                ++   +          +E   +  +   +  +     +     N  N 
Sbjct: 596 ----TMNPEQRVMMRVELTDAVEADRLFTILMGDKVEPRRKFIEENAMNVTNL 644



 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 3/126 (2%)

Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQR 738
            + +F  +Y + + +          L  +  G +   T      + +    GR G ++QR
Sbjct: 521 LLLTFFYRYMKPLITEGHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDGCTIQR 580

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLW TT+NP+ R ++RV++TDA +AD LF+ LMGD+VEPRR+FI+EN++ 
Sbjct: 581 YKGLGEMDPEQLWNTTMNPEQRVMMRVELTDAVEADRLFTILMGDKVEPRRKFIEENAMN 640

Query: 799 S-ALDI 803
              LDI
Sbjct: 641 VTNLDI 646


>gi|284037876|ref|YP_003387806.1| DNA gyrase subunit beta [Spirosoma linguale DSM 74]
 gi|283817169|gb|ADB39007.1| DNA gyrase, B subunit [Spirosoma linguale DSM 74]
          Length = 666

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 284/605 (46%), Positives = 390/605 (64%), Gaps = 21/605 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +   S+Y AD+IQ+L+GL+AV+KRPSMYIGD  G  GLHH+I+EV+DN+IDE+L GY D 
Sbjct: 13  DTTKSNYGADNIQVLEGLEAVRKRPSMYIGDV-GIRGLHHLIWEVVDNSIDEALAGYCDK 71

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I+VT+N D S TV DNGRGIPT ++ + G SA E+ MT LHAGGKF++ +YKVSGGLHGV
Sbjct: 72  ISVTINPDNSITVQDNGRGIPTGINTKMGKSALEIAMTILHAGGKFDKDTYKVSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVS VNALS+ +++ + REG I+E  +  G+    + V G A  DTGT   F P + IF+
Sbjct: 132 GVSCVNALSTDVRVEVHREGKIFEQEYKIGVPQYDVRVIGEAT-DTGTTTHFKPDASIFT 190

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLI-----DKRSPEPREITMFYKGGIEAFVSYLDR 238
              + YDT+  RLREL++LN  + I L      D+     R+   F +GG+  FV +LD 
Sbjct: 191 ETVYKYDTVAGRLRELAYLNKGIHIFLKDMREVDETGEPVRQDDFFSEGGLIEFVEFLDE 250

Query: 239 HKKP-LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +       PI ++ ++    + +A+ +N    ENVL + NNI   +GGTH+ G RSALT
Sbjct: 251 TRPALDGMKPIYMENTKGATPVQVALVYNYEAGENVLSYVNNINTHEGGTHVQGFRSALT 310

Query: 298 RQITSYVEKS---FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           R + +Y +K+         K +  G+D R+G T+V+S+K+ +P+F  QTK KL + +V S
Sbjct: 311 RVLKNYADKNPGVLPKNSGKVTFSGEDFRKGLTAVISVKVQEPQFEGQTKTKLGNQDVVS 370

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPG 412
            V   + D L  WLEE+P  A+ IVKKVL ++  R AA  A  R +T RK  +    LPG
Sbjct: 371 AVSQTMADLLETWLEENPKTAQGIVKKVLVSAQARIAADLAYKRIMTERKDFMGGMGLPG 430

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+ DP+K EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A   K+  ++
Sbjct: 431 KLADCSDTDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMEHKIYENE 490

Query: 473 EIGTLITALGTGIGQDS----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           EI  + TALG  + +       +++KLRYHKIIIMTDADVDG+HIRTL+LT F+R M +L
Sbjct: 491 EIKNIWTALGVRLEKKDDETVMNLDKLRYHKIIIMTDADVDGSHIRTLILTLFYRNMKAL 550

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISK 584
           I NG++YI +PPLY + +GK  +Y   E   E  +   + S   E          G ++ 
Sbjct: 551 IDNGYIYIAQPPLYLVKKGKEERYCWTEAQREAAVKELAGSGREENVGVQRYKGLGEMNA 610

Query: 585 NDLRN 589
             L +
Sbjct: 611 EQLWS 615



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 16/187 (8%)

Query: 626 SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
            + E   ++ + L  RL    +++  +      +  I++            L  +  +  
Sbjct: 487 YENEEIKNIWTALGVRLEKKDDETVMNLDKLRYHKIIIMTDADVDGSHIRTLILTLFY-- 544

Query: 686 GSKYKRIFSNRIEENYL----TILSLICNG-DKIKITGPCSLLDTIFSIGRKG----ISM 736
                R     I+  Y+      L L+  G ++            +  +   G    + +
Sbjct: 545 -----RNMKALIDNGYIYIAQPPLYLVKKGKEERYCWTEAQREAAVKELAGSGREENVGV 599

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLW TT+NPDTRSL  V +  A+ AD +FS LMGDEV PRREFI+ N+
Sbjct: 600 QRYKGLGEMNAEQLWSTTMNPDTRSLKVVTVESAADADHVFSTLMGDEVAPRREFIERNA 659

Query: 797 LPSALDI 803
             + +D+
Sbjct: 660 KYARVDV 666


>gi|219685160|ref|ZP_03539980.1| DNA gyrase, B subunit [Borrelia garinii Far04]
 gi|219673256|gb|EED30275.1| DNA gyrase, B subunit [Borrelia garinii Far04]
          Length = 634

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 284/639 (44%), Positives = 419/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYAASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIDVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+G I+  +F  GI  + + V G +   TGT+VTFL  S+IF   D+N
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESSI-TGTKVTFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + I++ DKR+ + +    +++GGI++FV YL    K       
Sbjct: 180 FDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSESY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE++ +VE  V + L   +
Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYEHLLEII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE  II++K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 NSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCASKNPSEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHK+IIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 480 -FDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538

Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  DE+  E +L +    + +          G ++   L         +D   +   
Sbjct: 539 RIYYCYDEKEKEKFLDSIETKNRNNISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    IE   I      +  +     +     N +N 
Sbjct: 594 LINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F      I +  I      +  +  +               LD+I +  R  IS+Q
Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYCYDEKEKEKFLDSIETKNRNNISLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627

Query: 798 PS-ALDI 803
               LD+
Sbjct: 628 NVINLDV 634


>gi|229816230|ref|ZP_04446540.1| hypothetical protein COLINT_03280 [Collinsella intestinalis DSM
           13280]
 gi|229808238|gb|EEP44030.1| hypothetical protein COLINT_03280 [Collinsella intestinalis DSM
           13280]
          Length = 674

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 280/678 (41%), Positives = 399/678 (58%), Gaps = 21/678 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    + Y    I++L+GL+AV+ RP MYIG T   +GLHH+++E++DN++DE++ G+
Sbjct: 1   MAN---ENEYGGSEIKVLEGLEAVRVRPGMYIGSTSS-TGLHHLVWEIVDNSVDEAMAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV DNGRGIP D+H  + I   EV+MT LHAGGKF+  +YKVSGGL
Sbjct: 57  CSSIEVTVHPDNSITVVDNGRGIPVDMHPVKKIPTLEVVMTILHAGGKFDNSAYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + ++++R+G +YEM F  G     +   G++     T VTF P  +
Sbjct: 117 HGVGVSVVNALSKKMNVKVRRDGKVYEMEFSRGKTTQKMREIGTSSTTG-TTVTFWPDDE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +++D L  RL++ +FLN +++I L D+RS EP+     Y GGI  FV +L+  K
Sbjct: 176 IFETTVYDFDILHDRLQQTAFLNKNLKIVLRDERSVEPQVEEFCYAGGIIDFVKFLNEGK 235

Query: 241 KPL--MQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
                ++ PI + G+            +++A++WN  Y E+V+ F N+I   +GG H+ G
Sbjct: 236 TVPDGLKDPIYLAGASEDGAPVEKTGEVEVAIQWNTSYSESVVSFANDIRTIEGGMHMEG 295

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALT  I  Y  K+   K+ + ++ GDD REG T+V+S+K+ DP+F  QTK KL SS 
Sbjct: 296 FRGALTSVINEYARKNGIIKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGSSF 355

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +R++    V++GL+ +LEEHP +A+ I+KK   AS  R+AAR+AR+ TRRK +L+ ASLP
Sbjct: 356 MRTLTRKIVSEGLAEYLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETASLP 415

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCSER+ + +ELF+VEGDSAGGSAK GR R+ QAILPLRGKILNVER    +  SS
Sbjct: 416 GKLADCSERNAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSS 475

Query: 472 QEIGTLITALGTGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + I +LITA+G G+         FDI K RYHKIIIMTDADVDGAHIR LLLTFF++ M 
Sbjct: 476 ETIQSLITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMR 535

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G++Y+  PP++GI     + YV    +               L  +      +  
Sbjct: 536 PLIDAGYVYVACPPIFGIKVRNKIHYVY--PNGRQAEDEILRDSIAALGLNPDESEDEQS 593

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
                                 D   +    +           I  ++ +  A R    +
Sbjct: 594 NGKVTKKRKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAIVADRAVRELMGS 653

Query: 647 EKSEKSWHGSINNSDILV 664
           E   +  +   +  D   
Sbjct: 654 EVGYRREYIEKHAHDARF 671



 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           RKG ++QRYKGLGEM+  QL  TT++P TR L RV I DA  AD     LMG EV  RRE
Sbjct: 601 RKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAIVADRAVRELMGSEVGYRRE 660

Query: 791 FIQENSLPSA-LD 802
           +I++++  +  LD
Sbjct: 661 YIEKHAHDARFLD 673


>gi|258513372|ref|YP_003189594.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771]
 gi|257777077|gb|ACV60971.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 635

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 302/589 (51%), Positives = 417/589 (70%), Gaps = 6/589 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + I    Y A+ IQ+L+GL+AV++RP MYIG T G  GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MPERI-TERYGAEEIQVLEGLEAVRRRPGMYIGST-GAKGLHHLVYEVVDNSIDEAMAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N D S TV+DNGRGIP D+H + G SA E++MT LHAGGKF    YKVSGGL
Sbjct: 59  CDHIEVFINEDNSITVTDNGRGIPVDIHSKTGNSAVELVMTTLHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS WL++ ++R+G I+   +  GI  + L + G +   TGT++TF P  +
Sbjct: 119 HGVGVSVVNALSKWLEVEVRRQGKIFFQRYERGIPVSDLKIVGDSSF-TGTKITFSPDEE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+ +TL+ RL+EL++LNS V+I L D  +          +GGI+ FV+++++ K
Sbjct: 178 IFEDVIFSRETLEQRLQELAYLNSRVKIYLKDFINNLEFSYMY--EGGIKDFVAHINQDK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L ++P+     +D++ +++AM++ D Y EN+  + NNI   DGGTH +G RSALTR I
Sbjct: 236 ILLPEAPLYFVREKDHVMVEVAMQYTDAYFENLFSYVNNIHTIDGGTHEAGFRSALTRVI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K+   K ++ ++ G+D REG T+V+SIK+P+P+F  QTK KL +SEVR +V+S V
Sbjct: 296 NDYAKKNNLIKNNEGNLSGEDIREGLTAVISIKVPEPQFEGQTKGKLGNSEVRGIVDSVV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +GLS +LEE+P  +K I++K + A   R+AAR+AR+LTRRK VL+ ++LPGKL+DCS R
Sbjct: 356 AEGLSTFLEENPAVSKKIIEKSISAFRAREAARKARELTRRKNVLESSTLPGKLSDCSNR 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+AR DK+L++ EI  +ITA
Sbjct: 416 DPSESELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARLDKILNNDEIRAMITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTGIG+D FDI K RYHK+IIMTDADVDG+HIRTLLLTFF+R M  LI  G+++I +PP
Sbjct: 476 LGTGIGED-FDITKARYHKLIIMTDADVDGSHIRTLLLTFFYRYMRPLIEAGYIFIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY + +GK   Y+  +  LE+ L     +          G +    L +
Sbjct: 535 LYRLKKGKMEIYLYSDRDLENKLKEVGRNGISIQRYKGLGEMDAQQLWD 583



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 12/192 (6%)

Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672
           +E+A +  + N +  + +  +L + +    +    +  K           L+      V 
Sbjct: 455 VEKARLDKILNNDEIRAMITALGTGIGEDFDITKARYHK-----------LIIMTDADVD 503

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +      F +      I +  I      +  L     +I +     L + +  +GR 
Sbjct: 504 GSHIRTLLLTFFYRYMRPLIEAGYIFIAQPPLYRLKKGKMEIYLYSDRDLENKLKEVGRN 563

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           GIS+QRYKGLGEM+A QLW+TT++P+ R++L V++ +A++AD +F  LMGD VEPRR FI
Sbjct: 564 GISIQRYKGLGEMDAQQLWDTTMDPENRTILMVELENAAEADKIFDTLMGDRVEPRRSFI 623

Query: 793 QENSLPS-ALDI 803
            +++     LDI
Sbjct: 624 NKHAHDVRNLDI 635


>gi|145577961|gb|ABP82699.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar finitimus]
 gi|145578027|gb|ABP82732.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar poloniensis]
          Length = 632

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 289/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 158/466 (33%), Gaps = 47/466 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  I  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|320527132|ref|ZP_08028319.1| DNA gyrase, B subunit [Solobacterium moorei F0204]
 gi|320132460|gb|EFW25003.1| DNA gyrase, B subunit [Solobacterium moorei F0204]
          Length = 664

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 264/592 (44%), Positives = 373/592 (63%), Gaps = 8/592 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D     +Y+   IQ+L GL+AV+KRP MYI  T    GLHH+++E++DN IDE++ GYA 
Sbjct: 24  DMKVTHTYNDSDIQVLDGLEAVRKRPGMYIASTSS-KGLHHLVWEIVDNGIDEAMAGYAS 82

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            +TVT++ D   TV D+GRG+PT +H++ G S  E I T LHAGGKF   +YKVSGGLHG
Sbjct: 83  TVTVTVDKDNIITVEDDGRGMPTGIHEKTGKSTIETIFTVLHAGGKFGGGAYKVSGGLHG 142

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG-NDTGTEVTFLPSSD 180
           VG SVVNALSSWL++ +  +G  Y + F N G     L+  G+   +  G+ V F     
Sbjct: 143 VGASVVNALSSWLEVTVFHDGKEYYIRFENGGHPVGTLIEKGTCPADKHGSTVRFKADPT 202

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLI--DKRSPEPREITMFYKGGIEAFVSYLD 237
           IF+    + +D L+ RLR+L+FLN S+ +      +     R     + GG++ +  +L+
Sbjct: 203 IFTETVAYEHDILRDRLRQLAFLNKSICLKFNDLREEDEAKRHYVFKFDGGLKQYTEFLN 262

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R++  +    I  +G   NI +++A ++NDGY+ N+  F NNI   +GGTH  G R AL 
Sbjct: 263 RNRDVVNHEIIYSEGYESNIQVEVACQYNDGYNPNIYTFCNNINTAEGGTHEEGFRLALN 322

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y   +   K+   ++  DDCREG T+V+S+K PDP++  QTK KL +SEVR +V 
Sbjct: 323 RVINKYARDTGFLKEKDDNLTTDDCREGLTAVISVKHPDPQYEGQTKTKLGNSEVRKIVS 382

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
                 L  +L E+P EAK+I++KV  AS  R AA++AR+LTRRK  L+++ LPGKLADC
Sbjct: 383 DIFGTQLERYLMENPDEAKVILEKVALASQARMAAKKARELTRRKSALEVSPLPGKLADC 442

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D    E+++VEG SAGGSAKQGR    QAILPLRGKILNVE+AR  ++  + EI ++
Sbjct: 443 SSKDASICEIYIVEGQSAGGSAKQGRDSHFQAILPLRGKILNVEKARQSRIYENAEIRSM 502

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITA G G+  +  D+ KLRYHKI+IMTDADVDGAHIRTLLLTFF+R +  L+  G++YI 
Sbjct: 503 ITAFGCGVSDEI-DLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLRPLLEQGYIYIA 561

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +PPLY + +G++++Y   +  LE+                  G ++   L  
Sbjct: 562 QPPLYKVQKGQTVRYAYTDNQLEEVKRELG-DRLSIQRYKGLGEMNPEQLWE 612



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 10/128 (7%)

Query: 681 SIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTI-FSIGRKGIS 735
            + +F  +Y R     +E+ Y+      L  +  G  ++     + L+ +   +G + +S
Sbjct: 540 LLLTFFYRYLRPL---LEQGYIYIAQPPLYKVQKGQTVRYAYTDNQLEEVKRELGDR-LS 595

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  QLWETT++P  R+L+RV + DA  AD  F+ LMG+EVEPR+ FI EN
Sbjct: 596 IQRYKGLGEMNPEQLWETTMDPKNRTLIRVAVGDAEAADYNFTMLMGEEVEPRKNFIVEN 655

Query: 796 SLPS-ALD 802
           +  +  LD
Sbjct: 656 AHFAENLD 663


>gi|254168966|ref|ZP_04875805.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
 gi|197622072|gb|EDY34648.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
          Length = 648

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 297/660 (45%), Positives = 402/660 (60%), Gaps = 30/660 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + +    YDA +IQIL+   AV+KRP MYIG TD E GLHH+IYEV+DN+IDE+L GY
Sbjct: 1   MVEKMSK--YDAKAIQILEDAQAVRKRPGMYIGSTD-ERGLHHLIYEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ DGS +V D+GRGIP D+H E+G SA EV+MT LHAG KF++K+Y+++GGL
Sbjct: 58  CSRINVIIHKDGSVSVEDDGRGIPVDMHPEKGKSALEVVMTVLHAGAKFDKKAYRITGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--------------- 165
           HGVG+ VVN LS WLK  IKR+G IY   +  G     + V G                 
Sbjct: 118 HGVGIHVVNFLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEK 177

Query: 166 -GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
                GT + F P ++IF   +F Y  ++ +LR+L+FLN  ++I+L D+RS +       
Sbjct: 178 FKYSRGTYIRFKPDAEIFETTEFKYSIVKKKLRDLAFLNRGIEIALEDERSGKK--EIFK 235

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y GGI  FV +L+    P+ +  +  +  +D I ++ AM++ND   EN+L F N I   +
Sbjct: 236 YDGGIVEFVKFLNEGYNPIHRDVVYGKDEQDGIIVEFAMQYNDSTSENLLAFVNTIHTVE 295

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH+SG RSALT+ I  + +     K    S+ G+D REG T+V+ +K P+P+F  QTK
Sbjct: 296 GGTHVSGFRSALTKVINDFAKSRNLLKGID-SLQGEDVREGLTAVIHVKHPNPQFEGQTK 354

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEV+ VV S VN  LS + EEHP  A  IV K + A+  R AAR+AR+L RRKG 
Sbjct: 355 AKLGNSEVKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGY 414

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+   LPGKLADCSE +P+++ELF+VEGDSAGGSAKQ R R  QAILPLRGKILNVE+AR
Sbjct: 415 LESLDLPGKLADCSEENPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKAR 474

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            DK+  + EI  LI+A+GTG+ ++ FD +KLRY KIIIMTDADVDGAHIRTLLLTFF+R 
Sbjct: 475 IDKVFKNNEIRALISAIGTGV-REDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRY 533

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           MP LI  G +YI + PLY I +GK++ YV  +E  E     + L           G ++ 
Sbjct: 534 MPELIEKGHIYIAQAPLYRIQKGKNIYYVYSDEEKE--EKLRELGNASVQRFKGLGEMNP 591

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             L +       ++   +       +   E   +  +   E        +       +N 
Sbjct: 592 QQLWDT-----TMNPETRRLIRVTIEDAAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 646



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 5/198 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   V   +++   ++ I     + +  S      ++  
Sbjct: 455 RHFQAIL--PLRGKILNVEKARIDKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIM 512

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I      +  +    +   +       + +
Sbjct: 513 TDADVDGAHIRTLLLTFFYRYMPELIEKGHIYIAQAPLYRIQKGKNIYYVYSDEEKEEKL 572

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             +G    S+QR+KGLGEMN  QLW+TT+NP+TR L+RV I DA++AD LFS LMG++V 
Sbjct: 573 RELG--NASVQRFKGLGEMNPQQLWDTTMNPETRRLIRVTIEDAAEADRLFSILMGEQVG 630

Query: 787 PRREFIQENSLPS-ALDI 803
           PRREFI +++     +DI
Sbjct: 631 PRREFIIQHAKEVMNIDI 648


>gi|190710575|gb|ACE95118.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
          Length = 627

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 285/566 (50%), Positives = 401/566 (70%), Gaps = 5/566 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE 571
           +GK +QY  +++ LE  L       +
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPK 562



 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 150/442 (33%), Gaps = 46/442 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN + +WETT++P+ RSLL+V + DA +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTLIWETTMDPEVRSLLQVSLQDAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLP 798
           F  LMGD+VEPRR FIQEN+  
Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627


>gi|167766860|ref|ZP_02438913.1| hypothetical protein CLOSS21_01377 [Clostridium sp. SS2/1]
 gi|167711408|gb|EDS21987.1| hypothetical protein CLOSS21_01377 [Clostridium sp. SS2/1]
 gi|291558400|emb|CBL37200.1| DNA gyrase, B subunit [butyrate-producing bacterium SSC/2]
          Length = 640

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 313/638 (49%), Positives = 414/638 (64%), Gaps = 4/638 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +N  Y AD IQIL+GL+AV+KRP MYIG T  E GLHH++YE++DNA+DESL G+ D 
Sbjct: 3   TQKNGEYGADQIQILEGLEAVRKRPGMYIGSTS-EKGLHHLVYEIVDNAVDESLAGFCDT 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VTLN DGS TV DNGRGIP  ++K++G+S+ EV+ T LHAGGKF    YKVSGGLHGV
Sbjct: 62  IIVTLNKDGSVTVEDNGRGIPVGINKKKGVSSVEVVFTILHAGGKFGGGGYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS WL++ + +EG+I++  +  G +  PL V G   + TGT VTF P + IF 
Sbjct: 122 GSSVVNALSDWLEVTVCKEGHIHKQRYERGKVCYPLKVLGDT-DKTGTTVTFYPDATIFE 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             DF+Y+TL+ RLRE +FL  +++I L D R  E    T  Y+GGI+ FV+YL++ K+ L
Sbjct: 181 TIDFDYNTLKRRLRETAFLTKNLKIVLTDDRGEEQVSETFHYEGGIKEFVTYLNKGKEAL 240

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I  +G +D + +++A + ND Y+E  L F NNI   +GGTHLSG + ALT     Y
Sbjct: 241 YPDVIYCEGEKDGVYVEVAFQHNDSYNETSLSFVNNIITPEGGTHLSGFKMALTSTFNDY 300

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K+ + ++ G+D REG TSV+SIK+ +P+F  QTK+KL +SE R  V S +++ 
Sbjct: 301 ARKNNLLKEKEDNLSGEDIREGLTSVISIKIGEPQFEGQTKQKLGNSEARGAVNSILSEQ 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +LE++P  AKII +K + A   RDAAR+ARDLTRRK  LD  SLPGKLADCS+++P+
Sbjct: 361 LKYFLEQNPQVAKIICEKAVLAQRARDAARKARDLTRRKTALDGMSLPGKLADCSDKNPE 420

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR DK+L ++EI  +ITA GT
Sbjct: 421 NCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKVLVNKEIQAMITAFGT 480

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI +D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY 
Sbjct: 481 GIHED-FDIEKLRYHKIIIMTDADVDGAHIATLLLTFIYRFMPELIKKGYVYLAQPPLYR 539

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           + + K   Y   +E L + L                 G +    L +   D  K   L  
Sbjct: 540 VEKNKKFWYAYSDEELNNILQEIGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEKRILLRV 599

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           +   +                 E  +E   + A  + N
Sbjct: 600 NLDEDSASEIDLTFTTLMGDQVEPRREFIEANAKYVQN 637



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSL 707
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y+      L  
Sbjct: 480 TGIHEDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFIYRFMPELIKKGYVYLAQPPLYR 539

Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K         L + +  IGR   + +QRYKGLGEM+A QLW+TT++P+ R LLRV
Sbjct: 540 VEKNKKFWYAYSDEELNNILQEIGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEKRILLRV 599

Query: 766 KITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + +  AS+ D  F+ LMGD+VEPRREFI+ N+     LDI
Sbjct: 600 NLDEDSASEIDLTFTTLMGDQVEPRREFIEANAKYVQNLDI 640


>gi|254166743|ref|ZP_04873597.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
 gi|197624353|gb|EDY36914.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
          Length = 648

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 298/660 (45%), Positives = 402/660 (60%), Gaps = 30/660 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + +    YDA +IQIL+   AV+KRP MYIG TD E GLHH+IYEV+DN+IDE+L GY
Sbjct: 1   MVEKMSK--YDAKAIQILEDAQAVRKRPGMYIGSTD-ERGLHHLIYEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ DGS +V D+GRGIP D+H E+G SA EV+MT LHAG KF++K+Y+++GGL
Sbjct: 58  CSRINVIIHKDGSVSVEDDGRGIPVDMHPEKGKSALEVVMTVLHAGAKFDKKAYRITGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--------------- 165
           HGVG+ VVN LS WLK  IKR+G IY   +  G     + V G                 
Sbjct: 118 HGVGIHVVNFLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEK 177

Query: 166 -GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
                GT + F P ++IF   +F Y  ++ +LR+L+FLN  ++I+L D+RS +       
Sbjct: 178 FKYSRGTYIRFKPDAEIFETTEFKYSIVKKKLRDLAFLNRGIEITLEDERSGKK--EVFK 235

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y GGI  FV +L+    P+ +  +  +  +D I ++ AM++ND   EN+L F N I   +
Sbjct: 236 YDGGIVEFVKFLNEGYNPIHRDVVYGKDEQDGIIVEFAMQYNDSTSENLLAFVNTIHTVE 295

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH+SG RSALT+ I  + +     K    S+ G+D REG T+V+ +K P+P+F  QTK
Sbjct: 296 GGTHVSGFRSALTKVINDFAKSRNLLKGID-SLQGEDVREGLTAVIHVKHPNPQFEGQTK 354

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEV+ VV S VN  LS + EEHP  A  IV K + A+  R AAR+AR+L RRKG 
Sbjct: 355 AKLGNSEVKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGY 414

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+   LPGKLADCSE DP+++ELF+VEGDSAGGSAKQ R R  QAILPLRGKILNVE+AR
Sbjct: 415 LESLDLPGKLADCSEEDPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKAR 474

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            DK+  + EI  LI+A+GTG+ ++ FD +KLRY KIIIMTDADVDGAHIRTLLLTFF+R 
Sbjct: 475 IDKVFKNNEIRALISAIGTGV-REDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRY 533

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           MP LI  G +YI + PLY I +GK++ YV  +E  E     + L           G ++ 
Sbjct: 534 MPELIEKGHIYIAQAPLYRIQKGKNIYYVYSDEEKE--EKLRELGNASVQRFKGLGEMNP 591

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             L +       ++   +       +   E   +  +   E        +       +N 
Sbjct: 592 QQLWDT-----TMNPETRRLIRVTIEDAAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 646



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 5/198 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   V   +++   ++ I     + +  S      ++  
Sbjct: 455 RHFQAIL--PLRGKILNVEKARIDKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIM 512

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I      +  +    +   +       + +
Sbjct: 513 TDADVDGAHIRTLLLTFFYRYMPELIEKGHIYIAQAPLYRIQKGKNIYYVYSDEEKEEKL 572

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             +G    S+QR+KGLGEMN  QLW+TT+NP+TR L+RV I DA++AD LFS LMG++V 
Sbjct: 573 RELG--NASVQRFKGLGEMNPQQLWDTTMNPETRRLIRVTIEDAAEADRLFSILMGEQVG 630

Query: 787 PRREFIQENSLPS-ALDI 803
           PRREFI +++     +DI
Sbjct: 631 PRREFIIQHAKEVMNIDI 648


>gi|229014660|ref|ZP_04171774.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048]
 gi|229170197|ref|ZP_04297883.1| DNA gyrase subunit B [Bacillus cereus AH621]
 gi|228613298|gb|EEK70437.1| DNA gyrase subunit B [Bacillus cereus AH621]
 gi|228746671|gb|EEL96560.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048]
          Length = 642

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 285/594 (47%), Positives = 406/594 (68%), Gaps = 9/594 (1%)

Query: 1   MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS     +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L
Sbjct: 1   MSMEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I V++  D S  V+D+GRGIP  + ++ G  A EVIMT LHAGGKF    YKVS
Sbjct: 60  AGYCDEINVSIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L++ + R+G I+   +  G+    L V G   + TGT   F P
Sbjct: 120 GGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKP 178

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S+IF+    + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L
Sbjct: 179 DSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHL 237

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +R K+P+ + P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++AL
Sbjct: 238 NRSKQPIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTAL 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ 
Sbjct: 298 TRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTIT 357

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES  ++    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLAD
Sbjct: 358 ESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLAD 417

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T
Sbjct: 418 CSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRT 477

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +ITA+GT IG D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI
Sbjct: 478 IITAIGTNIGGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYI 536

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            +PPL+ + +GK +QY  + + LE  L       +         G ++   L  
Sbjct: 537 AQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 590



 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 133/368 (36%), Gaps = 33/368 (8%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525
             ++            G       +      K  I+ DAD +  G  +R  L      + 
Sbjct: 276 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 335

Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571
           P+    G           +     +      +++ +  ++   +I+        +  +++
Sbjct: 336 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 395

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                  K  +  + L   + D    D  I + Y     +    A      + ++   + 
Sbjct: 396 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 455

Query: 632 VSLASKLANRLNFIAEKSEKS-------------WHGSINNSDILVKRIARGVQEQFVLE 678
             + +    RL+ I    E               +         ++      V    +  
Sbjct: 456 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRT 515

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736
               F +    + I    I       L  +  G KI+       L+ I +    +    +
Sbjct: 516 LLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGI 574

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+
Sbjct: 575 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 634

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 635 KYVKNLDI 642


>gi|228995401|ref|ZP_04155073.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17]
 gi|229003015|ref|ZP_04160874.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4]
 gi|228758243|gb|EEM07429.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4]
 gi|228764354|gb|EEM13229.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17]
          Length = 640

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 288/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGETDH-TGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                +++DTL  R+REL+FLN ++++ + DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 KETTEYDFDTLATRMRELAFLNRNIKLIIEDKRENKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ + GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVDGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAHPKPGIQRYKGLGEMNPTQLWE 588



 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 6/200 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++   +  I       +         ++  
Sbjct: 444 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIM 501

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I       L  +  G KI+       L+ I
Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKI 560

Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +         +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+
Sbjct: 561 LAELPAHPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 620

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR FIQEN+     LDI
Sbjct: 621 VEPRRNFIQENAKYVKNLDI 640


>gi|307566039|ref|ZP_07628497.1| DNA gyrase, B subunit [Prevotella amnii CRIS 21A-A]
 gi|307345227|gb|EFN90606.1| DNA gyrase, B subunit [Prevotella amnii CRIS 21A-A]
          Length = 656

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 281/660 (42%), Positives = 394/660 (59%), Gaps = 18/660 (2%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++N +  ++Y A +IQ+L+GL+AV+KRP+MYIGD   E GLHH+I E +DN+IDE++ G
Sbjct: 1   MTENQEHENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT+N D S TV DNGRGIP D HK+   SA EV+MT LHAGGKF++ SYKVSGG
Sbjct: 60  YCTDIEVTINADNSITVEDNGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNALS  +  ++ R+G IY+  +  G    P+ + G   + TGT   F P  
Sbjct: 120 LHGVGVSCVNALSKHMLSQVFRDGKIYQQEYEKGKPLYPVKIVGDT-DKTGTRQQFWPDG 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----DKRSPEPREITMFYKGGIEAFVSY 235
            IF+   F +D +  R+REL++LN+ ++I+L     +  + + R      K G++ +V Y
Sbjct: 179 TIFTTTVFQWDVVARRMRELAYLNAGIKITLTDLRPNAETGKTRTEVFHAKDGLKEYVRY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +DRH++ L    I ++  +  + I++A+ +N  Y EN+  + NNI   +GGTHL G R+A
Sbjct: 239 VDRHRQHLFDDVIYLKSEKQGVPIEVAIMYNTDYTENIHSYVNNINTIEGGTHLQGFRTA 298

Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LTR + +Y +     S   +K K  + G+D REG T+V+S+K+ +P+F  QTK KL +SE
Sbjct: 299 LTRSLKAYADNDAQISKQIEKAKIEITGEDFREGLTAVISVKVAEPQFEGQTKTKLGNSE 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+  V + LSA+LEEHP EAK+I  KV+ A+  R AAR+AR+  +RK V+    LP
Sbjct: 359 VSGAVQQAVGEALSAYLEEHPNEAKMICNKVVIAATARIAARKARESVQRKNVMTGGGLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ +  ++  +
Sbjct: 419 GKLADCSNKDPKVCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478

Query: 472 QEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + +  +I ++G   G +       +I KLRY KIIIMTDADVDG+HI TL++T F+R MP
Sbjct: 479 ESVMNIIQSIGVRFGVEEDSDFEANIEKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            +I  G L+I  PPLY  T  K  +Y   E+  + ++      EE +     +       
Sbjct: 539 KVIEQGHLFIATPPLYKCTYKKVSEYCYTEQQRQAFIDRYGAGEEGKNIHTQRYKGLGEM 598

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
               +          K             A          D E       + AN  N  A
Sbjct: 599 NPEQL--WETTMDPSKRLLKQVTIENAADADEVFSMLMGDDVEPRREFIEQNANYANIDA 656



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
             G K I  QRYKGLGEMN  QLWETT++P  R L +V I +A+ AD++FS LMGD+VEP
Sbjct: 582 EEG-KNIHTQRYKGLGEMNPEQLWETTMDPSKRLLKQVTIENAADADEVFSMLMGDDVEP 640

Query: 788 RREFIQENSLPSALD 802
           RREFI++N+  + +D
Sbjct: 641 RREFIEQNANYANID 655


>gi|163938018|ref|YP_001642902.1| DNA gyrase subunit B [Bacillus weihenstephanensis KBAB4]
 gi|229136319|ref|ZP_04265066.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196]
 gi|163860215|gb|ABY41274.1| DNA gyrase, B subunit [Bacillus weihenstephanensis KBAB4]
 gi|228647191|gb|EEL03279.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196]
          Length = 640

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 283/589 (48%), Positives = 404/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+D+GRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G I+   +  G+    L V G   + TGT   F P S+IF
Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +    + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 TETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  + + LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  174 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 6/200 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++   +  I       +         ++  
Sbjct: 444 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIM 501

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I       L  +  G KI+       L+ I
Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKI 560

Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+
Sbjct: 561 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 620

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR FIQEN+     LDI
Sbjct: 621 VEPRRNFIQENAKYVKNLDI 640


>gi|190710605|gb|ACE95133.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
          Length = 627

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGH 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +     HK  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGHKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+  + DA +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQASLQDAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLP 798
           F  LMGD+VEPRR FIQEN+  
Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627


>gi|302531361|ref|ZP_07283703.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
 gi|302440256|gb|EFL12072.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
          Length = 655

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 280/659 (42%), Positives = 390/659 (59%), Gaps = 20/659 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N   S Y+A SI +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ GY
Sbjct: 1   MTEN--KSEYNASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + VTL  DG   V D+GRGIP D+H +E     EV++T LHAGGKF+  SY VSGGL
Sbjct: 58  ATKVEVTLLADGGVRVVDDGRGIPVDIHPKEKKPTLEVVLTILHAGGKFDSDSYAVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ L   IK  G  +   ++N +   PL   G A  DTGT +TF    D
Sbjct: 118 HGVGVSVVNALSTKLLAEIKVGGRSWRQEYLNQVP-GPLEDLGPAT-DTGTTITFWADGD 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------MFYKG 227
           IF    +N++T+  RL+E++FLN  + +SL D+R  +                    Y G
Sbjct: 176 IFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEEDAAGKQARVKEVVYCYPG 235

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+E FV +++  K P+ +S I        + +++AM+WN G+  +V  F N I   +GGT
Sbjct: 236 GLEDFVKHINGSKDPIHESVISFDAKGSGLEVEVAMQWNTGFTPSVYTFANTINTHEGGT 295

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALTR + +Y  +    K+   ++ GDD REG  +++SIK+ +P+F  QTK KL
Sbjct: 296 HEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAAIVSIKLAEPQFEGQTKTKL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SE ++ V+   N+ L  W E +P EAK I+ K + ++  R AAR+ARDL RRKG L+I
Sbjct: 356 GNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSAQARLAARKARDLVRRKGALEI 415

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKL DC   DP + EL++VEGDSAGGSAK+GR    QAILP+RGKI+NVE+AR D+
Sbjct: 416 GGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARIDR 475

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L + E+ +LITALGTGI  D FDI+KLRYHKI++M DADVDG HI TLLLT  FR M  
Sbjct: 476 VLKNTEVQSLITALGTGI-HDDFDISKLRYHKIVLMADADVDGQHITTLLLTLLFRFMTP 534

Query: 528 LIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           LI +G +++ +PPLY I   +S  +Y   ++  +  +     +       D+        
Sbjct: 535 LIEHGHVFLSRPPLYKIKWPRSEPEYAYSDKERDAVIQAGVEAGRRLPKDDAIQRYKGLG 594

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             N  +                      QA          D E   S  ++ A  + F+
Sbjct: 595 EMNAEELWETTMDPANRLLGQVTLDDAAQADELFSVLMGEDVEARRSFITRNAKDVRFL 653



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA +LWETT++P  R L +V + DA+QAD+LFS LMG++VE RR FI  N
Sbjct: 587 IQRYKGLGEMNAEELWETTMDPANRLLGQVTLDDAAQADELFSVLMGEDVEARRSFITRN 646

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 647 AKDVRFLDV 655


>gi|325336741|gb|ADZ13015.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Riemerella anatipestifer RA-GD]
          Length = 644

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 280/595 (47%), Positives = 393/595 (66%), Gaps = 12/595 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N  Y A SIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L GY D I
Sbjct: 1   MSNKQYTASSIQSLEGIEHVRLRPSMYIGDV-GVRGLHHLVYEVVDNSIDEALAGYCDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVT++   + +V DNGRGIP D H++E  SA EV+MT++ AGGKF++ SYKVSGGLHGVG
Sbjct: 60  TVTIHEGNAISVKDNGRGIPVDFHEKEQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALS+     + +EG IY+  +  G     +   G   +  GTEV F P   IF+ 
Sbjct: 120 VSCVNALSTSTIATVYKEGKIYQQKYSKGRALEDVQEIG-TTDYRGTEVFFQPDDSIFNE 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHK 240
             +NYDTL  RLREL+FLN  + I++ D+R      E    T   +GG++ FV ++D ++
Sbjct: 179 LVYNYDTLSARLRELAFLNKGINITITDERVKDEKGEFLTETFLSEGGLKEFVEFIDGNR 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +M++ I ++G RD+I +++AMR+N  + EN+  + NNI   +GGTHL+G R ALTR +
Sbjct: 239 ESIMENVIFMEGERDDIPVEVAMRYNTSFTENLHSYVNNINTHEGGTHLTGFRRALTRTL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +     +K+K  + GDD REG T+V+S+K+ +P+F  QTK KL +SEV   V+  V
Sbjct: 299 KKYADDLGIPQKEKVEITGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAVDKIV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +LEE+P EAK IV+KV+ A+  R AA++AR++ +RK  +  A LPGKL+DCS +
Sbjct: 359 GEMLTNFLEENPTEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGAGLPGKLSDCSSK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SE+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++   K+  ++EI  + TA
Sbjct: 419 DPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMIHKVYENEEIKNIYTA 478

Query: 481 LGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LG  +G +        +KLRYHKI+IMTDAD+DG+HI TL+LTFFFR M  LI  G++YI
Sbjct: 479 LGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIEQGYVYI 538

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
             PPLY + +G    Y  +E+  E+  +  S   +          G ++   L  
Sbjct: 539 ASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKGVEVQRYKGLGEMNPEQLWE 593



 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 691 RIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTIFSIG--RKGISMQRYKGLG 743
           R     IE+ Y+ I S     L     K+         +    +    KG+ +QRYKGLG
Sbjct: 525 RYMKELIEQGYVYIASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKGVEVQRYKGLG 584

Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           EMN  QLWETTLNP+ R L +V I +A +AD +FS LMGDEV PRREFI++N++ + +D
Sbjct: 585 EMNPEQLWETTLNPENRILKQVNIENAGEADRIFSMLMGDEVPPRREFIEKNAVYAKID 643


>gi|145577997|gb|ABP82717.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar pulsiensis]
          Length = 632

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 289/585 (49%), Positives = 406/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +E+ LE  L   S   +         G ++   L  
Sbjct: 537 QGKKIQYAYNEKELEKILAELSAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 158/466 (33%), Gaps = 47/466 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNEKELEKILAELSAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|145577985|gb|ABP82711.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar thompsoni]
          Length = 632

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++ +N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLSYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 154/447 (34%), Gaps = 47/447 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +   S   
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLSYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802
           F  LMGD+VEPRR FIQEN+     LD
Sbjct: 606 FEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|289579993|ref|YP_003478459.1| DNA gyrase subunit beta [Natrialba magadii ATCC 43099]
 gi|289529546|gb|ADD03897.1| DNA gyrase, B subunit [Natrialba magadii ATCC 43099]
          Length = 643

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 281/596 (47%), Positives = 390/596 (65%), Gaps = 12/596 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q S Y A  IQ+L+GL+AV+KRP+MYIG TD   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MS---QESEYGAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV++N D S +V+D+GRGIP D H+E    A EVI+T LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDEITVSINEDDSISVADDGRGIPVDTHEEYDRPALEVILTVLHAGGKFDNKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPS 178
           HGVGVSVVNALSS L+  +KR+G +YE +F  G     +          +TGTE+ F P 
Sbjct: 117 HGVGVSVVNALSSRLETTVKRDGGVYEHAFEIGEPIGDMERVRDMEPDEETGTEIQFWPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVS 234
            DIF   D ++ TL +RLREL+FLNS V+I+L D+R      E    T  Y+GGI  FV 
Sbjct: 177 DDIFETTDMSFSTLSNRLRELAFLNSGVRITLRDERERTEDGEAVAETYEYEGGIREFVE 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+  +  + +  I  +    N+ +++AM+       ++  F NNI  ++GGTHL+G ++
Sbjct: 237 YLNETRSAMHEDIIYFEDEDQNVRVEVAMQATQELQGSIHAFANNINTREGGTHLTGFKT 296

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR +  Y  ++      + ++ G+D REG T+V+S+K PDP+F  QTK KL +SEVR 
Sbjct: 297 ALTRVVNDYGNENNLLSDIEENLKGEDIREGLTAVVSVKHPDPQFEGQTKTKLGNSEVRG 356

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE  ++D L  + EEHP  A+ IV K ++A+  R AA++A +LTRRK  L+  SLPGKL
Sbjct: 357 IVEGAMHDCLGTYFEEHPDTAQAIVMKAVEAAKARKAAQKAEELTRRKSALESTSLPGKL 416

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC  +DP+++ELF+ EGDSAGGSAKQ R+ E QA+LP++GKILNVE+ R D++L + EI
Sbjct: 417 ADCQTKDPEEAELFIAEGDSAGGSAKQARNPEFQAVLPIKGKILNVEKHRLDRILENDEI 476

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             +ITA+G GIG D FD+  +RY KII+ TDADVDGAHIRTL+LTFF+R M  L+  G++
Sbjct: 477 RNMITAIGAGIG-DEFDVEDVRYKKIIMATDADVDGAHIRTLMLTFFYRHMRPLLEGGYV 535

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589
           Y  +PPLY I           +   ++ +  +   +          G ++   L  
Sbjct: 536 YATQPPLYRIRYRGETYDAMTDVERDEIVEEKCDGNPSQVQRFKGLGEMNPEQLWE 591



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++ N +  I       +         ++      V    +    
Sbjct: 459 ILNVEKHRLDRILENDEIRNMITAIGAGIGDEFDVEDVRYKKIIMATDADVDGAHIRTLM 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738
             F +      +    +      +  +   G+           D I      G    +QR
Sbjct: 519 LTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTDVER-DEIVEEKCDGNPSQVQR 577

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +KGLGEMN  QLWETT+NP+ R L ++ + DA+ AD +FS LMGD VEPR++FI+EN+  
Sbjct: 578 FKGLGEMNPEQLWETTMNPENRILKQITVEDAAAADKMFSVLMGDAVEPRKQFIKENAPE 637

Query: 799 SA-LDI 803
           +  +DI
Sbjct: 638 AEWIDI 643


>gi|229015410|ref|ZP_04172416.1| DNA gyrase subunit B [Bacillus cereus AH1273]
 gi|229026934|ref|ZP_04183257.1| DNA gyrase subunit B [Bacillus cereus AH1272]
 gi|228734392|gb|EEL85063.1| DNA gyrase subunit B [Bacillus cereus AH1272]
 gi|228745889|gb|EEL95885.1| DNA gyrase subunit B [Bacillus cereus AH1273]
          Length = 640

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 285/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENAYDESQIQVLEGLEAVRKRPGMYIG-TTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNDKELERILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 248 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 294

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 295 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +I+        +  +++       K  +  + L   + 
Sbjct: 355 TESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 533

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 534 IAQPPLFKVQQGKKIQYAYNDKELERILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640


>gi|229065153|ref|ZP_04200446.1| DNA gyrase subunit B [Bacillus cereus AH603]
 gi|228716182|gb|EEL67901.1| DNA gyrase subunit B [Bacillus cereus AH603]
          Length = 640

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 283/589 (48%), Positives = 403/589 (68%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S  V+D+GRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVSIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G I+   +  G+    L V G   + TGT   F P S+IF
Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +    + +DTL  R+REL+FLN ++++ + DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 TETTEYEFDTLATRMRELAFLNRNIKLIIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 481 GTNIGGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + +GK +QY  + + LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588



 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 133/368 (36%), Gaps = 33/368 (8%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525
             ++            G       +      K  I+ DAD +  G  +R  L      + 
Sbjct: 274 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 333

Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571
           P+    G           +     +      +++ +  ++   +I+        +  +++
Sbjct: 334 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 393

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                  K  +  + L   + D    D  I + Y     +    A      + ++   + 
Sbjct: 394 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 453

Query: 632 VSLASKLANRLNFIAEKSEKS-------------WHGSINNSDILVKRIARGVQEQFVLE 678
             + +    RL+ I    E               +         ++      V    +  
Sbjct: 454 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRT 513

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736
               F +    + I    I       L  +  G KI+       L+ I +    +    +
Sbjct: 514 LLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGI 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+
Sbjct: 573 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 632

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 633 KYVKNLDI 640


>gi|213026883|ref|ZP_03341330.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 490

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 301/492 (61%), Positives = 387/492 (78%), Gaps = 4/492 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 486 GQDSFDINKLRY 497
           G+D ++ +KLRY
Sbjct: 479 GRDEYNPDKLRY 490


>gi|190710563|gb|ACE95112.1| gyrase subunit B [Bacillus thuringiensis serovar entomocidus]
          Length = 627

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNCIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPSVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 150/442 (33%), Gaps = 46/442 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  S+
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPSV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V +  A +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQGAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLP 798
           F  LMGD+VEPRR FIQEN+  
Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627


>gi|88602335|ref|YP_502513.1| DNA gyrase, B subunit [Methanospirillum hungatei JF-1]
 gi|88187797|gb|ABD40794.1| DNA gyrase subunit B [Methanospirillum hungatei JF-1]
          Length = 675

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 283/652 (43%), Positives = 391/652 (59%), Gaps = 47/652 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++Y++++I+IL+GL+ V++RP+MYIG TD   GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 7   SNTYNSENIKILRGLEPVRERPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGYCTHIQV 65

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
            ++ DGS +V DNGRGIP D  K+ +  +A E ++T LHAGGKF++ +Y+VSGGLHGVGV
Sbjct: 66  VIHQDGSVSVEDNGRGIPIDPMKDNDNKTALETVLTVLHAGGKFDKNTYQVSGGLHGVGV 125

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-------------------- 165
           SVVNALS  L   + ++G  Y M F  G     L                          
Sbjct: 126 SVVNALSVELTATVWKDGYEYRMFFSRGQPQTDLEKKEEDFEEIKDRYIKRYGSLPDNCP 185

Query: 166 -----------GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
                         +GT + F P S IF   +F+YD L HRLREL+FLNS + IS+ D+R
Sbjct: 186 ETKEEFLNRYLSKISGTMIRFKPDSKIFETIEFDYDILAHRLRELAFLNSGITISIADER 245

Query: 215 SP--EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ--GSRDNISIDLAMRWNDGYH 270
               E       Y+GGI  +V YL+   +P+ +S I          + +D+A ++   Y 
Sbjct: 246 CEDLEECSEVFSYEGGISEYVRYLNHEAQPIHESVISFSRKDEEARVEVDIAFQYAAAYS 305

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E V  + N++  K+GGTHL G RSALT+ I    +++   K    S+ GDD REG T+++
Sbjct: 306 EKVYTYVNSVNTKEGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGLTAII 365

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S++M +P+F  QTK KL +SEV+ +V+S V   L  + EEHP E   IV K + A   R+
Sbjct: 366 SVRMANPQFEGQTKMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAYQARE 425

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+A++L RRK  L+ + LPGKLADCSER  +KSE+++VEGDSAGGSAKQGR R  QAI
Sbjct: 426 AARKAKELARRKSTLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRRFQAI 485

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGKILNVE+A   K+L + EI  LI+A+GTG+G+  FDI K RYH IIIMTDADVDG
Sbjct: 486 LPLRGKILNVEKATVHKILKNNEIQALISAIGTGVGES-FDIEKARYHHIIIMTDADVDG 544

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHI TLL+TFFFR +  LI  G++Y+ +PPLY I +GK  +Y   EE +++ L       
Sbjct: 545 AHISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGEKG 604

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                    G ++ + L             +        +  IE A  +   
Sbjct: 605 VNVQRYKGLGEMNASQLWA---------TTMDPETRVLKRVVIEDAAYANEI 647



 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 643 NFIAEKSEKSWHGSINNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSN 695
           N I         G   + DI   R           V    +      F F      I + 
Sbjct: 507 NEIQALISAIGTGVGESFDIEKARYHHIIIMTDADVDGAHISTLLMTFFFRYLQPLIEAG 566

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755
            I      +  +     +        + + +  +G KG+++QRYKGLGEMNASQLW TT+
Sbjct: 567 YIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGEKGVNVQRYKGLGEMNASQLWATTM 626

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +P+TR L RV I DA+ A+++F +LMGD+V  RR+FI+ ++     LDI
Sbjct: 627 DPETRVLKRVVIEDAAYANEIFEKLMGDDVTARRDFIKRHAKEVTNLDI 675


>gi|152973859|ref|YP_001373376.1| DNA gyrase subunit B [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022611|gb|ABS20381.1| DNA gyrase, B subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 640

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/589 (48%), Positives = 407/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 4   KEMQANSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVVIEEDDSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DRTGTVTRFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                +++D L  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+
Sbjct: 182 KETTVYDFDILATRMRELAFLNRNIKLTIEDKRENKQKKE-FHYEGGIKSYVEHLNRSKQ 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ + P+ ++G++D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I 
Sbjct: 241 PIHEEPVYVEGAKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  +
Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+
Sbjct: 421 PSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GT IG D FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 481 GTNIGGD-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           + + +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 540 FKVQQGKKIQYAYNEKELERILAELPAQPKPSIQRYKGLGEMNPAQLWE 588



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 142/367 (38%), Gaps = 31/367 (8%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525
             ++            G       +      K  I+ DAD +  G  +R  L      + 
Sbjct: 274 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 333

Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571
           P+    G           +     +      +++ +  ++   ++         +  +++
Sbjct: 334 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKK 393

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                  K  +  + L   + D    D  I + Y     +    A      + ++   + 
Sbjct: 394 ARELTRRKSALEVSSLPGKLADCSSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 453

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR-GVQEQFVLEGSSIFS 684
             + +    RL+ I    E     +        + DI   R  +  +     ++G+ I +
Sbjct: 454 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDISKARYHKVIIMTDADVDGAHIRT 513

Query: 685 ----FGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQ 737
               F  +Y R I  +         L  +  G KI+       L+ I +    +   S+Q
Sbjct: 514 LLLTFFYRYMRQIIEHGYVYIAQPPLFKVQQGKKIQYAYNEKELERILAELPAQPKPSIQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+ 
Sbjct: 574 RYKGLGEMNPAQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAK 633

Query: 798 PS-ALDI 803
               LDI
Sbjct: 634 YVKNLDI 640


>gi|190710547|gb|ACE95104.1| gyrase subunit B [Bacillus thuringiensis serovar alesti]
          Length = 627

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKRGHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 152/463 (32%), Gaps = 50/463 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R   ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKRGHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|190710581|gb|ACE95121.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
          Length = 627

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 289/632 (45%), Positives = 415/632 (65%), Gaps = 11/632 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
           +GK +QY  +++ LE  L       +         G ++   L         +D  ++  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWET-----TMDPEVRSL 591

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                +  IE      +   +  +    S+  
Sbjct: 592 LQVSLQDAIEADETFEILMGDKVEPRRNSIQE 623



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 152/463 (32%), Gaps = 50/463 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR  IQEN+  
Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNSIQENAKY 627


>gi|190710589|gb|ACE95125.1| gyrase subunit B [Bacillus thuringiensis serovar darmstadiensis]
          Length = 627

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYANHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/463 (19%), Positives = 154/463 (33%), Gaps = 50/463 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+              A      ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YANHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|190710551|gb|ACE95106.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
 gi|190710565|gb|ACE95113.1| gyrase subunit B [Bacillus thuringiensis serovar sumiyoshiensis]
 gi|190710591|gb|ACE95126.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
          Length = 627

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 153/463 (33%), Gaps = 50/463 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|226309593|ref|YP_002769487.1| DNA gyrase subunit B [Brevibacillus brevis NBRC 100599]
 gi|226092541|dbj|BAH40983.1| DNA gyrase subunit B [Brevibacillus brevis NBRC 100599]
          Length = 641

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 295/643 (45%), Positives = 421/643 (65%), Gaps = 10/643 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             ++++YDA  IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DNAIDE+L GY D 
Sbjct: 5   TTKDTNYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNAIDEALAGYCDE 63

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S +V+DNGRGIPT +H++ G S  E ++T LHAGGKF    YKVSGGLHGV
Sbjct: 64  ILVVIHPDNSVSVTDNGRGIPTGIHEKTGKSTVETVLTVLHAGGKFGGGGYKVSGGLHGV 123

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS W+++ +K+   +Y M F  G  D  L V G    +TGT+VTF P   IF+
Sbjct: 124 GSSVVNALSEWMEVEVKQNNQVYYMRFKVGAPDADLAVVGETE-ETGTKVTFKPDPTIFT 182

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F Y+ LQ R+REL+FLN  ++I+L D R    +E +  Y+GGI  FV YL+++++ 
Sbjct: 183 ETTVFEYEILQKRIRELAFLNKGLRITLKDTRPDHEKEESFHYEGGIIQFVEYLNKNREA 242

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    I  +G ++ + +++A+++ND Y  N+  F NNI   +GGTH +G ++ALTR I  
Sbjct: 243 LHDDVIYCEGEKEGLVVEVALQYNDTYVSNIYSFANNINTHEGGTHETGFKTALTRVIND 302

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K    K+   ++ GDD REG T+++S+K+ +P+F  QTK KL +SE RS+ ES   D
Sbjct: 303 YSRKFNFLKEKDPNLSGDDVREGITAIISVKIQEPQFEGQTKTKLGNSEARSITESVFGD 362

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             + ++EE+P  AK +V+K L AS  R+AAR+AR++TRRK  L++++LPGKLADCS +D 
Sbjct: 363 RFNTFMEENPGVAKKVVEKALMASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDA 422

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELF+VEGDSAGGSAK GR R  QAILPLRGK+LNVE+AR DK+L + EI  +ITALG
Sbjct: 423 SESELFIVEGDSAGGSAKMGRDRHFQAILPLRGKVLNVEKARLDKILGNNEIRAIITALG 482

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG+G+D FDI K RYHK++IMTDADVDG+HIRTLLLTFFFR M  LI  G++YI +PPLY
Sbjct: 483 TGVGED-FDITKARYHKVVIMTDADVDGSHIRTLLLTFFFRYMKQLIEAGYIYIAQPPLY 541

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I +GK+L Y  +++  ++ L       +         G ++ + L         +D  +
Sbjct: 542 SIKQGKTLHYAYNDKQRDEVLATLKAQPKPNVQRYKGLGEMNADQLWET-----TMDPEV 596

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +       +  ++  ++      +  +     +    AN  + 
Sbjct: 597 RTLLQVDLEDAMDADMVFETLMGDEVEPRREFIEQYAANVRDL 639



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 55/70 (78%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMNA QLWETT++P+ R+LL+V + DA  AD +F  LMGDEVEPRREFI++
Sbjct: 572 NVQRYKGLGEMNADQLWETTMDPEVRTLLQVDLEDAMDADMVFETLMGDEVEPRREFIEQ 631

Query: 795 NSLPS-ALDI 803
            +     LDI
Sbjct: 632 YAANVRDLDI 641


>gi|190710577|gb|ACE95119.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
          Length = 627

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDEGQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLP 798
           F  LMGD+VEPRR FIQEN+  
Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627


>gi|297582344|ref|YP_003698124.1| DNA gyrase subunit B [Bacillus selenitireducens MLS10]
 gi|297140801|gb|ADH97558.1| DNA gyrase, B subunit [Bacillus selenitireducens MLS10]
          Length = 637

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 295/591 (49%), Positives = 409/591 (69%), Gaps = 8/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  +   SYD   IQ+L+GL+AV+KRP MYIG T+ E GLHH+++E++DN+IDE++ G+
Sbjct: 1   MS--LDQQSYDESQIQVLEGLEAVRKRPGMYIGSTN-ERGLHHLVWEIVDNSIDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+  D + TV D+GRGIP  +H++ G  A EVIMT LHAGGKF    YKVSGGL
Sbjct: 58  CSHIWVTIEEDNTITVEDDGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALSS+L++ + +EG ++ +SF  G +   L V GS    TGT + F   + 
Sbjct: 118 HGVGASVVNALSSFLEVEVHKEGEVHYISFERGAVKEELNVIGSTE-KTGTLIRFKADNM 176

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    +++D L +RLRELSFLN  + I + DKR  +       Y+GGI +FV +L+R 
Sbjct: 177 IFTETTVYDFDVLANRLRELSFLNKGLTIEITDKREEDKSAKYF-YEGGISSFVEHLNRT 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L + PI I+  ++ I +++AM++ND +  N+  F NNI   +GGTH SG ++ALTR 
Sbjct: 236 KTALHEPPIFIESEKEGIQVEVAMQYNDSFASNLYSFANNINTHEGGTHESGFKTALTRV 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K++  ++IGDD REG T+++S+K+ +P+F  QTK KL +SE R++ +S 
Sbjct: 296 INDYARKNGLFKENDPNLIGDDVREGLTAIVSVKIENPQFEGQTKTKLGNSEARTITDSL 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + ++ ++ E+P  A+ IV+K + AS  RDAA++AR+LTRRK  L+++SLPGKLADCS 
Sbjct: 356 FTEHMAKFMAENPTVARQIVEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCST 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L++ EI  +IT
Sbjct: 416 KDASISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILANNEIRAIIT 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG++ FDI K RYHKIIIMTDADVDGAHIRTLLLTF +R M  LI  G++YI +P
Sbjct: 476 ALGTGIGEE-FDITKARYHKIIIMTDADVDGAHIRTLLLTFLYRYMRPLIEEGYIYIAQP 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PLY I +GK++ Y  +E+ +E  L   S S +         G ++   L  
Sbjct: 535 PLYQIKQGKAVHYAFNEKEMERILGELSASPKPGLQRYKGLGEMNPTQLWE 585



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 19/182 (10%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGS 687
             RL+ I   +E          G     DI   R  + +      ++G+ I +    F  
Sbjct: 458 KARLDKILANNEIRAIITALGTGIGEEFDITKARYHKIIIMTDADVDGAHIRTLLLTFLY 517

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-----LLDTIFSIGRKGISMQRYKGL 742
           +Y R                     K             +L  + +  + G+  QRYKGL
Sbjct: 518 RYMRPLIEEGYIYIAQPPLYQIKQGKAVHYAFNEKEMERILGELSASPKPGL--QRYKGL 575

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801
           GEMN +QLWETT++P TR+LL+V + DA  AD++F  LMGD VEPRR+FIQEN+     L
Sbjct: 576 GEMNPTQLWETTMDPATRTLLQVSLKDAMLADEVFETLMGDRVEPRRDFIQENAHYVKNL 635

Query: 802 DI 803
           DI
Sbjct: 636 DI 637


>gi|15639990|ref|NP_219443.1| DNA gyrase, subunit B (gyrB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026229|ref|YP_001934001.1| DNA gyrase, subunit B [Treponema pallidum subsp. pallidum SS14]
 gi|3913790|sp|O08399|GYRB_TREPA RecName: Full=DNA gyrase subunit B
 gi|2102700|gb|AAB66715.1| DNA gyrase subunit B [Treponema pallidum]
 gi|3323330|gb|AAC65954.1| DNA gyrase, subunit B (gyrB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018804|gb|ACD71422.1| DNA gyrase, subunit B [Treponema pallidum subsp. pallidum SS14]
 gi|291060363|gb|ADD73098.1| DNA gyrase, B subunit [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 637

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 282/641 (43%), Positives = 406/641 (63%), Gaps = 14/641 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A SI +L+GL+AV+KRP MYIG T G +GLHH++YEV+DN IDE++ GY D ITV L
Sbjct: 4   EYSASSITVLEGLEAVRKRPGMYIGST-GPNGLHHLVYEVVDNCIDEAMAGYCDRITVVL 62

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
                  V DNGRGIP D+H  EG+SA EV++T+LHAGGKF++KSYKVSGGLHGVGVSVV
Sbjct: 63  EQGNVVRVEDNGRGIPVDVHPHEGVSALEVVLTKLHAGGKFDKKSYKVSGGLHGVGVSVV 122

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALS W+++ + R+G  Y   F  G+   P+   G      GT + +     IF     +
Sbjct: 123 NALSLWVEVTVYRDGAEYYQKFNVGMPLAPVEKRG-VSEKRGTIIRWQADPSIFKETVAY 181

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++D L  RLREL+FLNS+V I L D+R    +++   ++GGI  FVSYL+R K  + + P
Sbjct: 182 DFDVLLTRLRELAFLNSTVVIQLRDERLATAKQVEFAFEGGIRHFVSYLNRGKSVVPERP 241

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + I+GS+ ++ +++A++++DGY ENV  F N+I  ++GGTHL G +SALTR    +++KS
Sbjct: 242 LYIEGSKSDVLVEVALQYHDGYTENVQSFVNDINTREGGTHLEGFKSALTRVANDFLKKS 301

Query: 308 FGSKKD---KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
               K    +  ++G+D R G T VLS+K+P+P+F  QTK KL +SEVR +V+S V + L
Sbjct: 302 PKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIVDSLVGERL 361

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + E++P     I++K +  +  R AARRA++  RRK  +D   LPGKLADCS +DP K
Sbjct: 362 TLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLPGKLADCSLKDPAK 421

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E+++VEGDSAGGSAK+GR  + QAILPL GK+LNVE+ R DK+L ++++  +I  LGTG
Sbjct: 422 CEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQPIIATLGTG 481

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           +G+D FD+ ++RYHK+IIM DADVDG+HIRTLLLTFFFR +P +I  G++Y+  PPLY I
Sbjct: 482 VGKD-FDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLAMPPLYRI 540

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
              K   YV  +   ++ L +      +        G +    L         ++ + + 
Sbjct: 541 AWSKKELYVYSDTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWET-----TMNPVRRK 595

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLAS-KLANRLN 643
                    +E   +      E  +     +    +  RL+
Sbjct: 596 MMQVVLSDAVEADRVFSTLMGEDVEPRRKFIEENAIYARLD 636



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    KL   +  +     K +  +      ++      V    +    
Sbjct: 454 MLNVEKTRLDKVLHNEKLQPIIATLGTGVGKDFDLTRIRYHKVIIMADADVDGSHIRTLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRY 739
             F F    + I +  +      +  +  +  ++ +       + + SIG+K G+++QRY
Sbjct: 514 LTFFFRYLPQIIEAGYVYLAMPPLYRIAWSKKELYVYSDTERDEALESIGKKSGVAVQRY 573

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEM+ +QLWETT+NP  R +++V ++DA +AD +FS LMG++VEPRR+FI+EN++ +
Sbjct: 574 KGLGEMDGTQLWETTMNPVRRKMMQVVLSDAVEADRVFSTLMGEDVEPRRKFIEENAIYA 633

Query: 800 ALDI 803
            LD+
Sbjct: 634 RLDV 637


>gi|145577967|gb|ABP82702.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           cereus]
          Length = 632

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP    ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGTQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKVLSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 150/449 (33%), Gaps = 51/449 (11%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY------ 605
              ++         +  +++       K  +  + L   + D    D  I + Y      
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 606 ---------PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
                      H +  +   +   + N E  +   V    ++   +  I       +   
Sbjct: 427 AGGSAKQGRDRHFQAIL--PLKGKIINVEKARLDKVLSNDEVRTIITAIGTNIGGDFDIE 484

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                 ++      V    +      F +    + I    I       L  I  G KI+ 
Sbjct: 485 KARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQY 543

Query: 717 TGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                 L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD
Sbjct: 544 AYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEAD 603

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + F  LMGD+VEPRR FIQEN+     LD
Sbjct: 604 ETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|331693904|ref|YP_004330143.1| DNA gyrase subunit B [Pseudonocardia dioxanivorans CB1190]
 gi|326948593|gb|AEA22290.1| DNA gyrase, B subunit [Pseudonocardia dioxanivorans CB1190]
          Length = 660

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 271/640 (42%), Positives = 387/640 (60%), Gaps = 26/640 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   + + Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GY
Sbjct: 1   MAAE-KKNGYSASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD + V L  DG  TV DNGRGIP  +H  E   A E+++T LHAGGKF+  SY VSGGL
Sbjct: 59  ADRVEVVLRPDGGVTVVDNGRGIPVGMHPVEKKPAVEMVLTMLHAGGKFDSDSYAVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS L + I  +G  +   +   +   PL V G+    TGT VTF    D
Sbjct: 119 HGVGVSVVNALSSRLDVDIDTDGFHWSQKYTRSVP-GPL-VKGAPTRATGTTVTFWADPD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------EPREITMFY 225
           IF    +N +T++ RL+E++FLN  + I L D+R+                + +E T  Y
Sbjct: 177 IFETTTYNVETVRRRLQEMAFLNKGLTIVLRDERNGDNGEAEEPDAEGYVAKIKEYTFHY 236

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             G+E FV++L++ K P+ +  +   G     ++++AM+WN GY E+V  F N I   +G
Sbjct: 237 PNGLEDFVAHLNKTKDPIHKKLVSFSGEAPGHALEVAMQWNSGYTESVYTFANTINTHEG 296

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y       K+   ++ GDD REG  +++S+K+ +P+F  QTK 
Sbjct: 297 GTHEEGFRAALTSTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKT 356

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++EV+S V+   N+ L+ W E +P EA+ IV K + ++  R AAR+AR+L RRK   
Sbjct: 357 KLGNTEVKSFVQRVSNEWLADWFERNPTEARTIVNKAVQSAQARMAARKARELVRRKSAG 416

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DI  LPGKLADC   DP +SE+++VEGDSAGGSAK GR    QAILP+RGKI+NVE+AR 
Sbjct: 417 DIGGLPGKLADCRSTDPSRSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKIINVEKARI 476

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           D++L + E+ ++ITALGTGI  D FD+ KLRYHKI++M DADVDG HIRTLLLT  FR M
Sbjct: 477 DRVLKNTEVQSIITALGTGI-HDEFDLAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFM 535

Query: 526 PSLIHNGFLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
             L+ +G +++ +PPLY I    RG   ++   +   +  +     + +     +     
Sbjct: 536 RPLVEHGHVFLAQPPLYKIKWGGRGAEPEFAYSDAERDGLIAAGRAAGKKLPKEEGVQRY 595

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                   ++     +  +   +    +  ++ A  +   
Sbjct: 596 KG---LGEMNAKELWETTMDPAHRVLLRVTLDDAATADEL 632



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 8/88 (9%)

Query: 722 LLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           L+    + G+K     G  +QRYKGLGEMNA +LWETT++P  R LLRV + DA+ AD+L
Sbjct: 575 LIAAGRAAGKKLPKEEG--VQRYKGLGEMNAKELWETTMDPAHRVLLRVTLDDAATADEL 632

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMG++VE RR FI  N+     LD+
Sbjct: 633 FSVLMGEDVESRRSFITRNAKDVRFLDV 660


>gi|310639477|ref|YP_003944235.1| DNA gyrase subunit b [Paenibacillus polymyxa SC2]
 gi|309244427|gb|ADO53994.1| DNA gyrase subunit B [Paenibacillus polymyxa SC2]
          Length = 636

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 303/591 (51%), Positives = 410/591 (69%), Gaps = 9/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  +   SYDA  IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE+L GY
Sbjct: 1   MS--MNQPSYDAGEIQVLEGLEAVRKRPGMYIGSTS-VKGLHHLVWEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ D S TV+DNGRGIP   H +   SA EV+MT LHAGGKF    YKVSGGL
Sbjct: 58  CNSIQVVVHKDNSITVTDNGRGIPVSEHAKMKKSALEVVMTVLHAGGKFGGGGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS + + +KR+G++YE  +  G     + V G    +TGT+ TF P   
Sbjct: 118 HGVGVSVVNALSSKMIVHVKRDGHVYEQEYHRGAPQYDVRVIGDTE-ETGTQTTFYPDEQ 176

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    ++YDTLQ R+REL+FLN  + ISL D+R+      T  Y+GGI  +V +L++ 
Sbjct: 177 IFTETTVYDYDTLQTRIRELAFLNKGIAISLTDERTG--ASDTFHYEGGISEYVQFLNQK 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++ L + PI ++GSRD I +++A+++ND Y EN+  F NNI   +GGTH SG +SALTR 
Sbjct: 235 REALHEQPIYVEGSRDMIQVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +SEVR +VES 
Sbjct: 295 INDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESL 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + L  +LEE+P  ++ +V K L A+  R+AAR+AR+LTRRK  L+I+SLPGKLADCS 
Sbjct: 355 FAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSS 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D   SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++LSS EI +++T
Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTGIG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +P
Sbjct: 475 AMGTGIG-DDFDITKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PL+ + R K ++Y   E   ++ +     + +         G ++   L  
Sbjct: 534 PLFKVERNKVVRYANSEAERDEIIKEFGENAKYNVQRYKGLGEMNATQLWE 584



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 13/207 (6%)

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                          +E+A +  + + +  + +  ++ + + +  +    +  K      
Sbjct: 440 RHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGIGDDFDITKARYHK------ 493

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
                ++      V    +      F +    K I +  I      +  +  N       
Sbjct: 494 -----VIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPPLFKVERNKVVRYAN 548

Query: 718 GPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 + I   G     ++QRYKGLGEMNA+QLWETT++P++R++L+V ++DA  AD L
Sbjct: 549 SEAERDEIIKEFGENAKYNVQRYKGLGEMNATQLWETTMDPESRTMLQVTVSDAMLADTL 608

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802
           F+ LMGD VEPRR+FIQE++     LD
Sbjct: 609 FNTLMGDNVEPRRDFIQEHAKYVKNLD 635


>gi|190710567|gb|ACE95114.1| gyrase subunit B [Bacillus thuringiensis serovar toumanoffi]
          Length = 627

 Score =  588 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSETFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 158/461 (34%), Gaps = 46/461 (9%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +++        +  +++       K  +  + L   + 
Sbjct: 348 TESVFSETFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|224532514|ref|ZP_03673139.1| DNA gyrase, B subunit [Borrelia burgdorferi WI91-23]
 gi|224512586|gb|EEF82962.1| DNA gyrase, B subunit [Borrelia burgdorferi WI91-23]
 gi|312149421|gb|ADQ29492.1| DNA gyrase, B subunit [Borrelia burgdorferi N40]
          Length = 634

 Score =  588 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 285/639 (44%), Positives = 417/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+G I+  +F  G+  + + V G +   TGT+VTFL  S+IF   D+N
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGVPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + IS+ DKR  + +    +++GGI++FV YL    K     P 
Sbjct: 180 FDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE+R +VE  V + L   +
Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE   I+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCASKNPLEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538

Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  +E+  E +L +    + +          G ++   L         +D   +   
Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    IE   I      +  +     +     N +N 
Sbjct: 594 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F      I +  I      +  +  +               LD+I +  R  IS+Q
Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627

Query: 798 PS-ALDI 803
               LD+
Sbjct: 628 NVINLDV 634


>gi|190710601|gb|ACE95131.1| gyrase subunit B [Bacillus thuringiensis serovar neoleonensis]
          Length = 627

 Score =  588 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 284/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 87/461 (18%), Positives = 158/461 (34%), Gaps = 46/461 (9%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +++        +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQ+N+  
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQKNAKY 627


>gi|255971553|ref|ZP_05422139.1| DNA gyrase subunit B [Enterococcus faecalis T1]
 gi|255962571|gb|EET95047.1| DNA gyrase subunit B [Enterococcus faecalis T1]
          Length = 649

 Score =  588 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 291/650 (44%), Positives = 419/650 (64%), Gaps = 9/650 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+KRP MYIG T GE GLHH+++E++DN+IDE
Sbjct: 1   MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP  +  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +R+ ++G +Y   +  G + + L V     +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF+    +++D L  R+REL+FLN  + IS+ D+R  +  +    Y+GGI+++V 
Sbjct: 179 IPDPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+ +K  +   PI I+G + +I+++++M++ DGYH N+L F NNI   +GGTH SG ++
Sbjct: 239 HLNANKDVIFPEPIFIEGEQQDITVEVSMQYADGYHSNILSFANNIHTYEGGTHESGFKT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           +LTR I  Y  K    K++   + G+D REG T+V+SIK PDP+F  QTK KL +SEVR+
Sbjct: 299 SLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRT 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           V +   ++  + +L E+P   K IV+K + AS  R AA+RAR++TRRKG L+I++LPGKL
Sbjct: 359 VTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G+D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLYG+ +GK++ YV+  +  E+ L               +      ++ +     
Sbjct: 538 YIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWE 597

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +D   +          IE   I  +   +  +     +        N 
Sbjct: 598 TTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QRYKGLGEM+  QLWETT++P+ R + RV + DA +AD +F  LMGD VEPRR FI+E
Sbjct: 580 SVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 640 NAHYVKNLDI 649


>gi|300862234|ref|ZP_07108314.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|300848759|gb|EFK76516.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11]
          Length = 649

 Score =  588 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 290/650 (44%), Positives = 419/650 (64%), Gaps = 9/650 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+KRP MYIG T GE GLHH+++E++DN+IDE
Sbjct: 1   MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP  +  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +R+ ++G +Y   +  G + + L V     +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF+    +++D L  R+REL+FLN  + IS+ D+R  +  +    Y+GGI+++V 
Sbjct: 179 IPDPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+ +K  +   P+ I+G + +I+++++M++ DGYH N+L F NNI   +GGTH SG ++
Sbjct: 239 HLNANKDVIFPEPVFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           +LTR I  Y  K    K++   + G+D REG T+V+SIK PDP+F  QTK KL +SEVR+
Sbjct: 299 SLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRT 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           V +   ++  + +L E+P   K IV+K + AS  R AA+RAR++TRRKG L+I++LPGKL
Sbjct: 359 VTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G+D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLYG+ +GK++ YV+  +  E+ L               +      ++ +     
Sbjct: 538 YIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWE 597

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +D   +          IE   I  +   +  +     +        N 
Sbjct: 598 TTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QRYKGLGEM+  QLWETT++P+ R + RV + DA +AD +F  LMGD VEPRR FI+E
Sbjct: 580 SVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 640 NAHYVKNLDI 649


>gi|190710553|gb|ACE95107.1| gyrase subunit B [Bacillus thuringiensis serovar kyushuensis]
          Length = 627

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 284/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 158/461 (34%), Gaps = 46/461 (9%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +++        +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|308066844|ref|YP_003868449.1| DNA gyrase subunit B [Paenibacillus polymyxa E681]
 gi|305856123|gb|ADM67911.1| DNA gyrase subunit B [Paenibacillus polymyxa E681]
          Length = 636

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 304/591 (51%), Positives = 411/591 (69%), Gaps = 9/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  +   SYDA  IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE+L GY
Sbjct: 1   MS--MNQPSYDAGEIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEVVDNSIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S TV+DNGRGIP   H +   SA EV+MT LHAGGKF    YKVSGGL
Sbjct: 58  CDSIQVVVHEDNSVTVTDNGRGIPVSEHAKMKKSALEVVMTVLHAGGKFGGGGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS + + +KR+G++YE  +  G     + V G   ++TGT+ TF P   
Sbjct: 118 HGVGVSVVNALSSKMIVHVKRDGHLYEQEYHRGAPQYDVRVIGDT-DETGTQTTFYPDDQ 176

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    ++YDTLQ R+REL+FLN  + ISL D+R+      T  Y+GGI  +V +L++ 
Sbjct: 177 IFTETTVYDYDTLQTRIRELAFLNKGIAISLTDERTG--ASDTFHYEGGISEYVQFLNQK 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++ L + PI ++GSRD I +++A+++ND Y EN+  F NNI   +GGTH SG +SALTR 
Sbjct: 235 REALHEQPIYVEGSRDMIQVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +SEVR +VES 
Sbjct: 295 INDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESL 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + L  +LEE+P  ++ +V K L A+  R+AAR+AR+LTRRK  L+I+SLPGKLADCS 
Sbjct: 355 FAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSS 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D   SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++LSS EI +++T
Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTGIG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +P
Sbjct: 475 AMGTGIG-DDFDIAKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PL+ + R K ++Y   E   ++ +     + +         G ++   L  
Sbjct: 534 PLFKVERNKVVRYANSEAERDEIIREFGENAKYNVQRYKGLGEMNATQLWE 584



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 13/207 (6%)

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                          +E+A +  + + +  + +  ++ + + +  +    +  K      
Sbjct: 440 RHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGIGDDFDIAKARYHK------ 493

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
                ++      V    +      F +    K I +  I      +  +  N       
Sbjct: 494 -----VIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPPLFKVERNKVVRYAN 548

Query: 718 GPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 + I   G     ++QRYKGLGEMNA+QLWETT++P++R++L+V ++DA  AD L
Sbjct: 549 SEAERDEIIREFGENAKYNVQRYKGLGEMNATQLWETTMDPESRTMLQVTVSDAMLADTL 608

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802
           F+ LMGD VEPRR+FIQE++     LD
Sbjct: 609 FNTLMGDNVEPRRDFIQEHAKYVKNLD 635


>gi|227518104|ref|ZP_03948153.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX0104]
 gi|227555689|ref|ZP_03985736.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22]
 gi|229547125|ref|ZP_04435850.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|229550695|ref|ZP_04439420.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|255974526|ref|ZP_05425112.1| subunit B [Enterococcus faecalis T2]
 gi|256618523|ref|ZP_05475369.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200]
 gi|256761858|ref|ZP_05502438.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3]
 gi|256854985|ref|ZP_05560346.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8]
 gi|256957011|ref|ZP_05561182.1| DNA gyrase subunit B [Enterococcus faecalis DS5]
 gi|256960820|ref|ZP_05564991.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96]
 gi|256963987|ref|ZP_05568158.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704]
 gi|257078688|ref|ZP_05573049.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1]
 gi|257081351|ref|ZP_05575712.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol]
 gi|257084008|ref|ZP_05578369.1| DNA gyrase subunit B [Enterococcus faecalis Fly1]
 gi|257087838|ref|ZP_05582199.1| DNA gyrase subunit B [Enterococcus faecalis D6]
 gi|257088490|ref|ZP_05582851.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188]
 gi|257417430|ref|ZP_05594424.1| DNA gyrase subunit B [Enterococcus faecalis AR01/DG]
 gi|257421347|ref|ZP_05598337.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98]
 gi|293382658|ref|ZP_06628586.1| DNA gyrase, B subunit [Enterococcus faecalis R712]
 gi|293387930|ref|ZP_06632466.1| DNA gyrase, B subunit [Enterococcus faecalis S613]
 gi|294781253|ref|ZP_06746600.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1]
 gi|307268921|ref|ZP_07550285.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248]
 gi|307274016|ref|ZP_07555226.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855]
 gi|307276495|ref|ZP_07557615.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134]
 gi|307284063|ref|ZP_07564233.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860]
 gi|307287177|ref|ZP_07567248.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109]
 gi|307296594|ref|ZP_07576414.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411]
 gi|312901292|ref|ZP_07760575.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470]
 gi|312903111|ref|ZP_07762292.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635]
 gi|312908810|ref|ZP_07767749.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512]
 gi|312951716|ref|ZP_07770610.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102]
 gi|312979548|ref|ZP_07791230.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516]
 gi|15982567|dbj|BAB69478.1| DNA gyrase B subunit [Enterococcus faecalis]
 gi|227074438|gb|EEI12401.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX0104]
 gi|227175199|gb|EEI56171.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22]
 gi|229304128|gb|EEN70124.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|229307707|gb|EEN73694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|255967398|gb|EET98020.1| subunit B [Enterococcus faecalis T2]
 gi|256598050|gb|EEU17226.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200]
 gi|256683109|gb|EEU22804.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3]
 gi|256709498|gb|EEU24545.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8]
 gi|256947507|gb|EEU64139.1| DNA gyrase subunit B [Enterococcus faecalis DS5]
 gi|256951316|gb|EEU67948.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96]
 gi|256954483|gb|EEU71115.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704]
 gi|256986718|gb|EEU74020.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1]
 gi|256989381|gb|EEU76683.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol]
 gi|256992038|gb|EEU79340.1| DNA gyrase subunit B [Enterococcus faecalis Fly1]
 gi|256995868|gb|EEU83170.1| DNA gyrase subunit B [Enterococcus faecalis D6]
 gi|256997302|gb|EEU83822.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188]
 gi|257159258|gb|EEU89218.1| DNA gyrase subunit B [Enterococcus faecalis ARO1/DG]
 gi|257163171|gb|EEU93131.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98]
 gi|291079964|gb|EFE17328.1| DNA gyrase, B subunit [Enterococcus faecalis R712]
 gi|291082667|gb|EFE19630.1| DNA gyrase, B subunit [Enterococcus faecalis S613]
 gi|294451716|gb|EFG20171.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1]
 gi|295112344|emb|CBL30981.1| DNA gyrase subunit B [Enterococcus sp. 7L76]
 gi|306495930|gb|EFM65518.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411]
 gi|306501775|gb|EFM71066.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109]
 gi|306503434|gb|EFM72683.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860]
 gi|306506822|gb|EFM75972.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134]
 gi|306509324|gb|EFM78384.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855]
 gi|306514729|gb|EFM83280.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248]
 gi|310625248|gb|EFQ08531.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512]
 gi|310630289|gb|EFQ13572.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102]
 gi|310633502|gb|EFQ16785.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635]
 gi|311287730|gb|EFQ66286.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516]
 gi|311291669|gb|EFQ70225.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470]
 gi|315026673|gb|EFT38605.1| DNA gyrase, B subunit [Enterococcus faecalis TX2137]
 gi|315030118|gb|EFT42050.1| DNA gyrase, B subunit [Enterococcus faecalis TX4000]
 gi|315033552|gb|EFT45484.1| DNA gyrase, B subunit [Enterococcus faecalis TX0017]
 gi|315036375|gb|EFT48307.1| DNA gyrase, B subunit [Enterococcus faecalis TX0027]
 gi|315143591|gb|EFT87607.1| DNA gyrase, B subunit [Enterococcus faecalis TX2141]
 gi|315148271|gb|EFT92287.1| DNA gyrase, B subunit [Enterococcus faecalis TX4244]
 gi|315151295|gb|EFT95311.1| DNA gyrase, B subunit [Enterococcus faecalis TX0012]
 gi|315153721|gb|EFT97737.1| DNA gyrase, B subunit [Enterococcus faecalis TX0031]
 gi|315155119|gb|EFT99135.1| DNA gyrase, B subunit [Enterococcus faecalis TX0043]
 gi|315158751|gb|EFU02768.1| DNA gyrase, B subunit [Enterococcus faecalis TX0312]
 gi|315163335|gb|EFU07352.1| DNA gyrase, B subunit [Enterococcus faecalis TX0645]
 gi|315165723|gb|EFU09740.1| DNA gyrase, B subunit [Enterococcus faecalis TX1302]
 gi|315168224|gb|EFU12241.1| DNA gyrase, B subunit [Enterococcus faecalis TX1341]
 gi|315170508|gb|EFU14525.1| DNA gyrase, B subunit [Enterococcus faecalis TX1342]
 gi|315174178|gb|EFU18195.1| DNA gyrase, B subunit [Enterococcus faecalis TX1346]
 gi|315573987|gb|EFU86178.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309B]
 gi|315578843|gb|EFU91034.1| DNA gyrase, B subunit [Enterococcus faecalis TX0630]
 gi|315581938|gb|EFU94129.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309A]
 gi|323479244|gb|ADX78683.1| DNA gyrase, B subunit [Enterococcus faecalis 62]
 gi|327533858|gb|AEA92692.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
           faecalis OG1RF]
 gi|329576322|gb|EGG57837.1| DNA gyrase, B subunit [Enterococcus faecalis TX1467]
          Length = 649

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 291/650 (44%), Positives = 419/650 (64%), Gaps = 9/650 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+KRP MYIG T GE GLHH+++E++DN+IDE
Sbjct: 1   MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP  +  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +R+ ++G +Y   +  G + + L V     +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF+    +++D L  R+REL+FLN  + IS+ D+R  +  +    Y+GGI+++V 
Sbjct: 179 IPDPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+ +K  +   PI I+G + +I+++++M++ DGYH N+L F NNI   +GGTH SG ++
Sbjct: 239 HLNANKDVIFPEPIFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           +LTR I  Y  K    K++   + G+D REG T+V+SIK PDP+F  QTK KL +SEVR+
Sbjct: 299 SLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRT 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           V +   ++  + +L E+P   K IV+K + AS  R AA+RAR++TRRKG L+I++LPGKL
Sbjct: 359 VTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G+D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLYG+ +GK++ YV+  +  E+ L               +      ++ +     
Sbjct: 538 YIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWE 597

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +D   +          IE   I  +   +  +     +        N 
Sbjct: 598 TTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QRYKGLGEM+  QLWETT++P+ R + RV + DA +AD +F  LMGD VEPRR FI+E
Sbjct: 580 SVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 640 NAHYVKNLDI 649


>gi|289596495|ref|YP_003483191.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
 gi|289534282|gb|ADD08629.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
          Length = 644

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 298/653 (45%), Positives = 400/653 (61%), Gaps = 28/653 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S YDA +IQIL+   AV+KRP MYIG TD E GLHH+IYEV+DN+IDE+L GY   I V 
Sbjct: 2   SKYDAKAIQILEDAQAVRKRPGMYIGSTD-ERGLHHLIYEVVDNSIDEALAGYCSRINVI 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ DGS +V D+GRGIP D+H E+G SA EV+MT LHAG KF++K+Y+++GGLHGVG+ V
Sbjct: 61  IHKDGSVSVEDDGRGIPVDMHPEKGKSALEVVMTVLHAGAKFDKKAYRITGGLHGVGIHV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA----------------GNDTGT 171
           VN LS WLK  IKR+G IY   +  G     + V G                      GT
Sbjct: 121 VNFLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEKFKYSRGT 180

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P ++IF   +F Y  ++ +LR+L+FLN  ++I+L D+RS +       Y GGI  
Sbjct: 181 YIRFKPDAEIFETTEFKYSIVKKKLRDLAFLNRGIEITLEDERSGKK--EVFKYDGGIVE 238

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+    P+ +  +  +  +D I ++ AM++ND   EN+L F N I   +GGTH+SG
Sbjct: 239 FVKFLNEGYNPIHRDVVYGKDEQDGIIVEFAMQYNDSTSENLLAFVNTIHTVEGGTHVSG 298

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALT+ I  + +     K    S+ G+D REG T+V+ +K P+P+F  QTK KL +SE
Sbjct: 299 FRSALTKVINDFAKSRNLLKGID-SLQGEDVREGLTAVIHVKHPNPQFEGQTKAKLGNSE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ VV S VN  LS + EEHP  A  IV K + A+  R AAR+AR+L RRKG L+   LP
Sbjct: 358 VKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYLESLDLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCSE DP+++ELF+VEGDSAGGSAKQ R R  QAILPLRGKILNVE+AR DK+  +
Sbjct: 418 GKLADCSEEDPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARIDKVFKN 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            EI  LI+A+GTG+ ++ FD +KLRY KIIIMTDADVDGAHIRTLLLTFF+R MP LI  
Sbjct: 478 NEIRALISAIGTGV-REDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMPELIEK 536

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI + PLY I +GK++ YV  +E  E     + L           G ++   L +  
Sbjct: 537 GHIYIAQAPLYRIQKGKNIYYVYSDEEKE--EKLRELGNASVQRFKGLGEMNPQQLWDT- 593

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                ++   +       +   E   +  +   E        +       +N 
Sbjct: 594 ----TMNPETRRLIRVTIEDAAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 642



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 5/198 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   V   +++   ++ I     + +  S      ++  
Sbjct: 451 RHFQAIL--PLRGKILNVEKARIDKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIM 508

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I      +  +    +   +       + +
Sbjct: 509 TDADVDGAHIRTLLLTFFYRYMPELIEKGHIYIAQAPLYRIQKGKNIYYVYSDEEKEEKL 568

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             +G    S+QR+KGLGEMN  QLW+TT+NP+TR L+RV I DA++AD LFS LMG++V 
Sbjct: 569 RELG--NASVQRFKGLGEMNPQQLWDTTMNPETRRLIRVTIEDAAEADRLFSILMGEQVG 626

Query: 787 PRREFIQENSLPS-ALDI 803
           PRREFI +++     +DI
Sbjct: 627 PRREFIIQHAKEVMNIDI 644


>gi|145577983|gb|ABP82710.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar sotto]
          Length = 632

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIARPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 92/468 (19%), Positives = 155/468 (33%), Gaps = 51/468 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 526 Y-IARPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|51598690|ref|YP_072878.1| DNA gyrase, subunit B [Borrelia garinii PBi]
 gi|51573261|gb|AAU07286.1| DNA gyrase, subunit B [Borrelia garinii PBi]
          Length = 634

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 285/639 (44%), Positives = 419/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVVDNSIDEALAGFCDRIDVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+G I+  +F  GI  + + V G +   TGT+VTFL  S+IF   D+N
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + I++ DKR+ + +    +++GGI++FV YL    K       
Sbjct: 180 FDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSESY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE++ +VE  V + L   +
Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYEHLLEII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE  II++K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 SSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCASKNPSEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHK+IIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 480 -FDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  DE+  E +L +        +F       G ++   L         +D   +   
Sbjct: 539 RIYYFYDEKEKEKFLDSIETKNRNNIFLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    IE   I      +  +     +     N +N 
Sbjct: 594 LINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F      I +  I      +  +  +               LD+I +  R  I +Q
Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYDEKEKEKFLDSIETKNRNNIFLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627

Query: 798 PS-ALDI 803
               LD+
Sbjct: 628 NVINLDV 634


>gi|190710611|gb|ACE95136.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
          Length = 627

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 284/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L   G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKAIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 153/463 (33%), Gaps = 50/463 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|300088450|ref|YP_003758972.1| DNA gyrase subunit B [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528183|gb|ADJ26651.1| DNA gyrase, B subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 641

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 298/588 (50%), Positives = 404/588 (68%), Gaps = 5/588 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +DN   SSY A+ IQ+L G +AV+KRP MYIG TD   GLHH++YEV+ N++DES+ G+ 
Sbjct: 7   TDNPGASSYTAEDIQVLGGREAVRKRPGMYIGSTDY-RGLHHLVYEVVYNSVDESMAGFC 65

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V ++ D S +V DNGRGIP D+ K+ G+SA E +MT LHAG KF  K+Y+VSGGLH
Sbjct: 66  DKINVIIHGDESISVEDNGRGIPVDIQKKTGVSALETVMTVLHAGAKFGGKTYQVSGGLH 125

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS W+ + ++R+G +Y   +  GI + P+ V G A   TGT  TF   S I
Sbjct: 126 GVGASVVNALSEWVTVDVRRDGKLYRQQYKEGIPEAPVAVVGEA-CGTGTTTTFKFDSKI 184

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    +++ TL  R+RE+++LN  ++IS+ D+R+ + +      +GGI  FV +L+ ++ 
Sbjct: 185 FDDATYDFKTLAERMREIAYLNKGLEISITDRRTDKEQTYYF--EGGITGFVRHLNHNRN 242

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + + PI I    D+  +++A+++NDG+ E    F N I  +DGGTHL+G RSALTR I 
Sbjct: 243 TIHRLPIAIYRKVDDCMVEVALQYNDGFSETNFSFANCINTQDGGTHLTGFRSALTRVIN 302

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            YV K+   K    S++GDDCREG  S++S+K+P+P+F  QTK KL ++E++S+VES V 
Sbjct: 303 DYVYKNKLVKDSDPSIMGDDCREGMVSIVSVKLPEPQFEGQTKGKLGNAEMKSMVESVVV 362

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D L+ + EEHP EAK I+ KVL ++  RDAAR+ARDL  +K  LD  SLPGKLA+CSE++
Sbjct: 363 DQLALYFEEHPDEAKKIIDKVLTSARARDAARKARDLIIKKNSLDGGSLPGKLAECSEKE 422

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P   ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A  DKMLS +EI  +ITAL
Sbjct: 423 PSLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKAAPDKMLSHEEIRAIITAL 482

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GI  D FD  KLRYH++++MTDADVDG+HIRTLLLTFFFR M  LI NG LYI +PPL
Sbjct: 483 GAGI-DDDFDFGKLRYHRVVMMTDADVDGSHIRTLLLTFFFRHMSKLITNGGLYIAQPPL 541

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           Y + +G++ ++V  +   ++ L                G +S   L +
Sbjct: 542 YRVKQGQNERWVFSDAEKDEALKEFKGKSVDVQRYKGLGEMSAEQLWS 589



 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 12/201 (5%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A    + + E  + I  +L + + +  +F   +  +           +
Sbjct: 452 LPLRGKILNVEKAAPDKMLSHEEIRAIITALGAGIDDDFDFGKLRYHR-----------V 500

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      V    +      F F    K I +  +      +  +    ++  +       
Sbjct: 501 VMMTDADVDGSHIRTLLLTFFFRHMSKLITNGGLYIAQPPLYRVKQGQNERWVFSDAEKD 560

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           + +     K + +QRYKGLGEM+A QLW TT+NP TR++L V+I DA+ AD  F+ LMGD
Sbjct: 561 EALKEFKGKSVDVQRYKGLGEMSAEQLWSTTMNPATRTMLTVEIEDAAHADATFNLLMGD 620

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +V PR+ FIQ ++     LDI
Sbjct: 621 QVPPRKAFIQAHAQQVKNLDI 641


>gi|166032886|ref|ZP_02235715.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC
           27755]
 gi|166027243|gb|EDR46000.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC
           27755]
          Length = 643

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 299/591 (50%), Positives = 397/591 (67%), Gaps = 4/591 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+
Sbjct: 1   MATEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D S TV+DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGL
Sbjct: 60  CDTIHVTINPDNSVTVTDNGRGIPVGINHKSGLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I  EG +Y   +  G +   L V G      TGT+VTFLP  
Sbjct: 120 HGVGASVVNALSVWLEVEICHEGKVYRQRYERGKVAKKLEVIGECEPGKTGTKVTFLPDG 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    F+Y  LQ R RE++FL   ++I L D+R  EP E T  Y+GGI+ FV YL+R 
Sbjct: 180 EIFETTIFDYSILQQRFREMAFLTKGLKIVLRDERPQEPIEKTFHYEGGIKEFVEYLNRS 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             PL +  I  +G  +N+S+++AM+ ND Y+EN   F NNI   +GGTH+ G R+ALT+ 
Sbjct: 240 TTPLYEQIIYCEGIVNNVSVEVAMQHNDSYNENSYGFVNNITTPEGGTHIVGFRNALTKT 299

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
              Y  K+   K ++ ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V++ 
Sbjct: 300 FNDYARKNKLLKDNEPNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNV 359

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L  +LE++P  AK+ V+K + A   R+AAR+ARDLTRRK  LD  SLPGKLADCS+
Sbjct: 360 VSEQLQIFLEQNPQVAKVTVEKSVMAQRAREAARKARDLTRRKSALDGMSLPGKLADCSD 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++P+K E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR D++  + EI  +IT
Sbjct: 420 KNPEKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDRIYGNAEIKAMIT 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +P
Sbjct: 480 AFGTGIHED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQP 538

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PLY + R K + Y   +E L+  L                 G +    L +
Sbjct: 539 PLYKLERNKKVWYAYSDEELDSILQEVGRDNNNKIQRYKGLGEMDAEQLWD 589



 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G   + DI   R  + +      ++G+ I +    +  R   + I+E Y       L  
Sbjct: 483 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQPPLYK 542

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        LD+I     +  +  +QRYKGLGEM+A QLW+TT++P+ R LLRV
Sbjct: 543 LERNKKVWYAYSDEELDSILQEVGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEHRVLLRV 602

Query: 766 KITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + D  AS+ D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 603 TMDDETASELDLTFTTLMGDKVEPRREFIEENAQYVQNLDI 643


>gi|78707349|gb|ABB46480.1| DNA gyrase subunit B [Acholeplasma granularum]
 gi|78707351|gb|ABB46481.1| DNA gyrase subunit B [Acholeplasma granularum]
 gi|78707353|gb|ABB46482.1| DNA gyrase subunit B [Acholeplasma granularum]
          Length = 587

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 272/580 (46%), Positives = 379/580 (65%), Gaps = 6/580 (1%)

Query: 24  VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83
           VKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD I + +       V+DNGRGI
Sbjct: 1   VKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYADEINIEILKGNIVRVTDNGRGI 59

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143
           P D+H + G  A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS +  + I ++G
Sbjct: 60  PVDIHPKTGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEYFIVEIHKDG 119

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            IYE  +  GI    L   G     +GT +TFL    IF+    +N +TL++R+++L+FL
Sbjct: 120 TIYEQRYERGIPAYDLKTIG-TTEKSGTVITFLADPKIFTETTVYNLETLKNRIQQLAFL 178

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           N  +++ L D R  EP   +  Y+GGI  +V +L++ K  +    I I   +D I+++LA
Sbjct: 179 NKGLKLHLTDSRPDEPIAESFHYEGGIVEYVKFLNQSKSKIHPDIIYIDKEQDGITVELA 238

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           +++ D Y  N+  FTNNI   +GG H  G + ALTR I+ Y +          S+ G+D 
Sbjct: 239 LQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMK--KDDSISGEDT 296

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+++S+K P+P+F  QTK KL + EVR++     ++ +  +L E+P +AK+IV+K+
Sbjct: 297 REGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAIERFLLENPQQAKMIVEKI 356

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           L A+  R AAR+A++LTRRK  LD      KLADC  +DP+KSE+++VEGDSAGGSAKQG
Sbjct: 357 LLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGSAKQG 416

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R  E QAI+PLRGK+LNVE+AR DKMLS++EI  LI A+GTGI  D FDI K RYHKI+I
Sbjct: 417 RDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGI-ADEFDITKARYHKIVI 475

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDGAHIRTLLLTF FR M  LI  G++Y  +PPLY ++ G++ +Y   +E L + 
Sbjct: 476 MTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNEKYAYTDEELNEI 535

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           +        I+ +     + ++      +D A +    IK
Sbjct: 536 VSGIETKPSIQRYKGLGEMNAEQLWDTTMDPAKRTLLQIK 575



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSL 707
            G  +  DI   R  + V      ++G+ I +    +  R     I+  Y+      L  
Sbjct: 457 TGIADEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 516

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           +  G   K       L+ I S      S+QRYKGLGEMNA QLW+TT++P  R+LL++K+
Sbjct: 517 VSWGRNEKYAYTDEELNEIVSGIETKPSIQRYKGLGEMNAEQLWDTTMDPAKRTLLQIKL 576

Query: 768 TDASQADDLFS 778
            DA +AD +FS
Sbjct: 577 EDAIEADQVFS 587


>gi|170760652|ref|YP_001785341.1| DNA gyrase subunit B [Clostridium botulinum A3 str. Loch Maree]
 gi|169407641|gb|ACA56052.1| DNA gyrase, B subunit [Clostridium botulinum A3 str. Loch Maree]
          Length = 637

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 301/591 (50%), Positives = 404/591 (68%), Gaps = 8/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS       YD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+
Sbjct: 1   MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV D+GRG+P  +H +    A EVIMT LHAGGKF    YKVSGGL
Sbjct: 59  CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS   ++ ++REG+I++  F  GI    L + G    D GT++ F P  +
Sbjct: 119 HGVGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTE-DHGTKIYFKPDIE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F YDTL  RLREL+FLN  ++ISL D+R  +       Y+GG+ +FV YL+R+K
Sbjct: 178 IFDELEFEYDTLAQRLRELAFLNKGIKISLTDERYDKK--EMFHYEGGLRSFVLYLNRNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L Q PI +  ++D   +++AM++NDGY EN+  F NNI   +GGTHL+G +SALTR I
Sbjct: 236 EKLHQQPIYVDKNKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K   +++ GDD REG T+V+S+K+ DP+F  QTK KL +SEVR +V++ V
Sbjct: 296 NDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + + ++LEE+P   KII++K L AS  R+AA+RAR+LTRRK VL+  SLPGKLADCS +
Sbjct: 356 GESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI  +ITA
Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG++ FDI+K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  LI  G +YI +PP
Sbjct: 476 FGAGIGKE-FDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           LY I + K   YV  +  L++ L+     +           G ++   L +
Sbjct: 535 LYRIFKAKKEIYVYSDPELDEALLELGGKDTNTNIQRYKGLGEMNPEQLWD 585



 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +        K +       + ++      V    +    
Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F +    + I    +      +  +     +I +     L + +  +G K    ++QR
Sbjct: 512 LTFFYRYMKELIEEGHVYIAQPPLYRIFKAKKEIYVYSDPELDEALLELGGKDTNTNIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEMN  QLW+TT+NP+ R+LL+V I DA  AD++F+ LMG +VEPRREFI++N+  
Sbjct: 572 YKGLGEMNPEQLWDTTMNPEHRTLLQVTIEDAMAADEIFTILMGTKVEPRREFIEDNADK 631

Query: 798 PSALDI 803
              LDI
Sbjct: 632 VVNLDI 637


>gi|153939432|ref|YP_001389375.1| DNA gyrase subunit B [Clostridium botulinum F str. Langeland]
 gi|152935328|gb|ABS40826.1| DNA gyrase, B subunit [Clostridium botulinum F str. Langeland]
 gi|295317482|gb|ADF97859.1| DNA gyrase, B subunit [Clostridium botulinum F str. 230613]
          Length = 637

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 301/591 (50%), Positives = 402/591 (68%), Gaps = 8/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS       YD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+
Sbjct: 1   MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV D+GRG+P  +H +    A EVIMT LHAGGKF    YKVSGGL
Sbjct: 59  CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS   ++ ++REG+I++  F  GI    L + G    D GT++ F P  +
Sbjct: 119 HGVGASVVNALSEQCEVEVRREGHIWKQRFERGITKTGLDIVGDTE-DHGTKIYFKPDIE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F YDTL  RLREL+FLN  ++ISL D+R  +       Y+GG+ +FV YL+R+K
Sbjct: 178 IFDELEFEYDTLAQRLRELAFLNKGIKISLTDERYDKK--EMFHYEGGLRSFVLYLNRNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L Q PI +  ++D   +++AM++NDGY EN+  F NNI   +GGTHL+G +SALTR I
Sbjct: 236 EKLHQQPIYVDKNKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K   +++ GDD REG T+V+S+K+ DP+F  QTK KL +SEVR +V++ V
Sbjct: 296 NDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + + ++LEE+P   KII++K L AS  R+AA+RAR+LTRRK VL+  SLPGKLADCS +
Sbjct: 356 GESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI  +ITA
Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG++ FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  LI  G +YI +PP
Sbjct: 476 FGAGIGKE-FDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           LY I + K   YV  +  L+  L+     +           G ++   L +
Sbjct: 535 LYRIFKAKKEIYVYSDPELDAALLELGGKDTNTNIQRYKGLGEMNPEQLWD 585



 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +        K +       + ++      V    +    
Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFDIEKIRYNRIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F +    + I    +      +  +     +I +     L   +  +G K    ++QR
Sbjct: 512 LTFFYRYMKELIEEGHVYIAQPPLYRIFKAKKEIYVYSDPELDAALLELGGKDTNTNIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEMN  QLW+TT++P+ R+LL+V I DA  AD++F+ LMG +VEPRREFI+ N+  
Sbjct: 572 YKGLGEMNPEQLWDTTMDPEHRTLLQVTIEDAMVADEIFTILMGTKVEPRREFIENNADK 631

Query: 798 PSALDI 803
              LDI
Sbjct: 632 VVNLDI 637


>gi|2338752|gb|AAB67237.1| DNA gyrase subunit B [Borrelia burgdorferi]
          Length = 634

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/639 (44%), Positives = 417/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+G I+  +F  GI  + + V G +   TGT+VTFL  S+IF   D+N
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + IS+ DKR  + +    +++GGI++FV YL    K     P 
Sbjct: 180 FDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE+R +VE  V + L   +
Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE   I+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538

Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  +E+  E +L +    + +          G ++   L         +D   +   
Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    IE   I      +  +     +     N +N 
Sbjct: 594 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F      I +  I      +  +  +               LD+I +  R  IS+Q
Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627

Query: 798 PS-ALDI 803
               LD+
Sbjct: 628 NVINLDV 634


>gi|260890953|ref|ZP_05902216.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254]
 gi|260859506|gb|EEX74006.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254]
          Length = 660

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 260/610 (42%), Positives = 377/610 (61%), Gaps = 30/610 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++Y A++I +L+GL+AV+KRP MYIG T    GLHH+++E++DN++DE+L G  D ITV
Sbjct: 2   DNNYGAEAITVLEGLEAVRKRPGMYIGSTSA-RGLHHLVWEIVDNSVDEALAGICDKITV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +       VSDNGRGIP  +H + G S  EV++T LHAGGKF+  +YKVSGGLHGVGVS
Sbjct: 61  KILEGNIIEVSDNGRGIPVGMH-KTGKSTLEVVLTVLHAGGKFDNDNYKVSGGLHGVGVS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQ 185
           VVNALS WL+  + R+G I+  ++  G+  +P+   G A + T GT V F    +IF   
Sbjct: 120 VVNALSEWLEATVTRDGKIFRQTYERGVPTSPVEEIGVADDGTHGTVVRFKADDEIFETT 179

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-ITMFYKGGIEAFVSYL-------- 236
            ++Y  L+ RL+EL++LN  ++I L D+R+ E  +     ++GGI+ F++ +        
Sbjct: 180 VYDYSVLESRLKELAYLNKGLKIELADERNAENVKAEEFLFEGGIKDFLNEIIDEEKIID 239

Query: 237 ---DRHKKPLMQSPIRIQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIP 281
                     ++    ++                 + +++AM +     E V  F NNI 
Sbjct: 240 DVIYMADTMQIEEAKEVEAEDENGNTVIKQRGAKFVEVEIAMNYTTSQRETVYSFVNNIN 299

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH+SG R+ALTR I    ++    K    +  G D REG   V+S+K+P+P+F  
Sbjct: 300 THEGGTHVSGFRTALTRTINDIAKQMNLIKDKNGTFQGTDVREGLVCVISVKIPEPQFEG 359

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SEV  +V + V   L  +LE+HP  A+ I++K+  +   R+AA++AR+L  R
Sbjct: 360 QTKTKLGNSEVTGIVSNIVGSNLKFYLEDHPKAAEKIIEKMAMSKRAREAAKKARELVLR 419

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  L++ SLPGKLADCS +DP +SE+F+VEG+SAGGSAKQGR R  QAILPLRGKILNVE
Sbjct: 420 KNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKILNVE 479

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           ++   K L + EI  +ITA G G G++  D+ KLRYHKI+IMTDADVDGAHIRTL+LTFF
Sbjct: 480 KSGVHKALENAEIRAMITAFGAGFGEEM-DLKKLRYHKIVIMTDADVDGAHIRTLMLTFF 538

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSK 579
           +R +  LI+ G++YI +PPLY I  GK+++Y   ++ ++                     
Sbjct: 539 YRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQVTRVLEGEGRKYTIQRYKGL 598

Query: 580 GVISKNDLRN 589
           G ++   L  
Sbjct: 599 GEMNPEQLWE 608



 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 46/79 (58%), Positives = 61/79 (77%), Gaps = 2/79 (2%)

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           +   GRK  ++QRYKGLGEMN  QLWETTL+P+ R+LL+V + DAS AD +F+ LMGD+V
Sbjct: 583 LEGEGRK-YTIQRYKGLGEMNPEQLWETTLDPEVRTLLKVSMEDASYADKMFNILMGDKV 641

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRR+FI++N+     LDI
Sbjct: 642 EPRRKFIEDNANYVRNLDI 660


>gi|190710609|gb|ACE95135.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
          Length = 627

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 284/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNN    +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNTHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 153/463 (33%), Gaps = 50/463 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNTHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|216263495|ref|ZP_03435490.1| DNA gyrase, B subunit [Borrelia afzelii ACA-1]
 gi|215980339|gb|EEC21160.1| DNA gyrase, B subunit [Borrelia afzelii ACA-1]
          Length = 634

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 285/639 (44%), Positives = 418/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVIDNSIDEALAGFCDRIDVII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ I R+G I+  +F  GI  + + V G +   TGT+VTFL  S+IF   D+N
Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGESSI-TGTKVTFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + IS+ DKR  + +    +++GGI++FV YL    K       
Sbjct: 180 FDVLEKRLKELAFLNDKICISIEDKRFGKEKSSKFYFEGGIKSFVDYLTNDSKAYQSESY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGLINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE++ +VE  V + L   +
Sbjct: 300 ISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYEHLLKII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE  +I+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 NLNPLEIDLILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPPLYKIKYDN 538

Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  DE+  E +L +    + +  +       G ++   L         +D   +   
Sbjct: 539 RIYYFYDEKEKEKFLNSIEAKNRNSILLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    +E   I      +  +     +     N +N 
Sbjct: 594 LMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F    + I +  I      +  +  +               L++I +  R  I +Q
Sbjct: 508 LAFFFRYMRELIENGYIYIAMPPLYKIKYDNRIYYFYDEKEKEKFLNSIEAKNRNSILLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNAL 627

Query: 798 PS-ALDI 803
               LD+
Sbjct: 628 NVINLDV 634


>gi|195942016|ref|ZP_03087398.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi 80a]
 gi|216264581|ref|ZP_03436573.1| DNA gyrase, B subunit [Borrelia burgdorferi 156a]
 gi|218249329|ref|YP_002374947.1| DNA gyrase, B subunit [Borrelia burgdorferi ZS7]
 gi|221218016|ref|ZP_03589482.1| DNA gyrase, B subunit [Borrelia burgdorferi 72a]
 gi|223888682|ref|ZP_03623273.1| DNA gyrase, B subunit [Borrelia burgdorferi 64b]
 gi|224533655|ref|ZP_03674244.1| DNA gyrase, B subunit [Borrelia burgdorferi CA-11.2a]
 gi|225548740|ref|ZP_03769787.1| DNA gyrase, B subunit [Borrelia burgdorferi 94a]
 gi|225549469|ref|ZP_03770435.1| DNA gyrase, B subunit [Borrelia burgdorferi 118a]
 gi|226321066|ref|ZP_03796608.1| DNA gyrase, B subunit [Borrelia burgdorferi 29805]
 gi|226321745|ref|ZP_03797271.1| DNA gyrase, B subunit [Borrelia burgdorferi Bol26]
 gi|215981054|gb|EEC21861.1| DNA gyrase, B subunit [Borrelia burgdorferi 156a]
 gi|218164517|gb|ACK74578.1| DNA gyrase, B subunit [Borrelia burgdorferi ZS7]
 gi|221191964|gb|EEE18185.1| DNA gyrase, B subunit [Borrelia burgdorferi 72a]
 gi|223885498|gb|EEF56597.1| DNA gyrase, B subunit [Borrelia burgdorferi 64b]
 gi|224513328|gb|EEF83690.1| DNA gyrase, B subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369746|gb|EEG99193.1| DNA gyrase, B subunit [Borrelia burgdorferi 118a]
 gi|225370770|gb|EEH00206.1| DNA gyrase, B subunit [Borrelia burgdorferi 94a]
 gi|226232934|gb|EEH31687.1| DNA gyrase, B subunit [Borrelia burgdorferi Bol26]
 gi|226233476|gb|EEH32215.1| DNA gyrase, B subunit [Borrelia burgdorferi 29805]
 gi|312148462|gb|ADQ31121.1| DNA gyrase, B subunit [Borrelia burgdorferi JD1]
          Length = 634

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/639 (44%), Positives = 417/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+G I+  +F  GI  + + V G +   TGT+VTFL  S+IF   D+N
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + IS+ DKR  + +    +++GGI++FV YL    K     P 
Sbjct: 180 FDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE+R +VE  V + L   +
Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE   I+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCASKNPLEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538

Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  +E+  E +L +    + +          G ++   L         +D   +   
Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    IE   I      +  +     +     N +N 
Sbjct: 594 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F      I +  I      +  +  +               LD+I +  R  IS+Q
Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627

Query: 798 PS-ALDI 803
               LD+
Sbjct: 628 NVINLDV 634


>gi|262039519|ref|ZP_06012821.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264]
 gi|261746500|gb|EEY34037.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264]
          Length = 660

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 266/609 (43%), Positives = 377/609 (61%), Gaps = 30/609 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A++I++L+GL+AV+KRP MYIG T    GLHH+++E++DN++DE+L G  D I V 
Sbjct: 3   NNYGAENIKVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNSVDEALAGVCDNIIVK 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  D    VSDNGRGIP   H E G S  EV+MT LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 62  ILKDNVIEVSDNGRGIPFATH-ETGKSTLEVVMTVLHAGGKFDNDNYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQD 186
           VNALS WL++ + R+G I   ++  G   + +   G A  +  GT   F    +IF    
Sbjct: 121 VNALSEWLEVTVTRDGQIVRQTYKRGEPVSDVEKIGEASPEAHGTTTKFKADPEIFETTV 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI-TMFYKGGIEAFVSYLDRHKKP--- 242
           + +  L+ RL+EL++LN  + I+LID+R  E  +     ++GGI  F++ +   +K    
Sbjct: 181 YEFSVLESRLKELAYLNKGLTITLIDERDQEKIKEEKFLFEGGIIDFLNEIADEEKITDE 240

Query: 243 --LMQSPIRIQGSR------------------DNISIDLAMRWNDGYHENVLCFTNNIPQ 282
              M     ++ ++                    + +++AM +     ENV  F NNI  
Sbjct: 241 VIYMSDTYEVEAAKEVEIVDDNGNTVKKMRAAKFVEVEIAMSYTISQRENVYSFVNNINT 300

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH+SG R+ALTR I    ++    K    +  G D REG   V+S+K+P+P+F  Q
Sbjct: 301 HEGGTHVSGFRTALTRTINDIAKQMNIVKDKDGTFQGTDVREGLVCVISVKIPEPQFEGQ 360

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEV  +V + V + L  +LE+HP EA+ I++K+  +   R+AA++AR+L  RK
Sbjct: 361 TKTKLGNSEVTGIVSNIVGNNLKFYLEDHPKEAEKIIEKMTMSKRAREAAKKARELVLRK 420

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L++ SLPGKLADCS +DP +SE+F+VEG+SAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 421 NTLEVGSLPGKLADCSSKDPSESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKILNVEK 480

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           +   K+L + EI  +ITA G G G D  D+ KLRYHKIIIMTDADVDGAHIRTL+LTFF+
Sbjct: 481 SGMHKLLENAEIRAMITAFGAGFG-DDMDLEKLRYHKIIIMTDADVDGAHIRTLMLTFFY 539

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKG 580
           RQ+  LI+ G++YI +PPLY +  GK+++Y   +E ++                     G
Sbjct: 540 RQLRELINEGYIYIAQPPLYKVQAGKAIKYAYSDEQMKKITSVLERDNRRYTIQRYKGLG 599

Query: 581 VISKNDLRN 589
            ++   L  
Sbjct: 600 EMNPEQLWE 608



 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 52/121 (42%), Positives = 70/121 (57%), Gaps = 8/121 (6%)

Query: 691 RIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTI---FSIGRKGISMQRYKGLG 743
           R     I E Y+      L  +  G  IK       +  I        +  ++QRYKGLG
Sbjct: 540 RQLRELINEGYIYIAQPPLYKVQAGKAIKYAYSDEQMKKITSVLERDNRRYTIQRYKGLG 599

Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           EMN  QLWETTL+P+ R+LL+V + DAS AD +F+ LMGD+VEPRR+FI+EN+     LD
Sbjct: 600 EMNPEQLWETTLDPEVRTLLKVTMEDASYADKMFNILMGDKVEPRRQFIEENANYVRNLD 659

Query: 803 I 803
           +
Sbjct: 660 V 660


>gi|229542310|ref|ZP_04431370.1| DNA gyrase, B subunit [Bacillus coagulans 36D1]
 gi|229326730|gb|EEN92405.1| DNA gyrase, B subunit [Bacillus coagulans 36D1]
          Length = 641

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 294/589 (49%), Positives = 410/589 (69%), Gaps = 5/589 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + +Q  SY A+ IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L G+ D
Sbjct: 4   EQLQKQSYGAEQIQVLEGLEAVRKRPGMYIGSTSA-RGLHHLVWEIVDNSIDEALAGFCD 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +  D S TV DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 63  EINVFIEKDNSITVKDNGRGIPVGIQEKVGRPAVEVIMTILHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L + + R+G+IY   +  G     L + G   + TGT   F P  +IF
Sbjct: 123 VGASVVNALSTELDVYVHRDGHIYYQKYRRGKPAFDLKIIGET-DRTGTTTHFKPDPEIF 181

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +    F++D L  RLREL+FLN  ++I++ DKR   PR+    Y+GGI+++V +L+R K+
Sbjct: 182 TETTEFDFDILTTRLRELAFLNKGIKITIEDKREKNPRKQEYHYEGGIKSYVEHLNRSKE 241

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L + PI ++G +D I++++++++NDG+  N+  F NNI   +GGTH SG ++ALTR I 
Sbjct: 242 VLHKEPIYVEGEKDGITVEVSLQYNDGFASNIYSFANNIHTYEGGTHESGFKTALTRVIN 301

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K+++ ++ G+D REG T+++SIK PDP+F  QTK KL ++E R++ ++  +
Sbjct: 302 DYARKNNLIKENEANLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNTEARTITDAVFS 361

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +    ++ E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+  SLPGKLADC+ RD
Sbjct: 362 ETFEKFMMENPQVARKIVEKGLMAARARMAAKKARELTRRKSALESTSLPGKLADCTSRD 421

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P +SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ EI T+ITAL
Sbjct: 422 PAESELYIVEGDSAGGSAKQGRDRMFQAILPLRGKILNVEKARLDKILSNAEIRTIITAL 481

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG+G+D FDI+K RYHK++IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +PPL
Sbjct: 482 GTGVGED-FDISKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIDAGYIYIAQPPL 540

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y + +GK ++YV  +  LE+ L       +         G ++   L  
Sbjct: 541 YKVQQGKRVEYVYSDRGLEELLNTLPAQPKPAIQRYKGLGEMNPEQLWE 589



 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 8/188 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +  +     + +  S      +V      V    +    
Sbjct: 457 ILNVEKARLDKILSNAEIRTIITALGTGVGEDFDISKARYHKVVIMTDADVDGAHIRTLL 516

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSLLDTIFSIGRKGISM 736
             F +      I +  I       L  +  G +++      G   LL+T+ +  +   ++
Sbjct: 517 LTFFYRYMRPLIDAGYIY-IAQPPLYKVQQGKRVEYVYSDRGLEELLNTLPAQPK--PAI 573

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT+ P  R++L+V + DA +AD  F  LMGD+VEPRR FI+EN+
Sbjct: 574 QRYKGLGEMNPEQLWETTMEPANRTMLQVSLDDAIEADGTFEMLMGDKVEPRRNFIEENA 633

Query: 797 LPS-ALDI 803
           +    LDI
Sbjct: 634 IYVKNLDI 641


>gi|300778803|ref|ZP_07088661.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
           gleum ATCC 35910]
 gi|300504313|gb|EFK35453.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
           gleum ATCC 35910]
          Length = 644

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 278/595 (46%), Positives = 393/595 (66%), Gaps = 12/595 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A SIQ L+G++ V+ RPSMYIGD  G  GLHH++YEV+DN+IDE+L GY D I
Sbjct: 1   MSQKQYTASSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEALAGYCDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++       VSDNGRGIP D H++E  SA EV+MT++ AGGKF++ SYKVSGGLHGVG
Sbjct: 60  FVSIKEGNGIEVSDNGRGIPVDFHEKEQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VS VNALS+ +   + R+GN+Y+  +  G     +   G +    GT+  F P   IF+ 
Sbjct: 120 VSCVNALSNEMITTVYRDGNVYQQIYSRGKAQTGVEEIGHSE-RRGTKQFFQPDDTIFTE 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHK 240
             +NYDTL  RLRELS+LN  + I+L D+R        R      +GG++ FV+Y+D ++
Sbjct: 179 LVYNYDTLASRLRELSYLNKGITITLTDEREKLEDGSFRSEVFHSEGGLKEFVAYIDGNR 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +M+  I ++G RD+I +++AMR+N  ++EN+  + NNI   +GGTHL+G R ALTR +
Sbjct: 239 ESIMEHVIFMEGERDDIPVEVAMRYNTSFNENLHSYVNNINTHEGGTHLAGFRRALTRTL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +     +K+K  V GDD REG T+V+S+K+ +P+F  QTK KL +SEV   V+  V
Sbjct: 299 KKYADDLGIPQKEKVEVTGDDFREGLTAVVSVKVMEPQFEGQTKTKLGNSEVSGAVDKIV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +LEE+P EAK IV+KV+ A+  R AA++AR++ +RK  +  + LPGKL+DCS +
Sbjct: 359 GEMLTNFLEENPNEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGSGLPGKLSDCSSK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SE+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++   K+  ++EI  + TA
Sbjct: 419 DPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIRNIYTA 478

Query: 481 LGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LG  +G +        +KLRYHKI+IMTDAD+DG+HI TL+LTFFFR M  LI NG++YI
Sbjct: 479 LGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIENGYIYI 538

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
            +PPLY + +G    Y  +E+  E++ +  S   +          G ++   L  
Sbjct: 539 AQPPLYLLKKGNKKVYAYNEKEREEFTLEMSPDGKGVEVQRYKGLGEMNPEQLWE 593



 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 8/236 (3%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
               +   +S+  + + D         +                +E++++  V++ E  +
Sbjct: 414 DCSSKDPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIR 473

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
            I  +L   +        E+  K+ + S      +V      +    +      F F   
Sbjct: 474 NIYTALGVSVG------TEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYM 527

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG--RKGISMQRYKGLGEMN 746
            + I +  I      +  L     K+         +    +    KG+ +QRYKGLGEMN
Sbjct: 528 KELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLEMSPDGKGVEVQRYKGLGEMN 587

Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
             QLWETTLNP+ R L +V I +A +AD +FS LMGDEV PRREFI++N+  + +D
Sbjct: 588 PEQLWETTLNPEHRILKQVTIDNAVEADSIFSMLMGDEVPPRREFIEKNAKYAKID 643


>gi|224534805|ref|ZP_03675377.1| DNA gyrase, B subunit [Borrelia spielmanii A14S]
 gi|224514053|gb|EEF84375.1| DNA gyrase, B subunit [Borrelia spielmanii A14S]
          Length = 639

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/639 (44%), Positives = 418/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 7   NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 65

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 66  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ I R+G I+  +F  GI  + + V G +   TGT+VTFL  S+IF   D+N
Sbjct: 126 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGES-VITGTKVTFLADSEIFETLDYN 184

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + IS+ D+R  + +    +++GGI++FV YL  + K       
Sbjct: 185 FDVLEKRLKELAFLNDKIYISIEDRRFGKEKSSKFYFEGGIKSFVDYLTNNSKAYQSESY 244

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 245 YIDGFMNDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 304

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE++ +VE  V + L   +
Sbjct: 305 ISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEVIVYEHLLKII 364

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 365 NLNPLEIDIILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 424

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 425 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 484

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 485 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPPLYKIKYDN 543

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  DE+  E +L +        +F       G ++   L         +D   +   
Sbjct: 544 RIYYFYDEKEKEKFLDSIETKNRNSIFLQRYKGLGEMNPTQLWET-----TMDPARRKMR 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    +E   I      +  +     +     N +N 
Sbjct: 599 LMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 637



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F    + I +  I      +  +  +               LD+I +  R  I +Q
Sbjct: 513 LAFFFRYMRELIENGYIYIAMPPLYKIKYDNRIYYFYDEKEKEKFLDSIETKNRNSIFLQ 572

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 573 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNAL 632

Query: 798 PS-ALDI 803
               LD+
Sbjct: 633 NVINLDV 639


>gi|145577981|gb|ABP82709.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar seoulensis]
          Length = 632

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 283/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGG AKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGCAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 6/199 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++   +  I       +         ++  
Sbjct: 437 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIM 494

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I       L  +  G KI+       L+ I
Sbjct: 495 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKI 553

Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+
Sbjct: 554 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613

Query: 785 VEPRREFIQENSLPS-ALD 802
           VEPRR FIQEN+     LD
Sbjct: 614 VEPRRNFIQENAKYVKNLD 632


>gi|145578023|gb|ABP82730.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar fukuokaensis]
          Length = 632

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/585 (48%), Positives = 404/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV++RP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRERPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L     L +         G +S   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPALPKPGIQRYKGLGEMSPTQLWE 581



 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 91/468 (19%), Positives = 154/468 (32%), Gaps = 51/468 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +         +QRYKGLGEM+ +QLWETT+
Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPALPKPGIQRYKGLGEMSPTQLWETTM 584

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|190710569|gb|ACE95115.1| gyrase subunit B [Bacillus thuringiensis serovar alesti]
          Length = 627

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTALHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 153/463 (33%), Gaps = 50/463 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|257871393|ref|ZP_05651046.1| DNA gyrase B subunit [Enterococcus gallinarum EG2]
 gi|257805557|gb|EEV34379.1| DNA gyrase B subunit [Enterococcus gallinarum EG2]
          Length = 649

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 294/650 (45%), Positives = 417/650 (64%), Gaps = 9/650 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  ++       YDA  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEEEKSLVERAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATAIQVIIEEDNSITVVDDGRGIPVDIQAKTGRPAVETVFTILHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +++ +EG +Y   +  G +   L V G   +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVKVFKEGKVYYQEYHRGAVVEDLKVIGET-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF+    FN+D L  R+REL+FLN  ++IS+ DKR   P      Y GGI+++V 
Sbjct: 179 VPDPEIFTETTVFNFDKLATRVRELAFLNRGLKISIEDKREEHPVLKEYHYDGGIKSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+  K  +   PI ++G +  I++++++++ D YH N+L F NNI   +GGTH SG ++
Sbjct: 239 HLNASKTVIFPEPIYLEGEQQGITVEVSLQYTDSYHNNLLSFANNIHTYEGGTHESGFKT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  KS   K++  ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR+
Sbjct: 299 ALTRVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRT 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           V +   ++  + +L E+P   + +V+K L AS  R AA+RAR++TRRKG L+I++LPGKL
Sbjct: 359 VTDRLFSEHFTKFLMENPAVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLYG+ +GK++ Y++  ++ E  L N   S         +      ++ +     
Sbjct: 538 YIAQPPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPATPKPSVQRYKGLGEMDDHQLWE 597

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +D   +          IE   I  +   +  +     +        N 
Sbjct: 598 TTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QRYKGLGEM+  QLWETT++P+ R +LRV + DA +AD +F  LMGD VEPRR FI+E
Sbjct: 580 SVQRYKGLGEMDDHQLWETTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 640 NAHYVKNLDI 649


>gi|145578007|gb|ABP82722.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar finitimus]
          Length = 632

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 288/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ +V+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKMVEKGTMAARARVAAKKARELTRRKRALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 134/367 (36%), Gaps = 33/367 (8%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525
             ++            G       +      K  I+ DAD +  G  +R  L      + 
Sbjct: 267 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 326

Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571
           P+    G           +     +      +++ +  ++   ++         +  +++
Sbjct: 327 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKMVEKGTMAARARVAAKK 386

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                  K  +  + L   + D    D  I + Y     +    A      + ++   + 
Sbjct: 387 ARELTRRKRALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 446

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR-------GVQEQFVLE 678
             + +    RL+ I    E     +        + DI   R  +        V    +  
Sbjct: 447 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRT 506

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736
               F +    + I    I       L  I  G KI+       L+ I +    +    +
Sbjct: 507 LLLTFFYRYMRQIIEHGYIY-IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGI 565

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+
Sbjct: 566 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 625

Query: 797 LPS-ALD 802
                LD
Sbjct: 626 KYVKNLD 632


>gi|15594781|ref|NP_212570.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi B31]
 gi|3915725|sp|P33769|GYRB_BORBU RecName: Full=DNA gyrase subunit B
 gi|2688337|gb|AAC66802.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi B31]
          Length = 639

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/639 (44%), Positives = 417/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 7   NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 65

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 66  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+G I+  +F  GI  + + V G +   TGT+VTFL  S+IF   D+N
Sbjct: 126 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 184

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + IS+ DKR  + +    +++GGI++FV YL    K     P 
Sbjct: 185 FDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPY 244

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 245 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 304

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE+R +VE  V + L   +
Sbjct: 305 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 364

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE   I+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 365 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 424

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 425 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 484

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 485 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 543

Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  +E+  E +L +    + +          G ++   L         +D   +   
Sbjct: 544 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    IE   I      +  +     +     N +N 
Sbjct: 599 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 637



 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F      I +  I      +  +  +               LD+I +  R  IS+Q
Sbjct: 513 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 572

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 573 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 632

Query: 798 PS-ALDI 803
               LD+
Sbjct: 633 NVINLDV 639


>gi|300711735|ref|YP_003737549.1| DNA topoisomerase II subunit B (DNA gyrase) [Halalkalicoccus
           jeotgali B3]
 gi|299125418|gb|ADJ15757.1| DNA topoisomerase II subunit B (DNA gyrase) [Halalkalicoccus
           jeotgali B3]
          Length = 635

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 288/591 (48%), Positives = 394/591 (66%), Gaps = 10/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+    S Y A  IQ+L+GL+AV+ RP+MYIG TD   GLHH++YEV+DNAIDE+L GY
Sbjct: 1   MSEQ---SEYGAGQIQVLEGLEAVRTRPAMYIGSTDS-RGLHHLVYEVVDNAIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ DGS +V+D+GRGIP D H E    A EVIMT LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDTIGVTIHEDGSVSVADDGRGIPVDTHAEYDRPAVEVIMTVLHAGGKFDSKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPS 178
           HGVGVSVVNALS  L++ I+R+G ++   F +G  +  +       A  +TGT V F P 
Sbjct: 117 HGVGVSVVNALSERLEVEIRRDGAVWHHRFDHGAPEGDIERVRDLEAEEETGTTVRFWPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF  ++F   TL++R+REL+FLN  V+I+L D+R       T  Y GGI  FV YL+ 
Sbjct: 177 DGIFEDREFVVSTLENRIRELAFLNPGVEITLADERDETES--TFQYDGGIREFVEYLNE 234

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + PL +  + +     NI +++AM+  D    ++  F NNI  ++GGTHL+G ++ALTR
Sbjct: 235 TRTPLHEDVLYLDDEERNIQVEVAMQATDELQGSIHAFANNINTREGGTHLTGFKTALTR 294

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y        +   ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR +VES
Sbjct: 295 VVNDYANGEGLLDEIDENLRGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVES 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V++GL  + EEHP  A+ +V+K ++A+  R AA++A +LTRRK  L+  +LPGKLADC 
Sbjct: 355 AVHEGLGTYFEEHPDTAQAVVRKAVEAAKARKAAKQAEELTRRKSALESTALPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP ++ELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ R D++L + EI  LI
Sbjct: 415 TRDPNEAELFVVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKHRLDRILENNEIRDLI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+G G+G++ FDI++ RY +I+IMTDADVDGAHIRTLLLT F+R M  LI  G++Y  +
Sbjct: 475 TAVGAGVGEE-FDIDEARYKRIVIMTDADVDGAHIRTLLLTLFYRHMRPLIEAGYVYAAQ 533

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY +  G   +    E   E  +     + +        G ++ + L  
Sbjct: 534 PPLYRLRYGGETREAMAEAEREAIIDEYG-APDRIQRFKGLGEMNPDQLWE 583



 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMN  QLWETT+NPD R L RV + DA+ AD +FS LMGD VEPR++FIQE+
Sbjct: 567 IQRFKGLGEMNPDQLWETTMNPDNRVLKRVTVEDAAAADRMFSVLMGDAVEPRKQFIQEH 626

Query: 796 SLPSA-LDI 803
           +  +  +DI
Sbjct: 627 AKEAEWVDI 635


>gi|111115263|ref|YP_709881.1| DNA gyrase, subunit B [Borrelia afzelii PKo]
 gi|110890537|gb|ABH01705.1| DNA gyrase, subunit B [Borrelia afzelii PKo]
          Length = 634

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 285/639 (44%), Positives = 418/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVIDNSIDEALAGFCDRIDVII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ I R+G I+  +F  GI  + + V G +   TGT+VTFL  S+IF   D+N
Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGESSI-TGTKVTFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + IS+ DKR  + +    +++GGI++FV YL    K       
Sbjct: 180 FDVLEKRLKELAFLNDKICISIEDKRFGKEKSSKFYFEGGIKSFVDYLTNDSKAYQSESY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGLMNDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE++ +VE  V + L   +
Sbjct: 300 ISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYEHLLKII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE  +I+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 NLNPLEIDLILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPPLYKIKYDN 538

Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  DE+  E +L +    + +  +       G ++   L         +D   +   
Sbjct: 539 RIYYFYDEKEKEKFLNSIETKNRNSILLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    +E   I      +  +     +     N +N 
Sbjct: 594 LMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F    + I +  I      +  +  +               L++I +  R  I +Q
Sbjct: 508 LAFFFRYMRELIENGYIYIAMPPLYKIKYDNRIYYFYDEKEKEKFLNSIETKNRNSILLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNAL 627

Query: 798 PS-ALDI 803
               LD+
Sbjct: 628 NVINLDV 634


>gi|326802621|ref|YP_004320439.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650211|gb|AEA00394.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 660

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 281/587 (47%), Positives = 395/587 (67%), Gaps = 5/587 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            Q   Y+A  IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE+L GYAD I
Sbjct: 26  NQAGEYNASQIQVLEGLEAVRKRPGMYIGST-GAPGLHHLVWEIVDNSIDEALAGYADKI 84

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +  DGS TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKVSGGLHGVG
Sbjct: 85  DIKIESDGSITVIDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVG 144

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
            SVVNALS+ L++ + R+G IY+  +  G + + L V G + + TGT V F+   +IF  
Sbjct: 145 ASVVNALSTKLRVEVYRDGKIYQQEYSRGHIVSDLKVVGES-DKTGTVVNFVADPEIFTD 203

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             D+++ TL  R+REL+FLN  + I+L D+R  + +E+   Y+GGI+ +V YL+ +K+ L
Sbjct: 204 TTDYDFQTLNKRVRELAFLNKGLHITLEDRREEDSQEVAYQYEGGIKEYVQYLNENKEIL 263

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + P+ ++G  D+I +++A ++  GYH N + F NNI   +GGTH SG+++ALTR I  Y
Sbjct: 264 FEEPVYLEGQMDDIEVEVAFQYTAGYHSNFMSFANNIHTFEGGTHESGIKTALTRTINDY 323

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
                  K+   ++ G+D REG T ++SI+ P+P+F  QTK KL +SEVR++ +      
Sbjct: 324 ARSQNLLKEKDDNLSGEDVREGLTLIVSIRHPNPQFEGQTKMKLGNSEVRTITDRLFGQH 383

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L E P  A+ IV K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS R P+
Sbjct: 384 LEQFLYETPNIARQIVDKGILASKARQAAKRAREMTRKKSGLEISNLPGKLADCSSRVPE 443

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + ELF+VEG+SAGGSAK GR R  QAILP+RGKILNVE+A  D++L+++EI +L TA+GT
Sbjct: 444 ECELFIVEGNSAGGSAKLGRDRHFQAILPIRGKILNVEKASMDRILANEEIRSLFTAMGT 503

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G G D FD+ K RYHK++IMTDADVDGAHIRTLLLT  +R M  L+  G++YI  PPLY 
Sbjct: 504 GWGND-FDVTKARYHKLVIMTDADVDGAHIRTLLLTLIYRYMRPLLDAGYIYIAVPPLYQ 562

Query: 544 ITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRN 589
           + +GK++ YV  ++ L DY+                 G +    L  
Sbjct: 563 VRQGKNVHYVNSDQELNDYMKTLAERPRPAVQRYKGLGEMDAEQLWE 609



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 3/125 (2%)

Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQ 737
            + +   +Y R    +  I      +  +    +   +     L D + ++  +   ++Q
Sbjct: 535 LLLTLIYRYMRPLLDAGYIYIAVPPLYQVRQGKNVHYVNSDQELNDYMKTLAERPRPAVQ 594

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEM+A QLWETT++P  R +L+V + DA +AD   S LMGD V PRR+FI+ N+ 
Sbjct: 595 RYKGLGEMDAEQLWETTMDPTQRQMLQVTVDDAQEADRNISMLMGDLVAPRRDFIENNAT 654

Query: 798 PSALD 802
            + +D
Sbjct: 655 YATID 659


>gi|145578005|gb|ABP82721.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar bolivia]
          Length = 632

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 288/585 (49%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIYE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 135/367 (36%), Gaps = 33/367 (8%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525
             ++            G       +      K  I+ DAD +  G  +R  L      + 
Sbjct: 267 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 326

Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571
           P+    G           +     +      +++ +  ++   +I+        +  +++
Sbjct: 327 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 386

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                  K  +  + L   + D    D  I + Y     +    A      + ++   + 
Sbjct: 387 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 446

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR-------GVQEQFVLE 678
             + +    RL+ I    E     +        + DI   R  +        V    +  
Sbjct: 447 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRT 506

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736
               F +    + I    I       L  I  G KI+       L+ I +    +    +
Sbjct: 507 LLLTFFYRYMRQIIEHGYIY-IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGI 565

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+
Sbjct: 566 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 625

Query: 797 LPS-ALD 802
                LD
Sbjct: 626 KYVKNLD 632


>gi|319651104|ref|ZP_08005238.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
 gi|317397274|gb|EFV77978.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
          Length = 642

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 293/589 (49%), Positives = 409/589 (69%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +Q  SYD + IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY  
Sbjct: 6   KAVQEQSYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGYCS 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 65  EINVIIEKDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G  Y   F  G+    L V G   + TGT + F P S+IF
Sbjct: 125 VGASVVNALSTVLEVFVHRDGQKYYQKFERGVPSADLEVIGETDH-TGTTIHFKPDSEIF 183

Query: 183 SVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +   +++Y+TL +R+REL+FLN  ++I++ DKR    +     Y+GGI+++V +L+R K+
Sbjct: 184 TETLEYDYETLANRIRELAFLNRGLKITIEDKREENKKSE-YMYEGGIKSYVEHLNRTKE 242

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L + PI I G R+ I++++++++NDG+  N+  F NNI   +GGTH SG ++ALTR I 
Sbjct: 243 VLHEEPIYIDGEREGITVEVSIQYNDGFTSNIYSFANNIHTYEGGTHESGFKTALTRVIN 302

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K+   ++ G+D REG T+++S+K PDP+F  QTK KL +SEVR+  ++  +
Sbjct: 303 DYARKNGVFKESDANLSGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVRAATDTIFS 362

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  ++ E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS +D
Sbjct: 363 EALEKFMLENPTVARKIVEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCSSKD 422

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +ITA+
Sbjct: 423 PSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITAI 482

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D FDI++ RYHKI+IMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 483 GTGIGED-FDISRARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQPPL 541

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           Y I +GK ++Y  ++  L+  L       +         G ++   L  
Sbjct: 542 YKIQQGKKIEYAYNDRELDKILGELPSQPKPGIQRYKGLGEMNPGQLWE 590



 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 6/200 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +  I     + +  S      +V  
Sbjct: 446 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRAIITAIGTGIGEDFDISRARYHKIVIM 503

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I +  I       L  I  G KI+       LD I
Sbjct: 504 TDADVDGAHIRTLLLTFFYRYMRQIIEAGYIY-IAQPPLYKIQQGKKIEYAYNDRELDKI 562

Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
                 +    +QRYKGLGEMN  QLWETT+NP++R+LL+V + DA +AD+ F  LMGD+
Sbjct: 563 LGELPSQPKPGIQRYKGLGEMNPGQLWETTMNPESRTLLQVNLEDAIEADETFEILMGDK 622

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR FI+EN++    LDI
Sbjct: 623 VEPRRNFIEENAVYVKNLDI 642


>gi|145577989|gb|ABP82713.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           weihenstephanensis]
 gi|145578003|gb|ABP82720.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar vazensis]
 gi|145578011|gb|ABP82724.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           weihenstephanensis]
          Length = 632

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 282/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+D+GRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  G+    L V G   + TGT   F P S+IF+   
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  + + LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 6/199 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++   +  I       +         ++  
Sbjct: 437 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIM 494

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I       L  +  G KI+       L+ I
Sbjct: 495 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKI 553

Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+
Sbjct: 554 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613

Query: 785 VEPRREFIQENSLPS-ALD 802
           VEPRR FIQEN+     LD
Sbjct: 614 VEPRRNFIQENAKYVKNLD 632


>gi|328949382|ref|YP_004366719.1| DNA gyrase, B subunit [Treponema succinifaciens DSM 2489]
 gi|328449706|gb|AEB15422.1| DNA gyrase, B subunit [Treponema succinifaciens DSM 2489]
          Length = 641

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 277/595 (46%), Positives = 392/595 (65%), Gaps = 11/595 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +N+ Y A SIQ+LKGL+AV+KRP MYIG T G +GLHH++YEV+DN+IDE++ GY
Sbjct: 1   MSE--ENNQYGAGSIQVLKGLEAVRKRPGMYIGST-GPNGLHHLVYEVVDNSIDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              ITV L  D  C V DNGRGIP D+H  E ISA E+++TRLHAGGKF++ +YKVSGGL
Sbjct: 58  CTQITVALEKDDICRVEDNGRGIPVDIHPTEHISALELVLTRLHAGGKFDKSNYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS W++  + ++G  Y   +  GI  + +   G      GT + +   + 
Sbjct: 118 HGVGVSCVNALSVWMEAFVNKDGKRYHQKYAEGIPKSKVECIGDTE-LHGTTIRWKADAS 176

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     +N+D L  RLREL+FLN  + I   D+R   P+E+   ++GGI+ +VSYL+  
Sbjct: 177 IFTETTTYNFDVLSTRLRELAFLNPGITIIFRDERLENPKEVVFKFEGGIKHYVSYLNEG 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KK + + PI I G  +++ I+LAM++ND Y EN+  + N+I  ++GGTHL G + ALT  
Sbjct: 237 KKIIPEEPIYINGEENDVIIELAMQYNDSYSENIFSYVNDINTREGGTHLDGFKIALTVV 296

Query: 300 ITSYVEKSFGS---KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           +  ++EK+            + GDD R G T++LS+K+P+P+F  QTK KL +SEVR  V
Sbjct: 297 LNKFLEKNEKLLKKLDKDEKLTGDDVRVGLTAILSLKIPEPQFEGQTKTKLGNSEVRGYV 356

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +S V + L+ + E++P    +I++K +  +  R AAR+A+D  RRK  +D   LPGKL+D
Sbjct: 357 DSLVKEKLTLFCEQNPQITTMILEKAVGEAAARIAARKAKDSARRKNNIDSFGLPGKLSD 416

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS ++  + E+++VEGDSAGGSAK+GR  + QAILPL GK+LNVE+ R DK+++++++  
Sbjct: 417 CSSKNAAECEVYIVEGDSAGGSAKKGRDAKTQAILPLWGKMLNVEKVRADKVVNNEKLQP 476

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I +LG G G+D F+I KLRYHKIIIM DADVDG+HIRTLLLTFFFR MP LI  G++Y+
Sbjct: 477 VIASLGAGFGKD-FNIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMPDLIEKGYVYL 535

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRN 589
             PPL+ I  GK   YV  +E  +  L        +         G +  N L +
Sbjct: 536 AMPPLFKIEIGKQKIYVYSDEERDAELEKLGDKREKADVQRYKGLGEMDGNQLWD 590



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 2/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    KL   +  +     K ++        ++      V    +    
Sbjct: 457 MLNVEKVRADKVVNNEKLQPVIASLGAGFGKDFNIEKLRYHKIIIMADADVDGSHIRTLL 516

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F F      I    +      +  +     KI +         +  +G K     +QR
Sbjct: 517 LTFFFRYMPDLIEKGYVYLAMPPLFKIEIGKQKIYVYSDEERDAELEKLGDKREKADVQR 576

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+ +QLW+TT+NP+TR +  V I DA  AD +FS  MG+EVEPRR+FI+EN++ 
Sbjct: 577 YKGLGEMDGNQLWDTTMNPETRRMKVVTIPDAVAADRIFSICMGEEVEPRRKFIEENAVY 636

Query: 799 SALDI 803
           + LD+
Sbjct: 637 ANLDV 641


>gi|145578013|gb|ABP82725.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar graciosensis]
          Length = 632

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++ ++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWGIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 158/466 (33%), Gaps = 47/466 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|1209515|gb|AAC43643.1| gyrase B [Mycoplasma pneumoniae]
          Length = 637

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 265/601 (44%), Positives = 380/601 (63%), Gaps = 15/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M DN +  +YD+ SI+IL+GL+AV+KRP MYIG T GE GLHHMI+E++DN+IDE++ G+
Sbjct: 1   MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGST-GEEGLHHMIWEIIDNSIDEAMGGF 59

Query: 61  ADIITVTLNMDGSCT-VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           A  + +TL  D   T V D+GRGIP D+H +   S  E + T LHAGGKF+  SYKVSGG
Sbjct: 60  ASTVKLTL-KDNFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSS  K+ + RE   Y ++F N G +   LV  G    + GT+V F+P 
Sbjct: 119 LHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             +    D+    +  RL++L+FLN  +QI  +D+R   P+  +  Y GG+  ++ +L+ 
Sbjct: 179 FTVMEKSDYKQTVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNN 238

Query: 239 HKKPLMQSPIRIQ----------GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            K+PL +  I  +               I +++A ++N  Y++++  F NNI   +GGTH
Sbjct: 239 EKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTH 298

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + G R+AL + I  +  ++   K+    +  DD  EG T+++SIK P+P++  QTK+KL 
Sbjct: 299 VEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQTKKKLG 358

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V S V++    ++ E+P EA  I++K L A   R  ++ AR+LTRRK   D  
Sbjct: 359 NTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSG 418

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC+ RDP  SEL++VEGDSAGG+AK GR R  QAILPLRGKILNVE++ F+++
Sbjct: 419 SLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSHFEQI 478

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++ EI  L+ A+G GI +  F++ KLRY+KIIIMTDADVDGAHIRTLLLTFFFR M  L
Sbjct: 479 FNNVEISALVMAVGCGI-KPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFRFMYPL 537

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           +  G +YI +PPLY ++      Y++ +  LE++       +         G +    L 
Sbjct: 538 VEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLW 597

Query: 589 N 589
            
Sbjct: 598 E 598



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/58 (67%), Positives = 47/58 (81%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
            ++QRYKGLGEM+A QLWETT++P  R+LL+V + DAS AD  FS LMGDEV PRREF
Sbjct: 580 YNLQRYKGLGEMDAIQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREF 637


>gi|145577973|gb|ABP82705.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           weihenstephanensis]
          Length = 632

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 281/585 (48%), Positives = 401/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+D+GRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  G+    L V G   + TGT   F P S+IF+   
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DT   R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTSATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  + + LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 6/199 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++   +  I       +         ++  
Sbjct: 437 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIM 494

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I       L  +  G KI+       L+ I
Sbjct: 495 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKI 553

Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+
Sbjct: 554 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613

Query: 785 VEPRREFIQENSLPS-ALD 802
           VEPRR FIQEN+     LD
Sbjct: 614 VEPRRNFIQENAKYVKNLD 632


>gi|260891935|ref|YP_003238032.1| DNA gyrase, B subunit [Ammonifex degensii KC4]
 gi|260864076|gb|ACX51182.1| DNA gyrase, B subunit [Ammonifex degensii KC4]
          Length = 636

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 300/587 (51%), Positives = 397/587 (67%), Gaps = 6/587 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +   Y A SIQIL+GL+AV++RP MYIG T G  GLHH++YEV+DN+IDE+L G+  
Sbjct: 4   EEKEREEYRASSIQILEGLEAVRRRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGFCT 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +  D S  V DNGRGIP D+H + G  A EV++T LHAGGKF    YKVSGGLHG
Sbjct: 63  EIEVVIKQDNSVLVKDNGRGIPVDIHPQAGRPAVEVVLTTLHAGGKFGGGGYKVSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS WL++ + REG I+   F  G     L   G   + TGT V F P   IF
Sbjct: 123 VGVSVVNALSEWLEVEVHREGRIWRQRFERGRPVTDLEAIGET-DRTGTTVHFKPDHQIF 181

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+ D L  RLRELSFL   V+I L D+R+ E       +KGG+  FV +L+R ++ 
Sbjct: 182 EEVVFSQDYLTQRLRELSFLVPEVRIVLRDERTGEEF--VFHHKGGLRDFVRHLNRAREV 239

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L   PI + G R+ + ++ A++++DGY E++  + N I   DGGTH +G ++ALTR +  
Sbjct: 240 LHPDPIYLAGEREGMVVEAALQYHDGYAESIFSYANTIRTVDGGTHEAGFKAALTRVVND 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +      +   + G+D REG T+V+++K+PDP+F  QTK KL +++VR VVES V +
Sbjct: 300 YGRRHGIIP-ENFQLAGEDVREGLTAVVAVKVPDPQFEGQTKTKLGNTQVRRVVESIVGE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           GL+++ EE+P  A++IV+K L A+  R+AARRAR+L RRKG+L+  SLPGKLADCSERDP
Sbjct: 359 GLASFFEENPSIARLIVEKALAAARAREAARRARELARRKGLLESTSLPGKLADCSERDP 418

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+EL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L+++EI  LITA+G
Sbjct: 419 AKTELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILANEEIKALITAIG 478

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG+D  D+ K+RYHK+IIMTDADVDGAHIRTLLLTFFFR M  LI  G++YI +PPLY
Sbjct: 479 AGIGEDL-DLKKVRYHKLIIMTDADVDGAHIRTLLLTFFFRYMRPLIEAGYVYIAQPPLY 537

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            + +GK   Y  ++  LE  L     +          G ++   L  
Sbjct: 538 RVRKGKESFYAYNDAELEKLLSTLGRNGVTIQRYKGLGEMNAEQLWE 584



 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 12/201 (5%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  +   E  + +  ++ + +   L+    +  K           L
Sbjct: 447 LPLRGKILNVEKARLDKILANEEIKALITAIGAGIGEDLDLKKVRYHK-----------L 495

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      V    +      F F      I +  +      +  +    +         L 
Sbjct: 496 IIMTDADVDGAHIRTLLLTFFFRYMRPLIEAGYVYIAQPPLYRVRKGKESFYAYNDAELE 555

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
             + ++GR G+++QRYKGLGEMNA QLWETT+NP+ R +L+V + DA  AD+LFS LMGD
Sbjct: 556 KLLSTLGRNGVTIQRYKGLGEMNAEQLWETTMNPEKRVILQVTLEDAVAADELFSTLMGD 615

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +VEPRREFI   +     LDI
Sbjct: 616 KVEPRREFISRYARYVRNLDI 636


>gi|187777362|ref|ZP_02993835.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC
           15579]
 gi|187774290|gb|EDU38092.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC
           15579]
          Length = 637

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 296/591 (50%), Positives = 401/591 (67%), Gaps = 8/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS       YD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+
Sbjct: 1   MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV D+GRG+P  +H +    A EVIMT LHAGGKF    YKVSGGL
Sbjct: 59  CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS    + ++R+G+I+   +  GI    L + G    D GT++ F P  +
Sbjct: 119 HGVGASVVNALSEHCNVEVRRDGHIWLQKYERGIPKTGLDIVGDTE-DHGTKIYFKPDVE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F YDTL  RLREL+FLN  ++ISL D+R  +  +    Y+GG+ +FV YL+R+K
Sbjct: 178 IFDELEFEYDTLAQRLRELAFLNKGIKISLTDERYDK--QEMFHYEGGLRSFVLYLNRNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L Q PI +  ++D   +++AM++NDGY EN+  F NNI   +GGTHL+G +SALTR I
Sbjct: 236 EKLHQQPIYVDKNKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K   +++ GDD REG T+V+S+K+ DP+F  QTK KL +SEVR +V++ V
Sbjct: 296 NDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + + ++LEE+P   KII++K L AS  R+AA+RAR+LTRRK VL+  SLPGKLADCS +
Sbjct: 356 GESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI  +ITA
Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG++ F++ K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PP
Sbjct: 476 FGAGIGKE-FNLEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVEEGHVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           LY I + K   YV  ++ L++ L+     +           G +    L  
Sbjct: 535 LYRIYKAKKELYVYSDKELDEALLELGGKDTNTNIQRYKGLGEMDPEQLWE 585



 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +        K ++      + ++      V    +    
Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFNLEKIRYNRIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F +    + +    +      +  +     ++ +     L + +  +G K    ++QR
Sbjct: 512 LTFFYRYMKELVEEGHVYIAQPPLYRIYKAKKELYVYSDKELDEALLELGGKDTNTNIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEM+  QLWETT+NP+ R+LL+V I DA  AD++F+ LMG +VEPRR+FI+ N+  
Sbjct: 572 YKGLGEMDPEQLWETTMNPEHRTLLQVTIEDAMAADEIFTILMGTKVEPRRDFIENNADK 631

Query: 798 PSALDI 803
              LDI
Sbjct: 632 VVNLDI 637


>gi|145578015|gb|ABP82726.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar ostriniae]
          Length = 632

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 283/585 (48%), Positives = 404/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GL+H+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLYHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       ++        G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKLGIQRYKGLGEMNPTQLWE 581



 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 161/466 (34%), Gaps = 47/466 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +++        +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +  + +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKLGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|117927216|ref|YP_871767.1| DNA gyrase subunit B [Acidothermus cellulolyticus 11B]
 gi|117647679|gb|ABK51781.1| DNA gyrase subunit B [Acidothermus cellulolyticus 11B]
          Length = 666

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 281/600 (46%), Positives = 381/600 (63%), Gaps = 24/600 (4%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+D   +   SSYDA SI +L+GL+AV+KRP MYIG T GE GLHH++YEV+DNA+DE+L
Sbjct: 1   MTDQALSLDASSYDASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G  D I VTL  DG   V DNGRGIP D H  E   A EV++T LHAG KF  + YKVS
Sbjct: 60  AGACDRIDVTLLADGGVRVVDNGRGIPVDEHPGEKRPAVEVVLTVLHAGAKFGGRGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L + + R+G ++  S+  G    PL   G   + TGT VTF P
Sbjct: 120 GGLHGVGVSVVNALSERLDVEVHRDGYVWRQSYRRGTPTGPLQR-GEPTDRTGTTVTFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---------------REIT 222
             +IF    F+++TL +RLRE++FLN  + I+L D+R  E                 E+ 
Sbjct: 179 DPEIFETTRFSFETLANRLREIAFLNKGLTITLRDERPAEHLDSDDAEKPAGGDDPTEVY 238

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNI 280
             Y GG+  +V++L+  K+P  +S I  +      ++S++ A++WN GY E+V  F N I
Sbjct: 239 YRYDGGLVDYVAHLNATKEPAHRSIISFEAHDPVSDMSLEAALQWNTGYTESVHTFANTI 298

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  + E+    KK +  + G+D REG T++LSIK+ +P+F 
Sbjct: 299 NTHEGGTHEEGFRAALTYLVNKFGEEWNLIKKKEDRLTGEDIREGLTAILSIKLKEPQFE 358

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LT 399
            QTK KL ++EV+S V++  ND L  W E++P E K IV+K + A+  R AAR+ARD   
Sbjct: 359 GQTKTKLGNTEVKSFVQTVCNDRLGEWFEKNPAEGKDIVRKAIQAATARIAARKARDLAR 418

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
            RKG+L    LPGKL DC   +P++ ELF+VEGDSAGGSA+QGR    QA+LP+RGKILN
Sbjct: 419 NRKGLLGGGGLPGKLVDCQSTNPEECELFIVEGDSAGGSARQGRDPRTQAVLPIRGKILN 478

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VERAR DK+L + E+  +I+ALGTG+  D FD+ +LRYHK+++M DADVDG HIRTLLLT
Sbjct: 479 VERARIDKVLQNNEVQAVISALGTGV-HDDFDLARLRYHKVVLMADADVDGQHIRTLLLT 537

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             FR M  L+  G +Y+ +PPLY I    +       +   D L+   L+   +L  +  
Sbjct: 538 LLFRFMKPLVEAGHVYLAQPPLYRIKWSNAPHEFAYSDRERDGLVEAGLAAGKKLPKEQG 597



 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 4/86 (4%)

Query: 722 LLDTIFSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L++   + G+K      +QRYKGLGEMN  +LW TT++P  R LL+V + DA++AD++FS
Sbjct: 581 LVEAGLAAGKKLPKEQGIQRYKGLGEMNPEELWTTTMDPAQRVLLQVSLDDAARADEIFS 640

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMGD+VE RR FIQ N+     LDI
Sbjct: 641 ILMGDDVEQRRAFIQRNAKDVRFLDI 666


>gi|225552337|ref|ZP_03773277.1| DNA gyrase, B subunit [Borrelia sp. SV1]
 gi|225371335|gb|EEH00765.1| DNA gyrase, B subunit [Borrelia sp. SV1]
          Length = 634

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 284/639 (44%), Positives = 414/639 (64%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVVDNSIDEALAGFCDRIDVII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+G I+  +F  GI  + + + G +   TGT VTFL  S+IF   D+N
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEIVGESSI-TGTRVTFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + IS+ D+R  + +    +++GGI++FV YL    K     P 
Sbjct: 180 FDVLEKRLKELAFLNDKIYISIEDRRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSQPY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE+R +VE  V + L   +
Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE   I+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCASKNPLEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538

Query: 549 SLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  +E+  E +L +                 G ++   L         +D   +   
Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNGISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    IE   I      +  +     +     N +N 
Sbjct: 594 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F      I +  I      +  +  +               LD+I +  R GIS+Q
Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNGISLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627

Query: 798 PS-ALDI 803
               LD+
Sbjct: 628 NVINLDV 634


>gi|145577987|gb|ABP82712.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar wratislaviensis]
          Length = 632

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 284/589 (48%), Positives = 403/589 (68%), Gaps = 6/589 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A E IMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEAIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDD 593
           +GK +QY  +++ LE  L       +         G ++   L     D
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETAMD 585



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/466 (19%), Positives = 159/466 (34%), Gaps = 47/466 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +++        +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWET ++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETAMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|145577999|gb|ABP82718.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar roskildiensis]
          Length = 632

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 285/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPIGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+ Y  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNERYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 93/469 (19%), Positives = 159/469 (33%), Gaps = 53/469 (11%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAG---GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
            VEG   G     A Q   R    I                   ++            G 
Sbjct: 241 YVEGSKDGIQVEVALQYNERYTNHIY----------------SFTNNIHTYEGGTHEVGF 284

Query: 486 GQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------I 537
                 +      K  I+ DAD +  G  +R  L      + P+    G           
Sbjct: 285 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 344

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRN 589
           +     +      +++ +  ++   +I+        +  +++       K  +  + L  
Sbjct: 345 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 404

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
            + D    D  I + Y     +    A      + ++   +   + +    RL+ I    
Sbjct: 405 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 464

Query: 650 EKSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNR 696
           E     +        + DI   R  +        V    +      F +    + I    
Sbjct: 465 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 524

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETT 754
           I       L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT
Sbjct: 525 IY-IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETT 583

Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           ++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 584 MDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|315640352|ref|ZP_07895468.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
           italicus DSM 15952]
 gi|315483888|gb|EFU74368.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
           italicus DSM 15952]
          Length = 649

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 293/650 (45%), Positives = 417/650 (64%), Gaps = 9/650 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  ++       YDA  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEEEKSLVERAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV+D+GRGIP D+  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATKIEVVVEKDNSITVTDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +++ +EG +Y   +  G + + L + G   +  GTEV F
Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVKVFKEGKVYFQEYHRGAVVSDLTIIGET-DRHGTEVHF 178

Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF     F ++ L  R+REL+FLN  + IS+ DKR  E       ++GGI+++V 
Sbjct: 179 VPDPEIFRETTTFEFEKLATRVRELAFLNRGLHISIEDKRKEEAEVRAFHFEGGIKSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+  K  L   PI ++G++ +IS++++M++ DGYH N+L F NNI   +GGTH SG ++
Sbjct: 239 HLNATKTVLFPEPIYLEGNQQDISVEVSMQYTDGYHTNLLSFANNIHTYEGGTHESGFKT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  K    ++   ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR+
Sbjct: 299 ALTRVINDYARKQKLMRESDENLSGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRT 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           V +   ++  + +L E+P   + IV+K L AS  R AA+RAR++TRRKG L+I+SLPGKL
Sbjct: 359 VTDRLFSEHFAKFLMENPTVGRQIVEKGLLASKARLAAKRAREVTRRKGALEISSLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS R+  K ELF+VEGDSAGGSAKQGR RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSREADKCELFIVEGDSAGGSAKQGRDREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLYG+ +GK++ YV+  +  ED L     S       + +      ++ +     
Sbjct: 538 YIAQPPLYGVKQGKNITYVQPGKQAEDELKQIVSSLPASPKPNVQRYKGLGEMDDHQLWE 597

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +D   +          IE   +  +   +  +     +        N 
Sbjct: 598 TTMDPENRMMLQVSVDDAIEADQVFEMLMGDRVEPRRAFIEENAHYVKNL 647



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+  QLWETT++P+ R +L+V + DA +AD +F  LMGD VEPRR FI+E
Sbjct: 580 NVQRYKGLGEMDDHQLWETTMDPENRMMLQVSVDDAIEADQVFEMLMGDRVEPRRAFIEE 639

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 640 NAHYVKNLDI 649


>gi|145578019|gb|ABP82728.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar tolworthi]
          Length = 632

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/585 (48%), Positives = 404/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D   V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDETNV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 153/447 (34%), Gaps = 47/447 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802
           F  LMGD+VEPRR FIQEN+     LD
Sbjct: 606 FEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|331092116|ref|ZP_08340947.1| DNA gyrase subunit B [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402317|gb|EGG81888.1| DNA gyrase subunit B [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 638

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 296/585 (50%), Positives = 397/585 (67%), Gaps = 4/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I V
Sbjct: 2   STEYGADQIQILEGLEAVRKRPGMYIGSTS-VRGLHHLVYEIVDNAVDEALAGYCDTIYV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N D S TV DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  SINKDNSITVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ I ++G IY+  +  G +   L VTG+     TGT+VTFLP  +IF   
Sbjct: 121 VVNALSEWLEVEIYKDGKIYKQRYERGHVMYKLEVTGTCEPEKTGTKVTFLPDKEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YDTL+ R RE++FL  +++I L D+R  E  E T  Y+GGI+ FVSYL++ K PL +
Sbjct: 181 IFDYDTLKQRFREMAFLTRNLKIILADERPEERIEKTFHYEGGIKEFVSYLNKSKTPLYE 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +D +++++AM+ ND Y +N   F NNI   +GGTH+ G R+ALT+    Y  
Sbjct: 241 QIIYCEGEKDGVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIVGFRNALTKTFNDYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K  + ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V++ V+  L 
Sbjct: 301 KNKLLKDSEPNLSGEDIREGLTAIVSVKIGDPQFEGQTKQKLGNSEARGAVDNIVSTQLQ 360

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK+ V+K + A   R+AAR+ARDLTRRK  L+  SLPGKLADCS++DP   
Sbjct: 361 IFLEQNPSVAKMTVEKSVMAQRAREAARKARDLTRRKSALETMSLPGKLADCSDKDPANC 420

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+ ++ EI  +ITA GTGI
Sbjct: 421 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 480

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + 
Sbjct: 481 -HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKLE 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           + K + Y   ++ L   L                 G +    L  
Sbjct: 540 KNKKVWYAYSDDELNQILTEVGRDGNNKIQRYKGLGEMDAEQLWE 584



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 86/161 (53%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G  ++ DI   R  + +      ++G+ I +    +  R   + I+E Y+      +  
Sbjct: 478 TGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYK 537

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           L  N           L   +  +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 538 LEKNKKVWYAYSDDELNQILTEVGRDGNNKIQRYKGLGEMDAEQLWETTMSPEHRVLLRV 597

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + + +  + D  F+ LMGD+VEPRREFI+EN+     LD+
Sbjct: 598 TMDEETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLDV 638


>gi|224139720|ref|XP_002323244.1| predicted protein [Populus trichocarpa]
 gi|222867874|gb|EEF05005.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 269/595 (45%), Positives = 366/595 (61%), Gaps = 16/595 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  + +Y +D IQ+LKGL+ V+KRP MYIG T G  GLHH++YE+LDNA+DE+  GYA 
Sbjct: 60  ESAGSKAYGSDQIQVLKGLEPVRKRPGMYIGST-GPRGLHHLVYEILDNAVDEAQAGYAS 118

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120
            I V L+ D S +++DNGRGIPTDLH E   SA E ++T LHAGGKF      Y+VSGGL
Sbjct: 119 TINVVLHSDNSVSITDNGRGIPTDLHPETKKSALETVLTVLHAGGKFGGSNSGYRVSGGL 178

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ + R+G  Y+  +  G     L        +    GT + F P
Sbjct: 179 HGVGLSVVNALSEELEVTVWRDGKQYQQKYSRGNPVTTLTCHELPVESKERRGTHIKFWP 238

Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             ++F+    F+Y T+  R+REL+FLN        D    + +    FY GG+  +V++L
Sbjct: 239 DKEVFTTEIQFDYHTIAGRVRELAFLNP------KDNDPEKNQFDEHFYAGGLVEYVNWL 292

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +  KKPL       +   D I+ID+A++W  D Y + +L + N+I   DGGTH+ G +++
Sbjct: 293 NTDKKPLHDVLG-FRKEVDGIAIDMALQWCSDAYSDTILGYANSIRTVDGGTHIDGAKAS 351

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +  +KS   K    S+ G+  REG T ++S+K+P P F  QTK +L + EVR V
Sbjct: 352 LTRTLNNLGKKSKVIKDKDMSLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKV 411

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +LE HP     I+ K L+A     AA+RAR+L R+K VL  +SLPGKLA
Sbjct: 412 VEQSIQEYLTEYLELHPDALDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLA 471

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP++SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  ++EI 
Sbjct: 472 DCSSTDPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQ 531

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI  LG G+  + F  + LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L   G +Y
Sbjct: 532 NLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIY 591

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +  PPLY + RGK   Y  D+  L+    +   +           G +    L  
Sbjct: 592 VGVPPLYKVERGKQAYYCFDDAELKKIQRSFPQNASYNIQRFKGLGEMMPAQLWE 646



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 125/340 (36%), Gaps = 38/340 (11%)

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556
           K+I   D  + G H+R  L      ++PS    G        P +  +      +Y+ + 
Sbjct: 364 KVIKDKDMSLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVEQSIQEYLTEY 423

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKT 611
             L    ++  LS+ +     +       +L  +  +  +  +   + D     P   + 
Sbjct: 424 LELHPDALDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTDPEESEI 483

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL-------- 663
           FI +   +G    +       ++       LN         +      + IL        
Sbjct: 484 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKG 543

Query: 664 --VKRIARGVQEQFVLEGS---------SIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
              K+ A    +  +L  +          + +F  +Y+R   +                 
Sbjct: 544 EDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERG 603

Query: 713 KIKITGPCSLLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           K            +  I R        ++QR+KGLGEM  +QLWETT++P+ R L ++ +
Sbjct: 604 KQAYYCFDDA--ELKKIQRSFPQNASYNIQRFKGLGEMMPAQLWETTMDPERRVLKQLVV 661

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS---LPSA-LDI 803
            DA++A+ +FS LMG  V+ R+E IQ N+   +    LDI
Sbjct: 662 EDAAEANIVFSSLMGTRVDFRKELIQ-NAASMINVDHLDI 700


>gi|145578017|gb|ABP82727.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar tohokuensis]
          Length = 632

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 283/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLSTRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QA LPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQATLPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 89/466 (19%), Positives = 160/466 (34%), Gaps = 47/466 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    +  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLSTRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +++        +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQATLPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|145578001|gb|ABP82719.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar shandongiensis]
          Length = 632

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 282/585 (48%), Positives = 401/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
            +++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR  K+LS+ E+ T+ITA+GT I
Sbjct: 418 GIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLGKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 6/199 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++   +  I       +         ++  
Sbjct: 437 RHFQAIL--PLKGKIINVEKARLGKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIM 494

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I       L  +  G KI+       L+ I
Sbjct: 495 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKI 553

Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+
Sbjct: 554 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613

Query: 785 VEPRREFIQENSLPS-ALD 802
           VEPRR FIQEN+     LD
Sbjct: 614 VEPRRNFIQENAKYVKNLD 632


>gi|29374666|ref|NP_813818.1| DNA gyrase subunit B [Enterococcus faecalis V583]
 gi|257418838|ref|ZP_05595832.1| DNA gyrase B gyrB [Enterococcus faecalis T11]
 gi|29342124|gb|AAO79890.1| DNA gyrase, B subunit [Enterococcus faecalis V583]
 gi|257160666|gb|EEU90626.1| DNA gyrase B gyrB [Enterococcus faecalis T11]
          Length = 642

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 289/638 (45%), Positives = 414/638 (64%), Gaps = 4/638 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             YDA  IQ+L+GL+AV+KRP MYIG T GE GLHH+++E++DN+IDE+L G+A  I V 
Sbjct: 6   QEYDASQIQVLEGLEAVRKRPGMYIGSTSGE-GLHHLVWEIVDNSIDEALAGFAKSIQVI 64

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  D S TV D+GRGIP  +  + G  A E + T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 65  IEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 124

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L +R+ ++G +Y   +  G + + L V     +  GT V F+P  +IF+    
Sbjct: 125 VNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHFIPDPEIFTETTV 183

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           +++D L  R+REL+FLN  + IS+ D+R  +  +    Y+GGI+++V +L+ +K  +   
Sbjct: 184 YDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVEHLNANKDVIFPE 243

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI I+G + +I+++++M++ DGYH N+L F NNI   +GGTH SG +++LTR I  Y  K
Sbjct: 244 PIFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKTSLTRVINDYARK 303

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K++   + G+D REG T+V+SIK PDP+F  QTK KL +SEVR+V +   ++  + 
Sbjct: 304 QKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEYFTK 363

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P   K IV+K + AS  R AA+RAR++TRRKG L+I++LPGKLADCS +DP+K E
Sbjct: 364 FLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLADCSSKDPEKCE 423

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG G
Sbjct: 424 LFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFG 483

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++YI +PPLYG+ +
Sbjct: 484 ED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPLYGVKQ 542

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK++ YV+  +  E+ L               +      ++ +       +D   +    
Sbjct: 543 GKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTMDPEKRLMAR 602

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                 IE   I  +   +  +     +        N 
Sbjct: 603 VSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 640



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QRYKGLGEM+  QLWETT++P+ R + RV + DA +AD +F  LMGD VEPRR FI+E
Sbjct: 573 SVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 632

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 633 NAHYVKNLDI 642


>gi|72160412|ref|YP_288069.1| DNA gyrase subunit B [Thermobifida fusca YX]
 gi|71914144|gb|AAZ54046.1| DNA gyrase subunit B [Thermobifida fusca YX]
          Length = 661

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 278/595 (46%), Positives = 378/595 (63%), Gaps = 12/595 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YDA SI +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE+L GYA  I VTL
Sbjct: 18  AYDARSITVLEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGYATAIEVTL 76

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V+DNGRGIP D H  E   A E+++T LHAGGKF+ KSY VSGGLHGVGVSVV
Sbjct: 77  LADGGVRVTDNGRGIPVDPHPVEKKPAVELVLTTLHAGGKFDSKSYAVSGGLHGVGVSVV 136

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L++ ++R+G ++  S+        L +     ++TGT++TF P   IF    FN
Sbjct: 137 NALSTRLEVEVRRDGYLWTQSYEMTKPVTEL-IRREPTDETGTQITFWPDGSIFETTTFN 195

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSP----EPREITMFYKGGIEAFVSYLDRHKKPLM 244
           ++TL  RL+E++FLN  + I++ D+R       P   T +Y+GG+  FV +L+  K+P+ 
Sbjct: 196 FETLSRRLQEMAFLNKGLSITIRDERPEFVGDSPVTQTYYYEGGLSDFVRHLNATKEPVH 255

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            S I  + + D I++++AM+WN  Y  +V  F N I   +GGTH  G R+ALT  +  Y 
Sbjct: 256 SSIIAFEEAGDGIAVEIAMQWNQSYTSSVHTFANTINTAEGGTHEEGFRAALTSIVNRYA 315

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 +    ++ GDD REG T+++S+K+ DP+F  QTK KL ++E +S V+   ++ L
Sbjct: 316 RDQKLLRDKDENLTGDDIREGLTAIVSVKLADPQFEGQTKTKLGNTEAKSFVQKVCHEYL 375

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL+ +P EAK IV K   A+  R AAR+AR+LTRRK +L+  SLPGKLADC   DP++
Sbjct: 376 RDWLDRNPGEAKDIVTKATQAARARIAARQARELTRRKTLLESTSLPGKLADCQSTDPER 435

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E+++VEGDSAGGSAK GR    QAILP+RGKILNVE+AR D++L + E+  +ITALGTG
Sbjct: 436 CEVYIVEGDSAGGSAKGGRDPYYQAILPIRGKILNVEKARIDRILKNNEVQAIITALGTG 495

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  D FDI KLRYHKII+M DADVDG HIRTLLLT  FR M  LI  G +Y+ +PPLY I
Sbjct: 496 I-HDDFDITKLRYHKIILMADADVDGQHIRTLLLTLLFRFMKPLIEAGHVYLAQPPLYKI 554

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
                   V        Y   +   +        K      DL        +++ 
Sbjct: 555 KWDPRGTDVD-----YAYSDRERDEKIAAGIAAGKKDPRPRDLVQRFKGLGEMNP 604



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMN S+LWETT++P+ R LL+V + DA+QAD++FS LMG++VE RR FIQ N
Sbjct: 593 VQRFKGLGEMNPSELWETTMDPERRVLLQVTLDDAAQADEMFSVLMGEDVESRRAFIQRN 652

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 653 ARDVRFLDI 661


>gi|94471626|gb|ABF21079.1| DNA gyrase subunit B [Acholeplasma hippikon]
          Length = 599

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 280/588 (47%), Positives = 393/588 (66%), Gaps = 6/588 (1%)

Query: 16  QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCT 75
           QIL+GL+AV+KRP MYIG T GE GLHH+++E++DN+IDE+L GYA+ + + +  D    
Sbjct: 1   QILEGLEAVRKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYANEVNIEILPDNIIK 59

Query: 76  VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWL 135
           V DNGRGIP D+H + G  A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W 
Sbjct: 60  VRDNGRGIPVDIHPKTGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWY 119

Query: 136 KLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQH 194
            ++I ++G IYE  +  GI    L        +TGTE TFL    IF+    +NY+TL++
Sbjct: 120 LVQIHKDGKIYEQKYERGIPAYDLREI-GTTTETGTETTFLADPLIFTETTVYNYETLRN 178

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           R+++L+FLN  ++++L DKR   P +    Y+GGI  ++ +L++ K  + Q  I I   +
Sbjct: 179 RVQQLAFLNKGIKLTLEDKRIEHPMKEEFHYEGGIVEYIQHLNQSKSKIHQDAIYIDKEQ 238

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D +++++A+++ D Y  N+  FTNNI   +GG H  G + ALTR I+ Y + +       
Sbjct: 239 DGVTVEIALQYVDTYTPNIYSFTNNINTTEGGMHEDGFKLALTRVISKYADDNQLK--KD 296

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            ++ G+D REG T+++S+K P+P+F  QTK KL + EVR++     ++ L  +L E+P +
Sbjct: 297 DAISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAIASQITSEALERFLLENPNQ 356

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AK+IV+KV+ A+  R AAR+A++L RRK  LD      KLADC  +DP+KSE+++VEGDS
Sbjct: 357 AKLIVEKVISATRARVAARKAKELARRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDS 416

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           AGGSAKQGR  E QAI+PLRGK+LNVE+ RFDKML+++EI  LI A GTGIG D FDINK
Sbjct: 417 AGGSAKQGRDSEFQAIMPLRGKVLNVEKVRFDKMLNNKEIVNLIQAFGTGIG-DEFDINK 475

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYHKI+IMTDADVDGAHIRTLLLTF FR    LI +G++Y  +PPLY ++ GK++QY  
Sbjct: 476 LRYHKIVIMTDADVDGAHIRTLLLTFLFRHFKPLIEHGYVYAAQPPLYKVSYGKNIQYAY 535

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +E L   L +      I+ +     +  +      +D A +    IK
Sbjct: 536 SDEQLNTILASIEGKPSIQRYKGLGEMNYEQLWETTMDPAARTLLQIK 583



 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 10/133 (7%)

Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSLICNG 711
           +  DI   R  + V      ++G+ I +    +  R F   IE  Y+      L  +  G
Sbjct: 469 DEFDINKLRYHKIVIMTDADVDGAHIRTLLLTFLFRHFKPLIEHGYVYAAQPPLYKVSYG 528

Query: 712 DKIKITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             I+       L+TI +   G+   S+QRYKGLGEMN  QLWETT++P  R+LL++K+ D
Sbjct: 529 KNIQYAYSDEQLNTILASIEGK--PSIQRYKGLGEMNYEQLWETTMDPAARTLLQIKLED 586

Query: 770 ASQADDLFSRLMG 782
           A +AD +FS LMG
Sbjct: 587 AIEADQVFSMLMG 599


>gi|257127028|ref|YP_003165142.1| DNA gyrase subunit beta [Leptotrichia buccalis C-1013-b]
 gi|257050967|gb|ACV40151.1| DNA gyrase, B subunit [Leptotrichia buccalis C-1013-b]
          Length = 660

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 258/610 (42%), Positives = 379/610 (62%), Gaps = 30/610 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++Y A++I +L+GL+AV+KRP MYIG T    GLHH+++E++DN++DE+L G  D ITV
Sbjct: 2   DNNYGAEAITVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNSVDEALAGICDKITV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +       VSDNGRGIP  +H + G S  EV++T LHAGGKF+  +YKVSGGLHGVGVS
Sbjct: 61  KILEGNIIEVSDNGRGIPVGMH-KTGKSTLEVVLTVLHAGGKFDNDNYKVSGGLHGVGVS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQ 185
           VVNALS WL+  + R+G I+  ++  G+  +P+   G A +   GT V F    +IF   
Sbjct: 120 VVNALSEWLEATVTRDGKIFRQTYERGVPTSPVEEIGVADDSAHGTVVRFKADDEIFETT 179

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-ITMFYKGGIEAFVSYL-------- 236
            ++Y  L+ RL+EL++LN  ++I L D+R+ E  +     ++GGI+ F++ +        
Sbjct: 180 VYDYSVLESRLKELAYLNKGLKIELADERNAENVKAEEFLFEGGIKDFLNEIIDEEKIID 239

Query: 237 ---DRHKKPLMQSPIRIQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIP 281
                     ++    ++                 + +++AM +     E V  F NNI 
Sbjct: 240 DVIYMADTMQIEEAKEVEAEDENGNIVIKQRSAKFVEVEIAMNYTTSQRETVYSFVNNIN 299

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH+SG R+ALTR I    ++    K    +  G D REG   V+S+K+P+P+F  
Sbjct: 300 THEGGTHVSGFRTALTRTINDIAKQMNLIKDKNGTFQGTDVREGLVCVISVKIPEPQFEG 359

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SEV  +V + V   L  +LE+HP  A+ +++K++ +   R+AA++AR+L  R
Sbjct: 360 QTKTKLGNSEVTGIVSNIVGSNLKFYLEDHPKAAEKVIEKMVMSKRAREAAKKARELVLR 419

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  L++ SLPGKLADCS +DP +SE+F+VEG+SAGGSAKQGR R  QAILPLRGKILNVE
Sbjct: 420 KNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKILNVE 479

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           ++   K L + EI  +ITA G G G++  D+ KLRYHKI+IMTDADVDGAHIRTL+LTFF
Sbjct: 480 KSGIHKALENAEIRAMITAFGAGFGEEI-DLKKLRYHKIVIMTDADVDGAHIRTLMLTFF 538

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSK 579
           +R +  LI+ G++YI +PPLY I  GK+++Y   ++ ++     +     +         
Sbjct: 539 YRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQVTRVLENEGRKYTIQRYKGL 598

Query: 580 GVISKNDLRN 589
           G ++   L  
Sbjct: 599 GEMNPEQLWE 608



 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/79 (58%), Positives = 62/79 (78%), Gaps = 2/79 (2%)

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           + + GRK  ++QRYKGLGEMN  QLWETTL+P+ R+LL+V + DAS AD +F+ LMGD+V
Sbjct: 583 LENEGRK-YTIQRYKGLGEMNPEQLWETTLDPEVRTLLKVSMEDASYADKMFNILMGDKV 641

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRR+FI++N+     LDI
Sbjct: 642 EPRRKFIEDNANYVRNLDI 660


>gi|126697163|ref|YP_001092049.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9301]
 gi|126544206|gb|ABO18448.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9301]
          Length = 655

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 283/616 (45%), Positives = 402/616 (65%), Gaps = 15/616 (2%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+    N  ++ Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH+IYEV+DN++DE+
Sbjct: 1   MSEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLIYEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+ D I + L  DGS  +SDNGRGIPTD+H   G SA E ++T LHAGGKF    YKV
Sbjct: 60  LAGHCDHIEIVLRADGSALISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTEVT 174
           SGGLHGVG+SVVNALS W+K+ + R+G+ +   F  GI    L      G  +  GT + 
Sbjct: 120 SGGLHGVGISVVNALSEWVKVTVYRDGSEFNQRFEKGISKGELESKKQTGKSSKKGTTIC 179

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGI 229
           F P   IFS   +F Y  L  RLREL++LN  V+I   D+R+       +E    Y+GGI
Sbjct: 180 FKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKEEIYLYQGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V Y++  K+ +    I +   ++N+ ++ A++W  D Y +N+L F NNI   DGGTH
Sbjct: 240 KEYVEYMNAEKESIHPEIIYVDSQKENVYVEAALQWCSDVYSDNILGFANNIRTIDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR   +  +K    K  ++++ G++ REG T VLS+K+PDP F  QTK KL 
Sbjct: 300 IEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S + + L+ ++E +P    +I++K + +    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI +LITALG GI  + FD + LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQSLITALGLGIKGEEFDESSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQREL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKND 586
           +  GF+YI  PPLY + RGK+  Y  +E  L+D +    ++ +  I+ F     ++ K  
Sbjct: 540 VEKGFIYIACPPLYKVERGKNHNYCYNENQLKDTIQGFGENANYNIQRFKGLGEMMPKQL 599

Query: 587 LRNFIDDALKIDKLIK 602
               ++   ++ K ++
Sbjct: 600 WDTTMNPQTRMMKRVE 615



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNR-IEENYLTILSLIC 709
              + S +   R+   +     ++G+ I +    F  +Y+R    +         L  + 
Sbjct: 499 EEFDESSLRYHRVV--IMTDADVDGAHIRTLLLTFFYRYQRELVEKGFIYIACPPLYKVE 556

Query: 710 NGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
            G           L DTI   G     ++QR+KGLGEM   QLW+TT+NP TR + RV+I
Sbjct: 557 RGKNHNYCYNENQLKDTIQGFGENANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEI 616

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            DA +AD +F+ LMGD+V PRREFI+ +   S LD
Sbjct: 617 EDALEADRIFNILMGDKVAPRREFIETH--SSNLD 649


>gi|317471524|ref|ZP_07930875.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA]
 gi|316901019|gb|EFV22982.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA]
          Length = 637

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/618 (40%), Positives = 371/618 (60%), Gaps = 8/618 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + + +YDA+SI +L+GL+AV+KRP MYIG      GL+H+IYE++DN++DE L G+ D I
Sbjct: 1   MSSQNYDANSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNSVDEFLAGHCDEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVTL  DG+  + DNGRGIP  ++++ G+SA E++ T LHAGGKF    YK+SGGLHGVG
Sbjct: 60  TVTLKDDGTAVIEDNGRGIPVGINEQTGLSAVEMVFTMLHAGGKFGDGGYKISGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
            SVVNALS+WLK+ +K++GNIYE  F  G +  PL V GS   ++TGT++ FLP  +IF 
Sbjct: 120 ASVVNALSTWLKVTVKQDGNIYEECFERGKVTEPLRVIGSCRKSETGTKIRFLPDPEIFD 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F    +++RL E ++LN  ++I  I++RS E  E+      GI A+V  L+  K  L
Sbjct: 180 KTYFKAAMIRNRLHETAYLNPELKIHYINERSGEETEVLYHEPEGICAYVKKLNDGKHVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              P+  +   + I  ++A ++ + + EN+L F NNI   +GGTH++G +S  T  +  Y
Sbjct: 240 H-DPVYYKREINGIEAEIAFQYTEDFGENILGFCNNIYTTEGGTHITGFKSKFTAVMNQY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             +    K+   +  G D R G T+++S+K P+PRF  QTK KL + +   VV     D 
Sbjct: 299 ARELGILKEKDTNFTGADVRNGMTAIISVKHPEPRFEGQTKTKLDNPDANKVVGEITGDE 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
              + +++    K ++     ++ +R A  +A+     +  L I S  GKL++C  R P+
Sbjct: 359 TVLFFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNLLVRQKLSIDS-NGKLSNCESRKPE 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I   G 
Sbjct: 418 ECEIFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKATMDKVLANAEIKTMINTFGC 477

Query: 484 GIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           G  +   + FDI KLRY KI+IMTDADVDGAHI TLLLTFF+R MP LI +G +Y+  PP
Sbjct: 478 GFSEGYGNDFDIEKLRYQKIVIMTDADVDGAHIATLLLTFFYRFMPELITHGHVYLATPP 537

Query: 541 LYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY  I +     Y+ D+ +LE Y         ++ +     + +       +D   +  K
Sbjct: 538 LYKAIPKKGKETYLFDDTALEKYKAAHKGPFTLQRYKGLGEMDASQLWETTLDPETRTLK 597

Query: 600 LIKDFYPNHDKTFIEQAV 617
            I+              +
Sbjct: 598 QIEIEDARMASDVTSMLM 615



 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 15/269 (5%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +   ++  + E++  + L+ Q LS +      +       +   FI +        K
Sbjct: 376 CAEKSAKIRKAE-EKAKTNLLVRQKLSIDSNGKLSNCESRKPEECEIFIVEGDSAGGSAK 434

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +  +   +   + N E      V   +++   +N       + +    +   +
Sbjct: 435 TARNRRTQAIL--PIRGKILNVEKATMDKVLANAEIKTMINTFGCGFSEGYGNDFDIEKL 492

Query: 663 LVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSLI---CNGDKIK 715
             ++I   +     ++G+ I +    F  ++             T          G +  
Sbjct: 493 RYQKIV--IMTDADVDGAHIATLLLTFFYRFMPELITHGHVYLATPPLYKAIPKKGKETY 550

Query: 716 ITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +    +L         KG  ++QRYKGLGEM+ASQLWETTL+P+TR+L +++I DA  A 
Sbjct: 551 LFDDTALEKY--KAAHKGPFTLQRYKGLGEMDASQLWETTLDPETRTLKQIEIEDARMAS 608

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D+ S LMG EV PRR+FI +N+  + LDI
Sbjct: 609 DVTSMLMGSEVPPRRQFIYDNAEDAMLDI 637


>gi|238917147|ref|YP_002930664.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750]
 gi|238872507|gb|ACR72217.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750]
          Length = 638

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 248/590 (42%), Positives = 361/590 (61%), Gaps = 8/590 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + YDA+SI IL+GL+AV+ RP MYIG   G  GL+H+IYE+ DN++DE L G+   I
Sbjct: 1   MAANKYDANSISILEGLEAVRMRPGMYIGSV-GTKGLNHLIYEIADNSVDEHLAGFCTQI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTLN DG+ T+ DNGRGIP  +H + GI A EV+ T LHAGGKF    YK+SGGLHGVG
Sbjct: 60  NVTLNDDGTATIKDNGRGIPIGIHPKAGIPAVEVVFTVLHAGGKFGDGGYKISGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
            SVVNALS WL++ I+ +G +Y+  +  G    PL   G+   NDTGT VTFLP  +IF 
Sbjct: 120 ASVVNALSVWLEVEIRVDGGVYKQRYERGKATAPLEKIGTCRKNDTGTTVTFLPDGEIFE 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F  D+++ RL E ++LN  + I   DKR     + T     G++A++  L+  K+ +
Sbjct: 180 KTRFKADSIKSRLHETAYLNPGLTIEFEDKRKGSEDKETFHEPDGLKAYIKDLNNGKETV 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               +  +  +++I +++A ++ + + EN+L F NNI  ++GGTH++G ++  T  I  Y
Sbjct: 240 C-DIVYFKKKQEDIEVEVAFQFVNEFEENILGFCNNIYTQEGGTHITGFKTKFTMIINQY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             +    K    +  G D R G T+V+++K P PRF  QTK KL + +  +VV +   D 
Sbjct: 299 ARELGILKDKDANFTGLDVRNGMTAVVAVKHPAPRFEGQTKTKLDNPDAGTVVANVTGDE 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +  + + H  +   ++     ++ +R A  +A+     K    I S  GKLA+C  ++P+
Sbjct: 359 VQLYFDRHLDDLNAVIACAEKSAKIRKAEEKAKTNMLTKQKFSIDS-NGKLANCESKNPE 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I +   
Sbjct: 418 ECEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASIDKVLANAEIKTMINSFNC 477

Query: 484 GI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           G      + FDI++LRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI+ G +YI  PP
Sbjct: 478 GFLEGYGNDFDISRLRYNKIIIMTDADVDGAHIDTLLLTFFYRFMPELINQGHVYIATPP 537

Query: 541 LYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY  + +    +Y+ D+++LEDY    +            G +  + L  
Sbjct: 538 LYKVVPKKGEGEYLYDDKALEDYRKKHTSGTFTLQRYKGLGEMDPDQLWE 587



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 51/68 (75%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+  QLWETTLNP+TR L +V+I DA  A ++ + LMG +V PRREFI  
Sbjct: 570 TLQRYKGLGEMDPDQLWETTLNPETRILKQVEIEDARLATEVTAMLMGTDVPPRREFIYT 629

Query: 795 NSLPSALD 802
           ++  + +D
Sbjct: 630 HANEAEID 637


>gi|123969376|ref|YP_001010234.1| DNA gyrase subunit B [Prochlorococcus marinus str. AS9601]
 gi|123199486|gb|ABM71127.1| DNA gyrase, subunit B [Prochlorococcus marinus str. AS9601]
          Length = 655

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 280/616 (45%), Positives = 398/616 (64%), Gaps = 15/616 (2%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+    N  ++ Y AD IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+
Sbjct: 1   MSEDKRSNKISNDYGADQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+ D I + L  DGS  +SDNGRGIPTD+H   G SA E ++T LHAGGKF    YKV
Sbjct: 60  LAGHCDHIEIVLRADGSAFISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVT 174
           SGGLHGVG+SVVNALS W+ + + R+G+ +   F  G+    L            GT + 
Sbjct: 120 SGGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGVSKGELQAKKQTGKPFKKGTSIC 179

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGI 229
           F P   IFS   +F Y  L  RLREL++LN  V+I   D+R+       +E    Y+GGI
Sbjct: 180 FKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKEEIYLYQGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V Y++  K  +    I +   ++N+ ++ A++W  D Y +N+L F NNI   DGGTH
Sbjct: 240 KEYVEYMNAEKDSIHPEIIYVDSQKENVYVEAALQWCSDVYSDNILGFANNIRTIDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR   +  +K    K  ++++ G++ REG T VLS+K+PDP F  QTK KL 
Sbjct: 300 IEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S + + L+ ++E +P    +I++K + +    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDSLIGEALTKYMEFNPAILDLILEKAIQSFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI +LITALG GI  + FD + LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQSLITALGLGIKGEEFDESSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQREL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKND 586
           +  GF+YI  PPLY + RGK+  Y  +E  L+D +    ++ +  I+ F     ++ K  
Sbjct: 540 VEKGFIYIACPPLYKVERGKNHNYCYNENQLKDTIQGFGENANYNIQRFKGLGEMMPKQL 599

Query: 587 LRNFIDDALKIDKLIK 602
               ++   ++ K ++
Sbjct: 600 WDTTMNPQTRMMKRVE 615



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNR-IEENYLTILSLIC 709
              + S +   R+   +     ++G+ I +    F  +Y+R    +         L  + 
Sbjct: 499 EEFDESSLRYHRVV--IMTDADVDGAHIRTLLLTFFYRYQRELVEKGFIYIACPPLYKVE 556

Query: 710 NGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
            G           L DTI   G     ++QR+KGLGEM   QLW+TT+NP TR + RV+I
Sbjct: 557 RGKNHNYCYNENQLKDTIQGFGENANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEI 616

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS--LP-SALDI 803
            DA +AD +F+ LMGD+V PRREFI+ +S  L  + LDI
Sbjct: 617 EDALEADRIFNILMGDKVAPRREFIETHSGNLDMATLDI 655


>gi|145578025|gb|ABP82731.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           weihenstephanensis]
          Length = 632

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 283/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+D+GRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P ++IF+   
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPAADLKVIGET-DRTGTITRFKPDAEIFTETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  + + LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 135/367 (36%), Gaps = 33/367 (8%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525
             ++            G       +      K  I+ DAD +  G  +R  L      + 
Sbjct: 267 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 326

Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571
           P+    G           +     +      +++ +  ++   +I+        +  +++
Sbjct: 327 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 386

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                  K  +  + L   + D    D  I + Y     +    A      + ++   + 
Sbjct: 387 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 446

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR-------GVQEQFVLE 678
             + +    RL+ I    E     +        + DI   R  +        V    +  
Sbjct: 447 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRT 506

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736
               F +    + I    I       L  +  G KI+       L+ I +    +    +
Sbjct: 507 LLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGI 565

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+
Sbjct: 566 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 625

Query: 797 LPS-ALD 802
                LD
Sbjct: 626 KYVKNLD 632


>gi|167770843|ref|ZP_02442896.1| hypothetical protein ANACOL_02196 [Anaerotruncus colihominis DSM
           17241]
 gi|167666883|gb|EDS11013.1| hypothetical protein ANACOL_02196 [Anaerotruncus colihominis DSM
           17241]
          Length = 662

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 281/636 (44%), Positives = 382/636 (60%), Gaps = 15/636 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              YD   IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DN+IDE+L G+   I V
Sbjct: 26  EQEYDGSQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEIVDNSIDEALAGHCTKIEV 84

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L       VSDNGRGIP  +  + GI A  V+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 85  DLLPGNIVKVSDNGRGIPVGIQPKLGIPAVTVVFTVLHAGGKFGGSGYKVSGGLHGVGAS 144

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS WL++ +      Y   F  G+   PL  TG    + GT V F   + IF    
Sbjct: 145 VVNALSEWLEVEVCDGSARYYQRFERGVAVEPLKNTGPTE-EKGTSVAFKADAAIFEETT 203

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD--RHKKPL 243
            ++YDTL  RLRE +FLN+ V I L D+R  EP E  + Y+GGI +FV ++   +  +P+
Sbjct: 204 EYDYDTLLRRLREQAFLNAGVYIVLRDQRGTEPVEEHLHYEGGIRSFVEHIHKSKGVEPI 263

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I +     + + ++AM++ND Y + +L F NNI   DGGTH SG ++ALTR +  Y
Sbjct: 264 HDEIIYLAARDGDNTAEVAMQYNDSYTDLILSFANNIHTTDGGTHESGFKTALTRTMNDY 323

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K     KD     G+D  EG T+++S+K+ D +F  QTK +L ++++R++V S V + 
Sbjct: 324 AHKYK-LLKDDEKFSGEDVLEGLTAIVSVKLTDAQFEGQTKARLGNTQMRAMVSSLVYEK 382

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ + EE+P  AK I++K ++AS  R+AARRARD+ RRK  L+ ASLPGKLADCS+R   
Sbjct: 383 LTTYYEENPAVAKAIIEKSINASRAREAARRARDVARRKSALETASLPGKLADCSQRGRD 442

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +E+++VEGDSAGGSAK GR R  QAILPL GK+LNVE+AR DK+  + ++  +ITALGT
Sbjct: 443 GTEIYIVEGDSAGGSAKMGRDRRFQAILPLWGKMLNVEKARLDKVYGNDKLMPVITALGT 502

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG D FDI KLRY K+IIM DADVDG+HIRTLLLTFFFR M  LI +G + I +PPL+ 
Sbjct: 503 GIG-DEFDIEKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPLIEHGHVCIAQPPLFK 561

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           ++RGK ++Y   +E  + Y+         +         G +    L         +D  
Sbjct: 562 VSRGKQVRYAFSDEERDQYIRELCPDGSGKADVQRYKGLGEMDPEQLWET-----TMDPR 616

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +          I    I  V   +        +  
Sbjct: 617 NRTMLRVEMADAIRADEIFTVLMGDKVAPRKDFIEQ 652



 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT++P  R++LRV++ DA +AD++F+ LMGD+V PR++FI++N
Sbjct: 594 VQRYKGLGEMDPEQLWETTMDPRNRTMLRVEMADAIRADEIFTVLMGDKVAPRKDFIEQN 653

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 654 AKYVQNLDI 662


>gi|190710597|gb|ACE95129.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
          Length = 627

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 285/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I    +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHRDGKIQYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 153/463 (33%), Gaps = 50/463 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                +        + DI   R  +        V    +      F +    + I    I
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755
                  L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT+
Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|13507742|ref|NP_109691.1| DNA gyrase subunit B [Mycoplasma pneumoniae M129]
 gi|121890|sp|P22447|GYRB_MYCPN RecName: Full=DNA gyrase subunit B
 gi|44484|emb|CAA37622.1| gyrase B subunit [Mycoplasma pneumoniae]
 gi|1673811|gb|AAB95799.1| DNA gyrase subunit B [Mycoplasma pneumoniae M129]
          Length = 650

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 265/601 (44%), Positives = 380/601 (63%), Gaps = 15/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M DN +  +YD+ SI+IL+GL+AV+KRP MYIG T GE GLHHMI+E++DN+IDE++ G+
Sbjct: 1   MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGST-GEEGLHHMIWEIIDNSIDEAMGGF 59

Query: 61  ADIITVTLNMDGSCT-VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           A  + +TL  D   T V D+GRGIP D+H +   S  E + T LHAGGKF+  SYKVSGG
Sbjct: 60  ASTVKLTL-KDNFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSS  K+ + RE   Y ++F N G +   LV  G    + GT+V F+P 
Sbjct: 119 LHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             +    D+    +  RL++L+FLN  +QI  +D+R   P+  +  Y GG+  ++ +L+ 
Sbjct: 179 FTVMEKSDYKQTVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNN 238

Query: 239 HKKPLMQSPIRIQ----------GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            K+PL +  I  +               I +++A ++N  Y++++  F NNI   +GGTH
Sbjct: 239 EKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTH 298

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + G R+AL + I  +  ++   K+    +  DD  EG T+++SIK P+P++  QTK+KL 
Sbjct: 299 VEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQTKKKLG 358

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V S V++    ++ E+P EA  I++K L A   R  ++ AR+LTRRK   D  
Sbjct: 359 NTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSG 418

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC+ RDP  SEL++VEGDSAGG+AK GR R  QAILPLRGKILNVE++ F+++
Sbjct: 419 SLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSHFEQI 478

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++ EI  L+ A+G GI +  F++ KLRY+KIIIMTDADVDGAHIRTLLLTFFFR M  L
Sbjct: 479 FNNVEISALVMAVGCGI-KPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFRFMYPL 537

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           +  G +YI +PPLY ++      Y++ +  LE++       +         G +    L 
Sbjct: 538 VEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLW 597

Query: 589 N 589
            
Sbjct: 598 E 598



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 1/71 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
            ++QRYKGLGEM+A QLWETT++P  R+LL+V + DAS AD  FS LMGDEV PRREFI+
Sbjct: 580 YNLQRYKGLGEMDAIQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIE 639

Query: 794 ENSLPS-ALDI 803
           +N+     +DI
Sbjct: 640 QNARNVKNIDI 650


>gi|260588813|ref|ZP_05854726.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583]
 gi|260540592|gb|EEX21161.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583]
          Length = 641

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 300/590 (50%), Positives = 399/590 (67%), Gaps = 4/590 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  I+   Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY
Sbjct: 1   MSTEIKT-EYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V++N D S TV DNGRGIP  ++++ GI A EV+ T LHAGGKF    YKVSGGL
Sbjct: 59  CDTIDVSINEDNSITVIDNGRGIPVGINQKAGIPAVEVVFTILHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS+WL++ I  EG IY   +  G     L + G      TGT VTFLP  
Sbjct: 119 HGVGASVVNALSTWLEVTIFHEGKIYRQRYERGKTVYSLKIVGECEPEKTGTMVTFLPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    F++ TL+HR RE++FL   ++I   DKR  E +E+T  Y+GGI+ FV YL++ 
Sbjct: 179 EIFEETIFDFGTLKHRFREIAFLTKGLRIIARDKREEEEKEVTFHYEGGIKEFVQYLNKS 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
              L +  +  +G++D + +++AM+ ND Y EN   F NNI   +GGTH+ G R+ALT+ 
Sbjct: 239 NTALYEEILYFEGNKDGVMVEVAMQHNDAYTENTYGFVNNITTPEGGTHIVGFRNALTKT 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
              Y  K+   K+ ++++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V+  
Sbjct: 299 FNEYARKNKLLKESEQNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDGI 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L  +LE++P  AKII++K L +   RDAAR+AR+LTRRK  LD  SLPGKLADC +
Sbjct: 359 VSNQLEIYLEQNPAVAKIIIEKSLLSQRARDAARKARELTRRKSALDGTSLPGKLADCVD 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR DK+ ++ EI  +IT
Sbjct: 419 KDPSKCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIYANAEIKAMIT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ KP
Sbjct: 479 AFGTGIHED-FDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAKP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PL+ I + K + Y   E+   D L    +           G +  + L  
Sbjct: 538 PLFKIEKNKKIHYAYTEQEQADILAEIGMDGCNIQRYKGLGEMDADQLWE 587



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 10/160 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y+      +  
Sbjct: 482 TGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAKPPLFK 541

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
           +  N             D +  IG  G ++QRYKGLGEM+A QLWETT++P++R L+RV 
Sbjct: 542 IEKNKKIHYAYTEQEQADILAEIGMDGCNIQRYKGLGEMDADQLWETTMDPESRILMRVV 601

Query: 767 ITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + +   S+ D  F+ LMGD+VEPRREFI+EN+  +  LDI
Sbjct: 602 MDEDSTSELDLTFTTLMGDKVEPRREFIEENAKYAKNLDI 641


>gi|89114226|gb|ABD61708.1| DNA gyrase subunit B [Acholeplasma oculi]
 gi|89114230|gb|ABD61710.1| DNA gyrase subunit B [Acholeplasma oculi]
          Length = 594

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/587 (48%), Positives = 391/587 (66%), Gaps = 6/587 (1%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYA  IT+ +       V
Sbjct: 1   ILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYASEITIEVQKGNIIQV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
           +DNGRGIP D+H +    A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W  
Sbjct: 60  TDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWYL 119

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHR 195
           + I ++G IYE  +  GI    L   GS   +TGT  TFL    IF+    +N +TL++R
Sbjct: 120 VEIHKDGKIYEQKYERGIPAYDLRELGSTE-ETGTRTTFLADPLIFTETTVYNLETLKNR 178

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           +++L+FLN  ++++LID R   P + T  Y+GGI  +V +L++ K  + Q  I  +  +D
Sbjct: 179 IQQLAFLNKGLKLTLIDSRLETPYQETFHYEGGIVEYVQFLNQSKTKIHQDVIYTEKEQD 238

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
            +++++AM++ D Y  N+  FTNNI   +GG H  G + ALTR I+ Y +          
Sbjct: 239 GVTVEIAMQFVDSYSPNIHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMK--KDD 296

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            ++G+D REG T+++S+K P+P+F  QTK KL + EVR++    + + L  +L E+P +A
Sbjct: 297 VILGEDAREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQILGESLERFLLENPQQA 356

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K+IV KVL A+  R AAR+A++LTRRK  LD      KLADC  +DP KSE+++VEGDSA
Sbjct: 357 KLIVDKVLLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPMKSEIYIVEGDSA 416

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAKQGR  E QAI+PLRGK+LNVE+AR DKMLS++EI  LI A+GTGI  D FDI KL
Sbjct: 417 GGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGI-SDEFDITKL 475

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RYHKI+IMTDADVDGAHIRTLLLTF FR M  LI  G++Y  +PPLY +T GK+L+YV  
Sbjct: 476 RYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNLKYVYS 535

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           E+ L + L +      I+ +     + ++      +D A +    IK
Sbjct: 536 EDELNETLKSIETKPGIQRYKGLGEMNAEQLWDTTMDPATRTLLQIK 582



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 3/159 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +   +    ++ N +  +       +  +      +V      V    +    
Sbjct: 438 VLNVEKARLDKMLSNKEIVNLIQAMGTGISDEFDITKLRYHKIVIMTDADVDGAHIRTLL 497

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQRY 739
             F F      I +  +      +  +    +   +     L +T+ S   + G  +QRY
Sbjct: 498 LTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNLKYVYSEDELNETLKSIETKPG--IQRY 555

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           KGLGEMNA QLW+TT++P TR+LL++K+ DA +AD +FS
Sbjct: 556 KGLGEMNAEQLWDTTMDPATRTLLQIKLEDAIEADQVFS 594


>gi|307154719|ref|YP_003890103.1| DNA gyrase subunit B [Cyanothece sp. PCC 7822]
 gi|306984947|gb|ADN16828.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7822]
          Length = 640

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 297/586 (50%), Positives = 399/586 (68%), Gaps = 4/586 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 2   TSNYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV+D+GRGIPTD H   G SA E +MT LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  DINPDGSVTVTDDGRGIPTDTHPTTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS W+ + + R+   +   +  GI    L       + TGT V+FLP + IFS   
Sbjct: 121 VVNALSEWVNVTVWRDQKRFTQRYERGIPVTSLESQPETDHSTGTSVSFLPDTQIFSDGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y TL  RLREL++LN+ V+I+  DKR  +PR  +  Y+GGI+ +V+Y+ R K+PL +
Sbjct: 181 EFDYSTLAGRLRELAYLNAGVRITFSDKRLEQPRVESYCYEGGIKEYVAYMCREKQPLHE 240

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             I +QG R+ I I++A++W  D Y++N+L F NNI   DGGTHL GL++ LTR + +  
Sbjct: 241 EIIYVQGERNGIQIEVALQWYIDTYNDNLLGFANNIRTIDGGTHLEGLKAVLTRTLNNVA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K+++ ++ G++ REG T V+S+K+P+P F  QTK KL ++EVR +V+S V + L
Sbjct: 301 RKRNKIKENEPNLAGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +LE HP  A  I++K + A    +AARRAR+L RRK VL+ + LPGKLADCSERDP K
Sbjct: 361 GEYLEFHPQIADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSERDPAK 420

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+F+VEGDSAGGSAKQGR R +QAILPLRGKILN+E+    K+  + EI +LITALG G
Sbjct: 421 SEIFIVEGDSAGGSAKQGRDRRSQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLG 480

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  + FD  +LRYH+IIIMTDAD DG+HIRTLLLTFF+R   S++  G++YI  PPLY +
Sbjct: 481 IKGEEFDAAQLRYHRIIIMTDADYDGSHIRTLLLTFFYRYQRSIVDQGYIYIACPPLYKV 540

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            RGK+ +Y  +E  L+ Y+     +           G +    L  
Sbjct: 541 ERGKNHRYCYNERELQQYISELPPNANYSIQRFKGLGEMMPQQLWE 586



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 10/131 (7%)

Query: 681 SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKITGPCSLLDTIFS---IGRKGIS 735
            + +F  +Y+R   ++  I      +  +    +         L   I           S
Sbjct: 512 LLLTFFYRYQRSIVDQGYIYIACPPLYKVERGKNHRYCYNERELQQYISELPPNA--NYS 569

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEM   QLWETT+NP+TR L +V+I DA++A++LF+ LMGD V PRREFI+ +
Sbjct: 570 IQRFKGLGEMMPQQLWETTMNPETRLLKQVEIEDAAKAEELFTILMGDRVLPRREFIETH 629

Query: 796 S--LP-SALDI 803
              L  + LDI
Sbjct: 630 GPRLKLTDLDI 640


>gi|326486756|gb|ADZ76421.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 588

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 274/559 (49%), Positives = 387/559 (69%), Gaps = 5/559 (0%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T    GLHH+++E++DN+IDE+L GY   I + +  D S TV DNGRGIP  +H++ G
Sbjct: 1   GSTSS-KGLHHLVWEIVDNSIDEALAGYCTDINIQIEKDNSITVVDNGRGIPVGIHEKMG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
             A EVIMT LHAGGKF+   YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  
Sbjct: 60  RPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKR 119

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           G+    L + G   + TGT   F+P  +IF    +++YD L +R+REL+FL   V I++ 
Sbjct: 120 GVPVTDLEIIGETDH-TGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIE 178

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           DKR  + R+    Y+GGI+++V YL+R K+ + + PI I+G +D I++++A+++ND Y  
Sbjct: 179 DKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTS 238

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  FTNNI   +GGTH +G ++ LTR I  Y  K    K++  ++ GDD REG T+++S
Sbjct: 239 NIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIIS 298

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           IK PDP+F  QTK KL +SE R++ ++  +  +  ++ E+P  AK IV K L A+  R A
Sbjct: 299 IKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMA 358

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAIL
Sbjct: 359 AKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAIL 418

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDGA
Sbjct: 419 PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDGA 477

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTFF+R M  +I NG++YI +PPLY + +GK ++Y  +++ LE+ L     + +
Sbjct: 478 HIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQTPK 537

Query: 572 I-ELFCDSKGVISKNDLRN 589
                    G ++   L  
Sbjct: 538 PGLQRYKGLGEMNATQLWE 556



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 412 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 469

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSL 722
               V    +      F +    + I +  +       L  +  G +++          L
Sbjct: 470 TDADVDGAHIRTLLLTFFYRYMRQIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKELEEL 528

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L T+    + G+  QRYKGLGEMNA+QLWETT++P +R+LL+V + DA  AD+ F  LMG
Sbjct: 529 LKTLPQTPKPGL--QRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMG 586

Query: 783 DE 784
           D+
Sbjct: 587 DK 588


>gi|210614352|ref|ZP_03290171.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787]
 gi|210150696|gb|EEA81705.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787]
          Length = 638

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 295/585 (50%), Positives = 396/585 (67%), Gaps = 4/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I V
Sbjct: 2   SAEYGADQIQILEGLEAVRKRPGMYIGSTS-IRGLHHLVYEIVDNAVDEALAGYCDTIFV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N D S TV DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  SINEDNSITVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ I  EG +Y+  +  G +   L V        TGT+VTFLP  +IF   
Sbjct: 121 VVNALSEWLEVEIYNEGKVYKQRYERGKVVYKLKVIDECDAQKTGTKVTFLPDKEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YDTL+ R RE++FL  +++I L D+R  EP E T  Y+GGI+ FV YL++ K PL +
Sbjct: 181 VFDYDTLKQRFREMAFLTKNLKIVLKDERPEEPIEKTFHYEGGIKEFVQYLNKSKTPLYE 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +D +++++AM+ ND Y +N   F NNI   +GGTH+ G R+ALT+    Y  
Sbjct: 241 QIIYCEGEKDGVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNALTKTFNEYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K ++ ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V++ V+  L 
Sbjct: 301 KNKLLKDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNIVSTQLE 360

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK+ V+K + A   R+AAR+ARDLTRRK  L+  SLPGKLADCS++DP   
Sbjct: 361 IFLEQNPNVAKMTVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPANC 420

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+ ++ EI  +ITA GTGI
Sbjct: 421 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 480

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + 
Sbjct: 481 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKEGYVYLAQPPLYKLE 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           + K + Y   +E L   L+                G +    L  
Sbjct: 540 KNKKVWYAYSDEELNKILLEVGRDGNNKIQRYKGLGEMDAEQLWE 584



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G   + DI   R  + +      ++G+ I +    +  R     I+E Y+      +  
Sbjct: 478 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKEGYVYLAQPPLYK 537

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           L  N           L   +  +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 538 LEKNKKVWYAYSDEELNKILLEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRV 597

Query: 766 KITDA--SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + +   S+ D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 598 TMDEESTSELDLTFTTLMGDKVEPRREFIEENAKYVNNLDI 638


>gi|153815427|ref|ZP_01968095.1| hypothetical protein RUMTOR_01662 [Ruminococcus torques ATCC 27756]
 gi|317500889|ref|ZP_07959101.1| DNA gyrase subunit B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089209|ref|ZP_08338111.1| DNA gyrase subunit B [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847286|gb|EDK24204.1| hypothetical protein RUMTOR_01662 [Ruminococcus torques ATCC 27756]
 gi|316897769|gb|EFV19828.1| DNA gyrase subunit B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405761|gb|EGG85290.1| DNA gyrase subunit B [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 645

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 298/590 (50%), Positives = 393/590 (66%), Gaps = 4/590 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S    ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L GY 
Sbjct: 4   SSTEFDAEYGADQIQILEGLEAVRKRPGMYIGSTS-TRGLHHLVYEIVDNSVDEALAGYC 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V +N D S TV DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGLH
Sbjct: 63  DEIQVNINKDNSVTVCDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLH 122

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           GVG SVVNALS WL++ I  +G IY+  +  G +   L V G    + TGT VTF P ++
Sbjct: 123 GVGASVVNALSEWLEVEIYHDGQIYKQRYERGKVVYKLKVVGECEPDRTGTTVTFFPDAE 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+YDTL+ R RE++FL   ++I L D R  E RE T  Y+GGI+ FV+YL++ K
Sbjct: 183 IFDDTVFDYDTLKQRFREMAFLTKGLKIVLRDWRGEELREHTFHYEGGIKEFVTYLNKSK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL +  I  +G +D +++++AM+ ND Y EN   F NNI   +GGTH+ G R ALT+  
Sbjct: 243 TPLYEQIIYCEGMKDGVAVEIAMQHNDSYSENTYGFVNNITTPEGGTHIEGFRGALTKTF 302

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K+   K  + ++ GDD REG T+++S+K+ DP+F  QTK+KL +SE R  V S +
Sbjct: 303 NDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIEDPQFEGQTKQKLGNSEARGAVNSIL 362

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L  +LE++P  AKI V+K + A   R+AAR+ARDLTRRK  L+  SLPGKLADCS++
Sbjct: 363 STQLEIFLEQNPSVAKITVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDK 422

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+ ++ EI  +ITA
Sbjct: 423 DPVNCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITA 482

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PP
Sbjct: 483 FGTGIHED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPP 541

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           LY + + K + Y   +E L   L                 G +  + L  
Sbjct: 542 LYKLEKNKKVWYAYSDEELNQILTEVGRDSNNKIQRYKGLGEMDADQLWE 591



 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G   + DI   R  + +      ++G+ I +    +  R   + I+E Y+      +  
Sbjct: 485 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYK 544

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           L  N           L   +  +GR   + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 545 LEKNKKVWYAYSDEELNQILTEVGRDSNNKIQRYKGLGEMDADQLWETTMDPEHRILLRV 604

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + + +  + D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 605 TMDEETSSELDLTFTTLMGDKVEPRREFIEENAKYVKNLDI 645


>gi|168183732|ref|ZP_02618396.1| DNA gyrase, B subunit [Clostridium botulinum Bf]
 gi|237793326|ref|YP_002860878.1| DNA gyrase subunit B [Clostridium botulinum Ba4 str. 657]
 gi|182673147|gb|EDT85108.1| DNA gyrase, B subunit [Clostridium botulinum Bf]
 gi|229263377|gb|ACQ54410.1| DNA gyrase, B subunit [Clostridium botulinum Ba4 str. 657]
          Length = 637

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 293/588 (49%), Positives = 398/588 (67%), Gaps = 7/588 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
                 YD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+   
Sbjct: 3   QENKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGFCTH 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV D+GRG+P  +H +    A EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 62  IEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS    + ++R+G+I+   +  GI    L + G      GT++ F P  +IF 
Sbjct: 122 GASVVNALSEHCNVEVRRDGHIWLQKYERGIPKTGLDIVGDTE-KHGTKIYFKPDVEIFD 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F YDTL  RLREL+FLN  ++ISL D+R  +  +    Y+GG+ +FV YL+R+K+ L
Sbjct: 181 ELEFEYDTLAQRLRELAFLNKGIKISLTDERYDK--QEMFHYEGGLRSFVLYLNRNKEKL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q PI +  ++D   +++AM++NDGY EN+  F NNI   +GGTHL+G +SALTR I  Y
Sbjct: 239 HQQPIYVDKNKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAINDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K    K   +++ GDD REG T+V+S+K+ DP+F  QTK KL +SEVR +V++ V + 
Sbjct: 299 ARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIVGES 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           + ++LEE+P   KII++K L AS  R+AA+RAR+LTRRK VL+  SLPGKLADCS +DP 
Sbjct: 359 IGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSKDPS 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI  +ITA G 
Sbjct: 419 LCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGA 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG++ F++ K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY 
Sbjct: 479 GIGKE-FNLEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVEEGHVYIAQPPLYR 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           I + K   YV  ++ L++ L+     +           G +    L  
Sbjct: 538 IYKAKKELYVYSDKELDEALLELGGKDTNTNIQRYKGLGEMDPEQLWE 585



 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +        K ++      + ++      V    +    
Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFNLEKIRYNRIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F +    + +    +      +  +     ++ +     L + +  +G K    ++QR
Sbjct: 512 LTFFYRYMKELVEEGHVYIAQPPLYRIYKAKKELYVYSDKELDEALLELGGKDTNTNIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEM+  QLWETT+NP+ R+LL+V I DA  AD++F+ LMG +VEPRR+FI+ N+  
Sbjct: 572 YKGLGEMDPEQLWETTMNPEHRTLLQVTIEDAMAADEIFTILMGTKVEPRRDFIENNADK 631

Query: 798 PSALDI 803
              LDI
Sbjct: 632 VVNLDI 637


>gi|281421058|ref|ZP_06252057.1| DNA gyrase, B subunit [Prevotella copri DSM 18205]
 gi|281404976|gb|EFB35656.1| DNA gyrase, B subunit [Prevotella copri DSM 18205]
          Length = 656

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 269/592 (45%), Positives = 369/592 (62%), Gaps = 19/592 (3%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSC 74
           IQ+L+GL+AV+KRP+MYIGD   E GLHH++ E +DN+IDE++ GY   I VT+N D S 
Sbjct: 16  IQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAGYCTDIEVTINEDNSI 74

Query: 75  TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW 134
           TV DNGRGIP D+H++   SA EV+MT LHAGGKF++ SYKVSGGLHGVGVS VNALS+ 
Sbjct: 75  TVEDNGRGIPVDMHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTH 134

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           +  ++ R G IY+  +  G    P+ V G   N  GT   F P   IF+   + +D + +
Sbjct: 135 MLSQVFRGGKIYQQEYEKGKPLYPVKVVGET-NKRGTRQQFWPDPTIFTHTVYKWDIIAN 193

Query: 195 RLRELSFLNSSVQI---SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           R+REL+FLN+ ++I    L      + +E     K G++ FV Y+DRH+  L    I ++
Sbjct: 194 RMRELAFLNAGIKITLRDLRPDEEGKTKEQVFHAKDGLKEFVRYVDRHRTHLFDDVIYLK 253

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK----S 307
             +  I I++A+ +N  Y EN+  + NNI   +GGTHL+G R ALTR + +Y E     S
Sbjct: 254 TEKQGIPIEIAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRMALTRTLKAYAEADPTIS 313

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              +K K  +  +D REG T+V+SIK+ +P+F  QTK KL +SEV+  V+  VN+ LS +
Sbjct: 314 KQIEKAKVEIAPEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVQGAVQQAVNEALSDY 373

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEEHP EAK I +KV+ A+  R AAR+AR+  +RK  +    LPGKLADCS +DPK+ E+
Sbjct: 374 LEEHPDEAKRICEKVVLAATARIAARKARESVQRKNFMTGGGLPGKLADCSMKDPKECEI 433

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG- 486
           FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+ ++ K+  ++ +  +I ++G   G 
Sbjct: 434 FLVEGDSAGGSAKQGRDRFRQAILPLRGKILNVEKVQWHKVFEAESVMNIIQSIGVRFGV 493

Query: 487 ----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
                   + +KLRY KIIIMTDADVDG+HI TL++T F+R MP +I  G LYI  PPLY
Sbjct: 494 DGEDSKEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEEGHLYIATPPLY 553

Query: 543 GITRGKSLQYVK-----DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             T    +          +  ++ Y                 G ++   L  
Sbjct: 554 KCTYRSKVSEYCYTEQQRQAFIDKYGDGVEDKNIHTQRYKGLGEMNPEQLWE 605



 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 57/71 (80%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K I  QRYKGLGEMN  QLWETT++P TR L +V I +A+QAD++FS LMGD+VEPRREF
Sbjct: 585 KNIHTQRYKGLGEMNPEQLWETTMDPSTRLLKQVTIENAAQADEIFSMLMGDDVEPRREF 644

Query: 792 IQENSLPSALD 802
           I++N+  + +D
Sbjct: 645 IEQNATYANID 655


>gi|269124283|ref|YP_003297653.1| DNA gyrase subunit B [Thermomonospora curvata DSM 43183]
 gi|268309241|gb|ACY95615.1| DNA gyrase, B subunit [Thermomonospora curvata DSM 43183]
          Length = 649

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 278/567 (49%), Positives = 375/567 (66%), Gaps = 16/567 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YDA SI +L+GL+AV+KRP MYIG T GE GLHH++YE++DN++DE+L GYAD I VTL
Sbjct: 2   AYDASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNSVDEALAGYADTIEVTL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V+DNGRGIP D H  E   A EV++T LHAGGKF+ KSY VSGGLHGVG SVV
Sbjct: 61  LADGGVRVADNGRGIPVDEHPVEKRPAIEVVLTTLHAGGKFDGKSYAVSGGLHGVGSSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           NALS+ L   ++++G ++  S+   G    PL   G   ++TGT +TF P  +IF   ++
Sbjct: 121 NALSTRLDAEVRQKGYVWRQSYTWRG-PIAPLAK-GEPTDETGTTITFWPDPEIFETVEW 178

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSP--------EPREITMFYKGGIEAFVSYLDRH 239
           N++TL  RL+E++FLN  + I+L D+R          EPR +   Y+GGI  FV YL+  
Sbjct: 179 NFETLSRRLQEMAFLNRGLSITLTDERPGHLGGEDGTEPRRVVYCYEGGISDFVRYLNAK 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    I  +   + +S+++AM+W+  Y E+V  F N I   +GGTH  G RSALT  
Sbjct: 239 KDAVHPDVISFEEHTEGMSVEVAMQWSGSYTESVHTFANTINTAEGGTHEEGFRSALTSV 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  Y       ++   ++ G+D REG T+++SIK+ +P+F  QTK KL ++E RS V+  
Sbjct: 299 VNRYARDKGLLREKDDNLTGEDVREGLTAIISIKLTNPQFEGQTKTKLGNTEARSFVQKT 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L  W +  P +AK I+ K   A+  R AAR+ARDLTRRK +L+  SLPGKLADC  
Sbjct: 359 VHEHLKDWFDREPGQAKEIINKASQAARARIAARQARDLTRRKSLLESTSLPGKLADCQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP K EL++VEGDSAGGSAK GR+   QAILP+RGKILNVE+AR DK+L + E+  +IT
Sbjct: 419 TDPAKCELYIVEGDSAGGSAKGGRNPHFQAILPIRGKILNVEKARIDKILKNAEVQAIIT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTG+  D FDI+KLRYHKII+M+DAD+DG HI TLLLT  FR M  LI  G +Y+ +P
Sbjct: 479 ALGTGV-HDEFDISKLRYHKIILMSDADIDGHHINTLLLTLLFRFMRPLIEAGHVYLSQP 537

Query: 540 PLYGITRGKSLQ---YVKDEESLEDYL 563
           PLY I   +  Q   Y   +   +  +
Sbjct: 538 PLYKIKWDQRGQDAEYAYSDAERDAII 564



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMNA +LW+TT++P  R LL+V + DA+QAD+LFS LMG++VEPRREFIQ N
Sbjct: 581 VQRFKGLGEMNAQELWDTTMDPSRRVLLQVTLDDAAQADELFSVLMGEDVEPRREFIQRN 640

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 641 AKDVRFLDI 649


>gi|292655722|ref|YP_003535619.1| DNA gyrase subunit B [Haloferax volcanii DS2]
 gi|302425107|sp|D4GZ01|GYRB_HALVD RecName: Full=DNA gyrase subunit B
 gi|291372625|gb|ADE04852.1| DNA gyrase subunit B [Haloferax volcanii DS2]
          Length = 639

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 289/594 (48%), Positives = 387/594 (65%), Gaps = 12/594 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q++ Y A  IQ+L+GL+AV+KRP+MYIG TD   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MS---QDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V L+ DGS +V+DNGRGIP D H++    A EVIMT LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDAIEVALHEDGSVSVTDNGRGIPVDTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGS--AGNDTGTEVTFLP 177
           HGVGVSVVNALSS L++ +KR+G ++   F  G               G DTGT + F P
Sbjct: 117 HGVGVSVVNALSSELEVEVKRDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWP 176

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IF   +F++ TL++RLREL+FLNS V+ISL D+R+ E    T  ++GGI  FV YL+
Sbjct: 177 DDGIFETTEFDFKTLENRLRELAFLNSGVEISLSDERTDESS--TFLFEGGIREFVEYLN 234

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K  L    I      + I +++AM+  D    ++  F NNI  ++GGTHL+G ++ALT
Sbjct: 235 ETKTALHDDVIYYDDESEGIEVEIAMQATDELQGSIHAFANNINTREGGTHLTGFKTALT 294

Query: 298 RQITSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R +  Y             ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR +V
Sbjct: 295 RVVNDYANTHDMLDDLDGDNLRGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIV 354

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES  +  L  + EE+P  A  I+ K ++A+  R AA++A +LTRRK  L+  SLPGKLAD
Sbjct: 355 ESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLAD 414

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  RDP +SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ R D++L + EI  
Sbjct: 415 CQSRDPAESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRA 474

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITA+G G+G D FDI K RY ++I+MTDADVDGAHIRTLLLT  +R M  LI  G++Y 
Sbjct: 475 LITAIGGGVG-DEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYA 533

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRN 589
            +PPLY +    +     DE   +  +  +   +          G ++ + L +
Sbjct: 534 AQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPTQVQRFKGLGEMNPDQLWD 587



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QR+KGLGEMN  QLW+TT+NP+ R L R+ + DA+ AD +F+ LMGD V PR++FI++
Sbjct: 570 QVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRKQFIKD 629

Query: 795 NSLPSA-LDI 803
           ++  +  +DI
Sbjct: 630 HANDAEWVDI 639


>gi|190710549|gb|ACE95105.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
          Length = 627

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/585 (48%), Positives = 404/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNA S+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNAPSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLP 798
           F  LMGD+VEPRR FIQEN+  
Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627


>gi|163848553|ref|YP_001636597.1| DNA gyrase subunit B [Chloroflexus aurantiacus J-10-fl]
 gi|222526487|ref|YP_002570958.1| DNA gyrase subunit B [Chloroflexus sp. Y-400-fl]
 gi|163669842|gb|ABY36208.1| DNA gyrase, B subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222450366|gb|ACM54632.1| DNA gyrase, B subunit [Chloroflexus sp. Y-400-fl]
          Length = 636

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 278/591 (47%), Positives = 395/591 (66%), Gaps = 9/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+      +YD   IQ+L+G++AV+KRP MYIG TD  +GLH M+ EV+DN++DE + G 
Sbjct: 1   MTSETPT-TYDESQIQVLEGMEAVRKRPGMYIGPTD-INGLHTMVREVVDNSVDEVMAGR 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  ++VT++ DGS TVSD+G GIP  +H +EGIS   ++MTRLHAGGKF    YKVS GL
Sbjct: 59  ATSVSVTIHRDGSVTVSDDGSGIPVGIHPKEGISTLTLVMTRLHAGGKFGSGGYKVSSGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALS+++++ + R G  Y   +  G+    ++      +  GT   FLP + 
Sbjct: 119 HGVGVSAVNALSAYMRVDVYRNGRHYYQEYRAGVPVTDVIDL-EPTDRHGTTTRFLPDTS 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           I    D+N+DTL  R RE+S+LN  ++   +D+R+   RE+  +++GGI ++V +L++ K
Sbjct: 178 IIQTLDYNFDTLAQRFREMSYLNKGLRFKFVDERT--NRELNFYFEGGIVSYVRHLNKEK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             L + P  ++   D++ +++A+++ D +  +NV  F NNI   DGG+HLSG R+ALTR 
Sbjct: 236 TVLHRQPFYVERIVDDVMVEVALQYTDSFDTDNVYTFANNINNADGGSHLSGFRTALTRV 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y       K ++ ++ GDD REG T+V+S+K+ DP+FSSQTKEKLVS E  S V + 
Sbjct: 296 INNYARAKGLLKDNESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVATV 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            +D  SAWL+E+P EA+ I++K + A+  R A ++ R+ T RK  ++  SLPGKLADCS+
Sbjct: 356 FSDAFSAWLDENPTEARRIIEKAISAARTRLAVQKVRE-TARKSAMEGFSLPGKLADCSD 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            +P + EL++VEGDSAGG+AKQGR R  QAILPLRGKILNVE++R D+MLS+ E+  LIT
Sbjct: 415 PNPARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GT IG D FD++KLRYH+I +MTDADVDG+HIRTLLLTFFFR M  LI NG L+I +P
Sbjct: 475 AIGTSIG-DQFDLSKLRYHRIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PLY I  G+   Y   +   + YL       ++        G ++   L  
Sbjct: 534 PLYRIKHGREQVYTYSDAERDAYLSKLPPGTKVEIQRYKGLGEMNAEQLWE 584



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +QRYKGLGEMNA QLWETT+NP  R +L+V + DA++AD+ F+ LMGD V PRR FIQ
Sbjct: 566 VEIQRYKGLGEMNAEQLWETTMNPQNRVILQVTLEDAARADETFTMLMGDLVPPRRRFIQ 625

Query: 794 ENSLP-SALDI 803
            ++     LDI
Sbjct: 626 THANEVVELDI 636


>gi|257866280|ref|ZP_05645933.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30]
 gi|257873204|ref|ZP_05652857.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10]
 gi|257800238|gb|EEV29266.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30]
 gi|257807368|gb|EEV36190.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10]
          Length = 649

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 293/650 (45%), Positives = 417/650 (64%), Gaps = 9/650 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  ++      +YDA  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEEEKSLVERAKAYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASSIQVIIEPDNSITVVDDGRGIPVDIQAKTGRPAVETVFTILHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +++ +EG +Y   +  G + + L V     +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF+    FN+D L  R+REL+FLN  ++IS+ DKR  +P      Y GGI+++V 
Sbjct: 179 VPDPEIFTETTVFNFDKLATRVRELAFLNRGLKISIEDKREEKPVLKEYHYDGGIKSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+  K  +   PI ++G +  I+++++M++ D YH N+L F NNI   +GGTH  G ++
Sbjct: 239 HLNASKTVIFPDPIYLEGEQQGITVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  KS   K++  ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR+
Sbjct: 299 ALTRVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRT 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           V +   ++  + +L E+P   + +V+K L AS  R AA+RAR++TRRKG L+I++LPGKL
Sbjct: 359 VTDRLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD+ K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLYG+ +GK++ Y++  ++ E  L N   S         +      ++ +     
Sbjct: 538 YIAQPPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPATPKPTVQRYKGLGEMDDHQLWE 597

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +D   +          IE   I  +   +  +     +        N 
Sbjct: 598 TTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+  QLWETT++P+ R +LRV + DA +AD +F  LMGD VEPRR FI+E
Sbjct: 580 TVQRYKGLGEMDDHQLWETTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 640 NAHYVKNLDI 649


>gi|295108649|emb|CBL22602.1| DNA gyrase subunit B [Ruminococcus obeum A2-162]
          Length = 641

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 297/586 (50%), Positives = 389/586 (66%), Gaps = 4/586 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +N+ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+   I 
Sbjct: 4   ENTEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGFCTEIQ 62

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+N D S TV DNGRGIP  ++ + GI A EV+ T LHAGGKF    YKVSGGLHGVG 
Sbjct: 63  VTINPDNSITVVDNGRGIPVGVNHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGA 122

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSV 184
           SVVNALS WL++ I  EG  Y+  +  G    PL V G      TGT VTFLP  +IF  
Sbjct: 123 SVVNALSEWLEVSIYHEGKEYKQRYERGHTMYPLKVVGDCEEGKTGTTVTFLPDKEIFEE 182

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             ++YD L+ RLRE++FL   ++I L D+R    +E T  Y+GGI  FV+YL+R K+ L 
Sbjct: 183 TVYDYDILKQRLREMAFLTKGLRIVLKDEREDSKKEKTFHYEGGIREFVTYLNRSKESLY 242

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I  +G +D +++++AM+ ND Y EN   F NNI   +GGTH+ G R+ALT+    Y 
Sbjct: 243 PEVIYCEGEKDGVAVEVAMQHNDSYTENSYGFVNNINTPEGGTHIVGFRNALTKTFNDYA 302

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K  + ++ GDD REG T+++S+K+ +P+F  QTK+KL +SE R  V+  V+  L
Sbjct: 303 RKNKLLKDSEPNLSGDDIREGLTAIVSVKIEEPQFEGQTKQKLGNSEARGAVDFVVSRQL 362

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +LE++P  AK  V+K + A   R+AAR+ARDLTRRK  LD  +LPGKLADCS++DPK 
Sbjct: 363 EIFLEQNPTVAKATVEKSVLAQRAREAARKARDLTRRKSALDGMALPGKLADCSDKDPKN 422

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E+++VEGDSAGGSAK  R+R  QAILPLRGKILNVE+AR D++ S+ EI  +ITA GTG
Sbjct: 423 CEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDRIYSNAEIKAMITAFGTG 482

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY +
Sbjct: 483 I-HDDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKV 541

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            + K + Y  D+  L   L                 G +    L  
Sbjct: 542 EKNKKVWYAYDDAELNSILEQIGRDNNNKIQRYKGLGEMDAEQLWE 587



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G  ++ DI   R  + +      ++G+ I +    +  R     I++ Y       L  
Sbjct: 481 TGIHDDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYK 540

Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        L   +  IGR   + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 541 VEKNKKVWYAYDDAELNSILEQIGRDNNNKIQRYKGLGEMDAEQLWETTMDPEKRILLRV 600

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + +++  + D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 601 TMDESATSEIDLTFTTLMGDKVEPRREFIEENARFVENLDI 641


>gi|302384449|ref|YP_003820271.1| DNA gyrase, B subunit [Clostridium saccharolyticum WM1]
 gi|302195077|gb|ADL02648.1| DNA gyrase, B subunit [Clostridium saccharolyticum WM1]
          Length = 637

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 285/585 (48%), Positives = 395/585 (67%), Gaps = 5/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I V
Sbjct: 2   SQEYGADQIQILEGLEAVRKRPGMYIGSTS-TRGLHHLVYEIVDNAVDEALAGYCDSIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++ D S TV D+GRGIP  + K+ GI A EV  T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  IIHPDNSVTVVDDGRGIPVGIQKKAGIPAVEVAFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ I+++G IY+  +  G    PL V G    ++ GT+VTFLP  +IF   
Sbjct: 121 VVNALSQWLEVEIRQDGKIYKQRYEKGKTMYPLKVIGECGPDEHGTKVTFLPDGEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            ++YDTL+ RLRE +FL  +++I L D+R  +   +   Y+GGI+ F++YL++ K PL  
Sbjct: 181 VYDYDTLKIRLRETAFLTKNLKIILRDEREDKHEHV-FHYEGGIKEFITYLNKGKTPLYD 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +G++D + +++AM+ ND Y EN+  F NNI   +GGTHL+G ++ALT  +  Y  
Sbjct: 240 QVFYCEGTKDGVYVEVAMQHNDSYTENIYSFVNNINTPEGGTHLAGFKNALTTTLNDYAR 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K+++ ++ G+D REG T+++S+K+ +P+F  QTK+KL +SE R  V++ + +  +
Sbjct: 300 KNRLLKENETNLSGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDNLLREQFT 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  +K I  K + A   R AAR+ARDLTRRK  L+  +LPGKLADCS+++P+  
Sbjct: 360 YYLEQNPSLSKTICDKSILAQRARAAARKARDLTRRKTALEGMALPGKLADCSDKNPENC 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR DK+ ++ EI  +ITA GTGI
Sbjct: 420 EIYIVEGDSAGGSAKTARSRNTQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FD++KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + 
Sbjct: 480 HED-FDLSKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKVE 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + K + Y   +E L   L                 G +    L  
Sbjct: 539 KNKKVWYAYSDEELNAILKEIGRDNNNKIQRYKGLGEMDAEQLWE 583



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 12/162 (7%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILS 706
             H   + S +   +I   +     ++G+ I +    +  R   + I+E Y       L 
Sbjct: 478 GIHEDFDLSKLRYHKII--IMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLY 535

Query: 707 LICNGDKIKITGPCSLLDTIFSI-GRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
            +    K+        L+ I    GR   + +QRYKGLGEM+A QLWETT++P+ R LLR
Sbjct: 536 KVEKNKKVWYAYSDEELNAILKEIGRDNNNKIQRYKGLGEMDAEQLWETTMDPERRVLLR 595

Query: 765 VKI-TDAS-QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           V +  D + + D  F+ LMGD+VEPRREFI+ N+     LDI
Sbjct: 596 VIMNEDTTSEMDLTFTTLMGDQVEPRREFIEANAKYVQNLDI 637


>gi|325567637|ref|ZP_08144304.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159070|gb|EGC71216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
           casseliflavus ATCC 12755]
          Length = 649

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 293/650 (45%), Positives = 417/650 (64%), Gaps = 9/650 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  ++      +YDA  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEEEKSLVERAKAYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASSIQVIIEPDNSITVVDDGRGIPVDIQAKTGRPAVETVFTILHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +++ +EG +Y   +  G + + L V     +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF+    FN+D L  R+REL+FLN  ++IS+ DKR  +P      Y GGI+++V 
Sbjct: 179 VPDPEIFTETTEFNFDKLATRVRELAFLNRGLKISIEDKREEKPVLKEYHYDGGIKSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+  K  +   PI ++G +  I+++++M++ D YH N+L F NNI   +GGTH  G ++
Sbjct: 239 HLNASKTVIFPDPIYLEGEQQGITVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  KS   K++  ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR+
Sbjct: 299 ALTRVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRT 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           V +   ++  + +L E+P   + +V+K L AS  R AA+RAR++TRRKG L+I++LPGKL
Sbjct: 359 VTDRLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD+ K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLYG+ +GK++ Y++  ++ E  L N   S         +      ++ +     
Sbjct: 538 YIAQPPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPATPKPTVQRYKGLGEMDDHQLWE 597

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +D   +          IE   I  +   +  +     +        N 
Sbjct: 598 TTMDPDNRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+  QLWETT++PD R +LRV + DA +AD +F  LMGD VEPRR FI+E
Sbjct: 580 TVQRYKGLGEMDDHQLWETTMDPDNRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 640 NAHYVKNLDI 649


>gi|257875897|ref|ZP_05655550.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20]
 gi|257810063|gb|EEV38883.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20]
          Length = 649

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 293/650 (45%), Positives = 417/650 (64%), Gaps = 9/650 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  ++      +YDA  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEEEKSLVERAKAYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASSIQVIIEPDNSITVVDDGRGIPVDIQAKTGRPAVETVFTILHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +++ +EG +Y   +  G + + L V     +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF+    FN+D L  R+REL+FLN  ++IS+ DKR  +P      Y GGI+++V 
Sbjct: 179 VPDPEIFTETTVFNFDKLATRVRELAFLNRGLKISIEDKREEKPVLKEYHYDGGIKSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+  K  +   PI ++G +  I+++++M++ D YH N+L F NNI   +GGTH  G ++
Sbjct: 239 HLNASKTVIFPDPIYLEGEQQGITVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  KS   K++  ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR+
Sbjct: 299 ALTRVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRT 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           V +   ++  + +L E+P   + +V+K L AS  R AA+RAR++TRRKG L+I++LPGKL
Sbjct: 359 VTDRLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD+ K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PPLYG+ +GK++ Y++  ++ E  L N   S         +      ++ +     
Sbjct: 538 YIAQPPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPATPKPSVQRYKGLGEMDDHQLWE 597

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +D   +          IE   I  +   +  +     +        N 
Sbjct: 598 TTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QRYKGLGEM+  QLWETT++P+ R +LRV + DA +AD +F  LMGD VEPRR FI+E
Sbjct: 580 SVQRYKGLGEMDDHQLWETTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 640 NAHYVKNLDI 649


>gi|168181121|ref|ZP_02615785.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916]
 gi|226947228|ref|YP_002802319.1| DNA gyrase subunit B [Clostridium botulinum A2 str. Kyoto]
 gi|182668169|gb|EDT80148.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916]
 gi|226844613|gb|ACO87279.1| DNA gyrase, B subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 637

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 298/591 (50%), Positives = 401/591 (67%), Gaps = 8/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS       YD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+
Sbjct: 1   MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV D+GRG+P  +H +    A EVIMT LHAGGKF    YKVSGGL
Sbjct: 59  CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS   ++ ++REG+I++  F  GI    L + G   +  GT++ F P  +
Sbjct: 119 HGVGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F YDTL HRLREL+FLN  ++ISL D+R  +       Y+GG+ +FV YL+R+K
Sbjct: 178 IFDELEFEYDTLAHRLRELAFLNKGIKISLTDERYDKK--EMFHYEGGLRSFVLYLNRNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L Q PI +  ++D   +++AM++NDGY EN+  F NNI   +GGTHL+G +SALTR I
Sbjct: 236 EKLHQQPIYVDENKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRVI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K   +++ GDD REG T+V+S+K+ DP+F  QTK KL + EVR +V++ V
Sbjct: 296 NDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVRGIVDTIV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              + ++LEE+P   KII++K L AS  R+AA+RAR+LTRRK +L+  SLPGKL+DCS +
Sbjct: 356 GQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGKLSDCSSK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI  +ITA
Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG++ FDI+K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  LI  G +YI +PP
Sbjct: 476 FGAGIGKE-FDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           LY I + K   YV  +  L+  L+     +           G ++   L  
Sbjct: 535 LYRIYKAKKEIYVYSDPELDAALLELGGKDTNTNIQRYKGLGEMNPEQLWE 585



 Score =  185 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +        K +       + ++      V    +    
Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F +    + I    +      +  +     +I +     L   +  +G K    ++QR
Sbjct: 512 LTFFYRYMKELIEEGHVYIAQPPLYRIYKAKKEIYVYSDPELDAALLELGGKDTNTNIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEMN  QLWETT++P+ R+LL+V + DA +AD++F+ LMG +VEPRR+FI+ N+  
Sbjct: 572 YKGLGEMNPEQLWETTMDPEHRTLLQVTVEDAMEADEIFTILMGTKVEPRRDFIESNADK 631

Query: 798 PSALDI 803
              LDI
Sbjct: 632 VVNLDI 637


>gi|148378017|ref|YP_001252558.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 3502]
 gi|153931278|ref|YP_001382416.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 19397]
 gi|153936801|ref|YP_001385968.1| DNA gyrase subunit B [Clostridium botulinum A str. Hall]
 gi|148287501|emb|CAL81560.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 3502]
 gi|152927322|gb|ABS32822.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 19397]
 gi|152932715|gb|ABS38214.1| DNA gyrase, B subunit [Clostridium botulinum A str. Hall]
 gi|322804284|emb|CBZ01834.1| DNA gyrase subunit B [Clostridium botulinum H04402 065]
          Length = 637

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 298/591 (50%), Positives = 401/591 (67%), Gaps = 8/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS       YD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+
Sbjct: 1   MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV D+GRG+P  +H +    A EVIMT LHAGGKF    YKVSGGL
Sbjct: 59  CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS   ++ ++REG+I++  F  GI    L + G   +  GT++ F P  +
Sbjct: 119 HGVGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F YDTL HRLREL+FLN  ++ISL D+R  +       Y+GG+ +FV YL+R+K
Sbjct: 178 IFDELEFEYDTLAHRLRELAFLNKGIKISLTDERYDKK--EMFHYEGGLRSFVLYLNRNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L Q PI +  ++D   +++AM++NDGY EN+  F NNI   +GGTHL+G +SALTR I
Sbjct: 236 EKLHQQPIYVDENKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRVI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K   +++ GDD REG T+V+S+K+ DP+F  QTK KL + EVR +V++ V
Sbjct: 296 NDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVRGIVDTIV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              + ++LEE+P   KII++K L AS  R+AA+RAR+LTRRK +L+  SLPGKL+DCS +
Sbjct: 356 GQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGKLSDCSSK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI  +ITA
Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG++ FDI+K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  LI  G +YI +PP
Sbjct: 476 FGAGIGKE-FDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           LY I + K   YV  +  L+  L+     +           G ++   L  
Sbjct: 535 LYRIYKAKKEIYVYSDPELDAALLELGGKDTNTNIQRYKGLGEMNPEQLWE 585



 Score =  185 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +        K +       + ++      V    +    
Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F +    + I    +      +  +     +I +     L   +  +G K    ++QR
Sbjct: 512 LTFFYRYMKELIEEGHVYIAQPPLYRIYKAKKEIYVYSDPELDAALLELGGKDTNTNIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEMN  QLWETT++P+ R+LL+V + DA +AD++F+ LMG +VEPRR+FI+ N+  
Sbjct: 572 YKGLGEMNPEQLWETTMDPEHRTLLQVTVEDAMEADEIFTILMGTKVEPRRDFIESNADK 631

Query: 798 PSALDI 803
              LDI
Sbjct: 632 VVNLDI 637


>gi|167746702|ref|ZP_02418829.1| hypothetical protein ANACAC_01413 [Anaerostipes caccae DSM 14662]
 gi|167653662|gb|EDR97791.1| hypothetical protein ANACAC_01413 [Anaerostipes caccae DSM 14662]
          Length = 637

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/618 (41%), Positives = 372/618 (60%), Gaps = 8/618 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + + +YDA+SI +L+GL+AV+KRP MYIG      GL+H+IYE++DN++DE L G+ D I
Sbjct: 1   MSSQNYDANSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNSVDEFLAGHCDEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVTL  DG+  + DNGRGIP  ++++ G+SA E++ T LHAGGKF    YK+SGGLHGVG
Sbjct: 60  TVTLKDDGTAVIEDNGRGIPVGINEQTGLSAVEMVFTMLHAGGKFGDGGYKISGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
            SVVNALS+WLK+ +K++GNIYE  F  G +  PL VTGS   ++TGT+V FLP  +IF 
Sbjct: 120 ASVVNALSTWLKVTVKQDGNIYEECFERGKVTEPLRVTGSCRKSETGTKVRFLPDPEIFD 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F    +++RL E ++LN  ++I  I++RS E  E+      GI A+V  L+  K  L
Sbjct: 180 KTYFKAAMIRNRLHETTYLNPELKIHYINERSGEETEVLYHEPEGICAYVKKLNDGKHVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              P+  +   + I  ++A ++ + + EN+L F NNI   +GGTH++G +S  T  +  Y
Sbjct: 240 H-DPVYYKRDINGIEAEIAFQYTEDFGENILGFCNNIYTTEGGTHITGFKSKFTAVMNQY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             +    K+   +  G D R G T+++S+K P+PRF  QTK KL + +   VV     D 
Sbjct: 299 ARELGILKEKDTNFTGADVRNGMTAIISVKHPEPRFEGQTKTKLDNPDANKVVSEITGDE 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
              + +++    K ++     ++ +R A  +A+     +  L I S  GKL++C  R P+
Sbjct: 359 TVLFFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNLLVRQKLSIDS-NGKLSNCESRKPE 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I   G 
Sbjct: 418 ECEIFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKATMDKVLANAEIKTMINTFGC 477

Query: 484 GIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           G  +   + FDI KLRY KI+IMTDADVDGAHI TLLLTFF+R MP LI +G +Y+  PP
Sbjct: 478 GFSEGYGNDFDIEKLRYQKIVIMTDADVDGAHIATLLLTFFYRFMPELITHGHVYLATPP 537

Query: 541 LYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY  I +     Y+ D+ +LE Y         ++ +     + +       +D   +  K
Sbjct: 538 LYKAIPKKGKETYLFDDTALEKYKAAHKGPFTLQRYKGLGEMDASQLWETTLDPETRTLK 597

Query: 600 LIKDFYPNHDKTFIEQAV 617
            I+              +
Sbjct: 598 QIEIEDARMASDVTSMLM 615



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 15/269 (5%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +   ++  + E++  + L+ Q LS +      +       +   FI +        K
Sbjct: 376 CAEKSAKIRKAE-EKAKTNLLVRQKLSIDSNGKLSNCESRKPEECEIFIVEGDSAGGSAK 434

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +  +   +   + N E      V   +++   +N       + +    +   +
Sbjct: 435 TARNRRTQAIL--PIRGKILNVEKATMDKVLANAEIKTMINTFGCGFSEGYGNDFDIEKL 492

Query: 663 LVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSLI---CNGDKIK 715
             ++I   +     ++G+ I +    F  ++             T          G +  
Sbjct: 493 RYQKIV--IMTDADVDGAHIATLLLTFFYRFMPELITHGHVYLATPPLYKAIPKKGKETY 550

Query: 716 ITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +    +L         KG  ++QRYKGLGEM+ASQLWETTL+P+TR+L +++I DA  A 
Sbjct: 551 LFDDTALEKY--KAAHKGPFTLQRYKGLGEMDASQLWETTLDPETRTLKQIEIEDARMAS 608

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D+ S LMG EV PRR+FI +N+  + LDI
Sbjct: 609 DVTSMLMGSEVPPRRQFIYDNAEDAMLDI 637


>gi|219850524|ref|YP_002464957.1| DNA gyrase subunit B [Chloroflexus aggregans DSM 9485]
 gi|219544783|gb|ACL26521.1| DNA gyrase, B subunit [Chloroflexus aggregans DSM 9485]
          Length = 636

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 279/591 (47%), Positives = 395/591 (66%), Gaps = 9/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +YD   IQ+L+G++AV+KRP MYIG TD  +GLH M+ EV+DN++DE + G 
Sbjct: 1   MTNETPT-TYDESQIQVLEGMEAVRKRPGMYIGPTD-INGLHTMVREVVDNSVDEVMAGR 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  ++VT++ DGS TVSD+G GIP  +H +EGIS   ++MTRLHAGGKF    YKVS GL
Sbjct: 59  ATSVSVTIHRDGSVTVSDDGSGIPVGIHPKEGISTLTLVMTRLHAGGKFGSGGYKVSSGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVS VNALSS++++ + R G  Y   +  G+    ++      +  GT   FLP + 
Sbjct: 119 HGVGVSAVNALSSYMRVDVYRNGRHYYQEYRAGVPVTDVIDL-EPTDRHGTTTRFLPDTS 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           I    D+N+DTL  R RE+S+LN  ++   +D+R+   RE+  +++GGI ++V +L++ K
Sbjct: 178 IIQTLDYNFDTLAQRFREMSYLNKGLRFKFVDERT--NRELNFYFEGGIVSYVRHLNKDK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             L + P  ++   D + +++A+++ D +  +NV  F NNI   DGG+HLSG R+ALTR 
Sbjct: 236 VVLHRQPFYVERVVDEVMVEVALQYTDTFDTDNVYTFANNINNSDGGSHLSGFRTALTRV 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY       K+++ ++ GDD REG T+V+S+K+ DP+FSSQTKEKLVS E  S V + 
Sbjct: 296 INSYARAKGLLKENESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVATV 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             D  SAWL+E+P +A+ I++K + A+  R A ++ R+ T RK  ++  SLPGKLADCS+
Sbjct: 356 FGDAFSAWLDENPADARRIIEKAITAARTRLAVQKVRE-TARKSAMEGFSLPGKLADCSD 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            +P + EL++VEGDSAGG+AKQGR R  QAILPLRGKILNVE++R D+MLS+ E+  LIT
Sbjct: 415 PNPARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GT IG D FD++KLRYH+I +MTDADVDG+HIRTLLLTFFFR M  LI NG L+I +P
Sbjct: 475 AIGTSIG-DQFDLSKLRYHRIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PLY I  G+   Y   +   + YL       ++        G ++   L  
Sbjct: 534 PLYRIKHGREQVYTYSDAERDAYLSKLPPGTKVEIQRYKGLGEMNAEQLWE 584



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +QRYKGLGEMNA QLWETT+NP  R +L+V + DA++AD+ F+ LMGD V PRR FIQ
Sbjct: 566 VEIQRYKGLGEMNAEQLWETTMNPQNRVILQVTLEDAARADETFTMLMGDLVPPRRRFIQ 625

Query: 794 ENSLP-SALDI 803
            ++     LDI
Sbjct: 626 THANEVVELDI 636


>gi|309791890|ref|ZP_07686373.1| DNA gyrase, B subunit [Oscillochloris trichoides DG6]
 gi|308226062|gb|EFO79807.1| DNA gyrase, B subunit [Oscillochloris trichoides DG6]
          Length = 636

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 278/592 (46%), Positives = 387/592 (65%), Gaps = 11/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +  SYDA  I +L+GLDAV+KRP MYIG TD  +GLHHMI EV+DN++DE+L GY
Sbjct: 1   MT--TEPQSYDASQITVLEGLDAVRKRPGMYIGPTD-INGLHHMIKEVVDNSVDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD IT+T+  DGS  V+DNGRGIP D+H +  +SA ++  T LHAGGKF    YKVS GL
Sbjct: 58  ADTITITIFADGSVQVTDNGRGIPVDIHPKHQVSALQLAATELHAGGKFGDGGYKVSSGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS W++  ++R   ++   +  G    P+V  G A   TGT + F+P   
Sbjct: 118 HGVGLSVVNALSEWMRAEVRRHDKLWLQEYRTGKPQGPVVAVGEAE-GTGTSIHFMPDVT 176

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF    D+ +  +  RLRE+++L   ++     +      E++ +++GGI ++V +L++ 
Sbjct: 177 IFKDGIDYQFRVVAQRLREMAYLTKGLR--FKFEDQRTQNEVSFYFEGGIISYVRHLNKA 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           K  L + P  ++ +   +++++AM++ D Y  +++  F NNI   DGG HLSG R+ALTR
Sbjct: 235 KGALHRLPFYVERTVGEVAVEVAMQYTDTYDTDSIYAFANNINNTDGGAHLSGFRTALTR 294

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y       K++  ++ GDD REG T+V+S+K+ DP+FSSQTKEKLVS E  S V +
Sbjct: 295 VINTYARNKNLLKENDANLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVGT 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D    WL+E+P EA+ I++K + A+  R A ++ RD T RK  +D  SLPGKLADCS
Sbjct: 355 VMGDAFGTWLDENPTEARRIIEKAVSAARTRLAVQKVRD-TARKSAMDGFSLPGKLADCS 413

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           + +P +SEL++VEGDSAGG+AKQGR R  QAILPLRGKILNVE++R DKMLS+ E+  LI
Sbjct: 414 DSNPARSELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRIDKMLSNAEVKALI 473

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+G  IG+  F   KLRYH+II+M DADVDG+HIRTLLLTFFFR M  LI +G LYI +
Sbjct: 474 TAIGASIGE-LFSTEKLRYHRIILMADADVDGSHIRTLLLTFFFRHMRQLITSGHLYIAQ 532

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRN 589
           PPLY I  G+   Y   +   + YL      ++         G ++   L  
Sbjct: 533 PPLYRIKHGREQVYTYSDAERDSYLAKLPAGTKADIQRYKGLGEMNAEQLWE 584



 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETTLNP  R +L+V + DA QAD+ F+ LMGD V PRR FIQ +
Sbjct: 568 IQRYKGLGEMNAEQLWETTLNPANRIILQVTLEDAQQADETFTMLMGDLVPPRRRFIQTH 627

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 628 ASEVRDLDI 636


>gi|290889525|ref|ZP_06552615.1| hypothetical protein AWRIB429_0005 [Oenococcus oeni AWRIB429]
 gi|290480723|gb|EFD89357.1| hypothetical protein AWRIB429_0005 [Oenococcus oeni AWRIB429]
          Length = 652

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 285/639 (44%), Positives = 400/639 (62%), Gaps = 9/639 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+SY   SIQIL+GL+AV+KRP MYIG T   SGLHH+++E++DN IDE+L G+A  +T+
Sbjct: 15  NNSYGGSSIQILEGLEAVRKRPGMYIGST-ASSGLHHLVWEIIDNGIDEALAGFAHHVTL 73

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  D S T++D+GRG+P ++  + G  A E + T LHAGGKF+ KSYKVSGGLHGVG S
Sbjct: 74  TIEKDNSITITDDGRGVPVEIQPKTGRPAMEAVFTILHAGGKFDSKSYKVSGGLHGVGAS 133

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +R+ R+  IY M F  G +   + +         GT V F P  DIF   
Sbjct: 134 VVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDIFRET 193

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y TL  R+REL+FLN  +++S+ DKR    +  +  Y+GGI  +V +L+++K+PL 
Sbjct: 194 IVFDYRTLASRIRELAFLNKGLRLSITDKRVDPVKNESFMYEGGIAEYVKFLNKNKQPLF 253

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             P+ ++G  + I +++A+++ D   E ++ F NNI   +GGTH +G + ALTR I  Y 
Sbjct: 254 PEPVYVEGEENGIQVEVALQYTDAVAETLMSFANNIHTHEGGTHETGFKMALTRIINDYA 313

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +K    K     + G+D REG T+++SIK PDP+F  QTK KL +++ + VV    +   
Sbjct: 314 KKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDAQQVVNHQFSTIF 373

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + ++ E+P  A+ I  K L AS  R AA++ARDLTR+K  L+I++L GKLAD + RDP+ 
Sbjct: 374 NRFMMENPETARAIANKGLIASKARAAAKKARDLTRKKSGLEISALAGKLADNTSRDPEI 433

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG
Sbjct: 434 SELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANEEIRSLFTAMGTG 493

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG- 543
            G++ FDI+K  YHK+IIMTDADVDGAHIRTLLLT FFR M  LI  G++YI +PPLYG 
Sbjct: 494 FGEE-FDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYIYIAQPPLYGV 552

Query: 544 -ITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I       Y+  +E L+ Y      S +         G +    L +   D     + +
Sbjct: 553 AIGNSDQRVYLDSDEELDQYTATLPASPKPRIQRYKGLGEMDAVQLWDTTMDPKH--RRL 610

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
               P +         +      E  +E     A  + +
Sbjct: 611 LRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVED 649



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLW+TT++P  R LLRV      + D  F  LMGD VEPRREFI++N
Sbjct: 584 IQRYKGLGEMDAVQLWDTTMDPKHRRLLRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDN 643

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 644 AQFVEDLDV 652


>gi|224086827|ref|XP_002307976.1| predicted protein [Populus trichocarpa]
 gi|222853952|gb|EEE91499.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 270/597 (45%), Positives = 378/597 (63%), Gaps = 12/597 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  + +Y +D IQ+LKGL+ V+KRP MYIG T G  GLHH++YE+LDNA+DE+  GYA 
Sbjct: 5   ESASSKAYGSDQIQVLKGLEPVRKRPGMYIGST-GPRGLHHLVYEILDNAVDEAQAGYAS 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120
            I V L+ D S +++DNGRGIPTDLH+    SA E ++T LHAGGKF      Y VSGGL
Sbjct: 64  KINVVLHSDNSISITDNGRGIPTDLHQVTKKSALETVLTVLHAGGKFGGSNSGYSVSGGL 123

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ + R+G  Y+  +  G     L    ++  + +  GT + F P
Sbjct: 124 HGVGLSVVNALSEELEVTVWRDGKEYQQKYSRGNPVTTLMCYELSAESKDQKGTRIRFWP 183

Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFVS 234
             ++F+    F+Y+T+  R+REL+FLN  + ISL  + +   + +    FY GG+  +V+
Sbjct: 184 DKEVFTTEIQFDYNTVGGRVRELAFLNPKLAISLKKEDNDPEKNQYDEHFYAGGLIEYVN 243

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+  KK L    +  +   D I+ID+A++W  D Y + +L + N+I   DGGTH+ G++
Sbjct: 244 WLNTDKKSLH-DVVSFRKEVDGIAIDMALQWCSDAYSDTILGYANSIRTVDGGTHIDGVK 302

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR + ++ +KS   K    S+ G+  REG T ++S+K+P P F  QTK +L + EVR
Sbjct: 303 ASLTRTLNNFGKKSKVIKDKDISLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVR 362

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            VVE  V + L+ +LE HP     I+ K L+A     AA+RAR+L R+K VL  +SLPGK
Sbjct: 363 KVVEQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGK 422

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  DP++SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER   + M  ++E
Sbjct: 423 LADCSSTDPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEEAMYKNEE 482

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  LI ALG G+  + F  + LRYH+III+TDADVDGAHIRTLLLTFFFR   +L   G 
Sbjct: 483 IQNLILALGLGVKGEDFKKDALRYHRIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGC 542

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +Y+  PPLY + RGK + Y  D+  L     +   +           G +    L  
Sbjct: 543 IYVGVPPLYKVERGKQVYYCFDDAELRKVQSSFPQNASYNMQRFKGLGEMMPAQLWE 599



 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 124/341 (36%), Gaps = 45/341 (13%)

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556
           K+I   D  + G H+R  L      ++PS    G        P +  +      +Y+ + 
Sbjct: 317 KVIKDKDISLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVEQSVQEYLTEY 376

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKT 611
             L   +++  LS+ +     +       +L  +  +  +  +   + D     P   + 
Sbjct: 377 LELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTDPEESEI 436

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV------- 664
           FI +   +G    +       ++       LN      E  +      + IL        
Sbjct: 437 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEEAMYKNEEIQNLILALGLGVKG 496

Query: 665 ----KRIARGVQEQFVLEGS--------SIFSFGSKYKRIFSNR--IEENYLTILSLICN 710
               K   R  +   + +           + +F  +Y+R   +   I      +  +   
Sbjct: 497 EDFKKDALRYHRIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERG 556

Query: 711 GDKIKITGPCSLLDTIFSIGRK---------GISMQRYKGLGEMNASQLWETTLNPDTRS 761
                      L        RK           +MQR+KGLGEM  +QLWETT++P+ R 
Sbjct: 557 KQVYYCFDDAEL--------RKVQSSFPQNASYNMQRFKGLGEMMPAQLWETTMDPEQRL 608

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           L ++ + DA++A  +FS LMG  V+ R+E IQ+ +    +D
Sbjct: 609 LKQLVVEDAAEASVVFSSLMGTRVDGRKELIQKAARMINVD 649


>gi|145577969|gb|ABP82703.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           mycoides]
          Length = 632

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 286/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGETDH-TGTITRFKPDPEIFKETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++ + DKR  + ++    Y+GGI+++V +L+R K P+ +
Sbjct: 179 EYDFDTLATRMRELAFLNRNIKLIIEDKRENKQKKE-FHYEGGIKSYVEHLNRSKAPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPSIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+II+TDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIITDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAHPKPGIQRYKGLGEMNPTQLWE 581



 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 6/199 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++   +  I       +         ++  
Sbjct: 437 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIII 494

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    I       L  +  G KI+       L+ I
Sbjct: 495 TDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKI 553

Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +         +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+
Sbjct: 554 LAELPAHPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613

Query: 785 VEPRREFIQENSLPS-ALD 802
           VEPRR FIQEN+     LD
Sbjct: 614 VEPRRNFIQENAKYVKNLD 632


>gi|170756292|ref|YP_001779632.1| DNA gyrase subunit B [Clostridium botulinum B1 str. Okra]
 gi|169121504|gb|ACA45340.1| DNA gyrase, B subunit [Clostridium botulinum B1 str. Okra]
          Length = 637

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 298/591 (50%), Positives = 401/591 (67%), Gaps = 8/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS       YD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+
Sbjct: 1   MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV D+GRG+P  +H +    A EVIMT LHAGGKF    YKVSGGL
Sbjct: 59  CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS   ++ ++REG+I++  F  GI    L + G   +  GT++ F P  +
Sbjct: 119 HGVGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F YDTL HRLREL+FLN  ++ISL D+R  +       Y+GG+ +FV YL+R+K
Sbjct: 178 IFDELEFEYDTLAHRLRELAFLNKGIKISLTDERYDKK--EMFHYEGGLRSFVLYLNRNK 235

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L Q PI +  ++D   +++AM++NDGY EN+  F NNI   +GGTHL+G +SALTR I
Sbjct: 236 EKLHQQPIYVDENKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRVI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K    K   +++ GDD REG T+V+S+K+ DP+F  QTK KL + EVR +V++ V
Sbjct: 296 NDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVRGIVDTIV 355

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              + ++LEE+P   KII++K L AS  R+AA+RAR+LTRRK +L+  SLPGKL+DCS +
Sbjct: 356 GQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGKLSDCSSK 415

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI  +ITA
Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG++ FDI+K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  LI  G +YI +PP
Sbjct: 476 FGAGIGKE-FDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPP 534

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           LY I + K   YV  +  L+  L+     +           G ++   L  
Sbjct: 535 LYRIYKAKKETYVYSDPELDAALLELGGKDTNTNIQRYKGLGEMNPEQLWE 585



 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +        K +       + ++      V    +    
Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F +    + I    +      +  +     +  +     L   +  +G K    ++QR
Sbjct: 512 LTFFYRYMKELIEEGHVYIAQPPLYRIYKAKKETYVYSDPELDAALLELGGKDTNTNIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797
           YKGLGEMN  QLWETT++P+ R+LL+V + DA +AD++F+ LMG +VEPRR+FI+ N+  
Sbjct: 572 YKGLGEMNPEQLWETTMDPEHRTLLQVTVEDAMEADEIFTILMGTKVEPRRDFIESNADK 631

Query: 798 PSALDI 803
              LDI
Sbjct: 632 VVNLDI 637


>gi|190710561|gb|ACE95111.1| gyrase subunit B [Bacillus thuringiensis serovar novosibirsk]
          Length = 627

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 281/585 (48%), Positives = 401/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+D+GRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+G I+   +  G+    L V G   + TGT   F P S+IF+   
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D F I K RYHK+IIMTDADVDGAHIRTLLL FF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLMFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  + + LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 5/194 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++   +  I       +         ++  
Sbjct: 437 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIM 494

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +     +F +    + I    I       L  +  G KI+       L+ I
Sbjct: 495 TDADVDGAHIRTLLLMFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKI 553

Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+
Sbjct: 554 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613

Query: 785 VEPRREFIQENSLP 798
           VEPRR FIQEN+  
Sbjct: 614 VEPRRNFIQENAKY 627


>gi|219684407|ref|ZP_03539351.1| DNA gyrase, B subunit [Borrelia garinii PBr]
 gi|219672396|gb|EED29449.1| DNA gyrase, B subunit [Borrelia garinii PBr]
          Length = 634

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 283/639 (44%), Positives = 419/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVVDNSIDEALAGFCDKIDVII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+G I+  +F  GI  + + V G +    GT+VTFL  S+IF   D+N
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESSIM-GTKVTFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + I++ DKR+ + +    +++GGI++FV YL +  K       
Sbjct: 180 FDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSKFYFEGGIKSFVDYLTKDSKAFQSESY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE++ +VE  V + L   +
Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYEHLLEII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE  II++K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 NSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCASKNPSEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHK+IIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY +    
Sbjct: 480 -FDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKMKYDN 538

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  DE+  E +L +        +F       G ++   L         +D   +   
Sbjct: 539 RIYYFYDEKEKEKFLDSIESKNRNNIFLQRYKGLGEMNPTQLWET-----TMDPSRRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    IE   I      +  +     +     N +N 
Sbjct: 594 LINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F      I +  I      +  +  +               LD+I S  R  I +Q
Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKMKYDNRIYYFYDEKEKEKFLDSIESKNRNNIFLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMDPSRRKMRLINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627

Query: 798 PS-ALDI 803
               LD+
Sbjct: 628 NVINLDV 634


>gi|28412562|gb|AAO39047.1| coumermycin-resistant GyrB [synthetic construct]
          Length = 634

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 284/639 (44%), Positives = 416/639 (65%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKF++ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFDKDTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ +  +G I+  +F  GI  + + V G +   TGT+VTFL  S+IF   D+N
Sbjct: 121 NALSSFLEVYVNIDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + IS+ DKR  + +    +++GGI++FV YL    K     P 
Sbjct: 180 FDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE+R +VE  V + L   +
Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE   I+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538

Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  +E+  E +L +    + +          G ++   L         +D   +   
Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    IE   I      +  +     +     N +N 
Sbjct: 594 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K++  +      ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F      I +  I      +  +  +               LD+I +  R  IS+Q
Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LMGD VEPR+EFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627

Query: 798 PS-ALDI 803
               LD+
Sbjct: 628 NVINLDV 634


>gi|255562314|ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis]
 gi|223538602|gb|EEF40205.1| DNA gyrase subunit B, putative [Ricinus communis]
          Length = 732

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 271/599 (45%), Positives = 372/599 (62%), Gaps = 16/599 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  + +Y +D IQ+LKGL+ V+KRP MYIG T G  GLHH++YE+LDNAIDE+  GYA 
Sbjct: 84  ESASSKAYGSDQIQVLKGLEPVRKRPGMYIGST-GPRGLHHLVYEILDNAIDEAQAGYAS 142

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120
            + V L+ D S ++SDNGRGIPTDLH     SA E ++T LHAGGKF      Y VSGGL
Sbjct: 143 RVDVILHSDNSVSISDNGRGIPTDLHPVTKKSALETVLTVLHAGGKFGGSNSGYSVSGGL 202

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN-----PLVVTGSAGNDTGTEVTF 175
           HGVG+SVVNALS  L++ + R+G  Y   +  G          L V   + +  GT V F
Sbjct: 203 HGVGLSVVNALSEGLEVTVWRDGMEYRQRYSRGNPVTILMCHSLAV--ESRDRQGTCVRF 260

Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAF 232
            P  ++F+   +F+Y+T+  R+REL+FLN  + I+L  + +   + +    FY GG+  +
Sbjct: 261 WPDKEVFTTAIEFDYNTIAGRVRELAFLNPKLTITLKKEDNDPEKNQYDEYFYAGGLIEY 320

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+  KKPL       +   D I+ID+A++W  D Y + +L + N+I   DGGTH+ G
Sbjct: 321 VKWLNTDKKPLHDVVGFGK-EIDGITIDMALQWCSDAYSDTILGYANSIRTIDGGTHIDG 379

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +++LTR + S  +KS   K+   ++ G+  REG T ++S+K+P P F  QTK +L + E
Sbjct: 380 FKASLTRTLNSLGKKSKIIKEKDINLSGEHVREGLTCIVSVKVPSPEFEGQTKTRLGNPE 439

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR VV+  V + L+ +LE HP     I+ K L+A     AA++AR+L R+K VL  +SLP
Sbjct: 440 VRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKKARELVRQKSVLRTSSLP 499

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS  +P++SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  +
Sbjct: 500 GKLADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKN 559

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +EI  LI  LG G+  + F    LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L   
Sbjct: 560 EEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQKALFEE 619

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           G +Y+  PPLY + RGK + Y  DE  L+    +   +           G +    L  
Sbjct: 620 GCIYVGVPPLYKVERGKQVYYCYDEAELKKLRSSFPQNASYNIQRFKGLGEMMPLQLWE 678



 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 121/341 (35%), Gaps = 45/341 (13%)

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556
           KII   D ++ G H+R  L      ++PS    G        P +  +      +Y+ + 
Sbjct: 396 KIIKEKDINLSGEHVREGLTCIVSVKVPSPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 455

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK-----DFYPNHDKT 611
             L   +++  LS+ +     +       +L              K        P   + 
Sbjct: 456 LELHPDVLDSILSKSLNALKAALAAKKARELVRQKSVLRTSSLPGKLADCSSTNPEESEI 515

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL-------- 663
           FI +   +G    +       ++       LN   +     +      + IL        
Sbjct: 516 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKG 575

Query: 664 --VKRIARGVQEQFVLEGS---------SIFSFGSKYKRIFSNR--IEENYLTILSLICN 710
              K+ A    +  +L  +          + +F  +Y++       I      +  +   
Sbjct: 576 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQKALFEEGCIYVGVPPLYKVERG 635

Query: 711 GDKIKITGPCSLLDTIFSIGRK---------GISMQRYKGLGEMNASQLWETTLNPDTRS 761
                      L        +K           ++QR+KGLGEM   QLWETT++P+ R 
Sbjct: 636 KQVYYCYDEAEL--------KKLRSSFPQNASYNIQRFKGLGEMMPLQLWETTMDPEQRL 687

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           L ++ + DA++A+ +FS LMG  V+ R+E IQ ++    +D
Sbjct: 688 LKQLVVEDAAEANVVFSSLMGARVDVRKELIQSSARAVNID 728


>gi|145577963|gb|ABP82700.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar finitimus]
          Length = 632

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 288/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP M IG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMCIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 158/466 (33%), Gaps = 47/466 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  I  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENARYVKNLD 632


>gi|12044853|ref|NP_072663.1| DNA gyrase subunit B [Mycoplasma genitalium G37]
 gi|255660024|ref|ZP_05405433.1| DNA gyrase subunit B [Mycoplasma genitalium G37]
 gi|1346242|sp|P47249|GYRB_MYCGE RecName: Full=DNA gyrase subunit B
 gi|497647|gb|AAA57071.1| DNA gyrase subunit B [Mycoplasma genitalium]
 gi|1045671|gb|AAC71219.1| DNA gyrase, B subunit [Mycoplasma genitalium G37]
 gi|166078727|gb|ABY79345.1| DNA gyrase, B subunit [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 650

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 258/601 (42%), Positives = 375/601 (62%), Gaps = 15/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +N + + YD+ SI++L+GL+AV+KRP MYIG T GE GLHHMI+E++DN+IDE++ G+
Sbjct: 1   MEENNKANIYDSSSIKVLEGLEAVRKRPGMYIGST-GEEGLHHMIWEIVDNSIDEAMGGF 59

Query: 61  ADIITVTLNMDGSCT-VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           A  + +TL  D   T V D+GRGIP D+H +   S  E + T LHAGGKF+  SYKVSGG
Sbjct: 60  ASFVKLTL-EDNFVTRVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSS  K+ + R+   Y +SF + G +   LV  G++  + GT V F+P 
Sbjct: 119 LHGVGASVVNALSSSFKVWVFRQNKKYFLSFSDGGKVIGDLVQEGNSEKEHGTIVEFVPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             +    D+    +  RL++L+FLN  ++I  +D R   P+  +  Y GG+  ++ +L+ 
Sbjct: 179 FSVMEKSDYKQTVIVSRLQQLAFLNKGIRIDFVDNRKQNPQSFSWKYDGGLVEYIHHLNN 238

Query: 239 HKKPLMQSPIRIQ----------GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            K+PL    I  +               + +++A ++N  Y++++  F NNI   +GGTH
Sbjct: 239 EKEPLFNEVIADEKTETVKAVNRDENYTVKVEVAFQYNKTYNQSIFSFCNNINTTEGGTH 298

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + G R+AL + I  +  ++   K     +  DD  EG T+++SIK P+P++  QTK+KL 
Sbjct: 299 VEGFRNALVKIINRFAVENKFLKDSDEKINRDDVCEGLTAIISIKHPNPQYEGQTKKKLG 358

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V S V++    ++ E+P EA  I++K L A   R  ++ AR+LTRRK   D  
Sbjct: 359 NTEVRPLVNSVVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSG 418

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC+ RDP  SEL++VEGDSAGG+AK GR R  QAILPLRGKILNVE++ F+++
Sbjct: 419 SLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSNFEQI 478

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++ EI  L+ A+G GI +  F++ KLRY KI+IMTDADVDGAHIRTLLLTFFFR M  L
Sbjct: 479 FNNAEISALVMAIGCGI-KPDFELEKLRYSKIVIMTDADVDGAHIRTLLLTFFFRFMYPL 537

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           +  G ++I +PPLY ++      Y+  +  LE +       +         G +    L 
Sbjct: 538 VEQGNIFIAQPPLYKVSYSHKDLYMHTDVQLEQWKSQNPNVKFGLQRYKGLGEMDALQLW 597

Query: 589 N 589
            
Sbjct: 598 E 598



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P  R+LL+V + DAS AD  FS LMGDEV PRREFI++N
Sbjct: 582 LQRYKGLGEMDALQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEKN 641

Query: 796 SLPS-ALDI 803
           +     +DI
Sbjct: 642 ARSVKNIDI 650


>gi|226326150|ref|ZP_03801668.1| hypothetical protein COPCOM_03969 [Coprococcus comes ATCC 27758]
 gi|225205692|gb|EEG88046.1| hypothetical protein COPCOM_03969 [Coprococcus comes ATCC 27758]
          Length = 648

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 296/587 (50%), Positives = 391/587 (66%), Gaps = 4/587 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L GY D I
Sbjct: 10  NMSAEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSVDEALAGYCDHI 68

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +N D S TV DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGLHGVG
Sbjct: 69  QVFINPDNSITVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVG 128

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
            SVVNALS WL++ I  EG +Y   +  G +   L V        TGT+VTFLP   IF 
Sbjct: 129 ASVVNALSDWLEVEICHEGKVYRQRYEKGHVVYKLKVVDECDPEKTGTKVTFLPDETIFE 188

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+YDTL+ R RE++FL   ++ISL D R  EP+E    Y+GGI+ FV YL+R K PL
Sbjct: 189 DTVFDYDTLKQRFREMAFLTKGLRISLTDLRDEEPKERVFHYEGGIKEFVQYLNRSKTPL 248

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            +  I  +G++DN+ +++AM+ ND Y +N   F NNI   +GGTH+ G R+A+T+    Y
Sbjct: 249 YEQIIYCEGTKDNVEVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRNAITKTFNDY 308

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K  + ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V+S V+  
Sbjct: 309 ARKNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDSIVSSQ 368

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +LE++P   K IV+K + A   R+AAR+ARDLTRRK  L+  SLPGKLADCS++DP 
Sbjct: 369 LQIFLEQNPAIGKSIVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPS 428

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+  + EI  +ITA GT
Sbjct: 429 KCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGT 488

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY 
Sbjct: 489 GI-HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYK 547

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + K + Y   +E L   +      +          G +    L +
Sbjct: 548 LEKNKKVWYAYSDEELAKIISEVGRDQNNKIQRYKGLGEMDAEQLWD 594



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G  ++ DI   R  + +      ++G+ I +    +  R     I++ Y       L  
Sbjct: 488 TGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYK 547

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        L  I S   +  +  +QRYKGLGEM+A QLW+TT++P  R L RV
Sbjct: 548 LEKNKKVWYAYSDEELAKIISEVGRDQNNKIQRYKGLGEMDAEQLWDTTMDPQHRILRRV 607

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + D +  + D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 608 TMDDETSSELDLTFTTLMGDKVEPRREFIEENAKFVKNLDI 648


>gi|47458936|ref|YP_015798.1| DNA gyrase subunit b [Mycoplasma mobile 163K]
 gi|47458264|gb|AAT27587.1| DNA gyrase subunit b [Mycoplasma mobile 163K]
          Length = 647

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 272/625 (43%), Positives = 398/625 (63%), Gaps = 17/625 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D++ N++Y   +IQ+L+GL+AV+KRP MYIG T G+ GLHH+I+E++DN+IDE++ G+A+
Sbjct: 5   DDMSNNNYSGKNIQVLEGLEAVRKRPGMYIG-TTGKKGLHHLIWEIVDNSIDEAMAGHAN 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + +TLN +G   + DNGRGIPTD+H++ G SA E ++T LHAGGKF++ +YKVSGGLHG
Sbjct: 64  QVKITLNKNGYAIIEDNGRGIPTDIHEKTGKSAVETVLTVLHAGGKFDKDTYKVSGGLHG 123

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDI 181
           VG SVVNALS+ L++ +KREG ++   F  G     L +       DTGT+++F P   I
Sbjct: 124 VGASVVNALSNHLEVWVKREGKLHYQEFRFGKPVKALNIISDVEESDTGTKISFFPDYSI 183

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
               +F YD +  R +++++LN  +++ L D+R  EP +I  +Y+GGI  +V  L+  KK
Sbjct: 184 MDKNEFEYDVIVDRAKQIAYLNRGLKLILRDERQEEPEDIEFYYEGGIIEYVEALNISKK 243

Query: 242 PLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            L ++ I  +G       +I++++A+++ D Y  N++ + NNI   +GGTH  G   AL 
Sbjct: 244 ALHENVIYAEGKEVGDEGDITVEVALQYTDSYQPNIVSYANNISTIEGGTHEQGFVDALI 303

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R   +Y  ++   K DK  +  DD REG T+++SIK  DP F  QTK KL + + R+   
Sbjct: 304 RIFNNYAGENKLMKNDKEKLTRDDIREGLTAIISIKHVDPVFEGQTKAKLGNKDARTATN 363

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             ++  L  +L E+P +AK+I++KVL +  +R +A  AR+ T +K    I+SLPGKLADC
Sbjct: 364 KVLSSVLYKFLLENPDQAKVIIEKVLFSQKIRFSASAAREATIKKNSFGISSLPGKLADC 423

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S ++ + SEL++VEG+SAGGSAK GR RE QAILPLRGK++N E+A   K+  + EI +L
Sbjct: 424 STKNAEISELYIVEGNSAGGSAKMGRDRETQAILPLRGKVINAEKANIVKVFENTEILSL 483

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTG+G   F+INKLRYHK++IMTDADVDGAHIRTLLLTF +     LI  GF+YI 
Sbjct: 484 ITALGTGVG-PEFNINKLRYHKVVIMTDADVDGAHIRTLLLTFLYHHFRPLIEYGFIYIA 542

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALK 596
           +PPLY I+ GKS QY   +   E+ L     ++          G +    L         
Sbjct: 543 QPPLYKISYGKSFQYAFSDAEKEEVLKQLLPNQKATIQRYKGLGEMDPEQLW-------- 594

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGV 621
            +  +        +  IE A I+ +
Sbjct: 595 -ETTMNPESRKMLQVQIEDAAIADL 618



 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 53/65 (81%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+  QLWETT+NP++R +L+V+I DA+ AD +FS LMG +V PRREFI++
Sbjct: 578 TIQRYKGLGEMDPEQLWETTMNPESRKMLQVQIEDAAIADLVFSTLMGGDVAPRREFIEK 637

Query: 795 NSLPS 799
           N+   
Sbjct: 638 NAKYV 642


>gi|225028834|ref|ZP_03718026.1| hypothetical protein EUBHAL_03121 [Eubacterium hallii DSM 3353]
 gi|224953830|gb|EEG35039.1| hypothetical protein EUBHAL_03121 [Eubacterium hallii DSM 3353]
          Length = 643

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 305/643 (47%), Positives = 409/643 (63%), Gaps = 6/643 (0%)

Query: 1   MSDNI--QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+        Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L 
Sbjct: 1   MSEEQISAAQEYGADQIQILEGLEAVRKRPGMYIGSTSS-KGLHHLVYEIVDNAVDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+ D + V +N D S TV DNGRGIP  ++K++GI A EV+ T LHAGGKF    YKVSG
Sbjct: 60  GFCDTVKVYINEDNSITVRDNGRGIPVGINKKKGIPAVEVVFTILHAGGKFGGGGYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG SVVNALS+WL++ I  EG IY   +  G +  PL + G   +  GTEV FLP 
Sbjct: 120 GLHGVGASVVNALSTWLEVDIFHEGKIYRQRYERGKVMYPLKIVGDT-DKRGTEVRFLPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF    F++  L+ RLRE++FL   ++I L DKR  E   +T  Y+GGI  +V YL++
Sbjct: 179 PTIFEETVFDFSVLKQRLREMAFLTKGLKIVLKDKRPEENVALTFHYEGGIREYVEYLNK 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L    I  +G + ++ +++A++ ND Y+E V  F NNI   +GGTHL+G RSALT+
Sbjct: 239 SKEVLYPQVIYCEGKKGDVVVEVALQHNDSYNEGVYSFVNNITTPEGGTHLAGFRSALTK 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
               Y  K+   K  ++++ GDD REG  +++SIK+P+P+F  QTK+KL +SE R  V+S
Sbjct: 299 TFNDYARKNKLLKDSEQNLTGDDIREGLVAIVSIKIPEPQFEGQTKQKLGNSEARGAVDS 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V++ L+ +LE++P  AKII +K + A   R+AAR+ARDLTRRK  LD  SLPGKLADCS
Sbjct: 359 VVSEQLTYFLEQNPNVAKIICEKAVLAQRAREAARKARDLTRRKSALDGMSLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ++DP+  E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE++R DK+L + EI  +I
Sbjct: 419 DKDPQNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILVNNEIRAMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGI +D FDI KLRY+KIIIMTDADVDGAHI TLLLTF +R MP LI  G +Y+ +
Sbjct: 479 TAFGTGIHED-FDITKLRYNKIIIMTDADVDGAHIATLLLTFLYRFMPDLIKEGHVYLAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRNFIDDALKI 597
           PPLY + + K + Y   +E L   L +               G +  + L     D  K 
Sbjct: 538 PPLYKVEKNKKVWYAYSDEELNKILTDIGRDGNNKIQRYKGLGEMDASQLWETTMDPEKR 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
             L  +   +                 E  +E   + A  + N
Sbjct: 598 ILLRVNMDDDAASELDMTFDTLMGDRVEPRREFIEANAKYVQN 640



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEEN----YLTILSL 707
            G   + DI   R  + +      ++G+ I +    +  R   + I+E         L  
Sbjct: 483 TGIHEDFDITKLRYNKIIIMTDADVDGAHIATLLLTFLYRFMPDLIKEGHVYLAQPPLYK 542

Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        L   +  IGR G + +QRYKGLGEM+ASQLWETT++P+ R LLRV
Sbjct: 543 VEKNKKVWYAYSDEELNKILTDIGRDGNNKIQRYKGLGEMDASQLWETTMDPEKRILLRV 602

Query: 766 KITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + D  AS+ D  F  LMGD VEPRREFI+ N+     LDI
Sbjct: 603 NMDDDAASELDMTFDTLMGDRVEPRREFIEANAKYVQNLDI 643


>gi|224531788|ref|ZP_03672420.1| DNA gyrase, B subunit [Borrelia valaisiana VS116]
 gi|224511253|gb|EEF81659.1| DNA gyrase, B subunit [Borrelia valaisiana VS116]
          Length = 634

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 283/639 (44%), Positives = 414/639 (64%), Gaps = 11/639 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVVDNSIDEALAGFCDKIDVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ I R+G I+  +F  GI  + + + G +   TGT+V FL  S+IF   D+N
Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEIVGESSI-TGTKVNFLADSEIFETLDYN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L+ RL+EL+FLN  + IS+ DKR    +    +++GGI++FV YL    K       
Sbjct: 180 FDVLEKRLKELAFLNDKICISIEDKRFGREKSSKFYFEGGIKSFVDYLTNDSKAFQSESY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G  D++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S 
Sbjct: 240 YIDGFLDDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE++ +VE  V D L   +
Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYDHLLKII 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +PLE   I+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 NLNPLEIDNILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCASKNPLEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI KLRYHK+IIM DADVDG+HIRTLLL FFFR M  LI NG++YI  PPLY I    
Sbjct: 480 -FDIKKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYVYIAMPPLYKINYDN 538

Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            + Y  +E+  E +L +    + +          G ++   L         +D   +   
Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             +    +E   I      +  +     +     N +N 
Sbjct: 594 LMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
            LD+I +  R  IS+QRYKGLGEMN +QLWETT++P  R +  + I DA +A+ +F  LM
Sbjct: 552 FLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAVEAEKIFVTLM 611

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           GD VEPR+EFI++N+L    LD+
Sbjct: 612 GDLVEPRKEFIEQNALNVINLDV 634


>gi|145577971|gb|ABP82704.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           mycoides]
          Length = 632

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 282/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+D+GRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + R+  I+   +  GI    L V G   + TGT   F P S+IF+   
Sbjct: 120 VVNALSTELEVFVHRDRKIHYQKYERGIPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DT   R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTSATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL+ + 
Sbjct: 478 GGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  + + LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 155/466 (33%), Gaps = 47/466 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTSATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 -------------WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
                        +         ++      V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|13878524|sp|O29720|GYRB_ARCFU RecName: Full=DNA gyrase subunit B
          Length = 632

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 283/593 (47%), Positives = 395/593 (66%), Gaps = 17/593 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +     Y A  I++L  L+AV+KRP MYIG   G  GLHH+++EV+DNA+DE+L GY
Sbjct: 1   MSPDQTAVEYTAKDIEVLDDLEAVRKRPGMYIGGV-GVRGLHHLLWEVVDNAVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V+L+ DGS +V DNGRGIPT++H E G SA E++MT+LHAGGKF++K Y+VSGGL
Sbjct: 60  CDTIKVSLHKDGSASVEDNGRGIPTEMH-ELGKSALEIVMTKLHAGGKFSKKVYRVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING----ILDNPLVVTGSAGNDTGTEVTFL 176
           HGVGVSVVNALS WL++ +KR G IY   +  G       +   V G    + GT V F 
Sbjct: 119 HGVGVSVVNALSEWLEVWVKRNGKIYYQKYQRGSRSPEAGHRTEVLGETK-EHGTTVRFK 177

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P  +IF   +F Y+ +  RL+EL++LN  ++I L D+R  +    T  ++ GI   V  L
Sbjct: 178 PDREIFETTEFKYEIVAQRLKELAYLNRGLKIILFDEREGKE--ETFHFEDGIIGLVRSL 235

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +R++KPL   PI I+ ++D +S+++A+++ D   EN+  F NNI   +GG+H+ G R+ L
Sbjct: 236 NRNRKPLH-EPIYIETTKDGVSVEVAIQFTDSDVENIQAFANNINTSEGGSHVVGFRAGL 294

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y +K     K    V G D REG T+V+S+K+P+P+F  QTK KL +S+V++VV
Sbjct: 295 TRAVNEYGKKH---LKKFEPVTGVDIREGLTAVISVKVPEPQFEGQTKTKLTNSDVKTVV 351

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES V  G+  WLEE+P +A+ ++ K +     R+AA+RA++L +RK  L I +LPGKLAD
Sbjct: 352 ESAVYSGVLRWLEENPAQAETLLNKFILNKKAREAAKRAKELVKRKNEL-ITTLPGKLAD 410

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS ++P++ ELF+VEG+SAGGSAKQ R R  QAILP++GKI+NVE+A   ++L + EI  
Sbjct: 411 CSSKNPEERELFIVEGESAGGSAKQARDRRFQAILPIKGKIINVEKAGMARVLKNDEIKA 470

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I+A+G GIG+D FDI K RY +IIIMTDADVDGAHIRTLLLTFF+R M  LI +G+LYI
Sbjct: 471 IISAIGAGIGKD-FDITKARYRRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYI 529

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +PPLY I +GK   Y   +E L+  L    +           G ++   L  
Sbjct: 530 AQPPLYQIKKGKKSYYAYSDEELKRTLEQ--VGGGEVQRYKGLGEMNPQQLWE 580



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 95/268 (35%), Gaps = 6/268 (2%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +  L      K  +             N+ ++       D      +      ++    
Sbjct: 370 AETLLNKFILNKKAREAAKRAKELVKRKNELITTLPGKLADCSSKNPEERELFIVEGESA 429

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
                +              +   + N E      V    ++   ++ I     K +  +
Sbjct: 430 GGSAKQARDRRFQAIL---PIKGKIINVEKAGMARVLKNDEIKAIISAIGAGIGKDFDIT 486

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                 ++      V    +      F +      I S  +      +  +         
Sbjct: 487 KARYRRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYIAQPPLYQIKKGKKSYYA 546

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L  T+  +G  G  +QRYKGLGEMN  QLWETT+NP+ R L++V + DA +AD+L
Sbjct: 547 YSDEELKRTLEQVG--GGEVQRYKGLGEMNPQQLWETTMNPENRILIQVTLEDAKRADEL 604

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           FS LMG++VE RR FI  +S     LDI
Sbjct: 605 FSILMGEDVESRRNFIMAHSKEVKNLDI 632


>gi|331083523|ref|ZP_08332635.1| DNA gyrase subunit B [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404216|gb|EGG83764.1| DNA gyrase subunit B [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 641

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 299/590 (50%), Positives = 396/590 (67%), Gaps = 4/590 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  I+   Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY
Sbjct: 1   MSTEIKT-EYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +N D S TV DNGRGIP  ++++ GI A EV+ T LHAGGKF    YKVSGGL
Sbjct: 59  CDTIDVAINEDNSITVIDNGRGIPVGINQKAGIPAVEVVFTILHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS+WL++ I  EG IY   +  G     L + G      TGT VTFLP  
Sbjct: 119 HGVGASVVNALSTWLEVTIFHEGKIYRQRYERGKTVYSLKIVGECEPEKTGTMVTFLPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    F++ TL+HR RE++FL   ++I   DKR  E +E+T  Y+GGI+ FV YL++ 
Sbjct: 179 EIFEETIFDFGTLKHRFREIAFLTKGLKIVARDKREEEEKEVTFHYEGGIKEFVQYLNKS 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
              L    +  +G++D + +++AM+ ND Y EN   F NNI   +GGTH+ G R+ALT+ 
Sbjct: 239 NTALYDDILYFEGNKDGVMVEVAMQHNDAYTENTYGFVNNITTPEGGTHIVGFRNALTKT 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
              Y  K+   K+ ++++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V+  
Sbjct: 299 FNEYARKNKLLKESEQNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDGI 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L  +LE++P  AKII++K L +   RDAAR+AR+LTRRK  LD  SLPGKLADC +
Sbjct: 359 VSNQLEIYLEQNPAVAKIIIEKSLLSQRARDAARKARELTRRKSALDGTSLPGKLADCVD 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K E+++VEGDSAGGS K  RSR  QAILPLRGKILNVE+AR DK+ ++ EI  +IT
Sbjct: 419 KDPSKCEIYIVEGDSAGGSTKTARSRATQAILPLRGKILNVEKARLDKIYANAEIKAMIT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ KP
Sbjct: 479 AFGTGIHED-FDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAKP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PL+ I + K + Y   E+   D L    +           G +  + L  
Sbjct: 538 PLFKIEKNKKIHYAYTEQEQADILAEIGMDGCNIQRYKGLGEMDADQLWE 587



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 10/160 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y+      +  
Sbjct: 482 TGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAKPPLFK 541

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
           +  N             D +  IG  G ++QRYKGLGEM+A QLWETT++P++R L+RV 
Sbjct: 542 IEKNKKIHYAYTEQEQADILAEIGMDGCNIQRYKGLGEMDADQLWETTMDPESRILMRVV 601

Query: 767 ITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + +   S+ D  F+ LMGD+VEPRREFI+EN+  +  LDI
Sbjct: 602 MDEDSTSELDLTFTTLMGDKVEPRREFIEENAKYAKNLDI 641


>gi|225377589|ref|ZP_03754810.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans DSM
           16841]
 gi|225210565|gb|EEG92919.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans DSM
           16841]
          Length = 640

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 308/653 (47%), Positives = 413/653 (63%), Gaps = 18/653 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y  D IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L GY   I V
Sbjct: 4   ENEYGGDQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNSVDEALAGYCKNIEV 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+N D S TV D+GRGIP D++ + G SA EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 63  TINEDNSITVEDDGRGIPVDINHKAGKSALEVVYTVLHAGGKFGGGGYKVSGGLHGVGAS 122

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ LK+ + REG +Y  S+  G  D P+ V G  G +  GT+VTF P   IF   
Sbjct: 123 VVNALSTKLKVEVYREGKVYFQSYKIGKPDEPVKVIGECGEDKHGTKVTFWPDGSIFEET 182

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YDTL+ RLRE +FL   ++I L D R    R     Y GGI+ FV+YL++ K+ L  
Sbjct: 183 VFDYDTLKQRLRETAFLTKGLRIVLTDLRENPVRTYDFHYAGGIKEFVTYLNKSKEALYP 242

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +GS + + +++AM+ ND Y+E  L F NNI   +GGTHL+G R+ALT+   +Y  
Sbjct: 243 EVIYCEGSGNGVYVEVAMQHNDSYNELTLSFVNNIITPEGGTHLAGFRNALTKTFNAYAR 302

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K ++ ++ GDD REG T+++S+K+ +P+F  QTK+KL +SE R  V+S V++ L+
Sbjct: 303 ANKLLKDNEPALTGDDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDSIVSEQLT 362

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK I +K L A   R+AAR+ARDLTRRK  L+  SLPGKLADCS++DPK  
Sbjct: 363 YFLEQNPTVAKTICEKSLLAQRAREAARKARDLTRRKTALEGMSLPGKLADCSDKDPKNC 422

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+F+VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR DK+  + EI  +ITA GTGI
Sbjct: 423 EIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGI 482

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FDI+KLRY+KIIIMTDADVDGAHI TL+LTF +R MP LI  G +Y+ +PPLY I 
Sbjct: 483 HED-FDISKLRYNKIIIMTDADVDGAHISTLMLTFLYRFMPDLIKEGHVYLAQPPLYKIE 541

Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
           + K++ Y   ++ L   L                 G +    L     D           
Sbjct: 542 KNKNVWYAYSDDELNAILTEIGRDGNNKIQRYKGLGEMDAEQLWETTMD----------- 590

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
               +K  +++ +I      E D      +  K+  R  FI E ++   +  I
Sbjct: 591 ---PEKRILKRVMIDDESTSEIDITFTTLMGDKVEPRREFIEENAKYVQNLDI 640



 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 63/106 (59%), Gaps = 6/106 (5%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRS 761
            +  +  N +         L   +  IGR G + +QRYKGLGEM+A QLWETT++P+ R 
Sbjct: 536 PLYKIEKNKNVWYAYSDDELNAILTEIGRDGNNKIQRYKGLGEMDAEQLWETTMDPEKRI 595

Query: 762 LLRVKITDASQADDL---FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L RV I D     ++   F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 596 LKRVMIDD-ESTSEIDITFTTLMGDKVEPRREFIEENAKYVQNLDI 640


>gi|145577995|gb|ABP82716.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar oswaldocruzi]
          Length = 631

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 287/585 (49%), Positives = 404/585 (69%), Gaps = 7/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VE DSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVE-DSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 476

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL+ + 
Sbjct: 477 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQ 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 536 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 580



 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/467 (18%), Positives = 155/467 (33%), Gaps = 50/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFY--------------PNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           D    D  I + Y                H +  +   +   + N E  +   +    ++
Sbjct: 408 DCSSKDPAISEIYIVEDSAGGSAKQGRDRHFQAIL--PLKGKIINVEKARLDKILSNDEV 465

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
              +  I       +         ++      V    +      F +    + I    I 
Sbjct: 466 RTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY 525

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLN 756
                 L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++
Sbjct: 526 -IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMD 584

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 585 PEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 631


>gi|254526641|ref|ZP_05138693.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221538065|gb|EEE40518.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 655

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 280/617 (45%), Positives = 402/617 (65%), Gaps = 17/617 (2%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+    N  ++ Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+
Sbjct: 1   MSEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+ D I + L  DGS  +SDNGRGIPTD+H   G SA E ++T LHAGGKF    YKV
Sbjct: 60  LAGHCDHIEIILRADGSALISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEV 173
           SGGLHGVG+SVVNALS W+ + + R+G+ +   F  G+    L      G +    GT +
Sbjct: 120 SGGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGLSKGELQTKKQIGKSSKK-GTTI 178

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGG 228
            F P   IFS   +F Y  L  RLREL++LN  V+I   D+R+       +E    Y+GG
Sbjct: 179 CFKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKEEIYLYQGG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGT 287
           I+ +V Y++  K+ +    I +   R+N+ ++ A++W  D Y +N+L F NNI   DGGT
Sbjct: 239 IKEYVEYMNAEKESIHPEIIYVDSQRENVYVEAALQWCSDVYSDNILGFANNIRTIDGGT 298

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+ GL++ LTR   +  +K    K  ++++ G++ REG T VLS+K+PDP F  QTK KL
Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++EVR +V+S + + L+ ++E +P    +I++K + +    +AARRAR+L RRK VL+ 
Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K
Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI +LITALG GI  + FD++ LRYH+++IMTDADVDGAHIRTLLLTFF+R    
Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKN 585
           L+  GF+YI  PPLY + RGK+  Y  +E  L++ +    ++ +  I+ F     ++ K 
Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENANYNIQRFKGLGEMMPKQ 598

Query: 586 DLRNFIDDALKIDKLIK 602
                ++   ++ K ++
Sbjct: 599 LWDTTMNPQTRMMKRVE 615



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 681 SIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQ 737
            + +F  +Y+R    +         L  +  G           L +TI   G     ++Q
Sbjct: 527 LLLTFFYRYQRELVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENANYNIQ 586

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           R+KGLGEM   QLW+TT+NP TR + RV+I DA +AD +F+ LMGD+V PRREFI+ +  
Sbjct: 587 RFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIFNILMGDKVAPRREFIETH-- 644

Query: 798 PSALD 802
            S LD
Sbjct: 645 SSNLD 649


>gi|116490131|ref|YP_809655.1| DNA gyrase subunit B [Oenococcus oeni PSU-1]
 gi|116090856|gb|ABJ56010.1| DNA gyrase subunit B [Oenococcus oeni PSU-1]
          Length = 652

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 286/639 (44%), Positives = 400/639 (62%), Gaps = 9/639 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+SY   SIQIL+GL+AV+KRP MYIG T   SGLHH+++E++DN IDE+L G+A  +T+
Sbjct: 15  NNSYGGSSIQILEGLEAVRKRPGMYIGST-ASSGLHHLVWEIIDNGIDEALAGFAHHVTL 73

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  D S T++D+GRG+P ++  + G  A E + T LHAGGKF+ KSYKVSGGLHGVG S
Sbjct: 74  TIEKDNSITITDDGRGVPVEIQPKTGRPAMEAVFTILHAGGKFDSKSYKVSGGLHGVGAS 133

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +R+ R+  IY M F  G +   + +         GT V F P  DIF   
Sbjct: 134 VVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDIFRET 193

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y TL  R+REL+FLN  +++S  DKR    +  +  Y+GGI  +V +L+++K+PL 
Sbjct: 194 IVFDYRTLASRIRELAFLNKGLRLSTTDKRVDPVKNESFMYEGGIAEYVKFLNKNKQPLF 253

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             P+ ++G  + I +++A+++ D   E ++ FTNNI   +GGTH +G + ALTR I  Y 
Sbjct: 254 PEPVYVEGEENGIQVEVALQYTDAVAETLMSFTNNIHTHEGGTHETGFKMALTRIINDYA 313

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +K    K     + G+D REG T+++SIK PDP+F  QTK KL +++ + VV    +   
Sbjct: 314 KKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDAQQVVNHQFSTIF 373

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + ++ E+P  A+ I  K L AS  R AA++ARDLTR+K  L+I++L GKLAD + RDP+ 
Sbjct: 374 NRFMMENPETARAIANKGLIASKARAAAKKARDLTRKKSGLEISALAGKLADNTSRDPEI 433

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG
Sbjct: 434 SELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANEEIRSLFTAMGTG 493

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG- 543
            G++ FDI+K  YHK+IIMTDADVDGAHIRTLLLT FFR M  LI  G++YI +PPLYG 
Sbjct: 494 FGEE-FDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYIYIAQPPLYGV 552

Query: 544 -ITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I       Y+  +E L+ Y      S +         G +    L +   D     + +
Sbjct: 553 AIGNSDQRVYLDSDEELDQYTATLPASPKPRIQRYKGLGEMDAVQLWDTTMDPKH--RRL 610

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
               P +         +      E  +E     A  + +
Sbjct: 611 LRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVED 649



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLW+TT++P  R LLRV      + D  F  LMGD VEPRREFI++N
Sbjct: 584 IQRYKGLGEMDAVQLWDTTMDPKHRRLLRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDN 643

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 644 AQFVEDLDV 652


>gi|327401204|ref|YP_004342043.1| DNA gyrase subunit B [Archaeoglobus veneficus SNP6]
 gi|327316712|gb|AEA47328.1| DNA gyrase, B subunit [Archaeoglobus veneficus SNP6]
          Length = 621

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 281/581 (48%), Positives = 399/581 (68%), Gaps = 13/581 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A+ I++L  ++AV+KRP MYIG   G  GLHH+++E++DN+IDE+L G+   ITVTL
Sbjct: 2   EYTAEQIEVLGDIEAVRKRPGMYIGGI-GLRGLHHLLWEIVDNSIDEALAGHCKNITVTL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + DGS +V D+GRGIPT++H E G  A E+++T+LHAGGKFN+K+YKV+GGLHGVG+SVV
Sbjct: 61  HKDGSASVEDDGRGIPTEVH-ELGRPAVEIVLTKLHAGGKFNKKAYKVAGGLHGVGLSVV 119

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL++ +KR G IY   +  G+   PL V G    +TGT++ F P  +IF   +F 
Sbjct: 120 NALSEWLEVWVKRNGKIYYQKYERGVPVTPLQVIGETK-ETGTKIRFKPDEEIFETTEFR 178

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D +  RL+EL++LN  +++ LID+RS +      + + GI+ FV+ L+++ KP++   I
Sbjct: 179 WDIVAQRLKELAYLNKGIRLKLIDERSGKS--KEFYSEDGIKGFVAQLNKN-KPVIHDVI 235

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                ++ I +++A+++ D   ENVL F NNI   +GGTH  G R+ LTR I  + +K  
Sbjct: 236 HFSEEKNGIMVEVAIQFTDTEIENVLFFANNINTIEGGTHAVGFRAGLTRAINEFGKK-- 293

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
              K  + + G D REG T+V+S+K+P+P+F  QTK KL +SEV++VVES V   +  WL
Sbjct: 294 -YVKKFKPLTGADIREGLTAVVSVKVPEPQFEGQTKTKLTNSEVKTVVESIVYSEVLKWL 352

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EEHP EA  I++K + A   R+AAR+AR++ RRKG + I +LPGKLADCS ++P++ ELF
Sbjct: 353 EEHPNEANRIIEKCILAMKAREAARKAREIVRRKGEISI-TLPGKLADCSSKNPEERELF 411

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEG+SAGGSAKQ R R  QAILP+RGKI+NVE+A   K L ++EI  +  A+G GIG+D
Sbjct: 412 IVEGESAGGSAKQARDRRFQAILPIRGKIINVEKAGMAKALRNEEIKAIAAAIGAGIGKD 471

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI K RY ++IIMTDADVDGAHIRTLLLTFF+R M  LI +G+LYI +PPLY + +GK
Sbjct: 472 -FDITKARYRRVIIMTDADVDGAHIRTLLLTFFYRYMKPLIESGYLYIAQPPLYRVKKGK 530

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            + YV  +  LED  + + +           G ++   L  
Sbjct: 531 KVYYVYSDRELED--LLERIGNAEVQRYKGLGEMNPEQLWE 569



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 3/184 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E           ++      I     K +  +      ++      V    +    
Sbjct: 440 IINVEKAGMAKALRNEEIKAIAAAIGAGIGKDFDITKARYRRVIIMTDADVDGAHIRTLL 499

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I S  +      +  +        +     L D +  IG     +QRYK
Sbjct: 500 LTFFYRYMKPLIESGYLYIAQPPLYRVKKGKKVYYVYSDRELEDLLERIG--NAEVQRYK 557

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT+NP  R L++V + DA++A++LFS LMG++VE R+ FI E+S    
Sbjct: 558 GLGEMNPEQLWETTMNPHNRYLIQVTLEDAARAEELFSVLMGEDVEARKRFIMEHSKEVR 617

Query: 800 ALDI 803
            LD+
Sbjct: 618 NLDV 621


>gi|325972866|ref|YP_004249057.1| DNA gyrase subunit beta [Spirochaeta sp. Buddy]
 gi|324028104|gb|ADY14863.1| DNA gyrase, B subunit [Spirochaeta sp. Buddy]
          Length = 677

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 286/610 (46%), Positives = 400/610 (65%), Gaps = 26/610 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M ++  + SY A SIQ+LKGL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE++ GY
Sbjct: 21  MMES-ASHSYSAGSIQVLKGLEAVRKRPGMYIGST-GIEGLHHLVYEVVDNSIDEAMAGY 78

Query: 61  ADIITVTLNMDGS----CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
              I V L++D      CTV DNGRGIP +LH  E  S+ E+ +T+LHAGGKF++ SYKV
Sbjct: 79  CSDIQVFLDLDSEGREICTVEDNGRGIPVELHPTEKKSSLEIALTQLHAGGKFDKNSYKV 138

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVS VNALS W+++ + R+G +Y   +  GI    +V  G   + +GT V+F 
Sbjct: 139 SGGLHGVGVSCVNALSIWMEVTVYRDGGVYRQQYSCGIPQTEVVRIGDT-DRSGTVVSFA 197

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   I     FNY+ L  R RELSFLN  V I++ D+R  E        +GGI  FVSYL
Sbjct: 198 PDYSIMEQNAFNYEVLVSRFRELSFLNKGVSITITDRRGDETHSQAFQSEGGISQFVSYL 257

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +  K+ L+  PI I+G +D+I +++A+++ND Y E VL + NNI  ++GGTHL+G R+ L
Sbjct: 258 NEFKRVLVDPPISIEGEKDSIKVEIALQYNDKYDEKVLSYVNNINTREGGTHLTGFRTGL 317

Query: 297 TRQITSYVEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +R I + ++K+    KK +  +   D  EG T+V+S+K+P+P+F  QTK KL +S V  V
Sbjct: 318 SRVINTQLQKNTKLLKKYEEKLEQSDISEGLTAVVSVKVPEPQFEGQTKMKLGNSAVTGV 377

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V S V + L  + +E P + ++I++K+++A++ R AAR+AR+  R+K       LPGKLA
Sbjct: 378 VFSLVYEKLGNYFDEFPAQTEVILEKIINAALGRIAARKAREQIRKKSE--GGGLPGKLA 435

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCSE+DP K E+F+VEGDSAGGSAKQGR R+ QAIL L GK+LNVE+A+  K+L + ++ 
Sbjct: 436 DCSEKDPAKCEVFIVEGDSAGGSAKQGRDRKFQAILALWGKMLNVEKAQEYKVLGNDKLQ 495

Query: 476 TLITALGTG------IGQD-------SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
            +I  +G G      +G+D       +FD++K+RYHK+IIM DADVDG+HIRTLLLTFFF
Sbjct: 496 PVIATIGAGLTRYNNMGKDEDFDHDVNFDVSKVRYHKVIIMADADVDGSHIRTLLLTFFF 555

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL---SEEIELFCDSK 579
           R M  LI  G++Y   PPLY IT GK +QY  DEE+    L   ++   S+         
Sbjct: 556 RYMRPLIEAGYVYFAMPPLYKITIGKKVQYAYDEEARVRILQENNIADPSKVAIQRYKGL 615

Query: 580 GVISKNDLRN 589
           G ++   L  
Sbjct: 616 GEMNPEQLWE 625



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 13/201 (6%)

Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK---SEKSWHGSINNSDILVKRIAR 669
           +E+A    V   +  Q +  ++ + L    N   ++    + ++  S      ++     
Sbjct: 480 VEKAQEYKVLGNDKLQPVIATIGAGLTRYNNMGKDEDFDHDVNFDVSKVRYHKVIIMADA 539

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
            V    +      F F      I +  +    +  L  I  G K++          I   
Sbjct: 540 DVDGSHIRTLLLTFFFRYMRPLIEAGYVY-FAMPPLYKITIGKKVQYAYDEEARVRILQE 598

Query: 730 ------GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
                  +  +++QRYKGLGEMN  QLWETT+NP+TR + ++K+ DA +AD +FS LMG+
Sbjct: 599 NNIADPSK--VAIQRYKGLGEMNPEQLWETTMNPETRLISQIKLHDAEEADRVFSMLMGE 656

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           EVEPRR FI  N++    LD+
Sbjct: 657 EVEPRRAFIDANAVYVSNLDV 677


>gi|167748047|ref|ZP_02420174.1| hypothetical protein ANACAC_02785 [Anaerostipes caccae DSM 14662]
 gi|317472423|ref|ZP_07931748.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA]
 gi|167652527|gb|EDR96656.1| hypothetical protein ANACAC_02785 [Anaerostipes caccae DSM 14662]
 gi|316900143|gb|EFV22132.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA]
          Length = 640

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 307/585 (52%), Positives = 398/585 (68%), Gaps = 4/585 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DESL GY D I 
Sbjct: 5   KKGEYGADQIQILEGLEAVRKRPGMYIGSTSA-KGLHHLVYEIVDNAVDESLAGYCDTIY 63

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTLN D S TV DNGRGIP  ++K++G+S+ EV+ T LHAGGKF    YKVSGGLHGVG 
Sbjct: 64  VTLNKDNSVTVRDNGRGIPVGMNKKKGVSSVEVVFTILHAGGKFGGGGYKVSGGLHGVGS 123

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+WL++ +  +G IY   +  G +  PL V G      GTEV+FLP   IF   
Sbjct: 124 SVVNALSNWLEVNVHTDGKIYNQRYEKGKVCYPLKVVGETE-LNGTEVSFLPDDTIFEET 182

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F Y  L+ RLRE +FL  +++I L D R  EP E    Y+GGI+ FV+YL+R K+ L  
Sbjct: 183 IFEYKVLRQRLRETAFLTKNLRIILRDDRQEEPVEEVFHYEGGIKEFVTYLNRGKEALYD 242

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +D + +++AM+ ND Y+EN L F NNI   +GGTHLSG ++ALT     Y  
Sbjct: 243 QVIYCEGEKDGVYVEVAMQHNDSYNENSLSFVNNIITPEGGTHLSGFKNALTTTFNDYAR 302

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K+++ ++ G+D REG TSV+SIK+ +P+F  QTK+KL +SE R  V S VN+ L+
Sbjct: 303 KNKLLKENESNLSGEDIREGLTSVISIKLGEPQFEGQTKQKLGNSEARGAVNSIVNEQLT 362

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AKII +K + A   RDAAR+ARDLTRRK  LD  SLPGKLADCS+++P+  
Sbjct: 363 YFLEQNPAVAKIICEKAVLAQRARDAARKARDLTRRKTALDGFSLPGKLADCSDKNPENC 422

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE++R DK+L ++EI  +ITA GTGI
Sbjct: 423 EIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILMNKEIQAMITAFGTGI 482

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D FDI KLRYHKIIIMTDADVDGAHI TLLLTFF+R MP LI  G++Y+ +PPLY + 
Sbjct: 483 -HDDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPDLIKEGYVYMAQPPLYRVE 541

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           R K   Y   ++ L + +                 G +    L +
Sbjct: 542 RNKKFWYAYSDQELNNIVNEIGRDNNNKIQRYKGLGEMDAEQLWD 586



 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 14/192 (7%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   + +  ++   +          +         ++      V    +    
Sbjct: 454 ILNVEKSRLDKILMNKEIQAMITAFGTGIHDDFDIEKLRYHKIIIMTDADVDGAHIATLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENY----LTILSLICNGDKI-KITGPCSLLDTIFSIGRKGIS 735
             F +     R   + I+E Y       L  +    K         L + +  IGR   +
Sbjct: 514 LTFFY-----RFMPDLIKEGYVYMAQPPLYRVERNKKFWYAYSDQELNNIVNEIGRDNNN 568

Query: 736 -MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLMGDEVEPRREFI 792
            +QRYKGLGEM+A QLW+TT++PD R LLRV I +  AS+ D  F+ LMGD+VEPRREFI
Sbjct: 569 KIQRYKGLGEMDAEQLWDTTMDPDKRVLLRVTIDEDSASEIDLTFTTLMGDQVEPRREFI 628

Query: 793 QENSLPS-ALDI 803
           + N+     LD+
Sbjct: 629 EANAKYVQNLDV 640


>gi|157414241|ref|YP_001485107.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9215]
 gi|157388816|gb|ABV51521.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9215]
          Length = 655

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 280/617 (45%), Positives = 401/617 (64%), Gaps = 17/617 (2%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+    N  ++ Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+
Sbjct: 1   MSEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+ D I + L  DGS  +SDNGRGIPTD+H   G SA E ++T LHAGGKF    YKV
Sbjct: 60  LAGHCDHIEIVLRADGSALISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEV 173
           SGGLHGVG+SVVNALS W+ + + R+G+ +   F  G+    L      G +    GT +
Sbjct: 120 SGGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGLSKGELQTKKQIGKSSKK-GTTI 178

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGG 228
            F P   IFS   +F Y  L  RLREL++LN  V+I   D+R+       +E    Y+GG
Sbjct: 179 CFKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKEEIYLYQGG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGT 287
           I+ +V Y++  K  +    I +   R+N+ ++ A++W  D Y +N+L F NNI   DGGT
Sbjct: 239 IKEYVEYMNAEKDSIHPEIIYVDSQRENVYVEAALQWCSDVYSDNILGFANNIRTIDGGT 298

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+ GL++ LTR   +  +K    K  ++++ G++ REG T VLS+K+PDP F  QTK KL
Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++EVR +V+S + + L+ ++E +P    +I++K + +    +AARRAR+L RRK VL+ 
Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K
Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI +LITALG GI  + FD++ LRYH+++IMTDADVDGAHIRTLLLTFF+R    
Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKN 585
           L+  GF+YI  PPLY + RGK+  Y  +E  L++ +    ++ +  I+ F     ++ K 
Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENANYNIQRFKGLGEMMPKQ 598

Query: 586 DLRNFIDDALKIDKLIK 602
                ++   ++ K ++
Sbjct: 599 LWDTTMNPQTRMMKRVE 615



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 681 SIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQ 737
            + +F  +Y+R    +         L  +  G           L +TI   G     ++Q
Sbjct: 527 LLLTFFYRYQRELVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENANYNIQ 586

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           R+KGLGEM   QLW+TT+NP TR + RV+I DA +AD +F+ LMGD+V PRREFI+ +  
Sbjct: 587 RFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIFNILMGDKVAPRREFIETH-- 644

Query: 798 PSALD 802
            S LD
Sbjct: 645 SSNLD 649


>gi|238915981|ref|YP_002929498.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750]
 gi|238871341|gb|ACR71051.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750]
          Length = 644

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 296/592 (50%), Positives = 400/592 (67%), Gaps = 5/592 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D     +Y  D IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DNAIDE+L G+
Sbjct: 1   MADQNAEKNYGGDQIQVLEGLEAVRKRPGMYIGSTS-GRGLHHLVYEIVDNAIDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V +N D S TV DNGRG+P D++ + G  A EV+ T LHAGGKF    YKVSGGL
Sbjct: 60  CTHIEVMINKDNSITVIDNGRGVPVDINHKTGRPAIEVVYTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVG SVVNALS WL++++KR G+IY+  +  G +   L + G     DTGT+VTFLP S
Sbjct: 120 HGVGASVVNALSEWLEVQVKRNGHIYQQRYERGKICYDLKIVGDCDIEDTGTQVTFLPDS 179

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     F +D L HRLRE++FL   ++I+L D R    ++    Y+GGI+ FV YL++
Sbjct: 180 EIFQETTVFEFDILMHRLREMAFLTKGIKITLTDLREGLEQQKVFHYEGGIKEFVQYLNK 239

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+PL    I  +G +DN+ +++A + NDGY+E V  F NNI   +GGTHL+G R++LT+
Sbjct: 240 SKEPLYSQIIYCEGVKDNVQVEVAFQHNDGYNEVVDSFVNNIKTPEGGTHLTGFRNSLTK 299

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
               Y  K+   K   + + GDD REG T+++S+K+ DP+F  QTK+KL ++  R  V+S
Sbjct: 300 TFNDYARKNKILKDSDQGLSGDDIREGLTAIVSVKIEDPQFEGQTKQKLGNTVARGAVDS 359

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V++ L+ +LE++P  AK I +K L A   R+AAR+ARDLTRRK  L+  SLPGKLADCS
Sbjct: 360 IVSEQLTYFLEQNPAVAKSICEKSLLAQRAREAARKARDLTRRKTALESTSLPGKLADCS 419

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ++DPK  E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR D++L + EI  +I
Sbjct: 420 DKDPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDRILGNAEIKAMI 479

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G +Y+ +
Sbjct: 480 TAFGTGIHED-FDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPDLIREGHVYLAQ 538

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN 589
           PPLY + + K + Y  +++ L   +      +  +       G +    L  
Sbjct: 539 PPLYKVEKNKKVWYAYNDDELNAIMTEIGRDQNNKVQRYKGLGEMDAEQLWE 590



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEEN----YLTILSL 707
            G   + DI   R  + +      ++G+ I +    +  R   + I E         L  
Sbjct: 484 TGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPDLIREGHVYLAQPPLYK 543

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        L+ I +   +  +  +QRYKGLGEM+A QLWETT++P  R LLRV
Sbjct: 544 VEKNKKVWYAYNDDELNAIMTEIGRDQNNKVQRYKGLGEMDAEQLWETTMDPHKRVLLRV 603

Query: 766 KI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +   D S+ D  FS LMGD+VEPRR+FI+ N+     LDI
Sbjct: 604 NMNEDDDSELDVTFSTLMGDKVEPRRDFIEANAKFVKNLDI 644


>gi|149182285|ref|ZP_01860764.1| DNA gyrase subunit B [Bacillus sp. SG-1]
 gi|148849977|gb|EDL64148.1| DNA gyrase subunit B [Bacillus sp. SG-1]
          Length = 638

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 302/646 (46%), Positives = 425/646 (65%), Gaps = 20/646 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  Q  SYD + IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY  
Sbjct: 2   EQEQRQSYDENQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGYCS 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D S TV DNGRGIP  +H++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 61  EIKVSIEKDNSITVQDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G I+   F  G+    L VTG + + TGT + F P  +IF
Sbjct: 121 VGASVVNALSTELEVFVHRDGKIHYQKFEKGVPSGDLKVTGES-DVTGTIIHFKPDPEIF 179

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +    + YD L +RLREL+FLN  ++I + D R  + +     Y+GGI+++V +L+R K+
Sbjct: 180 TETTEYEYDILANRLRELAFLNRGIKIIIEDNRVEDKKNE-YHYEGGIKSYVEHLNRSKE 238

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + + PI I+G +DNIS+++A+++NDG+  N+  F NNI   +GGTH SG ++ALTR I 
Sbjct: 239 VVHEEPIYIEGEKDNISVEIALQYNDGFASNLYSFANNIHTYEGGTHESGFKTALTRVIN 298

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ ++  +
Sbjct: 299 DYARKNHLYKESDANLSGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDALFS 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +   ++L E+P+ A+ +V K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS RD
Sbjct: 359 EHFESFLLENPVVARKVVDKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCSSRD 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PK SE+++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+LS+ E+  +ITAL
Sbjct: 419 PKISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAMITAL 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+D FDI+K RY K++IMTDADVDGAHIRTLLLTFF+R M  +I  G++YI +PPL
Sbjct: 479 GTGIGED-FDISKARYQKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQPPL 537

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I +GK ++YV  ++ LE+ L                           + +        
Sbjct: 538 YQIKQGKKIEYVYSDKQLEEALAQMP-----------AQPKPGIQRYKGLGEMNATQLWE 586

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
               P +    + Q  +      +   E+   +  K+  R NFI +
Sbjct: 587 TTMDPEY--RTLLQVSLEDAIEADETFEML--MGDKVEPRRNFIED 628



 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 6/200 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +  +     + +  S      +V  
Sbjct: 442 RHFQAIL--PLRGKIINVEKARLDKILSNNEVRAMITALGTGIGEDFDISKARYQKVVIM 499

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDT 725
               V    +      F +    + I +  I       L  I  G KI+ +     L + 
Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMRQIIEAGYIY-IAQPPLYQIKQGKKIEYVYSDKQLEEA 558

Query: 726 IFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
           +  +  +    +QRYKGLGEMNA+QLWETT++P+ R+LL+V + DA +AD+ F  LMGD+
Sbjct: 559 LAQMPAQPKPGIQRYKGLGEMNATQLWETTMDPEYRTLLQVSLEDAIEADETFEMLMGDK 618

Query: 785 VEPRREFIQENSLPS-ALDI 803
           VEPRR FI++N+     LD+
Sbjct: 619 VEPRRNFIEDNAAYVKNLDV 638


>gi|110803693|ref|YP_697357.1| DNA gyrase subunit B [Clostridium perfringens SM101]
 gi|110684194|gb|ABG87564.1| DNA gyrase, B subunit [Clostridium perfringens SM101]
          Length = 638

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 294/619 (47%), Positives = 420/619 (67%), Gaps = 11/619 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N +YDA  IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY   
Sbjct: 3   EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCKN 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 62  IKVYIHKDNSITVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS   ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF 
Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFE 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++++ L  RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L
Sbjct: 181 ETEYDFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVL 240

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI ++G +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y
Sbjct: 241 HDEPIYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDY 300

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             +    K+  +++ GDD REG T+V+S+K+ +P+F  QTK KL +SEVRS V+S   +G
Sbjct: 301 GRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRSAVDSISGEG 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +S +LEE+P   KII++K L AS  R+AARRAR+LT RK VL+ +SLPGKLADCS +DPK
Sbjct: 361 ISTFLEENPEVGKIIIEKALLASRAREAARRARELT-RKSVLERSSLPGKLADCSSKDPK 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L S  I +++TA+G 
Sbjct: 420 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 479

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG   FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY 
Sbjct: 480 GIG-PEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYK 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I++GK  +Y   + + ++ +      +        KG+         ++     +  +  
Sbjct: 539 ISKGKQERYAYSDAAADEIIEEFGGKDSSVNVQRYKGL-------GEMNAGQLWETTMDP 591

Query: 604 FYPNHDKTFIEQAVISGVF 622
                 +  IE A+++   
Sbjct: 592 ESRILLRADIEDAMVADEI 610



 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 5/128 (3%)

Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISM 736
            + +F  +Y R    +         L  I  G + +     +  D I     G+   +++
Sbjct: 511 LLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYSDAAADEIIEEFGGKDSSVNV 570

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P++R LLR  I DA  AD++F+ LMGD+VEPRREFIQ+N+
Sbjct: 571 QRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEIFTILMGDKVEPRREFIQKNA 630

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 631 KNVSNLDI 638


>gi|110799437|ref|YP_694481.1| DNA gyrase subunit B [Clostridium perfringens ATCC 13124]
 gi|168207731|ref|ZP_02633736.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987]
 gi|168215272|ref|ZP_02640897.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969]
 gi|170764021|ref|ZP_02637634.2| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626]
 gi|182420561|ref|ZP_02643926.2| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239]
 gi|182627057|ref|ZP_02954782.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721]
 gi|110674084|gb|ABG83071.1| DNA gyrase, B subunit [Clostridium perfringens ATCC 13124]
 gi|170660917|gb|EDT13600.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987]
 gi|170710064|gb|EDT22246.1| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626]
 gi|170713332|gb|EDT25514.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969]
 gi|177907583|gb|EDT70222.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721]
 gi|182379692|gb|EDT77171.1| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239]
          Length = 638

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 294/619 (47%), Positives = 420/619 (67%), Gaps = 11/619 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N +YDA  IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY   
Sbjct: 3   EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCKN 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 62  IKVYIHKDNSVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS   ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF 
Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFE 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++++ L  RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L
Sbjct: 181 ETEYDFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVL 240

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI ++G +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y
Sbjct: 241 HDEPIYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDY 300

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             +    K+  +++ GDD REG T+V+S+K+ +P+F  QTK KL +SEVRS V+S   +G
Sbjct: 301 GRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRSAVDSISGEG 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +S +LEE+P   KII++K L AS  R+AARRAR+LT RK VL+ +SLPGKLADCS +DPK
Sbjct: 361 ISTFLEENPEVGKIIIEKALLASRAREAARRARELT-RKSVLERSSLPGKLADCSSKDPK 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L S  I +++TA+G 
Sbjct: 420 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 479

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG   FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY 
Sbjct: 480 GIG-PEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYK 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I++GK  +Y   + + ++ +      +        KG+         ++     +  +  
Sbjct: 539 ISKGKQERYAYSDAAADEIIEEFGGKDSSVNVQRYKGL-------GEMNAGQLWETTMDP 591

Query: 604 FYPNHDKTFIEQAVISGVF 622
                 +  IE A+++   
Sbjct: 592 ESRILLRADIEDAMVADEI 610



 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 5/128 (3%)

Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISM 736
            + +F  +Y R    +         L  I  G + +     +  D I     G+   +++
Sbjct: 511 LLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYSDAAADEIIEEFGGKDSSVNV 570

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P++R LLR  I DA  AD++F+ LMGD+VEPRREFIQ+N+
Sbjct: 571 QRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEIFTILMGDKVEPRREFIQKNA 630

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 631 KNVSNLDI 638


>gi|291521103|emb|CBK79396.1| DNA gyrase subunit B [Coprococcus catus GD/7]
          Length = 636

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 307/635 (48%), Positives = 399/635 (62%), Gaps = 4/635 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A  IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L GY D I V
Sbjct: 2   SEGYGASQIQILEGLEAVRKRPGMYIGSTSA-KGLHHLVYEIVDNSVDEALAGYCDHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+N D S TV DNGRGIP  +  +    A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  TINKDNSITVVDNGRGIPVGIQAKAHKPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS WL++ +  +G  Y   +  G +   L   G      GT V FLP  +IF    
Sbjct: 121 VVNALSEWLEVNVYVDGYEYYQRYERGKVMCELQKIGPTE-KRGTTVHFLPDKEIFEETV 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y  L+ RLRE++FL   ++ISL D R  EP   +  Y+GGI  +V+YL++   PL   
Sbjct: 180 FDYKVLKQRLREIAFLTKGLRISLTDVREEEPILSSFHYEGGIREYVAYLNKANTPLYDE 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G +D + +++A++ NDGY+ENV  F NNI   +GGTHL G+RSALT+    Y  K
Sbjct: 240 IIYCEGEKDGVLVEVALQHNDGYNENVYSFVNNITTPEGGTHLVGMRSALTKTFNDYARK 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K +++S+ G+D REG T+++SIK+ +P+F  QTK+KL +SE R  VES V+D L  
Sbjct: 300 NKLLKDNEQSLTGEDIREGLTAIVSIKIGEPQFEGQTKQKLGNSEARGAVESIVSDKLGV 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LE++P   K+IV+K + A   RDAAR+ARDLTRRKG LD  SLPGKLADCS++DP K E
Sbjct: 360 FLEQNPAIGKLIVEKSVMAQRARDAARKARDLTRRKGALDSMSLPGKLADCSDKDPAKCE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR DK+L + EI  +ITA GTGI 
Sbjct: 420 IYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKILVNNEIKAMITAFGTGIH 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ KPPLY I R
Sbjct: 480 ED-FDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAKPPLYKIER 538

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            K   Y   ++ L   L      +          G +    L     D  +   +     
Sbjct: 539 NKKEWYAYSDDELNAILTEIGRDQNNKIQRYKGLGEMDAEQLWETTMDPERRILMRVSMD 598

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                +  E   +      E  +E     A  + N
Sbjct: 599 DAEKVSIDETFSVLMGDKVEPRREFIEKNAKYVRN 633



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G   + DI   R  + +      ++G+ I +    +  R   + I E Y+      +  
Sbjct: 476 TGIHEDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAKPPLYK 535

Query: 707 LICNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +  N  +        L   +  IGR +   +QRYKGLGEM+A QLWETT++P+ R L+RV
Sbjct: 536 IERNKKEWYAYSDDELNAILTEIGRDQNNKIQRYKGLGEMDAEQLWETTMDPERRILMRV 595

Query: 766 KITDASQA--DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + DA +   D+ FS LMGD+VEPRREFI++N+     LDI
Sbjct: 596 SMDDAEKVSIDETFSVLMGDKVEPRREFIEKNAKYVRNLDI 636


>gi|182416761|ref|ZP_02948158.1| DNA gyrase, B subunit [Clostridium butyricum 5521]
 gi|237669641|ref|ZP_04529619.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379418|gb|EDT76913.1| DNA gyrase, B subunit [Clostridium butyricum 5521]
 gi|237654875|gb|EEP52437.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 637

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 304/643 (47%), Positives = 424/643 (65%), Gaps = 11/643 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N  YD + IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY   
Sbjct: 2   EQNNRKYDENQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCKK 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +N D S TV D+GRG+P  +H + G S  EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 61  IEVNINKDNSITVIDDGRGMPVGIHPKMGKSTVEVIMTILHAGGKFGGGGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS   ++ +KREG I++  +  G +   +   G +  ++GT+V F P ++IF 
Sbjct: 121 GASVVNALSEECRVTVKREGAIWQQEYSKGKVLTDVEKIGESS-ESGTQVYFKPDAEIFD 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+++ L  RLREL+FLN  + I L+D R    +E    Y+GGI++FVSYL+R+K  L
Sbjct: 180 EVIFDFEILAQRLRELAFLNKGIYIKLVDLREENEKEEVFHYEGGIKSFVSYLNRNKVAL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + PI I+G +DN+S+++A+++NDGY EN+  F NNI   +GGTHL G ++ALTR    Y
Sbjct: 240 HEEPIYIEGIKDNVSVEVALQYNDGYTENIFSFANNIDTVEGGTHLVGFKTALTRAFNDY 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K    K++ ++  GDD REG T+V+S+K+ +P+F  QTK KL +SEVR +V+S V + 
Sbjct: 300 AKKFGHIKENDKNFTGDDIREGLTAVVSVKIEEPQFEGQTKTKLGNSEVRGIVDSIVGEC 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +S +LEE+P   K+IV K L A+  RDAAR+AR+LT RK VL+ ++LPGKLADCS +DPK
Sbjct: 360 ISTFLEENPSVGKMIVDKALMAARARDAARKARELT-RKSVLERSTLPGKLADCSSKDPK 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+++VEGDSAGGSAKQGR+R+ QAILPLRGKILNVE+ R D++L++  I +++TA G 
Sbjct: 419 ECEIYIVEGDSAGGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMVTAFGA 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG D FDI K+RY +IIIMTDADVDGAHIRTLLLTFF+R M  LI  G +YI +PPLY 
Sbjct: 479 GIGND-FDIEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIDEGHVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           I++GK   Y   +  LE  LI+     +          G ++ + L +       +D   
Sbjct: 538 ISKGKKEHYAYSDAELEQVLIDFGGKDNSTDIQRYKGLGEMNASQLWDT-----TMDPEQ 592

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +     + +  ++   I  +   E  +     +     N +N 
Sbjct: 593 RILLRVNVEDAMQADEIFTILMGEKVEPRKEFIQQNAKNVVNL 635



 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  A  + + +          +       D ++      V    +    
Sbjct: 452 ILNVEKQRLDRILNADTIRSMVTAFGAGIGNDFDIEKIRYDRIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQR 738
             F +      I    +      +  +     +        L   +   G K  S  +QR
Sbjct: 512 LTFFYRYMRPLIDEGHVYIAQPPLYKISKGKKEHYAYSDAELEQVLIDFGGKDNSTDIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMNASQLW+TT++P+ R LLRV + DA QAD++F+ LMG++VEPR+EFIQ+N+  
Sbjct: 572 YKGLGEMNASQLWDTTMDPEQRILLRVNVEDAMQADEIFTILMGEKVEPRKEFIQQNAKN 631

Query: 799 -SALDI 803
              LDI
Sbjct: 632 VVNLDI 637


>gi|28376979|ref|NP_783871.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1]
 gi|254555174|ref|YP_003061591.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1]
 gi|300769110|ref|ZP_07078999.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179196|ref|YP_003923324.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28269810|emb|CAD62707.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1]
 gi|254044101|gb|ACT60894.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1]
 gi|300493350|gb|EFK28529.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044687|gb|ADN97230.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 648

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 294/645 (45%), Positives = 421/645 (65%), Gaps = 16/645 (2%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M++N + +       YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN ID
Sbjct: 1   MTENEKETKLEQAREYDASQIQVLEGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIVDNGID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+A++I VT+  D S TV+DNGRGIP D+ ++ G  A E + T LHAGGKF    Y
Sbjct: 60  EALAGFANVIHVTVEKDNSITVTDNGRGIPVDIQEKTGKPALETVYTILHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEV 173
           KVSGGLHGVG SVVNALSS L +++ R G++Y M F  G +  P+ + G A +D  GT V
Sbjct: 120 KVSGGLHGVGASVVNALSSTLDVKVTRNGHVYYMDFERGKVKTPMKIIGDAPDDAHGTAV 179

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  DIF     ++ + L  R+REL+FLN  ++I++ D R  EP E    Y+GGI  +
Sbjct: 180 HFVPDPDIFRETTTYDINILTTRIRELAFLNKGLRITIRDNRPDEPTEDDFLYEGGIRHY 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLD++K  L   PI ++G ++ I++++A+++ D YH N++ FTNNI   +GGTH  G 
Sbjct: 240 VEYLDKNKTVLFPEPIYVEGEQNGITVEVALQYTDDYHSNLMTFTNNIHTYEGGTHEEGF 299

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           + ALTR I  Y  K+   K+   ++ G+D REG T+V+S+K PDP+F  QTK KL +S+ 
Sbjct: 300 KRALTRVINDYARKNNLLKESDANLSGEDVREGMTAVVSVKHPDPQFEGQTKTKLGNSDA 359

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+ V+   ++  S +L E+P  A+ +V K L AS  R AA+RAR++TR+K  L+I++LPG
Sbjct: 360 RAAVDRLFSEHFSKYLMENPSVARKVVDKGLLASKARVAAKRAREVTRKKSGLEISNLPG 419

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLAD S +DP+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  DK+L+++
Sbjct: 420 KLADNSSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASIDKILANE 479

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI +L TA+GTG G D FD++K  YHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G
Sbjct: 480 EIRSLFTAMGTGFGGD-FDLSKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAG 538

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFI 591
           F+YI +PPLY + +GK ++Y+  +E L + +   + S + +       G +    L    
Sbjct: 539 FVYIAQPPLYQVRQGKFVKYIDSDEELSEVMGQLAPSPKPVVQRYKGLGEMDAEQLWET- 597

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                +D   +      D+   +   +  +   +  +     +  
Sbjct: 598 ----TMDPDKRRLLRVRDEDAADADGVFSMLMGDQVKPRREFIED 638



 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++PD R LLRV+  DA+ AD +FS LMGD+V+PRREFI++N
Sbjct: 580 VQRYKGLGEMDAEQLWETTMDPDKRRLLRVRDEDAADADGVFSMLMGDQVKPRREFIEDN 639

Query: 796 SLPS-ALDI 803
           +     LD+
Sbjct: 640 AKFVQDLDV 648


>gi|304439074|ref|ZP_07398993.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372433|gb|EFM26020.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 637

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 296/649 (45%), Positives = 411/649 (63%), Gaps = 15/649 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N     Y A  IQ+L GL+ V+ RP MYIG T G  GLHH+IYEV+DN+IDE+L+G 
Sbjct: 1   MTNNRH---YGAGDIQVLTGLEPVRLRPGMYIGST-GPKGLHHLIYEVVDNSIDEALQGM 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+  DGS +VSDNG GIP + H + G S  E ++T LHAGGKF + +YKVSGGL
Sbjct: 57  CDTIEVTILKDGSVSVSDNGSGIPVEKHPQTGKSTVETVLTILHAGGKFKEGAYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179
           HGVGVSVVNALS+ L   +KR   +Y   F  G+    L V      + TGT + F P  
Sbjct: 117 HGVGVSVVNALSTKLVAEVKRNKKLYRQEFSRGVPQTELEVVEDLKEDVTGTTIIFHPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF   +F ++ L+ R RE++FLN +V+I   D+R    R+    Y+GGI++FV Y++R 
Sbjct: 177 EIFETVEFEFEVLEKRFREMAFLNKNVKIIFTDERVD--RQEIFHYEGGIKSFVEYINRK 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  + +  I  +   +N  +++A+++ D Y ENVL F NNI  ++GGTHLSG R+++TR 
Sbjct: 235 KTKIHKDVIYFEELAENTQVEVAIQYTDSYSENVLTFANNINTEEGGTHLSGFRASVTRT 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K    K+ + ++ GDD REG T+++S+K+P+P+F  QTK KL +SE R +V+  
Sbjct: 295 INDYGRKYNIIKEKEENLSGDDVREGMTAIISVKIPNPQFEGQTKSKLGNSETRGIVDGV 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++GL+A+LEE+P  AKII+ K L A   R+AAR+ARDLTR++ +LD  +LPGKL DC E
Sbjct: 355 VSNGLTAYLEENPKVAKIILDKALQARRAREAARKARDLTRKRSILDSMTLPGKLKDCHE 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            D   +E+FLVEGDSAGG+AK GR    QA+LPLRGKI+NVE+AR DK+L+S EI  +IT
Sbjct: 415 SDISVNEIFLVEGDSAGGTAKDGRDSNIQAVLPLRGKIMNVEKARLDKILNSDEIKAMIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGI ++ FDIN LRY KIIIMTDADVDGAHI TLLLTFFFR M  LI +G +Y+ KP
Sbjct: 475 AFGTGIDKE-FDINNLRYGKIIIMTDADVDGAHIMTLLLTFFFRHMKPLIEHGHIYVAKP 533

Query: 540 PLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFC-DSKGVISKNDLRNFIDDALKI 597
           PLYG+ RG+ + +Y  D+E LE  L      +  ++      G ++   L         +
Sbjct: 534 PLYGVKRGEKVIRYCYDDEELESALNELGRDKNYKIARYKGLGEMNAEQLWET-----TM 588

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
           +   +     + +  ++   +         +     +        N  A
Sbjct: 589 NPDSRILLRVNIEDVLDADDVFSTLMGVDVEPRREFIEENAKYAENIDA 637



 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  + ++   +       +K +  +      ++      V    ++   
Sbjct: 452 IMNVEKARLDKILNSDEIKAMITAFGTGIDKEFDINNLRYGKIIIMTDADVDGAHIMTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGR-KGISMQR 738
             F F      I    I      +  +      I+       L   +  +GR K   + R
Sbjct: 512 LTFFFRHMKPLIEHGHIYVAKPPLYGVKRGEKVIRYCYDDEELESALNELGRDKNYKIAR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMNA QLWETT+NPD+R LLRV I D   ADD+FS LMG +VEPRREFI+EN+  
Sbjct: 572 YKGLGEMNAEQLWETTMNPDSRILLRVNIEDVLDADDVFSTLMGVDVEPRREFIEENAKY 631

Query: 799 S-ALD 802
           +  +D
Sbjct: 632 AENID 636


>gi|169343479|ref|ZP_02864479.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495]
 gi|169298431|gb|EDS80520.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495]
          Length = 637

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 294/619 (47%), Positives = 420/619 (67%), Gaps = 11/619 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N +YDA  IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY   
Sbjct: 2   EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCKN 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 61  IKVYIHKDNSVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS   ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF 
Sbjct: 121 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFE 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++++ L  RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L
Sbjct: 180 ETEYDFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI ++G +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y
Sbjct: 240 HDEPIYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDY 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             +    K+  +++ GDD REG T+V+S+K+ +P+F  QTK KL +SEVRS V+S   +G
Sbjct: 300 GRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRSAVDSISGEG 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +S +LEE+P   KII++K L AS  R+AARRAR+LT RK VL+ +SLPGKLADCS +DPK
Sbjct: 360 ISTFLEENPEVGKIIIEKALLASRAREAARRARELT-RKSVLERSSLPGKLADCSSKDPK 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L S  I +++TA+G 
Sbjct: 419 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG   FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY 
Sbjct: 479 GIG-PEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I++GK  +Y   + + ++ +      +        KG+         ++     +  +  
Sbjct: 538 ISKGKQERYAYSDAAADEIIEEFGGKDSSVNVQRYKGL-------GEMNAGQLWETTMDP 590

Query: 604 FYPNHDKTFIEQAVISGVF 622
                 +  IE A+++   
Sbjct: 591 ESRILLRADIEDAMVADEI 609



 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 5/128 (3%)

Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISM 736
            + +F  +Y R    +         L  I  G + +     +  D I     G+   +++
Sbjct: 510 LLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYSDAAADEIIEEFGGKDSSVNV 569

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P++R LLR  I DA  AD++F+ LMGD+VEPRREFIQ+N+
Sbjct: 570 QRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEIFTILMGDKVEPRREFIQKNA 629

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 630 KNVSNLDI 637


>gi|291561640|emb|CBL40439.1| DNA gyrase subunit B [butyrate-producing bacterium SS3/4]
          Length = 636

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 293/585 (50%), Positives = 400/585 (68%), Gaps = 5/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y+AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I V
Sbjct: 2   SAEYNADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGYCDTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N D S TV D+GRGIP D+ K+ G+ A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  QINSDNSITVVDDGRGIPVDIQKKAGLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ +   G +Y+  +  G    PL + G    +  GT+VTFLP   IF   
Sbjct: 121 VVNALSEWLEVEVYHGGKVYKQRYERGKTMYPLKIVGDCPSDKHGTKVTFLPDKTIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            ++YDTL+ RLRE +FL  +++I L D R  +  ++   Y+GGI+ FV+YL+R   PL  
Sbjct: 181 VYDYDTLKIRLRETAFLTKNLKIILRDDREDKKEKV-FHYEGGIKEFVTYLNRSNVPLYD 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           + I  +G +DN+ +++AM+ ND Y EN+  F NNI   +GGTHL+G R+ALT+    Y  
Sbjct: 240 NVIYCEGKKDNVLVEVAMQHNDSYTENIYSFVNNINTPEGGTHLTGFRNALTKTFNDYGR 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K ++ ++ G+D REG T+++S+K+ +P+F  QTK+KL +SE R  V+S V++ L+
Sbjct: 300 KNKLLKDNEPALTGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDSVVSEQLT 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK I++K + A   R AAR+ARDLTRRK VLD  SLPGKLADCS + P++ 
Sbjct: 360 YFLEQNPSVAKTIIEKSVLAQRARAAARKARDLTRRKTVLDGLSLPGKLADCSSKHPEEC 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  R++  QAILPLRGKILNVE+AR D++  + EI ++ITA GTGI
Sbjct: 420 EIYIVEGDSAGGSAKDARNKSTQAILPLRGKILNVEKARLDRIYGNAEIKSMITAFGTGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY I 
Sbjct: 480 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKIE 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + K + Y   +E L + L      +          G +    L  
Sbjct: 539 KNKRVWYAYSDEELNNILKEIGRDQNNKIQRYKGLGEMDAEQLWE 583



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y       L  
Sbjct: 477 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYK 536

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           I    ++        L+ I     +  +  +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 537 IEKNKRVWYAYSDEELNNILKEIGRDQNNKIQRYKGLGEMDAEQLWETTMDPEHRVLLRV 596

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            + +    + D  F+ LMGD+VEPRREFI++N+    LDI
Sbjct: 597 TMNEEMTSEIDLTFTTLMGDQVEPRREFIEQNAKYGTLDI 636


>gi|295702247|ref|YP_003595322.1| DNA gyrase subunit B [Bacillus megaterium DSM 319]
 gi|294799906|gb|ADF36972.1| DNA gyrase, B subunit [Bacillus megaterium DSM 319]
          Length = 638

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 297/589 (50%), Positives = 417/589 (70%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +  +Y+AD IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 2   EQKEVQAYEADQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGYCD 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +  D S TV DNGRGIP  + ++ G  A EVI+T LHAGGKF    YKVSGGLHG
Sbjct: 61  EINVIIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G ++   +  G+    L V G   + TGT + F P  +IF
Sbjct: 121 VGASVVNALSTSLEVYVHRDGKVHYQKYERGVPAADLKVVGET-DKTGTVIQFHPDGEIF 179

Query: 183 SVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +   ++++DTL +RLREL+FLN  ++I++ DKR  + R     Y+GGI+++V +L+R K+
Sbjct: 180 TETLEYDFDTLANRLRELAFLNRGIKITIEDKREEDKRRE-YHYEGGIKSYVEHLNRAKE 238

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + + PI I+G+RDNIS+++A+++ND Y  N+  F NNI   +GGTH +G ++ALTR I 
Sbjct: 239 VIHEEPIYIEGNRDNISVEIAIQYNDSYTSNLYSFANNIHTYEGGTHEAGFKTALTRVIN 298

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S   
Sbjct: 299 DYARKNSVFKDSDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFA 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  +L E+P+ AK +++K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +D
Sbjct: 359 EHLETYLLENPIVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL++VEGDSAGGSAKQGRSR  QAILPLRGKI+NVE+AR DK+LS+ EI T+ITAL
Sbjct: 419 PSISELYVVEGDSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITAL 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG D FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 479 GTGIG-DDFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPL 537

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y +++GK ++Y  ++  LE+ L +     +         G ++   L  
Sbjct: 538 YKVSQGKKVEYAYNDRQLEEVLASFPEGAKPNLQRYKGLGEMNPEQLWE 586



 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 31/330 (9%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEE 557
           +DA++ G  +R  +      + P     G           +     +       Y+ +  
Sbjct: 310 SDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFAEHLETYLLENP 369

Query: 558 SLEDYLINQSLSEEIELFCDS--------KGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
            +   +I + L                  K  +  ++L   + D    D  I + Y    
Sbjct: 370 IVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEG 429

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDIL 663
            +    A      + ++   +   + +    RL+ I   +E          G  ++ DI 
Sbjct: 430 DSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITALGTGIGDDFDIS 489

Query: 664 VKRIARGVQ-EQFVLEGSSIFS----FGSKYKR-IFSNRIEENYLTILSLICNGDKIKIT 717
             R  + V      ++G+ I +    F  +Y R I  +         L  +  G K++  
Sbjct: 490 KARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPLYKVSQGKKVEYA 549

Query: 718 GPCSLLDTIFS---IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                L+ + +    G K  ++QRYKGLGEMN  QLWETT++P+ R+LL+V + DA +AD
Sbjct: 550 YNDRQLEEVLASFPEGAK-PNLQRYKGLGEMNPEQLWETTMDPEFRTLLQVNLQDAIEAD 608

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + F  LMGD+VEPRR FI+EN+     LDI
Sbjct: 609 ETFEILMGDKVEPRRNFIEENAQYVKNLDI 638


>gi|218246132|ref|YP_002371503.1| DNA gyrase subunit B [Cyanothece sp. PCC 8801]
 gi|257059181|ref|YP_003137069.1| DNA gyrase subunit B [Cyanothece sp. PCC 8802]
 gi|218166610|gb|ACK65347.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8801]
 gi|256589347|gb|ACV00234.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8802]
          Length = 641

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 296/643 (46%), Positives = 409/643 (63%), Gaps = 10/643 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S Y A  IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I
Sbjct: 1   MTTSDYGAQQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +N DGS TV+D+GRGIPTD+H   G SA E +MT LHAGGKF    YKVSGGLHGVG
Sbjct: 60  EIDINSDGSVTVTDDGRGIPTDIHPTTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
           +SVVNALS W+ + + REGNI+   +  G     L       + TGT ++FLP  +IFS 
Sbjct: 120 ISVVNALSEWVNVTVWREGNIHTQRYERGNPVTSLAANPDPDHSTGTSISFLPDIEIFSG 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+Y+TL  RLREL++LN+ V+I+  D R  E  + T  Y+GGI+ +V+Y+ R K  L
Sbjct: 180 GIEFDYNTLSGRLRELAYLNAGVKITFTDNRPAEIHQETYCYEGGIKEYVAYMCRDKDAL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            Q  I + G ++ + I++A++W  D Y +N+L F NNI   DGGTHL GL++ LTR I +
Sbjct: 240 HQDIIYVSGEKNGVQIEVALQWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTINN 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
              K    K+++ ++ G++ REG T V+S+K+P+P F  QTK KL ++EVR +V+S V +
Sbjct: 300 VARKRNKIKENEANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGE 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +LE +P  A  I++K + A    +AARRAR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 360 VLNEYLEFNPQVADNIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           ++SE+FLVEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI +LITALG
Sbjct: 420 EESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  + FD ++LRYH+++IMTDADVDGAHIRTLLLTFF+R    L+  G++YI  PPLY
Sbjct: 480 LGIKGEEFDPSQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYVYIACPPLY 539

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            + RG++  Y  +E  L+++L +   +           G +    L         ++   
Sbjct: 540 KVERGRNHVYCYNERELQEHLNSLPANANYTIQRFKGLGEMMPTQLWET-----TMNPET 594

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +       +   E   I  V   +               +LN 
Sbjct: 595 RTMKRVEIEDAAEADRIFTVLMGDRV-APRREFIETYGPKLNL 636



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           + +  S      +V      V    +      F +  + + +    +      +  +   
Sbjct: 485 EEFDPSQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYVYIACPPLYKVERG 544

Query: 711 GDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
            + +       L + + S+      ++QR+KGLGEM  +QLWETT+NP+TR++ RV+I D
Sbjct: 545 RNHVYCYNERELQEHLNSLPANANYTIQRFKGLGEMMPTQLWETTMNPETRTMKRVEIED 604

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
           A++AD +F+ LMGD V PRREFI+          LDI
Sbjct: 605 AAEADRIFTVLMGDRVAPRREFIETYGPKLNLTDLDI 641


>gi|168335262|ref|ZP_02693363.1| DNA gyrase subunit B [Epulopiscium sp. 'N.t. morphotype B']
          Length = 635

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 312/647 (48%), Positives = 425/647 (65%), Gaps = 15/647 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+NI    YD   IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+
Sbjct: 1   MSNNI----YDESQIQILEGLEAVRKRPDMYIGSTSA-KGLHHLVYEIVDNAVDEALAGF 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D +TVT++ D S +V DNGRGIP  +HK++GISAAEV+ T LHAGGKF    YKVSGGL
Sbjct: 56  CDKVTVTIHKDNSISVLDNGRGIPVGIHKDKGISAAEVVFTILHAGGKFGGGGYKVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALSSWL  R+ + G IYE  F  G +   L   G   + TGT V FLP   
Sbjct: 116 HGVGASVVNALSSWLISRVYQHGKIYEQKFKKGHVVESLHPIG-TTDQTGTFVHFLPDET 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +++  L+ R +E +FL   ++I LID+R     E    Y+GG+  FV +L+++K
Sbjct: 175 IFEETVYDFAILKKRFQETAFLTKGLKIKLIDERVEPKLEKIFHYEGGVSEFVLFLNKNK 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ ++    +G +D++SI++A   NDGY+EN+  F NNI   +GGTHLSG ++ALT+ +
Sbjct: 235 TPIYENIFYCEGEKDDVSIEVAFCHNDGYNENIFSFANNINTIEGGTHLSGFKNALTKTV 294

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K    K + +S+ G+D REG T V+SIK+ +P+F  QTK KLV++ VR++V++ V
Sbjct: 295 NDYAKKMKILKDNDKSLSGEDIREGITGVISIKISEPKFEGQTKTKLVNTNVRTIVDNIV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++    +LE++P  AKII++K   AS  RDAAR+ARDLTRRK VL+ ++LPGKLADCSER
Sbjct: 355 SEKFMIFLEQNPTIAKIIIQKATMASHARDAARKARDLTRRKNVLENSTLPGKLADCSER 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DPKK E+++VEGDSAGGSAK  RSR+NQAILPLRGKILNVE+AR DKML+S+EI  +ITA
Sbjct: 415 DPKKCEIYIVEGDSAGGSAKSARSRQNQAILPLRGKILNVEKARLDKMLASEEIRNMITA 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GI +D  +I KLRYHKII+MTDADVDGAHIRTLLLTFF+R    LI  GF+YI +PP
Sbjct: 475 FGAGINEDL-NIEKLRYHKIILMTDADVDGAHIRTLLLTFFYRFYRELITGGFIYIAQPP 533

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY + + K   Y  ++  LE  L     +           G ++ + L +       ++ 
Sbjct: 534 LYLVEKNKKKHYAYNDRELELILTEIGRNGITRMQRYKGLGEMNPDQLWDT-----TMNP 588

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS--KLANRLNF 644
             +     + +  +E   I      +  +     +    KL   L+ 
Sbjct: 589 ATRTLVKVNIEDAVEADEIFTALMGDKVEPRREFIKEYAKLVKNLDI 635



 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 15/238 (6%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
                     +  I + D       + +  +             +E+A +  +   E  +
Sbjct: 410 DCSERDPKKCEIYIVEGDSAGGSAKSARSRQNQAILPLRGKILNVEKARLDKMLASEEIR 469

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
            +  +  + +   LN    +  K           ++      V    +      F +   
Sbjct: 470 NMITAFGAGINEDLNIEKLRYHK-----------IILMTDADVDGAHIRTLLLTFFYRF- 517

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMN 746
           Y+ + +          L L+    K         L   +  IGR GI+ MQRYKGLGEMN
Sbjct: 518 YRELITGGFIYIAQPPLYLVEKNKKKHYAYNDRELELILTEIGRNGITRMQRYKGLGEMN 577

Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             QLW+TT+NP TR+L++V I DA +AD++F+ LMGD+VEPRREFI+E +     LDI
Sbjct: 578 PDQLWDTTMNPATRTLVKVNIEDAVEADEIFTALMGDKVEPRREFIKEYAKLVKNLDI 635


>gi|26553455|ref|NP_757389.1| DNA gyrase subunit B [Mycoplasma penetrans HF-2]
 gi|26453461|dbj|BAC43793.1| DNA gyrase subunit B [Mycoplasma penetrans HF-2]
          Length = 649

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 265/601 (44%), Positives = 385/601 (64%), Gaps = 16/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   + ++Y A +I+IL+GL+AV+KRP MYIG TD   GLHHM++E++DN+IDE++ G 
Sbjct: 1   MNKETKKNTYSASNIKILEGLEAVRKRPGMYIGSTD-IKGLHHMVWEIVDNSIDEAMTGN 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  IT+TL  +GS  V D+GRGIP + H +   S  E ++T LHAGGKF+  SYKVSGGL
Sbjct: 60  ASEITITLTKEGSAKVQDDGRGIPVEKHAKTKKSTVETVLTVLHAGGKFDNDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTG-SAGNDTGTEVTFLPS 178
           HGVG SVVNALSSWLK+ + +E   + + F + G     L VT   A    GT V F P 
Sbjct: 120 HGVGASVVNALSSWLKVWVYKEYKEHYIEFKDGGKPVADLKVTNEKASIKNGTIVEFYPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I    +F+ DT++ RL++L++LN  ++I+ ID+R+ +    T  + GGI+ +V  L+ 
Sbjct: 180 FEIMERAEFDADTIKSRLKQLAYLNKGIKINFIDERTDDK--ETFLFAGGIKQWVEELNN 237

Query: 239 HKKPLMQSPIRIQGS----------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            K+P++ + +  +            + NI +++A ++N  Y+ +   F NNI   +GG+H
Sbjct: 238 EKEPIVPTIVYDEREESVKAANNKDKYNIRVEVAFQYNKTYNNSTFTFCNNINTTEGGSH 297

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G + AL + I  +  +    K+    +  +D  EG T+++SIK P+P++  QTK KL 
Sbjct: 298 EEGFKFALQKIINKFAVEKKLLKETDEKISKEDAIEGLTAIVSIKHPNPQYEGQTKRKLG 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEVR  V + V++    +L E+P +A +I+KK L A   R  +  AR+ TRRK   +  
Sbjct: 358 NSEVRPFVSNVVSEIFEKYLLENPEDANVIIKKCLLAMEARKKSFEAREATRRKSPFESN 417

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADCS +D + SEL++VEGDSAGGSAK GR R  QAILPL+GKI+NVE+A+ DK+
Sbjct: 418 SLPGKLADCSTKDKEISELYIVEGDSAGGSAKLGRDRIFQAILPLKGKIINVEKAKSDKI 477

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S++EI  LITA+G G+G   F I+KLRY+KII+MTDADVDG+HIR LLLTF FR M  L
Sbjct: 478 FSNEEIINLITAIGAGVG-PEFKIDKLRYNKIILMTDADVDGSHIRILLLTFLFRYMYPL 536

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           + NG +YI  PPL+  + GKS +Y  DE++LE++    S  +         G ++ + L 
Sbjct: 537 LENGNVYIACPPLFKFSVGKSSKYAYDEKTLEEFKKENSKVKYQIQRYKGLGEMNPDQLW 596

Query: 589 N 589
            
Sbjct: 597 E 597



 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 4/219 (1%)

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645
             I +   ++           +  I QA++     + N E  +   +    ++ N +  I
Sbjct: 431 KEISELYIVEGDSAGGSAKLGRDRIFQAILPLKGKIINVEKAKSDKIFSNEEIINLITAI 490

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
                  +       + ++      V    +      F F   Y  + +  +      + 
Sbjct: 491 GAGVGPEFKIDKLRYNKIILMTDADVDGSHIRILLLTFLFRYMYPLLENGNVYIACPPLF 550

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
                          +L +      +    +QRYKGLGEMN  QLWETT++P  R LL+V
Sbjct: 551 KFSVGKSSKYAYDEKTLEEFKKENSKVKYQIQRYKGLGEMNPDQLWETTMDPKNRLLLKV 610

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            I DA  AD +FS LMGDEV PRREFI++N+     LDI
Sbjct: 611 TIEDALNADKVFSLLMGDEVAPRREFIEKNAKYVKNLDI 649


>gi|261403882|ref|YP_003240123.1| DNA gyrase subunit B [Paenibacillus sp. Y412MC10]
 gi|261280345|gb|ACX62316.1| DNA gyrase, B subunit [Paenibacillus sp. Y412MC10]
          Length = 636

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 297/624 (47%), Positives = 419/624 (67%), Gaps = 18/624 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  +   +YD + IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE++ G 
Sbjct: 1   MS--MNQPTYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEVVDNSIDEAMAGI 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I + ++ D S TV DNGRGIP   + +   S  EV+MT LHAGGKF    YKVSGGL
Sbjct: 58  CDHIEIIVHEDNSITVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGGGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALSS + +++KR+G+IY+  +  G+    + V G + +D GT VTFLP  +
Sbjct: 118 HGVGVSVVNALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGDS-DDHGTTVTFLPDPE 176

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    ++Y TL  R+REL+FLN  + ++L D+R+         Y+GGI  +V +L+  
Sbjct: 177 IFTETTVYDYTTLLTRIRELAFLNKGIALTLTDERTG--ASDYFKYEGGIIEYVKFLNEK 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L + PI ++GSRDNI +++++++ND Y EN+  F NNI   +GGTH SG +SALTR 
Sbjct: 235 KEALHEDPIYVEGSRDNIQVEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +SEVR +VES 
Sbjct: 295 INDYARKTGLIKDNTSNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESL 354

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + L  +L+E+P  ++ I++K L AS  R+AAR+AR++TRRK  L++++LPGKLADCS 
Sbjct: 355 FAEKLQEFLQENPAVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSS 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++LS+ EI  +IT
Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIIT 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGI  + FD++K RYHKIIIMTDADVDGAHIRTLLLTFF+R M  L+  G++YI +P
Sbjct: 475 ALGTGI-AEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQP 533

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKID 598
           PL+ I R K ++Y   E   ++ +     + +I        G ++   L          +
Sbjct: 534 PLFKIERNKVIRYAGSERERDEIIKEFGENVKINVQRYKGLGEMNAGQLW---------E 584

Query: 599 KLIKDFYPNHDKTFIEQAVISGVF 622
             +        +  IE A+++   
Sbjct: 585 TTMDPESRTMLQVTIEDAILADTL 608



 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 4/199 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +  +     + +  S      ++  
Sbjct: 440 RHFQAIL--PLRGKILNVEKARLDRILSNAEIRAIITALGTGIAEDFDLSKARYHKIIIM 497

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    K + +  I      +  +  N             + I
Sbjct: 498 TDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKIERNKVIRYAGSERERDEII 557

Query: 727 FSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
              G    I++QRYKGLGEMNA QLWETT++P++R++L+V I DA  AD LF  LMGD V
Sbjct: 558 KEFGENVKINVQRYKGLGEMNAGQLWETTMDPESRTMLQVTIEDAILADTLFDTLMGDNV 617

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRR+FIQE++     LD+
Sbjct: 618 EPRRDFIQEHAKSVRNLDV 636


>gi|328954619|ref|YP_004371952.1| DNA gyrase subunit B [Coriobacterium glomerans PW2]
 gi|328454943|gb|AEB06137.1| DNA gyrase subunit B [Coriobacterium glomerans PW2]
          Length = 674

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 287/595 (48%), Positives = 400/595 (67%), Gaps = 17/595 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + + Y+   I+IL+GL+AV+KRP MYIG T   SGLHH++YEV+DN++DE++ GY   I 
Sbjct: 3   KKNDYNGGEIKILEGLEAVRKRPGMYIGSTSA-SGLHHLVYEVVDNSVDEAMAGYCTRIG 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV DNGRGIP D H  + I   EV+MT LHAGGKF+ K+YKVSGGLHGVG+
Sbjct: 62  VTIHADNSVTVIDNGRGIPVDKHPVKRIPTLEVVMTILHAGGKFDNKAYKVSGGLHGVGI 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  +++++KR+GNIYEM F  G     + + G +   TGT +TF P  +IF   
Sbjct: 122 SVVNALSHRVRVQVKRDGNIYEMVFSRGKTVEKMHIVG-SSRSTGTTITFWPDDEIFETT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--LDRHKKPL 243
            F+YDTL++RL+E +FLN +++I++ D+R   PR     Y GGI  FV Y    +     
Sbjct: 181 IFDYDTLRNRLQETAFLNRNLRITITDERELAPRTEEFVYAGGIVDFVKYLNHGKDIPEG 240

Query: 244 MQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           ++ PI + G+            +++A++W+  Y ENV+C+ N+I   +GG HL G R+AL
Sbjct: 241 LKKPIYVSGASEEDAPVERTGEVEVALQWSSSYTENVMCYANDIFTPEGGMHLEGFRTAL 300

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  +    K+   ++ GDD REG  +V+S+K+ DP+F  QTK KL SS +R +V
Sbjct: 301 TRVINDYARRQNMIKEKDANLTGDDVREGLAAVISVKLADPQFEGQTKAKLGSSFMRGLV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
              ++DGLS +LEEHP   + IV+K   AS  R+AAR+AR+ TRRK +L+ A+LPGKLAD
Sbjct: 361 LKVLSDGLSDYLEEHPRAGREIVRKAQQASRARNAARKAREATRRKSLLETAALPGKLAD 420

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS RD + +ELF+VEGDSAGGSAK GR R+ QAILPLRGKILNVER    +  SS+ I +
Sbjct: 421 CSVRDAEMTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSETIQS 480

Query: 477 LITALGTGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           LITA+G+G+       + FD++K RYHKIIIMTDADVDGAHIRTLLLTFF++ M  LI  
Sbjct: 481 LITAIGSGVTQVQGDGEGFDVSKARYHKIIIMTDADVDGAHIRTLLLTFFYKYMRPLIDE 540

Query: 532 GFLYIIKPPLYGITRGKSLQYVK-DEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           GF+Y+  PP++G+  GK + YV  D  + E+ ++ ++++       +    +  +
Sbjct: 541 GFVYVACPPIFGVKVGKKIHYVYPDGRTPEEEILRRTITSLGLDPDEDADELEAD 595



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +G ++QRYKGLGEM+ +QL  TT++P TR L RV I DAS A+     LMG +V PRR++
Sbjct: 602 RGYAVQRYKGLGEMDPAQLASTTMDPKTRILQRVTIEDASLAERAVRELMGPDVAPRRDY 661

Query: 792 IQENSLPSA-LD 802
           I++++  +  LD
Sbjct: 662 IEKHAHDARFLD 673


>gi|145577993|gb|ABP82715.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar alesti]
          Length = 632

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 283/583 (48%), Positives = 400/583 (68%), Gaps = 6/583 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V++
Sbjct: 3   AYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D S  V+DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG SVV
Sbjct: 62  EEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF     +
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEY 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + P
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEEP 239

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K+
Sbjct: 240 VYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKN 299

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    +
Sbjct: 300 NILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKF 359

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE+
Sbjct: 360 LLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEI 419

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQGR    QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT IG 
Sbjct: 420 YIVEGDSAGGSAKQGRDCHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG 479

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FDI K RYHK+IIMTDADVDGAHIRTLL TFF+R M  +I  G++YI +PPL+ + +G
Sbjct: 480 D-FDIEKARYHKVIIMTDADVDGAHIRTLLFTFFYRYMGQIIECGYIYIAQPPLFKVQQG 538

Query: 548 KSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           K +QY  +++ LE  L       +         G ++   L  
Sbjct: 539 KKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 160/467 (34%), Gaps = 49/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                      + +      + + D+ ++       +          S   +S   L   
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D    D  I + Y     +    A      + ++   +   + +    RL+ I    E
Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDCHFQAILPLKGKIINVEKARLDKILSNDE 465

Query: 651 KSWHGSI------NNSDILVKRIAR-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE---- 699
                +        + DI   R  +  +     ++G+ I +    +   +  +I E    
Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLFTFFYRYMGQIIECGYI 525

Query: 700 -NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLN 756
                 L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++
Sbjct: 526 YIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMD 585

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LD
Sbjct: 586 PEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKFVKNLD 632


>gi|332299200|ref|YP_004441122.1| DNA gyrase, B subunit [Treponema brennaborense DSM 12168]
 gi|332182303|gb|AEE17991.1| DNA gyrase, B subunit [Treponema brennaborense DSM 12168]
          Length = 638

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 287/634 (45%), Positives = 407/634 (64%), Gaps = 10/634 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+SY A +I +LKGL+AV+KRP MYIG T G  GLHH++YEV+DN IDE++ G+ D I V
Sbjct: 2   NASYSASNITVLKGLEAVRKRPGMYIGST-GPDGLHHLVYEVVDNCIDEAMAGFCDTIVV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  D    V DNGRGIP D+H  EGISA E+++TRLHAGGKF++ SYKVSGGLHGVGVS
Sbjct: 61  VLEKDDIVRVEDNGRGIPVDIHPTEGISALELVLTRLHAGGKFDKGSYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
            VNALSSWL+  ++++G  Y M F  G  ++P+  TG+      T + +   S IF    
Sbjct: 121 CVNALSSWLEAYVEKDGKKYYMKFNTGAAESPVKETGTTDRRG-TTIRWKADSTIFTETT 179

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +N+D L  RLREL+FLNS ++I   D+R   P+E+   ++GGI  FVSYL+  KK + +
Sbjct: 180 TYNFDVLCTRLRELAFLNSGIKIVFRDERLTNPKEVVFQFEGGIRHFVSYLNEGKKVIPE 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ I G RD+I ++L +++NDGY+EN+L F N+I  ++GGTHL GL+SALT  +  +++
Sbjct: 240 EPVYISGERDDIQVELCIQYNDGYNENMLSFVNDINTREGGTHLEGLKSALTLVMNEFLK 299

Query: 306 KSFGSK---KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
            +         +  + G+D R G TSV+S+K+P+P+F  QTK KL ++EVR +V S  N+
Sbjct: 300 NNAKLLKKMDKEEKLTGEDVRAGLTSVISVKVPEPQFEGQTKTKLGNTEVRGIVASLSNE 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ + E++P   + I++K +  +  R AAR+A++ TRRK  +D   LPGKLADCS +DP
Sbjct: 360 QLTLFFEQNPRLIEQILEKAVSEAAARIAARKAKEATRRKNSMDSFGLPGKLADCSSKDP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            + E+++VEGDSAGGSAKQGR  + QAILPL GK+LNVE+ R DK++++ ++  +I +LG
Sbjct: 420 TECEVYIVEGDSAGGSAKQGRDPKIQAILPLWGKMLNVEKTRIDKVINNDKLQPVIASLG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG+D F++ KLRYHKIIIM DADVDG+HI TLLLTFFFR MP LI +G++YI  PPLY
Sbjct: 480 AGIGKD-FNVEKLRYHKIIIMADADVDGSHISTLLLTFFFRYMPQLIEHGYVYIAMPPLY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK   +V  +   ++ L      +        KG+         + +   +D   +
Sbjct: 539 KIKLGKKEHFVFSDAERDEILQTLGDDKGKVDIQRYKGL--GEMEWKELKE-TTMDPANR 595

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                     +    I      E  +     +  
Sbjct: 596 KMKRVELTDAVAADHIFTTLMGEEVEPRRKFIED 629



 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 2/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    KL   +  +     K ++        ++      V    +    
Sbjct: 454 MLNVEKTRIDKVINNDKLQPVIASLGAGIGKDFNVEKLRYHKIIIMADADVDGSHISTLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KG-ISMQR 738
             F F    + I    +      +  +     +  +       + + ++G  KG + +QR
Sbjct: 514 LTFFFRYMPQLIEHGYVYIAMPPLYKIKLGKKEHFVFSDAERDEILQTLGDDKGKVDIQR 573

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM   +L ETT++P  R + RV++TDA  AD +F+ LMG+EVEPRR+FI++N++ 
Sbjct: 574 YKGLGEMEWKELKETTMDPANRKMKRVELTDAVAADHIFTTLMGEEVEPRRKFIEDNAVY 633

Query: 799 SALDI 803
           + LD+
Sbjct: 634 ATLDV 638


>gi|294496880|ref|YP_003560580.1| DNA gyrase subunit B [Bacillus megaterium QM B1551]
 gi|294346817|gb|ADE67146.1| DNA gyrase, B subunit [Bacillus megaterium QM B1551]
          Length = 638

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 297/589 (50%), Positives = 417/589 (70%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +  +Y+AD IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D
Sbjct: 2   EQKEVQAYEADQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGYCD 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +  D S TV DNGRGIP  + ++ G  A EVI+T LHAGGKF    YKVSGGLHG
Sbjct: 61  EINVIIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ L++ + R+G ++   +  G+    L V G   + TGT + F P  +IF
Sbjct: 121 VGASVVNALSTSLEVHVHRDGKVHYQKYERGVPAADLKVVGET-DKTGTVIQFRPDGEIF 179

Query: 183 SVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +   ++++DTL +RLREL+FLN  ++I++ DKR  + R     Y+GGI+++V +L+R K+
Sbjct: 180 TETLEYDFDTLANRLRELAFLNRGIKITIEDKREEDKRRE-YHYEGGIKSYVEHLNRSKE 238

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + + PI I+G+RDNIS+++A+++ND Y  N+  F NNI   +GGTH +G ++ALTR I 
Sbjct: 239 VIHEEPIYIEGNRDNISVEIAIQYNDSYTSNLYSFANNIHTYEGGTHEAGFKTALTRVIN 298

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S   
Sbjct: 299 DYARKNSVFKDSDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFA 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  +L E+P+ AK +++K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +D
Sbjct: 359 EHLETYLLENPIVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL++VEGDSAGGSAKQGRSR  QAILPLRGKI+NVE+AR DK+LS+ EI T+ITAL
Sbjct: 419 PSISELYVVEGDSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITAL 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG D FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL
Sbjct: 479 GTGIG-DDFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPL 537

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y +++GK ++Y  ++  LE+ L +     +         G ++   L  
Sbjct: 538 YKVSQGKKVEYAYNDRQLEEVLASFPEGAKPNLQRYKGLGEMNPEQLWE 586



 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 31/330 (9%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEE 557
           +DA++ G  +R  +      + P     G           +     +       Y+ +  
Sbjct: 310 SDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFAEHLETYLLENP 369

Query: 558 SLEDYLINQSLSEEIELFCDS--------KGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
            +   +I + L                  K  +  ++L   + D    D  I + Y    
Sbjct: 370 IVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEG 429

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDIL 663
            +    A      + ++   +   + +    RL+ I   +E          G  ++ DI 
Sbjct: 430 DSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITALGTGIGDDFDIS 489

Query: 664 VKRIARGVQ-EQFVLEGSSIFS----FGSKYKR-IFSNRIEENYLTILSLICNGDKIKIT 717
             R  + V      ++G+ I +    F  +Y R I  +         L  +  G K++  
Sbjct: 490 KARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPLYKVSQGKKVEYA 549

Query: 718 GPCSLLDTIFS---IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                L+ + +    G K  ++QRYKGLGEMN  QLWETT++P+ R+LL+V + DA +AD
Sbjct: 550 YNDRQLEEVLASFPEGAK-PNLQRYKGLGEMNPEQLWETTMDPEFRTLLQVNLQDAIEAD 608

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + F  LMGD+VEPRR FI+EN+     LDI
Sbjct: 609 ETFEILMGDKVEPRRNFIEENAQYVKNLDI 638


>gi|262283011|ref|ZP_06060778.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA]
 gi|262261263|gb|EEY79962.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA]
          Length = 649

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/627 (44%), Positives = 409/627 (65%), Gaps = 10/627 (1%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q    +  YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQSQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +++ + G I+   +  G +   L V G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVKVYKNGQIHFQEYTRGQVVADLKVIGDT-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  + IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRIQELAFLNRGLSISITDKRDGMEQSKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K+ +  +PI   G  ++I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKEVIFDNPIYTDGEMEDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FDI+K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++Y
Sbjct: 479 SLFTAMGTGFGAD-FDISKCRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++      + ++  + ++L         SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYIQPGADQEIKLQEAL--ARYSEGRSKPSIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMDPEHRLMARVSVDDAAEADKI 622



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    +   I  G   +I      L   +S GR   S+QRYKGLGEM+  QLWETT++P+
Sbjct: 547 KVGSEVKEYIQPGADQEIK-LQEALAR-YSEGRSKPSIQRYKGLGEMDDHQLWETTMDPE 604

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 649


>gi|160935172|ref|ZP_02082555.1| hypothetical protein CLOBOL_00067 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441903|gb|EDP19600.1| hypothetical protein CLOBOL_00067 [Clostridium bolteae ATCC
           BAA-613]
          Length = 657

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 283/644 (43%), Positives = 388/644 (60%), Gaps = 14/644 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A  IQIL+GL+AV+KRPSMYIG T  + GLHHM+YE++DNA+DE+L G+  +I V
Sbjct: 11  TEDYGAAQIQILEGLEAVRKRPSMYIGSTSSQ-GLHHMVYEIVDNAVDEALAGHCTLIQV 69

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            LN DGS TV DNGRGIP  +  + G+SA +V+ T LHAGGKF+  +YKVSGGLHGVG S
Sbjct: 70  YLNKDGSVTVRDNGRGIPAGIQTKTGLSAIQVVFTVLHAGGKFDDSNYKVSGGLHGVGAS 129

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQ 185
           VVNALSS L +++ ++G  Y  S+  GI   P+   G     T GT VTF+P  DIF   
Sbjct: 130 VVNALSSHLHVQVDQDGFSYAQSYERGIPAAPVKQLGPCSQGTHGTTVTFMPDQDIFPSI 189

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDK---------RSPEPREITMFYKGGIEAFVSYL 236
            ++ + L+ RLRE +FL   ++ISL D                  T  ++ G++ FVS+L
Sbjct: 190 AWDRNILEERLRETAFLTQGLEISLYDLRRDPAGEATCPVTAWSRTFCFQNGLKDFVSWL 249

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           ++  +PL    I  +   D +  + A+  N  Y E +L F NNI   +GGTH++G R AL
Sbjct: 250 EQDGEPLYTGIISGRHETDKVQAEFALVHNSSYSEQLLSFANNISTPEGGTHVTGFRQAL 309

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           +R +  Y   +   K    S+  D+  EG T+VLS+++ D +F  QTK+KL SS VR VV
Sbjct: 310 SRAVNDYARNAKLLKDTDSSLSRDELSEGLTAVLSVRLQDAQFEGQTKQKLGSSHVRPVV 369

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  V   L+ +LE++P  AK I  K + A   R AAR AR++ RRK  L   SLPGKLAD
Sbjct: 370 EQMVYTRLTLFLEQNPAAAKAICDKAMLARKARTAARTAREMARRKTALSGLSLPGKLAD 429

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS ++P + ELF+VEGDSAGGSAK  RSRENQA+LPLRGKILNVE+A  D++ ++ EI  
Sbjct: 430 CSSKNPGECELFIVEGDSAGGSAKLARSRENQAVLPLRGKILNVEKASLDRISANAEIKA 489

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I+A GTGI  D+F +  LRY+KII+MTDADVDGAHI TLLLTF FR MP LI  G +++
Sbjct: 490 MISAFGTGI-LDTFSLENLRYNKIILMTDADVDGAHITTLLLTFLFRFMPKLIEEGHVFL 548

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
            +PPLY + +GK L Y   +  LE  +  I +  + +I+ +     + +       +D +
Sbjct: 549 AQPPLYRVEKGKKLWYAYSDSELEQTINAIGRDGTYKIQRYKGLGEMDAGQLWETTMDPS 608

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            +    I            +   I      E  +   +  A  +
Sbjct: 609 RRTLLRITINDMEMYHETCQTFSILMGDEVEPRKNFILEHAQYI 652



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/123 (43%), Positives = 68/123 (55%), Gaps = 10/123 (8%)

Query: 691 RIFSNRIEEN----YLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGE 744
           R     IEE         L  +  G K+        L  TI +IGR G   +QRYKGLGE
Sbjct: 535 RFMPKLIEEGHVFLAQPPLYRVEKGKKLWYAYSDSELEQTINAIGRDGTYKIQRYKGLGE 594

Query: 745 MNASQLWETTLNPDTRSLLRVKITDAS---QADDLFSRLMGDEVEPRREFIQENSLPSA- 800
           M+A QLWETT++P  R+LLR+ I D     +    FS LMGDEVEPR+ FI E++   + 
Sbjct: 595 MDAGQLWETTMDPSRRTLLRITINDMEMYHETCQTFSILMGDEVEPRKNFILEHAQYISM 654

Query: 801 LDI 803
           LDI
Sbjct: 655 LDI 657


>gi|332638148|ref|ZP_08417011.1| DNA gyrase subunit B [Weissella cibaria KACC 11862]
          Length = 648

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 289/646 (44%), Positives = 409/646 (63%), Gaps = 17/646 (2%)

Query: 1   MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M++        Q   YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN ID
Sbjct: 1   MAEEDVTQMHTQADDYDASQIQVLEGLEAVRKRPGMYIGTTTSQ-GLHHLVWEIVDNGID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+AD ITVT+  D S TV+DNGRGIP D+ ++ G  A E + T LHAGGKF    Y
Sbjct: 60  EALAGFADHITVTIEKDNSITVTDNGRGIPVDIQEKTGKPALETVFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTE 172
           KVSGGLHGVG SVVNALS+ L   + R+G  Y M F  G +   +       A    GT 
Sbjct: 120 KVSGGLHGVGASVVNALSTELDAVVVRDGKGYAMDFERGHVKTSMHNVPVDDAPVSRGTI 179

Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V FLP  DIF     ++Y  L +R+REL+FLN  ++IS+ D R  EP   +  Y+GGI+ 
Sbjct: 180 VHFLPDPDIFRETTVYDYKILMNRVRELAFLNKGLRISIADNRPDEPISESFHYEGGIKE 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           +V +L+ +K  +   PI ++G  + I +++++++ D YH N+L FTNNI   +GGTH +G
Sbjct: 240 YVDFLNTNKDVIFDDPIYVEGMDNGIEVEVSLQYTDDYHSNMLSFTNNIHTYEGGTHETG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +SALTR I  Y  K+   K+   ++ GDD REG T+++S+K PDP+F  QTK KL +S+
Sbjct: 300 FKSALTRVINDYARKNNLLKESDDALSGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSD 359

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            R+ V+   ++  S ++ E+P  AK IV+K + A   R AA+RAR+ TR+K  L+IA+LP
Sbjct: 360 ARTAVDRMFSETFSRFMLENPTVAKQIVEKGILAGKARLAAKRAREATRKKSGLEIANLP 419

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLAD + +DP+ SELF+VEGDSAGGSAKQGR R  QAILP+RGKILNVE+A  DK+L++
Sbjct: 420 GKLADNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASLDKILAN 479

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +EI +L TA+GTG G + FD+ K +YHK+IIMTDADVDGAHIRTLLLT  +R M  L+  
Sbjct: 480 EEIRSLFTAMGTGFGNE-FDVTKAKYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLEA 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590
           G++YI +PPLY + +GK +QY+  +E LE  L     S + +       G +    L   
Sbjct: 539 GYIYIAQPPLYQVRQGKFVQYLDSDEELEALLPTLPASPKPVIQRYKGLGEMDAEQLWET 598

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                 +D  ++          ++  ++  +   +  +     +  
Sbjct: 599 -----TMDPSVRRLLRVEMDDAVDADMVFSMLMGDKVEPRREFIEE 639



 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 44/68 (64%), Positives = 56/68 (82%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P  R LLRV++ DA  AD +FS LMGD+VEPRREFI+EN
Sbjct: 581 IQRYKGLGEMDAEQLWETTMDPSVRRLLRVEMDDAVDADMVFSMLMGDKVEPRREFIEEN 640

Query: 796 SLPSALDI 803
           +  + LD+
Sbjct: 641 AQYAELDV 648


>gi|218134381|ref|ZP_03463185.1| hypothetical protein BACPEC_02275 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989766|gb|EEC55777.1| hypothetical protein BACPEC_02275 [Bacteroides pectinophilus ATCC
           43243]
          Length = 638

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 293/585 (50%), Positives = 397/585 (67%), Gaps = 5/585 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A+ IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY   I V 
Sbjct: 2   AEYGAEQIQILEGLEAVRKRPGMYIGTTSS-RGLHHLVYEIVDNAVDEALAGYCTEIDVL 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N D S TV+DNGRG+P D++ + G  A EV+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 61  INKDNSITVTDNGRGVPVDINAKAGKPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186
           VNALS WL++R+KR G+IYE  +  G +  PL + G     +TGT V FLP  +IF+   
Sbjct: 121 VNALSEWLEVRVKRNGHIYEQRYQRGKVMEPLTIVGECPLEETGTMVHFLPDKEIFTETT 180

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + YD L+ RLRE++FL   ++I L D+R    +E    Y+GGI+ FV YL++ K PL +
Sbjct: 181 VYEYDILKQRLREMAFLTKGIKIILRDEREGIEQERVFHYEGGIKEFVEYLNKSKTPLYE 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G ++N+ +++AM+ ND Y E+   F NNI   +GGTHL+G ++ALT+    Y  
Sbjct: 241 QIIYCEGVKNNVQVEVAMQHNDSYTESTFTFVNNINTPEGGTHLAGFKNALTKTFNDYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K   +++ GDD REG T+++S+K+ DP+F  QTK+KL ++E R+ V+S V++ L+
Sbjct: 301 ANRILKDSDQNLTGDDIREGLTAIVSVKIEDPQFEGQTKQKLGNTEARTAVDSVVSEQLT 360

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK I +K L A   RDAAR+ARDLTRRK  L+  SLPGKLADC++++P+  
Sbjct: 361 YFLEQNPAVAKAICEKSLLAQRARDAARKARDLTRRKTALESTSLPGKLADCTDKNPENC 420

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR D +L + EI  +ITA GTGI
Sbjct: 421 EIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDHVLGNAEIKAMITAFGTGI 480

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G +Y+ +PPLY I 
Sbjct: 481 -HDDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGHVYLAQPPLYKIE 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN 589
           + K + Y   +E L + +      +  +       G +    L  
Sbjct: 540 KNKKVWYAYSDEELNNIMTEIGRDQNNKVQRYKGLGEMDAEQLWE 584



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 5/106 (4%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760
             L  I    K+        L+ I +   +  +  +QRYKGLGEM+A QLWETT++P+ R
Sbjct: 533 PPLYKIEKNKKVWYAYSDEELNNIMTEIGRDQNNKVQRYKGLGEMDAEQLWETTMDPEKR 592

Query: 761 SLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LLRV + D  AS+ D  F+ LMGD+VEPRREFI+ N+     LDI
Sbjct: 593 ILLRVNMDDDSASELDVTFTTLMGDKVEPRREFIETNAKYVKNLDI 638


>gi|227876546|ref|ZP_03994657.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227842860|gb|EEJ53058.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 671

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 271/604 (44%), Positives = 367/604 (60%), Gaps = 27/604 (4%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD       YDA  I +L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DE+L G
Sbjct: 1   MSDFEKPEEHYDAADITVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I VTL  DGS  V DNGRGIP   H  E     EV+MT LHAGGKF   SY VSGG
Sbjct: 60  YCDHIEVTLQADGSVKVCDNGRGIPVAEHPTEHRPTVEVVMTILHAGGKFGGSSYAVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS+ +   +KR+G  + + F NG      +  G    +TGTE  F P  
Sbjct: 120 LHGVGISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDP 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEP 218
            IF   +F+Y+TL+ R ++++FLN  ++I++ D+R                         
Sbjct: 180 AIFETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADVDADSPKVGH 239

Query: 219 REITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQG-SRDNISIDLAMRWNDGYHENVLC 275
           R ++  Y+ G+  +VS+++  K  + +    I  +    D++++++A++W   Y E++  
Sbjct: 240 RHVSYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYT 299

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + N I   +GGTH  G RSALT  +  Y       K    ++ GDDCREG T+V+S+K+ 
Sbjct: 300 YANTINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLR 359

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL ++E R+ V+  V   L  W + HP EAK I+ K   A + R+AAR+A
Sbjct: 360 TPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKA 419

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RD TRRK  LD  S+PGKL DCS RD  + E+F+VEGDSAGGSA  GR   +QAILPLRG
Sbjct: 420 RDATRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRG 479

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR DK L ++EI +LITA GTGIG+D FD++KLRYHKI++M DADVDG HI T
Sbjct: 480 KILNVEKARLDKALDNKEIQSLITAFGTGIGED-FDLSKLRYHKIVLMADADVDGQHIAT 538

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLT  FR M  LI  G +++  PPLY +            +  +D L++  L     L 
Sbjct: 539 LLLTLLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKDKLLDMGLEGGGRLP 598

Query: 576 CDSK 579
            +  
Sbjct: 599 KEGG 602



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  +LWETT++P  R L +V + +A+ AD+ FS LMG++V  RR FIQ N
Sbjct: 603 IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDEAASADETFSLLMGEDVASRRSFIQRN 662

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 663 AQDVRFLDI 671


>gi|307352947|ref|YP_003893998.1| DNA gyrase,subunit B [Methanoplanus petrolearius DSM 11571]
 gi|307156180|gb|ADN35560.1| DNA gyrase, B subunit [Methanoplanus petrolearius DSM 11571]
          Length = 640

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 283/592 (47%), Positives = 395/592 (66%), Gaps = 11/592 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++Y+A +I +L+GL+ V++RP+MYIG TD   GLHH++YEV+DNA+DE+L G  D I
Sbjct: 1   MAQNNYNASNITVLEGLEPVRERPAMYIGSTD-VRGLHHLVYEVVDNAVDEALAGVCDHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
            VTL  DG+CTV DNGRGIP D+ +E+ G SA EV+MT LHAGGKF++ +Y+VSGGLHGV
Sbjct: 60  IVTLGRDGTCTVEDNGRGIPVDIMEEQDGKSALEVVMTVLHAGGKFDKNTYQVSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG----SAGNDTGTEVTFLPSS 179
           GVSVVNALS +L++ + R+G IY+M F  G L + L         A    GT+++F P +
Sbjct: 120 GVSVVNALSEFLQVEVFRDGYIYDMGFARGGLKSDLTSRKNAAPDAFEKHGTKISFKPDA 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    F+YD L HR+REL+FLN  + I + D+RS         Y+GGI  FV+YL   
Sbjct: 180 LIFETVTFDYDILSHRMRELAFLNRGITIEISDERSG--YADIFNYEGGISEFVTYLITG 237

Query: 240 KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           K+ +    I            +++A++++  Y E ++ F N++  ++GGTHL G RSALT
Sbjct: 238 KETVHPDVIYFDTKDAASMTEVEVALQYSTAYSETMMTFVNSVNTREGGTHLEGFRSALT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I    + +   K    S+ G+D REG  +V+S+K+ +P+F  QTK +L +S V+ +V+
Sbjct: 298 RAINKSAKDNNLMKGMSESLKGEDVREGLVTVISLKVANPQFEGQTKMRLGNSNVKGIVD 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V   L+ + EE+P   + IV K + A+  R+AAR+AR+L RRK  L+   LPGKLADC
Sbjct: 358 SLVYQSLTEYFEENPKVIQAIVSKAVGAARAREAARKARELARRKSTLESGGLPGKLADC 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERDP KSE+++VEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+A   ++L + EI TL
Sbjct: 418 SERDPSKSEIYIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKANPHRILKNAEIQTL 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I+A+G G G+  FD+ K RYH II MTDADVDGAHI TLLLTFF+R MP LI  G++YI 
Sbjct: 478 ISAIGCGFGES-FDVEKARYHHIIFMTDADVDGAHICTLLLTFFYRYMPELIEKGYIYIA 536

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +PPL+ + +GK+ +Y   EE ++ Y+                G ++ + L +
Sbjct: 537 QPPLFRVAKGKNEKYAFSEEEMKRYVKEFGDKGVSVQRYKGLGEMNADQLWH 588



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +   +++   ++ I     +S+         ++      V    +    
Sbjct: 457 ILNVEKANPHRILKNAEIQTLISAIGCGFGESFDVEKARYHHIIFMTDADVDGAHICTLL 516

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +    + I    I      +  +    ++        +   +   G KG+S+QRYK
Sbjct: 517 LTFFYRYMPELIEKGYIYIAQPPLFRVAKGKNEKYAFSEEEMKRYVKEFGDKGVSVQRYK 576

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLW TT+ P++R L +V + +AS AD++FS+LMGD+VE R+EFI  +S    
Sbjct: 577 GLGEMNADQLWHTTMAPESRVLKQVSVIEASYADEIFSKLMGDDVEARKEFIIRHSKEVT 636

Query: 800 ALDI 803
            LDI
Sbjct: 637 NLDI 640


>gi|229824639|ref|ZP_04450708.1| hypothetical protein GCWU000282_01986 [Catonella morbi ATCC 51271]
 gi|229786010|gb|EEP22124.1| hypothetical protein GCWU000282_01986 [Catonella morbi ATCC 51271]
          Length = 640

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 290/646 (44%), Positives = 421/646 (65%), Gaps = 10/646 (1%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++ +Q+   YDA  IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L G
Sbjct: 1   MTEQMQSPQQYDAGQIQVLEGLEAVRKRPGMYIGSTS-IVGLHHLVWEIVDNSIDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I VT+  + S TV DNGRGIP D+  + G  A E + T LHAGGKF    YKVSGG
Sbjct: 60  YCDHIEVTIEANNSITVQDNGRGIPVDIQPQTGRPAVETVFTVLHAGGKFGGGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS+ L +++ R+G +Y+  +  G ++  L V G A  +TGT+V FLP  
Sbjct: 120 LHGVGASVVNALSTELTVQVSRDGKLYQQRYHRGAVEGDLEVIGQAT-ETGTKVNFLPDP 178

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF+    F Y+ L+ R+REL+FLN  ++I++ DKR  +  + +  Y+GGI+++V +L++
Sbjct: 179 AIFTETTVFEYERLKKRIRELAFLNKGLRITIEDKRLDQEEKDSFHYEGGIKSYVQHLNQ 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           HK P+ + PI I+G  D+I ++++M++ D YH  +L F NNI   +GG+H +G ++ LTR
Sbjct: 239 HKTPIFEEPIYIEGEVDDIQVEISMQYTDSYHTTILSFANNIHTHEGGSHEAGFKTGLTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K++  ++ G+D REG T VLSIK PDP+F  QTK KL +SEVR++ + 
Sbjct: 299 VINDYARKMNLIKENDENLTGEDVREGLTLVLSIKHPDPQFEGQTKTKLGNSEVRAITDR 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++G   +L E+P  A+IIV K + A+  R AA+RAR++TRRK V++I++LPGKLADCS
Sbjct: 359 LFSNGFDVYLMENPKVARIIVDKGILAAKARMAAKRAREMTRRKSVMEISNLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+ +  ELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  DK+L+++EI +L 
Sbjct: 419 SREAELCELFIVEGDSAGGSAKQGRSRMYQAILPIRGKILNVEKASMDKILNNEEIRSLF 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+GTG G + FD+ K RYHK+I+MTDADVDGAHIRTLLLT  +R M  L+  G++YI K
Sbjct: 479 TAMGTGFGGE-FDVAKARYHKLILMTDADVDGAHIRTLLLTLIYRYMRPLLDAGYVYIAK 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + +GK   Y+  +  L+++      +          G ++++ L         ++
Sbjct: 538 PPLYQVKQGKRAIYLDTDAELKEWQEENPNARYTIQRYKGLGEMNEDQLWET-----TMN 592

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +       +  IE   +  +   +  +     +        N 
Sbjct: 593 PENRRMLQVTVEDAIEAEAVLEMLMGDDVEPRRAFIEDNAVYVENL 638



 Score =  170 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 3/126 (2%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKGISMQR 738
            + +   +Y R   +                 K  I       L +          ++QR
Sbjct: 515 LLLTLIYRYMRPLLDAGYVYIAKPPLYQVKQGKRAIYLDTDAELKEWQEENPNARYTIQR 574

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT+NP+ R +L+V + DA +A+ +   LMGD+VEPRR FI++N++ 
Sbjct: 575 YKGLGEMNEDQLWETTMNPENRRMLQVTVEDAIEAEAVLEMLMGDDVEPRRAFIEDNAVY 634

Query: 799 S-ALDI 803
              LDI
Sbjct: 635 VENLDI 640


>gi|240145738|ref|ZP_04744339.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
 gi|257202154|gb|EEV00439.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
 gi|291536986|emb|CBL10098.1| DNA gyrase subunit B [Roseburia intestinalis M50/1]
 gi|291539810|emb|CBL12921.1| DNA gyrase subunit B [Roseburia intestinalis XB6B4]
          Length = 645

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/591 (50%), Positives = 394/591 (66%), Gaps = 5/591 (0%)

Query: 2   SDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           ++ I+N + Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY
Sbjct: 3   TEKIENPNEYGADQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGY 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+N D S TV D+GRGIP  ++ + G SA EV+ T LHAGGKF    YKVSGGL
Sbjct: 62  CKNIEVTINPDNSITVEDDGRGIPVGMNHKAGKSALEVVYTVLHAGGKFGGGGYKVSGGL 121

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS+ L + + +EG +Y  S+  G  D P+ V G+      GT+VTF P  
Sbjct: 122 HGVGASVVNALSTKLCVEVYKEGQVYFQSYHIGKPDEPVKVIGTCDSEKHGTKVTFHPDP 181

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    ++YDTL+ RLRE +FL   ++I L D R          Y GGI+ FV+YL+R 
Sbjct: 182 EIFEETVYDYDTLKQRLRETAFLTKGLRIVLTDTREESHHCHEFHYAGGIKEFVTYLNRS 241

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L    I  +G+RD + +++AM+ ND Y++    F NNI   +GGTHL+G R+ALT+ 
Sbjct: 242 KEALYPDVIYCEGTRDGVYVEVAMQHNDSYNDATYSFVNNIITPEGGTHLAGFRNALTKT 301

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
             +Y   +   K  + ++ GDD REG T+++SIK+ +P+F  QTK+KL +SE R  V+S 
Sbjct: 302 FNTYARANKILKDSEPALTGDDIREGLTAIISIKIEEPQFEGQTKQKLGNSEARGAVDSV 361

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L+ +LE++P  AK I +K L A   R+AAR+ARDLTRRK  L+  SLPGKLADCS+
Sbjct: 362 VSEQLTYFLEQNPAVAKSICEKSLLAQRAREAARKARDLTRRKTALEGTSLPGKLADCSD 421

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DPK  E+F+VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR DK+  + EI  +IT
Sbjct: 422 KDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIYGNAEIKAMIT 481

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGI +D FDI+KLRY KIIIMTDADVDGAHI TL+LTF +R MP LI  G +Y+  P
Sbjct: 482 AFGTGIHED-FDISKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPELIKQGHVYLATP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           PLY I + K++ Y  D+  L + LI                G +    L  
Sbjct: 541 PLYKIEKNKNIWYAYDDAELNNILIEIGRDGNNKIQRYKGLGEMDAEQLWE 591



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +   +++   +        + +  S    D ++      V    +    
Sbjct: 459 ILNVEKARLDKIYGNAEIKAMITAFGTGIHEDFDISKLRYDKIIIMTDADVDGAHIATLM 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRY 739
             F +    + I    +      +  +  N +         L + +  IGR G + +QRY
Sbjct: 519 LTFLYRFMPELIKQGHVYLATPPLYKIEKNKNIWYAYDDAELNNILIEIGRDGNNKIQRY 578

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSL 797
           KGLGEM+A QLWETT++P+ R L RV I + +  + D  F+ LMGD+VEPRREFI+EN+ 
Sbjct: 579 KGLGEMDAEQLWETTMDPEKRILKRVMIDEENSSEIDVTFTTLMGDKVEPRREFIEENAK 638

Query: 798 PS-ALDI 803
               LDI
Sbjct: 639 YVQNLDI 645


>gi|171780013|ref|ZP_02920917.1| hypothetical protein STRINF_01800 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281361|gb|EDT46796.1| hypothetical protein STRINF_01800 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 650

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 274/576 (47%), Positives = 385/576 (66%), Gaps = 9/576 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEENKNLAELAKEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATHIEVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + R+G I+   +  G + + L V G   +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGDT-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI ++V 
Sbjct: 179 TPDGEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEQHYHYEGGISSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +++ +K  +   PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH  G R+
Sbjct: 239 FINENKDVIFDKPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  ++   K+   ++ GDD REG T+V+S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYARQNKLLKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     +D    +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSDAFGRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D   +ELF+VEGDSAGGSAK GR RE+QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD+ K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVTKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           YI +PP+YG+  G  ++      + ++  +  ++  
Sbjct: 538 YIAQPPIYGVKVGSEIKEYIQPGANQEAELQAAIER 573



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   S+QRYKGLGEM+  QLW TT++P+ R + RV + DA++AD +F  LMGD+VEP
Sbjct: 575 SNGRSKPSVQRYKGLGEMDDHQLWATTMDPENRLMARVSVDDAAEADKIFDMLMGDKVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LDI
Sbjct: 635 RREFIEENAVYSTLDI 650


>gi|296268004|ref|YP_003650636.1| DNA gyrase subunit B [Thermobispora bispora DSM 43833]
 gi|296090791|gb|ADG86743.1| DNA gyrase, B subunit [Thermobispora bispora DSM 43833]
          Length = 647

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 281/551 (50%), Positives = 372/551 (67%), Gaps = 9/551 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA SI +L+GL+AV+KRP MYIG T GE GLHH++YE++DNA+DE+L G+ D I VTL
Sbjct: 2   SYDASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAVDEALAGHNDRIDVTL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V+D GRGIP  +   EG  A EV+ T LHAGGKF++KSY VSGGLHGVG SVV
Sbjct: 61  LADGGVRVADRGRGIPVGIVPSEGRPAVEVVFTVLHAGGKFDRKSYAVSGGLHGVGASVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L++ ++ +G+++  S++      PL   G   +D GT VTF P   IF    +N
Sbjct: 121 NALSKRLEVEVRTDGHVWRQSYVQAKPTGPLQK-GEPTDDHGTTVTFWPDETIFETTTWN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
           ++TL  R +E++FLN  + I+L D+R    + EP+ +T  Y+GG+  FV+YL+  K+P+ 
Sbjct: 180 FETLSRRFQEMAFLNKGLTITLTDERPEYINGEPKVVTYHYEGGLADFVTYLNSKKEPIH 239

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            S I  +   D IS+++AM+WN  Y E+V  F N I   +GGTH  G R+ALT  +  Y 
Sbjct: 240 GSVIYFEEHGDGISVEVAMQWNASYTESVYTFANTINTAEGGTHEEGFRAALTSVVNRYA 299

Query: 305 EKSFGSKK-DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +    K+    ++ GDD REG  +++S+K+ +P+F  QTK KL ++E +S V+   ND 
Sbjct: 300 REQRYLKEGKDDNLTGDDVREGLAAIISVKLANPQFEGQTKTKLGNTEAKSFVQKACNDH 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGKLADCSERDP 422
           L  W E +P EAK I+ K + AS  R AAR+ARDLTRRK +L+  + LPGKLADC   DP
Sbjct: 360 LRDWFERNPGEAKEIINKAIQASRARIAARQARDLTRRKSLLESGSGLPGKLADCQWSDP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           +K ELF+VEGDSAGGSAK GR    QAILP+RGKILNVE+AR DK+L + EI  LITALG
Sbjct: 420 EKCELFIVEGDSAGGSAKGGRDPRFQAILPIRGKILNVEKARIDKVLRNNEIQALITALG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG+  D FDI+KLRYHK+I+M DADVDG HI TLLLT  FR M  LI  G +Y+ +PPLY
Sbjct: 480 TGV-HDDFDISKLRYHKLILMADADVDGQHITTLLLTLLFRFMRPLIEAGHVYLAQPPLY 538

Query: 543 GITRGKSLQYV 553
            I   +  +  
Sbjct: 539 KIKWDRKGEDA 549



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMNASQLWETT+NP+TR L +V + DA+QAD+LFS LMG++VE RR+FI  N
Sbjct: 579 VQRFKGLGEMNASQLWETTMNPETRILRQVTLDDAAQADELFSVLMGEDVEARRQFIIRN 638

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 639 ARDVRFLDV 647


>gi|156744114|ref|YP_001434243.1| DNA gyrase subunit B [Roseiflexus castenholzii DSM 13941]
 gi|156235442|gb|ABU60225.1| DNA gyrase, B subunit [Roseiflexus castenholzii DSM 13941]
          Length = 653

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 281/623 (45%), Positives = 407/623 (65%), Gaps = 19/623 (3%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+      +  + YD D IQ+L+G++AV++RP MYIG TD  +GLH M+ EV+DN++DE 
Sbjct: 9   MTTEPLRSVNATGYDEDQIQVLEGMEAVRRRPGMYIGPTD-VNGLHTMVREVVDNSVDEV 67

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G A  + VT++ DGS TV+D+G GIPT  H + G+S  +V+MT LHAGGKF+ KSYKV
Sbjct: 68  MAGRATTVEVTIHEDGSVTVADDGYGIPTGPHPKLGVSTLQVVMTVLHAGGKFDNKSYKV 127

Query: 117 SGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           S GLHGVGVS VNALS+++++ +   R+G  Y   +  G+    +   G      GT   
Sbjct: 128 SSGLHGVGVSAVNALSAYMRVDVHNARDGMHYYQEYRCGVPQCEVQKVGPTT-RRGTITR 186

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FLP + I    D+N+ TL  R RE+++LN  ++   +D+R  +  EI  +++GGI ++V 
Sbjct: 187 FLPDTTIIQTLDYNFKTLAQRFREMAYLNKGLRFKFVDER--DGNEINFYFEGGIRSYVR 244

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLR 293
           +L++ K  L + P  ++ + D + +++A+++ + +  ++V  F N I   DGG H++G R
Sbjct: 245 HLNKDKNVLHKHPFYVERTIDEVMVEVALQYTESFDTDSVYAFANGINNTDGGAHVAGFR 304

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALTR I +Y       K+++ ++ GDD REG T+V+S+K+ DP+FSSQTKEKLVS    
Sbjct: 305 SALTRVINAYARSKGFLKENEGNLTGDDVREGLTAVISVKLRDPQFSSQTKEKLVSPSAT 364

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V +   D  SAWLEE+P EA+ IV+K + A+  R A ++ R+ T RK  ++  SLPGK
Sbjct: 365 GAVNTVFGDAFSAWLEENPQEARRIVEKCISAARTRIAVQKVRE-TARKSAMEGFSLPGK 423

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS+ +P ++ELF+VEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DKMLS+ E
Sbjct: 424 LADCSDTNPARTELFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKSRLDKMLSNNE 483

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +  LITA+G G+G D FD +KLRYH+II+M DADVDG+HIRTLLLTFFFR M  +I NG 
Sbjct: 484 VKALITAIGAGVG-DQFDPSKLRYHRIILMCDADVDGSHIRTLLLTFFFRYMRQIITNGH 542

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LY+ +PPLY I  GK+ +YV  +   + YL   S +E       +K V+++      ++ 
Sbjct: 543 LYLAQPPLYRIVHGKTEKYVFTDTERDQYLATLSSAER------NKAVVTRYKGLGEMNA 596

Query: 594 ALKIDKLIKDFYPNHDKTFIEQA 616
           A   +  +        +  +E A
Sbjct: 597 AQLWETTMNPLNRLLLQVTLEDA 619



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 7/206 (3%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +        +   + N E  +   +   +++   +  I       +  S     
Sbjct: 451 QGRDRRYQAIL---PLRGKILNVEKSRLDKMLSNNEVKALITAIGAGVGDQFDPSKLRYH 507

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
            ++      V    +      F F    + I +  +      +  ++    +  +     
Sbjct: 508 RIILMCDADVDGSHIRTLLLTFFFRYMRQIITNGHLYLAQPPLYRIVHGKTEKYVFTDTE 567

Query: 722 LLDTI--FSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               +   S   +    + RYKGLGEMNA+QLWETT+NP  R LL+V + DA QAD+ F+
Sbjct: 568 RDQYLATLSSAERNKAVVTRYKGLGEMNAAQLWETTMNPLNRLLLQVTLEDAQQADETFT 627

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD V PR+ FIQ ++L    LDI
Sbjct: 628 MLMGDLVPPRKRFIQTHALEVRNLDI 653


>gi|329925092|ref|ZP_08280036.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5]
 gi|328940211|gb|EGG36543.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5]
          Length = 634

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 295/620 (47%), Positives = 417/620 (67%), Gaps = 16/620 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD + IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE++ G  D I
Sbjct: 1   MNQPTYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEVVDNSIDEAMAGICDHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + ++ D S TV DNGRGIP   + +   S  EV+MT LHAGGKF    YKVSGGLHGVG
Sbjct: 60  EIIVHEDNSITVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALSS + +++KR+GNIY+  +  G+    + + G + +D GT VTFLP  +IF+ 
Sbjct: 120 VSVVNALSSKVVVQVKRDGNIYQQEYHRGVPQYDIKIIGDS-DDHGTTVTFLPDPEIFTE 178

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              ++Y TL  R+REL+FLN  + ++L D+R+         Y+GGI  +V +L+  K+ L
Sbjct: 179 TTVYDYTTLLTRIRELAFLNKGIALTLTDERTG--ASDYFKYEGGIIEYVKFLNEKKEAL 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + PI ++GSRDNI +++++++ND Y EN+  F NNI   +GGTH SG +SALTR I  Y
Sbjct: 237 HEDPIYVEGSRDNIQVEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDY 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +SEVR +VES   + 
Sbjct: 297 ARKTGLIKDNNNNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESLFAEK 356

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L+E+P  ++ I++K L AS  R+AAR+AR++TRRK  L++++LPGKLADCS +D  
Sbjct: 357 LQEFLQENPAVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDAS 416

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++LS+ EI  +ITALGT
Sbjct: 417 ISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGT 476

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  + FD++K RYHKIIIMTDADVDGAHIRTLLLTFF+R M  L+  G++YI +PPL+ 
Sbjct: 477 GI-AEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFK 535

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           I R K ++Y   E   ++ +     + +I        G ++   L          +  + 
Sbjct: 536 IERNKVIRYAGSERERDEIIKEFGENVKINVQRYKGLGEMNAGQLW---------ETTMD 586

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  IE A+++   
Sbjct: 587 PESRTMLQVTIEDAILADTL 606



 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 4/199 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +  +     + +  S      ++  
Sbjct: 438 RHFQAIL--PLRGKILNVEKARLDRILSNAEIRAIITALGTGIAEDFDLSKARYHKIIIM 495

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    K + +  I      +  +  N             + I
Sbjct: 496 TDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKIERNKVIRYAGSERERDEII 555

Query: 727 FSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
              G    I++QRYKGLGEMNA QLWETT++P++R++L+V I DA  AD LF  LMGD V
Sbjct: 556 KEFGENVKINVQRYKGLGEMNAGQLWETTMDPESRTMLQVTIEDAILADTLFDTLMGDNV 615

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRR+FIQE++     LD+
Sbjct: 616 EPRRDFIQEHAKSVRNLDV 634


>gi|18308988|ref|NP_560922.1| DNA gyrase subunit B [Clostridium perfringens str. 13]
 gi|18143663|dbj|BAB79712.1| DNA gyrase subunit B [Clostridium perfringens str. 13]
          Length = 638

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 295/619 (47%), Positives = 420/619 (67%), Gaps = 11/619 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N +YDA  IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY   
Sbjct: 3   EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCKN 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 62  IKVYIHKDNSVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS   ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF 
Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLERIGEAE-GSGTKVHFKPDHEIFE 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++++ L  RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L
Sbjct: 181 ETEYDFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVL 240

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI ++G +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y
Sbjct: 241 HDEPIYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDY 300

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             +    K+  +++ GDD REG T+V+S+K+ DP+F  QTK KL +SEVRS V+S   +G
Sbjct: 301 GRRFGHLKESDKNLSGDDIREGLTAVVSVKISDPQFEGQTKTKLGNSEVRSAVDSISGEG 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +S +LEE+P   KII++K L AS  R+AARRAR+LT RK VL+ +SLPGKLADCS +DPK
Sbjct: 361 ISTFLEENPEVGKIIIEKALLASRAREAARRARELT-RKSVLERSSLPGKLADCSSKDPK 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L S  I +++TA+G 
Sbjct: 420 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 479

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG   FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY 
Sbjct: 480 GIG-PEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYK 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I++GK  +Y   + + ++ +      +        KG+         ++     +  +  
Sbjct: 539 ISKGKQERYAYSDAAADEIIEEFGGKDSSVNVQRYKGL-------GEMNAGQLWETTMDP 591

Query: 604 FYPNHDKTFIEQAVISGVF 622
                 +  IE A+++   
Sbjct: 592 ESRILLRADIEDAMVADEI 610



 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 5/128 (3%)

Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISM 736
            + +F  +Y R    +         L  I  G + +     +  D I     G+   +++
Sbjct: 511 LLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYSDAAADEIIEEFGGKDSSVNV 570

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P++R LLR  I DA  AD++F+ LMGD+VEPRREFIQ+N+
Sbjct: 571 QRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEIFTILMGDKVEPRREFIQKNA 630

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 631 KNVSNLDI 638


>gi|312863428|ref|ZP_07723666.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396]
 gi|322516316|ref|ZP_08069243.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           vestibularis ATCC 49124]
 gi|311100964|gb|EFQ59169.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396]
 gi|322125185|gb|EFX96572.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           vestibularis ATCC 49124]
          Length = 650

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/628 (44%), Positives = 401/628 (63%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D ++N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTDELKNLEEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATHIKVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +++ + G+I+   +  G++   L V G      GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVADLAVIGETE-KHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF     F++  L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI ++V 
Sbjct: 179 TPDPEIFQETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLEQEKHYHYEGGITSYVK 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y++ +K  +   PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH  G R+
Sbjct: 239 YINENKDVIFDEPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  ++   K+   ++ GDD REG T+++S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++ LS +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  + + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGSE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++     +   +      ++ E      SK  + +      +DD 
Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGANQEEKLRVALENYSVGRSKPTVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 59/74 (79%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           GR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD+VEPRR
Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKIFDMLMGDKVEPRR 636

Query: 790 EFIQENSLPSALDI 803
           EFI+EN++ S LDI
Sbjct: 637 EFIEENAVYSTLDI 650


>gi|295094327|emb|CBK83418.1| DNA gyrase subunit B [Coprococcus sp. ART55/1]
          Length = 639

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 294/587 (50%), Positives = 401/587 (68%), Gaps = 4/587 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++N +Y A+ IQ+L+GL+AV+KRP MYIG T   +GLHH++YE++DN++DE+L GY   I
Sbjct: 1   MENDNYGAEQIQVLEGLEAVRKRPGMYIGSTSS-TGLHHLVYEIVDNSVDEALAGYCTHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +N D S TV D+GRGIP  +HK++GI A EV+ T LHAGGKF    YKVSGGLHGVG
Sbjct: 60  QVYINEDNSITVVDDGRGIPVGIHKKQGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183
            SVVNALS+WL++ I R+G +Y+  +  G +   L V G A    +GT+VTFLP   IF 
Sbjct: 120 ASVVNALSTWLEVEITRDGKVYKQRYEKGKVMYKLQVIGEAPEGVSGTKVTFLPDHTIFE 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              ++YD L++RLRE++FL   ++ISL DKR    +  +  Y+GGI+ FV+YL+RH+ PL
Sbjct: 180 DNIYDYDILRNRLREMAFLTKGLKISLTDKRLIPEKVRSFHYEGGIKEFVTYLNRHRDPL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I  +G RD IS+++A++ ND Y+E+   F NNI   +GGTHL+G +SA+T+    Y
Sbjct: 240 YNEVIYCEGVRDGISVEVALQHNDSYNESTYSFVNNINTPEGGTHLTGFKSAITKVFNDY 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K+   ++ GDD REG  +++SIK+ DP+F  QTK+KL +SE R  VES V + 
Sbjct: 300 ARKNNIIKEKDDNLSGDDLREGLAAIVSIKISDPQFEGQTKQKLGNSEARPAVESVVTEQ 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +LE++P  AKIIV K   A   R AAR+ARD+ R+  + D  +LPGKLADCS++DPK
Sbjct: 360 LTYYLEQNPQIAKIIVNKAAVAQRARIAARKARDVARKANLSDNMALPGKLADCSDKDPK 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR D++L ++EI  +ITA GT
Sbjct: 420 NCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARIDRILGNEEIKAMITAFGT 479

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI ++ F+I KLRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI  G +Y+ +PPLY 
Sbjct: 480 GIHEN-FNIEKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQPPLYK 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + K + Y   ++ L   L      +          G +    L  
Sbjct: 539 LEKNKKVWYAYSDDELNSILDEVGRDQNNKIQRYKGLGEMDAEQLWE 585



 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 31/247 (12%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
               +   + +  I + D         +                +E+A I  +   E  +
Sbjct: 412 DCSDKDPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARIDRILGNEEIK 471

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
            +  +  + +    N    +  K          I++            L  +  + F   
Sbjct: 472 AMITAFGTGIHENFNIEKLRYNKI---------IIMTDADVDGAHIATLLLTFFYRFMPD 522

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMN 746
             R     + +     L  +    K+        L++I     +  +  +QRYKGLGEM+
Sbjct: 523 LIRKGHVYLAQ---PPLYKLEKNKKVWYAYSDDELNSILDEVGRDQNNKIQRYKGLGEMD 579

Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADD---------LFSRLMGDEVEPRREFIQENSL 797
           A QLWETT++P+ R LLRV       A D          F+ LMGD+VEPRREFI+ N+ 
Sbjct: 580 AEQLWETTMDPEKRILLRV-------AIDDDDESEIDMTFNVLMGDKVEPRREFIETNAK 632

Query: 798 PS-ALDI 803
               LDI
Sbjct: 633 YVKNLDI 639


>gi|148654235|ref|YP_001274440.1| DNA gyrase subunit B [Roseiflexus sp. RS-1]
 gi|148566345|gb|ABQ88490.1| DNA gyrase subunit B [Roseiflexus sp. RS-1]
          Length = 645

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 406/623 (65%), Gaps = 19/623 (3%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+      ++ + YD + IQ+L+G++AV++RP MYIG TD  +GLH M+ EV+DN++DE 
Sbjct: 1   MTTEPLQPVEATGYDENQIQVLEGMEAVRRRPGMYIGPTD-VNGLHTMVREVVDNSVDEV 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G A  + VT++ DGS TV+D+G GIPT  H + G+S  +V+MT LHAGGKF+ KSYKV
Sbjct: 60  MAGRATTVEVTIHRDGSVTVADDGYGIPTGPHPKLGVSTLQVVMTVLHAGGKFDNKSYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           S GLHGVGVS VNALS+++++ +   R+G  Y   +  G+    +   G      GT   
Sbjct: 120 SSGLHGVGVSAVNALSAYMRVDVHNARDGMHYFQEYRCGVPQCEVQKVGPTT-RRGTITR 178

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FLP + I    D+N+ TL  R RE+++LN  ++   +D+R  +  E+  +++GGI ++V 
Sbjct: 179 FLPDTTIIQTLDYNFKTLAQRFREMAYLNKGLRFKFVDER--DGNEVNFYFEGGIRSYVR 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLR 293
           +L++ +  L + P  ++   D++ +++A+++ + +  ++V  F N I   DGG H++G R
Sbjct: 237 HLNKDRNVLHKQPFYVERIVDDVMVEVALQYTESFDTDSVYAFANGINNTDGGAHVAGFR 296

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALTR I +Y       K+++ ++ GDD REG T+V+S+K+ DP+FSSQTKEKLVS    
Sbjct: 297 SALTRVINAYARSKGLLKENEGNLTGDDVREGLTAVISVKLRDPQFSSQTKEKLVSPAAS 356

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V +   D  SAWLEE+P EA+ I++K + A+  R A ++ R+ T RK  ++  SLPGK
Sbjct: 357 GAVNTVFGDAFSAWLEENPQEARRIIEKCIAAARTRIAVQKVRE-TARKSAMEGFSLPGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS+ +P ++ELF+VEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DKMLS+ E
Sbjct: 416 LADCSDTNPARTELFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKSRLDKMLSNNE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +  LITA+G G+G D FD  KLRYH+II+M DADVDG+HIRTLLLTFFFR M  +I NG 
Sbjct: 476 VKALITAIGAGVG-DQFDPAKLRYHRIILMCDADVDGSHIRTLLLTFFFRYMRQIITNGH 534

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LY+ +PPLY I  GK+ +YV  +   + YL   S SE       +K  I++      ++ 
Sbjct: 535 LYLAQPPLYRIVHGKTEKYVFTDAERDQYLATLSSSER------NKATITRYKGLGEMNA 588

Query: 594 ALKIDKLIKDFYPNHDKTFIEQA 616
           A   +  +        +  +E A
Sbjct: 589 AQLWETTMNPLNRLLLQVTLEDA 611



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL---LDTIF 727
           V    +      F F    + I +  +      +  ++    +  +         L T+ 
Sbjct: 509 VDGSHIRTLLLTFFFRYMRQIITNGHLYLAQPPLYRIVHGKTEKYVFTDAERDQYLATLS 568

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S  R   ++ RYKGLGEMNA+QLWETT+NP  R LL+V + DA QAD+ F+ LMGD V P
Sbjct: 569 SSERNKATITRYKGLGEMNAAQLWETTMNPLNRLLLQVTLEDAQQADETFTMLMGDLVPP 628

Query: 788 RREFIQENSLPS-ALDI 803
           R+ FIQ ++L    LDI
Sbjct: 629 RKRFIQTHALEVRNLDI 645


>gi|320547135|ref|ZP_08041431.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           equinus ATCC 9812]
 gi|320448261|gb|EFW89008.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           equinus ATCC 9812]
          Length = 650

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 275/576 (47%), Positives = 387/576 (67%), Gaps = 9/576 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEENKNLAELAKEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATHIEVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + R+G I+   +  G + + L V G   +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGDT-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI ++V 
Sbjct: 179 TPDGEIFTETIVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEQHYHYEGGISSYVQ 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +++ +K  +  +PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH  G R+
Sbjct: 239 FINENKDVIFDTPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  ++   K+   ++ GDD REG T+V+S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     +D  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSDAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D   +ELF+VEGDSAGGSAK GR RE+QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDVTMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD+ K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVTKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           YI +PP+YG+  G  ++      + ++  +  ++  
Sbjct: 538 YIAQPPIYGVKVGSEIKEYIQPGANQESELQAAIER 573



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   S+QRYKGLGEM+  QLW TT++P+ R + RV + DA++AD +F  LMGD+VEP
Sbjct: 575 SNGRSKPSVQRYKGLGEMDDHQLWATTMDPENRLMARVSVDDAAEADKIFDMLMGDKVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LDI
Sbjct: 635 RREFIEENAVYSTLDI 650


>gi|322385201|ref|ZP_08058848.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           cristatus ATCC 51100]
 gi|321270825|gb|EFX53738.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           cristatus ATCC 51100]
          Length = 649

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/627 (44%), Positives = 410/627 (65%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFATHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGQVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  G++Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++      + ++  +  +L         SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYIQPGANQEEELQAALEH--YSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    +   I  G   +     + L+  +S GR   ++QRYKGLGEM+  QLWETT+NP+
Sbjct: 547 KVGSEVKEYIQPGANQE-EELQAALEH-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 604

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRR+FI++N++ S LD+
Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRRDFIEKNAVYSTLDV 649


>gi|312864604|ref|ZP_07724835.1| DNA gyrase, B subunit [Streptococcus downei F0415]
 gi|311099731|gb|EFQ57944.1| DNA gyrase, B subunit [Streptococcus downei F0415]
          Length = 650

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 280/628 (44%), Positives = 404/628 (64%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEENKNREDLAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASHIEVFIEEDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L++++ + G I+   +  G++   L V G   + TGT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTSLEVKVHKNGKIHFQEYKRGLVVADLKVIGDT-DKTGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR  + +     Y+GGI ++V 
Sbjct: 179 TPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISISDKREGKEQSQVYHYEGGIVSYVD 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K+ L ++PI   G  D IS+++AM++   YHENVL F NNI   +GGTH  G R+
Sbjct: 239 YLNENKEVLFENPIYTDGEMDGISVEVAMQYTGTYHENVLSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  ++   K+   ++ G+D REG T+++S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYARQNKLLKEKDDNLSGEDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D  ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L++ EI
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANDEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G + FD++K RY K++IMTDADVDG+HIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYQKLVIMTDADVDGSHIRTLLLTLFYRYMRPVVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++     +   D       + E      SK  + +      +DD 
Sbjct: 538 YIAQPPIYGVKVGSEVKEYI--QPGADQETKLQEALERYTQGRSKPSVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                 +   +    +  ++ A  +   
Sbjct: 596 QLWKTTMDPEHRLMARVSVDDAAEADKI 623



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 105/270 (38%), Gaps = 15/270 (5%)

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF--CDSKGVISKNDLRNFIDD 593
           I       +TR KS   + +         +   S+        DS G  +K+        
Sbjct: 394 IAAKRAREVTRKKSGLEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQA 453

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L I   I +         +    I  +F             SK   +   I   ++   
Sbjct: 454 ILPIRGKILNVEKASMDKILANDEIRSLFTAMGTGFGAEFDVSKARYQKLVIMTDADVDG 513

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                    L  R  R V E            G  Y         +    +   I  G  
Sbjct: 514 SHIRTLLLTLFYRYMRPVVE-----------AGYVYIAQPPIYGVKVGSEVKEYIQPGAD 562

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            +       L+  ++ GR   S+QRYKGLGEM+  QLW+TT++P+ R + RV + DA++A
Sbjct: 563 QETK-LQEALER-YTQGRSKPSVQRYKGLGEMDDHQLWKTTMDPEHRLMARVSVDDAAEA 620

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D +F  LMGD+V PRREFI+EN++ S LDI
Sbjct: 621 DKIFDMLMGDQVGPRREFIEENAVYSTLDI 650


>gi|163814983|ref|ZP_02206370.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC 27759]
 gi|158449666|gb|EDP26661.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC 27759]
          Length = 639

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 296/587 (50%), Positives = 400/587 (68%), Gaps = 4/587 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++N +Y A+ IQ+L+GL+AV+KRP MYIG T   +GLHH++YE++DN++DE+L GY   I
Sbjct: 1   MENDNYGAEQIQVLEGLEAVRKRPGMYIGSTSS-TGLHHLVYEIVDNSVDEALAGYCTHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +N D S TV D+GRGIP  +HK++GI A EV+ T LHAGGKF    YKVSGGLHGVG
Sbjct: 60  QVYINEDNSITVVDDGRGIPVGIHKKQGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183
            SVVNALS+WL++ I R G IY+  +  G +   L V G A    +GT+VTFLP   IF 
Sbjct: 120 ASVVNALSTWLEVEITRNGKIYKQRYEKGKVMYKLQVIGDAPEGVSGTKVTFLPDHTIFE 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              ++YD L++RLRE++FL   ++ISL DKR    +  +  Y+GGI+ FVSYL+RH+ PL
Sbjct: 180 DNVYDYDILRNRLREMAFLTKGLKISLTDKRITPEKVRSFHYEGGIKEFVSYLNRHRDPL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I  +G RD IS+++A++ ND Y+E+   F NNI   +GGTHL+G +SA+T+    Y
Sbjct: 240 YNEVIYCEGMRDGISVEVALQHNDSYNESTYSFVNNINTPEGGTHLTGFKSAITKVFNDY 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K+   ++ GDD REG  +++SIK+ DP+F  QTK+KL +SE R  VES V + 
Sbjct: 300 ARKNNIIKEKDDNLSGDDLREGLAAIVSIKISDPQFEGQTKQKLGNSEARPAVESVVTEQ 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +LE++P  AKIIV K   A   R AAR+ARD+ R+  + D  +LPGKLADCS++DPK
Sbjct: 360 LTYYLEQNPQIAKIIVNKAAVAQRARIAARKARDVARKANLSDNMALPGKLADCSDKDPK 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR D++L ++EI  +ITA GT
Sbjct: 420 NCEIYIVEGDSAGGSAKTARSRSTQAILPLRGKILNVEKARIDRILGNEEIKAMITAFGT 479

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI ++ F+I KLRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI  G +Y+ +PPLY 
Sbjct: 480 GIHEN-FNIEKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQPPLYK 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + K + Y   ++ L   L      +          G +    L  
Sbjct: 539 LEKNKKVWYAYSDDELNSILDEVGRDQNNKIQRYKGLGEMDAEQLWE 585



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 92/247 (37%), Gaps = 31/247 (12%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
               +   + +  I + D         +                +E+A I  +   E  +
Sbjct: 412 DCSDKDPKNCEIYIVEGDSAGGSAKTARSRSTQAILPLRGKILNVEKARIDRILGNEEIK 471

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
            +  +  + +    N    +  K          I++            L  +  + F   
Sbjct: 472 AMITAFGTGIHENFNIEKLRYNKI---------IIMTDADVDGAHIATLLLTFFYRFMPD 522

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMN 746
             R     + +     L  +    K+        L++I     +  +  +QRYKGLGEM+
Sbjct: 523 LIRKGHVYLAQ---PPLYKLEKNKKVWYAYSDDELNSILDEVGRDQNNKIQRYKGLGEMD 579

Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADD---------LFSRLMGDEVEPRREFIQENSL 797
           A QLWETT++P+ R LLRV       A D          F+ LMGD+VEPRREFI+ N+ 
Sbjct: 580 AEQLWETTMDPERRILLRV-------AIDDDDESEIDMTFNVLMGDKVEPRREFIETNAK 632

Query: 798 PS-ALDI 803
               LD+
Sbjct: 633 YVKNLDV 639


>gi|157151219|ref|YP_001450712.1| DNA gyrase subunit B [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157076013|gb|ABV10696.1| DNA gyrase, B subunit [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 649

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/627 (44%), Positives = 409/627 (65%), Gaps = 10/627 (1%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q    +  YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQSQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +++ + G I+   +  G +   L V G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVKVYKNGQIHFQEYTRGQVVADLKVIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  + IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRIQELAFLNRGLSISITDKRDGMEQSKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K+ +  +PI   G  ++I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKEVIFDNPIYTDGEMEDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNNPVETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FDI+K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++Y
Sbjct: 479 SLFTAMGTGFGAD-FDISKCRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++      + ++  + ++L         SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYIQPGADQEIKLQEAL--ARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMDPEHRLMARVSVDDAAEADKI 622



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    +   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 547 KVGSEVKEYIQPGADQEIK-LQEALAR-YSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 604

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 649


>gi|78780112|ref|YP_398224.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312]
 gi|78713611|gb|ABB50788.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312]
          Length = 655

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/638 (43%), Positives = 402/638 (63%), Gaps = 19/638 (2%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+    N  ++ Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+
Sbjct: 1   MSEDKRSNKISNEYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+ D I + L  DGS  +SDNGRGIPTD+H   G SA E ++T LHAGGKF    YKV
Sbjct: 60  LAGHCDHIEIVLQSDGSALISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVT 174
           SGGLHGVG+SVVNALS W+ + + R+G+ +   F  G+  N L            GT + 
Sbjct: 120 SGGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGVSQNVLQSKKQTKKPFKKGTTIC 179

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGI 229
           F P   IFS   +F Y  L  RLREL++LN  V+I   D+R+       +E    Y+GGI
Sbjct: 180 FKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNKLSDGSFKEEIYLYQGGI 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288
           + +V Y++  K+ +    I +   ++N+ ++ A++W  D Y +N+L F NNI   DGGTH
Sbjct: 240 KEYVQYMNAEKEAIHPDIIYVDSQKENVYVEAALQWCSDVYSDNILGFANNIRTIDGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           + GL++ LTR   +  +K    K  ++++ G++ REG T VLS+K+PDP F  QTK KL 
Sbjct: 300 IEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++EVR +V+S + + L+ ++E +P    ++++K + +    +AARRAR+L RRK VL+ +
Sbjct: 360 NTEVRGIVDSLIGEALTKFMEFNPGILDLVLEKAIQSFNAAEAARRARELVRRKSVLESS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILN+E+    K+
Sbjct: 420 TLPGKLADCSSRDPAESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDTKI 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + EI +LITALG GI  + FD++ LRYH+++IMTDADVDGAHIRTLLLTFF+R    L
Sbjct: 480 YKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQREL 539

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +  G++YI  PPLY + RGK+ +Y  +E  L+D + +   +           G +    L
Sbjct: 540 VEKGYIYIACPPLYKVERGKNHKYCYNENQLKDTIGSFGENANYNIQRFKGLGEMMPKQL 599

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
            +       ++   +       +  +E   I  +   +
Sbjct: 600 WDT-----TMNPQTRMMKRVEIEDALEADRIFNILMGD 632



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 6/129 (4%)

Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQ 737
            + +F  +Y+R    +         L  +  G   K       L DTI S G     ++Q
Sbjct: 527 LLLTFFYRYQRELVEKGYIYIACPPLYKVERGKNHKYCYNENQLKDTIGSFGENANYNIQ 586

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           R+KGLGEM   QLW+TT+NP TR + RV+I DA +AD +F+ LMGD+V PRREFI+ +S 
Sbjct: 587 RFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIFNILMGDKVAPRREFIETHSS 646

Query: 798 P---SALDI 803
               + LDI
Sbjct: 647 KLDMATLDI 655


>gi|111020663|ref|YP_703635.1| DNA gyrase subunit B [Rhodococcus jostii RHA1]
 gi|110820193|gb|ABG95477.1| DNA topoisomerase subunit B [Rhodococcus jostii RHA1]
          Length = 696

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 266/609 (43%), Positives = 372/609 (61%), Gaps = 37/609 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            +  +  Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ G+A 
Sbjct: 24  KSTSSKDYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGHAT 82

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + +TL  DG   V D+GRGIP  +H   G+   EV++T+LHAGGKF+  SY VSGGLHG
Sbjct: 83  KVEITLLEDGGVRVVDDGRGIPVGMHAS-GVPTVEVVLTQLHAGGKFDSDSYAVSGGLHG 141

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TGT VTF    +IF
Sbjct: 142 VGISVVNALSTRLDVDIKRDGFQWHQTYTDSKP-GEL-VKGEATKETGTTVTFWADPNIF 199

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
               ++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 200 ETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTAEDESAEA 259

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                 + +     Y GG+E +V +++R K+P+  S +          +++AM+WN GY 
Sbjct: 260 EAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHELEIAMQWNSGYS 319

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  F N I   +GGTH  G RSALT  +  Y       K+    + GDD REG  +++
Sbjct: 320 ESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIREGLAAII 379

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK IV K + ++  R 
Sbjct: 380 SVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAVSSAQARV 439

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAI
Sbjct: 440 AARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMYQAI 499

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++M DADVDG
Sbjct: 500 LPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDG 558

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            HI TLLLT  FR M  L+ +G +Y+ +PPLY +   +S       +   D L+   L  
Sbjct: 559 QHIATLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRSEPEFAYSDRERDVLVKAGLES 618

Query: 571 EIELFCDSK 579
             ++  D  
Sbjct: 619 GKKINKDDG 627



 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           L+      G+K I+    +QRYKGLGEMNA +LWETT++P  R L  V + DA+ AD+LF
Sbjct: 611 LVKAGLESGKK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDDAAAADELF 669

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 670 SVLMGEDVEARRSFITRNAKDVRFLDV 696


>gi|228477165|ref|ZP_04061803.1| DNA gyrase, B subunit [Streptococcus salivarius SK126]
 gi|228251184|gb|EEK10355.1| DNA gyrase, B subunit [Streptococcus salivarius SK126]
          Length = 650

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 279/628 (44%), Positives = 400/628 (63%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D ++N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTDELKNLEEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +++ + G+I+   +  G++   L V G      GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVADLAVIGETE-KHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF     F++  L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI ++V 
Sbjct: 179 TPDPEIFQETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLKQEKHYHYEGGITSYVK 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y++ +K  +   PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH  G R+
Sbjct: 239 YINENKDVIFDEPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  ++   K+   ++ GDD REG T+++S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++ LS +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  + + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++     +   D       + E      SK  + +      +DD 
Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGADQEDKLRAALENYSVGRSKPTVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 59/74 (79%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           GR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD+VEPRR
Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKIFDMLMGDKVEPRR 636

Query: 790 EFIQENSLPSALDI 803
           EFI+EN++ S LDI
Sbjct: 637 EFIEENAVYSTLDI 650


>gi|256374166|ref|YP_003097826.1| DNA gyrase, B subunit [Actinosynnema mirum DSM 43827]
 gi|255918469|gb|ACU33980.1| DNA gyrase, B subunit [Actinosynnema mirum DSM 43827]
          Length = 657

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 265/599 (44%), Positives = 377/599 (62%), Gaps = 20/599 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I EV+DN++DE++ GY
Sbjct: 1   MA--AQKKDYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIQEVVDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + VTL  +G   V D+GRGIP DLH  EG    EV++T+LHAGGKF+  SY VSGGL
Sbjct: 58  ASKVVVTLLANGGVRVVDDGRGIPVDLHPVEGKPTLEVVLTKLHAGGKFDSDSYAVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ + + +KR+G  +   F      + L   G   ++TGT +TF     
Sbjct: 118 HGVGISVVNALSTAVDVEVKRQGFTWNQRFEASKPAHELQR-GVPTSETGTTITFWADPT 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--------------RSPEPREITMFYK 226
           IF   D+N +T+  RL+E++FLN  + I L D+                 + RE    Y 
Sbjct: 177 IFETTDYNIETISRRLQEMAFLNKGLSIVLRDERVAEEGAEEADAEGHVAKVRERVFHYP 236

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+E FV +L+  ++ + Q  +  +   D++ +++AM+WN GY  +V  F N I   +GG
Sbjct: 237 GGLEDFVRHLNHTREAVHQKVVSFEAKGDDLEVEVAMQWNTGYTPSVYTFANTINTHEGG 296

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALTR +  Y       K+   ++ GDD REG  +++S+K+ +P+F  QTK K
Sbjct: 297 THEEGFRAALTRVVNEYARDKKLIKEKDANLTGDDIREGLAAIISVKLKEPQFEGQTKTK 356

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +SE +S V+   N+ L+ W E HP EAK I+ K + +S  R AAR+AR+L RRKG LD
Sbjct: 357 LGNSEAKSFVQKSTNEHLADWFERHPNEAKTIITKAVSSSQARIAARKARELVRRKGALD 416

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I  LPGKL DC   +P++ E+++VEGDSAGGSAK+GR    QAILP+RGKI+NVE+AR D
Sbjct: 417 IGGLPGKLKDCRSSNPEECEVYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARID 476

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L + E+ ++ITA+GTGI  D FD++KLRYHK+++M DADVDG HIRTLLLT  FR M 
Sbjct: 477 RVLKNTEVQSIITAMGTGI-HDEFDVSKLRYHKVVLMADADVDGQHIRTLLLTLLFRFMR 535

Query: 527 SLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            L+ +G +Y+ +PPLY I   ++  +Y   +   +  +     + +     D+      
Sbjct: 536 PLLEHGHVYLAQPPLYKIKWLRAEPEYAYSDRERDGLIEQGLAAGKKIGKDDNIQRYKG 594



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 4/86 (4%)

Query: 722 LLDTIFSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L++   + G+K     ++QRYKGLGEMNA +LWETT++P  R LL+V + DA+ AD+LFS
Sbjct: 572 LIEQGLAAGKKIGKDDNIQRYKGLGEMNAEELWETTMDPANRVLLQVTMDDAAAADELFS 631

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMG++VE RR FI  N+     LD+
Sbjct: 632 VLMGEDVEARRSFITRNAKGVRFLDV 657


>gi|219851686|ref|YP_002466118.1| DNA gyrase, B subunit [Methanosphaerula palustris E1-9c]
 gi|219545945|gb|ACL16395.1| DNA gyrase, B subunit [Methanosphaerula palustris E1-9c]
          Length = 665

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 290/651 (44%), Positives = 400/651 (61%), Gaps = 43/651 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     SYDA  I +L+GL  V++RP+MYIG TD   GLHH++YEV+DNA+DE+L G+
Sbjct: 1   MTE-----SYDASHITVLEGLQPVRERPAMYIGSTD-TRGLHHLVYEVVDNAVDEALAGF 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D+I++T+N DGSCTV DNGRGIP D  ++ G SA E ++T LHAGGKF++ +Y+VSGGL
Sbjct: 55  CDLISITINRDGSCTVDDNGRGIPVDKMQKNGKSALETVLTILHAGGKFDKNTYQVSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--------------- 165
           HGVGVSVVNALS  L   + R+GN Y M F  G + +PL V                   
Sbjct: 115 HGVGVSVVNALSVSLVADVFRDGNRYRMEFAQGKVVSPLSVHKETLSELLERYRRRYRSE 174

Query: 166 ----------------GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
                              +GT +TF P   IF    F+YD L HRLRE++FLN  + I 
Sbjct: 175 PPREVETKEALFADEGAKLSGTIITFQPDDSIFETVTFDYDVLVHRLREMAFLNRGITIR 234

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI--RIQGSRDNISIDLAMRWND 267
           + D RS +       Y GG+  FV YL   ++ L    I    +   + + +++A+++  
Sbjct: 235 ITDLRSGDK--DEFHYDGGLREFVQYLIDGREVLHPDVIDLSRKDEENKLEVEVALQYTQ 292

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y E V  F N++  ++GGTHL G RSA+TR I +   K+   K +  ++ G+D REG T
Sbjct: 293 SYTETVYTFVNSVNTREGGTHLEGFRSAITRAINNSARKANLIKNNTLTLRGEDVREGLT 352

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+SIK+ +P+F  QTK +L +S VR +V+S V   LS + EE+P     I +K   A+ 
Sbjct: 353 AVISIKLANPQFEGQTKMRLGNSNVRGIVDSLVYQSLSEYFEENPKSIAAIFEKATVAAQ 412

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR AR+L RRK  L+ + LPGKLADCSERDP KSE+++VEGDSAGGSAKQGR+R  
Sbjct: 413 AREAARNARELARRKSTLESSGLPGKLADCSERDPAKSEVYIVEGDSAGGSAKQGRNRRF 472

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGKILNVE+A   KM+ S EI  LI+A+G GIG D  D N+ RYH I++MTDAD
Sbjct: 473 QAILPLRGKILNVEKATQHKMIKSVEIQVLISAIGAGIG-DRMDANRARYHHIVLMTDAD 531

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDGAHI+TLLLTFF+R MP LI  G++YI +PPL+ I +GK ++YV  EE ++       
Sbjct: 532 VDGAHIQTLLLTFFYRYMPELIERGYVYIAQPPLFRIAKGKQVRYVYREEEMQQISAEFG 591

Query: 568 LSEEIELFCDSKGVISKNDLRN-FIDDALKIDKLIKDFYPNHDKTFIEQAV 617
                       G ++ + L    ++   ++ K I+     +     E+ +
Sbjct: 592 DKGVTVQRYKGLGEMNADQLWETTMNPDTRVLKQIRIEDAGYANEIFEKLM 642



 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 3/126 (2%)

Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQR 738
            + +F  +Y      R         L  I  G +++       +  I +  G KG+++QR
Sbjct: 540 LLLTFFYRYMPELIERGYVYIAQPPLFRIAKGKQVRYVYREEEMQQISAEFGDKGVTVQR 599

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMNA QLWETT+NPDTR L +++I DA  A+++F +LMG++V  R+ FI  ++  
Sbjct: 600 YKGLGEMNADQLWETTMNPDTRVLKQIRIEDAGYANEIFEKLMGEDVSARKNFILRHAKE 659

Query: 799 S-ALDI 803
              LDI
Sbjct: 660 VTNLDI 665


>gi|254520691|ref|ZP_05132747.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA]
 gi|226914440|gb|EEH99641.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA]
          Length = 637

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 302/588 (51%), Positives = 406/588 (69%), Gaps = 7/588 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N SYD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L G+   
Sbjct: 3   EKSNQSYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGFCTE 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I+V +N D S TV DNGRG+PT +H + G S  EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 62  ISVAINEDNSITVIDNGRGMPTGIHPKMGKSTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS W ++ + REG+I++  +  G     L   G    + GT+V+F P ++IF 
Sbjct: 122 GASVVNALSEWCEVTVSREGDIWQQKYSRGNAVTDLSKIGKTE-EHGTKVSFKPDTEIFE 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             ++++D L +RLREL+FLN  ++I L D R  E +     Y+GGI+ FVSYL R+K+ L
Sbjct: 181 ETEYDFDILANRLRELAFLNKGIKIILSDAR-EEGKTEVYHYEGGIKEFVSYLSRNKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q PI I+G +D I +++++++ND Y EN+  F NNI   +GGTHLSG ++ALTR I  Y
Sbjct: 240 HQDPIYIEGEKDGIIVEISLQYNDSYTENLYSFANNIDTIEGGTHLSGFKTALTRVINDY 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K    K++ +++ GDD REG T+V+S+K+ +P+F  QTK KL +SEVR VV+S V +G
Sbjct: 300 GKKFNHLKENDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRGVVDSIVGEG 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +S +LEE+P   KII+ K L A+  RDAAR+AR+LT RK VL+ +SLPGKLADCS +DP 
Sbjct: 360 VSIFLEENPGIGKIIIDKALMAARARDAARKARELT-RKSVLERSSLPGKLADCSSKDPL 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+++VEGDSAGGSAKQGR+R  QAILPLRGKILNVE+ R D++L++  I +++TA G 
Sbjct: 419 ECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKQRLDRILTADSIKSMVTAFGA 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG D FD  KLRY++IIIMTDADVDGAHIRTLLLTFFFR M  L+  G +YI +PPLY 
Sbjct: 479 GIG-DDFDEEKLRYNRIIIMTDADVDGAHIRTLLLTFFFRYMRGLLDGGHVYIAQPPLYQ 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRN 589
           + + K   Y   +  LE  L       +          G ++ N L +
Sbjct: 538 VKKNKKEYYAYSDAELEKLLSEIGGKDNSTNIQRYKGLGEMNANQLWD 585



 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  A  + + +          +       + ++      V    +    
Sbjct: 452 ILNVEKQRLDRILTADSIKSMVTAFGAGIGDDFDEEKLRYNRIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F F      +    +      +  +  N  +        L   +  IG K    ++QR
Sbjct: 512 LTFFFRYMRGLLDGGHVYIAQPPLYQVKKNKKEYYAYSDAELEKLLSEIGGKDNSTNIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMNA+QLW+TT++P+ R LL+  + DA  AD++F+ LMGD+VEPRREFIQ+N+  
Sbjct: 572 YKGLGEMNANQLWDTTMDPEKRVLLKATVEDAIAADEIFTILMGDKVEPRREFIQKNAKK 631

Query: 799 S-ALDI 803
              LD+
Sbjct: 632 VSNLDV 637


>gi|289642470|ref|ZP_06474615.1| DNA gyrase, B subunit [Frankia symbiont of Datisca glomerata]
 gi|289507729|gb|EFD28683.1| DNA gyrase, B subunit [Frankia symbiont of Datisca glomerata]
          Length = 644

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 291/583 (49%), Positives = 374/583 (64%), Gaps = 10/583 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YDA SI++L+GLDAV+KRP MYIG T GE GLHH++YEV+DNA+DE+L GY D I VTL
Sbjct: 2   AYDASSIKVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEALAGYCDTIGVTL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   VSDNGRGIP   H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVSVV
Sbjct: 61  LADGGVRVSDNGRGIPVGEHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L++ I+REG  +   + N     PL   G+    TGT VTF     IF   D+ 
Sbjct: 121 NALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFETTDYK 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y+TL  RL+E++FLN  + ISL D+R  EP E+T  Y GG+  FV +L+  K P+ ++ I
Sbjct: 180 YETLSRRLQEMAFLNKGLTISLRDERPEEPLEVTYRYAGGLVDFVEHLNASKDPIHKTVI 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            +      I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT  + +Y +   
Sbjct: 240 SLDSKGTGIEAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKDQN 299

Query: 309 GSKKDKRSVI-------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
             K  K +         GDD REG T+++S+K+  P+F  QTK KL +SE +  ++    
Sbjct: 300 LLKPPKSNGKNADERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGNSEAKRFIQEMCY 359

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             L  WLE + +EA+ IV K LDA   R AAR ARDLTRRKG+L    LPGKLADC   D
Sbjct: 360 SALKDWLEANRVEARAIVSKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLADCQYTD 419

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P++ EL++VEGDSAGGSAK GR  + QAILPLRGKILNVE+AR D++L + E+  LI AL
Sbjct: 420 PERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQALIQAL 479

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GI  D FD +KLRYHKI++M DADVDG HIRTLLLT  FR M  L+  G++++ +PPL
Sbjct: 480 GCGI-HDDFDASKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGYVFLAQPPL 538

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           Y I  G+        +   D LI   +    +L  D+      
Sbjct: 539 YKIKWGREDWQYAYSDRERDGLIEHGIEAGRKLPKDAIQRFKG 581



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 62/85 (72%), Gaps = 3/85 (3%)

Query: 722 LLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           L++     GRK    ++QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS 
Sbjct: 560 LIEHGIEAGRKLPKDAIQRFKGLGEMNATELWDTTMDPDRRILLQVTLDDAAVADELFSV 619

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
           LMG++V+ RR FIQ N+     LDI
Sbjct: 620 LMGEDVDARRSFIQRNAKDVRFLDI 644


>gi|116511733|ref|YP_808949.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11]
 gi|125624430|ref|YP_001032913.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris MG1363]
 gi|116107387|gb|ABJ72527.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11]
 gi|124493238|emb|CAL98205.1| topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071217|gb|ADJ60617.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 651

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 280/629 (44%), Positives = 415/629 (65%), Gaps = 12/629 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MNEENKNLEMLADEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASHIEVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + ++G  Y   +  G++ + L + G   +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVTVHKDGQKYFQEYHRGLVRDDLKIIGET-DLRGTTVHF 178

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFV 233
           +P  +IF+   +F++D L  R+REL+FLN  ++ISL DKR   E  E+   Y+GGI+++V
Sbjct: 179 VPDPEIFTETVEFDFDKLATRVRELAFLNRGLRISLTDKREGNEKNEVHFHYEGGIQSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+ +K  + +  I  +G  D I++++AM++ D YH  V+ F NNI   +GGTH  G R
Sbjct: 239 EYLNENKTVIFEPAIFTEGEMDGIAVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I +Y +++   K+++ ++ GDD REG T+V+S+K P+P+F  QTK KL +SEV 
Sbjct: 299 TALTRVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVT 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V     + L+ ++ E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGK
Sbjct: 359 GIVNKLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++E
Sbjct: 419 LADCSSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +L TA+GTG G D +D++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G+
Sbjct: 479 IRSLFTAMGTGFGGD-YDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGY 537

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PP+YGI  G   +        ++  + ++L+   +     K  + +      +DD
Sbjct: 538 VYIAQPPIYGIKVGSETKEYIQPGENQEKDLQEALARWAQGRT--KPTVQRYKGLGEMDD 595

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               +  +   +    +  +E A  +   
Sbjct: 596 HQLWETTMDPEHRLMARVSVEDAAEADKI 624



 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
            I  G+  +       L   ++ GR   ++QRYKGLGEM+  QLWETT++P+ R + RV 
Sbjct: 557 YIQPGENQE-KDLQEALAR-WAQGRTKPTVQRYKGLGEMDDHQLWETTMDPEHRLMARVS 614

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           + DA++AD +F  LMGD VEPRREFI+ N+  S +D
Sbjct: 615 VEDAAEADKIFDMLMGDRVEPRREFIENNAQYSTID 650


>gi|262341127|ref|YP_003283982.1| DNA gyrase subunit B [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272464|gb|ACY40372.1| DNA gyrase subunit B [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 642

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 262/595 (44%), Positives = 387/595 (65%), Gaps = 10/595 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +    +Y ADSIQ L+G++ ++ RPSMYIGD  G  GLHH++YEV+DN++DE+L G+
Sbjct: 1   MSKHNTTKNYTADSIQSLEGIEHIRLRPSMYIGDV-GIRGLHHLVYEVIDNSVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ +G  T+ DNGRGIP D+HK+EG SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 60  CNKIWVTIHKNGFITILDNGRGIPIDIHKKEGKSALEVVMTKIGAGGKFDKNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+S VNALS  L + I R   IY+  ++ G     +   G      GT++ +L    
Sbjct: 120 HGVGISCVNALSEKLIVTIYRNRKIYQQEYLKGKALYSVKCLGKTNMQ-GTKIHYLVDPS 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +NY+ + +RL+EL+FLN  + + L D+R  E  +   F K G++ +++ LD+++
Sbjct: 179 IFQTITYNYEIIVNRLKELAFLNKGLYLFLKDER--ENIKEHFFSKNGLKEYLTILDKNQ 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L ++ I I+G +DN  +++AM++N  + E +  + NNI   +GGTHLSG R ALTR +
Sbjct: 237 ESLTKNVIFIEGEKDNTIVEVAMQYNTSFKEKIYSYVNNINTYEGGTHLSGFRRALTRTL 296

Query: 301 TSYVEKSFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
             Y +         K  + GDD REG T+++S+++ +P+F  QTK KL + EV  +V+  
Sbjct: 297 KKYTDGYGILSNKDKVELTGDDFREGITAIISVRVMEPQFEGQTKTKLSNHEVGGIVDKI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+++LEEHP + K I+ KV+ A+  R AAR+AR+  +++  ++ + LPGKLADCS 
Sbjct: 357 VGEMLNSYLEEHPSDRKKIIDKVILAAKARQAARKAREFIQKRNPINNSILPGKLADCSF 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            +P+  E++LVEGDSAGG+AKQGR R  QA+LPLRGKILNVE+A   K+  ++EI  +  
Sbjct: 417 NNPENCEIYLVEGDSAGGTAKQGRDRNFQAVLPLRGKILNVEKAMQYKIFENEEIKNIFA 476

Query: 480 ALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +LG  I     Q+ F++ KLRY+KIIIMTDAD+DG+HI TL+LT FFR M  LI  G +Y
Sbjct: 477 SLGVSIETEEDQEIFNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGHIY 536

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           I  PPLY I +G   QY  ++E  E+ L      + +        G ++   L  
Sbjct: 537 IATPPLYLIRKGNHSQYAWNDEERENILNQLGGRKSVNIQRYKGLGEMNAEQLWE 591



 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEG 679
           + N E   +  +    ++ N    +    E      I N   +   +I   +     ++G
Sbjct: 454 ILNVEKAMQYKIFENEEIKNIFASLGVSIETEEDQEIFNVKKLRYNKII--IMTDADIDG 511

Query: 680 S----SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRK 732
           S     I +   +Y +    +         L LI  G+  +        + I +   GRK
Sbjct: 512 SHISTLILTLFFRYMKPLIEKGHIYIATPPLYLIRKGNHSQYAWNDEERENILNQLGGRK 571

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
            +++QRYKGLGEMNA QLWETT+NP  R+L +V I + S+AD +FS LMGDEV PRR FI
Sbjct: 572 SVNIQRYKGLGEMNAEQLWETTMNPKNRTLRKVNIENDSEADKIFSILMGDEVPPRRNFI 631

Query: 793 QENSLPSALDI 803
           ++N++ + +D+
Sbjct: 632 EKNAIHAKIDV 642


>gi|218133091|ref|ZP_03461895.1| hypothetical protein BACPEC_00953 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991964|gb|EEC57968.1| hypothetical protein BACPEC_00953 [Bacteroides pectinophilus ATCC
           43243]
          Length = 640

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 254/621 (40%), Positives = 372/621 (59%), Gaps = 11/621 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + YD  SI IL+GL+AV+KRP MYIG   G  GL+H+IYE+ DNA+DE L G+   I
Sbjct: 1   MAGNKYDESSISILEGLEAVRKRPGMYIGSV-GTKGLNHLIYEIADNAVDEHLAGFCSEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVTLN DGS T++DNGRGIPT +H + GIS  +V+ T LHAGGKF    YK+SGGLHGVG
Sbjct: 60  TVTLNADGSATIADNGRGIPTGIHPKAGISTVDVVFTMLHAGGKFGDGGYKISGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
            SVVNALS WL++ IKR+G ++   +  G     L  TG+   +DTG+ +TFLP  +IF 
Sbjct: 120 ASVVNALSVWLEVTIKRDGIVWHQRYEKGRRTGELTQTGTCRKHDTGSTITFLPDGEIFE 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR---EITMFYKGGIEAFVSYLDRHK 240
              F  + ++ RL E ++LN  + I   DKR  E       T   + GI++++  L+  K
Sbjct: 180 KTVFKAEAIKSRLHETAYLNPGLTIHFEDKRHIETPGDDIETFHEEDGIKSYIKDLNEGK 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +    I  +  R+ I ++ A ++ + + ENVL F NNI  ++GGTH++G +S  T  I
Sbjct: 240 ECIH-DIIYFKKKREGIEVEAAFQFVNEFEENVLGFCNNIYTQEGGTHITGFKSKFTTII 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K    +  G D R G T+++++K P+PRF  QTK KL + +   VV    
Sbjct: 299 NQYARELGILKDKDANFTGLDVRNGMTAIIAVKHPEPRFEGQTKTKLDNPDAGKVVAEIT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  + +++    K ++     ++ +R A  +A+     K      +  GKLA+C  R
Sbjct: 359 GEELQLFFDKNLETLKSVIACAEKSAKIRKAEEKAKTNMLVKPKFSYDT-NGKLANCESR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P++ E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+IT+
Sbjct: 418 NPEECEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASIDKVLANAEIKTMITS 477

Query: 481 LGTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G      + FDI++LRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI+ G +YI 
Sbjct: 478 FGCGFLEGYGNDFDISRLRYNKIIIMTDADVDGAHIDTLLLTFFYRFMPELINQGHVYIA 537

Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY  I +    QY+ D+++LE Y    + +  ++ +     + ++      ++   +
Sbjct: 538 TPPLYKAIPKKGEEQYIYDDKALEKYRKTHTGAFTLQRYKGLGEMDAQQLWETTLNPETR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           I K ++              +
Sbjct: 598 ILKQVEIEDARMATEVTSMLM 618



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 9/101 (8%)

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRS 761
           ++   G++  I       D      RK      ++QRYKGLGEM+A QLWETTLNP+TR 
Sbjct: 544 AIPKKGEEQYIYD-----DKALEKYRKTHTGAFTLQRYKGLGEMDAQQLWETTLNPETRI 598

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           L +V+I DA  A ++ S LMG +V PRREFI  ++  + +D
Sbjct: 599 LKQVEIEDARMATEVTSMLMGSDVAPRREFIYTHANEAEID 639


>gi|323487683|ref|ZP_08092941.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2]
 gi|323398417|gb|EGA91205.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2]
          Length = 642

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 285/591 (48%), Positives = 402/591 (68%), Gaps = 5/591 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +     SY+A  IQ+L+GL+AV+KRP MYIG T G  GLHH+++E++DN+IDE+L G+
Sbjct: 3   MEEKGLQESYEASQIQVLEGLEAVRKRPGMYIGST-GARGLHHLVWEIVDNSIDEALAGH 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V++  D    V DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGL
Sbjct: 62  CTEIRVSIEPDNWIRVEDNGRGIPVGMQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 121

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS   ++ + R+   + + F  G +   L V G + + TGT + F   ++
Sbjct: 122 HGVGASVVNALSETTEVYVNRDEKRHYIKFERGAVTEELNVIGDSDH-TGTTIRFKADAE 180

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     + +D L HRLREL++LN  ++I + D+R  E +E    ++GGI+++V +L++ 
Sbjct: 181 IFKETTVYEFDILDHRLRELAYLNRGLKIVVKDEREGEEKEKIYHFEGGIKSYVEHLNKS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K PL +  I ++  RD I++++AM++N GY  N+  F NNI   +GGTH SG ++ALTR 
Sbjct: 241 KDPLHEEAIFVEAERDGITVEVAMQYNAGYAANIFSFANNINTHEGGTHESGFKTALTRV 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  Y  K    K+   ++ GDD REG T+++S+K PDP+F  QTK KL ++EV ++V + 
Sbjct: 301 VNDYGRKKSMLKEQDLNLTGDDVREGLTAIISVKHPDPQFEGQTKTKLGNTEVSTIVNNL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++G   +L E+P  +K IV+K + AS  R AA++AR+ TRRK VL+++SLPGKLADCS 
Sbjct: 361 FSNGFERFLLENPAVSKKIVEKGIMASHARMAAKKAREFTRRKSVLEVSSLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDPK SE+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 421 RDPKISEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILTNDEIRNIIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG++ F++ K RYHKI+IMTDADVDGAHIRTLLLTF FR M  L+  G++YI +P
Sbjct: 481 ALGTGIGEE-FNLEKARYHKIVIMTDADVDGAHIRTLLLTFLFRYMRPLLEAGYIYIAQP 539

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PL+ I +GK ++YV  +  L+  L N S + +         G ++   L +
Sbjct: 540 PLFQIKQGKHVEYVYTDAQLKTALENLSPTPKPNIQRYKGLGEMNATQLWD 590



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 4/199 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +    ++ N +  +     + ++        +V  
Sbjct: 446 RHFQAIL--PLRGKILNVEKARLDRILTNDEIRNIITALGTGIGEEFNLEKARYHKIVIM 503

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F F      + +  I      +  +        +     L   +
Sbjct: 504 TDADVDGAHIRTLLLTFLFRYMRPLLEAGYIYIAQPPLFQIKQGKHVEYVYTDAQLKTAL 563

Query: 727 FSIG-RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
            ++      ++QRYKGLGEMNA+QLW+TT++PD R+LL+V + DA  AD+ F  LMGDEV
Sbjct: 564 ENLSPTPKPNIQRYKGLGEMNATQLWDTTMDPDVRTLLQVTLNDAMVADETFHILMGDEV 623

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRR FI+EN+     LD+
Sbjct: 624 EPRRNFIEENAKYVKNLDV 642


>gi|288905669|ref|YP_003430891.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34]
 gi|288732395|emb|CBI13967.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34]
          Length = 650

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 276/628 (43%), Positives = 403/628 (64%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEENKNLAELAKEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATHIEVFIEKDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + R G I+   +  G + + L V G   +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVAVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI ++V 
Sbjct: 179 TPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEKHYHYEGGISSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +++ +K+ + ++PI   G  D IS+++AM++   YHE V+ F NNI   +GGTH  G R+
Sbjct: 239 FINENKEVIFENPIYTDGELDGISVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  ++   K+   ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D   +ELF+VEGDSAGGSAK GR RE+QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++      + ++  + +++         SK  + +      +DD 
Sbjct: 538 YIAQPPIYGVKVGSEIKEYIQPGANQEIELQEAM--ARHSVGRSKPTVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      +    S+GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 548 KVGSEIKEYIQPGANQEIE-LQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWETTMDPE 605

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LDI
Sbjct: 606 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDI 650


>gi|203284344|ref|YP_002222084.1| DNA gyrase, subunit B [Borrelia duttonii Ly]
 gi|201083787|gb|ACH93378.1| DNA gyrase, subunit B [Borrelia duttonii Ly]
          Length = 639

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/584 (47%), Positives = 405/584 (69%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YE++DN+IDE+L G+ D I V +
Sbjct: 7   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEIVDNSIDEALAGFCDRIEVVI 65

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S  V+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVGVSVV
Sbjct: 66  NSDNSIMVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGVSVV 125

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + REG +++ ++  GI  + + V G +   TGT+VTF   S+IF    ++
Sbjct: 126 NALSSFLEVVVSREGKLFKQTYSRGIPTSEVEVVGVSS-TTGTKVTFFADSEIFETLKYD 184

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ D+R  E + +  +++GGI+AFV Y+  + K +  SP 
Sbjct: 185 FETLSRRLRELAFLNDKIRISIEDRRLGEEKFLEFYFEGGIKAFVDYITNNNKNIQSSPY 244

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G  +++ + + ++W +GY +N L F NNI  K+GGTH++G +S L + ++     S 
Sbjct: 245 FIEGVCNDVIVSVGLKWTEGYSDNTLSFVNNINTKEGGTHVAGFKSGLLKAMSEAFRDSK 304

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++  DD +EG T+V+SIK+P+P+F  QTK KL +S ++ +VE+ V DGL   +
Sbjct: 305 ISKKDIPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVYDGLLRII 364

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+ +E  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 365 NENFVEIDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCTSKNPAEREIY 424

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 425 IVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKA 484

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI N  +YI  PPLY I    
Sbjct: 485 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNKHVYIAMPPLYKIKHEN 543

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
            + Y  D+   E +L +  +   ++         G ++   L  
Sbjct: 544 KVHYFYDDFEKETFLGSIDVVKRNKVSLQRYKGLGEMNPTQLWE 587



 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKAFYIEKLRYHKIIIMADADVDGSHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F F    + I +  +      +  +                  L +I  + R  +S+Q
Sbjct: 513 LTFFFRYMRELIDNKHVYIAMPPLYKIKHENKVHYFYDDFEKETFLGSIDVVKRNKVSLQ 572

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT+NP TR +  ++I DA QA+ +F  LMGD+VEPRREFI++N+L
Sbjct: 573 RYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAEKIFVTLMGDDVEPRREFIEQNAL 632

Query: 798 P-SALDI 803
               LD+
Sbjct: 633 DVVNLDV 639


>gi|302336536|ref|YP_003801743.1| DNA gyrase subunit B [Olsenella uli DSM 7084]
 gi|301320376|gb|ADK68863.1| DNA gyrase subunit B [Olsenella uli DSM 7084]
          Length = 667

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 282/592 (47%), Positives = 382/592 (64%), Gaps = 16/592 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +    SY A  I++LKGL+AV+KRP MYIG T  ++GLHH+++E++DN++DE++ G+ + 
Sbjct: 3   SKNEHSYGASEIKVLKGLEAVRKRPGMYIG-TTSKTGLHHLVWEIVDNSVDEAMAGFCNK 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV DNGRGIPT +H  E     EV++T LHAGGKF+  +YKVSGGLHGV
Sbjct: 62  IQVTVHADNSVTVVDNGRGIPTAMHPVERKPTLEVVLTVLHAGGKFDNNAYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSDIF 182
           G+SVVNALS  L  ++KR+G I E+    G +   +   G  + N TGT VTF P   IF
Sbjct: 122 GISVVNALSKRLVAQVKRDGVINEIELSRGKVTKKMHKVGTCSPNVTGTTVTFWPDDQIF 181

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK- 241
               ++YDTL   L+E +FLN  V+I L D+R   PR     Y GGI  FV +L+  K  
Sbjct: 182 ETMTYDYDTLHDHLQETAFLNKGVKIVLTDERELVPRVDEFCYAGGIIDFVKFLNEGKTV 241

Query: 242 -PLMQSPIRIQG-------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                 PI I+G         +   ++++M+WN GY E V+ F N+I  ++GG HL G R
Sbjct: 242 LSGCSKPIYIEGTSDPAAPESNKGEVEVSMQWNSGYSEMVMSFANDIYTEEGGMHLEGFR 301

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT+ +  Y       K+   ++ GDD REG T+V+S+K+PDP+F  QTK KL SS +R
Sbjct: 302 TALTKTVNDYARNHKLLKERDSNLTGDDIREGMTAVISVKLPDPQFEGQTKAKLGSSYMR 361

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           ++    V+ GL+ +LEEHP +A+ + KK   A+  R AA++AR  TRRK +L+ A+LPGK
Sbjct: 362 TLTNKIVSAGLAEYLEEHPNQAREMFKKAAQAAKGRLAAQKARQATRRKSILESAALPGK 421

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS RD   +ELF+VEGDSAGGSAK GR R+ QAILPLRGKILNVER    +  SS+ 
Sbjct: 422 LADCSVRDASMTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSET 481

Query: 474 IGTLITALGTGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           I +LITA+GTG+         FDI K RYHKIIIMTDADVDGAHIR LL+TFF++ M  L
Sbjct: 482 IQSLITAIGTGVTMSNGEGGDFDIAKARYHKIIIMTDADVDGAHIRILLMTFFYKYMRPL 541

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           I  GF+Y   PP++G+  GK + YV  +   ++ ++ Q   EE     +   
Sbjct: 542 IDAGFVYAACPPIFGVKVGKRIHYVYPDSETDENVLLQQAIEECVPRDEEGK 593



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 55/78 (70%), Gaps = 2/78 (2%)

Query: 728 SIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             G+ +  S+QRYKGLGEM+  QL +TT++P TR L R+ I DA++A+   SRLMG  VE
Sbjct: 590 EEGKQRKYSVQRYKGLGEMDPQQLADTTMDPKTRILQRISIDDAARAERAVSRLMGTSVE 649

Query: 787 PRREFIQENSLPSA-LDI 803
            RR++I++++  +  LDI
Sbjct: 650 YRRDYIEQHAKDARFLDI 667


>gi|306831763|ref|ZP_07464920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426188|gb|EFM29303.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 650

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 276/628 (43%), Positives = 403/628 (64%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEENKNLAELAKEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATHIEVFIEEDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + R G I+   +  G + + L V G   +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVSVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI ++V 
Sbjct: 179 TPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEKHYHYEGGISSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +++ +K+ + ++PI   G  D IS+++AM++   YHE V+ F NNI   +GGTH  G R+
Sbjct: 239 FINENKEVIFENPIYTDGELDGISVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  ++   K+   ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D   +ELF+VEGDSAGGSAK GR RE+QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++      + ++  + +++         SK  + +      +DD 
Sbjct: 538 YIAQPPIYGVKVGSEIKEYIQPGANQEIELQEAM--ARHSVGRSKPTVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      +    S+GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 548 KVGSEIKEYIQPGANQEIE-LQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWETTMDPE 605

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LDI
Sbjct: 606 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDI 650


>gi|160878167|ref|YP_001557135.1| DNA gyrase, B subunit [Clostridium phytofermentans ISDg]
 gi|160426833|gb|ABX40396.1| DNA gyrase, B subunit [Clostridium phytofermentans ISDg]
          Length = 642

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 302/641 (47%), Positives = 417/641 (65%), Gaps = 10/641 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY + I V
Sbjct: 2   SKDYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGYCNTIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N D S TV DNGRGIP + +K++GIS  EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  SINPDNSITVIDNGRGIPVETNKKKGISTVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS WL++ ++ EG +Y+  +  G +  PL V G + + TGT V+FLP   IF    
Sbjct: 121 VVNALSEWLEVTVELEGKMYKQRYECGKVIEPLRVVGES-DRTGTTVSFLPDRSIFEETV 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDRHK 240
           ++YD L+ RLRE++FL   ++I L D      + + EP      Y+GGI+ +V YL++HK
Sbjct: 180 YDYDILKQRLREMAFLTKGLKIILRDLRTSEEEGNTEPNVKEFHYEGGIKEYVQYLNKHK 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L    I  +G+RD++ +++AM+ ND Y E+   F NNI   +GGTH +G ++A+T+  
Sbjct: 240 SNLYPEIIYCEGTRDSVYVEVAMQHNDSYSESCYSFVNNITTPEGGTHYTGFKNAITKTF 299

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +  +    K ++ ++ G+D REG T+++SIK+PDP+F  QTK+KL +SE R+ V+S V
Sbjct: 300 NDFARQMKFLKDNETNLSGEDIREGLTAIISIKLPDPQFEGQTKQKLGNSEARAAVDSVV 359

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++ L+ +LE++P  AKII++K + A   RDAAR+ARDLTRRK  L+  SLPGKLADCS++
Sbjct: 360 SEQLTYFLEQNPSVAKIILEKAVLAQRARDAARKARDLTRRKTALEGMSLPGKLADCSDK 419

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DPK  E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE++R DK+L + EI  +ITA
Sbjct: 420 DPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILVNNEIKAMITA 479

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGI  D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI +G++Y+ +PP
Sbjct: 480 FGTGI-SDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIRDGYVYLAQPP 538

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY + + K + Y   +E L + L+     +          G +    L     D  +   
Sbjct: 539 LYKVEKSKQVWYAYSDEDLNNILLQIGRDQNNKIQRYKGLGEMDAEQLWETTMDPERRVL 598

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           L       +              N E  +E   + A  + N
Sbjct: 599 LRVKMDEENSSEIDLTFTTLMGDNVEPRREFIEANAKYVKN 639



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILS--LIC 709
            G  ++ DI   R  + +      ++G+ I +    +  R     I + Y+ +    L  
Sbjct: 482 TGISDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIRDGYVYLAQPPLYK 541

Query: 710 NGDKIKI---TGPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
                ++        L + +  IGR +   +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 542 VEKSKQVWYAYSDEDLNNILLQIGRDQNNKIQRYKGLGEMDAEQLWETTMDPERRVLLRV 601

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           K+ + +  + D  F+ LMGD VEPRREFI+ N+     LDI
Sbjct: 602 KMDEENSSEIDLTFTTLMGDNVEPRREFIEANAKYVKNLDI 642


>gi|203287878|ref|YP_002222893.1| DNA gyrase, subunit B [Borrelia recurrentis A1]
 gi|201085098|gb|ACH94672.1| DNA gyrase, subunit B [Borrelia recurrentis A1]
          Length = 639

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/584 (47%), Positives = 404/584 (69%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YE++DN+IDE+L G+ D I V +
Sbjct: 7   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEIVDNSIDEALAGFCDRIEVVI 65

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S  V+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVGVSVV
Sbjct: 66  NSDNSIMVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGVSVV 125

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + REG +++ ++  GI  + + V G     TGT+VTF   S+IF    ++
Sbjct: 126 NALSSFLEVVVSREGKLFKQTYSRGIPTSEVEVVG-VSFTTGTKVTFFADSEIFETLKYD 184

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ D+R  E + +  +++GGI+AFV Y+  + K +  SP 
Sbjct: 185 FETLSRRLRELAFLNDKIRISIEDRRLGEEKFLEFYFEGGIKAFVDYITNNNKNIQSSPY 244

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G  +++ + + ++W +GY +N L F NNI  K+GGTH++G +S L + ++     S 
Sbjct: 245 FIEGVCNDVIVSVGLKWTEGYSDNTLSFVNNINTKEGGTHVAGFKSGLLKAMSETFRDSK 304

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++  DD +EG T+V+SIK+P+P+F  QTK KL +S ++ +VE+ V DGL   +
Sbjct: 305 ISKKDIPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVYDGLLRII 364

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+ +E  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 365 NENFVEIDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCTSKNPAEREIY 424

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 425 IVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKA 484

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI N  +YI  PPLY I    
Sbjct: 485 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNKHVYIAMPPLYKIKHEN 543

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
            + Y  D+   E +L +  +   ++         G ++   L  
Sbjct: 544 KVHYFYDDFEKETFLGSIDVGKRNKVSLQRYKGLGEMNPTQLWE 587



 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKAFYIEKLRYHKIIIMADADVDGSHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKG-ISMQ 737
             F F    + I +  +      +  +                  +    +G++  +S+Q
Sbjct: 513 LTFFFRYMRELIDNKHVYIAMPPLYKIKHENKVHYFYDDFEKETFLGSIDVGKRNKVSLQ 572

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT+NP TR +  ++I DA QA+ +F  LMGD+VEPRREFI++N+L
Sbjct: 573 RYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAEKIFVTLMGDDVEPRREFIEQNAL 632

Query: 798 P-SALDI 803
               LD+
Sbjct: 633 DVVNLDV 639


>gi|291563505|emb|CBL42321.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SS3/4]
          Length = 639

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 262/622 (42%), Positives = 380/622 (61%), Gaps = 14/622 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ADSI +L+GL+AV+KRP MYIG   G  GL+H+IYE++DNA+DE L G+   I
Sbjct: 1   MAKAQYNADSITVLEGLEAVRKRPGMYIGGV-GTKGLNHLIYEIVDNAVDEHLAGFCTEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVTL  DGSCTV DNGRGIP ++HK+ G+SA  V+++ LHAGGKF+  SYK SGGLHGVG
Sbjct: 60  TVTLEADGSCTVKDNGRGIPVEMHKK-GVSAERVVLSTLHAGGKFDNNSYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSS 179
            SVVNALS  +K++I R+G +Y   +  G     L      V G +  +TGTE+ FLP  
Sbjct: 119 SSVVNALSDRMKVKISRDGKVYYDEYEKGHPVIELKDGLLPVIGKSK-ETGTEINFLPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    F  + L+ RL E ++LN ++ +  ++KR+ E   IT     GI A+V  L+  
Sbjct: 178 TIFEKTKFKAEWLKSRLHESAYLNPNLALHYVNKRAGEEEMITYHEPDGIIAYVRELNNG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+   P+  +GS D I +++A ++ D + EN+L F NNI  ++GGTHL G ++  T+ 
Sbjct: 238 KDPVH-EPVYFKGSVDRIEVEVAFQFVDAFEENILGFCNNIFTQEGGTHLVGFKTKFTQL 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY  +    K+   +  G D R G T+V+++K PDP F  QTK KL S++    V + 
Sbjct: 297 INSYARELGILKEKDSNFTGADTRNGMTAVVAVKHPDPIFEGQTKTKLASADATKAVFTM 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             D L  + + +    K I+     ++ +R A  +A+     K      S  GKLA+C  
Sbjct: 357 TGDELERFFDRNLDTLKAIIACAEKSAKIRKAEEKAKTNMLSKSKFSFDS-NGKLANCES 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP K E+F+VEGDSAGGSAK GR+R+ QAILP+RGKILNVE+A  DK+L++ EI T+I 
Sbjct: 416 RDPSKCEIFIVEGDSAGGSAKMGRNRQFQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           A G G  +   + FDI KL+Y KI++MTDADVDG+HI TLLLTF +R MP LI++G +YI
Sbjct: 476 AFGCGFSEGYGNDFDITKLKYDKIVLMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYI 535

Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
             PPLY  + +    +Y+ D+++LE+Y  N +    ++ +     + +       ++   
Sbjct: 536 AMPPLYKVVPKRGEERYLYDDKALEEYKKNHAGDFTLQRYKGLGEMDADQLWETTLNPEN 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
           ++ K ++           E  +
Sbjct: 596 RVLKRVEIEDARMASEVTELLM 617



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 14/191 (7%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN----NSDILVKRIARGVQEQFV 676
           + N E      V   +++   +N       + +    +      D +V      V    +
Sbjct: 453 ILNVEKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDITKLKYDKIVLMTDADVDGSHI 512

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIGRKG-- 733
                 F +    + I+   +      +  ++   G++  +       D      +K   
Sbjct: 513 DTLLLTFLYRFMPELIYDGHVYIAMPPLYKVVPKRGEERYLYD-----DKALEEYKKNHA 567

Query: 734 --ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
              ++QRYKGLGEM+A QLWETTLNP+ R L RV+I DA  A ++   LMG +V PR++F
Sbjct: 568 GDFTLQRYKGLGEMDADQLWETTLNPENRVLKRVEIEDARMASEVTELLMGSDVPPRKKF 627

Query: 792 IQENSLPSALD 802
           I +++  + +D
Sbjct: 628 IYDHADEAEID 638


>gi|306833889|ref|ZP_07467013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus bovis
           ATCC 700338]
 gi|304423890|gb|EFM27032.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus bovis
           ATCC 700338]
          Length = 650

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 275/628 (43%), Positives = 403/628 (64%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEENKNLAELAKEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATHIEVFIEKDDSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + R G I+   +  G + + L V G   +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVSVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI ++V 
Sbjct: 179 TPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEKHYHYEGGISSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +++ +K+ + ++PI   G  D +S+++AM++   YHE V+ F NNI   +GGTH  G R+
Sbjct: 239 FINENKEAIFENPIYTDGELDGVSVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  ++   K+   ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D   +ELF+VEGDSAGGSAK GR RE+QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++      + ++  + +++         SK  + +      +DD 
Sbjct: 538 YIAQPPIYGVKVGSEIKEYIQPGANQEIELQEAM--ARHSVGRSKPTVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      +    S+GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 548 KVGSEIKEYIQPGANQEIE-LQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWETTMDPE 605

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LDI
Sbjct: 606 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDI 650


>gi|126660369|ref|ZP_01731481.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110]
 gi|126618342|gb|EAZ89099.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110]
          Length = 642

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 288/636 (45%), Positives = 406/636 (63%), Gaps = 9/636 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S+Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I
Sbjct: 2   TTKSNYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +N DGS TV+D+GRGIPTD+H   G SA E +MT LHAGGKF    YKVSGGLHGVG
Sbjct: 61  EIDINPDGSVTVTDDGRGIPTDVHPSTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS W+ +++ R+  ++   +  G+    L       + TGT ++FLP   IF+V
Sbjct: 121 VSVVNALSEWVIVKVWRDDQVHTQRYERGVPITSLETKADKDHSTGTSISFLPDKTIFTV 180

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+Y TL  RLREL++LN+ V+I+  D R  EP   +  Y+GGI+ +V+Y+ R K PL
Sbjct: 181 GTEFDYSTLAGRLRELAYLNAGVKITFTDNRKEEPHIESYCYEGGIKEYVTYMCRDKDPL 240

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            Q  I + G ++   +++A +   D Y +N+L F NNI   DGGTHL GL++ LTR + +
Sbjct: 241 HQDIIFVSGEKNGTQVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNN 300

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
              K    K +  ++ G++ REG T V+S+K+P+P F  QTK KL ++EVR +V+S V +
Sbjct: 301 VARKRNKLKDNDSNLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGE 360

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS +LE +P  A  I++K + A    +AARRAR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 361 VLSEYLEFNPHVADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDP 420

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           ++SE+FLVEGDSAGGSAKQGR R  QAILPLRGKI+N+E+    ++  + EI +LITALG
Sbjct: 421 EESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQSLITALG 480

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  + FD ++LRYH+I+IMTDADVDGAHIRTLLLTFF+R   SL+  G++YI  PPLY
Sbjct: 481 LGIKGEEFDSSQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLY 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            + RG++  Y  +E  L++++ +   +           G +    L +       ++   
Sbjct: 541 KVERGRNHVYCYNERQLQEHINSLPANANYSIQRFKGLGEMMPTQLWDT-----TMNPET 595

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +       +   E   I  +   +        + + 
Sbjct: 596 RRMKQVEIEDAAEADRIFTILMGDRVAPRREFIETY 631



 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 12/159 (7%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTI--LSLI 708
              ++S +   RI   +     ++G+ I +    F  +Y+R   ++            + 
Sbjct: 486 EEFDSSQLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLYKVE 543

Query: 709 CNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
              + +       L + I S+      S+QR+KGLGEM  +QLW+TT+NP+TR + +V+I
Sbjct: 544 RGRNHVYCYNERQLQEHINSLPANANYSIQRFKGLGEMMPTQLWDTTMNPETRRMKQVEI 603

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS--LPSA-LDI 803
            DA++AD +F+ LMGD V PRREFI+     L    LDI
Sbjct: 604 EDAAEADRIFTILMGDRVAPRREFIETYGPKLDLNDLDI 642


>gi|326486754|gb|ADZ76420.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 588

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 274/559 (49%), Positives = 386/559 (69%), Gaps = 5/559 (0%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T    GLHH+++E++DN+IDE+L GY   I + +  D S TV DNGRGIP  + ++ G
Sbjct: 1   GSTSS-KGLHHLVWEIVDNSIDEALAGYCTDINIEIEKDNSITVKDNGRGIPVGIQEKMG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
             A EVIMT LHAGGKF+   YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  
Sbjct: 60  RPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYER 119

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLI 211
           G+    L V G   + TGT   F+P  +IF     ++YD L +R+REL+FL   V I++ 
Sbjct: 120 GVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIE 178

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           DKR  + R+    Y+GGI+++V YL+R K+ + + PI I+G +D I++++A+++ND Y  
Sbjct: 179 DKREGQERKNEYHYEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGITVEVALQYNDSYTS 238

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  FTNNI   +GGTH +G ++ LTR I  Y  +    K++  ++ GDD REG T+++S
Sbjct: 239 NIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIIS 298

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           IK PDP+F  QTK KL +SE R++ ++  +  L  +L E+P  A+ IV+K L A+  R A
Sbjct: 299 IKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMA 358

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAIL
Sbjct: 359 AKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAIL 418

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDGA
Sbjct: 419 PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDGA 477

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTFF+R M  +I NG++YI +PPLY + +GK ++Y  +++ L++ L     S +
Sbjct: 478 HIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQLDELLKELPQSPK 537

Query: 572 I-ELFCDSKGVISKNDLRN 589
                    G ++   L  
Sbjct: 538 PGLQRYKGLGEMNATQLWE 556



 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 9/182 (4%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++ + +  +     + ++        +V  
Sbjct: 412 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 469

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSL 722
               V    +      F +    + I +  +       L  +  G +++          L
Sbjct: 470 TDADVDGAHIRTLLLTFFYRYMREIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKQLDEL 528

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L  +    + G+  QRYKGLGEMNA+QLWETT++P TR+LL+V + DA  AD+ F  LMG
Sbjct: 529 LKELPQSPKPGL--QRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEMLMG 586

Query: 783 DE 784
           D+
Sbjct: 587 DK 588


>gi|225028802|ref|ZP_03717994.1| hypothetical protein EUBHAL_03081 [Eubacterium hallii DSM 3353]
 gi|224953886|gb|EEG35095.1| hypothetical protein EUBHAL_03081 [Eubacterium hallii DSM 3353]
          Length = 638

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/617 (40%), Positives = 375/617 (60%), Gaps = 8/617 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           Q ++Y+A+SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY   I 
Sbjct: 3   QQTTYNANSIAVLEGLEAVRKRPGMYIGSVS-TRGLNHLIYEIVDNAVDEHLAGYCSNIQ 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L+ DG+ T+ DNGRGIPT ++ + GI A E++ T LHAGGKF    YK+SGGLHGVG 
Sbjct: 62  VILDEDGTATIQDNGRGIPTGINSKTGIPAVEMVFTMLHAGGKFGTGGYKISGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184
           SVVNALS WL+++++ EG +Y+  +  G    PL V G+    DTGT VTFLP  +IF  
Sbjct: 122 SVVNALSVWLEVKVRSEGKVYQQMYEKGKAVAPLEVIGTCRKGDTGTTVTFLPDGEIFDK 181

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F  ++++ RL E ++LN  + I+  ++R  E   +    + G++A+V  L++  KP +
Sbjct: 182 TYFKAESIKSRLHETAYLNPGLSITFENRRPGEEETVLFHEEEGLKAYVRDLNKG-KPAV 240

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              +  +   D+I ++ A ++ D + E ++ F NNI   +GGTH++G ++  T  +  Y 
Sbjct: 241 GEIVYFKKKVDDIEVEAAFQYVDEFQETIMGFCNNICTMEGGTHITGFKTKFTSVMNQYA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            +    K+  ++  G D R G T+VLSIK  DPRF  QTK KL + +    V   + + L
Sbjct: 301 RELGILKEKDKNFTGADVRNGMTAVLSIKHKDPRFEGQTKTKLDNPDAGKAVSEVLGEEL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + + +  E K ++     ++ +R A  RAR     K    I +  GKLA+C  R+P++
Sbjct: 361 PLYYDRNLEELKKVIACAEKSAKIRKAEERARTNLISKSKFSIDT-NGKLANCESRNPEE 419

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I   G G
Sbjct: 420 CEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASMDKVLANAEIKTMIHTFGCG 479

Query: 485 IGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
             +   + FDI+KL+Y+KI+IMTDADVDGAHI TLLLTFF+R MP LIH G +Y+  PPL
Sbjct: 480 FSEGYGNDFDISKLKYNKIVIMTDADVDGAHIATLLLTFFYRFMPDLIHQGHVYLATPPL 539

Query: 542 YG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y  I +    +Y+ D+ +LE+Y  N   +  ++ F     + ++      ++   +I K 
Sbjct: 540 YKAIPKRGKEEYLYDDRALENYRKNHKSNFTLQRFKGLGEMDAEQLWETTLNPETRILKQ 599

Query: 601 IKDFYPNHDKTFIEQAV 617
           ++              +
Sbjct: 600 VEIEDGRLASEVTSMLM 616



 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 1/97 (1%)

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           ++   G +  +      L+      +   ++QR+KGLGEM+A QLWETTLNP+TR L +V
Sbjct: 542 AIPKRGKEEYLYDDR-ALENYRKNHKSNFTLQRFKGLGEMDAEQLWETTLNPETRILKQV 600

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +I D   A ++ S LMG EV PRR FI  ++  + LD
Sbjct: 601 EIEDGRLASEVTSMLMGSEVPPRRAFIHAHAQDADLD 637


>gi|153854251|ref|ZP_01995550.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814]
 gi|149753026|gb|EDM62957.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814]
          Length = 643

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 291/591 (49%), Positives = 394/591 (66%), Gaps = 4/591 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M        Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+
Sbjct: 1   MGTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D S TV DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGL
Sbjct: 60  CDTIYVTINKDNSVTVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS+WL++ I  EG +Y+  +  G +   L V G      TGT+VTFLP  
Sbjct: 120 HGVGASVVNALSNWLEVEIYHEGKVYQQRYERGKVMEKLTVIGDCEEEKTGTKVTFLPDD 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    F+++ L+ R RE++FL   ++I L D R  EP+E T  Y+GGI+ FV+YL+R 
Sbjct: 180 TIFETTIFDFNVLKQRFREMAFLTKGLKIVLKDDREEEPKERTFHYEGGIKEFVTYLNRS 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             PL +  I  +G  +N+S+++AM+ ND Y +N   F NNI   +GGTH+ G R+A+T+ 
Sbjct: 240 ATPLYEQIIYCEGMVNNVSVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNAITKT 299

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
              Y  K+   + ++ ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V++ 
Sbjct: 300 FNDYARKNKLLRDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNV 359

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V+  L  +LE++P   KIIV+K + +   R+AAR+ARDLTRRK  LD  +LPGKLADCS+
Sbjct: 360 VSKQLEIFLEQNPAVGKIIVEKSVMSQRAREAARKARDLTRRKSALDNMALPGKLADCSD 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++P+  E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+  + EI  +IT
Sbjct: 420 KNPENCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMIT 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +P
Sbjct: 480 AFGTGIHED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQP 538

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           PLY + + K + Y   +E L + +                 G +    L  
Sbjct: 539 PLYKLEKNKKVWYAYSDEELSNIINEVGRDGNNKIQRYKGLGEMDAEQLWE 589



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y+      +  
Sbjct: 483 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYK 542

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           L  N           L + I  +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 543 LEKNKKVWYAYSDEELSNIINEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRV 602

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + D +  + D  F+ LMGD+VEPRREFI EN+     LD+
Sbjct: 603 TMDDETTSELDLTFTTLMGDKVEPRREFIVENAKYVKNLDV 643


>gi|124485239|ref|YP_001029855.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z]
 gi|124362780|gb|ABN06588.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z]
          Length = 651

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 290/638 (45%), Positives = 405/638 (63%), Gaps = 31/638 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+DN     YDA  I +L+GL  V++RP+MYIG TD   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MTDN-----YDASHITVLEGLTPVRERPAMYIGSTD-TRGLHHLVYEVVDNSIDEALAGF 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + +N +GS +V D+GRGIP D+  ++  SA EV+MT LHAGGKF++ +Y+VSGGL
Sbjct: 55  CKHIVIIINPNGSVSVEDDGRGIPVDIMPKQNKSALEVVMTVLHAGGKFDKNTYQVSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--------------- 165
           HGVGVSVVNALS+ L   + R+GNIY M F  G+L  PL                     
Sbjct: 115 HGVGVSVVNALSTRLTAEVYRDGNIYSMVFGKGVLLQPLTSRPETDEEYLLRQKRLDKEG 174

Query: 166 ---GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                 TGT +TF P   IF   +F+YD L HR REL++LN  ++I + D R+ +    T
Sbjct: 175 QPKETTTGTRITFYPDGSIFETTEFDYDVLAHRFRELAYLNKGLEIHVEDHRTGDS--DT 232

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRI--QGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
             Y+GG+  FV++L+  K+ L   PI +      + I +++A+++ND Y E +  + N++
Sbjct: 233 FCYEGGLRQFVAHLNEGKELLHPEPIYVDKSDDVNKIEVEVALQYNDTYGEILYTYVNSV 292

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G RSALTR I +    +   K +  SV G+D REG T+V+S+K+ +P+F 
Sbjct: 293 NTREGGTHLEGFRSALTRAINNIAHANKHLK-EDVSVRGEDVREGLTAVISVKIANPQFE 351

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK +L +S V+ +V+S +   L+ + EE+P     I KK LDA+  R+AARRA++L R
Sbjct: 352 GQTKMRLGNSNVKGLVDSMMYQALTEFFEENPKVIAAIAKKSLDAANAREAARRAKELAR 411

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+++ LPGKLADCSERDP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNV
Sbjct: 412 RKTSLEMSGLPGKLADCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNV 471

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+A   K L + EI TLITA+G G G D FD  + RYH I+IMTDADVDGAHIR LLLTF
Sbjct: 472 EKALEHKALKNAEIQTLITAIGAGYG-DKFDAERARYHHIVIMTDADVDGAHIRILLLTF 530

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+R M  L+  G++YI +PPL+ I +GK  +YV  EE +   +                G
Sbjct: 531 FYRFMKPLVEMGYIYIAQPPLFRIAKGKQEKYVYTEEDMRLAIAEYGEKGISVQRYKGLG 590

Query: 581 VISKNDLRN-FIDDALKIDKLIKDFYPNHDKTFIEQAV 617
            ++   L N  ++   +I K ++    ++     E+ +
Sbjct: 591 EMNAGQLWNTTMNPEFRILKQVRIEDASYANEIFEKLM 628



 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   E      +++   +  I       +         +V      V    +    
Sbjct: 468 ILNVEKALEHKALKNAEIQTLITAIGAGYGDKFDAERARYHHIVIMTDADVDGAHIRILL 527

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      +    I      +  +     +  +     +   I   G KGIS+QRYK
Sbjct: 528 LTFFYRFMKPLVEMGYIYIAQPPLFRIAKGKQEKYVYTEEDMRLAIAEYGEKGISVQRYK 587

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLW TT+NP+ R L +V+I DAS A+++F +LMGD+V PR++FI+ ++    
Sbjct: 588 GLGEMNAGQLWNTTMNPEFRILKQVRIEDASYANEIFEKLMGDDVMPRKDFIKRHAGEVK 647

Query: 800 ALDI 803
            LDI
Sbjct: 648 NLDI 651


>gi|78707345|gb|ABB46478.1| DNA gyrase subunit B [Acholeplasma equifetale]
 gi|78707347|gb|ABB46479.1| DNA gyrase subunit B [Acholeplasma equifetale]
          Length = 588

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 271/581 (46%), Positives = 377/581 (64%), Gaps = 7/581 (1%)

Query: 24  VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83
           V+KRP MYIG T GE GLHH+++E++DN+IDE+L GYAD I + +  D    VSDNGRGI
Sbjct: 1   VRKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYADHIEIEVLKDNVIRVSDNGRGI 59

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143
           P D+H + G  A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W  + I ++G
Sbjct: 60  PVDIHPKTGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSVWYVVEIHKDG 119

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            IYE  +  GI    L   G   N TGT  TF     IF+    ++ +TL+ R+++L+FL
Sbjct: 120 KIYEQKYERGIPAYDLKELGET-NRTGTITTFKADPLIFTETTVYDIETLRTRIQQLAFL 178

Query: 203 NSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           N  + ISL D +      + T  Y GGI  +V +L+++KK +    I  +  +D +++++
Sbjct: 179 NRGITISLSDSRDENHIYQETFKYDGGIIEYVKFLNQNKKTIHPDIIYFEKEQDGVTVEV 238

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM++ D Y  N+  FTNNI   +GG H  G + ALTR I+ Y +      K   ++IG+D
Sbjct: 239 AMQYVDTYTPNIHSFTNNISTTEGGMHEDGYKMALTRVISRYADDMK--AKKDDAIIGED 296

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T+++S+K P+P+F  QTK KL + EVR++      + L  +L E+P +AK IV+K
Sbjct: 297 TREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQVTQEALERFLLENPQQAKSIVEK 356

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           V++A+  R A+R+A++L RRK  LD      KLADC  +DP+KSELF+VEGDSAGGSAKQ
Sbjct: 357 VIEATRARVASRKAKELARRKSPLDQLDFASKLADCRSKDPEKSELFIVEGDSAGGSAKQ 416

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR  E QAILPLRGK+LNVE+AR D ML ++EI  +I A+GTGI  + FDI+KLRYHKI+
Sbjct: 417 GRDSEFQAILPLRGKVLNVEKARIDTMLKNKEIINIIQAIGTGI-SEEFDISKLRYHKIV 475

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           IMTDADVDGAHIRTLLLTFFFR M  LI NG +Y  +PPLY ++ G++++Y   +E L +
Sbjct: 476 IMTDADVDGAHIRTLLLTFFFRHMRPLIENGHIYAAQPPLYKVSYGRNVKYAYSDEELNE 535

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
                     ++ +     +  +      ++   +    I+
Sbjct: 536 ITSKLETKPTLQRYKGLGEMNYEQLWDTTMNPETRTLLQIQ 576



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 1/158 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +   +    ++ N +  I     + +  S      +V      V    +    
Sbjct: 432 VLNVEKARIDTMLKNKEIINIIQAIGTGISEEFDISKLRYHKIVIMTDADVDGAHIRTLL 491

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I +  I       L  +  G  +K       L+ I S      ++QRYK
Sbjct: 492 LTFFFRHMRPLIENGHIYA-AQPPLYKVSYGRNVKYAYSDEELNEITSKLETKPTLQRYK 550

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           GLGEMN  QLW+TT+NP+TR+LL++++ DA +AD +F+
Sbjct: 551 GLGEMNYEQLWDTTMNPETRTLLQIQLDDAIEADQIFT 588


>gi|300853238|ref|YP_003778222.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528]
 gi|300433353|gb|ADK13120.1| DNA gyrase, subunit B [Clostridium ljungdahlii DSM 13528]
          Length = 637

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 294/588 (50%), Positives = 412/588 (70%), Gaps = 7/588 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +  +YD + IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY D 
Sbjct: 3   QEKKQTYDENQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCDK 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV+DNGRG+P  +H +      EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 62  INVIIHKDNSITVTDNGRGMPVGMHHKMKKPTVEVIMTILHAGGKFGGGGYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS   ++ +KRE +I+   F  G + + L + G +  + GT++ F P ++IF 
Sbjct: 122 GASVVNALSEICEVEVKRESHIWRQVFKRGKVASGLDIIGDSE-EHGTKIHFKPDAEIFD 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++YDTL  RLREL+FLN  ++I L D+R  +       Y+GGI++FV+YL+R+K+P+
Sbjct: 181 EIEYDYDTLAQRLRELAFLNKGIKIRLEDERDDKE--EIFHYEGGIKSFVTYLNRNKQPI 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + PI ++G +D+ S+++A+++NDGY EN+  F NNI   +GGTHL+G +SALTR    Y
Sbjct: 239 HKEPIYVEGKKDDYSVEIAIQYNDGYTENIFAFANNIDTVEGGTHLAGFKSALTRVFNDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K    K++ +++ G+D REG T+V+S+K+ DP+F  QTK KL +SEVR +V+S + + 
Sbjct: 299 AKKFGILKENDKNLSGEDIREGLTAVISVKLVDPQFEGQTKTKLGNSEVRGIVDSIMGES 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L+E+P  AK+I+ K L AS  R+AAR+AR+LTRRK +L+  SLPGKLADCS +DP 
Sbjct: 359 LNNFLQENPQVAKMILDKSLMASRAREAARKARELTRRKSILENTSLPGKLADCSSKDPS 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E++LVEGDSAGGSAKQGR+R+ QAILPLRGKI+NVE+ R DK+L  +EI  +ITA G 
Sbjct: 419 ECEIYLVEGDSAGGSAKQGRNRKFQAILPLRGKIMNVEKQRLDKILGYEEIRAMITAFGA 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D FD+NK+RY+KIIIMTDADVDGAHIRTLLLTFFFR M  L+    +YI +PPLY 
Sbjct: 479 GIGKD-FDVNKIRYNKIIIMTDADVDGAHIRTLLLTFFFRYMKELVEKCHVYIAQPPLYR 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI--ELFCDSKGVISKNDLRN 589
           + +GK   Y   ++ L+  L      +           G +    L +
Sbjct: 538 VAKGKKEYYAYSDDELDVLLTEIGGKDSNVDIQRYKGLGEMDSEQLWD 585



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIF-SIGRK--GISMQRYKGLGEMNASQLWETTLNPDT 759
             L  +  G K         LD +   IG K   + +QRYKGLGEM++ QLW+TT+NP+T
Sbjct: 533 PPLYRVAKGKKEYYAYSDDELDVLLTEIGGKDSNVDIQRYKGLGEMDSEQLWDTTMNPET 592

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           R+L++V + D   AD++F+ LMGD+VEPRR FIQEN+     LDI
Sbjct: 593 RTLIQVNVEDTMAADEIFTILMGDKVEPRRNFIQENAKKVVNLDI 637


>gi|295401842|ref|ZP_06811806.1| DNA topoisomerase IV, B subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111016|ref|YP_003989332.1| DNA topoisomerase IV subunit beta [Geobacillus sp. Y4.1MC1]
 gi|294976096|gb|EFG51710.1| DNA topoisomerase IV, B subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216117|gb|ADP74721.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y4.1MC1]
          Length = 656

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 260/593 (43%), Positives = 378/593 (63%), Gaps = 16/593 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L GY + I V +
Sbjct: 8   EYNDDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGYGNYILVKI 66

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + D S TV D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGLHGVG SVV
Sbjct: 67  HKDNSVTVLDEGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           NALS WL + I R+G IY+  F N G     L   G   N TGT + F P   IFS   F
Sbjct: 126 NALSEWLVVTIHRDGFIYQQRFENGGKPVTTLEKIG-TTNKTGTIIQFKPDPAIFSTTTF 184

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           NY+TL  RLRE +FL   ++I LID+R+         Y+ GI+AFV YL+  K  L    
Sbjct: 185 NYETLSERLRESAFLLKGLKIELIDERTG--MSDVFHYENGIKAFVEYLNEDKDVLHP-V 241

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +  +G ++ I ++ A ++NDGY ENVL F NN+  KDGGTH +G ++A+TR    Y  K+
Sbjct: 242 VYFEGEQNGIEVEFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARKN 301

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V++ V++ L+
Sbjct: 302 GLLKEKDKNLEGTDIREGLSAIVSVRIPENLLQFEGQTKGKLGTSEARSAVDAIVSEHLT 361

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPK 423
            +L+E+P  + +++KK + A   R+AAR+AR+   + +K       L GKL     R+P+
Sbjct: 362 YFLQENPDVSTMLIKKAIRAYQAREAARKAREEARSGKKRKGKETVLSGKLTPAQSRNPQ 421

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +L ++EI T+I A+G 
Sbjct: 422 KNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADILKNEEINTIIHAIGG 481

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+G   F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY 
Sbjct: 482 GVG-PDFSLDDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYK 540

Query: 544 IT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           ++    + + ++Y   +  L++          ++ +     + ++      ++
Sbjct: 541 VSKGSGKKEIVEYAWTDAQLKEITKKLGKGYTVQRYKGLGEMNAEQLWETTMN 593



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   ++ I       +     N D ++           +    
Sbjct: 455 VINTEKAKLADILKNEEINTIIHAIGGGVGPDFSLDDINYDKVIIMTDADTDGAHIQVLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI--TGPCSL-LDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K +I         L  I     KG ++Q
Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKVSKGSGKKEIVEYAWTDAQLKEITKKLGKGYTVQ 574

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 575 RYKGLGEMNAEQLWETTMNPETRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIEAN 632


>gi|62866002|gb|AAY17151.1| DNA gyrase B [Borrelia turicatae]
          Length = 634

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 276/584 (47%), Positives = 409/584 (70%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NSDNSVTVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+GN ++ ++  GI  + + + G +  + GT+VTFL  S+IF   +++
Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVGVSS-NRGTKVTFLADSEIFETLEYD 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ DKR  + R +  +++GGI+AFV ++  + K +   P 
Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDKRLGKERFLEFYFEGGIKAFVDFITNNSKNIQSEPY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G+ D++ + + ++W +GY +N+L F NNI  ++GGTH++G +S   + ++   + S 
Sbjct: 240 FIEGTYDDVIVSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKAMSEAFKDSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++  DD +EG T+V+SIK+P+P+F  QTK KL +S ++ +VE+ V++ L   +
Sbjct: 300 ISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVHNELLKVI 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             + LE  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 VNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G++
Sbjct: 420 IVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKN 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI NG +YI  PPLY I    
Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPPLYKIKYEN 538

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
           S+ Y  D+   E +L +       +         G ++   L  
Sbjct: 539 SVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWE 582



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRK-GISM 736
             F F    + I +  +    +  L  I   + +          +  +    G++  IS+
Sbjct: 508 LTFFFRYMRELIDNGHVY-IAMPPLYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISL 566

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT+NP TR +  ++I DA QA+++F  LMGD+VEPRREFI++N+
Sbjct: 567 QRYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAENIFVTLMGDDVEPRREFIEQNA 626

Query: 797 LP-SALDI 803
           L    LD+
Sbjct: 627 LDVVNLDV 634


>gi|145592574|ref|YP_001156871.1| DNA gyrase, B subunit [Salinispora tropica CNB-440]
 gi|145301911|gb|ABP52493.1| DNA gyrase subunit B [Salinispora tropica CNB-440]
          Length = 719

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 265/548 (48%), Positives = 362/548 (66%), Gaps = 10/548 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A+SI +L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE+L G+ D I V
Sbjct: 77  KQEYGAESITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEALAGHCDTIDV 135

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DG   V+DNGRG P D H +      EV +T LHAGGKF+ K+Y VSGGLHGVGVS
Sbjct: 136 VLLADGGVRVTDNGRGFPVDPHPKLKKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVS 195

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + I+++G ++  S+ +     PL   G + + TG+ V+F P   +F    
Sbjct: 196 VVNALSTRMAVEIQKDGYVWRQSYTDSKP-TPLEK-GESTDATGSAVSFWPDPRVFETVA 253

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKK 241
           F++ T+  RL+E++FLN  + I  +D+R  E      RE+T  Y+GGI  FV +L+  K 
Sbjct: 254 FDFQTIYRRLQEMAFLNRGLTIHFLDERVDEGDDGKMREVTFCYQGGIADFVRHLNASKT 313

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + +S +      D +S+++AM+WN+ Y E+V  F NNI   +GGTH  G RSALT  I 
Sbjct: 314 SIHKSVVEFGTEEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVIN 373

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N
Sbjct: 374 RYGA-EKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCN 432

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  WL+ +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   D
Sbjct: 433 EWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSMPGKLADCQSTD 492

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P++ E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITAL
Sbjct: 493 PRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITAL 552

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGI  D FDI KLRYHKI++M DADVDG HI+TLLLT  FR M  L+  G +Y+  PPL
Sbjct: 553 GTGI-HDDFDIEKLRYHKIVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPPL 611

Query: 542 YGITRGKS 549
           Y I   + 
Sbjct: 612 YKIKWNRK 619



 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMN  +LWETT+NP TR+L +V + DA+ AD+LFS LMG++VE RR FIQ N
Sbjct: 651 IQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAATADELFSVLMGEDVEARRSFIQRN 710

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 711 AKDVRFLDI 719


>gi|172035674|ref|YP_001802175.1| DNA gyrase subunit B [Cyanothece sp. ATCC 51142]
 gi|171697128|gb|ACB50109.1| DNA gyrase B subunit [Cyanothece sp. ATCC 51142]
          Length = 642

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 287/636 (45%), Positives = 405/636 (63%), Gaps = 9/636 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S+Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I
Sbjct: 2   TTKSNYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +N DGS TV+D+GRGIPTD+H   G SA E +MT LHAGGKF    YKVSGGLHGVG
Sbjct: 61  EIDINPDGSVTVTDDGRGIPTDIHPSTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS W+ +++ R+  ++   +  GI    L       + TGT ++FLP   IF+V
Sbjct: 121 VSVVNALSEWVIVKVWRDDEVHTQRYERGIPITNLETKPDKNHSTGTSISFLPDKKIFTV 180

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+Y TL  RLREL++LN+ V+I+  D R  EP   +  Y+GGI+ +V+Y+ R K PL
Sbjct: 181 GIEFDYSTLAGRLRELAYLNAGVRITFTDNRKEEPHVESYCYEGGIKEYVTYMCRDKDPL 240

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            Q  I + G ++   +++A +   D Y +N+L F NNI   DGGTHL GL++ LTR + +
Sbjct: 241 HQDIIFVSGEKNGTQVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNN 300

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
              K    K +  ++ G++ REG T V+S+K+P+P F  QTK KL ++EVR +V+S V +
Sbjct: 301 VARKRNKLKDNDANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGE 360

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +LE +P  A  I++K + A    +AARRAR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 361 VLTEYLEFNPHVADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDP 420

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           ++SE+FLVEGDSAGGSAKQGR R  QAILPLRGKI+N+E+    ++  + EI +LITALG
Sbjct: 421 EESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQSLITALG 480

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  + FD  +LRYH+I+IMTDADVDGAHIRTLLLTFF+R   +L+  G++YI  PPLY
Sbjct: 481 LGIKGEEFDPAQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYVYIACPPLY 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            + RG++  Y  +E  L++++ +   +           G +    L +       ++   
Sbjct: 541 KVERGRNHVYCYNERQLQEHINSLPANANYSIQRFKGLGEMMPTQLWDT-----TMNPET 595

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +       +   E   I  +   +        + + 
Sbjct: 596 RRMKQVEIEDAAEADRIFTILMGDRVAPRREFIETY 631



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 132/331 (39%), Gaps = 32/331 (9%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDY 562
           DA++ G ++R  L      ++P     G     +    + GI      + + +      +
Sbjct: 312 DANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFNPH 371

Query: 563 LINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQAV 617
           + +  + + ++ F  ++      +L  R  + ++  +   + D         + F+ +  
Sbjct: 372 VADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDPEESEIFLVEGD 431

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDIL 663
            +G    +       ++       +N       + +  +                  D  
Sbjct: 432 SAGGSAKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQSLITALGLGIKGEEFDPA 491

Query: 664 VKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTI--LSLICNGDKIKI 716
             R  R V      ++G+ I +    F  +Y+R   ++            +    + +  
Sbjct: 492 QLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYVYIACPPLYKVERGRNHVYC 551

Query: 717 TGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                L + I S+      S+QR+KGLGEM  +QLW+TT+NP+TR + +V+I DA++AD 
Sbjct: 552 YNERQLQEHINSLPANANYSIQRFKGLGEMMPTQLWDTTMNPETRRMKQVEIEDAAEADR 611

Query: 776 LFSRLMGDEVEPRREFIQENS--LPSA-LDI 803
           +F+ LMGD V PRREFI+     L    LDI
Sbjct: 612 IFTILMGDRVAPRREFIETYGPKLDLNDLDI 642


>gi|296531195|dbj|BAJ08046.1| DNA gyrase subunit B [Streptococcus intermedius]
          Length = 648

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/622 (44%), Positives = 406/622 (65%), Gaps = 6/622 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +  +Q   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A
Sbjct: 5   TKEMQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFA 63

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVSGGLH
Sbjct: 64  THIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGYKVSGGLH 123

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F P  +I
Sbjct: 124 GVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGQVVADLKIIGET-DRTGTTVHFTPDPEI 182

Query: 182 FSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y++ +K
Sbjct: 183 FTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLEQTKDYHYEGGIASYVQYINENK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + ++PI   G  D+I++++A+++  GYHE V+ F NNI   +GGTH  G R+ALTR I
Sbjct: 243 DVIFENPIYTDGEMDDITVEVAIQYTTGYHETVMSFANNIHTHEGGTHEQGFRTALTRVI 302

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     
Sbjct: 303 NDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLF 362

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++  S +L E+P  AK I++K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  
Sbjct: 363 SEAFSDFLLENPAVAKKIIEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSN 422

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA
Sbjct: 423 DPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTA 482

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTG G D FD+NK RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP
Sbjct: 483 MGTGFGAD-FDVNKTRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPP 541

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           +YG+  G  ++     +   +      L+ E      SK  I +      +DD    +  
Sbjct: 542 IYGVKVGSEVKEYI--QPGVNQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETT 599

Query: 601 IKDFYPNHDKTFIEQAVISGVF 622
           +   +    +  ++ A  +   
Sbjct: 600 MNPEHRLMARVSVDDAAEADKI 621



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   S+QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 573 SEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 632

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 633 RREFIEENAVYSTLDV 648


>gi|119953224|ref|YP_945433.1| DNA gyrase subunit B [Borrelia turicatae 91E135]
 gi|119861995|gb|AAX17763.1| DNA gyrase subunit B [Borrelia turicatae 91E135]
          Length = 639

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 276/584 (47%), Positives = 409/584 (70%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 7   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 65

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 66  NSDNSVTVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+GN ++ ++  GI  + + + G +  + GT+VTFL  S+IF   +++
Sbjct: 126 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVGVSS-NRGTKVTFLADSEIFETLEYD 184

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ DKR  + R +  +++GGI+AFV ++  + K +   P 
Sbjct: 185 FETLSKRLRELAFLNDKIRISIEDKRLGKERFLEFYFEGGIKAFVDFITNNSKNIQSEPY 244

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G+ D++ + + ++W +GY +N+L F NNI  ++GGTH++G +S   + ++   + S 
Sbjct: 245 FIEGTYDDVIVSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKAMSEAFKDSK 304

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++  DD +EG T+V+SIK+P+P+F  QTK KL +S ++ +VE+ V++ L   +
Sbjct: 305 ISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVHNELLKVI 364

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             + LE  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 365 GNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIY 424

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G++
Sbjct: 425 IVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKN 484

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI NG +YI  PPLY I    
Sbjct: 485 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPPLYKIKYEN 543

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
           S+ Y  D+   E +L +       +         G ++   L  
Sbjct: 544 SVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWE 587



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRK-GISM 736
             F F    + I +  +    +  L  I   + +          +  +    G++  IS+
Sbjct: 513 LTFFFRYMRELIDNGHVY-IAMPPLYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISL 571

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT+NP TR +  ++I DA QA+++F  LMGD+VEPRREFI++N+
Sbjct: 572 QRYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAENIFVTLMGDDVEPRREFIEQNA 631

Query: 797 LP-SALDI 803
           L    LD+
Sbjct: 632 LDVVNLDV 639


>gi|62865988|gb|AAY17144.1| DNA gyrase B [Borrelia turicatae]
 gi|62865990|gb|AAY17145.1| DNA gyrase B [Borrelia turicatae]
 gi|62865992|gb|AAY17146.1| DNA gyrase B [Borrelia turicatae]
 gi|62865994|gb|AAY17147.1| DNA gyrase B [Borrelia turicatae]
 gi|62865996|gb|AAY17148.1| DNA gyrase B [Borrelia turicatae]
 gi|62865998|gb|AAY17149.1| DNA gyrase B [Borrelia turicatae]
 gi|62866000|gb|AAY17150.1| DNA gyrase B [Borrelia turicatae]
          Length = 634

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 276/584 (47%), Positives = 409/584 (70%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NSDNSVTVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+GN ++ ++  GI  + + + G +  + GT+VTFL  S+IF   +++
Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVGVSS-NRGTKVTFLADSEIFETLEYD 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ DKR  + R +  +++GGI+AFV ++  + K +   P 
Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDKRLGKERFLEFYFEGGIKAFVDFITNNSKNIQSEPY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G+ D++ + + ++W +GY +N+L F NNI  ++GGTH++G +S   + ++   + S 
Sbjct: 240 FIEGTYDDVIVSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKAMSEAFKDSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++  DD +EG T+V+SIK+P+P+F  QTK KL +S ++ +VE+ V++ L   +
Sbjct: 300 ISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVHNELLKVI 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             + LE  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 GNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G++
Sbjct: 420 IVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKN 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI NG +YI  PPLY I    
Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPPLYKIKYEN 538

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
           S+ Y  D+   E +L +       +         G ++   L  
Sbjct: 539 SVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWE 582



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRK-GISM 736
             F F    + I +  +    +  L  I   + +          +  +    G++  IS+
Sbjct: 508 LTFFFRYMRELIDNGHVY-IAMPPLYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISL 566

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT+NP TR +  ++I DA QA+++F  LMGD+VEPRREFI++N+
Sbjct: 567 QRYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAENIFVTLMGDDVEPRREFIEQNA 626

Query: 797 LP-SALDI 803
           L    LD+
Sbjct: 627 LDVVNLDV 634


>gi|319939445|ref|ZP_08013805.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV]
 gi|319811431|gb|EFW07726.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV]
          Length = 648

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 280/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+  +      YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MSEENKELQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFATHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGHVVADLEIIGET-DRTGTTVHFTP 178

Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLEQTKDYHYEGGIASYVQYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFENPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  DP ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNDPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++     +   +      L+ E      SK  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEVKEYI--QPGANQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMNPEHRLMARVSVDDAAEADKI 621



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   S+QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 573 SEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 632

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 633 RREFIEENAVYSTLDV 648


>gi|315644305|ref|ZP_07897475.1| DNA gyrase, B subunit [Paenibacillus vortex V453]
 gi|315280680|gb|EFU43969.1| DNA gyrase, B subunit [Paenibacillus vortex V453]
          Length = 634

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 293/620 (47%), Positives = 416/620 (67%), Gaps = 16/620 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD + IQ+L+GL+AV+KRP MYIG T    GLHH+++EV+DN+IDE++ G  D I
Sbjct: 1   MNQPTYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEVVDNSIDEAMAGICDHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + ++ D S TV DNGRGIP   + +   S  EV+MT LHAGGKF    YKVSGGLHGVG
Sbjct: 60  EIIVHEDNSVTVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALSS + +++KR+G+IY+  +  G+    + V G + ++ GT VTFLP  +IF  
Sbjct: 120 VSVVNALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGDS-DEHGTTVTFLPDPEIFTE 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              + Y TL  R+REL+FLN  + ++L D+R+         Y+GGI  +V +L+  K+ L
Sbjct: 179 TTVYEYTTLLTRIRELAFLNKGIALTLTDERTG--ASDFFKYEGGIIEYVKFLNEKKEAL 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + PI ++GSRDNI +++++++ND Y EN+  F NNI   +GGTH SG +SALTR I  Y
Sbjct: 237 HEDPIYVEGSRDNIQVEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDY 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +SEVR +VES   + 
Sbjct: 297 ARKTGMIKDNNNNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESLFAEK 356

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L+E+P  ++ I++K L AS  R+AAR+AR++TRRK  L++++LPGKLADCS +D  
Sbjct: 357 LQEFLQENPSVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDAS 416

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++LS+ EI  +ITALGT
Sbjct: 417 ISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGT 476

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  + FD++K RYHKIIIMTDADVDGAHIRTLLLTFF+R M  L+  G++YI +PPL+ 
Sbjct: 477 GI-AEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFK 535

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           + R K ++Y   E+  ++ +     + +I        G ++   L          +  + 
Sbjct: 536 VERNKVIRYAGSEKERDEIIKEFGENVKINVQRYKGLGEMNAGQLW---------ETTMD 586

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  IE A+++   
Sbjct: 587 PESRTMLQVTIEDAILADTL 606



 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 4/199 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +  +     + +  S      ++  
Sbjct: 438 RHFQAIL--PLRGKILNVEKARLDRILSNAEIRAIITALGTGIAEDFDLSKARYHKIIIM 495

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    K + +  I      +  +  N             + I
Sbjct: 496 TDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKVERNKVIRYAGSEKERDEII 555

Query: 727 FSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
              G    I++QRYKGLGEMNA QLWETT++P++R++L+V I DA  AD LF  LMGD V
Sbjct: 556 KEFGENVKINVQRYKGLGEMNAGQLWETTMDPESRTMLQVTIEDAILADTLFDTLMGDNV 615

Query: 786 EPRREFIQENSLPS-ALDI 803
           EPRR+FIQE++     LD+
Sbjct: 616 EPRRDFIQEHAKTVRNLDV 634


>gi|319893736|ref|YP_004150611.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03]
 gi|317163432|gb|ADV06975.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03]
 gi|323463206|gb|ADX75359.1| DNA gyrase, B subunit [Staphylococcus pseudintermedius ED99]
          Length = 640

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 292/592 (49%), Positives = 402/592 (67%), Gaps = 6/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D   + +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GY
Sbjct: 1   MADVNNSENYGASQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  ADNIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++ + R+G I+  ++  G+    L   G   + TGT + F     
Sbjct: 120 HGVGSSVVNALSETLEVYVHRDGRIHHQAYHKGVPAFDLKQVGDT-DQTGTVIRFKADGT 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238
           IF     +NY+TLQ R+REL+FLN  ++I+L D+R  E        Y+GGI+++V  ++ 
Sbjct: 179 IFQETTVYNYETLQKRIRELAFLNKGIRITLTDERDEENVREDSYHYEGGIKSYVELINE 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+PL   P+ +  +RD+I +++A+++N G+  N+L + NNI   +GGTH  G + ALTR
Sbjct: 239 NKEPLHDEPVYVHQTRDDIEVEIALQYNSGFATNLLTYANNIHTYEGGTHEDGFKRALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y  +S   K+DK  + G+D REG T+V+SIK  DP+F  QTK KL +SEVR +V+ 
Sbjct: 299 VLNNYGTQSKLIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDR 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L EHP  A+IIV+K + AS  R AA++AR++TRRK  LDI+SLPGKLADCS
Sbjct: 359 VFSELFERFLYEHPQVARIIVEKGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SE+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR DK+L++ EI  ++
Sbjct: 419 SKDPSESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDKILNNNEIRQMV 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PPLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 538 PPLYKLTQGKQKYYVFNDRELDKLKEKLNPTPKWSIARYKGLGEMNADQLWE 589



 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 22/182 (12%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690
             RL+ I   +E          G     DI   R  + V      ++G+ I +    +  
Sbjct: 462 KARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 521

Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRK-----GISMQRYK 740
           R     IE  Y+ I       L     K  +      LD +     K       S+ RYK
Sbjct: 522 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKE---KLNPTPKWSIARYK 577

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800
           GLGEMNA QLWETT+NP+ R++L+V + DA +AD  F  LMGD VE RR+FI++N++ + 
Sbjct: 578 GLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEMLMGDVVENRRQFIEDNAVYAN 637

Query: 801 LD 802
           LD
Sbjct: 638 LD 639


>gi|281491407|ref|YP_003353387.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis KF147]
 gi|281375141|gb|ADA64657.1| DNA gyrase, subunit B [Lactococcus lactis subsp. lactis KF147]
          Length = 651

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 280/629 (44%), Positives = 415/629 (65%), Gaps = 12/629 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MNEENKNLEMLADEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASHIEVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + ++G  Y   +  G++ + L + G   +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTVLDVTVHKDGQKYYQEYHRGLVGDDLKIIGET-DRRGTTVHF 178

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFV 233
           +P  +IF+   +F++D L  R+REL+FLN  ++ISL DKR   E  E+   Y+GGI+++V
Sbjct: 179 VPDPEIFTETVEFDFDKLATRVRELAFLNRGLRISLTDKREGNEKNEVHFHYEGGIQSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+ +K  + +  I  +G  D I++++AM++ D YH  V+ F NNI   +GGTH  G R
Sbjct: 239 EYLNENKTVIFEPAIFTEGEMDGIAVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I +Y +++   K+++ ++ GDD REG T+V+S+K P+P+F  QTK KL +SEV 
Sbjct: 299 TALTRVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVT 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V     + L+ ++ E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGK
Sbjct: 359 GIVNKLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++E
Sbjct: 419 LADCSSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +L TA+GTG G D +D++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G+
Sbjct: 479 IRSLFTAMGTGFGAD-YDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGY 537

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PP+YGI  G   +        ++  + ++L+   +     K  + +      +DD
Sbjct: 538 VYIAQPPIYGIKVGSETKEYIQPGENQEKDLQEALARWAQGRT--KPTVQRYKGLGEMDD 595

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               +  +   +    +  +E A  +   
Sbjct: 596 HQLWETTMDPEHRLMARVSVEDAAEADKI 624



 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
            I  G+  +       L   ++ GR   ++QRYKGLGEM+  QLWETT++P+ R + RV 
Sbjct: 557 YIQPGENQE-KDLQEALAR-WAQGRTKPTVQRYKGLGEMDDHQLWETTMDPEHRLMARVS 614

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           + DA++AD +F  LMGD VEPRREFI+ N+  S +D
Sbjct: 615 VEDAAEADKIFDMLMGDRVEPRREFIENNAQYSTID 650


>gi|15672887|ref|NP_267061.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403]
 gi|12723837|gb|AAK05003.1|AE006324_6 DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403]
 gi|326406451|gb|ADZ63522.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis CV56]
          Length = 651

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 281/629 (44%), Positives = 415/629 (65%), Gaps = 12/629 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MNEENKNLEMLADEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASHIEVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + ++G  Y   +  G++ + L + G   +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTVLDVTVHKDGQKYYQEYHRGLVGDDLKIIGET-DRRGTTVHF 178

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFV 233
           +P  +IF+   +F++D L  R+REL+FLN  ++ISL DKR   E  E+   Y+GGI+++V
Sbjct: 179 VPDPEIFTETVEFDFDKLATRVRELAFLNRGLRISLTDKREGNEKNEVHFHYEGGIQSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+ +K  + +  I  +G  D I++++AM++ D YH  V+ F NNI   +GGTH  G R
Sbjct: 239 EYLNENKTVIFEPAIFTEGEMDGIAVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFR 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I +Y +++   K+++ ++ GDD REG T+V+S+K P+P+F  QTK KL +SEV 
Sbjct: 299 TALTRVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVT 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V     + L+ ++ E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGK
Sbjct: 359 GIVNKLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++E
Sbjct: 419 LADCSSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +L TA+GTG G D +D++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G+
Sbjct: 479 IRSLFTAMGTGFGAD-YDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGY 537

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +YI +PP+YGI  G   +        ++  + ++L+   +     K  + +      +DD
Sbjct: 538 VYIAQPPIYGIKVGSETKEYIQPGENQEKDLQEALARWAQGRT--KPTVQRYKGLGEMDD 595

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               D  +   +    +  +E A  +   
Sbjct: 596 HQLWDTTMDPEHRLMARVSVEDAAEADKI 624



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 2/96 (2%)

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
            I  G+  +       L   ++ GR   ++QRYKGLGEM+  QLW+TT++P+ R + RV 
Sbjct: 557 YIQPGENQE-KDLQEALAR-WAQGRTKPTVQRYKGLGEMDDHQLWDTTMDPEHRLMARVS 614

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           + DA++AD +F  LMGD VEPRREFI+ N+  S +D
Sbjct: 615 VEDAAEADKIFDMLMGDRVEPRREFIENNAQYSTID 650


>gi|121889|sp|P21558|GYRB_HALSQ RecName: Full=DNA gyrase subunit B
 gi|99223|pir||A39135 DNA topoisomerase chain B homolog - Haloferax sp
 gi|149024|gb|AAB09605.1| DNA gyrase beta-subunit [Haloferax lucentense]
 gi|1899004|gb|AAB49900.1| DNA gyrase beta-subunit [Shuttle vector pMDS20]
          Length = 639

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 285/594 (47%), Positives = 385/594 (64%), Gaps = 12/594 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q++ Y A  IQ+L+GL+AV+KRP+MYIG TD   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MS---QDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V L+ DGS +V+DNGRGIP   H++    A EVIMT LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDAIEVALHEDGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGS--AGNDTGTEVTFLP 177
           HGVGV+VVNALSS L++ +K +G ++   F  G               G DTGT + F P
Sbjct: 117 HGVGVTVVNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWP 176

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IF   +F++ TL++RLREL+FLNS V+ISL D+R+ E    T  ++GGI  FV YL+
Sbjct: 177 DDGIFETTEFDFKTLENRLRELAFLNSGVEISLSDERTDESS--TFLFEGGIREFVEYLN 234

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K  L    I      + I +++AM+  D    ++  F NNI  ++GGTHL+G ++ALT
Sbjct: 235 ETKTALHDDVIYYDDESEGIEVEIAMQATDELQGSIHAFANNINTREGGTHLTGFKTALT 294

Query: 298 RQITSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R +  Y             ++ G+D REG T+V+S+K PDP+F  QTK KL +SEVR +V
Sbjct: 295 RVVNDYANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIV 354

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES  +  L  + EE+P  A  I+ K ++A+  R AA++A +LTRRK  L+  SLPGKLAD
Sbjct: 355 ESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLAD 414

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  RDP +SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ R D++L + EI  
Sbjct: 415 CQSRDPSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRA 474

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LITA+G G+G D FDI K RY ++I+MTDADVDGAHIRTLLLT  +R M  LI  G++Y 
Sbjct: 475 LITAIGGGVG-DEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYA 533

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRN 589
            +PPLY +    +     DE   +  +  +   +          G ++ + L +
Sbjct: 534 AQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPTQVQRFKGLGEMNPDQLWD 587



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QR+KGLGEMN  QLW+TT+NP+ R L R+ + DA+ AD +F+ LMGD V PR++FI++
Sbjct: 570 QVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRKQFIKD 629

Query: 795 NSLPSA-LDI 803
           ++  +  +DI
Sbjct: 630 HANDAEWVDI 639


>gi|257876709|ref|ZP_05656362.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC20]
 gi|257810875|gb|EEV39695.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC20]
          Length = 677

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 271/663 (40%), Positives = 383/663 (57%), Gaps = 19/663 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M    + + Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MGLAKKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +V DNGRG+P   H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 60  GNEIDVTIHKDNSISVRDNGRGMPVGTHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSSWL++ I R+G  Y+ SF + G     L   G     TGT VTF P  
Sbjct: 119 HGVGASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDD 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRE +FL   V+ISL D+R  EP      Y+ GI+ FV YL+  
Sbjct: 179 TIFSATRFSYEILAERLRESAFLLKGVKISLTDERGEEPIHEVFLYEEGIKEFVDYLNEE 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L Q  +   G+++ I ++LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+ 
Sbjct: 239 KDTLTQ-VVYFSGTKEAIEVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTK KL +   R+ V+
Sbjct: 298 FNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARNAVD 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + + + L  +L+E+   ++++V+K + A   R+AAR+AR+   T +K     + L GKL 
Sbjct: 358 NVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLLSGKLT 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 418 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 477

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 478 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 536

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    +   ++Y   ++ L            +       G ++ + L    
Sbjct: 537 IALPPLYKVSKGLGKKAVVEYAWTDDELNKLTQKIGKGY-LLQRYKGLGEMNADQLWET- 594

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                +D   +           +          +  +     + S +   L       +K
Sbjct: 595 ----TMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIESHVQFSLEEDGSILDK 650

Query: 652 SWH 654
              
Sbjct: 651 KED 653



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 379 VRKAIKAREAREAARKAREESRTGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG- 718
           D ++           +      F +      I + ++      +  +    G K  +   
Sbjct: 499 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGLGKKAVVEYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 559 WTDDELNKLTQKIGKGYLLQRYKGLGEMNADQLWETTMDPETRTLIRVRIDDAAQAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+ +
Sbjct: 619 TTLMGDKVEPRRKWIESH 636


>gi|313126396|ref|YP_004036666.1| DNA gyrase subunit b [Halogeometricum borinquense DSM 11551]
 gi|312292761|gb|ADQ67221.1| DNA gyrase subunit B [Halogeometricum borinquense DSM 11551]
          Length = 637

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 287/593 (48%), Positives = 388/593 (65%), Gaps = 12/593 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   + S Y A  IQ+L+GL+AV+KRP+MYIG TD   GLHH++YEV+DN+IDE+L GY
Sbjct: 1   MS---RESEYGAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V+++ DGS +V+DNGRGIP D H++    A EVIMT LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDEIGVSVHEDGSVSVTDNGRGIPVDTHEQYDRPAVEVIMTVLHAGGKFDNKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGS--AGNDTGTEVTFLP 177
           HGVGVSVVNALS WL++ IKR+G ++   F  G  D           +  DTGT + F P
Sbjct: 117 HGVGVSVVNALSEWLEVEIKRDGALWRHRFDQGEPDQEAFERVRDLESDEDTGTTIRFKP 176

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             DIF   +F++ TL++RLREL+FLNS V+ISL D  + E        +GGI  FV YL+
Sbjct: 177 DGDIFETLEFDFTTLENRLRELAFLNSGVEISLADDDADEQSSFYF--EGGIREFVRYLN 234

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K  L    I      + I +++AM+  +    ++  F NNI  ++GGTHL+G ++ALT
Sbjct: 235 ETKSTLHDDVIYYDDEDEGIEVEVAMQATEELQGSIHAFANNINTREGGTHLTGFKTALT 294

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +  Y   +        S+ G+D REG T+V+SIK PDP+F  QTK KL +SEVR +VE
Sbjct: 295 RVVNDYARSNNLLDDLD-SLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVE 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S  ++ L  + EE+P  A+ IV K ++A+  R AA++A +LTRRK  L+  +LPGKLADC
Sbjct: 354 SVTHEQLGTYFEENPGTAQAIVMKAVEAAKARRAAKKAEELTRRKSALESTALPGKLADC 413

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
             RDP +SELF+VEGDSAGGSAKQGR R+ QAILP++GKILNVE+ R D++L + E+  L
Sbjct: 414 QSRDPSESELFVVEGDSAGGSAKQGRDRKFQAILPIKGKILNVEKHRLDRILENNEVRAL 473

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITA+G GIG++ FDI+ +RY +II+MTDADVDGAHIRTLLLT  +R M  LI  G++Y  
Sbjct: 474 ITAIGAGIGEE-FDIDDVRYERIILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAA 532

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589
           +PPLY +           EE  +  +  +   +          G ++   L +
Sbjct: 533 QPPLYRVRYRGETYDAMTEEERDRIVEEKCDGNPTQVQRFKGLGEMNPEQLWD 585



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QR+KGLGEMN  QLW+TT+NPD R L R+ I DA+ AD +F+ LMGD VEPR++FI+E
Sbjct: 568 QVQRFKGLGEMNPEQLWDTTMNPDNRVLKRINIEDAAAADRMFNVLMGDAVEPRKQFIKE 627

Query: 795 NSLPSA-LDI 803
           ++  +  +DI
Sbjct: 628 HATEAEWVDI 637


>gi|315925615|ref|ZP_07921825.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621156|gb|EFV01127.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 668

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 303/590 (51%), Positives = 408/590 (69%), Gaps = 4/590 (0%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS+  + +  Y AD IQ+L+GL+AVK+RP MYIG T G  GLHH++YEV+DNAIDE+L G
Sbjct: 30  MSETTKTNHEYGADQIQVLEGLEAVKRRPGMYIGST-GSQGLHHLVYEVVDNAIDEALAG 88

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I V+++ D + TV D+GRGIPT ++ +EG +  E+ +T LHAGGKF    YKVSGG
Sbjct: 89  YCDKIIVSVDKDNAVTVMDDGRGIPTGINHKEGKTGVELALTVLHAGGKFGGGGYKVSGG 148

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L + +K+   +Y  +F +G   + L V G   N TGT++ F P  
Sbjct: 149 LHGVGVSVVNALSEVLTVEVKQNKKVYRQTFEHGNKTSELDVVG-TTNRTGTKIYFKPDP 207

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    ++YD L+HRLREL+FLN  V I+L D+R  + +     Y GGI +++ Y++R+
Sbjct: 208 EIFDTTVYDYDVLEHRLRELAFLNKGVAITLKDERPGQEQTGEYHYAGGIRSYIEYMNRN 267

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K PL       + + D  +++LA ++  GY EN+  + NNI   +GGTHL+G +SALTR 
Sbjct: 268 KDPLYPQITYYEKAMDEYALELAFQYTRGYQENIYSYANNIYTPEGGTHLNGFKSALTRT 327

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y  K+   K++ +++ GDD REG T+V+SIK+ +P+F  QTK KL + EV+ +VE+ 
Sbjct: 328 INNYARKAGLLKQNDKNLSGDDVREGLTAVISIKLLEPQFEGQTKTKLGNPEVKGIVETI 387

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ LS +LEE+P  AK IV+K + AS  R AA+RAR++TRRK  LD  SLPGKLADC E
Sbjct: 388 VNEELSNFLEENPNVAKAIVEKNISASHARMAAKRAREMTRRKSALDATSLPGKLADCRE 447

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SE+F+VEGDSAGGSAK GR    QAILPLRGKILNVE+AR D+ML+S  I  +IT
Sbjct: 448 KDPAQSEIFIVEGDSAGGSAKVGRDSRIQAILPLRGKILNVEKARLDRMLTSDTIKGMIT 507

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG+D FDI K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI +G++YI +P
Sbjct: 508 AFGTGIGED-FDIEKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRGLIDHGYVYIAQP 566

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY ++ GK ++Y  D+  L   L ++  S          G +    L  
Sbjct: 567 PLYKVSWGKHVEYAYDDADLNRRLEDKDRSRVTLQRYKGLGEMDAEQLWE 616



 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           R  +++QRYKGLGEM+A QLWETT+NPDTR++LRV I DA+ AD++F+ LMGD+V+PR+E
Sbjct: 595 RSRVTLQRYKGLGEMDAEQLWETTMNPDTRTMLRVGIEDATYADEIFTMLMGDKVQPRKE 654

Query: 791 FIQENSLPS-ALDI 803
           FI+ N+     LDI
Sbjct: 655 FIERNAKKVQNLDI 668


>gi|332362817|gb|EGJ40611.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK355]
          Length = 649

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYSRGQVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  GF+Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +       +        SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 634 RREFIEENAVYSTLDV 649


>gi|315221787|ref|ZP_07863699.1| DNA gyrase, B subunit [Streptococcus anginosus F0211]
 gi|315189020|gb|EFU22723.1| DNA gyrase, B subunit [Streptococcus anginosus F0211]
          Length = 648

 Score =  578 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 280/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+  +      YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MSEENKELQAEDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFATHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGHVVADLEIIGET-DRTGTTVHFTP 178

Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLEQTKDYHYEGGIASYVQYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFENPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  DP ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNDPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++     +   +      L+ E      SK  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEVKEYI--QPGANQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMNPEHRLMARVSVDDAAEADKI 621



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   S+QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 573 SEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 632

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 633 RREFIEENAVYSTLDV 648


>gi|328945965|gb|EGG40112.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK1087]
          Length = 649

 Score =  578 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYSRGQVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGIEQVKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  GF+Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +       +        SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 634 RREFIEENAVYSTLDV 649


>gi|257884846|ref|ZP_05664499.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,501]
 gi|257820684|gb|EEV47832.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,501]
          Length = 681

 Score =  578 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 272/665 (40%), Positives = 388/665 (58%), Gaps = 18/665 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  + N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKV-NNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GSEIDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G  Y+  F N G  D  L   G      GT V FLP  
Sbjct: 118 HGVGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRE +FL   V+ISL D R  EP +    Y+ GI+ FV YL+  
Sbjct: 178 TIFSTTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+ 
Sbjct: 238 KDTLTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKS 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV+
Sbjct: 297 YNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + +++ +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 NVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY +++G+  + V +    +D    +I +     +       G ++   L     
Sbjct: 536 IALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-- 593

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +D   +           +          +  +     + + +   L       +K 
Sbjct: 594 ---TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKK 650

Query: 653 WHGSI 657
               I
Sbjct: 651 EDTEI 655



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 378 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 498 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 557

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 558 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 616

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 617 VTTLMGDKVEPRRKWIENH 635


>gi|190710587|gb|ACE95124.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
          Length = 627

 Score =  578 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 286/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+DNGRGIP  + K+ G  A EVIMT LHAGGKF    YKVSGGLH V  S
Sbjct: 60  SIEEDNSIRVTDNGRGIPVGIQKKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHDVVAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G +YI +PPL+ I 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGNIYIAQPPLFKIQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +++ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%)

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +      R+  ++K       +   +      + P   E   VEG   G   +       
Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
                  G   N+         ++            G       +      K  I+ DAD
Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306

Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559
            +  G  +R  L      + P+    G           +     +      +++ +  ++
Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366

Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              ++         +  +++       K  +  + L   + D    D  I + Y     +
Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665
               A      + ++   +   + +    RL+ I    E     +        + DI   
Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486

Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           R  +        V    +      F +    + I    I       L  I  G KI+   
Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGNIY-IAQPPLFKIQQGKKIQYAY 545

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+ I +    +    +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ 
Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605

Query: 777 FSRLMGDEVEPRREFIQENSLP 798
           F  LMGD+VEPRR FIQEN+  
Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627


>gi|164510799|emb|CAK18881.1| topoisomerase II subunit B [Staphylococcus intermedius]
          Length = 640

 Score =  578 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 294/592 (49%), Positives = 403/592 (68%), Gaps = 6/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D   + +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GY
Sbjct: 1   MADVNNSENYGASQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  ADNIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++ + R+G I+  ++  G+    L   G   + TGT + F     
Sbjct: 120 HGVGSSVVNALSDTLEVYVHRDGRIHHQAYHKGVPAFDLKQVGDT-DQTGTVIRFKADGT 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238
           IF     +NY+TLQ R+REL+FLN  ++I+L D+R  E        Y+GGI+++V  ++ 
Sbjct: 179 IFQETTVYNYETLQKRIRELAFLNKGIRITLTDERDEENVREDSYHYEGGIKSYVELINE 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+PL + PI +  +RD+I +++A+++N G+  N+L + NNI   +GGTH  G + ALTR
Sbjct: 239 NKEPLHEEPIYVHQTRDDIEVEIALQYNSGFATNLLTYANNIHTYEGGTHEDGFKRALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y  +S   K+DK  + G+D REG T+V+SIK  DP+F  QTK KL +SEVR +V+ 
Sbjct: 299 VLNNYGAQSKLIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDR 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L EHP  A+IIV+K + AS  R AA++AR++TRRK  LDI+SLPGKLADCS
Sbjct: 359 VFSELFERFLFEHPQVARIIVEKGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SE+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR DK+LS+ EI  ++
Sbjct: 419 SKDPSESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDKILSNNEIRQMV 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PPLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 538 PPLYKLTQGKQKYYVFNDRELDKLKEKLNPTPKWSIARYKGLGEMNADQLWE 589



 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/68 (58%), Positives = 54/68 (79%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+ RYKGLGEMNA QLWETT+NP+ R++L+V + DA +AD  F  LMGD VE RR+FI++
Sbjct: 572 SIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEMLMGDVVENRRQFIED 631

Query: 795 NSLPSALD 802
           N++ + LD
Sbjct: 632 NAVYANLD 639


>gi|317128925|ref|YP_004095207.1| DNA topoisomerase IV subunit beta [Bacillus cellulosilyticus DSM
           2522]
 gi|315473873|gb|ADU30476.1| DNA topoisomerase IV, B subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 658

 Score =  578 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 274/662 (41%), Positives = 396/662 (59%), Gaps = 22/662 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q   Y+ DSIQ+L+GL+AV+KRP MYIG TD   GLHH+++E++DN++DE+L GY
Sbjct: 1   MSMK-QPYEYNDDSIQVLEGLEAVRKRPGMYIGSTD-HRGLHHLVFEIVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT++ D S +V DNGRG PT +H   G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GDEITVTIHKDESISVKDNGRGYPTGMHS-TGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+G IY+  F + G     L V GS    TGT V F P  
Sbjct: 118 HGVGASVVNALSEWLEVTIHRDGKIYQQRFEDGGKPVTTLEVIGSTK-KTGTTVHFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDR 238
            IFS   + YDTL  RLRE +FL   ++I L+D + + +  +    Y  G+EAFV YL+ 
Sbjct: 177 SIFSTTTYQYDTLAERLREAAFLLKGLKIELVDARPNKDNDKEVFQYDTGLEAFVEYLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L    +  QG++D+I +D A ++ND + EN+L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 EKEVLHP-VVSFQGTQDDIEVDFAFQYNDAFTENMLSFVNNVRTKDGGTHELGAKTAVTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
            I  +  K    K+  +++ G+D REGFT+++S+++P+   +F  QTK KL +   RS V
Sbjct: 296 IINEHGRKLQLLKERDKNLDGNDIREGFTAIVSVRVPEDKLQFEGQTKGKLGTPVARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S V++ LS +LEE+P  +  ++KK + A+  R+AAR+AR+   + +K     A L GKL
Sbjct: 356 DSIVSEKLSFFLEENPDLSNRLIKKAVKAAQAREAARKAREDARSGKKNKRKDAMLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++PK++EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+   ++ ++EI
Sbjct: 416 TPAQSKNPKRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I A+G  +G D F +  + Y K+IIMTDAD DGAHI+ LLLTFF+R M  L+  G +
Sbjct: 476 RTIIYAIGGDVGAD-FQLEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           YI  PPLY ++    + + ++Y  DE+ L++ +        I+ +    G +    L   
Sbjct: 535 YIALPPLYKVSKGSGKKEKIEYAWDEDGLQEAIQKIGKGYTIQRY-KGLGEMDATQLWET 593

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                 +D   +                      +  +     +   +   LN      E
Sbjct: 594 -----TMDPETRTLVRVKIDDITRAERRVATLMGDKVEPRRKWIERNVQFGLNEETNILE 648

Query: 651 KS 652
             
Sbjct: 649 NE 650



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 5/257 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +    +    +   +     ++  ++  L        SKN  RN +           
Sbjct: 380 KAVKAAQAREAARKAREDARSGKKNKRKDAMLSGKLTPAQSKNPKRNELYLVEGDSAGGS 439

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  K      +   V N E  +  ++    ++   +  I       +     N D 
Sbjct: 440 AKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEIRTIIYAIGGDVGADFQLEDINYDK 499

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---G 718
           ++           +      F +      + + R+      +  +    G K KI     
Sbjct: 500 VIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRVYIALPPLYKVSKGSGKKEKIEYAWD 559

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              L + I  IG KG ++QRYKGLGEM+A+QLWETT++P+TR+L+RVKI D ++A+   +
Sbjct: 560 EDGLQEAIQKIG-KGYTIQRYKGLGEMDATQLWETTMDPETRTLVRVKIDDITRAERRVA 618

Query: 779 RLMGDEVEPRREFIQEN 795
            LMGD+VEPRR++I+ N
Sbjct: 619 TLMGDKVEPRRKWIERN 635


>gi|51317702|gb|AAT99972.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317704|gb|AAT99973.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317706|gb|AAT99974.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317708|gb|AAT99975.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317710|gb|AAT99976.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317712|gb|AAT99977.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317714|gb|AAT99978.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317716|gb|AAT99979.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317718|gb|AAT99980.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317720|gb|AAT99981.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317722|gb|AAT99982.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317724|gb|AAT99983.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|112031371|gb|ABH88158.1| GyrB [Borrelia hermsii]
 gi|112031375|gb|ABH88160.1| GyrB [Borrelia hermsii]
 gi|164564666|gb|ABY61085.1| DNA gyrase B [Borrelia hermsii]
 gi|164564676|gb|ABY61090.1| DNA gyrase B [Borrelia hermsii]
          Length = 634

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 275/584 (47%), Positives = 406/584 (69%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S TV+DNGRGIP D+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NSDNSITVNDNGRGIPIDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L + + R+G +++ ++  GI  + + + G +    GT+VTFL  ++IF   +++
Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIGVSS-ARGTKVTFLADTEIFETLEYD 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ DKRS + + +  +++GGI+AFV Y+  + K +   P 
Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDKRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+GS D++ + + ++W +GY +++L F NNI  ++GGTH++G +S   + ++     S 
Sbjct: 240 FIEGSCDDVIVSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  S+  DD +EG T+V+SIK+P+P+F  QTK KL +S V+ +VE+ V+DGL   +
Sbjct: 300 ISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLRVV 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           +++ LE   I+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 DDNLLEVDTILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPAEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R +QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI NG +YI  PPLY +    
Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKVKYEN 538

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
              Y  D+   E +L +       +         G ++   L  
Sbjct: 539 REHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWE 582



 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG--PCSLLDTIFSIGRK-GISMQ 737
             F F    + I +  +      +  +     +                  G++  +S+Q
Sbjct: 508 LTFFFRYMRELIENGHVYIAMPPLYKVKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT+NP TR +  +KI DA QA+ +F  LMGD+VEPRREFI+ N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLMGDDVEPRREFIEHNAL 627

Query: 798 P-SALDI 803
               LD+
Sbjct: 628 DVVNLDV 634


>gi|295090282|emb|CBK76389.1| DNA gyrase subunit B [Clostridium cf. saccharolyticum K10]
 gi|295115477|emb|CBL36324.1| DNA gyrase subunit B [butyrate-producing bacterium SM4/1]
          Length = 636

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 297/584 (50%), Positives = 401/584 (68%), Gaps = 5/584 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L G+   I V 
Sbjct: 3   SEYSADQIQILEGLEAVRKRPGMYIGSTS-IRGLHHLVYEIVDNSVDEALAGFCSEIDVQ 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N D S TV+DNGRGIP D+ K+ GI A EV+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 62  INADNSITVTDNGRGIPVDIQKKAGIPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186
           VNALS WL++ I ++G+IY   +  G +  PL + G    +  GT VTFLP  +IF    
Sbjct: 122 VNALSEWLEVDIYKDGHIYNQRYERGKVMYPLTIKGDCPADKHGTRVTFLPDKEIFEETV 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YDTL+ RLRE +FL  +++I L D R  + +E T  Y+GGI+ FV+YL+R  + L   
Sbjct: 182 YDYDTLKVRLRETAFLTKNLKIILRDDREEK-QEKTFHYEGGIKEFVTYLNRGGESLYAP 240

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G RDN+ +++AM+ ND Y EN+  F NNI   +GGTHLSG ++ALT     Y  K
Sbjct: 241 VIYCEGVRDNVYVEVAMQHNDSYTENIYTFVNNINTPEGGTHLSGFKTALTNTFNDYARK 300

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K+++ S+ G+D REG T+++S+K+ +P+F  QTK+KL ++E R+ V   V++ L+ 
Sbjct: 301 NKLLKENEPSLSGEDIREGLTAIISVKLEEPQFEGQTKQKLGNTEARAAVAGIVSEQLTY 360

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LE++P  AKII +K + A   R AARRAR++TRRK  LD  +LPGKLADCS+++P+  E
Sbjct: 361 FLEQNPGVAKIISEKSILAQRARAAARRAREMTRRKSALDGLALPGKLADCSDKNPENCE 420

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAK+ RS+ NQAILPLRGKILNVE+AR DK+ ++ EI ++ITA GTGI 
Sbjct: 421 IYLVEGDSAGGSAKEARSKANQAILPLRGKILNVEKARLDKIYANAEIRSMITAFGTGIH 480

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY I +
Sbjct: 481 ED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKIEK 539

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            K + Y   +  L   L      +          G +    L  
Sbjct: 540 NKRIWYAYSDAELNSILSEIGRDQNNKIQRYKGLGEMDAEQLWE 583



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 16/181 (8%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK- 690
             RL+ I   +E          G   + DI   R  + +      ++G+ I +    +  
Sbjct: 456 KARLDKIYANAEIRSMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIY 515

Query: 691 RIFSNRIEENY----LTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGE 744
           R     I++ Y       L  I    +I      + L++I S   +  +  +QRYKGLGE
Sbjct: 516 RFMPELIKQGYVYLAQPPLYKIEKNKRIWYAYSDAELNSILSEIGRDQNNKIQRYKGLGE 575

Query: 745 MNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           M+A QLWETT++P+ R LLRV + + +  + D  F+ LMGD+VEPRREFI+ N+    LD
Sbjct: 576 MDAEQLWETTMDPERRILLRVTMDEETTSEVDLTFTTLMGDQVEPRREFIEANAKYGTLD 635

Query: 803 I 803
           I
Sbjct: 636 I 636


>gi|261368839|ref|ZP_05981722.1| DNA gyrase, B subunit [Subdoligranulum variabile DSM 15176]
 gi|282569109|gb|EFB74644.1| DNA gyrase, B subunit [Subdoligranulum variabile DSM 15176]
          Length = 662

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 270/605 (44%), Positives = 381/605 (62%), Gaps = 23/605 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   + +Y    IQ+L+GL+AV+KRP MYIG T G SGLHH++YE++DN+IDE+L GY  
Sbjct: 12  ETATDHAYGGAQIQVLEGLEAVRKRPGMYIGST-GPSGLHHLVYEIVDNSIDEALAGYCT 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120
            I VT+       VSDNGRGIP D+  + GI A  V+ T LHAGGKF      YKV+GGL
Sbjct: 71  HIEVTIKPGNIIQVSDNGRGIPVDIQPKLGIPAVTVVYTVLHAGGKFGGEDSGYKVAGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL +R++R+G  YE SF  G  D  L   GSA   TGT V F P  +
Sbjct: 131 HGVGASVVNALSEWLTVRVRRDGAEYEQSFQRGKPDGDLKKIGSAA-STGTLVIFKPDPE 189

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------EPREITMFYKG 227
           +F     + Y+TL  RLRE +FLN+ V+I+L D+R              + R  TM Y+G
Sbjct: 190 MFQETTQYRYETLLKRLREEAFLNAGVRITLTDERPESDRPAEEKGPENDGRSETMCYEG 249

Query: 228 GIEAFVS--YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND-GYHENVLCFTNNIPQKD 284
           GI +FVS     R   PL    + ++G       ++A+++ D  Y+E +L F NN+   +
Sbjct: 250 GIRSFVSYLCERRDLTPLTPQVMYMKGEGQGAVAEVALQYYDNSYNELILSFANNVHTPE 309

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH  G + ALTR +  Y       K    ++ G D REG  +V+S+K+ + +F  QTK
Sbjct: 310 GGTHEEGFKLALTRVLNEYGRAKGILKDKDENLSGPDAREGIIAVVSVKLQEAQFEGQTK 369

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++ ++ +V   V   L+ + EE+P  AK I++K   A+  R AA++ARDL RRK  
Sbjct: 370 AKLGNTFIKGLVNGVVYKALTEYFEENPAVAKAILEKATQAARARAAAKKARDLVRRKSA 429

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+   +PGKLADC E+DP K+ELF+VEGDSAGGSAK GR    QAILPL GK+LNVE+AR
Sbjct: 430 LESNRMPGKLADCHEKDPSKTELFIVEGDSAGGSAKMGRDSNIQAILPLWGKMLNVEKAR 489

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D++  + ++  ++TALGTGIG D FDI+K+RYHKI IM DADVDG+HI TL+LTFFFR 
Sbjct: 490 ADRIYGNDKLMPVVTALGTGIG-DEFDISKVRYHKIFIMADADVDGSHICTLMLTFFFRY 548

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           M  LI +G++Y+ +PPL+ + +G++++Y  +++ ++  +++  +           G ++ 
Sbjct: 549 MRPLIEHGYVYVAQPPLFKLQKGQTVKYAYNDDEMK--VLSAEMPGAKVNRYKGLGEMNP 606

Query: 585 NDLRN 589
           + L  
Sbjct: 607 DQLWE 611



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 56/71 (78%)

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           G  + RYKGLGEMN  QLWETT+NPD R ++++KI DA +AD+ FS LMG++VEPRR+FI
Sbjct: 592 GAKVNRYKGLGEMNPDQLWETTMNPDNRVIVQIKIEDAERADEAFSILMGEQVEPRRQFI 651

Query: 793 QENSLPSALDI 803
            +N+  + LD+
Sbjct: 652 VKNAKFANLDV 662


>gi|257878031|ref|ZP_05657684.1| gram positive topoisomerase IV [Enterococcus faecium 1,230,933]
 gi|257881183|ref|ZP_05660836.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,502]
 gi|257889770|ref|ZP_05669423.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,410]
 gi|257892293|ref|ZP_05671946.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,408]
 gi|258616477|ref|ZP_05714247.1| DNA topoisomerase IV subunit B [Enterococcus faecium DO]
 gi|260559081|ref|ZP_05831267.1| gram positive topoisomerase IV [Enterococcus faecium C68]
 gi|257812259|gb|EEV41017.1| gram positive topoisomerase IV [Enterococcus faecium 1,230,933]
 gi|257816841|gb|EEV44169.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,502]
 gi|257826130|gb|EEV52756.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,410]
 gi|257828672|gb|EEV55279.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,408]
 gi|260074838|gb|EEW63154.1| gram positive topoisomerase IV [Enterococcus faecium C68]
          Length = 681

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 272/665 (40%), Positives = 388/665 (58%), Gaps = 18/665 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  + N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKV-NNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GSEIDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G  Y+  F N G  D  L   G      GT V FLP  
Sbjct: 118 HGVGASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRE +FL   V+ISL D R  EP +    Y+ GI+ FV YL+  
Sbjct: 178 TIFSTTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+ 
Sbjct: 238 KDTLTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKS 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV+
Sbjct: 297 YNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + +++ +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 NVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY +++G+  + V +    +D    +I +     +       G ++   L     
Sbjct: 536 IALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-- 593

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +D   +           +          +  +     + + +   L       +K 
Sbjct: 594 ---TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKK 650

Query: 653 WHGSI 657
               I
Sbjct: 651 EDTEI 655



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 378 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 498 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 557

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 558 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 616

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 617 VTTLMGDKVEPRRKWIENH 635


>gi|320451329|ref|YP_004203425.1| DNA gyrase subunit B [Thermus scotoductus SA-01]
 gi|320151498|gb|ADW22876.1| DNA gyrase, subunit B [Thermus scotoductus SA-01]
          Length = 635

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 276/586 (47%), Positives = 368/586 (62%), Gaps = 8/586 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA +I++LKGL+ V+ RP+MYIG T G  G HH+  E+LDNA+DE+L GYA  I  TL
Sbjct: 2   SYDASAIKVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEIVTTL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS TV DNGRGIP DL  EEG  A EVI T LH+GGKF+  +YKVSGGLHGVG SVV
Sbjct: 61  NPDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYTTLHSGGKFDSSAYKVSGGLHGVGASVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDF 187
           NALS W  + + REG  + ++F  G +  PL V G A    TGT VTF P   IF  Q F
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLAVVGPAPKGKTGTRVTFKPDPLIFGNQAF 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +   ++ RLRE+S+L + +++   D      RE     KGG+ +F   L   ++ L + P
Sbjct: 181 DPSKIRARLREVSYLVAGLRLVFKDLIHG--REDVYLDKGGVASFAKALAEGEELLYEKP 238

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             ++G    + +++ +    GY+  +L + N IP +DGGTHL+  +SA +R +  Y +K+
Sbjct: 239 FLLKGQEGEVEVEVGLIHTKGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKA 298

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +K+      GDD  EG  +V+S+K+P P+F  QTK KL++ E  S V   V +     
Sbjct: 299 GLNKEKGPQPTGDDLLEGLYAVVSVKLPQPQFEGQTKGKLLNPEAGSAVSQVVYEKFLEI 358

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEE+P  AK I +K L A+  R+AAR+AR+L RR+  L+   LPGKLADC   +P+++EL
Sbjct: 359 LEENPRIAKTIYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADCQTENPEEAEL 418

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG- 486
           F+VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K L + E+  ++ A+G GIG 
Sbjct: 419 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVAAIGVGIGG 478

Query: 487 ---QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
              +  FD+  LRYHKIIIMTDADVDG+HIRTLLLTFF+R M  LI  G +YI +PPLY 
Sbjct: 479 TGDEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYR 538

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +  GK ++Y+  +E L   L                G ++   L  
Sbjct: 539 LQVGKKVEYLYSDEELAARLKELEGKSYEVQRFKGLGEMNPEQLWE 584



 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 71/155 (45%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E  +         ++      V    +      F +      I    +      +  L 
Sbjct: 481 DEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYRLQ 540

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  +     L   +  +  K   +QR+KGLGEMN  QLWETT+NP+ R L +V++ 
Sbjct: 541 VGKKVEYLYSDEELAARLKELEGKSYEVQRFKGLGEMNPEQLWETTMNPEKRVLKKVELQ 600

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           DA +A +LF +LMG EV PRREFI+E++  + LDI
Sbjct: 601 DALEASELFEKLMGQEVAPRREFIEEHARYAELDI 635


>gi|327459890|gb|EGF06230.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK1057]
          Length = 649

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQAKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  GF+Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +       +        SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 634 RREFIEENAVYSTLDV 649


>gi|154503045|ref|ZP_02040105.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149]
 gi|153796286|gb|EDN78706.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149]
          Length = 645

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 299/585 (51%), Positives = 393/585 (67%), Gaps = 4/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I V
Sbjct: 9   DAEYGADQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGYCDTINV 67

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N D S TV DNGRGIP  L+ + GI A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 68  SINPDNSVTVVDNGRGIPVGLNHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 127

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ I  EG IY+  +  G     L V G    + TGT+VTFLP  +IF   
Sbjct: 128 VVNALSVWLEVEIYNEGKIYKQRYERGKTMYSLKVVGECDPDKTGTKVTFLPDGEIFEET 187

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F YD L+ RLRE++FL   ++I L D R  E RE T  Y+GGI+ FV+YL++ K PL  
Sbjct: 188 VFEYDVLKQRLREMAFLTKGLKIILQDLREEEIREHTFHYEGGIKEFVTYLNKSKTPLYD 247

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +D + +++AM+ ND Y +N   F NNI   +GGTH+ G R ALT+    Y  
Sbjct: 248 QIIYCEGEKDGVVVEMAMQHNDSYSDNTYGFVNNITTPEGGTHIEGFRKALTKTFNEYAR 307

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K ++ ++ GDD REG T+++S+K+ +P+F  QTK+KL +SE R  V++ V+  L 
Sbjct: 308 KNKLLKDNEPNLSGDDIREGLTAIVSVKIGEPQFEGQTKQKLGNSEARGAVDNIVSTQLE 367

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK  V+K L A   R+AAR+ARDLTRRK  L+  SLPGKLADCS+++P+  
Sbjct: 368 IFLEQNPSVAKQTVEKSLMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKNPENC 427

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+ ++ EI  +ITA GTGI
Sbjct: 428 EIYIVEGDSAGGSAKTARQRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 487

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + 
Sbjct: 488 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAQPPLYKLE 546

Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           + K + Y   +E L + L                 G +  + L  
Sbjct: 547 KNKKVWYAYSDEELNEILTEVGRDSNNKIQRYKGLGEMDADQLWE 591



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G   + DI   R  + +      ++G+ I +    +  R   + I E Y+      +  
Sbjct: 485 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAQPPLYK 544

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           L  N           L + +  +GR   + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 545 LEKNKKVWYAYSDEELNEILTEVGRDSNNKIQRYKGLGEMDADQLWETTMDPEHRVLLRV 604

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + D +  + D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 605 TMDDETSSELDLTFTTLMGDKVEPRREFIEENARFVKNLDI 645


>gi|325687830|gb|EGD29850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK72]
          Length = 649

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 280/627 (44%), Positives = 409/627 (65%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQSKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  GF+Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++      + ++  +  +L         SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYIQPGANQEEELQTAL--ARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 634 RREFIEENAVYSTLDV 649


>gi|62865972|gb|AAY17139.1| DNA gyrase B [Borrelia parkeri]
 gi|62865974|gb|AAY17140.1| DNA gyrase B [Borrelia parkeri]
 gi|62865976|gb|AAY17141.1| DNA gyrase B [Borrelia parkeri]
 gi|62865978|gb|AAY17142.1| DNA gyrase B [Borrelia parkeri]
 gi|62865980|gb|AAY17143.1| DNA gyrase B [Borrelia parkeri]
          Length = 634

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 275/584 (47%), Positives = 409/584 (70%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NSDNSVTVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+GN ++ ++  GI  + + + G +  + GT+VTFL  S+IF   +++
Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSGVEIVGVSS-NRGTKVTFLADSEIFETLEYD 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ DKR  + R +  +++GGI+AFV ++  + K +     
Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDKRLGKERFLEFYFEGGIKAFVDFITNNSKTIQSESY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G+ D++ + + ++W +GY +N+L F NNI  ++GGTH++G +S   + ++   + S 
Sbjct: 240 FIEGTCDDVIVSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKAMSEAFKDSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++  DD +EG T+V+SIK+P+P+F  QTK KL +S ++ +VE+ V++ L   +
Sbjct: 300 VSKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVHNELLKVI 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            ++ LE  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 GDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G++
Sbjct: 420 IVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKN 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI NG +YI  PPLY I    
Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPPLYKIKYEN 538

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
           S+ Y  D+   E +L +       +         G ++   L  
Sbjct: 539 SVHYFYDDSEKEIFLSSIETGKRDKISLQRYKGLGEMNPTQLWE 582



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRK-GISM 736
             F F    + I +  +    +  L  I   + +          +  +    G++  IS+
Sbjct: 508 LTFFFRYMRELIDNGHVY-IAMPPLYKIKYENSVHYFYDDSEKEIFLSSIETGKRDKISL 566

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT+NP TR +  ++I DA QA+++F  LMGD+VEPRREFI++N+
Sbjct: 567 QRYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAENIFVTLMGDDVEPRREFIEQNA 626

Query: 797 LP-SALDI 803
           L    LD+
Sbjct: 627 LDVVNLDV 634


>gi|325696789|gb|EGD38677.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK160]
          Length = 649

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 279/627 (44%), Positives = 405/627 (64%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  GF+Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +       +        SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  +  A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVNDAAEADKI 622



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVNDAAEADKIFDMLMGDRVEP 633

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 634 RREFIEENAVYSTLDV 649


>gi|322373420|ref|ZP_08047956.1| DNA gyrase, B subunit [Streptococcus sp. C150]
 gi|321278462|gb|EFX55531.1| DNA gyrase, B subunit [Streptococcus sp. C150]
          Length = 650

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 276/628 (43%), Positives = 399/628 (63%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D ++N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTDELKNFEEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP  + ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATHIQVFIEPDNSITVVDDGRGIPVGIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +++ + G+I+   +  G++ + L + G      GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVDDLAIIGDTE-KHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF     F++  L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI ++V 
Sbjct: 179 TPDPEIFQETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLEQEKHYHYEGGITSYVK 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y++ +K  +   PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH  G R+
Sbjct: 239 YINENKDVIFDEPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  ++   K    ++ GDD REG T+++S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYARQNKILKDKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++ LS +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  + + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPILEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++     +   +       + E      SK  + +      +DD 
Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGVNQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMDPVNRLMARVSVDDAAEADKI 623



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 58/74 (78%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           GR   ++QRYKGLGEM+  QLWETT++P  R + RV + DA++AD +F  LMGD+VEPRR
Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPVNRLMARVSVDDAAEADKIFDMLMGDKVEPRR 636

Query: 790 EFIQENSLPSALDI 803
           EFI+EN++ S LDI
Sbjct: 637 EFIEENAVYSTLDI 650


>gi|125717721|ref|YP_001034854.1| DNA gyrase subunit B [Streptococcus sanguinis SK36]
 gi|323351846|ref|ZP_08087497.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis VMC66]
 gi|125497638|gb|ABN44304.1| DNA gyrase, putative [Streptococcus sanguinis SK36]
 gi|322121903|gb|EFX93635.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis VMC66]
 gi|324990928|gb|EGC22863.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK353]
 gi|324993188|gb|EGC25108.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK405]
 gi|324995509|gb|EGC27421.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK678]
 gi|325689965|gb|EGD31969.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK115]
 gi|325694221|gb|EGD36137.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK150]
 gi|327461458|gb|EGF07789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK1]
 gi|327473763|gb|EGF19181.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK408]
 gi|332359588|gb|EGJ37406.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK49]
          Length = 649

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  GF+Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +       +        SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 634 RREFIEENAVYSTLDV 649


>gi|327469614|gb|EGF15083.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK330]
          Length = 649

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIVSYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  GF+Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +       +        SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSDVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 634 RREFIEENAVYSTLDV 649


>gi|213964047|ref|ZP_03392290.1| DNA gyrase, B subunit [Capnocytophaga sputigena Capno]
 gi|213953329|gb|EEB64668.1| DNA gyrase, B subunit [Capnocytophaga sputigena Capno]
          Length = 658

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 284/602 (47%), Positives = 391/602 (64%), Gaps = 17/602 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + +  + Y AD+IQ L+G++ V+ RPSMYIGD  G  GLHH++YEVLDN+IDE+L GY D
Sbjct: 8   EQLNPADYSADNIQSLEGMEHVRMRPSMYIGDV-GPRGLHHLVYEVLDNSIDEALAGYCD 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I+VT+N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHG
Sbjct: 67  TISVTINEDNSITVEDNGRGIPVDIHKKEGVSALQVVMTKIGAGGKFDKGSYKVSGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVS VNALS  LK  + R+G I+E  +  G+   P+   G   +  GT+VTF P   IF
Sbjct: 127 VGVSCVNALSDHLKATVYRDGKIWEQEYQRGVALYPVKQVGDT-DKRGTKVTFHPDELIF 185

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLD 237
                + YDTL  R+REL++LN  + I+L D R+ +          + + G++ FV +LD
Sbjct: 186 EQTTEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKGNFITEKFYSENGLKEFVKFLD 245

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            ++ P++   I ++G ++ I +++AM +ND Y+EN+  + NNI   +GGTHL G R  LT
Sbjct: 246 GNRMPIIGGVIAMEGEKNGIPVEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGFRMGLT 305

Query: 298 RQITSYVEKSFGSKKDKRSVI------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           R + +Y +KS   +K  +         GDD REG T+V+S+K+ +P+F  QTK KL + E
Sbjct: 306 RTLKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTKLGNRE 365

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V S V   V   L  +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+    LP
Sbjct: 366 VTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMSGGGLP 425

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCSE DP K ELFLVEGDSAGG+AKQGR+++NQAILPLRGKILNVE+A   K+  S
Sbjct: 426 GKLADCSEEDPTKCELFLVEGDSAGGTAKQGRNKDNQAILPLRGKILNVEKAMQHKVFDS 485

Query: 472 QEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            EI  + TALG  +G +        +KLRYHK+IIM DADVDG+HI TL+LTFFFR M  
Sbjct: 486 DEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFFRYMRE 545

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI NG +YI  PPLY +    S +        +   ++  +           G ++ + L
Sbjct: 546 LIENGHVYIATPPLYLVKSKSSKREEYAWNDKQRDALSAEMGNVTIQRYKGLGEMNDHQL 605

Query: 588 RN 589
            +
Sbjct: 606 WD 607



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 56/69 (81%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +++QRYKGLGEMN  QLW+TT+NP  R+L +V I +A++AD +FS LMGDEV PRREFI+
Sbjct: 589 VTIQRYKGLGEMNDHQLWDTTMNPQHRTLRQVTIDNATEADRVFSMLMGDEVPPRREFIE 648

Query: 794 ENSLPSALD 802
           +N+  + +D
Sbjct: 649 KNAKYAKID 657


>gi|164686442|ref|ZP_02210470.1| hypothetical protein CLOBAR_00007 [Clostridium bartlettii DSM
           16795]
 gi|164604453|gb|EDQ97918.1| hypothetical protein CLOBAR_00007 [Clostridium bartlettii DSM
           16795]
          Length = 633

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 297/583 (50%), Positives = 399/583 (68%), Gaps = 3/583 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A+ IQ+L+GL+AV+ RP MYIG T G  GLHH++YE++DN+IDE+L+GY D I V
Sbjct: 2   KQEYGANQIQVLEGLEAVRLRPGMYIGST-GPRGLHHLVYEIVDNSIDEALQGYCDRIYV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS T  D+GRGIP + H + G S  E ++T LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  CINEDGSVTTKDDGRGIPVETHPKTGKSTLETVLTILHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVN LS WL   + R G IY  S+  GI D+ L + G + + TGT + F+P + IF    
Sbjct: 121 VVNGLSEWLVAEVYRNGKIYRQSYKKGITDSELEIVGESDH-TGTIIQFMPDATIFDDIV 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y TL+ RLREL+FLN  V+I   DKR  + ++    Y GGI  FV YL+  K P+ ++
Sbjct: 180 FDYKTLETRLRELAFLNKGVRIVFEDKRPGQEQKKEFLYDGGIREFVEYLNSTKTPIHEN 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            + I     +  +++A+++ DGY EN+L F NNI   +GG HL+G ++ALT+ +  Y ++
Sbjct: 240 VVYIDKKIQDCMVEIAIQYTDGYSENILSFANNIDTHEGGAHLAGFKAALTKTVNEYAKR 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K++  ++ G+D REG T+V+S+K+PDP+F  QTK KL ++ +R +V++   + L A
Sbjct: 300 NKLLKENDANLSGEDIREGLTAVVSVKLPDPQFEGQTKTKLGNTRMRGIVDAVTVEELGA 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P  ++IIV K L A   R+AA+RAR+LTRRK VL+  SLPGKLADC+E+DP KSE
Sbjct: 360 FLEENPQTSRIIVDKALRAQRAREAAKRARELTRRKTVLESTSLPGKLADCAEKDPAKSE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R D++LSS EI  +ITA G G+G
Sbjct: 420 IFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGVG 479

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFFFR M  LI NG++YI +PPLY + +
Sbjct: 480 ND-FDLEKARYHKIVIMTDADVDGAHIRTLLLTFFFRYMRPLIDNGYVYIAQPPLYKVKK 538

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            K   YV  ++ LE  L     S          G ++   L  
Sbjct: 539 QKKEYYVYSDKQLEALLEEIGKSGIELQRYKGLGEMNPEQLWE 581



 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 3/198 (1%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            + +  +   +   + N E  +   +  + ++ N +          +         +V  
Sbjct: 438 RYTQAIL--PLRGKILNVEKSRLDRILSSDEIKNMITAYGCGVGNDFDLEKARYHKIVIM 495

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F F      I +  +      +  +     +  +     L   +
Sbjct: 496 TDADVDGAHIRTLLLTFFFRYMRPLIDNGYVYIAQPPLYKVKKQKKEYYVYSDKQLEALL 555

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG+ GI +QRYKGLGEMN  QLWETT+NP+TR+LL+V I DA++AD +FS LMGD+V 
Sbjct: 556 EEIGKSGIELQRYKGLGEMNPEQLWETTMNPETRTLLQVTIDDATEADRIFSMLMGDKVG 615

Query: 787 PRREFIQENSLPS-ALDI 803
           PR+EFI+EN+     LDI
Sbjct: 616 PRKEFIEENAEFVKNLDI 633


>gi|7437446|pir||S70991 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B -
           Mycobacterium smegmatis
 gi|1321898|emb|CAA63253.1| gyrB [Mycobacterium smegmatis]
          Length = 706

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 273/674 (40%), Positives = 384/674 (56%), Gaps = 36/674 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N     Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ G+A 
Sbjct: 36  KNNAPKEYGADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGFAT 94

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V ++ DGS  V D+GRGIP ++H   G+   +V+MT+LHAGGKF+ ++Y VSGGLHG
Sbjct: 95  RVDVKIHADGSVEVRDDGRGIPVEMHA-TGMPTIDVVMTQLHAGGKFDGETYAVSGGLHG 153

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L+  + R+G  +   +   +    L   G    +TGT + F    +IF
Sbjct: 154 VGVSVVNALSTRLEATVLRDGYEWFQYYDRSVP-GKLKQGGETK-ETGTTIRFWADPEIF 211

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              D+N++T+  RL+E++FLN  + I L D+R                            
Sbjct: 212 ETTDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEKAAEA 271

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +     Y GG+  +V +++R K P+ QS I   G      +++AM+WN GY E+
Sbjct: 272 TGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVEIAMQWNAGYSES 331

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 332 VHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREGLAAVISV 391

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P EAK +V K + ++  R AA
Sbjct: 392 KVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSSAQARIAA 451

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 452 RKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILP 511

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKI+NVE+AR D++L + E+ ++ITALGTGI  D FDI+KLRYHKI++M DADVDG H
Sbjct: 512 LRGKIINVEKARIDRVLKNTEVQSIITALGTGI-HDEFDISKLRYHKIVLMADADVDGQH 570

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEE 571
           I TLLLT  FR M  L+ NG +++ +PPLY +   +S  ++   +   +  L     + +
Sbjct: 571 ISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEAGRAAGK 630

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                D           +  +                       A          D E  
Sbjct: 631 KINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVEAR 690

Query: 632 VSLASKLANRLNFI 645
            S  ++ A  + F+
Sbjct: 691 RSFITRNAKDVRFL 704



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 621 LLEAGRAAGKK-INVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 679

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 680 SILMGEDVEARRSFITRNAKDVRFLDV 706


>gi|331086961|ref|ZP_08336037.1| DNA gyrase subunit B [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409622|gb|EGG89061.1| DNA gyrase subunit B [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 638

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 294/585 (50%), Positives = 396/585 (67%), Gaps = 4/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I V
Sbjct: 2   STEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALGGYCDTIFV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N D S TV DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  SINKDNSITVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ I  EG IY+  +  G     L V G    + TGT+VTFLP ++IF   
Sbjct: 121 VVNALSVWLEVEIYNEGKIYKQRYERGKSAYQLKVVGECEADKTGTKVTFLPDAEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y+ L+ R RE++FL  +++I L D+R  E  E T  Y+GGI+ FV YL++ K PL +
Sbjct: 181 EFDYNILKQRFREMAFLTKNLKIVLADERPEERIEKTFHYEGGIKEFVQYLNKSKTPLYE 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +D +++++AM+ ND Y +N   F NNI   +GGTH+ G R+ALT+    Y  
Sbjct: 241 QIIYCEGQKDGVAVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRNALTKTFNEYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K  + ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V+S ++  L 
Sbjct: 301 KNKLLKDSEPNLSGEDIREGLTAIISVKIQDPQFEGQTKQKLGNSEARGAVDSVLSTQLE 360

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK++++K + A   R+AAR+ARDLTRRK  L+  SLPGKLADCSE+D  K 
Sbjct: 361 IFLEQNPQVAKVVIEKSVLAQRAREAARKARDLTRRKSALEGMSLPGKLADCSEKDASKC 420

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+ ++ EI  +ITA GTGI
Sbjct: 421 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 480

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + 
Sbjct: 481 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKLE 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           + K + Y   +E L   L                 G +    L  
Sbjct: 540 KNKKVWYAYSDEELNKILQEVGRDGNNKIQRYKGLGEMDAEQLWE 584



 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y       L  
Sbjct: 478 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYK 537

Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        L+ I    GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 538 LEKNKKVWYAYSDEELNKILQEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRVLLRV 597

Query: 766 KITDA--SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + +   S+ D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 598 TMDEESSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLDI 638


>gi|190710555|gb|ACE95108.1| gyrase subunit B [Bacillus thuringiensis serovar monterrey]
          Length = 627

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYD   IQ+L+GL+AV+KRP MYI  T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIASTS-GKGLHHLVWEIVDNSIDEALAGYCDQINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++    S  V+DNGRGIP  + ++ G  A +VIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEYNSIRVTDNGRGIPVGIQEKMGRPAVKVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF    
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I +G++YI +PPL+ + 
Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQ 536

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  +E+ LE  L       +         G ++   L  
Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581



 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 156/461 (33%), Gaps = 46/461 (9%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG   G   +              G   N+         ++            G    
Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   ++         +  +++       K  +  + L   + 
Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 526

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 527 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627


>gi|307069626|ref|YP_003878103.1| putative DNA gyrase subunit B [Candidatus Zinderia insecticola
           CARI]
 gi|306482886|gb|ADM89757.1| putative DNA gyrase, B subunit [Candidatus Zinderia insecticola
           CARI]
          Length = 817

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 301/826 (36%), Positives = 480/826 (58%), Gaps = 50/826 (6%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y+ +SI++L  L+A+KKRP MYIG T+  SGLHH+I+EV+DN+IDE L G+ ++I + 
Sbjct: 5   NKYNENSIKVLNSLEAIKKRPDMYIGSTNDGSGLHHLIFEVIDNSIDEFLSGFCNLINIK 64

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEG----ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           +  +   ++ DNGRGIP ++ +++      SAAE++MT LH+G KFN KSYK+S GLHGV
Sbjct: 65  IYKNNYISIYDNGRGIPINIKEDDNNIPLRSAAEIVMTELHSGSKFNNKSYKISSGLHGV 124

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGSAGNDTGT 171
           G+S +NALS  +KL I +    Y + F  GIL             + + + G      GT
Sbjct: 125 GLSCLNALSKRVKLIIYKNKKKYFLEFKFGILQNRKIYIKNNIKYSKVKIIGKTK-KRGT 183

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           ++ FL +  IF     +YD +  +L+ LSFLN  ++I++ID R  + ++I      GI  
Sbjct: 184 KIKFLLNKKIFKNIYPSYDIIYEKLKTLSFLNKKLKINIIDFRIKKKKKIKF--NNGIIN 241

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           ++  ++ +KK + +  I+++   ++I I + + WN      +LC+TNNI QK+GG HL  
Sbjct: 242 YLKNININKKIIGEKIIKMKKLINSIEISIFILWNFSIKSKILCYTNNIIQKNGGIHLIT 301

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           L++++TR I  Y  K    KK+   + GDD REG   +LS+KM +P+F+SQ K+KL+S E
Sbjct: 302 LKTSITRIINKY-IKKNKFKKNNIEISGDDIREGMNCILSLKMSNPKFNSQIKDKLISEE 360

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR  +E  + + L+ +L+++ L +K I KK++++++ R   +  + +  +    +   L 
Sbjct: 361 VRLPIEELIFNKLNIFLKKNILFSKNICKKIINSAISRIKIKNNKMIISKLFSKNNIYLS 420

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
            KL++C E++PK SEL++VEGDSAGGSAKQ R+R+ QAILPLRGK+LNVE++ F+K++ S
Sbjct: 421 SKLSECQEKNPKISELYIVEGDSAGGSAKQARNRKFQAILPLRGKVLNVEKSNFEKIIKS 480

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+T LG  I ++ F I KL+Y+ IIIMTDAD+DGAHIRTLLLT F+R +P LI+ 
Sbjct: 481 KQITTLLTILGLKIEKNKFYIKKLKYNNIIIMTDADIDGAHIRTLLLTLFYRYIPELINK 540

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
            ++YI +PPLY I + K   Y K++     Y++N    +   +   +  +  K +     
Sbjct: 541 QYVYIAQPPLYKIKKKKESIYFKNDIEFNKYILNFFSKKINFISKKNIKINKKINFLYLF 600

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
           +   KI K+I   +    K  I   ++ G+    S+ +        L   +N      + 
Sbjct: 601 NKYNKIQKIISKTFNKI-KNIIFYCLLKGIKINISNYKSCKKTIKNLNKTINNKNINIKY 659

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
               +     I  K+         +L+ +S+F    KY  I++       ++ + L    
Sbjct: 660 KIKNNKYTIYIKYKKNINN-----LLKINSLFLKNKKYNEIYN-------ISKIFLYLKN 707

Query: 712 DKIKITGP-----------------CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETT 754
            KI +                      +L+      +K I++QRYKGLGEMN++QLW+TT
Sbjct: 708 KKIYVYDLDKKKKKIFYKKINIKNFKKILNYFLIKFKKNINLQRYKGLGEMNSNQLWKTT 767

Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800
           +NP TRSLL+VKI +    + LF+ LMG+ ++ R+ FI+ N L   
Sbjct: 768 MNPKTRSLLKVKIKNIKYTNKLFNDLMGNNIKARKIFIEFNYLYLN 813


>gi|293556775|ref|ZP_06675338.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1039]
 gi|291601107|gb|EFF31396.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1039]
          Length = 692

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 271/662 (40%), Positives = 385/662 (58%), Gaps = 17/662 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   
Sbjct: 14  KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGV
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F N G  D  L   G      GT V FLP   IF
Sbjct: 132 GASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F+Y+ L  RLRE +FL   V+ISL D R  EP +    Y+ GI+ FV YL+  K  
Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEEKDT 251

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+    
Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV++ +
Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL    
Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549

Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PPLY +++G+  + V +    +D    +I +     +       G ++   L        
Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            +D   +           +          +  +     + + +   L       +K    
Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDT 664

Query: 656 SI 657
            I
Sbjct: 665 EI 666



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 628 VTTLMGDKVEPRRKWIENH 646


>gi|293568154|ref|ZP_06679490.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1071]
 gi|291589144|gb|EFF20956.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1071]
          Length = 692

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 271/662 (40%), Positives = 385/662 (58%), Gaps = 17/662 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   
Sbjct: 14  KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGV
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F N G  D  L   G      GT V FLP   IF
Sbjct: 132 GASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F+Y+ L  RLRE +FL   V+ISL D R  EP +    Y+ GI+ FV YL+  K  
Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEEKDT 251

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+    
Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV++ +
Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL    
Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549

Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PPLY +++G+  + V +    +D    +I +     +       G ++   L        
Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            +D   +           +          +  +     + + +   L       +K    
Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDT 664

Query: 656 SI 657
            I
Sbjct: 665 EI 666



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 628 VTTLMGDKVEPRRKWIENH 646


>gi|283797181|ref|ZP_06346334.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
 gi|291075139|gb|EFE12503.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
          Length = 636

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 297/584 (50%), Positives = 401/584 (68%), Gaps = 5/584 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L G+   I V 
Sbjct: 3   SEYSADQIQILEGLEAVRKRPGMYIGSTS-IRGLHHLVYEIVDNSVDEALAGFCSEIDVQ 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N D S TV+DNGRGIP D+ K+ GI A EV+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 62  INADNSITVTDNGRGIPVDIQKKAGIPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186
           VNALS WL++ I ++G+IY   +  G +  PL + G    +  GT VTFLP  +IF    
Sbjct: 122 VNALSEWLEVDIYKDGHIYNQRYEKGKVMYPLTIKGDCPADKHGTRVTFLPDKEIFEETV 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YDTL+ RLRE +FL  +++I L D R  + +E T  Y+GGI+ FV+YL+R  + L   
Sbjct: 182 YDYDTLKVRLRETAFLTKNLKIILRDDREEK-QEKTFHYEGGIKEFVTYLNRGGESLYAP 240

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G RDN+ +++AM+ ND Y EN+  F NNI   +GGTHLSG ++ALT     Y  K
Sbjct: 241 VIYCEGVRDNVYVEVAMQHNDSYTENIYTFVNNINTPEGGTHLSGFKTALTNTFNDYARK 300

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K+++ S+ G+D REG T+++S+K+ +P+F  QTK+KL ++E R+ V   V++ L+ 
Sbjct: 301 NKLLKENEPSLSGEDIREGLTAIISVKLEEPQFEGQTKQKLGNTEARAAVAGIVSEQLTY 360

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LE++P  AKII +K + A   R AARRAR++TRRK  LD  +LPGKLADCS+++P+  E
Sbjct: 361 FLEQNPGVAKIISEKSILAQRARAAARRAREMTRRKSALDGLALPGKLADCSDKNPENCE 420

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAK+ RS+ NQAILPLRGKILNVE+AR DK+ ++ EI ++ITA GTGI 
Sbjct: 421 IYLVEGDSAGGSAKEARSKANQAILPLRGKILNVEKARLDKIYANAEIRSMITAFGTGIH 480

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY I +
Sbjct: 481 ED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKIEK 539

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            K + Y   +  L   L      +          G +    L  
Sbjct: 540 NKRIWYAYSDAELNSILSEIGRDQNNKIQRYKGLGEMDAEQLWE 583



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 16/181 (8%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK- 690
             RL+ I   +E          G   + DI   R  + +      ++G+ I +    +  
Sbjct: 456 KARLDKIYANAEIRSMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIY 515

Query: 691 RIFSNRIEENY----LTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGE 744
           R     I++ Y       L  I    +I      + L++I S   +  +  +QRYKGLGE
Sbjct: 516 RFMPELIKQGYVYLAQPPLYKIEKNKRIWYAYSDAELNSILSEIGRDQNNKIQRYKGLGE 575

Query: 745 MNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           M+A QLWETT++P+ R LLRV + + +  + D  F+ LMGD+VEPRREFI+ N+    LD
Sbjct: 576 MDAEQLWETTMDPERRILLRVTMDEETTSEVDLTFTTLMGDQVEPRREFIEANAKYGTLD 635

Query: 803 I 803
           I
Sbjct: 636 I 636


>gi|332366316|gb|EGJ44068.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK1059]
          Length = 649

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 278/627 (44%), Positives = 405/627 (64%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G +Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGLVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +       +        SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 634 RREFIEENAVYSTLDV 649


>gi|332361540|gb|EGJ39344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK1056]
          Length = 649

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQKDIQAQKYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  GF+Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +       +        SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 634 RREFIEENAVYSTLDV 649


>gi|55821497|ref|YP_139939.1| DNA gyrase subunit B [Streptococcus thermophilus LMG 18311]
 gi|55823426|ref|YP_141867.1| DNA gyrase subunit B [Streptococcus thermophilus CNRZ1066]
 gi|116628216|ref|YP_820835.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9]
 gi|55737482|gb|AAV61124.1| DNA gyrase B subunit [Streptococcus thermophilus LMG 18311]
 gi|55739411|gb|AAV63052.1| DNA gyrase B subunit [Streptococcus thermophilus CNRZ1066]
 gi|116101493|gb|ABJ66639.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9]
 gi|312278836|gb|ADQ63493.1| DNA gyrase subunit B [Streptococcus thermophilus ND03]
          Length = 650

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 280/628 (44%), Positives = 404/628 (64%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D ++N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTDELKNLEEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASHIKVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +++ + G+I+   +  G++ + L + G    + GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVDDLRIIGETE-EHGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF     F++  L  R +EL+FLN  ++IS+IDKR    +E    Y+GGI ++V 
Sbjct: 179 IPDPEIFQETTEFDFGKLAKRFQELAFLNKGLRISIIDKREGLEQEKHYHYEGGITSYVK 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           Y++ +K  +   PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH  G R+
Sbjct: 239 YINENKDVIFDEPIYTYGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y  ++   K+   ++ GDD REG T+++S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++ LS +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  +P+ +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNNPEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGSE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMHPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++     +   D       + E      SK  + +      +DD 
Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGADQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMDPENRLLARVSVDDAAEADKI 623



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 59/74 (79%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           GR   ++QRYKGLGEM+  QLWETT++P+ R L RV + DA++AD +F  LMGD+VEPRR
Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLLARVSVDDAAEADKIFDMLMGDKVEPRR 636

Query: 790 EFIQENSLPSALDI 803
           EFI+EN++ S LDI
Sbjct: 637 EFIEENAVYSTLDI 650


>gi|332668538|ref|YP_004451545.1| DNA gyrase subunit B [Cellulomonas fimi ATCC 484]
 gi|332337575|gb|AEE44158.1| DNA gyrase, B subunit [Cellulomonas fimi ATCC 484]
          Length = 682

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 273/613 (44%), Positives = 380/613 (61%), Gaps = 33/613 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S       YDA +I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GY 
Sbjct: 10  STPNGAGGYDASAITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYC 68

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VTL  DG   V+DNGRGIP ++H  EG    EV+MT LHAGGKF    Y VSGGLH
Sbjct: 69  DTIEVTLLADGGVRVADNGRGIPVEMHPTEGKPTLEVVMTILHAGGKFGGAGYAVSGGLH 128

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           GVG+SVVNALSS ++  +KR+G  ++M F + G     +   G A  +TGT  TF   S 
Sbjct: 129 GVGISVVNALSSRVESVVKRDGYTWQMDFEDGGKPVGSIRQ-GEATQETGTSQTFWADST 187

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------SP 216
           IF   D++++TL+ R ++ +FLN  ++I+L D+R                        +P
Sbjct: 188 IFETIDYDFETLRSRFQQTAFLNKGLRITLTDERPQHTGTEDEVTDADRTVDGDEPVDTP 247

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHEN 272
           + R ++  Y GG+  +V++L+  KK        I I        IS+D+A++W   Y E+
Sbjct: 248 QHRTVSYKYDGGLVDYVTHLNAAKKVELVHPEVIEITAEDTDRRISVDIALQWTSAYSES 307

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+A+T  I  Y +     K+   ++ GDD REG T+V+S+
Sbjct: 308 VHTFANTISTTEGGTHEEGFRAAMTSLINRYAKDKNLLKEKDDNLTGDDIREGLTAVISV 367

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++E ++ V+  VN+ L+ WL+ HP EA+ +++K + A+  R AA
Sbjct: 368 KLGEPQFEGQTKTKLGNTEAKTFVQKVVNERLADWLDSHPNEARDVIRKSIQAAAARMAA 427

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+ TRRKG+L+   +PGKL DC   +P + E+F+VEGDSAGGSA +GR+   QAILP
Sbjct: 428 RKAREATRRKGLLESGGMPGKLKDCQSNNPAECEVFIVEGDSAGGSAVRGRNPRTQAILP 487

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVERAR D+ L +QE+  LITA GTGIG+D FD+ KLRYHKI++M DADVDG H
Sbjct: 488 IRGKILNVERARLDRALGNQEVQALITAFGTGIGED-FDLAKLRYHKIVLMADADVDGKH 546

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEE 571
           I TLLLT  FR MP LI  G +Y+ +PPLY I        YV  +   + Y+     + +
Sbjct: 547 ICTLLLTLLFRYMPELITQGHVYLAQPPLYRIKWSNADHDYVYSDRERDAYIKEGQANGK 606

Query: 572 IELFCDSKGVISK 584
                ++      
Sbjct: 607 RLPKDNAIQRYKG 619



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ S+LWETT++P+ R+LL+V + +A+ AD++FS LMG++VE RR FIQ N
Sbjct: 614 IQRYKGLGEMDYSELWETTMSPEHRTLLQVSLDEAAAADEIFSVLMGEDVESRRSFIQRN 673

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 674 AKDVRFLDI 682


>gi|150387859|ref|YP_001317908.1| DNA gyrase, B subunit [Alkaliphilus metalliredigens QYMF]
 gi|149947721|gb|ABR46249.1| DNA gyrase, B subunit [Alkaliphilus metalliredigens QYMF]
          Length = 635

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 287/592 (48%), Positives = 406/592 (68%), Gaps = 5/592 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + IQ   Y A+ IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY
Sbjct: 1   MENKIQ--EYGAEQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D+I VT+  D S  V DNGRGIP + H + G S  E +MT LHAGGKF    YKVSGGL
Sbjct: 58  CDVIDVTIYQDNSIKVVDNGRGIPIETHPQTGKSTLETVMTVLHAGGKFGGGGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS ++++ ++++G +Y+  +  GI    +   G       T +TF   S+
Sbjct: 118 HGVGISVVNALSEYVEVEVRKDGKLYKQRYERGIPITDVQEVGETTETG-TTITFKADSE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    + Y TL++RLRE++FLN  ++I+L D R  E  E +  Y GGI+ FV +L+R++
Sbjct: 177 IFEEILYVYTTLENRLREMAFLNKGIKITLRDLREEEVMESSFRYDGGIQEFVMHLNRNR 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L+   I  +  ++   +++A+++   Y EN+  + N I   +GGTHLSG ++ LTR I
Sbjct: 237 EALIDKVIYFEKQKEGSVVEVALQYTGAYTENIFSYANTINTHEGGTHLSGFKAGLTRVI 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K+   K+ + +++G+D REG T+++S+KM DP+F  QTK KL +SE++ +VES  
Sbjct: 297 NEYARKNGILKEKEINLLGEDIREGLTAIISVKMADPQFEGQTKTKLGNSEMKGIVESST 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  L A+LEE+P EAKII++K L A   R+AA++AR+LTRRKG L+  +LPGKLADC+E+
Sbjct: 357 SQYLEAFLEENPHEAKIIIEKSLRAQRAREAAKKARELTRRKGALENTALPGKLADCAEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+++VEG+SAGGSAKQGR R  QAILPLRGKILNVE++R D++L S EI  +ITA
Sbjct: 417 DPALSEIYIVEGNSAGGSAKQGRDRATQAILPLRGKILNVEKSRLDRILGSAEIRNMITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGIG   FDI K+RYHKI+IMTDADVDGAHIRTLLLTFFFR M  LI  G++YI +PP
Sbjct: 477 FGTGIG-IEFDIEKVRYHKIVIMTDADVDGAHIRTLLLTFFFRYMKPLIELGYVYIAQPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           LY + +GK   Y   +E ++  ++    S +I+ +     +  +      ++
Sbjct: 536 LYKLKKGKVENYAYSDEEMQKIIVQMGGSADIQRYKGLGEMNPEQLWDTTMN 587



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 2/184 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  ++++ N +          +         +V      V    +    
Sbjct: 453 ILNVEKSRLDRILGSAEIRNMITAFGTGIGIEFDIEKVRYHKIVIMTDADVDGAHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I    +      +  L     +        +   I  +G     +QRYK
Sbjct: 513 LTFFFRYMKPLIELGYVYIAQPPLYKLKKGKVENYAYSDEEMQKIIVQMGG-SADIQRYK 571

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLW+TT+NP+TR+ L+V I DA+ ADD+F+ LMGD+VEPRR+FI++NS    
Sbjct: 572 GLGEMNPEQLWDTTMNPETRTFLQVSIEDAAGADDIFNTLMGDKVEPRRQFIEQNSKYVT 631

Query: 800 ALDI 803
            LDI
Sbjct: 632 NLDI 635


>gi|126179353|ref|YP_001047318.1| DNA gyrase, B subunit [Methanoculleus marisnigri JR1]
 gi|125862147|gb|ABN57336.1| DNA gyrase subunit B [Methanoculleus marisnigri JR1]
          Length = 656

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 292/642 (45%), Positives = 404/642 (62%), Gaps = 34/642 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D     +YDA  I +L+GL  V++RP+MYIG T+   GLHH++YEV+DNA+DE+L G+
Sbjct: 1   MTD-----TYDASHITVLEGLRPVRERPAMYIGSTES-RGLHHLVYEVVDNAVDEALAGF 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D+I VT+N DGS +V DNGRGIP DL  + G SA E+++T LHAGGKF++ +Y+VSGGL
Sbjct: 55  CDLIQVTVNRDGSVSVDDNGRGIPVDLMPQYGKSALEIVLTVLHAGGKFDKNTYQVSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND------------ 168
           HGVGVSVVNALSSWL   + ++GN+Y M F  G++  PL       ++            
Sbjct: 115 HGVGVSVVNALSSWLDATVFKDGNVYAMQFRQGLVAKPLASRPETEHEMEARYEERYGAR 174

Query: 169 ----------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
                      GT +TF P   IF   +F+YD L HRLREL++LNS + I L D+R+ + 
Sbjct: 175 DGQPLDYERLRGTRITFQPDRSIFETVEFDYDVLDHRLRELAYLNSGLTIVLRDERTGDV 234

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ--GSRDNISIDLAMRWNDGYHENVLCF 276
                  + GI  FV++L   K+ L    I  Q   S   + +++A+++N+ Y E +  +
Sbjct: 235 VTYCF--EDGIRQFVAHLGEGKESLHDDIIYFQKRDSESKVEVEVALQYNNSYSETIYTY 292

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N++  ++GGTHL G RSALTR I S   ++   K +   V G+D REG   V+S ++ +
Sbjct: 293 VNSVNTREGGTHLEGFRSALTRAINSAAHRNNLLKNNDAQVKGEDVREGLACVISTRVAN 352

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK +L +S VR +V+S V   L+ + EEHP   + +V K + A+  R+AAR AR
Sbjct: 353 PQFEGQTKMRLGNSNVRGIVDSLVYSSLTEYFEEHPKTLQTVVDKAMAAARAREAARTAR 412

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +L RRK  L+   LPGKLADC ERDP KSEL++VEGDSAGGSAKQGR R+ QAILPLRGK
Sbjct: 413 ELARRKSTLESTGLPGKLADCQERDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 472

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+A   K+L + EI  LI+A+GTG+G DSFD  + RYH+II+MTDADVDGAHIRTL
Sbjct: 473 ILNVEKASEHKILKNAEIQALISAIGTGVG-DSFDAERARYHRIILMTDADVDGAHIRTL 531

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LLTFF+R M  L+ NG++YI +PPLY + +G+  QYV  EE + + L             
Sbjct: 532 LLTFFYRYMVGLVENGYIYIAQPPLYRVAKGRQEQYVYREEEMREILAEWGEKGVSIQRY 591

Query: 577 DS-KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
                + +       +D A +I K +K     +     E+ +
Sbjct: 592 KGLGEMNAGQLWSTTMDPANRILKQVKIEDAAYANEIFEKLM 633



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   E  +   +++   ++ I      S+         ++      V    +    
Sbjct: 473 ILNVEKASEHKILKNAEIQALISAIGTGVGDSFDAERARYHRIILMTDADVDGAHIRTLL 532

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      + +  I      +  +     +  +     + + +   G KG+S+QRYK
Sbjct: 533 LTFFYRYMVGLVENGYIYIAQPPLYRVAKGRQEQYVYREEEMREILAEWGEKGVSIQRYK 592

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLW TT++P  R L +VKI DA+ A+++F +LMG+ V+ RR+FI+ ++    
Sbjct: 593 GLGEMNAGQLWSTTMDPANRILKQVKIEDAAYANEIFEKLMGENVDARRDFIRRHAKEVS 652

Query: 800 ALDI 803
            LD+
Sbjct: 653 NLDV 656


>gi|62865970|gb|AAY17138.1| DNA gyrase B [Borrelia parkeri]
          Length = 634

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 275/584 (47%), Positives = 409/584 (70%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NSDNSVTVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L++ + R+GN ++ ++  GI  + + + G +  + GT+VTFL  S+IF   +++
Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSGVEIVGVSS-NRGTKVTFLADSEIFETLEYD 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ DKR  + R +  +++GGI+AFV ++  + K +     
Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDKRLGKERFLEFYFEGGIKAFVDFITNNSKTIQSESY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G+ D++ + + ++W +GY +N+L F NNI  ++GGTH++G +S   + ++   + S 
Sbjct: 240 FIEGTYDDVIVSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKAMSEAFKDSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  ++  DD +EG T+V+SIK+P+P+F  QTK KL +S ++ +VE+ V++ L   +
Sbjct: 300 VSKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVHNELLKVI 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            ++ LE  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 GDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G++
Sbjct: 420 IVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKN 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI NG +YI  PPLY I    
Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPPLYKIKYEN 538

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
           S+ Y  D+   E +L +       +         G ++   L  
Sbjct: 539 SVHYFYDDSEKEIFLSSIETGKRDKISLQRYKGLGEMNPTQLWE 582



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRK-GISM 736
             F F    + I +  +    +  L  I   + +          +  +    G++  IS+
Sbjct: 508 LTFFFRYMRELIDNGHVY-IAMPPLYKIKYENSVHYFYDDSEKEIFLSSIETGKRDKISL 566

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN +QLWETT+NP TR +  ++I DA QA+++F  LMGD+VEPRREFI++N+
Sbjct: 567 QRYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAENIFVTLMGDDVEPRREFIEQNA 626

Query: 797 LP-SALDI 803
           L    LD+
Sbjct: 627 LDVVNLDV 634


>gi|293570285|ref|ZP_06681354.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E980]
 gi|291609692|gb|EFF38953.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E980]
          Length = 692

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 271/662 (40%), Positives = 385/662 (58%), Gaps = 17/662 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   
Sbjct: 14  KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGV
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F N G  D  L   G      GT V FLP   IF
Sbjct: 132 GASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTIF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F+Y+ L  RLRE +FL   V+ISL D R  EP +    Y+ GI+ FV YL+  K  
Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEVFHYEEGIKEFVDYLNEEKDT 251

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+    
Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV++ +
Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL    
Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549

Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PPLY +++G+  + V +    +D    +I +     +       G ++   L        
Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            +D   +           +          +  +     + + +   L       +K    
Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDA 664

Query: 656 SI 657
            I
Sbjct: 665 EI 666



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 628 VTTLMGDKVEPRRKWIENH 646


>gi|325570905|ref|ZP_08146554.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156309|gb|EGC68492.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus
           casseliflavus ATCC 12755]
          Length = 677

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 271/663 (40%), Positives = 383/663 (57%), Gaps = 19/663 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M    + + Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MGLAKKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +V DNGRG+P   H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 60  GNEIDVTIHKDNSISVRDNGRGMPVGTHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSSWL++ I R+G  Y+ SF + G     L   G     TGT VTF P  
Sbjct: 119 HGVGASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDD 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRE +FL   V+ISL D+R  EP      Y+ GI+ FV YL+  
Sbjct: 179 TIFSTTKFSYEILAERLRESAFLLKGVKISLTDERGEEPIHEVFLYEEGIKEFVDYLNEE 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L Q  +   G+++ I ++LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+ 
Sbjct: 239 KDTLTQ-VVYFSGTKEAIEVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTK KL +   R+ V+
Sbjct: 298 FNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARNAVD 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + + + L  +L+E+   ++++V+K + A   R+AAR+AR+   T +K     + L GKL 
Sbjct: 358 NVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLLSGKLT 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 418 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 477

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 478 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 536

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    +   ++Y   ++ L            +       G ++ + L    
Sbjct: 537 IALPPLYKVSKGLGKKAVVEYAWTDDELSKLTQKIGKGY-MLQRYKGLGEMNADQLWET- 594

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                +D   +           +          +  +     + S +   L       +K
Sbjct: 595 ----TMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIESHVQFSLEEDGSILDK 650

Query: 652 SWH 654
              
Sbjct: 651 KED 653



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/64 (62%), Positives = 55/64 (85%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   + LMGD+VEPRR++
Sbjct: 573 KGYMLQRYKGLGEMNADQLWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKW 632

Query: 792 IQEN 795
           I+ +
Sbjct: 633 IESH 636


>gi|293563433|ref|ZP_06677882.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1162]
 gi|314938043|ref|ZP_07845353.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a04]
 gi|314941971|ref|ZP_07848832.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133C]
 gi|314948776|ref|ZP_07852148.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0082]
 gi|314951794|ref|ZP_07854833.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133A]
 gi|314991799|ref|ZP_07857257.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133B]
 gi|314995840|ref|ZP_07860927.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a01]
 gi|291604694|gb|EFF34179.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1162]
 gi|313589944|gb|EFR68789.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a01]
 gi|313593610|gb|EFR72455.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133B]
 gi|313596073|gb|EFR74918.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133A]
 gi|313599223|gb|EFR78068.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133C]
 gi|313642618|gb|EFS07198.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a04]
 gi|313644842|gb|EFS09422.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0082]
          Length = 692

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 271/662 (40%), Positives = 385/662 (58%), Gaps = 17/662 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   
Sbjct: 14  KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGV
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F N G  D  L   G      GT V FLP   IF
Sbjct: 132 GASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F+Y+ L  RLRE +FL   V+ISL D R  EP +    Y+ GI+ FV YL+  K  
Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEEKDT 251

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+    
Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV++ +
Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL    
Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549

Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PPLY +++G+  + V +    +D    +I +     +       G ++   L        
Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            +D   +           +          +  +     + + +   L       +K    
Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDT 664

Query: 656 SI 657
            I
Sbjct: 665 EI 666



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 628 VTTLMGDKVEPRRKWIENH 646


>gi|261207615|ref|ZP_05922300.1| gram positive topoisomerase IV [Enterococcus faecium TC 6]
 gi|260077998|gb|EEW65704.1| gram positive topoisomerase IV [Enterococcus faecium TC 6]
          Length = 681

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 271/665 (40%), Positives = 387/665 (58%), Gaps = 18/665 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  + N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKV-NNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GSEIDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G  Y+  F N G  D  L   G      GT V FLP  
Sbjct: 118 HGVGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRE +FL   V+ISL D R   P +    Y+ GI+ FV YL+  
Sbjct: 178 TIFSTTKFSYEILAERLRESAFLLKGVKISLSDLRGEVPVKEIFHYEEGIKEFVDYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+ 
Sbjct: 238 KDTLTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKS 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV+
Sbjct: 297 YNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + +++ +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 NVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY +++G+  + V +    +D    +I +     +       G ++   L     
Sbjct: 536 IALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-- 593

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +D   +           +          +  +     + + +   L       +K 
Sbjct: 594 ---TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKK 650

Query: 653 WHGSI 657
               I
Sbjct: 651 EDTEI 655



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 378 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 498 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 557

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 558 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 616

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 617 VTTLMGDKVEPRRKWIENH 635


>gi|257867817|ref|ZP_05647470.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC30]
 gi|257874144|ref|ZP_05653797.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC10]
 gi|257801900|gb|EEV30803.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC30]
 gi|257808308|gb|EEV37130.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC10]
          Length = 677

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 270/663 (40%), Positives = 383/663 (57%), Gaps = 19/663 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M    + + Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MGLAKKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +V DNGRG+P   H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 60  GNEIDVTIHKDNSISVRDNGRGMPVGTHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSSWL++ I R+G  Y+ SF + G     L   G     TGT VTF P  
Sbjct: 119 HGVGASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDD 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRE +FL   V+ISL D+R  EP      Y+ GI+ FV YL+  
Sbjct: 179 TIFSATKFSYEILAERLRESAFLLKGVKISLTDERGEEPIHEVFLYEEGIKEFVDYLNEE 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L Q  +   G+++ I ++LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+ 
Sbjct: 239 KDTLTQ-VVYFSGTKEAIEVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTK KL +   R+ V+
Sbjct: 298 FNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARNAVD 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + + + L  +L+E+   ++++V+K + A   R+AAR+AR+   T +K     + L GKL 
Sbjct: 358 NVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLLSGKLT 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 418 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 477

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 478 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 536

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    +   ++Y   ++ L            +       G ++ + L    
Sbjct: 537 IALPPLYKVSKGLGKKAVVEYAWTDDELSKLTQKIGKGY-MLQRYKGLGEMNADQLWET- 594

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                +D   +           +          +  +     + + +   L       +K
Sbjct: 595 ----TMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFSLEEDGSILDK 650

Query: 652 SWH 654
              
Sbjct: 651 KED 653



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/64 (62%), Positives = 55/64 (85%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   + LMGD+VEPRR++
Sbjct: 573 KGYMLQRYKGLGEMNADQLWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKW 632

Query: 792 IQEN 795
           I+ +
Sbjct: 633 IENH 636


>gi|153814924|ref|ZP_01967592.1| hypothetical protein RUMTOR_01139 [Ruminococcus torques ATCC 27756]
 gi|317500436|ref|ZP_07958660.1| DNA gyrase, subunit B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089557|ref|ZP_08338456.1| hypothetical protein HMPREF1025_02039 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847955|gb|EDK24873.1| hypothetical protein RUMTOR_01139 [Ruminococcus torques ATCC 27756]
 gi|316898191|gb|EFV20238.1| DNA gyrase, subunit B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404925|gb|EGG84463.1| hypothetical protein HMPREF1025_02039 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 640

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 254/620 (40%), Positives = 361/620 (58%), Gaps = 14/620 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N++YDA SI +L+GL+AV+KRP MYIG      GL+H+IYE++DN++DE L G+   I V
Sbjct: 4   NNTYDAGSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNSVDEHLAGFCTEIRV 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DG+ TV+DNGRGIP D+H++ GISAA ++ T LHAGGKF+  +YK SGGLHGVG S
Sbjct: 63  VLEKDGTATVTDNGRGIPVDMHQK-GISAARLVFTTLHAGGKFDDSAYKTSGGLHGVGSS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSDI 181
           VVNALS+++ ++I R+G +Y   +  G+    L        G     TGT + FLP   I
Sbjct: 122 VVNALSTYMDVKISRDGAVYHDRYERGVPVIELENGLLPKIGKTK-KTGTTINFLPDDTI 180

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F  + ++ RL E ++LN  + I   DKR  +   I      GI  F+  L++ K+
Sbjct: 181 FEKTKFRAEEVKSRLHETAYLNPELTIIFEDKRGDQTEHIEYHEPEGIIGFIRDLNKKKE 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   P+  +G  D I ++ A ++ + +HENVL F NNI   +GGTHL+G ++  T  + 
Sbjct: 241 ALH-EPVYFKGEADGIEVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVMN 299

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +    V     
Sbjct: 300 QYAREIGILKEKDTNFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKAVGKVAG 359

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D +  + + +    K ++     A+ +R    +A+     K      S  GKLA+C  RD
Sbjct: 360 DEIVLYFDRNLDVLKTVLSSAEKAAKIRKTEEKAKTNLLTKQKYSFDS-NGKLANCESRD 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I A 
Sbjct: 419 PKKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINAF 478

Query: 482 GTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI  
Sbjct: 479 GCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIAM 538

Query: 539 PPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           PPLY    +    +Y+ D+++LE Y         ++ +     + ++      +D   ++
Sbjct: 539 PPLYKAMPKSGEEEYLYDDKALEKYRRTHKGPFTLQRYKGLGEMDAEQLWETTLDPKRRL 598

Query: 598 DKLIKDFYPNHDKTFIEQAV 617
            KL++           E  +
Sbjct: 599 LKLVEIEDARMASGVTEMLM 618



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 52/74 (70%), Gaps = 3/74 (4%)

Query: 732 KG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLR-VKITDASQADDLFSRLMGDEVEPRR 789
           KG  ++QRYKGLGEM+A QLWETTL+P  R LL+ V+I DA  A  +   LMG EV PRR
Sbjct: 568 KGPFTLQRYKGLGEMDAEQLWETTLDP-KRRLLKLVEIEDARMASGVTEMLMGTEVPPRR 626

Query: 790 EFIQENSLPSALDI 803
            FI EN+  + LDI
Sbjct: 627 AFIYENATEAELDI 640


>gi|50379869|gb|AAT76295.1| DNA gyrase subunit B [Fusobacterium canifelinum]
          Length = 522

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 249/526 (47%), Positives = 355/526 (67%), Gaps = 6/526 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + +   SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY
Sbjct: 1   MEEIM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V +  +    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGL
Sbjct: 57  CNKIEVKILPENIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVGVSVVNALS WL++ +++ G +Y   +  G  +  + + GS    + GT V F    
Sbjct: 117 HGVGVSVVNALSEWLEVEVRKNGVVYYQKYHRGKPEEDVKIIGSCDEGEHGTIVRFKADG 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           DIF    +NY TL +RL+EL++LN  + I L D R  E +E    + GGI  F++ + + 
Sbjct: 177 DIFETLIYNYFTLSNRLKELAYLNKGLTIVLSDLRKEEKKEEIYKFDGGILDFLNEIVKE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +  +++ P  +   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ 
Sbjct: 237 EATIIEKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I    +     K     ++G+D REG   ++S K+P P+F  QTK KL +SEV  +V + 
Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L  +LE++P   KII++K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ 
Sbjct: 357 VSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +  ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++T
Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           A GT IG+  FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M
Sbjct: 477 AFGTSIGET-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYM 521


>gi|257898812|ref|ZP_05678465.1| gram positive topoisomerase IV [Enterococcus faecium Com15]
 gi|257836724|gb|EEV61798.1| gram positive topoisomerase IV [Enterococcus faecium Com15]
          Length = 681

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 271/665 (40%), Positives = 387/665 (58%), Gaps = 18/665 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  + N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKV-NNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GSEIDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G  Y+  F N G  D  L   G      GT V FLP  
Sbjct: 118 HGVGASVVNALSKWLTVTIVRDGIEYQQKFKNGGKPDGTLKKIGKTRKANGTIVHFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRE +FL   V+ISL D R  E  +    Y+ GI+ FV YL+  
Sbjct: 178 TIFSTTKFSYEILAERLRESAFLLKGVKISLSDLRGEESVKEVFHYEEGIKEFVDYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+ 
Sbjct: 238 KDTLTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKS 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV+
Sbjct: 297 YNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + +++ +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 NVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY +++G+  + V +    +D    +I +     +       G ++   L     
Sbjct: 536 IALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-- 593

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +D   +           +          +  +     + + +   L       +K 
Sbjct: 594 ---TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKK 650

Query: 653 WHGSI 657
               I
Sbjct: 651 EDAEI 655



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 378 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 498 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 557

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 558 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 616

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 617 VTTLMGDKVEPRRKWIENH 635


>gi|253681222|ref|ZP_04862020.1| DNA gyrase, B subunit [Clostridium botulinum D str. 1873]
 gi|253562460|gb|EES91911.1| DNA gyrase, B subunit [Clostridium botulinum D str. 1873]
          Length = 636

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 296/617 (47%), Positives = 421/617 (68%), Gaps = 11/617 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   YD   IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DN+IDE+L G+   I 
Sbjct: 3   KKQVYDESQIQVLEGLEAVRKRPGMYIGST-GIRGLHHLVYEIVDNSIDEALAGFCQNIK 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V ++ D S TV D+GRG+P  +H +      EVIMT LHAGGKF    YKVSGGLHGVG 
Sbjct: 62  VYIHKDNSVTVKDDGRGMPVGIHPKMKRPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS + K+ ++REG+I+   +  G + + L + G + ++ GT V F P  +IF   
Sbjct: 122 SVVNALSKYCKVEVRREGHIWMQEYKKGKVASELEIIGDS-DEKGTLVYFEPDDEIFEEV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YDTL HRLREL+FLN  ++I+LID+R  E ++    Y+GGI++FVSYL+R+K+ L +
Sbjct: 181 QFDYDTLAHRLRELAFLNKGIRITLIDEREEEKKQE-FHYEGGIKSFVSYLNRNKQTLHE 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++G++D+  +++A+++ND Y++N+  F NNI   +GGTHL+G +SALTR +  Y  
Sbjct: 240 DPIYVEGNKDDYLVEVALQYNDTYNDNIFAFANNIDTIEGGTHLAGFKSALTRALNDYAR 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           +    K+  +++ GDD REG T+V+S+K+ DP+F  QTK KL ++EVR +V+S V + +S
Sbjct: 300 RYGYLKEADKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNTEVRGIVDSIVFERVS 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P  AK +++K L A+  R+AA++AR+LTRRK VL+  +LPGKLADCS +DP + 
Sbjct: 360 EFLEENPNTAKTVIEKSLTAARAREAAKKARELTRRKSVLESTALPGKLADCSSKDPSEC 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+ R DK+L+S++I  +ITA G GI
Sbjct: 420 EIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIRAMITAFGAGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D FDI K+RYH+IIIMTDADVDGAHI TLLLTFF+R M  L+  G +YI +PPLY + 
Sbjct: 480 GKD-FDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVEGGHVYIAQPPLYQVK 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK ++Y   +  L+  L             D    I +      +D     D  +   +
Sbjct: 539 KGKIIRYSYSDNELQQVLTEIGGK-------DKNTEIQRYKGLGEMDATQLWDTTMNPEH 591

Query: 606 PNHDKTFIEQAVISGVF 622
               K  I+ A+ +   
Sbjct: 592 RTLVKVTIDDAMRADEI 608



 Score =  170 bits (431), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 16/239 (6%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
               +   + +  I + D         +  +             +E+  +  + N E  +
Sbjct: 410 DCSSKDPSECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIR 469

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
            +  +  + +    +    +  +           ++      V    +      F +   
Sbjct: 470 AMITAFGAGIGKDFDIEKIRYHR-----------IIIMTDADVDGAHIATLLLTFFYRYM 518

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISMQRYKGLGEM 745
            + +    +       L  +  G  I+ +   + L  + +   G+ K   +QRYKGLGEM
Sbjct: 519 RELVEGGHVY-IAQPPLYQVKKGKIIRYSYSDNELQQVLTEIGGKDKNTEIQRYKGLGEM 577

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +A+QLW+TT+NP+ R+L++V I DA +AD++F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 578 DATQLWDTTMNPEHRTLVKVTIDDAMRADEIFTILMGDKVEPRREFIEENAKRVVNLDI 636


>gi|319440154|ref|ZP_07989310.1| DNA gyrase subunit B [Corynebacterium variabile DSM 44702]
          Length = 686

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 270/648 (41%), Positives = 381/648 (58%), Gaps = 43/648 (6%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y AD I IL+GL+AV+KRP MYIG T  E GLHH+I+EV+DN++DE++ G+AD + V
Sbjct: 16  SGDYGADQITILEGLEAVRKRPGMYIGSTS-ERGLHHLIWEVVDNSVDEAMAGFADHVEV 74

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGS  VSDNGRGIP ++H   G    +V+MT LHAGGKF+ ++Y VSGGLHGVG+S
Sbjct: 75  TLKDDGSVQVSDNGRGIPVEMHP-TGRPTVQVVMTELHAGGKFDSQAYAVSGGLHGVGIS 133

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ ++  I+R+G ++   F + I    L     A   +GT   F    +IF    
Sbjct: 134 VVNALSTRVETEIRRDGYLWHQVFDHSIP-EELEQVKKA-RGSGTTQRFWADPEIFETTT 191

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------------- 214
           +N+DT+  RL+E++FLN  + I+L D+R                                
Sbjct: 192 YNFDTVSRRLQEMAFLNKGLTITLTDERRQVIEQVEDLEDAAADEAAAPKTADEEAEEQK 251

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
             +P+ R     Y  G++ +V +L++ K P+  + I ++   D+  +++A++WN GY ++
Sbjct: 252 KDAPKVRTKVFHYPDGLKDYVDHLNKSKTPVHPTVIDLEVKGDDHEVEIALQWNSGYSQS 311

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       K  + ++ GDDCREG  +V+S+
Sbjct: 312 VHTFANTINTVEGGTHEEGFRAALTSLMNRYARDHKMLKDKEPNLTGDDCREGLAAVISV 371

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           ++ DP+F  QTK KL +SE++  V+   N+ ++ W + +P EAK IV K + ++  R AA
Sbjct: 372 RVGDPQFEGQTKTKLGNSEIKGFVQKATNEHVADWFDANPAEAKAIVNKAVSSAQARVAA 431

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDL RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILP
Sbjct: 432 RKARDLVRRKSATDLGGLPGKLADCRSKDPVKSEIYIVEGDSAGGSAKSGRDSMFQAILP 491

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDINKLRYHKI++M DADVDG H
Sbjct: 492 LRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDINKLRYHKIVLMADADVDGQH 550

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEE 571
           I TLLLT  +R M  LI  G +Y+  PPLY +  GK    +   +   +  L     +  
Sbjct: 551 IATLLLTLLYRFMRPLIEEGHVYLAMPPLYKLKWGKGEPGFAFSDAERDAQLAEGLAAGR 610

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
                D             ++     +  +        K  +E A  +
Sbjct: 611 KINKDDGIQRYKG---LGEMNAKELWETTMDPQDRILKKVTLEDAADA 655



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 6/82 (7%)

Query: 727 FSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
            + GRK I+    +QRYKGLGEMNA +LWETT++P  R L +V + DA+ AD+ F+ LMG
Sbjct: 606 LAAGRK-INKDDGIQRYKGLGEMNAKELWETTMDPQDRILKKVTLEDAADADETFAVLMG 664

Query: 783 DEVEPRREFIQENSLPSA-LDI 803
           D+V  RR FI  N+     LD+
Sbjct: 665 DDVVARRSFITRNAKDVRFLDV 686


>gi|154483927|ref|ZP_02026375.1| hypothetical protein EUBVEN_01633 [Eubacterium ventriosum ATCC
           27560]
 gi|149735418|gb|EDM51304.1| hypothetical protein EUBVEN_01633 [Eubacterium ventriosum ATCC
           27560]
          Length = 643

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 293/592 (49%), Positives = 404/592 (68%), Gaps = 6/592 (1%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M +N    + Y AD IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G
Sbjct: 1   MGNNTNVENEYGADQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I V +N D S TV D+GRGIPTD++ + G  A EV+ T LHAGGKF    YKVSGG
Sbjct: 60  YCDTIDVQINEDNSITVRDDGRGIPTDINTKTGKPAVEVVFTVLHAGGKFGGGGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPS 178
           LHGVG SVVNALS WL++++ R G ++   +  G +  PL V G    + TGTEV FLP 
Sbjct: 120 LHGVGASVVNALSKWLEVKVCRGGKVHYQKYEYGKVVEPLTVIGDCNPDFTGTEVKFLPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF    ++Y TL+ RLRE +FL  +++I L D R  +P E T  Y+GGI+ FV+YL++
Sbjct: 180 DTIFEDTVYDYKTLEIRLRETAFLTKNLKIVLRDVREEKPIEKTFHYEGGIKEFVNYLNK 239

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L    I  +G+ +N+ +++AM+ ND Y EN L F NNI   +GGT + G + A+T+
Sbjct: 240 GKQELYDDVIYCEGTVNNVYVEVAMQHNDAYTENTLSFVNNINTPEGGTQVEGFKRAITK 299

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
              +Y +++   K+++ ++ GDD REG T+++S+K+ DP+F  QTK+KL +SE R+ VE 
Sbjct: 300 TFNNYAKQNKILKENEENLSGDDFREGLTAIISVKIEDPQFEGQTKQKLGNSEARAAVEG 359

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +++ L+ +LE++P  AKII +K + A   RDAAR+AR+ T RK  L +A+LPGKLADCS
Sbjct: 360 VMSEQLTYYLEQNPAIAKIICEKAVLAKRARDAARKAREAT-RKTALSVAALPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           +++P+  E+F+VEGDSAGGSAK+ R+R  QAILPLRGKILNVE+AR DK++ + EI T+I
Sbjct: 419 DKNPENCEIFIVEGDSAGGSAKKARTRATQAILPLRGKILNVEKARIDKIMDNAEIRTMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGI Q+ FDI KLRY+KIIIMTDADVDGAHI TL+LTFF+R MP LI +G +Y+  
Sbjct: 479 TAFGTGI-QEDFDITKLRYNKIIIMTDADVDGAHIDTLMLTFFYRFMPELIKDGHVYLAM 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           PPLY +TR K   Y   ++ L   L       +         G +  + L  
Sbjct: 538 PPLYQVTRNKKNYYAYSDDELNQILTEIGRDNQNKIQRYKGLGEMDASQLWE 589



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 4/105 (3%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRS 761
            +  +  N           L   +  IGR   + +QRYKGLGEM+ASQLWETT++P+TR 
Sbjct: 539 PLYQVTRNKKNYYAYSDDELNQILTEIGRDNQNKIQRYKGLGEMDASQLWETTMDPNTRI 598

Query: 762 LLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L +VKI +   S+ D  F+ LMGD+VEPRREFI+ N+     LDI
Sbjct: 599 LKQVKIDEDKLSEMDQTFTILMGDDVEPRREFIEANAKFVKNLDI 643


>gi|22536796|ref|NP_687647.1| DNA gyrase subunit B [Streptococcus agalactiae 2603V/R]
 gi|25010667|ref|NP_735062.1| DNA gyrase subunit B [Streptococcus agalactiae NEM316]
 gi|161486746|ref|YP_329336.2| DNA gyrase subunit B [Streptococcus agalactiae A909]
 gi|22533641|gb|AAM99519.1|AE014219_11 DNA gyrase, B subunit [Streptococcus agalactiae 2603V/R]
 gi|23095021|emb|CAD46247.1| DNA gyrase, subunit B [Streptococcus agalactiae NEM316]
 gi|319744658|gb|EFV97005.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           agalactiae ATCC 13813]
          Length = 650

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 273/628 (43%), Positives = 406/628 (64%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEETKNMEQRAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFAGHIKVYIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +++ + G ++   +  G++ N L + G   + +GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR  +  E    Y+GGI ++V 
Sbjct: 179 TPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKEYHYEGGIGSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +++ +K+ + ++PI   G  D IS+++AM++  GY E V+ F NNI   +GGTH  G R+
Sbjct: 239 FINENKEVIFENPIYTDGELDGISVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++  + +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  + + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD++K+RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVSKVRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+ +  S      +  +         + +      SK  + +      +DD 
Sbjct: 538 YIAQPPIYGV-KVGSEIKAYIQPGVNQ-EEELRQALDTYSSGRSKPTVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I + I  G   +       LDT +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 548 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHQLWETTMDPE 605

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+ N++ S LDI
Sbjct: 606 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEANAVYSNLDI 650


>gi|297564812|ref|YP_003683784.1| DNA gyrase subunit B [Meiothermus silvanus DSM 9946]
 gi|296849261|gb|ADH62276.1| DNA gyrase, B subunit [Meiothermus silvanus DSM 9946]
          Length = 645

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 280/647 (43%), Positives = 397/647 (61%), Gaps = 16/647 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS ++  + YDA +I++LKGL+ V+ RP+MYIG T    G HH+  E+LDN++DE+L GY
Sbjct: 1   MSTDLA-AQYDASAIKVLKGLEGVRHRPAMYIGGTQA-DGYHHLFKEILDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I  TL+ DGS TV DNGRGIP D+  EEG  A E+I T LHAGGKF + +YKVSGGL
Sbjct: 59  ATEIITTLHPDGSITVEDNGRGIPVDIMPEEGKPAVEIIYTVLHAGGKFEEGAYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNAL+ + ++ + R+G  Y + F  G +  PL   G+A    GT VTFLP + 
Sbjct: 119 HGVGASVVNALAEYTRVEVFRDGKHYLIEFSRGEVTKPLTQIGTAKGKRGTRVTFLPDAT 178

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     F    +++RLRE+SFL + +++   D+   +      F KGG+ +F  +L   
Sbjct: 179 IFDPGLKFEASRIRNRLREVSFLVAGLRLVFKDEVHQKE--EVFFDKGGVASFAKFLAEG 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++ L + P+ +QG  D +S+++ +    GY   ++ + N IP KDGGTH+SG ++A TR 
Sbjct: 237 EEALYEKPVLLQGEVDVVSVEVGLIHTKGYSNQLVSYANMIPTKDGGTHISGFKTAYTRA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y +K+    K      GDD  EG + V+S+K+P P+F  QTK KL++ E  + V   
Sbjct: 297 INAYAKKAG-LVKGDLEPTGDDLLEGVSCVISVKIPQPQFEGQTKGKLLNPEAGTAVSKV 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ WLEE+P  AK+I +K   A+  R+AAR+AR+L RRK  L+   LPGKLADC  
Sbjct: 356 VYEKLTDWLEENPRAAKLIYEKAQRAAQAREAARKARELVRRKDALESDELPGKLADCQS 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP ++ELF+VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K L + E+  ++ 
Sbjct: 416 EDPAEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLGKALKNAEVRAMVA 475

Query: 480 ALGTGI----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           A+G GI     +  F++  LRYHKIIIMTDADVDG+HIRTLLLTFF+R M  ++  G+LY
Sbjct: 476 AIGAGIDSNVEEAHFNLEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPILEGGYLY 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQS--LSEEIELFCDSKGVISKNDLRN 589
           I +PPLY +     +   +QY+ ++E+L++ +       S E++ F     +  +     
Sbjct: 536 IAQPPLYRLQVGGGKNAKVQYLFNDEALKEAIAKLPERTSYEVQRFKGLGEMNPEQLWET 595

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +D A ++ K +      +     E  +   V       E N   A 
Sbjct: 596 TMDPAKRVLKQVTMEDALYANEIFEALMGQDVAPRREFIEENARFAQ 642



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
           +   E  ++        ++      V    +      F +      +    +      + 
Sbjct: 483 SNVEEAHFNLEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPILEGGYLYIAQPPLY 542

Query: 706 SLICNGDK----IKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTR 760
            L   G K      +    +L + I  +  +    +QR+KGLGEMN  QLWETT++P  R
Sbjct: 543 RLQVGGGKNAKVQYLFNDEALKEAIAKLPERTSYEVQRFKGLGEMNPEQLWETTMDPAKR 602

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            L +V + DA  A+++F  LMG +V PRREFI+EN+  + LD+
Sbjct: 603 VLKQVTMEDALYANEIFEALMGQDVAPRREFIEENARFAQLDV 645


>gi|258646055|ref|ZP_05733524.1| DNA gyrase, B subunit [Dialister invisus DSM 15470]
 gi|260403425|gb|EEW96972.1| DNA gyrase, B subunit [Dialister invisus DSM 15470]
          Length = 649

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 299/642 (46%), Positives = 406/642 (63%), Gaps = 10/642 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
               S Y A  I++L+GL+AV+ RP MYIG T    GLHH++YEV+DN+IDE+L G+   
Sbjct: 15  ENGKSDYGAKDIRVLEGLEAVRLRPGMYIGSTSA-RGLHHLVYEVVDNSIDEALAGFCTH 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VTLN DGSCT++DNGRGIPT LH E G  A EV++T LHAGGKF    Y +SGGLHGV
Sbjct: 74  IEVTLNDDGSCTITDNGRGIPTGLH-ETGKPAMEVVLTVLHAGGKFGGDGYPISGGLHGV 132

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVV ALS W  + +KREG+ +EM    G++   +   G       T+VTF P  +IF 
Sbjct: 133 GISVVTALSEWTTVTVKREGHFHEMKLARGVVTQHMKTFGETTETG-TQVTFKPDGEIFK 191

Query: 184 V-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              DF+YDTL+ R+REL+FLN  + I+L D R     +    Y GGI  F+ +L+  K  
Sbjct: 192 EGTDFDYDTLKVRMRELAFLNKGLTITLTDVRDGATHQDVFCYAGGIVEFIKFLNEGKDL 251

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +    I  +G +D + +D+AM++  GY E++  F NNI   +GG HL+G R+ALTR I  
Sbjct: 252 VDPGVISFEGEKDRVIVDIAMQYQAGYSESMYTFVNNINTVEGGMHLTGFRNALTRTIND 311

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y   +   K ++ ++ GDD REG T V+S+K+P+P+F  QTK KL + +V+ +V++ V+D
Sbjct: 312 YARSNNLLKPNEENLSGDDVREGLTCVISVKVPNPQFEGQTKTKLGNQDVKGIVDTIVSD 371

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           GL  +LEEHP EAK I+ K + A+  R+AARRAR+LTRRK  L+++SLPGKLADCSE+DP
Sbjct: 372 GLRTYLEEHPAEAKEIISKSITANRAREAARRARELTRRKNALEVSSLPGKLADCSEKDP 431

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           K +E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR DK+L+S  I T+ITA G
Sbjct: 432 KFTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKARLDKVLNSDAIRTMITAFG 491

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG+  + FDI KLRY+KIIIMTDADVDGAHIRTLLLTFF+R M  LI  G +YI +PPLY
Sbjct: 492 TGV-AEDFDIKKLRYYKIIIMTDADVDGAHIRTLLLTFFYRYMKPLITEGHVYIAQPPLY 550

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + +G+   Y  D+   +  L                G ++   L +       ++   +
Sbjct: 551 QVRKGRQKYYTYDDVEQDKLLNEIGRDGCAIQRYKGLGEMNPEQLWDT-----TMNPEQR 605

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +E   +  +   +  +     +     N  N 
Sbjct: 606 VMLKVELTDAVEADRLFTILMGDKVEPRRKFIEDNAKNVSNL 647



 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 3/125 (2%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSI-GRKGISMQR 738
            + +F  +Y +                     + K      +  D + +  GR G ++QR
Sbjct: 524 LLLTFFYRYMKPLITEGHVYIAQPPLYQVRKGRQKYYTYDDVEQDKLLNEIGRDGCAIQR 583

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLW+TT+NP+ R +L+V++TDA +AD LF+ LMGD+VEPRR+FI++N+  
Sbjct: 584 YKGLGEMNPEQLWDTTMNPEQRVMLKVELTDAVEADRLFTILMGDKVEPRRKFIEDNAKN 643

Query: 799 S-ALD 802
              LD
Sbjct: 644 VSNLD 648


>gi|315223358|ref|ZP_07865217.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga
           ochracea F0287]
 gi|314946689|gb|EFS98678.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga
           ochracea F0287]
          Length = 658

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 281/604 (46%), Positives = 391/604 (64%), Gaps = 21/604 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   ++ Y AD+IQ L+G++ V+ RPSMYIGD     GLHH++YEVLDN+IDE+L GY D
Sbjct: 8   EQQNSAEYSADNIQSLEGMEHVRMRPSMYIGDVS-TRGLHHLVYEVLDNSIDEALAGYCD 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I+VT+N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHG
Sbjct: 67  TISVTINEDNSITVEDNGRGIPVDVHKKEGVSALQVVMTKIGAGGKFDKGSYKVSGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVS VNALS  L   + R+G I++  +  G+   P+   G   +  GT+VTF P   IF
Sbjct: 127 VGVSCVNALSDHLTATVYRDGKIWQQEYQRGVAMYPVKQVGDT-DKRGTKVTFHPDEVIF 185

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLD 237
                + YDTL  R+REL++LN  + I+L D R+ +          + + G++ FV +LD
Sbjct: 186 EQTIEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKGNFITEKFYSQNGLKEFVKFLD 245

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            ++ P++ + I + G ++ I +++AM +ND Y+EN+  + NNI   +GGTHL G R  LT
Sbjct: 246 GNRMPIIGNVIAMDGEKNGIPVEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGFRMGLT 305

Query: 298 RQITSYVEKSFGSKKDKRSVI------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           R + +Y +KS   +K  +         GDD REG T+V+S+K+ +P+F  QTK KL + E
Sbjct: 306 RTLKAYADKSGLLEKMNKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTKLGNRE 365

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V S V   V   L  +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+    LP
Sbjct: 366 VTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMSGGGLP 425

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCSE DP K ELFLVEGDSAGG+AKQGR+++ QAILPLRGKILNVE+A   K+  S
Sbjct: 426 GKLADCSEEDPAKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKILNVEKAMQHKVFDS 485

Query: 472 QEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            EI  + TALG  +G +        +KLRYHK+IIM DADVDG+HI TL+LTFFFR M  
Sbjct: 486 DEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFFRYMRE 545

Query: 528 LIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           LI NG +YI  PPLY       K  +Y  +++  +   ++  +           G ++ +
Sbjct: 546 LIENGHVYIATPPLYLVKSKNSKREEYAWNDKQRDA--LSAEMGNVNIQRYKGLGEMNDH 603

Query: 586 DLRN 589
            L +
Sbjct: 604 QLWD 607



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 57/69 (82%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +++QRYKGLGEMN  QLW+TT+NP+ R+L +V I +A++AD +FS LMGDEV PRREFI+
Sbjct: 589 VNIQRYKGLGEMNDHQLWDTTMNPEHRTLRQVTIDNATEADRVFSMLMGDEVPPRREFIE 648

Query: 794 ENSLPSALD 802
           +N+  + +D
Sbjct: 649 KNAKYAKID 657


>gi|317495092|ref|ZP_07953463.1| DNA gyrase, subunit B [Gemella moribillum M424]
 gi|316914799|gb|EFV36274.1| DNA gyrase, subunit B [Gemella moribillum M424]
          Length = 643

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 285/591 (48%), Positives = 392/591 (66%), Gaps = 7/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +  Q   Y+AD IQ+L+GL+AV+ RP MYIG T    GLHH+++E++DN+IDE+L GY
Sbjct: 6   MVEKKQIQEYNADQIQVLEGLEAVRVRPGMYIGSTSS-RGLHHLVWEIVDNSIDEALAGY 64

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + ITV +  D    V DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 65  CNTITVAIEKDNWIRVEDNGRGIPIDIQEQTGKPALEVILTVLHAGGKFGGGGYKVSGGL 124

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ L+  + R+G I+ M F  G +   + V G   + TGT V F    +
Sbjct: 125 HGVGASVVNALSTNLEAYVHRDGKIHSMKFERGEVVQGITVIGET-DKTGTTVRFKADPE 183

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     + YD L+ R+REL+FLN  + I L D+R  + +E    Y+GG+  +V  L+ +
Sbjct: 184 IFQETTVYEYDILRSRIRELAFLNKGITIVLKDERENQEKEEDFCYEGGLLEYVEMLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    I + G  +   ++++M++N GY  N+L + NNI   +GGTH SG ++ALTR 
Sbjct: 244 KDALH-EAIYVHGEMEGKEVEISMQYNTGYSSNILSYANNINTHEGGTHESGFKTALTRI 302

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y +K+    K+K ++ GDD REG  +++SIK P+P+F  QTK KL +SE+ ++    
Sbjct: 303 INAYGKKNK-LIKEKETLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKL 361

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++ L  +L E+P  AKIIV+K L AS  R AA++AR+ TRRK  L+  +LPGKLADCS 
Sbjct: 362 FSEELDRFLLENPKVAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPGKLADCSS 421

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  + ELFLVEGDSAGGSAK GR  + QAILPL+GKILNVE+ R DK+LSS EI +LIT
Sbjct: 422 KDAAECELFLVEGDSAGGSAKLGRDSKFQAILPLKGKILNVEKVRIDKVLSSDEIRSLIT 481

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG+   +++KLRYHKI+IMTDADVDG+HIRTLLLTFFFR M  LI  G++YI +P
Sbjct: 482 AVGMGIGETL-NMDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYVYIARP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PLYG+  GK   Y   EE L+ ++   +  ++         G ++  +L +
Sbjct: 541 PLYGLKVGKKEYYCHTEEELKQHIEEFAGDKKYAVQRYKGLGEMNAEELWD 591



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 13/193 (6%)

Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672
           +E+  I  V + +  + +  ++   +   LN    +  K           +V      V 
Sbjct: 462 VEKVRIDKVLSSDEIRSLITAVGMGIGETLNMDKLRYHK-----------IVIMTDADVD 510

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGR 731
              +      F F    + I +  +      +  L     +        L   I    G 
Sbjct: 511 GSHIRTLLLTFFFRYMRELIDAGYVYIARPPLYGLKVGKKEYYCHTEEELKQHIEEFAGD 570

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K  ++QRYKGLGEMNA +LW+TT++P  R + +V I DA +AD  F  LMG++VEPRR+F
Sbjct: 571 KKYAVQRYKGLGEMNAEELWDTTMDPKHRLMYQVSIGDAQRADAAFDTLMGEKVEPRRKF 630

Query: 792 IQENSLPS-ALDI 803
           I+EN+L    LDI
Sbjct: 631 IEENALNVINLDI 643


>gi|227551202|ref|ZP_03981251.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|293377175|ref|ZP_06623383.1| DNA topoisomerase IV, B subunit [Enterococcus faecium PC4.1]
 gi|227179670|gb|EEI60642.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|292644195|gb|EFF62297.1| DNA topoisomerase IV, B subunit [Enterococcus faecium PC4.1]
          Length = 692

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 271/662 (40%), Positives = 385/662 (58%), Gaps = 17/662 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   
Sbjct: 14  KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGV
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F N G  D  L   G      GT V FLP   IF
Sbjct: 132 GASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTIF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F+Y+ L  RLRE +FL   V+ISL D R  EP +    Y+ GI+ FV YL+  K  
Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEVFHYEEGIKEFVDYLNEEKDT 251

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+    
Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV++ +
Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL    
Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549

Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PPLY +++G+  + V +    +D    +I +     +       G ++   L        
Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            +D   +           +          +  +     + + +   L       +K    
Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDT 664

Query: 656 SI 657
            I
Sbjct: 665 EI 666



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 628 VTTLMGDKVEPRRKWIENH 646


>gi|187918301|ref|YP_001883864.1| DNA gyrase subunit B [Borrelia hermsii DAH]
 gi|119861149|gb|AAX16944.1| DNA gyrase subunit B [Borrelia hermsii DAH]
          Length = 639

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 277/584 (47%), Positives = 408/584 (69%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 7   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 65

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 66  NSDNSVTVNDNGRGIPTDVHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L + + R+G +++ ++  GI  + + + G +    GT+VTFL  S+IF   +++
Sbjct: 126 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIGVSS-ARGTKVTFLADSEIFETLEYD 184

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ D+RS + + +  +++GGI+AFV Y+  + K +   P 
Sbjct: 185 FETLSKRLRELAFLNDKIRISIEDRRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPY 244

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+GS D++ + + ++W +GY +++L F NNI  ++GGTH++G +S   + ++     S 
Sbjct: 245 FIEGSCDDVIVSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSK 304

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  S+  DD +EG T+V+SIK+P+P+F  QTK KL +S V+ +VE+ V+DGL   +
Sbjct: 305 ISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLKVI 364

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           +++ LE  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 365 DDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPAEREIY 424

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R +QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 425 IVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 484

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI NG +YI  PPLY +    
Sbjct: 485 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKLKYEN 543

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
              Y  D+   E +L +       +         G ++   L  
Sbjct: 544 REHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWE 587



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG--PCSLLDTIFSIGRK-GISMQ 737
             F F    + I +  +      +  L     +                  G++  +S+Q
Sbjct: 513 LTFFFRYMRELIENGHVYIAMPPLYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQ 572

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT+NP TR +  +KI DA QA+ +F  LMGD+VEPRREFI++N+L
Sbjct: 573 RYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLMGDDVEPRREFIEQNAL 632

Query: 798 P-SALDI 803
               LD+
Sbjct: 633 DVVNLDV 639


>gi|288932528|ref|YP_003436588.1| DNA gyrase subunit beta [Ferroglobus placidus DSM 10642]
 gi|288894776|gb|ADC66313.1| DNA gyrase, B subunit [Ferroglobus placidus DSM 10642]
          Length = 621

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 276/582 (47%), Positives = 398/582 (68%), Gaps = 14/582 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A+ I++L  L+AV+KRP MYIG   G  GLHH+++EV+DN++DE L GY   I V 
Sbjct: 2   EEYTAEQIEVLSDLEAVRKRPGMYIGGV-GIRGLHHLLWEVIDNSVDEHLAGYCSRIRVV 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V D+GRGIPT++H   G  A E++MT+LHAGGKF++K+YKVSGGLHGVG+SV
Sbjct: 61  LHRDGSASVEDDGRGIPTEMHP-LGKPALEIVMTKLHAGGKFSKKAYKVSGGLHGVGLSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS W+++ +KR G IY   +  G+   PL + G   N+TGT V F P  +IF   +F
Sbjct: 120 VNALSEWVEVIVKRNGKIYRQRYERGVPVTPLEIIGET-NETGTYVRFKPDEEIFETTEF 178

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            YD + HRLREL++LN  +++ L D+RS +      + + GI  FV +L+ +++  +   
Sbjct: 179 RYDIVAHRLRELAYLNKGLKLELYDERSGKK--EEFYSERGIVEFVEHLNANRE-KISDV 235

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I I G R+ IS+++A+++ +   E +L + NNI   +GGTH+ G R+ALTR I  Y +K+
Sbjct: 236 IYISGERNGISVEVALQYTNTDFETILAYANNIHNVEGGTHVVGFRAALTRAINEYGKKN 295

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
               K+ + + G D REG T+V+S+K+P+P+F  QTK KL +SEV++ VE+ V   L  W
Sbjct: 296 ---VKNFKPITGVDVREGLTAVISVKVPEPQFEGQTKTKLSNSEVKTAVETIVYSELMRW 352

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            EEHP +A  I++K + A+  R+AA+RARD+ +R+    +A+LPGKLADCS ++P++ EL
Sbjct: 353 FEEHPEQANKIIEKCILAAKAREAAKRARDVIKRREE--VATLPGKLADCSSKNPEEREL 410

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEG+SAGGSAKQ R R  QAILP+RGKI+NVE+A   ++L + EI  +I A+G G G+
Sbjct: 411 FIVEGESAGGSAKQARDRRFQAILPIRGKIINVEKAGMVRVLKNDEIKAIIAAIGAGFGK 470

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FDI K RY +IIIMTDAD+DGAHIRTLLLTFF+R M  LI NG+LYI +PPLY + +G
Sbjct: 471 D-FDIKKARYRRIIIMTDADIDGAHIRTLLLTFFYRYMRPLIENGYLYIAQPPLYRVKKG 529

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           K + Y+  ++ LE+  + + + +         G ++   L  
Sbjct: 530 KKVYYLYSDKELEN--LLKRIGDAEVQRYKGLGEMNPEQLWE 569



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 10/153 (6%)

Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFS----FGSKYKR-IFSNRIEENYLTILSLICNG 711
            + DI   R  R +      ++G+ I +    F  +Y R +  N         L  +  G
Sbjct: 470 KDFDIKKARYRRIIIMTDADIDGAHIRTLLLTFFYRYMRPLIENGYLYIAQPPLYRVKKG 529

Query: 712 DKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
            K+  +     L + +  IG     +QRYKGLGEMN  QLWETT++P  R L++V + DA
Sbjct: 530 KKVYYLYSDKELENLLKRIG--DAEVQRYKGLGEMNPEQLWETTMDPKRRILIQVTLEDA 587

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
           + A+++ S LMG+  E R+ FI E++     LD
Sbjct: 588 AMAEEIVSILMGENTEDRKRFIMEHATEVRNLD 620


>gi|326518120|dbj|BAK07312.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 722

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 371/598 (62%), Gaps = 11/598 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +      Y A ++Q+L+ LD V+KRP MYIG T G  GLHH++YE+LDNA+DE+  GY
Sbjct: 73  MQEKRVAGEYTAANVQVLEALDGVRKRPGMYIGST-GPRGLHHLVYEILDNAVDEAQAGY 131

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK--SYKVSG 118
           A  I V L+ D S +V+DNGRGIPTD+H +   S  E ++T +HAGGKF     SY V+G
Sbjct: 132 ATEINVVLHDDNSVSVTDNGRGIPTDIHPQTKKSCVETVLTLMHAGGKFGGSTSSYSVAG 191

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTF 175
           GLHGVG+SVVNALS  L++ + R+G  Y   +  G     L  T     + +  G+ + F
Sbjct: 192 GLHGVGLSVVNALSEALEVTVCRDGKEYRQHYSRGKPLTMLSSTTLPDESSSRQGSCIRF 251

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLI-DKRSPEPREITMFYKGGIEAFV 233
            P  +IF+    F++ T+  R+REL+FLN  + I+L  +++  + +     Y GG+  +V
Sbjct: 252 WPDKEIFTTTIEFDFSTISSRIRELAFLNPELTITLTKEEQDAQVQHNEYCYAGGLVEYV 311

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++L+  KKPL   PI  +   D I +D++++W  D Y + VL + N+I   DGGTH+ GL
Sbjct: 312 AWLNTDKKPLH-DPIAFRKELDGIIVDVSLQWCSDSYSDTVLGYANSIRTIDGGTHIEGL 370

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +++LTR I ++ +KS   K    S+ G+  REG T ++S+K+P+P F  QTK +L + EV
Sbjct: 371 KTSLTRTINNFAKKSKIMKDKDISLSGEHVREGMTCIISVKVPNPEFEGQTKTRLGNPEV 430

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R +VE  V + L+ +LE HP     I+ K L+A     AA+RAR+L R K VL  +SLPG
Sbjct: 431 RRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPG 490

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC+  +P + E+F+VEGDSAGGSAKQGR R+ QAILPLRGKILN+ER     M  ++
Sbjct: 491 KLADCASSNPAECEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIERRDEAAMYKNE 550

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI  LI  LG G+  + F    LRYHKI+I+TDADVDGAHIRTLLLTFFFR   +L   G
Sbjct: 551 EIQNLILGLGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQRALFDEG 610

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            +Y+  PPLY + RGK + Y  DE  L+D +     +           G +    L  
Sbjct: 611 CIYVGVPPLYKVERGKQVHYCYDEADLKDLVNTFPTNASYNTQRFKGLGEMMPLQLWE 668



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 119/336 (35%), Gaps = 39/336 (11%)

Query: 502 IMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEE 557
           IM D D+   G H+R  +      ++P+    G        P +  I      + + +  
Sbjct: 387 IMKDKDISLSGEHVREGMTCIISVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYL 446

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID----------------------DAL 595
            L   +++  LS+ +     +       +L                           +  
Sbjct: 447 ELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSNPAECEIF 506

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKSE 650
            ++           +    QA++       + +  + +   K     N I       K E
Sbjct: 507 IVEGDSAGGSAKQGRDRKFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGE 566

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
                ++    I++      V    +      F F  +   +F        +  L  +  
Sbjct: 567 DFKKEALRYHKIVIL-TDADVDGAHIRTLLLTFFFRYQRA-LFDEGCIYVGVPPLYKVER 624

Query: 711 GDKI----KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
           G ++           L++T  +      + QR+KGLGEM   QLWETT++P+ R L ++ 
Sbjct: 625 GKQVHYCYDEADLKDLVNTFPTNA--SYNTQRFKGLGEMMPLQLWETTMDPERRLLKQLT 682

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           + DA +A+ +FS LMG  VE R+E IQ+ +    LD
Sbjct: 683 VEDAVEANVVFSSLMGARVEYRKELIQKAASIVNLD 718


>gi|260584261|ref|ZP_05852008.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633]
 gi|260157779|gb|EEW92848.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633]
          Length = 645

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 281/594 (47%), Positives = 405/594 (68%), Gaps = 8/594 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++  +    + YDA  IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L
Sbjct: 1   MTEENKEVLAAQYDASQIQVLEGLEAVRKRPGMYIGSTSSA-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I + +  +    V+D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFATHIEIEITPENHIRVTDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L +++ ++GNIYE S+  G +   L + G      GT V F+P
Sbjct: 120 GGLHGVGASVVNALSTDLTVQVFKDGNIYEQSYKRGAVLEDLKIVGQTE-KHGTSVYFVP 178

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     ++++ L +R+REL+FLN  +++++ D R  EP   T +Y+GGI+++V +L
Sbjct: 179 DPEIFQETTVYDFEKLANRVRELAFLNKGLKLTITDLRVEEPVVKTFYYEGGIKSYVEHL 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           ++ K+ L + PI ++G +D I +++AM++  GYH N+L FTNNI   +GGTH SG+++AL
Sbjct: 239 NKSKQVLFEEPIYVEGEQDGIQVEVAMQYTSGYHTNLLSFTNNIHTYEGGTHESGMKTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  +    K+++  + G+D REG T+V+SIK PDP+F  QTK KL +SE R++ 
Sbjct: 299 TRVINDYARRQKLMKENEEKLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEARTIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +         +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 DRLFATHFDKFLMENPQVARKIVEKGILASKARLAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  DP  SE+F+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  DK+L++ EI +
Sbjct: 419 CSSNDPSVSEIFIVEGDSAGGSAKQGRSRHFQAILPIRGKILNVEKASLDKILANDEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G D FD++K RYHK++IMTDADVDGAHIRTLL+T F+R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGGD-FDLSKARYHKLVIMTDADVDGAHIRTLLITLFYRYMRPVVEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            +PPLY + +GK   Y++++E LE  L     S +         G +    L  
Sbjct: 538 AQPPLYKLKQGKQEFYIQNDEELEAKLKELPASPKPQISRYKGLGEMDAEQLWE 591



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
            +  L     +  I     L   +  +       + RYKGLGEM+A QLWETT+NP  RS
Sbjct: 541 PLYKLKQGKQEFYIQNDEELEAKLKELPASPKPQISRYKGLGEMDAEQLWETTMNPQNRS 600

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL--PSA-LDI 803
           +L+V + DA++AD +   LMGD+VEPRREFI+ NS       LDI
Sbjct: 601 MLQVTVEDAAEADQVLDMLMGDKVEPRREFIEANSKFIDVNDLDI 645


>gi|6647532|sp|Q9ZFK1|GYRB_BORHE RecName: Full=DNA gyrase subunit B
 gi|3859564|gb|AAC72846.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317666|gb|AAT99954.1| DNA gyrase subunit B [Borrelia hermsii DAH]
 gi|51317668|gb|AAT99955.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317670|gb|AAT99956.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317672|gb|AAT99957.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317674|gb|AAT99958.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317676|gb|AAT99959.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317678|gb|AAT99960.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317680|gb|AAT99961.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317682|gb|AAT99962.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317684|gb|AAT99963.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317686|gb|AAT99964.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317688|gb|AAT99965.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317690|gb|AAT99966.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317692|gb|AAT99967.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317694|gb|AAT99968.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317696|gb|AAT99969.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317698|gb|AAT99970.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317700|gb|AAT99971.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|112031373|gb|ABH88159.1| GyrB [Borrelia hermsii]
 gi|112031377|gb|ABH88161.1| GyrB [Borrelia hermsii]
          Length = 634

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 277/584 (47%), Positives = 408/584 (69%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NSDNSVTVNDNGRGIPTDVHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L + + R+G +++ ++  GI  + + + G +    GT+VTFL  S+IF   +++
Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIGVSS-ARGTKVTFLADSEIFETLEYD 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ D+RS + + +  +++GGI+AFV Y+  + K +   P 
Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDRRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+GS D++ + + ++W +GY +++L F NNI  ++GGTH++G +S   + ++     S 
Sbjct: 240 FIEGSCDDVIVSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  S+  DD +EG T+V+SIK+P+P+F  QTK KL +S V+ +VE+ V+DGL   +
Sbjct: 300 ISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLKVI 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           +++ LE  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E++
Sbjct: 360 DDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPAEREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R +QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI NG +YI  PPLY +    
Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKLKYEN 538

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
              Y  D+   E +L +       +         G ++   L  
Sbjct: 539 REHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWE 582



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG--PCSLLDTIFSIGRK-GISMQ 737
             F F    + I +  +      +  L     +                  G++  +S+Q
Sbjct: 508 LTFFFRYMRELIENGHVYIAMPPLYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT+NP TR +  +KI DA QA+ +F  LMGD+VEPRREFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLMGDDVEPRREFIEQNAL 627

Query: 798 P-SALDI 803
               LD+
Sbjct: 628 DVVNLDV 634


>gi|327489313|gb|EGF21106.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK1058]
          Length = 649

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 279/627 (44%), Positives = 405/627 (64%), Gaps = 10/627 (1%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++  Q       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L++ EI 
Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANGEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  GF+Y
Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +       +        SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +   +    +  ++ A  +   
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 634 RREFIEENAVYSTLDV 649


>gi|256389238|ref|YP_003110802.1| DNA gyrase subunit B [Catenulispora acidiphila DSM 44928]
 gi|256355464|gb|ACU68961.1| DNA gyrase, B subunit [Catenulispora acidiphila DSM 44928]
          Length = 661

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 275/645 (42%), Positives = 390/645 (60%), Gaps = 12/645 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y+ADSI +L+GL+AV+KRP MYIG T GE GLHH++YE++DN++DE++ GYAD I V L 
Sbjct: 18  YNADSISVLEGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNSVDEAMAGYADTIEVWLL 76

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DG   V DNGRGIP  ++ + G SA EV+MT LHAGGKF    YKVSGGLHGVGVSVVN
Sbjct: 77  ADGGVKVVDNGRGIPVGINTKTGKSALEVVMTILHAGGKFGDGGYKVSGGLHGVGVSVVN 136

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALSS +++ +  +G ++   + +G+ +  +   G A  DTGT   F    DIF    +++
Sbjct: 137 ALSSRVEVEVHTDGFVWNQVYKHGVPETEVQKGGPAA-DTGTSTIFWADVDIFETTVYSF 195

Query: 190 DTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY-LDRHKKP 242
           +TL  R +E++FLN  + ISL D+R      + E R +    +GGI  FV +   R  +P
Sbjct: 196 ETLSRRFQEMAFLNKGLTISLTDERPEFRDENGEQRSVKYHAEGGIADFVRHINSRKGEP 255

Query: 243 LMQSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +  + I  +G   + ++  ++A++WN  Y E++  F NNI    GGTH  G R+ALT  I
Sbjct: 256 VHPNVIDFEGEDKDRTLAAEIALQWNSQYSESIYTFANNINTHGGGTHEEGFRAALTTLI 315

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y       K+   ++ G+D REG T+++S+K+ +P+F  QTK+KL + E ++ V+  V
Sbjct: 316 NKYARDQKLLKEKDDNLAGEDIREGLTTIVSVKLAEPQFEGQTKDKLGNPEAKTFVQRLV 375

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  WLEE+P EA+ +++K + AS  R AAR+AR+LTRRKG+L+ +SLPGKL+DC   
Sbjct: 376 YEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRRKGLLESSSLPGKLSDCQSN 435

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP K+E+F+VEGDSAGGSA+ GR    QAILP+RGKILNVE+AR DK+L + E+  LI+A
Sbjct: 436 DPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVEKARIDKVLQNTEVQALISA 495

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTG+  D FDI++LRYHKII+M DADVDGAHI TLLLT  FR M  L+  G +Y+  PP
Sbjct: 496 LGTGV-HDDFDISRLRYHKIILMADADVDGAHINTLLLTLLFRFMKPLVEAGHVYLAAPP 554

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY +    +       +   D L+   +        ++          N  +  +     
Sbjct: 555 LYKVKWTNNDFNYAYSDRERDQLLEAGVGAGKRRKDETVQRFKGLGEMNAEELRITTMDR 614

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
                         QA          D E   +   + A  + F+
Sbjct: 615 EHRILRQVTLDDAAQADDLFSVLMGEDVEARRNFIQRNAKDVRFL 659



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 7/87 (8%)

Query: 724 DTIFSIG------RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +   G      RK  ++QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 575 DQLLEAGVGAGKRRKDETVQRFKGLGEMNAEELRITTMDREHRILRQVTLDDAAQADDLF 634

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 635 SVLMGEDVEARRNFIQRNAKDVRFLDI 661


>gi|256820281|ref|YP_003141560.1| DNA gyrase, B subunit [Capnocytophaga ochracea DSM 7271]
 gi|256581864|gb|ACU92999.1| DNA gyrase, B subunit [Capnocytophaga ochracea DSM 7271]
          Length = 658

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 282/604 (46%), Positives = 394/604 (65%), Gaps = 21/604 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   ++ Y AD+IQ L+G++ V+ RPSMYIGD  G  GLHH++YEVLDN+IDE+L GY D
Sbjct: 8   EQQNSAEYSADNIQSLEGMEHVRMRPSMYIGDV-GTRGLHHLVYEVLDNSIDEALAGYCD 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I+VT+N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHG
Sbjct: 67  TISVTINEDNSITVEDNGRGIPVDVHKKEGVSALQVVMTKIGAGGKFDKGSYKVSGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVS VNALS  L   + R+G I++  +  G+   P+   G+  +  GT+VTF P   IF
Sbjct: 127 VGVSCVNALSDHLTATVYRDGKIWQQEYQRGVAMYPVKQVGNT-DKRGTKVTFHPDEVIF 185

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLD 237
                + YDTL  R+REL++LN  + I+L D R+ +          + + G++ FV +LD
Sbjct: 186 EQTIEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKGNFITEKFYSQNGLKEFVKFLD 245

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            ++ P++ + I + G ++ I +++AM +ND Y+EN+  + NNI   +GGTHL G R  LT
Sbjct: 246 GNRMPIIGNVIAMDGEKNGIPVEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGFRMGLT 305

Query: 298 RQITSYVEKSFGSKKDKRSVI------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           R + +Y +KS   +K  +         GDD REG T+V+S+K+ +P+F  QTK KL + E
Sbjct: 306 RTLKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTKLGNRE 365

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V S V   V   L  +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+    LP
Sbjct: 366 VTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMSGGGLP 425

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCSE DP+K ELFLVEGDSAGG+AKQGR+++ QAILPLRGKILNVE+A   K+  S
Sbjct: 426 GKLADCSEEDPEKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKILNVEKAMQHKVFDS 485

Query: 472 QEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            EI  + TALG  +G +        +KLRYHK+IIM DADVDG+HI TL+LTFFFR M  
Sbjct: 486 DEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFFRYMRE 545

Query: 528 LIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           LI NG +YI  PPLY       K  +Y  +++  +   ++  +           G ++ +
Sbjct: 546 LIENGHVYIATPPLYLVKSKNSKREEYAWNDKQRDA--LSAEMGNVNIQRYKGLGEMNDH 603

Query: 586 DLRN 589
            L +
Sbjct: 604 QLWD 607



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 57/69 (82%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +++QRYKGLGEMN  QLW+TT+NP+ R+L +V I +A++AD +FS LMGDEV PRREFI+
Sbjct: 589 VNIQRYKGLGEMNDHQLWDTTMNPEHRTLRQVTIDNATEADRVFSMLMGDEVPPRREFIE 648

Query: 794 ENSLPSALD 802
           +N+  + +D
Sbjct: 649 KNAKYAKID 657


>gi|72388575|gb|AAZ67931.1| DNA gyrase subunit B [Psychrobacter faecalis]
          Length = 721

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 316/721 (43%), Positives = 429/721 (59%), Gaps = 51/721 (7%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+ D I + ++ D S +V DNGRG+P D+H EEG+SAA+VIMT LHAGGKF   SYKVSG
Sbjct: 1   GHCDQIDIIIHEDESVSVLDNGRGVPVDIHPEEGVSAAQVIMTVLHAGGKFEDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L++ I REG  Y  ++ +G+ D  +     A + TGT++ F PS
Sbjct: 61  GLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADIQQ-MEATDKTGTQIRFYPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +D+F+   F YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FVSY++ 
Sbjct: 120 NDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSYINA 177

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  + +         D IS+++A++W D Y+E VLCFTNNIPQ+DGGTHLSG RSALTR
Sbjct: 178 GKDGINEVFHFTSEQDDGISVEVALQWTDTYNEKVLCFTNNIPQRDGGTHLSGFRSALTR 237

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY+++    KK+K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES
Sbjct: 238 GLNSYMDRENLFKKEKIVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVES 297

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            ++D  + +L E+P   K I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC 
Sbjct: 298 AMHDKFNDYLLENPSAGKAIANKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQ 357

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+G LI
Sbjct: 358 EKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLI 417

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P LI  G++YI +
Sbjct: 418 TALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQ 477

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY + +G+   Y+KD+E+L+ YL++ ++             I+   L   ++D  +  
Sbjct: 478 PPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTKLHISADAPAITGQALETLLNDYNQTQ 537

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNF------------ 644
            +       +    ++    +   + +   +     +  + L  +L              
Sbjct: 538 LIKARLQIRYPAVLLDALTHTPKLSTDMTYDKSVMEAWKASLQTQLEHFGSDLNPEIELV 597

Query: 645 ----------------------IAEKSEKSWHGSINNS-------DILVKRIARGVQEQF 675
                                 + E  E       ++S          +      +   +
Sbjct: 598 NIHAPQPKNMDAAAADLLGMTAVVELDESETSADDSDSLSAKAQWLPRITVYVHQLAHHY 657

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-----DKIKITGPCSLLDTIFSIG 730
           +L+ S I S         S            +          KI +     L   +   G
Sbjct: 658 LLDASFINSGEYTKLLRLSAEWNTLLAEEAFIRREASAGTTKKIPVRDFDYLWQQMMLSG 717

Query: 731 R 731
           R
Sbjct: 718 R 718


>gi|291523173|emb|CBK81466.1| DNA topoisomerase IV subunit B [Coprococcus catus GD/7]
          Length = 640

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 253/615 (41%), Positives = 361/615 (58%), Gaps = 14/615 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SY+ADSI +L+GL+AV+KRP MYIG      GL+H++YE++DN++DE L G+   I V
Sbjct: 4   TNSYNADSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLVYEIVDNSVDEHLAGFCSEIHV 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TLN DGS TVSDNGRGIP  +HK+ GISA  ++ T LHAGGKF+  +YK SGGLHGVG S
Sbjct: 63  TLNKDGSATVSDNGRGIPVGMHKK-GISAERLVFTTLHAGGKFDDSAYKTSGGLHGVGSS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----TGSAGNDTGTEVTFLPSSDI 181
           VVNALS WL + + REG  Y   +  G+   PL        G     TGT ++FLP  +I
Sbjct: 122 VVNALSEWLDVTVSREGCTYHDRYERGVPTIPLEKGLLPVIGRT-RKTGTTISFLPDKEI 180

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F  D ++ RL E ++LN  + I   DKR     +       G+  F+  L+R+K+
Sbjct: 181 FEKTWFKEDEIKSRLHETAYLNPELTIIYEDKRVTPEEQEVYHEPDGLAGFIRDLNRNKE 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L    +  +G  + I+++ A ++ + +HENVL F NNI   +GGTH++G +SA T  + 
Sbjct: 241 ALH-DIVCFKGESEGITVEGAFQYVNEFHENVLGFCNNIYNAEGGTHITGFKSAFTSIMN 299

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y  +    K+   +  G D R G T+V+SIK PDPRF  QTK KL + +        VN
Sbjct: 300 AYAREIGILKEKDGNFTGADIRNGMTAVISIKHPDPRFEGQTKTKLDNQDAARATGKIVN 359

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + +  + +++    K+++     A+ +R    +AR     K      S  GKLA+C  R+
Sbjct: 360 EEVVRYFDKNLDTLKVVLSCAEKAAKIRKTEEKARTNLLTKQKFSFDS-NGKLANCESRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
               E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I + 
Sbjct: 419 ADICEIFIVEGDSAGGSAKTARNRHFQAILPIRGKILNVEKASIDKILANAEIKTMINSF 478

Query: 482 GTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           G G  +   + FDI+KLRY+KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI  
Sbjct: 479 GCGFSEGYGNDFDISKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIAM 538

Query: 539 PPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           PPLY         +Y+ D+++LE Y      +  ++ +     + +       ++   +I
Sbjct: 539 PPLYKAMPSKGREEYLYDDKALEQYRKTHKGNFTLQRYKGLGEMDAAQLWETTLNPETRI 598

Query: 598 DKLIKDFYPNHDKTF 612
            K ++          
Sbjct: 599 LKKVEIEDARIASDI 613



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 128/373 (34%), Gaps = 48/373 (12%)

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT--DADVDGAHIRTLLLTFFFRQMPSL 528
           +           TG       I      +I I+   D +  GA IR  +      + P  
Sbjct: 276 NNIYNAEGGTHITGFKSAFTSIMNAYAREIGILKEKDGNFTGADIRNGMTAVISIKHPDP 335

Query: 529 IHNGFLYI------IKPPLYGITRGKSLQYVKDE----------------------ESLE 560
              G                 I   + ++Y                          ++  
Sbjct: 336 RFEGQTKTKLDNQDAARATGKIVNEEVVRYFDKNLDTLKVVLSCAEKAAKIRKTEEKART 395

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
           + L  Q  S +      +    + +    FI +        K     H +  +   +   
Sbjct: 396 NLLTKQKFSFDSNGKLANCESRNADICEIFIVEGDSAGGSAKTARNRHFQAIL--PIRGK 453

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +   +++   +N       + +    + S +   +I   +     ++G+
Sbjct: 454 ILNVEKASIDKILANAEIKTMINSFGCGFSEGYGNDFDISKLRYNKII--IMADADVDGA 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----------CNGDKIKITGPCSLLDTIFSIG 730
            I +       +F   + E        I            G +  +      L+      
Sbjct: 512 HISTLL---LTLFYRFMPELIYEGHVYIAMPPLYKAMPSKGREEYLYD-DKALEQYRKTH 567

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           +   ++QRYKGLGEM+A+QLWETTLNP+TR L +V+I DA  A D+   LMG +V PR+ 
Sbjct: 568 KGNFTLQRYKGLGEMDAAQLWETTLNPETRILKKVEIEDARIASDITGLLMGPDVPPRKA 627

Query: 791 FIQENSLPSALDI 803
           FI +++  + LDI
Sbjct: 628 FIYKHAHDAELDI 640


>gi|289565127|ref|ZP_06445580.1| DNA topoisomerase IV, B subunit [Enterococcus faecium D344SRF]
 gi|294614810|ref|ZP_06694705.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1636]
 gi|294617489|ref|ZP_06697120.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1679]
 gi|289163134|gb|EFD10981.1| DNA topoisomerase IV, B subunit [Enterococcus faecium D344SRF]
 gi|291592272|gb|EFF23886.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1636]
 gi|291596229|gb|EFF27491.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1679]
          Length = 692

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 270/662 (40%), Positives = 384/662 (58%), Gaps = 17/662 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   
Sbjct: 14  KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGV
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F N G  D  L   G      GT V FLP   IF
Sbjct: 132 GASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F+Y+ L  RLRE +FL   V+ISL D R   P +    Y+ GI+ FV YL+  K  
Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEVPVKEIFHYEEGIKEFVDYLNEEKDT 251

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+    
Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV++ +
Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL    
Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549

Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PPLY +++G+  + V +    +D    +I +     +       G ++   L        
Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
            +D   +           +          +  +     + + +   L       +K    
Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDT 664

Query: 656 SI 657
            I
Sbjct: 665 EI 666



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 628 VTTLMGDKVEPRRKWIENH 646


>gi|256370829|ref|YP_003108653.1| DNA gyrase, B subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007413|gb|ACU52980.1| DNA gyrase, B subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 647

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 287/615 (46%), Positives = 383/615 (62%), Gaps = 13/615 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SY A  I +L+GL+ V+ RP MYIG T G SGLHH+++EV+DNA+DE + G    I V
Sbjct: 13  EASYTAADIVVLEGLEHVRLRPGMYIGST-GPSGLHHLVWEVVDNAVDEVMAGACTEIDV 71

Query: 67  TLNMDGSCTVSDNGRGIPTDLHK-EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           T+  DG C V DNGRGIP D H  +   SAAEV++T+L+AGGKF    YKVSGGLHGVGV
Sbjct: 72  TILADGGCRVEDNGRGIPVDPHPSDPSKSAAEVVLTQLNAGGKFGTGGYKVSGGLHGVGV 131

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALS+ L L + R+G+ Y M F+ G     PL   GS+G   GT VTF P   IF  
Sbjct: 132 SVVNALSARLVLEVHRDGSTYRMEFVKGGTPTGPLERIGSSGGRRGTVVTFWPDPTIFED 191

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+   +  RL+ ++FLN  V +   D+R     E T  Y GGI  FV +L+  K PL 
Sbjct: 192 TEFSAQRILERLQVIAFLNKGVVVRFRDERPGREHEQTFSYAGGIVDFVRHLNEPKGPLF 251

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                   S +++ +++A  WN  ++E +  F N I  ++GG H  G R ALT+ I  Y 
Sbjct: 252 AKVGYYAASEEDMEVEVAFSWNTTFYETLFTFANGISTEEGGMHAEGFRKALTQVINRYA 311

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K+   ++ G+D REG T+++S+++ +P+F  QTK KL +  VRS VE   N+ L
Sbjct: 312 RARNLLKERDENLEGNDIREGMTTIVSVRLVNPQFEGQTKTKLGNVSVRSFVERVTNEHL 371

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WLEE+P EA+ IV+K + A   R AAR+AR+LTRRK  L+ A LPGKL DC+ RDP +
Sbjct: 372 ATWLEENPREAQAIVQKAIVAQRARLAARQARELTRRKSGLESAGLPGKLTDCTSRDPSE 431

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEG+SAGG+  +GR  + QA+LP+RGKILNVERAR DKMLS+QEI +LI A+G G
Sbjct: 432 SELFIVEGNSAGGTTIKGRDPKTQAVLPIRGKILNVERARLDKMLSNQEIQSLIAAIGAG 491

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           +G D FDI K RYHK+II+ DAD DG+HIRTLLLTFFFRQM  L+  G +Y  +PPLY  
Sbjct: 492 VG-DEFDIKKARYHKVIILADADPDGSHIRTLLLTFFFRQMRPLVEAGMVYAAQPPLYST 550

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             G    Y+K+E     +L      ++  L     G +  ++LR         D  +   
Sbjct: 551 LLGTEKVYIKNEAERLRFLEAHPNHKKPFLRLKGLGEMDFDELR---------DTTLHQD 601

Query: 605 YPNHDKTFIEQAVIS 619
                K  IEQA I+
Sbjct: 602 RRTLLKVTIEQAAIA 616



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R KGLGEM+  +L +TTL+ D R+LL+V I  A+ AD++ S LMGD+VE RR FIQEN+
Sbjct: 581 RLKGLGEMDFDELRDTTLHQDRRTLLKVTIEQAAIADEVCSVLMGDDVEQRRRFIQENA 639


>gi|290792686|gb|ADD63785.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|290792694|gb|ADD63789.1| DNA gyrase subunit B [Borrelia hermsii]
          Length = 634

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 277/584 (47%), Positives = 407/584 (69%), Gaps = 6/584 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV
Sbjct: 61  NSDNSVTVNDNGRGIPTDVHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS+L + + R+G +++ ++  GI  + + + G +    GT+VTFL  S+IF   +++
Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIGVSS-ARGTKVTFLADSEIFETLEYD 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN  ++IS+ D+RS + + +  +++GGI+AFV Y+  + K +   P 
Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDRRSGKEKLLEFYFEGGIKAFVDYITNNSKNIQNEPY 239

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+GS D++ + + ++W +GY +++L F NNI  ++GGTH++G +S   + ++     S 
Sbjct: 240 FIEGSCDDVIVSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSK 299

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKKD  S+  DD +EG T+V+SIK+P+P+F  QTK KL +S V+ +VE+ V+DGL   +
Sbjct: 300 ISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLKVI 359

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           +++ LE  II+ K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P   E++
Sbjct: 360 DDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPADREIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR R +QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+ 
Sbjct: 420 IVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M  LI NG +YI  PPLY +    
Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKLKYEN 538

Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
              Y  D+   E +L +       +         G ++   L  
Sbjct: 539 REHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWE 582



 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  V    KL   +  +     K+++        ++      V    +    
Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLL 507

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG--PCSLLDTIFSIGRK-GISMQ 737
             F F    + I +  +      +  L     +                  G++  +S+Q
Sbjct: 508 LTFFFRYMRELIENGHVYIAMPPLYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN +QLWETT+NP TR +  +KI DA QA+ +F  LMGD+VEPRREFI++N+L
Sbjct: 568 RYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLMGDDVEPRREFIEQNAL 627

Query: 798 P-SALDI 803
               LD+
Sbjct: 628 DVVNLDV 634


>gi|332711757|ref|ZP_08431688.1| DNA gyrase subunit A [Lyngbya majuscula 3L]
 gi|332349735|gb|EGJ29344.1| DNA gyrase subunit A [Lyngbya majuscula 3L]
          Length = 867

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 292/870 (33%), Positives = 427/870 (49%), Gaps = 77/870 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 2   TSSYSADQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV+D+GRG+PTD H   G SA E +MT LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  DINSDGSVTVTDDGRGVPTDTHPTTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS W+ + + RE   +   +  G+    L+V       TGT V F P ++IF+   
Sbjct: 121 VVNALSEWVDVTVWREKKEHTQRYERGVPVTELLVKPYKKTKTGTSVNFKPDTEIFTGGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y TL  RLREL++LN+SV+I+  D R  EPR  T  Y+GGI+ +V+Y++R K  L +
Sbjct: 181 EFDYTTLSGRLRELAYLNASVRITFSDHRLEEPRVETYHYEGGIQEYVAYMNREKHALHE 240

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             I IQG R NI +++A++W  D Y +N+L F NNI   DGGTHL GL++ LTR + +  
Sbjct: 241 EIIYIQGERKNIQVEVALQWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNAIA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K+ + ++ G++ REG T V+S+K+P+P F  QTK KL ++EVR +V+S V + L
Sbjct: 301 RKRNKIKESESNLGGENIREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L+  P     I++K + A    +AARRAR+L RRK VL+ + LPGKLADCS RDP +
Sbjct: 361 TEYLDFRPQVVDTILEKAIQAYKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDPGE 420

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK----MLSSQEIGTLITA 480
           SE+F+VEGDSAGG               L  K L  E+A   +     +++     +   
Sbjct: 421 SEIFIVEGDSAGGCFSGETQVALADGRSLSFKELVAEQAMGKEHFCYTITNNGSIGIERI 480

Query: 481 LGTGIGQDSFDINKLRYHK--IIIMTDADV-----DGAHIRTLLLT------FFFRQMPS 527
           +   I + + ++ KL       II T  D      DG +   + LT        +R +  
Sbjct: 481 INPRITKANAEVIKLTLDNSETIICT-PDHRFMLQDGTYKPAVSLTPDDFLMPLYRPLAE 539

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY-LINQSLSEEIELFCDSKGVISKND 586
           +     +       Y    G   Q  +   +      +                    + 
Sbjct: 540 IRKQAKVKTQNKEAYSAVGGNQTQVCEAVANYNSVAELKYEFPYVGLWSSPLNPPTLGDF 599

Query: 587 LRN--------------------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                                         I+   ++  +     P+     +E  V   
Sbjct: 600 QSFVPPKIGGLGGQNHTQNQQSHYNYQVVSIEPLEQLVDVYDIEVPHTHNFALESGVFVH 659

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINNSDIL 663
               +       ++       LN       K +                     ++S++ 
Sbjct: 660 NSAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEEFDSSNLR 719

Query: 664 VKRIA----RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             RI       V    +      F +  +   +    I      +  L    +       
Sbjct: 720 YHRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYIYIACPPLYKLERGRNHNYCYSD 779

Query: 720 CSLLDTIF---SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
             L   I           ++QR+KGLGEM   QLW+TT+NP+TR++ +++I DA++AD +
Sbjct: 780 RELQQRISQFPDNA--NYNIQRFKGLGEMMPQQLWDTTMNPETRTMKQIEIEDAAEADRI 837

Query: 777 FSRLMGDEVEPRREFIQENS--LPSA-LDI 803
           F+ LMGD V PRR+FI+     L    LDI
Sbjct: 838 FTVLMGDRVAPRRQFIETYGARLNLNDLDI 867


>gi|300814729|ref|ZP_07094977.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511116|gb|EFK38368.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 639

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 284/592 (47%), Positives = 380/592 (64%), Gaps = 8/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YDA  IQ+LKGL+ V+KRP MYIG T GE GLHH++YEV+DN+IDE+L G 
Sbjct: 1   MAEK--KRHYDAGDIQVLKGLEPVRKRPGMYIGST-GEKGLHHLVYEVVDNSIDEALAGI 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I + +  DGSC V DNG GIP ++H + G S  E ++T LHAGGKF+ K+YKVSGGL
Sbjct: 58  CDHIKIVITKDGSCYVEDNGSGIPVEIHPQTGKSTVETVLTILHAGGKFDNKAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179
           HGVGVSVVNALS+ LK  IKR G IY   F  G   + L   G    N TGT++ F P  
Sbjct: 118 HGVGVSVVNALSTHLKATIKRNGKIYSQEFQRGKAISSLKEIGKVDKNQTGTKIEFTPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF   +F++D L  R RE++FLN  ++I   D+R  +                    + 
Sbjct: 178 EIFDTVEFSFDILSKRFREMAFLNKGIKIDFTDERINKNEIYHYEGGIKSFVEYINSKKK 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            +P+    I I   R+N SI++A+++   Y E VL F NNI  ++GG+HLSG RSA+T+ 
Sbjct: 238 YEPIHDEIIYIDEIRENTSIEVAIQYTKSYSEEVLTFANNINTEEGGSHLSGFRSAITKT 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  Y  K    K+ + ++ GDD REG T+VLS+K+P+P+F  QTK KL +SE + VV+S 
Sbjct: 298 VNDYGRKYNFIKEKEENLSGDDIREGMTAVLSVKLPNPQFEGQTKAKLGNSETKGVVDSV 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ LS +LEE+P  +K+I++K + A   RDAARRAR+++R K  L   +LPGKL DCS+
Sbjct: 358 VSEKLSMFLEENPKTSKVILEKAVAARRARDAARRAREISRAKNNL-DMTLPGKLFDCSD 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
              +KSE+FLVEG+SAGGSAK GR  E QA+LPLRGKI+NVE+A   KML+S EI  +IT
Sbjct: 417 VGSEKSEIFLVEGNSAGGSAKDGRDPEFQAVLPLRGKIMNVEKATEAKMLNSSEIKAMIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTG     FDI+KLRY+KIIIMTDADVDGAHI TLLLTFFFR M  LI NG +Y+ + 
Sbjct: 477 AFGTGY-SGEFDISKLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIENGHVYVAQA 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           PLYG+ +   +      E   +  +    SE+          G ++ + L  
Sbjct: 536 PLYGLEKNSKILRYCHNEEELNLALKAHESEKNINIKRYKGLGEMNYDQLWE 587



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 2/182 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   E  +  +S++   +          +  S    + ++      V    ++   
Sbjct: 454 IMNVEKATEAKMLNSSEIKAMITAFGTGYSGEFDISKLRYNKIIIMTDADVDGAHIMTLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFS-IGRKGISMQR 738
             F F      I +  +      +  L  N   ++       L   + +    K I+++R
Sbjct: 514 LTFFFRYMRPLIENGHVYVAQAPLYGLEKNSKILRYCHNEEELNLALKAHESEKNINIKR 573

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT+NPD R LLRV I D  + DD F  LMG EVEPRREFI EN+  
Sbjct: 574 YKGLGEMNYDQLWETTMNPDNRLLLRVNIEDFDETDDTFQMLMGQEVEPRREFISENAQY 633

Query: 799 SA 800
           + 
Sbjct: 634 AD 635


>gi|269217830|ref|ZP_06161684.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212765|gb|EEZ79105.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 693

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 268/615 (43%), Positives = 372/615 (60%), Gaps = 33/615 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  +YDA SI +L+GL+AV+KRP MYIG T GE GLHH +YEV+DN++DE+L G  D I 
Sbjct: 23  KGQAYDASSITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEVVDNSVDEALAGICDHIE 81

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+  DG   V DNGRGIP + H  E   A EV+MT LHAGGKF    Y VSGGLHGVGV
Sbjct: 82  VTILADGGLRVRDNGRGIPVNEHPTEHKPAVEVVMTILHAGGKFGNGGYAVSGGLHGVGV 141

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ ++  ++R+G ++ +SF NG+   PL   G   ++ GT  TF  + DIF   
Sbjct: 142 SVVNALSTRMETEVRRDGYVWRISFENGVPTGPLER-GEQTDEHGTTQTFWANPDIFETT 200

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDK-------------------RSPEPREITMFYK 226
            ++++TL+ R ++++FLN  ++I+L D+                    +P  R ++  Y 
Sbjct: 201 HYDFETLRRRFQQMAFLNKDLRITLTDERPTATPEGDEVVGETGEGSPTPGYRSVSYMYS 260

Query: 227 GGIEAFVSY--LDRHKKPLMQSPIRIQGSRDN--------ISIDLAMRWNDGYHENVLCF 276
           GG+  +V +    +  + +    +  +             +  ++AM+W   Y E +  F
Sbjct: 261 GGLLDYVKHLNTTKKVEVVHPDVVYFEAEDRERQIQCEVAMQCEVAMQWTSAYSETLNTF 320

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G RSALT  I  Y       K    ++ GDD REG T+++S+K+ +
Sbjct: 321 ANTINTTEGGTHEEGFRSALTSVINKYARDKGLLKDKDPNLSGDDIREGLTAIISVKLGN 380

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL ++E R+ V+  V   L+ WL+ HP EAK I++K L A   R AAR+AR
Sbjct: 381 PQFEGQTKTKLGNTEARTFVQQQVYSHLTDWLDMHPNEAKDIIRKALQAFAARAAARKAR 440

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           + TRRK VL+ AS+PGKL DC+ R+P++ E+F+VEGDSAGGSA  GR  E+QAI+P+RGK
Sbjct: 441 EATRRKSVLESASMPGKLKDCTSRNPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGK 500

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+AR D+ LSS  I  LITA GTGIG D FD+ KLRYHKI+ M DADVDG+HI TL
Sbjct: 501 ILNVEKARLDRALSSDTIQGLITAFGTGIG-DEFDMAKLRYHKIVFMADADVDGSHIATL 559

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELF 575
           LLT  +R M  LI  G +Y+  PPLY I    ++  YV  +   ++ L+           
Sbjct: 560 LLTLVYRYMRPLIEGGHVYLAMPPLYRIKWTNAVHDYVFSDRERDEKLVEGKDKGFRLPR 619

Query: 576 CDSKGVISKNDLRNF 590
            +S+ +     L   
Sbjct: 620 EESQRIQRYKGLGEM 634



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
               ++   +QRYKGLGEMNA +LW+TT+NP+ R+L +V I DA+  D+ FS LMG++VE
Sbjct: 619 REESQR---IQRYKGLGEMNAEELWDTTMNPEARTLKQVSIDDAAATDETFSILMGEDVE 675

Query: 787 PRREFIQENSLPSA-LDI 803
            RR FIQ N+     LDI
Sbjct: 676 SRRGFIQRNAHDVRFLDI 693


>gi|266620982|ref|ZP_06113917.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479]
 gi|288867363|gb|EFC99661.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479]
          Length = 636

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 290/585 (49%), Positives = 394/585 (67%), Gaps = 5/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D+I V
Sbjct: 2   SEEYGADQIQILEGLEAVRKRPGMYIGSTS-VRGLHHLVYEIVDNAVDEALAGYCDMIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+N D S TV D+GRGIP  + K+ GI A EV  T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  TINEDNSITVVDDGRGIPVGIQKKAGIPAVEVAFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+WL++ I ++G  Y+  +  G    PL V   A  ++ GT+VTFLP   IF   
Sbjct: 121 VVNALSNWLEVEITQDGKTYKQRYEKGKTMYPLKVIREAGPDEHGTKVTFLPDETIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YDTL+ RLRE +FL  +++I L D R  +   +   Y+GGI+ FV+YL+R K PL  
Sbjct: 181 VFDYDTLKIRLRETAFLTKNLKIVLRDNREEKHEHV-FHYEGGIKEFVTYLNRGKTPLYD 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +GS+D + ++++M+ ND Y EN+  F NNI   +GGTHLSG ++ALT  +  Y  
Sbjct: 240 QVFYCEGSKDGVYVEVSMQHNDSYTENIYSFVNNINTPEGGTHLSGFKNALTNTLNDYAR 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K+++ ++ G+D REG T+++S+K+ +P+F  QTK+KL +SE R  V++ + +  +
Sbjct: 300 NNKLLKENEANLSGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDNILREQFT 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK I  K + A   R AAR+ARDLTRRK  L+  +LPGKLADCS+++P+  
Sbjct: 360 YFLEQNPSVAKTICDKSIMAQRARAAARKARDLTRRKTALEGMALPGKLADCSDKNPENC 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  RSR+ QAILPLRGKILNVE+AR D++ S+ EI  +ITA GTGI
Sbjct: 420 EIYIVEGDSAGGSAKTARSRDTQAILPLRGKILNVEKARLDRIYSNAEIKAMITAFGTGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FDI+KLRY+KIIIMTDADVDGAHI TLLLTF +R MP LI  G +Y+ +PPLY + 
Sbjct: 480 HED-FDISKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGHVYLAQPPLYKVE 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           + K + Y   +E L + L                 G +    L  
Sbjct: 539 KNKKVWYAYSDEELNNILKEIGRDTNNKIQRYKGLGEMDAEQLWE 583



 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 4/105 (3%)

Query: 703 TILSLICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTR 760
             L  +    K+        L + +  IGR   + +QRYKGLGEM+A QLWETT++P+ R
Sbjct: 532 PPLYKVEKNKKVWYAYSDEELNNILKEIGRDTNNKIQRYKGLGEMDAEQLWETTMDPERR 591

Query: 761 SLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            LLRV   +  AS+ D  F+ LMGD+VEPRREFI+ N+    LDI
Sbjct: 592 ILLRVAFDEETASEIDLTFTTLMGDQVEPRREFIEANAKYGNLDI 636


>gi|153952676|ref|YP_001393441.1| DNA gyrase subunit B [Clostridium kluyveri DSM 555]
 gi|219853349|ref|YP_002470471.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016]
 gi|146345557|gb|EDK32093.1| GyrB1 [Clostridium kluyveri DSM 555]
 gi|219567073|dbj|BAH05057.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016]
          Length = 637

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 296/643 (46%), Positives = 416/643 (64%), Gaps = 12/643 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +  +YD + IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY D 
Sbjct: 3   QEKKQTYDENQIQILEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGYCDK 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S TV+DNGRG+P  +H +      EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 62  IDVVIHEDNSVTVADNGRGMPVGIHHKIKKPTVEVIMTILHAGGKFGGGGYKVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS   ++ +KRE ++++  F  G +   L + G +  + GT++ F P  +IF 
Sbjct: 122 GASVVNALSEICEVEVKREKHVWKQVFKRGKVATGLEIIGDSE-EHGTKIYFKPDKEIFD 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             DF+YD L  RLREL+FLN  + I+L D+RS +       Y+GGI++FV+YL+R+K+ +
Sbjct: 181 EVDFDYDMLSQRLRELAFLNKGIAITLKDERSGKE--ELFHYEGGIKSFVTYLNRNKQTI 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + PI ++G + + S+++A ++N+GY EN+  F NNI   +GGTHL+G +SALTR    Y
Sbjct: 239 HKEPIYVEGIKGDYSVEIAFQYNNGYSENIFSFANNIDTIEGGTHLAGFKSALTRVFNDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K    K++ +++ G+D REG T+V+SIK+ DP+F  QTK KL +SEVR +V++ + + 
Sbjct: 299 AKKFNILKENDKNLSGEDIREGITAVISIKLVDPQFEGQTKTKLGNSEVRGIVDNIMAES 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS +L+E+P  AK I+ K L AS  R+AAR+AR+LTRRK VL+  SLPGKLADCS +DP 
Sbjct: 359 LSDFLQENPQVAKTIIDKSLVASRAREAARKARELTRRKTVLENTSLPGKLADCSSKDPS 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E++LVEGDSAGGSAKQGR R  QAILPLRGKI+NVE+ R DK+L  +EI  +ITA G 
Sbjct: 419 ECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILGYEEIRAMITAFGA 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D FDI+K+RY+KIIIMTDADVDGAHIRTLLLTFF+R M  L+    +YI +PPLY 
Sbjct: 479 GIGKD-FDISKIRYNKIIIMTDADVDGAHIRTLLLTFFYRYMRELVEKCHVYIAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDDALKIDKLI 601
           + + K   Y   ++ L+  L                  G +    L +       ++   
Sbjct: 538 VAKNKKDYYAYSDKELDILLNEIGGKNSNVNIQRYKGLGEMDSEQLWDT-----TMNPET 592

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +     + +  I    I  +   +  +     +       +N 
Sbjct: 593 RTLIQVNVEDTIAADEIFTILMGDKVEPRKDFIIENAKKVVNL 635



 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 5/130 (3%)

Query: 679 GSSIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGI 734
            + + +F  +Y R    +         L  +    K         LD + +   G+   +
Sbjct: 508 RTLLLTFFYRYMRELVEKCHVYIAQPPLYKVAKNKKDYYAYSDKELDILLNEIGGKNSNV 567

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM++ QLW+TT+NP+TR+L++V + D   AD++F+ LMGD+VEPR++FI E
Sbjct: 568 NIQRYKGLGEMDSEQLWDTTMNPETRTLIQVNVEDTIAADEIFTILMGDKVEPRKDFIIE 627

Query: 795 NSLP-SALDI 803
           N+     LDI
Sbjct: 628 NAKKVVNLDI 637


>gi|67920055|ref|ZP_00513575.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501]
 gi|67857539|gb|EAM52778.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501]
          Length = 642

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 291/588 (49%), Positives = 395/588 (67%), Gaps = 4/588 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + S+Y A+ IQ+L+GLD V+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I
Sbjct: 2   TKKSNYGAEQIQVLEGLDPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +N DGS TV+DNGRGIPTD+H   G SA E +MT LHAGGKF    YKVSGGLHGVG
Sbjct: 61  EIDINADGSITVTDNGRGIPTDVHPTTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
           +SVVNALS W+ + + R+ NI+   +  GI    L       + TGT V+FLP   IFS 
Sbjct: 121 ISVVNALSEWVVVNVWRDNNIHTQRYERGIPLGSLDTKPDKKHSTGTSVSFLPDIQIFSG 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+Y TL  RL+EL++LN+ V+I+  D R  EP   T  Y+GGI+ +V+Y+ R K PL
Sbjct: 181 GIEFDYSTLAGRLKELAYLNAGVKITFTDHRKEEPYNETYCYEGGIKEYVTYMCRDKDPL 240

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            Q  I + G ++   +++A +   D Y +N+L F NNI   DGGTHL GL++ LTR + +
Sbjct: 241 HQDIIYVSGEKNGTQVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNN 300

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
              K    K++  ++ G++ REG T V+S+K+P+P F  QTK KL ++EVR +V+S V +
Sbjct: 301 VARKRNKLKENDANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGE 360

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +LE +P  A  I++K + A    +AARRAR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 361 VLTEYLEFNPQVADNIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDP 420

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           ++SE+FLVEGDSAGGSAKQGR R  QAILPLRGKI+N+E+    K+  + EI +LITALG
Sbjct: 421 EESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSLITALG 480

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  + FD  +LRYH+I+IMTDADVDGAHIRTLLLTFF+R   SL+  G++YI  PPLY
Sbjct: 481 LGIKGEEFDSEQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLY 540

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            + RG++  Y  +E  L++++ +   +           G +    L  
Sbjct: 541 KVERGRNHMYCYNERQLQEHINSLPNNANYTIQRFKGLGEMMPTQLWE 588



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTI--LSLI 708
              ++  +   RI   +     ++G+ I +    F  +Y+R   ++            + 
Sbjct: 486 EEFDSEQLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLYKVE 543

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
              + +       L + I S+      ++QR+KGLGEM  +QLWETT+NP+TRS+ +V+I
Sbjct: 544 RGRNHMYCYNERQLQEHINSLPNNANYTIQRFKGLGEMMPTQLWETTMNPETRSMKQVEI 603

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
            DA++AD +F+ LMGD V PRREFI+          LDI
Sbjct: 604 EDAAEADRIFTILMGDRVAPRREFIETYGPKLNLTDLDI 642


>gi|300934345|ref|ZP_07149601.1| DNA gyrase subunit B [Corynebacterium resistens DSM 45100]
          Length = 674

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 276/653 (42%), Positives = 390/653 (59%), Gaps = 38/653 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +  + ++Y A SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GY
Sbjct: 1   MGEQQKKNNYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A+ +TV L  DG   V DNGRGIP + H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 60  ANEVTVKLLEDGGVEVEDNGRGIPVEKHPS-GPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IKR+G ++   F N +    L     A   TGT   F P  +
Sbjct: 119 HGVGISVVNALSTRVETEIKRDGYLWRQVFNNAVP-EELEQVKKA-RGTGTRQRFWPDPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------- 215
           IF   +FN+ T+  RL+E++FLN  + I+LID+R                          
Sbjct: 177 IFETVEFNFKTVAKRLQEMAFLNKGLTINLIDERPQVEAEDELADAAEDADAPKTSEEKA 236

Query: 216 ------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
                  EP + T  Y  G++ +V +++  K  +  + I  +   ++  +++A++WN GY
Sbjct: 237 QEEKAKKEPTKKTFHYPEGLKDYVDFINSKKTAVHPTIISFEAKGEDHEVEVALQWNSGY 296

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            ++V  F N I   +GGTH  G R+ALT  +  Y  +    K    +  GDD REG  +V
Sbjct: 297 AQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAREHKLLKDKDPNFSGDDVREGLAAV 356

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+++ DP+F  QTK KL ++E++  V+  VN+ LS WL+ +P EAK+IV K + ++  R
Sbjct: 357 ISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLSDWLDANPAEAKVIVNKAVASAHAR 416

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AAR+ARDL RRK   D+  LPGKLADC  +D K SEL++VEGDSAGGSAK GR    QA
Sbjct: 417 MAARKARDLVRRKSASDLGGLPGKLADCRSKDAKLSELYIVEGDSAGGSAKSGRDSMFQA 476

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDI+KLRYHKI++M DADVD
Sbjct: 477 ILPLRGKILNVEKARMDKILKNAEVQAIITALGTGI-HDEFDISKLRYHKIVLMADADVD 535

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G HI TLLLT  FR M  L+  G++Y+  PPLY +  GK        +   D L+ + L+
Sbjct: 536 GQHIATLLLTLLFRFMRPLVEEGYVYLANPPLYKLKWGKGEPGFAFSDRERDKLLEEGLA 595

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              ++  D    I +      ++     +  +   Y    +  +E A  +   
Sbjct: 596 AGRKINKDDG--IQRYKGLGEMNAKELWETTMDPEYRVLRRVTLEDAAGADEL 646



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 101/245 (41%), Gaps = 24/245 (9%)

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
           +  LSE   +  DS G  +K+   +     L +   I +         ++ A +  +   
Sbjct: 448 DAKLSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKILNVEKARMDKILKNAEVQAIITA 507

Query: 625 ESDQEINVSLASKLANR-LNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683
                 +    SKL    +  +A+      H +     +L + +   V+E +V       
Sbjct: 508 LGTGIHDEFDISKLRYHKIVLMADADVDGQHIATLLLTLLFRFMRPLVEEGYV------- 560

Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRY 739
                                 +               LL+   + GRK I+    +QRY
Sbjct: 561 ---YLANPPLYKLKWGKGEPGFAFSDRERDK-------LLEEGLAAGRK-INKDDGIQRY 609

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA +LWETT++P+ R L RV + DA+ AD+LFS LMGD+V  RR FI  N+   
Sbjct: 610 KGLGEMNAKELWETTMDPEYRVLRRVTLEDAAGADELFSILMGDDVVARRSFITRNARDV 669

Query: 800 A-LDI 803
             LD+
Sbjct: 670 RFLDV 674


>gi|282899715|ref|ZP_06307679.1| DNA gyrase, B subunit [Cylindrospermopsis raciborskii CS-505]
 gi|281195594|gb|EFA70527.1| DNA gyrase, B subunit [Cylindrospermopsis raciborskii CS-505]
          Length = 798

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 288/812 (35%), Positives = 425/812 (52%), Gaps = 30/812 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY   + V
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCTHVDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            LN DGSCTV+D+GRGIPTD+H + G SA E ++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  ELNADGSCTVTDDGRGIPTDIHPKTGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  + + + RE  ++   +  G     L V     + TGT V F P   IF+   
Sbjct: 121 VVNALSEVVDITVWREHKVHTQRYERGAPTTELQVEPDQHSRTGTSVKFKPDVQIFTTGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+Y TL  RLREL++LN+ V+IS  D R     +  P+  T  YKGGI+ +VSY++R K
Sbjct: 181 EFDYITLAGRLRELAYLNAGVKISFTDHRLELLKTDTPKVETYEYKGGIKEYVSYINRDK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + L +  I +QG R+N+ +++A++W  D Y +NVL F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QALHEEIIYVQGERNNVQVEVALQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKTVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S   K    K+++ ++ G+  REG T+V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 LNSIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +LE HP  A  I+ K + A    +AAR AR+L RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLTEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP +SE+F+VEGDSAGG               L    L  E+A   +        T+  
Sbjct: 421 RDPAESEIFIVEGDSAGGCFVGNTLVSLTDGRNLTFTDLIAEQAAGKQNY----CYTIQE 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII-- 537
               GI +           +++ +T   +D   +        F     ++ +G       
Sbjct: 477 NGEVGIEKILHVRTTKTNAEVVRVT---LDNDQVLICTPDHLF-----MLRDGNYQAAGL 528

Query: 538 -KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
             P    +           + ++  Y       E +    D   +   +     +   + 
Sbjct: 529 LTPQDSLMPYYDQSIPAVMQSAVTTYNHRVVSVESLAEKFDVYDLEVPHTHNFALTAGVF 588

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-KSWHG 655
           +    K       +  +   +   + N E   +  +   +++ + +  +    + + +  
Sbjct: 589 VHNSAKQGRDRRTQAIL--PLRGKILNIEKTDDAKIYKNNEVQSLITALGLGVKGEEFDA 646

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
           S      +V      V    +      F +  +   I    I      +  +    +   
Sbjct: 647 SQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIACPPLYKVERGKNYHY 706

Query: 716 ITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                 L   I ++ G    ++QR+KGLGEM   QLW TT+NP+TR+L +V+I DA++AD
Sbjct: 707 CYSDRELQQHISTLPGNANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKQVEIEDAAEAD 766

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
            +F+ LMGD V PRREFI+          LDI
Sbjct: 767 RIFTILMGDRVAPRREFIETYGSKLNLTDLDI 798


>gi|226362903|ref|YP_002780683.1| DNA gyrase subunit B [Rhodococcus opacus B4]
 gi|226241390|dbj|BAH51738.1| DNA gyrase subunit B [Rhodococcus opacus B4]
          Length = 680

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 265/609 (43%), Positives = 371/609 (60%), Gaps = 37/609 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            +  +  Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA 
Sbjct: 8   KSTSSKDYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYAS 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + +TL  DG   V D+GRGIP  +H   G+   EV++T+LHAGGKF+  SY VSGGLHG
Sbjct: 67  KVEITLLEDGGVQVVDDGRGIPVGMHAS-GVPTVEVVLTQLHAGGKFDSDSYAVSGGLHG 125

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TGT V F    +IF
Sbjct: 126 VGISVVNALSTRLDVDIKRDGFRWNQTYTDSKP-GEL-VKGEATKETGTTVRFWADPNIF 183

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
               ++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 184 ETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTAEDESAEA 243

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                 + +     Y GG+E +V +++R K+P+  S +          +++AM+WN GY 
Sbjct: 244 GAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHELEIAMQWNSGYS 303

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  F N I   +GGTH  G RSALT  +  Y       K+    + GDD REG  +++
Sbjct: 304 ESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIREGLAAII 363

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK IV K + ++  R 
Sbjct: 364 SVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAVSSAQARV 423

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAI
Sbjct: 424 AARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMYQAI 483

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++M DADVDG
Sbjct: 484 LPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDG 542

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            HI TLLLT  FR M  L+ +G +Y+ +PPLY +   ++       +   D L+   L  
Sbjct: 543 QHIATLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRADPEFAYSDRERDALVKAGLES 602

Query: 571 EIELFCDSK 579
             ++  D  
Sbjct: 603 GKKINKDDG 611



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +L+      G+K I+    +QRYKGLGEMNA +LWETT++P  R L  V + DA+ AD+L
Sbjct: 594 ALVKAGLESGKK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDDAAAADEL 652

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMG++VE RR FI  N+     LD+
Sbjct: 653 FSVLMGEDVEARRSFITRNAKDVRFLDV 680


>gi|148906969|gb|ABR16629.1| unknown [Picea sitchensis]
          Length = 737

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 277/650 (42%), Positives = 389/650 (59%), Gaps = 20/650 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD+    SYDA  IQ+L+GLD V+KRP MYIG T G  GLHH++YEVLDNAIDE+  G+A
Sbjct: 88  SDSPAAKSYDAGQIQVLEGLDPVRKRPGMYIGST-GPRGLHHLVYEVLDNAIDEAQAGFA 146

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGG 119
             I V + +DGS ++ D+GRGIPTDLH     SA E ++T LHAGGKF  +S  Y VSGG
Sbjct: 147 TNIDVIIFLDGSVSIMDDGRGIPTDLHPVTHKSALETVLTVLHAGGKFGGESSGYSVSGG 206

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEVTFL 176
           LHGVG+SVVNALS  L++ + R+G  +  +F  G     L    + G      GT V F 
Sbjct: 207 LHGVGLSVVNALSEKLEVTVWRDGKEWNQTFACGKPVTELTSNEILGEFKFRQGTRVRFW 266

Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFV 233
           P  ++F+    F+Y+T+  R REL+FLN  V+I+L  +             Y GG+  +V
Sbjct: 267 PDKEVFTTTTEFDYNTIVGRARELAFLNPQVKITLKQENKDAENVTYNEYHYAGGLVEYV 326

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGL 292
            +L+R K P++  PI     +D + +++A++W  D Y + +L + N+I   DGG+H+ G+
Sbjct: 327 CWLNRDKTPIL-KPISFTREKDGVIVNVALQWCSDAYTDTLLGYANSIRTSDGGSHMDGV 385

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +SALTR   +   KS   K+   ++ G+  REG T ++S+K+P P F  QTK +L + EV
Sbjct: 386 KSALTRTFNNLGRKSKLIKEKDENLSGEHVREGLTGIVSVKVPKPEFEGQTKTRLGNPEV 445

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R +V+  V + L+ +LE +P   + I+ K L+A     AA++AR+L RRK VL  ++LPG
Sbjct: 446 RRIVDQAVQEYLTEYLECNPGVLESILSKALNAYKAAMAAKKARELVRRKSVLRPSALPG 505

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS  DP+++E+F+VEG+SAGGSAKQGR R  QAILPLRGKILNVER     M  ++
Sbjct: 506 KLADCSASDPREAEIFIVEGESAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 565

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI  LI  LG G+  + F  + LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L   G
Sbjct: 566 EIQNLILGLGLGLKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEEG 625

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFI 591
           ++Y+  PPLY + RG+   Y  DE+ L+        +           G +    L    
Sbjct: 626 YIYVGVPPLYKVERGRQAHYCFDEDELKKLQKTFPSNASYNIQRFKGLGEMMPLQLWET- 684

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVF---NCESDQEINVSLASKL 638
                +D   +       +   E  ++  +      E  +E+  + ASK+
Sbjct: 685 ----TLDPATRKLKQLTVEDAAEANMVFSLLMGNRVEPRKELIENSASKI 730



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 121/344 (35%), Gaps = 40/344 (11%)

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYV 553
           R  K+I   D ++ G H+R  L      ++P     G        P +  I      +Y+
Sbjct: 398 RKSKLIKEKDENLSGEHVREGLTGIVSVKVPKPEFEGQTKTRLGNPEVRRIVDQAVQEYL 457

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL------KIDKLIKDFYPN 607
            +       ++   LS+ +  +  +       +L              K+          
Sbjct: 458 TEYLECNPGVLESILSKALNAYKAAMAAKKARELVRRKSVLRPSALPGKLADCSASDPRE 517

Query: 608 HDKTFIE----------------QAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            +   +E                QA++       + +  + +   K     N I      
Sbjct: 518 AEIFIVEGESAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLILGLGLG 577

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSL 707
                     +   +I   +     ++G+ I +    F  +Y+R                
Sbjct: 578 LKGEDFKKDALRYHKII--ILTDADVDGAHIRTLLLTFFFRYQRALFEEGYIYVGVPPLY 635

Query: 708 ICNGDKIKITGPCSLLDTIFSI-----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
                +          D +  +          ++QR+KGLGEM   QLWETTL+P TR L
Sbjct: 636 KVERGRQAHYCFDE--DELKKLQKTFPSNASYNIQRFKGLGEMMPLQLWETTLDPATRKL 693

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
            ++ + DA++A+ +FS LMG+ VEPR+E I+ ++   +   LDI
Sbjct: 694 KQLTVEDAAEANMVFSLLMGNRVEPRKELIENSASKISIEKLDI 737


>gi|323694887|ref|ZP_08109037.1| DNA gyrase subunit B [Clostridium symbiosum WAL-14673]
 gi|323500977|gb|EGB16889.1| DNA gyrase subunit B [Clostridium symbiosum WAL-14673]
          Length = 637

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 289/584 (49%), Positives = 401/584 (68%), Gaps = 5/584 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+ D I V 
Sbjct: 3   SEYSADQIQILEGLEAVRKRPGMYIGSTS-MRGLHHLVYEIVDNAVDEALAGFCDTIEVQ 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N D S TV D+GRGIP D+ K+ GI A EV+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 62  INEDNSITVEDDGRGIPVDIQKKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQD 186
           VNALS WL++ I +EG +Y+  +  G +  PL V G    D  GT+VTFLP  DIF    
Sbjct: 122 VNALSEWLEVEIYKEGKVYKQRYERGKVMCPLRVEGECPPDKHGTKVTFLPDKDIFEETV 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YDTL+ RLRE +FL  +++I L D R  +  ++   Y+GGI+ FV+YL++  + L   
Sbjct: 182 YDYDTLKIRLRETAFLTKNLRIVLRDDRDNKKEKV-FHYEGGIKEFVTYLNKSNEKLYAP 240

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G+++ + +++A++ ND Y EN+  F NNI   +GGTHL+G ++ALT+    Y  K
Sbjct: 241 VIYCEGTKEQVYVEVAVQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARK 300

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K ++ ++ G+D REG T+++S+K+ +P+F  QTK+KL +SE R+ V++ V++ L+ 
Sbjct: 301 NKLLKDNEPALSGEDIREGITAIISVKIEEPQFEGQTKQKLGNSEARTAVDAVVSEQLTY 360

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LE++P  AKII +K + A   RDAAR+AR++TRRK VLD  +LPGKLADCS+++ +  E
Sbjct: 361 FLEQNPSVAKIICEKSILAKRARDAARKAREMTRRKSVLDGMALPGKLADCSDKNAENCE 420

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAK+ R++ NQAILPLRGKILNVE+AR D++  + EI  +ITA GTGI 
Sbjct: 421 IYIVEGDSAGGSAKEARNKSNQAILPLRGKILNVEKARLDRIYGNAEIRAMITAFGTGIH 480

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI KLRY+KIIIMTDADVDGAHI TLLLTF +R MP LI  G +Y+ +PPLY + +
Sbjct: 481 ED-FDIEKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIRQGHVYLAQPPLYKVEK 539

Query: 547 GKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
            K + Y   +E L   L+                G +    L  
Sbjct: 540 NKRVWYAYSDEELNSILMEIGRDTNNKIQRYKGLGEMDAEQLWE 583



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 5/106 (4%)

Query: 703 TILSLICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTR 760
             L  +    ++        L   +  IGR   + +QRYKGLGEM+A QLWETT++P+ R
Sbjct: 532 PPLYKVEKNKRVWYAYSDEELNSILMEIGRDTNNKIQRYKGLGEMDAEQLWETTMDPERR 591

Query: 761 SLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LLRV I +  AS+ D  F+ LMGD+VEPRREFI+ N+     LDI
Sbjct: 592 ILLRVMIDNETASEVDLTFATLMGDQVEPRREFIEANAKYVQNLDI 637


>gi|242243251|ref|ZP_04797696.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144]
 gi|242233200|gb|EES35512.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144]
 gi|319399910|gb|EFV88156.1| DNA gyrase, B subunit [Staphylococcus epidermidis FRI909]
          Length = 643

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 302/639 (47%), Positives = 415/639 (64%), Gaps = 5/639 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  SHIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R G IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLKEIGDT-DKTGTAIRFKADKEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E RE +  Y+GGI+++V  L+ +K
Sbjct: 184 FTETTVYNYETLQKRIRELAFLNKGIQITLKDEREEEVREDSYHYEGGIKSYVDLLNENK 243

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR +
Sbjct: 244 EPLHDEPIYIHQSKDDIEVEIALQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVL 303

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY  +S   K+DK  + G+D REG T+V+SIK  DP+F  QTK KL +SEVR VV+   
Sbjct: 304 NSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLF 363

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++    +L E+P   +IIV+K + AS  R AA++AR++TRRK  LD++SLPGKLADCS +
Sbjct: 364 SEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSK 423

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P++SE+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +ITA
Sbjct: 424 NPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITA 483

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +PP
Sbjct: 484 FGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP 542

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY +T+GK   YV ++  L+      + S           G ++ + L     +      
Sbjct: 543 LYKLTQGKQKYYVFNDRELDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSM 602

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L        D     + ++  V         + ++ + L
Sbjct: 603 LQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANL 641



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 18/180 (10%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690
             RL+ I   +E          G     DI   R  + V      ++G+ I +    +  
Sbjct: 465 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 524

Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSI---GRKGISMQRYKGL 742
           R     IE  Y+ I       L     K  +      LD +        K  S+ RYKGL
Sbjct: 525 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKQELNPSPK-WSIARYKGL 582

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           GEMNA QLWETT+NP+ RS+L+V++ DA  AD  F  LMGD VE RR+FI++N++ + LD
Sbjct: 583 GEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANLD 642


>gi|242052563|ref|XP_002455427.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor]
 gi|241927402|gb|EES00547.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor]
          Length = 729

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 269/597 (45%), Positives = 370/597 (61%), Gaps = 10/597 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +    + Y A ++Q+L+ LD V+ RP MYIG T G  GLHH++YE+LDNA+DE   G+
Sbjct: 81  MHEKRVAAEYTAANVQVLEALDGVRTRPGMYIGST-GPRGLHHLVYEILDNAVDEGQAGH 139

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSG 118
           A  I V L+ D S +V+DNGRGIPTD+H +   S  E ++T +HAGGKF      Y VSG
Sbjct: 140 ASKIDVVLHDDNSVSVTDNGRGIPTDMHPQTKKSCVETVLTLMHAGGKFGGSKSGYSVSG 199

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTF 175
           GLHGVG+SVVNALS  L++ + R+GN Y  S+  G    PL      G      GT + F
Sbjct: 200 GLHGVGLSVVNALSEALEVTVWRDGNKYRQSYSRGKPTTPLSSITLTGETSPRQGTSIRF 259

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  DIF+   DF+++T+  R+REL+FLN  + I+L  +     +     Y GG+  +V 
Sbjct: 260 WPDKDIFTTTIDFDFNTISSRIRELAFLNPELTITLTKEEGHTVQHNEYCYAGGLVEYVK 319

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+  KKPL   PI  +   D I++D++++W+ D Y + VL + N+I   DGGTH+ GL+
Sbjct: 320 WLNTDKKPLH-DPIAFRKELDGITVDVSLQWSSDSYSDTVLGYANSIRTIDGGTHIDGLK 378

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR I ++ +KS   K    ++ G+  REG T V+S+K+P P F  QTK +L + EVR
Sbjct: 379 ASLTRTINNFAKKSKTIKDKDITLSGEHVREGMTCVISVKVPSPEFEGQTKTRLGNPEVR 438

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VE  V + L+ +LE HP     I+ K L+A     AA+RAR+L R K VL  +S+PGK
Sbjct: 439 RIVEQAVQENLTEYLELHPDVLDSILSKSLNALKASLAAKRARELVRSKSVLKSSSIPGK 498

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC+  +P++SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  ++E
Sbjct: 499 LADCASTNPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEE 558

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  LI ALG G+  + F    LRYHKI+I+TDADVDGAHIRTLLLTFFFR   +L   G 
Sbjct: 559 IQNLILALGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQRALFDEGC 618

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +Y+  PPLY + RGK   Y  D+  L++ +     +           G +    L  
Sbjct: 619 IYVGVPPLYKVERGKQAHYCYDDADLKEIVNTFPPNASYHIQRFKGLGEMMPVQLWE 675



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           + N E   E  +    ++ N +  +    K E     ++    I++      V    +  
Sbjct: 542 ILNIERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYHKIVIL-TDADVDGAHIRT 600

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS---IGRKGIS 735
               F F  +        I      +  +              L + + +          
Sbjct: 601 LLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKEIVNTFPPNA--SYH 658

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEM   QLWETT++P+ R L ++K+ DA++A+ +FS LMG  VE R++ IQE 
Sbjct: 659 IQRFKGLGEMMPVQLWETTMDPERRLLKQLKVEDAAEANVVFSSLMGSRVEYRKQLIQEA 718

Query: 796 S 796
           +
Sbjct: 719 A 719


>gi|27466922|ref|NP_763559.1| DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|57865927|ref|YP_190090.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A]
 gi|251811368|ref|ZP_04825841.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874725|ref|ZP_06283604.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135]
 gi|293367576|ref|ZP_06614229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|38604835|sp|Q8CQK4|GYRB_STAES RecName: Full=DNA gyrase subunit B
 gi|81819302|sp|Q5HK03|GYRB_STAEQ RecName: Full=DNA gyrase subunit B
 gi|27314464|gb|AAO03601.1|AE016744_4 DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|57636585|gb|AAW53373.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A]
 gi|251805117|gb|EES57774.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296441|gb|EFA88956.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135]
 gi|291318289|gb|EFE58682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724157|gb|EGG60675.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU144]
 gi|329735731|gb|EGG72012.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU028]
 gi|329736056|gb|EGG72329.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU045]
          Length = 643

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 302/639 (47%), Positives = 415/639 (64%), Gaps = 5/639 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  SHIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R G IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLKEIGDT-DKTGTAIRFKADKEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E RE +  Y+GGI+++V  L+ +K
Sbjct: 184 FTETTVYNYETLQKRIRELAFLNKGIQITLKDEREEEVREDSYHYEGGIKSYVDLLNENK 243

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR +
Sbjct: 244 EPLHDEPIYIHQSKDDIEVEIALQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVL 303

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY  +S   K+DK  + G+D REG T+V+SIK  DP+F  QTK KL +SEVR VV+   
Sbjct: 304 NSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLF 363

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++    +L E+P   +IIV+K + AS  R AA++AR++TRRK  LD++SLPGKLADCS +
Sbjct: 364 SEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSK 423

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P++SE+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +ITA
Sbjct: 424 NPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITA 483

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +PP
Sbjct: 484 FGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP 542

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY +T+GK   YV ++  L+      + S           G ++ + L     +      
Sbjct: 543 LYKLTQGKQKYYVFNDRELDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSM 602

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L        D     + ++  V         + ++ + L
Sbjct: 603 LQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANL 641



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 18/180 (10%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690
             RL+ I   +E          G     DI   R  + V      ++G+ I +    +  
Sbjct: 465 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 524

Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSI---GRKGISMQRYKGL 742
           R     IE  Y+ I       L     K  +      LD +        K  S+ RYKGL
Sbjct: 525 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKQELNPSPK-WSIARYKGL 582

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           GEMNA QLWETT+NP+ RS+L+V++ DA  AD  F  LMGD VE RR+FI++N++ + LD
Sbjct: 583 GEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANLD 642


>gi|259047900|ref|ZP_05738301.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175]
 gi|259035577|gb|EEW36832.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175]
          Length = 645

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 279/594 (46%), Positives = 403/594 (67%), Gaps = 8/594 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++  +      YDA  IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L
Sbjct: 1   MTEENKAELAAQYDASQIQVLEGLEAVRKRPGMYIGSTSSA-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I + +  +    V+D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFATHIEIEITKENHIRVTDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L +++ ++GNIYE S+  G +   L + G   +  GT V F+P
Sbjct: 120 GGLHGVGASVVNALSTDLTVQVFKDGNIYEQSYKRGAVLEDLKIIG-TTDKHGTSVYFVP 178

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F +D L +R+REL+FLN  +++++ D R  EP   +  Y+GGI+++V +L
Sbjct: 179 DPEIFQETTVFEFDKLANRVRELAFLNKGLKLTITDFRPEEPVRKSFCYEGGIKSYVEHL 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           ++ K+ L + PI ++G +D I +++AM++  GYH N+L FTNNI   +GGTH SG+++AL
Sbjct: 239 NKSKQVLFEEPIYVEGEQDGIQVEVAMQYTSGYHTNLLSFTNNIHTYEGGTHESGMKTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  +    K+++  + G+D REG T+V+SIK PDP+F  QTK KL +SE R++ 
Sbjct: 299 TRVINDYARRQKLMKENEEKLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEARTIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +   +     +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 DRLFSTHFDKFLMENPQVARKIVEKGILASKARLAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  DP  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNDPTISELFIVEGDSAGGSAKQGRSRHFQAILPIRGKILNVEKATLDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G D FD++K RY K++IMTDADVDG+HIRTLL+T F+R M   +  G++YI
Sbjct: 479 LFTAMGTGFGGD-FDLSKARYQKLVIMTDADVDGSHIRTLLITLFYRYMRPAVEAGYIYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            +PPLY + +GK+  Y+++++ LE  L       +         G +    L  
Sbjct: 538 AQPPLYKLKQGKNEYYIQNDKELEAKLKELPAHPKPQLSRYKGLGEMDAEQLWE 591



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 6/201 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E      +    ++ +    +       +  S      LV  
Sbjct: 447 RHFQAIL--PIRGKILNVEKATLDKILANEEIRSLFTAMGTGFGGDFDLSKARYQKLVIM 504

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +        +      + +  I      +  L    ++  I     L   +
Sbjct: 505 TDADVDGSHIRTLLITLFYRYMRPAVEAGYIYIAQPPLYKLKQGKNEYYIQNDKELEAKL 564

Query: 727 FSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
             +       + RYKGLGEM+A QLWETT+NP+ RS+L+V + DA++AD +   LMGD V
Sbjct: 565 KELPAHPKPQLSRYKGLGEMDAEQLWETTMNPENRSMLQVSVEDAAEADQILDILMGDRV 624

Query: 786 EPRREFIQENSLPSA---LDI 803
           EPRREFI+ N+       LDI
Sbjct: 625 EPRREFIESNAKYINMEDLDI 645


>gi|241895511|ref|ZP_04782807.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
 gi|241871257|gb|EER75008.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
          Length = 648

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 286/646 (44%), Positives = 404/646 (62%), Gaps = 17/646 (2%)

Query: 1   MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M++        Q   YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN ID
Sbjct: 1   MAEEDVSQMHTQADDYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIVDNGID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+A+ ITVT+  D S TV DNGRGIP D+  + G  A E + T LHAGGKF    Y
Sbjct: 60  EALAGFANHITVTIEKDNSITVIDNGRGIPVDIQVKTGKPALETVFTILHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTE 172
           KVSGGLHGVG SVVNALS+ L + + R+G  + M F  G +   +            GT 
Sbjct: 120 KVSGGLHGVGASVVNALSTNLDVLVVRDGKGFAMDFERGHVKTEMHEIAIDDKPVSRGTI 179

Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F P  DIF     F+Y TL +R+REL+FLN  ++IS+ D R  EP   +  Y+GGI+ 
Sbjct: 180 VHFAPDPDIFRETTVFDYKTLMNRVRELAFLNKGLRISITDMRPEEPVVESFHYEGGIKE 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           +V +L+ +K  +   PI ++G  ++I +++++++ D +H N+L FTNNI   +GGTH +G
Sbjct: 240 YVDFLNVNKDVIFNEPIYVEGMENDIDVEVSLQYTDDFHSNLLSFTNNIHTYEGGTHETG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +SALTR I  Y  K+   K +   + GDD REG T+++S+K PDP+F  QTK KL +S+
Sbjct: 300 FKSALTRVINDYARKNKILKDNDDPLSGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSD 359

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            R+ V+   ++  + ++ E+P  AK IV+K + A   R AA+RAR+ TR+K  L+IA+LP
Sbjct: 360 ARTAVDRMFSETFARFMMENPTTAKQIVEKGILAGKARMAAKRAREATRKKSGLEIANLP 419

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLAD + +DP+ SELF+VEGDSAGGSAKQGR R  QAILP+RGKILNVE+A  +K+L +
Sbjct: 420 GKLADNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASMEKILGN 479

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            EI +L TA+GTG G   FD+ K +YHK+IIMTDADVDGAHIRTLLLT  +R M  L+  
Sbjct: 480 DEIRSLFTAMGTGFG-TDFDVTKAKYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLEA 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590
           G++YI +PPLY + +GK ++Y+  +  LE  L     S + I       G +  + L   
Sbjct: 539 GYVYIAQPPLYQVRQGKFIKYLDADSELEALLPTLPASPKPIIQRYKGLGEMDASQLWET 598

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                 +D  ++          IE  +I  +   +  +     +  
Sbjct: 599 -----TMDPSVRRLLRVEMDDAIEADMIFSMLMGDKVEPRRKFIEE 639



 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 44/68 (64%), Positives = 58/68 (85%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ASQLWETT++P  R LLRV++ DA +AD +FS LMGD+VEPRR+FI+EN
Sbjct: 581 IQRYKGLGEMDASQLWETTMDPSVRRLLRVEMDDAIEADMIFSMLMGDKVEPRRKFIEEN 640

Query: 796 SLPSALDI 803
           +  + LD+
Sbjct: 641 AQYAELDV 648


>gi|269118649|ref|YP_003306826.1| DNA gyrase subunit beta [Sebaldella termitidis ATCC 33386]
 gi|268612527|gb|ACZ06895.1| DNA gyrase, B subunit [Sebaldella termitidis ATCC 33386]
          Length = 642

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 265/597 (44%), Positives = 370/597 (61%), Gaps = 15/597 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSDN     Y+A+SI +L+GL+AV+KRP MYIG T    GLHH+++EV+DN++DE+L G+
Sbjct: 1   MSDN-----YNAESITVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEVVDNSVDEALAGF 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V +  D    V DNGRGIP ++H++ G S  EV++T LHAGGKFN  +YKVSGGL
Sbjct: 55  CDTIKVRVLEDNIIEVIDNGRGIPVEMHEKMGKSTLEVVLTVLHAGGKFNNDNYKVSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSS 179
           HGVGVSVVNALS  L+  I ++G ++   +  G+ +  +   G A  D  GT + F    
Sbjct: 115 HGVGVSVVNALSETLEAIITKDGKVWYQKYHRGVPEEDIKQIGEAPEDAHGTTIRFKADG 174

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF   +++Y+ L  RL+E+++LN  ++I L D+R  +  +    +  G           
Sbjct: 175 EIFETLEYDYEILLTRLKEMAYLNKGLRIILSDERQKDKPKTDDLHFEGGIRDFLSEIAD 234

Query: 240 KKPLMQSPIRIQGS-----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            + ++   I +  S     +  + +++AM +     E V  F NNI   +GGTH+SG R+
Sbjct: 235 DERVLDDIIYMDDSVELDNKKRVEVEIAMTYTISQREMVYSFVNNINTHEGGTHVSGYRT 294

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR +    ++    K    S  G D REG  ++LSIK+P+P+F  QTK KL +SE+  
Sbjct: 295 ALTRVLNEISKQMGLVKDKDGSFQGSDVREGLVAILSIKIPEPQFEGQTKTKLGNSEITG 354

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           VV   V   L  +LE+HP EA  I++K+L +   R+AA++AR+L  RK  L++ SLPGKL
Sbjct: 355 VVSGIVGSSLKMYLEDHPKEASNIIEKILMSKKAREAAKKARELVLRKSSLEVGSLPGKL 414

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +D  + E+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   + L + EI
Sbjct: 415 ADCSSKDASECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGIGRALENAEI 474

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             +ITA G G G D  D+ KLRYHKIIIMTDADVDGAHIRTL+LTFF+R +  LI+ G +
Sbjct: 475 RAMITAFGAGFG-DEMDLEKLRYHKIIIMTDADVDGAHIRTLMLTFFYRHLRELINEGHI 533

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI--ELFCDSKGVISKNDLRN 589
           YI +PPLY +  GK +QYV  +E L+          +          G ++   L  
Sbjct: 534 YIAQPPLYKVQAGKQIQYVYSDEQLQSVTKVMDQENKRYGIQRYKGLGEMNPEQLWE 590



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 5/128 (3%)

Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIK-ITGPCSL--LDTIFSIGRKGISM 736
            + +F  ++ R   N          L  +  G +I+ +     L  +  +     K   +
Sbjct: 515 LMLTFFYRHLRELINEGHIYIAQPPLYKVQAGKQIQYVYSDEQLQSVTKVMDQENKRYGI 574

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMN  QLWETT++P+ R+LL+V + DA+ AD +F+ LMGD+VEPRR+FI+E++
Sbjct: 575 QRYKGLGEMNPEQLWETTMDPEVRTLLKVSLEDATYADKMFNVLMGDKVEPRRQFIEEHA 634

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 635 QYVRNLDI 642


>gi|145577991|gb|ABP82714.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           mycoides]
          Length = 631

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 280/585 (47%), Positives = 400/585 (68%), Gaps = 7/585 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY D I V
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++  D S  V+D+GRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG S
Sbjct: 60  SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNAL + L++ + R+G I+   +  G+    L V G   + TGT   F P S+IF+   
Sbjct: 120 VVNALPTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  
Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++   
Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  S
Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I
Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  +I  G++Y  +PPL+ + 
Sbjct: 478 GGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-AQPPLFKVQ 535

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +GK +QY  + + LE  L       +         G ++   L  
Sbjct: 536 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 580



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 77/365 (21%), Positives = 133/365 (36%), Gaps = 30/365 (8%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525
             ++            G       +      K  I+ DAD +  G  +R  L      + 
Sbjct: 267 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 326

Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571
           P+    G           +     +      +++ +  ++   +I+        +  +++
Sbjct: 327 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 386

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                  K  +  + L   + D    D  I + Y     +    A      + ++   + 
Sbjct: 387 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 446

Query: 632 VSLASKLANRLNFIAEKSEKSW-----------HGSINNSDILVKRIARGVQEQFVLEGS 680
             + +    RL+ I    E                +I  +      I            +
Sbjct: 447 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRT 506

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
            + +F  +Y R             L  +  G KI+       L+ I +    +    +QR
Sbjct: 507 LLLTFFYRYMRQIIECGYIYAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGIQR 566

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+  
Sbjct: 567 YKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 626

Query: 799 S-ALD 802
              LD
Sbjct: 627 VKNLD 631


>gi|224477952|ref|YP_002635558.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222422559|emb|CAL29373.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 640

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 294/641 (45%), Positives = 410/641 (63%), Gaps = 6/641 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSDVNNTENYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  ADKIEVIIEKDNWIRVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++ + R   IY  ++  GI    L V G   +  GTE+ F    +
Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNNKIYNQAYKRGIPQYDLKVIGETEH-NGTEIRFKADPE 178

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238
           IF     + Y+ LQ R+REL+FLN  +QISL D+R  +        Y+GGI+++V  L+ 
Sbjct: 179 IFTETTTYQYEVLQKRIRELAFLNKGIQISLRDERDEDNIREDSYHYEGGIKSYVELLNE 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+PL   P+ +   +D++ +++A+++N G+  N+L + NNI   +GGTH  G + ALTR
Sbjct: 239 NKEPLFDEPVYVHDRKDDVEVEIAIQYNSGFTTNLLSYANNIHTYEGGTHEDGFKRALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY  KS   K+DK  + G+D REG T+++SIK  DP+F  QTK KL +SEVR +V+ 
Sbjct: 299 VLNSYGTKSGLIKEDKERLSGEDTREGMTAIVSIKHEDPQFEGQTKTKLGNSEVRQIVDR 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + +  +L EHP  A+II++K L AS  R AA++AR++TRRK  L+++SLPGKLADCS
Sbjct: 359 LSAEDMERFLYEHPQVARIIIEKGLMASRARIAAKKAREVTRRKSALEVSSLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++P++SE+FLVEGDSAGGS K GR    QAILPLRGKILNVE++R D++L++ EI ++I
Sbjct: 419 SKNPEESEIFLVEGDSAGGSTKLGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRSMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKI 597
           PPL+ +T+GK   YV +E  LE        +           G +  + L     +    
Sbjct: 538 PPLFKLTQGKQKYYVFNERELEKLKSELKPTPKWSISRYKGLGEMDADQLWETTMNPEHR 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
             L        +     + ++  V         + ++ + L
Sbjct: 598 SMLQVTLEDAIEADTTFEMLMGDVVENRRQFIEDNAVYANL 638



 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      L+ + S  
Sbjct: 507 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLFKLTQGKQKYYVFNERE-LEKLKSEL 565

Query: 731 RK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788
           +     S+ RYKGLGEM+A QLWETT+NP+ RS+L+V + DA +AD  F  LMGD VE R
Sbjct: 566 KPTPKWSISRYKGLGEMDADQLWETTMNPEHRSMLQVTLEDAIEADTTFEMLMGDVVENR 625

Query: 789 REFIQENSLPSALD 802
           R+FI++N++ + LD
Sbjct: 626 RQFIEDNAVYANLD 639


>gi|24379696|ref|NP_721651.1| DNA gyrase subunit B [Streptococcus mutans UA159]
 gi|290580305|ref|YP_003484697.1| putative DNA gyrase subunit B [Streptococcus mutans NN2025]
 gi|24377654|gb|AAN58957.1|AE014963_1 putative DNA gyrase subunit B [Streptococcus mutans UA159]
 gi|254997204|dbj|BAH87805.1| putative DNA gyrase subunit B [Streptococcus mutans NN2025]
          Length = 650

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 284/628 (45%), Positives = 414/628 (65%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEENKNLDQLAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASHIQVFIEEDNSITVIDDGRGIPVDIQQKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +R+ + G I+   +  G++   L V G   + TGT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYHRGVVAEDLKVIGDT-DITGTIVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++D L  R++EL+FLN  ++IS+ DKRS + R+    Y+GGI ++V 
Sbjct: 179 TPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISITDKRSGQERKEEFHYEGGIVSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +++ +K+ +   PI   GS D IS+++AM++  G+HEN++ F NNI   +GGTH  G R+
Sbjct: 239 FINENKEVIFDKPIYTDGSLDGISVEVAMQYTTGFHENIMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y +K+   K+++ ++ GDD REG T+++S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLNGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     +D L+ +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSDALNRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  DP ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDPIQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G + FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAE-FDVSKSRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YGI  G  ++      + ++  + ++L  E      SK  + +      +DD 
Sbjct: 538 YIAQPPIYGIKVGSDIKEYIQPGNDQEEKLQEAL--EKYSQGRSKPTVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMNPDNRLMARVSLDDAAEADKI 623



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G+  +       L+  +S GR   ++QRYKGLGEM+  QLWETT+NPD
Sbjct: 548 KVGSDIKEYIQPGNDQE-EKLQEALEK-YSQGRSKPTVQRYKGLGEMDDHQLWETTMNPD 605

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRR FI+EN++ S LD+
Sbjct: 606 NRLMARVSLDDAAEADKIFDMLMGDRVEPRRGFIEENAVYSTLDV 650


>gi|282881781|ref|ZP_06290439.1| DNA gyrase, B subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298391|gb|EFA90829.1| DNA gyrase, B subunit [Peptoniphilus lacrimalis 315-B]
          Length = 639

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 283/592 (47%), Positives = 379/592 (64%), Gaps = 8/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YDA  IQ+LKGL+ V+KRP MYIG T GE GLHH++YEV+DN+IDE+L G 
Sbjct: 1   MAEK--KRHYDAGDIQVLKGLEPVRKRPGMYIGST-GEKGLHHLVYEVVDNSIDEALAGI 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I + +  +GSC V DNG GIP ++H + G S  E ++T LHAGGKF+ K+YKVSGGL
Sbjct: 58  CDHIKIVITKNGSCYVEDNGSGIPVEIHPQTGKSTVETVLTILHAGGKFDNKAYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179
           HGVGVSVVNALS+ LK  IKR G IY   F  G   + L   G    N TGT++ F P  
Sbjct: 118 HGVGVSVVNALSTHLKATIKRNGKIYSQEFQRGKAISSLKEIGKVDKNQTGTKIEFTPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF   +F++D L  R RE++FLN  ++I   D+R  +                    + 
Sbjct: 178 EIFDTVEFSFDILSKRFREMAFLNKGIKIDFTDERINKNEIYHYEGGIKSFVEYINSKKK 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            +P+    I I   R+N SI++A+++   Y E VL F NNI  ++GG+HLSG RSA+T+ 
Sbjct: 238 YEPIHDEIIYIDEIRENTSIEVAIQYTKSYSEEVLTFANNINTEEGGSHLSGFRSAITKT 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  Y  K    K+ + ++ GDD REG T+VLS+K+P+P+F  QTK KL +SE + VV+S 
Sbjct: 298 VNDYGRKYNFIKEKEENLSGDDIREGMTAVLSVKLPNPQFEGQTKAKLGNSETKGVVDSV 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ LS +LEE+P  +K I++K + A   RDAARRAR+++R K  L   +LPGKL DCS+
Sbjct: 358 VSEKLSMFLEENPKTSKAILEKAVAARRARDAARRAREISRAKNNL-DMTLPGKLFDCSD 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
              +KSE+FLVEG+SAGGSAK GR  E QA+LPLRGKI+NVE+A   KML+S EI  +IT
Sbjct: 417 VGSEKSEIFLVEGNSAGGSAKDGRDPEFQAVLPLRGKIMNVEKATEAKMLNSSEIKAMIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTG     FDI+KLRY+KIIIMTDADVDGAHI TLLLTFFFR M  LI NG +Y+ + 
Sbjct: 477 AFGTGY-AGEFDISKLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIENGHVYVAQA 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           PLYG+ +   +      E   +  +    SE+          G ++ + L  
Sbjct: 536 PLYGLEKNSKILRYCHNEEELNLALKAHESEKNINIKRYKGLGEMNYDQLWE 587



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 2/182 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   E  +  +S++   +          +  S    + ++      V    ++   
Sbjct: 454 IMNVEKATEAKMLNSSEIKAMITAFGTGYAGEFDISKLRYNKIIIMTDADVDGAHIMTLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFS-IGRKGISMQR 738
             F F      I +  +      +  L  N   ++       L   + +    K I+++R
Sbjct: 514 LTFFFRYMRPLIENGHVYVAQAPLYGLEKNSKILRYCHNEEELNLALKAHESEKNINIKR 573

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT+NPD R LLRV I D  + DD F  LMG EVEPRREFI EN+  
Sbjct: 574 YKGLGEMNYDQLWETTMNPDNRLLLRVNIEDFDETDDTFQMLMGQEVEPRREFISENAQY 633

Query: 799 SA 800
           + 
Sbjct: 634 AD 635


>gi|313904729|ref|ZP_07838103.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6]
 gi|313470522|gb|EFR65850.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6]
          Length = 645

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 286/588 (48%), Positives = 386/588 (65%), Gaps = 4/588 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            +  + Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L GY   
Sbjct: 6   TVVTNEYGADQIQILEGLEAVRKRPGMYIG-TTSIRGLHHLVYEIVDNSVDEALAGYCSH 64

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+N D S TV D+GRGIP  ++K+ GI A EV+ T LHAGGKF    YKVSGGLHGV
Sbjct: 65  IEVTINQDNSITVVDDGRGIPVGINKKAGIPAVEVVFTVLHAGGKFGGGGYKVSGGLHGV 124

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIF 182
           G SVVNALS WL+++I  +G IY+  +  G     L V G      TGT V F P   IF
Sbjct: 125 GASVVNALSDWLEVQIYHDGKIYKQRYERGKTMYKLKVVGECDPEKTGTRVDFKPDGTIF 184

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               +++ TL+ RLRE +FL   ++I+L D R  + +E    Y+GGI+ FV YL++  + 
Sbjct: 185 EETVYDFKTLKTRLRETAFLTKGLKITLRDAREGQEQEKVFHYEGGIKEFVQYLNKSNEG 244

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L Q  +  +G ++++ ++++M+ ND Y+E V  F NNI   +GG H+ G R ALTR    
Sbjct: 245 LYQDILYFEGVQNDVVVEVSMQHNDSYNETVYGFVNNILTPEGGMHVMGFRQALTRTFND 304

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K    K +  ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE RS V++ V+ 
Sbjct: 305 YGRKMKLLKDNDENLSGEDIREGLTAIISVKIGDPQFEGQTKQKLGNSEARSAVDAVVSK 364

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +LE+HP   K I++K L +   R+AAR+ARDLTRRK  LD  +LPGKLADCS++DP
Sbjct: 365 QLGIYLEQHPDVGKTIIEKSLVSQRAREAARKARDLTRRKTALDGLALPGKLADCSDKDP 424

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           K  E+F+VEGDSAGGSAK  R+R  QAILPLRGKILNVE+AR D++  + EI ++ITA G
Sbjct: 425 KHCEIFIVEGDSAGGSAKVARNRRTQAILPLRGKILNVEKARLDRIYGNAEIRSMITAFG 484

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGI  D FD++KLRY KIIIMTDADVDGAHI TL+LTF +R MP LI +G +Y+ KPPLY
Sbjct: 485 TGI-HDDFDLSKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPELIKSGHVYLAKPPLY 543

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            + R K + Y   +E L   +                 G +  + L  
Sbjct: 544 KVERNKKVWYAYSDEELNKIMNEIGRDGGNRIQRYKGLGEMDADQLWE 591



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 5/106 (4%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGIS-MQRYKGLGEMNASQLWETTLNPDTR 760
             L  +    K+        L+ I +  GR G + +QRYKGLGEM+A QLWETT++P+ R
Sbjct: 540 PPLYKVERNKKVWYAYSDEELNKIMNEIGRDGGNRIQRYKGLGEMDADQLWETTMDPENR 599

Query: 761 SLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LLRV +   DAS+ D  F+ LMGD+VEPRREFI+E +     LDI
Sbjct: 600 VLLRVNMDDDDASEIDLTFTTLMGDKVEPRREFIEERAKDVQNLDI 645


>gi|323486745|ref|ZP_08092064.1| hypothetical protein HMPREF9474_03815 [Clostridium symbiosum
           WAL-14163]
 gi|323399884|gb|EGA92263.1| hypothetical protein HMPREF9474_03815 [Clostridium symbiosum
           WAL-14163]
          Length = 637

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 289/584 (49%), Positives = 401/584 (68%), Gaps = 5/584 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+ D I V 
Sbjct: 3   SEYSADQIQILEGLEAVRKRPGMYIGSTS-MRGLHHLVYEIVDNAVDEALAGFCDTIEVQ 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N D S TV D+GRGIP D+ K+ GI A EV+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 62  INEDNSITVEDDGRGIPVDIQKKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQD 186
           VNALS WL++ I +EG +Y+  +  G +  PL V G    D  GT+VTFLP  DIF    
Sbjct: 122 VNALSEWLEVEIYKEGKVYKQRYERGKVMCPLRVDGECPPDKHGTKVTFLPDKDIFEETV 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YDTL+ RLRE +FL  +++I L D R  +  ++   Y+GGI+ FV+YL++  + L   
Sbjct: 182 YDYDTLKIRLRETAFLTKNLRIVLRDDRDNKKEKV-FHYEGGIKEFVTYLNKSNEKLYAP 240

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G+++ + +++A++ ND Y EN+  F NNI   +GGTHL+G ++ALT+    Y  K
Sbjct: 241 VIYCEGTKEQVYVEVAVQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARK 300

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K ++ ++ G+D REG T+++S+K+ +P+F  QTK+KL +SE R+ V++ V++ L+ 
Sbjct: 301 NKLLKDNEPALSGEDIREGITAIISVKIEEPQFEGQTKQKLGNSEARTAVDAVVSEQLTY 360

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LE++P  AKII +K + A   RDAAR+AR++TRRK VLD  +LPGKLADCS+++ +  E
Sbjct: 361 FLEQNPSVAKIICEKSILAKRARDAARKAREMTRRKSVLDGMALPGKLADCSDKNAENCE 420

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAK+ R++ NQAILPLRGKILNVE+AR D++  + EI  +ITA GTGI 
Sbjct: 421 IYIVEGDSAGGSAKEARNKSNQAILPLRGKILNVEKARLDRIYGNAEIRAMITAFGTGIH 480

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +D FDI KLRY+KIIIMTDADVDGAHI TLLLTF +R MP LI  G +Y+ +PPLY + +
Sbjct: 481 ED-FDIEKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIRQGHVYLAQPPLYKVEK 539

Query: 547 GKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
            K + Y   +E L   L+                G +    L  
Sbjct: 540 NKRVWYAYSDEELNSILMEIGRDTNNKIQRYKGLGEMDAEQLWE 583



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 5/106 (4%)

Query: 703 TILSLICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTR 760
             L  +    ++        L   +  IGR   + +QRYKGLGEM+A QLWETT++P+ R
Sbjct: 532 PPLYKVEKNKRVWYAYSDEELNSILMEIGRDTNNKIQRYKGLGEMDAEQLWETTMDPERR 591

Query: 761 SLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LLRV I +  AS+ D  F+ LMGD+VEPRREFI+ N+     LDI
Sbjct: 592 ILLRVMIDNETASEVDLTFATLMGDQVEPRREFIEANAKYVQNLDI 637


>gi|254410831|ref|ZP_05024609.1| DNA gyrase, B subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196182186|gb|EDX77172.1| DNA gyrase, B subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 856

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 292/845 (34%), Positives = 441/845 (52%), Gaps = 59/845 (6%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+AV++RP MYIG T G  GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 2   TSSYSADQIQVLEGLEAVRRRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
             N DGS +V+D+GRGIPTD H + G SA E +MT LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  DFNSDGSVSVTDDGRGIPTDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS W+ + + RE  ++   +  GI    L V  S  N TGT VTF P + IF+   
Sbjct: 121 VVNALSEWVDVTVWREKKVHTQRYERGIAMGELAVKPSKENRTGTSVTFKPDTQIFTNGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y T+  RLREL++LN  V+I+  D R     + +  Y+GGI+ +V Y++R K+PL Q
Sbjct: 181 EFDYSTVAGRLRELAYLNGGVRITFTDHRISPEHQDSYHYEGGIQEYVGYMNRQKEPLHQ 240

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             I +QG R+N+ +++A++W  D Y +N+L F NNI   DGGTHL GL++ LTR + +  
Sbjct: 241 EIIYVQGERNNVQVEVALQWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTLNAIA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K+ + ++ G++ REG T V+S+K+P+P F  QTK KL ++EVR +V+S V + L
Sbjct: 301 RKRNKLKESESNLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +LE  P  A  +++K + A    +AARRAR+L RRK VL+ + LPGKLADCS RDP +
Sbjct: 361 TEYLEFRPQVADSVLEKAIQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDPAE 420

Query: 425 SELFLVEGDSAGG--------SAKQGRSRENQAILPLR--GKILNVERARFDKMLSSQEI 474
           SE+F+VEGDSAGG        +   GRS   + I+  +  GK       R D  +  + I
Sbjct: 421 SEIFIVEGDSAGGCFDGDTRVALADGRSLSFKEIVAEQAMGKEHFCYTIRHDGKIGLERI 480

Query: 475 GT--LITALGTGI-------------GQDSFDINKLRYHKIIIMTDAD------------ 507
               +  A    I                 F +    Y    ++T  D            
Sbjct: 481 IHPRITKANAQVIQVTLDNGETLICTPDHPFMVRDGSYKAAALLTPEDFLMSLNAKLSER 540

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
             G  +  +    F  ++  +  +  +      P  G     SL+     +  ++  +  
Sbjct: 541 SRGQRLAEIDAAGFNTRLSEVAFSRDVQANAVYPTVGAVGTPSLRPPHSGQDTKESSVAL 600

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDA----------LKIDKLIKDFYPNHDKTFIEQA 616
            + EE     D+  V++   L   +D                 +         +    QA
Sbjct: 601 LVREESPSRKDNHRVVAIERLEKRVDVYDIEVPHTHNFALASGVFVHNSAKQGRDRQFQA 660

Query: 617 VI---SGVFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGV 671
           ++     + N E   +  +   +++ + +  +    K E+    ++    I++      V
Sbjct: 661 ILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEEFDPSNLRYHRIVI-MTDADV 719

Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-- 729
               +      F +  +   +    I      +  +    +         L + + +   
Sbjct: 720 DGAHIRTLLLTFFYRYQRALVDQGYIHIACPPLYKVERGRNHYYCYSDRELTNLVQNEFP 779

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
                ++QR+KGLGEM   QLW+TT+NP+TR++ RV+I DA++AD +F+ LMGD V PRR
Sbjct: 780 ANANYTIQRFKGLGEMMPVQLWDTTMNPETRTMKRVEIEDAAEADRIFTVLMGDRVAPRR 839

Query: 790 EFIQE 794
           EFI+ 
Sbjct: 840 EFIET 844



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 8/209 (3%)

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           SAKQGR R+ QAILPLRGKILN+E+    K+  + EI +LITALG GI  + FD + LRY
Sbjct: 649 SAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEEFDPSNLRY 708

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           H+I+IMTDADVDGAHIRTLLLTFF+R   +L+  G+++I  PPLY + RG++  Y   + 
Sbjct: 709 HRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYIHIACPPLYKVERGRNHYYCYSDR 768

Query: 558 SLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
            L + + N+  +            G +    L +       ++   +       +   E 
Sbjct: 769 ELTNLVQNEFPANANYTIQRFKGLGEMMPVQLWDT-----TMNPETRTMKRVEIEDAAEA 823

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNF 644
             I  V   +              +RL+ 
Sbjct: 824 DRIFTVLMGDRV-APRREFIETYGSRLDL 851


>gi|160944260|ref|ZP_02091489.1| hypothetical protein FAEPRAM212_01769 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444442|gb|EDP21446.1| hypothetical protein FAEPRAM212_01769 [Faecalibacterium prausnitzii
           M21/2]
          Length = 664

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 270/607 (44%), Positives = 381/607 (62%), Gaps = 23/607 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +D + +  Y+A  IQ+LKGL+AV+KRP MYIG T GE GLHH++YE++DNAIDE+L GY 
Sbjct: 11  ADTVTDHEYNASEIQVLKGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAIDEALAGYC 69

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119
           D I V +  D    V+DNGRGIP D+  + G+ A  V+ T LHAGGKF      YKV+GG
Sbjct: 70  DHIEVKILKDNIIQVTDNGRGIPVDIQADTGLPAVTVVYTILHAGGKFGGENSGYKVAGG 129

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPS 178
           LHGVG SVVNA S WL + ++R+G  YE +F  G  D  L   G+ A   TGT VTF P 
Sbjct: 130 LHGVGASVVNACSEWLTVNVRRDGKEYEQTFRRGDPDGDLKCIGTVAEGVTGTRVTFKPD 189

Query: 179 SDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR-------------SPEPREITMF 224
            ++F     +++DTL+ RLRE SFLN+ V+I+L D+R              P  R   M 
Sbjct: 190 PEMFKDTTVYDFDTLEKRLREESFLNAGVKITLTDERQLYTPVLEDGQEGDPCYRSEVMC 249

Query: 225 YKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y+GGI++FV+Y    R  + L  + I ++G  D    ++A+++N  Y+E +L F NN+  
Sbjct: 250 YEGGIKSFVTYLGEKRKLEVLHPNVIYLKGQTDRGVAEIALQYNSSYNELLLSFANNVNT 309

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            DGGTH  G +++LTR    Y       K    ++ G D REG   V+S+K+ +  F  Q
Sbjct: 310 PDGGTHEEGFKASLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQEAEFEGQ 369

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++E+R++V + V   L  + EE+P  AK I +K   A+  R AA++AR+L RRK
Sbjct: 370 TKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKARELVRRK 429

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+ + +PGKLADC E+DP ++E+F+VEGDSAGGSAK GR    QAILPL GK+LNVE+
Sbjct: 430 SALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWGKMLNVEK 489

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR DK+  + ++  ++ ALG GIG D FDI+KLRY K+ IM DADVDG+HI TL+LTFFF
Sbjct: 490 ARADKIYGNDKLMPVVLALGCGIG-DEFDISKLRYDKVFIMADADVDGSHICTLMLTFFF 548

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           R M  LI  G +Y+ +PPL+ + +G +++Y  ++  +   +++Q +           G +
Sbjct: 549 RYMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMA--ILSQEMPGAKVNRYKGLGEM 606

Query: 583 SKNDLRN 589
           +   L  
Sbjct: 607 NPEQLWE 613



 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
             L  +  G+ IK     + +  +      G  + RYKGLGEMN  QLWETT+NPD R +
Sbjct: 565 PPLFKVQKGNTIKYAYNDAEMAILSQE-MPGAKVNRYKGLGEMNPEQLWETTMNPDNRVI 623

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +++ I DA +AD+ F+ LMGD+VEPRR FI+ N+  + LD+
Sbjct: 624 VQITIEDAEKADEAFTILMGDQVEPRRRFIETNAQYAKLDV 664


>gi|227533501|ref|ZP_03963550.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188830|gb|EEI68897.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 653

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 287/601 (47%), Positives = 402/601 (66%), Gaps = 14/601 (2%)

Query: 1   MSDNIQNSS---------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51
           M+D  + +          YDA  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN
Sbjct: 1   MTDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDN 59

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
            IDE+L G+A  I V +N D S TV+D+GRGIP D+  + G  A E + T LHAGGKF  
Sbjct: 60  GIDEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSKTGRPALETVYTVLHAGGKFGG 119

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTG 170
             YKVSGGLHGVG SVVNALS+ L + + R G  Y + FI G ++ P+ V G+A  ++ G
Sbjct: 120 GGYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNTPMKVIGTAPEHEHG 179

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V FLP  DIF+    F+   L  R+REL+FLN  ++++  DKR+    ++   Y+GG+
Sbjct: 180 TKVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGL 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L   K+ L+Q PI ++G    I+++ A+++ + YH  +L F NNI   +GGTH 
Sbjct: 240 KSYVDFLTEKKENLLQEPIYVEGQDKGITVEFALQYTNDYHSTLLTFANNIHTYEGGTHE 299

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ALTR I  Y  +S   K     + GDD REG T+V+S+K PDP+F  QTK KL +
Sbjct: 300 TGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGN 359

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           S+ R+VV+   +D  + +L EHP + K+I+ K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 360 SDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISN 419

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLAD + +DP+ SELF+VEGDSAGGSAK GRSR  QAILP+RGKILNVE+A  +++L
Sbjct: 420 LPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERIL 479

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           +++EI TL TA+GTG G   FDINK RYHK+IIMTDADVDGAHIRTLLLT  +R M  ++
Sbjct: 480 ANEEIRTLFTAMGTGFG-QDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVL 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLR 588
             G++YI +PPLY + +GK  QY+  +E L+D L     S +         G +  N L 
Sbjct: 539 DAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPSPKPEIQRYKGLGEMDANQLW 598

Query: 589 N 589
            
Sbjct: 599 E 599



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 3/71 (4%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QRYKGLGEM+A+QLWETT++PD R LLRV   DA  AD +F  LMGD VEPRR+FI++
Sbjct: 582 EIQRYKGLGEMDANQLWETTMDPDNRRLLRVSPKDAEAADGVFEMLMGDHVEPRRKFIED 641

Query: 795 NSLPS---ALD 802
           N++      +D
Sbjct: 642 NAVFVDPNNID 652


>gi|118470463|ref|YP_885621.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155]
 gi|118171750|gb|ABK72646.1| DNA gyrase, B subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 639

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 274/642 (42%), Positives = 389/642 (60%), Gaps = 6/642 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YDA SI IL+GLD V+KRP MYIG T  E GLHHM++EV+DN +DE++ G+A  +
Sbjct: 1   MSTTNYDAGSITILEGLDVVRKRPGMYIGSTS-ERGLHHMVWEVVDNGVDEAMAGHATRV 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DG   V D+GRGIP  +H E GI   +V+MT+LHAGGKF+ +SY+VSGGLHGVG
Sbjct: 60  DVTLLADGGVQVCDDGRGIPVAMH-ETGIPTVDVVMTQLHAGGKFDSESYQVSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS+ L++ I R+G  +   + + +    L   G+    TGT V F    D+F  
Sbjct: 119 VSVVNALSTRLEVDIHRDGYEWHQHYDHSVPAT-LTR-GNPSGGTGTTVRFWADPDVFET 176

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             ++ +T+  RL+E++FLN  + ++L D+R PEP+  T  + GG+  +V +++R K P+ 
Sbjct: 177 TTYSAETIARRLQEMAFLNKGLILTLTDQRDPEPQTRTFHHPGGLIDYVKHINRVKDPIQ 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            S I  +G      +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y 
Sbjct: 237 PSIIAFEGEGPGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYA 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +     K    ++ GDD REG  +V+S+K+ +P+F  QTK KL ++ +RS V+   ++ L
Sbjct: 297 KDKKLLKDKDPNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNAAIRSFVQKVCHEQL 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WLE +P+EAK+I+ KV  ++  R AAR+AR+L RRK   DI  LPGKLADC   DP K
Sbjct: 357 THWLEANPVEAKVIITKVASSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSK 416

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITALGTG
Sbjct: 417 SELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQSIITALGTG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  D FDI+KLRYHKI++M DADVDG HI TLLLT  FR M  L+ NG +++ +PPLY +
Sbjct: 477 I-HDEFDISKLRYHKIVLMADADVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKL 535

Query: 545 TRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
              +S  ++   +   +  L     + +     D           +  +           
Sbjct: 536 KWQRSEPEFAYSDRERDGLLEAGRAAGKKINVDDGIQRYKGLGEMDAKELWETTMDPSVR 595

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
                       A          D E      ++ A  + F+
Sbjct: 596 VLRQVTLDDAAAADELFSILMGDDVEARRGFITRNAKDIRFL 637



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 554 LLEAGRAAGKK-INVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 612

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMGD+VE RR FI  N+     LDI
Sbjct: 613 SILMGDDVEARRGFITRNAKDIRFLDI 639


>gi|50379847|gb|AAT76294.1| DNA gyrase subunit B [Fusobacterium canifelinum]
          Length = 522

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 248/526 (47%), Positives = 354/526 (67%), Gaps = 6/526 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + +   SY+A +I +L+GL+AV+KRP MYIG T  E GLHH+++E++DN++DE+L GY
Sbjct: 1   MEEIM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V +  +    V DNGRGIPTD+H + G SA E+++T LHAGGKF   +YKVSGGL
Sbjct: 57  CNKIEVKILSENIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS WL+  +++ G +Y   +  G  +  + + GS   ++ GT V F    
Sbjct: 117 HGVGVSVVNALSEWLEAEVRKNGVVYYQKYHRGKPEEDVKIIGSCDESEHGTIVRFKADG 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    +NY TL +RL+EL++LN  + I L D R  E +E    + GGI  F++ + + 
Sbjct: 177 EIFETLIYNYFTLSNRLKELAYLNKGLTIVLSDLRKEEKKEEIYKFDGGILDFLNEIVKE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +  +++ P  +   +DN+ +D+   +    +E +  F NNI   +GGTH+ G R+ALT+ 
Sbjct: 237 EATIIEKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I    +     K     ++G+D REG   ++S K+P P+F  QTK KL +SEV  +V + 
Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L  +LE++P   KII++K+L++   R+AA++AR+L  RK VL++ SLPGKLADC+ 
Sbjct: 357 VSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +  ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A   K L S EI  ++T
Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           A GT IG+  FDI KLRY KII+MTDADVDGAHIRTL+LTF +R M
Sbjct: 477 AFGTSIGET-FDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYM 521


>gi|271961616|ref|YP_003335812.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270504791|gb|ACZ83069.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 647

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 284/566 (50%), Positives = 377/566 (66%), Gaps = 12/566 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA SI +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I VTL
Sbjct: 2   SYDASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADRIEVTL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D    V DNGRGIP  + + EG  A EV++T LHAGGKF+ KSY VSGGLHGVGVSVV
Sbjct: 61  LADNGVRVVDNGRGIPVGIVEAEGRPAVEVVLTVLHAGGKFDSKSYAVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L++ I+ +G+ ++ S+      +PL V G A  +TGT +TF   S IF    +N
Sbjct: 121 NALSSKLEVEIRTDGHHWQQSYAETRPLHPL-VKGEATEETGTSITFWADSTIFETTTWN 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGIEAFVSYLDRHKKPLM 244
           ++TL  R +E++FLN  + ISL D+R              Y+GG+  FV +L+  K+P  
Sbjct: 180 FETLSRRFQEMAFLNKGLTISLRDERPDHINGEPKEATYHYEGGLSDFVKHLNSKKEPAH 239

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            S I  + S + IS+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y 
Sbjct: 240 VSVIDFEESGEGISVEIAMQWNNSYSESVYTFANTINTAEGGTHEEGFRAALTSIVNRYA 299

Query: 305 EKSFGSKK-DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +    K+    ++ G+D REG T+++S+K+ DP+F  QTK KL ++E +S V+   ND 
Sbjct: 300 REQKFLKEGKDDNLAGEDIREGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQKACNDH 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGKLADCSERDP 422
           L  W E +P EAK I+ K L AS  R AAR+ARDLTRRK +L+  + LPGKLADC   DP
Sbjct: 360 LRDWFERNPGEAKDIINKSLQASRARLAARQARDLTRRKSLLESGSGLPGKLADCQWSDP 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           +K ELF+VEGDSAGGSAK GR  + QAILP+RGKILNVE+AR DK+L + E+  LITA+G
Sbjct: 420 EKCELFIVEGDSAGGSAKGGRDSKFQAILPIRGKILNVEKARIDKVLRNTEVQALITAMG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG+  D FDI KLRYHK+I+M DADVDG HI TLLLT  FR M  LI  G +Y+ +PPLY
Sbjct: 480 TGV-HDEFDITKLRYHKLILMADADVDGQHINTLLLTLLFRFMRPLIEAGHVYLSQPPLY 538

Query: 543 GITRGKSLQ---YVKDEESLEDYLIN 565
            I   +  +   Y   +   +  + +
Sbjct: 539 KIKWDRRGEDASYAYSDPERDAIIAD 564



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMNASQLWETT+NP+TR L  V + DA+QAD+LFS LMG++VE RR FI  N
Sbjct: 579 IQRFKGLGEMNASQLWETTMNPETRVLRLVTLDDAAQADELFSVLMGEDVEARRSFIIRN 638

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 639 ARDVRFLDV 647


>gi|167759582|ref|ZP_02431709.1| hypothetical protein CLOSCI_01939 [Clostridium scindens ATCC 35704]
 gi|167662809|gb|EDS06939.1| hypothetical protein CLOSCI_01939 [Clostridium scindens ATCC 35704]
          Length = 644

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 292/592 (49%), Positives = 391/592 (66%), Gaps = 5/592 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M        Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+
Sbjct: 1   MGTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V++N D S TV DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGL
Sbjct: 60  CDTILVSINKDNSITVVDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I  +G IY+  +  G +   L V G    + TGT+VTF P  
Sbjct: 120 HGVGASVVNALSDWLEVEIFSKGKIYKQRYERGKVAQKLAVIGECEPDKTGTKVTFFPDD 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238
            IF   +F+YD L+ R RE++FL   ++I L D+R  E        Y+GGI+ FV YL+R
Sbjct: 180 TIFEETEFDYDILKQRFREMAFLTKGLKIILRDERPEEEPIEKVFHYEGGIKQFVEYLNR 239

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL +  I  +G  + +++++AM+ ND Y +N   F NNI   +GGTH+ G R+ALT+
Sbjct: 240 SKTPLYEDIIYCEGMANGVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIVGFRNALTK 299

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
               Y  K+   + ++ ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V+S
Sbjct: 300 TFNDYARKNKLLRDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDS 359

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V++ L  +LE++P  AK+ ++K + A   R+AAR+ARDLTRRK  LD  SLPGKLADCS
Sbjct: 360 IVSNQLVVYLEQNPSIAKMTIEKSVMAQRAREAARKARDLTRRKSALDGMSLPGKLADCS 419

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ++DPK  E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+  + EI  +I
Sbjct: 420 DKDPKNCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMI 479

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGI  D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +
Sbjct: 480 TAFGTGI-HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYMAQ 538

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           PPLY + + K + Y   +E L+  L                 G +    L +
Sbjct: 539 PPLYKLEKNKKVWYAYSDEELDGILTEVGRDGNNKIQRYKGLGEMDAEQLWD 590



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G  ++ DI   R  + +      ++G+ I +    +  R   + I+E Y       L  
Sbjct: 484 TGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYMAQPPLYK 543

Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        LD I +  GR G + +QRYKGLGEM+A QLW+TT++P+ R LLRV
Sbjct: 544 LEKNKKVWYAYSDEELDGILTEVGRDGNNKIQRYKGLGEMDAEQLWDTTMDPEHRVLLRV 603

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + + +  + D  F+ LMGD+VEPRREFI+EN+     LD+
Sbjct: 604 TMDEETTSELDLTFTTLMGDKVEPRREFIEENAKYVKNLDV 644


>gi|55981555|ref|YP_144852.1| DNA gyrase subunit B [Thermus thermophilus HB8]
 gi|55772968|dbj|BAD71409.1| DNA gyrase, subunit B [Thermus thermophilus HB8]
          Length = 634

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 273/585 (46%), Positives = 372/585 (63%), Gaps = 7/585 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA +I++LKGL+ V+ RP+MYIG T G  G HH+  E+LDNA+DE+L GYA  I V L
Sbjct: 2   SYDASAIRVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEILVRL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS TV DNGRGIP DL  EEG  A EVI T LH+GGKF Q +YKVSGGLHGVG SVV
Sbjct: 61  NEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYTTLHSGGKFEQGAYKVSGGLHGVGASVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDF 187
           NALS W  + + REG  + ++F  G +  PL V G A    TGT VTF P  +IF    F
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRF 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +   ++ RLRE+++L + +++   D++  +        KGG+ +F   L   +  L + P
Sbjct: 181 DPSKIRARLREVAYLVAGLKLVFQDRQHGKE--EVFLDKGGVASFAKALAEGEDLLYEKP 238

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             I+G+   + +++      GY+  +L + N IP +DGGTHL+  +SA +R +  Y +K+
Sbjct: 239 FLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKA 298

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +K+      GDD  EG  +V+S+K+P+P+F  QTK KL++ E  + V   V + L   
Sbjct: 299 GLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEI 358

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEE+P  AK + +K L A+  R+AAR+AR+L RR+  L+   LPGKLADC   +P+++EL
Sbjct: 359 LEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQTENPEEAEL 418

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI-- 485
           F+VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K L + E+  +++A+G GI  
Sbjct: 419 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVSAIGVGIGG 478

Query: 486 -GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G+  FD+  LRYHKIIIMTDADVDG+HIRTLLLTFF+R M  LI  G +YI +PPLY +
Sbjct: 479 DGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYRL 538

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             GK ++Y+  +E L+  L                G ++   L  
Sbjct: 539 QVGKKVEYLYSDEELQARLKELEGKHYEVQRFKGLGEMNPEQLWE 583



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 72/159 (45%)

Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
           I    E  +         ++      V    +      F +      I    +      +
Sbjct: 476 IGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPL 535

Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             L        +     L   +  +  K   +QR+KGLGEMN  QLWETT+NP+ R L R
Sbjct: 536 YRLQVGKKVEYLYSDEELQARLKELEGKHYEVQRFKGLGEMNPEQLWETTMNPEKRVLKR 595

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           V++ DA +A +LF +LMG EV PRREFI+E++  + LDI
Sbjct: 596 VELQDALEASELFEKLMGQEVAPRREFIEEHARYAELDI 634


>gi|191636829|ref|YP_001985995.1| DNA gyrase, B subunit [Lactobacillus casei BL23]
 gi|239630809|ref|ZP_04673840.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301065132|ref|YP_003787155.1| DNA gyrase subunit B [Lactobacillus casei str. Zhang]
 gi|190711131|emb|CAQ65137.1| DNA gyrase, B subunit [Lactobacillus casei BL23]
 gi|239527092|gb|EEQ66093.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300437539|gb|ADK17305.1| DNA gyrase, B subunit [Lactobacillus casei str. Zhang]
 gi|327380868|gb|AEA52344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus casei
           LC2W]
 gi|327384032|gb|AEA55506.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus casei
           BD-II]
          Length = 653

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 287/601 (47%), Positives = 403/601 (67%), Gaps = 14/601 (2%)

Query: 1   MSDNIQNSS---------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51
           M+D  + +          YDA  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN
Sbjct: 1   MTDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDN 59

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
            IDE+L G+A  I V +N D S TV+D+GRGIP D+  + G  A E + T LHAGGKF  
Sbjct: 60  GIDEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSKTGRPALETVYTVLHAGGKFGG 119

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTG 170
             YKVSGGLHGVG SVVNALS+ L + + R G  Y + FI G ++ P+ V G+A  ++ G
Sbjct: 120 GGYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNTPMKVIGTAPEHEHG 179

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V FLP  DIF+    F+   L  R+REL+FLN  ++++  DKR+    ++   Y+GG+
Sbjct: 180 TKVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGL 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L   K+ L+Q PI ++G    I++++A+++ + YH  +L F NNI   +GGTH 
Sbjct: 240 KSYVDFLTEKKENLLQEPIYVEGQDKGITVEVALQYTNDYHSTLLTFANNIHTYEGGTHE 299

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ALTR I  Y  +S   K     + GDD REG T+V+S+K PDP+F  QTK KL +
Sbjct: 300 TGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGN 359

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           S+ R+VV+   +D  + +L EHP + K+I+ K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 360 SDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISN 419

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLAD + +DP+ SELF+VEGDSAGGSAK GRSR  QAILP+RGKILNVE+A  +++L
Sbjct: 420 LPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERIL 479

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           +++EI TL TA+GTG G   FDINK RYHK+IIMTDADVDGAHIRTLLLT  +R M  ++
Sbjct: 480 ANEEIRTLFTAMGTGFG-QDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVL 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLR 588
             G++YI +PPLY + +GK  QY+  +E L+D L     S +         G +  N L 
Sbjct: 539 DAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPSPKPEIQRYKGLGEMDANQLW 598

Query: 589 N 589
            
Sbjct: 599 E 599



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 3/71 (4%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QRYKGLGEM+A+QLWETT++PD R LLRV   DA  AD +F  LMGD VEPRR+FI++
Sbjct: 582 EIQRYKGLGEMDANQLWETTMDPDNRRLLRVSPKDAEAADGVFEMLMGDHVEPRRKFIED 641

Query: 795 NSLPS---ALD 802
           N++      +D
Sbjct: 642 NAVFVDPNNID 652


>gi|154482535|ref|ZP_02024983.1| hypothetical protein EUBVEN_00202 [Eubacterium ventriosum ATCC
           27560]
 gi|149736560|gb|EDM52446.1| hypothetical protein EUBVEN_00202 [Eubacterium ventriosum ATCC
           27560]
          Length = 635

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 255/587 (43%), Positives = 370/587 (63%), Gaps = 10/587 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YD +SI +L+GLD V+KRP MYIG   G  GL+H+IYE++DN++DE L GY   ITVT
Sbjct: 3   NNYDGNSISVLEGLDPVRKRPGMYIGSV-GTKGLNHLIYEIVDNSVDEHLAGYCSEITVT 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DGS TV DNGRGIP D++++ G  A EV+ T LHAGGKF   +YK+SGGLHGVG SV
Sbjct: 62  LEKDGSATVEDNGRGIPVDINEQVGRPAVEVVFTTLHAGGKFGDGNYKISGGLHGVGSSV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS WL++ +KR+G IY   +  G +   L   G    NDTGT+V+F P ++IF    
Sbjct: 122 VNALSLWLEVNVKRDGKIYNQRYEQGKVCYDLKEAGKCRKNDTGTKVSFFPDAEIFEKIY 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F  D+++ RL E ++LN ++ I  I+KR  E  E+T   + GI+AF+S +++ K+ +   
Sbjct: 182 FKADSIKSRLHETAYLNPNLTIIFINKRVGEEEEVTFHEENGIKAFISDMNKEKEKVT-D 240

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +  +D I +++A ++ + + EN+  F NNI  ++GGTH++G +S LT  I  Y  +
Sbjct: 241 IIYFKKEQDGIEVEIAFQYINDFTENISGFCNNIYTQEGGTHITGFKSILTSTINQYARE 300

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K+   +  G D R G  +V+++K PDPRF  QTK KL + +   V +S   + L+ 
Sbjct: 301 LGILKEKDNNFTGADVRNGLVAVVAVKHPDPRFEGQTKTKLDNPDAEKVTKSIAGEQLTL 360

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + +++    K ++     ++ +R A  R +     K    I S  GKL++C  R P++ E
Sbjct: 361 FFDKNLETLKNVISCAEKSAKIRKAEERTKTNLLSKSKFSIDS-NGKLSNCESRKPEECE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +F+VEGDSAGGSAK  R+R+ QAI+P+RGKILNVE+A  DK+L++ EI T+I A G G  
Sbjct: 420 IFIVEGDSAGGSAKSARNRKTQAIMPIRGKILNVEKASMDKVLANAEIKTMINAFGCGFS 479

Query: 487 Q---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           +   + FDI KLRY+KII+MTDADVDGAHI TLLLTFF+R MP LI +G +YI  PPLY 
Sbjct: 480 EGYGNDFDIEKLRYNKIILMTDADVDGAHIDTLLLTFFYRFMPELITHGHIYIATPPLYK 539

Query: 544 -ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            + +    +Y+ D+++LE Y  +   +          G +    L  
Sbjct: 540 VVPKKGEGEYLYDDKALEKYRKHH--TGFTLQRYKGLGEMDPKQLWE 584



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 112/307 (36%), Gaps = 24/307 (7%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DA+     I    LT FF +    + N    I         R    +   +  S   + I
Sbjct: 345 DAEKVTKSIAGEQLTLFFDKNLETLKN---VISCAEKSAKIRKAEERTKTNLLSKSKFSI 401

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
           + +          +       +   FI +        K       +  +   +   + N 
Sbjct: 402 DSNGK------LSNCESRKPEECEIFIVEGDSAGGSAKSARNRKTQAIM--PIRGKILNV 453

Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR----GVQEQFVLEGS 680
           E      V   +++   +N       + +    +   +   +I       V    +    
Sbjct: 454 EKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDIEKLRYNKIILMTDADVDGAHIDTLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIGRK---GISM 736
             F +    + I    I      +  ++   G+   +       D      RK   G ++
Sbjct: 514 LTFFYRFMPELITHGHIYIATPPLYKVVPKKGEGEYLYD-----DKALEKYRKHHTGFTL 568

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEM+  QLWETTLNP+TR L +V+I DA  A D+ S LMG EV PRR FI  ++
Sbjct: 569 QRYKGLGEMDPKQLWETTLNPETRILKQVEIEDAKMASDVTSMLMGSEVAPRRNFIYTHA 628

Query: 797 LPSALDI 803
             + LDI
Sbjct: 629 TDAELDI 635


>gi|146319164|ref|YP_001198876.1| DNA gyrase subunit B [Streptococcus suis 05ZYH33]
 gi|253752208|ref|YP_003025349.1| DNA gyrase subunit B [Streptococcus suis SC84]
 gi|253754034|ref|YP_003027175.1| DNA gyrase subunit B [Streptococcus suis P1/7]
 gi|253755968|ref|YP_003029108.1| DNA gyrase subunit B [Streptococcus suis BM407]
 gi|145689970|gb|ABP90476.1| DNA gyrase [Streptococcus suis 05ZYH33]
 gi|226237519|dbj|BAH47268.1| DNA gyrase subunit B [Streptococcus suis]
 gi|251816497|emb|CAZ52133.1| DNA gyrase subunit B [Streptococcus suis SC84]
 gi|251818432|emb|CAZ56261.1| DNA gyrase subunit B [Streptococcus suis BM407]
 gi|251820280|emb|CAR46765.1| DNA gyrase subunit B [Streptococcus suis P1/7]
 gi|319758597|gb|ADV70539.1| DNA gyrase subunit B [Streptococcus suis JS14]
          Length = 650

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 281/628 (44%), Positives = 403/628 (64%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++ I++       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + + G +Y   +  G +   L V G   + +GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++  L  R++EL+FLN  + +S+ DKR    +     Y+GGI ++V 
Sbjct: 179 TPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKEYHYEGGIASYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K  + ++PI  +G  D+I++++AM++   YHENV+ F NNI   +GGTH  G R+
Sbjct: 239 YLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     +D  + +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D  K+ELF+VEGDSAGGSAK GR RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDAAKTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YGI  G  ++     +   +       + E      SK  I +      +DD 
Sbjct: 538 YIAQPPIYGIKVGSEIKEYI--QPGVNQEQELQDALERHSTGRSKPTIQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMNPENRLMARVSVDDAAEADKI 623



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 2/85 (2%)

Query: 721 SLLDTIF--SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            L D +   S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F 
Sbjct: 566 ELQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIFD 625

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
            LMGD+VEPRREFI+EN++ S LD+
Sbjct: 626 MLMGDKVEPRREFIEENAVYSTLDV 650


>gi|218296312|ref|ZP_03497068.1| DNA gyrase, B subunit [Thermus aquaticus Y51MC23]
 gi|218243384|gb|EED09914.1| DNA gyrase, B subunit [Thermus aquaticus Y51MC23]
          Length = 641

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 271/590 (45%), Positives = 365/590 (61%), Gaps = 8/590 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +  SYDA +I++LKGL+ V+ RP+MYIG T G  G HH+  E+LDNA+DE+L GYA  I
Sbjct: 4   TEGVSYDASAIKVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEI 62

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T TLN DGS TV DNGRGIP DL  EEG  A EVI T LH+GGKF   +YKVSGGLHGVG
Sbjct: 63  TTTLNPDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYTTLHSGGKFESGAYKVSGGLHGVG 122

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183
            SVVNALS W  + + R+G  + ++F  G +  PL V G      TGT VTF P   IF 
Sbjct: 123 ASVVNALSEWTVVEVFRDGKHHRIAFSRGEVTEPLQVVGPTPKGKTGTRVTFKPDPQIFG 182

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   ++ RL+E+SFL + +++   D      RE     KGG+ +F   L   ++ L
Sbjct: 183 NLTFDPSKIRARLKEVSFLVAGLRLVFKDLIHG--REEVFQDKGGVASFAKALAEGEELL 240

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + P  I+G    + +++      GY   +L + N IP +DGGTHL+  ++A +R +  Y
Sbjct: 241 YEKPFLIRGQEGEVEVEVGFIHTKGYTTEILTYANMIPTRDGGTHLTAFKAAYSRALNQY 300

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K+  +K+      GDD  EG  +V+S+K+P P+F  QTK KL++ E  + V   V + 
Sbjct: 301 AKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPQPQFEGQTKGKLLNPEAGTAVGQVVYEK 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L   LEE+P  AK + +K L A+  R+AAR+AR+L RR+  L+   LPGKLADC   +P+
Sbjct: 361 LLEILEENPRIAKTVYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADCQTENPE 420

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELF+VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K L + E+  ++ A+G 
Sbjct: 421 EAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVAAIGA 480

Query: 484 GI----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           G+     +  FD+  LRYHKIIIMTDADVDG+HIRTLLLTFF+R M  LI  G +YI +P
Sbjct: 481 GLSGTGEEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +  GK ++Y+  +E L   L                G ++   L  
Sbjct: 541 PLYRLQVGKKVEYLYSDEELAQRLKELEGKSYEVQRFKGLGEMNPEQLWE 590



 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 71/155 (45%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E  +         ++      V    +      F +      I    +      +  L 
Sbjct: 487 EEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYRLQ 546

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  +     L   +  +  K   +QR+KGLGEMN  QLWETT+NP+ R L RV++ 
Sbjct: 547 VGKKVEYLYSDEELAQRLKELEGKSYEVQRFKGLGEMNPEQLWETTMNPEKRVLKRVELQ 606

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           DA +A +LF +LMG EV PRREFI+E++  + +D+
Sbjct: 607 DALEASELFEKLMGQEVAPRREFIEEHARYAQIDV 641


>gi|118470567|ref|YP_884428.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155]
 gi|152032506|sp|A0QNE0|GYRB_MYCS2 RecName: Full=DNA gyrase subunit B
 gi|152032507|sp|P0C559|GYRB_MYCSM RecName: Full=DNA gyrase subunit B
 gi|118171854|gb|ABK72750.1| DNA gyrase, B subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 675

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 274/678 (40%), Positives = 386/678 (56%), Gaps = 38/678 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+   N     Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ 
Sbjct: 1   MAAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+A  + V ++ DGS  V D+GRGIP ++H   G+   +V+MT+LHAGGKF+ ++Y VSG
Sbjct: 60  GFATRVDVKIHADGSVEVRDDGRGIPVEMHA-TGMPTIDVVMTQLHAGGKFDGETYAVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L+  + R+G  +   +   +    L   G    +TGT + F   
Sbjct: 119 GLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVP-GKLKQGGETK-ETGTTIRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
            +IF   D+N++T+  RL+E++FLN  + I L D+R                        
Sbjct: 177 PEIFETTDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y GG+  +V +++R K P+ QS I   G      +++AM+WN G
Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P EAK +V K + ++  
Sbjct: 357 VISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+ ++ITALGTGI  D FDI+KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQSIITALGTGI-HDEFDISKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  L+ NG +++ +PPLY +   +S  ++   +   +  L    
Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEAGR 595

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
            + +     D           +  +                       A          D
Sbjct: 596 AAGKKINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655

Query: 628 QEINVSLASKLANRLNFI 645
            E   S  ++ A  + F+
Sbjct: 656 VEARRSFITRNAKDVRFL 673



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LLEAGRAAGKK-INVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675


>gi|258650278|ref|YP_003199434.1| DNA gyrasesubunit B [Nakamurella multipartita DSM 44233]
 gi|258553503|gb|ACV76445.1| DNA gyrase, B subunit [Nakamurella multipartita DSM 44233]
          Length = 670

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 269/633 (42%), Positives = 379/633 (59%), Gaps = 35/633 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   + + Y A SI +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ GY
Sbjct: 1   MT--TKKNEYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD + V L  DG  TV DNGRGIP ++H +E     EV++T LHAGGKF+  SY VSGGL
Sbjct: 58  ADRVEVILRADGGVTVIDNGRGIPVEMHPKEKKPTVEVVLTVLHAGGKFDSDSYAVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ L + I R+G+ Y  S+       PL   G +   TG+ VTF P  +
Sbjct: 118 HGVGVSVVNALSTRLDVEIHRDGHAYRQSYRYAKP-GPLETIGPSS-RTGSSVTFWPDGE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------- 214
           IF   +F  +T+  RL+E++FLN  + I+L D+R                          
Sbjct: 176 IFETVEFKLETISRRLQEMAFLNKGLTITLRDERRTDVELEEIAESGANAVPVEAEPTTP 235

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
             + +P E T  Y GG+  ++ +L+  K P+  S +  +   + + +++AM+WN  Y+E+
Sbjct: 236 AKAWKPLERTFHYPGGLVDYIKHLNHTKDPIHPSIVGFESKGETMEVEVAMQWNSSYNES 295

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RS+LT  +  Y       K+    + G+D REG  +++SI
Sbjct: 296 VHSFANTINTHEGGTHEEGFRSSLTSVVNKYATDKKLLKEKDDKLSGEDVREGLAAIISI 355

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           ++ +P+F  QTK KL ++E +S V+   N+ ++ W E +P EAK I+ K + ++  R AA
Sbjct: 356 RLREPQFEGQTKGKLGNTEAKSFVQKACNEWIADWFERNPSEAKTIISKAVSSAQARAAA 415

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDL RRKG L+I  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 416 RKARDLVRRKGALEIGGLPGKLADCRSTDPSKSELYIVEGDSAGGSAKSGRDSMFQAILP 475

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKI+NVE+AR D++L + E+ +LITALGTGI  D FD+ KLRYHKI++M DADVDG H
Sbjct: 476 IRGKIINVEKARIDRVLRNTEVQSLITALGTGI-HDDFDLAKLRYHKIVLMADADVDGQH 534

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEE 571
           IRTLLLT  FR M  L+  G +Y+ +PPLY I   K + ++   +   +  +     +  
Sbjct: 535 IRTLLLTLLFRFMRPLVEAGHVYLAQPPLYKIKWSKGAHEFAYSDRERDGLIAEGERAGR 594

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             +  +           N  +            
Sbjct: 595 RMIKDEGVQRYKGLGEMNAKELWETTMDPANRL 627



 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 12/89 (13%)

Query: 724 DTIFSIGRK---------GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           D + + G +         G  +QRYKGLGEMNA +LWETT++P  R LL+V + DA+ AD
Sbjct: 583 DGLIAEGERAGRRMIKDEG--VQRYKGLGEMNAKELWETTMDPANRLLLQVTLEDAATAD 640

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSA-LD 802
           +LFS LMG++VE RR FI  N+     LD
Sbjct: 641 ELFSVLMGEDVEARRAFITRNAKDVRFLD 669


>gi|188588443|ref|YP_001919471.1| DNA gyrase subunit B [Clostridium botulinum E3 str. Alaska E43]
 gi|251778873|ref|ZP_04821793.1| DNA gyrase, B subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188498724|gb|ACD51860.1| DNA gyrase, B subunit [Clostridium botulinum E3 str. Alaska E43]
 gi|243083188|gb|EES49078.1| DNA gyrase, B subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 635

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 298/641 (46%), Positives = 423/641 (65%), Gaps = 9/641 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N  YD + IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY   
Sbjct: 2   EQNNQKYDENQIQVLEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNSIDEALAGYCKN 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +N D S T SD+GRG+P  +H +   SA EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 61  IKVKINKDNSITSSDDGRGMPVGMHPKMHKSAVEVIMTILHAGGKFGGGGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS    + +KREG+I++  +  G +   L   G    ++GT + F P ++IF 
Sbjct: 121 GASVVNALSEQCIVTVKREGHIWQQEYSKGKVLYDLKQIGDTE-ESGTTIYFKPDAEIFD 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F++DTL  RLREL+FLN  + I+LID R  + RE   +Y+GGI++FV+YL+R+K PL
Sbjct: 180 EVEFDFDTLSQRLRELAFLNKGINITLIDCR--DDREENYYYEGGIKSFVAYLNRNKTPL 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI ++G +D ++++L +++NDGY EN+  F NNI   +GGTHL G ++ALTR    Y
Sbjct: 238 HPEPIYVEGIKDKVTVELGLQYNDGYTENLFSFANNIDTIEGGTHLVGFKTALTRAFNDY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++    K++ ++  GDD REG T+V+S+K+ DP+F  QTK KL +SEV+ +V+S V++ 
Sbjct: 298 AKRFGFIKENDKNFSGDDIREGLTAVISVKIEDPQFEGQTKTKLGNSEVKGIVDSIVSEY 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +  +LEE+P  +KII+ K L A+  R+AAR+AR+LT RK VL+  +LPGKLADCS +DP+
Sbjct: 358 IGIFLEENPGTSKIIIDKALMAARAREAARKARELT-RKSVLERTTLPGKLADCSSKDPR 416

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L+S+ I +++TA G 
Sbjct: 417 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILNSETIRSMVTAFGG 476

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPL+ 
Sbjct: 477 GIGKD-FDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYIAQPPLFR 535

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK   Y   +  L+  L +    +        KG+   N  + +      +D   + 
Sbjct: 536 VGKGKKETYAYSDAELDQVLQDMGGKDNSVDIQRYKGLGEMNATQLW---DTTMDPSKRI 592

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                 +  +    I  +   E  +     +     N +N 
Sbjct: 593 LLKAEIEDAMAADEIFTILMGEKVEPRREFIEQNAKNVVNL 633



 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI--CNGDKIKITGPCSLLDTIFSIGRK--GISM 736
            + +F  +Y R    +                  +        L   +  +G K   + +
Sbjct: 508 LLLTFFYRYMRELVEQGHVYIAQPPLFRVGKGKKETYAYSDAELDQVLQDMGGKDNSVDI 567

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA+QLW+TT++P  R LL+ +I DA  AD++F+ LMG++VEPRREFI++N+
Sbjct: 568 QRYKGLGEMNATQLWDTTMDPSKRILLKAEIEDAMAADEIFTILMGEKVEPRREFIEQNA 627

Query: 797 LP-SALDI 803
                LDI
Sbjct: 628 KNVVNLDI 635


>gi|260579565|ref|ZP_05847436.1| DNA gyrase subunit B [Corynebacterium jeikeium ATCC 43734]
 gi|258602336|gb|EEW15642.1| DNA gyrase subunit B [Corynebacterium jeikeium ATCC 43734]
          Length = 674

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 271/653 (41%), Positives = 388/653 (59%), Gaps = 38/653 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  + S Y A SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GY
Sbjct: 1   MAEPQKQSDYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  ++VTL  DG   V D+GRGIP + H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 60  AKEVSVTLLADGGVEVIDDGRGIPVEDHP-TGPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IKR+G ++  +F   +    L     A   TGT+  F P  +
Sbjct: 119 HGVGISVVNALSTRMETEIKRDGYLWRQNFNEAVP-EELQQVKKA-RGTGTKQRFWPDPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------------ 222
           IF   +FN+DT+  RL+E++FLN  + I L+D+R     +                    
Sbjct: 177 IFETVEFNFDTVAKRLQEMAFLNKGLTIKLVDERENLEDDEELEAAAEDAAAPKSTEEKA 236

Query: 223 -------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
                          Y  G++ +V+Y++R +  +  + I    + ++  +++A++WN G+
Sbjct: 237 AEAEKKKGPRTRVFHYPEGLKDYVAYINRKRTAIHPTIISFDVAEEDHEVEVALQWNSGF 296

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            ++V  F N I   +GGTH  G R+ALT  +  Y       K     + GDD REG  +V
Sbjct: 297 SQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYARDHKLLKAKDPKLSGDDVREGLAAV 356

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+++ DP+F  QTK KL ++E++  V+  VN+ L+ WL+ +P EAK IV K + ++  R
Sbjct: 357 ISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLADWLDANPAEAKAIVDKAVASAHAR 416

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           DAAR+ARD+ RRK   DI  LPGKLADC  RDPK SEL++VEGDSAGGSAK GR    QA
Sbjct: 417 DAARKARDMVRRKSASDIGGLPGKLADCRSRDPKLSELYIVEGDSAGGSAKSGRDSMYQA 476

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVD
Sbjct: 477 ILPLRGKILNVEKARMDKVLKNNEVQAIITALGTGI-HDEFDIKKLRYHKIVLMADADVD 535

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G HI TLLLT  FR M  L+  G++Y+ +PPLY +   K        +   D  + + L+
Sbjct: 536 GQHIATLLLTLLFRFMRPLVEEGYVYLAQPPLYKLKWAKGEPGFAFSDRERDEQLEEGLA 595

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           +  ++  D    I +      ++     +  +        +  +E A  +   
Sbjct: 596 QGRKINKDDG--IQRYKGLGEMNAKELWETTMDPTVRTLRRVDLEDAAAADEI 646



 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 6/86 (6%)

Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L+   + GRK I+    +QRYKGLGEMNA +LWETT++P  R+L RV + DA+ AD++FS
Sbjct: 590 LEEGLAQGRK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRTLRRVDLEDAAAADEIFS 648

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMGD+V  RR FI +N+     LD+
Sbjct: 649 VLMGDDVVARRSFITKNARDVRFLDV 674


>gi|223934277|ref|ZP_03626203.1| DNA gyrase, B subunit [Streptococcus suis 89/1591]
 gi|330833155|ref|YP_004401980.1| DNA gyrase subunit B [Streptococcus suis ST3]
 gi|223897052|gb|EEF63487.1| DNA gyrase, B subunit [Streptococcus suis 89/1591]
 gi|329307378|gb|AEB81794.1| DNA gyrase subunit B [Streptococcus suis ST3]
          Length = 650

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 281/628 (44%), Positives = 403/628 (64%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++ I++       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + + G +Y   +  G +   L V G   + +GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++  L  R++EL+FLN  + +S+ DKR    +     Y+GGI ++V 
Sbjct: 179 TPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKEYHYEGGIASYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K  + ++PI  +G  D+I++++AM++   YHENV+ F NNI   +GGTH  G R+
Sbjct: 239 YLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     +D  + +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D  K+ELF+VEGDSAGGSAK GR RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDATKTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YGI  G  ++     +   +       + E      SK  I +      +DD 
Sbjct: 538 YIAQPPIYGIKVGSEIKEYI--QPGVNQEQELQDALERHSTGRSKPTIQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMNPENRLMARVSVDDAAEADKI 623



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 2/85 (2%)

Query: 721 SLLDTIF--SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            L D +   S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F 
Sbjct: 566 ELQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIFD 625

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
            LMGD+VEPRREFI+EN++ S LD+
Sbjct: 626 MLMGDKVEPRREFIEENAVYSTLDV 650


>gi|313890482|ref|ZP_07824110.1| DNA gyrase, B subunit [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120999|gb|EFR44110.1| DNA gyrase, B subunit [Streptococcus pseudoporcinus SPIN 20026]
          Length = 650

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 281/613 (45%), Positives = 400/613 (65%), Gaps = 6/613 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  I V 
Sbjct: 13  QEYDASQIQVLEGLEAVRMRPGMYIGSTSSE-GLHHLVWEIVDNSIDEALAGFASHIEVI 71

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 72  IEEDNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 131

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186
           VNALS+ L +R+ + G I+   F  G++ + L + G     TGT V F P  +IF+    
Sbjct: 132 VNALSTQLDVRVYKNGQIHYQEFKRGVVVDDLTIIGETE-LTGTTVHFTPDPEIFTETVI 190

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN+D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI ++V YL+  K  ++++
Sbjct: 191 FNFDKLAKRIQELAFLNRGLRISISDKRKGMQQEKDFHYEGGIGSYVEYLNEKKDVIIET 250

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI   G  D I++++AM++  GYHENV+ F NNI   +GGTH  G R+ALTR I  Y +K
Sbjct: 251 PIYTDGEMDGIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKK 310

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++    
Sbjct: 311 NKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFHR 370

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D  ++E
Sbjct: 371 FLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDASQNE 430

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG G
Sbjct: 431 LFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFG 490

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+YG+  
Sbjct: 491 AD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKV 549

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           G  ++        ++  +  +L  E      SK  + +      +DD    +  +     
Sbjct: 550 GNEIKEYIQPGVNQEIQLQDAL--EKYSSGRSKPSVQRYKGLGEMDDHQLWETTMDPENR 607

Query: 607 NHDKTFIEQAVIS 619
              K  ++ A  +
Sbjct: 608 LMAKVTVDDAAEA 620



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/107 (46%), Positives = 67/107 (62%), Gaps = 6/107 (5%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLN 756
           +    I   I  G   +I     L D +     GR   S+QRYKGLGEM+  QLWETT++
Sbjct: 548 KVGNEIKEYIQPGVNQEI----QLQDALEKYSSGRSKPSVQRYKGLGEMDDHQLWETTMD 603

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           P+ R + +V + DA++AD +F  LMGD VEPRREFI+EN++ S LDI
Sbjct: 604 PENRLMAKVTVDDAAEADRVFDMLMGDRVEPRREFIEENAVYSTLDI 650


>gi|150014898|ref|YP_001307152.1| DNA gyrase subunit B [Clostridium beijerinckii NCIMB 8052]
 gi|149901363|gb|ABR32196.1| DNA gyrase, B subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 635

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 302/643 (46%), Positives = 423/643 (65%), Gaps = 13/643 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N  YD + IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY + 
Sbjct: 2   EQNNRKYDENQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCNK 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +N D S TV+D+GRG+P  +H + G S  EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 61  IEVYINEDNSITVNDDGRGMPVGIHPKMGKSTVEVIMTILHAGGKFGGGGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS    + + R+G+I++  +  G + N L   G + + TGT+  F P ++IF 
Sbjct: 121 GASVVNALSEECTVTVNRDGHIWQQKYSKGKVLNELTKVGDS-DQTGTQTYFKPDAEIFD 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+++ L  RLREL+FLN  + I L+DKR  +       Y+GGI++FVSYL+R+K PL
Sbjct: 180 EIVFDFEILSQRLRELAFLNKGIYIRLVDKRDEKE--EVFHYEGGIKSFVSYLNRNKVPL 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + PI I+G +DNIS+++A+++NDGY EN+  F NNI   +GGTHL G ++ALTR    Y
Sbjct: 238 HEEPIYIEGVKDNISVEVALQYNDGYTENIFSFANNIDTVEGGTHLVGFKTALTRVFNDY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K    K++ ++  GDD REG T V+SIK+ +P+F  QTK KL +SEVR +V+S V + 
Sbjct: 298 AKKFGHIKENDKNFTGDDIREGLTGVISIKIEEPQFEGQTKTKLGNSEVRGIVDSIVGEN 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +  +LEE+P   K+IV K L A+  RDAAR+AR+LT RK VL+ ++LPGKLADCS +DP+
Sbjct: 358 IGIFLEENPNIGKMIVDKALMAARARDAARKARELT-RKSVLERSTLPGKLADCSSKDPR 416

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+++VEGDSAGGSAKQGR+R+ QAILPLRGKILNVE+ R D++L++  I ++ITA G 
Sbjct: 417 ECEIYIVEGDSAGGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMITAFGA 476

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG D FD+ K+RY++IIIMTDADVDGAHIRTLLLTFF+R M +LI +G +YI +PPLY 
Sbjct: 477 GIGND-FDVEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRNLIDDGHVYIAQPPLYK 535

Query: 544 ITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           +++ K   Y   +  LE  L       +          G ++ + L +       +D   
Sbjct: 536 VSKSKKEYYAYSDPELESVLSELGGKDNSTDIQRYKGLGEMNASQLWDT-----TMDPEK 590

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +     + +  +    I  +   E  +     +     N +N 
Sbjct: 591 RILLKVNIEDAMAADEIFTILMGEKVEPRKEFIQQNARNVVNL 633



 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  A  + + +          +       + ++      V    +    
Sbjct: 450 ILNVEKQRLDRILNADTIRSMITAFGAGIGNDFDVEKIRYNRIIIMTDADVDGAHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQR 738
             F +      I    +      +  +  +  +        L   +  +G K  S  +QR
Sbjct: 510 LTFFYRYMRNLIDDGHVYIAQPPLYKVSKSKKEYYAYSDPELESVLSELGGKDNSTDIQR 569

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMNASQLW+TT++P+ R LL+V I DA  AD++F+ LMG++VEPR+EFIQ+N+  
Sbjct: 570 YKGLGEMNASQLWDTTMDPEKRILLKVNIEDAMAADEIFTILMGEKVEPRKEFIQQNARN 629

Query: 799 -SALDI 803
              LDI
Sbjct: 630 VVNLDI 635


>gi|293376413|ref|ZP_06622647.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909]
 gi|325839309|ref|ZP_08166775.1| DNA gyrase, B subunit [Turicibacter sp. HGF1]
 gi|292644969|gb|EFF63045.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909]
 gi|325490591|gb|EGC92906.1| DNA gyrase, B subunit [Turicibacter sp. HGF1]
          Length = 639

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 293/646 (45%), Positives = 411/646 (63%), Gaps = 11/646 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       YDA +IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY
Sbjct: 1   MTQETTTQQYDASNIQVLEGLEAVRKRPGMYIGSTS-GRGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V +  +    V DNGRGIP D+HK+ G S  E + T LHAGGKF    YKVSGGL
Sbjct: 60  CTEINVAITENNEIIVKDNGRGIPVDVHKQTGKSTVETVYTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS +L++ + R G  Y  SF  G   N L V G + + TGTEV F P  +
Sbjct: 120 HGVGASVVNALSEYLEVTVSRNGKKYFQSFEKGTPMNELHVIGES-DTTGTEVKFKPDPE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    ++YD L++R+REL+FLN  ++I+L D RS +P+     ++GGI  +VS+L+++
Sbjct: 179 IFTETTVYDYDILRNRIRELAFLNKGLKITLEDLRSEKPQRHEFHFEGGISEYVSFLNKN 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ + +  I ++G RD IS+++AM++N G   N+  F NNI   +GGTH +G R+ALTR 
Sbjct: 239 KEVIHEDVIYVEGERDGISVEIAMQYNTGVAGNIYSFANNINTHEGGTHEAGFRAALTRI 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY +K+    K   ++IG+D REG T+++S K PDP+F  QTK KL +SEVR + ++ 
Sbjct: 299 INSYAKKAN-LLKGDDALIGEDIREGLTAIISAKHPDPQFEGQTKTKLGNSEVRRIADNV 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++G   +L E+P  AK+I+ K L A+  R AA+RAR++ RRK  L+      KLADC  
Sbjct: 358 FSEGFERFLMENPQAAKLILDKSLMAARARMAAKRAREMVRRKSPLESLGFKSKLADCQS 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RD   SELF+VEGDSAGGSAKQGR  + QAILPLRGK+LNVE+AR DK+ ++ EI ++I 
Sbjct: 418 RDANISELFIVEGDSAGGSAKQGRDNKFQAILPLRGKVLNVEKARIDKVYANNEIKSMIH 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTG+G D FDI K RYHK++IMTDADVDGAHIRTLLLTFF+R M  LI NG++YI +P
Sbjct: 478 AIGTGVG-DEFDIEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIENGYVYIAQP 536

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598
           PL+ I++GK ++Y   +E LE  +   S +           G ++   L         +D
Sbjct: 537 PLFKISQGKRIEYAYSQEELEAVMETLSATPRPNVQRYKGLGEMNAEQLWET-----TMD 591

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             ++          +E   I  +   +  +     + +      N 
Sbjct: 592 PEVRTLLQVTLDDAVEADEIFDMLMGDRVEPRREFIDANAKYVTNL 637



 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 4/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +   V   +++ + ++ I       +         +V      V    +    
Sbjct: 455 VLNVEKARIDKVYANNEIKSMIHAIGTGVGDEFDIEKARYHKVVIMTDADVDGAHIRTLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQR 738
             F +      I +  +       L  I  G +I+       L+ +          ++QR
Sbjct: 515 LTFFYRYMRPLIENGYVY-IAQPPLFKISQGKRIEYAYSQEELEAVMETLSATPRPNVQR 573

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMNA QLWETT++P+ R+LL+V + DA +AD++F  LMGD VEPRREFI  N+  
Sbjct: 574 YKGLGEMNAEQLWETTMDPEVRTLLQVTLDDAVEADEIFDMLMGDRVEPRREFIDANAKY 633

Query: 799 S-ALD 802
              LD
Sbjct: 634 VTNLD 638


>gi|261749362|ref|YP_003257047.1| DNA gyrase subunit B [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497454|gb|ACX83904.1| DNA gyrase subunit B [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 642

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 272/633 (42%), Positives = 404/633 (63%), Gaps = 19/633 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N+ Y ADSIQ L+G++ ++ RPSMYIGD  G  GLHH++ EV+DN++DESL GY
Sbjct: 1   MSNK--NTDYTADSIQSLEGIEHIRLRPSMYIGDV-GIRGLHHLVCEVIDNSVDESLAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ +G  TV DNGRGIP D+HK+EG SA EV+MT++ AGGKF++ SYKVSGGL
Sbjct: 58  CNKIWVTIHKNGFITVLDNGRGIPIDIHKKEGKSALEVVMTKIGAGGKFDKNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+S VNALS  L + + R G IY+  ++ G   + +   G   +  GT++ +L  + 
Sbjct: 118 HGVGISCVNALSKRLIVTVYRNGKIYQQEYLRGTPIDRVQCLGET-HLQGTKIHYLADNS 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RL+EL+FLN  + + L D+R+    E   F K G++ ++S LD+++
Sbjct: 177 IFNSITYHYEILSTRLKELAFLNKGLHLFLKDERN--NIEEDFFSKNGLKEYLSILDKNQ 234

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L+++ I I+G +++  +++AM++N  + E +  + NNI   +GGTH+SG R ALTR  
Sbjct: 235 ESLIRNIIFIEGEKEDTIVEVAMQYNTSFKEKIYSYVNNINTSEGGTHISGFRRALTRTF 294

Query: 301 TSYVE---KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             Y +    +  +KKDK  + GDD REG T+++SI++ +P+F  QTK KL + EV  +V+
Sbjct: 295 KKYTDGLLSNKDNKKDKVDLTGDDFREGLTAIISIRVMEPQFEGQTKTKLSNHEVGGIVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V + L+++LEE+P E + I+ KV+ ++  R AA++AR+L ++K  +  + LPGKLADC
Sbjct: 355 KIVGEMLNSYLEENPSERRKIIDKVILSAKARQAAKKARELIQKKSPIYNSILPGKLADC 414

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S  +P+  E++LVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  +
Sbjct: 415 SFNNPENCEIYLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMQYKIFENEEIRNI 474

Query: 478 ITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
            T+LG  IG +      ++ KLRY+KIIIMTDAD+DG+HI TL+LT FFR M  LI  G 
Sbjct: 475 FTSLGVSIGTEEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGH 534

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFID 592
           +YI  PPLY I +G   QY   +E  E  L      ++I        G ++   L     
Sbjct: 535 IYIATPPLYLIRKGNHSQYAWSDEEREKILQRLGRRKKINIQRYKGLGEMNAEQLWET-- 592

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
               ++   +     H +   E   I  +   E
Sbjct: 593 ---TMNPKKRTLRKVHIENLSEADKIFSILMGE 622



 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFS-IGR-KGISMQRYKGLGEMNASQLWETTLNPDTR 760
             L LI  G+  +        + I   +GR K I++QRYKGLGEMNA QLWETT+NP  R
Sbjct: 540 PPLYLIRKGNHSQYAWSDEEREKILQRLGRRKKINIQRYKGLGEMNAEQLWETTMNPKKR 599

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +L +V I + S+AD +FS LMG+EV PRR FI++N++ + +D+
Sbjct: 600 TLRKVHIENLSEADKIFSILMGEEVPPRRSFIEKNAIHAKIDV 642


>gi|240047186|ref|YP_002960574.1| DNA gyrase subunit B [Mycoplasma conjunctivae HRC/581]
 gi|239984758|emb|CAT04732.1| DNA gyrase subunit B [Mycoplasma conjunctivae]
          Length = 640

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 253/592 (42%), Positives = 374/592 (63%), Gaps = 11/592 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A SIQ L+GL+ V+KRP MYIG T G   LHH+I+E++DNA+DE+L G+A+ I
Sbjct: 1   MSQKNYSASSIQTLEGLEPVRKRPGMYIGGT-GIQPLHHLIWEIVDNAVDEALAGFANQI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +  DG   VSDNGRGIPTD+H + G+SAAEV++T LHAGGKF+  SYKVSGGLHGVG
Sbjct: 60  DVVITKDGYVQVSDNGRGIPTDIHPKHGVSAAEVVLTILHAGGKFDGSSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIF 182
            SVVNALS  L++ IKR+G +Y   F + G   + L V  S + N TGT + F+P   I 
Sbjct: 120 ASVVNALSKHLQVWIKRDGKLYFQEFRDGGQKVDNLKVIDSVSENQTGTTIKFIPDFTIM 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +F  D +Q RL++ ++L   ++            + T  ++GGI  ++S L +  + 
Sbjct: 180 DKNEFRLDIIQDRLKQTAYLTKGLK--FTIDDQRTNFQKTFLFEGGIFDYISELSKGYEH 237

Query: 243 LMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +    I ++       ++I +++A+R+ +     +L +TNNI  ++GGTH +GL  AL+R
Sbjct: 238 VHDEIIYVEDELSHNENHIKVEVALRYVNEDRSELLSYTNNIYNREGGTHEAGLFDALSR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y  ++   K +      +D ++G  +V+SIK  DP F  QTK KL S EVR +   
Sbjct: 298 ILNNYAFENKFFKNENEKFSKEDIKDGLFAVISIKHSDPIFEGQTKGKLNSKEVRQITNK 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P +A+ I+++ L +   R AA  AR+  +RK   D++SLPGKLADCS
Sbjct: 358 VFSEVFERFLVENPEQARKIIERNLISQKARKAAESAREAVKRKSPFDVSSLPGKLADCS 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++ + +EL++VEG+SAGGSAK GR R  QAILPLRGK++N +R   +K+L ++EI +LI
Sbjct: 418 VKNAQMAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRTNLEKVLKNEEILSLI 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG   F+INK+RYHKIIIMTDAD DG+HIRTLLLTF +R    LI  G +YI +
Sbjct: 478 TAFGTGIG-PEFNINKVRYHKIIIMTDADSDGSHIRTLLLTFLYRYFRPLIEYGLIYIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PPLY I+  K + Y   ++  ++ +  +  + ++        G ++ + L  
Sbjct: 537 PPLYKISANKKVVYAYSDKQKDEIIAKEFENNKVTIQRYKGLGEMNPDQLWE 588



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +++QRYKGLGEMN  QLWETT++P TR + +V+I DA  A  +F  LMG+EV+PR+ FI+
Sbjct: 570 VTIQRYKGLGEMNPDQLWETTMDPTTRKMYQVQIHDAFIASQVFEALMGEEVQPRKVFIE 629

Query: 794 ENSLPS-ALDI 803
           EN+     LD+
Sbjct: 630 ENARYVKNLDV 640


>gi|223043343|ref|ZP_03613389.1| DNA gyrase, B subunit [Staphylococcus capitis SK14]
 gi|222443132|gb|EEE49231.1| DNA gyrase, B subunit [Staphylococcus capitis SK14]
          Length = 639

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 300/640 (46%), Positives = 416/640 (65%), Gaps = 5/640 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A+ I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  ANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +
Sbjct: 120 HGVGSSVVNALSQDLEVYVYRNDTIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKADGE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+    +NY+TLQ R+REL+FLN  +QI+L D+R  E RE +  Y+GGI+++V  L+ +
Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLRDEREEEGREDSYHYEGGIKSYVELLNEN 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+PL + PI I  ++D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 239 KEPLHEEPIYIHQTKDDIEVEIALQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRI 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY  +S   K+DK  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 299 LNSYGIQSKIIKEDKDKLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             +    +L EHP   +IIV+K + AS  R AA++AR++TRRK  LD++SLPGKLADCS 
Sbjct: 359 FAEYFERFLFEHPAVGRIIVEKGVMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++P++SE+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 419 KNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 479 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKID 598
           PLY +T+GK   YV ++  L+      + +           G ++ + L     +     
Sbjct: 538 PLYKLTQGKQKYYVFNDRELDKLKAELNPTPKWSISRYKGLGEMNADQLWETTMNPEHRS 597

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            L        D     + ++  V         + ++ + L
Sbjct: 598 MLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANL 637



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 24/183 (13%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690
             RL+ I   +E          G     DI   R  + V      ++G+ I +    +  
Sbjct: 461 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 520

Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRKGI------SMQRY 739
           R     IE  Y+ I       L     K  +      LD + +     +      S+ RY
Sbjct: 521 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE----LNPTPKWSISRY 575

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA QLWETT+NP+ RS+L+V++ DA  AD  F  LMGD VE RR+FI++N++ +
Sbjct: 576 KGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYA 635

Query: 800 ALD 802
            LD
Sbjct: 636 NLD 638


>gi|331270701|ref|YP_004397193.1| DNA gyrase subunit B [Clostridium botulinum BKT015925]
 gi|329127251|gb|AEB77196.1| DNA gyrase, B subunit [Clostridium botulinum BKT015925]
          Length = 635

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 297/635 (46%), Positives = 424/635 (66%), Gaps = 5/635 (0%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               YD   IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DN+IDE+L G+   I 
Sbjct: 3   NKQVYDESQIQVLEGLEAVRKRPGMYIGST-GIRGLHHLVYEIVDNSIDEALAGFCQNIK 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V ++ + S TV D+GRG+P  +H +      EVIMT LHAGGKF    YKVSGGLHGVG 
Sbjct: 62  VYIHKNNSVTVKDDGRGMPVGIHPKMKRPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS + K+ ++REG+++   +  G + + L V G +  + GT V F P  +IF   
Sbjct: 122 SVVNALSKYCKVEVRREGHVWMQEYKKGKVASELEVIGDSE-ERGTLVYFEPDDEIFEEV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+YDTL HRLREL+FLN   +I L+D+R  + +     Y+GGI++FVSYL+R+K+ L +
Sbjct: 181 EFDYDTLSHRLRELAFLNKGTRIILVDEREEKEQ--EFHYEGGIKSFVSYLNRNKQTLHE 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++G++D+  +++A+++ND Y++N+  F NNI   +GGTHL+G +SALTR +  Y  
Sbjct: 239 EPIYVEGNKDDYLVEVALQYNDTYNDNIFAFANNIDTIEGGTHLAGFKSALTRVLNDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           +    K+  +++ GDD REG T+V+S+K+ DP+F  QTK KL +SEVR +V+S V++ +S
Sbjct: 299 RYGYLKETDKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDSIVSERVS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P  AK +++K L A+  R+AA++AR+LTRRK VL+  +LPGKLADCS +DP + 
Sbjct: 359 EFLEENPDTAKTVIEKSLTAARAREAAKKARELTRRKSVLESTALPGKLADCSSKDPSEC 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+ R DK+L+S++I  +ITA G GI
Sbjct: 419 EIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIRAMITAFGAGI 478

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D FDI K+RYH+IIIMTDADVDGAHI TLLLTFF+R M  L+  G +YI +PPLY + 
Sbjct: 479 GKD-FDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVEGGHVYIAQPPLYQVK 537

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           RGK ++Y   +  L+  L      ++       KG+   +  + +        + +    
Sbjct: 538 RGKVIRYSYSDNELKQVLTELGGKDKNTEIQRYKGLGEMDATQLWDTTMNPEHRTLVKVT 597

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            +      E   I      E  +E     A K+ N
Sbjct: 598 IDDAMRADEVFTILMGDKVEPRREFIEENAKKVVN 632



 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 16/239 (6%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
               +   + +  I + D         +  +             +E+  +  + N E  +
Sbjct: 409 DCSSKDPSECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIR 468

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
            +  +  + +    +    +  +           ++      V    +      F +   
Sbjct: 469 AMITAFGAGIGKDFDIEKIRYHR-----------IIIMTDADVDGAHIATLLLTFFYRYM 517

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISMQRYKGLGEM 745
            + +    +       L  +  G  I+ +   + L  + +   G+ K   +QRYKGLGEM
Sbjct: 518 RELVEGGHVY-IAQPPLYQVKRGKVIRYSYSDNELKQVLTELGGKDKNTEIQRYKGLGEM 576

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           +A+QLW+TT+NP+ R+L++V I DA +AD++F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 577 DATQLWDTTMNPEHRTLVKVTIDDAMRADEVFTILMGDKVEPRREFIEENAKKVVNLDI 635


>gi|78707365|gb|ABB46488.1| DNA gyrase subunit B [Acholeplasma pleciae]
          Length = 587

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 278/580 (47%), Positives = 381/580 (65%), Gaps = 6/580 (1%)

Query: 24  VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83
           VKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD IT+ +       V+DNGRGI
Sbjct: 1   VKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALGGYADEITIEILKGEIIRVTDNGRGI 59

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143
           P D H + G  A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W  + I ++G
Sbjct: 60  PVDTHPKTGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEWFVVEIHKDG 119

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202
            IYE  +  GI    L   G   + +GT ++F     IF     +NY+TL+ R+++L+FL
Sbjct: 120 VIYEQKYERGIPAYDLKTLG-TTDRSGTVISFQSDPLIFKETVIYNYETLRTRIQQLAFL 178

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           N  ++++LID R  E +  +  Y+GGI  +V +L++ K  +    I I+  +D+I+I+LA
Sbjct: 179 NKGLKLNLIDDRFEEVKTESFHYEGGIIEYVKFLNQAKTRIHPDIIYIEKEQDDITIELA 238

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           +++ D Y  N+  FTNNI   +GG H  G + ALTR I+ Y ++         S+ G+D 
Sbjct: 239 LQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADELKMK--KDDSISGEDT 296

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+++S+K P+P+F  QTK KL + EVR++     ++ L  +L E+P +AK IV+KV
Sbjct: 297 REGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEALERFLMENPAQAKAIVEKV 356

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           L A+  R AAR+A+DLTRRK  LD      KLADC  +DP+KSE+++VEGDSAGGSAKQG
Sbjct: 357 LLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGSAKQG 416

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R  E QAI+PLRGK+LNVE+AR DKMLS++EI  LI A+GTGI  D FDI K RYHKI+I
Sbjct: 417 RDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGI-SDEFDITKARYHKIVI 475

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDGAHIRTLLLTF FR M  LI  G++Y  +PPLY ++ G++ +Y   E+ L   
Sbjct: 476 MTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNSEYAYTEQELNII 535

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           L        I+ +     + ++      +D A +    IK
Sbjct: 536 LKKIETKPNIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 575



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSL 707
            G  +  DI   R  + V      ++G+ I +    +  R     I+  Y+      L  
Sbjct: 457 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 516

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           +  G   +       L+ I        ++QRYKGLGEM+A QLW+TT++P  R+LL++K+
Sbjct: 517 VSWGRNSEYAYTEQELNIILKKIETKPNIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 576

Query: 768 TDASQADDLFS 778
            DA  AD +FS
Sbjct: 577 EDAIDADQVFS 587


>gi|297530088|ref|YP_003671363.1| DNA topoisomerase IV subunit beta [Geobacillus sp. C56-T3]
 gi|297253340|gb|ADI26786.1| DNA topoisomerase IV, B subunit [Geobacillus sp. C56-T3]
          Length = 645

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 262/601 (43%), Positives = 378/601 (62%), Gaps = 17/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L GY
Sbjct: 1   MAKR-ATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ D S TV D GRG+P  +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GNYILVQIHKDNSITVLDEGRGMPVGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G IY   F + G     L   G   N TGT + F P  
Sbjct: 118 HGVGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+TL  RLRE +FL   ++I L+D+R+         Y+ GIEAFV+YL+  
Sbjct: 177 TIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MREVFHYENGIEAFVAYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR 
Sbjct: 235 KDVLHP-VVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357
              Y  +    K+  +++ G D REG ++V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 294 FNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L  +L+E+P  + +++KK + A   R+AAR+AR+   + +K     A L GKL 
Sbjct: 354 AVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +L ++EI 
Sbjct: 414 PAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 474 TIIHAIGGGVGAD-FSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 532

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY I+    + + ++Y   +E L++          I+ +     + +       +
Sbjct: 533 IALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGRGYTIQRYKGLGEMNADQLWETTM 592

Query: 592 D 592
           +
Sbjct: 593 N 593



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   ++ I       +     N D ++           +    
Sbjct: 455 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK---GISMQ 737
             F +      I + ++      +  +     K +I       + +  I +K   G ++Q
Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGRGYTIQ 574

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP TR+L+RV+I DA++A+   + LMGD+VEPRR++I+ +
Sbjct: 575 RYKGLGEMNADQLWETTMNPQTRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETH 632


>gi|68535067|ref|YP_249772.1| DNA gyrase subunit B [Corynebacterium jeikeium K411]
 gi|68262666|emb|CAI36154.1| DNA gyrase subunit B [Corynebacterium jeikeium K411]
          Length = 674

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 271/653 (41%), Positives = 388/653 (59%), Gaps = 38/653 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++  + S Y A SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GY
Sbjct: 1   MAEPQKQSDYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  ++VTL  DG   V D+GRGIP + H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 60  AKEVSVTLLADGGVEVIDDGRGIPVEDHP-TGPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IKR+G ++  +F   +    L     A   TGT+  F P  +
Sbjct: 119 HGVGISVVNALSTRMETEIKRDGYLWRQNFNEAVP-EELQQVKKA-RGTGTKQRFWPDPE 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------------ 222
           IF   +FN+DT+  RL+E++FLN  + I L+D+R     +                    
Sbjct: 177 IFETVEFNFDTVAKRLQEMAFLNKGLTIKLVDERENLEDDEELEAAAEDAAAPKSTEEKA 236

Query: 223 -------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
                          Y  G++ +V+Y++R +  +  + I    + ++  +++A++WN G+
Sbjct: 237 AEAEKKKGPRTRVFHYPEGLKDYVAYINRKRTAIHPTIISFDVAEEDHEVEVALQWNSGF 296

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            ++V  F N I   +GGTH  G R+ALT  +  Y       K     + GDD REG  +V
Sbjct: 297 SQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYARDHKLLKAKDPKLSGDDVREGLAAV 356

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+++ DP+F  QTK KL ++E++  V+  VN+ L+ WL+ +P EAK IV K + ++  R
Sbjct: 357 ISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLADWLDANPAEAKAIVDKAVASAHAR 416

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           DAAR+ARD+ RRK   DI  LPGKLADC  RDPK SEL++VEGDSAGGSAK GR    QA
Sbjct: 417 DAARKARDMVRRKSASDIGGLPGKLADCRSRDPKLSELYIVEGDSAGGSAKSGRDSMYQA 476

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVD
Sbjct: 477 ILPLRGKILNVEKARMDKVLKNNEVQAIITALGTGI-HDEFDIKKLRYHKIVLMADADVD 535

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G HI TLLLT  FR M  L+  G++Y+ +PPLY +   K        +   D  + + L+
Sbjct: 536 GQHIATLLLTLLFRFMRPLVEEGYVYLAQPPLYKLKWAKGEPGFAFSDRERDEQLEEGLA 595

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           +  ++  D    I +      ++     +  +        +  +E A  +   
Sbjct: 596 KGRKINKDDG--IQRYKGLGEMNAKELWETTMDPTVRTLRRVDLEDAAAADEI 646



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 6/86 (6%)

Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L+   + GRK I+    +QRYKGLGEMNA +LWETT++P  R+L RV + DA+ AD++FS
Sbjct: 590 LEEGLAKGRK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRTLRRVDLEDAAAADEIFS 648

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMGD+V  RR FI +N+     LD+
Sbjct: 649 VLMGDDVVARRSFITKNARDVRFLDV 674


>gi|297558991|ref|YP_003677965.1| DNA gyrase subunit beta [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843439|gb|ADH65459.1| DNA gyrase, B subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 645

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 271/545 (49%), Positives = 370/545 (67%), Gaps = 7/545 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YDA SI +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I VTL
Sbjct: 2   AYDAGSITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADAIEVTL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V+DNGRGIPTDLH  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVSVV
Sbjct: 61  LADGGVCVADNGRGIPTDLHPVEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L++ I+  G+++   +        L V G + ++TGT++TF P  DIF    F+
Sbjct: 121 NALSTALEVEIRLHGHVWRQRYEMTAPTGEL-VKGESTDETGTQITFWPDGDIFETTTFS 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLDRHKKPLM 244
           ++TL  R++E++FLN  + I++ D+R       P   T  Y  G+  +V +++  K+P  
Sbjct: 180 FETLARRMQEMAFLNKGLSITIRDERPEHTDGGPTVNTFHYDEGLSDYVRHINAKKEPAH 239

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            S I  +   + IS+++AM+WN  Y  +V  F N I   +GGTH  G RSALT  +  Y 
Sbjct: 240 ASIISFEEEGEGISVEIAMQWNQSYTSSVHTFANTINTAEGGTHEEGFRSALTTLVNRYA 299

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 ++   ++ GDD REG T+++S+K+ DP+F  QTK KL ++E +S V+   N+ L
Sbjct: 300 RDQKLLREKDDNLTGDDIREGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHL 359

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             W E +P EAK IV K   A+  R AAR+ARDLTRRK +L+  SLPGKL+DC   +P++
Sbjct: 360 RDWFERNPGEAKDIVSKASQAARARVAARQARDLTRRKTLLETTSLPGKLSDCQSTNPEE 419

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E+++VEGDSAGGSAK GR+  NQAILP+RGKILNVE++R D++L + E+  +ITALGTG
Sbjct: 420 CEVYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEKSRIDRILKNAEVQAIITALGTG 479

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I ++ FD  KLRYHK+I+M DADVDG HIRTLLLT  FR M  L+  G +Y+  PPLY I
Sbjct: 480 IHEE-FDAEKLRYHKVILMADADVDGQHIRTLLLTLLFRFMKPLVEAGNVYLAAPPLYKI 538

Query: 545 TRGKS 549
              + 
Sbjct: 539 KWDQK 543



 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMNA++LW+TT++PD R LL+V + DA+QAD+LFS LMG++VE RR FIQ N
Sbjct: 577 VQRFKGLGEMNANELWDTTMDPDRRVLLQVSLEDAAQADELFSVLMGEDVESRRAFIQRN 636

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 637 AKDVRFLDI 645


>gi|241889819|ref|ZP_04777117.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379]
 gi|241863441|gb|EER67825.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379]
          Length = 638

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 288/591 (48%), Positives = 393/591 (66%), Gaps = 7/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +N +   Y+AD IQ+L+GL+AV+ RP MYIG T    GLHH+++E++DN+IDE+L GY
Sbjct: 1   MVENKKTQEYNADQIQVLEGLEAVRVRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + ITV +       V DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  CNTITVAIEEGNWIRVEDNGRGIPVDIQEQTGKPALEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ L+  + R+G IY M F  G +   + V G   + TGT + F    +
Sbjct: 120 HGVGASVVNALSTNLEASVHRDGKIYSMKFERGDVVQGITVIGDT-DRTGTTIRFKADPE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     + YD L+ R+REL+FLN  + I L D+R  + +E T  Y+GG+  +V  L+ +
Sbjct: 179 IFQETTVYEYDILRTRIRELAFLNKGITIILKDERIGQEKEETFCYEGGLLEYVEMLNEN 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    I + G  D   ++++M++N GY  NVL + NNI   +GGTH SG ++ALTR 
Sbjct: 239 KDALH-EAIYVHGEMDGKEVEISMQYNTGYSNNVLSYANNINTHEGGTHESGFKTALTRI 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY +K+    KDK S+ GDD REG  +++SIK P+P+F  QTK KL +SE+ ++    
Sbjct: 298 INSYGKKNK-LIKDKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKL 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++ L  +L E+P  AKIIV+K L AS  R AA++AR+ TRRK  L+  +LPGKLADCS 
Sbjct: 357 FSEELDRFLLENPKTAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPGKLADCSS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  + ELFLVEGDSAGGSAK GR+ + QAILPL+GKILNVE+ R DK+L++ E+ +LIT
Sbjct: 417 KDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLANDEVRSLIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG+   +I+KLRYHKI+IMTDADVDG+HIRTLLLTFFFR M  LI  G++YI +P
Sbjct: 477 AIGMGIGETL-NIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYVYIARP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PLYG+  GK   Y   EE L+  +   +  ++         G ++  +L +
Sbjct: 536 PLYGLKVGKKEFYCHTEEELKQNIEEHAGDKKYTVQRYKGLGEMNAEELWD 586



 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 2/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    ++ + +  I     ++ +        +V      V    +    
Sbjct: 454 ILNVEKVRIDKVLANDEVRSLITAIGMGIGETLNIDKLRYHKIVIMTDADVDGSHIRTLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQRY 739
             F F    + I +  +      +  L     +        L   I    G K  ++QRY
Sbjct: 514 LTFFFRYMRELIDAGYVYIARPPLYGLKVGKKEFYCHTEEELKQNIEEHAGDKKYTVQRY 573

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA +LW+TT++P+ R + +V + DA +AD  F  LMG++VEPRR+FI++N+L  
Sbjct: 574 KGLGEMNAEELWDTTMDPEHRLMYQVSVNDAQRADAAFDTLMGEKVEPRRKFIEDNALNV 633

Query: 800 -ALDI 803
             LDI
Sbjct: 634 INLDI 638


>gi|326789144|ref|YP_004306965.1| DNA gyrase subunit beta [Clostridium lentocellum DSM 5427]
 gi|326539908|gb|ADZ81767.1| DNA gyrase, B subunit [Clostridium lentocellum DSM 5427]
          Length = 634

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 287/583 (49%), Positives = 386/583 (66%), Gaps = 4/583 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YD + IQIL+GL AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+   I VT
Sbjct: 3   ATYDENQIQILEGLQAVRKRPGMYIGSTSS-KGLHHLVYEIVDNAVDEALAGFCSFIKVT 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D + +V DNGRGIP  +H ++GIS  EV+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 62  IHADNTISVIDNGRGIPVGIHPQKGISTVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WL + +  +G +++  F  G +  PL V G      GT V F P ++IF    F
Sbjct: 122 VNALSEWLTVEVYTDGKVHQEKFSRGDVVQPLTVIGDTNKV-GTYVRFKPDTEIFEEVIF 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +Y  L+ RL+E +FL  +++I L+D+R  + +  T  Y+GGI+ FV +L++HK P+    
Sbjct: 181 DYKVLEQRLKETAFLTKALKIQLVDEREGQEQNKTFHYEGGIKEFVQHLNKHKTPIYDEI 240

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
              +G +D I++++A + ND Y EN+  F NNI   +GGTHLSG R+A+T+ +  Y  K 
Sbjct: 241 FYCEGEKDGIAVEVAFQHNDSYVENLFSFVNNINTPEGGTHLSGFRTAITKNLNDYARKM 300

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K   +++ GDD REG T+V+SIK+ DP+F  QTK KL SSE    V+S   D L+ +
Sbjct: 301 GLLKDSDKNLTGDDIREGMTAVISIKIGDPQFEGQTKTKLGSSEAAGAVQSVFGDQLTYF 360

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LE++P   K+IV+K + A+  RDAAR+AR+LTRRK  L+  +LPGKLADCSE+D  K E+
Sbjct: 361 LEQNPNVGKVIVQKGVMAARARDAARKARELTRRKSALEGNALPGKLADCSEKDASKCEI 420

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAK  RS + QAILPLRGKILNVE+ R DKML +QEI  +ITA G GI  
Sbjct: 421 YIVEGDSAGGSAKSARSPKTQAILPLRGKILNVEKVRIDKMLENQEIRNMITAFGAGI-S 479

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D FDI+KLRY KII+MTDADVDGAHIRTLLLTF +R    LI    +YI +PPLY + + 
Sbjct: 480 DDFDISKLRYGKIILMTDADVDGAHIRTLLLTFLYRYYRELIEQDHVYIAQPPLYLVEKN 539

Query: 548 KSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           K   Y  D++ LE  L     +           G ++   L  
Sbjct: 540 KKKHYAFDDKELEKLLEEVGRTGITRMQRYKGLGEMNAEQLWE 582



 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 4/127 (3%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-LLDTIFSI-GRKGIS-MQ 737
            + +F  +Y R    +           +   +K K        L+ +    GR GI+ MQ
Sbjct: 508 LLLTFLYRYYRELIEQDHVYIAQPPLYLVEKNKKKHYAFDDKELEKLLEEVGRTGITRMQ 567

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMNA QLWETT++P++R L++V I DA+ AD++F++LMGD+VEPRR+FI E++ 
Sbjct: 568 RYKGLGEMNAEQLWETTMDPESRVLVKVNIDDAAAADEIFTKLMGDDVEPRRQFINEHAH 627

Query: 798 PSA-LDI 803
               LDI
Sbjct: 628 KVTYLDI 634


>gi|297810505|ref|XP_002873136.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318973|gb|EFH49395.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 729

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 264/597 (44%), Positives = 370/597 (61%), Gaps = 12/597 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   +  Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  G+A 
Sbjct: 81  ETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGST-GPRGLHHLVYEILDNAIDEAQAGFAS 139

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120
            + V L+ DGS +V DNGRGIPTDLH     S+ E ++T LHAGGKF   S  Y VSGGL
Sbjct: 140 KVDVVLHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGL 199

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ + R+G  ++ ++  G     L     T  +    GT + F P
Sbjct: 200 HGVGLSVVNALSEALEVTVWRDGMEHKQNYSRGKPITTLTCRVLTLESERTKGTSIRFWP 259

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFVS 234
             ++F+   +F+++T+  R+REL+FLN  V ISL  +     + +    ++ GG+  +VS
Sbjct: 260 DKEVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKNQYSEYYFAGGLTEYVS 319

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+  K P+       +   +  ++D+A++W  D Y + +L + N+I   DGGTH+ G++
Sbjct: 320 WLNTDKNPIHDVLG-FRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 378

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR + +  +KS   K+   S+ G+  REG T ++S+K+P+P F  QTK +L + EVR
Sbjct: 379 ASLTRTLNALAKKSKTVKEKDISLSGEHVREGLTCIVSVKIPNPEFEGQTKTRLGNPEVR 438

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V+  V + L+ +LE HP   + IV K L+A     AA+RAR+L R K VL  +SLPGK
Sbjct: 439 KIVDQSVQEYLTEFLELHPDVLESIVSKSLNAYKAALAAKRARELVRSKSVLKSSSLPGK 498

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  DP+ SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  ++E
Sbjct: 499 LADCSSTDPEASEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEE 558

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  LI  LG G+  + F    LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L   G 
Sbjct: 559 IQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGC 618

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +Y+  PPL+ + RGK   Y  D+  L+    N   +           G +    L  
Sbjct: 619 IYVGVPPLFKVERGKHAHYCYDDADLKKITSNFPANASYNIQRFKGLGEMMPEQLWE 675



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 9/190 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           + N E   E  +    ++ N +  +    K E     ++    I++      V    +  
Sbjct: 542 ILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIIIL-TDADVDGAHIRT 600

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736
               F F  +     +  I      +  +               L  I S        ++
Sbjct: 601 LLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKHAHYCYDDAD-LKKITSNFPANASYNI 659

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QR+KGLGEM   QLWETT+NP+TR L ++ + D ++A+  FS LMG  V+ R+E I+  +
Sbjct: 660 QRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELIKNAA 719

Query: 797 LPSA---LDI 803
                  LDI
Sbjct: 720 TRINLQRLDI 729


>gi|261419951|ref|YP_003253633.1| DNA topoisomerase IV subunit B [Geobacillus sp. Y412MC61]
 gi|319766765|ref|YP_004132266.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC52]
 gi|261376408|gb|ACX79151.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC61]
 gi|317111631|gb|ADU94123.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC52]
          Length = 645

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/656 (40%), Positives = 392/656 (59%), Gaps = 23/656 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L GY
Sbjct: 1   MAKR-ATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ D S TV D GRG+P  +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GNYILVQIHKDNSITVLDEGRGMPVGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G IY   F + G     L   G   N TGT + F P  
Sbjct: 118 HGVGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+TL  RLRE +FL   ++I L+D+R+         Y+ GIEAFV+YL+  
Sbjct: 177 TIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MREVFHYENGIEAFVAYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR 
Sbjct: 235 KDVLHP-VVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357
              Y  +    K+  +++ G D REG ++V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 294 FNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L  +L+E+P  + +++KK + A   R+AAR+AR+   + +K     A L GKL 
Sbjct: 354 AVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +L ++EI 
Sbjct: 414 PAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 474 TIIHAIGGGVGAD-FSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 532

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY I+    + + ++Y   +E L++ +        I+ +    G ++ + L    
Sbjct: 533 IALPPLYKISKKSGKNEIVEYAWTDEQLKEIMKKMGRGYTIQRY-KGLGEMNADQLWET- 590

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                ++   +       +              +  +     + + +A  L    E
Sbjct: 591 ----TMNPQTRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETHVAFGLEEEPE 642



 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   ++ I       +     N D ++           +    
Sbjct: 455 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K +I         L  I     +G ++Q
Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEIMKKMGRGYTIQ 574

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP TR+L+RV+I DA++A+   + LMGD+VEPRR++I+ +
Sbjct: 575 RYKGLGEMNADQLWETTMNPQTRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETH 632


>gi|56420286|ref|YP_147604.1| DNA topoisomerase IV subunit B [Geobacillus kaustophilus HTA426]
 gi|56380128|dbj|BAD76036.1| DNA topoisomerase IV subunit B [Geobacillus kaustophilus HTA426]
          Length = 645

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 262/601 (43%), Positives = 379/601 (63%), Gaps = 17/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ +     Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L GY
Sbjct: 1   MAKH-ATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ D S TV D GRG+P  +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GNYIFVQIHKDNSITVLDEGRGMPVGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G IY   F + G     L   G   N TGT + F P  
Sbjct: 118 HGVGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+TL  RLRE +FL   ++I L+D+R+         Y+ GIEAFV+YL+  
Sbjct: 177 TIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MREVFHYENGIEAFVAYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR 
Sbjct: 235 KDVLHP-VVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357
              Y  +    K+  +++ G D REG ++V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 294 FNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L  +L+E+P  + +++KK + A   R+AAR+AR+   + +K     A L GKL 
Sbjct: 354 AVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +L ++EI 
Sbjct: 414 PAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 474 TIIHAIGGGVGAD-FSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 532

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY I+    + + ++Y   +E L++          I+ +     + +       +
Sbjct: 533 IALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGRGYTIQRYKGLGEMNADQLWETTM 592

Query: 592 D 592
           +
Sbjct: 593 N 593



 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   ++ I       +     N D ++           +    
Sbjct: 455 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK---GISMQ 737
             F +      I + ++      +  +     K +I       + +  I +K   G ++Q
Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGRGYTIQ 574

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP TR+L+RV+I DA++A+   + LMGD+VEPRR++I+ +
Sbjct: 575 RYKGLGEMNADQLWETTMNPQTRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETH 632


>gi|292558800|gb|ADE31801.1| DNA gyrase, B subunit [Streptococcus suis GZ1]
          Length = 650

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 279/628 (44%), Positives = 403/628 (64%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++ I++       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + + G +Y   +  G +   L V G   + +GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++  L  R++EL+FLN  + +S+ DKR    +     Y+GGI ++V 
Sbjct: 179 TPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKEYHYEGGIASYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K  + ++PI  +G  D+I++++AM++   YHENV+ F NNI   +GGTH  G R+
Sbjct: 239 YLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     +D  + +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D  K+ELF+VEGDSAGGSAK GR R+ QAILP+RGKILNV++A  DK+L+++EI
Sbjct: 419 ADCSSNDAAKTELFIVEGDSAGGSAKSGRDRKFQAILPIRGKILNVKKASMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YGI  G  ++     +   +       + E      SK  I +      +DD 
Sbjct: 538 YIAQPPIYGIKVGSEIKEYI--QPGVNQEQELQDALERHSTGRSKPTIQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMNPENRLMARVSVDDAAEADKI 623



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 2/85 (2%)

Query: 721 SLLDTIF--SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            L D +   S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F 
Sbjct: 566 ELQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIFD 625

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
            LMGD+VEPRREFI+EN++ S LD+
Sbjct: 626 MLMGDKVEPRREFIEENAVYSTLDV 650


>gi|289433379|ref|YP_003463251.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169623|emb|CBH26157.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 646

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 289/597 (48%), Positives = 402/597 (67%), Gaps = 11/597 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS++L++ + REG  Y   F  G +   +   G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTYLEVYVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IFS    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFSETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S+ +   ++ L+ ++ E+P  AK IV+K + AS  R AA+RAR++ R+   L+I+SLPGK
Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P+ SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++L+++E
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+ TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G+
Sbjct: 479 IRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +YI +PPLY I  GK ++YV  +  LEDYL +     +         G ++   L +
Sbjct: 538 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKDTKYGIQRYKGLGEMNPEQLWD 594



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 7/219 (3%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           +  + QA++     + N E  +   +    ++      +  
Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 488

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +  S +    L+      V    +        +      + +  I       L  
Sbjct: 489 GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIY-IAQPPLYQ 547

Query: 708 ICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           I +G +I+ +     L D + S+ +     +QRYKGLGEMN  QLW+TT+NP+ R+LL+V
Sbjct: 548 IKHGKQIEYVYSDGQLEDYLASLDKDTKYGIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 607

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            I DA  AD+ F  LMGD VEPRR+FI+EN+     LD+
Sbjct: 608 NIKDAIDADETFEMLMGDRVEPRRKFIEENAQYVKNLDV 646


>gi|283768639|ref|ZP_06341551.1| DNA gyrase, B subunit [Bulleidia extructa W1219]
 gi|283105031|gb|EFC06403.1| DNA gyrase, B subunit [Bulleidia extructa W1219]
          Length = 659

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 259/595 (43%), Positives = 391/595 (65%), Gaps = 8/595 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D   + +Y+ + IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN IDE++ GYA 
Sbjct: 20  DMKVDHAYEDEDIQVLEGLEAVRKRPGMYIGSTSSV-GLHHLVWEIVDNGIDEAMAGYAS 78

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + +T++ D   +V D+GRG+PT ++++ GIS  E I T LHAGGKF   +YKVSGGLHG
Sbjct: 79  QVEITVDEDNIVSVEDDGRGMPTGMNEKTGISTIETIFTVLHAGGKFGGGAYKVSGGLHG 138

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG-NDTGTEVTFLPSSD 180
           VG S VNALS +L++ +  EG++Y + F N G    PL V G+   +  G+ V F     
Sbjct: 139 VGASAVNALSEFLEVTVYHEGSVYFVRFENGGHPVEPLKVIGTCDVDKHGSLVRFKADPT 198

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLI--DKRSPEPREITMFYKGGIEAFVSYLD 237
           IF+    ++++ L++R+R+L+FLN  ++I      + + E R+   F++GG++ +V +++
Sbjct: 199 IFTETTVYDFNILRNRIRQLAFLNKGIRIKFHDLREVNFEKRDHDYFFEGGLKEYVKFIN 258

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + +  I  +G  DNI +++A ++N  Y+ ++  F NNI   DGGTH  G R ALT
Sbjct: 259 ENKDKVHEDVIYSEGYEDNIQVEVACQYNTSYNPSIYTFCNNITTVDGGTHEEGFRMALT 318

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +  Y  ++   K+   +V  +DC+EG T+++S+K PDP++ SQTK KL +SEVR +V 
Sbjct: 319 RIVNKYARENNFLKEKDENVTQEDCKEGLTAIISVKHPDPQYISQTKSKLTNSEVRKIVS 378

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
                    +L E+P +AK I++K++ AS  R AA+RA+++T RK  + + SLPGKL+DC
Sbjct: 379 DIFGTQFERFLMENPNQAKAIMEKIVIASQARLAAKRAKEIT-RKSSIKVGSLPGKLSDC 437

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +DP  SE++LVEGDSAGGSAK GR    QAILPLRGKILNVE+ R +K   +QEI ++
Sbjct: 438 SSKDPSISEIYLVEGDSAGGSAKNGRDSHFQAILPLRGKILNVEKTRPEKAFENQEIRSM 497

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITA G G+ QD  D +KLRYHKI+IMTDADVDGAHIRTLLLTFF+R +  ++  G++YI 
Sbjct: 498 ITAFGAGV-QDEVDTSKLRYHKIVIMTDADVDGAHIRTLLLTFFYRFLRPVLEQGYVYIA 556

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           +PPL+ + +G+S++Y   +  LE+          I+ +     + +       +D
Sbjct: 557 QPPLFKVQKGQSVRYAYTDRQLEELKAEMGERLSIQRYKGLGEMDASQLWETTMD 611



 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 67/103 (65%), Gaps = 3/103 (2%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
             L  +  G  ++       L+ + +  G + +S+QRYKGLGEM+ASQLWETT++P +R+
Sbjct: 558 PPLFKVQKGQSVRYAYTDRQLEELKAEMGER-LSIQRYKGLGEMDASQLWETTMDPKSRT 616

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L+RV I DA  AD  FS LMG+EVEPR+ FI EN+     LDI
Sbjct: 617 LIRVTIEDAEYADQNFSMLMGEEVEPRKNFILENAHFVENLDI 659


>gi|260437693|ref|ZP_05791509.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809919|gb|EFF69124.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876]
          Length = 638

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 288/587 (49%), Positives = 399/587 (67%), Gaps = 5/587 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MSDAGYTADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSVDEALAGFCTEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +N D S TV DNGRGIP  ++ + G+   EV+ T LHAGGKF    YKVSGGLHGVG
Sbjct: 60  FVQINEDNSITVIDNGRGIPVGINAKSGLPGVEVVFTILHAGGKFGGGGYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183
            SVVNALS WL++++ + GNIYE  +  G +  PL + GS     TGTEV FLP  +IF 
Sbjct: 120 ASVVNALSEWLEVKVFQNGNIYEQRYERGKVMYPLKIVGSCDMEKTGTEVHFLPDKEIFE 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              ++Y+ L+ RLRE++FL  +++I+L D R  +  ++   Y+GGI+ +V YL++  + L
Sbjct: 180 DTVYDYNVLKQRLREMAFLTKNLRITLKDDREDKKEKV-FHYEGGIKEYVEYLNKGNQAL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I  +G+++ +++++A + NDGY +NV  F NNI   +GGTH++G R+A+T+    Y
Sbjct: 239 YDEIIYCEGNKNGVNVEVAFQHNDGYSDNVYGFVNNITTPEGGTHVTGFRNAVTKTFNDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
              +   K+   S+ G+D REG T+++SIK+ DP+F  QTK+KL +SE R  VES V + 
Sbjct: 299 ARSNKILKEKDPSLSGEDIREGLTAIISIKIADPQFEGQTKQKLGNSEARGAVESVVTEQ 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +LE++P  AK I +K + A   R+AAR+ARDLTRRK  LD  +LPGKLADCS+++ +
Sbjct: 359 LTYFLEQNPSVAKTICEKSVLAQRAREAARKARDLTRRKTALDGFNLPGKLADCSDKNSE 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             E+F+VEGDSAGGSAK  R RE QAILPLRGKILNVE+AR D++L + EI T+ITA GT
Sbjct: 419 NCEIFIVEGDSAGGSAKSARKRETQAILPLRGKILNVEKARLDRILGNAEIRTMITAFGT 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI +D FDI+KLRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI  G +Y+ +PPLY 
Sbjct: 479 GIHED-FDISKLRYNKIIIMTDADVDGAHISTLLLTFFYRFMPDLIKKGHVYLAQPPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + + K + Y   +E L   L      +          G +  + L  
Sbjct: 538 LEKNKKVWYAYSDEELSAILAEVGRDQNNKIQRYKGLGEMDASQLWE 584



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 5/106 (4%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760
             L  +    K+        L  I +   +  +  +QRYKGLGEM+ASQLWETT++P+ R
Sbjct: 533 PPLYKLEKNKKVWYAYSDEELSAILAEVGRDQNNKIQRYKGLGEMDASQLWETTMDPEHR 592

Query: 761 SLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            L +V   +    + D  FS LMGD+VEPRREFI+ N+     LDI
Sbjct: 593 ILKKVYFDEEISSEIDLTFSTLMGDKVEPRREFIETNAKYVKNLDI 638


>gi|229826860|ref|ZP_04452929.1| hypothetical protein GCWU000182_02244 [Abiotrophia defectiva ATCC
           49176]
 gi|229788478|gb|EEP24592.1| hypothetical protein GCWU000182_02244 [Abiotrophia defectiva ATCC
           49176]
          Length = 636

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 278/584 (47%), Positives = 387/584 (66%), Gaps = 4/584 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L G    I V
Sbjct: 2   SAEYGADQIQILEGLEAVRKRPGMYIGSTS-LKGLHHLVYEIVDNSVDEALAGECSHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N D S TV D+GRGIP  ++ + G+ A +V+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  FINEDNSITVVDDGRGIPVGINSKSGLPAVQVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS WL++ ++ +G  Y+  +  G +   L   G      GT VTFLP  DIF    
Sbjct: 121 VVNALSEWLEVLVETDGKAYKQRYERGKVITELTEIG-TTERHGTTVTFLPDKDIFEETV 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y T++HRLRE++FL   ++ISL D+R    +  +  Y+GGI  +VSYL++++  L   
Sbjct: 180 FEYSTIKHRLREMAFLTKGLRISLTDRREEGKKTDSFHYEGGIMEYVSYLNKNQTVLYDK 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G +  + +++A++ NDGY+E    F NNI   +GGTHL+G R+A+T+    Y + 
Sbjct: 240 IIYCEGKKGTVQVEVALQHNDGYNEGCYSFVNNINTPEGGTHLTGFRNAITKTFNEYAKI 299

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K    ++ G+D REG T+++SIK+P+P+F  QTK+KL +SE R  VE+  ++ +  
Sbjct: 300 MKLVKDSDPALTGEDIREGMTAIVSIKIPEPQFEGQTKQKLGNSEARGAVETIASEQIMI 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LE++P   K+IV+K L A   RDAAR+ARDLTRRK  L+  +LPGKLADCS+++P   E
Sbjct: 360 FLEQNPAVGKMIVEKALLAQRARDAARKARDLTRRKTALEYMNLPGKLADCSDKNPDNCE 419

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++LVEGDSAGGSAK  R R  QAILPLRGKILNVE++R DK+L ++EI ++ITA GTGI 
Sbjct: 420 IYLVEGDSAGGSAKDARDRATQAILPLRGKILNVEKSRLDKILENKEIQSMITAFGTGI- 478

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D FDI+KLRY KIIIMTDAD+DGAHI TL+LTF +R MP LI  G +Y+ +PPLY + +
Sbjct: 479 HDDFDISKLRYKKIIIMTDADIDGAHIDTLMLTFIYRFMPELIKQGHVYLAQPPLYKVEK 538

Query: 547 GKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           G  + Y  +++ LE+ +                 G +    L  
Sbjct: 539 GNKIWYAYNDKELENIMSEIGRDSNNKIQRYKGLGEMDAEQLWE 582



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 5/106 (4%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760
             L  +  G+KI        L+ I S   +  +  +QRYKGLGEM+A QLWETT++P+ R
Sbjct: 531 PPLYKVEKGNKIWYAYNDKELENIMSEIGRDSNNKIQRYKGLGEMDAEQLWETTMDPERR 590

Query: 761 SLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LL+V + +  AS+ D  F+ LMGD+VEPRREFI++N+     LDI
Sbjct: 591 VLLKVMMDEENASEIDLTFNTLMGDKVEPRREFIEQNAKYVRNLDI 636


>gi|187934052|ref|YP_001884271.1| DNA gyrase subunit B [Clostridium botulinum B str. Eklund 17B]
 gi|187722205|gb|ACD23426.1| DNA gyrase, B subunit [Clostridium botulinum B str. Eklund 17B]
          Length = 635

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 299/641 (46%), Positives = 423/641 (65%), Gaps = 9/641 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N  YD + IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY   
Sbjct: 2   EQNNQKYDENQIQVLEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNSIDEALAGYCKN 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +N D S T SD+GRG+P  +H +   SA EVIMT LHAGGKF    YKVSGGLHGV
Sbjct: 61  IEVKINKDNSITSSDDGRGMPVGMHPKMHKSAVEVIMTILHAGGKFGGGGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS    + +KREG+I++  +  G +   L   G+   ++GT + F P ++IF 
Sbjct: 121 GASVVNALSEQCIVTVKREGHIWKQEYSKGKVLYDLKQIGNTE-ESGTTIYFKPDAEIFD 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++DTL  RLREL+FLN  + I LID R+   RE   +Y+GGI++FVSYL+R+K PL
Sbjct: 180 EVLFDFDTLSQRLRELAFLNKGINIKLIDSRND--REENYYYEGGIKSFVSYLNRNKTPL 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI ++G +D ++++L +++NDGY EN+  F NNI   +GGTHL G ++ALTR    Y
Sbjct: 238 HPEPIYVEGIKDKVTVELGLQYNDGYTENLFSFANNIDTIEGGTHLVGFKTALTRAFNDY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++    K++ ++  GDD REG T+V+S+K+ DP+F  QTK KL +SEV+ +V+S V++ 
Sbjct: 298 AKRFGFIKENDKNFSGDDIREGLTAVISVKIEDPQFEGQTKTKLGNSEVKGIVDSIVSEY 357

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +  +LEE+P  +KII+ K L A+  R+AAR+AR+LT RK VL+  +LPGKLADCS +DP+
Sbjct: 358 IGIFLEENPGISKIIIDKALMAARAREAARKARELT-RKSVLERTTLPGKLADCSSKDPR 416

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L+S+ I +++TA G 
Sbjct: 417 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILNSETIRSMVTAFGG 476

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG+D FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPL+ 
Sbjct: 477 GIGKD-FDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYIAQPPLFR 535

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK   Y   +  L+  L++    +        KG+   N  + +      +D   + 
Sbjct: 536 VGKGKKEVYAYSDSELDQVLLDMGGKDTSVDIQRYKGLGEMNATQLW---DTTMDPAKRI 592

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                 +  +    I  +   E  +     +     N +N 
Sbjct: 593 LLKAEIEDAMAADEIFTILMGEKVEPRREFIEQNAKNVVNL 633



 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 5/128 (3%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKGIS--M 736
            + +F  +Y R    +                K ++       L   +  +G K  S  +
Sbjct: 508 LLLTFFYRYMRELVEQGHVYIAQPPLFRVGKGKKEVYAYSDSELDQVLLDMGGKDTSVDI 567

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA+QLW+TT++P  R LL+ +I DA  AD++F+ LMG++VEPRREFI++N+
Sbjct: 568 QRYKGLGEMNATQLWDTTMDPAKRILLKAEIEDAMAADEIFTILMGEKVEPRREFIEQNA 627

Query: 797 LP-SALDI 803
                LDI
Sbjct: 628 KNVVNLDI 635


>gi|76562223|gb|ABA44807.1| DNA gyrase, B subunit [Streptococcus agalactiae A909]
          Length = 643

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 271/620 (43%), Positives = 402/620 (64%), Gaps = 6/620 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 2   EQRAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFAGH 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 61  IKVYIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L +++ + G ++   +  G++ N L + G   + +GT V F P  +IF+
Sbjct: 121 GSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFT 179

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R++EL+FLN  ++IS+ DKR  +  E    Y+GGI ++V +++ +K+ 
Sbjct: 180 ETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKEYHYEGGIGSYVEFINENKEV 239

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  D IS+++AM++  GY E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 240 IFENPIYTDGELDGISVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVIND 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 300 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             + +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  + 
Sbjct: 360 AFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNA 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 420 EMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 479

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K+RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 480 TGFGAD-FDVSKVRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 538

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+ +  S      +  +         + +      SK  + +      +DD    +  + 
Sbjct: 539 GV-KVGSEIKAYIQPGVNQ-EEELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMD 596

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  ++ A  +   
Sbjct: 597 PENRLMARVSVDDAAEADKI 616



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I + I  G   +       LDT +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 541 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHQLWETTMDPE 598

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+ N++ S LDI
Sbjct: 599 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEANAVYSNLDI 643


>gi|239827049|ref|YP_002949673.1| DNA topoisomerase IV subunit B [Geobacillus sp. WCH70]
 gi|239807342|gb|ACS24407.1| DNA topoisomerase IV, B subunit [Geobacillus sp. WCH70]
          Length = 656

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 264/601 (43%), Positives = 381/601 (63%), Gaps = 17/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV++RP MYIG TD   GLHH++YE++DN++DE+L GY
Sbjct: 1   MTKQSV-YEYNDDAIQVLEGLEAVRRRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ D S TV D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GNYILVKIHKDNSITVLDEGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G IY+  F + G     L   G   N TGT + F P  
Sbjct: 118 HGVGASVVNALSEWLVVTIHRDGFIYQQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   FNY+TL  RLRE +FL   ++I LID+R+        +Y+ GIEAFV YL+  
Sbjct: 177 TIFSTTTFNYETLSERLRESAFLLKGLKIELIDERTG--MRDVFYYENGIEAFVEYLNED 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +  +G ++ I ++ A ++NDGY ENVL F NN+  KDGGTH +G ++A+TR 
Sbjct: 235 KDVLHP-VVYFEGEQNGIEVEFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 294 FNEYARKMGLLKEKDKNLEGSDIREGLSAIISVRIPEHLLQFEGQTKGKLGTSEARSAVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +L+E+P  + +++KK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 354 AVVSEHLTYFLQENPDISTMLIKKAIRAYQAREAARKAREEARSGKKRKGKETVLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +L ++EI 
Sbjct: 414 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADILKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G   F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 474 TIIHAIGGGVG-PDFSLDDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 532

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY I+    + + ++Y   +E L++ +        I+ +     + +       +
Sbjct: 533 IALPPLYKISKGTGKKEIIEYAWTDEQLKEIVKKFGKGYTIQRYKGLGEMNADQLWETTM 592

Query: 592 D 592
           +
Sbjct: 593 N 593



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   ++ I       +     N D ++           +    
Sbjct: 455 VINTEKAKLADILKNEEINTIIHAIGGGVGPDFSLDDINYDKVIIMTDADTDGAHIQVLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSLLDTIFSIGRKGISM 736
             F +      I + ++      +  +     K +I         L + +   G KG ++
Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKISKGTGKKEIIEYAWTDEQLKEIVKKFG-KGYTI 573

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QRYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 QRYKGLGEMNADQLWETTMNPETRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIEAN 632


>gi|46199524|ref|YP_005191.1| DNA gyrase subunit B [Thermus thermophilus HB27]
 gi|46197150|gb|AAS81564.1| DNA gyrase subunit B [Thermus thermophilus HB27]
          Length = 640

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 274/589 (46%), Positives = 374/589 (63%), Gaps = 7/589 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +  +YDA +I++LKGL+ V+ RP+MYIG T G  G HH+  E+LDNA+DE+L GYA  I
Sbjct: 4   TEGVNYDASAIRVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEI 62

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V LN DGS TV DNGRGIP DL  EEG  A EVI T LH+GGKF Q +YKVSGGLHGVG
Sbjct: 63  LVRLNEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYTTLHSGGKFEQGAYKVSGGLHGVG 122

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183
            SVVNALS W  + + REG  + ++F  G +  PL V G A    TGT VTF P  +IF 
Sbjct: 123 ASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFG 182

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   ++ RLRE+++L + +++   D++    RE     KGG+ +F   L   +  L
Sbjct: 183 NLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG--REEVFLDKGGVASFAKALAEGEDLL 240

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            + P  I+G+   + +++      GY+  +L + N IP +DGGTHL+  +SA +R +  Y
Sbjct: 241 YEKPFLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQY 300

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K+  +K+      GDD  EG  +V+S+K+P+P+F  QTK KL++ E  + V   V + 
Sbjct: 301 AKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYER 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L   LEE+P  AK + +K L A+  R+AAR+AR+L RR+  L+   LPGKLADC   +P+
Sbjct: 361 LLEILEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQTENPE 420

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELF+VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K L + E+  +++A+G 
Sbjct: 421 EAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVSAIGV 480

Query: 484 GI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           GI   G+  FD+  LRYHKIIIMTDADVDG+HIRTLLLTFF+R M  LI  G +YI +PP
Sbjct: 481 GIGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPP 540

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY +  GK ++Y+  +E L+  L                G ++   L  
Sbjct: 541 LYRLQVGKKVEYLYSDEELQARLKELEGKSYEVQRFKGLGEMNPEQLWE 589



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 72/159 (45%)

Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
           I    E  +         ++      V    +      F +      I    +      +
Sbjct: 482 IGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPL 541

Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             L        +     L   +  +  K   +QR+KGLGEMN  QLWETT+NP+ R L R
Sbjct: 542 YRLQVGKKVEYLYSDEELQARLKELEGKSYEVQRFKGLGEMNPEQLWETTMNPEKRVLKR 601

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           V++ DA +A +LF +LMG EV PRREFI+E++  + LDI
Sbjct: 602 VELQDALEASELFEKLMGQEVAPRREFIEEHARYAELDI 640


>gi|54021970|ref|YP_116212.1| DNA gyrase subunit B [Nocardia farcinica IFM 10152]
 gi|54013478|dbj|BAD54848.1| putative DNA gyrase B subunit [Nocardia farcinica IFM 10152]
          Length = 696

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/603 (44%), Positives = 382/603 (63%), Gaps = 34/603 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++++Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA  + 
Sbjct: 30  KSTNYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATRVD 88

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DG   V D+GRGIP ++H + GI   EV+MT+LHAGGKF+ +SY VSGGLHGVG+
Sbjct: 89  VTLLADGGVEVVDDGRGIPVEMHAQ-GIPTVEVVMTQLHAGGKFDSESYAVSGGLHGVGI 147

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALSS +++ I  +G  +  ++      + L V G   + TGT V F    +IF   
Sbjct: 148 SVVNALSSRVEVEIDVDGYHWSQTYKEATP-SKL-VKGEPTDRTGTTVRFWADPEIFETT 205

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SP 216
            +N++T+  RL+E++FLN  + I+L D+R                               
Sbjct: 206 TYNFETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETAEAPKHGEPTGEAASEH 265

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           + +  T  Y GG+E FV +++R K+ +  S +   G      +++AM+WN GY E+V  F
Sbjct: 266 KVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGHELEVAMQWNSGYSESVHTF 325

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +
Sbjct: 326 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVAE 385

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR
Sbjct: 386 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKAR 445

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGK
Sbjct: 446 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 505

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           I+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++M DADVDG HI TL
Sbjct: 506 IINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVLMADADVDGQHISTL 564

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LLT  FR M  L+ +G +Y+ +PPLY +   +S       +   D L+ + L+   ++  
Sbjct: 565 LLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRSEPEFAYSDRERDGLLERGLAAGKKINK 624

Query: 577 DSK 579
           D  
Sbjct: 625 DDG 627



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G+K I+    +QRYKGLGEMN  +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 611 LLERGLAAGKK-INKDDGIQRYKGLGEMNPKELWETTMDPSVRVLRQVTLDDAAAADELF 669

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 670 SVLMGEDVEARRSFITRNAKDVRFLDV 696


>gi|332523189|ref|ZP_08399441.1| DNA gyrase, B subunit [Streptococcus porcinus str. Jelinkova 176]
 gi|332314453|gb|EGJ27438.1| DNA gyrase, B subunit [Streptococcus porcinus str. Jelinkova 176]
          Length = 650

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 280/613 (45%), Positives = 398/613 (64%), Gaps = 6/613 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  I V 
Sbjct: 13  QEYDASQIQVLEGLEAVRMRPGMYIGSTSSE-GLHHLVWEIVDNSIDEALAGFASHIEVF 71

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 72  IEEDNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 131

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186
           VNALS+ L +R+ + G I+   F  G++ + L + G     TGT V F P  +IF+    
Sbjct: 132 VNALSTQLDVRVYKNGQIHYQEFRRGVVVDDLKIIGETE-LTGTTVHFTPDPEIFTETVI 190

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN+D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI ++V YL+  K  ++++
Sbjct: 191 FNFDKLAKRIQELAFLNRGLRISISDKRPGMQQEKDFHYEGGIGSYVEYLNEKKDVIIET 250

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI   G  D I++++AM++  GYHENV+ F NNI   +GGTH  G R+ALTR I  Y +K
Sbjct: 251 PIYTDGEMDGIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKK 310

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++    
Sbjct: 311 NKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFHR 370

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D  ++E
Sbjct: 371 FLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDASQNE 430

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG G
Sbjct: 431 LFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFG 490

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+YG+  
Sbjct: 491 AD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKV 549

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           G  ++     +   +       + E      SK  + +      +DD    +  +     
Sbjct: 550 GNEIKEYI--QPGVNQETQLQDALEKYSSGRSKPSVQRYKGLGEMDDHQLWETTMDPENR 607

Query: 607 NHDKTFIEQAVIS 619
              K  ++ A  +
Sbjct: 608 LMAKVTVDDAAEA 620



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 2/90 (2%)

Query: 716 ITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           +     L D +     GR   S+QRYKGLGEM+  QLWETT++P+ R + +V + DA++A
Sbjct: 561 VNQETQLQDALEKYSSGRSKPSVQRYKGLGEMDDHQLWETTMDPENRLMAKVTVDDAAEA 620

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D +F  LMGD VEPRREFI+EN++ S LDI
Sbjct: 621 DRVFDMLMGDRVEPRREFIEENAVYSTLDI 650


>gi|159035681|ref|YP_001534934.1| DNA gyrase, B subunit [Salinispora arenicola CNS-205]
 gi|157914516|gb|ABV95943.1| DNA gyrase, B subunit [Salinispora arenicola CNS-205]
          Length = 648

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/548 (48%), Positives = 363/548 (66%), Gaps = 10/548 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A+SI +L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE+L GY D I V
Sbjct: 6   KQEYGAESITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEALAGYCDTIDV 64

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DG   V+DNGRG P D H +      EV +T LHAGGKF+ K+Y VSGGLHGVGVS
Sbjct: 65  VLLADGGVRVTDNGRGFPVDPHPKLKKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVS 124

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + I+++G  +  S+ +    +PL   G   + TG+ V+F P   +F   D
Sbjct: 125 VVNALSTRMAVEIQKDGYFWRQSYTDSKP-SPLEK-GEPTDATGSAVSFWPDPAVFETVD 182

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ T+  RL+E++FLN  + I  +D+R       + RE+T  YKGGI  FV +L+  K 
Sbjct: 183 FDFQTIYRRLQEMAFLNRGLTIHFLDERVAADEDGKMREVTFCYKGGIADFVRHLNASKT 242

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ +S +      D +S+++AM+WN+ Y E+V  F NNI   +GGTH  G R+ALT  I 
Sbjct: 243 PIHKSVVEFGTEEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVIN 302

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N
Sbjct: 303 RYGAD-KRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCN 361

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  WL+ +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   D
Sbjct: 362 EWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSMPGKLADCQSTD 421

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P++ E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITAL
Sbjct: 422 PRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITAL 481

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGI  D FDI KLRYHKI++M DADVDG HI+TLLLT  FR M  L+  G +Y+  PPL
Sbjct: 482 GTGI-HDDFDIEKLRYHKIVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPPL 540

Query: 542 YGITRGKS 549
           Y I   + 
Sbjct: 541 YKIKWNRK 548



 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMN  +LWETT+NP TR+L +V + DA+ AD+LFS LMG++VE RR FIQ N
Sbjct: 580 IQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAATADELFSVLMGEDVEARRSFIQRN 639

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 640 AKDVRFLDI 648


>gi|86607821|ref|YP_476583.1| DNA gyrase subunit B [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556363|gb|ABD01320.1| DNA gyrase, B subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 642

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 276/594 (46%), Positives = 390/594 (65%), Gaps = 11/594 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N     Y A+ IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY
Sbjct: 1   MTEN-----YGAEQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVYEVVDNSVDEALAGY 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I ++L+ DGS +V DNGRGIP D+H + G SA   ++T LHAGGKF    YKVSGGL
Sbjct: 55  CNDIQISLHPDGSVSVLDNGRGIPVDIHPKTGQSALVTVLTVLHAGGKFGGGGYKVSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFLPS 178
           HGVGVSVVNALS W+++ + REG +Y   F  G +   L         N  GTEV F P 
Sbjct: 115 HGVGVSVVNALSEWVEVTVWREGKVYFQRFERGAVVGSLKSEPQPKGSNRRGTEVRFKPD 174

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF  ++F+Y  L  R REL++LN+ ++I+  D R   P   T  Y GGI+ +V++++ 
Sbjct: 175 GLIFPEREFDYAVLAARFRELAYLNAGLKITFSDLRRDPPHCETYQYAGGIKEYVAFINH 234

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            K P+    I IQG RD + +++A++W  D Y + ++ F NNI   +GGTHL GL+++LT
Sbjct: 235 EKTPIHSDIIYIQGERDGVEVEVALQWCSDVYTDTLIGFANNIRTNEGGTHLEGLKTSLT 294

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             I S   K    K    ++ G++ REG T+++S+K+P+P F  QTK KL ++EVR +V+
Sbjct: 295 LTINSQARKLNKLKDSDSNLAGENVREGLTAIVSVKVPNPEFEGQTKTKLGNTEVRGIVQ 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + V++ L+ +LE +P  A+ IV K + +    +AARRAR+L RRK  L+ ++LPGKLADC
Sbjct: 355 TLVSEALTEYLEFNPNVARGIVDKAIQSFNAAEAARRARELVRRKSALESSTLPGKLADC 414

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S RDP +SE++LVEGDSAGGSAKQGR R+ QA+LPLRGKILN+E+A   K+  + EI  +
Sbjct: 415 SCRDPAESEVYLVEGDSAGGSAKQGRDRQFQAVLPLRGKILNIEKADPAKIYKNAEIQAM 474

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALG G+  D FD ++LRYH+II+MTDADVDG+HIRTLLLTFF+R   +L+  G++YI 
Sbjct: 475 ITALGLGVKGDEFDPSQLRYHRIILMTDADVDGSHIRTLLLTFFYRYQKALLEQGYVYIA 534

Query: 538 KPPLYGITR-GKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            PPLY I     +++Y   +   +  L     + +         G +    L  
Sbjct: 535 CPPLYKIEWGRNNVRYCYSDAEKDQILRGLPANAKYTIQRFKGLGEMMPEQLWE 588



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 5/86 (5%)

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            +L  + +  +   ++QR+KGLGEM   QLWETT+NP TR+L ++ I DA +AD +F+ L
Sbjct: 559 QILRGLPANAK--YTIQRFKGLGEMMPEQLWETTMNPATRTLKQITIEDAVEADRIFTIL 616

Query: 781 MGDEVEPRREFIQENS--LP-SALDI 803
           MGD V PRREFI+ +S  L  +ALDI
Sbjct: 617 MGDAVGPRREFIEAHSAHLDLAALDI 642


>gi|295103719|emb|CBL01263.1| DNA gyrase subunit B [Faecalibacterium prausnitzii SL3/3]
          Length = 664

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 270/607 (44%), Positives = 380/607 (62%), Gaps = 23/607 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +D   +  Y+A  IQ+LKGL+AV+KRP MYIG T GE GLHH++YE++DNAIDE+L GY 
Sbjct: 11  ADTATDHEYNASEIQVLKGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAIDEALAGYC 69

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119
           D I V +  D    V+DNGRGIP D+  + G+ A  V+ T LHAGGKF      YKV+GG
Sbjct: 70  DHIEVKILKDNIIQVTDNGRGIPVDIQADTGLPAVTVVYTILHAGGKFGGENSGYKVAGG 129

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPS 178
           LHGVG SVVNA S WL + ++R+G  YE +F  G  D  L   G+ A   TGT VTF P 
Sbjct: 130 LHGVGASVVNACSEWLTVNVRRDGKEYEQTFRRGDPDGALKCIGTVAEGVTGTRVTFKPD 189

Query: 179 SDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR-------------SPEPREITMF 224
            ++F     +++DTL+ RLRE SFLN+ V+I+L D+R              P  R   M 
Sbjct: 190 PEMFKDTTVYDFDTLEKRLREESFLNAGVKITLTDERQLYTPVLEDGQEGDPCYRSEVMC 249

Query: 225 YKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y+GGI++FV+Y    R  + L  + I ++G  D    ++A+++N  Y+E +L F NN+  
Sbjct: 250 YEGGIKSFVTYLGEKRKLEVLHPNVIYLKGQTDRGVAEIALQYNSSYNELLLSFANNVNT 309

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            DGGTH  G +++LTR    Y       K    ++ G D REG   V+S+K+ +  F  Q
Sbjct: 310 PDGGTHEEGFKASLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQEAEFEGQ 369

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++E+R++V + V   L  + EE+P  AK I +K   A+  R AA++AR+L RRK
Sbjct: 370 TKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKARELVRRK 429

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+ + +PGKLADC E+DP ++E+F+VEGDSAGGSAK GR    QAILPL GK+LNVE+
Sbjct: 430 SALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWGKMLNVEK 489

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR DK+  + ++  ++ ALG GIG D FDI+KLRY K+ IM DADVDG+HI TL+LTFFF
Sbjct: 490 ARADKIYGNDKLMPVVLALGCGIG-DEFDISKLRYDKVFIMADADVDGSHICTLMLTFFF 548

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           R M  LI  G +Y+ +PPL+ + +G +++Y  ++  +   +++Q +           G +
Sbjct: 549 RYMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMA--ILSQEMPGAKVNRYKGLGEM 606

Query: 583 SKNDLRN 589
           +   L  
Sbjct: 607 NPEQLWE 613



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
             L  +  G+ IK     + +  +      G  + RYKGLGEMN  QLWETT+NPD R +
Sbjct: 565 PPLFKVQKGNTIKYAYNDAEMAILSQE-MPGAKVNRYKGLGEMNPEQLWETTMNPDNRVI 623

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +++ I DA +AD+ F+ LMGD+VEPRR FI+ N+  + LD+
Sbjct: 624 VQITIEDAEKADEAFTILMGDQVEPRRRFIETNAQYAKLDV 664


>gi|299820837|ref|ZP_07052726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
           20601]
 gi|299817858|gb|EFI85093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
           20601]
          Length = 646

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 282/597 (47%), Positives = 403/597 (67%), Gaps = 11/597 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVQSNASDYNDDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCSEIEITIEEDNSITVRDNGRGIPTGINEKVGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L++ + R+G  Y   F  G +   +   G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTDLEVYVHRDGQKYYQRFEQGNVVMDMEERGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P  +IF+    F++DTL+ R REL+FLN +++IS+ DKR          Y+GGI ++V
Sbjct: 179 FKPDPEIFTETTVFDFDTLRTRARELAFLNKNLRISIEDKREEHQVRKDYHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K+ + + PI ++G R++I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKSKEVIHEPPIYLEGEREDIMVEISMQYNTGFASNLISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPNPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           ++ +   ++ L+ ++ E+P   K IV+K + AS  R AA+RARD+ R+   L+I++LPGK
Sbjct: 359 TITDKLFSEALNKFMMENPDVGKKIVEKGVVASRARMAAKRARDVARKTSGLEISNLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P+ SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR DK+L+++E
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDKILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+ TA+GTG G D F++ K RYHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G+
Sbjct: 479 IRTIFTAMGTGFGGD-FNVAKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +YI +PPLY I  GK ++YV  ++ L+DYL +     +         G ++   L  
Sbjct: 538 IYIAQPPLYQIKHGKEVEYVYTDKQLDDYLASIGSDTKYAIQRYKGLGEMNPEQLWE 594



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 5/218 (2%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           +  + QA++     + N E  +   +    ++      +  
Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDKILANEEIRTIFTAMGT 488

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                ++ +      L+      V    +        +      + +  I      +  +
Sbjct: 489 GFGGDFNVAKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQI 548

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
               +   +     L D + SIG     ++QRYKGLGEMN  QLWETT+NP+ R+LL+V 
Sbjct: 549 KHGKEVEYVYTDKQLDDYLASIGSDTKYAIQRYKGLGEMNPEQLWETTMNPEHRTLLQVN 608

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           I DA  AD+ F  LMGD VEPRR+FI+EN+     LDI
Sbjct: 609 INDAIDADETFEMLMGDRVEPRRKFIEENAQYVKNLDI 646


>gi|171920695|ref|ZP_02931917.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185178763|ref|ZP_02554678.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024457|ref|ZP_02570760.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518714|ref|ZP_02557214.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524147|ref|ZP_02557455.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867481|ref|ZP_03079485.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273562|ref|ZP_03206098.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209554430|ref|YP_002284500.1| DNA gyrase subunit B [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550770|ref|ZP_03771719.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551162|ref|ZP_03772108.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|171903433|gb|EDT49722.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209375|gb|EDU06418.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018752|gb|EDU56792.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997713|gb|EDU66810.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195660124|gb|EDX53504.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660957|gb|EDX54210.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198250082|gb|EDY74862.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209541931|gb|ACI60160.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225378977|gb|EEH01342.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225379924|gb|EEH02286.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 650

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 256/602 (42%), Positives = 374/602 (62%), Gaps = 17/602 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D+ + + Y A+SI++L+GL+AV+KRP MYIG T  E GLHHMI+E++DN+IDE++ G+
Sbjct: 1   MNDSNKENKYTAESIKVLEGLEAVRKRPGMYIGSTQSE-GLHHMIWEIVDNSIDEAMGGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A ++ V +  DG   V D+GRGIP  +H++ G+S  E ++T LHAGGKF+  SYKVSGGL
Sbjct: 60  ATVVKVIIKKDGVIRVEDDGRGIPVGIHEKTGLSGVETVLTVLHAGGKFDNDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGND-TGTEVTFLPS 178
           HGVG SVVNALS   K+ + +    + + FIN G    PL +         GT + F+P 
Sbjct: 120 HGVGASVVNALSKNFKVWVNKNYVQHYVEFINGGHAIEPLKIINDKDIKEKGTTIEFIPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I    +++   +  RL++L++LN  V I    +     R+    Y+GG++ +++ L+ 
Sbjct: 180 FEIMEENEWDELKIMARLKQLAYLNKGVNIEF--ESEMTNRKEKWHYEGGLKEYIADLNA 237

Query: 239 HKKPLMQSPIRIQGSR-----------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            K+PL  + +  +  +            NI  ++A ++N+ Y+ +   F NNI   +GGT
Sbjct: 238 EKEPLFDAIVYGEEEKEVKVPGHNDQTYNIKCEVAFQYNNSYNNSTHSFCNNINTTEGGT 297

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G + A+TR +  Y       K     +  +D  EG T+++SIK P+P++  QTK+KL
Sbjct: 298 HEEGFKLAITRLLNKYAIDKKYLKDTDDKITKEDVSEGLTAIISIKHPNPQYEGQTKKKL 357

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SEVR  V    +     +L E+P E+K IV KV+ A+  R  +  AR+ TRRK   + 
Sbjct: 358 GNSEVRPYVNEITSIIFEKFLNENPEESKKIVAKVMQAAEARRRSHEAREATRRKSPFES 417

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            SLPGKLADCS RD   +E+++VEGDSAGGSAK GR RE QAILPLRGKI+NVE+A+ DK
Sbjct: 418 NSLPGKLADCSNRDSSVTEIYIVEGDSAGGSAKTGREREFQAILPLRGKIINVEKAKIDK 477

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           + +++EI  +ITA G GIG   F+I KLRY KIIIMTDADVDG+HIR LLLTFF+R M  
Sbjct: 478 IFANEEIQNMITAFGAGIG-PEFNIEKLRYSKIIIMTDADVDGSHIRILLLTFFYRYMLP 536

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI NG +YI +PPLY ++ GK+++Y   ++ LE        ++         G ++ + L
Sbjct: 537 LIQNGNVYIAQPPLYKVSYGKTIKYAYSDQELEKIKSTLLNTKYNIQRYKGLGEMNPDQL 596

Query: 588 RN 589
             
Sbjct: 597 WE 598



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 7/186 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++ N +          ++        ++      V    +    
Sbjct: 467 IINVEKAKIDKIFANEEIQNMITAFGAGIGPEFNIEKLRYSKIIIMTDADVDGSHIRILL 526

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS---IGRKGISMQ 737
             F +      +  N         L  +  G  IK       L+ I S     +   ++Q
Sbjct: 527 LTFFYRY-MLPLIQNGNVYIAQPPLYKVSYGKTIKYAYSDQELEKIKSTLLNTK--YNIQ 583

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN  QLWETT++P  R LL+V I DA+ AD  FS LMGD+V PR+EFI++N+ 
Sbjct: 584 RYKGLGEMNPDQLWETTMDPKNRLLLKVNIEDAAIADKTFSLLMGDDVTPRKEFIEKNAK 643

Query: 798 PS-ALD 802
               +D
Sbjct: 644 YVKNID 649


>gi|118445175|ref|YP_879293.1| DNA gyrase subunit B [Clostridium novyi NT]
 gi|118135631|gb|ABK62675.1| DNA gyrase, B subunit [Clostridium novyi NT]
          Length = 637

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 292/614 (47%), Positives = 414/614 (67%), Gaps = 10/614 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               YD   IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DN+IDE+L G+   I 
Sbjct: 3   NKQVYDESQIQVLEGLEAVRKRPGMYIG-TTGIRGLHHLVYEIVDNSIDEALAGFCQNIE 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V ++ D   TV D+GRG+P  +H +      EVIMT LHAGGKF    YKVSGGLHGVG 
Sbjct: 62  VLIHKDNCITVKDDGRGMPVGIHPKMKKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS    + ++R+G+I+  ++  G + + L + G   ++ GT V F P  +IF   
Sbjct: 122 SVVNALSKECNVEVRRDGHIWSQNYKKGKVVSELTIVGDT-DEHGTSVYFKPDDEIFEEV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y TL  RLREL+FLN  ++I L+D+R    R     Y+GGI++FVS+L+R+K+ L  
Sbjct: 181 EFDYSTLAQRLRELAFLNKGIKIILVDEREGNERRDEFHYEGGIKSFVSFLNRNKQTLHA 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++G++D+  +++ +++ND Y+EN+  F NNI   +GGTHL+G ++ALTR +  Y  
Sbjct: 241 EPIYVEGNKDDYLVEVGLQYNDTYNENIFSFANNIDTVEGGTHLAGFKTALTRVLNDYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           +    K++ +++ GDD REG T+V+S+K+ DP+F  QTK KL ++EVR +V+S V++ +S
Sbjct: 301 RYGFLKENDKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNTEVRGIVDSIVSERVS 360

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LEE+P  AKI+++K L A+  R+AA++AR+LTRRK VL+  SLPGKLADCS +DP + 
Sbjct: 361 IFLEENPDTAKIVIEKSLTAARAREAAKKARELTRRKSVLESTSLPGKLADCSSKDPSEC 420

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGGSAKQGR R  QAILPLRGKI+NVE+ R DK+L+S +I  +ITA G GI
Sbjct: 421 EIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSDQIRAMITAFGAGI 480

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D FDI K+RYH+IIIMTDADVDGAHI TLLLTFF+R M  L+  G +YI +PPLY + 
Sbjct: 481 GKD-FDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVDGGHVYIAQPPLYQVK 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GKS+ Y   +  L++ L             D    I +      +D     D  +   +
Sbjct: 540 KGKSVNYAYSDNELQEVLAQIGGK-------DKNTEIQRYKGLGEMDAGQLWDTTMNPEH 592

Query: 606 PNHDKTFIEQAVIS 619
               K  I+ A+ +
Sbjct: 593 RTLVKVTIDDAMRA 606



 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 5/130 (3%)

Query: 679 GSSIFSFGSKYKRIF-SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGI 734
            + + +F  +Y R              L  +  G  +      + L  + +   G+ K  
Sbjct: 508 ATLLLTFFYRYMRELVDGGHVYIAQPPLYQVKKGKSVNYAYSDNELQEVLAQIGGKDKNT 567

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QRYKGLGEM+A QLW+TT+NP+ R+L++V I DA +AD++F+ LMGD+VEPRREFI+E
Sbjct: 568 EIQRYKGLGEMDAGQLWDTTMNPEHRTLVKVTIDDAMRADEVFTILMGDKVEPRREFIEE 627

Query: 795 NSLP-SALDI 803
           N+     LDI
Sbjct: 628 NAKKVVNLDI 637


>gi|225570329|ref|ZP_03779354.1| hypothetical protein CLOHYLEM_06426 [Clostridium hylemonae DSM
           15053]
 gi|225160861|gb|EEG73480.1| hypothetical protein CLOHYLEM_06426 [Clostridium hylemonae DSM
           15053]
          Length = 644

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 301/592 (50%), Positives = 393/592 (66%), Gaps = 5/592 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS       Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+
Sbjct: 1   MSTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D S TV DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGL
Sbjct: 60  CDTIYVTINQDNSVTVVDNGRGIPVGINSKAGLPAVEVVFTILHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS+WL++ I  EG +Y   +  G +   L V G    + TGT+VTFLP  
Sbjct: 120 HGVGASVVNALSNWLEVEIYSEGKVYMQRYERGKVAKKLAVIGECGSDKTGTKVTFLPDD 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI-DKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF    F YD L+ R RE++FL   ++I L  D+   EP E T  Y+GGI+ FV YL+R
Sbjct: 180 TIFEETVFEYDVLKQRFREMAFLTKGLKIVLRDDRPEDEPVEKTFHYEGGIKQFVEYLNR 239

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL +S I  +G  +N+++++AM+ ND Y +N   F NNI   +GGTH+ G R+ALT+
Sbjct: 240 SKTPLYESIIYCEGLVNNVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIVGFRNALTK 299

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
               Y  K+   K  + ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V+S
Sbjct: 300 TFNDYARKNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDS 359

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V+  L  +LE++P  AK+ V+K + A   R+AAR+ARDLTRRK  LD  SLPGKLADCS
Sbjct: 360 VVSSQLEIFLEQNPSVAKMTVEKSVMAQRAREAARKARDLTRRKSALDSMSLPGKLADCS 419

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ++DPK  E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+ ++ EI  +I
Sbjct: 420 DKDPKNCEIYIVEGDSAGGSAKTARDRGTQAILPLRGKILNVEKARLDKIYANAEIKAMI 479

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGI  D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +
Sbjct: 480 TAFGTGI-HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQ 538

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PPLY + + K + Y   +E L+  L                 G +    L  
Sbjct: 539 PPLYKLEKNKKVWYAYSDEELDTILREVGRDGSNKIQRYKGLGEMDAGQLWE 590



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G  ++ DI   R  + +      ++G+ I +    +  R   + I+E Y+      +  
Sbjct: 484 TGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYK 543

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           L  N           L   +  +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 544 LEKNKKVWYAYSDEELDTILREVGRDGSNKIQRYKGLGEMDAGQLWETTMDPEHRILLRV 603

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + D +  + D  F+ LMGD+VEPRREFI+EN+     LD+
Sbjct: 604 TMDDETTSELDLTFTTLMGDKVEPRREFIEENAKYVQNLDV 644


>gi|1213062|emb|CAA63917.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155]
          Length = 675

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 272/678 (40%), Positives = 384/678 (56%), Gaps = 38/678 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+   N     Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ 
Sbjct: 1   MAAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+A  + V ++ DGS  V D+GRGIP ++H   G+   +V+MT+LHAGGKF+ ++Y VSG
Sbjct: 60  GFATRVDVKIHADGSVEVRDDGRGIPVEMHA-TGMPTIDVVMTQLHAGGKFDGETYAVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L+  + R+G  +   +   +    L   G    +TGT + F   
Sbjct: 119 GLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVP-GKLKQGGETK-ETGTTIRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
            +IF   D+N++T+  RL+E++FLN  + I L D+R                        
Sbjct: 177 PEIFETTDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y GG+  +V +++R K P+ QS I   G      +++AM+WN G
Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P EAK +V K + ++  
Sbjct: 357 VISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGK ADC   DP KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKSADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+ ++I ALGTGI  D FDI+KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQSIIRALGTGI-HDEFDISKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  L+ NG +++ +PPLY +   +S  ++   +   +  L    
Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEAGR 595

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
            + +     D           +  +                       A          D
Sbjct: 596 AAGKKINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655

Query: 628 QEINVSLASKLANRLNFI 645
            E   S  ++ A  + F+
Sbjct: 656 VEARRSFITRNAKDVRFL 673



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LLEAGRAAGKK-INVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675


>gi|89114228|gb|ABD61709.1| DNA gyrase subunit B [Acholeplasma oculi]
          Length = 594

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 284/587 (48%), Positives = 390/587 (66%), Gaps = 6/587 (1%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYA  IT+ +       V
Sbjct: 1   ILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYASEITIEVQKGNIIQV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
           +DNGRGIP D+H +    A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W  
Sbjct: 60  TDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWYL 119

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHR 195
           + I ++G IYE  +  GI    L        +TGT+ TFL    IF+    +N +TL++R
Sbjct: 120 VEIHKDGKIYEQKYERGIPAYDLREL-GTTEETGTKTTFLADPLIFTETTVYNLETLKNR 178

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           +++L+FLN  ++++LID R   P + T  Y+GGI  +V +L++ K  + Q  I  +  +D
Sbjct: 179 IQQLAFLNKGLKLTLIDSRLETPYQETFHYEGGIVEYVQFLNQSKTKIHQDVIYTEKEQD 238

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
            +++++AM++ D Y  N+  FTNNI   +GG H  G + ALTR I+ Y +          
Sbjct: 239 GVTVEIAMQFVDSYSPNIHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMK--KDD 296

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            ++G+D REG T+++S+K P+P+F  QTK KL + EVR++    + + L  +L E+P +A
Sbjct: 297 VILGEDAREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQILGESLERFLLENPQQA 356

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K+IV KVL A+  R AAR+A++LTRRK  LD      KLADC  +DP KSE+++VEGDSA
Sbjct: 357 KLIVDKVLLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPMKSEIYIVEGDSA 416

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAKQGR  E QAI+PLRGK+LNVE+AR DKMLS++EI  LI A+GTGI  D FDI KL
Sbjct: 417 GGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGI-SDEFDITKL 475

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RYHKI+IMTDADVDGAHIRTLLLTF FR M  LI  G++Y  +PPLY +T GK+L+YV  
Sbjct: 476 RYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNLKYVYS 535

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           E+ L + L +      I+ +     + ++      +D A +    IK
Sbjct: 536 EDELNETLKSIETKPGIQRYKGLGEMNAEQLWDTTMDPATRTLLQIK 582



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 3/159 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +   +    ++ N +  +       +  +      +V      V    +    
Sbjct: 438 VLNVEKARLDKMLSNKEIVNLIQAMGTGISDEFDITKLRYHKIVIMTDADVDGAHIRTLL 497

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQRY 739
             F F      I +  +      +  +    +   +     L +T+ S   + G  +QRY
Sbjct: 498 LTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNLKYVYSEDELNETLKSIETKPG--IQRY 555

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           KGLGEMNA QLW+TT++P TR+LL++K+ DA +AD +FS
Sbjct: 556 KGLGEMNAEQLWDTTMDPATRTLLQIKLEDAIEADQVFS 594


>gi|86606189|ref|YP_474952.1| DNA gyrase subunit B [Synechococcus sp. JA-3-3Ab]
 gi|86554731|gb|ABC99689.1| DNA gyrase, B subunit [Synechococcus sp. JA-3-3Ab]
          Length = 642

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 278/594 (46%), Positives = 390/594 (65%), Gaps = 11/594 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N     Y A+ IQ+L+GL+AV++RP MYIG T G  GLHH++YEV+DN++DE+L GY
Sbjct: 1   MTEN-----YGAEQIQVLEGLEAVRRRPGMYIGST-GPKGLHHLVYEVVDNSVDEALAGY 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VTL+ DGS +V DNGRGIP D+H + G SA   +MT LHAGGKF    YKVSGGL
Sbjct: 55  CNEIEVTLHPDGSVSVLDNGRGIPVDIHPKTGQSALVTVMTVLHAGGKFGGGGYKVSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPS 178
           HGVGVSVVNALS WL+ R+ REG +Y   F  G +   L            GTEV F P 
Sbjct: 115 HGVGVSVVNALSEWLEARVWREGKVYFQRFERGAVVGSLQSEPQPAGAQRRGTEVRFKPD 174

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF  ++F+Y  L  RLREL++LN+ ++I   D R   P      + GGI+ +V++++ 
Sbjct: 175 ELIFPEREFDYSLLAARLRELAYLNAGLKIIFSDLRRDPPHREVYQFAGGIKEYVAFINH 234

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            K P+    I ++G RD + ++ A++W  D Y + ++ F NNI   +GGTHL GL++ALT
Sbjct: 235 EKTPIHPDIIYVRGERDGVEVEAALQWCADVYTDTLIGFANNIRTTEGGTHLEGLKTALT 294

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             I S   K    K    ++ G++ REG T++L++K+P+P F  QTK KL ++EVR +V+
Sbjct: 295 LTINSQARKLNKLKDSDSNLAGENVREGLTAILAVKVPNPEFEGQTKTKLGNTEVRGIVQ 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + V++ L+ +LE +P  A+ IV+K + +    +AARRAR+L RRK  L+ ++LPGKLADC
Sbjct: 355 TLVSEALTEYLEFNPNVARGIVEKAIQSFNAAEAARRARELVRRKSALESSTLPGKLADC 414

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S RDP +SE++LVEGDSAGGSAKQGR R+ QA+LPLRGKILN+E+A   K+  + EI  +
Sbjct: 415 SCRDPAESEVYLVEGDSAGGSAKQGRDRQFQAVLPLRGKILNIEKADPAKIYKNAEIQAM 474

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALG G+  + FD ++LRYH+II+MTDADVDG+HIRTLLLTFF+R   +L+  G++YI 
Sbjct: 475 ITALGLGVKGEEFDPSQLRYHRIILMTDADVDGSHIRTLLLTFFYRYQKALLEQGYVYIA 534

Query: 538 KPPLYGITR-GKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            PPLY I     +++Y  +E   E  L +   + +         G +    L  
Sbjct: 535 CPPLYKIEWGRNNVRYCYNEAEKEQVLRSLPANTKYTIQRFKGLGEMMPEQLWE 588



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
            ++QR+KGLGEM   QLWETT+NP TR L ++ I DA++AD +F+ LMGD V PRREFI+
Sbjct: 570 YTIQRFKGLGEMMPEQLWETTMNPATRVLKQITIEDAAEADRIFTILMGDAVGPRREFIE 629

Query: 794 ENS--LP-SALDI 803
            +S  L  +ALDI
Sbjct: 630 AHSAQLDLAALDI 642


>gi|323484278|ref|ZP_08089646.1| hypothetical protein HMPREF9474_01397 [Clostridium symbiosum
           WAL-14163]
 gi|323694735|ref|ZP_08108893.1| B subunit [Clostridium symbiosum WAL-14673]
 gi|323402430|gb|EGA94760.1| hypothetical protein HMPREF9474_01397 [Clostridium symbiosum
           WAL-14163]
 gi|323501172|gb|EGB17076.1| B subunit [Clostridium symbiosum WAL-14673]
          Length = 639

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 257/622 (41%), Positives = 375/622 (60%), Gaps = 14/622 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + YDADSI +L+GL+AV+KRP MYIG   G  GL+H+IYE++DN++DE L G  + I
Sbjct: 1   MAKTQYDADSITVLEGLEAVRKRPGMYIGGV-GTKGLNHLIYEIVDNSVDEHLAGECNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DGSCTV DNGRGIP ++HK+ G+SA  ++++ LHAGGKF+  +YK SGGLHGVG
Sbjct: 60  WVTLEADGSCTVRDNGRGIPVEMHKK-GVSAERIVLSTLHAGGKFDNNAYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSS 179
            SVVNALS  + + + + G I+  ++  GI         L V G    +TGT++ F+P  
Sbjct: 119 SSVVNALSEHMDVTVYKNGQIHHDAYERGIPTVKLVDGLLPVIGKT-RETGTKINFMPDG 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    F  + L+ RL E ++LN  + I   +KR+ E  +IT     GI A+V  L+  
Sbjct: 178 EIFEKTRFKAEWLKSRLHETAYLNPRLSIHYENKRAGEAEKITYSEPEGILAYVKELNST 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+   P   +G+ +NI +++A ++ D + ENVL F NNI  ++GGTHL G ++  T  
Sbjct: 238 KTPVH-EPFYFKGTSENIEVEVAFQFVDTFEENVLGFCNNIFTQEGGTHLVGFKTRFTTM 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY  +    K+   +  G D R G T+V+++K PDP F  QTK KL S++    V + 
Sbjct: 297 INSYARELGILKEKDSNFTGADTRNGMTAVIAVKHPDPIFEGQTKTKLASADCTKAVFNV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + L  + + +    K ++     ++ +R A  +A+     K      S  GKLA+C  
Sbjct: 357 TGEELQLYFDRNVEVLKAVIACAEKSAKIRKAEEKAKTNMLTKSKFSFDS-NGKLANCES 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RD +K E+F+VEGDSAGGSAK GR+R+ QAILP+RGKILNVE+A  DK+L++ EI T+I 
Sbjct: 416 RDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKATMDKVLANAEIKTMIN 475

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
             G G  +   + FDI KLRY+KII+MTDADVDG+HI TLLLTF +R MP LI NG +YI
Sbjct: 476 TFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELISNGHVYI 535

Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
             PPL+  I +    +Y+ DE++LE Y  N +    ++ +     + ++      ++   
Sbjct: 536 AMPPLFKVIPKKGKEEYLYDEKALERYRKNHTGDFTLQRYKGLGEMDAEQLWETTLNPEN 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
           +I K ++           E  +
Sbjct: 596 RILKRVEIEDARMASEITEMLM 617



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTLNP+ R L RV+I DA  A ++   LMG EV PRR+FI E
Sbjct: 571 TLQRYKGLGEMDAEQLWETTLNPENRILKRVEIEDARMASEITEMLMGSEVPPRRQFIYE 630

Query: 795 NSLPSALD 802
           ++  + +D
Sbjct: 631 HADEAEID 638


>gi|56963754|ref|YP_175485.1| DNA topoisomerase IV subunit B [Bacillus clausii KSM-K16]
 gi|56909997|dbj|BAD64524.1| DNA topoisomerase IIA subunit B [Bacillus clausii KSM-K16]
          Length = 656

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/661 (40%), Positives = 381/661 (57%), Gaps = 22/661 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q+  Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAK--QHVEYNEDAIQVLEGLEAVRKRPGMYIGSTD-VRGLHHLVYEIVDNAVDEALGGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S ++ D GRG+P  +H   G    EVI T LHAGGKF Q  Y  SGGL
Sbjct: 58  GNTIKVTIHKDQSVSIEDEGRGMPVGMH-RSGKPTPEVIFTVLHAGGKFGQGGYATSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ IKR+G  Y   F   G     L   G     +GT V F P  
Sbjct: 117 HGVGASVVNALSEWLEVEIKRDGYRYTQRFEQGGKPVTTLEKKGKT-RASGTTVRFKPDE 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   FN + L  RLRE +FL   VQI L DKR  +       +  G+EAFV YL+  
Sbjct: 176 GIFSTIQFNSEILAERLREAAFLLKGVQIELTDKRPEKELHEVFKFDTGLEAFVDYLNEG 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L    +   GS ++I +D + +++D Y ENVL F NN+  +DGGTH  G ++A+TR 
Sbjct: 236 KEALHP-VVSFSGSANDIQMDFSFQFHDAYTENVLSFVNNVRTRDGGTHELGAKTAMTRI 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           +  +  K    K+  +++ G D REGFT+V+S+++P+   +F  QTK KL + E RS V+
Sbjct: 295 MNEHARKIGVLKEKDKNLDGSDIREGFTAVVSVRVPEAKLQFEGQTKSKLGTPEARSAVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ LS +LEE+P  A +++KK + A+  R+AAR+AR+     +K       L GKL 
Sbjct: 355 AIVSENLSYFLEENPAVATMLLKKAMKAAQAREAARKAREDARNGKKNKRKDVLLSGKLT 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P ++EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ D ++ ++EI 
Sbjct: 415 PAQSRNPARNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLDDIMKNEEIR 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G D FD     Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 475 TIIHTIGAGVGAD-FDSADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIDEGKIY 533

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y  DE  L+   + +             G ++   L    
Sbjct: 534 IALPPLYKVSKGSGKKEQVEYAWDENELQA-ALKKVGRGSTVQRYKGLGEMNATQLWET- 591

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                +D   +       +              +  +     + S +A  L       E 
Sbjct: 592 ----TMDPATRTLIRVRLEDAARAEKHVATLMGDKVEPRRKWIESHVAFGLEEDTNILEN 647

Query: 652 S 652
            
Sbjct: 648 E 648



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 5/257 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +    +    +   +     ++  +++ L        S+N  RN +           
Sbjct: 378 KAMKAAQAREAARKAREDARNGKKNKRKDVLLSGKLTPAQSRNPARNELYLVEGDSAGGS 437

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  K      +   V N E  +  ++    ++   ++ I       +  +  N D 
Sbjct: 438 AKQGRDRKFQAVLPLRGKVINTEKAKLDDIMKNEEIRTIIHTIGAGVGADFDSADCNYDK 497

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---G 718
           +V           +      F +      I   +I      +  +    G K ++     
Sbjct: 498 VVIMTDADTDGAHIQVLLLTFFYRYMKPLIDEGKIYIALPPLYKVSKGSGKKEQVEYAWD 557

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              L   +  +GR G ++QRYKGLGEMNA+QLWETT++P TR+L+RV++ DA++A+   +
Sbjct: 558 ENELQAALKKVGR-GSTVQRYKGLGEMNATQLWETTMDPATRTLIRVRLEDAARAEKHVA 616

Query: 779 RLMGDEVEPRREFIQEN 795
            LMGD+VEPRR++I+ +
Sbjct: 617 TLMGDKVEPRRKWIESH 633


>gi|291550229|emb|CBL26491.1| DNA topoisomerase IV subunit B [Ruminococcus torques L2-14]
          Length = 640

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 255/620 (41%), Positives = 363/620 (58%), Gaps = 14/620 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N++YDA SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L G+   I V
Sbjct: 4   NNTYDAGSIAVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGFCSEIQV 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGS TVSDNGRG+P D+H++ G+SAA ++ T LHAGGKF+  +YK SGGLHGVG S
Sbjct: 63  TLEKDGSATVSDNGRGVPVDMHQK-GVSAARLVYTTLHAGGKFDDSAYKTSGGLHGVGSS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSDI 181
           VVNALS+++ ++I R+G ++   +  GI    L        G     TGT V FLP   I
Sbjct: 122 VVNALSTYMDVKISRDGFVHHDRYERGIPVIELEDGLLPKIGKT-RKTGTTVNFLPDDTI 180

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F  + ++ RL E ++LN ++ I   DKR      I      GI  F+  L+R K+
Sbjct: 181 FEKTKFKAEEVKSRLHETAYLNPNLTIVFDDKREGSVEHIVYHEPEGIIGFIQDLNRKKE 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   P+  +G  D I +++ +++ + +HENVL F NNI   +GGTHL+G ++  T  + 
Sbjct: 241 VLH-DPVYFKGEADGIEVEVTLQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVMN 299

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +    V     
Sbjct: 300 QYAREIGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAAKAVSKVTG 359

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + +  + + +    K ++     A+ +R    +A+     K      S  GKLA+C  RD
Sbjct: 360 EEIVRFFDRNLDTLKTVLSSAEKAAKIRKTEEKAKTNLLTKQKYSFDS-NGKLANCESRD 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I A 
Sbjct: 419 PKKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLANAEIKTMINAF 478

Query: 482 GTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI  G +YI  
Sbjct: 479 GCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIFEGHVYIAM 538

Query: 539 PPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           PPLY    +    +Y+ D+++LE Y    +    ++ +     + ++      +D   ++
Sbjct: 539 PPLYKAMPKSGEEEYLYDDKALERYRKTHTGPFTLQRYKGLGEMDAEQLWETTLDPERRM 598

Query: 598 DKLIKDFYPNHDKTFIEQAV 617
            K ++        +  E  +
Sbjct: 599 LKRVEIEDARMASSVTEMLM 618



 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 50/69 (72%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTL+P+ R L RV+I DA  A  +   LMG EV PRR FI E
Sbjct: 572 TLQRYKGLGEMDAEQLWETTLDPERRMLKRVEIEDARMASSVTEMLMGTEVPPRRNFIYE 631

Query: 795 NSLPSALDI 803
           N+  + LDI
Sbjct: 632 NATEAELDI 640


>gi|291297544|ref|YP_003508822.1| DNA gyrase subunit B [Stackebrandtia nassauensis DSM 44728]
 gi|290566764|gb|ADD39729.1| DNA gyrase, B subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 656

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 270/559 (48%), Positives = 365/559 (65%), Gaps = 14/559 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A S+ +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ G+ D 
Sbjct: 5   EKKQDDYNAGSLTVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGHCDT 63

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+  D    V DNGRG P DLH +      EV +T LHAGGKF+ KSY VSGGLHGV
Sbjct: 64  IDVTILADNGVRVIDNGRGFPVDLHPKLKKPGVEVALTVLHAGGKFDSKSYAVSGGLHGV 123

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ +++ I+R+G ++  S+ + +   PL   G     TGT V+F P   IF 
Sbjct: 124 GISVVNALSTRIEMEIQRDGFVWTQSYKHSVP-GPLEQ-GEKSRKTGTSVSFWPDDTIFE 181

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------SPEPREITMFYKGGIEAFVSYL 236
              +N++T+  RL+E +FLN +++I L D+R         +PRE+   Y  GI  FV +L
Sbjct: 182 TTVYNFETIYRRLQEYAFLNKNLKIVLRDERPRPESEEDTKPREVVFQYAEGIADFVRHL 241

Query: 237 DRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +  K PL +S +  +     D  S+++AM+WN+ Y E+V  F N I   +GGTH  G R+
Sbjct: 242 NATKSPLHKSVVMFEAKSEEDGSSLEVAMQWNESYGESVYTFANAINTHEGGTHEEGFRA 301

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALT  +  Y       K   R + GDD REG  +++S+K+ +P+F  QTK KL ++EV+S
Sbjct: 302 ALTTCVNKYGTDRKLLKGTDR-LSGDDIREGLAAIVSVKLVEPQFEGQTKTKLGNTEVKS 360

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+   N+ L  W + +P EAK I+ K   A+  R AA +AR L RRK +L+ +S+PGKL
Sbjct: 361 FVQRVCNEWLVDWFDRNPSEAKTIITKASAAAQARKAAAQARKLARRKSLLETSSMPGKL 420

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC   DP +SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR DK+L + E+
Sbjct: 421 ADCQSTDPSESEMFVVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDKILKNNEV 480

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             +ITALGTGI  D FDI KLRYHKII+M+DADVDG HI TLLLT  FR M  L+  G +
Sbjct: 481 QAMITALGTGI-HDDFDIEKLRYHKIILMSDADVDGQHINTLLLTLLFRMMRPLVEMGHV 539

Query: 535 YIIKPPLYGITRGKSLQYV 553
           Y+ +PPLY I   +    V
Sbjct: 540 YMSQPPLYKIKWNRKGDQV 558



 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN ++LWETT+NP TR+LL+V + DA+ AD+LFS LMG++VE RR FIQ N
Sbjct: 588 IQRYKGLGEMNYTELWETTMNPATRALLQVTLDDAATADELFSVLMGEDVETRRNFIQRN 647

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 648 AKDVRFLDI 656


>gi|239637290|ref|ZP_04678277.1| DNA gyrase, B subunit [Staphylococcus warneri L37603]
 gi|239597127|gb|EEQ79637.1| DNA gyrase, B subunit [Staphylococcus warneri L37603]
          Length = 640

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 297/592 (50%), Positives = 406/592 (68%), Gaps = 6/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD I VT+  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  ADEINVTIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++ + R   IY  ++  G+    L   GS  + TGT + F   S 
Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEIGST-DKTGTAIRFKADSS 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP-REITMFYKGGIEAFVSYLDR 238
           IF+    +NY+TLQ R+REL+FLN  +QI+L D+R  +  R+ +  Y+GGI+++V  L+ 
Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLTDERDEDDIRQDSYHYEGGIKSYVEMLNE 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR
Sbjct: 239 NKEPIHGEPIYIHQSKDDIEVEIAIQYNKGYSTNLLTYANNIHTYEGGTHEDGFKRALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY   S   K+DK  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+ 
Sbjct: 299 VLNSYGMNSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P   +IIV+K + AS  R AA++AR++TRRK  L+I+SLPGKLADCS
Sbjct: 359 LFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++P++SE+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI ++I
Sbjct: 419 SKNPEESEIFLVEGDSAGGSTKSGRDSSTQAILPLRGKILNVEKARLDRILNNNEIRSMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PPLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 538 PPLYKLTQGKQKYYVFNDRELDKLKAELNPTPKWSIARYKGLGEMNADQLWE 589



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + +  
Sbjct: 507 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE- 564

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ RS+L+V + DA  AD  F  LMGD 
Sbjct: 565 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVTLEDAIDADQTFEMLMGDV 621

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 622 VENRRQFIEDNAVYANLD 639


>gi|160893407|ref|ZP_02074192.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50]
 gi|156864802|gb|EDO58233.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50]
          Length = 638

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 286/585 (48%), Positives = 406/585 (69%), Gaps = 4/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YDA+ IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L GY + I V
Sbjct: 2   SNNYDAEQIQVLEGLEAVRKRPGMYIGSTS-TRGLHHLVYEIVDNSVDEALAGYCNHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N D S TV DNGRGIP  + ++ G SA EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  FINPDNSITVVDNGRGIPVGIQEKTGKSALEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ + R+G++Y+ ++  G +D+ L +   A  + +GT+VTFLP   IF   
Sbjct: 121 VVNALSEWLEVEVTRDGHVYKQTYKRGNVDSTLQIIADAPEDKSGTKVTFLPDKTIFDDW 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            ++YDTL+ RLRE +FL   ++I+L D R   P+E    Y+GGI+ FV Y++RH++ L  
Sbjct: 181 IYDYDTLRTRLRETAFLTKGLKITLTDLRVDPPKERHFHYEGGIKEFVEYMNRHREALYD 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +D + +++AM+ ND Y+E +  + NNI   +GGTHL+G +SA+T+    Y  
Sbjct: 241 KVIYCEGLKDGVYVEVAMQHNDSYNEMIHSYVNNINTPEGGTHLTGFKSAITKIFNDYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K+ + ++ G+D REG ++++S+K+ +P+F  QTK+KL +SEVR VVE+ V++ L+
Sbjct: 301 KNNLLKEKEDNLSGEDLREGMSAIVSVKIGEPQFEGQTKQKLGNSEVRPVVENIVSEQLT 360

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AKII+ K + A   R AARRARD+ R+  + D  +LPGKLADCS++DPK  
Sbjct: 361 YFLEQNPNIAKIIINKSVMAQRARIAARRARDVARKANLADNMALPGKLADCSDKDPKNC 420

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK+ RSR  QAILPLRGKILNVE+AR D++L + EI  +ITA GTGI
Sbjct: 421 EIYIVEGDSAGGSAKKARSRATQAILPLRGKILNVEKARIDRILENAEIKAMITAFGTGI 480

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            ++ FDI+KLRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI  G +Y+ +PPLY + 
Sbjct: 481 HEN-FDIDKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQPPLYKLE 539

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + K + Y   ++ L   L      +          G +    L  
Sbjct: 540 KNKKIWYAYSDDELNSILNEVGRDQSNKIQRYKGLGEMDAEQLWE 584



 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 19/113 (16%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760
             L  +    KI        L++I +   +  S  +QRYKGLGEM+A QLWETT++P+ R
Sbjct: 533 PPLYKLEKNKKIWYAYSDDELNSILNEVGRDQSNKIQRYKGLGEMDAEQLWETTMDPEKR 592

Query: 761 SLLRVKITDASQADD---------LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LL+V       A D          F+ LMGD+VEPRR+FI+ N+     LDI
Sbjct: 593 ILLKV-------AIDDDDESEIDMTFNVLMGDKVEPRRQFIETNAKFVKNLDI 638


>gi|325663387|ref|ZP_08151837.1| DNA gyrase subunit B [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470841|gb|EGC74071.1| DNA gyrase subunit B [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 548

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 289/546 (52%), Positives = 389/546 (71%), Gaps = 3/546 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I V
Sbjct: 2   STEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALGGYCDTIFV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N D S TV DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  SINKDNSITVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ I  EG IY+  +  G     L V G    + TGT+VTFLP ++IF   
Sbjct: 121 VVNALSVWLEVEIYNEGKIYKQRYERGKSAYQLKVVGECEADKTGTKVTFLPDAEIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y+ L+ R RE++FL  +++I L D+R  E  E T  Y+GGI+ FV YL++ K PL +
Sbjct: 181 EFDYNILKQRFREMAFLTKNLKIVLADERPEERIEKTFHYEGGIKEFVQYLNKSKTPLYE 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +D +++++AM+ ND Y +N   F NNI   +GGTH+ G R+ALT+    Y  
Sbjct: 241 QIIYCEGQKDGVAVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRNALTKTFNEYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K  + ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V+S ++  L 
Sbjct: 301 KNKLLKDSEPNLSGEDIREGLTAIISVKIQDPQFEGQTKQKLGNSEARGAVDSVLSTQLE 360

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK++++K + A   R+AAR+ARDLTRRK  L+  SLPGKLADCSE+D  K 
Sbjct: 361 IFLEQNPQVAKVVIEKSVLAQRAREAARKARDLTRRKSALEGMSLPGKLADCSEKDASKC 420

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+ ++ EI  +ITA GTGI
Sbjct: 421 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 480

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + 
Sbjct: 481 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKLE 539

Query: 546 RGKSLQ 551
           + KS+ 
Sbjct: 540 KTKSMV 545


>gi|28209863|ref|NP_780807.1| DNA gyrase subunit B [Clostridium tetani E88]
 gi|28202298|gb|AAO34744.1| DNA gyrase subunit B [Clostridium tetani E88]
          Length = 637

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 291/589 (49%), Positives = 401/589 (68%), Gaps = 7/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +   YD   IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DN+IDE+L GY D
Sbjct: 2   EQDKKQKYDESQIQVLEGLEAVRKRPGMYIGST-GARGLHHLVYEIVDNSIDEALAGYCD 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I + +N D S T+ DNGRG+P  LH +      EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 61  KIDIYINEDNSITIEDNGRGMPVGLHPKMNKPTVEVIMTILHAGGKFGGGGYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALSS  ++ +KR+G ++   +  GI    L   G      GT+  F P   IF
Sbjct: 121 VGASVVNALSSECRVEVKRDGYVWRQVYEKGIAVTGLEKIGETSQH-GTKTYFKPDPTIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +F YD L  RLRE++FLN  + I++ DKR  +       Y+GGI++FV YL+R K+ 
Sbjct: 180 DELEFEYDVLVQRLREMAFLNKGINITIEDKRVDKK--EDFHYEGGIKSFVLYLNRTKEV 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L + PI I+G +D   +++++++NDGY EN+  F NNI   +GGTHL+G +SA+TR    
Sbjct: 238 LHKEPIYIEGMKDEHMVEISIQYNDGYAENIFSFANNISTIEGGTHLAGFKSAVTRAFND 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +    K++ +++ G+D REG T+++S+K+ DP+F  QTK KL +SEVR +V++ V +
Sbjct: 298 YARRYGFLKENDKNLAGEDIREGITAIISVKLIDPQFEGQTKTKLGNSEVRGIVDTIVGE 357

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           G+  +LEE+P  AK I+ K L A+  R+AAR+ARDLTRRK VL+  SLPGKLADCS +DP
Sbjct: 358 GVGNFLEENPQIAKSIIDKTLMAARAREAARKARDLTRRKSVLESTSLPGKLADCSSKDP 417

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           K+ E+++VEGDSAGGSAKQGR+R  QAILPLRGKI+NVE+ R DK+L+S  I ++ITA G
Sbjct: 418 KECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILNSDTIKSMITAFG 477

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG+D FD+ K+RY++IIIMTDADVDGAHIRTLLLTFF+R M  L+ NG +YI +PPLY
Sbjct: 478 AGIGKD-FDVEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVENGHVYIAQPPLY 536

Query: 543 GITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRN 589
            +++ +   YV  +  LE+ L       ++         G ++   L +
Sbjct: 537 KVSKDRKEHYVYTDRELEEILDEIGGRDNKTQIQRYKGLGEMNAEQLWD 585



 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  +  + + +        K +       + ++      V    +    
Sbjct: 452 IMNVEKQRLDKILNSDTIKSMITAFGAGIGKDFDVEKIRYNRIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F +    + + +  +      +  +  +  +  +     L + +  IG +     +QR
Sbjct: 512 LTFFYRYMKELVENGHVYIAQPPLYKVSKDRKEHYVYTDRELEEILDEIGGRDNKTQIQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL- 797
           YKGLGEMNA QLW+TT+NPD R LLR  I DA  AD++F+ LMGD+V+ RREFIQEN+  
Sbjct: 572 YKGLGEMNAEQLWDTTMNPDKRILLRATIEDAMAADEIFTILMGDKVDLRREFIQENAKT 631

Query: 798 PSALDI 803
              LD+
Sbjct: 632 VVNLDV 637


>gi|193216997|ref|YP_002000239.1| DNA gyrase subunit B [Mycoplasma arthritidis 158L3-1]
 gi|193002320|gb|ACF07535.1| DNA gyrase subunit B [Mycoplasma arthritidis 158L3-1]
          Length = 647

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 253/599 (42%), Positives = 366/599 (61%), Gaps = 14/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   + S Y A +IQ+L+GL+AV+KRP MYIG   G  GLHH+I+E++DN++DE++ G+
Sbjct: 1   MSKQEEISKYGAKNIQVLEGLEAVRKRPGMYIGSI-GFRGLHHLIWEIVDNSVDEAMAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ +    V DNGRG+P D+H     SA E I+T LHAGGKF+  +YKVSGGL
Sbjct: 60  ATNIEVKLHPNNEIEVIDNGRGMPVDIHPTTKKSAVETILTVLHAGGKFDSTNYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178
           HGVG SVVNALS   ++ +KR G +Y   +IN G    PL V G    ++TGT + F P 
Sbjct: 120 HGVGASVVNALSDSFEVWVKRGGKLYYQKYINGGHPVKPLEVIGEVNKDETGTRIKFHPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I     F++ T+    +++++LN  + IS   +   +       ++GGI  +VS L+R
Sbjct: 180 YQIMDKVAFDFGTIIDHAKQIAYLNKGLSISC--EDITKNTIRNFCFEGGIIDYVSELNR 237

Query: 239 HKKPLMQSPIRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            KK ++   I  +G+         ++ +++A+++N+ Y  N++ + NNI   +GGTH  G
Sbjct: 238 GKKVIIPDIIYAEGTFRDKTPNAQDVIVNVAIQYNETYTSNIVSYANNIQTGEGGTHEQG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
              ALTR    Y E +   K +   +  +D ++G  +++SIK  DP F  QTK KL + +
Sbjct: 298 FYDALTRIYNKYAEDNKLFKNNNEKISREDTKDGLVAIISIKHTDPIFEGQTKGKLENKD 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            R      +++ L  ++ E+P  AK I++K L     R AA  AR+ +R+K   +  +LP
Sbjct: 358 ARIATNKIISEQLERYMAENPSHAKAIIEKCLLTQRSRLAANAAREASRKKEGSEFGNLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS ++ +  ELF+VEG+SAGGSAK GR R  QAILPLRGKI+N E+  F  ++S+
Sbjct: 418 GKLADCSSKNAEVRELFIVEGNSAGGSAKMGRDRATQAILPLRGKIINAEKQDFTSVMSN 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +E+ ++I ALGTGI  D F+INKL+YHKI+IMTDADVDGAHI TLLLTFF+R M  LI  
Sbjct: 478 KEVSSMIHALGTGI-TDEFNINKLKYHKIVIMTDADVDGAHIATLLLTFFYRYMRPLIEY 536

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           GF+YI +PPLY I+  K  +Y  ++   E+ L     S+ I        G +    L  
Sbjct: 537 GFVYIAQPPLYKISTAKVTEYAYNDAQKEEILSKLEDSKNISIQRYKGLGEMDPEQLWE 595



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             +L  +     K IS+QRYKGLGEM+  QLWETT+NP TR +L+V+I D +  D +FS 
Sbjct: 565 EEILSKLEDS--KNISIQRYKGLGEMDPEQLWETTMNPATRKMLQVQIDDIASCDTIFST 622

Query: 780 LMGDEVEPRREFIQENSLPS-ALD 802
           LMG+E+EPR +FIQEN+  +  +D
Sbjct: 623 LMGEEIEPRHDFIQENAKYATNID 646


>gi|217965929|ref|YP_002351607.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23]
 gi|217335199|gb|ACK40993.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23]
 gi|307569529|emb|CAR82708.1| DNA gyrase, B subunit [Listeria monocytogenes L99]
          Length = 646

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 289/597 (48%), Positives = 401/597 (67%), Gaps = 11/597 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L++ + REG  Y   F  G +   +   G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IF+    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S+ +   ++ L+ ++ E+P  AK IV+K + AS  R AA+RAR++ R+   L+I+SLPGK
Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P+ SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++L+++E
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+ TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G+
Sbjct: 479 IRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +YI +PPLY I  GK ++YV  +  LEDYL +     +         G ++   L N
Sbjct: 538 IYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWN 594



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 5/218 (2%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           +  + QA++     + N E  +   +    ++      +  
Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 488

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +  S +    L+      V    +        +      + +  I      +  +
Sbjct: 489 GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQI 548

Query: 708 ICNGDKIKITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
                   +     L D + S  G    S+QRYKGLGEMN  QLW TT+NP+ R+LL+V 
Sbjct: 549 KHGKQVEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWNTTMNPEHRTLLQVN 608

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           I DA  AD+ F  LMGD VEPRR+FI++N+     LD+
Sbjct: 609 IKDAIDADETFEMLMGDRVEPRRKFIEDNAQYVKNLDV 646


>gi|116332686|ref|YP_794213.1| DNA gyrase, B subunit [Lactobacillus brevis ATCC 367]
 gi|116098033|gb|ABJ63182.1| DNA gyrase subunit B [Lactobacillus brevis ATCC 367]
          Length = 647

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 289/598 (48%), Positives = 401/598 (67%), Gaps = 11/598 (1%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D  +        YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE
Sbjct: 1   MADEKETKAQQAREYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIVDNGIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I VT+N D S TV+DNGRGIP  + K+ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFADEIHVTVNQDNSITVTDNGRGIPIGIQKKTGKPALETVFTILHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEV 173
           VSGGLHGVG SVVNALS+ L+ ++ R+G  Y ++F +G +  P+ V       +  GT V
Sbjct: 120 VSGGLHGVGASVVNALSTDLEAQVTRDGKTYAIAFDHGHVKTPMHVIKEGLPQDQHGTAV 179

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            FLP  DIF     F+  TL  R+REL+FLN  ++I++ D+R  +P E    Y+GGI  +
Sbjct: 180 HFLPDPDIFRETTVFDIKTLTTRIRELAFLNKGLRITIRDERPEKPTEEDFLYEGGIRHY 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K+ L + PI ++G  + I++++A+++ D YH N+L FTNNI   +GGTH  G 
Sbjct: 240 VDYLNENKETLFEPPIYVEGQENGITVEVALQYTDDYHNNLLTFTNNIHTYEGGTHEEGF 299

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           + ALTR +  Y  ++   K ++ ++ GDD REG T+V+S+K PDP+F  QTK KL +S+ 
Sbjct: 300 KRALTRVVNDYARQNKLMKDNEANLTGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDA 359

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+ V+    D    ++ EHP  A+ IV K   AS  R AA+RAR++TR+K  L+I++LPG
Sbjct: 360 RTAVDHTFADHFMRFMMEHPDVARKIVDKGTLASKARVAAKRAREVTRKKSGLEISNLPG 419

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLAD + +DP+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+++
Sbjct: 420 KLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANE 479

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI +L TA+GTG G D FD++K+ YHK+I+MTDADVDGAHIRTLLLT  +R M  L+  G
Sbjct: 480 EIRSLFTAMGTGFGND-FDVSKVNYHKLILMTDADVDGAHIRTLLLTLVYRYMRPLLDAG 538

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           F+YI  PPLY + +GK  +Y+  +E L+D L     S +         G +    L  
Sbjct: 539 FVYIACPPLYRVRQGKMQRYLDSDEELKDLLGQLPPSPKPQIQRYKGLGEMDAEQLWE 596



 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 53/69 (76%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QRYKGLGEM+A QLWETT+NP+ R LLRV   DA  AD +F+ LMGD+V PRREFI+ 
Sbjct: 579 QIQRYKGLGEMDAEQLWETTMNPENRRLLRVDAQDAINADQVFTMLMGDKVAPRREFIEN 638

Query: 795 NSLPSALDI 803
           N+  + LD+
Sbjct: 639 NATFAELDV 647


>gi|315650187|ref|ZP_07903262.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
           saburreum DSM 3986]
 gi|315487544|gb|EFU77852.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
           saburreum DSM 3986]
          Length = 650

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 287/589 (48%), Positives = 395/589 (67%), Gaps = 5/589 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   N+ Y A  IQIL+GL+AV+ RP MYIG      GLHH++YE++DN++DE+L G+  
Sbjct: 11  ECSMNTEYGASQIQILEGLEAVRVRPGMYIGSISS-RGLHHLVYEIVDNSVDEALAGFCT 69

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++N D S TV DNGRGIP D+ K+ GI A EV+ T LHAGGKF    YK SGGLHG
Sbjct: 70  EIEVSINEDNSITVKDNGRGIPVDIQKKAGIPALEVVFTILHAGGKFGGGGYKTSGGLHG 129

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDI 181
           VG SVVNALS+WL +++ R+G +Y M F  G +   + V G      TGTEV+FLP + I
Sbjct: 130 VGASVVNALSTWLDVKVYRDGKVYHMRFEKGKVVEKIEVIGECDPQKTGTEVSFLPDAGI 189

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    +++D L+ RLRE +FL  +++I+LID R  + +  +  Y+GGI+ FV+YL++ K 
Sbjct: 190 FEETVYDFDILKIRLRETAFLTKALKITLIDNREEKRKM-SFHYEGGIKEFVTYLNKGKV 248

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ +  I  +G+++ + +++AM+ ND Y E++  F NNI   +GGTHLSG ++ALT+   
Sbjct: 249 PIYEDVIYCEGTKEKVMVEVAMQHNDNYSESIYTFVNNINTPEGGTHLSGFKNALTKTFN 308

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y   +   K    ++ G+D REG  +++S+K+ DP+F  QTK+KL +SE ++ V S V+
Sbjct: 309 EYARSNKLLKDSDENLSGEDIREGLVAIISVKIEDPQFEGQTKQKLGNSEAQTAVNSIVS 368

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ +LE++P  AKII +K + A   R AAR+ARDLTRRK  LD  SLPGKLADCS ++
Sbjct: 369 EQLTYFLEQNPTVAKIISEKAITAQRARAAARKARDLTRRKSALDNMSLPGKLADCSSKN 428

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PK+ E+F+VEGDSAGGSAK  R R+ QAILPLRGKILNVE+AR DK+ S+ EI  +ITA 
Sbjct: 429 PKECEIFIVEGDSAGGSAKGARRRDTQAILPLRGKILNVEKARLDKIYSNAEIKGMITAF 488

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGI  D FDI KLRY+KIIIMTDADVDGAHI TL+LTF +R MP LI  G +Y+ +PPL
Sbjct: 489 GTGI-HDDFDITKLRYNKIIIMTDADVDGAHIDTLMLTFIYRFMPELIKEGHVYLAQPPL 547

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           Y + + K + Y   +E L + L      +          G +    L  
Sbjct: 548 YKLEKNKKVWYAYSDEELNNILKEVGRDQNNKIQRYKGLGEMDAEQLWE 596



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760
             L  +    K+        L+ I     +  +  +QRYKGLGEM+A QLWETT++P+ R
Sbjct: 545 PPLYKLEKNKKVWYAYSDEELNNILKEVGRDQNNKIQRYKGLGEMDAEQLWETTMDPERR 604

Query: 761 SLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            L +V + ++   + D +FS LMGD+V PRREFI+ N+     LDI
Sbjct: 605 VLKKVVLDESMLSETDVVFSTLMGDQVAPRREFIEANAKYVSNLDI 650


>gi|237784642|ref|YP_002905347.1| DNA gyrase subunit B [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757554|gb|ACR16804.1| DNA gyrase subunit B [Corynebacterium kroppenstedtii DSM 44385]
          Length = 682

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 272/587 (46%), Positives = 372/587 (63%), Gaps = 44/587 (7%)

Query: 1   MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++N   ++    YDA SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE+
Sbjct: 1   MAENAAENNTRHDYDASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + GYA  + VT+  DG   V D+GRGIP  +H   G    +V+MT+LHAGGKF+  SY V
Sbjct: 60  MAGYATHVDVTIMKDGGIEVVDDGRGIPVSMHPS-GAPTVQVVMTQLHAGGKFDNDSYAV 118

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG+SVVNALS+ ++  IKR+G  +  +F + I D   +V G     TGT + F 
Sbjct: 119 SGGLHGVGISVVNALSTRVEAEIKRDGYRWYQNFTDAIPDE--LVQGKKARGTGTTIRFW 176

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------- 216
           P  D+F   +F ++T+  RL+E++FLN  + I+L DKRS                     
Sbjct: 177 PDPDVFETTEFKFETIARRLQEMAFLNKGLYITLTDKRSQATETPEDADDTVEEAAAAKS 236

Query: 217 ---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + R  T  Y  G++ +V+ +++ K  +  + I      D   +++
Sbjct: 237 AEEAAADAEQKAKKSKERTETFHYPDGLKDYVASINKTKTAIHPTIITFDAKGDEHEVEV 296

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A++WN GY ++V  F N I   +GGTH  G R+ALT  +  Y  +    K  + ++ GDD
Sbjct: 297 ALQWNSGYAQSVHTFANTINTIEGGTHEEGFRAALTSLMNRYAREHKLLKDKEPNLSGDD 356

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
           CREG  +V+S+++ DP+F  QTK KL ++EV+S V+  V + +S W E +P EAKIIV K
Sbjct: 357 CREGLAAVISVRVADPQFEGQTKTKLGNTEVKSFVQKQVFENVSHWFESNPAEAKIIVNK 416

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + +S  R AAR+ARDL RRK   D+  LPGKLADC  +DP  SEL++VEGDSAGGSAK 
Sbjct: 417 AVSSSQARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPTLSELYIVEGDSAGGSAKS 476

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKILNVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKII
Sbjct: 477 GRDSMYQAILPLRGKILNVEKARLDRVLKNNEVQAIITALGTGI-HDEFDIKKLRYHKII 535

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
           +M DADVDG+HI TLLLT  FR M  L+  G +Y+ +PPLY +  GK
Sbjct: 536 LMADADVDGSHIATLLLTLLFRFMRPLVEEGHVYLAQPPLYKLKWGK 582



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
            LL      GRK I+    +QRYKGLGEMN  +LWETT++P  R L +V++ DA++AD++
Sbjct: 596 ELLAEGLEQGRK-INKDDGIQRYKGLGEMNPKELWETTMDPSIRILRQVQLEDAAKADEI 654

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI  N+     LDI
Sbjct: 655 FSVLMGDDVIARRSFITRNAKDVRFLDI 682


>gi|205373638|ref|ZP_03226441.1| DNA topoisomerase IV subunit B [Bacillus coahuilensis m4-4]
          Length = 657

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 269/661 (40%), Positives = 396/661 (59%), Gaps = 22/661 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +   Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L GY
Sbjct: 1   MAKEKKTIEYNDDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 60  GDHIKVTIHKDNSISVEDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+G +YE  F N G   + L   GS    TGT + F P +
Sbjct: 119 HGVGASVVNALSEWLVVTIKRDGIVYEQRFENGGKPASSLERMGSTK-STGTTIHFKPDT 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +FS   FNYDTL  RLRE +FL   ++I +ID+R  +       ++ GIEAFV YL+  
Sbjct: 178 TMFSTTTFNYDTLSERLRESAFLLKGMKIEIIDERFDQR--DVFHFETGIEAFVEYLNED 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    + ++G +++I ++ A ++NDG+ EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 236 KDSLH-KVVSLEGEQNSIEVEFAFQFNDGFSENILSFVNNVRTKDGGTHEAGAKTAMTRV 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG T+++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 295 FNEYARKVSILKERDKNLEGTDIREGLTAIISVRIPEELLQFEGQTKGKLGTSEARSGVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
             V++ L  +LEE+P  + +++KK + A+  R+AAR+AR+   + +K       L GKL 
Sbjct: 355 QVVSEHLQYFLEENPDTSALLIKKAIKAAQAREAARKAREDARSGKKRKKSETVLSGKLT 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +  ++EI 
Sbjct: 415 PAQSRNPERNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKLQDIFKNEEIN 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G   F++  + Y KI+IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 475 TIIHAIGAGVG-PEFNVEDVNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 533

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+D +        I       G ++ + L    
Sbjct: 534 IALPPLYKVSKGTGKKEVIEYAWTDEELKDAIKKIGRGY-IIQRYKGLGEMNADQLWET- 591

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                +D   +                      +  +     + + +A  L       E 
Sbjct: 592 ----TMDPSTRTLIRVRIDDAARAERRVTTLMGDKVEPRRKWIENNVAFGLEEDGSILEN 647

Query: 652 S 652
            
Sbjct: 648 E 648



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 5/257 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +    +    +   +     +    E  L        S+N  RN +           
Sbjct: 378 KAIKAAQAREAARKAREDARSGKKRKKSETVLSGKLTPAQSRNPERNELYLVEGDSAGGS 437

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  K      +   V N E  +  ++    ++   ++ I       ++    N D 
Sbjct: 438 AKQGRDRKFQAILPLRGKVINTEKAKLQDIFKNEEINTIIHAIGAGVGPEFNVEDVNYDK 497

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TG 718
           +V           +      F +      I + ++      +  +     K ++      
Sbjct: 498 IVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKGTGKKEVIEYAWT 557

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              L D I  IGR G  +QRYKGLGEMNA QLWETT++P TR+L+RV+I DA++A+   +
Sbjct: 558 DEELKDAIKKIGR-GYIIQRYKGLGEMNADQLWETTMDPSTRTLIRVRIDDAARAERRVT 616

Query: 779 RLMGDEVEPRREFIQEN 795
            LMGD+VEPRR++I+ N
Sbjct: 617 TLMGDKVEPRRKWIENN 633


>gi|329770365|ref|ZP_08261747.1| DNA gyrase subunit B [Gemella sanguinis M325]
 gi|328836488|gb|EGF86148.1| DNA gyrase subunit B [Gemella sanguinis M325]
          Length = 638

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 284/591 (48%), Positives = 394/591 (66%), Gaps = 7/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +  Q   Y+AD IQ+L+GL+AV+ RP MYIG T    GLHH+++E++DN+IDE+L G+
Sbjct: 1   MVEKKQMQEYNADQIQVLEGLEAVRVRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV +  D    V DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  CDTITVAIEKDNWIRVEDNGRGIPIDIQEQTGKPALEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ L+  + R+G I+ M F  G +   + V G   + TGT + F    +
Sbjct: 120 HGVGASVVNALSTNLEAYVHRDGKIHSMMFERGDVVQGITVIGET-DKTGTTIRFKADPE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     + YD L+ R+REL+FLN  + I L D+R  + +E T  Y+GG+  +V  L+ +
Sbjct: 179 IFQETTVYEYDILRTRIRELAFLNKGITIILKDEREGQEKEETFCYEGGLLEYVEMLNEN 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    I + G  +   ++++M++N GY  N+L + NNI   +GGTH SG ++ALTR 
Sbjct: 239 KDSLH-EAIYVHGEMEGKEVEISMQYNTGYASNILSYANNINTHEGGTHESGFKTALTRI 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY +K+    K+K S+ GDD REG  +++SIK P+P+F  QTK KL +SE+ ++    
Sbjct: 298 INSYGKKNK-LIKEKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKL 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++ L  +L E+P  AKIIV+K L AS  R AA++AR+ TRRK  L+  +LPGKLADCS 
Sbjct: 357 FSEELDRFLLENPKVAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPGKLADCSS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  + ELFLVEGDSAGGSAK GR+ + QAILPL+GKILNVE+ R DK+LS+ E+ +LIT
Sbjct: 417 KDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLSNDEVRSLIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG+   +I+KLRYHKI+IMTDADVDG+HIRTLLLTFFFR M  LI  G++YI +P
Sbjct: 477 AVGMGIGETL-NIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIEAGYVYIARP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PL+G+  GK   Y   +E L++ +   +  ++         G ++  +L +
Sbjct: 536 PLFGLKVGKKEYYCHTDEELKENIEKYAADKKYTVQRYKGLGEMNAEELWD 586



 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 13/193 (6%)

Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672
           +E+  I  V + +  + +  ++   +   LN    +  K           +V      V 
Sbjct: 457 VEKVRIDKVLSNDEVRSLITAVGMGIGETLNIDKLRYHK-----------IVIMTDADVD 505

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGR 731
              +      F F    + I +  +      +  L     +        L + I      
Sbjct: 506 GSHIRTLLLTFFFRYMRELIEAGYVYIARPPLFGLKVGKKEYYCHTDEELKENIEKYAAD 565

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K  ++QRYKGLGEMNA +LW+TT++P+ R + +V I DA +AD  F  LMG++VEPRR+F
Sbjct: 566 KKYTVQRYKGLGEMNAEELWDTTMDPEHRLMYKVSIDDAQRADAAFDTLMGEKVEPRRKF 625

Query: 792 IQENSLP-SALDI 803
           I+EN+L    LDI
Sbjct: 626 IEENALNVVNLDI 638


>gi|257869692|ref|ZP_05649345.1| topoisomerase IV B subunit [Enterococcus gallinarum EG2]
 gi|257803856|gb|EEV32678.1| topoisomerase IV B subunit [Enterococcus gallinarum EG2]
          Length = 674

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/663 (40%), Positives = 385/663 (58%), Gaps = 22/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     + Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+
Sbjct: 1   MAKKT--TEYNDASIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALSGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +V DNGRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 58  GNEIDVTIHKDNSISVRDNGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSSWL++ I R+G  Y+  F + G  D  L   G     TGT V F P  
Sbjct: 117 HGVGASVVNALSSWLEVSIVRDGIEYQEKFKDGGKPDGTLKKIGKTRKATGTTVRFKPDD 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF+   F+YDTL  RLRE +FL   V+I+L D+R  E ++    ++ GI+ FV YL+  
Sbjct: 177 TIFTTTKFSYDTLAERLRESAFLLRGVKITLTDER-AELQQEVFLFEEGIKEFVDYLNEE 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G+++ I +++A ++NDGY ENVL F NN+  KDGGTH  G++ ++T+ 
Sbjct: 236 KDTLTP-VVYFSGTKEAIEVEVAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKISMTKA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+ V+
Sbjct: 295 FNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPIARNAVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415
           + + + L  +L+E+   ++++V+K + A   R+AAR+AR+ +R  +K     + L GKL 
Sbjct: 355 NVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRSGKKRKKGESLLSGKLT 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 415 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 475 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 533

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    +   ++Y   ++ L            +       G ++ + L    
Sbjct: 534 IALPPLYKVSKGLGKKAVVEYAWTDDELNAVTKKIGKGY-MLQRYKGLGEMNADQLWET- 591

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                +D   +           +          +  +     + S +   L       EK
Sbjct: 592 ----TMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIESHVQFSLEEDGSILEK 647

Query: 652 SWH 654
              
Sbjct: 648 KEE 650



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 376 VRKAIKAREAREAARKAREESRSGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 436 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG- 718
           D ++           +      F +      I + ++      +  +    G K  +   
Sbjct: 496 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGLGKKAVVEYA 555

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 556 WTDDELNAVTKKIGKGYMLQRYKGLGEMNADQLWETTMDPETRTLIRVRIDDAAQAERRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+ +
Sbjct: 616 TTLMGDKVEPRRKWIESH 633


>gi|220908378|ref|YP_002483689.1| DNA gyrase subunit B [Cyanothece sp. PCC 7425]
 gi|219864989|gb|ACL45328.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7425]
          Length = 645

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 399/591 (67%), Gaps = 9/591 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y AD IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN++DE+L GY   I V
Sbjct: 2   TTNYSADQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCKNILV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            LN DGS TV+D+GRGIPTD+  + G SA E ++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  ELNPDGSVTVTDDGRGIPTDIVSKTGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSSWL+ ++ R+G ++   F  G+    L    S GN TGT + F+P ++IF+   
Sbjct: 121 VVNALSSWLEAKVWRDGKVFTQRFERGLPATDLKAQPSGGNRTGTAIQFMPDAEIFTETI 180

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+Y TL  RLREL++LN+ V+I   D      +  EP   T FY+GGI+ +VSY++  K
Sbjct: 181 EFDYKTLSGRLRELAYLNAGVKIEFRDGRLDLLKRDEPLLETYFYEGGIKEYVSYMNVDK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +PL Q  I +QG R+++ +++A++W  D Y +N+L F NNI   DGGTHL GL++ LTR 
Sbjct: 241 EPLHQEIIYVQGERNDVQVEVALQWCTDAYTDNLLGFANNIRTIDGGTHLEGLKAVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++  K    K+   ++ G++ REG T+V+S+K+P+P F  QTK KL ++EVR +V+S 
Sbjct: 301 LNNFARKRNKLKEGDPNLAGENVREGMTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +L+  P     I++K + A    +AARRAR+L RRK VL+ ++LPGKLADCS 
Sbjct: 361 VGEVLTEYLDFRPAVVDSILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP+++E+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI +LIT
Sbjct: 421 RDPREAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GI  + FD + LRYHKII MTDADVDGAHIRTLLLTFF+R    L+  G++Y+  P
Sbjct: 481 ALGLGIKGEEFDASNLRYHKIIAMTDADVDGAHIRTLLLTFFYRYQRQLVDQGYIYVACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PLY I RG++  Y  ++   +  +     +           G +    L +
Sbjct: 541 PLYKIERGRNHYYCYNDRERDQIIAGLGENARYEIQRFKGLGEMMPQQLWD 591



 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           + +  S      ++      V    +      F +  + + +    I      +  +   
Sbjct: 489 EEFDASNLRYHKIIAMTDADVDGAHIRTLLLTFFYRYQRQLVDQGYIYVACPPLYKIERG 548

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
            +            ++  +    R    +QR+KGLGEM   QLW+TT+NP+TR+L +V I
Sbjct: 549 RNHYYCYNDRERDQIIAGLGENAR--YEIQRFKGLGEMMPQQLWDTTMNPETRTLKQVTI 606

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS--LP-SALDI 803
            DA++AD +F+ LMGD V PRREFI+     L  + LDI
Sbjct: 607 EDAAEADRIFNILMGDRVAPRREFIETYGPRLNLADLDI 645


>gi|116493579|ref|YP_805313.1| DNA gyrase, B subunit [Lactobacillus casei ATCC 334]
 gi|116103729|gb|ABJ68871.1| DNA gyrase subunit B [Lactobacillus casei ATCC 334]
          Length = 653

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 287/601 (47%), Positives = 403/601 (67%), Gaps = 14/601 (2%)

Query: 1   MSDNIQNSS---------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51
           M+D  + +          YDA  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN
Sbjct: 1   MTDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDN 59

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
            IDE+L G+A  I V +N D S TV+D+GRGIP D+  + G  A E + T LHAGGKF  
Sbjct: 60  GIDEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSKTGRPALETVYTVLHAGGKFGG 119

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTG 170
             YKVSGGLHGVG SVVNALS+ L + + R G  Y + FI G ++ P+ V G+A  ++ G
Sbjct: 120 GGYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNMPMKVIGTAPEHEHG 179

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V FLP  DIF+    F+   L  R+REL+FLN  ++++  DKR+    ++   Y+GG+
Sbjct: 180 TKVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGL 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L   K+ L+Q PI ++G    I++++A+++ + YH  +L F NNI   +GGTH 
Sbjct: 240 KSYVDFLTEKKENLLQEPIYVEGQDKGITVEVALQYTNDYHSTLLTFANNIHTYEGGTHE 299

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ALTR I  Y  +S   K     + GDD REG T+V+S+K PDP+F  QTK KL +
Sbjct: 300 TGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGN 359

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           S+ R+VV+   +D  + +L EHP + K+I+ K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 360 SDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISN 419

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLAD + +DP+ SELF+VEGDSAGGSAK GRSR  QAILP+RGKILNVE+A  +++L
Sbjct: 420 LPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERIL 479

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           +++EI TL TA+GTG G   FDINK RYHK+IIMTDADVDGAHIRTLLLT  +R M  ++
Sbjct: 480 ANEEIRTLFTAMGTGFG-QDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVL 538

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLR 588
             G++YI +PPLY + +GK  QY+  +E L+D L     S +         G +  N L 
Sbjct: 539 DAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPSPKPEIQRYKGLGEMDANQLW 598

Query: 589 N 589
            
Sbjct: 599 E 599



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 3/71 (4%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QRYKGLGEM+A+QLWETT++PD R LLRV   DA  AD +F  LMGD VEPRR+FI++
Sbjct: 582 EIQRYKGLGEMDANQLWETTMDPDNRRLLRVSPKDAEAADGVFEMLMGDHVEPRRKFIED 641

Query: 795 NSLPS---ALD 802
           N++      +D
Sbjct: 642 NAVFVDPNNID 652


>gi|255012609|ref|ZP_05284735.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_7]
          Length = 620

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 273/571 (47%), Positives = 374/571 (65%), Gaps = 13/571 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDT  E GLHH++YEV+DN+IDE+L GY   I V +N D S TV+D+GRGIP D+H+
Sbjct: 1   MYIGDTS-EKGLHHLVYEVVDNSIDEALAGYCTYIDVVINEDNSITVTDDGRGIPVDIHE 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           +EG SA EV++T LHAGGKF++ +YKVSGGLHGVGVS VNALS++LK  ++R G ++   
Sbjct: 60  KEGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGVGVSCVNALSTYLKAEVRRNGKVHMQE 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F  G   + + V     + TGT ++F P   IF+V ++ YD L  RLREL+FLN+ + + 
Sbjct: 120 FSCGKPLHDVQVI-DNTDKTGTTISFKPDGSIFTVTEYKYDILATRLRELAFLNAGITLR 178

Query: 210 LIDKRSPE----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           L DKR  +     +        G++ FV Y+DR K+ L+   I I   +  I +++A+ +
Sbjct: 179 LTDKRVLKEDGSFKSEVFHSDEGLKEFVRYIDRSKEKLIPDVIHIVTEKQGIPVEVALTY 238

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N  Y+E+V  + N+I   +GGTHL+G R  LTR +  Y E S   +K K  + GDD REG
Sbjct: 239 NTSYNESVFSYVNDINTIEGGTHLAGFRRGLTRTLKKYAEDSKLLEKAKVEIQGDDFREG 298

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+V+SIK+ +P+F  QTK KL +SEV   V+  + + L  +LEEHP EAKIIV KV+ A
Sbjct: 299 LTAVISIKVAEPQFEGQTKTKLGNSEVTGAVDMAIGEALGYYLEEHPKEAKIIVDKVILA 358

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+AR+L +RK  L    LPGKLADCS +D    ELFLVEGDSAGG+AKQGR R
Sbjct: 359 AQARHAARKARELVQRKSPLTGGGLPGKLADCSSKDAAICELFLVEGDSAGGTAKQGRDR 418

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKII 501
             QAILPLRGKILNVE+A   K+  S+EI  +  A+G  +G +      ++ KLRYHK+I
Sbjct: 419 NFQAILPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKVI 478

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           IMTDADVDG+HI TL+LTFFFR+M SLI NG++Y+  PPLY   +GK  +Y   E+  + 
Sbjct: 479 IMTDADVDGSHIATLILTFFFRRMRSLIENGYVYLATPPLYLCKKGKVEEYCWTEQQRQQ 538

Query: 562 YLINQSLSEEIELFC---DSKGVISKNDLRN 589
           +++      E  +        G ++ + L +
Sbjct: 539 FILKYGGGNENSIHTQRYKGLGEMNDHQLWD 569



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A+   +F  E  Q I  ++   +    +  A   EK  +  +    I+
Sbjct: 424 LPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKV----II 479

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGD-KIKITG 718
           +            L  +  F       R   + IE  Y+      L L   G  +     
Sbjct: 480 MTDADVDGSHIATLILTFFF-------RRMRSLIENGYVYLATPPLYLCKKGKVEEYCWT 532

Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                  I   G      I  QRYKGLGEMN  QLW+TT+NP+ R+L ++ I +A++AD 
Sbjct: 533 EQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIDNAAEADQ 592

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802
           +F+ LMG++V PRREFI+EN+  + +D
Sbjct: 593 IFAMLMGEDVGPRREFIEENATYANID 619


>gi|319939072|ref|ZP_08013436.1| DNA topoisomerase 4 subunit B [Streptococcus anginosus 1_2_62CV]
 gi|319812122|gb|EFW08388.1| DNA topoisomerase 4 subunit B [Streptococcus anginosus 1_2_62CV]
          Length = 649

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 273/649 (42%), Positives = 393/649 (60%), Gaps = 19/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT++ DGS TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDKIDVTIHKDGSLTVADHGRGMPVGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y   F   G     L   G A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYRQRFEKGGKPVTSLEKIGKAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL E +FL  +V +SL D+R+ E   +   Y+ G++ FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTISERLNESAFLLKNVHLSLTDERTGES--VDFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      +++A+++NDGY +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEEGGFQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRSGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGSD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  LED          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRKKFGKGAMLQRYKGLGEMNADQLWET 594

Query: 590 FI--DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +  ++   I   I D      +  +             +  +  +L  
Sbjct: 595 TMNPENRTLIRVTIDDLARAERRVNVLMGDKVPPRRKWIEDNVKFTLEE 643



 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 55/73 (75%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L+ +     KG  +QRYKGLGEMNA QLWETT+NP+ R+L+RV I D ++A+   + LMG
Sbjct: 564 LEDLRKKFGKGAMLQRYKGLGEMNADQLWETTMNPENRTLIRVTIDDLARAERRVNVLMG 623

Query: 783 DEVEPRREFIQEN 795
           D+V PRR++I++N
Sbjct: 624 DKVPPRRKWIEDN 636


>gi|16799085|ref|NP_469353.1| DNA gyrase subunit B [Listeria innocua Clip11262]
 gi|16412427|emb|CAC95239.1| DNA gyrase subunit B [Listeria innocua Clip11262]
          Length = 646

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 289/597 (48%), Positives = 402/597 (67%), Gaps = 11/597 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVHESASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L++ + REG  Y   F  G +   + V G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IF+    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S+ +   ++ L+ ++ E+P  AK IV+K + AS  R AA+RAR++ R+   L+I+SLPGK
Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P+ SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++L+++E
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+ TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G+
Sbjct: 479 IRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +YI +PPLY I  GK ++YV  +  LEDYL +     +         G ++   L +
Sbjct: 538 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWD 594



 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 7/219 (3%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           +  + QA++     + N E  +   +    ++      +  
Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 488

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +  S +    L+      V    +        +      + +  I       L  
Sbjct: 489 GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIY-IAQPPLYQ 547

Query: 708 ICNGDKIK-ITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           I +G +I+ +     L D + S  G    S+QRYKGLGEMN  QLW+TT+NP+ R+LL+V
Sbjct: 548 IKHGKQIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 607

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            I DA  AD+ F  LMGD VEPRR+FI++N+     LD+
Sbjct: 608 NIKDAIDADETFEMLMGDRVEPRRKFIEDNAQYVKNLDV 646


>gi|116871428|ref|YP_848209.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740306|emb|CAK19424.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 646

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 289/597 (48%), Positives = 402/597 (67%), Gaps = 11/597 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVHESASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L++ + REG  Y   F  G +   + V G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IF+    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S+ +   ++ L+ ++ E+P  AK IV+K + AS  R AA+RAR++ R+   L+I+SLPGK
Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P+ SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++L+++E
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+ TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G+
Sbjct: 479 IRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +YI +PPLY I  GK ++YV  +  LEDYL +     +         G ++   L +
Sbjct: 538 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKDTKYSIQRYKGLGEMNPEQLWD 594



 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 7/219 (3%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           +  + QA++     + N E  +   +    ++      +  
Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 488

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +  S +    L+      V    +        +      + +  I       L  
Sbjct: 489 GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIY-IAQPPLYQ 547

Query: 708 ICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           I +G +I+ +     L D + S+ +    S+QRYKGLGEMN  QLW+TT+NP+ R+LL+V
Sbjct: 548 IKHGKQIEYVYSDGQLEDYLASLDKDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 607

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            I DA  AD+ F  LMGD VEPRR+FI+EN+     LD+
Sbjct: 608 NIKDAIDADETFEMLMGDRVEPRRKFIEENAQYVKNLDV 646


>gi|239626403|ref|ZP_04669434.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516549|gb|EEQ56415.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 639

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 259/622 (41%), Positives = 369/622 (59%), Gaps = 14/622 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y+ADSI +L+GL+AV+KRP MYIG   G  GL+H+IYE++DNA+DE L GY   +
Sbjct: 1   MAKEQYNADSITVLEGLEAVRKRPGMYIGGV-GSKGLNHLIYEIVDNAVDEHLAGYCSSV 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DGSCTV DNGRGIP  +HK+ G+SAA ++++ LHAGGKF+  +YK SGGLHGVG
Sbjct: 60  WVTLEADGSCTVRDNGRGIPVGMHKK-GLSAARIVLSTLHAGGKFDNDAYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSS 179
            SVVNALS  + +++ R+G IY   +  G     L      V G    +TGT + FLP  
Sbjct: 119 SSVVNALSEHMDVKVYRDGYIYHDEYEKGKPIIKLENGLLPVVGKT-RETGTRINFLPDG 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           DIF    F  + L+ RL E ++LN  + I   +KR+ E  +IT     GI A+V  L+  
Sbjct: 178 DIFEKTRFKAEWLKSRLHETAYLNPMLTICYENKRAGENEKITYHEPEGIIAYVKELNTG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +   PI  +G+ D I ++ A+++ D + EN+L F NNI  ++GGTHL+G ++  T  
Sbjct: 238 KAAVH-DPIYFKGTVDRIEVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKTKFTAL 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY  +    K+   +  G D R G T+V++IK PDP F  QTK K+ S++    V + 
Sbjct: 297 INSYARELGILKEKDTNFTGADTRNGMTAVVAIKHPDPIFEGQTKTKMASADATKAVFTV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             D L  + + +    K ++     ++ +R A  +A+     K      S  GKLA+C  
Sbjct: 357 TGDELQLYFDRNVEVLKGVIACAEKSARIRRAEEKAKTNMLTKSKFSFDS-NGKLANCES 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RD  K E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I 
Sbjct: 416 RDADKCEIFIVEGDSAGGSAKTARNRRYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
             G G  +   + FDI KLRY+KII+MTDADVDG+HI TLLLTF +R MP LI++G +YI
Sbjct: 476 TFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYI 535

Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
             PPL+  I +    QY+ DE+ LE Y    +    ++ +     + ++      +D   
Sbjct: 536 AMPPLFKVIPKRGEEQYLYDEKELERYRKTHTGDFTLQRYKGLGEMDAEQLWETTLDPER 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
           ++ K ++           E  +
Sbjct: 596 RVLKRVEIEDARMASEITEMLM 617



 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 17/206 (8%)

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             +        +   + N E      V   +++   +N       + +    + + +   
Sbjct: 441 RRYQAIL---PIRGKILNVEKASMDKVLANAEIKTMINTFGCGFSEGYGNDFDITKLRYN 497

Query: 666 RIAR----GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPC 720
           +I       V    +      F +    + I+   +      +  +I   G++  +    
Sbjct: 498 KIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYIAMPPLFKVIPKRGEEQYLYDEK 557

Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
            L        RK      ++QRYKGLGEM+A QLWETTL+P+ R L RV+I DA  A ++
Sbjct: 558 EL-----ERYRKTHTGDFTLQRYKGLGEMDAEQLWETTLDPERRVLKRVEIEDARMASEI 612

Query: 777 FSRLMGDEVEPRREFIQENSLPSALD 802
              LMG EV PRR FI E++  + +D
Sbjct: 613 TEMLMGSEVAPRRTFIYEHADEAEID 638


>gi|289551838|ref|YP_003472742.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|289181369|gb|ADC88614.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01]
          Length = 640

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 297/641 (46%), Positives = 416/641 (64%), Gaps = 6/641 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  ADQIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F   S+
Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNETIYHQAYKKGVPQFDLKEVGET-DKTGTVIRFKADSE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238
           IF+    ++YDTLQ R+REL+FLN  + I+L D+R  E +      Y+GGI+++V  ++ 
Sbjct: 179 IFTETTVYDYDTLQKRIRELAFLNKGISITLKDERDDEEQREDTYHYEGGIKSYVELMNE 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+P+ + PI I   +D+I I++A+++N GY  N+L + NNI   +GGTH  G + ALTR
Sbjct: 239 NKEPIHEEPIYIHQMKDDIEIEIAIQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY  KS   K+DK  + G+D REG T+V+SIK  DP+F  QTK KL +SEVR VV+ 
Sbjct: 299 VLNSYGTKSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDK 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P  A+IIV+K + AS  R AA++AR++TRRK  L+I+SLPGKLADCS
Sbjct: 359 LFSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISSLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++P +SE+F+VEGDSAGGS K+GR    QAILPLRGKILNVE++R D++L++ EI  +I
Sbjct: 419 SKNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRQMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKI 597
           PPL+ +T+GK   YV +++ L+      S +           G ++ + L     +    
Sbjct: 538 PPLFKLTQGKQKYYVFNDKELDKLKSELSPTPKWQISRYKGLGEMNADQLWETTMNPDNR 597

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
             L        +     + ++  V         + ++ + L
Sbjct: 598 MMLQVRLDDAIEADKTFEMLMGDVVENRRQFIEDNAVYATL 638



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 32/287 (11%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            +      +++ +  ++   ++ + + +    +       +++      I          
Sbjct: 358 KLFSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISSLPGKLADC 417

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI---- 657
               P+  + FI +   +G    E       ++       LN    + ++  + +     
Sbjct: 418 SSKNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRQM 477

Query: 658 ---------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
                       DI   R  +        V    +      F +      I +  +    
Sbjct: 478 ITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTL 755
             +  L     K  +      LD + S     +S      + RYKGLGEMNA QLWETT+
Sbjct: 538 PPLFKLTQGKQKYYVFNDKE-LDKLKSE----LSPTPKWQISRYKGLGEMNADQLWETTM 592

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           NPD R +L+V++ DA +AD  F  LMGD VE RR+FI++N++ + LD
Sbjct: 593 NPDNRMMLQVRLDDAIEADKTFEMLMGDVVENRRQFIEDNAVYATLD 639


>gi|153855242|ref|ZP_01996408.1| hypothetical protein DORLON_02422 [Dorea longicatena DSM 13814]
 gi|149752241|gb|EDM62172.1| hypothetical protein DORLON_02422 [Dorea longicatena DSM 13814]
          Length = 678

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 257/621 (41%), Positives = 361/621 (58%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YDA SI IL+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY   I 
Sbjct: 41  KKNTYDAGSIAILEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGYCSEIH 99

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGS T++DNGRG+P DLH   G+SAA V+ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 100 VTLEKDGSATIADNGRGVPVDLHA-TGVSAARVVYTTLHAGGKFDDSAYKTSGGLHGVGS 158

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS+++ ++I R+G I+   +  G     L        G     TGT+V FLP   
Sbjct: 159 SVVNALSTYMDVQISRDGYIHHDRYEQGKPVIELEDGLLPTIGKT-RKTGTKVNFLPDDT 217

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + ++ RL E ++LN  ++I   DKR  EP +I      GI  F+  L+  K
Sbjct: 218 IFEKTKFKAEEVKSRLHETAYLNPDLKIVFEDKRGAEPEQIIYHEPDGILGFIRELNHKK 277

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +   P+  +G  + I +++A ++ + +HENVL F NNI   +GGTHL+G ++  T  I
Sbjct: 278 EVVH-DPVYFKGEAEGIEVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTAI 336

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +         
Sbjct: 337 NQYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAAKACSKVT 396

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ND +  + + +    K ++     A+ +R    RA+     K      S  GKLA+C  R
Sbjct: 397 NDEIIRFFDRNLETLKKVIGCAEKAAKIRKTEERAKTNLLTKQKYSFDS-NGKLANCESR 455

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 456 DASKCEIFIVEGDSAGGSAKTARDRMFQAILPIRGKILNVEKASIDKVLANAEIKTMINA 515

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI  G +YI 
Sbjct: 516 FGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIFEGHVYIA 575

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY    +    +Y+ D+++LE Y         ++ +     + ++      ++   +
Sbjct: 576 MPPLYKAMPKKGEEEYLYDDKALEKYRKTHDGPFTLQRYKGLGEMDAEQLWETTLNPETR 635

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           + KL++        +  E  +
Sbjct: 636 LLKLVEIEDARMASSVTEMLM 656



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 50/69 (72%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTLNP+TR L  V+I DA  A  +   LMG EV PRR FI E
Sbjct: 610 TLQRYKGLGEMDAEQLWETTLNPETRLLKLVEIEDARMASSVTEMLMGSEVPPRRSFIYE 669

Query: 795 NSLPSALDI 803
           N+  + LDI
Sbjct: 670 NATEAELDI 678


>gi|222152812|ref|YP_002561989.1| DNA gyrase subunit B [Streptococcus uberis 0140J]
 gi|222113625|emb|CAR41503.1| DNA gyrase subunit B [Streptococcus uberis 0140J]
          Length = 650

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 284/625 (45%), Positives = 403/625 (64%), Gaps = 11/625 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M D  +N       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MIDENKNLEENVQEYDASQIQVLEGLEAVRMRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATHIEVFIEEDNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +R+ + GNI+   F  G++ + L + GS  + TGT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVRVYKNGNIHFQEFKRGVVVDDLTIIGST-DLTGTTVHF 178

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+   +FNYD L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V 
Sbjct: 179 TPDPEIFTETVEFNYDKLAKRIQELAFLNRGLRISIADKRKGIEQNHDFHYEGGISSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+  K  ++++PI   G  D I++++AM++  GYHENV+ F NNI   +GGTH  G R+
Sbjct: 239 YLNEKKDVIIETPIYTDGEMDGIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++    +L E+P  A+ IV K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D  ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD+ K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGSD-FDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++     +   +       + E      SK  + +      +DD 
Sbjct: 538 YIAQPPIYGVKVGNEIKQYI--QPGINQETELQEALEKYSVGRSKPSVQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVIS 619
              +  +        +  ++ A  +
Sbjct: 596 QLWETTMDPENRLMARVTVDDAAEA 620



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/90 (52%), Positives = 63/90 (70%), Gaps = 2/90 (2%)

Query: 716 ITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I     L + +    +GR   S+QRYKGLGEM+  QLWETT++P+ R + RV + DA++A
Sbjct: 561 INQETELQEALEKYSVGRSKPSVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEA 620

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D +F  LMGD VEPRREFI+EN++ S LDI
Sbjct: 621 DKVFDMLMGDRVEPRREFIEENAVYSTLDI 650


>gi|297739950|emb|CBI30132.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/597 (44%), Positives = 372/597 (62%), Gaps = 12/597 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  + +Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  G+A 
Sbjct: 59  ESTSSKAYGSEQIQVLEGLDPVRKRPGMYIGST-GLRGLHHLVYEILDNAIDEAQAGFAS 117

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120
            + V L  D S +++DNGRGIPT+LH     S+ E ++T LHAGGKF   S  Y VSGGL
Sbjct: 118 KVDVVLLADDSVSITDNGRGIPTELHPVTKKSSLETVLTVLHAGGKFGGASSGYSVSGGL 177

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ + R+G  Y+  +  G     L        + +  GT + F P
Sbjct: 178 HGVGLSVVNALSEALEVTVWRDGMEYQQKYSRGKPVTSLTHRVLPTESTDLQGTHIRFWP 237

Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGIEAFVS 234
             ++F+    F+Y+T+  R+REL+FLN  + I+L  +     + +     Y GG+  +V 
Sbjct: 238 DKEVFTTEIQFDYNTIAGRIRELAFLNPELAITLRKEDKDPEKNQYNEYCYAGGLVEYVR 297

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+  KKP+       +   D ISID+A++W  D Y + +L + N+I   DGGTH+ G++
Sbjct: 298 WLNTDKKPVHDVVG-FRKVADGISIDVALQWCSDAYSDTMLGYANSIRTIDGGTHIDGMK 356

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR + +  +KS   K+   ++ G+  REG T V+S+K+P+P F  QTK +L + EVR
Sbjct: 357 ASLTRTLNNLGKKSKIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVR 416

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            VV+  V + L+ +LE HP    +I+ K L+A     AA+RAR+L R+K VL  +SLPGK
Sbjct: 417 KVVDQTVQEFLTEYLELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGK 476

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  +P++SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  S+E
Sbjct: 477 LADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKSEE 536

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  LI  LG G+  + F    LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L   G 
Sbjct: 537 IQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGC 596

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +Y+  PPL+ + RGK + Y  D+  L+    +   +           G +    L  
Sbjct: 597 IYVGVPPLFKVERGKQVHYCYDDAELKQLQHSLPPNASYSIQRFKGLGEMMPVQLWE 653



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 127/335 (37%), Gaps = 33/335 (9%)

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556
           KII   D  + G H+R  L      ++P+    G        P +  +      +++ + 
Sbjct: 371 KIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQTVQEFLTEY 430

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKT 611
             L   +++  LS+ +     +       +L  +  +  +  +   + D     P   + 
Sbjct: 431 LELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESEI 490

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL-------- 663
           FI +   +G    +       ++       LN   +     +      + IL        
Sbjct: 491 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKSEEIQNLILGLGLGVKG 550

Query: 664 --VKRIARGVQEQFVLEGS---------SIFSFGSKYKRIFSNR--IEENYLTILSLICN 710
              K+ A    +  +L  +          + +F  +Y+R   +   I      +  +   
Sbjct: 551 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLFKVERG 610

Query: 711 GDKIKITG---PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L  ++        S+QR+KGLGEM   QLWETT++P+ R L ++ +
Sbjct: 611 KQVHYCYDDAELKQLQHSLPPNA--SYSIQRFKGLGEMMPVQLWETTMDPERRLLKQLVV 668

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            DA++A+ +FS LMG  V+ R+E IQ+++    LD
Sbjct: 669 EDAAEANVVFSSLMGARVDFRKELIQKSASTMKLD 703


>gi|225388933|ref|ZP_03758657.1| hypothetical protein CLOSTASPAR_02674 [Clostridium asparagiforme
           DSM 15981]
 gi|225044986|gb|EEG55232.1| hypothetical protein CLOSTASPAR_02674 [Clostridium asparagiforme
           DSM 15981]
          Length = 639

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 261/622 (41%), Positives = 380/622 (61%), Gaps = 14/622 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N +Y+A+SI +L+GL+AV+KRP MYIG   G  GL+H+IYE++DNA+DE L G+   +
Sbjct: 1   MANQTYNAESITVLEGLEAVRKRPGMYIGSV-GTKGLNHLIYEIVDNAVDEHLAGFCSKV 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DGSCTV DNGRGIP +LHK+ G+SA  V++  LHAGGKF+ ++YK SGGLHGVG
Sbjct: 60  WVTLEADGSCTVRDNGRGIPVELHKK-GVSAERVVLATLHAGGKFDNEAYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSS 179
            SVVNALSS + +++ R+G IY  ++  G+   PL      V G    +TGT++ FLP  
Sbjct: 119 SSVVNALSSHMDVKVYRDGCIYHDAYEKGLPVIPLENGLLPVIGKT-RETGTQINFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    F  D L+ RL E ++LN ++ I   +KRS E  +IT     GI ++V  L+  
Sbjct: 178 EIFERTRFKADWLKSRLHETAYLNPNLMIFYANKRSGESEQITYHEPEGIVSYVKELNTG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +   PI  +G+ D + +++A+++ D + EN+L F NNI  ++GGTHL+G ++  T  
Sbjct: 238 KTAVH-DPIYFKGTVDKVEVEVALQFVDTFEENILGFCNNIFTQEGGTHLAGFKTKFTAM 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY  +    K+   +  G D R G T+V+++K PDP F  QTK KL S++    V + 
Sbjct: 297 INSYARELGILKEKDANFTGADTRNGMTAVVAVKHPDPIFEGQTKTKLASADATKAVFAV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D L  + + +    K ++     ++ +R A  +A+     +      S  GKLA+C  
Sbjct: 357 VGDELQRYFDRNLEVLKGVIGCAEKSAKIRRAEEKAKTNMLTRSKFSFDS-NGKLANCES 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RD +K E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I 
Sbjct: 416 RDAEKCEIFIVEGDSAGGSAKTARNRMYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           A G G  +   + FDI KLRY+KII+MTDADVDG+HI TLLLTF +R MP LI++G +YI
Sbjct: 476 AFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYI 535

Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
             PPL+  I +    QY+ DE+ LE Y    +    ++ +     + +       +D   
Sbjct: 536 AMPPLFKVIPKKGEEQYLYDEKELERYRRTHTGDFTLQRYKGLGEMDAGQLWETTLDPER 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
           ++ K ++           E  +
Sbjct: 596 RVLKQVEIEDARMASEITEMLM 617



 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 100/256 (39%), Gaps = 16/256 (6%)

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           E++  + L     S +      +           FI +        K       +  +  
Sbjct: 390 EKAKTNMLTRSKFSFDSNGKLANCESRDAEKCEIFIVEGDSAGGSAKTARNRMYQAIL-- 447

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR----GV 671
            +   + N E      V   +++   +N       + +    + + +   +I       V
Sbjct: 448 PIRGKILNVEKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDITKLRYNKIILMTDADV 507

Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIG 730
               +      F +    + I+   +      +  +I   G++  +     L        
Sbjct: 508 DGSHIDTLLLTFLYRFMPELIYDGHVYIAMPPLFKVIPKKGEEQYLYDEKEL-----ERY 562

Query: 731 RK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
           R+      ++QRYKGLGEM+A QLWETTL+P+ R L +V+I DA  A ++   LMG EV 
Sbjct: 563 RRTHTGDFTLQRYKGLGEMDAGQLWETTLDPERRVLKQVEIEDARMASEITEMLMGSEVA 622

Query: 787 PRREFIQENSLPSALD 802
           PRREFI E++  + +D
Sbjct: 623 PRREFIYEHADEAEID 638


>gi|225441215|ref|XP_002266668.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 719

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/597 (44%), Positives = 372/597 (62%), Gaps = 12/597 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  + +Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  G+A 
Sbjct: 71  ESTSSKAYGSEQIQVLEGLDPVRKRPGMYIGST-GLRGLHHLVYEILDNAIDEAQAGFAS 129

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120
            + V L  D S +++DNGRGIPT+LH     S+ E ++T LHAGGKF   S  Y VSGGL
Sbjct: 130 KVDVVLLADDSVSITDNGRGIPTELHPVTKKSSLETVLTVLHAGGKFGGASSGYSVSGGL 189

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ + R+G  Y+  +  G     L        + +  GT + F P
Sbjct: 190 HGVGLSVVNALSEALEVTVWRDGMEYQQKYSRGKPVTSLTHRVLPTESTDLQGTHIRFWP 249

Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGIEAFVS 234
             ++F+    F+Y+T+  R+REL+FLN  + I+L  +     + +     Y GG+  +V 
Sbjct: 250 DKEVFTTEIQFDYNTIAGRIRELAFLNPELAITLRKEDKDPEKNQYNEYCYAGGLVEYVR 309

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+  KKP+       +   D ISID+A++W  D Y + +L + N+I   DGGTH+ G++
Sbjct: 310 WLNTDKKPVHDVVG-FRKVADGISIDVALQWCSDAYSDTMLGYANSIRTIDGGTHIDGMK 368

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR + +  +KS   K+   ++ G+  REG T V+S+K+P+P F  QTK +L + EVR
Sbjct: 369 ASLTRTLNNLGKKSKIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVR 428

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            VV+  V + L+ +LE HP    +I+ K L+A     AA+RAR+L R+K VL  +SLPGK
Sbjct: 429 KVVDQTVQEFLTEYLELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGK 488

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  +P++SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  S+E
Sbjct: 489 LADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKSEE 548

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  LI  LG G+  + F    LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L   G 
Sbjct: 549 IQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGC 608

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +Y+  PPL+ + RGK + Y  D+  L+    +   +           G +    L  
Sbjct: 609 IYVGVPPLFKVERGKQVHYCYDDAELKQLQHSLPPNASYSIQRFKGLGEMMPVQLWE 665



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 127/335 (37%), Gaps = 33/335 (9%)

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556
           KII   D  + G H+R  L      ++P+    G        P +  +      +++ + 
Sbjct: 383 KIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQTVQEFLTEY 442

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKT 611
             L   +++  LS+ +     +       +L  +  +  +  +   + D     P   + 
Sbjct: 443 LELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESEI 502

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL-------- 663
           FI +   +G    +       ++       LN   +     +      + IL        
Sbjct: 503 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKSEEIQNLILGLGLGVKG 562

Query: 664 --VKRIARGVQEQFVLEGS---------SIFSFGSKYKRIFSNR--IEENYLTILSLICN 710
              K+ A    +  +L  +          + +F  +Y+R   +   I      +  +   
Sbjct: 563 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLFKVERG 622

Query: 711 GDKIKITG---PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L  ++        S+QR+KGLGEM   QLWETT++P+ R L ++ +
Sbjct: 623 KQVHYCYDDAELKQLQHSLPPNA--SYSIQRFKGLGEMMPVQLWETTMDPERRLLKQLVV 680

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            DA++A+ +FS LMG  V+ R+E IQ+++    LD
Sbjct: 681 EDAAEANVVFSSLMGARVDFRKELIQKSASTMKLD 715


>gi|284051687|ref|ZP_06381897.1| DNA gyrase subunit B [Arthrospira platensis str. Paraca]
 gi|291569892|dbj|BAI92164.1| DNA gyrase B subunit [Arthrospira platensis NIES-39]
          Length = 645

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 296/646 (45%), Positives = 408/646 (63%), Gaps = 15/646 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY   I V
Sbjct: 2   TSTYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N D S  V+D+GRGIP D H + G SA E +MT LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  DINPDNSVRVTDDGRGIPIDTHSKTGRSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS W+++ + R+   Y   +  G+    L    S  + TGT V F P + IF+   
Sbjct: 121 VVNALSEWVEVTVLRDHKRYVQRYERGVPVTELEEHSSKESQTGTSVCFKPDTKIFTTGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240
           +F YDT+  RLREL++LN+ V+I+L D R       E +  +  Y+GGI+ +V+Y++R K
Sbjct: 181 EFEYDTIASRLRELAYLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + L +  I + G R+N+ +++A++W  D Y + +L F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QALHEDTIYVSGERNNVQVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +   K    K ++ ++ G++ REG T V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 MNAIARKRNKIKDNEPNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +L+ +P  A  I++K + A    +AARRARDL RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLTEFLDFNPNVADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP++SE+FLVEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI +LIT
Sbjct: 421 RDPEESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GI  + FD ++LRYHK+IIMTDADVDGAHIRTLLLTFF+R    L+  GF+YI  P
Sbjct: 481 ALGLGIKGEEFDSSQLRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVAQGFIYIACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598
           PLY + RG++  Y  +E+ L+  L     +           G +  N L +       ++
Sbjct: 541 PLYKVERGRNHYYCYNEQQLQQQLAEFPDNANYTIQRFKGLGEMMPNQLWDT-----TMN 595

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +       +   E   I  V   +             A RL+ 
Sbjct: 596 PETRSIKRVEIEDAAEADHIFTVLMGDRVAPRRQ-FIEDHAPRLDI 640



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 57/70 (81%), Gaps = 2/70 (2%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
            ++QR+KGLGEM  +QLW+TT+NP+TRS+ RV+I DA++AD +F+ LMGD V PRR+FI+
Sbjct: 573 YTIQRFKGLGEMMPNQLWDTTMNPETRSIKRVEIEDAAEADHIFTVLMGDRVAPRRQFIE 632

Query: 794 ENSLPSALDI 803
           +++    LDI
Sbjct: 633 DHAPR--LDI 640


>gi|15614703|ref|NP_243006.1| DNA topoisomerase IV subunit B [Bacillus halodurans C-125]
 gi|10174759|dbj|BAB05859.1| DNA topoisomerase IV subunit B [Bacillus halodurans C-125]
          Length = 655

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 266/660 (40%), Positives = 391/660 (59%), Gaps = 22/660 (3%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   I VT++
Sbjct: 9   YNDDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALAGYGSNINVTIH 67

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  Y  SGGLHGVG SVVN
Sbjct: 68  KDQSVSVRDEGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGASVVN 126

Query: 130 ALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           ALS WL + IKR+G +YE  F N G     L   G     TGT + F P   +FS  +FN
Sbjct: 127 ALSEWLIVEIKRDGWVYEQRFENGGKPSTTLEKKGKT-RQTGTTIHFKPDPTVFSTTNFN 185

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
            +TL  RLRE +FL   ++I L+D R  +  +    Y+ GI+AFV YL+  K+ L    +
Sbjct: 186 VETLSERLREAAFLLKGLKIELVDLR--DDTKEVFHYEDGIKAFVEYLNEDKETLHP-VV 242

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
              G  + I I+ A ++NDGY ENVL F NN+  KDGGTH  G ++A+TR +  Y  K+ 
Sbjct: 243 FFNGESNGIEIEFAFQFNDGYTENVLSFVNNVRTKDGGTHELGAKTAMTRAVNEYARKAK 302

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
             K+  +++ G D REGFT+++S+++P+   +F  QTK KL + E RS V+S V++ LS 
Sbjct: 303 LLKEKDKNLDGSDIREGFTALISVRVPEEKLQFEGQTKGKLGTPEARSAVDSLVSEKLSF 362

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKK 424
           + EE+P  + ++++K + A+  R+AAR+AR+   + +K       L GKL     ++P++
Sbjct: 363 FFEENPEMSSMLIRKAIKAAQAREAARKAREEARSGKKNRRRDVLLSGKLTPAQSKNPQR 422

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ D ++ ++EI T+I  +G G
Sbjct: 423 NELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKIDDIMKNEEIRTIIHTIGAG 482

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           +G D F ++ + Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G +YI  PPLY +
Sbjct: 483 VGAD-FTLDDVNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYIALPPLYKV 541

Query: 545 TR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           ++     + ++Y  DE+ L+  +        I+ +    G ++   L         +D  
Sbjct: 542 SKGSGAKEVVEYAWDEDGLKKAIKKVGRGYTIQRY-KGLGEMNATQLWET-----TMDPE 595

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
            +                      +  +     + S +A  L       E      +   
Sbjct: 596 TRTLIRVRIDDAARAEKRVSTLMGDKVEPRRKWIESHVAFGLEEETNILENENLAVVEEE 655



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 5/257 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +    +    +   E     ++   ++ L        SKN  RN +           
Sbjct: 377 KAIKAAQAREAARKAREEARSGKKNRRRDVLLSGKLTPAQSKNPQRNELYLVEGDSAGGS 436

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  K      +   V N E  +  ++    ++   ++ I       +     N D 
Sbjct: 437 AKQGRDRKFQAVLPLRGKVINTEKAKIDDIMKNEEIRTIIHTIGAGVGADFTLDDVNYDK 496

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT----G 718
           +V           +      F +      + + ++      +  +       ++      
Sbjct: 497 VVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYIALPPLYKVSKGSGAKEVVEYAWD 556

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              L   I  +GR G ++QRYKGLGEMNA+QLWETT++P+TR+L+RV+I DA++A+   S
Sbjct: 557 EDGLKKAIKKVGR-GYTIQRYKGLGEMNATQLWETTMDPETRTLIRVRIDDAARAEKRVS 615

Query: 779 RLMGDEVEPRREFIQEN 795
            LMGD+VEPRR++I+ +
Sbjct: 616 TLMGDKVEPRRKWIESH 632


>gi|312867767|ref|ZP_07727973.1| DNA topoisomerase IV, B subunit [Streptococcus parasanguinis F0405]
 gi|311096830|gb|EFQ55068.1| DNA topoisomerase IV, B subunit [Streptococcus parasanguinis F0405]
          Length = 649

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 273/649 (42%), Positives = 392/649 (60%), Gaps = 17/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHHM++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I VT+N DGS +V D GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGSQIDVTINKDGSLSVEDQGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F + G     L   GSA    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGSAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  R++E +FL   V ++L D R  E   ++  Y+ G++ FV YL+
Sbjct: 179 DPTIFSTTDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDNHVSFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L        G  D   +++AM++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 239 EDKETLTPVL-YFSGESDGFQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARPV 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A    +L ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            ++   +  I   I D      +  +     +       +  +  +L  
Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E     ++    ++   +  I       +     N D ++           +    
Sbjct: 461 VLNTEKANMSDILKNEEINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLL 520

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      + +  +      +  +    G K ++      S L+ +     +G ++Q
Sbjct: 521 LTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQ 580

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   S LMGD+  PRR++I++N
Sbjct: 581 RYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 638


>gi|322389469|ref|ZP_08063021.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           parasanguinis ATCC 903]
 gi|321143847|gb|EFX39273.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           parasanguinis ATCC 903]
          Length = 649

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 273/649 (42%), Positives = 391/649 (60%), Gaps = 17/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHHM++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I VT+N DGS +V D GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGSQIDVTINKDGSLSVEDQGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F + G     L   GSA    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGSAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  R++E +FL   V ++L D R  E   +   Y+ G++ FV YL+
Sbjct: 179 DPTIFSTTDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDNHVAFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L        G  D   +++AM++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 239 EDKETLTPVL-YFSGESDGFQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARPV 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A    +L ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            ++   +  I   I D      +  +     +       +  +  +L  
Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E     ++    ++   +  I       +     N D ++           +    
Sbjct: 461 VLNTEKANMSDILKNEEINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLL 520

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      + +  +      +  +    G K ++      S L+ +     +G ++Q
Sbjct: 521 LTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQ 580

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   S LMGD+  PRR++I++N
Sbjct: 581 RYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 638


>gi|196250913|ref|ZP_03149597.1| DNA topoisomerase IV, B subunit [Geobacillus sp. G11MC16]
 gi|196209554|gb|EDY04329.1| DNA topoisomerase IV, B subunit [Geobacillus sp. G11MC16]
          Length = 645

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 263/601 (43%), Positives = 377/601 (62%), Gaps = 17/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L GY
Sbjct: 1   MAKRTV-YEYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ D S TV D GRG+P  +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GNYILVQIHKDNSVTVLDEGRGMPVGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G IY   F N G     L   G   N TGT + F P  
Sbjct: 118 HGVGASVVNALSEWLVVTIHRDGFIYRQRFENGGKPVTTLENIG-TTNKTGTIIQFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+TL  RLRE +FL   ++I L+D+R+         Y+ GIEAFV+YL+  
Sbjct: 177 TIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MREVFHYENGIEAFVAYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L        G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR 
Sbjct: 235 KDVLHPVA-YFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357
              Y  +    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 294 FNEYARRVGLLKEKDKNLEGTDIREGMSAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +L+E+P  + +++KK + A   R+AAR+AR+   + +K     A L GKL 
Sbjct: 354 AVVSEQLTYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +L ++EI 
Sbjct: 414 PAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F I  + Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 474 TIIHAIGGGVGAD-FSIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 532

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY I+    + ++++Y   +E L +          I+ +     + +       +
Sbjct: 533 IALPPLYKISKGSGKKETVEYAWTDEQLREITKKMGRGYTIQRYKGLGEMNADQLWETTM 592

Query: 592 D 592
           +
Sbjct: 593 N 593



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   ++ I       +     N D ++           +    
Sbjct: 455 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSIEDINYDKVIIMTDADTDGAHIQVLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK---GISMQ 737
             F +      I + ++      +  +     K +        + +  I +K   G ++Q
Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKISKGSGKKETVEYAWTDEQLREITKKMGRGYTIQ 574

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++A+   + LMGD+VEPRR++I+ +
Sbjct: 575 RYKGLGEMNADQLWETTMNPETRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETH 632


>gi|1226021|emb|CAA58884.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 675

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 274/678 (40%), Positives = 386/678 (56%), Gaps = 38/678 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+   N     Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ 
Sbjct: 1   MAAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+A  + V ++ DGS  V D+GRGIP ++H   G+   +V+MT+LHAGGKF+ ++Y VSG
Sbjct: 60  GFATRVDVKIHADGSVEVRDDGRGIPVEMHA-TGMPTIDVVMTQLHAGGKFDGETYAVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L+  + R+G  +   +   +    L   G    +TGT + F   
Sbjct: 119 GLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVP-GKLKQ-GRETKETGTTIRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
            +IF   D+N++T+  RL+E++FLN  + I L D+R                        
Sbjct: 177 PEIFETTDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y GG+  +V +++R K P+ QS I   G      +++AM+WN G
Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P EAK +V K + ++  
Sbjct: 357 VISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+ ++ITALGTGI  D FDI+KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQSIITALGTGI-HDEFDISKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  L+ NG +++ +PPLY +   +S  ++   +   +  L    
Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEAGR 595

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
            + +     D           +  +                       A          D
Sbjct: 596 AAGKKINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655

Query: 628 QEINVSLASKLANRLNFI 645
            E   S  ++ A  + F+
Sbjct: 656 VEARRSFITRNAKDVRFL 673



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LLEAGRAAGKK-INVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675


>gi|325265438|ref|ZP_08132161.1| DNA gyrase, B subunit [Clostridium sp. D5]
 gi|324029296|gb|EGB90588.1| DNA gyrase, B subunit [Clostridium sp. D5]
          Length = 645

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 293/585 (50%), Positives = 394/585 (67%), Gaps = 4/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I V
Sbjct: 9   DAEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGYCDTIFV 67

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++N   S TV DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 68  SINKGNSITVIDNGRGIPVGINHKAGLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 127

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ I  EG IY+  +  G + + L V G   ++ +GT+VTF P  +IF   
Sbjct: 128 VVNALSQWLEVEIYNEGKIYKQRYERGKVVDKLRVVGECEDEKSGTKVTFFPDDEIFEET 187

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+YDTL+ R RE++FL   ++I L D+R  E  E    Y+GGI+ FV+YL+R K  L +
Sbjct: 188 VFDYDTLKQRFREMAFLTKGLKIVLRDERGEELVEKVFHYEGGIKEFVTYLNRSKTALYE 247

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +DN+++++AM+ ND Y +N   F NNI   +GGTH+ G R+ALT+    Y  
Sbjct: 248 QIIYCEGMKDNVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNALTKTFNDYAR 307

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K  + ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V++ V+  L 
Sbjct: 308 KNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNIVSTQLE 367

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK+ V+K + A   R+AAR+ARDLTRRK  L+  SLPGKLADCS++DPK  
Sbjct: 368 IFLEQNPNVAKMTVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPKNC 427

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+ ++ EI  +ITA GTGI
Sbjct: 428 EIYIVEGDSAGGSAKTARDRSTQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 487

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D F+I KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI +G++Y+ +PPLY + 
Sbjct: 488 -HDDFEITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKDGYVYLAQPPLYKLE 546

Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           + K + Y   +E L   L                 G +    L  
Sbjct: 547 KNKKVWYAYSDEELSQILSEVGRDGNNKIQRYKGLGEMDAEQLWE 591



 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G  ++ +I   R  + +      ++G+ I +    +  R   + I++ Y+      +  
Sbjct: 485 TGIHDDFEITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKDGYVYLAQPPLYK 544

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           L  N           L   +  +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 545 LEKNKKVWYAYSDEELSQILSEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRV 604

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + + +  + D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 605 TMDEETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLDI 645


>gi|332877012|ref|ZP_08444765.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685120|gb|EGJ57964.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 657

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 285/608 (46%), Positives = 390/608 (64%), Gaps = 21/608 (3%)

Query: 1   MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++ + N      Y AD+IQ L+G++ V+ RPSMYIGD  G  GLHH++YEVLDN+IDE+
Sbjct: 1   MAEEVYNEQNTADYSADNIQSLEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVLDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L GY D+I VT+N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKV
Sbjct: 60  LAGYCDMIAVTINEDNSITVEDNGRGIPVDIHKKEGVSALQVVMTKIGAGGKFDKGSYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVS VNALS+ L   + R+G I++  +  G+   P+   G   +  GT+VTFL
Sbjct: 120 SGGLHGVGVSCVNALSNHLTATVYRDGKIWQQEYERGVALYPVKQLGDT-DKRGTKVTFL 178

Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEA 231
           P   IF     F YDTL  R+REL++LN  + ++L D R+ +            + G+  
Sbjct: 179 PDDTIFEQTTEFKYDTLAARIRELAYLNKGITVTLTDLRNKDEKGNYIHEKFHSEKGLTE 238

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YLD ++ P++   I ++G ++ I +++AM +ND Y EN+  + NNI   +GGTHL G
Sbjct: 239 FVKYLDGNRIPIIGGVIAMEGEKNGIPVEVAMTYNDSYTENLHSYVNNINTSEGGTHLQG 298

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVI------GDDCREGFTSVLSIKMPDPRFSSQTKE 345
            R  LTR + +Y +KS   +K  +         GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 299 FRMGLTRTLKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKT 358

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + EV S V   V   L  +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+
Sbjct: 359 KLGNREVTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVM 418

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCSE DPKK ELFLVEGDSAGG+AKQGR+++ QAILPLRGKILNVE+A  
Sbjct: 419 SGGGLPGKLADCSEEDPKKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKILNVEKAMQ 478

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  S EI  + TALG  +G +        +KLRYHK+IIM DADVDG+HI TL+LTFF
Sbjct: 479 HKVFDSDEIKNIYTALGVSVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFF 538

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           FR M  LI N  +YI  PPLY +    S +        +   ++  +           G 
Sbjct: 539 FRYMRELIENEHVYIATPPLYLVKSKTSKRQEYAWSDKQRDALSAEMGNVTIQRYKGLGE 598

Query: 582 ISKNDLRN 589
           ++ + L +
Sbjct: 599 MNDHQLWD 606



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 56/69 (81%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +++QRYKGLGEMN  QLW+TT++P  R+L +V I +AS+AD +FS LMGDEV PRREFI+
Sbjct: 588 VTIQRYKGLGEMNDHQLWDTTMDPAHRTLRKVTIDNASEADRVFSMLMGDEVPPRREFIE 647

Query: 794 ENSLPSALD 802
           +N+  + +D
Sbjct: 648 KNAKYAKID 656


>gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656]
 gi|238874109|gb|ACR73816.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656]
 gi|291526542|emb|CBK92129.1| DNA gyrase subunit B [Eubacterium rectale DSM 17629]
 gi|291529185|emb|CBK94771.1| DNA gyrase subunit B [Eubacterium rectale M104/1]
          Length = 645

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 301/650 (46%), Positives = 409/650 (62%), Gaps = 20/650 (3%)

Query: 1   MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS  IQ  N  Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L 
Sbjct: 1   MSKEIQQNNQEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT+  D S TV D+GRGIP   + +   SA EV+ T LHAGGKF    YKVSG
Sbjct: 60  GYCKNIEVTIEEDNSITVQDDGRGIPVGTNHKAKKSALEVVFTVLHAGGKFGGGGYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLP 177
           GLHGVG SVVNALS+WL + + ++GNIY  S+  G  D+ + + G       GT+V FLP
Sbjct: 120 GLHGVGASVVNALSTWLTVEVYKDGNIYRQSYKRGKTDDTVKIVGQCDESLHGTKVHFLP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             +IF    ++YDTL+ RLRE +FL   ++I+L D R          Y+GGI+ FV YL+
Sbjct: 180 DPEIFEETVYDYDTLKQRLRETAFLTKGLKITLKDVRENSHHNHVFHYEGGIKEFVEYLN 239

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R K+ L    I  +G+++ + +++A++ ND ++++   F NN+   +GGTHL+G R+ALT
Sbjct: 240 RGKEALYDEVIYCEGTQNGVYVEVALQHNDSFNDSTFSFVNNVITPEGGTHLAGFRNALT 299

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           +   +Y  +    K    ++ GDD REG T+++SIK+ +P+F  QTK+KL +SE R  V+
Sbjct: 300 KTFNAYAREKKILKDSDPALTGDDIREGLTAIISIKIEEPQFEGQTKQKLGNSEARGAVD 359

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + V++ L+ +LE++P  AK I +K L A   R+AAR+ARDLTRRK  LD  +LPGKLADC
Sbjct: 360 AVVSEKLTYFLEQNPDVAKNICEKSLLAQRAREAARKARDLTRRKTSLDGGTLPGKLADC 419

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S++DPK  E+F+VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR D++  + EI  +
Sbjct: 420 SDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDRIYDNAEIRAM 479

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITA GTGI +D FDI KLRY KIIIMTDADVDGAHI TL+LTF +R MP LI  G +Y+ 
Sbjct: 480 ITAFGTGIHED-FDITKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPDLIKEGHVYLA 538

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALK 596
            PPLY + + K + Y  D++ L+  L +               G +  + L     D   
Sbjct: 539 TPPLYKVEKNKGVWYAYDDDELKQILNDIGRDNNNKIQRYKGLGEMDADQLWETTMD--- 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
                       D   ++Q +I G  + E D      +  K+  R  FI 
Sbjct: 596 -----------PDHRILKQVMIDGENSSELDVTFTTLMGDKVEPRKEFIE 634



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 4/91 (4%)

Query: 717 TGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQA 773
                L   +  IGR   + +QRYKGLGEM+A QLWETT++PD R L +V I   ++S+ 
Sbjct: 555 YDDDELKQILNDIGRDNNNKIQRYKGLGEMDADQLWETTMDPDHRILKQVMIDGENSSEL 614

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D  F+ LMGD+VEPR+EFI+ N+     LDI
Sbjct: 615 DVTFTTLMGDKVEPRKEFIEANAKYVTNLDI 645


>gi|16802054|ref|NP_463539.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e]
 gi|46906230|ref|YP_012619.1| DNA gyrase, B subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093016|ref|ZP_00230795.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858]
 gi|47097288|ref|ZP_00234846.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|224498301|ref|ZP_03666650.1| DNA gyrase, B subunit [Listeria monocytogenes Finland 1988]
 gi|224503071|ref|ZP_03671378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL R2-561]
 gi|226222645|ref|YP_002756752.1| DNA gyrase subunit B [Listeria monocytogenes Clip81459]
 gi|254824774|ref|ZP_05229775.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194]
 gi|254827430|ref|ZP_05232117.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254830702|ref|ZP_05235357.1| DNA gyrase subunit B [Listeria monocytogenes 10403S]
 gi|254851836|ref|ZP_05241184.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503]
 gi|254899680|ref|ZP_05259604.1| DNA gyrase subunit B [Listeria monocytogenes J0161]
 gi|254913117|ref|ZP_05263129.1| DNA gyrase subunit B [Listeria monocytogenes J2818]
 gi|254930863|ref|ZP_05264222.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262]
 gi|254937498|ref|ZP_05269195.1| DNA gyrase subunit B [Listeria monocytogenes F6900]
 gi|254994017|ref|ZP_05276207.1| DNA gyrase subunit B [Listeria monocytogenes FSL J2-064]
 gi|255520064|ref|ZP_05387301.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-175]
 gi|284803260|ref|YP_003415125.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578]
 gi|284996401|ref|YP_003418169.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923]
 gi|300763380|ref|ZP_07073378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017]
 gi|21328234|gb|AAM48481.1|AF084042_1 DNA gyrase subunit B [Listeria monocytogenes]
 gi|16409365|emb|CAC98221.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e]
 gi|46879494|gb|AAT02796.1| DNA gyrase, B subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47014333|gb|EAL05308.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|47018584|gb|EAL09338.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858]
 gi|225875107|emb|CAS03795.1| DNA gyrase subunit B [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258599808|gb|EEW13133.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258605128|gb|EEW17736.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503]
 gi|258610100|gb|EEW22708.1| DNA gyrase subunit B [Listeria monocytogenes F6900]
 gi|284058822|gb|ADB69763.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578]
 gi|284061868|gb|ADB72807.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923]
 gi|293582408|gb|EFF94440.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262]
 gi|293591119|gb|EFF99453.1| DNA gyrase subunit B [Listeria monocytogenes J2818]
 gi|293594013|gb|EFG01774.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194]
 gi|300515657|gb|EFK42706.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017]
 gi|328468327|gb|EGF39333.1| DNA gyrase subunit B [Listeria monocytogenes 1816]
 gi|332310339|gb|EGJ23434.1| DNA gyrase subunit B [Listeria monocytogenes str. Scott A]
          Length = 646

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 288/597 (48%), Positives = 401/597 (67%), Gaps = 11/597 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L++ + REG  Y   F  G +   +   G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IF+    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S+ +   ++ L+ ++ E+P  AK IV+K + AS  R AA+RAR++ R+   L+I+SLPGK
Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P+ SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++L+++E
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+ TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G+
Sbjct: 479 IRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +YI +PPLY I  GK ++YV  +  LEDYL +     +         G ++   L +
Sbjct: 538 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWD 594



 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 7/219 (3%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           +  + QA++     + N E  +   +    ++      +  
Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 488

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +  S +    L+      V    +        +      + +  I       L  
Sbjct: 489 GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIY-IAQPPLYQ 547

Query: 708 ICNGDKIK-ITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           I +G +I+ +     L D + S  G    S+QRYKGLGEMN  QLW+TT+NP+ R+LL+V
Sbjct: 548 IKHGKQIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 607

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            I DA  AD+ F  LMGD VEPRR+FI++N+     LD+
Sbjct: 608 NIKDAIDADETFEMLMGDRVEPRRKFIEDNAQYVKNLDV 646


>gi|321311453|ref|YP_004203740.1| DNA topoisomerase IV subunit B [Bacillus subtilis BSn5]
 gi|291484420|dbj|BAI85495.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. natto
           BEST195]
 gi|320017727|gb|ADV92713.1| DNA topoisomerase IV subunit B [Bacillus subtilis BSn5]
          Length = 655

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 266/661 (40%), Positives = 392/661 (59%), Gaps = 23/661 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L G+
Sbjct: 1   MARK-QQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEVLAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GDHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I+R+G +Y+  F N G     L   G     TGT   F P  
Sbjct: 118 HGVGASVVNALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTK-KTGTLTHFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +FS   +N++TL  RLRE +FL   ++I LID+R+   +    +Y+ GIEAFV+     
Sbjct: 177 TMFSTTTYNFETLSERLRESAFLLKGLKIELIDERND--QHEVFYYENGIEAFVA-YLNE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +K ++   +  +G   +I +D A ++NDGY EN+L F NN+  KDGGTH SG ++A+TR 
Sbjct: 234 EKDVLSEVVSFEGEHHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 294 FNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+   A ++VKK + AS  R+AAR+AR+   + +K     A+L GKL 
Sbjct: 354 AIVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F I+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI +G ++
Sbjct: 474 TIIHAIGGGVGAD-FSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY +++G   + +       +Y  +     ++         I +      ++   
Sbjct: 533 IALPPLYKVSKGSGKKEII------EYAWSDEEMGDVLKKVGKGYTIQRYKGLGEMNADQ 586

Query: 596 KIDKLIKDFYPNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
             +  +        +  I+ A            +  +     +   +A  L+  +   E 
Sbjct: 587 LWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 646

Query: 652 S 652
            
Sbjct: 647 E 647



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 5/257 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +    +    +   E     +    E  L        S+N  +N +           
Sbjct: 377 KAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGS 436

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +      +   V N E  +  ++    ++   ++ I       +     N D 
Sbjct: 437 AKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDINYDK 496

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TG 718
           ++           +      F +      I   ++      +  +     K +I      
Sbjct: 497 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWS 556

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              + D +  +G KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++ +   +
Sbjct: 557 DEEMGDVLKKVG-KGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVT 615

Query: 779 RLMGDEVEPRREFIQEN 795
            LMGD+VEPRR++I++N
Sbjct: 616 TLMGDKVEPRRKWIEKN 632


>gi|319653142|ref|ZP_08007244.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
 gi|317395063|gb|EFV75799.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
          Length = 660

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 274/670 (40%), Positives = 395/670 (58%), Gaps = 22/670 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N +   Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MARNQEAFDYNDDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNAVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S +V D GRG+PT +H   G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 60  GDHIIVKIHKDNSISVQDKGRGMPTGMH-RMGKPTPEVILTVLHAGGKFGQGGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL ++IKR+G +YE  F   G     L   G   N +GT + F P  
Sbjct: 119 HGVGASVVNALSEWLVVKIKRDGFVYEQRFELGGKPVTTLEKVGKT-NQSGTTIHFKPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   +NY+TL  RLRE +FL   ++I +ID+R+         Y+ GIEAFV YL+  
Sbjct: 178 SIFSTTTYNYETLCERLRESAFLLKGMKIEIIDERND--FHDVFHYENGIEAFVEYLNEE 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +  +G  + I +D A ++NDGY ENVL F NN+  KDGGTH +G ++A+TR 
Sbjct: 236 KDILHP-VVSFEGESNGIEVDFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGSKTAMTRA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REGFT+++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 295 FNEYARKVNLLKEKDKNLDGADLREGFTAIVSVRVPEELLQFEGQTKGKLGTSEARSAVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V++ LS +LEE+P  + +++KK + A   R+AAR+AR+   + +K     A L GKL 
Sbjct: 355 SVVSEHLSYFLEENPETSSLLIKKAIKAFQAREAARKAREEARSGKKRKKSEAMLSGKLT 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+++EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 415 PAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEIN 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F++  + Y K+IIMTDAD DGAHI+ LLLTFF+R M  L+  G ++
Sbjct: 475 TIIHAVGAGVGSD-FNLEDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVF 533

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   ++ L+D  I +     +       G ++ + L    
Sbjct: 534 IALPPLYKVSKGSGKKEVIEYAWSDDDLQD-TIKKVGKGYMLQRYKGLGEMNADQLWET- 591

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                +D   +                      +  +     + S +A  L       E 
Sbjct: 592 ----TMDPESRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIESNVAFGLEEDGSILEN 647

Query: 652 SWHGSINNSD 661
                +    
Sbjct: 648 ENISVLEEEG 657



 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 107/265 (40%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     I +       ++               +      S  +          ++   +
Sbjct: 370 ETSSLLIKKAIKAFQAREAARKAREEARSGKKRKKSEAMLSGKLTPAQSRNPQRNELYLV 429

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QAV+     V N E  +  ++    ++   ++ +       ++
Sbjct: 430 EGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEINTIIHAVGAGVGSDFN 489

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
               N D ++           +      F +      + + ++      +  +     K 
Sbjct: 490 LEDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVFIALPPLYKVSKGSGKK 549

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L DTI  +G KG  +QRYKGLGEMNA QLWETT++P++R+L+RVKI DA
Sbjct: 550 EVIEYAWSDDDLQDTIKKVG-KGYMLQRYKGLGEMNADQLWETTMDPESRTLIRVKIDDA 608

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+ N
Sbjct: 609 ARAERRVTTLMGDKVEPRRKWIESN 633


>gi|226303498|ref|YP_002763456.1| DNA gyrase subunit B [Rhodococcus erythropolis PR4]
 gi|229491178|ref|ZP_04385006.1| DNA gyrase, B subunit [Rhodococcus erythropolis SK121]
 gi|226182613|dbj|BAH30717.1| DNA gyrase subunit B [Rhodococcus erythropolis PR4]
 gi|229321916|gb|EEN87709.1| DNA gyrase, B subunit [Rhodococcus erythropolis SK121]
          Length = 678

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 259/613 (42%), Positives = 372/613 (60%), Gaps = 36/613 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            +  +  Y+A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ G+A 
Sbjct: 8   TSTSSKDYNASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGHAT 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + VTL  DG   V D+GRGIP  +H   G+   EV++T+LHAGGKF+  SY VSGGLHG
Sbjct: 67  KVEVTLLEDGGIRVIDDGRGIPVGMHAS-GVPTVEVVLTQLHAGGKFDSDSYAVSGGLHG 125

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS+ L + IK +G  ++ ++ +      L V G    +TGT V+F    +IF
Sbjct: 126 VGISVVNALSTRLDVDIKVDGYRWQQTYTDSKP-GEL-VQGDPTKETGTTVSFWADPEIF 183

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216
               +N++T+  RL+E++FLN  + I+L D+R+                           
Sbjct: 184 ETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPKSAAEEAEEAAQA 243

Query: 217 ---EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
              + +     Y GG+E +V ++++ K P+  S +          +++AM+WN GY E+V
Sbjct: 244 APRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGHELEVAMQWNSGYSESV 303

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N I   +GGTH  G R+ALT  +  Y  +    K     + GDD REG  +++S+K
Sbjct: 304 HTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDDIREGLAAIISVK 363

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR
Sbjct: 364 VGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNKAVSSAQARVAAR 423

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+L RRK   D+  LPGKLADC   DP+KSE+++VEGDSAGGSAK GR    QAILPL
Sbjct: 424 KARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGRDSMYQAILPL 483

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++M DADVDG HI
Sbjct: 484 RGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDGQHI 542

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQSLSEE 571
            TLLLT  FR M  L+ +G +Y+ +PPLY     +G   ++   +   +  +     S +
Sbjct: 543 ATLLLTLLFRFMRPLVEHGKVYLAQPPLYKLKWQKGAQPEFAYSDRERDAMVKAGLESGK 602

Query: 572 IELFCDSKGVISK 584
                D       
Sbjct: 603 KINKDDGIQRYKG 615



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 6/82 (7%)

Query: 727 FSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
              G+K I+    +QRYKGLGEMNA +LWETT++P  R L  V + DA+ AD+LFS LMG
Sbjct: 598 LESGKK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDDAAAADELFSVLMG 656

Query: 783 DEVEPRREFIQENSLPSA-LDI 803
           ++VE RR FI  N+     LD+
Sbjct: 657 EDVEARRSFITRNARDVRFLDV 678


>gi|306825577|ref|ZP_07458916.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304431938|gb|EFM34915.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 648

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 281/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVLIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L +R+ + G IY   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVRVHKNGKIYYQEYHRGNVVADLEVIGDT-DRTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLRISITDKREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         SK  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGANQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L    S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGANQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|296331026|ref|ZP_06873501.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674543|ref|YP_003866215.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152031|gb|EFG92905.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412787|gb|ADM37906.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 655

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/661 (40%), Positives = 395/661 (59%), Gaps = 23/661 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MARK-QQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEVLAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GDHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I+R+G +Y+  F N G     L   G     TGT   F P  
Sbjct: 118 HGVGASVVNALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTK-KTGTLTHFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +FS   +N++TL  RLRE +FL   ++I LID+R+   ++   +Y+ GIEAFV+     
Sbjct: 177 TMFSTTTYNFETLSERLRESAFLLKGLKIELIDERND--QQEIFYYENGIEAFVA-YLNE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +K  +   +  +G   +I +D A ++NDGY EN+L F NN+  KDGGTH SG ++A+TR 
Sbjct: 234 EKDALSEVVSFEGEHHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 294 FNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+   A ++VKK + AS  R+AAR+AR+   + +K     A+L GKL 
Sbjct: 354 AVVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F I+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI +G ++
Sbjct: 474 TIIHAIGGGVGAD-FSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E ++D L        I+ +    G ++ + L    
Sbjct: 533 IALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGKGYTIQRY-KGLGEMNADQLWET- 590

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                ++   +                      +  +     +   +A  L+  +   E 
Sbjct: 591 ----TMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 646

Query: 652 S 652
            
Sbjct: 647 E 647



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 3/256 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +    +    +   E     +    E  L        S+N  +N +           
Sbjct: 377 KAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGS 436

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +      +   V N E  +  ++    ++   ++ I       +     N D 
Sbjct: 437 AKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDINYDK 496

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGP 719
           ++           +      F +      I   ++      +  +     K +I      
Sbjct: 497 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWS 556

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
              +D +     KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++ +   + 
Sbjct: 557 DEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVTT 616

Query: 780 LMGDEVEPRREFIQEN 795
           LMGD+VEPRR++I++N
Sbjct: 617 LMGDKVEPRRKWIEKN 632


>gi|229551099|ref|ZP_04439824.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258507000|ref|YP_003169751.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG]
 gi|258538197|ref|YP_003172696.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705]
 gi|229315560|gb|EEN81533.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257146927|emb|CAR85900.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG]
 gi|257149873|emb|CAR88845.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705]
 gi|259648370|dbj|BAI40532.1| DNA gyrase B subunit [Lactobacillus rhamnosus GG]
          Length = 653

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 281/630 (44%), Positives = 406/630 (64%), Gaps = 10/630 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YDA  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A  I V +N
Sbjct: 19  YDASQIQVLSGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATRIEVEVN 77

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D S TV+D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGVG SVVN
Sbjct: 78  PDNSVTVTDDGRGIPVDIQAKTGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGASVVN 137

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFN 188
           ALS+ L + + R G  Y + F+ G ++ P+   G A  ++ GT+V F P  DIF+     
Sbjct: 138 ALSTNLDVTVVRGGKRYYIDFVRGKVNTPMKELGPAPEHEHGTKVHFQPDPDIFTETTTF 197

Query: 189 YDTLQ-HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            D +   R+REL+FLN  ++++  DKR+    ++   Y+GG++++V +L + K+ L+Q P
Sbjct: 198 DDKVLTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGLKSYVDFLTKKKENLLQEP 257

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I ++G    I++++A+++ + YH  +L F NNI   +GGTH +G ++ALTR I  Y  +S
Sbjct: 258 IYVEGQDKGITVEVALQYTNDYHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRS 317

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K     + GDD REG T+V+S+K PDP+F  QTK KL +S+ R+VV+   +D  + +
Sbjct: 318 GALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKF 377

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L EHP + K+I+ K + AS  R AA+RAR++TR+K  L+I++LPGKLAD + +DP+ SEL
Sbjct: 378 LMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISEL 437

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAK GRSR  QAILP+RGKILNVE+A  +++L+++EI TL TA+GTG G 
Sbjct: 438 FIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGFG- 496

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
             FDI+K RYHK+IIMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PPLY + +G
Sbjct: 497 QDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQG 556

Query: 548 KSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           K ++Y+  +E L+D L     S +         G +  + L         +D   +    
Sbjct: 557 KMMRYIDSDEELQDILGQLPPSPKPDIQRYKGLGEMDASQLWET-----TMDPDTRRLLR 611

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              K   +   I  +   +  +     +  
Sbjct: 612 VSPKDAEQADGIFEMLMGDHVEPRRKFIEE 641



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 56/71 (78%), Gaps = 3/71 (4%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ASQLWETT++PDTR LLRV   DA QAD +F  LMGD VEPRR+FI+EN
Sbjct: 583 IQRYKGLGEMDASQLWETTMDPDTRRLLRVSPKDAEQADGIFEMLMGDHVEPRRKFIEEN 642

Query: 796 SLPS---ALDI 803
           ++      +D+
Sbjct: 643 AVFVDPNNIDV 653


>gi|209525244|ref|ZP_03273786.1| DNA gyrase, B subunit [Arthrospira maxima CS-328]
 gi|209494259|gb|EDZ94572.1| DNA gyrase, B subunit [Arthrospira maxima CS-328]
          Length = 645

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 295/646 (45%), Positives = 407/646 (63%), Gaps = 15/646 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY   I V
Sbjct: 2   TSTYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N D S  V+D+GRGIP D H + G SA E +MT LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  EINPDNSVRVTDDGRGIPIDTHSKTGRSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS W+++ + R+   Y   +  G+    +    S    TGT V F P + IF+   
Sbjct: 121 VVNALSEWVEVTVLRDHKRYVQRYERGVPVTEVKEHSSKETQTGTSVCFKPDTKIFTTGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240
           +F YDT+  RLREL++LN+ V+I+L D R       E +  +  Y+GGI+ +V+Y++R K
Sbjct: 181 EFEYDTIASRLRELAYLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + L +  I + G R+N+ +++A++W  D Y + +L F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QALHEDTIYVSGERNNVQVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +   K    K ++ ++ G++ REG T V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 MNAIARKRNKIKDNEPNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +L+ +P  A  I++K + A    +AARRARDL RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLTEFLDFNPNVADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP++SE+FLVEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI +LIT
Sbjct: 421 RDPEESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GI  + FD ++LRYHK+IIMTDADVDGAHIRTLLLTFF+R    L+  GF+YI  P
Sbjct: 481 ALGLGIKGEEFDPSQLRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVDQGFIYIACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598
           PLY + RG++  Y  +E+ L+  L     +           G +  N L +       ++
Sbjct: 541 PLYKVERGRNHYYCYNEQQLQQQLAEFPDNANYTIQRFKGLGEMMPNQLWDT-----TMN 595

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +       +   E   I  V   +             A RL+ 
Sbjct: 596 PETRSIKRVEIEDAAEADHIFTVLMGDRVAPRRQ-FIEDHAPRLDI 640



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 57/70 (81%), Gaps = 2/70 (2%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
            ++QR+KGLGEM  +QLW+TT+NP+TRS+ RV+I DA++AD +F+ LMGD V PRR+FI+
Sbjct: 573 YTIQRFKGLGEMMPNQLWDTTMNPETRSIKRVEIEDAAEADHIFTVLMGDRVAPRRQFIE 632

Query: 794 ENSLPSALDI 803
           +++    LDI
Sbjct: 633 DHAPR--LDI 640


>gi|282896629|ref|ZP_06304644.1| DNA gyrase, B subunit [Raphidiopsis brookii D9]
 gi|281198499|gb|EFA73385.1| DNA gyrase, B subunit [Raphidiopsis brookii D9]
          Length = 798

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 288/812 (35%), Positives = 426/812 (52%), Gaps = 30/812 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY   + V
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCTHVDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            LN DGSCTV+D+GRGIPTD+H + G SA E ++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  ELNADGSCTVTDDGRGIPTDIHPKTGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  + + + RE  ++   +  G     L V     + TGT V F P + IF+   
Sbjct: 121 VVNALSEVVDITVWREHKVHTQRYERGAPTTELQVEPDQQSRTGTSVKFKPDAQIFTTGT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+Y TL  RLREL++LN+ V+IS  D R     +  P+  T  YKGGI+ +VSY++R K
Sbjct: 181 EFDYITLAGRLRELAYLNAGVKISFTDHRLELLKTDTPKVETYEYKGGIKEYVSYINRDK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + L +  I +QG R+N+ +++A++W  D Y +NVL F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QALHEEIIYVQGERNNVQVEVALQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKTVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S   K    K+++ ++ G+  REG T+V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 LNSIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +LE HP  A  I+ K + A    +AAR AR+L RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLTEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP +SE+F+VEGDSAGG          +    L    L  E+A   +        T+  
Sbjct: 421 RDPAESEIFIVEGDSAGGCFVGNTLVSLKDGRNLTFTDLIAEQAAGKENY----CYTIRE 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII-- 537
               GI +           +++ +T   +D   +        F     ++ +G       
Sbjct: 477 NGEVGIEKILHVRRTKTNAEVVRVT---LDNDQVLICTPDHLF-----MLRDGNYQAAGL 528

Query: 538 -KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
             P    +             ++  Y       E +    D   +   +     +   + 
Sbjct: 529 LTPQDSLMPYYDQSIPTVIRSAVTTYNHRVVSVESLPEKFDVYDLEVPHTHNFALAAGVF 588

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-KSWHG 655
           +    K       +  +   +   + N E   +  +   +++ + +  +    + + +  
Sbjct: 589 VHNSAKQGRDRRTQAIL--PLRGKILNIEKTDDAKIYKNNEVQSLITALGLGVKGEEFDA 646

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
           S      +V      V    +      F +  +   I    I      +  +    +   
Sbjct: 647 SQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIACPPLYKVERGKNYNY 706

Query: 716 ITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                 L   I ++ G    ++QR+KGLGEM   QLW TT+NP+TR+L +V+I DA++AD
Sbjct: 707 CYSDRELQQHISTLPGNANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKQVEIEDAAEAD 766

Query: 775 DLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
            +F+ LMGD V PRREFI+          LDI
Sbjct: 767 RIFTILMGDRVAPRREFIETYGSKLNLTDLDI 798


>gi|206895598|ref|YP_002246982.1| DNA gyrase, B subunit [Coprothermobacter proteolyticus DSM 5265]
 gi|206738215|gb|ACI17293.1| DNA gyrase, B subunit [Coprothermobacter proteolyticus DSM 5265]
          Length = 637

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 248/593 (41%), Positives = 369/593 (62%), Gaps = 12/593 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  +++  +Y A+ I++L  L+ V+KRP+MYIG TD  +GLHH+I+E++DNAIDE++ G+
Sbjct: 1   MEKSLKTKNYGAEQIKVLGDLEGVRKRPAMYIGSTDK-NGLHHLIWEIVDNAIDEAMAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V L  DGS  V DNGRGIP ++H +EG    EV++T+LHAGGKF  ++YK SGGL
Sbjct: 60  CDHIKVVLYKDGSVLVEDNGRGIPVEIHPQEGRPTVEVVLTKLHAGGKFGGQAYKASGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPS 178
           HGVG+SVVNALS WL++ +KR+G +Y   +  G     +   G       + T V F P 
Sbjct: 120 HGVGLSVVNALSEWLEITVKRDGTVYWQRYEFGKPVTEVKEIGQYDDTESSATIVQFKPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF+   F+Y+ ++ RLREL+FLNS V I L  + S            G+   V+    
Sbjct: 180 KSIFADTRFDYEVIRQRLRELAFLNSEVTIELQREGSEPEFFHFESGLAGLLEEVA---- 235

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +    +   +R  G++ ++ +++A  + D + EN++ F N++   DGGTH+ GLRSA+++
Sbjct: 236 NSSEKIIDVLRFSGAQQDVQVEVAFTYVDDFDENIVSFVNSVRTVDGGTHVQGLRSAISK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +     +         +V  DD R+G  +V+++++P+P F  QTK KL S  VR++VE 
Sbjct: 296 TLAEVGRRKGLL--KDNNVSSDDFRQGLRAVVAVRVPEPEFEGQTKGKLGSKYVRNIVED 353

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V+    ++LE      K ++++ L ++ +R+  +R R++ + +  ++   LPGKL+DCS
Sbjct: 354 VVSKAFESYLETQNDVTKTLIQRALASAEMRETFKRTREMMKNRLRVESTVLPGKLSDCS 413

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RD +K EL +VEG+SAGGSAKQGR R  QA+LPLRGKILNVE+A + ++L ++EI  LI
Sbjct: 414 SRDVEKRELLIVEGESAGGSAKQGRDRTIQAVLPLRGKILNVEKASWKRVLDNEEIQALI 473

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+GTG+G+  F+  KLRY KIIIMTDADVDGAHIRTLLLTFFFR M  L+  G +YI +
Sbjct: 474 AAIGTGVGEH-FNFAKLRYGKIIIMTDADVDGAHIRTLLLTFFFRMMRPLVEEGHIYIAQ 532

Query: 539 PPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY I   + K + Y+  +E L+ +L                G ++   L  
Sbjct: 533 PPLYKIERKKSKDIIYLYSDEDLQAFLREHEGENFEIQRYKGLGEMNAEQLWE 585



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 5/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      V    ++   +  I     + ++ +      ++      V    +    
Sbjct: 452 ILNVEKASWKRVLDNEEIQALIAAIGTGVGEHFNFAKLRYGKIIIMTDADVDGAHIRTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSLLDTIFS-IGRKGISMQ 737
             F F      +    I      +  +     K  I +     L   +    G     +Q
Sbjct: 512 LTFFFRMMRPLVEEGHIYIAQPPLYKIERKKSKDIIYLYSDEDLQAFLREHEGE-NFEIQ 570

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS- 796
           RYKGLGEMNA QLWETTLNP+TR+L  V + DA +AD+LFS LMG++V+PR+EFI  N+ 
Sbjct: 571 RYKGLGEMNAEQLWETTLNPETRNLYMVTVEDAEKADELFSVLMGEKVQPRKEFIFANAN 630

Query: 797 LPSALDI 803
           L   LD+
Sbjct: 631 LVKNLDV 637


>gi|13357637|ref|NP_077911.1| DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762124|ref|YP_001752160.1| DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920490|ref|ZP_02931785.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508595|ref|ZP_02689822.2| DNA gyrase, B subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701878|ref|ZP_02553290.2| DNA gyrase, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11270885|pir||E82937 DNA topoisomerase, DNA gyrase subunit B UU081 [imported] -
           Ureaplasma urealyticum
 gi|6899032|gb|AAF30486.1|AE002107_10 DNA topoisomerase - DNA gyrase subunit B [Ureaplasma parvum serovar
           3 str. ATCC 700970]
 gi|168827701|gb|ACA32963.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902958|gb|EDT49247.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676050|gb|EDT87955.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701184|gb|EDU19466.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 650

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 259/602 (43%), Positives = 374/602 (62%), Gaps = 17/602 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D+ +   Y A+SI++L+GL+AV+KRP MYIG T  E GLHHMI+E++DN+IDE++ G+
Sbjct: 1   MNDSNKEKKYTAESIKVLEGLEAVRKRPGMYIGSTQSE-GLHHMIWEIVDNSIDEAMGGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A I+ V L  DGS  V D+GRGIP ++H++ G+S  E ++T LHAGGKF+  SYKVSGGL
Sbjct: 60  ATIVRVILKKDGSVRVEDDGRGIPIEIHEKTGLSGVETVLTVLHAGGKFDNDSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVT-GSAGNDTGTEVTFLPS 178
           HGVG SVVNALS   K+ + +    Y + FIN G    PL         + GT + F+P 
Sbjct: 120 HGVGASVVNALSKNFKVWVNKNHVQYYVEFINGGHAIEPLKPINNKDVKEKGTTIEFIPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I    +++   +  RL++L++LN  V I    + +   R+    Y+GG++ +++ L+ 
Sbjct: 180 FEIMEENEWDELKIMARLKQLAYLNKGVNIEFESELT--NRKEKWHYEGGLKEYITDLNA 237

Query: 239 HKKPLMQSPIRIQGSR-----------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            K+PL    +  +  +            NI  ++A ++N+ Y+ +   F NNI   +GGT
Sbjct: 238 EKEPLFDLIVYGEEEKEVRVPGHNEQTYNIKCEVAFQYNNSYNNSTHSFCNNINTTEGGT 297

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G + A+TR +  Y       K     +  +D  EG T+++S+K P+P++  QTK+KL
Sbjct: 298 HEEGFKLAITRLLNKYAVDKKYLKDTDDKITKEDVSEGLTAIISVKHPNPQYEGQTKKKL 357

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SEVR  V    +     +L E+P E+K IV KV+ A+  R  +  AR+ TRRK   + 
Sbjct: 358 GNSEVRPYVNEITSIIFEKFLNENPEESKKIVAKVMQAAEARRRSHEAREATRRKSPFES 417

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            SLPGKLADCS RD   +E+++VEGDSAGGSAK GR RE QAILPLRGKI+NVE+A+ DK
Sbjct: 418 NSLPGKLADCSNRDSSVTEIYIVEGDSAGGSAKTGREREFQAILPLRGKIINVEKAKIDK 477

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           + +++EI  +ITA G GIG   F+I KLRY KIIIMTDADVDG+HIR LLLTFF+R M  
Sbjct: 478 IFANEEIQNMITAFGAGIG-PEFNIEKLRYSKIIIMTDADVDGSHIRILLLTFFYRYMLP 536

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI NG +YI +PPLY ++  K+++Y   ++ LE      S  +         G ++ + L
Sbjct: 537 LIQNGNVYIAQPPLYKVSYAKTIKYAYSDQELERIKSTISNIKYNIQRYKGLGEMNPDQL 596

Query: 588 RN 589
             
Sbjct: 597 WE 598



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
            ++QRYKGLGEMN  QLWETT++P  R LL+V I DA+ AD  FS LMGD+V PR+EFI+
Sbjct: 580 YNIQRYKGLGEMNPDQLWETTMDPKNRLLLKVNIEDAAIADKTFSLLMGDDVAPRKEFIE 639

Query: 794 ENSLPS-ALD 802
           +N+     +D
Sbjct: 640 KNAKYVKNID 649


>gi|305681577|ref|ZP_07404383.1| DNA gyrase, B subunit [Corynebacterium matruchotii ATCC 14266]
 gi|305658737|gb|EFM48238.1| DNA gyrase, B subunit [Corynebacterium matruchotii ATCC 14266]
          Length = 673

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/640 (42%), Positives = 382/640 (59%), Gaps = 40/640 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y A SI IL+GL+AV+KRP MYIG T+ E GLHH+++EV+DN++DE++ GY
Sbjct: 1   MA--TAEHEYGASSITILEGLEAVRKRPGMYIGSTN-ERGLHHLVWEVVDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD + VT+  DG   V DNGRGIP ++H   G    +V+MT+LHAGGKF+ +SY VSGGL
Sbjct: 58  ADKVEVTILADGGIEVIDNGRGIPVEMHPS-GAPTVQVVMTQLHAGGKFDSESYAVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IKR+G  +  +F N I    L V G     TGT V F P  +
Sbjct: 117 HGVGISVVNALSTRVEADIKRDGKHWYQNFTNAIP-EEL-VAGGPAEGTGTTVRFWPDPE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221
           +F    F+++ +  RL+E++FLN  + I+L DKR+ E                       
Sbjct: 175 VFETTVFSFELIARRLQEMAFLNKGLTITLTDKRASEEEIELETLAEEIAEGDPETAVEA 234

Query: 222 -------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                        T +Y  G++ +V +L++ K  +  + I ++   +N+ +++AM+WN G
Sbjct: 235 AEEKVVKKKEKKKTFYYPNGLQDYVEHLNKSKTAIHPTIISLEVKGENLEVEVAMQWNSG 294

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y ++V  F N I   +GGTH  G R+ALT  +  Y  +    K+ ++++ GDDCREG  +
Sbjct: 295 YAQSVHTFANTINTIEGGTHEEGFRAALTSLMNKYAREHKLLKEKEQNLTGDDCREGLAA 354

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+++ +P+F  QTK KL +SEVR  V+  +N+ +S WL+ +P EAK+I+ K + ++  
Sbjct: 355 VISVRVGEPQFEGQTKTKLGNSEVRGFVQKAINEHVSDWLDANPAEAKVIINKAVSSAHA 414

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR++ RRK   D+  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    Q
Sbjct: 415 RVAARKAREMVRRKSATDLGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKGGRDSMYQ 474

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDI KLRY KI++M DADV
Sbjct: 475 AILPLRGKILNVEKARLDKVLKNNEVQAIITALGTGI-HDEFDIQKLRYGKIVLMADADV 533

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-GKSLQYVKDEESLEDYLINQS 567
           DG HI TLLLT  FR MP LI  G +++ +PPLY +        +   +   ++ L    
Sbjct: 534 DGQHIATLLLTLLFRFMPQLIEEGHVFLAQPPLYKLKWAKGDPGFAYSDNQRDELLAEGL 593

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
            +       D           N  +               
Sbjct: 594 AAGRKINKDDGIQRYKGLGEMNASELWETTLDPQVRILRR 633



 Score =  138 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
            LL    + GRK I+    +QRYKGLGEMNAS+LWETTL+P  R L RV + DA  AD+L
Sbjct: 587 ELLAEGLAAGRK-INKDDGIQRYKGLGEMNASELWETTLDPQVRILRRVDMNDAQLADEL 645

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI   +     LD+
Sbjct: 646 FSILMGDDVAARRSFITRKAKDVRFLDV 673


>gi|50812242|ref|NP_389691.2| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309697|ref|ZP_03591544.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314019|ref|ZP_03595824.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318941|ref|ZP_03600235.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323215|ref|ZP_03604509.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|3914289|sp|Q59192|PARE_BACSU RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|2558946|gb|AAB81614.1| ParE [Bacillus subtilis]
 gi|32468765|emb|CAB13692.2| subunit B of DNA topoisomerase IV [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 655

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 266/661 (40%), Positives = 392/661 (59%), Gaps = 23/661 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L G+
Sbjct: 1   MARK-QQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEVLAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GDHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I+R+G +Y+  F N G     L   G     TGT   F P  
Sbjct: 118 HGVGASVVNALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTK-KTGTLTHFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +FS   +N++TL  RLRE +FL   ++I LID+R+ +      +Y+ GIEAFV+     
Sbjct: 177 TMFSTTTYNFETLSERLRESAFLLKGLKIELIDERNDQR--EVFYYENGIEAFVA-YLNE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +K ++   +  +G   +I +D A ++NDGY EN+L F NN+  KDGGTH SG ++A+TR 
Sbjct: 234 EKDVLSEVVSFEGEHHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 294 FNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+   A ++VKK + AS  R+AAR+AR+   + +K     A+L GKL 
Sbjct: 354 AIVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F I+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI +G ++
Sbjct: 474 TIIHAIGGGVGAD-FSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY +++G   + +       +Y  +     ++         I +      ++   
Sbjct: 533 IALPPLYKVSKGSGKKEII------EYAWSDEEMGDVLKKVGKGYTIQRYKGLGEMNADQ 586

Query: 596 KIDKLIKDFYPNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
             +  +        +  I+ A            +  +     +   +A  L+  +   E 
Sbjct: 587 LWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 646

Query: 652 S 652
            
Sbjct: 647 E 647



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 5/257 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +    +    +   E     +    E  L        S+N  +N +           
Sbjct: 377 KAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGS 436

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +      +   V N E  +  ++    ++   ++ I       +     N D 
Sbjct: 437 AKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDINYDK 496

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TG 718
           ++           +      F +      I   ++      +  +     K +I      
Sbjct: 497 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWS 556

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              + D +  +G KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++ +   +
Sbjct: 557 DEEMGDVLKKVG-KGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVT 615

Query: 779 RLMGDEVEPRREFIQEN 795
            LMGD+VEPRR++I++N
Sbjct: 616 TLMGDKVEPRRKWIEKN 632


>gi|284928768|ref|YP_003421290.1| DNA gyrase subunit B [cyanobacterium UCYN-A]
 gi|284809227|gb|ADB94932.1| DNA gyrase subunit B [cyanobacterium UCYN-A]
          Length = 642

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 290/634 (45%), Positives = 403/634 (63%), Gaps = 9/634 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE+L G+   I V
Sbjct: 4   KSDYGAEQIQVLEGLEPVRKRPGMYIG-TTGPKGLHHLVYEVVDNSIDEALAGHCTHIEV 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N+DGS TV+DNGRGIPTD+H   G SA E +MT LHAGGKF    YKVSGGLHGVG+S
Sbjct: 63  DINIDGSVTVTDNGRGIPTDIHPATGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 122

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS WL +++ R+ ++Y   +  G+  + L       +  GT V+FLP   IF+   
Sbjct: 123 VVNALSEWLIIKVWRDNSVYTQRYECGVAVSELKKEPDTEHPKGTSVSFLPDKQIFTSDT 182

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y TL  RLREL++LNS + I   D R  EP   T FY+GG+  +V+Y+ R+K+ L +
Sbjct: 183 NFDYATLSARLRELAYLNSQITIKFTDYRKQEPYSETYFYEGGLREYVTYMCRNKEALHK 242

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             I I G +  + ++ A +   D Y +N+L F NNI   DGGTHL GL++ LTR + +  
Sbjct: 243 DIIYICGEKKGVQVEAALLWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNNVA 302

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K+++ ++ G++ REG T ++S+K+P+P F  QTK KL ++EVR +V+  V + L
Sbjct: 303 RKRNKIKENEPNLSGENVREGLTGIVSVKVPEPEFEGQTKTKLGNTEVRGIVDLLVGEVL 362

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +LE +P    II++K + A    +AARRARDL RRK VL+ + LPGKLADCS RDP +
Sbjct: 363 GEYLEFNPHVGDIIIEKAVQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSTRDPAE 422

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+FLVEGDSAGGSAKQGR R  QAILPLRGKI+N+E+    K+  + EI +LITALG G
Sbjct: 423 AEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSLITALGLG 482

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  + FD+++LRYH+I+IMTDADVDGAHIRTL+LTFF+R    LI  GF+YI  PPLY I
Sbjct: 483 IKGEEFDVSQLRYHRIVIMTDADVDGAHIRTLILTFFYRYQRLLIEQGFIYIACPPLYKI 542

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            RG++  Y  +E+ L+D +     + +         G +    L N       ++   + 
Sbjct: 543 ERGRNHSYCYNEQQLQDNIKALPANAKYTIQRFKGLGEMMPVQLWNT-----TMNPETRS 597

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                    +E   I  +   +        + + 
Sbjct: 598 MKRVEIDDAVEADRIFTILMGDKVAPRRQFIENY 631



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           + +  S      +V      V    +      F +  +   I    I      +  +   
Sbjct: 486 EEFDVSQLRYHRIVIMTDADVDGAHIRTLILTFFYRYQRLLIEQGFIYIACPPLYKIERG 545

Query: 711 GDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
            +         L D I ++      ++QR+KGLGEM   QLW TT+NP+TRS+ RV+I D
Sbjct: 546 RNHSYCYNEQQLQDNIKALPANAKYTIQRFKGLGEMMPVQLWNTTMNPETRSMKRVEIDD 605

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
           A +AD +F+ LMGD+V PRR+FI+          LDI
Sbjct: 606 AVEADRIFTILMGDKVAPRRQFIENYGSKLNLNDLDI 642


>gi|154249648|ref|YP_001410473.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153584|gb|ABS60816.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 650

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 260/589 (44%), Positives = 372/589 (63%), Gaps = 12/589 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + S Y+A +IQ+LKGL+ V++RP MYIG T G++GLHH++YE++DN+IDE+L+G+ D I
Sbjct: 16  NEASDYNAQNIQVLKGLEPVRQRPGMYIGST-GKNGLHHLVYEIVDNSIDEALQGFCDTI 74

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+  DGS  V DNGRGIP D+H E G SA EV+MT LHAGGKF++ SYKVSGGLHGVG
Sbjct: 75  KVTIKSDGSVEVEDNGRGIPVDIHPETGTSALEVVMTTLHAGGKFSKSSYKVSGGLHGVG 134

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALS W+++ + R+G IY   +  G+    + V G   N  GT V F P   IF+ 
Sbjct: 135 ASVVNALSEWMEVEVHRDGKIYRQRYARGVKTTEVEVIGET-NKRGTIVRFKPDKLIFTT 193

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+ DT+  RLR+L+FLN S+ I  +D+R+   R +     GG++ F+++L++  K L 
Sbjct: 194 TEFDSDTILTRLRDLAFLNPSITIEFVDERNDIKRTLHY--AGGLKEFIAHLNKGSKTLH 251

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              + I GS+ +  + +A ++ D   E ++ F NNI   DGGTH++G ++A TR +    
Sbjct: 252 -EVVVIDGSQQDCEVHIAFQYTDEDGETIVSFVNNIKTIDGGTHVTGFKTAFTRVVNELG 310

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSI-KMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +K            G+D REG T+V+++  M  P+F  QTK KL + E++  V   V D 
Sbjct: 311 KKKNLI--KGEPFKGEDLREGMTAVVNVLMMGTPQFEGQTKSKLGNEEIQDAVAKVVRDK 368

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ + E +    KII++K   A   R+AA+RAR+  +RK  L  ++LPGKLADC  ++ +
Sbjct: 369 LTDYFEVNETVLKIIIQKAQQAREAREAAKRAREAVKRKSALGASTLPGKLADCITKNFE 428

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELF+VEGDSAGGSAKQ R R  QAILPLRGKILNVE++   K+L ++++   I     
Sbjct: 429 EAELFIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSELKLLKNEQVKD-IIMAIG 487

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G   ++FD +KLRY KI+IMTDADVDGAHIRTLLL  F+R M  LI    +YI  PPLY 
Sbjct: 488 GGIGENFDTSKLRYGKIVIMTDADVDGAHIRTLLLALFYRYMRQLIEEERIYIAMPPLYK 547

Query: 544 IT-RGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRN 589
           ++  G+   Y+  +E L +   +  Q+            G ++   L  
Sbjct: 548 LSISGEKPMYLYSDEELNEMINIAKQNNKRYEVQRYKGLGEMNPEQLWE 596



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 6/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   E+ +    ++ + +  I     +++  S      +V      V    +    
Sbjct: 462 ILNVEKSSELKLLKNEQVKDIIMAIGGGIGENFDTSKLRYGKIVIMTDADVDGAHIRTLL 521

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR---KGISMQ 737
               +    + I   RI      +  L  +G+K         L+ + +I +   K   +Q
Sbjct: 522 LALFYRYMRQLIEEERIYIAMPPLYKLSISGEKPMYLYSDEELNEMINIAKQNNKRYEVQ 581

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           RYKGLGEMN  QLWETT+NP TR +++VKI DA +AD LF  LMG + E RRE+I  ++ 
Sbjct: 582 RYKGLGEMNPEQLWETTMNPKTRKIIKVKIEDAEEADSLFEILMGKDPEERREYIMRHAR 641

Query: 798 P---SALDI 803
                 LD+
Sbjct: 642 QLSLVDLDV 650


>gi|296876577|ref|ZP_06900627.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432396|gb|EFH18193.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 15912]
          Length = 649

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/649 (41%), Positives = 391/649 (60%), Gaps = 17/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHHM++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I VT+N DGS +V D GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGSQIDVTINKDGSLSVVDQGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F + G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  R++E +FL   V ++L D R  E   +   Y+ G++ FV YL+
Sbjct: 179 DPTIFSTTDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDNHVAFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L        G  D   +++AM++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 239 EDKETLTPVL-YFSGESDGFQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARPV 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A    +L ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            ++   +  I   I D      +  +     +       +  +  +L  
Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E     ++    ++   +  I       +     N D ++           +    
Sbjct: 461 VLNTEKANMSDILKNEEINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLL 520

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      + +  +      +  +    G K ++      S L+ +     +G ++Q
Sbjct: 521 LTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQ 580

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   S LMGD+  PRR++I++N
Sbjct: 581 RYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 638


>gi|255284071|ref|ZP_05348626.1| DNA gyrase subunit B [Bryantella formatexigens DSM 14469]
 gi|255265416|gb|EET58621.1| DNA gyrase subunit B [Bryantella formatexigens DSM 14469]
          Length = 639

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 247/622 (39%), Positives = 362/622 (58%), Gaps = 14/622 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YDA SI +L+GL+AV+KRP MYIG      GL+H++YE++DNA+DE L GY   I
Sbjct: 1   MAKKTYDAASISVLEGLEAVRKRPGMYIGSVSR-KGLNHLVYEIVDNAVDEHLAGYCSQI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS TV+DNGRG+P D+H++ G+ A  ++ T LHAGGKF+  SYK SGGLHGVG
Sbjct: 60  EVYLEKDGSATVNDNGRGVPVDMHEK-GVPAERLVFTTLHAGGKFDNDSYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----TGSAGNDTGTEVTFLPSS 179
            SVVNALS++L +++   G I+   F  G+    L       TG     TGT + FLP  
Sbjct: 119 SSVVNALSTYLDVQVSLGGQIHHDRFERGVPVVELEKGLLPVTGKTK-KTGTCINFLPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    F  + ++ RL E ++LN ++ I   D+R  E   +      GI  FV  L+R+
Sbjct: 178 EIFEKTQFAAEEIKSRLHETAYLNPALTIIFEDRRGAETEHLEYHEPDGIIGFVKDLNRN 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ +   P+ ++G  D I+++ A ++ + +HENVL F NNI   +GGTHL+G ++A T  
Sbjct: 238 KETVQDPPVYLKGELDGITVECAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTAFTAI 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y  +    K+   +  G D R G T+V+S+K P PRF  QTK KL + +    V   
Sbjct: 298 MNNYARELGILKEKDANFTGADIRNGMTAVVSVKHPAPRFEGQTKTKLDNQDAAKAVAKV 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D    + + +    K ++     A+ +R    +A+     K      S  GKLA+C  
Sbjct: 358 VGDEAVLYFDRNLETLKKVLSCAERAAKIRRTEEKAKTNLLTKQKYSFDS-NGKLANCES 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R P+  E+F+VEGDSAGGSAK  R+R  QAI+P+RGKILNVE+A  DK+L++ EI T+I 
Sbjct: 417 RKPELCEIFIVEGDSAGGSAKMARNRSFQAIMPIRGKILNVEKASIDKVLANAEIKTMIN 476

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           A G G  +   + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI
Sbjct: 477 AFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHIYI 536

Query: 537 IKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
             PPLY         +Y+ D+++LE Y      +  ++ +     + ++      ++   
Sbjct: 537 AMPPLYKAMPARGPEEYLYDDKALEKYR-KTHKNFTLQRYKGLGEMDAQQLWETTLNPET 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
           ++ + ++        +  E  +
Sbjct: 596 RVLRRVEIEDARMASSVTEMLM 617



 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 52/72 (72%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K  ++QRYKGLGEM+A QLWETTLNP+TR L RV+I DA  A  +   LMG EV PR+ F
Sbjct: 568 KNFTLQRYKGLGEMDAQQLWETTLNPETRVLRRVEIEDARMASSVTEMLMGTEVPPRKAF 627

Query: 792 IQENSLPSALDI 803
           I E++  + LD+
Sbjct: 628 IYEHAKDAELDV 639


>gi|18414465|ref|NP_568133.1| DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase
           II, putative / DNA gyrase, putative [Arabidopsis
           thaliana]
 gi|75165162|sp|Q94BZ7|GYRBM_ARATH RecName: Full=DNA gyrase subunit B, mitochondrial; Flags: Precursor
 gi|14517374|gb|AAK62578.1| AT3g10270/F14P13_13 [Arabidopsis thaliana]
 gi|22655426|gb|AAM98305.1| At3g10270/F14P13_13 [Arabidopsis thaliana]
 gi|332003319|gb|AED90702.1| DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 732

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/597 (44%), Positives = 370/597 (61%), Gaps = 12/597 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   +  Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  GYA 
Sbjct: 84  ETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGYAS 142

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120
            + V L+ DGS +V DNGRGIPTDLH     S+ E ++T LHAGGKF   S  Y VSGGL
Sbjct: 143 KVDVVLHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGL 202

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ + R+G  ++ ++  G     L        +    GT + F P
Sbjct: 203 HGVGLSVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWP 262

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFVS 234
             ++F+   +F+++T+  R+REL+FLN  V ISL  +     + +     + GG+  +VS
Sbjct: 263 DKEVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVS 322

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+  K P+       +   +  ++D+A++W  D Y + +L + N+I   DGGTH+ G++
Sbjct: 323 WLNTDKNPIHDVLG-FRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 381

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR + +  +KS   K+   S+ G+  REG T ++S+K+P+P F  QTK +L + EVR
Sbjct: 382 ASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVR 441

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V+  V + L+ +LE HP   + I+ K L+A     AA+RAR+L R K VL  +SLPGK
Sbjct: 442 KIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGK 501

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  DP+ SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  ++E
Sbjct: 502 LADCSSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEE 561

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  LI  LG G+  + F    LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L   G 
Sbjct: 562 IQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGC 621

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +Y+  PPL+ + RGK+ QY  D+  L+    N   +           G +    L  
Sbjct: 622 IYVGVPPLFKVERGKNAQYCYDDADLKKITSNFPANASYNIQRFKGLGEMMPEQLWE 678



 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 114/333 (34%), Gaps = 36/333 (10%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLEDY 562
           D  + G H+R  L      ++P+    G        P +  I      +Y+ +   L   
Sbjct: 402 DISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPD 461

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRN----------------------FIDDALKIDKL 600
           ++   +S+ +  +  +       +L                         + +   ++  
Sbjct: 462 ILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGD 521

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHG 655
                    +    QA++       + +  + +   K     N I       K E     
Sbjct: 522 SAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKE 581

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
           ++    I++      V    +      F F  +     +  I      +  +    +   
Sbjct: 582 NLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQY 640

Query: 716 ITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
                  L  I S        ++QR+KGLGEM   QLWETT+NP+TR L ++ + D ++A
Sbjct: 641 CYDDAD-LKKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEA 699

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
           +  FS LMG  V+ R+E I+  +       LDI
Sbjct: 700 NMTFSSLMGARVDVRKELIKNAATRINLQRLDI 732


>gi|319936688|ref|ZP_08011101.1| DNA gyrase subunit B [Coprobacillus sp. 29_1]
 gi|319808245|gb|EFW04810.1| DNA gyrase subunit B [Coprobacillus sp. 29_1]
          Length = 640

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 288/592 (48%), Positives = 391/592 (66%), Gaps = 6/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +N    SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L G+
Sbjct: 1   MEENKVEHSYDESDIQVLEGLEAVRKRPGMYIGTTSA-RGLHHLVWEIVDNSIDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V L       V DNGRG+PT  H + G S  E I+T LHAGGKF    YKVSGGL
Sbjct: 60  CNEIKVILEKGDIVKVIDNGRGMPTGKHAKTGKSTVETILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ + REG+IY   F  G +    L + G   +DTGT V+F    
Sbjct: 120 HGVGASVVNALSEWLEVHVHREGHIYYQRFEKGGVPVGDLKIIGDC-DDTGTIVSFKADP 178

Query: 180 DIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF+    ++YDTL  R+REL+FLN  +++ L D R+   ++    Y+GGI+ +V+YL+R
Sbjct: 179 LIFNETTIYDYDTLNQRIRELAFLNKGLKLILEDHRNEPYKKNEYHYEGGIKEYVAYLNR 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  + +  I ++   D+I +++ M++NDGY  N+  F NNI   +GGTH  G R ALTR
Sbjct: 239 NKTAIHEEIIYVEDEIDDIKVEVGMQYNDGYQPNIYSFCNNINTHEGGTHEEGFRLALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y + +   KKD  S+ GDDCREG T+++S+K PDP++  QTK KL +SEVR +  +
Sbjct: 299 VINNYAKNNNFLKKDDESLNGDDCREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIASN 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +++ L  +L E+P  A II+ K + AS  R AA+RAR++TRRK  LD  +LPGKLADCS
Sbjct: 359 IISEALDKFLLENPDTASIIMNKAIVASHARMAAKRAREMTRRKTALDSIALPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E+F+VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L + EI ++I
Sbjct: 419 SKDPSECEVFIVEGDSAGGSAKMGRDRRTQAILPLRGKILNVEKARLDRILGNAEIRSMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG D FDI+KLRYHKI+IMTDADVDG HIR L+LTF +R +  LI  GF+Y  +
Sbjct: 479 TAFGTGIG-DEFDISKLRYHKIVIMTDADVDGGHIRILMLTFLYRFLKPLIEEGFVYAAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY +  GK   Y+  +  LE    +   + +         G ++   L  
Sbjct: 538 PPLYLLKHGKEEHYLYSDYELEKLKEDLGPNAKYNIQRYKGLGEMNAEQLWE 589



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/121 (38%), Positives = 69/121 (57%), Gaps = 12/121 (9%)

Query: 691 RIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTIFS----IGRKGISMQRYKG 741
           R     IEE ++         L    ++  +      L+ +        +   ++QRYKG
Sbjct: 522 RFLKPLIEEGFVYAAQPPLYLLKHGKEEHYLYSDYE-LEKLKEDLGPNAK--YNIQRYKG 578

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSAL 801
           LGEMNA QLWETT++P+ R L ++ + DA QAD +F  LMG++VEPRREFIQE++  + L
Sbjct: 579 LGEMNAEQLWETTMDPENRLLWQIDLDDAMQADAMFDTLMGEKVEPRREFIQEHAQEAEL 638

Query: 802 D 802
           D
Sbjct: 639 D 639


>gi|255283818|ref|ZP_05348373.1| DNA gyrase, B subunit [Bryantella formatexigens DSM 14469]
 gi|255265701|gb|EET58906.1| DNA gyrase, B subunit [Bryantella formatexigens DSM 14469]
          Length = 641

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 305/585 (52%), Positives = 400/585 (68%), Gaps = 5/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N  Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY D + V
Sbjct: 6   NQEYGADQIQILEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGYCDTVDV 64

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+N D S TV DNGRGIP  ++ + GI A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 65  TINEDNSITVIDNGRGIPVGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 124

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ I  EG IY   +  G + + L VTG      TGT+++FLP  +IF   
Sbjct: 125 VVNALSEWLEVNIYHEGKIYFQRYERGHVMDKLKVTGECEPGKTGTKISFLPDKEIFEET 184

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+++TL+ RLRE++FL  +V+I L DKR  EP E    Y+GGI  FV+YL++ K PL Q
Sbjct: 185 VFDFNTLKQRLREMAFLTKNVKIILRDKREEEPVERVFHYEGGIREFVTYLNKGKTPLYQ 244

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G+RDNI +++AM+ ND Y E    F NNI   +GGTHL+G ++ALT+   +Y +
Sbjct: 245 DIIYCEGTRDNIYVEVAMQHNDSYTEGSYSFVNNITTPEGGTHLTGFKNALTKTFNAYAK 304

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K  + S+ G+D REG T+++SIK+ DP+F  QTK+KL +SE R  V+S V++ L 
Sbjct: 305 ANKLIKDTE-SLSGEDIREGMTAIVSIKIEDPQFEGQTKQKLGNSEARGAVDSVVSEQLM 363

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE+HP  AK+I+ K + A   R+AAR+ARDLTRRK  LD  SLPGKLADCS+++P   
Sbjct: 364 IYLEQHPQAAKLILDKSIMAQRAREAARKARDLTRRKSALDGLSLPGKLADCSDKNPANC 423

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK+ RSR  QAILPLRGKILNVE+AR D++ ++ EI  +ITA GTGI
Sbjct: 424 EIYIVEGDSAGGSAKEARSRATQAILPLRGKILNVEKARLDRIYANAEIKAMITAFGTGI 483

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + 
Sbjct: 484 -HDDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKLE 542

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           R K + Y   ++ L+  L      +          G +    L  
Sbjct: 543 RNKKVWYAYSDDELDAILKEVGRDQNNKIQRYKGLGEMDAEQLWE 587



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707
            G  ++ DI   R  + +      ++G+ I +    +  R   + I+E Y       L  
Sbjct: 481 TGIHDDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYK 540

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K+        LD I     +  +  +QRYKGLGEM+A QLWETT++P  R LLRV
Sbjct: 541 LERNKKVWYAYSDDELDAILKEVGRDQNNKIQRYKGLGEMDAEQLWETTMDPQKRVLLRV 600

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + + +  + D  F+ LMGD+VEPRREFI+EN++ +  LDI
Sbjct: 601 TMDEETSSELDLTFTTLMGDQVEPRREFIEENAVYAQNLDI 641


>gi|302670820|ref|YP_003830780.1| DNA topoisomerase IV subunit B ParE [Butyrivibrio proteoclasticus
           B316]
 gi|302395293|gb|ADL34198.1| DNA topoisomerase IV subunit B ParE [Butyrivibrio proteoclasticus
           B316]
          Length = 640

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 253/619 (40%), Positives = 353/619 (57%), Gaps = 14/619 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             YDA SI +L+GL+AV+KRP MYIG      GL+H++YE++DNA+DE L G+   I VT
Sbjct: 5   EQYDASSITVLEGLEAVRKRPGMYIGSV-TTRGLNHLVYEIVDNAVDEHLAGFCTQIHVT 63

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DGS TV DNGRGIP  +H + GI+A  V++T LHAGGKF+  +YK SGGLHGVG SV
Sbjct: 64  LEADGSATVEDNGRGIPVGMHAK-GITAERVVLTMLHAGGKFDNNAYKTSGGLHGVGSSV 122

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSSDIF 182
           VNALS+ + +RIK++G IYE S+  GI         L   GS   +TGT + FLP   IF
Sbjct: 123 VNALSTRMNVRIKKDGFIYEDSYERGIPTTKLVNGLLTPVGST-RETGTTINFLPDDTIF 181

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F  D ++ RL E ++LN S+ I   DKR      I      GI  F+  +++ K+ 
Sbjct: 182 EKTRFKEDDIKSRLHETAYLNPSLTIIFQDKRPGVEEYIEFHEPDGITGFIKDMNKSKEA 241

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +    +   G  + + +++A ++ + +HE VL F NNI   +GGTHL+G ++  T  I  
Sbjct: 242 VH-DVVSFSGESEGVEVEVAFQYVNEFHEEVLGFCNNIYNAEGGTHLTGFKTMFTNIINQ 300

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +    K    +  G D R G T+V+SIK PDPRF  QTK KL + +   VV    ND
Sbjct: 301 YARELNILKDKDNNFTGTDVRNGMTAVISIKHPDPRFEGQTKTKLDNQDAAKVVSKITND 360

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            ++ + + +    K I+     A+ +R    +A+     K         GKLA+C  +D 
Sbjct: 361 EMTRFFDRNLETLKAIIGCAEKAAKIRKTEEKAKTNMLTKQK-YSFDSNGKLANCISKDA 419

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A G
Sbjct: 420 SKCEIFIVEGDSAGGSAKMARDRNYQAILPIRGKILNVEKASIDKVLANAEIKTMINAFG 479

Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            G  +   + FDINKLRY KIIIM DADVDG HI TLLLT F+R MP LI+ G +Y+  P
Sbjct: 480 CGFSEGYGNDFDINKLRYDKIIIMADADVDGEHISTLLLTLFYRFMPELIYQGHVYVAMP 539

Query: 540 PLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PLY         +Y+ D+ +L  Y      +  ++ +     + ++      +D   ++ 
Sbjct: 540 PLYKAMPARGKEEYLYDDSALAKYRATHKGNFTLQRYKGLGEMDAQQLWETTLDPERRML 599

Query: 599 KLIKDFYPNHDKTFIEQAV 617
           K ++           E  +
Sbjct: 600 KAVEIEDAKMASQITELLM 618



 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 3/95 (3%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR-VKIT 768
            G +  +    S L    +  +   ++QRYKGLGEM+A QLWETTL+P+ R +L+ V+I 
Sbjct: 548 RGKEEYLYD-DSALAKYRATHKGNFTLQRYKGLGEMDAQQLWETTLDPE-RRMLKAVEIE 605

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           DA  A  +   LMG +V PRREFI +++  + LDI
Sbjct: 606 DAKMASQITELLMGVDVPPRREFIHQHATDAELDI 640


>gi|169627114|ref|YP_001700763.1| DNA gyrase subunit B [Mycobacterium abscessus ATCC 19977]
 gi|169239081|emb|CAM60109.1| DNA gyrase (subunit B) GyrB (DNA topoisomerase) [Mycobacterium
           abscessus]
          Length = 675

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/654 (40%), Positives = 380/654 (58%), Gaps = 39/654 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+       S Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ 
Sbjct: 1   MAAQKKSAKSEYSADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GYA  + VT+  DG   V D+GRGIP  +H   GI   +V+MT+LHAGGKF+  SY VSG
Sbjct: 60  GYATTVEVTMLADGGIQVKDDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDSYAVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG+SVVNALS+ L++ I R+G  ++  +        L   G+A   TGT V F   
Sbjct: 119 GLHGVGISVVNALSTKLEVEILRDGFEWQQVYTRSEP-GTLQK-GAATKKTGTTVRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
            +IF    ++++T+  RL+E +FLN  + I L D+R                        
Sbjct: 177 PEIFETTTYDFETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQ 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y  G+  FV +++R K  +  + +   G  +   +++AM+WN G
Sbjct: 237 AAESSAPHKVKNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W + +P +AK +V K + ++  
Sbjct: 357 VISVKVGEPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DG HI TLLLT  FR M  L+ +G +++ +PPLY +   ++       +   D L+   L
Sbjct: 536 DGQHISTLLLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRTQPEFAYSDRERDGLMEAGL 595

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               ++  D    I +      +D     +  +        +  ++ A  +   
Sbjct: 596 KAGKKINKDDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           L++     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LMEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675


>gi|222150258|ref|YP_002559411.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402]
 gi|222119380|dbj|BAH16715.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402]
          Length = 642

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 287/624 (45%), Positives = 406/624 (65%), Gaps = 6/624 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +      Y AD IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GYAD
Sbjct: 5   EQQNLDQYGADQIQVLEGLEAVRKRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYAD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + VT+  D    V+DNGRGIP D+ K+ G  A EVI+T LHAGGKF    YKVSGGLHG
Sbjct: 64  HVEVTIEEDNWIKVTDNGRGIPVDIQKKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHG 123

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALSS L++ + ++G IY  ++  G+    L V G   + TGT + F   S+IF
Sbjct: 124 VGSSVVNALSSTLEVYVHKDGKIYHQAYHRGVPAFDLKVIGET-DKTGTVIRFKADSEIF 182

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS-PEPREITMFYKGGIEAFVSYLDRHK 240
           +    + Y+ LQ R+REL+FLN  +++ + D+R   E R     Y+GGI+++V  L++ K
Sbjct: 183 TETTEYEYEILQKRIRELAFLNKGIKLEIKDEREQDEIRHDVYHYEGGIKSYVELLNKSK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L   PI I  +RD I +++++++N+GY  N+L + NNI   +GGTH  G + ALTR I
Sbjct: 243 ETLFPEPIYIHDNRDEIEVEISIQYNNGYSTNLLSYANNIHTYEGGTHEDGFKRALTRVI 302

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY  K+   K+    + G+D REG T+++SIK  +P+F  QTK KL ++EVR + ++  
Sbjct: 303 NSYGVKNKLIKEADEKLSGEDVREGITAIVSIKHGNPQFEGQTKTKLGNTEVRQITDNLF 362

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +    +L E+P  A+IIV+K + AS  R AA++AR++TRRK  L+I+SLPGKLADCS +
Sbjct: 363 AENFERFLLENPPIARIIVEKGIMASRARLAAKKAREVTRRKSGLEISSLPGKLADCSSK 422

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAK GR  + QAILPLRGKILNVE+AR D++L + EI ++ITA
Sbjct: 423 DPSISELYIVEGDSAGGSAKSGRDSKTQAILPLRGKILNVEKARLDRILGNNEIRSMITA 482

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  L+  G++YI +PP
Sbjct: 483 MGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQPP 541

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599
           L+ + +GK   YV +E  L+        +           G ++ + L     +      
Sbjct: 542 LFKVEQGKKKYYVYNERELDKLRKELPTTPKWQLARYKGLGEMNADQLWETTMNPEHRSM 601

Query: 600 LIKDFYPNHDKTFIEQAVISGVFN 623
           L        +   + + ++  V  
Sbjct: 602 LQVTLSDAIEADEVFEMLMGDVVE 625



 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 3/103 (2%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
            +  +     K  +      LD +           + RYKGLGEMNA QLWETT+NP+ R
Sbjct: 541 PLFKVEQGKKKYYVYNERE-LDKLRKELPTTPKWQLARYKGLGEMNADQLWETTMNPEHR 599

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           S+L+V ++DA +AD++F  LMGD VE RR FI+EN+  + +D+
Sbjct: 600 SMLQVTLSDAIEADEVFEMLMGDVVEHRRTFIEENAEYANVDV 642


>gi|268324621|emb|CBH38209.1| DNA gyrase subunit B [uncultured archaeon]
          Length = 635

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 398/619 (64%), Gaps = 16/619 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             SY A  IQ+LK L AV+KRP+MYIGDT G  GLHH+  EV+DN++DE++ G+   I V
Sbjct: 2   EESYSAKDIQVLKDLTAVRKRPAMYIGDT-GTRGLHHLANEVIDNSVDEAIIGFCTSIVV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++ D S TV+DNGRGIP D+H E  +SA EV+MT+LHAGGKF+ K YKV+GGLHGVG+S
Sbjct: 61  IIHPDNSVTVTDNGRGIPVDMHSEYNLSALEVVMTKLHAGGKFDNKVYKVAGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSSDIFS 183
           VVNALS W ++ + REG  Y   + +G     +     TG    + GT V F P S IF 
Sbjct: 121 VVNALSEWQEVEVLREGKRYYQRYEHGKAVCEVKELSYTGENNGECGTRVRFKPDSTIFG 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V +F+   L  RLREL+FLN  + +SL D+RS E R     Y+GGI +F+ Y++R+KK L
Sbjct: 181 VYEFDAHLLATRLRELAFLNRGLSLSLKDERSGEER--AFKYEGGITSFLEYINRNKKVL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                  +G +D++ + + +++ND Y EN+  F NN+   +GG HLSG ++ALTR +  Y
Sbjct: 239 HSPIT-FEGEKDDVKVAIGLQYNDSYAENIFSFVNNVKTVEGGKHLSGFKAALTRVLNEY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            + +      K ++ GDD REG  +V+S+K+ +P+F  QTK KL +SEV+ +VESFV + 
Sbjct: 298 GKSNNML--KKVNLDGDDVREGLAAVISLKLREPQFEGQTKTKLGNSEVKGIVESFVREH 355

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L+E+P +   I++K L+AS  R+AAR AR++ R+K     + LPGKLADCSERDP 
Sbjct: 356 LWDFLDENPKDGDAIIRKALEASRAREAARHAREIVRKKDSFADS-LPGKLADCSERDPA 414

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K E+++VEGDSAGGSAKQ R +  QAILP+RGKILNVE+AR DK+L S EI TLITALG 
Sbjct: 415 KKEIYIVEGDSAGGSAKQARDKNFQAILPIRGKILNVEKARLDKILKSNEIRTLITALGA 474

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG D FD+ K RY+KIIIM+DADVDGAHIRTLLLTFF+R M  L+    +Y+  PPLY 
Sbjct: 475 GIG-DDFDMEKARYNKIIIMSDADVDGAHIRTLLLTFFYRYMQELVSANHIYVALPPLYM 533

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK ++Y   ++   + L   ++ E      D+   I        ++     +  +  
Sbjct: 534 VKKGKEIRYAFSDDEYVNILDELNVKE-----GDAGVKIQHYKGLGEMNPEQLWETTMNP 588

Query: 604 FYPNHDKTFIEQAVISGVF 622
                    +E A      
Sbjct: 589 ATRGIKLVTLEDAAEVDWL 607



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 9/131 (6%)

Query: 681 SIFSFGSKYKRIF-SNRIEENYLTILSLICNGDKIKITGPCS-----LLDTI-FSIGRKG 733
            + +F  +Y +   S       L  L ++  G +I+           +LD +    G  G
Sbjct: 506 LLLTFFYRYMQELVSANHIYVALPPLYMVKKGKEIR-YAFSDDEYVNILDELNVKEGDAG 564

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +Q YKGLGEMN  QLWETT+NP TR +  V + DA++ D LF+ LMG+EVEPRR FIQ
Sbjct: 565 VKIQHYKGLGEMNPEQLWETTMNPATRGIKLVTLEDAAEVDWLFTVLMGEEVEPRRNFIQ 624

Query: 794 ENSLPS-ALDI 803
            ++     LDI
Sbjct: 625 AHAKEVMNLDI 635


>gi|52549974|gb|AAU83823.1| DNA gyrase subunit B [uncultured archaeon GZfos34A6]
          Length = 635

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 289/619 (46%), Positives = 398/619 (64%), Gaps = 16/619 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             SY A  IQ+LK L AV+KRP+MYIGDT G  GLHH+  EV+DN++DE+L G+   I V
Sbjct: 2   EESYSAKDIQVLKDLTAVRKRPAMYIGDT-GTRGLHHLANEVIDNSVDEALIGFCTSIVV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++ D S TV+DNGRGIP D+H E  +SA EV+MT+LHAGGKF+ K YKV+GGLHGVG+S
Sbjct: 61  IIHPDNSVTVTDNGRGIPVDMHSEYNLSALEVVMTKLHAGGKFDNKVYKVAGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSSDIFS 183
           VVNALS W ++ + R+G  Y   +  G     +     T     + GT VTF P S IF 
Sbjct: 121 VVNALSEWQEVEVVRDGKRYFQRYEYGKPVCEVKELSYTDENNGECGTRVTFKPDSTIFG 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V +F+   L  RLREL+FLN  + +SL D+RS E R     Y GGI +F+ Y++R+KK L
Sbjct: 181 VYEFDAHILATRLRELAFLNRGLLLSLKDERSGEDR--AFKYDGGITSFLEYINRNKKVL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                  +G +D++ + + +++ND Y EN+  F NN+   +GG HLSG ++ALTR +  Y
Sbjct: 239 HSPIT-FEGEKDDVKVAIGLQYNDSYAENIFSFVNNVKTVEGGKHLSGFKAALTRVLNEY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            + +      K ++ GDD REG  +++S+K+ +P+F  QTK KL +SEV+ +VESFV + 
Sbjct: 298 GKSNNML--KKVNLDGDDVREGLAAIISLKLREPQFEGQTKTKLGNSEVKGIVESFVREH 355

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L+E+P +A  I++K L+AS  R+AAR AR++ R+K     + LPGKLADCSERDP 
Sbjct: 356 LWDFLDENPKDADAIIRKALEASRAREAARHAREIVRKKDSFADS-LPGKLADCSERDPA 414

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K E+++VEGDSAGGSAKQ R +  QAILP+RGKILNVE+AR DK+L S EI TLITALG 
Sbjct: 415 KKEIYIVEGDSAGGSAKQARDKNFQAILPIRGKILNVEKARLDKILKSNEIRTLITALGA 474

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG D FD+ K RY+KIIIM+DADVDGAHIRTLLLTFF+R M  L+    +Y+  PPLY 
Sbjct: 475 GIG-DDFDMQKARYNKIIIMSDADVDGAHIRTLLLTFFYRYMQELVTANHIYVALPPLYM 533

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +GK ++Y   ++   + L + ++ E      D+   I        ++     +  +  
Sbjct: 534 VKKGKEIRYAFSDDEYVNILDDLNVKE-----GDAGVKIQHYKGLGEMNPEQLWETTMNP 588

Query: 604 FYPNHDKTFIEQAVISGVF 622
                    +E A      
Sbjct: 589 ATRGIKLVTLEDAAEVDWL 607



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 9/131 (6%)

Query: 681 SIFSFGSKYKRIF-SNRIEENYLTILSLICNGDKIKITGPCS-----LLDTI-FSIGRKG 733
            + +F  +Y +   +       L  L ++  G +I+           +LD +    G  G
Sbjct: 506 LLLTFFYRYMQELVTANHIYVALPPLYMVKKGKEIR-YAFSDDEYVNILDDLNVKEGDAG 564

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +Q YKGLGEMN  QLWETT+NP TR +  V + DA++ D LF+ LMG+EVEPRR FI 
Sbjct: 565 VKIQHYKGLGEMNPEQLWETTMNPATRGIKLVTLEDAAEVDWLFTVLMGEEVEPRRNFIH 624

Query: 794 ENSLPS-ALDI 803
            ++     LDI
Sbjct: 625 AHAKEVMNLDI 635


>gi|295704654|ref|YP_003597729.1| DNA topoisomerase IV subunit B [Bacillus megaterium DSM 319]
 gi|294802313|gb|ADF39379.1| DNA topoisomerase IV, subunit B [Bacillus megaterium DSM 319]
          Length = 658

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 266/566 (46%), Positives = 370/566 (65%), Gaps = 13/566 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q  +Y+ D+IQ+L+GLDAV+KRP MYIG TD   GLHH++YE++DN++DE+L GY
Sbjct: 1   MARK-QQFNYNEDAIQVLEGLDAVRKRPGMYIGSTD-TRGLHHLVYEIVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GEEIIVTIHKDNSISVQDKGRGMPTGMH-KLGKPTPEVILTILHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G IYE  F N G     L   G     TGT + F P +
Sbjct: 118 HGVGASVVNALSEWLTVTIHRDGFIYEQRFENGGKPVTTLEKIGKTK-KTGTTIHFKPDA 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   +NYDTL  RLRE +FL    +I LIDKR    R    +Y+ GI+AFVSYL+  
Sbjct: 177 TIFSTTVYNYDTLCERLRESAFLLKGFKIELIDKRHD--RHDIFYYETGIQAFVSYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +  +G   NI ++ A ++NDGY E +L F NN+  KDGGTH SG +SA+TR 
Sbjct: 235 KDSLHP-VVFFEGIHHNIEVEFAFQFNDGYSETILSFVNNVRTKDGGTHESGAKSAMTRA 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 294 FNEYARKVSLLKEKDKNLEGTDIREGLGAIVSVRIPEELLQFEGQTKGKLGTSEARSSVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + +++ L+ +LEE+P  + ++VKK + A+  R+AAR+AR+     +K       L GKL 
Sbjct: 354 AVISEKLAYFLEENPDVSSLLVKKAIKAAQAREAARKAREDARNGKKRKRQETVLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+++EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 414 PAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEIS 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F I+ + Y KI+IMTDAD DGAHI+ LLLTFF+R M  L+  G ++
Sbjct: 474 TIIHAIGGGVGAD-FTIDDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLVEAGKVF 532

Query: 536 IIKPPLYGITRGKSLQYVKDEESLED 561
           I  PPLY +++G   + V +    ++
Sbjct: 533 IALPPLYKVSKGSGKKEVVEYSWSDE 558



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    +++  ++ I       +     N D +V           +    
Sbjct: 455 VINTEKAKLQDIFKNEEISTIIHAIGGGVGADFTIDDINYDKIVIMTDADTDGAHIQVLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISM 736
             F +      + + ++      +  +     K ++         L   I  +GR G  +
Sbjct: 515 LTFFYRYMKPLVEAGKVFIALPPLYKVSKGSGKKEVVEYSWSDEELQGAIDKVGR-GYMI 573

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QRYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++AD   + LMGD+VEPRR++I+ N
Sbjct: 574 QRYKGLGEMNADQLWETTMNPETRTLIRVRIDDAARADRRVTTLMGDKVEPRRKWIESN 632


>gi|294499300|ref|YP_003563000.1| DNA topoisomerase IV subunit B [Bacillus megaterium QM B1551]
 gi|294349237|gb|ADE69566.1| DNA topoisomerase IV, subunit B [Bacillus megaterium QM B1551]
          Length = 658

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 266/566 (46%), Positives = 369/566 (65%), Gaps = 13/566 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q  +Y+ D+IQ+L+GLDAV+KRP MYIG TD   GLHH++YE++DN++DE+L GY
Sbjct: 1   MARK-QQFNYNEDAIQVLEGLDAVRKRPGMYIGSTD-TRGLHHLVYEIVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GEEIIVTIHKDNSISVQDKGRGMPTGMH-KLGKPTPEVILTILHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G IYE  F N G     L   G     TGT + F P +
Sbjct: 118 HGVGASVVNALSEWLTVTIHRDGFIYEQRFENGGKPVTTLEKIGKTK-KTGTTIHFKPDA 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   +NYDTL  RLRE +FL    +I LIDKR    R     Y+ GI+AFVSYL+  
Sbjct: 177 TIFSTTVYNYDTLCERLRESAFLLKGFKIELIDKRHD--RHDIFHYETGIQAFVSYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +  +G   NI ++ A ++NDGY E +L F NN+  KDGGTH SG +SA+TR 
Sbjct: 235 KDSLHP-VVFFEGIHHNIEVEFAFQFNDGYSETILSFVNNVRTKDGGTHESGAKSAMTRA 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 294 FNEYARKVSLLKEKDKNLEGTDIREGLGAIVSVRIPEELLQFEGQTKGKLGTSEARSSVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + +++ L+ +LEE+P  + ++VKK + A+  R+AAR+AR+     +K       L GKL 
Sbjct: 354 AVISEKLAYFLEENPDVSSLLVKKAIKAAQAREAARKAREDARNGKKRKRQETVLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+++EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 414 PAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEIS 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F I+ + Y KI+IMTDAD DGAHI+ LLLTFF+R M  L+  G ++
Sbjct: 474 TIIHAIGGGVGAD-FTIDDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLVEAGKVF 532

Query: 536 IIKPPLYGITRGKSLQYVKDEESLED 561
           I  PPLY +++G   + V +    ++
Sbjct: 533 IALPPLYKVSKGSGKKEVVEYSWSDE 558



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    +++  ++ I       +     N D +V           +    
Sbjct: 455 VINTEKAKLQDIFKNEEISTIIHAIGGGVGADFTIDDINYDKIVIMTDADTDGAHIQVLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISM 736
             F +      + + ++      +  +     K ++         L   I  +GR G  +
Sbjct: 515 LTFFYRYMKPLVEAGKVFIALPPLYKVSKGSGKKEVVEYSWSDEELQGAIDKVGR-GYMI 573

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QRYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++AD   + LMGD+VEPRR++I+ N
Sbjct: 574 QRYKGLGEMNADQLWETTMNPETRTLIRVRIDDAARADRRVTTLMGDKVEPRRKWIESN 632


>gi|325661698|ref|ZP_08150321.1| hypothetical protein HMPREF0490_01056 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331084709|ref|ZP_08333797.1| hypothetical protein HMPREF0987_00100 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471951|gb|EGC75166.1| hypothetical protein HMPREF0490_01056 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410803|gb|EGG90225.1| hypothetical protein HMPREF0987_00100 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 640

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 252/640 (39%), Positives = 367/640 (57%), Gaps = 14/640 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YDADSI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L G+ + I+
Sbjct: 3   KKNTYDADSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGFCNKIS 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L  DGS TV DNGRG+P  +H++ GISAA ++ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 62  VFLEKDGSATVEDNGRGVPVGMHQK-GISAARLVYTTLHAGGKFDDSAYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS ++ ++I R+G ++   +  GI    L      V       TGT V FLP  +
Sbjct: 121 SVVNALSEYMDVKISRDGGVHHDRYERGIPVVELEDGLLPVIAKT-RKTGTLVNFLPDGE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  D ++ RL E ++LN  + I   D+R  +   I      GI  F+  +++ K
Sbjct: 180 IFEKTKFKADEVKSRLHETAYLNPELTIIFEDRRREQTEHIEFHEPDGIIGFIKDMNQKK 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +   P+  +G  + I +++A ++ + +HENVL F NNI   +GGTHL+G ++  T  I
Sbjct: 240 EVIH-EPVYFKGEAEGIEVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVI 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K+   +  G D R G T+++S+K PDPRF  QTK KL + +         
Sbjct: 299 NQYARELGILKEKDSNFTGADIRNGMTAIVSVKHPDPRFEGQTKTKLDNPDASKATGKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + +  + + +    K ++     A+ +R    RA+     K         GKLA+C  R
Sbjct: 359 GEEIVRYFDRNLETLKKVIGCAEKAAKIRKTEERAKTNLLTKQK-YSFDSNGKLANCESR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DASKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI  G +YI 
Sbjct: 478 FGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIFEGHVYIA 537

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY    +    +Y+ D+++LE Y   Q+    ++ +     + ++      ++   +
Sbjct: 538 MPPLYKAMPKKGEEEYLYDDKALEQYRKRQTGPFTLQRYKGLGEMDAEQLWETTLNPETR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           + KL++        +  E  + S V    +    N + A 
Sbjct: 598 MLKLVEIEDARMASSVTEMLMGSDVPPRRAFIYENAAEAE 637



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 57/99 (57%), Gaps = 9/99 (9%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G++  +       D      RK  +    +QRYKGLGEM+A QLWETTLNP+TR L  
Sbjct: 547 KKGEEEYLYD-----DKALEQYRKRQTGPFTLQRYKGLGEMDAEQLWETTLNPETRMLKL 601

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           V+I DA  A  +   LMG +V PRR FI EN+  + LDI
Sbjct: 602 VEIEDARMASSVTEMLMGSDVPPRRAFIYENAAEAELDI 640


>gi|28378501|ref|NP_785393.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum WCFS1]
 gi|254556715|ref|YP_003063132.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum JDM1]
 gi|300767447|ref|ZP_07077359.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180658|ref|YP_003924786.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271337|emb|CAD64242.1| topoisomerase IV, subunit B [Lactobacillus plantarum WCFS1]
 gi|254045642|gb|ACT62435.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum JDM1]
 gi|300495266|gb|EFK30422.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046149|gb|ADN98692.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 668

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 262/667 (39%), Positives = 377/667 (56%), Gaps = 19/667 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       YD  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKSPK--YDDSSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S TV D+GRG+P  +H   GI   EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GKEINVIIHADNSITVVDHGRGMPVGMHAS-GIPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSS L + I R+G  Y   F + G     L   G     TGT +TF P +
Sbjct: 117 HGVGASVVNALSSELTVTIVRDGYRYVEHFKDGGHPVGTLEKKGKTNKPTGTTMTFKPDA 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF+   +N+ TL  RLRE +FL   V+I+L D+R  + +E+   Y+ GI+AFVSYL+  
Sbjct: 177 SIFTTTVYNFQTLAERLRESAFLLKGVKITLTDERENQQQELVFHYEDGIKAFVSYLNED 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  +   +   G+++ + +++A ++NDGY EN+L F NN+   DGGTH  G RSA T+ 
Sbjct: 237 -KDTLGDIMFFDGTKEGVEVEVAAQYNDGYSENLLSFVNNVRTPDGGTHEVGFRSAWTKA 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K   +++ G D REG ++V+S+++P+   +F  QTKEKL + E R++V+
Sbjct: 296 FNEYARKVGLLKDKDKNLEGSDVREGLSAVISLRVPENLLQFEGQTKEKLGTPEARTIVD 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L  +L E+   A+++++K   A   R+AAR+ARD     ++       L GKL 
Sbjct: 356 NIVSEQLQFFLMENGEFAQMLIRKSTKARQAREAARKARDESRNGKRRHKQERLLSGKLT 415

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   ++ ++EI 
Sbjct: 416 PAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADIVKNEEIN 475

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   FDI    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +Y
Sbjct: 476 TMIYTIGAGVG-PEFDIKASNYDKIIIMTDADTDGAHIQILLLTFFYKYMRPMIDAGKIY 534

Query: 536 IIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY + + ++ Q   +    ++                     G ++   L     
Sbjct: 535 IALPPLYRLQKKQNKQLRTEYAWTDEELTLKTKSFGKGYALQRYKGLGEMNAEQLWET-- 592

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +D   +                      +  +     + S +   L+      +  
Sbjct: 593 ---TMDPEKRTLVRVRIDDAALAEKRVTTLMGDKVEPRRKWIESNVHFNLDEDGSLLDNE 649

Query: 653 WHGSINN 659
              S + 
Sbjct: 650 AVSSAHE 656



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 102/265 (38%), Gaps = 7/265 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++                 +    S  +          ++   ++     
Sbjct: 377 IRKSTKARQAREAARKARDESRNGKRRHKQERLLSGKLTPAQSKNAKKNELFLVEGDSAG 436

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +    +N 
Sbjct: 437 GSAKQGRDRKFQAILPLRGKVLNTEKAKLADIVKNEEINTMIYTIGAGVGPEFDIKASNY 496

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI---KIT 717
           D ++           +      F +      I + +I      +  L    +K    +  
Sbjct: 497 DKIIIMTDADTDGAHIQILLLTFFYKYMRPMIDAGKIYIALPPLYRLQKKQNKQLRTEYA 556

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L        KG ++QRYKGLGEMNA QLWETT++P+ R+L+RV+I DA+ A+   
Sbjct: 557 WTDEELTLKTKSFGKGYALQRYKGLGEMNAEQLWETTMDPEKRTLVRVRIDDAALAEKRV 616

Query: 778 SRLMGDEVEPRREFIQENSLPSALD 802
           + LMGD+VEPRR++I+ N     LD
Sbjct: 617 TTLMGDKVEPRRKWIESNVHF-NLD 640


>gi|311068376|ref|YP_003973299.1| DNA topoisomerase IV subunit B [Bacillus atrophaeus 1942]
 gi|310868893|gb|ADP32368.1| DNA topoisomerase IV subunit B [Bacillus atrophaeus 1942]
          Length = 656

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 266/661 (40%), Positives = 394/661 (59%), Gaps = 22/661 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L G+
Sbjct: 1   MARKQQQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEVLAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S +V D GRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 60  GDHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVIFTVLHAGGKFGQGGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I+R+G +Y+  F N G     L   G+    +GT   F P  
Sbjct: 119 HGVGASVVNALSEWLTVTIERDGYVYKQRFENGGKPVTSLDKIGTTK-KSGTLTHFKPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +FSV  +N++TL  RLRE +FL   ++I LID+R     E   +Y+ GIEAFV+     
Sbjct: 178 AMFSVTTYNFETLSERLRESAFLLKGLKIELIDERH--QVEEVFYYENGIEAFVA-YLNE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +K  +   +  +G  + I +D A ++NDGY EN+L F NN+  KDGGTH SG ++A+TR 
Sbjct: 235 EKDSLSEVVSFEGEHNQIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 295 FNEYARKVSLLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + +++ L+ +LEE+   A ++VKK + AS  R+AAR+AR+   + +K     A+L GKL 
Sbjct: 355 AVISEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 415 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F++  + Y KI+IMTDAD DGAHI+ LLLTFF+R M  LI +G ++
Sbjct: 475 TIIHAIGGGVGAD-FEVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 533

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E ++D L        I+ +    G ++ + L    
Sbjct: 534 IALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGKGYTIQRY-KGLGEMNADQLWET- 591

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                ++   +                      +  +     +   +A  L+  +   E 
Sbjct: 592 ----TMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 647

Query: 652 S 652
            
Sbjct: 648 E 648



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 6/265 (2%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +     + +       ++               +      S  +          ++   
Sbjct: 369 RETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYL 428

Query: 597 IDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
           ++           +    QAV+     V N E  +  ++    ++   ++ I       +
Sbjct: 429 VEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADF 488

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                N D +V           +      F +      I   ++      +  +     K
Sbjct: 489 EVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGK 548

Query: 714 IKI---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
            +I         +D +     KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA
Sbjct: 549 KEIIEYAWSDEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDA 608

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++ +   + LMGD+VEPRR++I++N
Sbjct: 609 ARVERRVTTLMGDKVEPRRKWIEKN 633


>gi|82798478|gb|ABB91902.1| DNA gyrase subunit B [Acholeplasma vituli]
 gi|82798480|gb|ABB91903.1| DNA gyrase subunit B [Acholeplasma vituli]
          Length = 546

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/547 (49%), Positives = 372/547 (68%), Gaps = 5/547 (0%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T GE GLHH+++E++DN+IDES+ GYA  I++ +       V+D+GRGIP D+H 
Sbjct: 1   MYIGST-GERGLHHLVWEIVDNSIDESMVGYASEISLEIQKGNIIRVTDDGRGIPVDIHA 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           +   SA E I+T LHAGGKF+ KSYKVSGGLHGVG SVVNALSSW ++ I+R G +Y+  
Sbjct: 60  KTKKSAVETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTIRRNGLLYQQE 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQI 208
           +  GI    L V G + + TGTE+ F    ++F     ++++TL++R++EL+FLN  ++I
Sbjct: 120 YKKGIPQYDLKVIGESTH-TGTEIEFQADPEVFTETTTYDFETLRNRIQELAFLNRHIKI 178

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
           S+ D+R   P      Y+GGI+ +V++L+ +K  +    +  Q   DNI+++LA+++ND 
Sbjct: 179 SIEDQRGETPVRFEYQYEGGIQEYVTFLNGNKGIVHPEIVYAQKEVDNITVELALQYNDS 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y  NV  FTNNI   +GG H  G + ALTR I +Y + +   K    S IG+D REG T+
Sbjct: 239 YATNVFSFTNNIHTHEGGMHEDGFKLALTRVIGNYAKDNNILK-KDESFIGEDTREGLTA 297

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++S+K P+P+F  QTK KL + EVR +V     + L  +L E+P  AK I+ KVL AS  
Sbjct: 298 IISVKHPNPQFEGQTKTKLGNPEVRQIVSQITGEALERFLLENPTAAKSIMDKVLMASRA 357

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+A++ TRRK  LD+     KLADC  R P++SE+++VEGDSAGGSAKQGR    Q
Sbjct: 358 RIAARKAKEATRRKSPLDMLGFASKLADCRNRKPEESEIYIVEGDSAGGSAKQGRDSAFQ 417

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK+LNVE+AR DK LS++EI ++I A GTGIG+D FDI K RYHKI+IMTDADV
Sbjct: 418 AILPLRGKVLNVEKARLDKALSNKEILSMIQAFGTGIGED-FDITKARYHKIVIMTDADV 476

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DGAHIRTL+LTF FR M  LI  G++Y+ +PPLY +  GK ++YV DEE L   L     
Sbjct: 477 DGAHIRTLMLTFLFRYMKPLIDFGYVYVAQPPLYKVQSGKRIEYVYDEERLRVVLEQMGG 536

Query: 569 SEEIELF 575
              I+ +
Sbjct: 537 RPAIQRY 543


>gi|39938984|ref|NP_950750.1| DNA gyrase beta subunit [Onion yellows phytoplasma OY-M]
 gi|39722093|dbj|BAD04583.1| DNA gyrase beta subunit [Onion yellows phytoplasma OY-M]
          Length = 671

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/673 (39%), Positives = 389/673 (57%), Gaps = 43/673 (6%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+ADSIQIL+GL+AV+KRP MYIG T  + GLHH+++E++DN+IDE+L G+A+ IT+ 
Sbjct: 2   KNYNADSIQILEGLEAVRKRPGMYIGST-AQKGLHHLVWEIVDNSIDEALAGHANKITLE 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +      +VSDNGRGIP D+H + G  A E I+T LHAGGKF+  SYKVSGGLHGVG SV
Sbjct: 61  ILPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDNSSYKVSGGLHGVGASV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QD 186
           VNALS+W  + I     IY   +  GI  +PL V G   N  GT + FL   +IF     
Sbjct: 121 VNALSTWFTVEIHLNKQIYFQKYEKGIAVSPLEVIGKT-NKRGTTIQFLADPEIFQETTI 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK-PLMQ 245
           +N+DTL+ R+++LSFLN  +++++ DKR  +       ++ G++ ++ +++   K     
Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLNIADKRYEKETVFNFCHEKGLQDYLDFINTSHKQTPFH 239

Query: 246 SPIRIQGSRDNISIDLAMRWND--------------------------GYHENVLCFTNN 279
               ++     ++ ++   +                              ++ +  F NN
Sbjct: 240 EIFYLEKEFQKLAFEIVFEYTTKIRPPKKDAQGNEIEEKEGKDAIPNYTQNQKIFSFVNN 299

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IP  +GGTH  G + AL R I+ Y  K F   K    ++ +D  EG T+++S+K   P+F
Sbjct: 300 IPTHEGGTHEEGFKLALNRVISKYA-KEFNLLKKDEHLLSEDILEGITAIISLKHQYPQF 358

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EVR +      + L  +L E+P +++ I+ K L ++  R AA+RAR++ 
Sbjct: 359 EGQTKAKLANTEVRQITSQLFGEFLEKYLLENPQDSRKIIDKCLLSANARLAAKRAREVV 418

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           R K  LD      KLADC  +DP  SEL++VEGDSAGGSAKQGR    QAILPLRGK+LN
Sbjct: 419 RNK-PLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVLN 477

Query: 460 VERARFDKMLSSQEIGTLITALGTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           VE++   K+L+++EI +LI A+G GI       F+++K+RYHKIIIMTDADVDGAHIRTL
Sbjct: 478 VEKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNMDKIRYHKIIIMTDADVDGAHIRTL 537

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELF 575
           LLTFFFR    LI  G++Y  +PPLY   +GK + +Y  DE++ + +    +L +     
Sbjct: 538 LLTFFFRHFRKLIEKGYIYFARPPLYKYQKGKGAPKYFYDEKAKQTFATKNNLKDG-FQR 596

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
               G ++ N L         +D   +       K  +           E+DQ  N+ + 
Sbjct: 597 YKGLGEMNPNQLWET-----TMDPETRTLLKASLKDALNALSDEEAL-MEADQTFNMLMG 650

Query: 636 SKLANRLNFIAEK 648
            K+  R NFI EK
Sbjct: 651 EKVLPRKNFILEK 663



 Score =  140 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 10/77 (12%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA----------SQADDLFSRLMGDEVE 786
           QRYKGLGEMN +QLWETT++P+TR+LL+  + DA           +AD  F+ LMG++V 
Sbjct: 595 QRYKGLGEMNPNQLWETTMDPETRTLLKASLKDALNALSDEEALMEADQTFNMLMGEKVL 654

Query: 787 PRREFIQENSLPSALDI 803
           PR+ FI E +L + LD+
Sbjct: 655 PRKNFILEKALEADLDV 671


>gi|172056050|ref|YP_001812510.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15]
 gi|171988571|gb|ACB59493.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15]
          Length = 643

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 297/649 (45%), Positives = 418/649 (64%), Gaps = 13/649 (2%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS++        Y AD IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L
Sbjct: 1   MSNHEDMELEQGYGADQIQVLEGLEAVRKRPGMYIGST-ASKGLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+    S  V DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVS
Sbjct: 60  AGYCDTIKVTIEPGNSILVEDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L++ +KR   +Y  ++  G+    L + G    +TGT + F P
Sbjct: 120 GGLHGVGASVVNALSTKLEVFVKRNEKLYYQAYHRGVPAADLEIIG-TSEETGTMIRFFP 178

Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF    +++YD L  RLREL+FLN  + I + D R+ EP   +  Y+GGI+++V +L
Sbjct: 179 DDEIFQETLEYDYDLLATRLRELAFLNKGLTIEITDDRADEPITRSFHYEGGIKSYVEHL 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +R K+ + + P+ + G+RD I +++A+++NDG+  N+  FTNNIP  +GGTH +G ++AL
Sbjct: 239 NRSKEVVHEEPVYVHGNRDGIEVEVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y +K    K+   ++ G+D REG T+++SIK P+P+F  QTK KL +S+ R+  
Sbjct: 299 TRVINDYAKKFGLMKEADGTLSGEDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTAT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ++  +     ++ E+P  A+ IV+K + AS  R AA+RAR+LTRRKGVL+++SLPGKLAD
Sbjct: 359 DTLFSSAFEQFMMENPTSARAIVEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS RD   SE+++VEGDSAGGSAK GR R  QAILP+RGKILNVE+AR DK+L + EI T
Sbjct: 419 CSSRDATISEIYIVEGDSAGGSAKSGRDRHFQAILPIRGKILNVEKARLDKILGNNEIRT 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +ITALGT IG + F+I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  L+ +G++YI
Sbjct: 479 IITALGTSIGSE-FNIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDAL 595
            +PPLYGI +GK++ YV +E  L + L     +           G +    L        
Sbjct: 538 AQPPLYGIKQGKNITYVHNERELNEALAALPENARYDIQRYKGLGEMDPEQLWET----- 592

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +D   +       +  IE   +  +   +  +     + S      N 
Sbjct: 593 TMDPSGRQMLRVELQDAIEADEVFDILMGDQVEPRRDFIQSHAHYVKNL 641



 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 8/201 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E  +   +   +++   +  +       ++        ++  
Sbjct: 447 RHFQAIL--PIRGKILNVEKARLDKILGNNEIRTIITALGTSIGSEFNIEKARYHKVIIM 504

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL---L 723
               V    +      F +      +    +      +  +    +   +     L   L
Sbjct: 505 TDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPPLYGIKQGKNITYVHNERELNEAL 564

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
             +    R    +QRYKGLGEM+  QLWETT++P  R +LRV++ DA +AD++F  LMGD
Sbjct: 565 AALPENAR--YDIQRYKGLGEMDPEQLWETTMDPSGRQMLRVELQDAIEADEVFDILMGD 622

Query: 784 EVEPRREFIQENSLPS-ALDI 803
           +VEPRR+FIQ ++     LDI
Sbjct: 623 QVEPRRDFIQSHAHYVKNLDI 643


>gi|172039685|ref|YP_001799399.1| DNA gyrase subunit B [Corynebacterium urealyticum DSM 7109]
 gi|171850989|emb|CAQ03965.1| DNA gyrase subunit B [Corynebacterium urealyticum DSM 7109]
          Length = 699

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 275/649 (42%), Positives = 383/649 (59%), Gaps = 43/649 (6%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   YDA SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA  ++
Sbjct: 25  KPGDYDASSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYAKKVS 83

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGS  VSD+GRGIP ++H   G    +V+MT+LHAGGKF+  SY VSGGLHGVG+
Sbjct: 84  VTLKEDGSVEVSDDGRGIPVEMHPS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGI 142

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ ++ RI R+G  +   F+N +     +V G     +GT   F P  +IF   
Sbjct: 143 SVVNALSTRVETRIVRDGFEWYQEFVNAVPQE--LVQGKKKRGSGTTQRFWPDPEIFETV 200

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----------------------- 222
           +FN+DT+  RL+E++FLN  + I+L D+R                               
Sbjct: 201 EFNFDTVAKRLQEMAFLNKGLTITLTDERPEAIEAEDPEEQLEDLTEQAEAPKSAEERQA 260

Query: 223 --------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                           Y  G++ +V++++R K+P+  + +      ++  +++A++WNDG
Sbjct: 261 EEEAKKKKGPRTKTYHYPEGLKDYVAFINRKKQPIHPTIVSFDAKGEDHEVEVALQWNDG 320

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y ++V  F N I   +GGTH  G R+A+T  I  Y       K+   ++ GDD REG  +
Sbjct: 321 YQQSVHTFANTINTFEGGTHEEGFRAAMTSLINRYARDQKLLKEKDSNLTGDDVREGLAA 380

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+++ DP+F  QTK KL ++E+R  V+  +N+ LS WL+ +P EAK+IV+K + ++  
Sbjct: 381 VISVRVGDPQFEGQTKTKLGNTEIRGFVQRAINEHLSDWLDANPAEAKVIVQKAVASAHA 440

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRK   D+  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    Q
Sbjct: 441 RQAARKARDLVRRKSASDMGGLPGKLADCRSKDPIKSELYVVEGDSAGGSAKSGRDSMYQ 500

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKILNVE+AR D++L + E+  +ITALGTGI  D FDINKLRYHKI++M DADV
Sbjct: 501 AILPLRGKILNVEKARMDRVLKNAEVQAIITALGTGI-HDEFDINKLRYHKIVLMADADV 559

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  L+  G++Y+ +PPLY +  GK    Y   +   ++ L    
Sbjct: 560 DGQHIATLLLTLLFRLMRPLVEGGYVYLAQPPLYKLKWGKGEPGYAFSDRERDEQLKKGL 619

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
                    D           N  +                     E A
Sbjct: 620 EEGRKIDTDDGIQRYKGLGEMNPKELWETTMDPTTRTLRQVSLEDAEAA 668



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 8/83 (9%)

Query: 727 FSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
              GRK     G  +QRYKGLGEMN  +LWETT++P TR+L +V + DA  AD+LFS LM
Sbjct: 619 LEEGRKIDTDDG--IQRYKGLGEMNPKELWETTMDPTTRTLRQVSLEDAEAADELFSILM 676

Query: 782 GDEVEPRREFIQENSLPSA-LDI 803
           GD+V  RR FI  N+     LD+
Sbjct: 677 GDDVVARRSFITRNARDVRFLDV 699


>gi|314934956|ref|ZP_07842315.1| DNA gyrase, B subunit [Staphylococcus caprae C87]
 gi|313652886|gb|EFS16649.1| DNA gyrase, B subunit [Staphylococcus caprae C87]
          Length = 644

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 299/639 (46%), Positives = 415/639 (64%), Gaps = 5/639 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 7   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 65

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 66  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 125

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 126 GVGSSVVNALSQDLEVYVYRNDTIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKADGEI 184

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E RE +  Y+GGI+++V  L+ +K
Sbjct: 185 FTETTVYNYETLQQRIRELAFLNKGIQITLRDEREEEGREDSYHYEGGIKSYVELLNENK 244

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL + PI I  ++D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR +
Sbjct: 245 EPLHEEPIYIHQTKDDIEVEIALQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRIL 304

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY  +S   K+DK  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+   
Sbjct: 305 NSYGIQSKIIKEDKDKLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLF 364

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +    +L EHP   +IIV+K + AS  R AA++AR++TRRK  LD++SLPGKLADCS +
Sbjct: 365 AEYFERFLFEHPAVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSK 424

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P++SE+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +ITA
Sbjct: 425 NPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITA 484

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +PP
Sbjct: 485 FGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP 543

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY +T+GK   YV ++  L+      + +           G ++ + L     +      
Sbjct: 544 LYKLTQGKQKYYVFNDRELDKLKAELNPTPKWSISRYKGLGEMNADQLWETTMNPEHRSM 603

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L        D     + ++  V         + ++ + L
Sbjct: 604 LQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANL 642



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 24/183 (13%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690
             RL+ I   +E          G     DI   R  + V      ++G+ I +    +  
Sbjct: 466 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 525

Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRKGI------SMQRY 739
           R     IE  Y+ I       L     K  +      LD + +     +      S+ RY
Sbjct: 526 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE----LNPTPKWSISRY 580

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA QLWETT+NP+ RS+L+V++ DA  AD  F  LMGD VE RR+FI++N++ +
Sbjct: 581 KGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYA 640

Query: 800 ALD 802
            LD
Sbjct: 641 NLD 643


>gi|269977746|ref|ZP_06184706.1| DNA gyrase, B subunit [Mobiluncus mulieris 28-1]
 gi|269934050|gb|EEZ90624.1| DNA gyrase, B subunit [Mobiluncus mulieris 28-1]
          Length = 671

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/604 (44%), Positives = 365/604 (60%), Gaps = 27/604 (4%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD       YDA  I +L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DE+L G
Sbjct: 1   MSDFEKPEEHYDAADITVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I VTL  DGS  V DNGRGIP   H  E     EV+MT LHAGGKF   SY VSGG
Sbjct: 60  YCDHIEVTLQADGSVKVCDNGRGIPVAEHPTEHRPTVEVVMTILHAGGKFGGSSYAVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS+ +   +KR+G  + + F NG      +  G    +TGTE  F P  
Sbjct: 120 LHGVGISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDP 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEP 218
            IF   +F+Y+TL+ R ++++FLN  ++I++ D+R                         
Sbjct: 180 AIFETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADADADSPKVGH 239

Query: 219 REITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQG-SRDNISIDLAMRWNDGYHENVLC 275
           R ++  Y+ G+  +VS+++  K  + +    I  +    D++++++A++W   Y E++  
Sbjct: 240 RHVSYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYT 299

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + N I   +GGTH  G RSALT  +  Y       K    ++ GDDCREG T+V+S+K+ 
Sbjct: 300 YANTINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLR 359

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL ++E R+ V+  V   L  W + HP EAK I+ K   A + R+AAR+A
Sbjct: 360 TPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKA 419

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RD TRRK  LD  S+PGKL DCS RD  + E+F+VEGDSAGGSA  GR   +QAILPLRG
Sbjct: 420 RDATRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRG 479

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR DK L ++EI  LITA GTGIG+D FD+ KLRY+KI++M DADVDG HI T
Sbjct: 480 KILNVEKARLDKALDNKEIQALITAFGTGIGED-FDLGKLRYYKIVLMADADVDGQHITT 538

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLT  FR M  LI  G +++  PPLY +            +  ++ L++  L     L 
Sbjct: 539 LLLTLLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLP 598

Query: 576 CDSK 579
            +  
Sbjct: 599 KEGG 602



 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  +LWETT++P  R L +V + +A+ AD+ F+ LMG++V  RR FIQ N
Sbjct: 603 IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDEAASADETFALLMGEDVASRRSFIQRN 662

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 663 AQDVRFLDI 671


>gi|331004661|ref|ZP_08328123.1| DNA gyrase subunit B [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409588|gb|EGG89028.1| DNA gyrase subunit B [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 637

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 281/585 (48%), Positives = 399/585 (68%), Gaps = 5/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ YDA  IQIL+GL+AV+ RP MYIG      GLHH++YE++DN++DE+L G+   I V
Sbjct: 2   STEYDASQIQILEGLEAVRVRPGMYIGSISS-RGLHHLVYEIVDNSVDEALAGFCTEIKV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N D S TV DNGRGIP D+ ++ G  A EV+ T LHAGGKF    YK SGGLHGVG S
Sbjct: 61  KINEDNSITVRDNGRGIPVDIQQKAGKPALEVVFTILHAGGKFGGGGYKTSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+WL +++ ++  IY M F  G +   + V G     ++GTEV+FLP + IF   
Sbjct: 121 VVNALSTWLDVKVYKDCKIYHMRFEKGKVVEDIKVIGECSPEESGTEVSFLPDAGIFEET 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +++D L+ RLRE +FL  +++I+LIDKR+ +    +  Y+GGI+ FV+YL++ K P+ +
Sbjct: 181 VYDFDILKVRLRETAFLTKALKITLIDKRAEKREM-SFHYEGGIKEFVTYLNKSKSPIYE 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G ++ + +++AM+ ND Y E++  F NNI   +GGTHLSG ++ALT+    Y  
Sbjct: 240 DVIYCEGIKEKVVVEVAMQHNDTYTESIYTFVNNINTPEGGTHLSGFKNALTKTFNEYAR 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K+++ ++ G+D REG  +++S+K+ DP+F  QTK+KL +SE ++ V + V++ L+
Sbjct: 300 NNKLLKENEENLSGEDIREGLVAIISVKIQDPQFEGQTKQKLGNSEAQTAVNAVVSEQLT 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK+I +K + A   R AAR+ARDLTRRK  LD  SLPGKLADCS ++P++ 
Sbjct: 360 YFLEQNPGVAKLISEKAITAQRARAAARKARDLTRRKSALDGMSLPGKLADCSSKNPEEC 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+F+VEGDSAGGSAK  R R+ QAILPLRGKILNVE+AR DK+ S+ EI  +ITA GTGI
Sbjct: 420 EIFIVEGDSAGGSAKSARKRDTQAILPLRGKILNVEKARLDKIYSNAEIKAMITAFGTGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FDI+KLRY+KIIIMTDADVDGAHI TL+LTF +R MP LI  G +Y+ +PPLY + 
Sbjct: 480 QKD-FDISKLRYNKIIIMTDADVDGAHIDTLMLTFIYRFMPELIKEGHVYLAQPPLYKLE 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + K + Y   +E L++ L      +          G +    L  
Sbjct: 539 KNKKVWYAYSDEELDNILKEVGRDQNNKIQRYKGLGEMDAEQLWE 583



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 5/106 (4%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760
             L  +    K+        LD I     +  +  +QRYKGLGEM+A QLWETT++P+ R
Sbjct: 532 PPLYKLEKNKKVWYAYSDEELDNILKEVGRDQNNKIQRYKGLGEMDAEQLWETTMDPERR 591

Query: 761 SLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            L +V + D+   + D  F+ LMGD+V PRREFI+ N+     LDI
Sbjct: 592 VLKKVVLDDSMLSETDITFNTLMGDQVAPRREFIEANAKYVSNLDI 637


>gi|242372598|ref|ZP_04818172.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1]
 gi|242349653|gb|EES41254.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1]
          Length = 643

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 300/639 (46%), Positives = 415/639 (64%), Gaps = 5/639 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  DQIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    DI
Sbjct: 125 GVGSSVVNALSQDLEVYVYRNETIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKADGDI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E RE +  Y+GGI+++V  L+ +K
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDEREEEVREDSYHYEGGIKSYVELLNENK 243

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +P+ Q PI I  ++D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR +
Sbjct: 244 EPIHQEPIYIHQTKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVL 303

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY  +S   K+DK  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+   
Sbjct: 304 NSYGTQSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLF 363

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++    +L E+P   +IIV+K + AS  R AA++AR++TRRK  LD++SLPGKLADCS +
Sbjct: 364 SEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSK 423

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P +SE+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +ITA
Sbjct: 424 NPDESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITA 483

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +PP
Sbjct: 484 FGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP 542

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY +T+GK   YV ++  L+      + +           G ++ + L     +      
Sbjct: 543 LYKLTQGKQKYYVFNDRELDKLKAELNPTPKWSISRYKGLGEMNADQLWETTMNPEHRSM 602

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L        D     + ++  V         + ++ + L
Sbjct: 603 LQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANL 641



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 24/183 (13%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690
             RL+ I   +E          G     DI   R  + V      ++G+ I +    +  
Sbjct: 465 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 524

Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRKGI------SMQRY 739
           R     IE  Y+ I       L     K  +      LD + +     +      S+ RY
Sbjct: 525 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE----LNPTPKWSISRY 579

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA QLWETT+NP+ RS+L+V++ DA  AD  F  LMGD VE RR+FI++N++ +
Sbjct: 580 KGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYA 639

Query: 800 ALD 802
            LD
Sbjct: 640 NLD 642


>gi|306817507|ref|ZP_07451251.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris
           ATCC 35239]
 gi|304649731|gb|EFM47012.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris
           ATCC 35239]
          Length = 671

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 268/604 (44%), Positives = 364/604 (60%), Gaps = 27/604 (4%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD       YDA  I +L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DE+L G
Sbjct: 1   MSDFEKPEEHYDAADITVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I VTL  DGS  V DNGRGIP   H  E     EV+MT LHAGGKF   SY VSGG
Sbjct: 60  YCDHIEVTLQADGSVKVCDNGRGIPVAEHPTEHRPTVEVVMTILHAGGKFGGSSYAVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS+ +   +KR+G  + + F NG      +  G    +TGTE  F P  
Sbjct: 120 LHGVGISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDP 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEP 218
            IF   +F+Y+TL+ R ++++FLN  ++I++ D+R                         
Sbjct: 180 AIFETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADADADSPKVGH 239

Query: 219 REITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQG-SRDNISIDLAMRWNDGYHENVLC 275
           R ++  Y+ G+  +V +++  K  + +    I  +    D++++++A++W   Y E++  
Sbjct: 240 RHVSYCYENGLHDYVRFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYT 299

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + N I   +GGTH  G RSALT  +  Y       K    ++ GDDCREG T+V+S+K+ 
Sbjct: 300 YANTINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLR 359

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL ++E R+ V+  V   L  W + HP EAK I+ K   A + R+AAR+A
Sbjct: 360 TPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKA 419

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RD TRRK  LD  S+PGKL DCS RD  + E+F+VEGDSAGGSA  GR   +QAILPLRG
Sbjct: 420 RDATRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRG 479

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR DK L ++EI  LITA GTGIG+D FD+ KLRY+KI++M DADVDG HI T
Sbjct: 480 KILNVEKARLDKALDNKEIQALITAFGTGIGED-FDLGKLRYYKIVLMADADVDGQHITT 538

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLT  FR M  LI  G +++  PPLY +            +  ++ L++  L     L 
Sbjct: 539 LLLTLLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLP 598

Query: 576 CDSK 579
            +  
Sbjct: 599 KEGG 602



 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  +LWETT++P  R L +V + +A+ AD+ F+ LMG++V  RR FIQ N
Sbjct: 603 IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDEAASADETFALLMGEDVASRRSFIQRN 662

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 663 AQDVRFLDI 671


>gi|229086165|ref|ZP_04218383.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-44]
 gi|228697145|gb|EEL49912.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-44]
          Length = 654

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/663 (39%), Positives = 398/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVVDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GN+YE  F N G+    L   G     +GT + F P  
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNVYEQRFENGGVPVTTLEKIGKTK-QSGTTMHFKPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++I++ D+R+    E    Y+ GIEAFV+YL+  
Sbjct: 176 SIFSTTNYNYETLCERLRESAFLLKGMKITIKDERND--LEDVFHYETGIEAFVAYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFAGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSMLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++VKK + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVKKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FSVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFSVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|329767180|ref|ZP_08258707.1| DNA gyrase subunit B [Gemella haemolysans M341]
 gi|328836847|gb|EGF86494.1| DNA gyrase subunit B [Gemella haemolysans M341]
          Length = 638

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 288/591 (48%), Positives = 395/591 (66%), Gaps = 7/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +  Q   Y+AD IQ+L+GL+AV+ RP MYIG T    GLHH+++E++DN+IDE+L GY
Sbjct: 1   MVEKKQIQEYNADQIQVLEGLEAVRVRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV +       V DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  CDTITVAIEKGNWIRVEDNGRGIPVDIQEQTGKPALEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ L+  + R+G I+ M F  G +   + V G+  + TGT + F    +
Sbjct: 120 HGVGASVVNALSTNLEASVHRDGKIHTMKFERGDVVQGITVVGNT-DRTGTTIRFKADPE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     ++YD L+ R+REL+FLN  + I L D+R  + +E T +Y+GG+  +V  L+ +
Sbjct: 179 IFQETTVYDYDILRTRIRELAFLNKGITIILKDEREGQEKEETFYYEGGLLEYVEMLNEN 238

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    I + G  D   ++++M++N GY  NVL + NNI   +GGTH SG ++ALTR 
Sbjct: 239 KDALH-EAIYVHGEMDGKEVEISMQYNTGYSSNVLSYANNINTHEGGTHESGFKTALTRI 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY +K+    KDK S+ GDD REG  +++SIK P+P+F  QTK KL +SE+ ++    
Sbjct: 298 INSYGKKNK-LIKDKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKL 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++ L  +L E+P  AKIIV+K L AS  R AA++AR+ TRRK  L+  +LPGKLADCS 
Sbjct: 357 FSEELDRFLLENPKIAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPGKLADCSS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  + ELFLVEGDSAGGSAK GR+ + QAILPL+GKILNVE+ R DK+L++ E+ +LIT
Sbjct: 417 KDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLANDEVRSLIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG+   +I+KLRYHKI+IMTDADVDG+HIRTLLLTFFFR M  LI  G++YI +P
Sbjct: 477 AIGMGIGETL-NIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDEGYVYIARP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PLYG+  GK   Y   EE L+  +   +  ++         G ++  +L +
Sbjct: 536 PLYGLKVGKKEFYCHTEEELKQNIEEHAGDKKYTVQRYKGLGEMNAEELWD 586



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 2/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   V    ++ + +  I     ++ +        +V      V    +    
Sbjct: 454 ILNVEKVRIDKVLANDEVRSLITAIGMGIGETLNIDKLRYHKIVIMTDADVDGSHIRTLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQRY 739
             F F    + I    +      +  L     +        L   I    G K  ++QRY
Sbjct: 514 LTFFFRYMRELIDEGYVYIARPPLYGLKVGKKEFYCHTEEELKQNIEEHAGDKKYTVQRY 573

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA +LW+TT++P+ R + +V I DA +AD  F  LMG++VEPRR+FI++N+L  
Sbjct: 574 KGLGEMNAEELWDTTMDPEHRLMYQVSIDDAQRADAAFDTLMGEKVEPRRKFIEDNALNV 633

Query: 800 -ALDI 803
             LDI
Sbjct: 634 INLDI 638


>gi|31791182|ref|NP_853675.1| DNA gyrase subunit B [Mycobacterium bovis AF2122/97]
 gi|121635888|ref|YP_976111.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121635915|ref|YP_976138.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988388|ref|YP_002643055.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Tokyo 172]
 gi|260184858|ref|ZP_05762332.1| DNA gyrase subunit B [Mycobacterium tuberculosis CPHL_A]
 gi|289445530|ref|ZP_06435274.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CPHL_A]
 gi|289572581|ref|ZP_06452808.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis K85]
 gi|31616767|emb|CAD92867.1| DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121491535|emb|CAL69989.1| DNA gyrase subunit B gyrB [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121491562|emb|CAL70019.1| Dna gyrase subunit B gyrB (DNA topoisomerase) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224771501|dbj|BAH24307.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418488|gb|EFD15689.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CPHL_A]
 gi|289537012|gb|EFD41590.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis K85]
          Length = 714

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 268/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA 
Sbjct: 44  KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 102

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SGGLHG
Sbjct: 103 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 161

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F
Sbjct: 162 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 219

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              +++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 220 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 279

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+
Sbjct: 280 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 339

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 340 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 399

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P ++K++V K + ++  R AA
Sbjct: 400 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVNKAVSSAQARIAA 459

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 460 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 519

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG H
Sbjct: 520 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 578

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           I TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L    
Sbjct: 579 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 638

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 639 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 686



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 629 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 687

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLDV 714


>gi|15607147|ref|NP_214519.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Rv]
 gi|148659762|ref|YP_001281285.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|215405989|ref|ZP_03418170.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|218755721|ref|ZP_03534517.1| DNA gyrase subunit B [Mycobacterium tuberculosis GM 1503]
 gi|253796920|ref|YP_003029921.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 1435]
 gi|289552255|ref|ZP_06441465.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 605]
 gi|289747775|ref|ZP_06507153.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|289760102|ref|ZP_06519480.1| subunit B gyrB [Mycobacterium tuberculosis T85]
 gi|289764120|ref|ZP_06523498.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis GM 1503]
 gi|294995613|ref|ZP_06801304.1| DNA gyrase subunit B [Mycobacterium tuberculosis 210]
 gi|298527403|ref|ZP_07014812.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis 94_M4241A]
 gi|308373866|ref|ZP_07433901.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu006]
 gi|474435|emb|CAA55486.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|1552558|emb|CAB02426.1| DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|148503914|gb|ABQ71723.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|253318423|gb|ACT23026.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 1435]
 gi|289436887|gb|EFD19380.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 605]
 gi|289688303|gb|EFD55791.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|289711626|gb|EFD75642.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis GM 1503]
 gi|289715666|gb|EFD79678.1| subunit B gyrB [Mycobacterium tuberculosis T85]
 gi|298497197|gb|EFI32491.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis 94_M4241A]
 gi|308343895|gb|EFP32746.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu006]
 gi|326905764|gb|EGE52697.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis W-148]
 gi|328456711|gb|AEB02134.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 4207]
          Length = 714

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA 
Sbjct: 44  KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 102

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SGGLHG
Sbjct: 103 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 161

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F
Sbjct: 162 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 219

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              +++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 220 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 279

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+
Sbjct: 280 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 339

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 340 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 399

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AA
Sbjct: 400 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 459

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 460 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 519

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG H
Sbjct: 520 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 578

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           I TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L    
Sbjct: 579 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 638

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 639 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 686



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 629 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 687

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLDV 714


>gi|260203142|ref|ZP_05770633.1| DNA gyrase subunit B [Mycobacterium tuberculosis K85]
          Length = 675

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/654 (41%), Positives = 380/654 (58%), Gaps = 39/654 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+         Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ 
Sbjct: 1   MAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GYA  + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SG
Sbjct: 60  GYATTVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F   
Sbjct: 119 GLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
             +F   +++++T+  RL+E++FLN  + I+L D+R                        
Sbjct: 177 PAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN G
Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P ++K++V K + ++  
Sbjct: 357 VISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVNKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DG HI TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L
Sbjct: 536 DGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGL 595

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 596 KAGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLDV 675


>gi|167969468|ref|ZP_02551745.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|215413859|ref|ZP_03422524.1| DNA gyrase subunit B [Mycobacterium tuberculosis 94_M4241A]
 gi|215448278|ref|ZP_03435030.1| DNA gyrase subunit B [Mycobacterium tuberculosis T85]
 gi|254548933|ref|ZP_05139380.1| DNA gyrase subunit B [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|297632473|ref|ZP_06950253.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN 4207]
 gi|297729442|ref|ZP_06958560.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN R506]
 gi|313656771|ref|ZP_07813651.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN V2475]
 gi|158513716|sp|A5TY73|GYRB_MYCTA RecName: Full=DNA gyrase subunit B
 gi|158517773|sp|P0C5C5|GYRB_MYCTU RecName: Full=DNA gyrase subunit B
 gi|323717344|gb|EGB26549.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CDC1551A]
          Length = 675

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 270/654 (41%), Positives = 380/654 (58%), Gaps = 39/654 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+         Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ 
Sbjct: 1   MAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GYA  + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SG
Sbjct: 60  GYATTVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F   
Sbjct: 119 GLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
             +F   +++++T+  RL+E++FLN  + I+L D+R                        
Sbjct: 177 PAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN G
Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  
Sbjct: 357 VISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DG HI TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L
Sbjct: 536 DGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGL 595

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 596 KAGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLDV 675


>gi|302864517|ref|YP_003833154.1| DNA gyrase subunit B [Micromonospora aurantiaca ATCC 27029]
 gi|315500827|ref|YP_004079714.1| DNA gyrase, b subunit [Micromonospora sp. L5]
 gi|302567376|gb|ADL43578.1| DNA gyrase, B subunit [Micromonospora aurantiaca ATCC 27029]
 gi|315407446|gb|ADU05563.1| DNA gyrase, B subunit [Micromonospora sp. L5]
          Length = 648

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/548 (48%), Positives = 364/548 (66%), Gaps = 10/548 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N  Y A+SI +L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE+L G+ D I V
Sbjct: 6   NKKYGAESITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEALAGHCDTIDV 64

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DG   V+DNGRG P DLH +      EV +T LHAGGKF+ K+Y VSGGLHGVGVS
Sbjct: 65  VLLADGGVRVTDNGRGFPVDLHPKLKKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVS 124

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + I ++G ++   + +     PL   G A + TG+ V+F P  D+F   D
Sbjct: 125 VVNALSTRMAVEIHKDGFVWRQQYHHSKP-TPLEK-GEATDRTGSAVSFWPDPDVFETVD 182

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ T+  RL+E++FL   + I L+D+R       + RE+T  Y+GGI  FV +L+  K 
Sbjct: 183 FDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKS 242

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +GGTH  G R+ALT  + 
Sbjct: 243 PIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVN 302

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y        K    + G+D REG  +++S+K+ DP+F  QTK KL ++ V+  V+   N
Sbjct: 303 RYGA-EKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRVCN 361

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  W + +P EAKII++K   A+  R AA++AR L RRK +L+  S+PGKLADC   D
Sbjct: 362 ESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTD 421

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITAL
Sbjct: 422 PRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITAL 481

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGI  D FDI KLRYHKI++M DADVDG HI+TLLLT  FR M  L+  G +Y+  PPL
Sbjct: 482 GTGI-HDDFDIEKLRYHKIVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPPL 540

Query: 542 YGITRGKS 549
           Y I   K 
Sbjct: 541 YKIKWNKK 548



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMN  +LWETT+NP TR+L +V + DA+ AD+LFS LMG++VE RR FIQ N
Sbjct: 580 IQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAATADELFSVLMGEDVEARRSFIQRN 639

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 640 AKDVRFLDI 648


>gi|307699824|ref|ZP_07636875.1| DNA gyrase, B subunit [Mobiluncus mulieris FB024-16]
 gi|307614862|gb|EFN94080.1| DNA gyrase, B subunit [Mobiluncus mulieris FB024-16]
          Length = 671

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/604 (44%), Positives = 365/604 (60%), Gaps = 27/604 (4%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MSD       YDA  I +L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DE+L G
Sbjct: 1   MSDFEKPEEHYDAADITVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D I VTL  DGS  V DNGRGIP   H  E     EV+MT LHAGGKF   SY VSGG
Sbjct: 60  YCDHIEVTLQADGSVKVCDNGRGIPVAEHPTEHRPTVEVVMTILHAGGKFGGSSYAVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS+ +   +KR+G  + + F NG      +  G    +TGTE  F P  
Sbjct: 120 LHGVGISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDP 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---------------------P 218
            IF   +F+Y+TL+ R ++++FLN  ++I++ D+R                         
Sbjct: 180 AIFETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADVDADSPKIGH 239

Query: 219 REITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQG-SRDNISIDLAMRWNDGYHENVLC 275
           R ++  Y+ G+  +VS+++  K  + +    I  +    D++++++A++W   Y E++  
Sbjct: 240 RHVSYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYT 299

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + N I   +GGTH  G RSALT  +  Y       K    ++ GDDCREG T+V+S+K+ 
Sbjct: 300 YANTINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLR 359

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL ++E R+ V+  V   L  W + HP EAK I+ K   A + R+AAR+A
Sbjct: 360 TPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKA 419

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RD TRRK  LD  S+PGKL DCS RD  + E+F+VEGDSAGGSA  GR   +QAILPLRG
Sbjct: 420 RDATRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRG 479

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR DK L ++EI  LITA GTGIG+D FD+ KLRY+KI++M DADVDG HI T
Sbjct: 480 KILNVEKARLDKALDNKEIQALITAFGTGIGED-FDLGKLRYYKIVLMADADVDGQHITT 538

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLT  FR M  LI  G +++  PPLY +            +  ++ L++  L     L 
Sbjct: 539 LLLTLLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLP 598

Query: 576 CDSK 579
            +  
Sbjct: 599 KEGG 602



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  +LWETT++P  R L +V + +A+ AD+ F+ LMG++V  RR FIQ N
Sbjct: 603 IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDEAASADETFALLMGEDVASRRSFIQRN 662

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 663 AQDVRFLDI 671


>gi|269837196|ref|YP_003319424.1| DNA gyrase, B subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269786459|gb|ACZ38602.1| DNA gyrase, B subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 638

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 291/591 (49%), Positives = 401/591 (67%), Gaps = 7/591 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++ + +  YDA SIQ+L+GL+AV++RP MYIG TD   GLHH++YE++DN++DE+L GY
Sbjct: 1   MAEALLSK-YDASSIQVLEGLEAVRRRPGMYIGTTD-IRGLHHLVYEIVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D + TV DNGRGIP D+H + G SA EVIMT LHAGGKF    YKVSGGL
Sbjct: 59  CDRIDVTIHPDSAVTVVDNGRGIPVDVHPKLGKSALEVIMTVLHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS W+ + ++++G +Y   +  G    P+   G    ++ GT+ TF P +
Sbjct: 119 HGVGASVVNALSEWVVVEVRKDGVLYRQRYERGRPVTPVEQVGEVGPDEHGTKTTFKPDA 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF   ++N+DTL  R RE+++L   +QIS  D+R+           GGI +FV +L+R 
Sbjct: 179 TIFESLNYNFDTLMQRFREIAYLTKGLQISFRDERTDREMSFYF--DGGIVSFVRHLNRR 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++ L   P  +    +   I++A+++NDG  E+   F NNI   DGGTHL+G ++ALTR 
Sbjct: 237 RQVLQPRPFSVSREVNGNLIEVALQYNDGVAESTYTFANNINTIDGGTHLTGFKAALTRT 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  ++   K+   ++ G+D REG T+++S+K+P+P+F  QTK +L ++EV   V+S 
Sbjct: 297 INDYARRAGFLKETDENLSGEDVREGLTAIVSVKLPEPQFEGQTKGRLGNAEVAGQVQSV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VND L+ +L E+P  A+ IV K + A+  R+AAR+AR+L +RKG LD  SLPGKLADC E
Sbjct: 357 VNDALATYLNENPQAARRIVDKCVTAARAREAARKARELVQRKGALDTFSLPGKLADCQE 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP ++EL++VEGDSAGGSAKQGR R  QA+LPLRGKILNVE+AR D+ML ++EI  LIT
Sbjct: 417 RDPARAELYIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDRMLQNEEIRALIT 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGT IG D FD +KLRYH+II+MTDADVDGAHIRTLLLTFFFR + SLI +G LYI +P
Sbjct: 477 ALGTSIG-DQFDPSKLRYHRIILMTDADVDGAHIRTLLLTFFFRHLESLIVDGRLYIAQP 535

Query: 540 PLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIELFCDSKGVISKNDLRN 589
           PLY +  GK + YV  +   ++ +           +     G ++   L  
Sbjct: 536 PLYRLQSGKEIHYVYSDAQRDEIIAAGGPNKTWEIVRYKGLGEMNPEQLWE 586



 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +    ++   +  +       +  S      ++      V    +    
Sbjct: 454 ILNVEKARLDRMLQNEEIRALITALGTSIGDQFDPSKLRYHRIILMTDADVDGAHIRTLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG--RKGISMQR 738
             F F      I   R+      +  L    +   +       D I + G   K   + R
Sbjct: 514 LTFFFRHLESLIVDGRLYIAQPPLYRLQSGKEIHYVYSDAQR-DEIIAAGGPNKTWEIVR 572

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++P+ R+LL+V + DA +AD+ F  LMG  V PRR FIQ ++  
Sbjct: 573 YKGLGEMNPEQLWETTMDPENRTLLQVTLEDAVRADETFDMLMGSAVPPRRRFIQMHARE 632

Query: 799 S-ALDI 803
              LD+
Sbjct: 633 VQNLDV 638


>gi|291519486|emb|CBK74707.1| DNA topoisomerase IV subunit B [Butyrivibrio fibrisolvens 16/4]
          Length = 641

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 245/598 (40%), Positives = 345/598 (57%), Gaps = 17/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  +   +YD  SI +L+GL+AV+KRP MYIG T    GL+H+IYE++DN++DE L G 
Sbjct: 1   MAKKV---TYDESSIAVLEGLEAVRKRPGMYIGSTSR-KGLNHLIYEIVDNSVDEHLAGE 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VTL  DGSCTV DNGRGIP  +H + G+ AA ++ + LHAGGKF+   YK SGGL
Sbjct: 57  CDTIYVTLEKDGSCTVEDNGRGIPVGMHAK-GVPAARLVFSTLHAGGKFDDSVYKTSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTF 175
           HGVG SVVNALS ++ + I R+G ++   +  G+         L       N  GT++ F
Sbjct: 116 HGVGSSVVNALSEYMVVDISRDGFVHHDRYERGVPTEKLVDGLLPKISKT-NKHGTKINF 174

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LP ++IF    F  D ++ RL E ++LN  + I+  D R   P  IT     GI+ FV  
Sbjct: 175 LPDAEIFEKTYFKEDEVKSRLHETAYLNPGLTINYADLRGETPEYITYHEPEGIKGFVKE 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +++  + L    +   G  D++ +++A ++ + + EN+L F NNI   +GGTH++G ++ 
Sbjct: 235 INKTAETLH-DVVYFSGKCDDVELEVAFQYCNEFKENILGFCNNIYNSEGGTHITGFKTV 293

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  I +Y  +    K    +  G D R G T+++SIK PDPRF  QTK KL + +    
Sbjct: 294 LTTVINNYARELGILKDKDANFTGADVRNGITAIVSIKHPDPRFEGQTKTKLDNPDASKA 353

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
            +    D    + + +    K I+     ++ +R +  +A+     K         GKLA
Sbjct: 354 TQKVCQDEFVLFFDRNLETLKAIISCAEKSAKIRKSEEKAKTNLLTKQKFSFD-QNGKLA 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           +C  RD +K E+F+VEGDSAGGSAK+ R+R  QAI+P+RGKILNVE+A  DK+L++ EI 
Sbjct: 413 NCESRDAEKCEIFIVEGDSAGGSAKKARNRMYQAIMPIRGKILNVEKASMDKVLANAEIK 472

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           TLI A G G  +   + FDI KLRY KI+IM DADVDGAHI TLLLTFF+R MP LI  G
Sbjct: 473 TLINAFGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTFFYRFMPELIREG 532

Query: 533 FLYIIKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +YI  PPLY  I      +Y+ D+ +LE Y                 G +    L  
Sbjct: 533 HVYIAMPPLYKAIPTKGEEEYLYDDVALERYRKKMEGKTFTLQRYKGLGEMDAEQLWE 590



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 11/255 (4%)

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           E++  + L  Q  S +      +           FI +        K       +  +  
Sbjct: 391 EKAKTNLLTKQKFSFDQNGKLANCESRDAEKCEIFIVEGDSAGGSAKKARNRMYQAIM-- 448

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQF 675
            +   + N E      V   +++   +N       + +    + + +   +I   +    
Sbjct: 449 PIRGKILNVEKASMDKVLANAEIKTLINAFGCGFSEGYGNDFDITKLRYDKIV--IMADA 506

Query: 676 VLEGSSIFSFGSKY-KRIFSNRIEENYLTIL------SLICNGDKIKITGPCSLLDTIFS 728
            ++G+ I +    +  R     I E ++ I       ++   G++  +    +L      
Sbjct: 507 DVDGAHISTLLLTFFYRFMPELIREGHVYIAMPPLYKAIPTKGEEEYLYDDVALERYRKK 566

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788
           +  K  ++QRYKGLGEM+A QLWETTL+P+ R L  V+I D   A ++   LMG +V PR
Sbjct: 567 MEGKTFTLQRYKGLGEMDAEQLWETTLDPERRKLKLVEIEDGLMASEVTELLMGSDVAPR 626

Query: 789 REFIQENSLPSALDI 803
           ++FI +++  + LD+
Sbjct: 627 KQFIYKHAKEAELDV 641


>gi|462227|sp|P34031|GYRB_SPICI RecName: Full=DNA gyrase subunit B
 gi|49348|emb|CAA79523.1| DNA gyrase subunit B [Spiroplasma citri]
 gi|745458|prf||2016285C DNA gyrase:SUBUNIT=B
          Length = 640

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 266/589 (45%), Positives = 389/589 (66%), Gaps = 10/589 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+++SIQIL+GL+A++KRP MYIG T+   GLHH+++E++DN+IDE L  +A+ I + 
Sbjct: 3   DNYNSESIQILEGLEAIRKRPGMYIGATNA-RGLHHLVWEIVDNSIDEVLANFANKIKII 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN D S TV DNGRGIP ++H +  +S  E + T LHAGGKF+  +YK+SGGLHGVG SV
Sbjct: 62  LNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VNALS +LK+ +++    Y M F N G +  P+   GS   +TGT VTFLP   IF    
Sbjct: 122 VNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTS-ETGTTVTFLPDEKIFKETT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            F++ T+Q+R+++L FLN  ++ISL+D +   E + +   +  GI+ +V  L++     +
Sbjct: 181 IFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTIGTPL 240

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                ++G  DNI ++  +++ND Y EN+  F NNI   +GGTH  G R A+ R+I +Y 
Sbjct: 241 NDVFYVEGIEDNIVVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVREINNYF 300

Query: 305 EK--SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           +   +  +K ++     DD +EG T ++SI+ P+P++  QT +KL++SEV+ +V + V  
Sbjct: 301 KNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVSNIVGK 360

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           GLS++L E+P +AK I++K+  +      A+RA+++TRRK V+D  SLPGKL+DC  +D 
Sbjct: 361 GLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSDCETKDA 420

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           K +EL++VEGDSAGGSAK GR+R+ QAILPLRGKILNVE+A+  K+  + EI ++ITALG
Sbjct: 421 KIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIITALG 480

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI +D+F+  KLRY K+IIMTDADVDGAHIR LLLTFF+R M  LI NG +YI +PPLY
Sbjct: 481 AGI-KDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLY 539

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
            +     ++YV  +  LE Y        +          G ++   L  
Sbjct: 540 KVENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWE 588



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K  ++QRYKGLGEMN  QLWETT++P+ R LL+V + +A +A+ + + LMG+ VEPR++F
Sbjct: 568 KNYTIQRYKGLGEMNPEQLWETTMDPERRLLLKVSVNNAFEANLICNELMGENVEPRKKF 627

Query: 792 IQENSLPS-ALDI 803
           I+EN+     LD+
Sbjct: 628 IRENAKYVKNLDV 640


>gi|254366465|ref|ZP_04982509.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis str. Haarlem]
 gi|134151977|gb|EBA44022.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis str. Haarlem]
          Length = 697

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA 
Sbjct: 27  KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 85

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SGGLHG
Sbjct: 86  TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 144

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F
Sbjct: 145 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 202

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              +++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 203 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 262

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+
Sbjct: 263 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 322

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 323 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 382

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AA
Sbjct: 383 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 442

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 443 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 502

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG H
Sbjct: 503 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 561

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           I TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L    
Sbjct: 562 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 621

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 622 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 669



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 612 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 670

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 671 SILMGEDVDARRSFITRNAKDVRFLDV 697


>gi|308376284|ref|ZP_07438242.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu008]
 gi|308351597|gb|EFP40448.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu008]
          Length = 696

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA 
Sbjct: 26  KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 84

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SGGLHG
Sbjct: 85  TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 143

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F
Sbjct: 144 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 201

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              +++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 202 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 261

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+
Sbjct: 262 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 321

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 322 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 381

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AA
Sbjct: 382 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 441

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 442 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 501

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG H
Sbjct: 502 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 560

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           I TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L    
Sbjct: 561 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 620

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 621 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 668



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 611 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 669

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 670 SILMGEDVDARRSFITRNAKDVRFLDV 696


>gi|238061919|ref|ZP_04606628.1| DNA gyrase B subunit gyrB [Micromonospora sp. ATCC 39149]
 gi|237883730|gb|EEP72558.1| DNA gyrase B subunit gyrB [Micromonospora sp. ATCC 39149]
          Length = 648

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/548 (48%), Positives = 366/548 (66%), Gaps = 10/548 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A+SI +L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE+L G+ D I V
Sbjct: 6   KQEYGAESITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEALAGHCDTIDV 64

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DG   V+DNGRG P DLH +      EV +T LHAGGKF+ K+Y VSGGLHGVGVS
Sbjct: 65  VLLADGGVRVTDNGRGFPVDLHPKLKKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVS 124

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + I + G ++   + N    +PL   G A + TG+ VTF P +D+F   +
Sbjct: 125 VVNALSTRMAVEIHKSGFVWRQQYANSKP-SPLEK-GEATDRTGSAVTFWPDADVFETVN 182

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ T+  RL+E++FLN  + I L+D+R       +PRE+T  YKGGI  FV +L+  K 
Sbjct: 183 FDFQTIYRRLQEMAFLNRGLTIHLLDERVSEGEEGKPREVTFCYKGGIADFVRHLNASKN 242

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  + 
Sbjct: 243 PIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVN 302

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N
Sbjct: 303 RYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCN 361

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  W + +P EAKII+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   D
Sbjct: 362 EWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTD 421

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITAL
Sbjct: 422 PRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITAL 481

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGI  D FD+ KLRYHK+++M DADVDG HI+TLLLT  FR M  L+  G +Y+  PPL
Sbjct: 482 GTGI-HDDFDMEKLRYHKVVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPPL 540

Query: 542 YGITRGKS 549
           Y I   K 
Sbjct: 541 YKIKWNKK 548



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMN  +LWETT+NP TR+L +V + DA+ AD+LFS LMG++VE RR FIQ N
Sbjct: 580 IQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAAVADELFSVLMGEDVEARRSFIQRN 639

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 640 AKDVRFLDI 648


>gi|240172095|ref|ZP_04750754.1| DNA gyrase subunit B [Mycobacterium kansasii ATCC 12478]
          Length = 675

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/654 (41%), Positives = 385/654 (58%), Gaps = 39/654 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+         Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ 
Sbjct: 1   MAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GYA  ++V L  DG   V+D+GRGIP  +H   GI   +V+MT+LHAGGKF+  +Y +SG
Sbjct: 60  GYAATVSVVLLEDGGVEVADDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDAYAISG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L++ IKR+G+ +   +        L   G+    TGT V F   
Sbjct: 119 GLHGVGVSVVNALSTRLEVEIKRDGHEWSQVYEKSEPMG-LKQ-GAPTKKTGTTVRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
            ++F   +++++T+  RL+E++FLN  + I+L D+R                        
Sbjct: 177 PNVFETTEYDFETVARRLQEMAFLNKGLTINLTDQRVTQDEVVDEVVSDVAEAPKSASEK 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + ++ T  Y GG+  FV +++R K  +  S +   G      +++AM+WN G
Sbjct: 237 AAESAAPHKVKKRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGPGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G RSALT  +  Y +     K+   ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKEKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK +V K + ++  
Sbjct: 357 VISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKTVVNKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI +LRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIARLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DG HI TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L
Sbjct: 536 DGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGL 595

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 596 KAGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLDV 675


>gi|288556234|ref|YP_003428169.1| DNA topoisomerase IV subunit B [Bacillus pseudofirmus OF4]
 gi|288547394|gb|ADC51277.1| DNA topoisomerase IV subunit B [Bacillus pseudofirmus OF4]
          Length = 656

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 265/669 (39%), Positives = 389/669 (58%), Gaps = 22/669 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q+  Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+
Sbjct: 1   MAKK-QHLDYNDDAIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V+D GRG+P  +H + G    E+I+T LHAGGKF Q  Y  SGGL
Sbjct: 59  GSYIKVTIHRDNSISVTDEGRGMPVGMH-KLGKPTPEIILTVLHAGGKFGQGGYATSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+G +Y+  F N G     L   G     +GT + F P  
Sbjct: 118 HGVGASVVNALSEWLVVEIKRDGTVYKQRFENGGKAVTTLEKQG-TTRKSGTTIHFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFSV  +N++TL  RLRE +FL   ++I L D RS +       Y  GIEAFV YL+  
Sbjct: 177 SIFSVTTYNFETLSERLREAAFLLKGLKIELCDMRS-DQENEIFHYDNGIEAFVEYLNED 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L    +   G    I ++LA ++NDGY E+VL F NN+  KDGGTH  G ++A+TR 
Sbjct: 236 KETLHP-VVSFSGEHQEIEVELAFQFNDGYTESVLSFVNNVRTKDGGTHELGAKAAMTRA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           +  Y  K    K+ ++++ G D REGFT+++S+++P+   +F  QTK KL + E RS V+
Sbjct: 295 VNEYARKVKLLKEKEKNLDGSDIREGFTAIVSVRVPEAKLQFEGQTKSKLGTPEARSAVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
             V++ LS + EE+P  + +++KK + A+  R+AAR+AR+     +K       L GKL 
Sbjct: 355 GLVSEKLSYFFEENPDISTMLIKKAVKAAQAREAARKAREDARNGKKSKRKDVLLSGKLT 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++PK++EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ + ++ ++EI 
Sbjct: 415 PAQSKNPKRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLEDIMKNEEIR 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G D FD+  + Y KI+IMTDAD DGAHI+ LLLTFF+R M  L+  G +Y
Sbjct: 475 TIIHTIGAGVGAD-FDLEDVNYDKIVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVY 533

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y  DE  L+  +        +       G ++   L    
Sbjct: 534 IALPPLYKVSRGTGKKEVIEYAWDERELDTAIKKVGRGY-MLQRYKGLGEMNATQLWET- 591

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                +D   +                      +  +     + + +A  L       E 
Sbjct: 592 ----TMDPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIETHVAFGLEEETNILEN 647

Query: 652 SWHGSINNS 660
                +   
Sbjct: 648 ENLAVVEEE 656



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 5/257 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +    +    +   +     +S  +++ L        SKN  RN +           
Sbjct: 378 KAVKAAQAREAARKAREDARNGKKSKRKDVLLSGKLTPAQSKNPKRNELYLVEGDSAGGS 437

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  K      +   V N E  +  ++    ++   ++ I       +     N D 
Sbjct: 438 AKQGRDRKFQAVLPLRGKVINTEKAKLEDIMKNEEIRTIIHTIGAGVGADFDLEDVNYDK 497

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TG 718
           +V           +      F +      + + ++      +  +     K ++      
Sbjct: 498 IVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYIALPPLYKVSRGTGKKEVIEYAWD 557

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              L   I  +GR G  +QRYKGLGEMNA+QLWETT++P+TR+L+RVKI DA++A+   +
Sbjct: 558 ERELDTAIKKVGR-GYMLQRYKGLGEMNATQLWETTMDPETRTLIRVKIDDAARAERRVT 616

Query: 779 RLMGDEVEPRREFIQEN 795
            LMGD+VEPRR++I+ +
Sbjct: 617 TLMGDKVEPRRKWIETH 633


>gi|215432910|ref|ZP_03430829.1| DNA gyrase subunit B [Mycobacterium tuberculosis EAS054]
 gi|260198989|ref|ZP_05766480.1| DNA gyrase subunit B [Mycobacterium tuberculosis T46]
 gi|289441372|ref|ZP_06431116.1| DNA gyrase, B subunit [Mycobacterium tuberculosis T46]
 gi|289748467|ref|ZP_06507845.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis T92]
 gi|289756064|ref|ZP_06515442.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289414291|gb|EFD11531.1| DNA gyrase, B subunit [Mycobacterium tuberculosis T46]
 gi|289689054|gb|EFD56483.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis T92]
 gi|289696651|gb|EFD64080.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
          Length = 714

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 268/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA 
Sbjct: 44  KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 102

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SGGLHG
Sbjct: 103 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 161

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F
Sbjct: 162 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 219

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              +++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 220 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 279

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +  T  Y GG+  FV +++R K  +  S +   G      +++A++WN GY E+
Sbjct: 280 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAIQWNAGYSES 339

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 340 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 399

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AA
Sbjct: 400 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 459

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 460 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 519

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG H
Sbjct: 520 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 578

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           I TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L    
Sbjct: 579 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 638

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 639 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 686



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 629 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 687

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLDV 714


>gi|284010225|dbj|BAI66712.1| DNA gyrase B [Borrelia turcica]
          Length = 625

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 271/554 (48%), Positives = 397/554 (71%), Gaps = 3/554 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           +LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I + +N D S TV
Sbjct: 1   VLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEIVINSDNSITV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
           SDNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVVNALSS+L+
Sbjct: 60  SDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + ++R+G ++  +F  GI  + + V G +    GT+VTFL   +IF   +++++TL  RL
Sbjct: 120 VFVRRDGKVFRQTFSRGIPTSEVEVVGES-CSRGTKVTFLADYEIFETLNYSFETLSKRL 178

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           +EL+FLN  ++IS+ D+R  E +    +++GGI+AFV YL  + + +   P  I+GS D 
Sbjct: 179 KELAFLNDKIRISIEDRRLGEEKFKEFYFEGGIKAFVDYLTNNSRNIQSEPYFIEGSFDE 238

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           + +D+ ++W +GY EN+L F NNI  ++GGTH++G RS L + +    + +  SKKD   
Sbjct: 239 VIVDVGLKWTEGYSENILSFVNNINTREGGTHVAGFRSGLFKAMNEAFKMTKISKKDVPI 298

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           +  DD +EG T+V+SIK+P+P+F  QTK KL +S V+ +VE+ V+DGL + + ++PLE +
Sbjct: 299 LTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYVKKIVETVVHDGLLSIINDNPLEIE 358

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           +I  K + A+  R+AAR+AR+  R+K   +  +LPGKLADCS ++P + E+++VEGDSAG
Sbjct: 359 VIFDKAIRAARAREAARKARESERKKSTFESLALPGKLADCSSKNPVEREIYIVEGDSAG 418

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+  F I +LR
Sbjct: 419 GSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT-FCIERLR 477

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556
           YHK+IIM DADVDG+HIRTLLLTFFFR M +L+ N  +YI  PPLY I     + Y  D+
Sbjct: 478 YHKVIIMADADVDGSHIRTLLLTFFFRYMRTLVENKHVYIAMPPLYKIKSENRVHYFYDD 537

Query: 557 ESLEDYLINQSLSE 570
              E +L +    +
Sbjct: 538 LEKESFLGSIESDK 551



 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 69/130 (53%), Gaps = 8/130 (6%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT------IFSIGRKGI 734
            + +F  +Y R                    +   +      L+       I S  R  I
Sbjct: 497 LLLTFFFRYMRTLVENKHVYIAMPPLYKIKSENR-VHYFYDDLEKESFLGSIESDKRDKI 555

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMN +QLWETT+NP TR +  + I DA QAD +F  LMGD+VEPRREFI++
Sbjct: 556 NLQRYKGLGEMNPTQLWETTMNPATRKMKLIGIDDAMQADRIFVTLMGDDVEPRREFIEQ 615

Query: 795 NSLP-SALDI 803
           N+L    LD+
Sbjct: 616 NALDVVNLDV 625


>gi|215425191|ref|ZP_03423110.1| DNA gyrase subunit B [Mycobacterium tuberculosis T92]
          Length = 675

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 269/654 (41%), Positives = 380/654 (58%), Gaps = 39/654 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+         Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ 
Sbjct: 1   MAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GYA  + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SG
Sbjct: 60  GYATTVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F   
Sbjct: 119 GLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
             +F   +++++T+  RL+E++FLN  + I+L D+R                        
Sbjct: 177 PAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +  T  Y GG+  FV +++R K  +  S +   G      +++A++WN G
Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAIQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  
Sbjct: 357 VISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DG HI TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L
Sbjct: 536 DGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGL 595

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 596 KAGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLDV 675


>gi|38232647|ref|NP_938414.1| DNA gyrase subunit B [Corynebacterium diphtheriae NCTC 13129]
 gi|38198905|emb|CAE48516.1| DNA gyrase subunit B [Corynebacterium diphtheriae]
          Length = 685

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 280/682 (41%), Positives = 393/682 (57%), Gaps = 46/682 (6%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
                Y A SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GYA  +
Sbjct: 7   TAEHEYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGYATHV 65

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DG   V DNGRGIP ++H   G    +V+MT+LHAGGKF+  SY VSGGLHGVG
Sbjct: 66  DVTLLADGGVEVVDNGRGIPVEMHPS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 124

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS+ ++  IKR+G  +  +F   I D PL V G     TGT + F P ++IF  
Sbjct: 125 ISVVNALSTRVEADIKRDGKHWLQNFSMAIPD-PL-VEGGNARGTGTTIRFWPDAEIFET 182

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE------------------------ 220
             F ++T+  RL+E++FLN  + I+L+DKR  +                           
Sbjct: 183 TTFKFETISRRLQEMAFLNKGLTITLVDKRVTDEELELEAIAEEGDTAENVSLDQIDVDA 242

Query: 221 ----------------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
                              FY  G++ +V++L++ K+ +  + I      ++  +++AM+
Sbjct: 243 DGNIDAPAAPKKREKKKVFFYPDGLKDYVAHLNKSKQVIHPTIISFDAKGNDHEVEVAMQ 302

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WN+ Y ++V  F N I   +GGTH  G R+ALT  +  Y  +    K+ + ++ GDDCRE
Sbjct: 303 WNNSYSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAREHKLLKEKEANLTGDDCRE 362

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G ++V+S+++ DP+F  QTK KL ++EV+  V+  VN+ ++ WL+ +P EAK I+ K + 
Sbjct: 363 GLSAVISVRVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHIADWLDANPAEAKTIINKAVS 422

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP+KSEL++VEGDSAGGSAK GR 
Sbjct: 423 SAHARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKAGRD 482

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
              QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDI KLRYHKI++M 
Sbjct: 483 SLYQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDIKKLRYHKIVLMA 541

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYL 563
           DADVDG+HI TLLLT  FR MP LI  G +Y+ +PPLY +  GK    +   +   +  L
Sbjct: 542 DADVDGSHIATLLLTLLFRFMPQLIEEGHVYLAQPPLYKLKWGKGEPGFAYSDAERDTLL 601

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
                        D           N  +                D T  ++A       
Sbjct: 602 AEGLAQNRKINKDDGIQRYKGLGEMNASELWETTLDPKYRVLRRVDITDAQRADEIFSIL 661

Query: 624 CESDQEINVSLASKLANRLNFI 645
              D     S  ++ A  + F+
Sbjct: 662 MGDDVSARRSFITRRAKDVRFL 683



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 8/88 (9%)

Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           DT+ + G    + I+    +QRYKGLGEMNAS+LWETTL+P  R L RV ITDA +AD++
Sbjct: 598 DTLLAEGLAQNRKINKDDGIQRYKGLGEMNASELWETTLDPKYRVLRRVDITDAQRADEI 657

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI   +     LDI
Sbjct: 658 FSILMGDDVSARRSFITRRAKDVRFLDI 685


>gi|227487658|ref|ZP_03917974.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092352|gb|EEI27664.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 691

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 290/665 (43%), Positives = 390/665 (58%), Gaps = 54/665 (8%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+++ QN       YDA SI +L+GL+AV+KRP MYIG T G  GLHH+++EV+DN+IDE
Sbjct: 1   MAESQQNLSPEHHDYDATSITVLEGLEAVRKRPGMYIGST-GRRGLHHLVWEVVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD + V L+ DGS  V+DNGRGIP ++H + G    EV+MT+LHAGGKFN  SYK
Sbjct: 60  ALAGFADKVDVVLHEDGSVEVTDNGRGIPVEMH-QTGRPTVEVVMTQLHAGGKFNNDSYK 118

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG+SVVNALS+ ++  IKR+G  +   F N + D  L   G A   TGT + F
Sbjct: 119 VSGGLHGVGISVVNALSTRVEADIKRDGYHWYQRFNNQVPD-DLEKGGKA-RGTGTRIRF 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------- 214
            P ++IF   +FNY T+  RL++++FLN  V I L DKR                     
Sbjct: 177 WPDAEIFETVEFNYKTISDRLQQMAFLNKGVYIKLTDKRKHIIAEEEKPSLEADESLLEA 236

Query: 215 ----------------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
                                 +P  R +   Y  G+  +V +L++ K  L  + +  Q 
Sbjct: 237 DSLSLDEVDEKLAEKPQAEEPETPSERSVVFHYPDGLIDYVKFLNKKKTALHPTIVGFQD 296

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
           S D++++++A++WN  Y ENV  F N I   +GGTH  G R+ALT  +  Y       K 
Sbjct: 297 SEDDLALEVALQWNTSYKENVFTFANTIATVEGGTHEEGFRAALTTIMNKYARDHKLLKD 356

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               + GDDCREG ++V+S+K+ DP+F  QTK KL ++ V+S V+  VN  L+ W E +P
Sbjct: 357 KDPKLTGDDCREGLSAVVSVKVGDPQFEGQTKTKLGNTNVKSFVQRVVNTHLTHWFEANP 416

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAKIIV+K   ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP+KSEL++VEG
Sbjct: 417 AEAKIIVQKASSSAQARLAARKARELVRRKSPTDMGGLPGKLADCRSKDPEKSELYIVEG 476

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSAGGSAK GR    QAILPLRGKILNVE+AR D+   + EI  +ITALGTG+  D FDI
Sbjct: 477 DSAGGSAKAGRDSMFQAILPLRGKILNVEKARLDRAFKNAEIQAIITALGTGV-HDEFDI 535

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQ 551
           +KLRYHKI++M DADVDG HI TLLLT  FR MP+LI  G +Y+  PPLY +   K    
Sbjct: 536 SKLRYHKIVLMADADVDGQHIATLLLTLLFRFMPALIEEGHVYLANPPLYKLKWQKGDPG 595

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           +   ++  +D L     +       D           N  +                D  
Sbjct: 596 FAYSDQERDDLLAEGLEAGRKINTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRVDLE 655

Query: 612 FIEQA 616
             E+A
Sbjct: 656 DAERA 660



 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/88 (55%), Positives = 60/88 (68%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
            LL      GRK I+    +QRYKGLGEMNAS+LWETTL+PD R+L RV + DA +AD+L
Sbjct: 605 DLLAEGLEAGRK-INTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRVDLEDAERADEL 663

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI  N+     LD+
Sbjct: 664 FSILMGDDVVARRTFITRNAKDVRFLDV 691


>gi|228474176|ref|ZP_04058913.1| DNA gyrase, B subunit [Staphylococcus hominis SK119]
 gi|228271871|gb|EEK13208.1| DNA gyrase, B subunit [Staphylococcus hominis SK119]
          Length = 640

 Score =  568 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 293/592 (49%), Positives = 404/592 (68%), Gaps = 6/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A+ I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  ANQIEVVIENDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++ + R   IY  ++  G+    L   GS  + TGT + F   S+
Sbjct: 120 HGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKADSE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238
           IFS    +NY+TLQ R+REL+FLN  + I+L D+R  + +      Y+GGI+++V  L+ 
Sbjct: 179 IFSETTVYNYETLQKRIRELAFLNKGISITLRDEREDKEQREDTYHYEGGIKSYVELLNE 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR
Sbjct: 239 NKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY  +S   K DK  + G+D REG T+V+S+K  +P+F  QTK KL +SEVR +V+ 
Sbjct: 299 VLNSYGTQSKIIKDDKERLSGEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSEVRQIVDR 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P  A+IIV+K + AS  R AA++AR++TRRK  L+I+SLPGKLADCS
Sbjct: 359 LFSEHFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++P +SE+FLVEGDSAGGS K+GR  + QAILPLRGKILNVE+AR D++L++ EI  +I
Sbjct: 419 SKNPDESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PPLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 538 PPLYKLTQGKQKYYVFNDRELDKLKAELNPTPKWQISRYKGLGEMNADQLWE 589



 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 24/183 (13%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690
             RL+ I   +E          G     DI   R  + V      ++G+ I +    +  
Sbjct: 462 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 521

Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRY 739
           R     IE  Y+ I       L     K  +      LD + +     ++      + RY
Sbjct: 522 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE----LNPTPKWQISRY 576

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA QLWETT+NP+ R +L+VK+ DA +AD  F  LMGD VE RR+FI++N++ +
Sbjct: 577 KGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEMLMGDVVENRRQFIEDNAVYA 636

Query: 800 ALD 802
            LD
Sbjct: 637 NLD 639


>gi|299117008|emb|CBN73779.1| DNA topoisomerase IV subunit B [Ectocarpus siliculosus]
          Length = 688

 Score =  568 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/595 (45%), Positives = 368/595 (61%), Gaps = 15/595 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y AD I +L+GL+ V+KRP MYIG T G  GLHH+++EV+DNAIDE+L GY D + VTL
Sbjct: 41  DYGADQITVLEGLEPVRKRPGMYIGST-GPKGLHHLVFEVVDNAIDEALAGYCDTVYVTL 99

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVGVS 126
             DGSCTV DNGRGIP D+H     SA E ++T LHAGGKF      YKVSGGLHGVGVS
Sbjct: 100 EEDGSCTVRDNGRGIPCDIHPRTKKSALETVLTVLHAGGKFGGDESGYKVSGGLHGVGVS 159

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS W ++ + R G  + +SF  G     L    + A    GT V FLP  +IF   
Sbjct: 160 VVNALSQWAEVEVVRGGKRHSLSFERGKTQGDLFTADAGAEEAGGTAVRFLPDPEIFKTT 219

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISL------IDKRSPEPREITMFYKGGIEAFVSYLDR 238
             F ++ L  R+ EL++LN+ V I +      +D+     +  T  +KGG++ FV  + +
Sbjct: 220 TEFEFERLSGRMDELAYLNAGVSIVMADARSGVDEDGNFKKTETYLHKGGVQEFVELMCK 279

Query: 239 HKKPLMQSPIRIQ--GSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
            K+ L      I+  G RD + ++  + W+ D Y ++++ F N I   DGGTHL GL+S 
Sbjct: 280 EKQHLHPDMKVIRALGERDGVQVEACLSWSSDMYTDSLVSFANGIRTGDGGTHLEGLKSI 339

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + S   KS   K  + ++ GD  REG T+V+S+K+P+P F  QTK +L + EVR +
Sbjct: 340 VTRTVNSMGRKSGKLKDSQSNLGGDFVREGLTAVVSVKVPEPEFEGQTKNRLGNPEVRGI 399

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+S V + L    E HP     I+ K   A     AA+ ARD+ RRK +L    LPGKLA
Sbjct: 400 VDSIVGEELVKLFEWHPKILGAILDKASSAQAAAAAAKAARDMVRRKSLLTSTVLPGKLA 459

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+ RDP +SE+++VEGDSA GSAKQGR R  QAILPLRGKILN+E+   +++  + E+ 
Sbjct: 460 DCASRDPVESEIYIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIEKCASERIYQNNELQ 519

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI+ALG GI  + FD + LRYH+I++MTDADVDG+HIR LLLTFFFR   SLI NGF++
Sbjct: 520 ALISALGLGIKGNEFDASSLRYHRIVVMTDADVDGSHIRILLLTFFFRYQRSLIENGFVF 579

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           I  PPLY I +GK+ +YV  +E  +  +     S  +        G +    L +
Sbjct: 580 IACPPLYKIKQGKTEKYVYTQEECDSAVSELPASPAVQLQRFKGLGEMMPQQLWD 634



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 15/157 (9%)

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIF----SFGSKYKRIFSNRIEENYL----TILSL 707
             + S +   RI   V     ++GS I     +F  +Y+R     IE  ++      L  
Sbjct: 533 EFDASSLRYHRIV--VMTDADVDGSHIRILLLTFFFRYQRSL---IENGFVFIACPPLYK 587

Query: 708 ICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           I  G   K        D+  S       + +QR+KGLGEM   QLW+TT++P  R+L  V
Sbjct: 588 IKQGKTEKYVYTQEECDSAVSELPASPAVQLQRFKGLGEMMPQQLWDTTMDPARRTLKLV 647

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            + DA+ AD +FS LMGD V PR+EFI E++    LD
Sbjct: 648 TVEDAAAADRIFSVLMGDNVGPRKEFINEHANNLKLD 684


>gi|15839377|ref|NP_334414.1| DNA gyrase subunit B [Mycobacterium tuberculosis CDC1551]
 gi|308232616|ref|ZP_07416630.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu001]
 gi|308369281|ref|ZP_07417160.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu002]
 gi|308370291|ref|ZP_07420933.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu003]
 gi|308371557|ref|ZP_07425301.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu004]
 gi|308375038|ref|ZP_07442451.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu007]
 gi|308379671|ref|ZP_07487073.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu010]
 gi|308380869|ref|ZP_07491290.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu011]
 gi|308406291|ref|ZP_07495844.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu012]
 gi|13879046|gb|AAK44228.1| DNA gyrase subunit B [Mycobacterium tuberculosis CDC1551]
 gi|308213443|gb|EFO72842.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu001]
 gi|308328160|gb|EFP17011.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu002]
 gi|308332534|gb|EFP21385.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu003]
 gi|308336277|gb|EFP25128.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu004]
 gi|308347679|gb|EFP36530.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu007]
 gi|308356307|gb|EFP45158.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu010]
 gi|308360194|gb|EFP49045.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu011]
 gi|308363881|gb|EFP52732.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu012]
          Length = 686

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA 
Sbjct: 16  KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 74

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SGGLHG
Sbjct: 75  TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 133

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F
Sbjct: 134 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              +++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 192 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 251

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+
Sbjct: 252 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 311

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 312 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 371

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AA
Sbjct: 372 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 431

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 432 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 491

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG H
Sbjct: 492 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 550

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           I TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L    
Sbjct: 551 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 610

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 611 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 658



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 601 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 659

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 660 SILMGEDVDARRSFITRNAKDVRFLDV 686


>gi|284010229|dbj|BAI66714.1| DNA gyrase B [Borrelia sp. Tortoise14H1]
          Length = 625

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 269/576 (46%), Positives = 400/576 (69%), Gaps = 6/576 (1%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           +LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L G+ D I V +N D S TV
Sbjct: 1   VLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVINSDNSITV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
           SDNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVVNALSS+L+
Sbjct: 60  SDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + ++R+G ++  +F  G+  + + V G +    GT+VTFL   ++F   +++++ L  RL
Sbjct: 120 VFVRRDGKVFRQTFSRGVPTSEVEVVGES-FSRGTKVTFLADYEVFETLNYSFEILSKRL 178

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           +EL+FLN  ++IS+ D+R  E +    +++GGI+AFV YL  + + +   P  I+GS D 
Sbjct: 179 KELAFLNDKIRISIEDRRIGEEKFKEFYFEGGIKAFVDYLTNNSRNIQSEPYFIEGSFDE 238

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           + +D+ ++W +GY EN+L F NNI  ++GGTH++G RS L + +    + +  SKKD  +
Sbjct: 239 VIVDVGLKWTEGYSENILSFVNNINTREGGTHVAGFRSGLFKAMNEAFKGTKISKKDVPT 298

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           +  DD +EG T+V+SIK+P+P+F  QTK KL +S V+ +VE+ V+DGL   + ++ LE +
Sbjct: 299 LTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLRIINDNSLEIE 358

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           II  K + A+  R+AAR+AR+  R+K   +  +LPGKLADCS ++P + E+++VEGDSAG
Sbjct: 359 IIFDKAIRAARAREAARKARESERKKSTFESLALPGKLADCSSKNPVEREIYIVEGDSAG 418

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+  F I +LR
Sbjct: 419 GSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT-FCIERLR 477

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556
           YHK+IIM DADVDG+HIRTLLLTFFFR M +L+ N  +YI  PPLY +     + Y  D+
Sbjct: 478 YHKVIIMADADVDGSHIRTLLLTFFFRYMRTLVENKHVYIAMPPLYKVKSENRVHYFYDD 537

Query: 557 ESLEDY---LINQSLSEEIELFCDSKGVISKNDLRN 589
              E +   + ++   +         G ++   L  
Sbjct: 538 LEKESFLGSIESEKRDKINLQRYKGLGEMNPTQLWE 573



 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 69/130 (53%), Gaps = 8/130 (6%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT------IFSIGRKGI 734
            + +F  +Y R                    +   +      L+       I S  R  I
Sbjct: 497 LLLTFFFRYMRTLVENKHVYIAMPPLYKVKSENR-VHYFYDDLEKESFLGSIESEKRDKI 555

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMN +QLWETT+NP TR +  + I DA QA+ +F  LMGD+VEPRREFI++
Sbjct: 556 NLQRYKGLGEMNPTQLWETTMNPATRKMKLIGIDDAMQAERIFVTLMGDDVEPRREFIEQ 615

Query: 795 NSLP-SALDI 803
           N+L    LD+
Sbjct: 616 NALDVVNLDV 625


>gi|257437729|ref|ZP_05613484.1| DNA gyrase, B subunit [Faecalibacterium prausnitzii A2-165]
 gi|257200036|gb|EEU98320.1| DNA gyrase, B subunit [Faecalibacterium prausnitzii A2-165]
          Length = 664

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/606 (43%), Positives = 383/606 (63%), Gaps = 23/606 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   +  Y+A  IQ+LKGL+AV+KRP MYIG T GE GLHH++YE++DNAIDE+L GY +
Sbjct: 12  ETATDHEYNASEIQVLKGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAIDEALAGYCN 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120
            I V +  +    V+DNGRGIP D+  + G+ A  V+ T LHAGGKF      YKV+GGL
Sbjct: 71  HIEVKILKNNIIQVTDNGRGIPVDIQADTGLPAVTVVYTILHAGGKFGGENSGYKVAGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179
           HGVG SVVNA S WL + ++R+G+ YE +F  G  D PL   G+ A   TGT VTF P  
Sbjct: 131 HGVGASVVNACSEWLTVNVRRDGHEYEQTFRRGDPDGPLKCLGTVAEGVTGTRVTFKPDP 190

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS-------------PEPREITMFY 225
           ++F     +N++TL+ RLRE SFLN+ V+I+L D+R              P  R   M Y
Sbjct: 191 EMFKDTTVYNFETLEKRLREESFLNAGVKITLTDERELYTPVLEDGQEGDPCYRTEVMCY 250

Query: 226 KGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           +GGI++FV+Y    R+ + L  + I ++G  +    ++A+++N  Y+E +L F NN+   
Sbjct: 251 EGGIKSFVTYLGEKRNLEVLHPNVIYLKGQTERGMAEIALQYNSSYNELLLSFANNVNTP 310

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTH  G R++LTR    Y       K    ++ G D REG   V+S+K+ +  F  QT
Sbjct: 311 DGGTHEEGFRTSLTRVFNDYGRSHGLLKDKDENLSGSDVREGLICVISVKLQEAEFEGQT 370

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL ++E+R++V + V   L  + EE+P  AK I +K   A+  R AA++AR+L RRK 
Sbjct: 371 KAKLGNTEIRTLVSNMVYTKLMEFFEENPGVAKAIFEKATQAARARAAAKKARELVRRKS 430

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            L+ + +PGKLADC E+DP ++E+F+VEGDSAGGSAK GR    QAILPL GK+LNVE+A
Sbjct: 431 ALETSRMPGKLADCREKDPTRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWGKMLNVEKA 490

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R D++  + ++  ++ ALG GIG++ FDI+KLRY K+ IM DADVDG+HI TL+LTFFFR
Sbjct: 491 RADRIYGNDKLMPVVLALGCGIGEE-FDISKLRYDKVFIMADADVDGSHICTLMLTFFFR 549

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            M  LI  G +Y+ +PPL+ + +G +++Y  ++  +   +++Q +           G ++
Sbjct: 550 YMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMA--ILSQEMPGAKVNRYKGLGEMN 607

Query: 584 KNDLRN 589
              L  
Sbjct: 608 PEQLWE 613



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
             L  +  G+ IK     + +  +      G  + RYKGLGEMN  QLWETT+NPD R +
Sbjct: 565 PPLFKVQKGNTIKYAYNDAEMAILSQE-MPGAKVNRYKGLGEMNPEQLWETTMNPDNRVI 623

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +++ I DA +AD+ F+ LMGD+VEPRR FI+ N+  + LD+
Sbjct: 624 VQITIEDAEKADEAFTILMGDQVEPRRRFIETNAQYAKLDV 664


>gi|228998349|ref|ZP_04157941.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock3-17]
 gi|229005832|ref|ZP_04163527.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock1-4]
 gi|228755412|gb|EEM04762.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock1-4]
 gi|228761394|gb|EEM10348.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock3-17]
          Length = 654

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 265/663 (39%), Positives = 397/663 (59%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+G IYE  F N G+    L   G     +GT + F P  
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGYIYEQRFENGGVPATTLEKIGKTK-QSGTTMHFKPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++I++ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 SIFSTTNYNYETLCERLRESAFLLKGMKITIRDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEGRSSVD 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FTVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFTVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|330685298|gb|EGG96959.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU121]
          Length = 644

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 296/591 (50%), Positives = 406/591 (68%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT+  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  DEINVTIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   GS  + TGT + F   S I
Sbjct: 125 GVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEIGST-DKTGTAIRFKADSSI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP-REITMFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  +  R+ + +Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLTDERDEDDIRQDSYYYEGGIKSYVEMLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHGEPIYIHQSKDDIEVEIAIQYNKGYSTNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K+DK  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGMNSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P   +IIV+K + AS  R AA++AR++TRRK  L+I+SLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++P++SE+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI ++IT
Sbjct: 424 KNPEESEIFLVEGDSAGGSTKSGRDSSTQAILPLRGKILNVEKARLDRILNNNEIRSMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVFNDRELDKLKAELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + +  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ RS+L+V + DA  AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVTLEDAIDADQTFEMLMGDI 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|330898604|gb|EGH30023.1| DNA gyrase subunit B [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 628

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 297/629 (47%), Positives = 400/629 (63%), Gaps = 10/629 (1%)

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 1   FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKT 58

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 59  PVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 118

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 119 NYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 178

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+D
Sbjct: 179 KYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 238

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL
Sbjct: 239 PALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 298

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI  G++YI +PPL
Sbjct: 299 GCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPL 358

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y + +GK  QY+KD+E++E+Y+   +L +      +S   IS   L   ++D   + K +
Sbjct: 359 YKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKTL 418

Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWH 654
           K     + +   E  V       E   D E   +  +    RL    +     K+     
Sbjct: 419 KRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRED 478

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
              N     V+ I+ G+            S   K       +I         +     K 
Sbjct: 479 RERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERKK 538

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +      L  + +   K  ++QRYKGLGEMN  QLWETT++P  R +L+V I DA  AD
Sbjct: 539 PVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGAD 598

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            +F+ LMGD VEPRR+FI+ N+L    LD
Sbjct: 599 QIFNTLMGDAVEPRRDFIESNALAVSNLD 627


>gi|254233410|ref|ZP_04926736.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis C]
 gi|124603203|gb|EAY61478.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis C]
          Length = 686

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA 
Sbjct: 16  KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 74

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SGGLHG
Sbjct: 75  TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 133

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F
Sbjct: 134 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              +++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 192 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 251

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+
Sbjct: 252 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 311

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 312 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 371

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AA
Sbjct: 372 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 431

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 432 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 491

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG H
Sbjct: 492 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 550

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           I TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L    
Sbjct: 551 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 610

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 611 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 658



 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 601 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 659

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 660 SILMGEDVDARRTFITRNAKDVRFLDV 686


>gi|197302273|ref|ZP_03167332.1| hypothetical protein RUMLAC_01000 [Ruminococcus lactaris ATCC
           29176]
 gi|197298704|gb|EDY33245.1| hypothetical protein RUMLAC_01000 [Ruminococcus lactaris ATCC
           29176]
          Length = 644

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 297/585 (50%), Positives = 393/585 (67%), Gaps = 5/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I V
Sbjct: 9   DAEYGADQIQILEGLEAVRKRPGMYIGSTS-VRGLHHLVYEIVDNAVDEALAGYCDKIVV 67

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N D S TV+DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 68  DINKDNSITVTDNGRGIPVGINHKAGLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 127

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ I  EG IY+  +  G +   L + G      TGT+VTFLP  +IF   
Sbjct: 128 VVNALSEWLEVEICHEGKIYKQRYERGKVCYKLRIEGDCDPELTGTKVTFLPDKEIFEET 187

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+Y+TL+ R RE++FL   ++I L D R  E  E T  Y+GGI+ FV+YL++ K PL  
Sbjct: 188 VFDYNTLKQRFREMAFLTKGLKIQLRDLREEEVHEHTFHYEGGIKEFVTYLNKSKTPLYD 247

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +DN+ +++AM+ ND Y+E    F NNI   +GGTH++G RSALT+    Y +
Sbjct: 248 QIIYCEGMKDNVYVEVAMQHNDSYNETTYGFVNNITTPEGGTHIAGFRSALTKTFNDYAK 307

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K+ ++ + GDD REG T+++S+K+ DP+F  QTK+KL +SE R  V++ V   L 
Sbjct: 308 KNKLLKESEQ-LSGDDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNIVRTQLE 366

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK+ + K + A   R+AAR+ARDLTRRK  L+  SLPGKLADCS++DP K 
Sbjct: 367 IFLEQNPSVAKLTIDKSMMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPSKC 426

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+  + EI  +ITA GTGI
Sbjct: 427 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGI 486

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + 
Sbjct: 487 -HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQPPLYKLE 545

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + K + Y   +E L   L                 G +    L +
Sbjct: 546 KNKKVWYAYSDEELNQILTEVGRDNNNKIQRYKGLGEMDAEQLWD 590



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 9/122 (7%)

Query: 691 RIFSNRIEENYL-----TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGE 744
           R   + I+E Y+      +  L  N           L   +  +GR   + +QRYKGLGE
Sbjct: 523 RFMPDLIKEGYVYLAQPPLYKLEKNKKVWYAYSDEELNQILTEVGRDNNNKIQRYKGLGE 582

Query: 745 MNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-AL 801
           M+A QLW+TT++P+ R LLRV + D +  + D  F+ LMGD+VEPRREFI+EN+     L
Sbjct: 583 MDAEQLWDTTMDPEHRILLRVTMDDETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNL 642

Query: 802 DI 803
           DI
Sbjct: 643 DI 644


>gi|50364821|ref|YP_053246.1| DNA gyrase subunit B [Mesoplasma florum L1]
 gi|50363377|gb|AAT75362.1| DNA gyrase subunit B [Mesoplasma florum L1]
          Length = 635

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 268/645 (41%), Positives = 389/645 (60%), Gaps = 15/645 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A+SI++LKGL+AV+KRP MYIG T    GLHH+++E++DN++DE++ G+A+ I
Sbjct: 1   MAEQNYGAESIKVLKGLEAVRKRPGMYIGSTSKA-GLHHLVWEIMDNSVDEAMAGFANKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            +T+  +G   V DNGRGIP  +  + G SA E++ T+LHAGGKF+  SYK+SGGLHGVG
Sbjct: 60  ILTITKEGEIIVQDNGRGIPVGIQADSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
            SVVNALS ++ +++KREG I+   F  G      + + G   N+TGT V F P  +IF 
Sbjct: 120 ASVVNALSLYVDVQVKREGKIHHQVFSGGGTQQTEIEIIGET-NETGTIVRFKPDPEIFL 178

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +F+Y+T+++++++LS+LN  + I L D R  +  E       GI  +V   +  K  
Sbjct: 179 EGTEFDYETIRNKVKQLSYLNKGLVIELNDLRIDKHVEYHF--PNGILDYVKEKNETKVK 236

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +  S   +    D+I +++A+++N  Y EN++ F NNI   +GGTH  GLR +L R I  
Sbjct: 237 INPSIFYVDDKHDDIEVEVALQYNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINR 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y EK     K       DD +EG   ++SI+  DP++  QTK KL + + +  V++ V D
Sbjct: 297 YAEKVATGNKPAAKYSWDDIKEGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGD 356

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L + P +AK I+ K  +A   R AA+RAR+ TRRK  LD  SLPGKLADC  +DP
Sbjct: 357 AFEEFLLKSPEDAKAIIDKNANAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDP 416

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           + +EL+LVEGDSAGGSAK GR+R  QAILPLRGK+LNVER    +  ++ EI +++TA+G
Sbjct: 417 EIAELYLVEGDSAGGSAKTGRNRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIG 476

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TGI +D  D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M  L+ +G +YI +PPLY
Sbjct: 477 TGIKEDI-DLSKLRYGKIVIMTDADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLY 535

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y   +  LE+             F DS+  I +      +D     +  + 
Sbjct: 536 KIEAGKKVAYAYSDVELEELK--------AGDFKDSRFTIQRYKGLGEMDPIQLWETTMD 587

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  +  +E A I+     +   E      + +     F+  
Sbjct: 588 PEKRTMLQIKLEDAAIANEVFSDLMGEDPELRRNYIQENAEFVEN 632



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 8/187 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    S      +V      V    +    
Sbjct: 451 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLL 510

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    + +    +       L  I  G K+        L+ +    F   R   ++
Sbjct: 511 LTFFYRYMKQLVVDGHVY-IAQPPLYKIEAGKKVAYAYSDVELEELKAGDFKDSR--FTI 567

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEM+  QLWETT++P+ R++L++K+ DA+ A+++FS LMG++ E RR +IQEN+
Sbjct: 568 QRYKGLGEMDPIQLWETTMDPEKRTMLQIKLEDAAIANEVFSDLMGEDPELRRNYIQENA 627

Query: 797 LPS-ALD 802
                +D
Sbjct: 628 EFVENID 634


>gi|291297295|ref|YP_003508693.1| DNA topoisomerase (ATP-hydrolyzing) [Meiothermus ruber DSM 1279]
 gi|290472254|gb|ADD29673.1| DNA topoisomerase (ATP-hydrolyzing) [Meiothermus ruber DSM 1279]
          Length = 643

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 282/645 (43%), Positives = 392/645 (60%), Gaps = 16/645 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS ++  +SYDA +I++LKGL+ V+ RP+MYIG T    G HH+  E+LDNA+DE+L G+
Sbjct: 1   MSTDL-TTSYDASAIKVLKGLEGVRHRPAMYIGGTQA-DGYHHLFKEILDNAVDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I  TL+ DGS TV DNGRGIP D+  EE   A EVI T LHAGGKF + +YKVSGGL
Sbjct: 59  ATEIVTTLHPDGSITVEDNGRGIPVDIMPEEQKPAVEVIYTVLHAGGKFEEGAYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVG SVVNALS + ++ + R+G  + + F  G +  PL V G A     GT VTFLP  
Sbjct: 119 HGVGASVVNALSEFTRVEVFRDGKHHLIEFSRGEVTRPLQVVGEAPKGKRGTRVTFLPDP 178

Query: 180 DIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF S Q F    L+ RLRE+SFL + +++   D+   +      F KGG+ +F  +   
Sbjct: 179 QIFGSEQKFEASRLRVRLREVSFLVAGLKLVFKDEIHQKE--EVFFDKGGVASFAKFRAD 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L   P+ +QG  + + +++ +    GY  +++ F N IP  DGGTH+SG ++A TR
Sbjct: 237 GEELLYDKPVLLQGQVEAVGVEVGLVHTKGYSADLVSFANMIPTVDGGTHVSGFKTAYTR 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y +K+           GDD  EG + V+S+K+P P+F  QTK KL++ E  + V  
Sbjct: 297 AINTYAKKAG--LVKDLEPTGDDLLEGLSCVISVKIPQPQFEGQTKGKLLNPEAGTAVSR 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V +  S +LEE+P  AK+I +K   A+  R+AAR+AR+L RR   L+   LPGKLADC 
Sbjct: 355 VVYEKFSEYLEENPRIAKMIYEKAQRAAQAREAARKARELVRRANPLESDDLPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
             DP ++ELF+VEGDSAGGSAK GR R  QAILPLRGKILNVE+A  +K L + E+  ++
Sbjct: 415 SEDPAEAELFIVEGDSAGGSAKSGRDRRFQAILPLRGKILNVEKAGLNKALKNAEVRAMV 474

Query: 479 TALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
            A+G GIG     +  F+I  LRYHKIIIMTDADVDG+HIRTLLLTFF+R M  +I  G+
Sbjct: 475 AAIGAGIGGKDNEEAHFNIEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPIIERGY 534

Query: 534 LYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN-F 590
           LY+ +PPLY   + + K ++Y+ D+E+L+  L N              G ++   L    
Sbjct: 535 LYVAQPPLYGLRVGKSKQMEYIFDDEALKKALANIGDKPYEIQRFKGLGEMNAEQLWETT 594

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
           +D A ++ K +     ++     +  + S V       E N   A
Sbjct: 595 MDPARRVLKKVDMKDASYAAQIFDDLMGSDVQPRREFIEENARFA 639



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 647 EKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
           +  E  ++        ++      V    +      F +      I    +      +  
Sbjct: 485 DNEEAHFNIEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPIIERGYLYVAQPPLYG 544

Query: 707 LICNGDKI--KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
           L     K    I    +L   + +IG K   +QR+KGLGEMNA QLWETT++P  R L +
Sbjct: 545 LRVGKSKQMEYIFDDEALKKALANIGDKPYEIQRFKGLGEMNAEQLWETTMDPARRVLKK 604

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           V + DAS A  +F  LMG +V+PRREFI+EN+  + +++
Sbjct: 605 VDMKDASYAAQIFDDLMGSDVQPRREFIEENARFARIEV 643


>gi|315222934|ref|ZP_07864813.1| DNA topoisomerase IV, B subunit [Streptococcus anginosus F0211]
 gi|315187884|gb|EFU21620.1| DNA topoisomerase IV, B subunit [Streptococcus anginosus F0211]
          Length = 649

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 274/649 (42%), Positives = 397/649 (61%), Gaps = 19/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT++ DGS TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDKIDVTIHKDGSLTVADHGRGMPVGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G IY+  F N G     L   G+ A + +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTIYKQRFENGGKPATTLKKIGTAAKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL E +FL  +V +SL D+R+ E   +   Y+ G++ FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTISERLNESAFLLKNVHLSLTDERTGES--VDFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      +++A+++NDGY +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEEGGFQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRSGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGSD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  LED          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRKKFGKGAMLQRYKGLGEMNADQLWET 594

Query: 590 FI--DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +  ++   I   I D      +  +             +  +  +L  
Sbjct: 595 TMNPENRTLIRVTIDDLARAERRVNVLMGDKVPPRRKWIEDNVKFTLEE 643



 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 55/73 (75%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L+ +     KG  +QRYKGLGEMNA QLWETT+NP+ R+L+RV I D ++A+   + LMG
Sbjct: 564 LEDLRKKFGKGAMLQRYKGLGEMNADQLWETTMNPENRTLIRVTIDDLARAERRVNVLMG 623

Query: 783 DEVEPRREFIQEN 795
           D+V PRR++I++N
Sbjct: 624 DKVPPRRKWIEDN 636


>gi|42782667|ref|NP_979914.1| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 10987]
 gi|217960999|ref|YP_002339567.1| DNA topoisomerase IV subunit B [Bacillus cereus AH187]
 gi|229140210|ref|ZP_04268768.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST26]
 gi|42738593|gb|AAS42522.1| DNA topoisomerase IV, B subunit [Bacillus cereus ATCC 10987]
 gi|217067922|gb|ACJ82172.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH187]
 gi|228643296|gb|EEK99569.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST26]
          Length = 654

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 402/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   ++ L++          ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|119487794|ref|ZP_01621303.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106]
 gi|119455627|gb|EAW36764.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106]
          Length = 645

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 295/591 (49%), Positives = 403/591 (68%), Gaps = 9/591 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L G+   I V
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGHCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
             N DGS TV+D+GRGIP D+H + G SA E +MT LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  DFNADGSVTVTDDGRGIPVDVHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS W+++++ R+   Y   +  G+  + L    S G  TGT V FLP + IF+   
Sbjct: 121 VVNALSEWVEVQVLRDETQYTQRYQRGVPVDELQSKPSQGKQTGTSVQFLPDTTIFTTGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDK-----RSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+Y T+ +RLREL++LN+ V+I+L D      +  E +  +  Y+GGI  +++Y++R K
Sbjct: 181 EFDYATIANRLRELAYLNAGVRITLTDNRLDLIQLEEAKTESFCYEGGIREYIAYMNREK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +PL +  I + G R+N+ I++A++W  D Y +N+L F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QPLHEDVIYVSGERNNVQIEVALQWCVDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++  K    K+++ ++ G++ REG T+V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 MNNFARKRNKLKENESNLGGENVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +L+ HP  A  +++K + A    +AARRARDL RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLTEYLDFHPHIADAVLEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCST 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R P +SE+FLVEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI +LIT
Sbjct: 421 RIPAESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQSLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GI  + FD ++LRYHKIIIMTDADVDGAHIRTLLLTFF+R    L+  GF+YI  P
Sbjct: 481 ALGLGIRGEDFDSSQLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQRELVEQGFIYIACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PLY + RG++  Y  ++  L++ L     +           G +    L N
Sbjct: 541 PLYKVERGRNHYYCYNDRELQERLAEFPSNANYNIQRFKGLGEMMPEQLWN 591



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)

Query: 681 SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQ 737
            + +F  +Y+R    +  I      +  +    +         L + +         ++Q
Sbjct: 517 LLLTFFYRYQRELVEQGFIYIACPPLYKVERGRNHYYCYNDRELQERLAEFPSNANYNIQ 576

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS- 796
           R+KGLGEM   QLW TT+NP+TR + +V++ DA+QAD++F+ LMGD V PRREFI+ N+ 
Sbjct: 577 RFKGLGEMMPEQLWNTTMNPETRMIKQVEVEDAAQADNVFTVLMGDRVAPRREFIETNAP 636

Query: 797 -LP-SALDI 803
            L    LDI
Sbjct: 637 RLNLVDLDI 645


>gi|315659991|ref|ZP_07912849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           lugdunensis M23590]
 gi|315494892|gb|EFU83229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           lugdunensis M23590]
          Length = 644

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 296/640 (46%), Positives = 415/640 (64%), Gaps = 6/640 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  DQIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F   S+I
Sbjct: 125 GVGSSVVNALSEDLEVYVHRNETIYHQAYKKGVPQFDLKEVGET-DKTGTVIRFKADSEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    ++YDTLQ R+REL+FLN  + I+L D+R  E +      Y+GGI+++V  ++ +
Sbjct: 184 FTETTVYDYDTLQKRIRELAFLNKGISITLKDERDDEEQREDTYHYEGGIKSYVELMNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+ + PI I   +D+I I++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHEEPIYIHQMKDDIEIEIAIQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY  KS   K+DK  + G+D REG T+V+SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGTKSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+IIV+K + AS  R AA++AR++TRRK  L+I+SLPGKLADCS 
Sbjct: 364 FSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISSLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++P +SE+F+VEGDSAGGS K+GR    QAILPLRGKILNVE++R D++L++ EI  +IT
Sbjct: 424 KNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKID 598
           PL+ +T+GK   YV +++ L+      S +           G ++ + L     +     
Sbjct: 543 PLFKLTQGKQKYYVFNDKELDKLKSELSPTPKWQISRYKGLGEMNADQLWETTMNPDNRM 602

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            L        +     + ++  V         + ++ + L
Sbjct: 603 MLQVRLDDAIEADKTFEMLMGDVVENRRQFIEDNAVYATL 642



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 32/287 (11%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            +      +++ +  ++   ++ + + +    +       +++      I          
Sbjct: 362 KLFSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISSLPGKLADC 421

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI---- 657
               P+  + FI +   +G    E       ++       LN    + ++  + +     
Sbjct: 422 SSKNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRQM 481

Query: 658 ---------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
                       DI   R  +        V    +      F +      I +  +    
Sbjct: 482 ITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTL 755
             +  L     K  +      LD + S     +S      + RYKGLGEMNA QLWETT+
Sbjct: 542 PPLFKLTQGKQKYYVFNDKE-LDKLKSE----LSPTPKWQISRYKGLGEMNADQLWETTM 596

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           NPD R +L+V++ DA +AD  F  LMGD VE RR+FI++N++ + LD
Sbjct: 597 NPDNRMMLQVRLDDAIEADKTFEMLMGDVVENRRQFIEDNAVYATLD 643


>gi|7387745|sp|Q9ZAQ6|GYRB_MYCAT RecName: Full=DNA gyrase subunit B
 gi|4099106|gb|AAD09234.1| gyrase B [Mycoplasma arthritidis]
          Length = 638

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 253/599 (42%), Positives = 365/599 (60%), Gaps = 14/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   + S Y A +IQ L+GL+AV+KRP MYIG   G  GLHH+I+E++DN++DE++ G+
Sbjct: 1   MSKQEEISKYGAKNIQFLEGLEAVRKRPGMYIGSI-GFRGLHHLIWEIVDNSVDEAMAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ +    V DNGRG+P D+H     SA E I+T L+AGGKF+  +YKVSGGL
Sbjct: 60  ATNIEVKLHPNNEIEVIDNGRGMPVDIHPTTKKSAVETILTVLYAGGKFDSTNYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178
           HGVGVSVVNALS   ++ +KR G  Y   +IN G    PL V G    ++TGT + F P 
Sbjct: 120 HGVGVSVVNALSDSFEVWVKRGGKFYYQKYINGGHPVKPLEVIGEVNKDETGTRIKFHPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I     F++ T+    +++++LN  + IS   +   +       ++GGI  +VS L+R
Sbjct: 180 YQIMDKVAFDFGTIIDHAKQIAYLNKGLSISC--EDITKNTIRNFCFEGGIIDYVSELNR 237

Query: 239 HKKPLMQSPIRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            KK ++   I  +G+         ++ +++A+++N+ Y  N++ + NNI   +GGTH  G
Sbjct: 238 GKKVIIPDIIYAEGTFRDKTPNAQDVIVNVAIQYNETYTSNIVSYANNIQTGEGGTHEQG 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
              ALTR    Y E +   K +   +  +D ++G  +++SIK  DP F  QTK KL + +
Sbjct: 298 FYDALTRIYNKYAEDNKLFKNNNEKISREDTKDGLVAIISIKHTDPIFEGQTKGKLENKD 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            R      +++ L  ++ E+P  AK I++K L     R AA  AR+ +R+K   +  +LP
Sbjct: 358 ARIATNKIISEQLERYMAENPSHAKAIIEKCLLTQRSRLAANAAREASRKKEGSEFGNLP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS ++ +  ELF+VEG+SAGGSAK GR R  QAILPLRGKI+N E+  F  ++S+
Sbjct: 418 GKLADCSSKNAEVRELFIVEGNSAGGSAKMGRDRATQAILPLRGKIINAEKQDFTSVMSN 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +E+ ++I ALGTGI  D F+INKL+YHKI+IMTDADVDGAHI TLLLTFF+R M  LI  
Sbjct: 478 KEVSSMIHALGTGI-TDEFNINKLKYHKIVIMTDADVDGAHIATLLLTFFYRYMRPLIEY 536

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           GF+YI +PPLY I+  K  +Y  ++   E+ L     S+ I        G +    L  
Sbjct: 537 GFVYIAQPPLYKISTAKVTEYAYNDAQKEEILSKLEDSKNISIQRYKGLGEMDPEQLWE 595



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
             +L  +     K IS+QRYKGLGEM+  QLWETT+NP TR 
Sbjct: 565 EEILSKLEDS--KNISIQRYKGLGEMDPEQLWETTMNPATRK 604


>gi|302669379|ref|YP_003829339.1| DNA gyrase subunit B GyrB [Butyrivibrio proteoclasticus B316]
 gi|302393852|gb|ADL32757.1| DNA gyrase subunit B GyrB [Butyrivibrio proteoclasticus B316]
          Length = 650

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 286/595 (48%), Positives = 395/595 (66%), Gaps = 10/595 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+      Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DN++DE+L G+
Sbjct: 5   MSEEAVK--YGADQIQILEGLEAVRKRPGMYIG-TTASRGLHHLVYEIVDNSVDEALAGF 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D +  V DNGRGIP D++ + G++  EV+ T LHAGGKF    YKVSGGL
Sbjct: 62  CDHIEVTINEDNTIIVQDNGRGIPVDVNHKSGLTGVEVVFTILHAGGKFGGGGYKVSGGL 121

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSS 179
           HGVG SVVNALS WL++++ R G +Y+  +  G +  PL   G+A  + TGT V F P +
Sbjct: 122 HGVGASVVNALSEWLEVQVTRRGKVYQQRYERGKVCYPLKEVGTAPENVTGTRVYFKPDA 181

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLID---KRSPEPREITMFYKGGIEAFVSY 235
           +IF     F Y  L+ RLRE++FL   ++I+L D   +   +P + T  Y+GGI+ FV Y
Sbjct: 182 EIFRETTVFEYSVLKQRLREMAFLTKGLKITLTDKRVEEGEDPIQQTFHYEGGIKEFVQY 241

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K  L    +  +G+R+N+ ++++ + ND Y+E++  F NNI   +GGTHL G ++A
Sbjct: 242 LNKNKTSLYGDIMYFEGNRNNVQVEVSFQHNDSYNESIYTFVNNINTPEGGTHLEGFKAA 301

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT+    Y   +   K  + ++ G+D REG T+++S+K+ DP+F  QTK+KL +SE R  
Sbjct: 302 LTKTFNDYARANKMLKDSEENLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGA 361

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   V++ L+ +LE++P  AK I++K + A   RDAAR+ARDLTRRK  LD   LPGKLA
Sbjct: 362 VAGVVSEQLTYYLEQNPNVAKQILEKAILAQRARDAARKARDLTRRKSALDGMGLPGKLA 421

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS++DPK  E+F+VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR D++  + EI 
Sbjct: 422 DCSDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARVDRIYGNAEIK 481

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            +ITA GTGI  D FDI+KLRY KIIIMTDADVDGAHI TL+LTF +R MP LI  G +Y
Sbjct: 482 AMITAFGTGI-HDDFDISKLRYDKIIIMTDADVDGAHISTLMLTFLYRFMPELIKQGHVY 540

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           + +PPLY + + K + Y   +E L+  L +    +          G +    L  
Sbjct: 541 LAQPPLYKLEKNKKVWYAYSDEELDKILTDVGRDQNNKIQRYKGLGEMDPEQLWE 595



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 5/106 (4%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760
             L  +    K+        LD I +   +  +  +QRYKGLGEM+  QLWETT++P+ R
Sbjct: 544 PPLYKLEKNKKVWYAYSDEELDKILTDVGRDQNNKIQRYKGLGEMDPEQLWETTMDPERR 603

Query: 761 SLLRVKITDASQA--DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            LLRV + + S +  D  F+ LMGD+VEPRREFI++N+     +DI
Sbjct: 604 VLLRVNMDEESSSDIDVTFTTLMGDKVEPRREFIEKNAKFVKNIDI 649


>gi|118478841|ref|YP_895992.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis str. Al
           Hakam]
 gi|225865579|ref|YP_002750957.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB102]
 gi|229185832|ref|ZP_04313005.1| DNA topoisomerase 4 subunit B [Bacillus cereus BGSC 6E1]
 gi|118418066|gb|ABK86485.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis str. Al
           Hakam]
 gi|225790247|gb|ACO30464.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB102]
 gi|228597544|gb|EEK55191.1| DNA topoisomerase 4 subunit B [Bacillus cereus BGSC 6E1]
          Length = 654

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 402/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   ++ L++          ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|311030250|ref|ZP_07708340.1| DNA topoisomerase IV subunit B [Bacillus sp. m3-13]
          Length = 655

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 271/659 (41%), Positives = 393/659 (59%), Gaps = 22/659 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N     Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE+LDN++DE+L GY
Sbjct: 1   MAKNTF--EYNDDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEILDNSVDEALGGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDHIIVTIHKDNSISVKDKGRGMPTGMH-KMGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+G +YE  F N G     L   G   N TGT + F P +
Sbjct: 117 HGVGASVVNALSEWLTVTIKRDGIVYEQRFENGGKPVTTLEKIG-TTNQTGTTIHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   +N++TL  RLRE +FL   ++I L D+R+    +    Y+ GIEAFV+YL+  
Sbjct: 176 TIFSTTTYNFETLCERLRESAFLLKGLKIELNDERN--SVKEVFHYESGIEAFVTYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L  + +  +G+++ I ID A ++NDGY E +L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSLH-NVVSFEGAQNGIEIDFAFQFNDGYSETILSFVNNVRTKDGGTHEAGAKTAMTRI 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 293 FNEYARKVNLLKEKDKNLDGSDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V++ L+ +LEE+P  + ++VKK + A   R+AAR+AR+   + +K     A L GKL 
Sbjct: 353 SVVSEHLAYFLEENPETSSMLVKKSIKAFQAREAARKAREDARSGKKRKRSDAMLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+E++LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNEIYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G   F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIHAIGGGVG-PDFSVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEFGKVF 531

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYL---INQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY +++G   + V +    ++ L   I +             G ++ + L     
Sbjct: 532 IALPPLYKVSKGTGKKEVLEYAWSDEELQGAIQKIGRGYTIQRYKGLGEMNADQLWET-- 589

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
               ++   +                      +  +     + S +A  L       E 
Sbjct: 590 ---TMNPDTRTLIRVRIDDAARAERRVTTLMGDKVEPRRKWIESHVAFGLEEDPNILEN 645



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +       ++               +      S  +          ++   +
Sbjct: 368 ETSSMLVKKSIKAFQAREAARKAREDARSGKKRKRSDAMLSGKLTPAQSRNPQKNEIYLV 427

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QAV+     V N E  +  ++    ++   ++ I       + 
Sbjct: 428 EGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGPDFS 487

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
               N D +V           +      F +      I   ++      +  +     K 
Sbjct: 488 VEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEFGKVFIALPPLYKVSKGTGKK 547

Query: 715 KIT----GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IGR G ++QRYKGLGEMNA QLWETT+NPDTR+L+RV+I DA
Sbjct: 548 EVLEYAWSDEELQGAIQKIGR-GYTIQRYKGLGEMNADQLWETTMNPDTRTLIRVRIDDA 606

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+ +
Sbjct: 607 ARAERRVTTLMGDKVEPRRKWIESH 631


>gi|270289888|ref|ZP_06196114.1| DNA gyrase, B subunit [Pediococcus acidilactici 7_4]
 gi|270281425|gb|EFA27257.1| DNA gyrase, B subunit [Pediococcus acidilactici 7_4]
          Length = 648

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 290/598 (48%), Positives = 396/598 (66%), Gaps = 11/598 (1%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D  +        YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE
Sbjct: 1   MADEKETKAELAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A+ I V +  D S TVSDNGRGIP D+ K+ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFANKIDVVVEKDNSITVSDNGRGIPVDIQKKTGKPALETVYTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEV 173
           VSGGLHGVG SVVNALS+ L  R+ R+G IY + F  G +  P+ V G   N    GT V
Sbjct: 120 VSGGLHGVGASVVNALSTELDARVMRDGKIYYIDFEQGKVKTPMKVLGPTKNPDDHGTIV 179

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  DIF     F+ + L+ R+REL+FLN  ++I+L D R  +P E    Y+GGI  +
Sbjct: 180 HFVPDPDIFQETTVFDINILRTRIRELAFLNKGLRITLRDMRPEKPTEDDFLYEGGIRHY 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL++ K+ +   PI ++G    I++++AM++ +GY   +L FTNNI   +GGTH  G 
Sbjct: 240 VEYLNKGKEVIFPEPIYVEGITKGITVEVAMQYIEGYQSKLLTFTNNIHTYEGGTHEEGF 299

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           + ALTR I  Y + +   K++   + GDD REG T+V+S+K PDP+F  QTK KL +S+ 
Sbjct: 300 KRALTRVINDYAKNNGILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDA 359

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+ V     +  S +L E+P  A+ IV K   A+  R AA+RAR++TR+K  L++ +LPG
Sbjct: 360 RTAVNEVFAETFSKFLLENPKVARQIVDKGTLAAKARIAAKRAREVTRKKSGLELNNLPG 419

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLAD + +DP+ SELF+VEGDSAGGSAK GRSR  QAILP+RGKILNVE+A  D++L+++
Sbjct: 420 KLADNTSKDPEISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATLDRVLANE 479

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI +L TALGTG G+D FD+ K  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G
Sbjct: 480 EIRSLFTALGTGFGED-FDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAG 538

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           ++YI +PPLY + +GK ++Y+  +E LE  L   S S + +       G +    L  
Sbjct: 539 YVYIAQPPLYQVRQGKMIKYIDSDEELEAVLGQLSPSPKPVIQRYKGLGEMDAEQLWE 596



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 15/223 (6%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           ++ + QA++     + N E      V    ++ +    +  
Sbjct: 431 ISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATLDRVLANEEIRSLFTALGT 490

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
              + +  +  N   L+      V    +        +      I +  +       L  
Sbjct: 491 GFGEDFDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAGYVY-IAQPPLYQ 549

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTLNPDTRS 761
           +  G  IK       L+ +       +S      +QRYKGLGEM+A QLWETT+NP+ R 
Sbjct: 550 VRQGKMIKYIDSDEELEAVLGQ----LSPSPKPVIQRYKGLGEMDAEQLWETTMNPENRR 605

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LLRV   D   A+  F  LMGD+VEPRR+FI++N++    LDI
Sbjct: 606 LLRVSADDLDAANGDFEMLMGDKVEPRRKFIEDNAVFVENLDI 648


>gi|9622089|gb|AAF89615.1|AF167433_1 gyrase B [Thermus thermophilus]
          Length = 634

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 270/585 (46%), Positives = 370/585 (63%), Gaps = 7/585 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA +I++LKGL+ V+ RP+MYIG T G  G HH+  E+LDNA+DE+L GYA  I V L
Sbjct: 2   SYDASAIRVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEILVRL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS TV DNGRGIP DL  EEG  A EVI   LH+GGKF Q +YKVSGGLHGVG SVV
Sbjct: 61  NEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDF 187
           NALS W  + + REG  + ++F  G +  PL V G A    TGT VTF P  +IF    F
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRF 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +   ++ RLRE+++L + +++   D++  +        KGG+ +F   L   +  L + P
Sbjct: 181 DPSKIRARLREVAYLVAGLKLVFQDRQHGKE--EVFLDKGGVASFAKALAEGEDLLYEKP 238

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             I+G+   + +++      GY+  +L + N IP +DGGTHL+  +SA +R +  Y +K+
Sbjct: 239 FLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKA 298

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +K+      GDD  EG  +V+S+K+P+P+F  QTK KL++ E  + V   V + L   
Sbjct: 299 GLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEI 358

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LEE+P  AK + +K L A+  R+AAR+AR+L RR+  L+   LPGKLADC   +P+++EL
Sbjct: 359 LEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQTENPEEAEL 418

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI-- 485
           F+VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K L + E+  +++A+G  +  
Sbjct: 419 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVSAIGVAVGG 478

Query: 486 -GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G+  FD+  LRYHKIIIMTDADVDG+HIRTLLLTFF+R M  LI  G +YI +PPLY +
Sbjct: 479 DGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYRL 538

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             GK ++Y+  +E L+  L                G ++   L  
Sbjct: 539 QVGKKVEYLYSDEELQARLKELEGKHYEVQRFKGLGEMNPEQLWE 583



 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 77/174 (44%)

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKY 689
            N  + + ++     +    E  +         ++      V    +      F +    
Sbjct: 461 KNAEVRAMVSAIGVAVGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMR 520

Query: 690 KRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749
             I    +      +  L        +     L   +  +  K   +QR+KGLGEMN  Q
Sbjct: 521 PLIERGHVYIAQPPLYRLQVGKKVEYLYSDEELQARLKELEGKHYEVQRFKGLGEMNPEQ 580

Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           LWETT+NP+ R L RV++ DA +A +LF +LMG EV PRREFI+E++  + LDI
Sbjct: 581 LWETTMNPEKRVLKRVELQDALEASELFEKLMGQEVAPRREFIEEHARYAELDI 634


>gi|196044488|ref|ZP_03111723.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB108]
 gi|206975544|ref|ZP_03236457.1| DNA topoisomerase IV, B subunit [Bacillus cereus H3081.97]
 gi|229197705|ref|ZP_04324425.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1293]
 gi|196024523|gb|EDX63195.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB108]
 gi|206746446|gb|EDZ57840.1| DNA topoisomerase IV, B subunit [Bacillus cereus H3081.97]
 gi|228585782|gb|EEK43880.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1293]
 gi|324327495|gb|ADY22755.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 654

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 402/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   ++ L++          ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|229031253|ref|ZP_04187259.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1271]
 gi|228730011|gb|EEL80985.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1271]
          Length = 654

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631


>gi|197303041|ref|ZP_03168089.1| hypothetical protein RUMLAC_01768 [Ruminococcus lactaris ATCC
           29176]
 gi|197297896|gb|EDY32448.1| hypothetical protein RUMLAC_01768 [Ruminococcus lactaris ATCC
           29176]
          Length = 640

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 257/626 (41%), Positives = 365/626 (58%), Gaps = 17/626 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS      +YDA SI +L+GL+AV+ RP MYIG      GL+H++YE++DNA+DE L G+
Sbjct: 1   MSRKT---TYDAGSIAVLEGLEAVRVRPGMYIGSVS-TKGLNHLVYEIVDNAVDEHLAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VTL  DGS TVSDNGRG+P D+H++ GISAA ++ T LHAGGKF+  +YK SGGL
Sbjct: 57  CTEIHVTLEKDGSATVSDNGRGVPVDMHQK-GISAARLVYTTLHAGGKFDDSAYKTSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTF 175
           HGVG SVVNALS+++ ++I R+G I+   +  GI    L        G     TGT V F
Sbjct: 116 HGVGSSVVNALSAYMDVKISRDGYIHHDRYERGIPVIELEDGLLPKIGKT-RKTGTTVNF 174

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LP   IF    F  + ++ RL E ++LN  + I   DKR     +I      GI  F++ 
Sbjct: 175 LPDDTIFEKTRFKAEEIKSRLHETAYLNPKLTIFFEDKRQGSEEKIEYHEPEGIIGFITD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++  K+ L   PI  +G  D I +++A+++ + +HENV+ F NNI   +GGTHL+G ++ 
Sbjct: 235 MNHKKEVLH-EPIYFKGEADGIGVEVALQYVNEFHENVVGFCNNIYNAEGGTHLTGFKTT 293

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
            T  +  Y  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +    
Sbjct: 294 FTTVMNQYARELGVLKEKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKA 353

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V     + +  + + +    K ++     A+ +R    RA+     K         GKLA
Sbjct: 354 VGKVTGEEIVRFFDRNIETLKTVLSSAEKAAKIRKTEERAKTNLLTKQK-YSFDSNGKLA 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           +C  RDPKK E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI 
Sbjct: 413 NCESRDPKKCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKASIDKVLANAEIK 472

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           T+I A G G  +   + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G
Sbjct: 473 TMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEG 532

Query: 533 FLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
            +YI  PPLY    +    +Y+ D+++LE Y  N +    ++ +     + ++      +
Sbjct: 533 HVYIAMPPLYKAMPKKGEEEYLYDDKALEKYRKNHTGPFTLQRYKGLGEMDAEQLWETTL 592

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAV 617
           D   ++ KL++        +  E  +
Sbjct: 593 DPERRLLKLVEIEDARMASSVTEMLM 618



 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 11/100 (11%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G++  +       D      RK      ++QRYKGLGEM+A QLWETTL+P+ R LL+
Sbjct: 547 KKGEEEYLYD-----DKALEKYRKNHTGPFTLQRYKGLGEMDAEQLWETTLDPE-RRLLK 600

Query: 765 -VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            V+I DA  A  +   LMG EV PR+ FI EN+  + LDI
Sbjct: 601 LVEIEDARMASSVTEMLMGTEVPPRKAFIYENATEAELDI 640


>gi|212639275|ref|YP_002315795.1| DNA topoisomerase IV subunit B [Anoxybacillus flavithermus WK1]
 gi|212560755|gb|ACJ33810.1| DNA topoisomerase IV subunit B [Anoxybacillus flavithermus WK1]
          Length = 657

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 257/593 (43%), Positives = 375/593 (63%), Gaps = 16/593 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   I VT+
Sbjct: 10  TYNEDTIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALAGYGKRIIVTI 68

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGLHGVG SVV
Sbjct: 69  HNDQSISVQDEGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 127

Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           NALS WL++ I R+G IY   F + G     L   G     TGT++ F P   IFS   F
Sbjct: 128 NALSEWLEVTIHRDGFIYYQRFEHGGKPVTTLEKIGVTK-QTGTKIQFKPDPTIFSTTTF 186

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +++T+  RLRE +FL   ++I L D+R+      T +Y+ GIEAFV YL+  K  L    
Sbjct: 187 HHETISERLRESAFLLKGLKIELYDERTG--LCDTFYYENGIEAFVQYLNEEKDVLHP-V 243

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +   G + +I ++ A +++DGY EN+L F N++  KDGGTH  G ++A+TR    Y  K 
Sbjct: 244 VFFTGEQSDIEVEFAFQFHDGYAENMLSFVNHVRTKDGGTHEIGAKTAMTRVFNEYARKV 303

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              K+  +++ G D REG ++++S+++P+   +F  QTK KL + E RS VE+ V++ L+
Sbjct: 304 GLLKERDKNLEGTDIREGLSAIISVRIPEALLQFEGQTKGKLGTPEARSAVEAVVSEKLT 363

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPK 423
            +L E+P  A +++KK + A   R+AAR+AR+   + +K       L GKL     R+P+
Sbjct: 364 YFLNENPDIATLLIKKAIRAFQAREAARKAREEARSGKKRKGKEHVLSGKLTPAQTRNPQ 423

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI T+I A+G 
Sbjct: 424 KNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGG 483

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+G D F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G ++I  PPLY 
Sbjct: 484 GVGAD-FSLDDIHYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFIALPPLYK 542

Query: 544 IT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           ++    + + ++Y   +E L+  L        I+ +     + +       ++
Sbjct: 543 VSKKVGKKEVVEYAWTDEQLQSILKKIGKGYTIQRYKGLGEMNADQLWETTMN 595



 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 43/95 (45%), Positives = 64/95 (67%)

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              +   +   + ++       L +I     KG ++QRYKGLGEMNA QLWETT+NP+TR
Sbjct: 540 LYKVSKKVGKKEVVEYAWTDEQLQSILKKIGKGYTIQRYKGLGEMNADQLWETTMNPETR 599

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV+I DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 600 TLIRVRIDDAARAERRVTTLMGDKVEPRRKWIESN 634


>gi|302386253|ref|YP_003822075.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
 gi|302196881|gb|ADL04452.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
          Length = 639

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 260/641 (40%), Positives = 380/641 (59%), Gaps = 14/641 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ADSI +L+GL+AV+KRP MYIG   G  GL+H+IYE++DNA+DE L GY D I
Sbjct: 1   MAKTQYNADSITVLEGLEAVRKRPGMYIGSV-GTKGLNHLIYEIVDNAVDEHLAGYCDQI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DGSCTV D GRGIP ++H + G+SA  V+++ LHAGGKF+  +YK SGGLHGVG
Sbjct: 60  WVTLEADGSCTVKDAGRGIPVEMHSK-GVSAERVVLSTLHAGGKFDNDAYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSS 179
            SVVNALS+ +K+++ + G I+   +  GI         L   G    +TGTE+ FLP  
Sbjct: 119 SSVVNALSAHMKIKVYKNGLIHYDEYERGIPTVELVDGLLPTLGKTK-ETGTEINFLPDG 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    F  D L+ RL E ++LN S++I   +KR  E   +      GI A+V  L+  
Sbjct: 178 EIFEKTRFKADWLKSRLHETAYLNPSLKIIYRNKRQGEEETVVYHEPDGIIAYVRELNAG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ +   P+  +G+ D + I++A+++ D + EN+L F NNI  ++GGTHL+G ++  T+ 
Sbjct: 238 KEAVH-DPVYFKGTMDKVEIEVALQFVDTFEENILGFCNNIFTQEGGTHLAGFKTRFTQM 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY  +    K+   +  G D R G T+V+++K PDP F  QTK KL S++    V + 
Sbjct: 297 INSYARELGILKEKDANFTGADTRNGLTAVVAVKHPDPIFEGQTKTKLASADATKAVFTV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             D L  + + +    K ++     ++ +R A  +A+     K      S  GKLA+C  
Sbjct: 357 TGDELQRYFDRNLEVLKAVIGCAEKSAKIRKAEEKAKTNMLSKSRFSFDS-NGKLANCES 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R+ +K E+F+VEGDSAGGSAK  R+R+ QAILP+RGKILNVE+A  DK+L++ EI T+I 
Sbjct: 416 REAEKCEIFIVEGDSAGGSAKTARNRQYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
             G G  +   + FDI+KLRYHKII+MTDADVDG+HI TLLLTF +R MP LI+NG ++I
Sbjct: 476 TFGCGFSEGYGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFLYRFMPELIYNGHVFI 535

Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
             PPL+  I +    QY+ DE+ LE Y    +    ++ +     + ++      +D   
Sbjct: 536 AMPPLFKVIPKRGEEQYLYDEKELERYRRTHTGEFTLQRYKGLGEMDAEQLWETTLDPER 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           ++ K ++           E  + S V         +   A 
Sbjct: 596 RVLKQVEIEDARMASEITEMLMGSDVLPRRQFIYEHADEAE 636



 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 105/269 (39%), Gaps = 17/269 (6%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +   ++  + E++  + L     S +      +           FI +        K
Sbjct: 378 CAEKSAKIRKAE-EKAKTNMLSKSRFSFDSNGKLANCESREAEKCEIFIVEGDSAGGSAK 436

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +  +   +   + N E      V   +++   +N       + +    + S +
Sbjct: 437 TARNRQYQAIL--PIRGKILNVEKASMDKVLANAEIKTMINTFGCGFSEGYGNDFDISKL 494

Query: 663 LVKRIAR----GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKIT 717
              +I       V    +      F +    + I++  +      +  +I   G++  + 
Sbjct: 495 RYHKIILMTDADVDGSHIDTLLLTFLYRFMPELIYNGHVFIAMPPLFKVIPKRGEEQYLY 554

Query: 718 GPCSLLDTIFSIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
               L        R+      ++QRYKGLGEM+A QLWETTL+P+ R L +V+I DA  A
Sbjct: 555 DEKEL-----ERYRRTHTGEFTLQRYKGLGEMDAEQLWETTLDPERRVLKQVEIEDARMA 609

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALD 802
            ++   LMG +V PRR+FI E++  + +D
Sbjct: 610 SEITEMLMGSDVLPRRQFIYEHADEAEID 638


>gi|298345811|ref|YP_003718498.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|304390485|ref|ZP_07372438.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298235872|gb|ADI67004.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|304326241|gb|EFL93486.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 686

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 261/604 (43%), Positives = 364/604 (60%), Gaps = 31/604 (5%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
                 YDA  I++L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DESL GY D 
Sbjct: 17  EKPEEHYDASDIRVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDESLAGYCDH 75

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VTL  DG   V+DNGRGIP   H  E     EV+MT LHAGGKF   SY VSGGLHGV
Sbjct: 76  IEVTLQADGGVRVADNGRGIPVAEHPSEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 135

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G+SVVNALS+ +   +KR+G  + + F N G +  PL   G    +TGT   F P  +IF
Sbjct: 136 GISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRR-GEPTEETGTVQVFYPDPEIF 194

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREI 221
              +F+Y+TL+ R ++++FLN  ++I+L D+R                         R +
Sbjct: 195 ETVEFDYETLRTRFQQMAFLNKGLRITLTDERPNVTAEGDFVTGDQDGDADSPKVGRRSV 254

Query: 222 TMFYKGGIEAFVSYLDRH------KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
           +  Y+ G+  +V +++         + ++     ++   + +++++A++W   Y E++  
Sbjct: 255 SYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEIALQWTSAYSESIYT 314

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + N I   +GGTH  G R+ALT  +     +    K    ++ GDDCREG T+V+S+K+ 
Sbjct: 315 YANTINTTEGGTHEEGFRAALTSLMNKVGREKGFIKDKDENLSGDDCREGLTAVISVKIR 374

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL ++E R+ V+  V   L  W + HP E K I+ K   A   R+AAR+A
Sbjct: 375 NPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAKAQSAQQARNAARKA 434

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RD TRRK  LD  S+PGKL DCS RD    E+FLVEGDSAGGSA  GR   +QAILPLRG
Sbjct: 435 RDATRRKTALDSFSMPGKLRDCSSRDASNCEIFLVEGDSAGGSAVAGRDPAHQAILPLRG 494

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR D+ L ++EI +LITA GTGIG+D FD++KLRY+KI++M DADVDG HI T
Sbjct: 495 KILNVEKARLDRALDNKEIQSLITAFGTGIGED-FDLSKLRYYKIVLMADADVDGQHITT 553

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLT  FR M  LI NG +++  PPLY +            +  +D +++  L     + 
Sbjct: 554 LLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDKMVSLGLDSGARMP 613

Query: 576 CDSK 579
            +  
Sbjct: 614 KEGG 617



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A +LWETT++P  R L +V + +A+ AD++FS LMG++V  RR FIQ N
Sbjct: 618 IQRYKGLGEMSAQELWETTMDPSARLLKQVTMDEAASADEVFSLLMGEDVSSRRAFIQRN 677

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 678 AQDVRFLDI 686


>gi|160938079|ref|ZP_02085436.1| hypothetical protein CLOBOL_02973 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439073|gb|EDP16828.1| hypothetical protein CLOBOL_02973 [Clostridium bolteae ATCC
           BAA-613]
          Length = 639

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 257/622 (41%), Positives = 369/622 (59%), Gaps = 14/622 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y+ADSI +L+GL+AV+KRP MYIG   G  GL+H+IYE++DNA+DE L G+   +
Sbjct: 1   MAKEQYNADSITVLEGLEAVRKRPGMYIGGV-GSKGLNHLIYEIIDNAVDEHLAGFCSSV 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DGSCTV DNGRGIP  LHK+ GISAA ++++ LHAGGKF+  +YK SGGLHGVG
Sbjct: 60  WVTLEADGSCTVRDNGRGIPVGLHKK-GISAARIVLSTLHAGGKFDNDAYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSS 179
            SVVNALS+ + L++ R+G IY   +  G     L      V G    +TGT + FLP  
Sbjct: 119 SSVVNALSAHMDLKVYRDGCIYHDEYEKGRPVIKLENGLLPVIGKT-RETGTCINFLPDG 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           DIF    F  + L+ RL E ++LN ++ +   +KR  E  ++      GI A+V  L+  
Sbjct: 178 DIFEKTRFKAEWLKSRLHETAYLNPNLTLYYENKRPGEGEKVAFHEPEGIVAYVRELNSG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+   PI  +G+ D + ++ A+++ D + EN+L F NNI  ++GGTHL+G ++  T  
Sbjct: 238 KTPVH-DPIYFKGTVDKVEVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKTKFTAL 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY  +    K    +  G D R G T+V+++K PDP F  QTK KL S++    V + 
Sbjct: 297 INSYAREIGILKDKDTNFTGADTRNGMTAVIAVKHPDPIFEGQTKTKLASADATKAVFTV 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             D L  + + +    K ++     ++ +R A  +A+     K      S  GKLA+C  
Sbjct: 357 TGDELQLYFDRNVEVLKGVIGCAEKSAKIRRAEEKAKTNMLTKSKFSFDS-NGKLANCES 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RD  + E+F+VEGDSAGGSAK  R+R+ QAILP+RGKILNVE+A  DK+L++ EI T+I 
Sbjct: 416 RDASRCEIFIVEGDSAGGSAKTARNRQYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
             G G  +   + FDI KLRY KII+MTDADVDG+HI TLLLTF +R MP LI++G +YI
Sbjct: 476 TFGCGFSEGYGNDFDITKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYI 535

Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
             PPL+  I +    QY+ DE+ LE Y    +    ++ +     + ++      +D   
Sbjct: 536 AMPPLFKVIPKRGEEQYLYDEKELERYRKTHTGDFTLQRYKGLGEMDAEQLWETTLDPER 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
           ++ K ++           E  +
Sbjct: 596 RVLKRVEIEDARMATEITEMLM 617



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 14/191 (7%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN----NSDILVKRIARGVQEQFV 676
           + N E      V   +++   +N       + +    +      D ++      V    +
Sbjct: 453 ILNVEKASMDKVLANAEIKTMINTFGCGFSEGYGNDFDITKLRYDKIILMTDADVDGSHI 512

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIGRK--- 732
                 F +    + I+   +      +  +I   G++  +     L        RK   
Sbjct: 513 DTLLLTFLYRFMPELIYDGHVYIAMPPLFKVIPKRGEEQYLYDEKEL-----ERYRKTHT 567

Query: 733 -GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
              ++QRYKGLGEM+A QLWETTL+P+ R L RV+I DA  A ++   LMG EV PRR+F
Sbjct: 568 GDFTLQRYKGLGEMDAEQLWETTLDPERRVLKRVEIEDARMATEITEMLMGTEVGPRRQF 627

Query: 792 IQENSLPSALD 802
           I E++  + +D
Sbjct: 628 IYEHADEAEID 638


>gi|313112547|ref|ZP_07798211.1| DNA gyrase, B subunit [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625129|gb|EFQ08420.1| DNA gyrase, B subunit [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 572

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 264/564 (46%), Positives = 363/564 (64%), Gaps = 21/564 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++   +  Y+A  IQ+LKGL+AV+KRP MYIG T GE GLHH++YE++DNAIDE+L GY 
Sbjct: 11  AETATDHEYNASEIQVLKGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAIDEALAGYC 69

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119
           D I V +  D    V+DNGRGIP D+  + G+ A  V+ T LHAGGKF      YKV+GG
Sbjct: 70  DHIEVKILKDNIIQVTDNGRGIPVDIQADTGLPAVTVVYTILHAGGKFGGENSGYKVAGG 129

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPS 178
           LHGVG SVVNA S WL + ++R+G+ YE +F  G  D PL   G+ A   TGT VTF P 
Sbjct: 130 LHGVGASVVNACSEWLTVNVRRDGHEYEQTFRRGDPDGPLKCIGTVADGVTGTRVTFKPD 189

Query: 179 SDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------EPREITMF 224
            ++F     +++DTL+ RLRE SFLN+ V+I+L D+R                 R   M 
Sbjct: 190 PEMFRDTTVYDFDTLEKRLREESFLNAGVKITLTDEREMYTPVLEDGKEGEPCYRTEVMC 249

Query: 225 YKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y+GGI++FV+Y    R    L  + I ++G  D    ++A+++N  Y+E +L F NN+  
Sbjct: 250 YEGGIKSFVTYLGEKRKLDVLHPNVIYLKGQTDRGMAEIALQYNSSYNELLLSFANNVNT 309

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            DGGTH  G +++LTR    Y       K    ++ G D REG   V+S+K+ +  F  Q
Sbjct: 310 PDGGTHEEGFKNSLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQEAEFEGQ 369

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++E+R++V + V   L  + EE+P  AK I +K   A+  R AA++AR+L RRK
Sbjct: 370 TKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKARELVRRK 429

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+ + +PGKLADC E+DP ++E+F+VEGDSAGGSAK GR    QAILPL GK+LNVE+
Sbjct: 430 SALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWGKMLNVEK 489

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR DK+  + ++  ++ ALG GIG D FDI+KLRY K+ IM DADVDG+HI TL+LTFFF
Sbjct: 490 ARADKIYGNDKLMPVVLALGCGIG-DEFDISKLRYDKVFIMADADVDGSHICTLMLTFFF 548

Query: 523 RQMPSLIHNGFLYIIKPPLYGITR 546
           R M  LI  G +Y+ +PPL+ + +
Sbjct: 549 RYMRPLIEQGHVYVAQPPLFKVQK 572


>gi|30263545|ref|NP_845922.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Ames]
 gi|47778193|ref|YP_020292.2| DNA topoisomerase IV subunit B [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186397|ref|YP_029649.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Sterne]
 gi|65320876|ref|ZP_00393835.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bacillus anthracis str. A2012]
 gi|165871023|ref|ZP_02215674.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0488]
 gi|167636468|ref|ZP_02394766.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0442]
 gi|167640560|ref|ZP_02398822.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0193]
 gi|170688415|ref|ZP_02879623.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0465]
 gi|170708114|ref|ZP_02898561.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0389]
 gi|177652461|ref|ZP_02934928.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0174]
 gi|190565061|ref|ZP_03017982.1| DNA topoisomerase IV, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227813571|ref|YP_002813580.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. CDC 684]
 gi|228916227|ref|ZP_04079797.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228934869|ref|ZP_04097700.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229604304|ref|YP_002867790.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0248]
 gi|254686164|ref|ZP_05150023.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. CNEVA-9066]
 gi|254726069|ref|ZP_05187851.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. A1055]
 gi|254738637|ref|ZP_05196340.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744805|ref|ZP_05202483.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Kruger B]
 gi|254752955|ref|ZP_05204991.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Vollum]
 gi|254759227|ref|ZP_05211253.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Australia
           94]
 gi|301055084|ref|YP_003793295.1| DNA topoisomerase IV subunit B [Bacillus anthracis CI]
 gi|30258180|gb|AAP27408.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. Ames]
 gi|47551898|gb|AAT32767.2| DNA topoisomerase IV, B subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180324|gb|AAT55700.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. Sterne]
 gi|164713234|gb|EDR18760.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0488]
 gi|167511428|gb|EDR86812.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0193]
 gi|167528127|gb|EDR90919.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0442]
 gi|170126922|gb|EDS95802.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0389]
 gi|170667585|gb|EDT18340.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0465]
 gi|172082135|gb|EDT67202.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0174]
 gi|190564378|gb|EDV18342.1| DNA topoisomerase IV, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227007627|gb|ACP17370.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. CDC 684]
 gi|228824769|gb|EEM70570.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228843425|gb|EEM88503.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268712|gb|ACQ50349.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0248]
 gi|300377253|gb|ADK06157.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis
           str. CI]
          Length = 654

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 267/663 (40%), Positives = 401/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD++     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|269797076|ref|YP_003310976.1| DNA gyrase subunit beta [Veillonella parvula DSM 2008]
 gi|269093705|gb|ACZ23696.1| DNA gyrase, B subunit [Veillonella parvula DSM 2008]
          Length = 633

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 306/585 (52%), Positives = 415/585 (70%), Gaps = 4/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A +IQ+L+GLDAV+KRP MYIG T    GLHH++YEV+DN++DE+L GYA  I
Sbjct: 1   MPEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSVDEALAGYATHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF    YKVSGGLHGVG
Sbjct: 60  EVSINPDNSVTVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS W K+++ + G + E+SF  G   + L   G A   TGT V F P ++IF  
Sbjct: 119 ISVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAS-GTGTTVIFKPDAEIFET 177

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++DTL+ RL+EL+FLN  ++I+L D R  EPR  +  Y+GG+ +F+++L+ +K+ + 
Sbjct: 178 TVFSFDTLKMRLQELAFLNKGLRITLSDLRLEEPRVESFHYEGGLISFITFLNENKEAIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            + I I+ ++D++ +D+A+++ND Y EN+L F NNI   DGGTHLSG R+ALTR +  Y 
Sbjct: 238 PTVINIENTKDDVVVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYG 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            KS   K+++ ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEV+ + +  V +GL
Sbjct: 298 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + EEHP +AK I++K   AS  R+AAR+ARDLTRRK  L+++SLPGKLADCSE+D   
Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG
Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY I
Sbjct: 478 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +GKS  YV  +  L   L                G ++   L  
Sbjct: 537 KKGKSHWYVYSDAELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWE 581



 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 6/203 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +        +   + N E  +   +   +++ + +          +  + +  +
Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 490

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720
            ++      V    +      F +      +    I       L  I  G     +    
Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 549

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            L   +  +GR G ++QRYKGLGEMN  QLWETT+NP+ R++L+V + D+ +AD +F+ L
Sbjct: 550 ELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVL 609

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGD+VEPRR+FI++N+     LD
Sbjct: 610 MGDKVEPRRKFIEDNAKYVRNLD 632


>gi|294794197|ref|ZP_06759333.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44]
 gi|294454527|gb|EFG22900.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44]
          Length = 645

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 306/585 (52%), Positives = 415/585 (70%), Gaps = 4/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A +IQ+L+GLDAV+KRP MYIG T    GLHH++YEV+DN++DE+L GYA  I
Sbjct: 13  MPEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSVDEALAGYATHI 71

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF    YKVSGGLHGVG
Sbjct: 72  EVSINPDNSVTVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 130

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS W K+++ + G + E+SF  G   + L   G A   TGT V F P ++IF  
Sbjct: 131 ISVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAE-GTGTTVIFKPDAEIFET 189

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++DTL+ RL+EL+FLN  ++I+L D R  EPR  +  Y+GG+ +F+++L+ +K+ + 
Sbjct: 190 TVFSFDTLKMRLQELAFLNKGLRITLSDLRLEEPRVESFHYEGGLVSFITFLNENKEAIN 249

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            + I I+ ++D++ +D+A+++ND Y EN+L F NNI   DGGTHLSG R+ALTR +  Y 
Sbjct: 250 PTVINIENTKDDVVVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYG 309

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            KS   K+++ ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEV+ + +  V +GL
Sbjct: 310 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGL 369

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + EEHP +AK I++K   AS  R+AAR+ARDLTRRK  L+++SLPGKLADCSE+D   
Sbjct: 370 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 429

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG
Sbjct: 430 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 489

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY I
Sbjct: 490 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 548

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +GKS  YV  +  L   L                G ++   L  
Sbjct: 549 KKGKSHWYVYSDAELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWE 593



 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 6/203 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +        +   + N E  +   +   +++ + +          +  + +  +
Sbjct: 446 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 502

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720
            ++      V    +      F +      +    I       L  I  G     +    
Sbjct: 503 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 561

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            L   +  +GR G ++QRYKGLGEMN  QLWETT+NPD R++L+V + D+ +AD +F+ L
Sbjct: 562 ELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWETTMNPDNRTILQVSLEDSIEADKIFTVL 621

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGD+VEPRR+FI++N+     LD
Sbjct: 622 MGDKVEPRRKFIEDNAKYVRNLD 644


>gi|270293047|ref|ZP_06199258.1| DNA gyrase subunit B [Streptococcus sp. M143]
 gi|270279026|gb|EFA24872.1| DNA gyrase subunit B [Streptococcus sp. M143]
          Length = 648

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLRISITDKREGLEQSKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         SK  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L    S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|295115103|emb|CBL35950.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SM4/1]
          Length = 639

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 257/622 (41%), Positives = 374/622 (60%), Gaps = 14/622 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + YDADSI +L+GL+AV+KRP MYIG   G  GL+H+IYE++DN++DE L G    I
Sbjct: 1   MGKAQYDADSITVLEGLEAVRKRPGMYIGGV-GTKGLNHLIYEIVDNSVDEHLAGECTSI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DGSCTV DNGRGIP ++HK+ G+SA  V+++ LHAGGKF+  +YK SGGLHGVG
Sbjct: 60  WVTLEADGSCTVRDNGRGIPVEMHKK-GVSAERVVLSTLHAGGKFDNSAYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSS 179
            SVVNALS  L ++I + G I+  ++  GI         L V G    +TGT + FLP  
Sbjct: 119 SSVVNALSEHLDIKIYKNGQIHHDAYERGIPVVELVDGLLPVIGKTK-ETGTCINFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    F  + L+ RL E ++LN ++ I   ++R+ E  +I      GI A+V  ++  
Sbjct: 178 TIFEKTKFKAEWLKSRLHETAYLNPALTIYYENRRAGEEEKIVYSEPDGIIAYVKEINAG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+   PI  +GS + I ++ A+++ D + EN+L F NNI  ++GGTHL+G ++  T  
Sbjct: 238 KTPVH-EPIYFKGSMEGIEVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKTKFTML 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY  +    K+   +  G D R G T+V++IK PDP F  QTK KL S++    V + 
Sbjct: 297 INSYARELGILKEKDSNFTGADTRNGMTAVIAIKHPDPIFEGQTKTKLASADATKAVFTL 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + L  + + +    K ++     ++ +R A  +A+     K      S  GKL++C  
Sbjct: 357 AGEELQRFFDRNLETLKAVIGCAEKSAKIRKAEEKAKTNMLTKSRFSFDS-NGKLSNCES 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RD +K E+F+VEGDSAGGSAK GR+R+ QAILP+RGKILNVE+A  DK+L++ EI T+I 
Sbjct: 416 RDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           A G G  +   + FDI+KLRY+KII+MTDADVDG+HI TLLLTF +R MP LI  G +YI
Sbjct: 476 AFGCGFSEGYGNDFDISKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPDLITEGHVYI 535

Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
             PPL+  I +    QY+ DE++LE Y    +    ++ +     + ++      ++   
Sbjct: 536 AMPPLFKVIPKKGEEQYLYDEKALEKYKKTHAGGFTLQRYKGLGEMDAEQLWETTLNPEN 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
           ++ K ++           E  +
Sbjct: 596 RVLKQVEIEDARMASEITEMLM 617



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 18/193 (9%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      V   +++   +N       + +    + S +   +I   +     ++GS
Sbjct: 453 ILNVEKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDISKLRYNKII--LMTDADVDGS 510

Query: 681 SIFSFGSKYK-RIFSNRIEENYLTIL------SLICNGDKIKITGPCSLLDTIFSIGRK- 732
            I +    +  R   + I E ++ I        +   G++  +       +      +K 
Sbjct: 511 HIDTLLLTFLYRFMPDLITEGHVYIAMPPLFKVIPKKGEEQYLYD-----EKALEKYKKT 565

Query: 733 ---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
              G ++QRYKGLGEM+A QLWETTLNP+ R L +V+I DA  A ++   LMG +V PRR
Sbjct: 566 HAGGFTLQRYKGLGEMDAEQLWETTLNPENRVLKQVEIEDARMASEITEMLMGSDVPPRR 625

Query: 790 EFIQENSLPSALD 802
           +FI +++  + +D
Sbjct: 626 QFIYDHAEEAEID 638


>gi|49478289|ref|YP_037677.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141939|ref|YP_084890.1| DNA topoisomerase IV subunit B [Bacillus cereus E33L]
 gi|196034146|ref|ZP_03101556.1| DNA topoisomerase IV, B subunit [Bacillus cereus W]
 gi|196038513|ref|ZP_03105822.1| DNA topoisomerase IV, B subunit [Bacillus cereus NVH0597-99]
 gi|218904724|ref|YP_002452558.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH820]
 gi|228928649|ref|ZP_04091685.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947212|ref|ZP_04109506.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986686|ref|ZP_04146816.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229092562|ref|ZP_04223718.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-42]
 gi|229123114|ref|ZP_04252321.1| DNA topoisomerase 4 subunit B [Bacillus cereus 95/8201]
 gi|229157170|ref|ZP_04285250.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 4342]
 gi|49329845|gb|AAT60491.1| topoisomerase IV, subunit B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975408|gb|AAU16958.1| topoisomerase IV, subunit B [Bacillus cereus E33L]
 gi|195993220|gb|EDX57178.1| DNA topoisomerase IV, B subunit [Bacillus cereus W]
 gi|196030921|gb|EDX69519.1| DNA topoisomerase IV, B subunit [Bacillus cereus NVH0597-99]
 gi|218535726|gb|ACK88124.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH820]
 gi|228626234|gb|EEK82981.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 4342]
 gi|228660408|gb|EEL16041.1| DNA topoisomerase 4 subunit B [Bacillus cereus 95/8201]
 gi|228690849|gb|EEL44624.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-42]
 gi|228773017|gb|EEM21453.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812459|gb|EEM58786.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228830968|gb|EEM76569.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 654

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 267/663 (40%), Positives = 401/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD++     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|47570276|ref|ZP_00240926.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9241]
 gi|47553067|gb|EAL11468.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9241]
          Length = 654

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 267/663 (40%), Positives = 401/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDAIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|331700400|ref|YP_004397359.1| DNA gyrase subunit B [Lactobacillus buchneri NRRL B-30929]
 gi|329127743|gb|AEB72296.1| DNA gyrase, B subunit [Lactobacillus buchneri NRRL B-30929]
          Length = 647

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 288/652 (44%), Positives = 413/652 (63%), Gaps = 15/652 (2%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D  +        YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE
Sbjct: 1   MADEKETKKELAHEYDASQIQVLEGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIVDNGIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  ITVT+  D S TV+D+GRGIP D+ K+ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATKITVTVEKDNSITVTDDGRGIPVDIQKKTGKPALETVFTILHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVT 174
           VSGGLHGVG SVVNALSS L + + R+G +Y M F  G +   + V    + +  GT+V 
Sbjct: 120 VSGGLHGVGASVVNALSSELDVEVTRDGKVYYMDFSRGHVKTKMKVVREVSDDLHGTKVH 179

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           FLP  DIF     ++   L  RLREL+FLN  ++I ++D R  +P E    Y+GGI+ +V
Sbjct: 180 FLPDPDIFRETTTYDIKVLTARLRELAFLNKGLRIVVLDLRPEKPTEQDFMYEGGIKHYV 239

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YLD  K+ L+  PI ++G  + I++++A+++ + YH  ++ FTNNI   +GGTH  G +
Sbjct: 240 EYLDNSKETLLDEPIYVEGVMNGITVEVAIQYTNDYHNTLMTFTNNIHTYEGGTHEEGFK 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR I  Y  K+   K ++ ++ G+D REG T+V+SIK PDP+F  QTK KL +S+ R
Sbjct: 300 RALTRVINDYARKNKLLKDNEPNLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDAR 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           +V +   +D  + +L E+P  A+ IV + + AS  R AA+RAR++TR+K  L+I++LPGK
Sbjct: 360 TVTDRIFSDHFTKFLMENPKMARKIVDRGMLASKARSAAKRAREVTRKKSGLEISNLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LAD + +DPK SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+++E
Sbjct: 420 LADNTSKDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANEE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +L TA+GTG G+D FD++K+ YHK+IIMTDADVDGAHI+TLLLT  +R M  LI  GF
Sbjct: 480 IRSLFTAMGTGFGED-FDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGF 538

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFID 592
           +Y+ +PPLY + +GK  +Y+  ++ L  +L     S + +       G +    L +   
Sbjct: 539 VYVAQPPLYQVRQGKMSRYIDSDDDLNAFLGTLQPSPKPVIQRYKGLGEMDAEQLWDT-- 596

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
               ++   +           E   +  +   +  +     +        N 
Sbjct: 597 ---TMNPENRHLLRVESSDAAEADKVFSMLMGDKVEPRREFIEDNATFVENL 645



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 58/69 (84%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLW+TT+NP+ R LLRV+ +DA++AD +FS LMGD+VEPRREFI++N
Sbjct: 579 IQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEADKVFSMLMGDKVEPRREFIEDN 638

Query: 796 SLPS-ALDI 803
           +     LD+
Sbjct: 639 ATFVENLDV 647


>gi|227541366|ref|ZP_03971415.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182917|gb|EEI63889.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 691

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 289/665 (43%), Positives = 388/665 (58%), Gaps = 54/665 (8%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+++ QN       YDA SI +L+GL+AV+KRP MYIG T G  GLHH+++EV+DN+IDE
Sbjct: 1   MAESQQNLSPEHHDYDATSITVLEGLEAVRKRPGMYIGST-GRRGLHHLVWEVVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD + V L+ DGS  V+DNGRGIP ++H + G    EV+MT+LHAGGKFN  SYK
Sbjct: 60  ALAGFADKVDVVLHEDGSVEVTDNGRGIPVEMH-QTGRPTVEVVMTQLHAGGKFNNDSYK 118

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG+SVVNALS+ ++  IKR+G  +   F N + D  L   G A   TGT + F
Sbjct: 119 VSGGLHGVGISVVNALSTRVEADIKRDGYHWYQRFNNQVPD-DLEKGGKA-RGTGTRIRF 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------- 222
            P ++IF   +FNY T+  RL++++FLN  V I L DKR     E               
Sbjct: 177 WPDAEIFETVEFNYKTISDRLQQMAFLNKGVYIKLTDKRKHIIAEEEKPSLEADESLLEA 236

Query: 223 ------------------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
                                           Y  G+  +V +L++ K  L  + +  Q 
Sbjct: 237 DSLSLDEVDEKLAEKPQAEEPEIPSERSVVFHYPDGLIDYVKFLNKKKTALHPTIVGFQD 296

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
           S D++++++A++WN  Y ENV  F N I   +GGTH  G R+ALT  +  Y       K+
Sbjct: 297 SEDDLALEVALQWNTSYKENVFTFANTIATVEGGTHEEGFRAALTTIMNKYARDHKLMKE 356

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               + GDDCREG ++V+S+K+ DP+F  QTK KL ++ V+S V+  VN  L+ W E +P
Sbjct: 357 KDPKLTGDDCREGLSAVVSVKVGDPQFEGQTKTKLGNTNVKSFVQRVVNTHLTHWFEANP 416

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAKIIV+K   ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP+KSEL++VEG
Sbjct: 417 AEAKIIVQKASSSAQARLAARKARELVRRKSPTDMGGLPGKLADCRSKDPEKSELYIVEG 476

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSAGGSAK GR    QAILPLRGKILNVE+AR D+   + EI  +ITALGTG+  D FDI
Sbjct: 477 DSAGGSAKAGRDSMFQAILPLRGKILNVEKARLDRAFKNAEIQAIITALGTGV-HDEFDI 535

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQ 551
           +KLRYHKI++M DADVDG HI TLLLT  FR MP+LI  G +Y+  PPLY +   K    
Sbjct: 536 SKLRYHKIVLMADADVDGQHIATLLLTLLFRFMPALIEEGHVYLANPPLYKLKWQKGDPG 595

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           +   ++  +D L     +       D           N  +                D  
Sbjct: 596 FAYSDQERDDLLAEGLEAGRKINTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRVDLE 655

Query: 612 FIEQA 616
             E+A
Sbjct: 656 DAERA 660



 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/88 (55%), Positives = 60/88 (68%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
            LL      GRK I+    +QRYKGLGEMNAS+LWETTL+PD R+L RV + DA +AD+L
Sbjct: 605 DLLAEGLEAGRK-INTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRVDLEDAERADEL 663

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI  N+     LD+
Sbjct: 664 FSILMGDDVVARRTFITRNAKDVRFLDV 691


>gi|282848760|ref|ZP_06258155.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745]
 gi|282581546|gb|EFB86934.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745]
          Length = 633

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 307/585 (52%), Positives = 416/585 (71%), Gaps = 4/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A +IQ+L+GLDAV+KRP MYIG T    GLHH++YEV+DN++DE+L GYA  I
Sbjct: 1   MPEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSVDEALAGYATHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF    YKVSGGLHGVG
Sbjct: 60  EVSINPDNSVTVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS W K+++ + G + E+SF  G   + L   G A   TGT V F P ++IF  
Sbjct: 119 ISVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAE-GTGTTVIFKPDAEIFET 177

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++DTL+ RL+EL+FLN  ++I+L D R  EPR  +  Y+GG+ +F+++L+ +K+ + 
Sbjct: 178 TVFSFDTLKMRLQELAFLNKGLRITLSDLRLEEPRVESFHYEGGLVSFITFLNENKEAIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            + I I+ ++D++ +D+A+++ND Y EN+L F NNI   DGGTHLSG R+ALTR +  Y 
Sbjct: 238 PTVINIENTKDDVVVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYG 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            KS   K+++ ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEV+ + +  V +GL
Sbjct: 298 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + EEHP +AK I++K   AS  R+AAR+ARDLTRRK  L+++SLPGKLADCSE+D   
Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG
Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M  LI +G +YI +PPLY I
Sbjct: 478 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMRQLIEDGHVYIAQPPLYQI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +GKS  YV  +  L   L                G ++   L  
Sbjct: 537 KKGKSHWYVYSDAELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWE 581



 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 6/203 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +        +   + N E  +   +   +++ + +          +  + +  +
Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 490

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720
            ++      V    +      F +    + I    +       L  I  G     +    
Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMRQLIEDGHVY-IAQPPLYQIKKGKSHWYVYSDA 549

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            L   +  +GR G ++QRYKGLGEMN  QLWETT+NP+ R++L+V +  A +AD +F+ L
Sbjct: 550 ELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWETTMNPENRTILQVSLDGAIEADKIFTVL 609

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGD+VEPRR+FI++N+     LD
Sbjct: 610 MGDKVEPRRKFIEDNAKYVRNLD 632


>gi|322376370|ref|ZP_08050863.1| DNA gyrase, B subunit [Streptococcus sp. M334]
 gi|321282177|gb|EFX59184.1| DNA gyrase, B subunit [Streptococcus sp. M334]
          Length = 648

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 408/626 (65%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A+ I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFANHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLRISITDKREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  + ++PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|69246710|ref|ZP_00604078.1| DNA gyrase, B subunit [Enterococcus faecium DO]
 gi|227550644|ref|ZP_03980693.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257878650|ref|ZP_05658303.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933]
 gi|257881316|ref|ZP_05660969.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502]
 gi|257888091|ref|ZP_05667744.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733]
 gi|257890533|ref|ZP_05670186.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410]
 gi|257893108|ref|ZP_05672761.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408]
 gi|257896291|ref|ZP_05675944.1| DNA gyrase B subunit [Enterococcus faecium Com12]
 gi|257899275|ref|ZP_05678928.1| DNA gyrase B subunit [Enterococcus faecium Com15]
 gi|258615266|ref|ZP_05713036.1| DNA gyrase subunit B [Enterococcus faecium DO]
 gi|260558231|ref|ZP_05830427.1| DNA gyrase B subunit [Enterococcus faecium C68]
 gi|261206921|ref|ZP_05921610.1| DNA gyrase B subunit [Enterococcus faecium TC 6]
 gi|289566502|ref|ZP_06446926.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF]
 gi|293379372|ref|ZP_06625516.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1]
 gi|293553551|ref|ZP_06674178.1| DNA gyrase, B subunit [Enterococcus faecium E1039]
 gi|293563255|ref|ZP_06677707.1| DNA gyrase, B subunit [Enterococcus faecium E1162]
 gi|293569155|ref|ZP_06680461.1| DNA gyrase, B subunit [Enterococcus faecium E1071]
 gi|293572722|ref|ZP_06683686.1| DNA gyrase, B subunit [Enterococcus faecium E980]
 gi|294616655|ref|ZP_06696426.1| DNA gyrase, B subunit [Enterococcus faecium E1636]
 gi|294619749|ref|ZP_06699154.1| DNA gyrase, B subunit [Enterococcus faecium E1679]
 gi|294623763|ref|ZP_06702591.1| DNA gyrase, B subunit [Enterococcus faecium U0317]
 gi|314940127|ref|ZP_07847307.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04]
 gi|314943042|ref|ZP_07849846.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C]
 gi|314948160|ref|ZP_07851556.1| DNA gyrase, B subunit [Enterococcus faecium TX0082]
 gi|314953426|ref|ZP_07856344.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A]
 gi|314993835|ref|ZP_07859171.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B]
 gi|314998140|ref|ZP_07863022.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01]
 gi|68195124|gb|EAN09583.1| DNA gyrase, B subunit [Enterococcus faecium DO]
 gi|227180223|gb|EEI61195.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257812878|gb|EEV41636.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933]
 gi|257816974|gb|EEV44302.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502]
 gi|257824145|gb|EEV51077.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733]
 gi|257826893|gb|EEV53519.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410]
 gi|257829487|gb|EEV56094.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408]
 gi|257832856|gb|EEV59277.1| DNA gyrase B subunit [Enterococcus faecium Com12]
 gi|257837187|gb|EEV62261.1| DNA gyrase B subunit [Enterococcus faecium Com15]
 gi|260075405|gb|EEW63711.1| DNA gyrase B subunit [Enterococcus faecium C68]
 gi|260078549|gb|EEW66251.1| DNA gyrase B subunit [Enterococcus faecium TC 6]
 gi|289161711|gb|EFD09587.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF]
 gi|291588124|gb|EFF19966.1| DNA gyrase, B subunit [Enterococcus faecium E1071]
 gi|291590475|gb|EFF22213.1| DNA gyrase, B subunit [Enterococcus faecium E1636]
 gi|291594019|gb|EFF25488.1| DNA gyrase, B subunit [Enterococcus faecium E1679]
 gi|291596717|gb|EFF27940.1| DNA gyrase, B subunit [Enterococcus faecium U0317]
 gi|291602306|gb|EFF32531.1| DNA gyrase, B subunit [Enterococcus faecium E1039]
 gi|291604794|gb|EFF34276.1| DNA gyrase, B subunit [Enterococcus faecium E1162]
 gi|291607214|gb|EFF36572.1| DNA gyrase, B subunit [Enterococcus faecium E980]
 gi|292641895|gb|EFF60061.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1]
 gi|313587852|gb|EFR66697.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01]
 gi|313591726|gb|EFR70571.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B]
 gi|313594529|gb|EFR73374.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A]
 gi|313598242|gb|EFR77087.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C]
 gi|313640632|gb|EFS05212.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04]
 gi|313645414|gb|EFS09994.1| DNA gyrase, B subunit [Enterococcus faecium TX0082]
          Length = 648

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 291/627 (46%), Positives = 415/627 (66%), Gaps = 12/627 (1%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++          YDA  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE 
Sbjct: 1   MTEERSLVERAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDEV 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFATKIHVIIEKDNSITVIDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +++ +EGN+Y   +  G + + L +     +  GT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVKVYKEGNVYYQEYRRGAVVDDLKII-EQTDRHGTTVHFT 178

Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+    F++  L  R+REL+FLN  ++IS+ DKR  EP      Y GGI+++V Y
Sbjct: 179 PDPEIFTETTEFDFSKLATRIRELAFLNRGMRISIEDKREEEPVINEYHYDGGIKSYVEY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+ +K  +   P+ ++G + +I+++++M++ DGYH N++ F NNI   +GGTH SG ++A
Sbjct: 239 LNANKTVIFPEPVYLEGEQQDIAVEVSMQYTDGYHSNIMSFANNIHTYEGGTHESGFKTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y  K    K++  ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR+V
Sbjct: 299 LTRVINDYARKQKLMKENDDNLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTV 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
            +   ++    +L E+P   + IV+K L AS  R AA+RAR++TRRKG L+I++LPGKLA
Sbjct: 359 TDRLFSEHFMKFLLENPSVGRQIVEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+K ELF+VEGDSAGGSAKQGR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPEKCELFIVEGDSAGGSAKQGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G+D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++Y
Sbjct: 479 SLFTAMGTGFGED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLYG+ +GK++ YV+  ++ E+ L          L    K  + +      +DD  
Sbjct: 538 IAQPPLYGVKQGKNITYVQPGKNAEEELKQVV----ASLPASPKPSVQRYKGLGEMDDHQ 593

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +        +  ++ A+ +   
Sbjct: 594 LWETTMDPSNRMMARVSVDDAIAADQI 620



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QRYKGLGEM+  QLWETT++P  R + RV + DA  AD +F  LMGD VEPRR FI+E
Sbjct: 579 SVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQIFEMLMGDRVEPRRAFIEE 638

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 639 NAHYVKNLDI 648


>gi|126652425|ref|ZP_01724598.1| DNA topoisomerase IV subunit B [Bacillus sp. B14905]
 gi|126590846|gb|EAZ84960.1| DNA topoisomerase IV subunit B [Bacillus sp. B14905]
          Length = 658

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 264/662 (39%), Positives = 388/662 (58%), Gaps = 16/662 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    S Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+
Sbjct: 1   MTNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V ++ D S +V D GRG+PT +H + G    E+I T LHAGGKF Q  YK SGGL
Sbjct: 60  GSHIIVKIHKDQSISVRDFGRGMPTGMH-KMGKPTPEIIFTVLHAGGKFGQGGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS++L++ I R+G  Y   F + G     L   G     TGT V FLP  
Sbjct: 119 HGVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGHPVTTLEEIGQTK-QTGTLVHFLPDE 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFSV  +NYDTL  RLRE +FL   ++I LID+R  E +    FY+ GIEAFV+YL+  
Sbjct: 178 TIFSVTKYNYDTLAERLRESAFLLKGLKIELIDER-EEGKNDMFFYENGIEAFVAYLNEE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L      ++G +D+I ++ A ++NDGY E +L F NN+  +DGGTH +G ++ALTR 
Sbjct: 237 KDVLHP-VKYVEGIQDDIEVEFAFQYNDGYSETILSFVNNVRTRDGGTHETGAKAALTRV 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357
              Y  K    K   +++ G D REG  +++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 296 FNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V++ +   LEE+   +  +V+K + A  VR+AAR+AR+     +K       L GKL 
Sbjct: 356 SVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLT 415

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+  ++EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   ++ ++EI 
Sbjct: 416 PAQSRNAARNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEIS 475

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G   F +    Y+K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 476 TIIHAIGAGVG-TDFAVEDSAYNKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVF 534

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   E  L+  +        ++ +     + +       +
Sbjct: 535 IALPPLYKVSKGTGKKEVIEYAWTENDLQKAIKQVGKGYILQRYKGLGEMNADQLWDTTM 594

Query: 592 D-DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + D   + ++  +     ++              +  +          AN L     + E
Sbjct: 595 NPDTRTLIRVTIEDGARAERRVTTLMGDKVEPRRKWIEANVDFGMEDDANILENEFIQQE 654

Query: 651 KS 652
           + 
Sbjct: 655 EG 656



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 108/260 (41%), Gaps = 11/260 (4%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              R + ++    +   +     ++      L        S+N  RN   +   ++    
Sbjct: 379 KAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLTPAQSRNAARN---ELYLVEGDSA 435

Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                  +    QA++     V N E  +  ++    +++  ++ I       +    + 
Sbjct: 436 GGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEISTIIHAIGAGVGTDFAVEDSA 495

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI--- 716
            + +V           +      F +      I + ++      +  +     K ++   
Sbjct: 496 YNKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFIALPPLYKVSKGTGKKEVIEY 555

Query: 717 -TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                 L   I  +G KG  +QRYKGLGEMNA QLW+TT+NPDTR+L+RV I D ++A+ 
Sbjct: 556 AWTENDLQKAIKQVG-KGYILQRYKGLGEMNADQLWDTTMNPDTRTLIRVTIEDGARAER 614

Query: 776 LFSRLMGDEVEPRREFIQEN 795
             + LMGD+VEPRR++I+ N
Sbjct: 615 RVTTLMGDKVEPRRKWIEAN 634


>gi|257885591|ref|ZP_05665244.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501]
 gi|257821447|gb|EEV48577.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501]
          Length = 648

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 291/627 (46%), Positives = 416/627 (66%), Gaps = 12/627 (1%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++          YDA  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE 
Sbjct: 1   MTEERSLVERAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDEV 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFATKIHVIIEKDNSITVIDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +++ +EGN+Y   +  G + + L +     +  GT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVKVYKEGNVYYQEYRRGAVVDDLKII-EQTDRHGTTVHFT 178

Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+    F++  L  R+REL+FLN  ++IS+ DKR  EP      Y+GGI+++V Y
Sbjct: 179 PDPEIFTETTEFDFSKLATRIRELAFLNRGMRISIEDKREEEPVINEYHYEGGIKSYVEY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+ +K  +   P+ ++G + +I+++++M++ DGYH N++ F NNI   +GGTH SG ++A
Sbjct: 239 LNANKTVIFPEPVYLEGEQQDIAVEVSMQYTDGYHSNIMSFANNIHTYEGGTHESGFKTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y  K    K++  ++ G+D REG T+V+SIK PDP+F  QTK KL +SEVR+V
Sbjct: 299 LTRVINDYARKQKLMKENDDNLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTV 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
            +   ++    +L E+P   + IV+K L AS  R AA+RAR++TRRKG L+I++LPGKLA
Sbjct: 359 TDRLFSEHFMKFLLENPSVGRQIVEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  DP+K ELF+VEGDSAGGSAKQGR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNDPEKCELFIVEGDSAGGSAKQGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G+D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++Y
Sbjct: 479 SLFTAMGTGFGED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLYG+ +GK++ YV+  ++ E+ L          L    K  + +      +DD  
Sbjct: 538 IAQPPLYGVKQGKNITYVQPGKNAEEELKQVV----ASLPASPKPSVQRYKGLGEMDDHQ 593

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622
             +  +        +  ++ A+ +   
Sbjct: 594 LWETTMDPSNRMMARVSVDDAIAADQI 620



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QRYKGLGEM+  QLWETT++P  R + RV + DA  AD +F  LMGD VEPRR FI+E
Sbjct: 579 SVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQIFEMLMGDRVEPRRAFIEE 638

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 639 NAHYVKNLDI 648


>gi|229829522|ref|ZP_04455591.1| hypothetical protein GCWU000342_01614 [Shuttleworthia satelles DSM
           14600]
 gi|229791953|gb|EEP28067.1| hypothetical protein GCWU000342_01614 [Shuttleworthia satelles DSM
           14600]
          Length = 642

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 297/591 (50%), Positives = 394/591 (66%), Gaps = 5/591 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M + +    Y AD IQIL+GL+AV+KRP MYIG T  + GLHH++YE++DN++DE+L GY
Sbjct: 1   MEEEMAQQEYGADQIQILEGLEAVRKRPGMYIGSTSAQ-GLHHLVYEIVDNSVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+N   S TV D+GRGIPT ++ + GI A EV+ T LHAGGKF    YKVSGGL
Sbjct: 60  CHHIRVTINRGNSVTVVDDGRGIPTGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I+R+G I+   +  G     L V GS   ++TGT+VTFLP  
Sbjct: 120 HGVGASVVNALSLWLEVEIRRDGKIWRQRYERGKTMGSLKVVGSCDPSETGTKVTFLPDD 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF   +F+Y  L+ RLRE +FL   ++ISL D+R  E RE + +Y+GGI+ FVSYL+R 
Sbjct: 180 RIFETTEFDYGVLRRRLRETAFLTKGLRISLRDEREEEVREDSFYYEGGIKEFVSYLNRG 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            KPL +  I  +G+ + + +++AM+ ND Y E    F NNI   +GGT ++G ++A+T  
Sbjct: 240 DKPLYRDVIYCEGTSNGVYVEVAMQHNDAYKEACYSFVNNIITPEGGTQVTGFKAAVTNV 299

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
             SY  ++   K  ++    DD REG TSV+SIK+ DP+F  QTK+KL +SE R  V++ 
Sbjct: 300 FNSYAHENKLIKDTEKLDS-DDIREGLTSVISIKIEDPQFEGQTKQKLGNSEARGAVQAV 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +LE++P  A++IV+K   A   R+AAR+ARDLTRRK  LD A+LPGKLADCS 
Sbjct: 359 VTEQLTYFLEQNPQAARLIVEKSQLAQRAREAARKARDLTRRKSPLDGAALPGKLADCSS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP + E+F+VEGDSAGGSAK+ R+R  QAILPLRGKILNVE+AR D++  + EI  +IT
Sbjct: 419 KDPAECEIFIVEGDSAGGSAKEARNRRTQAILPLRGKILNVEKAREDRIYGNAEIKAMIT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGI  D FDI KLRYHKIIIMTDADVDGAHI TL+LTF +R MP LI  G +Y+  P
Sbjct: 479 AFGTGI-HDEFDIEKLRYHKIIIMTDADVDGAHIATLMLTFLYRFMPELIRQGNVYLATP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           PLY I + +   Y   +E   + L        I        G +    L  
Sbjct: 538 PLYKIEKNRKEWYAYSDEEQNNILNRIGRDNSIKIQRYKGLGEMDAQQLWE 588



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +E  +   +++   +          +         ++      V    +    
Sbjct: 456 ILNVEKAREDRIYGNAEIKAMITAFGTGIHDEFDIEKLRYHKIIIMTDADVDGAHIATLM 515

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRY 739
             F +    + I    +      +  +  N  +          + +  IGR   I +QRY
Sbjct: 516 LTFLYRFMPELIRQGNVYLATPPLYKIEKNRKEWYAYSDEEQNNILNRIGRDNSIKIQRY 575

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSL 797
           KGLGEM+A QLWETT++PDTR L RV++   D ++ +  FS LMG+EVEPRREFI+EN+ 
Sbjct: 576 KGLGEMDAQQLWETTMDPDTRILKRVQVIDDDEAEINLTFSTLMGEEVEPRREFIEENAK 635

Query: 798 PSALDI 803
            + LDI
Sbjct: 636 YATLDI 641


>gi|304385859|ref|ZP_07368203.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pediococcus
           acidilactici DSM 20284]
 gi|304328363|gb|EFL95585.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pediococcus
           acidilactici DSM 20284]
          Length = 648

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 290/598 (48%), Positives = 395/598 (66%), Gaps = 11/598 (1%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D  +        YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE
Sbjct: 1   MADEKETKAELAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A+ I V +  D S TVSDNGRGIP D+ K+ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFANKIDVVVEKDNSITVSDNGRGIPVDIQKKTGKPALETVYTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEV 173
           VSGGLHGVG SVVNALS+ L  R+ R+G IY + F  G +  P+ V G   N    GT V
Sbjct: 120 VSGGLHGVGASVVNALSTELDARVMRDGKIYYIDFEQGKVKTPMKVLGPTKNPDDHGTIV 179

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  DIF     F+ + L+ R+REL+FLN  ++I+L D R   P E    Y+GGI  +
Sbjct: 180 HFVPDPDIFQETTVFDINILRTRIRELAFLNKGLRITLRDMRPENPTEDDFLYEGGIRHY 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL++ K+ +   PI ++G    I++++AM++ +GY   +L FTNNI   +GGTH  G 
Sbjct: 240 VEYLNKGKEVIFPEPIYVEGITKGITVEVAMQYIEGYQSKLLTFTNNIHTYEGGTHEEGF 299

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           + ALTR I  Y + +   K++   + GDD REG T+V+S+K PDP+F  QTK KL +S+ 
Sbjct: 300 KRALTRVINDYAKNNGILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDA 359

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+ V     +  S +L E+P  A+ IV K   A+  R AA+RAR++TR+K  L++ +LPG
Sbjct: 360 RTAVNEVFAETFSKFLLENPKVARQIVDKGTLAAKARIAAKRAREVTRKKSGLELNNLPG 419

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLAD + +DP+ SELF+VEGDSAGGSAK GRSR  QAILP+RGKILNVE+A  D++L+++
Sbjct: 420 KLADNTSKDPEISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATLDRVLANE 479

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI +L TALGTG G+D FD+ K  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G
Sbjct: 480 EIRSLFTALGTGFGED-FDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAG 538

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           ++YI +PPLY + +GK ++Y+  +E LE  L   S S + +       G +    L  
Sbjct: 539 YVYIAQPPLYQVRQGKMIKYIDSDEELEAVLGQLSPSPKPVIQRYKGLGEMDAEQLWE 596



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 15/223 (6%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           ++ + QA++     + N E      V    ++ +    +  
Sbjct: 431 ISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATLDRVLANEEIRSLFTALGT 490

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
              + +  +  N   L+      V    +        +      I +  +       L  
Sbjct: 491 GFGEDFDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAGYVY-IAQPPLYQ 549

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTLNPDTRS 761
           +  G  IK       L+ +       +S      +QRYKGLGEM+A QLWETT+NP+ R 
Sbjct: 550 VRQGKMIKYIDSDEELEAVLGQ----LSPSPKPVIQRYKGLGEMDAEQLWETTMNPENRR 605

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           LLRV   D   A+  F  LMGD+VEPRR+FI++N++    LDI
Sbjct: 606 LLRVSADDLDAANGDFEMLMGDKVEPRRKFIEDNAVFVENLDI 648


>gi|296392546|ref|YP_003657430.1| DNA gyrase subunit B [Segniliparus rotundus DSM 44985]
 gi|296179693|gb|ADG96599.1| DNA gyrase, B subunit [Segniliparus rotundus DSM 44985]
          Length = 673

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 269/609 (44%), Positives = 366/609 (60%), Gaps = 35/609 (5%)

Query: 1   MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+      SSY A SI IL+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ 
Sbjct: 1   MSEKKNADKSSYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GYA  + VTL  DG   V D+GRGIP   H   G    EV++T LHAGGKF+  SY VSG
Sbjct: 60  GYATRVDVTLLADGGVEVVDDGRGIPVAPHAS-GPPTVEVVLTVLHAGGKFDSDSYAVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG+SVVNALS  L++ I  +G  +  S+       PL   G     TGT V F   
Sbjct: 119 GLHGVGISVVNALSYKLEVEIDVDGFHWSQSYDKAKP-GPLTK-GDPVKRTGTTVRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR------------------- 219
            +IF    +++DT+  RL+E++FLN  + I+L D R  +                     
Sbjct: 177 PEIFETTHYDFDTIARRLQEMAFLNKGLIITLTDLREGQIDAAEDGEALDTAEVARSEQE 236

Query: 220 ---------EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                         Y GG+  +V +++R K  +  S +  +G  +   +++AM+WN GY 
Sbjct: 237 AQAQAPAVKRREYHYPGGLHDYVGHINRTKTAVHNSIVSFEGKGEGHEVEIAMQWNSGYT 296

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  F N I   +GGTH  G R+ALT  +  Y       K+  +++ GDD REG  +V+
Sbjct: 297 ESVYTFANTINTHEGGTHEEGFRAALTSTMNKYARDKKILKEKDKNLTGDDVREGLAAVI 356

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ +P+F  QTK KL ++E+RS V+   N+ L+ W E +P EAK+IV K   A + R+
Sbjct: 357 SVKLGEPQFEGQTKTKLGNTEIRSFVQKICNEELTHWFEANPSEAKLIVTKAQQAYLARE 416

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR AR+  RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR+ E QAI
Sbjct: 417 AARSARETVRRKTATDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGSAKSGRNSEFQAI 476

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++M DADVDG
Sbjct: 477 LPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHKIVLMADADVDG 535

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            HI TLLLT  FR M  L+ +G +Y+  PPLY +   ++       +   D LI   LS 
Sbjct: 536 QHISTLLLTLLFRFMRPLVEHGHVYLAAPPLYKLKWQRAEPEYAYSDRERDALIEAGLSA 595

Query: 571 EIELFCDSK 579
              +  D  
Sbjct: 596 GKRINKDDG 604



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 62/88 (70%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +L++   S G++ I+    +QRYKGLGEMNA +LWETT++PDTR+L  V + DA+ AD+L
Sbjct: 587 ALIEAGLSAGKR-INKDDGVQRYKGLGEMNAKELWETTMDPDTRTLRLVTMDDAAAADEL 645

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMG++V  RR FI  N+     LD+
Sbjct: 646 FSILMGEDVPARRGFIARNARDVRFLDV 673


>gi|293365094|ref|ZP_06611811.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus oralis
           ATCC 35037]
 gi|307702197|ref|ZP_07639157.1| DNA gyrase, B subunit [Streptococcus oralis ATCC 35037]
 gi|322374607|ref|ZP_08049121.1| DNA gyrase, B subunit [Streptococcus sp. C300]
 gi|291316544|gb|EFE56980.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus oralis
           ATCC 35037]
 gi|307624210|gb|EFO03187.1| DNA gyrase, B subunit [Streptococcus oralis ATCC 35037]
 gi|321280107|gb|EFX57146.1| DNA gyrase, B subunit [Streptococcus sp. C300]
          Length = 648

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFEKLNKRIQELAFLNRGLRISITDKREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         SK  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L    S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|315654385|ref|ZP_07907293.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           ATCC 51333]
 gi|315491420|gb|EFU81037.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           ATCC 51333]
          Length = 686

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 260/604 (43%), Positives = 364/604 (60%), Gaps = 31/604 (5%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
                 YDA  I++L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DESL GY D 
Sbjct: 17  EKPEEHYDASDIRVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDESLAGYCDH 75

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VTL  DG   V+DNGRGIP   H  E     EV+MT LHAGGKF   SY VSGGLHGV
Sbjct: 76  IEVTLQADGGVRVADNGRGIPVAEHPSEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 135

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G+SVVNALS+ +   +KR+G  + + F N G +  PL   G    +TGT   F P  +IF
Sbjct: 136 GISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRR-GEPTEETGTVQVFYPDPEIF 194

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREI 221
              +F+Y+TL+ R ++++FLN  ++I++ D+R                         R +
Sbjct: 195 ETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTAEGDFVTGDQDGDADSPKVGRRSV 254

Query: 222 TMFYKGGIEAFVSYLDRH------KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
           +  Y+ G+  +V +++         + ++     ++   + +++++A++W   Y E++  
Sbjct: 255 SYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEIALQWTSAYSESIYT 314

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + N I   +GGTH  G R+ALT  +     +    K    ++ GDDCREG T+V+S+K+ 
Sbjct: 315 YANTINTTEGGTHEEGFRAALTSLMNKVGREKGFIKDKDENLSGDDCREGLTAVISVKIR 374

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL ++E R+ V+  V   L  W + HP E K I+ K   A   R+AAR+A
Sbjct: 375 NPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAKAQSAQQARNAARKA 434

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RD TRRK  LD  S+PGKL DCS RD    E+FLVEGDSAGGSA  GR   +QAILPLRG
Sbjct: 435 RDATRRKTALDSFSMPGKLRDCSSRDASDCEIFLVEGDSAGGSAVAGRDPAHQAILPLRG 494

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR D+ L ++EI +LITA GTGIG+D FD++KLRY+KI++M DADVDG HI T
Sbjct: 495 KILNVEKARLDRALDNKEIQSLITAFGTGIGED-FDLSKLRYYKIVLMADADVDGQHITT 553

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLT  FR M  LI NG +++  PPLY +            +  +D +++  L     + 
Sbjct: 554 LLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDKMVSLGLDSGARMP 613

Query: 576 CDSK 579
            +  
Sbjct: 614 KEGG 617



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A +LWETT++P  R L +V + +A+ AD++FS LMG++V  RR FIQ N
Sbjct: 618 IQRYKGLGEMSAQELWETTMDPSARLLKQVTMDEAASADEVFSLLMGEDVSSRRAFIQRN 677

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 678 AQDVRFLDI 686


>gi|52080434|ref|YP_079225.1| DNA topoisomerase IV subunit B [Bacillus licheniformis ATCC 14580]
 gi|52785813|ref|YP_091642.1| DNA topoisomerase IV subunit B [Bacillus licheniformis ATCC 14580]
 gi|52003645|gb|AAU23587.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580]
 gi|52348315|gb|AAU40949.1| ParE [Bacillus licheniformis ATCC 14580]
          Length = 655

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 270/658 (41%), Positives = 395/658 (60%), Gaps = 22/658 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q   Y+ DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L G+ D 
Sbjct: 3   KKQQVDYNDDSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEVLAGHGDH 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S +V D GRG+PT +H + G    E+I+T LHAGGKF Q  YK SGGLHGV
Sbjct: 62  IIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I+R+GN+Y   F N G     L   G+    TGT + F P   +F
Sbjct: 121 GASVVNALSEWLTVTIERDGNVYRQRFENGGKPVTSLDKIGTTK-KTGTLIHFKPDPAMF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   FN++TL  RLRE +FL   ++I LID+R  +  + T  Y+ GIEAFV+     +K 
Sbjct: 180 STTTFNFETLSERLRESAFLLKGLKIELIDER--DQTKETFLYENGIEAFVA-YLNEEKD 236

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +   +  +G  + I +D A ++NDGY EN+L F NN+  KDGGTH SG ++A+TR    
Sbjct: 237 ALSEVVSFEGEHNGIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V++ V
Sbjct: 297 YARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEELLQFEGQTKGKLGTSEARSAVDAIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ L+ +LEE+   A ++VKK + AS  R+AAR+AR+   + +K     A+L GKL    
Sbjct: 357 SEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+   +  ++EI T+I
Sbjct: 417 SRNPSKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTII 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G G+G D FDI  + Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI +G ++I  
Sbjct: 477 HAIGGGVGAD-FDIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIAL 535

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           PPLY ++    + + ++Y   +E ++D L        I+ +    G ++ + L       
Sbjct: 536 PPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGKGYTIQRY-KGLGEMNADQLWET---- 590

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
             ++   +                      +  +     +   +A  L+  +   E  
Sbjct: 591 -TMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILENE 647



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 6/265 (2%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +     + +       ++               +      S  +          ++   
Sbjct: 368 RETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAQSRNPSKNELYL 427

Query: 597 IDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
           ++           +    QAV+     V N E  +  ++    ++   ++ I       +
Sbjct: 428 VEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADF 487

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                N D ++           +      F +      I   ++      +  +     K
Sbjct: 488 DIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGK 547

Query: 714 IKI---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
            +I         +D +     KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA
Sbjct: 548 KEIIEYAWSDEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDA 607

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++ +   + LMGD+VEPRR++I++N
Sbjct: 608 ARVERRVTTLMGDKVEPRRKWIEKN 632


>gi|319645607|ref|ZP_07999839.1| DNA topoisomerase 4 subunit B [Bacillus sp. BT1B_CT2]
 gi|317392493|gb|EFV73288.1| DNA topoisomerase 4 subunit B [Bacillus sp. BT1B_CT2]
          Length = 657

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 270/658 (41%), Positives = 395/658 (60%), Gaps = 22/658 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q   Y+ DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L G+ D 
Sbjct: 5   KKQQVDYNDDSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEVLAGHGDH 63

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S +V D GRG+PT +H + G    E+I+T LHAGGKF Q  YK SGGLHGV
Sbjct: 64  IIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGV 122

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I+R+GN+Y   F N G     L   G+    TGT + F P   +F
Sbjct: 123 GASVVNALSEWLTVTIERDGNVYRQRFENGGKPVTSLDKIGTTK-KTGTLIHFKPDPAMF 181

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   FN++TL  RLRE +FL   ++I LID+R  +  + T  Y+ GIEAFV+     +K 
Sbjct: 182 STTTFNFETLSERLRESAFLLKGLKIELIDER--DQTKETFLYENGIEAFVA-YLNEEKD 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +   +  +G  + I +D A ++NDGY EN+L F NN+  KDGGTH SG ++A+TR    
Sbjct: 239 ALSEVVSFEGEHNGIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNE 298

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V++ V
Sbjct: 299 YARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEELLQFEGQTKGKLGTSEARSAVDAIV 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ L+ +LEE+   A ++VKK + AS  R+AAR+AR+   + +K     A+L GKL    
Sbjct: 359 SEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAQ 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+   +  ++EI T+I
Sbjct: 419 SRNPSKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTII 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G G+G D FDI  + Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI +G ++I  
Sbjct: 479 HAIGGGVGAD-FDIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIAL 537

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           PPLY ++    + + ++Y   +E ++D L        I+ +    G ++ + L       
Sbjct: 538 PPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGKGYTIQRY-KGLGEMNADQLWET---- 592

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
             ++   +                      +  +     +   +A  L+  +   E  
Sbjct: 593 -TMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILENE 649



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 6/265 (2%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +     + +       ++               +      S  +          ++   
Sbjct: 370 RETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAQSRNPSKNELYL 429

Query: 597 IDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
           ++           +    QAV+     V N E  +  ++    ++   ++ I       +
Sbjct: 430 VEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADF 489

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                N D ++           +      F +      I   ++      +  +     K
Sbjct: 490 DIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGK 549

Query: 714 IKI---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
            +I         +D +     KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA
Sbjct: 550 KEIIEYAWSDEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDA 609

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++ +   + LMGD+VEPRR++I++N
Sbjct: 610 ARVERRVTTLMGDKVEPRRKWIEKN 634


>gi|295101859|emb|CBK99404.1| DNA gyrase subunit B [Faecalibacterium prausnitzii L2-6]
          Length = 664

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 270/607 (44%), Positives = 380/607 (62%), Gaps = 23/607 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++   +  Y+A  IQ+LKGL+AV+KRP MYIG T GE GLHH++YE++DNAIDE+L GY 
Sbjct: 11  AETATDHEYNASEIQVLKGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAIDEALAGYC 69

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119
           D I V +       V+DNGRGIP D+  + G+ A  V+ T LHAGGKF      YKV+GG
Sbjct: 70  DHIEVKILKGDIIQVTDNGRGIPVDIQADTGLPAVTVVYTILHAGGKFGGENSGYKVAGG 129

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPS 178
           LHGVG SVVNA S WL + ++R+G  YE +F  G  D PL   G+   + TGT VTF P 
Sbjct: 130 LHGVGASVVNACSEWLTVNVRRDGREYEQTFRRGDPDGPLKCIGTVDPSVTGTRVTFKPD 189

Query: 179 SDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS-------------PEPREITMF 224
            ++F     +N++TL+ RLRE SFLN+ V+I+L D+R              P  R   M 
Sbjct: 190 PEMFKDTTVYNFETLEKRLREESFLNAGVKITLTDERELYTPVLEDGKEGEPTYRTEVMC 249

Query: 225 YKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y+GGI++FV+Y    R  + L  + I ++G  D    ++A+++N  Y+E +L F NN+  
Sbjct: 250 YEGGIKSFVTYLGEKRDLEVLHPNVIYLKGQTDRGMAEIALQYNSSYNELLLSFANNVNT 309

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            DGGTH  G RS+LTR    Y       K    ++ G D REG   V+S+K+ +  F  Q
Sbjct: 310 PDGGTHEEGFRSSLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQEAEFEGQ 369

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++E+R++V + V   L  + EE+P  AK I +K   A+  R AA++AR+L RRK
Sbjct: 370 TKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKARELVRRK 429

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+ + +PGKLADC E+DP ++E+F+VEGDSAGGSAK GR    QAILPL GK+LNVE+
Sbjct: 430 SALETSRMPGKLADCREKDPTRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWGKMLNVEK 489

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR D++  + ++  ++ ALG GIG D FDI+KLRY K+ IM DADVDG+HI TL+LTFFF
Sbjct: 490 ARADRIYGNDKLMPVVLALGCGIG-DEFDISKLRYDKVFIMADADVDGSHICTLMLTFFF 548

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           R M  LI  G +Y+ +PPL+ + +G +++Y  ++  +   L++Q +           G +
Sbjct: 549 RYMRPLIEQGHVYVAQPPLFKVQKGSTIKYAYNDAEMA--LLSQEMPGAKINRYKGLGEM 606

Query: 583 SKNDLRN 589
           +   L  
Sbjct: 607 NPEQLWE 613



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 54/71 (76%)

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           G  + RYKGLGEMN  QLWETT+NPD R ++R+ I DA +AD+ F+ LMGD+VEPRR FI
Sbjct: 594 GAKINRYKGLGEMNPEQLWETTMNPDNRVIVRITIEDAEKADEAFTILMGDQVEPRRRFI 653

Query: 793 QENSLPSALDI 803
           + N+  + LD+
Sbjct: 654 ETNAQYAKLDV 664


>gi|302761372|ref|XP_002964108.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii]
 gi|300167837|gb|EFJ34441.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii]
          Length = 723

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 263/560 (46%), Positives = 358/560 (63%), Gaps = 11/560 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SYDA  IQ+L+GL+ V++RP MYIG T G  GLHH+IYEVLDNAIDE   G+A  + V 
Sbjct: 84  TSYDAGKIQVLEGLEPVRRRPGMYIGST-GPRGLHHLIYEVLDNAIDEVQAGFATQVDVV 142

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVGV 125
           L+ DGS +++DNGRGIPTD+H   G S  E ++T LHAGGKF      Y VSGGLHGVGV
Sbjct: 143 LHSDGSVSITDNGRGIPTDVHPATGKSTLETVLTVLHAGGKFGGDESGYTVSGGLHGVGV 202

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLPSSDIF 182
           SVVNALS  L+  + R G  Y   F  G     L        + + TGT V FLP  ++F
Sbjct: 203 SVVNALSKRLEATVWRNGQEYRQVFQRGKAVGSLTTRSLPRESSSRTGTCVKFLPDDEVF 262

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +    F+ + +  RLRE++FLN  V I+L ++ +         + GG+  +V +L++ K 
Sbjct: 263 TTTTAFDPNIVSSRLREVAFLNPEVTINLKEESATTD--EVFHFGGGLVEYVEWLNQDKT 320

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            +   PI     +D+IS++++M+W  D Y + +L + N+I   DGGTHL GL+  LTR +
Sbjct: 321 KIH-DPISFSVEKDDISVNVSMQWCSDAYSDTLLGYANSIRTADGGTHLDGLKMGLTRTL 379

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
                +S   ++   ++ G+  REG T V+S+K+P+P F  QTK +L + EVR +VE  V
Sbjct: 380 NILGRRSKAIREKGDNLSGEHAREGLTCVISVKVPEPEFEGQTKTRLGNVEVRKIVEQAV 439

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + ++ +LE  P   + I+ K L A    +AA++AR+L RRK VL  ++LPGKLADC+  
Sbjct: 440 IEQVTEYLEFRPDTLEAILSKALQAYKAAEAAKKARELVRRKNVLKTSTLPGKLADCTSS 499

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP+ SE+F+VEG+SAGGSAKQGR R  QAILPL+GKILN+ER     +  +QEI  LI A
Sbjct: 500 DPRVSEIFIVEGESAGGSAKQGRDRAFQAILPLKGKILNIERKDDAAIYKNQEIQDLIVA 559

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG G   + F  + LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L   G++Y+  PP
Sbjct: 560 LGLGTRGEEFHKDTLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDGGYIYVGVPP 619

Query: 541 LYGITRGKSLQYVKDEESLE 560
           LY + RGK   Y   E  L+
Sbjct: 620 LYKVERGKHAHYCYSENELQ 639



 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           + +H        ++      V    +      F F  +        I      +  +   
Sbjct: 567 EEFHKDTLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDGGYIYVGVPPLYKVERG 626

Query: 711 GDKIKITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                       L  +          ++QR+KGLGEM   QLW+TTL+P  R L ++ + 
Sbjct: 627 KHAHYCYSENE-LQGLLGTFAANAPYNIQRFKGLGEMMPLQLWDTTLDPSKRMLKKLTLE 685

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS---LPSALDI 803
           DA +A   FSRLMGD+VEPR+E I +++       LD+
Sbjct: 686 DAVEASFTFSRLMGDKVEPRKELILKSAAQFKQQNLDV 723


>gi|315657693|ref|ZP_07910575.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492165|gb|EFU81774.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 686

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 260/604 (43%), Positives = 364/604 (60%), Gaps = 31/604 (5%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
                 YDA  I++L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DESL GY D 
Sbjct: 17  EKPEEHYDASDIRVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDESLAGYCDH 75

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VTL  DG   V+DNGRGIP   H  E     EV+MT LHAGGKF   SY VSGGLHGV
Sbjct: 76  IEVTLQADGGVRVADNGRGIPVAEHPSEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 135

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G+SVVNALS+ +   +KR+G  + + F N G +  PL   G    +TGT   F P  +IF
Sbjct: 136 GISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRR-GEPTEETGTVQVFYPDPEIF 194

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREI 221
              +F+Y+TL+ R ++++FLN  ++I++ D+R                         R +
Sbjct: 195 ETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTAEGDFVTGDQDGDADSPKVGRRSV 254

Query: 222 TMFYKGGIEAFVSYLDRH------KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
           +  Y+ G+  +V +++         + ++     ++   + +++++A++W   Y E++  
Sbjct: 255 SYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEIALQWTSAYSESIYT 314

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + N I   +GGTH  G R+ALT  +     +    K    ++ GDDCREG T+V+S+K+ 
Sbjct: 315 YANTINTTEGGTHEEGFRAALTSLMNKIGREKGFIKDKDENLSGDDCREGLTAVISVKIR 374

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL ++E R+ V+  V   L  W + HP E K I+ K   A   R+AAR+A
Sbjct: 375 NPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAKAQSAQQARNAARKA 434

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RD TRRK  LD  S+PGKL DCS RD    E+FLVEGDSAGGSA  GR   +QAILPLRG
Sbjct: 435 RDATRRKTALDSFSMPGKLRDCSSRDASDCEIFLVEGDSAGGSAVAGRDPAHQAILPLRG 494

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR D+ L ++EI +LITA GTGIG+D FD++KLRY+KI++M DADVDG HI T
Sbjct: 495 KILNVEKARLDRALDNKEIQSLITAFGTGIGED-FDLSKLRYYKIVLMADADVDGQHITT 553

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLT  FR M  LI NG +++  PPLY +            +  +D +++  L     + 
Sbjct: 554 LLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDKMVSLGLDSGARMP 613

Query: 576 CDSK 579
            +  
Sbjct: 614 KEGG 617



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A +LWETT++P  R L +V + +A+ AD++FS LMG++V  RR FIQ N
Sbjct: 618 IQRYKGLGEMSAQELWETTMDPSARLLKQVTMDEAASADEVFSLLMGEDVSSRRAFIQRN 677

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 678 AQDVRFLDI 686


>gi|307709096|ref|ZP_07645555.1| DNA gyrase, B subunit [Streptococcus mitis SK564]
 gi|307620042|gb|EFN99159.1| DNA gyrase, B subunit [Streptococcus mitis SK564]
          Length = 648

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N    +YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQNYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRAKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L    S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRAKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|15829210|ref|NP_326570.1| DNA gyrase subunit B [Mycoplasma pulmonis UAB CTIP]
 gi|14090154|emb|CAC13912.1| DNA GYRASE SUBUNIT B [Mycoplasma pulmonis]
          Length = 644

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 265/597 (44%), Positives = 381/597 (63%), Gaps = 15/597 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS N   + Y+A +IQ+LKGL+ V+KRP MYIG T G+ GLHH+I+E++DN++DE++ G+
Sbjct: 3   MSKN---NQYNASNIQVLKGLEPVRKRPGMYIG-TTGKKGLHHLIWEIVDNSVDETMAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  IT+TL+ D   T+ D+GRGIP D H E GIS  E ++T LHAGGKF+ +SYKVSGGL
Sbjct: 59  ASQITITLDNDNLITIEDDGRGIPVDRHPETGISTVETVLTVLHAGGKFDSESYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178
           HGVG SVVNALS+ LK  IKR   ++ + F + G +  PL V      + TGT+++F P 
Sbjct: 119 HGVGASVVNALSTNLKAWIKRHNKLHYVEFHDGGKILKPLEVISELESDQTGTKISFQPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I    DF+ + ++ R ++L++LN  + I+++D R         +++GGI  ++  L++
Sbjct: 179 FSIMEKNDFDLEVVKDRAKQLAYLNKQLVINVVDNRVG--YTKQFYFEGGIVDYIKELNK 236

Query: 239 HKKPLMQSPIRIQG-----SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            KK L    I  +G         + +++A+++ D Y  N++ + NNI   +GGTH  G  
Sbjct: 237 SKKVLHDQTIYSEGANVLEDNPEVIVEVAIQYTDSYQSNIVSYANNILTIEGGTHEQGFF 296

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L R +  +       K ++  +I DD +EG ++++SIK  DP F  QTK KL + + R
Sbjct: 297 DGLVRILNKFATNLGLVKLEEEKLIRDDVKEGISAIISIKHVDPIFEGQTKGKLGNKDAR 356

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V    +     +L E+P+EAK I+ KV++A   R A   AR+  RRK   DI+SLPGK
Sbjct: 357 IAVNKIFSKNFERFLNENPVEAKNIILKVINARKARMAGLLAREAVRRKSAFDISSLPGK 416

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS ++ + SEL++VEG+SAGGSAK GR RE QAILPLRGK++N E+   +K+ +++E
Sbjct: 417 LADCSSKNAEISELYIVEGNSAGGSAKMGRDREFQAILPLRGKVINAEKNNIEKVFNNEE 476

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +LI ALGTGI  + F+INKLRYHKIIIMTDADVDGAHIRTLLLTFF+R    LI  GF
Sbjct: 477 IQSLIIALGTGI-AEEFNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFKPLIEYGF 535

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRN 589
           +YI +PPLY I+     +Y  ++E  E+ L N   +S+         G +  + L +
Sbjct: 536 VYIAQPPLYKISISGKSRYAYNDEQKEEILANIKDVSKVAIQRYKGLGEMDPDQLWD 592



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 17/203 (8%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                     E+  I  VFN E  Q + ++L + +A   N    +  K           +
Sbjct: 454 LPLRGKVINAEKNNIEKVFNNEEIQSLIIALGTGIAEEFNINKLRYHK-----------I 502

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PC 720
           +      V    +      F +      I    +      +  +  +G            
Sbjct: 503 IIMTDADVDGAHIRTLLLTFFYRYFKPLIEYGFVYIAQPPLYKISISGKSRYAYNDEQKE 562

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            +L  I  + +  +++QRYKGLGEM+  QLW+TT++P  R++L+V+I DA++AD  F+ L
Sbjct: 563 EILANIKDVSK--VAIQRYKGLGEMDPDQLWDTTMDPGIRTMLQVQIEDAAKADWTFTTL 620

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MG EV PRREFI++N+     +D
Sbjct: 621 MGGEVAPRREFIEQNAKYVKNID 643


>gi|228992295|ref|ZP_04152226.1| DNA topoisomerase 4 subunit B [Bacillus pseudomycoides DSM 12442]
 gi|228767320|gb|EEM15952.1| DNA topoisomerase 4 subunit B [Bacillus pseudomycoides DSM 12442]
          Length = 654

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 264/663 (39%), Positives = 397/663 (59%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ + S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKNNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+G IYE  F N G+    L   G     +GT + F P  
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGYIYEQRFENGGVPATTLEKIGKTK-QSGTTMHFKPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++I++ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 SIFSTTNYNYETLCERLRESAFLLKGMKITIRDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEGRSSVD 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FTVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFTVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|213646831|ref|ZP_03376884.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 469

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 287/471 (60%), Positives = 369/471 (78%), Gaps = 4/471 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469


>gi|283797751|ref|ZP_06346904.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
 gi|291074426|gb|EFE11790.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
          Length = 639

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 257/622 (41%), Positives = 375/622 (60%), Gaps = 14/622 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + YDADSI +L+GL+AV+KRP MYIG   G  GL+H+IYE++DN++DE L G    I
Sbjct: 1   MGKAQYDADSITVLEGLEAVRKRPGMYIGGV-GTKGLNHLIYEIVDNSVDEHLAGECTSI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DGSCTV DNGRGIP ++HK+ G+SA  V+++ LHAGGKF+  +YK SGGLHGVG
Sbjct: 60  WVTLEADGSCTVRDNGRGIPVEMHKK-GVSAERVVLSTLHAGGKFDNSAYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSS 179
            SVVNALS  L ++I + G I+  ++  GI         L V G+   +TGT + FLP  
Sbjct: 119 SSVVNALSEHLDIKIYKNGQIHHDAYERGIPVVELVDGLLPVIGNTK-ETGTCINFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    F  + L+ RL E ++LN ++ I   ++R+ E  +I      GI A+V  ++  
Sbjct: 178 TIFEKTKFKAEWLKSRLHETAYLNPALTIYYENRRAGEEEKIVYSEPDGIIAYVKEINAG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+   PI  +GS + I ++ A+++ D + EN+L F NNI  ++GGTHL+G ++  T  
Sbjct: 238 KTPVH-EPIYFKGSMEGIEVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKTKFTML 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY  +    K+   +  G D R G T+V++IK PDP F  QTK KL S++    V + 
Sbjct: 297 INSYARELGILKEKDSNFTGADTRNGMTAVIAIKHPDPIFEGQTKTKLASADATKAVFTL 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             + L  + + +    K ++     ++ +R A  +A+     K      S  GKL++C  
Sbjct: 357 TGEELQRFFDRNLETLKAVIGCAEKSAKIRKAEEKAKTNMLTKSRFSFDS-NGKLSNCES 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RD +K E+F+VEGDSAGGSAK GR+R+ QAILP+RGKILNVE+A  DK+L++ EI T+I 
Sbjct: 416 RDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           A G G  +   + FDI+KLRY+KII+MTDADVDG+HI TLLLTF +R MP LI  G +YI
Sbjct: 476 AFGCGFSEGYGNDFDISKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPDLITEGHVYI 535

Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
             PPL+  I +    QY+ DE++LE Y    +    ++ +     + ++      ++   
Sbjct: 536 AMPPLFKVIPKKGEEQYLYDEKALEKYKKTHAGGFTLQRYKGLGEMDAEQLWETTLNPEN 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
           ++ K ++           E  +
Sbjct: 596 RVLKQVEIEDARMASEITEMLM 617



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 18/193 (9%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      V   +++   +N       + +    + S +   +I   +     ++GS
Sbjct: 453 ILNVEKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDISKLRYNKII--LMTDADVDGS 510

Query: 681 SIFSFGSKYK-RIFSNRIEENYLTIL------SLICNGDKIKITGPCSLLDTIFSIGRK- 732
            I +    +  R   + I E ++ I        +   G++  +       +      +K 
Sbjct: 511 HIDTLLLTFLYRFMPDLITEGHVYIAMPPLFKVIPKKGEEQYLYD-----EKALEKYKKT 565

Query: 733 ---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
              G ++QRYKGLGEM+A QLWETTLNP+ R L +V+I DA  A ++   LMG +V PRR
Sbjct: 566 HAGGFTLQRYKGLGEMDAEQLWETTLNPENRVLKQVEIEDARMASEITEMLMGSDVPPRR 625

Query: 790 EFIQENSLPSALD 802
           +FI +++  + +D
Sbjct: 626 QFIYDHAEEAEID 638


>gi|269314031|gb|ACZ36917.1| DNA gyrase B [Mycobacterium massiliense]
          Length = 651

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/643 (41%), Positives = 377/643 (58%), Gaps = 37/643 (5%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA  + VT+ 
Sbjct: 1   YSADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATTVEVTML 59

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DG   V D+GRGIP  +H   GI   +V+MT+LHAGGKF+  SY VSGGLHGVG+SVVN
Sbjct: 60  ADGGIQVKDDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS+ L++ I R+G  ++  +        L   G+A   TGT V F    +IF    +++
Sbjct: 119 ALSTKLEVEILRDGFEWQQVYTRSEP-GTLQK-GAATKKTGTTVRFWADPEIFETTTYDF 176

Query: 190 DTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEPR 219
           +T+  RL+E +FLN  + I L D+R                                + +
Sbjct: 177 ETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQAAESSAPHKVK 236

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y  G+  FV +++R K  +  + +   G  +   +++AM+WN GY E+V  F N 
Sbjct: 237 NRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVEIAMQWNAGYSESVHTFANT 296

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +V+S+K+ +P+F
Sbjct: 297 INTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVGEPQF 356

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L  W + +P +AK +V K + ++  R AAR+AR+L 
Sbjct: 357 EGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKARELV 416

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 417 RRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIIN 476

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG HI TLLLT
Sbjct: 477 VEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTLLLT 535

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             FR M  L+ +G +++ +PPLY +   +S       +   D L+   L    ++  D  
Sbjct: 536 LLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGKKINKDDG 595

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
             I +      +D     +  +        +  ++ A  +   
Sbjct: 596 --IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 636



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 5/74 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           L++     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 579 LMEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 637

Query: 778 SRLMGDEVEPRREF 791
           S LMG++VE RR F
Sbjct: 638 SILMGEDVEARRSF 651


>gi|167758061|ref|ZP_02430188.1| hypothetical protein CLOSCI_00399 [Clostridium scindens ATCC 35704]
 gi|167663958|gb|EDS08088.1| hypothetical protein CLOSCI_00399 [Clostridium scindens ATCC 35704]
          Length = 666

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 253/621 (40%), Positives = 355/621 (57%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YDADSI IL+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY   I 
Sbjct: 29  KKNTYDADSISILEGLEAVRKRPGMYIGSVS-TKGLNHLIYEMVDNAVDEHLAGYCSEIR 87

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGS T+SDNGRG+P DLH   G+SA  V+ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 88  VTLEKDGSATISDNGRGVPVDLHA-TGVSAERVVYTTLHAGGKFDDSAYKTSGGLHGVGS 146

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS+++ + + R+G I+   +  G     L        G     TGT+V FLP   
Sbjct: 147 SVVNALSTYMDVEVSRDGYIHHDRYERGKPVIELEDGLLPTIGKT-RKTGTKVNFLPDDT 205

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + ++ R+ E ++LN  + I   D+R  E   I      GI  F+  L+  K
Sbjct: 206 IFEKTRFRAEEVKSRMHETAYLNPDLTIIFEDRRGSETEHIVYHEPEGILGFIEDLNSKK 265

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +   P+  +G  D I +++A ++ + +HENVL F NNI   +GGTHL+G ++  T  I
Sbjct: 266 EAVH-EPVYFKGESDGIEVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVI 324

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +         
Sbjct: 325 NQYSRELGILKEKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKACSKVT 384

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ND +  + + +    K ++     A+ +R    RA+     K         GKLA+C  +
Sbjct: 385 NDEIIRYFDRNLDNLKKVISCAEKAAKIRKTEERAKTNLLTKQK-YSFDSNGKLANCESK 443

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 444 DAGKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLANAEIKTMINA 503

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI 
Sbjct: 504 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 563

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY    +    +Y+ D+++LE Y         ++ +     + ++      ++   +
Sbjct: 564 MPPLYKAMPKKGEEEYLYDDKALERYRKTHDGPFTLQRYKGLGEMDAQQLWETTLNPETR 623

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           + KL++           E  +
Sbjct: 624 MLKLVEIEDARMASGVTEMLM 644



 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 50/69 (72%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTLNP+TR L  V+I DA  A  +   LMG EV PRR FI E
Sbjct: 598 TLQRYKGLGEMDAQQLWETTLNPETRMLKLVEIEDARMASGVTEMLMGSEVPPRRTFIYE 657

Query: 795 NSLPSALDI 803
           N+  + LDI
Sbjct: 658 NATEAELDI 666


>gi|1107468|gb|AAA83016.1| gyrase B [Mycobacterium tuberculosis H37Rv]
          Length = 686

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 268/650 (41%), Positives = 377/650 (58%), Gaps = 37/650 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA 
Sbjct: 16  KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 74

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SGGLHG
Sbjct: 75  TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 133

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F
Sbjct: 134 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              +++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 192 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 251

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +  T  Y GG+  FV +++R K  +  S +   G      +++A+ WN GY E+
Sbjct: 252 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAIEWNAGYSES 311

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 312 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 371

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AA
Sbjct: 372 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 431

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 432 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 491

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG H
Sbjct: 492 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 550

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           I TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L    
Sbjct: 551 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 610

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 611 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 658



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 601 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 659

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 660 SILMGEDVDARRSFITRNAKDVRFLDV 686


>gi|331266709|ref|YP_004326339.1| DNA gyrase, B subunit [Streptococcus oralis Uo5]
 gi|326683381|emb|CBZ00999.1| DNA gyrase, B subunit [Streptococcus oralis Uo5]
          Length = 648

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F+++ L  R++EL+FLN  ++IS+ D+R    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFEKLNKRIQELAFLNRGLRISITDRREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         SK  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L    S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|298491608|ref|YP_003721785.1| DNA gyrase subunit B ['Nostoc azollae' 0708]
 gi|298233526|gb|ADI64662.1| DNA gyrase, B subunit ['Nostoc azollae' 0708]
          Length = 645

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 394/591 (66%), Gaps = 9/591 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L G+   + V
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAGHCTHVEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV+D+GRGIP D+H + G SA E ++T LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  DINADGSVTVTDDGRGIPVDIHPKTGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS ++++ + R+   +   +        L V       TGT +TF P + IF+   
Sbjct: 121 VVNALSEFVEVTVWRDNKEHLQRYERSFPVTELQVKPYKEPRTGTSITFKPDTQIFTISI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+Y TL  RLREL++LN+ V+I   D R     S  PR     YKGGI+ +V+Y++R K
Sbjct: 181 EFDYITLSGRLRELAYLNAGVKIIFTDHRLELLKSDTPRIEIYEYKGGIKEYVAYMNREK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +PL +  I +QG R+N+ ++++++W  D Y +NVL F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QPLHEEIIYVQGERNNVQVEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +   K    K+++ ++ G+  REG T+V+S+K+PDP F  QTK KL ++EVR +V+SF
Sbjct: 301 LNAIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSF 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +LE HP  A  I+ K + A    +AAR AR+L RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLTEYLEFHPSIADAILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP +SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + E+ +LIT
Sbjct: 421 RDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG G+  + FD  +LRYH+I+IMTDADVDGAHIRTLLLTFF+R   +LI  GF+YI  P
Sbjct: 481 ALGLGVKGEEFDSAQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYKRALIEQGFIYIACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PLY + RGK+ +Y   E  L+ ++                 G +    L  
Sbjct: 541 PLYKVERGKNHEYCYSERELQQHIATLPTKANYNIQRFKGLGEMMPEQLWT 591



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 5/160 (3%)

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
           K E+     +    I++      V    +      F +  K   I    I      +  +
Sbjct: 487 KGEEFDSAQLRYHRIVI-MTDADVDGAHIRTLLLTFFYRYKRALIEQGFIYIACPPLYKV 545

Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
               +         L   I ++  +   ++QR+KGLGEM   QLW TT+NP+TR + +V+
Sbjct: 546 ERGKNHEYCYSERELQQHIATLPTKANYNIQRFKGLGEMMPEQLWTTTMNPETRKMKQVE 605

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
           I DA++AD +F+ LMGD V PRREFI+          LDI
Sbjct: 606 IEDAAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLDI 645


>gi|319946623|ref|ZP_08020857.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           australis ATCC 700641]
 gi|319746671|gb|EFV98930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           australis ATCC 700641]
          Length = 649

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 283/657 (43%), Positives = 414/657 (63%), Gaps = 17/657 (2%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++ ++       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEELKQETTGQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIEVFIEADNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F 
Sbjct: 120 SGGLHGVGSSVVNALSTQLDVHVHKNGQIHYQEYKRGQVVADLEVIGET-DRTGTTVHFT 178

Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR  + +     Y+GGI ++V Y
Sbjct: 179 PDPEIFTETTVFDFDKLNKRIQELAFLNRGLRISITDKREGQEQTKDYHYEGGIASYVEY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGELDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYARKNKLLKDNEENLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G + FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++Y
Sbjct: 479 SLFTAMGTGFGAE-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +     + + E      SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEIKEYI--QPGANQEAELAEALERYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
             +  +   +    +  ++ A  +                 ++  R  FI E +E S
Sbjct: 596 LWETTMNPEHRLMARVTVDDAAEADKIFDMLM-------GDRVEPRREFIEENAEYS 645



 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +       L+  +S GR   ++QRYKGLGEM+  QLWETT+NP+
Sbjct: 547 KVGSEIKEYIQPGANQEAE-LAEALER-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 604

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN+  S LD+
Sbjct: 605 HRLMARVTVDDAAEADKIFDMLMGDRVEPRREFIEENAEYSTLDV 649


>gi|304373045|ref|YP_003856254.1| DNA gyrase subunit B [Mycoplasma hyorhinis HUB-1]
 gi|304309236|gb|ADM21716.1| DNA gyrase subunit B [Mycoplasma hyorhinis HUB-1]
 gi|330723339|gb|AEC45709.1| DNA gyrase subunit B [Mycoplasma hyorhinis MCLD]
          Length = 640

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/642 (41%), Positives = 393/642 (61%), Gaps = 12/642 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N +Y+A+SIQ L+GL+ V+KRP MYIG T G   LHH+I+E++DNA+DE+L G+A+ I
Sbjct: 1   MSNQNYEAESIQTLEGLEPVRKRPGMYIGGT-GILPLHHLIWEIVDNAVDEALAGFANTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TV +  DG   VSDNGRGIP  +H +  +SAAEV++T LHAGGKF+  SYKVSGGLHGVG
Sbjct: 60  TVEITTDGYVKVSDNGRGIPVGIHPKHNVSAAEVVLTVLHAGGKFDGSSYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGND-TGTEVTFLPSSDIF 182
            SVVNALS+ LK+ IKR+G +Y   F++ G   + L V  +  +  TGT + F P   I 
Sbjct: 120 ASVVNALSANLKVWIKRDGKLYFQEFVDGGKKIDDLKVIDTVPDFSTGTTIMFKPDFTIM 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            V DF  D +  RL++ ++L  +++   I K      E    + GGI  +VS L +  + 
Sbjct: 180 EVNDFRLDIILDRLKQTAYLTKNLK--FIVKDQRNNFEKEFLFAGGIIDYVSELTKGSEK 237

Query: 243 LMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +  + I  +G     + +   ++A+++       VL +TNNI  ++GGTH +GL  AL+R
Sbjct: 238 VHDNIIYSEGEISTDQYHTKAEIALQYVKEDRSEVLAYTNNIYNREGGTHETGLFDALSR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y  ++   K D+     +D ++G   V+SIK  +P F  QTK KL + EVRSVV  
Sbjct: 298 ILNNYALENKFFKSDQEKFSREDIKDGMYVVVSIKHSNPIFEGQTKGKLNNKEVRSVVNK 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P +A+ I+++ L +   R AA  AR+  +RK   +I SLPGKLADC+
Sbjct: 358 IFSEVFERFLAENPDQARKIIERNLLSQKARKAAESAREAIKRKSPFEINSLPGKLADCT 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D + SEL++VEG+SAGGSAK GR R  QAILPLRGK++N ++  F+K+L ++EI +LI
Sbjct: 418 TKDAQISELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQKTNFEKVLKNEEILSLI 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG + F+INK+RY+KIIIMTDAD DG+HIRTLLLTF +R    LI  GF+YI +
Sbjct: 478 TAFGTGIGAE-FNINKIRYYKIIIMTDADSDGSHIRTLLLTFLYRFFKPLIEYGFVYIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN-FIDDALK 596
           PPLY I+  K + Y   ++  E  +  +  ++++        G ++ + L    +D   +
Sbjct: 537 PPLYKISANKKVVYAYSDKQKEQIIEQEFSNQKVSIQRYKGLGEMNPDQLWETTMDPKTR 596

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
               ++           E+ + + V   +   E N   A  L
Sbjct: 597 KMIQVQIQDAIIASQVFEELMGTDVAPRKLFIEENAKYAKNL 638



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
               + +S+QRYKGLGEMN  QLWETT++P TR +++V+I DA  A  +F  LMG +V P
Sbjct: 564 EFSNQKVSIQRYKGLGEMNPDQLWETTMDPKTRKMIQVQIQDAIIASQVFEELMGTDVAP 623

Query: 788 RREFIQENSLPS-ALD 802
           R+ FI+EN+  +  LD
Sbjct: 624 RKLFIEENAKYAKNLD 639


>gi|300780154|ref|ZP_07090010.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           genitalium ATCC 33030]
 gi|300534264|gb|EFK55323.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           genitalium ATCC 33030]
          Length = 686

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 281/691 (40%), Positives = 393/691 (56%), Gaps = 53/691 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   N  YDA SI IL+GL+AV+KRP MYIG T G  GLHH+++EV+DN++DE++ GY
Sbjct: 1   MAEQQPN--YDASSITILEGLEAVRKRPGMYIGST-GSRGLHHLVWEVVDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD + VTL  DG   V DNGRGIP ++H   G    +V+MT+LHAGGKF+ +SY VSGGL
Sbjct: 58  ADKVEVTLLADGGVQVVDNGRGIPVEMHPS-GAPTVQVVMTQLHAGGKFDSESYAVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IKR+G  +  +F N I    L V G     TGT + F P ++
Sbjct: 117 HGVGISVVNALSTRVEADIKRDGKHWYQNFTNAIP-EEL-VEGDNARGTGTSIRFWPDAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-------------------- 220
           IF   +F+YD +  RL+E++FLN  + I+L D+R  +                       
Sbjct: 175 IFETVEFDYDIIARRLQEMAFLNKGLTITLKDERVSDEELELEAIAEEGDTAQVVEGDSF 234

Query: 221 -------------------------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                    +T  Y  G+  +V+YL+R K  +  + +  +    
Sbjct: 235 ADEDVVDKQEDGDVAPTSKKKREKKVTYHYPNGLVDYVNYLNRTKTAIHPTIVGFEAKGT 294

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           +  +++AM+WN G+ E+V  F N I   +GGTH  G R+ALT  +  Y  +    K    
Sbjct: 295 DHELEIAMQWNGGFKESVHTFANTINTHEGGTHEEGFRAALTSLMNRYAREHKLIKDKDP 354

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ GDDCREG  +V+S+++ DP+F  QTK KL +SE++  V+  VN+ L+ W + +P EA
Sbjct: 355 NLTGDDCREGLAAVISVRVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHLNDWFDANPAEA 414

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K+I+KK + +S  R+AAR+AR+  RRK   D+  LPGKLADC  +DP  SELF+VEGDSA
Sbjct: 415 KVIIKKAVSSSQAREAARKARESVRRKSATDLGGLPGKLADCRSKDPVASELFIVEGDSA 474

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAKQGR    QAILPLRGKILNVE+AR D++LS+ E+  +ITALGTGI  D FDI+KL
Sbjct: 475 GGSAKQGRDSMYQAILPLRGKILNVEKARLDRVLSNNEVQAIITALGTGI-NDEFDISKL 533

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVK 554
           RYHKI++M DADVDG HI TLLLT  +R MP LI +G +++  PPLY +   K    Y  
Sbjct: 534 RYHKIVLMADADVDGQHIATLLLTLLYRLMPELIGDGHVFLANPPLYKLKWHKGEPGYAY 593

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
            +   +  L             D           N  +                +    +
Sbjct: 594 SDAERDAELEEGLNEGRKINTDDGIQRYKGLGEMNPGELWETTLDPENRILRRVELEDAQ 653

Query: 615 QAVISGVFNCESDQEINVSLASKLANRLNFI 645
           +A          D     S  ++ A  + F+
Sbjct: 654 RADELFSILMGDDVAARRSFITRKAKDVRFL 684



 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 6/86 (6%)

Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L+   + GRK I+    +QRYKGLGEMN  +LWETTL+P+ R L RV++ DA +AD+LFS
Sbjct: 602 LEEGLNEGRK-INTDDGIQRYKGLGEMNPGELWETTLDPENRILRRVELEDAQRADELFS 660

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMGD+V  RR FI   +     LD+
Sbjct: 661 ILMGDDVAARRSFITRKAKDVRFLDV 686


>gi|85057535|ref|YP_456451.1| DNA gyrase subunit B [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789640|gb|ABC65372.1| DNA gyrase subunit B [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 671

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 271/673 (40%), Positives = 389/673 (57%), Gaps = 43/673 (6%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+ADSIQIL+GL+AV+KRP MYIG T  + GLHH+++E++DN+IDE+L G+A+ IT+ 
Sbjct: 2   KNYNADSIQILEGLEAVRKRPGMYIGST-AQKGLHHLVWEIVDNSIDEALAGHANNITLE 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +      +VSDNGRGIP D+H + G  A E I+T LHAGGKF+  SYKVSGGLHGVG SV
Sbjct: 61  ILPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDSSSYKVSGGLHGVGASV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QD 186
           VNALS+W  + I+    IY   +  GI  +PL V G   N  GT + FL   +IF     
Sbjct: 121 VNALSNWFTVEIRLNKQIYFQKYEKGIAVSPLEVIGGT-NKRGTTIQFLSDPEIFQETTI 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP-LMQ 245
           +N+DTL+ R+++LSFLN  +++ + DKR  +       ++ G++ ++ +++   K     
Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLKIADKRYEKETVFNFCHEKGLQDYIDFINTSHKQIPFH 239

Query: 246 SPIRIQGSRDNISIDLAMRWND--------------------------GYHENVLCFTNN 279
               ++     ++ ++   +                               + +  F NN
Sbjct: 240 EIFYLEKEAQKLAFEIVFEYTTQLRPTKKDEQGNEIEEKEDKDTIPRYTQSQKIFSFVNN 299

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IP  +GGTH  G + ALTR I+ Y  K F   K    ++ +D  EG T+++S+K  DP+F
Sbjct: 300 IPTHEGGTHEEGFKLALTRVISKYA-KEFNLLKKDEHLLSEDILEGITAIISLKHQDPQF 358

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EVR +      + L  +L EHP +++ I+ K L ++  R AA+RAR++ 
Sbjct: 359 EGQTKAKLANTEVRQITSQLFGEFLEKYLLEHPQDSRKIIDKCLLSANARLAAKRAREVV 418

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           R K  LD      KLADC  +DP  SEL++VEGDSAGGSAKQGR    QAILPLRGK+LN
Sbjct: 419 RNK-PLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVLN 477

Query: 460 VERARFDKMLSSQEIGTLITALGTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           VE++   K+L+++EI +LI A+G GI       F+++K+RYHKIIIMTDADVDGAHIRTL
Sbjct: 478 VEKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNVDKIRYHKIIIMTDADVDGAHIRTL 537

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELF 575
           LLTFFFR    LI  G++Y  +PPLY   +GK   +Y  DE++ + +    SL +     
Sbjct: 538 LLTFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDEKTKQTFANKNSLKDG-FQR 596

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
               G ++ N L         +D   +       K  +           E+DQ  N+ + 
Sbjct: 597 YKGLGEMNPNQLWET-----TMDPENRTLLKASLKDALNALSDEEAL-METDQTFNMLMG 650

Query: 636 SKLANRLNFIAEK 648
            K+  R NFI EK
Sbjct: 651 EKVLPRKNFILEK 663



 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 10/77 (12%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA----------SQADDLFSRLMGDEVE 786
           QRYKGLGEMN +QLWETT++P+ R+LL+  + DA           + D  F+ LMG++V 
Sbjct: 595 QRYKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMGEKVL 654

Query: 787 PRREFIQENSLPSALDI 803
           PR+ FI E +L + LD+
Sbjct: 655 PRKNFILEKALEADLDV 671


>gi|315612864|ref|ZP_07887775.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis ATCC 49296]
 gi|315314974|gb|EFU63015.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis ATCC 49296]
          Length = 648

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 404/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F+++ L  R++EL+FLN  ++IS+ D+R    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFEKLNKRIQELAFLNRGLRISITDRREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G   +      + ++  + ++L         SK  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEFKEYIQPGADQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +        I  G   +I      L    S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEFKEYIQPGADQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|166030882|ref|ZP_02233711.1| hypothetical protein DORFOR_00562 [Dorea formicigenerans ATCC
           27755]
 gi|166029149|gb|EDR47906.1| hypothetical protein DORFOR_00562 [Dorea formicigenerans ATCC
           27755]
          Length = 640

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 251/626 (40%), Positives = 359/626 (57%), Gaps = 17/626 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   ++YDADSI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L G+
Sbjct: 1   MAKN---NTYDADSITVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VTL  DGS T+SDNGRG+P  +H + G+SA  ++ T LHAGGKF+  +YK SGGL
Sbjct: 57  CTEIHVTLEKDGSATISDNGRGVPVGMHAK-GVSAERIVYTTLHAGGKFDDSAYKTSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTF 175
           HGVG SVVNALS+++ +++ R+G I+   +  GI    L        G     TGT+V F
Sbjct: 116 HGVGSSVVNALSAYMDVQVSRDGYIHHDRYERGIPVVELEDGLLPTLGKT-RKTGTKVNF 174

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LP   IF    F  + ++ R+ E ++LN ++ I   D R  EP  I      GI  F+  
Sbjct: 175 LPDDTIFEKTKFKAEEVKSRMHETTYLNPNLTIIFEDLRDTEPEHIVYHEPDGILGFIRE 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+  K+ +   P+  +G  D I +++A ++ + +HEN+L F NNI   +GGTHL+G ++ 
Sbjct: 235 LNAKKESVH-EPVYFKGEADGIEVEVAFQYVNEFHENILGFCNNIYNSEGGTHLTGFKTT 293

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
            T  I  Y  +    K    +  G D R G T+++SIK PDPRF  QTK KL + +    
Sbjct: 294 FTTVINQYARELGILKDKDPNFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNPDASKA 353

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
               V + +  + + +    K ++     A+ +R    +A+     K      S  GKLA
Sbjct: 354 TGKVVGEEIVRFFDRNLETLKNVIGCAEKAAKIRKTEEKAKTNLLTKQKYSFDS-NGKLA 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           +C  RD  K E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI 
Sbjct: 413 NCESRDASKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLANAEIK 472

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           T+I A G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI  G
Sbjct: 473 TMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIQEG 532

Query: 533 FLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
            +YI  PPLY    +    +Y+ D+++LE Y         ++ +     + +       +
Sbjct: 533 HVYIAMPPLYKAMPKKGEEEYLYDDKALEKYRKTHDGPFTLQRYKGLGEMDADQLWETTL 592

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAV 617
           +   ++ KL++        +  E  +
Sbjct: 593 NPKTRLLKLVEIEDGRMASSVTEMLM 618



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 48/69 (69%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTLNP TR L  V+I D   A  +   LMG EV PRR FI E
Sbjct: 572 TLQRYKGLGEMDADQLWETTLNPKTRLLKLVEIEDGRMASSVTEMLMGTEVPPRRAFIYE 631

Query: 795 NSLPSALDI 803
           N+  + LDI
Sbjct: 632 NATEAELDI 640


>gi|332654825|ref|ZP_08420567.1| DNA gyrase, B subunit [Ruminococcaceae bacterium D16]
 gi|332516168|gb|EGJ45776.1| DNA gyrase, B subunit [Ruminococcaceae bacterium D16]
          Length = 650

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 285/653 (43%), Positives = 405/653 (62%), Gaps = 14/653 (2%)

Query: 1   MSDNIQ---------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51
           M++N +            Y    IQ+L+GL+AV+KRP MYIG T  ESGLHH++YE++DN
Sbjct: 1   MAENNELQQLNSTQVEHEYGGSEIQVLEGLEAVRKRPGMYIGSTS-ESGLHHLVYEIVDN 59

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           +IDE+L GY   ITVT+N   + TV+DNGRGIP D+  + G  A EV+ T LHAGGKF  
Sbjct: 60  SIDEALAGYCTDITVTINPGNTITVTDNGRGIPVDIQPQTGRPALEVVFTVLHAGGKFGG 119

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
             YKVSGGLHGVG SVVNALS WL++++ + G IYEM F  G +   + V G   + TGT
Sbjct: 120 GGYKVSGGLHGVGASVVNALSEWLEVQVHKNGEIYEMKFSRGKITQEMKVVGKTDH-TGT 178

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            VTF P  ++F   ++NY+TL  R+RE +FLN+ ++I  +D R  + +E  M Y+GGI  
Sbjct: 179 TVTFKPDPEMFDTLEYNYETLHTRMREEAFLNAGLRIQTVDLRPGQEKEDDMCYEGGIRE 238

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV++++R+K P+    I + G+R++   ++AM++NDGY E ++ F NN+   +GG H  G
Sbjct: 239 FVTFINRNKTPIHDGVIYMSGAREDSMAEIAMQYNDGYQEVMVSFANNVHTPEGGMHEEG 298

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALT  + +Y  K    K +   V GDDCREG T V+S+K+ + +F  QTK KL ++E
Sbjct: 299 FRRALTNTLNAYGRKIGVLK-NDDKVSGDDCREGLTCVISVKLTEAQFEGQTKAKLGNAE 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +R++V S V++ L  +LEE+P   K+I++K + A+  R+AAR+AR+  RRK  L  A++P
Sbjct: 358 IRTLVNSVVSEKLEIFLEENPKVGKLILEKAMMANRAREAARKARESIRRKTALGGAAMP 417

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
            KL DC+E +P+ +EL++VEGDSAGGSA QGR    QAILPL GK+LNVE+AR DK+  +
Sbjct: 418 DKLRDCNEANPELTELYIVEGDSAGGSATQGRDSRFQAILPLWGKMLNVEKARADKVYGN 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            ++  +ITALG GIG D FD+NKLRYHK+IIM DADVDGAHIRTLLLTFFFR M  LI N
Sbjct: 478 DKLTPVITALGAGIG-DDFDLNKLRYHKVIIMADADVDGAHIRTLLLTFFFRFMRPLIDN 536

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++Y   PPLY +T+GK+ +    +E  +                 ++         + +
Sbjct: 537 GYVYAAVPPLYKLTKGKTTRVAFSDEERDKISAELRGDNPNAKVIINRYKGLGEMDPHEL 596

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                +D   +          +    I  +   E  +     +       +N 
Sbjct: 597 -WETTMDPEKRTLKRIELDDAVRADEIFTLLMGEKVEPRREYIQENAKKAVNL 648



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 55/68 (80%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           + RYKGLGEM+  +LWETT++P+ R+L R+++ DA +AD++F+ LMG++VEPRRE+IQEN
Sbjct: 582 INRYKGLGEMDPHELWETTMDPEKRTLKRIELDDAVRADEIFTLLMGEKVEPRREYIQEN 641

Query: 796 SLP-SALD 802
           +     LD
Sbjct: 642 AKKAVNLD 649


>gi|291280736|ref|YP_003497570.1| DNA topoisomerase II, B subunit [Deferribacter desulfuricans SSM1]
 gi|290755438|dbj|BAI81814.1| DNA topoisomerase II, B subunit [Deferribacter desulfuricans SSM1]
          Length = 643

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 250/639 (39%), Positives = 373/639 (58%), Gaps = 10/639 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y    I +LKGL+ V+KRP MYIG TD   GLHH+++EV+DN+IDE+  GY   I
Sbjct: 1   MSQKTYTEKDIIVLKGLEPVRKRPGMYIGSTDN-KGLHHLLWEVVDNSIDEATAGYCSEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            +TL+ D S TV DNGRGIP   H E  IS  EV++T LHAGGKF  K YK SGGLHGVG
Sbjct: 60  EITLHKDYSVTVKDNGRGIPVGPHPELKISTLEVVLTTLHAGGKFENKIYKASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSDIF 182
           +SVVNALS +L++ +KR GN+Y  ++  G     L    TG   NDTGT + FLP   IF
Sbjct: 120 ISVVNALSEYLEVYVKRNGNLYYQTYSKGQKQQELQILKTGLNPNDTGTTIHFLPDKTIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F    ++ RL+ELS+LN  ++I  I++   +P+ I    + G+E   S   ++   
Sbjct: 180 KTTKFQPTIIEQRLQELSYLNKGLKIIFINELEEKPKTIVFLSEKGLEEMFSVKTKNFTY 239

Query: 243 LMQSPIRIQG---SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           L  +PI I+      D     +     + Y + +  + NNIP  + GTH+ G ++AL++ 
Sbjct: 240 LF-NPIYIEDKNKEHDLQITCIFGFLQNYYDQTIYSYVNNIPTHEHGTHVDGFKNALSKI 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
              Y  K+      K  +  +D REG  S++S+K+ +P F  QTK KL + EV+ +V + 
Sbjct: 299 FNKY--KNTLKLNGKYKITSEDIREGLYSIISVKVINPEFEGQTKNKLGNKEVKEIVSNI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  + + +    K+  +K L+    R+AAR+A++  RRK V + ++LPGKLADCS 
Sbjct: 357 IVEHLEKYFDINQQAFKLWYQKTLNTVQAREAARKAKETVRRKNVFETSTLPGKLADCSS 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ +K+ELF+VEGDSAGGSAKQ R++E QA+LPL+GKI+NVE+A   K+L ++E+  LIT
Sbjct: 417 KNVEKTELFIVEGDSAGGSAKQSRNKEFQAVLPLKGKIINVEKAYLVKLLENEEVKNLIT 476

Query: 480 ALGTGI-GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           A+G  +  +  F ++ LRY KIIIMTDADVDGAHI TLLLTFF++ +P +I  G L+I +
Sbjct: 477 AIGVNVDKKGKFYVDNLRYGKIIIMTDADVDGAHITTLLLTFFYKYLPEIITQGKLFIAQ 536

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I       Y+KD+  LE +     ++   +     +      ++         ++
Sbjct: 537 PPLYKIRYKNKDYYIKDDYELEQFKKINKINSLEQENVQIQRFKGLGEMNPEQLWETTMN 596

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
              ++        F     I  +   ++ +E    + + 
Sbjct: 597 PNTRNLIQVEISDFEAANNIFSILMGKNIKERKEFIENY 635



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRIARGVQEQFVLE 678
           + N E    + +    ++ N +  I    +K     ++N     ++      V    +  
Sbjct: 454 IINVEKAYLVKLLENEEVKNLITAIGVNVDKKGKFYVDNLRYGKIIIMTDADVDGAHITT 513

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-----LDTIFSIGRKG 733
               F +    + I   ++      +  +        I     L     ++ I S+ ++ 
Sbjct: 514 LLLTFFYKYLPEIITQGKLFIAQPPLYKIRYKNKDYYIKDDYELEQFKKINKINSLEQEN 573

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +QR+KGLGEMN  QLWETT+NP+TR+L++V+I+D   A+++FS LMG  ++ R+EFI+
Sbjct: 574 VQIQRFKGLGEMNPEQLWETTMNPNTRNLIQVEISDFEAANNIFSILMGKNIKERKEFIE 633

Query: 794 ENSLPSALD 802
             +  + +D
Sbjct: 634 NYATYANID 642


>gi|315640722|ref|ZP_07895824.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus italicus DSM
           15952]
 gi|315483477|gb|EFU73971.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus italicus DSM
           15952]
          Length = 668

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 273/671 (40%), Positives = 389/671 (57%), Gaps = 18/671 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +++ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DNA+DE+L GY D I
Sbjct: 3   KKSNEYNDASIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEVVDNAVDEALSGYGDEI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ DGS +V D GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 62  KVIIHKDGSISVQDFGRGMPVGMH-TSGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS WL++RI R+G  Y   F+N G  +  L   G      GT V FLP   IFS
Sbjct: 121 ASVVNALSEWLEVRIVRDGIEYRQRFVNGGHPEGTLEKIGKTKEKNGTTVRFLPDKGIFS 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+YDTL  RLRE +FL   V+IS  D R  +  E    Y+ GI+ FV YL+  K  L
Sbjct: 181 TTKFSYDTLAERLRESAFLLRGVKISFTDLREDDK-EDVFHYEEGIKEFVEYLNEEKDVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I   G ++ I +++A+++NDG+ E +L F NN+  KDGGTH +G+++ALT+ +  Y
Sbjct: 240 TP-IIYFSGEKEMIEVEVALQYNDGFSETILSFVNNVRTKDGGTHEAGMKAALTKALNEY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVN 361
             K    K+  R++ G D REG +SVLSI++P+   +F  QTKEKL +   R+ V++ ++
Sbjct: 299 ARKVGLLKEKDRNLEGSDFREGLSSVLSIRVPEHLLQFEGQTKEKLGTPAARTAVDNAIS 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           + L  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL     
Sbjct: 359 EQLGFYLQENNEISQLLVRKAIKAREAREAARKAREESRNGKKKKKGESLLSGKLTPAQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I 
Sbjct: 419 KNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIY 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  P
Sbjct: 479 TIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRNFIDDALK 596
           PLY +++G   + V +    ++ L   +       +       G ++ + L         
Sbjct: 538 PLYKVSKGTGKKEVIEYAWTDEELQTVTEKVGRGYMLQRYKGLGEMNADQLWET-----T 592

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
           +D   +           +          +  +     + S +   L       +      
Sbjct: 593 MDPETRTLVQVRIDDPAQAERRVTTLMGDKVEPRRKWIESHVQFSLEEDGSLLDSVEEKP 652

Query: 657 INNSDILVKRI 667
           +N     V+ I
Sbjct: 653 VNRPAYSVEDI 663



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++              ++      S  +          ++   ++     
Sbjct: 376 VRKAIKAREAREAARKAREESRNGKKKKKGESLLSGKLTPAQSKNPKKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 436 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K ++    
Sbjct: 496 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKEVIEYA 555

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L T+     +G  +QRYKGLGEMNA QLWETT++P+TR+L++V+I D +QA+   
Sbjct: 556 WTDEELQTVTEKVGRGYMLQRYKGLGEMNADQLWETTMDPETRTLVQVRIDDPAQAERRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+ +
Sbjct: 616 TTLMGDKVEPRRKWIESH 633


>gi|307708511|ref|ZP_07644976.1| DNA gyrase, B subunit [Streptococcus mitis NCTC 12261]
 gi|307615427|gb|EFN94635.1| DNA gyrase, B subunit [Streptococcus mitis NCTC 12261]
          Length = 648

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F+P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFIP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRAKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L    S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRAKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|229174259|ref|ZP_04301792.1| DNA topoisomerase 4 subunit B [Bacillus cereus MM3]
 gi|228609116|gb|EEK66405.1| DNA topoisomerase 4 subunit B [Bacillus cereus MM3]
          Length = 654

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 268/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N GI    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGIPATTLEKIGKTK-ESGTTIHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y KI+IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKIVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631


>gi|145631753|ref|ZP_01787514.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|144982614|gb|EDJ90160.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
          Length = 483

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 282/483 (58%), Positives = 359/483 (74%), Gaps = 4/483 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDK +     G +   
Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKNVVFPRSGHINYC 476

Query: 481 LGT 483
              
Sbjct: 477 FRL 479


>gi|148821196|ref|YP_001285950.1| DNA gyrase subunit B [Mycobacterium tuberculosis F11]
 gi|148719723|gb|ABR04348.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis F11]
          Length = 714

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA 
Sbjct: 44  KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 102

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SGGLHG
Sbjct: 103 TVNVVLLEDGGVEVADDGRGIPVATHAS-GILTVDVVMTQLHAGGKFDSDAYAISGGLHG 161

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F
Sbjct: 162 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 219

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              +++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 220 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 279

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+
Sbjct: 280 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 339

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 340 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 399

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AA
Sbjct: 400 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 459

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILP
Sbjct: 460 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 519

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG H
Sbjct: 520 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 578

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           I TLLLT  FR M  LI NG +++ +PPLY +   +S       +   D L+   L    
Sbjct: 579 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 638

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 639 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 686



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 629 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 687

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLDV 714


>gi|291548764|emb|CBL25026.1| DNA gyrase subunit B [Ruminococcus torques L2-14]
          Length = 644

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 293/585 (50%), Positives = 394/585 (67%), Gaps = 5/585 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L GY D I V
Sbjct: 9   DAEYGADQIQILEGLEAVRKRPGMYIGSTS-VRGLHHLVYEIVDNAVDEALAGYCDKIQV 67

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N D S TV+DNGRGIP  ++ + G+ A EV+ T LHAGGKF    YKVSGGLHGVG S
Sbjct: 68  DINKDNSITVTDNGRGIPVGINHKAGLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 127

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL++ I  EG IY+  +  G +   L V         GT+VTFLP  +IF   
Sbjct: 128 VVNALSEWLEVEIANEGKIYKQRYERGKVCYKLRVDRDCEPEMRGTKVTFLPDKEIFEET 187

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+Y+TL+ R RE++FL   ++I L D R  E  E    Y+GGI+ FV+YL++ K  L +
Sbjct: 188 VFDYNTLKQRFREMAFLTKGLKIHLRDLREEEIHEHIFHYEGGIKEFVTYLNKSKTALYE 247

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +G +DN+++++AM+ ND Y+E    F NNI   +GGTH++G RSALT+    Y +
Sbjct: 248 QIIYCEGMKDNVAVEVAMQHNDSYNETTYGFVNNITTPEGGTHIAGFRSALTKVFNDYGK 307

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K++++ + G+D REG T+++S+K+ DP+F  QTK+KL +SE R  V++ V   L 
Sbjct: 308 KNKLLKENEQ-LSGEDIREGLTAIVSVKIEDPQFEGQTKQKLGNSEARGAVDNIVRTQLE 366

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE++P  AK+I++K + A   R+AAR+ARDLTRRK  L+  SLPGKLADCS++DP K 
Sbjct: 367 IFLEQNPSVAKMIIEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPSKC 426

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK  R R  QAILPLRGKILNVE+AR DK+  + EI  +ITA GTGI
Sbjct: 427 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGI 486

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
            +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G++Y+ +PPLY + 
Sbjct: 487 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKLE 545

Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589
           + K + Y   ++ L   L                 G +    L  
Sbjct: 546 KNKKVWYAYSDDELNQILTEVGRDSNNKIQRYKGLGEMDAEQLWE 590



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706
            G   + DI   R  + +      ++G+ I +    +  R   + I+E Y+      +  
Sbjct: 484 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYK 543

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           L  N           L   +  +GR   + +QRYKGLGEM+A QLWETT++P+ R LLRV
Sbjct: 544 LEKNKKVWYAYSDDELNQILTEVGRDSNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRV 603

Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + D +  + D  F+ LMGD+VEPRREFI+EN+     LDI
Sbjct: 604 TMDDETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLDI 644


>gi|70725006|ref|YP_251920.1| DNA gyrase subunit B [Staphylococcus haemolyticus JCSC1435]
 gi|68445730|dbj|BAE03314.1| DNA gyrase (topoisomerase II) subunit B [Staphylococcus
           haemolyticus JCSC1435]
          Length = 644

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 300/640 (46%), Positives = 416/640 (65%), Gaps = 6/640 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   GS  + TGT + F   S+I
Sbjct: 125 GVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKADSEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  + I+L D+R   E RE T  Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQKRIRELAFLNKGISITLRDEREDVEQREDTYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+ + PI I  ++D++ I++AM++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHEEPIYIHQTKDDVEIEIAMQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTRI 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY  +S   K DK  + G+D REG T+V+SIK  DP+F  QTK KL +SEVR +V+  
Sbjct: 304 LNSYGTQSKIIKDDKERLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             +    +L EHP  A+I+V+K + AS  R AA++AR++TRRK  L+I+SLPGKLADCS 
Sbjct: 364 FAEHFERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++SE+FLVEGDSAGGS K+GR  + QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KKPEESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKID 598
           PLY + +GK   YV ++  L+      S +           G ++ + L     +     
Sbjct: 543 PLYKLAQGKQKYYVFNDRELDKLKSELSPTPKWQISRYKGLGEMNADQLWETTMNPENRM 602

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            L        +     + ++  V         + ++ + L
Sbjct: 603 MLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANL 642



 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 32/280 (11%)

Query: 550 LQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
            +++ +  ++   ++ + + +    +       +++      I              P  
Sbjct: 369 ERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKKPEE 428

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI----------- 657
            + F+ +   +G    E       ++       LN    + ++  + +            
Sbjct: 429 SEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTG 488

Query: 658 --NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-KRIFSNRIEENYLTIL-----SLI 708
                DI   R  + V      ++G+ I +    +  R     IE  Y+ I       L 
Sbjct: 489 IGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLA 548

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTLNPDTRSL 762
               K  +      LD + S     +S      + RYKGLGEMNA QLWETT+NP+ R +
Sbjct: 549 QGKQKYYVFNDRE-LDKLKSE----LSPTPKWQISRYKGLGEMNADQLWETTMNPENRMM 603

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           L+VK+ DA +AD  F  LMGD VE RR+FI++N++ + LD
Sbjct: 604 LQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLD 643


>gi|269314033|gb|ACZ36918.1| DNA gyrase B [Mycobacterium bolletii]
 gi|269314039|gb|ACZ36921.1| DNA gyrase B [Mycobacterium massiliense]
          Length = 651

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 265/643 (41%), Positives = 377/643 (58%), Gaps = 37/643 (5%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA  + VT+ 
Sbjct: 1   YSADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATTVEVTML 59

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DG   V D+GRGIP  +H   GI   +V+MT+LHAGGKF+  SY VSGGLHGVG+SVVN
Sbjct: 60  ADGGIQVKDDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS+ L++ I R+G  ++  +        L   G+A   TGT V F    +IF    +++
Sbjct: 119 ALSTKLEVEILRDGFEWQQVYTRSEP-GTLQK-GAATKKTGTTVRFWADPEIFETTTYDF 176

Query: 190 DTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEPR 219
           +T+  RL+E +FLN  + I L D+R                                + +
Sbjct: 177 ETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQAAESSAPHKVK 236

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y  G+  FV +++R K  +  + +   G  +   +++AM+WN GY E+V  F N 
Sbjct: 237 NRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVEIAMQWNAGYSESVHTFANT 296

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +V+S+K+ +P+F
Sbjct: 297 INTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVGEPQF 356

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L  W + +P +AK +V K + ++  R AAR+AR+L 
Sbjct: 357 EGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKARELV 416

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 417 RRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIIN 476

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG HI TLLLT
Sbjct: 477 VEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTLLLT 535

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             FR M  L+ +G +++ +PPLY +   ++       +   D L+   L    ++  D  
Sbjct: 536 LLFRFMRPLVEHGHIFLAQPPLYKLKWQRTQPEFAYSDRERDGLMEAGLKAGKKINKDDG 595

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
             I +      +D     +  +        +  ++ A  +   
Sbjct: 596 --IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 636



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 5/74 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           L++     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 579 LMEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 637

Query: 778 SRLMGDEVEPRREF 791
           S LMG++VE RR F
Sbjct: 638 SILMGEDVEARRSF 651


>gi|199598229|ref|ZP_03211650.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001]
 gi|199590832|gb|EDY98917.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001]
          Length = 653

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 280/630 (44%), Positives = 405/630 (64%), Gaps = 10/630 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YDA  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A  I V +N
Sbjct: 19  YDASQIQVLSGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATRIEVEVN 77

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D S TV+D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGVG  VVN
Sbjct: 78  PDNSVTVTDDGRGIPVDIQAKTGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGALVVN 137

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFN 188
           ALS+ L + + R G  Y + F+ G ++ P+   G A  ++ GT+V F P  DIF+     
Sbjct: 138 ALSTNLDVTVVRGGKRYYIDFVRGKVNTPMKELGPAPEHEHGTKVHFQPDPDIFTETTTF 197

Query: 189 YDTLQ-HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            D +   R+REL+FLN  ++++  DKR+    ++   Y+GG++++V +L + K+ L+Q P
Sbjct: 198 DDKVLTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGLKSYVDFLTKKKENLLQEP 257

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I ++G    I++++A+++ + YH  +L F NNI   +GGTH +G ++ALTR I  Y  +S
Sbjct: 258 IYVEGQDKGITVEVALQYTNDYHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRS 317

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K     + GDD REG T+V+S+K PDP+F  QTK KL +S+ R+VV+   +D  + +
Sbjct: 318 GALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKF 377

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L EHP + K+I+ K + AS  R AA+RAR++TR+K  L+I++LPGKLAD + +DP+ SEL
Sbjct: 378 LMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISEL 437

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSAK GRSR  QAILP+RGKILNVE+A  +++L+++EI TL TA+GTG G 
Sbjct: 438 FIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGFG- 496

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
             FDI+K RYHK+IIMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PPLY + +G
Sbjct: 497 QDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQG 556

Query: 548 KSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           K ++Y+  +E L+D L     S +         G +  + L         +D   +    
Sbjct: 557 KMMRYIDSDEELQDILGQLPPSPKPDIQRYKGLGEMDASQLWET-----TMDPDTRRLLR 611

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              K   +   I  +   +  +     +  
Sbjct: 612 VSPKDAEQADGIFEMLMGDHVEPRRKFIEE 641



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 56/71 (78%), Gaps = 3/71 (4%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ASQLWETT++PDTR LLRV   DA QAD +F  LMGD VEPRR+FI+EN
Sbjct: 583 IQRYKGLGEMDASQLWETTMDPDTRRLLRVSPKDAEQADGIFEMLMGDHVEPRRKFIEEN 642

Query: 796 SLPS---ALDI 803
           ++      +D+
Sbjct: 643 AVFVDPNNIDV 653


>gi|313893498|ref|ZP_07827068.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441941|gb|EFR60363.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412]
          Length = 633

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 306/585 (52%), Positives = 417/585 (71%), Gaps = 4/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A +IQ+L+GLDAV+KRP MYIG T    GLHH++YEV+DN++DE+L GYA  I
Sbjct: 1   MPEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSVDEALAGYATHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF    YKVSGGLHGVG
Sbjct: 60  EVSINPDNSITVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS W K+++ + G + E+SF  G   + L   G A   TGT V F P ++IF  
Sbjct: 119 ISVVNALSKWTKVQVAQNGIVQEISFARGNKTSELHEIGKAE-GTGTTVIFKPDAEIFET 177

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++DTL+ RL+EL+FLN  ++I+L D R  EPR  +  Y+GG+ +F+++L+ +K+ + 
Sbjct: 178 TVFSFDTLKMRLQELAFLNKGLRITLSDLRQEEPRVESFHYEGGLSSFITFLNENKEVVN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            + I I+ ++D++ +D+A+++ND Y EN+L F NNI   DGGTHLSG R+ALTR +  Y 
Sbjct: 238 PTVINIENTKDDVVVDVALQYNDTYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYG 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K+++ ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEV+ + +  V+DGL
Sbjct: 298 RKAGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSDGL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + EEHP +AK I++K   AS  R+AAR+ARDLTRRK  L+I+SLPGKLADCSE+D   
Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEISSLPGKLADCSEKDTSM 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG
Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY I
Sbjct: 478 IGEE-FDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +GKS  YV  +  L   L                G ++   L  
Sbjct: 537 KKGKSQWYVYSDAELAAKLDEVGREGIAIQRYKGLGEMNPEQLWE 581



 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 4/202 (1%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +        +   + N E  +   +   +++ + +        + +  + +  +
Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGEEFDITKSRYN 490

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
            ++      V    +      F +      +    I      +  +     +  +     
Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQIKKGKSQWYVYSDAE 550

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L   +  +GR+GI++QRYKGLGEMN  QLWETT+NP+ R++L+V + D+ +AD +F+ LM
Sbjct: 551 LAAKLDEVGREGIAIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVLM 610

Query: 782 GDEVEPRREFIQENSLPS-ALD 802
           GD+VEPRR+FI++N+     LD
Sbjct: 611 GDKVEPRRKFIEDNAKYVRNLD 632


>gi|322392250|ref|ZP_08065711.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           peroris ATCC 700780]
 gi|321144785|gb|EFX40185.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           peroris ATCC 700780]
          Length = 648

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 283/626 (45%), Positives = 408/626 (65%), Gaps = 9/626 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+++I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEDIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIEVFIEPDDSITVIDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLKVIGDT-DKTGTIVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVKYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLLENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      S ++  + ++L         SK  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGSEQETRLQEAL--ARYSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMNPEHRLMARVSVDDAAEADRI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G + + T     L   +S GR   ++QRYKGLGEM+  QLWETT+NP+
Sbjct: 546 KVGSEIKEYIQPGSEQE-TRLQEALAR-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADRIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|262200051|ref|YP_003271259.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247]
 gi|262083398|gb|ACY19366.1| DNA gyrase, B subunit [Gordonia bronchialis DSM 43247]
          Length = 685

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 279/657 (42%), Positives = 379/657 (57%), Gaps = 40/657 (6%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA  + VTL
Sbjct: 19  EYSADSISILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYASKVEVTL 77

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V D+GRGIPTD+H   G    EV+MT+LHAGGKF+  +Y VSGGLHGVG+SVV
Sbjct: 78  LEDGGVEVVDDGRGIPTDMHA-TGSPTVEVVMTQLHAGGKFDSDAYAVSGGLHGVGISVV 136

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ ++L I   G  +E ++ +     PL   G A   TGT V F P  +IF    F+
Sbjct: 137 NALSTKVELEINYGGFHWEQTYDHAKPQ-PLEK-GDATRKTGTLVRFWPDPEIFETTVFS 194

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR--------------------------------SP 216
            +T+  RL+E++FLN  + I+L DKR                                  
Sbjct: 195 AETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDESVADAAETVKTEEEKKADA 254

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +P+  T  Y  G+  ++ +L+R K+P+  S I          +++AM+WN GY E+V  F
Sbjct: 255 KPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVIGFTAKGTGHEVEIAMQWNAGYSESVHTF 314

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S+K+ D
Sbjct: 315 ANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLAAVISVKVGD 374

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL ++EV+  V+   N+ L+ W E +P EAKII+KK +D+S  R AAR+AR
Sbjct: 375 PQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAEAKIIIKKAVDSSQARLAARKAR 434

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAILPLRGK
Sbjct: 435 ELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAILPLRGK 494

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           I+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++M DADVDG HI TL
Sbjct: 495 IINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTL 553

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELF 575
           LLT  FR M  LI +G +Y+ +PPLY +   K   ++   +   +  L     +      
Sbjct: 554 LLTLLFRFMRPLIEHGHVYLAQPPLYKLKWQKREPEFAYSDRERDGLLEAGRTAGWKINT 613

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
            D           N  +                  T  + A    +F+    +++  
Sbjct: 614 DDGIQRYKGLGEMNAKELWETTMDPEVRVLRQV--TLDDAAAADELFSILMGEDVAA 668



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA +LWETT++P+ R L +V + DA+ AD+LFS LMG++V  RR FI  N
Sbjct: 617 IQRYKGLGEMNAKELWETTMDPEVRVLRQVTLDDAAAADELFSILMGEDVAARRSFIARN 676

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 677 AKDVRFLDV 685


>gi|310825640|ref|YP_003957997.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612]
 gi|308737374|gb|ADO35034.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612]
          Length = 640

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 300/646 (46%), Positives = 428/646 (66%), Gaps = 10/646 (1%)

Query: 1   MSDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MSDN++N  + Y AD IQ+L+GL+AV+KRP MYIG T G+ GLHH++YEV+DN+IDE+L 
Sbjct: 1   MSDNLKNEKNDYTADQIQVLEGLEAVQKRPGMYIGST-GKQGLHHLVYEVVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ +   TV D+GRGIPTD++ +   +  E+ +T LHAGGKF    YKVSG
Sbjct: 60  GYCKNIVVTIDKNNGITVVDDGRGIPTDMNHKMKKTGVELALTVLHAGGKFGGGGYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALSS L + +K+   IY  +F  G   + L VTG+      T V F P 
Sbjct: 120 GLHGVGVSVVNALSSELTVEVKQNKKIYHQTFAKGKKTSELEVTGNTNRTG-TTVHFQPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            DIF    +++D L+HRLREL+FLN  V I+L D+R  E R+ T  Y+GGI +++ Y+++
Sbjct: 179 PDIFDELVYDFDVLEHRLRELAFLNKGVSITLADEREAEKRKETYCYEGGIRSYIEYMNK 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K PL +     +   D+ S+++A ++  GY EN+  + NNI   +GG+HL+G +SALTR
Sbjct: 239 NKDPLYEQIAYYEKEMDDYSLEIAFQYTAGYSENIYSYANNIYTPEGGSHLNGFKSALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y  K+   K + +++ G+D REG T+++SIK+ DP+F  QTK KL + EV+ +VE+
Sbjct: 299 TINTYARKNNYIKGNDKNLTGEDVREGLTAIISIKLLDPQFEGQTKTKLGNPEVKGIVET 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D LSA+LEE+P  AK +++K L AS  R+AA++AR+LTRRK  LD  +LPGKLADC 
Sbjct: 359 IVGDELSAFLEENPTIAKTVIEKTLSASRAREAAKKARELTRRKSALDTTALPGKLADCR 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SE+F+VEGDSAGGSAK GR    QAILPLRGKILNVE++R D++L++  + ++I
Sbjct: 419 EKDPSMSEIFIVEGDSAGGSAKSGRDSRIQAILPLRGKILNVEKSRLDRILTADTLKSMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTG+G+D F++ K RYHKIIIMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 479 TAFGTGVGED-FNVEKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRGLIEEGYVYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPL+ + RG+ ++YV +E++L+    ++  S+         G +  + L         +D
Sbjct: 538 PPLFKVARGQHVEYVYNEKALDKMFEDKDRSKYTIQRYKGLGEMDAHQLWET-----TMD 592

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             ++     + +       +  +   +  Q     +    A   N 
Sbjct: 593 PSVRILNRVNIEDAAYADEVFTILMGDKVQPRKEFIERNAAKVKNL 638



 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 11/189 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   +  A  L + +        + ++        ++      V    +   +
Sbjct: 457 ILNVEKSRLDRILTADTLKSMITAFGTGVGEDFNVEKARYHKIIIMTDADVDGAHI--RT 514

Query: 681 SIFSFGSKYKRIFSNRIEENY----LTILSLICNGDKIKITGPCSLLDTIFSIG-RKGIS 735
            + +F  +Y R     IEE Y       L  +  G  ++       LD +F    R   +
Sbjct: 515 LLLTFFYRYMR---GLIEEGYVYIAQPPLFKVARGQHVEYVYNEKALDKMFEDKDRSKYT 571

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P  R L RV I DA+ AD++F+ LMGD+V+PR+EFI+ N
Sbjct: 572 IQRYKGLGEMDAHQLWETTMDPSVRILNRVNIEDAAYADEVFTILMGDKVQPRKEFIERN 631

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 632 AAKVKNLDI 640


>gi|116333451|ref|YP_794978.1| DNA topoisomerase IV subunit B [Lactobacillus brevis ATCC 367]
 gi|116098798|gb|ABJ63947.1| DNA topoisomerase IV subunit B [Lactobacillus brevis ATCC 367]
          Length = 655

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 259/597 (43%), Positives = 363/597 (60%), Gaps = 14/597 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       YD  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKAKPK--YDDSSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S TV D+GRG+P  +H   GI   EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GKEINVTIHQDNSITVVDHGRGMPVGMHAS-GIPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSS L + I R+G  Y+  F   G     L   G+     GT + F P S
Sbjct: 117 HGVGASVVNALSSSLTVTIVRDGVRYQEKFAKGGHPQGTLKKLGNTRAHNGTTIDFKPDS 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF+   +N+ TL  RLRE +FL   V+I+L D+R  + R     ++ GI+ FVSYL+  
Sbjct: 177 QIFTTTVYNFGTLAERLRESAFLLKGVKITLTDEREGQERTEEYHFESGIKEFVSYLNED 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  +   +   GS+D I +++A ++NDGY EN+L F NN+  KDGG+H +G+RS  T+ 
Sbjct: 237 -KDTLGDIMYFDGSKDGIEVEVAAQYNDGYTENLLSFVNNVRTKDGGSHEAGMRSGWTKA 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG ++V+S+++P+   +F  QTKEKL + E R++V+
Sbjct: 296 FNEYARKVGLLKERDKNLEGTDVREGLSAVISLRVPEDLLQFEGQTKEKLGTPEARTIVD 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S +++ L  +L E+    K+++KK   A   R+AAR+ARD     ++       L GKL 
Sbjct: 356 SIISEQLGYYLMENGDFGKMLIKKSTQARQAREAARKARDESRNGKRHKKHERLLSGKLT 415

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++  K+ELFLVEGDSAGGSAKQGR+R+ QAILPLRGK+LN E+A+   ++ ++EI 
Sbjct: 416 PAQSKNAAKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLPDIMKNEEIS 475

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F+I    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +Y
Sbjct: 476 TMIYTIGAGVG-TEFNIEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDAGRIY 534

Query: 536 IIKPPLYGITRGKS---LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY I +      ++Y    + L +     +            G +    L  
Sbjct: 535 IALPPLYRIQKTGKKPTIEYAWTNDELNEKTKKIANHGYHLQRFKGLGEMDAEQLWE 591



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 377 IKKSTQARQAREAARKARDESRNGKRHKKHERLLSGKLTPAQSKNAAKNELFLVEGDSAG 436

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    +++  +  I       ++    N 
Sbjct: 437 GSAKQGRNRKFQAILPLRGKVLNTEKAKLPDIMKNEEISTMIYTIGAGVGTEFNIEDANY 496

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--- 717
           D ++           +      F +      I + RI      +  +   G K  I    
Sbjct: 497 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDAGRIYIALPPLYRIQKTGKKPTIEYAW 556

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
               L +    I   G  +QR+KGLGEM+A QLWETT++PD R+L+RV+I DA+ A+   
Sbjct: 557 TNDELNEKTKKIANHGYHLQRFKGLGEMDAEQLWETTMDPDNRTLIRVQIDDAALAERRV 616

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+ N
Sbjct: 617 TTLMGDKVEPRRKWIESN 634


>gi|253580826|ref|ZP_04858089.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847896|gb|EES75863.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 664

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 254/626 (40%), Positives = 363/626 (57%), Gaps = 15/626 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +D  + ++YDA SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY 
Sbjct: 22  TDMAKKNTYDAGSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYC 80

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            +I V L  DGSCTV+DNGRGIP D+H++ G+SA  ++ T LHAGGKF+  +YK SGGLH
Sbjct: 81  SLIHVILEKDGSCTVTDNGRGIPVDMHEK-GVSAERLVFTTLHAGGKFDNSAYKTSGGLH 139

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFL 176
           GVG SVVNALS++L ++I R+G ++   +  GI    L        G     TGT + FL
Sbjct: 140 GVGSSVVNALSTYLDIKISRDGYVHHDHYERGIPTIELEEGLLPKLGKT-RQTGTSINFL 198

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P  +IF    F+   ++ RL E ++LN  + I   DKR  E  +IT     GI  F+  L
Sbjct: 199 PDPEIFEKTRFSATEVKSRLHETAYLNPELTIRFEDKRGAEVEDITYHEPDGIIGFIKDL 258

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +   + L   P+ ++G  D I +++A ++ + + ENVL F NNI   +GGTHL+G ++  
Sbjct: 259 NHSAEVLH-DPVYLKGEADGIQVEVAFQFTNEFRENVLGFCNNIYNAEGGTHLTGFKTTF 317

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T  + +Y  +    K    +  G D R G T+V+SIK P+PRF  QTK KL + +     
Sbjct: 318 TTVMNTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPEPRFEGQTKTKLDNQDASRAT 377

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
              V + +  + + +    K I+     A+ +R    RA+     K      S  GKLA+
Sbjct: 378 GKVVGEQMVLYFDRNLETLKTILSCAEKAAKIRKTEERAKTNLLTKQKYSFDS-NGKLAN 436

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ++DP + E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T
Sbjct: 437 CEKKDPSQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKVLANAEIKT 496

Query: 477 LITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +I A G G  +   + FDI KLRY KI+IM DADVDGAHI TLLLT F+R MP LI  G 
Sbjct: 497 MINAFGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPDLITEGH 556

Query: 534 LYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN-FI 591
           +YI  PPLY +  +    +Y+ D+++LE Y                 G +    L    +
Sbjct: 557 VYIAMPPLYKVMPKKGQEEYLYDDKALERYRRAHKPGSFTLQRYKGLGEMDAEQLWETTL 616

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAV 617
           +   ++ K ++        +  E  +
Sbjct: 617 NPETRMMKRVEIEDARLASSVTEILM 642



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 52/69 (75%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTLNP+TR + RV+I DA  A  +   LMG +V PR++FI E
Sbjct: 596 TLQRYKGLGEMDAEQLWETTLNPETRMMKRVEIEDARLASSVTEILMGSDVPPRKKFIYE 655

Query: 795 NSLPSALDI 803
           ++  + LDI
Sbjct: 656 HAQDAELDI 664


>gi|225572725|ref|ZP_03781480.1| hypothetical protein RUMHYD_00914 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039898|gb|EEG50144.1| hypothetical protein RUMHYD_00914 [Blautia hydrogenotrophica DSM
           10507]
          Length = 641

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 254/593 (42%), Positives = 355/593 (59%), Gaps = 14/593 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YDA SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY   I 
Sbjct: 3   KKNTYDAASISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCSHIR 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L  DGSCTVSDNGRGIP DLH++ G+SA  ++ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 62  VVLEKDGSCTVSDNGRGIPVDLHEK-GMSAERLVFTTLHAGGKFDDSAYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS++L ++I R+G I+   +  GI    L        G    +TGT V F P  +
Sbjct: 121 SVVNALSTYLDIKISRDGYIHHDHYERGIPTIELENGLLPRIGKTK-ETGTCVNFSPDPE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+   ++ RL E ++LN ++ I   D R+   +++      GI  F+  L++ K
Sbjct: 180 IFEKTRFSATEVKSRLHETAYLNPALTIEFEDSRAETAQKVVYHEPEGIVGFIRELNQSK 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L   P+ ++G  + IS++ A ++ + +HENVL F NNI   +GGTHL+G ++  T  +
Sbjct: 240 EVLH-KPVFLKGESEGISVEAAFQFTNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTSVM 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y  +    K+   +  G D R G T+V+SIK P PRF  QTK KL + +   V    +
Sbjct: 299 NTYARELGVLKEKDSNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQDAARVTGKVL 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  + + +  E K ++     A+ +R    RA+     K      S  GKLA+C ++
Sbjct: 359 GEQLVLYFDRNLEELKAVLSCAEKAAKIRKTEERAKTNLLSKQKYSFDS-NGKLANCEKK 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DPSVCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKATIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI 
Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 537

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            PPLY +  +  + +Y+ D+++LE Y                 G +    L  
Sbjct: 538 MPPLYKVMPKKGAEEYLYDDKALERYRKTHKSGTFTLQRYKGLGEMDAQQLWE 590



 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
             G +  +      L+      + G  ++QRYKGLGEM+A QLWETTLNP TR L RV+I
Sbjct: 547 KKGAEEYLYD-DKALERYRKTHKSGTFTLQRYKGLGEMDAQQLWETTLNPQTRILRRVEI 605

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            DA  A  +   LMG EV PR+ FI E++  + LD+
Sbjct: 606 EDARLASSVTEVLMGTEVPPRKAFIYEHAQDAQLDV 641


>gi|312867405|ref|ZP_07727614.1| DNA gyrase, B subunit [Streptococcus parasanguinis F0405]
 gi|311097106|gb|EFQ55341.1| DNA gyrase, B subunit [Streptococcus parasanguinis F0405]
          Length = 649

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 285/657 (43%), Positives = 420/657 (63%), Gaps = 17/657 (2%)

Query: 1   MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+++ Q  +    YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIEVFIEADNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G+IY   +  G + + L V G   + TGT V F+
Sbjct: 120 SGGLHGVGSSVVNALSTSLDVRVYKNGSIYYQEYRRGHVVDDLKVIGET-DRTGTTVHFI 178

Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+    ++++ L  R++EL+FLN  ++ISL DKR    +E    Y+GGI ++V Y
Sbjct: 179 PDPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLEQEKHYHYEGGISSYVEY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + + PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFEKPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSEAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G + FD+ K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++Y
Sbjct: 479 SLFTAMGTGFGAE-FDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +     + + E      SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEIKEYI--QPGANQEAELAAALERYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
             +  +   +    +  ++ A  +                 ++  R  FI E +E S
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKIFDMLM-------GDRVEPRREFIEENAEYS 645



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +     + L+  +S GR   ++QRYKGLGEM+  QLWETT+NP+
Sbjct: 547 KVGSEIKEYIQPGANQEAE-LAAALER-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 604

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN+  S LD+
Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAEYSTLDV 649


>gi|229162430|ref|ZP_04290391.1| DNA topoisomerase 4 subunit B [Bacillus cereus R309803]
 gi|228620909|gb|EEK77774.1| DNA topoisomerase 4 subunit B [Bacillus cereus R309803]
          Length = 654

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GN+YE  F N GI    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNVYEQRFENGGIPATTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631


>gi|120401034|ref|YP_950863.1| DNA gyrase subunit B [Mycobacterium vanbaalenii PYR-1]
 gi|119953852|gb|ABM10857.1| DNA gyrase subunit B [Mycobacterium vanbaalenii PYR-1]
          Length = 675

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 273/678 (40%), Positives = 385/678 (56%), Gaps = 38/678 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+       + Y ADSI++L+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ 
Sbjct: 1   MAAQKKNAPAEYGADSIKVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+A  + V +  DG   V+D+GRGIP  +H   GI   +V+MT LHAGGKF + +Y+VSG
Sbjct: 60  GFATKVDVRILEDGGVQVTDDGRGIPVAMHS-TGIPTVDVVMTVLHAGGKFEEGAYQVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L+  I+++G  +  ++   +    L   G    DTGT + F   
Sbjct: 119 GLHGVGVSVVNALSTRLEADIRKDGYEWHQTYDRSVP-GTLKQ-GEKSKDTGTTIRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
            DIF   +++++T+  RL+E++FLN  + I L D+R                        
Sbjct: 177 PDIFETTNYDFETIARRLQEMAFLNKGLTIELTDERVTPADVVDDVVSDHAEAPKSAEEK 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y GG+  FV +++R K P+  S I   G  +   +++AM+WN G
Sbjct: 237 AAEAAAPQKVKHRVFHYPGGLVDFVKHINRTKTPIQPSIIDFDGKGEGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+  P+F  QTK KL ++EV+S V+   N+ LS W E +P EAK +V K + ++  
Sbjct: 357 VISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVNKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  L+ NG +++ +PPLY +   +S  ++   +   +  L    
Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGR 595

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
            + +     D           +  +                       A          D
Sbjct: 596 AAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655

Query: 628 QEINVSLASKLANRLNFI 645
            E   S  ++ A  + F+
Sbjct: 656 VEARRSFITRNAKDVRFL 673



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G++ I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LLEAGRAAGKR-INVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675


>gi|290580369|ref|YP_003484761.1| putative DNA topoisomerase IV subunit B [Streptococcus mutans
           NN2025]
 gi|254997268|dbj|BAH87869.1| putative DNA topoisomerase IV subunit B [Streptococcus mutans
           NN2025]
          Length = 649

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 269/649 (41%), Positives = 397/649 (61%), Gaps = 17/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKKININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I V +N DGS TV+D+GRG+PT  H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNQIDVIINKDGSITVADHGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F + G     L   G A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGIVYKQRFEDGGKPATTLEKVGKAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  +F Y+T+  RL E +FL  +V ++L D+RS E   +   Y+ G++ FV YL+
Sbjct: 179 DTGIFSTTNFVYNTIAERLNESAFLLKNVTLTLTDERSEETEHVAFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I  +G   +  +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 239 EDKEILTP-VIYFEGEEADFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+  V++ L+ +L E+   A  +++K + A   R+AAR+ARD     RK   D   L GK
Sbjct: 358 VDGLVSEQLTYFLMENGELASNLIRKAIKAREAREAARKARDDSRNGRKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+ D ++ ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMDDIIKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G G   F ++   Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGAG-PDFKVDDSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY +++     + ++Y   +  LED          ++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGAKEVVEYAWTDGELEDLRKKFGKGAMLQRYKGLGEMNADQLWET 596

Query: 590 FI--DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +  ++   I   I+D      +  +             +  +  +L  
Sbjct: 597 TMNPENRTLIRVTIEDLARAERRVNVLMGDKVPPRRKWIEDNVKFTLEE 645



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 55/73 (75%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L+ +     KG  +QRYKGLGEMNA QLWETT+NP+ R+L+RV I D ++A+   + LMG
Sbjct: 566 LEDLRKKFGKGAMLQRYKGLGEMNADQLWETTMNPENRTLIRVTIEDLARAERRVNVLMG 625

Query: 783 DEVEPRREFIQEN 795
           D+V PRR++I++N
Sbjct: 626 DKVPPRRKWIEDN 638


>gi|25011278|ref|NP_735673.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae NEM316]
 gi|77412221|ref|ZP_00788540.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae CJB111]
 gi|23095702|emb|CAD46888.1| unknown [Streptococcus agalactiae NEM316]
 gi|77161728|gb|EAO72720.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae CJB111]
          Length = 649

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 264/649 (40%), Positives = 393/649 (60%), Gaps = 17/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+      ++Y  D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKQDITVTNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I V +N DGS TV+D+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNRIDVIINKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G IY   F N G     L   G+A    +GT V+F+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              +FS  DF ++T+  RL+E +FL  +V ++L D RS E   +   Y+ G++ FV YL+
Sbjct: 179 DQSVFSTIDFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    +  +G      I++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 239 EDKETLTP-IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG +++LSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KSMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+  V++ L+ +L E+   A  +++K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   ++ ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F+I+ + Y K+IIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIHTIGAGVG-PDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           +YI  PPLY +++GK  + + +    +   + L  +     +       G ++ + L   
Sbjct: 537 VYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWET 596

Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
               +    I   I+D      +  +             +  +  +L  
Sbjct: 597 TMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 645



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735
            + +F  +Y R                         +I       + L+ +     KG  
Sbjct: 519 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 578

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+V PRR++I++N
Sbjct: 579 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 638


>gi|152975974|ref|YP_001375491.1| DNA topoisomerase IV subunit B [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024726|gb|ABS22496.1| DNA topoisomerase IV, B subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 654

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 271/597 (45%), Positives = 385/597 (64%), Gaps = 17/597 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVIIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTILHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N GI    L   G    ++GT + F P S
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGIPVTTLEKIGKTK-ESGTTMHFKPDS 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 SIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDAIHP-VVYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +V+S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLAAVVSVRVPEELLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE P  A ++VKK + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEETPDVATLLVKKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F I  + Y K++IMTDAD DGAHI+ LLLTFF+R M SLI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FSIEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKSLIEAGKVF 531

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRN 589
           I  PPLY +++GK    V +    ++ L + +       I       G ++ + L  
Sbjct: 532 IALPPLYKVSKGKGKNEVIEYAWSDEELASVTKKVGKGYILQRYKGLGEMNADQLWE 588



 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFSIEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +       + I+       L ++     KG  +Q
Sbjct: 514 LTFFYRYMKSLIEAGKVFIALPPLYKVSKGKGKNEVIEYAWSDEELASVTKKVGKGYILQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|213966260|ref|ZP_03394444.1| DNA gyrase, B subunit [Corynebacterium amycolatum SK46]
 gi|213951112|gb|EEB62510.1| DNA gyrase, B subunit [Corynebacterium amycolatum SK46]
          Length = 679

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 280/655 (42%), Positives = 382/655 (58%), Gaps = 47/655 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              YDA SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GYA  + V
Sbjct: 5   EHQYDASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGYATDVEV 63

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V DNGRGIP ++H   G+   +V+MT+LHAGGKF+ +SY VSGGLHGVG+S
Sbjct: 64  TLLEDGGVQVRDNGRGIPVEMHPS-GMPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGIS 122

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ ++  + R+G  +  +F   + +   ++ G     +GT   F P  +IF   D
Sbjct: 123 VVNALSTRMETEVIRDGYTWYQNFDQAVPEE--IIRGKKTRGSGTTQRFWPDPEIFETTD 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------------- 215
           F +DT+  RLRE++FLN  + I+L+DKR                                
Sbjct: 181 FKFDTISRRLREMAFLNKGLTITLVDKRVSEEELEAEALAEQAETESAEIAKDAAEEQKE 240

Query: 216 -------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                  P+ R     Y  G+  +V  L++ K  +  + I    + +   +++AM+WN G
Sbjct: 241 KTEKTTKPKERRKVFHYPNGLRDYVETLNKSKNIIHPTIISFDAAGEGHEVEIAMQWNSG 300

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G RSALT  +  Y  +    K+ + ++ G+DCREG  +
Sbjct: 301 YSESVHTFANTINTIEGGTHEEGFRSALTSLMNRYAREHRLLKEKENNLSGEDCREGLAA 360

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ DP+F  QTK KL ++EVRS V+   N+ +  WLE +P EAK IV K + ++  
Sbjct: 361 VISVKVADPQFEGQTKTKLGNTEVRSFVQRMTNEHIGHWLEANPAEAKAIVNKAIASAHA 420

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRK   D+  LPGKLADC  +DPK+SELF+VEGDSAGGSAK GR+   Q
Sbjct: 421 RQAARKARDLVRRKSATDLGGLPGKLADCRSKDPKQSELFIVEGDSAGGSAKAGRNSLFQ 480

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKILNVE+AR DK L + E+  +ITALGTGI  D FDI KLRYHKI++M DADV
Sbjct: 481 AILPLRGKILNVEKARLDKTLKNNEVQAIITALGTGI-HDEFDIEKLRYHKIVLMADADV 539

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  LI  G +Y+ +PPLY +   K    Y   +   +  L    
Sbjct: 540 DGQHIATLLLTLLFRLMRPLIDEGHVYLAQPPLYKLKWAKGEPGYAYSDAERDQLLEEGL 599

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
            +       D             ++ A   D  +   +    K  +E A  +   
Sbjct: 600 AANRKINKDDGVQRYKG---LGEMNAAELWDTTMDPDHRVLRKVALEDAQKADEL 651



 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 8/88 (9%)

Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D +   G    + I+    +QRYKGLGEMNA++LW+TT++PD R L +V + DA +AD+L
Sbjct: 592 DQLLEEGLAANRKINKDDGVQRYKGLGEMNAAELWDTTMDPDHRVLRKVALEDAQKADEL 651

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           F+ LMGD+V  RR FI  N+     LD+
Sbjct: 652 FTILMGDDVASRRSFITRNAKDVRFLDV 679


>gi|291546804|emb|CBL19912.1| DNA topoisomerase IV subunit B [Ruminococcus sp. SR1/5]
          Length = 652

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 255/622 (40%), Positives = 355/622 (57%), Gaps = 15/622 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  +YDA SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY   I 
Sbjct: 14  KKDTYDAGSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCSRIH 72

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L  DGSCTV DNGRGIP D+H + GISA  ++ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 73  VVLEKDGSCTVEDNGRGIPVDMHAK-GISAERLVFTTLHAGGKFDNSAYKTSGGLHGVGS 131

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS++L ++I R+G I+   +  GI    L        G     TGT V FLP  +
Sbjct: 132 SVVNALSTYLDIKISRDGYIHHDHYERGIPTIELEAGLLPKLGKT-RGTGTCVNFLPDPE 190

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F    ++ RL E ++LN  + I   D+R   P +I      GI  F+  L+++ 
Sbjct: 191 IFEKTRFGAADVKSRLHETAYLNPELTIHFEDRRGDTPEDIEYHEPEGIVGFIRDLNKNA 250

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL   P+  +G  D I +++A ++ + + ENVL F NNI   +GGTHL+G ++  T  +
Sbjct: 251 QPLH-DPVYFKGEADGIQVEVAFQFTNEFRENVLGFCNNIYNAEGGTHLTGFKTTFTTVM 309

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y  +    K    +  G D R G T+V+SIK P PRF  QTK KL + +         
Sbjct: 310 NTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQDASRATGKVA 369

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  + + +    KI++     A+ +R    RA+     K      S  GKLA+C ++
Sbjct: 370 GEQLVLFFDRNLETLKIVLSCAEKAAKIRKTEERAKTNLLTKQKYSFDS-NGKLANCEKK 428

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 429 DPSLCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKATIDKVLANAEIKTMINA 488

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY KI+IM DADVDGAHI TLLLT F+R MP LI+ G +YI 
Sbjct: 489 FGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 548

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN-FIDDAL 595
            PPLY +  +    +Y+ D+++LE Y  +              G +    L    ++   
Sbjct: 549 MPPLYKVMPKKGQEEYLYDDKALEKYRKSHKPGSFTLQRYKGLGEMDAQQLWETTLNPET 608

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
           ++ K ++           E  +
Sbjct: 609 RMMKRVEIEDARMASDVTEILM 630



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
             G +  +      L+      + G  ++QRYKGLGEM+A QLWETTLNP+TR + RV+I
Sbjct: 558 KKGQEEYLYD-DKALEKYRKSHKPGSFTLQRYKGLGEMDAQQLWETTLNPETRMMKRVEI 616

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            DA  A D+   LMG +V PR+ FI E++  + LDI
Sbjct: 617 EDARMASDVTEILMGSDVPPRKAFIYEHATDAELDI 652


>gi|77405922|ref|ZP_00783003.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae H36B]
 gi|77175496|gb|EAO78284.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae H36B]
          Length = 642

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 263/641 (41%), Positives = 392/641 (61%), Gaps = 16/641 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y  D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ + I V 
Sbjct: 2   TNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVI 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS TV+D+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 61  INKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VNALSSWL++ I R+G IY   F N G     L   G+A    +GT V+F+P   +FS  
Sbjct: 120 VNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI 179

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           DF ++T+  RL+E +FL  +V ++L D RS E   +   Y+ G++ FV YL+  K+ L  
Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             +  +G      I++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T+ +  Y  
Sbjct: 240 -IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K+   K+  +++ G D REG +++LSI +P+   +F  QTK+KL S   R +V+S V++ 
Sbjct: 299 KTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDSIVSEK 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           L+ +L E+   A  +++K + A   R+AAR+ARD     +K   D   L GKL     ++
Sbjct: 359 LTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   ++ ++EI T+I  +
Sbjct: 419 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++ + Y K+IIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPL
Sbjct: 479 GAGVG-PDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPL 537

Query: 542 YGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDAL 595
           Y +++GK  + + +    +   + L  +     +       G ++ + L       +   
Sbjct: 538 YKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRT 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            I   I+D      +  +             +  +  +L  
Sbjct: 598 LIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 638



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735
            + +F  +Y R                         +I       + L+ +     KG  
Sbjct: 512 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 571

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+V PRR++I++N
Sbjct: 572 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 631


>gi|81428587|ref|YP_395587.1| DNA topoisomerase IV subunit B [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610229|emb|CAI55278.1| Topoisomerase IV, subunit B [Lactobacillus sakei subsp. sakei 23K]
          Length = 663

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 260/597 (43%), Positives = 371/597 (62%), Gaps = 13/597 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            Q   Y+ +SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+   I
Sbjct: 3   NQKQDYNDNSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGFGAEI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+  D S +V D+GRG+PT +H + GI   EVI+T LHAGGKF Q SYK SGGLHGVG
Sbjct: 62  NVTIGADNSISVRDHGRGMPTGMH-QSGIPTIEVILTVLHAGGKFTQNSYKTSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS WL +R+ R+G  YE  F N G     L   G A    GT +TF P + IF 
Sbjct: 121 ASVVNALSEWLTVRVVRDGVAYEERFENGGHPVGTLKKVGKANEPNGTLITFKPDASIFQ 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V  +NY+TL  RLRE +FL   V+I+L D R+   +E    Y  GI++FV YL+   K  
Sbjct: 181 VTTYNYNTLAERLRESAFLLKDVKITLTDLRADPAKEDVFHYPEGIQSFVDYLNED-KDT 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           + + +  +G++++I ++ A ++NDGY EN++ F NN+   DGGTH +G+++ LT+    Y
Sbjct: 240 IGNKLYFEGTKEDIEVEFAGQYNDGYSENIMSFVNNVRTGDGGTHEAGMKAGLTKAFNDY 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K+  +++ G D REG ++VLS+++P+   +F  QTK KL S + R+ V++ V 
Sbjct: 300 ARKVNLLKERDKNMEGSDVREGLSAVLSVRIPEELLQFEGQTKGKLGSPQARTAVDNLVY 359

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL--TRRKGVLDIASLPGKLADCSE 419
           + +S +L E+   A+ +V+K L A   R+AAR+AR+     +K       L GKL     
Sbjct: 360 EQMSFFLLENGEFAQALVRKSLKAREAREAARKAREQSRNGKKKKKSDGLLSGKLTPAQS 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++  K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+  ++L ++EI T+I 
Sbjct: 420 KNAAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQEILKNEEINTMIY 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G + F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  P
Sbjct: 480 TIGAGVGAE-FKIEDSNYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIEAGKVYIALP 538

Query: 540 PLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PLY + +       + Y   ++ L+            + F     + +       +D
Sbjct: 539 PLYKLQKGAGGKTKIAYAWTDDELKVVAKEMGKGYSQQRFKGLGEMNADQLWDTTMD 595



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++              ++      S  +          ++   ++     
Sbjct: 377 VRKSLKAREAREAARKAREQSRNGKKKKKSDGLLSGKLTPAQSKNAAKNELYLVEGDSAG 436

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N +  +   +    ++   +  I       +    +N 
Sbjct: 437 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQEILKNEEINTMIYTIGAGVGAEFKIEDSNY 496

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG- 718
           D ++           +      F +      I + ++      +  L    G K KI   
Sbjct: 497 DKIIIMTDADTDGAHIQILLLTFFYRYMRPLIEAGKVYIALPPLYKLQKGAGGKTKIAYA 556

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG S QR+KGLGEMNA QLW+TT++P +R+L+RV+I DA+ A+   
Sbjct: 557 WTDDELKVVAKEMGKGYSQQRFKGLGEMNADQLWDTTMDPTSRTLIRVRIDDAALAERRV 616

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+EN
Sbjct: 617 TTLMGDKVEPRRKWIEEN 634


>gi|325843401|ref|ZP_08167959.1| DNA topoisomerase IV, B subunit [Turicibacter sp. HGF1]
 gi|325489323|gb|EGC91697.1| DNA topoisomerase IV, B subunit [Turicibacter sp. HGF1]
          Length = 644

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 254/566 (44%), Positives = 374/566 (66%), Gaps = 15/566 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS ++   +Y+ DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNAIDE L GY
Sbjct: 1   MSTHL---NYNEDSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAIDEVLAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ + S +V D+GRG+PT +H + G    EVI T LHAGGKF    YK SGGL
Sbjct: 57  GDHIKVTIHENNSISVQDSGRGVPTGMH-KSGKPTPEVIFTVLHAGGKFGTGGYKTSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS W+++ IKR+GN+Y   F N G     L + G +  +TGT V+F P  
Sbjct: 116 HGVGASVVNALSEWVEVTIKRDGNVYRQRFENGGHPVTGLDIIGKSK-ETGTLVSFKPDP 174

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IFS   +++D L  RLRE +FL   ++I LID R+ +    T +Y+ GI++FVSYL+  
Sbjct: 175 EIFSTTVYSFDILSERLRESAFLLKGLKIELIDLRNDKE--ETFYYEDGIKSFVSYLNEG 232

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +  +G    I +D A +++  Y EN+L F NN+  KDGGTH +G ++ LTR 
Sbjct: 233 KDTLH-DVVYFEGESQEIEVDFAFQYSGSYSENILSFVNNVRTKDGGTHETGAKAVLTRI 291

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  ++   K+ ++++ G D REG  +++S+++P+   +F  QTK KL + E RS V+
Sbjct: 292 FNDYARRNGLLKEKEKNLEGADIREGLAAIVSVRIPENLLQFEGQTKAKLGTPEARSAVD 351

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + + + L+ + EE+   A  ++KK + A+ VR+AAR+AR+   + +       +L GKL 
Sbjct: 352 NVIAEKLTFFFEENGAVATQLIKKAIKAAQVREAARKAREDARSGKTKKKKETNLSGKLT 411

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++P+K+ELFLVEGDSAGGSAK GR+R  QAILPLRGK++N E+A+ + +  ++EI 
Sbjct: 412 PAQTKNPQKNELFLVEGDSAGGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEIN 471

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G + F+++ + Y K+IIMTDAD DGAHI+ LLLTFFFR M  L+  G +Y
Sbjct: 472 TMIYTIGAGVGAN-FELSDVNYDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVY 530

Query: 536 IIKPPLYGITRGKSLQYVKDEESLED 561
           I  PPLY +++G+  + V +    ++
Sbjct: 531 IALPPLYKVSKGQGKKQVVEYAWTDE 556



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 9/259 (3%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +   ++    +   +         +E  L        +KN      ++   ++    
Sbjct: 375 KAIKAAQVREAARKAREDARSGKTKKKKETNLSGKLTPAQTKN---PQKNELFLVEGDSA 431

Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                  +    QA++     V N E  +  ++    ++   +  I      ++  S  N
Sbjct: 432 GGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEINTMIYTIGAGVGANFELSDVN 491

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++           +      F F    + + + ++      +  +     K ++   
Sbjct: 492 YDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVYIALPPLYKVSKGQGKKQVVEY 551

Query: 720 C---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 L ++ +   KG ++QRYKGLGEMNA QLW+TT+NP+TR+L++V I DA+ AD  
Sbjct: 552 AWTDEELGSVIAKVGKGYTLQRYKGLGEMNADQLWDTTMNPETRTLIQVSIEDAADADHR 611

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRRE+I++N
Sbjct: 612 VTTLMGDKVEPRREWIEQN 630


>gi|56751624|ref|YP_172325.1| DNA gyrase subunit B [Synechococcus elongatus PCC 6301]
 gi|81301300|ref|YP_401508.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
 gi|25019687|gb|AAN71773.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
 gi|56686583|dbj|BAD79805.1| DNA gyrase B subunit [Synechococcus elongatus PCC 6301]
 gi|81170181|gb|ABB58521.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
          Length = 645

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 289/638 (45%), Positives = 405/638 (63%), Gaps = 14/638 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A  IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNA+DE+L GY + I V 
Sbjct: 3   NEYGASQIQVLEGLEPVRKRPGMYIGST-GPKGLHHLVYEVVDNAVDEALAGYCNTIDVR 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DGSC V+DNGRGIPTD+H + G SA E ++T LHAGGKF    YKVSGGLHGVGVSV
Sbjct: 62  LLEDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGVSV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186
           VNALS ++++ + REG  ++  F  G     L V   A +  GT+V F P + IF    +
Sbjct: 122 VNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRRGTQVRFKPDATIFSETTE 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+Y TL  RL+EL++LN+ V+I   D+R     + EP + T +++GGI  +V+Y++  K+
Sbjct: 182 FDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTDKQ 241

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            L    I +Q  +D + ++ A++W  D Y +N+L F NNI   DGGTH+ GL++ LTR +
Sbjct: 242 ALHSEIIFVQSEKDGVQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTRTM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +   K    K    ++ G++ REG T+++S+K+PDP F  QTK KL ++EVR +V++ V
Sbjct: 302 NTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLV 361

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +LE HP  A +I++K + A    +AARRAR+L RRK VL+ ++LPGKLADCS R
Sbjct: 362 GETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSR 421

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI  LITA
Sbjct: 422 DPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITA 481

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG GI  + FD ++LRYH+I+IMTDADVDGAHIRTLLLTFF+R   SL+  G++YI  PP
Sbjct: 482 LGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIACPP 541

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY + RG++  Y  +E  L++ +     +           G +    L         +D 
Sbjct: 542 LYKLERGRNHYYCYNERELQERIATFPENANYTIQRFKGLGEMMPQQLWET-----TMDP 596

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             +       +   E   I  +   +  Q     + + 
Sbjct: 597 ETRTMKRVEIEDAAEADRIFTILMGDRVQPRREFIETY 634



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 136/340 (40%), Gaps = 48/340 (14%)

Query: 505 DADVD--GAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLE 560
           DAD +  G +IR  L      ++P     G     +    + GI      + + +     
Sbjct: 313 DADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGETLTEYLEFH 372

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQ 615
             + +  L + I+ F  ++      +L  R  + ++  +   + D         + FI +
Sbjct: 373 PSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIFIVE 432

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSIN 658
              +G    +       ++       LN       K +                     +
Sbjct: 433 GDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFD 492

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTIL-----SLIC 709
            S +   RI   +     ++G+ I +    F  +Y+R     +E+ Y+ I       L  
Sbjct: 493 ASQLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQRSL---LEQGYIYIACPPLYKLER 547

Query: 710 NGDKIKITGPCSLLDTIF---SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
             +         L + I           ++QR+KGLGEM   QLWETT++P+TR++ RV+
Sbjct: 548 GRNHYYCYNERELQERIATFPENA--NYTIQRFKGLGEMMPQQLWETTMDPETRTMKRVE 605

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENS--LP-SALDI 803
           I DA++AD +F+ LMGD V+PRREFI+     L  +ALDI
Sbjct: 606 IEDAAEADRIFTILMGDRVQPRREFIETYGPQLSMAALDI 645


>gi|296876169|ref|ZP_06900223.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432880|gb|EFH18673.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 15912]
          Length = 649

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 285/657 (43%), Positives = 420/657 (63%), Gaps = 17/657 (2%)

Query: 1   MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+++ Q  +    YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIEVFIEADNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G+IY   +  G + + L V G   + TGT V F+
Sbjct: 120 SGGLHGVGSSVVNALSTSLDVRVYKNGSIYYQEYRRGHVVDDLKVIGET-DRTGTTVHFI 178

Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+    ++++ L  R++EL+FLN  ++ISL DKR    +E    Y+GGI ++V Y
Sbjct: 179 PDPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLEQEKHYHYEGGISSYVEY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + + PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFEKPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVVNDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G + FD+ K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++Y
Sbjct: 479 SLFTAMGTGFGAE-FDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +     + + E      SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEIKEYI--QPGANQEAELAAALERYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
             +  +   +    +  ++ A  +                 ++  R  FI E +E S
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKIFDMLM-------GDRVEPRREFIEENAEYS 645



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +     + L+  +S GR   ++QRYKGLGEM+  QLWETT+NP+
Sbjct: 547 KVGSEIKEYIQPGANQEAE-LAAALER-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 604

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN+  S LD+
Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAEYSTLDV 649


>gi|89101240|ref|ZP_01174064.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
 gi|89084046|gb|EAR63223.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
          Length = 661

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 265/610 (43%), Positives = 384/610 (62%), Gaps = 16/610 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + N Q   Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L GY 
Sbjct: 4   ATNQQAFDYNDDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEALAGYG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V ++ D S +V D GRG+PT +H + G    E+I+T LHAGGKF Q  YK SGGLH
Sbjct: 63  DHIIVKIHKDNSISVQDKGRGMPTGMH-KLGKPTPEIILTVLHAGGKFGQGGYKTSGGLH 121

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           GVG SVVNALS WL ++I+R G +YE  F N G     L   G   N +GT + F P   
Sbjct: 122 GVGASVVNALSEWLVVKIRRNGFVYEQRFENGGKPATTLEKVGKT-NQSGTVIHFKPDPA 180

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   +NY+TL  RLRE +FL   ++I LID+R          ++ GIEAFV YL+  K
Sbjct: 181 IFSTTVYNYETLCERLRESAFLMKGMKIELIDERHD--ARDLFHFETGIEAFVEYLNEEK 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L    +  +G  + I +D A ++NDGY ENVL F NN+  KDGGTH +G ++A+TR  
Sbjct: 239 DVLHP-VVSFEGEHNQIEVDFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGSKTAMTRVF 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K    K+  +++ G D REGF++++S+++P+   +F  QTK KL +SE RS V++
Sbjct: 298 NEYARKVGLLKEKDKNLDGSDIREGFSAIISVRVPEELLQFEGQTKGKLGTSEARSAVDA 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ LS +LEE+P  + +++KK + A   R+AAR+AR+  R  +K     A L GKL  
Sbjct: 358 VVSEHLSYFLEENPNISSLLIKKAIKAYQAREAARKAREEARGGKKRKRSEAVLSGKLTP 417

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI T
Sbjct: 418 AQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEINT 477

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I A+G G+G D F++  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++I
Sbjct: 478 IIHAIGAGVGAD-FNVEDVNYEKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFI 536

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
             PPLY ++    + + ++Y   ++ L+  +        I+ +     + +       +D
Sbjct: 537 ALPPLYKVSKGIGKKEKIEYAWSDDELQGAMKKIGKGYMIQRYKGLGEMNADQLWETTMD 596

Query: 593 DALKIDKLIK 602
              +    ++
Sbjct: 597 PESRTLIRVR 606



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   ++ I       ++    N + +V           +    
Sbjct: 458 VINTEKAKLQDIFKNEEINTIIHAIGAGVGADFNVEDVNYEKVVIMTDADTDGAHIQVLL 517

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I + ++      +  +    G K KI        L   +  IG KG  +
Sbjct: 518 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGIGKKEKIEYAWSDDELQGAMKKIG-KGYMI 576

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QRYKGLGEMNA QLWETT++P++R+L+RV+I DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 577 QRYKGLGEMNADQLWETTMDPESRTLIRVRIDDAARAERRVTTLMGDKVEPRRKWIETN 635


>gi|33469292|gb|AAQ19683.1| DNA gyrase subunit B [Staphylococcus haemolyticus]
          Length = 644

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 296/591 (50%), Positives = 403/591 (68%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   GS  + TGT + F    +I
Sbjct: 125 GVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  + I+L D+R   E RE T  Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQKRIRELAFLNKGISITLRDEREDVEQREDTYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+ + PI I  ++D++ I++AM++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHEEPIYIHQTKDDVEIEIAMQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTRI 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY  +S   K DK  + G+D REG T+V+SIK  DP+F  QTK KL +SEVR +V+  
Sbjct: 304 LNSYGTQSKIIKDDKERLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             +    +L EHP  A+I+V+K + AS  R AA++AR++TRRK  L+I+SLPGKLADCS 
Sbjct: 364 FAEHFERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++SE+FLVEGDSAGGS K+GR  + QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KKPEESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY + +GK   YV ++  L+      S +           G ++ + L  
Sbjct: 543 PLYKLAQGKQKYYVFNDRELDKLKSELSPTPKWQISRYKGLGEMNADQLWE 593



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 32/280 (11%)

Query: 550 LQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
            +++ +  ++   ++ + + +    +       +++      I              P  
Sbjct: 369 ERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKKPEE 428

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI----------- 657
            + F+ +   +G    E       ++       LN    + ++  + +            
Sbjct: 429 SEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTG 488

Query: 658 --NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-KRIFSNRIEENYLTIL-----SLI 708
                DI   R  + V      ++G+ I +    +  R     IE  Y+ I       L 
Sbjct: 489 IGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLA 548

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTLNPDTRSL 762
               K  +      LD + S     +S      + RYKGLGEMNA QLWETT+NP+ R +
Sbjct: 549 QGKQKYYVFNDRE-LDKLKSE----LSPTPKWQISRYKGLGEMNADQLWETTMNPENRMM 603

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           L+VK+ DA +AD     LMGD VE RR+FI++N++ + LD
Sbjct: 604 LQVKLEDAIEADHTCEMLMGDVVENRRQFIEDNAVYANLD 643


>gi|312869236|ref|ZP_07729408.1| DNA gyrase, B subunit [Lactobacillus oris PB013-T2-3]
 gi|311095257|gb|EFQ53529.1| DNA gyrase, B subunit [Lactobacillus oris PB013-T2-3]
          Length = 648

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 291/599 (48%), Positives = 397/599 (66%), Gaps = 13/599 (2%)

Query: 1   MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MSD  +       S YDA  IQ+LKGLDAV+KRP MYIG T  + GLHH+++E++DN ID
Sbjct: 1   MSDEQKETKAQLASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I V +N D S TV DNGRGIP D+  + G  A E + T LHAGGKF    Y
Sbjct: 60  EALAGFCTEINVEVNPDNSITVRDNGRGIPVDIQGQTGKPALETVFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTE 172
           KVSGGLHGVG SVVNALS+ L +++ R+G  Y M F +G +   + V     A +  GT 
Sbjct: 120 KVSGGLHGVGASVVNALSTELDVKVARQGKEYYMDFDHGHVKTSMKVINDHLAEDIHGTT 179

Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F P   IF     +N  TL +RLREL+FLN  ++I++ DKR  EP      Y+GGI  
Sbjct: 180 VHFKPDPAIFRETTVYNIKTLTNRLRELAFLNKGLKITIEDKRDDEPERQDFHYEGGIRH 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           +V YL+  K  L + PI ++G  + I++++++++ D Y   +L FTNNI   +GGTH +G
Sbjct: 240 YVDYLNEDKTTLFEPPIYVEGKENGITVEVSLQYTDSYRSELLTFTNNIHTYEGGTHETG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            + ALTR I  Y  K+   K ++ ++ GDD REG T+V+SIK PDP+F  QTK KL +S+
Sbjct: 300 FKMALTRVINDYGHKANILKSNE-TLSGDDVREGMTAVVSIKHPDPQFEGQTKTKLGNSD 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            R+  +       + +L EHP EA+ I++K   AS  R AA+RAR++TR+K  L+I++LP
Sbjct: 359 ARTATDHVFAATFNRFLMEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLAD + +DP  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++
Sbjct: 419 GKLADNTSKDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLAN 478

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +EI +L TALGTG G+D FDI+K  YHK+IIMTDADVDGAHIRTLLLT  +R M  +I +
Sbjct: 479 EEIRSLFTALGTGFGED-FDIDKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMRPMITH 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           G++YI +PPLY + +GK ++Y++ +E LE  + +   S + +       G +    L  
Sbjct: 538 GYVYIAQPPLYQVRQGKFVRYIESDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 596



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 54/68 (79%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R LLRV++ DA QA+++F  LMG +V PRR+FI++N
Sbjct: 580 IQRYKGLGEMDAEQLWETTMDPENRHLLRVQLDDAEQANEIFPMLMGTKVGPRRDFIEQN 639

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 640 AKFVENLD 647


>gi|300865369|ref|ZP_07110180.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506]
 gi|300336672|emb|CBN55330.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506]
          Length = 646

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 301/647 (46%), Positives = 414/647 (63%), Gaps = 16/647 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L G+   I V
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGHCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV+D+GRGIPT +  + G S  E +MT LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  DINADGSVTVTDDGRGIPTGIVAKTGKSGIETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS W+++ + R+  ++   F  GI    LV   S  N +GT V+FLP + IFS   
Sbjct: 121 VVNALSEWVEVTVWRDKKVHNQRFERGIPVTDLVDKPSKENRSGTSVSFLPDTQIFSTGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----EPREITMFYKGGIEAFVSYLDRHK 240
           +F+Y  L  RLREL++LN+ V+I+  D+R       EP   T  Y+GGI+ +++Y++R K
Sbjct: 181 EFDYTILSGRLRELAYLNAGVKITFSDRRLELLKSSEPHIETYCYEGGIKEYIAYMNRDK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +PL +  I IQG R+N+ ++++++W  D Y +NVL F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QPLHEEVIFIQGERNNVQVEVSLQWCIDAYSDNVLGFANNIRTIDGGTHLEGLKAVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +   K    K+++ ++ G++ REG T+V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 MNAIARKRNKIKENEPNLGGENIREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +LE  P  A  I++K + A    +AARRARDL RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLTEYLEFRPQVADTILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP KSE++LVEGDSAGGSAKQGR R+ QAILPLRGKILN+E+    K+  + EI +LIT
Sbjct: 421 RDPSKSEIYLVEGDSAGGSAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNNEIQSLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GI  D FD ++LRYH I+IMTDADVDGAHIRTLLLTFF+R   SL+  G++YI  P
Sbjct: 481 ALGLGIRGDEFDPSQLRYHHIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYIYIACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALKI 597
           PLY + RG++  Y   +  L++ + N+  +            G +    L         +
Sbjct: 541 PLYKVERGRNHFYCYSDRELQNLIRNEFPANANYTIQRFKGLGEMMPQQLWET-----TM 595

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +   +       +   E   I  +   +               +LN 
Sbjct: 596 NPESRTLKRVEIEDAAEADRIFTILMGDRV-APRREFIETYGPKLNL 641



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 5/157 (3%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            +  S      +V      V    +      F +  +   +    I      +  +    
Sbjct: 490 EFDPSQLRYHHIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYIYIACPPLYKVERGR 549

Query: 712 DKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           +         L + I +        ++QR+KGLGEM   QLWETT+NP++R+L RV+I D
Sbjct: 550 NHFYCYSDRELQNLIRNEFPANANYTIQRFKGLGEMMPQQLWETTMNPESRTLKRVEIED 609

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
           A++AD +F+ LMGD V PRREFI+          LDI
Sbjct: 610 AAEADRIFTILMGDRVAPRREFIETYGPKLNLTDLDI 646


>gi|229018787|ref|ZP_04175636.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1273]
 gi|229025031|ref|ZP_04181459.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1272]
 gi|228736237|gb|EEL86804.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1272]
 gi|228742537|gb|EEL92688.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1273]
          Length = 662

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 265/655 (40%), Positives = 398/655 (60%), Gaps = 18/655 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+ D I+V +
Sbjct: 15  QYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGFGDEISVVI 73

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGLHGVG SVV
Sbjct: 74  HKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 132

Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           NALS WL + IKR+G+IYE  F N GI    L   G    ++GT + F P + IFS  ++
Sbjct: 133 NALSEWLVVTIKRDGSIYEQRFENGGIPATTLEKIGKTK-ESGTTMHFKPDTTIFSTTNY 191

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  K  +    
Sbjct: 192 NYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHP-V 248

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR    Y  K 
Sbjct: 249 VYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKV 308

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS +++ V++ L+
Sbjct: 309 SLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLA 368

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPK 423
            +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL     R+P+
Sbjct: 369 YFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQ 428

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI T+I A+G 
Sbjct: 429 KNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGG 488

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++I  PPLY 
Sbjct: 489 GVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYK 547

Query: 544 IT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK--I 597
           ++    + + ++Y   +E L+           ++ +     + +       ++   +  I
Sbjct: 548 VSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLI 607

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
              I D      +                ++ +   +  +     N +  ++E  
Sbjct: 608 RVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMETEVE 662



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 462 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 521

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 522 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 581

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+   + LMGD+VEPRR++I+ N
Sbjct: 582 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 639


>gi|330470839|ref|YP_004408582.1| DNA gyrase subunit B [Verrucosispora maris AB-18-032]
 gi|328813810|gb|AEB47982.1| DNA gyrase subunit B [Verrucosispora maris AB-18-032]
          Length = 648

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 267/554 (48%), Positives = 366/554 (66%), Gaps = 11/554 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +N  Y A+SI +L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE+L G+
Sbjct: 1   MAAQ-ENQQYGAESITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEALAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V L  DG   V+DNGRG P DLH +      EV +T LHAGGKF+ K+Y VSGGL
Sbjct: 59  CDTIDVVLLADGGVRVTDNGRGFPVDLHPKLKKPGVEVALTVLHAGGKFDGKAYAVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ + + I ++G ++   + +      L   G   + TG+ V+F P  D
Sbjct: 119 HGVGVSVVNALSTRMAVEIHKDGFVWRQQYDHSKPST-LEK-GEPTDRTGSAVSFWPDPD 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSY 235
           +F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y GGI  FV +
Sbjct: 177 VFETTDFDFQTIYRRLQEMAFLTRGLTIHLLDERVAEGEDGKVREVTFKYDGGIADFVRH 236

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+  K P+ ++ I      + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G R+A
Sbjct: 237 LNASKSPMHKTVIEFGAEEEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAA 296

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S 
Sbjct: 297 LTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSF 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+   ND L  WL+ +P EAKII+ K   A+  R AA++AR L RRK +L+  S+PGKLA
Sbjct: 356 VQRVCNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLA 415

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+ 
Sbjct: 416 DCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQ 475

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LITALGTGI  D FD+ KLRYHK+++M DADVDG HI+TLLLT  FR M  L+  G +Y
Sbjct: 476 ALITALGTGI-HDDFDMEKLRYHKVVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVY 534

Query: 536 IIKPPLYGITRGKS 549
           +  PPLY I   K 
Sbjct: 535 LAAPPLYKIKWNKK 548



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMN  +LWETT+NP TR+L +V + DA+ AD+LFS LMG++VE RR FIQ N
Sbjct: 580 IQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAATADELFSVLMGEDVEARRSFIQRN 639

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 640 AKDVRFLDI 648


>gi|314935205|ref|ZP_07842558.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80]
 gi|313656540|gb|EFS20279.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80]
          Length = 644

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 292/591 (49%), Positives = 402/591 (68%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIENDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   GS    TGT + F   S+I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGSTE-KTGTVIRFKADSEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           FS    +NY+TLQ R+REL+FLN  + I+L D+R  + +      Y+GGI+++V  L+ +
Sbjct: 184 FSETTVYNYETLQKRIRELAFLNKGISITLRDEREDKEQREDTYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY  +S   K DK  + G+D REG T+V+S+K  +P+F  QTK KL +SEVR +V+  
Sbjct: 304 LNSYGTQSKIIKDDKERLSGEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSEVRQIVDRL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+IIV+K + AS  R AA++AR++TRRK  L+I+SLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++P +SE+FLVEGDSAGGS K+GR  + QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KNPDESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVFNDRELDKLKAELNPTPKWQISRYKGLGEMNADQLWE 593



 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 24/183 (13%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690
             RL+ I   +E          G     DI   R  + V      ++G+ I +    +  
Sbjct: 466 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 525

Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRY 739
           R     IE  Y+ I       L     K  +      LD + +     ++      + RY
Sbjct: 526 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE----LNPTPKWQISRY 580

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMNA QLWETT+NP+ R +L+VK+ DA +AD  F  LMGD VE RR+FI++N++ +
Sbjct: 581 KGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEMLMGDVVENRRQFIEDNAVYA 640

Query: 800 ALD 802
            LD
Sbjct: 641 NLD 643


>gi|73697709|gb|AAZ81471.1| DNA gyrase subunit B [Acholeplasma palmae]
          Length = 588

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 265/570 (46%), Positives = 366/570 (64%), Gaps = 5/570 (0%)

Query: 24  VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83
           V+KRP MYIG T GE GLHH+++E++DN+IDE+L GYAD ITV +  D    V+DNGRGI
Sbjct: 1   VRKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYADTITVEVLKDNIIRVTDNGRGI 59

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143
           P  +H + G  A E I+T LHAGGKF+  SYKVSGGLHGVG SVVNALSS+  + +   G
Sbjct: 60  PVGIHHKTGKPAVETILTTLHAGGKFDGSSYKVSGGLHGVGASVVNALSSYFIVEVHVNG 119

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFL 202
            I++  F  G     L + G   +  GT +TFL   D+F     ++++TL+ R+++L+FL
Sbjct: 120 KIHKQRFEKGFPVTGLDIIGDTTHQ-GTVITFLADPDVFKETTIYDFETLRSRVQQLAFL 178

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           N +++I++ D R  EP   T  Y+GG+  ++ +L   K  +  +    +   D I++++A
Sbjct: 179 NRNIKITITDDRKEEPVSFTYHYEGGLLEYIDFLTGTKTKINANKFYAEKEVDGITLEVA 238

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           +++ D Y  N+  FTNNIP  +GG H  G + AL R +  Y + +    K     I DD 
Sbjct: 239 LQYTDSYATNLYSFTNNIPTHEGGMHEDGFKMALNRVLAKYAKDNN-LLKKDEPFISDDT 297

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+++S+K PDP+F  QTK KL + EVR +    V +    +L E+P +AK I+ K 
Sbjct: 298 REGLTAIISVKHPDPQFEGQTKTKLGNVEVRQIASQVVGETFERYLLENPTDAKAIIDKS 357

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           L A+  R AAR+AR+ TRRK  LD      KLADC  ++P  SEL++VEGDSAGGSAKQG
Sbjct: 358 LLAARARIAARKAREATRRKSPLDALGFASKLADCRSKNPAISELYIVEGDSAGGSAKQG 417

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R  E QAILPLRGK+LNVE+AR DK+LS+ EI +LI A+GTGIG++ F+  K RYHKI+I
Sbjct: 418 RESEYQAILPLRGKVLNVEKARIDKVLSNNEILSLIQAIGTGIGEE-FNPEKARYHKIVI 476

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDGAHIRTLLLTFFFR    LI  G++Y  +PPLY +  GK ++YV D+E+L   
Sbjct: 477 MTDADVDGAHIRTLLLTFFFRYFKPLIDLGYIYFAQPPLYKLQFGKKVEYVYDDEALPKA 536

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFID 592
           L        ++ +     +  +      +D
Sbjct: 537 LEQLGGKPSMQRYKGLGEMNPEQLWETTMD 566



 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 1/158 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +   V   +++ + +  I     + ++        +V      V    +    
Sbjct: 432 VLNVEKARIDKVLSNNEILSLIQAIGTGIGEEFNPEKARYHKIVIMTDADVDGAHIRTLL 491

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I    I      +  L        +    +L   +  +G K  SMQRYK
Sbjct: 492 LTFFFRYFKPLIDLGYIYFAQPPLYKLQFGKKVEYVYDDEALPKALEQLGGK-PSMQRYK 550

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           GLGEMN  QLWETT++P+TR+LL+V + DA +AD +F+
Sbjct: 551 GLGEMNPEQLWETTMDPETRTLLQVTMKDAIEADQVFN 588


>gi|325265376|ref|ZP_08132100.1| DNA topoisomerase IV subunit B [Clostridium sp. D5]
 gi|324029377|gb|EGB90668.1| DNA topoisomerase IV subunit B [Clostridium sp. D5]
          Length = 640

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 257/640 (40%), Positives = 366/640 (57%), Gaps = 14/640 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             ++YDADSI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY   I 
Sbjct: 3   NKNTYDADSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGYCTQIH 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGS T+ DNGRG+P  +HK+ G+SA  ++ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 62  VTLEKDGSATIEDNGRGVPVGMHKK-GVSAERIVYTTLHAGGKFDDSAYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS+++ +++ REG ++   F  GI    L      V G     TGT+V FLP   
Sbjct: 121 SVVNALSTYMDVQVSREGAVHHDRFERGIPVIELEDGLLPVIGKT-RKTGTKVNFLPDDT 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + ++ RL E ++LN  + I   DKR   P  I      GI  F+  L++ K
Sbjct: 180 IFEKTRFRAEEVKSRLHETAYLNPDLTIIFDDKRMESPEHIVYHEPDGILGFIKDLNQKK 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L   PI  +G  + I +++A+++ + +HENVL F NNI   +GGTHL+G ++  T  +
Sbjct: 240 ETLH-EPIYYKGESEGIEVEVALQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVM 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +         
Sbjct: 299 NQYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAAKATGKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D +  + + +    K ++     A+ +R    +A+     K         GKLA+C  R
Sbjct: 359 GDEIVLYFDRNLETLKSVLSCAEKAAKIRKTEEKAKTNLLTKQK-YSFDSNGKLANCESR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DATKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI 
Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 537

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY +  +    +Y+ D+++LE Y         ++ +     + ++      +D   +
Sbjct: 538 MPPLYKVMPKKGEEEYLYDDKALEKYRRMHDGPFTLQRYKGLGEMDAQQLWETTLDPETR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           + KL++        +  E  + + V         N + A 
Sbjct: 598 LLKLVEIEDARMASSVTEMLMGTEVPPRRMFIYENAADAE 637



 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 50/69 (72%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTL+P+TR L  V+I DA  A  +   LMG EV PRR FI E
Sbjct: 572 TLQRYKGLGEMDAQQLWETTLDPETRLLKLVEIEDARMASSVTEMLMGTEVPPRRMFIYE 631

Query: 795 NSLPSALDI 803
           N+  + LDI
Sbjct: 632 NAADAELDI 640


>gi|238018216|ref|ZP_04598642.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC 17748]
 gi|237864687|gb|EEP65977.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC 17748]
          Length = 633

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 306/585 (52%), Positives = 417/585 (71%), Gaps = 4/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A +IQ+L+GLDAV+KRP MYIG T    GLHH++YEV+DN++DE+L GYA  I
Sbjct: 1   MPEENYGAQNIQVLEGLDAVRKRPGMYIGSTS-IRGLHHLVYEVVDNSVDEALAGYATHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF    YKVSGGLHGVG
Sbjct: 60  EVSINEDNSITVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS W K+++ + G I E++F  G   + L   G A   TGT V F P ++IF  
Sbjct: 119 ISVVNALSEWTKVQVAQNGIIQEITFARGHKTSELHEIGKAE-GTGTTVIFKPDAEIFET 177

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             FN+DTL+ RL+EL+FLN  ++I+L D R  EPR  +  Y+GG+ +F+++L+ +K+ + 
Sbjct: 178 TVFNFDTLKIRLQELAFLNKGLRITLSDLRQEEPRVESFHYEGGLSSFIAFLNENKEVVN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            + I I+ ++D++ +D+A+++ND Y EN+L F NNI   DGGTHLSG R+ALTR +  Y 
Sbjct: 238 PTVIDIENTKDDVVVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAALTRTLNDYG 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            KS   K+++ ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEV+ + +  V++GL
Sbjct: 298 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSEGL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + EEHP +AK I++K   AS  R+AAR+ARDLTRRK  L+++SLPGKLADCSE+D   
Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG
Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG++ FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY I
Sbjct: 478 IGEE-FDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +GKS  YV  +  L   L                G ++   L  
Sbjct: 537 KKGKSHWYVYSDAELTAKLDEVGRDGITIQRYKGLGEMNPEQLWE 581



 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 6/203 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +        +   + N E  +   +   +++ + +        + +  + +  +
Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGEEFDITKSRYN 490

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720
            ++      V    +      F +      +    I       L  I  G     +    
Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 549

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            L   +  +GR GI++QRYKGLGEMN  QLWETT+NP+ R++L+V + D+ +AD +F+ L
Sbjct: 550 ELTAKLDEVGRDGITIQRYKGLGEMNPEQLWETTMNPEHRTILQVSLEDSIEADKIFTVL 609

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGD+VEPRR+FI++N+     LD
Sbjct: 610 MGDKVEPRRKFIEDNAKYVRNLD 632


>gi|293376332|ref|ZP_06622569.1| DNA topoisomerase IV, B subunit [Turicibacter sanguinis PC909]
 gi|292645021|gb|EFF63094.1| DNA topoisomerase IV, B subunit [Turicibacter sanguinis PC909]
          Length = 644

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 254/566 (44%), Positives = 374/566 (66%), Gaps = 15/566 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS ++   +Y+ DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNAIDE L GY
Sbjct: 1   MSTHL---NYNEDSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAIDEVLAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ + S +V D+GRG+PT +H + G    EVI T LHAGGKF    YK SGGL
Sbjct: 57  GDHIKVTIHENNSISVQDSGRGVPTGMH-KSGKPTPEVIFTVLHAGGKFGTGGYKTSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS W+++ IKR+GN+Y   F N G     L + G +  +TGT V+F P  
Sbjct: 116 HGVGASVVNALSEWVEVTIKRDGNVYRQRFENGGHPVTGLDIIGKSK-ETGTLVSFKPDP 174

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IFS   +++D L  RLRE +FL   ++I LID R+ +    T +Y+ GI++FVSYL+  
Sbjct: 175 EIFSTTVYSFDILSERLRESAFLLKGLKIELIDLRNDKE--ETFYYEDGIKSFVSYLNEG 232

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +  +G    I +D A +++  Y EN+L F NN+  KDGGTH +G ++ LTR 
Sbjct: 233 KDTLH-DVVYFEGESQEIEVDFAFQYSGSYSENILSFVNNVRTKDGGTHETGAKAVLTRI 291

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  ++   K+ ++++ G D REG  +++S+++P+   +F  QTK KL + E RS V+
Sbjct: 292 FNDYARRNGLLKEKEKNLEGADIREGLAAIVSVRIPENLLQFEGQTKAKLGTPEARSAVD 351

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + + + L+ + EE+   A  ++KK + A+ VR+AAR+AR+   + +       +L GKL 
Sbjct: 352 NVIAEKLTFFFEENGAVATQLIKKAIKAAQVREAARKAREDARSGKTKKKKETNLSGKLT 411

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++P+K+ELFLVEGDSAGGSAK GR+R  QAILPLRGK++N E+A+ + +  ++EI 
Sbjct: 412 PAQTKNPQKNELFLVEGDSAGGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEIN 471

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G + F+++ + Y K+IIMTDAD DGAHI+ LLLTFFFR M  L+  G +Y
Sbjct: 472 TMIYTIGAGVGAN-FELSDVNYDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVY 530

Query: 536 IIKPPLYGITRGKSLQYVKDEESLED 561
           I  PPLY +++G+  + V +    ++
Sbjct: 531 IALPPLYKVSKGQGKKQVVEYAWTDE 556



 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 108/259 (41%), Gaps = 9/259 (3%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +   ++    +   +         +E  L        +KN      ++   ++    
Sbjct: 375 KAIKAAQVREAARKAREDARSGKTKKKKETNLSGKLTPAQTKN---PQKNELFLVEGDSA 431

Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                  +    QA++     V N E  +  ++    ++   +  I      ++  S  N
Sbjct: 432 GGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEINTMIYTIGAGVGANFELSDVN 491

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++           +      F F    + + + ++      +  +     K ++   
Sbjct: 492 YDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVYIALPPLYKVSKGQGKKQVVEY 551

Query: 720 C---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                 L ++ +   KG  +QRYKGLGEMNA QLW+TT+NP+TR+L++V I DA+ AD  
Sbjct: 552 AWTDEELGSVIAKVGKGYMLQRYKGLGEMNADQLWDTTMNPETRTLIQVSIEDAADADHR 611

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRRE+I++N
Sbjct: 612 VTTLMGDKVEPRREWIEQN 630


>gi|331090927|ref|ZP_08339769.1| hypothetical protein HMPREF9477_00412 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405149|gb|EGG84685.1| hypothetical protein HMPREF9477_00412 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 640

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 255/621 (41%), Positives = 370/621 (59%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YDADSI IL+GL+AV+ RP MYIG      GL+H++YE++DNA+DE L G+ + I 
Sbjct: 3   KKNTYDADSISILEGLEAVRVRPGMYIGSVS-TKGLNHLVYEIVDNAVDEHLAGFCNRIE 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGS TVSDNGRG+P  +H++ G+SAA ++ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 62  VTLEKDGSATVSDNGRGVPVGMHQK-GVSAARIVYTTLHAGGKFDDSAYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSSD 180
           SVVNALS+++ ++I R+G ++   +  GI         L V       TGT V FLP   
Sbjct: 121 SVVNALSAYMDVKISRDGAVHHDHYERGIPTIELVDGLLPVIAKTK-KTGTTVNFLPDDT 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + ++ RL E ++LN ++ I   DKR  E   I      GI  F++ L++ K
Sbjct: 180 IFEKTRFKAEEIKSRLHETAYLNPTLTIVFEDKRGAETERIEYHEPNGILGFIADLNQKK 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +   P+  +G  D I +++A ++ + +HENVL F NNI   +GGTHL+G +S  T  +
Sbjct: 240 ETVH-EPVYFKGEADGIEVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKSTFTMVM 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +         
Sbjct: 299 NQYAREIGVLKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNQDAGKATSKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ND ++ + +++    K ++     A+ +R    +A+     K      S  GKLA+C  R
Sbjct: 359 NDEITRFFDKNLDTLKKVLSCAEKAAKIRKTEEKAKTNLLTKQKYSFDS-NGKLANCESR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K E+F+VEGDSAGGSAK  R+R+ QAILP+RGKILNVE+A  DK+L++ EI ++I A
Sbjct: 418 DASKCEIFIVEGDSAGGSAKTARNRQFQAILPIRGKILNVEKASIDKVLANAEINSMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI  G +YI 
Sbjct: 478 FGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIFEGHVYIA 537

Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY  +T+    +Y+ D+++LE Y   Q  +  ++ +     + ++      ++   +
Sbjct: 538 MPPLYKAVTKKGEEEYLYDDKALEKYRRRQKGAYTLQRYKGLGEMDAEQLWDTTLNPETR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           + KLI+           E  +
Sbjct: 598 MLKLIEIEDARMASGVTEMLM 618



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           ++   G++  +      L+      +   ++QRYKGLGEM+A QLW+TTLNP+TR L  +
Sbjct: 544 AVTKKGEEEYLYD-DKALEKYRRRQKGAYTLQRYKGLGEMDAEQLWDTTLNPETRMLKLI 602

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +I DA  A  +   LMG EV PRR FI EN+  + LDI
Sbjct: 603 EIEDARMASGVTEMLMGTEVPPRRAFIYENATEAELDI 640


>gi|329116682|ref|ZP_08245399.1| DNA gyrase, B subunit [Streptococcus parauberis NCFD 2020]
 gi|326907087|gb|EGE54001.1| DNA gyrase, B subunit [Streptococcus parauberis NCFD 2020]
          Length = 650

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 282/617 (45%), Positives = 408/617 (66%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   NDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IEVYIEEDNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALSS L +R+ + G+I+   F  GI+ + L + G   + TGT V F P  +IF+
Sbjct: 128 GSSVVNALSSQLDVRVFKNGSIHYQEFKRGIVYDDLKIIGET-DLTGTTVHFTPDPEIFT 186

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +F+++ L  R++EL+FLN  ++IS+ DKR+   +     Y+GGI ++V +L+  K  
Sbjct: 187 ETVEFDFEKLAKRVQELAFLNRGLRISIADKRNGIEQVKDYHYEGGIASYVEFLNEKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +++ PI   G  D I++++AM++  GYHENV+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IIEHPIFTDGEMDGIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     +D
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSD 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +L E+P  A+ IV K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  + 
Sbjct: 367 ALQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G + FD+ K RYHK++IMTDADVDGAHIRTLLLT  +R M  ++  GF+YI +PP+Y
Sbjct: 487 TGFGAE-FDVAKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGFVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++      + ++ L+  SL  E      S+  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYIQPGTNQEELLKASL--EKYSVGRSRPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
             +    +  ++ A  +
Sbjct: 604 PEHRLMARVTVDDAAEA 620



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 3/87 (3%)

Query: 720 CSLLDTIFS---IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
             LL        +GR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +
Sbjct: 564 EELLKASLEKYSVGRSRPTVQRYKGLGEMDDHQLWETTMDPEHRLMARVTVDDAAEADKV 623

Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803
           F  LMGD VEPRREFI+EN++ S LDI
Sbjct: 624 FDMLMGDRVEPRREFIEENAVYSTLDI 650


>gi|22537312|ref|NP_688163.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae 2603V/R]
 gi|22534182|gb|AAN00036.1|AE014244_13 DNA topoisomerase IV, B subunit [Streptococcus agalactiae 2603V/R]
          Length = 653

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 263/641 (41%), Positives = 391/641 (60%), Gaps = 16/641 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y  D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ + I V 
Sbjct: 13  TNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVI 71

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS TV+D+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 72  INKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 130

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VNALSSWL++ I R+G IY   F N G     L   G+A    +GT V+F+P   +FS  
Sbjct: 131 VNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI 190

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           DF ++T+  RL+E +FL  +V ++L D RS E   +   Y+ G++ FV YL+  K+ L  
Sbjct: 191 DFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP 250

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             +  +G      I++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T+ +  Y  
Sbjct: 251 -IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYAR 309

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K+   K+  +++ G D REG +++LSI +P+   +F  QTK+KL S   R +V+  V++ 
Sbjct: 310 KTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEK 369

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           L+ +L E+   A  +++K + A   R+AAR+ARD     +K   D   L GKL     ++
Sbjct: 370 LTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKN 429

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   ++ ++EI T+I  +
Sbjct: 430 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTI 489

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPL
Sbjct: 490 GAGVG-PDFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPL 548

Query: 542 YGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDAL 595
           Y +++GK  + + +    +   + L  +     +       G ++ + L       +   
Sbjct: 549 YKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRT 608

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            I   I+D      +  +             +  +  +L  
Sbjct: 609 LIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 649



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735
            + +F  +Y R                         +I       + L+ +     KG  
Sbjct: 523 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 582

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+V PRR++I++N
Sbjct: 583 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 642


>gi|21904202|gb|AAM79083.1| putative DNA gyrase, subunit B [Streptococcus pyogenes MGAS315]
          Length = 620

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 266/595 (44%), Positives = 379/595 (63%), Gaps = 6/595 (1%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
            RP MYIG T  E GLHH+++E++DN+IDE+L G+A  I V +  D S TV D+GRGIP 
Sbjct: 1   MRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASHIKVFIEADNSITVVDDGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+  + G  A E + T LHAGGKF   SYKVSGGLHGVG SVVNALS+ L +R+ + G I
Sbjct: 60  DIQVKTGRPAVETVFTVLHAGGKFGGGSYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQI 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNS 204
           +   F  G +   L V     + TGT V F P  +IF     F+Y  L  R++EL+FLN 
Sbjct: 120 HYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNR 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            ++IS+ DKRS   +E    Y+GGI ++V +L+  K  + ++PI   G  + I++++AM+
Sbjct: 179 GLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAVEVAMQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +   Y E V+ F NNI   +GGTH  G R+ALTR I  Y +K+   K+++ ++ G+D RE
Sbjct: 239 YTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLTGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+S+K P+P+F  QTK KL +SEV  +     ++    +L E+P  A+ IV+K + 
Sbjct: 299 GLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGIL 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D  ++ELF+VEGDSAGGSAK GR+
Sbjct: 359 ASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGSAKSGRN 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG G D FD++K RY K++IMT
Sbjct: 419 REFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGAD-FDVSKARYQKLVIMT 477

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DADVDGAHIRTLLLT  +R M  ++  G++YI +PP+YG+  G  ++     +   D   
Sbjct: 478 DADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYI--QPGIDQED 535

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
               + E      SK  + +      +DD    +  +        +  ++ A  +
Sbjct: 536 QLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEA 590



 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 60/76 (78%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 545 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 604

Query: 788 RREFIQENSLPSALDI 803
           RR+FI+EN++ S LDI
Sbjct: 605 RRDFIEENAVYSTLDI 620


>gi|194246593|ref|YP_002004232.1| DNA gyrase, beta subunit [Candidatus Phytoplasma mali]
 gi|193806950|emb|CAP18382.1| DNA gyrase, beta subunit [Candidatus Phytoplasma mali]
          Length = 633

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 267/586 (45%), Positives = 385/586 (65%), Gaps = 7/586 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +   Y+A+SIQ+L+GL+AV+ RP MYIG T+ E GL+H+++E++DNAIDESLEGYA+ I
Sbjct: 3   KKTKIYNAESIQVLEGLEAVRIRPGMYIGSTN-EKGLNHLVWEIVDNAIDESLEGYANEI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +  +    V+DNGRGIP D+H +   +  E I+T LHAGGKF+  SYK+SGGLHGVG
Sbjct: 62  ILEVLPENIIRVTDNGRGIPVDIHPKTNKTVVETILTTLHAGGKFDNSSYKISGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALSSW  + I  +G IY   +  G     L + G+  N  GT +TFLP ++IF  
Sbjct: 122 ASVVNALSSWFLVEIHLQGKIYFQKYEKGKPVTKLEIKGNT-NKKGTVITFLPDNEIFKE 180

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             ++N++ L+ R+++L+FLN  +++ +IDKR     +   +YK G++ ++ YL+++K  L
Sbjct: 181 TTNYNFEILKIRMQQLAFLNKGIKLIIIDKRKDIEEKFEFYYKEGLKEYIKYLNQNKTSL 240

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            +     +   + +  ++  ++ + Y+ N+  F NNIP  DGGTH  G + AL R +  Y
Sbjct: 241 NKE-FYQEKFFEKMFFEIVFQYTEVYNNNIYSFVNNIPTHDGGTHEEGFKMALNRILNKY 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           V+     K    + I +D  EG T V+S+K P+P F SQTK K ++SEVR ++  F  + 
Sbjct: 300 VKDKNMLK-KNINFISEDTLEGLTVVISLKHPNPSFESQTKTKFLNSEVRQIISKFFGEE 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L E+P EAK I++K L +S  R  A++AR+ TRRK  L+      KLADC  ++P+
Sbjct: 359 LEKYLLENPQEAKKIIEKCLLSSKARIDAKKAREATRRKSPLETLGFASKLADCYNKNPQ 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           +SEL++VEGDSAGGSAKQGR  + QAILPL+GK+LNVE+AR +K+LS++EI +LI A+GT
Sbjct: 419 ESELYIVEGDSAGGSAKQGRDSKYQAILPLKGKVLNVEKARLEKILSNKEIISLIQAVGT 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G G+D F+I+K+RYH+IIIMTDADVDGAHIRTLLLTFFFR +  LI  G++Y  K PLY 
Sbjct: 479 GFGKD-FNIDKVRYHRIIIMTDADVDGAHIRTLLLTFFFRNLKPLIEKGYIYFAKSPLYK 537

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  GK + Y  +E+ L+  L   S            G ++   L  
Sbjct: 538 IQYGKKITYAYEEQELKKILSRISGKF-YIQRYKGLGEMNPEQLWE 582



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 8/119 (6%)

Query: 691 RIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQRYKGLGE 744
           R     IE+ Y+    + L  I  G KI        L  I S   G+    +QRYKGLGE
Sbjct: 517 RNLKPLIEKGYIYFAKSPLYKIQYGKKITYAYEEQELKKILSRISGK--FYIQRYKGLGE 574

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           MN  QLWETT+NP+TR+LL+V   +  ++D +F+ LMG+EV  R++FIQ+N++ + LD+
Sbjct: 575 MNPEQLWETTMNPETRTLLQVNSENDLESDQVFNMLMGEEVSVRKKFIQDNAIYADLDV 633


>gi|303230676|ref|ZP_07317426.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302514731|gb|EFL56723.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 633

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 308/585 (52%), Positives = 415/585 (70%), Gaps = 4/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A +IQ+L+GLDAV+KRP MYIG T    GLHH++YEV+DN++DE+L GYA  I
Sbjct: 1   MAEENYGAQNIQVLEGLDAVRKRPGMYIGSTS-IRGLHHLVYEVVDNSVDEALAGYATHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF    YKVSGGLHGVG
Sbjct: 60  EVSINEDNSITVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS W K+++ + G I E+ F  G   + L   G A   TGT V F P S+IF  
Sbjct: 119 ISVVNALSEWTKVQVSQNGIIQEIDFSRGHKTSELHEIGKAE-GTGTTVIFKPDSEIFET 177

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             FN+DTL+ RL+EL+FLN  ++I+L D R  EPR  +  Y+GG+ +F+++L+ +K+ + 
Sbjct: 178 TVFNFDTLKIRLQELAFLNKGLRITLSDLRQEEPRIESFHYEGGLSSFITFLNENKEVVN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            + I I+ ++D++ +D+A+++ND Y EN+L F NNI   DGGTHLSG R+ALTR +  Y 
Sbjct: 238 PTVIDIENTKDDVVVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAALTRTLNDYG 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            KS   K+++ ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEV+ + +  V++GL
Sbjct: 298 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSEGL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + EEHP +AK I++K   AS  R+AAR+ARDLTRRK  L+++SLPGKLADCSE+D   
Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG
Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY I
Sbjct: 478 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +GKS  YV  +  L   L                G ++   L  
Sbjct: 537 KKGKSHWYVYSDAELTAKLDEVGRDGITIQRYKGLGEMNPEQLWE 581



 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 6/203 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +        +   + N E  +   +   +++ + +          +  + +  +
Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 490

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720
            ++      V    +      F +      +    I       L  I  G     +    
Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 549

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            L   +  +GR GI++QRYKGLGEMN  QLWETT+NP+ R++L+V + D+ +AD +F+ L
Sbjct: 550 ELTAKLDEVGRDGITIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVL 609

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGD+VEPRR+FI++N+     LD
Sbjct: 610 MGDKVEPRRKFIEDNAKYVRNLD 632


>gi|229134401|ref|ZP_04263214.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST196]
 gi|229168314|ref|ZP_04296039.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH621]
 gi|228615140|gb|EEK72240.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH621]
 gi|228649022|gb|EEL05044.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST196]
          Length = 654

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 267/663 (40%), Positives = 399/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+G+IYE  F N G     L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  S++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L D          ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSLLDTIFSIGRKGISM 736
             F +      I + ++      +  +     K ++         L D    +G KG  +
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVG-KGYML 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QRYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+   + LMGD+VEPRR++I+ N
Sbjct: 573 QRYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631


>gi|239628764|ref|ZP_04671795.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518910|gb|EEQ58776.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 736

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 276/592 (46%), Positives = 372/592 (62%), Gaps = 11/592 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A  IQIL+GL+AV+KRPSMYIG+T  + GLHHM+YE++DNA+DE+L GY   I V
Sbjct: 85  SPDYGAAQIQILEGLEAVRKRPSMYIGNTSAQ-GLHHMVYEIVDNAVDEALAGYCTEIEV 143

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            LN D S TV DNGRGIP  +  + G+SA +V+ T LHAGGKF+  SYKVSGGLHGVG S
Sbjct: 144 YLNPDNSVTVHDNGRGIPAGIQSKTGLSAIQVVFTVLHAGGKFDNSSYKVSGGLHGVGAS 203

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS LK+++ ++G  Y  S+  GI   P+ V G+    + GT VTF P  +IF   
Sbjct: 204 VVNALSSRLKVKVDQDGYSYVQSYERGIPLGPVRVQGTCSSQEHGTTVTFWPDGEIFKDC 263

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDK-------RSPEPREITMFYKGGIEAFVSYLDR 238
            F+ +TL+  ++E +FL S + I+L D          P+       Y+ G++ FV +++ 
Sbjct: 264 HFHPETLRQHMQETAFLMSGLTITLYDHSESRDQDNHPDAPVWRFCYQDGLKDFVKFING 323

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +  L Q  +  Q   D +  + A+  N G+ E +  F NNI   +GGTH++G R ALTR
Sbjct: 324 PEPTLYQDILYGQSGTDEVLAEFALIHNTGFDEKLRSFANNISTPEGGTHVTGFRQALTR 383

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K+   S+  ++  EG T+V+S+++ +P+F  QTK++L SS  R V++ 
Sbjct: 384 AINDYARKQGMLKESDPSISREELSEGMTAVISVRLKEPQFEGQTKQRLGSSSARPVMDH 443

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V   L+ +LE++PL AK I+ K + A   R AAR AR++ RRK  L   SLPGKLADCS
Sbjct: 444 LVYTKLTLFLEQNPLAAKAIINKAVLAKKARAAARSAREMARRKTALSGLSLPGKLADCS 503

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+PK  ELF+VEGDSAGGSAK  R RENQA+LPLRGKILNVE+   DK+ ++ EI  +I
Sbjct: 504 SRNPKDCELFIVEGDSAGGSAKMARCRENQAVLPLRGKILNVEKTTLDKVCANAEIKAMI 563

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           +A GTGI  D F ++ LRYHKII+MTDADVDGAHI TLLLTF FR MP LI  G +Y+ +
Sbjct: 564 SAFGTGI-MDGFSLDGLRYHKIILMTDADVDGAHITTLLLTFLFRFMPRLIEAGHVYLAQ 622

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPL+ + +GK L Y   +  L   L +               G +    L  
Sbjct: 623 PPLFRVEKGKKLWYAYSDSELSQILEDIGRDGNYKIQRYKGLGEMDAKQLWE 674



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 13/114 (11%)

Query: 703 TILSLICNGDKI-KITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTR 760
             L  +  G K+        L   +  IGR G   +QRYKGLGEM+A QLWETT++P  R
Sbjct: 623 PPLFRVEKGKKLWYAYSDSELSQILEDIGRDGNYKIQRYKGLGEMDAKQLWETTMDPSRR 682

Query: 761 SLLRVKITD----------ASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           +LLRV   D           S+   +F  LMGD+VEPR+ +I E++  +  LD+
Sbjct: 683 TLLRVGAADSHDTFGQDSSESETSRIFRILMGDDVEPRKNYILEHAQYTTMLDV 736


>gi|260101874|ref|ZP_05752111.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           helveticus DSM 20075]
 gi|260084302|gb|EEW68422.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           helveticus DSM 20075]
 gi|328468764|gb|EGF39735.1| DNA gyrase subunit B [Lactobacillus helveticus MTCC 5463]
          Length = 654

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 400/626 (63%), Gaps = 19/626 (3%)

Query: 1   MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48
           M+DN + +             Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E+
Sbjct: 1   MADNSKKNLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN+IDE L G+A  I +T+N DGS TV D+GRGIP D+ K+ G  A E + T LHAGGK
Sbjct: 60  IDNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQKKTGRPALETVFTVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167
           F    YKVSGGLHGVG SVVNALS+ L + + R+G  Y + F +G + + +   G+    
Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLE 179

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             GT V F P  DIF     F+   L++R+REL+FLN  ++++  DKR          Y+
Sbjct: 180 QHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDSAETDVYKYE 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+ +V++L++ ++ L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG
Sbjct: 240 GGIKEYVAFLNKGQEVLFDEPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H +G ++ALTR +  Y  K+   K    ++ G+D REG T+V+S+K P P+F  QTK K
Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTK 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+ R+ V+   ++  S +L E+P   + IV+K   A   R AA+ AR++TR+K  L+
Sbjct: 360 LGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKHAREVTRKKSGLE 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D
Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M 
Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585
            +I  G++YI +PPLY + +GK ++Y+  +E L DYL +   S + +       G +   
Sbjct: 539 PMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPVVQRYKGLGEMDPE 598

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611
            L          ++ +    P + K 
Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622



 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 125/369 (33%), Gaps = 35/369 (9%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            PS    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 407 HAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTI--FSIGRKGI 734
                  +      I    +       L  +  G  IK +     L D +       K +
Sbjct: 527 TLLLTLFYNYMRPMIEKGYVY-IARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPV 585

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRR+FIQ+
Sbjct: 586 -VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRDFIQK 644

Query: 795 NSLPS-ALD 802
           N+     LD
Sbjct: 645 NAKYVENLD 653


>gi|25026562|ref|NP_736616.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314]
 gi|23491841|dbj|BAC16816.1| putative DNA gyrase subunit B [Corynebacterium efficiens YS-314]
          Length = 687

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 283/692 (40%), Positives = 398/692 (57%), Gaps = 54/692 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +YDA SI IL+GL+AV+KRP MYIG T G  GLHH+I+EV+DN++DE++ GY
Sbjct: 1   MANT--EHNYDASSITILEGLEAVRKRPGMYIGST-GSRGLHHLIWEVVDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD + VTL  DG   V DNGRGIP ++H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 58  ADRVDVTLLEDGGVEVIDNGRGIPVEMHAS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IK++G  +  +F N I    L V G+    TGT + F P ++
Sbjct: 117 HGVGISVVNALSTRVEAHIKKDGKHWYQNFNNSIP-EDL-VEGANARGTGTSIRFWPDAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----------------------- 217
           IF   DF++DT+  RL+E++FLN  + ++L D R+ +                       
Sbjct: 175 IFETTDFDFDTISRRLQEMAFLNKGLTMTLTDNRASDEELELEALAEQGDTAVELSLDQI 234

Query: 218 -----------------------PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
                                   ++    Y  G+E +V++L+R K P+  S +  +   
Sbjct: 235 DADGETQLVDAEVTDAPKKPKKREKKKIFHYPNGLEDYVNHLNRTKTPIHPSIVSFEAKA 294

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
               +++AM+WN  Y E+V  F N I   +GGTH  G RSALT  +  Y  +    K+ +
Sbjct: 295 AEHEVEIAMQWNSSYKESVHTFANTINTFEGGTHEEGFRSALTSLMNRYAREHKLLKEKE 354

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            ++ GDDCREG ++V+S+++ +P+F  QTK KL ++E++S V+   N+ +  WLE +P E
Sbjct: 355 ANLTGDDCREGLSAVISVRVSEPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAE 414

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AK+I+ K + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP+KSEL++VEGDS
Sbjct: 415 AKVIINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDS 474

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           AGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDINK
Sbjct: 475 AGGSAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNSEVQAIITALGTGI-HDEFDINK 533

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYV 553
           LRYHKI++M DADVDG HI TLLLT  FR MP LI  G +Y+ +PPLY +   +    + 
Sbjct: 534 LRYHKIVLMADADVDGQHIATLLLTLLFRFMPDLIAEGHVYLAQPPLYKLKWQRGEPGFA 593

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
             +E  +  L     +       D           N  +                D    
Sbjct: 594 YSDEERDQQLEEGLAAGRKINKDDGIQRYKGLGEMNPNELWETTMDPSVRILRRVDLADA 653

Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFI 645
           ++A          D     S  ++ A  + F+
Sbjct: 654 QRADELFSILMGDDVVARRSFITRNAKDVRFL 685



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 6/86 (6%)

Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L+   + GRK I+    +QRYKGLGEMN ++LWETT++P  R L RV + DA +AD+LFS
Sbjct: 603 LEEGLAAGRK-INKDDGIQRYKGLGEMNPNELWETTMDPSVRILRRVDLADAQRADELFS 661

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMGD+V  RR FI  N+     LD+
Sbjct: 662 ILMGDDVVARRSFITRNAKDVRFLDV 687


>gi|319947116|ref|ZP_08021350.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus australis
           ATCC 700641]
 gi|319747164|gb|EFV99423.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus australis
           ATCC 700641]
          Length = 649

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 272/649 (41%), Positives = 391/649 (60%), Gaps = 17/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I VT+N DGS +V+D GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGSQIDVTINKDGSLSVADQGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   GSA    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLEKIGSAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF ++T+  R++E +FL   V ++L D R  E   +   Y+ G++ FV YL+
Sbjct: 179 DATIFSTTDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDNHVAFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L        G  +   +++A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 239 EDKETLTPVL-YFNGESEGFQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARPV 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++  K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A    +L ++E
Sbjct: 418 LTPAQSKNAAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FTIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LED          ++ +     + +      
Sbjct: 537 VYIAMPPLYKMSKGKGKKEEVAYAWTDSELEDLRRTFGRGATLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            ++   +  I   I D      +  +     +       +  +  +L  
Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 10/260 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNAAKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E     ++    ++   +  I       +     N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNEEINTMIYTIGAGVGADFTIEDANY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKIT 717
           D ++           +   + + +F  +Y R                      G K ++ 
Sbjct: 501 DKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVEAGRVYIAMPPLYKMSKGKGKKEEVA 558

Query: 718 G--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                S L+ +     +G ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ 
Sbjct: 559 YAWTDSELEDLRRTFGRGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAER 618

Query: 776 LFSRLMGDEVEPRREFIQEN 795
             S LMGD+  PRR++I++N
Sbjct: 619 RVSVLMGDKAAPRRQWIEDN 638


>gi|312864869|ref|ZP_07725100.1| DNA topoisomerase IV, B subunit [Streptococcus downei F0415]
 gi|311099996|gb|EFQ58209.1| DNA topoisomerase IV, B subunit [Streptococcus downei F0415]
          Length = 647

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 275/650 (42%), Positives = 398/650 (61%), Gaps = 21/650 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MTKKEISITNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V L+ DGS +V+D+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIEVVLHQDGSVSVTDSGRGMPTGMHA-TGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G IY+  F N G     L   G+A    +GT+VTF P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTELEKIGTAPKSKSGTKVTFKP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V + L D+R+ E   +   Y+ G++ FV YL+
Sbjct: 179 DDSIFSTTDFKFNTISERLKESAFLLKEVTLVLKDERTEEE--VEFHYENGVQDFVHYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I  +G      + +AM++NDG+ +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTP-VIYFEGEDQGFQVQVAMQYNDGFSDNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K   +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KAMNDYARKTGLLKDKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V+D L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGLVSDQLTFFLMENGELASSLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 416 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMPDILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F ++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-PDFSLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  LED    +     +       G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEDLR-QKFGRGALLQRYKGLGEMNADQLWE 593

Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                D+   I   I+D      +  +     +       +  +  +L  
Sbjct: 594 TTMDPDNRTLIRVTIEDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 643



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     +G  
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEQVEYAWTDGELEDLRQKFGRGAL 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT++PD R+L+RV I D ++A+   S LMGD+  PRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMDPDNRTLIRVTIEDLARAERRVSVLMGDKAAPRRQWIEDN 636


>gi|116491823|ref|YP_803558.1| DNA gyrase subunit B [Pediococcus pentosaceus ATCC 25745]
 gi|116101973|gb|ABJ67116.1| DNA gyrase subunit B [Pediococcus pentosaceus ATCC 25745]
          Length = 648

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 287/598 (47%), Positives = 395/598 (66%), Gaps = 11/598 (1%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D  +        YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE
Sbjct: 1   MADEKETKAELAREYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +  D S TV+DNGRGIP D+ K+ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFADKIDVIVEKDNSITVTDNGRGIPVDIQKKTGKPALETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEV 173
           VSGGLHGVG SVVNALS+ L  R+ ++G IY + F  G +  P+   G   +    GT V
Sbjct: 120 VSGGLHGVGASVVNALSTELDARVMKDGKIYYIDFALGKVKTPMKTIGDTEHPDDHGTIV 179

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  DIF     ++ + L+ R+REL+FLN  ++I+L D R  +P E    Y+GGI  +
Sbjct: 180 HFVPDPDIFQETTTYDINILKTRIRELAFLNKGLRITLKDMRPEKPTEDDFLYEGGIRHY 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+  K+ +   PI ++G    I++++AM++ +GY   +L FTNNI   +GGTH  G 
Sbjct: 240 VEYLNEGKEVIFPEPIYVEGVTKGITVEVAMQYIEGYQSKLLTFTNNIHTYEGGTHEEGF 299

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           + ALTR I  Y + +   K++   + GDD REG T+V+S+K PDP+F  QTK KL +S+ 
Sbjct: 300 KRALTRVINDYAKNNNILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDA 359

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+ V     +  + +L E+P  A+ IV K + A+  R AA+RAR++TR+K  L++ +LPG
Sbjct: 360 RTAVNEVFAETFNKFLLENPKVARQIVDKGILAAKARVAAKRAREVTRKKSGLELNNLPG 419

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLAD + +DP  SELF+VEGDSAGGSAK GRSR  QAILP+RGKILNVE+A  D++L+++
Sbjct: 420 KLADNTSKDPSISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKATLDRVLANE 479

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI +L TALGTG G+D FD++K  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G
Sbjct: 480 EIRSLFTALGTGFGED-FDVSKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAG 538

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           F+YI +PPLY + +GK +QY+  +E LE  L   S S + +       G +    L  
Sbjct: 539 FVYIAQPPLYQVRQGKMIQYIDSDEELETVLGQLSPSPKPVIQRYKGLGEMDAEQLWE 596



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 14/191 (7%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      V    ++ +    +     + +  S  N   L+      V    +   +
Sbjct: 464 ILNVEKATLDRVLANEEIRSLFTALGTGFGEDFDVSKANYHKLIIMTDADVDGAHI--RT 521

Query: 681 SIFSFGSKYKRIF-SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS---- 735
            + +   +Y R              L  +  G  I+       L+T+       +S    
Sbjct: 522 LLLTLFYRYMRPMIDAGFVYIAQPPLYQVRQGKMIQYIDSDEELETVLGQ----LSPSPK 577

Query: 736 --MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
             +QRYKGLGEM+A QLWETT+NP+ R LLRV   DA  A   F  LMGD+VEPRR+FI+
Sbjct: 578 PVIQRYKGLGEMDAEQLWETTMNPENRRLLRVSAEDADAASGDFEMLMGDKVEPRRKFIE 637

Query: 794 ENSLPS-ALDI 803
           EN++    LDI
Sbjct: 638 ENAVFVKNLDI 648


>gi|328957567|ref|YP_004374953.1| DNA topoisomerase 4 subunit B [Carnobacterium sp. 17-4]
 gi|328673891|gb|AEB29937.1| DNA topoisomerase 4 subunit B [Carnobacterium sp. 17-4]
          Length = 675

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 254/601 (42%), Positives = 367/601 (61%), Gaps = 16/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M   + N  Y+ DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 10  MPKEL-NKEYNDDSIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEALSGF 67

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VTL+ D S +V DNGRG+P  +H   GI   +VI T LHAGGKF Q  YK SGGL
Sbjct: 68  GTEIDVTLHKDNSISVKDNGRGMPIGMHSS-GIPTVQVIFTVLHAGGKFGQGGYKTSGGL 126

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSF-INGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I REG  Y+  F   G     L    +     GT V F P  
Sbjct: 127 HGVGASVVNALSEWLTVTIIREGVHYQQKFVEGGKAKGSLKKIKTNNEKNGTIVHFKPDP 186

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF+  + +YD L  RLRE +FL   ++I+L D+R+ +      +Y+ GI+ FVSYL+  
Sbjct: 187 TIFTTTNLSYDVLAERLRESAFLLKGLRITLTDERNEQS--EVFYYEEGIKEFVSYLNED 244

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L       +G  + I ++ + ++NDGY E +L F NN+  KDGGTH +G+++A+T+ 
Sbjct: 245 KDNLTPVA-YFEGENNEIEVEFSFQYNDGYSETILSFVNNVRTKDGGTHEAGMKTAITKT 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+ ++++ G D REG  +V+SI++P+   +F  QTK KL + + RS VE
Sbjct: 304 FNEYARKVNLLKEKEKNLEGTDFREGLAAVISIRIPENLLQFEGQTKSKLGTPQARSAVE 363

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V+D L+ +L E+   ++ +++K L A   RDAAR+AR+     +K   +   L GKL 
Sbjct: 364 TVVSDQLNFYLIENGDLSQQLIRKALKAREARDAARKAREESRNGKKRKKNDTLLSGKLT 423

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ K++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   ++ ++EI 
Sbjct: 424 PAQSKNAKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKLQDVMKNEEIS 483

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   FDI    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L   G +Y
Sbjct: 484 TMIYTIGAGVG-PEFDIADCNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLFEAGKVY 542

Query: 536 IIKPPLYG----ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           +  PPLY     I + + + Y   ++ L     +   +  ++ +     + +       +
Sbjct: 543 LALPPLYKLSRGIGKKEKIAYAWTDDELVQVTKDFGKNYILQRYKGLGEMNADQLWDTTM 602

Query: 592 D 592
           +
Sbjct: 603 N 603



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 103/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  +D               +      S  +          ++   ++     
Sbjct: 385 IRKALKAREARDAARKAREESRNGKKRKKNDTLLSGKLTPAQSKNAKRNELYLVEGDSAG 444

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  +V    +++  +  I       +  +  N 
Sbjct: 445 GSAKQGRDRKFQAILPLRGKVINTEKAKLQDVMKNEEISTMIYTIGAGVGPEFDIADCNY 504

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +        + ++      +  L    G K KI   
Sbjct: 505 DKIIIMTDADTDGAHIQTLLLTFFYRYMKPLFEAGKVYLALPPLYKLSRGIGKKEKIAYA 564

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L+      G K   +QRYKGLGEMNA QLW+TT+NP+TR+L+RVKI DA+QA+  
Sbjct: 565 WTDDELVQVTKDFG-KNYILQRYKGLGEMNADQLWDTTMNPETRTLIRVKIDDAAQAEKR 623

Query: 777 FSRLMGDEVEPRREFIQEN 795
            S LMGD+VEPRR++I+ +
Sbjct: 624 VSVLMGDKVEPRRKWIESH 642


>gi|322388186|ref|ZP_08061790.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           infantis ATCC 700779]
 gi|321140858|gb|EFX36359.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           infantis ATCC 700779]
          Length = 648

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 281/626 (44%), Positives = 408/626 (65%), Gaps = 9/626 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+++I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEDIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIEVFIEPDDSITVIDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLEVIGDT-DKTGTIVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  ++I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMEDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLLENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         SK  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIRLQEAL--ARYSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMNPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT+NP+
Sbjct: 546 KVGSEIKEYIQPGADQEIR-LQEALAR-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|145294048|ref|YP_001136869.1| DNA gyrase subunit B [Corynebacterium glutamicum R]
 gi|140843968|dbj|BAF52967.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 684

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 279/689 (40%), Positives = 396/689 (57%), Gaps = 51/689 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +YDA SI IL+GL+AV+KRP MYIG T G  GLHH+I+EV+DN++DE++ G+
Sbjct: 1   MANT--EHNYDASSITILEGLEAVRKRPGMYIGST-GPRGLHHLIWEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + VTL  DG   V D+GRGIP D+H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 58  ATKVEVTLLEDGGVQVVDDGRGIPVDMHPS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IK  G  +  +F   + D  +   G     TGT + F P ++
Sbjct: 117 HGVGISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----------------------- 217
           IF   +F+++T+  RL+E++FLN  + I+L D R+ +                       
Sbjct: 175 IFETTEFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEI 234

Query: 218 --------------------PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
                                ++    Y  G+E +V YL+R K  +  S +  +   D+ 
Sbjct: 235 DNETELVEETTDAPKKPKKREKKKIFHYPNGLEDYVQYLNRSKTNIHPSIVSFEAKGDDH 294

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++AM+WN  Y E+V  F N I  ++GGTH  G RSALT  +  Y  +    K+ + ++
Sbjct: 295 EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANL 354

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDDCREG ++V+S+++ DP+F  QTK KL ++E++S V+   N+ +  WLE +P EAK+
Sbjct: 355 TGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKV 414

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I+ K + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP+KSEL++VEGDSAGG
Sbjct: 415 IINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGG 474

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           SAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDINKLRY
Sbjct: 475 SAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDINKLRY 533

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDE 556
           HKI++M DADVDG HI TLLLT  FR MP L+  G +Y+ +PPLY +   +    +   +
Sbjct: 534 HKIVLMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSD 593

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
           E  ++ L     +       D           N  +                D T  ++A
Sbjct: 594 EERDEQLNEGLAAGRKINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRA 653

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFI 645
                     D     S  ++ A  + F+
Sbjct: 654 DELFSILMGDDVVARRSFITRNAKDVRFL 682



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/86 (56%), Positives = 60/86 (69%), Gaps = 6/86 (6%)

Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L+   + GRK I+    +QRYKGLGEMNAS+LWETT++P  R L RV ITDA +AD+LFS
Sbjct: 600 LNEGLAAGRK-INKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRADELFS 658

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMGD+V  RR FI  N+     LDI
Sbjct: 659 ILMGDDVVARRSFITRNAKDVRFLDI 684


>gi|186686392|ref|YP_001869588.1| DNA gyrase subunit B [Nostoc punctiforme PCC 73102]
 gi|186468844|gb|ACC84645.1| DNA gyrase, B subunit [Nostoc punctiforme PCC 73102]
          Length = 645

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 295/646 (45%), Positives = 407/646 (63%), Gaps = 15/646 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L G+   I V
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGHCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV+D+GRGIP D H   G SA E +MT LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  DINADGSVTVTDDGRGIPVDTHSRTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  +++ + R+  ++   +  GI    L         TGT VTF P + IF+   
Sbjct: 121 VVNALSEVVEVTVWRDKKVHLQRYERGIPVTELQTKPYKEARTGTSVTFKPDTQIFTTSI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+Y TL  RLREL++LN+ V+I+  D R     S  P+  +  YKGGI+ +++Y++R K
Sbjct: 181 EFDYITLSGRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYNYKGGIKEYIAYMNREK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +PL +  I +QG R+N+ ++++++W  D Y +NVL F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QPLHEEIIYVQGERNNVQVEVSLQWCTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +   K    K+++ ++ G+  REG T+V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 LNAIARKRNKIKENEPNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +LE HP  A  I+ K + A    +AAR AR+L RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLTEYLEFHPAIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP +SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + E+ +LIT
Sbjct: 421 RDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG G+  D FD N+LRYH+I+IMTDADVDGAHIRTLLLTFF+R   SLI  GF+YI  P
Sbjct: 481 ALGLGVKGDEFDSNQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598
           PL+ + RG++ +Y   +      +     +           G +    L +       ++
Sbjct: 541 PLFKVERGRNHEYCYSDREKNQAIAKFPANANYTIQRFKGLGEMMPQQLWDT-----TMN 595

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +       +   E   I  +   +              ++LNF
Sbjct: 596 PETRKMKQVEIEDAAEADRIFTILMGDRV-APRREFIETYGSKLNF 640



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 18/162 (11%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYL----TILS 706
              +++ +   RI   +     ++G+ I +    F  +Y+R     IE+ ++      L 
Sbjct: 489 DEFDSNQLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQRSL---IEQGFIYIACPPLF 543

Query: 707 LICNGDKIK-ITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
            +  G   +           I         ++QR+KGLGEM   QLW+TT+NP+TR + +
Sbjct: 544 KVERGRNHEYCYSDREKNQAIAKFPANANYTIQRFKGLGEMMPQQLWDTTMNPETRKMKQ 603

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
           V+I DA++AD +F+ LMGD V PRREFI+          LDI
Sbjct: 604 VEIEDAAEADRIFTILMGDRVAPRREFIETYGSKLNFTDLDI 645


>gi|322389902|ref|ZP_08063442.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 903]
 gi|321143338|gb|EFX38776.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 903]
          Length = 649

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 284/657 (43%), Positives = 421/657 (64%), Gaps = 17/657 (2%)

Query: 1   MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+++ Q  +    YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+
Sbjct: 1   MTEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKV
Sbjct: 60  LAGFASHIEVFIEADNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS+ L +R+ + G+I+   +  G + + L + G   + TGT V F+
Sbjct: 120 SGGLHGVGSSVVNALSTSLDVRVYKNGSIHYQEYRRGHVVDDLKIIGET-DRTGTTVHFI 178

Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P  +IF+    ++++ L  R++EL+FLN  ++ISL DKR    +E    Y+GGI ++V Y
Sbjct: 179 PDPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLEQEKHYHYEGGISSYVEY 238

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH  G R+A
Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +
Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLA
Sbjct: 359 TNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI 
Sbjct: 419 DCSSNNPEETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +L TA+GTG G + FD+ K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++Y
Sbjct: 479 SLFTAMGTGFGAE-FDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PP+YG+  G  ++     +   +     + + E      SK  I +      +DD  
Sbjct: 538 IAQPPIYGVKVGSEIKEYI--QPGANQEAELAAALERYSEGRSKPTIQRYKGLGEMDDHQ 595

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
             +  +   +    +  ++ A  +                 ++  R  FI E +E S
Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKIFDMLM-------GDRVEPRREFIEENAEYS 645



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +     + L+  +S GR   ++QRYKGLGEM+  QLWETT+NP+
Sbjct: 547 KVGSEIKEYIQPGANQEAE-LAAALER-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 604

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN+  S LD+
Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAEYSTLDV 649


>gi|19551255|ref|NP_599257.1| DNA gyrase subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|62388898|ref|YP_224300.1| DNA gyrase subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|41324231|emb|CAF18571.1| DNA GYRASE SUBUNIT B [Corynebacterium glutamicum ATCC 13032]
          Length = 684

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 279/689 (40%), Positives = 396/689 (57%), Gaps = 51/689 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +YDA SI IL+GL+AV+KRP MYIG T G  GLHH+I+EV+DN++DE++ G+
Sbjct: 1   MANT--EHNYDASSITILEGLEAVRKRPGMYIGST-GPRGLHHLIWEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + VTL  DG   V D+GRGIP D+H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 58  ATKVEVTLLEDGGVQVVDDGRGIPVDMHPS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IK  G  +  +F   + D  +   G     TGT + F P ++
Sbjct: 117 HGVGISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----------------------- 217
           IF   +F+++T+  RL+E++FLN  + I+L D R+ +                       
Sbjct: 175 IFETTEFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEI 234

Query: 218 --------------------PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
                                ++    Y  G+E +V YL+R K  +  S +  +   D+ 
Sbjct: 235 DNETELVEETTDAPKKPKKREKKKIFHYPNGLEDYVHYLNRSKTNIHPSIVSFEAKGDDH 294

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++AM+WN  Y E+V  F N I  ++GGTH  G RSALT  +  Y  +    K+ + ++
Sbjct: 295 EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANL 354

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDDCREG ++V+S+++ DP+F  QTK KL ++E++S V+   N+ +  WLE +P EAK+
Sbjct: 355 TGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKV 414

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I+ K + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP+KSEL++VEGDSAGG
Sbjct: 415 IINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGG 474

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           SAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDINKLRY
Sbjct: 475 SAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDINKLRY 533

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDE 556
           HKI++M DADVDG HI TLLLT  FR MP L+  G +Y+ +PPLY +   +    +   +
Sbjct: 534 HKIVLMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSD 593

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
           E  ++ L     +       D           N  +                D T  ++A
Sbjct: 594 EERDEQLNEGLAAGRKINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRA 653

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFI 645
                     D     S  ++ A  + F+
Sbjct: 654 DELFSILMGDDVVARRSFITRNAKDVRFL 682



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/86 (56%), Positives = 60/86 (69%), Gaps = 6/86 (6%)

Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L+   + GRK I+    +QRYKGLGEMNAS+LWETT++P  R L RV ITDA +AD+LFS
Sbjct: 600 LNEGLAAGRK-INKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRADELFS 658

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMGD+V  RR FI  N+     LDI
Sbjct: 659 ILMGDDVVARRSFITRNAKDVRFLDI 684


>gi|319745151|gb|EFV97474.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus agalactiae
           ATCC 13813]
          Length = 653

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 262/641 (40%), Positives = 391/641 (60%), Gaps = 16/641 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y  D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ + I V 
Sbjct: 13  TNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVI 71

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS TV+D+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 72  INKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 130

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VNALSSWL++ I R+G IY   F N G     L   G+A    +GT V+F+P   +FS  
Sbjct: 131 VNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI 190

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           DF ++T+  RL+E +FL  +V ++L D RS E   +   Y+ G++ FV YL+  K+ L  
Sbjct: 191 DFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP 250

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             +  +G      I++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T+ +  Y  
Sbjct: 251 -IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYAR 309

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K+   K+  +++ G D REG +++LSI +P+   +F  QTK+KL S   R +V+  V++ 
Sbjct: 310 KTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEK 369

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           L+ +L E+   A  +++K + A   R+AAR+ARD     +K   D   L GKL     ++
Sbjct: 370 LTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKN 429

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   ++ ++EI T+I  +
Sbjct: 430 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTI 489

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++ + Y K+IIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPL
Sbjct: 490 GAGVG-PDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPL 548

Query: 542 YGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDAL 595
           Y +++GK  + + +    +   + L  +     +       G ++ + L       +   
Sbjct: 549 YKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRT 608

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            I   I+D      +  +             +  +  +L  
Sbjct: 609 LIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 649



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735
            + +F  +Y R                         +I       + L+ +     KG  
Sbjct: 523 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 582

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+V PRR++I++N
Sbjct: 583 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 642


>gi|298246161|ref|ZP_06969967.1| DNA gyrase, B subunit [Ktedonobacter racemifer DSM 44963]
 gi|297553642|gb|EFH87507.1| DNA gyrase, B subunit [Ktedonobacter racemifer DSM 44963]
          Length = 668

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 280/593 (47%), Positives = 390/593 (65%), Gaps = 11/593 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + N  N+ Y   +IQIL+GL+AV+ RP MYIG TD + GLHH+I EV+DN++DE + GYA
Sbjct: 31  TQNHGNNGYSGQNIQILEGLEAVRVRPGMYIGATD-QRGLHHLIQEVVDNSVDEVMAGYA 89

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           D I VT++ DGS T+ DNGRGIP + H +  G+S  EV+MT LHAGGKF    Y++S GL
Sbjct: 90  DTIQVTIHADGSVTIEDNGRGIPVEEHHQRPGMSTLEVVMTVLHAGGKFGGGGYQISSGL 149

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W ++ ++R+G +Y   +  G     L   G +   TGT  +F+P   
Sbjct: 150 HGVGVSVVNALSEWCQVDVRRDGKVYRQRYEKGTPVTKLAAVG-SFEGTGTRTSFMPDLS 208

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +   +D+N+D L  R RE+++LN  + I + D+RS   RE T +++GG+ +FV YL++++
Sbjct: 209 VMETRDYNFDMLAQRFREMAYLNRGMTICIRDERSD--REATFYFEGGLVSFVRYLNKNR 266

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L   P       D + +D+A+++ND +      F N I   DGG H++G RSALTR +
Sbjct: 267 NTLQARPASASREIDKVKVDIALQYNDSWSTTEFSFANGINTVDGGMHITGFRSALTRSL 326

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K+   K+   ++ GDD R+G   V+S+K+P+P+F +QTK KL ++E+R +VE+  
Sbjct: 327 NDYARKTGLLKEKDPNLTGDDVRQGLAVVVSVKIPNPQFEAQTKSKLNNAEIRPIVENIT 386

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L+ +LEE P EAK I+ K L ++  R+AAR ARDL +RK VL   +LPGKLADCSER
Sbjct: 387 ADMLNRYLEETPSEAKAIISKCLTSAKAREAARAARDLVQRKNVL-DTTLPGKLADCSER 445

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
              + EL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVER   DK+L ++E+  +ITA
Sbjct: 446 RADRCELYLVEGDSAGGSAKQGRDRHFQAILPLRGKILNVERVTLDKILHNEEVKNIITA 505

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G GIG+  F++++LRY +++IM DADVDGAHIRTLLLTFF+R MP LI  G LYI +PP
Sbjct: 506 VGVGIGEQ-FNLSRLRYGRVVIMCDADVDGAHIRTLLLTFFYRYMPELIGGGHLYIAQPP 564

Query: 541 LYGITRGKSLQYVKDEESLE----DYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY +  GK + +V  EE  +    +Y    +  E         G ++   L  
Sbjct: 565 LYHVKFGKQVHFVYTEEERDALINEYKATHNGKEPEVGRYKGLGEMNPETLWE 617



 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 8/202 (3%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +  +   +   + N E      +    ++ N +  +     + ++ S      +V  
Sbjct: 470 RHFQAIL--PLRGKILNVERVTLDKILHNEEVKNIITAVGVGIGEQFNLSRLRYGRVVIM 527

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F +    + I    +       L  +  G ++         D +
Sbjct: 528 CDADVDGAHIRTLLLTFFYRYMPELIGGGHLY-IAQPPLYHVKFGKQVHFVYTEEERDAL 586

Query: 727 FSIGR-----KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
            +  +     K   + RYKGLGEMN   LWETT++P+ R++L+V + +A +AD +FS LM
Sbjct: 587 INEYKATHNGKEPEVGRYKGLGEMNPETLWETTMDPERRTILKVSVDEAVEADKVFSMLM 646

Query: 782 GDEVEPRREFIQENSLPSALDI 803
           GDEV PRR FI+ ++  + LDI
Sbjct: 647 GDEVAPRRRFIESHARNANLDI 668


>gi|168484465|ref|ZP_02709417.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1873-00]
 gi|73916352|gb|AAZ93044.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|172042299|gb|EDT50345.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1873-00]
 gi|332203962|gb|EGJ18029.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA47368]
          Length = 648

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVYVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|108796987|ref|YP_637184.1| DNA gyrase subunit B [Mycobacterium sp. MCS]
 gi|119866071|ref|YP_936023.1| DNA gyrase subunit B [Mycobacterium sp. KMS]
 gi|126432619|ref|YP_001068310.1| DNA gyrase subunit B [Mycobacterium sp. JLS]
 gi|108767406|gb|ABG06128.1| DNA gyrase subunit B [Mycobacterium sp. MCS]
 gi|119692160|gb|ABL89233.1| DNA gyrase subunit B [Mycobacterium sp. KMS]
 gi|126232419|gb|ABN95819.1| DNA gyrase subunit B [Mycobacterium sp. JLS]
          Length = 675

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 271/678 (39%), Positives = 382/678 (56%), Gaps = 38/678 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+       + Y ADSI++L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE++ 
Sbjct: 1   MAAQKKNAPAEYGADSIKVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+A  + V +  +G   V+D+GRGIP  +H   GI   +V+MT LHAGGKF + +Y+VSG
Sbjct: 60  GFATKVEVRILENGGVQVTDDGRGIPVAMHS-TGIPTVDVVMTVLHAGGKFEEGAYQVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L+  I+ +G  +  ++   +    L   G     TGT + F   
Sbjct: 119 GLHGVGVSVVNALSTRLEADIRTDGYEWFQTYDRSVP-GTLKQ-GEKTKKTGTTIRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
            DIF    ++++T+  RL+E++FLN  + I L D+R                        
Sbjct: 177 PDIFETTSYDFETIARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVSDHAEAPKSAEEK 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y GG+  FV +++R K P+  S I   G  +   +++AM+WN G
Sbjct: 237 SAEAAKPQKVKHRVFHYPGGLVDFVKHINRTKTPIQPSVIDFDGKGEGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRTALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+  P+F  QTK KL ++EV+S V+   N+ LS W E +P EAK +V K + ++  
Sbjct: 357 VISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVNKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RLAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  LI NG +++ +PPLY +   +S  ++   +   +  L    
Sbjct: 536 DGQHISTLLLTLLFRFMKPLIENGHVFLAQPPLYKLKWQRSTPEFAYSDRERDGLLEAGR 595

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
            + +     D           +  +                       A          D
Sbjct: 596 AAGKRINADDGIQRYKGLGEMDAKELWETTMDPSVRVLRQITLDDAAAADELFSILMGED 655

Query: 628 QEINVSLASKLANRLNFI 645
            E   S  ++ A  + F+
Sbjct: 656 VEARRSFITRNAKDVRFL 673



 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G++ I+    +QRYKGLGEM+A +LWETT++P  R L ++ + DA+ AD+LF
Sbjct: 590 LLEAGRAAGKR-INADDGIQRYKGLGEMDAKELWETTMDPSVRVLRQITLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675


>gi|77408988|ref|ZP_00785709.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae COH1]
 gi|77172411|gb|EAO75559.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae COH1]
          Length = 642

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 262/641 (40%), Positives = 391/641 (60%), Gaps = 16/641 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y  D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ + I V 
Sbjct: 2   TNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVI 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS TV+D+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 61  INKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VNALSSWL++ I R+G IY   F N G     L   G+A    +GT V+F+P   +FS  
Sbjct: 120 VNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI 179

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           DF ++T+  RL+E +FL  +V ++L D RS E   +   Y+ G++ FV YL+  K+ L  
Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             +  +G      I++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T+ +  Y  
Sbjct: 240 -IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K+   K+  +++ G D REG +++LSI +P+   +F  QTK+KL S   R +V+  V++ 
Sbjct: 299 KTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEK 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           L+ +L E+   A  +++K + A   R+AAR+ARD     +K   D   L GKL     ++
Sbjct: 359 LTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   ++ ++EI T+I  +
Sbjct: 419 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++ + Y K+IIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPL
Sbjct: 479 GAGVG-PDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPL 537

Query: 542 YGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDAL 595
           Y +++GK  + + +    +   + L  +     +       G ++ + L       +   
Sbjct: 538 YKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRT 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            I   I+D      +  +             +  +  +L  
Sbjct: 598 LIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 638



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735
            + +F  +Y R                         +I       + L+ +     KG  
Sbjct: 512 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 571

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+V PRR++I++N
Sbjct: 572 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 631


>gi|145221416|ref|YP_001132094.1| DNA gyrase subunit B [Mycobacterium gilvum PYR-GCK]
 gi|145213902|gb|ABP43306.1| DNA gyrase subunit B [Mycobacterium gilvum PYR-GCK]
          Length = 675

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/678 (39%), Positives = 385/678 (56%), Gaps = 38/678 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+       S Y ADSI++L+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ 
Sbjct: 1   MAAQKKNAPSEYGADSIKVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+A  + V +  DG   V+D+GRGIP  +H   GI   +V+MT LHAGGKF + +Y+VSG
Sbjct: 60  GFATKVDVRILEDGGVQVTDDGRGIPVAMHS-TGIPTIDVVMTVLHAGGKFEEGAYQVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALSS L+  ++++G+ +  ++   +    L   G   + TGT + F   
Sbjct: 119 GLHGVGVSVVNALSSRLEADVRKDGHEWFQTYDRSVP-GTLRK-GDPTDKTGTTIRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
            +IF   +++++T+  RL+E++FLN  + I L D+R                        
Sbjct: 177 PEIFETTNYDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEAPKSAEEK 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y GG+  FV +++R K  +  S I   G  +   +++AM+WN G
Sbjct: 237 AAEASAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGEGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK ++ K + ++  
Sbjct: 357 VISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKTVINKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  L+ NG +++ +PPLY +   +   ++   +   +  L    
Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRTDPEFAYSDRERDGLLEAGR 595

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
            + +     D           +  +                       A          D
Sbjct: 596 AAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655

Query: 628 QEINVSLASKLANRLNFI 645
            E   S  ++ A  + F+
Sbjct: 656 VEARRSFITRNAKDVRFL 673



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G++ I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LLEAGRAAGKR-INVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675


>gi|206968830|ref|ZP_03229785.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH1134]
 gi|228922304|ref|ZP_04085611.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953865|ref|ZP_04115904.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071096|ref|ZP_04204322.1| DNA topoisomerase 4 subunit B [Bacillus cereus F65185]
 gi|229080802|ref|ZP_04213320.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-2]
 gi|229191682|ref|ZP_04318661.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 10876]
 gi|206735871|gb|EDZ53029.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH1134]
 gi|228591844|gb|EEK49684.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 10876]
 gi|228702536|gb|EEL55004.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-2]
 gi|228712036|gb|EEL63985.1| DNA topoisomerase 4 subunit B [Bacillus cereus F65185]
 gi|228805833|gb|EEM52413.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837359|gb|EEM82693.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 654

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+  R       +  +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|76786737|ref|YP_329857.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae A909]
 gi|76799494|ref|ZP_00781632.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 18RS21]
 gi|77412830|ref|ZP_00789035.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 515]
 gi|76561794|gb|ABA44378.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae A909]
 gi|76585155|gb|EAO61775.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 18RS21]
 gi|77161126|gb|EAO72232.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 515]
          Length = 642

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 263/641 (41%), Positives = 391/641 (60%), Gaps = 16/641 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y  D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ + I V 
Sbjct: 2   TNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVI 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS TV+D+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 61  INKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VNALSSWL++ I R+G IY   F N G     L   G+A    +GT V+F+P   +FS  
Sbjct: 120 VNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI 179

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           DF ++T+  RL+E +FL  +V ++L D RS E   +   Y+ G++ FV YL+  K+ L  
Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             +  +G      I++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T+ +  Y  
Sbjct: 240 -IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K+   K+  +++ G D REG +++LSI +P+   +F  QTK+KL S   R +V+  V++ 
Sbjct: 299 KTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEK 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           L+ +L E+   A  +++K + A   R+AAR+ARD     +K   D   L GKL     ++
Sbjct: 359 LTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   ++ ++EI T+I  +
Sbjct: 419 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+I+ + Y K+IIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPL
Sbjct: 479 GAGVG-PDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPL 537

Query: 542 YGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDAL 595
           Y +++GK  + + +    +   + L  +     +       G ++ + L       +   
Sbjct: 538 YKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRT 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            I   I+D      +  +             +  +  +L  
Sbjct: 598 LIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 638



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735
            + +F  +Y R                         +I       + L+ +     KG  
Sbjct: 512 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 571

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+V PRR++I++N
Sbjct: 572 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 631


>gi|21322770|dbj|BAB97399.1| DNA gyrase (topoisomerase II) B subunit [Corynebacterium glutamicum
           ATCC 13032]
          Length = 711

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 278/685 (40%), Positives = 393/685 (57%), Gaps = 49/685 (7%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
               +YDA SI IL+GL+AV+KRP MYIG T G  GLHH+I+EV+DN++DE++ G+A  +
Sbjct: 30  NTEHNYDASSITILEGLEAVRKRPGMYIGST-GPRGLHHLIWEVVDNSVDEAMAGHATKV 88

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DG   V D+GRGIP D+H   G    +V+MT+LHAGGKF+  SY VSGGLHGVG
Sbjct: 89  EVTLLEDGGVQVVDDGRGIPVDMHPS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 147

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS+ ++  IK  G  +  +F   + D  +   G     TGT + F P ++IF  
Sbjct: 148 ISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAEIFET 205

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE--------------------------- 217
            +F+++T+  RL+E++FLN  + I+L D R+ +                           
Sbjct: 206 TEFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEIDNET 265

Query: 218 ----------------PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                            ++    Y  G+E +V YL+R K  +  S +  +   D+  +++
Sbjct: 266 ELVEETTDAPKKPKKREKKKIFHYPNGLEDYVHYLNRSKTNIHPSIVSFEAKGDDHEVEV 325

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN  Y E+V  F N I  ++GGTH  G RSALT  +  Y  +    K+ + ++ GDD
Sbjct: 326 AMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANLTGDD 385

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
           CREG ++V+S+++ DP+F  QTK KL ++E++S V+   N+ +  WLE +P EAK+I+ K
Sbjct: 386 CREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKVIINK 445

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP+KSEL++VEGDSAGGSAK 
Sbjct: 446 AVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKS 505

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDINKLRYHKI+
Sbjct: 506 GRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDINKLRYHKIV 564

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLE 560
           +M DADVDG HI TLLLT  FR MP L+  G +Y+ +PPLY +   +    +   +E  +
Sbjct: 565 LMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSDEERD 624

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
           + L     +       D           N  +                D T  ++A    
Sbjct: 625 EQLNEGLAAGRKINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRADELF 684

Query: 621 VFNCESDQEINVSLASKLANRLNFI 645
                 D     S  ++ A  + F+
Sbjct: 685 SILMGDDVVARRSFITRNAKDVRFL 709



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/86 (56%), Positives = 60/86 (69%), Gaps = 6/86 (6%)

Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L+   + GRK I+    +QRYKGLGEMNAS+LWETT++P  R L RV ITDA +AD+LFS
Sbjct: 627 LNEGLAAGRK-INKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRADELFS 685

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMGD+V  RR FI  N+     LDI
Sbjct: 686 ILMGDDVVARRSFITRNAKDVRFLDI 711


>gi|163941204|ref|YP_001646088.1| DNA topoisomerase IV subunit B [Bacillus weihenstephanensis KBAB4]
 gi|163863401|gb|ABY44460.1| DNA topoisomerase IV, B subunit [Bacillus weihenstephanensis KBAB4]
          Length = 654

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 398/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+G+IYE  F N G     L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  S++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L            ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         L  +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELGGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631


>gi|291459211|ref|ZP_06598601.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418465|gb|EFE92184.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 642

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 256/600 (42%), Positives = 358/600 (59%), Gaps = 20/600 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+ADSI +L+GL+AV++RP MYIG   G  GL+H+IYE+LDN++DE L GY
Sbjct: 1   MAEK-----YNADSITVLEGLEAVRRRPGMYIGSV-GTKGLNHLIYEILDNSVDEHLAGY 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VTL+ DGSCTV DNGRGIP  +HK+ G+SA  V+MT LHAGGKFN  SYK+SGGL
Sbjct: 55  CTKIWVTLDSDGSCTVRDNGRGIPVGIHKK-GVSAERVVMTTLHAGGKFNASSYKISGGL 113

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTF 175
           HGVG SVVNALSS++++R+ ++G IYE  +  GI    L      V G    + GTE+ F
Sbjct: 114 HGVGSSVVNALSSYMRIRVFQDGKIYEDEYSRGIPTKELSDGMPPVIGKT-REKGTEIRF 172

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +P  +IF    F  + L  RL E ++LN  + I   D+R  E          G+ AFV  
Sbjct: 173 IPDPEIFEKTQFRAEWLMSRLHETAYLNPELSIHYCDRRGEEEILADYHEPEGLRAFVRD 232

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR     +   I  +G  +N  ++  +++ D + EN+L F N+I  ++GGTH+ G ++ 
Sbjct: 233 LDRDCGEAVSPEIYFRGRAENTELECCIQFTDSFEENILGFCNDIYTQEGGTHIVGFKTK 292

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
            T+ I  Y  +    K+   +  G D R G T+V+++K P+P F  QTK KL S +    
Sbjct: 293 FTQLINGYARELGLLKEKDPNFTGADTRNGMTAVIALKYPEPIFEGQTKTKLASLDAAKH 352

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V +   + LS + + +    K I+     ++ +R    +A+     K      S  GKLA
Sbjct: 353 VAAIAGEELSHYFDRNIEVVKAIIGCAEKSARIRRQEEKAKTNLLSKSKYSFDS-NGKLA 411

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           +C  R+P+  E+F+VEGDSAGGSAK  R R  QAILPLRGKILNVE+A  DK+L++ EI 
Sbjct: 412 NCISREPENCEIFIVEGDSAGGSAKSSRDRNTQAILPLRGKILNVEKASIDKVLANAEIK 471

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           T+I A G G  +   + FDI+KLRYHKII+MTDADVDG+HI TLLLTFF+R MP LI  G
Sbjct: 472 TMINAFGCGFSEGYGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFFYRFMPDLIREG 531

Query: 533 FLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +Y+  PPLY  T   + +  +Y+ D+++L  Y                 G +  ++L  
Sbjct: 532 HVYVSMPPLYLATPSAKKEKAEYLYDDKALLRYREKHREGSYEIKRFKGLGEMDPSELWE 591



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 54/94 (57%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  +    +LL            ++R+KGLGEM+ S+LWETTLNP+ R L RV+I 
Sbjct: 548 KKEKAEYLYDDKALLRYREKHREGSYEIKRFKGLGEMDPSELWETTLNPENRVLKRVEIE 607

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           DA  A ++   LMG EV PRREFI E++  + +D
Sbjct: 608 DARLASEVTGMLMGTEVGPRREFIYEHAREATID 641


>gi|295398131|ref|ZP_06808180.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans
           ATCC 11563]
 gi|294973650|gb|EFG49428.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans
           ATCC 11563]
          Length = 689

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 281/639 (43%), Positives = 405/639 (63%), Gaps = 11/639 (1%)

Query: 1   MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+   +    YDA  IQ+L+GL+AV+KRP MYIG T   SGLHH+++E++DN+IDE+L G
Sbjct: 50  MAKKRELAKDYDASQIQVLEGLEAVRKRPGMYIGSTSA-SGLHHLVWEIVDNSIDEALAG 108

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +A  I VT+  D S TV D+GRGIP D+    G  A E + T LHAGGKF    YKVSGG
Sbjct: 109 FAGHIQVTIEKDNSITVVDDGRGIPVDIQSNTGRPAVETVFTVLHAGGKFGGGGYKVSGG 168

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS WL + + + G IY   F  G + + +  TG   +  GT V F P +
Sbjct: 169 LHGVGASVVNALSEWLHVYVHKNGRIYHQEFRQGAIVSDVEQTGDT-DTHGTVVHFKPDA 227

Query: 180 DIFSVQDFNYDTLQH-RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+        + + R+REL+FLN  ++ISL+D RS   +  +  Y+GGI+ ++ Y+++
Sbjct: 228 EIFTETTTFEFEVLNRRVRELAFLNKGLRISLMDARSENHKTASYHYEGGIKEYIEYMNK 287

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  L + PI ++  +D I +++A+++ DG+H N+L F NNI   +GG H SG ++ALTR
Sbjct: 288 DKDVLFEQPIYLEDEQDGIEVEVALQYTDGFHSNILSFANNIHTFEGGMHESGAKTALTR 347

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y       K+++ ++ G+D REG T ++SI+ PDP+F  QTK KL +SEVR++ ++
Sbjct: 348 VINNYARSQKLIKENEDNLTGEDVREGITLIVSIRHPDPQFEGQTKMKLGNSEVRTITDN 407

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
                   +L E+P  A+ IV K   AS  R AA+RAR++TR+K  L+I++LPGKLADCS
Sbjct: 408 LFATHFETFLLENPQIARRIVDKGTVASKARLAAKRAREMTRKKSGLEISNLPGKLADCS 467

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P++SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D++LS++EI +L 
Sbjct: 468 SRNPEESELFIVEGNSAGGSAKQGRSRHFQAILPIRGKILNVEKASMDRILSNEEIRSLF 527

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+GTG  Q+ FDI K RYHK++IMTDADVDGAHIR LLLT  +R M  ++  G++YI  
Sbjct: 528 TAMGTGW-QNDFDITKARYHKLVIMTDADVDGAHIRALLLTLIYRYMRPILDAGYVYIAV 586

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKI 597
           PPLY + +GK + Y+  ++ LE+YL     + +         G +    L         +
Sbjct: 587 PPLYQVRQGKKIVYLDTDKQLEEYLQTIPATPKPAIQRYKGLGEMDAEQLWET-----TM 641

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           D   +     +    +E   I  +   +  +     +  
Sbjct: 642 DPANRTLLQVNVDDAVEADKIINMLMGDHVEPRRDFIEE 680



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 111/293 (37%), Gaps = 8/293 (2%)

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           +RT+    F              I +  +   T     +             +      +
Sbjct: 401 VRTITDNLFATHF-ETFLLENPQIARRIVDKGTVASKARLAAKRAREMTRKKSGLEISNL 459

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                     +  +   FI +        K     H +  +   +   + N E      +
Sbjct: 460 PGKLADCSSRNPEESELFIVEGNSAGGSAKQGRSRHFQAIL--PIRGKILNVEKASMDRI 517

Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR- 691
               ++ +    +    +  +  +      LV      V    +   + + +   +Y R 
Sbjct: 518 LSNEEIRSLFTAMGTGWQNDFDITKARYHKLVIMTDADVDGAHI--RALLLTLIYRYMRP 575

Query: 692 IFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQ 749
           I         +  L  +  G KI  +     L + + +I      ++QRYKGLGEM+A Q
Sbjct: 576 ILDAGYVYIAVPPLYQVRQGKKIVYLDTDKQLEEYLQTIPATPKPAIQRYKGLGEMDAEQ 635

Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           LWETT++P  R+LL+V + DA +AD + + LMGD VEPRR+FI+EN+  + +D
Sbjct: 636 LWETTMDPANRTLLQVNVDDAVEADKIINMLMGDHVEPRRDFIEENATYANID 688


>gi|229151792|ref|ZP_04279991.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1550]
 gi|228631605|gb|EEK88235.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1550]
          Length = 654

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+  R       +  +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|304384956|ref|ZP_07367302.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pediococcus acidilactici
           DSM 20284]
 gi|304329150|gb|EFL96370.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pediococcus acidilactici
           DSM 20284]
          Length = 681

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 263/601 (43%), Positives = 369/601 (61%), Gaps = 14/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I  ++YD  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MA-KIGKTTYDDSSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+  D S TV D+GRG+P  +H + G   AEVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GKEINVTIRSDNSITVVDHGRGMPVGMH-KSGKPTAEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS  L + I R+   YE +F+N G     L   G      GT VTF P  
Sbjct: 118 HGVGASVVNALSEKLTVEIVRDKMKYEENFVNGGHPVGTLKKVGKTKESNGTTVTFKPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF+   FN++TL  RLRE +FL   V+I+L D+R+   +     Y+ GI+ FV YL+  
Sbjct: 178 TIFTTTVFNFNTLAVRLRESAFLLKGVKITLTDERAGHEQAEEYLYEEGIKEFVEYLNED 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  + + +   GS+  I +++A ++NDGY E VL F NN+  KDGGTH  G+RS  T+ 
Sbjct: 238 -KDTLGNIMYFDGSKHGIEVEIAGQYNDGYSETVLSFVNNVRTKDGGTHEVGMRSGWTKA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              +  K    K+  +++ G D REG ++V+SI++P+    F  QTKEKL + E R +VE
Sbjct: 297 FNEFARKVGLLKEKDKNLEGSDVREGLSAVISIRVPEELLEFEGQTKEKLGTPEARPIVE 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L  +L E+   A+ +V+K ++A   R AAR+ARD   T ++       L GKL 
Sbjct: 357 AVVSEQLGFFLMENGEFAQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ KK+ELFLVEGDSAGGSAKQGR+R+ QAILPLRGK+LN E+A+   ++ ++EI 
Sbjct: 417 PAQSKNAKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F +    Y K+IIMTDAD DGAHI+TLLLTFF++ M  +I  G +Y
Sbjct: 477 TIIYTIGAGVG-PEFKVEDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIY 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY +     +   ++Y   +E LE+          ++ F     + +       +
Sbjct: 536 IALPPLYKLQKGANKKTKIEYAWTDEELEEVSKKMGRGFSLQRFKGLGEMNADQLWETTM 595

Query: 592 D 592
           +
Sbjct: 596 N 596



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 3/262 (1%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +  +      +  +    +   E     +   ++  L        SKN  +N +     
Sbjct: 374 AQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKLTPAQSKNAKKNELFLVEG 433

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
                      + K      +   V N E  +  ++    ++   +  I       +   
Sbjct: 434 DSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTIIYTIGAGVGPEFKVE 493

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK 715
            +N D ++           +      F +      I + +I      +  L      K K
Sbjct: 494 DSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIYIALPPLYKLQKGANKKTK 553

Query: 716 ITG--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I        L+ +     +G S+QR+KGLGEMNA QLWETT+NPDTR+L+RV+I D + A
Sbjct: 554 IEYAWTDEELEEVSKKMGRGFSLQRFKGLGEMNADQLWETTMNPDTRTLVRVRIDDDTLA 613

Query: 774 DDLFSRLMGDEVEPRREFIQEN 795
           +   + LMGD+VEPRR++I+ N
Sbjct: 614 ERRVTTLMGDKVEPRRKWIESN 635


>gi|289167707|ref|YP_003445976.1| DNA gyrase, B subunit [Streptococcus mitis B6]
 gi|288907274|emb|CBJ22109.1| DNA gyrase, B subunit [Streptococcus mitis B6]
          Length = 648

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIEVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIS 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRAKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L    S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRAKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|253576486|ref|ZP_04853815.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844123|gb|EES72142.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 661

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 269/612 (43%), Positives = 384/612 (62%), Gaps = 23/612 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S YDAD IQ+L+GL AV+KRP MYIG T   SGLHH+++E++DNA+DE L  Y   I +
Sbjct: 20  SSGYDADDIQVLEGLVAVRKRPGMYIGSTSS-SGLHHLVWEIVDNAVDEHLAKYCTKIDI 78

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TLN DGS TV DNGRGIPT +H + GI   +V+ T LHAGGKF    YK SGGLHGVG S
Sbjct: 79  TLNKDGSVTVLDNGRGIPTGMH-KTGIPTPQVVYTILHAGGKFGGAGYKKSGGLHGVGAS 137

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGTEVTFL 176
           V NALS WL++ I R+G I+ M F            G     L + G+  N TGT+VTF 
Sbjct: 138 VTNALSEWLEVEIYRDGKIHRMRFEYWVDEKGIEHVGEPVTGLEIIGNT-NKTGTKVTFK 196

Query: 177 PSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           P   +FS     NYDTL  RL+E++FLNS ++++L D+R+   R    FY+GG   FV +
Sbjct: 197 PDIRVFSGGIGLNYDTLAERLQEIAFLNSGLKVTLKDERAG--RSDEFFYEGGASQFVEF 254

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+  K  L    I     RD+I +++A+++N GY E ++ F N+IP + GGTH +G ++A
Sbjct: 255 LNDGKDVLH-DVIHFYAERDDIEVEVALQYNAGYTETLVSFVNSIPTRGGGTHETGFKTA 313

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
            TR +  Y  K+   K+  +++ G+D REG  +V+S+KM +  F  QTK++L S+  RS 
Sbjct: 314 YTRVMNEYARKNGMLKEKDKNLEGNDLREGMMAVISVKMSEVEFVGQTKDQLGSASARSA 373

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKL 414
           VES V + ++ +LEE+P  A+ ++KK + AS  R+AAR+ARD  R  K   + ++L GKL
Sbjct: 374 VESVVGEKMAVFLEENPQVAQTLIKKAIQASKAREAARKARDEMRSGKKRSESSNLGGKL 433

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                +D  ++ELF+VEGDSAGGSAKQGR  + QAILPL+GK +N E+A+   +L + E 
Sbjct: 434 TPAQSKDYTRTELFIVEGDSAGGSAKQGRDSKLQAILPLKGKPMNPEKAKLADILKNDEY 493

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             +I+A+G GIG   F +    + KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +
Sbjct: 494 RAIISAIGAGIG-PEFALEDSNFSKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIDAGRV 552

Query: 535 YIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           YI +PPLY ITR     ++++Y   +E L++YL     + E++ +     +  +      
Sbjct: 553 YIAQPPLYKITRRSGKLETVRYAWTDEQLQNYLKEFGKNFELQRYKGLGEMNPEQLWETT 612

Query: 591 IDDALKIDKLIK 602
           ++   +    ++
Sbjct: 613 MNPETRTMLQVQ 624



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 109/293 (37%), Gaps = 6/293 (2%)

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D  G+      +     +  ++       + +  +    +    +     ++ ++    +
Sbjct: 363 DQLGSASARSAVESVVGEKMAVFLEENPQVAQTLIKKAIQASKAREA-ARKARDEMRSGK 421

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
             SE   L        SK+  R  +                  K      +     N E 
Sbjct: 422 KRSESSNLGGKLTPAQSKDYTRTELFIVEGDSAGGSAKQGRDSKLQAILPLKGKPMNPEK 481

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
            +  ++    +    ++ I       +    +N   ++           +      F + 
Sbjct: 482 AKLADILKNDEYRAIISAIGAGIGPEFALEDSNFSKIIIMTDADTDGAHIQVLLLTFFYR 541

Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISMQRYKGL 742
                I + R+      +  +     K++          L + +   G K   +QRYKGL
Sbjct: 542 YMKPLIDAGRVYIAQPPLYKITRRSGKLETVRYAWTDEQLQNYLKEFG-KNFELQRYKGL 600

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GEMN  QLWETT+NP+TR++L+V+I DA++A+   S LMGD+V+PR+ +I EN
Sbjct: 601 GEMNPEQLWETTMNPETRTMLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVEN 653


>gi|324999887|ref|ZP_08120999.1| DNA gyrase, B subunit [Pseudonocardia sp. P1]
          Length = 700

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 261/587 (44%), Positives = 366/587 (62%), Gaps = 43/587 (7%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D    ++Y A SI +LKGL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ G+A 
Sbjct: 16  DKAAKNAYGASSITVLKGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGHAT 74

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + VTL  DG   V D+GRGIP ++H  E     EV++T LHAGGKF+ KSY VSGGLHG
Sbjct: 75  KVVVTLQPDGGVRVEDDGRGIPVEMHPVEKKPTLEVVLTSLHAGGKFDDKSYAVSGGLHG 134

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDI 181
           VGVSVVNALS+ L++ ++ +G I++  + +      LV  G+    DTGT +T+     I
Sbjct: 135 VGVSVVNALSTALEVEVRVDGKIWKQRYDHAKP-GELVEAGTTKKSDTGTTITYWADPTI 193

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDK---------------------------- 213
           F    +  +T++ RL+E +FLN  + + L D+                            
Sbjct: 194 FETTSYTLETIRRRLQEQTFLNKGLTMVLRDERRPETPATGVPSSDAVDEDGNPVEAAPV 253

Query: 214 -----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         +P+E    Y  G+E FV++L++ K P+ +  +   G      +++A
Sbjct: 254 VDVDEEPDAEGYVAKPKEYVFHYPNGLEDFVAHLNKSKDPIHRKIVAYTGEGPGHQVEVA 313

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R ALT  +  Y       K+   ++ GDD 
Sbjct: 314 MQWNSGYSESVYTFANTINTHEGGTHEEGFRHALTATVNRYARDKKLIKEKDPALSGDDI 373

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK IV K 
Sbjct: 374 REGLAAIVSVKISEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPNEAKTIVNKA 433

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AARRAR+L RRK   DI  LPGKL+DC  RDP+  EL++VEGDSAGGSAK G
Sbjct: 434 VSSAQARLAARRARELVRRKSAGDIGGLPGKLSDCRSRDPESCELYIVEGDSAGGSAKAG 493

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R   +QAILP+RGKI+NVE+AR D++L + E+ ++ITA+GTGI  D FD++KLRYHK+++
Sbjct: 494 RDSMHQAILPIRGKIINVEKARIDRVLKNTEVQSIITAMGTGI-HDDFDLSKLRYHKLVL 552

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549
           M DADVDG HIRTLLLT  FR M  LI NG +++ +PPLY +  G  
Sbjct: 553 MADADVDGQHIRTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWGGR 599



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 4/86 (4%)

Query: 722 LLDTIFSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L++   + G+K      +QRYKGLGEM+A +LWETT++P  R LL+V + DA+ AD+LFS
Sbjct: 615 LIEAGRAAGKKLPKDQGVQRYKGLGEMDAKELWETTMDPTNRLLLQVSLDDAATADELFS 674

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMG++VE RR FI  N+     LD+
Sbjct: 675 VLMGEDVESRRSFITRNAKDVRFLDV 700


>gi|229061161|ref|ZP_04198511.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH603]
 gi|228718032|gb|EEL69672.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH603]
          Length = 653

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 265/655 (40%), Positives = 396/655 (60%), Gaps = 18/655 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+ D I+V +
Sbjct: 6   QYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGFGDEISVVI 64

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGLHGVG SVV
Sbjct: 65  HKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 123

Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           NALS WL + IKR+G+IYE  F N G     L   G    ++GT + F P + IFS  ++
Sbjct: 124 NALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTK-ESGTTMHFKPDTTIFSTTNY 182

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  K  +    
Sbjct: 183 NYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHP-V 239

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR    Y  K 
Sbjct: 240 VYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKV 299

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              K+  +++ G D REG  S++S+++P+   +F  QTK KL +SE RS +++ V++ L+
Sbjct: 300 SLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSIDAIVSEHLA 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPK 423
            +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL     R+P+
Sbjct: 360 YFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQ 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI T+I A+G 
Sbjct: 420 KNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGG 479

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++I  PPLY 
Sbjct: 480 GVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYK 538

Query: 544 IT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK--I 597
           ++    + + ++Y   +E L            ++ +     + +       ++   +  I
Sbjct: 539 VSKGKGKSEVIEYAWSDEELGSVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLI 598

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
              I D      +                ++ +   +  +     N +  ++E  
Sbjct: 599 RVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMETEVE 653



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 453 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         L ++     KG  +Q
Sbjct: 513 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELGSVTKKVGKGYMLQ 572

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+   + LMGD+VEPRR++I+ N
Sbjct: 573 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 630


>gi|229179883|ref|ZP_04307229.1| DNA topoisomerase 4 subunit B [Bacillus cereus 172560W]
 gi|228603564|gb|EEK61039.1| DNA topoisomerase 4 subunit B [Bacillus cereus 172560W]
          Length = 654

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+  R       +  +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEIIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K +I         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEIIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|229012772|ref|ZP_04169941.1| DNA topoisomerase 4 subunit B [Bacillus mycoides DSM 2048]
 gi|228748453|gb|EEL98309.1| DNA topoisomerase 4 subunit B [Bacillus mycoides DSM 2048]
          Length = 654

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 262/601 (43%), Positives = 384/601 (63%), Gaps = 18/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+G+IYE  F N G     L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  S++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+   T +K      +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L D          ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 D 592
           +
Sbjct: 592 N 592



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSLLDTIFSIGRKGISM 736
             F +      I + ++      +  +     K ++         L D    +G KG  +
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVG-KGYML 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QRYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+   + LMGD+VEPRR++I+ N
Sbjct: 573 QRYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631


>gi|315441702|ref|YP_004074581.1| DNA gyrase subunit B [Mycobacterium sp. Spyr1]
 gi|315260005|gb|ADT96746.1| DNA gyrase subunit B [Mycobacterium sp. Spyr1]
          Length = 675

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/678 (39%), Positives = 385/678 (56%), Gaps = 38/678 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+       S Y ADSI++L+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ 
Sbjct: 1   MAAQKKNAPSEYGADSIKVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+A  + V +  DG   V+D+GRGIP  +H   GI   +V+MT LHAGGKF + +Y+VSG
Sbjct: 60  GFATKVDVRILEDGGVQVTDDGRGIPVSMHS-TGIPTIDVVMTVLHAGGKFEEGAYQVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALSS L+  ++++G+ +  ++   +    L   G   + TGT + F   
Sbjct: 119 GLHGVGVSVVNALSSRLEADVRKDGHEWFQTYDRSVP-GTLRK-GDPTDKTGTTIRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214
            +IF   +++++T+  RL+E++FLN  + I L D+R                        
Sbjct: 177 PEIFETTNYDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEAPKSAEEK 236

Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y GG+  FV +++R K  +  S I   G  +   +++AM+WN G
Sbjct: 237 AAEASAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGEGHEVEIAMQWNAG 296

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +
Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDDIREGLAA 356

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK ++ K + ++  
Sbjct: 357 VISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKTVINKAVSSAQA 416

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    Q
Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKSGRDSMFQ 476

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI++M DADV
Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIVLMADADV 535

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  L+ NG +++ +PPLY +   +   ++   +   +  L    
Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRTDPEFAYSDRERDGLLEAGR 595

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
            + +     D           +  +                       A          D
Sbjct: 596 AAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655

Query: 628 QEINVSLASKLANRLNFI 645
            E   S  ++ A  + F+
Sbjct: 656 VEARRSFITRNAKDVRFL 673



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G++ I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 590 LLEAGRAAGKR-INVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675


>gi|313680912|ref|YP_004058651.1| DNA gyrase subunit b [Oceanithermus profundus DSM 14977]
 gi|313153627|gb|ADR37478.1| DNA gyrase subunit B [Oceanithermus profundus DSM 14977]
          Length = 637

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 281/636 (44%), Positives = 385/636 (60%), Gaps = 10/636 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S YDA SI++LKGL+ V+KRP+MYI  T G  G H ++ E+LDN++DE+L GYAD I VT
Sbjct: 2   SKYDASSIKVLKGLEGVRKRPAMYIAGT-GTDGYHQLLTEILDNSVDEALAGYADTIKVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V DNGRGIP D+   EG  A EVI T LHAGGKF + +YKVSGGLHGVG SV
Sbjct: 61  LHKDGSASVEDNGRGIPVDVMAGEGKPAVEVIYTELHAGGKFEEGAYKVSGGLHGVGASV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSV-Q 185
           VNAL+ W+ + + R G  Y + F  G +  PL V G A    TGT V F+P + IF    
Sbjct: 121 VNALTDWMVVEVWRGGKHYRIEFARGEVKKPLEVVGKAPKGKTGTRVHFMPDATIFEEGL 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y  ++ R+RE+S+L   ++I L D+RS +  +     KGG+ +F   L   +  L  
Sbjct: 181 EFDYRRVRRRVREVSYLAGGLRIELADERSGK--QEVFHDKGGVASFAKALAEGEDLLYD 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P R+ G  D++ +D+      GY   +L + N IP +DGG HLSG R A TR +  Y +
Sbjct: 239 KPGRLSGQVDDVEVDVGFIHTKGYTTQLLSYANMIPTRDGGVHLSGFRGAYTRAMNQYAK 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K  +    GDD  EG  +V+S+K+P P+F  QTK KL++ E    V S V + L 
Sbjct: 299 KAGLQKNGQPKPSGDDLLEGLFAVISVKIPQPQFEGQTKGKLLNPEAERAVSSVVYEKLM 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +LE +P  AK I  K   A+  R+AAR+AR+L RR+  L+   LPGKLADC   +P ++
Sbjct: 359 DFLESNPRIAKTIYDKAQRAAQAREAARKARELVRRQNPLESDDLPGKLADCQTEEPDEA 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K L + E+  +I A+G GI
Sbjct: 419 ELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANLQKALKNNEVRAMIAAIGAGI 478

Query: 486 ----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
                +  FD++ +RYHKII+MTDADVDG+HIRTLLLTFF+R M  +I  G+LYI +PPL
Sbjct: 479 QGTGDEAHFDVDSVRYHKIILMTDADVDGSHIRTLLLTFFYRFMRPIIDRGYLYIAQPPL 538

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN-FIDDALKIDKL 600
           Y +  G+  +Y+ D+E+L+  L      +         G ++   L    ++   ++ K 
Sbjct: 539 YKLKVGRRSEYIFDDEALKAALKKVGDKKYEIQRFKGLGEMNPEQLWETTMNPETRVLKQ 598

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           +      +     E  + + V       E N   A 
Sbjct: 599 VTIEDALYASEIFEDLMGADVQPRREFIEENAKFAE 634



 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 72/155 (46%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
            E  +         ++      V    +      F +      I    +      +  L 
Sbjct: 483 DEAHFDVDSVRYHKIILMTDADVDGSHIRTLLLTFFYRFMRPIIDRGYLYIAQPPLYKLK 542

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                  I    +L   +  +G K   +QR+KGLGEMN  QLWETT+NP+TR L +V I 
Sbjct: 543 VGRRSEYIFDDEALKAALKKVGDKKYEIQRFKGLGEMNPEQLWETTMNPETRVLKQVTIE 602

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           DA  A ++F  LMG +V+PRREFI+EN+  + LD+
Sbjct: 603 DALYASEIFEDLMGADVQPRREFIEENAKFAELDV 637


>gi|299536168|ref|ZP_07049482.1| DNA topoisomerase IV subunit B [Lysinibacillus fusiformis ZC1]
 gi|298728443|gb|EFI69004.1| DNA topoisomerase IV subunit B [Lysinibacillus fusiformis ZC1]
          Length = 658

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/662 (40%), Positives = 384/662 (58%), Gaps = 17/662 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    S Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+
Sbjct: 1   MTNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D GRG+PT +H + G    E+I T LHAGGKF Q  YK SGGL
Sbjct: 60  GSHIIVTIHKDQSMSVRDFGRGMPTGMH-KMGKPTPEIIFTVLHAGGKFGQGGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS++L++ I R+G  Y   F + G     L   G     TGT V FLP  
Sbjct: 119 HGVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGQPVTTLENIGQTK-QTGTLVHFLPDE 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFSV  FNYDTL  RLRE +FL   ++I LID+R  E +    FY+ GIEAFV+YL+  
Sbjct: 178 TIFSVTKFNYDTLAERLRESAFLLKGLKIELIDER-EEGKSDVFFYENGIEAFVAYLNEE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L      ++G +D I ++ A ++NDGY E +L F NN+  +DGGTH +G ++ALTR 
Sbjct: 237 KDVLHP-VKYVEGVQDEIEVEFAFQYNDGYSETILSFVNNVRTRDGGTHETGAKAALTRV 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357
              Y  K    K   +++ G D REG  +++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 296 FNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V++ +   LEE+   +  +V+K + A  VR+AAR+AR+     +K       L GKL 
Sbjct: 356 SVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLT 415

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+  K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   ++ ++EI 
Sbjct: 416 PAQSRNAAKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEIS 475

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G   F +    Y K++IMTDAD DGAHI+ LLLTFF+R M  LI +G +Y
Sbjct: 476 TIIHAIGAGVG-TDFAVEDSAYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIESGKVY 534

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY +++G   + +       +Y   +S  ++         ++ +      ++   
Sbjct: 535 IALPPLYKVSKGTGKKEII------EYAWTESDLQKAIKKVGKGYILQRYKGLGEMNADQ 588

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
             D  +        +  IE    +         +        +   ++F  E        
Sbjct: 589 LWDTTMNPETRTLIRVTIEDGARAERRVTTLMGDKVEPRRKWIEANVDFGMEDDSNILEN 648

Query: 656 SI 657
             
Sbjct: 649 EF 650



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 107/260 (41%), Gaps = 11/260 (4%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              R + ++    +   +     ++      L        S+N      ++   ++    
Sbjct: 379 KAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLTPAQSRN---AAKNELYLVEGDSA 435

Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                  +    QA++     V N E  +  ++    +++  ++ I       +    + 
Sbjct: 436 GGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEISTIIHAIGAGVGTDFAVEDSA 495

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI--- 716
            D +V           +      F +      I S ++      +  +     K +I   
Sbjct: 496 YDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIESGKVYIALPPLYKVSKGTGKKEIIEY 555

Query: 717 -TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                 L   I  +G KG  +QRYKGLGEMNA QLW+TT+NP+TR+L+RV I D ++A+ 
Sbjct: 556 AWTESDLQKAIKKVG-KGYILQRYKGLGEMNADQLWDTTMNPETRTLIRVTIEDGARAER 614

Query: 776 LFSRLMGDEVEPRREFIQEN 795
             + LMGD+VEPRR++I+ N
Sbjct: 615 RVTTLMGDKVEPRRKWIEAN 634


>gi|303229212|ref|ZP_07316011.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302516122|gb|EFL58065.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 633

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 308/585 (52%), Positives = 415/585 (70%), Gaps = 4/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A +IQ+L+GLDAV+KRP MYIG T    GLHH++YEV+DN++DE+L GYA  I
Sbjct: 1   MAEENYGAQNIQVLEGLDAVRKRPGMYIGSTS-IRGLHHLVYEVVDNSVDEALAGYATHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF    YKVSGGLHGVG
Sbjct: 60  EVSINEDNSITVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS W K+++ + G I E+ F  G   + L   G A   TGT V F P S+IF  
Sbjct: 119 ISVVNALSEWTKVQVSQNGIIQEIDFARGHKTSELHEIGKAE-GTGTTVIFKPDSEIFET 177

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             FN+DTL+ RL+EL+FLN  ++I+L D R  EPR  +  Y+GG+ +F+++L+ +K+ + 
Sbjct: 178 TVFNFDTLKIRLQELAFLNKGLRITLSDLRQEEPRIESFHYEGGLSSFITFLNENKEVVN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            + I I+ ++D++ +D+A+++ND Y EN+L F NNI   DGGTHLSG R+ALTR +  Y 
Sbjct: 238 PTVIDIENTKDDVVVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAALTRTLNDYG 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            KS   K+++ ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEV+ + +  V++GL
Sbjct: 298 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSEGL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + EEHP +AK I++K   AS  R+AAR+ARDLTRRK  L+++SLPGKLADCSE+D   
Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG
Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY I
Sbjct: 478 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +GKS  YV  +  L   L                G ++   L  
Sbjct: 537 KKGKSHWYVYSDAELTAKLDEVGRDGITIQRYKGLGEMNPEQLWE 581



 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 6/203 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +        +   + N E  +   +   +++ + +          +  + +  +
Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 490

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720
            ++      V    +      F +      +    I       L  I  G     +    
Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 549

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            L   +  +GR GI++QRYKGLGEMN  QLWETT+NP+ R++L+V + D+ +AD +F+ L
Sbjct: 550 ELTAKLDEVGRDGITIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVL 609

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGD+VEPRR+FI++N+     LD
Sbjct: 610 MGDKVEPRRKFIEDNAKYVRNLD 632


>gi|229917451|ref|YP_002886097.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b]
 gi|229468880|gb|ACQ70652.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b]
          Length = 642

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 297/648 (45%), Positives = 421/648 (64%), Gaps = 12/648 (1%)

Query: 1   MSDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS+  +    +Y AD IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L 
Sbjct: 1   MSNENEKELQAYGADQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D ITVT+    S  V DNGRGIP D+ K+ G  A EVI T LHAGGKF    YKVSG
Sbjct: 60  GYCDTITVTVEPGNSIVVEDNGRGIPVDVQKKTGRPAVEVIFTVLHAGGKFGGGGYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG SVVNALS+ L++ ++R+GN+Y  SF  G+    L +     + TGT V F P 
Sbjct: 120 GLHGVGASVVNALSTKLEVFVRRDGNVYYQSFKRGVPQGELEIV-GTTDTTGTTVRFFPD 178

Query: 179 SDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            DIF    ++++D L  RLREL+FLN  ++I   D R+ E  E    Y+GGI+++V +L+
Sbjct: 179 GDIFQETLEYDFDLLATRLRELAFLNKGLRIVAKDDRNDETIERNYHYEGGIKSYVEHLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R K  + + P+ + G++D I +++A+++N+G+  N+  FTNNIP  +GGTH +G ++ALT
Sbjct: 239 RSKASIHEEPVYVHGTKDGIEVEIALQYNEGFASNIYSFTNNIPTHEGGTHETGFKTALT 298

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y ++    K+   S+ GDD REG T+++S+K P P+F  QTK KL +++ R+  +
Sbjct: 299 RSINDYAKRFGLMKEADGSLSGDDVREGLTAIVSVKHPAPQFEGQTKTKLGNADARTATD 358

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           +  +D    +L E+P   ++IV K L A+  R AA+RAR++TRRKG+L+++SLPGKLADC
Sbjct: 359 TLFSDTFEQFLLENPSVGRLIVDKGLMAARARLAAKRAREMTRRKGILEVSSLPGKLADC 418

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  KSEL++VEGDSAGGSAK GR R  QAILP+RGKI+NVE+AR DK+L++QE+ T+
Sbjct: 419 SSKDASKSELYIVEGDSAGGSAKSGRDRHFQAILPIRGKIINVEKARLDKILANQEVRTI 478

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGI  D FD++K RYHK+IIMTDADVDGAHIRTLLLTFF+R M  L+ +G++YI 
Sbjct: 479 ITALGTGI-ADEFDLSKARYHKLIIMTDADVDGAHIRTLLLTFFYRYMRPLVESGYVYIA 537

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALK 596
           +PPLYG+  GK   YV+++  L+  +     +           G +    L N       
Sbjct: 538 QPPLYGVKHGKETIYVQNDRELQAAIAQLPENARYSVQRYKGLGEMDPEQLWNT-----T 592

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           ++   +       +  IE   I      ++ +     + S      N 
Sbjct: 593 MNPETRSMLRVDLQDAIEADEIFETLMGDNVEPRRDFIQSHAHYVKNL 640



 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 99/239 (41%), Gaps = 17/239 (7%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
               +    S+  I + D       + +                +E+A +  +   +  +
Sbjct: 417 DCSSKDASKSELYIVEGDSAGGSAKSGRDRHFQAILPIRGKIINVEKARLDKILANQEVR 476

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
            I  +L + +A+  +    +  K           L+      V    +      F +   
Sbjct: 477 TIITALGTGIADEFDLSKARYHK-----------LIIMTDADVDGAHIRTLLLTFFYRYM 525

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSL---LDTIFSIGRKGISMQRYKGLGEM 745
              + S  +      +  +    + I +     L   +  +    R   S+QRYKGLGEM
Sbjct: 526 RPLVESGYVYIAQPPLYGVKHGKETIYVQNDRELQAAIAQLPENAR--YSVQRYKGLGEM 583

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +  QLW TT+NP+TRS+LRV + DA +AD++F  LMGD VEPRR+FIQ ++     LDI
Sbjct: 584 DPEQLWNTTMNPETRSMLRVDLQDAIEADEIFETLMGDNVEPRRDFIQSHAHYVKNLDI 642


>gi|168490903|ref|ZP_02715046.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC0288-04]
 gi|169833521|ref|YP_001694269.1| DNA gyrase subunit B [Streptococcus pneumoniae Hungary19A-6]
 gi|182683725|ref|YP_001835472.1| DNA gyrase subunit B [Streptococcus pneumoniae CGSP14]
 gi|221231606|ref|YP_002510758.1| DNA gyrase subunit B [Streptococcus pneumoniae ATCC 700669]
 gi|225854322|ref|YP_002735834.1| DNA gyrase subunit B [Streptococcus pneumoniae JJA]
 gi|225858616|ref|YP_002740126.1| DNA gyrase subunit B [Streptococcus pneumoniae 70585]
 gi|303255780|ref|ZP_07341821.1| DNA gyrase subunit B [Streptococcus pneumoniae BS455]
 gi|303260274|ref|ZP_07346245.1| DNA gyrase subunit B [Streptococcus pneumoniae SP-BS293]
 gi|303261480|ref|ZP_07347428.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS292]
 gi|303264148|ref|ZP_07350069.1| DNA gyrase subunit B [Streptococcus pneumoniae BS397]
 gi|303266242|ref|ZP_07352133.1| DNA gyrase subunit B [Streptococcus pneumoniae BS457]
 gi|303268680|ref|ZP_07354470.1| DNA gyrase subunit B [Streptococcus pneumoniae BS458]
 gi|1490397|emb|CAA91553.1| DNA gyrase [Streptococcus pneumoniae]
 gi|73916244|gb|AAZ92990.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916262|gb|AAZ92999.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916276|gb|AAZ93006.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916288|gb|AAZ93012.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916298|gb|AAZ93017.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916300|gb|AAZ93018.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916302|gb|AAZ93019.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916304|gb|AAZ93020.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916306|gb|AAZ93021.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916308|gb|AAZ93022.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916310|gb|AAZ93023.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916312|gb|AAZ93024.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916314|gb|AAZ93025.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916316|gb|AAZ93026.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916320|gb|AAZ93028.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916326|gb|AAZ93031.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916330|gb|AAZ93033.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916332|gb|AAZ93034.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916334|gb|AAZ93035.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916338|gb|AAZ93037.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916340|gb|AAZ93038.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916342|gb|AAZ93039.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916350|gb|AAZ93043.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|168996023|gb|ACA36635.1| DNA gyrase, B subunit [Streptococcus pneumoniae Hungary19A-6]
 gi|182629059|gb|ACB90007.1| DNA gyrase subunit B [Streptococcus pneumoniae CGSP14]
 gi|183574700|gb|EDT95228.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC0288-04]
 gi|220674066|emb|CAR68579.1| DNA gyrase subunit B [Streptococcus pneumoniae ATCC 700669]
 gi|225721919|gb|ACO17773.1| DNA gyrase, B subunit [Streptococcus pneumoniae 70585]
 gi|225722735|gb|ACO18588.1| DNA gyrase, B subunit [Streptococcus pneumoniae JJA]
 gi|301801650|emb|CBW34348.1| DNA gyrase subunit B [Streptococcus pneumoniae INV200]
 gi|302597164|gb|EFL64269.1| DNA gyrase subunit B [Streptococcus pneumoniae BS455]
 gi|302637614|gb|EFL68101.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS292]
 gi|302638598|gb|EFL69062.1| DNA gyrase subunit B [Streptococcus pneumoniae SP-BS293]
 gi|302641740|gb|EFL72097.1| DNA gyrase subunit B [Streptococcus pneumoniae BS458]
 gi|302644172|gb|EFL74428.1| DNA gyrase subunit B [Streptococcus pneumoniae BS457]
 gi|302646553|gb|EFL76779.1| DNA gyrase subunit B [Streptococcus pneumoniae BS397]
 gi|327390163|gb|EGE88506.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA04375]
 gi|332076087|gb|EGI86553.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA41301]
 gi|332202670|gb|EGJ16739.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA41317]
          Length = 648

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|73916260|gb|AAZ92998.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVYVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI  
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRX 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|23099148|ref|NP_692614.1| DNA topoisomerase IV subunit B [Oceanobacillus iheyensis HTE831]
 gi|22777376|dbj|BAC13649.1| DNA topoisomerase IV subunit B [Oceanobacillus iheyensis HTE831]
          Length = 651

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 259/617 (41%), Positives = 384/617 (62%), Gaps = 18/617 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             +  Y   SIQ+L+GLDAV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   I
Sbjct: 2   TSDYQYSDSSIQVLEGLDAVRKRPGMYIGSTD-IRGLHHLVYEIVDNAVDEALAGYGKEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S +V D+GRG+PT +H + G    EVI T LHAGGKF Q SYK SGGLHGVG
Sbjct: 61  QVTIHKDESVSVKDSGRGMPTGMH-QTGKPTTEVIFTVLHAGGKFGQGSYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS WL++   R+G  Y+  F N G     L   G      G+ + F P   IFS
Sbjct: 120 ASVVNALSEWLEVTTFRDGFQYQQRFENGGRPVTTLEKKGPT-RKKGSVIRFKPDPTIFS 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +NY+T+  RLRE +FL   ++I LID+R  +       Y  G+++FV YL+  K  L
Sbjct: 179 TIVYNYETISERLRESAFLLKGLKIELIDERHDK--HDVYEYPEGLKSFVDYLNEEKDAL 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               + ++G +  I ++ A ++NDG+ EN+L F N++  +DGGTH SG R+A+TR +  Y
Sbjct: 237 HS-IVFMEGEQQEIEVEFAFQFNDGFAENMLSFVNHVRTRDGGTHESGARTAITRTVNDY 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             +    K+ ++++ G D REG T V+S+++P+   +F  QTK KL ++E RS V+S ++
Sbjct: 296 ARRQGLLKEKEKNLEGTDIREGLTGVVSVRVPEDKLQFEGQTKGKLGTTEARSAVDSVIS 355

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           + L+ +LEE+P  + +++KK + A   R+AAR+AR+   T +K     A L GKL     
Sbjct: 356 EHLNYFLEENPDISGMLIKKSIKAKEAREAARKAREEARTGKKRKRKDALLSGKLTPAQS 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R+P+K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+   +  ++EI T+I 
Sbjct: 416 RNPEKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLQDVFKNEEISTIIH 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G D F+++ ++Y KIIIMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  P
Sbjct: 476 TIGAGVGGD-FNLDDVQYDKIIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKIFIALP 534

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PL+ ++    + + L+Y  DE+ L+  +        I+ +     + +       ++ + 
Sbjct: 535 PLFKVSKGKGKQEKLRYAWDEQELKVAIQELKQGYTIQRYKGLGEMNADQLWETTMNPSS 594

Query: 596 K--IDKLIKDFYPNHDK 610
           +  I   I D      +
Sbjct: 595 RTLIRVSIDDIARAERR 611



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 373 IKKSIKAKEAREAARKAREEARTGKKRKRKDALLSGKLTPAQSRNPEKNELYLVEGDSAG 432

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QAV+     V N E  +  +V    +++  ++ I       ++      
Sbjct: 433 GSAKQGRDRKFQAVLPLRGKVINTEKAKLQDVFKNEEISTIIHTIGAGVGGDFNLDDVQY 492

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717
           D ++           +      F +      + + +I      +  +       +K++  
Sbjct: 493 DKIIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKIFIALPPLFKVSKGKGKQEKLRYA 552

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L       ++G ++QRYKGLGEMNA QLWETT+NP +R+L+RV I D ++A+   
Sbjct: 553 WDEQELKVAIQELKQGYTIQRYKGLGEMNADQLWETTMNPSSRTLIRVSIDDIARAERRV 612

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+ +
Sbjct: 613 TTLMGDKVEPRRKWIEGH 630


>gi|210612462|ref|ZP_03289320.1| hypothetical protein CLONEX_01521 [Clostridium nexile DSM 1787]
 gi|210151570|gb|EEA82577.1| hypothetical protein CLONEX_01521 [Clostridium nexile DSM 1787]
          Length = 640

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 253/621 (40%), Positives = 360/621 (57%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YDADSI IL+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY D I 
Sbjct: 3   KQNTYDADSISILEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGYCDKIQ 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L  DGS TV DNGRG+P  +H++ G+SAA ++ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 62  VILEKDGSATVIDNGRGVPVGMHQK-GVSAARIVYTTLHAGGKFDDTAYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS ++ ++I REG I+   +  GI    L      V G     TGTEV FLP   
Sbjct: 121 SVVNALSIYMDVKISREGAIHHDRYERGIPVVELENGLLPVIGKT-RKTGTEVNFLPDDT 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + ++ RL E ++LN ++ I   D+R  +   I    + GI  F+  L++ K
Sbjct: 180 IFEKTRFKAEEVKSRLHETAYLNPNLTIIFEDRRGAQTEHIEYHEEDGILGFIRDLNQKK 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +   PI  +G  + I +++  ++ + +HENVL F NNI   +GGTHL+G ++  T  +
Sbjct: 240 EAIH-EPIYFKGESEGIEVEVVFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTAM 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +         
Sbjct: 299 NQYARELGILKEKDSNFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAAKATGKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + +  + + +    K ++     A+ +R    +A+     K         GKLA+C  R
Sbjct: 359 GEEIVRYFDRNLDTLKKVISCAEKAAKIRKTEEKAKTNLLTKQK-YSFDSNGKLANCESR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DASKCEIFIVEGDSAGGSAKTARDRSYQAILPIRGKILNVEKASIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY+KIIIM DADVDGAHI TLLLT F+R MP LI  G +YI 
Sbjct: 478 FGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPELIFEGHVYIA 537

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY    +    +Y+ D+++LE Y   Q     ++ +     + +       ++   +
Sbjct: 538 MPPLYKAMPKKGEEEYLYDDKALERYRKRQKGPFTLQRYKGLGEMDADQLWETTLNPETR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           + KL++        +  E  +
Sbjct: 598 MLKLVEIEDARMASSVTEMLM 618



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/96 (47%), Positives = 59/96 (61%), Gaps = 3/96 (3%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
             G++  +      L+      +KG  ++QRYKGLGEM+A QLWETTLNP+TR L  V+I
Sbjct: 547 KKGEEEYLYD-DKALERYRKR-QKGPFTLQRYKGLGEMDADQLWETTLNPETRMLKLVEI 604

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            DA  A  +   LMG EV PRR FI EN+  + LDI
Sbjct: 605 EDARMASSVTEMLMGSEVPPRRAFIYENATEAELDI 640


>gi|225374474|ref|ZP_03751695.1| hypothetical protein ROSEINA2194_00089 [Roseburia inulinivorans DSM
           16841]
 gi|225213712|gb|EEG96066.1| hypothetical protein ROSEINA2194_00089 [Roseburia inulinivorans DSM
           16841]
          Length = 638

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 253/620 (40%), Positives = 352/620 (56%), Gaps = 15/620 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + YD  SI +L+GL+AV+KRP MYIG      GL+H+IYE++DN++DE L G  D I VT
Sbjct: 2   AGYDEHSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNSVDEHLAGACDTIHVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSCTV DNGRG+P  +H + G+SAA ++ T LHAGGKF+  +YK SGGLHGVG SV
Sbjct: 61  LEKNGSCTVEDNGRGVPVGMHAK-GVSAARLVYTTLHAGGKFDDSAYKTSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSDIF 182
           VNALS ++ + I REG I+   +  G+    L        G     TGT+V FLP  +IF
Sbjct: 120 VNALSVYMDVEISREGYIHHDRYERGVPVVELENGLLPKIGKTK-KTGTKVNFLPDPEIF 178

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F  D ++ R+ E ++LN  + I   D+R  E   I    + GI  FV  L+++ + 
Sbjct: 179 EKTRFKEDEIKSRMHETAYLNPKLTIIYEDRRGEEVEHIVYHEEDGIRGFVKDLNKNTEV 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +  +G  + I+++ A ++ + +HEN+L F NNI   +GGTH++G ++  T  I S
Sbjct: 239 LH-DVVYFKGESEGITVEAAFQYTNEFHENILGFCNNIFNAEGGTHITGFKTVFTTVINS 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +    K+   +  G D R G T+V+SIK PDPRF  QTK KL + +          D
Sbjct: 298 YARELGILKEKDVNFTGADVRNGMTAVVSIKHPDPRFEGQTKTKLDNQDAAKATAKVTGD 357

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +  + +++    K ++     A+ +R    RA+     K      S  GKLA+C  RD 
Sbjct: 358 EIQLFFDKNLETLKTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDS-NGKLANCESRDA 416

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
              E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A G
Sbjct: 417 SICEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKASIDKVLANAEIKTMINAFG 476

Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +Y+  P
Sbjct: 477 CGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVAMP 536

Query: 540 PLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN-FIDDALKI 597
           PLY  I      +Y+ D+ +LE Y      S          G +    L    ++ A ++
Sbjct: 537 PLYKVIPGKGEEEYLYDDAALEKYRKAHKGSNFTLQRYKGLGEMDAEQLWETTLNPATRM 596

Query: 598 DKLIKDFYPNHDKTFIEQAV 617
            K I+           E  +
Sbjct: 597 LKRIEIEDGRMASDITELLM 616



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 4/96 (4%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
            G++  +    + L+       KG   ++QRYKGLGEM+A QLWETTLNP TR L R++I
Sbjct: 545 KGEEEYLYD-DAALEKYRK-AHKGSNFTLQRYKGLGEMDAEQLWETTLNPATRMLKRIEI 602

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            D   A D+   LMG++V PR+ FI E++  + LD+
Sbjct: 603 EDGRMASDITELLMGNDVPPRKTFIYEHAHDAELDV 638


>gi|270290230|ref|ZP_06196455.1| DNA topoisomerase IV, B subunit [Pediococcus acidilactici 7_4]
 gi|270281011|gb|EFA26844.1| DNA topoisomerase IV, B subunit [Pediococcus acidilactici 7_4]
          Length = 677

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 261/595 (43%), Positives = 366/595 (61%), Gaps = 13/595 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YD  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   I V
Sbjct: 2   KTTYDDSSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGYGKEINV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  D S TV D+GRG+P  +H + G   AEVI T LHAGGKF Q  YK SGGLHGVG S
Sbjct: 61  TIRSDNSITVVDHGRGMPVGMH-KSGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  L + I R+   YE +F+N G     L   G      GT VTF P   IF+  
Sbjct: 120 VVNALSEKLTVEIVRDKMKYEENFVNGGHPVGTLKKVGKTKESNGTTVTFKPDPTIFTTT 179

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN++TL  RLRE +FL   V+I+L D+R+   +     Y+ GI+ FV YL+   K  + 
Sbjct: 180 VFNFNTLAVRLRESAFLLKGVKITLTDERAGHEQAEEYLYEEGIKEFVEYLNED-KDTLG 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           + +   GS+  I +++A ++NDGY E VL F NN+  KDGGTH  G+RS  T+    +  
Sbjct: 239 NIMYFDGSKHGIEVEIAGQYNDGYSETVLSFVNNVRTKDGGTHEVGMRSGWTKAFNEFAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K    K+  +++ G D REG ++V+SI++P+    F  QTKEKL + E R +VE+ V++ 
Sbjct: 299 KVGLLKEKDKNLEGSDVREGLSAVISIRVPEELLEFEGQTKEKLGTPEARPIVEAVVSEQ 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           L  +L E+   A+ +V+K ++A   R AAR+ARD   T ++       L GKL     ++
Sbjct: 359 LGFFLMENGEFAQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKLTPAQSKN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            KK+ELFLVEGDSAGGSAKQGR+R+ QAILPLRGK+LN E+A+   ++ ++EI T+I  +
Sbjct: 419 AKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTIIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F +    Y K+IIMTDAD DGAHI+TLLLTFF++ M  +I  G +YI  PPL
Sbjct: 479 GAGVG-PEFKVEDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIYIALPPL 537

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           Y +     +   ++Y   +E LE+          ++ F     + +       ++
Sbjct: 538 YKLQKGANKKTKIEYAWTDEELEEVSKKMGRGFSLQRFKGLGEMNADQLWETTMN 592



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 3/262 (1%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +  +      +  +    +   E     +   ++  L        SKN  +N +     
Sbjct: 370 AQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKLTPAQSKNAKKNELFLVEG 429

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
                      + K      +   V N E  +  ++    ++   +  I       +   
Sbjct: 430 DSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTIIYTIGAGVGPEFKVE 489

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK 715
            +N D ++           +      F +      I + +I      +  L      K K
Sbjct: 490 DSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIYIALPPLYKLQKGANKKTK 549

Query: 716 ITG--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I        L+ +     +G S+QR+KGLGEMNA QLWETT+NPDTR+L+RV+I D + A
Sbjct: 550 IEYAWTDEELEEVSKKMGRGFSLQRFKGLGEMNADQLWETTMNPDTRTLVRVRIDDDTLA 609

Query: 774 DDLFSRLMGDEVEPRREFIQEN 795
           +   + LMGD+VEPRR++I+ N
Sbjct: 610 ERRVTTLMGDKVEPRRKWIESN 631


>gi|73916264|gb|AAZ93000.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + ++  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENRDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVIKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|262282828|ref|ZP_06060595.1| DNA topoisomerase IV subunit B [Streptococcus sp. 2_1_36FAA]
 gi|262261080|gb|EEY79779.1| DNA topoisomerase IV subunit B [Streptococcus sp. 2_1_36FAA]
          Length = 647

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 274/623 (43%), Positives = 395/623 (63%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TVSD+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVSDHGRGMPVGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           +  IFS  DF Y+T+  RL+E +FL  +V++SL D+R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 NDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTGEK--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGSD-FTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  LED          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRRKFGKGAMLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 57/73 (78%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L+ +     KG  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMG
Sbjct: 564 LEDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMG 623

Query: 783 DEVEPRREFIQEN 795
           D+VEPRR++I++N
Sbjct: 624 DKVEPRRKWIEDN 636


>gi|328956387|ref|YP_004373773.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4]
 gi|328672711|gb|AEB28757.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4]
          Length = 647

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 288/590 (48%), Positives = 404/590 (68%), Gaps = 5/590 (0%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S   +   YDA  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L G+A
Sbjct: 9   SKQDRAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDEALAGFA 67

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I + +  D S TV DNGRGIP D+  + G  A E + T LHAGGKF    YKVSGGLH
Sbjct: 68  DEINLIIEKDESITVIDNGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLH 127

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L + + ++G IY   +  G + + + V G   +  GT V F+P  +I
Sbjct: 128 GVGSSVVNALSITLDVYVHKDGKIYHQQYAQGKVVHDVEVIGET-DKHGTTVHFVPDPEI 186

Query: 182 FSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F    +F++D L  R+REL+FLN  ++I++ DKR  + + +   Y+GGI+++V +L+ +K
Sbjct: 187 FKETVEFHFDKLATRVRELAFLNKGLKITVEDKREGKEKFLEYHYEGGIKSYVEFLNENK 246

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L   PI ++G +  I++++AM+  DGYH N+L F NNI   +GGTH  G ++ALTR I
Sbjct: 247 TVLYDEPIFLEGEQQGITLEVAMQHTDGYHNNLLSFANNIHTYEGGTHEFGFKTALTRVI 306

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +K+   K+++ ++ G+D REG T VLSIK PDP+F  QTK KL +SE R++ +   
Sbjct: 307 NDYAKKNKIIKENEENLTGEDVREGLTIVLSIKHPDPQFEGQTKTKLGNSEARTITDRLF 366

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +     +L E+P  A+ IV+K L A+  R AA+RAR++TR+K  L+I++LPGKLADCS +
Sbjct: 367 SAHFDKFLMENPQVARQIVEKGLLAARARLAAKRAREVTRKKSGLEISNLPGKLADCSSK 426

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+++EI +L TA
Sbjct: 427 DPTISELFIVEGDSAGGSAKQGRSRLFQAILPIRGKILNVEKATLDRILANEEIRSLFTA 486

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTG G D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++YI +PP
Sbjct: 487 MGTGFGND-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPP 545

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           LY + +GK + Y+  EE L++YL    LS + +       G +    L  
Sbjct: 546 LYQVRQGKKMVYLDSEEELDNYLKEIPLSPKPVIQRYKGLGEMDAEQLWE 595



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT+NP+ R +L+V + DA +AD     LMGD VEPRR FI+EN
Sbjct: 579 IQRYKGLGEMDAEQLWETTMNPENRRMLQVTVDDAIEADKSCDMLMGDRVEPRRLFIEEN 638

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 639 ARYVQNLDI 647


>gi|169828512|ref|YP_001698670.1| DNA topoisomerase IV subunit B [Lysinibacillus sphaericus C3-41]
 gi|168993000|gb|ACA40540.1| DNA topoisomerase 4 subunit B [Lysinibacillus sphaericus C3-41]
          Length = 667

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 265/661 (40%), Positives = 387/661 (58%), Gaps = 16/661 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++    S Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+ 
Sbjct: 11  TNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGFG 69

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V ++ D S +V D GRG+PT +H + G    E+I T LHAGGKF Q  YK SGGLH
Sbjct: 70  SHIIVKIHKDQSISVRDFGRGMPTGMH-KMGKPTPEIIFTVLHAGGKFGQGGYKTSGGLH 128

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           GVG SVVNALS++L++ I R+G  Y   F + G     L   G     TGT V FLP   
Sbjct: 129 GVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGHPVTTLEEIGHTK-QTGTLVHFLPDET 187

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFSV  FNYDTL  RLRE +FL   ++I LID+R  E +    FY+ GIEAFV+YL+  K
Sbjct: 188 IFSVTKFNYDTLAERLRESAFLLKGLKIELIDER-EEGKNDVFFYENGIEAFVAYLNEEK 246

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L      ++G +D+I ++ A ++NDGY E +L F NN+  +DGGTH +G ++ALTR  
Sbjct: 247 DVLHP-VKYVEGIQDDIEVEFAFQYNDGYSETILSFVNNVRTRDGGTHETGAKAALTRVF 305

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVES 358
             Y  K    K   +++ G D REG  +++S+++P+   +F  QTK KL +SE RS V+S
Sbjct: 306 NEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVDS 365

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLAD 416
            V++ +   LEE+   +  +V+K + A  VR+AAR+AR+     +K       L GKL  
Sbjct: 366 VVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLTP 425

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              R+  K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   ++ ++EI T
Sbjct: 426 AQSRNAAKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEIST 485

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I A+G G+G   F +    Y+K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++I
Sbjct: 486 IIHAIGAGVG-TDFAVEDSAYNKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFI 544

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
             PPLY ++    + + ++Y   E  L+  +        ++ +     + +       ++
Sbjct: 545 ALPPLYKVSKGTGKKEVIEYAWTENDLQKAIKQVGKGYILQRYKGLGEMNADQLWDTTMN 604

Query: 593 -DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            D   + ++  +     ++              +  +          AN L     + E+
Sbjct: 605 PDTRTLIRVTIEDGARAERRVTTLMGDKVEPRRKWIEANVDFGMEDDANILENEFIQQEE 664

Query: 652 S 652
            
Sbjct: 665 G 665



 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 11/260 (4%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              R + ++    +   +     ++      L        S+N      ++   ++    
Sbjct: 388 KAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLTPAQSRN---AAKNELYLVEGDSA 444

Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                  +    QA++     V N E  +  ++    +++  ++ I       +    + 
Sbjct: 445 GGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEISTIIHAIGAGVGTDFAVEDSA 504

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI--- 716
            + +V           +      F +      I + ++      +  +     K ++   
Sbjct: 505 YNKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFIALPPLYKVSKGTGKKEVIEY 564

Query: 717 -TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                 L   I  +G KG  +QRYKGLGEMNA QLW+TT+NPDTR+L+RV I D ++A+ 
Sbjct: 565 AWTENDLQKAIKQVG-KGYILQRYKGLGEMNADQLWDTTMNPDTRTLIRVTIEDGARAER 623

Query: 776 LFSRLMGDEVEPRREFIQEN 795
             + LMGD+VEPRR++I+ N
Sbjct: 624 RVTTLMGDKVEPRRKWIEAN 643


>gi|73916266|gb|AAZ93001.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK+IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKLIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|73916248|gb|AAZ92992.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVIKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|119512311|ref|ZP_01631397.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414]
 gi|119463024|gb|EAW43975.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414]
          Length = 645

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 293/591 (49%), Positives = 394/591 (66%), Gaps = 9/591 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L G+   I V
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGHCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV+D+GRGIPTD H   G SA E ++T LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  DINADGSVTVTDDGRGIPTDTHSRTGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGLS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R+  ++   +  G+    L         TGT + F P S IF +  
Sbjct: 121 VVNALSDVLEVTVWRDNKVHVQRYERGVPVTELQAKPDKEGKTGTSINFKPDSQIFINSV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+Y T+  RLREL++LN+ V+I   D R     S  PR  T  YKGGI+ +++Y++R K
Sbjct: 181 EFDYITIAGRLRELAYLNAGVKIIFGDHRLELLKSDTPRIETYEYKGGIKEYIAYMNRDK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +PL +  I + G R+N+ ++++++W  D Y +NVL F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QPLHEEIIYVHGERNNVQVEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +   K    K+++ ++ G+  REG T+V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 LNAIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + LS +LE HP  A  I+ K + A    +AAR AR+L RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLSEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP +SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + E+ +LIT
Sbjct: 421 RDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG G+  D FD  +LRYH+I+IMTDADVDGAHIRTLLLTFF+R   +LI  GF+YI  P
Sbjct: 481 ALGLGVKGDEFDSTQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALIEQGFIYIACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PL+ + RGK+ +Y   E  L+ YL     +           G +    L +
Sbjct: 541 PLFKVERGKNHEYCYSERELQQYLGTLPSNANYNIQRFKGLGEMMPQQLWD 591



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 4/137 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI- 729
           V    +      F +  +   I    I      +  +    +         L   + ++ 
Sbjct: 509 VDGAHIRTLLLTFFYRYQRALIEQGFIYIACPPLFKVERGKNHEYCYSERELQQYLGTLP 568

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
                ++QR+KGLGEM   QLW+TT+NP++R + +V+I DA++AD +F+ LMGD V PRR
Sbjct: 569 SNANYNIQRFKGLGEMMPQQLWDTTMNPESRKMKQVEIEDAAEADRIFTILMGDRVAPRR 628

Query: 790 EFIQENSLPSA---LDI 803
           EFI+          LDI
Sbjct: 629 EFIETYGSKLNFTDLDI 645


>gi|30021698|ref|NP_833329.1| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 14579]
 gi|228959781|ref|ZP_04121456.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047280|ref|ZP_04192879.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH676]
 gi|229128869|ref|ZP_04257845.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-Cer4]
 gi|29897253|gb|AAP10530.1| Topoisomerase IV subunit B [Bacillus cereus ATCC 14579]
 gi|228654574|gb|EEL10436.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-Cer4]
 gi|228724022|gb|EEL75368.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH676]
 gi|228799911|gb|EEM46853.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 654

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 267/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N GI    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGIPVTTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+  R       +  +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|139439853|ref|ZP_01773218.1| Hypothetical protein COLAER_02252 [Collinsella aerofaciens ATCC
           25986]
 gi|133774781|gb|EBA38601.1| Hypothetical protein COLAER_02252 [Collinsella aerofaciens ATCC
           25986]
          Length = 650

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 283/649 (43%), Positives = 382/649 (58%), Gaps = 16/649 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T   SGLHH+++E++DN++DE++ G+   I VT++ D S TV DNGRGIP D H 
Sbjct: 1   MYIGSTSA-SGLHHLVWEIVDNSVDEAMAGFCTEIQVTVHADNSITVVDNGRGIPVDEHP 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
            + I   EV+MT LHAGGKF+  +YKVSGGLHGVG+SVVNALS  + ++++R+GN YEM 
Sbjct: 60  VKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVGISVVNALSKRVVVQVRRDGNTYEME 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F  G     + V G   + TGT VTF P  +IF    +++DTL +RL+E +FLN +++I 
Sbjct: 120 FSRGKTVKKMEVVG-TSDSTGTTVTFWPDDEIFETCIYDFDTLHNRLQETAFLNKNLKIV 178

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGSRD-------NISID 260
           L D+R   P      Y+GGI  FV +L+  K      + PI I+G  D          ++
Sbjct: 179 LTDEREATPHVEEFCYEGGIIDFVKFLNEGKDVPEAFKEPIYIEGKSDPDAPVAKMGEVE 238

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           ++++WN GY ENV+ F N+I   +GG HL G R+ALTR I  Y  K    K+   ++ GD
Sbjct: 239 VSLQWNSGYGENVMSFANDIYTPEGGMHLEGFRTALTRVINDYARKQNLLKEKDANLTGD 298

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG ++V+S+K+PDP+F  QTK KL SS +R++    V DGL  +LEEHP  A+ IVK
Sbjct: 299 DVREGLSAVISVKLPDPQFEGQTKAKLGSSYMRALTLKIVTDGLVDYLEEHPKPAREIVK 358

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K   A   R+AAR+AR+ TRRK +L+ ASLPGKLADCS RD + +ELF+VEGDSAGGSAK
Sbjct: 359 KAQQACKARNAARKAREATRRKSLLETASLPGKLADCSVRDAELTELFIVEGDSAGGSAK 418

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI-----GQDSFDINKL 495
            GR R+ QAILPLRGKILNVER    +  SS  I +LITA+G G+         FDI K 
Sbjct: 419 DGRRRDIQAILPLRGKILNVERVGDHRAFSSDTIQSLITAIGCGVTTSAGDGGDFDITKA 478

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RYHKIIIMTDADVDGAHIR LLLTFF++ M  LI  G++Y+  PP++GI     + YV  
Sbjct: 479 RYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDAGYVYVACPPIFGIKVRNKIHYVYP 538

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
                +  I +   + + L  D      K                        D   +  
Sbjct: 539 NGRQPEDEILRDTIQSLGLNPDDNDEDGKAKDGKITKKRKGYTVQRYKGLGEMDPKQLAS 598

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
             +           I  ++ +  A R    +E   +  +   +  D   
Sbjct: 599 TTMDPKTRILQRVSIEDAVVADRAVRELMGSEVGYRREYIEKHAHDARF 647



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           RKG ++QRYKGLGEM+  QL  TT++P TR L RV I DA  AD     LMG EV  RRE
Sbjct: 577 RKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVSIEDAVVADRAVRELMGSEVGYRRE 636

Query: 791 FIQENSLPSA-LD 802
           +I++++  +  LD
Sbjct: 637 YIEKHAHDARFLD 649


>gi|228478351|ref|ZP_04062959.1| DNA topoisomerase IV, B subunit [Streptococcus salivarius SK126]
 gi|228250030|gb|EEK09300.1| DNA topoisomerase IV, B subunit [Streptococcus salivarius SK126]
          Length = 649

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 278/649 (42%), Positives = 399/649 (61%), Gaps = 17/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D+I VTLN DGS +VSD+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDVIAVTLNKDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G++Y   F N G     L   G A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF ++T+  RL+E +FL  +V ++L D R  E       Y+ G++ FVSYL+
Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I I G +    ++LA+++NDGY +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 239 EDKETLTP-VIYIDGDQQEFHLELALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++V+S+ +P+   +F  QTK+KL S   R +
Sbjct: 298 KALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +V+K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590
           +YI  PPLY +++GK  + V +    +  L           I       G ++ + L   
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAILQRYKGLGEMNADQLWET 596

Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
               +    I   I D      +  +     +       +  +  +L  
Sbjct: 597 TMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       ++    N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K ++    
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEVVEYA 560

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     +G  +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGRGAILQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 621 SVLMGDKAAPRRQWIEDN 638


>gi|116492722|ref|YP_804457.1| DNA topoisomerase IV subunit B [Pediococcus pentosaceus ATCC 25745]
 gi|116102872|gb|ABJ68015.1| DNA topoisomerase IV subunit B [Pediococcus pentosaceus ATCC 25745]
          Length = 679

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 269/684 (39%), Positives = 391/684 (57%), Gaps = 15/684 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     +SYD  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MA-KTSKTSYDDSSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+  D S TV D+GRG+P  +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GKEINVTIQADNSITVVDHGRGMPVGMH-KSGKPTPEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS  L + I R+   YE +F+N G     L   G   N  GT VTF P  
Sbjct: 118 HGVGASVVNALSEKLTVEIVRDKVKYEETFVNGGHPVGTLKKVGKTTNKNGTTVTFKPDK 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF+   FN++TL  RLRE +FL   V+I+L D+R    +     Y  GI+ FV YL+  
Sbjct: 178 EIFTTTVFNFNTLAVRLRESAFLLRGVKITLTDRREGHEQHEEYLYDEGIKQFVDYLNED 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  + + +   G++  I +++A ++NDGY E +L F NN+  +DGGTH  G+RS  T+ 
Sbjct: 238 -KDTLGNIMYFDGTKKGIEVEVAGQYNDGYSETILSFVNNVRTRDGGTHEVGMRSGWTKA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              +  K    K+  +++ G D REG ++V+S+++P+    F  QTKEKL + E R +V+
Sbjct: 297 FNEFARKMGLLKEKDKNLEGSDVREGLSAVISVRIPEELLEFEGQTKEKLGTPEARPIVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ L  +L E+   A+ +V+K ++A   R AAR+ARD   T ++       L GKL 
Sbjct: 357 AIVSEQLGFFLMENGEFAQQLVRKAINAREARVAARKARDESRTGKRKKKQERILSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ KK+ELFLVEGDSAGGSAKQGR+R+ QAILPLRGK+LN E+A+   ++ ++EI 
Sbjct: 417 PAQSKNSKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F++    Y K+IIMTDAD DGAHI+TLLLTFF++ M  +I  G +Y
Sbjct: 477 TIIYTIGAGVG-TEFNVQDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIY 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY +     +   + Y   +E LE           ++ F     + +       +
Sbjct: 536 IALPPLYKLQKGLNKKVKIAYAWTDEELESVSKQMGRGFSLQRFKGLGEMNADQLWETTM 595

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA-SKLANRLNFIAEKSE 650
           +   +    ++       +  +   +   V       E NV+    +  + L+  A K E
Sbjct: 596 NPETRTLVRVRIDDDTLAERRVTTLMGDKVEPRRKWIESNVAFTLEEDGSILDNEAVKHE 655

Query: 651 KSWHGSINNSDILVKRIARGVQEQ 674
                  N S+   + I   ++  
Sbjct: 656 HEAGDPTNTSNETFEEIKLDIENN 679



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 3/262 (1%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +  +      +  +    +   E     +   +E  L        SKN  +N +     
Sbjct: 374 AQQLVRKAINAREARVAARKARDESRTGKRKKKQERILSGKLTPAQSKNSKKNELFLVEG 433

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
                      + K      +   V N E  +  ++    ++   +  I       ++  
Sbjct: 434 DSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTIIYTIGAGVGTEFNVQ 493

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK 715
            +N D ++           +      F +      I + +I      +  L      K+K
Sbjct: 494 DSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIYIALPPLYKLQKGLNKKVK 553

Query: 716 ITG--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I        L+++     +G S+QR+KGLGEMNA QLWETT+NP+TR+L+RV+I D + A
Sbjct: 554 IAYAWTDEELESVSKQMGRGFSLQRFKGLGEMNADQLWETTMNPETRTLVRVRIDDDTLA 613

Query: 774 DDLFSRLMGDEVEPRREFIQEN 795
           +   + LMGD+VEPRR++I+ N
Sbjct: 614 ERRVTTLMGDKVEPRRKWIESN 635


>gi|157151650|ref|YP_001450529.1| DNA topoisomerase IV subunit B [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157076444|gb|ABV11127.1| DNA topoisomerase IV, B subunit [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 649

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 273/623 (43%), Positives = 393/623 (63%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TVSD+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVSDHGRGMPVGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGSD-FTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|307706371|ref|ZP_07643183.1| DNA gyrase, B subunit [Streptococcus mitis SK321]
 gi|307618289|gb|EFN97444.1| DNA gyrase, B subunit [Streptococcus mitis SK321]
          Length = 648

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G     TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDTE-RTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPDHRLMARVSVDDAAEADKI 621



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++PD
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPD 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|225861290|ref|YP_002742799.1| DNA gyrase subunit B [Streptococcus pneumoniae Taiwan19F-14]
 gi|298255372|ref|ZP_06978958.1| DNA gyrase subunit B [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503188|ref|YP_003725128.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|73916290|gb|AAZ93013.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916294|gb|AAZ93015.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916296|gb|AAZ93016.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|225727003|gb|ACO22854.1| DNA gyrase, B subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238783|gb|ADI69914.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 648

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F+P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPKIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R++L
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTSL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|148992476|ref|ZP_01822171.1| DNA gyrase subunit B [Streptococcus pneumoniae SP9-BS68]
 gi|149021676|ref|ZP_01835707.1| DNA gyrase subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|168489810|ref|ZP_02714009.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP195]
 gi|237649436|ref|ZP_04523688.1| DNA gyrase subunit B [Streptococcus pneumoniae CCRI 1974]
 gi|307127642|ref|YP_003879673.1| DNA gyrase subunit B [Streptococcus pneumoniae 670-6B]
 gi|73916238|gb|AAZ92987.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916272|gb|AAZ93004.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916274|gb|AAZ93005.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916292|gb|AAZ93014.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916324|gb|AAZ93030.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|147928793|gb|EDK79806.1| DNA gyrase subunit B [Streptococcus pneumoniae SP9-BS68]
 gi|147930137|gb|EDK81123.1| DNA gyrase subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|183571773|gb|EDT92301.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP195]
 gi|301793963|emb|CBW36359.1| DNA gyrase subunit B [Streptococcus pneumoniae INV104]
 gi|306484704|gb|ADM91573.1| DNA gyrase, B subunit [Streptococcus pneumoniae 670-6B]
 gi|332073065|gb|EGI83544.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA17570]
 gi|332204817|gb|EGJ18882.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA47901]
          Length = 648

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F+P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPKIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|154506273|ref|ZP_02043011.1| hypothetical protein RUMGNA_03815 [Ruminococcus gnavus ATCC 29149]
 gi|153793412|gb|EDN75832.1| hypothetical protein RUMGNA_03815 [Ruminococcus gnavus ATCC 29149]
          Length = 650

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 254/625 (40%), Positives = 362/625 (57%), Gaps = 15/625 (2%)

Query: 3   DNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +N+ ++++YDADSI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L G+ 
Sbjct: 9   ENMGKSNTYDADSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGFC 67

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I VTL  DGS TV D+GRG+P  +H++ GISAA ++ T LHAGGKF+  +YK SGGLH
Sbjct: 68  KNIHVTLEKDGSATVEDDGRGVPVGMHQK-GISAARLVYTTLHAGGKFDDSAYKTSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFL 176
           GVG SVVNALS ++ ++I REG I+   +  G+    L        G     TGT+V FL
Sbjct: 127 GVGSSVVNALSVYMDVQISREGYIHHDRYERGVPVVELEDGLLPTIGKT-RKTGTKVNFL 185

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   IF    F  + ++ RL E ++LN  + I   DKR      I      GI  F+  L
Sbjct: 186 PDDTIFEKTKFRAEEVKSRLHETAYLNPELTIVFDDKRPDSQEHIEYHEPDGILGFIRDL 245

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           ++ K+ L   PI  +G+ + I ++ A ++ + +HENVL F NNI   +GGTHL+G ++  
Sbjct: 246 NQKKEVLH-DPIYFKGTAEGIEVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTF 304

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T  +  Y  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +     
Sbjct: 305 TTVMNQYARELGILKEKDSNFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKAT 364

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
                D +  + + +    K ++     A+ +R    +A+     K         GKLA+
Sbjct: 365 GKVTGDEIVLYFDRNVETLKKVLSCAEKAAKIRKTEEKAKTNLLTKQK-YSFDSNGKLAN 423

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  RD KK E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T
Sbjct: 424 CESRDAKKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLANAEIKT 483

Query: 477 LITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +I A G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G 
Sbjct: 484 MINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGH 543

Query: 534 LYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           +YI  PPLY +  +    +Y+ D+++LE Y         ++ +     + +       ++
Sbjct: 544 VYIAMPPLYKVMPKKGEEEYLYDDKALEKYRRTHDGGFTLQRYKGLGEMDADQLWETTLN 603

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAV 617
              +I KL++           E  +
Sbjct: 604 PETRILKLVEIEDARMASGVTEMLM 628



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 51/71 (71%)

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           G ++QRYKGLGEM+A QLWETTLNP+TR L  V+I DA  A  +   LMG EV PRR FI
Sbjct: 580 GFTLQRYKGLGEMDADQLWETTLNPETRILKLVEIEDARMASGVTEMLMGTEVPPRRAFI 639

Query: 793 QENSLPSALDI 803
            EN+  + LDI
Sbjct: 640 YENATEAELDI 650


>gi|78707341|gb|ABB46477.1| DNA gyrase subunit B [Acholeplasma brassicae]
          Length = 591

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 270/570 (47%), Positives = 379/570 (66%), Gaps = 9/570 (1%)

Query: 24  VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83
           V+KRP MYIG T GE GLHH+++E++DN+IDE + GYAD IT+ L  +    V+DNGRGI
Sbjct: 1   VRKRPGMYIGST-GERGLHHLVWEIVDNSIDECMAGYADEITIELLPNNIVKVTDNGRGI 59

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143
           P DLH +    A E I+T LHAGGKF+ KSYKVSGGLHGVG SVVNAL+ W ++ I R+G
Sbjct: 60  PVDLHPKTHRPAVETILTVLHAGGKFDGKSYKVSGGLHGVGSSVVNALTVWFRVTIARDG 119

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            +Y+  +  G+    L V G + + TGT + FL   +IF   + ++++ L++R++EL+FL
Sbjct: 120 KLYQQEYKRGVPQYDLKVIGESSH-TGTVIEFLADDEIFKEVNTYDFERLRNRIQELAFL 178

Query: 203 NSSVQISLIDKR---SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           N +V+I++ D+R   + +    +  Y+GGI  +V +L+  K+ + ++ I I+   D I++
Sbjct: 179 NRNVKINISDQRDPKTEKHVYYSYQYEGGIIEYVHFLNTSKQEVNKTVIYIEKEIDGITV 238

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           +LA+++N  Y  N+  F NNI   +GG H  G + ALTR +  Y ++    K    S IG
Sbjct: 239 ELALQYNSDYSTNLFSFANNIHTHEGGMHEDGFKLALTRVLGRYAQEQNILK-KDESFIG 297

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           +D REG T+++SIK PDP+F  QTK KL + EVR +      + L  +L E+P +AK I+
Sbjct: 298 EDTREGLTAIVSIKHPDPQFEGQTKTKLGNPEVRQITSQITGEILERYLMENPADAKAII 357

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +K+L AS  R AAR+AR+ TRRK  LD+     KLADC  + P+ SE+++VEGDSAGGSA
Sbjct: 358 EKILMASRARIAARKAREATRRKSPLDMLGFASKLADCRNKSPEISEIYIVEGDSAGGSA 417

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQGR  E QAILPLRGK+LNVE++R DK+LS++EI ++I A GTGIG+D FD  K RYHK
Sbjct: 418 KQGRDSEFQAILPLRGKVLNVEKSRLDKILSNKEILSMIQAFGTGIGED-FDAAKARYHK 476

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           I+IMTDADVDGAHIRTLLLTF +R +  LI  G++YI +PPLY +  GK ++YV DEE L
Sbjct: 477 IVIMTDADVDGAHIRTLLLTFLYRHLKGLIDMGYVYIAQPPLYKVQSGKKVEYVYDEERL 536

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
              ++               G ++   L  
Sbjct: 537 PK-VLEAFGGRPQIQRYKGLGEMNPEQLWE 565



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
             L  + +G K++       L  +     GR    +QRYKGLGEMN  QLWETT++P TR
Sbjct: 516 PPLYKVQSGKKVEYVYDEERLPKVLEAFGGR--PQIQRYKGLGEMNPEQLWETTMDPTTR 573

Query: 761 SLLRVKITDASQADDLFS 778
           +LLRV + DA  AD +FS
Sbjct: 574 TLLRVSLQDAMNADQVFS 591


>gi|312863196|ref|ZP_07723434.1| DNA topoisomerase IV, B subunit [Streptococcus vestibularis F0396]
 gi|311100732|gb|EFQ58937.1| DNA topoisomerase IV, B subunit [Streptococcus vestibularis F0396]
          Length = 649

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 393/623 (63%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D+I VTLN DGS +VSD+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDVIAVTLNNDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+GN+Y   F N G     L   G A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGNVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF ++T+  RL+E +FL  +V ++L D R  E       Y+ G++ FVSYL+
Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I I G +    +++A+++NDGY +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 239 EDKETLTP-VIYIDGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++V+S+ +P+   +F  QTK+KL S   R +
Sbjct: 298 KALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +V+K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590
           +YI  PPLY +++GK  + V +    +  L           I       G ++ + L   
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAILQRYKGLGEMNADQLWET 596

Query: 591 I---DDALKIDKLIKDFYPNHDK 610
               +    I   I D      +
Sbjct: 597 TMDPETRTLIRVTIDDLARAERR 619



 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       ++    N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K ++    
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEVVEYA 560

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     +G  +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGRGAILQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 621 SVLMGDKPAPRRQWIEDN 638


>gi|218898691|ref|YP_002447102.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9842]
 gi|228902097|ref|ZP_04066261.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 4222]
 gi|228966492|ref|ZP_04127545.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|229075491|ref|ZP_04208480.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-18]
 gi|229098040|ref|ZP_04228990.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-29]
 gi|229117058|ref|ZP_04246440.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-3]
 gi|218543471|gb|ACK95865.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9842]
 gi|228666462|gb|EEL21922.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-3]
 gi|228685477|gb|EEL39405.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-29]
 gi|228707740|gb|EEL59924.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-18]
 gi|228793214|gb|EEM40764.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857523|gb|EEN02019.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 4222]
          Length = 654

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 265/663 (39%), Positives = 399/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+  R       +  +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|229104127|ref|ZP_04234801.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-28]
 gi|228679334|gb|EEL33537.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-28]
          Length = 654

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 265/663 (39%), Positives = 399/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+  R       +  +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + F +  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNANQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA+QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNANQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|240146989|ref|ZP_04745590.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
 gi|257200860|gb|EEU99144.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
          Length = 640

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 256/621 (41%), Positives = 358/621 (57%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   YD  SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L G  D I 
Sbjct: 3   KTGGYDESSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGACDTIC 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGSCTV DNGRG+P  +H + G+SAA ++ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 62  VTLEADGSCTVEDNGRGVPVGMHAK-GVSAARIVYTTLHAGGKFDDSAYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS+ + + I R+G I+   +  GI    L        G     TGT+V FLP  +
Sbjct: 121 SVVNALSTHMDVWISRDGYIHHDGYERGIPVVELENGLLPTIGKTK-KTGTKVNFLPDPE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  D ++ R+ E ++LN ++ I   DKR PE   I    + GI  FV  L++  
Sbjct: 180 IFEKTRFKEDEVKSRMHETAYLNPALTIIYEDKRGPEVEHIVYHEEEGIIGFVKDLNKKN 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    +  +G +D I+++ A ++ + +HEN+L F NNI   +GGTH++G ++  T  I
Sbjct: 240 EVLH-DVVYFKGEQDGITVEAAFQYTNEFHENILGFCNNIFNAEGGTHITGFKTVFTTVI 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +   V     
Sbjct: 299 NSYARELGILKEKDSNFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNQDAARVTAKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D +  + +++    K ++     A+ +R    RA+     K      S  GKLA+C  R
Sbjct: 359 GDEIQLYFDKNLEVLKTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDS-NGKLANCESR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D    E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DASICEIFIVEGDSAGGSAKTARDRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +Y+ 
Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVA 537

Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY  I      +Y+ D+ +LE Y  N   +  ++ +     + ++      ++   +
Sbjct: 538 MPPLYKAIPSKGEEEYLYDDAALERYRRNHKSNFTLQRYKGLGEMDAEQLWETTLNPETR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           I K I+           E  +
Sbjct: 598 ILKRIEIEDGRMASDITELLM 618



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           ++   G++  +    + L+      +   ++QRYKGLGEM+A QLWETTLNP+TR L R+
Sbjct: 544 AIPSKGEEEYLYD-DAALERYRRNHKSNFTLQRYKGLGEMDAEQLWETTLNPETRILKRI 602

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +I D   A D+   LMG++V PR+ FI E++  +ALDI
Sbjct: 603 EIEDGRMASDITELLMGNDVPPRKMFIYEHAKDAALDI 640


>gi|306829208|ref|ZP_07462398.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus mitis
           ATCC 6249]
 gi|304428294|gb|EFM31384.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus mitis
           ATCC 6249]
          Length = 648

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRCGHVVADLEVVGDT-DKTGTTVHFTP 178

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF+    F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPEIFTETTTFDFEKLNKRVQELAFLNRGLRISITDKREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +   PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDKPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         SK  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L    S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|183980040|ref|YP_001848331.1| DNA gyrase (subunit B) GyrB [Mycobacterium marinum M]
 gi|183173366|gb|ACC38476.1| DNA gyrase (subunit B) GyrB [Mycobacterium marinum M]
          Length = 692

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 270/652 (41%), Positives = 381/652 (58%), Gaps = 39/652 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A +I +L+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GYA 
Sbjct: 20  KKKAQDEYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGYAT 78

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120
            + V L  DGS  V+DNGRGIP  +H   G    +V+MT+LHAGGKF      Y VSGGL
Sbjct: 79  QVNVRLLDDGSVEVADNGRGIPVAMHA-TGAPTVDVVMTQLHAGGKFGGENSGYNVSGGL 137

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ L++ IKR+G  +   +        L   G A   TGT + F    D
Sbjct: 138 HGVGVSVVNALSTRLEVDIKRDGYEWSQFYDRAQP-GTLKQ-GEATKKTGTTIRFWADPD 195

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------- 214
           IF   +++++T+  RL+E++FLN  + I+L D+R                          
Sbjct: 196 IFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTPDEVVDDVVSDTAEAPKSAQEKAA 255

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                 + +  T  Y GG+  FV +++R K P+ QS +  +G      +++AM+WN GY 
Sbjct: 256 ESTAPHKVKSRTFHYPGGLVDFVKHINRTKSPIQQSIVDFEGKGSGHEVEIAMQWNGGYS 315

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+
Sbjct: 316 ESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAVI 375

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+++ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK IV K + ++  R 
Sbjct: 376 SVRVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTIVNKAVSSAQARL 435

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAI
Sbjct: 436 AARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAI 495

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD++KLRYHKI++M DADVDG
Sbjct: 496 LPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLSKLRYHKIVLMADADVDG 554

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            HI TLLLT  FR M  LI NG +++ +PPLY +   ++       +   D L+   L  
Sbjct: 555 QHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRTEPEFAYSDRERDGLLEAGLKA 614

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
             ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 615 GKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 664



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 607 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 665

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 666 SILMGEDVDARRSFITRNAKDVRFLDV 692


>gi|322372517|ref|ZP_08047053.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C150]
 gi|321277559|gb|EFX54628.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C150]
          Length = 649

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 274/623 (43%), Positives = 392/623 (62%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D+I VTLN DGS +VSD+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDVIAVTLNKDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G++Y   F N G     L   G A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF ++T+  RL+E +FL  +V ++L D R  E       Y+ G++ FV+YL+
Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEIREEFHYENGVQDFVTYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I I G +    +++A+++NDGY +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 239 EDKETLTP-VIYIDGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           +    Y  K+   K+  +++ G D REG ++V+S+ +P+   +F  QTK+KL S   R +
Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +V+K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590
           +YI  PPLY +++GK  + V +    +  L           +       G ++ + L   
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWET 596

Query: 591 I---DDALKIDKLIKDFYPNHDK 610
               +    I   I D      +
Sbjct: 597 TMDPETRTLIRVTIDDLARAERR 619



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       ++    N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K ++    
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEVVEYA 560

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     +G  +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 621 SVLMGDKPAPRRQWIEDN 638


>gi|228940682|ref|ZP_04103245.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973600|ref|ZP_04134182.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980158|ref|ZP_04140472.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis Bt407]
 gi|228779516|gb|EEM27769.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis Bt407]
 gi|228786061|gb|EEM34058.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818926|gb|EEM64988.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941316|gb|AEA17212.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 654

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+  R       +  +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|294792391|ref|ZP_06757538.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27]
 gi|294456290|gb|EFG24653.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27]
          Length = 645

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 305/585 (52%), Positives = 413/585 (70%), Gaps = 4/585 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A +IQ+L+GLDAV+KRP MYIG T    GLHH++YEV+DN++DE+L GYA  I
Sbjct: 13  MPEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSVDEALAGYATHI 71

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++N D S TV D+GRGIPT +H E G+SA E+++ +LHAGGKF    YKVSGGLHGVG
Sbjct: 72  EVSINPDNSVTVVDDGRGIPTGMH-ESGMSAVELVLMKLHAGGKFGGGGYKVSGGLHGVG 130

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS W K+++ + G + E+SF  G   + L   G A   TGT V F P ++IF  
Sbjct: 131 ISVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAE-GTGTTVIFKPDAEIFET 189

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++DTL+ RL+EL+FLN  ++I+L D R  EPR  +  Y+GG+ +F+++L+ +K+ + 
Sbjct: 190 TVFSFDTLKMRLQELAFLNKGLRITLSDLRLEEPRVESFHYEGGLVSFITFLNENKEAIN 249

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            + I I+ ++D++ +D+A+++ND Y EN+L F NNI   DGGTHLSG R+ALTR +  Y 
Sbjct: 250 PTVINIENTKDDVVVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYG 309

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            KS   K+ + ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEV+ + +  V +GL
Sbjct: 310 RKSGLIKESESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGL 369

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             + EEHP +AK I++K   AS  R+AAR+ARDLTRRK  L+++SLPGKLADCSE+D   
Sbjct: 370 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 429

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG
Sbjct: 430 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 489

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M  L+  G +YI +PPLY I
Sbjct: 490 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 548

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +GKS  YV  +  L   L                G ++   L  
Sbjct: 549 KKGKSHWYVYSDAELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWE 593



 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 6/203 (2%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +        +   + N E  +   +   +++ + +          +  + +  +
Sbjct: 446 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 502

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720
            ++      V    +      F +      +    I       L  I  G     +    
Sbjct: 503 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 561

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            L   +  +GR G ++QRYKGLGEMN  QLWETT+NPD R++L+V + D+ +AD +F+ L
Sbjct: 562 ELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWETTMNPDNRTILQVSLEDSIEADKIFTVL 621

Query: 781 MGDEVEPRREFIQENSLPS-ALD 802
           MGD+VEPRR+FI++N+     LD
Sbjct: 622 MGDKVEPRRKFIEDNAKYVRNLD 644


>gi|218235058|ref|YP_002368410.1| DNA topoisomerase IV subunit B [Bacillus cereus B4264]
 gi|229111021|ref|ZP_04240580.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-15]
 gi|229146164|ref|ZP_04274539.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST24]
 gi|218163015|gb|ACK63007.1| DNA topoisomerase IV, B subunit [Bacillus cereus B4264]
 gi|228637223|gb|EEK93678.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST24]
 gi|228672384|gb|EEL27669.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-15]
          Length = 654

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+  R       +  +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|320546627|ref|ZP_08040939.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus equinus
           ATCC 9812]
 gi|320448682|gb|EFW89413.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus equinus
           ATCC 9812]
          Length = 649

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 270/623 (43%), Positives = 389/623 (62%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I V LN DGS TV D GRG+PT  H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNQIDVILNQDGSVTVKDQGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTTVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V ++L D+R  E   +   Y  G++ FV YL+
Sbjct: 179 DDKIFSTTDFKFNTIAERLKESAFLLKDVTLTLTDERPEEAEHLEFHYVNGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L      + G      +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 239 EDKETLTPVIW-VTGEDQGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  KS   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDSIVSEKLTFFLLENGEVASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   ++ ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGGGVGAD-FKVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  LE+         +++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 597 TMNPETRTLIRVTIEDLARAERR 619



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +    +N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEEINTMIYTIGGGVGADFKVENSNY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEQVEYA 560

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 621 NVLMGDKVEPRRKWIEDN 638


>gi|322385164|ref|ZP_08058811.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus cristatus
           ATCC 51100]
 gi|321270788|gb|EFX53701.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus cristatus
           ATCC 51100]
          Length = 649

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/623 (43%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D+R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLRNVRLSLTDERTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|157363918|ref|YP_001470685.1| DNA gyrase, B subunit [Thermotoga lettingae TMO]
 gi|157314522|gb|ABV33621.1| DNA gyrase, B subunit [Thermotoga lettingae TMO]
          Length = 630

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/629 (44%), Positives = 380/629 (60%), Gaps = 25/629 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A+SI+ILKGL+AV+ RP MYIG T G+SGLHH++YE++DN+IDE + G+ + I VT
Sbjct: 2   TDYKAESIRILKGLEAVRLRPGMYIGST-GKSGLHHLVYEIVDNSIDEVMAGFCNTIRVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D +  + DNGRGIP D H E G SA EV+MT LHAGGKF++  YKVSGGLHGVG SV
Sbjct: 61  LFEDNTVEIEDNGRGIPVDTHPETGRSALEVVMTTLHAGGKFSKNIYKVSGGLHGVGASV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  L++ I +EG IY   +  G     + V G      GT V F P   IFS+  F
Sbjct: 121 VNALSEILEVWIHKEGKIYYQKYSRGFPQCEVTVIGETDKQ-GTIVRFKPDDQIFSILKF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           + D ++++LREL+FLN  V+I    +       +TM Y+GG+  +  YL   +KP+    
Sbjct: 180 DPDLIENKLRELAFLNPQVKIIF--EDLANEYTVTMHYEGGLREYARYLASGRKPIH-ET 236

Query: 248 IRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           I + G  D I + +A+ + D Y  E +  + NNI   D GTH++  ++  T+ +  Y   
Sbjct: 237 IEVSGELDEIIVKIAIMYTDSYEEEKIYSYANNIRTIDHGTHVTAFKNTFTKMLNEYARS 296

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K    S  G+D REG  +++++ M +P F  QTK KL S      V   + + LS 
Sbjct: 297 LGILK-KDESFSGEDVREGLIAIVTVLMKEPEFEGQTKSKLGSESAGIAVSRILKEKLSE 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + E +    K+I++KVL     R+AAR+AR+L RRK  ++  SLPGKLADC   + + SE
Sbjct: 356 YFEVNKQVLKVILEKVLKTMRAREAARKARELARRKNAMENLSLPGKLADCVSSNVENSE 415

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSAGGSAKQ R RE QAILPLRGKILNVE++   K+L++++I  +I A+GTGIG
Sbjct: 416 LFIVEGDSAGGSAKQARDREYQAILPLRGKILNVEKSSMQKLLANEQIKDIIVAVGTGIG 475

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            DSFD +KLRY KIIIMTDAD+DGAHIRTLLLTFFFR M  LI +G +YI  PPLY ++ 
Sbjct: 476 -DSFDSSKLRYGKIIIMTDADIDGAHIRTLLLTFFFRYMKPLIEDGRIYIAVPPLYKVSF 534

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN-------------FID 592
             +  YV  EE  +          ++E       G ++   L                I+
Sbjct: 535 SSNSVYVYTEEDFQALRRELGEERKLEVQRYKGLGEMNPEQLWETTMNPETRKLIQVNIE 594

Query: 593 DALKIDKLIKDF---YPNHDKTFIEQAVI 618
           +A + D L +      P+  + FIE+  +
Sbjct: 595 NAEEADALFEILMGESPSERRRFIERHAL 623



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 2/185 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++ + +  +      S+  S      ++      +    +    
Sbjct: 446 ILNVEKSSMQKLLANEQIKDIIVAVGTGIGDSFDSSKLRYGKIIIMTDADIDGAHIRTLL 505

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRY 739
             F F      I   RI      +  +  + + + +            +G  + + +QRY
Sbjct: 506 LTFFFRYMKPLIEDGRIYIAVPPLYKVSFSSNSVYVYTEEDFQALRRELGEERKLEVQRY 565

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEMN  QLWETT+NP+TR L++V I +A +AD LF  LMG+    RR FI+ ++L  
Sbjct: 566 KGLGEMNPEQLWETTMNPETRKLIQVNIENAEEADALFEILMGESPSERRRFIERHALKV 625

Query: 800 A-LDI 803
             LD+
Sbjct: 626 TYLDV 630


>gi|312193902|ref|YP_004013963.1| DNA gyrase, B subunit [Frankia sp. EuI1c]
 gi|311225238|gb|ADP78093.1| DNA gyrase, B subunit [Frankia sp. EuI1c]
          Length = 646

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 276/585 (47%), Positives = 376/585 (64%), Gaps = 12/585 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YDA SI++L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+ D ITVTL
Sbjct: 2   AYDASSIKVLEGLDAVRKRPGMYIGST-GERGLHHLVSEVVDNSVDEALAGFCDTITVTL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V DNGRGIP  +H  E     EV++T LHAGGKF+  SY VSGGLHGVG+SVV
Sbjct: 61  LADGGVRVVDNGRGIPVGMHPTEKRPTVEVVLTILHAGGKFDSDSYAVSGGLHGVGISVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSVQD 186
           NALS+ +++ IK +G  +   +       PL        G  TGT VTF   ++IF   +
Sbjct: 121 NALSTKVEVEIKVDGFHWFQRYTAQRP-GPLEKRAPLKRGERTGTTVTFWADAEIFETTE 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y+TL  RL+E++FLN  + ISL D+R+ EP E+T  Y+ G+  FV++L+  K+P+ ++
Sbjct: 180 YKYETLYRRLQEMAFLNKGISISLRDERAEEPVEVTFKYENGLADFVAHLNATKEPIHKT 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            + ++     I  ++AM+WN GY+E+V  F N I   +GGTH  G R+ALT  +  Y ++
Sbjct: 240 IVALEAKGKGIEAEVAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNVYAKE 299

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD REG T+++S+K+ +P+F  QTK KL ++E +  V+  
Sbjct: 300 QNLLKPVKAGAKSPDERLSGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEAKKFVQEM 359

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
               L  W + + +EA+ IV K LDA   R AAR ARDLTRRKG+L    LPGKL+DC  
Sbjct: 360 CYSALRDWFDANRVEARSIVGKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLSDCQY 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP++ EL++VEGDSAGGSAK GR  + QAILPLRGKILNVE+AR D++L + E+  LI 
Sbjct: 420 TDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQALIQ 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGI  D FDI KLRYHKI++M DADVDG HIRTLLLT  FR M  L+  G +++ +P
Sbjct: 480 ALGTGI-HDEFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGHVFLAQP 538

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           PLY I  G+        +   D L+ + +    +L  D+      
Sbjct: 539 PLYKIKWGREDWEYAYSDRERDGLLERGVEAGRKLPKDAIQRFKG 583



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 3/85 (3%)

Query: 722 LLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           LL+     GRK    ++QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS 
Sbjct: 562 LLERGVEAGRKLPKDAIQRFKGLGEMNATELWDTTMDPDRRILLQVTLDDAAVADELFSV 621

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
           LMG++V+ RR FIQ N+     LDI
Sbjct: 622 LMGEDVDARRSFIQRNAKDVRFLDI 646


>gi|295110276|emb|CBL24229.1| DNA topoisomerase IV subunit B [Ruminococcus obeum A2-162]
          Length = 641

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 247/623 (39%), Positives = 356/623 (57%), Gaps = 23/623 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  +YDA SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY  +I 
Sbjct: 3   KKETYDAGSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCSLIH 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L  DGSCTV+DNGRGIP D+H++ G+SA  ++ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 62  VVLEKDGSCTVTDNGRGIPVDMHEK-GMSAERLVFTTLHAGGKFDNSAYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS++L +++ R+G ++   +  G+    L        G    +TGT + FLP  +
Sbjct: 121 SVVNALSTYLDIKVSRDGYVHHDHYEQGVPTLELENGLLPKLGRTK-ETGTCINFLPDPE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+   ++ RL E ++LN  + I   D R  E  +       GI  ++  ++   
Sbjct: 180 IFEKTRFSATDVKSRLHETAYLNPELTIVFEDLRGTETVKEEYHEPEGIVGYIQDMNHST 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L   P+ ++G  D I +++A ++ + + ENVL F NNI   +GGTHL+G ++  T  +
Sbjct: 240 EALH-EPVYLKGEADGIQVEVAFQYTNEFRENVLGFCNNIYNAEGGTHLTGFKTTFTTVM 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y  +    K    +  G D R G T+V+SIK P PRF  QTK KL + +        +
Sbjct: 299 NTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQDAAKATGKVL 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  + + +    K I+     A+ +R    RA+     K      S  GKLA+C ++
Sbjct: 359 GEQLVLYFDRNLETLKTILSCAEKAAKIRKTEERAKTNLLTKQKYSFDS-NGKLANCEKK 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DPAQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI+KLRY KI+IM DADVDGAHI TLLLT F+R MP LI+ G +YI 
Sbjct: 478 FGCGFSEGYGNDFDISKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 537

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY    +    +Y+ D+++LE Y                 G +    L         
Sbjct: 538 MPPLYKAMPKKGPEEYLYDDKALEKYRKTHKPGSFTLQRYKGLGEMDAEQLW-------- 589

Query: 597 IDKLIKDFYPNHDKTFIEQAVIS 619
            +  +        +  IE A ++
Sbjct: 590 -ETTLNPETRRMKRVEIEDARLA 611



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 51/69 (73%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTLNP+TR + RV+I DA  A  +   LMG EV PR+ FI E
Sbjct: 573 TLQRYKGLGEMDAEQLWETTLNPETRRMKRVEIEDARLASSVTEVLMGSEVPPRKAFIYE 632

Query: 795 NSLPSALDI 803
           ++  + LD+
Sbjct: 633 HAADAELDV 641


>gi|15900699|ref|NP_345303.1| DNA gyrase subunit B [Streptococcus pneumoniae TIGR4]
 gi|15902759|ref|NP_358309.1| DNA gyrase subunit B [Streptococcus pneumoniae R6]
 gi|111658143|ref|ZP_01408840.1| hypothetical protein SpneT_02000668 [Streptococcus pneumoniae
           TIGR4]
 gi|116516156|ref|YP_816203.1| DNA gyrase subunit B [Streptococcus pneumoniae D39]
 gi|149007692|ref|ZP_01831309.1| DNA gyrase subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|168486180|ref|ZP_02710688.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1087-00]
 gi|225856480|ref|YP_002737991.1| DNA gyrase subunit B [Streptococcus pneumoniae P1031]
 gi|61225463|sp|P0A4L9|GYRB_STRPN RecName: Full=DNA gyrase subunit B
 gi|61225464|sp|P0A4M0|GYRB_STRR6 RecName: Full=DNA gyrase subunit B
 gi|14972283|gb|AAK74943.1| DNA gyrase subunit B [Streptococcus pneumoniae TIGR4]
 gi|15458306|gb|AAK99519.1| DNA gyrase [Streptococcus pneumoniae R6]
 gi|73916240|gb|AAZ92988.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916246|gb|AAZ92991.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916250|gb|AAZ92993.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916256|gb|AAZ92996.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916258|gb|AAZ92997.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916270|gb|AAZ93003.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916328|gb|AAZ93032.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916336|gb|AAZ93036.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916346|gb|AAZ93041.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916348|gb|AAZ93042.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|116076732|gb|ABJ54452.1| DNA gyrase, B subunit [Streptococcus pneumoniae D39]
 gi|147760847|gb|EDK67818.1| DNA gyrase subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|183570816|gb|EDT91344.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1087-00]
 gi|225726173|gb|ACO22025.1| DNA gyrase, B subunit [Streptococcus pneumoniae P1031]
          Length = 648

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L + G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|194467407|ref|ZP_03073394.1| DNA gyrase, B subunit [Lactobacillus reuteri 100-23]
 gi|194454443|gb|EDX43340.1| DNA gyrase, B subunit [Lactobacillus reuteri 100-23]
          Length = 649

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 292/600 (48%), Positives = 396/600 (66%), Gaps = 14/600 (2%)

Query: 1   MSDNIQNS-------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           MS+  Q          YDA  IQ+LKGLDAV+KRP MYIG T  + GLHH+++E++DN I
Sbjct: 1   MSNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGI 59

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE+L G+ D I V +N D S TV DNGRGIP D  KE G SA E + T LHAGGKF    
Sbjct: 60  DEALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQKETGKSALETVFTVLHAGGKFGGGG 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGT 171
           YKVSGGLHGVG SVVNALS+ L +++ R+G  Y M F +G + + + V   G    + GT
Sbjct: 120 YKVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGT 179

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F P  +IF     +N  TL  RLREL+FLN  ++I++ D R  +       Y+GGI 
Sbjct: 180 TVHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLRQADHERKEFHYEGGIR 239

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            +V YL+  +  L   PI ++G  ++I++++++++ D Y  N+L FTNNI   +GGTH +
Sbjct: 240 HYVEYLNEDQNVLFDPPIYVEGKENDITVEVSLQYTDSYRSNLLTFTNNIHTYEGGTHET 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G + ALTR I  Y  K+   K ++ ++ GDD REG T+V+SIK PDP+F  QTK KL +S
Sbjct: 300 GFKMALTRVINDYGHKAGVLKSNE-TLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNS 358

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           + R+  +       + +L EHP EA+ I++K   AS  R AA+RAR++TR+K  L+I++L
Sbjct: 359 DARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNL 418

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLAD + +DP+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+
Sbjct: 419 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLA 478

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           + EI +L TALGTG G D FDI K  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I 
Sbjct: 479 NDEIRSLFTALGTGFG-DDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIT 537

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +G++YI +PPLY + +GK ++Y+  +E LE  + +   S + +       G +    L  
Sbjct: 538 HGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 597



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R LLRVK+ DA QAD +F  LMG +V PRR+FI++N
Sbjct: 581 IQRYKGLGEMDAEQLWETTMDPENRHLLRVKLDDAEQADKIFPMLMGTKVGPRRDFIEQN 640

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 641 AKFVENLD 648


>gi|15790024|ref|NP_279848.1| DNA gyrase subunit B [Halobacterium sp. NRC-1]
 gi|10580452|gb|AAG19328.1| DNA gyrase subunit B [Halobacterium sp. NRC-1]
          Length = 611

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 280/562 (49%), Positives = 371/562 (66%), Gaps = 5/562 (0%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG TD   GLHH++YEV+DN+IDE+L GY D I VTL+ DGS +V+D+GRGIP   H+
Sbjct: 1   MYIGSTDA-RGLHHLVYEVVDNSIDEALAGYCDRIDVTLHDDGSVSVTDDGRGIPVATHE 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E    A EVI+T LHAGGKF+ KSY+VSGGLHGVGVSVVNALS  L + + R+G  Y   
Sbjct: 60  EYDRPAVEVILTVLHAGGKFDAKSYQVSGGLHGVGVSVVNALSERLAVEVSRDGARYREQ 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F  G     L   G + +D+GT + F P S+IF    +++ TL++RLREL+FLNS V+I+
Sbjct: 120 FERGEPVTDLQHVGDS-DDSGTLIRFRPDSEIFETTAYDFSTLENRLRELAFLNSGVEIT 178

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+R  EP + T  Y+GGI  FV YL+  +  L    I  QG  D IS+++AM+ ++  
Sbjct: 179 LTDERGDEPTQSTFEYEGGIREFVEYLNETRNALHDDVIYFQGEDDGISVEIAMQASEDV 238

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK-RSVIGDDCREGFTS 328
             +   F NNI  ++GGTHL+G ++ALTR +  Y   +    +    ++ GDD REG T+
Sbjct: 239 QSSTHAFANNINTREGGTHLTGFKTALTRTVNDYANDNNLLSELDGENLTGDDIREGLTA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K PDP+F  QTK KL +SEVR +VE  VNDGL  + EE+P  AK +V+  ++A+  
Sbjct: 299 VISVKHPDPQFEGQTKTKLGNSEVRGIVERAVNDGLGTYFEENPATAKAVVRTAVEAAKA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AA++A +LTRRK  L   SLPGKLADC  + P+ +ELF+VEGDSAGGSAKQGR+   Q
Sbjct: 359 RKAAKKAEELTRRKSALGSTSLPGKLADCQSKAPEDAELFVVEGDSAGGSAKQGRNPGFQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPL GKILNVE+ R D++L   E+  +ITALGTGIG D FDI++LRY  II+MTDADV
Sbjct: 419 AILPLGGKILNVEKHRLDRILEHDELRHIITALGTGIG-DEFDIDELRYENIIMMTDADV 477

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DGAHIRTLLLTFF+R M  L+  G++Y  +PPLY I    +      E   E  +  Q  
Sbjct: 478 DGAHIRTLLLTFFYRHMKPLLEAGYVYAAQPPLYRIRYRGNTYDAMTEADRERIVEEQCN 537

Query: 569 -SEEIELFCDSKGVISKNDLRN 589
            +          G ++   L +
Sbjct: 538 GNPTQVQRFKGLGEMNPQQLWD 559



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QR+KGLGEMN  QLW+TT++P+ R L R+ + DA+ AD +FS LMGD VEPR++FIQE
Sbjct: 542 QVQRFKGLGEMNPQQLWDTTMDPENRILKRITVEDAAAADKMFSVLMGDAVEPRKQFIQE 601

Query: 795 NSLPSA-LDI 803
            +  +  +DI
Sbjct: 602 RAGDAEWVDI 611


>gi|148543248|ref|YP_001270618.1| DNA gyrase subunit B [Lactobacillus reuteri DSM 20016]
 gi|184152660|ref|YP_001841001.1| DNA gyrase subunit B [Lactobacillus reuteri JCM 1112]
 gi|227364311|ref|ZP_03848404.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri MM2-3]
 gi|325683510|ref|ZP_08163026.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           reuteri MM4-1A]
 gi|148530282|gb|ABQ82281.1| DNA gyrase subunit B [Lactobacillus reuteri DSM 20016]
 gi|183224004|dbj|BAG24521.1| DNA gyrase subunit B [Lactobacillus reuteri JCM 1112]
 gi|227070624|gb|EEI08954.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri MM2-3]
 gi|324977860|gb|EGC14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           reuteri MM4-1A]
          Length = 649

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 292/600 (48%), Positives = 396/600 (66%), Gaps = 14/600 (2%)

Query: 1   MSDNIQNS-------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           MS+  Q          YDA  IQ+LKGLDAV+KRP MYIG T  + GLHH+++E++DN I
Sbjct: 1   MSNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGI 59

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE+L G+ D I V +N D S TV DNGRGIP D  KE G SA E + T LHAGGKF    
Sbjct: 60  DEALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQKETGKSALETVFTVLHAGGKFGGGG 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGT 171
           YKVSGGLHGVG SVVNALS+ L +++ R+G  Y M F +G + + + V   G    + GT
Sbjct: 120 YKVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGT 179

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F P  +IF     +N  TL  RLREL+FLN  ++I++ D R  +       Y+GGI 
Sbjct: 180 TVHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLRQADHERKEFHYEGGIR 239

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            +V YL+  +  L   PI ++G  ++I++++++++ D Y  N+L FTNNI   +GGTH +
Sbjct: 240 HYVEYLNEDQNVLFDPPIYVEGKENDITVEVSLQYTDSYRSNLLTFTNNIHTYEGGTHET 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G + ALTR I  Y  K+   K ++ ++ GDD REG T+V+SIK PDP+F  QTK KL +S
Sbjct: 300 GFKMALTRVINDYGHKAGILKSNE-TLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNS 358

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           + R+  +       + +L EHP EA+ I++K   AS  R AA+RAR++TR+K  L+I++L
Sbjct: 359 DARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNL 418

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLAD + +DP+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+
Sbjct: 419 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLA 478

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           + EI +L TALGTG G D FDI K  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I 
Sbjct: 479 NDEIRSLFTALGTGFG-DDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIT 537

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +G++YI +PPLY + +GK ++Y+  +E LE  + +   S + +       G +    L  
Sbjct: 538 HGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 597



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R LLRVK+ DA QAD +F  LMG +V PRR+FI++N
Sbjct: 581 IQRYKGLGEMDAEQLWETTMDPENRHLLRVKLDDAEQADKIFPMLMGTKVGPRRDFIEQN 640

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 641 AKFVENLD 648


>gi|259502126|ref|ZP_05745028.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus antri
           DSM 16041]
 gi|259169939|gb|EEW54434.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus antri
           DSM 16041]
          Length = 648

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 288/599 (48%), Positives = 395/599 (65%), Gaps = 13/599 (2%)

Query: 1   MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MSD  +       S YDA  IQ+LKGLDAV+KRP MYIG T  + GLHH+++E++DN ID
Sbjct: 1   MSDEQKETKAQLASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I V +N D S TV DNGRGIP D+  + G  A E + T LHAGGKF    Y
Sbjct: 60  EALAGFCTEINVEVNPDNSITVRDNGRGIPVDIQGQTGKPALETVFTILHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTE 172
           KVSGGLHGVG SVVNALS+ L +++ R+G  Y M F +G +   + V       +  GT 
Sbjct: 120 KVSGGLHGVGASVVNALSTELDVKVARQGKEYYMDFDHGHVKTAMKVINDHLPEDVHGTT 179

Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F P   IF     +N  TL +RLREL+FLN  ++I++ DKR  + +     Y+GGI  
Sbjct: 180 VHFKPDPAIFRETTVYNIKTLTNRLRELAFLNKGLKITIEDKRDEDSQRQDFHYEGGIRH 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           +V YL+  K  L + PI ++G  + I++++++++ D Y   +L FTNNI   +GGTH +G
Sbjct: 240 YVDYLNEDKTTLFEPPIYVEGKENGITVEVSLQYTDSYRSELLTFTNNIHTYEGGTHETG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            + ALTR I  Y  K+   K ++ ++ GDD REG T+V+SIK PDP+F  QTK KL +S+
Sbjct: 300 FKMALTRVINDYGHKANILKSNE-TLSGDDVREGMTAVVSIKHPDPQFEGQTKTKLGNSD 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            R+  +       + +L EHP EA+ I++K   AS  R AA+RAR++TR+K  L+I++LP
Sbjct: 359 ARTATDHVFAATFNRFLMEHPEEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLAD + +DP  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++
Sbjct: 419 GKLADNTSKDPSISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLAN 478

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +EI +L TALGTG G+D FDI K  YHK+IIMTDADVDGAHIRTLLLT  +R M  +I +
Sbjct: 479 EEIRSLFTALGTGFGED-FDIEKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMRPMITH 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           G++YI +PPLY + +GK ++Y++ +E LE  + +   S + +       G +    L  
Sbjct: 538 GYVYIAQPPLYQVRQGKFVRYIESDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 596



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 54/68 (79%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R LLRV++ DA QA+++F  LMG +V PRR+FI++N
Sbjct: 580 IQRYKGLGEMDAEQLWETTMDPENRHLLRVQLDDAEQANEIFPMLMGTKVGPRRDFIEQN 639

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 640 AKFVENLD 647


>gi|238810228|dbj|BAH70018.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 644

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 253/597 (42%), Positives = 371/597 (62%), Gaps = 13/597 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  N+ +  YDA +I++L+GL+AV+ RP MYIG T G  GLHH+I+E++DN++DE++ G+
Sbjct: 1   MGGNM-SKEYDASNIKVLEGLEAVRVRPGMYIG-TTGIRGLHHLIWEIVDNSVDEAMAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A+ + +T+  DG   V DNGRGIPT +H + G+S  E ++T LHAGGKF+  SYKVSGGL
Sbjct: 59  ANKVEITITKDGYIDVIDNGRGIPTAVHPKTGLSTVETVLTVLHAGGKFDSDSYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178
           HGVG SVVN LS   ++ +KR+G ++   F N G +   L +       DTGT + F P 
Sbjct: 119 HGVGASVVNGLSDDFEVWVKRDGKLHYAHFNNGGKILQHLTILNEVDPQDTGTRIKFHPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I    +++   +    +++++LN  ++I + D+R     E     +GGI  +V  L+ 
Sbjct: 179 FSIMDKNEWDKGVIVDHAKQIAYLNKGLRIIVNDERDKSREEYHF--EGGIVDYVKELNT 236

Query: 239 HKKPLMQSPIRIQGS-----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +K +    I  +G         + +++A+++N+    NV+ + NNI   +GGTH SG  
Sbjct: 237 GQKLIHPDVIYAEGEYSFQDSPAVQVEVAVQYNERITGNVVSYANNIITVEGGTHESGFY 296

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            AL R + +Y  +    K ++  V  +D REG  +++S+K  +P F  QTK KL + + R
Sbjct: 297 DALVRLVNNYGTECGLIKTEEDKVTREDVREGIVAIISVKHTNPIFEGQTKGKLGNKDAR 356

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V    +D    +L E+P EAK IV+K + A   R A   ARD  RRK V D  SLPGK
Sbjct: 357 MAVNKVFSDSFERFLNENPAEAKTIVQKTIFAKKSRLAGLAARDAARRKTVFDTGSLPGK 416

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS ++ + SEL++VEG+SAGGSAK GR+R  QAILPLRGK++N E+ +  K+ ++ E
Sbjct: 417 LADCSSKNAEISELYIVEGNSAGGSAKMGRNRMTQAILPLRGKVINAEKNQPKKVFANAE 476

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +LITALGTG+G++ F+INKLRYHKIIIMTDADVDGAHIRTLLLTFF+R    LI  GF
Sbjct: 477 ILSLITALGTGVGEE-FNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFRPLIEYGF 535

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN 589
           +YI +PPLY I + K + Y  ++   E+ +   + ++++        G +    L  
Sbjct: 536 IYIAQPPLYKIAQNKFIGYAYNDAQKEEIMQGLNQNQKVTVQRYKGLGEMDPEQLWE 592



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +++QRYKGLGEM+  QLWETT++P  R +L+V+I DA++AD  F+ LMGDEV PRREFI+
Sbjct: 574 VTVQRYKGLGEMDPEQLWETTMDPVNRKMLQVQIEDAARADWAFTTLMGDEVLPRREFIE 633

Query: 794 ENSLPS-ALDI 803
           +N+     +DI
Sbjct: 634 QNAKYVKNIDI 644


>gi|148997114|ref|ZP_01824768.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP11-BS70]
 gi|168492965|ref|ZP_02717108.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC3059-06]
 gi|168575469|ref|ZP_02721405.1| DNA gyrase, B subunit [Streptococcus pneumoniae MLV-016]
 gi|194396954|ref|YP_002037451.1| DNA gyrase subunit B [Streptococcus pneumoniae G54]
 gi|307067411|ref|YP_003876377.1| type IIA topoisomerase subunit B [Streptococcus pneumoniae AP200]
 gi|73916242|gb|AAZ92989.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916254|gb|AAZ92995.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916268|gb|AAZ93002.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|147756814|gb|EDK63854.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP11-BS70]
 gi|183577070|gb|EDT97598.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC3059-06]
 gi|183578470|gb|EDT98998.1| DNA gyrase, B subunit [Streptococcus pneumoniae MLV-016]
 gi|194356621|gb|ACF55069.1| DNA gyrase, B subunit [Streptococcus pneumoniae G54]
 gi|306408948|gb|ADM84375.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus pneumoniae AP200]
          Length = 648

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L + G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|219668703|ref|YP_002459138.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfitobacterium hafniense
           DCB-2]
 gi|219538963|gb|ACL20702.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfitobacterium hafniense
           DCB-2]
          Length = 638

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 274/645 (42%), Positives = 399/645 (61%), Gaps = 19/645 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +++   Y+A+SIQ+L+GL+AV+KRP MYIG T G  GLHH  +E++DNAIDE+  G+
Sbjct: 1   MSMDLK---YNAESIQVLEGLEAVRKRPGMYIGST-GSKGLHHCAWEIIDNAIDEAGAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VTLN DGS TV DNGRG+P D+H  + I A  +   +LHAGGKF+ +SYK SGGL
Sbjct: 57  CTRIEVTLNPDGSLTVLDNGRGVPIDIHPVKQIPAVRLAFEQLHAGGKFDGQSYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS++L + + REG I+ + + + G L + L V       +GT+VTF P  
Sbjct: 117 HGVGASVVNALSTFLVVEVSREGKIFRLEYEDGGKLKSDLKVIKKGIKGSGTKVTFKPDP 176

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--L 236
            IF     F +DTL+ RL EL+FLN  + I L D+R  E R  T   K G+  FV +   
Sbjct: 177 LIFKETTSFKFDTLRSRLMELAFLNPGLTIVLTDQR-KETRSETFQSKNGVIGFVEHLNK 235

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +    P+ + PI  +G +D + ++ A+++ DG  E++  + NNIP  +GGTH SG R+AL
Sbjct: 236 ESDYNPVHKKPIFFKGEKDEVIVECAIQYTDGEDEHLRSYVNNIPTDEGGTHESGFRTAL 295

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T+   +Y +K+    K + S+IGDD ++G T VLS+K+ +P+F  QTK KL ++EV  VV
Sbjct: 296 TKVFNAYGKKNN-IFKKEESLIGDDLKDGLTCVLSVKVREPQFEGQTKTKLSNTEVEGVV 354

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +S  N+G+S + E++P  AK  + + L   + R AA+RA++L ++    ++ +L GKLA 
Sbjct: 355 QSLTNEGISTFFEQNPAVAKDAISRALTTCLERLAAKRAKELKKKARDAEVKALSGKLAA 414

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CSE+D  ++ELFLVEGDSAGGSAK GR R  QAILPLRGK++N  RA+ DK+L ++EI +
Sbjct: 415 CSEKDRNRNELFLVEGDSAGGSAKSGRDRRFQAILPLRGKVINTYRAKMDKVLENEEIRS 474

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +ITA+G GIG++ F+++K  Y ++ IMTDAD+DGAHIR LLLTFF+R M  LI  G +YI
Sbjct: 475 MITAIGAGIGKE-FEVDKSNYARVCIMTDADIDGAHIRCLLLTFFYRYMKPLILGGKVYI 533

Query: 537 IKPPLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
            + PLY +   +GK ++Y  DE  L+D  + +             G ++   L       
Sbjct: 534 AQAPLYKVEKEKGKVVRYAYDEGELKD-ALKELGKSAKLQRYKGLGEMNPEQLWET---- 588

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             ++ + +          +E      +   E        L   + 
Sbjct: 589 -TLNPVNRRMIQVTIDDALEAERKLKILMGEQVDPRREFLMENIV 632



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 5/178 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N    +   V    ++ + +  I     K +    +N   +       +    +    
Sbjct: 455 VINTYRAKMDKVLENEEIRSMITAIGAGIGKEFEVDKSNYARVCIMTDADIDGAHIRCLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I   ++       L  +       +        L D +  +G K   +Q
Sbjct: 515 LTFFYRYMKPLILGGKVY-IAQAPLYKVEKEKGKVVRYAYDEGELKDALKELG-KSAKLQ 572

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMN  QLWETTLNP  R +++V I DA +A+     LMG++V+PRREF+ EN
Sbjct: 573 RYKGLGEMNPEQLWETTLNPVNRRMIQVTIDDALEAERKLKILMGEQVDPRREFLMEN 630


>gi|308190314|ref|YP_003923245.1| DNA topoisomerase (ATP-hydrolyzing) [Mycoplasma fermentans JER]
 gi|319777710|ref|YP_004137361.1| DNA gyrase subunit b [Mycoplasma fermentans M64]
 gi|307625056|gb|ADN69361.1| DNA topoisomerase (ATP-hydrolyzing) [Mycoplasma fermentans JER]
 gi|318038785|gb|ADV34984.1| DNA gyrase subunit B [Mycoplasma fermentans M64]
          Length = 640

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 251/591 (42%), Positives = 368/591 (62%), Gaps = 12/591 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  YDA +I++L+GL+AV+ RP MYIG T G  GLHH+I+E++DN++DE++ G+A+ + +
Sbjct: 2   SKEYDASNIKVLEGLEAVRVRPGMYIG-TTGIRGLHHLIWEIVDNSVDEAMAGFANKVEI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIPT +H + G+S  E ++T LHAGGKF+  SYKVSGGLHGVG S
Sbjct: 61  TITKDGYIDVIDNGRGIPTAVHPKTGLSTVETVLTVLHAGGKFDSDSYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSV 184
           VVN LS   ++ +KR+G ++   F N G +   L +       DTGT + F P   I   
Sbjct: 121 VVNGLSDDFEVWVKRDGKLHYAHFNNGGKILQHLTILNEVDPQDTGTRIKFHPDFSIMDK 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +++   +    +++++LN  ++I + D+R     E     +GGI  +V  L+  +K + 
Sbjct: 181 NEWDKGVIVDHAKQIAYLNKGLRIIVNDERDKSREEYHF--EGGIVDYVKELNTGQKLIH 238

Query: 245 QSPIRIQGS-----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
              I  +G         + +++A+++N+    NV+ + NNI   +GGTH SG   AL R 
Sbjct: 239 PDVIYAEGEYSFQDSPAVQVEVAVQYNERITGNVVSYANNIITVEGGTHESGFYDALVRL 298

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y  +    K ++  V  +D REG  +++S+K  +P F  QTK KL + + R  V   
Sbjct: 299 VNNYGTECGLIKTEEDKVTREDVREGIVAIISVKHTNPIFEGQTKGKLGNKDARMAVNKV 358

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            +D    +L E+P EAK IV+K + A   R A   ARD  RRK V D  SLPGKLADCS 
Sbjct: 359 FSDSFERFLNENPAEAKTIVQKTIFAKKSRLAGLAARDAARRKTVFDTGSLPGKLADCSS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ + SEL++VEG+SAGGSAK GR+R  QAILPLRGK++N E+ +  K+ ++ EI +LIT
Sbjct: 419 KNAEISELYIVEGNSAGGSAKMGRNRMTQAILPLRGKVINAEKNQPKKVFANAEILSLIT 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTG+G++ F+INKLRYHKIIIMTDADVDGAHIRTLLLTFF+R    LI  GF+YI +P
Sbjct: 479 ALGTGVGEE-FNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFRPLIEYGFIYIAQP 537

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN 589
           PLY I + K + Y  ++   E+ +   + ++++        G +    L  
Sbjct: 538 PLYKIAQNKFIGYAYNDAQKEEIMQGLNQNQKVTVQRYKGLGEMDPEQLWE 588



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +++QRYKGLGEM+  QLWETT++P  R +L+V+I DA++AD  F+ LMGDEV PRREFI+
Sbjct: 570 VTVQRYKGLGEMDPEQLWETTMDPVNRKMLQVQIEDAARADWAFTTLMGDEVLPRREFIE 629

Query: 794 ENSLPS-ALDI 803
           +N+     +DI
Sbjct: 630 QNAKYVKNIDI 640


>gi|296167139|ref|ZP_06849546.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897461|gb|EFG77060.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 677

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/656 (41%), Positives = 381/656 (58%), Gaps = 41/656 (6%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+         Y A +I +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ 
Sbjct: 1   MAAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKV 116
           GYA  + V L  DGS  V D+GRGIP  +H   G    +V+MT+LHAGGKF      Y V
Sbjct: 60  GYATKVDVRLLDDGSVEVVDDGRGIPVAMHA-TGAPTVDVVMTQLHAGGKFGGENSGYTV 118

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ L++ IKR+G+ +   +   +    L   G A   TGT + F 
Sbjct: 119 SGGLHGVGVSVVNALSTRLEVTIKRDGHEWFQYYDRAVP-GTLKQ-GEATKKTGTTIRFW 176

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------- 214
              +IF    ++++T+  RL+E++FLN  + I+L D+R                      
Sbjct: 177 ADPEIFETTQYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSDTAEAPKSAE 236

Query: 215 --------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                     + +  T  Y GG+  FV +++R K P+ QS I   G      +++AM+WN
Sbjct: 237 EKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSVIDFDGKGTGHEVEIAMQWN 296

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG 
Sbjct: 297 GGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGL 356

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K + ++
Sbjct: 357 AAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVNKAVSSA 416

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR   
Sbjct: 417 QARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSM 476

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DA
Sbjct: 477 FQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKIVLMADA 535

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDG HI TLLLT  FR M  LI NG +++ +PPLY +   ++       +   D L+  
Sbjct: 536 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRTDPEFAYSDRERDGLLEA 595

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
            L    ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 596 GLKAGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 649



 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 592 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 650

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 651 SILMGEDVDARRSFITRNAKDVRFLDV 677


>gi|125718052|ref|YP_001035185.1| DNA topoisomerase IV subunit B [Streptococcus sanguinis SK36]
 gi|125497969|gb|ABN44635.1| Topoisomerase IV subunit B, putative [Streptococcus sanguinis SK36]
          Length = 649

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/658 (41%), Positives = 395/658 (60%), Gaps = 23/658 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D+R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMSDILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          +       G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  ++   +       +          V   +  +     +   +   L    E
Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 57/73 (78%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   + LMG
Sbjct: 564 LDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRVNVLMG 623

Query: 783 DEVEPRREFIQEN 795
           D+VEPRR++I++N
Sbjct: 624 DKVEPRRKWIEDN 636


>gi|75908731|ref|YP_323027.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413]
 gi|75702456|gb|ABA22132.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413]
          Length = 645

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 295/639 (46%), Positives = 405/639 (63%), Gaps = 14/639 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV+D+GRGIPTD H   G SA E +MT LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  DINADGSVTVTDDGRGIPTDTHSRTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  +++ + R+  ++   +  GI    L+        TGT V+F P S IF+   
Sbjct: 121 VVNALSEVVEVTVWRDKKVHIQRYERGIPVTELIAKPYKEARTGTSVSFKPDSQIFTNSI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+Y TL  RLREL++LN+ V+I+  D R     S  P+  +  YKGGI+ +++Y++R K
Sbjct: 181 EFDYITLSSRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +PL +  I +QG R+N+ I+++++W  D Y +NVL F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QPLHEEIIYVQGERNNVQIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +   K    K+++ ++ G+  REG T+V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 LNTIARKRNKIKENEANLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +LE HP  A  I+ K + A    +AAR AR+L RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLTEYLEFHPGIADAILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI  LIT
Sbjct: 421 RDPSESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG G+  + FD  +LRYH+IIIMTDADVDGAHIRTL+LTFF+R   +LI  GF+YI  P
Sbjct: 481 ALGLGVKGEEFDSTQLRYHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598
           PLY + RG++ +Y   E  L+  +     +           G +    L         ++
Sbjct: 541 PLYKVERGRNYEYCYSERDLQQAIAKFPANANYTIQRFKGLGEMMPEQLWTT-----TMN 595

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
              +       +   E   I  +   +        + + 
Sbjct: 596 PETRTLKRVEIEDAAEADRIFTILMGDRVAPRREFIETY 634



 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
           K E+     +    I++      V    +      F +  +   I    I      +  +
Sbjct: 487 KGEEFDSTQLRYHRIII-MTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACPPLYKV 545

Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
               +         L   I         ++QR+KGLGEM   QLW TT+NP+TR+L RV+
Sbjct: 546 ERGRNYEYCYSERDLQQAIAKFPANANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKRVE 605

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
           I DA++AD +F+ LMGD V PRREFI+          LDI
Sbjct: 606 IEDAAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLDI 645


>gi|222153162|ref|YP_002562339.1| DNA topoisomerase IV subunit B [Streptococcus uberis 0140J]
 gi|222113975|emb|CAR42259.1| topoisomerase IV subunit B [Streptococcus uberis 0140J]
          Length = 650

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/649 (41%), Positives = 400/649 (61%), Gaps = 17/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MAKKEISITNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I VT+N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNEIKVTINKDGSVSVADSGRGMPTGKHA-MGIPTVQVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177
           LHGVG SVVNALS WL++ I R+G++Y+  F + G     L   G+ A + TGT VTF+P
Sbjct: 119 LHGVGSSVVNALSKWLEVEITRDGSVYKQRFEDGGKPVTTLKKIGTAAKSKTGTTVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V++SL D R  EP+     Y+ G++ FV YL+
Sbjct: 179 DDSIFSTTDFKFNTIAERLKESAFLLKDVRMSLTDLRGEEPQVEEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I I+G   +  + +A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T
Sbjct: 239 EDKETLTP-VIYIEGEDQDFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 298 KVMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDGIVSEKLTFFLLENGELATNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F I+ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMVHTIGAGVGAD-FAIDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY +     + + + Y   +  L+D          ++ +     + +      
Sbjct: 537 VYIALPPLYKMAKGKGKTEKVAYAWTDGELDDLRKEFGKGAMLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +D   +  I   I D      +  +     +       +  +  +L  
Sbjct: 597 TMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 100/260 (38%), Gaps = 10/260 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +     N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVHTIGAGVGADFAIDDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-----CNGDKIK 715
           D ++           +   + + +F  +Y R                         +K+ 
Sbjct: 501 DKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVEEGHVYIALPPLYKMAKGKGKTEKVA 558

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                  LD +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ 
Sbjct: 559 YAWTDGELDDLRKEFGKGAMLQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAER 618

Query: 776 LFSRLMGDEVEPRREFIQEN 795
             S LMGD+  PRR++I++N
Sbjct: 619 RVSVLMGDKAAPRRQWIEDN 638


>gi|110003910|emb|CAK98250.1| dna gyrase subunit b protein [Spiroplasma citri]
          Length = 639

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 267/588 (45%), Positives = 386/588 (65%), Gaps = 9/588 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+++SIQIL+GL+A++KRP MYIG T+   GLHH+++E++DN+IDE L  +A+ I + 
Sbjct: 3   DNYNSESIQILEGLEAIRKRPGMYIGATNA-RGLHHLVWEIVDNSIDEVLANFANKIKII 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN D S TV DNGRGIP ++H +  +S  E + T LHAGGKF+  +YK+SGGLHGVG SV
Sbjct: 62  LNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VNALS +LK+ +++    Y M F N G +  P+   GS   +TGT VTFLP   IF    
Sbjct: 122 VNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTS-ETGTTVTFLPDEKIFKETT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            F++ T+Q+R+++L FLN  ++ISL+D +   E + +   +  GI+ +V  L++     +
Sbjct: 181 IFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTIGTPL 240

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI-TSY 303
                ++G  DNI ++  +++ND Y EN+  F NNI   +GGTH  G R A+ R+I   +
Sbjct: 241 NDVFYVEGIEDNIVVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVREINNYF 300

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
              +  +K ++     DD +EG T ++SI+ P+P++  QTK KL +SEV+ +V + V  G
Sbjct: 301 KNINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTKTKLGNSEVKKIVSNIVGKG 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS++L E+P +AK I++K+  +   R  A+RA++ TRRK V+D  SLPGKL+DC  +D K
Sbjct: 361 LSSYLLENPEDAKKIIEKISLSLKARIVAQRAKETTRRKIVMDSFSLPGKLSDCETKDAK 420

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +EL++VEGDSAGGSAK GR+R+ QAILPLRGKILNVE+A+  K+  + EI ++ITALG 
Sbjct: 421 IAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIITALGA 480

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI +D+F+  KLRY K+IIMTDADVDGAHIR LLLTFF+R M  LI NG +YI +PPLY 
Sbjct: 481 GI-KDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLYK 539

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           +     ++YV  +  LE Y        +          G ++   L  
Sbjct: 540 VENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWE 587



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K  ++QRYKGLGEMN  QLWETT++P+ R LL+V + +A +A+ + + LMG+ VEPR++F
Sbjct: 567 KNYTIQRYKGLGEMNPEQLWETTMDPERRLLLKVSVNNAFEANLICNELMGENVEPRKKF 626

Query: 792 IQENSLPS-ALDI 803
           I+EN+     LD+
Sbjct: 627 IRENAKYVKNLDV 639


>gi|306829671|ref|ZP_07462861.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus mitis ATCC
           6249]
 gi|304428757|gb|EFM31847.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus mitis ATCC
           6249]
          Length = 647

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 393/623 (63%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G IY   F N G     L   G+ A + TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYRQRFENGGKPVTTLKKIGTAAKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DASIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDET--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R +
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPI 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V + L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|24379635|ref|NP_721590.1| DNA topoisomerase IV subunit B [Streptococcus mutans UA159]
 gi|24377587|gb|AAN58896.1|AE014957_9 putative DNA topoisomerase IV, subunit B [Streptococcus mutans
           UA159]
          Length = 649

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 269/649 (41%), Positives = 398/649 (61%), Gaps = 17/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKKININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I V +N DGS TV+D+GRG+PT  H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNQIDVIINKDGSITVADHGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F + G     L   G A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGIVYKQRFEDGGKPATTLEKVGKAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  +F Y+T+  RL E +FL  +V ++L D+RS E   +   Y+ G++ FV YL+
Sbjct: 179 DAGIFSTTNFVYNTIAERLNESAFLLKNVTLTLTDERSEEIEHVAFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I  +G   +  +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 239 EDKEILTP-VIYFEGEEADFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V + L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDGLVLEQLTYFLMENGELASNLIRKAIKAREAREAARKARDDSRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+ D ++ ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMDDIIKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G G   F ++   Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGAG-PDFKVDDSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY +++     + ++Y   +  LED          ++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGAKEVVEYAWTDGELEDLRKKFGKGAMLQRYKGLGEMNADQLWET 596

Query: 590 FI--DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +  ++   I   I+D      +  +             +  +  +L  
Sbjct: 597 TMNPENRTLIRVTIEDLARAERRVNVLMGDKVPPRRKWIEDNVKFTLEE 645



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 55/73 (75%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L+ +     KG  +QRYKGLGEMNA QLWETT+NP+ R+L+RV I D ++A+   + LMG
Sbjct: 566 LEDLRKKFGKGAMLQRYKGLGEMNADQLWETTMNPENRTLIRVTIEDLARAERRVNVLMG 625

Query: 783 DEVEPRREFIQEN 795
           D+V PRR++I++N
Sbjct: 626 DKVPPRRKWIEDN 638


>gi|227872280|ref|ZP_03990639.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841892|gb|EEJ52163.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 642

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 255/592 (43%), Positives = 357/592 (60%), Gaps = 13/592 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            SY+ADSI +L+GL+AV++RP MYIG   G  GL+H+IYE++DN++DE L GY   I+VT
Sbjct: 3   KSYNADSITVLEGLEAVRRRPGMYIGSI-GSKGLNHLIYEIVDNSVDEHLAGYCTEISVT 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGSCTV DNGRGIP D HK+ GISA  ++MT LHAGGKF+  SYK SGGLHGVG SV
Sbjct: 62  LHKDGSCTVRDNGRGIPVDRHKK-GISAERIVMTTLHAGGKFDDSSYKTSGGLHGVGSSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV----TGSAGNDTGTEVTFLPSSDIFS 183
           VNALS+++++R+ + G IYE  +  GI    L+           +TGTE TF+P   IF 
Sbjct: 121 VNALSNYMRVRVYQNGKIYEDEYERGIPKTELIDGLLPVVGKTKETGTETTFIPDDSIFE 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F  + L  RL E ++LN ++ +   D+R  E      +   G+ AFV+ L + +  +
Sbjct: 181 KTRFKEEWLMSRLHETAYLNPTLHLHFRDERGEEVVSRDYYEPEGLHAFVAELVKDQSKI 240

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +   I  QG      ++ A ++ D + EN+L F N I  ++GGTH+ GL++   + + SY
Sbjct: 241 VSPIISFQGKSGKTEVECAFQFTDSFEENLLGFCNGIYTQEGGTHIVGLKTKFAQMMNSY 300

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             +    K+   +  G D R G  +VLS+K P+P F  QTK KL S E    V S V + 
Sbjct: 301 ARQLGILKEKDPNFTGADTRNGMVTVLSVKYPEPVFEGQTKTKLASLEAAKDVSSVVGEE 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  + + +    K I+     ++ +R    +A+     K      S  GKLA+C  + P+
Sbjct: 361 LERYFDRNLEIVKAILSCAEKSAKIRKQEEKAKVNLLSKSKYSFDS-NGKLANCISKTPE 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + E+F+VEGDSAGGSAK  R+R  QAILPLRGKILNVE+A  DK+L++ EI T+I A G 
Sbjct: 420 ECEIFIVEGDSAGGSAKTSRNRHTQAILPLRGKILNVEKASMDKVLANAEIKTMINAFGC 479

Query: 484 GIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           G  +   + FDI+KLRYHKII+MTDADVDG+HI TLLLTFF+R MP LI  G +Y+  PP
Sbjct: 480 GFSEGFGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFFYRFMPELIQEGHIYVSMPP 539

Query: 541 LYGI---TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY +    + +  +Y+ DE++L  Y      S          G ++  +L  
Sbjct: 540 LYLLIPENKKEKPRYLYDEKALLAYQKKHGSSGYELKRFKGLGEMNPKELWE 591



 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 137/403 (33%), Gaps = 55/403 (13%)

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGT----------GIGQDSFDINKLRYHK 499
           I+  +GK    E     +   S E   L    G           G+      +      +
Sbjct: 244 IISFQGKSGKTEVECAFQFTDSFEENLLGFCNGIYTQEGGTHIVGLKTKFAQMMNSYARQ 303

Query: 500 IIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           + I+ + D +  GA  R  ++T    + P  +  G        L  +   K +  V  EE
Sbjct: 304 LGILKEKDPNFTGADTRNGMVTVLSVKYPEPVFEGQTK---TKLASLEAAKDVSSVVGEE 360

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP----------- 606
               +  N  + + I    +    I K + +  ++   K                     
Sbjct: 361 LERYFDRNLEIVKAILSCAEKSAKIRKQEEKAKVNLLSKSKYSFDSNGKLANCISKTPEE 420

Query: 607 --------------------NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
                                H +  +   +   + N E      V   +++   +N   
Sbjct: 421 CEIFIVEGDSAGGSAKTSRNRHTQAIL--PLRGKILNVEKASMDKVLANAEIKTMINAFG 478

Query: 647 EKSEKSWHGSINNSDILVKRIAR----GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
               + +    + S +   +I       V    +      F +    + I    I  +  
Sbjct: 479 CGFSEGFGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFFYRFMPELIQEGHIYVSMP 538

Query: 703 TILSLI---CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
            +  LI          +    +LL      G  G  ++R+KGLGEMN  +LWETTLNP+ 
Sbjct: 539 PLYLLIPENKKEKPRYLYDEKALLAYQKKHGSSGYELKRFKGLGEMNPKELWETTLNPEN 598

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           R L RV+I DA  A  + S LMG EV PRREFI  +++ + +D
Sbjct: 599 RVLKRVEIEDAKLASQVTSMLMGTEVAPRREFIFTHAMEAEID 641


>gi|169836509|ref|ZP_02869697.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate
           TM7a]
          Length = 660

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 269/568 (47%), Positives = 371/568 (65%), Gaps = 6/568 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ I + SYD   IQ+L+GL+ V+KRP MYIG T G  G+HH+I E+ DN+IDE++ G+
Sbjct: 1   MSNQINSGSYDGSQIQVLEGLEPVRKRPGMYIGST-GYDGVHHLIKEIADNSIDEAIAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V +  DG  TV+D+GRGIP D H + G+SA E ++T LHAGGKF    YKVS GL
Sbjct: 60  ATRVDVKILKDGGITVTDDGRGIPVDKHPKTGLSALETVLTVLHAGGKFGGGGYKVSSGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ +   + R+G +Y + F  G +  PL   G     TGT +TF P   
Sbjct: 120 HGVGSSVVNALSTKMIAEVVRDGQLYRVEFERGKIVQPLKKIGKTNRVTGTSITFYPDPT 179

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF    DF+Y  + + LR  S+L   V  S+ D+R+ E +      +GGI ++V  L+  
Sbjct: 180 IFKETVDFDYKWVVNYLRHQSYLTKGVFTSVQDERTQERQAFYF--EGGIRSYVKNLNIG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  + ++   ++   ++  +++A+++ND Y E V  F NN+   DGGTHL G ++ALTR 
Sbjct: 238 KDVISENIFYVERPVEDCMVEIALQYNDTYTEMVKPFANNVLTPDGGTHLVGFKAALTRV 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K+ + ++ GDD REG T+V+ +K+PDP+F  QTK KL + E+R  V+  
Sbjct: 298 INDYARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPEMRRYVDQV 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +++  S +LEE+P  AK +V K L A+  R AAR ARD   RKG LD  +LPGKLADCS 
Sbjct: 358 MSEYFSYYLEENPSIAKKVVNKALLAARARRAARAARDNIIRKGALDGLNLPGKLADCSS 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D K+ EL++VEGDSAGGSAK GR    QAILPLRGK+LN ERAR D+ML++ EI +LI 
Sbjct: 418 KDAKECELYIVEGDSAGGSAKSGRDSRTQAILPLRGKVLNTERARLDRMLANNEIVSLIK 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G GIG D+FDI+ LRYH+IIIMTDADVDG+HI TLL+TFFFR M  ++  G +Y+ KP
Sbjct: 478 GMGVGIG-DTFDISGLRYHRIIIMTDADVDGSHIATLLMTFFFRHMKEVVEGGHIYLAKP 536

Query: 540 PLYGIT-RGKSLQYVKDEESLEDYLINQ 566
           PLY +   G    Y   +E  ++ +   
Sbjct: 537 PLYLLKAAGNKKWYAYSDEEKDNMISEL 564



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 10/127 (7%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRY 739
            + + G+K    +S+  ++N ++ L      +  KI  P    D+       G++ +QRY
Sbjct: 540 LLKAAGNKKWYAYSDEEKDNMISELIEKRRSNGAKI-NPD---DSPMKQA--GLNDIQRY 593

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799
           KGLGEM+A QLWETT+ P+ R L++VK+ DA +AD +FS+LMGDEV  R+ FIQ  +  +
Sbjct: 594 KGLGEMDADQLWETTMKPENRVLIQVKVEDAERADAIFSKLMGDEVSLRKSFIQTRAKDA 653

Query: 800 A---LDI 803
               LD+
Sbjct: 654 NFDELDV 660


>gi|323351521|ref|ZP_08087175.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           VMC66]
 gi|322122007|gb|EFX93733.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           VMC66]
          Length = 649

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/658 (41%), Positives = 395/658 (60%), Gaps = 23/658 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D+R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          +       G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  ++   +       +          V   +  +     +   +   L    E
Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|89894290|ref|YP_517777.1| hypothetical protein DSY1544 [Desulfitobacterium hafniense Y51]
 gi|89333738|dbj|BAE83333.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 638

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 276/645 (42%), Positives = 401/645 (62%), Gaps = 19/645 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS +++   Y+A+SIQ+L+GL+AV+KRP MYIG T G  GLHH  +E++DNAIDE+  G+
Sbjct: 1   MSMDLK---YNAESIQVLEGLEAVRKRPGMYIGST-GSKGLHHCAWEIIDNAIDEAGAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VTLN DGS TV DNGRG+P D+H  + I A  +   +LHAGGKF+ +SYK SGGL
Sbjct: 57  CTRIEVTLNPDGSLTVLDNGRGVPIDIHPVKQIPAVRLAFEQLHAGGKFDGQSYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS++L + + REG I+ + + + G L + L V       +GT+VTF P  
Sbjct: 117 HGVGASVVNALSTFLVVEVSREGKIFRLEYEDGGKLKSDLKVIKKGIKGSGTKVTFKPDP 176

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--L 236
            IF     F +DTL+ RL EL+FLN  + I L D+R  E R  T   K G+  FV +   
Sbjct: 177 LIFKETTSFKFDTLRSRLMELAFLNPGLTIVLTDQR-KETRSETFQSKNGVIGFVEHLNK 235

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +    P+ + PI  +G +D+I ++ A+++NDG  E++  + NNIP  +GGTH SG R+AL
Sbjct: 236 ESDYNPVHKKPIFFKGEKDDIIVECAIQYNDGEDEHLRSYVNNIPTDEGGTHESGFRTAL 295

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T+   +Y +K+    K + S+IGDD ++G T VLS+K+ +P+F  QTK KL ++EV  VV
Sbjct: 296 TKVFNAYGKKNN-IFKKEESLIGDDLKDGLTCVLSVKVREPQFEGQTKTKLSNTEVEGVV 354

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +S  N+G+S + E++P  AK  + + L   + R AA+RA++L ++    ++ +L GKLA 
Sbjct: 355 QSLTNEGISTFFEQNPAVAKDAISRALTTCLERLAAKRAKELKKKARDAEVKALSGKLAA 414

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CSE+D  ++ELFLVEGDSAGGSAK GR R  QAILPLRGK++N  RA+ DK+L ++EI +
Sbjct: 415 CSEKDRNRNELFLVEGDSAGGSAKSGRDRRFQAILPLRGKVINTYRAKMDKVLENEEIRS 474

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +ITA+G GIG++ F+++K  Y ++ IMTDAD+DGAHIR LLLTFF+R M  LI  G +YI
Sbjct: 475 MITAIGAGIGKE-FEVDKSNYARVCIMTDADIDGAHIRCLLLTFFYRYMKPLILGGKVYI 533

Query: 537 IKPPLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
            + PLY +   +GK ++Y  DE  L+D  + +             G ++   L       
Sbjct: 534 AQAPLYKVEKEKGKVVRYAYDEGELKD-ALKELGKSAKLQRYKGLGEMNPEQLWET---- 588

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             ++ + +          +E      +   E        L   + 
Sbjct: 589 -TLNPVNRRMIQVTIDDALEAERKLKILMGEQVDPRREFLMENIV 632



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 5/178 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N    +   V    ++ + +  I     K +    +N   +       +    +    
Sbjct: 455 VINTYRAKMDKVLENEEIRSMITAIGAGIGKEFEVDKSNYARVCIMTDADIDGAHIRCLL 514

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I   ++       L  +       +        L D +  +G K   +Q
Sbjct: 515 LTFFYRYMKPLILGGKVY-IAQAPLYKVEKEKGKVVRYAYDEGELKDALKELG-KSAKLQ 572

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMN  QLWETTLNP  R +++V I DA +A+     LMG++V+PRREF+ EN
Sbjct: 573 RYKGLGEMNPEQLWETTLNPVNRRMIQVTIDDALEAERKLKILMGEQVDPRREFLMEN 630


>gi|153813002|ref|ZP_01965670.1| hypothetical protein RUMOBE_03409 [Ruminococcus obeum ATCC 29174]
 gi|149830949|gb|EDM86039.1| hypothetical protein RUMOBE_03409 [Ruminococcus obeum ATCC 29174]
          Length = 660

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 249/623 (39%), Positives = 357/623 (57%), Gaps = 23/623 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  +YDA SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY   I 
Sbjct: 22  KKETYDAGSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCSQIH 80

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L  DGSCTV+DNGRGIP D+H++ G+SA  ++ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 81  VVLEKDGSCTVTDNGRGIPVDMHEK-GMSAERLVFTTLHAGGKFDNSAYKTSGGLHGVGS 139

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS++L +++ R+G ++   +  GI    L        G    +TGT + FLP  +
Sbjct: 140 SVVNALSTYLDIKVSRDGYVHHDHYERGIPTIELENGLLPKLGRTK-ETGTCINFLPDPE 198

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+   ++ RL E ++LN  + I   D R  EP +       GI  ++  ++   
Sbjct: 199 IFEKTRFSATDVKSRLHETAYLNPELTIIFEDLRGTEPVKEEYHEPEGIVGYIRDMNHST 258

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L   P+ ++G  D I +++A ++ + + ENVL F NNI   +GGTHL+G ++  T  +
Sbjct: 259 EALH-EPVYLKGEADGIQVEVAFQYTNEFRENVLGFCNNIYNAEGGTHLTGFKTTFTTVM 317

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y  +    K    +  G D R G T+V+SIK P PRF  QTK KL + +        +
Sbjct: 318 NTYAREIGILKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQDAAKATGKVL 377

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  + + +    K+I+     A+ +R    RA+     K      S  GKLA+C ++
Sbjct: 378 GEQLVLYFDRNLETLKMILSCAEKAAKIRKTEERAKTNLLTKQKYSFDS-NGKLANCEKK 436

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 437 DPSQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKVLANAEIKTMINA 496

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI+KLRY KI+IM DADVDGAHI TLLLT F+R MP LI+ G +YI 
Sbjct: 497 FGCGFSEGYGNDFDISKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 556

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY    +    +Y+ D+++LE Y                 G +    L         
Sbjct: 557 MPPLYKAMPKKGPEEYLYDDKALEKYRKTHKPGSFTLQRYKGLGEMDAEQLW-------- 608

Query: 597 IDKLIKDFYPNHDKTFIEQAVIS 619
            +  +        +  IE A ++
Sbjct: 609 -ETTLNPETRRMKRVEIEDARLA 630



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 51/69 (73%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTLNP+TR + RV+I DA  A  +   LMG EV PR+ FI E
Sbjct: 592 TLQRYKGLGEMDAEQLWETTLNPETRRMKRVEIEDARLASSVTEVLMGSEVPPRKAFIYE 651

Query: 795 NSLPSALDI 803
           ++  + LD+
Sbjct: 652 HAADAELDV 660


>gi|325689651|gb|EGD31655.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK115]
          Length = 649

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 275/658 (41%), Positives = 396/658 (60%), Gaps = 23/658 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D+R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTDEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGSD-FTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          +       G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  ++   +       +          V   +  +     +   +   L    E
Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|307708545|ref|ZP_07645010.1| DNA topoisomerase IV, B subunit [Streptococcus mitis NCTC 12261]
 gi|307615461|gb|EFN94669.1| DNA topoisomerase IV, B subunit [Streptococcus mitis NCTC 12261]
          Length = 647

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G IY+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL D+R+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDERTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQLGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQLGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|224541292|ref|ZP_03681831.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525796|gb|EEF94901.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM
           15897]
          Length = 641

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/590 (47%), Positives = 386/590 (65%), Gaps = 6/590 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L G+ + 
Sbjct: 2   EQKVEHYDESDIQVLEGLEAVRKRPGMYIGTTSA-RGLHHLVWEIVDNSIDEALAGFCNK 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L       V DNGRG+PT ++ + G +  E I T LHAGGKF    YKVSGGLHGV
Sbjct: 61  IRVVLLPGDVVKVIDNGRGMPTGMNVKTGKNTIETIFTVLHAGGKFGGGGYKVSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGND-TGTEVTFLPSSDI 181
           G SVVNALS WL++ + REG+IY   F NG      L V G    + TGT V F    +I
Sbjct: 121 GASVVNALSEWLEVYVHREGHIYYQRFENGGTPVGSLKVVGDCEQEETGTTVVFKADPEI 180

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F+    ++Y  L  RLREL+FLN  +++ L D+R    +     Y+GG+  +V++L+++K
Sbjct: 181 FTETTVYDYGVLSQRLRELAFLNKGLKLVLEDERLDPAKVDEYHYEGGLREYVAFLNKNK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL    I  + + ++IS+++AM++NDGY  N+  F NNI   +GGTH  G R ALTR I
Sbjct: 241 TPLHDHIIDCEDTMNDISVEIAMQYNDGYQPNIYSFCNNINTHEGGTHEEGFRLALTRVI 300

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y +     K    S+ GDDCREG T+++S+K PDP++  QTK KL ++EVR +V + +
Sbjct: 301 NNYAKSHNFLKDKDESLSGDDCREGLTAIVSVKHPDPQYEGQTKTKLGNAEVRKIVSTIL 360

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P  AKII+ KV  AS  R AA+RAR++TRRK  LD+++LPGKLADCS +
Sbjct: 361 ANALDKFLLENPDTAKIIMDKVTLASKARMAAKRAREMTRRKTALDVSNLPGKLADCSSK 420

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + E+F+VEGDSAGGSAK GR R+ QAILPLRGKILNVE+AR +++L + EI ++ITA
Sbjct: 421 DPSECEIFIVEGDSAGGSAKSGRDRKIQAILPLRGKILNVEKARLERILGNAEIRSMITA 480

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTGIG D FDINKLRYHKI+IMTDADVDG HIR L+LTF +R +  LI NG++Y  +PP
Sbjct: 481 FGTGIG-DEFDINKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENGYVYAAQPP 539

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           LY +  GK   Y+  +  L+        + +         G ++   L  
Sbjct: 540 LYLLRHGKDDHYLYSDYELDKLKEELGPNAKYTIQRYKGLGEMNPEQLWE 589



 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 10/130 (7%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI----GRKGI 734
            + +F  +Y +  I +  +      +  L    D   +      LD +        +   
Sbjct: 515 LMLTFLYRYLKPLIENGYVYAAQPPLYLLRHGKDDHYLYSDYE-LDKLKEELGPNAK--Y 571

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMN  QLWETT+NP+ R L R+++ DA QAD LF  LMG+ VEPRR+FI+E
Sbjct: 572 TIQRYKGLGEMNPEQLWETTMNPENRVLNRIQLDDAMQADQLFDMLMGERVEPRRDFIRE 631

Query: 795 NSLPS-ALDI 803
           N+     LDI
Sbjct: 632 NAKYVENLDI 641


>gi|227543723|ref|ZP_03973772.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300908788|ref|ZP_07126251.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           reuteri SD2112]
 gi|154705554|gb|ABS84203.1| DNA gyrase B subunit [Lactobacillus reuteri]
 gi|227186291|gb|EEI66362.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300894195|gb|EFK87553.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           reuteri SD2112]
          Length = 649

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 292/600 (48%), Positives = 396/600 (66%), Gaps = 14/600 (2%)

Query: 1   MSDNIQNS-------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           MS+  Q          YDA  IQ+LKGLDAV+KRP MYIG T  + GLHH+++E++DN I
Sbjct: 1   MSNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGI 59

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE+L G+ D I V +N D S TV DNGRGIP D  KE G SA E + T LHAGGKF    
Sbjct: 60  DEALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQKETGKSALETVFTVLHAGGKFGGGG 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGT 171
           YKVSGGLHGVG SVVNALS+ L +++ R+G  Y M F +G + + + V   G    + GT
Sbjct: 120 YKVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGT 179

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F P  +IF     +N  TL  RLREL+FLN  ++I++ D R  +       Y+GGI 
Sbjct: 180 TVHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLREIDHERKEFHYEGGIR 239

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            +V YL+  +  L   PI ++G  ++I++++++++ D Y  N+L FTNNI   +GGTH +
Sbjct: 240 HYVEYLNEDQNVLFDPPIYVEGKENDITVEVSLQYTDSYRSNLLTFTNNIHTYEGGTHET 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G + ALTR I  Y  K+   K ++ ++ GDD REG T+V+SIK PDP+F  QTK KL +S
Sbjct: 300 GFKMALTRVINDYGHKAGILKSNE-TLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNS 358

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           + R+  +       + +L EHP EA+ I++K   AS  R AA+RAR++TR+K  L+I++L
Sbjct: 359 DARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNL 418

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLAD + +DP+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+
Sbjct: 419 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLA 478

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           + EI +L TALGTG G D FDI K  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I 
Sbjct: 479 NDEIRSLFTALGTGFG-DDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIT 537

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +G++YI +PPLY + +GK ++Y+  +E LE  + +   S + +       G +    L  
Sbjct: 538 HGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 597



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R LLRVK+ DA QAD +F  LMG +V PRR+FI++N
Sbjct: 581 IQRYKGLGEMDAEQLWETTMDPENRHLLRVKLDDAEQADKIFPMLMGTKVGPRRDFIEQN 640

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 641 AKFVENLD 648


>gi|315150486|gb|EFT94502.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0012]
          Length = 685

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/664 (40%), Positives = 388/664 (58%), Gaps = 16/664 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+  D S  V+D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+G  Y   F + G     L   G      GT VTFLP  
Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  +F+Y+ L  RLRE +FL   V+I+L D+R  EP+E    Y+ GI+ FV+YL+  
Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G+++ I ++LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+ 
Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTK KL +   R+VV+
Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V + +  +L+E+   ++ +++K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY +++G   + V       +Y        E+        ++ +      ++   
Sbjct: 536 IALPPLYKVSKGTGKKSVI------EYAWTDGELSEVIDKVGKGYMLQRYKGLGEMNAEQ 589

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
             +  +        +  I+ A  +         +        +   + F  E+       
Sbjct: 590 LWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDR 649

Query: 656 SINN 659
           S  +
Sbjct: 650 SEED 653



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 378 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 498 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 558 WTDGELSEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 618 TTLMGDKVEPRRKWIEQH 635


>gi|118615924|ref|YP_904256.1| DNA gyrase subunit B [Mycobacterium ulcerans Agy99]
 gi|118568034|gb|ABL02785.1| DNA gyrase (subunit B) GyrB [Mycobacterium ulcerans Agy99]
          Length = 692

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 270/652 (41%), Positives = 381/652 (58%), Gaps = 39/652 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A +I +L+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GYA 
Sbjct: 20  KKKAQDEYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGYAT 78

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120
            + V L  DGS  V+DNGRGIP  +H   G    +V+MT+LHAGGKF      Y VSGGL
Sbjct: 79  QVNVRLLDDGSVEVADNGRGIPVAMHA-TGAPTVDVVMTQLHAGGKFGGENSGYNVSGGL 137

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ L++ IKR+G  +   +        L   G A   TGT + F    D
Sbjct: 138 HGVGVSVVNALSTRLEVDIKRDGYEWSQFYDRAQP-GTLKQ-GEATKKTGTAIRFWADPD 195

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------- 214
           IF   +++++T+  RL+E++FLN  + I+L D+R                          
Sbjct: 196 IFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTPDEVVDDVVSDTAEAPKSAQEKAA 255

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                 + +  T  Y GG+  FV +++R K P+ QS +  +G      +++AM+WN GY 
Sbjct: 256 ESTAPHKVKSRTFHYPGGLVDFVKHINRTKSPIQQSIVDFEGKGSGHEVEIAMQWNGGYS 315

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+
Sbjct: 316 ESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAVI 375

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+++ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK IV K + ++  R 
Sbjct: 376 SVRVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTIVNKAVSSAQARL 435

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAI
Sbjct: 436 AARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAI 495

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD++KLRYHKI++M DADVDG
Sbjct: 496 LPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLSKLRYHKIVLMADADVDG 554

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            HI TLLLT  FR M  LI NG +++ +PPLY +   ++       +   D L+   L  
Sbjct: 555 QHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRTEPEFAYSDRERDGLLEAGLKA 614

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
             ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 615 GKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 664



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 607 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 665

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 666 SILMGEDVDARRSFITRNAKDVRFLDV 692


>gi|322517179|ref|ZP_08070062.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           vestibularis ATCC 49124]
 gi|322124238|gb|EFX95754.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           vestibularis ATCC 49124]
          Length = 649

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 275/623 (44%), Positives = 392/623 (62%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D+I VTLN DGS +VSD+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDVIAVTLNNDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G++Y   F N G     L   G A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF ++T+  RL+E +FL  +V ++L D R  E       Y+ G++ FVSYL+
Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I I G +    +++A+++NDGY +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 239 EDKETLTP-VIYIDGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++V+S+ +P+   +F  QTK+KL S   R +
Sbjct: 298 KALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +V+K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVG-VDFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590
           +YI  PPLY +++GK  + V +    +  L           I       G ++ + L   
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAILQRYKGLGEMNADQLWET 596

Query: 591 I---DDALKIDKLIKDFYPNHDK 610
               +    I   I D      +
Sbjct: 597 TMDPETRTLIRVTIDDLARAERR 619



 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       ++    N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGVDFNLDDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K ++    
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEVVEYA 560

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     +G  +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGRGAILQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 621 SVLMGDKPAPRRQWIEDN 638


>gi|73916278|gb|AAZ93007.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916280|gb|AAZ93008.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916282|gb|AAZ93009.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916284|gb|AAZ93010.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L + G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 RETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QL ETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLRETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|222151258|ref|YP_002560414.1| topoisomerase IV subunit B [Macrococcus caseolyticus JCSC5402]
 gi|222120383|dbj|BAH17718.1| topoisomerase IV subunit B [Macrococcus caseolyticus JCSC5402]
          Length = 671

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 262/594 (44%), Positives = 378/594 (63%), Gaps = 14/594 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N+ Y+ +SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE+LDN+IDE+L G+ + I
Sbjct: 1   MANNQYNDESIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEILDNSIDEALNGHGNEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V LN D S TV+DNGRG+PT LH + G    EVI T LHAGGKF Q  YK +GGLHGVG
Sbjct: 60  NVVLNADDSVTVTDNGRGMPTGLH-KTGKPTPEVIFTVLHAGGKFGQGGYKTTGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSSWL++ I   G I++  F + G+    L   G +   TGT VTF P   IF 
Sbjct: 119 ASVVNALSSWLEVTIHNNGKIFKQRFQDGGVPVTTLEEIGKSK-KTGTTVTFKPDPSIFK 177

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FN+DTL  RLRE +FL ++++I++ D R+ E R    +Y+ G++ FV++++  K+ 
Sbjct: 178 QTVKFNFDTLSERLRESAFLLNNLKITISDLRNNEERHEVFYYEDGLKDFVNFVNEGKET 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L +      G   +I +++A ++ND Y E +L F NN+  KDGGTH  G+++A+TR    
Sbjct: 238 LHEVAK-FSGKSHDIEVEVAFQFNDQYSETILSFVNNVRTKDGGTHEVGMKTAITRVFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K   +++ G+D REG T+++S+K+P+   +F  QTK KL +SE RS V+  +
Sbjct: 297 YARKIGELKAKDKNLDGNDIREGMTAIISVKIPENLLQFEGQTKSKLGTSEARSAVDGVL 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ L  + EE+ + ++ +VKK + A+  RDAAR+AR+     +K       L GKL    
Sbjct: 357 SEQLPFYFEENGVLSQKLVKKAVKAAQARDAARKAREEARNGKKNKRKETLLSGKLTPAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  ++EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+A+ + +L ++EI T+I
Sbjct: 417 SKDTSRNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDILKNEEISTII 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G D F++    Y KIIIMTDAD DGAHI+ LLLTFFF+ M  LI  G +YI  
Sbjct: 477 HTIGAGVGND-FEVKDANYDKIIIMTDADTDGAHIQVLLLTFFFKYMKPLIDAGKVYIAL 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDY---LINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY +++GK    V +    +D    +  +     I       G ++ + L +
Sbjct: 536 PPLYKVSKGKGKNEVIEYAWTDDELKGVQKKVGKGFILQRYKGLGEMNADQLWD 589



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +       +D               + +    S  +          ++   ++     
Sbjct: 375 VKKAVKAAQARDAARKAREEARNGKKNKRKETLLSGKLTPAQSKDTSRNELYLVEGDSAG 434

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    +++  ++ I       +     N 
Sbjct: 435 GSAKLGRDRKFQAILPLRGKVINTEKAKLEDILKNEEISTIIHTIGAGVGNDFEVKDANY 494

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717
           D ++           +      F F      I + ++      +  +       + I+  
Sbjct: 495 DKIIIMTDADTDGAHIQVLLLTFFFKYMKPLIDAGKVYIALPPLYKVSKGKGKNEVIEYA 554

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLW+TT+NP+TR+L+RV+I D  ++    
Sbjct: 555 WTDDELKGVQKKVGKGFILQRYKGLGEMNADQLWDTTMNPETRTLIRVEIDDELRSAKRV 614

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+VEPRR++I+ +
Sbjct: 615 STLMGDKVEPRRDWIERH 632


>gi|29376174|ref|NP_815328.1| DNA topoisomerase IV subunit B [Enterococcus faecalis V583]
 gi|227518804|ref|ZP_03948853.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX0104]
 gi|229545771|ref|ZP_04434496.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX1322]
 gi|229549961|ref|ZP_04438686.1| DNA topoisomerase IV subunit B [Enterococcus faecalis ATCC 29200]
 gi|256853176|ref|ZP_05558546.1| topoisomerase IV B subunit [Enterococcus faecalis T8]
 gi|257422560|ref|ZP_05599550.1| topoisomerase IV subunit B [Enterococcus faecalis X98]
 gi|293382943|ref|ZP_06628861.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis R712]
 gi|293389568|ref|ZP_06634025.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis S613]
 gi|294781701|ref|ZP_06747036.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis PC1.1]
 gi|300861193|ref|ZP_07107280.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307270968|ref|ZP_07552251.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4248]
 gi|307273174|ref|ZP_07554420.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0855]
 gi|307274908|ref|ZP_07556071.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2134]
 gi|307289156|ref|ZP_07569112.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0109]
 gi|307291946|ref|ZP_07571815.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0411]
 gi|312899465|ref|ZP_07758795.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0470]
 gi|312903358|ref|ZP_07762538.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0635]
 gi|312907586|ref|ZP_07766577.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 512]
 gi|312910204|ref|ZP_07769051.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 516]
 gi|312951548|ref|ZP_07770444.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0102]
 gi|15982570|dbj|BAB69480.1| topoisomerase IV B subunit [Enterococcus faecalis]
 gi|29343637|gb|AAO81398.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis V583]
 gi|227073717|gb|EEI11680.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX0104]
 gi|229304874|gb|EEN70870.1| DNA topoisomerase IV subunit B [Enterococcus faecalis ATCC 29200]
 gi|229309083|gb|EEN75070.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX1322]
 gi|256711635|gb|EEU26673.1| topoisomerase IV B subunit [Enterococcus faecalis T8]
 gi|257164384|gb|EEU94344.1| topoisomerase IV subunit B [Enterococcus faecalis X98]
 gi|291079608|gb|EFE16972.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis R712]
 gi|291081185|gb|EFE18148.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis S613]
 gi|294451253|gb|EFG19720.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis PC1.1]
 gi|300850232|gb|EFK77982.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306496944|gb|EFM66492.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0411]
 gi|306499865|gb|EFM69226.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0109]
 gi|306508356|gb|EFM77463.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2134]
 gi|306510159|gb|EFM79183.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0855]
 gi|306512466|gb|EFM81115.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4248]
 gi|310626614|gb|EFQ09897.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 512]
 gi|310630514|gb|EFQ13797.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0102]
 gi|310633234|gb|EFQ16517.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0635]
 gi|311289477|gb|EFQ68033.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 516]
 gi|311293335|gb|EFQ71891.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0470]
 gi|315029334|gb|EFT41266.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4000]
 gi|315034019|gb|EFT45951.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0017]
 gi|315037028|gb|EFT48960.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0027]
 gi|315147315|gb|EFT91331.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4244]
 gi|315152429|gb|EFT96445.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0031]
 gi|315155702|gb|EFT99718.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0043]
 gi|315158127|gb|EFU02144.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0312]
 gi|315164065|gb|EFU08082.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1302]
 gi|315168985|gb|EFU13002.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1341]
 gi|315169781|gb|EFU13798.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1342]
 gi|315172254|gb|EFU16271.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1346]
 gi|315575816|gb|EFU88007.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0309B]
 gi|315577656|gb|EFU89847.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0630]
 gi|315580468|gb|EFU92659.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0309A]
 gi|323480780|gb|ADX80219.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis 62]
 gi|327535184|gb|AEA94018.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus faecalis
           OG1RF]
          Length = 685

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/664 (40%), Positives = 388/664 (58%), Gaps = 16/664 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+  D S  V+D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+G  Y   F + G     L   G      GT VTFLP  
Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  +F+Y+ L  RLRE +FL   V+I+L D+R  EP+E    Y+ GI+ FV+YL+  
Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G+++ I ++LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+ 
Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTK KL +   R+VV+
Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V + +  +L+E+   ++ +++K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY +++G   + V       +Y        E+        ++ +      ++   
Sbjct: 536 IALPPLYKVSKGTGKKSVI------EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQ 589

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
             +  +        +  I+ A  +         +        +   + F  E+       
Sbjct: 590 LWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDR 649

Query: 656 SINN 659
           S  +
Sbjct: 650 SEED 653



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 378 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 498 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 558 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 618 TTLMGDKVEPRRKWIEQH 635


>gi|227529858|ref|ZP_03959907.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350227|gb|EEJ40518.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 648

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 288/599 (48%), Positives = 397/599 (66%), Gaps = 13/599 (2%)

Query: 1   MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MSD  +       S YDA  IQ+LKGLDAV+KRP MYIG T  + GLHH+++E++DN ID
Sbjct: 1   MSDEQKETKAELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+ + I V +  D S +V+DNGRGIP D  KE G  A E + T LHAGGKF    Y
Sbjct: 60  EALAGFCNEINVIVEPDNSISVTDNGRGIPVDTQKETGKPALETVFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTE 172
           KVSGGLHGVG SVVNALS+ L +++ R+G  Y M F +G +   + V       +  GT 
Sbjct: 120 KVSGGLHGVGASVVNALSTELDVKVSRQGKRYYMDFDHGHVKTSMKVIDENVPEDIHGTT 179

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F P  +IF     +N  TL +RLREL+FLN  ++I++ DKR  E       Y+GGI  
Sbjct: 180 VHFKPDPEIFRETTTYNIKTLTNRLRELAFLNKGLKITIEDKRDKESERQEFHYEGGIRH 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           +V +L+  K  L + PI ++G  + I++++++++ D Y  ++L FTNNI   +GGTH +G
Sbjct: 240 YVDFLNEGKTTLFEPPIYVEGKENGITVEVSLQYTDSYRSDLLTFTNNIHTYEGGTHETG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            + ALTR I  Y  K+   K ++ ++ GDD REG T+V+SIK PDP+F  QTK KL +S+
Sbjct: 300 FKMALTRVINDYGHKAGVLKSNE-TLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNSD 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            R+  +       + +L EHP EA+ I++K   AS  R AA+RAR++TR+K  L+I++LP
Sbjct: 359 ARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLAD + +DP  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++
Sbjct: 419 GKLADNTSKDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLAN 478

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            EI +L TALGTG G+D FDI K  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I +
Sbjct: 479 DEIRSLFTALGTGFGED-FDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMITH 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           G++YI +PPLY + +GK ++Y++ +E L+  + +   S + +       G +    L  
Sbjct: 538 GYVYIAQPPLYQVRQGKFVKYIESDEELDRVVNSLQPSPKPVIQRYKGLGEMDAEQLWE 596



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R LLRV + DA  A+++F  LMG++V PRREFI++N
Sbjct: 580 IQRYKGLGEMDAEQLWETTMDPEKRHLLRVNLDDAKAAEEIFPMLMGNKVTPRREFIEKN 639

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 640 AKFVENLD 647


>gi|86738729|ref|YP_479129.1| DNA gyrase subunit B [Frankia sp. CcI3]
 gi|86565591|gb|ABD09400.1| DNA gyrase subunit B [Frankia sp. CcI3]
          Length = 679

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/589 (47%), Positives = 374/589 (63%), Gaps = 10/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +  +YDA SI++L+GLDAV+KRP MYIG T GE GLHH++YEV+DNA+DE+L GY D
Sbjct: 31  EGTRRVAYDASSIKVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEALAGYCD 89

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            ITVTL  DG   V+DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHG
Sbjct: 90  TITVTLLADGGVRVTDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHG 149

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L + I  +G+++   ++    D PL  TG+      + VTF     IF
Sbjct: 150 VGVSVVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTGTS-VTFWADPTIF 208

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              ++ Y+TL  RL+E++FLN  + I+L+D+R  E   +T  Y  G+  FV +L+  K  
Sbjct: 209 ETTEYKYETLSRRLQEMAFLNKGLSITLVDERDEERVAVTYKYANGLVDFVGHLNATKDT 268

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + +S I ++     I  +LAM+WN GY E+V  F N I   +GGTH  G R+ALT  + +
Sbjct: 269 IHRSVISLESKGVGIEAELAMQWNGGYTESVYTFANTINTHEGGTHEEGFRAALTSAVNA 328

Query: 303 YVEKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           Y +     K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +  
Sbjct: 329 YAKDQNLLKPVKAGAKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKF 388

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+      L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLA
Sbjct: 389 VQEMCYSALKDWFEVNRTEARAIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLA 448

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC   DP++ EL++VEGDSAGGSAK GR  + QAILPLRGKILNVE+AR D++L + E+ 
Sbjct: 449 DCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQ 508

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALGTGI  D FDI KLRYHKI++M DADVDG HIRTLLLT  FR M  L+  G ++
Sbjct: 509 ALIQALGTGI-HDDFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGHVF 567

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           + +PPLY I  G+        +   D L+ + +    +L  D+      
Sbjct: 568 LAQPPLYKIKWGREDWEYAYSDRERDGLVARGVESGRKLPKDAIQRFKG 616



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS LMG++V+ RR FIQ N
Sbjct: 611 IQRFKGLGEMNATELWDTTMDPDRRILLQVTLDDAAVADELFSVLMGEDVDARRSFIQRN 670

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 671 AKDVRFLDI 679


>gi|315145098|gb|EFT89114.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2141]
 gi|315160386|gb|EFU04403.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0645]
          Length = 685

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/664 (40%), Positives = 388/664 (58%), Gaps = 16/664 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+  D S  V+D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+G  Y   F + G     L   G      GT VTFLP  
Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  +F+Y+ L  RLRE +FL   V+I+L D+R  EP+E    Y+ GI+ FV+YL+  
Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G+++ I ++LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+ 
Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTK KL +   R+VV+
Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V + +  +L+E+   ++ +++K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY +++G   + V       +Y        E+        ++ +      ++   
Sbjct: 536 IALPPLYKVSKGTGKKSVI------EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQ 589

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
             +  +        +  I+ A  +         +        +   + F  E+       
Sbjct: 590 LWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDR 649

Query: 656 SINN 659
           S  +
Sbjct: 650 SEED 653



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 378 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 498 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 558 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 618 TTLMGDKVEPRRKWIEQH 635


>gi|297158796|gb|ADI08508.1| DNA gyrase subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 680

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 285/646 (44%), Positives = 391/646 (60%), Gaps = 12/646 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I VT+
Sbjct: 36  SYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADTIEVTI 94

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V DNGRGIP DLH  E   A EV++T LHAGGKF    Y VSGGLHGVGVSVV
Sbjct: 95  LPDGGVRVVDNGRGIPVDLHPVEKKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVV 154

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ + + +KR+G  +   +  G+   PL        +TGT VTF    D+F   +++
Sbjct: 155 NALSTKVSVEVKRDGYRWTQDYKLGVPTAPLAK-NEQVTETGTTVTFWADPDVFETTEYS 213

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY-LDRHKK 241
           ++TL  R +E++FLN  + ISL D+R        +P  +T  Y+GGI  FV Y   R  +
Sbjct: 214 FETLSRRFQEMAFLNKGLSISLTDERAAHVDEEGKPLSVTYCYEGGIVDFVQYLNSRKGE 273

Query: 242 PLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            +  + I  +       +S+++AM+WN  Y E V  F N I   +GGTH  G R+ALT  
Sbjct: 274 LVHPTIIGFEAEDKERMLSVEIAMQWNTQYTEGVYSFANTIHTHEGGTHEEGFRAALTYL 333

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK KL ++E ++ V+  
Sbjct: 334 INKYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKI 393

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRKG+L+ ASLPGKLADC  
Sbjct: 394 VHEHLADWLDRNPNEAADIIRKSIQAATARVAARKARDLTRRKGLLETASLPGKLADCQS 453

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L + E+  LI+
Sbjct: 454 NDPAKCEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARVDKILQNNEVQALIS 513

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTG+ +D FDI+KLRYHKII+M DADVDG HI TLLLTF FR M  L+  G +++ +P
Sbjct: 514 AFGTGVHED-FDISKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRP 572

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  G+        +   D LI     +   +  DS          N  +  +    
Sbjct: 573 PLYKIKWGRDDFEYAYSDRERDALIQAGREQGKRIKEDSVQRFKGLGEMNAEELRVTTMD 632

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
           +              QA          D E   S   + A  + F+
Sbjct: 633 VDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 678



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +   GR      K  S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 594 DALIQAGREQGKRIKEDSVQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLF 653

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 654 SVLMGEDVEARRSFIQRNAKDVRFLDI 680


>gi|228909407|ref|ZP_04073232.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 200]
 gi|228850184|gb|EEM95013.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 200]
          Length = 654

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 267/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N GI    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGIPATTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415
           + V++ L+ +LEE+P  A ++V+K + A+  R+AAR+AR+  R       +  +L GKL 
Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G + FD+  + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + ++Y   +E L+           ++ +     + +       +
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   I D      +                ++ +   +  +     N +  ++
Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651

Query: 650 EKS 652
           E  
Sbjct: 652 EVE 654



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631


>gi|315027216|gb|EFT39148.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2137]
          Length = 685

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/664 (40%), Positives = 388/664 (58%), Gaps = 16/664 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+  D S  V+D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+G  Y   F + G     L   G      GT VTFLP  
Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  +F+Y+ L  RLRE +FL   V+I+L D+R  EP+E    Y+ GI+ FV+YL+  
Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G+++ I ++LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+ 
Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTK KL +   R+VV+
Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V + +  +L+E+   ++ +++K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY +++G   + V       +Y        E+        ++ +      ++   
Sbjct: 536 IALPPLYKVSKGTGKKSVI------EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQ 589

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
             +  +        +  I+ A  +         +        +   + F  E+       
Sbjct: 590 LWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDR 649

Query: 656 SINN 659
           S  +
Sbjct: 650 SEED 653



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 378 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 498 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 558 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 618 TTLMGDKVEPRRKWIEQH 635


>gi|148985841|ref|ZP_01818935.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP3-BS71]
 gi|73916286|gb|AAZ93011.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916318|gb|AAZ93027.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916322|gb|AAZ93029.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916344|gb|AAZ93040.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|147921987|gb|EDK73111.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP3-BS71]
 gi|301799821|emb|CBW32390.1| DNA gyrase subunit B [Streptococcus pneumoniae OXC141]
          Length = 648

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 276/626 (44%), Positives = 404/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L + G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVAELEIVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG  +V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLAAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|41406103|ref|NP_958939.1| DNA gyrase subunit B [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|118463778|ref|YP_879308.1| DNA gyrase subunit B [Mycobacterium avium 104]
 gi|254773058|ref|ZP_05214574.1| DNA gyrase subunit B [Mycobacterium avium subsp. avium ATCC 25291]
 gi|13431552|sp|Q9L7L3|GYRB_MYCPA RecName: Full=DNA gyrase subunit B
 gi|6969273|gb|AAF33694.1| putative gyrB [Mycobacterium avium subsp. paratuberculosis]
 gi|41394451|gb|AAS02322.1| GyrB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165065|gb|ABK65962.1| DNA gyrase, B subunit [Mycobacterium avium 104]
          Length = 677

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 274/656 (41%), Positives = 384/656 (58%), Gaps = 41/656 (6%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+         Y A +I +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ 
Sbjct: 1   MAAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKV 116
           GYAD + V +  DGS  V+DNGRGIP  +H   G    +V+MT+LHAGGKF      Y V
Sbjct: 60  GYADRVDVRILDDGSVEVADNGRGIPVAMHA-TGAPTVDVVMTQLHAGGKFGGENSGYNV 118

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ L++ I R+G  +   + + +    L   G A   TGT + F 
Sbjct: 119 SGGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVP-GTLKQ-GEATKRTGTTIRFW 176

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------- 214
              DIF   +++++T+  RL+E++FLN  + I+L D+R                      
Sbjct: 177 ADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKSAQ 236

Query: 215 --------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                     + +  T  Y GG+  FV +++R K P+ QS I   G      +++AM+WN
Sbjct: 237 EKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGHEVEIAMQWN 296

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG 
Sbjct: 297 GGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGL 356

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK+IV K + ++
Sbjct: 357 AAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAVSSA 416

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR   
Sbjct: 417 QARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSM 476

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DA
Sbjct: 477 FQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKIVLMADA 535

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDG HI TLLLT  FR M  LI +G +++ +PPLY +   +S       +   D L+  
Sbjct: 536 DVDGQHISTLLLTLLFRFMRPLIEHGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 595

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
            L    ++  D    I +      +D     +  +        +  ++ A  +   
Sbjct: 596 GLKAGKKINKDDG--IQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDDAAAADEL 649



 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 592 LLEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDDAAAADELF 650

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 651 SILMGEDVDARRSFITRNAKDVRFLDV 677


>gi|73916252|gb|AAZ92994.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 404/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L + G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVIADLEIVGDT-DKTGTTVHFTP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++        ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGGDQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGGDQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|324992846|gb|EGC24766.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK405]
 gi|324994514|gb|EGC26427.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK678]
 gi|327462153|gb|EGF08480.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK1]
          Length = 647

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/623 (43%), Positives = 390/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGSD-FTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594

Query: 590 FI--DDALKIDKLIKDFYPNHDK 610
            +  D    I   I+D      +
Sbjct: 595 TMNPDTRTLIRVTIEDLARAERR 617



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|327438158|dbj|BAK14523.1| type IIA topoisomerase, B subunit [Solibacillus silvestris StLB046]
          Length = 641

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 285/593 (48%), Positives = 398/593 (67%), Gaps = 8/593 (1%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+  DN    SYDAD IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L 
Sbjct: 1   MALEDNKVQQSYDADQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   ITVT+  D    V DNGRGIP D+ ++ G+ A EVIMT LHAGGKF    YKVSG
Sbjct: 60  GYCSGITVTIEQDNWIRVEDNGRGIPVDIQEKMGMPAVEVIMTVLHAGGKFGGGGYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG SVVNALSS   +++ R+G I+E+ F  G     L V G   + TGT   F   
Sbjct: 120 GLHGVGASVVNALSSQTIVQVHRDGKIHEIIFERGHTVQQLTVIGETDH-TGTTTRFKAD 178

Query: 179 SDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+IF     + YD L  R+REL++LN  + +++ D+R+ + R  T  ++GGI  +V +++
Sbjct: 179 SEIFKETTVYEYDILATRIRELAYLNRGISLTIADERTGQERSETFHFEGGIREYVEHIN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K+ +      + G ++ I++++AM++N G+  N++ F NNI   +GGTH SG ++ALT
Sbjct: 239 ENKEAIHAPID-VLGEKEGITVEIAMQYNAGFSSNIMSFANNINTYEGGTHESGFKTALT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y  KS   K+   ++ G+D REG T+++SIK P+P+F  QTK KL +SEV  +  
Sbjct: 298 RVINDYARKSNLIKESDANLTGEDVREGLTAIVSIKHPEPQFEGQTKTKLGNSEVSQITN 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           +  +DG   +L E+P  A+ +++K   A+  R AA++AR+ TRRK  L+++SLPGKLADC
Sbjct: 358 ALFSDGFERFLLENPSVARQVIEKGTMAARARVAAKKAREFTRRKSALEVSSLPGKLADC 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S  +P +SE+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++LS+ EI  +
Sbjct: 418 SSTNPAESEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAM 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITA GTGIG++ F++ K RYHKI+IMTDADVDGAHIR LLLTFFFR M  LI  G++Y  
Sbjct: 478 ITAFGTGIGEE-FNLEKARYHKIVIMTDADVDGAHIRVLLLTFFFRFMRPLIEAGYVYAA 536

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589
           KPPLY + +GK ++Y   ++ LED L     L +         G ++   L +
Sbjct: 537 KPPLYQVKQGKHVEYCYSDQELEDILNRLPKLPKPNVQRYKGLGEMNATQLWD 589



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 59/70 (84%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMNA+QLW+TT++P+ R+L+RV++ DA +AD +F  LMGDEV PRR+FI+E
Sbjct: 572 NVQRYKGLGEMNATQLWDTTMDPEHRTLIRVELDDAIEADKIFDHLMGDEVAPRRDFIEE 631

Query: 795 NSLPS-ALDI 803
           N++    LDI
Sbjct: 632 NAVYVQDLDI 641


>gi|116627477|ref|YP_820096.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMD-9]
 gi|116100754|gb|ABJ65900.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMD-9]
 gi|312277994|gb|ADQ62651.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus ND03]
          Length = 649

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/652 (42%), Positives = 399/652 (61%), Gaps = 17/652 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D+I VTLN DGS +VSD+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDVIAVTLNKDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G++Y   F N G     L   G A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF ++T+  RL+E +FL  +V ++L D R  E       Y+ G++ FVSYL+
Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I I G + +  ++LA+++NDGY +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 239 EDKETLTP-VIYIDGDQQDFHLELALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           +    Y  K+   K+  +++ G D REG ++V+S+ +P+   +F  QTK+KL S   R +
Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+  V++ L+ +L E+   A  +V+K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590
           +YI  PPLY +++GK  + V +    +  L           +       G ++ + L   
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWET 596

Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
               +    I   I D      +  +     +       +  +  +L    A
Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEETTA 648



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       ++    N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K ++    
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEVVEYA 560

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     +G  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 621 SVLMGDKAAPRRQWIEDN 638


>gi|157692485|ref|YP_001486947.1| DNA topoisomerase IV subunit B [Bacillus pumilus SAFR-032]
 gi|157681243|gb|ABV62387.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Bacillus pumilus
           SAFR-032]
          Length = 655

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 266/658 (40%), Positives = 393/658 (59%), Gaps = 22/658 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             Q   Y+ DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L G+ D 
Sbjct: 3   KKQQVDYNDDSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEVLAGHGDH 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ D S +V D GRG+PT +H + G    E+I+T LHAGGKF Q  YK SGGLHGV
Sbjct: 62  IVVKIHKDNSISVQDKGRGMPTGMH-KLGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I+R+G IY   F N G     L   G     TGT + F P   +F
Sbjct: 121 GASVVNALSEWLTVTIERDGYIYHQRFENGGKPVTSLEKVGKTK-KTGTLIHFKPDRSMF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           SV  +N+DTL  RLRE +FL   ++I LID+R     + T +Y+ GIEAFV+     +K 
Sbjct: 180 SVTTYNFDTLSERLRESAFLLKGLKIELIDERHD--VQETFYYETGIEAFVA-YLNEEKD 236

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++   +  +G   +I +D A ++NDGY EN+L F NN+  KDGGTH SG ++A+TR    
Sbjct: 237 VLSEVVSFEGEHQSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V++ +
Sbjct: 297 YARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAVI 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
           ++ L+ +LEE+   A ++V+K + A   R+AARRAR+  R  +K     A+L GKL    
Sbjct: 357 SEKLAYFLEENRETATLLVRKAIKAQQAREAARRAREEARSGKKRKKSEATLSGKLTPAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P ++EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+   +  ++EI T+I
Sbjct: 417 SRNPARNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTII 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G G+G   F++  + Y KI+IMTDAD DGAHI+ LLLTFF+R M  LI +G ++I  
Sbjct: 477 HAIGGGVG-VDFNVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIAL 535

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           PPLY ++    + + ++Y   +E ++D L        I+ +    G ++ + L       
Sbjct: 536 PPLYKVSKGSGKKEVIEYAWSDEEMDDVLKKVGKGYTIQRY-KGLGEMNADQLWET---- 590

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
             ++   +                      +  +     +   +A  L+  +   E  
Sbjct: 591 -TMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILENE 647



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 105/265 (39%), Gaps = 6/265 (2%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +     + +    Q  ++               +      S  +          ++   
Sbjct: 368 RETATLLVRKAIKAQQAREAARRAREEARSGKKRKKSEATLSGKLTPAQSRNPARNELYL 427

Query: 597 IDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
           ++           +    QAV+     V N E  +  ++    ++   ++ I       +
Sbjct: 428 VEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGVDF 487

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           +    N D +V           +      F +      I   ++      +  +     K
Sbjct: 488 NVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGK 547

Query: 714 IKI---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
            ++         +D +     KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA
Sbjct: 548 KEVIEYAWSDEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDA 607

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++ +   + LMGD+VEPRR++I++N
Sbjct: 608 ARVERRVTTLMGDKVEPRRKWIEKN 632


>gi|327460298|gb|EGF06635.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK1057]
 gi|328946252|gb|EGG40396.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK1087]
          Length = 647

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/623 (43%), Positives = 389/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594

Query: 590 FI--DDALKIDKLIKDFYPNHDK 610
            +  D    I   I+D      +
Sbjct: 595 TMNPDTRTLIRVTIEDLARAERR 617



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|325696560|gb|EGD38450.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK160]
          Length = 647

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/623 (43%), Positives = 389/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYTDNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594

Query: 590 FI--DDALKIDKLIKDFYPNHDK 610
            +  D    I   I+D      +
Sbjct: 595 TMNPDTRTLIRVTIEDLARAERR 617



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|171779306|ref|ZP_02920270.1| hypothetical protein STRINF_01147 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281923|gb|EDT47354.1| hypothetical protein STRINF_01147 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 649

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 270/623 (43%), Positives = 387/623 (62%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I V LN DGS TV D GRG+PT  H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGTQIDVILNQDGSVTVKDQGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS WL++ I R+G +Y+  F N G     L   G+A    +GT VTF+P
Sbjct: 119 LHGVGSSVVNALSRWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTMVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL  +V ++L D R  E   +   Y+ G++ FV YL+
Sbjct: 179 DDTIFSTTDFKFNTIAERLKESAFLLKNVTLTLTDNRPEEAEHLEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L      + G      +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 239 EDKETLTPVIW-VTGEDQGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  KS   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDSIVSEKLTFFLLENGEVASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   +L ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FKVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  LE+         +++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I D      +
Sbjct: 597 TMNPETRTLIRVTIDDLARAERR 619



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +    +N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTAKAKMSDILKNEEINTMIYTIGAGVGADFKVENSNY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEQVEYA 560

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+VEPRR++I++N
Sbjct: 621 SVLMGDKVEPRRKWIEDN 638


>gi|73661314|ref|YP_300095.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493829|dbj|BAE17150.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 641

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 291/641 (45%), Positives = 414/641 (64%), Gaps = 5/641 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD      Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSDVNNTEDYGAGQIQVLEGLEAVRKRPGMYIGSTS-EKGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD I V +  D    V+DNGRGIP  + ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  ADTIEVVIEKDNWIKVTDNGRGIPVGIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG SVVNALS  L++ + ++  +Y   +  G+    L V      ++TGT + F   S
Sbjct: 120 HGVGSSVVNALSEDLEVYVYKDRKVYHQGYKKGVPQFDLKVIEETDDDNTGTVIRFKADS 179

Query: 180 DIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     ++Y+TLQ R REL+FLN  + I+L D+R  E RE T  Y+GGI+++V  L+ 
Sbjct: 180 EIFTETTTYHYETLQQRTRELAFLNKGISITLRDERGEEVREDTYHYEGGIKSYVEMLNE 239

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+PL + PI +  ++D+I +++A+++N G+  N+L + NNI   +GGTH  G + AL+R
Sbjct: 240 NKQPLHEEPIYVHQTKDDIEVEIALQYNKGFATNLLTYANNIHTYEGGTHEEGFKRALSR 299

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY   S   K+DK  + G+D REG T+++SIK  DP+F  QTK KL +SEVR +V+ 
Sbjct: 300 VLNSYGLNSKIIKEDKERLSGEDTREGLTAIVSIKHGDPQFEGQTKTKLGNSEVRQIVDK 359

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L EHP   +I+V+K + AS  R AA++AR++TRRK  L+I+SLPGKLADCS
Sbjct: 360 LFSELFERFLYEHPQVGRIVVEKGIMASHARLAAKKAREVTRRKSALEISSLPGKLADCS 419

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SE+F+VEGDSAGGS K GR  E QAILPLRGKILNVE+AR D++L++ EI ++I
Sbjct: 420 SKDPSRSEIFIVEGDSAGGSTKSGRDSETQAILPLRGKILNVEKARLDRILNNNEIRSMI 479

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG + FD++K RYHKI++MTDADVDGAHIRTLLLTFF+R M  L+  G++YI +
Sbjct: 480 TAFGTGIGGE-FDLSKARYHKIVLMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQ 538

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKI 597
           PPL+ +T+GK   YV +E  LE        +           G ++ + L     +    
Sbjct: 539 PPLFKLTQGKQKYYVFNERELEKLKAELEPTPKWSISRYKGLGEMNADQLWETTMNPENR 598

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
             L        +   + + ++  V         + ++ + L
Sbjct: 599 AMLQVSLDDAIEADQVFEMLMGDVVENRRQFIEDNAVYANL 639



 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 3/102 (2%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTR 760
            +  L     K  +      L+ + +        S+ RYKGLGEMNA QLWETT+NP+ R
Sbjct: 540 PLFKLTQGKQKYYVFNERE-LEKLKAELEPTPKWSISRYKGLGEMNADQLWETTMNPENR 598

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           ++L+V + DA +AD +F  LMGD VE RR+FI++N++ + LD
Sbjct: 599 AMLQVSLDDAIEADQVFEMLMGDVVENRRQFIEDNAVYANLD 640


>gi|307706405|ref|ZP_07643215.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK321]
 gi|307618192|gb|EFN97349.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK321]
          Length = 647

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 279/623 (44%), Positives = 393/623 (63%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G IY+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGMVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +    + 
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWKT 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLW+TT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWKTTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|325687511|gb|EGD29532.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK72]
          Length = 649

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/658 (41%), Positives = 394/658 (59%), Gaps = 23/658 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSEKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          +       G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGALLQRYKGLGEMNADQLWE 593

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  ++   +       +          V   +  +     +   +   L    E
Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646



 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGALLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|332360829|gb|EGJ38635.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK49]
          Length = 647

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/623 (43%), Positives = 389/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSEKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594

Query: 590 FI--DDALKIDKLIKDFYPNHDK 610
            +  D    I   I+D      +
Sbjct: 595 TMNPDTRTLIRVTIEDLARAERR 617



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|227508132|ref|ZP_03938181.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227523343|ref|ZP_03953392.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290]
 gi|227089449|gb|EEI24761.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290]
 gi|227192361|gb|EEI72428.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 647

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 288/597 (48%), Positives = 402/597 (67%), Gaps = 10/597 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D  +      + YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE
Sbjct: 1   MADQKETKKELANEYDASQIQVLEGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIVDNGIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  ITVT+  D S TV+D+GRGIP D+ K+ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATKITVTVEKDNSITVTDDGRGIPVDIQKKTGKPALETVYTILHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVT 174
           VSGGLHGVG SVVNALS  L + + R G +Y M F  G +  P+ V    + +  GT+V 
Sbjct: 120 VSGGLHGVGASVVNALSEELDVAVTRNGKVYYMDFSRGHVTTPMKVIDHVSDDLHGTKVH 179

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           FLP  DIF     F+   L  RLREL+FLN  ++I + D R  +P E    Y+GGI  +V
Sbjct: 180 FLPDPDIFRETTTFDIKVLTARLRELAFLNKGLRIIVRDMRPEKPTEQDFLYEGGIRHYV 239

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YLD+ K+ L++ PI ++G  + I++++A+ +++ YH  ++ FTNNI   +GGTH  G +
Sbjct: 240 EYLDKDKETLLKEPIYVEGMDNGITVEVAIDYSEDYHSTLMTFTNNIHTYEGGTHEEGFK 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR I  Y  K+   K ++ ++ G+D REG T+V+SIK PDP+F  QTK KL +S+ R
Sbjct: 300 RALTRVINDYARKNNLLKDNEANLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDAR 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           +V +   +D  S +L E+P  A+ I+ + L AS  R AA+RAR++TRRK  L+I+SLPGK
Sbjct: 360 TVTDRIFSDHFSKFLMENPKLARKIIDRGLLASKARSAAKRAREVTRRKSGLEISSLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LAD + +DPK SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNVE+A  D++L+++E
Sbjct: 420 LADNTSKDPKISELFIVEGDSAGGSAKQGRARLTQAILPIRGKILNVEKASMDRILANEE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +L TA+GTG G D FD++K+ YHK+IIMTDADVDGAHI+TLLLT  +R M  LI  G+
Sbjct: 480 IRSLFTAMGTGFG-DDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGY 538

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +Y+ +PPLY + +GK  +Y+  ++ L  +L     S + +       G +    L +
Sbjct: 539 VYVAQPPLYQVRQGKMQRYIDSDDDLNQFLGTLQPSPKPVIQRYKGLGEMDAEQLWD 595



 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 58/69 (84%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLW+TT+NP+ R LLRV+ +DA++A+ +FS LMGD+VEPRREFI++N
Sbjct: 579 IQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEANHVFSMLMGDKVEPRREFIEDN 638

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 639 ATFVENLDI 647


>gi|327474459|gb|EGF19865.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK408]
 gi|332360276|gb|EGJ38089.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK355]
          Length = 649

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/623 (43%), Positives = 390/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|322388043|ref|ZP_08061649.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus infantis
           ATCC 700779]
 gi|321141064|gb|EFX36563.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus infantis
           ATCC 700779]
          Length = 649

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 276/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y   F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYRQRFENGGKPVTTLEKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y  G++ FVSYL+
Sbjct: 179 DASIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYVNGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V + L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|325694452|gb|EGD36361.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK150]
 gi|327489834|gb|EGF21624.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK1058]
          Length = 649

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 274/658 (41%), Positives = 395/658 (60%), Gaps = 23/658 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGSD-FTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          +       G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  ++   +       +          V   +  +     +   +   L    E
Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|322375407|ref|ZP_08049920.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C300]
 gi|321279670|gb|EFX56710.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C300]
          Length = 649

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 393/623 (63%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   I++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEENGFQIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R +
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPI 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V + L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|291525298|emb|CBK90885.1| DNA topoisomerase IV subunit B [Eubacterium rectale DSM 17629]
          Length = 640

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 251/621 (40%), Positives = 353/621 (56%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  +YD  SI IL+GL+AV+KRP MYIG      GL+H+IYE++DN++DE L G  D I 
Sbjct: 3   KKQTYDEKSIAILEGLEAVRKRPGMYIGSV-TTKGLNHLIYEIVDNSVDEHLAGACDTIR 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  +GSCTV DNGRGIP  +H + G+SAA V+ + LHAGGKF+   YK SGGLHGVG 
Sbjct: 62  VTLEKNGSCTVEDNGRGIPVGMHAK-GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS+++ + I R+G I+   +  G+    L        G     TGT + FLP  +
Sbjct: 121 SVVNALSTYMDVEISRDGFIHHDRYEKGVPVVELENGLLPTLGKTK-KTGTRINFLPDPE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + +++RL+E ++LN  + I   DKR      I      GI  FV  L+++ 
Sbjct: 180 IFEKTRFKEEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIEYHEPEGIIGFVKDLNKNI 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I   G  +NI +++A ++   +HEN+L F NNI   +GG H++G ++A T  I
Sbjct: 240 EKLH-DVIYFTGESENIKVEVAFQYTSEFHENILGFCNNIYNSEGGAHITGFKTAFTGII 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY  +    K    +  G D R G T+V+S+K PDPRF  QTK KL + +         
Sbjct: 299 NSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQDANRATAKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ND +  + +++    K ++     A+ +R A  +A+     K      S  GKLA+C  R
Sbjct: 359 NDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDS-NGKLANCESR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K E+F+VEGDSAGGSAK  R+R  QAI+P+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT FFR MP LI  G +Y+ 
Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPELILEGHVYVA 537

Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY  I      +Y+ D+  L+ Y    +    ++ +     + +       ++ A +
Sbjct: 538 MPPLYKAIPSKGEEKYLYDDAELDKYRKTHTGKFTLQRYKGLGEMDADQLWDTTLNPATR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           + K I+              +
Sbjct: 598 MLKRIEIEDGRLANDVTSLLM 618



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 53/69 (76%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLW+TTLNP TR L R++I D   A+D+ S LMG +V PR+EFI E
Sbjct: 572 TLQRYKGLGEMDADQLWDTTLNPATRMLKRIEIEDGRLANDVTSLLMGSDVPPRKEFIYE 631

Query: 795 NSLPSALDI 803
           ++  + LD+
Sbjct: 632 HAHDAELDV 640


>gi|227511156|ref|ZP_03941205.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577]
 gi|227085638|gb|EEI20950.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577]
          Length = 647

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 288/597 (48%), Positives = 402/597 (67%), Gaps = 10/597 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D  +      + YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE
Sbjct: 1   MADQKETKKELANEYDASQIQVLEGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIVDNGIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  ITVT+  D S TV+D+GRGIP D+ K+ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFATKITVTVEKDNSITVTDDGRGIPVDIQKKTGKPALETVYTILHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVT 174
           VSGGLHGVG SVVNALS  L + + R G +Y M F  G +  P+ V    + +  GT+V 
Sbjct: 120 VSGGLHGVGASVVNALSEELDVAVTRNGKVYYMDFSRGHVTTPMKVIDHVSDDLHGTKVH 179

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           FLP  DIF     F+   L  RLREL+FLN  ++I + D R  +P E    Y+GGI  +V
Sbjct: 180 FLPDPDIFRETTTFDIKVLTARLRELAFLNKELRIIVRDMRPEKPTEQDFLYEGGIRHYV 239

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YLD+ K+ L++ PI ++G  + I++++A+ +++ YH  ++ FTNNI   +GGTH  G +
Sbjct: 240 EYLDKDKETLLKEPIYVEGMDNGITVEVAIDYSEDYHSTLMTFTNNIHTYEGGTHEEGFK 299

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR I  Y  K+   K ++ ++ G+D REG T+V+SIK PDP+F  QTK KL +S+ R
Sbjct: 300 RALTRVINDYARKNNLLKDNEANLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDAR 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           +V +   +D  S +L E+P  A+ I+ + L AS  R AA+RAR++TRRK  L+I+SLPGK
Sbjct: 360 TVTDRIFSDHFSKFLMENPKLARKIIDRGLLASKARSAAKRAREVTRRKSGLEISSLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LAD + +DPK SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNVE+A  D++L+++E
Sbjct: 420 LADNTSKDPKISELFIVEGDSAGGSAKQGRARLTQAILPIRGKILNVEKASMDRILANEE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +L TA+GTG G D FD++K+ YHK+IIMTDADVDGAHI+TLLLT  +R M  LI  G+
Sbjct: 480 IRSLFTAMGTGFG-DDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGY 538

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +Y+ +PPLY + +GK  +Y+  ++ L  +L     S + +       G +    L +
Sbjct: 539 VYVAQPPLYQVRQGKMQRYIDSDDDLNQFLGTLQPSPKPVIQRYKGLGEMDAEQLWD 595



 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 58/69 (84%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLW+TT+NP+ R LLRV+ +DA++A+ +FS LMGD+VEPRREFI++N
Sbjct: 579 IQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEANHVFSMLMGDKVEPRREFIEDN 638

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 639 ATFVENLDI 647


>gi|270292568|ref|ZP_06198779.1| topoisomerase IV, subunit B [Streptococcus sp. M143]
 gi|270278547|gb|EFA24393.1| topoisomerase IV, subunit B [Streptococcus sp. M143]
          Length = 647

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVEDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|306825057|ref|ZP_07458399.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432493|gb|EFM35467.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 649

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 275/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVEDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E  E     + G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIEYHY--ENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|149010561|ref|ZP_01831932.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP19-BS75]
 gi|147765042|gb|EDK71971.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP19-BS75]
 gi|332077223|gb|EGI87685.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA17545]
          Length = 648

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G++  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFSSHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F+P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPKIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|333025714|ref|ZP_08453778.1| putative DNA gyrase subunit B [Streptomyces sp. Tu6071]
 gi|332745566|gb|EGJ76007.1| putative DNA gyrase subunit B [Streptomyces sp. Tu6071]
          Length = 765

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 286/653 (43%), Positives = 393/653 (60%), Gaps = 27/653 (4%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + +I   SYDA++I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+A
Sbjct: 101 TSSIAEPSYDANAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHA 159

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLH
Sbjct: 160 DTIDVTILSDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 219

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+ +++ +K +G+++   +  G+   PL   G A  + GT VTF    D+
Sbjct: 220 GVGVSVVNALSTRVEVEVKTDGHVWTQQYERGVPIAPLHK-GEATQEHGTSVTFWADGDV 278

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREIT 222
           F   +++++TL  R +E++FLN  + I L D+R                    PE R +T
Sbjct: 279 FETTEYSFETLARRFQEMAFLNKGLTIKLTDERDSAKATAGADSAEVVDAEEAPEARTVT 338

Query: 223 MFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNN 279
             Y+GGI  FV Y   R  + +  S I ++       +S+++AM+WN GY E V  F N 
Sbjct: 339 YHYEGGIVDFVKYLNSRKGEVIHPSVIDVEAEDKEKLLSVEVAMQWNAGYTEGVYSFANT 398

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R ALT  +  Y       ++   ++ GDD REG T+++S+K+ +P+F
Sbjct: 399 IHTHEGGTHEEGFRGALTTIVNKYARDKKLLREKDGNLTGDDIREGLTAIISVKLGEPQF 458

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++E R+ V+  V + L+ W + +P EA  I++K + A+  R AAR+ARDLT
Sbjct: 459 EGQTKTKLGNTEARTFVQKIVYERLADWFDRNPNEASDIIRKGISAATARVAARKARDLT 518

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR    QAILP+RGKILN
Sbjct: 519 RRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILN 578

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR DK+L +QEI  LI+A G G+  D FDI KLRYHKII+M DADVDG HI TLLLT
Sbjct: 579 VEKARVDKILHNQEIQALISAFGAGV-HDDFDIEKLRYHKIILMADADVDGQHINTLLLT 637

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           F FR M  L+  G +Y+ +PPLY I  GK        +   D LI         L   + 
Sbjct: 638 FLFRFMRPLVEAGHVYLSRPPLYKIKWGKDDVDYAYSDRERDALITLGRENGKRLREGAV 697

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                  L     + L++  + +D       T  + A    +F+    +++  
Sbjct: 698 QRFKG--LGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADDLFSVLMGEDVEA 748



 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 6/89 (6%)

Query: 720 CSLLDTI-FSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              L T+    G++   G ++QR+KGLGEM+A +L  TT++ D R L +V + DA+QADD
Sbjct: 678 RDALITLGRENGKRLREG-AVQRFKGLGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADD 736

Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           LFS LMG++VE RR+FIQ N+     LDI
Sbjct: 737 LFSVLMGEDVEARRQFIQRNAKDVRFLDI 765


>gi|327469984|gb|EGF15448.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK330]
          Length = 649

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/658 (41%), Positives = 394/658 (59%), Gaps = 23/658 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FV+YL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVTYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          +       G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  ++   +       +          V   +  +     +   +   L    E
Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 57/73 (78%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   + LMG
Sbjct: 564 LDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRVNVLMG 623

Query: 783 DEVEPRREFIQEN 795
           D+VEPRR++I++N
Sbjct: 624 DKVEPRRKWIEDN 636


>gi|269314035|gb|ACZ36919.1| DNA gyrase B [Mycobacterium chelonae]
          Length = 651

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 266/643 (41%), Positives = 379/643 (58%), Gaps = 37/643 (5%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA  + VT+ 
Sbjct: 1   YSADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATTVEVTML 59

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DG   V D+GRGIP  +H   GI   +V+MT+LHAGGKF+  SY VSGGLHGVG+SVVN
Sbjct: 60  EDGGIQVKDDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS+ ++L I R+G+ ++  +   +    L   G+A   TGT V F    +IF    +++
Sbjct: 119 ALSTKVELEILRDGHEWQQVYTASVP-GTLQQ-GAATKKTGTTVRFWADPEIFETTTYDF 176

Query: 190 DTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEPR 219
           +T+  RL+E +FLN  + I L D+R                                + +
Sbjct: 177 ETVARRLQEQAFLNKGLTIKLTDERVSNADVTDEVVSDTAEAPKTAEEQAAESAAPHKVK 236

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y  G+  FV +++R K  +  + +   G  +   +++AM+WN GY E+V  F N 
Sbjct: 237 NRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVEIAMQWNAGYSESVHTFANT 296

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +V+S+K+ +P+F
Sbjct: 297 INTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDTNLTGDDIREGLAAVISVKVGEPQF 356

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L  W + +P +AK +V K + ++  R AAR+AR+L 
Sbjct: 357 EGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKARELV 416

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 417 RRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIIN 476

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG HI TLLLT
Sbjct: 477 VEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTLLLT 535

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             FR M  L+ +G +++ +PPLY +   +S       +   D L+   L    ++  D  
Sbjct: 536 LLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGKKINKDDG 595

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
             I +      +D     +  +        +  ++ A  +   
Sbjct: 596 --IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 636



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 5/74 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           L++     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 579 LMEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 637

Query: 778 SRLMGDEVEPRREF 791
           S LMG++VE RR F
Sbjct: 638 SILMGEDVEARRSF 651


>gi|291529243|emb|CBK94829.1| DNA topoisomerase IV subunit B [Eubacterium rectale M104/1]
          Length = 640

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 251/621 (40%), Positives = 353/621 (56%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  +YD  SI IL+GL+AV+KRP MYIG      GL+H+IYE++DN++DE L G  D I 
Sbjct: 3   KKQTYDEKSIAILEGLEAVRKRPGMYIGSV-TTKGLNHLIYEIVDNSVDEHLAGACDTIR 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  +GSCTV DNGRGIP  +H + G+SAA V+ + LHAGGKF+   YK SGGLHGVG 
Sbjct: 62  VTLEKNGSCTVEDNGRGIPVGMHAK-GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS+++ + I R+G I+   +  G+    L        G     TGT + FLP  +
Sbjct: 121 SVVNALSTYMDVEISRDGYIHHDRYEKGVPVVELENGLLPTLGKTK-KTGTRINFLPDPE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + +++RL+E ++LN  + I   DKR      I      GI  FV  LD++ 
Sbjct: 180 IFEKTRFKEEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIEYHEPEGIVGFVKDLDKNI 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I   G  ++I +++A ++   +HEN+L F NNI   +GG H++G ++A T  I
Sbjct: 240 EKLH-DVIYFTGESEDIKVEVAFQYTSEFHENILGFCNNIYNSEGGAHITGFKTAFTGII 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY  +    K    +  G D R G T+V+S+K PDPRF  QTK KL + +         
Sbjct: 299 NSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQDANRATAKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ND +  + +++    K ++     A+ +R A  +A+     K      S  GKLA+C  R
Sbjct: 359 NDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDS-NGKLANCESR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K E+F+VEGDSAGGSAK  R+R  QAI+P+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT FFR MP LI  G +Y+ 
Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPELILEGHVYVA 537

Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY  I      +Y+ D+  L+ Y    +    ++ +     + +       ++ A +
Sbjct: 538 MPPLYKAIPSKGEEKYLYDDAELDKYRKTHTGKFTLQRYKGLGEMDADQLWDTTLNPATR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           + K I+              +
Sbjct: 598 MLKRIEIEDGRLANDVTSLLM 618



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 53/69 (76%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLW+TTLNP TR L R++I D   A+D+ S LMG +V PR+EFI E
Sbjct: 572 TLQRYKGLGEMDADQLWDTTLNPATRMLKRIEIEDGRLANDVTSLLMGSDVPPRKEFIYE 631

Query: 795 NSLPSALDI 803
           ++  + LD+
Sbjct: 632 HAHDAELDV 640


>gi|17232757|ref|NP_489305.1| DNA gyrase subunit B [Nostoc sp. PCC 7120]
 gi|17134404|dbj|BAB76964.1| DNA gyrase B subunit [Nostoc sp. PCC 7120]
          Length = 645

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 292/639 (45%), Positives = 402/639 (62%), Gaps = 14/639 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            SSY AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS  V+D+GRGIP D H   G SA E +MT LHAGGKF    YKVSGGLHGVG+S
Sbjct: 61  EINADGSVAVTDDGRGIPIDTHSRTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  +++ + R+  ++   +  G+    L+        TGT VTF P + IF+   
Sbjct: 121 VVNALSEVVEVTVWRDKKVHTQRYERGVPVTELITNPYKEARTGTSVTFKPDTQIFTNSI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+Y TL  RLREL++LN+ V+I+  D R     S  P+  +  YKGGI+ +++Y++R K
Sbjct: 181 EFDYITLSGRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDK 240

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +PL +  I +QG R+N+ I+++++W  D Y +NVL F NNI   DGGTHL GL++ LTR 
Sbjct: 241 QPLHEEIIYVQGERNNVQIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRT 300

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +   K    K+ + ++ G+  REG T+V+S+K+PDP F  QTK KL ++EVR +V+S 
Sbjct: 301 LNTIARKRNKIKEHEPNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V + L+ +LE HP  A  I+ K + A    +AAR AR+L RRK VL+ + LPGKLADCS 
Sbjct: 361 VGEVLTEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKILN+E+    K+  + EI  LIT
Sbjct: 421 RDPSESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALIT 480

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG G+  + FD  +LRYH+IIIMTDADVDGAHIRTL+LTFF+R   +LI  GF+YI  P
Sbjct: 481 ALGLGVKGEEFDSTQLRYHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACP 540

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598
           PLY + RG++ +Y   E  L+  +     +           G +    L         ++
Sbjct: 541 PLYKVERGRNYEYCYSERELQQAIAKFPANANYTIQRFKGLGEMMPEQLWTT-----TMN 595

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
              +       +   E   I  +   +        + + 
Sbjct: 596 PETRTLKRVEIEDAAEADRIFTILMGDRVAPRREFIETY 634



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
           K E+     +    I++      V    +      F +  +   I    I      +  +
Sbjct: 487 KGEEFDSTQLRYHRIII-MTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACPPLYKV 545

Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
               +         L   I         ++QR+KGLGEM   QLW TT+NP+TR+L RV+
Sbjct: 546 ERGRNYEYCYSERELQQAIAKFPANANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKRVE 605

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
           I DA++AD +F+ LMGD V PRREFI+          LDI
Sbjct: 606 IEDAAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLDI 645


>gi|238924637|ref|YP_002938153.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
 gi|238876312|gb|ACR76019.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
          Length = 640

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 252/621 (40%), Positives = 354/621 (57%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  +YD  SI IL+GL+AV+KRP MYIG      GL+H+IYE++DN++DE L G  D I 
Sbjct: 3   KKQTYDEKSIAILEGLEAVRKRPGMYIGSV-TTKGLNHLIYEIVDNSVDEHLAGACDTIR 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  +GSCTV DNGRGIP  +H + G+SAA V+ + LHAGGKF+   YK SGGLHGVG 
Sbjct: 62  VTLEKNGSCTVEDNGRGIPVGMHAK-GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS+++ + I R+G I+   +  G+    L        G     TGT++ FLP  +
Sbjct: 121 SVVNALSTYMDVEISRDGYIHHDRYEKGVPVVELENGLLPTLGKTK-KTGTKINFLPDPE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + +++RL+E ++LN  + I   DKR      I      GI  FV  LD++ 
Sbjct: 180 IFEKTRFREEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIEYHEPEGIVGFVKDLDKNI 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I   G  +NI +++A ++   +HEN+L F NNI   +GG H++G ++A T  I
Sbjct: 240 EKLH-DVIYFTGESENIKVEVAFQYTSEFHENILGFCNNIYNSEGGAHITGFKTAFTGII 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY  +    K    +  G D R G T+V+S+K PDPRF  QTK KL + +         
Sbjct: 299 NSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQDANRATAKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ND +  + +++    K ++     A+ +R A  +A+     K      S  GKLA+C  R
Sbjct: 359 NDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDS-NGKLANCESR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K E+F+VEGDSAGGSAK  R+R  QAI+P+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY KIIIM DADVDGAHI TLLLT FFR MP LI  G +Y+ 
Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPELILEGHVYVA 537

Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY  I      +Y+ D+  L+ Y    +    ++ +     + +       ++ A +
Sbjct: 538 MPPLYKAIPSKGEEKYLYDDAELDKYRKTHTGKFTLQRYKGLGEMDADQLWDTTLNPATR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           + K I+              +
Sbjct: 598 MLKRIEIEDGRLANDVTSLLM 618



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 53/69 (76%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLW+TTLNP TR L R++I D   A+D+ S LMG +V PR+EFI E
Sbjct: 572 TLQRYKGLGEMDADQLWDTTLNPATRMLKRIEIEDGRLANDVTSLLMGSDVPPRKEFIYE 631

Query: 795 NSLPSALDI 803
           ++  + LD+
Sbjct: 632 HAHDAELDV 640


>gi|306833366|ref|ZP_07466493.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus bovis ATCC
           700338]
 gi|304424136|gb|EFM27275.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus bovis ATCC
           700338]
          Length = 649

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 270/623 (43%), Positives = 393/623 (63%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I V +N DGS TVSD GRG+PT  H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNQIDVIINSDGSVTVSDQGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V ++L D R  E   +   Y+ G++ FV YL+
Sbjct: 179 DDTIFSTIDFKFNTIAERLKESAFLLKDVTLTLTDNRPEEAEHLEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I + G   N  +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 239 EDKETLTP-VISVTGEDQNFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  KS   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   ++ ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G + F++    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAE-FNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY +++     + ++Y   +  LE+         +++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGRKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 597 TMNPETRTLIRVTIEDLARAERR 619



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       ++   +N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEEINTMIYTIGAGVGAEFNVENSNY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGRKEQVEYA 560

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 621 NVLMGDKVEPRRKWIEDN 638


>gi|225854359|ref|YP_002735871.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae JJA]
 gi|225723890|gb|ACO19743.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae JJA]
          Length = 647

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 390/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG   VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|288905177|ref|YP_003430399.1| DNA topoisomerase IV subunit B [Streptococcus gallolyticus UCN34]
 gi|306831248|ref|ZP_07464408.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|288731903|emb|CBI13468.1| Putative DNA topoisomerase IV subunit B [Streptococcus gallolyticus
           UCN34]
 gi|304426484|gb|EFM29596.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 649

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 270/623 (43%), Positives = 393/623 (63%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I V +N DGS TVSD GRG+PT  H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNQIDVIINSDGSVTVSDQGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V ++L D R  E   +   Y+ G++ FV YL+
Sbjct: 179 DDTIFSTIDFKFNTIAERLKESAFLLKDVTLTLTDNRPEEAEHLEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I + G   N  +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 239 EDKETLTP-VISVTGEDQNFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  KS   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   ++ ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G + F++    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAE-FNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  LE+         +++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 597 TMNPETRTLIRVTIEDLARAERR 619



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       ++   +N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEEINTMIYTIGAGVGAEFNVENSNY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEQVEYA 560

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 621 NVLMGDKVEPRRKWIEDN 638


>gi|324991101|gb|EGC23035.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK353]
          Length = 649

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/658 (41%), Positives = 394/658 (59%), Gaps = 23/658 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          +       G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  ++   +       +          V   +  +     +   +   L    E
Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|32448028|gb|AAO16800.1| ParE [Streptococcus mitis]
          Length = 647

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G IY+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E    A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMEDGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWKDGELEELRKQLGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I++      +
Sbjct: 595 TMNPETRTLIRVTIENLARAERR 617



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWKDGELEELRKQLGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I + ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIENLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|322392130|ref|ZP_08065592.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus peroris
           ATCC 700780]
 gi|321145030|gb|EFX40429.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus peroris
           ATCC 700780]
          Length = 647

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVEDHGRGMPTGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLEKVGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y T+  RL E +FL  +V +SL+DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYHTISERLNESAFLLKNVTLSLMDKRTDET--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE           ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEKLRSQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ + S   KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEKLRSQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|223932477|ref|ZP_03624479.1| DNA topoisomerase IV, B subunit [Streptococcus suis 89/1591]
 gi|330832700|ref|YP_004401525.1| topoisomerase IV subunit B [Streptococcus suis ST3]
 gi|223898931|gb|EEF65290.1| DNA topoisomerase IV, B subunit [Streptococcus suis 89/1591]
 gi|329306923|gb|AEB81339.1| topoisomerase IV subunit B [Streptococcus suis ST3]
          Length = 649

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/623 (43%), Positives = 389/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHHM++E++DNA+DE+L G
Sbjct: 1   MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS +VSD GRG+P  +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLSVSDRGRGMPVGMHA-TGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F   G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V ++L D+R+ E  +    Y+ G++ FVSYL+
Sbjct: 179 DDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGE--QEEYHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +AM++NDGY +N+L F NN+  KDGGTH +GL+ A+T
Sbjct: 237 EDKETLTPVL-YFEGEDAGFQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V+D L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGSD-FTLEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LED   +      ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKTEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 61/95 (64%)

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              +       +KI        L+ +     KG  +QRYKGLGEMNA QLWETT+NP+TR
Sbjct: 542 LYKMSKGKGKTEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWETTMNPETR 601

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV I D ++A+   S LMGD+VEPRR++I++N
Sbjct: 602 TLIRVTIEDLARAERRVSVLMGDKVEPRRKWIEDN 636


>gi|293365618|ref|ZP_06612327.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus oralis ATCC
           35037]
 gi|307703568|ref|ZP_07640510.1| DNA topoisomerase IV, B subunit [Streptococcus oralis ATCC 35037]
 gi|291315986|gb|EFE56430.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus oralis ATCC
           35037]
 gi|307622975|gb|EFO01970.1| DNA topoisomerase IV, B subunit [Streptococcus oralis ATCC 35037]
          Length = 647

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEIALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|307709026|ref|ZP_07645486.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK564]
 gi|307620362|gb|EFN99478.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK564]
          Length = 647

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 279/624 (44%), Positives = 390/624 (62%), Gaps = 21/624 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G IY+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   +   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDES--VEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+                  G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELR-KHFGKGATLQRYKGLGEMNADQLWE 593

Query: 590 FI---DDALKIDKLIKDFYPNHDK 610
                +    I   I+D      +
Sbjct: 594 TTMNPETRTLIRVTIEDLARAERR 617



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKHFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|32447712|gb|AAO16799.1| ParE [Streptococcus oralis ATCC 35037]
          Length = 647

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 276/623 (44%), Positives = 390/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVS L+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSSLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   ++ A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEDALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELAPNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSLEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|307704622|ref|ZP_07641524.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK597]
 gi|307621824|gb|EFO00859.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK597]
          Length = 647

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 279/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G IY+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEE--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|55822558|ref|YP_140999.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus
           CNRZ1066]
 gi|55738543|gb|AAV62184.1| DNA topoisomerase IV (subunit B) [Streptococcus thermophilus
           CNRZ1066]
          Length = 649

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 276/652 (42%), Positives = 399/652 (61%), Gaps = 17/652 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D+I VTLN DGS +VSD+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDVIAVTLNKDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G++Y   F N G     L   G    + TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKEPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF ++T+  RL+E +FL  +V ++L D R  E       Y+ G++ FVSYL+
Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I I G + +  ++LA+++NDGY +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 239 EDKETLTP-VIYIDGDQQDFHLELALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           +    Y  K+   K+  +++ G D REG ++V+S+ +P+   +F  QTK+KL S   R +
Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+  V++ L+ +L E+   A  +V+K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590
           +YI  PPLY +++GK  + V +    +  L           +       G ++ + L   
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWET 596

Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
               +    I   I D      +  +     +       +  +  +L    A
Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEETTA 648



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       ++    N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K ++    
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEVVEYA 560

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     +G  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 621 SVLMGDKAAPRRQWIEDN 638


>gi|253751556|ref|YP_003024697.1| topoisomerase IV subunit B [Streptococcus suis SC84]
 gi|253753457|ref|YP_003026598.1| topoisomerase IV subunit B [Streptococcus suis P1/7]
 gi|253755717|ref|YP_003028857.1| topoisomerase IV subunit B [Streptococcus suis BM407]
 gi|226237524|dbj|BAH47272.1| topoisomerase IV subunit B [Streptococcus suis]
 gi|251815845|emb|CAZ51453.1| topoisomerase IV subunit B [Streptococcus suis SC84]
 gi|251818181|emb|CAZ55981.1| topoisomerase IV subunit B [Streptococcus suis BM407]
 gi|251819703|emb|CAR45521.1| topoisomerase IV subunit B [Streptococcus suis P1/7]
 gi|292558203|gb|ADE31204.1| topoisomerase IV subunit B [Streptococcus suis GZ1]
          Length = 647

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/623 (43%), Positives = 390/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHHM++E++DNA+DE+L G
Sbjct: 1   MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS +VSD GRG+P  +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLSVSDRGRGMPVGMHA-TGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F   G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V ++L D+R+ E  +    Y+ G++ FVSYL+
Sbjct: 179 DDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGE--QEEYHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +AM++NDGY +N+L F NN+  KDGGTH +GL+ A+T
Sbjct: 237 EDKETLTPVL-YFEGEDAGFQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V+D L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGSD-FTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY +++G    + + Y   +  LED   +      ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 61/95 (64%)

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              +       +KI        L+ +     KG  +QRYKGLGEMNA QLWETT+NP+TR
Sbjct: 542 LYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWETTMNPETR 601

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV I D ++A+   S LMGD+VEPRR++I++N
Sbjct: 602 TLIRVTIEDLARAERRVSVLMGDKVEPRRKWIEDN 636


>gi|323488988|ref|ZP_08094225.1| DNA topoisomerase IV subunit B [Planococcus donghaensis MPA1U2]
 gi|323397380|gb|EGA90189.1| DNA topoisomerase IV subunit B [Planococcus donghaensis MPA1U2]
          Length = 656

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 265/597 (44%), Positives = 372/597 (62%), Gaps = 16/597 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  IQN++Y+ ++IQ+L+GLDAV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MA-KIQNTAYNEEAIQVLEGLDAVRKRPGMYIGSTD-TRGLHHLVYEIVDNSVDEALAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+VT++ D S +V D GRG+PT +H   G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 59  GDKISVTIHEDNSISVRDYGRGMPTGMH-RSGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSS+L++ I R+G  Y   F N G     L   GS   +TGT + FLP  
Sbjct: 118 HGVGASVVNALSSFLEVTIYRDGKKYRQRFENGGKPVTTLEEIGSTK-ETGTMIHFLPDE 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFSV  +NY+TL  RLRE +FL   ++I L D+R+    +    Y+ GIEAFVSYL+  
Sbjct: 177 SIFSVSKYNYETLSERLRESAFLLKGLKIELFDQRTE--AKDVFHYETGIEAFVSYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L      I+G +D + I+ + ++NDGY E +L F NN+  +DGGTH +G ++A+TR 
Sbjct: 235 KDVLHPVA-YIEGQQDEMEIEFSFQFNDGYSETILSFVNNVRTRDGGTHETGAKAAMTRV 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K   +++ G D REG  +++S+++P+   +F  QTK KL +SE RS+V+
Sbjct: 294 FNDYARKINLLKDKDKNLEGSDIREGLAAIVSVRIPEALLQFEGQTKSKLGTSEARSIVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           S V+  L  +LEE+   +  +V+       + +     R      +K     A L GKL 
Sbjct: 354 SVVSQKLMYFLEENADLSASLVRKAIRAAQARLAARKAREDARNGKKRKKSDALLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+ KK+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+ ++++ ++EI 
Sbjct: 414 PAQSRNAKKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVVNTEKAKLEEIMKNEEIS 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+    F I+ + Y+KIIIMTDAD DGAHI+ LLLTFFFR M  LI  G ++
Sbjct: 474 TIIHAIGGGV-SSDFSIDDIAYNKIIIMTDADTDGAHIQVLLLTFFFRYMKPLIEAGKVF 532

Query: 536 IIKPPLYGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +++G   + V D    E   D  I +             G ++ + L  
Sbjct: 533 IALPPLYKVSKGLGKKEVIDYAWTEADLDASIKKVGKGYTLQRYKGLGEMNADQLWE 589



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG--PCSL-LDTIFSIGRKGISMQRY 739
           F F      I + ++      +  +     K ++         LD       KG ++QRY
Sbjct: 517 FFFRYMKPLIEAGKVFIALPPLYKVSKGLGKKEVIDYAWTEADLDASIKKVGKGYTLQRY 576

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           KGLGEMNA QLWETT+NP+TR+L+RV I D+++A+   + LMGD+VEPRR +I+ N
Sbjct: 577 KGLGEMNADQLWETTMNPETRTLIRVTIEDSARAERGITTLMGDKVEPRRRWIESN 632


>gi|73916372|gb|AAZ93054.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916374|gb|AAZ93055.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVVYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735
            + +F  +Y R                         +  +       L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVVYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|148266452|ref|YP_001245395.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH9]
 gi|150392485|ref|YP_001315160.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|147739521|gb|ABQ47819.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus JH9]
 gi|149944937|gb|ABR50873.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1]
          Length = 640

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 290/592 (48%), Positives = 397/592 (67%), Gaps = 6/592 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A+ I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGL
Sbjct: 60  ANKIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +
Sbjct: 120 HGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGE 178

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238
           IF+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ 
Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNE 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR
Sbjct: 239 NKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+ 
Sbjct: 299 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS
Sbjct: 359 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +I
Sbjct: 419 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +
Sbjct: 479 TAFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PPLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 538 PPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 589



 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 507 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 564

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 565 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 621

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 622 VENRRQFIEDNAVYANLD 639


>gi|238855510|ref|ZP_04645815.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3]
 gi|260665214|ref|ZP_05866063.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931536|ref|ZP_06337035.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|313472767|ref|ZP_07813255.1| DNA gyrase, B subunit [Lactobacillus jensenii 1153]
 gi|238831876|gb|EEQ24208.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3]
 gi|260560951|gb|EEX26926.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304343|gb|EFA96446.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|313448866|gb|EEQ68253.2| DNA gyrase, B subunit [Lactobacillus jensenii 1153]
          Length = 651

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/611 (46%), Positives = 399/611 (65%), Gaps = 7/611 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN IDE L G+A  
Sbjct: 13  EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDECLAGFATK 71

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+  DGS TV D+GRGIP D+ K+ G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 72  IEVTVEEDGSVTVQDDGRGIPVDIQKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIF 182
           G SVVNALS+ +++ + R+G  Y + F +G + + L   G+   +  GT V F P  DIF
Sbjct: 132 GASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIF 191

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +      D  L+ R++EL+FLN  ++++  DKR          Y+GGI+ +V++LD  ++
Sbjct: 192 TETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKNSAETDVYHYEGGIKEYVAFLDEKEE 251

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L  +P+ ++G  D I++++A+++  GY   ++ F NNI   +GG H +G ++ALTR I 
Sbjct: 252 KLFDTPVYVEGDYDGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFKTALTRVIN 311

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+V+SIK P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 312 DYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFS 371

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 372 EAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANLPGKLADNTSND 431

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI TL TAL
Sbjct: 432 PEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 491

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FD+ K RYHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPL
Sbjct: 492 GTGFGAD-FDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYVYIARPPL 550

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK ++Y+  +E L DYL +   S +         G +S + L     D    ++ 
Sbjct: 551 YQVKQGKIIKYLDSDEELHDYLGSLQPSPKPTVQRYKGLGEMSADQLWETTMDPE--NRR 608

Query: 601 IKDFYPNHDKT 611
           +    P + + 
Sbjct: 609 LDRVDPKYAED 619



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETT++P+ R L RV    A  AD +F  LMG+EV PRR+FI +
Sbjct: 582 TVQRYKGLGEMSADQLWETTMDPENRRLDRVDPKYAEDADAVFEMLMGNEVGPRRDFITK 641

Query: 795 NSLPS-ALD 802
           N+     LD
Sbjct: 642 NAKYVENLD 650


>gi|293336227|ref|NP_001168561.1| hypothetical protein LOC100382343 [Zea mays]
 gi|223949177|gb|ACN28672.1| unknown [Zea mays]
          Length = 726

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 266/597 (44%), Positives = 370/597 (61%), Gaps = 10/597 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +   ++ Y A ++Q+L+ LD V+ RP MYIG T G  GLHH++YE+LDNA+DE+  G+
Sbjct: 78  MHEKQVSAEYTAANVQVLEALDGVRTRPGMYIGST-GPRGLHHLVYEILDNAVDEAQAGH 136

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSG 118
           A  I V L+ D S +V+DNGRGIPTD+H +   S  E ++T +HAGGKF      Y VSG
Sbjct: 137 ASKIDVVLHDDNSVSVTDNGRGIPTDMHPQTKKSCVETVLTLMHAGGKFGGSKSGYSVSG 196

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTF 175
           GLHGVG+SVVNALS  L++ + R+G  +  S+  G     L  +   G   +  GT + F
Sbjct: 197 GLHGVGLSVVNALSETLEVTVWRDGKEHRQSYSRGKPTTRLTSSTLTGETSSRQGTRIRF 256

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  DIF+   DF+++T+  R+REL+FLN  + I L  +     +     Y GG+  +V 
Sbjct: 257 WPDKDIFTTTIDFDFNTISSRIRELAFLNPELTIILTKEEGHTVQRNEYCYAGGLVEYVK 316

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+  KKPL   PI  +   D I++D++++W+ D Y + VL + N+I   DGGTH+ GL+
Sbjct: 317 WLNTDKKPLH-DPIAFRKELDGITVDVSLQWSSDSYSDTVLGYANSIRTIDGGTHIDGLK 375

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR I +  +KS   K    ++ G+  REG T ++S+K+P P F  QTK +L + EVR
Sbjct: 376 ASLTRTINNLAKKSKTIKDKDITLSGEHVREGMTCIISVKVPSPEFEGQTKTRLGNPEVR 435

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VE  V + L+ +LE HP     I+ K L+A     AA+RAR+L R K VL  +SLPGK
Sbjct: 436 RIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPGK 495

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC+  +P++SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  ++E
Sbjct: 496 LADCASANPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEE 555

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  LI ALG G+  + F    LRYHKI+I+TDADVDGAHIRTLLLTFFFR   +L   G 
Sbjct: 556 IQNLILALGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQRALFDEGC 615

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +Y+  PPLY + RGK   Y  D+  L++ +     +           G +    L  
Sbjct: 616 IYVGVPPLYKVERGKLAHYCYDDADLKEIVNTFPANASYHIQRFKGLGEMMPAQLWE 672



 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 4/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           + N E   E  +    ++ N +  +    K E     ++    I++      V    +  
Sbjct: 539 ILNIERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYHKIVIL-TDADVDGAHIRT 597

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQ 737
               F F  +        I      +  +              L + + +        +Q
Sbjct: 598 LLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKLAHYCYDDADLKEIVNTFPANASYHIQ 657

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           R+KGLGEM  +QLWETT++P+ R L ++++ DA++A+ +FS LMG  VE R+E IQ+ + 
Sbjct: 658 RFKGLGEMMPAQLWETTMDPERRLLKQLRVEDAAEANVVFSSLMGTRVEYRKELIQKAAS 717

Query: 798 PSALD 802
              +D
Sbjct: 718 MINID 722


>gi|284010223|dbj|BAI66711.1| DNA gyrase B [Borrelia sp. BF16]
          Length = 625

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 268/576 (46%), Positives = 390/576 (67%), Gaps = 6/576 (1%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           +LKGL+AV+KRP MYIG     +GLHH++YE++DN+IDE+L G+ D I V +N D S TV
Sbjct: 1   VLKGLEAVRKRPGMYIGSVS-INGLHHLVYELIDNSIDEALAGFCDKIEVVINSDSSITV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
           SDNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVVNALSS+L+
Sbjct: 60  SDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + + R+  ++  +F  GI  + + V G +    GT V FL  S+IF   +++++ L  RL
Sbjct: 120 VFVYRDEKVFRQTFSRGIPTSEVEVVGESS-SRGTRVIFLADSEIFETLEYSFEILSRRL 178

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           REL+FLN  +QIS+ D+R  E R +  +Y+GGI +FV YL  + + +   P  ++G  + 
Sbjct: 179 RELAFLNDKLQISIEDRRLGEKRFLEFYYEGGIRSFVDYLTNNSRSIQSDPYFVEGVSNE 238

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           + +++ ++W +GY EN+L F NNI  +DGGTH++G RS L + +     +   SKKD  +
Sbjct: 239 VIVNIGLKWTEGYSENILSFVNNIKTQDGGTHVTGFRSGLFKAMNEAFNRLKISKKDVPT 298

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           +  DD +EG T+V+SIK+P+P+F  QTK KL +S V+ +VE+  +D L   +  +PLE +
Sbjct: 299 LTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETITHDRLLKVIANNPLEVE 358

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           II  K + A+  R+AAR+AR+  R+K   +  +LPGKLADCS ++P + E+++VEGDSAG
Sbjct: 359 IIFDKAIKAARAREAARKARESERKKSTFESLALPGKLADCSSKNPIEREIYIVEGDSAG 418

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR R  QAILPL GK+LNVE+ + D+++++ ++  +I +LG G+G+  F I +LR
Sbjct: 419 GSAKMGRDRFFQAILPLWGKMLNVEKTKEDRVITNDKLIPIIASLGAGVGKT-FCIERLR 477

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556
           YHK+IIM DADVDG+HIRTLLLTFFFR M  LI N  +YI  PPLY +     + Y  D+
Sbjct: 478 YHKVIIMADADVDGSHIRTLLLTFFFRYMRDLIENSHVYIAMPPLYKVKSENKVHYFYDD 537

Query: 557 ESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRN 589
              E +L +                 G ++   L  
Sbjct: 538 IEKESFLESIGSEKRDRVNLQRYKGLGEMNPTQLWE 573



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 8/130 (6%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP------CSLLDTIFSIGRKGI 734
            + +F  +Y R                    +  K+          S L++I S  R  +
Sbjct: 497 LLLTFFFRYMRDLIENSHVYIAMPPLYKVKSEN-KVHYFYDDIEKESFLESIGSEKRDRV 555

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMN +QLWETT+NPDTR +  V I D+ QA+ +F  LMGD+VEPRREFI++
Sbjct: 556 NLQRYKGLGEMNPTQLWETTMNPDTRKMKLVGIDDSMQAERIFVTLMGDDVEPRREFIEQ 615

Query: 795 NSLP-SALDI 803
           N+L    LD+
Sbjct: 616 NALDVVNLDV 625


>gi|156888537|gb|ABU96673.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 621

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 275/617 (44%), Positives = 394/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFATH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV DNGRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IQVFIEADNSITVVDNGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF+
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K   +I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKVVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++        ++  +  +L  E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYIQPGIEQEEQLKTAL--EKYSVGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 15/241 (6%)

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF--CDSKGVISKNDLRNFIDD 593
           I       +TR KS   + +         +   S+        DS G  +K+        
Sbjct: 394 IAAKRAREVTRKKSGWEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQA 453

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L I   I +         +    I  +F             SK   +   I   ++   
Sbjct: 454 ILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKVVIMTDADVDG 513

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                    L+ R  R V E   +  +    +G K        I+        L    +K
Sbjct: 514 AHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEK 573

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +             GR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++A
Sbjct: 574 YSV-------------GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEA 620

Query: 774 D 774
           D
Sbjct: 621 D 621


>gi|254820903|ref|ZP_05225904.1| DNA gyrase subunit B [Mycobacterium intracellulare ATCC 13950]
          Length = 677

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/667 (40%), Positives = 385/667 (57%), Gaps = 42/667 (6%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+         Y A +I +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ 
Sbjct: 1   MAAQKKKAQDDYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKV 116
           GYA+ + V +  DGS  V+DNGRGIP  +H   G    +V+MT+LHAGGKF      Y V
Sbjct: 60  GYANKVDVRILDDGSVEVADNGRGIPVAMHA-TGAPTVDVVMTQLHAGGKFGGENSGYNV 118

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ L++ I R+G  +   + + +    L   G A   TGT + F 
Sbjct: 119 SGGLHGVGVSVVNALSTRLEVDIARDGYEWSQFYDHAVP-GTLKQ-GEATKRTGTTIRFW 176

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------- 214
              DIF   +++++T+  RL+E++FLN  + I+L D+R                      
Sbjct: 177 ADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVSNEEVVDEVVSDTADAPKSAQ 236

Query: 215 --------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                     + +  T  Y GG+  FV +++R K P+ QS I   G      +++AM+WN
Sbjct: 237 EKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSIIDFDGKGPGHEVEIAMQWN 296

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG 
Sbjct: 297 GGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGL 356

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++
Sbjct: 357 AAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVVVNKAVSSA 416

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR   
Sbjct: 417 QARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSM 476

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DA
Sbjct: 477 FQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKIVLMADA 535

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLIN 565
           DVDG HI TLLLT  FR M  LI NG +++ +PPLY +   +S  ++   +   +  L  
Sbjct: 536 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 595

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
              + +     D           +  +                  T  + A    +F+  
Sbjct: 596 GQKAGKKINKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQV--TLDDAAAADELFSIL 653

Query: 626 SDQEINV 632
             ++++ 
Sbjct: 654 MGEDVDA 660



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 592 LLEAGQKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDDAAAADELF 650

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 651 SILMGEDVDARRSFITRNAKDVRFLDV 677


>gi|148984582|ref|ZP_01817850.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP3-BS71]
 gi|148993664|ref|ZP_01823111.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP9-BS68]
 gi|148997072|ref|ZP_01824726.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP11-BS70]
 gi|149007204|ref|ZP_01830868.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|149021718|ref|ZP_01835749.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|168490285|ref|ZP_02714484.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP195]
 gi|168493006|ref|ZP_02717149.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|168575508|ref|ZP_02721444.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae MLV-016]
 gi|225858652|ref|YP_002740162.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae 70585]
 gi|225861253|ref|YP_002742762.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229147|ref|ZP_06962828.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255376|ref|ZP_06978962.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503141|ref|YP_003725081.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|307067449|ref|YP_003876415.1| type IIA topoisomerase subunit B [Streptococcus pneumoniae AP200]
 gi|73916362|gb|AAZ93049.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916370|gb|AAZ93053.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916384|gb|AAZ93060.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916390|gb|AAZ93063.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916394|gb|AAZ93065.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916396|gb|AAZ93066.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916398|gb|AAZ93067.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916400|gb|AAZ93068.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916402|gb|AAZ93069.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916406|gb|AAZ93071.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916408|gb|AAZ93072.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916410|gb|AAZ93073.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916434|gb|AAZ93085.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916438|gb|AAZ93087.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916440|gb|AAZ93088.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916460|gb|AAZ93098.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|147756772|gb|EDK63812.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP11-BS70]
 gi|147761242|gb|EDK68209.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|147922973|gb|EDK74088.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP3-BS71]
 gi|147927744|gb|EDK78767.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP9-BS68]
 gi|147930179|gb|EDK81165.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|183571345|gb|EDT91873.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP195]
 gi|183576946|gb|EDT97474.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578568|gb|EDT99096.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae MLV-016]
 gi|225720805|gb|ACO16659.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae 70585]
 gi|225728117|gb|ACO23968.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238736|gb|ADI69867.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301799848|emb|CBW32422.1| topoisomerase IV subunit B [Streptococcus pneumoniae OXC141]
 gi|306408986|gb|ADM84413.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus pneumoniae AP200]
 gi|327390204|gb|EGE88547.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA04375]
 gi|332073182|gb|EGI83661.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA17570]
          Length = 647

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|332294866|ref|YP_004436789.1| DNA topoisomerase (ATP-hydrolyzing) [Thermodesulfobium narugense
           DSM 14796]
 gi|332177969|gb|AEE13658.1| DNA topoisomerase (ATP-hydrolyzing) [Thermodesulfobium narugense
           DSM 14796]
          Length = 632

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 268/626 (42%), Positives = 385/626 (61%), Gaps = 26/626 (4%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y +  I +L+G++AV+KRP MYIG   G  GL H++YEV+DN++DE + GY   I+VT++
Sbjct: 3   YTSKDIVVLEGMEAVRKRPGMYIGSI-GIKGLLHLVYEVVDNSVDEFMAGYCKKISVTIH 61

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
                T+ D+GRGIPTD+H++   +A E+++T LHAGGKFN K YKVSGGLHGVGVSVVN
Sbjct: 62  KSNYVTIEDDGRGIPTDIHEQTNKNALELVLTTLHAGGKFNDKVYKVSGGLHGVGVSVVN 121

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS      + R+G I+   F  G   + + + G + +  GT++ FLP  +IF    ++ 
Sbjct: 122 ALSERFIATVYRDGKIFTQEFSRGNPVSEIKIIGES-DKHGTKIKFLPDKEIFKDITWDT 180

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L+ R +E++FLN  ++I   D+R  E    T + + GI  FV YL+++ KPL   PI 
Sbjct: 181 DELKARFQEIAFLNPGLEIVFSDERIGEK--ETFYDEKGILGFVEYLNKNSKPLYSPPIV 238

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           IQG  + + +D+A++  D  +EN++CF NNI  K+GG+HL+  +++LT+    Y +    
Sbjct: 239 IQGEYEEVYVDIALQHVDSTYENIICFANNIATKEGGSHLTAFKNSLTKLTNQYAKDKKI 298

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K +  +  G+D R G T+V+S+K+ +P F  QTK KL S E ++ VE  +   +   LE
Sbjct: 299 LK-EDENFQGEDIRSGLTAVISVKLKEPLFEGQTKTKLSSLEAKNAVEKLMEKFIIE-LE 356

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA-SLPGKLADCSERDPKKSELF 428
             P  A +I+K  L A   R+AA++ARD+ R+K     + SLPGKLA CS + P++ ELF
Sbjct: 357 SKPEVANMIIKSSLAAKEAREAAKKARDMVRKKHDFTSSISLPGKLALCSSKKPEECELF 416

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI--- 485
           +VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A  DK+L++QEI  L  ++G      
Sbjct: 417 IVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANIDKILANQEIKALAASIGLSFYEE 476

Query: 486 -GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
               S  I  LR+HKIIIMTDADVDG+HIRTLLLT FFR    LI  G ++I +PPLY I
Sbjct: 477 DKPVSDWIKNLRFHKIIIMTDADVDGSHIRTLLLTLFFRYFRPLIETGKVFIAQPPLYMI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG------------VISKNDLRNFID 592
            +GK  +Y  ++E L D L      + I+ F                    +  L+  I+
Sbjct: 537 RKGKERRYAMNDEELNDILSEIKSPDSIQRFKGLGEMTPSQLWDVAMNPEKRTILKVCIE 596

Query: 593 DALKIDKLIKDFYP---NHDKTFIEQ 615
           DA + +++ +        + K FIE+
Sbjct: 597 DASEANRIFEILMGDNVEYRKAFIER 622



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 4/205 (1%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +            +  I  V     D+ +       LA  +     + +K     I N  
Sbjct: 429 QGRDRRFQAILPLRGKILNVEKANIDKILANQEIKALAASIGLSFYEEDKPVSDWIKNLR 488

Query: 662 I--LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
              ++      V    +        F      I + ++       L +I  G + +    
Sbjct: 489 FHKIIIMTDADVDGSHIRTLLLTLFFRYFRPLIETGKVF-IAQPPLYMIRKGKERRYAMN 547

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
              L+ I S  +   S+QR+KGLGEM  SQLW+  +NP+ R++L+V I DAS+A+ +F  
Sbjct: 548 DEELNDILSEIKSPDSIQRFKGLGEMTPSQLWDVAMNPEKRTILKVCIEDASEANRIFEI 607

Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803
           LMGD VE R+ FI+  +     LD+
Sbjct: 608 LMGDNVEYRKAFIERYAREVKNLDV 632


>gi|323341105|ref|ZP_08081353.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           ruminis ATCC 25644]
 gi|323091526|gb|EFZ34150.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           ruminis ATCC 25644]
          Length = 652

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 294/601 (48%), Positives = 408/601 (67%), Gaps = 7/601 (1%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+ D I VT+ 
Sbjct: 18  YDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFCDEINVTVE 76

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D S TV DNGRGIP D+ K+ G  A E + T LHAGGKF    YKVSGGLHGVG SVVN
Sbjct: 77  KDNSITVQDNGRGIPVDIQKKTGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGASVVN 136

Query: 130 ALSSWLKLRIKREG--NIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186
           ALS+ L +++KREG  N+Y + F  G + NP+ V G    ++ GT V F P  DIF    
Sbjct: 137 ALSTELDVQVKREGDTNVYGIDFELGKVKNPMKVIGQCQEHEHGTRVHFCPDPDIFKETT 196

Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            ++   L  R+REL+FLN  ++I++ DKR   P +    Y GGI+ +V YL++ K+ L  
Sbjct: 197 VYDIKVLTTRIRELAFLNKGLKITIEDKRPETPTKEEFHYAGGIKHYVEYLNKGKEVLFD 256

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI ++G + NI++++A+++ D +H N+L FTNNI   +GGTH SG ++ALTR I  Y  
Sbjct: 257 DPIYVEGEQRNITVEVALQYTDDFHSNLLTFTNNIHTYEGGTHESGFKTALTRVINDYAR 316

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K++  ++ G+D REG T+V+SIK PDP+F  QTK KL +S+ R+V +   ++  S
Sbjct: 317 KAGILKENDDNLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDARAVTDKMFSETFS 376

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            ++ E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD + +DP+ S
Sbjct: 377 KFMLENPSVAKRIVEKGMLAAKARVAAKRAREVTRKKNGLEISNLPGKLADNTSKDPEIS 436

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+++EI +L TALGTG 
Sbjct: 437 ELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASLDRILANEEIRSLFTALGTGF 496

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G   FD+ K  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPLY + 
Sbjct: 497 G-QDFDVEKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIEKGYVYIAQPPLYQVR 555

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
           +GK ++Y+  +E L+D L +   S + +       G +    L     D  K   L  + 
Sbjct: 556 QGKMIRYIDSDEELKDVLGSLQPSPKPVVQRYKGLGEMDAEQLWETTMDPEKRRLLRVNL 615

Query: 605 Y 605
            
Sbjct: 616 S 616



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R LLRV ++DA +A+ +F  LMGD+V PRR+FI++N
Sbjct: 584 VQRYKGLGEMDAEQLWETTMDPEKRRLLRVNLSDAEEANSVFEMLMGDQVGPRRQFIEDN 643

Query: 796 SLPS-ALDI 803
           +     LD+
Sbjct: 644 ATFVNNLDV 652


>gi|149010518|ref|ZP_01831889.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP19-BS75]
 gi|168490941|ref|ZP_02715084.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|182683766|ref|YP_001835513.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CGSP14]
 gi|225856520|ref|YP_002738031.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae P1031]
 gi|303254054|ref|ZP_07340171.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS455]
 gi|303260740|ref|ZP_07346699.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP-BS293]
 gi|303263098|ref|ZP_07349028.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae
           SP14-BS292]
 gi|303267485|ref|ZP_07353336.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS457]
 gi|303269831|ref|ZP_07355577.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS458]
 gi|307127597|ref|YP_003879628.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae 670-6B]
 gi|6851037|emb|CAA91550.2| DNA topoisomerase IV [Streptococcus pneumoniae]
 gi|73916356|gb|AAZ93046.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916376|gb|AAZ93056.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916382|gb|AAZ93059.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916392|gb|AAZ93064.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916412|gb|AAZ93074.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916424|gb|AAZ93080.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916436|gb|AAZ93086.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916442|gb|AAZ93089.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|147764999|gb|EDK71928.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP19-BS75]
 gi|182629100|gb|ACB90048.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CGSP14]
 gi|183574686|gb|EDT95214.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|225725021|gb|ACO20873.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae P1031]
 gi|301793990|emb|CBW36388.1| topoisomerase IV subunit B [Streptococcus pneumoniae INV104]
 gi|301801677|emb|CBW34382.1| topoisomerase IV subunit B [Streptococcus pneumoniae INV200]
 gi|302598990|gb|EFL66019.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS455]
 gi|302635751|gb|EFL66256.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638108|gb|EFL68584.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP-BS293]
 gi|302640628|gb|EFL71029.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS458]
 gi|302642991|gb|EFL73287.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS457]
 gi|306484659|gb|ADM91528.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae 670-6B]
 gi|332076131|gb|EGI86597.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA41301]
 gi|332077265|gb|EGI87727.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA17545]
 gi|332204858|gb|EGJ18923.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA47901]
          Length = 647

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|332202708|gb|EGJ16777.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA41317]
          Length = 647

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS   F Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTVFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|73916358|gb|AAZ93047.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLVAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|317131014|ref|YP_004090328.1| DNA gyrase, B subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468993|gb|ADU25597.1| DNA gyrase, B subunit [Ethanoligenens harbinense YUAN-3]
          Length = 642

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 274/586 (46%), Positives = 381/586 (65%), Gaps = 8/586 (1%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++N    +N  Y AD IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DNAIDE+L
Sbjct: 1   MNENQLEPENKDYGADQIQVLEGLEAVRKRPGMYIGST-GSPGLHHLVYEIVDNAIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I V +  +    V+D+GRGIP  +H + GI A  V+ T LHAGGKF    YKVS
Sbjct: 60  AGYCHNIHVEILPENVIRVTDDGRGIPVGIHPKMGIPAVTVVFTMLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS WL++ +  EG +Y+  +  G     L + G      G+ +TF P
Sbjct: 120 GGLHGVGASVVNALSEWLEVEVAHEGKLYQQRYERGTPVTKLEIVGDTDRV-GSIITFKP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             +IF    ++YD +  RLRE +FLN+ ++I L DKR P  R  ++ Y+GGI  FV Y+ 
Sbjct: 179 DCEIFETCVYDYDIILARLREQAFLNAGIRIVLEDKREPGGRNDSLCYEGGIREFVQYVH 238

Query: 238 --RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             +    L    I    S +    ++A+++ND Y+E +  F N+I   +GGTH +G +SA
Sbjct: 239 KRKGLTALHPDVIYFSASAETSMAEVALQYNDSYNEVIYSFANDIHTVEGGTHETGFKSA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR    Y  K    K     + G+D REG T+V+S+K+ +  F  QTK KL ++E+R +
Sbjct: 299 LTRVFNDYGRKYNILKDSDSKLSGEDVREGLTAVISVKLEEALFEGQTKAKLGNTEMRQL 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+  + D L  + EE+P  A+ I  K L A+  R+AAR+ARDL+RRK  LD ASLPGKLA
Sbjct: 359 VDGMLYDKLMTYFEENPAVARSIFDKALAANRAREAARKARDLSRRKSALDSASLPGKLA 418

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS++D   +E+++VEGDSAGGSAK+GR R+ QAILPL GK+LNVE+AR D++  ++++ 
Sbjct: 419 DCSDKDNTYTEIYIVEGDSAGGSAKEGRDRKFQAILPLWGKMLNVEKARLDRVYGNEKLM 478

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            ++TALGTGIG+D FDI+KLRY KIIIM DADVDG+HIRTLLLTFFFR M  LI  G +Y
Sbjct: 479 PVVTALGTGIGED-FDISKLRYGKIIIMADADVDGSHIRTLLLTFFFRFMRPLIEEGHIY 537

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           I +PPL+ I++GK   Y   ++  +  +       +I+ +     +
Sbjct: 538 IAQPPLFKISKGKKSVYAFSDKERDTAIAEMGGKCDIQRYKGLGEM 583



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 125/366 (34%), Gaps = 31/366 (8%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD--VDGAHIRTLLLTFFFRQM 525
             ++           TG       +      K  I+ D+D  + G  +R  L      ++
Sbjct: 278 SFANDIHTVEGGTHETGFKSALTRVFNDYGRKYNILKDSDSKLSGEDVREGLTAVISVKL 337

Query: 526 PSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
              +  G     +    +  +  G     +         +      + +      +    
Sbjct: 338 EEALFEGQTKAKLGNTEMRQLVDGMLYDKLMTYFEENPAVARSIFDKALAANRAREAARK 397

Query: 584 KNDLRNFIDDALKIDKLIK-----DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
             DL              K     D    + + +I +   +G    E       ++    
Sbjct: 398 ARDLSRRKSALDSASLPGKLADCSDKDNTYTEIYIVEGDSAGGSAKEGRDRKFQAILPLW 457

Query: 639 ANRLNFIAEKSEKSWH-----------GSINNSDILVKRIARG---------VQEQFVLE 678
              LN    + ++ +            G+    D  + ++  G         V    +  
Sbjct: 458 GKMLNVEKARLDRVYGNEKLMPVVTALGTGIGEDFDISKLRYGKIIIMADADVDGSHIRT 517

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738
               F F      I    I      +  +      +           I  +G K   +QR
Sbjct: 518 LLLTFFFRFMRPLIEEGHIYIAQPPLFKISKGKKSVYAFSDKERDTAIAEMGGK-CDIQR 576

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT+NPD R++LRV + DA+ AD++F+ LMGD+VEPRREFI+ N+  
Sbjct: 577 YKGLGEMDPIQLWETTMNPDGRTILRVDMEDAAAADEIFTILMGDKVEPRREFIEVNAGK 636

Query: 799 S-ALDI 803
              LD+
Sbjct: 637 VRELDV 642


>gi|284010227|dbj|BAI66713.1| DNA gyrase B [Borrelia sp. Tick98M]
          Length = 625

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/576 (47%), Positives = 399/576 (69%), Gaps = 6/576 (1%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           +LKGL+AV+KRP MYIG     +GLHH++YE++DN+IDE+L G+ D I V +N D S TV
Sbjct: 1   VLKGLEAVRKRPGMYIGSVS-INGLHHLVYELIDNSIDEALGGFCDKIEVIINSDNSITV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
           SDNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVVNALSS+L+
Sbjct: 60  SDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + + R+G ++  +F  GI  + + + G +    GT VTFL  S+IF   +++++TL  RL
Sbjct: 120 VFVYRDGKVFRQTFSRGISTSEVDIVGESS-SRGTRVTFLADSEIFETLEYSFETLSRRL 178

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           REL+FLN  +QIS+ D+R  E R +  +Y+GGI+AFV YL  + K +   P  I+G  + 
Sbjct: 179 RELAFLNDKLQISIEDRRLEEKRFLEFYYEGGIKAFVDYLTNNSKSIQSGPYFIEGISEE 238

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           + + + ++W +GY EN+L F NNI  +DGGTH++G RS L + +    ++S  SKKD  +
Sbjct: 239 VIVTVGLKWTEGYSENILSFVNNIKTQDGGTHVAGFRSGLFKAMNEAYKRSKISKKDVPN 298

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           +  DD +EG T+V+SIK+P+P+F  QTK KL +S V+ +V++   DGL   ++++PLE +
Sbjct: 299 LTLDDFKEGLTAVVSIKLPEPQFEGQTKGKLGNSYVKKIVDTITYDGLLKVVDDNPLEVE 358

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           II  K + A+  R+AAR+AR+  R+K   +  +LPGKLADC+ ++P + E+++VEGDSAG
Sbjct: 359 IIFDKAIKAARAREAARKARESERKKSTFESLALPGKLADCASKNPIEREIYIVEGDSAG 418

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR+R  QAILPL GK+LNVE+ R DK++++ ++  +I +LG G+G+  F I +LR
Sbjct: 419 GSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT-FCIERLR 477

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556
           YHK+IIM DADVDG+HIRTLLLTFFFR M  LI N  +YI  PPLY +     + Y  D+
Sbjct: 478 YHKVIIMADADVDGSHIRTLLLTFFFRYMRDLIENSHVYIAMPPLYKVKSENRVHYFYDD 537

Query: 557 ESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589
              E +L +       +         G ++   L  
Sbjct: 538 LEKESFLESIESEKRDKVNLQRYKGLGEMNPTQLWE 573



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 72/130 (55%), Gaps = 8/130 (6%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP------CSLLDTIFSIGRKGI 734
            + +F  +Y R                    +   +          S L++I S  R  +
Sbjct: 497 LLLTFFFRYMRDLIENSHVYIAMPPLYKVKSENR-VHYFYDDLEKESFLESIESEKRDKV 555

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMN +QLWETT+NPDTR +  V I D+ QA+ +F  LMGD+VEPRREFI++
Sbjct: 556 NLQRYKGLGEMNPTQLWETTMNPDTRKMKLVGIDDSMQAERIFVTLMGDDVEPRREFIEQ 615

Query: 795 NSLP-SALDI 803
           N+L    LD+
Sbjct: 616 NALDVVNLDV 625


>gi|260589534|ref|ZP_05855447.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583]
 gi|260540102|gb|EEX20671.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583]
          Length = 640

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/621 (39%), Positives = 357/621 (57%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YDA SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY   I 
Sbjct: 3   KKNTYDASSITVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCKNIR 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGS T+ D+GRGIP  +H++ G+SA  ++ T LHAGGKF+   YK SGGLHGVG 
Sbjct: 62  VTLEKDGSATIEDDGRGIPVGMHEK-GMSAERLVFTTLHAGGKFDDSVYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS++L +++   G I+   +  GI   PL        G     TGT + FLP  +
Sbjct: 121 SVVNALSAFLDIKVSTGGYIHHDHYERGIPTIPLEDGLLPKLGRTK-TTGTCINFLPDDE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+   ++ RL E ++LN  + I   D R  EP EI      GI  F+  L++  
Sbjct: 180 IFEKTRFSSTEVKSRLHETAYLNPELTILFQDNRGTEPEEIVFHEPDGIVGFIKDLNKKS 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +   P+  +G  D I++++A ++ + + ENVL F NNI   +GGTHL+G ++  T  +
Sbjct: 240 ECIH-EPVYFKGESDGITVEVAFQYVNEFRENVLGFCNNIYNSEGGTHLTGFKTTFTSVM 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y  +    K+   +  G D R G T+V+SIK P PRF  QTK KL + +         
Sbjct: 299 NTYARELGILKEKDSNFTGADVRNGMTAVVSIKHPAPRFEGQTKTKLDNQDASKATGKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + +  + + +    K ++     ++ +R    +A+     K      S  GKL++C +R
Sbjct: 359 GEEIVLYFDRNLDVLKSVLACAEKSAKIRKTEEKAKTNLLTKQKYSFDS-NGKLSNCEKR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DPSLCEIFIVEGDSAGGSAKSARDRSFQAILPIRGKILNVEKATIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY+KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI 
Sbjct: 478 FGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 537

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY         +Y+ D+++LE Y      S  ++ +     + ++      ++   +
Sbjct: 538 MPPLYKAMPTKGKEEYLYDDKALEKYRRTHKGSFTLQRYKGLGEMDAQQLWETTLNPETR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           + +L++           E  +
Sbjct: 598 MLRLVEIEDARMASEVTEILM 618



 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 732 KG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           KG  ++QRYKGLGEM+A QLWETTLNP+TR L  V+I DA  A ++   LMG EV PR+ 
Sbjct: 568 KGSFTLQRYKGLGEMDAQQLWETTLNPETRMLRLVEIEDARMASEVTEILMGTEVPPRKA 627

Query: 791 FIQENSLPSALDI 803
           FI E++  + LDI
Sbjct: 628 FIYEHARDAQLDI 640


>gi|237650389|ref|ZP_04524641.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CCRI 1974]
 gi|237822238|ref|ZP_04598083.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CCRI
           1974M2]
 gi|73916450|gb|AAZ93093.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916466|gb|AAZ93101.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|73916364|gb|AAZ93050.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916380|gb|AAZ93058.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|156888535|gb|ABU96672.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888539|gb|ABU96674.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 621

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/617 (44%), Positives = 394/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFATH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV DNGRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IQVFIEADNSITVVDNGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF+
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K   +I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++        ++  +  +L  E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYIQPGIEQEEQLKTAL--EKYSVGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 15/241 (6%)

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF--CDSKGVISKNDLRNFIDD 593
           I       +TR KS   + +         +   S+        DS G  +K+        
Sbjct: 394 IAAKRAREVTRKKSGWEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQA 453

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L I   I +         +    I  +F             SK   +   I   ++   
Sbjct: 454 ILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDG 513

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                    L+ R  R V E   +  +    +G K        I+        L    +K
Sbjct: 514 AHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEK 573

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +             GR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++A
Sbjct: 574 YSV-------------GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEA 620

Query: 774 D 774
           D
Sbjct: 621 D 621


>gi|227831835|ref|YP_002833542.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975]
 gi|262183099|ref|ZP_06042520.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975]
 gi|227452851|gb|ACP31604.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975]
          Length = 681

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 277/687 (40%), Positives = 399/687 (58%), Gaps = 50/687 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +YDA SI IL+GL+AV+KRP MYIG T G  GLHH+I+E++DN++DE++ GY
Sbjct: 1   MAEQ---HAYDAGSITILEGLEAVRKRPGMYIGST-GARGLHHLIWEIVDNSVDEAMAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD + VTL  DG   V DNGRGIP ++H   G+   +V+MT+LHAGGKF+ +SY VSGGL
Sbjct: 57  ADKVIVTLREDGGIEVIDNGRGIPVEMHAS-GVPTVQVVMTQLHAGGKFDSESYAVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IKR+G  +  +F N I D  +   G     TGT + F P  +
Sbjct: 116 HGVGISVVNALSTRVEADIKRDGKHWYQNFNNAIPDELVE--GDNARGTGTTIRFWPDPE 173

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------- 214
           IF   +FNYDT+  RL+E++FLN  + I L D+R                          
Sbjct: 174 IFETVEFNYDTIARRLQEMAFLNKGLTIVLRDERAISKEQAELEEIAEAGDSAVSLTSLD 233

Query: 215 ---------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
                          + + +E+T  Y  G++ +V +L+++K  +  + +      ++  +
Sbjct: 234 EKEKSEEAGDGSEEKTSKKKEVTYHYPNGLQDYVEHLNKNKTAIHPTIVAFDVKGEDHEV 293

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A++WN GY ++V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ G
Sbjct: 294 EIALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLKEKDGNLSG 353

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DDCREG  +V+S+K+ DP+F  QTK KL +SE+R  V+  VN+ L+ W + +P EAK+I+
Sbjct: 354 DDCREGLAAVISVKVADPQFEGQTKTKLGNSEIRGFVQRSVNEHLNDWFDANPAEAKVII 413

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K + ++  R AAR+AR+L RRK   D+  LPGKLADC  +D K++EL++VEGDSAGGSA
Sbjct: 414 NKAVSSAHARVAARKARELVRRKSAGDLGGLPGKLADCRSKDSKRTELYIVEGDSAGGSA 473

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           K GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI ++ FDI+KLRY K
Sbjct: 474 KGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEE-FDISKLRYDK 532

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEES 558
           I++M DADVDG HI TLLLT  FR MP L+ +G +++  PPLY +  GK    Y   +  
Sbjct: 533 IVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWGKGQPGYAFSDAE 592

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
            ++ L             D           N  +                D    ++A  
Sbjct: 593 RDEQLAEGLEQGRKINKDDGIQRYKGLGEMNAAELWETTLDPTTRVLRRVDLEDAQRADE 652

Query: 619 SGVFNCESDQEINVSLASKLANRLNFI 645
                   D     S  ++ A  + F+
Sbjct: 653 LFSILMGDDVAARRSFITRRAKDVRFL 679



 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 56/82 (68%), Gaps = 6/82 (7%)

Query: 727 FSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
              GRK I+    +QRYKGLGEMNA++LWETTL+P TR L RV + DA +AD+LFS LMG
Sbjct: 601 LEQGRK-INKDDGIQRYKGLGEMNAAELWETTLDPTTRVLRRVDLEDAQRADELFSILMG 659

Query: 783 DEVEPRREFIQENSLPSA-LDI 803
           D+V  RR FI   +     LD+
Sbjct: 660 DDVAARRSFITRRAKDVRFLDV 681


>gi|55820667|ref|YP_139109.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMG
           18311]
 gi|55736652|gb|AAV60294.1| DNA topoisomerase IV (subunit B) [Streptococcus thermophilus LMG
           18311]
          Length = 649

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 276/652 (42%), Positives = 399/652 (61%), Gaps = 17/652 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D+I VTLN DGS +VSD+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDVIAVTLNKDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G++Y   F N G     L   G A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF ++T+  RL+E +FL  +V ++L D R  E       Y+ G++ FVSYL+
Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I I G + +  ++LA+++NDGY +N+L F NN+  KDGG+H +G +SA+T
Sbjct: 239 EDKETLTP-VIYIDGDQQDFHLELALQYNDGYSDNILSFVNNVRTKDGGSHETGFKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           +    Y  K+   K+  +++ G D REG ++V+S+ +P+   +F  QTK+KL S   R +
Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413
           V+  V++ L+ +L E+   A  +V+K + A   R+AAR+ARD     +K   D   L GK
Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590
           +YI  PPLY +++GK  + V +    +  L           +       G ++ + L   
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWET 596

Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
               +    I   I D      +  +     +       +  +  +L    A
Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEETTA 648



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       ++    N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K ++    
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEVVEYA 560

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     +G  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 621 SVLMGDKAAPRRQWIEDN 638


>gi|331266192|ref|YP_004325822.1| DNA topoisomerase IV subunit B [Streptococcus oralis Uo5]
 gi|326682864|emb|CBZ00481.1| DNA topoisomerase IV subunit B [Streptococcus oralis Uo5]
          Length = 647

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 279/655 (42%), Positives = 397/655 (60%), Gaps = 23/655 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+ A + TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLQKVGTAAKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DASIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTEEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R +
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPI 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V + L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+    Q             G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELR-KQFGKGATLQRYKGLGEMNADQLWE 593

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                  ++   +       +          V   +  +     +   +   L  
Sbjct: 594 T-----TMNPETRTLIRVTIEDLASAERRVNVLMGDKVEPRRKWIEDNVKFTLEE 643



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D + A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLASAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|331082962|ref|ZP_08332082.1| hypothetical protein HMPREF0992_01006 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399957|gb|EGG79615.1| hypothetical protein HMPREF0992_01006 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 640

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 244/621 (39%), Positives = 356/621 (57%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YDA SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L GY   I 
Sbjct: 3   KKNTYDASSITVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCKNIR 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGS T+ D+GRGIP  +H++ G+SA  ++ T LHAGGKF+   YK SGGLHGVG 
Sbjct: 62  VTLEKDGSATIEDDGRGIPVGMHEK-GMSAERLVFTTLHAGGKFDDSVYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180
           SVVNALS++L +++   G I+   +  GI   PL        G     TGT + FLP  +
Sbjct: 121 SVVNALSAFLDIKVSTGGYIHHDHYERGIPTIPLEDGLLPKLGRTK-TTGTCINFLPDDE 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+   ++ RL E ++LN  + I   D R  E  EI      GI  F+  L++  
Sbjct: 180 IFEKTRFSSTEVKSRLHETAYLNPELTILFQDNRGVESEEIVFHEPDGIVGFIKDLNKKS 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +   P+  +G  D I++++A ++ + + ENVL F NNI   +GGTHL+G ++  T  +
Sbjct: 240 ECIH-EPVYFKGESDGITVEVAFQYVNEFRENVLGFCNNIYNSEGGTHLTGFKTTFTSVM 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y  +    K+   +  G D R G T+V+SIK P PRF  QTK KL + +         
Sbjct: 299 NTYARELGILKEKDSNFTGADVRNGMTAVVSIKHPAPRFEGQTKTKLDNQDASKATGKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + +  + + +    K ++     ++ +R    +A+     K      S  GKL++C +R
Sbjct: 359 GEEIVLYFDRNLDVLKSVLACAEKSAKIRKTEEKAKTNLLTKQKYSFDS-NGKLSNCEKR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP   E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DPSLCEIFIVEGDSAGGSAKSARDRSFQAILPIRGKILNVEKATIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY+KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI 
Sbjct: 478 FGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 537

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY         +Y+ D+++LE Y      S  ++ +     + ++      ++   +
Sbjct: 538 MPPLYKAMPTKGKEEYLYDDKALEKYRRTHKGSFTLQRYKGLGEMDAQQLWETTLNPETR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
           + +L++           E  +
Sbjct: 598 MLRLVEIEDARMASEVTEILM 618



 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 732 KG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           KG  ++QRYKGLGEM+A QLWETTLNP+TR L  V+I DA  A ++   LMG EV PR+ 
Sbjct: 568 KGSFTLQRYKGLGEMDAQQLWETTLNPETRMLRLVEIEDARMASEVTEILMGTEVPPRKA 627

Query: 791 FIQENSLPSALDI 803
           FI E++  + LDI
Sbjct: 628 FIYEHARDAQLDI 640


>gi|289167743|ref|YP_003446012.1| DNA topoisomerase IV, subunit B [Streptococcus mitis B6]
 gi|288907310|emb|CBJ22146.1| DNA topoisomerase IV, subunit B [Streptococcus mitis B6]
          Length = 649

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVKDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|73916368|gb|AAZ93052.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A++ NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQHNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|15900737|ref|NP_345341.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae TIGR4]
 gi|111657635|ref|ZP_01408368.1| hypothetical protein SpneT_02001165 [Streptococcus pneumoniae
           TIGR4]
 gi|19864342|sp|Q59961|PARE_STRPN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|14972325|gb|AAK74981.1| topoisomerase IV, subunit B [Streptococcus pneumoniae TIGR4]
 gi|73916354|gb|AAZ93045.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916386|gb|AAZ93061.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916462|gb|AAZ93099.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTNEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|322376402|ref|ZP_08050895.1| DNA topoisomerase IV, B subunit [Streptococcus sp. M334]
 gi|321282209|gb|EFX59216.1| DNA topoisomerase IV, B subunit [Streptococcus sp. M334]
          Length = 647

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGEVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTIDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|15902800|ref|NP_358350.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae R6]
 gi|116516535|ref|YP_816236.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae D39]
 gi|15458350|gb|AAK99560.1| Topoisomerase IV subunit B [Streptococcus pneumoniae R6]
 gi|116077111|gb|ABJ54831.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae D39]
          Length = 647

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 393/623 (63%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A  + TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|1052804|emb|CAA58771.1| DNA gyrase B subunit [Streptococcus pneumoniae]
          Length = 648

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 276/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP  + ++ G  A E + T LH+GGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVGIQEKTGRPAVETVFTVLHSGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+SVVNALS+ L + + + G I+   +  G +   L + G   + TGT V F P
Sbjct: 120 GGLHGVGLSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTP 178

Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              IF+    F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I SY  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINSYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +
Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI
Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD   
Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
            +  +   +    +  ++ A  +   
Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621



 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648


>gi|73916378|gb|AAZ93057.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +  +SL DKRS E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNATLSLTDKRSDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|73916360|gb|AAZ93048.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916432|gb|AAZ93084.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 279/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKRS E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRSDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|307278016|ref|ZP_07559100.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0860]
 gi|306505413|gb|EFM74599.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0860]
          Length = 685

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 270/664 (40%), Positives = 386/664 (58%), Gaps = 16/664 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+  D S  V+D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+G  Y   F + G     L   G      GT VTFLP  
Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  +F+Y+ L  RLRE +FL   V+I+L D R  E +E    Y+ GI+ FV+YL+  
Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDGRGEELKEEVFHYEEGIKEFVAYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G+++ I ++LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+ 
Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTK KL +   R+VV+
Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V + +  +L+E+   ++ +++K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY +++G   + V       +Y        E+        ++ +      ++   
Sbjct: 536 IALPPLYKVSKGTGKKSVI------EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQ 589

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
             +  +        +  I+ A  +         +        +   + F  E+       
Sbjct: 590 LWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDR 649

Query: 656 SINN 659
           S  +
Sbjct: 650 SEED 653



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 378 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 498 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 558 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 618 TTLMGDKVEPRRKWIEQH 635


>gi|268316832|ref|YP_003290551.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
 gi|262334366|gb|ACY48163.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
          Length = 648

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/617 (39%), Positives = 357/617 (57%), Gaps = 14/617 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    ++Y    IQ+L+GL+ V+KRP MYIG T G+ GLHH+++E++DNA+DE++ G+
Sbjct: 1   MAE--LAATYTGKDIQVLEGLEPVRKRPGMYIGGT-GKPGLHHLLWEIVDNAVDEAVNGF 57

Query: 61  ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           A +I VTL+ DG S TV+DNGRGIP D H  + I   E+I+T LHAGGKF++K+Y  SGG
Sbjct: 58  ASLIEVTLHADGRSVTVTDNGRGIPVDPHPVKKIPTLELILTTLHAGGKFDRKNYITSGG 117

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS  L   +KR+G  Y+  F+ G     L V       TGT + F P  
Sbjct: 118 LHGVGASVVNALSEELVATVKRDGKTYQQRFVRGKPKTKLKVVAENTRGTGTSIYFRPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF   +F+   ++  L   ++LN +++I   D+ S E       ++GGI  +++ L   
Sbjct: 178 EIFETTEFDPVWIREHLEIKTYLNRNLKIVFKDETSGER--YEFHHEGGIVEYLARLVEE 235

Query: 240 KKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +        P  +     RD   +++A++W +   E +  F N IP  +GGTH  G + A
Sbjct: 236 QGARVVHPEPFVLIQEELRDGARLEVALQWTEAPRELIKSFVNGIPTTEGGTHEQGFKEA 295

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +   + +Y+E      ++   V  DD REG  +V+++ M +P+F  QTKEKL + E RS+
Sbjct: 296 VRSAVRAYMETHDLLPRN-LEVTADDIREGLVAVVNLFMVEPQFQGQTKEKLNNPEARSL 354

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV-LDIASLPGKL 414
           V   V   L  +L  HP  A+ IV +++ A+  R A+R A    RR+       +LPGKL
Sbjct: 355 VIGAVRLDLEQFLNAHPTMAEAIVARIIQAAKARLASRAAARSVRRQSSVSHRLNLPGKL 414

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+  +P++ ELF+VEGDSAGGSAKQ R R  QA+LPLRGK+LN E+A   K+  ++E+
Sbjct: 415 ADCTSTNPEECELFIVEGDSAGGSAKQARDRRFQAVLPLRGKVLNAEQASLRKVEENKEL 474

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG GIG    D+++LRYHKII++ DAD DG HI TLLLTFF+R M  LI NG +
Sbjct: 475 SNIVQALGCGIGDKI-DLSRLRYHKIILLMDADSDGHHITTLLLTFFYRYMRPLIENGHV 533

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ +PPLY I  GK   +  D+   +  L       +       +       + + + + 
Sbjct: 534 YVAQPPLYRIDAGKETYWALDDADRDRILQELRKKRKNVQVEIQRFKGLGEMMPDTLRE- 592

Query: 595 LKIDKLIKDFYPNHDKT 611
             +D   +         
Sbjct: 593 TTLDPRKRRLLRVEIPE 609



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKG-----I 734
            + +F  +Y R                  +  K           D I    RK      +
Sbjct: 515 LLLTFFYRYMRPLIENGHVYVAQPPLYRIDAGKETYWALDDADRDRILQELRKKRKNVQV 574

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI-TDA-SQADDLFSRLMGDEVEPRREFI 792
            +QR+KGLGEM    L ETTL+P  R LLRV+I  DA    +   + LMG +V  R  FI
Sbjct: 575 EIQRFKGLGEMMPDTLRETTLDPRKRRLLRVEIPEDARLLTEQTITELMGRDVSARFRFI 634

Query: 793 QENSLPS---ALDI 803
            EN+      ALD+
Sbjct: 635 MENAAQVDAEALDV 648


>gi|327440233|dbj|BAK16598.1| type IIA topoisomerase, B subunit [Solibacillus silvestris StLB046]
          Length = 657

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 269/667 (40%), Positives = 385/667 (57%), Gaps = 16/667 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  N    SY+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MVKNQTGISYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ D S +V D+GRG+PT +H + G    E+I T LHAGGKF Q  YK SGGL
Sbjct: 60  GNHIIVKIHEDNSISVRDHGRGMPTGMH-KMGKPTPEIIFTILHAGGKFGQGGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSS+L++ I R+  IY   F   G     L + G    +TGT V FLP  
Sbjct: 119 HGVGSSVVNALSSFLEVTIYRDNQIYRQRFEQGGKPATSLDMIGKTK-ETGTLVHFLPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFSV  +NYDTL  RLRE +FL   ++I LID R  E +    +Y+ GIEAFV+YL+  
Sbjct: 178 SIFSVIKYNYDTLAERLRESAFLLKGLKIELIDAR-GEGQHEIFYYENGIEAFVTYLNEE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L      ++G+   I ++ A+++NDGY E +L F NN+  +DGGTH +G ++ALTR 
Sbjct: 237 KDVLHP-VKYVEGTIQEIEVEFALQFNDGYSETILSFVNNVRTRDGGTHETGAKTALTRV 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG T+++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 296 FNEYARKIGLLKEKDKNLEGTDIREGLTAIVSVRIPENLLQFEGQTKGKLGTSEARSAVD 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416
           + V++ L   LEE+   +  +V+K + A  VR+AAR+ARD  R  K       L GKL  
Sbjct: 356 TVVSEQLMYVLEENAELSASLVRKAIRAQQVREAARKARDDARNGKKRKSSTLLSGKLTP 415

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++  ++EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   ++ ++EI T
Sbjct: 416 AQSKNASRNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEIAT 475

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I  +G G+G D F +    Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G +YI
Sbjct: 476 IIHTIGAGVGAD-FSVEDAAYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYI 534

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
             PPLY +++G        ++    Y   +              +I +      ++    
Sbjct: 535 ALPPLYKVSKGS------GKKQELMYAWTEQELSAATKKIGKGYIIQRYKGLGEMNADQL 588

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
            D  +        +  IE    +         +        + + +NF  E+        
Sbjct: 589 WDTTMNPETRTLIRVKIEDGARAERRITTLMGDKVEPRRKWIESNVNFGMEEDASILENE 648

Query: 657 INNSDIL 663
               + +
Sbjct: 649 FIQHEEV 655



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++A  ++ I       +       D +V           +    
Sbjct: 456 VINTEKAKLQDIMKNEEIATIIHTIGAGVGADFSVEDAAYDKVVIMTDADTDGAHIQVLL 515

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I + ++      +  +    G K ++        L      IG KG  +
Sbjct: 516 LTFFYRYMRPLIEAGKVYIALPPLYKVSKGSGKKQELMYAWTEQELSAATKKIG-KGYII 574

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QRYKGLGEMNA QLW+TT+NP+TR+L+RVKI D ++A+   + LMGD+VEPRR++I+ N
Sbjct: 575 QRYKGLGEMNADQLWDTTMNPETRTLIRVKIEDGARAERRITTLMGDKVEPRRKWIESN 633


>gi|168484709|ref|ZP_02709661.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042106|gb|EDT50152.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|332204006|gb|EGJ18073.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA47368]
          Length = 647

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVAIQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|221231635|ref|YP_002510787.1| topoisomerase IV subunit B [Streptococcus pneumoniae ATCC 700669]
 gi|73916416|gb|AAZ93076.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916420|gb|AAZ93078.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916422|gb|AAZ93079.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916428|gb|AAZ93082.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916430|gb|AAZ93083.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916444|gb|AAZ93090.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916446|gb|AAZ93091.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|220674095|emb|CAR68613.1| topoisomerase IV subunit B [Streptococcus pneumoniae ATCC 700669]
          Length = 647

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 276/623 (44%), Positives = 390/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG   VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|156888541|gb|ABU96675.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888543|gb|ABU96676.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888545|gb|ABU96677.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 621

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 276/617 (44%), Positives = 395/617 (64%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFATH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV DNGRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IQVFIEADNSITVVDNGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF+
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K+ 
Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKEV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +  +PI   G  + I++++AM++   YHE V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFDTPIYTDGELEGIAVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRTALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K   +I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++        ++  +  +L  E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYIQPGIEQEEQLKTAL--EKYSVGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 15/241 (6%)

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF--CDSKGVISKNDLRNFIDD 593
           I       +TR KS   + +         +   S+        DS G  +K+        
Sbjct: 394 IAAKRAREVTRKKSGWEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQA 453

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
            L I   I +         +    I  +F             SK   +   I   ++   
Sbjct: 454 ILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDG 513

Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
                    L+ R  R V E   +  +    +G K        I+        L    +K
Sbjct: 514 AHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEK 573

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +             GR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++A
Sbjct: 574 YSV-------------GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEA 620

Query: 774 D 774
           D
Sbjct: 621 D 621


>gi|319757988|gb|ADV69930.1| topoisomerase IV subunit B [Streptococcus suis JS14]
          Length = 647

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/623 (43%), Positives = 389/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHHM++E++DNA+DE+L G
Sbjct: 1   MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS +VSD GRG+P  +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLSVSDRGRGMPVGMHA-TGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F   G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V ++L D+R+ E  +    Y+ G++ FVSYL+
Sbjct: 179 DDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGE--QEEYHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +AM++NDGY +N+L F NN+  KDGGTH +GL+ A+T
Sbjct: 237 EDKETLTPVL-YFEGEDAGFQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V+D L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGSD-FTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            YI  PPLY +++G    + + Y   +  LED   +      ++ +     + +      
Sbjct: 535 GYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI-----CNGDKIKITGPCSLLDTIFSIGRKGIS 735
            + +F  +Y R                         +KI        L+ +     KG  
Sbjct: 517 LLLTFFYRYMRPLVEAGRGYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFI 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   S LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVSVLMGDKVEPRRKWIEDN 636


>gi|168056555|ref|XP_001780285.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668339|gb|EDQ54949.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 640

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 270/587 (45%), Positives = 370/587 (63%), Gaps = 15/587 (2%)

Query: 16  QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCT 75
           Q+L+GL+AV+KRP MYIG T G  GLHH++YEVLDNAIDE+  G+A  + V ++ DGS +
Sbjct: 2   QVLEGLEAVRKRPGMYIGST-GTKGLHHLVYEVLDNAIDEAQAGFASTVDVVIHTDGSVS 60

Query: 76  VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVGVSVVNALSS 133
           +SDNGRGIPTD+H     SA E ++T LHAGGKF  +S  Y VSGGLHGVG+SVVNALS 
Sbjct: 61  ISDNGRGIPTDVHPVTRKSALETVLTVLHAGGKFGGESSGYSVSGGLHGVGISVVNALSE 120

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSSD----IFSVQD 186
            + + + R G+ Y  SF  G   +PL            TGT V FLP         S  +
Sbjct: 121 RVDVTVWRNGHEYRQSFEFGKAVSPLSAFPLPNDQKGRTGTRVKFLPDKQGKQLFTSTTE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
           F+Y+T+  R REL+FLN  V I+L+ +   S + R     + GG+  +V +L+  K+ L 
Sbjct: 181 FDYNTISGRARELAFLNPQVTINLMQEHANSEKVRSNAYHFSGGLNEYVLWLNNDKERLH 240

Query: 245 QSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             PI I   R+ ++ID+A++W+ D Y + +L + N+I   DGGTHL G+++A+TR + + 
Sbjct: 241 -EPISIHREREGVAIDVALQWSADQYTDTILGYANSIRTSDGGTHLDGMKAAVTRTLNTL 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K+   ++ GD  REG T V+++K+P+P F  QTK +L + EVR +V+  V + 
Sbjct: 300 GRKAKILKEKDENLSGDHAREGLTCVVAVKVPNPEFEGQTKTRLGNPEVRRIVDQAVQEL 359

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           ++ +LE+HP   + I+ K L A     AA++AR+L RRK VL  + LPGKL+DCS  DP+
Sbjct: 360 VTEYLEQHPNTLEAILSKALQAFRAAMAAKKARELVRRKNVLKSSMLPGKLSDCSCTDPR 419

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +E+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     +  +QEI  LI ALG 
Sbjct: 420 NAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDDAAIYKNQEIQNLILALGL 479

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+  + F  + LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L   G +Y+  PPLY 
Sbjct: 480 GVKGEEFSKDSLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEAGCIYVGVPPLYK 539

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           + RGK   Y  +E  L++ L     +           G +    L  
Sbjct: 540 VERGKQAHYCFNESDLKNVLKTFPSNASYNIQRFKGLGEMMPQQLWE 586



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 9/189 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           + N E   +  +    ++ N +  +    K E+    S+    I++      V    +  
Sbjct: 453 ILNIERKDDAAIYKNQEIQNLILALGLGVKGEEFSKDSLRYHKIIIL-TDADVDGAHIRT 511

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQ 737
               F F  +     +  I      +  +              L + + +       ++Q
Sbjct: 512 LLLTFFFRYQRALFEAGCIYVGVPPLYKVERGKQAHYCFNESDLKNVLKTFPSNASYNIQ 571

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS- 796
           R+KGLGEM   QLWETTL+P  R L  + + DA++A  +FS LMGD+VEPR+E I+ N+ 
Sbjct: 572 RFKGLGEMMPQQLWETTLDPQQRMLKLLTLEDAAEASMMFSTLMGDKVEPRKELIRTNAS 631

Query: 797 ---LPSALD 802
              L   LD
Sbjct: 632 RMKLE-NLD 639


>gi|312869074|ref|ZP_07729248.1| DNA topoisomerase IV, B subunit [Lactobacillus oris PB013-T2-3]
 gi|311095320|gb|EFQ53590.1| DNA topoisomerase IV, B subunit [Lactobacillus oris PB013-T2-3]
          Length = 658

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 274/660 (41%), Positives = 386/660 (58%), Gaps = 30/660 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       YD  SIQ+LKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MTTKKVK--YDESSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119
            D I VT+  D S TV D+GRG+P  +H   G    EVIMT LHAGGKF Q   YK SGG
Sbjct: 58  GDEINVTIEADNSITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQADGYKTSGG 116

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALS+ L L I R+   Y+  F N G     L   G    D+GT VTF P 
Sbjct: 117 LHGVGASVVNALSTNLTLTIVRDHVRYQEKFKNGGQPVGTLKKLGKTRADSGTTVTFKPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF+   ++Y+TL +RLRE +FL   ++I L DKR  + +E    +  GI+ FVSYL+ 
Sbjct: 177 PAIFTTTTYDYNTLANRLRESAFLLKGIKIVLTDKRPGQEQENVFQFNDGIQEFVSYLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  L ++     G    + +++A ++NDGY EN+L F NN+   DGGTH +G RSA T+
Sbjct: 237 GKDTLGKTL-YFDGKDQGVEVEVAAQYNDGYSENLLSFVNNVRTPDGGTHEAGFRSAWTK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y ++    K + +++ G D REG T+V+S+++P+   +F  QTK+KL + E R +V
Sbjct: 296 TFNEYAKRVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414
           ++ V++ L+  L E+   A+++++K L A   R+AAR+AR+  R  ++      +L GKL
Sbjct: 356 DTIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKSRKERNLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++  K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+
Sbjct: 416 TPAQSKNANKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEEL 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G G + FD+    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +
Sbjct: 476 NTIIYTVGAGAGSE-FDVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKV 534

Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN- 589
           YI  PPLY + +       + Y    + L   L  +             G ++ + L   
Sbjct: 535 YIALPPLYRLQQGKGAKTKITYAWTNDELTK-LTKRMGKTAQLQRFKGLGEMNADQLWET 593

Query: 590 ------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                        I+DA   ++ +     N  +   E    +  F    DQE +  +ASK
Sbjct: 594 TMNPETRTLIRVRIEDAELAERRVTTLMGNKVEPRREWIEENVQFTLSDDQESDELVASK 653



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++              +  +    S  +          ++   ++     
Sbjct: 378 IRKALKAREAREAARKARNQARGGKRKSRKERNLSGKLTPAQSKNANKNELFLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  +V    +L   +  +   +   +    +N 
Sbjct: 438 GSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFDVEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      I + ++      +  L    G K KIT  
Sbjct: 498 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVYIALPPLYRLQQGKGAKTKITYA 557

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     K   +QR+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   
Sbjct: 558 WTNDELTKLTKRMGKTAQLQRFKGLGEMNADQLWETTMNPETRTLIRVRIEDAELAERRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMG++VEPRRE+I+EN
Sbjct: 618 TTLMGNKVEPRREWIEEN 635


>gi|148988271|ref|ZP_01819718.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP6-BS73]
 gi|147925952|gb|EDK77026.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP6-BS73]
          Length = 647

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGENNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLIKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|256851678|ref|ZP_05557066.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661605|ref|ZP_05862517.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934238|ref|ZP_06339515.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|297205287|ref|ZP_06922683.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           jensenii JV-V16]
 gi|256615636|gb|EEU20825.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547662|gb|EEX23640.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301712|gb|EFA93979.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|297149865|gb|EFH30162.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           jensenii JV-V16]
          Length = 651

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 279/589 (47%), Positives = 392/589 (66%), Gaps = 5/589 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN IDE L G+A  
Sbjct: 13  EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDECLAGFATK 71

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+  DGS TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 72  IEVTVEEDGSVTVQDDGRGIPVDIQEKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIF 182
           G SVVNALS+ +++ + R+G  Y + F +G + + L   G+      GT V F P  DIF
Sbjct: 132 GASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKQIGTVDPGQHGTIVHFYPDPDIF 191

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +      D  L+ R++EL+FLN  ++++  DKR          Y+GGI+ +V++LD+ ++
Sbjct: 192 TETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKSSAETDVYHYEGGIKEYVAFLDKKEE 251

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L  +P+ ++G  D I++++A+++  GY   ++ F NNI   +GG H +G ++ALTR I 
Sbjct: 252 KLFDTPVYVEGDYDGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFKTALTRVIN 311

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+V+SIK P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 312 DYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFS 371

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 372 EAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANLPGKLADNTSND 431

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI TL TAL
Sbjct: 432 PEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 491

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FD+ K RYHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPL
Sbjct: 492 GTGFGAD-FDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYVYIARPPL 550

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y + +GK ++Y+  +E L DYL +   S +         G +S + L  
Sbjct: 551 YQVKQGKIIKYLDSDEELHDYLGSLQPSPKPTVQRYKGLGEMSADQLWE 599



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETT++P+ R L RV    A  AD +F  LMG+EV PRR+FI +
Sbjct: 582 TVQRYKGLGEMSADQLWETTMDPENRRLDRVDPAYAEDADAVFEMLMGNEVGPRRDFITK 641

Query: 795 NSLPS-ALD 802
           N+     LD
Sbjct: 642 NAKYVENLD 650


>gi|9955568|emb|CAC05495.1| DNA gyrase subunit B-like protein [Arabidopsis thaliana]
          Length = 760

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 263/627 (41%), Positives = 368/627 (58%), Gaps = 42/627 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   +  Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  GYA 
Sbjct: 82  ETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGYAS 140

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120
            + V L+ DGS +V DNGRGIPTDLH     S+ E ++T LHAGGKF   S  Y VSGGL
Sbjct: 141 KVDVVLHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGL 200

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ + R+G  ++ ++  G     L        +    GT + F P
Sbjct: 201 HGVGLSVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWP 260

Query: 178 SSD-------------------------------IFSVQDFNYDTLQHRLRELSFLNSSV 206
             +                                 +  +F+++T+  R+REL+FLN  V
Sbjct: 261 DKEGFACFPLLTTLPKPKLDLMINFPLWNELFSVFTTAIEFDHNTIAGRIRELAFLNPKV 320

Query: 207 QISLIDKRS--PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            ISL  +     + +     + GG+  +VS+L+  K P+       +   +  ++D+A++
Sbjct: 321 TISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLG-FRREINGATVDVALQ 379

Query: 265 WN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           W  D Y + +L + N+I   DGGTH+ G++++LTR + +  +KS   K+   S+ G+  R
Sbjct: 380 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVR 439

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T ++S+K+P+P F  QTK +L + EVR +V+  V + L+ +LE HP   + I+ K L
Sbjct: 440 EGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESIISKSL 499

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A     AA+RAR+L R K VL  +SLPGKLADCS  DP+ SE+F+VEGDSAGGSAKQGR
Sbjct: 500 NAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQGR 559

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            R  QAILPLRGKILN+ER     M  ++EI  LI  LG G+  + F    LRYHKIII+
Sbjct: 560 DRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIIIL 619

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TDADVDGAHIRTLLLTFFFR   +L   G +Y+  PPL+ + RGK+ QY  D+  L+   
Sbjct: 620 TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKIT 679

Query: 564 INQSLSEE-IELFCDSKGVISKNDLRN 589
            N   +           G +    L  
Sbjct: 680 SNFPANASYNIQRFKGLGEMMPEQLWE 706



 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 114/333 (34%), Gaps = 36/333 (10%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLEDY 562
           D  + G H+R  L      ++P+    G        P +  I      +Y+ +   L   
Sbjct: 430 DISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPD 489

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRN----------------------FIDDALKIDKL 600
           ++   +S+ +  +  +       +L                         + +   ++  
Sbjct: 490 ILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGD 549

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHG 655
                    +    QA++       + +  + +   K     N I       K E     
Sbjct: 550 SAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKE 609

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
           ++    I++      V    +      F F  +     +  I      +  +    +   
Sbjct: 610 NLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQY 668

Query: 716 ITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
                  L  I S        ++QR+KGLGEM   QLWETT+NP+TR L ++ + D ++A
Sbjct: 669 CYDDAD-LKKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEA 727

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803
           +  FS LMG  V+ R+E I+  +       LDI
Sbjct: 728 NMTFSSLMGARVDVRKELIKNAATRINLQRLDI 760


>gi|322411454|gb|EFY02362.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 650

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/617 (45%), Positives = 397/617 (64%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EEKAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFATH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV DNGRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IQVFIEADNSITVVDNGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P S+IF+
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDSEIFT 186

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K+ 
Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKEV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +  +PI   G  + I++++AM++   YHE V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFDTPIYTDGELEGIAVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRTALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++        ++  +  +L  E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYIQPGIEQEEQLKTAL--EKYSVGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 58/74 (78%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           GR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEPRR
Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRR 636

Query: 790 EFIQENSLPSALDI 803
           EFI+EN++ S LDI
Sbjct: 637 EFIEENAVYSTLDI 650


>gi|269314037|gb|ACZ36920.1| DNA gyrase B [Mycobacterium immunogenum]
          Length = 651

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 265/643 (41%), Positives = 377/643 (58%), Gaps = 37/643 (5%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA  + VT+ 
Sbjct: 1   YSADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATTVEVTML 59

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DG   V D+GRGIP  +H   GI   +V+MT+LHAGGKF+  SY VSGGLHGVG+SVVN
Sbjct: 60  ADGGIQVKDDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS+ ++L I R+G+ +   +   +    L   G+    TGT V F    +IF    +++
Sbjct: 119 ALSTKVELEILRDGHEWNQVYTASVP-GTLQQGGATK-KTGTTVRFWADPEIFETTTYDF 176

Query: 190 DTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEPR 219
           +T+  RL+E +FLN  + I L D+R                                + +
Sbjct: 177 ETVARRLQEQAFLNKGLTIKLTDERVSDSDVTDEVVRDTAEAPKTAEEQAAESAAPHKVK 236

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y  G+  FV +++R K  +  + +   G  +   +++AM+WN GY E+V  F N 
Sbjct: 237 NRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVEIAMQWNAGYSESVHTFANT 296

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +V+S+K+ +P+F
Sbjct: 297 INTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVGEPQF 356

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L  W + +P +AK +V K + ++  R AAR+AR+L 
Sbjct: 357 EGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKARELV 416

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 417 RRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIIN 476

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG HI TLLLT
Sbjct: 477 VEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTLLLT 535

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             FR M  L+ +G +++ +PPLY +   +S       +   D L+   L    ++  D  
Sbjct: 536 LLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGKKINKDDG 595

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
             I +      +D     +  +        +  ++ A  +   
Sbjct: 596 --IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 636



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 5/74 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           L++     G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 579 LMEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 637

Query: 778 SRLMGDEVEPRREF 791
           S LMG++VE RR F
Sbjct: 638 SILMGEDVEARRSF 651


>gi|94988237|ref|YP_596338.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS9429]
 gi|94541745|gb|ABF31794.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS9429]
          Length = 650

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNHGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++     +   D       + E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 60/76 (78%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RR+FI+EN++ S LDI
Sbjct: 635 RRDFIEENAVYSTLDI 650


>gi|251782113|ref|YP_002996415.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390742|dbj|BAH81201.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 650

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/617 (45%), Positives = 397/617 (64%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFATH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV DNGRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IQVFIEADNSITVVDNGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P S+IF+
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDSEIFT 186

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   YHE V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRTALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++        ++  +  +L  E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYIQPGIEQEEQLKTAL--EKYSVGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 58/74 (78%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           GR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEPRR
Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRR 636

Query: 790 EFIQENSLPSALDI 803
           EFI+EN++ S LDI
Sbjct: 637 EFIEENAVYSTLDI 650


>gi|160878454|ref|YP_001557422.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
 gi|160427120|gb|ABX40683.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
          Length = 642

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 238/596 (39%), Positives = 361/596 (60%), Gaps = 20/596 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+   I +L+GL+AV+KRP MYIG T G  GLHH+I+E+LDN IDE L G+ + + +T
Sbjct: 2   EQYNGSQIVVLEGLEAVRKRPGMYIGST-GTRGLHHLIWEILDNGIDEHLAGFCNQLEIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DG  +++D+GRG+P D+H  + I  A V+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 61  LLKDGGISIADHGRGVPVDIHPTKKIPTARVVYTILHAGGKFGGSVYKVSGGLHGVGASV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLV-----VTGSA-GNDTGTEVTFLPSSD 180
           VNALS+ + + I+R+G IY   + + G     L      V G    +DTGT+VTF P   
Sbjct: 121 VNALSTRMIVEIRRDGKIYRDEYEHGGHPCVELENGMLPVVGKCNKSDTGTKVTFYPDPT 180

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +F  +T+  +L+E++FLN ++ I   D+ +    + T   + GI++FVSY++R  
Sbjct: 181 IFETVEFKAETITKKLKEVAFLNKNLSIVFYDQNTG--FKKTYCEEFGIKSFVSYINREA 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + + PI I+G   +I +++A+++ + + E +  + N I   DGGT ++G ++ALTR +
Sbjct: 239 SVIHEEPIYIEGKSGDIEVEVALQYTNSFSEQINAYCNRINVVDGGTLVTGFKTALTRVM 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K+   +  G D R G  +++SIK PDP+F  QTK KL +++ +S VE   
Sbjct: 299 NQYARELGVLKEKDENFDGKDIRNGLVTIISIKHPDPQFEGQTKTKLGNTDAKSAVEDVF 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  ++ + +++    K I++  + +   R A+ +AR    ++  L+      KLA CS +
Sbjct: 359 SGEVTRFFDKNVEILKAILENSMRSYTARKASDKARSAVLKQ--LNDIDTKSKLASCSSK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
            P++ E+++VEGDSAGG+ K  R+R  QA+LPLRGKI+NVE+A  +K+L + EI ++I +
Sbjct: 417 KPEECEVYIVEGDSAGGTVKTARNRRTQAVLPLRGKIINVEKATLEKILVNNEIKSMIAS 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G GIG+D FDI+KLRY KIII+TDADVDGAHI TLLLTFF+R MP LI  G +Y   PP
Sbjct: 477 FGCGIGED-FDISKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPELIMEGKIYRGLPP 535

Query: 541 LYGIT-------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY +        + K  +Y+ ++  L+ +  N              G +    L  
Sbjct: 536 LYRVEYETSEGKKKKKFEYIYNDFELDKFRKNTKHKIIHIQRYKGLGEMDAEQLWE 591



 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPD 758
            Y T         +         LD      + K I +QRYKGLGEM+A QLWETTLNP+
Sbjct: 540 EYETSEGKKKKKFEYIYNDFE--LDKFRKNTKHKIIHIQRYKGLGEMDAEQLWETTLNPE 597

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           TR L +V ITD   AD+  + LM + V PRR FI + +  + LDI
Sbjct: 598 TRVLAQVSITDTVDADETTTLLMSNNVPPRRAFIMDEAKYAKLDI 642


>gi|332366837|gb|EGJ44578.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK1059]
          Length = 649

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 272/658 (41%), Positives = 395/658 (60%), Gaps = 23/658 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GL AV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEININNYNDDAIQVLEGLVAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D+R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G   F + +  Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVG-TDFTLEEANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  L+D          +       G ++ + L  
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  ++   +       +          V   +  +     +   +   L    E
Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEEANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + + R+      +  +     K ++    
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+   
Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|284988639|ref|YP_003407193.1| DNA gyrase subunit B [Geodermatophilus obscurus DSM 43160]
 gi|284061884|gb|ADB72822.1| DNA gyrase, B subunit [Geodermatophilus obscurus DSM 43160]
          Length = 680

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 264/629 (41%), Positives = 364/629 (57%), Gaps = 46/629 (7%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            + Q  +Y   SI +L+GL+AV+KRP MYIG T GE GLHHM++EV+DN++DE+L G+ D
Sbjct: 7   TDAQADAYSGSSITVLEGLEAVRKRPGMYIGST-GERGLHHMVWEVVDNSVDEALAGHCD 65

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + VTL  DG   V DNGRGIP D+H  E     EV+MT LHAGGKF+ KSY VSGGLHG
Sbjct: 66  TVRVTLLPDGGVRVEDNGRGIPVDMHPVEKRPTVEVVMTILHAGGKFDGKSYAVSGGLHG 125

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGV+VVNALS+ L +RI R+G  +   +       PL   G      GT++TF     IF
Sbjct: 126 VGVTVVNALSTELDVRIWRDGTEWHQHYTASEP-GPLEKVGRTT-KRGTQITFWADPGIF 183

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216
               +++DT+  RL+E++FLN  ++I L D+R                            
Sbjct: 184 ETTTYSFDTISRRLQEMAFLNQGLRIVLRDERPGQGKAETGMAEEVSLAEAAPAPTSEEP 243

Query: 217 --EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-----RDNISIDLAMRWNDGY 269
             EP EIT  Y+ G+  FV++++R K  + +S I             +S+D+AM+W++ Y
Sbjct: 244 AFEPTEITYLYEDGLRDFVAHINRTKTAIHRSVIGFSAEGTGKNDMAMSVDIAMQWSEAY 303

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E+V  F N I   +GGTH  G R+ALT  +  Y E     K     + G+D REG  ++
Sbjct: 304 SESVHTFANTINTHEGGTHEEGFRAALTSIVNRYAEDKKLFKSKDEKLTGEDIREGLAAI 363

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+ DP+F  QTK KL ++EV+  V+   N+ +  W E +P EAK I+ K   A    
Sbjct: 364 VSVKLGDPQFEGQTKTKLGNTEVKGFVQRVCNEQIGHWFEANPAEAKQIITKASSA-ARA 422

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
             A +      RK  L+   LPGKLADC   DP+ SE+++VEGDSAGGSAK GR    QA
Sbjct: 423 RRAAQQARQLARKNPLNSTGLPGKLADCRSTDPRNSEVYIVEGDSAGGSAKSGRDSMFQA 482

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD++KLRYHKI++M DADVD
Sbjct: 483 ILPIRGKIINVEKARIDRVLKNTEVQSMITAFGTGI-HDEFDLSKLRYHKIVLMADADVD 541

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G HIRTLLLT  FR M  L+  G +Y+ +PPLY I  G  +         ++Y+      
Sbjct: 542 GQHIRTLLLTLLFRFMRPLVEAGHVYLAQPPLYKIKWGGKV--------GDEYVYTDKEK 593

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKID 598
           E         G   K+D         +++
Sbjct: 594 EGALKLGAEAGRRIKDDAIQRFKGLGEMN 622



 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMNA++LWETT+NP+TR LL+V + DA+ AD+LFS LMG++V+ RR FI  N
Sbjct: 612 IQRFKGLGEMNATELWETTMNPETRVLLQVTLEDAATADELFSVLMGEDVDARRSFITRN 671

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 672 AKDVRFLDV 680


>gi|160901666|ref|YP_001567247.1| DNA topoisomerase (ATP-hydrolyzing) [Petrotoga mobilis SJ95]
 gi|160359310|gb|ABX30924.1| DNA topoisomerase (ATP-hydrolyzing) [Petrotoga mobilis SJ95]
          Length = 641

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 259/638 (40%), Positives = 384/638 (60%), Gaps = 30/638 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y  + I++LKGL+ V+ RP MYIG T G++GL+HM+YE++DNAIDE + G+ D I
Sbjct: 1   MVEKTYSGNDIKVLKGLEPVRLRPGMYIGST-GKTGLNHMVYEIIDNAIDEHVNGFCDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTLN D S  V DNGRGIP D+H  E  +  E++MT LHAGGKF++K+YKVSGGLHGVG
Sbjct: 60  RVTLNEDDSIEVEDNGRGIPVDIHPTENKNTLELVMTSLHAGGKFDKKAYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALS ++++++ R+G IY   +  G+    +++ G   + +GT V FLP  +IF  
Sbjct: 120 ASVVNALSEYMEVKVYRDGKIYYQKYARGVPQTDVIIVGET-DKSGTVVKFLPDKEIFDD 178

Query: 185 QDFNYD--TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            D   +   +++RL+E++FLN ++++    +      +    + GG+  F++Y+ + +K 
Sbjct: 179 GDITVESRLIENRLKEIAFLNPNLKVIF--EDRKRDYKQEFHFLGGLNEFINYILKRRKM 236

Query: 243 L-MQSPIRIQGSRDNISIDLAMR------WNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             +  P+ + GS     ++  ++      + D     V+ F NNI   DGG H SG + A
Sbjct: 237 NSISEPVYMYGSYQYSKVESEIQVEAAFVYTDSEESEVISFVNNIRTIDGGEHESGFKQA 296

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR    Y  K    K+   +  G+D REG  +++ IKMP+P F  QTK +L S   R  
Sbjct: 297 LTRLSNEYARKYNVLKEKDENFSGEDVREGLLAIIHIKMPNPVFEGQTKGRLGSKVAREA 356

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V     + LS + + +  EAK I +++  A   R AA+RARD  +RK + +  +LPGKLA
Sbjct: 357 VNQITTEKLSLYFDANIKEAKNIFERMFLAYKKRLAAKRARDSIKRKTIFENTTLPGKLA 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+ RD  +SELF+VEGDSAGG+AKQ R R  QAILPLRGKILN E+  F K+L ++++ 
Sbjct: 417 DCTSRDLNESELFIVEGDSAGGNAKQARDRMYQAILPLRGKILNAEKTDFLKLLKNEQVS 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            +I ALGTGIG++ F+++KLRY KIIIMTDADVDGAHIRTL+LT F + M SLI  G++Y
Sbjct: 477 NIIIALGTGIGEE-FNLSKLRYGKIIIMTDADVDGAHIRTLVLTLFHKYMRSLIEEGYVY 535

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL-------- 587
           I +PPLY    GK   Y+  +E LE+        +         G ++ + L        
Sbjct: 536 IAQPPLYRFEIGKQHFYLYSDEELEELKKKYGDKKWRIQRYKGLGEMNPDQLRETTMDRD 595

Query: 588 --------RNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
                      ++ A ++ +++  + P+  + FIE   
Sbjct: 596 TRKLVKIKMEDLEMAEEMIEILMGYDPSIRREFIESNA 633



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 99/294 (33%), Gaps = 11/294 (3%)

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
             I T  L+ +F             I +       +  + +  +D    +    N +L  
Sbjct: 358 NQITTEKLSLYF----DANIKEAKNIFERMFLAYKKRLAAKRARDSIKRKTIFENTTLPG 413

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
           ++          S+  +           +     Y           +   + N E    +
Sbjct: 414 KLADCTSRDLNESELFIVEGDSAGGNAKQARDRMYQAILP------LRGKILNAEKTDFL 467

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690
            +    +++N +  +     + ++ S      ++      V    +              
Sbjct: 468 KLLKNEQVSNIIIALGTGIGEEFNLSKLRYGKIIIMTDADVDGAHIRTLVLTLFHKYMRS 527

Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
            I    +      +           +     L +     G K   +QRYKGLGEMN  QL
Sbjct: 528 LIEEGYVYIAQPPLYRFEIGKQHFYLYSDEELEELKKKYGDKKWRIQRYKGLGEMNPDQL 587

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            ETT++ DTR L+++K+ D   A+++   LMG +   RREFI+ N+     LDI
Sbjct: 588 RETTMDRDTRKLVKIKMEDLEMAEEMIEILMGYDPSIRREFIESNANKVKELDI 641


>gi|300857422|ref|YP_003782405.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis FRC41]
 gi|300684876|gb|ADK27798.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis FRC41]
 gi|302205162|gb|ADL09504.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis C231]
 gi|302329720|gb|ADL19914.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis 1002]
 gi|308275403|gb|ADO25302.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis I19]
          Length = 681

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 271/625 (43%), Positives = 378/625 (60%), Gaps = 48/625 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y A SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ G+
Sbjct: 1   MA--TAEHEYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + VTL  DG   V DNGRGIP D+H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 58  ATHVDVTLLEDGGVEVVDNGRGIPVDMHAS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IK  G  +  +F N + D   +V G     TGT + F P ++
Sbjct: 117 HGVGISVVNALSTRVEADIKLHGKHWYQNFSNAVPDE--LVQGGNARGTGTTIRFWPDAE 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221
           IF    F +D +  RL+E++FLN  + +SL DKR  +                       
Sbjct: 175 IFETTTFKFDIIARRLQEMAFLNKGLTLSLTDKRVSDEELELEAIADEGDTAENVSLEKI 234

Query: 222 ---------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                                  +Y  G++ +V++L++ K+ +  + +  +   D+  ++
Sbjct: 235 DSDADGNIEAPAAPKKREKKKVFYYPEGLKDYVAHLNKSKQVIHPTIVAFEAKGDDHEVE 294

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN+GY ++V  F N I   +GGTH  G R+ALT  +  Y  +    K+ + ++ GD
Sbjct: 295 VAMQWNNGYAQSVHTFANTINTIEGGTHEEGFRAALTTLMNRYAREHRLLKEKESNLTGD 354

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           DCREG ++V+S+++ DP+F  QTK KL ++EV+  V+  VN+ ++ WL+ +P EAK I+ 
Sbjct: 355 DCREGLSAVISVRVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHVADWLDANPAEAKTIIN 414

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP KSEL++VEGDSAGGSAK
Sbjct: 415 KAVSSAHARMAARKARDLVRRKSATDLGGLPGKLADCRSKDPVKSELYVVEGDSAGGSAK 474

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D FDINKLRYHKI
Sbjct: 475 AGRDSLYQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDINKLRYHKI 533

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESL 559
           ++M DADVDG+HI TLLLT  FR MP LI  G +Y+ +PPLY +  GK    +   +   
Sbjct: 534 VLMADADVDGSHIATLLLTLLFRFMPQLIEEGHVYLAQPPLYKLKWGKGDPGFAYSDAER 593

Query: 560 EDYLINQSLSEEIELFCDSKGVISK 584
           +  L             D       
Sbjct: 594 DSLLEEGLAQGRKINKDDGIQRYKG 618



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/88 (55%), Positives = 61/88 (69%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           SLL+   + GRK I+    +QRYKGLGEMNAS+LWETTL+P+ R L RV I DA +AD++
Sbjct: 595 SLLEEGLAQGRK-INKDDGIQRYKGLGEMNASELWETTLDPEFRVLRRVDINDAQRADEI 653

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI   +     LDI
Sbjct: 654 FSILMGDDVAARRSFITRRAKDVRFLDI 681


>gi|326383914|ref|ZP_08205598.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395]
 gi|326197373|gb|EGD54563.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395]
          Length = 684

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 272/615 (44%), Positives = 373/615 (60%), Gaps = 37/615 (6%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S   + S Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA
Sbjct: 12  SGKSKPSEYGADSISILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYA 70

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + VTL  DG   V D+GRG+P  +H   G+ A EVIMT+LHAGGKF+  SY VSGGLH
Sbjct: 71  TRVDVTLLADGGIRVVDDGRGMPVGMHA-TGVPAVEVIMTQLHAGGKFDSDSYAVSGGLH 129

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS+ + L IKR G+++  ++ N     PL+  G A + TGT V+F     I
Sbjct: 130 GVGISVVNALSTKVDLEIKRNGSVWRQTYNNAEP-TPLLE-GEAASGTGTSVSFWADPKI 187

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------------------- 216
           F   ++N +T+  RL+E++FLN  + I+L D+R                           
Sbjct: 188 FETTEYNIETIARRLQEMAFLNKGLTITLTDERVHEAVLEAEVEESEDGDASIKTEEQKA 247

Query: 217 ----EPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
               + +  T  Y  G+  ++ +   R K P+ ++ +      +   +++AM+WN+GY E
Sbjct: 248 TAIAKVKTRTYHYPDGLIDYIKHLNSRSKAPIHKTVVGFTAKGEGHEVEIAMQWNEGYAE 307

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S
Sbjct: 308 SVHTFANTINTAEGGTHEEGFRAALTSTVNRYAVDKKLIKEKDGKLSGDDIREGLAAVIS 367

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ DP+F  QTK KL ++EV+S V+   N+ L+ W + +P EAK I+KK  D+   R A
Sbjct: 368 VKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLAMWFDANPAEAKTIIKKAADSQQARLA 427

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           ARRAR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAIL
Sbjct: 428 ARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAIL 487

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++M DADVDG 
Sbjct: 488 PLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDGQ 546

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQSLS 569
           HI TLLLT  FR M  LI  G +Y+  PPLY     +G+  ++  ++   +  L     +
Sbjct: 547 HIATLLLTLLFRFMRPLIEQGHVYLAMPPLYKLKWQKGQEPEFAYNDRERDALLEAGKAA 606

Query: 570 EEIELFCDSKGVISK 584
            +     D       
Sbjct: 607 GKKINTDDGIQRYKG 621



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 8/88 (9%)

Query: 724 DTIFSIGR---KGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D +   G+   K I+    +QRYKGLGEMNAS+LWETT++PD R L +V + DA+ AD+L
Sbjct: 597 DALLEAGKAAGKKINTDDGIQRYKGLGEMNASELWETTMDPDVRVLKQVTLDDAAAADEL 656

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMG++V  RR FI  N+     LD+
Sbjct: 657 FSILMGEDVVARRTFIARNAKDVRFLDV 684


>gi|168485800|ref|ZP_02710308.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|169834087|ref|YP_001694306.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae
           Hungary19A-6]
 gi|73916366|gb|AAZ93051.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916388|gb|AAZ93062.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916404|gb|AAZ93070.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|168996589|gb|ACA37201.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183570930|gb|EDT91458.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC1087-00]
          Length = 647

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|209559109|ref|YP_002285581.1| DNA gyrase subunit B [Streptococcus pyogenes NZ131]
 gi|209540310|gb|ACI60886.1| DNA gyrase subunit B [Streptococcus pyogenes NZ131]
          Length = 650

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++     +   D       + E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 60/76 (78%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RR+FI+EN++ S LDI
Sbjct: 635 RRDFIEENAVYSTLDI 650


>gi|73916426|gb|AAZ93081.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  YV K+   K+  +++ G D REG   VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYVRKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|256847177|ref|ZP_05552623.1| DNA topoisomerase IV, B subunit [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715841|gb|EEU30816.1| DNA topoisomerase IV, B subunit [Lactobacillus coleohominis
           101-4-CHN]
          Length = 670

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 260/599 (43%), Positives = 366/599 (61%), Gaps = 17/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       YD+ SI+ILKGL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L GY
Sbjct: 1   MAKK--EYQYDSSSIKILKGLEAVRKRPGMYIGSTD-TYGLHHLVYEIVDNSVDEALSGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119
            D I VT+  D S TV D+GRG+P  +H   G    EVIMT LHAGGKF Q   YK SGG
Sbjct: 58  GDEINVTIGADNSITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQADGYKTSGG 116

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALS+ L L I R+   Y+  F + G     L   G   + +GT V+F P 
Sbjct: 117 LHGVGASVVNALSTNLTLTIVRDHVRYQEKFKDGGQPVGTLKKLGKTKDSSGTTVSFKPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS   ++Y+TL  RLRE +FL   ++I+L D+R  + +  T  Y+ GI+ FV YL+ 
Sbjct: 177 PAIFSTTVYDYNTLARRLRESAFLLKGLRITLTDQRPGQEQSQTFQYENGIKDFVEYLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             K  +   +   G +D + +D+A ++NDGY ENVL F NN+   DGGTH +G RSA T+
Sbjct: 237 D-KDTLGKILTFTGKQDGVEVDVAAQYNDGYSENVLSFVNNVRTPDGGTHEAGFRSAWTK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  K+   K   +++ G D REG T+V+S+++P+   +F  QTK+KL + E R +V
Sbjct: 296 SFNDYARKTNLLKDRDKNLEGSDVREGLTAVVSVRIPERILQFEGQTKDKLGTPEARKIV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           ++ V++ L+  L E+   A+++++K + A   R+AAR+ARD     +K      +L GKL
Sbjct: 356 DNIVSEQLNYALLENGDFAQMLIRKAVKARQAREAARKARDLSRNGKKRSRKERNLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++ +K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+
Sbjct: 416 TPAQSKNAQKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G + F++    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +
Sbjct: 476 NTIIYTVGAGVGSE-FNVADSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKV 534

Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           YI  PPLY + +       + Y    E L                    G ++ + L  
Sbjct: 535 YIALPPLYRLQQGRGAKNKITYAWTNEELTKLTKKMG-KTASLQRFKGLGEMNADQLWE 592



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 106/258 (41%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++       L         +    S  +          ++   ++     
Sbjct: 378 IRKAVKARQAREAARKARDLSRNGKKRSRKERNLSGKLTPAQSKNAQKNELFLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  +V    +L   +  +       ++ + +N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGVGSEFNVADSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      I + ++      +  L    G K KIT  
Sbjct: 498 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVYIALPPLYRLQQGRGAKNKITYA 557

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     K  S+QR+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   
Sbjct: 558 WTNEELTKLTKKMGKTASLQRFKGLGEMNADQLWETTMNPETRTLIRVQINDAQLAEKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMG++VEPRRE+I++N
Sbjct: 618 TTLMGNKVEPRREWIEKN 635


>gi|163790923|ref|ZP_02185346.1| DNA gyrase, B subunit [Carnobacterium sp. AT7]
 gi|159873765|gb|EDP67846.1| DNA gyrase, B subunit [Carnobacterium sp. AT7]
          Length = 645

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 289/596 (48%), Positives = 406/596 (68%), Gaps = 10/596 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS+ I++     + YDA  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MSEEIKSKQDLANEYDASQIQVLEGLEAVRKRPGMYIGATSSE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I +++  DGS  V DNGRGIP D+  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFADEINLSIEKDGSIIVMDNGRGIPVDIQAKTGRPALETVFTILHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + +   IY   +  G + + + V G   +  GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVYVYKNSKIYHQQYAQGKVVHDVEVIGET-DKHGTTVHF 178

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF    +FN+D L  R+REL+FLN  ++I++ DKR  +   +   Y+GGI+++V 
Sbjct: 179 VPDPEIFKETVEFNFDKLATRVRELAFLNKGLKITVEDKREDKQAFLEYHYEGGIKSYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+ +K  L   PI ++G +  I+I++AM+  DGYH N++ F NNI   +GGTH  G ++
Sbjct: 239 FLNENKVVLYDEPIFLEGEQQGITIEVAMQHTDGYHNNLMSFANNIHTYEGGTHEFGFKT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y +K+   K+++ ++ G+D REG T VLSIK PDP+F  QTK KL +SE R+
Sbjct: 299 ALTRVINDYAKKNKIIKENEENLTGEDVREGLTIVLSIKHPDPQFEGQTKTKLGNSEART 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           + +   +     +L E+P  A+ IV+K L A+  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITDRLFSAHFEKFLMENPPVARQIVEKGLLAARARLAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +DP  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+++EI
Sbjct: 419 ADCSSKDPSISELFIVEGDSAGGSAKQGRSRLFQAILPIRGKILNVEKATLDRILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGGD-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           YI +PPLY + +GK + Y+  E+ L +YL    LS +         G +    L  
Sbjct: 538 YIAQPPLYQVRQGKKMVYLDSEDELNEYLKEIPLSPKPAIQRYKGLGEMDAEQLWE 593



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT+NP+ R +L+V + DA +AD     LMGD VEPRR FI+EN
Sbjct: 577 IQRYKGLGEMDAEQLWETTMNPENRRMLQVTVDDAIEADKSCDMLMGDRVEPRRIFIEEN 636

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 637 ARYVQNLDI 645


>gi|15674782|ref|NP_268956.1| DNA gyrase subunit B [Streptococcus pyogenes M1 GAS]
 gi|71910366|ref|YP_281916.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS5005]
 gi|73919732|sp|Q9A0L0|GYRB_STRP1 RecName: Full=DNA gyrase subunit B
 gi|13621909|gb|AAK33677.1| putative DNA gyrase, subunit B [Streptococcus pyogenes M1 GAS]
 gi|71853148|gb|AAZ51171.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS5005]
          Length = 650

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFLYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++     +   D       + E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 60/76 (78%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RR+FI+EN++ S LDI
Sbjct: 635 RRDFIEENAVYSTLDI 650


>gi|116511808|ref|YP_809024.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107462|gb|ABJ72602.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 644

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 266/595 (44%), Positives = 377/595 (63%), Gaps = 16/595 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YD  +IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ + ITVT
Sbjct: 6   NNYDDSAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNKITVT 64

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS +V D GRG+P   H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 65  INADGSLSVEDEGRGMPVGKHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VNALS+WL++ I R+G +Y   F N G     L   G A    TGT+VTF+P S IFS  
Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSTIFSTT 183

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ +  RL E +FL   V ISL DKR+ E       Y+ G++ FV+YL+  K  L  
Sbjct: 184 EFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVAYLNEDKDSLTP 241

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +G +D   +++A+++NDGY EN+L F NN+  KDGGTH +GL++A+T+ +  Y  
Sbjct: 242 VL-YFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K    K   +++ G D REG T+VLS+ +P+   +F  QTK+KL S   R VV+S V++ 
Sbjct: 301 KVNLLKDKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           LS +L E+   A+ +++K + A   R+AAR+AR+     +K   D   L GKL     ++
Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +
Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G D F +    Y K+IIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPL
Sbjct: 481 GAGVGAD-FTLADRNYDKVIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPL 539

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           Y ++    + + ++Y   +  L +       +  ++ +     + +       +D
Sbjct: 540 YKMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMD 594



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             +KI+       L  +     K  ++QRYKGLGEMNA QLWETT++P+TR+L++V I D
Sbjct: 548 KKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTLIQVTIDD 607

Query: 770 ASQADDLFSRLMGDEVEPRREFIQEN 795
           A+QA+   S LMGD+VEPRR++I+ N
Sbjct: 608 AAQAEKRVSVLMGDKVEPRRKWIENN 633


>gi|259503381|ref|ZP_05746283.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus antri DSM
           16041]
 gi|259168677|gb|EEW53172.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus antri DSM
           16041]
          Length = 663

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/657 (41%), Positives = 386/657 (58%), Gaps = 28/657 (4%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YD  SIQ+LKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY D 
Sbjct: 7   TTKKVKYDESSIQVLKGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALSGYGDE 65

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGGLHG 122
           I VT+  D S TV D+GRG+P  +H   G    EVIMT LHAGGKF Q   YK SGGLHG
Sbjct: 66  INVTIEADNSITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQADGYKTSGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALS+ L L I R+   Y+  F N G     L   G    D+GT VTF P   I
Sbjct: 125 VGASVVNALSTNLTLTIVRDHVRYQEKFKNGGQPVGTLKKLGKTRVDSGTTVTFKPDPAI 184

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+   ++Y+TL +RLRE +FL   ++I L DKR  + +E    +  GI+ FVSYL+  K 
Sbjct: 185 FTTTTYDYNTLANRLRESAFLLKGIKIVLADKRPGQEQENVFQFDDGIQEFVSYLNEGKD 244

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L ++     G    + +++A ++NDGY E +L F NN+   DGGTH +G RSA T+   
Sbjct: 245 TLGKTL-YFDGKDQGVEVEVAAQYNDGYSETLLSFVNNVRTPDGGTHEAGFRSAWTKTFN 303

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359
            Y ++    K + +++ G D REG T+V+S+++P+   +F  QTK+KL + E R +V++ 
Sbjct: 304 EYAKRVGLLKANDKNLEGSDVREGLTAVVSVRIPERLLQFEGQTKDKLGTPEARKIVDTV 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADC 417
           V++ L+  L E+   A+++++K L A   R+AAR+AR+  R  ++      +L GKL   
Sbjct: 364 VSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKSRKERNLSGKLTPA 423

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
             ++ +K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ T+
Sbjct: 424 QSKNAQKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEELNTI 483

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I  +G G G + FD++   Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +YI 
Sbjct: 484 IYTVGAGAGSE-FDVDDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVYIA 542

Query: 538 KPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN---- 589
            PPLY + +       + Y    E L   L  +             G ++ + L      
Sbjct: 543 LPPLYRLQQGKGAKTKITYAWTNEELTK-LTKRMGKTAQLQRFKGLGEMNADQLWETTMN 601

Query: 590 ---------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                     I+DA   ++ +     N  +   E    +  F    DQE +  +ASK
Sbjct: 602 PETRTLIRVRIEDAELAERRVTTLMGNKVEPRREWIEENVQFTLSDDQESDELVASK 658



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++              +  +    S  +          ++   ++     
Sbjct: 383 IRKALKAREAREAARKARNQARGGKRKSRKERNLSGKLTPAQSKNAQKNELFLVEGDSAG 442

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  +V    +L   +  +   +   +    +N 
Sbjct: 443 GSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFDVDDSNY 502

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      I + ++      +  L    G K KIT  
Sbjct: 503 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVYIALPPLYRLQQGKGAKTKITYA 562

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     K   +QR+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   
Sbjct: 563 WTNEELTKLTKRMGKTAQLQRFKGLGEMNADQLWETTMNPETRTLIRVRIEDAELAERRV 622

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMG++VEPRRE+I+EN
Sbjct: 623 TTLMGNKVEPRREWIEEN 640


>gi|73916468|gb|AAZ93102.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E  E+    + G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIELHY--ENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 619 NVLMGDKVEPRRKWIEDN 636


>gi|75288399|sp|Q5YLB4|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|38017095|gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana]
          Length = 731

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 268/597 (44%), Positives = 374/597 (62%), Gaps = 12/597 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +N ++  Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNA+DE+  G+A 
Sbjct: 83  ENTKSKGYGSEQIQVLEGLDPVRKRPGMYIGST-GPRGLHHLVYEILDNAVDEAQAGFAT 141

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120
            I V L+ D S +++DNGRGIPT+LH     S+ E ++T LHAGGKF   S  Y VSGGL
Sbjct: 142 KIDVVLHADNSVSIADNGRGIPTELHPVTKKSSLETVLTVLHAGGKFGGSSSGYNVSGGL 201

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ I R+G  Y+  +  G     L+         +  GT + F P
Sbjct: 202 HGVGLSVVNALSQALEVTIWRDGKEYQQKYSRGKPITTLICHDLPVEMRDRQGTAIRFWP 261

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGIEAFVS 234
             ++F+ +  F+Y+T+  R+REL+FLN  + I+L  +     + +    FY GG+  +V 
Sbjct: 262 DKEVFTTEMQFDYNTIAGRIRELAFLNPELTIALKKEDIDPEKIQCNEYFYAGGLVEYVK 321

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+  KKPL       +   D I+ID+A++W  D Y + +L + N+I   DGGTH+ G++
Sbjct: 322 WLNADKKPLHDVLG-FRKEADGITIDMALQWCSDAYSDTMLGYANSIRTIDGGTHIDGVK 380

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + +  +KS   K+   S+ G+  REG T V+S+K+P+P F  QTK +L + EVR
Sbjct: 381 AALTRILNNLGKKSKTIKEKDISLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVR 440

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            VV+  V + L+ +LE HP     I+ K L+A     AA+RAR+L R+K VL  +SLPGK
Sbjct: 441 KVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGK 500

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  +P+++E+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  ++E
Sbjct: 501 LADCSATNPEEAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEE 560

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  LI  LG G+  + F    LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L   G 
Sbjct: 561 IQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEEGC 620

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +Y+  PPLY + RGK + Y  D+  L+    +   +           G +    L  
Sbjct: 621 IYVGVPPLYKVERGKQVYYCYDDAELKKVQRSFPSNASYNIQRFKGLGEMMPAQLWE 677



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 124/331 (37%), Gaps = 32/331 (9%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLEDY 562
           D  + G H+R  L      ++P+    G        P +  +      +Y+ +   L   
Sbjct: 401 DISLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 460

Query: 563 LINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKTFIEQAV 617
           +++  LS+ +     +       +L  +  +  +  +   + D     P   + FI +  
Sbjct: 461 VLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGD 520

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL----------VKRI 667
            +G    +       ++       LN   +     +      + IL           K+ 
Sbjct: 521 SAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKE 580

Query: 668 ARGVQEQFVLEGS---------SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKI 716
           A    +  +L  +          + +F  +Y+R       I      +  +         
Sbjct: 581 ALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYC 640

Query: 717 TGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                L     S       ++QR+KGLGEM  +QLWETT+NP+TR L ++ + DA++A+ 
Sbjct: 641 YDDAELKKVQRSFPSNASYNIQRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANV 700

Query: 776 LFSRLMGDEVEPRREFIQENSLPSA---LDI 803
           +FS LMG  V+ R++ IQ ++       LDI
Sbjct: 701 VFSSLMGSRVDIRKQLIQNSASMMNLEQLDI 731


>gi|94994032|ref|YP_602130.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10750]
 gi|94547540|gb|ABF37586.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10750]
          Length = 650

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/617 (44%), Positives = 394/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y+ L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTQFDYNVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++     +   D       + E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 60/76 (78%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RR+FI+EN++ S LDI
Sbjct: 635 RRDFIEENAVYSTLDI 650


>gi|281491482|ref|YP_003353462.1| topoisomerase IV subunit B [Lactococcus lactis subsp. lactis KF147]
 gi|281375200|gb|ADA64713.1| Topoisomerase IV, subunit B [Lactococcus lactis subsp. lactis
           KF147]
          Length = 644

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 267/595 (44%), Positives = 378/595 (63%), Gaps = 16/595 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YD  +IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ + I+VT
Sbjct: 6   NNYDDSAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRISVT 64

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS +V D GRG+P   H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 65  INADGSLSVEDEGRGMPVGKHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VNALS+WL++ I R+G +Y   F N G     L   G A    TGT+VTF+P S IFS  
Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSSIFSTT 183

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ +  RL E +FL   V ISL DKR+ E       Y+ G++ FVSYL+  K  L  
Sbjct: 184 EFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVSYLNEDKDSLTP 241

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +G +D   +++A+++NDGY EN+L F NN+  KDGGTH +GL++A+T+ +  Y  
Sbjct: 242 VL-YFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K    K+  +++ G D REG T+VLS+ +P+   +F  QTK+KL S   R VV+S V++ 
Sbjct: 301 KVNLLKEKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           LS +L E+   A+ +++K + A   R+AAR+AR+     +K   D   L GKL     ++
Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +
Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPL
Sbjct: 481 GAGVGAD-FTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPL 539

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           Y ++    + + ++Y   +  L +       +  ++ +     + +       +D
Sbjct: 540 YKMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMD 594



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             +KI+       L  +     K  ++QRYKGLGEMNA QLWETT++P+TR+L++V I D
Sbjct: 548 KKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTLIQVTIDD 607

Query: 770 ASQADDLFSRLMGDEVEPRREFIQEN 795
           A+QA+   S LMGD+VEPRR++I+ N
Sbjct: 608 AAQAEKRVSVLMGDKVEPRRKWIENN 633


>gi|70704907|gb|AAZ06865.1| DNA gyrase subunit B [Acholeplasma vituli]
          Length = 538

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 267/537 (49%), Positives = 365/537 (67%), Gaps = 4/537 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           GE GLHH+++E++DN+IDES+ GYA  I++ +       V+D+GRGIP D+H +   SA 
Sbjct: 3   GERGLHHLVWEIVDNSIDESMVGYASEISLEIQKGNIIRVTDDGRGIPVDIHAKTKKSAV 62

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E I+T LHAGGKF+ KSYKVSGGLHGVG SVVNALSSW ++ I+R G +Y+  +  GI  
Sbjct: 63  ETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTIRRNGLLYQQEYKKGIPQ 122

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L V G + + TGTE+ F    ++F     ++++TL++R++EL+FLN  ++IS+ D+R 
Sbjct: 123 YDLKVIGESTH-TGTEIEFQADPEVFTETTTYDFETLRNRIQELAFLNRHIKISIEDQRG 181

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
             P      Y+GGI+ +V++L+ +K  +    +  Q   DNI+++LA+++ND Y  NV  
Sbjct: 182 ETPVRFEYQYEGGIQEYVTFLNGNKGIVHPEIVYAQKEVDNITVELALQYNDSYATNVFS 241

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNI   +GG H  G + ALTR I +Y + +   K    S IG+D REG T+++S+K P
Sbjct: 242 FTNNIHTHEGGMHEDGFKLALTRVIGNYAKDNNILK-KDESFIGEDTREGLTAIISVKHP 300

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL + EVR +V     + L  +L E+P  AK I+ KVL AS  R AAR+A
Sbjct: 301 NPQFEGQTKTKLGNPEVRQIVSQITGEALERFLLENPTAAKSIMDKVLMASRARIAARKA 360

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++ TRRK  LD+     KLADC  R P++SE+++VEGDSAGGSAKQGR    QAILPLRG
Sbjct: 361 KEATRRKSPLDMLGFASKLADCRNRKPEESEIYIVEGDSAGGSAKQGRDSAFQAILPLRG 420

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNVE+AR DK LS++EI ++I A GTGIG+D FDI K RYHKI+IMTDADVDGAHIRT
Sbjct: 421 KVLNVEKARLDKALSNKEILSMIQAFGTGIGED-FDITKARYHKIVIMTDADVDGAHIRT 479

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           L+LTF FR M  LI  G++Y+ +PPLY +  GK ++YV DEE L   L        I
Sbjct: 480 LMLTFLFRYMKPLIDFGYVYVAQPPLYKVQSGKRIEYVYDEERLRVVLEQMGGRPAI 536


>gi|125624342|ref|YP_001032825.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493150|emb|CAL98114.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071126|gb|ADJ60526.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 644

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 266/595 (44%), Positives = 377/595 (63%), Gaps = 16/595 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YD  +IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ + ITVT
Sbjct: 6   NNYDDSAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNKITVT 64

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS +V D GRG+P   H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 65  INADGSLSVEDEGRGMPVGKHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VNALS+WL++ I R+G +Y   F N G     L   G A    TGT+VTF+P S IFS  
Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSTIFSTT 183

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ +  RL E +FL   V ISL DKR+ E       Y+ G++ FV+YL+  K  L  
Sbjct: 184 EFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVAYLNEDKDSLTP 241

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +G +D   +++A+++NDGY EN+L F NN+  KDGGTH +GL++A+T+ +  Y  
Sbjct: 242 VL-YFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K    K   +++ G D REG T+VLS+ +P+   +F  QTK+KL S   R VV+S V++ 
Sbjct: 301 KVNLLKDKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           LS +L E+   A+ +++K + A   R+AAR+AR+     +K   D   L GKL     ++
Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +
Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G D F +    Y K+IIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPL
Sbjct: 481 GAGVGAD-FTLADRNYDKVIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPL 539

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           Y ++    + + ++Y   +  L +       +  ++ +     + +       +D
Sbjct: 540 YKMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMD 594



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 59/86 (68%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             +KI+       L  +     K  ++QRYKGLGEMNA QLWETT++P+TR+L++V I D
Sbjct: 548 KKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTLIQVTIDD 607

Query: 770 ASQADDLFSRLMGDEVEPRREFIQEN 795
            +QA+   S LMGD+VEPRR++I+ N
Sbjct: 608 VAQAEKRVSVLMGDKVEPRRKWIENN 633


>gi|325978151|ref|YP_004287867.1| topoisomerase IV subunit B [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178079|emb|CBZ48123.1| topoisomerase IV subunit B [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 649

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 269/623 (43%), Positives = 392/623 (62%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I V +N D S TVSD GRG+PT  H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNQIDVIINSDDSVTVSDQGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V ++L D R  E   +   Y+ G++ FV YL+
Sbjct: 179 DDTIFSTIDFKFNTIAERLKESAFLLKDVTLTLTDNRPEEAEHLEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I + G   N  +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 239 EDKETLTP-VISVTGEDQNFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  KS   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN  +A+   ++ ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G + F++    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIYTIGAGVGAE-FNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + ++Y   +  LE+         +++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 597 TMNPETRTLIRVTIEDLARAERR 619



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       ++   +N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEEINTMIYTIGAGVGAEFNVENSNY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEQVEYA 560

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 621 NVLMGDKVEPRRKWIEDN 638


>gi|19745824|ref|NP_606960.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS8232]
 gi|50913919|ref|YP_059891.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10394]
 gi|73919730|sp|Q5XD05|GYRB_STRP6 RecName: Full=DNA gyrase subunit B
 gi|73919731|sp|Q8P1M4|GYRB_STRP8 RecName: Full=DNA gyrase subunit B
 gi|19747970|gb|AAL97459.1| putative DNA gyrase, subunit B [Streptococcus pyogenes MGAS8232]
 gi|50902993|gb|AAT86708.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10394]
          Length = 650

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 274/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L +     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEII-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++     +   D       + E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 60/76 (78%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RR+FI+EN++ S LDI
Sbjct: 635 RRDFIEENAVYSTLDI 650


>gi|139474074|ref|YP_001128790.1| DNA gyrase subunit B [Streptococcus pyogenes str. Manfredo]
 gi|134272321|emb|CAM30575.1| DNA gyrase subunit B [Streptococcus pyogenes str. Manfredo]
          Length = 650

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 274/617 (44%), Positives = 394/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L +     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEII-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++     +   D       + E      SK ++ +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPIVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR    +QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 575 SIGRSKPIVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RR+FI+EN++ S LDI
Sbjct: 635 RRDFIEENAVYSTLDI 650


>gi|328949784|ref|YP_004367119.1| DNA gyrase, B subunit [Marinithermus hydrothermalis DSM 14884]
 gi|328450108|gb|AEB11009.1| DNA gyrase, B subunit [Marinithermus hydrothermalis DSM 14884]
          Length = 637

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 281/639 (43%), Positives = 392/639 (61%), Gaps = 25/639 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+YDA SI++LKGL+ V+KRP+MYI  T G  G H ++ E+LDNA+DE+L GYA+ I VT
Sbjct: 2   STYDASSIKVLKGLEGVRKRPAMYIAGT-GTDGYHQLLSEILDNAVDEALAGYANEIKVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V DNGRGIP  +   EG  A EVI T LHAGGKF + +YKVSGGLHGVG SV
Sbjct: 61  LHADGSASVEDNGRGIPVGIMPGEGRPAVEVIYTELHAGGKFEEGAYKVSGGLHGVGASV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSV-Q 185
           VNALS+W  + + R+G  Y + F  G +  PL   G A  + TGT V FLP + IF    
Sbjct: 121 VNALSAWTVVEVFRDGKHYRIQFSRGRVVEPLTELGPAPKHKTGTRVHFLPDATIFEPGL 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F++  ++ R+RE+SFL   ++I L D+R  +        KGG+ +F   L   ++ L  
Sbjct: 181 EFDFRRVRRRVREVSFLAGGLKIILKDERKGKE--EVFHDKGGVASFAKALAEGEELLYD 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+R+ G  +++ +D+ +    GY   +L + N IP +DGG HLSG R+A TR +  Y +
Sbjct: 239 KPVRLHGQVEDVEVDVGLIHTKGYTTELLTYANMIPTRDGGVHLSGFRTAYTRALNKYAQ 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K  + +  G+D  EG  +V+S+K+P P+F  QTK KL++ E +S V   V D L 
Sbjct: 299 RAGLVKNGQPTPSGEDLLEGLFAVISVKIPQPQFEGQTKGKLLNPEAQSAVTKVVYDQLM 358

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
             LE +P  AK+I +K L A+  R+AAR+AR+L RR+  L+   LPGKLADC   +P ++
Sbjct: 359 EHLERNPRVAKLIYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADCQTENPDEA 418

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K L + EI  ++ A+G GI
Sbjct: 419 ELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANLQKALKNNEIRAMVAAIGAGI 478

Query: 486 GQD----SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
                   FD+  +RYHKII+MTDADVDG+HIRTLLLTFF+R M  +I  G+LYI +PPL
Sbjct: 479 DGTGQDGHFDLESVRYHKIILMTDADVDGSHIRTLLLTFFYRYMRPVIEAGYLYIAQPPL 538

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN------------ 589
           Y +  G+ ++YV D+E+L   L                G ++   L              
Sbjct: 539 YRLKVGRKIEYVYDDETLRKKLAALEGKPYEIQRFKGLGEMNPEQLWETTMNPETRVLRQ 598

Query: 590 -FIDDALKIDKLIKDFYPNH---DKTFIEQAVISGVFNC 624
             I+DAL+ +++ +    +     + FIE+       + 
Sbjct: 599 VTIEDALEANEIFERLMGSEVAPRREFIEENARFAELDV 637



 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 71/133 (53%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L        +    +L   + ++ 
Sbjct: 505 VDGSHIRTLLLTFFYRYMRPVIEAGYLYIAQPPLYRLKVGRKIEYVYDDETLRKKLAALE 564

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            K   +QR+KGLGEMN  QLWETT+NP+TR L +V I DA +A+++F RLMG EV PRRE
Sbjct: 565 GKPYEIQRFKGLGEMNPEQLWETTMNPETRVLRQVTIEDALEANEIFERLMGSEVAPRRE 624

Query: 791 FIQENSLPSALDI 803
           FI+EN+  + LD+
Sbjct: 625 FIEENARFAELDV 637


>gi|311741695|ref|ZP_07715517.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303216|gb|EFQ79297.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 689

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/695 (39%), Positives = 389/695 (55%), Gaps = 58/695 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +YDA SI IL+GL+AV+KRP MYIG T G  GLHH+I+E++DN++DE++ GY
Sbjct: 1   MAE---EHAYDAGSITILEGLEAVRKRPGMYIGST-GSRGLHHLIWEIVDNSVDEAMAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD +TV L  DG   V DNGRGIP ++H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 57  ADKVTVKLLEDGGVEVIDNGRGIPVEMHAS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IKR+G  +  +F N I D  +   G     TGT++ F    +
Sbjct: 116 HGVGISVVNALSTRVEAEIKRDGKHWYQNFQNAIPDELVE--GGNARGTGTKIRFWADPE 173

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221
           +F   +++YDT+  RL+E++FLN  + I LID+R  E +                     
Sbjct: 174 VFETTEYDYDTIARRLQEMAFLNKGLSIELIDERVTEEQIELEEIADAESGETSADETSF 233

Query: 222 ------------------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
                                         T  Y  G+  +V YL++ K  +  + +   
Sbjct: 234 DDAPDAGDTFNEESGEAKDAAADKKRRKKVTFHYPDGLTDYVKYLNKSKTAIHPTIVSFD 293

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              ++  +++A++WN GY ++V  F N I   +GGTH  G R+ALT  +  Y ++    K
Sbjct: 294 AKGEDHEVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLK 353

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           +   ++ GDDCREG  +V+S+K+ DP+F  QTK KL +SE++  V+  VN+ ++ W + +
Sbjct: 354 EKDGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDAN 413

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK I+ K + ++  R AAR+AR++ RRK   D+  LPGKLADC  +DPK SEL++VE
Sbjct: 414 PAEAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVE 473

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI ++ FD
Sbjct: 474 GDSAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEE-FD 532

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL- 550
           I KLRY KI++M DADVDG HI TLLLT  FR MP L+ +G +++  PPLY +   K   
Sbjct: 533 IKKLRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWSKGTP 592

Query: 551 QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
            Y   +   +  L             D           N  +                D 
Sbjct: 593 GYAFSDAERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRVDL 652

Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
              ++A          D     S  ++ A  + F+
Sbjct: 653 EDAQRADELFSILMGDDVSARRSFITRRAKDVRFL 687



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 8/88 (9%)

Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G    + I+    +QRYKGLGEMNA++LWETTL+P TR L RV + DA +AD+L
Sbjct: 602 DKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRVDLEDAQRADEL 661

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI   +     LDI
Sbjct: 662 FSILMGDDVSARRSFITRRAKDVRFLDI 689


>gi|37522075|ref|NP_925452.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421]
 gi|35213074|dbj|BAC90447.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421]
          Length = 644

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 283/596 (47%), Positives = 384/596 (64%), Gaps = 13/596 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YE++DN++DE+L G+
Sbjct: 1   MTE-----TYGAEQIQVLEGLEHVRKRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGH 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I ++L  DGS T++D+GRGIPTD H   G S  E ++T L AGGKF    YKVSGGL
Sbjct: 55  CKHIAISLGADGSATITDDGRGIPTDTHPRTGKSTIETVLTVLGAGGKFGGGGYKVSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG +VVNALS+ L   I REG  Y   F  GI +  L V+  +    GT ++FLP  +
Sbjct: 115 HGVGAAVVNALSTILTATIWREGKQYIQRFHRGIPEGGLAVSSDSQKRRGTMISFLPDPE 174

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+   DF++DTL  R REL+FLN+ V+    D R    R  +  Y+GGI  +V Y+ R 
Sbjct: 175 IFTTGVDFDFDTLLSRFRELAFLNAGVEFRFSDLRGETERTESYIYEGGIREYVKYMTRE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           K  L    I I   RD +S++ A++W  D Y++NVL F NNI   DGGTHL GL++ LTR
Sbjct: 235 KAALHPDIIFINQERDGVSVECALQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLTR 294

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
              S+  K+   K   +++ G+  REG T+VLS+K+P+P F  QTK KL + EVR +V+ 
Sbjct: 295 TFNSFARKANKLKDGDKNLTGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDG 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +++ L+ +LE HP     I++K L +    +AAR+ARDL RRK  L+ ++LPGKLADC 
Sbjct: 355 VISEKLTEYLEFHPDVVASILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP +SE+FLVEGDSAGGSAKQGR R  QAILPLRGKILN+ERA   K+  + EI  +I
Sbjct: 415 SRDPAESEVFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           T LG G+  + FD+ +LRYH+IIIMTDADVDGAHIRTLLLTFF+R    L+  G++YI +
Sbjct: 475 TGLGLGLKTEEFDVGRLRYHRIIIMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQ 534

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY I+    R   ++Y   E+  E  L     +++         G +  + L  
Sbjct: 535 PPLYKISIGGGRNIDVRYCYSEQEKEAILRGLRENQKYELQRFKGLGEMQADQLWE 590



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 126/339 (37%), Gaps = 44/339 (12%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDY 562
           D ++ G H+R  L      ++P+    G     +  P + GI  G   + + +       
Sbjct: 310 DKNLTGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDGVISEKLTEYLEFHPD 369

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID-----KLIKDFYPNHDKTFIEQAV 617
           ++   L + ++     +      DL                   +   P   + F+ +  
Sbjct: 370 VVASILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQSRDPAESEVFLVEGD 429

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW-----------------HGSINNS 660
            +G    +       ++       LN       K +                     +  
Sbjct: 430 SAGGSAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMITGLGLGLKTEEFDVG 489

Query: 661 DILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSL---ICNGDK 713
            +   RI   +     ++G+ I +    F  +YKR    +              I  G  
Sbjct: 490 RLRYHRII--IMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQPPLYKISIGGGRN 547

Query: 714 IKITGP------CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           I +          ++L  +    +    +QR+KGLGEM A QLWETT+NP+TR+L +V I
Sbjct: 548 IDVRYCYSEQEKEAILRGLRENQK--YELQRFKGLGEMQADQLWETTMNPETRTLRQVTI 605

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803
            DA++AD +F+ LMGD VEPRREFI+        + LDI
Sbjct: 606 EDAAEADRVFNILMGDRVEPRREFIETYGPRLQMADLDI 644


>gi|332522400|ref|ZP_08398652.1| DNA topoisomerase IV, B subunit [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313664|gb|EGJ26649.1| DNA topoisomerase IV, B subunit [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 649

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/623 (43%), Positives = 392/623 (62%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MAKKEISITNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I VT+N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNEIKVTINADGSVSVADSGRGMPTGKHA-MGIPTVQVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS WL++ I R+G++Y+  F N G   + L    SA    TGT VTF+P
Sbjct: 119 LHGVGSSVVNALSKWLEVEITRDGSVYKQRFENGGKPVSTLKKIASAPKSKTGTTVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V++SL D R  E       Y+ G++ FVSYL+
Sbjct: 179 DDSIFSTTDFKFNTIAERLKESAFLLKDVKMSLTDLRGEEAVTEEFHYENGVQDFVSYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I ++G      + +A+++NDG+ +N+L F NN+  KDGG+H +GL++A+T
Sbjct: 239 EDKETLTP-VIYVEGEDQEFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKTAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K   +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 298 KVMNDYARKTNLLKDKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDGIVSEKLTYFLLENGELATNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMTDILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F I ++ Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMVYTIGAGVGAD-FSIEEINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536

Query: 534 LYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY +++GK     + Y   +  LED          ++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKTAKVAYAWTDRELEDLRKEFGKGAMLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            +D   +  I   I D      +
Sbjct: 597 TMDPETRTLIRVTIDDLARAERR 619



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 12/261 (4%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMTDILKNEEINTMVYTIGAGVGADFSIEEINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKIT 717
           D ++           +   + + +F  +Y R                      G   K+ 
Sbjct: 501 DKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKTAKVA 558

Query: 718 ---GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                   L+ +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+
Sbjct: 559 YAWTDRE-LEDLRKEFGKGAMLQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAE 617

Query: 775 DLFSRLMGDEVEPRREFIQEN 795
              S LMGD+  PRR++I++N
Sbjct: 618 RRVSVLMGDKAAPRRQWIEDN 638


>gi|69251026|ref|ZP_00605191.1| Gram positive topoisomerase IV, subunit B [Enterococcus faecium DO]
 gi|68193894|gb|EAN08477.1| Gram positive topoisomerase IV, subunit B [Enterococcus faecium DO]
          Length = 665

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 265/648 (40%), Positives = 377/648 (58%), Gaps = 17/648 (2%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           ++GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   I VT++ D S TV+
Sbjct: 1   MEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSEIDVTIHEDNSITVA 59

Query: 78  DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137
           D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SVVNALS WL +
Sbjct: 60  DSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLIV 118

Query: 138 RIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
            I R+G  Y+  F N G  D  L   G      GT V FLP   IFS   F+Y+ L  RL
Sbjct: 119 TIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIFSTTKFSYEILAERL 178

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RE +FL   V+ISL D R  EP +    Y+ GI+ FV YL+  K  L    +   G ++ 
Sbjct: 179 RESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEEKDTLTP-VVYFSGEKEG 237

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+    Y  K    K+  ++
Sbjct: 238 IEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEYARKVGLLKERDKN 297

Query: 317 VIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
           + G D REG  +VLSI++P+   +F  QTKEKL +   R+VV++ +++ +  +L+E+   
Sbjct: 298 LEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVISEQMGFYLQENSEM 357

Query: 375 AKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           ++++V+K + A   R+AAR+AR+     +K     + L GKL     R+PKK+EL+LVEG
Sbjct: 358 SQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEG 417

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +G G+G   F I
Sbjct: 418 DSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSI 476

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
               Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY +++G+  + 
Sbjct: 477 EDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQ 536

Query: 553 VKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
           V +    +D    +I +     +       G ++   L         +D   +       
Sbjct: 537 VIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-----TMDPTSRTLIRVRI 591

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
               +          +  +     + + +   L       +K     I
Sbjct: 592 DDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDTEI 639



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 362 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 421

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 422 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 481

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 482 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 541

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 542 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 600

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 601 VTTLMGDKVEPRRKWIENH 619


>gi|255324004|ref|ZP_05365129.1| DNA gyrase, B subunit [Corynebacterium tuberculostearicum SK141]
 gi|255298861|gb|EET78153.1| DNA gyrase, B subunit [Corynebacterium tuberculostearicum SK141]
          Length = 689

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/695 (39%), Positives = 389/695 (55%), Gaps = 58/695 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +YDA SI IL+GL+AV+KRP MYIG T G  GLHH+I+E++DN++DE++ GY
Sbjct: 1   MAE---EHAYDAGSITILEGLEAVRKRPGMYIGST-GSRGLHHLIWEIVDNSVDEAMAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD +TV L  DG   V DNGRGIP ++H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 57  ADKVTVKLLEDGGVEVIDNGRGIPVEMHAS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IKR+G  +  +F N I D  +   G     TGT++ F    +
Sbjct: 116 HGVGISVVNALSTRVEAEIKRDGKHWYQNFQNAIPDELVE--GGNARGTGTKIRFWADPE 173

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221
           +F   +++YDT+  RL+E++FLN  + I LID+R  E +                     
Sbjct: 174 VFETTEYDYDTIARRLQEMAFLNKGLSIELIDERVTEEQIELEEIADAESGETSADETSF 233

Query: 222 ------------------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
                                         T  Y  G+  +V YL++ K  +  + +   
Sbjct: 234 DDAPDAGDTFNEESGEAEDAAAEKKRRKKVTFHYPDGLTDYVKYLNKSKTAIHPTIVSFD 293

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              ++  +++A++WN GY ++V  F N I   +GGTH  G R+ALT  +  Y ++    K
Sbjct: 294 AKGEDHEVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLK 353

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           +   ++ GDDCREG  +V+S+K+ DP+F  QTK KL +SE++  V+  VN+ ++ W + +
Sbjct: 354 EKDGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDAN 413

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK I+ K + ++  R AAR+AR++ RRK   D+  LPGKLADC  +DPK SEL++VE
Sbjct: 414 PAEAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVE 473

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI ++ FD
Sbjct: 474 GDSAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEE-FD 532

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL- 550
           I KLRY KI++M DADVDG HI TLLLT  FR MP L+ +G +++  PPLY +   K   
Sbjct: 533 IKKLRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWSKGTP 592

Query: 551 QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
            Y   +   +  L             D           N  +                D 
Sbjct: 593 GYAFSDAERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRVDL 652

Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
              ++A          D     S  ++ A  + F+
Sbjct: 653 EDAQRADELFSILMGDDVSARRSFITRRAKDVRFL 687



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 8/88 (9%)

Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G    + I+    +QRYKGLGEMNA++LWETTL+P TR L RV + DA +AD+L
Sbjct: 602 DKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRVDLEDAQRADEL 661

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI   +     LDI
Sbjct: 662 FSILMGDDVSARRSFITRRAKDVRFLDI 689


>gi|306827658|ref|ZP_07460937.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           pyogenes ATCC 10782]
 gi|304430139|gb|EFM33169.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           pyogenes ATCC 10782]
          Length = 650

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L +     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEII-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++A+++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAVQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++     +   D       + E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 60/76 (78%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RR+FI+EN++ S LDI
Sbjct: 635 RRDFIEENAVYSTLDI 650


>gi|297584211|ref|YP_003699991.1| DNA topoisomerase IV subunit B [Bacillus selenitireducens MLS10]
 gi|297142668|gb|ADH99425.1| DNA topoisomerase IV, B subunit [Bacillus selenitireducens MLS10]
          Length = 656

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 269/659 (40%), Positives = 384/659 (58%), Gaps = 20/659 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N  + +Y+ D+IQ+L+GLDAV+KRP MYIG TD   GLHH+++E++DN++DE L G+ + 
Sbjct: 2   NKNDFAYNDDAIQVLEGLDAVRKRPGMYIGSTD-HRGLHHLVFEIVDNSVDEILAGFGNE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           ITVT++ D S ++ D+GRG PT +H   G    EVI+T LHAGGKF Q  YK SGGLHGV
Sbjct: 61  ITVTIHKDQSVSIQDSGRGFPTGMH-RSGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL++ I R+G I +  F N G     L   G     TGT V F P   IF
Sbjct: 120 GASVVNALSEWLEVTIYRDGVISQQRFENGGKPATTLEKVGKTK-RTGTTVHFKPDEAIF 178

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+YDTL  RLRE +FL   V+I LID+R  EP   T  +  G+ AFV YL+  K  
Sbjct: 179 GSITFHYDTLAERLREAAFLIKGVKIELIDERGDEPERDTFQFDTGLVAFVDYLNEEKDI 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G  D I +D+A ++NDG+ EN+L F NN+  KDGGTH  G ++A+TR I  
Sbjct: 239 LHPVIQ-FEGVHDEIEVDIAFQYNDGFTENMLSFVNNVRTKDGGTHELGAKAAITRIINE 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           +  K    K+  +++ G D REGFT ++S+++P+   +F  QTK KL ++E RS V+  +
Sbjct: 298 HARKLALLKEKDKNLDGSDIREGFTGIISVRVPEEKLQFEGQTKAKLGTAEARSAVDQVI 357

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           +  L+ +LEE+P  + +++KK + AS  R+AAR+AR+     +K     A L GKL    
Sbjct: 358 SGKLAFFLEENPEFSHMLIKKAVKASQAREAARKAREDARNGKKNKRKDAMLSGKLTPAQ 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+   ++ ++EI T+I
Sbjct: 418 SRNPNKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEIRTII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G  +G   FD+  + Y KI+IMTDAD DGAHI+ LLLTFF+R M  L+  G +YI  
Sbjct: 478 YAIGGDVG-PDFDLENINYDKIVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRIYIAL 536

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           PPLY ++    + + ++Y  DE  L+  +        I       G +    L       
Sbjct: 537 PPLYKVSRGSGKKEIVEYAWDENGLQGAIDQVGKGY-ILQRYKGLGEMDATQLWET---- 591

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
             ++   +       +              +  +     +   +A  LN      +   
Sbjct: 592 -TMNPESRTLVRVTIEDVARAERHVSTLMGDKVEPRRKWIERNVAFGLNEDTNILDNDH 649



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 456 VINTEKAKLADIMKNEEIRTIIYAIGGDVGPDFDLENINYDKIVIMTDADTDGAHIQVLL 515

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI-------TGPCSLLDTIFSIGRKG 733
             F +      + + RI      +  +     K +I        G    +D +     KG
Sbjct: 516 LTFFYRYMRPLVEAGRIYIALPPLYKVSRGSGKKEIVEYAWDENGLQGAIDQV----GKG 571

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
             +QRYKGLGEM+A+QLWETT+NP++R+L+RV I D ++A+   S LMGD+VEPRR++I+
Sbjct: 572 YILQRYKGLGEMDATQLWETTMNPESRTLVRVTIEDVARAERHVSTLMGDKVEPRRKWIE 631

Query: 794 EN 795
            N
Sbjct: 632 RN 633


>gi|257076794|ref|ZP_05571155.1| DNA gyrase subunit B [Ferroplasma acidarmanus fer1]
          Length = 677

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 268/651 (41%), Positives = 379/651 (58%), Gaps = 19/651 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S +    +YDA  IQIL+GL AV+K P MYIG T G  GLHHM+YEV+DN IDE++ G+ 
Sbjct: 30  SMDKAMDNYDASQIQILEGLKAVRKVPGMYIGST-GPDGLHHMVYEVVDNCIDEAMAGFG 88

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I + +  DGS +V D+GRGIP D+H +      E++MT LH+G KF++K YKV+GGLH
Sbjct: 89  SDINIVIYKDGSISVEDDGRGIPVDIHPKYKRPGLEIVMTELHSGAKFDKKVYKVTGGLH 148

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----------TGSAGN--- 167
           GVGV VVNALS +L   +K+   IY   F  G+  + L V            G       
Sbjct: 149 GVGVHVVNALSDYLVAVVKKGTKIYYEKFQQGVPVSGLQVLDAKNKSADPEIGDIEMKYP 208

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           + GT + F P + IF   DF+Y  +  R+ +L+FLN ++ I L D RS +       + G
Sbjct: 209 EHGTIIKFYPDATIFDTIDFSYPVISQRIMDLAFLNPNITIELSDLRSGK--HEKFHFDG 266

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+  +V +LD+ K  + + PI  +       ++ A+++ D        F NNI   +GGT
Sbjct: 267 GLVEYVQFLDQGKDIVNKEPIYCREEYKEYVVEFALQYIDNVTGTEESFVNNIKTPEGGT 326

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++G  + L+R +  Y  K+    K    +IGDD REG T+VL +KM +P+F  QTKEKL
Sbjct: 327 HITGFHTGLSRAVLEYA-KAKNLVKGVSGLIGDDTREGLTAVLHVKMFNPQFEGQTKEKL 385

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +S V+S+V S     L  + E +P  A  I+K+VL A++ R+A+R+A+DL RRK  L+ 
Sbjct: 386 GNSVVKSIVSSITEKYLKDYFESYPPIADAIIKRVLAAAIAREASRKAKDLVRRKTALES 445

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            +LPGKLADCS  D  ++E+++VEGDSAGGSAKQ R+RE QAILPLRGKILNVE++  +K
Sbjct: 446 GTLPGKLADCSSSDSDQTEVYIVEGDSAGGSAKQARNREYQAILPLRGKILNVEKSNDNK 505

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
            L ++EI  LITA+GT I +D F+I  LRY KIIIMTDADVDGAHIRTLLLTFF+R M  
Sbjct: 506 ALENEEIKNLITAIGTNI-KDKFEIKNLRYGKIIIMTDADVDGAHIRTLLLTFFYRFMNE 564

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G +Y  +PPL+ + +G  + YV  E+  +  +     +  I+ F     +  +   
Sbjct: 565 LIQGGHIYFAQPPLFRVQKGNDIVYVFSEDEKDREVAKMGKNVVIQRFKGLGEMNPEQLW 624

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
              ++   +    +      +        +   V       E N      L
Sbjct: 625 ETTMNPESRKLVQVSIEDALYADQLFNILMGEKVEPRRKFIEDNAKYVQNL 675



 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 2/184 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   +       ++ N +  I    +  +         ++      V    +    
Sbjct: 495 ILNVEKSNDNKALENEEIKNLITAIGTNIKDKFEIKNLRYGKIIIMTDADVDGAHIRTLL 554

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +    + I    I      +  +    D + +         +  +G K + +QR+K
Sbjct: 555 LTFFYRFMNELIQGGHIYFAQPPLFRVQKGNDIVYVFSEDEKDREVAKMG-KNVVIQRFK 613

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT+NP++R L++V I DA  AD LF+ LMG++VEPRR+FI++N+    
Sbjct: 614 GLGEMNPEQLWETTMNPESRKLVQVSIEDALYADQLFNILMGEKVEPRRKFIEDNAKYVQ 673

Query: 800 ALDI 803
            LDI
Sbjct: 674 NLDI 677


>gi|194398307|ref|YP_002037488.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae G54]
 gi|194357974|gb|ACF56422.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae G54]
          Length = 647

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVMTLKKVGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|313904177|ref|ZP_07837556.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
 gi|313470979|gb|EFR66302.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
          Length = 646

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/627 (39%), Positives = 356/627 (56%), Gaps = 24/627 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  SYDA SIQ+L+GL+AV+ RP MYIG T G  GL+H+IYE++DN++DE L GY   I 
Sbjct: 3   KKDSYDASSIQVLEGLEAVRMRPGMYIGST-GRKGLNHLIYEIVDNSVDEHLAGYCTKIR 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L  DGSCTV+D+GRGIP ++H++ G+ A  V++T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 62  VVLEADGSCTVTDDGRGIPVNMHEK-GMPAERVVLTTLHAGGKFDNDAYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV------VTGSAGNDTGTEVTFLPSS 179
           SVVNALS ++ ++I R+G I+   F  G+    L         G    +TGT++ F+P  
Sbjct: 121 SVVNALSVFMDVQISRDGYIHHDRFEKGVPVMELAEDGLLPKIGKTK-NTGTKINFMPDG 179

Query: 180 DIFSVQD---FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI-TMFYKGGIEAFVSY 235
           +IF   +   F+ D L+ RL E  +LN ++ I  +D R  +  E  T     GI  FV  
Sbjct: 180 EIFETYEKSGFSADDLKSRLHETCYLNPNLVIEFVDLRPGKNNEEVTYSEPEGIIGFVKE 239

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++  ++ L   P+  +G  D I +++A ++   + ENVL F NNI   +GGTH++G + A
Sbjct: 240 INAKEEKLH-DPVFFKGEADGIMVEVAFQYVKDFQENVLGFCNNIYNSEGGTHITGFKQA 298

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
            T  + +Y  +    K    +  G D R G T+++SIK PDPRF  QTK KL + +    
Sbjct: 299 FTTIMNNYAREIGVLKDKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKA 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
                 D +  + + +    K +++    ++ +R    +A+     K         GKLA
Sbjct: 359 AGKVTGDEVVRYFDRNLPVLKTVLECAERSAKIRKTEEKAKTNMLTKQK-YSFDANGKLA 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           +C  RD  K E+F+VEGDSAGGSAK  R+R  QAI P+RGKILNVE+A  DK+L++ EI 
Sbjct: 418 NCESRDASKCEIFIVEGDSAGGSAKMARNRMYQAIFPIRGKILNVEKATIDKVLANAEIK 477

Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           ++I A G G  +   + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI  G
Sbjct: 478 SMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHIATLLLTLFYRFMPELIFQG 537

Query: 533 FLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
            +YI  PPLY         +Y+ D+++LE Y    +  + +       G +    L +  
Sbjct: 538 HVYIAMPPLYKTQPSKGEGEYLYDDKALERYRKKHAGEKFVLQRYKGLGEMDPQQLWDTT 597

Query: 592 -----DDALKIDKLIKDFYPNHDKTFI 613
                    +++           +  +
Sbjct: 598 LDPDKRKMRRVEIEDARMASEMTEILM 624



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 49/68 (72%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLW+TTL+PD R + RV+I DA  A ++   LMG++V PR+ FI  +
Sbjct: 579 LQRYKGLGEMDPQQLWDTTLDPDKRKMRRVEIEDARMASEMTEILMGNDVPPRKAFIYNH 638

Query: 796 SLPSALDI 803
           +  + LD+
Sbjct: 639 AADAELDV 646


>gi|313890229|ref|ZP_07823864.1| DNA topoisomerase IV, B subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121590|gb|EFR44694.1| DNA topoisomerase IV, B subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 649

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 274/623 (43%), Positives = 394/623 (63%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MAKKEISITNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I VT+N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNEIKVTINADGSVSVADSGRGMPTGKHA-MGIPTVQVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS WL++ I R+G++Y+  F N G   + L    SA    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSKWLEVEITRDGSVYKQRFENGGKPVSTLKKIASAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V++SL D R  E       Y+ G++ FVSYL+
Sbjct: 179 DDSIFSTTDFKFNTIAERLKESAFLLKDVKMSLTDLRGEEAVTEEFHYENGVQDFVSYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I ++G   +  + +A+++NDG+ +N+L F NN+  KDGG+H +GL++A+T
Sbjct: 239 EDKETLTP-VIYVEGEEQDFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKTAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K   +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 298 KVMNDYARKTSLLKDKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           VE  V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VEGIVSEKLTYFLLENGELATNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMTDILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F I ++ Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMVYTIGAGVGAD-FRIEEINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536

Query: 534 LYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY +++GK     + Y   +  LED          ++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKTAKVSYAWTDGELEDLRREFGKGAMLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            +D   +  I   I D      +
Sbjct: 597 TMDPETRTLIRVTIDDLARAERR 619



 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 100/260 (38%), Gaps = 10/260 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMTDILKNEEINTMVYTIGAGVGADFRIEEINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKIT 717
           D ++           +   + + +F  +Y R                      G   K++
Sbjct: 501 DKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKTAKVS 558

Query: 718 G--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                  L+ +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ 
Sbjct: 559 YAWTDGELEDLRREFGKGAMLQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAER 618

Query: 776 LFSRLMGDEVEPRREFIQEN 795
             S LMGD+  PRR++I++N
Sbjct: 619 RVSVLMGDKAAPRRQWIEDN 638


>gi|73916414|gb|AAZ93075.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916448|gb|AAZ93092.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916454|gb|AAZ93095.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916456|gb|AAZ93096.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916458|gb|AAZ93097.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916464|gb|AAZ93100.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/623 (44%), Positives = 390/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG   VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEG+SAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGNSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|302520521|ref|ZP_07272863.1| DNA gyrase, B subunit [Streptomyces sp. SPB78]
 gi|318057387|ref|ZP_07976110.1| DNA gyrase subunit B [Streptomyces sp. SA3_actG]
 gi|318079451|ref|ZP_07986783.1| DNA gyrase subunit B [Streptomyces sp. SA3_actF]
 gi|302429416|gb|EFL01232.1| DNA gyrase, B subunit [Streptomyces sp. SPB78]
          Length = 718

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 287/653 (43%), Positives = 394/653 (60%), Gaps = 27/653 (4%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + +I  SSYDA++I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+A
Sbjct: 54  TSSIAESSYDANAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHA 112

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLH
Sbjct: 113 DTIDVTILPDGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 172

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+ +++ +K +G+++   +  G+   PL   G A  + GT VTF    D+
Sbjct: 173 GVGVSVVNALSTRVEVEVKTDGHVWTQQYERGVPIAPLHK-GEATQEHGTSVTFWADGDV 231

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREIT 222
           F   +++++TL  R +E++FLN  + I L D+R                    PE R +T
Sbjct: 232 FETTEYSFETLARRFQEMAFLNKGLTIKLTDERDSAKATAGADSAEVVDAEEAPEARTVT 291

Query: 223 MFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNN 279
             Y+GGI  FV Y   R  + +  S I ++       +S+++AM+WN GY E V  F N 
Sbjct: 292 YHYEGGIVDFVKYLNSRKGEVIHPSVIDVEAEDKEKLLSVEVAMQWNAGYTEGVYSFANT 351

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R ALT  +  Y       ++   ++ GDD REG T+++S+K+ +P+F
Sbjct: 352 IHTHEGGTHEEGFRGALTTIVNKYARDKKLLREKDGNLTGDDIREGLTAIISVKLGEPQF 411

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++E R+ V+  V + L+ W + +P EA  I++K + A+  R AAR+ARDLT
Sbjct: 412 EGQTKTKLGNTEARTFVQKIVYERLADWFDRNPNEASDIIRKGISAATARVAARKARDLT 471

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR    QAILP+RGKILN
Sbjct: 472 RRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILN 531

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR DK+L +QEI  LI+A G G+  D FDI KLRYHKII+M DADVDG HI TLLLT
Sbjct: 532 VEKARVDKILHNQEIQALISAFGAGV-HDDFDIEKLRYHKIILMADADVDGQHINTLLLT 590

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           F FR M  L+  G +Y+ +PPLY I  GK        +   D LI         L   + 
Sbjct: 591 FLFRFMRPLVEAGHVYLSRPPLYKIKWGKDDVDYAYSDRERDALITLGRENGKRLREGAV 650

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                  L     + L++  + +D       T  + A    +F+    +++  
Sbjct: 651 QRFKG--LGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADDLFSVLMGEDVEA 701



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 6/89 (6%)

Query: 720 CSLLDTI-FSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              L T+    G++   G ++QR+KGLGEM+A +L  TT++ D R L +V + DA+QADD
Sbjct: 631 RDALITLGRENGKRLREG-AVQRFKGLGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADD 689

Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           LFS LMG++VE RR+FIQ N+     LDI
Sbjct: 690 LFSVLMGEDVEARRQFIQRNAKDVRFLDI 718


>gi|197311443|gb|ACH61925.1| DNA gyrase beta subunit [Acholeplasma sp. N93]
          Length = 549

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 269/554 (48%), Positives = 364/554 (65%), Gaps = 6/554 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T GE GLHH+++E++DN+IDE+L GYA  I V +       V+DNGRGIP D+H + G
Sbjct: 1   GST-GERGLHHLVWEIVDNSIDEALAGYASTIKVEVLPGDIIQVTDNGRGIPVDIHPKTG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
             A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS+W K+ I ++G  YE  +  
Sbjct: 60  RPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSTWYKVEIHKDGTAYEQRYEY 119

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           GI    L + G   + TGT  TFL    IF     +N +TL++R+++L+FLN  + I+LI
Sbjct: 120 GIPAYDLKIIGPT-DKTGTITTFLADPKIFTETTHYNIETLKNRIQQLAFLNKGLMITLI 178

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D R+ E  E T  Y+GGI  +V YL++ K  +    I I   +D I++++A+++ D Y  
Sbjct: 179 DSRTEERYEETFHYEGGIIEYVHYLNQSKSKIHPEVIYIDKEQDGITVEIALQYVDSYSP 238

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  FTNNI   +GG H  G + ALTR ++ Y +          ++ G+D REG T+++S
Sbjct: 239 NIYSFTNNISTTEGGMHEDGFKLALTRVLSKYADDQKMK--KDDAISGEDTREGLTAIIS 296

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K P+P+F  QTK KL + EVRS+      + L  +L E+P +AK IV+KV+ A+  R A
Sbjct: 297 VKHPEPQFEGQTKTKLGNPEVRSITSQITQEALERFLLENPAQAKSIVEKVILATRARVA 356

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+A++LTRRK  LD      KLADC  +DP+KSEL++VEGDSAGGSAKQGR  E QAIL
Sbjct: 357 ARKAKELTRRKSPLDALGFASKLADCRSKDPEKSELYIVEGDSAGGSAKQGRDSEFQAIL 416

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR DKML+++EI  LI A+GTGI  D FDI K RYHKI+IMTDADVDGA
Sbjct: 417 PLRGKVLNVEKARLDKMLNNKEIVNLIQAMGTGI-SDEFDITKSRYHKIVIMTDADVDGA 475

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF FR M  LI  G++Y  +PPLY IT GK+L Y   +E +   +        
Sbjct: 476 HIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKITWGKNLVYAYSDEEMNAVVAKAESKPS 535

Query: 572 IELFCDSKGVISKN 585
           I+ +     + ++ 
Sbjct: 536 IQRYKGLGEMNAEQ 549



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSL 707
            G  +  DI   R  + V      ++G+ I +    +  R     I+  Y+      L  
Sbjct: 448 TGISDEFDITKSRYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 507

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749
           I  G  +        ++ + +      S+QRYKGLGEMNA Q
Sbjct: 508 ITWGKNLVYAYSDEEMNAVVAKAESKPSIQRYKGLGEMNAEQ 549


>gi|15922995|ref|NP_370529.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925710|ref|NP_373243.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315]
 gi|156978336|ref|YP_001440595.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316843|ref|ZP_04840056.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253730404|ref|ZP_04864569.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|254663939|ref|ZP_05143411.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793543|ref|ZP_05642522.1| DNA gyrase, B subunit [Staphylococcus aureus A9781]
 gi|258411151|ref|ZP_05681430.1| DNA gyrase subunit B [Staphylococcus aureus A9763]
 gi|258420945|ref|ZP_05683879.1| DNA gyrase, B subunit [Staphylococcus aureus A9719]
 gi|258438584|ref|ZP_05689807.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299]
 gi|258443960|ref|ZP_05692298.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115]
 gi|258446224|ref|ZP_05694384.1| DNA gyrase, B subunit [Staphylococcus aureus A6300]
 gi|258449117|ref|ZP_05697223.1| DNA gyrase, B subunit [Staphylococcus aureus A6224]
 gi|258454405|ref|ZP_05702373.1| DNA gyrase, B subunit [Staphylococcus aureus A5937]
 gi|269201695|ref|YP_003280964.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282894284|ref|ZP_06302514.1| DNA gyrase, B subunit [Staphylococcus aureus A8117]
 gi|282927755|ref|ZP_06335369.1| DNA gyrase, B subunit [Staphylococcus aureus A10102]
 gi|295406869|ref|ZP_06816673.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819]
 gi|296275682|ref|ZP_06858189.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MR1]
 gi|297245904|ref|ZP_06929766.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796]
 gi|54037243|sp|P66937|GYRB_STAAN RecName: Full=DNA gyrase subunit B
 gi|54041556|sp|P66936|GYRB_STAAM RecName: Full=DNA gyrase subunit B
 gi|13699922|dbj|BAB41221.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315]
 gi|14245772|dbj|BAB56167.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720471|dbj|BAF76888.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725884|gb|EES94613.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257787515|gb|EEV25855.1| DNA gyrase, B subunit [Staphylococcus aureus A9781]
 gi|257840036|gb|EEV64501.1| DNA gyrase subunit B [Staphylococcus aureus A9763]
 gi|257843135|gb|EEV67550.1| DNA gyrase, B subunit [Staphylococcus aureus A9719]
 gi|257848143|gb|EEV72135.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299]
 gi|257850844|gb|EEV74788.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115]
 gi|257855050|gb|EEV77993.1| DNA gyrase, B subunit [Staphylococcus aureus A6300]
 gi|257857550|gb|EEV80445.1| DNA gyrase, B subunit [Staphylococcus aureus A6224]
 gi|257863499|gb|EEV86259.1| DNA gyrase, B subunit [Staphylococcus aureus A5937]
 gi|262073985|gb|ACY09958.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282590515|gb|EFB95593.1| DNA gyrase, B subunit [Staphylococcus aureus A10102]
 gi|282763329|gb|EFC03459.1| DNA gyrase, B subunit [Staphylococcus aureus A8117]
 gi|285815732|gb|ADC36219.1| DNA gyrase subunit B [Staphylococcus aureus 04-02981]
 gi|294968334|gb|EFG44359.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819]
 gi|297177269|gb|EFH36522.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796]
 gi|312828568|emb|CBX33410.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129548|gb|EFT85540.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725845|gb|EGG62324.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21172]
 gi|329732607|gb|EGG68957.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21193]
          Length = 644

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NKIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|57868974|gb|AAW57480.1| gyrase B [Candidatus Regiella insecticola]
          Length = 634

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 294/637 (46%), Positives = 405/637 (63%), Gaps = 11/637 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVG+SVVNALS  L+L I REG I+E +++ G    PL + G     TG
Sbjct: 1   DNSYKVSGGLHGVGISVVNALSEKLELVIHREGKIHEQTYMMGEPQTPLRIVGETA-QTG 59

Query: 171 TEVTFLPS-SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS     +  +F YD L  RLRELSFLNS + I L D+R  +       Y+GGI
Sbjct: 60  TRVRFWPSLQTFTNNTEFQYDPLAKRLRELSFLNSGISIKLHDERDNKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFV YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 RAFVEYLNKNKNPIHPKIFYFSTIKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRTAMTRTLNSYMDKEGYNKKTKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+  
Sbjct: 238 SEVKTAVETLMNEKLIEYLLENPTDAKIVVNKIIDAARAREAARRAREMTRRKGALDLGG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SSQE+ TLITALG GIG+D +D +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I
Sbjct: 358 SSQEVATLITALGCGIGRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEII 417

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G ++I +PPLY + +GK  QY+KD+E++E Y I+ +L             ++   L  
Sbjct: 418 ERGHVFIAQPPLYKVKKGKQEQYIKDDEAMEQYQISLALDGAALHTNAYAPALAGQALEK 477

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE 647
            I +   + K+I      + +  +   +       E+  ++E        L   LN   +
Sbjct: 478 LITEHYAVQKIIARMERRYPRALLNHLIYQPNLLQETLANKETVQQWIDSLVILLNQNEQ 537

Query: 648 KSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
           +          +      + L++    GV   + L+   I S   +       ++     
Sbjct: 538 QGSHYSAIVRENTERQLFEPLLRTRTHGVDTDYPLDFDFIHSGEYRKLCQLGEKLRGLLE 597

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRY 739
               +   G ++ +    + LD +    R+G+++QRY
Sbjct: 598 QDAFVERGGRRLAVDSFEAALDWLVKESRRGLTIQRY 634


>gi|269124013|ref|YP_003306590.1| DNA gyrase, B subunit [Streptobacillus moniliformis DSM 12112]
 gi|268315339|gb|ACZ01713.1| DNA gyrase, B subunit [Streptobacillus moniliformis DSM 12112]
          Length = 660

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/663 (41%), Positives = 384/663 (57%), Gaps = 30/663 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y  +SI +L+GLDAV+ RP MYIG T    GLHH+++E++DN+IDE+L G  D I
Sbjct: 1   MSEKNYGGESITVLEGLDAVRVRPGMYIGTTSS-RGLHHLVWEIVDNSIDEALAGVCDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TV +  D    + DNGRGIPTD+H + G S  EV+MT LHAGGKF+  +Y+ SGGLHGVG
Sbjct: 60  TVKMLPDSEIEIIDNGRGIPTDMH-KSGKSTLEVVMTVLHAGGKFDNSNYQFSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  L+  + R+G +    F  G      +  G A     GT + F P +DIF 
Sbjct: 119 ISVVNALSEKLEATVTRDGRVVRQIFSKGNAITEALEIGKAPAKAHGTTIKFKPDADIFE 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              F+YD LQ RL+EL++LN  ++I LID ++  + +E   +++GGI  FV+     +  
Sbjct: 179 TIQFDYDILQRRLKELAYLNQGIKIILIDARKPEKVKEEVFYFEGGIVDFVTE-LVGEDK 237

Query: 243 LMQSPIRI-------QGS---------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           +++  I +       +G               +++AM + +        F NNI   DGG
Sbjct: 238 IIEDVIYMKDRVMLTEGEVDDEGNPIPDKYSEVEIAMIYKNSQSTIEYSFVNNINTSDGG 297

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH+SGLR+ALTR I     +       K    G+D REG   VLS+K P+P+F SQTK K
Sbjct: 298 THVSGLRTALTRTINDLARE----ASSKNEFKGEDVREGLVYVLSLKFPEPQFESQTKAK 353

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L SSE  S+V       L  +LE+HP + K I+ K+  +   R+AA+RARDL  +K    
Sbjct: 354 LGSSEATSIVSGVFGSKLKMYLEDHPKDCKTIIDKIAISKQAREAAKRARDLVTKKNEFS 413

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +  LPGKLADC  ++P++SE+F+VEGDSAGGSAKQGR +E QAILPLRGKILNVE+A   
Sbjct: 414 LGGLPGKLADCQSKNPEESEIFIVEGDSAGGSAKQGRFKEYQAILPLRGKILNVEKANEH 473

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           K+L + EI  +ITA G G G D FDI KLRYHKIIIMTDADVDGAHIRTL+LTFF+R + 
Sbjct: 474 KILENSEIKAMITAFGAGFG-DRFDIEKLRYHKIIIMTDADVDGAHIRTLMLTFFYRYLR 532

Query: 527 SLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
            LI+NG +YI +PPLY +T    + + ++Y   +E L+           ++    +K  +
Sbjct: 533 ELINNGHIYIAQPPLYKVTTKSGKKEQVKYAYSDEQLKSITRVLDEKLGVDNSGKNKYNV 592

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
            +      ++     +  +        K  +E A  +         +        +    
Sbjct: 593 QRYKGLGEMNPDQLKETTMDPDVRTLLKVTLEDAQYADKMFSILMGDKVEPRREFIEEHA 652

Query: 643 NFI 645
           N++
Sbjct: 653 NYV 655



 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 14/197 (7%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   E  +   S++   +          +         ++      V    +    
Sbjct: 464 ILNVEKANEHKILENSEIKAMITAFGAGFGDRFDIEKLRYHKIIIMTDADVDGAHIRTLM 523

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKI---TGPCSL--LDTIFSI----- 729
             F +    + I +  I      +  +    G K ++        L  +  +        
Sbjct: 524 LTFFYRYLRELINNGHIYIAQPPLYKVTTKSGKKEQVKYAYSDEQLKSITRVLDEKLGVD 583

Query: 730 --GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
             G+   ++QRYKGLGEMN  QL ETT++PD R+LL+V + DA  AD +FS LMGD+VEP
Sbjct: 584 NSGKNKYNVQRYKGLGEMNPDQLKETTMDPDVRTLLKVTLEDAQYADKMFSILMGDKVEP 643

Query: 788 RREFIQENSLPS-ALDI 803
           RREFI+E++     LDI
Sbjct: 644 RREFIEEHANYVRNLDI 660


>gi|111219512|ref|YP_710306.1| DNA gyrase subunit B [Frankia alni ACN14a]
 gi|111147044|emb|CAJ58691.1| DNA gyrase subunit B [Frankia alni ACN14a]
          Length = 656

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 283/589 (48%), Positives = 376/589 (63%), Gaps = 10/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +  +YDA SI++L+GLDAV+KRP MYIG T GE GLHH++YEV+DNA+DE+L GY D
Sbjct: 8   EGTRRVAYDASSIKVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEALAGYCD 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            ITV+L  DG+  V DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHG
Sbjct: 67  TITVSLLADGAVRVVDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L + I+ +G+++   ++      PL V       TGT VTF     IF
Sbjct: 127 VGVSVVNALSTKLDVEIQVDGHVWFQPYVGTRPAAPL-VKTGTTKKTGTSVTFWADPTIF 185

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              ++ ++TL  RL+E++FLN  + I+LID+R  E  E+T  Y  G+  FV++L+  K  
Sbjct: 186 ETTEYKFETLSRRLQEMAFLNKGLSITLIDERPEERLEVTYKYTNGLVDFVAHLNATKDA 245

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + +S I ++     I  +LAM+WN GY E+V  F N I   +GGTH  G R+ALT  + +
Sbjct: 246 IHRSVISLESKGVGIEAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAALTSAVNA 305

Query: 303 YVEKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           Y +     K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +  
Sbjct: 306 YAKDQNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKF 365

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+      L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLA
Sbjct: 366 VQEMCYSALKDWFEVNRTEARAIVSKSLDAQRARIAARQARDLTRRKGLLGGTGLPGKLA 425

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC   DP++ EL++VEGDSAGGSAK GR  + QAILPLRGKILNVE+AR D++L + E+ 
Sbjct: 426 DCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQ 485

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALGTGI  D FDI KLRYHKI++M DADVDG HIRTLLLT  FR M  L+  G ++
Sbjct: 486 ALIQALGTGI-HDDFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGHVF 544

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           + +PPLY I  G+        +   D L+ + +    +L  D+      
Sbjct: 545 LAQPPLYKIKWGREDWEYAYSDRERDGLVQRGVEAGRKLPKDAIQRFKG 593



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS LMG++V+ RR FIQ N
Sbjct: 588 IQRFKGLGEMNATELWDTTMDPDKRILLQVTLDDAAVADELFSVLMGEDVDARRSFIQRN 647

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 648 AKDVRFLDI 656


>gi|300214581|gb|ADJ78997.1| Topoisomerase IV subunit B [Lactobacillus salivarius CECT 5713]
          Length = 673

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 269/667 (40%), Positives = 391/667 (58%), Gaps = 15/667 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++Y+ DSIQ+LKGL+AV+KRP MYIG TD   GLHH++YE+ DNA+DE+L GY   I
Sbjct: 1   MPKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIFDNAVDEALSGYGKEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D S TV DNGRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 60  NVIIHKDDSITVVDNGRGMPVGMHS-MGIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSS L +   R+G  YE  F+N G     L   G A   +GT+VTF P ++IFS
Sbjct: 119 ASVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFS 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +N++TL  RLRE +FL   V+I+L D+R+    E    Y  GI+ FV YL+  K  L
Sbjct: 179 TTKYNFNTLAERLRESAFLLKGVKITLTDERTDPYTEEEFLYAEGIKEFVEYLNEDKDVL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               +  +G +D I +++A ++NDGY E ++ F NN+  KDGGTH +G+++A T+    Y
Sbjct: 239 GP-VMYFEGKKDGIEVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAAWTKAFNEY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K   +++ G D REG ++V+S+++P+   +F  QTK KL + E R +V+S VN
Sbjct: 298 ARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEARQIVDSVVN 357

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           + L  +L E+   A+ +V+K + A   R+AAR+ARD     +K       L GKL     
Sbjct: 358 EQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQS 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ K++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   ++ ++EI T+I 
Sbjct: 418 KNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIY 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G + F+I+   Y K+IIMTDAD DGAHI+TLLLTFF++ M  +I+ G +YI  P
Sbjct: 478 TIGAGVGAE-FNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALP 536

Query: 540 PLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PLY I +       ++Y   +  LE           ++ +     + +       ++   
Sbjct: 537 PLYKIEKTVKKKRVIKYAWTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPET 596

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           +    ++       +  +   +   V       E NV     L    + +     +  HG
Sbjct: 597 RTLVRVRIDDDTIAEKRVTTLMGDKVEPRRKWIEKNVKFT--LEEDGSLLDTVVAEGAHG 654

Query: 656 SINNSDI 662
            I++  +
Sbjct: 655 EISDDKL 661



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++                      S  +          ++   ++     
Sbjct: 375 VRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQSKNAKRNELFLVEGDSAG 434

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N +  +  ++    ++   +  I       ++    N 
Sbjct: 435 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIYTIGAGVGAEFNIDDANY 494

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIKITG 718
           D ++           +      F +      I + R+      +  +       ++    
Sbjct: 495 DKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKIEKTVKKKRVIKYA 554

Query: 719 PCSL-LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L++     +KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV+I D + A+   
Sbjct: 555 WTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPETRTLVRVRIDDDTIAEKRV 614

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 615 TTLMGDKVEPRRKWIEKN 632


>gi|227890873|ref|ZP_04008678.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius ATCC
           11741]
 gi|227867282|gb|EEJ74703.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius ATCC
           11741]
          Length = 690

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 269/669 (40%), Positives = 392/669 (58%), Gaps = 15/669 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            ++  ++Y+ DSIQ+LKGL+AV+KRP MYIG TD   GLHH++YE+ DNA+DE+L GY  
Sbjct: 16  KSMPKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIFDNAVDEALSGYGK 74

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V ++ D S TV DNGRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHG
Sbjct: 75  EINVIIHKDDSITVVDNGRGMPVGMHS-MGIPTVEVIFTVLHAGGKFGQGDYKTSGGLHG 133

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALSS L +   R+G  YE  F+N G     L   G A   +GT+VTF P ++I
Sbjct: 134 VGASVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANI 193

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   +N++TL  RLRE +FL   V+I+L D+R+    E    Y  GI+ FV YL+  K 
Sbjct: 194 FSTTKYNFNTLAERLRESAFLLKGVKITLTDERTDPYTEEEFLYAEGIKEFVEYLNEDKD 253

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L    +  +G +D I +++A ++NDGY E ++ F NN+  KDGGTH +G+++A T+   
Sbjct: 254 VLGP-VMYFEGKKDGIEVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAAWTKAFN 312

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359
            Y  K    K   +++ G D REG ++V+S+++P+   +F  QTK KL + E R +V+S 
Sbjct: 313 EYARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEARQIVDSV 372

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADC 417
           VN+ L  +L E+   A+ +V+K + A   R+AAR+ARD     +K       L GKL   
Sbjct: 373 VNEQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPA 432

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
             ++ K++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   ++ ++EI T+
Sbjct: 433 QSKNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTM 492

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I  +G G+G + F+I+   Y K+IIMTDAD DGAHI+TLLLTFF++ M  +I+ G +YI 
Sbjct: 493 IYTIGAGVGAE-FNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIA 551

Query: 538 KPPLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
            PPLY I +       ++Y   +  LE           ++ +     + +       ++ 
Sbjct: 552 LPPLYKIEKTVKKKRVIKYAWTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNP 611

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
             +    ++       +  +   +   V       E NV     L    + +     +  
Sbjct: 612 ETRTLVRVRIDDDTIAEKRVTTLMGDKVEPRRKWIEKNVKFT--LEEDGSLLDTVVAEGA 669

Query: 654 HGSINNSDI 662
           HG I++  +
Sbjct: 670 HGEISDDKL 678



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++                      S  +          ++   ++     
Sbjct: 392 VRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQSKNAKRNELFLVEGDSAG 451

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N +  +  ++    ++   +  I       ++    N 
Sbjct: 452 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIYTIGAGVGAEFNIDDANY 511

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIKITG 718
           D ++           +      F +      I + R+      +  +       ++    
Sbjct: 512 DKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKIEKTVKKKRVIKYA 571

Query: 719 PCSL-LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L++     +KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV+I D + A+   
Sbjct: 572 WTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPETRTLVRVRIDDDTIAEKRV 631

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 632 TTLMGDKVEPRRKWIEKN 649


>gi|323439694|gb|EGA97412.1| DNA gyrase subunit B [Staphylococcus aureus O11]
          Length = 644

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEYRALLQVKLEDAIEADQTFEMLMGDV 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|257887681|ref|ZP_05667334.1| gram positive topoisomerase IV [Enterococcus faecium 1,141,733]
 gi|257896175|ref|ZP_05675828.1| gram positive topoisomerase IV [Enterococcus faecium Com12]
 gi|257823735|gb|EEV50667.1| gram positive topoisomerase IV [Enterococcus faecium 1,141,733]
 gi|257832740|gb|EEV59161.1| gram positive topoisomerase IV [Enterococcus faecium Com12]
          Length = 665

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 265/648 (40%), Positives = 377/648 (58%), Gaps = 17/648 (2%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           ++GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   I VT++ D S TV+
Sbjct: 1   MEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSEIDVTIHEDNSITVA 59

Query: 78  DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137
           D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SVVNALS WL +
Sbjct: 60  DSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLTV 118

Query: 138 RIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
            I R+G  Y+  F N G  D  L   G      GT V FLP   IFS   F+Y+ L  RL
Sbjct: 119 TIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTIFSTTKFSYEILAERL 178

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RE +FL   V+ISL D R  EP +    Y+ GI+ FV YL+  K  L    +   G ++ 
Sbjct: 179 RESAFLLKGVKISLSDLRGEEPVKEVFHYEEGIKEFVDYLNEEKDTLTP-VVYFSGEKEG 237

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+    Y  K    K+  ++
Sbjct: 238 IEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEYARKVGLLKERDKN 297

Query: 317 VIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
           + G D REG  +VLSI++P+   +F  QTKEKL +   R+VV++ +++ +  +L+E+   
Sbjct: 298 LEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVISEQMGFYLQENSEM 357

Query: 375 AKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           ++++V+K + A   R+AAR+AR+     +K     + L GKL     R+PKK+EL+LVEG
Sbjct: 358 SQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEG 417

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +G G+G   F I
Sbjct: 418 DSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSI 476

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
               Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY +++G+  + 
Sbjct: 477 EDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQ 536

Query: 553 VKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
           V +    +D    +I +     +       G ++   L         +D   +       
Sbjct: 537 VIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-----TMDPTSRTLIRVRI 591

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
               +          +  +     + + +   L       +K     I
Sbjct: 592 DDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDTEI 639



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 362 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 421

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 422 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 481

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 482 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 541

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 542 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 600

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 601 VTTLMGDKVEPRRKWIENH 619


>gi|332686601|ref|YP_004456375.1| DNA topoisomerase IV subunit B [Melissococcus plutonius ATCC 35311]
 gi|332370610|dbj|BAK21566.1| DNA topoisomerase IV subunit B [Melissococcus plutonius ATCC 35311]
          Length = 686

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 268/668 (40%), Positives = 394/668 (58%), Gaps = 15/668 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I N++Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+
Sbjct: 1   MAKKI-NNAYNDTSIQVLEGLEAVRKRPGMYIGSTD-HRGLHHLVYEIVDNAVDEALSGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+  D S  ++D GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNDIQVTIQKDNSIKIADLGRGMPVGIHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++RI R+G  Y   F N G     L   G      GT VTFLP  
Sbjct: 118 HGVGASVVNALSKWLEVRIVRDGIEYMERFENGGKPVGTLEKVGKTKKPNGTVVTFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y  L  RLRE +FL   ++I+L D R  EP++    YK GI+ FVSYL+  
Sbjct: 178 TIFSTIQFSYTNLAERLRESAFLLKDIKITLTDLREDEPKQEIFHYKEGIKEFVSYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G ++ I ++L+ ++NDGY ENVL F NN+  KDGGTH  G+++A+TR 
Sbjct: 238 KDTLTP-IVYFNGEKEGIEVELSYQYNDGYSENVLSFVNNVRTKDGGTHEIGMKTAMTRA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K+  +++ G D REG  ++LSI++P+   +F  QTKEKL + + R+ V+
Sbjct: 297 YNEYARRIGLLKERDKNLEGSDFREGLAAILSIRVPESLLQFEGQTKEKLGTPQARNSVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S + + +S +L+E+   ++ +++K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 SVIGEQMSYYLQENSELSQTLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F+I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 477 TMIYTIGAGVG-PEFNIEDCNYDKVIIMTDADTDGAHIQILLLTFFYRYMKPLIEAGKVY 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    +   ++Y   +E L+D + +      ++ +     + ++      +
Sbjct: 536 IALPPLYKVSKGSGKKAQIEYAWTDEELKDVIQSIGKGYMLQRYKGLGEMNAEQLWETTM 595

Query: 592 -DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             ++  + ++  D     ++                 +        +  + L+    + E
Sbjct: 596 APESRTLIRVRIDDTAQAERRVTTLMGDKVEPRRNWIETHVQFSLEEDGSILDRKENQKE 655

Query: 651 KSWHGSIN 658
            S   S  
Sbjct: 656 ISASVSNE 663



 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 108/277 (38%), Gaps = 5/277 (1%)

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
            +  S        + +  +    + +  +    +   E     +    E  L        
Sbjct: 360 GEQMSYYLQENSELSQTLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 419

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           S+N  +N +                  K      +   V N E  +  ++    ++   +
Sbjct: 420 SRNPQKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 479

Query: 643 NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
             I       ++    N D ++           +      F +      I + ++     
Sbjct: 480 YTIGAGVGPEFNIEDCNYDKVIIMTDADTDGAHIQILLLTFFYRYMKPLIEAGKVYIALP 539

Query: 703 TILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
            +  +    G K +I        L D I SIG KG  +QRYKGLGEMNA QLWETT+ P+
Sbjct: 540 PLYKVSKGSGKKAQIEYAWTDEELKDVIQSIG-KGYMLQRYKGLGEMNAEQLWETTMAPE 598

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +R+L+RV+I D +QA+   + LMGD+VEPRR +I+ +
Sbjct: 599 SRTLIRVRIDDTAQAERRVTTLMGDKVEPRRNWIETH 635


>gi|325955726|ref|YP_004286336.1| DNA gyrase subunit B [Lactobacillus acidophilus 30SC]
 gi|325332291|gb|ADZ06199.1| DNA gyrase subunit B [Lactobacillus acidophilus 30SC]
          Length = 654

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 276/626 (44%), Positives = 403/626 (64%), Gaps = 19/626 (3%)

Query: 1   MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48
           M+D  + +             Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E+
Sbjct: 1   MADKSKENLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN+IDE L G+A  I VT+N DGS TV D+GRGIP D+ ++ G  A E + T LHAGGK
Sbjct: 60  IDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167
           F    YKVSGGLHGVG SVVNALS+ L + + R+G  Y + F +G + + +   G+   +
Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLS 179

Query: 168 DTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + GT V F P  DIF+      D  L++R+REL+FLN  + ++  DKR          ++
Sbjct: 180 EHGTIVHFYPDPDIFTETTVFDDKILKNRIRELAFLNKGLTLTFTDKRKDSAETDVYKFE 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+ +V++L+++++ L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG
Sbjct: 240 GGIKEYVAFLNKNQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H +G ++ALTR +  Y  K+   K    ++ G+D REG T+V+S+K P+P+F  QTK K
Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTK 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+ R+ V+   ++  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+
Sbjct: 360 LGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D
Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M 
Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585
            +I  G++YI +PPLY + +GK ++Y+  +E L DYL +   S + +       G +   
Sbjct: 539 PMIDKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPVVQRYKGLGEMDPE 598

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611
            L          ++ +    P + K 
Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 121/368 (32%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            P+    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 347 HPNPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +        +     L D +       K + 
Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPV- 585

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRR FI++N
Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRSFIEKN 645

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 646 AKYVENLD 653


>gi|302552701|ref|ZP_07305043.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302470319|gb|EFL33412.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 690

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 290/653 (44%), Positives = 399/653 (61%), Gaps = 24/653 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++    +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+A
Sbjct: 29  AEASATASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHA 87

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLH
Sbjct: 88  DTIDVTILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 147

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS + + +K +G  +   +  G+   PL     A  +TGT VTF    DI
Sbjct: 148 GVGVSVVNALSSKVSVEVKTDGYRWTQEYKMGVPTAPLAK-HEATEETGTSVTFWADGDI 206

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFY 225
           F   D++++TL  R +E++FLN  + I L D+R                  E + +T  Y
Sbjct: 207 FETTDYSFETLSRRFQEMAFLNKGLTIKLTDERESAKAVTGADEAGADEKAEVKAVTYHY 266

Query: 226 KGGIEAFVSY-LDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQ 282
           +GGI  FV Y   R  + +  + I ++      ++S+++AM+WN GY E V  F N I  
Sbjct: 267 EGGIVDFVKYLNSRKGEAVHPTVIDLEAEDRDKHLSLEIAMQWNGGYTEGVYSFANIIHT 326

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  Q
Sbjct: 327 HEGGTHEEGFRAALTSLINKYARDKRLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQ 386

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++E ++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRK
Sbjct: 387 TKTKLGNTEAKTFVQKVVYEHLADWLDRNPNEAVDIIRKGIQAATARVAARKARDLTRRK 446

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+
Sbjct: 447 GLLETASLPGKLSDCQSNDPDKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEK 506

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF F
Sbjct: 507 ARIDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLF 565

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           R M  L+  G +Y+ +PPLY I  GK        +   D LI    +    +  DS    
Sbjct: 566 RFMRPLVEAGHVYLSRPPLYKIKWGKDDFEYAYSDRERDALIEMGRNAGKRIKDDSVQRF 625

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
               L     + L+I  + ++       T  + A    +F+    +++    A
Sbjct: 626 KG--LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 676



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR      K  S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 604 DALIEMGRNAGKRIKDDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 663

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 664 SVLMGEDVEARRAFIQRNAKDVRFLDI 690


>gi|326406524|gb|ADZ63595.1| topoisomerase IV subunit B [Lactococcus lactis subsp. lactis CV56]
          Length = 644

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 268/595 (45%), Positives = 379/595 (63%), Gaps = 16/595 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YD  +IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ + I+VT
Sbjct: 6   NNYDDSAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRISVT 64

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS +V D GRG+P   H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 65  INADGSLSVEDEGRGMPVGKHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VNALS+WL++ I R+G +Y   F N G     LV  G A    TGT+VTF+P S IFS  
Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLVKIGKAPKSKTGTKVTFMPDSSIFSTT 183

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ +  RL E +FL   V ISL DKR+ E       Y+ G++ FVSYL+  K  L  
Sbjct: 184 EFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVSYLNEDKDSLTP 241

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +G +D   +++A+++NDGY EN+L F NN+  KDGGTH +GL++A+T+ +  Y  
Sbjct: 242 VL-YFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K    K+  +++ G D REG T+VLS+ +P+   +F  QTK+KL S   R VV+S V++ 
Sbjct: 301 KVNLLKEKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           LS +L E+   A+ +++K + A   R+AAR+AR+     +K   D   L GKL     ++
Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +
Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPL
Sbjct: 481 GAGVGAD-FTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPL 539

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           Y ++    + + ++Y   +  L +       +  ++ +     + +       +D
Sbjct: 540 YKMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMD 594



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             +KI+       L  +     K  ++QRYKGLGEMNA QLWETT++P+TR+L++V I D
Sbjct: 548 KKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTLIQVTIDD 607

Query: 770 ASQADDLFSRLMGDEVEPRREFIQEN 795
           A+QA+   S LMGD+VEPRR++I+ N
Sbjct: 608 AAQAEKRVSVLMGDKVEPRRKWIENN 633


>gi|90961848|ref|YP_535764.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius UCC118]
 gi|90821042|gb|ABD99681.1| Topoisomerase IV subunit B [Lactobacillus salivarius UCC118]
          Length = 673

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 270/667 (40%), Positives = 391/667 (58%), Gaps = 15/667 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++Y+ DSIQ+LKGL+AV+KRP MYIG TD   GLHH++YE+ DNA+DE+L GY   I
Sbjct: 1   MPKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIFDNAVDEALSGYGKEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D S TV DNGRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 60  NVIIHKDDSITVVDNGRGMPVGMHS-MGIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSS L +   R+G  YE  F+N G     L   G A   +GT+VTF P ++IFS
Sbjct: 119 ASVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFS 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +N++TL  RLRE +FL   V+I+L D+R+    E    Y  GI+ FV YL+  K  L
Sbjct: 179 TTKYNFNTLAERLRESAFLLKGVKITLTDERTDPYTEEEFLYAEGIKEFVEYLNEDKDVL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               +  +G +D I +++A ++NDGY E ++ F NN+  KDGGTH +G+++A T+    Y
Sbjct: 239 GP-VMYFEGKKDGIEVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAAWTKAFNEY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K   +++ G D REG ++V+S+++P+   +F  QTK KL + E R +V+S VN
Sbjct: 298 ARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEARQIVDSVVN 357

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           + L  +L E+   A+ +V+K + A   R+AAR+ARD     +K       L GKL     
Sbjct: 358 EQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQS 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ K++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   ++ ++EI T+I 
Sbjct: 418 KNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIY 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G + F+IN   Y K+IIMTDAD DGAHI+TLLLTFF++ M  +I+ G +YI  P
Sbjct: 478 TIGAGVGAE-FNINDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALP 536

Query: 540 PLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PLY I +       ++Y   +  LE           ++ +     + +       ++   
Sbjct: 537 PLYKIEKTVKKKRVIKYAWTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPET 596

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           +    ++       +  +   +   V       E NV     L    + +     +  HG
Sbjct: 597 RTLVRVRIDDDTIAEKRVTTLMGDKVEPRRKWIEKNVKFT--LEEDGSLLDTVVAEGAHG 654

Query: 656 SINNSDI 662
            I++  +
Sbjct: 655 EISDDKL 661



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++                      S  +          ++   ++     
Sbjct: 375 VRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQSKNAKRNELFLVEGDSAG 434

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N +  +  ++    ++   +  I       ++ +  N 
Sbjct: 435 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIYTIGAGVGAEFNINDANY 494

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIKITG 718
           D ++           +      F +      I + R+      +  +       ++    
Sbjct: 495 DKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKIEKTVKKKRVIKYA 554

Query: 719 PCSL-LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L++     +KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV+I D + A+   
Sbjct: 555 WTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPETRTLVRVRIDDDTIAEKRV 614

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 615 TTLMGDKVEPRRKWIEKN 632


>gi|21281734|ref|NP_644820.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2]
 gi|87161454|ref|YP_492727.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193828|ref|YP_498613.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151220216|ref|YP_001331039.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161508271|ref|YP_001573930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253733834|ref|ZP_04867999.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451362|ref|ZP_05699393.1| DNA gyrase, B subunit [Staphylococcus aureus A5948]
 gi|262049437|ref|ZP_06022309.1| DNA gyrase subunit B [Staphylococcus aureus D30]
 gi|262051893|ref|ZP_06024108.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3]
 gi|282902636|ref|ZP_06310529.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160]
 gi|282918073|ref|ZP_06325823.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282920724|ref|ZP_06328443.1| DNA gyrase, B subunit [Staphylococcus aureus A9765]
 gi|282921295|ref|ZP_06329013.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427]
 gi|283767795|ref|ZP_06340710.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19]
 gi|297209447|ref|ZP_06925845.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911471|ref|ZP_07128920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|59797750|sp|Q6GD85|GYRB_STAAS RecName: Full=DNA gyrase subunit B
 gi|59799585|sp|P0A0K7|GYRB_STAAW RecName: Full=DNA gyrase subunit B
 gi|59799586|sp|P0A0K8|GYRB_STAAU RecName: Full=DNA gyrase subunit B
 gi|93204588|sp|Q2FKQ1|GYRB_STAA3 RecName: Full=DNA gyrase subunit B
 gi|296395|emb|CAA50570.1| DNA gyrase [Staphylococcus aureus]
 gi|540541|dbj|BAA01369.1| DNA gyrase B [Staphylococcus aureus]
 gi|21203169|dbj|BAB93870.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2]
 gi|87127428|gb|ABD21942.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201386|gb|ABD29196.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150373016|dbj|BAF66276.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160367080|gb|ABX28051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253728137|gb|EES96866.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130]
 gi|257860892|gb|EEV83709.1| DNA gyrase, B subunit [Staphylococcus aureus A5948]
 gi|259160220|gb|EEW45249.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3]
 gi|259162434|gb|EEW47004.1| DNA gyrase subunit B [Staphylococcus aureus D30]
 gi|282315710|gb|EFB46094.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427]
 gi|282318358|gb|EFB48718.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282594132|gb|EFB99120.1| DNA gyrase, B subunit [Staphylococcus aureus A9765]
 gi|282597095|gb|EFC02054.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160]
 gi|283461674|gb|EFC08758.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19]
 gi|296885908|gb|EFH24843.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|298693327|gb|ADI96549.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED133]
 gi|300887650|gb|EFK82846.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|315197923|gb|EFU28256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320141422|gb|EFW33265.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144405|gb|EFW36170.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323443267|gb|EGB00884.1| DNA gyrase subunit B [Staphylococcus aureus O46]
 gi|329731718|gb|EGG68078.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21189]
          Length = 644

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|15672961|ref|NP_267135.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723922|gb|AAK05077.1|AE006332_6 topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 644

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 268/595 (45%), Positives = 378/595 (63%), Gaps = 16/595 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YD  +IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ + I+VT
Sbjct: 6   NNYDDSAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRISVT 64

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS +V D GRG+P   H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 65  INADGSLSVEDEGRGMPVGKHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VNALS+WL++ I R+G +Y   F N G     LV  G A    TGT+VTF+P S IFS  
Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLVKIGKAPKSKTGTKVTFMPDSSIFSTT 183

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ +  RL E +FL   V ISL DKR+ E       Y+ G++ FVSYL+  K  L  
Sbjct: 184 EFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVSYLNEDKDSLTP 241

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +G +D   +++A+++NDGY EN+L F NN+  KDGGTH +GL++A+T+ +  Y  
Sbjct: 242 VL-YFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K    K+  +++ G D REG T VLS+ +P+   +F  QTK+KL S   R VV+S V++ 
Sbjct: 301 KVNLLKEKDKNLEGSDYREGLTVVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           LS +L E+   A+ +++K + A   R+AAR+AR+     +K   D   L GKL     ++
Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +
Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPL
Sbjct: 481 GAGVGAD-FTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPL 539

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           Y ++    + + ++Y   +  L +       +  ++ +     + +       +D
Sbjct: 540 YKMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMD 594



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             +KI+       L  +     K  ++QRYKGLGEMNA QLWETT++P+TR+L++V I D
Sbjct: 548 KKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTLIQVTIDD 607

Query: 770 ASQADDLFSRLMGDEVEPRREFIQEN 795
           A+QA+   S LMGD+VEPRR++I+ N
Sbjct: 608 AAQAEKRVSVLMGDKVEPRRKWIENN 633


>gi|221141520|ref|ZP_03566013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|257424201|ref|ZP_05600630.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426878|ref|ZP_05603280.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429514|ref|ZP_05605901.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432161|ref|ZP_05608524.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435122|ref|ZP_05611173.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876]
 gi|258423233|ref|ZP_05686125.1| DNA gyrase subunit B [Staphylococcus aureus A9635]
 gi|282907052|ref|ZP_06314900.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910031|ref|ZP_06317839.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912279|ref|ZP_06320075.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912919|ref|ZP_06320711.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282922547|ref|ZP_06330237.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101]
 gi|283959489|ref|ZP_06376930.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293511562|ref|ZP_06670256.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809]
 gi|293550171|ref|ZP_06672843.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|295429302|ref|ZP_06821924.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589196|ref|ZP_06947837.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus MN8]
 gi|304379953|ref|ZP_07362682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|59797755|sp|Q6GKU0|GYRB_STAAR RecName: Full=DNA gyrase subunit B
 gi|257273219|gb|EEV05321.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276509|gb|EEV07960.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279995|gb|EEV10582.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283040|gb|EEV13172.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285718|gb|EEV15834.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876]
 gi|257846562|gb|EEV70584.1| DNA gyrase subunit B [Staphylococcus aureus A9635]
 gi|269939531|emb|CBI47889.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TW20]
 gi|282314768|gb|EFB45154.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101]
 gi|282323019|gb|EFB53338.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282323975|gb|EFB54291.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326097|gb|EFB56402.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329951|gb|EFB59472.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283789081|gb|EFC27908.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919218|gb|EFD96294.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|291465520|gb|EFF08052.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809]
 gi|295127061|gb|EFG56705.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297577707|gb|EFH96420.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus MN8]
 gi|302749916|gb|ADL64093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304341533|gb|EFM07443.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312436854|gb|ADQ75925.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195231|gb|EFU25619.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus CGS00]
 gi|329312728|gb|AEB87141.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus T0131]
          Length = 644

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 290/591 (49%), Positives = 396/591 (67%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K+DK  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|49484917|ref|YP_042138.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49243360|emb|CAG41777.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 643

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 5   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 63

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 64  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 123

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 124 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 182

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 183 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 242

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 243 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 302

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 303 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 362

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 363 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 422

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 423 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 482

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 483 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 541

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 542 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 592



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 510 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 567

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 568 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 624

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 625 VENRRQFIEDNAVYANLD 642


>gi|227506183|ref|ZP_03936232.1| DNA gyrase subunit B [Corynebacterium striatum ATCC 6940]
 gi|227197207|gb|EEI77255.1| DNA gyrase subunit B [Corynebacterium striatum ATCC 6940]
          Length = 684

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 270/690 (39%), Positives = 389/690 (56%), Gaps = 53/690 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +YDA SI IL+GL+AV+KRP MYIG T G  GLHH+I+EV+DN++DE++ GY
Sbjct: 1   MAE---EHAYDAGSITILEGLEAVRKRPGMYIGST-GVRGLHHLIWEVVDNSVDEAMAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L  DG   V D+GRGIP ++H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 57  ATKVVVKLLADGGVEVIDDGRGIPVEMHA-TGAPTVQVVMTQLHAGGKFDSDSYAVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IKR+G  +  +F N I D  +   G     TGT + F    +
Sbjct: 116 HGVGISVVNALSTRVEAEIKRDGKHWYQNFSNAIPDELVE--GGNARGTGTTIRFWADPE 173

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221
           IF   +++Y T+  RL+E++FLN  + I LID+R  + +                     
Sbjct: 174 IFETTEYDYQTIARRLQEMAFLNKGLTIELIDERVTKEQLELEAIADAESGETALEAESF 233

Query: 222 -------------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
                                       Y  G+  +V +L++ K  +  + +      ++
Sbjct: 234 DDIDVDAEADGPSEEKPAKKLQKKVVYHYPDGLIDYVKHLNKTKTSIHPTIVAFDVKGED 293

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             +++A++WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   +
Sbjct: 294 HEVEVALQWNQGYKESVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLIKEKDGN 353

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           + G+DCREG ++V+S+K+ DP+F  QTK KL +SE++  V+  VN+ ++ W + +P EAK
Sbjct: 354 LSGEDCREGLSAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDANPAEAK 413

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
            I+ K + ++  R AAR+AR++ RRK   D+  LPGKLADC  +DPK SEL++VEGDSAG
Sbjct: 414 AIINKAVSSAHARVAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVEGDSAG 473

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI ++ FDI KLR
Sbjct: 474 GSAKAGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEE-FDIEKLR 532

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKD 555
           Y+KI++M DADVDG HI TLLLT  FR MP L+ +G +Y+  PPLY +  GK    Y   
Sbjct: 533 YNKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVYLANPPLYKLKWGKGEPGYAFS 592

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           ++  +  L     +       D           N  +                D    ++
Sbjct: 593 DDERDKLLAEGLENNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRILRRVDLEDAQR 652

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFI 645
           A          D     S  ++ A  + F+
Sbjct: 653 ADELFSILMGDDVSARRSFITRRAKDVRFL 682



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 102/243 (41%), Gaps = 24/243 (9%)

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
            +SE   +  DS G  +K    +     L +   I +         ++ A +  +     
Sbjct: 460 KISELYIVEGDSAGGSAKAGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALG 519

Query: 627 DQEINVSLASKLA-NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
                     KL  N++  +A+      H +     +L + + + V++  V         
Sbjct: 520 TGIHEEFDIEKLRYNKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHV---YLANPP 576

Query: 686 GSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKG 741
             K        ++           + ++ K      LL       RK I+    +QRYKG
Sbjct: 577 LYK--------LKWGKGEPGYAFSDDERDK------LLAEGLENNRK-INKDDGIQRYKG 621

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA- 800
           LGEMNAS+LWETTL+P TR L RV + DA +AD+LFS LMGD+V  RR FI   +     
Sbjct: 622 LGEMNASELWETTLDPSTRILRRVDLEDAQRADELFSILMGDDVSARRSFITRRAKDVRF 681

Query: 801 LDI 803
           LD+
Sbjct: 682 LDV 684


>gi|49482258|ref|YP_039482.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49240387|emb|CAG39033.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 643

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 290/591 (49%), Positives = 396/591 (67%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 5   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 63

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 64  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 123

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 124 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 182

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 183 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 242

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 243 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 302

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K+DK  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 303 LNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 362

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 363 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 422

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 423 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 482

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 483 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 541

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 542 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 592



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 510 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 567

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 568 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 624

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 625 VENRRQFIEDNAVYANLD 642


>gi|301300621|ref|ZP_07206811.1| DNA topoisomerase IV, B subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851775|gb|EFK79469.1| DNA topoisomerase IV, B subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 673

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 261/597 (43%), Positives = 371/597 (62%), Gaps = 13/597 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++Y+ DSIQ+LKGL+AV+KRP MYIG TD   GLHH++YE+ DNA+DE+L GY   I
Sbjct: 1   MPKNNYNDDSIQVLKGLEAVRKRPGMYIGSTD-TRGLHHLVYEIFDNAVDEALSGYGKEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V ++ D S TV DNGRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 60  NVIIHKDDSITVVDNGRGMPVGMHS-MGIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSS L +   R+G  YE  F+N G     L   G A   +GT+VTF P ++IFS
Sbjct: 119 ASVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFS 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +N++TL  RLRE +FL   V+I+L D+R+    E    Y  GI+ FV YL+  K  L
Sbjct: 179 TTKYNFNTLAERLRESAFLLKGVKITLTDERTDPYTEEEFLYAEGIKEFVEYLNEDKDVL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               +  +G +D I +++A ++NDGY E ++ F NN+  KDGGTH +G+++A T+    Y
Sbjct: 239 GP-VMYFEGKKDGIEVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAAWTKAFNEY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K   +++ G D REG ++V+S+++P+   +F  QTK KL + E R +V+S VN
Sbjct: 298 ARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEARQIVDSVVN 357

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           + L  +L E+   A+ +V+K + A   R+AAR+ARD     +K       L GKL     
Sbjct: 358 EQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQS 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ K++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   ++ ++EI T+I 
Sbjct: 418 KNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIY 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G + F+I+   Y K+IIMTDAD DGAHI+TLLLTFF++ M  +I+ G +YI  P
Sbjct: 478 TIGAGVGAE-FNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALP 536

Query: 540 PLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PLY I +       ++Y   +  LE           ++ +     + +       ++
Sbjct: 537 PLYKIEKTVKKKRVIKYAWTDAELESVTKELKKGYTLQRYKGLGEMNADQLWETTMN 593



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++                      S  +          ++   ++     
Sbjct: 375 VRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQSKNAKRNELFLVEGDSAG 434

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N +  +  ++    ++   +  I       ++    N 
Sbjct: 435 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIYTIGAGVGAEFNIDDANY 494

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIKITG 718
           D ++           +      F +      I + R+      +  +       ++    
Sbjct: 495 DKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKIEKTVKKKRVIKYA 554

Query: 719 PCSL-LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+++    +KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RVKI D + A+   
Sbjct: 555 WTDAELESVTKELKKGYTLQRYKGLGEMNADQLWETTMNPETRTLVRVKIDDDTIAEKRV 614

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 615 TTLMGDKVEPRRKWIEKN 632


>gi|315613333|ref|ZP_07888242.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           ATCC 49296]
 gi|315314568|gb|EFU62611.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           ATCC 49296]
          Length = 649

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/623 (43%), Positives = 393/623 (63%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGERIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+ A + TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLEKVGTAAKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTIDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R +
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPI 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F +    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|293380895|ref|ZP_06626931.1| DNA gyrase, B subunit [Lactobacillus crispatus 214-1]
 gi|290922568|gb|EFD99534.1| DNA gyrase, B subunit [Lactobacillus crispatus 214-1]
          Length = 654

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 401/626 (64%), Gaps = 19/626 (3%)

Query: 1   MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48
           M+DN + +             Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E+
Sbjct: 1   MADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN+IDE L G+A  I VT+N DGS TV D+GRGIP D+ ++ G  A E + T LHAGGK
Sbjct: 60  IDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167
           F    YKVSGGLHGVG SVVNALS+ L + + R+G  Y + F +G + + +   G+   +
Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLD 179

Query: 168 DTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + GT V F P  DIF+      D  L++R+REL+FLN  + ++  DKR          ++
Sbjct: 180 EHGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRKDTAETDVYKFE 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+ +V++L++ ++ L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG
Sbjct: 240 GGIKEYVAFLNKGQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H +G ++ALTR +  Y  KS   K    ++ G+D REG T+++S+K P P+F  QTK K
Sbjct: 300 MHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQFEGQTKTK 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+ R+ V+   ++  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+
Sbjct: 360 LGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D
Sbjct: 420 IANLPGKLADNASNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M 
Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585
            +I  G++YI KPPLY + +GK ++Y+  +E L DYL +   S +         G +   
Sbjct: 539 PMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMDPE 598

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611
            L          ++ +    P + K 
Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622



 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVK 346

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            PS    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNASNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +        +     L D +       K  +
Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPK-PT 585

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRR+FIQ+N
Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVSPRRDFIQKN 645

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 646 AKYVENLD 653


>gi|194467941|ref|ZP_03073927.1| DNA topoisomerase IV, B subunit [Lactobacillus reuteri 100-23]
 gi|194452794|gb|EDX41692.1| DNA topoisomerase IV, B subunit [Lactobacillus reuteri 100-23]
          Length = 669

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 261/599 (43%), Positives = 370/599 (61%), Gaps = 17/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       YDA SIQ+LKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKEEVK--YDASSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119
            D I VT+  D + TV D+GRG+P  +H   G    EVIMT LHAGGKF Q   YK SGG
Sbjct: 58  GDEINVTIEADNAITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQSDGYKTSGG 116

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSS L L I R+   Y+  F + G     L   G    + GT V+F P 
Sbjct: 117 LHGVGASVVNALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS   ++Y+TL +RLRE +FL   ++I+L DKR+ + ++    +  GI+ FVSYL+ 
Sbjct: 177 PKIFSTTVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFADGIQEFVSYLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             K ++   +   G +D + +++A ++NDGY E++L F NN+   DGGTH +G RSA T+
Sbjct: 237 G-KDVLGKTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y +K    K + +++ G D REG T+V+S+++P+   +F  QTK+KL + E R +V
Sbjct: 296 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414
           ++ V++ L+  L E+   A+++++K L A   R+AAR+AR+  R  ++      +L GKL
Sbjct: 356 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+
Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G G + F++    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +
Sbjct: 476 NTIIYTVGAGAGSE-FNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKI 534

Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           YI  PPLY + R      ++ Y    E L                    G ++ + L  
Sbjct: 535 YIALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMG-KGAQLQRFKGLGEMNADQLWE 592



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++              +  +    S  +          ++   ++     
Sbjct: 378 IRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQSKNAKKNELFLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  +V    +L   +  +   +   ++   +N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFNVEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      I + +I      +  L    G K  IT  
Sbjct: 498 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQRGRGAKTNITYA 557

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QR+KGLGEMNA QLWETT+NP+TR+L++V+I DA  A+   
Sbjct: 558 WTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPETRTLIQVRIEDAELAERRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMG++VEPRRE+I+EN
Sbjct: 618 TTLMGNKVEPRREWIEEN 635


>gi|70704703|gb|AAZ06859.1| DNA gyrase subunit B [Acholeplasma morum]
 gi|70704732|gb|AAZ06860.1| DNA gyrase subunit B [Acholeplasma morum]
          Length = 535

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 264/531 (49%), Positives = 363/531 (68%), Gaps = 4/531 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           GE GLHH+++E++DN+IDES+ GYA  IT+ +  D    V+D+GRGIP D H + G SA 
Sbjct: 1   GERGLHHLVWEIVDNSIDESMVGYASEITLEILPDNIIKVTDDGRGIPVDKHAKTGKSAV 60

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E I+T LHAGGKF+ KSYKVSGGLHGVG SVVNALSSW ++ I R G +Y+  +  GI  
Sbjct: 61  ETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTISRNGLLYQQEYSRGIPQ 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L   G + + TGT + F   S+IF+    F+++TL++R++EL+FLN  ++IS+ D R 
Sbjct: 121 YELKEIGKSSH-TGTTIEFKADSEIFTEAQAFDFETLRNRIQELAFLNRHIKISITDSRG 179

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            EP   T  Y+GGIE +V +L+  K  +    +      DNI++++A+++ND Y  N+  
Sbjct: 180 KEPVSFTYQYEGGIEEYVKFLNHGKSVINPQIVYTFKEVDNITVEIALQYNDSYATNIYS 239

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNI   +GG H  G + AL+R + +Y + +    K   + IG+D REG T+++SIK P
Sbjct: 240 FTNNIHTHEGGMHEDGFKLALSRVLGNYAKDN-SLLKKDEAFIGEDTREGLTAIVSIKHP 298

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL + EVR +V     +GL  +L E+P  AK I+ KV+ AS  R AAR+A
Sbjct: 299 NPQFEGQTKTKLGNPEVRQIVSQAAGEGLERYLLENPAAAKSIIDKVILASRARIAARKA 358

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++ TRRK  LD      KLADC  + P++SE+++VEGDSAGGSAKQGR    QAILPLRG
Sbjct: 359 KEATRRKSPLDALGFASKLADCRNKKPEESEIYIVEGDSAGGSAKQGRDSAFQAILPLRG 418

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNVE+AR DK+LS++EI ++I A GTGIG+D FD +K RYHKI+IMTDADVDGAHIRT
Sbjct: 419 KVLNVEKARLDKILSNKEILSMIQAFGTGIGED-FDASKARYHKIVIMTDADVDGAHIRT 477

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           L+LTF +R M  LI  G++Y+ +PPLY +  GK ++Y+ DEE L   L   
Sbjct: 478 LMLTFLYRYMKPLIDLGYVYVAQPPLYKVQSGKRVEYIYDEERLRAVLEQM 528


>gi|262046286|ref|ZP_06019249.1| DNA gyrase, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|295691867|ref|YP_003600477.1| DNA gyrase, b subunit [Lactobacillus crispatus ST1]
 gi|312977114|ref|ZP_07788863.1| DNA gyrase, B subunit [Lactobacillus crispatus CTV-05]
 gi|260573616|gb|EEX30173.1| DNA gyrase, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|295029973|emb|CBL49452.1| DNA gyrase, B subunit [Lactobacillus crispatus ST1]
 gi|310896442|gb|EFQ45507.1| DNA gyrase, B subunit [Lactobacillus crispatus CTV-05]
          Length = 654

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 401/626 (64%), Gaps = 19/626 (3%)

Query: 1   MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48
           M+DN + +             Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E+
Sbjct: 1   MADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN+IDE L G+A  I VT+N DGS TV D+GRGIP D+ ++ G  A E + T LHAGGK
Sbjct: 60  IDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167
           F    YKVSGGLHGVG SVVNALS+ L + + R+G  Y + F +G + + +   G+   +
Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLD 179

Query: 168 DTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + GT V F P  DIF+      D  L++R+REL+FLN  + ++  DKR          ++
Sbjct: 180 EHGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRKDTAETDVYKFE 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+ +V++L++ ++ L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG
Sbjct: 240 GGIKEYVAFLNKGQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H +G ++ALTR +  Y  KS   K    ++ G+D REG T+++S+K P P+F  QTK K
Sbjct: 300 MHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQFEGQTKTK 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+ R+ V+   ++  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+
Sbjct: 360 LGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D
Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M 
Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585
            +I  G++YI KPPLY + +GK ++Y+  +E L DYL +   S +         G +   
Sbjct: 539 PMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMDPE 598

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611
            L          ++ +    P + K 
Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVK 346

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            PS    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +        +     L D +       K  +
Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPK-PT 585

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRR+FIQ+N
Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVSPRRDFIQKN 645

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 646 AKYVENLD 653


>gi|82749782|ref|YP_415523.1| DNA gyrase subunit B [Staphylococcus aureus RF122]
 gi|82655313|emb|CAI79693.1| DNA gyrase subunit B [Staphylococcus aureus RF122]
          Length = 644

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIG-DDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSKLNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 22/205 (10%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + N    +++  +  + + +  +    +  K           +
Sbjct: 455 LPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGDDFDLAKARYHK-----------I 503

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V      V    +      F +      I +  +      +  L     K  +      L
Sbjct: 504 VIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-L 562

Query: 724 DTIFSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +    +  +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F
Sbjct: 563 DKL----KSKLNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTF 618

Query: 778 SRLMGDEVEPRREFIQENSLPSALD 802
             LMGD VE RR+FI++N++ + LD
Sbjct: 619 EMLMGDVVENRRQFIEDNAVYANLD 643


>gi|315037235|ref|YP_004030803.1| DNA gyrase, B subunit [Lactobacillus amylovorus GRL 1112]
 gi|312275368|gb|ADQ58008.1| DNA gyrase, B subunit [Lactobacillus amylovorus GRL 1112]
 gi|327182554|gb|AEA31001.1| DNA gyrase subunit B [Lactobacillus amylovorus GRL 1118]
          Length = 654

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 276/626 (44%), Positives = 402/626 (64%), Gaps = 19/626 (3%)

Query: 1   MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48
           M+D  + +             Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E+
Sbjct: 1   MADKSKENLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN+IDE L G+A  I VT+N DGS TV D+GRGIP D+ ++ G  A E + T LHAGGK
Sbjct: 60  IDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167
           F    YKVSGGLHGVG SVVNALS+ L + + R+G  Y + F +G + + +   G+   +
Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLS 179

Query: 168 DTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + GT V F P  DIF+      D  L++R+REL+FLN  + ++  DKR          ++
Sbjct: 180 EHGTIVHFYPDPDIFTETTVFDDKILKNRIRELAFLNKGLTLTFTDKRKDSAETDVYKFE 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+ +V++L++ ++ L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG
Sbjct: 240 GGIKEYVAFLNKDQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H +G ++ALTR +  Y  K+   K    ++ G+D REG T+V+S+K P+P+F  QTK K
Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTK 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+ R+ V+   ++  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+
Sbjct: 360 LGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D
Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M 
Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585
            +I  G++YI +PPLY + +GK ++Y+  +E L DYL +   S + +       G +   
Sbjct: 539 PMIDKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPVVQRYKGLGEMDPE 598

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611
            L          ++ +    P + K 
Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622



 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 121/368 (32%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            P+    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 347 HPNPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +        +     L D +       K + 
Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPV- 585

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRR FI++N
Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRSFIEKN 645

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 646 AKYVENLD 653


>gi|170016363|ref|YP_001727282.1| DNA gyrase, B subunit [Leuconostoc citreum KM20]
 gi|169803220|gb|ACA81838.1| DNA gyrase, B subunit [Leuconostoc citreum KM20]
          Length = 669

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 277/572 (48%), Positives = 388/572 (67%), Gaps = 6/572 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y+AD IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A
Sbjct: 27  TVTANAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 85

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             ITVT+  D S TV+D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLH
Sbjct: 86  SHITVTIEADNSITVTDDGRGIPVDIQTKTGKPALETVFTVLHAGGKFGGGGYKVSGGLH 145

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSD 180
           GVG SVVNALS+ L +++ R+G +Y M F  G ++  +V          GT V F P +D
Sbjct: 146 GVGASVVNALSTNLDVKVVRDGQVYYMDFKVGRVNTRMVKLDEKPTIARGTIVHFKPDAD 205

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FNY+TL  R+REL+FLN  ++IS+ D R+  P   +  Y+GGI+ +V YL+  
Sbjct: 206 IFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRAETPMTESFHYEGGIKEYVKYLNAE 265

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +   P+ ++G  + I ++ A+++     +++  FTNNI   +GGTH +G ++ALTR 
Sbjct: 266 KVVVFPEPVYVEGEENGIVVEAALQYTTDVKDSLRTFTNNINTYEGGTHETGFKTALTRV 325

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K++  S+ G+D REG T+++SIK PDP+F  QTK KL +S+ R   +  
Sbjct: 326 INDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 385

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++  S ++ E+P  AK IV+K + A   R AA+RAR++TR++  L+I +LPGKLAD + 
Sbjct: 386 FSETFSRFMMENPAVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 445

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNVE+A  DK+L+++EI +L T
Sbjct: 446 NDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVEKATLDKVLANEEIRSLFT 505

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTG G D F++ K  YHK+IIMTDADVDGAHIRTLLLT F+R M  L+ +G++YI +P
Sbjct: 506 AMGTGFG-DDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVDSGYIYIAQP 564

Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLS 569
           PLYG+     K+ +Y+  +E LEDYL     +
Sbjct: 565 PLYGVALGNSKNREYLDSDEELEDYLAQLPAN 596



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QL +TT++P  R LLRV   DA  AD +F  LMGD+V PRREFI+EN
Sbjct: 601 VQRYKGLGEMDFDQLADTTMDPLNRRLLRVDPADAEAADSIFDMLMGDDVAPRREFIEEN 660

Query: 796 SLPS-ALDI 803
           ++    LDI
Sbjct: 661 AVFVENLDI 669


>gi|296110748|ref|YP_003621129.1| DNA gyrase, B subunit [Leuconostoc kimchii IMSNU 11154]
 gi|295832279|gb|ADG40160.1| DNA gyrase, B subunit [Leuconostoc kimchii IMSNU 11154]
          Length = 669

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 277/572 (48%), Positives = 387/572 (67%), Gaps = 6/572 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +   Q   Y+AD IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A
Sbjct: 27  TVEAQAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 85

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             ITVT+  D S TV+D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLH
Sbjct: 86  SHITVTIEKDNSITVTDDGRGIPVDIQTKTGKPALETVFTVLHAGGKFGGGGYKVSGGLH 145

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSD 180
           GVG SVVNALS+ L +++ R+G +Y M F  G ++  +V        D GT V F P +D
Sbjct: 146 GVGASVVNALSTNLDVKVVRDGQVYYMDFKIGRVNTRMVKLDEKPTIDRGTIVHFNPDAD 205

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FNY+TL  R+REL+FLN  ++IS+ D R   P   +  ++GGI+ +V YL+  
Sbjct: 206 IFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRLETPVVESFHFEGGIKEYVEYLNAE 265

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +   P+ ++G  + I ++ A+++     +++  FTNNI   +GGTH +G ++ALTR 
Sbjct: 266 KTVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFTNNINTYEGGTHETGFKTALTRV 325

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K +  S+ G+D REG T+++SIK PDP+F  QTK KL +S+ R   +  
Sbjct: 326 INDYARKNGQLKDNAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 385

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++  S ++ E+P+ AK IV+K + A   R AA+RAR++TR++  L+I +LPGKLAD + 
Sbjct: 386 FSETFSRFMMENPVVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 445

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNVE+A  DK+L+++EI +L T
Sbjct: 446 NDPALSELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVEKATLDKVLANEEIRSLFT 505

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTG G D F++ K  YHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G++YI +P
Sbjct: 506 AMGTGFG-DDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAGYIYIAQP 564

Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLS 569
           PLYG+     K+ +Y+  +E LE YL     +
Sbjct: 565 PLYGVALGNSKTREYLDTDEELETYLAQLPSN 596



 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QL +TT++P  R LLRV  TDA  AD +F  LMGD+V PRREFI+EN
Sbjct: 601 VQRYKGLGEMDFDQLADTTMDPLNRRLLRVDPTDAEAADSIFDMLMGDDVAPRREFIEEN 660

Query: 796 SLPS-ALDI 803
           ++    LDI
Sbjct: 661 AVFVENLDI 669


>gi|197294338|ref|YP_001798879.1| DNA gyrase beta subunit [Candidatus Phytoplasma australiense]
 gi|171853665|emb|CAM11548.1| DNA gyrase beta subunit [Candidatus Phytoplasma australiense]
          Length = 662

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 249/605 (41%), Positives = 377/605 (62%), Gaps = 28/605 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+ADSIQIL+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L G+A+ IT+ 
Sbjct: 2   KNYNADSIQILEGLEAVRKRPGMYIGST-AAKGLHHLVWEIVDNSIDEALAGHANEITLE 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +      +V+DNGRGIP  +H + G  A E I+T LHAGGKF+  SYK+SGGLHGVG SV
Sbjct: 61  ILPGDIISVTDNGRGIPVGIHHKTGKPAVETILTTLHAGGKFDSSSYKISGGLHGVGASV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QD 186
           VNALSSW  + I  +  I+   +  G+   PL V G   +  GT + FL    IF     
Sbjct: 121 VNALSSWFSVEIHLDKKIHYQKYEKGVPVAPLEVIGKT-DRKGTVIKFLADPSIFQETTI 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQ 245
           ++   L+ R+++LSFLN  ++++LID+R  +P     +++ G++ ++++    + +    
Sbjct: 180 YDAKILKERIQQLSFLNKGLKLNLIDQRQEKPVSFNFYHEKGLQDYLTFINQTYMQKPFH 239

Query: 246 SPIRIQGSRDNISIDLAM----------------RWNDGYHEN--VLCFTNNIPQKDGGT 287
           +   ++   DN+++++                  +    Y +   +  F NNI   +GGT
Sbjct: 240 NLFVLEKELDNLALEIVFEYTVNDDEKSKQQEEEQAIKNYTQTQKIYSFVNNIHTHEGGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G + AL+R  + Y +     KK++  +  +D  EG T+++S+K  DP+F  QTK KL
Sbjct: 300 HEEGFKLALSRNFSKYAKDYNLLKKNESLLS-EDILEGITAIISLKHQDPQFEGQTKAKL 358

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            + EVR +V  +  + L  +L E+P +AK I++K L ++  R AA+RAR++ R K  LD 
Sbjct: 359 GNVEVRQIVSQYFGEALGRFLLENPGDAKKIIEKCLLSANARLAAKRAREIVRNK-PLDT 417

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                KLADC  +DPK SEL++VEGDSAGGSAKQGR    QAILPL+GK+LNVE+ +  K
Sbjct: 418 LGFAAKLADCRSKDPKISELYIVEGDSAGGSAKQGRDSHFQAILPLKGKVLNVEKTQSSK 477

Query: 468 MLSSQEIGTLITALGTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           +L+++EI +LI A+G G+    Q + +++KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 
Sbjct: 478 ILTNKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRN 537

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           +  LI  G++Y  +PPLY   +GK++ Y  +E+   D+ + +++ +         G ++ 
Sbjct: 538 LRILIEKGYIYFARPPLYKYQKGKNITYFYEEKEKIDFSLKKNIKDG-FQRYKGLGEMNP 596

Query: 585 NDLRN 589
           + L  
Sbjct: 597 DQLWE 601



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 17/198 (8%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIA----RGVQEQFV 676
           V N E  Q   +    ++ + +  I    + +   ++N   +   +I       V    +
Sbjct: 467 VLNVEKTQSSKILTNKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHI 526

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT-IFSIGRKGIS 735
                 F F +    I    I      +       +          +D  +    + G  
Sbjct: 527 RTLLLTFFFRNLRILIEKGYIYFARPPLYKYQKGKNITYFYEEKEKIDFSLKKNIKDGF- 585

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA----------SQADDLFSRLMGDEV 785
            QRYKGLGEMN  QLWETT+NP+ R+LL+  + DA           +A+  F+ LMG EV
Sbjct: 586 -QRYKGLGEMNPDQLWETTMNPEKRTLLQASLKDALNALSDEEAIKEANSTFNILMGKEV 644

Query: 786 EPRREFIQENSLPSALDI 803
            PR+EFI  N+L + LD+
Sbjct: 645 FPRKEFILNNALEADLDV 662


>gi|283469234|emb|CAQ48445.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ST398]
          Length = 644

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 290/591 (49%), Positives = 396/591 (67%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    DI
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGDI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|329117688|ref|ZP_08246405.1| DNA topoisomerase IV, B subunit [Streptococcus parauberis NCFD
           2020]
 gi|326908093|gb|EGE55007.1| DNA topoisomerase IV, B subunit [Streptococcus parauberis NCFD
           2020]
          Length = 651

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 271/649 (41%), Positives = 395/649 (60%), Gaps = 17/649 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+      ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MAKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I VT+N DGS +V D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNAIKVTINKDGSVSVEDSGRGMPTGKHA-MGIPTVQVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G +Y   F N G   + L   G+A    TGT VTF+P
Sbjct: 119 LHGVGSSVVNALSAWLQVDITRDGVVYRQRFENGGKPVSTLKKIGTAPKSKTGTTVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V+++L D R  EP      Y+ G++ FV YL+
Sbjct: 179 DETIFSSIDFKFNTIAERLKESAFLLKDVKMTLTDLRGDEPVVEEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I I+G      + +A+++NDG+ +N+L F NN+  KDGG+H +GL++A+T
Sbjct: 239 EDKETLTP-VIYIEGQDQEFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKAAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R V
Sbjct: 298 KVMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V+D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDGIVSDKLTYFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I  + Y K+IIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMIHTIGAGVGAD-FSIEDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PP Y ++    + + + Y   +  L+D          ++ +     + +      
Sbjct: 537 VYIALPPFYKMSKGKGKSEKIAYAWTDGELDDLRKEFGKGAMLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
            +D   +  I   I D      +  +     +       +  +  +L  
Sbjct: 597 TMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 10/260 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +     N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIHTIGAGVGADFSIEDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-----CNGDKIK 715
           D ++           +   + + +F  +Y R                         +KI 
Sbjct: 501 DKVIIMTDADTDGAHI--QTLLLTFFYRYMRPLVEEGHVYIALPPFYKMSKGKGKSEKIA 558

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                  LD +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ 
Sbjct: 559 YAWTDGELDDLRKEFGKGAMLQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAER 618

Query: 776 LFSRLMGDEVEPRREFIQEN 795
             S LMGD+  PRR++I++N
Sbjct: 619 RVSVLMGDKAAPRRQWIEDN 638


>gi|331703026|ref|YP_004399713.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801581|emb|CBW53734.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 634

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/565 (43%), Positives = 363/565 (64%), Gaps = 7/565 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A+SI++LKGL+AV+ RP MYIG T   +GLHH+++E+LDN+IDE++ GYAD+I V
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  +    V DNGRGIP  ++ +   SA  ++ T+LHAGGKF+ +SYK+SGGLHGVG S
Sbjct: 61  TITKENEVIVQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS ++++ + R    Y   F  G    + L   G   +  GT+V F P  +IF   
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSKGGTKESELQQLGHT-DLRGTKVKFKPDPEIFKET 179

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y+ +++++++L+FLN  ++I+L D+R  +  E       GI  ++   +  K  + 
Sbjct: 180 VVFDYEIIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +   +    ++I +++A+++N  Y EN++ F NNI   +GGTH  GL+ AL R I  Y 
Sbjct: 238 PNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINRYA 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +    + K       DD +EG   +LS++  DP++  QTK KL + + +  V   + +  
Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L + P +AK I+ K ++A   R AA++AR+ TRRK  LD  SLPGKLADC  +D   
Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADCETKDSSI 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER    +  S+ EI ++ITA+GTG
Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAVGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I ++  D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M  L+ NG +YI +PPLY I
Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569
             GK + Y   +  L++   N+  +
Sbjct: 537 EAGKKIAYAYTDSQLDELKNNEFNN 561



 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 4/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E      +++ + +  +    ++    S      +V      V    +    
Sbjct: 450 VLNVERVTEARAFSNNEIKSIITAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738
             F +      + +  I       L  I  G KI      S LD + +     +  ++QR
Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDSQLDELKNNEFNNLKYTIQR 568

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P  R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+  
Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628

Query: 799 S-ALD 802
              +D
Sbjct: 629 VENID 633


>gi|306834803|ref|ZP_07467867.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           accolens ATCC 49726]
 gi|304569331|gb|EFM44832.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           accolens ATCC 49726]
          Length = 689

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 276/695 (39%), Positives = 391/695 (56%), Gaps = 58/695 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++     +YDA SI IL+GL+AV+KRP MYIG T G  GLHH+I+E++DN++DE++ G+
Sbjct: 1   MAE---EHAYDAGSITILEGLEAVRKRPGMYIGST-GSRGLHHLIWEIVDNSVDEAMAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD +TV L  DG   V DNGRGIP ++H   G    +V+MT+LHAGGKF+  SY VSGGL
Sbjct: 57  ADKVTVKLLEDGGVEVIDNGRGIPVEMHAS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++  IKREG  +  +F N I D  L V G     TGT++ F    +
Sbjct: 116 HGVGISVVNALSTRVEAEIKREGKHWYQNFQNAIPD-DL-VEGGNARGTGTKIRFWADPE 173

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221
           IF   +F+YDT+  RL+E++FLN  + I LID+R  E +                     
Sbjct: 174 IFETTEFDYDTIARRLQEMAFLNKGLTIELIDERVTEEQIELEEIADAESGEASADETSF 233

Query: 222 ------------------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
                                         T  Y  G+  +V +L++ K  +  + +  +
Sbjct: 234 DDVPDAGDTFNEEADSKNVTKADKKRRKKITFHYPEGLTDYVKFLNKSKSAIHPTIVSFE 293

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              ++  +++A++WN GY ++V  F N I   +GGTH  G R+ALT  +  Y ++    K
Sbjct: 294 AKGEDHEVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLIK 353

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
               ++ GDDCREG  +V+S+K+ DP+F  QTK KL +SE++  V+  VN+ ++ W + +
Sbjct: 354 DKDGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRSVNEYVNDWFDAN 413

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK I+ K + ++  R AAR+AR++ RRK   D+  LPGKLADC  +DP+ SEL++VE
Sbjct: 414 PAEAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPRSSELYIVE 473

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI ++ FD
Sbjct: 474 GDSAGGSAKAGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEE-FD 532

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL- 550
           I KLRY KI++M DADVDG HI TLLLT  FR MP L+ +G +Y+  PPLY +   K   
Sbjct: 533 IKKLRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVYLANPPLYKLKWSKGTP 592

Query: 551 QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
            Y   ++  +  L             D           N  +                D 
Sbjct: 593 GYAFSDDERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRLLRRVDL 652

Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
              ++A          D     S  ++ A  + F+
Sbjct: 653 EDAQRADELFSILMGDDVAARRSFITRRAKDVRFL 687



 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 8/88 (9%)

Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G    + I+    +QRYKGLGEMNAS+LWETTL+P TR L RV + DA +AD+L
Sbjct: 602 DKLLAEGLEQNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRLLRRVDLEDAQRADEL 661

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI   +     LDI
Sbjct: 662 FSILMGDDVAARRSFITRRAKDVRFLDI 689


>gi|224543251|ref|ZP_03683790.1| hypothetical protein CATMIT_02451 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523784|gb|EEF92889.1| hypothetical protein CATMIT_02451 [Catenibacterium mitsuokai DSM
           15897]
          Length = 645

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 249/597 (41%), Positives = 368/597 (61%), Gaps = 15/597 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N+ YD   IQILKGL+AV+KRP MYIG TD   GLHH+++E++DN+IDE++ GY   I
Sbjct: 3   MSNAHYDESDIQILKGLEAVRKRPGMYIGSTDS-RGLHHLVWEIVDNSIDEAIAGYGKKI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGV 123
           TVTL+ D S TV D GRG+PT ++KE G    EVI+T LHAGGKF+    YK SGGLHGV
Sbjct: 62  TVTLHKDNSVTVEDEGRGMPTGINKETGKPTTEVILTVLHAGGKFSEDGGYKTSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS +L++ + R+G I+   F  G      L   G   N TGT + F P + IF
Sbjct: 122 GSSVVNALSEFLEVTVHRDGVIHTQRFEKGATKIGKLKKVGKT-NKTGTIIHFKPDASIF 180

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F++ T+  RLRE +FL   + I LID+R+ +    T  Y+ G+E F+ +++  K+ 
Sbjct: 181 STTTFSFQTISERLREDAFLLKGMTIELIDERTDKD--ETYQYEKGLEEFIDWINNDKEA 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +    I    + + I +++AM++   Y EN++ F N +   DGGTH  G RS LT+    
Sbjct: 239 VSP-IISFDDTNNEIEVEIAMQFTQSYQENIISFVNLVRTGDGGTHEVGFRSGLTKVFNE 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K   +++ G D REG  +++S+K+P+   +F  QTK KL S   R+++E+  
Sbjct: 298 YARKYALLKAKDKNLEGSDVREGLNAIISVKIPEKYLQFEGQTKSKLGSPIARNILENVT 357

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSE 419
            + ++ +LEE+   A+ +++K++ A+  R AAR+A++  R+ K   +   L GKLA    
Sbjct: 358 FERITYFLEENKDIAEKLIEKMIKAANARQAARKAKEQARKGKNNREAKFLSGKLAPAQS 417

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ +K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A    +L ++EI T+I 
Sbjct: 418 KNKRKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKATQADILKNEEISTMIN 477

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +  G+G D F+ +   Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  P
Sbjct: 478 TINAGVGAD-FNADDSAYDKIIIMTDADTDGAHIQILLLTFFYRYMRDLIKAGKVYIAMP 536

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PLY ++    +  ++ Y  DE+ LE          +++ +     + ++      ++
Sbjct: 537 PLYKVSKKSGKKDNVIYCWDEKDLEAARKKMGRGYDVQRYKGLGEMNAEQLWETTMN 593



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 7/180 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   + ++    +++  +N I       ++   +  D ++           +    
Sbjct: 455 VINTEKATQADILKNEEISTMINTINAGVGADFNADDSAYDKIIIMTDADTDGAHI--QI 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI-FSIGRK----GIS 735
            + +F  +Y R      +           +    K        D       RK    G  
Sbjct: 513 LLLTFFYRYMRDLIKAGKVYIAMPPLYKVSKKSGKKDNVIYCWDEKDLEAARKKMGRGYD 572

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L++V I DA+  +   S LMGD+V+PRRE+I+ N
Sbjct: 573 VQRYKGLGEMNAEQLWETTMNPETRTLIQVTIDDAAIVERSVSVLMGDKVQPRREWIENN 632


>gi|302331777|gb|ADL21970.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, GyrB [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 644

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 395/591 (66%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+  
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEK 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|227529213|ref|ZP_03959262.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350859|gb|EEJ41150.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 676

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 261/599 (43%), Positives = 368/599 (61%), Gaps = 17/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +  +YDA SIQ+LKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MA--TKKETYDASSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119
            D I VT+  D S TV D+GRG+P  +H   G    EVIMT LHAGGKF Q   YK SGG
Sbjct: 58  GDEINVTIEEDNSITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQSDGYKTSGG 116

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALS+ L L I R+   Y+  F + G     L   G      GT V+F P 
Sbjct: 117 LHGVGASVVNALSTNLTLTIVRDHERYQEKFKDGGQPIGTLKKLGHTNAGNGTTVSFKPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF+   ++Y+TL +RLRE +FL   ++I L DKR    ++    YK GI+ FV+YL+ 
Sbjct: 177 PSIFTTTVYDYNTLANRLRESAFLLKGIKIVLTDKRKDHEKQDIFQYKEGIQEFVAYLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             K  +   +   GS+D + +++A ++NDGY E++L F NN+   DGGTH +G RSA T+
Sbjct: 237 G-KDTLGKVLYFDGSQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  K    K   +++ G D REG T+V+S+++P+   +F  QTK+KL + E R +V
Sbjct: 296 TFNEYAHKVGLLKDKDKNLEGSDVREGLTAVVSVRIPERILQFEGQTKDKLGTPEARKIV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414
           +S V++ L   L E+   A+++++K + A   R+AAR+AR+  R  ++      +L GKL
Sbjct: 356 DSIVSEQLGYALMENGDFAQMLIRKSIKAREAREAARKARNQARGGKRKSRKERNLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+
Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEEL 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G G + F++    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +
Sbjct: 476 NTIIYTVGAGAGSE-FNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKI 534

Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           YI  PPLY +         + Y    + L + L  ++            G ++ + L  
Sbjct: 535 YIALPPLYRLQTGRGAKTKITYAWTNDELTE-LTKKAGKSAQLQRFKGLGEMNADQLWE 592



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++              +  +    S  +          ++   ++     
Sbjct: 378 IRKSIKAREAREAARKARNQARGGKRKSRKERNLSGKLTPAQSKNAKKNELFLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  +V    +L   +  +   +   ++   +N 
Sbjct: 438 GSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFNVEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITG- 718
           D ++           +      F +      I + +I      +  L    G K KIT  
Sbjct: 498 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQTGRGAKTKITYA 557

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     K   +QR+KGLGEMNA QLWETT+NP+TR+L++V+I DA  A+   
Sbjct: 558 WTNDELTELTKKAGKSAQLQRFKGLGEMNADQLWETTMNPETRTLIQVRIEDAELAERRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMG++VEPRRE+I++N
Sbjct: 618 TTLMGNKVEPRREWIEDN 635


>gi|284023042|ref|ZP_06377440.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 132]
          Length = 644

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQVLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|104773262|ref|YP_618242.1| DNA gyrase, subunit B [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422343|emb|CAI96851.1| DNA gyrase, subunit B [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 653

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 283/614 (46%), Positives = 401/614 (65%), Gaps = 7/614 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A  
Sbjct: 15  EQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+N D S TV D+GRGIP D+ K+ G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 74  IEVTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y ++F +G +   L   G+    + GT V F P  +IF
Sbjct: 134 GASVVNALSTKLNVTVMRDGKKYYIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIF 193

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +      D  L++R+REL+FLN  ++++  DKR+         ++GGI+ +VS+L+R ++
Sbjct: 194 TETTVFDDKILKNRIRELAFLNKGLKLTFTDKRNDTAETYVYHFEGGIKEYVSFLNRGQE 253

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G  + I +++++++  GY   ++ F NNI   +GG H +G ++ALTR I 
Sbjct: 254 VLFDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVIN 313

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K++  ++ G+D REG T+V+S+K P P+F  QTK KL +S+ R+ V+   +
Sbjct: 314 DYAHKAKILKENDDNLSGEDIREGMTAVISVKHPSPQFEGQTKTKLGNSDARTAVDRAFS 373

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P  A+ IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 374 ETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSND 433

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI TL TAL
Sbjct: 434 PNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 493

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPL
Sbjct: 494 GAGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPL 552

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK ++Y+  +E L DYL +   S + I       G +    L     D    ++ 
Sbjct: 553 YQVRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLWETTMDPE--NRR 610

Query: 601 IKDFYPNHDKTFIE 614
           +    P + K   E
Sbjct: 611 LDRVDPEYAKDADE 624



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R L RV    A  AD++F  LMG+EV PRR+FI++N
Sbjct: 585 VQRYKGLGEMDAEQLWETTMDPENRRLDRVDPEYAKDADEVFEMLMGNEVGPRRKFIEDN 644

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 645 AQYVENLD 652


>gi|326692337|ref|ZP_08229342.1| DNA gyrase, B subunit [Leuconostoc argentinum KCTC 3773]
          Length = 669

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 281/613 (45%), Positives = 402/613 (65%), Gaps = 14/613 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + +     Y+AD IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A
Sbjct: 27  TVDANAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 85

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             ITVT+  D S TV+D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLH
Sbjct: 86  SHITVTIEKDNSITVTDDGRGIPVDIQTKTGKPALETVFTVLHAGGKFGGGGYKVSGGLH 145

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSD 180
           GVG SVVNALS+ L +R+ R+G +Y M F  G ++  +V        + GT V F P +D
Sbjct: 146 GVGASVVNALSTDLDVRVVRDGQVYYMDFQVGRVNTNMVKLDEVPTIERGTIVHFKPDAD 205

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     +NY+TL  R+REL+FLN  ++IS+ DKR  EP   + +++GGI+ +V+YL+  
Sbjct: 206 IFRETTVYNYNTLLTRVRELAFLNKGLRISITDKRPEEPVTESFYFEGGIKEYVNYLNAE 265

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +   P+ ++G  + I +++A+++     +++  FTNNI   +GGTH +G ++ALTR 
Sbjct: 266 KTVVFPEPVYVEGEENGIVVEVALQYTTDVKDSLRTFTNNINTYEGGTHETGFKTALTRV 325

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K++  S+ G+D REG T+++SIK PDP+F  QTK KL +S+ R   +  
Sbjct: 326 INDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 385

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++  S ++ E+P  AK IV+K + A   R AA+RAR++TR++  L+I +LPGKLAD + 
Sbjct: 386 FSETFSRFMMENPSVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 445

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNVE+A  DK+L+++EI T+ T
Sbjct: 446 NDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVEKATLDKVLANEEIRTIFT 505

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTG G D F++ K  YHK+IIMTDADVDGAHIRTLLLT F+R M  LI  G++YI +P
Sbjct: 506 AMGTGFG-DEFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLIDAGYIYIAQP 564

Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           PLYG+     K+ +Y+  +E LED+L             + K  + +      +D     
Sbjct: 565 PLYGVALGNSKTREYLDSDEELEDFLAQL--------PANIKPKVQRYKGLGEMDFDQLA 616

Query: 598 DKLIKDFYPNHDK 610
           D  +   +    +
Sbjct: 617 DTTMDPLHRRLLR 629



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QL +TT++P  R LLRV   DA  AD +F  LMGD+V PRREFI+EN
Sbjct: 601 VQRYKGLGEMDFDQLADTTMDPLHRRLLRVDPADAEAADSIFDMLMGDDVAPRREFIEEN 660

Query: 796 SLPS-ALDI 803
           ++    LDI
Sbjct: 661 AVFVENLDI 669


>gi|325685102|gb|EGD27233.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 653

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 284/614 (46%), Positives = 402/614 (65%), Gaps = 7/614 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A  
Sbjct: 15  EQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+N D S TV D+GRGIP D+ K+ G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 74  IEVTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y ++F +G +   L   G+    + GT V F P  +IF
Sbjct: 134 GASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIF 193

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +      D  L++R+REL+FLN  ++++  DKR          ++GGI+ +VS+L+R ++
Sbjct: 194 TETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYHFEGGIKEYVSFLNRGQE 253

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G  + I +++++++  GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 254 VLFDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 313

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 314 DYAHKAKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 373

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P  A+ IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 374 ETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSND 433

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI TL TAL
Sbjct: 434 PNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 493

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FDI+K RYHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPL
Sbjct: 494 GTGFGAD-FDISKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPL 552

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK ++Y+  +E L DYL +   S + I       G +    L     D    ++ 
Sbjct: 553 YQVRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLWETTMDPE--NRR 610

Query: 601 IKDFYPNHDKTFIE 614
           +    P + K   E
Sbjct: 611 LDRVDPEYAKDADE 624



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R L RV    A  AD++F  LMG+EV PRR+FI++N
Sbjct: 585 VQRYKGLGEMDAEQLWETTMDPENRRLDRVDPEYAKDADEVFEMLMGNEVGPRRKFIEDN 644

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 645 AQYVENLD 652


>gi|293497972|ref|ZP_06665826.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|291096903|gb|EFE27161.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 58-424]
          Length = 644

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 395/591 (66%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP  + ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIEKDNWIKVTDNGRGIPVGIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K+DK  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|169351628|ref|ZP_02868566.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552]
 gi|169291850|gb|EDS73983.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552]
          Length = 641

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 293/639 (45%), Positives = 409/639 (64%), Gaps = 11/639 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+     SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSEEKVKHSYDESDIQVLEGLEAVRKRPGMYIG-TTSIRGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L  D    V D+GRG+PT  H + GIS  E I T LHAGGKF    YKVSGGL
Sbjct: 60  ASHIRVILKDDDVVQVIDDGRGMPTGTHAKTGISTVETIFTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ + R+G++Y   F NG    + L V G + + TGT VTF    
Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHVYYQRFENGGQPVDKLKVVGDS-DITGTIVTFKADK 178

Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF     ++YDTL  R+REL+FLN  +++SL D+R+   R+    Y+GGI+ +VS++++
Sbjct: 179 LIFKEGTVYDYDTLNQRIRELAFLNKGLRLSLEDQRNGINRKQVYHYEGGIKEYVSFINK 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+ +  I ++  + +I+I++AM++NDGY  N+  F NNI   +GGTH  G R ALTR
Sbjct: 239 NKTPIHEEIIYVEDIQQDITIEVAMQYNDGYQSNIYSFCNNINTHEGGTHEEGFRMALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y +     KKD  ++ GDD REG T+++S+K PDP++  QTK KL ++EVR +  +
Sbjct: 299 VINNYAKNKGLLKKDDETLSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIASN 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +   L  +L E+P  AKIIV K + AS  R AA++AR++TRRK  L++++LPGKLADCS
Sbjct: 359 IIATSLDKFLLENPDTAKIIVDKAIIASRARMAAKKAREMTRRKNPLEVSNLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E+F+VEGDSAGGSAK GR R  QAILPLRGKILNVE++R +K+L + EI ++I
Sbjct: 419 SKDPSECEIFIVEGDSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG++ F+++KLRYHKI+IMTDADVDG HIR L+LTF +R +  LI NGF+Y  +
Sbjct: 479 TAFGTGIGEE-FNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENGFVYAAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKI 597
           PPLY +  GK   Y   +E LED         +         G ++ + L         +
Sbjct: 538 PPLYLLKHGKEEHYCYSDEELEDLKTKIGSGAKYSIQRYKGLGEMNADQLWET-----TM 592

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           D   +          +E  +I  +   E  +     +  
Sbjct: 593 DPQKRILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQE 631



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 101/271 (37%), Gaps = 15/271 (5%)

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           II        +       +        L  +      +   + +  I + D         
Sbjct: 383 IIASRARMAAKKAREMTRRKNPLEVSNLPGKLADCSSKDPSECEIFIVEGDSAGGSAKMG 442

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           +  ++            +E++ +  +      + +  +  + +    N    +  K    
Sbjct: 443 RDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMITAFGTGIGEEFNLDKLRYHK---- 498

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                  +V      V    +      F +      I +  +      +  L    ++  
Sbjct: 499 -------IVIMTDADVDGGHIRILMLTFLYRYLKPLIENGFVYAAQPPLYLLKHGKEEHY 551

Query: 716 ITGPCSL--LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
                 L  L T    G K  S+QRYKGLGEMNA QLWETT++P  R L ++ + +A +A
Sbjct: 552 CYSDEELEDLKTKIGSGAK-YSIQRYKGLGEMNADQLWETTMDPQKRILNQIDLDEAMEA 610

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D +F  LMG++VEPRREFIQEN+     LDI
Sbjct: 611 DMIFDMLMGEKVEPRREFIQENAKYVTDLDI 641


>gi|319937326|ref|ZP_08011733.1| DNA topoisomerase parE [Coprobacillus sp. 29_1]
 gi|319807692|gb|EFW04285.1| DNA topoisomerase parE [Coprobacillus sp. 29_1]
          Length = 642

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 262/597 (43%), Positives = 377/597 (63%), Gaps = 16/597 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++++ YD  +IQIL+GL+AV+KRP MYIG TD   GLHH+++E++DNAIDESL G+ + I
Sbjct: 1   MKSNHYDESNIQILEGLEAVRKRPGMYIGSTDY-RGLHHLVWEIVDNAIDESLAGFGNKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGV 123
           TVT+  D +  V D GRG+PT LH   G    EVI+T LHAGGKF+    YK SGGLHGV
Sbjct: 60  TVTIGSDNTIKVEDEGRGMPTGLHAS-GKPTTEVILTILHAGGKFSEDGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL++ + R+G I++  F +G  + +PL V G   N TGT + F P+ +IF
Sbjct: 119 GSSVVNALSEWLEVTVYRDGKIHQQKFEDGAKIISPLKVIGKT-NRTGTTIHFKPNKEIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S  DFNY T+  RLRE +FL   +++ +ID+R+ +    T  Y+ G+EAF+ YL+  KK 
Sbjct: 178 STIDFNYSTICERLRESAFLLKGIEMIVIDERTGK--HETFQYENGLEAFIDYLNYEKKV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +      + I +++A ++ +GY EN++ F N +   DGGTH +G RS  T+    
Sbjct: 236 LH-KTVSFDDESNPIEVEIAFQFTEGYQENLISFVNLVRTGDGGTHETGFRSGFTKVFNE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K   +++ G D REG T ++S+K+P+   +F  QTK KL S E R++VE+ V
Sbjct: 295 YARKYGLLKTKDKNLEGADVREGLTGIISVKIPESLLQFEGQTKSKLGSPEARNIVENVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSE 419
            + ++ +LEE+   A  +V K++ A+  R+AAR+AR+  R+ KG      L GKLA    
Sbjct: 355 YEQINYFLEENKDVANQLVNKMIKAAQARNAARKAREEARKGKGNKVEKILSGKLAPAQS 414

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D KK EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A    +L ++EI T+I 
Sbjct: 415 KDKKKKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVVNTEKAAMADILKNEEISTIIN 474

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G D F+ +   Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI +G +YI  P
Sbjct: 475 TVGAGVGAD-FNADDSNYAKVIIMTDADTDGAHIQVLLLTFFYRYMRGLIQSGRVYIAMP 533

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PLY ++    + +   Y  D++ LED          ++ +     + +       ++
Sbjct: 534 PLYKVSKKNGKHEDSLYAWDDDELEDAKKKIGRGYGVQRYKGLGEMNADQLWETTMN 590



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 15/262 (5%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +       ++          +    ++E     K   +++       +   ++     
Sbjct: 373 VNKMIKAAQARNAARKAREEARKGKGNKVEKILSGKLAPAQSK-DKKKKELYLVEGDSAG 431

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E     ++    +++  +N +       ++   +N 
Sbjct: 432 GSAKQGRDRKYQAILPLRGKVVNTEKAAMADILKNEEISTIINTVGAGVGADFNADDSNY 491

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
             ++           +      F +      I S R+      +  +     K +     
Sbjct: 492 AKVIIMTDADTDGAHIQVLLLTFFYRYMRGLIQSGRVYIAMPPLYKVSKKNGKHE----D 547

Query: 721 SLLDTI---FSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           SL           +K    G  +QRYKGLGEMNA QLWETT+NP+TR+L++V I DA+  
Sbjct: 548 SLYAWDDDELEDAKKKIGRGYGVQRYKGLGEMNADQLWETTMNPETRTLIQVSIEDAALV 607

Query: 774 DDLFSRLMGDEVEPRREFIQEN 795
           +   S LMGD+VEPRRE+I++N
Sbjct: 608 ERRVSVLMGDKVEPRREWIEDN 629


>gi|302543959|ref|ZP_07296301.1| DNA gyrase, B subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302461577|gb|EFL24670.1| DNA gyrase, B subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 676

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 284/652 (43%), Positives = 390/652 (59%), Gaps = 12/652 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + +   SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD
Sbjct: 26  EALAPPSYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHAD 84

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHG
Sbjct: 85  TIDVTILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHG 144

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALSS + + +K +G  +   +  G+   PL     A  +TGT VTF    DIF
Sbjct: 145 VGVSVVNALSSKVSVEVKTDGYRWTQDYKTGVPTAPLAK-NEATEETGTTVTFWADGDIF 203

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY- 235
              +++++TL  R +E++FLN  + ISL D+R        +P  +   Y+GGI  FV+Y 
Sbjct: 204 ETTEYSFETLSRRFQEMAFLNKGLSISLTDEREAHVDEEGKPLSVKYHYEGGIVDFVTYL 263

Query: 236 LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
             R  + +  + I  +       +S+++AM+WN  Y E V  F N I   +GGTH  G R
Sbjct: 264 NSRKGELVHPTVIGFEAEDKERLLSLEIAMQWNTQYSEGVYSFANTIHTHEGGTHEEGFR 323

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK KL ++E +
Sbjct: 324 AALTYLINKYARDRKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAK 383

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + V+  VN+ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRKG+L+ ASLPGK
Sbjct: 384 TFVQKIVNEHLADWLDRNPNEAADIIRKGIQAATARVAARKARDLTRRKGLLETASLPGK 443

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L+DC   DP K E+F+VEGDSAGGSAK GR  + QAILP+RGKILNVE+AR DK+L + E
Sbjct: 444 LSDCQSNDPSKCEIFIVEGDSAGGSAKSGRDPQYQAILPIRGKILNVEKARVDKILQNNE 503

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  L+  G 
Sbjct: 504 VQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGH 562

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +++ +PPLY I  G+        +   D LI     +   +  DS          N  + 
Sbjct: 563 VFLSRPPLYKIKWGRDDFEYAYSDRERDALIQAGREQGKRIKDDSVQRFKGLGEMNAEEL 622

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            +    L              QA          D E   S   + A  + F+
Sbjct: 623 RVTTMDLDSRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 674



 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +   GR      K  S+QR+KGLGEMNA +L  TT++ D+R L +V + DA+QADDLF
Sbjct: 590 DALIQAGREQGKRIKDDSVQRFKGLGEMNAEELRVTTMDLDSRVLGQVTLDDAAQADDLF 649

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 650 SVLMGEDVEARRSFIQRNAKDVRFLDI 676


>gi|294849833|ref|ZP_06790573.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754]
 gi|294823381|gb|EFG39810.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754]
          Length = 644

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 288/591 (48%), Positives = 395/591 (66%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L       + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEV-DTTDKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|313122780|ref|YP_004033039.1| DNA gyrase subunit b [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279343|gb|ADQ60062.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 653

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 284/614 (46%), Positives = 401/614 (65%), Gaps = 7/614 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A  
Sbjct: 15  EQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+N D S TV D+GRGIP D+ K+ G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 74  IEVTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y ++F +G +   L   G+    + GT V F P  +IF
Sbjct: 134 GASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIF 193

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +      D  L++R+REL+FLN  ++++  DKR          ++GGI+ +VS+L+R ++
Sbjct: 194 TETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYHFEGGIKEYVSFLNRGQE 253

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G  + I +++++++  GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 254 VLFDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 313

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K+   ++ G+D REG T+V+S+K P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 314 DYAHKTKILKESDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 373

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P  A+ IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 374 ETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSND 433

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI TL TAL
Sbjct: 434 PNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 493

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FDI+K RYHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPL
Sbjct: 494 GTGFGAD-FDISKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPL 552

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK ++Y+  +E L DYL +   S + I       G +    L     D    ++ 
Sbjct: 553 YQVRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLWETTMDPE--NRR 610

Query: 601 IKDFYPNHDKTFIE 614
           +    P + K   E
Sbjct: 611 LDRVDPEYAKDADE 624



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R L RV    A  AD++F  LMG+EV PRR+FI++N
Sbjct: 585 VQRYKGLGEMDAEQLWETTMDPENRRLDRVDPEYAKDADEVFEMLMGNEVGPRRKFIEDN 644

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 645 AQYVENLD 652


>gi|453419|emb|CAA54665.1| gyrB [Mycoplasma hominis ATCC 23114]
          Length = 648

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 251/600 (41%), Positives = 368/600 (61%), Gaps = 15/600 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M    +   Y+AD+IQIL+GL+AV+KRP MYIG   G  GLHH+++E++DN++DE++ G+
Sbjct: 1   MDKIEEIHKYNADNIQILEGLEAVRKRPGMYIGSI-GFKGLHHLLWEIVDNSVDEAMAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I + L  +    V DNGRG+PT +H     SA E I+T LHAGGKF+  +YKVSGGL
Sbjct: 60  ATEIKIKLYPNNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178
           HGVG SVVNALSS  ++ +KR+G ++   F N GI   PL V G+ +  +TGT + F P 
Sbjct: 120 HGVGASVVNALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNFSEVETGTTIKFHPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I   ++F +DT+    +++++LN  ++I    +   +       ++GG+  +V  L++
Sbjct: 180 YTIMEKENFFFDTIIDHSKQIAYLNKGLKI--TVENVEKNIIKVFCFEGGLIDYVKELNK 237

Query: 239 HKKPLMQSPIRIQG--------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            KK ++   I  +G        +  ++ +++AM++N+ Y  +++ + NNI   DGGTH  
Sbjct: 238 GKKLIVPEVIYAEGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQ 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G   AL R   +Y E +   K     +  +D +EG  +++SIK  DP F  QTK KL + 
Sbjct: 298 GFYDALVRIYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENK 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           + R      ++D L  +L E+P  A+ I++K L +   R    +AR+ +R+   LD+ +L
Sbjct: 358 DARIATNKILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNL 417

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS ++ +  ELF+VEG+SAGGSAK GR R  QAILPLRGK++N E+  F  +LS
Sbjct: 418 PGKLADCSSKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLS 477

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++EI T+I ALGTGI    FDINKL+YHKIIIMTDADVDGAHI TLLLTFF+R M  LI 
Sbjct: 478 NKEIATMIHALGTGI-NTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIE 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            GF+Y+ +PPLY IT GK+++Y  ++   E  +        +        G +    L  
Sbjct: 537 YGFVYLAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQRYKGLGEMDPEQLWE 596



 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E +   +V    ++A  ++ +       +  +      ++      V    +    
Sbjct: 464 VINAEKNSFASVLSNKEIATMIHALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLL 523

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQR 738
             F +      I    +       L  I +G  ++        + I +    ++ +++QR
Sbjct: 524 LTFFYRYMKPLIEYGFVY-LAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQR 582

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P+TR +L+V+I DA+  D +F+ LMG+E+EPR +FIQEN+  
Sbjct: 583 YKGLGEMDPEQLWETTMDPETRKMLQVQIDDAAICDTVFATLMGEEIEPRHDFIQENAKY 642

Query: 799 S-ALDI 803
           +  +DI
Sbjct: 643 ANNIDI 648


>gi|323127404|gb|ADX24701.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 649

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/650 (42%), Positives = 398/650 (61%), Gaps = 19/650 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+      ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDDIRVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P
Sbjct: 119 LHGVGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL  +V++SL D R  EP      Y+ G++ FV YL+
Sbjct: 179 DDKIFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T
Sbjct: 239 EDKETLTP-VIYMEGQDHDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDSIVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMVHTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LED          I       G ++ N L  
Sbjct: 537 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWE 595

Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                +    I   I D      +  +     +       +  +  +L  
Sbjct: 596 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       ++    N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVHTIGAGVGADFNLEDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K +     
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKVSYA 560

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 621 SVLMGDKAAPRRQWIEDN 638


>gi|73916418|gb|AAZ93077.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 275/623 (44%), Positives = 389/623 (62%), Gaps = 19/623 (3%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +G +SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG   VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAIL LRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILSLRGKVVNTAKAKMADILKNKE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LE+          ++ +     + +      
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            ++   +  I   I+D      +
Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y R                      G K ++        L+ +     KG +
Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+VEPRR++I++N
Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636


>gi|71910524|ref|YP_282074.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS5005]
 gi|71853306|gb|AAZ51329.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS5005]
          Length = 649

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/650 (42%), Positives = 399/650 (61%), Gaps = 19/650 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+      ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDDIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G++Y   F N G     L   G+A    +GT VTF+P
Sbjct: 119 LHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+
Sbjct: 179 DDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T
Sbjct: 239 EDKETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           VES V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LED          I       G ++ N L  
Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWE 595

Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                +    I   I D      +  +     +       +  +  +L  
Sbjct: 596 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 8/262 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 378 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 437

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 438 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 497

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DK 713
            N D ++           +      F +      + +  +    L  L  +  G    +K
Sbjct: 498 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY-IALPPLYKMSKGKGKTEK 556

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A
Sbjct: 557 IAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARA 616

Query: 774 DDLFSRLMGDEVEPRREFIQEN 795
           +   S LMGD+  PRR++I++N
Sbjct: 617 ERRVSVLMGDKAAPRRQWIEDN 638


>gi|227543440|ref|ZP_03973489.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri CF48-3A]
 gi|300910107|ref|ZP_07127567.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri
           SD2112]
 gi|227186592|gb|EEI66663.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri CF48-3A]
 gi|300892755|gb|EFK86115.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri
           SD2112]
          Length = 674

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 260/595 (43%), Positives = 369/595 (62%), Gaps = 15/595 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +   YDA SIQ+LKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY D I
Sbjct: 8   KEEVKYDASSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGDEI 66

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGGLHGV 123
            VT+  D + TV D+GRG+P  +H   G    EVIMT LHAGGKF Q   YK SGGLHGV
Sbjct: 67  NVTIEADNAITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGV 125

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALSS L L I R+   Y+  F + G     L   G    + GT V+F P   IF
Sbjct: 126 GASVVNALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIF 185

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   ++Y+TL +RLRE +FL   ++I+L DKR+ + ++    +  GI+ FVSYL+   K 
Sbjct: 186 STTVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFDNGIQEFVSYLNEG-KD 244

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++   +   G +D + +++A ++NDGY E++L F NN+   DGGTH +G RSA T+    
Sbjct: 245 VLGKTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTKTFNE 304

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y +K    K + +++ G D REG T+V+S+++P+   +F  QTK+KL + E R +V++ V
Sbjct: 305 YAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIVDAIV 364

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
           ++ L+  L E+   A+++++K L A   R+AAR+AR+  R  ++      +L GKL    
Sbjct: 365 SEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQ 424

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ T+I
Sbjct: 425 SKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTII 484

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G G + F++    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +YI  
Sbjct: 485 YTVGAGAGSE-FNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIAL 543

Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY + R      ++ Y    E L                    G ++ + L  
Sbjct: 544 PPLYRLQRGRGAKTNITYAWTNEELTKLTKKMG-KGAQLQRFKGLGEMNADQLWE 597



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++              +  +    S  +          ++   ++     
Sbjct: 383 IRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQSKNAKKNELFLVEGDSAG 442

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  +V    +L   +  +   +   ++   +N 
Sbjct: 443 GSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFNVEDSNY 502

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      I + +I      +  L    G K  IT  
Sbjct: 503 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQRGRGAKTNITYA 562

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QR+KGLGEMNA QLWETT+NP+TR+L++V+I DA  A+   
Sbjct: 563 WTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPETRTLIQVRIEDAELAERRV 622

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMG++VEPRRE+I+EN
Sbjct: 623 TTLMGNKVEPRREWIEEN 640


>gi|222097051|ref|YP_002531108.1| DNA topoisomerase iv subunit b [Bacillus cereus Q1]
 gi|221241109|gb|ACM13819.1| DNA topoisomerase IV, B subunit [Bacillus cereus Q1]
          Length = 640

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 261/646 (40%), Positives = 393/646 (60%), Gaps = 18/646 (2%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+ D I+V ++ D S +V 
Sbjct: 2   LEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGFGDEISVVIHKDNSISVI 60

Query: 78  DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137
           D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGLHGVG SVVNALS WL +
Sbjct: 61  DKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVV 119

Query: 138 RIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
            IKR+GNIYE  F N G+    L   G    ++GT + F P + IFS  ++NY+TL  RL
Sbjct: 120 TIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDTTIFSTTNYNYETLCERL 178

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  K  +    +   G ++ 
Sbjct: 179 RESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHP-VVYFTGEQNG 235

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR    Y  K    K+  ++
Sbjct: 236 IEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVSLLKEKDKN 295

Query: 317 VIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
           + G D REG  +++S+++P+   +F  QTK KL +SE RS +++ V++ L+ +LEE+P  
Sbjct: 296 LEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFLEENPDV 355

Query: 375 AKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           A ++V+K + A+  R+AAR+AR+   T +K      +L GKL     R+P+K+EL+LVEG
Sbjct: 356 ATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNELYLVEG 415

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSAGGSAKQGR R  QA+LPLRGK++N E+A+   +  ++EI T+I A+G G+G + FD+
Sbjct: 416 DSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVGNE-FDV 474

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGK 548
             + Y K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++I  PPLY ++    + +
Sbjct: 475 EDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSE 534

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK--IDKLIKDFYP 606
            ++Y   ++ L++          ++ +     + +       ++   +  I   I D   
Sbjct: 535 VIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKIDDAAR 594

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
              +                ++ +   +  +     N +  ++E  
Sbjct: 595 AERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMETEVE 640



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 440 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 499

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 500 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQ 559

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 560 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 617


>gi|326803543|ref|YP_004321361.1| DNA topoisomerase IV, B subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650531|gb|AEA00714.1| DNA topoisomerase IV, B subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 691

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 260/674 (38%), Positives = 389/674 (57%), Gaps = 22/674 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   ++YD  SIQIL+GL+AV+KRP MYIG TD   GLHH++YE++DN+IDE+L GY
Sbjct: 1   MAKN-SKATYDESSIQILEGLEAVRKRPGMYIGSTDN-RGLHHLVYEIVDNSIDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+VT++ D S TV+DNGRG+P   H   G    EVI+T LHAGGKF++ +YK SGGL
Sbjct: 59  CDEISVTIHEDNSVTVTDNGRGMPIGKHSS-GKPTVEVILTVLHAGGKFSESAYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++ + R+   Y  SF  G   +   +T      TGT + F P   
Sbjct: 118 HGVGSSVVNALSDSLEVTVYRDNKKYYQSFSQGGKPHKPKLTSHKSKQTGTSIHFHPDPK 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +FN DT++ +LRE +FL   + I   D+++    + +  Y+ G+  F+ YL+ +K
Sbjct: 178 IFGATEFNSDTIKEQLREKAFLTKGLAIHFTDEKTDS--QESFHYEDGLVEFIHYLNENK 235

Query: 241 KPLMQSPIRIQGSR-DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + L          +  NI ++LA ++NDGY E +L F NN+   DGGTH + L++ +T+ 
Sbjct: 236 EVLQGVTYIEDKDKSSNIEMELAFQYNDGYSETILSFVNNVRTPDGGTHETALKTGMTKA 295

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K  ++++ G D REGFT+V+S+++P+   +F  QTK KL + + R  VE
Sbjct: 296 FNEYARKVNLIKPKEKNLEGSDVREGFTAVISVRIPEEILQFEGQTKGKLGTPQARLAVE 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415
           + VN  LS +L E+   A+++V+K + A   R+AAR+AR+ +R  +KG      L GKL 
Sbjct: 356 NMVNTHLSIYLLENGEIAQMLVRKAIKARQTREAARKAREESRHSKKGKSKETLLSGKLT 415

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ KK+ELFLVEGDSAGGSAK GR R+ QAILPLRGK+LN E+A    +L ++E+ 
Sbjct: 416 PAQSKNTKKNELFLVEGDSAGGSAKLGRDRKFQAILPLRGKVLNTEKASLTDILKNEELN 475

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   FDI+   Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 476 TIIHTVGAGVG-PEFDIHDSNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 534

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + + Y   +E L            ++ +     + +       +
Sbjct: 535 IAMPPLYKLSRGKGKNEKIAYAWTDEELAQETKKFGKGYTLQRYKGLGEMNADQLWDTTM 594

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +   +  I   + D      +       +      E  ++          +  + + E +
Sbjct: 595 NPETRTLIRVTLDDLSQAEKRV-----SVLMGNKVEPRRDWIEDNVQFTMDEEDKLLEHA 649

Query: 650 EKSWHGSINNSDIL 663
               + +I  S+++
Sbjct: 650 NHEENDAIEASELI 663



 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 11/267 (4%)

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +  +    + +  +    +   E     +  S+E  L        SKN      ++  
Sbjct: 372 IAQMLVRKAIKARQTREAARKAREESRHSKKGKSKETLLSGKLTPAQSKN---TKKNELF 428

Query: 596 KIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
            ++           +    QA++     V N E     ++    +L   ++ +       
Sbjct: 429 LVEGDSAGGSAKLGRDRKFQAILPLRGKVLNTEKASLTDILKNEELNTIIHTVGAGVGPE 488

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NG 711
           +    +N D ++           +      F +      I + ++      +  L    G
Sbjct: 489 FDIHDSNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIAMPPLYKLSRGKG 548

Query: 712 DKIKIT---GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
              KI        L       G KG ++QRYKGLGEMNA QLW+TT+NP+TR+L+RV + 
Sbjct: 549 KNEKIAYAWTDEELAQETKKFG-KGYTLQRYKGLGEMNADQLWDTTMNPETRTLIRVTLD 607

Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN 795
           D SQA+   S LMG++VEPRR++I++N
Sbjct: 608 DLSQAEKRVSVLMGNKVEPRRDWIEDN 634


>gi|116513233|ref|YP_812139.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092548|gb|ABJ57701.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325124860|gb|ADY84190.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 653

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 283/614 (46%), Positives = 400/614 (65%), Gaps = 7/614 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A  
Sbjct: 15  EQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+N D S TV D+GRGIP D+ K+ G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 74  IEVTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y ++F +G +   L   G+    + GT V F P  +IF
Sbjct: 134 GASVVNALSTKLNVTVMRDGKKYYIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIF 193

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +      D  L++R+REL+FLN  ++++  DKR          ++GGI+ +VS+L+R ++
Sbjct: 194 TETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYHFEGGIKEYVSFLNRGQE 253

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G  + I +++++++  GY   ++ F NNI   +GG H +G ++ALTR I 
Sbjct: 254 VLFDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVIN 313

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K++  ++ G+D REG T+V+S+K P P+F  QTK KL +S+ R+ V+   +
Sbjct: 314 DYAHKAKILKENDDNLSGEDIREGMTAVISVKHPSPQFEGQTKTKLGNSDARTAVDRAFS 373

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P  A+ IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 374 ETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSND 433

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI TL TAL
Sbjct: 434 PNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 493

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPL
Sbjct: 494 GAGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPL 552

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK ++Y+  +E L DYL +   S + I       G +    L     D    ++ 
Sbjct: 553 YQVRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLWETTMDPE--NRR 610

Query: 601 IKDFYPNHDKTFIE 614
           +    P + K   E
Sbjct: 611 LDRVDPEYAKDADE 624



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R L RV    A  AD++F  LMG+EV PRR+FI++N
Sbjct: 585 VQRYKGLGEMDAEQLWETTMDPENRRLDRVDPEYAKDADEVFEMLMGNEVGPRRKFIEDN 644

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 645 AQYVENLD 652


>gi|269115151|ref|YP_003302914.1| DNA gyrase subunit B [Mycoplasma hominis]
 gi|290457646|sp|P43053|GYRB_MYCHP RecName: Full=DNA gyrase subunit B
 gi|268322776|emb|CAX37511.1| DNA gyrase subunit B [Mycoplasma hominis ATCC 23114]
          Length = 648

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 251/600 (41%), Positives = 369/600 (61%), Gaps = 15/600 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M    +   Y+AD+IQIL+GL+AV+KRP MYIG   G  GLHH+++E++DN++DE++ G+
Sbjct: 1   MDKIEEIHKYNADNIQILEGLEAVRKRPGMYIGSI-GFKGLHHLLWEIVDNSVDEAMAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I + L  +    V DNGRG+PT +H     SA E I+T LHAGGKF+  +YKVSGGL
Sbjct: 60  ATEIKIKLYPNNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178
           HGVG SVVNALSS  ++ +KR+G ++   F N GI   PL V G+ +  +TGT + F P 
Sbjct: 120 HGVGASVVNALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I   ++F++DT+    +++++LN  ++I    +   +       ++GG+  +V  L++
Sbjct: 180 YTIMEKENFDFDTIIDHSKQIAYLNKGLKI--TVENVEKNIIKVFCFEGGLIDYVKELNK 237

Query: 239 HKKPLMQSPIRIQG--------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            KK ++   I  +G        +  ++ +++AM++N+ Y  +++ + NNI   DGGTH  
Sbjct: 238 GKKLIVPEVIYAEGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQ 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G   AL R   +Y E +   K     +  +D +EG  +++SIK  DP F  QTK KL + 
Sbjct: 298 GFYDALVRIYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENK 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           + R      ++D L  +L E+P  A+ I++K L +   R    +AR+ +R+   LD+ +L
Sbjct: 358 DARIATNKILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNL 417

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS ++ +  ELF+VEG+SAGGSAK GR R  QAILPLRGK++N E+  F  +LS
Sbjct: 418 PGKLADCSSKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLS 477

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++EI T+I ALGTGI    FDINKL+YHKIIIMTDADVDGAHI TLLLTFF+R M  LI 
Sbjct: 478 NKEIATMIHALGTGI-NTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIE 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
            GF+Y+ +PPLY IT GK+++Y  ++   E  +        +        G +    L  
Sbjct: 537 YGFVYLAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQRYKGLGEMDPEQLWE 596



 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 4/186 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E +   +V    ++A  ++ +       +  +      ++      V    +    
Sbjct: 464 VINAEKNSFASVLSNKEIATMIHALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLL 523

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQR 738
             F +      I    +       L  I +G  ++        + I +    ++ +++QR
Sbjct: 524 LTFFYRYMKPLIEYGFVY-LAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQR 582

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P+TR +L+V+I DA+  D +F+ LMG+E+EPR +FIQEN+  
Sbjct: 583 YKGLGEMDPEQLWETTMDPETRKMLQVQIDDAAICDTVFATLMGEEIEPRHDFIQENAKY 642

Query: 799 S-ALDI 803
           +  +DI
Sbjct: 643 ANNIDI 648


>gi|283958118|ref|ZP_06375569.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|283790267|gb|EFC29084.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 665

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 267/598 (44%), Positives = 372/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +L ++EI 
Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDILKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|308173787|ref|YP_003920492.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
 gi|307606651|emb|CBI43022.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
 gi|328553288|gb|AEB23780.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens TA208]
 gi|328911925|gb|AEB63521.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3]
          Length = 655

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 268/661 (40%), Positives = 392/661 (59%), Gaps = 23/661 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MARK-QQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEVLAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +V D GRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GDHIIVTIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I+R+G++Y+  F N G     L   G+      T   F P  
Sbjct: 118 HGVGASVVNALSEWLTVTIERDGHVYKQRFENGGKPVTSLEKIGTTKKTG-TLTHFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +FS   +N+DTL  RLRE +FL   ++I LID+R+    +   +Y+ GIEAFV+YL+  
Sbjct: 177 SMFSATVYNFDTLSERLRESAFLLKGLKIELIDERND--VKEVFYYENGIEAFVAYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +  +G   +I +D A ++NDGY EN+L F NN+  KDGGTH SG ++A+TR 
Sbjct: 235 KDALC-EVVSFEGEHHDIEVDFAFQFNDGYSENMLSFVNNVRTKDGGTHESGAKTAMTRA 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS  +
Sbjct: 294 FNEYARKVALLKEKDKNLEGADIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAAD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + +++ L+ +LEE+   A ++VKK + AS  R+AAR+AR+   + +K     A+L GKL 
Sbjct: 354 AVISENLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F+I  + Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G ++
Sbjct: 474 TIIHAIGGGVGAD-FEIEDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEQGKVF 532

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY +++G   + +       +Y  +    + +         I +      ++   
Sbjct: 533 IALPPLYKVSKGSGKKEII------EYAWSDEEMDGVLKKVGKGYTIQRYKGLGEMNADQ 586

Query: 596 KIDKLIKDFYPNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
             +  +        +  I+ A            +  +     +   +A  L+  +   E 
Sbjct: 587 LWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 646

Query: 652 S 652
            
Sbjct: 647 E 647



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 102/263 (38%), Gaps = 6/263 (2%)

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
                + +       ++               +      S  +          ++   ++
Sbjct: 370 TATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVE 429

Query: 599 KLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
                      +    QAV+     V N E  +  ++    ++   ++ I       +  
Sbjct: 430 GDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFEI 489

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
              N D ++           +      F +      I   ++      +  +     K +
Sbjct: 490 EDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEQGKVFIALPPLYKVSKGSGKKE 549

Query: 716 I---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           I         +D +     KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++
Sbjct: 550 IIEYAWSDEEMDGVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAAR 609

Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795
            +   + LMGD+VEPRR++I++N
Sbjct: 610 VERRVTTLMGDKVEPRRKWIEKN 632


>gi|253731987|ref|ZP_04866152.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724397|gb|EES93126.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320143913|gb|EFW35685.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 694

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 264/594 (44%), Positives = 369/594 (62%), Gaps = 14/594 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY + I
Sbjct: 33  NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 91

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 92  DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 150

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
            SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   IF  
Sbjct: 151 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 210

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  K+ L
Sbjct: 211 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 270

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    Y
Sbjct: 271 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 329

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+S V 
Sbjct: 330 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 389

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL     
Sbjct: 390 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 449

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I 
Sbjct: 450 KNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 509

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  P
Sbjct: 510 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 568

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 569 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 621



 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 407 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 466

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 467 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 526

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 527 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 586

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 587 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 646

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 647 TTLMGDKVQPRREWIEKH 664


>gi|229544207|ref|ZP_04433266.1| DNA topoisomerase IV, B subunit [Bacillus coagulans 36D1]
 gi|229325346|gb|EEN91022.1| DNA topoisomerase IV, B subunit [Bacillus coagulans 36D1]
          Length = 659

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 264/662 (39%), Positives = 396/662 (59%), Gaps = 17/662 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKQNILEYNDDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNAVDEALSGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ D S +V D GRG+P  +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 60  GNHIIVNIHKDNSISVQDFGRGMPVGMH-KLGKPTTEVILTILHAGGKFGQGGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G +YE  F + G  +  L  T    N TGT + F P  
Sbjct: 119 HGVGASVVNALSEWLVVTIHRDGYVYEQRFRDGGKPETTLEKT-GKTNKTGTTIHFKPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   FNYDTL  RLRE +FL   ++I + D+R    R     Y+ GIEAFV YL+  
Sbjct: 178 SIFSTITFNYDTLCERLRESAFLLKGLKIEITDERFG--RHDLFHYENGIEAFVQYLNEG 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L    + I+G  + I  + A ++NDG+ EN+L F NN+  KDGGTH +G ++ALTR 
Sbjct: 236 KEVLHP-VVFIEGETNGIEAEFAFQFNDGFSENILSFVNNVRTKDGGTHEAGAKTALTRV 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           +  Y  K+   K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V+
Sbjct: 295 VNDYARKTGLLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V++ LS +LEE+P  + ++++K + AS  R+AAR+AR+   + +K      +L GKL 
Sbjct: 355 TIVSEHLSYFLEENPDTSNLLIRKAIKASQAREAARKAREEARSGKKRKKSETTLSGKLT 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P+++EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 415 PAQSRNPQRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F++  + Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 475 TIIYTIGAGVG-PEFNLEDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 533

Query: 536 IIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY +++     + ++Y   E+ L++ +        ++ +     + +       +
Sbjct: 534 IALPPLYKVSKGTGRKEIVEYAWTEKELDETIKKVGRGYILQRYKGLGEMNADQLWETTM 593

Query: 592 D-DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           + +   + ++  D     ++              +  +           N L+      E
Sbjct: 594 NPETRTLIRVRIDDAARAERRVTTLMGDKVEPRRQWIESHVEFGLEDDTNILDNENLMIE 653

Query: 651 KS 652
           + 
Sbjct: 654 EG 655



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 105/264 (39%), Gaps = 8/264 (3%)

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
                I +       ++               +      S  +          ++   ++
Sbjct: 371 TSNLLIRKAIKASQAREAARKAREEARSGKKRKKSETTLSGKLTPAQSRNPQRNELYLVE 430

Query: 599 KLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
                      +    QAV+     V N E  +  ++    ++   +  I       ++ 
Sbjct: 431 GDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYTIGAGVGPEFNL 490

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
              N D ++           +      F +      I + ++      +  +     + +
Sbjct: 491 EDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYKVSKGTGRKE 550

Query: 716 IT----GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           I         L +TI  +GR G  +QRYKGLGEMNA QLWETT+NP+TR+L+RV+I DA+
Sbjct: 551 IVEYAWTEKELDETIKKVGR-GYILQRYKGLGEMNADQLWETTMNPETRTLIRVRIDDAA 609

Query: 772 QADDLFSRLMGDEVEPRREFIQEN 795
           +A+   + LMGD+VEPRR++I+ +
Sbjct: 610 RAERRVTTLMGDKVEPRRQWIESH 633


>gi|285817032|gb|ADC37519.1| Topoisomerase IV subunit B [Staphylococcus aureus 04-02981]
 gi|312829750|emb|CBX34592.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 665

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 264/601 (43%), Positives = 376/601 (62%), Gaps = 14/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+G+IY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY +     + K ++Y   +E L            ++ +     + S+      +
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNSEQLWETTM 595

Query: 592 D 592
           +
Sbjct: 596 N 596



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN+ QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNSEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|209559258|ref|YP_002285730.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes NZ131]
 gi|209540459|gb|ACI61035.1| Topoisomerase IV subunit B [Streptococcus pyogenes NZ131]
          Length = 649

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/650 (42%), Positives = 399/650 (61%), Gaps = 19/650 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+      ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDDIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G++Y   F N G     L   G+A    +GT VTF+P
Sbjct: 119 LHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+
Sbjct: 179 DDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T
Sbjct: 239 EDKETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           VES V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LED          I       G ++ N L  
Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWE 595

Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                +    I   I D      +  +     +       +  +  +L  
Sbjct: 596 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 378 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 437

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 438 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 497

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712
            N D ++           +   + + +F  +Y R           L  L  +  G    +
Sbjct: 498 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 555

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           KI        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++
Sbjct: 556 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 615

Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795
           A+   S LMGD+  PRR++I++N
Sbjct: 616 AERRVSVLMGDKAAPRRQWIEDN 638


>gi|331001824|ref|ZP_08325346.1| hypothetical protein HMPREF0491_00208 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412798|gb|EGG92181.1| hypothetical protein HMPREF0491_00208 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 637

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 256/619 (41%), Positives = 371/619 (59%), Gaps = 14/619 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI +L+GL+AV+ RP MYIG   G  GL+H+IYE++DN+IDE L GY   I VT
Sbjct: 2   QDYNAGSITVLEGLEAVRVRPGMYIGGV-GVKGLNHLIYEIMDNSIDEHLAGYCKNIWVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGSCTV D+GRGIP ++H++ GISA  V+++ LHAGGKF+  SYK SGGLHGVG SV
Sbjct: 61  LNADGSCTVKDDGRGIPVEMHQK-GISAERVVLSTLHAGGKFDNASYKTSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----TGSAGNDTGTEVTFLPSSDIF 182
           VNALS +L ++I R+G I+   +  GI    L        G    ++GTE+TFLP + IF
Sbjct: 120 VNALSDFLDIKISRDGYIHHDRYEKGIPVIELKKGLLPTIGKTK-ESGTEITFLPDNTIF 178

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            V  F  + L+ R+ E ++LN  + +  I+ R  E  E T +   GI A+V  L++ K+ 
Sbjct: 179 EVTKFKAEWLKSRMHESAYLNPGLMLHFINLRENEYEERTFYEPDGIVAYVKELNKGKEV 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +       +G  D I +++A+++ D + EN+L F NNI  ++GGTH++G ++  T  I +
Sbjct: 239 MHAPISY-KGICDGIDVEIAIQFVDAFEENILGFCNNIFTQEGGTHIAGFKTKFTGLINT 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y       K    +  G D R G T+++SIK P+P F  QTK KL S++    V +   D
Sbjct: 298 YARDLGVLKDKDSNFTGADTRNGMTAIISIKHPNPMFEGQTKTKLASADATRAVLTVTGD 357

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ + + +    K I+     ++ +R A  RA+     K      S  GKLA+C  +DP
Sbjct: 358 ELTRFFDRNVDVIKSIISCAEKSAKIRKAEERAKTNMLTKSKFSFES-NGKLANCESKDP 416

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I   G
Sbjct: 417 SKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINTFG 476

Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            G  +   + FDI+KLRY KII+MTDADVDG+HI TLLLTF +R MP LI++G +YI  P
Sbjct: 477 CGFSEGYGNDFDISKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYIAMP 536

Query: 540 PLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PL+  + +     Y+ DE++LEDY      +  ++ +     + ++      +D   ++ 
Sbjct: 537 PLFKVVPKRGEGIYLYDEKALEDYKKKHKDNFTLQRYKGLGEMDAEQLWETTLDPERRVL 596

Query: 599 KLIKDFYPNHDKTFIEQAV 617
           K ++           E  +
Sbjct: 597 KKVEIEDARLASEVTELLM 615



 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 6/187 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI----AEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
           + N E      V   +++   +N      +E     +  S    D ++      V    +
Sbjct: 451 ILNVEKASIDKVLANAEIKTMINTFGCGFSEGYGNDFDISKLRYDKIILMTDADVDGSHI 510

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIGRKGIS 735
                 F +    + I+   +      +  ++   G+ I +      L+      +   +
Sbjct: 511 DTLLLTFLYRFMPELIYDGHVYIAMPPLFKVVPKRGEGIYLYD-EKALEDYKKKHKDNFT 569

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETTL+P+ R L +V+I DA  A ++   LMG +V PRR FI E+
Sbjct: 570 LQRYKGLGEMDAEQLWETTLDPERRVLKKVEIEDARLASEVTELLMGSDVAPRRNFIHEH 629

Query: 796 SLPSALD 802
           +  + +D
Sbjct: 630 AREAVID 636


>gi|256843827|ref|ZP_05549314.1| DNA gyrase, B subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256613732|gb|EEU18934.1| DNA gyrase, B subunit [Lactobacillus crispatus 125-2-CHN]
          Length = 654

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/611 (44%), Positives = 395/611 (64%), Gaps = 7/611 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN+IDE L G+A  
Sbjct: 16  EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 74

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+N DGS TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 75  IEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 134

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y + F +G + + +   G+   ++ GT V F P  DIF
Sbjct: 135 GASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDEHGTIVHFYPDPDIF 194

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +      D  L++R+ EL+FLN  + ++  DKR          ++GGI+ +V++L++ ++
Sbjct: 195 TETIVFDDKILKNRIHELAFLNKGLTLTFTDKRKDTAETDVYKFEGGIKEYVAFLNKGQE 254

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 255 VLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 314

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  KS   K    ++ G+D REG T+++S+K P P+F  QTK KL +S+ R+ V+   +
Sbjct: 315 DYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQFEGQTKTKLGNSDARTAVDKAFS 374

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 375 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 434

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI +L TAL
Sbjct: 435 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 494

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M  +I  G++YI KPPL
Sbjct: 495 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIDKGYVYIAKPPL 553

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK ++Y+  +E L DYL +   S +         G +    L          ++ 
Sbjct: 554 YQVRQGKVVRYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMDPEQLWET--TMNPENRR 611

Query: 601 IKDFYPNHDKT 611
           +    P + K 
Sbjct: 612 LDRVSPEYAKD 622



 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVK 346

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            PS    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +        +     L D +       K  +
Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPK-PT 585

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRR+FIQ+N
Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVSPRRDFIQKN 645

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 646 AKYVENLD 653


>gi|21282970|ref|NP_646058.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MW2]
 gi|57650358|ref|YP_186242.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160112|ref|YP_493947.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|221141851|ref|ZP_03566344.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258451752|ref|ZP_05699776.1| topoisomerase IV subunit B [Staphylococcus aureus A5948]
 gi|262049827|ref|ZP_06022690.1| DNA topoisomerase IV subunit B [Staphylococcus aureus D30]
 gi|262052164|ref|ZP_06024371.1| DNA topoisomerase IV subunit B [Staphylococcus aureus 930918-3]
 gi|282920622|ref|ZP_06328343.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9765]
 gi|284024355|ref|ZP_06378753.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           132]
 gi|297207992|ref|ZP_06924423.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300912076|ref|ZP_07129519.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304381069|ref|ZP_07363723.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|21204409|dbj|BAB95106.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MW2]
 gi|57284544|gb|AAW36638.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126086|gb|ABD20600.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|257860583|gb|EEV83407.1| topoisomerase IV subunit B [Staphylococcus aureus A5948]
 gi|259159908|gb|EEW44945.1| DNA topoisomerase IV subunit B [Staphylococcus aureus 930918-3]
 gi|259162051|gb|EEW46630.1| DNA topoisomerase IV subunit B [Staphylococcus aureus D30]
 gi|269940852|emb|CBI49234.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594284|gb|EFB99271.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9765]
 gi|296887235|gb|EFH26137.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300886322|gb|EFK81524.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302751185|gb|ADL65362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340378|gb|EFM06318.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315196388|gb|EFU26740.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329314032|gb|AEB88445.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329730909|gb|EGG67285.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 665

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 372/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|315651450|ref|ZP_07904473.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
           saburreum DSM 3986]
 gi|315486270|gb|EFU76629.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
           saburreum DSM 3986]
          Length = 637

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 257/619 (41%), Positives = 369/619 (59%), Gaps = 14/619 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI +L+GL+AV+ RP MYIG   G  GL+H+IYE++DN+IDE L GY   I VT
Sbjct: 2   QDYNAGSITVLEGLEAVRVRPGMYIGGV-GVKGLNHLIYEIMDNSIDEHLAGYCKNIWVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN DGSCTV D+GRGIP ++H++ G+SA  V+++ LHAGGKF+ +SYK SGGLHGVG SV
Sbjct: 61  LNADGSCTVRDDGRGIPVEMHQK-GVSAERVVLSTLHAGGKFDNESYKTSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----TGSAGNDTGTEVTFLPSSDIF 182
           VNALSS+L ++I R   I+   +  G+    L        G    ++GTE+TFLP   IF
Sbjct: 120 VNALSSFLDIKIYRGRYIHHDRYERGVPVIELKKGLLPTVGKTK-ESGTEITFLPDDTIF 178

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            V  F  D L+ R+ E ++LN  + +  I+KR  E  E       GI A+V  L++ K+ 
Sbjct: 179 EVTKFRADWLKSRMHESAYLNPGLILHFINKRENEYEEKIYHEPEGIVAYVKELNKGKEV 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +       +G  DNI ++ A+++ D + EN+L F NNI  ++GGTH+ G ++  T  I +
Sbjct: 239 MHAPISY-KGVCDNIEVEAAIQFVDAFEENILGFCNNIFTQEGGTHIVGFKTKFTGLINT 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +    K    +  G D R G T+++SIK PDP F  QTK KL S++    V +   D
Sbjct: 298 YARELGILKDKDSNFTGADTRNGMTAIVSIKHPDPMFEGQTKTKLASADATRAVLTVTGD 357

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ + + +    K I+     ++ +R A  RA+     K      S  GKLA+C  +DP
Sbjct: 358 ELTRYFDRNVDVVKSIISCAEKSAKIRKAEERAKTNMLTKSKFSFES-NGKLANCESKDP 416

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  DK+L++ EI T+I   G
Sbjct: 417 SKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINTFG 476

Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            G  +   + FDI+KLRY KII+MTDADVDG+HI TLLLTF +R MP LI++G +YI  P
Sbjct: 477 CGFSEGYGNDFDISKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYIAMP 536

Query: 540 PLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PL+  + +     Y+ DE++LEDY      +  ++ +     + ++      +D   ++ 
Sbjct: 537 PLFKVVPKRGEGVYLYDEKALEDYRKKHKDNFTLQRYKGLGEMDAEQLWETTLDPERRVL 596

Query: 599 KLIKDFYPNHDKTFIEQAV 617
           K ++           E  +
Sbjct: 597 KKVEIEDARLASEITELLM 615



 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 6/187 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFI----AEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
           + N E      V   +++   +N      +E     +  S    D ++      V    +
Sbjct: 451 ILNVEKASIDKVLANAEIKTMINTFGCGFSEGYGNDFDISKLRYDKIILMTDADVDGSHI 510

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIGRKGIS 735
                 F +    + I+   +      +  ++   G+ + +      L+      +   +
Sbjct: 511 DTLLLTFLYRFMPELIYDGHVYIAMPPLFKVVPKRGEGVYLYD-EKALEDYRKKHKDNFT 569

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETTL+P+ R L +V+I DA  A ++   LMG +V PRR FI E+
Sbjct: 570 LQRYKGLGEMDAEQLWETTLDPERRVLKKVEIEDARLASEITELLMGSDVTPRRNFIHEH 629

Query: 796 SLPSALD 802
           +  + +D
Sbjct: 630 AREAVID 636


>gi|269793364|ref|YP_003312819.1| DNA gyrase subunit B [Sanguibacter keddieii DSM 10542]
 gi|269095549|gb|ACZ19985.1| DNA gyrase subunit B [Sanguibacter keddieii DSM 10542]
          Length = 683

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 271/605 (44%), Positives = 377/605 (62%), Gaps = 28/605 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             +  Y A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GY D I
Sbjct: 19  TVDGGYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYCDHI 77

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DG   V DNGRGIP D+H  EG    EV+MT LHAGGKF    Y VSGGLHGVG
Sbjct: 78  EVTLLDDGGVRVVDNGRGIPVDIHPTEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVG 137

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           +SVVNALS+ ++  ++R+G  +  SF + G     L   G A + TGT+ TF     IF 
Sbjct: 138 ISVVNALSTRVETVVRRQGFTWHQSFADGGKPVGELRK-GDATDQTGTQQTFWADGSIFE 196

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------EPREITMF 224
              ++++TL+ R ++++FLN  +QISL D+RS                    + R +   
Sbjct: 197 TTRYDFETLRARFQQMAFLNKGLQISLTDERSDVAETDDEVTGAEDGEGAGAQARTVVYK 256

Query: 225 YKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
           Y  G+  +V++L+  K  + + +  I  +       IS+++AM+W + Y E+V  + N I
Sbjct: 257 YDRGLLDYVAHLNSAKRVEIVHEDIIAFESEDTERRISLEVAMQWTNAYSESVHTYANTI 316

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+A+T  +  Y       K+   ++ GDD REG T+V+SIK+ +P+F 
Sbjct: 317 STTEGGTHEEGFRAAMTSLVNRYARAKGIIKEKDDNLTGDDIREGLTAVISIKLGEPQFE 376

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++E ++ V+S VN+ L  WL+ HP+EAK I++K + AS  R AAR+AR+ TR
Sbjct: 377 GQTKTKLGNTEAKTFVQSVVNEQLGDWLDSHPVEAKDIIRKAIQASQARLAARKAREATR 436

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG+L+   +PGKL DC    P++ E+++VEGDSAGGSA +GR+   QAILP+RGKILNV
Sbjct: 437 RKGLLESGGMPGKLRDCQSNKPEECEVYIVEGDSAGGSAVRGRNPRTQAILPIRGKILNV 496

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           ERAR DK L +QE+  LITA GTGIG+D FDI KLRYHKI++M DADVDG HI TLLLT 
Sbjct: 497 ERARLDKALGNQEVQALITAFGTGIGED-FDIAKLRYHKIVLMADADVDGQHICTLLLTL 555

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSK 579
            FR M  LI +G +Y+ +PPLY I    +   YV  +   ++Y+     + +     +  
Sbjct: 556 LFRYMRPLIEHGMVYLAQPPLYRIKWSNAEHDYVYSDRERDEYIAAGLANGKRIPKDNGI 615

Query: 580 GVISK 584
                
Sbjct: 616 QRYKG 620



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ S+LW+TT++PD R+LL+V + DA+ AD++FS LMG++VE RR FIQ N
Sbjct: 615 IQRYKGLGEMDYSELWDTTMDPDHRTLLQVTLDDAAAADEIFSVLMGEDVESRRNFIQRN 674

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 675 AKDVRFLDI 683


>gi|253733399|ref|ZP_04867564.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728667|gb|EES97396.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 665

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 372/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEYYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|154686223|ref|YP_001421384.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens FZB42]
 gi|154352074|gb|ABS74153.1| ParE [Bacillus amyloliquefaciens FZB42]
          Length = 655

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 268/661 (40%), Positives = 393/661 (59%), Gaps = 23/661 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MARK-QQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEVLAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ D S +V D GRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GDHIIVTIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I+R+G +Y+  F N G     L   G+      T   F P  
Sbjct: 118 HGVGASVVNALSEWLTVTIERDGYVYKQRFENGGKPVTSLEKIGTTKKTG-TLTHFKPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +FS   +N+DTL  RLRE +FL   ++I LID+R+    +   +Y+ GIEAFV+YL+  
Sbjct: 177 SMFSATVYNFDTLSERLRESAFLLKGLKIELIDERNG--VKEVFYYENGIEAFVAYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +  +G   +I +D A ++NDGY EN+L F NN+  KDGGTH SG ++A+TR 
Sbjct: 235 KDALC-EVVSFEGEHHDIEVDFAFQFNDGYSENMLSFVNNVRTKDGGTHESGAKTAMTRA 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS  +
Sbjct: 294 FNEYARKVALLKEKDKNLEGADIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAAD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + +++ L+ +LEE+   A ++VKK + AS  R+AAR+AR+   + +K     A+L GKL 
Sbjct: 354 AVISENLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+P K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+   +  ++EI 
Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I A+G G+G D F+I+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI +G ++
Sbjct: 474 TIIHAIGGGVGAD-FEIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY +++G   + +       +Y  +    + +         I +      ++   
Sbjct: 533 IALPPLYKVSKGSGKKEII------EYAWSDEEMDGVLKKVGKGYTIQRYKGLGEMNADQ 586

Query: 596 KIDKLIKDFYPNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
             +  +        +  I+ A            +  +     +   +A  L+  +   E 
Sbjct: 587 LWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 646

Query: 652 S 652
            
Sbjct: 647 E 647



 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 102/263 (38%), Gaps = 6/263 (2%)

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
                + +       ++               +      S  +          ++   ++
Sbjct: 370 TATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVE 429

Query: 599 KLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
                      +    QAV+     V N E  +  ++    ++   ++ I       +  
Sbjct: 430 GDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFEI 489

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
              N D ++           +      F +      I   ++      +  +     K +
Sbjct: 490 DDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKE 549

Query: 716 I---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           I         +D +     KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++
Sbjct: 550 IIEYAWSDEEMDGVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAAR 609

Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795
            +   + LMGD+VEPRR++I++N
Sbjct: 610 VERRVTTLMGDKVEPRRKWIEKN 632


>gi|313633453|gb|EFS00279.1| DNA topoisomerase IV, B subunit [Listeria seeligeri FSL N1-067]
          Length = 655

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 263/658 (39%), Positives = 387/658 (58%), Gaps = 18/658 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GLDAV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNDYNDDSIQVLEGLDAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDEALAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + + R+G  YE  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTVNRDGAKYEQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               +NY+TL  RLRE +FL   + I LID+R     E +  ++ G++ FV Y++  K  
Sbjct: 178 PTTSYNYETLSERLRESAFLLKGMLIQLIDERVG--MEESFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRVFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   RDAAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREARDAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  
Sbjct: 475 HTVGAGVG-TEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593
           PPLY ++    + + ++Y   +E L+  +        I+ +     + +       ++ D
Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              + ++  D     ++              +  ++          N L       E+
Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRKWIEKHVEFSMEDSQNILENENMMVEE 651



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 109/265 (41%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  +D              ++      S  +          ++   +
Sbjct: 367 ETSSLLVKKAVKAREARDAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            +  N D +V           +      F +      + + ++      +  +     K 
Sbjct: 487 VADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+
Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 606 ARAERRVATLMGDKVEPRRKWIEKH 630


>gi|307331912|ref|ZP_07611008.1| DNA gyrase, B subunit [Streptomyces violaceusniger Tu 4113]
 gi|306882430|gb|EFN13520.1| DNA gyrase, B subunit [Streptomyces violaceusniger Tu 4113]
          Length = 676

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 282/640 (44%), Positives = 396/640 (61%), Gaps = 14/640 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S+ +   SYDA +I +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+A
Sbjct: 25  SEALAPPSYDASAITVLEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHA 83

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLH
Sbjct: 84  DSIEVTILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 143

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS + + +K +G  +   +  G    PL     A  +TGT VTF    D+
Sbjct: 144 GVGVSVVNALSSKVSVEVKTDGYRWTQDYKTGAPTAPLAR-NEATEETGTTVTFWADPDV 202

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY 235
           F   +++++TL  R +E++FLN  + ISL D+R        +P  +  +Y+GGI  FV+Y
Sbjct: 203 FETTEYSFETLARRFQEMAFLNKGLSISLKDEREAHVDEEGKPLSVKYYYEGGIVDFVTY 262

Query: 236 -LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
              R  + +  + I  +       +S+++AM+WN  Y E V  F N I   +GGTH  G 
Sbjct: 263 LNSRKGELVHPTVIGFEAEDKERLLSLEIAMQWNTQYTEGVYSFANTIHTHEGGTHEEGF 322

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK KL ++E 
Sbjct: 323 RAALTYLINKYARDKKLLRERDDNLTGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEA 382

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ V+  VN+ L+ WL+ +P EA  IV+K + A+  R AAR+ARDLTRRKG+L+ ASLPG
Sbjct: 383 KTFVQKVVNEHLADWLDRYPNEAADIVRKGIQAATARVAARKARDLTRRKGLLETASLPG 442

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L + 
Sbjct: 443 KLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARVDKILQNN 502

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E+  LI+A GTG+ +D FDI+KLRYHKII+M DADVDG HI TLLLTF FR M  L+  G
Sbjct: 503 EVQALISAFGTGVHED-FDIDKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAG 561

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +++ +PPLY I  G+        +   D LI    ++   +  DS        L     
Sbjct: 562 HVFLSRPPLYKIKWGRDDFEYAYSDRERDALIQAGRAQGKRIRDDSVQRFKG--LGEMNA 619

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
           + L+I  +  D       T  + A    +F+    +++  
Sbjct: 620 EELRITTMDPDHRVLGQVTLDDAAQADDLFSVLMGEDVEA 659



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +   GR      +  S+QR+KGLGEMNA +L  TT++PD R L +V + DA+QADDLF
Sbjct: 590 DALIQAGRAQGKRIRDDSVQRFKGLGEMNAEELRITTMDPDHRVLGQVTLDDAAQADDLF 649

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 650 SVLMGEDVEARRSFIQRNAKDVRFLDI 676


>gi|119963753|ref|YP_945839.1| DNA gyrase subunit B [Arthrobacter aurescens TC1]
 gi|119950612|gb|ABM09523.1| DNA gyrase, B subunit [Arthrobacter aurescens TC1]
          Length = 692

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 268/603 (44%), Positives = 374/603 (62%), Gaps = 30/603 (4%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A  I +L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY   I VTL
Sbjct: 30  EYGASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCSHIEVTL 88

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V D+GRGIP D+H  EG    EV+MT LHAGGKF    Y VSGGLHGVG+SVV
Sbjct: 89  RADGGVRVVDDGRGIPVDIHPTEGKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVV 148

Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           NALS  +   ++R+G+++ M+F + G     L V G A + TGT  TF P   IF   +F
Sbjct: 149 NALSRRVDTEVRRQGHVWRMTFADGGKPQGEL-VKGEATDVTGTSQTFYPDGTIFESTEF 207

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSP---------------------EPREITMFYK 226
           +++TL+ R ++++FLN  ++I+L D+R                       E R +   Y 
Sbjct: 208 DFETLRARFQQMAFLNKGLRITLTDERPVNRDGDDDLDLDAVATEGEVAAEHRTVVYQYP 267

Query: 227 GGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
            G+  +V +L+  KK     +  I  +      +I++++AM+W   Y E+V  + N I  
Sbjct: 268 DGLLDYVKHLNSSKKVEIVHEDVIAFETEDTERHIAVEVAMQWTTAYSESVHTYANTINT 327

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+A+T  I  Y  +    K+ + ++ GDD REG T+V+S+K+ +P+F  Q
Sbjct: 328 HEGGTHEEGFRAAMTSLINRYAREKSIIKEKEDNLTGDDIREGLTAVISVKLSEPQFEGQ 387

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEV+  V+  V D L  WLE +P  A+ +++K + A+  R AAR+ARD  RRK
Sbjct: 388 TKTKLGNSEVKGFVQRVVTDQLGDWLERNPGPARDVIRKAISAAQARMAARKARDNARRK 447

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+   +PGKL+DCS +DP + E++LVEGDSAGGSAK+GR+ E QAILPLRGKILNVER
Sbjct: 448 SPLESFGMPGKLSDCSSKDPSRCEVYLVEGDSAGGSAKRGRNPETQAILPLRGKILNVER 507

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR DK L + E+ ++ITA GTGIG+D FDI KLRYHKI++M DADVDG HI TLL+T  F
Sbjct: 508 ARLDKALGNAEVQSMITAFGTGIGED-FDIAKLRYHKIVLMADADVDGQHITTLLMTLLF 566

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           R M  LI NG++Y+ +PPLY I    +   YV  +   ++ +   +   +     +    
Sbjct: 567 RYMRPLIENGYVYLAQPPLYRIKWSNAAHDYVYSDRERDETIRKGAAMNKRLPKDNGIQR 626

Query: 582 ISK 584
              
Sbjct: 627 YKG 629



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LW+TT++PD R+LL+V + DA  AD  FS LMG++VE RR FIQ+N
Sbjct: 624 IQRYKGLGEMDYTELWDTTMDPDRRTLLQVTMDDALAADQTFSVLMGEDVESRRNFIQQN 683

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 684 AKDVRFLDI 692


>gi|323339872|ref|ZP_08080141.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus ruminis
           ATCC 25644]
 gi|323092745|gb|EFZ35348.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus ruminis
           ATCC 25644]
          Length = 678

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 261/597 (43%), Positives = 361/597 (60%), Gaps = 15/597 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y  DSIQ+LKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+   I
Sbjct: 1   MGTENYSDDSIQVLKGLEAVRKRPGMYIGSTDA-KGLHHLVYEIVDNAVDEALSGFGKEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S TV DNGRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 60  DVTIHKDDSITVVDNGRGLPVGIHA-MGIPTVEVIYTVLHAGGKFGQGGYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS  L +   R+G  YE  F++ G     L   G     +GT VTF P   IFS
Sbjct: 119 ASVVNALSEKLTVNTVRDGIEYEEDFVDGGHPVGTLRKIGKTKKQSGTTVTFKPDKKIFS 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FNYDTL  RLRE +FL   V+I L D+R+ +  +    ++ GI+ FVS     +K  
Sbjct: 179 TTHFNYDTLAERLRESAFLLKGVKIVLTDERNDD--QDVFLFENGIQEFVS-YLNEEKDT 235

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           + + +  +G +D I +++A ++NDGY E ++ F NN+  KDGGTH  G++SA T+    Y
Sbjct: 236 LGNVMYFEGKKDGIEVEVAAQYNDGYSETIMSFVNNVRTKDGGTHEVGMKSAWTKAFNEY 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K   +++ G D REG   V+S+++P+   +F  QTK KL + E R+ V+  VN
Sbjct: 296 ARKVDLIKSKDKNLEGSDVREGLACVVSVRIPEELLQFEGQTKGKLGTPEARTAVDGIVN 355

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           + L  +L E+   AK +V+K L A   R+AAR+ARD     +K       L GKL     
Sbjct: 356 EQLGYYLMENGDFAKELVRKSLKAREAREAARKARDESRNGKKRHKKERLLSGKLTPAQS 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   ++ ++EI T+I 
Sbjct: 416 KNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTMIY 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F+I    Y KIIIMTDAD DGAHI+TLLLTFF++ M  +I+ G +YI  P
Sbjct: 476 TIGAGVG-TEFNIEDANYDKIIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALP 534

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PLY +     +   ++Y   +  L+           ++ F     + +       ++
Sbjct: 535 PLYKLQKTVKKKTVVKYAWTDAELKTSEKEIGKGFTLQRFKGLGEMNADQLWETTMN 591



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++                 +    S  +          ++   ++     
Sbjct: 373 VRKSLKAREAREAARKARDESRNGKKRHKKERLLSGKLTPAQSKNAKKNELFLVEGDSAG 432

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       ++    N 
Sbjct: 433 GSAKQGRDRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTMIYTIGAGVGTEFNIEDANY 492

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG-- 718
           D ++           +      F +      I + R+      +  L     K  +    
Sbjct: 493 DKIIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKLQKTVKKKTVVKYA 552

Query: 719 PCSL-LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L T      KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI D + A+   
Sbjct: 553 WTDAELKTSEKEIGKGFTLQRFKGLGEMNADQLWETTMNPETRTLVRVKIEDDALAEKRV 612

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD VEPRR++I++N
Sbjct: 613 STLMGDRVEPRRKWIEKN 630


>gi|325677512|ref|ZP_08157176.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rhodococcus equi
           ATCC 33707]
 gi|111185878|dbj|BAF02676.1| DNA gyrase subunit B [Rhodococcus equi]
 gi|325551759|gb|EGD21457.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rhodococcus equi
           ATCC 33707]
          Length = 678

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 257/582 (44%), Positives = 362/582 (62%), Gaps = 39/582 (6%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+   + ++++Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ 
Sbjct: 1   MAAQKSDKSNTYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GYA  + VT+  DG   V D+GRGIP  +H   G    EV+MT+LHAGGKF+  +Y VSG
Sbjct: 60  GYASKVEVTMLEDGGIQVVDDGRGIPVAMHAS-GAPTVEVVMTQLHAGGKFDSDAYAVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG+SVVNALS+ +++ I  +G  +  ++ +     PL V G    +TGT V F   
Sbjct: 119 GLHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKP-GPL-VQGEPTTETGTTVRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---------------- 222
            +IF    +N++T+  RL+E++FLN  + I+L D+R  E                     
Sbjct: 177 PEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTDDVVPVTAEAPKTATET 236

Query: 223 ----------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                             Y GG+E +V +++R K+ +  S +          +++AM+WN
Sbjct: 237 EEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGHELEIAMQWN 296

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K     + GDD REG 
Sbjct: 297 SGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELTGDDIREGL 356

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +++S+K+ +P+F  QTK KL ++EV+S V+   N+ ++ W E +P +AK IV K + ++
Sbjct: 357 AAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTIVTKAVSSA 416

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR   
Sbjct: 417 QARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAKSGRDSM 476

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI++M DA
Sbjct: 477 YQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKLRYHKIVLMADA 535

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
           DVDG HI TLLLT  FR M  L+  G +Y+ +PPLY +   K
Sbjct: 536 DVDGQHIATLLLTLLFRFMRPLVEQGHVYLAQPPLYKLKWQK 577



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G+K I+    +QRYKGLGEMNA +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 593 LLEAGLAAGKK-INKDDGIQRYKGLGEMNAKELWETTMDPSVRVLRQVTLDDAAAADELF 651

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 652 SVLMGEDVEARRSFITRNAKDVRFLDV 678


>gi|317509459|ref|ZP_07967077.1| DNA gyrase, subunit B [Segniliparus rugosus ATCC BAA-974]
 gi|316252288|gb|EFV11740.1| DNA gyrase, subunit B [Segniliparus rugosus ATCC BAA-974]
          Length = 678

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 268/605 (44%), Positives = 372/605 (61%), Gaps = 33/605 (5%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N + S+Y A SI IL+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ GYA 
Sbjct: 10  KNAEKSTYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGYAT 68

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + VTL  DG   V D+GRGIP   H   G    EV++T LHAGGKF+  SY VSGGLHG
Sbjct: 69  RVDVTLLADGGIEVVDDGRGIPVAPHAS-GPPTVEVVLTVLHAGGKFDSDSYAVSGGLHG 127

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS  L++ I  +G+ +  ++ N     PL V G+A   TGT V F     IF
Sbjct: 128 VGISVVNALSYKLEVEIDVDGHHWTQAYDNAKP-GPL-VKGAAVKRTGTTVRFWADPKIF 185

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----------------------- 219
               +++DT+  RL+E++FLN  + I+L D R  +                         
Sbjct: 186 ETTRYDFDTIARRLQEMAFLNKGLIITLTDLREGQIDASDEGEGVDTAELVRSEGDDEAK 245

Query: 220 -----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                     Y GG+  +V++++R K  +  S +  +G  +   +++AM+WN GY E+V 
Sbjct: 246 APAVKRREYHYPGGLHDYVAHINRTKTAIHTSIVSFEGKGEGHEVEIAMQWNSGYTESVY 305

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N I   +GGTH  G R+ALT  +  Y       K+  +++ GDD REG ++V+S+K+
Sbjct: 306 TFANTINTHEGGTHEEGFRAALTSTVNKYARDKKILKEKDKNLSGDDVREGLSAVISVKL 365

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL ++E+RS V+   N+ L+ W E +P EAK+IV K   A+  RDAA+ 
Sbjct: 366 SEPQFEGQTKTKLGNTEIRSFVQKICNEELAHWFEANPSEAKVIVSKAQQAAQARDAAQN 425

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR+ E QAILP+R
Sbjct: 426 ARALVRRKSATDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGSAKSGRNSEFQAILPIR 485

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++M DADVDG HI 
Sbjct: 486 GKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHKIVLMADADVDGQHIS 544

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           TLLLT  FR M  L+ +G +Y+  PPLY +   ++       +   D L++  L    ++
Sbjct: 545 TLLLTLLFRFMRPLVEHGHVYLAAPPLYKLKWQRAEPEYAYSDRERDSLLSIGLGSGKKI 604

Query: 575 FCDSK 579
             D  
Sbjct: 605 NKDDG 609



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA +LWETT++PDTR+L  V + DA+ AD+LFS LMG++V  RR FI  N
Sbjct: 610 IQRYKGLGEMNAKELWETTMDPDTRTLRLVTMDDAAAADELFSILMGEDVPARRGFIARN 669

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 670 AKDVRFLDV 678


>gi|300811991|ref|ZP_07092447.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497017|gb|EFK32083.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 653

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 283/612 (46%), Positives = 403/612 (65%), Gaps = 7/612 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A  I 
Sbjct: 17  EADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATKIE 75

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+N D S TV D+GRGIP D+ K+ G  A E + T LHAGGKF    YKVSGGLHGVG 
Sbjct: 76  VTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGVGA 135

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSV 184
           SVVNALS+ L + + R+G  Y ++F +G +   L   G+    + GT V F P  +IF+ 
Sbjct: 136 SVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIFTE 195

Query: 185 QDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
                D  L++R+REL+FLN  ++++  DKR          ++GGI+ +VS+L+R ++ L
Sbjct: 196 TTVFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYHFEGGIKEYVSFLNRGQEVL 255

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
              PI ++G  + I +++++++  GY   ++ F NNI   +GG H +G ++ALTR +  Y
Sbjct: 256 FDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVNDY 315

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +S+ R+ V+   ++ 
Sbjct: 316 AHKAKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKLGNSDARTAVDRAFSET 375

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S +L E+P  A+ IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  DP 
Sbjct: 376 FSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSNDPN 435

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI TL+TALGT
Sbjct: 436 ISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLVTALGT 495

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPLY 
Sbjct: 496 GFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPLYQ 554

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           + +GK ++Y+  +E L DYL +   S + I       G +    L     D    ++ + 
Sbjct: 555 VRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLWETTMDPE--NRRLD 612

Query: 603 DFYPNHDKTFIE 614
              P + K   E
Sbjct: 613 RVDPGYAKDADE 624



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT++P+ R L RV    A  AD++F  LMG+EV PRR+FI++N
Sbjct: 585 VQRYKGLGEMDAEQLWETTMDPENRRLDRVDPGYAKDADEVFEMLMGNEVGPRRKFIEDN 644

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 645 AQYVENLD 652


>gi|258424795|ref|ZP_05687669.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9635]
 gi|282916615|ref|ZP_06324373.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770421|ref|ZP_06343313.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           H19]
 gi|257844959|gb|EEV68999.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9635]
 gi|282319102|gb|EFB49454.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460568|gb|EFC07658.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           H19]
          Length = 665

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 371/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NPDTR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPDTRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|258449316|ref|ZP_05697419.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6224]
 gi|257857304|gb|EEV80202.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6224]
          Length = 665

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 265/598 (44%), Positives = 373/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+G+IY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L+ RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLRERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|227494193|ref|ZP_03924509.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831927|gb|EEH64310.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 671

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 280/658 (42%), Positives = 380/658 (57%), Gaps = 32/658 (4%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++        SSY A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DNA+DE+
Sbjct: 1   MAEEQTAGTDTSSYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L GY D I VT+  DG+ TV DNGRGIP D+H  EG    EV+MT LHAGGKF    Y V
Sbjct: 60  LAGYCDHIEVTIREDGAVTVVDNGRGIPVDIHPTEGKPTVEVVMTILHAGGKFGGGGYAV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTF 175
           SGGLHGVG+SVVNALS  +   I+R+G ++  SF N G     L V G    +TGT  TF
Sbjct: 120 SGGLHGVGISVVNALSKRVDTEIRRQGYVWRQSFGNGGKPLTEL-VRGEETEETGTSQTF 178

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------SP 216
            P  +IF   +F+++TL+ R ++++FLN  ++ISL D+R                     
Sbjct: 179 YPDPEIFETVEFSFETLRKRFQQMAFLNKGLRISLTDERATAVDDGDEIAGEDTDENAVK 238

Query: 217 EPREITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
            P  +T  Y  G+  +V +++  K  + +    I  +   + +S+++AM+W   Y E+V 
Sbjct: 239 VPLTVTYQYDQGLYDYVKFINSTKKSETIHDDIIAFEHDAEALSVEIAMQWTKAYSESVF 298

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + N I   +GGTH  G R+ALT  I  Y  +    K    ++ GDD REG T+V+S+K+
Sbjct: 299 TYANTISTTEGGTHEEGFRAALTSVINKYAREKGILKDKHDNLSGDDIREGLTAVISVKL 358

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL ++E R+ V+  V      WL+ HP EAK ++ K L A   R AAR+
Sbjct: 359 TEPQFEGQTKTKLGNTEARTFVQQQVYSQFGDWLDSHPAEAKAVIIKALSAQEARLAARK 418

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+ TRRKGVL+ AS+PGKL DCS RD  K E+++VEGDSAGGSA  GR  E+QAILPLR
Sbjct: 419 AREATRRKGVLESASMPGKLRDCSSRDAAKCEIYIVEGDSAGGSAVMGRDPEHQAILPLR 478

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+AR D+ L SQEI  LI+A GTGIG D FDI+KLRY KI++M DADVDG HI 
Sbjct: 479 GKILNVEKARLDRALDSQEIRALISAFGTGIG-DEFDISKLRYGKIVLMADADVDGQHIT 537

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIE 573
           TLL+T  FR M  ++  G +Y+ +PPLY +       ++V  +   +  L          
Sbjct: 538 TLLMTLLFRYMRPIVEAGHVYLAQPPLYRLKWTNAQHEFVYSDAERDAALAKGKAEGRRL 597

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                          N  +         K           E A    +F+     ++ 
Sbjct: 598 PKEGGVQRYKGLGEMNAQELWETTMDPSKRTLKKI--EIAEAATADEIFSILMGDDVE 653



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 61/88 (69%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           + L    + GR+    G  +QRYKGLGEMNA +LWETT++P  R+L +++I +A+ AD++
Sbjct: 585 AALAKGKAEGRRLPKEG-GVQRYKGLGEMNAQELWETTMDPSKRTLKKIEIAEAATADEI 643

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+VE RR FIQ N+     LD+
Sbjct: 644 FSILMGDDVESRRSFIQRNAQDVRFLDV 671


>gi|70704828|gb|AAZ06861.1| DNA gyrase subunit B [Acholeplasma morum]
          Length = 535

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 263/531 (49%), Positives = 364/531 (68%), Gaps = 4/531 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           GE GLHH+++E++DN+IDES+ GYA  IT+ +  D    V+D+GRGIP D H + G SA 
Sbjct: 1   GERGLHHLVWEIVDNSIDESMVGYASEITLEILPDNIIKVTDDGRGIPVDKHAKTGKSAV 60

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E I+T LHAGGKF+ KSYKVSGGLHGVG SVVNALSSW ++ I R G +Y+  +  GI  
Sbjct: 61  ETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTISRNGLLYQQEYSRGIPQ 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L   G + + TGT + F   S+IF+    F+++TL++R++EL+FLN  ++IS+ D R 
Sbjct: 121 YELKEIGKSSH-TGTTIEFKADSEIFTEAQVFDFETLRNRIQELAFLNRHIKISITDSRG 179

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            EP   T  Y+GGIE +V +L+  K  +    +      DNI++++A+++ND Y  N+  
Sbjct: 180 KEPVSFTYQYEGGIEEYVKFLNHGKSVINPQIVYSFKEVDNITVEIALQYNDSYATNIYS 239

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNI   +GG H  G + AL+R + +Y + +    K   + IG+D REG T+++SIK P
Sbjct: 240 FTNNIHTHEGGMHEDGFKLALSRVLGNYAKDN-SLLKKDEAFIGEDTREGLTAIVSIKHP 298

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL + EVR +V     +GL  +L E+P  AK I+ KV+ AS  R AAR+A
Sbjct: 299 NPQFEGQTKTKLGNPEVRQIVSQAAGEGLERYLLENPAAAKSIIDKVILASRARIAARKA 358

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++ TRRK  LD      KLADC  + P++SE+++VEGDSAGGSAKQGR    QAILPLRG
Sbjct: 359 KEATRRKSPLDALGFASKLADCRNKKPEESEIYIVEGDSAGGSAKQGRDSAFQAILPLRG 418

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNVE+AR D++LS++EI ++I A GTGIG+D FD++K RYHKI+IMTDADVDGAHIRT
Sbjct: 419 KVLNVEKARLDRILSNKEILSMIQAFGTGIGED-FDVSKARYHKIVIMTDADVDGAHIRT 477

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           L+LTF +R M  LI  G++Y+ +PPLY +  GK ++Y+ DEE L   L   
Sbjct: 478 LMLTFLYRYMKPLIDLGYVYVAQPPLYKVQSGKRVEYIYDEERLRVVLEQM 528


>gi|289434570|ref|YP_003464442.1| DNA topoisomerase IV, B subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170814|emb|CBH27356.1| DNA topoisomerase IV, B subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 655

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 262/658 (39%), Positives = 387/658 (58%), Gaps = 18/658 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GLDAV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNDYNDDSIQVLEGLDAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDEALAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + + R+G  YE  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTVNRDGAKYEQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               +NY+TL  RLRE +FL   + I LID+R     E +  ++ G++ FV Y++  K  
Sbjct: 178 PTTSYNYETLSERLRESAFLLKGMLIQLIDERVG--MEESFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  
Sbjct: 475 HTVGAGVG-TEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593
           PPLY ++    + + ++Y   +E L+  +        I+ +     + +       ++ D
Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              + ++  D     ++              +  ++          N L       E+
Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRKWIEKHVEFSMEDSQNILENENMMVEE 651



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  ++              ++      S  +          ++   +
Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            +  N D +V           +      F +      + + ++      +  +     K 
Sbjct: 487 VADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+
Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 606 ARAERRVATLMGDKVEPRRKWIEKH 630


>gi|15924344|ref|NP_371878.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926934|ref|NP_374467.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267843|ref|YP_001246786.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           JH9]
 gi|156979673|ref|YP_001441932.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317051|ref|ZP_04840264.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006142|ref|ZP_05144743.2| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795590|ref|ZP_05644569.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9781]
 gi|258413400|ref|ZP_05681676.1| topoisomerase IV subunit B [Staphylococcus aureus A9763]
 gi|258420494|ref|ZP_05683436.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9719]
 gi|258434734|ref|ZP_05688808.1| topoisomerase IV subunit B [Staphylococcus aureus A9299]
 gi|258444690|ref|ZP_05693019.1| topoisomerase IV subunit B [Staphylococcus aureus A8115]
 gi|258447475|ref|ZP_05695619.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6300]
 gi|258454696|ref|ZP_05702660.1| topoisomerase IV subunit B [Staphylococcus aureus A5937]
 gi|269202977|ref|YP_003282246.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892845|ref|ZP_06301080.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A8117]
 gi|282928913|ref|ZP_06336502.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A10102]
 gi|296275475|ref|ZP_06857982.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MR1]
 gi|13701151|dbj|BAB42446.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247125|dbj|BAB57516.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740912|gb|ABQ49210.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           JH9]
 gi|156721808|dbj|BAF78225.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257789562|gb|EEV27902.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9781]
 gi|257839964|gb|EEV64432.1| topoisomerase IV subunit B [Staphylococcus aureus A9763]
 gi|257843442|gb|EEV67849.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9719]
 gi|257849095|gb|EEV73077.1| topoisomerase IV subunit B [Staphylococcus aureus A9299]
 gi|257850183|gb|EEV74136.1| topoisomerase IV subunit B [Staphylococcus aureus A8115]
 gi|257853666|gb|EEV76625.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6300]
 gi|257863079|gb|EEV85843.1| topoisomerase IV subunit B [Staphylococcus aureus A5937]
 gi|262075267|gb|ACY11240.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589422|gb|EFB94512.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A10102]
 gi|282764842|gb|EFC04967.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A8117]
 gi|315131157|gb|EFT87141.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727072|gb|EGG63528.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 665

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 265/598 (44%), Positives = 372/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+G+IY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|49483547|ref|YP_040771.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49241676|emb|CAG40364.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 665

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 371/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|257425420|ref|ZP_05601845.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428080|ref|ZP_05604478.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430711|ref|ZP_05607093.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433471|ref|ZP_05609829.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436312|ref|ZP_05612359.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903934|ref|ZP_06311822.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905699|ref|ZP_06313554.1| DNA topoisomerase IV B subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908667|ref|ZP_06316488.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910936|ref|ZP_06318739.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914143|ref|ZP_06321930.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919065|ref|ZP_06326800.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924248|ref|ZP_06331922.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|293501171|ref|ZP_06667022.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510132|ref|ZP_06668840.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526723|ref|ZP_06671408.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591171|ref|ZP_06949809.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus MN8]
 gi|257271877|gb|EEV04015.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274921|gb|EEV06408.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278839|gb|EEV09458.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281564|gb|EEV11701.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284594|gb|EEV14714.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313635|gb|EFB44028.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316875|gb|EFB47249.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322211|gb|EFB52535.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325541|gb|EFB55850.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327485|gb|EFB57777.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330991|gb|EFB60505.1| DNA topoisomerase IV B subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595552|gb|EFC00516.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|290920795|gb|EFD97858.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096176|gb|EFE26437.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467076|gb|EFF09594.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|297576057|gb|EFH94773.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus MN8]
 gi|302332970|gb|ADL23163.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, ParE [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312438246|gb|ADQ77317.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 665

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 371/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|71903198|ref|YP_280001.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS6180]
 gi|71802293|gb|AAX71646.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS6180]
          Length = 650

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y+ L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTQFDYNVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMT ADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTIADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++     +   D       + E      SK  + +      +DD    +  + 
Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 604 PENRLMARVTVDDAAEA 620



 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634

Query: 788 RREFIQENSLPSALDI 803
           RR FI+EN++ S LDI
Sbjct: 635 RRNFIEENAVYSTLDI 650


>gi|88195079|ref|YP_499879.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221479|ref|YP_001332301.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509519|ref|YP_001575178.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848358|ref|ZP_06789105.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
 gi|59799890|sp|P0A0K9|PARE_STAAW RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|84029386|sp|Q5HG65|PARE_STAAC RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|112823997|sp|Q2FYS5|PARE_STAA8 RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|112823998|sp|P0C1S7|PARE_STAAU RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|561879|gb|AAA53115.1| gyrase-like protein beta subunit [Staphylococcus aureus]
 gi|1777320|dbj|BAA11086.1| DNA topoisomerase IV GrlB subunit [Staphylococcus aureus]
 gi|87202637|gb|ABD30447.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374279|dbj|BAF67539.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368328|gb|ABX29299.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294825158|gb|EFG41580.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
 gi|320140314|gb|EFW32172.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 663

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 264/594 (44%), Positives = 369/594 (62%), Gaps = 14/594 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY + I
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
            SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  K+ L
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    Y
Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+S V 
Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL     
Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I 
Sbjct: 419 KNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  P
Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 616 TTLMGDKVQPRREWIEKH 633


>gi|224476482|ref|YP_002634088.1| DNA topoisomerase IV subunit B [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421089|emb|CAL27903.1| topoisomerase IV subunit B [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 666

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 267/671 (39%), Positives = 383/671 (57%), Gaps = 21/671 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N +  +Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L G+
Sbjct: 1   MATN-KRQNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N D S TV DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIKVTINKDDSITVEDNGRGMPTGIH-KSGKPTVEVIFTILHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + I R+G IYE  F   G+    L   G       T+VTF P+ 
Sbjct: 118 HGVGASVVNALSEWLDVEIYRDGYIYEQKFNKGGLPATGLEKKGKTRKKG-TKVTFKPNP 176

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     FN+DTL  RL+E +FL   ++I+L D RS + RE    Y+ GI+ FVSY++ 
Sbjct: 177 EIFKSTTAFNFDTLSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G    I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 GKEVLH-DVSTFSGESHGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL ++E RS V
Sbjct: 296 VFNDYARRIGELKAKDKNLEGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTAEARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S + + L  +LEE    +K +VKK + A   R+AAR+AR+   T +K       L GKL
Sbjct: 356 DSVITEKLPYYLEEKGQLSKSLVKKAVKAQQAREAARKAREDARTGKKNKRKDTLLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++ +K EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR D +  ++EI
Sbjct: 416 TPAQSKNTEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G + F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G +
Sbjct: 476 NTIIHTIGAGVGNE-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           +I  PPLY +     + K ++Y   +E LE           ++ +     +         
Sbjct: 535 FIALPPLYKLEKGKGKSKKVEYAWTDEELEKLQKKLGKGFSLQRYKGLGEMNPDQLWETT 594

Query: 591 IDDALKIDKLIK-----DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
           ++   +    ++                ++      +     +       S L N    I
Sbjct: 595 MNPETRTLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIERHVEFGLQEDQSILENDEIQI 654

Query: 646 AEKSEKSWHGS 656
            ++ E      
Sbjct: 655 LDQDEYGEEEE 665



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     ++  ++  L        SKN 
Sbjct: 364 PYYLEEKGQLSKSLVKKAVKAQQAREAARKAREDARTGKKNKRKDTLLSGKLTPAQSKN- 422

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                 +   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 423 --TEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKNEEINTIIH 480

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 481 TIGAGVGNEFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 540

Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L        K++       L+ +     KG S+QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 541 LYKLEKGKGKSKKVEYAWTDEELEKLQKKLGKGFSLQRYKGLGEMNPDQLWETTMNPETR 600

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV++ D  ++    + LMGD+V PRRE+I+ +
Sbjct: 601 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIERH 635


>gi|19745973|ref|NP_607109.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS8232]
 gi|19748134|gb|AAL97608.1| putative DNA topoisomerase IV (subunit B) [Streptococcus pyogenes
           MGAS8232]
          Length = 650

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +VES
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 6/261 (2%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
            N D ++           +      F +      + +  +      +  +     K +  
Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKV 558

Query: 718 GPC---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                   L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+
Sbjct: 559 SYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAE 618

Query: 775 DLFSRLMGDEVEPRREFIQEN 795
              S LMGD+  PRR++I++N
Sbjct: 619 RRVSVLMGDKAAPRRQWIEDN 639


>gi|71903356|ref|YP_280159.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS6180]
 gi|71802451|gb|AAX71804.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS6180]
          Length = 650

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/647 (42%), Positives = 398/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G++Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +VES
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 6/261 (2%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
            N D ++           +      F +      + +  +      +  +     K +  
Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKV 558

Query: 718 GPC---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                   L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+
Sbjct: 559 SYAWTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAE 618

Query: 775 DLFSRLMGDEVEPRREFIQEN 795
              S LMGD+  PRR++I++N
Sbjct: 619 RRVSVLMGDKAAPRRQWIEDN 639


>gi|158311873|ref|YP_001504381.1| DNA gyrase subunit B [Frankia sp. EAN1pec]
 gi|158107278|gb|ABW09475.1| DNA gyrase, B subunit [Frankia sp. EAN1pec]
          Length = 652

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 280/591 (47%), Positives = 370/591 (62%), Gaps = 18/591 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YDA SI++L+GL+AV+KRP MYIG T GE GLHH++YEV+DNA+DE+L GY D I+VTL
Sbjct: 2   AYDASSIKVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEALAGYCDTISVTL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ +SY VSGGLHGVGVSVV
Sbjct: 61  LADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L + I+ +G+ +   + N     PL  T      TGT +TF     IF    + 
Sbjct: 121 NALSTRLDVEIQTDGHSWFQPYENSRPARPLAQT-GTSKKTGTTITFWADPTIFETTTYK 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSP--------EPREITMFYKGGIEAFVSYLDRHK 240
           Y+TL  RL+E++FLN  + I+L D+R          EP E+T  Y  G+  FV +L+  K
Sbjct: 180 YETLFRRLQEMAFLNKGLSITLRDERGKATETEEAAEPTEVTFKYDNGLVDFVGHLNATK 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + +S I ++     I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT  +
Sbjct: 240 DAVHRSVISLESKGTGIEAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAV 299

Query: 301 TSYVEKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            +Y +     K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +
Sbjct: 300 NAYAKDQNLLKPVKAGSKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAK 359

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             V+      L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGK
Sbjct: 360 KFVQEMCYSALKDWFEVNRTEARSIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC   DP++ EL++VEGDSAGGSAK GR  + QAILPLRGKILNVE+AR D++L + E
Sbjct: 420 LADCQFTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTE 479

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +  LI ALG GI  D FDI KLRYHKI++M DADVDG HIRTLLLT  FR M  L+  G 
Sbjct: 480 VQALIQALGCGI-HDDFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGH 538

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           +++ +PPLY I  G+        +   D L+ Q +    +L  D+      
Sbjct: 539 VFLAQPPLYKIKWGREDWEYAYSDRERDGLLEQGVEAGRKLPKDAIQRFKG 589



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 3/85 (3%)

Query: 722 LLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           LL+     GRK    ++QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS 
Sbjct: 568 LLEQGVEAGRKLPKDAIQRFKGLGEMNATELWDTTMDPDKRILLQVTLDDAAVADELFSV 627

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
           LMG++V+ RR FIQ N+     LDI
Sbjct: 628 LMGEDVDARRSFIQRNAKDVRFLDI 652


>gi|295425411|ref|ZP_06818109.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064913|gb|EFG55823.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           amylolyticus DSM 11664]
          Length = 653

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 280/640 (43%), Positives = 405/640 (63%), Gaps = 7/640 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN+IDE L G+A  
Sbjct: 15  EKEADKYNASQIQVLGGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIIDNSIDERLAGFATK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 74  IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y + F +G + + +   G+   +  GT V F P  DIF
Sbjct: 134 GASVVNALSTKLDVTVVRDGKKYFIDFDHGRVKDEMKQIGTVPLDQHGTTVHFYPDPDIF 193

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                F+   L++R+REL+FLN  ++++  DKR          Y+GGI+ +V++L+R  +
Sbjct: 194 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYLYEGGIKEYVAFLNRDTE 253

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G  D I++++A+++ +GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 254 VLFDDPIYVEGDYDGINVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 313

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+V+S+K P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 314 DYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTKLGNSDARTAVDKAFS 373

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 374 ETFSRFLMENPSVGRKIVEKAQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 433

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEG+SAGGSAKQ RSR  QAILP+RGKILNVE+A  D++L++QEI +L TAL
Sbjct: 434 PSISELFIVEGNSAGGSAKQARSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 493

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M  +I  G++YI +PPL
Sbjct: 494 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 552

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK ++Y+  +E L DYL +   S + I       G +    L +        ++ 
Sbjct: 553 YQVRQGKVVKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDPEQLWDT--TMNPENRR 610

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           +    P + K   E   +         ++   + A  + N
Sbjct: 611 LDRVSPEYAKDADEVFDLLMGNEVAPRRKFIETNAKYVEN 650



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 122/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 286 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 345

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            P+    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 346 HPNPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKAQLAERARTAAK 405

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 406 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQARSRLTQAILPI 465

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 466 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 525

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +        +     L D +       K I 
Sbjct: 526 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPI- 584

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLW+TT+NP+ R L RV    A  AD++F  LMG+EV PRR+FI+ N
Sbjct: 585 VQRYKGLGEMDPEQLWDTTMNPENRRLDRVSPEYAKDADEVFDLLMGNEVAPRRKFIETN 644

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 645 AKYVENLD 652


>gi|329733638|gb|EGG69966.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 665

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 265/601 (44%), Positives = 375/601 (62%), Gaps = 14/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIDDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY +     + K ++Y   +E L            ++ +     +  K      +
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPKQLWETTM 595

Query: 592 D 592
           +
Sbjct: 596 N 596



 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPKQLWETTMNPETRTLIRVQVDDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|116872719|ref|YP_849500.1| DNA topoisomerase IV subunit B [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741597|emb|CAK20721.1| DNA topoisomerase IV, B subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 655

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 260/658 (39%), Positives = 386/658 (58%), Gaps = 18/658 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPTIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNY+TL  RLRE +FL   + I L+D+R       +  ++ G++ FV Y++  K  
Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIQLVDERVG--MAESFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  
Sbjct: 475 HTVGAGVG-TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593
           PPLY ++    + + ++Y   +E L+  +        I+ +     + +       ++ D
Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              + ++  D     ++              +  ++          N L       E+
Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDNQNILENENMMVEE 651



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  ++              ++      S  +          ++   +
Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
               N D +V           +      F +      + + ++      +  +     K 
Sbjct: 487 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+
Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 606 ARAERRVATLMGDKVEPRRQWIEKH 630


>gi|295837751|ref|ZP_06824684.1| DNA gyrase subunit B [Streptomyces sp. SPB74]
 gi|197699827|gb|EDY46760.1| DNA gyrase subunit B [Streptomyces sp. SPB74]
          Length = 682

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 286/653 (43%), Positives = 393/653 (60%), Gaps = 27/653 (4%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +     +SYDA++I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+A
Sbjct: 18  TSGSAETSYDANAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHA 76

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLH
Sbjct: 77  DTIDVTILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 136

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+ +++ +K +G+I+   +  G    PL   G A  + GT VTF    D+
Sbjct: 137 GVGVSVVNALSTRVEVEVKTDGHIWTQQYERGAPTAPLHQ-GEATEEHGTSVTFWADGDV 195

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREIT 222
           F   +++++TL  R +E++FLN  + I L D+R                    PE R +T
Sbjct: 196 FETTEYSFETLARRFQEMAFLNKGLTIKLTDERESAKATVGADSAEVVDAEEPPEARTVT 255

Query: 223 MFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNN 279
             Y+GGI  FV Y   R  + +  S I ++       +S+++AM+WN GY E V  F N 
Sbjct: 256 YHYEGGIVDFVKYLNSRKGEVIHPSVIDVEAEDKEKLLSVEVAMQWNAGYTEGVYSFANT 315

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R ALT  +  Y       ++   ++ GDD REG T+++S+K+ +P+F
Sbjct: 316 IHTHEGGTHEEGFRGALTTIVNKYARDKKLLREKDGNLTGDDIREGLTAIISVKLGEPQF 375

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++E R+ V+  V + L+ W + +P EA  I++K + A+  R AAR+ARDLT
Sbjct: 376 EGQTKTKLGNTEARTFVQKIVYERLADWFDRNPNEASDIIRKGISAATARVAARKARDLT 435

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR    QAILP+RGKILN
Sbjct: 436 RRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILN 495

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR DK+L +QEI  LI+A G G+ +D FDI KLRYHKII+M DADVDG HI TLLLT
Sbjct: 496 VEKARVDKILHNQEIQALISAFGAGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLT 554

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           F FR M  L+ +G +Y+ +PPLY I  GK        +   D LI         L   + 
Sbjct: 555 FLFRFMRPLVESGHVYLSRPPLYKIKWGKDDVDYAYSDRERDALIALGRENGKRLREGAV 614

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                  L     + L++  + +D       T  + A    +F+    +++  
Sbjct: 615 QRFKG--LGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADDLFSVLMGEDVEA 665



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 59/89 (66%), Gaps = 6/89 (6%)

Query: 720 CSLLDTI-FSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              L  +    G++   G ++QR+KGLGEM+A +L  TT++ D R L +V + DA+QADD
Sbjct: 595 RDALIALGRENGKRLREG-AVQRFKGLGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADD 653

Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           LFS LMG++VE RR+FIQ N+     LDI
Sbjct: 654 LFSVLMGEDVEARRQFIQRNAKDVRFLDI 682


>gi|42518089|ref|NP_964019.1| DNA gyrase subunit B [Lactobacillus johnsonii NCC 533]
 gi|41582373|gb|AAS07985.1| DNA gyrase subunit B [Lactobacillus johnsonii NCC 533]
          Length = 655

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 277/640 (43%), Positives = 405/640 (63%), Gaps = 7/640 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +  +Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN+IDE L G+A  
Sbjct: 17  EKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 75

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 76  IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 135

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L++ + R+G  Y +SF +G +   +   G+    + GT V F P  DIF
Sbjct: 136 GASVVNALSTKLEVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLEEHGTIVRFYPDPDIF 195

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                F+   L++R+REL+FLN  ++++  DKR          ++GGI+ +V++L++ ++
Sbjct: 196 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKESAETDVYHFEGGIKEYVAFLNKGQE 255

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G+ + I +++A+++ +GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 256 VLFDEPIYVEGNYEGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 315

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+++S+K P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 316 DYAHKAKILKDKDDNLSGEDIREGITAIVSVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 375

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 376 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 435

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI +L TAL
Sbjct: 436 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 495

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M  +I  G++YI +PPL
Sbjct: 496 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 554

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK  +Y+  +E L DYL     S + I       G +    L          ++ 
Sbjct: 555 YQVRQGKVEKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLWET--TMNPENRR 612

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           +    P + +   +   +         +E     A  + N
Sbjct: 613 LDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKNAKYVEN 652



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 123/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 288 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAIVSVK 347

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            P+    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 348 HPNPQFEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 407

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 408 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 467

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 468 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 527

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +     +  +     L D +       K I 
Sbjct: 528 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPSPKPI- 586

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRREFI++N
Sbjct: 587 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKN 646

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 647 AKYVENLD 654


>gi|58336359|ref|YP_192944.1| DNA gyrase subunit B [Lactobacillus acidophilus NCFM]
 gi|227902590|ref|ZP_04020395.1| DNA gyrase subunit B [Lactobacillus acidophilus ATCC 4796]
 gi|58253676|gb|AAV41913.1| DNA gyrase subunit B [Lactobacillus acidophilus NCFM]
 gi|227869679|gb|EEJ77100.1| DNA gyrase subunit B [Lactobacillus acidophilus ATCC 4796]
          Length = 654

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 280/655 (42%), Positives = 408/655 (62%), Gaps = 19/655 (2%)

Query: 1   MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48
           M+DN + +             Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++EV
Sbjct: 1   MADNSKENLDKIKEYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEV 59

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN+IDE L G+A  I +T+N DGS TV D+GRGIP D+ ++ G  A E + T LHAGGK
Sbjct: 60  IDNSIDERLAGFATKIEITINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167
           F    YKVSGGLHGVG SVVNALS+ L + + R+G  Y + F +G + + +   G+   +
Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQVGTVPLD 179

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             GT V F P  DIF     F+   L++R+REL+FLN  ++++  DKR          ++
Sbjct: 180 QHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLELTFTDKRKETAETDVYKFE 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+ +V++L+  ++ L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG
Sbjct: 240 GGIKEYVAFLNEGQEVLFDEPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H +G ++ALTR +  Y  K+   K    ++ G+D REG T+V+S+K P P+F  QTK K
Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTK 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+ R+ V+   ++  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+
Sbjct: 360 LGNSDARTAVDKSFSETFSRFLMENPSIGRKIVEKGQLAERARSAAKRAREVTRKKSGLE 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D
Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M 
Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585
            +I  G++YI +PPLY + +GK ++Y+  +E L DYL +   S + +       G +   
Sbjct: 539 PMIDKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPVVQRYKGLGEMDPE 598

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            L          ++ +    P + K   E   +         ++     A  + N
Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKDADEVFELLMGNEVAPRRDFIQKNAKYVEN 651



 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 126/369 (34%), Gaps = 35/369 (9%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            PS    G           +  +         +++ +  S+   ++         +S ++
Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSIGRKIVEKGQLAERARSAAK 406

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTI--FSIGRKGI 734
                  +      I    +       L  +  G  IK +     L D +       K +
Sbjct: 527 TLLLTLFYNYMRPMIDKGYVY-IARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPV 585

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD++F  LMG+EV PRR+FIQ+
Sbjct: 586 -VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADEVFELLMGNEVAPRRDFIQK 644

Query: 795 NSLPS-ALD 802
           N+     LD
Sbjct: 645 NAKYVENLD 653


>gi|28896141|ref|NP_802491.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes SSI-1]
 gi|28811391|dbj|BAC64324.1| putative DNA topoisomerase IV, subunit B [Streptococcus pyogenes
           SSI-1]
          Length = 649

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 273/650 (42%), Positives = 399/650 (61%), Gaps = 19/650 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+      ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDDIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G++Y   F N G     L   G+A    +GT VTF+P
Sbjct: 119 LHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+
Sbjct: 179 DDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T
Sbjct: 239 EDKETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDSIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LED          I       G ++ N L  
Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWE 595

Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                +    I   I D      +  +     +       +  +  +L  
Sbjct: 596 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 378 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 437

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 438 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 497

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712
            N D ++           +   + + +F  +Y R           L  L  +  G    +
Sbjct: 498 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 555

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           KI        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++
Sbjct: 556 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 615

Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795
           A+   S LMGD+  PRR++I++N
Sbjct: 616 AERRVSVLMGDKAAPRRQWIEDN 638


>gi|50914074|ref|YP_060046.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10394]
 gi|50903148|gb|AAT86863.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10394]
          Length = 650

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 273/647 (42%), Positives = 396/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +VES
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+      +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVTSHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 8/262 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DK 713
            N D ++           +      F +      + +  +    L  L  +  G    +K
Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY-IALPPLYKMSKGKGKTEK 557

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A
Sbjct: 558 IAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARA 617

Query: 774 DDLFSRLMGDEVEPRREFIQEN 795
           +   S LMGD+  PRR++I++N
Sbjct: 618 ERRVSVLMGDKAAPRRQWIEDN 639


>gi|94994199|ref|YP_602297.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10750]
 gi|94547707|gb|ABF37753.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10750]
          Length = 650

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +VES
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 8/262 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DK 713
            N D ++           +      F +      + +  +    L  L  +  G    +K
Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY-IALPPLYKMSKGKGKTEK 557

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A
Sbjct: 558 IAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARA 617

Query: 774 DDLFSRLMGDEVEPRREFIQEN 795
           +   S LMGD+  PRR++I++N
Sbjct: 618 ERRVSVLMGDKAAPRRQWIEDN 639


>gi|29830864|ref|NP_825498.1| DNA gyrase subunit B [Streptomyces avermitilis MA-4680]
 gi|29607977|dbj|BAC72033.1| putative DNA gyrase subunit B [Streptomyces avermitilis MA-4680]
          Length = 692

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 286/653 (43%), Positives = 399/653 (61%), Gaps = 24/653 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S+    +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+A
Sbjct: 31  SNGEVTASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHA 89

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I +T+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLH
Sbjct: 90  DTIDITILADGGVRVIDNGRGIPVGIVPSEGKPALEVVLTVLHAGGKFGGGGYAVSGGLH 149

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS + + +K +G  +   +  G+   PL     A ++TGT VTF   +DI
Sbjct: 150 GVGVSVVNALSSKVSVEVKTDGFRWTQEYKMGVPTAPLSQ-NEATDETGTSVTFWADADI 208

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFY 225
           F   +++++TL  R +E++FLN  + I L D+R                  E + +T  Y
Sbjct: 209 FETTEYSFETLSRRFQEMAFLNKGLTIKLTDERESAKATAGADEAGADEKDEVKTVTYHY 268

Query: 226 KGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282
           +GGI  FV Y   R    +  + I ++    +  +S+++AM+WN GY E V  F N I  
Sbjct: 269 EGGIVDFVKYLNSRKGDAVHPTVIDLEAEDRDKSLSLEVAMQWNSGYTEGVYSFANIIHT 328

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  Q
Sbjct: 329 HEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQ 388

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++E ++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRK
Sbjct: 389 TKTKLGNTEAKTFVQKAVYEHLNDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRRK 448

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+
Sbjct: 449 GLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEK 508

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF F
Sbjct: 509 ARIDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLF 567

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           R M  L+  G +++ +PPLY +  G+        +   D LI         +  DS    
Sbjct: 568 RFMRPLVEAGHVFLSRPPLYKLKWGRDDFEYAYSDRERDALIELGRQAGKRVREDSIQRF 627

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
               L     + L+I  + ++       T  + A    +F+    +++    A
Sbjct: 628 KG--LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 678



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR      +  S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 606 DALIELGRQAGKRVREDSIQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 665

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 666 SVLMGEDVEARRAFIQRNAKDVRFLDI 692


>gi|115435866|ref|NP_001042691.1| Os01g0268300 [Oryza sativa Japonica Group]
 gi|75285839|sp|Q5NBJ3|GYRB_ORYSJ RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|56783730|dbj|BAD81142.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group]
 gi|56783751|dbj|BAD81163.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group]
 gi|113532222|dbj|BAF04605.1| Os01g0268300 [Oryza sativa Japonica Group]
          Length = 729

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 262/598 (43%), Positives = 369/598 (61%), Gaps = 11/598 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M +      Y A ++Q+L+ LD V+ RP MYIG T G  GLHH++YE+LDNA+DE+  GY
Sbjct: 80  MQEKRVAGEYTAANVQVLEALDGVRTRPGMYIGST-GSRGLHHLVYEILDNAVDEAQAGY 138

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSG 118
           A  + V L+ D S +V+DNGRGIPTD+H +   S  E ++T +HAGGKF      Y VSG
Sbjct: 139 ATKVDVILHGDNSVSVTDNGRGIPTDIHPQTKKSCVETVLTLMHAGGKFGGSKSGYTVSG 198

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTF 175
           GLHGVG+SVVNALS  L++ + R+G  Y  ++  G     L        + +  GT + F
Sbjct: 199 GLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGKAITMLTSRTLSDESSSRQGTRIRF 258

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFV 233
            P   IF+    F+++T+  R+REL+FLN  + I+L  +    + +     Y GG+  +V
Sbjct: 259 WPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQVQHNEYCYAGGLVEYV 318

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGL 292
            +L+  KK L   PI  +   D I++D++++W  D Y + VL + N+I   DGGTH+ GL
Sbjct: 319 KWLNTDKKSLH-DPIAFRKEMDGITVDVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGL 377

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +++LTR I ++ +KS   K    S+ G+  REG T ++++K+P+P F  QTK +L + EV
Sbjct: 378 KTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEV 437

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R +VE  V + L+ +LE HP     I+ K L+A     AA+RAR+L R K VL  +SLPG
Sbjct: 438 RRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPG 497

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC+  DP++SE+F+VEGDSAGGSAKQGR R+ QAILPLRGKILN+ER     +  ++
Sbjct: 498 KLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIERRDEAALYKNE 557

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI  LI ALG G+  + F+   LRYHKI+I+TDADVDGAHIRTLLLTFFFR   +L   G
Sbjct: 558 EIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQKALFDEG 617

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            +Y+  PPLY + RGK   Y  D+  L++ +     +           G +    L  
Sbjct: 618 CIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNASYHIQRFKGLGEMMPAQLWE 675



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 11/191 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           + N E   E  +    ++ N +  +    K E     ++    I++      V    +  
Sbjct: 542 ILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVIL-TDADVDGAHIRT 600

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGIS 735
               F F  +        I      +  +                 L++T  +       
Sbjct: 601 LLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNA--SYH 658

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEM  +QLWETT++P+ R L ++K+ DA++A+ +FS LMG  V+ R++ IQ  
Sbjct: 659 IQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNA 718

Query: 796 SLPSA---LDI 803
           +       LDI
Sbjct: 719 ASMVNLEHLDI 729


>gi|82750947|ref|YP_416688.1| DNA topoisomerase IV subunit B [Staphylococcus aureus RF122]
 gi|82656478|emb|CAI80900.1| topoisomerase IV subunit B [Staphylococcus aureus RF122]
          Length = 665

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 270/676 (39%), Positives = 387/676 (57%), Gaps = 20/676 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQSGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FV Y++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVGYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+SI++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSIRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY +     + K ++Y   +E L                    G ++   L    
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWET- 593

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
                ++   +       +  +  +        +  Q     +   +   +       + 
Sbjct: 594 ----TMNPETRTLIRVQVEDELRSSKRVTTLMGDKVQPRREWIEKHVEFGMQEDQSILDN 649

Query: 652 SWHGSINNSDILVKRI 667
           S    + N     + I
Sbjct: 650 SEVQVLENDQFDEEEI 665



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDELRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|156889076|gb|ABU96689.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 641

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 273/621 (43%), Positives = 391/621 (62%), Gaps = 18/621 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIRVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  EP      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDHDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +V+S
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVHTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDK 610
             +    I   I D      +
Sbjct: 600 DPETRTLIRVTIDDLARAERR 620



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 382 VRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 441

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       ++    N 
Sbjct: 442 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVHTIGAGVGADFNLEDINY 501

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K +     
Sbjct: 502 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKVSYA 561

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+   
Sbjct: 562 WTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRV 621

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 622 SVLMGDKAAPRRQWIEDN 639


>gi|59798277|sp|Q6GH51|PARE_STAAR RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
          Length = 663

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 264/594 (44%), Positives = 368/594 (61%), Gaps = 14/594 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY + I
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
            SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  K+ L
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    Y
Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+S V 
Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL     
Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I 
Sbjct: 419 KNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  P
Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 616 TTLMGDKVQPRREWIEKH 633


>gi|323441138|gb|EGA98845.1| DNA topoisomerase IV subunit B [Staphylococcus aureus O11]
          Length = 663

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 264/594 (44%), Positives = 368/594 (61%), Gaps = 14/594 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY + I
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
            SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDGTIFKA 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  K+ L
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    Y
Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+S V 
Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL     
Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I 
Sbjct: 419 KNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  P
Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 616 TTLMGDKVQPRREWIEKH 633


>gi|94988398|ref|YP_596499.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS9429]
 gi|94992280|ref|YP_600379.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS2096]
 gi|94541906|gb|ABF31955.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS9429]
 gi|94545788|gb|ABF35835.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS2096]
          Length = 650

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/647 (42%), Positives = 398/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G++Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +VES
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 6/261 (2%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
            N D ++           +      F +      + +  +      +  +     K +  
Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTEKV 558

Query: 718 GPC---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                   L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+
Sbjct: 559 SYAWTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAE 618

Query: 775 DLFSRLMGDEVEPRREFIQEN 795
              S LMGD+  PRR++I++N
Sbjct: 619 RRVSVLMGDKAAPRRQWIEDN 639


>gi|295427868|ref|ZP_06820500.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128226|gb|EFG57860.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|298694654|gb|ADI97876.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 663

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 264/594 (44%), Positives = 368/594 (61%), Gaps = 14/594 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY + I
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
            SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  K+ L
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    Y
Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+S V 
Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL     
Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I 
Sbjct: 419 KNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  P
Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 616 TTLMGDKVQPRREWIEKH 633


>gi|150393905|ref|YP_001316580.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           JH1]
 gi|295406298|ref|ZP_06816105.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297244527|ref|ZP_06928410.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|54038819|sp|P66939|PARE_STAAN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|54041931|sp|P66938|PARE_STAAM RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|1777317|dbj|BAA11084.1| DNA topoisomerase IV GrlB subunit [Staphylococcus aureus]
 gi|149946357|gb|ABR52293.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|294968886|gb|EFG44908.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297178557|gb|EFH37803.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
          Length = 663

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 263/594 (44%), Positives = 369/594 (62%), Gaps = 14/594 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY + I
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
            SVVNALS WL++ I R+G+IY  SF NG   +  +V       TGT+VTF P   IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  K+ L
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    Y
Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+S V 
Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL     
Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I 
Sbjct: 419 KNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  P
Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 616 TTLMGDKVQPRREWIEKH 633


>gi|16800393|ref|NP_470661.1| DNA topoisomerase IV subunit B [Listeria innocua Clip11262]
 gi|16413798|emb|CAC96556.1| parE [Listeria innocua Clip11262]
          Length = 655

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 260/658 (39%), Positives = 387/658 (58%), Gaps = 18/658 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNY+TL  RLRE +FL   + I L+D+R       +  ++ G++ FV Y++  K  
Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIQLVDERVG--MAESFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +  +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHP-VVSFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  
Sbjct: 475 HTVGAGVG-TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593
           PPLY ++    + + ++Y   +E L+  +        I+ +     + +       ++ D
Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDAAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              + ++  D     ++              +  ++          N L       E+
Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDNQNILENENMMVEE 651



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  ++              ++      S  +          ++   +
Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
               N D +V           +      F +      + + ++      +  +     K 
Sbjct: 487 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+
Sbjct: 547 EVIEYAWTDEELDAAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 606 ARAERRVATLMGDKVEPRRQWIEKH 630


>gi|227877545|ref|ZP_03995605.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256849618|ref|ZP_05555050.1| subunit B [Lactobacillus crispatus MV-1A-US]
 gi|227862844|gb|EEJ70303.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256713734|gb|EEU28723.1| subunit B [Lactobacillus crispatus MV-1A-US]
          Length = 654

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 400/626 (63%), Gaps = 19/626 (3%)

Query: 1   MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48
           M+DN + +             Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E+
Sbjct: 1   MADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN+IDE L G+A  I VT+N DGS TV D+GRGIP D+ ++ G  A E + T LHAGGK
Sbjct: 60  IDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167
           F    YKVSGGLHGVG SVVNALS+ L + + R+   Y + F +G + + +   G+   +
Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDSKKYFIDFDHGRVKDEMKQIGTVPLD 179

Query: 168 DTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + GT V F P  DIF+      D  L++R+REL+FLN  + ++  DKR          ++
Sbjct: 180 EHGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRKDTAETDVYKFE 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+ +V++L++ ++ L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG
Sbjct: 240 GGIKEYVAFLNKGQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H +G ++ALTR +  Y  KS   K    ++ G+D REG T+++S+K P P+F  QTK K
Sbjct: 300 MHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQFEGQTKTK 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+ R+ V+   ++  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+
Sbjct: 360 LGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D
Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M 
Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585
            +I  G++YI KPPLY + +GK ++Y+  +E L DYL +   S +         G +   
Sbjct: 539 PMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMDPE 598

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611
            L          ++ +    P + K 
Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVK 346

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            PS    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +        +     L D +       K  +
Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPK-PT 585

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRR+FIQ+N
Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVSPRRDFIQKN 645

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 646 AKYVENLD 653


>gi|161506639|ref|YP_001576587.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
 gi|160347628|gb|ABX26302.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
          Length = 654

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 278/626 (44%), Positives = 401/626 (64%), Gaps = 19/626 (3%)

Query: 1   MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48
           M+DN + +             Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E+
Sbjct: 1   MADNSKKNLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN+IDE L G+A  I +T+N DGS TV D+GRGIP D+ K+ G  A E + T LHAGGK
Sbjct: 60  IDNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQKKTGRPALETVFTVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167
           F    YKVSGGLHGVG SVVNALS+ L + + R+G  Y + F +G + + +   G+    
Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLE 179

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             GT V F P  DIF     F+   L++R+REL+FLN  ++++  DKR          Y+
Sbjct: 180 QHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDSAETDVYKYE 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+ +V++L++ ++ L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG
Sbjct: 240 GGIKEYVAFLNKGQEVLFDEPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H +G ++ALTR +  Y  K+   K    ++ G+D REG T+V+S+K P P+F  QTK K
Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTK 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+ R+ V+   ++  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+
Sbjct: 360 LGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D
Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M 
Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585
            +I  G++YI +PPLY + +GK ++Y+  +E L DYL +   S + +       G +   
Sbjct: 539 PMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPVVQRYKGLGEMDPE 598

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611
            L          ++ +    P + K 
Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 125/369 (33%), Gaps = 35/369 (9%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            PS    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTI--FSIGRKGI 734
                  +      I    +       L  +  G  IK +     L D +       K +
Sbjct: 527 TLLLTLFYNYMRPMIEKGYVY-IARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPV 585

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRR+FIQ+
Sbjct: 586 -VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRDFIQK 644

Query: 795 NSLPS-ALD 802
           N+     LD
Sbjct: 645 NAKYVENLD 653


>gi|15674930|ref|NP_269104.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes M1 GAS]
 gi|13622073|gb|AAK33825.1| putative DNA topoisomerase IV (subunit B) [Streptococcus pyogenes
           M1 GAS]
          Length = 650

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/647 (42%), Positives = 398/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G++Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +VES
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 8/262 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DK 713
            N D ++           +      F +      + +  +    L  L  +  G    +K
Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY-IALPPLYKMSKGKGKTEK 557

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A
Sbjct: 558 IAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARA 617

Query: 774 DDLFSRLMGDEVEPRREFIQEN 795
           +   S LMGD+  PRR++I++N
Sbjct: 618 ERRVSVLMGDKAAPRRQWIEDN 639


>gi|229825735|ref|ZP_04451804.1| hypothetical protein GCWU000182_01098 [Abiotrophia defectiva ATCC
           49176]
 gi|229790298|gb|EEP26412.1| hypothetical protein GCWU000182_01098 [Abiotrophia defectiva ATCC
           49176]
          Length = 677

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/641 (38%), Positives = 376/641 (58%), Gaps = 19/641 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     YD   I IL+GL+AV+KRP MYIG T G  GLHH+I+E+LDN IDE L G+
Sbjct: 1   MSEN-----YDGSQIVILEGLEAVRKRPGMYIGST-GTRGLHHLIWEILDNGIDEHLAGF 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + L  DG  T+ D GRG+P D+H  + I    V+ T LHAGGKF+  +YKVSGGL
Sbjct: 55  CSQIDLILRNDGGITIRDYGRGVPVDIHPTKKIPTERVVYTVLHAGGKFSGGAYKVSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPL------VVTGSAGNDTGTEV 173
           HGVG SVVNALS+ + + I+R+GN+Y   + N G     L       V     +D GT V
Sbjct: 115 HGVGASVVNALSTKMIVEIRRDGNVYVDEYENGGHPVTALVKGELPAVKTCKKSDKGTSV 174

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           TF P   IF   +F  D ++ +L+E +FLN  ++++  D+ + E    T   K GI+++V
Sbjct: 175 TFYPDDTIFETIEFKADIIKKKLKETAFLNKGLKLNFKDEITGEE--KTYEEKDGIKSYV 232

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y++R  + +    + ++G   +I +++A ++ +G+ E +  + N I   DGGT ++G +
Sbjct: 233 KYINRETEVIHDEVVYVEGESGDIEVEVAFQYTNGFSEQINAYCNRINVVDGGTLVTGFK 292

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y  +    K    +  G D R G  +++SIK PDP+F  QTK KL +++ +
Sbjct: 293 TALTRVMNQYARELGYLKGKDDNFDGKDIRNGIVAIISIKHPDPQFEGQTKTKLGNTDAK 352

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  V+  +  + +++    K I+     +   R A+ +AR+   +   L+   +  K
Sbjct: 353 TAVEEVVSKEIVRYFDKNIEVLKSILDLAQKSYSARTASDKARNAVLK--SLNDFDVKSK 410

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LA CS ++ ++ E++LVEGDSAGG+ K  R+R+ QA+LPLRGKILNVE+A  +K+L + E
Sbjct: 411 LASCSSKNAEECEIYLVEGDSAGGTVKTARNRKTQAVLPLRGKILNVEKAALEKILVNNE 470

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I ++I   G GIG D FDI KLRY KIII+TDADVDGAHI TLLLTFF+R MP LI  G 
Sbjct: 471 IKSMIATFGCGIG-DEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEGK 529

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +Y   PPLY +   +S   V +E+ L +  ++      +E     K + +K+  +    +
Sbjct: 530 IYRGLPPLYKVDYEESGAKVLEEKKLGEGQLDI-FQLGVEDKPSEKQLKAKSGKKKKKSE 588

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
            +  D  ++ F  N ++  +E     G+   ++ Q    +L
Sbjct: 589 YIFNDYELEKFKKNKNRKILEIQRYKGLGEMDASQLWETTL 629



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 54/73 (73%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           RK + +QRYKGLGEM+ASQLWETTL+P TRSL R+ I+D  +AD++ S LM   V PRRE
Sbjct: 605 RKILEIQRYKGLGEMDASQLWETTLDPKTRSLARIDISDTVEADEVTSLLMSSVVPPRRE 664

Query: 791 FIQENSLPSALDI 803
           FI   +  + +DI
Sbjct: 665 FIMNEAKYAKVDI 677


>gi|300362674|ref|ZP_07058850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           gasseri JV-V03]
 gi|300353665|gb|EFJ69537.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           gasseri JV-V03]
          Length = 655

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 277/640 (43%), Positives = 404/640 (63%), Gaps = 7/640 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +  +Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN+IDE L G+A  
Sbjct: 17  EKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 75

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 76  IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 135

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y +SF +G +   +   G+    + GT V F P  DIF
Sbjct: 136 GASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQIGTVPLEEHGTIVHFYPDPDIF 195

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                F+   L++R+REL+FLN  ++++  DKR          ++GGI+ +V++L++ ++
Sbjct: 196 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKESAETDVYHFEGGIKEYVAFLNKGQE 255

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G+ + I +++A+++ +GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 256 VLFDEPIYVEGNYEGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 315

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+V+S+K P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 316 DYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 375

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 376 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 435

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI +L TAL
Sbjct: 436 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 495

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M  +I  G++YI +PPL
Sbjct: 496 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 554

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK  +Y+  +E L DYL     S + +       G +    L          ++ 
Sbjct: 555 YQVRQGKIEKYLDTDEELHDYLGTLQPSPKPVVQRYKGLGEMDPEQLWET--TMNPENRR 612

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           +    P + +   +   +         +E     A  + N
Sbjct: 613 LDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKNAKYVEN 652



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 123/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 288 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVK 347

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            P+    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 348 HPNPQFEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 407

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 408 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 467

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 468 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 527

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +     +  +     L D +       K + 
Sbjct: 528 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKIEKYLDTDEELHDYLGTLQPSPKPV- 586

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRREFI++N
Sbjct: 587 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKN 646

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 647 AKYVENLD 654


>gi|301320449|gb|ADK69092.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 634

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/565 (43%), Positives = 363/565 (64%), Gaps = 7/565 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A+SI++LKGL+AV+ RP MYIG T   +GLHH+++E+LDN+IDE++ GYAD+I V
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  +    V DNGRGIP  ++ +   SA  ++ T+LHAGGKF+ +SYK+SGGLHGVG S
Sbjct: 61  TITKENEIIVQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS ++++ + R    Y   F  G    + L   G   +  GT+V F P  +IF   
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHT-DLRGTKVKFKPDPEIFKET 179

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y+ +++++++L+FLN  ++I+L D+R  +  E       GI  ++   +  K  + 
Sbjct: 180 VVFDYEVIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +   +    ++I +++A+++N  Y EN++ F NNI   +GGTH  GL+ AL R I  Y 
Sbjct: 238 PNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINRYA 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +    + K       DD +EG   +LS++  DP++  QTK KL + + +  V   + +  
Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L + P +AK I+ K ++A   R AA++AR+ TRRK  LD  SLPGKLADC  +D   
Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADCETKDSSI 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER    +  S+ EI ++ITA+GTG
Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAIGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I ++  D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M  L+ NG +YI +PPLY I
Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569
             GK + Y   +  L++   N+  +
Sbjct: 537 EAGKKIAYAYTDSQLDELKNNEFNN 561



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 4/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E      +++ + +  I    ++    S      +V      V    +    
Sbjct: 450 VLNVERVTEARAFSNNEIKSIITAIGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738
             F +      + +  I       L  I  G KI      S LD + +     +  ++QR
Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDSQLDELKNNEFNNLKYTIQR 568

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P  R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+  
Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628

Query: 799 S-ALD 802
              +D
Sbjct: 629 VENID 633


>gi|156889072|gb|ABU96687.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156889074|gb|ABU96688.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 641

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 273/621 (43%), Positives = 391/621 (62%), Gaps = 18/621 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIRVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  EP      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDHDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +V+S
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVHTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDK 610
             +    I   I D      +
Sbjct: 600 DPETRTLIRVTIDDLARAERR 620



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 382 VRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 441

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       ++    N 
Sbjct: 442 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVHTIGAGVGADFNLEDINY 501

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K +     
Sbjct: 502 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKVSYA 561

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+   
Sbjct: 562 WTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRV 621

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 622 SVLMGDKAAPRRKWIEDN 639


>gi|227889153|ref|ZP_04006958.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|268318566|ref|YP_003292222.1| DNA gyrase, subunit B [Lactobacillus johnsonii FI9785]
 gi|227850382|gb|EEJ60468.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|262396941|emb|CAX65955.1| DNA gyrase, subunit B [Lactobacillus johnsonii FI9785]
          Length = 655

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 277/640 (43%), Positives = 404/640 (63%), Gaps = 7/640 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +  +Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN+IDE L G+A  
Sbjct: 17  EKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 75

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 76  IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 135

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y +SF +G +   +   G+    + GT V F P  DIF
Sbjct: 136 GASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLEEHGTIVHFYPDPDIF 195

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                F+   L++R+REL+FLN  ++++  DKR          ++GGI+ +V++L++ ++
Sbjct: 196 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKESAETDVYHFEGGIKEYVAFLNKGQE 255

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G+ + I +++A+++ +GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 256 VLFDEPIYVEGNYEGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 315

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+V+S+K P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 316 DYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 375

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 376 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 435

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI +L TAL
Sbjct: 436 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 495

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M  +I  G++YI +PPL
Sbjct: 496 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 554

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK  +Y+  +E L DYL     S + +       G +    L          ++ 
Sbjct: 555 YQVRQGKVEKYLDTDEELHDYLGTLQPSPKPVVQRYKGLGEMDPEQLWET--TMNPENRR 612

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           +    P + +   +   +         +E     A  + N
Sbjct: 613 LDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKNAKYVEN 652



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 123/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 288 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVK 347

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            P+    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 348 HPNPQFEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 407

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 408 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 467

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 468 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 527

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +     +  +     L D +       K + 
Sbjct: 528 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPSPKPV- 586

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRREFI++N
Sbjct: 587 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKN 646

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 647 AKYVENLD 654


>gi|94990278|ref|YP_598378.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10270]
 gi|94543786|gb|ABF33834.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10270]
          Length = 650

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G++Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTILKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +VES
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y      LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTYGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 6/261 (2%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
            N D ++           +      F +      + +  +      +  +     K +  
Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKV 558

Query: 718 GPC---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                   L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+
Sbjct: 559 SYAWTYGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAE 618

Query: 775 DLFSRLMGDEVEPRREFIQEN 795
              S LMGD+  PRR++I++N
Sbjct: 619 RRVSVLMGDKAAPRRQWIEDN 639


>gi|227893834|ref|ZP_04011639.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864323|gb|EEJ71744.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 654

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 279/626 (44%), Positives = 404/626 (64%), Gaps = 19/626 (3%)

Query: 1   MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48
           M+DN + +             Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E+
Sbjct: 1   MADNSKENLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN+IDE L G+A  I VT+N DGS TV D+GRGIP D+ ++ G  A E + T LHAGGK
Sbjct: 60  IDNSIDERLAGFATKIEVTVNEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167
           F    YKVSGGLHGVG SVVNALS+ L + + R+G  Y + F +G + + +   G+   +
Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLD 179

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + GT V F P  DIF     F+   L++R+REL+FLN  ++++  DKR          Y+
Sbjct: 180 EHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDSAETDVYKYE 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+ +V++L++ ++ L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG
Sbjct: 240 GGIKEYVAFLNKGQEVLFDEPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H +G ++ALTR +  Y  K+   K    ++ G+D REG T+V+S+K P P+F  QTK K
Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTK 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+ R+ V+   ++  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+
Sbjct: 360 LGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D
Sbjct: 420 IANLPGKLADNTSNDPNISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M 
Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585
            +I  G++YI +PPLY + +GK ++Y+  +E L DYL +   S + I       G +   
Sbjct: 539 PMIEKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDPE 598

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611
            L +        ++ +    P + K 
Sbjct: 599 QLWDT--TMNPENRRLDRVSPEYAKD 622



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            PS    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPNISELFIVEGNSAGGSAKQGRSRLTQAILPI 466

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +        +     L D +       K I 
Sbjct: 527 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPI- 585

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLW+TT+NP+ R L RV    A  AD +F  LMG+EV PRR+FIQ+N
Sbjct: 586 VQRYKGLGEMDPEQLWDTTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRDFIQKN 645

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 646 AKYVENLD 653


>gi|42560566|ref|NP_975017.1| DNA gyrase subunit B [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492062|emb|CAE76659.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
          Length = 634

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/565 (43%), Positives = 362/565 (64%), Gaps = 7/565 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A+SI++LKGL+AV+ RP MYIG T   +GLHH+++E+LDN+IDE++ GYAD+I V
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  +    V DNGRGIP  ++ +   SA  ++ T+LHAGGKF+ +SYK+SGGLHGVG S
Sbjct: 61  TITKENEIIVQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS ++++ + R    Y   F  G    + L   G   +  GT+V F P  +IF   
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHT-DLRGTKVKFKPDPEIFKET 179

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y+ +++++++L+FLN  ++I+L D+R  +  E       GI  ++   +  K  + 
Sbjct: 180 VVFDYEVIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +   +    ++I +++A+++N  Y EN++ F NNI   +GGTH  GL+  L R I  Y 
Sbjct: 238 PNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQVLIRDINRYA 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +    + K       DD +EG   +LS++  DP++  QTK KL + + +  V   + +  
Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L + P +AK I+ K ++A   R AA++AR+ TRRK  LD  SLPGKLADC  +D   
Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADCETKDSSI 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER    +  S+ EI ++ITA+GTG
Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAIGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I ++  D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M  L+ NG +YI +PPLY I
Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569
             GK + Y   +  L++   N+  +
Sbjct: 537 EAGKKIAYAYTDSQLDELKNNEFNN 561



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 4/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E      +++ + +  I    ++    S      +V      V    +    
Sbjct: 450 VLNVERVTEARAFSNNEIKSIITAIGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738
             F +      + +  I       L  I  G KI      S LD + +     +  ++QR
Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDSQLDELKNNEFNNLKYTIQR 568

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P  R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+  
Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628

Query: 799 S-ALD 802
              +D
Sbjct: 629 VENID 633


>gi|256384292|gb|ACU78862.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385125|gb|ACU79694.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455935|gb|ADH22170.1| DNA gyrase, B subunit [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 634

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/565 (43%), Positives = 363/565 (64%), Gaps = 7/565 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A+SI++LKGL+AV+ RP MYIG T   +GLHH+++E+LDN+IDE++ GYAD+I V
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  +    V DNGRGIP  ++ +   SA  ++ T+LHAGGKF+ ++YK+SGGLHGVG S
Sbjct: 61  TITKENEVIVQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS ++++ + R    Y   F  G    + L   G   +  GT+V F P  +IF   
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHT-DLRGTKVKFKPDPEIFKET 179

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y+ +++++++L+FLN  ++I+L D+R  +  E       GI  ++   +  K  + 
Sbjct: 180 VVFDYEIIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +   +    ++I +++A+++N  Y EN++ F NNI   +GGTH  GL+ AL R I  Y 
Sbjct: 238 PNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINRYA 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +    + K       DD +EG   +LS++  DP++  QTK KL + + +  V   + +  
Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L + P +AK I+ K ++A   R AA++AR+ TRRK  LD  SLPGKLADC  +D   
Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADCETKDSSI 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER    +  S+ EI ++ITA+GTG
Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAVGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I ++  D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M  L+ NG +YI +PPLY I
Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569
             GK + Y   +  L++   N+  +
Sbjct: 537 EAGKKIAYAYTDSQLDELKNNEFNN 561



 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 4/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E      +++ + +  +    ++    S      +V      V    +    
Sbjct: 450 VLNVERVTEARAFSNNEIKSIITAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738
             F +      + +  I       L  I  G KI      S LD + +     +  ++QR
Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDSQLDELKNNEFNNLKYTIQR 568

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P  R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+  
Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628

Query: 799 S-ALD 802
              +D
Sbjct: 629 VENID 633


>gi|116628688|ref|YP_813860.1| DNA gyrase, B subunit [Lactobacillus gasseri ATCC 33323]
 gi|238853343|ref|ZP_04643723.1| DNA gyrase, B subunit [Lactobacillus gasseri 202-4]
 gi|282852320|ref|ZP_06261662.1| DNA gyrase, B subunit [Lactobacillus gasseri 224-1]
 gi|311111572|ref|ZP_07712969.1| DNA gyrase, B subunit [Lactobacillus gasseri MV-22]
 gi|116094270|gb|ABJ59422.1| DNA gyrase subunit B [Lactobacillus gasseri ATCC 33323]
 gi|238834031|gb|EEQ26288.1| DNA gyrase, B subunit [Lactobacillus gasseri 202-4]
 gi|282556062|gb|EFB61682.1| DNA gyrase, B subunit [Lactobacillus gasseri 224-1]
 gi|311066726|gb|EFQ47066.1| DNA gyrase, B subunit [Lactobacillus gasseri MV-22]
          Length = 655

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 277/640 (43%), Positives = 404/640 (63%), Gaps = 7/640 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +  +Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN+IDE L G+A  
Sbjct: 17  EKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 75

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 76  IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 135

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y +SF +G +   +   G+    + GT V F P  DIF
Sbjct: 136 GASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQIGTVPLEEHGTIVHFYPDPDIF 195

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                F+   L++R+REL+FLN  ++++  DKR          ++GGI+ +V++L++ ++
Sbjct: 196 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKESAETDVYHFEGGIKEYVAFLNKGQE 255

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G+ + I +++A+++ +GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 256 VLFDEPIYVEGNYEGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 315

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+V+S+K P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 316 DYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 375

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 376 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 435

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI +L TAL
Sbjct: 436 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 495

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M  +I  G++YI +PPL
Sbjct: 496 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 554

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK  +Y+  +E L DYL     S + +       G +    L          ++ 
Sbjct: 555 YQVRQGKIEKYLDTDEELHDYLGTLQPSPKPVVQRYKGLGEMDPEQLWET--TMNPENRR 612

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           +    P + +   +   +         +E     A  + N
Sbjct: 613 LDRVSPEYAEDADKVFDLLMGNEVGPRREFIEKNAKYVEN 652



 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 123/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 288 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVK 347

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            P+    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 348 HPNPQFEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 407

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 408 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 467

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 468 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 527

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +     +  +     L D +       K + 
Sbjct: 528 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKIEKYLDTDEELHDYLGTLQPSPKPV- 586

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRREFI++N
Sbjct: 587 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAEDADKVFDLLMGNEVGPRREFIEKN 646

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 647 AKYVENLD 654


>gi|299541761|ref|ZP_07052084.1| DNA gyrase subunit B [Lysinibacillus fusiformis ZC1]
 gi|298725499|gb|EFI66140.1| DNA gyrase subunit B [Lysinibacillus fusiformis ZC1]
          Length = 644

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/589 (48%), Positives = 396/589 (67%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + +QN +Y+AD IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L G+  
Sbjct: 9   EGLQNQAYEADQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGFCT 67

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  +    V DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 68  DIKVTIEKENWIRVEDNGRGIPVSIQEKMGKPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 127

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS    +++ REG+I+E+ F  G     L+V G   +  GT   F    +IF
Sbjct: 128 VGASVVNALSVETIVQVHREGHIHEIKFERGKTVQELMVIGDTDH-NGTTTRFKADPEIF 186

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + YD L HR+REL++LN  ++I++ D+R  E R  T  Y+GGI ++V +L++ K 
Sbjct: 187 KETTVYEYDILAHRIRELAYLNRGIKITIADEREEEIRSTTYHYEGGIRSYVEHLNQSKD 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+      + G +D I++++AM++N G+  N+  F NNI   +GGTH SG ++ALTR I 
Sbjct: 247 PIHDPID-VLGEKDGITVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTRVIN 305

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  KS   K+   ++ G+D REG T+++S+K PDP+F  QTK KL +SEV  +  S  +
Sbjct: 306 DYARKSGLLKESDANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNSLFS 365

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           DG   ++ E+P  A+ IV+K L A+  R AA++AR+ TRRK  L+++SLPGKLADCS  +
Sbjct: 366 DGFERFMLENPTVARKIVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCSSTN 425

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P   E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR DK+LS+ EI  +ITA 
Sbjct: 426 PADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMITAF 485

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ F++ K RYHKIIIMTDADVDGAHIRTLLLTFFFR +  LI  G++YI +PPL
Sbjct: 486 GTGIGEE-FNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQPPL 544

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y + +GK ++Y  DEE+L++ L       +         G ++   L  
Sbjct: 545 YQVKQGKHIEYCYDEETLKEILERLPKMPKPNVQRYKGLGEMNAEQLWE 593



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 66/87 (75%), Gaps = 2/87 (2%)

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                +L+ +  + +   ++QRYKGLGEMNA QLWETT++P+ R+LL+V++ DA +A+  
Sbjct: 560 ETLKEILERLPKMPK--PNVQRYKGLGEMNAEQLWETTMDPEYRTLLQVELDDAIKANQA 617

Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803
           F RLMGDEVEPRR+FI+EN++ + LDI
Sbjct: 618 FERLMGDEVEPRRQFIEENAVYANLDI 644


>gi|57651113|ref|YP_184916.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL]
 gi|81859679|sp|Q5HJZ1|GYRB_STAAC RecName: Full=DNA gyrase subunit B
 gi|57285299|gb|AAW37393.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL]
          Length = 644

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 288/591 (48%), Positives = 395/591 (66%), Gaps = 6/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+A +KRP MYIG T  E GLHH+++E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAARKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 65  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M  LI  G++YI +P
Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           V    +      F +      I +  +      +  L     K  +      LD + S  
Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568

Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
              +      S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD 
Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625

Query: 785 VEPRREFIQENSLPSALD 802
           VE RR+FI++N++ + LD
Sbjct: 626 VENRRQFIEDNAVYANLD 643


>gi|16803326|ref|NP_464811.1| DNA topoisomerase IV subunit B [Listeria monocytogenes EGD-e]
 gi|47097246|ref|ZP_00234807.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224501769|ref|ZP_03670076.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-561]
 gi|254828649|ref|ZP_05233336.1| parE [Listeria monocytogenes FSL N3-165]
 gi|254829957|ref|ZP_05234612.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 10403S]
 gi|254898549|ref|ZP_05258473.1| DNA topoisomerase IV subunit B [Listeria monocytogenes J0161]
 gi|254911960|ref|ZP_05261972.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
 gi|254936287|ref|ZP_05267984.1| parE [Listeria monocytogenes F6900]
 gi|284801671|ref|YP_003413536.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5578]
 gi|284994813|ref|YP_003416581.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5923]
 gi|21328242|gb|AAM48488.1|AF084044_1 DNA topoisomerase IV subunit B [Listeria monocytogenes]
 gi|16410702|emb|CAC99364.1| parE [Listeria monocytogenes EGD-e]
 gi|47014371|gb|EAL05343.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601049|gb|EEW14374.1| parE [Listeria monocytogenes FSL N3-165]
 gi|258608877|gb|EEW21485.1| parE [Listeria monocytogenes F6900]
 gi|284057233|gb|ADB68174.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5578]
 gi|284060280|gb|ADB71219.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5923]
 gi|293589923|gb|EFF98257.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
          Length = 655

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 261/658 (39%), Positives = 385/658 (58%), Gaps = 18/658 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHEDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNY+TL  RLRE +FL   + I LID+R          ++ G++ FV Y++  K  
Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  
Sbjct: 475 HTVGAGVG-TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593
           PPLY ++    + + ++Y   +E L+  +        I+ +     + +       ++ D
Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              + ++  D     ++              +  ++          N L       E+
Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDSQNILENENMMVEE 651



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  ++              ++      S  +          ++   +
Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
               N D +V           +      F +      + + ++      +  +     K 
Sbjct: 487 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+
Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 606 ARAERRVATLMGDKVEPRRQWIEKH 630


>gi|329666396|gb|AEB92344.1| DNA gyrase subunit B [Lactobacillus johnsonii DPC 6026]
          Length = 655

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 278/640 (43%), Positives = 405/640 (63%), Gaps = 7/640 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +  +Y+A  IQ+L GL+AV+KRP MYIG T  + GLHH+++E++DN+IDE L G+A  
Sbjct: 17  EKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 75

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 76  IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 135

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L++ + R+G  Y +SF +G +   +   G+    + GT V F P  DIF
Sbjct: 136 GASVVNALSTKLEVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLEEHGTIVRFYPDPDIF 195

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +    F+   L++R+REL+FLN  ++++  DKR          ++GGI+ +V++L++ ++
Sbjct: 196 TETITFDDKILKNRIRELAFLNKGLKLTFTDKRKESAETDVYHFEGGIKEYVAFLNKGQE 255

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G+ + I +++A+++ +GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 256 VLFDEPIYVEGNYEGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 315

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+V+S+K P P+F  QTK KL +S+ R+ V+   +
Sbjct: 316 DYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPSPQFEGQTKTKLGNSDARTAVDRAFS 375

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 376 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 435

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI +L TAL
Sbjct: 436 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 495

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+  M  +I  G++YI +PPL
Sbjct: 496 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 554

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y + +GK  +Y+  +E L DYL     S + I       G +    L          ++ 
Sbjct: 555 YQVRQGKVEKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLWET--TMNPENRR 612

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           +    P + +   +   +         +E     A  + N
Sbjct: 613 LDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKNAKYVEN 652



 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 123/368 (33%), Gaps = 33/368 (8%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 288 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVK 347

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            PS    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 348 HPSPQFEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 407

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 408 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 467

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 468 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 527

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735
                  +      I    +      +  +     +  +     L D +       K I 
Sbjct: 528 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPSPKPI- 586

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRREFI++N
Sbjct: 587 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKN 646

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 647 AKYVENLD 654


>gi|313638149|gb|EFS03407.1| DNA topoisomerase IV, B subunit [Listeria seeligeri FSL S4-171]
          Length = 655

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 264/658 (40%), Positives = 387/658 (58%), Gaps = 18/658 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GLDAV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNDYNDDSIQVLEGLDAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDEALAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I REG  YE  F N G  +  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINREGATYEQRFKNGGKPNGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               +NY+TL  RLRE +FL   + I LID+R     E +  ++ G++ FV Y++  K  
Sbjct: 178 PTTSYNYETLSERLRESAFLLKGMLIQLIDERVG--MEESFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRVFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  
Sbjct: 475 HTVGAGVG-TEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593
           PPLY ++    + + ++Y   +E L+  +        I+ +     + +       ++ D
Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              + ++  D     ++              +  ++          N L       E+
Sbjct: 594 TRTLIRVRVDDTARAERRVATLMGDKVEPRRKWIEKHVEFSMEDSQNILENENMMVEE 651



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  ++              ++      S  +          ++   +
Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            +  N D +V           +      F +      + + ++      +  +     K 
Sbjct: 487 VADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D 
Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDT 605

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 606 ARAERRVATLMGDKVEPRRKWIEKH 630


>gi|315302927|ref|ZP_07873658.1| DNA topoisomerase IV, B subunit [Listeria ivanovii FSL F6-596]
 gi|313628700|gb|EFR97102.1| DNA topoisomerase IV, B subunit [Listeria ivanovii FSL F6-596]
          Length = 655

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 264/658 (40%), Positives = 387/658 (58%), Gaps = 18/658 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GLDAV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNEYNDDSIQVLEGLDAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDEALAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I REG  YE  F N G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINREGATYEQRFKNGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               +NY+TL  RLRE +FL   + I LID+R       +  ++ G++ FV Y++  K  
Sbjct: 178 PTTSYNYETLSERLRESAFLLKGMLIQLIDERVG--MAESFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+ ++++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKEKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  
Sbjct: 475 HTVGAGVG-TEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593
           PPLY ++    + + ++Y   +E L+  +        I+ +     + +       ++ D
Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              + ++  D     ++              +  ++          N L       E+
Sbjct: 594 TRTLIRVRVDDTARAERRVATLMGDKVEPRRKWIEKHVEFSMEDNQNILENENMMVEE 651



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  ++              ++      S  +          ++   +
Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            +  N D +V           +      F +      + + ++      +  +     K 
Sbjct: 487 VADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D 
Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDT 605

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 606 ARAERRVATLMGDKVEPRRKWIEKH 630


>gi|50953931|ref|YP_061219.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950413|gb|AAT88114.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 663

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 263/594 (44%), Positives = 370/594 (62%), Gaps = 18/594 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               Y A+ IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DN++DE+L GYAD I 
Sbjct: 10  AEHDYGANEIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYADNIE 68

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V +  DGS  V DNGRGIP D H  +  S  EV++T LHAGGKF    Y VSGGLHGVG 
Sbjct: 69  VMILPDGSVRVFDNGRGIPVDEHPVQKKSTVEVVLTILHAGGKFGGGGYAVSGGLHGVGS 128

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L + ++R+G+++  S+ NG+   PL   G     TGT + F PS + F   
Sbjct: 129 SVVNALSTRLDVEVRRQGHVWRQSYRNGVPQAPLEQ-GEETEATGTTIVFWPSPETFETV 187

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------EPREITMFYKGGIEAFVSY 235
           +F+YDTL+ R ++++FLN  ++I++ D+R            EPR     Y+ G+  +V Y
Sbjct: 188 EFDYDTLRTRFQQMAFLNKGLRIAIADQRPVSAEGEADEESEPRGEVFLYEKGLTDYVHY 247

Query: 236 LDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           L+  KK        I  +       I++++AM+W   Y+E+V  + N I   +GGTH  G
Sbjct: 248 LNAAKKAEVVHDEIISFELEDTDRKIALEVAMQWTTSYNESVFTYANTINTHEGGTHEEG 307

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  +  Y  +    K    ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E
Sbjct: 308 FRAALTSLVNRYAREKNILKDKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTE 367

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            ++ V+    D L+ W + +P +AK I++K L A+  R AAR+AR+  RRKG+L+   +P
Sbjct: 368 AKAFVQKVAGDQLADWFDRNPNQAKEIIRKALQAATARIAARKARETARRKGLLESGGMP 427

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL DC  +DP  SE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L++
Sbjct: 428 GKLKDCQSKDPTLSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALAN 487

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+  +ITA G GIG+D FD  K RYHKI++M DADVDG HI TLLLT  FR M  LI  
Sbjct: 488 NEVQAMITAFGAGIGED-FDPEKARYHKIVLMADADVDGQHITTLLLTLLFRYMRPLIEL 546

Query: 532 GFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           G++Y+ +PPLY +       +YV  +   + +L     + +     +       
Sbjct: 547 GYVYLAQPPLYRLKWSNADDEYVYSDRDRDAFLAEGLAAGKRIPKDNGVQRYKG 600



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  +LWETT+NP+TR+LL+V + DA+  D++F+ LMG++VE RR FIQ+N
Sbjct: 595 VQRYKGLGEMDYKELWETTMNPETRTLLQVTLDDAAAVDEIFTTLMGEDVESRRSFIQKN 654

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 655 AKDVRFLDI 663


>gi|306827498|ref|ZP_07460781.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus pyogenes
           ATCC 10782]
 gi|304430296|gb|EFM33322.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus pyogenes
           ATCC 10782]
          Length = 650

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  EP      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDHDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +V+S
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  143 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 105/260 (40%), Gaps = 10/260 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 382 VRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 441

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       ++    N 
Sbjct: 442 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINY 501

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----DKIK 715
           D ++           +   + + +F  +Y R           L  L  +  G    +KI 
Sbjct: 502 DKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTEKIA 559

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                  L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ 
Sbjct: 560 YAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAER 619

Query: 776 LFSRLMGDEVEPRREFIQEN 795
             S LMGD+  PRR++I++N
Sbjct: 620 RVSVLMGDKAAPRRQWIEDN 639


>gi|251782581|ref|YP_002996884.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391211|dbj|BAH81670.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 650

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIRVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  EP      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDHDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +V+S
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGSD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 382 VRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 441

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       ++    N 
Sbjct: 442 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGSDFNLEDINY 501

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           D ++           +      F +      + +  +      +  +     K +     
Sbjct: 502 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKVSYA 561

Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+   
Sbjct: 562 WTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRV 621

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 622 SVLMGDKAAPRRQWIEDN 639


>gi|156888559|gb|ABU96684.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 641

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 272/621 (43%), Positives = 391/621 (62%), Gaps = 18/621 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIRVVINKDGSVSVADSGRGMPTGQH-VMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG +++LSI +P+   +F  QTK+KL S   R +VES
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAILSILVPEQHLQFEGQTKDKLGSPLARPIVES 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDK 610
             +    I   I D      +
Sbjct: 600 DPETRTLIRVTIDDLARAERR 620



 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712
            N D ++           +   + + +F  +Y R           L  L  +  G    +
Sbjct: 499 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 556

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           KI        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++
Sbjct: 557 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 616

Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795
           A+   S LMGD+  PRR++I++N
Sbjct: 617 AERRVSVLMGDKAAPRRQWIEDN 639


>gi|329938633|ref|ZP_08288029.1| DNA gyrase subunit B [Streptomyces griseoaurantiacus M045]
 gi|329302124|gb|EGG46016.1| DNA gyrase subunit B [Streptomyces griseoaurantiacus M045]
          Length = 691

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/658 (43%), Positives = 395/658 (60%), Gaps = 22/658 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + +YDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V
Sbjct: 35  SPAYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIDV 93

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 94  TILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 153

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + ++ +G  +   +  G+   PL V   A  +TGT VTF    DIF   +
Sbjct: 154 VVNALSTKVAVEVRTDGYRWTQDYKLGVPTAPL-VKNEATEETGTSVTFWADGDIFETTE 212

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230
           ++++TL  R +E++FLN  + I L D+R                  E + +T  Y+GGI 
Sbjct: 213 YSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGADEKEEVKSVTYHYEGGIV 272

Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            FV Y   R  + +  S I I+       +S+++AM+WN+GY E V  F N I   +GGT
Sbjct: 273 DFVKYLNARKGEIVHPSVIDIEAEDKDRMLSLEVAMQWNNGYSEGVYSFANTIHTHEGGT 332

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  QTK KL
Sbjct: 333 HEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKL 392

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRKG+L+ 
Sbjct: 393 GNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRRKGLLES 452

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+AR DK
Sbjct: 453 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKARIDK 512

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L +QEI  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  
Sbjct: 513 ILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 571

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+  G +++ +PPL+ I  G+        +   D LI    +    +  DS         
Sbjct: 572 LVEAGHVFLSRPPLFKIKWGRDDFEYAYSDRERDALIELGRNNGKRVRDDSIQRFKGLGE 631

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            N  +  +    +              QA          D E   +   + A  + F+
Sbjct: 632 MNAEELRITTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRAFIQRNAKDVRFL 689



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR      +  S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 605 DALIELGRNNGKRVRDDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDDAAQADDLF 664

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 665 SVLMGEDVEARRAFIQRNAKDVRFLDI 691


>gi|300172307|ref|YP_003771472.1| DNA gyrase subunit B [Leuconostoc gasicomitatum LMG 18811]
 gi|299886685|emb|CBL90653.1| DNA gyrase, B subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 669

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 277/572 (48%), Positives = 384/572 (67%), Gaps = 6/572 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + N     Y+AD IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A
Sbjct: 27  TVNASAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 85

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             ITVT+  D S TV+D+GRGIP D+  + G SA E + T LHAGGKF    YKVSGGLH
Sbjct: 86  SHITVTIEKDNSITVTDDGRGIPVDIQTKTGKSALETVFTVLHAGGKFGGGGYKVSGGLH 145

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSD 180
           GVG SVVNALS+ L +R+ R+  +Y M F  G ++  +V        D GT V F P SD
Sbjct: 146 GVGASVVNALSTNLDVRVIRDNQVYYMDFKLGRVNTSIVKLDEKPTIDRGTIVHFNPDSD 205

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FNY+TL  R+REL+FLN  ++IS+ D R   P   +  ++GGI+ +V YL+  
Sbjct: 206 IFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRLEVPATESFHFEGGIKEYVGYLNSE 265

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +   P+ ++G  + I ++ A+++     +++  F NNI   +GGTH +G ++ALTR 
Sbjct: 266 KTVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFANNINTYEGGTHETGFKTALTRV 325

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K+   K +  S+ G+D REG T+++SIK PDP+F  QTK KL +S+ R   +  
Sbjct: 326 INDYGRKNGQLKDNAESLTGEDVREGVTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 385

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++  S ++ E+P+ AK IV K + A   R AA+RAR++TR++  L+I +LPGKLAD + 
Sbjct: 386 FSETFSRFMMENPIVAKQIVDKGILAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 445

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNVE+A  D++L ++EI +L T
Sbjct: 446 NDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVEKATLDRVLGNEEIRSLFT 505

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTG G D F++ K  YHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G++YI +P
Sbjct: 506 AMGTGFG-DDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAGYIYIAQP 564

Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLS 569
           PLYG+     K+ +Y+  +E LE YL     +
Sbjct: 565 PLYGVALGNSKTREYLDTDEELEAYLTQLPSN 596



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QL +TT++P  R LLRV  +DA  AD +F  LMGD+V PRREFI+EN
Sbjct: 601 VQRYKGLGEMDFDQLADTTMDPINRRLLRVDPSDAEAADSIFDMLMGDDVAPRREFIEEN 660

Query: 796 SLPS-ALDI 803
           ++    LDI
Sbjct: 661 AVFVENLDI 669


>gi|312137523|ref|YP_004004859.1| DNA gyrase subunit b [Rhodococcus equi 103S]
 gi|311886862|emb|CBH46170.1| DNA gyrase subunit B [Rhodococcus equi 103S]
          Length = 678

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/582 (43%), Positives = 358/582 (61%), Gaps = 39/582 (6%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+   + ++++Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ 
Sbjct: 1   MAAQKSDKSNTYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GYA  + VT+  DG   V D+GRGIP  +H   G    EV+MT+LHAGGKF+  +Y VSG
Sbjct: 60  GYASKVEVTMLEDGGIQVVDDGRGIPVAMHAS-GAPTVEVVMTQLHAGGKFDSDAYAVSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG+SVVNALS+ +++ I  +G  +  ++ +     PL V G    +TGT V F   
Sbjct: 119 GLHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKP-GPL-VQGEPTTETGTTVRFWAD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---------------- 222
            +IF    +N++T+  RL+E++FLN  + I+L D+R  E                     
Sbjct: 177 PEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTEDVVPVTAEAPKTATET 236

Query: 223 ----------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                             Y GG+E +V +++R K+ +  S +          +++AM+WN
Sbjct: 237 EEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGHELEIAMQWN 296

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K     + GDD REG 
Sbjct: 297 SGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELTGDDIREGL 356

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +++S+K+ +P+F  QTK KL ++EV+S V+   N+ ++ W E +P +AK IV K + ++
Sbjct: 357 AAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTIVTKAVSSA 416

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR   
Sbjct: 417 QARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAKSGRDSM 476

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  +     KLRYHKI++M DA
Sbjct: 477 YQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIC-KLRYHKIVLMADA 535

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
           DVDG HI TLLLT  FR M  L+  G +Y+ +PPLY +   K
Sbjct: 536 DVDGQHIATLLLTLLFRFMRPLVEQGHVYLAQPPLYKLKWQK 577



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+   + G+K I+    +QRYKGLGEMNA +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 593 LLEAGLAAGKK-INKDDGIQRYKGLGEMNAKELWETTMDPSVRVLRQVTLDDAAAADELF 651

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FI  N+     LD+
Sbjct: 652 SVLMGEDVEARRSFITRNAKDVRFLDV 678


>gi|315194271|gb|EFU24664.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 665

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 265/598 (44%), Positives = 370/598 (61%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +  G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIRAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIRAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|156888561|gb|ABU96685.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156889070|gb|ABU96686.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 641

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 272/621 (43%), Positives = 391/621 (62%), Gaps = 18/621 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIRVVINKDGSVSVADSGRGMPTGQH-VMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG +++LSI +P+   +F  QTK+KL S   R +VES
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAILSILVPEQHLQFEGQTKDKLGSPLARPIVES 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDK 610
             +    I   I D      +
Sbjct: 600 DPETRTLIRVTIDDLARAERR 620



 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712
            N D ++           +   + + +F  +Y R           L  L  +  G    +
Sbjct: 499 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 556

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           KI        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++
Sbjct: 557 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 616

Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795
           A+   S LMGD+  PRR++I++N
Sbjct: 617 AERRVSVLMGDKAAPRRKWIEDN 639


>gi|184153407|ref|YP_001841748.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri JCM 1112]
 gi|183224751|dbj|BAG25268.1| topoisomerase IV B subunit [Lactobacillus reuteri JCM 1112]
          Length = 669

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 259/599 (43%), Positives = 369/599 (61%), Gaps = 17/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       YDA SIQ+LKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKEEVK--YDASSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119
            D I + +  D + TV D+GRG+P  +H   G    EVIMT LHAGGKF Q   YK SGG
Sbjct: 58  GDEINIIIEADNAITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQSDGYKTSGG 116

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSS L L I R+   Y+  F + G     L   G    + GT V+F P 
Sbjct: 117 LHGVGASVVNALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS   ++Y+TL +RLRE +FL   ++I+L DKR+ + ++    +  GI+ FVSYL+ 
Sbjct: 177 PKIFSTTVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFADGIQEFVSYLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             K ++   +   G +D + +++A ++NDGY E++L F NN+   DGGTH +G RSA T+
Sbjct: 237 G-KDVLGKTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y +K    K + +++ G D REG T+V+S+++P+   +F  QTK+KL + E R +V
Sbjct: 296 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTLEARKIV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414
           ++ V++ L+  L E+   A+++++K L A   R+AAR+AR+  R  ++      +L GKL
Sbjct: 356 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+
Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G G + F++    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +
Sbjct: 476 NTIIYTVGAGAGSE-FNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKI 534

Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           YI  PPLY + R      ++ Y    E L                    G ++ + L  
Sbjct: 535 YIALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMG-KGAQLQRFKGLGEMNADQLWE 592



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++              +  +    S  +          ++   ++     
Sbjct: 378 IRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQSKNAKKNELFLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  +V    +L   +  +   +   ++   +N 
Sbjct: 438 GSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFNVEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      I + +I      +  L    G K  IT  
Sbjct: 498 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQRGRGAKTNITYA 557

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QR+KGLGEMNA QLWETT+NPDTR+L++V+I DA  A+   
Sbjct: 558 WTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPDTRTLIQVRIEDAELAERRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMG++VEPRRE+I+EN
Sbjct: 618 TTLMGNKVEPRREWIEEN 635


>gi|81427621|ref|YP_394618.1| DNA gyrase, B subunit [Lactobacillus sakei subsp. sakei 23K]
 gi|78609260|emb|CAI54307.1| DNA gyrase, B subunit [Lactobacillus sakei subsp. sakei 23K]
          Length = 658

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 283/638 (44%), Positives = 410/638 (64%), Gaps = 10/638 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +   +  SYDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A
Sbjct: 16  AKEERAKSYDASQIQVLEGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIIDNGIDEALAGFA 74

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V +  D S TV+D+GRGIP  +  + G SA E + T LHAGGKF    YKVSGGLH
Sbjct: 75  TEINVVVEPDNSITVTDDGRGIPVGIQAKTGKSALETVFTILHAGGKFGGGGYKVSGGLH 134

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSD 180
           GVG SVVNALS+ L   + + G  Y + F  G +  P+ + G A  ++ GT+V F+P  D
Sbjct: 135 GVGASVVNALSTELDAVVTQGGKRYYIDFKRGKVQTPMKMIGDAPEHEHGTKVHFVPDPD 194

Query: 181 IFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF+      D  L  R+REL+FLN  ++++  DKR+    ++   Y+GGI+++V +LD  
Sbjct: 195 IFTETTIYDDKILTTRIRELAFLNKGLKLTFTDKRADTHEKLEFHYEGGIKSYVEFLDEK 254

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L+  PI ++G ++ I++++A+++ + Y  N+L F NNI   +GGTH SG ++ALTR 
Sbjct: 255 KETLLDEPIYVEGEQNGITVEVALQYTNDYRTNLLTFANNIHTYEGGTHESGFKTALTRV 314

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  K    K    ++ G+D REG T+V+S+K PDP+F  QTK KL +++ RSV +  
Sbjct: 315 INDYATKQNIFKASDANLSGEDVREGLTAVVSVKHPDPQFEGQTKTKLGNADARSVTDRM 374

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            +D  + +L E+P  A+ IV K   A+  R AA+RAR++TR+K  L+I++LPGKLAD S 
Sbjct: 375 FSDHFTKFLMENPSIARQIVDKGSLAARARLAAKRAREVTRKKNGLEISNLPGKLADNSS 434

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP+ SELF+VEGDSAGGSAK GRSR  QAILP+RGKILNVE+A  +K+L+++EI TL T
Sbjct: 435 KDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMEKILANEEIRTLFT 494

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTG GQ+ FD+ K RYHK+IIMTDADVDGAHIRTLLLT F+R M  ++  G++YI +P
Sbjct: 495 AMGTGFGQE-FDVEKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQP 553

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598
           PLY + +GK ++Y+  +E L+D L     S +         G +  + L         +D
Sbjct: 554 PLYRVKQGKMMRYIDSDEELQDVLGTLQPSPKPEVQRYKGLGEMDASQLWET-----TMD 608

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              +     + +   E   I  +   +  +   + +  
Sbjct: 609 PENRRMLRVNVEDAEEADQIFEMLMGDRVEPRRLFIEE 646



 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 7/180 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +    ++      +     + +         L+      V    +   +
Sbjct: 472 ILNVEKASMEKILANEEIRTLFTAMGTGFGQEFDVEKARYHKLIIMTDADVDGAHI--RT 529

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSLLDTI--FSIGRKGISM 736
            + +   +Y R                     K    I     L D +       K   +
Sbjct: 530 LLLTLFYRYMRPIVEAGYVYIAQPPLYRVKQGKMMRYIDSDEELQDVLGTLQPSPK-PEV 588

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEM+ASQLWETT++P+ R +LRV + DA +AD +F  LMGD VEPRR FI+EN+
Sbjct: 589 QRYKGLGEMDASQLWETTMDPENRRMLRVNVEDAEEADQIFEMLMGDRVEPRRLFIEENA 648


>gi|31544928|ref|NP_853506.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(low)]
 gi|33860162|sp|P47720|GYRB_MYCGA RecName: Full=DNA gyrase subunit B
 gi|31541775|gb|AAP57074.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(low)]
 gi|284931006|gb|ADC30945.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(high)]
          Length = 648

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/598 (40%), Positives = 359/598 (60%), Gaps = 14/598 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +N +   Y + SI++L+GL AV+KRP MYIG TD + GLHHMI+E++DN++DE + GY  
Sbjct: 2   NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTD-QKGLHHMIWEIIDNSVDEMMAGYGT 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + +TL  +    V D+GRGIP D+H++   S  E ++T LHAGGKF+  +Y +SGGLHG
Sbjct: 61  TVKLTLKDNYLVEVEDDGRGIPVDIHEKTNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALSS  K+ + R+  I+ + F + G+   PL + G+     GT + F+P   I
Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVPLKPLEIIGTDSKKQGTRIQFVPDFSI 180

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
               +++   +  R+ +L+FLN  ++    D+R+ +  +    Y+GGI+ +V  L+  K+
Sbjct: 181 MEQFEYDETIIADRIEQLAFLNKGIKFIFNDERTDKKTKQEWLYEGGIKQYVENLNASKE 240

Query: 242 PLMQSPIRIQGS----------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           P++   I  +               + +++A ++ +GY+ +   F NNI    GGTH  G
Sbjct: 241 PIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQGGTHEEG 300

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++AL + I  Y  +    K+    +  +D  EG T+++SIK  +P++  QTK++L ++E
Sbjct: 301 FKNALYKIINRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKDRLGNTE 360

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR    S V++ L  +  E+P EA  I  K + A   R  +  A   + RK   + ASLP
Sbjct: 361 VREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAA-LESARKSPFESASLP 419

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC+ +D + SEL++VEGDSAGGSAK GR R  QAILPLRGK+LNVE+A  +K+  +
Sbjct: 420 GKLADCTTKDMEISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHEKIFKN 479

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +EI TLITA+G G+    F ++K+RY+KIIIMTDADVDGAHIR LLLTFFFR M  LI  
Sbjct: 480 EEIRTLITAIGAGV-NPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFPLIEK 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           G +YI +PPLY ++  K  +Y+  +  LE++                 G +    L  
Sbjct: 539 GHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQNPNVRYELQRYKGLGEMDDVQLWE 596



 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 5/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ--EQFVLE 678
           V N E      +    ++   +  I       +       + ++      V      +L 
Sbjct: 465 VLNVEKANHEKIFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILL 524

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738
            +  F             I +  L  +S         I     L +           +QR
Sbjct: 525 LTFFFRHMFPLIEKGHVYIAQPPLYRVSYNKQNKY--IYSDAQLEEWKNQNPNVRYELQR 582

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P+ R+LL+V I DA+ AD  FS LMGDEV PRR+FI++N+  
Sbjct: 583 YKGLGEMDDVQLWETTMDPEKRTLLKVSINDAANADKTFSLLMGDEVSPRRDFIEKNAKS 642

Query: 799 S-ALD 802
              +D
Sbjct: 643 VKNID 647


>gi|46907513|ref|YP_013902.1| DNA topoisomerase IV subunit B [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|217964571|ref|YP_002350249.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes HCC23]
 gi|226223889|ref|YP_002757996.1| DNA gyrase-like protein (subunit B) [Listeria monocytogenes
           Clip81459]
 gi|254824653|ref|ZP_05229654.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-194]
 gi|254852660|ref|ZP_05242008.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-503]
 gi|254932397|ref|ZP_05265756.1| DNA topoisomerase IV subunit B [Listeria monocytogenes HPB2262]
 gi|254993571|ref|ZP_05275761.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-064]
 gi|255520561|ref|ZP_05387798.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-175]
 gi|300765323|ref|ZP_07075307.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL N1-017]
 gi|46880781|gb|AAT04079.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|217333841|gb|ACK39635.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes HCC23]
 gi|225876351|emb|CAS05060.1| Putative DNA gyrase-like protein (subunit B) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605977|gb|EEW18585.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-503]
 gi|293583953|gb|EFF95985.1| DNA topoisomerase IV subunit B [Listeria monocytogenes HPB2262]
 gi|293593891|gb|EFG01652.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-194]
 gi|300514006|gb|EFK41069.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL N1-017]
 gi|307570865|emb|CAR84044.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes L99]
 gi|328468575|gb|EGF39575.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 1816]
 gi|328475129|gb|EGF45913.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 220]
 gi|332311731|gb|EGJ24826.1| DNA topoisomerase 4 subunit B [Listeria monocytogenes str. Scott A]
          Length = 655

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 261/658 (39%), Positives = 386/658 (58%), Gaps = 18/658 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL++DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHVDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNY+TL  RLRE +FL   + I LID+R          ++ G++ FV Y++  K  
Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  
Sbjct: 475 HTVGAGVG-TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593
           PPLY ++    + + ++Y   +E L+  +        I+ +     + +       ++ D
Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              + ++  D     ++              +  ++          N L       E+
Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDSQNILENENMMVEE 651



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  ++              ++      S  +          ++   +
Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
               N D +V           +      F +      + + ++      +  +     K 
Sbjct: 487 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+
Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 606 ARAERRVATLMGDKVEPRRQWIEKH 630


>gi|49486197|ref|YP_043418.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244640|emb|CAG43071.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 665

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 265/598 (44%), Positives = 371/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+    ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQADRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + ++R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQADRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|118586892|ref|ZP_01544326.1| DNA topoisomerase IV, B subunit [Oenococcus oeni ATCC BAA-1163]
 gi|118432724|gb|EAV39456.1| DNA topoisomerase IV, B subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 674

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 260/670 (38%), Positives = 377/670 (56%), Gaps = 14/670 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +  SY+   I+IL+GL+AV+ RP MYIG TD   GLHH+++E++DNA+DE L GY
Sbjct: 8   MTKK-KEISYNESDIKILEGLEAVRVRPGMYIGSTD-TRGLHHLVWEIVDNAVDEILAGY 65

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S TV D+GRG+P  +H   G    EVI+T LHAGGKF Q  YK +GGL
Sbjct: 66  GDSIKVIIHQDNSITVVDHGRGMPVGMHAS-GKPTPEVILTVLHAGGKFGQGGYKTAGGL 124

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS  L + I R+G  Y  +F N G     L   G   + TGT +TF P  
Sbjct: 125 HGVGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDP 184

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + + T+  RLRE +FL   ++I+LID+R          YK GI+ FV YL+  
Sbjct: 185 TIFSTTVYKFQTIADRLRESAFLLKGIKITLIDERPDPQIIEEYQYKDGIKEFVDYLNEG 244

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K ++   +   G +  I +++A ++NDGY E +L F NN+   DGGTH +G++ A T+ 
Sbjct: 245 -KAVIGKVMYFDGEQQGIEVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGMKVAWTKA 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K+   K+   +  G D REG + V+++++P+   +F  QTKEKL + E RS V 
Sbjct: 304 FNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTIEARSAVG 363

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLA 415
           S + + L  +L E+   A+ +V+K L A   R AAR+ARD +R             GKL 
Sbjct: 364 SVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKGKEFLLSGKLT 423

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +D  K ELFLVEGDSAGGSAKQGRSR+ QA+LPLRGK+LN E+A  +++L ++EI 
Sbjct: 424 PAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEELLKNEEIS 483

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F+I    Y+K+IIMTDAD DGAHI+TLLLTFF++ M  L+  G +Y
Sbjct: 484 TMIYTIGAGVG-TDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLVEAGRVY 542

Query: 536 IIKPPLYGI----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY +     + K  ++    E L +     +    I  +     + +       +
Sbjct: 543 IALPPLYKVTSGAKKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGEMDANLLWETTM 602

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
           D   +    +K       +  +   +   V       E NV+ +   A  +      ++ 
Sbjct: 603 DPDQRTLIRVKIEDAALAEKRVTILMGDQVAPRRKWIEDNVAFSLDEAGSILDTVNGNDG 662

Query: 652 SWHGSINNSD 661
           ++H  ++  +
Sbjct: 663 TYHPELDKKE 672



 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 57/87 (65%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               K +       L  +     +G ++ RYKGLGEM+A+ LWETT++PD R+L+RVKI 
Sbjct: 556 KKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGEMDANLLWETTMDPDQRTLIRVKIE 615

Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN 795
           DA+ A+   + LMGD+V PRR++I++N
Sbjct: 616 DAALAEKRVTILMGDQVAPRRKWIEDN 642


>gi|21910160|ref|NP_664428.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS315]
 gi|21904353|gb|AAM79231.1| putative DNA topoisomerase IV subunit B [Streptococcus pyogenes
           MGAS315]
          Length = 650

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 273/647 (42%), Positives = 398/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G++Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +V+S
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712
            N D ++           +   + + +F  +Y R           L  L  +  G    +
Sbjct: 499 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 556

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           KI        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++
Sbjct: 557 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 616

Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795
           A+   S LMGD+  PRR++I++N
Sbjct: 617 AERRVSVLMGDKAAPRRQWIEDN 639


>gi|225570591|ref|ZP_03779616.1| hypothetical protein CLOHYLEM_06693 [Clostridium hylemonae DSM
           15053]
 gi|225160604|gb|EEG73223.1| hypothetical protein CLOHYLEM_06693 [Clostridium hylemonae DSM
           15053]
          Length = 650

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 250/620 (40%), Positives = 357/620 (57%), Gaps = 12/620 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YDADSI IL+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L G  D I 
Sbjct: 13  KKNTYDADSISILEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGCCDEIR 71

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGS TVSDNGRG+P  LH + G+SA  ++ T LHAGGKF+  SYK SGGLHGVG 
Sbjct: 72  VTLEKDGSATVSDNGRGVPVGLHAK-GVSAERIVYTTLHAGGKFDDSSYKTSGGLHGVGS 130

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV----TGSAGNDTGTEVTFLPSSDI 181
           SVVNALS+++ +++ REG I+   +  G     L             TGT++ FLP   I
Sbjct: 131 SVVNALSAYMDVQVSREGYIHHDRYERGKPVIELEDGLLPKTGKTKKTGTKINFLPDDTI 190

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F  D ++ R+ E ++LN ++ I   D R   P  I      GI  F+  L++  +
Sbjct: 191 FEKTRFRADEVKSRMHETAYLNPTLTIIFEDLRGETPERIVYHEPDGILGFIKELNQKNE 250

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            +   P+  +G  + I ++ A ++ + +HENVL F NNI   +GGTHL+G ++  T  + 
Sbjct: 251 AVH-EPVYFKGVAEGIEVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVMN 309

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  +    K+   +  G D R G T+++SIK PDPRF  QTK KL + +    V    N
Sbjct: 310 QYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAAKAVSKVTN 369

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D ++ + + +    K ++     A+ +R    +A+     K      S  GKLA+C  RD
Sbjct: 370 DEITRYFDRNLDNLKKVIACAEKAAKIRKTEEKAKTNLLTKQKYSFDS-NGKLANCESRD 428

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
             + E+F+VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A 
Sbjct: 429 ASRCEIFIVEGDSAGGSAKTARDRMFQAILPIRGKILNVEKASIDKILANAEIKTMINAF 488

Query: 482 GTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           G G  +   + FDI+ LRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +Y+  
Sbjct: 489 GCGFSEGYGNDFDISGLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVAM 548

Query: 539 PPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           PPLY  I +    +Y+ D+++LE Y         ++ +     + ++      ++   ++
Sbjct: 549 PPLYKAIPKKGEEEYLYDDKALERYRRKHDGPFTLQRYKGLGEMDAQQLWETTLNPETRL 608

Query: 598 DKLIKDFYPNHDKTFIEQAV 617
            K I+           E  +
Sbjct: 609 LKRIEIEDARMASGVTEMLM 628



 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 51/69 (73%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTLNP+TR L R++I DA  A  +   LMG EV PRR FI E
Sbjct: 582 TLQRYKGLGEMDAQQLWETTLNPETRLLKRIEIEDARMASGVTEMLMGTEVPPRRTFIYE 641

Query: 795 NSLPSALDI 803
           N+  + LDI
Sbjct: 642 NATEAELDI 650


>gi|50365125|ref|YP_053550.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1]
 gi|50363681|gb|AAT75666.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1]
          Length = 647

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 245/601 (40%), Positives = 361/601 (60%), Gaps = 15/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  ++   YD  +IQ+L+GL+AV+KRP MYIG TD   GLHH+++E++DN+IDE+L GY
Sbjct: 1   MAKEVK---YDESAIQVLEGLEAVRKRPGMYIGSTD-VRGLHHLVWEIVDNSIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VTL  +GS TV+DNGRG+P  +H   G    EVI + LHAGGKF    YK SGGL
Sbjct: 57  CTEINVTLEKNGSVTVADNGRGVPIGMHS-TGRPTPEVIFSVLHAGGKFGGSGYKTSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN-PLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS    + I R+  + E+ F NG   N PL   G   N TGT V FLP  
Sbjct: 116 HGVGSSVVNALSKKFNVTIYRDKKVNEIEFTNGGKLNIPLTEVG-TTNKTGTVVNFLPDD 174

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF+   FN+ T+  RL+E + LNS ++I++ DK + +  E     + G+  FV  L   
Sbjct: 175 SIFNTTKFNFTTISERLKESALLNSGLKITISDKVNDKFVEYQF--ENGLVEFVKELSSE 232

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +  P+ I G    I+ ++ +++ + ++E +L F NN+   DGGTH++G ++ L R 
Sbjct: 233 FT-HITDPVVITGESKRIASEICIQYTEDFNETILGFANNVKTGDGGTHITGFKTGLVRA 291

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           I  Y + +   K     +  +D REG  +++++K+P+    +  QTK KL + + ++ VE
Sbjct: 292 INDYAKNNKILKDKDPRLDSNDLREGLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKTAVE 351

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-RKGVLDIASLPGKLAD 416
               D ++ WL E+ + A  I++K + A   R+ AR+AR   R  KG     ++ GKL  
Sbjct: 352 QVTYDFMNFWLIENKVPATKIIEKAMLARRAREEARKARQAIRDSKGKKTTRAMLGKLTP 411

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              R  + +EL+LVEGDSAGGSAK GR R  QAILPLRGK++N E+A+  +++ ++EI T
Sbjct: 412 AQGRKKEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLTELMKNEEIQT 471

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +ITA+G GIG   FD++ + Y K+IIMTDAD DGAHI+TLLLTFF+R M  LI N  ++I
Sbjct: 472 IITAIGAGIG-QDFDVSDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFI 530

Query: 537 IKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
             PPLY +    +   Y+ DE+ L D+    +   EI+ +     + +       ++ A 
Sbjct: 531 ALPPLYKLTFSDRKFIYLWDEQELADFAKTATKKYEIQRYKGLGEMNADQLWETTMNPAQ 590

Query: 596 K 596
           +
Sbjct: 591 R 591



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 3/210 (1%)

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645
             I++   ++           +    QA++     V N E  +   +    ++   +  I
Sbjct: 417 KEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLTELMKNEEIQTIITAI 476

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
                + +  S  N   ++           +      F +      I +  +      + 
Sbjct: 477 GAGIGQDFDVSDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLY 536

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
            L  +  K         L        K   +QRYKGLGEMNA QLWETT+NP  R L+ V
Sbjct: 537 KLTFSDRKFIYLWDEQELADFAKTATKKYEIQRYKGLGEMNADQLWETTMNPAQRKLIVV 596

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQEN 795
            I DA  A+  F  LMG++ E R+ +IQEN
Sbjct: 597 TIEDALMAEKSFRTLMGEDAEKRKVWIQEN 626


>gi|195977899|ref|YP_002123143.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974604|gb|ACG62130.1| DNA gyrase subunit B GyrB [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 650

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 276/628 (43%), Positives = 401/628 (63%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M +  +        YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MVEENKQLEDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASHIQVFIEADNSITVIDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +R+ + G+I+   F  G + + L +     + TGT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVRVYKNGHIHYQEFRRGAVVDDLAII-GTTDVTGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F+Y  L  R++EL+FLN  ++IS+ DKR+   RE    Y+GGI ++V+
Sbjct: 179 TPDPEIFTETTEFDYQVLAKRIQELAFLNRGLKISITDKRAGLEREEHFHYEGGIGSYVA 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+  K  +  +PI   G  + I++++AM++  GYHE V+ F NNI   +GGTH  G R+
Sbjct: 239 FLNDKKDVIFDTPIYSDGELEGITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYAKKAKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++ L  +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEALQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D  ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G D FD+++ RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAD-FDVSRARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++     +   +       + E      S+  I +      +DD 
Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGVNQEEELKAALERHSTGRSRPTIQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMDPDNRLMARVTVDDAAEADRI 623



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 58/74 (78%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           GR   ++QRYKGLGEM+  QLWETT++PD R + RV + DA++AD +F  LMGD VEPRR
Sbjct: 577 GRSRPTIQRYKGLGEMDDHQLWETTMDPDNRLMARVTVDDAAEADRIFDMLMGDRVEPRR 636

Query: 790 EFIQENSLPSALDI 803
           EFI+EN++ S LDI
Sbjct: 637 EFIEENAVYSTLDI 650


>gi|139473931|ref|YP_001128647.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes str.
           Manfredo]
 gi|134272178|emb|CAM30423.1| topoisomerase IV subunit B [Streptococcus pyogenes str. Manfredo]
          Length = 650

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I  ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G+ D
Sbjct: 5   KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGLHG
Sbjct: 64  DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           VG SVVNALS+WL++ I R+G +Y   F N G     L   G+A    +GT VTF+P   
Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K
Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +
Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +VES
Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARHIVES 361

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416
            V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GKL  
Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T
Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI
Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591
             PPLY ++    + + + Y   +  LED          I       G ++ N L     
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    I   I D      +  +     +       +  +  +L  
Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 8/262 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DK 713
            N D ++           +      F +      + +  +    L  L  +  G    +K
Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY-IALPPLYKMSKGKGKTEK 557

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A
Sbjct: 558 IAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARA 617

Query: 774 DDLFSRLMGDEVEPRREFIQEN 795
           +   S LMGD+  PRR++I++N
Sbjct: 618 ERRVSVLMGDKAAPRRQWIEDN 639


>gi|313664969|ref|YP_004046840.1| DNA gyrase, B subunit [Mycoplasma leachii PG50]
 gi|312949334|gb|ADR23930.1| DNA gyrase, B subunit [Mycoplasma leachii PG50]
          Length = 634

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/565 (43%), Positives = 363/565 (64%), Gaps = 7/565 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A+SI++LKGL+AV+ RP MYIG T   +GLHH+++E+LDN+IDE++ GYAD+I V
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  +    + DNGRGIP  ++ +   SA  ++ T+LHAGGKF+ ++YK+SGGLHGVG S
Sbjct: 61  TITKENEVIIQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS ++++ + R    Y   F  G    + L   G   +  GT+V F P  +IF   
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGQT-DLRGTKVKFKPDPEIFKET 179

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y+ +++++++L+FLN  ++I+L D+R  +  E       GI  ++   +  K  + 
Sbjct: 180 VVFDYEVIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +   +    +NI +++A+++N  Y EN++ F NNI   +GGTH  GL+ AL R I  Y 
Sbjct: 238 PNIFYVDSKYENIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINRYA 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +    + K       DD +EG   +LS++  DP++  QTK KL + + +  V   + +  
Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L + P +AK I+ K ++A   R AA+RAR+ TRRK  LD  SLPGKLADC  +D   
Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQRAREETRRKSALDSFSLPGKLADCETKDSNI 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER    +  S+ EI +++TA+GTG
Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIVTAVGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I ++  D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M  L+ NG +YI +PPLY I
Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569
             GK + Y   +  L++   N+  +
Sbjct: 537 EAGKKIAYAYTDNQLDELKNNEFNN 561



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 4/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E      +++ + +  +    ++    S      +V      V    +    
Sbjct: 450 VLNVERVTEARAFSNNEIKSIVTAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738
             F +      + +  I       L  I  G KI      + LD + +     +  ++QR
Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDNQLDELKNNEFNNLKYTIQR 568

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P  R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+  
Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628

Query: 799 S-ALD 802
              +D
Sbjct: 629 VENID 633


>gi|225868765|ref|YP_002744713.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus]
 gi|225870279|ref|YP_002746226.1| DNA gyrase subunit B [Streptococcus equi subsp. equi 4047]
 gi|225699683|emb|CAW93393.1| DNA gyrase subunit B [Streptococcus equi subsp. equi 4047]
 gi|225702041|emb|CAW99644.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus]
          Length = 650

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 275/628 (43%), Positives = 401/628 (63%), Gaps = 11/628 (1%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M +  +        YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MVEENKQLEDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFASHIQVFIEADNSITVIDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L +R+ + G+I+   F  G + + L +     + TGT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVRVYKNGHIHYQEFRRGAVVDDLAII-GTTDVTGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F+Y  L  R++EL+FLN  ++IS+ DKR+   RE    Y+GGI ++V+
Sbjct: 179 TPDPEIFTETTEFDYQVLAKRIQELAFLNRGLKISITDKRAGLEREEHFHYEGGIGSYVA 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+  K  +  +PI   G  + I++++AM++  GYHE V+ F NNI   +GGTH  G R+
Sbjct: 239 FLNDKKDVIFDTPIYSDGELEGITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  
Sbjct: 299 ALTRVINDYAKKAKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +     ++ L  +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKL
Sbjct: 359 ITNRLFSEALQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  D  ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L TA+GTG G + FD+++ RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++
Sbjct: 479 RSLFTAMGTGFGAE-FDVSRARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI +PP+YG+  G  ++     +   +       + E      S+  I +      +DD 
Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGVNQEEELKAALERHSTGRSRPTIQRYKGLGEMDDH 595

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +  +        +  ++ A  +   
Sbjct: 596 QLWETTMDPDNRLMARVTVDDAAEADRI 623



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 58/74 (78%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           GR   ++QRYKGLGEM+  QLWETT++PD R + RV + DA++AD +F  LMGD VEPRR
Sbjct: 577 GRSRPTIQRYKGLGEMDDHQLWETTMDPDNRLMARVTVDDAAEADRIFDMLMGDRVEPRR 636

Query: 790 EFIQENSLPSALDI 803
           EFI+EN++ S LDI
Sbjct: 637 EFIEENAVYSTLDI 650


>gi|228476082|ref|ZP_04060790.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis SK119]
 gi|228269905|gb|EEK11385.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis SK119]
          Length = 666

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 260/599 (43%), Positives = 369/599 (61%), Gaps = 17/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  +  + Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MATKM-TNHYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N D S +V DNGRG+PT +H   G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINEDNSISVEDNGRGMPTGMHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+G IY+ SF + GI  + L+  G             P S
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGQIYKQSFKDGGIPTSGLMKAGKTKKTGTKVTF-KPDS 176

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF     FN+DTL  RL+E +FL  +++I+L D R  + RE    Y+ GI+ FVSY++ 
Sbjct: 177 SIFKATTSFNFDTLSERLQESAFLLKNLKITLKDLRDGKEREDVYHYEEGIKEFVSYINE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G+ + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 GKEVLH-DVTTFTGAANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V
Sbjct: 296 VFNDYARRINELKDKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S V++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL
Sbjct: 356 DSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+A+ + +  ++EI
Sbjct: 416 TPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIFKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G D F +    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G +
Sbjct: 476 NTIIHTIGAGVGND-FKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +I  PPLY +     + K ++Y   ++ LE           I       G ++   L  
Sbjct: 535 FIALPPLYKLEKGKGKSKKVEYAWTDDELEKLQKQLGKGF-ILQRYKGLGEMNPEQLWE 592



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     ++  ++  L        SKN 
Sbjct: 364 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 422

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                ++   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 423 --TEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIFKNEEINTIIH 480

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 481 TIGAGVGNDFKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQAGRVFIALPP 540

Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L        K++       L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 541 LYKLEKGKGKSKKVEYAWTDDELEKLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 600

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV+I D  ++    + LMGD+V PRRE+I+ +
Sbjct: 601 TLIRVQIDDEVRSSKRVTTLMGDKVAPRREWIENH 635


>gi|315107489|gb|EFT79465.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA1]
          Length = 685

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 270/578 (46%), Positives = 364/578 (62%), Gaps = 13/578 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L
Sbjct: 37  SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 95

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGVG SVV
Sbjct: 96  LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 155

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186
           NAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +IF    
Sbjct: 156 NALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDYEGTTVRFQPSDEIFDAIV 215

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240
           F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +L   +
Sbjct: 216 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 275

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R+ALT 
Sbjct: 276 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 335

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +S V+ 
Sbjct: 336 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 395

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417
            +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPGKL DC
Sbjct: 396 ALNEKLSDWFEENPNEGKSIVQKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 455

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+ I ++
Sbjct: 456 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 515

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G +Y+ 
Sbjct: 516 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 574

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 575 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612



 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 677 AKDVRFLDI 685


>gi|284931763|gb|ADC31701.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. F]
          Length = 648

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/598 (40%), Positives = 359/598 (60%), Gaps = 14/598 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +N +   Y + SI++L+GL AV+KRP MYIG TD + GLHHMI+E++DN++DE + GY  
Sbjct: 2   NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTD-QKGLHHMIWEIIDNSVDEMMAGYGT 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + +TL  +    V D+GRGIP D+H++   S  E ++T LHAGGKF+  +Y +SGGLHG
Sbjct: 61  TVKLTLKDNYLVEVEDDGRGIPVDIHEKTNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALSS  K+ + R+  I+ + F + G+   PL + G+     GT + F+P   I
Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVPLKPLEIIGTDNKKQGTRIQFVPDFSI 180

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
               +++   +  R+ +L+FLN  ++    D+R+ +  +    Y+GGI+ +V  L+  K+
Sbjct: 181 MEQFEYDETIISDRIEQLAFLNKGIKFIFNDERTDKKTKQEWLYEGGIKQYVENLNASKE 240

Query: 242 PLMQSPIRIQGS----------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           P++   I  +               + +++A ++ +GY+ +   F NNI    GGTH  G
Sbjct: 241 PIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQGGTHEEG 300

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++AL + I  Y  +    K+    +  +D  EG T+++SIK  +P++  QTK++L ++E
Sbjct: 301 FKNALYKIINRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKDRLGNTE 360

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR    S V++ L  +  E+P EA  I  K + A   R  +  A   + RK   + ASLP
Sbjct: 361 VREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAA-LESARKSPFESASLP 419

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC+ +D + SEL++VEGDSAGGSAK GR R  QAILPLRGK+LNVE+A  +K+  +
Sbjct: 420 GKLADCTTKDMEISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHEKIFKN 479

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +EI TLITA+G G+    F ++K+RY+KIIIMTDADVDGAHIR LLLTFFFR M  LI  
Sbjct: 480 EEIRTLITAIGAGV-NPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFPLIEK 538

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           G +YI +PPLY ++  K  +Y+  +  LE++                 G +    L  
Sbjct: 539 GHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQNPNVRYELQRYKGLGEMDDVQLWE 596



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 5/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ--EQFVLE 678
           V N E      +    ++   +  I       +       + ++      V      +L 
Sbjct: 465 VLNVEKANHEKIFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILL 524

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738
            +  F             I +  L  +S         I     L +           +QR
Sbjct: 525 LTFFFRHMFPLIEKGHVYIAQPPLYRVSYNKQNKY--IYSDAQLEEWKNQNPNVRYELQR 582

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P+ R+LL+V I DA+ AD  FS LMGDEV PRR+FI++N+  
Sbjct: 583 YKGLGEMDDVQLWETTMDPEKRTLLKVSINDAANADKTFSLLMGDEVSPRRDFIEKNAKS 642

Query: 799 S-ALD 802
              +D
Sbjct: 643 VKNID 647


>gi|327334567|gb|EGE76278.1| DNA gyrase, B subunit [Propionibacterium acnes HL097PA1]
          Length = 685

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 270/583 (46%), Positives = 365/583 (62%), Gaps = 13/583 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              + SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D 
Sbjct: 32  TTVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDT 90

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L  D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGV
Sbjct: 91  IQVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGV 150

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181
           G SVVNAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +I
Sbjct: 151 GSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEI 210

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235
           F    F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +
Sbjct: 211 FDAIVFDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRF 270

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L   +  +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R
Sbjct: 271 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFR 330

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +
Sbjct: 331 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 390

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412
           S V+  +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPG
Sbjct: 391 SFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGSTSLPG 450

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DCS   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+
Sbjct: 451 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 510

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G
Sbjct: 511 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 569

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
            +Y+ +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 570 HVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 677 AKDVRFLDI 685


>gi|227510437|ref|ZP_03940486.1| DNA topoisomerase IV subunit B [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227513446|ref|ZP_03943495.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri ATCC 11577]
 gi|227524588|ref|ZP_03954637.1| DNA topoisomerase IV subunit B [Lactobacillus hilgardii ATCC 8290]
 gi|227083319|gb|EEI18631.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri ATCC 11577]
 gi|227088263|gb|EEI23575.1| DNA topoisomerase IV subunit B [Lactobacillus hilgardii ATCC 8290]
 gi|227190089|gb|EEI70156.1| DNA topoisomerase IV subunit B [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 682

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 271/601 (45%), Positives = 371/601 (61%), Gaps = 13/601 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            Q   YD  SIQIL+GL+AV+KRP MYIG TD   GLHH++YE++DN +DE L GY D+I
Sbjct: 34  KQKQKYDDSSIQILEGLEAVRKRPGMYIGSTDY-RGLHHLVYEIVDNGVDEVLAGYGDMI 92

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S TV D+GRG+P  +H   G    EVI+T+LHAGGKF Q  YK SGGLHGVG
Sbjct: 93  RVTIHKDNSITVVDHGRGMPVGMHAS-GKPTPEVILTQLHAGGKFGQGGYKTSGGLHGVG 151

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS+WLK+ I R+G  YE  F + G     L   G     TGT V+F P S IF+
Sbjct: 152 ASVVNALSTWLKVTIVRDGYKYEEDFKDGGHPVGTLRKLGKTKEHTGTTVSFKPDSSIFT 211

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +N+ TL  RLRE +FL    +I LID+R  + +E T  Y+ GI+ FV YL+   K  
Sbjct: 212 NTVYNFSTLSERLRESAFLLKGTKIILIDERPGQEQEETFHYEDGIKEFVQYLNED-KHT 270

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +   +   G++D + +++A ++NDGY E ++ F NN+  KDGGTH +GLR+A T+    Y
Sbjct: 271 LGDVMYFDGTKDGVEVEVAAQYNDGYSETMMSFVNNVRTKDGGTHEAGLRNAWTKAFNDY 330

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K   +++ G D REG + VLS+++P+   +F  QTKEKL + E RS+V++ V+
Sbjct: 331 ARKVGLLKDKDKNLEGSDVREGLSVVLSLRIPEEILQFEGQTKEKLGTPEARSIVDNVVS 390

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSE 419
           + L  +L E+   A+++V K L A   R AARRARD TR  ++       L GKL     
Sbjct: 391 EKLGYYLMENGEFAQMLVHKALRARQARQAARRARDETRNGKRHKKQERLLSGKLTPAQS 450

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  ++ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ERA+  +++ ++EI T+I 
Sbjct: 451 KDYSRNELFLVEGDSAGGSAKQGRDRRYQAILPLRGKVLNTERAKLPEIMKNEEINTMIY 510

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G D F+I    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G ++I  P
Sbjct: 511 TIGAGVGAD-FNIEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDKGRVFIALP 569

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PLY +     +   +QY    E L+           ++ F     + +       +D A 
Sbjct: 570 PLYKLQKGAGKKAKIQYAWTNEELDSVSKTFGKGYSLQRFKGLGEMNADQLWETTMDPAT 629

Query: 596 K 596
           +
Sbjct: 630 R 630



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 6/197 (3%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +        +   V N E  +   +    ++   +  I       ++    N D
Sbjct: 472 QGRDRRYQAIL---PLRGKVLNTERAKLPEIMKNEEINTMIYTIGAGVGADFNIEDANYD 528

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG-- 718
            ++           +      F +      I   R+      +  L    G K KI    
Sbjct: 529 KIIIMTDADDDGAHIQILLLTFFYKYMRPMIDKGRVFIALPPLYKLQKGAGKKAKIQYAW 588

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               LD++     KG S+QR+KGLGEMNA QLWETT++P TR+L++V+I DA+ A+   +
Sbjct: 589 TNEELDSVSKTFGKGYSLQRFKGLGEMNADQLWETTMDPATRTLIKVRIDDAALAERRVT 648

Query: 779 RLMGDEVEPRREFIQEN 795
            LMGD+VEPRR++I++N
Sbjct: 649 TLMGDKVEPRRKWIEQN 665


>gi|283470569|emb|CAQ49780.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 665

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 370/598 (61%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N DGS +  DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEIDVTINKDGSISTEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  
Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+
Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           S V D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++
Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NPDTR+L+RV++ D  ++    
Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPDTRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 618 TTLMGDKVQPRREWIEKH 635


>gi|168067741|ref|XP_001785766.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662596|gb|EDQ49430.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 642

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 269/589 (45%), Positives = 366/589 (62%), Gaps = 17/589 (2%)

Query: 16  QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCT 75
           Q+L+GL+AV+KRP MYIG T G  GLHH++YEVLDNAIDE+  G+A  + + ++ DGS +
Sbjct: 2   QVLEGLEAVRKRPGMYIGST-GAKGLHHLVYEVLDNAIDEAQAGFASTVDIVMHTDGSVS 60

Query: 76  VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGVGVSVVNALSS 133
           +SDNGRGIPTD+H   G SA E ++T LHAGGKF  +   Y VSGGLHGVG+SVVNALS 
Sbjct: 61  ISDNGRGIPTDVHPVTGKSALETVLTVLHAGGKFGGDNSGYSVSGGLHGVGISVVNALSE 120

Query: 134 WLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEVTFLPSSD------IFSV 184
            + + + R G+ Y+ SF  G   + L    +       TGT V FLP           S 
Sbjct: 121 RVDVTVWRNGHEYKQSFEFGKSVSHLSGSRLPRDQKGRTGTLVKFLPDKQGKSFLMFTST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGIEAFVSYLDRHKKP 242
            +F+Y T+  R REL+FLN  V I L        + R  T  + GG+  +V +L+  K+ 
Sbjct: 181 TEFDYSTISGRTRELAFLNPQVTIYLKQDHANPEKIRSNTYHFSGGLSEYVLWLNNDKER 240

Query: 243 LMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           L   PI I   ++ I ID++++W  D Y + ++ + N+I   DGGTHL G+++A+TR + 
Sbjct: 241 LH-EPISIHRKKEGIIIDVSLQWCADSYTDTIIGYANSIRTSDGGTHLDGIKAAVTRTLN 299

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +   K+   K+   ++ GD  REG T V+S+K+P+P F  QTK +L + EVR +V+  V 
Sbjct: 300 TLGRKAKILKEKDENLSGDHAREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRRLVDQAVQ 359

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + ++ +LE+HP   + I+ K L A     AA++AR+L RRK VL  + LPGKL+DCS  D
Sbjct: 360 ELVTEYLEQHPNTLEAILSKALQAFRAAMAAKKARELVRRKNVLKSSMLPGKLSDCSCTD 419

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PK SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     +  +QEI  LI AL
Sbjct: 420 PKNSEIFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNIERKDDAAIYKNQEIQNLILAL 479

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+  + F  + LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L  +G +Y+  PPL
Sbjct: 480 GLGVKGEEFSKDLLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFESGCIYVGVPPL 539

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y + RGK   Y  +E  L++ L     +           G +    L  
Sbjct: 540 YKVERGKQAHYCFNEADLKNLLKTFPSNASYNIQRFKGLGEMMPQQLWE 588



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 12/208 (5%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +     +      +  I  +   +            L   L    +  E S      +  
Sbjct: 439 QGRDRRYQAILPLRGKILNIERKDDAAIYKNQEIQNLILALGLGVKGEEFSKDLLRYHKI 498

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
           I++            L  +  F    +Y+R                     K        
Sbjct: 499 IILTDADVDGAHIRTLLLTFFF----RYQRALFESGCIYVGVPPLYKVERGKQAHYCFNE 554

Query: 722 L-LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             L  +          ++QR+KGLGEM   QLWETTL+P  R L  + + DA++A  +FS
Sbjct: 555 ADLKNLLKTFPSNASYNIQRFKGLGEMMPQQLWETTLDPTQRMLKLLTLEDAAEASMMFS 614

Query: 779 RLMGDEVEPRREFIQENS----LPSALD 802
            LMGD+VEPR+E IQ N+    L   LD
Sbjct: 615 TLMGDKVEPRKELIQNNASRMKLE-NLD 641


>gi|116491056|ref|YP_810600.1| DNA topoisomerase IV subunit B [Oenococcus oeni PSU-1]
 gi|116091781|gb|ABJ56935.1| DNA topoisomerase IV subunit B [Oenococcus oeni PSU-1]
          Length = 674

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 256/653 (39%), Positives = 364/653 (55%), Gaps = 20/653 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +  SY+   I+IL+GL+AV+ RP MYIG TD   GLHH+++E++DNA+DE L GY
Sbjct: 8   MTKK-KEISYNESDIKILEGLEAVRVRPGMYIGSTD-TRGLHHLVWEIVDNAVDEILAGY 65

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S TV D+GRG+P  +H   G    EVI+T LHAGGKF Q  YK +GGL
Sbjct: 66  GDSIKVIIHQDNSITVVDHGRGMPVGMHAS-GKPTPEVILTVLHAGGKFGQGGYKTAGGL 124

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS  L + I R+G  Y  +F N G     L   G   + TGT +TF P  
Sbjct: 125 HGVGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDP 184

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + + T+  RLRE +FL   ++I+LID+R          YK GI+ FV YL+  
Sbjct: 185 TIFSTTVYKFQTIADRLRESAFLLKGIKITLIDERPDPQIIEEYQYKDGIKEFVDYLNEG 244

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K ++   I   G +  I +++A ++NDGY E +L F NN+   DGGTH +G++ A T+ 
Sbjct: 245 -KAVIGKVIYFDGEQQGIEVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGMKVAWTKA 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K+   K+   +  G D REG + V+++++P+   +F  QTKEKL + E RS V 
Sbjct: 304 FNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTIEARSAVG 363

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLA 415
           S + + L  +L E+   A+ +V+K L A   R AAR+ARD +R             GKL 
Sbjct: 364 SVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKRKEFLLSGKLT 423

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +D  K ELFLVEGDSAGGSAKQGRSR+ QA+LPLRGK+LN E+A  +++L ++EI 
Sbjct: 424 PAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEELLKNEEIS 483

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F+I    Y+K+IIMTDAD DGAHI+TLLLTFF++ M  L+  G +Y
Sbjct: 484 TMIYTIGAGVG-TDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLVEAGRVY 542

Query: 536 IIKPPLYGI----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY +     + K  ++    E L +     +    I  +           +   +
Sbjct: 543 IALPPLYKVTSGAKKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGE------MDANL 596

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                +D   +       +          +   +        +   +A  L+ 
Sbjct: 597 LWETTMDPDQRTLIRVKIEDAALAEKRVTILMGDQVAPRRKWIEDNVAFSLDE 649



 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 57/87 (65%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               K +       L  +     +G ++ RYKGLGEM+A+ LWETT++PD R+L+RVKI 
Sbjct: 556 KKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGEMDANLLWETTMDPDQRTLIRVKIE 615

Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN 795
           DA+ A+   + LMGD+V PRR++I++N
Sbjct: 616 DAALAEKRVTILMGDQVAPRRKWIEDN 642


>gi|148544013|ref|YP_001271383.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri DSM 20016]
 gi|227364928|ref|ZP_03848972.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri MM2-3]
 gi|325682449|ref|ZP_08161966.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri
           MM4-1A]
 gi|148531047|gb|ABQ83046.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri DSM 20016]
 gi|227070032|gb|EEI08411.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri MM2-3]
 gi|324978288|gb|EGC15238.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri
           MM4-1A]
          Length = 674

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 258/595 (43%), Positives = 368/595 (61%), Gaps = 15/595 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            +   YDA SIQ+LKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY D I
Sbjct: 8   KEEVKYDASSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGDEI 66

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGGLHGV 123
            + +  D + TV D+GRG+P  +H   G    EVIMT LHAGGKF Q   YK SGGLHGV
Sbjct: 67  NIIIEADNAITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGV 125

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALSS L L I R+   Y+  F + G     L   G    + GT V+F P   IF
Sbjct: 126 GASVVNALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIF 185

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   ++Y+TL +RLRE +FL   ++I+L DKR+ + ++    +  GI+ FVSYL+   K 
Sbjct: 186 STTVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFADGIQEFVSYLNEG-KD 244

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++   +   G +D + +++A ++NDGY E++L F NN+   DGGTH +G RSA T+    
Sbjct: 245 VLGKTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTKTFNE 304

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y +K    K + +++ G D REG T+V+S+++P+   +F  QTK+KL + E R +V++ V
Sbjct: 305 YAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTLEARKIVDAIV 364

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
           ++ L+  L E+   A+++++K L A   R+AAR+AR+  R  ++      +L GKL    
Sbjct: 365 SEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQ 424

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ T+I
Sbjct: 425 SKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTII 484

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G G + F++    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +YI  
Sbjct: 485 YTVGAGAGSE-FNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIAL 543

Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY + R      ++ Y    E L                    G ++ + L  
Sbjct: 544 PPLYRLQRGRGAKTNITYAWTNEELTKLTKKMG-KGAQLQRFKGLGEMNADQLWE 597



 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++              +  +    S  +          ++   ++     
Sbjct: 383 IRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQSKNAKKNELFLVEGDSAG 442

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  +V    +L   +  +   +   ++   +N 
Sbjct: 443 GSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFNVEDSNY 502

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      I + +I      +  L    G K  IT  
Sbjct: 503 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQRGRGAKTNITYA 562

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QR+KGLGEMNA QLWETT+NPDTR+L++V+I DA  A+   
Sbjct: 563 WTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPDTRTLIQVRIEDAELAERRV 622

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMG++VEPRRE+I+EN
Sbjct: 623 TTLMGNKVEPRREWIEEN 640


>gi|59798271|sp|Q6G9K5|PARE_STAAS RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
          Length = 663

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 263/594 (44%), Positives = 368/594 (61%), Gaps = 14/594 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY + I
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
            SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  K+ L
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    Y
Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+S V 
Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL     
Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I 
Sbjct: 419 KNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+    ++I  P
Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQADRVFIALP 537

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + ++R+      +  L        +++  
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQADRVFIALPPLYKLEKGKGKTKRVEYA 555

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 616 TTLMGDKVQPRREWIEKH 633


>gi|83319520|ref|YP_424038.1| DNA gyrase, B subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283406|gb|ABC01338.1| DNA gyrase, B subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 634

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 245/565 (43%), Positives = 363/565 (64%), Gaps = 7/565 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A+SI++LKGL+AV+ RP MYIG T   +GLHH+++E+LDN+IDE++ GYAD+I V
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  +    + DNGRGIP  ++ +   SA  ++ T+LHAGGKF+ ++YK+SGGLHGVG S
Sbjct: 61  TITKENEVIIQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS ++++ + R    Y   F  G    + L   G   +  GT+V F P  +IF   
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHT-DLRGTKVKFKPDPEIFKET 179

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y+ +++++++L+FLN  ++I+L D+R  +  E       GI  ++   +  K  + 
Sbjct: 180 VVFDYEVIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +   +    ++I +++A+++N  Y EN++ F NNI   +GGTH  GL+ AL R I  Y 
Sbjct: 238 PNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINRYA 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +    + K       DD +EG   +LS++  DP++  QTK KL + + +  V   + +  
Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L + P +AK I+ K ++A   R AA+RAR+ TRRK  LD  SLPGKLADC  +D   
Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQRAREETRRKSALDSFSLPGKLADCETKDSNI 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER    +  S+ EI +++TA+GTG
Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIVTAVGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I ++  D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M  L+ NG +YI +PPLY I
Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569
             GK + Y   +  L++   N+  +
Sbjct: 537 EAGKKIAYAYTDNQLDELKNNEFNN 561



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 4/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E      +++ + +  +    ++    S      +V      V    +    
Sbjct: 450 VLNVERVTEARAFSNNEIKSIVTAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738
             F +      + +  I       L  I  G KI      + LD + +     +  ++QR
Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDNQLDELKNNEFNNLKYTIQR 568

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P  R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+  
Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628

Query: 799 S-ALD 802
              +D
Sbjct: 629 VENID 633


>gi|154496136|ref|ZP_02034832.1| hypothetical protein BACCAP_00420 [Bacteroides capillosus ATCC
           29799]
 gi|150274691|gb|EDN01755.1| hypothetical protein BACCAP_00420 [Bacteroides capillosus ATCC
           29799]
          Length = 649

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 275/652 (42%), Positives = 401/652 (61%), Gaps = 13/652 (1%)

Query: 1   MSDNIQ--------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           MSD ++        +  Y    IQ+L+GL+AV+KRP MYIG T   SGLHH++YE++DN+
Sbjct: 1   MSDELELEQSATQVDHEYGGSEIQVLEGLEAVRKRPGMYIGSTSS-SGLHHLVYEIVDNS 59

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L GY D I V +      +V+DNGRGIP D+  + G+ A EV+ T LHAGGKF   
Sbjct: 60  IDEALAGYCDRIDVAILEGDIISVTDNGRGIPVDIQPQTGLPALEVVFTILHAGGKFGGG 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            YKVSGGLHGVG SVVNALS WL++R+ ++G I+EM F  G +   + + G   +  GTE
Sbjct: 120 GYKVSGGLHGVGASVVNALSEWLEVRVYKDGKIHEMKFSRGKVTQSMTIVGET-DRHGTE 178

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F P  ++F    ++Y+ L  R+RE +FLN+ ++I + D+R    +E TM+Y+GGI  F
Sbjct: 179 VVFKPDPEMFEDTVYDYEILHTRMREEAFLNAGLKIVIQDRRPGMEQEDTMYYEGGIREF 238

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           VS+++++K P+    I + G +D+   ++AM++ D Y+E ++ F NN+   +GG H +G 
Sbjct: 239 VSFINKNKTPIHDGVIYMSGMKDDSIAEIAMQYTDTYNEILVSFANNVHTPEGGMHETGF 298

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           + ALT  + +Y +K    K ++  V G+DCREG T+V+S+K+ + +F  QTK KL ++ +
Sbjct: 299 KQALTNVLNAYGKKMKILKDEE-KVSGEDCREGLTAVISVKLTEAQFEGQTKAKLGNAHI 357

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R++V + V++ L  +LEE+P   K I+ K L AS  R+AAR+AR+  RRK  L  A++P 
Sbjct: 358 RTLVSTLVSEKLEEFLEENPAVGKAILDKALTASRAREAARKARESVRRKTALGGAAMPD 417

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DC+E +P+ +EL++VEGDSAGGSA QGR    QAILPL GK+LNVE+AR DK+  + 
Sbjct: 418 KLRDCNEVNPELTELYIVEGDSAGGSATQGRDSRFQAILPLWGKMLNVEKARADKVYGND 477

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           ++  +ITALG GIG D FD++KLRYHK+IIM DADVDGAHIRTLLLTFFFR M  LI NG
Sbjct: 478 KLQPVITALGAGIG-DEFDVSKLRYHKVIIMADADVDGAHIRTLLLTFFFRFMRPLIENG 536

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           ++Y   PPLY +TRGK+ +    +E  +                 S+         + + 
Sbjct: 537 YVYSAVPPLYKLTRGKTTRVAFSDEERDQVSAELRGDNPNAKVDISRFKGLGEMNPHEL- 595

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
               +D   +          +       +   E  +     +       +N 
Sbjct: 596 WETTMDPEKRTLRRIELDDAVAADATFTILMGEKVEPRKEFIEKNAKYAVNL 647



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 52/68 (76%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           + R+KGLGEMN  +LWETT++P+ R+L R+++ DA  AD  F+ LMG++VEPR+EFI++N
Sbjct: 581 ISRFKGLGEMNPHELWETTMDPEKRTLRRIELDDAVAADATFTILMGEKVEPRKEFIEKN 640

Query: 796 SLP-SALD 802
           +     LD
Sbjct: 641 AKYAVNLD 648


>gi|290890537|ref|ZP_06553612.1| hypothetical protein AWRIB429_1002 [Oenococcus oeni AWRIB429]
 gi|290479933|gb|EFD88582.1| hypothetical protein AWRIB429_1002 [Oenococcus oeni AWRIB429]
          Length = 674

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 255/653 (39%), Positives = 364/653 (55%), Gaps = 20/653 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +  SY+   I+IL+GL+AV+ RP MYIG TD   GLHH+++E++DNA+DE L GY
Sbjct: 8   MTKK-KEISYNESDIKILEGLEAVRVRPGMYIGSTD-TRGLHHLVWEIVDNAVDEILAGY 65

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V ++ D S TV D+GRG+P  +H   G    EVI+T LHAGGKF Q  YK +GGL
Sbjct: 66  GDSIKVIIHQDNSITVVDHGRGMPVGMHAS-GKPTPEVILTVLHAGGKFGQGGYKTAGGL 124

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS  L + I R+G  Y  +F N G     L   G   + TGT +TF P  
Sbjct: 125 HGVGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDP 184

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + + T+  RLRE +FL   ++I+LID+R          YK GI+ FV YL+  
Sbjct: 185 TIFSTTVYKFQTIADRLRESAFLLKGIKITLIDERPDPQIIEEYQYKDGIKKFVDYLNEG 244

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K ++   +   G +  I +++A ++NDGY E +L F NN+   DGGTH +G++ A T+ 
Sbjct: 245 -KAVIGKVMYFDGEQQGIEVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGMKVAWTKA 303

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K+   K+   +  G D REG + V+++++P+   +F  QTKEKL + E RS V 
Sbjct: 304 FNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTIEARSAVG 363

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLA 415
           S + + L  +L E+   A+ +V+K L A   R AAR+ARD +R             GKL 
Sbjct: 364 SVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKGKEFLLSGKLT 423

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +D  K ELFLVEGDSAGGSAKQGRSR+ QA+LPLRGK+LN E+A  +++L ++EI 
Sbjct: 424 PAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEELLKNEEIS 483

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G   F+I    Y+K+IIMTDAD DGAHI+TLLLTFF++ M  L+  G +Y
Sbjct: 484 TMIYTIGAGVG-TDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLVEAGRVY 542

Query: 536 IIKPPLYGI----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY +     + K  ++    E L +     +    I  +           +   +
Sbjct: 543 IALPPLYKVTSGAKKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGE------MDANL 596

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                +D   +       +          +   +        +   +A  L+ 
Sbjct: 597 LWETTMDPDQRTLIRVKIEDAALAEKRVTILMGDQVAPRRKWIEDNVAFSLDE 649



 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 57/87 (65%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               K +       L  +     +G ++ RYKGLGEM+A+ LWETT++PD R+L+RVKI 
Sbjct: 556 KKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGEMDANLLWETTMDPDQRTLIRVKIE 615

Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN 795
           DA+ A+   + LMGD+V PRR++I++N
Sbjct: 616 DAALAEKRVTILMGDQVAPRRKWIEDN 642


>gi|319401357|gb|EFV89568.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis FRI909]
          Length = 666

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 278/672 (41%), Positives = 396/672 (58%), Gaps = 20/672 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT+N DGS ++ DNGRG+PT +H   G   AEVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GDAITVTINQDGSISIEDNGRGMPTGIHAS-GKPTAEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+GNIY  +F N GI    LV TG       T+VTF P S
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDS 176

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     FN+D L  RL+E +FL   ++I+L D RS + RE    Y+ GI+ FVSY++ 
Sbjct: 177 EIFKSTTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 GKEVLH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL +SE RS V
Sbjct: 296 VFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S V++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL
Sbjct: 356 DSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI
Sbjct: 416 TPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G   F I    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G +
Sbjct: 476 NTIIHTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           +I  PPLY +     + K ++Y   +E LE+          ++ +     +  +      
Sbjct: 535 FIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFTLQRYKGLGEMNPEQLWETT 594

Query: 591 ID----DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
           ++      +++    +        T +   V       E   E  +     + +      
Sbjct: 595 MNPETRTLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKHVEFGMQEDQSILDNKEVQI 654

Query: 647 EKSEKSWHGSIN 658
            ++EK      N
Sbjct: 655 LENEKYIEEETN 666



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     +S  ++  L        SKN 
Sbjct: 364 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLSGKLTPAQSKN- 422

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                ++   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 423 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 480

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 481 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 540

Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L        K++       L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 541 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETR 600

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV++ D  ++    + LMGD+V PRRE+I+++
Sbjct: 601 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 635


>gi|220910789|ref|YP_002486098.1| DNA gyrase subunit B [Arthrobacter chlorophenolicus A6]
 gi|219857667|gb|ACL38009.1| DNA gyrase, B subunit [Arthrobacter chlorophenolicus A6]
          Length = 695

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 266/605 (43%), Positives = 375/605 (61%), Gaps = 30/605 (4%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++      Y A  I +L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY 
Sbjct: 25  AEAATPREYGASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYC 83

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I + L  DG   V D+GRGIP D+H  E     EV+MT LHAGGKF    Y VSGGLH
Sbjct: 84  SHIEIVLQADGGVKVVDDGRGIPVDMHPTEHKPTVEVVMTILHAGGKFGGGGYAVSGGLH 143

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           GVG+SVVNALSS +   ++R+G+++ MSF N G     L V G     TGT  TF P ++
Sbjct: 144 GVGISVVNALSSRVDTEVRRQGHVWRMSFANGGKPQGSL-VQGEETERTGTTQTFYPDAE 202

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------------SPEP 218
           IF   +F+++TL+ R ++++FLN  ++I+L D+R                      + E 
Sbjct: 203 IFETTEFDFETLRARFQQMAFLNKGLRITLTDERAATEEEADADPDLDGMVTEGEINAEH 262

Query: 219 REITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVL 274
           R +   Y  G+  +V +L+  KK     +  I  +       I++++AM+W + Y E+V 
Sbjct: 263 RTVVYQYDEGLLDYVKHLNSGKKVDVVHEDVIAFETEDKDRKIALEMAMQWTNAYSESVH 322

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + N I   +GGTH  G R+A+T  +  Y  +    K+   ++ GDD REG T+V+S+K+
Sbjct: 323 TYANTINTHEGGTHEEGFRAAMTSLVNRYAREKGIIKEKDDNLTGDDIREGLTAVISVKL 382

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV+  V+  V DGL  WLE +P  A+ +++K + A+  R AAR+
Sbjct: 383 SEPQFEGQTKTKLGNSEVKGFVQRVVTDGLGDWLERNPGPARDVIRKAISAAQARMAARK 442

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD  RRK  L+   +PGKL+DCS +DP+K E+++VEGDSAGGSAK+GR+ E QAILPLR
Sbjct: 443 ARDNARRKSPLESFGMPGKLSDCSSKDPEKCEVYIVEGDSAGGSAKRGRNPETQAILPLR 502

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVERAR DK L + E+ ++ITA GTGIG+D FD+ KLRYHKI++M DADVDG HI 
Sbjct: 503 GKILNVERARLDKALGNAEVQSMITAFGTGIGED-FDLAKLRYHKIVLMADADVDGQHIT 561

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           TLL+T  FR M  LI NG++Y+ +PPLY I    +       +   D  +    +    +
Sbjct: 562 TLLMTLLFRYMRPLIENGYVYLAQPPLYRIKWSNAPHDYVYSDRERDAKLVSGQAAGRRI 621

Query: 575 FCDSK 579
             D+ 
Sbjct: 622 PKDNG 626



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LW+TT++PD R+LL+V + DA  AD +FS LMG++VE RR FIQ+N
Sbjct: 627 IQRYKGLGEMDYTELWDTTMDPDNRTLLQVTMDDALAADQIFSVLMGEDVESRRNFIQQN 686

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 687 AKDVRFLDI 695


>gi|282876210|ref|ZP_06285077.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis SK135]
 gi|281295235|gb|EFA87762.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis SK135]
 gi|329735876|gb|EGG72155.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU028]
          Length = 666

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/599 (45%), Positives = 377/599 (62%), Gaps = 17/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT+N DGS ++ DNGRG+PT +H   G   AEVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GDAITVTINQDGSISIEDNGRGMPTGIH-VSGKPTAEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+GNIY  +F N GI    LV TG       T+VTF P S
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDS 176

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     FN+D L  RL+E +FL   ++I+L D RS + RE    Y+ GI+ FVSY++ 
Sbjct: 177 EIFKSTTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 GKEVLH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL +SE RS V
Sbjct: 296 VFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S V++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL
Sbjct: 356 DSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI
Sbjct: 416 TPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G   F I    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G +
Sbjct: 476 NTIIHTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +I  PPLY +     + K ++Y   +E LE+          I       G ++   L  
Sbjct: 535 FIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGF-ILQRYKGLGEMNPEQLWE 592



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     ++  ++  L        SKN 
Sbjct: 364 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 422

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                ++   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 423 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 480

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 481 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 540

Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L        K++       L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 541 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 600

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV++ D  ++    + LMGD+V PRRE+I+++
Sbjct: 601 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 635


>gi|290894160|ref|ZP_06557131.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-071]
 gi|290556290|gb|EFD89833.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-071]
          Length = 655

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 261/658 (39%), Positives = 386/658 (58%), Gaps = 18/658 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL++DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHVDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNY+TL  RLRE +FL   + I LID+R          ++ G++ FV Y++  K  
Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLVKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  
Sbjct: 475 HTVGAGVG-TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593
           PPLY ++    + + ++Y   +E L+  +        I+ +     + +       ++ D
Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              + ++  D     ++              +  ++          N L       E+
Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDSQNILENENMMVEE 651



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  ++              ++      S  +          ++   +
Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
               N D +V           +      F +      + + ++      +  +     K 
Sbjct: 487 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+
Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 606 ARAERRVATLMGDKVEPRRQWIEKH 630


>gi|314965771|gb|EFT09870.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA2]
 gi|315094452|gb|EFT66428.1| DNA gyrase, B subunit [Propionibacterium acnes HL060PA1]
 gi|327328947|gb|EGE70707.1| DNA gyrase, B subunit [Propionibacterium acnes HL103PA1]
          Length = 685

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 266/561 (47%), Positives = 358/561 (63%), Gaps = 13/561 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              + SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D 
Sbjct: 32  TTVDDSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDT 90

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L  D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGV
Sbjct: 91  IQVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGV 150

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181
           G SVVNAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +I
Sbjct: 151 GSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEI 210

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235
           F    F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +
Sbjct: 211 FDAIVFDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRF 270

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L   +  +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R
Sbjct: 271 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFR 330

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +
Sbjct: 331 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 390

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412
           S V+  +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPG
Sbjct: 391 SFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGSTSLPG 450

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DCS   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+
Sbjct: 451 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 510

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G
Sbjct: 511 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 569

Query: 533 FLYIIKPPLYGITRGKSLQYV 553
            +Y+ +PPL+ +    S   +
Sbjct: 570 HVYLAQPPLFRLRWTNSPHEL 590



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 677 AKDVRFLDI 685


>gi|27467954|ref|NP_764591.1| DNA topoisomerase IV subunit B [Staphylococcus epidermidis ATCC
           12228]
 gi|57866861|ref|YP_188504.1| DNA topoisomerase IV subunit B [Staphylococcus epidermidis RP62A]
 gi|27315499|gb|AAO04633.1|AE016747_130 topoisomerase IV subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|57637519|gb|AAW54307.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis RP62A]
 gi|329725092|gb|EGG61586.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU144]
 gi|329736686|gb|EGG72952.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU045]
          Length = 666

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/599 (45%), Positives = 377/599 (62%), Gaps = 17/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY
Sbjct: 1   MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT+N DGS ++ DNGRG+PT +H   G   AEVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GDAITVTINQDGSISIEDNGRGMPTGIHAS-GKPTAEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+GNIY  +F N GI    LV TG       T+VTF P S
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDS 176

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     FN+D L  RL+E +FL   ++I+L D RS + RE    Y+ GI+ FVSY++ 
Sbjct: 177 EIFKSTTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 GKEVLH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL +SE RS V
Sbjct: 296 VFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S V++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL
Sbjct: 356 DSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI
Sbjct: 416 TPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G   F I    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G +
Sbjct: 476 NTIIHTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +I  PPLY +     + K ++Y   +E LE+          I       G ++   L  
Sbjct: 535 FIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGF-ILQRYKGLGEMNPEQLWE 592



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     ++  ++  L        SKN 
Sbjct: 364 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 422

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                ++   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 423 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 480

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 481 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 540

Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L        K++       L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 541 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 600

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV++ D  ++    + LMGD+V PRRE+I+++
Sbjct: 601 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 635


>gi|314982912|gb|EFT27004.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA3]
 gi|315091218|gb|EFT63194.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA4]
 gi|315105172|gb|EFT77148.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA2]
          Length = 685

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/561 (47%), Positives = 358/561 (63%), Gaps = 13/561 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              + SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D 
Sbjct: 32  TTVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDT 90

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L  D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGV
Sbjct: 91  IQVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGV 150

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181
           G SVVNAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +I
Sbjct: 151 GSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEI 210

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235
           F    F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +
Sbjct: 211 FDAIVFDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRF 270

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L   +  +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R
Sbjct: 271 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFR 330

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +
Sbjct: 331 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 390

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412
           S V+  +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPG
Sbjct: 391 SFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGSTSLPG 450

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DCS   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+
Sbjct: 451 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 510

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G
Sbjct: 511 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 569

Query: 533 FLYIIKPPLYGITRGKSLQYV 553
            +Y+ +PPL+ +    S   +
Sbjct: 570 HVYLAQPPLFRLRWTNSPHEL 590



 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 677 AKDVRFLDI 685


>gi|282853046|ref|ZP_06262383.1| DNA gyrase, B subunit [Propionibacterium acnes J139]
 gi|282582499|gb|EFB87879.1| DNA gyrase, B subunit [Propionibacterium acnes J139]
          Length = 690

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/561 (47%), Positives = 358/561 (63%), Gaps = 13/561 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              + SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D 
Sbjct: 37  TTVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDT 95

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L  D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGV
Sbjct: 96  IQVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGV 155

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181
           G SVVNAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +I
Sbjct: 156 GSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEI 215

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235
           F    F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +
Sbjct: 216 FDAIVFDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRF 275

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L   +  +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R
Sbjct: 276 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFR 335

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +
Sbjct: 336 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 395

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412
           S V+  +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPG
Sbjct: 396 SFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGSTSLPG 455

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DCS   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+
Sbjct: 456 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 515

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G
Sbjct: 516 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 574

Query: 533 FLYIIKPPLYGITRGKSLQYV 553
            +Y+ +PPL+ +    S   +
Sbjct: 575 HVYLAQPPLFRLRWTNSPHEL 595



 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 622 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 681

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 682 AKDVRFLDI 690


>gi|322411915|gb|EFY02823.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 649

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 275/650 (42%), Positives = 398/650 (61%), Gaps = 19/650 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+      ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I V +N DGS +V+D+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDDIRVIINKDGSVSVADSGRGMPTGQH-VMGIPTVQVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WLK+ I R+G +Y   F N G     L   G+A    +GT VTF+P
Sbjct: 119 LHGVGSSVVNALSAWLKVEITRDGAVYRQCFENGGKPVTTLRKVGTAPKSKSGTVVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL  +V++SL D R  EP      Y+ G++ FV YL+
Sbjct: 179 DDTIFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T
Sbjct: 239 EDKETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+S V++ L+ +L E+   A  +V+K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 358 VDSIVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 ISTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LED          I       G ++ N L  
Sbjct: 537 VYIALPPLYKMSKGKGKTEKISYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWE 595

Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                +    I   I D      +  +     +       +  +  +L  
Sbjct: 596 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               + +    S  +          ++   ++     
Sbjct: 381 VRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    +++  +  I       ++    N 
Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEISTMVYTIGAGVGADFNLEDINY 500

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G   KI+  
Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKISYA 560

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+   
Sbjct: 561 WTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRV 620

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+  PRR++I++N
Sbjct: 621 SVLMGDKAAPRRQWIEDN 638


>gi|7437456|pir||T10005 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - Mycobacterium
           leprae
 gi|1262356|emb|CAA94712.1| DNA gyrase B [Mycobacterium leprae]
          Length = 697

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/655 (41%), Positives = 383/655 (58%), Gaps = 41/655 (6%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y A SI IL+GL+AV+KRP MY+G T GE GLHH+I+EV+DN++DE++ GYA
Sbjct: 22  AQRKAQDEYGAASITILEGLEAVRKRPGMYVGST-GERGLHHLIWEVVDNSVDEAMAGYA 80

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119
             + V L  DGS  V+DNGRGIP  +H   G+   +V+MT+LHAGGKF      Y VSGG
Sbjct: 81  TQVDVRLFDDGSVEVADNGRGIPVAVHA-TGVPTVDVVMTQLHAGGKFGGKDSGYNVSGG 139

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS+ +++ IKR+G  +   +   +    ++  G A   TGT + F    
Sbjct: 140 LHGVGVSVVNALSTRVEVDIKRDGYEWSQFYDKAVP--GILKQGEATEATGTTIRFWADP 197

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------- 214
           DIF    +++ T+  R++E++FLN  + I+L+D+R                         
Sbjct: 198 DIFETTKYDFGTVARRIQEVAFLNKGLTINLVDERVKQDEVVDDVVSDTAEAPVAMTVEE 257

Query: 215 -------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
                    + R  T  Y GG+  FV +++R K P+ QS I   G      +++AM+WN 
Sbjct: 258 KSTESSAPHKVRHRTFHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGAGHEVEVAMQWNG 317

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  
Sbjct: 318 GYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLA 377

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P++AK +V K + ++ 
Sbjct: 378 AVISVKVSEPQFEGQTKTKLGNTEVKSFVQRVCNEQLIHWFEANPVDAKAVVNKAISSAQ 437

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AAR+AR+L RRK   D+  LPGKLADC   DP+ SEL++VEGDSAGGSAK GR    
Sbjct: 438 ARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRSSELYVVEGDSAGGSAKSGRDSMF 497

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI++LRYHKI++M DAD
Sbjct: 498 QAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISRLRYHKIVLMADAD 556

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDG HI TLLLT  FR M  LI +G++++ +PPLY +   +        +S  D L+   
Sbjct: 557 VDGQHISTLLLTLLFRFMRPLIEHGYVFLAQPPLYKLKWQRMDPEFAYSDSERDGLLETG 616

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           L    ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 617 LKLGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 669



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 61/87 (70%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+T   +G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 612 LLETGLKLGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 670

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 671 SILMGEDVDARRSFITRNAKDVRFLDV 697


>gi|50841503|ref|YP_054730.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202]
 gi|50839105|gb|AAT81772.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202]
          Length = 690

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 270/578 (46%), Positives = 364/578 (62%), Gaps = 13/578 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L
Sbjct: 42  SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 100

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGVG SVV
Sbjct: 101 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 160

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186
           NAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +IF    
Sbjct: 161 NALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDYEGTTVRFQPSDEIFDAIV 220

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240
           F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +L   +
Sbjct: 221 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 280

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R+ALT 
Sbjct: 281 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 340

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +S V+ 
Sbjct: 341 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 400

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417
            +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPGKL DC
Sbjct: 401 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 460

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+ I ++
Sbjct: 461 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 520

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G +Y+ 
Sbjct: 521 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 579

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 580 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 617



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 622 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 681

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 682 AKDVRFLDI 690


>gi|289427505|ref|ZP_06429218.1| DNA gyrase, B subunit [Propionibacterium acnes J165]
 gi|289159435|gb|EFD07626.1| DNA gyrase, B subunit [Propionibacterium acnes J165]
 gi|332674408|gb|AEE71224.1| DNA gyrase subunit B [Propionibacterium acnes 266]
          Length = 690

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 270/578 (46%), Positives = 363/578 (62%), Gaps = 13/578 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L
Sbjct: 42  SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 100

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGVG SVV
Sbjct: 101 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 160

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186
           NAL+    + ++R+G  +  SF  G  D PL    +    +  GT V F PS +IF    
Sbjct: 161 NALAVHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEIFDAIV 220

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240
           F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +L   +
Sbjct: 221 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 280

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R+ALT 
Sbjct: 281 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 340

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +S V+ 
Sbjct: 341 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 400

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417
            +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPGKL DC
Sbjct: 401 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 460

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+ I ++
Sbjct: 461 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 520

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G +Y+ 
Sbjct: 521 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 579

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 580 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 617



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 622 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 681

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 682 AKDVRFLDI 690


>gi|289424273|ref|ZP_06426056.1| DNA gyrase, B subunit [Propionibacterium acnes SK187]
 gi|295129538|ref|YP_003580201.1| DNA gyrase, B subunit [Propionibacterium acnes SK137]
 gi|289154970|gb|EFD03652.1| DNA gyrase, B subunit [Propionibacterium acnes SK187]
 gi|291375904|gb|ADD99758.1| DNA gyrase, B subunit [Propionibacterium acnes SK137]
          Length = 690

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 270/578 (46%), Positives = 364/578 (62%), Gaps = 13/578 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L
Sbjct: 42  SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 100

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGVG SVV
Sbjct: 101 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 160

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186
           NAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +IF    
Sbjct: 161 NALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEIFDAIV 220

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240
           F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +L   +
Sbjct: 221 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 280

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R+ALT 
Sbjct: 281 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 340

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +S V+ 
Sbjct: 341 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 400

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417
            +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPGKL DC
Sbjct: 401 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 460

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+ I ++
Sbjct: 461 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 520

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G +Y+ 
Sbjct: 521 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 579

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 580 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 617



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 622 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 681

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 682 AKDVRFLDI 690


>gi|313806865|gb|EFS45363.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA2]
 gi|313817652|gb|EFS55366.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA2]
 gi|313821523|gb|EFS59237.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA1]
 gi|313824533|gb|EFS62247.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA2]
 gi|313826201|gb|EFS63915.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA1]
 gi|314926324|gb|EFS90155.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA3]
 gi|314961671|gb|EFT05772.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA2]
 gi|314980248|gb|EFT24342.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA2]
 gi|314987104|gb|EFT31196.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA2]
 gi|314990695|gb|EFT34786.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA3]
 gi|315083089|gb|EFT55065.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA2]
 gi|315086622|gb|EFT58598.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA3]
 gi|315088023|gb|EFT59999.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA1]
 gi|327333681|gb|EGE75398.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA3]
 gi|327444460|gb|EGE91114.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA2]
 gi|328757967|gb|EGF71583.1| DNA gyrase, B subunit [Propionibacterium acnes HL020PA1]
          Length = 685

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 270/578 (46%), Positives = 363/578 (62%), Gaps = 13/578 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L
Sbjct: 37  SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 95

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGVG SVV
Sbjct: 96  LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 155

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186
           NAL+    + ++R+G  +  SF  G  D PL    +    +  GT V F PS +IF    
Sbjct: 156 NALAVHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEIFDAIV 215

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240
           F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +L   +
Sbjct: 216 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 275

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R+ALT 
Sbjct: 276 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 335

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +S V+ 
Sbjct: 336 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 395

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417
            +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPGKL DC
Sbjct: 396 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 455

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+ I ++
Sbjct: 456 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 515

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G +Y+ 
Sbjct: 516 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 574

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 575 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 677 AKDVRFLDI 685


>gi|313771057|gb|EFS37023.1| DNA gyrase, B subunit [Propionibacterium acnes HL074PA1]
 gi|313792559|gb|EFS40645.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA1]
 gi|313803561|gb|EFS44743.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA2]
 gi|313811778|gb|EFS49492.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA1]
 gi|313814213|gb|EFS51927.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA1]
 gi|313832312|gb|EFS70026.1| DNA gyrase, B subunit [Propionibacterium acnes HL007PA1]
 gi|313832772|gb|EFS70486.1| DNA gyrase, B subunit [Propionibacterium acnes HL056PA1]
 gi|313839631|gb|EFS77345.1| DNA gyrase, B subunit [Propionibacterium acnes HL086PA1]
 gi|314963864|gb|EFT07964.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA1]
 gi|314975206|gb|EFT19301.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA1]
 gi|314977620|gb|EFT21715.1| DNA gyrase, B subunit [Propionibacterium acnes HL045PA1]
 gi|314985195|gb|EFT29287.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA1]
 gi|315079002|gb|EFT51014.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA2]
 gi|315081489|gb|EFT53465.1| DNA gyrase, B subunit [Propionibacterium acnes HL078PA1]
 gi|315097154|gb|EFT69130.1| DNA gyrase, B subunit [Propionibacterium acnes HL038PA1]
 gi|327332508|gb|EGE74243.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA2]
 gi|327446714|gb|EGE93368.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA2]
 gi|327448844|gb|EGE95498.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA1]
 gi|327457406|gb|EGF04061.1| DNA gyrase, B subunit [Propionibacterium acnes HL092PA1]
 gi|328759820|gb|EGF73411.1| DNA gyrase, B subunit [Propionibacterium acnes HL099PA1]
          Length = 685

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 270/578 (46%), Positives = 364/578 (62%), Gaps = 13/578 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L
Sbjct: 37  SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 95

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGVG SVV
Sbjct: 96  LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 155

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186
           NAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +IF    
Sbjct: 156 NALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEIFDAIV 215

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240
           F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +L   +
Sbjct: 216 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 275

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R+ALT 
Sbjct: 276 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 335

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +S V+ 
Sbjct: 336 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 395

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417
            +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPGKL DC
Sbjct: 396 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 455

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+ I ++
Sbjct: 456 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 515

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G +Y+ 
Sbjct: 516 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 574

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 575 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 677 AKDVRFLDI 685


>gi|294630343|ref|ZP_06708903.1| DNA gyrase, B subunit [Streptomyces sp. e14]
 gi|292833676|gb|EFF92025.1| DNA gyrase, B subunit [Streptomyces sp. e14]
          Length = 685

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 285/645 (44%), Positives = 395/645 (61%), Gaps = 24/645 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V
Sbjct: 29  TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIDV 87

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 88  TILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 147

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSS + + ++ +G  +   +  G+   PL        +TGT VTF   +DIF   +
Sbjct: 148 VVNALSSKVSVEVRTDGYRWTQDYKMGVPTAPLARHEETA-ETGTSVTFWADADIFETTE 206

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR----------------SPEPREITMFYKGGIE 230
           ++++TL  R +E++FLN  + I L D+R                + E + +T  Y+GGI 
Sbjct: 207 YSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGADETDEVKSVTYHYEGGIV 266

Query: 231 AFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            FV Y   R    +  + I ++    +  +S+++AM+WN GY E V  F N I   +GGT
Sbjct: 267 DFVKYLNSRKGDVVHPTVIDLEAEDKDKSLSLEVAMQWNGGYSEGVYSFANIIHTHEGGT 326

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  I  Y       +    ++ GDD REG T+++S+K+ +P+F  QTK KL
Sbjct: 327 HEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTKL 386

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E ++ V+  V + L+ WL+ +P+EA  I++K + A+  R AAR+ARDLTRRKG+L+ 
Sbjct: 387 GNTEAKTFVQKAVYEHLNDWLDRNPVEAADIIRKGIQAATARVAARKARDLTRRKGLLES 446

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+AR DK
Sbjct: 447 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKARIDK 506

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L +QEI  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  
Sbjct: 507 ILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHISTLLLTFLFRFMRP 565

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+  G +Y+ +PPLY I  G+        +   D LI         +  DS        L
Sbjct: 566 LVEAGHVYLSRPPLYKIKWGRDDIEYAYSDRERDALIEMGRQRGKRIREDSIQRFKG--L 623

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                + L++  + ++       T  + A    +F+    +++  
Sbjct: 624 GEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEA 668



 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR-KGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR +G      S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 599 DALIEMGRQRGKRIREDSIQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLF 658

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR+FIQ N+     LDI
Sbjct: 659 SVLMGEDVEARRQFIQRNAKDVRFLDI 685


>gi|169825626|ref|YP_001695784.1| DNA gyrase subunit B [Lysinibacillus sphaericus C3-41]
 gi|168990114|gb|ACA37654.1| DNA gyrase subunit B [Lysinibacillus sphaericus C3-41]
          Length = 644

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 284/589 (48%), Positives = 396/589 (67%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + +QN +Y+AD IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L G+  
Sbjct: 9   EGLQNQAYEADQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGFCT 67

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  +    V DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 68  DIQVTIEKENWIRVEDNGRGIPVSIQEKMGKPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 127

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS    +++ REG+I+E+ F  G     L + G   +  GT   F    +IF
Sbjct: 128 VGASVVNALSVETIVQVHREGHIHEIKFQRGKTIQELKIIGDT-DRNGTTTRFKADPEIF 186

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + YD L HR+REL++LN  ++I++ D+R  E R  T  Y+GGI ++V +L++ K+
Sbjct: 187 KETTVYEYDILAHRIRELAYLNRGIKITIADEREGEERSTTYHYEGGIRSYVEHLNQSKE 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+      + G +D IS+++AM++N G+  N+  F NNI   +GGTH SG ++ALTR I 
Sbjct: 247 PIHDPID-VLGEKDGISVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTRVIN 305

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K    K+   ++ G+D REG T+++S+K PDP+F  QTK KL +SEV  +  S  +
Sbjct: 306 DYARKGGLLKEADANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNSLFS 365

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           DG   ++ E+P  A+ +V+K L A+  R AA++AR+ TRRK  L+++SLPGKLADCS  +
Sbjct: 366 DGFERFMLENPTVARKVVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCSSTN 425

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P   E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR DK+LS+ EI  +ITA 
Sbjct: 426 PADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMITAF 485

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ F++ K RYHKIIIMTDADVDGAHIRTLLLTFFFR +  LI  G++YI +PPL
Sbjct: 486 GTGIGEE-FNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQPPL 544

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y + +GK ++Y  D+E+L++ L       +         G ++   L +
Sbjct: 545 YQVKQGKHVEYCYDDETLKEILERLPKMPKPNVQRYKGLGEMNAEQLWD 593



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 66/87 (75%), Gaps = 2/87 (2%)

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                +L+ +  + +   ++QRYKGLGEMNA QLW+TT++P+ R+LL+V++ DA +A+  
Sbjct: 560 ETLKEILERLPKMPK--PNVQRYKGLGEMNAEQLWDTTMDPEHRTLLQVELDDAIKANQA 617

Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803
           F RLMGDEVEPRR+FI+EN++ + LDI
Sbjct: 618 FERLMGDEVEPRRQFIEENAVYANLDI 644


>gi|331701470|ref|YP_004398429.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128813|gb|AEB73366.1| DNA topoisomerase IV, B subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 651

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 261/597 (43%), Positives = 360/597 (60%), Gaps = 13/597 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            Q   YD  SIQIL+GLDAV+KRP MYIG TD   GLHH++YE++DNA+DE L GY D I
Sbjct: 3   KQKQKYDDSSIQILEGLDAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEVLAGYGDEI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V+++ D S TV D+GRG+PT +H   G    EVI+T LHAGGKF Q  YK SGGLHGVG
Sbjct: 62  DVSIHKDNSITVVDHGRGMPTGMHAS-GKPTPEVILTMLHAGGKFGQGGYKTSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS+WLK+ I R+G  YE  F N G     L   G     +GT VTF P   IF+
Sbjct: 121 ASVVNALSTWLKVVIVRDGYRYEEDFKNGGHPVGTLKKLGKTRAHSGTTVTFKPDPTIFT 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +N+  L  RLRE +FL    +I+L D+R+ + +E    Y+ GI+ FV YL+   K  
Sbjct: 181 STVYNFSVLSERLRESAFLLKGTKITLTDERTDQEQEDVFHYEEGIKEFVQYLNED-KHT 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +   +   G +D + +++A ++NDGY E +L F NN+  KDGGTH +GLR+A T+    Y
Sbjct: 240 LGDVMYFDGKKDGVEVEVAAQYNDGYSETMLSFVNNVRTKDGGTHEAGLRNAWTKAFNDY 299

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K+  +++ G D REG + VLS+++P+   +F  QTKEKL + E RS+V++ V+
Sbjct: 300 ARKVGMLKEKDKNLEGSDVREGLSVVLSLRIPEEILQFEGQTKEKLGTPEARSIVDNVVS 359

Query: 362 DGLSAWLEEHPLEAKIIVKK--VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + L  +L E+   A+ +V K      +       R    T ++       L GKL     
Sbjct: 360 EKLGYYLMENGEFAQTLVHKALRARQARQAARKARDETRTGKRHKKQERLLSGKLTPAQS 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  ++ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ERA+  +++ ++EI T+I 
Sbjct: 420 KDYSRNELFLVEGDSAGGSAKQGRDRRYQAILPLRGKVLNTERAKLPEIMKNEEINTMIY 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G D F+I+   Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I NG ++I  P
Sbjct: 480 TIGAGVGAD-FNIDDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDNGRVFIALP 538

Query: 540 PLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PLY + +G      +QY    E L     +      ++ F     + +       ++
Sbjct: 539 PLYKLQKGAGKKLKVQYAWTNEELNKVSKDFGKGYSLQRFKGLGEMNADQLWETTMN 595



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 3/262 (1%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +  ++   R +  +    +   E     +   +E  L        SK+  RN +     
Sbjct: 373 AQTLVHKALRARQARQAARKARDETRTGKRHKKQERLLSGKLTPAQSKDYSRNELFLVEG 432

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
                        +      +   V N E  +   +    ++   +  I       ++  
Sbjct: 433 DSAGGSAKQGRDRRYQAILPLRGKVLNTERAKLPEIMKNEEINTMIYTIGAGVGADFNID 492

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK 715
             N D ++           +      F +      I + R+      +  L    G K+K
Sbjct: 493 DANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDNGRVFIALPPLYKLQKGAGKKLK 552

Query: 716 ITG--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           +        L+ +     KG S+QR+KGLGEMNA QLWETT+NPDTR+L+RV+I DA+ A
Sbjct: 553 VQYAWTNEELNKVSKDFGKGYSLQRFKGLGEMNADQLWETTMNPDTRTLIRVRIDDAALA 612

Query: 774 DDLFSRLMGDEVEPRREFIQEN 795
           +   + LMGD+VEPRR++I+ N
Sbjct: 613 EKRVTTLMGDKVEPRRKWIEHN 634


>gi|325961456|ref|YP_004239362.1| DNA gyrase subunit B [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467543|gb|ADX71228.1| DNA gyrase subunit B [Arthrobacter phenanthrenivorans Sphe3]
          Length = 695

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/600 (44%), Positives = 373/600 (62%), Gaps = 30/600 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A  I +L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY   I V
Sbjct: 30  QREYGASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCTHIEV 88

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DG   V D+GRGIP D+H  E     EV+MT LHAGGKF    Y VSGGLHGVG+S
Sbjct: 89  VLQADGGVKVVDDGRGIPVDMHPTEHKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGIS 148

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS +   ++R+G+++ MSF + G     L V G   + TGT  TF P   IF   
Sbjct: 149 VVNALSSRVDTEVRRQGHVWRMSFADGGKPQGSL-VKGEETDLTGTTQTFYPDPAIFEST 207

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------------PEPREITM 223
           +F+++TL+ R ++++FLN  ++I+L D+R+                       E R +  
Sbjct: 208 EFDFETLRARFQQMAFLNKGLRITLTDERTSAEEEDDADLDLDGVVTEGEVKAEHRTVVY 267

Query: 224 FYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  G+  +V +L+  KK     +  I  +       I++++AM+W + Y E+V  + N 
Sbjct: 268 QYDEGLLDYVKHLNSGKKVDVVHEDVIAFETEDKDRKIALEMAMQWTNAYSESVHTYANT 327

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+A+T  I  Y  +    K+   ++ GDD REG T+V+S+K+ +P+F
Sbjct: 328 INTHEGGTHEEGFRAAMTSLINRYAREKGIIKEKDDNLTGDDIREGLTAVISVKLAEPQF 387

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SEV+  V+  V DGL  WLE +P  A+ +++K + A+  R AAR+ARD  
Sbjct: 388 EGQTKTKLGNSEVKGFVQRVVTDGLGDWLERNPGPARDVIRKAISAAQARMAARKARDNA 447

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  L+   +PGKL+DCS +DP++ E+++VEGDSAGGSAK+GR+ E QAILPLRGKILN
Sbjct: 448 RRKSPLESFGMPGKLSDCSSKDPERCEVYIVEGDSAGGSAKRGRNPETQAILPLRGKILN 507

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VERAR DK L + E+ ++ITA GTGIG+D FD++KLRYHKI++M DADVDG HI TLL+T
Sbjct: 508 VERARLDKALGNAEVQSMITAFGTGIGED-FDLSKLRYHKIVLMADADVDGQHITTLLMT 566

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             FR M  LI NG++Y+ +PPLY I    +       +   D  +    +    +  D+ 
Sbjct: 567 LLFRYMRPLIENGYVYLAQPPLYRIKWSNAAHDYVYSDRERDAKLVAGQAAGRRIPKDNG 626



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LW+TT++PD R+LL+V + DA  AD +FS LMG++VE RR FIQ+N
Sbjct: 627 IQRYKGLGEMDYTELWDTTMDPDNRTLLQVTMDDALAADQIFSVLMGEDVESRRNFIQQN 686

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 687 AKDVRFLDI 695


>gi|116668574|ref|YP_829507.1| DNA gyrase subunit B [Arthrobacter sp. FB24]
 gi|116608683|gb|ABK01407.1| DNA gyrase subunit B [Arthrobacter sp. FB24]
          Length = 696

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/606 (43%), Positives = 375/606 (61%), Gaps = 31/606 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++  +   Y A  I +L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY 
Sbjct: 25  AEAAERKGYGASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYC 83

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I + L  DG   V D+GRGIP D+H  E     EV+MT LHAGGKF    Y VSGGLH
Sbjct: 84  THIEIVLQADGGVKVVDDGRGIPVDMHPTEHKPTVEVVMTILHAGGKFGGGGYAVSGGLH 143

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           GVG+SVVNALSS +   ++R+G+++ MSF + G     L V G   + TGT  TF P + 
Sbjct: 144 GVGISVVNALSSRVDTEVRRQGHVWRMSFADGGKPQGSL-VKGEETDQTGTTQTFYPDAS 202

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------------E 217
           IF   +F+++TL+ R ++++FLN  ++I+L D+R                         E
Sbjct: 203 IFESTEFDFETLRARFQQMAFLNKGLRITLTDERREALESSEDGDLDLDNVPTEGEVAAE 262

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENV 273
            R +   Y  G+  +V +L+  KK     +  I  +       I++++AM+W + Y E+V
Sbjct: 263 YRTVVYQYDDGLLDYVKHLNSGKKVDVVHEDVIAFETEDKDRKIALEMAMQWTNAYSESV 322

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             + N I   +GGTH  G R+A+T  I  Y  +    K+   ++ GDD REG T+V+S+K
Sbjct: 323 HTYANTINTHEGGTHEEGFRAAMTSLINRYAREKNIIKEKDDNLTGDDIREGLTAVISVK 382

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL +SEV+  V+  V DGL  WLE +P  A+ +++K + A+  R AAR
Sbjct: 383 LAEPQFEGQTKTKLGNSEVKGFVQRVVTDGLGDWLERNPGPARDVIRKAISAAQARMAAR 442

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +ARD  RRK  L+   +PGKL+DCS +DP+K E+++VEGDSAGGSAK+GR+ E QAILPL
Sbjct: 443 KARDNARRKSPLESFGMPGKLSDCSSKDPEKCEVYIVEGDSAGGSAKRGRNPETQAILPL 502

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGKILNVERAR DK L + E+ ++ITA GTGIG+D FD+ KLRYHKI++M DADVDG HI
Sbjct: 503 RGKILNVERARLDKALGNNEVQSMITAFGTGIGED-FDLAKLRYHKIVLMADADVDGQHI 561

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
            TLL+T  FR M  LI NG++Y+ +PPLY I    +       +   D  +    +    
Sbjct: 562 TTLLMTLLFRYMRPLIENGYVYLAQPPLYRIKWSNAPHDYVYSDRERDARLLAGQAAGRR 621

Query: 574 LFCDSK 579
           +  D+ 
Sbjct: 622 IPKDNG 627



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LW+TT++PD R+LL+V + DA  AD +F+ LMG++VE RR FIQ+N
Sbjct: 628 IQRYKGLGEMDYTELWDTTMDPDHRTLLQVTMDDALAADQIFTVLMGEDVESRRNFIQQN 687

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 688 AKDVRFLDI 696


>gi|323444006|gb|EGB01617.1| DNA topoisomerase IV subunit B [Staphylococcus aureus O46]
          Length = 663

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 263/594 (44%), Positives = 367/594 (61%), Gaps = 14/594 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY + I
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+N DGS ++ DNGRG+PT +H + G    EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
            SVVNALS WL++ I R+GNIY  SF NG   +  +V       TGT+VTF P   IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDGTIFKA 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN+D L  RL+E +FL  +++I+L D RS + R+    Y+ GI+ FVSY++  K+ L
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    Y
Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS  +S V 
Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAADSVVA 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL     
Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I 
Sbjct: 419 KNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  P
Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PLY +     + K ++Y   +E L                    G ++   L  
Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717
           + ++           +      F F      + + R+      +  L        +++  
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V+PRRE+I+++
Sbjct: 616 TTLMGDKVQPRREWIEKH 633


>gi|242242634|ref|ZP_04797079.1| DNA topoisomerase [Staphylococcus epidermidis W23144]
 gi|242233770|gb|EES36082.1| DNA topoisomerase [Staphylococcus epidermidis W23144]
          Length = 664

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 276/668 (41%), Positives = 393/668 (58%), Gaps = 19/668 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY D I
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGDAI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVT+N DGS ++ DNGRG+PT +H   G   AEVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  TVTINQDGSISIEDNGRGMPTGIHAS-GKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS WL++ I R+GNIY  +F N GI    LV TG       T+VTF P S+IF 
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDSEIFK 178

Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FN+D L  RL+E +FL   ++I+L D RS + RE    Y+ GI+ FVSY++  K+ 
Sbjct: 179 STTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNEGKEV 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    
Sbjct: 239 LH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNE 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL +SE RS V+S V
Sbjct: 298 YARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVV 357

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL    
Sbjct: 358 SEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLSGKLTPAQ 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I
Sbjct: 418 SKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   F I    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  
Sbjct: 478 HTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIAL 536

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-- 592
           PPLY +     + K ++Y   +E LE+          ++ +     +  +      ++  
Sbjct: 537 PPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPE 596

Query: 593 --DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
               +++    +        T +   V       E   E  +     + +       ++E
Sbjct: 597 TRTLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKHVEFGMQEDQSILDNKEVQILENE 656

Query: 651 KSWHGSIN 658
           K      N
Sbjct: 657 KYIEEETN 664



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     +S  ++  L        SKN 
Sbjct: 362 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLSGKLTPAQSKN- 420

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                ++   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 421 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 479 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 538

Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L        K++       L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 539 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETR 598

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV++ D  ++    + LMGD+V PRRE+I+++
Sbjct: 599 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 633


>gi|126651999|ref|ZP_01724191.1| DNA gyrase subunit B [Bacillus sp. B14905]
 gi|126591268|gb|EAZ85377.1| DNA gyrase subunit B [Bacillus sp. B14905]
          Length = 644

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 283/589 (48%), Positives = 396/589 (67%), Gaps = 6/589 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + +QN +Y+AD IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L G+  
Sbjct: 9   EGLQNQAYEADQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGFCT 67

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  +    V DNGRGIP  + ++ G  A EVIMT LHAGGKF    YKVSGGLHG
Sbjct: 68  DIQVTIEKENWIRVEDNGRGIPVSIQEKMGKPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 127

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS    +++ REG+I+E+ F  G     L + G   +  GT   F    +IF
Sbjct: 128 VGASVVNALSVETIVQVHREGHIHEIKFQRGKTIQELKIIGDT-DRNGTTTRFKADPEIF 186

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                + YD L HR+REL++LN  ++I++ D+R  E R  T  Y+GGI ++V +L++ K+
Sbjct: 187 KETTVYEYDILAHRIRELAYLNRGIRITIADEREGEERSTTYHYEGGIRSYVEHLNQSKE 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+      + G +D IS+++AM++N G+  N+  F NNI   +GGTH SG ++ALTR I 
Sbjct: 247 PIHDPID-VLGEKDGISVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTRVIN 305

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K    K+   ++ G+D REG T+++S+K PDP+F  QTK KL +SEV  +  +  +
Sbjct: 306 DYARKGGLLKEADANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNALFS 365

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           DG   ++ E+P  A+ +V+K L A+  R AA++AR+ TRRK  L+++SLPGKLADCS  +
Sbjct: 366 DGFERFMLENPTVARKVVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCSSTN 425

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P   E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR DK+LS+ EI  +ITA 
Sbjct: 426 PADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMITAF 485

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG++ F++ K RYHKIIIMTDADVDGAHIRTLLLTFFFR +  LI  G++YI +PPL
Sbjct: 486 GTGIGEE-FNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQPPL 544

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y + +GK ++Y  D+E+L++ L       +         G ++   L +
Sbjct: 545 YQVKQGKHVEYCYDDETLKEILERLPKMPKPNVQRYKGLGEMNAEQLWD 593



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 66/87 (75%), Gaps = 2/87 (2%)

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                +L+ +  + +   ++QRYKGLGEMNA QLW+TT++P+ R+LL+V++ DA +A+  
Sbjct: 560 ETLKEILERLPKMPK--PNVQRYKGLGEMNAEQLWDTTMDPEHRTLLQVELDDAIKANQA 617

Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803
           F RLMGDEVEPRR+FI+EN++ + LDI
Sbjct: 618 FERLMGDEVEPRRQFIEENAVYANLDI 644


>gi|19909691|dbj|BAB87041.1| DNA gyrase subunit B [Halobacterium salinarum]
          Length = 575

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/555 (49%), Positives = 365/555 (65%), Gaps = 4/555 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
              GLHH++YEV+DN+IDE+L GY D I VTL+ DGS +V+D+GRGIP   H+E    A 
Sbjct: 1   DARGLHHLVYEVVDNSIDEALAGYCDRIDVTLHDDGSVSVTDDGRGIPVATHEEYDRPAV 60

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVI+T LHAGGKF+ KSY+VSGGLHGVGVSVVNALS  L + + R+G  Y   F  G   
Sbjct: 61  EVILTVLHAGGKFDAKSYQVSGGLHGVGVSVVNALSERLAVEVSRDGARYREQFERGEPV 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L   G + +D+GT + F P S+IF    +++ TL++RLREL+FLNS V+I+L D+R  
Sbjct: 121 TDLQHVGDS-DDSGTLIRFRPDSEIFETTAYDFSTLENRLRELAFLNSGVEITLTDERGD 179

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           EP + T  Y+GGI  FV YL+  +  L    I  QG  D IS+++AM+ ++    +   F
Sbjct: 180 EPTQSTFEYEGGIREFVEYLNETRNALHDDVIYFQGEDDGISVEIAMQASEDVQSSTHAF 239

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMP 335
            NNI  ++GGTHL+G ++ALTR +  Y   +    +    ++ GDD REG T+V+S+K P
Sbjct: 240 ANNINTREGGTHLTGFKTALTRTVNDYANDNNLLSELDGENLTGDDIREGLTAVISVKHP 299

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL +SEVR +VE  VNDGL  + EE+P  AK +V+  ++A+  R AA++A
Sbjct: 300 DPQFEGQTKTKLGNSEVRGIVERAVNDGLGTYFEENPATAKAVVRTAVEAAKARKAAKKA 359

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
            +LTRRK  L   SLPGKLADC  + P+ +ELF+VEGDSAGGSAKQGR+   QAILPL G
Sbjct: 360 EELTRRKSALGSTSLPGKLADCQSKAPEDAELFVVEGDSAGGSAKQGRNPGFQAILPLGG 419

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ R D++L   E+  +ITALGTGIG D FDI++LRY  II+MTDADVDGAHIRT
Sbjct: 420 KILNVEKHRLDRILEHDELRHIITALGTGIG-DEFDIDELRYENIIMMTDADVDGAHIRT 478

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIEL 574
           LLLTFF+R M  L+  G++Y  +PPLY I    +      E   E  +  Q   +     
Sbjct: 479 LLLTFFYRHMKPLLEAGYVYAAQPPLYRIRYRGNTYDAMTEADRERIVEEQCNGNPTQVQ 538

Query: 575 FCDSKGVISKNDLRN 589
                G ++   L +
Sbjct: 539 RFKGLGEMNPQQLWD 553



 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            +QR+KGLGEMN  QLW+TT++P+ R L R+ + DA+ AD
Sbjct: 536 QVQRFKGLGEMNPQQLWDTTMDPENRILKRITVEDAAAAD 575


>gi|251810787|ref|ZP_04825260.1| DNA topoisomerase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805715|gb|EES58372.1| DNA topoisomerase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 664

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 272/595 (45%), Positives = 374/595 (62%), Gaps = 16/595 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY D I
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGDAI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVT+N DGS ++ DNGRG+PT +H   G   AEVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  TVTINQDGSISIEDNGRGMPTGIH-VSGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS WL++ I R+GNIY  +F N GI    LV TG       T+VTF P S+IF 
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDSEIFK 178

Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FN+D L  RL+E +FL   ++I+L D RS + RE    Y+ GI+ FVSY++  K+ 
Sbjct: 179 STTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNEGKEV 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    
Sbjct: 239 LH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNE 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL +SE RS V+S V
Sbjct: 298 YARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVV 357

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL    
Sbjct: 358 SEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQ 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I
Sbjct: 418 SKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   F I    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  
Sbjct: 478 HTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIAL 536

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY +     + K ++Y   +E LE+          I       G ++   L  
Sbjct: 537 PPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGF-ILQRYKGLGEMNPEQLWE 590



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     ++  ++  L        SKN 
Sbjct: 362 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 420

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                ++   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 421 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 479 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 538

Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L        K++       L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 539 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 598

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV++ D  ++    + LMGD+V PRRE+I+++
Sbjct: 599 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 633


>gi|293366680|ref|ZP_06613356.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|38604846|sp|Q8CSN9|PARE_STAES RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|84029387|sp|Q5HPI6|PARE_STAEQ RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|291318981|gb|EFE59351.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 664

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 272/595 (45%), Positives = 374/595 (62%), Gaps = 16/595 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY D I
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGDAI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVT+N DGS ++ DNGRG+PT +H   G   AEVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  TVTINQDGSISIEDNGRGMPTGIHAS-GKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS WL++ I R+GNIY  +F N GI    LV TG       T+VTF P S+IF 
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDSEIFK 178

Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FN+D L  RL+E +FL   ++I+L D RS + RE    Y+ GI+ FVSY++  K+ 
Sbjct: 179 STTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNEGKEV 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L        G  + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    
Sbjct: 239 LH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNE 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL +SE RS V+S V
Sbjct: 298 YARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVV 357

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL    
Sbjct: 358 SEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQ 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I
Sbjct: 418 SKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G   F I    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  
Sbjct: 478 HTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIAL 536

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY +     + K ++Y   +E LE+          I       G ++   L  
Sbjct: 537 PPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGF-ILQRYKGLGEMNPEQLWE 590



 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     ++  ++  L        SKN 
Sbjct: 362 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 420

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                ++   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 421 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 479 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 538

Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L        K++       L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 539 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 598

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV++ D  ++    + LMGD+V PRRE+I+++
Sbjct: 599 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 633


>gi|313835161|gb|EFS72875.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA2]
 gi|314929137|gb|EFS92968.1| DNA gyrase, B subunit [Propionibacterium acnes HL044PA1]
 gi|314970916|gb|EFT15014.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA3]
          Length = 690

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 271/583 (46%), Positives = 364/583 (62%), Gaps = 15/583 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             + SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I
Sbjct: 38  TVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTI 96

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGVG
Sbjct: 97  QVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVG 156

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSSDI 181
            SVVNAL++   + ++R+G  +  SF  G  D PL      G    + GT V F PS +I
Sbjct: 157 SSVVNALAAHFVVEVRRDGYHWRQSFTLGEPDGPLEQLEALGPDDCE-GTTVRFQPSDEI 215

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY 235
           F    F Y+TL +R RE++FLN  ++I L D+R         P      YK G++ +V +
Sbjct: 216 FDAIVFGYETLSNRFREMAFLNKGLRIVLTDRRADHADEEGNPVHEDFLYKEGLKDYVRF 275

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L   +  +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R
Sbjct: 276 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYTTSVHTFANAINTIEGGAHEEGFR 335

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +
Sbjct: 336 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 395

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412
           S V+  +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPG
Sbjct: 396 SFVQKTLNEKLSDWFEENPNEGKNIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPG 455

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DCS   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+
Sbjct: 456 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 515

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G
Sbjct: 516 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 574

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
            +Y+ +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 575 HVYLAQPPLFRLRWTNSPHELAYSDEERDLLRADGLAHAKKLP 617



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 622 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 681

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 682 AKDVRFLDI 690


>gi|293363557|ref|ZP_06610313.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
           alligatoris A21JP2]
 gi|292552906|gb|EFF41660.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
           alligatoris A21JP2]
          Length = 646

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/648 (41%), Positives = 381/648 (58%), Gaps = 18/648 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  +YDA +I+ L+GL+ V+KRP MYIG T  + GLHHMI+E++DN++DE + G+A  I 
Sbjct: 3   KAHNYDASNIKFLEGLEHVRKRPGMYIG-TTSKDGLHHMIWEIVDNSVDECMAGFASKIF 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +T+  D    V DNGRGIP   H+  GISA EV++T+L+AGGKF   +YKVSGGLHGVG 
Sbjct: 62  ITITNDNRIIVEDNGRGIPVGTHERFGISALEVVLTKLNAGGKFESNAYKVSGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           SVVNALS  +K  +KR+G IY   F N G       V G   GN+TGT++ F P   I  
Sbjct: 122 SVVNALSDSMKAWVKRDGKIYHAEFANGGHTVQATHVIGEYEGNETGTKIEFHPDFSIME 181

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+ + +    ++++ LN S+ +S+ D R  +       Y  GI  +V  L+    P+
Sbjct: 182 NVPFDKELIIDHAKQIAHLNKSLFVSVKDLR--DDSYEEFKYDNGIIDYVRELNEGYSPI 239

Query: 244 MQSPIRIQGS--------RDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
               I  +G            I +++A ++ +D    N++ + NNI   +GGTH+SG   
Sbjct: 240 NPEIIFAEGEFLSVHNGQERQIGVEVAAQYLSDFPRSNIISYANNISTHEGGTHVSGFYD 299

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ++ R + +Y  ++   K D      +D  EG T+++S+K PDP+F  QTK KL S + R 
Sbjct: 300 SVMRIVNNYAIENGIIKTDAEKFSREDLTEGLTTIISVKHPDPQFEGQTKGKLGSKDARM 359

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V    ++     L E+PL AK I++  + A   R AA  ARD  +RK   D   LPGKL
Sbjct: 360 AVNKVFSEVYERMLNENPLIAKKIIENAIYARKGRLAANAARDNAKRKSAFDNGGLPGKL 419

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+ ++ + SEL+LVEG+SAGGSAK GR R  QAILPLRGK+LNVERAR DK+++++EI
Sbjct: 420 ADCATKNAELSELYLVEGNSAGGSAKMGRDRNTQAILPLRGKVLNVERARQDKVVNNEEI 479

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L+TALGT +G D+F+INKLRYHKI+IMTDADVDGAHIRTLLLTFF+R    LI  GF+
Sbjct: 480 MSLVTALGTSLG-DTFNINKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYFKPLIEYGFV 538

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDD 593
           YI +PPLY I + K+++Y  ++   E+     + +++I        G +  + L     D
Sbjct: 539 YIAQPPLYKIQQNKTVEYAYNDAQKEEITSKLNPNQKINIQRYKGLGEMDPDQLWETTMD 598

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                 L       +   +    ++    N E  +E     A  + N 
Sbjct: 599 PKNRKMLQVQIEDAYKADWAFSTLMG--ENVEPRREFIEKNAKYVKNI 644



 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           I++QRYKGLGEM+  QLWETT++P  R +L+V+I DA +AD  FS LMG+ VEPRREFI+
Sbjct: 576 INIQRYKGLGEMDPDQLWETTMDPKNRKMLQVQIEDAYKADWAFSTLMGENVEPRREFIE 635

Query: 794 ENSLPS-ALD 802
           +N+     +D
Sbjct: 636 KNAKYVKNID 645


>gi|289550859|ref|YP_003471763.1| Topoisomerase IV subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|315658360|ref|ZP_07911232.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus
           lugdunensis M23590]
 gi|289180391|gb|ADC87636.1| Topoisomerase IV subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|315496689|gb|EFU85012.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus
           lugdunensis M23590]
          Length = 666

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 267/599 (44%), Positives = 375/599 (62%), Gaps = 17/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY
Sbjct: 1   MTVN-KKNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+N D S T+ DNGRG+PT +H   G    +VI T LHAGGKF Q  YK SGGL
Sbjct: 59  GDEINVTINKDNSITIEDNGRGMPTGIHAS-GKPTVQVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+GNIY+ SF N G+    L V       TGT+VTF P  
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYKQSFKNGGLPATGL-VKAGKTKKTGTKVTFKPDP 176

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     F++ TL  RL+E +FL  +++I L D RS + RE    Y+ GI+ FVSY++ 
Sbjct: 177 EIFKASTTFSFQTLSERLQESAFLLKNLKIKLTDLRSGKEREELYHYEEGIKEFVSYVNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G    I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 GKEVLH-DVTMFSGQSHGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K+  +++ G+D REG T+++S+++P+   +F  QTK KL ++E RS V
Sbjct: 296 VFNDYARRINELKEKDKNIDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTTEARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S V + L  +LEE    +K +VKK + A   R+AAR+ARD   + +K       L GKL
Sbjct: 356 DSVVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKARDDARSGKKNKRKDTLLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI
Sbjct: 416 TPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G D F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G +
Sbjct: 476 NTIIHTIGAGVGND-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534

Query: 535 YIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +I  PPLY + +G    K ++Y   ++ L+    +              G ++   L  
Sbjct: 535 FIALPPLYKLEKGKGKAKQVEYAWTDDELDKLQQSLGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKARDDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           + ++           +      F F      + + R+      +  L    G   ++   
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKAKQVEYA 557

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG ++QRYKGLGEMN  QLWETT+NPDTR+L+RV++ D  ++    
Sbjct: 558 WTDDELDKLQQSLGKGFTLQRYKGLGEMNPEQLWETTMNPDTRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V PRRE+I+ +
Sbjct: 618 TTLMGDKVAPRREWIERH 635


>gi|21309845|gb|AAM46064.1|AF263924_3 DNA gyrase beta subunit [Peanut witches'-broom phytoplasma]
          Length = 648

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 271/649 (41%), Positives = 390/649 (60%), Gaps = 23/649 (3%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS N + +      Y A SI+IL+GL+AV+K+P MYI       G +H+I+E++DN+IDE
Sbjct: 1   MSKNDKKNKENLGEYSASSIEILEGLEAVRKKPGMYIDSV-TMKGAYHLIWEIIDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQ 111
           +L GYA  I + +  D   +VSDNGRGIP D+H +   SA E I+T LHAGGKF    N 
Sbjct: 60  ALAGYATEIILKIFPDNVVSVSDNGRGIPVDIHPKTKKSAVETILTTLHAGGKFKNAPNS 119

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           K+Y  SGG HGVG SVVNALS+W  + I   G IY   +  G+    L + G+  N  GT
Sbjct: 120 KNYSYSGGQHGVGASVVNALSTWFTVEICLNGKIYYQKYEKGVPTTSLQIIGNT-NKRGT 178

Query: 172 EVTFLPSSDIFS---VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            + FLP   IF       ++ D L+ R+++L+FLN +V++ + D R   P+ I  + KGG
Sbjct: 179 NIKFLPDETIFQDIKNTPYSLDVLKKRVQQLAFLNKNVKLIIEDLRLEPPQIINFYSKGG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ ++ YL+ +KK L Q P   + S +NI +++A ++N+ Y  N+  F NNIP  +GGTH
Sbjct: 239 IQEYLQYLNENKKVLNQ-PFYQESSENNIFLEIAFQYNENYISNIYSFVNNIPTHEGGTH 297

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G + AL R ++ Y +      K   S IG+D  EG T+++++K  DP F  QTK +L 
Sbjct: 298 EEGFKMALNRILSKYAKDKN-LLKKDLSFIGEDTLEGITAIIALKHYDPLFEGQTKARLG 356

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           + ++R  V       L ++L E+P EAK I+ K L A+  R AA++AR++TR+K  LD  
Sbjct: 357 NYDMRQFVSKHFGIALESYLLENPQEAKKIIDKCLLAAKARVAAKKAREITRKKSPLDTL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           S   KLADC  +DP  +EL++VEGDSAGGSAKQGR    QAILPLRGKI+NVE+AR +K+
Sbjct: 417 SFASKLADCRTKDPSLAELYIVEGDSAGGSAKQGRDSSFQAILPLRGKIINVEKARLNKI 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           L + EI +LI + GTG  ++ F+I+K RYHKIIIMTDADVDGAHIRTLLLTFFFRQ   L
Sbjct: 477 LVNNEIISLIQSFGTGFDKE-FNISKARYHKIIIMTDADVDGAHIRTLLLTFFFRQFRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           I N ++Y  +PPLY +   K + Y   E+ L++++  ++ S++ +       G ++   L
Sbjct: 536 IENNYIYFAQPPLYKVQNNKKISYFYTEQDLKNFMSRKNNSQKIVVQRYKGLGEMNAEQL 595

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                    +D   +       +  +E   I  +   E      + +  
Sbjct: 596 WET-----TMDPATRTLLQVKLEDAVEADRIFTMLMGEEVSNRKIFIQE 639



 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +   + + +++ + +       +K ++ S      ++      V    +    
Sbjct: 465 IINVEKARLNKILVNNEIISLIQSFGTGFDKEFNISKARYHKIIIMTDADVDGAHIRTLL 524

Query: 681 SIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTIFSIGRKG--- 733
             F F     R F   IE NY+      L  + N  KI        L       RK    
Sbjct: 525 LTFFF-----RQFRPLIENNYIYFAQPPLYKVQNNKKISYFYTEQDLKNFM--SRKNNSQ 577

Query: 734 -ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
            I +QRYKGLGEMNA QLWETT++P TR+LL+VK+ DA +AD +F+ LMG+EV  R+ FI
Sbjct: 578 KIVVQRYKGLGEMNAEQLWETTMDPATRTLLQVKLEDAVEADRIFTMLMGEEVSNRKIFI 637

Query: 793 QENSLPSALDI 803
           QEN+  + +DI
Sbjct: 638 QENATYADIDI 648


>gi|73662713|ref|YP_301494.1| DNA topoisomerase IV subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495228|dbj|BAE18549.1| topoisomerase IV subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 666

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 271/670 (40%), Positives = 387/670 (57%), Gaps = 17/670 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L G+
Sbjct: 1   MAMN-KKNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+N D S T+ DNGRG+PT +H   G    +VI T LHAGGKF Q  YK SGGL
Sbjct: 59  GSEIQVTINKDESITIEDNGRGMPTGIH-TSGKPTVQVIFTILHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+GNIY  SF   G     L V       TGT+VTF P  
Sbjct: 118 HGVGASVVNALSEWLEVEIYRDGNIYTQSFAQGGKPTTGL-VKHGKTKKTGTKVTFKPDP 176

Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     FNYD L  RL+E +FL   ++I+L D R+ + RE    Y+ GI+ FV+Y++ 
Sbjct: 177 EIFKSATSFNYDVLSERLQESAFLLKRLKITLKDLRAGKEREDVFHYEDGIKEFVAYVNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G  +NI +++A ++ND Y E +L F NN+  KDGGTH  G +SA+TR
Sbjct: 237 GKEVLHDVAD-FSGEANNIEVEVAFQYNDQYSEGILSFVNNVRTKDGGTHEVGFKSAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K+  +++ G+D REG T+++SI++P+   +F  QTK KL + E RS V
Sbjct: 296 VFNDYARRINELKEKDKNLDGNDIREGLTAIISIRIPEELLQFEGQTKSKLGTPEARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S V D L  +LEE    +K +VKK L A   R+AAR+AR+   + +K       L GKL
Sbjct: 356 DSVVADKLPYYLEEKGQLSKSLVKKALKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++ +K EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR D +  ++EI
Sbjct: 416 TPAQSKNTEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G + F I    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G +
Sbjct: 476 NTIIHTIGAGVGNE-FKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVEAGRV 534

Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           +I  PPLY + +     + ++Y   +E LE           ++ +     + +       
Sbjct: 535 FIALPPLYKLEKGKGASRKIEYAWTDEELEKLQKKLGKGFSLQRYKGLGEMNADQLWETT 594

Query: 591 ID-DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           ++ D   + ++  +      K              E  +        +  + L+    + 
Sbjct: 595 MNPDTRTLIRVQVEDELRSSKRVTTLMGDKVAPRREWIENHVEFGLQEEQSILDNNEIQI 654

Query: 650 EKSWHGSINN 659
            +  H +   
Sbjct: 655 LEQEHPNEEE 664



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     ++  ++  L        SKN 
Sbjct: 364 PYYLEEKGQLSKSLVKKALKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 422

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                 +   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 423 --TEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKNEEINTIIH 480

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 481 TIGAGVGNEFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVEAGRVFIALPP 540

Query: 704 ILSLICNG---DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L        KI+       L+ +     KG S+QRYKGLGEMNA QLWETT+NPDTR
Sbjct: 541 LYKLEKGKGASRKIEYAWTDEELEKLQKKLGKGFSLQRYKGLGEMNADQLWETTMNPDTR 600

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV++ D  ++    + LMGD+V PRRE+I+ +
Sbjct: 601 TLIRVQVEDELRSSKRVTTLMGDKVAPRREWIENH 635


>gi|256823911|ref|YP_003147871.1| DNA gyrase subunit B [Kytococcus sedentarius DSM 20547]
 gi|256687304|gb|ACV05106.1| DNA gyrase subunit B [Kytococcus sedentarius DSM 20547]
          Length = 701

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 273/687 (39%), Positives = 391/687 (56%), Gaps = 60/687 (8%)

Query: 1   MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D       Q  SYDA S+Q+L+GL+AV+KRP MYIG T GE GLHH+++E++DNA+DE
Sbjct: 1   MADQPIQTDQQAPSYDASSLQVLEGLEAVRKRPGMYIGST-GERGLHHLVWEIVDNAVDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
            L G+AD I VT+  D +  V DNGRGIPTD+H +EGIS  E+++T+LHAGGKF   SY 
Sbjct: 60  HLAGHADRIEVTILPDNAIRVVDNGRGIPTDVHAKEGISGVELVLTQLHAGGKFGGDSYA 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVT 174
           VSGGLHGVG SVVNALSS  ++ ++++G+++  SF  G+ D PL      A + TGT +T
Sbjct: 120 VSGGLHGVGSSVVNALSSRFEVEVRQKGHVFRQSFTVGVPDAPLSKDEEIAEDVTGTTIT 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------- 215
           + PS++IF     +++TL+ R ++  FLN  + I L D+R                    
Sbjct: 180 YWPSAEIFDTTVIDFETLRARFQQTCFLNKGLTIQLTDERPRVTDADDEGLDDVDTDIAE 239

Query: 216 --------------------------PEPREITMFYKGGIEAFVSYLDRHKK--PLMQSP 247
                                      +PR +T  Y  G+  +V +L+  KK  P+    
Sbjct: 240 GLEEHEDGTPIEDGQPDADQPATAAATKPRTVTYRYDDGLLDYVRHLNNSKKTQPVNDEI 299

Query: 248 IRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           I  +       +  ++AM+W   Y E+V  + N++   +GGTH  G R+ALTR +  +  
Sbjct: 300 IAFETEDSERMLQCEVAMQWTSSYSESVHTYANSVNTHEGGTHEEGFRAALTRLVNEFAR 359

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +   K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL +SEV+  V+  + D L 
Sbjct: 360 ANKLLKEKDPALTGEDVREGLTAVISVKLGEPQFEGQTKTKLGNSEVKGFVQRAMADQLG 419

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WLE HP E K IV K + A+  R AAR+AR+ TRRKG+L+   L  KL DC   DP  S
Sbjct: 420 HWLEAHPGEGKAIVGKAVQAAQARLAARKAREATRRKGLLESGGLAAKLKDCQSNDPTVS 479

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+F+VEGDSAGGSA  GR+  NQAILPLRGKILNVE+AR D++LS+ E+  LI++ GTGI
Sbjct: 480 EIFIVEGDSAGGSAIAGRNPFNQAILPLRGKILNVEKARLDRILSNTEVQALISSFGTGI 539

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++ FDI + RYHKI++M DADVDG HIRTLLLT  FR M  LI +G++Y+ +PPLY + 
Sbjct: 540 GEE-FDITRARYHKIVLMADADVDGMHIRTLLLTLLFRFMKPLIEHGYVYLAQPPLYRLK 598

Query: 546 RGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
              +   +   +   +                +           N+ +            
Sbjct: 599 WTNAEHDFAFTDRERDALTEAGVAKGRRLPKENGVQRYKGLGEMNYQELWETTMDPDNRV 658

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEIN 631
                    + A    VF+    +++ 
Sbjct: 659 LRQVTMD--DAAAADQVFSVLMGEDVE 683



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LWETT++PD R L +V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 633 VQRYKGLGEMNYQELWETTMDPDNRVLRQVTMDDAAAADQVFSVLMGEDVESRRSFIQRN 692

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 693 AHDVRFLDI 701


>gi|314922686|gb|EFS86517.1| DNA gyrase, B subunit [Propionibacterium acnes HL001PA1]
          Length = 685

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 265/561 (47%), Positives = 357/561 (63%), Gaps = 13/561 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              + SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D 
Sbjct: 32  TTVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDT 90

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L  D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGV
Sbjct: 91  IQVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGV 150

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181
           G SVVNAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +I
Sbjct: 151 GSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEI 210

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235
           F    F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +
Sbjct: 211 FDAIVFDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRF 270

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L   +  +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R
Sbjct: 271 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFR 330

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  + E     KK +  V GDD REG  +V+SIK+ +P+F  QTK KL ++E +
Sbjct: 331 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLIAVVSIKLTEPQFEGQTKTKLGNAEAK 390

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412
           S V+  +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPG
Sbjct: 391 SFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGSTSLPG 450

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DCS   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+
Sbjct: 451 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 510

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G
Sbjct: 511 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 569

Query: 533 FLYIIKPPLYGITRGKSLQYV 553
            +Y+ +PPL+ +    S   +
Sbjct: 570 HVYLAQPPLFRLRWTNSPHEL 590



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 677 AKDVRFLDI 685


>gi|328905793|gb|EGG25569.1| DNA gyrase, B subunit [Propionibacterium sp. P08]
          Length = 681

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 271/583 (46%), Positives = 364/583 (62%), Gaps = 15/583 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             + SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I
Sbjct: 29  TVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTI 87

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGVG
Sbjct: 88  QVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVG 147

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSSDI 181
            SVVNAL++   + ++R+G  +  SF  G  D PL      G    + GT V F PS +I
Sbjct: 148 SSVVNALAAHFVVEVRRDGYHWRQSFTLGEPDGPLEQLEALGPDDCE-GTTVRFQPSDEI 206

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY 235
           F    F Y+TL +R RE++FLN  ++I L D+R         P      YK G++ +V +
Sbjct: 207 FDAIVFGYETLSNRFREMAFLNKGLRIVLTDRRADHADEEGNPVHEDFLYKEGLKDYVRF 266

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L   +  +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R
Sbjct: 267 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYTTSVHTFANAINTIEGGAHEEGFR 326

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +
Sbjct: 327 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 386

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412
           S V+  +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPG
Sbjct: 387 SFVQKTLNEKLSDWFEENPNEGKNIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPG 446

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DCS   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+
Sbjct: 447 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 506

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G
Sbjct: 507 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 565

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
            +Y+ +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 566 HVYLAQPPLFRLRWTNSPHELAYSDEERDLLRADGLAHAKKLP 608



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 613 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 672

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 673 AKDVRFLDI 681


>gi|116617179|ref|YP_817550.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096026|gb|ABJ61177.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 672

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 277/626 (44%), Positives = 396/626 (63%), Gaps = 12/626 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + + +   Y+AD IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A
Sbjct: 30  TVDAKAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 88

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             ITVT+  D S TV+D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLH
Sbjct: 89  SHITVTIEKDNSITVTDDGRGIPVDIQTKTGKPALETVFTVLHAGGKFGGGGYKVSGGLH 148

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSD 180
           GVG SVVNALS+ L +++ R+  +Y M F  G +   +         + GT V F P +D
Sbjct: 149 GVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIERGTIVHFKPDTD 208

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     +NY TL  R+REL+FLN  ++IS+ DKR  EP + +  ++GGI+ +V YL+  
Sbjct: 209 IFRETTTYNYKTLLTRVRELAFLNKGLRISIADKRLEEPIKESFHFEGGIKEYVQYLNED 268

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ +   P+ ++G  + I ++ A+++     +++  F NNI   +GGTH +G ++ALTR 
Sbjct: 269 KQVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFANNINTYEGGTHETGFKTALTRV 328

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  KS   K    S+ G+D REG T+++SIK PDP+F  QTK KL +S+ R   +  
Sbjct: 329 INDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 388

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++  S ++ E+P  AK IV+K + A   R AA+RAR++TR++  L+I +LPGKLAD + 
Sbjct: 389 FSETFSRFMMENPNVAKQIVEKGVLAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 448

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNV +A  +++L+++EI +L T
Sbjct: 449 NDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKASLERVLANEEIRSLFT 508

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTG G D F++ K  YHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G++YI +P
Sbjct: 509 AMGTGFG-DDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAGYIYIAQP 567

Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALK 596
           PLYG+     KS+ Y+  +E LE YL     + +         G +  + L +   DA  
Sbjct: 568 PLYGVALGNNKSMTYLDSDEELESYLSQLPSNVKPKVQRYKGLGEMDYDQLADTTMDAQN 627

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
                +           E   +  + 
Sbjct: 628 -----RRLLRVDPADAEEAEAVIDML 648



 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QL +TT++   R LLRV   DA +A+ +   LMG +V PRR+FI++N
Sbjct: 604 VQRYKGLGEMDYDQLADTTMDAQNRRLLRVDPADAEEAEAVIDMLMGGDVPPRRKFIEDN 663

Query: 796 SLPS-ALDI 803
           ++    LDI
Sbjct: 664 AVFVENLDI 672


>gi|15826870|ref|NP_301133.1| DNA gyrase subunit B [Mycobacterium leprae TN]
 gi|221229348|ref|YP_002502764.1| DNA gyrase subunit B [Mycobacterium leprae Br4923]
 gi|13638292|sp|Q59533|GYRB_MYCLE RecName: Full=DNA gyrase subunit B
 gi|13092417|emb|CAC29513.1| putative DNA gyrase subunit B [Mycobacterium leprae]
 gi|219932455|emb|CAR70098.1| putative DNA gyrase subunit B [Mycobacterium leprae Br4923]
          Length = 678

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/655 (41%), Positives = 383/655 (58%), Gaps = 41/655 (6%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y A SI IL+GL+AV+KRP MY+G T GE GLHH+I+EV+DN++DE++ GYA
Sbjct: 3   AQRKAQDEYGAASITILEGLEAVRKRPGMYVGST-GERGLHHLIWEVVDNSVDEAMAGYA 61

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119
             + V L  DGS  V+DNGRGIP  +H   G+   +V+MT+LHAGGKF      Y VSGG
Sbjct: 62  TQVDVRLFDDGSVEVADNGRGIPVAVHA-TGVPTVDVVMTQLHAGGKFGGKDSGYNVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS+ +++ IKR+G  +   +   +    ++  G A   TGT + F    
Sbjct: 121 LHGVGVSVVNALSTRVEVDIKRDGYEWSQFYDKAVP--GILKQGEATEATGTTIRFWADP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------- 214
           DIF    +++ T+  R++E++FLN  + I+L+D+R                         
Sbjct: 179 DIFETTKYDFGTVARRIQEVAFLNKGLTINLVDERVKQDEVVDDVVSDTAEAPVAMTVEE 238

Query: 215 -------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
                    + R  T  Y GG+  FV +++R K P+ QS I   G      +++AM+WN 
Sbjct: 239 KSTESSAPHKVRHRTFHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGAGHEVEVAMQWNG 298

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  
Sbjct: 299 GYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLA 358

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P++AK +V K + ++ 
Sbjct: 359 AVISVKVSEPQFEGQTKTKLGNTEVKSFVQRVCNEQLIHWFEANPVDAKAVVNKAISSAQ 418

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AAR+AR+L RRK   D+  LPGKLADC   DP+ SEL++VEGDSAGGSAK GR    
Sbjct: 419 ARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRSSELYVVEGDSAGGSAKSGRDSMF 478

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI++LRYHKI++M DAD
Sbjct: 479 QAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISRLRYHKIVLMADAD 537

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDG HI TLLLT  FR M  LI +G++++ +PPLY +   +        +S  D L+   
Sbjct: 538 VDGQHISTLLLTLLFRFMRPLIEHGYVFLAQPPLYKLKWQRMDPEFAYSDSERDGLLETG 597

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           L    ++  +    I +      +D     +  +        +  ++ A  +   
Sbjct: 598 LKLGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 650



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 61/87 (70%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL+T   +G+K I+    +QRYKGLGEM+A +LWETT++P  R L +V + DA+ AD+LF
Sbjct: 593 LLETGLKLGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 651

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++V+ RR FI  N+     LD+
Sbjct: 652 SILMGEDVDARRSFITRNAKDVRFLDV 678


>gi|302535567|ref|ZP_07287909.1| DNA gyrase subunit B [Streptomyces sp. C]
 gi|302444462|gb|EFL16278.1| DNA gyrase subunit B [Streptomyces sp. C]
          Length = 666

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 283/667 (42%), Positives = 394/667 (59%), Gaps = 25/667 (3%)

Query: 1   MSD--NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+D  +    +YDA +IQ+L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L 
Sbjct: 1   MADSGDSNEKNYDASAIQVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+AD I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSG
Sbjct: 60  GHADTIDVTILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ + + +K +G+ +   +  G+   PL        +TGT VTF   
Sbjct: 120 GLHGVGVSVVNALSTKVAVEVKTDGHRWTQDYKLGVPTAPLAKNEETA-ETGTSVTFWAD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----------------SPEPREI 221
            DIF   +++++TL  R +E++FLN  + ++L D+R                  P  R +
Sbjct: 179 GDIFETTEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADDPDADAAEPSARTV 238

Query: 222 TMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278
             FY+GGI  FV Y   R  + +  + I ++       +S+++AM+WN  Y E V  F N
Sbjct: 239 KYFYEGGIVDFVKYLNSRKGELIHPTVIDVESEDKERMLSVEIAMQWNSQYTEGVYSFAN 298

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+
Sbjct: 299 TIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREGLTAIISVKLGEPQ 358

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++E ++ V+  V++ L+ W + +P+EA  IV+K + A+  R AAR+ARDL
Sbjct: 359 FEGQTKTKLGNTEAKTFVQKVVHEHLNDWFDRNPVEAADIVRKAIQAATARVAARKARDL 418

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKIL
Sbjct: 419 TRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKIL 478

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NVE+AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLL
Sbjct: 479 NVEKARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLL 537

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TF FR M  L+  G +Y+ +PPLY I  G+        +   D L+         +  DS
Sbjct: 538 TFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDS 597

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                     N  +  +    +              QA          D E   S   + 
Sbjct: 598 IQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRN 657

Query: 639 ANRLNFI 645
           A  + F+
Sbjct: 658 AKDVRFL 664



 Score =  140 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +G+      K  S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 580 DALVELGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLF 639

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 640 SVLMGEDVEARRSFIQRNAKDVRFLDI 666


>gi|291543406|emb|CBL16515.1| DNA gyrase subunit B [Ruminococcus sp. 18P13]
          Length = 649

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/578 (47%), Positives = 385/578 (66%), Gaps = 12/578 (2%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS+  Q       YD   IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+
Sbjct: 1   MSETEQIKPGAQQYDESQIQVLEGLEAVRKRPGMYIGTTGSG-GLHHLVYEIVDNSIDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L GY   I V +       V+DNGRGIPT +H +EGISAA V+ T LHAGGKF    YKV
Sbjct: 60  LAGYCTHIQVEILPGDIIRVTDNGRGIPTGIHPKEGISAATVVYTVLHAGGKFGGGGYKV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           +GGLHGVG SVVNALS WL+L +K   +++   F  G    PL + G    + GT V F 
Sbjct: 120 AGGLHGVGASVVNALSEWLELTVKDGSHVHFQRFERGNYAEPLKIIGDTT-EHGTSVMFK 178

Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLI-DKRSPEPREITMFYKGGIEAFVS 234
           P ++IF     F+Y+ L  R+RE +FLN+ + I L   +    P+   M Y+GGI  F+ 
Sbjct: 179 PDAEIFEETTVFDYEVLLKRMREQAFLNAGLTIELSDQRDPANPQGEKMCYEGGIRQFIE 238

Query: 235 YLDRHK--KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++ + +  + L +  I   GS+ + ++++AM++ND Y+E +L F NN+   DGG H  G 
Sbjct: 239 HIHKTRGLESLSEQVIYFTGSKGDNAVEIAMQYNDSYNELILSFANNVHTIDGGMHELGF 298

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALT+ +  Y ++     KD   ++G+D REG T+++S+K+ D +F SQTK KL + E+
Sbjct: 299 RNALTKTLNEYGKRFG-LLKDDSKLMGEDVREGLTAIISVKLTDCQFESQTKVKLGNPEI 357

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +  VES V++ L  +LEE+P  A+ I  K L A   R+AA++AR+  RRK  ++ ASLPG
Sbjct: 358 KPFVESIVSEKLMNYLEENPAVARAIFDKSLAAQRAREAAKKARETARRKTAMESASLPG 417

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCSERD + +E+++VEGDSAGGSAK+GR R  QAILPL GK+LNVE+AR DK+  ++
Sbjct: 418 KLADCSERDIEMTEIYIVEGDSAGGSAKEGRDRRYQAILPLWGKMLNVEKARIDKVYCNE 477

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           ++  ++TALGT IG+D FDI+KLRY K+IIM DADVDG+HIRTLLLTFFFR M  LI NG
Sbjct: 478 KLMPVVTALGTSIGED-FDISKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPLITNG 536

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            +YI +PPL+ + +GK+ +Y   +E  + Y+   +   
Sbjct: 537 NIYIAQPPLFRVAKGKTFKYAFSDEERDKYIAQFNAES 574



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 60/71 (84%), Gaps = 1/71 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +QRYKGLGEM+A QLW+TT+NPDTR++++V++ DA +AD+ FS LMGD+V PRREFI+
Sbjct: 579 VEVQRYKGLGEMDAHQLWDTTMNPDTRTMIKVEMADAVKADETFSILMGDKVAPRREFIE 638

Query: 794 ENSLPS-ALDI 803
           +N+  +  LDI
Sbjct: 639 KNAKYAQNLDI 649


>gi|295396857|ref|ZP_06806985.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aerococcus viridans ATCC
           11563]
 gi|294974883|gb|EFG50582.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aerococcus viridans ATCC
           11563]
          Length = 707

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/686 (39%), Positives = 381/686 (55%), Gaps = 19/686 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++    S+YD  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN+IDE+  GYA
Sbjct: 16  TNQNNKSTYDESSIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSIDEAFSGYA 74

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D ITVTL  DGS  V+DNGRG+P   H   G    EVI+T LHAGGKF    YK SGGLH
Sbjct: 75  DHITVTLAKDGSAIVTDNGRGMPIGKH-TSGKPTVEVILTVLHAGGKFGGSGYKTSGGLH 133

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALSS     + R+G  Y   F NG              +TGT++ F P ++I
Sbjct: 134 GVGSSVVNALSSKFIATVHRDGKEYYQEFTNGGKPGKPKTKAFKSKNTGTKIQFYPDAEI 193

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F+  T++  LRE +FL   ++I  ID+ +      T  Y  GI+AFV YL+  K 
Sbjct: 194 FGNIKFDPSTIREHLRESAFLLKDLRIDFIDEINETE--ETFHYAEGIKAFVDYLNEDKD 251

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L    +  QG  + I I+LA ++NDGY E VL F NN+   DGGTH SG+R+ LT+   
Sbjct: 252 VLH-DVVFFQGVENGIEIELAFQYNDGYSETVLSFVNNVRTADGGTHESGMRTGLTKSFN 310

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359
            Y  K    K  ++++ G D REG+T+VLS+++P+   +F  QTK KL + + RS  +  
Sbjct: 311 EYARKVDLLKTKEKNLEGSDVREGYTAVLSLRVPEEILQFEGQTKSKLGTPQARSASDKI 370

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCS 418
           V++ L+ +L E+   A+++V+K L A   RDAAR+AR+ +R  KG      L GKL    
Sbjct: 371 VSENLAVYLIENGETAQMLVRKALKAREARDAARKAREASRGAKGKRKEVLLSGKLTPAQ 430

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A    +L ++E+ T+I
Sbjct: 431 GRNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKASIQDILKNEELNTII 490

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G + F++    Y K+IIMTDAD DGAHI+ LLLTFFFR M  L+  G +Y+  
Sbjct: 491 YTIGAGVGAE-FEVEDANYDKVIIMTDADTDGAHIQVLLLTFFFRYMKPLVEAGKVYLAM 549

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           PPLY ++    + +  +Y   ++ L+           I       G ++ + L       
Sbjct: 550 PPLYKVSKGKGKNEITEYAWTDDELKAVTDKVGKGY-ILQRYKGLGEMNADQLWET---- 604

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
             +D   +                  V      +     +   +A  ++      E +  
Sbjct: 605 -TMDPETRTLVRVTIDDLSLAEKRVSVLMGNKVEPRRKWIEDNVAFTMDEEDTLLENASD 663

Query: 655 GSINNSDILVKRIARGVQEQFVLEGS 680
               + + +V+ +    Q        
Sbjct: 664 NDAGDKEEVVEILENQNQTSVTANED 689



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E     ++    +L   +  I       +     N D ++           +    
Sbjct: 469 VLNTEKASIQDILKNEELNTIIYTIGAGVGAEFEVEDANYDKVIIMTDADTDGAHIQVLL 528

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F F      + + ++      +  +     K +IT        L  +     KG  +Q
Sbjct: 529 LTFFFRYMKPLVEAGKVYLAMPPLYKVSKGKGKNEITEYAWTDDELKAVTDKVGKGYILQ 588

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT++P+TR+L+RV I D S A+   S LMG++VEPRR++I++N
Sbjct: 589 RYKGLGEMNADQLWETTMDPETRTLVRVTIDDLSLAEKRVSVLMGNKVEPRRKWIEDN 646


>gi|116494894|ref|YP_806628.1| DNA topoisomerase IV subunit B [Lactobacillus casei ATCC 334]
 gi|116105044|gb|ABJ70186.1| DNA topoisomerase IV subunit B [Lactobacillus casei ATCC 334]
          Length = 670

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 265/598 (44%), Positives = 369/598 (61%), Gaps = 15/598 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +    +Y+  SIQ+L GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+ D 
Sbjct: 2   DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNSVDEALAGFGDE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV D+GRG+PT +H   G    EVI+T LHAGGKFNQ SYK SGGLHGV
Sbjct: 61  INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS  L +R+ R+ + +E  FIN G  D  L   G      GT +TF P   IF
Sbjct: 120 GSSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+YDTL  RLRE +FL  ++ I+L D+R+ +    +  Y  G+ +FV YL+  K  
Sbjct: 180 QTTVFSYDTLAERLRESAFLLKNITINLTDERTGK--HDSYHYPDGLVSFVKYLNEGKDA 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +   I  +G +D I +D A ++NDGY EN++ F NN+   DGGTH  GLRS +TR    
Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           +  K    ++  +++ G D REGF  +LS+++P+   +F  QTK KL + + R+VV+  V
Sbjct: 297 FARKVGLLRERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
            D LS +L E+  E++ +V+K + A   R+AAR+ARD   T RK   D   L GKL    
Sbjct: 357 YDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   ++ ++EI T+I
Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G D FD+ +  Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 477 YTIGAGVGAD-FDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRIYIAL 535

Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PPLY + +       + Y   +E L            +  F     + +       ++
Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734
            + +F  +Y R  I + RI      +  L    G K KI+       L     ++G KG 
Sbjct: 513 LLLTFFYRYMRPLIDAGRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   + LMGD VEPRRE+I+ 
Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631

Query: 795 N 795
           N
Sbjct: 632 N 632


>gi|239631506|ref|ZP_04674537.1| DNA topoisomerase IV subunit B [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525971|gb|EEQ64972.1| DNA topoisomerase IV subunit B [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 670

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 369/598 (61%), Gaps = 15/598 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +    +Y+  SIQ+L GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+ D 
Sbjct: 2   DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNSVDEALAGFGDE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV D+GRG+PT +H   G    EVI+T LHAGGKFNQ SYK SGGLHGV
Sbjct: 61  INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS  L +R+ R+ + +E  FIN G  D  L   G      GT +TF P   IF
Sbjct: 120 GSSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+YDTL  RLRE +FL  ++ I+L D+R+ +    +  Y  G+ +FV YL+  K  
Sbjct: 180 QTTVFSYDTLAERLRESAFLLKNITINLTDERTGK--HDSYHYPDGLVSFVKYLNEGKDA 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +   I  +G +D I +D A ++NDGY EN++ F NN+   DGGTH  GLRS +TR    
Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           +  K    K+  +++ G D REGF  +LS+++P+   +F  QTK KL + + R+VV+  V
Sbjct: 297 FARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
            D LS +L E+  E++ +V+K + A   R+AAR+ARD   T RK   D   L GKL    
Sbjct: 357 YDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   ++ ++EI T+I
Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G D FD+ +  Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 477 YTIGAGVGAD-FDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRIYIAL 535

Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PPLY + +       + Y   +E L            +  F     + +       ++
Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734
            + +F  +Y R  I + RI      +  L    G K KI+       L     ++G KG 
Sbjct: 513 LLLTFFYRYMRPLIDAGRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   + LMGD VEPRRE+I+ 
Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631

Query: 795 N 795
           N
Sbjct: 632 N 632


>gi|70726555|ref|YP_253469.1| DNA topoisomerase IV subunit B [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447279|dbj|BAE04863.1| topoisomerase IV subunit B [Staphylococcus haemolyticus JCSC1435]
          Length = 666

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 267/599 (44%), Positives = 378/599 (63%), Gaps = 17/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    ++ Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY
Sbjct: 1   MATK-NSNHYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N D S ++ DNGRG+P+ +H   G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEINVTINQDNSISIEDNGRGMPSGMHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+GNIY+ SF N G+  + L V       TGT+VTF P  
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYKQSFKNGGVPASGL-VKSGKTKKTGTKVTFKPDP 176

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     FN++TL  RL+E +FL  +++I+L D R+ + RE    Y+ GI+ FVSY++ 
Sbjct: 177 EIFKATTTFNFETLSERLQESAFLLKNLKITLKDLRNGKEREDVYHYEEGIKEFVSYVNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G+ + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 GKEVLH-DVTMFTGASNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K+  +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V
Sbjct: 296 VFNDYARRINELKEKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S V+D L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL
Sbjct: 356 DSVVSDKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI
Sbjct: 416 TPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G D F I    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G +
Sbjct: 476 NTIIHTIGAGVGND-FKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +I  PPLY +     + K ++Y   ++ LE           +       G ++   L  
Sbjct: 535 FIALPPLYKLEKGKGKSKQVEYAWTDDELEKLQKKLGKGF-MLQRYKGLGEMNPEQLWE 592



 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     ++  ++  L        SKN 
Sbjct: 364 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 422

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                ++   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 423 --TEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 480

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 481 TIGAGVGNDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 540

Query: 704 ILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L    G   ++        L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 541 LYKLEKGKGKSKQVEYAWTDDELEKLQKKLGKGFMLQRYKGLGEMNPEQLWETTMNPETR 600

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV+I D  ++    + LMGD+V PRRE+I+ +
Sbjct: 601 TLIRVQIEDEMRSSKRVTTLMGDKVAPRREWIESH 635


>gi|160932418|ref|ZP_02079808.1| hypothetical protein CLOLEP_01253 [Clostridium leptum DSM 753]
 gi|156868377|gb|EDO61749.1| hypothetical protein CLOLEP_01253 [Clostridium leptum DSM 753]
          Length = 646

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 278/611 (45%), Positives = 398/611 (65%), Gaps = 12/611 (1%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M +N     N  Y A  IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DNAIDE+L
Sbjct: 1   MENNEITQTNEEYGASDIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEIVDNAIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I V +       V DNGRGIP  +  + GI A  V+ T LHAGGKF    YKVS
Sbjct: 60  AGYCDKIDVRILPGDIIVVEDNGRGIPVGIQPKMGIPAVTVVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+WL++ +    +IY   F  G     L + G     TGT+VTF  
Sbjct: 120 GGLHGVGASVVNALSTWLEVEVSDGAHIYRQRFERGKTITDLEMIGDTT-KTGTKVTFQA 178

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR-EITMFYKGGIEAFVS- 234
             +IFS    + Y+TL+ RLRE +FLN+ + I L+D+R PE R +    Y+GGI +FV  
Sbjct: 179 DPEIFSESTVYEYETLETRLREQAFLNAGIHIELVDERDPENRVQKNFLYEGGISSFVEF 238

Query: 235 -YLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            +  +  + +    I ++G  +  +   ++AM++N+ Y+E ++ F NNI   DGGTH  G
Sbjct: 239 LHKRKSLEVIHPDIIHVKGALTDGSAEAEVAMQYNESYNELLISFANNIHTTDGGTHEEG 298

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            + ALTR +  Y  K    K   +++ G+D REG T+++S+K+ + +F  QTK KL ++E
Sbjct: 299 FKRALTRIMNDYARKYNILKDGDKNLSGEDVREGLTAIISVKLKEAQFEGQTKAKLGNTE 358

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +R++V++ +++ LSA+LEE+P  A+ I +K + AS  R+AAR+AR+L RRK  L+ A+LP
Sbjct: 359 IRTLVDNLISEKLSAYLEENPATARAIFEKAMAASRAREAARKARELVRRKSALESAALP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  R+P+++E+++VEGDSAGGSAK GR R+ QAILPL GK+LNVE+AR DK+  +
Sbjct: 419 GKLADCQSRNPEETEIYIVEGDSAGGSAKGGRDRKFQAILPLWGKMLNVEKARLDKVYGN 478

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            ++  +ITALG GIG D FD+ KLRY K+IIM DADVDG+HIRTLLLTFFFR M  LI  
Sbjct: 479 DKLMPVITALGCGIG-DEFDLAKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMKPLIEE 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI +PPLY +T+GK+  Y   ++  +  L   +++  I+ +     + S+      +
Sbjct: 538 GHIYIAQPPLYRLTKGKNHYYAYSDKERDQMLKEMTVTAPIQRYKGLGEMDSEQLWETTM 597

Query: 592 DDALKIDKLIK 602
           +   +I   ++
Sbjct: 598 NPETRIMLKVE 608



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 58/69 (84%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM++ QLWETT+NP+TR +L+V++ DA+ AD+ F+ LMGD+VEPRREFI++N
Sbjct: 578 IQRYKGLGEMDSEQLWETTMNPETRIMLKVELEDAAAADETFTILMGDKVEPRREFIEKN 637

Query: 796 SLPS-ALDI 803
           +     LD+
Sbjct: 638 AKYVQNLDV 646


>gi|301066454|ref|YP_003788477.1| DNA topoisomerase IV subunit B [Lactobacillus casei str. Zhang]
 gi|300438861|gb|ADK18627.1| DNA topoisomerase IV subunit B [Lactobacillus casei str. Zhang]
          Length = 670

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 369/598 (61%), Gaps = 15/598 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +    +Y+  SIQ+L GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+ D 
Sbjct: 2   DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNSVDEALAGFGDE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV D+GRG+PT +H   G    EVI+T LHAGGKFNQ SYK SGGLHGV
Sbjct: 61  INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS  L +R+ R+ + +E  FIN G  D  L   G      GT +TF P   IF
Sbjct: 120 GSSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+YDTL  RLRE +FL  ++ I+L D+R+ +    +  Y  G+ +FV YL+  K  
Sbjct: 180 QTTVFSYDTLAERLRESAFLLKNITINLTDERTGK--HDSYHYPDGLVSFVKYLNEGKDA 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +   I  +G +D I +D A ++NDGY EN++ F NN+   DGGTH  GLRS +TR    
Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           +  K    K+  +++ G D REGF  +LS+++P+   +F  QTK KL + + R+VV+  V
Sbjct: 297 FARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
            D LS +L E+  E++ +V+K + A   R+AAR+ARD   T RK   D   L GKL    
Sbjct: 357 YDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   ++ ++EI T+I
Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G D FD+ +  Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 477 YTIGAGVGAD-FDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIEAGRIYIAL 535

Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PPLY + +       + Y   +E L            +  F     + +       ++
Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734
            + +F  +Y R  I + RI      +  L    G K KI+       L     ++G KG 
Sbjct: 513 LLLTFFYRYMRPLIEAGRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   + LMGD VEPRRE+I+ 
Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631

Query: 795 N 795
           N
Sbjct: 632 N 632


>gi|32448562|gb|AAO16798.1| ParE [Streptococcus pneumoniae]
          Length = 638

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 272/614 (44%), Positives = 386/614 (62%), Gaps = 18/614 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ D I VT+
Sbjct: 1   NYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 59

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SVV
Sbjct: 60  NKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 118

Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD 186
           N  SSWL++ I R+G IY+  F N G     L   G+A    TGT+VTF+P + IFS  D
Sbjct: 119 NLSSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDAGIFSTTD 178

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+T+  RL E +FL  +V +SL DKR+ E   +   Y+ G++ FVSYL+  K+ L   
Sbjct: 179 FKYNTISERLNESAFLLKNVTLSLTDKRTDES--VEFHYENGVQDFVSYLNEDKETLTPV 236

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
               +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T+ +  Y  K
Sbjct: 237 L-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARK 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R VV+  V D L
Sbjct: 296 TGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKL 355

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERDP 422
           + +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GKL     ++P
Sbjct: 356 TFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNP 415

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++EI T+I  +G
Sbjct: 416 AKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIG 475

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPLY
Sbjct: 476 AGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 534

Query: 543 GIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK-- 596
            ++    + + + Y   +  LE+          ++ +     + +       ++   +  
Sbjct: 535 KMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTL 594

Query: 597 IDKLIKDFYPNHDK 610
           I   I+D      +
Sbjct: 595 IRVTIEDLARAERR 608



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 370 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 429

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 430 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 489

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 490 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 549

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 550 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 609

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 610 NVLMGDKVEPRRKWIEDN 627


>gi|170780469|ref|YP_001708801.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155037|emb|CAQ00133.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. sepedonicus]
          Length = 664

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 262/591 (44%), Positives = 378/591 (63%), Gaps = 11/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +    ++ Y A+ IQ+L+GL+AV+KRP MYIG T G  GLHH++ E++DN++DE+L G+A
Sbjct: 14  TRQQVSNDYGANEIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVSEIVDNSVDEALAGFA 72

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I +T+  DG   V D+GRGIP D+H  EGIS  E+++T+LHAGGKF    Y VSGGLH
Sbjct: 73  SDIQITMRKDGGIRVVDDGRGIPVDIHPVEGISTVELVLTKLHAGGKFGGGGYAVSGGLH 132

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L + ++R+G ++  SF  G+ D PL   G    +TGT +TF PS +I
Sbjct: 133 GVGSSVVNALSERLDVEVRRQGAVWRQSFTIGVPDAPLEK-GEGSTETGTTITFWPSREI 191

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---EPREITMFYKGGIEAFVSY--L 236
           F   +F+YDTL+ R ++++FLN  + ++L D+R     E R     Y+ G+  +V +   
Sbjct: 192 FETVEFDYDTLRARFQQMAFLNKGLALTLHDEREEDGAEHRTEKFLYERGLVDYVEHLVK 251

Query: 237 DRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            +  + +    I  +       IS+++AM+W   Y E+V  + N I   +GGTH  G R+
Sbjct: 252 AKKTEVVNADVIAFESEDTVKKISLEVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRA 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALT  +  Y  ++   ++   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E ++
Sbjct: 312 ALTTLVNRYARENKLLREKDENLTGDDVREGLTAVISVKLGEPQFEGQTKTKLGNTEAKA 371

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V   L  WLE++P +AK I++K + AS  R AAR+AR+ TRRKG+L+   +PGKL
Sbjct: 372 YVQRIVGQQLGDWLEKNPSQAKDIIRKGMQASQARLAARKAREQTRRKGLLESGGMPGKL 431

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DC  +DP  SE+FLVEGDSAGGSA QGR+   QAILPLRGKILNVE+AR D+ L + E+
Sbjct: 432 KDCQSKDPAFSEVFLVEGDSAGGSAVQGRNPTTQAILPLRGKILNVEKARLDRALQNNEV 491

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            ++ITA G GIG+D F+  K+RYHKI++M DADVDG HI TLLLT  FR M  LI  G++
Sbjct: 492 QSMITAFGAGIGED-FNAEKVRYHKIVLMADADVDGQHITTLLLTLLFRYMRPLIELGYV 550

Query: 535 YIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           Y+ +PPLY +    +  QYV  +   +  LI+   + +     +       
Sbjct: 551 YLAQPPLYRLKWSNAEDQYVYTDAERDALLIHGQQNGKKLPKDNGIQRYKG 601



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  +LWETT++P TR+L++V + DA+ AD++FS LMG++VE RR FIQ N
Sbjct: 596 IQRYKGLGEMDYKELWETTMDPATRTLMQVTLDDAAGADEVFSTLMGEDVESRRSFIQRN 655

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 656 AKDVRFLDI 664


>gi|314936492|ref|ZP_07843839.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655111|gb|EFS18856.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 662

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 259/593 (43%), Positives = 366/593 (61%), Gaps = 16/593 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE L GY + I V
Sbjct: 2   TNHYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+N D S +V DNGRG+PT +H   G    EVI T LHAGGKF Q  YK SGGLHGVG S
Sbjct: 61  TINEDNSISVEDNGRGMPTGMHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGAS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-V 184
           VVNALS WL++ I R+G IY+ SF + GI  + L+  G             P S IF   
Sbjct: 120 VVNALSEWLEVEIHRDGQIYKQSFKDGGIPTSGLMKAGKTKKTGTKVTF-KPDSSIFKAT 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             FN+DTL  RL+E +FL  +++I+L D R  + RE    Y+ GI+ FVSY++  K+ L 
Sbjct: 179 TSFNFDTLSERLQESAFLLKNLKITLKDLRDGKEREDVYHYEEGIKEFVSYINEGKEVLH 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                  G+ + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    Y 
Sbjct: 239 -DVTTFTGAANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYA 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
            +    K   +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+S V++
Sbjct: 298 RRINELKDKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSE 357

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSER 420
            L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL     +
Sbjct: 358 KLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSK 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           + +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+A+ + +  ++EI T+I  
Sbjct: 418 NTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIFKNEEINTIIHT 477

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G D F +    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  PP
Sbjct: 478 IGAGVGND-FKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQAGRVFIALPP 536

Query: 541 LYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY +     + K ++Y   ++ LE           I       G ++   L  
Sbjct: 537 LYKLEKGKGKSKKVEYAWTDDELEKLQKQLGKGF-ILQRYKGLGEMNPEQLWE 588



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 9/275 (3%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
                    + K  +    + +  +    +   +     ++  ++  L        SKN 
Sbjct: 360 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 418

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643
                ++   ++           +    QA++     V N E  +  ++    ++   ++
Sbjct: 419 --TEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIFKNEEINTIIH 476

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
            I       +    +N + ++           +      F F      + + R+      
Sbjct: 477 TIGAGVGNDFKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQAGRVFIALPP 536

Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
           +  L        K++       L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR
Sbjct: 537 LYKLEKGKGKSKKVEYAWTDDELEKLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 596

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV+I D  ++    + LMGD+V PRRE+I+ +
Sbjct: 597 TLIRVQIDDEVRSSKRVTTLMGDKVAPRREWIENH 631


>gi|297200945|ref|ZP_06918342.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083]
 gi|297147775|gb|EDY60918.2| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083]
          Length = 690

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 287/650 (44%), Positives = 400/650 (61%), Gaps = 24/650 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S+    +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+A
Sbjct: 29  SNGEVTASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHA 87

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLH
Sbjct: 88  DTIDVTILADGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 147

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+ + + IK +G  +   +  G+   PL     A ++ GT VTF    DI
Sbjct: 148 GVGVSVVNALSTKVSVEIKTDGYRWTQDYKLGVPTAPLAQ-HEATDEHGTTVTFWADPDI 206

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFY 225
           F   +++++TL  R +E++FLN  ++I+L D+R                  E + ++  Y
Sbjct: 207 FETTEYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKHEVKTVSYHY 266

Query: 226 KGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282
           +GGI  FV Y   R  + +  + I ++    +  +S++LAM+WN GY E V  F N I  
Sbjct: 267 EGGIVDFVKYLNSRKGEVVHPTVIDLEAEDKDKSLSLELAMQWNGGYSEGVYSFANIIHT 326

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  Q
Sbjct: 327 HEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQ 386

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++EV++ V+  V + L+ WL+ +P+EA  I++K + A+  R AAR+ARDLTRRK
Sbjct: 387 TKTKLGNTEVKTFVQKVVYEHLTDWLDRNPVEAADIIRKSIQAATARVAARKARDLTRRK 446

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+
Sbjct: 447 GLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEK 506

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF F
Sbjct: 507 ARIDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHISTLLLTFLF 565

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           R M  L+  G +Y+ +PPLY I  G+        +   D LI         +  DS    
Sbjct: 566 RFMRPLVEAGHVYLSRPPLYKIKWGRDDIEYAYSDRERDALIEMGRQRGKRIREDSIQRF 625

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
               L     + L++  + ++       T  + A    +F+    +++  
Sbjct: 626 KG--LGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEA 673



 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR-KGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR +G      S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 604 DALIEMGRQRGKRIREDSIQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLF 663

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR+FIQ N+     LDI
Sbjct: 664 SVLMGEDVEARRQFIQRNAKDVRFLDI 690


>gi|323357952|ref|YP_004224348.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Microbacterium testaceum StLB037]
 gi|323274323|dbj|BAJ74468.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Microbacterium testaceum StLB037]
          Length = 677

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 275/633 (43%), Positives = 390/633 (61%), Gaps = 23/633 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y AD+IQ+L+GL+AV+KRP MYIG T GE GLHH++ E++DN++DE+L GY D I VT
Sbjct: 22  NEYGADAIQVLEGLEAVRKRPGMYIGST-GERGLHHLVQEIVDNSVDEALAGYCDTIDVT 80

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DG+  V DNGRGIP D+H+ EG S  EV++T LHAGGKF    Y VSGGLHGVG SV
Sbjct: 81  ILSDGAVRVVDNGRGIPVDMHRTEGKSTVEVVLTVLHAGGKFGGGGYAVSGGLHGVGSSV 140

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L++ +KR+G+++  SF + G    PL   G   + TGT +TF P + IF   D
Sbjct: 141 VNALSTRLEVEVKRQGHVWRQSFRDGGQPLAPLEK-GEESDQTGTTITFWPDATIFDTID 199

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFV 233
           F+YDTL+ R ++++FLN  ++ISL D+R               E R  +  Y+ G+  +V
Sbjct: 200 FDYDTLRTRFQQMAFLNKGLRISLRDERPQSVVVEGEPGEEVTEARNDSFLYERGLVDYV 259

Query: 234 SYLDRHKKPLMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +L+R +K  + +   I+        +I+++LAM+W   Y ENV  + N I   +GGTH 
Sbjct: 260 EHLNRVRKADVVNDEIIEVESEDTDRHIALELAMQWTTAYTENVFTYANTINTHEGGTHE 319

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALT  +  Y   +   K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL +
Sbjct: 320 EGFRAALTTLVNRYARANNLLKEKDDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGN 379

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +E R+ V+  V D L  W + +P +AK I++K +DA+  R AAR+AR+  RRK V + A+
Sbjct: 380 TEARAFVQKVVGDKLGDWFDRNPGQAKNIIRKAIDAATARLAARKARETARRKSVFESAA 439

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           +P KL DC+ +DP  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR D+ L
Sbjct: 440 MPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDRAL 499

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            ++E+  +I A GTGIG+D FD+ K RYHKI++M DADVDG HI TLLLT  FR M  LI
Sbjct: 500 GNKEVQAMIQAFGTGIGED-FDMAKARYHKIVLMADADVDGQHITTLLLTLLFRYMRGLI 558

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             GF+Y+ +PPLY +            +   D ++    +    +  D+   I +     
Sbjct: 559 EAGFVYLAQPPLYRLKWSNHPHEYAYSDRERDAMLVDGQAAGRRIPKDNG--IQRYKGLG 616

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
            ++D    +  +        +  I+ A  +   
Sbjct: 617 EMNDHELWETTMDPETRTLKQVTIDDAAAADEI 649



 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LWETT++P+TR+L +V I DA+ AD++FS LMG++VE RR FIQ N
Sbjct: 609 IQRYKGLGEMNDHELWETTMDPETRTLKQVTIDDAAAADEIFSVLMGEDVESRRSFIQRN 668

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 669 AKDVRFLDI 677


>gi|256786618|ref|ZP_05525049.1| DNA gyrase subunit B [Streptomyces lividans TK24]
 gi|289770511|ref|ZP_06529889.1| DNA gyrase, B subunit [Streptomyces lividans TK24]
 gi|289700710|gb|EFD68139.1| DNA gyrase, B subunit [Streptomyces lividans TK24]
          Length = 694

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 284/649 (43%), Positives = 400/649 (61%), Gaps = 24/649 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            ++SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I 
Sbjct: 37  ASASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADTID 95

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGV
Sbjct: 96  VTILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGV 155

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ + + +K +G  +   +  G+    L     A  +TGT VTF    DIF   
Sbjct: 156 SVVNALSTRVAVEVKTDGYRWTQEYKLGVPTASLAR-HEATEETGTTVTFWADGDIFETT 214

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGI 229
           D++++TL  R +E++FLN  ++I+L D+R                  E + ++  Y+GGI
Sbjct: 215 DYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGI 274

Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
             FV+Y   R  + +  + I ++    +  +S+++AM+WN GY E V  F N I   +GG
Sbjct: 275 VDFVTYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQWNGGYTEGVYSFANIIHTHEGG 334

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  QTK K
Sbjct: 335 THEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTK 394

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRKG+L+
Sbjct: 395 LGNTEVKTFVQKVVYEHLTDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRKGLLE 454

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D
Sbjct: 455 SASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARID 514

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L +QEI  +I+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M 
Sbjct: 515 RILQNQEIQAMISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMR 573

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            L+ +G +Y+ +PPLY I  G+        +   D LI         +  DS        
Sbjct: 574 PLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFKG-- 631

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
           L     + L+I  + ++       T  + A    +F+    +++    A
Sbjct: 632 LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 680



 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR   K I   S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 608 DALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 667

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 668 SVLMGEDVEARRAFIQRNAKDVRFLDI 694


>gi|7437457|pir||T10969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B -
           Streptomyces coelicolor
 gi|436027|gb|AAA65215.1| DNA gyrase [Streptomyces coelicolor A3(2)]
 gi|1093584|prf||2104262D DNA gyrase
          Length = 686

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 284/649 (43%), Positives = 400/649 (61%), Gaps = 24/649 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            ++SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I 
Sbjct: 29  ASASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADTID 87

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGV
Sbjct: 88  VTILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGV 147

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ + + +K +G  +   +  G+    L     A  +TGT VTF    DIF   
Sbjct: 148 SVVNALSTRVAVEVKTDGYRWTQEYKLGVPTASLAR-HEATEETGTTVTFWADGDIFETT 206

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGI 229
           D++++TL  R +E++FLN  ++I+L D+R                  E + ++  Y+GGI
Sbjct: 207 DYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGI 266

Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
             FV+Y   R  + +  + I ++    +  +S+++AM+WN GY E V  F N I   +GG
Sbjct: 267 VDFVTYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQWNGGYTEGVYSFANIIHTHEGG 326

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  QTK K
Sbjct: 327 THEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTK 386

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRKG+L+
Sbjct: 387 LGNTEVKTFVQKVVYEHLTDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRKGLLE 446

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D
Sbjct: 447 SASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARID 506

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L +QEI  +I+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M 
Sbjct: 507 RILQNQEIQAMISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMR 565

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            L+ +G +Y+ +PPLY I  G+        +   D LI         +  DS        
Sbjct: 566 PLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFKG-- 623

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
           L     + L+I  + ++       T  + A    +F+    +++    A
Sbjct: 624 LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 672



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR   K I   S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 600 DALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 659

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 660 SVLMGEDVEARRAFIQRNAKDVRFLDI 686


>gi|191638405|ref|YP_001987571.1| DNA topoisomerase IV subunit B [Lactobacillus casei BL23]
 gi|190712707|emb|CAQ66713.1| Topoisomerase IV, subunit B [Lactobacillus casei BL23]
 gi|327382434|gb|AEA53910.1| DNA topoisomerase IV subunit B [Lactobacillus casei LC2W]
 gi|327385633|gb|AEA57107.1| DNA topoisomerase IV subunit B [Lactobacillus casei BD-II]
          Length = 670

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 368/598 (61%), Gaps = 15/598 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +    +Y+  SIQ+L GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+ D 
Sbjct: 2   DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNSVDEALAGFGDE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV D+GRG+PT +H   G    EVI+T LHAGGKFNQ SYK SGGLHGV
Sbjct: 61  INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS  L +R+ R+   +E  FIN G  D  L   G      GT +TF P   IF
Sbjct: 120 GSSVVNALSESLTVRVVRDKRAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+YDTL  RLRE +FL  ++ I+L D+R+ +    +  Y  G+ +FV YL+  K  
Sbjct: 180 QTTVFSYDTLAERLRESAFLLKNITINLTDERTGK--HDSYHYPDGLVSFVKYLNEGKDA 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +   I  +G +D I +D A ++NDGY EN++ F NN+   DGGTH  GLRS +TR    
Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           +  K    K+  +++ G D REGF  +LS+++P+   +F  QTK KL + + R+VV+  V
Sbjct: 297 FARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
            D LS +L E+  E++ +V+K + A   R+AAR+ARD   T RK   D   L GKL    
Sbjct: 357 YDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   ++ ++EI T+I
Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G D FD+ +  Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 477 YTIGAGVGAD-FDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRIYIAL 535

Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PPLY + +       + Y   +E L            +  F     + +       ++
Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734
            + +F  +Y R  I + RI      +  L    G K KI+       L     ++G KG 
Sbjct: 513 LLLTFFYRYMRPLIDAGRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   + LMGD VEPRRE+I+ 
Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631

Query: 795 N 795
           N
Sbjct: 632 N 632


>gi|313765016|gb|EFS36380.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA1]
 gi|313815427|gb|EFS53141.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA1]
 gi|313828992|gb|EFS66706.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA2]
 gi|314916223|gb|EFS80054.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA4]
 gi|314917490|gb|EFS81321.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA1]
 gi|314921826|gb|EFS85657.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA3]
 gi|314930909|gb|EFS94740.1| DNA gyrase, B subunit [Propionibacterium acnes HL067PA1]
 gi|314955295|gb|EFS99700.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA1]
 gi|314959168|gb|EFT03270.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA1]
 gi|314969073|gb|EFT13171.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA1]
 gi|315099333|gb|EFT71309.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA2]
 gi|315102327|gb|EFT74303.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA1]
 gi|315109856|gb|EFT81832.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA2]
 gi|327454261|gb|EGF00916.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA3]
 gi|328756019|gb|EGF69635.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA1]
 gi|328758863|gb|EGF72479.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA2]
          Length = 685

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 270/578 (46%), Positives = 364/578 (62%), Gaps = 13/578 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L
Sbjct: 37  SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 95

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGVG SVV
Sbjct: 96  LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 155

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186
           NAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +IF    
Sbjct: 156 NALAAHFIVEVRRDGYHWLQSFSLGEPDGPLEQFEALGPDDHEGTTVRFQPSDEIFDAIV 215

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240
           F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +L   +
Sbjct: 216 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 275

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R+ALT 
Sbjct: 276 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 335

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +S V+ 
Sbjct: 336 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 395

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417
            +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPGKL DC
Sbjct: 396 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 455

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S   P++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+ I ++
Sbjct: 456 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 515

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G +Y+ 
Sbjct: 516 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 574

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 575 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 677 AKDVRFLDI 685


>gi|6939900|dbj|BAA90679.1| DNA gyrase subunit B [Porphyromonas asaccharolytica]
          Length = 553

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 268/547 (48%), Positives = 357/547 (65%), Gaps = 10/547 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           GD   E GLHH++YEV+DN+IDE+L GY   + V +  D S  V+DNGRGIP D+H +EG
Sbjct: 1   GDIS-EKGLHHLVYEVVDNSIDEALAGYCTEVLVEILSDNSIQVTDNGRGIPVDMHAKEG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SA EV+MT LHAGGKF++ SYKVSGGLHGVGVS VNALS  L   + R+G IY   +  
Sbjct: 60  KSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSESLIAEVHRDGKIYRQEYSR 119

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G     + V G A +DTGT +TF P   IF    ++ +TL HRLRELS+LN+ + + LID
Sbjct: 120 GKPLTGVEVVGKA-DDTGTRITFKPDDTIFRETIYSSETLSHRLRELSYLNAGLHLKLID 178

Query: 213 KRSPE----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            R  +    P+    + + G+  FV Y+D  K+ L+   I     +  + +++A+ +N  
Sbjct: 179 HRVHDEEGQPKSWIFYSENGLSEFVRYVDGAKESLIHDVIHHTTEKQGVPVEVALTYNTS 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y ENV  + N+I   +GGTHL+G R  LTR +  Y   S    K K  + GDD REG T+
Sbjct: 239 YQENVYTYVNDIHTIEGGTHLTGFRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++S+K+ +P+F  QTK KL +SE+  VV++ V++ L  +LEEHP EAK+IV KV+ A+  
Sbjct: 299 IVSVKVAEPQFEGQTKTKLGNSEIVGVVDAAVSEALEIYLEEHPTEAKLIVDKVILAAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRAR+L +RK  L    LPGKLADCS +DP + ELF+VEGDSAGG+AKQGR  + Q
Sbjct: 359 RHAARRARELVQRKSPLTGGGLPGKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMT 504
           AILPLRGKILNVE+A   ++L + EI  + TALG  +G +        +KLRYHKIIIMT
Sbjct: 419 AILPLRGKILNVEKAMQHRILDNAEIKNIYTALGVTVGTEEDSKALNLSKLRYHKIIIMT 478

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DADVDGAHI TL+LTFFFR M  LI NG++YI  PPLY   + +  +Y   +E   D++ 
Sbjct: 479 DADVDGAHIATLILTFFFRNMRPLIENGYVYIANPPLYLCKKDRIEEYCWTDEQKSDFVT 538

Query: 565 NQSLSEE 571
                +E
Sbjct: 539 KYGNGQE 545


>gi|148271184|ref|YP_001220745.1| DNA gyrase subunit B [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829114|emb|CAN00011.1| DNA gyrase subunit B [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 681

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 260/585 (44%), Positives = 378/585 (64%), Gaps = 10/585 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +    ++ Y A+ IQ+L+GL+AV+KRP MYIG T G  GLHH++ E++DN++DE+L G+A
Sbjct: 31  TRQQVSNDYGANEIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVSEIVDNSVDEALAGFA 89

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I +T+  DG   V D+GRGIP D+H  EGIS  E+++T+LHAGGKF    Y VSGGLH
Sbjct: 90  SDIQITMRKDGGIRVVDDGRGIPVDIHPVEGISTVELVLTKLHAGGKFGGGGYAVSGGLH 149

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L + ++R+G ++  SF  G+ D PL   G    +TGT +TF PS +I
Sbjct: 150 GVGSSVVNALSERLDVEVRRQGAVWRQSFTIGVPDEPLQK-GEGSTETGTTITFWPSREI 208

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---EPREITMFYKGGIEAFVSY--L 236
           F   +F+YDTL+ R ++++FLN  + ++L D+R     E R     Y+ G+  +V +   
Sbjct: 209 FETVEFDYDTLRARFQQMAFLNKGLALTLHDEREVDGAEHRTEKFLYERGLVDYVEHLVK 268

Query: 237 DRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            +  + +    I  +       IS+++AM+W   Y E+V  + N I   +GGTH  G R+
Sbjct: 269 AKKTEVVNADVIAFESEDTVKKISLEVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRA 328

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALT  +  Y  ++   ++   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E ++
Sbjct: 329 ALTTLVNRYARENKLLREKDENLTGDDVREGLTAVISVKLGEPQFEGQTKTKLGNTEAKA 388

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V   L  WLE++P +AK I++K + AS  R AAR+AR+ TRRKG+L+   +PGKL
Sbjct: 389 YVQRIVGQQLGDWLEKNPSQAKDIIRKGMQASQARLAARKAREQTRRKGLLESGGMPGKL 448

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DC  +DP  SE+FLVEGDSAGGSA QGR+   QAILPLRGKILNVE+AR D+ L + E+
Sbjct: 449 KDCQSKDPALSEVFLVEGDSAGGSAVQGRNPTTQAILPLRGKILNVEKARLDRALQNNEV 508

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            ++ITA G GIG+D F+  K+RYHKI++M DADVDG HI TLLLT  FR M  LI  G++
Sbjct: 509 QSMITAFGAGIGED-FNAEKVRYHKIVLMADADVDGQHITTLLLTLLFRYMRPLIELGYV 567

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           Y+ +PPLY +    +       ++  D L+    ++  ++  D+ 
Sbjct: 568 YLAQPPLYRLKWSNAEHQYVYTDAERDALLVHGQAKGKKMPKDNG 612



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  +LWETT++P TR+L++V + DA+ AD++FS LMG++VE RR FIQ N
Sbjct: 613 IQRYKGLGEMDYKELWETTMDPATRTLMQVTLDDAAGADEVFSTLMGEDVESRRSFIQRN 672

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 673 AKDVRFLDI 681


>gi|227432902|ref|ZP_03914846.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351335|gb|EEJ41617.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 672

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 276/626 (44%), Positives = 396/626 (63%), Gaps = 12/626 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + + +   Y+AD IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+A
Sbjct: 30  TVDAKAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 88

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             ITVT+  D S TV+D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLH
Sbjct: 89  SHITVTIEKDNSITVTDDGRGIPVDIQTKTGKPALETVFTVLHAGGKFGGGGYKVSGGLH 148

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSD 180
           GVG SVVNALS+ L +++ R+  +Y M F  G +   +         + GT V F P +D
Sbjct: 149 GVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIERGTIVHFKPDTD 208

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     +NY TL  R+REL+FLN  ++IS+ DKR  EP + +  ++GGI+ +V YL+  
Sbjct: 209 IFRETTTYNYKTLLTRVRELAFLNKGLRISIADKRLEEPIKESFNFEGGIKEYVQYLNED 268

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ +   P+ ++G  + I ++ A+++     +++  F NNI   +GGTH +G ++ALTR 
Sbjct: 269 KQVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFANNINTYEGGTHETGFKTALTRV 328

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  KS   K    S+ G+D REG T+++SIK PDP+F  QTK KL +S+ R   +  
Sbjct: 329 INDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 388

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++  S ++ E+P  A+ IV+K + A   R AA+RAR++TR++  L+I +LPGKLAD + 
Sbjct: 389 FSETFSRFMMENPNVARQIVEKGVLAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 448

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNV +A  +++L+++EI +L T
Sbjct: 449 NDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKASLERVLANEEIRSLFT 508

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTG G D F++ K  YHK+IIMTDADVDGAHIRTLLLT F+R M  L+  G++YI +P
Sbjct: 509 AMGTGFG-DDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAGYIYIAQP 567

Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALK 596
           PLYG+     KS+ Y+  +E LE YL     + +         G +  + L +   DA  
Sbjct: 568 PLYGVALGNNKSMTYLDSDEELESYLSQLPSNVKPKVQRYKGLGEMDYDQLADTTMDAQN 627

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622
                +           E   +  + 
Sbjct: 628 -----RRLLRVDPADAEEAEAVIDML 648



 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QL +TT++   R LLRV   DA +A+ +   LMG +V PRR+FI++N
Sbjct: 604 VQRYKGLGEMDYDQLADTTMDAQNRRLLRVDPADAEEAEAVIDMLMGGDVPPRRKFIEDN 663

Query: 796 SLPS-ALDI 803
           ++    LDI
Sbjct: 664 AVFVENLDI 672


>gi|32448552|gb|AAO16803.1| ParE [Streptococcus pneumoniae]
          Length = 638

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 272/614 (44%), Positives = 386/614 (62%), Gaps = 18/614 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+ D I VT+
Sbjct: 1   NYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 59

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SVV
Sbjct: 60  NKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 118

Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD 186
           N  SSWL++ I R+G IY+  F N G     L   G+A    TGT+VTF+P + IFS  D
Sbjct: 119 NLSSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDAGIFSTTD 178

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F Y+T+  RL E +FL  +V +SL DKR+ E   +   Y+ G++ FVSYL+  K+ L   
Sbjct: 179 FKYNTISERLNESAFLLKNVTLSLTDKRTDES--VEFHYENGVQDFVSYLNEDKETLTPV 236

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
               +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T+ +  Y  K
Sbjct: 237 L-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARK 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R VV+  V D L
Sbjct: 296 TGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKL 355

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERDP 422
           + +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GKL     ++P
Sbjct: 356 TFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNP 415

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++EI T+I  +G
Sbjct: 416 AKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIG 475

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPLY
Sbjct: 476 AGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEVGHVYIALPPLY 534

Query: 543 GIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK-- 596
            ++    + + + Y   +  LE+          ++ +     + +       ++   +  
Sbjct: 535 KMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTL 594

Query: 597 IDKLIKDFYPNHDK 610
           I   I+D      +
Sbjct: 595 IRVTIEDLARAERR 608



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 58/73 (79%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMG
Sbjct: 555 LEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMG 614

Query: 783 DEVEPRREFIQEN 795
           D+VEPRR++I++N
Sbjct: 615 DKVEPRRKWIEDN 627


>gi|88854504|ref|ZP_01129171.1| DNA topoisomerase IV subunit B [marine actinobacterium PHSC20C1]
 gi|88816312|gb|EAR26167.1| DNA topoisomerase IV subunit B [marine actinobacterium PHSC20C1]
          Length = 664

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/579 (45%), Positives = 377/579 (65%), Gaps = 7/579 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   SY AD IQIL+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY D I
Sbjct: 20  VAADSYGADQIQILEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCDTI 78

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +  DGS  V DNGRGIP DL+++E  S  EV+MT LHAGGKF    Y VSGGLHGVG
Sbjct: 79  NVWIRKDGSVRVRDNGRGIPVDLNQQEQKSTVEVVMTMLHAGGKFGGGGYAVSGGLHGVG 138

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS+ +   ++R+G+++ MSF NG+   PL   G +  +TGT+ TF PS + F  
Sbjct: 139 ISVVNALSAEIDTEVRRQGHVWRMSFANGVPVGPLEQ-GESTTETGTQQTFWPSKETFET 197

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--LDRHKKP 242
            +F+++TL+ R ++++FLN  ++I++ D+R  E    +  Y+ G+  +V Y    +  + 
Sbjct: 198 VEFDFETLRARFQQMAFLNKGLRITITDERDEEDVVESYMYERGLVDYVEYLNKAKKNEL 257

Query: 243 LMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +    I  +       IS+++AM+W  GY E+V  + N I   +GGTH  G R+ALT  +
Sbjct: 258 IHPDVIAFESEDTEKRISLEVAMQWTAGYTESVHTYANTINTHEGGTHEEGFRAALTSLV 317

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+   
Sbjct: 318 NRYAREKNIIKEKDENLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQRIA 377

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              L  W + +P +A+ +++K + AS  R AAR+AR+ TRRKG+L+ + +PGKL DCS +
Sbjct: 378 GQQLGDWFDRNPTQARDVIRKAIQASQARLAARKAREQTRRKGLLESSGMPGKLRDCSSK 437

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L + E+  +ITA
Sbjct: 438 DPSLSEIFIVEGDSAGGSAVQGRNPEFQAILPLRGKILNVEKARLDRALGNAEVQAMITA 497

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            G G+G+D FD  K RYHKI++M DADVDG HI TLLLT  FR M  LI  G++Y+ +PP
Sbjct: 498 FGAGVGED-FDPEKARYHKIVLMADADVDGQHITTLLLTLLFRYMRPLIDLGYVYLAQPP 556

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           LY +    +       ++  D L    LS    +  D+ 
Sbjct: 557 LYRLKWSNAQHEYVYSDTERDALTEAGLSAGKRMPKDNG 595



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  +LWETT++P  R+LL+V + DA+ AD++FS LMG++VE RR FIQ N
Sbjct: 596 IQRYKGLGEMDYKELWETTMDPADRTLLQVTLDDAAAADEIFSTLMGEDVESRRNFIQRN 655

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 656 AKDVRFLDI 664


>gi|227535108|ref|ZP_03965157.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187249|gb|EEI67316.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 670

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 368/598 (61%), Gaps = 15/598 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +    +Y+  SIQ+L GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+ D 
Sbjct: 2   DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNSVDEALAGFGDE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV D+GRG+PT +H   G    EVI+T LHAGGKFNQ SYK SGGLHGV
Sbjct: 61  INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS  L +R+ R+   +E  FIN G  D  L   G      GT +TF P   IF
Sbjct: 120 GSSVVNALSESLTVRVVRDKRAFEEHFINGGHPDGTLQKLGKVNEPNGTTITFKPDPTIF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+YDTL  RLRE +FL  ++ I+L D+R+ +    +  Y  G+ +FV YL+  K  
Sbjct: 180 QTTVFSYDTLAERLRESAFLLKNITINLTDERTGK--HDSYHYPDGLVSFVKYLNEGKDA 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +   I  +G +D I +D A ++NDGY EN++ F NN+   DGGTH  GLRS +TR    
Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           +  K    K+  +++ G D REGF  +LS+++P+   +F  QTK KL + + R+VV+  V
Sbjct: 297 FARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
            D LS +L E+  E++ +V+K + A   R+AAR+ARD   T RK   D   L GKL    
Sbjct: 357 YDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   ++ ++EI T+I
Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G D FD+ +  Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 477 YTIGAGVGAD-FDMQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRIYIAL 535

Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PPLY + +       + Y   +E L            +  F     + +       ++
Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734
            + +F  +Y R  I + RI      +  L    G K KI+       L     ++G KG 
Sbjct: 513 LLLTFFYRYMRPLIDAGRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   + LMGD VEPRRE+I+ 
Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631

Query: 795 N 795
           N
Sbjct: 632 N 632


>gi|21222282|ref|NP_628061.1| DNA gyrase subunit B [Streptomyces coelicolor A3(2)]
 gi|544466|sp|P35886|GYRB_STRCO RecName: Full=DNA gyrase subunit B
 gi|8247656|emb|CAB92994.1| DNA gyrase subunit B [Streptomyces coelicolor A3(2)]
          Length = 686

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 284/649 (43%), Positives = 400/649 (61%), Gaps = 24/649 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            ++SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I 
Sbjct: 29  ASASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADTID 87

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGV
Sbjct: 88  VTILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGV 147

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ + + +K +G  +   +  G+    L     A  +TGT VTF    DIF   
Sbjct: 148 SVVNALSTRVAVEVKTDGYRWTQEYKLGVPTASLAR-HEATEETGTTVTFWADGDIFETT 206

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGI 229
           D++++TL  R +E++FLN  ++I+L D+R                  E + ++  Y+GGI
Sbjct: 207 DYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGI 266

Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
             FV+Y   R  + +  + I ++    +  +S+++AM+WN GY E V  F N I   +GG
Sbjct: 267 VDFVTYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQWNGGYTEGVYSFANIIHTHEGG 326

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  QTK K
Sbjct: 327 THEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTK 386

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRKG+L+
Sbjct: 387 LGNTEVKTFVQKVVYEHLTDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRKGLLE 446

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D
Sbjct: 447 SASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARID 506

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L +QEI  +I+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M 
Sbjct: 507 RILQNQEIQAMISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMR 565

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            L+ +G +Y+ +PPLY I  G+        +   D LI         +  DS        
Sbjct: 566 PLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFKG-- 623

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
           L     + L+I  + ++       T  + A    +F+    +++    A
Sbjct: 624 LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 672



 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR   K I   S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 600 DALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 659

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 660 SVLMGEDVEARRAFIQRNAKDVRFLDI 686


>gi|199599527|ref|ZP_03212915.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus HN001]
 gi|229552216|ref|ZP_04440941.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258508414|ref|YP_003171165.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus GG]
 gi|258539627|ref|YP_003174126.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus Lc 705]
 gi|199589568|gb|EDY97686.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus HN001]
 gi|229314402|gb|EEN80375.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257148341|emb|CAR87314.1| DNA topoisomerase IV, B subunit [Lactobacillus rhamnosus GG]
 gi|257151303|emb|CAR90275.1| DNA topoisomerase IV, B subunit [Lactobacillus rhamnosus Lc 705]
 gi|259649728|dbj|BAI41890.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus GG]
          Length = 670

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 266/598 (44%), Positives = 368/598 (61%), Gaps = 15/598 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +    +Y+  SIQ+L GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+ D 
Sbjct: 2   DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGFGDE 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV D+GRG+PT +H   G    EVI+T LHAGGKFNQ SYK SGGLHGV
Sbjct: 61  INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS  L +R+ R+ + +E  FIN G  D  L   G      GT +TF P   +F
Sbjct: 120 GSSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGGLQKLGKVNEPNGTTITFKPDPTVF 179

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNYDTL  RLRE +FL  ++ I+L D+R+ +       Y  G+ +FV YL+  K  
Sbjct: 180 QTTVFNYDTLAERLRESAFLLKAITINLTDERTGK--HDQYHYPDGLVSFVKYLNEGKDA 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +   I  +G +D I +D A ++NDGY EN++ F NN+   DGGTH  GLRS +TR    
Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENIISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           +  K    K   +++ G D REGF  +LS+++P+   +F  QTK KL + + R+VV+  V
Sbjct: 297 FARKVGLLKDRDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
            D L+ +L E+  E++ +V+K + A   R+AAR+ARD   T RK   D   L GKL    
Sbjct: 357 YDHLATFLMENGEESQELVRKAIKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   ++ ++EI T+I
Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G D FDI +  Y+KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 477 YTIGAGVGAD-FDIQQANYNKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRVYIAL 535

Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PPLY + +       + Y   +E L            +  F     + +       ++
Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593



 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 7/121 (5%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734
            + +F  +Y R  I + R+      +  L    G K KI+       L     ++G KG 
Sbjct: 513 LLLTFFYRYMRPLIDAGRVYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   + LMGD VEPRRE+I+ 
Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631

Query: 795 N 795
           +
Sbjct: 632 H 632


>gi|329571648|gb|EGG53329.1| DNA topoisomerase 4 subunit B [Enterococcus faecalis TX1467]
          Length = 542

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 256/539 (47%), Positives = 351/539 (65%), Gaps = 10/539 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+  D S  V+D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+G  Y   F + G     L   G      GT VTFLP  
Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  +F+Y+ L  RLRE +FL   V+I+L D+R  EP+E    Y+ GI+ FV+YL+  
Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G+++ I ++LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+ 
Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +VLSI++P+   +F  QTK KL +   R+VV+
Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V + +  +L+E+   ++ +++K + A   R+AAR+AR+     +K     + L GKL 
Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           T+I  +G G+G   F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G  
Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEYGQS 534


>gi|224500820|ref|ZP_03669169.1| DNA topoisomerase IV subunit B [Listeria monocytogenes Finland
           1988]
          Length = 647

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 260/650 (40%), Positives = 381/650 (58%), Gaps = 18/650 (2%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG 72
           DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I VTL+ DG
Sbjct: 1   DSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKIVVTLHEDG 59

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGVGVSVVNAL 131
           S +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGVG SVVNAL
Sbjct: 60  SVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSSVVNAL 118

Query: 132 SSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           S WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF    FNY+
Sbjct: 119 SEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIFPTTSFNYE 177

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
           TL  RLRE +FL   + I LID+R          ++ G++ FV Y++  K  L       
Sbjct: 178 TLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDVLHPVA-SF 234

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
           +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    Y  +    
Sbjct: 235 EGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFNDYARRVNLL 294

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
           K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V + L+ +L
Sbjct: 295 KEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVVAEHLAYFL 354

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERDPKKSE 426
            E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL     R+P K+E
Sbjct: 355 AENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNE 414

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I  +G G+G
Sbjct: 415 LYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVG 474

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT- 545
              FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  PPLY ++ 
Sbjct: 475 -TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSR 533

Query: 546 ---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-DALKIDKLI 601
              + + ++Y   +E L+  +        I+ +     + +       ++ D   + ++ 
Sbjct: 534 GSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVR 593

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            D     ++              +  ++          N L       E+
Sbjct: 594 VDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDSQNILENENMMVEE 643



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  ++              ++      S  +          ++   +
Sbjct: 359 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 418

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 419 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 478

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
               N D +V           +      F +      + + ++      +  +     K 
Sbjct: 479 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 538

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+
Sbjct: 539 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 597

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 598 ARAERRVATLMGDKVEPRRQWIEKH 622


>gi|294155877|ref|YP_003560261.1| DNA gyrase, B subunit [Mycoplasma crocodyli MP145]
 gi|291599921|gb|ADE19417.1| DNA gyrase, B subunit [Mycoplasma crocodyli MP145]
          Length = 646

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 258/648 (39%), Positives = 391/648 (60%), Gaps = 18/648 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +N++Y+A +I+ L+GL+ V++RP MYIG T  + GLHHMI+E++DN++DE++ G+A+II 
Sbjct: 3   KNNNYEASNIKFLEGLEHVRRRPGMYIG-TTSKDGLHHMIWEIVDNSVDEAMAGFANIIQ 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +T+  D    V DNGRGIP  +H+  GISA EV++T+L+AGGKF   +YKVSGGLHGVG 
Sbjct: 62  ITITDDDRIIVEDNGRGIPVGIHERFGISALEVVLTKLNAGGKFESNAYKVSGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           SVVNALS  +K  +KREG I+   F N G+      V G+  G+ +GT++ F P   I  
Sbjct: 122 SVVNALSDSMKAWVKREGKIHFAEFANGGVTIKSTEVIGTYEGDSSGTKIEFHPDFTIME 181

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+ + +    ++++ LN  + +S+ D R  +       +  GI  +V+ L+    P+
Sbjct: 182 KVPFDKELVVDHAKQIAHLNKGLFVSVKDLR--DNTYEEFKFDNGIIDYVNELNEGYTPI 239

Query: 244 MQSPIRIQGS--------RDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            Q  I  +G+          +I +++A ++ +D    N++ + NNI   +GGTH+SG   
Sbjct: 240 NQEVIFAEGTYLSVHNGNERSIGVEIAAQYLSDFPRSNIISYANNIATHEGGTHVSGFYD 299

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ++ R + +Y  ++   K +      +D  EG T+++S+K PDP+F  QTK KL S + R 
Sbjct: 300 SVMRIVNNYAIENGIIKNEAEKFSREDLTEGLTAIISVKHPDPQFEGQTKGKLGSKDARM 359

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V    ++     L E+P+ +K I++  + A   R AA  ARD  +RK   D   LPGKL
Sbjct: 360 AVNKVFSEVFERLLNENPVLSKKIIENAVYARKGRLAANAARDNAKRKSAFDNGGLPGKL 419

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+ ++ + SEL+LVEG+SAGGSAK GR R  QAILPLRGK+LNVERAR D++++++EI
Sbjct: 420 ADCASKNAEVSELYLVEGNSAGGSAKMGRDRNTQAILPLRGKVLNVERARQDRVVNNEEI 479

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            +L+TALGT +G D+F+INKLRYHKI+IMTDADVDGAHIRTLLLTFF+R    LI  GF+
Sbjct: 480 MSLVTALGTSLG-DTFNINKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYFKPLIEYGFI 538

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDD 593
           YI +PPLY I + K+++Y  ++   ++ +   + +++I        G +    L     D
Sbjct: 539 YIAQPPLYKIQQNKTVEYAYNDAQKDEIITKLNPTQKINIQRYKGLGEMDPEQLWETTMD 598

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                 L       +   +    ++    N E  +E     A  + N 
Sbjct: 599 PKNRKMLQVQIEDAYKADWAFSTLMG--ENVEPRREFIEKNAKYVKNI 644



 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 100/260 (38%), Gaps = 24/260 (9%)

Query: 553 VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD-----FYPN 607
            +D    +    N  L  ++         +S+  L                         
Sbjct: 400 ARDNAKRKSAFDNGGLPGKLADCASKNAEVSELYLVEGNSAGGSAKMGRDRNTQAILPLR 459

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKR 666
                +E+A    V N E    +  +L + L +  N    +  K       +     ++ 
Sbjct: 460 GKVLNVERARQDRVVNNEEIMSLVTALGTSLGDTFNINKLRYHKIVIMTDADVDGAHIRT 519

Query: 667 IARGVQEQF---VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +      ++   ++E   I+       +I  N+  E            + I    P    
Sbjct: 520 LLLTFFYRYFKPLIEYGFIYIAQPPLYKIQQNKTVEYAYNDA---QKDEIITKLNPTQ-- 574

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
                     I++QRYKGLGEM+  QLWETT++P  R +L+V+I DA +AD  FS LMG+
Sbjct: 575 ---------KINIQRYKGLGEMDPEQLWETTMDPKNRKMLQVQIEDAYKADWAFSTLMGE 625

Query: 784 EVEPRREFIQENSLPS-ALD 802
            VEPRREFI++N+     +D
Sbjct: 626 NVEPRREFIEKNAKYVKNID 645


>gi|326692694|ref|ZP_08229699.1| DNA topoisomerase IV subunit B [Leuconostoc argentinum KCTC 3773]
          Length = 693

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 261/680 (38%), Positives = 383/680 (56%), Gaps = 21/680 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    + YD+DSI+IL+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+
Sbjct: 1   MAEK---NHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ + + TV D GRG+P  +H E G    EVI+T LHAGGKF Q  Y  SGGL
Sbjct: 57  GNDIRVTIHENNAITVQDFGRGMPVGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS  L++ I R+G+ ++  F+N G   + L   G     +GT V F P  
Sbjct: 116 HGVGSSVVNALSESLQVTIVRDGHKWQEDFVNGGHPVDTLRDLGPTTEHSGTTVKFKPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +FS   + YDTL  RLRE +FL S V+ +L D+R    R  T  Y+ G+E+FV +L+  
Sbjct: 176 SLFSATVYKYDTLSERLRESAFLMSGVKFTLTDERVQPARVETYHYEKGLESFVGFLNED 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  +   +  +G +  I +++A ++NDGY E +L F NN+  +DGGTH  G R+A T+ 
Sbjct: 236 -KATIGPVMTFEGEQSGIVVEVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K   +++ G D REG  +V+S+++P+   +F  QTK+KL + E R +VE
Sbjct: 295 FNEYARKVNLLKDKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKDKLGTPEARGIVE 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLA 415
           S VN+ L  +L E+    + +++K + A   R+AAR+A     T +        L GKLA
Sbjct: 355 SIVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKSKGQKERLLSGKLA 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +D  ++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI 
Sbjct: 415 PAQSKDATRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLVDILKNEEIS 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLI A+G G+G D F ++   + KIIIMTDAD DGAHI+TLLLTFF++ M  LI  G +Y
Sbjct: 475 TLIYAIGGGVGND-FKVSDTAFDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVY 533

Query: 536 IIKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY +    +  + ++    + LE          E+  F           +   + 
Sbjct: 534 IALPPLYRVKYASKKMADKFAWTNDELEAITSQSDARYELTRFKGLGE------MNAPLL 587

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               ++   +          +           +  +     + + +   L+      +  
Sbjct: 588 WETTMNPETRTLIRVKIDDAVLAEKRVTTLMGDKVEPRRDWIEANVHFTLDEAGSILDTV 647

Query: 653 WHGSINNSDILVKRIARGVQ 672
                N SD+  K      +
Sbjct: 648 DGDPTNASDVFEKARQHENK 667



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/73 (54%), Positives = 53/73 (72%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L+ I S       + R+KGLGEMNA  LWETT+NP+TR+L+RVKI DA  A+   + LMG
Sbjct: 560 LEAITSQSDARYELTRFKGLGEMNAPLLWETTMNPETRTLIRVKIDDAVLAEKRVTTLMG 619

Query: 783 DEVEPRREFIQEN 795
           D+VEPRR++I+ N
Sbjct: 620 DKVEPRRDWIEAN 632


>gi|328883698|emb|CCA56937.1| DNA gyrase subunit B [Streptomyces venezuelae ATCC 10712]
          Length = 676

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 285/664 (42%), Positives = 394/664 (59%), Gaps = 24/664 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +N+ Y A +IQ+L+GLDAV+KRP MYIG T GE GLHHM+ EV+DN++DE+L G+AD
Sbjct: 14  NPNENNQYTASNIQVLEGLDAVRKRPGMYIGST-GERGLHHMVQEVVDNSVDEALAGHAD 72

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG+  V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHG
Sbjct: 73  TIDVTILADGAVRVVDNGRGIPVGIVASEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHG 132

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ + + IK +G+ +   +  G    PL       ++TGT VTF    DIF
Sbjct: 133 VGVSVVNALSTKVSVEIKTDGHRWTQDYKMGAPTAPLAQHEKT-DETGTSVTFWADPDIF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------PEPREITMF 224
              +++++TL  R +E++FLN  + I+L D+R                   P  R +   
Sbjct: 192 ETTEYSFETLSRRFQEMAFLNKGLTITLTDERESAKATVGADDPDAEAAAEPAARTVKYH 251

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I ++    +  +S+++AM+WN GY E V  F N I 
Sbjct: 252 YEGGIVDFVKYLNSRKGELVHPTVIDLEAEDKDKALSLEVAMQWNSGYSEGVYSFANIIH 311

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 312 THEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEG 371

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV++ V+  V + L+ WL+ +P+EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 372 QTKTKLGNTEVKTFVQRAVYEHLNDWLDRNPVEAADIIRKSIQAATARVAARKARDLTRR 431

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE
Sbjct: 432 KGLLESASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVE 491

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF 
Sbjct: 492 KARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFL 550

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           FR M  L+  G +++ +PPLY I  G+        +   D L+         +  DS   
Sbjct: 551 FRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQSGKRIKEDSIQR 610

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                  N  +  +    +              QA          D E   S   + A  
Sbjct: 611 FKGLGEMNAEELRVTTMDVEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKD 670

Query: 642 LNFI 645
           + F+
Sbjct: 671 VRFL 674



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +G+      K  S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 590 DALVELGKQSGKRIKEDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDDAAQADDLF 649

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 650 SVLMGEDVEARRSFIQRNAKDVRFLDI 676


>gi|327456322|gb|EGF02977.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA2]
          Length = 685

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/578 (46%), Positives = 363/578 (62%), Gaps = 13/578 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA  I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L
Sbjct: 37  SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 95

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D  C V+DNGRGIP   H  E I    +++T+LHAGGKF    YKVSGGLHGVG SVV
Sbjct: 96  LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 155

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186
           NAL++   + ++R+G  +  SF  G  D PL    +    +  GT V F PS +IF    
Sbjct: 156 NALAAHFIVEVRRDGYHWLQSFSLGEPDGPLEQFEALGPDDHEGTTVRFQPSDEIFDAIV 215

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240
           F+Y TL +R RE++FLN  ++I L D+R+        P      YK G++ +V +L   +
Sbjct: 216 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 275

Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +  + I ++  R    + +++AM+WN  Y  +V  F N I   +GG H  G R+ALT 
Sbjct: 276 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 335

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E     KK +  V GDD REG T+V+SIK+ +P+F  QTK KL ++E +S V+ 
Sbjct: 336 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 395

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417
            +N+ LS W EE+P E K IV+K   A+  R AAR+ARD    RKG+L   SLPGKL DC
Sbjct: 396 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 455

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S    ++ E+F+VEGDSAGGSA QGR    QAILPLRGKILNVE+AR D+ L S+ I ++
Sbjct: 456 SSTSSEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 515

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT  FR M  +I  G +Y+ 
Sbjct: 516 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 574

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           +PPL+ +    S   +   +   D L    L+   +L 
Sbjct: 575 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A  LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N
Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 677 AKDVRFLDI 685


>gi|239980782|ref|ZP_04703306.1| DNA gyrase subunit B [Streptomyces albus J1074]
 gi|291452640|ref|ZP_06592030.1| DNA topoisomerase subunit B [Streptomyces albus J1074]
 gi|291355589|gb|EFE82491.1| DNA topoisomerase subunit B [Streptomyces albus J1074]
          Length = 701

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 288/645 (44%), Positives = 393/645 (60%), Gaps = 26/645 (4%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA +I +L+GLDAV+KRP MYIG T GE GLHHM+ EV+DN++DE+L G+AD I VT+
Sbjct: 45  SYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHMVQEVVDNSVDEALAGHADFIDVTI 103

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGVSVV
Sbjct: 104 LADGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVV 163

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ + + I+ +G+ +  S+  G+   PL   G A  +TGT VTF   S IF   D++
Sbjct: 164 NALSTRVAVEIRTDGHHWSQSYERGVPTAPLAQ-GEATEETGTSVTFWADSSIFETTDYS 222

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR------------------SPEPREITMFYKGGIE 230
           ++TL  R +E++FLN  + I L D+R                    EPR +T  Y+GGI 
Sbjct: 223 FETLSRRFQEMAFLNKGLTIKLTDERASAKATAGADSDEATAGEPEEPRTVTYHYEGGIV 282

Query: 231 AFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            FV+Y   R  + +  + I I+    +  +S+++AM+WN GY E V  F N I   +GGT
Sbjct: 283 DFVTYLNSRKGEVIHPTVIDIEAEDKDRLLSVEVAMQWNGGYSEGVYSFANTIHTHEGGT 342

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R ALT  +  Y       +    ++ GDD REG T+++S+K+ +P+F  QTK KL
Sbjct: 343 HEEGFRGALTTLVNKYARDRKLLRDKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKL 402

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E ++ V+  V + L+ W + +P EA  I++K + A+  R AAR+ARDLTRRKG+L+ 
Sbjct: 403 GNTEAKTFVQKVVYEHLADWFDRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLET 462

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR    QAILP+RGKILNVE+AR DK
Sbjct: 463 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILNVEKARIDK 522

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L +QEI  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  
Sbjct: 523 ILHNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 581

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+  G +++ +PPLY I   +        +   D LI     +   +  DS        L
Sbjct: 582 LVEAGHVFLSRPPLYKIKWTRDDFQYAYSDRERDALIALGREQGKRIRDDSVQRFKG--L 639

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                + L+I  + ++       T  + A    +F+    +++  
Sbjct: 640 GEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEA 684



 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D + ++GR      +  S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 615 DALIALGREQGKRIRDDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 674

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR+FIQ N+     LDI
Sbjct: 675 SVLMGEDVEARRQFIQRNAKDVRFLDI 701


>gi|296178610|dbj|BAJ07688.1| DNA gyrase B [Kosmotoga arenicorallina]
          Length = 538

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 260/530 (49%), Positives = 355/530 (66%), Gaps = 4/530 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G++GLHH++YEV+DN+IDE + G+ D I VT+  DG+  V DNGRGIP D+H + G SA 
Sbjct: 2   GKAGLHHLVYEVVDNSIDEVVAGFCDQIEVTIFEDGTVRVMDNGRGIPVDVHPDTGTSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EV+MT LHAGGKF++ SYK+SGGLHGVGVSVVNALS WL++++ REG IY   +  GI  
Sbjct: 62  EVVMTTLHAGGKFSKDSYKISGGLHGVGVSVVNALSEWLEVKVHREGEIYRQRYERGIPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+ + G   +  GTE  F P   +F+  DF++D L+ RLREL+FLN SV+I   DKR  
Sbjct: 122 TPVEIIGKT-DKRGTETWFKPDKLVFTTTDFDFDILESRLRELAFLNPSVRIIFEDKRIN 180

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E R      +GGI  FV +++R K  + + P  I+G+ ++I + LA+++   + E++L F
Sbjct: 181 EKRAFHF--EGGISEFVKFMNRKKTAINKEPYYIEGTFNDIKVQLALQYTTSFEEHILTF 238

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI   +GGTHL+G ++ LT+ I  Y +K    K+   ++ G+D REG T+VLSI + +
Sbjct: 239 VNNIKTVEGGTHLTGFKTILTKLINDYAKKFNIIKEKDPNLQGEDVREGLTAVLSIFIKE 298

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL + E    V   + D L    E +  E K I+ K +DA+  R AA++AR
Sbjct: 299 PQFEGQTKAKLGNEEGYEAVIKVLRDKLPEVFEYNQKEVKAIISKAVDAAKARLAAKKAR 358

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++ RRK  L+  +LPGKLADC  +D   +ELF+VEGDSAGGSAKQ R RE QAILPLRGK
Sbjct: 359 EMVRRKNALENTTLPGKLADCISQDLDNTELFIVEGDSAGGSAKQARDREFQAILPLRGK 418

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+A F+K+L +++I  +I A+GTGIG D  ++ KLRY KIIIMTDADVDGAHIRTL
Sbjct: 419 ILNVEKASFEKLLKNEQINNIIVAVGTGIGDDL-NLEKLRYGKIIIMTDADVDGAHIRTL 477

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           +LT  +R M  LI  G +YI + PLY +   +   Y   +E LE +    
Sbjct: 478 ILTLLYRYMTPLISTGRVYIAQAPLYKVELNRKKYYFFSDEELEAFSKEN 527


>gi|296111945|ref|YP_003622327.1| DNA topoisomerase IV subunit B [Leuconostoc kimchii IMSNU 11154]
 gi|295833477|gb|ADG41358.1| DNA topoisomerase IV subunit B [Leuconostoc kimchii IMSNU 11154]
          Length = 685

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 265/677 (39%), Positives = 381/677 (56%), Gaps = 21/677 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    + YD+DSI+IL+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+
Sbjct: 1   MAEK---NHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ + S TV D GRG+P  LH E G    EVI+T LHAGGKF Q  Y  SGGL
Sbjct: 57  GNDIRVTIHSNNSITVQDFGRGMPVGLH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS  L++ I R+G+ ++  F N G     L   G     +GT VTF P  
Sbjct: 116 HGVGSSVVNALSESLQVTIVRDGHKWQEDFTNGGQPVGTLRDLGVTKEKSGTTVTFKPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + YDTL  RLRE +FL S V+ SL D+R    R  T  Y+ G+EAFV +L+  
Sbjct: 176 TIFSAVVYKYDTLSERLRESAFLMSGVKFSLTDERVKPARVETYHYEKGLEAFVGFLNED 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +  +G +  I +D+A ++NDGY E +L F NN+  +DGGTH  G R+A T+ 
Sbjct: 236 KGTIGP-VMTFEGEQSGIVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +V+S+++P+   +F  QTK+KL + E R +V+
Sbjct: 295 FNEYARKVNLLKEKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKDKLGTPEARGIVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLA 415
           S VN+ L  +L E+    + +++K + A   R+AAR+A     T +        L GKLA
Sbjct: 355 SVVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKAKGQKERLLSGKLA 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ +++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI 
Sbjct: 415 PAQSKNAERNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLVDILKNEEIS 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLI A+G G+G D F +    ++KIIIMTDAD DGAHI+TLLLTFF++ M  LI  G +Y
Sbjct: 475 TLIYAIGGGVGND-FKVADTAFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVY 533

Query: 536 IIKPPLYGITRGKS---LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY +         ++    + LE          E+  F           +   + 
Sbjct: 534 IALPPLYRVKYASKKFDDKFAWTNDELETITSQNEARYELTRFKGLGE------MNAPLL 587

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               ++   +          +           +  +     + + +   L+      +  
Sbjct: 588 WETTMNPETRTLIRVKIDDAVLAEKRVTTLMGDKVEPRREWIEANVHFTLDEAGSILDTV 647

Query: 653 WHGSINNSDILVKRIAR 669
                 +SD+  K    
Sbjct: 648 DGDDTKSSDVFEKARQH 664



 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC----SLLDTIFSIGRKGISM 736
            + +F  KY R                       K           L+TI S       +
Sbjct: 514 LLLTFFYKYMRPLIEAGRVYIALPPLYRVKYASKKFDDKFAWTNDELETITSQNEARYEL 573

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
            R+KGLGEMNA  LWETT+NP+TR+L+RVKI DA  A+   + LMGD+VEPRRE+I+ N
Sbjct: 574 TRFKGLGEMNAPLLWETTMNPETRTLIRVKIDDAVLAEKRVTTLMGDKVEPRREWIEAN 632


>gi|78707335|gb|ABB46474.1| DNA gyrase subunit B [Acholeplasma axanthum]
 gi|78707337|gb|ABB46475.1| DNA gyrase subunit B [Acholeplasma axanthum]
 gi|78707339|gb|ABB46476.1| DNA gyrase subunit B [Acholeplasma axanthum]
          Length = 589

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 259/570 (45%), Positives = 372/570 (65%), Gaps = 4/570 (0%)

Query: 24  VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83
           V+KRP MYIG T G  GLHH+++E++DN+IDE+L GYAD I + L       V+DNGRGI
Sbjct: 1   VRKRPGMYIG-TTGADGLHHLVWEIVDNSIDEALAGYADDIILELLPGEVVRVTDNGRGI 59

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143
           P D+H   G  A E I+T LHAGGKF+  SYKVSGGLHGVG SVVNALS W  + + R  
Sbjct: 60  PVDIHPHTGRPAVETILTTLHAGGKFDSDSYKVSGGLHGVGASVVNALSEWYTVNVHRNN 119

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
             Y   +  GI    L+  G + + TGT   F     IF     ++++ L+ R+++L+FL
Sbjct: 120 KNYYQMYNRGIPAGDLIEKGLSEH-TGTITEFKFDPTIFKETQEYDFERLRQRIQQLAFL 178

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           N  ++I++ D R+    E T  Y+GG+  +  +L+ ++  + +S   ++   D+I++++ 
Sbjct: 179 NRGIKITIKDLRTEAVVENTYHYEGGLVEYAEFLNGNRVKVNKSLFYVEKMVDDINVEIT 238

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M++ND +++N+  FTNNIP ++GG H  G + ALTR + +Y + +   K  +   IG+D 
Sbjct: 239 MQYNDSFNQNIYSFTNNIPTREGGMHEDGFKMALTRILNNYAKANKMLKDTEDGFIGEDT 298

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG   +LS+K PDP+F  QTK KL ++EVR +V   +++GL  +L E+P +AK I+ KV
Sbjct: 299 REGLIVILSVKHPDPQFEGQTKTKLGNTEVRQIVSQILSEGLDRFLLENPQDAKAIIDKV 358

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + A   R AAR+AR+ TRRK  LD      KLADC  ++ +K+EL++VEGDSAGGSAKQG
Sbjct: 359 ILAQRARVAARKAREATRRKNPLDSLGFASKLADCRTKNAEKAELYIVEGDSAGGSAKQG 418

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R  E QAILPLRGK+LNVE+AR DK+LS+ EI  L  A+GTGIG +  D +K RYHKI+I
Sbjct: 419 RESEYQAILPLRGKVLNVEKARLDKILSNNEILMLFQAIGTGIGDEL-DPSKARYHKIVI 477

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDGAHIRTLLLTFF+R +  LI  G++Y  +PPLY ++ GK ++YV D+E+L + 
Sbjct: 478 MTDADVDGAHIRTLLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYDDEALPEI 537

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFID 592
                   +++ +     +  +      +D
Sbjct: 538 AATFDGRYQMQRYKGLGEMNPEQLWETTMD 567



 Score =  120 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 18/178 (10%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + +      +  ++ + + + L+    +  K    +  + D  
Sbjct: 427 LPLRGKVLNVEKARLDKILSNNEILMLFQAIGTGIGDELDPSKARYHKIVIMTDADVDGA 486

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSL 722
             R               + +F  ++ R   +     +         +G +I+       
Sbjct: 487 HIRT-------------LLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYDDEA 533

Query: 723 LDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L  I +   GR    MQRYKGLGEMN  QLWETT++P+TR+LLRV + DA  AD +FS
Sbjct: 534 LPEIAATFDGR--YQMQRYKGLGEMNPEQLWETTMDPETRTLLRVTLKDAMDADQVFS 589


>gi|293400718|ref|ZP_06644863.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305744|gb|EFE46988.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 644

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/593 (41%), Positives = 360/593 (60%), Gaps = 11/593 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD  SIQIL GLDAV+KRP MYIG TD   GLHH+++E++DN+IDE+L G+ + I
Sbjct: 1   MAEKTYDGSSIQILDGLDAVRKRPGMYIGSTD-GRGLHHLVWEIVDNSIDEALNGFGETI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGV 123
            +T+  DG   V D GRG+P D+H   G+   +VI T LHAGGKF+ Q  YK SGGLHGV
Sbjct: 60  KITIEKDGVICVEDEGRGMPVDMH-VSGVPTLQVIHTVLHAGGKFSSQGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNAL SW+++ + R+G IY+M F + G     L V G   N TG++  F+P   IF
Sbjct: 119 GASVVNALCSWMEVSVYRDGKIYQMRFEDGGKKIGKLEVIGKT-NKTGSKTRFMPDKKIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F++  +  R +E +FL   +++ + D+R  + RE    Y+ G+ AF+ YL   K+ 
Sbjct: 178 STTRFSFSQIAERAQEDAFLLEGLRLVVRDEREGKEREEVYHYEEGLVAFMEYLHEDKQT 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
             +      G  + I +D A ++ D Y EN+  F N +  KDGGTH +G R+A T+    
Sbjct: 238 FHKPVA-FSGEVNGIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGARNAFTKVFND 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  ++   K+ +++  G D REG T +LS+ +P+   +F  QTK KL + E ++ V+S V
Sbjct: 297 YARRNGLLKEKEKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTPEAKNAVDSIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP--GKLADCS 418
           ++ L+ +LEE+   A  ++KK+  AS  R+AAR+AR+  R+      +     GKLA   
Sbjct: 357 SEKLNFFLEENKELATTLIKKMQRASTAREAARKAREDARKGKSKGKSEKILSGKLASAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D +K EL+LVEGDSAGGSAKQGR  + QAILPLRGK+LN E+A    +  ++E+ T+I
Sbjct: 417 SKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKNEELNTII 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG G+G + F      YHK+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 477 HALGAGVGAN-FHAEDSNYHKVIIMTDADDDGAHIQILLLTFFYRYMRELIEKGMVYIAM 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           PPLY + +GK ++Y   +E L+    N      ++ +     + +       +
Sbjct: 536 PPLYKLQKGKEMRYAWTDEELDQLRKNFPKGYTLQRYKGLGEMNADQLWDTTM 588



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 142/415 (34%), Gaps = 19/415 (4%)

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE------LFLVEGDSAGGSAKQ 441
                      T  K V     + G   DC+ +   + +      + +V     G     
Sbjct: 226 AFMEYLHEDKQTFHKPVAFSGEVNGIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETG 285

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
            R+     +     +   + + +      S     L   L  GI ++          K+ 
Sbjct: 286 ARN-AFTKVFNDYARRNGLLKEKEKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLG 344

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
              +A      I +  L FF  +   L            +  + R  + +    +   + 
Sbjct: 345 T-PEAKNAVDSIVSEKLNFFLEENKEL--------ATTLIKKMQRASTAREAARKAREDA 395

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                    E  L        SK+  +  +                  K      +   V
Sbjct: 396 RKGKSKGKSEKILSGKLASAQSKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKV 455

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
            N E     N+    +L   ++ +      ++H   +N   ++           +     
Sbjct: 456 LNTEKASITNIEKNEELNTIIHALGAGVGANFHAEDSNYHKVIIMTDADDDGAHI--QIL 513

Query: 682 IFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
           + +F  +Y R    + +    +  L  +  G +++       LD +     KG ++QRYK
Sbjct: 514 LLTFFYRYMRELIEKGMVYIAMPPLYKLQKGKEMRYAWTDEELDQLRKNFPKGYTLQRYK 573

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GLGEMNA QLW+TT+ P+TR+L++V I DA  A+   S LMGD+   RR++I+EN
Sbjct: 574 GLGEMNADQLWDTTMCPETRTLIQVSIEDAVVAEKRVSVLMGDKANLRRDWIEEN 628


>gi|289705900|ref|ZP_06502279.1| DNA gyrase, B subunit [Micrococcus luteus SK58]
 gi|289557385|gb|EFD50697.1| DNA gyrase, B subunit [Micrococcus luteus SK58]
          Length = 720

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 272/617 (44%), Positives = 376/617 (60%), Gaps = 43/617 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D      Y A +I +L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GYA 
Sbjct: 38  DRKVPGEYGASAITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYAT 96

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VTL  DG   V+D+GRGIP DLH  EG    EV+MT LHAGGKF    Y VSGGLHG
Sbjct: 97  GIDVTLQADGGVRVADDGRGIPVDLHPTEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHG 156

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG+SVVNALS  +   ++R+G+++ MSF + G+    L V G A + TGT  TF P  +I
Sbjct: 157 VGISVVNALSRRVDTEVRRQGHVWRMSFADGGVPQGEL-VKGEAMDATGTVQTFYPDPEI 215

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE--------------------- 220
           F   +F+Y+TL+ R ++++FLN  ++I+L D+R  E  E                     
Sbjct: 216 FDSIEFDYETLRARFQQMAFLNRGLRITLTDERVQESNEVVDDEIAGEGAAGEDVAENGL 275

Query: 221 ------------ITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGSR----DNISIDLA 262
                       +T  Y+ G+  +V +L+  +  + +    I  +        ++++++A
Sbjct: 276 AEEAEQEPQRRSVTYLYENGLLDYVQHLNSAKKVEYVHDDVIAFEAEDVSDGRSMAVEVA 335

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+W   Y E+V  + N I   +GGTH  G R+ALT  +  Y  +    K  + ++ G+D 
Sbjct: 336 MQWTSAYSESVHTYANTINTHEGGTHEEGFRAALTSLVNRYAREKEILKPKEDNLTGEDI 395

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+V+S+K+ +P+F  QTK KL +SE R  V   V D L  W E +P  AK I++K 
Sbjct: 396 REGLTAVISVKLSEPQFEGQTKTKLGNSEARGFVSKAVTDHLGDWFERNPGPAKEIIRKA 455

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + AS  R AAR+ARD  RRK  L+   +PGKLADCS +DP++ E+++VEGDSAGGSAKQG
Sbjct: 456 IMASHARLAARKARDNARRKSPLESFGMPGKLADCSSKDPERCEVYIVEGDSAGGSAKQG 515

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+ E QAILPLRGKILNVERAR DK L + EI ++ITA GT IG++ FDI+KLRYHKI++
Sbjct: 516 RNPETQAILPLRGKILNVERARLDKALGNAEIQSMITAFGTNIGEE-FDISKLRYHKIVL 574

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           M DADVDG HI TLLLT  FR M  LI  G +++ +PPLY I    +       +   D 
Sbjct: 575 MADADVDGQHITTLLLTVLFRYMRPLIEAGHVFLAQPPLYRIKWSNAPHDYVFSDEERDA 634

Query: 563 LINQSLSEEIELFCDSK 579
            +   L++      D+ 
Sbjct: 635 AVEAGLAKGWRYPKDNG 651



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LW+TT++P+ R+LL+V + DA+ AD +FS LMG++VE RR FIQ+N
Sbjct: 652 VQRYKGLGEMNYQELWDTTMDPEHRTLLQVTMEDAAAADAVFSMLMGEDVESRRSFIQQN 711

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 712 AKDIRFLDV 720


>gi|33469296|gb|AAQ19685.1| topoisomerase IV subunit B [Staphylococcus haemolyticus]
          Length = 658

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 266/592 (44%), Positives = 375/592 (63%), Gaps = 16/592 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY + I VT
Sbjct: 1   NHYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGNEINVT 59

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N D S ++ DNGRG+P+ +H   G    EVI T LHAGGKF Q  YK SGGLHGVG SV
Sbjct: 60  INQDNSISIEDNGRGMPSGMHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 118

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VNALS WL++ I R+GNIY+ SF N G+  + L V       TGT+VTF P  +IF    
Sbjct: 119 VNALSEWLEVEIHRDGNIYKQSFKNGGVPASGL-VKSGKTKKTGTKVTFKPDPEIFKATT 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN++TL  RL+E +FL  +++I+L D R+ + RE    Y+ GI+ FVSY++  K+ L  
Sbjct: 178 TFNFETLSERLQESAFLLKNLKITLKDLRNGKEREDVYHYEEGIKEFVSYVNEGKEVLH- 236

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G+ + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    Y  
Sbjct: 237 DVTMFTGASNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYAR 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           +    K+  +++ G+D REG T+V+S+++P+   +F  QTK KL +SE RS V+S V+D 
Sbjct: 297 RINELKEKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSDK 356

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421
           L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL     ++
Sbjct: 357 LPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN 416

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I  +
Sbjct: 417 TEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTI 476

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G D F I    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  PPL
Sbjct: 477 GAGVGND-FKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPL 535

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           Y +     + K ++Y   ++ LE           +       G ++   L  
Sbjct: 536 YKLEKGKGKSKQVEYAWTDDELEKLQKKLGKGF-MLQRYKGLGEMNPEQLWE 586



 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 372 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 431

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 432 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFKIEDSNY 491

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           + ++           +      F F      + + R+      +  L    G   ++   
Sbjct: 492 NRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKSKQVEYA 551

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR+L+RV+I D  ++    
Sbjct: 552 WTDDELEKLQKKLGKGFMLQRYKGLGEMNPEQLWETTMNPETRTLIRVQIEDEMRSSKRV 611

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V PRRE+I+ +
Sbjct: 612 TTLMGDKVAPRREWIESH 629


>gi|223043196|ref|ZP_03613243.1| DNA topoisomerase IV, B subunit [Staphylococcus capitis SK14]
 gi|222443407|gb|EEE49505.1| DNA topoisomerase IV, B subunit [Staphylococcus capitis SK14]
          Length = 666

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/599 (43%), Positives = 368/599 (61%), Gaps = 17/599 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY
Sbjct: 1   MAVN-KQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITVT+N D S ++ DNGRG+PT +H   G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GDEITVTINQDDSISIEDNGRGMPTGIHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+GNIY  SF + GI    L   G             P  
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYTQSFKDGGIPATGLNKKGKTKKTGTKVTF-KPDP 176

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     FN+D L  RL+E +FL  +++I+L D RS + RE    Y+ GI+ FVSY++ 
Sbjct: 177 EIFKATTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKEREEVYHYEEGIKEFVSYVNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G  +NI +++A ++ND Y E++L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 GKEVLH-DVTTFSGLANNIEVEVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL +SE RS V
Sbjct: 296 VFNDYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S V++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL
Sbjct: 356 DSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI
Sbjct: 416 TPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G D F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G +
Sbjct: 476 NTIIHTIGAGVGND-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +I  PPLY +     + K ++Y   ++ LE                   G ++   L  
Sbjct: 535 FIALPPLYKLEKGKGKTKKVEYAWTDDELEKLQKQLGKGF-TLQRYKGLGEMNPEQLWE 592



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           + ++           +      F F      + + R+      +  L    G   K+   
Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKKVEYA 557

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 558 WTDDELEKLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V PRRE+I+ +
Sbjct: 618 TTLMGDKVAPRREWIESH 635


>gi|78707333|gb|ABB46473.1| DNA gyrase subunit B [Acholeplasma axanthum]
          Length = 589

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 258/570 (45%), Positives = 372/570 (65%), Gaps = 4/570 (0%)

Query: 24  VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83
           V+KRP MYIG T G  GLHH+++E++DN+IDE+L GYAD I + L       V+DNGRGI
Sbjct: 1   VRKRPGMYIG-TTGTDGLHHLVWEIVDNSIDEALAGYADDIILELLPGEVVRVTDNGRGI 59

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143
           P D+H   G  A E I+T LHAGGKF+  SYKVSGGLHGVG SVVNALS W  + + R  
Sbjct: 60  PVDIHPHTGRPAVETILTTLHAGGKFDSDSYKVSGGLHGVGASVVNALSEWYTVNVHRNN 119

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
             Y   +  GI    L+  G + + TGT   F     IF     ++++ L+ R+++L+FL
Sbjct: 120 KNYYQMYNRGIPAGDLIEKGLSEH-TGTITEFKFDPTIFKETQEYDFERLRQRIQQLAFL 178

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           N  ++I++ D R+    E T  Y+GG+  +  +L+ ++  + +S   ++   D+I++++ 
Sbjct: 179 NRGIKITIKDLRTEAVVENTYHYEGGLVEYAEFLNGNRVKVNKSLFYVEKMVDDINVEIT 238

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M++ND +++N+  FTNNIP ++GG H  G + ALTR + +Y + +   K  +   IG+D 
Sbjct: 239 MQYNDSFNQNIYSFTNNIPTREGGMHEDGFKMALTRILNNYAKANKMLKDTEDGFIGEDT 298

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG   +LS+K PDP+F  QTK KL ++EVR +V   +++GL  +L E+P +AK I+ KV
Sbjct: 299 REGLIVILSVKHPDPQFEGQTKTKLGNTEVRQIVSQILSEGLDRFLLENPQDAKAIIDKV 358

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + A   R AAR+AR+ TRRK  LD      KLADC  ++ +K+EL++VEGDSAGGSAKQG
Sbjct: 359 VLAQRARVAARKAREATRRKNPLDSLGFASKLADCRTKNAEKAELYIVEGDSAGGSAKQG 418

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R  E QAILPLRGK+LNVE+AR DK+LS+ EI  L  A+G+GIG +  D +K RYHKI+I
Sbjct: 419 RESEYQAILPLRGKVLNVEKARLDKILSNNEILMLFQAIGSGIGDEL-DPSKARYHKIVI 477

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDGAHIRTLLLTFF+R +  LI  G++Y  +PPLY ++ GK ++YV D+E+L + 
Sbjct: 478 MTDADVDGAHIRTLLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYDDEALPEI 537

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFID 592
                   +++ +     +  +      +D
Sbjct: 538 AATFDGRYQMQRYKGLGEMNPEQLWETTMD 567



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 18/178 (10%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                    +E+A +  + +      +  ++ S + + L+    +  K    +  + D  
Sbjct: 427 LPLRGKVLNVEKARLDKILSNNEILMLFQAIGSGIGDELDPSKARYHKIVIMTDADVDGA 486

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSL 722
             R               + +F  ++ R   +     +         +G +I+       
Sbjct: 487 HIRT-------------LLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYDDEA 533

Query: 723 LDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L  I +   GR    MQRYKGLGEMN  QLWETT++P+TR+LLRV + DA  AD +FS
Sbjct: 534 LPEIAATFDGR--YQMQRYKGLGEMNPEQLWETTMDPETRTLLRVTLKDAMDADQVFS 589


>gi|239916576|ref|YP_002956134.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665]
 gi|281414960|ref|ZP_06246702.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665]
 gi|239837783|gb|ACS29580.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665]
          Length = 720

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 272/617 (44%), Positives = 377/617 (61%), Gaps = 43/617 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D      Y A +I +L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GYA 
Sbjct: 38  DRKVPGEYGASAITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYAT 96

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VTL  DG   V+D+GRGIP DLH  EG    EV+MT LHAGGKF    Y VSGGLHG
Sbjct: 97  GIDVTLQADGGVRVADDGRGIPVDLHPTEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHG 156

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG+SVVNALS  +   ++R+G+++ MSF + G+    L V G A + TGT  TF P ++I
Sbjct: 157 VGISVVNALSRRVDTEVRRQGHVWRMSFADGGVPQGEL-VKGEATDATGTVQTFYPDAEI 215

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE--------------------- 220
           F   +F+Y+TL+ R ++++FLN  ++I+L D+R  E  E                     
Sbjct: 216 FDSIEFDYETLRARFQQMAFLNKGLRITLTDERVQESNEVVDDEIAGEGAAGEDVAENGL 275

Query: 221 ------------ITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGSRD----NISIDLA 262
                       +T  Y+ G+  +V +L+  +  + +    I  +        ++++++A
Sbjct: 276 AEDAEQEPQRRSVTYLYENGLLDYVQHLNSAKKVEYVHDDVIAFEAEDFSDGRSMAVEVA 335

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+W   Y E+V  + N I   +GGTH  G R+ALT  +  Y  +    K  + ++ G+D 
Sbjct: 336 MQWTSAYSESVHTYANTINTHEGGTHEEGFRAALTSLVNRYAREKEILKPKEDNLSGEDI 395

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+V+S+K+ +P+F  QTK KL +SE R  V   V D L  W E +P  AK I++K 
Sbjct: 396 REGLTAVISVKLSEPQFEGQTKTKLGNSEARGFVSKAVTDHLGDWFERNPGPAKEIIRKA 455

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + AS  R AAR+ARD  RRK  L+   +PGKLADCS +DP++ E+++VEGDSAGGSAKQG
Sbjct: 456 IMASHARLAARKARDNARRKSPLESFGMPGKLADCSSKDPERCEVYIVEGDSAGGSAKQG 515

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+ E QAILPLRGKILNVERAR DK L + EI ++ITA GT IG++ FDI+KLRYHKI++
Sbjct: 516 RNPETQAILPLRGKILNVERARLDKALGNAEIQSMITAFGTNIGEE-FDISKLRYHKIVL 574

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           M DADVDG HI TLLLT  FR M  LI  G +++ +PPLY I    +       +   D 
Sbjct: 575 MADADVDGQHITTLLLTVLFRYMRPLIEAGHVFLAQPPLYRIKWSNAPHDYVFSDEERDA 634

Query: 563 LINQSLSEEIELFCDSK 579
            +   L++      D+ 
Sbjct: 635 AVEAGLAKGWRYPKDNG 651



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LW+TT++P+ R+LL+V + DA+ AD +FS LMG++VE RR FIQ+N
Sbjct: 652 VQRYKGLGEMNYQELWDTTMDPEHRTLLQVTMEDAAAADAVFSMLMGEDVESRRTFIQQN 711

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 712 AKDIRFLDV 720


>gi|90960995|ref|YP_534911.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118]
 gi|301300484|ref|ZP_07206683.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820189|gb|ABD98828.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118]
 gi|300213943|gb|ADJ78359.1| DNA gyrase subunit B [Lactobacillus salivarius CECT 5713]
 gi|300851931|gb|EFK79616.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 652

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 282/592 (47%), Positives = 404/592 (68%), Gaps = 7/592 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
              +   YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+AD
Sbjct: 11  QEEKAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFAD 69

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D S TV DNGRGIP D+ K+ G  A E + T LHAGGKF    YKVSGGLHG
Sbjct: 70  EINVTVEEDNSITVKDNGRGIPVDIQKKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHG 129

Query: 123 VGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179
           VG SVVNALS+ L +++ R  + N+Y M F  G +   + V G    ++ GT V F P  
Sbjct: 130 VGASVVNALSTNLDVKVMREDDENVYGMDFKLGKVATSMTVVGKCPRHEHGTIVHFKPDP 189

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           DIF+    ++ + L  R+REL+FLN  ++I++ DKR  EP      Y GGI+ ++ +L++
Sbjct: 190 DIFTETTTYDINVLTKRIRELAFLNKGLKITIDDKRQEEPTHEEFHYAGGIKHYIEFLNK 249

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ +   PI ++G ++ I++++A+++ + +H N+L FTNNI   +GGTH SG ++ALTR
Sbjct: 250 GKEVIFPEPIYVEGEQNGITVEVALQYTNDFHSNLLSFTNNIHTYEGGTHESGFKTALTR 309

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  KS   K++  ++ G+D REG T+V+SIK P+P+F  QTK KL +S+ R V + 
Sbjct: 310 VINDYGRKSGLIKENDANLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLGNSDARKVTDK 369

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++  + ++ E+P  AK IV+K L A+  R AA+RAR++TR+K  L+I++LPGKLAD +
Sbjct: 370 LFSETFNKFMLENPTVAKQIVEKGLLAAKARIAAKRAREVTRKKNGLEISNLPGKLADNT 429

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+++EI +L 
Sbjct: 430 SKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATIDRILANEEIRSLF 489

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTG G++ FD++K  YHK+IIMTDADVDGAHIRTLLLT  +R M  ++  G++YI +
Sbjct: 490 TALGTGFGEE-FDVSKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDAGYVYIAQ 548

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY + +GK ++Y+  +E L D L +   S + +       G +    L  
Sbjct: 549 PPLYQVRQGKMIKYIDSDEELNDVLGSLPPSPKPVIQRYKGLGEMDAEQLWE 600



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT+NP+ R LLRV+++DA +A+++F  LMGD V PRR+FI++N
Sbjct: 584 IQRYKGLGEMDAEQLWETTMNPENRRLLRVELSDAEEANEVFEMLMGDHVGPRRQFIEDN 643

Query: 796 SLPS-ALDI 803
           +     LD+
Sbjct: 644 ATFVNNLDV 652


>gi|290958999|ref|YP_003490181.1| DNA gyrase subunit B [Streptomyces scabiei 87.22]
 gi|260648525|emb|CBG71636.1| DNA gyrase subunit B [Streptomyces scabiei 87.22]
          Length = 681

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 286/651 (43%), Positives = 400/651 (61%), Gaps = 24/651 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
               ++YDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD 
Sbjct: 22  EASATAYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADT 80

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGV
Sbjct: 81  IDVTILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGV 140

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS+ + + IK +G+ +   +  G+   PL     A ++ GT VTF    DIF 
Sbjct: 141 GVSVVNALSTRVSVEIKTDGHRWTQDYKLGVPTAPLAQ-HEATDEHGTTVTFWADPDIFE 199

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKG 227
             +++++TL  R +E++FLN  ++I+L D+R                  E + ++  Y+G
Sbjct: 200 TTEYSFETLSRRFQEMAFLNKGLRINLADERESAKATAGADEAGEDEKHEVKSVSYHYEG 259

Query: 228 GIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           GI  FV Y   R    +  + I ++      ++S++LAM+WN GY E V  F N I   +
Sbjct: 260 GIVDFVKYLNSRKGDVVHPTVIDLEAEDKDRSLSLELAMQWNSGYTEGVYSFANIIHTHE 319

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH  G R+ALT  +  Y  +    ++   ++ GDD REG T+++S+K+ +P+F  QTK
Sbjct: 320 GGTHEEGFRAALTNLVNKYAREKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTK 379

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++EV++ V+  V + L+ WL+ +P+EA  IV+K + A+  R AAR+ARDLTRRKG+
Sbjct: 380 TKLGNTEVKTFVQKVVYEHLNDWLDRNPVEAADIVRKGIQAATARVAARKARDLTRRKGL 439

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+AR
Sbjct: 440 LETASLPGKLSDCQSNDPIKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKAR 499

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR 
Sbjct: 500 IDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRF 558

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           M  L+  G +++ +PPLY I  G+        +   D LI         +  DS      
Sbjct: 559 MRPLVEAGHVFLSRPPLYKIKWGREDIEYAYSDRERDALIEMGRQRGKRIREDSIQRFKG 618

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
             L     + L+I  + ++       T  + A    +F+    +++    A
Sbjct: 619 --LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 667



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR-KGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR +G      S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 595 DALIEMGRQRGKRIREDSIQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 654

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 655 SVLMGEDVEARRAFIQRNAKDVRFLDI 681


>gi|314933532|ref|ZP_07840897.1| DNA topoisomerase IV, B subunit [Staphylococcus caprae C87]
 gi|313653682|gb|EFS17439.1| DNA topoisomerase IV, B subunit [Staphylococcus caprae C87]
          Length = 664

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 261/595 (43%), Positives = 365/595 (61%), Gaps = 16/595 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY D I
Sbjct: 2   NKQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGDEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVT+N D S ++ DNGRG+PT +H   G    EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  TVTINQDDSISIEDNGRGMPTGIHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS WL++ I R+GNIY  SF + GI    L   G             P  +IF 
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQSFKDGGIPATGLNKKGKTKKTGTKVTF-KPDPEIFK 178

Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FN+D L  RL+E +FL  +++I+L D RS + RE    Y+ GI+ FVSY++  K+ 
Sbjct: 179 ATTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKEREEVYHYEEGIKEFVSYVNEGKEV 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L        G  +NI +++A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    
Sbjct: 239 LH-DVTTFSGLANNIEVEVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFND 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL +SE RS V+S V
Sbjct: 298 YARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVV 357

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL    
Sbjct: 358 SEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKHKDTLLSGKLTPAQ 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I
Sbjct: 418 SKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G D F I    Y+++IIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  
Sbjct: 478 HTIGAGVGND-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIAL 536

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY +     + K ++Y   ++ LE                   G ++   L  
Sbjct: 537 PPLYKLEKGKGKTKKVEYAWTDDELEKLQKQLGKGF-TLQRYKGLGEMNPEQLWE 590



 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKHKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFKIEDSNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           + ++           +      F F      + + R+      +  L    G   K+   
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKKVEYA 555

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 556 WTDDELEKLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V PRRE+I+ +
Sbjct: 616 TTLMGDKVAPRREWIESH 633


>gi|307128690|ref|YP_003880720.1| DNA gyrasesubunit B [Candidatus Sulcia muelleri CARI]
 gi|306483152|gb|ADM90022.1| DNA gyrase B subunit [Candidatus Sulcia muelleri CARI]
          Length = 638

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 246/588 (41%), Positives = 361/588 (61%), Gaps = 9/588 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y + +IQ + G++ V+ RPSMYIGD  G  GLHHM+YEV+DN+IDESL G+ + I VT+
Sbjct: 2   NYTSKNIQYIDGIEHVRLRPSMYIGDI-GIQGLHHMVYEVVDNSIDESLSGFCNKIYVTI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + D S T+ DNGRGIP DLHK++GISA E++MT++ AGGKF+  SYKVSGGLHGVG+S V
Sbjct: 61  HKDNSITILDNGRGIPVDLHKKKGISALELVMTKIGAGGKFDNNSYKVSGGLHGVGISCV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L  ++ R G IYE  +  GI  + + + G   N  GT+++F     IF    +N
Sbjct: 121 NALSSNLIAKVYRNGKIYEQKYSRGIPISKINIIGKCHNKVGTKISFKADKLIFKKIKYN 180

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y  L +RLRELS+LN  + I L+D+R  +            +  +       +    + I
Sbjct: 181 YSILMNRLRELSYLNKGLSIYLLDEREIDKNGNFKKKIFFSKKGIKEFLIFIEKKNDNII 240

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+     + ++LAMR+N  + E +  + NNI    GGTH+SG + ALT+ +  +  K F
Sbjct: 241 YIKKKNLKLELELAMRFNSSFKEKIYSYVNNINTSQGGTHISGFKRALTKTLKKFFYKFF 300

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             KK+K  + G + REG T++L+I++ +P+F  Q K KLV++E+  +VE  +N  +S + 
Sbjct: 301 PLKKNKIEITGKNLREGLTAILAIRIINPQFEGQIKNKLVNNEIIGLVEKIINKHISIFF 360

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           +++    K I+KK+  +   +   ++AR+L  +K  +    LP KLADCS  DP   E++
Sbjct: 361 KKNIFFLKKILKKIFLSVKAQKTLKKARELINKKTSIHK-FLPIKLADCSFNDPNLCEIY 419

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI--- 485
           LVEGDSAGG+AKQGR R+ QA+LPLRGKILNVE+   +K+ S++EI  +I+ALG  I   
Sbjct: 420 LVEGDSAGGTAKQGRERKFQAVLPLRGKILNVEKNIINKIFSNEEIKNIISALGVYIFFE 479

Query: 486 -GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
             + + +I+ LRY KIIIMTDAD+DG+HI TL+LT FF+ M  LI  G++YI  PPL+ I
Sbjct: 480 KKKINLNIDNLRYKKIIIMTDADIDGSHISTLILTLFFKYMRILIEKGYIYIATPPLFLI 539

Query: 545 TRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKNDLRN 589
                  Y  +E+     L    ++   +         G ++   L  
Sbjct: 540 KTFNKKFYAWNEKERNKILKKLKMNSLKKISVQRYKGLGEMNAEQLWE 587



 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 9/202 (4%)

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL---ANRLNFIAEKSEKSWHGSINNS 660
                    +E+ +I+ +F+ E  + I  +L   +     ++N   +         + ++
Sbjct: 442 LPLRGKILNVEKNIINKIFSNEEIKNIISALGVYIFFEKKKINLNIDNLRYKKIIIMTDA 501

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
           DI    I+  +   F      +   G  Y       + + +          ++ KI    
Sbjct: 502 DIDGSHISTLILTLFFKYMRILIEKGYIYIATPPLFLIKTFNKKFYAWNEKERNKI---- 557

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
             L  +     K IS+QRYKGLGEMNA QLWETT+NP  R+L +V I++   A ++F  L
Sbjct: 558 --LKKLKMNSLKKISVQRYKGLGEMNAEQLWETTMNPINRTLRKVTISNLKIAKNIFYML 615

Query: 781 MGDEVEPRREFIQENSLPSALD 802
           MG+ V PR++FI++N + + +D
Sbjct: 616 MGNNVIPRKKFIEKNYIFANID 637


>gi|227891673|ref|ZP_04009478.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741]
 gi|227866476|gb|EEJ73897.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741]
          Length = 652

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 282/592 (47%), Positives = 404/592 (68%), Gaps = 7/592 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
              +   YDA  IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+AD
Sbjct: 11  QEEKAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFAD 69

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D S TV DNGRGIP D+ K+ G  A E + T LHAGGKF    YKVSGGLHG
Sbjct: 70  EINVTVEEDNSITVKDNGRGIPVDIQKKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHG 129

Query: 123 VGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179
           VG SVVNALS+ L +++ R  + N+Y M F  G +   + V G    ++ GT V F P  
Sbjct: 130 VGASVVNALSTNLDVKVMREDDENVYGMDFKLGKVATSMTVVGKCPRHEHGTIVHFKPDP 189

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           DIF+    ++ + L  R+REL+FLN  ++I++ DKR  EP      Y GGI+ ++ +L++
Sbjct: 190 DIFTETTTYDINVLTKRIRELAFLNKGLKITIDDKRQEEPTHEEFHYAGGIKHYIEFLNK 249

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ +   PI ++G ++ I++++A+++ + +H N+L FTNNI   +GGTH SG ++ALTR
Sbjct: 250 GKEVIFPEPIYVEGEQNGITVEVALQYTNDFHSNLLSFTNNIHTYEGGTHESGFKTALTR 309

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  KS   K++  ++ G+D REG T+V+SIK P+P+F  QTK KL +S+ R V + 
Sbjct: 310 VINDYGRKSGLIKENDANLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLGNSDARKVTDK 369

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++  + ++ E+P  AK IV+K L A+  R AA+RAR++TR+K  L+I++LPGKLAD +
Sbjct: 370 LFSETFNKFMLENPTVAKQIVEKGLLAAKARIAAKRAREVTRKKNGLEISNLPGKLADNT 429

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L+++EI +L 
Sbjct: 430 SKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATIDRILANEEIRSLF 489

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALGTG G++ FD++K  YHK+IIMTDADVDGAHIRTLLLT  +R M  ++  G++YI +
Sbjct: 490 TALGTGFGEE-FDVSKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDAGYVYIAQ 548

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           PPLY + +GK ++Y+  +E L D L +   S + +       G +    L  
Sbjct: 549 PPLYQVRQGKMIKYIDSDEELNDVLGSLPSSPKPVIQRYKGLGEMDAEQLWE 600



 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QLWETT+NP+ R LLRV+++DA +A+++F  LMGD V PRR+FI++N
Sbjct: 584 IQRYKGLGEMDAEQLWETTMNPENRRLLRVELSDAEEANEVFEMLMGDHVGPRRQFIEDN 643

Query: 796 SLPS-ALDI 803
           +     LD+
Sbjct: 644 ATFVNNLDV 652


>gi|299822648|ref|ZP_07054534.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
           20601]
 gi|299816177|gb|EFI83415.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
           20601]
          Length = 657

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/662 (39%), Positives = 385/662 (58%), Gaps = 21/662 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  +  + Y+ DSIQ+L+GLDAV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MSKPM--NEYNDDSIQVLEGLDAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGG 119
            + ITV +  D S ++ D GRG+P   H + G S  EVI+T LHAGGKF Q+  YK SGG
Sbjct: 58  GERITVKIYKDQSISIEDEGRGMPVGTH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGG 116

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALS WLK+ + R+G IYE +F + G   + L   G      GT++ F P 
Sbjct: 117 LHGVGSSVVNALSEWLKVTVYRDGAIYEQNFADGGKPVDKLKKIGKTK-RRGTKIHFKPD 175

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF +  FNYDTL  RLRE +FL   + I L D+R+    E    ++ G++ FV Y++ 
Sbjct: 176 PAIFPMTSFNYDTLSERLRESAFLLKGMAIELSDERTG--AEEIFQFEEGVKNFVEYINE 233

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  L      I G   +I ++LA ++NDGY EN+L F NN+  +  GTH SG+++A+TR
Sbjct: 234 GKDVLHPVVD-IDGESGSIEMELAFQFNDGYSENILSFVNNVRTRGAGTHESGMKAAMTR 292

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL ++E R+ V
Sbjct: 293 VFNDYARRVGMLKEKDKNLEGSDIREGLSAVLSIRVPENLLQFEGQTKEKLGTAEARAAV 352

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414
           ++ V + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL
Sbjct: 353 DAVVTEHLAYFLAENPDTSSLLVKKAIKAREAREAARKAREETRNGKKRKRSETILSGKL 412

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI
Sbjct: 413 TPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLPDILKNEEI 472

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G + F++    Y KI+IMTDAD DGAHI+ LLLTFF+R M  LI  G +
Sbjct: 473 STIIHTVGAGVGAE-FNLEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMTPLIEAGKI 531

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           +I  PPLY +++G   + V       +Y       E          +I +      ++  
Sbjct: 532 FIALPPLYKVSKGAGKKEVL------EYAWTDDELEGAISKIGKGYMIQRYKGLGEMNAD 585

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
              +  +        +  I+    +         +        +   + F  E  +    
Sbjct: 586 QLWETTMDPETRTLIRVRIDDIARAERRVATLMGDKVEPRRKWIEKHVEFTMEDDQNILE 645

Query: 655 GS 656
             
Sbjct: 646 NE 647



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 106/264 (40%), Gaps = 8/264 (3%)

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
                + +    +  ++               +      S  +          ++   ++
Sbjct: 370 TSSLLVKKAIKAREAREAARKAREETRNGKKRKRSETILSGKLTPAQSRNPNKNELYLVE 429

Query: 599 KLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
                      +    QA++     V N E  +  ++    +++  ++ +       ++ 
Sbjct: 430 GDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLPDILKNEEISTIIHTVGAGVGAEFNL 489

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
              N D +V           +      F +      I + +I      +  +     K +
Sbjct: 490 EDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMTPLIEAGKIFIALPPLYKVSKGAGKKE 549

Query: 716 IT----GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           +         L   I  IG KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I D +
Sbjct: 550 VLEYAWTDDELEGAISKIG-KGYMIQRYKGLGEMNADQLWETTMDPETRTLIRVRIDDIA 608

Query: 772 QADDLFSRLMGDEVEPRREFIQEN 795
           +A+   + LMGD+VEPRR++I+++
Sbjct: 609 RAERRVATLMGDKVEPRRKWIEKH 632


>gi|254387096|ref|ZP_05002370.1| DNA gyrase subunit B [Streptomyces sp. Mg1]
 gi|194345915|gb|EDX26881.1| DNA gyrase subunit B [Streptomyces sp. Mg1]
          Length = 686

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 280/659 (42%), Positives = 389/659 (59%), Gaps = 23/659 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYDA +IQ+L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V
Sbjct: 29  TASYDASAIQVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIDV 87

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP D+   EG  A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 88  TILADGGVRVVDNGRGIPVDIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 147

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + +KR+G  +   +  G     L       +  GT VTF    DIF   +
Sbjct: 148 VVNALSTKVAVEVKRDGYRWTQDYKLGAPTAALAKNEET-DAHGTTVTFWADGDIFETTE 206

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----------------SPEPREITMFYKGGI 229
           ++++TL  R +E++FLN  + ++L D+R                  P  R +  +Y+GGI
Sbjct: 207 YSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADDPDADAVEPPARTVKYYYEGGI 266

Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
             FV Y   R  + +  + I ++       +S+++AM+WN  Y E V  F N I   +GG
Sbjct: 267 VDFVKYLNSRKGEMIHPTVIDVEAEDKERMLSVEIAMQWNSQYTEGVYSFANTIHTHEGG 326

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK K
Sbjct: 327 THEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREGLTAIISVKLGEPQFEGQTKTK 386

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++E ++ V+  V++ L+ W + +P+EA  I++K + A+  R AAR+ARDLTRRKG+L+
Sbjct: 387 LGNTEAKTFVQKVVHEHLNDWFDRNPVEAADIIRKSIQAATARVAARKARDLTRRKGLLE 446

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE+AR D
Sbjct: 447 SASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARID 506

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           K+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M 
Sbjct: 507 KILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMR 565

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            L+  G +Y+ +PPLY I  G+        +   D L+         +  DS        
Sbjct: 566 PLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDSIQRFKGLG 625

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             N  +  +    +              QA          D E   S   + A  + F+
Sbjct: 626 EMNAEELRITTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 684



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +G+      K  S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 600 DALVELGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDDAAQADDLF 659

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 660 SVLMGEDVEARRSFIQRNAKDVRFLDI 686


>gi|295394842|ref|ZP_06805055.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972175|gb|EFG48037.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 664

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 275/652 (42%), Positives = 386/652 (59%), Gaps = 27/652 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ +  N  YDAD I +L+GL+AV+KRP MYIG T  E GLHH++YE++DNA+DE+L G+
Sbjct: 1   MTAD-DNRHYDADDITVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEIVDNAVDEALAGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT+  DG   V D GRGIP  +H  E +   +V++T LHAGGKF    Y VSGGL
Sbjct: 59  NDRIHVTILADGGVRVEDRGRGIPVAIHSTEKVPTLQVVLTILHAGGKFGGGGYAVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  +   + R+G ++  S+  G+    +   G A + TGT +TF P  +
Sbjct: 119 HGVGSSVVNALSKRMDAEVHRDGFVWRQSYERGVPTGEVTK-GEAADHTGTIITFWPDEE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------------EPREITMF 224
           IF    FN++TL+ R ++++FLN  + I+L D+R+                 +PRE+T  
Sbjct: 178 IFDTVQFNFETLRARFQQMAFLNKGLSITLRDERAEQVNDDDVQLEEQEEEFKPREVTFK 237

Query: 225 YKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
           Y  G+  +V YL+  K  +P+ +  I  +     + I++++AM+W   Y E+V  + N I
Sbjct: 238 YDNGLFDYVKYLNSTKKSEPVHEDIISFEAEDTEETIALEVAMQWTSSYAESVHTYANTI 297

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R ALT  I +Y  +    K+   ++ GDD REG T+V+SIK+ +P+F 
Sbjct: 298 NTHEGGTHEEGFRIALTNLINAYAREQKLLKEKDTNLTGDDVREGLTAVISIKLGEPQFE 357

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE R  V+  V D L  WLE +P++AK +V+K + AS  R AAR+AR+ TR
Sbjct: 358 GQTKTKLGNSEARGFVQRVVRDHLGHWLESNPMQAKEVVRKAIQASQARMAARKAREATR 417

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK +L+ + LPGKL DC  +DP  SE+F+VEGDSAGGSA QGR    QAILPLRGKILNV
Sbjct: 418 RKSLLESSGLPGKLKDCQSKDPSISEVFIVEGDSAGGSAVQGRDPLTQAILPLRGKILNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR D+ LS+ E+ ++ITA GTGIG D FDI KLRYHKI++M DADVDG HI TLLLT 
Sbjct: 478 EKARLDRALSNLEVQSMITAFGTGIG-DEFDIEKLRYHKIVLMADADVDGQHITTLLLTL 536

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
            FR M  LI  G +Y+  PPLY I     + ++   +   +  L +   + +        
Sbjct: 537 IFRYMKPLIERGHVYLATPPLYRIKWSNAADEFAYTDRERDALLTDGRANGKRLPKELGI 596

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                    N+ +                  T  +  V   +F+     +++
Sbjct: 597 QRYKGLGEMNYHELWETTMNPDHRLLKQV--TLDDAMVADEIFSVLMGDDVD 646



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 8/88 (9%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + GR       K + +QRYKGLGEMN  +LWETT+NPD R L +V + DA  AD++
Sbjct: 577 DALLTDGRANGKRLPKELGIQRYKGLGEMNYHELWETTMNPDHRLLKQVTLDDAMVADEI 636

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V+ R+ FIQEN+     LDI
Sbjct: 637 FSVLMGDDVDSRKRFIQENAKDVRFLDI 664


>gi|242373650|ref|ZP_04819224.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylococcus epidermidis
           M23864:W1]
 gi|242348618|gb|EES40220.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylococcus epidermidis
           M23864:W1]
          Length = 664

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 261/595 (43%), Positives = 366/595 (61%), Gaps = 16/595 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY D I
Sbjct: 2   NKQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGDEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVT+N D S ++ DNGRG+PT +H   G    EVI T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  TVTINKDDSISIKDNGRGMPTGIHAS-GKPTVEVIFTILHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS WL++ I R+GNIY  SF + G+    L   G             P  +IF 
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQSFKDGGMPATGLNKKGKTKKTGTKVTF-KPDPEIFK 178

Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FN+D L  RL+E +FL  +++I+L D RS + RE    Y+ GI+ FVSY++  K+ 
Sbjct: 179 ATTSFNFDVLSERLQESAFLLKNLKITLTDLRSGKEREEVYHYEEGIKEFVSYVNEGKEV 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L        G  +NI +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR    
Sbjct: 239 LH-DVTTFSGLANNIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFND 297

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G+D REG T+++S+++P+   +F  QTK KL +SE RS V+S V
Sbjct: 298 YARRINELKEKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVV 357

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
           ++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL    
Sbjct: 358 SEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQ 417

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++  K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI T+I
Sbjct: 418 SKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTII 477

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G + F I    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G ++I  
Sbjct: 478 HTIGAGVGNE-FKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIAL 536

Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY +     + K ++Y   ++ LE                   G ++   L  
Sbjct: 537 PPLYKLEKGKGKSKKVEYAWTDDELEKLQKQLGKGF-TLQRYKGLGEMNPEQLWE 590



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNEFKIEDSNY 495

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717
           + ++           +      F F      + + R+      +  L        K++  
Sbjct: 496 NRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKSKKVEYA 555

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMN  QLWETT+NP+TR+L+RV++ D  ++    
Sbjct: 556 WTDDELEKLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V PRRE+I+ +
Sbjct: 616 TTLMGDKVAPRREWIESH 633


>gi|145344184|ref|XP_001416617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576843|gb|ABO94910.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 662

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/593 (42%), Positives = 354/593 (59%), Gaps = 11/593 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++  YDA SIQ+L+GL+ V+KRP MYIG T    GLHH+++EVLDN++DE   G+A  + 
Sbjct: 20  ESGDYDAGSIQVLQGLEPVRKRPGMYIGSTS-TKGLHHLVWEVLDNSVDEVQAGHASHVR 78

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGV 123
           V +  +G  +V D+GRGIPTD+H   G S+ E ++T LHAGGKF  +   Y VSGGLHGV
Sbjct: 79  VVVEENGFVSVVDDGRGIPTDVHPVTGKSSLETVLTILHAGGKFGGDSSGYHVSGGLHGV 138

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181
           G+SVVNALS  +++ + R GN Y  SF  GI   P+       +G   GT + F P   I
Sbjct: 139 GISVVNALSELVEVTVWRNGNEYIQSFSRGIALGPMQEKKQDGSGQKKGTMIRFKPDDQI 198

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLI--DKRSPEPREITMFYKGGIEAFVSYLDRH 239
           F    F+   ++ R++EL+FLNS  ++ L   DK++ E  +  + +  G++ +V  L   
Sbjct: 199 FDKVKFDPTIIRTRMKELAFLNSGTELHLRTFDKKTKEYEDEKLLFAEGLKDYVLDLTSD 258

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L   PI   G+ D + ++ A+ W  D Y + +L + N+I   DGGTHL GL+ +LT+
Sbjct: 259 ATRLH-EPITFSGTMDGVRVEGALCWTADSYSDTLLGYANSIRTTDGGTHLDGLKYSLTK 317

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +     K+   K    ++ GD  REG + V+++ +P+P F  QTK +L +SEVR +VE+
Sbjct: 318 TLNVVSRKAKLLKDSDPNLGGDHIREGLSGVIAVWVPEPEFEGQTKTRLGNSEVRRIVEN 377

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ND ++  +E +P   K I  K   A    +AA+RAR++ RRK VL    LPGKL+DCS
Sbjct: 378 IANDAVAGHMEFNPSVLKSIFAKAQSAFKAAEAAKRAREMVRRKTVLTSNRLPGKLSDCS 437

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML-SSQEIGTL 477
             D  ++E+FLVEGDSAGGS KQGR R  QA+LPLRGKI+NVER      L  + EI  +
Sbjct: 438 SSDADQTEIFLVEGDSAGGSCKQGRDRGFQAVLPLRGKIMNVERKLDAAALYKNTEITNM 497

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I+ALG G   +  D   LRY KIII+TDADVDGAHIRTLLLTF +R    L   G++Y  
Sbjct: 498 ISALGLGGMGEDLDTTALRYSKIIILTDADVDGAHIRTLLLTFLYRYQRDLFEKGYVYAA 557

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN 589
            PPLY +  GK   Y  DE+ L++ L++               G +    L +
Sbjct: 558 VPPLYKVVVGKKETYCYDEDDLQEVLVSLPEGGAKHIQRFKGLGEMMPEQLWS 610



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 681 SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI-SMQ 737
            + +F  +Y+R    +  +      +  ++    +        L + + S+   G   +Q
Sbjct: 536 LLLTFLYRYQRDLFEKGYVYAAVPPLYKVVVGKKETYCYDEDDLQEVLVSLPEGGAKHIQ 595

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           R+KGLGEM   QLW TTLNP TR L R+ + DAS A+ +FS LM  +VEPRR+ I
Sbjct: 596 RFKGLGEMMPEQLWSTTLNPKTRVLKRLTVDDASAANHMFSTLMSKDVEPRRKLI 650


>gi|118420998|dbj|BAF37224.1| DNA gyrase subunit B [Marinobacter hydrocarbonoclasticus]
          Length = 475

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 284/477 (59%), Positives = 368/477 (77%), Gaps = 3/477 (0%)

Query: 32  IGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE 91
           IGDTD  +GLHHM++E++DN+IDE+L GY   I + ++ D S TV DNGRGIP DLH+EE
Sbjct: 1   IGDTDDGTGLHHMVFELVDNSIDEALAGYCSEIGIIIHPDESITVKDNGRGIPVDLHEEE 60

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151
           G+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L L I+R+G +YE S+ 
Sbjct: 61  GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSSLTLTIRRDGKVYEQSYT 120

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+ + PL   G   + +GT+V F+PS + F+   F+YD L  RLREL+FLNS V+I L 
Sbjct: 121 HGVPNAPLGEVGET-DASGTKVHFIPSPETFTHIQFHYDILAKRLRELAFLNSGVRIRLT 179

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+RS +       Y+GG+ AFV +L+ +K  + +     +   D I++++AM+WND + E
Sbjct: 180 DERSGKE--EIFEYEGGLRAFVEHLNTNKTAINRVFHFNREREDGIAVEVAMQWNDAFQE 237

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+ CFTNNIPQ+DGGTHL+G R+ALTR + +Y++     KK K +  GDD REG T+++S
Sbjct: 238 NIYCFTNNIPQRDGGTHLAGFRAALTRSLNNYIDHEGLGKKAKVATSGDDAREGLTAIIS 297

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+PDP+FSSQTK+KLVSSEV++ VE  +    + +L+E P EAK IV K+++A+  R+A
Sbjct: 298 VKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSFAEYLQEQPNEAKQIVNKMIEAARAREA 357

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+ARD+TRRKG LDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAIL
Sbjct: 358 ARKARDMTRRKGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKTQAIL 417

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           PL+GKILNVE+ARFDKMLSS E+GTLITALG GIG++ F+ +KLRYH IIIMTDADV
Sbjct: 418 PLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADV 474


>gi|169350467|ref|ZP_02867405.1| hypothetical protein CLOSPI_01235 [Clostridium spiroforme DSM 1552]
 gi|169292787|gb|EDS74920.1| hypothetical protein CLOSPI_01235 [Clostridium spiroforme DSM 1552]
          Length = 642

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 266/596 (44%), Positives = 369/596 (61%), Gaps = 16/596 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             +SYD  +IQIL+GL+AV+KRP MYIG TD   GLHH+++E++DNAIDE+L G+ D I 
Sbjct: 3   AKNSYDESNIQILEGLEAVRKRPGMYIGSTDS-RGLHHLVWEIVDNAIDEALSGFGDNIQ 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGVG 124
           VT+  D S  VSD+GRG+PT +H   G  A EVI+T LHAGGKFN    YK SGGLHGVG
Sbjct: 62  VTICKDNSIIVSDHGRGMPTGMHAS-GRPATEVILTVLHAGGKFNEDGGYKTSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS+WL++ + R+G I++  F N G     L V G   N TGT + FLP + IFS
Sbjct: 121 ASVVNALSTWLEVTVYRDGKIWQQRFENGGSKIGKLKVVGKT-NKTGTTIHFLPDASIFS 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             ++N+ T+  RL E +FL   ++I L D+RS +   +   Y  G+ AFV YL+  K  L
Sbjct: 180 TTEYNFSTISERLMESAFLLKGIRIDLKDERSDKE--VVYQYDNGLIAFVEYLNYEKDVL 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I I+G  + I +DLAM++  GY EN L F N +   DGG+H +G RSALTR    Y
Sbjct: 238 NP-IISIEGINNEIEVDLAMQFTSGYQENTLSFVNLVRTSDGGSHETGFRSALTRTFNEY 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVN 361
             K    K+  +++ G+D REG ++++SIK+P+   +F  QTK KL + E R+VV++ V 
Sbjct: 297 ARKYGLLKEKDKNLEGNDVREGLSAIISIKVPEHLLQFEGQTKSKLGTPEARNVVDNIVY 356

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASM-VRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           + LS +LEE+   A +++KK++ A+     A +      + KG      L GKLA    +
Sbjct: 357 EKLSFYLEENKQIADVLIKKMIKAAQVRDAARKAREAARKGKGTRQEKILSGKLAPAQSK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D K+ EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A    +L ++EI T+I  
Sbjct: 417 DKKRKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVINTEKAAMSDILKNEEIATIINT 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G D F+     Y+K+IIMTDAD DGAHI+TLLLTFF+R M  LI  G +YI  PP
Sbjct: 477 IGAGVGAD-FNEKDSNYNKVIIMTDADTDGAHIQTLLLTFFYRYMKGLITAGKVYIALPP 535

Query: 541 LYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           LY I++         Y   ++ LED          ++ +     + +       ++
Sbjct: 536 LYKISKKNGKKEEAIYAWQDDELEDAKKKIGKGYVVQRYKGLGEMNASQLWETTMN 591



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E     ++    ++A  +N I       ++   +N + ++           +    
Sbjct: 453 VINTEKAAMSDILKNEEIATIINTIGAGVGADFNEKDSNYNKVIIMTDADTDGAHIQTLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI---FSIGRK----G 733
             F +      I + ++      +  +     K +     ++           +K    G
Sbjct: 513 LTFFYRYMKGLITAGKVYIALPPLYKISKKNGKKE----EAIYAWQDDELEDAKKKIGKG 568

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
             +QRYKGLGEMNASQLWETT+NP+TR+L++V I DA+  +   S LMGD+VEPRRE+I+
Sbjct: 569 YVVQRYKGLGEMNASQLWETTMNPETRTLIQVSIDDAALVERRVSVLMGDKVEPRREWIE 628

Query: 794 EN 795
           +N
Sbjct: 629 QN 630


>gi|42519096|ref|NP_965026.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii NCC 533]
 gi|41583383|gb|AAS08992.1| topoisomerase IV subunit B [Lactobacillus johnsonii NCC 533]
          Length = 652

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 271/601 (45%), Positives = 373/601 (62%), Gaps = 14/601 (2%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+  N   SSYD  SIQIL GL+AV+KRP MYIG TD   GL+H+IYE++DN++DE++ G
Sbjct: 1   MAKANKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNHLIYEIVDNSVDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT++ D S TV D GRG+PT +H E GI   EVI+T LHAGGKF +K+Y+ SGG
Sbjct: 60  YGKEINVTIHKDNSVTVQDFGRGMPTGMH-ESGIPTIEVILTVLHAGGKFTEKNYQTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSS+LK+R+ R+G  YE  F N G     L   G   +  GT +TF P 
Sbjct: 119 LHGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS   +NY+T+Q R+RE +FL   V+ +L D+R PE  +    Y+ GI++FVSYL+ 
Sbjct: 179 PTIFSTTTYNYETIQERIRESAFLLKGVKFTLTDEREPEHHDE-FLYEDGIKSFVSYLNE 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             K  M       G ++ I ++ + ++NDGY EN + F NN+   DGG+H +G RS  T+
Sbjct: 238 D-KDTMGDVFYFSGKQNGIEVEFSGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTK 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV
Sbjct: 297 AFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVV 356

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLA 415
           +S V + LS +L E+   A+ +V+K   A   R+AA++ARD +R  K       L GKL 
Sbjct: 357 DSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   +  ++EI 
Sbjct: 417 PAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  ++  G +Y
Sbjct: 477 TMIHTIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVY 535

Query: 536 IIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY + +G      ++Y   +E L +   +      ++ F     + +       +
Sbjct: 536 IALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTM 595

Query: 592 D 592
           +
Sbjct: 596 N 596



 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%)

Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + +    +   KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA  A+   + L
Sbjct: 561 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 620

Query: 781 MGDEVEPRREFIQEN 795
           MGD+V PRR++I EN
Sbjct: 621 MGDKVAPRRKWIDEN 635


>gi|325956844|ref|YP_004292256.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus 30SC]
 gi|325333409|gb|ADZ07317.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus 30SC]
          Length = 648

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/605 (43%), Positives = 372/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 3   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 62  VTIHKDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F N G     L   G   + TGT +TF P   IFS 
Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE SFL   V+  L D+R PE       Y  GI++FVSYL+   K  +
Sbjct: 181 TKYKYETIQERIRESSFLLKGVKFVLTDEREPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ A +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 239 SDVFYFEGKQDGMEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V +
Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPL
Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKVYIALPPL 537

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y +     +   +QY   +E L +          ++ F     + ++   +  +D   ++
Sbjct: 538 YRLQKGRGKKSKIQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMDPESRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  143 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I   ++      +  L    G K KI        L +    +GR G S+
Sbjct: 514 LTFFYRYMRPMIEKGKVYIALPPLYRLQKGRGKKSKIQYAWTDEELAEDEKKMGR-GYSL 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QR+KGLGEMNA QLW+TT++P++R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 573 QRFKGLGEMNAEQLWQTTMDPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631


>gi|116618459|ref|YP_818830.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097306|gb|ABJ62457.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 687

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 265/666 (39%), Positives = 378/666 (56%), Gaps = 18/666 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + + YD+DSI+IL+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY + I 
Sbjct: 3   EKNHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGYGNEIR 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ + + TV D GRG+P  +H E G    EVI+T LHAGGKF Q  Y  SGGLHGVG 
Sbjct: 62  VTIHDNNAITVQDFGRGMPIGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALS  L + I REG+ ++  F+N G     L   G     TGT VTF P + IFS 
Sbjct: 121 SVVNALSESLTVTIVREGHKWQEEFVNGGNPVGTLRDLGKTKEPTGTTVTFKPDATIFSA 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + +D L  RLRE SFL S V+ +L D+R    R     Y+ G+EAFV +L+  K+ + 
Sbjct: 181 TVYKFDILAERLRESSFLMSGVKFTLTDERVDPVRVEEYHYEKGLEAFVGFLNEDKETIG 240

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              +  +G +++I +D+A ++NDGY E +L F NN+  +DGGTH  G R+A T+    Y 
Sbjct: 241 P-VMTFEGEQESIVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKAFNEYA 299

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
            K    K   +++ G D REG ++V+S+++P+   +F  QTK+KL + E R +V+S VN+
Sbjct: 300 RKVNLLKDKDKNLEGTDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGIVDSVVNE 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLADCSER 420
            L  +L E+    + +++K L A   R+AARRA     T +        L GKLA    +
Sbjct: 360 TLGRFLMENGDFGQNLIRKALRAREAREAARRARDESRTGKTKGAKDRLLSGKLAPAQSK 419

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +  K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI TLI A
Sbjct: 420 NADKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEISTLIYA 479

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G   F +    ++KIIIMTDAD DGAHI+TLLLTFF++ M  LI  G +YI  PP
Sbjct: 480 IGGGVG-TDFKVEDASFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVYIALPP 538

Query: 541 LYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           LY +    +    Q+    + LE          E+  F           +   +     +
Sbjct: 539 LYRVKYSSKKIEDQFAWTNDELESITSQSDARYELTRFKGLGE------MNAPLLWETTM 592

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
           D   +          +           +        + + +   L+      +       
Sbjct: 593 DPESRTLIRVKIDDAVLAEKRVTTLMGDKVDPRREWIEANVHFTLDEAGSILDTVDGDDT 652

Query: 658 NNSDIL 663
            +SD+ 
Sbjct: 653 KSSDVF 658



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSLLDTIFSIGRKGISM 736
            + +F  KY R                       KI          L++I S       +
Sbjct: 514 LLLTFFYKYMRPLIEAGRVYIALPPLYRVKYSSKKIEDQFAWTNDELESITSQSDARYEL 573

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
            R+KGLGEMNA  LWETT++P++R+L+RVKI DA  A+   + LMGD+V+PRRE+I+ N
Sbjct: 574 TRFKGLGEMNAPLLWETTMDPESRTLIRVKIDDAVLAEKRVTTLMGDKVDPRREWIEAN 632


>gi|259046724|ref|ZP_05737125.1| DNA topoisomerase IV, B subunit [Granulicatella adiacens ATCC
           49175]
 gi|259036620|gb|EEW37875.1| DNA topoisomerase IV, B subunit [Granulicatella adiacens ATCC
           49175]
          Length = 686

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 259/597 (43%), Positives = 367/597 (61%), Gaps = 16/597 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     + Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH+ YE++DNA+DE+L GY
Sbjct: 1   MSK--VTNQYNDDAIQVLEGLEAVRKRPGMYIGSTD-HRGLHHLAYEIVDNAVDEALSGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VT++ D S +V DNGRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGL
Sbjct: 58  ATKIEVTIHKDQSLSVKDNGRGMPTGKHAS-GIPTIQVIFTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + + R+G +Y+ SF N G     +    ++   +GT VTFLPS 
Sbjct: 117 HGVGASVVNALSDWLTVEVLRDGTLYKQSFKNGGEPVGTVKKEKTSRRGSGTTVTFLPSD 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             FS  +++Y+TL  RLRE +FL   + I L D+R+ E    T  Y+ GI  F+ YL+  
Sbjct: 177 KTFSTTNWSYETLAERLRESAFLLKGLTIVLTDERTGES--ETFHYEEGIRDFIQYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L         + D +  + A ++NDGY E +L F NN+  KDGGTH  G++SALT+ 
Sbjct: 235 KDTLSPVVD-FDSTVDGVETEFAFQYNDGYSETILSFVNNVRTKDGGTHEVGMKSALTKA 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG T+++S+++P+   +F  QTK+KL +   R +V+
Sbjct: 294 FNEYARKVGLLKEKDKNLEGSDVREGLTAIISLRIPEEILQFEGQTKDKLGTPAARGIVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + +++ L  +L E+   A+ +++K + A   R+A+R+AR+     +KG      L GKL 
Sbjct: 354 NTISEQLGFFLTENGEIAQELIRKAIKAREAREASRKAREESRNGKKGKKKETLLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A    +L ++EI 
Sbjct: 414 PAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKASISDILKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G D F I    Y KI+IMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 474 TIIYTIGAGVGSD-FKIEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 532

Query: 536 IIKPPLYGITRGKSLQYVKDE---ESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +  PPLY I++G   + V +    E   +          +       G ++ + L +
Sbjct: 533 LALPPLYKISKGTGKKQVIEYAWTEKELEEKTKLVGKGYLLQRYKGLGEMNADQLWD 589



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 3/263 (1%)

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +  +    + +  +    +   E     +   +E  L        SKN  +N +    
Sbjct: 370 IAQELIRKAIKAREAREASRKAREESRNGKKGKKKETLLSGKLTPAQSKNPKKNELYLVE 429

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
                         K      +   V N E     ++    ++   +  I       +  
Sbjct: 430 GDSAGGSAKQGRDRKFQAILPLRGKVINTEKASISDILKNEEINTIIYTIGAGVGSDFKI 489

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
              N D +V           +      F +      I + ++      +  +     K +
Sbjct: 490 EDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYLALPPLYKISKGTGKKQ 549

Query: 716 I---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           +         L+    +  KG  +QRYKGLGEMNA QLW+TT+NPDTR+L+RV I D +Q
Sbjct: 550 VIEYAWTEKELEEKTKLVGKGYLLQRYKGLGEMNADQLWDTTMNPDTRTLIRVVIDDKAQ 609

Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795
           A+   S LMG++VEPRR++I+ +
Sbjct: 610 AERRVSTLMGNKVEPRRKWIERH 632


>gi|315038433|ref|YP_004032001.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1112]
 gi|312276566|gb|ADQ59206.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1112]
          Length = 648

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/605 (43%), Positives = 372/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 3   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 62  VTIHKDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F N G     L   G   + TGT +TF P   IFS 
Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R PE       Y  GI++FVSYL+   K  +
Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDEREPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ A +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 239 SDVFYFEGKQDGMEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V +
Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPL
Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKVYIALPPL 537

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y +     +   +QY   +E L +          ++ F     + ++   +  +D   ++
Sbjct: 538 YRLQKGRGKKSKIQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMDPESRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  143 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I   ++      +  L    G K KI        L +    +GR G S+
Sbjct: 514 LTFFYRYMRPMIEKGKVYIALPPLYRLQKGRGKKSKIQYAWTDEELAEDEKKMGR-GYSL 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QR+KGLGEMNA QLW+TT++P++R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 573 QRFKGLGEMNAEQLWQTTMDPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631


>gi|229829024|ref|ZP_04455093.1| hypothetical protein GCWU000342_01109 [Shuttleworthia satelles DSM
           14600]
 gi|229792187|gb|EEP28301.1| hypothetical protein GCWU000342_01109 [Shuttleworthia satelles DSM
           14600]
          Length = 640

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/621 (39%), Positives = 353/621 (56%), Gaps = 14/621 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  SYD  SI +L+GLDAV+ RP MYIG T    GL+H+IYE++DN++DE L G  D I 
Sbjct: 3   KKKSYDESSIHVLEGLDAVRMRPGMYIGSTS-TKGLNHLIYEIVDNSVDEHLAGDCDTIH 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V+LN+DGSCTV D+GRGIP  +H + G+SAA ++ + LHAGGKF+ ++YK SGGLHGVG 
Sbjct: 62  VSLNLDGSCTVEDDGRGIPVGMHAK-GVSAARLVFSTLHAGGKFDNEAYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSSD 180
           SVVNALSS++ + I+R+G I+   +  G          L V G    +TGT++TFLP   
Sbjct: 121 SVVNALSSYMDIEIRRDGEIHHDHYAMGKPTEKLVNGLLPVIGKTK-ETGTKITFLPDPQ 179

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F+   ++ RL E ++LN  + I   D R      +    K GI  FV  L++  
Sbjct: 180 IFEKTRFSEKDVKSRLHETAYLNPRLTIIYDDLRQETAEHLVFHEKEGIRGFVRELNKKA 239

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +  +   I  +G  + I ++ A ++ + +HEN+L F NNI   +GG H++G ++  T  I
Sbjct: 240 E-GLTDVIYYKGEFEGIQVEAAFQYVNEFHENILGFCNNIYNAEGGEHITGFKTQFTTVI 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY  +    K    +  G D R G T+V+SIK PDPRF  QTK KL + +         
Sbjct: 299 NSYARELGILKDKDANFTGTDVRNGMTAVISIKHPDPRFEGQTKTKLDNKDASKATAKVT 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D +  + + +    K ++     A+ +R    R +     K         GKLA+C  R
Sbjct: 359 GDEIVLYFDRNLETLKTVISCAEKAAKIRRTEERTKTNLLTKQKFSFD-QNGKLANCESR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  K E+F+VEGDSAGGSAK  R+R  QAI+P+RGKILNVE+A  DK+L++ EI T+I A
Sbjct: 418 DASKCEIFIVEGDSAGGSAKMARNRLYQAIMPIRGKILNVEKASIDKVLANAEIKTMINA 477

Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            G G  +   + FDI KLRY KII+MTDADVDGAHI TLLLT F+R MP LI+ G +Y+ 
Sbjct: 478 FGCGFSEGFGNDFDIKKLRYDKIIVMTDADVDGAHIDTLLLTLFYRFMPELIYEGHVYLA 537

Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            PPLY         +Y+ D+ +LE Y   Q+ S  ++ +     + +       ++   +
Sbjct: 538 MPPLYKAMPAKGEEEYLYDDAALEKYRKRQTGSFTLQRYKGLGEMDAAQLYETTMNPKTR 597

Query: 597 IDKLIKDFYPNHDKTFIEQAV 617
             + +            E  +
Sbjct: 598 RLRRVGIEDGRMASDVTEMLM 618



 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A+QL+ETT+NP TR L RV I D   A D+   LMG+EV PRR+FI E
Sbjct: 572 TLQRYKGLGEMDAAQLYETTMNPKTRRLRRVGIEDGRMASDVTEMLMGNEVGPRRDFIYE 631

Query: 795 NSLPSALDI 803
           N+  + LD+
Sbjct: 632 NANDADLDV 640


>gi|227431865|ref|ZP_03913889.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352407|gb|EEJ42609.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 687

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 265/666 (39%), Positives = 378/666 (56%), Gaps = 18/666 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + + YD+DSI+IL+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY + I 
Sbjct: 3   EKNHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGYGNEIR 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ + + TV D GRG+P  +H E G    EVI+T LHAGGKF Q  Y  SGGLHGVG 
Sbjct: 62  VTIHDNNAITVQDFGRGMPIGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALS  L + I REG+ ++  F+N G     L   G     TGT VTF P + IFS 
Sbjct: 121 SVVNALSESLTVTIVREGHKWQEEFVNGGNPVGTLRDLGKTKEPTGTTVTFKPDATIFSA 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + +D L  RLRE SFL S V+ +L D+R    R     Y+ G+EAFV +L+  K+ + 
Sbjct: 181 TVYKFDILAERLRESSFLMSGVKFTLTDERVDPVRVEEYHYEKGLEAFVGFLNEDKETIG 240

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              +  +G +++I +D+A ++NDGY E +L F NN+  +DGGTH  G R+A T+    Y 
Sbjct: 241 P-VMTFEGEQESIVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKAFNEYA 299

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
            K    K   +++ G D REG ++V+S+++P+   +F  QTK+KL + E R +V+S VN+
Sbjct: 300 RKVNLLKDKDKNLEGTDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGIVDSVVNE 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLADCSER 420
            L  +L E+    + +++K L A   R+AARRA     T +        L GKLA    +
Sbjct: 360 TLGRFLMENGDFGQNLIRKALRAREAREAARRARDESRTGKTKGAKDRLLSGKLAPAQSK 419

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +  K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI TLI A
Sbjct: 420 NADKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEISTLIYA 479

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G   F +    ++KIIIMTDAD DGAHI+TLLLTFF++ M  LI  G +YI  PP
Sbjct: 480 IGGGVG-TDFKVEDASFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVYIALPP 538

Query: 541 LYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           LY +    +    Q+    + LE          E+  F           +   +     +
Sbjct: 539 LYRVKYSSKKIEDQFAWTNDELESITSQSDARYELTRFKGLGE------MNAPLLWETTM 592

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
           D   +          +           +        + + +   L+      +       
Sbjct: 593 DPESRTLIRIKIDDAVLAEKRVTTLMGDKVDPRREWIEANVHFTLDEAGSILDTVDGDDT 652

Query: 658 NNSDIL 663
            +SD+ 
Sbjct: 653 KSSDVF 658



 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSLLDTIFSIGRKGISM 736
            + +F  KY R                       KI          L++I S       +
Sbjct: 514 LLLTFFYKYMRPLIEAGRVYIALPPLYRVKYSSKKIEDQFAWTNDELESITSQSDARYEL 573

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
            R+KGLGEMNA  LWETT++P++R+L+R+KI DA  A+   + LMGD+V+PRRE+I+ N
Sbjct: 574 TRFKGLGEMNAPLLWETTMDPESRTLIRIKIDDAVLAEKRVTTLMGDKVDPRREWIEAN 632


>gi|297193291|ref|ZP_06910689.1| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151724|gb|EDY62302.2| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486]
          Length = 688

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 278/647 (42%), Positives = 390/647 (60%), Gaps = 26/647 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD I V
Sbjct: 30  TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADTIDV 88

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +H  E   A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 89  TILADGGVRVIDNGRGIPVGIHPVEKRPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 148

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L + I+ +G  +   + +G+   PL     A  +TGT VTF    DIF   +
Sbjct: 149 VVNALSYKLAVEIRTDGYRWTQEYKSGVPTAPLEQ-HEATTETGTSVTFWADGDIFETTE 207

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR------------------SPEPREITMFYKGG 228
           ++++TL  R +E++FLN  + ++L D+R                      R +   Y+GG
Sbjct: 208 YSFETLSRRFQEMAFLNKGLTLTLTDERESAKATAGAETGQEPEDLEQPARTVKYHYEGG 267

Query: 229 IEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           I  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I   +G
Sbjct: 268 IVDFVKYLNSRKGELIHPTVIDIEAEDRERMLSVEIAMQWNSQYTEGVYSFANTIHTHEG 327

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y  +    ++   ++ G+D REG T+++S+K+ +P+F  QTK 
Sbjct: 328 GTHEEGFRSALTGLVNRYAREKKLLREKDDNLSGEDIREGLTAIISVKLGEPQFEGQTKT 387

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++E ++ V+  V++ L+ W + +P EA  I++K + A   R AAR+ARDLTRRKG+L
Sbjct: 388 KLGNTEAKTFVQKVVHETLTDWFDRNPNEAADIIRKGIQAQTARVAARKARDLTRRKGLL 447

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           + ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE+AR 
Sbjct: 448 ESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARI 507

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M
Sbjct: 508 DKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFM 566

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
             L+  G +++ +PPLY I  G+        +   D L++        +  DS       
Sbjct: 567 RPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVDLGKRSGKRIKEDSIQRFKG- 625

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
            L     + L+I  + +D       T  + A    +F+    +++  
Sbjct: 626 -LGEMNAEELRITTMDQDHRVLGQVTLDDAAQADDLFSVLMGEDVEA 671



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +G++        S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 602 DALVDLGKRSGKRIKEDSIQRFKGLGEMNAEELRITTMDQDHRVLGQVTLDDAAQADDLF 661

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 662 SVLMGEDVEARRSFIQRNAKDVRFLDI 688


>gi|259500773|ref|ZP_05743675.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners
           DSM 13335]
 gi|302190776|ref|ZP_07267030.1| DNA gyrase, B subunit [Lactobacillus iners AB-1]
 gi|309804063|ref|ZP_07698144.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 11V1-d]
 gi|309805911|ref|ZP_07699943.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 03V1-b]
 gi|309807813|ref|ZP_07701745.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 01V1-a]
 gi|312871188|ref|ZP_07731286.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|312873296|ref|ZP_07733351.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|315654135|ref|ZP_07907051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners
           ATCC 55195]
 gi|325912201|ref|ZP_08174598.1| DNA gyrase, B subunit [Lactobacillus iners UPII 143-D]
 gi|325913628|ref|ZP_08175990.1| DNA gyrase, B subunit [Lactobacillus iners UPII 60-B]
 gi|329919730|ref|ZP_08276681.1| DNA gyrase, B subunit [Lactobacillus iners SPIN 1401G]
 gi|259167467|gb|EEW51962.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners
           DSM 13335]
 gi|308163831|gb|EFO66097.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308167687|gb|EFO69834.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 03V1-b]
 gi|308168915|gb|EFO71001.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 01V1-a]
 gi|311091176|gb|EFQ49565.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311093202|gb|EFQ51548.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|315488831|gb|EFU78477.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners
           ATCC 55195]
 gi|325475860|gb|EGC79029.1| DNA gyrase, B subunit [Lactobacillus iners UPII 143-D]
 gi|325476987|gb|EGC80137.1| DNA gyrase, B subunit [Lactobacillus iners UPII 60-B]
 gi|328937077|gb|EGG33505.1| DNA gyrase, B subunit [Lactobacillus iners SPIN 1401G]
          Length = 653

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 284/589 (48%), Positives = 395/589 (67%), Gaps = 5/589 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG+T    GLHH+++E++DN+IDE L G+A  
Sbjct: 15  EKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTS-IQGLHHLVWEIIDNSIDEKLAGFATK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+ K+ G SA E + T LHAGGKF    YKVSGGLHGV
Sbjct: 74  IEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y + F +G ++  +   G       GT V F P  DIF
Sbjct: 134 GASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPDPDIF 193

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +      D  L++R+REL+FLN  ++++  DKR     +    ++GGI+ +VS+L++ ++
Sbjct: 194 TETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKNTAEKDIYHFEGGIKEYVSFLNQKEQ 253

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L + P+ ++G  D I+++ ++++  GY   +L F NNI   +GG H SG ++ALTR + 
Sbjct: 254 VLFEPPVYVEGDYDGINVEASLQYITGYKSTLLTFANNIHTYEGGMHESGFKTALTRVVN 313

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K +  ++ G+D REG T+V+SIK P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 314 DYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFS 373

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S +L E+P   + IV+K   A+  R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 374 DTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIANLPGKLADNTSND 433

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PK SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI T+ TAL
Sbjct: 434 PKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTIFTAL 493

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FDINK RYHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPL
Sbjct: 494 GTGFGAD-FDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYVYIARPPL 552

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y + +GK ++Y+  +E L DYL     S + I       G +    L  
Sbjct: 553 YQVRQGKVIKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLWE 601



 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV   DA  A++ F  LMG+EV PRREFI++N
Sbjct: 585 VQRYKGLGEMDPEQLWETTMNPENRRLDRVDPEDAEDAEEAFEMLMGNEVGPRREFIEQN 644

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 645 AKYVENLD 652


>gi|297833810|ref|XP_002884787.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330627|gb|EFH61046.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 267/600 (44%), Positives = 370/600 (61%), Gaps = 15/600 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  +  Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  G+A 
Sbjct: 6   ESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGFAS 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120
            I V L+ D S ++SDNGRGIPTDLH   G SA E ++T LHAGGKF  KS  Y VSGGL
Sbjct: 65  KIDVVLHSDDSVSISDNGRGIPTDLHPATGKSALETVLTVLHAGGKFGGKSSGYSVSGGL 124

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ ++R+G  ++  +  G     L        +    GT + F P
Sbjct: 125 HGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWP 184

Query: 178 SSD----IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEA 231
             +      +   F+++T+  R+REL+FLN  V ISL  +     R      FY GG+  
Sbjct: 185 DKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDLYSEYFYAGGLTE 244

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +VS+L+  KKPL       +   +  ++D++++W  D Y + +L + N+I   DGGTH+ 
Sbjct: 245 YVSWLNTDKKPLHDVLG-FRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIE 303

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G++++LTR + S  +K    K+   S+ G+  REG T ++S+K+P+P F  QTK +L + 
Sbjct: 304 GVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNP 363

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR +V+  V + L+ +LE HP   + I+ K L+A     AA+RAR+L R K VL  +SL
Sbjct: 364 EVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSL 423

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS  DP +SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  
Sbjct: 424 PGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYK 483

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++EI  LI  LG G+  + F+   LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L  
Sbjct: 484 NEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFD 543

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            G +Y+  PPL+ + RGK   Y  D+ +L+    +   +           G +    L  
Sbjct: 544 AGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPANASYNIQRFKGLGEMMPAQLWE 603



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 119/340 (35%), Gaps = 38/340 (11%)

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556
           K+I   D  + G H+R  L      ++P+    G        P +  I      +Y+ + 
Sbjct: 321 KVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEY 380

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI----------------------DDA 594
             L   ++   +S+ +  +  +       +L                           + 
Sbjct: 381 LELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEI 440

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKS 649
             ++           +    QA++       + +  + +   K     N I       K 
Sbjct: 441 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKG 500

Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           E     ++    I++      V    +      F F  +     +  I      +  +  
Sbjct: 501 EDFNKENLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVER 559

Query: 710 NGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                      + L  I +        ++QR+KGLGEM  +QLWETT+NPDTR L ++ +
Sbjct: 560 GKQAHYCYD-DAALKKITASFPANASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVV 618

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS----LPSALDI 803
            DA++ + +FS LMG  V+ R+E I+  +    L   LDI
Sbjct: 619 EDAAETNMVFSSLMGARVDVRKELIKSAATRMNLE-NLDI 657


>gi|312872743|ref|ZP_07732808.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091785|gb|EFQ50164.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 653

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 284/589 (48%), Positives = 395/589 (67%), Gaps = 5/589 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG+T    GLHH+++E++DN+IDE L G+A  
Sbjct: 15  EKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTS-IQGLHHLVWEIIDNSIDEKLAGFATK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+ K+ G SA E + T LHAGGKF    YKVSGGLHGV
Sbjct: 74  IEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y + F +G ++  +   G       GT V F P  DIF
Sbjct: 134 GASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPDPDIF 193

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +      D  L++R+REL+FLN  ++++  DKR     +    ++GGI+ +VS+L++ ++
Sbjct: 194 TETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKNTAEKDIYHFEGGIKEYVSFLNQKEQ 253

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L + P+ ++G  D I+++ ++++  GY   +L F NNI   +GG H SG ++ALTR + 
Sbjct: 254 VLFEPPVYVEGDYDGINVEASLQYITGYKSTLLTFANNIHTYEGGMHESGFKAALTRVVN 313

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K +  ++ G+D REG T+V+SIK P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 314 DYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFS 373

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S +L E+P   + IV+K   A+  R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 374 DTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIANLPGKLADNTSND 433

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PK SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI T+ TAL
Sbjct: 434 PKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTIFTAL 493

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FDINK RYHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPL
Sbjct: 494 GTGFGAD-FDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYVYIARPPL 552

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y + +GK ++Y+  +E L DYL     S + I       G +    L  
Sbjct: 553 YQVRQGKIIKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLWE 601



 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV   DA  A++ F  LMG+EV PRREFI++N
Sbjct: 585 VQRYKGLGEMDPEQLWETTMNPENRRLDRVDPEDAEDAEEAFEMLMGNEVGPRREFIEQN 644

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 645 AKYVENLD 652


>gi|312874887|ref|ZP_07734906.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089632|gb|EFQ48057.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 653

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 284/589 (48%), Positives = 395/589 (67%), Gaps = 5/589 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG+T    GLHH+++E++DN+IDE L G+A  
Sbjct: 15  EKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTS-IQGLHHLVWEIIDNSIDEKLAGFATK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+ K+ G SA E + T LHAGGKF    YKVSGGLHGV
Sbjct: 74  IEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y + F +G ++  +   G       GT V F P  DIF
Sbjct: 134 GASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPDPDIF 193

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +      D  L++R+REL+FLN  ++++  DKR     +    ++GGI+ +VS+L++ ++
Sbjct: 194 TETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKNTAEKDIYHFEGGIKEYVSFLNQKEQ 253

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L + P+ ++G  D I+++ ++++  GY   +L F NNI   +GG H SG ++ALTR + 
Sbjct: 254 VLFEPPVYVEGDYDGINVEASLQYITGYKSTLLTFANNIHTYEGGMHESGFKTALTRVVN 313

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K +  ++ G+D REG T+V+SIK P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 314 DYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFS 373

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S +L E+P   + IV+K   A+  R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 374 DTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIANLPGKLADNTSND 433

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PK SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI T+ TAL
Sbjct: 434 PKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTIFTAL 493

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTG G D FDINK RYHK+IIMTDADVDGAHIRTLLLT F+R M  +I  G++YI +PPL
Sbjct: 494 GTGFGAD-FDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYVYIARPPL 552

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y + +GK ++Y+  +E L DYL     S + I       G +    L  
Sbjct: 553 YQVRQGKIIKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLWE 601



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV   DA  A++ F  LMG+EV PRREFI++N
Sbjct: 585 VQRYKGLGEMDPEQLWETTMNPENRRLDRVDPEDAEDAEEAFEMLMGNEVGPRREFIEQN 644

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 645 AKYVENLD 652


>gi|327183630|gb|AEA32077.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1118]
          Length = 648

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 264/605 (43%), Positives = 372/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 3   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 62  VTIHKDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F N G     L   G   + TGT +TF P   IFS 
Sbjct: 121 SVVNALSSYMKVRVVRDGKGYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R PE       Y  GI++FVSYL+   K  +
Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDEREPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D I I+ A +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 239 SDVFYFEGKQDGIEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V +
Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPL
Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKVYIALPPL 537

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y +     +   +QY   +E L +          ++ F     + ++   +  +D   ++
Sbjct: 538 YRLQKGRGKKSKIQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMDPESRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I   ++      +  L    G K KI        L +    +GR G S+
Sbjct: 514 LTFFYRYMRPMIEKGKVYIALPPLYRLQKGRGKKSKIQYAWTDEELAEDEKKMGR-GYSL 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QR+KGLGEMNA QLW+TT++P++R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 573 QRFKGLGEMNAEQLWQTTMDPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631


>gi|313897377|ref|ZP_07830920.1| DNA topoisomerase IV, B subunit [Clostridium sp. HGF2]
 gi|312957747|gb|EFR39372.1| DNA topoisomerase IV, B subunit [Clostridium sp. HGF2]
          Length = 643

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/593 (41%), Positives = 360/593 (60%), Gaps = 11/593 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD  SIQIL GLDAV+KRP MYIG TD   GLHH+++E++DN+IDE+L G+ D I
Sbjct: 1   MAENAYDGSSIQILDGLDAVRKRPGMYIGSTDS-RGLHHLVWEIVDNSIDEALNGHGDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGV 123
            +T+  D    V D GRG+P D+H   G+   +VI T LHAGGKF+ +  YK SGGLHGV
Sbjct: 60  RITIEKDNVICVEDEGRGMPVDMHAS-GVPTVQVIYTVLHAGGKFSTEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS W+++ + R+G IY MSF + G   + L V G   N TG++V F     +F
Sbjct: 119 GASVVNALSEWVEVTVHRDGKIYRMSFSDGGREVSKLEVIGKT-NKTGSKVRFKADKTMF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   +++  +  R +E +FL   +++ + D+R  + RE    Y+ G+ AF+ YL   K+ 
Sbjct: 178 STTKYSFHQIAERAQEDAFLLEGLKLVVRDEREGKEREEVYHYEQGLVAFMEYLHEDKQV 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
             +      G  + I +D A ++ D Y EN+  F N +  KDGGTH +G ++A T+    
Sbjct: 238 FHKPVA-FSGMSNEIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNAFTKVFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K+   K+  ++  G D REG T +LS+ +P+   +F  QTK KL ++E ++ V+S V
Sbjct: 297 YARKNGLLKEKDKNFEGSDVREGLTIILSLGVPENLLQFEGQTKGKLGTAEAKAAVDSIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
           ++ LS +LEE+   A  ++KK+  AS  R+AAR+AR+  R  +        L GKLA   
Sbjct: 357 SEKLSFFLEENKELAITLIKKMQRASTAREAARKAREDARKGKTRGKTEKILSGKLASAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D +K EL+LVEGDSAGGSAKQGR  + QAILPLRGK+LN E+A    +  ++E+ T+I
Sbjct: 417 SKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKNEELNTII 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG G+G + F      YHK+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 477 HALGAGVGAN-FHAEDSNYHKVIIMTDADTDGAHIQILLLTFFYRYMRELIEQGMVYIAL 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           PPLY + +GK +QY   +E L++          ++ +     + +       +
Sbjct: 536 PPLYKLQKGKEIQYAWTDEELDELRKTFPKGFSLQRYKGLGEMNADQLWDTTM 588



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 103/261 (39%), Gaps = 3/261 (1%)

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +    +  + R  + +    +   +          E  L        SK+  +  +    
Sbjct: 370 LAITLIKKMQRASTAREAARKAREDARKGKTRGKTEKILSGKLASAQSKDARKKELYLVE 429

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
                         K      +   V N E     N+    +L   ++ +      ++H 
Sbjct: 430 GDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKNEELNTIIHALGAGVGANFHA 489

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKI 714
             +N   ++           +     + +F  +Y R    + +    L  L  +  G +I
Sbjct: 490 EDSNYHKVIIMTDADTDGAHI--QILLLTFFYRYMRELIEQGMVYIALPPLYKLQKGKEI 547

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +       LD +     KG S+QRYKGLGEMNA QLW+TT+ P+TR+L++V I DA  A+
Sbjct: 548 QYAWTDEELDELRKTFPKGFSLQRYKGLGEMNADQLWDTTMCPETRTLIQVTIDDAVVAE 607

Query: 775 DLFSRLMGDEVEPRREFIQEN 795
              S LMGD+   RR++I+EN
Sbjct: 608 KRVSVLMGDKANLRRDWIEEN 628


>gi|30088962|gb|AAP13529.1| DNA gyrase subunit B [Acholeplasma pleciae]
          Length = 536

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 264/537 (49%), Positives = 360/537 (67%), Gaps = 5/537 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           GE GLHH+++E++DN+IDE+L GYAD IT+ +       V+DNGRGIP D H + G  A 
Sbjct: 3   GERGLHHLVWEIVDNSIDEALGGYADEITIEILKGEIIRVTDNGRGIPVDTHPKTGRPAV 62

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W  + I ++G IYE  +  GI  
Sbjct: 63  ETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEWFVVEIHKDGVIYEQKYERGIPA 122

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L   G   + +GT ++F     IF     +NY+TL+ R+++L+FLN  ++++LID R 
Sbjct: 123 YDLKTLG-TTDRSGTVISFQSDPLIFKETVIYNYETLRTRIQQLAFLNKGLKLNLIDDRF 181

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            E +  +  Y+GGI  +V +L++ K  +    I I+  +D+I+I+LA+++ D Y  N+  
Sbjct: 182 EEVKTESFHYEGGIIEYVKFLNQAKTRIHPDIIYIEKEQDDITIELALQFVDSYSPNLHS 241

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNI   +GG H  G + ALTR I+ Y ++         S+ G+D REG T+++S+K P
Sbjct: 242 FTNNISTTEGGMHEDGFKMALTRVISKYADELKMK--KDDSISGEDTREGLTAIISVKHP 299

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL + EVR++     ++ L  +L E+P +AK IV+KVL A+  R AAR+A
Sbjct: 300 EPQFEGQTKTKLGNPEVRAITSQITSEALERFLMENPAQAKAIVEKVLLATRARVAARKA 359

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DLTRRK  LD      KLADC  +DP+KSE+++VEGDSAGGSAKQGR  E QAI+PLRG
Sbjct: 360 KDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRG 419

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNVE+AR DKMLS++EI  LI A+GTGI  D FDI K RYHKI+IMTDADVDGAHIRT
Sbjct: 420 KVLNVEKARLDKMLSNKEIVNLIQAMGTGI-SDEFDITKARYHKIVIMTDADVDGAHIRT 478

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           LLLTF FR M  LI  G++Y  +PPLY ++ G++ +Y   E+ L   L        I
Sbjct: 479 LLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNSEYAYTEQELNIILKKIETKPNI 535


>gi|325106678|ref|YP_004267746.1| DNA topoisomerase IV subunit B [Planctomyces brasiliensis DSM 5305]
 gi|324966946|gb|ADY57724.1| DNA topoisomerase IV subunit B [Planctomyces brasiliensis DSM 5305]
          Length = 639

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 242/644 (37%), Positives = 361/644 (56%), Gaps = 25/644 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y A  I++L+GL+AV++RPSMYIG  D   GLHH+++EV+DN++DE L G+
Sbjct: 1   MATASPTK-YSASDIEVLEGLEAVRRRPSMYIGGVD-VRGLHHLLWEVVDNSVDEFLAGH 58

Query: 61  ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           AD I +TL+ DGS  TV+DNGRGIP D H +   SA EVI+T LHAGGKF+ K+Y  SGG
Sbjct: 59  ADTIKITLHKDGSSLTVADNGRGIPVDKHPKFKKSALEVILTTLHAGGKFSDKNYARSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS  +   + R+G+ +   +  G    P+          GT + F P  
Sbjct: 119 LHGVGSSVVNALSEEMVATVHRDGHEWMQRYKRGKATTPVKKVKPFK-GHGTVIFFRPDE 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    F+ DT++  L ++ ++++ ++I   D+   E  E+               D  
Sbjct: 178 EIFRKTTFSSDTIRQHLEDICYIHAGLKIRYTDEVKNETFELHQPDGIKAYVEKLTRDEK 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KKP+ ++    +    +I  +  +RW +   E++  + N I    GGTHL+G+RS + + 
Sbjct: 238 KKPVHETIFTAEKDDGDIKTEFVLRWTEATDEHIRSYVNGIRTHAGGTHLNGIRSGIAKA 297

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y++     K    ++  DD REG   V+S+ + DP F  QTKEKL + EV + VE  
Sbjct: 298 VKNYMDVH-DIKPKGVTISADDIREGCLGVVSVFLGDPMFQGQTKEKLNNPEVTAAVEGL 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV-LDIASLPGKLADCS 418
           +  GL  WL  +   A  I+ +++ A+  R A+R A    +RK       +LPGKL DC 
Sbjct: 357 IRPGLETWLNNNSSIADAILGRIILAARARQASRDAVASIKRKTPGGKRTNLPGKLLDCR 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
             +P ++ELF+VEGDSAGG+A  GR    QAILPLRGK+LN E  + +K +++QE+  L+
Sbjct: 417 SNNPDETELFIVEGDSAGGTAASGRDSRIQAILPLRGKVLNTESIKINKAMANQELSDLV 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             LGTGIG  SFD +KLRY +II++ DAD DG HI TLLLTFFFR MP LI +  L+I +
Sbjct: 477 ETLGTGIG-PSFDAHKLRYGRIILLMDADADGYHISTLLLTFFFRHMPDLIRSEKLFIGQ 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK------------------G 580
           PPLY IT G   QY  D+   E+ L +   + ++E+                        
Sbjct: 536 PPLYRITYGNQSQYALDDLHKEEILASIPANRKVEISRFKGLGEMNASQLRETTLDPTQR 595

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
           V+ K ++ N +D      +L+        +  + ++ ++   + 
Sbjct: 596 VLLKVEIENQVDADQTFHQLLGKDARERYRIIMSESALADDLDV 639



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 8/90 (8%)

Query: 722 LLDTIFSI-------GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
            LD +            + + + R+KGLGEMNASQL ETTL+P  R LL+V+I +   AD
Sbjct: 550 ALDDLHKEEILASIPANRKVEISRFKGLGEMNASQLRETTLDPTQRVLLKVEIENQVDAD 609

Query: 775 DLFSRLMGDEVEPRREFIQ-ENSLPSALDI 803
             F +L+G +   R   I  E++L   LD+
Sbjct: 610 QTFHQLLGKDARERYRIIMSESALADDLDV 639


>gi|268319492|ref|YP_003293148.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii FI9785]
 gi|262397867|emb|CAX66881.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii FI9785]
          Length = 661

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 270/597 (45%), Positives = 371/597 (62%), Gaps = 13/597 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N   SSYD  SIQIL GL+AV+KRP MYIG TD   GL+H+IYE++DN++DE++ GY   
Sbjct: 14  NKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNHLIYEIVDNSVDEAMAGYGKE 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV D GRG+PT +H E GI   EVI+T LHAGGKF +K+Y+ SGGLHGV
Sbjct: 73  INVTIHKDNSVTVQDFGRGMPTGMH-ESGIPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALSS+LK+R+ R+G  YE  F N G     L   G   +  GT +TF P   IF
Sbjct: 132 GSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDPTIF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   +NY+T+Q R+RE +FL   V+ +L D+R PE  +    Y+ GI++FVSYL+   K 
Sbjct: 192 STTTYNYETIQERIRESAFLLKGVKFTLTDEREPEHHDE-FLYEDGIKSFVSYLNED-KD 249

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            M       G ++ I ++ + ++NDGY EN + F NN+   DGG+H +G RS  T+    
Sbjct: 250 TMGDVFYFSGKQNGIEVEFSGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKAFND 309

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV+S V
Sbjct: 310 YAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDSIV 369

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSE 419
            + LS +L E+   A+ +V+K   A   R+AA++ARD +R  K       L GKL     
Sbjct: 370 YEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLTPAQS 429

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   +  ++EI T+I 
Sbjct: 430 RNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIH 489

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G D F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  ++  G +YI  P
Sbjct: 490 TIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIALP 548

Query: 540 PLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PLY + +G      ++Y   +E L +   +      ++ F     + +       ++
Sbjct: 549 PLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMN 605



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%)

Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + +    +   KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA  A+   + L
Sbjct: 570 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 629

Query: 781 MGDEVEPRREFIQEN 795
           MGD+V PRR++I EN
Sbjct: 630 MGDKVAPRRKWIDEN 644


>gi|315653530|ref|ZP_07906450.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners ATCC
           55195]
 gi|315488892|gb|EFU78534.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners ATCC
           55195]
          Length = 647

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 257/600 (42%), Positives = 370/600 (61%), Gaps = 15/600 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   N++YD  SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ GY
Sbjct: 1   MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D GRG+PT +H   G+   EVI+T LHAGGKF +K+Y+ SGGL
Sbjct: 58  GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WLK+R+ R+G  +E  F++ G     L   G+  + TGT +TF P S
Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + Y+T+Q RLRE +FL   V+ +L D+R P+ ++   +  G            
Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERGPQRKDEFYYDDG--IKSFVSYLNE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  +      +G  DNI ++ + ++NDGY ENV+ F NN+   DGG+H +G RS  TR 
Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV+
Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLAD 416
           + + + LS +L E+   A+ +V+K   A   R+AA++ARD +R         +  GKL  
Sbjct: 355 NIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTP 414

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              R+P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR   +  ++EI T
Sbjct: 415 AQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINT 474

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I  +G G+G   F+I    Y+KIIIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI
Sbjct: 475 MIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYI 533

Query: 537 IKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
             PPLY + +G+     ++Y   +E L+  +        ++ F     + +       ++
Sbjct: 534 ALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNADQLWETTMN 593



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%)

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738
           F +      I + R+      +  L    G  + I        L   +   G KG S+QR
Sbjct: 517 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFG-KGYSLQR 575

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+   + LMGD+V  RR++I EN
Sbjct: 576 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAERRVTTLMGDKVAARRKWIDEN 632


>gi|309803989|ref|ZP_07698071.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|309805612|ref|ZP_07699654.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|325912134|ref|ZP_08174532.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 143-D]
 gi|308163908|gb|EFO66173.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|308165050|gb|EFO67291.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|325476084|gb|EGC79252.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 143-D]
          Length = 647

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 257/600 (42%), Positives = 370/600 (61%), Gaps = 15/600 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   N++YD  SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ GY
Sbjct: 1   MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D GRG+PT +H   G+   EVI+T LHAGGKF +K+Y+ SGGL
Sbjct: 58  GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WLK+R+ R+G  +E  F++ G     L   G+  + TGT +TF P S
Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + Y+T+Q RLRE +FL   V+ +L D+R P+ ++   +  G            
Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  +      +G  DNI ++ + ++NDGY ENV+ F NN+   DGG+H +G RS  TR 
Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV+
Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLAD 416
           + + + LS +L E+   A+ +V+K   A   R+AA++ARD +R         +  GKL  
Sbjct: 355 NIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTP 414

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              R+P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR   +  ++EI T
Sbjct: 415 AQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINT 474

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I  +G G+G   F+I    Y+KIIIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI
Sbjct: 475 MIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYI 533

Query: 537 IKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
             PPLY + +G+     ++Y   +E L+  +        ++ F     + +       ++
Sbjct: 534 ALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNADQLWETTMN 593



 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%)

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738
           F +      I + R+      +  L    G  + I        L   +   G KG S+QR
Sbjct: 517 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFG-KGYSLQR 575

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+   + LMGD+V  RR++I EN
Sbjct: 576 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAERRVTTLMGDKVAARRKWIDEN 632


>gi|295693010|ref|YP_003601620.1| DNA topoisomerase iv, b subunit [Lactobacillus crispatus ST1]
 gi|295031116|emb|CBL50595.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus ST1]
          Length = 648

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 261/605 (43%), Positives = 370/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 3   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 62  VTIHSDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F + G     L   G     TGT +TF P   IFS 
Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R PE       Y  GI++FV YL+   K  +
Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDEREPE-HHDVFQYDDGIKSFVKYLNEG-KGTI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ + +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 239 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V +
Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I +G +YI  PPL
Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHGKVYIALPPL 537

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y +     +   +QY   +E L D          ++ F     + ++      +D   ++
Sbjct: 538 YRLQKGRGKKTQVQYAWTDEELADDEKKMGRGYSLQRFKGLGEMNAEQLWATTMDPQSRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I   ++      +  L    G K ++        L D    +GR G S+
Sbjct: 514 LTFFYRYMRPMIEHGKVYIALPPLYRLQKGRGKKTQVQYAWTDEELADDEKKMGR-GYSL 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QR+KGLGEMNA QLW TT++P +R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 573 QRFKGLGEMNAEQLWATTMDPQSRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631


>gi|256850406|ref|ZP_05555834.1| DNA topoisomerase IV subunitB [Lactobacillus crispatus MV-1A-US]
 gi|256712803|gb|EEU27796.1| DNA topoisomerase IV subunitB [Lactobacillus crispatus MV-1A-US]
          Length = 648

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 259/605 (42%), Positives = 369/605 (60%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 3   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V ++ D S TV D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 62  VIIHSDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F + G     L   G     TGT +TF P   IFS 
Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R PE       Y  GI++FV YL+   K  +
Sbjct: 181 TKYKYETIQERIREYAFLLKGVKFFLTDEREPE-HHDVFQYDDGIKSFVKYLNEG-KGTI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ + +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 239 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V +
Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     ++
Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSQN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I +G +YI  PPL
Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHGKVYIALPPL 537

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y +     +   +QY   +E L D          ++ F     + ++      +D   ++
Sbjct: 538 YRLQKGRGKKTQVQYAWTDEELADDEKKMGRGYSLQRFKGLGEMNAEQLWATTMDPQSRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I   ++      +  L    G K ++        L D    +GR G S+
Sbjct: 514 LTFFYRYMRPMIEHGKVYIALPPLYRLQKGRGKKTQVQYAWTDEELADDEKKMGR-GYSL 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QR+KGLGEMNA QLW TT++P +R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 573 QRFKGLGEMNAEQLWATTMDPQSRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631


>gi|309775455|ref|ZP_07670458.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916844|gb|EFP62581.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 643

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 248/593 (41%), Positives = 359/593 (60%), Gaps = 11/593 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD  SIQIL GLDAV+KRP MYIG TD   GLHH+++E++DN+IDE+L G+ D I
Sbjct: 1   MAENAYDGSSIQILDGLDAVRKRPGMYIGSTDS-RGLHHLVWEIVDNSIDEALNGHGDTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGV 123
            +T+  D    V D GRG+P D+H   G+ A +VI T LHAGGKF+ +  YK SGGLHGV
Sbjct: 60  RITIEKDNVICVEDEGRGMPVDMHAS-GVPAVQVIYTVLHAGGKFSTEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS W+++ + R G+IY M+F + G   + L V G     TG++V F     +F
Sbjct: 119 GASVVNALSEWVEVTVYRNGSIYRMNFSDGGSKVSKLEVIGKTS-KTGSKVRFKADKTMF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   +++  +  R +E +FL   +++ + D+R  + RE    Y+ G+ AF+ YL   K+ 
Sbjct: 178 STTKYSFHQIAERAQEDAFLLEGLKLVVRDEREGKEREEVYHYEQGLVAFMEYLHEDKQV 237

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
             +      G  + I +D A ++ D Y EN+  F N +  KDGGTH +G ++A T+    
Sbjct: 238 FHKPVA-FSGMANEIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNAFTKVFNE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K+   K   ++  G D REG T +LS+ +P+   +F  QTK KL ++E ++ V+S V
Sbjct: 297 YARKNGLLKDKDKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTAEAKAAVDSIV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLADCS 418
           ++ LS +LEE+   A  ++KK+  AS  R+AAR+AR+  R+          L GKLA   
Sbjct: 357 SEKLSYFLEENKELAITLIKKMQRASTAREAARKAREDARKGKSKGKTEKILSGKLASAQ 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D +K EL+LVEGDSAGGSAKQGR  + QAILPLRGK+LN E+A    +  ++E+ T+I
Sbjct: 417 SKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKNEELNTII 476

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG G+G + F      YHK+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  
Sbjct: 477 HALGAGVGAN-FHAEDSNYHKVIIMTDADTDGAHIQILLLTFFYRYMRELIEQGMVYIAL 535

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           PPLY + +GK +QY   +E L++          ++ +     + +       +
Sbjct: 536 PPLYKLQKGKDIQYAWTDEELDELRKTFPKGFSLQRYKGLGEMNADQLWDTTM 588



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 3/270 (1%)

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           S        +    +  + R  + +    +   +          E  L        SK+ 
Sbjct: 361 SYFLEENKELAITLIKKMQRASTAREAARKAREDARKGKSKGKTEKILSGKLASAQSKDA 420

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
            +  +                  K      +   V N E     N+    +L   ++ + 
Sbjct: 421 RKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKNEELNTIIHALG 480

Query: 647 EKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR-IEENYLTIL 705
                ++H   +N   ++           +     + +F  +Y R    + +    L  L
Sbjct: 481 AGVGANFHAEDSNYHKVIIMTDADTDGAHI--QILLLTFFYRYMRELIEQGMVYIALPPL 538

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
             +  G  I+       LD +     KG S+QRYKGLGEMNA QLW+TT+ P+TR+L++V
Sbjct: 539 YKLQKGKDIQYAWTDEELDELRKTFPKGFSLQRYKGLGEMNADQLWDTTMCPETRTLIQV 598

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQEN 795
            I DA  A+   S LMGD+   RR +I+EN
Sbjct: 599 TIDDAVVAEKRVSVLMGDKANLRRNWIEEN 628


>gi|312871805|ref|ZP_07731893.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311092747|gb|EFQ51103.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 647

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 256/600 (42%), Positives = 370/600 (61%), Gaps = 15/600 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   N++YD  SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ G+
Sbjct: 1   MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D GRG+PT +H   G+   EVI+T LHAGGKF +K+Y+ SGGL
Sbjct: 58  GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WLK+R+ R+G  +E  F++ G     L   G+  + TGT +TF P S
Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + Y+T+Q RLRE +FL   V+ +L D+R P+ ++   +  G            
Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  +      +G  DNI ++ + ++NDGY ENV+ F NN+   DGG+H +G RS  TR 
Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV+
Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLAD 416
           + + + LS +L E+   A+ +V+K   A   R+AA++ARD +R         +  GKL  
Sbjct: 355 NIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTP 414

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              R+P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR   +  ++EI T
Sbjct: 415 AQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINT 474

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I  +G G+G   F+I    Y+KIIIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI
Sbjct: 475 MIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYI 533

Query: 537 IKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
             PPLY + +G+     ++Y   +E L+  +        ++ F     + +       ++
Sbjct: 534 ALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNADQLWETTMN 593



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%)

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738
           F +      I + R+      +  L    G  + I        L   +   G KG S+QR
Sbjct: 517 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFG-KGYSLQR 575

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+   + LMGD+V  RR++I EN
Sbjct: 576 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAERRVTTLMGDKVAARRKWIDEN 632


>gi|227889992|ref|ZP_04007797.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227849436|gb|EEJ59522.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 661

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 270/597 (45%), Positives = 371/597 (62%), Gaps = 13/597 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N   SSYD  SIQIL GL+AV+KRP MYIG TD   GL+H+IYE++DN++DE++ GY   
Sbjct: 14  NKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNHLIYEIVDNSVDEAMAGYGKE 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV D GRG+PT +H E GI   EVI+T LHAGGKF +K+Y+ SGGLHGV
Sbjct: 73  INVTIHKDNSVTVQDFGRGMPTGMH-ESGIPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALSS+LK+R+ R+G  YE  F N G     L   G   +  GT +TF P   IF
Sbjct: 132 GSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDPTIF 191

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   +NY+T+Q R+RE +FL   V+ +L D+R PE  +    Y+ GI++FVSYL+   K 
Sbjct: 192 STTTYNYETIQERIRESAFLLKGVKFTLTDEREPEHHDE-FLYEDGIKSFVSYLNED-KD 249

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            M       G ++ I ++ + ++NDGY EN + F NN+   DGG+H +G RS  T+    
Sbjct: 250 TMGDVFYFSGKQNGIEVEFSGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKSFND 309

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV+S V
Sbjct: 310 YAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDSIV 369

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSE 419
            + LS +L E+   A+ +V+K   A   R+AA++ARD +R  K       L GKL     
Sbjct: 370 YEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLTPAQS 429

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   +  ++EI T+I 
Sbjct: 430 RNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIH 489

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G D F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  ++  G +YI  P
Sbjct: 490 TIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIALP 548

Query: 540 PLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PLY + +G      ++Y   +E L +   +      ++ F     + +       ++
Sbjct: 549 PLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMN 605



 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%)

Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + +    +   KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA  A+   + L
Sbjct: 570 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 629

Query: 781 MGDEVEPRREFIQEN 795
           MGD+V PRR++I EN
Sbjct: 630 MGDKVAPRRKWIDEN 644


>gi|227878639|ref|ZP_03996556.1| DNA topoisomerase IV subunit B [Lactobacillus crispatus JV-V01]
 gi|256843237|ref|ZP_05548725.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 125-2-CHN]
 gi|262046445|ref|ZP_06019407.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|293380597|ref|ZP_06626652.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 214-1]
 gi|312977468|ref|ZP_07789216.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus CTV-05]
 gi|227861759|gb|EEJ69361.1| DNA topoisomerase IV subunit B [Lactobacillus crispatus JV-V01]
 gi|256614657|gb|EEU19858.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 125-2-CHN]
 gi|260573316|gb|EEX29874.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922844|gb|EFD99791.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 214-1]
 gi|310895899|gb|EFQ44965.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus CTV-05]
          Length = 648

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 260/605 (42%), Positives = 369/605 (60%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 3   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V ++ D S TV D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 62  VIIHSDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F + G     L   G     TGT +TF P   IFS 
Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R PE       Y  GI++FV YL+   K  +
Sbjct: 181 TKYKYETIQERIREYAFLLKGVKFFLTDEREPE-HHDVFQYDDGIKSFVKYLNEG-KGTI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ + +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 239 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V +
Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I +G +YI  PPL
Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHGKVYIALPPL 537

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y +     +   +QY   +E L D          ++ F     + ++      +D   ++
Sbjct: 538 YRLQKGRGKKTQVQYAWTDEELADDEKKMGRGYSLQRFKGLGEMNAEQLWATTMDPQSRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I   ++      +  L    G K ++        L D    +GR G S+
Sbjct: 514 LTFFYRYMRPMIEHGKVYIALPPLYRLQKGRGKKTQVQYAWTDEELADDEKKMGR-GYSL 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QR+KGLGEMNA QLW TT++P +R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 573 QRFKGLGEMNAEQLWATTMDPQSRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631


>gi|73916452|gb|AAZ93094.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 536

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 266/542 (49%), Positives = 364/542 (67%), Gaps = 13/542 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG  GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALS+WL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413
           V+  V D L+ +L E+   A  +++K + A   R+AAR+ARD +R  +K   D   L GK
Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L ++E
Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 534 LY 535
           +Y
Sbjct: 535 VY 536


>gi|94992112|ref|YP_600211.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS2096]
 gi|94545620|gb|ABF35667.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS2096]
          Length = 651

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 270/617 (43%), Positives = 388/617 (62%), Gaps = 5/617 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T         ++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKAGFASISVWEIVDNSIDEALAGFASH 68

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 69  IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 128

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF+
Sbjct: 129 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 187

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 188 ETTQFDYSVLAKRIQELAFLNHGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 247

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 248 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 307

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 308 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 367

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D 
Sbjct: 368 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 427

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 428 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 487

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G D FD++K RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 488 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 546

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++     +   D       + E      SK  + +      +DD    +  + 
Sbjct: 547 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 604

Query: 603 DFYPNHDKTFIEQAVIS 619
                  +  ++ A  +
Sbjct: 605 PENRLMARVTVDDAAEA 621



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 60/76 (78%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           SIGR   ++QRYKGLGEM+  QLWETT++P+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 576 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 635

Query: 788 RREFIQENSLPSALDI 803
           RR+FI+EN++ S LDI
Sbjct: 636 RRDFIEENAVYSTLDI 651


>gi|225016753|ref|ZP_03705945.1| hypothetical protein CLOSTMETH_00665 [Clostridium methylpentosum
           DSM 5476]
 gi|224950421|gb|EEG31630.1| hypothetical protein CLOSTMETH_00665 [Clostridium methylpentosum
           DSM 5476]
          Length = 642

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 284/563 (50%), Positives = 386/563 (68%), Gaps = 5/563 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N +YD + IQ+L+GL+AV+KRP MYIG T G  GLHH++YE++DNAIDE+L G+   I V
Sbjct: 5   NQNYDENQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVYEIVDNAIDEALAGFCTQIDV 63

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +       V DNGRGIPT +H++EGISAA V+ T LHAGGKF    YKV+GGLHGVG S
Sbjct: 64  EILPGNIIHVVDNGRGIPTGIHQKEGISAATVVYTILHAGGKFGGGGYKVAGGLHGVGAS 123

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS WL+L++    NI+   F  G  D  + V G   + TGTEV F    +IFS  +
Sbjct: 124 VVNALSEWLELKVYDGENIHYQRFERGHYDKQMEVIGKT-DRTGTEVAFKADPEIFSETE 182

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD--RHKKPLM 244
           ++YDTL  RLRE +FLN+ V+I + D+R PEP    + Y+GGI +FV ++   +  + L 
Sbjct: 183 YDYDTLLTRLREQAFLNAGVKIVMADRRQPEPVVENLHYEGGIISFVEFIHKRKSLETLH 242

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I ++    +   ++A+++ND Y+E +L F NNI   +GGTH  G ++ALTR    Y 
Sbjct: 243 PDVIYLKAQEGDSVAEVALQYNDSYNELILSFANNIHTAEGGTHEIGFKNALTRVFNDYG 302

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K+  +++ GDD REG T+++S+K+ +  F  QTK KL + EVR++V+  V++ L
Sbjct: 303 RKNNLLKEADKNLSGDDVREGLTAIISVKLTECEFEGQTKSKLGNIEVRALVDRMVSEKL 362

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + + EE+P  A+ I  K L+A   R+AAR+AR+LTRRK  L+ ASLPGKLADCSERDP  
Sbjct: 363 TNFFEENPSVARSIFDKALNAQRAREAARKARELTRRKSALETASLPGKLADCSERDPAL 422

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +EL++VEGDSAGGSAK GR R+ QAILPL GK+LNVE+AR D++  + ++  ++TALGT 
Sbjct: 423 TELYIVEGDSAGGSAKSGRERKYQAILPLWGKMLNVEKARLDRVYGNDKLMPVVTALGTS 482

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG D FDI KLRY+KI+IM DADVDG+HIRTLLLTFFFR M  LI  G +YI +PPLY +
Sbjct: 483 IG-DDFDITKLRYNKIVIMADADVDGSHIRTLLLTFFFRFMRPLIDQGHVYIAQPPLYKL 541

Query: 545 TRGKSLQYVKDEESLEDYLINQS 567
           +RGK  +Y   ++    YL    
Sbjct: 542 SRGKQHRYAYSDKERNQYLSELR 564



 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R +++V++ DA  AD++F+ LMGD+V PRREFI++N
Sbjct: 574 IQRYKGLGEMDPEQLWETTMNPENRVMIKVEMEDAVAADEVFTILMGDKVGPRREFIEKN 633

Query: 796 SLPS-ALDI 803
           +     LD+
Sbjct: 634 AQYVQNLDV 642


>gi|225870671|ref|YP_002746618.1| topoisomerase IV subunit B [Streptococcus equi subsp. equi 4047]
 gi|225700075|emb|CAW94141.1| topoisomerase IV subunit B [Streptococcus equi subsp. equi 4047]
          Length = 649

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 260/623 (41%), Positives = 386/623 (61%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GL+AV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MAKKEISITNYNDDAIQVLEGLEAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I VTLN DGS T+SD+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNEIDVTLNKDGSATISDSGRGMPTGQHA-LGIPTVQVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L    +A    +GT VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIATAPKSKSGTRVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  +F ++T+  RL+E +FL  +V+++L D R  +P      Y+ G++ FV+YL+
Sbjct: 179 DDKIFSTTEFKWNTIAERLKESAFLLKTVKMTLTDLRGDDPVVEEFHYENGVQDFVAYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T
Sbjct: 239 EDKETLTP-VIYMEGQEQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           VES V++ L+ +L E+   A  +++       +       R      +K   D   L GK
Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMVYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LED          ++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGASLQRYKGLGEMNADQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            +D   +  I   I D      +
Sbjct: 597 TMDPDTRTLIRVTIDDLARAERR 619



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 56/73 (76%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L+ +     KG S+QRYKGLGEMNA QLWETT++PDTR+L+RV I D ++A+   S LMG
Sbjct: 566 LEDLRKEFGKGASLQRYKGLGEMNADQLWETTMDPDTRTLIRVTIDDLARAERRVSVLMG 625

Query: 783 DEVEPRREFIQEN 795
           D+  PRR++I++N
Sbjct: 626 DKAAPRRQWIEDN 638


>gi|82798482|gb|ABB91904.1| DNA gyrase subunit B [Acholeplasma cavigenitalium]
          Length = 588

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 253/567 (44%), Positives = 364/567 (64%), Gaps = 6/567 (1%)

Query: 24  VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83
           V+KRP MYIG T G  G HH+++E++DN+IDE+L GYA  I + +       VSD+GRGI
Sbjct: 1   VRKRPGMYIG-TTGSDGFHHLVWEIVDNSIDEALAGYAKEILLEILPGEIIRVSDDGRGI 59

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143
           P D+H   G  A E IMT LH+GGKF+ +SYKVSGGLHGVG +VVNALS W  + + R  
Sbjct: 60  PVDIHPHTGRPAVETIMTTLHSGGKFDGESYKVSGGLHGVGAAVVNALSEWFVVEVHRNN 119

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
             Y  SF  GI D  L V G + + +GT + +    +IF     ++++ L+ R+++L+FL
Sbjct: 120 QAYRQSFKRGIPDGDLEVCGESAH-SGTIIEYKFDPEIFIETTSYDFERLRQRIQQLAFL 178

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           N  V++++ DKR  E  E    Y+GG+  +  +L+  K  + Q     +   D+I+I++ 
Sbjct: 179 NRGVKLTIADKRKSEAVEFEYLYEGGLVEYAEFLNGGKAKINQELFYTEEMVDDINIEIT 238

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           +++ND Y+EN+  F NNIP ++GG H  G + AL R + +Y + +    K++ +  G+D 
Sbjct: 239 IQYNDTYNENIYSFANNIPTREGGMHEDGFKMALRRVLFNYAKDNK-LVKEEEAFAGEDV 297

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K PDP+F  QTK KL ++EVR++    +  GL  +L E+P +AK I++K 
Sbjct: 298 REGLVAIISVKHPDPQFEGQTKTKLGNTEVRAITSQVLQSGLERFLLENPNDAKAIIEKA 357

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
             A + R AA +AR+ TRRK  LD      KLADC  +D  ++EL++VEGDSAGGSAKQG
Sbjct: 358 KKARLARIAAHKAREQTRRKNPLDQLGFASKLADCRTKDATRAELYIVEGDSAGGSAKQG 417

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R  E QAILPLRGK+LNVE+A  +++L++QEI TL  A+GTG G D FD +K RYHKIII
Sbjct: 418 RESEFQAILPLRGKVLNVEKANIERILNNQEILTLFQAIGTGFG-DEFDASKARYHKIII 476

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDGAHIRTLLLTF +R +  LI  G++Y  +PPLY I+ G+  +YV  ++ LE+ 
Sbjct: 477 MTDADVDGAHIRTLLLTFLYRYLRPLIELGYIYFAQPPLYKISYGRREEYVYSDQELEE- 535

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRN 589
            +               G ++   L +
Sbjct: 536 TLKTFGERYQIQRYKGLGEMNPEQLWD 562



 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 17/240 (7%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
                + +     K+      +    +     +       ++  +          + +  
Sbjct: 364 RIAAHKAREQTRRKNPLDQLGFASKLADCRTKDATRAELYIVEGDSAGGSAKQGRESE-F 422

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                       +E+A I  + N +    +  ++ +   +  +    +  K    +  + 
Sbjct: 423 QAILPLRGKVLNVEKANIERILNNQEILTLFQAIGTGFGDEFDASKARYHKIIIMTDADV 482

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIKITG 718
           D    R               + +F  +Y R         +             +  +  
Sbjct: 483 DGAHIRT-------------LLLTFLYRYLRPLIELGYIYFAQPPLYKISYGRREEYVYS 529

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              L +T+ + G +   +QRYKGLGEMN  QLW+TT+NP+TR+LLRV + DA  AD +F+
Sbjct: 530 DQELEETLKTFGER-YQIQRYKGLGEMNPEQLWDTTMNPETRTLLRVTLKDAMDADQVFT 588


>gi|309809880|ref|ZP_07703730.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169832|gb|EFO71875.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 647

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 256/600 (42%), Positives = 369/600 (61%), Gaps = 15/600 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   N++YD  SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ G+
Sbjct: 1   MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D GRG+PT +H   G+   EVI+T LHAGGKF +K+Y+ SGGL
Sbjct: 58  GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WLK+R+ R+G  +E  F++ G     L   G+  + TGT +TF P S
Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + Y+T+Q RLRE +FL   V+ +L D+R P+ ++   +  G            
Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  +      +G  DNI ++ + ++NDGY ENV+ F NN+   DGG+H +G RS  TR 
Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV+
Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLAD 416
           + + + LS +L E+   A+ +V+K   A   R+AA++ARD +R         +  GKL  
Sbjct: 355 NIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTP 414

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              R P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR   +  ++EI T
Sbjct: 415 AQSRIPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINT 474

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I  +G G+G   F+I    Y+KIIIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI
Sbjct: 475 MIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYI 533

Query: 537 IKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
             PPLY + +G+     ++Y   +E L+  +        ++ F     + +       ++
Sbjct: 534 ALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNADQLWETTMN 593



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%)

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738
           F +      I + R+      +  L    G  + I        L   +   G KG S+QR
Sbjct: 517 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFG-KGYSLQR 575

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+   + LMGD+V  RR++I EN
Sbjct: 576 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAEHRVTTLMGDKVAARRKWIDEN 632


>gi|294813745|ref|ZP_06772388.1| DNA gyrase subunit B, novobiocin-sensitive [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326344|gb|EFG07987.1| DNA gyrase subunit B, novobiocin-sensitive [Streptomyces
           clavuligerus ATCC 27064]
          Length = 693

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 280/658 (42%), Positives = 388/658 (58%), Gaps = 22/658 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V
Sbjct: 37  TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIQV 95

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +   E   A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 96  TILADGGVRVVDNGRGIPVGIVPSENKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 155

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + +K +G  +   +  G+   PL        +TGT VTF    DIF   +
Sbjct: 156 VVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEETA-ETGTSVTFWADGDIFETTE 214

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230
           ++++TL  R +E++FLN  + ++L D+R                  + R +T +Y+GGI 
Sbjct: 215 YSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGADTAEEAEQEQVRTVTYYYEGGIV 274

Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I   +GGT
Sbjct: 275 DFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYTEGVYSFANTIHTHEGGT 334

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK KL
Sbjct: 335 HEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREGLTAIISVKLGEPQFEGQTKTKL 394

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E ++ V+  V++ L+ W + +P EA  IV+K + A   R AAR+ARDLTRRKG+L+ 
Sbjct: 395 GNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQAQTARVAARKARDLTRRKGLLES 454

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE+AR DK
Sbjct: 455 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARIDK 514

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L + E+  LI+A GTGI +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  
Sbjct: 515 ILQNTEVQALISAFGTGIHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 573

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+  G +++ +PPLY I  G+        +   D L+     +   +  DS         
Sbjct: 574 LVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQQGKRIREDSIQRFKGLGE 633

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            N  +  +    +              QA          D E   S   + A  + F+
Sbjct: 634 MNAEELRVTTMDVEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 691



 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +G+   K I   S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 607 DALVELGKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDDAAQADDLF 666

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 667 SVLMGEDVEARRSFIQRNAKDVRFLDI 693


>gi|302191325|ref|ZP_07267579.1| DNA topoisomerase IV subunit B [Lactobacillus iners AB-1]
 gi|312872974|ref|ZP_07733034.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|312874129|ref|ZP_07734163.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|312875688|ref|ZP_07735689.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325912715|ref|ZP_08175098.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 60-B]
 gi|329920278|ref|ZP_08277062.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 1401G]
 gi|311088942|gb|EFQ47385.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311090199|gb|EFQ48609.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311091496|gb|EFQ49880.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|325478136|gb|EGC81265.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 60-B]
 gi|328936323|gb|EGG32771.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 1401G]
          Length = 647

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 257/600 (42%), Positives = 370/600 (61%), Gaps = 15/600 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   N++YD  SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ GY
Sbjct: 1   MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D GRG+PT +H   G+   EVI+T LHAGGKF +K+Y+ SGGL
Sbjct: 58  GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WLK+R+ R+G  +E  F++ G     L   G+  + TGT +TF P S
Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + Y+T+Q RLRE +FL   V+ +L D+R P+ ++   +  G            
Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  +      +G  DNI ++ + ++NDGY ENV+ F NN+   DGG+H +G RS  TR 
Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV+
Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLAD 416
           + + + LS +L E+   A+ +V+K   A   R+AA++ARD +R         +  GKL  
Sbjct: 355 NIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTP 414

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              R+P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR   +  ++EI T
Sbjct: 415 AQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINT 474

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I  +G G+G   F+I    Y+KIIIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI
Sbjct: 475 MIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYI 533

Query: 537 IKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
             PPLY + +G+     ++Y   +E L+  +        ++ F     + +       ++
Sbjct: 534 ALPPLYKLEKGQGKNVEIKYSWTDEELQKDVKEFGKGYSLQRFKGLGEMNADQLWETTMN 593



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 5/117 (4%)

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738
           F +      I + R+      +  L    G  ++I        L   +   G KG S+QR
Sbjct: 517 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVEIKYSWTDEELQKDVKEFG-KGYSLQR 575

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+   + LMGD+V  RR++I EN
Sbjct: 576 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAERRVTTLMGDKVAARRKWIDEN 632


>gi|195978267|ref|YP_002123511.1| DNA topoisomerase IV subunit B [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974972|gb|ACG62498.1| Topoisomerase IV subunit B ParE [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 649

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 261/623 (41%), Positives = 385/623 (61%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GL+AV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MAKKEISITNYNDDAIQVLEGLEAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I VTLN DGS T+SD+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNEIDVTLNKDGSATISDSGRGMPTGQHA-LGIPTVQVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L    SA    +GT VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIASAPKSKSGTRVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  +F ++T+  RL+E +FL  +V+++L D R  +P      Y+ G++ FV+YL+
Sbjct: 179 DDKIFSTTEFKWNTIAERLKESAFLLKTVKMTLTDLRGDDPVVEEFHYENGVQDFVAYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T
Sbjct: 239 EDKETLTP-VIYMEGQEQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           VES V++ L+ +L E+   A  +++       +       R      +K   D   L GK
Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGLLSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LED          ++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGATLQRYKGLGEMNASQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            +D   +  I   I D      +
Sbjct: 597 TMDPDTRTLIRVTIDDLARAERR 619



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       ++    N D ++           +    
Sbjct: 461 VLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLL 520

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      + +  +      +  +    G   K++       L+ +     KG ++Q
Sbjct: 521 LTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGATLQ 580

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNASQLWETT++PDTR+L+RV I D ++A+   S LMGD+  PRR++I++N
Sbjct: 581 RYKGLGEMNASQLWETTMDPDTRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 638


>gi|172057602|ref|YP_001814062.1| DNA topoisomerase IV subunit B [Exiguobacterium sibiricum 255-15]
 gi|171990123|gb|ACB61045.1| DNA topoisomerase IV, B subunit [Exiguobacterium sibiricum 255-15]
          Length = 653

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 266/600 (44%), Positives = 385/600 (64%), Gaps = 17/600 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ ++  ++Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNAIDE+L G+
Sbjct: 1   MATDL--NNYNDDAIQVLEGLEAVRKRPGMYIGSTD-HRGLHHLVYEIVDNAIDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V ++ D + TV D+GRG+PT +H   G   AEVI T LHAGGKF Q  YK SGGL
Sbjct: 58  GEQIDVIIHKDNAITVRDHGRGMPTGMHAS-GKPTAEVIFTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS+ LK+ I R+G  +E +F + GI    L+ TG      GT V F P  
Sbjct: 117 HGVGASVVNALSTQLKVTIYRDGKQFEQTFEDGGIPKTTLLETG-TTRQKGTSVYFKPDG 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   +NYDTL  RLRE +FL   ++I+L D+RS +    T  Y+ G+  FV YL+  
Sbjct: 176 KIFSTLTYNYDTLAERLRESAFLLKGLKITLTDERSDKA--DTFQYEDGVSEFVGYLNDD 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L  +    +G+ ++I +D+A ++ D Y ENVL F NN+  +DGGTH  G ++A+TR 
Sbjct: 234 KDTLHPTVA-FEGTENDIEVDIAFQFTDAYSENVLSFVNNVRTRDGGTHEVGAKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           +  Y  K+   K+  +++ G+D REG T ++SI++P+   +F  QTK KL S E R+  +
Sbjct: 293 MNEYARKNTLLKEKDKNLDGNDIREGLTMIVSIRIPEEFLQFEGQTKSKLGSPEARTSCD 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416
           + +   LS +LEE+P  A +++KK + A+  R+AAR+AR+  R  K     + L GKL  
Sbjct: 353 AVITRRLSTYLEENPQTATLLIKKAIRAAQAREAARKAREEARNGKKKKRSSILNGKLTP 412

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
            + ++ +K+ELFLVEGDSAGGSAKQGR+R  QAILPLRGK+LN E+A+   ++ ++EI  
Sbjct: 413 AASKNAEKNELFLVEGDSAGGSAKQGRNRTFQAILPLRGKVLNTEKAKLADIMKNEEINM 472

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I A+G+G+G D FD++   + K+IIMTDAD DGAHI+ LLLTFFFR M  LI  G +++
Sbjct: 473 IIHAIGSGVGAD-FDLSDCNFDKVIIMTDADTDGAHIQVLLLTFFFRYMRPLIDAGKVFV 531

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
             PPLY ++    + +  +YV DEE+L            I+ +     + +       +D
Sbjct: 532 ALPPLYRVSKGKGKSEKFEYVWDEETLAKTTKKFGKGYMIQRYKGLGEMNAPQLWETTMD 591



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   ++ I       +  S  N D ++           +    
Sbjct: 453 VLNTEKAKLADIMKNEEINMIIHAIGSGVGADFDLSDCNFDKVIIMTDADTDGAHIQVLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQ 737
             F F      I + ++      +  +       +K +       L        KG  +Q
Sbjct: 513 LTFFFRYMRPLIDAGKVFVALPPLYRVSKGKGKSEKFEYVWDEETLAKTTKKFGKGYMIQ 572

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT++P+TR+L+RV I DA+ A+   S LMGD V  RR +I++N
Sbjct: 573 RYKGLGEMNAPQLWETTMDPETRTLIRVTIDDAAVAEKRVSVLMGDNVGHRRSWIEDN 630


>gi|6056198|gb|AAF02815.1|AC009400_11 putative DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 657

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 266/600 (44%), Positives = 372/600 (62%), Gaps = 15/600 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  +  Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  G+A 
Sbjct: 6   ESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGFAS 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120
            I V L+ D S ++SDNGRGIPTDLH   G S+ E ++T LHAGGKF  KS  Y VSGGL
Sbjct: 65  KIDVVLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGL 124

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ ++R+G  ++  +  G     L        +    GT + F P
Sbjct: 125 HGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWP 184

Query: 178 SSD----IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT--MFYKGGIEA 231
             +      +   F+++T+  R+REL+FLN  V ISL  +     R++    FY GG+  
Sbjct: 185 DKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTE 244

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +VS+L+  KKPL       +   +  ++D++++W  D Y + +L + N+I   DGGTH+ 
Sbjct: 245 YVSWLNTDKKPLHDVLG-FRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIE 303

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G++++LTR + S  +K    K+   S+ G+  REG T ++S+K+P+P F  QTK +L + 
Sbjct: 304 GVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNP 363

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR +V+  V + L+ +LE HP   + I+ K L+A     AA+RAR+L R K VL  +SL
Sbjct: 364 EVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSL 423

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS  DP +SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  
Sbjct: 424 PGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYK 483

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++EI  LI  LG G+  + F+   LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L  
Sbjct: 484 NEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFD 543

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            G +Y+  PPL+ + RGK   Y  D+ +L+    +   +           G +    L  
Sbjct: 544 AGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPGNASYNIQRFKGLGEMMPAQLWE 603



 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 120/340 (35%), Gaps = 38/340 (11%)

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556
           K+I   D  + G H+R  L      ++P+    G        P +  I      +Y+ + 
Sbjct: 321 KVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEY 380

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI----------------------DDA 594
             L   ++   +S+ +  +  +       +L                           + 
Sbjct: 381 LELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEI 440

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKS 649
             ++           +    QA++       + +  + +   K     N I       K 
Sbjct: 441 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKG 500

Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           E     ++    I++      V    +      F F  +     +  I      +  +  
Sbjct: 501 EDFNKENLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVER 559

Query: 710 NGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                      + L  I +   G    ++QR+KGLGEM  +QLWETT+NPDTR L ++ +
Sbjct: 560 GKQAHYCYD-DAALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVV 618

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS----LPSALDI 803
            DA++ + +FS LMG  V+ R+E I+  +    L   LDI
Sbjct: 619 DDAAETNMVFSSLMGARVDVRKELIKSAATRMNLE-NLDI 657


>gi|257051019|sp|Q9SS38|GYRBP_ARATH RecName: Full=DNA gyrase subunit B, chloroplastic; Flags: Precursor
          Length = 661

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 266/600 (44%), Positives = 372/600 (62%), Gaps = 15/600 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  +  Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  G+A 
Sbjct: 10  ESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGFAS 68

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120
            I V L+ D S ++SDNGRGIPTDLH   G S+ E ++T LHAGGKF  KS  Y VSGGL
Sbjct: 69  KIDVVLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGL 128

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ ++R+G  ++  +  G     L        +    GT + F P
Sbjct: 129 HGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWP 188

Query: 178 SSD----IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT--MFYKGGIEA 231
             +      +   F+++T+  R+REL+FLN  V ISL  +     R++    FY GG+  
Sbjct: 189 DKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTE 248

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +VS+L+  KKPL       +   +  ++D++++W  D Y + +L + N+I   DGGTH+ 
Sbjct: 249 YVSWLNTDKKPLHDVLG-FRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIE 307

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G++++LTR + S  +K    K+   S+ G+  REG T ++S+K+P+P F  QTK +L + 
Sbjct: 308 GVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNP 367

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR +V+  V + L+ +LE HP   + I+ K L+A     AA+RAR+L R K VL  +SL
Sbjct: 368 EVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSL 427

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS  DP +SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+ER     M  
Sbjct: 428 PGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYK 487

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++EI  LI  LG G+  + F+   LRYHKIII+TDADVDGAHIRTLLLTFFFR   +L  
Sbjct: 488 NEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFD 547

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            G +Y+  PPL+ + RGK   Y  D+ +L+    +   +           G +    L  
Sbjct: 548 AGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPGNASYNIQRFKGLGEMMPAQLWE 607



 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 120/340 (35%), Gaps = 38/340 (11%)

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556
           K+I   D  + G H+R  L      ++P+    G        P +  I      +Y+ + 
Sbjct: 325 KVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEY 384

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI----------------------DDA 594
             L   ++   +S+ +  +  +       +L                           + 
Sbjct: 385 LELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEI 444

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKS 649
             ++           +    QA++       + +  + +   K     N I       K 
Sbjct: 445 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKG 504

Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709
           E     ++    I++      V    +      F F  +     +  I      +  +  
Sbjct: 505 EDFNKENLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVER 563

Query: 710 NGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                      + L  I +   G    ++QR+KGLGEM  +QLWETT+NPDTR L ++ +
Sbjct: 564 GKQAHYCYD-DAALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVV 622

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS----LPSALDI 803
            DA++ + +FS LMG  V+ R+E I+  +    L   LDI
Sbjct: 623 DDAAETNMVFSSLMGARVDVRKELIKSAATRMNLE-NLDI 661


>gi|237732924|ref|ZP_04563405.1| DNA topoisomerase parE [Mollicutes bacterium D7]
 gi|229383993|gb|EEO34084.1| DNA topoisomerase parE [Coprobacillus sp. D7]
          Length = 645

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 263/601 (43%), Positives = 373/601 (62%), Gaps = 16/601 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S+YD  +IQIL+GL+AV+KRP MYIG TD   GLHH+++E++DNAIDE+L G+
Sbjct: 1   MNYMAAKSNYDESNIQILEGLEAVRKRPGMYIGSTDA-RGLHHLVWEIVDNAIDEALSGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGG 119
            D I VT+  D S  V+D+GRG+PT +H   G    EVI+T LHAGGKFN    YK SGG
Sbjct: 60  GDNIQVTICKDNSIKVTDHGRGMPTGMHAS-GKPTTEVILTILHAGGKFNEDGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSSWL++ I R+G I++  F + G     L V G + N TGT + F+P 
Sbjct: 119 LHGVGASVVNALSSWLEVTIYRDGKIWQQRFEDGGSKVGKLKVIGKS-NQTGTTIHFMPD 177

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           S IFSV ++N+ T+  RL E +FL   ++I L+D+R+ +          G+ AFV YL+ 
Sbjct: 178 SSIFSVYEYNFSTISERLMESAFLLKGIKIDLVDERTGKEISYQY--DNGLTAFVEYLNY 235

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L    I I+G+ + I +D+AM++  GY E  L F N +   DGGTH +G RSALTR
Sbjct: 236 EKETLN-EIINIEGTNNEIEVDVAMQFTSGYQETTLSFVNLVRTGDGGTHETGFRSALTR 294

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVV 356
               Y  K    K+  +++ G+D REG ++++SIK+P+   +F  QTK KL + E R+VV
Sbjct: 295 TFNEYARKYGLLKEKDKNLEGNDVREGLSAIISIKVPEHYLQFEGQTKSKLGTPEARNVV 354

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASM-VRDAARRARDLTRRKGVLDIASLPGKLA 415
           ++ V + L+ +LEEH   A  +VKK++ A+     A +      + KG      L GKLA
Sbjct: 355 DTVVYEKLTYFLEEHKETADNLVKKMIKAAQVRDAARKAREAARKGKGPRQEKILSGKLA 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +D K+ EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A    +L ++EI 
Sbjct: 415 PAQSKDKKRKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVVNTEKAAMADILKNEEIA 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G D F+     Y+K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 475 TIINTIGAGVGAD-FNEKDSNYNKVIIMTDADTDGAHIQILLLTFFYRYMRDLITAGKVY 533

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY ++    + + + Y  +E+ LE+          ++ +     + +       +
Sbjct: 534 IALPPLYKVSKKSGKKEDIVYAWEEDELEEAKKKIGRGYNVQRYKGLGEMNASQLWETTM 593

Query: 592 D 592
           +
Sbjct: 594 N 594



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 7/180 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E     ++    ++A  +N I       ++   +N + ++           +    
Sbjct: 456 VVNTEKAAMADILKNEEIATIINTIGAGVGADFNEKDSNYNKVIIMTDADTDGAHI--QI 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI-FSIGRK----GIS 735
            + +F  +Y R      +           +    K        +       +K    G +
Sbjct: 514 LLLTFFYRYMRDLITAGKVYIALPPLYKVSKKSGKKEDIVYAWEEDELEEAKKKIGRGYN 573

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNASQLWETT+NP+TR+L++V I DA+  +   S LMGD+VEPRRE+I++N
Sbjct: 574 VQRYKGLGEMNASQLWETTMNPETRTLIQVSIEDAAIVERRVSVLMGDKVEPRREWIEQN 633


>gi|260583815|ref|ZP_05851563.1| DNA topoisomerase IV, B subunit [Granulicatella elegans ATCC
           700633]
 gi|260158441|gb|EEW93509.1| DNA topoisomerase IV, B subunit [Granulicatella elegans ATCC
           700633]
          Length = 682

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 262/667 (39%), Positives = 380/667 (56%), Gaps = 21/667 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     + Y+ DSIQ+L+GL+AV+KRP MYIG TD   GLHH+ YE++DNA+DE+L GY
Sbjct: 1   MSK--VTNQYNDDSIQVLEGLEAVRKRPGMYIGSTD-HRGLHHLAYEIVDNAVDEALSGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VT++ DGS +V DNGRG+PT  H   GI   +VI T LHAGGKF Q  YK SGGL
Sbjct: 58  ASKIDVTIHKDGSLSVRDNGRGMPTGKHAS-GIPTIQVIFTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ + R+G +Y  +F   G   + +    +    +GT V FLPS 
Sbjct: 117 HGVGASVVNALSDWLEVEVLRDGVLYTQTFKTGGEKVSSIKKEKTNRKGSGTTVRFLPSK 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   ++Y+TL  RLRE +FL   + I+L D+R+         Y+ GI  F+ YL+  
Sbjct: 177 HIFSTIVWSYETLAERLRESAFLLKGLTITLTDERTDTS--DEFCYEEGIRNFIQYLNEE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L         + D +  + A ++NDGY E +L F NN+  KDGGTH  G+++ALT+ 
Sbjct: 235 KDTLSPIVD-FNSTIDGVETEFAFQYNDGYSETILSFVNNVRTKDGGTHEVGMKTALTKA 293

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG T+++S+++P+   +F  QTK+KL +   RS+V+
Sbjct: 294 FNEYARKVGLLKEKDKNLEGSDVREGLTAIVSLRVPEEILQFEGQTKDKLGTPAARSIVD 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + + + L  +L E+   A+ +++K L A   R+A+R+AR+     +KG      L GKL 
Sbjct: 354 NTIFEHLGIFLTENGEIAQELIRKALKAREAREASRKAREESRNGKKGKKKETLLSGKLT 413

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A    +L ++EI 
Sbjct: 414 PAQGKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKASLSDILKNEEIN 473

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G D F+I    Y KI+IMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 474 TIIYTIGAGVGND-FNIEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 532

Query: 536 IIKPPLYGITRGKSLQYVKDEE---SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           +  PPL+ I++G   + V +        +  I +     +       G ++ + L     
Sbjct: 533 LALPPLFKISKGTGKKQVVEYAWTEKELEEKIKKVGKGYLLQRYKGLGEMNADQLWET-- 590

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               ++   +           +             +     + S +   L       E  
Sbjct: 591 ---TMNPDTRTLIRVVIDDKAQAERRVSTLMGNKVEPRRKWIESHVEFSLEDGKSILETE 647

Query: 653 WHGSINN 659
            H ++N 
Sbjct: 648 GHLTVNE 654



 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 53/64 (82%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D +QA+   S LMG++VEPRR++
Sbjct: 569 KGYLLQRYKGLGEMNADQLWETTMNPDTRTLIRVVIDDKAQAERRVSTLMGNKVEPRRKW 628

Query: 792 IQEN 795
           I+ +
Sbjct: 629 IESH 632


>gi|325978699|ref|YP_004288415.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178627|emb|CBZ48671.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 620

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 264/598 (44%), Positives = 384/598 (64%), Gaps = 6/598 (1%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
            RP MYIG T  E GLHH+++E++DN+IDE+L G+A  I V +  D S TV D+GRGIP 
Sbjct: 1   MRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFATHIEVFIEKDDSITVVDDGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A E + T LHAGGKF    YKVSGGLHGVG SVVNALS+ L + + R G I
Sbjct: 60  DIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVAVHRNGKI 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNS 204
           +   +  G + + L V G   +  GT V F P  +IF+    F++D L  R++EL+FLN 
Sbjct: 120 HYQEYRRGHVVSDLAVIGDT-DRHGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            ++IS+ DKR    +E    Y+GGI ++V +++ +K+ + ++PI   G  D IS+++AM+
Sbjct: 179 GLRISITDKREGIEQEKHYHYEGGISSYVEFINENKEVIFENPIYTDGELDGISVEVAMQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +   YHE V+ F NNI   +GGTH  G R+ALTR I  Y  ++   K+   ++ G+D RE
Sbjct: 239 YTTSYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDNLTGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+S+K P+P+F  QTK KL +SEV  +     ++  S +L E+P  AK IV+K + 
Sbjct: 299 GLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAKKIVEKGIL 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D   +ELF+VEGDSAGGSAK GR 
Sbjct: 359 ASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAGGSAKSGRD 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           RE+QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG G + FD++K RYHK++IMT
Sbjct: 419 REHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAE-FDVSKARYHKLVIMT 477

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DADVDGAHIRTLLLT  +R M  ++  G++YI +PP+YG+  G  ++      + ++  +
Sbjct: 478 DADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGANQEIEL 537

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
            +++         SK  + +      +DD    +  +        +  ++ A  +   
Sbjct: 538 QEAM--ARHSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKI 593



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      +    S+GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 518 KVGSEIKEYIQPGANQEIE-LQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWETTMDPE 575

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LDI
Sbjct: 576 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDI 620


>gi|326442166|ref|ZP_08216900.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064]
          Length = 687

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 280/658 (42%), Positives = 388/658 (58%), Gaps = 22/658 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V
Sbjct: 31  TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIQV 89

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +   E   A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 90  TILADGGVRVVDNGRGIPVGIVPSENKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 149

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + +K +G  +   +  G+   PL        +TGT VTF    DIF   +
Sbjct: 150 VVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEETA-ETGTSVTFWADGDIFETTE 208

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230
           ++++TL  R +E++FLN  + ++L D+R                  + R +T +Y+GGI 
Sbjct: 209 YSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGADTAEEAEQEQVRTVTYYYEGGIV 268

Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I   +GGT
Sbjct: 269 DFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYTEGVYSFANTIHTHEGGT 328

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK KL
Sbjct: 329 HEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREGLTAIISVKLGEPQFEGQTKTKL 388

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E ++ V+  V++ L+ W + +P EA  IV+K + A   R AAR+ARDLTRRKG+L+ 
Sbjct: 389 GNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQAQTARVAARKARDLTRRKGLLES 448

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE+AR DK
Sbjct: 449 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARIDK 508

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L + E+  LI+A GTGI +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  
Sbjct: 509 ILQNTEVQALISAFGTGIHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 567

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+  G +++ +PPLY I  G+        +   D L+     +   +  DS         
Sbjct: 568 LVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQQGKRIREDSIQRFKGLGE 627

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            N  +  +    +              QA          D E   S   + A  + F+
Sbjct: 628 MNAEELRVTTMDVEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 685



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +G+   K I   S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 601 DALVELGKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDDAAQADDLF 660

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 661 SVLMGEDVEARRSFIQRNAKDVRFLDI 687


>gi|225868402|ref|YP_002744350.1| topoisomerase IV subunit B [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701678|emb|CAW99000.1| topoisomerase IV subunit B [Streptococcus equi subsp.
           zooepidemicus]
          Length = 649

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 267/623 (42%), Positives = 393/623 (63%), Gaps = 17/623 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GL+AV+KRP MYIG TD  +GLHH+I+E++DNA+DE+L G
Sbjct: 1   MAKKEISITNYNDDAIQVLEGLEAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + + I VTLN DGS T+SD+GRG+PT  H   GI   +VI T LHAGGKF Q  YK SGG
Sbjct: 60  FGNEIDVTLNKDGSATISDSGRGMPTGQHA-LGIPTVQVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L    +A    +GT VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIATAPKSKSGTRVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  +F ++T+  RL+E +FL  +V+++L D R  +P      Y+ G++ FV+YL+
Sbjct: 179 DDKIFSTTEFKWNTIAERLKESAFLLKTVKMTLTDLRGDDPVVEEFHYENGVQDFVAYLN 238

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L    I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T
Sbjct: 239 EDKETLTP-VIYMEGQEQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +
Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP--GK 413
           VES V++ L+ +L E+   A  +++K + A   R+AARRARD +R             GK
Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGILSGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L     ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++E
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I T++  +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G 
Sbjct: 478 INTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +YI  PPLY ++    + + + Y   +  LED          ++ +     + +      
Sbjct: 537 VYIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGATLQRYKGLGEMNASQLWET 596

Query: 590 FIDDALK--IDKLIKDFYPNHDK 610
            +D   +  I   I D      +
Sbjct: 597 TMDPDTRTLIRVTIDDLARAERR 619



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       ++    N D ++           +    
Sbjct: 461 VLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLL 520

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      + +  +      +  +    G   K++       L+ +     KG ++Q
Sbjct: 521 LTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGATLQ 580

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNASQLWETT++PDTR+L+RV I D ++A+   S LMGD+  PRR++I++N
Sbjct: 581 RYKGLGEMNASQLWETTMDPDTRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 638


>gi|260904977|ref|ZP_05913299.1| DNA gyrase subunit B [Brevibacterium linens BL2]
          Length = 665

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 261/565 (46%), Positives = 362/565 (64%), Gaps = 24/565 (4%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YDA  I +L+GL+AV+KRP MYIG T  E GLHH++ E++DN++DE++ GY   I VT+ 
Sbjct: 9   YDAGDITVLEGLEAVRKRPGMYIGSTS-ERGLHHLVQEIVDNSVDEAMAGYCSHIEVTIL 67

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DG   V D+GRG+P  +H  EG    EVI+T LHAGGKF    Y V+GGLHGVG +VVN
Sbjct: 68  ADGGVRVVDDGRGMPVAMHPTEGKPTVEVILTILHAGGKFGGGGYAVAGGLHGVGSTVVN 127

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L++ ++R+G  + M+F  G+    L   G+  ++TGT VTF P S IF   DF+Y
Sbjct: 128 ALSERLEVEVRRDGYFWNMNFEKGVPTGELTR-GAETSETGTMVTFWPDSTIFETTDFSY 186

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-----------------MFYKGGIEAF 232
           + L+ R ++++FLN  ++ISL D+R  +  +                     Y+ G+  +
Sbjct: 187 EYLRARFQQMAFLNKGMKISLTDERHVQVDDDNVQIDEDEETDAKPREATYHYEHGLLDY 246

Query: 233 VSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           V YL+  KK        I  +     + +S+++AM+W   Y E+V  + N I   +GGTH
Sbjct: 247 VQYLNSTKKADLVHPDVIVFEAEEAEETLSLEIAMQWTTSYSESVHTYANVINTHEGGTH 306

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G R+ALT  I +Y  +    ++   ++ GDD REG T+V+S+K+ DP+F  QTK KL 
Sbjct: 307 EEGFRTALTSLINNYAREQKLLREKDANLTGDDIREGLTAVISVKLGDPQFEGQTKTKLG 366

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEV+  V+  V D L  W+E +P +AK +V+K L AS  R AAR+AR+ TRRKG+L+ +
Sbjct: 367 NSEVKGFVQRVVRDELGHWMESNPAQAKDVVRKGLQASQARLAARKAREATRRKGLLESS 426

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            +PGKL DC  +DP  SE+F+VEGDSAGGSA QGR+   QAILPLRGKILNVE+AR D+ 
Sbjct: 427 GMPGKLKDCQSKDPTISEVFIVEGDSAGGSATQGRNPNTQAILPLRGKILNVEKARLDRA 486

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           L + E+  +ITA GTGIG++ FD+ KLRYHKI++M DADVDG HI TLLLT  FR M  L
Sbjct: 487 LGNNEVQAMITAFGTGIGEE-FDLEKLRYHKIVLMADADVDGQHITTLLLTLIFRYMKPL 545

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYV 553
           I +G++Y+  PPLY I    +    
Sbjct: 546 IEHGYVYLATPPLYRIKWSNAPHEF 570



 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 4/86 (4%)

Query: 722 LLDTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           LL+   + G+   K +++QRYKGLGEMN S+LWETT++PD R L +V + D   AD++F+
Sbjct: 580 LLEAGKAAGKRLPKDMAIQRYKGLGEMNYSELWETTMDPDHRLLKQVSLDDGIVADEIFT 639

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMGD+V+ RR FIQEN+     LDI
Sbjct: 640 VLMGDDVDSRRRFIQENAKDVRFLDI 665


>gi|259500636|ref|ZP_05743538.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners DSM
           13335]
 gi|259168020|gb|EEW52515.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners DSM
           13335]
          Length = 654

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 256/594 (43%), Positives = 367/594 (61%), Gaps = 13/594 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N++YD  SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ GY   I V
Sbjct: 12  NNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGYGKEINV 70

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D GRG+PT +H   G+   EVI+T LHAGGKF +K+Y+ SGGLHGVG S
Sbjct: 71  TIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGLHGVGSS 129

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WLK+R+ R+G  +E  F++ G     L   G+  + TGT +TF P S IFS  
Sbjct: 130 VVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIFSTT 189

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            + Y+T+Q RLRE +FL   V+ +L D+R P+ ++   +  G             K  + 
Sbjct: 190 IYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNEDKDTIG 247

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +G  DNI ++ + ++NDGY ENV+ F NN+   DGG+H +G RS  TR    Y +
Sbjct: 248 DIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRAFNDYAK 307

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV++ + + 
Sbjct: 308 KQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDNIIYEQ 367

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDP 422
           LS +L E+   A+ +V+K   A   R+AA++ARD +R         +  GKL     R+P
Sbjct: 368 LSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTPAQSRNP 427

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           +K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR   +  ++EI T+I  +G
Sbjct: 428 EKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINTMIHTIG 487

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G+G   F+I    Y+KIIIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPLY
Sbjct: 488 AGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYIALPPLY 546

Query: 543 GITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            + +G+     ++Y   +E L+  +        ++ F     + +       ++
Sbjct: 547 KLEKGQGKNVEIKYSWTDEELQKDVKEFGKGYSLQRFKGLGEMNADQLWETTMN 600



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 5/117 (4%)

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738
           F +      I + R+      +  L    G  ++I        L   +   G KG S+QR
Sbjct: 524 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVEIKYSWTDEELQKDVKEFG-KGYSLQR 582

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+   + LMGD+V  RR++I EN
Sbjct: 583 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAERRVTTLMGDKVAARRKWIDEN 639


>gi|160914998|ref|ZP_02077211.1| hypothetical protein EUBDOL_01005 [Eubacterium dolichum DSM 3991]
 gi|158432797|gb|EDP11086.1| hypothetical protein EUBDOL_01005 [Eubacterium dolichum DSM 3991]
          Length = 643

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 252/602 (41%), Positives = 359/602 (59%), Gaps = 15/602 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++ +    YD  SIQIL GL+AV+KRP MYIG TD   GLHH+++E++DN+IDE+L GY
Sbjct: 1   MAEKV----YDGSSIQILDGLEAVRKRPGMYIGSTDR-RGLHHLVWEIVDNSIDEALNGY 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF-NQKSYKVSGG 119
            D I +TL       V D+GRG+P D+H   G+ A +VI T LHAGGKF ++  YK SGG
Sbjct: 56  GDTIRITLEEGDVICVEDHGRGMPVDMHAS-GVPAVQVIYTVLHAGGKFTSEGGYKTSGG 114

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALS W+++ I R+G I+++ F + G     L V G   N TG+ V F   
Sbjct: 115 LHGVGASVVNALSEWVEVTIHRDGKIHQIRFEDGGSKVGKLKVLGKT-NKTGSIVRFKAD 173

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS   +++  +  R +E +FL   + + + D+R  + RE+   Y  G+ AF+ YL  
Sbjct: 174 KHIFSTTKYSFSQIAERAQEDAFLLEGLCLEVRDERVGKEREVRYHYANGLTAFMDYLHE 233

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+   Q      G  ++I +D A ++ D Y EN+  F N +  KDGGTH +G ++A T+
Sbjct: 234 DKQTFHQPVA-FSGMVNDIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNAFTK 292

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  ++   K   ++  G D REG T +LS+ +P+   +F  QTK KL + E ++ V
Sbjct: 293 VFNEYARRNGILKDKDKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTPEAKNAV 352

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKL 414
           +  V++ LS WLEE+   A  ++KK+  AS  R+AAR+AR+  R+      +   L GKL
Sbjct: 353 DQLVSEKLSFWLEENKELALTLIKKMQRASQAREAARKAREDARKGKAKGKSEKILSGKL 412

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           A    +D +K EL+LVEGDSAGGSAKQGR    QAILPLRGK+LN E+A    +  ++E+
Sbjct: 413 ASAQSKDARKKELYLVEGDSAGGSAKQGRDSRYQAILPLRGKVLNTEKASIANIEKNEEL 472

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I ALG G+G + F      YHK+IIMTDAD DGAHI+TLLLTFF+R M  LI  G +
Sbjct: 473 NTIIHALGAGVGAN-FHAEDASYHKVIIMTDADTDGAHIQTLLLTFFYRYMKELIEKGMV 531

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI  PPLY + +GK +QY   +E L+           ++ +     + +       +  A
Sbjct: 532 YIALPPLYKLQKGKEIQYAWSDEELDRIRKTFPKGYTLQRYKGLGEMNADQLWETTMSPA 591

Query: 595 LK 596
            +
Sbjct: 592 TR 593



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 3/261 (1%)

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +    +  + R    +    +   +          E  L        SK+  +  +    
Sbjct: 370 LALTLIKKMQRASQAREAARKAREDARKGKAKGKSEKILSGKLASAQSKDARKKELYLVE 429

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
                         +      +   V N E     N+    +L   ++ +      ++H 
Sbjct: 430 GDSAGGSAKQGRDSRYQAILPLRGKVLNTEKASIANIEKNEELNTIIHALGAGVGANFHA 489

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKI 714
              +   ++           +   + + +F  +Y +    + +    L  L  +  G +I
Sbjct: 490 EDASYHKVIIMTDADTDGAHI--QTLLLTFFYRYMKELIEKGMVYIALPPLYKLQKGKEI 547

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           +       LD I     KG ++QRYKGLGEMNA QLWETT++P TR+L++V I DA  A+
Sbjct: 548 QYAWSDEELDRIRKTFPKGYTLQRYKGLGEMNADQLWETTMSPATRTLIQVTIDDAFLAE 607

Query: 775 DLFSRLMGDEVEPRREFIQEN 795
              S LMGD+ + RR +I++N
Sbjct: 608 KRVSVLMGDKADVRRTWIEDN 628


>gi|254393574|ref|ZP_05008707.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064]
 gi|197707194|gb|EDY53006.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064]
          Length = 686

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 280/658 (42%), Positives = 388/658 (58%), Gaps = 22/658 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V
Sbjct: 30  TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIQV 88

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +   E   A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 89  TILADGGVRVVDNGRGIPVGIVPSENKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 148

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + +K +G  +   +  G+   PL        +TGT VTF    DIF   +
Sbjct: 149 VVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEETA-ETGTSVTFWADGDIFETTE 207

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230
           ++++TL  R +E++FLN  + ++L D+R                  + R +T +Y+GGI 
Sbjct: 208 YSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGADTAEEAEQEQVRTVTYYYEGGIV 267

Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I   +GGT
Sbjct: 268 DFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYTEGVYSFANTIHTHEGGT 327

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK KL
Sbjct: 328 HEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREGLTAIISVKLGEPQFEGQTKTKL 387

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E ++ V+  V++ L+ W + +P EA  IV+K + A   R AAR+ARDLTRRKG+L+ 
Sbjct: 388 GNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQAQTARVAARKARDLTRRKGLLES 447

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE+AR DK
Sbjct: 448 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARIDK 507

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L + E+  LI+A GTGI +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  
Sbjct: 508 ILQNTEVQALISAFGTGIHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 566

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+  G +++ +PPLY I  G+        +   D L+     +   +  DS         
Sbjct: 567 LVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQQGKRIREDSIQRFKGLGE 626

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            N  +  +    +              QA          D E   S   + A  + F+
Sbjct: 627 MNAEELRVTTMDVEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 684



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +G+   K I   S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 600 DALVELGKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDDAAQADDLF 659

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 660 SVLMGEDVEARRSFIQRNAKDVRFLDI 686


>gi|167755161|ref|ZP_02427288.1| hypothetical protein CLORAM_00666 [Clostridium ramosum DSM 1402]
 gi|167705211|gb|EDS19790.1| hypothetical protein CLORAM_00666 [Clostridium ramosum DSM 1402]
          Length = 641

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 287/639 (44%), Positives = 407/639 (63%), Gaps = 11/639 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+     SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSEEKVEHSYDESDIQVLEGLEAVRKRPGMYIG-TTSIRGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L  D    V D+GRG+PT  H + GIS  E I T LHAGGKF    YKVSGGL
Sbjct: 60  ASHIRVILKDDDVVQVIDDGRGMPTGTHAKTGISTVETIFTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ + R+G+ Y   F N G     L + G + + TGT VTF    
Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHEYYQRFENGGKPAGELKIIGDS-DITGTIVTFKADK 178

Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF     ++YDTL+ R+REL+FLN  +++SL D+R+   R+   +Y+GGI+ +V+Y+++
Sbjct: 179 IIFKEGTVYDYDTLRQRIRELAFLNKGLRLSLEDQRNGVDRKHEYYYEGGIKEYVAYINK 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+ +  I ++  +  I+I++ M++NDGY  N+  F NNI   +GGTH  G R ALTR
Sbjct: 239 NKTPIHEEIIYVEDMQQEITIEVGMQYNDGYQSNIYSFCNNINTHEGGTHEEGFRLALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y +     KKD+ ++ GDD REG T+++S+K PDP++  QTK KL ++EVR +  +
Sbjct: 299 VINNYAKSKGLLKKDEEALSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIASN 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            ++  L  +L E+P  AKIIV K + A+  R AA++AR++TRRK VL++++LPGKLADCS
Sbjct: 359 IISASLDKFLLENPDTAKIIVDKAIVAARARMAAKKAREMTRRKNVLEVSNLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  + E+F+VEGDSAGGSAK GR R  QAILPLRGKILNVE++R +K+L + EI ++I
Sbjct: 419 SKDASECEIFIVEGDSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG++ F+++KLRYHKI+IMTDADVDG HIR L+LTF +R +  L+  GF+Y  +
Sbjct: 479 TAFGTGIGEE-FNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLRPLVEGGFVYAAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKI 597
           PPLY +  GK   Y   +E L+D         +         G ++   L         +
Sbjct: 538 PPLYLLKHGKDEYYCYSDEELDDLKTKIGEGAKYSIQRYKGLGEMNAEQLWET-----TM 592

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           D   +          +E  +I  +   E  +     +  
Sbjct: 593 DPEKRILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQE 631



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 6/128 (4%)

Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNGDKIKITGPCSL--LDTIFSIGRKGISM 736
            + +F  +Y R       +      +  L    D+        L  L T    G K  S+
Sbjct: 515 LMLTFLYRYLRPLVEGGFVYAAQPPLYLLKHGKDEYYCYSDEELDDLKTKIGEGAK-YSI 573

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P+ R L ++ + +A +AD +F  LMG++VEPRREFIQEN+
Sbjct: 574 QRYKGLGEMNAEQLWETTMDPEKRILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQENA 633

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 634 KYVTDLDI 641


>gi|241896016|ref|ZP_04783312.1| DNA topoisomerase IV subunit B [Weissella paramesenteroides ATCC
           33313]
 gi|241870747|gb|EER74498.1| DNA topoisomerase IV subunit B [Weissella paramesenteroides ATCC
           33313]
          Length = 675

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/672 (37%), Positives = 383/672 (56%), Gaps = 15/672 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + + Y  DSI +L+GL+AV+KRP MYIG TD   GLHH++YE+ DNA+DE+L GY D I
Sbjct: 2   TKKNDYSDDSITVLEGLEAVRKRPGMYIGSTD-GKGLHHLVYEIFDNAVDEALAGYGDEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ + + TV D+GRG+P  +H   G    EVI+T LHAGGKF Q  YK SGGLHGVG
Sbjct: 61  NVTIHENNAITVVDHGRGMPVGMHSS-GKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSS L + I R+G  Y+  FIN G  D  L   G     +GT VTF P S IFS
Sbjct: 120 SSVVNALSSDLVVTIVRDGVKYQEHFINGGHPDGTLKKIGKTKETSGTTVTFKPDSKIFS 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +N++TL  RLRE +FL  +V+I+L D+R  + +  T  +  GI+AFV YL+   K  
Sbjct: 180 TTIYNFNTLAERLRESAFLLRNVKITLTDERPGQEQTETYHFPEGIKAFVDYLNED-KDT 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +   +  +G    + ++++ ++NDG+ E ++ F NN+   DGGTH +GLRSA T+    Y
Sbjct: 239 LGDIMYFEGIAQGVEVEVSAQYNDGFSETMMSFVNNVRTPDGGTHEAGLRSAWTKAFNEY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             +    K+  +++ G D REG ++V+S+++P+   +F  QTKEKL + E R++V++ + 
Sbjct: 299 ARRVNLLKEKDKNLEGSDVREGLSAVISLRIPENILQFEGQTKEKLGTPEARTIVDNIIT 358

Query: 362 DGLSAWLEEHPLEAKIIVKKV--LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + L  +L E+   ++ +++K      +       R    + +K       L GKL     
Sbjct: 359 EQLGFYLMENGEFSQSLIRKSLRAREAREAARKARDEARSGKKKGKSERLLSGKLTPAQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++  ++ELFLVEGDSAGGSAKQGR+R+ QAILPLRGK+LN E+A+   ++ ++EI T+I 
Sbjct: 419 KNANQNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIMKNEEISTIIY 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F +    Y KIIIMTDAD DGAHI+TLLLTFF++ M  LI  G +YI  P
Sbjct: 479 TIGAGVG-PEFKVADANYDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIDAGKVYIALP 537

Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           PLY +     + + ++Y   +  L            ++ F     + ++      +D   
Sbjct: 538 PLYMLRKGKGKQQKIEYAWTDSQLATAEETIGRGYTLQRFKGLGEMNAEQLWATTMDPTQ 597

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           +    +K       +  +   +  G       + I  ++A  L    + + +++ +    
Sbjct: 598 RTLIRVKIDDAMLAEKRVTTLM--GDKVEPRRKWIESNVAFNLVEEGDTLLDEAAQGEEL 655

Query: 656 SINNSDILVKRI 667
              + + +   I
Sbjct: 656 DSQSKEFVAPII 667



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    +++  +  I       +  +  N D ++           +    
Sbjct: 456 VLNTEKAKLQDIMKNEEISTIIYTIGAGVGPEFKVADANYDKIIIMTDADDDGAHIQTLL 515

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I + ++      +  L    G + KI        L     +IGR G ++
Sbjct: 516 LTFFYKYMRPLIDAGKVYIALPPLYMLRKGKGKQQKIEYAWTDSQLATAEETIGR-GYTL 574

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QR+KGLGEMNA QLW TT++P  R+L+RVKI DA  A+   + LMGD+VEPRR++I+ N
Sbjct: 575 QRFKGLGEMNAEQLWATTMDPTQRTLIRVKIDDAMLAEKRVTTLMGDKVEPRRKWIESN 633


>gi|149177758|ref|ZP_01856358.1| DNA gyrase subunit B [Planctomyces maris DSM 8797]
 gi|148843408|gb|EDL57771.1| DNA gyrase subunit B [Planctomyces maris DSM 8797]
          Length = 643

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/574 (41%), Positives = 343/574 (59%), Gaps = 10/574 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y AD I++L+GL+AV++RPSMYIG  D   GLHH+++E++DN++DE L   A
Sbjct: 5   AKTTGAKKYSADDIEVLEGLEAVRRRPSMYIGGVD-IRGLHHLLWEIVDNSVDEYLAKEA 63

Query: 62  DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           D I VTL+ DG SC+V DNGRGIP D H +   SA E+I+T LHAGGKF+ K+Y  SGGL
Sbjct: 64  DTIIVTLHKDGASCSVKDNGRGIPVDKHSKTKKSALELILTTLHAGGKFSDKNYARSGGL 123

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ +   + R+G+ Y   +  G    P+          GTE+ F P  D
Sbjct: 124 HGVGSSVVNALSTEMVATVVRDGHQYVQRYKKGKPTTPVKKVKP-FRGHGTEIYFRPDDD 182

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--LDR 238
           IF    FN DT++  L +++F++  ++I+  D+   E     + +  GI  ++     ++
Sbjct: 183 IFRRVHFNADTIRQHLEDVAFIHGGLKITFRDEVKKETH--ELSHPEGIRGYLEKLTQEQ 240

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            KKP+ +     +    NI +++ +RW D   E +  + N I    GGTH SGLRS + +
Sbjct: 241 QKKPVHEQLFFAEKEDKNIRVEMVLRWTDATDEQIRSYVNGIRTHAGGTHESGLRSGIAK 300

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y++     K    ++  DD REG   ++S+   DP F  QTKEKL + EV   VE 
Sbjct: 301 AVKNYMDVHN-IKHKGLAITTDDIREGVLCLISVFHNDPMFQGQTKEKLNNPEVSGFVEG 359

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGKLADC 417
            V   L  WL ++P  A  +V +++ A+  R A+R A+   RRK V +  ++LPGKL DC
Sbjct: 360 IVRPLLETWLNQNPSIADAVVGRIVLAARARMASRDAQKEVRRKSVTNRKSTLPGKLLDC 419

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
               P++SELFLVEG SAGG+A  GR    QA+LPLRGK+LN E     K++ +QEI  L
Sbjct: 420 RSNKPEESELFLVEGLSAGGTAAMGRDSRIQAVLPLRGKVLNTESLAISKIMGNQEIKDL 479

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           +  LGTGIG  +F+I  LRY++II++ DAD DG HI TLLLTFFFR M  LI  G L++ 
Sbjct: 480 VETLGTGIG-PNFEIMNLRYNRIILLMDADSDGYHISTLLLTFFFRHMRELIRQGKLFLA 538

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           +PPLY I  G    Y +D+   E+ + +   + +
Sbjct: 539 QPPLYCIKVGNEKHYAQDDAQKEEIVESLGANRK 572



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG-R 731
               L  +  F    +  R    ++      +  +    +K          + + S+G  
Sbjct: 513 HISTLLLTFFFRHMRELIRQ--GKLFLAQPPLYCIKVGNEKHYAQDDAQKEEIVESLGAN 570

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +   + R+KGLGEM AS+L ETTL+P  R LL+V I    +AD  F++L G +   R + 
Sbjct: 571 RKYEIGRFKGLGEMTASELKETTLDPKHRVLLKVDIDSQLEADATFAQLFGKDASLRYDL 630

Query: 792 IQENSLPSALDI 803
           I + ++ +  DI
Sbjct: 631 IMQEAIEAD-DI 641


>gi|324039430|dbj|BAJ78468.1| DNA gyrase subunit B [Alcanivorax sp. ST-TA]
          Length = 476

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 295/478 (61%), Positives = 374/478 (78%), Gaps = 4/478 (0%)

Query: 32  IGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE 91
           IGDTD  +GLHHM++EV+DN+IDE+L G+   I V ++ D S ++ DNGRGIPT++H+EE
Sbjct: 1   IGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEIKVVIHPDESMSIQDNGRGIPTEMHEEE 60

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151
           G+SAAEVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + 
Sbjct: 61  GVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYN 120

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+   PL V G   + +GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+
Sbjct: 121 HGVPAKPLEVVG-TTDSSGTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLM 179

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYH 270
           D+RS +       Y+GG+ AFVSYL+ +K PL Q      +   D I++++AM+WND Y 
Sbjct: 180 DERSGDE--DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQ 237

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY++K    KK+K S  GDD REG T+V+
Sbjct: 238 ENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVI 297

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP+FSSQTK+KLVSSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RD
Sbjct: 298 SVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARD 357

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR++TRRKG LDIA LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAI
Sbjct: 358 AARKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAI 417

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           LPL+GKILNVE+ARFDKMLSSQE+GTLITALG GIG+D ++I KLRYH+IIIMTDADV
Sbjct: 418 LPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIMTDADV 475


>gi|313635495|gb|EFS01732.1| DNA gyrase, B subunit [Listeria seeligeri FSL N1-067]
          Length = 528

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 268/531 (50%), Positives = 368/531 (69%), Gaps = 10/531 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS++L++ + REG  Y   F  G +   +   G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTYLEVYVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IFS    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFSETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S+ +   ++ L+ ++ E+P  AK IV+K + AS  R AA+RAR++ R+   L+I+SLPGK
Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P+ SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++L+++E
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           I T  TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R 
Sbjct: 479 IRTXFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRY 528


>gi|219121994|ref|XP_002181340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407326|gb|EEC47263.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 727

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 257/617 (41%), Positives = 370/617 (59%), Gaps = 30/617 (4%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + ++   SY A  I +LKGLD V+KRP MYIG T G  GLHH+++EV+DN +DE+L G+A
Sbjct: 58  ASSVAAQSYGAGQITVLKGLDPVRKRPGMYIGST-GPDGLHHLVWEVVDNCVDEALAGHA 116

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ----KSYKVS 117
             +T T++ DGS TV+D+GRGIPTDLH E G SA E ++T LHAGGKF+       YKVS
Sbjct: 117 TFVTTTIHADGSLTVTDDGRGIPTDLHSETGKSALETVLTELHAGGKFDNQGSNSGYKVS 176

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-----AGNDTGTE 172
           GGLHGVG+SVVNALS ++ +++ R   +Y+M F  G+   PL          +   +GT 
Sbjct: 177 GGLHGVGISVVNALSEFVHVKVDRTPELYQMRFERGVPTGPLQNLDKLKTLLSKRKSGTS 236

Query: 173 VTFLPSSDIFSVQDFNYDTL------QHRLRELSFLNSSVQISLIDKR--SPEPREITMF 224
           VTFLP   +F   +   D        + R+ E+++LN+ + ++L D+R      R    +
Sbjct: 237 VTFLPDLKVFKGDNGKPDITFDSSRLKGRMDEIAYLNAGLVLTLKDERKSPGRGRLQVFY 296

Query: 225 YKGGIEAFVSYLDRHKKPLMQ------SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFT 277
           + GG+  +   L R K PL Q           +  +D+ S D A+RW+ D Y E++L F 
Sbjct: 297 HAGGLAEYAELLCRTKTPLFQGTTSSRKKKPARKQKDSASDDDALRWSSDMYAESILSFC 356

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNI  +DGG+H+ GL++ LTR +    ++S  +K+   ++ G+  REG T+++S+ + +P
Sbjct: 357 NNIRTRDGGSHVEGLKACLTRTVNQAAKRSNKAKEGAANLPGEFIREGLTAIVSVSVSEP 416

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
            F  QTK +L + EVR  V+S ++  L+   +  P     I  K   A     AA+ ARD
Sbjct: 417 EFEGQTKGRLGNPEVRPAVDSLLSAELTKLFDFRPEILDAIYNKASSAQAAAAAAKAARD 476

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           + RRK +L    LPGKLADC+ RDP++SE+F+VEGDSA GSAKQGR R  QAILPLRGKI
Sbjct: 477 MVRRKTLLTSTILPGKLADCASRDPEESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKI 536

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LN+ERA  +++  + E+  LI+ALG G+    FD   LRY +I+IMTDADVDGAHIR LL
Sbjct: 537 LNIERAATERIYQNTELQGLISALGLGVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLL 596

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLIN-QSLSEEI 572
           LTFF+R    L+ NG +YI +PPLY ++    R +   Y  ++      ++   +  +  
Sbjct: 597 LTFFYRYQRELVENGHVYIAQPPLYKVSVGSGRSRKEGYAFNDTERNTVMMQALAAGKVS 656

Query: 573 ELFCDSKGVISKNDLRN 589
                  G +    L +
Sbjct: 657 LQRFKGLGEMMPEQLWS 673



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 5/79 (6%)

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
            + G+  +S+QR+KGLGEM   QLW TT++P+ R++L+V + DAS AD   S LMGD V 
Sbjct: 650 LAAGK--VSLQRFKGLGEMMPEQLWSTTMDPERRTMLQVTVNDASMADQTLSILMGDTVA 707

Query: 787 PRREFIQENS--LPS-ALD 802
           PR+EFI   +  L    LD
Sbjct: 708 PRKEFISTQAETLRVDDLD 726


>gi|283457093|ref|YP_003361656.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18]
 gi|283133071|dbj|BAI63836.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18]
          Length = 713

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 274/667 (41%), Positives = 381/667 (57%), Gaps = 34/667 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           Q   Y A  I +L+GL+AV+KRP MYIG T  E GLHH++YEV+DN++DE+L GYA  I 
Sbjct: 45  QQHEYGASDITVLEGLEAVRKRPGMYIGST-TERGLHHLVYEVVDNSVDEALAGYASKID 103

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+  DG+  V D+GRGIP D H  E  S  EV+MT LHAGGKF    Y VSGGLHGVG+
Sbjct: 104 VTIQADGAVRVEDDGRGIPVDEHPTEHKSTVEVVMTVLHAGGKFGGGGYSVSGGLHGVGI 163

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALS+ +   + R+G  + +SF N G+ D PL   G   + TGT  TF P  +IF  
Sbjct: 164 SVVNALSTRVITEVHRQGYAWHISFSNGGVPDGPLRK-GEPSDKTGTIQTFYPDPEIFET 222

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI----------------------- 221
            +F+++TL+ R ++++FLN  + I+L D+R     +                        
Sbjct: 223 VEFDFETLRARFQQMAFLNKGLTITLTDEREKFVGDEVAEESEKKENILNRVHANAEGFT 282

Query: 222 --TMFYKGGIEAFVSYLDRH-KKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCF 276
             T  Y  G+  +V +L+   K  + +  +  +      N+S+++AM+W   Y E+V  +
Sbjct: 283 TVTYRYDNGLFDYVHFLNAGAKTIVNEEIVSFEAEDTERNMSLEVAMQWTGAYKESVYSY 342

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G R+ALT  +  Y  ++   +    ++ G+D REG T+V+SIK+ +
Sbjct: 343 ANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTAVISIKISE 402

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SE +S  +  VND L  W   +P  AK IV++ + A+  R AAR+AR
Sbjct: 403 PQFEGQTKTKLGNSEAKSFTQREVNDHLGDWFGRNPAVAKDIVRRAITAAQARIAARKAR 462

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           + TRRKG+L+ +S+PGKL DCS +DP  SE++LVEGDSAGGSA QGR    QAILPLRGK
Sbjct: 463 ETTRRKGLLETSSMPGKLKDCSSKDPSISEIYLVEGDSAGGSAVQGRDPNTQAILPLRGK 522

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERAR D+ LS+ EI  +ITA GTGIG D FDI K RYHKI++M DADVDG HI TL
Sbjct: 523 ILNVERARLDRALSNAEIQAMITAFGTGIG-DDFDIEKARYHKIVLMADADVDGQHITTL 581

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELF 575
           LLT  FR M  LI  G++Y+ +PPLY I    +   YV  +   ++ L   +        
Sbjct: 582 LLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVYSDAERDEALARGAAKNLRLPK 641

Query: 576 CDSKGVISKNDLRNFIDDA-LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
            +           ++ +     +D   +       +       I  V   E  +     +
Sbjct: 642 DNGIQRYKGLGEMDYTELWDTTMDPARRTLLQVKMEDAAAADQIFSVLMGEDVEARREFI 701

Query: 635 ASKLANR 641
                + 
Sbjct: 702 QQNAKDI 708



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LW+TT++P  R+LL+VK+ DA+ AD +FS LMG++VE RREFIQ+N
Sbjct: 645 IQRYKGLGEMDYTELWDTTMDPARRTLLQVKMEDAAAADQIFSVLMGEDVEARREFIQQN 704

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 705 AKDIRFLDI 713


>gi|227893710|ref|ZP_04011515.1| DNA topoisomerase IV subunit B [Lactobacillus ultunensis DSM 16047]
 gi|227864570|gb|EEJ71991.1| DNA topoisomerase IV subunit B [Lactobacillus ultunensis DSM 16047]
          Length = 648

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 264/605 (43%), Positives = 371/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  +YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 3   KAHTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 62  VTIHKDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F N G     L   G   + TGT +TF P   IFS 
Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCLGKTKDKTGTTITFKPDDSIFST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R PE       Y  GI++FVSYL+   K  +
Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDEREPE-HHDIFKYDDGIKSFVSYLNEG-KGTI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ A +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 239 SDVFYFEGKQDGMEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V +
Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F++N   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPL
Sbjct: 479 GAGVG-TEFNVNDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKVYIALPPL 537

Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y +     +   +QY   +E L +          ++ F     + ++   +  +D   ++
Sbjct: 538 YRLQKGRGKKSKVQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMDPESRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++ + +N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVNDSNYDKVIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I   ++      +  L    G K K+        L +    +GR G S+
Sbjct: 514 LTFFYRYMRPMIEKGKVYIALPPLYRLQKGRGKKSKVQYAWTDEELAEDEKKMGR-GYSL 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QR+KGLGEMNA QLW+TT++P++R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 573 QRFKGLGEMNAEQLWQTTMDPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631


>gi|16082085|ref|NP_394515.1| DNA gyrase subunit B [Thermoplasma acidophilum DSM 1728]
 gi|10640369|emb|CAC12183.1| probable DNA gyrase, subunit B (gyrB) [Thermoplasma acidophilum]
          Length = 641

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 261/596 (43%), Positives = 372/596 (62%), Gaps = 18/596 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD+  IQIL+GL AV+K P MYIG TD   GLHH++YEV+DN++DES+ GY   I
Sbjct: 1   MTEDNYDSSQIQILEGLKAVRKVPGMYIGSTD-TRGLHHLVYEVVDNSVDESVAGYCSRI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +  DGS TV D+GRGIP D+H +      E+++T LH+G KF++K YK++GGLHGVG
Sbjct: 60  YVVMGSDGSITVEDDGRGIPVDIHPKYNRPGLEIVLTELHSGAKFDKKVYKITGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----------TGSAGNDTGTEV 173
           V VVNALS  L   +KR+G IY   F  GI  + L                   D GT +
Sbjct: 120 VHVVNALSKKLIAVVKRDGKIYYDIFEQGIPVSGLKTASDVSEIEKLGIKIQFPDHGTII 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P  DIF   +F+Y+T+  RL +LS+LN  + I+ +D+ S   RE  + ++GG+   V
Sbjct: 180 KFYPDPDIFETTEFSYETILARLTDLSYLNPQLTITFLDEASG--REDVLHHEGGLIELV 237

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L   K+ LM  P+ ++   D+  ++ ++ +     E ++ F NNI   +GGTH++G  
Sbjct: 238 RHLSEGKEVLM-DPLYLKEEVDSHMVEFSLLYTTDVQETLMSFVNNISTPEGGTHVAGFH 296

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L+R I  Y   +   K  +  + GDD +EG  +VL +KM +P+F  QTK KL +S VR
Sbjct: 297 QGLSRAIQDYARSNNKIKGVE-DITGDDVKEGVIAVLHVKMQNPQFEGQTKSKLGNSSVR 355

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V+S  +  +  ++E +P  A +I+ +VL A+  R+A+R+A++L RRK  L+   LPGK
Sbjct: 356 GIVQSVTSKFMKTFMETNPHVADVIIGRVLSAAAAREASRKAKELVRRKSALEGGGLPGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  DP  SEL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNVE+A   K++ ++ 
Sbjct: 416 LADCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKVVENEI 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  L+ A+GTG+ +D  +  KLRY KIIIMTDADVDGAHIRTLLLTFFFR   SLI NG 
Sbjct: 476 IHDLVVAIGTGVKEDL-NPKKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSLIENGN 534

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           ++  +PPLY I +G++++YV  +E  E        +  I       G ++   L  
Sbjct: 535 VFFAEPPLYRIQKGQNVRYVYSDEEKEQVSREFGPN-AIIQRFKGLGEMNPEQLWE 589



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 15/236 (6%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
                   +S+  I + D         +  +             +E+A    V   E   
Sbjct: 418 DCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKVVENEIIH 477

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
           ++ V++ + +   LN    +  K    +  + D    R               + +F  +
Sbjct: 478 DLVVAIGTGVKEDLNPKKLRYGKIIIMTDADVDGAHIRT-------------LLLTFFFR 524

Query: 689 YKRIFSNRIEENYLTILSL-ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747
           Y R         +       I  G  ++        + +         +QR+KGLGEMN 
Sbjct: 525 YARSLIENGNVFFAEPPLYRIQKGQNVRYVYSDEEKEQVSREFGPNAIIQRFKGLGEMNP 584

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            QLWETT+NP TR L++V I DA +A+ +F+ LMG++VEPRR+FI+EN++ +  +D
Sbjct: 585 EQLWETTMNPKTRKLVQVTIEDAEEAERIFTILMGEKVEPRRKFIEENAVYAENID 640


>gi|325066318|ref|ZP_08124991.1| DNA gyrase subunit B [Actinomyces oris K20]
          Length = 675

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 282/649 (43%), Positives = 385/649 (59%), Gaps = 35/649 (5%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MSD     N  Y A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L 
Sbjct: 1   MSDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I VT+  DG   VSDNGRGIP D H  E     EV+MT LHAGGKF    Y VSG
Sbjct: 60  GYCDHIEVTILADGGVRVSDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLP 177
           GLHGVG+SVVNALS+ +   ++R+G ++ MSF + G     L V G A + TGT  TF P
Sbjct: 120 GLHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITEL-VKGEATDSTGTTQTFYP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--------------------RSPE 217
              IF   DF+Y+TL+ R ++++FLN  ++I+L D+                        
Sbjct: 179 DPTIFETVDFDYETLRRRFQQMAFLNKGLRITLTDERLGVQDAGDEIAGDDSAPDAPEVG 238

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQ-----GSRDNISIDLAMRWNDGYH 270
            R  +  Y+ G+  +V++L++ KK        I  +     G   +IS+++AM+W   Y 
Sbjct: 239 FRTDSYCYEHGLRDYVAFLNKSKKAELVHPEIIDFEAEQSLGENHSISLEIAMQWTSAYS 298

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  + N I   +GGTH  G R+ALT  +  Y       K+   ++ GDD REG T+V+
Sbjct: 299 ESVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVI 358

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ +P+F  QTK KL ++E R+ V+  V   L  WL+ HP +A+ I+ K   A+  R 
Sbjct: 359 SVKLSEPQFEGQTKTKLGNTEARTFVQQTVYAQLGDWLDSHPGDARAIITKASQAAAARL 418

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+ TRRKGVL+ AS+PGKL DCS ++   SE+F+VEGDSAGGSA  GR  E+QAI
Sbjct: 419 AARKAREATRRKGVLESASMPGKLRDCSSKNAADSEIFIVEGDSAGGSAVGGRDPEHQAI 478

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           +P+RGKILNVE+AR D+ LSS  I +LITA GTGIG+D FDI KLRY KI+IM DADVDG
Sbjct: 479 MPIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDIAKLRYGKIVIMADADVDG 537

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            HI TLLLT  FR M  LI +G  YI  PPLY +    +       ++  D L+     +
Sbjct: 538 QHIATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAAGQEK 597

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
              L  D    I +      ++D    +  +        +  +++A  +
Sbjct: 598 GRRLPKDGG--IQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADA 644



 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 8/88 (9%)

Query: 724 DTIFSIG-RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G  KG        +QRYKGLGEMN  +LWETT++P TR L +V + +A+ AD+ 
Sbjct: 588 DKLLAAGQEKGRRLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADADET 647

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           F+ LMGD+VE RR FIQ N+     LDI
Sbjct: 648 FAILMGDDVEQRRSFIQRNASDVRFLDI 675


>gi|161507592|ref|YP_001577546.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus DPC 4571]
 gi|160348581|gb|ABX27255.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus DPC 4571]
          Length = 653

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 260/605 (42%), Positives = 375/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 8   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 66

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S T+ D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 67  VTIHKDNSVTIRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 125

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F   G     L   G   + TGT +TF P + IFS 
Sbjct: 126 SVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFST 185

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R PE       Y  GI++FVSYL+   K  +
Sbjct: 186 TKYKYETIQERIRESAFLLKGVKFVLTDERDPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 243

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ + +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 244 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 303

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V +
Sbjct: 304 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 363

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 364 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 423

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 424 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 483

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G + F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPL
Sbjct: 484 GAGVGAE-FNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKIYIALPPL 542

Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y + +G+     +QY   +E L +          ++ F     + ++   +  ++   ++
Sbjct: 543 YRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 602

Query: 598 DKLIK 602
              +K
Sbjct: 603 LIRVK 607



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 459 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILL 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      I   +I      +  L    G K +I        L       ++G S+Q
Sbjct: 519 LTFFYRYMRPMIEKGKIYIALPPLYRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQ 578

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+   + LMGD+V  RR++I++N
Sbjct: 579 RFKGLGEMNAEQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEKN 636


>gi|261406137|ref|YP_003242378.1| DNA topoisomerase IV subunit B [Paenibacillus sp. Y412MC10]
 gi|329924920|ref|ZP_08279867.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. HGF5]
 gi|261282600|gb|ACX64571.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. Y412MC10]
 gi|328940304|gb|EGG36633.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. HGF5]
          Length = 659

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 263/601 (43%), Positives = 368/601 (61%), Gaps = 25/601 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S YDAD IQ+L+GL AV+KRP MYIG T   SGLHH+++E++DNA+DE L  Y   I
Sbjct: 17  TNRSGYDADDIQVLEGLVAVRKRPGMYIGSTSS-SGLHHLVWEIVDNAVDEHLAKYCSRI 75

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            +TL+ DGS TV DNGRGIPT +H + GI   +V+ T LHAGGKF    YK SGGLHGVG
Sbjct: 76  EITLHKDGSATVYDNGRGIPTGMH-KTGIPTPQVVFTILHAGGKFGGSGYKKSGGLHGVG 134

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGTEVT 174
            SV NALS WL++ I REG I+   F            G     L V G+  N TGT++T
Sbjct: 135 ASVTNALSEWLEVEIYREGKIHRQRFEYWQDKKGKEHVGEPVTGLEVLGNT-NKTGTKIT 193

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P + +F+     NYDTL  RL+E++FLNS ++I L D+RS        FY+GG   FV
Sbjct: 194 FKPDARVFTSGTHLNYDTLAERLQEIAFLNSGLRIVLKDERSG--NGEEFFYEGGASQFV 251

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+  K  L    I     +D+I +++A+++N GY E +  F N+IP + GGTH +G +
Sbjct: 252 QFLNEGKDVLH-DVIHFYAEKDDIEVEIALQYNAGYTETLASFVNSIPTRGGGTHETGFK 310

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A TR +  Y  K+   K+  +++ G+D REG  +V+S+KM +  F  QTK++L S+  R
Sbjct: 311 TAYTRVMNDYARKNNLLKEKDKNLEGNDLREGMMTVISVKMAEVEFVGQTKDQLGSASAR 370

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPG 412
           S V+S V + +  +LEE+P  A+ ++KK + AS  R+AAR+ARD  R  K   + ++L G
Sbjct: 371 SAVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREAARKARDEMRSGKKRSESSNLGG 430

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL     +D  ++ELF+VEGDSAGGSAKQGR  + QAILPL+GK +N E+++   +L + 
Sbjct: 431 KLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEKSKLADILKND 490

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E   +++A+G GIG   F      Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G
Sbjct: 491 EYRAIVSAIGAGIG-TEFTAGDSNYSKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIDEG 549

Query: 533 FLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            +Y+ +PPLY I     + ++++Y   +E L +YL                G ++   L 
Sbjct: 550 RVYLAQPPLYKIASKSGKLETVRYAWTDEQLANYLKE--FKNFELQRYKGLGEMNPEQLW 607

Query: 589 N 589
            
Sbjct: 608 E 608



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 105/295 (35%), Gaps = 11/295 (3%)

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D  G+      +     +   +       + +  L    +    +     ++ ++    +
Sbjct: 362 DQLGSASARSAVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREA-ARKARDEMRSGK 420

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
             SE   L        SK+  R  +                  K      +     N E 
Sbjct: 421 KRSESSNLGGKLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEK 480

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
            +  ++    +    ++ I       +    +N   ++           +     + +F 
Sbjct: 481 SKLADILKNDEYRAIVSAIGAGIGTEFTAGDSNYSKIIIMTDADTDGAHI--QVLLLTFF 538

Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKITGPC------SLLDTIFSIGRKGISMQRYK 740
            +Y +   +                   K+           L + +     K   +QRYK
Sbjct: 539 YRYMKPLIDEGRVYLAQPPLYKIASKSGKLETVRYAWTDEQLANYLKEF--KNFELQRYK 596

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GLGEMN  QLWETT+NP+TR+LL+V+I DA++A+   S LMGD+V+PR+ +I EN
Sbjct: 597 GLGEMNPEQLWETTMNPETRTLLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVEN 651


>gi|329944735|ref|ZP_08292814.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328529871|gb|EGF56761.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 675

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 282/649 (43%), Positives = 386/649 (59%), Gaps = 35/649 (5%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MSD     N  Y A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L 
Sbjct: 1   MSDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I VT+  DG   VSDNGRGIP D H  E     EV+MT LHAGGKF    Y VSG
Sbjct: 60  GYCDHIEVTILADGGVRVSDNGRGIPVDEHPTEHRPTVEVVMTILHAGGKFGGGGYAVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLP 177
           GLHGVG+SVVNALS+ +   ++R+G ++ MSF + G     L V G A  DTGT  TF P
Sbjct: 120 GLHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITEL-VKGEATEDTGTTQTFYP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--------------------RSPE 217
              IF   DF+Y+TL+ R ++++FLN  ++I+L D+                        
Sbjct: 179 DPSIFETVDFDYETLRRRFQQMAFLNKGLRITLTDERVGVQDAGDEITGDDSAPDAPEVG 238

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQ-----GSRDNISIDLAMRWNDGYH 270
            R  +  Y+ G+  +V++L++ KK        I  +     G   +IS+++AM+W   Y 
Sbjct: 239 FRTDSYCYEHGLRDYVAFLNKSKKAELVHPEIIDFEAEQTLGETHSISLEIAMQWTSSYS 298

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  + N I   +GGTH  G R+ALT  +  Y       K+   ++ GDD REG T+V+
Sbjct: 299 ESVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDRGLLKERDDNLTGDDIREGLTAVI 358

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ +P+F  QTK KL ++E R+ V+  V   L  WL+ HP +A+ I+ K   A+  R 
Sbjct: 359 SVKLSEPQFEGQTKTKLGNTEARTFVQQTVYGQLGDWLDSHPSDARAIITKASQAAAARL 418

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+ TRRKGVL+ AS+PGKL DCS +  ++SE+F+VEGDSAGGSA  GR  E+QAI
Sbjct: 419 AARKAREATRRKGVLESASMPGKLRDCSSKIAEESEIFIVEGDSAGGSAVGGRDPEHQAI 478

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           +P+RGKILNVE+AR D+ LSS  I +LITA GTGIG+D FD+ KLRY KI+IM DADVDG
Sbjct: 479 MPIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDLTKLRYGKIVIMADADVDG 537

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            HI TLLLT  FR M  LI +G  YI  PPLY +    +       ++  D L+     +
Sbjct: 538 QHIATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAVGQDK 597

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
              L  D    I +      ++D    +  +        +  +++A  +
Sbjct: 598 GRRLPKDGG--IQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADA 644



 Score =  143 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LWETT++P TR L +V + +A+ AD+ F+ LMGD+VE RR FIQ N
Sbjct: 607 IQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADADETFAILMGDDVEQRRSFIQRN 666

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 667 ASDVRFLDI 675


>gi|260101486|ref|ZP_05751723.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus
           DSM 20075]
 gi|260084700|gb|EEW68820.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus
           DSM 20075]
          Length = 653

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 260/605 (42%), Positives = 375/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 8   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 66

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S T+ D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 67  VTIHKDNSVTIRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 125

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F   G     L   G   + TGT +TF P + IFS 
Sbjct: 126 SVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFST 185

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R PE       Y  GI++FVSYL+   K  +
Sbjct: 186 TKYKYETIQERIRESAFLLKGVKFVLTDERDPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 243

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ + +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 244 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 303

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V +
Sbjct: 304 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 363

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 364 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 423

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 424 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 483

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G + F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPL
Sbjct: 484 GAGVGAE-FNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKIYIALPPL 542

Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y + +G+     +QY   +E L +          ++ F     + ++   +  ++   ++
Sbjct: 543 YRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 602

Query: 598 DKLIK 602
              +K
Sbjct: 603 LIRVK 607



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 459 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILL 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      I   +I      +  L    G K +I        L       ++G S+Q
Sbjct: 519 LTFFYRYMRPMIEKGKIYIALPPLYRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQ 578

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 579 RFKGLGEMNAEQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 636


>gi|323466444|gb|ADX70131.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus
           H10]
          Length = 648

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 260/605 (42%), Positives = 375/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 3   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S T+ D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 62  VTIHKDNSVTIRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F   G     L   G   + TGT +TF P + IFS 
Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R PE       Y  GI++FVSYL+   K  +
Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDERDPE-HHDVFQYDNGIKSFVSYLNEG-KGTI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ + +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 239 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V +
Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G + F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPL
Sbjct: 479 GAGVGAE-FNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKIYIALPPL 537

Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y + +G+     +QY   +E L +          ++ F     + ++   +  ++   ++
Sbjct: 538 YRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      I   +I      +  L    G K +I        L       ++G S+Q
Sbjct: 514 LTFFYRYMRPMIEKGKIYIALPPLYRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 574 RFKGLGEMNAEQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631


>gi|104773993|ref|YP_618973.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514009|ref|YP_812915.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423074|emb|CAI97795.1| DNA topoisomerase IV, subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093324|gb|ABJ58477.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125698|gb|ADY85028.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 643

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 261/602 (43%), Positives = 368/602 (61%), Gaps = 9/602 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I
Sbjct: 1   MPKNTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGQEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S TV D GRG+PT +H   G    EVI+T LHAGGKF +++YK SGGLHGVG
Sbjct: 60  NVTIHEDNSVTVQDFGRGMPTGMHAS-GRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSS++K+ + R+G  YE  F N G     L   G+    TGT +TF P   IFS
Sbjct: 119 SSVVNALSSYMKVHVVRDGKAYEEEFQNGGHPIGTLRCLGATKEKTGTTITFKPDPMIFS 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +NY+T+Q R+RE +FL   V+ +L D+R+P        Y  GIE+FV+YL+   K  
Sbjct: 179 TTKYNYETIQERIRESAFLLKGVKFTLTDERTP-NHHDVFQYDDGIESFVAYLNEG-KGT 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +      +GS+D + I+ A +++D Y EN + F NN+   DGG+H  G RS  TR    Y
Sbjct: 237 IGKVFYFEGSQDGMEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSGFTRAFNDY 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
            +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V 
Sbjct: 297 AKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSIVY 356

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420
           + LS +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R
Sbjct: 357 EKLSYYLLENGEWAQDLVKKAQRARDAREAAKKARDESRNGKKRHKKEVLSGKLTPAQSR 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN +RA+   +  ++EI T+I  
Sbjct: 417 NPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNEEINTMIHT 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G   F +    Y KIIIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PP
Sbjct: 477 IGAGVG-TEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGKVYIALPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I++ ++  Y   +E  ++Y         ++ F     + +       ++   ++   
Sbjct: 536 LYRISKKQTNLYAWTDEERDEYEKKVGKGYALQRFKGLGEMNADQLWETTMNPESRMLIR 595

Query: 601 IK 602
           ++
Sbjct: 596 VR 597



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   ++ I       +    +N D ++           +    
Sbjct: 453 VLNTQRAKLADIFKNEEINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHI--QI 510

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC-SLLDTIFSIGRKGISMQRY 739
            + +F  +Y R      +           +  +  +        D       KG ++QR+
Sbjct: 511 LLLTFFYRYMRPMIEAGKVYIALPPLYRISKKQTNLYAWTDEERDEYEKKVGKGYALQRF 570

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           KGLGEMNA QLWETT+NP++R L+RV+I DA  A+   + LMGD+   RR++I+EN
Sbjct: 571 KGLGEMNADQLWETTMNPESRMLIRVRIDDAQLAERRVTTLMGDQASARRKWIEEN 626


>gi|238854274|ref|ZP_04644618.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 202-4]
 gi|282851154|ref|ZP_06260521.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 224-1]
 gi|311110716|ref|ZP_07712113.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri MV-22]
 gi|238833085|gb|EEQ25378.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 202-4]
 gi|282557686|gb|EFB63281.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 224-1]
 gi|311065870|gb|EFQ46210.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri MV-22]
          Length = 652

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 269/601 (44%), Positives = 372/601 (61%), Gaps = 14/601 (2%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+  N   SSYD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G
Sbjct: 1   MAKTNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNQLVYEIVDNSVDEAMAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y   I VT++ D S TV D GRG+PT +H   GI   EVI+T LHAGGKF +K+Y+ SGG
Sbjct: 60  YGKEINVTIHKDNSITVQDFGRGMPTGMHAS-GIPTIEVILTVLHAGGKFTEKNYQTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSS+LK+R+ R+G  YE  F N G     L   G   +  GT +TF P 
Sbjct: 119 LHGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPD 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + IFS   +NY+T+Q R+RE +FL   V+ +L D+R PE  +    Y+ GI++FVSYL+ 
Sbjct: 179 ATIFSTTTYNYETIQERIRESAFLLKGVKFTLTDEREPEHHDE-FLYEDGIKSFVSYLNE 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             K  M       G ++ I ++ A ++NDGY EN + F NN+   DGG+H +G RS  T+
Sbjct: 238 D-KDTMGDVFYFSGKQNGIEVEFAGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTK 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV
Sbjct: 297 AFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVV 356

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLA 415
           +S V + LS +L E+   A+ +V+K   A   R+AA++ARD +R  K       L GKL 
Sbjct: 357 DSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   +  ++EI 
Sbjct: 417 PAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  ++  G +Y
Sbjct: 477 TMIHTIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVY 535

Query: 536 IIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           I  PPLY + +G      ++Y   +E L +   +      ++ F     + +       +
Sbjct: 536 IALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTM 595

Query: 592 D 592
           +
Sbjct: 596 N 596



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%)

Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + +    +   KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA  A+   + L
Sbjct: 561 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 620

Query: 781 MGDEVEPRREFIQEN 795
           MGD+V PRR++I EN
Sbjct: 621 MGDKVAPRRKWIDEN 635


>gi|229916010|ref|YP_002884656.1| DNA topoisomerase IV subunit B [Exiguobacterium sp. AT1b]
 gi|229467439|gb|ACQ69211.1| DNA topoisomerase IV, B subunit [Exiguobacterium sp. AT1b]
          Length = 655

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 264/597 (44%), Positives = 378/597 (63%), Gaps = 18/597 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS ++ N  Y+ D+IQ+L+GL AV+KRP MYIG TD   GLHH++YE++DNAIDE+L G+
Sbjct: 1   MSTDLFN--YNEDAIQVLEGLTAVRKRPGMYIGSTD-HRGLHHLVYEIVDNAIDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ + + TV D+GRG+PT +H   G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 58  GGQIDVTIHKNDAITVRDHGRGMPTGMHAS-GKPTPEVIFTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSS + + I R+G ++E +F + G+    L+ TG     TGT V F P +
Sbjct: 117 HGVGASVVNALSSKVVVTIHRDGKVFEQTFADGGVPQTTLIETGKT-RQTGTSVYFKPDA 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   +N+DTL  RLRE +FL   + I+L D+R+ +  + T  Y+ GI  FV YL+  
Sbjct: 176 TIFSTTTYNHDTLAERLRESAFLLKGLTITLTDERTEK--QETFHYEEGIAEFVQYLNDD 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +  +G+ + I I+LA ++ D Y ENVL F NN+  +DGGTH  G ++A+TR 
Sbjct: 234 KATLHP-IVYFEGTENEIEIELAFQFTDAYSENVLSFVNNVRTRDGGTHEVGAKTAMTRI 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           +  Y  K+   K+  +++ G D REG T ++S+++P+   +F  QTK KL S E R+  +
Sbjct: 293 MNEYARKNGLLKEKDKNLDGGDVREGLTLIVSVRIPEEFLQFEGQTKSKLGSPEARASAD 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416
           S +   L+ +LEE+P  A +++KK + A+  R+AAR+AR+  R  K     + L GKL  
Sbjct: 353 SVMAKQLTIFLEENPQMATMLIKKAIRAAQAREAARKAREEARNGKKKKRSSILNGKLTP 412

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
            + ++  K+ELFLVEGDSAGGSAKQGR R  QAILPLRGK++N E+++   ++ ++EI T
Sbjct: 413 ATSKNAAKNELFLVEGDSAGGSAKQGRDRTFQAILPLRGKVINSEKSKLQDIMKNEEINT 472

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I A+G G+G   FD++   + KIIIMTDAD DGAHI+ LLLTFFFR M  L+  G +++
Sbjct: 473 IIHAIGAGVG-HDFDLDDCNFDKIIIMTDADTDGAHIQVLLLTFFFRYMRPLVEAGRVFV 531

Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             PPLY I+    + +   Y  DE++LE  +        I       G ++ + L  
Sbjct: 532 ALPPLYRISKGKGKSEQFDYAWDEDALEKLVKVYKKGY-ILQRYKGLGEMNADQLWE 587



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   ++ I       +     N D ++           +    
Sbjct: 453 VINSEKSKLQDIMKNEEINTIIHAIGAGVGHDFDLDDCNFDKIIIMTDADTDGAHIQVLL 512

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP---CSLLDTIFSIGRKGISMQ 737
             F F      + + R+      +  +     K +          L+ +  + +KG  +Q
Sbjct: 513 LTFFFRYMRPLVEAGRVFVALPPLYRISKGKGKSEQFDYAWDEDALEKLVKVYKKGYILQ 572

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NPDTR+L+RV + DA+ AD   S LMGD V  RRE+I+EN
Sbjct: 573 RYKGLGEMNADQLWETTMNPDTRTLIRVTVDDAAVADKRVSVLMGDNVTHRREWIEEN 630


>gi|13541372|ref|NP_111060.1| DNA gyrase subunit B [Thermoplasma volcanium GSS1]
 gi|14324756|dbj|BAB59683.1| DNA gyrase subunit b [Thermoplasma volcanium GSS1]
          Length = 641

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 262/600 (43%), Positives = 370/600 (61%), Gaps = 22/600 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D+    +YD+  IQIL+GL AV+K P MYIG TD   GLHH++YEV+DN++DES+ G+
Sbjct: 1   MTDD----NYDSSQIQILEGLKAVRKVPGMYIGSTD-TRGLHHLVYEVVDNSVDESVAGF 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V +  DGS  V D+GRGIP D+H +      E+++T LH+G KF++K YK++GGL
Sbjct: 56  CSNIYVKIGKDGSVLVEDDGRGIPVDIHPKYNRPGLEIVLTELHSGAKFDKKVYKITGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-----------NDT 169
           HGVGV VVNALSS L   +KR+G+IY   F  GI    L                     
Sbjct: 116 HGVGVHVVNALSSKLIAVVKRDGHIYYEVFEKGIPKEGLKTVEDKSVLEKFGIDIKYPGH 175

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + F P  +IF   +F+ +T+  R+ +L++LN  + I+L D+R+      T+ Y+GGI
Sbjct: 176 GTIIKFYPDPEIFETTEFSKETILARVTDLAYLNPQLTITLEDERTGSL--ETLHYEGGI 233

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
              V +L    K L+  P+  +   D+  ++ A  +     E +  + NNI   +GGTH+
Sbjct: 234 VELVKHLSEG-KNLIVDPLYWREEVDHYIVEFAFTYTTDVQEILQSYVNNISTPEGGTHV 292

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G    L+R I  Y   +   K     + GDD +EG  +VL IKM DP+F  QTK KL +
Sbjct: 293 AGFHQGLSRAIQDYARSNGKIKGVD-DITGDDVKEGVIAVLHIKMQDPQFEGQTKAKLGN 351

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           S+VR +V+S  +  +  +LE +P  A +I+ +VL A+  R+A+R+A++L RRK  L+   
Sbjct: 352 SKVRGIVQSITSKFVKTFLETNPHIADLILSRVLSAAAAREASRKAKELVRRKSALEGGG 411

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS  DP  +EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNVE+A   K++
Sbjct: 412 LPGKLADCSSNDPNNTELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKVV 471

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            ++ I  L+ A+GTG+ +D  +  KLRY KIIIMTDADVDGAHIRTLLLTFFFR   SLI
Sbjct: 472 ENEIIKDLVVAIGTGVKEDI-NPRKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSLI 530

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            NG +Y  +PPLY I +G+ ++YV  EE  +   I    +  I       G ++   L +
Sbjct: 531 ENGNVYFAEPPLYRIQKGQDVRYVYTEEEKDKLSIEFGPN-AIIQRFKGLGEMNPEQLWD 589



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 2/183 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   ++ V     + + +  I    ++  +        ++      V    +    
Sbjct: 459 ILNVEKASDMKVVENEIIKDLVVAIGTGVKEDINPRKLRYGKIIIMTDADVDGAHIRTLL 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F F      I +  +       L  I  G  ++        D +         +QR+K
Sbjct: 519 LTFFFRYARSLIENGNVY-FAEPPLYRIQKGQDVRYVYTEEEKDKLSIEFGPNAIIQRFK 577

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLW+TT+NP TR L++V I DA +A+ +FS LMG++VEPRR FI+EN++ + 
Sbjct: 578 GLGEMNPEQLWDTTMNPKTRKLVQVTIQDAEEAERIFSILMGEKVEPRRRFIEENAVYAE 637

Query: 800 ALD 802
            +D
Sbjct: 638 NID 640


>gi|239942665|ref|ZP_04694602.1| DNA gyrase subunit B [Streptomyces roseosporus NRRL 15998]
 gi|239989124|ref|ZP_04709788.1| DNA gyrase subunit B [Streptomyces roseosporus NRRL 11379]
          Length = 690

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 281/664 (42%), Positives = 387/664 (58%), Gaps = 25/664 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            +  +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD 
Sbjct: 28  EVPETSYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADT 86

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGV
Sbjct: 87  IDVTILPDGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGV 146

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS+ + + +K +G  +   +  G+   PL     A  +TGT VTF    DIF 
Sbjct: 147 GVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAK-HEATEETGTTVTFWADGDIFE 205

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREITMF 224
             +++++TL  R +E++FLN  + + L D+R                       R +T  
Sbjct: 206 TTEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSADAAEPAEAEAARSVTYH 265

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+ GI  FV Y   R    + QS I I+    +  +S+++AM+WN  Y E V  F N I 
Sbjct: 266 YENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAMQWNTQYTEGVYSFANAIH 325

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 326 THEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVREGLTAIISVKLGEPQFEG 385

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ W + +P EA  I++K + AS  R AAR+ARDLTRR
Sbjct: 386 QTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRR 445

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE
Sbjct: 446 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVE 505

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF 
Sbjct: 506 KARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFL 564

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           FR M  L+  G +Y+ +PPLY I  G+        +   D L+         +  DS   
Sbjct: 565 FRFMKPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIREDSIQR 624

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                  N  +  +    +              QA          D E   S   + A  
Sbjct: 625 FKGLGEMNAEELRVTTMDIDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKD 684

Query: 642 LNFI 645
           + F+
Sbjct: 685 VRFL 688



 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D + ++G+   K I   S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 604 DALVALGKQNGKRIREDSIQRFKGLGEMNAEELRVTTMDIDHRVLGQVTLDDAAQADDLF 663

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 664 SVLMGEDVEARRSFIQRNAKDVRFLDI 690


>gi|125569849|gb|EAZ11364.1| hypothetical protein OsJ_01229 [Oryza sativa Japonica Group]
          Length = 753

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 262/622 (42%), Positives = 369/622 (59%), Gaps = 35/622 (5%)

Query: 1   MSDNIQNSSYDADSIQ------------------------ILKGLDAVKKRPSMYIGDTD 36
           M +      Y A ++Q                        +L+ LD V+ RP MYIG T 
Sbjct: 80  MQEKRVAGEYTAANVQHILWIPYFHGHILWIPYFDGGSWSVLEALDGVRTRPGMYIGST- 138

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YE+LDNA+DE+  GYA  + V L+ D S +V+DNGRGIPTD+H +   S  
Sbjct: 139 GSRGLHHLVYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQTKKSCV 198

Query: 97  EVIMTRLHAGGKFNQKS--YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           E ++T +HAGGKF      Y VSGGLHGVG+SVVNALS  L++ + R+G  Y  ++  G 
Sbjct: 199 ETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGK 258

Query: 155 LDNPLVVT---GSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISL 210
               L        + +  GT + F P   IF+    F+++T+  R+REL+FLN  + I+L
Sbjct: 259 AITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIAL 318

Query: 211 IDKRSP-EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DG 268
             +    + +     Y GG+  +V +L+  KK L   PI  +   D I++D++++W  D 
Sbjct: 319 TKEEDDLQVQHNEYCYAGGLVEYVKWLNTDKKSLH-DPIAFRKEMDGITVDVSLQWCSDS 377

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y + VL + N+I   DGGTH+ GL+++LTR I ++ +KS   K    S+ G+  REG T 
Sbjct: 378 YSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTC 437

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++++K+P+P F  QTK +L + EVR +VE  V + L+ +LE HP     I+ K L+A   
Sbjct: 438 IIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKA 497

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
             AA+RAR+L R K VL  +SLPGKLADC+  DP++SE+F+VEGDSAGGSAKQGR R+ Q
Sbjct: 498 ALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQ 557

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKILN+ER     +  ++EI  LI ALG G+  + F+   LRYHKI+I+TDADV
Sbjct: 558 AILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADV 617

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DGAHIRTLLLTFFFR   +L   G +Y+  PPLY + RGK   Y  D+  L++ +     
Sbjct: 618 DGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPT 677

Query: 569 SEE-IELFCDSKGVISKNDLRN 589
           +           G +    L  
Sbjct: 678 NASYHIQRFKGLGEMMPAQLWE 699



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 11/191 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           + N E   E  +    ++ N +  +    K E     ++    I++      V    +  
Sbjct: 566 ILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVIL-TDADVDGAHIRT 624

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGIS 735
               F F  +        I      +  +                 L++T  +       
Sbjct: 625 LLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNA--SYH 682

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEM  +QLWETT++P+ R L ++K+ DA++A+ +FS LMG  V+ R++ IQ  
Sbjct: 683 IQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNA 742

Query: 796 SLPSA---LDI 803
           +       LDI
Sbjct: 743 ASMVNLEHLDI 753


>gi|326772839|ref|ZP_08232123.1| DNA gyrase, B subunit [Actinomyces viscosus C505]
 gi|326637471|gb|EGE38373.1| DNA gyrase, B subunit [Actinomyces viscosus C505]
          Length = 675

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 281/649 (43%), Positives = 384/649 (59%), Gaps = 35/649 (5%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MSD     N  Y A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L 
Sbjct: 1   MSDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I VT+  DG   VSDNGRGIP D H  E     EV+MT LHAGGKF    Y VSG
Sbjct: 60  GYCDHIEVTILADGGVRVSDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLP 177
           GLHGVG+SVVNALS+ +   ++R+G ++ MSF + G     L V G A + TGT  TF P
Sbjct: 120 GLHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITEL-VKGEATDSTGTTQTFYP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--------------------RSPE 217
              IF   DF+Y+ L+ R ++++FLN  ++I+L D+                        
Sbjct: 179 DPTIFETVDFDYEMLRRRFQQMAFLNKGLRITLTDERLGVQDAGDEIAGDDSAPDAPEVG 238

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQ-----GSRDNISIDLAMRWNDGYH 270
            R  +  Y+ G+  +V++L++ KK        I  +     G   +IS+++AM+W   Y 
Sbjct: 239 FRTDSYCYEHGLRDYVAFLNKSKKAELIHPEIIDFEAEQSLGENHSISLEIAMQWTSAYS 298

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  + N I   +GGTH  G R+ALT  +  Y       K+   ++ GDD REG T+V+
Sbjct: 299 ESVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVI 358

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ +P+F  QTK KL ++E R+ V+  V   L  WL+ HP +A+ I+ K   A+  R 
Sbjct: 359 SVKLSEPQFEGQTKTKLGNTEARTFVQQTVYAQLGDWLDSHPGDARAIITKASQAAAARL 418

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+ TRRKGVL+ AS+PGKL DCS ++   SE+F+VEGDSAGGSA  GR  E+QAI
Sbjct: 419 AARKAREATRRKGVLESASMPGKLRDCSSKNAADSEIFIVEGDSAGGSAVGGRDPEHQAI 478

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           +P+RGKILNVE+AR D+ LSS  I +LITA GTGIG+D FDI KLRY KI+IM DADVDG
Sbjct: 479 MPIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDIAKLRYGKIVIMADADVDG 537

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            HI TLLLT  FR M  LI +G  YI  PPLY +    +       ++  D L+     +
Sbjct: 538 QHIATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAAGQEK 597

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
              L  D    I +      ++D    +  +        +  +++A  +
Sbjct: 598 GRRLPKDGG--IQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADA 644



 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 8/88 (9%)

Query: 724 DTIFSIG-RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G  KG        +QRYKGLGEMN  +LWETT++P TR L +V + +A+ AD+ 
Sbjct: 588 DKLLAAGQEKGRRLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADADET 647

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           F+ LMGD+VE RR FIQ N+     LDI
Sbjct: 648 FAILMGDDVEQRRSFIQRNASDVRFLDI 675


>gi|148377999|ref|YP_001256875.1| DNA gyrase subunit B [Mycoplasma agalactiae PG2]
 gi|148292045|emb|CAL59437.1| DNA gyrase subunit B [Mycoplasma agalactiae PG2]
          Length = 655

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 242/597 (40%), Positives = 367/597 (61%), Gaps = 14/597 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +N+SY+A SI++L+GL+AV+ RP MYIG      GLHH+++E++DN++DE + GYA+
Sbjct: 11  NQSKNNSYNASSIRVLEGLEAVRVRPGMYIGTITD-KGLHHLVWEIVDNSVDECMAGYAN 69

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  DG   + DNGRGIP   H + G+S  E ++T LHAGGKF+  +YKVSGGLHG
Sbjct: 70  FIKITICKDGYIEIEDNGRGIPVAKHPQTGLSTVETVLTVLHAGGKFDSDAYKVSGGLHG 129

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSD 180
           VG SVVNALSS   + +KREG+ Y   F + G    PL V  +   ++TGT++ F P   
Sbjct: 130 VGASVVNALSSNFHVWVKREGHTYYAHFQHGGQTVQPLTVINNIDPSETGTKIKFHPDFT 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           I     F+ + +    + +++L    ++ ++D+ +        +Y+GG+  +V+ L+  +
Sbjct: 190 ILEKHPFSVEAITDHAKRIAYLTKGTRLVVVDEINNTS--EEFYYEGGLIDYVNELNEGQ 247

Query: 241 KPLMQSPIRIQG------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           K +  S I  +G      S   I++++A+++   +   +  +TNNI   +GGTH  G   
Sbjct: 248 KLVHDSIIYAEGLYDSDKSGSKITVEVALQYTSTFQPRITTYTNNIVTIEGGTHEQGFFD 307

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           AL+R I SY  K+   K +   +  +D  +G  +++S+K PDP F  QTK KL + + R+
Sbjct: 308 ALSRLINSYALKNGLIKNENERLNKEDTSKGLVAIVSVKHPDPIFEGQTKGKLNNKDART 367

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGK 413
            V   +   L  + +E+P++A+ I+ K L +   R AA  A +  +     + IASLPGK
Sbjct: 368 AVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAEAVQANMGNNSIASLPGK 427

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LA+C+ ++ +  EL++VEG+SAGGSAK GR R  QAILPLRGK++N E+   +++LS+ E
Sbjct: 428 LANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAEKVSPERVLSNAE 487

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +LITALGTG+ +  FDINKLRYHK+IIMTDADVDGAHIRTLLLTFF+R    LI  GF
Sbjct: 488 IISLITALGTGLNES-FDINKLRYHKVIIMTDADVDGAHIRTLLLTFFYRYFRKLIEYGF 546

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +YI +PPLY I + K + Y  ++   +  L + +   +I        G +    L  
Sbjct: 547 IYIAQPPLYKIQQNKYIAYAYNDSQKDSILQSLNQDSKITIQRYKGLGEMDPEQLWE 603



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 63/84 (75%), Gaps = 3/84 (3%)

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           S+L ++    +  I++QRYKGLGEM+  QLWETT+NP+ R + +V+I DA++AD +F+ L
Sbjct: 574 SILQSLNQDSK--ITIQRYKGLGEMDPEQLWETTMNPENRKMYQVQIDDAAKADWVFTTL 631

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+V PRREFI++N+     +DI
Sbjct: 632 MGDDVLPRREFIEKNAKFVQNIDI 655


>gi|291320739|ref|YP_003516004.1| DNA gyrase subunit B [Mycoplasma agalactiae]
 gi|290753075|emb|CBH41051.1| DNA gyrase subunit B [Mycoplasma agalactiae]
          Length = 655

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 242/597 (40%), Positives = 364/597 (60%), Gaps = 14/597 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  +N+SY+A SI++L+GL+AV+ RP MYIG      GLHH+++E++DN++DE + GYA+
Sbjct: 11  NQSKNNSYNASSIRVLEGLEAVRVRPGMYIGTITD-KGLHHLVWEIVDNSVDECMAGYAN 69

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  DG   + DNGRGIP   H + G+S  E ++T LHAGGKF+  +YKVSGGLHG
Sbjct: 70  FIKITICKDGYIEIEDNGRGIPVAKHPQTGLSTVETVLTVLHAGGKFDSDAYKVSGGLHG 129

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSD 180
           VG SVVNALSS   + +KREG+ Y   F N G    PL V      ++TGT++ F P   
Sbjct: 130 VGASVVNALSSDFHVWVKREGHTYYAHFQNGGQTVQPLTVINDIDPSETGTKIKFHPDFS 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           I     F+ + +    + +++L    ++ ++D+ +        +Y+GG+  +V+ L+  +
Sbjct: 190 ILEKHPFSVEAITDHAKRIAYLTKGTRLVVVDEINNTS--EEFYYEGGLIDYVNELNEGQ 247

Query: 241 KPLMQSPIRIQG------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           K +  S I  +G      S   I++++A+++   +   +  +TNNI   +GGTH  G   
Sbjct: 248 KLVHDSIIYAEGLYDSDKSGSKITVEVALQYTSTFQPRITTYTNNIVTIEGGTHEQGFFD 307

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           AL+R I SY  K+   K +   +  +D  +G  +++S+K PDP F  QTK KL + + R+
Sbjct: 308 ALSRLINSYALKNGLIKSENERLNKEDTSKGLVAIVSVKHPDPIFEGQTKGKLNNKDART 367

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGK 413
            V   +   L  + +E+P++A+ I+ K L +   R AA  A    +     + IASLPGK
Sbjct: 368 AVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAKAVQANMGNNSIASLPGK 427

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LA+C+ ++ +  EL++VEG+SAGGSAK GR R  QAILPLRGK++N E+   +++LS+ E
Sbjct: 428 LANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAEKVSPERVLSNTE 487

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +LITALGTG+ +  FDINKLRYHK+IIMTDADVDGAHIRTLLLTFF+R    LI  GF
Sbjct: 488 IISLITALGTGLNES-FDINKLRYHKVIIMTDADVDGAHIRTLLLTFFYRYFRKLIEYGF 546

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           +YI +PPLY I + K + Y  ++   +  L + +   +         G +    L  
Sbjct: 547 IYIAQPPLYKIQQNKYIAYAYNDSQKDSILQSLNQDSKFTIQRYKGLGEMDPEQLWE 603



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 3/84 (3%)

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           S+L ++    +   ++QRYKGLGEM+  QLWETT+NP+ R + +V+I DA++AD +F+ L
Sbjct: 574 SILQSLNQDSK--FTIQRYKGLGEMDPEQLWETTMNPENRKMYQVQIDDAAKADWVFTTL 631

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+V PRREFI++N+     +DI
Sbjct: 632 MGDDVLPRREFIEKNAKFVQNIDI 655


>gi|27530064|dbj|BAC53887.1| DNA gyrase B subunit [Tatlockia micdadei]
          Length = 466

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 295/469 (62%), Positives = 373/469 (79%), Gaps = 3/469 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  +GLHHM++EV+DN+IDE+L GY   I+V ++ D S TV D+GRGIP D+HKEEG 
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDEALAGYCHEISVIIHADESITVKDDGRGIPVDIHKEEGR 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G ++E  + NG
Sbjct: 61  SAAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTIRRNGKVHEQHYRNG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           + D PL +TG A N TGT+V F PS++ FS  +F+YD L  RLRELSFLNS V+I L D+
Sbjct: 121 VPDAPLAMTGEA-NTTGTQVWFKPSANTFSNIEFHYDILAKRLRELSFLNSGVRIHLYDE 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +  + T  Y+GGI+AFV +L+R+K P+M     + G RDNIS++L+M+WND + E +
Sbjct: 180 RTQK--QDTFCYEGGIKAFVEHLNRNKTPIMPVVFSLSGERDNISVELSMQWNDSFQETI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL+G R+ALTR + SY+E    +KK K +  GDD REG T+VLS+K
Sbjct: 238 FCFTNNIPQRDGGTHLAGFRAALTRTLNSYIENEGYAKKAKITTTGDDAREGLTAVLSVK 297

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++VVES V++ L+ +L E+P  AK IV K++DA+  R+AAR
Sbjct: 298 VPDPKFSSQTKDKLVSSEVKAVVESLVSEKLNDFLLENPTVAKSIVGKIIDAARAREAAR 357

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL
Sbjct: 358 KAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPL 417

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +GKILNVE+ARFDKMLSSQE+ TLITALG GIG D +D +K+RYH+III
Sbjct: 418 KGKILNVEKARFDKMLSSQEVATLITALGCGIGPDEYDPDKIRYHRIII 466


>gi|116629641|ref|YP_814813.1| DNA topoisomerase IV subunit B [Lactobacillus gasseri ATCC 33323]
 gi|116095223|gb|ABJ60375.1| DNA topoisomerase IV subunit B [Lactobacillus gasseri ATCC 33323]
          Length = 661

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 268/598 (44%), Positives = 369/598 (61%), Gaps = 13/598 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N   SSYD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ GY  
Sbjct: 13  TNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNQLVYEIVDNSVDEAMAGYGK 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT++ D S TV D GRG+PT +H   GI   EVI+T LHAGGKF +K+Y+ SGGLHG
Sbjct: 72  EINVTIHKDNSITVQDFGRGMPTGMHAS-GIPTIEVILTVLHAGGKFTEKNYQTSGGLHG 130

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALSS+LK+R+ R+G  YE  F N G     L   G   +  GT +TF P + I
Sbjct: 131 VGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDATI 190

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   +NY+T+Q R+RE +FL   V+ +L D+R PE       Y+ GI++FVSYL+   K
Sbjct: 191 FSTTTYNYETIQERIRESAFLLKGVKFTLTDEREPE-HHDKFLYEDGIKSFVSYLNED-K 248

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
             M       G ++ I ++ A ++NDGY EN + F NN+   DGG+H +G RS  T+   
Sbjct: 249 DTMGDVFYFSGKQNGIEVEFAGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKAFN 308

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359
            Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV+S 
Sbjct: 309 DYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDSI 368

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCS 418
           V + LS +L E+   A+ +V+K   A   R+AA++ARD +R  K       L GKL    
Sbjct: 369 VYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLTPAQ 428

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   +  ++EI T+I
Sbjct: 429 SRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMI 488

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G D F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  ++  G +YI  
Sbjct: 489 HTIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIAL 547

Query: 539 PPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PPLY + +G      ++Y   +E L +   +      ++ F     + +       ++
Sbjct: 548 PPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMN 605



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%)

Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + +    +   KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA  A+   + L
Sbjct: 570 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 629

Query: 781 MGDEVEPRREFIQEN 795
           MGD+V PRR++I EN
Sbjct: 630 MGDKVAPRRKWIDEN 644


>gi|71893463|ref|YP_278909.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae J]
 gi|71851590|gb|AAZ44198.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae J]
          Length = 639

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 247/591 (41%), Positives = 359/591 (60%), Gaps = 12/591 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A++I +L+GL+AV+KRP MYIG T G + LHH+++E++DNA+DE+L G+A  I V
Sbjct: 2   SKDYQAENIVVLEGLEAVRKRPGMYIGGT-GINELHHLVWEIVDNAVDEALAGFASKIKV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  D   ++ D+GRGIPT +H +  ISAAEV+ T LHAGGKF+ KSYKVSGGLHGVG S
Sbjct: 61  TILDDFKISIEDDGRGIPTGIHPKYEISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSV 184
           VVNALS  L++ IKR+G ++   FIN G     L V  +   + +GT++ F P  +I   
Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F   T+ +RL+  ++L    +I             T  ++GGI  +V  L ++ K L 
Sbjct: 181 NSFQLLTIFNRLKNTAYLTR--RIQFELIDKRSDFSQTFCFEGGISDYVEELSKNFKKLT 238

Query: 245 QSPIR----IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            + I      + ++D I ++ A+ +    H  +  +TNNI   +GG+H +GL   L R +
Sbjct: 239 NTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCDGLLRIL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y   +   K +    +  D ++G  +++SIK  +P F  QTK KL + EVR  V    
Sbjct: 299 NNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQFVNKAF 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++    +L E+P +AK I+ + L A     AA+ AR+  +RK   DI +LPGKLADC  +
Sbjct: 359 SEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKLADCGTK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           + + +EL++VEG+SAGGSAK GR R  QAILPLRGK++N +R + +K+L ++EI ++ITA
Sbjct: 419 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTG+G   FDI+K+RY KIIIMTDAD DG+HIR+LLLTF FR    LI  GF+YI  PP
Sbjct: 479 FGTGVG-PEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAIPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           LY I++GK + Y  +E+  E YL                  G ++   L  
Sbjct: 538 LYKISQGKKIFYAYNEKEKEKYLTEILKENSKFTIQRYKGLGEMNPEQLWE 588



 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 8/108 (7%)

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755
           +I +      +      +  +T      + +    +   ++QRYKGLGEMN  QLWETT+
Sbjct: 540 KISQGKKIFYAYNEKEKEKYLT------EILKENSK--FTIQRYKGLGEMNPEQLWETTM 591

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +P TR + +V+I D      +F  LMG +V  R+ FI+EN+  + +DI
Sbjct: 592 DPQTRRMYQVQIHDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAKVDI 639


>gi|291446126|ref|ZP_06585516.1| gyrase B [Streptomyces roseosporus NRRL 15998]
 gi|291349073|gb|EFE75977.1| gyrase B [Streptomyces roseosporus NRRL 15998]
          Length = 682

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 281/664 (42%), Positives = 387/664 (58%), Gaps = 25/664 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            +  +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD 
Sbjct: 20  EVPETSYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADT 78

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGV
Sbjct: 79  IDVTILPDGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGV 138

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS+ + + +K +G  +   +  G+   PL     A  +TGT VTF    DIF 
Sbjct: 139 GVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAK-HEATEETGTTVTFWADGDIFE 197

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREITMF 224
             +++++TL  R +E++FLN  + + L D+R                       R +T  
Sbjct: 198 TTEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSADAAEPAEAEAARSVTYH 257

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+ GI  FV Y   R    + QS I I+    +  +S+++AM+WN  Y E V  F N I 
Sbjct: 258 YENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAMQWNTQYTEGVYSFANAIH 317

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 318 THEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVREGLTAIISVKLGEPQFEG 377

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ W + +P EA  I++K + AS  R AAR+ARDLTRR
Sbjct: 378 QTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRR 437

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE
Sbjct: 438 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVE 497

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF 
Sbjct: 498 KARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFL 556

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           FR M  L+  G +Y+ +PPLY I  G+        +   D L+         +  DS   
Sbjct: 557 FRFMKPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIREDSIQR 616

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                  N  +  +    +              QA          D E   S   + A  
Sbjct: 617 FKGLGEMNAEELRVTTMDIDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKD 676

Query: 642 LNFI 645
           + F+
Sbjct: 677 VRFL 680



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D + ++G+   K I   S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 596 DALVALGKQNGKRIREDSIQRFKGLGEMNAEELRVTTMDIDHRVLGQVTLDDAAQADDLF 655

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 656 SVLMGEDVEARRSFIQRNAKDVRFLDI 682


>gi|237733416|ref|ZP_04563897.1| DNA gyrase subunit B gyrB [Mollicutes bacterium D7]
 gi|229383451|gb|EEO33542.1| DNA gyrase subunit B gyrB [Coprobacillus sp. D7]
          Length = 641

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 286/639 (44%), Positives = 407/639 (63%), Gaps = 11/639 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+     SYD   IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSEEKVEHSYDESDIQVLEGLEAVRKRPGMYIG-TTSIRGLHHLVWEIVDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L  D    V D+GRG+PT  H + GIS  E I T LHAGGKF    YKVSGGL
Sbjct: 60  ASHIRVILKDDDVVQVIDDGRGMPTGTHAKTGISTVETIFTVLHAGGKFGGGGYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ + R+G+ Y   F N G     L + G + + TGT VTF    
Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHEYYQRFENGGKPAGELKIIGDS-DITGTIVTFKADK 178

Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF     ++YDTL+ R+REL+FLN  +++SL D+R+   R+   +Y+GGI+ +V+Y+++
Sbjct: 179 IIFKEGTVYDYDTLRQRIRELAFLNKGLRLSLEDQRNGVDRKHEYYYEGGIKEYVAYINK 238

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+ +  I ++  +  I+I++ M++NDGY  N+  F NNI   +GGTH  G R ALTR
Sbjct: 239 NKTPIHEEIIYVEDMQQEITIEVGMQYNDGYQSNIYSFCNNINTHEGGTHEEGFRLALTR 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y +     KKD+ ++ GDD REG T+++S+K PDP++  QTK KL ++EVR +  +
Sbjct: 299 VINNYAKSKGLLKKDEEALSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIASN 358

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            ++  L  +L E+P  AKIIV K + A+  R AA++AR++TRRK VL++++LPGKLADCS
Sbjct: 359 IISASLDKFLLENPDTAKIIVDKAIVAARARMAAKKAREMTRRKNVLEVSNLPGKLADCS 418

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  + E+F+VEG+SAGGSAK GR R  QAILPLRGKILNVE++R +K+L + EI ++I
Sbjct: 419 SKDASECEIFIVEGNSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMI 478

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA GTGIG++ F+++KLRYHKI+IMTDADVDG HIR L+LTF +R +  L+  GF+Y  +
Sbjct: 479 TAFGTGIGEE-FNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLRPLVEGGFVYAAQ 537

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKI 597
           PPLY +  GK   Y   +E L+D         +         G ++   L         +
Sbjct: 538 PPLYLLKHGKDEYYCYSDEELDDLKTKIGEGAKYSIQRYKGLGEMNAEQLWET-----TM 592

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           D   +          +E  +I  +   E  +     +  
Sbjct: 593 DPEKRILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQE 631



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 6/128 (4%)

Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNGDKIKITGPCSL--LDTIFSIGRKGISM 736
            + +F  +Y R       +      +  L    D+        L  L T    G K  S+
Sbjct: 515 LMLTFLYRYLRPLVEGGFVYAAQPPLYLLKHGKDEYYCYSDEELDDLKTKIGEGAK-YSI 573

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P+ R L ++ + +A +AD +F  LMG++VEPRREFIQEN+
Sbjct: 574 QRYKGLGEMNAEQLWETTMDPEKRILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQENA 633

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 634 KYVTDLDI 641


>gi|328466147|gb|EGF37306.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus MTCC 5463]
          Length = 648

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 261/605 (43%), Positives = 377/605 (62%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 3   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S T+ D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 62  VTIHKDNSVTIRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F   G     L   G   + TGT +TF P + IFS+
Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFSI 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R PE       Y  GI++FVSYL+   K  +
Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDERDPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ + +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 239 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL +S+ RS V+S V +
Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTSQARSAVDSLVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G + F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPL
Sbjct: 479 GAGVGAE-FNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKIYIALPPL 537

Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y + +G+     +QY   +E L +          ++ F     + ++   +  ++   ++
Sbjct: 538 YRLQKGRGKKAQIQYAWTDEELAEDEKAIKRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      I   +I      +  L    G K +I        L       ++G S+Q
Sbjct: 514 LTFFYRYMRPMIEKGKIYIALPPLYRLQKGRGKKAQIQYAWTDEELAEDEKAIKRGYSLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 574 RFKGLGEMNAEQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631


>gi|297623604|ref|YP_003705038.1| DNA topoisomerase [Truepera radiovictrix DSM 17093]
 gi|297164784|gb|ADI14495.1| DNA topoisomerase (ATP-hydrolyzing) [Truepera radiovictrix DSM
           17093]
          Length = 642

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 277/591 (46%), Positives = 380/591 (64%), Gaps = 11/591 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYI-GDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++Y ADSI++LKGL+ V+KRP+MY+ G T G  G H ++ E++DNAIDE+L G+AD + V
Sbjct: 3   TTYTADSIKVLKGLEGVRKRPAMYVQGGT-GVDGYHQLLTEIIDNAIDEALAGHADTVEV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            LN DGS TV+DNGRGIP  + K EG  A EVI T LHAGGKF+  +YKVSGGLHGVG S
Sbjct: 62  VLNPDGSATVADNGRGIPVGMMKREGRHAIEVIFTELHAGGKFDSDAYKVSGGLHGVGSS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VVNALS +L+  +K  G ++ + F  G +  P+ V G     DTG++VTFLP  DIF   
Sbjct: 122 VVNALSVFLEAEVKSGGKLHRIRFDRGEVTEPVHVIGKVKPGDTGSKVTFLPDHDIFKEV 181

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y  ++ RLREL+FL + V+I+L D+R  EP+      KGG+ AF   L      L 
Sbjct: 182 KAFDYARIRRRLRELAFLTAGVKITLEDRRGAEPKREVFQEKGGVAAFALTLAEG-NYLY 240

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             P+ I+G  D+I +++       Y + +L + N I  +DGGTHL+G ++A TR + +Y 
Sbjct: 241 DKPVLIRGHADDIEVEVGFIHTGAYVQTILTYANMITNRDGGTHLTGFKTAYTRVLNNYA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +     KK   +  GDD  EG + V+S+K+ DP+F SQ K KL++ E +S V+S V + L
Sbjct: 301 KAKNLIKKGDPAPTGDDFLEGISCVVSVKLGDPQFESQAKVKLLNPEAQSAVQSVVYERL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +LEE+P  AK I++K + A+  R+AAR+ARDL RR   +D   LPGKLADC   DP  
Sbjct: 361 TEFLEENPKVAKAIIEKAVHAAKAREAARKARDLVRRANPIDNDELPGKLADCQSEDPSV 420

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEG+SAGGSAK GR R  QAILPLRGK+LNVE+A+  K+L + EI  +I A+G G
Sbjct: 421 SELYIVEGNSAGGSAKGGRERRFQAILPLRGKVLNVEKAQLSKVLKNAEIRAMIAAIGAG 480

Query: 485 IGQD----SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +        FD+  +RYH+IIIM DADVDG+HIRTLLLTFF+  M  LI  G+LY+ +PP
Sbjct: 481 LEGTGDDAHFDLESVRYHRIIIMADADVDGSHIRTLLLTFFYNYMRPLIDAGYLYLAQPP 540

Query: 541 LYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY +   R K + YV D+  L+  L      +         G ++  +L  
Sbjct: 541 LYAVRFGREKDVTYVYDDADLQRLLAENKGRKYELQRFKGLGEMNPEELWA 591



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL--LDTIFS 728
           V    +      F +      I +  +       L  +  G +  +T       L  + +
Sbjct: 508 VDGSHIRTLLLTFFYNYMRPLIDAGYLY-LAQPPLYAVRFGREKDVTYVYDDADLQRLLA 566

Query: 729 IGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
             + +   +QR+KGLGEMN  +LW TT+NP+TR L +V + DA  A + F  LMG EV P
Sbjct: 567 ENKGRKYELQRFKGLGEMNPEELWATTMNPETRILKKVTVEDALDAKETFEVLMGTEVPP 626

Query: 788 RREFIQENSLPSALDI 803
           RR FI+EN+  + LD+
Sbjct: 627 RRRFIEENAHLAQLDV 642


>gi|58337412|ref|YP_193997.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus NCFM]
 gi|227904045|ref|ZP_04021850.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus ATCC
           4796]
 gi|58254729|gb|AAV42966.1| DNA topoisomerase IV subunitB [Lactobacillus acidophilus NCFM]
 gi|227868064|gb|EEJ75485.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus ATCC
           4796]
          Length = 648

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 261/605 (43%), Positives = 376/605 (62%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I 
Sbjct: 3   KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S T+ D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 62  VTIHKDNSITIRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS++K+R+ R+G  YE  F N G     L   G   + TGT +TF P   +FS 
Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFQNGGHPVGTLKCLGKTSDPTGTTITFKPDDTVFST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+  L D+R+PE       Y  GI++FVSYL+   K  +
Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDERTPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +    +G +D + I+ + +++DGY EN++ F NN+   DGGTH SG RS  TR    Y 
Sbjct: 239 SNVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLSIK+P+    F  QTK KL + + RS V+S V +
Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSIKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F+++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPL
Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEQGKVYIALPPL 537

Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y + +G+     +QY   +E L +          ++ F     + ++   +  ++   ++
Sbjct: 538 YRLQKGRGKNVEIQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   +  I       ++   +N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736
             F +      I   ++      +  L    G  ++I        L +    +GR G S+
Sbjct: 514 LTFFYRYMRPMIEQGKVYIALPPLYRLQKGRGKNVEIQYAWTDEELAEDEKKMGR-GYSL 572

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QR+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+   + LMGD+V  RR++I+EN
Sbjct: 573 QRFKGLGEMNAEQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631


>gi|296137759|ref|YP_003645002.1| DNA gyrase subunit beta [Tsukamurella paurometabola DSM 20162]
 gi|296025893|gb|ADG76663.1| DNA gyrase, B subunit [Tsukamurella paurometabola DSM 20162]
          Length = 688

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 255/620 (41%), Positives = 362/620 (58%), Gaps = 42/620 (6%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              + +Y ADSI+ L+GL+AV+KRP MYIG T G  GLHHMI+EV+DN++DE++ G+A  
Sbjct: 9   KSGSGNYGADSIKQLEGLEAVRKRPGMYIG-TTGPRGLHHMIWEVVDNSVDEAMAGHATR 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + V L  DG   V D+GRGIP  +H + GI   ++++T LHAGGKF+  +Y VSGGLHGV
Sbjct: 68  VDVKLRADGGVEVIDDGRGIPVAMHAK-GIPTVQLVLTSLHAGGKFDSDAYAVSGGLHGV 126

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFI----NGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           G+SVVNALSS +++ I  +G  ++ +F             ++ G     TGT V F    
Sbjct: 127 GISVVNALSSRVEVEIDVDGFHWQQNFHWDDAKRDSVAEDLIKGEPTTRTGTTVRFWADP 186

Query: 180 DIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------------- 216
            +F     ++++T+  RL+E++FLN  + I+L D+R                        
Sbjct: 187 KVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAIEVPDEDITEEAPSAHEEDVA 246

Query: 217 --------EPREITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                   + RE    Y  G+  +V +++    K P+  S I  +G      I++AM+WN
Sbjct: 247 AALAEVAPKKRERIFHYPDGLVDYVKHINARTSKSPIHASIISFEGKEKGHEIEIAMQWN 306

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            GY E+V  F N I   +GGTH  G R+ALT  + +Y +     K+    + GDD REG 
Sbjct: 307 SGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLVKEKDGELSGDDIREGL 366

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +V+S+K+ +P+F  QTK KL ++EV+S V+    + L  W + +P +AK IV+K   ++
Sbjct: 367 AAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCREQLQFWFDSNPADAKTIVQKAAASA 426

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR   
Sbjct: 427 QARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIVEGDSAGGSAKSGRDSM 486

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILP+RGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI KLRY KI++M DA
Sbjct: 487 YQAILPIRGKIINVEKARIDKVLKNTEVQSIITAFGTGI-HDEFDIAKLRYKKIVLMADA 545

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLI 564
           DVDG HI TLLLT  FR M  L+ +G +Y+ +PPLY     +G   ++   +   +  L 
Sbjct: 546 DVDGQHISTLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQKGAEPEFAYSDAERDALLA 605

Query: 565 NQSLSEEIELFCDSKGVISK 584
               S +     D       
Sbjct: 606 EGLKSGKKINKDDGIQRYKG 625



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +LL      G+K I+    +QRYKGLGEMNA +LWETT++P  R L +V + DA+ AD+L
Sbjct: 602 ALLAEGLKSGKK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRVLKQVTLDDAAAADEL 660

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMG++V  RR FI  N+     LD+
Sbjct: 661 FSILMGEDVVARRSFIARNAKDVRFLDV 688


>gi|77414294|ref|ZP_00790453.1| DNA gyrase, B subunit [Streptococcus agalactiae 515]
 gi|77159673|gb|EAO70825.1| DNA gyrase, B subunit [Streptococcus agalactiae 515]
          Length = 577

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 257/527 (48%), Positives = 370/527 (70%), Gaps = 4/527 (0%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
            RP MYIG T  E GLHH+++E++DN+IDE+L G+A  I V +  D S TV D+GRGIP 
Sbjct: 1   MRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A E + T LHAGGKF    YKVSGGLHGVG SVVNALS+ L +++ + G I
Sbjct: 60  DIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKI 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNS 204
           +   +  G++ N L + G   + +GT V F P  +IF+    F++D L  R++EL+FLN 
Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            ++IS+ DKR  +  E    Y+GGI ++V +++ +K+ + ++PI   G  D IS+++AM+
Sbjct: 179 GLRISISDKREGQEVEKEYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGISVEVAMQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +  GY E V+ F NNI   +GGTH  G R+ALTR I  Y +K+   K+++ ++ G+D RE
Sbjct: 239 YTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+S+K P+P+F  QTK KL +SEV  +     ++  + +L E+P  AK IV+K + 
Sbjct: 299 GLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGIL 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR++TR+K  L+I++LPGKLADCS  + + +ELF+VEGDSAGGSAK GR+
Sbjct: 359 ASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAGGSAKSGRN 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG G D FD++K+RY K++IMT
Sbjct: 419 REFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGAD-FDVSKVRYQKLVIMT 477

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           DADVDGAHIRTLLLT  +R M  ++  G++YI +PP+YG+  G  ++
Sbjct: 478 DADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIK 524



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I + I  G   +       LDT +S GR   ++QRYKGLGEM+   LWET ++P+
Sbjct: 518 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHXLWETXMDPE 575

Query: 759 T 759
           T
Sbjct: 576 T 576


>gi|300361706|ref|ZP_07057883.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           gasseri JV-V03]
 gi|300354325|gb|EFJ70196.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           gasseri JV-V03]
          Length = 661

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 268/598 (44%), Positives = 369/598 (61%), Gaps = 13/598 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            N   SSYD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ GY  
Sbjct: 13  TNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNQLVYEIVDNSVDEAMAGYGK 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT++ D S TV D GRG+PT +H   GI   EVI+T LHAGGKF +K+Y+ SGGLHG
Sbjct: 72  EINVTIHKDNSVTVQDFGRGMPTGMHAS-GIPTIEVILTVLHAGGKFTEKNYQTSGGLHG 130

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALSS+LK+R+ R G  YE  F N G     L   G   +  GT +TF P + I
Sbjct: 131 VGSSVVNALSSYLKVRVVRNGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDATI 190

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   +NY+T+Q R+RE +FL   V+ +L D+R PE  +    Y+ GI++FVSYL+   K
Sbjct: 191 FSTTTYNYETIQERIRESAFLLKGVKFTLTDEREPEHHDE-FLYEDGIKSFVSYLNED-K 248

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
             M       G ++ I ++ A ++NDGY EN + F NN+   DGG+H +G RS  T+   
Sbjct: 249 DTMGDVFYFSGQQNGIEVEFAGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKAFN 308

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359
            Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL + + RSVV+S 
Sbjct: 309 DYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDSI 368

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCS 418
           V + LS +L E+   A+ +V+K   A   R+AA++ARD +R  K       L GKL    
Sbjct: 369 VYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLTPAQ 428

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   +  ++EI T+I
Sbjct: 429 SRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMI 488

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             +G G+G D F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  ++  G +YI  
Sbjct: 489 HTIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIAL 547

Query: 539 PPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PPLY + +G      ++Y   +E L +   +      ++ F     + +       ++
Sbjct: 548 PPLYKLQKGNGAKAKIKYAWTDEELNEDSKDMGKGFALQRFKGLGEMNADQLWETTMN 605



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%)

Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + +    +   KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA  A+   + L
Sbjct: 570 EELNEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 629

Query: 781 MGDEVEPRREFIQEN 795
           MGD+V PRR++I EN
Sbjct: 630 MGDKVAPRRKWIDEN 644


>gi|313678887|ref|YP_004056627.1| DNA gyrase subunit B [Mycoplasma bovis PG45]
 gi|312950233|gb|ADR24828.1| DNA gyrase, B subunit [Mycoplasma bovis PG45]
          Length = 655

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 248/597 (41%), Positives = 364/597 (60%), Gaps = 14/597 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
              +NSSY+A SI++L+GL+AV+ RP MYIG      GLHH+++E++DN++DE + GYA+
Sbjct: 11  KKTENSSYNASSIRVLEGLEAVRVRPGMYIGTITD-KGLHHLVWEIVDNSVDECMAGYAN 69

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  DG   + DNGRGIP   H + G+S  E ++T LHAGGKF+  +YKVSGGLHG
Sbjct: 70  YIKITICKDGYIEIEDNGRGIPVAKHPQTGLSTVETVLTVLHAGGKFDSDAYKVSGGLHG 129

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           VG SVVNALSS L + +KREG+ Y   F N G    PL +      N+TGT++ F P   
Sbjct: 130 VGASVVNALSSDLHVWVKREGHTYYAHFQNGGQTVQPLTIINDIEPNETGTKIKFYPDFS 189

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           I     F+ + +    + +++L    ++ ++D+ +        +Y+GG+  +V+ L+  +
Sbjct: 190 ILEKHPFSVEAITDHAKRIAYLTKGTRLVVVDEFNNTS--EEFYYEGGLIDYVNELNEGQ 247

Query: 241 KPLMQSPIRIQG------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           K +  S I  +G      S   I++++AM++   +   +  +TNNI   +GGTH  G   
Sbjct: 248 KLVHDSIIYAEGLYDSDKSGSKITVEVAMQYISTFQPRITTYTNNIVTIEGGTHEQGFFD 307

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           AL+R I SY  K+   K D   +  +D  +G  +++SIK PDP F  QTK KL + + R+
Sbjct: 308 ALSRLINSYALKNNLIKNDSERLNKEDTSKGLVAIVSIKHPDPIFEGQTKGKLNNKDART 367

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGK 413
            V   +   L  + +E+P++A+ I+ K L +   R AA  A    +     + IASLPGK
Sbjct: 368 AVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAKAVQANMGNNSIASLPGK 427

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LA+C+ ++ +  EL++VEG+SAGGSAK GR R  QAILPLRGK++N E+   +++LS+ E
Sbjct: 428 LANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAEKVSPERVLSNAE 487

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +LITALGTG+ +  FDINKLRYHK+IIMTDADVDGAHIRTLLLTFF+R    LI  GF
Sbjct: 488 IISLITALGTGLNET-FDINKLRYHKVIIMTDADVDGAHIRTLLLTFFYRYFRKLIEYGF 546

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589
           +YI +PPLY I + K + Y  ++   +  L   +   +I        G +    L  
Sbjct: 547 IYIAQPPLYKIQQNKYIAYAYNDSQKDSILQELNQDSKITIQRYKGLGEMDPEQLWE 603



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 62/84 (73%), Gaps = 3/84 (3%)

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           S+L  +    +  I++QRYKGLGEM+  QLWETT+NP+ R + +V+I DA++AD +F+ L
Sbjct: 574 SILQELNQDSK--ITIQRYKGLGEMDPEQLWETTMNPENRKMYQVQIDDAAKADWVFTTL 631

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MGD+V PRREFI++N+     +DI
Sbjct: 632 MGDDVLPRREFIEKNAKFVQNIDI 655


>gi|77406144|ref|ZP_00783217.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B]
 gi|77408497|ref|ZP_00785234.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1]
 gi|77172854|gb|EAO75986.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1]
 gi|77175267|gb|EAO78063.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B]
          Length = 620

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 261/598 (43%), Positives = 387/598 (64%), Gaps = 6/598 (1%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
            RP MYIG T  E GLHH+++E++DN+IDE+L G+A  I V +  D S TV D+GRGIP 
Sbjct: 1   MRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A E + T LHAGGKF    YKVSGGLHGVG SVVNALS+ L +++ + G +
Sbjct: 60  DIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKV 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNS 204
           +   +  G++ N L + G   + +GT V F P  +IF+    F++D L  R++EL+FLN 
Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            ++IS+ DKR  +  E    Y+GGI ++V +++ +K+ + ++PI   G  D IS+++AM+
Sbjct: 179 GLRISISDKREGQEVEKEYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGISVEVAMQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +  GY E V+ F NNI   +GGTH  G R+ALTR I  Y +K+   K+++ ++ G+D RE
Sbjct: 239 YTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+S+K P+P+F  QTK KL +SEV  +     ++  + +L E+P  AK IV+K + 
Sbjct: 299 GLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGIL 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR++TR+K  L+I++LPGKLADCS  + + +ELF+VEGDSAGGSAK GR+
Sbjct: 359 ASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAGGSAKSGRN 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG G D FD++K+RY K++IMT
Sbjct: 419 REFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGAD-FDVSKVRYQKLVIMT 477

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DADVDGAHIRTLLLT  +R M  ++  G++YI +PP+YG+ +  S      +  +     
Sbjct: 478 DADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGV-KVGSEIKAYIQPGVNQ-EE 535

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               + +      SK  + +      +DD    +  +        +  ++ A  +   
Sbjct: 536 ELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKI 593



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I + I  G   +       LDT +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 518 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHQLWETTMDPE 575

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+ N++ S LDI
Sbjct: 576 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEANAVYSNLDI 620


>gi|184199651|ref|YP_001853858.1| DNA gyrase subunit B [Kocuria rhizophila DC2201]
 gi|183579881|dbj|BAG28352.1| DNA gyrase subunit B [Kocuria rhizophila DC2201]
          Length = 686

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 272/618 (44%), Positives = 380/618 (61%), Gaps = 43/618 (6%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +++     Y A  I +L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY 
Sbjct: 3   TEDSPQHEYGASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYC 61

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VTL  DG   VSDNGRGIP D+H  EG    EV+MT LHAGGKF    Y VSGGLH
Sbjct: 62  DHIEVTLQADGGVRVSDNGRGIPVDMHPTEGKPTVEVVMTILHAGGKFGGGGYAVSGGLH 121

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           GVG+SVVNALS  +   ++R+G+++ MSF N G     L V G A  +TGT   F P ++
Sbjct: 122 GVGISVVNALSRQVDTEVRRQGHVWRMSFANGGRPQGEL-VKGEATEETGTTQVFYPDAE 180

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------------ 222
           IF   DF+++TL+ R ++++FLN  ++I+L D+R+ +                       
Sbjct: 181 IFETVDFDFETLRARFQQMAFLNKGLRITLTDERASDETGEEIAGDTPSDASGPLEGQDG 240

Query: 223 -----------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----RDNISIDL 261
                              Y+ G+  +V++L+  KK  +     I          +S++L
Sbjct: 241 GTAGGDDAAAAGARQVVYCYEDGLLDYVTFLNSSKKADLIHQDVISLEVDDPDKKMSLEL 300

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+W   ++E+V  + N I   +GGTH  G R+ALT  I  Y  ++   +    ++ G+D
Sbjct: 301 AMQWTTAFNESVHTYANTINTHEGGTHEEGFRTALTTLINRYARENKLLRDKDDNLTGED 360

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T+V+SIK+ +P+F  QTK KL +SE ++ V+  + +   AWLE +P  AK I++K
Sbjct: 361 VREGLTAVISIKLSEPQFEGQTKTKLGNSEAKTFVQREMFELFGAWLERNPNPAKDIIRK 420

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + AS  R AAR+AR+ TRRKG+L+   +PGKL DCS +DP  SE+++VEGDSAGGSA Q
Sbjct: 421 AIYASQARLAARKARETTRRKGLLESGGMPGKLKDCSSKDPTLSEIYIVEGDSAGGSAVQ 480

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR   +QAILPLRGKILNVERAR D+ LS+ E+ ++ITA G GIG D FDI+K RYHKI+
Sbjct: 481 GRDPAHQAILPLRGKILNVERARLDRALSNAEVQSMITAFGAGIG-DDFDIDKARYHKIV 539

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           +M DADVDG HI TLLLT  FR M  LI +G++Y+ +PPLY I    +       ++  D
Sbjct: 540 LMADADVDGQHITTLLLTLLFRFMRPLIEHGYVYLAQPPLYRIKWSNAPHDYVFSDAERD 599

Query: 562 YLINQSLSEEIELFCDSK 579
             + + L+E   L  D+ 
Sbjct: 600 AALAKGLAENRRLPKDNG 617



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LWETT++P+ R+LL+V + DA+ AD +FS LMG++VE RREFIQ+N
Sbjct: 618 IQRYKGLGEMDYTELWETTMDPEHRTLLQVTMDDAAAADQIFSVLMGEDVESRREFIQQN 677

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 678 AKDIRFLDI 686


>gi|300173091|ref|YP_003772257.1| DNA topoisomerase IV subunit B [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887470|emb|CBL91438.1| DNA topoisomerase IV, B subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 690

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 265/684 (38%), Positives = 383/684 (55%), Gaps = 21/684 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    + YD+DSI+IL+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAEK---NHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ + + TV D GRG+P  +H E G    EVI+T LHAGGKF Q  Y  SGGL
Sbjct: 57  GHDIRVTIHENNAITVQDFGRGMPVGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS  L++ I R+G+ ++  FI  G     L   G     +GT+VTF P +
Sbjct: 116 HGVGSSVVNALSESLQVTIVRDGHKWQEDFIKGGQPVGTLRDLGVTKEPSGTKVTFKPDA 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + YDTL  RLRE +FL S V+ SL D+R    R     Y+ G+EAFV +L+  
Sbjct: 176 TIFSATVYKYDTLSERLRESAFLMSGVKFSLTDERVKPKRVEEYHYEKGLEAFVGFLNEE 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+  + S +  +G +D I++++A ++NDGY E +L F NN+  +DGGTH  G R+A T+ 
Sbjct: 236 KET-IGSIMTFEGQQDGIAVEVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +V+S+++P+   +F  QTK KL + E R +V+
Sbjct: 295 FNEYARKVNLLKEKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKGKLGTPEARGIVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLA 415
           + VN+ L  +L E+    + +++K + A   R+AAR+A     T +        L GKLA
Sbjct: 355 AVVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKTKGQKDRLLSGKLA 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ + +ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI 
Sbjct: 415 PAQSKNAEHNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEIS 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLI A+G G+G   F +    + K+IIMTDAD DGAHI+TLLLTFF++ M  LI  G +Y
Sbjct: 475 TLIYAIGGGVG-TDFKVADTAFSKVIIMTDADDDGAHIQTLLLTFFYKYMKPLIEAGRVY 533

Query: 536 IIKPPLYGITRGKS---LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY +         ++    + LE          E+  F           +   + 
Sbjct: 534 IALPPLYRVKYASKKFEDKFAWTNDELETITNQNDARYELTRFKGLGE------MNAPLL 587

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +D   +          +           +  +     + + +   L+      +  
Sbjct: 588 WETTMDPESRTLIRVKIDDAVLAEKRVTTLMGDKVEPRREWIEANVHFTLDEAGSILDTV 647

Query: 653 WHGSINNSDILVKRIARGVQEQFV 676
                N SDI  K       +  V
Sbjct: 648 EGYDSNASDIFEKVRNHEKTDSVV 671



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 49/62 (79%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
             + R+KGLGEMNA  LWETT++P++R+L+RVKI DA  A+   + LMGD+VEPRRE+I+
Sbjct: 571 YELTRFKGLGEMNAPLLWETTMDPESRTLIRVKIDDAVLAEKRVTTLMGDKVEPRREWIE 630

Query: 794 EN 795
            N
Sbjct: 631 AN 632


>gi|330718555|ref|ZP_08313155.1| DNA topoisomerase IV subunit B [Leuconostoc fallax KCTC 3537]
          Length = 708

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 255/587 (43%), Positives = 363/587 (61%), Gaps = 12/587 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++N+ Y++DSI+IL+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+ D I
Sbjct: 2   VKNNEYNSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGFGDEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ + + TV D GRG+P  +H E G    EVI+T LHAGGKF Q  Y  SGGLHGVG
Sbjct: 61  NVTIHENNAITVQDFGRGMPVGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS  L++ I REG+ +E  F++ G     L   G     TGT +TF P ++IFS
Sbjct: 120 SSVVNALSESLQVTIVREGHKWEEDFVDGGKPVGTLRDLGKTKEHTGTILTFKPDANIFS 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              + Y+TL  RLRE +FL S V+ +L D+R    R     Y  G+EAFV +L+   K  
Sbjct: 180 TTVYKYETLAERLRESAFLMSGVKFTLTDERVDPIRHEAYHYDKGLEAFVGFLNED-KGT 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           + S +  +G ++ I +D+A ++NDGY E +L F NN+  +DGGTH +G RSA T+    Y
Sbjct: 239 IGSIMTFEGQQEGIIVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEAGFRSAWTKAFNEY 298

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             ++   K   +++ G D REG ++V+S+++P+   +F  QTK+KL + E R +V++ VN
Sbjct: 299 ARRTNLLKDKDKNLEGSDVREGLSAVISLRVPEQYLQFEGQTKDKLGTPEARGIVDAIVN 358

Query: 362 DGLSAWLEEHPLEAKIIVKK--VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + LS +L E+    + +++K      +       R    T R        L GKL+    
Sbjct: 359 ETLSRFLMENGDFGQNLIRKALRAREAREAARKARDESRTGRSKNAKERLLSGKLSPAQS 418

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++  K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI TLI 
Sbjct: 419 KNAAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEISTLIY 478

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G G+G D F +    + KIIIMTDAD DGAHI+TLLLTFF++ M  LI  G +YI  P
Sbjct: 479 AIGGGVGAD-FKVADAAFDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEEGKIYIALP 537

Query: 540 PLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           PLY +    +    Q+    + LE      +   E+  F     + +
Sbjct: 538 PLYRVKFGSKKHDDQFAWTNDELETITSQTTGRYELTRFKGLGEMNA 584



 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
             + R+KGLGEMNAS LWETT++P++R+L+RVKI D   A+   + LMGD+VEPRR +I+
Sbjct: 571 YELTRFKGLGEMNASLLWETTMDPESRTLIRVKIDDGVLAEKRVTTLMGDKVEPRRNWIE 630

Query: 794 EN 795
            N
Sbjct: 631 AN 632


>gi|72080449|ref|YP_287507.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 7448]
 gi|71913573|gb|AAZ53484.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 7448]
          Length = 639

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 251/591 (42%), Positives = 366/591 (61%), Gaps = 12/591 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A++I +L+GL+AV+KRP MYIG T G + LHH+++E++DNA+DE+L G+A  I V
Sbjct: 2   SKDYQAENIVVLEGLEAVRKRPGMYIGGT-GINELHHLVWEIVDNAVDEALAGFASKIKV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  D   ++ D+GRGIPT +H +  ISAAEV+ T LHAGGKF+ KSYKVSGGLHGVG S
Sbjct: 61  TILDDFKISIEDDGRGIPTGIHPKYEISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSV 184
           VVNALS  L++ IKR+G ++   FIN G     L V  +   + +GT++ F P  +I   
Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F   T+ +RL+  ++L   ++  LIDKRS      T  ++GGI  +V  L ++ K L 
Sbjct: 181 NSFQLLTIFNRLKNTAYLTRGIEFELIDKRSD--FSQTFCFEGGISDYVDELSKNFKKLT 238

Query: 245 QSPIR----IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            + I      + ++D I ++ A+ +    H  +  +TNNI   +GG+H +GL   L R +
Sbjct: 239 NTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCDGLLRIL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y   +   K +    +  D ++G  +++SIK  +P F  QTK KL + EVR  V    
Sbjct: 299 NNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQFVNKAF 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++    +L E+P +AK I+ + L A     AA+ AR+  +RK   DI +LPGKLADC+ +
Sbjct: 359 SEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKLADCATK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           + + +EL++VEG+SAGGSAK GR R  QAILPLRGK++N +R + +K+L ++EI ++ITA
Sbjct: 419 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTG+G   FDI+K+RY KIIIMTDAD DG+HIR+LLLTF FR    LI  GF+YI  PP
Sbjct: 479 FGTGVG-PEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAIPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           LY I++GK + Y  +E+  E +L                  G ++   L  
Sbjct: 538 LYKISQGKKIFYAYNEKEKEKFLAEILKENSKFTIQRYKGLGEMNPEQLWE 588



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 13/225 (5%)

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            + I +   ++           +    QA++       + Q   +    K    L+ I  
Sbjct: 419 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 478

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE-----NYL 702
                     + S I  ++I   +      +GS I S    +   +  ++ E       +
Sbjct: 479 -FGTGVGPEFDISKIRYQKII--IMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAI 535

Query: 703 TILSLICNGDKI----KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
             L  I  G KI            L  I     K  ++QRYKGLGEMN  QLWETT++P 
Sbjct: 536 PPLYKISQGKKIFYAYNEKEKEKFLAEILKENSK-FTIQRYKGLGEMNPEQLWETTMDPQ 594

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           TR + +V+I D      +F  LMG +V  R+ FI+EN+  + +DI
Sbjct: 595 TRRMYQVQIHDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAKVDI 639


>gi|83319442|ref|YP_424431.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|90110022|sp|P50028|GYRB_MYCCT RecName: Full=DNA gyrase subunit B
 gi|83283328|gb|ABC01260.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 643

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 255/598 (42%), Positives = 360/598 (60%), Gaps = 17/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N +   YD  +IQ+L+GL+AV+KRP MYIG TD   GLHH+++E++DNAIDE+L GY
Sbjct: 1   MAENKK---YDESAIQVLEGLEAVRKRPGMYIGSTDN-KGLHHLVWEIVDNAIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V L  D S TV DNGRGIPT +H + G    EVI + LHAGGKF+  +YK SGGL
Sbjct: 57  CTQIDVILEKDNSITVIDNGRGIPTGMH-KTGKPTPEVIFSVLHAGGKFDSTAYKSSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SV NALS   K  I R+  I+E+ F N G L+ PL    +    TGT + FLP  
Sbjct: 116 HGVGSSVTNALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFI-NTTYKTGTTINFLPDD 174

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   FN+  +  RL+E + LNS ++I+L D  S    E     + G+  FV  L   
Sbjct: 175 TIFSNAKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQF--QDGLVEFVKELVDD 232

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+    I I     NI +++A+++ +  +E +L F NN+   DGGTHL G +S L R 
Sbjct: 233 KTPVT-DIITINNESKNIIVEIALQYTEDDNEIILGFANNVKTIDGGTHLVGFKSGLIRA 291

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           I  Y +     K DK  +  +D REG  +++++K+P+    +  QTK KL +S+ ++VVE
Sbjct: 292 INDYAKDQKILK-DKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVE 350

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415
             V + +S WL E+ + A  +++  L+A   R AA++AR   +  +        + GKL 
Sbjct: 351 QIVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLT 410

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +  + +EL+LVEGDSAGGSAK GR R  QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 411 PAQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQ 470

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           ++I A+G G+G+D FDI+ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  LI +  +Y
Sbjct: 471 SIINAIGAGVGKD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVY 529

Query: 536 IIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY IT       Y+ DEE L  +    +   EI+ +     + +    +  +D
Sbjct: 530 IALPPLYKITFNDKSFIYLWDEEELNKFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 105/285 (36%), Gaps = 7/285 (2%)

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           +T++    +  M   +    + +    +      +  +    +       +    +    
Sbjct: 346 KTVVEQIVYEFMSYWLIENKV-LANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKL 404

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEI 630
           +         K      +++   ++           +    QA++     V N E  + +
Sbjct: 405 MLGKLTPAQGKK---RELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLV 461

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690
           ++    ++ + +N I     K +  S  N   ++           +      F +     
Sbjct: 462 DLLKNEEIQSIINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKD 521

Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
            I   ++      +  +  N            L+       K   +QRYKGLGEMNA QL
Sbjct: 522 LIIHKKVYIALPPLYKITFNDKSFIYLWDEEELNKFNKTNTKKYEIQRYKGLGEMNADQL 581

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           W+TT++P  R +++V I+D   A+ +F  LMGD+VE R+ +IQEN
Sbjct: 582 WQTTMDPKNRKIIQVTISDGLLAERMFKTLMGDDVEKRKLWIQEN 626


>gi|54020117|ref|YP_115783.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 232]
 gi|53987290|gb|AAV27491.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 232]
          Length = 639

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 246/591 (41%), Positives = 358/591 (60%), Gaps = 12/591 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A++I +L+GL+AV+KRP MYIG T G + LHH+++E++DNA+DE+L G+A  I V
Sbjct: 2   SKDYQAENIVVLEGLEAVRKRPGMYIGGT-GINELHHLVWEIVDNAVDEALAGFASKIKV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  D   ++ D+GRGIPT +H +  ISAAEV+ T LHAGGKF+ KSYKVSGGLHGVG S
Sbjct: 61  TILDDFKISIEDDGRGIPTGIHPKYEISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSV 184
           VVNALS  L++ IKR+G ++   FIN G     L V  +   + +GT++ F P  +I   
Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F   T+ +RL+  ++L    +I             T  ++GGI  +V  L ++ K L 
Sbjct: 181 NSFQLLTIFNRLKNTAYLTR--RIQFELIDKRSDFSQTFCFEGGISDYVEELSKNFKKLT 238

Query: 245 QSPIR----IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            + I      + ++D I ++ A+ +    H  +  +TNNI   +GG+H +GL   L R +
Sbjct: 239 NTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCDGLLRIL 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y   +   K +    +  D ++G  +++SIK  +P F  QTK KL + EVR  V    
Sbjct: 299 NNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQFVNKAF 358

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++    +L E+P +AK I+ + L A     AA+ AR+  +RK   DI +LPGKLADC  +
Sbjct: 359 SEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKLADCGTK 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           + + +EL++VEG+SAGGSAK GR R  QAILPLRGK++N +R + +K+L ++EI ++ITA
Sbjct: 419 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
            GTG+G   FDI+K+RY KIIIMTDAD DG+HIR+LLLTF FR    LI  GF+YI  PP
Sbjct: 479 FGTGVG-PEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAIPP 537

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           LY I++GK + Y  +E   E +L                  G ++   L  
Sbjct: 538 LYKISQGKKIFYAYNEREKEKFLAEILKENSKFTIQRYKGLGEMNPEQLWE 588



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 13/225 (5%)

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            + I +   ++           +    QA++       + Q   +    K    L+ I  
Sbjct: 419 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 478

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE-----NYL 702
                     + S I  ++I   +      +GS I S    +   +  ++ E       +
Sbjct: 479 -FGTGVGPEFDISKIRYQKII--IMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAI 535

Query: 703 TILSLICNGDKIK-ITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
             L  I  G KI            L  I     K  ++QRYKGLGEMN  QLWETT++P 
Sbjct: 536 PPLYKISQGKKIFYAYNEREKEKFLAEILKENSK-FTIQRYKGLGEMNPEQLWETTMDPQ 594

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           TR + +V+I D      +F  LMG +V  R+ FI+EN+  + +DI
Sbjct: 595 TRRMYQVQIHDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAKVDI 639


>gi|331703509|ref|YP_004400196.1| Topoisomerase IV subunit B [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|256384465|gb|ACU79035.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385298|gb|ACU79867.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455442|gb|ADH21677.1| DNA topoisomerase IV, B subunit [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
 gi|328802064|emb|CBW54218.1| Topoisomerase IV subunit B [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 643

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 256/598 (42%), Positives = 361/598 (60%), Gaps = 17/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N +   YD  +IQ+L+GLDAV+KRP MYIG TD   GLHH+++E++DNAIDE+L GY
Sbjct: 1   MAENKK---YDESAIQVLEGLDAVRKRPGMYIGSTDN-RGLHHLVWEIVDNAIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V L  D S TV DNGRGIPT +H + G S  EVI + LHAGGKF+  +YK SGGL
Sbjct: 57  CTQIDVILEKDNSITVIDNGRGIPTGMH-KTGKSTPEVIFSVLHAGGKFDSTAYKSSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SV NALS   K  I R+  I+E+ F N G L+ PL    +    TGT + FLP  
Sbjct: 116 HGVGSSVTNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANT-YKTGTTINFLPDD 174

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   FN+  +  RL+E + LNS ++I+L D  S    E     + G+  F+  L   
Sbjct: 175 SIFSNTKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQF--QDGLVEFIKELVDD 232

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+    I I     NI  ++A+++ +  +E +L F NN+   DGGTHL G +S L R 
Sbjct: 233 KTPVT-DIITINNESKNIIAEIALQYTEDDNEIILGFANNVKTSDGGTHLVGFKSGLIRA 291

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           I  Y +     K DK  +  +D REG  +++++K+P+    +  QTK KL +S+ ++VVE
Sbjct: 292 INDYAKDQKILK-DKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVE 350

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415
             V + +S WL E+ + A  +++  L+A   R AA++AR   +  +        + GKL 
Sbjct: 351 QIVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLT 410

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +  + +EL+LVEGDSAGGSAK GR R  QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 411 PAQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQ 470

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           ++I A+G G+G+D FDI+ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  LI +  +Y
Sbjct: 471 SIINAIGAGVGKD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLITHKKVY 529

Query: 536 IIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY IT       Y+ DEE L ++    +   EI+ +     + +    +  +D
Sbjct: 530 IALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 105/285 (36%), Gaps = 7/285 (2%)

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           +T++    +  M   +    + +    +      +  +    +       +    +    
Sbjct: 346 KTVVEQIVYEFMSYWLIENKV-LANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKL 404

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEI 630
           +         K      +++   ++           +    QA++     V N E  + +
Sbjct: 405 MLGKLTPAQGKK---RELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLV 461

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690
           ++    ++ + +N I     K +  S  N   ++           +      F +     
Sbjct: 462 DLLKNEEIQSIINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKD 521

Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
            I   ++      +  +  N            L+       K   +QRYKGLGEMNA QL
Sbjct: 522 LITHKKVYIALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYKGLGEMNADQL 581

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           W+TT++P  R +++V I+D   A+ +F  LMGD+VE R+ +IQEN
Sbjct: 582 WQTTMDPKNRKIIQVSISDGLLAERMFKTLMGDDVEKRKLWIQEN 626


>gi|326778153|ref|ZP_08237418.1| DNA gyrase, B subunit [Streptomyces cf. griseus XylebKG-1]
 gi|326658486|gb|EGE43332.1| DNA gyrase, B subunit [Streptomyces cf. griseus XylebKG-1]
          Length = 689

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 281/660 (42%), Positives = 386/660 (58%), Gaps = 25/660 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD I VT
Sbjct: 31  ASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADTIDVT 89

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGVSV
Sbjct: 90  ILADGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSV 149

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS+ + + +K +G+ +   +  G+   PL     A  +TGT VTF    DIF   ++
Sbjct: 150 VNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQ-HEATEETGTTVTFWADGDIFETTEY 208

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKR-------------------SPEPREITMFYKGG 228
           +++TL  R +E++FLN  + + L D+R                       R +T  Y+ G
Sbjct: 209 SFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSVDAAEPSEEETARSVTYHYENG 268

Query: 229 IEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           I  FV Y   R    + QS I I+    +  +S+++AM+WN  Y E V  F N I   +G
Sbjct: 269 IVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAMQWNTQYTEGVYSFANAIHTHEG 328

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y       +    ++ G+D REG T+++S+K+ +P+F  QTK 
Sbjct: 329 GTHEEGFRAALTSLVNRYARDKKLLRDKDDNLTGEDVREGLTAIISVKLGEPQFEGQTKT 388

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++E ++ V+  V++ L+ W + +P EA  I++K + AS  R AAR+ARDLTRRKG+L
Sbjct: 389 KLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRRKGLL 448

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           + ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE+AR 
Sbjct: 449 ESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARV 508

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M
Sbjct: 509 DKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFM 567

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
             L+  G +Y+ +PPLY I  G+        +   D L+         +  DS       
Sbjct: 568 RPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIKEDSIQRFKGL 627

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
              N  +  +    +              QA          D E   S   + A  + F+
Sbjct: 628 GEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 687



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D + ++G+      K  S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 603 DALVALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLF 662

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLDI 689


>gi|239637043|ref|ZP_04678037.1| DNA topoisomerase IV, B subunit [Staphylococcus warneri L37603]
 gi|239597393|gb|EEQ79896.1| DNA topoisomerase IV, B subunit [Staphylococcus warneri L37603]
          Length = 666

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 266/672 (39%), Positives = 387/672 (57%), Gaps = 18/672 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N QN  Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY
Sbjct: 1   MAMNKQNH-YSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV LN D S ++ DNGRG+PT +H   G    +VI T LHAGGKF Q  YK SGGL
Sbjct: 59  GDEITVILNQDDSISIEDNGRGMPTGIHAS-GKPTVQVIFTILHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+GNIY+ SF + G+    L+  G             P  
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYKQSFKDGGVPATELLKEGKTKKTGTKVTF-KPDP 176

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     FN+D L  RL+E +FL  +++I LID R  + RE    Y+ GI+ FVSY++ 
Sbjct: 177 EIFKATTSFNFDVLSERLQESAFLLKNLKIKLIDLRRGKEREEYYHYEEGIKEFVSYVNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G+ + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 GKEVLH-EVTTFTGTSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  +    K+  +++ G+D REG T+++S+++P+   +F  QTK KL +SE RS V
Sbjct: 296 VFNDYARRINELKEKDKNLDGNDIREGLTAIVSVRIPEELLQFEGQTKSKLGTSEARSAV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414
           +S V++ L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL
Sbjct: 356 DSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI
Sbjct: 416 TPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G + F I    Y +IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G +
Sbjct: 476 NTIIHTIGAGVGNE-FKIEDSNYSRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           +I  PPLY +     + K ++Y   ++ L+           ++ +     +  +      
Sbjct: 535 FIALPPLYKLEKGKGKSKKVEYAWTDDELDKLQKQLGKGFSLQRYKGLGEMNPEQLWETT 594

Query: 591 I--DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
           +  D    I   ++D   +  +                +  +   +   L+   N   + 
Sbjct: 595 MNPDTRTLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIENHVEFGMQEDLSILDNTEVQI 654

Query: 649 SEKSWHGSINNS 660
            E   +     +
Sbjct: 655 LENETYEEDETN 666



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       +    +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNEFKIEDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717
             ++           +      F F      + + R+      +  L        K++  
Sbjct: 498 SRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKSKKVEYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                LD +     KG S+QRYKGLGEMN  QLWETT+NPDTR+L+RV++ D  ++    
Sbjct: 558 WTDDELDKLQKQLGKGFSLQRYKGLGEMNPEQLWETTMNPDTRTLIRVQVEDEVRSSKRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+V PRRE+I+ +
Sbjct: 618 TTLMGDKVAPRREWIENH 635


>gi|170017459|ref|YP_001728378.1| DNA topoisomerase IV, B subunit [Leuconostoc citreum KM20]
 gi|169804316|gb|ACA82934.1| DNA topoisomerase IV, B subunit [Leuconostoc citreum KM20]
          Length = 687

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 260/675 (38%), Positives = 387/675 (57%), Gaps = 22/675 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    + YD+DSI+IL+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAEK---NHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT++ + + TV D GRG+P  +H E G    EVI+T LHAGGKF Q  Y  SGGL
Sbjct: 57  GNEIRVTIHDNNAITVQDFGRGMPVGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS  L++ I R+G+ ++  FI+ G     L   G+    +GT VTF P  
Sbjct: 116 HGVGSSVVNALSESLQVTIIRDGHQWQEDFIDGGQPVGTLRDLGATKAKSGTTVTFKPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + YDTL  RLRE +FL S V+  L D+R    R  T  Y+ G+E+FV++L+  
Sbjct: 176 SIFSATVYKYDTLSERLRESAFLMSGVKFILTDERVSPARVETYHYEKGLESFVNFLNED 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ +    +  +G ++ + +D+A ++NDGY E +L F NN+  +DGGTH  G R+A T+ 
Sbjct: 236 KETIGP-VMTFEGQQEGLVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG ++V+S+++P+   +F  QTK+KL + E R +V+
Sbjct: 295 FNEYARKVNLLKEKDKNLEGSDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGIVD 354

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLA 415
           + VN+ L  +L E+    + I++K + A   R+AAR+A     T +        L GKLA
Sbjct: 355 AVVNETLGRFLMENGDFGQNIIRKAIRAREAREAARKARDESRTGKTKGQKDRLLSGKLA 414

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++  ++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI 
Sbjct: 415 PAQSKNAARNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEIS 474

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLI A+G G+G   F +    ++KIIIMTDAD DGAHI+TLLLTFF++ M  LI  G +Y
Sbjct: 475 TLIYAIGGGVG-PDFKVEDTAFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVY 533

Query: 536 IIKPPLYGITRGKS---LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY +         Q+    + LE          E+  F           +   + 
Sbjct: 534 IALPPLYRVKYASKKFEDQFAWTNDELESITSQNDARYELTRFKGLGE------MNAPLL 587

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               ++   +          +           +  +     + + +   ++      + +
Sbjct: 588 WETTMNPETRTLIRVKIDDAVLAEKRVTTLMGDKVEPRRDWIEANVHFTMDEAGSILD-N 646

Query: 653 WHGSINNSDILVKRI 667
             G   +S  + ++I
Sbjct: 647 VDGDNESSTAVFEKI 661



 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 49/62 (79%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
             + R+KGLGEMNA  LWETT+NP+TR+L+RVKI DA  A+   + LMGD+VEPRR++I+
Sbjct: 571 YELTRFKGLGEMNAPLLWETTMNPETRTLIRVKIDDAVLAEKRVTTLMGDKVEPRRDWIE 630

Query: 794 EN 795
            N
Sbjct: 631 AN 632


>gi|293977916|ref|YP_003543346.1| DNA gyrase subunit B [Candidatus Sulcia muelleri DMIN]
 gi|292667847|gb|ADE35482.1| DNA gyrase subunit B [Candidatus Sulcia muelleri DMIN]
          Length = 667

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 258/658 (39%), Positives = 380/658 (57%), Gaps = 35/658 (5%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N +Y + +I+ L G++ V+ RPSMYIGD  G  GLHHM+YEV++N+IDESL G+ D 
Sbjct: 17  KKSNENYTSKNIKFLDGIEHVRLRPSMYIGDI-GIKGLHHMVYEVINNSIDESLSGFCDK 75

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV DNGRGIP +LH++EGISA E++MT++ AGGKF+  SYK SGGLHGV
Sbjct: 76  IYVTIHKDNSITVLDNGRGIPVELHEKEGISALELVMTKIGAGGKFDNNSYKFSGGLHGV 135

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+S VNALSS L  +I R G IY   +  G+  + L + G + N  GT++TF     +F 
Sbjct: 136 GISCVNALSSKLIAKIFRNGKIYVQKYSRGVPISKLEIIGDSKNQRGTQITFKADKFLFK 195

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRH 239
            + +NY  L++RLRELSFLN  + ISL+D+R    +   ++   F K GI+ F+ +++ +
Sbjct: 196 KRSYNYSILKNRLRELSFLNKGLSISLLDERKISKTGFFKKNHFFSKKGIKEFLMFIETN 255

Query: 240 KK----------PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           K+            ++    ++ ++ N++++L MR+N  Y E +  + NNI   +GGTH+
Sbjct: 256 KESIIENYKDKKSRIKDFFYLKKNKKNLNLELVMRYNSSYKEKIFSYVNNINTSEGGTHI 315

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG + ALT+    +  K+   +  K  + G    EG T++L+IK+ +P+F  QTK KLV+
Sbjct: 316 SGFKKALTKTFKKFFSKNR--RFKKLKISGGSFIEGLTAILTIKIINPKFEGQTKNKLVN 373

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            E+  +VE  V    +++LE++PL  K I+ KV  ++  R A +R R+L + K      +
Sbjct: 374 YEIIGLVEKIVKKKFNSFLEKNPLYLKKILNKVFLSAKARQAYKRVRELIKTKTS-KKNN 432

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LP KLADCS ++P   EL+LVEGDSAGG+AKQGR R+ QA+LPLRGKILNVE++  +K+ 
Sbjct: 433 LPIKLADCSSKNPNLCELYLVEGDSAGGTAKQGRERKFQAVLPLRGKILNVEKSIKNKIF 492

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKI----------IIMTDADVDGAHIRTLLLT 519
            ++EI  +  ALG       F   K    K+          IIMTDAD+DG+HI TL+LT
Sbjct: 493 ENEEIKNIFLALGV------FFFKKKNIIKLNIKKIRYKKIIIMTDADIDGSHISTLVLT 546

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FFFR M  LI  G++YI  PPL+ I   K   Y  + +  E  L    L           
Sbjct: 547 FFFRYMRILIEKGYIYIATPPLFLIKNYKKKIYAWNYKEREKILKKSLLKGISIQRYKGL 606

Query: 580 GVISKNDLRN-FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           G ++   L    ++   +  + +               +   V   +   E N   A 
Sbjct: 607 GEMNAEQLWETTMNPINRTLRKVTIHNRKIANKIFSMLMGENVLPRKQFIETNALFAK 664



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIG 730
               L  +  F    +Y RI   +      T    +    K KI           +    
Sbjct: 539 HISTLVLTFFF----RYMRILIEKGYIYIATPPLFLIKNYKKKIYAWNYKEREKILKKSL 594

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            KGIS+QRYKGLGEMNA QLWETT+NP  R+L +V I +   A+ +FS LMG+ V PR++
Sbjct: 595 LKGISIQRYKGLGEMNAEQLWETTMNPINRTLRKVTIHNRKIANKIFSMLMGENVLPRKQ 654

Query: 791 FIQENSLPSALD 802
           FI+ N+L + +D
Sbjct: 655 FIETNALFAKID 666


>gi|255326477|ref|ZP_05367559.1| DNA gyrase, B subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296517|gb|EET75852.1| DNA gyrase, B subunit [Rothia mucilaginosa ATCC 25296]
          Length = 678

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 274/667 (41%), Positives = 382/667 (57%), Gaps = 34/667 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           Q   Y A  I +L+GL+AV+KRP MYIG T  E GLHH++YEV+DN++DE+L GYA  I 
Sbjct: 10  QQHEYGASDITVLEGLEAVRKRPGMYIGST-TERGLHHLVYEVVDNSVDEALAGYASKID 68

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT+  DG+  V D+GRGIP D H  E  S  EV+MT LHAGGKF    Y VSGGLHGVG+
Sbjct: 69  VTIQADGAVRVEDDGRGIPVDEHPTEHKSTVEVVMTVLHAGGKFGGGGYSVSGGLHGVGI 128

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALS+ +   + R+G  + +SF N G+ D PL   G   + TGT  TF P  +IF  
Sbjct: 129 SVVNALSTRVITEVHRQGYAWHISFSNGGVPDGPLRK-GEPSDKTGTIQTFYPDPEIFET 187

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-------------------------PR 219
            +F+++TL+ R ++++FLN  + I+L D+R                              
Sbjct: 188 VEFDFETLRARFQQMAFLNKGLTITLTDEREKFVGDEVAEESEKKENILNRVRANADGFM 247

Query: 220 EITMFYKGGIEAFVSYLDRH-KKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCF 276
            +T  Y  G+  +V +L+   K  + +  +  +      N+S+++AM+W   Y E+V  +
Sbjct: 248 TVTYRYDNGLFDYVHFLNAGAKTIVNEEIVSFEAEDTERNMSLEVAMQWTGAYKESVYSY 307

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G R+ALT  +  Y  ++   +    ++ G+D REG T+V+SIK+ +
Sbjct: 308 ANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTAVISIKISE 367

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SE +S  +  VND L  W   +P  AK IV++ + A+  R AAR+AR
Sbjct: 368 PQFEGQTKTKLGNSEAKSFTQREVNDHLGDWFGRNPAVAKDIVRRAITAAQARIAARKAR 427

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           + TRRKG+L+ +S+PGKL DCS +DP  SE++LVEGDSAGGSA QGR+   QAILPLRGK
Sbjct: 428 ETTRRKGLLETSSMPGKLKDCSSKDPSISEIYLVEGDSAGGSAVQGRNPNTQAILPLRGK 487

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERAR D+ LS+ EI  +ITA GTGIG D FDI K RYHKI++M DADVDG HI TL
Sbjct: 488 ILNVERARLDRALSNAEIQAMITAFGTGIG-DDFDIEKARYHKIVLMADADVDGQHITTL 546

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELF 575
           LLT  FR M  LI  G++Y+ +PPLY I    +   YV  +   ++ L   +        
Sbjct: 547 LLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVYSDAERDEALARGAAKNLRLPK 606

Query: 576 CDSKGVISKNDLRNFIDDA-LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
            +           ++ +     +D   +       +       I  V   E  +     +
Sbjct: 607 DNGIQRYKGLGEMDYTELWDTTMDPARRTLLQVKMEDAAAADQIFSVLMGEDVEARREFI 666

Query: 635 ASKLANR 641
                + 
Sbjct: 667 QQNAKDI 673



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LW+TT++P  R+LL+VK+ DA+ AD +FS LMG++VE RREFIQ+N
Sbjct: 610 IQRYKGLGEMDYTELWDTTMDPARRTLLQVKMEDAAAADQIFSVLMGEDVEARREFIQQN 669

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 670 AKDIRFLDI 678


>gi|308175819|ref|YP_003915225.1| DNA gyrase subunit B [Arthrobacter arilaitensis Re117]
 gi|307743282|emb|CBT74254.1| DNA gyrase subunit B [Arthrobacter arilaitensis Re117]
          Length = 687

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 262/607 (43%), Positives = 372/607 (61%), Gaps = 26/607 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  +   +Y A  I +L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY
Sbjct: 21  MTSKV-EHTYGAQDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGY 78

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VTL  DG     DNGRGIP D+H  EG    EV+MT LHAGGKF    Y VSGGL
Sbjct: 79  CDTINVTLQADGGVRCEDNGRGIPVDVHPTEGKPTVEVVMTILHAGGKFGGGGYAVSGGL 138

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  +   ++R+G+ + + F NG      +  G   + TGT  TF P  +
Sbjct: 139 HGVGISVVNALSEKVNTIVRRQGHAWRIGFGNGGHTTQQLTKGEETDRTGTSQTFYPDPE 198

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------PEPREIT 222
           IF   +F+++TL+ R ++++FLN  ++I+L D+R                    +PR + 
Sbjct: 199 IFETVEFDFETLRARFQQMAFLNKGLRITLTDERPQDNAEPEAEVEEEIENQVVKPRTVD 258

Query: 223 MFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278
             YK G+  +V +L+  +  + +    I  +    +  IS+++AM+W + Y E+V  + N
Sbjct: 259 YLYKDGLLDYVKHLNAAKKIELVHDEVIAFESEDSKRGISLEIAMQWTNAYAESVHTYAN 318

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALT  +  Y   +   ++   ++ G+D REG T+V+S+K+ +P+
Sbjct: 319 TINTHEGGTHEEGFRAALTGLLNRYARDNKILREKDDNLTGEDAREGLTAVISVKLSEPQ 378

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +S  R  V+  VN+ L  W E +P  A+ I++K   AS  R AAR+ARD 
Sbjct: 379 FEGQTKTKLGNSMARGFVQGVVNEELGDWFERNPNVARDIIRKAQLASQARMAARKARDN 438

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            RRK  ++   +PGKL+DCS ++P + E+F+VEGDSAGGSAK+GR    QAILPLRGKIL
Sbjct: 439 ARRKSPMESFGMPGKLSDCSSKNPAECEVFIVEGDSAGGSAKRGRDPHTQAILPLRGKIL 498

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NVERAR D+ L + E+  +ITA GTGIG++ FD+ KLRYHKI++M DADVDG HI TLLL
Sbjct: 499 NVERARLDRALGNAEVQAMITAFGTGIGEE-FDMAKLRYHKIVLMADADVDGQHITTLLL 557

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCD 577
           T  FR M  LI +G++Y+  PPLY I    +   YV  ++  +D L+    S +     +
Sbjct: 558 TLIFRFMRPLIEHGYVYLAAPPLYRIKWSNAAHDYVFSDKERDDALLAGQASNKRLPKDN 617

Query: 578 SKGVISK 584
                  
Sbjct: 618 GIQRYKG 624



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ S+LW+TT++P+ R+L +V + DA+ AD++FS LMG++VE RR FIQ+N
Sbjct: 619 IQRYKGLGEMDYSELWDTTMDPERRTLRQVTMDDAAAADEVFSVLMGEDVESRRNFIQQN 678

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 679 AKDVRFLDI 687


>gi|182437498|ref|YP_001825217.1| DNA gyrase subunit B [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466014|dbj|BAG20534.1| putative DNA gyrase subunit B [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 681

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 281/660 (42%), Positives = 386/660 (58%), Gaps = 25/660 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD I VT
Sbjct: 23  ASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADTIDVT 81

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGVSV
Sbjct: 82  ILADGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSV 141

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS+ + + +K +G+ +   +  G+   PL     A  +TGT VTF    DIF   ++
Sbjct: 142 VNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQ-HEATEETGTTVTFWADGDIFETTEY 200

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKR-------------------SPEPREITMFYKGG 228
           +++TL  R +E++FLN  + + L D+R                       R +T  Y+ G
Sbjct: 201 SFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSVDAAEPSEEETARSVTYHYENG 260

Query: 229 IEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           I  FV Y   R    + QS I I+    +  +S+++AM+WN  Y E V  F N I   +G
Sbjct: 261 IVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAMQWNTQYTEGVYSFANAIHTHEG 320

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y       +    ++ G+D REG T+++S+K+ +P+F  QTK 
Sbjct: 321 GTHEEGFRAALTSLVNRYARDKKLLRDKDDNLTGEDVREGLTAIISVKLGEPQFEGQTKT 380

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++E ++ V+  V++ L+ W + +P EA  I++K + AS  R AAR+ARDLTRRKG+L
Sbjct: 381 KLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRRKGLL 440

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           + ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE+AR 
Sbjct: 441 ESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARV 500

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M
Sbjct: 501 DKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFM 559

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
             L+  G +Y+ +PPLY I  G+        +   D L+         +  DS       
Sbjct: 560 RPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIKEDSIQRFKGL 619

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
              N  +  +    +              QA          D E   S   + A  + F+
Sbjct: 620 GEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 679



 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D + ++G+      K  S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 595 DALVALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLF 654

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 655 SVLMGEDVEARRSFIQRNAKDVRFLDI 681


>gi|313238122|emb|CBY13220.1| unnamed protein product [Oikopleura dioica]
          Length = 613

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 271/540 (50%), Positives = 357/540 (66%), Gaps = 20/540 (3%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGD D E GLHH ++EVLDN+IDE L GY   I V +++DGS ++SDNGRGIP D+H 
Sbjct: 1   MYIGDPD-ERGLHHCVFEVLDNSIDEHLAGYCSRIKVAIHVDGSVSISDNGRGIPVDMHP 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + GI A E+++T LHAGGKF Q +YK SGGLHGVG   VNAL+ W +  I R G ++ ++
Sbjct: 60  KFGIPAVELVLTNLHAGGKFGQGAYKYSGGLHGVGAKCVNALADWFRADIMRNGKVHRIA 119

Query: 150 FINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQ 207
           F  G     L V G    N TGT +TF P + IF     F +D L  RLREL+FLN  + 
Sbjct: 120 FERGKTTEQLHVVGEVDPNKTGTTITFFPDATIFVDTIEFKFDRLATRLRELAFLNPGLI 179

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD------------ 255
           I L D+R    ++ + +Y  GIE FV  L  +K  +   P+ + G R             
Sbjct: 180 IDLEDERPESAKKASFYYAKGIEEFVVQLGENKTVIHDDPVVLNGKRQIELDYDGKQTTD 239

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           ++  D+  ++ND Y++ +LCF N+IP  DGGTHL+G R+ALTR I  Y + +   K    
Sbjct: 240 DVFADVVFQYNDSYNDQILCFANSIPNGDGGTHLTGFRTALTRGINQYAKVNKILKDKDP 299

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ GDD REG   V+S+KMP+PRFSSQTK+KLV++E+  VV S V +G+  + +E+P  A
Sbjct: 300 ALSGDDVREGLVCVISVKMPNPRFSSQTKDKLVNTEIEGVVSSIVYEGIMQYFDENPALA 359

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           + +++K +  +     A R    T RK  L    LPGKLADCSERDP KSEL++VEGDSA
Sbjct: 360 RKVIEKSV-NAARAREAARKARETVRKSALSGGGLPGKLADCSERDPAKSELYIVEGDSA 418

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG----QDSFD 491
           GGSAKQGR R  QAILPLRGK++NVE+AR  + L ++EI  LITA+G GIG    + SF+
Sbjct: 419 GGSAKQGRDRRTQAILPLRGKLINVEKARLHRALQNKEIQNLITAIGAGIGDGEQEGSFN 478

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           I+K+RYHK++IMTDADVDG+HIRTLLLTFF R MP L+  GFLYI +PPLY +TR    Q
Sbjct: 479 IDKVRYHKVVIMTDADVDGSHIRTLLLTFFCRHMPELVKRGFLYIAQPPLYLVTREGEKQ 538



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 60/83 (72%), Gaps = 5/83 (6%)

Query: 726 IFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLM 781
           +   G K  G+ ++R+KGLGEMNA QL+ETT++P+TR  LRV++ +  A +AD +F  LM
Sbjct: 531 VTREGEKQHGVQIKRFKGLGEMNAKQLFETTMDPETRQFLRVRLDEDNAVEADKMFDVLM 590

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           GD VEPR+ FI++N+L    LD+
Sbjct: 591 GDIVEPRKRFIEDNALNVRNLDV 613


>gi|28627816|gb|AAN75468.1| DNA gyrase subunit B [Streptomyces roseochromogenes subsp.
           oscitans]
          Length = 677

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 278/642 (43%), Positives = 391/642 (60%), Gaps = 22/642 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SYDA++I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD I VT
Sbjct: 24  ASYDANAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADRIDVT 82

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DG   V DNGRGIP   H  E   A EV++T LHAGGKF    Y VSGGLHGVG+SV
Sbjct: 83  ILADGGVRVVDNGRGIPVGTHPVEKRPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGLSV 142

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS+ L   I  +G  +   + +G    PL     A + TGT +TF    DIF   ++
Sbjct: 143 VNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLAR-HEATSRTGTSLTFWADGDIFETTEY 201

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRS--------------PEPREITMFYKGGIEAFV 233
           +++TL  R +E++FLN  + ++L D+R               P  + ++  Y GGI  FV
Sbjct: 202 SFETLARRFQEMAFLNRGLTLTLTDERPSARATAAADEADSDPAAKTVSYRYDGGITDFV 261

Query: 234 SY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +Y   R  +P   S I I        +S ++A++WN  Y ++V  + N I   +GGTH  
Sbjct: 262 AYLNSRKGEPAHPSVITIAAEDTERLLSAEVALQWNGQYTDSVYSYANGIHTHEGGTHEE 321

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +  Y  +    ++   ++ G+D REG T+++S+K+ +P+F  QTK KL ++
Sbjct: 322 GFRTALTTVVNRYAREKKLLREKDANLSGEDVREGLTAIISVKLGEPQFEGQTKTKLGNT 381

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E R+ V+  V++ L+ W + +P EA  IV+K + A+  R AAR+ARDLTRRKG+L+ A+L
Sbjct: 382 EARTFVQKIVHEHLTDWFDRNPNEAADIVRKAIQAATARVAARKARDLTRRKGLLETAAL 441

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DC   DP  SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L 
Sbjct: 442 PGKLSDCQSNDPAMSEIFVVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDKILH 501

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           +QEI  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  L+ 
Sbjct: 502 NQEIQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVE 560

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G +Y+ +PPLY I  G+        +   D L+ +   +   +  DS        L   
Sbjct: 561 EGHVYLSRPPLYKIKWGRDHVEYAYSDRERDVLLERGRQDGRRIKDDSIQRFKG--LGEM 618

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
             + L++  +  D       T  + AV   +F+    +++  
Sbjct: 619 NAEELRVTTMDPDHRVLGQVTLDDAAVADDLFSVLMGEDVEA 660



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 3/85 (3%)

Query: 722 LLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           LL+     GR  K  S+QR+KGLGEMNA +L  TT++PD R L +V + DA+ ADDLFS 
Sbjct: 593 LLERGRQDGRRIKDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAVADDLFSV 652

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
           LMG++VE RR FIQ N+     LDI
Sbjct: 653 LMGEDVEARRHFIQRNAKDVRFLDI 677


>gi|282863315|ref|ZP_06272374.1| DNA gyrase, B subunit [Streptomyces sp. ACTE]
 gi|282561650|gb|EFB67193.1| DNA gyrase, B subunit [Streptomyces sp. ACTE]
          Length = 689

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 282/661 (42%), Positives = 385/661 (58%), Gaps = 25/661 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD I V
Sbjct: 30  SPSYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADTIDV 88

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 89  TILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 148

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + +K +G  +   +  G+   PL     A  +TGT VTF    DIF   D
Sbjct: 149 VVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAR-HEATEETGTTVTFWADGDIFETTD 207

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREITMFYKG 227
           ++++TL  R +E++FLN  + + L D+R                       R +T  Y+ 
Sbjct: 208 YSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSAEAVEVPEEESTRTVTYHYED 267

Query: 228 GIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           GI  FV Y   R    + QS I I+       +S+++AM+WN  Y E V  F N I   +
Sbjct: 268 GIVDFVKYLNSRKGDVIHQSVIDIESEDKERLLSVEIAMQWNTQYSEGVYSFANAIHTHE 327

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK
Sbjct: 328 GGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVREGLTAIISVKLGEPQFEGQTK 387

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E ++ V+  V++ L+ W + +P EA  I++K + AS  R AAR+ARDLTRRKG+
Sbjct: 388 TKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRRKGL 447

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE+AR
Sbjct: 448 LESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKAR 507

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR 
Sbjct: 508 VDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRF 566

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           M  L+  G +Y+ +PPLY I  G+        +   D L+         +  DS      
Sbjct: 567 MRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIKEDSIQRFKG 626

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
               N  +  +    +              QA          D E   S   + A  + F
Sbjct: 627 LGEMNAEELRITTMDIDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRF 686

Query: 645 I 645
           +
Sbjct: 687 L 687



 Score =  138 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D + ++G+      K  S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 603 DALVALGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDIDHRVLGQVTLDDAAQADDLF 662

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLDI 689


>gi|313665344|ref|YP_004047215.1| DNA topoisomerase IV, B subunit [Mycoplasma leachii PG50]
 gi|312949281|gb|ADR23877.1| DNA topoisomerase IV, B subunit [Mycoplasma leachii PG50]
          Length = 643

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 258/598 (43%), Positives = 365/598 (61%), Gaps = 17/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N +   YD  +IQ+L+GL+AV+KRP MYIG TD   GLHH+++E++DNAIDE+L GY
Sbjct: 1   MAENKK---YDESAIQVLEGLEAVRKRPGMYIGSTDN-KGLHHLVWEIVDNAIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VTL  D S T+SDNGRGIPT +H + G S  EVI + LHAGGKF+  +YK SGGL
Sbjct: 57  CTQIDVTLEKDNSITISDNGRGIPTGMH-KTGKSTPEVIFSILHAGGKFDSTAYKSSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SV NALS   K  I R+  I+E+ F N G L+ PL    +    TGT + FLP  
Sbjct: 116 HGVGSSVTNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANT-YKTGTTINFLPDD 174

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   FN+  +  RL+E + LNS ++I+L D  S    E     + G+  F+  L   
Sbjct: 175 SIFSNTKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQF--EDGLVEFIKELVDD 232

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KK  +   I I     NI  ++A+++ +  +E +L F NN+   DGGTHL G +S L R 
Sbjct: 233 KKV-ITDIITINNESKNIIAEIALQYTEDDNEIILGFANNVKTSDGGTHLVGFKSGLIRA 291

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           I  Y ++    K DK  +  +D REG  +++++K+P+    +  QTK KL +S+ ++VVE
Sbjct: 292 INDYAKEQKILK-DKAKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVE 350

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415
             V + +S WL E+ + A  I++  L+A   R AA++AR   +  +        + GKL 
Sbjct: 351 QIVYEFMSYWLIENKVLANKIIENALNAQKARIAAKQARQAIKSVKGKKNINKLMLGKLT 410

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +  + +EL+LVEGDSAGGSAK GR R  QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 411 PAQGKKREINELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQ 470

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           ++I A+GTG+G+D FDI+ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  LI +  +Y
Sbjct: 471 SIINAIGTGVGKD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIVHKKVY 529

Query: 536 IIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY IT       Y+ DEE L ++    +   EI+ +     + +    +  +D
Sbjct: 530 IALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 78/175 (44%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  + +++    ++ + +N I     K +  S  N   ++           +    
Sbjct: 452 VINSEKAKLVDLLKNEEIQSIINAIGTGVGKDFDISDINYGKIIIMTDADTDGAHIQTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I   ++      +  +  N            L+       K   +QRYK
Sbjct: 512 LTFFYRHMKDLIVHKKVYIALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYK 571

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GLGEMNA QLW+TT++P  R +++V ITD   A+ +F  LMGD+VE R+ +IQEN
Sbjct: 572 GLGEMNADQLWQTTMDPKNRKIIQVTITDGLLAERMFKTLMGDDVEKRKLWIQEN 626


>gi|152963978|ref|YP_001359762.1| DNA gyrase, B subunit [Kineococcus radiotolerans SRS30216]
 gi|151358495|gb|ABS01498.1| DNA gyrase, B subunit [Kineococcus radiotolerans SRS30216]
          Length = 686

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 265/638 (41%), Positives = 374/638 (58%), Gaps = 26/638 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D      Y AD+I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GY D
Sbjct: 27  DGTPRPEYGADAITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYCD 85

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG     DNGRGIP D+   EG SA EV++T LHAGGKF    Y VSGGLHG
Sbjct: 86  TIAVTMLADGGLRCVDNGRGIPVDIMPGEGRSALEVVLTVLHAGGKFGGGGYSVSGGLHG 145

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS  + + ++R+G+++  SF  G+   PL   G    +TGT +TF PS + F
Sbjct: 146 VGISVVNALSRRVDVEVRRQGHVWRQSFEGGVPVAPLEK-GEETGETGTSITFWPSPETF 204

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------MFYKGGIE 230
               F+++TL+ R ++  FLN  + ISL D+R  E                   Y GG+ 
Sbjct: 205 ETTVFDFETLRTRFQQTCFLNKGLTISLSDERVVEDEVEDESTDAKPLRDVTYRYDGGLV 264

Query: 231 AFVSYLD--RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            +V +++  +  +PL  S I ++       IS+++AM+W   Y E V  F N I   +GG
Sbjct: 265 DYVKHVNSLKKNEPLHDSIISLEAEDTEQGISLEVAMQWTTAYSETVFTFANAINTTEGG 324

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           TH +G R+ALT  +  Y   +  +   +     G D REG T+++S+K+ +P+F  QTK 
Sbjct: 325 THETGFRTALTSLVQEYARAAKPALLKENDTLEGSDIREGLTAIISVKLSEPQFEGQTKT 384

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++  R+ V + V + L  W   +P EA  I KK   AS+ R AAR+AR+   RK +L
Sbjct: 385 KLGNTSARTYVNAQVREHLGHWFASNPKEAYQIAKKAHSASVARQAARKAREA-SRKSLL 443

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  SLPGKL DC   +P + E+F+VEGDSAGGSA +GR    QAILP+RGKILNVE+AR 
Sbjct: 444 ERNSLPGKLKDCQSNNPAECEVFIVEGDSAGGSATRGRDPRTQAILPIRGKILNVEKARL 503

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           D+ L +QE+  LITA GTGIG++ F++ KLRYHKIIIM DADVDG HIRTLLLT  FR M
Sbjct: 504 DRALGNQEVQALITAFGTGIGEE-FNLEKLRYHKIIIMADADVDGQHIRTLLLTLLFRYM 562

Query: 526 PSLIHNGFLYIIKPPLYGITRGK--SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             L+ NG +Y+ +PPLY I      + ++   +   +  +     + +            
Sbjct: 563 SPLVENGHVYLAQPPLYRIKWMGGAAHEFAYSDRERDALMEAGLAAGKKLPKEGKTQRYK 622

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                N+ + +   +  +   +    +  +E A  +  
Sbjct: 623 GLGEMNWDELS---ETTMDRAHRTLLQVTLEDAAAADA 657



 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 59/88 (67%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +L++   + G+K    G + QRYKGLGEMN  +L ETT++   R+LL+V + DA+ AD +
Sbjct: 600 ALMEAGLAAGKKLPKEGKT-QRYKGLGEMNWDELSETTMDRAHRTLLQVTLEDAAAADAV 658

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMG++VE RR FIQ N+     LD+
Sbjct: 659 FSVLMGEDVESRRSFIQRNARDVRFLDV 686


>gi|255972743|ref|ZP_05423329.1| gram positive topoisomerase IV [Enterococcus faecalis T1]
 gi|256762550|ref|ZP_05503130.1| gram positive topoisomerase IV [Enterococcus faecalis T3]
 gi|255963761|gb|EET96237.1| gram positive topoisomerase IV [Enterococcus faecalis T1]
 gi|256683801|gb|EEU23496.1| gram positive topoisomerase IV [Enterococcus faecalis T3]
          Length = 666

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 261/644 (40%), Positives = 374/644 (58%), Gaps = 15/644 (2%)

Query: 21  LDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNG 80
           ++AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY + I VT+  D S  V+D+G
Sbjct: 1   MEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSG 59

Query: 81  RGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK 140
           RG+PT +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SVVNALS WL++ I 
Sbjct: 60  RGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIV 118

Query: 141 REGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           R+G  Y   F + G     L   G      GT VTFLP   IFS  +F+Y+ L  RLRE 
Sbjct: 119 RDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTNFSYEILAERLRES 178

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           +FL   V+I+L D+R  EP+E    Y+ GI+ FV+YL+  K  L    +   G+++ I +
Sbjct: 179 AFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDTLTP-VVYFSGAKEGIEV 237

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           +LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+    Y  K    K+  +++ G
Sbjct: 238 ELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKDKNLEG 297

Query: 320 DDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            D REG  +VLSI++P+   +F  QTK KL +   R+VV++ V + +  +L+E+   ++ 
Sbjct: 298 SDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENSEMSQS 357

Query: 378 IVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           +++K + A   R+AAR+AR+     +K     + L GKL     R+PKK+EL+LVEGDSA
Sbjct: 358 LIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSA 417

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +G G+G   F I   
Sbjct: 418 GGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSIEDC 476

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
            Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY +++G   + V  
Sbjct: 477 NYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVI- 535

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
                +Y        E+        ++ +      ++     +  +        +  I+ 
Sbjct: 536 -----EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDD 590

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
           A  +         +        +   + F  E+       S  +
Sbjct: 591 AAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 634



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 359 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 418

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 419 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 478

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 479 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 538

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 539 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 598

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 599 TTLMGDKVEPRRKWIEQH 616


>gi|117575063|emb|CAJ43811.1| gyrase subunit beta [Candidatus Midichloria mitochondrii]
          Length = 477

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 306/478 (64%), Positives = 375/478 (78%), Gaps = 1/478 (0%)

Query: 25  KKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP 84
           +KRP MYIGDTD  SGLHHM+ EV+DNAIDE+L+G+   I V +N DGS TV D+GRGIP
Sbjct: 1   RKRPGMYIGDTDDGSGLHHMVKEVVDNAIDEALQGFCRFIYVAINPDGSVTVVDDGRGIP 60

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
           TD+H EEG+SAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVVNALS WLKLRI R+G 
Sbjct: 61  TDIHPEEGVSAAEVIMTQLHAGGKFDTNSYKVSGGLHGVGVSVVNALSKWLKLRIWRDGK 120

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
            + + F++G+    L V G AG   GTEVTFLPSS+IF+  +F++  L+HRL+ELSFLNS
Sbjct: 121 EHFVKFVDGVAVKSLEVVGDAGGKRGTEVTFLPSSEIFTTTEFSFSALEHRLKELSFLNS 180

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            V+I + D R+  P+    +++GG++ FV  LD+ KK +    I + GS  +IS +LA++
Sbjct: 181 GVRIKIEDLRAEPPKSSEFYFEGGVKEFVHDLDKSKKAV-SKIIYMSGSDKDISAELALQ 239

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WND YHEN+LCFTNNI Q DGGTHL+G R+A+TR   SYVE+    KK K S+  +D RE
Sbjct: 240 WNDSYHENMLCFTNNIRQSDGGTHLAGFRAAITRSFNSYVERMPSFKKQKLSIAPEDIRE 299

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T VLS K+PDP+FSSQTK+KLVSSEVR VVES V D LS WLEE+P EAK IV K+++
Sbjct: 300 GLTCVLSAKVPDPKFSSQTKDKLVSSEVRPVVESIVFDNLSKWLEENPNEAKTIVAKIIE 359

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R+AAR+AR+L R+K  LD+A+LPGKLA+C E+ P+  ELFLVEGDSAGGSAKQ R 
Sbjct: 360 ASAAREAARKARELKRQKSDLDMANLPGKLANCQEKIPEICELFLVEGDSAGGSAKQARD 419

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R  QAILPL+GKILNVERARF+KMLSS EIGTLITA+GT IG + FDI+KLRYHKIII
Sbjct: 420 RRIQAILPLKGKILNVERARFNKMLSSAEIGTLITAIGTSIGDNKFDIDKLRYHKIII 477


>gi|325686241|gb|EGD28284.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 643

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 262/602 (43%), Positives = 368/602 (61%), Gaps = 9/602 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I
Sbjct: 1   MPKNTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGQEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S TV D GRG+PT +H   G    EVI+T LHAGGKF +++YK SGGLHGVG
Sbjct: 60  NVTIHEDNSVTVQDFGRGMPTGMHAS-GRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSS++K+ + R+G  YE  F N G     L   G+    TGT +TF P   IFS
Sbjct: 119 SSVVNALSSYMKVHVVRDGKAYEEEFKNGGHPIGTLRCLGATKEKTGTTITFKPDPMIFS 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +NY+T+Q R+RE +FL   V+ +L D+R+P        Y  GIE+FVSYL+   K  
Sbjct: 179 TTKYNYETIQERIRESAFLLKGVKFTLTDERTP-NHHDVFQYDDGIESFVSYLNEG-KGT 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +      +GS+D + I+ A +++D Y EN + F NN+   DGG+H  G RS  TR    Y
Sbjct: 237 IGKVFCFEGSQDGMEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSGFTRAFNDY 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
            +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V 
Sbjct: 297 AKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSIVY 356

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420
           + LS +L E+   A+ +VKK L A   R+AA++ARD +R  K       L GKL     R
Sbjct: 357 EKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSGKLTPAQSR 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN +RA+   +  ++EI T+I  
Sbjct: 417 NPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNEEINTMIHT 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G   F +    Y KIIIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PP
Sbjct: 477 IGAGVG-TEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGKVYIALPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I++ ++  Y   +E  ++          ++ F     + +       ++   ++   
Sbjct: 536 LYRISKKQTNLYAWTDEERDEDEKKVGKGYALQRFKGLGEMNADQLWETTMNPESRMLIR 595

Query: 601 IK 602
           ++
Sbjct: 596 VR 597



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   ++ I       +    +N D ++           +    
Sbjct: 453 VLNTQRAKLADIFKNEEINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHI--QI 510

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC-SLLDTIFSIGRKGISMQRY 739
            + +F  +Y R      +           +  +  +        D       KG ++QR+
Sbjct: 511 LLLTFFYRYMRPMIEAGKVYIALPPLYRISKKQTNLYAWTDEERDEDEKKVGKGYALQRF 570

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           KGLGEMNA QLWETT+NP++R L+RV+I DA  A+   + LMGD+   RR++I+EN
Sbjct: 571 KGLGEMNADQLWETTMNPESRMLIRVRIDDAQLAERRVTTLMGDQASARRKWIEEN 626


>gi|299133795|ref|ZP_07026989.1| DNA topoisomerase IV, B subunit [Afipia sp. 1NLS2]
 gi|298591631|gb|EFI51832.1| DNA topoisomerase IV, B subunit [Afipia sp. 1NLS2]
          Length = 689

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 359/657 (54%), Gaps = 26/657 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +   + Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A  
Sbjct: 40  SSAEAGYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHASF 98

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I V L  DG  TV DNGRGIP D H + +  SA E+IM  LHAGGKF+ K Y+ SGGLHG
Sbjct: 99  IEVELGADGYLTVIDNGRGIPVDPHPKFKNKSALEIIMCTLHAGGKFDSKVYETSGGLHG 158

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALSS L + + R   +Y M+F  G     L   G   N  GT + F P ++IF
Sbjct: 159 VGVSVVNALSSQLVVEVARNQKLYRMTFERGKPKGKLEELGKVHNRRGTSIRFKPDTEIF 218

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY 235
                F    L    R  ++L   V+I               P E T  + GG++ +++ 
Sbjct: 219 GGKAVFKPQRLFKMARSKAYLFGGVEIRWKCAPELLKGIEDVPAEDTFHFPGGLKDYLAA 278

Query: 236 LDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                  +       +  R+  + + + A+ W       +  +TN +P  DGGTH +G+R
Sbjct: 279 AIHSDTLVHPDIFSGKSGRNGAHGACEWAVAWTADADGFMSSYTNTVPTPDGGTHETGMR 338

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SAL R I  + E++    K   S+  +D   G   +LS+ + +P F  QTK++L ++E +
Sbjct: 339 SALLRGIRDHAERTGQ-GKKASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQ 397

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VE  V D    WL  +P +A  ++  +++ +  R   R  ++   RK  +    LPGK
Sbjct: 398 RIVEQAVKDPFDHWLSGNPTQANKLLDFIIERADERLRRRAEKE-ISRKTAVKKLRLPGK 456

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC+    + SELF+VEGDSAGGSAKQ R R+ QAILPLRGKILNV  A  DKM+++ +
Sbjct: 457 LADCTNTATEGSELFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVASATRDKMVANAQ 516

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +  LI A+G GIG  ++  + LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI  G 
Sbjct: 517 LSDLIQAIGCGIG-INYREDDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDGGH 575

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LY+  PPLY +T G    Y +DE   ++ L  +  +         KG+     + N + +
Sbjct: 576 LYLAVPPLYRMTHGSKTLYARDEAHRDELLKKEFHANAKVEIGRFKGL--GEMMPNQLKE 633

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                       P   K  + + V++      +   +   + SK   R  FI EK+E
Sbjct: 634 TT--------MDPR--KRTLLRVVLATEDRDSTATSVERLMGSKAEARFEFITEKAE 680



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREF 791
           + + R+KGLGEM  +QL ETT++P  R+LLRV +   D         RLMG + E R EF
Sbjct: 615 VEIGRFKGLGEMMPNQLKETTMDPRKRTLLRVVLATEDRDSTATSVERLMGSKAEARFEF 674

Query: 792 IQENS 796
           I E +
Sbjct: 675 ITEKA 679


>gi|227496601|ref|ZP_03926879.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833881|gb|EEH66264.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 690

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 275/642 (42%), Positives = 381/642 (59%), Gaps = 34/642 (5%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+ D I V
Sbjct: 23  SGEYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGFCDHIEV 81

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP D H  E     EV+MT LHAGGKF    Y VSGGLHGVG+S
Sbjct: 82  TIQADGGLKVVDNGRGIPVDEHPTEHRPTVEVVMTVLHAGGKFGGGGYAVSGGLHGVGIS 141

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +   ++R+G+++ MSF + G    PL V G     TGT   F P  +IF   
Sbjct: 142 VVNALSTRVDTEVRRQGHVWRMSFGDGGHPKTPL-VMGEETEATGTTQIFYPDPEIFETV 200

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---------------------REITMF 224
            F+Y+TL+ R ++++FLN  ++I+L D+R                         R+++  
Sbjct: 201 QFDYETLRRRFQQMAFLNKGLRITLTDEREGVNDDGDEITGDEAGTADDPVKGKRQVSYC 260

Query: 225 YKGGIEAFVSYLDRHKKPL--MQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFT 277
           Y  G+  +V++L++ KK        I  +  +       IS+++AM+W   Y E+V  + 
Sbjct: 261 YANGLHDYVAFLNKSKKVELIHPEIIDFEAEKALDETHGISLEIAMQWTSAYSESVHTYA 320

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G R+ALT  I  Y  +    K    ++ GDD REG T+V+S+K+ +P
Sbjct: 321 NTINTTEGGTHEEGFRTALTTLINKYGREKGLIKDRDDNLTGDDIREGLTAVISVKLSEP 380

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL ++E R+ V+  V D L  WL+ HP +AK ++ K   A+  R AAR+AR+
Sbjct: 381 QFEGQTKTKLGNTEARTFVQQTVYDRLGDWLDSHPADAKAVITKASQAAAARVAARKARE 440

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
            TRRKGVL+ AS+PGKL DCS R+  + E+F+VEGDSAGGSA  GR  E+QAI+P+RGKI
Sbjct: 441 ATRRKGVLESASMPGKLRDCSSRNAAECEIFIVEGDSAGGSAVGGRDPEHQAIMPIRGKI 500

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVE+AR D+ LSS  I +LITA GTGIG+D FDI+KLRY KI+IM DADVDG HI TLL
Sbjct: 501 LNVEKARLDRALSSDTIRSLITAFGTGIGED-FDISKLRYGKIVIMADADVDGQHIATLL 559

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           LT  FR M  LI  G  YI  PPLY +    +       ++  D L+         L  +
Sbjct: 560 LTLLFRYMRPLIEQGHTYIAMPPLYRLKWSNAEHEFAYSDAERDQLLRAGAEAGRRLPKE 619

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
               I +      ++D    +  +        +  +++A  +
Sbjct: 620 GG--IQRYKGLGEMNDHELWETTMDPAARILKQVTLDEAADA 659



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 56/88 (63%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
            LL      GR+    G  +QRYKGLGEMN  +LWETT++P  R L +V + +A+ AD+ 
Sbjct: 604 QLLRAGAEAGRRLPKEG-GIQRYKGLGEMNDHELWETTMDPAARILKQVTLDEAADADET 662

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+VE RR FIQ N+     LDI
Sbjct: 663 FSILMGDDVEQRRSFIQRNAADVRFLDI 690


>gi|313123649|ref|YP_004033908.1| DNA topoisomerase iv subunit b [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280212|gb|ADQ60931.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 643

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 262/602 (43%), Positives = 368/602 (61%), Gaps = 9/602 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I
Sbjct: 1   MPKNTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGQEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S TV D GRG+PT +H   G    EVI+T LHAGGKF +++YK SGGLHGVG
Sbjct: 60  NVTIHEDNSVTVQDFGRGMPTGMHAS-GRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSS++K+ + R+G  YE  F N G     L   G+    TGT +TF P   IFS
Sbjct: 119 SSVVNALSSYMKVHVVRDGKAYEEEFKNGGHPIGTLRCLGATEEKTGTTITFKPDPMIFS 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +NY+T+Q R+RE +FL   V+ +L D+R+P        Y  GIE+FVSYL+   K  
Sbjct: 179 TTKYNYETIQERIRESAFLLKGVKFTLTDERTP-NHHDVFQYDDGIESFVSYLNEG-KGT 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +      +GS+D + I+ A +++D Y EN + F NN+   DGG+H  G RS  TR    Y
Sbjct: 237 IGKVFYFEGSQDGMEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSGFTRAFNDY 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
            +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V 
Sbjct: 297 AKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSIVY 356

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420
           + LS +L E+   A+ +VKK L A   R+AA++ARD +R  K       L GKL     R
Sbjct: 357 EKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSGKLTPAQSR 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN +RA+   +  ++EI T+I  
Sbjct: 417 NPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNEEINTMIHT 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G   F +    Y KIIIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PP
Sbjct: 477 IGAGVG-TEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGKVYIALPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I++ ++  Y   +E  ++          ++ F     + +       ++   ++   
Sbjct: 536 LYRISKKQTNLYAWTDEERDEEEKKVGKGYALQRFKGLGEMNADQLWETTMNPESRMLIR 595

Query: 601 IK 602
           ++
Sbjct: 596 VR 597



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/64 (57%), Positives = 51/64 (79%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG ++QR+KGLGEMNA QLWETT+NP++R L+RV+I DA  A+   + LMGD+   RR++
Sbjct: 563 KGYALQRFKGLGEMNADQLWETTMNPESRMLIRVRIDDAQLAERRVTTLMGDQASARRKW 622

Query: 792 IQEN 795
           I+EN
Sbjct: 623 IEEN 626


>gi|308189672|ref|YP_003922603.1| topoisomerase IV, subunit B [Mycoplasma fermentans JER]
 gi|307624414|gb|ADN68719.1| topoisomerase IV, subunit B [Mycoplasma fermentans JER]
          Length = 637

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 266/590 (45%), Positives = 362/590 (61%), Gaps = 16/590 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             YD  SIQ LKGL+AV+KRP MYIG TD  +GLHH+I+E++DN+IDE+L GYA+ I+VT
Sbjct: 2   QKYDESSIQQLKGLEAVRKRPGMYIGSTD-VNGLHHLIWEIVDNSIDEALAGYANEISVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GS  V DNGRGIP       G SA E++ T LHAGGKFN+ +YK SGGLHGVG SV
Sbjct: 61  LTKNGSVKVMDNGRGIPVGKTPS-GKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L + + R+  IYE  F NG       +  G+  N  GT V F P+ +IF    
Sbjct: 120 VNALSTKLIVTVYRDKKIYETIFENGDNIVQRTLEVGNT-NKHGTMVEFWPNYEIFKRAK 178

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+T+  RLRE  FL   ++I   D+ S   RE    Y+ G+ AFV +++  K  L   
Sbjct: 179 FSYETIAERLRESCFLIGGLRIHFKDEISD--RETEFMYEDGLHAFVDFINDSKNALG-D 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
               + ++ +I ++   ++ D Y+E VL F NN+  KDGGTH  GL+SALT+    +  +
Sbjct: 236 IKTFKETKRDIEVECGFQYTDSYNETVLSFVNNVKTKDGGTHEIGLKSALTKTFNEFALE 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364
               K  K +  GDD REG T +LS+K+P+    F SQTKEKL + E + VVE  V+   
Sbjct: 296 EKALK-GKNTFDGDDIREGLTIILSVKIPEKLLEFVSQTKEKLGTPEAKGVVEEIVSKNF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRAR--DLTRRKGVLDIASLPGKLADCSERDP 422
             W+ E+   AK I++K+  AS  R AAR+AR    + +  + +   L GKL     + P
Sbjct: 355 KIWINENKPLAKKILEKIKRASESRAAARKARVEARSTKNALKEKQILSGKLTPAQSKIP 414

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            + ELFLVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR  ++L ++EIGT+I  +G
Sbjct: 415 AEKELFLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLFEILKNEEIGTIINTIG 474

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G+G D FD+ K++Y K++IMTDAD DGAHI+ LLLTFFFR M  L+ NG +YI  PPL+
Sbjct: 475 AGVG-DEFDLKKVQYGKVVIMTDADTDGAHIQILLLTFFFRHMRQLVENGMVYIALPPLF 533

Query: 543 GITR---GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +T     K + Y  DE  L + L   +            G ++ + L  
Sbjct: 534 KLTSTRGKKEVLYAWDENELRELLQLPNFKNAEVQRYKGLGEMNADQLWE 583



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K   +QRYKGLGEMNA QLWETT+NP TR+L++VKI DA+ A+   S LMGD VEPR+E+
Sbjct: 563 KNAEVQRYKGLGEMNADQLWETTMNPITRTLVQVKIEDAALAERRVSTLMGDNVEPRKEW 622

Query: 792 IQEN 795
           I +N
Sbjct: 623 INKN 626


>gi|77411131|ref|ZP_00787484.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111]
 gi|77162854|gb|EAO73812.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111]
          Length = 620

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 260/598 (43%), Positives = 386/598 (64%), Gaps = 6/598 (1%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
            RP MYIG T  E GLHH+++E++DN+IDE+L G+A  I V +  D S TV D+GRGIP 
Sbjct: 1   MRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A E + T LHAGGKF    YKVSGGLHGVG SVVNALS+ L +++ + G +
Sbjct: 60  DIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKV 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNS 204
           +   +  G++ N L + G   + +GT V F P  +IF+    F++D L  R++EL+FLN 
Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            ++IS+ DKR  +  E    Y+GGI ++V +++ +K+ + ++PI   G  D IS+++AM+
Sbjct: 179 GLRISISDKREGQEVEKEYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGISVEVAMQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +  GY E V+ F NNI   +GGTH  G R+ALTR I  Y +K+   K+++ ++ G+D RE
Sbjct: 239 YTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+S+K P+P+F  QTK KL +SEV  +     ++  + +L E+P  AK IV+K + 
Sbjct: 299 GLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGIL 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR++TR+K  L+I++LPGKLADCS  + + +ELF+VEGDSA GSAK GR+
Sbjct: 359 ASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAEGSAKSGRN 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG G D FD++K+RY K++IMT
Sbjct: 419 REFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGAD-FDVSKVRYQKLVIMT 477

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DADVDGAHIRTLLLT  +R M  ++  G++YI +PP+YG+ +  S      +  +     
Sbjct: 478 DADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGV-KVGSEIKAYIQPGVNQ-EE 535

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               + +      SK  + +      +DD    +  +        +  ++ A  +   
Sbjct: 536 ELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKI 593



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I + I  G   +       LDT +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 518 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHQLWETTMDPE 575

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+ N++ S LDI
Sbjct: 576 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEANAVYSNLDI 620


>gi|184155379|ref|YP_001843719.1| DNA topoisomerase IV subunit B [Lactobacillus fermentum IFO 3956]
 gi|183226723|dbj|BAG27239.1| topoisomerase IV subunit B [Lactobacillus fermentum IFO 3956]
          Length = 665

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 265/660 (40%), Positives = 368/660 (55%), Gaps = 30/660 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       YDA SI+ILKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+
Sbjct: 1   MAQEEYK--YDASSIKILKGLEAVRKRPGMYIGSTDAH-GLHHLVYEIVDNAVDEALSGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119
            D I VT+  D + TV D+GRG+P  +H E G    EVIMT LHAGGKF Q   YK SGG
Sbjct: 58  GDEINVTIEPDNAITVQDHGRGMPVGMH-ESGKPTPEVIMTILHAGGKFGQADGYKSSGG 116

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSS L L I R+   Y+  F + G     L   G     +GT VTF P 
Sbjct: 117 LHGVGASVVNALSSKLTLTIVRDHVRYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS   ++Y TL  RLRE +FL   V+I+L DKR    +E    +  GIE FV+YL+ 
Sbjct: 177 PTIFSTTVYDYQTLARRLRESAFLLKGVKITLTDKREGMEQEEVFQFANGIEDFVAYLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             K  +       G++D + +D+A ++NDGY EN+L F NN+    GGTH  G R A T+
Sbjct: 237 D-KDTLGKVFSFTGTQDGVEVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  K    K+  +++ G D REG T+V+S+++P+   +F  QTK KL + E R +V
Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           ++ V++ L   L E+   A+ ++K       +       R +  + ++      +L GKL
Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++  K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D ++ ++E+
Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +
Sbjct: 476 NTIIYTVGAGVG-TEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN- 589
           YI  PPLY +     +   + Y    + L   L  +             G ++ + L   
Sbjct: 535 YIAMPPLYRLQKGRGKNTKITYAWTNDELTK-LTKKGSKGTSLQRFKGLGEMNADQLWET 593

Query: 590 ------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                        I+DA   +K I     N  +   E    +  F    DQE +  + +K
Sbjct: 594 TMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQNVHFTISDDQEADALVEAK 653



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  +V    +L   +  +       +     N D ++           +    
Sbjct: 458 VLNTEKAKLDDVMKNEELNTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILL 517

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      I + R+      +  L    G   KIT       L  +   G KG S+Q
Sbjct: 518 LTFFYKYMRPMIEAGRVYIAMPPLYRLQKGRGKNTKITYAWTNDELTKLTKKGSKGTSLQ 577

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   + LMG++VEPRRE+I +N
Sbjct: 578 RFKGLGEMNADQLWETTMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQN 635


>gi|315646515|ref|ZP_07899633.1| DNA topoisomerase IV, B subunit [Paenibacillus vortex V453]
 gi|315278158|gb|EFU41478.1| DNA topoisomerase IV, B subunit [Paenibacillus vortex V453]
          Length = 659

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 262/598 (43%), Positives = 367/598 (61%), Gaps = 25/598 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S YDAD IQ+L+GL AV+KRP MYIG T   SGLHH+++E++DNA+DE L  Y   I +T
Sbjct: 20  SGYDADDIQVLEGLVAVRKRPGMYIGSTSS-SGLHHLVWEIVDNAVDEHLAKYCSRIEIT 78

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS TV DNGRGIPT +H + GI   +V+ T LHAGGKF    YK SGGLHGVG SV
Sbjct: 79  LHKDGSATVYDNGRGIPTGMH-KTGIPTPQVVFTILHAGGKFGGSGYKKSGGLHGVGASV 137

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGTEVTFLP 177
            NALS WL++ I REG ++   F            G     L V G+  N TGT++TF P
Sbjct: 138 TNALSEWLEVEIYREGKVHRQRFEYWQDAKGKEHVGEPVTGLEVHGNT-NKTGTKITFKP 196

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            + +F+     NYDTL  RL+E++FLNS ++I L D+RS        FY+GG   FV +L
Sbjct: 197 DARVFTTGTHLNYDTLAERLQEIAFLNSGLRIVLKDERSG--NGEEFFYEGGASQFVQFL 254

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +  K  L    I     +D+I +++A+++N GY E +  F N+IP + GGTH +G ++A 
Sbjct: 255 NEGKDVLH-DVIHFYAEKDDIEVEIALQYNAGYTETLASFVNSIPTRGGGTHETGFKTAY 313

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y  K+   K+  +++ G+D REG  +V+S+KM +  F  QTK++L S+  RS V
Sbjct: 314 TRVMNDYARKNNLLKEKDKNLEGNDLREGMMTVISVKMAEVEFVGQTKDQLGSASARSTV 373

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLA 415
           +S V + +  +LEE+P  A+ ++KK + AS  R+AAR+ARD  R  K   + ++L GKL 
Sbjct: 374 DSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREAARKARDEMRSGKKRSESSNLGGKLT 433

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +D  ++ELF+VEGDSAGGSAKQGR  + QAILPL+GK +N E+++   +L + E  
Sbjct: 434 PAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEKSKLADILKNDEYR 493

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            +++A+G GIG   F      Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y
Sbjct: 494 AIVSAIGAGIG-TEFTAGDSNYSKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIDEGRVY 552

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + +PPLY I     + ++++Y   E  L +YL                G ++   L  
Sbjct: 553 LAQPPLYKIASKSGKLETIRYAWTEGQLANYLKE--FKNYELQRYKGLGEMNPEQLWE 608



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 105/295 (35%), Gaps = 11/295 (3%)

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D  G+      +     +   +       + +  L    +    +     ++ ++    +
Sbjct: 362 DQLGSASARSTVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREA-ARKARDEMRSGK 420

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
             SE   L        SK+  R  +                  K      +     N E 
Sbjct: 421 KRSESSNLGGKLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEK 480

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
            +  ++    +    ++ I       +    +N   ++           +     + +F 
Sbjct: 481 SKLADILKNDEYRAIVSAIGAGIGTEFTAGDSNYSKIIIMTDADTDGAHI--QVLLLTFF 538

Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKITGPC------SLLDTIFSIGRKGISMQRYK 740
            +Y +   +                   K+           L + +     K   +QRYK
Sbjct: 539 YRYMKPLIDEGRVYLAQPPLYKIASKSGKLETIRYAWTEGQLANYLKEF--KNYELQRYK 596

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GLGEMN  QLWETT+NP++R+LL+V+I DA++A+   S LMGD+V+PR+ +I EN
Sbjct: 597 GLGEMNPEQLWETTMNPESRTLLQVQIDDAAKAERRVSTLMGDKVDPRKRWIVEN 651


>gi|300812413|ref|ZP_07092843.1| DNA topoisomerase IV, B subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496580|gb|EFK31672.1| DNA topoisomerase IV, B subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 643

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 262/602 (43%), Positives = 369/602 (61%), Gaps = 9/602 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ G+   I
Sbjct: 1   MPKNTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGQEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S TV D GRG+PT +H   G    EVI+T LHAGGKF +++YK SGGLHGVG
Sbjct: 60  NVTIHEDNSVTVQDFGRGMPTGMHAS-GRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSS++K+ + R+G  YE  F N G     L   G+    TGT +TF P   IFS
Sbjct: 119 SSVVNALSSYMKVHVVRDGKAYEEEFQNGGHPIGTLRCLGATKEKTGTTITFKPDPIIFS 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +NY+T+Q R+RE +FL   V+ +L D+R+P+       Y  GIE+FVSYL+   K  
Sbjct: 179 TTKYNYETIQERIRESAFLLKGVKFTLTDERTPK-HHDVFQYDDGIESFVSYLNEG-KGT 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +      +GS+D + I+ A +++D Y EN + F NN+   DGG+H  G RS  TR    Y
Sbjct: 237 IGKVFCFEGSQDGMEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSGFTRAFNDY 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
            +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V+S V 
Sbjct: 297 AKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSIVY 356

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420
           + LS +L E+   A+ +VKK L A   R+AA++ARD +R  K       L GKL     R
Sbjct: 357 EKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSGKLTPAQSR 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN +RA+   +  ++EI T+I  
Sbjct: 417 NPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNEEINTMIHT 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G   F +    Y KIIIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PP
Sbjct: 477 IGAGVG-TEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGKVYIALPP 535

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I++ ++  Y   +E  ++          ++ F     + +       ++   ++   
Sbjct: 536 LYRISKKQTNLYAWTDEERDEDEKKVGKGYALQRFKGLGEMNADQLWETTMNPESRMLIR 595

Query: 601 IK 602
           ++
Sbjct: 596 VR 597



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   ++ I       +    +N D ++           +    
Sbjct: 453 VLNTQRAKLADIFKNEEINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHI--QI 510

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC-SLLDTIFSIGRKGISMQRY 739
            + +F  +Y R      +           +  +  +        D       KG ++QR+
Sbjct: 511 LLLTFFYRYMRPMIEAGKVYIALPPLYRISKKQTNLYAWTDEERDEDEKKVGKGYALQRF 570

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           KGLGEMNA QLWETT+NP++R L+RV+I DA  A+   + LMGD+   RR++I+EN
Sbjct: 571 KGLGEMNADQLWETTMNPESRMLIRVRIDDAQLAERRVTTLMGDQASARRKWIEEN 626


>gi|227515151|ref|ZP_03945200.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227086483|gb|EEI21795.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|299783206|gb|ADJ41204.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum CECT
           5716]
          Length = 665

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 265/660 (40%), Positives = 369/660 (55%), Gaps = 30/660 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       YDA SI+ILKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+
Sbjct: 1   MAQEEYK--YDASSIKILKGLEAVRKRPGMYIGSTDAH-GLHHLVYEIVDNAVDEALSGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119
            D I VT+  D + TV D+GRG+P  +H E G    EVIMT LHAGGKF Q   YK SGG
Sbjct: 58  GDEINVTIEPDNAITVQDHGRGMPVGMH-ESGKPTPEVIMTILHAGGKFGQADGYKSSGG 116

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSS L L I R+   Y+  F + G     L   G     +GT VTF P 
Sbjct: 117 LHGVGASVVNALSSKLTLTIVRDHVRYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS   ++Y TL  RLRE +FL   V+I+L DKR    +E    ++ GIE FV+YL+ 
Sbjct: 177 PTIFSTTVYDYQTLARRLRESAFLLKGVKITLTDKREGMEQEEVFQFENGIEDFVAYLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             K  +       G++D + +D+A ++NDGY EN+L F NN+    GGTH  G R A T+
Sbjct: 237 D-KDTLGKVFSFTGTQDGVEVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  K    K+  +++ G D REG T+V+S+++P+   +F  QTK KL + E R +V
Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           ++ V++ L   L E+   A+ ++K       +       R +  + ++      +L GKL
Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++  K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D ++ ++E+
Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +
Sbjct: 476 NTIIYTVGAGVG-TEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN- 589
           YI  PPLY +     +   + Y    + L   L  +             G ++ + L   
Sbjct: 535 YIAMPPLYRLQKGRGKNTKITYAWTNDELTK-LTKKGSKGTSLQRFKGLGEMNADQLWET 593

Query: 590 ------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                        I+DA   +K I     N  +   E    +  F    DQE +  + +K
Sbjct: 594 TMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQNVHFTISDDQEADALVEAK 653



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  +V    +L   +  +       +     N D ++           +    
Sbjct: 458 VLNTEKAKLDDVMKNEELNTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILL 517

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      I + R+      +  L    G   KIT       L  +   G KG S+Q
Sbjct: 518 LTFFYKYMRPMIEAGRVYIAMPPLYRLQKGRGKNTKITYAWTNDELTKLTKKGSKGTSLQ 577

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   + LMG++VEPRRE+I +N
Sbjct: 578 RFKGLGEMNADQLWETTMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQN 635


>gi|295426266|ref|ZP_06818926.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064005|gb|EFG54953.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus
           amylolyticus DSM 11664]
          Length = 662

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 258/605 (42%), Positives = 372/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++YD  SIQIL GL+AV+KRP MYIG TD   GL+ ++YE++DN++DE++ GY   I 
Sbjct: 17  KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGYGKEIN 75

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D GRG+PT +H + G    EVI+T LHAGGKF +++YK SGGLHGVG 
Sbjct: 76  VTIHKDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 134

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS+LK+R+ R G  YE  F N G     L   G   + TGT +TF P + IFS 
Sbjct: 135 SVVNALSSYLKVRVVRGGKAYEEEFQNGGHPIGTLKCVGETNDKTGTTITFKPDATIFST 194

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T+Q R+RE +FL   V+ +L D+R PE       Y  GI++FV YL+   K  +
Sbjct: 195 TKYKYETIQERIRESAFLLKGVKFTLTDERDPE-HHDVFQYDDGIKSFVKYLNEG-KGTI 252

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D + I+ + +++DGY EN++ F NN+   DGGTH  G RS  TR    Y 
Sbjct: 253 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTADGGTHEVGARSGFTRAFNDYA 312

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K     K  +++ G D REG ++VLS+K+P+    F  QTK KL + + RS V++ V +
Sbjct: 313 KKQGLFTKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDALVYE 372

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     ++
Sbjct: 373 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSKN 432

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 433 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 492

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   F ++   Y K+IIMTDAD DGAHI+ LLLTFF+R M  +I  G +YI  PPL
Sbjct: 493 GAGVG-TEFKVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKVYIALPPL 551

Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y + +G+     ++Y   +E L +          ++ F     + ++   +  ++   ++
Sbjct: 552 YRLQKGRGKKAEIKYDWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 611

Query: 598 DKLIK 602
              ++
Sbjct: 612 LIRVR 616



 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 7/121 (5%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKIT---GPCSLLDTIFSIGRKGI 734
            + +F  +Y R    + +               G K +I        L +    +GR G 
Sbjct: 526 LLLTFFYRYMRPMIEKGKVYIALPPLYRLQKGRGKKAEIKYDWTDEELAEDEKKMGR-GY 584

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QR+KGLGEMNA QLW+TT+NP++R L+RV+I DA+ A+   + LMGD+V  RR++I+E
Sbjct: 585 SLQRFKGLGEMNAEQLWQTTMNPESRMLIRVRIDDAALAERRVTTLMGDKVAARRKWIEE 644

Query: 795 N 795
           N
Sbjct: 645 N 645


>gi|154508246|ref|ZP_02043888.1| hypothetical protein ACTODO_00740 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797880|gb|EDN80300.1| hypothetical protein ACTODO_00740 [Actinomyces odontolyticus ATCC
           17982]
          Length = 674

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 276/649 (42%), Positives = 381/649 (58%), Gaps = 36/649 (5%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+DN +N     SY A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+
Sbjct: 1   MADNEKNAEGEQSYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L GYAD I VT+  DG   V DNGRGIP D H  E     EV+MT LHAGGKF    Y V
Sbjct: 60  LAGYADHIEVTIQEDGGIKVVDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTF 175
           SGGLHGVG+SVVNALS+ +   I+R+G ++ MSF N G    PL   G   ++TGT   F
Sbjct: 120 SGGLHGVGISVVNALSTRVNTEIRRQGYVWRMSFANGGTPITPLER-GEETDETGTTQVF 178

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------S 215
            P  +IF   +F+++TL+ R ++++FLN  ++I+L D+R                    +
Sbjct: 179 YPDPEIFETVEFDFETLRQRFQQMAFLNKGLRITLTDEREFATAEGDEIAGGEEALDKKT 238

Query: 216 PEPREITMFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHE 271
              R ++  Y+ G+  +V Y    +  + +    I  +       +S+++AM+W   Y  
Sbjct: 239 KGHRTVSYCYEHGLRDYVEYLDSAKKSETINNEIIDFEAENDEGTMSVEIAMQWTTAYSS 298

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +V  F N I   +GG H  G R+ALT  +  Y  +    +    ++ GDD REG T+V+S
Sbjct: 299 SVHTFANTINTTEGGMHEEGFRTALTSLVNRYGREKGIIRDKDDNLTGDDVREGLTAVIS 358

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           IK+ +P+F  QTK KL ++E R+ V   V   L+ W + HP +AK I+ K   A   R A
Sbjct: 359 IKLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIINKGQAAQAARVA 418

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR+ TRRKGVL+ AS+PGKL DCS R P + E+F+VEGDSAGGSA  GR  E QAIL
Sbjct: 419 ARKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAIL 478

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           P+RGKILNVE+AR D+ LSS  I +LITA GTGIG+D FDI+KLRY KI+IM DADVDG 
Sbjct: 479 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDISKLRYGKIVIMADADVDGQ 537

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSE 570
           HI TLLLT  FR M  LI  G  +I  PPLY I    +   +   ++  ++     +   
Sbjct: 538 HIATLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDEL---LAAGS 594

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
                   +G I +      ++D    +  +        +  +++A  +
Sbjct: 595 AANRRLPKEGGIQRYKGLGEMNDHELWETTMDPASRILKQVTLDEAADA 643



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LWETT++P +R L +V + +A+ AD+ F+ LMGD+V+ RR FIQ N
Sbjct: 606 IQRYKGLGEMNDHELWETTMDPASRILKQVTLDEAADADETFTILMGDDVDRRRTFIQRN 665

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 666 ATDVRFLDI 674


>gi|603237|gb|AAA57341.1| DNA gyrase B subunit [Mycoplasma gallisepticum]
 gi|1583652|prf||2121321A DNA gyrase:SUBUNIT=B
          Length = 646

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/598 (40%), Positives = 356/598 (59%), Gaps = 16/598 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +N +   Y + SI++L+GL AV+KRP MYIG TD + GLHHMI+E++DN++DE + GY  
Sbjct: 2   NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTD-QKGLHHMIWEIIDNSVDEMMAGYGT 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + +TL  +    V D+GRGIP D+H++   S  E ++T LHAGGKF+  +Y +SGGLHG
Sbjct: 61  TVKLTLKDNYLVEVEDDGRGIPVDIHEKTNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALSS  K+ + R+  I+ + F + G+   PL + G+     GT + F+P   I
Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVSLKPLEIIGTDNKKQGTRIQFVPDFSI 180

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
               +++   +  R+ +L+FLN  ++    D+R+ +  +    Y+GGI+ +V  L+  K+
Sbjct: 181 MEQFEYDETIISDRIEQLAFLNKGIKFIFNDERTDKKTKQEWLYEGGIKQYVENLNASKE 240

Query: 242 PLMQSPIRIQGS----------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           P++   I  +               + +++A ++ +GY+ +   F NNI    GGTH  G
Sbjct: 241 PIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQGGTHEEG 300

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR    R     +EK    K+    +  +D  EG T+++SIK  +P++  QTK++L ++E
Sbjct: 301 LRMLFIRSYRYALEK-KFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKDRLGNTE 359

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR    S V++ L  +  E+P EA  I  K + A   R  +  A   + RK   + ASLP
Sbjct: 360 VREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAA-LESARKSPFESASLP 418

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC+ +D   SEL++VEGDSAGGSAK GR R  QAILPLRGK+LNVE+A  +K+  +
Sbjct: 419 GKLADCTTKDG-ISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHEKIFKN 477

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +EI TLITA+G G+    F ++K+RY+KIIIMTDADVDGAHIR LLLTFFFR M  LI  
Sbjct: 478 EEIRTLITAIGAGV-NPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFPLIEK 536

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           G +YI +PPLY ++  K  +Y+  +  LE++                 G +    L  
Sbjct: 537 GHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQNPNVRYELQRYKGLGEMDDVQLWE 594



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 5/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ--EQFVLE 678
           V N E      +    ++   +  I       +       + ++      V      +L 
Sbjct: 463 VLNVEKANHEKIFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILL 522

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738
            +  F             I +  L  +S         I     L +           +QR
Sbjct: 523 LTFFFRHMFPLIEKGHVYIAQPPLYRVSYNKQNKY--IYSDAQLEEWKNQNPNVRYELQR 580

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P+ R LL+V I DA+ AD  FS LMGDEV PRR+FI++N+  
Sbjct: 581 YKGLGEMDDVQLWETTMDPEKRILLKVSINDAANADKTFSLLMGDEVSPRRDFIEKNAKS 640

Query: 799 S-ALD 802
              +D
Sbjct: 641 VKNID 645


>gi|300742652|ref|ZP_07072673.1| DNA gyrase, B subunit [Rothia dentocariosa M567]
 gi|300381837|gb|EFJ78399.1| DNA gyrase, B subunit [Rothia dentocariosa M567]
          Length = 676

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 268/617 (43%), Positives = 370/617 (59%), Gaps = 37/617 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   Y A  I +L+GL+AV+KRP MYIG T  E GLHH++YEV+DN++DE+L GY
Sbjct: 1   MTSE-QPHEYGASDITVLEGLEAVRKRPGMYIGST-TERGLHHLVYEVVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VT+  DG   V D+GRGIP D H  E  S  EV+MT LHAGGKF    Y VSGGL
Sbjct: 59  ASHIEVTIQADGGVRVQDDGRGIPVDEHPTEHKSTVEVVMTVLHAGGKFGGGGYAVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG+SVVNALS  +   + R+G  + +SF N GI D PL   G A   TGT  TF P  
Sbjct: 119 HGVGISVVNALSKKVITEVHRQGYSWHISFANGGIPDGPLRR-GKASQKTGTIQTFYPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------ 215
           +IF   +F+++TL+ R ++++FLN  + ISL D+R                         
Sbjct: 178 EIFETVEFDFETLRARFQQMAFLNKGLTISLTDERDQFEGGDEVAEEEDEKDKVLPLNRV 237

Query: 216 ----PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDG 268
                  R +T  Y  G+  +V +     K  + +  I  +      ++++++AM+W   
Sbjct: 238 GANAEGHRTVTYRYDNGLFDYVHFLNAGSKTVINEDIIYFEAEDTVRHMALEVAMQWTGS 297

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  + N I   +GGTH  G R+ALT  +  Y  ++   +    ++ G+D REG T+
Sbjct: 298 YKESVHSYANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTA 357

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+SIK+ +P+F  QTK KL +SE +S  +  +ND ++ W + +P  AK +V++ + A+  
Sbjct: 358 VISIKISEPQFEGQTKTKLGNSEAKSFTQREINDHMADWFDRNPAVAKDVVRRAITAAQA 417

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+ TRRKG+L+ +S+PGKL DC+ +DP  SE++LVEGDSAGGSA QGR   +Q
Sbjct: 418 RMAARKARETTRRKGLLETSSMPGKLKDCASKDPSISEIYLVEGDSAGGSAVQGRDPNSQ 477

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKILNVERAR D+ LS+ EI  +ITA GTGIG D FD+ K RYHKI++M DADV
Sbjct: 478 AILPLRGKILNVERARLDRALSNAEIQAMITAFGTGIG-DDFDLEKARYHKIVLMADADV 536

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  LI  G++Y+ +PPLY I    +   YV  +   ++ L    
Sbjct: 537 DGQHITTLLLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVFSDAERDEALARGQ 596

Query: 568 LSEEIELFCDSKGVISK 584
              +     +       
Sbjct: 597 AKNQRLPKDNGIQRYKG 613



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LW+TT++P  R+LL+VK+ DA+ AD +FS LMG++VE RR+FIQ+N
Sbjct: 608 IQRYKGLGEMDYTELWDTTMDPQRRTLLQVKMEDAAAADQIFSVLMGEDVEARRDFIQQN 667

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 668 AKDIRFLDI 676


>gi|183238622|gb|ACC60952.1| DNA gyrase subunit B [Mycoplasma feliminutum]
          Length = 549

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 251/550 (45%), Positives = 355/550 (64%), Gaps = 4/550 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G+ GLHH++YE++DN+IDE+L G+A  + V +  D    V D+GRGIP D+H +   +  
Sbjct: 3   GKKGLHHLVYEIVDNSIDEALAGFATRVDVEILKDNYIRVKDDGRGIPVDIHPKTNKTTV 62

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKFN  +YKVSGGLHGVG SVVNALSS+LK+ + R+G  Y   +  G   
Sbjct: 63  ETVLTVLHAGGKFNNDAYKVSGGLHGVGASVVNALSSYLKVEVFRDGFYYYQEYSIGKPT 122

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L     +    GT +TF P  DIF     F YD L+ RL++L+FLN  + I+L D+R 
Sbjct: 123 IELKK-EPSNLSNGTIITFKPDVDIFKETTEFEYDILKQRLQQLAFLNKGLIITLKDQRQ 181

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +P E T  Y GG+  +V++L++ K+ L + PI I+ + ++I++++A+ +N+ +  N+  
Sbjct: 182 EQPIEDTFVYSGGLLEYVNFLNKGKETLNKEPIYIEKTENDINVEIALLYNNEFKANIFS 241

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI   +GG H  G + AL+R I  Y   +    K    + G+D REG   V+S+K+ 
Sbjct: 242 FANNIATPEGGMHEDGFKMALSRIINRYGNNNN-LFKKAEQITGEDTREGLVCVISVKLK 300

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P F  QTK KL + EV+ +V +   + L  +L E+P EAK+I++K++ AS  R+AAR+A
Sbjct: 301 QPEFEGQTKSKLGNPEVKPLVSNIFGEQLERYLMENPQEAKLIIEKIILASNARNAARKA 360

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+ TRRK  LD      KL+DC  ++   +ELF+VEGDSAGGSAKQGR  + QAILPLRG
Sbjct: 361 REATRRKSPLDTLGFASKLSDCRTKNADIAELFIVEGDSAGGSAKQGRDSKIQAILPLRG 420

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNVE+AR DK+ ++ E+ +LI ALG GIG D FD +K RY KI+IMTDADVDGAHIRT
Sbjct: 421 KVLNVEKAREDKVYANNELKSLIMALGCGIG-DEFDASKTRYKKIVIMTDADVDGAHIRT 479

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLTFFFR M  +I  G+LYI +PPL+ I+ GK ++YV  ++ LE  L   +        
Sbjct: 480 LLLTFFFRYMKDIIQKGYLYIAQPPLFKISSGKKIKYVYTDQELEKELKELNDQRYNLQR 539

Query: 576 CDSKGVISKN 585
               G ++  
Sbjct: 540 YKGLGEMNPE 549



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 2/129 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +E  V   ++L + +  +       +  S      +V      V    +    
Sbjct: 422 VLNVEKAREDKVYANNELKSLIMALGCGIGDEFDASKTRYKKIVIMTDADVDGAHIRTLL 481

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRY 739
             F F      I    +       L  I +G KIK +     L   +  +  +  ++QRY
Sbjct: 482 LTFFFRYMKDIIQKGYLY-IAQPPLFKISSGKKIKYVYTDQELEKELKELNDQRYNLQRY 540

Query: 740 KGLGEMNAS 748
           KGLGEMN  
Sbjct: 541 KGLGEMNPE 549


>gi|83280994|dbj|BAE53571.1| gyrase beta subunit [Thermoplasma acidophilum]
          Length = 641

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 257/596 (43%), Positives = 370/596 (62%), Gaps = 18/596 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD+  IQIL+GL AV+K P MYIG TD   GLHH++YEV+DN++DES+ GY   I
Sbjct: 1   MTEDNYDSSQIQILEGLKAVRKVPGMYIGSTD-TRGLHHLVYEVVDNSVDESVAGYCSRI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V +  DGS TV D+GRGIP D+H +      E+++T LH+G KF++K YK++GGLHGVG
Sbjct: 60  YVVMGSDGSITVEDDGRGIPVDIHPKYNRPGLEIVLTELHSGAKFDKKVYKLTGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----------TGSAGNDTGTEV 173
           + VVNALS  L   +KR+G IY   F  GI  + L                   + G  +
Sbjct: 120 LHVVNALSKKLIAVVKRDGKIYYDIFEQGIPVSGLKTASDVSEIEKLGIKIQFPEHGAII 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P  DIF   +F+Y+T+  RL +LS+LN  + I+ +D+ S   R+  + ++GG+   V
Sbjct: 180 KFYPDPDIFETTEFSYETILARLTDLSYLNPQLTITFLDEASG--RKDILHHEGGLIELV 237

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L   K+ LM  P+ ++   D+  ++ ++ +     E ++ F NNI   +GGTH++G  
Sbjct: 238 RHLSEGKEALM-EPLYLKEEVDSHMVEFSLLYTTDVQETLMSFVNNISTPEGGTHVAGFH 296

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L+R I  Y   +   K  +  + GDD +EG  +VL +KM +P+F  QTK KL +S VR
Sbjct: 297 QGLSRAIQDYARSNNKIKGVE-DITGDDVKEGVIAVLHVKMQNPQFEGQTKSKLGNSSVR 355

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V+S     +  ++E +P  A +I+ +VL A+  R+A+R+A++L RRK  L+   LPGK
Sbjct: 356 GIVQSVTAKFMKTFMETNPHVADVIIGRVLSAAAAREASRKAKELVRRKSALEGGGLPGK 415

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  DP  SEL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNVE+A   K++ ++ 
Sbjct: 416 LADCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKVVENEI 475

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  L+ A+GTG+ +D  +  KLRY KIIIMTDADVDGAHIRTLLLTFFFR   SLI NG 
Sbjct: 476 IHDLVVAIGTGVKEDL-NPKKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSLIENGN 534

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           ++  +PPLY I +G++++YV  +E  E        +  I       G ++   L  
Sbjct: 535 VFFAEPPLYRIQKGQNVRYVYSDEEKERVSREFGPN-AIIQRFKGLGEMNPEQLWE 589



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 15/236 (6%)

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
                   +S+  I + D         +  +             +E+A    V   E   
Sbjct: 418 DCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKVVENEIIH 477

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
           ++ V++ + +   LN    +  K    +  + D    R               + +F  +
Sbjct: 478 DLVVAIGTGVKEDLNPKKLRYGKIIIMTDADVDGAHIRT-------------LLLTFFFR 524

Query: 689 YKRIFSNRIEENYLTILSL-ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747
           Y R         +       I  G  ++        + +         +QR+KGLGEMN 
Sbjct: 525 YARSLIENGNVFFAEPPLYRIQKGQNVRYVYSDEEKERVSREFGPNAIIQRFKGLGEMNP 584

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802
            QLWETT+NP TR L++V I DA +A+ +F+ LMG++VEPRR+FI+EN++ +  +D
Sbjct: 585 EQLWETTMNPKTRKLVQVTIEDAEEAERIFTILMGEKVEPRRKFIEENAVYAENID 640


>gi|228982416|ref|ZP_04142675.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
 gi|228776599|gb|EEM24907.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
          Length = 644

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 255/651 (39%), Positives = 377/651 (57%), Gaps = 19/651 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y+ DSI+IL+GL+AV+KRP MYIG T+   GLHHMI E+ DN++DE++ GY D I  
Sbjct: 2   SEEYNGDSIEILEGLEAVRKRPGMYIGSTN-TKGLHHMIKEITDNSVDEAVAGYCDEIIT 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            ++ D S ++ DNGRG+P D+H++ G S A VI T LHAGGKF    YKVSGGLHGVG S
Sbjct: 61  RIHKDNSISIEDNGRGVPVDVHRKAGYSTARVIYTILHAGGKFGGNGYKVSGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-----AGNDTGTEVTFLPSSD 180
           VVNALSS+L++ I R G IY+  + N G+   PL   G        +  GT+V FLP + 
Sbjct: 121 VVNALSSYLEVEIHRNGKIYKDRYENGGVPVIPLTENGELPSIGDTDRRGTKVRFLPDNT 180

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           I    ++N +T++ RL+E +FLN  ++   ID+R+    E T   K GI   V  ++   
Sbjct: 181 ILETTEWNIETIEKRLQESAFLNKGLKFVFIDERTG--YEKTFCEKDGIGGLVKEINHS- 237

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KP +   I   G   +I + +A ++   Y+E+++ + NNI    GGTH+ GL+S +TR I
Sbjct: 238 KPTLTDVISFSGVSKDIEVQIAFQYVQEYNEHLISYCNNIITPHGGTHIVGLKSGITRLI 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y ++    K    ++ G   R G  +V+SI+  +P++  QTKEKL S++ +  VE  +
Sbjct: 298 NGYAKELGLLKTKDNTIDGAHIRTGIVAVVSIRHSNPQYEGQTKEKLGSTDAKGAVEEVI 357

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +  S + + H  E K I++  +  S +R+   ++RD + +K    + +     +  S+ 
Sbjct: 358 KNEGSKFFDLHVEEVKRIIENAMRVSKIRETEEKSRDNSLQKKDAQLQTNGKLASASSKT 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
             KK E++LVEGDSAGG+AKQ R R+ QAILP +GKI+NVE+AR DK+LS++EI ++I A
Sbjct: 418 PVKKKEIYLVEGDSAGGTAKQARDRKTQAILPAKGKIINVEKARIDKVLSNEEIQSIIVA 477

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G G+  FDI+K+ Y +++IMTDADVDGAHIRTLLLTFF+R M  LI  G+++I  PP
Sbjct: 478 IGGGHGKA-FDISKVNYGRVVIMTDADVDGAHIRTLLLTFFYRYMRPLIEEGYVWIAVPP 536

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I   +     K E S+  Y   + +S +  L    K +     L   +      D  
Sbjct: 537 LYQIVHEEQKGRKKVETSMYAYSDEELVSVKNLLGNKIKRIQRYKGLGE-MSATQLWDTT 595

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
           +        +  IE A  +                 K+A R  FI  ++ K
Sbjct: 596 LNPETRKQIQVRIEDAKEADAVTELLM-------GDKVAPRREFIISEAHK 639



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 53/68 (77%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A+QLW+TTLNP+TR  ++V+I DA +AD +   LMGD+V PRREFI   
Sbjct: 577 IQRYKGLGEMSATQLWDTTLNPETRKQIQVRIEDAKEADAVTELLMGDKVAPRREFIISE 636

Query: 796 SLPSALDI 803
           +  + +DI
Sbjct: 637 AHKANIDI 644


>gi|293191018|ref|ZP_06609062.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309]
 gi|292820705|gb|EFF79671.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309]
          Length = 674

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 277/649 (42%), Positives = 382/649 (58%), Gaps = 36/649 (5%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+DN +N     SY A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+
Sbjct: 1   MADNEKNAEGEQSYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L GYAD I VT+  DG   V DNGRGIP D H  E     EV+MT LHAGGKF    Y V
Sbjct: 60  LAGYADHIEVTIQEDGGIKVVDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAV 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTF 175
           SGGLHGVG+SVVNALS+ +   I+R+G ++ MSF N G    PL   G   ++TGT   F
Sbjct: 120 SGGLHGVGISVVNALSTRVNTEIRRQGYVWRMSFANGGTPITPLKR-GEETDETGTTQVF 178

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------S 215
            P  +IF   +F+++TL+ R ++++FLN  ++I+L D+R                    +
Sbjct: 179 YPDPEIFETVEFDFETLRQRFQQMAFLNKGLRITLTDEREFATDEGDEIAGGEEALDKKT 238

Query: 216 PEPREITMFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHE 271
              R ++  Y+ G+  +V Y    +  + +    I  +       +S+++AM+W   Y  
Sbjct: 239 KGHRTVSYCYEHGLRDYVEYLDSAKKSETINNEIIDFEAENDEGTMSVEIAMQWTTAYSS 298

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +V  F N I   +GG H  G R+ALT  +  Y  +    +    ++ GDD REG T+V+S
Sbjct: 299 SVHTFANTINTTEGGMHEEGFRTALTSLVNRYGREKGIIRDKDDNLTGDDVREGLTAVIS 358

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           IK+ +P+F  QTK KL ++E R+ V   V   L+ WL+ HP +AK I+ K   A   R A
Sbjct: 359 IKLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWLDAHPADAKAIINKGQAAQAARVA 418

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR+ TRRKGVL+ AS+PGKL DCS R P + E+F+VEGDSAGGSA  GR  E QAIL
Sbjct: 419 ARKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAIL 478

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           P+RGKILNVE+AR D+ LSS  I +LITA GTGIG+D FDI+KLRY KI+IM DADVDG 
Sbjct: 479 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDISKLRYGKIVIMADADVDGQ 537

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSE 570
           HI TLLLT  FR M  LI  G  +I  PPLY I    +   +   ++  ++     +   
Sbjct: 538 HIATLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDEL---LAAGS 594

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
                   +G I +      ++D    +  +        +  +++A  +
Sbjct: 595 AANRRLPKEGGIQRYKGLGEMNDHELWETTMDPASRILKQVTLDEAADA 643



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LWETT++P +R L +V + +A+ AD+ F+ LMGD+V+ RR FIQ N
Sbjct: 606 IQRYKGLGEMNDHELWETTMDPASRILKQVTLDEAADADETFTILMGDDVDRRRTFIQRN 665

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 666 ATDVRFLDI 674


>gi|269954816|ref|YP_003324605.1| DNA gyrase subunit B [Xylanimonas cellulosilytica DSM 15894]
 gi|269303497|gb|ACZ29047.1| DNA gyrase, B subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 681

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 267/616 (43%), Positives = 367/616 (59%), Gaps = 41/616 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N  +  YDA +I +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE+L GY
Sbjct: 1   MA-NRNDGGYDAGNITVLEGLEAVRKRPGMYIGST-GERGLHHLVTEVVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD I VTL  DG   V DNGRGIP  +H  EG    EV+MT LHAGGKF    Y VSGGL
Sbjct: 59  ADTIDVTLLADGGVRVVDNGRGIPVAIHPTEGKPTVEVVMTILHAGGKFGGGGYAVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG+SVVNALS  +   I R+G  + M F + G     L        +TGT  TF    
Sbjct: 119 HGVGISVVNALSRRVVSEIARDGYHWRMEFADGGHPVGELQRL-EPTEETGTTQTFWADP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----------------- 222
           +IF   +F+++TL+ R ++++FLN  + I+L D+R+                        
Sbjct: 178 EIFETTEFDFETLRARFQQMAFLNKGLTITLTDERAGHADLEDEVVGEVPVPDADGVVVV 237

Query: 223 ---------------MFYKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAM 263
                            Y GG+  +V +L+  K    +    I  +       IS+++AM
Sbjct: 238 DHDDDPSTPPARTVTYRYDGGLTDYVKHLNSSKRVDLIHPEVIDFESEDTERKISLEIAM 297

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +W   Y E+V  + N I   +GGTH  G R+A+T  + SY  +    K+ + ++ GDD R
Sbjct: 298 QWTSAYSESVHTYANTISTTEGGTHEEGFRAAMTNLVNSYAREKGILKEKEDNLTGDDIR 357

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T+V+SIK+ +P+F  QTK KL ++E ++ V+  V + L+ W + HP EAK +++K +
Sbjct: 358 EGLTAVISIKLGEPQFEGQTKTKLGNTEAKTFVQRVVREQLTDWFDSHPNEAKDVIRKAI 417

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            AS  R AAR+AR+ TRRKG+L    +PGKL DC    P++ E+++VEGDSAGGSA +GR
Sbjct: 418 SASQARIAARKAREATRRKGLLSSGGMPGKLKDCQSNRPEECEIYIVEGDSAGGSAVRGR 477

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           +  NQAILP+RGKILNVERAR DK LS+ E+ +LITA GTGIG+D FD +KLRYHK+I+M
Sbjct: 478 NPHNQAILPIRGKILNVERARLDKALSNLEVQSLITAFGTGIGED-FDASKLRYHKVILM 536

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
            DADVDG HI TLLLT  FR M  LI  G +Y+  PPLY +    +       +   D  
Sbjct: 537 ADADVDGQHIATLLLTLLFRYMRPLIEQGHVYLAMPPLYRLKWSNAPHDYVYSDKERDAF 596

Query: 564 INQSLSEEIELFCDSK 579
           I + L+    +  D  
Sbjct: 597 IREGLANGKRMPKDKG 612



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 55/73 (75%), Gaps = 3/73 (4%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG  +QRYKGLGEM+  +LWETT++PD R+L +V + DA+ AD++FS LMG++VE RR F
Sbjct: 611 KG--IQRYKGLGEMDYQELWETTMDPDHRTLRQVTMDDAAAADEIFSMLMGEDVESRRSF 668

Query: 792 IQENSLPSA-LDI 803
           IQ N+     LDI
Sbjct: 669 IQRNAKDVRFLDI 681


>gi|239930170|ref|ZP_04687123.1| DNA gyrase subunit B [Streptomyces ghanaensis ATCC 14672]
          Length = 687

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 286/649 (44%), Positives = 398/649 (61%), Gaps = 24/649 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D+   +SY+A +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L GYAD
Sbjct: 27  DSEATASYNASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGYAD 85

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHG
Sbjct: 86  TIDVTILDDGGIRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHG 145

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ + + +K +G  +   +  G+   PL     A  +TGT VTF    DIF
Sbjct: 146 VGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAK-HEATEETGTSVTFWADPDIF 204

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYK 226
              D++++TL  R +E++FLN  ++I+L D+R                  E + ++  Y+
Sbjct: 205 ETTDYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKYEVKAVSYHYE 264

Query: 227 GGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           GGI  FV Y   R   P+  + I ++      ++S+++AM+WN GY E V  F N I   
Sbjct: 265 GGIVDFVKYLNSRKGDPVHPTVIDLEAEDKDRHLSLEVAMQWNGGYTEGVYSFANIIHTH 324

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           +GGTH  G R+ALT  I  Y       +    ++ GDD REG T+++S+K+ +P+F  QT
Sbjct: 325 EGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGLTAIISVKLSEPQFEGQT 384

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL ++EV++ V+  V + L+ WL+ +P EA  IV+K + A+  R AAR+ARDLTRRKG
Sbjct: 385 KTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIVRKGIAAATARVAARKARDLTRRKG 444

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           +L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+A
Sbjct: 445 LLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKA 504

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R D++L +QEI  +I+A GTG+ +D FDI +LRYHKII+M DADVDG HI TLLLTF FR
Sbjct: 505 RIDRILQNQEIQAMISAFGTGVHED-FDIERLRYHKIILMADADVDGQHINTLLLTFLFR 563

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            M  L+  G +++ +PPLY I  GK        +   D LI         +  DS     
Sbjct: 564 FMRPLVEAGHVFLSRPPLYKIKWGKDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFK 623

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
              L     + L++  + ++       T  + A    +F+    +++  
Sbjct: 624 G--LGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEA 670



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR   K I   S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 601 DALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLF 660

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR+FIQ N+     LDI
Sbjct: 661 SVLMGEDVEARRQFIQRNAKDVRFLDI 687


>gi|260662108|ref|ZP_05863004.1| DNA topoisomerase IV, B subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553491|gb|EEX26383.1| DNA topoisomerase IV, B subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 665

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 265/660 (40%), Positives = 367/660 (55%), Gaps = 30/660 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       YDA SI+ILKGL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L G+
Sbjct: 1   MAQEEYK--YDASSIKILKGLEAVRKRPGMYIGSTD-VHGLHHLVYEIVDNAVDEALSGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119
            D I VT+  D + TV D+GRG+P  +H E G    EVIMT LHAGGKF Q   YK SGG
Sbjct: 58  GDEINVTIEPDNAITVQDHGRGMPVGMH-ESGKPTPEVIMTILHAGGKFGQADGYKSSGG 116

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSS L L I R+   Y+  F + G     L   G     +GT VTF P 
Sbjct: 117 LHGVGASVVNALSSKLTLTIVRDHVCYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS   ++Y TL  RLRE +FL   V+I+L DKR    +E    +  GIE FV YL+ 
Sbjct: 177 PTIFSTTVYDYQTLARRLRESAFLLKGVKITLTDKREGMEQEEVFQFANGIEDFVDYLNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             K  +       G++D + +D+A ++NDGY EN+L F NN+    GGTH  G R A T+
Sbjct: 237 D-KDTLGKVFSFTGTQDGVEVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  K    K+  +++ G D REG T+V+S+++P+   +F  QTK KL + E R +V
Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           ++ V++ L   L E+   A+ ++K       +       R +  + ++      +L GKL
Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                ++  K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D ++ ++E+
Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G G+G   F +    Y KIIIMTDAD DGAHI+ LLLTFF++ M  +I  G +
Sbjct: 476 NTIIYTVGAGVG-TEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRV 534

Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN- 589
           YI  PPLY +     +   + Y    + L   L  +             G ++ + L   
Sbjct: 535 YIAMPPLYRLQKGRGKNTKITYAWTNDELTK-LTKKGSKGTSLQRFKGLGEMNADQLWET 593

Query: 590 ------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                        I+DA   +K I     N  +   E    +  F    DQE +  + +K
Sbjct: 594 TMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQNVHFTISDDQEADALVEAK 653



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  +V    +L   +  +       +     N D ++           +    
Sbjct: 458 VLNTEKAKLDDVMKNEELNTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILL 517

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      I + R+      +  L    G   KIT       L  +   G KG S+Q
Sbjct: 518 LTFFYKYMRPMIEAGRVYIAMPPLYRLQKGRGKNTKITYAWTNDELTKLTKKGSKGTSLQ 577

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA  A+   + LMG++VEPRRE+I +N
Sbjct: 578 RFKGLGEMNADQLWETTMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQN 635


>gi|310642463|ref|YP_003947221.1| DNA topoisomerase iv, b subunit [Paenibacillus polymyxa SC2]
 gi|309247413|gb|ADO56980.1| DNA topoisomerase IV, B subunit [Paenibacillus polymyxa SC2]
          Length = 659

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 259/603 (42%), Positives = 375/603 (62%), Gaps = 24/603 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                S Y AD IQ+L+GL AV+KRP MYIG T   SGLHH+++E++DNA+DE L  +  
Sbjct: 14  TQNGASEYGADDIQVLEGLVAVRKRPGMYIGSTSS-SGLHHLVWEIVDNAVDEHLAKFCS 72

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T++ DGS TVSDNGRGIPT +H + GI   +V+ T LHAGGKF    YK SGGLHG
Sbjct: 73  RIDITMHKDGSVTVSDNGRGIPTGMH-KMGIPTPQVVFTILHAGGKFGGSGYKKSGGLHG 131

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGTE 172
           VG SV NALS WL++ I R+G I+   F            G     L V G+  N TG++
Sbjct: 132 VGASVTNALSEWLEVEIYRDGKIHRQRFEYWQDKKGVEHVGEPTTGLEVLGNT-NKTGSK 190

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           +TF P   +F     FNYDTL  RL+E++FLNS ++I L D+RS +      FY+GG   
Sbjct: 191 ITFKPDIRVFQSGIHFNYDTLAERLQEIAFLNSGLRIQLKDERSGKS--DEYFYEGGASQ 248

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVS+L+  K  L    I     +++I +++A+++N GY E +  F N+IP + GGTH +G
Sbjct: 249 FVSFLNEGKDVLH-DVIHFNAEKEDIEVEIAIQYNAGYTETIASFVNSIPTRGGGTHETG 307

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++A TR +  Y  K+   K+  +++ G+D REG  +V+S+KM +  F  QTK++L S+ 
Sbjct: 308 FKTAYTRIMNDYARKTAMLKEKDKNLEGNDLREGMMAVISVKMAEVEFVGQTKDQLGSAS 367

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASL 410
            RS V++ V++ +  +LEE+P  A+ +++K + AS  R+AAR+ARD  R  K   + ++L
Sbjct: 368 ARSTVDAIVSEQMQRFLEENPQIAQTLIRKAVQASKAREAARKARDEMRSGKKRSESSNL 427

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
            GKL+    +D  ++ELF+VEGDSAGGSAKQGR  + QAILPL+GK +N E+++   ++ 
Sbjct: 428 NGKLSPAQSKDFTRNELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEKSKLADIMK 487

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           + E   +  A+G G+G   F +    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI 
Sbjct: 488 NDEYRAITAAIGAGVG-TEFTLEDSNYSKIIIMTDADTDGAHIQVLLLTFFYRYMKELID 546

Query: 531 NGFLYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            G ++I +PPLY ITR     ++++Y   +E L++YL     + E        G ++ + 
Sbjct: 547 AGRIFIAQPPLYKITRKSGKLETVRYAWTDEQLDNYLKEFGRNFE-LQRYKGLGEMNPDQ 605

Query: 587 LRN 589
           L  
Sbjct: 606 LWE 608



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 107/293 (36%), Gaps = 6/293 (2%)

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D  G+      +     +           I +  +    +    +     ++ ++    +
Sbjct: 361 DQLGSASARSTVDAIVSEQMQRFLEENPQIAQTLIRKAVQASKAREA-ARKARDEMRSGK 419

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
             SE   L        SK+  RN +                  K      +     N E 
Sbjct: 420 KRSESSNLNGKLSPAQSKDFTRNELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEK 479

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
            +  ++    +       I       +    +N   ++           +      F + 
Sbjct: 480 SKLADIMKNDEYRAITAAIGAGVGTEFTLEDSNYSKIIIMTDADTDGAHIQVLLLTFFYR 539

Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISMQRYKGL 742
              + I + RI      +  +     K++          L + +   GR    +QRYKGL
Sbjct: 540 YMKELIDAGRIFIAQPPLYKITRKSGKLETVRYAWTDEQLDNYLKEFGR-NFELQRYKGL 598

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GEMN  QLWETT+NP++R+LLRV+I DA++A+   S LMGD+V+PR+ +I EN
Sbjct: 599 GEMNPDQLWETTMNPESRTLLRVQIEDAAKAERRVSTLMGDKVDPRKRWIVEN 651


>gi|296127875|ref|YP_003635125.1| DNA gyrase, B subunit [Cellulomonas flavigena DSM 20109]
 gi|296019690|gb|ADG72926.1| DNA gyrase, B subunit [Cellulomonas flavigena DSM 20109]
          Length = 698

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 272/640 (42%), Positives = 384/640 (60%), Gaps = 31/640 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+YDA +I +L+GL+AV+KRP MYIG T G  GLHH++YEV+DN++DE+L GY D I VT
Sbjct: 37  STYDASNITVLEGLEAVRKRPGMYIGST-GARGLHHLVYEVVDNSVDEALAGYCDTIEVT 95

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DG   V+DNGRGIP  +H  EG    EV+MT LHAGGKF    Y VSGGLHGVG+SV
Sbjct: 96  LLADGGVRVTDNGRGIPVAIHPTEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISV 155

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALSS ++  +KR+G  +  SF + G     L   G A ++TGT  TF     IF   +
Sbjct: 156 VNALSSRVETVVKRDGYAWSQSFADGGKPVGELRQ-GPATDETGTSQTFWADGTIFETTE 214

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------MFYKG 227
           ++++TL+ R ++ +FLN  ++ISL D+R                             Y G
Sbjct: 215 YDFETLRARFQQYAFLNKGLKISLTDERPQHTGTEDEVTGETPSEAPATTARNVTYKYDG 274

Query: 228 GIEAFVSYLD--RHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           G+  +V +L+  +    +    I  +       IS+++A++W   Y E+V  F N I   
Sbjct: 275 GLVDYVKHLNSAKKVDHVHPDVIDFEAEDTTRRISVEIALQWTTAYSESVHTFANTISTT 334

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           +GGTH  G R+A+T  +  Y       K+   ++ GDD REG T+V+S+K+ +P+F  QT
Sbjct: 335 EGGTHEEGFRAAMTSLMNRYARDKGILKEKDENLTGDDIREGLTAVISVKLGEPQFEGQT 394

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL ++E +  V++ VND L AWL+ HP EAK +++K + A+  R AAR+AR+ TRRKG
Sbjct: 395 KTKLGNTEAKRFVQTVVNDQLGAWLDAHPSEAKDVIRKSIQAAAARMAARKAREATRRKG 454

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           +L+  S+PGKL DC   +P + E+F+VEGDSAGGSA +GR+   QAI+P+RGKILNVERA
Sbjct: 455 LLESNSMPGKLRDCQSNNPAECEVFIVEGDSAGGSAVRGRNPRTQAIMPIRGKILNVERA 514

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R DK L +QE+  LITA GTGIG+D FD++KLRYHKI++M DADVDG HIRTLLLT  FR
Sbjct: 515 RLDKALGNQEVQALITAFGTGIGED-FDVSKLRYHKIVLMADADVDGQHIRTLLLTLLFR 573

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
            MP LI  GF+Y+ +PPLY I    +   YV  +   +  + +   +       +     
Sbjct: 574 YMPQLITGGFVYMAQPPLYRIKWSNAPHDYVYSDRERDAVITDGRANGRRLPKENGVQRY 633

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                   +D     +  +   +    +  +++A  +   
Sbjct: 634 KG---LGEMDYTELWETTMSPEHRTLLQVTLDEAAAADEI 670



 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LWETT++P+ R+LL+V + +A+ AD++FS LMG++VE RR FIQ N
Sbjct: 630 VQRYKGLGEMDYTELWETTMSPEHRTLLQVTLDEAAAADEIFSVLMGEDVEARRGFIQRN 689

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 690 AKDVRFLDI 698


>gi|42561045|ref|NP_975496.1| DNA topoisomerase IV subunit B [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492542|emb|CAE77138.1| DNA TOPOISOMERASE IV SUBUNIT B [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301321176|gb|ADK69819.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 643

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 257/598 (42%), Positives = 364/598 (60%), Gaps = 17/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N +   YD  +IQ+L+GLDAV+KRP MYIG TD   GLHH+++E++DNAIDE+L GY
Sbjct: 1   MAENGK---YDESAIQVLEGLDAVRKRPGMYIGSTDN-RGLHHLVWEIVDNAIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V L  D S T+SDNGRGIPT +H + G S  EVI + LHAGGKF+  +YK SGGL
Sbjct: 57  CTQIDVILEKDNSITISDNGRGIPTGMH-KTGKSTPEVIFSILHAGGKFDSTAYKSSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SV NALS   K  I R+  I+E+ F N G L+ PL    +    TGT + FLP  
Sbjct: 116 HGVGSSVTNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANT-YKTGTTINFLPDD 174

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   FN+  +  RL+E + LNS ++I+L D  S    E    Y  G+  F+  L   
Sbjct: 175 SIFSNTKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQFQY--GLVEFIKELVDD 232

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KK  +   I I     NI  ++A+++ +  +E +L F NN+   DGGTHL G +S L R 
Sbjct: 233 KKV-ITDIITINNESKNIIAEIALQYTEDDNEIILGFANNVKTSDGGTHLVGFKSGLIRA 291

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           I  Y ++    K DK  +  +D REG  +++++K+P+    +  QTK KL +S+ ++VVE
Sbjct: 292 INDYAKEQKILK-DKAKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVE 350

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415
             V + +S WL E+ + A  I++   +A   R AA++AR   +  +        + GKL 
Sbjct: 351 QIVYEFMSYWLIENKVLANKIIENAFNAQKARIAAKQARQAIKSVKGKKNINKLMLGKLT 410

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +  + +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK++N E+A+   +L ++EI 
Sbjct: 411 PAQGKKREINELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVINSEKAKLVDLLKNEEIQ 470

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           ++I A+G G+G+D FDI+ + Y KIIIMTDAD DGAHI+TLLLTFF+R M  LI +  +Y
Sbjct: 471 SIINAIGAGVGKD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIVHKKVY 529

Query: 536 IIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           I  PPLY IT       Y+ DEE L ++    +   EI+ +     + +    +  +D
Sbjct: 530 IALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587



 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 78/175 (44%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  + +++    ++ + +N I     K +  S  N   ++           +    
Sbjct: 452 VINSEKAKLVDLLKNEEIQSIINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLL 511

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +      I   ++      +  +  N            L+       K   +QRYK
Sbjct: 512 LTFFYRHMKDLIVHKKVYIALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYK 571

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GLGEMNA QLW+TT++P  R +++V ITD   A+ +F  LMGD+VE R+ +IQEN
Sbjct: 572 GLGEMNADQLWQTTMDPKNRKIIQVTITDGLLAERMFKTLMGDDVEKRKLWIQEN 626


>gi|19909651|dbj|BAB87021.1| DNA gyrase subunit B [Vibrio campbellii]
          Length = 467

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 278/469 (59%), Positives = 367/469 (78%), Gaps = 3/469 (0%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DN+IDE+L G+   I VT++ D S +V+D+GRGIPT++H EE +S
Sbjct: 1   TDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVTDDGRGIPTEMHPEENVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G 
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGE 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL V G     TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R
Sbjct: 121 PQAPLAVIGDTE-KTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDER 179

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENV 273
             +       ++GGI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+
Sbjct: 180 EADK-SDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENI 238

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K
Sbjct: 239 YCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVK 298

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR
Sbjct: 299 VPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAAR 358

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 359 KAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 418

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 419 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 467


>gi|28492972|ref|NP_787133.1| DNA gyrase subunit B [Tropheryma whipplei str. Twist]
 gi|28572180|ref|NP_788960.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27]
 gi|28410311|emb|CAD66697.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27]
 gi|28476012|gb|AAO44102.1| DNA gyrase subunit B [Tropheryma whipplei str. Twist]
          Length = 649

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 262/587 (44%), Positives = 367/587 (62%), Gaps = 9/587 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +    +Y AD IQ+L+GL+AV++RP MYIG T G  GLHH++YE++DN++DE+L GY   
Sbjct: 3   DTPEPAYGADQIQVLEGLEAVRRRPGMYIGST-GSRGLHHLVYELVDNSVDEALAGYCTK 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  DG   V+DNGRGIP D+H +EG+S  +V++T LHAGGKF    Y VSGGLHGV
Sbjct: 62  INVAILADGGVRVTDNGRGIPVDIHPKEGVSTVQVVLTTLHAGGKFGSGGYSVSGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS  L + + R+G ++  ++  G     L       N TGT +TF P  DIF 
Sbjct: 122 GSSVVNALSKRLYVEVSRQGFVFRQNYEGGNPTAALERCEET-NATGTAITFWPDDDIFE 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP-REITMFYKGGIEAFVSYLD--RHK 240
              F Y+ L+ RL++++FLNS + +S+ D+R   P    T  Y+ G+  +V Y +  R  
Sbjct: 181 TVCFEYEVLRSRLQQMAFLNSGLTVSITDERVDSPTNNETYCYQNGLFDYVMYQNRIRKH 240

Query: 241 KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +PL +  I  Q       +S+++AMRW     EN+  F N I   +GGTH  G R+ALT 
Sbjct: 241 EPLHEEIIHFQAENKDRLMSLEVAMRWTSSSTENIYTFANTINTHEGGTHEEGFRAALTS 300

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y  +    K+   S+ G+D REG T+++S+K+ +P+F  QTK KL ++E+R  V  
Sbjct: 301 LVNRYAREKGFLKEKDESLQGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEMRGYVHH 360

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            VN  L  W + HP +AK+I+ K L A+  R AA+RAR+ +R++G+ +  S+PGKL +C 
Sbjct: 361 EVNSYLWDWFDSHPAQAKVIISKALLAAEARLAAKRAREASRKRGLFESVSMPGKLKECQ 420

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SELF+VEGDSAGGSA QGR    QA+LPLRGKILNVE+AR DK +++ EI  ++
Sbjct: 421 AKDPAVSELFIVEGDSAGGSAIQGRDPLTQAVLPLRGKILNVEKARLDKAIANSEIQAML 480

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA G+GI  + FD +K RYHKII+M+DADVDG HI TLLLT  FR M  LI +G++Y+  
Sbjct: 481 TAFGSGI-AEDFDESKARYHKIILMSDADVDGQHITTLLLTLLFRYMRPLIESGYVYLAH 539

Query: 539 PPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           PPLY I    S   YV  +   +  L    LS +     ++      
Sbjct: 540 PPLYRIKWSNSEHDYVFSDRERDKKLAEGKLSGKKIPKENAIQRYKG 586



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LW+TT+NP TR+L ++ + D + AD++FS LMG++V+ RR+FIQ N
Sbjct: 581 IQRYKGLGEMNYRELWDTTMNPATRTLRQITVDDVTLADEIFSVLMGEDVDSRRKFIQHN 640

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 641 ARDVRFLDI 649


>gi|134096626|ref|YP_001102287.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338]
 gi|291005720|ref|ZP_06563693.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338]
 gi|133909249|emb|CAL99361.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338]
          Length = 630

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 252/570 (44%), Positives = 354/570 (62%), Gaps = 18/570 (3%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T GE GLHH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H 
Sbjct: 1   MYIGST-GERGLHHLVQEVVDNSVDEAMAGYATRVEVTLLADGGVRVVDDGRGIPVDMHP 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
            E     EV++T LHAGGKF   SY VSGGLHGVGVSVVNALS+ L+  I   G+++   
Sbjct: 60  VEKKPTLEVVLTVLHAGGKFGGDSYAVSGGLHGVGVSVVNALSTALEAEIHLHGHVWRQR 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +    + L   G     TGT +TF     IF    +N +T+  RL+E++FLN  + I 
Sbjct: 120 YEDSKPVHDLQK-GERTTRTGTTITFWADPTIFETTRYNAETISRRLQEMAFLNKGLTIV 178

Query: 210 LIDKRSPEPR--------------EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           L D+R+ E                E T  Y GG+E FV +++  K+P+ +  +    S  
Sbjct: 179 LRDERAAEEHEGGEDASGAAARATERTFHYPGGLEDFVRHINATKEPIHKKVVSFSASGK 238

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY+++V  F N I   +GGTH  G RSALTR + +Y +     K    
Sbjct: 239 GHELEVAMQWNSGYNQSVYTFANTINTHEGGTHEEGFRSALTRVVNAYAKDKKLLKDKDG 298

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           S+ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V++   + L+ W E +P EA
Sbjct: 299 SLTGDDVREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQTNAFEWLTDWFERNPTEA 358

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K IV K + ++  R AARRA++L RRK  +DI  LPGKL DC    P + EL++VEGDSA
Sbjct: 359 KTIVNKAVSSAQARVAARRAKELVRRKSAMDIGGLPGKLKDCQSNQPDECELYIVEGDSA 418

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK+GR    QAILP+RGKI+NVE+AR DK+L + E+ ++ITALGTGI  D FD++KL
Sbjct: 419 GGSAKEGRESRFQAILPIRGKIINVEKARIDKVLKNNEVQSIITALGTGI-HDEFDLSKL 477

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVK 554
           RYHKI++M DADVDG HI+TLL+T  FR M  LI +G +++ +PPLY I   +S  +Y  
Sbjct: 478 RYHKIVLMADADVDGKHIQTLLMTLLFRFMRPLIEHGHVFLARPPLYKIKWPRSEPEYAY 537

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISK 584
            ++  +  L   + + +     D       
Sbjct: 538 SDKERDALLEAGASAGKKLPKEDGIQRYKG 567



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/89 (52%), Positives = 63/89 (70%), Gaps = 8/89 (8%)

Query: 721 SLLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +LL+   S G+K     G  +QRYKGLGEMNA +LWETT++P TR L++V + DA+ AD+
Sbjct: 544 ALLEAGASAGKKLPKEDG--IQRYKGLGEMNADELWETTMDPATRLLMQVTLDDAATADE 601

Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           LFS LMG++VE RR FI  N+  +  LDI
Sbjct: 602 LFSVLMGEDVEARRSFITRNAKDAGLLDI 630


>gi|320009755|gb|ADW04605.1| DNA gyrase, B subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 689

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 281/661 (42%), Positives = 386/661 (58%), Gaps = 25/661 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD I V
Sbjct: 30  TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADTIDV 88

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 89  TIFADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 148

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + +K +G  +   +  G+   PL     A  +TGT VTF    D+F   D
Sbjct: 149 VVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAR-HEATEETGTSVTFWADGDVFETTD 207

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-------------------SPEPREITMFYKG 227
           ++++TL  R +E++FLN  + + L D+R                       R +T  Y+ 
Sbjct: 208 YSFETLSRRFQEMAFLNKGLTLKLTDEREEAKATAGADSAEVVDVPDEESTRTVTYHYEN 267

Query: 228 GIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           GI  FV Y   R  + + QS I I+    +  +S ++AM+WN  Y E V  F N I   +
Sbjct: 268 GIVDFVKYLNSRKGELIHQSVIDIEAEDKDRLLSAEIAMQWNTQYTEGVYSFANAIHTHE 327

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK
Sbjct: 328 GGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVREGLTAIISVKLGEPQFEGQTK 387

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E ++ V+  V++ L+ W + +P EA  I++K + AS  R AAR+ARDLTRRKG+
Sbjct: 388 TKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRRKGL 447

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RGKILNVE+AR
Sbjct: 448 LESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKAR 507

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR 
Sbjct: 508 IDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRF 566

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           M  L+  G +Y+ +PPLY I  G+        +   D L+         +  DS      
Sbjct: 567 MRPLVEQGNVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIKEDSIQRFKG 626

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
               N  +  +    +              QA          D E   S   + A  + F
Sbjct: 627 LGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRF 686

Query: 645 I 645
           +
Sbjct: 687 L 687



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D + ++G+      K  S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 603 DALVALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLF 662

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLDI 689


>gi|297162918|gb|ADI12630.1| DNA gyrase subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 677

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 274/642 (42%), Positives = 391/642 (60%), Gaps = 22/642 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SYDA++I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD I VT
Sbjct: 24  ASYDANAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADRIDVT 82

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DG   V DNGRGIP  +H  E   A EV++T LHAGGKF    Y VSGGLHGVG+SV
Sbjct: 83  VLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGLSV 142

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS+ L   I  +G  +   + +G    PL     A   TGT +TF    DIF   ++
Sbjct: 143 VNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLAR-HEATPRTGTSLTFWADGDIFETTEY 201

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRS--------------PEPREITMFYKGGIEAFV 233
           +++TL  R +E++FLN  + ++L D+R               P  + ++  Y GGI  FV
Sbjct: 202 SFETLARRFQEMAFLNRGLTLTLTDERPSAHATAAADEADSDPAAKTVSYRYDGGITDFV 261

Query: 234 SY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +Y   R  +P+  S I I        +S+++A++WN  Y ++V  + N I   +GGTH  
Sbjct: 262 AYLNARKGEPVHPSVITIAAEDTERLLSVEVALQWNGQYTDSVYSYANAIHTHEGGTHEE 321

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +  Y  +    ++   ++ G+D REG T+++S+K+ +P+F  QTK KL ++
Sbjct: 322 GFRTALTTVVNRYAREKKLLREKDANLSGEDIREGLTAIISVKLGEPQFEGQTKTKLGNT 381

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E R+ V+  V++ L+ W + +P EA  +V+K + A+  R AAR+ARDLTRRKG+L+ A+L
Sbjct: 382 EARTFVQKVVHEHLTGWFDRNPNEAADVVRKAIQAATARVAARKARDLTRRKGLLETAAL 441

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DC   DP  SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L 
Sbjct: 442 PGKLSDCQSNDPAMSEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDKILH 501

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           +QEI  +I+A GTG+ +D FDI +LRYHKII+M DADVDG HI TLLLTF FR M  LI 
Sbjct: 502 NQEIQAIISAFGTGVHED-FDIARLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLIE 560

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G +Y+ +PPLY I   +        +   + L+ +   +      DS        L   
Sbjct: 561 EGHVYLSRPPLYKIKWSRDHVEYAYSDRERNMLLERGRQDGRRSKDDSIQRFKG--LGEM 618

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
             + L++  +  D       T  + AV   +F+    +++  
Sbjct: 619 NAEELRVTTMDPDHRVLGQVTLDDAAVADDLFSVLMGEDVEA 660



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 3/85 (3%)

Query: 722 LLDTIFSIGRKGI--SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           LL+     GR+    S+QR+KGLGEMNA +L  TT++PD R L +V + DA+ ADDLFS 
Sbjct: 593 LLERGRQDGRRSKDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAVADDLFSV 652

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
           LMG++VE RR FIQ N+     LDI
Sbjct: 653 LMGEDVEARRHFIQRNAKDVRFLDI 677


>gi|291438512|ref|ZP_06577902.1| DNA topoisomerase chain B [Streptomyces ghanaensis ATCC 14672]
 gi|291341407|gb|EFE68363.1| DNA topoisomerase chain B [Streptomyces ghanaensis ATCC 14672]
          Length = 679

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 286/649 (44%), Positives = 398/649 (61%), Gaps = 24/649 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D+   +SY+A +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L GYAD
Sbjct: 19  DSEATASYNASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGYAD 77

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHG
Sbjct: 78  TIDVTILDDGGIRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHG 137

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ + + +K +G  +   +  G+   PL     A  +TGT VTF    DIF
Sbjct: 138 VGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAK-HEATEETGTSVTFWADPDIF 196

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYK 226
              D++++TL  R +E++FLN  ++I+L D+R                  E + ++  Y+
Sbjct: 197 ETTDYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKYEVKAVSYHYE 256

Query: 227 GGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           GGI  FV Y   R   P+  + I ++      ++S+++AM+WN GY E V  F N I   
Sbjct: 257 GGIVDFVKYLNSRKGDPVHPTVIDLEAEDKDRHLSLEVAMQWNGGYTEGVYSFANIIHTH 316

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           +GGTH  G R+ALT  I  Y       +    ++ GDD REG T+++S+K+ +P+F  QT
Sbjct: 317 EGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGLTAIISVKLSEPQFEGQT 376

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL ++EV++ V+  V + L+ WL+ +P EA  IV+K + A+  R AAR+ARDLTRRKG
Sbjct: 377 KTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIVRKGIAAATARVAARKARDLTRRKG 436

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           +L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+A
Sbjct: 437 LLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKA 496

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R D++L +QEI  +I+A GTG+ +D FDI +LRYHKII+M DADVDG HI TLLLTF FR
Sbjct: 497 RIDRILQNQEIQAMISAFGTGVHED-FDIERLRYHKIILMADADVDGQHINTLLLTFLFR 555

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            M  L+  G +++ +PPLY I  GK        +   D LI         +  DS     
Sbjct: 556 FMRPLVEAGHVFLSRPPLYKIKWGKDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFK 615

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
              L     + L++  + ++       T  + A    +F+    +++  
Sbjct: 616 G--LGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEA 662



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR   K I   S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 593 DALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLF 652

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR+FIQ N+     LDI
Sbjct: 653 SVLMGEDVEARRQFIQRNAKDVRFLDI 679


>gi|19909763|dbj|BAB87077.1| DNA gyrase subunit B [Rhodomicrobium vannielii]
          Length = 469

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 311/469 (66%), Positives = 382/469 (81%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L GYAD ++VTLN DGS TV DNGRGIPT++H +EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALGGYADYVSVTLNADGSVTVEDNGRGIPTEIHPQEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS+ L+L I R G+ + M+F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSTRLELTIWRGGHEHFMAFADG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +   PL + G+A +  GT VTF+PS+  F++ DF+Y TL+ RLREL+FLNS V I L D 
Sbjct: 121 VPVEPLKIVGAAPDRRGTRVTFMPSAATFTMVDFDYATLEFRLRELAFLNSGVYIRLTDL 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  EP +    Y+GG++AFV YLDR + PL   P+ ++  RD ++++ A+ WNDGYHENV
Sbjct: 181 RGVEPVKSEFKYEGGLKAFVEYLDRARTPLFPVPVFVRSERDGVAVEAALWWNDGYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R+ALTR I +Y   +  +KK+K  + GDD REG T VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRAALTRTINTYAASTGVAKKEKVQLTGDDAREGLTCVLSVK 300

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + DP+FSSQTK+KLVSSEVR  VES + + L  W EEHP+E K+I+ KV +A+  R+AAR
Sbjct: 301 VADPKFSSQTKDKLVSSEVRPAVESTMTETLGTWFEEHPVEGKLILLKVAEAAAAREAAR 360

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKGVLD+A+LPGKLADC ERDP KSE+FLVEGDSAGGSAKQGR R NQA+LPL
Sbjct: 361 KARELTRRKGVLDVANLPGKLADCQERDPSKSEVFLVEGDSAGGSAKQGRDRSNQAVLPL 420

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           RGKILNVERARFDKMLSSQEIGTLITALGTGIG+D FD++KLRYH+III
Sbjct: 421 RGKILNVERARFDKMLSSQEIGTLITALGTGIGRDDFDLSKLRYHRIII 469


>gi|313884999|ref|ZP_07818751.1| DNA topoisomerase IV, B subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619690|gb|EFR31127.1| DNA topoisomerase IV, B subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 691

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 253/665 (38%), Positives = 382/665 (57%), Gaps = 18/665 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N  N++YD  SIQIL+GLDAV+KRP MYIG TD   GLHH++YE++DN++DE+L GY D 
Sbjct: 3   NKTNANYDDQSIQILEGLDAVRKRPGMYIGSTD-HRGLHHLVYEIVDNSVDEALSGYCDA 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L  DGS  V+DNGRG+P  +H   G+   +VI T LHAGGKF Q  YK +GGLHGV
Sbjct: 62  IKVELLKDGSIRVTDNGRGMPVGMHAS-GVPTIQVIFTVLHAGGKFGQGGYKSAGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVT-GSAGNDTGTEVTFLPSSDI 181
           G SVVNALSSWL +++KR+G  YEM+F + G  +           N++GT+V F+P + I
Sbjct: 121 GASVVNALSSWLTVQVKRDGYTYEMNFKDGGHPEGKFKKIPNKQKNESGTQVHFMPDAKI 180

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F      Y+T+  RLRE +FL   + I + D+RS +    T  Y+ G++ F+      +K
Sbjct: 181 FGANSIKYETILERLRESAFLLKGLTIEITDERSDKE--ETFHYEEGLKDFIK-YLNEEK 237

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
                     G+ D+  I+ A ++NDGY E ++ F NN+    GGTH +G ++ LT+   
Sbjct: 238 HTFSDTAYASGTVDDFEIEFAFQYNDGYSETIMSFANNVRTSMGGTHETGFKTGLTKAFN 297

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359
            Y  ++   K+  +++ G D REG  +VLSI++P+   +F  QTKEKL + + RS+V++F
Sbjct: 298 DYGRRTGIIKEKDKNLDGSDIREGIAAVLSIRVPEAYLQFEGQTKEKLGTPKARSLVDNF 357

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR--KGVLDIASLPGKLADC 417
           V + ++ +L E+  +A+ +++K + A   R+AAR+ARD +R   K       + GKL   
Sbjct: 358 VTEAVTLFLNENGPQAQELLRKAVKARNTREAARKARDASRSGAKRSQQERLISGKLTKA 417

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
             +D K +EL+LVEGDSAGGSAK GR+   QAILPLRGK++N E+A    ++ ++EI T+
Sbjct: 418 QSKDAKMNELYLVEGDSAGGSAKLGRNPRYQAILPLRGKVINTEKASITDIMKNEEINTM 477

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I  +G G+G D F+I  + Y K+IIMTDAD DGAHI+ LLLTFF+R M  L+  G +Y+ 
Sbjct: 478 IYTIGAGVGAD-FNIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVYLA 536

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
            PPLY I++G        ++   +Y       +          ++ +      ++     
Sbjct: 537 MPPLYKISKGS------GKKEKIEYAWTNEELKVATQKIGKGYILQRYKGLGEMNADQLW 590

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
           D  +        +  +E A +S                  + + + F  ++ +   + S 
Sbjct: 591 DTTMNPDTRLLIRVTVEDAALSERRLTTLMGAKVEPRRKWIEDNVKFTLDEEDTLLNDSS 650

Query: 658 NNSDI 662
               +
Sbjct: 651 KGPGL 655



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 100/267 (37%), Gaps = 13/267 (4%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +  L    + ++ +    +         +   +E  +        SK+   N +     
Sbjct: 373 AQELLRKAVKARNTREAARKARDASRSGAKRSQQERLISGKLTKAQSKDAKMNELYLVEG 432

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
                      + +      +   V N E     ++    ++   +  I       ++  
Sbjct: 433 DSAGGSAKLGRNPRYQAILPLRGKVINTEKASITDIMKNEEINTMIYTIGAGVGADFNIE 492

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK 715
             N D ++           +      F +      + + ++      +  +    G K K
Sbjct: 493 DINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVYLAMPPLYKISKGSGKKEK 552

Query: 716 ITGPCSLLDTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
           I              +       KG  +QRYKGLGEMNA QLW+TT+NPDTR L+RV + 
Sbjct: 553 IE-----YAWTNEELKVATQKIGKGYILQRYKGLGEMNADQLWDTTMNPDTRLLIRVTVE 607

Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN 795
           DA+ ++   + LMG +VEPRR++I++N
Sbjct: 608 DAALSERRLTTLMGAKVEPRRKWIEDN 634


>gi|311112567|ref|YP_003983789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa
           ATCC 17931]
 gi|310944061|gb|ADP40355.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa
           ATCC 17931]
          Length = 676

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 267/617 (43%), Positives = 369/617 (59%), Gaps = 37/617 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   Y A  I +L+GL+AV+KRP MYIG T  E GLHH++YEV+DN++DE+L GY
Sbjct: 1   MTSE-QPHEYGASDITVLEGLEAVRKRPGMYIGST-TERGLHHLVYEVVDNSVDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VT+  DG   V D+GRGIP D H  E  S  EV+MT LHAGGKF    Y VSGGL
Sbjct: 59  ASHIEVTIQADGGVRVQDDGRGIPVDEHPTEHKSTVEVVMTVLHAGGKFGGGGYAVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG+SVVNALS  +   + R+G  + +SF N GI D PL   G     TGT  TF P  
Sbjct: 119 HGVGISVVNALSKKVITEVHRQGYSWHISFANGGIPDGPLRR-GKVSQKTGTIQTFYPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------ 215
           +IF   +F+++TL+ R ++++FLN  + ISL D+R                         
Sbjct: 178 EIFETVEFDFETLRARFQQMAFLNKGLTISLTDERDQFEGGDEVAEEEDEKDKVLPLNRV 237

Query: 216 ----PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDG 268
                  R +T  Y  G+  +V +     K  + +  I  +      ++++++AM+W   
Sbjct: 238 GANAEGHRTVTYRYDNGLFDYVHFLNAGSKTVINEDIIYFEAEDTVRHMALEVAMQWTGS 297

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  + N I   +GGTH  G R+ALT  +  Y  ++   +    ++ G+D REG T+
Sbjct: 298 YKESVHSYANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTA 357

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+SIK+ +P+F  QTK KL +SE +S  +  +ND ++ W + +P  AK +V++ + A+  
Sbjct: 358 VISIKISEPQFEGQTKTKLGNSEAKSFTQREINDHMADWFDRNPAVAKDVVRRAITAAQA 417

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+ TRRKG+L+ +S+PGKL DC+ +DP  SE++LVEGDSAGGSA QGR   +Q
Sbjct: 418 RMAARKARETTRRKGLLETSSMPGKLKDCASKDPSISEIYLVEGDSAGGSAVQGRDPNSQ 477

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKILNVERAR D+ LS+ EI  +ITA GTGIG D FD+ K RYHKI++M DADV
Sbjct: 478 AILPLRGKILNVERARLDRALSNAEIQAMITAFGTGIG-DDFDLEKARYHKIVLMADADV 536

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQS 567
           DG HI TLLLT  FR M  LI  G++Y+ +PPLY I    +   YV  +   ++ L    
Sbjct: 537 DGQHITTLLLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVFSDAERDEALARGQ 596

Query: 568 LSEEIELFCDSKGVISK 584
              +     +       
Sbjct: 597 AKNQRLPKDNGIQRYKG 613



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LW+TT++P  R+LL+VK+ DA+ AD +FS LMG++VE RR+FIQ+N
Sbjct: 608 IQRYKGLGEMDYTELWDTTMDPQRRTLLQVKMEDAAAADQIFSVLMGEDVEARRDFIQQN 667

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 668 AKDIRFLDI 676


>gi|48478486|ref|YP_024192.1| DNA gyrase subunit B [Picrophilus torridus DSM 9790]
 gi|48431134|gb|AAT43999.1| DNA gyrase subunit B [Picrophilus torridus DSM 9790]
          Length = 646

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 259/635 (40%), Positives = 371/635 (58%), Gaps = 38/635 (5%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A  IQIL+GL AV++ P MYIG+T  E GLHHM+YEV+DN+IDES+ G+   I + 
Sbjct: 2   DEYNASQIQILEGLKAVRQTPGMYIGNTS-EEGLHHMVYEVIDNSIDESMAGFCSNIYII 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V D+GRGIP D+H +      E+++T LH+G KF++  YKV+GGLHGVGV V
Sbjct: 61  IYKDGSISVEDDGRGIPVDMHPKYKRPGLEIVLTELHSGAKFDKNVYKVTGGLHGVGVHV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--------TGSAGN---DTGTEVTFL 176
           VNALS +L+  +K+   +Y   F  G+    +                   + GT + F 
Sbjct: 121 VNALSDYLEAIVKKNDKLYIEKFERGLPVTKMEELDYIMASTIKDVKIKLANHGTIIKFH 180

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   IF V+DF+Y+ +  R R+L+FLN  V I++ D+R+ +         GG+  FV Y+
Sbjct: 181 PDPQIFDVRDFSYEIIAGRCRQLAFLNPQVTITVEDERTSKKETYHF--TGGLSEFVKYI 238

Query: 237 DRHKKPLMQSPIRIQG--------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
             +K P+ + PI                 S++ A  +     + V  F NNI     GTH
Sbjct: 239 SSNKDPVYKDPIYYSTEIEKEVHNEIRKYSLEFAFLYVTDSSKIVESFANNIRTIYDGTH 298

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  + L+R I  Y++        K ++ GDD R+G  + + +K+  P+F  QTKEKL 
Sbjct: 299 VTGFYTGLSRAIIDYIKSKN---LSKLNITGDDTRDGLIAAIHVKLMRPQFEGQTKEKLG 355

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL-DI 407
           +SE++S+V S     L ++ E +P+ A  I K+V+ ++ +R+A+R  ++L +RK  L   
Sbjct: 356 NSEIKSIVASATEMYLKSYFESYPVTADAIAKRVILSAEIREASRSQKELIKRKSALSSG 415

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           +SLPGKLADCS  DP K+EL++VEGDSAGGSAKQ R+RE QAILPLRGKILNVE+A  +K
Sbjct: 416 SSLPGKLADCSSDDPAKTELYIVEGDSAGGSAKQARNREFQAILPLRGKILNVEKAGDNK 475

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L ++EI  LITA+G+GI +++FD  KLRY KIIIMTDADVDGAHIRTLLLTFF+R M  
Sbjct: 476 VLVNEEIKNLITAIGSGI-KENFDEKKLRYDKIIIMTDADVDGAHIRTLLLTFFYRFMRP 534

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G +Y  +PPLY I +G  + YV  ++  +  L    L           G ++   L
Sbjct: 535 LIELGHVYFAEPPLYRIQKGTDINYVYTDDEKDRLLKK--LGNATIQRFKGLGEMNPEQL 592

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                     D  +           IE A+ +   
Sbjct: 593 W---------DTTMNPEKRRIVMVTIEDAMYADEL 618



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 9/187 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   +  V +  ++ N +  I    ++++       D ++      V    +   +
Sbjct: 465 ILNVEKAGDNKVLVNEEIKNLITAIGSGIKENFDEKKLRYDKIIIMTDADVDGAHI--RT 522

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSL-ICNGDKIKITGPCSLLDTIFSIGRK--GISMQ 737
            + +F  ++ R         +       I  G  I         D +    +K    ++Q
Sbjct: 523 LLLTFFYRFMRPLIELGHVYFAEPPLYRIQKGTDINYVYTDDEKDRLL---KKLGNATIQ 579

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           R+KGLGEMN  QLW+TT+NP+ R ++ V I DA  AD+LF+ LMG++VEPRR+FI+EN+ 
Sbjct: 580 RFKGLGEMNPEQLWDTTMNPEKRRIVMVTIEDAMYADELFNILMGEKVEPRRKFIEENAK 639

Query: 798 PS-ALDI 803
               LDI
Sbjct: 640 FVKNLDI 646


>gi|317054739|ref|YP_004103206.1| DNA gyrase subunit B [Ruminococcus albus 7]
 gi|315447008|gb|ADU20572.1| DNA gyrase, B subunit [Ruminococcus albus 7]
          Length = 662

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 271/592 (45%), Positives = 379/592 (64%), Gaps = 11/592 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++++YD + I++L+GL+ V+ RP MYIG T G  GLHH++YE++DNAIDE+L GY   I 
Sbjct: 22  KSNNYDENQIEVLEGLEPVRVRPGMYIGST-GPKGLHHLVYEIVDNAIDEALAGYCTEII 80

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG-LHGVG 124
           V +       V DNGRGIPT +H +EGISAA V+ T LHAGGKF         G LHGVG
Sbjct: 81  VDILPGDVIRVVDNGRGIPTGIHPKEGISAATVVYTVLHAGGKFGGGGGYKVAGGLHGVG 140

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALS +L+L +    N++   F  G    PL + G   + TGTEV F P  +IF  
Sbjct: 141 ASVVNALSEYLELTVYDGKNVHFQRFDRGHYSEPLKIIGET-DKTGTEVKFKPDPEIFQE 199

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLD--RHK 240
              F+Y+ L  RLRE +FLN+ ++I   D + + +P    + Y+GGI  FV ++   R  
Sbjct: 200 TTTFDYEILLKRLREQAFLNAGIKIVFSDLRNAEKPISEVLHYEGGIRQFVEHIHKTRGV 259

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL +  I I G  D++  ++A+++ND Y+E +L F NNI   DGG+H    +SALT+ +
Sbjct: 260 EPLSEDVIYINGVEDDMFAEIALQYNDTYNEIILSFANNIHTPDGGSHEMAFKSALTKIL 319

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +     K +  +++G+DCREG T+++S+K+ +  F  QTK +L + EVR  V+  +
Sbjct: 320 NDYGKAHNLIKDNDDALMGEDCREGLTAIVSVKLTNCEFEGQTKGRLGNPEVRPFVDKML 379

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +LEE+P  AK I  K + A   R+AA+RAR+LTRRK VL+ ASLPGKLADCSER
Sbjct: 380 KEKLRNYLEENPAVAKAIFDKSIQAQKAREAAKRARELTRRKSVLESASLPGKLADCSER 439

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D   +E+++VEGDSAGGSAK+GR R  QAILPL GK+LNVE+AR DK+  ++++  ++TA
Sbjct: 440 DMSMTEIYIVEGDSAGGSAKEGRDRRYQAILPLWGKMLNVEKARIDKVYGNEKLMPVVTA 499

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGT IG D FDI+KLRY K+IIM DADVDG+HIRTLLLTFFFR M  LI    ++I +PP
Sbjct: 500 LGTSIG-DDFDISKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPLIEEEHVFIAQPP 558

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRN 589
           L+ + R K ++Y   +E  + Y+   S   +           G +    L  
Sbjct: 559 LFKVERNKKVRYAFTDEERDKYIDELSDGGKLKVAVQRYKGLGEMDPEQLWE 610



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 63/82 (76%), Gaps = 1/82 (1%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           +D +   G+  +++QRYKGLGEM+  QLWETT++P+ R++++V + DA +AD++F+ LMG
Sbjct: 581 IDELSDGGKLKVAVQRYKGLGEMDPEQLWETTMDPERRTMIKVTMEDAVKADEIFTILMG 640

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+V PR+EFI++N+     LD+
Sbjct: 641 DKVGPRKEFIEKNAEYVKDLDV 662


>gi|255975795|ref|ZP_05426381.1| gram positive topoisomerase IV [Enterococcus faecalis T2]
 gi|255968667|gb|EET99289.1| gram positive topoisomerase IV [Enterococcus faecalis T2]
          Length = 666

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 260/644 (40%), Positives = 372/644 (57%), Gaps = 15/644 (2%)

Query: 21  LDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNG 80
           ++AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY + I VT+  D S  V+D+G
Sbjct: 1   MEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSG 59

Query: 81  RGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK 140
           RG+PT +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SVVNALS WL++ I 
Sbjct: 60  RGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIV 118

Query: 141 REGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           R+G  Y   F + G     L   G      GT VTFLP   IFS  +F+Y+ L  RLRE 
Sbjct: 119 RDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTNFSYEILAERLRES 178

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           +FL   V+I+L D R  E +E    Y+ GI+ FV+YL+  K  L    +   G+++ I +
Sbjct: 179 AFLLKGVKITLTDGRGEELKEEVFHYEEGIKEFVAYLNEEKDTLTP-VVYFSGAKEGIEV 237

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           +LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+    Y  K    K+  +++ G
Sbjct: 238 ELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKDKNLEG 297

Query: 320 DDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            D REG  +VLSI++P+   +F  QTK KL +   R+VV++ V + +  +L+E+   ++ 
Sbjct: 298 SDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENSEMSQS 357

Query: 378 IVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           +++K + A   R+AAR+AR+     +K     + L GKL     R+PKK+EL+LVEGDSA
Sbjct: 358 LIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSA 417

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +G G+G   F I   
Sbjct: 418 GGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSIEDC 476

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
            Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY +++G   + V  
Sbjct: 477 NYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVI- 535

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
                +Y        E+        ++ +      ++     +  +        +  I+ 
Sbjct: 536 -----EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDD 590

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
           A  +         +        +   + F  E+       S  +
Sbjct: 591 AAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 634



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 359 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 418

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 419 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 478

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 479 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 538

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 539 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 598

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 599 TTLMGDKVEPRRKWIEQH 616


>gi|28569044|gb|AAO47225.1|AF205853_1 DNA gyrase subunit B [Streptomyces rishiriensis]
          Length = 677

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 274/643 (42%), Positives = 390/643 (60%), Gaps = 22/643 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYDA++I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD I V
Sbjct: 23  TASYDANAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADRIDV 81

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +H  E   A EV++T LHAGGKF    Y VSGGLHGVG+S
Sbjct: 82  TVLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGLS 141

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L   I  +G+ +   + +G    PL     A + TGT +TF    DIF   +
Sbjct: 142 VVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLAR-HEATSRTGTSLTFWADGDIFETTE 200

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR--------------SPEPREITMFYKGGIEAF 232
           ++++TL  R +E++FLN  + ++L D+R               P  + ++  Y GGI  F
Sbjct: 201 YSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVSYRYDGGITDF 260

Query: 233 VSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           V +   R  +P   S I I        +S ++A++WN  Y ++V  + N I   +GGTH 
Sbjct: 261 VVHLNARKAEPAHPSVITIAAEDTERLLSAEIALQWNGQYTDSVYSYANAIHTHEGGTHE 320

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALT  +  Y  +    +    ++ G+D REG T+++S+K+ +P+F  QTK KL +
Sbjct: 321 EGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVKLGEPQFEGQTKTKLGN 380

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +EVR+ V+  V++ L+ W + +P EA  IV+K + A+  R AAR+ARDLTRRKG+L+ A+
Sbjct: 381 TEVRTFVQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETAA 440

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL+DC   DP  SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L
Sbjct: 441 LPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKVL 500

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            +QEI  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  L+
Sbjct: 501 QNQEIQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLV 559

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G +++ +PPLY I   +        +   + L+ +   +   +  DS        L  
Sbjct: 560 EEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKG--LGE 617

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
              + L++  +  D       T  + A    +F+    +++  
Sbjct: 618 MNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEA 660



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QR+KGLGEMNA +L  TT++PD R L +V + DA+ ADDLFS LMG++VE RR FIQ 
Sbjct: 608 SIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEARRHFIQR 667

Query: 795 NSLPSA-LDI 803
           N+     LDI
Sbjct: 668 NAQDVRFLDI 677


>gi|28569047|gb|AAO47227.1|AF205854_1 DNA gyrase subunit B [Streptomyces caeruleus]
          Length = 677

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 270/598 (45%), Positives = 374/598 (62%), Gaps = 20/598 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            +  +SYDAD+I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD 
Sbjct: 20  QVGTASYDADAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADR 78

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+  DG   V DNGRGIP  +H  E   A EV++T LHAGGKF    Y VSGGLHGV
Sbjct: 79  IDVTVLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYTVSGGLHGV 138

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ L   I  +G+ +   + +G    PL V   A + TGT +TF     IF 
Sbjct: 139 GLSVVNALSARLSAEIWTDGHRWTQDYRDGAPTAPL-VRREATSRTGTSLTFWADGSIFE 197

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE--------------ITMFYKGGI 229
             D++++TL  R +E++FLN  + ++L D+R+                   ++  Y GGI
Sbjct: 198 TTDYSFETLARRFQEMAFLNRGLTLTLTDERASARATAATDEVHPDPAAKTVSYRYDGGI 257

Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
             FV+Y   R  +P+  S + I        +S ++A++WN  Y ++V  + N I   +GG
Sbjct: 258 TDFVAYLNSRKGEPVHPSVVTIAADDTERLLSAEIALQWNGQYTDSVYSYANAIHTHEGG 317

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK K
Sbjct: 318 THEEGFRTALTTVVNRYARDKKLLREKDANLAGEDIREGLTAIISVKLREPQFEGQTKTK 377

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EVR+ V+  V++ L+ W + +P EA  IV+K + A+  R AAR+ARDLTRRKG+L+
Sbjct: 378 LGNTEVRTFVQKVVHEHLTDWFDRNPNEAADIVRKAVQAATARVAARKARDLTRRKGLLE 437

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            ASLPGKL+DC   DP  SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D
Sbjct: 438 TASLPGKLSDCQSNDPAMSEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARID 497

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L +QEI  LI+A GTG+ +D FDI KLRYHK+I+M DADVDG HI TLLLT  FR M 
Sbjct: 498 RILQNQEIQALISAFGTGMHED-FDIAKLRYHKVILMADADVDGQHINTLLLTVLFRFMR 556

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            LI  G +Y+ +PPLY I   +        +   D L+     +   +  DS      
Sbjct: 557 PLIEEGHVYLSRPPLYKIKWSRDHVEYAYSDRERDTLLELGRRDGRRVRDDSIQRFKG 614



 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QR+KGLGEMNA +L  TT++PD R L RV + DA+ ADDLFS LMG++VE RR FIQ 
Sbjct: 608 SIQRFKGLGEMNAEELRVTTMDPDHRVLGRVALDDAAVADDLFSVLMGEDVEARRHFIQR 667

Query: 795 NSLPSA-LDI 803
           N+     LDI
Sbjct: 668 NAKDVRFLDI 677


>gi|327542614|gb|EGF29087.1| DNA gyrase subunit B [Rhodopirellula baltica WH47]
          Length = 637

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 253/644 (39%), Positives = 366/644 (56%), Gaps = 27/644 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  +    Y+A +I  L+GL+ V+KRP MYIG   G +GLHH+I+E++DN++DE++ G+
Sbjct: 1   MS--VAPKEYNAKNITALEGLEPVRKRPGMYIGGV-GSAGLHHLIWEIVDNSVDEAMNGH 57

Query: 61  ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           A  ITVTL+ DG + +VSDNGRGIP D H +   SA E+++T LHAGGKF   +YK SGG
Sbjct: 58  ASEITVTLHKDGETVSVSDNGRGIPVDKHPKTKKSALEMVLTVLHAGGKFEGDNYKTSGG 117

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS  L   +KR+G  Y M+F  G   + L         TGT +TF P  
Sbjct: 118 LHGVGASVVNALSKELVAIVKRDGVQYRMAFSRGQATSKLQKLRGTVRGTGTSITFTPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    FN DT++ RL   SFL+  V+++ ID+ +      T  ++ GI  ++  + + 
Sbjct: 178 TIFPRTTFNGDTIKQRLETASFLHRGVKVTYIDEVAKTR--DTFLHENGIVDYLGKVIKE 235

Query: 240 KKPL-MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           ++   +          D   +++ ++W +   E+V  + N IP   GGTH +G R  + +
Sbjct: 236 REARTIHEAPFTYRVDDEDRVEVTLQWTESTDEHVRSYVNGIPTGSGGTHENGFRGGVVK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + ++V+           +  +D REG  +++SI + +P+F  QTK++L + E   +VES
Sbjct: 296 AVRNHVDTH-SLTPRGVKITHEDIREGLIAIVSIFVAEPQFQGQTKDRLNNPEAHGLVES 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V   +  WL  +P  A  ++ +++ A+  R A+R A +   RKG      LPGKL+DC 
Sbjct: 355 GVRSAMEQWLNNNPSVADAVIARIVAAARARAASRAASEAVSRKGGSKRTLLPGKLSDCV 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
                KSELF+VEGDSAGGSAKQGR R  QAILPLRGK+LN E A   K+L ++EI  +I
Sbjct: 415 SGGKGKSELFIVEGDSAGGSAKQGRDRNCQAILPLRGKVLNTESATLKKILDNKEIQDMI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            +LG GIG    ++  LRY +II++ DAD DG HI TLLLTFF+R MP+LI +G L+I  
Sbjct: 475 ASLGCGIGPSL-NLANLRYDRIILLADADSDGHHITTLLLTFFYRHMPALIADGRLFIAV 533

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQS--LSEEIELFCDSKGVISK------------ 584
           PPLY I  GK   +  DEE  E  L   +   + EI  F     ++ K            
Sbjct: 534 PPLYRIDIGKETFWAADEEDRERILAEHNGRANPEITRFKGLGEMMPKVLWNTTLDPTKR 593

Query: 585 NDLRNFIDDALKIDKLIKDFYPN----HDKTFIEQAVISGVFNC 624
             L+  IDD L+ D+ I D          +  +E+A  +   + 
Sbjct: 594 TLLKVEIDDHLETDRTISDLMGRDASARFRFIMERAEDASEIDV 637



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 724 DTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           + I +   GR    + R+KGLGEM    LW TTL+P  R+LL+V+I D  + D   S LM
Sbjct: 555 ERILAEHNGRANPEITRFKGLGEMMPKVLWNTTLDPTKRTLLKVEIDDHLETDRTISDLM 614

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           G +   R  FI E +  +  +D+
Sbjct: 615 GRDASARFRFIMERAEDASEIDV 637


>gi|209885135|ref|YP_002288993.1| DNA topoisomerase IV, B subunit [Oligotropha carboxidovorans OM5]
 gi|209873331|gb|ACI93127.1| DNA topoisomerase IV, B subunit [Oligotropha carboxidovorans OM5]
          Length = 689

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/658 (37%), Positives = 358/658 (54%), Gaps = 26/658 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A 
Sbjct: 39  TTSAEGGYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHAS 97

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            I V+L  DG  TV DNGRGIP D H + +  SA E+IM  LHAGGKF+ K Y+ SGGLH
Sbjct: 98  FIEVSLGADGYLTVVDNGRGIPVDPHPKFKNKSALEIIMCTLHAGGKFDSKVYETSGGLH 157

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L + + R   +Y M+F  G     L   G   N  GT V F P ++I
Sbjct: 158 GVGVSVVNALSSELIVEVARNQKLYRMTFERGKPKGKLEELGKVHNRRGTSVRFKPDTEI 217

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVS 234
           F +   F    L    R  ++L   V+I               P E T  + GG++ +++
Sbjct: 218 FGNKAVFKPQRLFQMARSKAYLFGGVEIRWRCAPELLKGLDSVPAEDTFHFPGGLKDYLA 277

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
                   +       +  R+  + + + A+ W       +  +TN +P  DGGTH +G+
Sbjct: 278 AAVHADTLVHPDIFAGKTGRNGAHGACEWAVAWTADADGFMSSYTNTVPTPDGGTHETGM 337

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           RSAL R I  + E++    K   S+  +D   G   +LS+ + +P F  QTK++L ++E 
Sbjct: 338 RSALLRGIRDHAERTGQ-GKKASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEA 396

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE  V D    WL  +P +A  +++ +++ +  R   R  ++   RK  +    LPG
Sbjct: 397 QRIVEQAVKDPFDHWLSGNPTQANKLLEFIIERADERLRRRAEKE-ISRKTAVKKLRLPG 455

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC+    + SELF+VEGDSAGGSAKQ R R+ QAILPLRGKILNV  A  DKM ++ 
Sbjct: 456 KLADCTNTAAEGSELFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVASATRDKMAANA 515

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           ++  LI A+G G G + +    LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI NG
Sbjct: 516 QLSDLIQAIGAGTGAN-YREEDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDNG 574

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            LY+  PPLY +T G    Y +DE   ++ L  +  +         KG+     + N + 
Sbjct: 575 HLYLAVPPLYRLTHGSKTLYARDEAHRDELLKKEFHANAKVEIGRFKGL--GEMMPNQLK 632

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           +                K  + + V++      + + +   + SK   R  FI E++E
Sbjct: 633 ETTMAPA----------KRTLLRVVLATEERDSTAKSVERLMGSKAEARFEFITERAE 680



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 4/180 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++  ++L++ +  I   +  ++         ++      V    +    
Sbjct: 500 ILNVASATRDKMAANAQLSDLIQAIGAGTGANYREEDLRYSRIIIMTDADVDGAHIASLL 559

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F +    K I +  +      +  L      +         + +         + + R
Sbjct: 560 ITFFYRQMPKLIDNGHLYLAVPPLYRLTHGSKTLYARDEAHRDELLKKEFHANAKVEIGR 619

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM  +QL ETT+ P  R+LLRV +   +         RLMG + E R EFI E +
Sbjct: 620 FKGLGEMMPNQLKETTMAPAKRTLLRVVLATEERDSTAKSVERLMGSKAEARFEFITERA 679


>gi|32472532|ref|NP_865526.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1]
 gi|32443768|emb|CAD73210.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1]
          Length = 637

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 253/644 (39%), Positives = 366/644 (56%), Gaps = 27/644 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS  +    Y+A +I  L+GL+ V+KRP MYIG   G +GLHH+I+E++DN++DE++ G+
Sbjct: 1   MS--VAPKEYNAKNITALEGLEPVRKRPGMYIGGV-GSAGLHHLIWEIVDNSVDEAMNGH 57

Query: 61  ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           A  ITVTL+ DG + +VSDNGRGIP D H +   SA E+++T LHAGGKF   +YK SGG
Sbjct: 58  ASEITVTLHKDGETVSVSDNGRGIPVDKHPKTKKSALEMVLTVLHAGGKFEGDNYKTSGG 117

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS  L   +KR+G  Y M+F  G   + L         TGT +TF P  
Sbjct: 118 LHGVGASVVNALSKELVAIVKRDGVQYRMAFSRGQATSKLQKLRGTIRGTGTSITFTPDP 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    FN DT++ RL   SFL+  V+++ ID+ +      T  ++ GI  ++  + + 
Sbjct: 178 TIFPRTTFNGDTIKQRLETASFLHRGVKVTYIDEVAKTR--DTFLHENGIVDYLGKVIKE 235

Query: 240 KKPL-MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           ++   +          D   +++ ++W +   E+V  + N IP   GGTH +G R  + +
Sbjct: 236 REARTIHEAPFTYRVDDEDRVEVTLQWTESTDEHVRSYVNGIPTGSGGTHENGFRGGVVK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + ++V+           +  +D REG  +++SI + +P+F  QTK++L + E   +VES
Sbjct: 296 AVRNHVDTH-SLTPRGVKITHEDIREGLIAIVSIFVAEPQFQGQTKDRLNNPEAHGLVES 354

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V   +  WL  +P  A  ++ +++ A+  R A+R A +   RKG      LPGKL+DC 
Sbjct: 355 GVRSAMEQWLNNNPSVADAVIARIVAAARARAASRAASEAVSRKGGSKRTLLPGKLSDCV 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
                KSELF+VEGDSAGGSAKQGR R  QAILPLRGK+LN E A   K+L ++EI  +I
Sbjct: 415 SGGKGKSELFIVEGDSAGGSAKQGRDRNCQAILPLRGKVLNTESATLKKILDNKEIQDMI 474

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            +LG GIG    ++  LRY +II++ DAD DG HI TLLLTFF+R MP+LI +G L+I  
Sbjct: 475 ASLGCGIGPSL-NLANLRYDRIILLADADSDGHHITTLLLTFFYRHMPALIADGRLFIAV 533

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQS--LSEEIELFCDSKGVISK------------ 584
           PPLY I  GK   +  DEE  E  L   +   + EI  F     ++ K            
Sbjct: 534 PPLYRIDIGKETFWAADEEDRERILAEHNGRANPEITRFKGLGEMMPKVLWNTTLDPTKR 593

Query: 585 NDLRNFIDDALKIDKLIKDFYPN----HDKTFIEQAVISGVFNC 624
             L+  IDD L+ D+ I D          +  +E+A  +   + 
Sbjct: 594 TLLKVEIDDHLETDRTISDLMGRDASARFRFIMERAEDASEIDV 637



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 724 DTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           + I +   GR    + R+KGLGEM    LW TTL+P  R+LL+V+I D  + D   S LM
Sbjct: 555 ERILAEHNGRANPEITRFKGLGEMMPKVLWNTTLDPTKRTLLKVEIDDHLETDRTISDLM 614

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           G +   R  FI E +  +  +D+
Sbjct: 615 GRDASARFRFIMERAEDASEIDV 637


>gi|261338542|ref|ZP_05966426.1| DNA gyrase, B subunit [Bifidobacterium gallicum DSM 20093]
 gi|270276563|gb|EFA22417.1| DNA gyrase, B subunit [Bifidobacterium gallicum DSM 20093]
          Length = 706

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 262/637 (41%), Positives = 369/637 (57%), Gaps = 25/637 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D +    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 41  DTLSPDHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 99

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 100 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 159

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G ++  ++I+     PL           TGT VTF P + 
Sbjct: 160 VGISVVNALSTRVDIEVRRQGYVWTQTYIDQHPTAPLKQGRPMRDDESTGTSVTFWPDAQ 219

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMF 224
           IF    ++++TL+ R ++++FLN  ++ISL D R                 PE + +T  
Sbjct: 220 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDMREPDLAGDEVAGDEAQDKPEHQSVTYQ 279

Query: 225 YKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNNI 280
           Y  GI+ +V +    R   P+    I  +    +I I  ++AM+W   Y E+V  F N I
Sbjct: 280 YLNGIKDYVEFLVKTRKSTPVEPDVIDFEAEDLSIGISAEIAMQWTTAYSESVHTFANTI 339

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y  +    K    ++ GDD REG T+V+S+K+ +P+F 
Sbjct: 340 STTEGGTHEEGFRTALTSLVNKYAREKNILKDKDDNLSGDDVREGLTAVISVKLTNPQFE 399

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE R+ V   +ND LS W + HP E K I++K ++AS  R AA++AR+ TR
Sbjct: 400 GQTKTKLGNSEARAFVIRVMNDKLSDWADAHPNEMKSIIQKAIEASRARLAAKKARENTR 459

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK + + A +P KL DC   DP + ELF+VEGDSAGGSA QGR+   QAILPLRGKILN 
Sbjct: 460 RKSIFESAGMPDKLKDCQSNDPAECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNT 519

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           ERA  D+M+ S  I +LITA+G G G+D F+++K+RYHK+IIM DADVDGAHI TL LT 
Sbjct: 520 ERASLDRMMKSDTIESLITAVGGGYGED-FNLDKVRYHKVIIMADADVDGAHIATLNLTL 578

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSK 579
           FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       +  
Sbjct: 579 FFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGRAAGRQLPKGEGI 638

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
                    ++ +                      QA
Sbjct: 639 QRYKGLGEMSYQELWETTMDPEHRILKQVHIEDALQA 675



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + GR       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA QAD+ 
Sbjct: 619 DRVLAEGRAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDALQADET 678

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+  +
Sbjct: 679 FSMLMGDEVEPRRLFIQRNAHNA 701


>gi|255513419|gb|EET89685.1| DNA topoisomerase (ATP-hydrolyzing) [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 635

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 267/616 (43%), Positives = 395/616 (64%), Gaps = 7/616 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++Y A  I +L G   ++KRP+MYIG T G SG  H++YEV+DN++DE++ GY   I
Sbjct: 1   MDENNYGARDIIVLSGPQGIRKRPAMYIGST-GSSGFIHLLYEVIDNSVDEAMAGYCKNI 59

Query: 65  TVTLNMDGSC---TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            V L  +       V+D+GRGIP D+  +EG  A EVIMT +HAG KF  K+YKVSGGLH
Sbjct: 60  LVKLGRENGVDYAEVTDDGRGIPVDIMPKEGKPAVEVIMTSIHAGAKFENKAYKVSGGLH 119

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG++VVNALSS  ++ +KR   +Y ++F  G+L + L   G+ GN+TGT + F+P ++I
Sbjct: 120 GVGLTVVNALSSHTEVIVKRNSKVYRITFSRGVLTSGLEEIGTCGNETGTTIKFVPDTEI 179

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FSV  F+   L  RLR LSFL+  ++I L+D R     E   + + GI  F++   R  K
Sbjct: 180 FSVDRFDTIQLTERLRYLSFLSPGLKIKLVDLREDSSEETNFYSENGIVDFIN-YLRGGK 238

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
             +  PI I  S ++I +D+ +++ DGY+E +L F N I   +GGTH++G R ALTR IT
Sbjct: 239 SDVSKPIIISKSDNSIKVDIGLQYVDGYNEELLSFVNKIKTPEGGTHVTGFRGALTRAIT 298

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +YV+K+   K    ++ G+D REG  +V+++ M +P F  QTKEKL +  ++SVVE+   
Sbjct: 299 NYVQKNSKKKTS-VNIEGEDTREGLIAVVAVMMQNPEFEGQTKEKLGNVNIKSVVENIAY 357

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             LS + EE+P EA  +++KV  A+  R+AA+RAR+LTR+K + + A LPGKLADC+E D
Sbjct: 358 TALSYYFEENPGEANKVIEKVSRAAEAREAAKRARELTRKKSLFEGAVLPGKLADCTESD 417

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P K+E+F+VEG+SA GS+KQGR R  QAILPLRGKILNVE+A  +K+ ++ E+  ++TA 
Sbjct: 418 PDKAEIFIVEGESAAGSSKQGRDRFYQAILPLRGKILNVEKATDEKIFNNAELHLMVTAF 477

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGI ++ F+I  LRY KII++TDADVDG+HI+TLLLTFF+R +  LI  G++YI +PPL
Sbjct: 478 GTGI-KEGFNIENLRYKKIILLTDADVDGSHIKTLLLTFFYRYLRPLIERGYIYIAQPPL 536

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y ++ G+ ++Y   +  L   +   +    ++ +     +  +      +D   +I K I
Sbjct: 537 YKVSHGREVKYAYSDSELSALMKENNGKGNVQRYKGLGEMNPEQLWETTMDPQKRIIKRI 596

Query: 602 KDFYPNHDKTFIEQAV 617
                          +
Sbjct: 597 SIKDAQIADAIFNILM 612



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 6/186 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   +  +   ++L   +       ++ ++        ++      V    +   +
Sbjct: 453 ILNVEKATDEKIFNNAELHLMVTAFGTGIKEGFNIENLRYKKIILLTDADVDGSHI--KT 510

Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQR 738
            + +F  +Y R    R         L  + +G ++K     S L  +      KG ++QR
Sbjct: 511 LLLTFFYRYLRPLIERGYIYIAQPPLYKVSHGREVKYAYSDSELSALMKENNGKG-NVQR 569

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++P  R + R+ I DA  AD +F+ LMG +V PRR+F++E+S  
Sbjct: 570 YKGLGEMNPEQLWETTMDPQKRIIKRISIKDAQIADAIFNILMGMDVVPRRKFLEEHSTE 629

Query: 799 SA-LDI 803
            + LD+
Sbjct: 630 VSFLDV 635


>gi|171920906|ref|ZP_02932057.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188524343|ref|ZP_03004375.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198273777|ref|ZP_03206311.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554526|ref|YP_002284909.1| DNA topoisomerase IV subunit B [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|171903123|gb|EDT49412.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|195659753|gb|EDX53133.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198249532|gb|EDY74314.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209542027|gb|ACI60256.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 642

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 240/593 (40%), Positives = 365/593 (61%), Gaps = 15/593 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YD  +I+IL+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE +   
Sbjct: 1   MANK-----YDGSAIKILEGLEAVRKRPGMYIGSTSSA-GLHHLVWEIVDNSIDEVMNAN 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I+V L+ D S ++ D+GRGIP D++ +  IS  E ++T LHAGGKF++ +YK +GGL
Sbjct: 55  AKNISVVLHEDNSISILDDGRGIPVDINPQTKISTVETVLTVLHAGGKFDESAYKTAGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS+WL   + R+  IY+  F N G +D PL V G+    TGT + FLP  
Sbjct: 115 HGVGSSVVNALSAWLICEVYRDQKIYQAKFSNGGHIDQPLKVIGTTK-KTGTLIHFLPDP 173

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    FN +T++ RL E +FL   ++IS  DK + +          G+  F+ +++  
Sbjct: 174 LIFKNLFFNPNTIKERLHESTFLIKDLKISFEDKINNKK--YEFINDQGLIDFIKFINET 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KK      I  + + + I +++A +++D  +E ++ F N++   +GG H +  ++ALT  
Sbjct: 232 KKT-FSDVIFFKNTINKIDVEVAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSV 290

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           + +Y  K    K+  +++ GDD REG +SV+S+++P+    +  QTK KL + E    V+
Sbjct: 291 VNNYARKHDLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416
             + D  S WLEE+  +A  +V + + A   + AA+RAR+ T++ K + +   + GKL  
Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAIVARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              +DP  +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR   +L ++EI +
Sbjct: 411 AQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M  LI NG +YI
Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             PPLY +T   + ++    + +E   + +             G ++ + L  
Sbjct: 530 ALPPLYKLTNKNTKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750
           I +  I      +  L     K        + LD +    +K   +QRYKGLGEMNA QL
Sbjct: 522 IENGNIYIALPPLYKLTNKNTKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +ETT++P  R LLRV I D  QA+   + LMG++V  RR++I  N
Sbjct: 581 FETTMDPSKRLLLRVNINDILQAERQINTLMGNDVSIRRQWIDNN 625


>gi|297205989|ref|ZP_06923384.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           jensenii JV-V16]
 gi|297149115|gb|EFH29413.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           jensenii JV-V16]
          Length = 652

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/606 (43%), Positives = 373/606 (61%), Gaps = 13/606 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++ +SYD  SIQIL GL+AV+KRP MYIG TD   G++ ++YE++DN++DE++ GY   I
Sbjct: 7   VKANSYDDSSIQILHGLEAVRKRPGMYIGSTD-IKGINQLVYEIVDNSVDEAMAGYGKEI 65

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S TV D GRG+PT +H E GI   EVI T LHAGGKF +K+YK SGGLHGVG
Sbjct: 66  NVTIHEDNSITVQDFGRGMPTGMH-ESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVG 124

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSS+LK+R+ R G  YE  F + G     L   G   + TGT +TF P   +FS
Sbjct: 125 SSVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGSLKHLGKTNDKTGTTITFKPDERVFS 184

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              + Y+T++ R+RE +FL   V+ +L D+R+P        Y  GI++FVSYL+   K  
Sbjct: 185 TTKYKYETIEERIRESAFLLKGVKFTLKDERTP-NHYEEFLYTDGIKSFVSYLNEG-KDT 242

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                  +G +D+I I+ + ++NDGY EN + F NN+   DGG+H  G RS  TR    Y
Sbjct: 243 FGDVFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDY 302

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
            +K    K+ ++++ G D REG ++VLSIK+P+    F  QTK KL + + RS V++ V 
Sbjct: 303 AKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQARSAVDALVY 362

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420
           + +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R
Sbjct: 363 EKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSGKLTPAQSR 422

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   +  ++EI T+I  
Sbjct: 423 NPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHT 482

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G   F I+   Y KIIIMTDAD DGAHI+ LLLTFF+R M  ++  G +YI  PP
Sbjct: 483 IGAGVG-TEFKIDDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIALPP 541

Query: 541 LYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           LY + +G      ++Y   +E LE           ++ F     + +    +  ++   +
Sbjct: 542 LYRLQKGNGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNPESR 601

Query: 597 IDKLIK 602
           +   +K
Sbjct: 602 MLIRVK 607



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNG---DKIKITGPCSLLDTIFSIGRKGIS 735
            + +F  +Y R    + R+      +  L        KI+       L+       KG S
Sbjct: 517 LLLTFFYRYMRPMVEAGRVYIALPPLYRLQKGNGAKAKIEYAWTDEELERDEKAMGKGYS 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+   + LMGD+VE RR++I++N
Sbjct: 577 LQRFKGLGEMNADQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVEARRKWIEQN 636


>gi|284800187|ref|ZP_06390591.1| DNA gyrase subunit B [Neisseria subflava NJ9703]
 gi|284795800|gb|EFC51147.1| DNA gyrase subunit B [Neisseria subflava NJ9703]
          Length = 565

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 270/568 (47%), Positives = 368/568 (64%), Gaps = 5/568 (0%)

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++R K PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  
Sbjct: 1   MNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQV 60

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR I +Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ SV
Sbjct: 61  MTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGSV 120

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   +N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLA
Sbjct: 121 VNEVINQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLA 180

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ 
Sbjct: 181 DCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVA 240

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++Y
Sbjct: 241 TLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIY 300

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY    GK  +Y+KDE   + +L+  +L +   +       I   +L N     L
Sbjct: 301 IAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGEELANTAKQFL 358

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
               +I+      D+  +   + +   +  + +  + ++A  L+  L+      E+    
Sbjct: 359 LAKTVIEQESRIIDELVLHAMLHASPVDLSTAESADRAVAE-LSGLLDEKEVALERIEGH 417

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             +   I + R   G      LE   + S   +     +  ++        L    ++  
Sbjct: 418 EGHQF-IKITRKLHGNVMVSYLEPKFLNSKAYQTLTQTAAALKGIVGKEAKLYKGDNEYD 476

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I      LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD+
Sbjct: 477 IDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADE 536

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802
           +F  LMGDEVEPRR FI+ N+L +  +D
Sbjct: 537 VFVTLMGDEVEPRRAFIENNALLAQNID 564


>gi|302559661|ref|ZP_07312003.1| DNA gyrase, B subunit [Streptomyces griseoflavus Tu4000]
 gi|302477279|gb|EFL40372.1| DNA gyrase, B subunit [Streptomyces griseoflavus Tu4000]
          Length = 686

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 283/648 (43%), Positives = 399/648 (61%), Gaps = 24/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I V
Sbjct: 30  TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADTIDV 88

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 89  TILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 148

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + +K +G+ +   +  G+   PL     A  +TGT VTF    DIF   D
Sbjct: 149 VVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLAR-HEATEETGTSVTFWADGDIFETTD 207

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230
           ++++TL  R +E++FLN  ++I+L D+R                  E + ++  Y+GGI 
Sbjct: 208 YSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKYEVKSVSYHYEGGIV 267

Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            FV Y   R  + +  + I ++      ++S+++AM+WN GY E V  F N I   +GGT
Sbjct: 268 DFVKYLNSRKGELVHPTVIDLEAEDRDRHLSLEVAMQWNGGYTEGVYSFANIIHTHEGGT 327

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  I  Y       +    ++ GDD REG T+++S+K+ +P+F  QTK KL
Sbjct: 328 HEEGFRAALTSLINKYARDKRLLRDKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTKL 387

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++EV++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRKG+L+ 
Sbjct: 388 GNTEVKTFVQKVVYEHLNDWLDRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLES 447

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D+
Sbjct: 448 ASLPGKLSDCQSNDPVKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDR 507

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L +QEI  +I+A GTG+ +D FDI +LRYHKII+M DADVDG HI TLLLTF FR M  
Sbjct: 508 ILQNQEIQAMISAFGTGVHED-FDIERLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 566

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+  G +++ +PPLY I  G+        +   D LI    +    +  DS        L
Sbjct: 567 LVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALIEMGRNAGKRIREDSVQRFKG--L 624

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
                + L+I  + ++       T  + A    +F+    +++    A
Sbjct: 625 GEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 672



 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +GR   K I   S+QR+KGLGEMNA +L  TT++ + R L +V + DA+QADDLF
Sbjct: 600 DALIEMGRNAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 659

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 660 SVLMGEDVEARRAFIQRNAKDVRFLDI 686


>gi|256851124|ref|ZP_05556513.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260660548|ref|ZP_05861463.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282932237|ref|ZP_06337681.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1]
 gi|256616186|gb|EEU21374.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548270|gb|EEX24245.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281303632|gb|EFA95790.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1]
          Length = 647

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/606 (43%), Positives = 373/606 (61%), Gaps = 13/606 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++ +SYD  SIQIL GL+AV+KRP MYIG TD   G++ ++YE++DN++DE++ GY   I
Sbjct: 2   VKANSYDDSSIQILHGLEAVRKRPGMYIGSTD-IKGINQLVYEIVDNSVDEAMAGYGKEI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ D S TV D GRG+PT +H E GI   EVI T LHAGGKF +K+YK SGGLHGVG
Sbjct: 61  NVTIHEDNSITVQDFGRGMPTGMH-ESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALSS+LK+R+ R G  YE  F + G     L   G   + TGT +TF P   +FS
Sbjct: 120 SSVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGSLKHLGKTNDKTGTTITFKPDERVFS 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              + Y+T++ R+RE +FL   V+ +L D+R+P        Y  GI++FVSYL+   K  
Sbjct: 180 TTKYKYETIEERIRESAFLLKGVKFTLKDERTP-NHYEEFLYTDGIKSFVSYLNEG-KDT 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                  +G +D+I I+ + ++NDGY EN + F NN+   DGG+H  G RS  TR    Y
Sbjct: 238 FGDVFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDY 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
            +K    K+ ++++ G D REG ++VLSIK+P+    F  QTK KL + + RS V++ V 
Sbjct: 298 AKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQARSAVDALVY 357

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420
           + +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R
Sbjct: 358 EKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSGKLTPAQSR 417

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   +  ++EI T+I  
Sbjct: 418 NPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHT 477

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G   F I+   Y KIIIMTDAD DGAHI+ LLLTFF+R M  ++  G +YI  PP
Sbjct: 478 IGAGVG-TEFKIDDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIALPP 536

Query: 541 LYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           LY + +G      ++Y   +E LE           ++ F     + +    +  ++   +
Sbjct: 537 LYRLQKGNGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNPESR 596

Query: 597 IDKLIK 602
           +   +K
Sbjct: 597 MLIRVK 602



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNG---DKIKITGPCSLLDTIFSIGRKGIS 735
            + +F  +Y R    + R+      +  L        KI+       L+       KG S
Sbjct: 512 LLLTFFYRYMRPMVEAGRVYIALPPLYRLQKGNGAKAKIEYAWTDEELERDEKAMGKGYS 571

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+   + LMGD+VE RR++I++N
Sbjct: 572 LQRFKGLGEMNADQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVEARRKWIEQN 631


>gi|238787825|ref|ZP_04631622.1| DNA gyrase subunit B [Yersinia frederiksenii ATCC 33641]
 gi|238724168|gb|EEQ15811.1| DNA gyrase subunit B [Yersinia frederiksenii ATCC 33641]
          Length = 522

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/522 (45%), Positives = 336/522 (64%), Gaps = 8/522 (1%)

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 1   MGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 60

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+  
Sbjct: 61  SEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGG 120

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 121 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 180

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I
Sbjct: 181 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEII 240

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G +YI +PPLY + +GK  QY+KD++++E Y +  +L        +    +S   L  
Sbjct: 241 ERGHVYIAQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDGAALHINEHAPALSGEPLER 300

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE 647
            + +   + K I      + +  +   +       E   ++E+       L   LN   +
Sbjct: 301 LVAEHYSVQKTIARMERRYPRALLNNLIYQPTLQEEELSNKEVVTQWIESLVALLNEKEQ 360

Query: 648 KSE-----KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
                      +      + +++    GV   + L+   I     +   +  +++     
Sbjct: 361 HGSSYSAVVRENRERQLFEPILRIRTHGVDTDYELDFDFIHGGEYRKICLLGDKLRGLIE 420

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
               +     ++ ++     LD +    R+G+++QRYKGLGEMN  QLWETT++P+ R +
Sbjct: 421 EGAFVERGDRRVPVSSFEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRM 480

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           LRV + DA  AD LF+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 481 LRVMVKDAIAADQLFTTLMGDAVEPRRAFIEENALRAANIDI 522


>gi|24940620|gb|AAN65247.1|AF329398_37 clorobiocin-resistant gyrase B [Streptomyces roseochromogenes
           subsp. oscitans]
          Length = 572

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 265/552 (48%), Positives = 362/552 (65%), Gaps = 20/552 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SYDA++I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD I VT
Sbjct: 24  ASYDANAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADRIDVT 82

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DG   V DNGRGIP   H  E   A EV++T LHAGGKF    Y VSGGLHGVG+SV
Sbjct: 83  ILADGGVRVVDNGRGIPVGTHPVEKRPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGLSV 142

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS+ L   I  +G  +   + +G    PL     A + TGT +TF    DIF   ++
Sbjct: 143 VNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLAR-HEATSRTGTSLTFWADGDIFETTEY 201

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRS--------------PEPREITMFYKGGIEAFV 233
           +++TL  R +E++FLN  + ++L D+R               P  + ++  Y GGI  FV
Sbjct: 202 SFETLARRFQEMAFLNRGLTLTLTDERPSARATAAADEADSDPAAKTVSYRYDGGITDFV 261

Query: 234 SY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +Y   R  +P   S I I        +S ++A++WN  Y ++V  + N I   +GGTH  
Sbjct: 262 AYLNSRKGEPAHPSVITIAAEDTERLLSAEVALQWNGQYTDSVYSYANGIHTHEGGTHEE 321

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +  Y  +    ++   ++ G+D REG T+++S+K+ +P+F  QTK KL ++
Sbjct: 322 GFRTALTTVVNRYAREKKLLREKDANLSGEDVREGLTAIISVKLGEPQFEGQTKTKLGNT 381

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E R+ V+  V++ L+ W + +P EA  IV+K + A+  R AAR+ARDLTRRKG+L+ A+L
Sbjct: 382 EARTFVQKIVHEHLTDWFDRNPNEAADIVRKAIQAATARVAARKARDLTRRKGLLETAAL 441

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DC   DP  SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L 
Sbjct: 442 PGKLSDCQSNDPAMSEIFVVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDKILH 501

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           +QEI  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  L+ 
Sbjct: 502 NQEIQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVE 560

Query: 531 NGFLYIIKPPLY 542
            G +Y+ +PPLY
Sbjct: 561 EGHVYLSRPPLY 572


>gi|225077504|ref|ZP_03720703.1| hypothetical protein NEIFLAOT_02567 [Neisseria flavescens
           NRL30031/H210]
 gi|224951166|gb|EEG32375.1| hypothetical protein NEIFLAOT_02567 [Neisseria flavescens
           NRL30031/H210]
          Length = 565

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 269/568 (47%), Positives = 366/568 (64%), Gaps = 5/568 (0%)

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++R K PL +      G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR  
Sbjct: 1   MNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQV 60

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR I +Y+E +  +KK K    GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+  V
Sbjct: 61  MTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPV 120

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V   +N  L+ +LEE+P EAKII  K++DA+  R+AAR+AR++TRRKGV+D   LPGKLA
Sbjct: 121 VNEVINQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLA 180

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ 
Sbjct: 181 DCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVA 240

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TLITALG GIG++ F+  KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G++Y
Sbjct: 241 TLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIY 300

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I +PPLY    GK  +Y+KDE   + +L+  +L +   +       I   +L N     L
Sbjct: 301 IAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGEELANTAKQFL 358

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
               +I+      D+  +   + +   +  + +    ++A  L+  L+      E+    
Sbjct: 359 LAKTVIEQESRIIDELVLHAMLHTSPVDLSTAESAGRAVAE-LSGLLDEKEVALERIEGH 417

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
             +   I + R   G      LE   + S   +     +  ++        L    ++  
Sbjct: 418 EGHQF-IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGRGAKLYKGDNEYD 476

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           I      LD + S+ +KG+S+QRYKGLGEMN  QLWETT++P  R LL+V+I DA  AD+
Sbjct: 477 IDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADE 536

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802
           +F  LMGDEVEPRR FI+ N+L +  +D
Sbjct: 537 VFVTLMGDEVEPRRAFIENNALLAQNID 564


>gi|110801950|ref|YP_699349.1| DNA topoisomerase IV subunit B [Clostridium perfringens SM101]
 gi|110682451|gb|ABG85821.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens SM101]
          Length = 648

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 234/608 (38%), Positives = 356/608 (58%), Gaps = 25/608 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N++YD  S+  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   GY
Sbjct: 1   MSNK--NNNYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            +   V LN D S TV DNGRGIPT +H  +  +  E++ T LH GGKFN ++YK SGGL
Sbjct: 58  GNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169
           HGVG +VVNALS WL++ +K+ G IY   F             G    PL V G +  +T
Sbjct: 118 HGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESK-ET 176

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+VTFLP  ++FS  DF +D +  RL+EL+F N  +++ LID R  E      + + G+
Sbjct: 177 GTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGL 236

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
             F+ YL+  K PL  +P+  +G ++  +I    ++ +++ D   EN++ + NNIP  + 
Sbjct: 237 LDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEA 296

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +G ++ +TR    + +K    K+  +   GDD REG T+++ IK+ +P F  QTK 
Sbjct: 297 GTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKT 356

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++E  +++          W+E++   A +I+   L+A+  R+  ++  D  R+K   
Sbjct: 357 KLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALEAAARREKIKKINDAERKKIGK 416

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             A L GK+A C+ ++ + +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + 
Sbjct: 417 GTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 476

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + +++S+E+    TA+GTGI  D+++   L+Y KIIIM+DADVDG HIRTL +T+ +R M
Sbjct: 477 ENVIASEELKIFNTAIGTGI-LDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 535

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ----YVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             LI NG LY+ +PPLY + +    +    Y   ++ LE+                  G 
Sbjct: 536 RPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVG-KGATIQRFKGLGE 594

Query: 582 ISKNDLRN 589
           ++ + L  
Sbjct: 595 MNPDQLWE 602



 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 59/88 (67%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
              DKI        L+ +     KG ++QR+KGLGEMN  QLWETTLNP+TR+L++V I 
Sbjct: 559 KGKDKILYAYSDDELEEVKKKVGKGATIQRFKGLGEMNPDQLWETTLNPETRTLVQVTIE 618

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS 796
           DA++A+ + S LMGD V+PR+ ++ + +
Sbjct: 619 DAAKAEKMVSLLMGDVVQPRKNYMYKYA 646


>gi|18147169|dbj|BAB83065.1| DNA gyrase subunit B [Alcanivorax sp. ST-T3]
 gi|324039432|dbj|BAJ78469.1| DNA gyrase subunit B [Alcanivorax sp. ST-TB]
 gi|324039434|dbj|BAJ78470.1| DNA gyrase subunit B [Alcanivorax sp. ST-TC]
 gi|324039438|dbj|BAJ78472.1| DNA gyrase subunit B [Alcanivorax sp. ST-M1]
 gi|324039440|dbj|BAJ78473.1| DNA gyrase subunit B [Alcanivorax sp. ST-M2]
 gi|324039442|dbj|BAJ78474.1| DNA gyrase subunit B [Alcanivorax sp. ST-M3]
 gi|324039444|dbj|BAJ78475.1| DNA gyrase subunit B [Alcanivorax sp. ST-M4]
 gi|324039446|dbj|BAJ78476.1| DNA gyrase subunit B [Alcanivorax sp. ST-T1]
 gi|324039448|dbj|BAJ78477.1| DNA gyrase subunit B [Alcanivorax sp. ST-T2]
 gi|324039450|dbj|BAJ78478.1| DNA gyrase subunit B [Alcanivorax sp. ST-T4]
 gi|324039460|dbj|BAJ78483.1| DNA gyrase subunit B [Alcanivorax sp. ST-T3]
          Length = 471

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 291/474 (61%), Positives = 370/474 (78%), Gaps = 4/474 (0%)

Query: 32  IGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE 91
           IGDTD  +GLHHM++EV+DN+IDE+L G+   I V ++ D S ++ DNGRGIPT++H+EE
Sbjct: 1   IGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEIKVVIHPDESMSIQDNGRGIPTEMHEEE 60

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151
           G+SAAEVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + 
Sbjct: 61  GVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYN 120

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+   PL V G   + +GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+
Sbjct: 121 HGVPAKPLEVVG-TTDSSGTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLM 179

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYH 270
           D+RS +       Y+GG+ AFVSYL+ +K PL Q      +   D I++++AM+WND Y 
Sbjct: 180 DERSGDE--DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQ 237

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY++K    KK+K S  GDD REG T+V+
Sbjct: 238 ENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVI 297

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP+FSSQTK+KLVSSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RD
Sbjct: 298 SVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARD 357

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR++TRRKG LDIA LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAI
Sbjct: 358 AARKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAI 417

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LPL+GKILNVE+ARFDKMLSSQE+GTLITALG GIG+D ++I KLRYH+IIIMT
Sbjct: 418 LPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIMT 471


>gi|93009658|gb|ABE98141.1| DNA gyrase subunit B [Mesoplasma coleopterae]
          Length = 563

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/539 (45%), Positives = 348/539 (64%), Gaps = 7/539 (1%)

Query: 27  RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86
           RP MYIG T    GLHH+++E++DN++DE++ G+A+ I +T+  +G   V DNGRGIP  
Sbjct: 1   RPGMYIGSTSKA-GLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVG 59

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +  + G SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + +KREG I+
Sbjct: 60  IQADSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIH 119

Query: 147 EMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNS 204
              F  G      + + G   N+TGT V F P  +IF    +F+Y+T+++++++LS+LN 
Sbjct: 120 HQVFSGGGTQQTEIEIIGET-NETGTTVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNK 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            + I L D R  +  E       GI  +V   +  K  +  S   +    D+I +++A++
Sbjct: 179 GLVIELNDLRIDKHVEYHF--PNGILDYVKEKNETKVKINPSIFYVDDKHDDIEVEVALQ 236

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +N  Y EN++ F NNI   +GGTH  GLR +L R I  Y EK     K       DD +E
Sbjct: 237 YNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKE 296

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G   ++SI+  DP++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +
Sbjct: 297 GMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNAN 356

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A   R AA+RAR+ TRRK  LD  SLPGKLADC  +DP+ +EL+LVEGDSAGGSAK GR+
Sbjct: 357 AQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRN 416

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R  QAILPLRGK+LNVER    +  ++ EI +++TA+GTGI +D  D++KLRY KI+IMT
Sbjct: 417 RRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDI-DLSKLRYGKIVIMT 475

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           DADVDGAHIRTLLLTFF+R M  L+ +G +YI +PPLY I  GK + Y   +  LE+  
Sbjct: 476 DADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDVELEELK 534



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 7/138 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    S      +V      V    +    
Sbjct: 429 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLL 488

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    + +    +       L  I  G K+        L+ +    F   R   ++
Sbjct: 489 LTFFYRYMKQLVVDGHVY-IAQPPLYKIEAGKKVAYAYSDVELEELKAGDFKDSR--FTI 545

Query: 737 QRYKGLGEMNASQLWETT 754
           QRYKGLGEM+  QLWETT
Sbjct: 546 QRYKGLGEMDPIQLWETT 563


>gi|182623989|ref|ZP_02951777.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens D str. JGS1721]
 gi|177910882|gb|EDT73236.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens D str. JGS1721]
          Length = 648

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/608 (38%), Positives = 356/608 (58%), Gaps = 25/608 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N++YD  S+  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   GY
Sbjct: 1   MSNK--NNNYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            +   V LN D S TV DNGRGIPT +H  +  +  E++ T LH GGKFN ++YK SGGL
Sbjct: 58  GNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169
           HGVG +VVNALS WL++ +K+ G IY   F             G    PL V G +  +T
Sbjct: 118 HGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESK-ET 176

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+VTFLP  ++FS  DF +D +  RL+EL+F N  +++ LID R  E      + + G+
Sbjct: 177 GTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGL 236

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
             F+ YL+  K PL  +P+  +G ++  +I    ++ +++ D   EN++ + NNIP  + 
Sbjct: 237 LDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEA 296

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +G ++ +TR    + +K    K+  +   GDD REG T+++ IK+ +P F  QTK 
Sbjct: 297 GTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKT 356

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++E  +++          W+E++   A +I+   LDA+  R+  ++  D  R+K   
Sbjct: 357 KLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKKIGK 416

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             A L GK+A C+ ++ + +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + 
Sbjct: 417 GTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 476

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + +++S+E+    TA+GTGI  D+++   L+Y KIIIM+DADVDG HIRTL +T+ +R M
Sbjct: 477 ENVIASEELKIFNTAIGTGI-LDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 535

Query: 526 PSLIHNGFLYIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             LI NG LY+ +PPLY + +       + Y   ++ LE+                  G 
Sbjct: 536 RPLIANGHLYLAQPPLYKVAKLGKGKDKILYAYSDDELEEVKKKVG-KGATIQRFKGLGE 594

Query: 582 ISKNDLRN 589
           ++ + L  
Sbjct: 595 MNPDQLWE 602



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 3/179 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +  NV  + +L      I      +++      D ++      V    +    
Sbjct: 468 IMNTEKQKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLW 527

Query: 681 SIFSFGSKYKRIFSNRI---EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737
             + +      I +  +   +     +  L    DKI        L+ +     KG ++Q
Sbjct: 528 MTYIYRYMRPLIANGHLYLAQPPLYKVAKLGKGKDKILYAYSDDELEEVKKKVGKGATIQ 587

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+KGLGEMN  QLWETTLNP+TR+L++V I DA++A+ + S LMGD V+PR+ ++ + +
Sbjct: 588 RFKGLGEMNPDQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYA 646


>gi|110800719|ref|YP_696749.1| DNA topoisomerase IV subunit B [Clostridium perfringens ATCC 13124]
 gi|168205877|ref|ZP_02631882.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens E str. JGS1987]
 gi|168212894|ref|ZP_02638519.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens CPE str. F4969]
 gi|168215696|ref|ZP_02641321.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens NCTC 8239]
 gi|169343680|ref|ZP_02864679.1| DNA topoisomerase II (N-terminal region) [Clostridium perfringens C
           str. JGS1495]
 gi|110675366|gb|ABG84353.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens ATCC 13124]
 gi|169298240|gb|EDS80330.1| DNA topoisomerase II (N-terminal region) [Clostridium perfringens C
           str. JGS1495]
 gi|170662593|gb|EDT15276.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens E str. JGS1987]
 gi|170715591|gb|EDT27773.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens CPE str. F4969]
 gi|182382313|gb|EDT79792.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens NCTC 8239]
          Length = 648

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/608 (38%), Positives = 356/608 (58%), Gaps = 25/608 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N++YD  S+  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   GY
Sbjct: 1   MSNK--NNNYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            +   V LN D S TV DNGRGIPT +H  +  +  E++ T LH GGKFN ++YK SGGL
Sbjct: 58  GNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169
           HGVG +VVNALS WL++ +K+ G IY   F             G    PL V G +  +T
Sbjct: 118 HGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESK-ET 176

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+VTFLP  ++FS  DF +D +  RL+EL+F N  +++ LID R  E      + + G+
Sbjct: 177 GTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGL 236

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
             F+ YL+  K PL  +P+  +G ++  +I    ++ +++ D   EN++ + NNIP  + 
Sbjct: 237 LDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEA 296

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +G ++ +TR    + +K    K+  +   GDD REG T+++ IK+ +P F  QTK 
Sbjct: 297 GTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKT 356

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++E  +++          W+E++   A +I+   LDA+  R+  ++  D  R+K   
Sbjct: 357 KLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKKIGK 416

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             A L GK+A C+ ++ + +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + 
Sbjct: 417 GTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 476

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + +++S+E+    TA+GTGI  D+++   L+Y KIIIM+DADVDG HIRTL +T+ +R M
Sbjct: 477 ENVIASEELKIFNTAIGTGI-LDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 535

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ----YVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             LI NG LY+ +PPLY + +    +    Y   ++ LE+                  G 
Sbjct: 536 RPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVG-KGATIQRFKGLGE 594

Query: 582 ISKNDLRN 589
           ++ + L  
Sbjct: 595 MNPDQLWE 602



 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 3/179 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +  NV  + +L      I      +++      D ++      V    +    
Sbjct: 468 IMNTEKQKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLW 527

Query: 681 SIFSFGSKYKRIFSNRI---EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737
             + +      I +  +   +     +       DKI        L+ +     KG ++Q
Sbjct: 528 MTYIYRYMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGATIQ 587

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+KGLGEMN  QLWETTLNP+TR+L++V I DA++A+ + S LMGD V+PR+ ++ + +
Sbjct: 588 RFKGLGEMNPDQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYA 646


>gi|18311051|ref|NP_562985.1| DNA topoisomerase IV subunit B [Clostridium perfringens str. 13]
 gi|18145733|dbj|BAB81775.1| DNA topoisomerase IV subunit B [Clostridium perfringens str. 13]
          Length = 650

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 234/608 (38%), Positives = 356/608 (58%), Gaps = 23/608 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  + +N++YD  S+  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   GY
Sbjct: 1   MYMSNKNNNYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            +   V LN D S TV DNGRGIPT +H  +  +  E++ T LH GGKFN ++YK SGGL
Sbjct: 60  GNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169
           HGVG +VVNALS WL++ +K+ G IY   F             G    PL V G +  +T
Sbjct: 120 HGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESK-ET 178

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+VTFLP  ++FS  DF +D +  RL+EL+F N  +++ LID R  E      + + G+
Sbjct: 179 GTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGL 238

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
             F+ YL+  K PL  +P+  +G ++  +I    ++ +++ D   EN++ + NNIP  + 
Sbjct: 239 LDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEA 298

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +G ++ +TR    + +K    K+  +   GDD REG T+++ IK+ +P F  QTK 
Sbjct: 299 GTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKT 358

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++E  +++          W+E++   A +I+   LDA+  R+  ++  D  R+K   
Sbjct: 359 KLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKKIGK 418

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             A L GK+A C+ ++ + +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + 
Sbjct: 419 GTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 478

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + +++S+E+    TA+GTGI  D+++   L+Y KIIIM+DADVDG HIRTL +T+ +R M
Sbjct: 479 ENVIASEELKIFNTAIGTGI-LDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 537

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ----YVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             LI NG LY+ +PPLY + +    +    Y   ++ LE+                  G 
Sbjct: 538 RPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVG-KGATIQRFKGLGE 596

Query: 582 ISKNDLRN 589
           ++ + L  
Sbjct: 597 MNPDQLWE 604



 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 59/88 (67%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
              DKI        L+ +     KG ++QR+KGLGEMN  QLWETTLNP+TR+L++V I 
Sbjct: 561 KGKDKILYAYSDDELEEVKKKVGKGATIQRFKGLGEMNPDQLWETTLNPETRTLVQVTIE 620

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS 796
           DA++A+ + S LMGD V+PR+ ++ + +
Sbjct: 621 DAAKAEKMVSLLMGDVVQPRKNYMYKYA 648


>gi|1708090|sp|P50075|GYRBS_STRSH RecName: Full=DNA gyrase subunit B, novobiocin-sensitive
 gi|581743|emb|CAA78952.1| gyrase B (novobiocin-sensitive) [Streptomyces caeruleus]
          Length = 684

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 276/663 (41%), Positives = 385/663 (58%), Gaps = 27/663 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             SY+A +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I V
Sbjct: 23  TGSYNASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVTEVVDNSVDEALAGHADTIDV 81

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +   EG  A EV++T LHAGGKF    Y VSGGLHGVGVS
Sbjct: 82  TILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYSVSGGLHGVGVS 141

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + +K +G  +   +  G+          A ++TGT VTF    D+F   +
Sbjct: 142 VVNALSTKVAVEVKTDGYRWTQDYKLGVPTRRCAQ-NEATDETGTTVTFWADPDVFETTE 200

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR---------------------SPEPREITMFY 225
           ++++TL  R +E++FLN  + + L D+R                         R +T +Y
Sbjct: 201 YSFETLSRRFQEMAFLNKGLTLKLTDERESAKAVVGADVAGTDSAETPGEEPVRSVTYYY 260

Query: 226 KGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           +GGI  FV Y   R    +  + I I        +S+++AM+WN  Y E V  F N I  
Sbjct: 261 EGGIVDFVKYLNSRKGDLIHPTVIDIDAEDKERMLSVEIAMQWNSQYSEGVYSFANTIHT 320

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+A+T  +  Y  +    ++   ++ G+D REG T+++S+K+ +P+F  Q
Sbjct: 321 HEGGTHEEGFRAAMTGLVNRYAREKKFLREKDDNLAGEDIREGLTAIISVKLGEPQFEGQ 380

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++E ++ V+  V++ L+ W + HP EA  I++K + A+  R AAR+ARDLTRRK
Sbjct: 381 TKTKLGNTEAKTFVQKIVHEHLTDWFDRHPNEAADIIRKSIQAATARVAARKARDLTRRK 440

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+
Sbjct: 441 GLLESASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEK 500

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF F
Sbjct: 501 ARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLF 559

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           R M  L+  G +Y+ +PPLY I  G+        +   D L+         +  DS    
Sbjct: 560 RFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDSIQRF 619

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
                 N  +  +    +              QA          D E   S   + A  +
Sbjct: 620 KGLGEMNAEELRITTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDV 679

Query: 643 NFI 645
            F+
Sbjct: 680 RFL 682



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           D +  +G+      K  S+QR+KGLGEMNA +L  TT++ D R L +V + DA+QADDLF
Sbjct: 598 DALVELGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDDAAQADDLF 657

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LDI
Sbjct: 658 SVLMGEDVEARRSFIQRNAKDVRFLDI 684


>gi|126734075|ref|ZP_01749822.1| DNA gyrase, B subunit [Roseobacter sp. CCS2]
 gi|126716941|gb|EBA13805.1| DNA gyrase, B subunit [Roseobacter sp. CCS2]
          Length = 489

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 254/490 (51%), Positives = 340/490 (69%), Gaps = 4/490 (0%)

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ + + L+ W EE+P E
Sbjct: 1   MSLTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLMGEKLNEWFEENPNE 60

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AK+I+ K+++A      A R     RRK  +D+     KL DCSE+DP K+E+FLVEGDS
Sbjct: 61  AKMIISKIVEA-AAAREAARKAREIRRKSAMDVNFNASKLKDCSEKDPSKTEVFLVEGDS 119

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           AGGSA+ GR R  QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGIG+D F+I+K
Sbjct: 120 AGGSAQTGRDRSTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFNIDK 179

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYHK+IIMTDADVDGAHIRTLLLTFFFRQMP L+  G+LYI +PPLY ++RGKS  Y+K
Sbjct: 180 LRYHKVIIMTDADVDGAHIRTLLLTFFFRQMPELVEGGYLYIAQPPLYKVSRGKSEVYLK 239

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ ++++YLI Q +   +     +   IS NDLR  +D+A ++ ++++ F  ++ +  +E
Sbjct: 240 DQPAMDEYLIEQGIDGAML-RQGNGEEISGNDLRRVVDEARQLKRVLEAFPTHYPRHILE 298

Query: 615 QAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-NNSDILVKRIARGVQE 673
           QA I+G F   +        A ++A RL+ IA + E+ W G I  +  + + RI RGV+E
Sbjct: 299 QAAIAGAFVAGAVDNDLQGTADRVAQRLDLIALEWERGWQGRITQDKGMRLARILRGVEE 358

Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733
              L+G  +    ++    F+  +++ Y    +L+       I GP  LL  I   G KG
Sbjct: 359 VRTLDGPMLRGGEARRTGTFTQSLQDVYNLPATLVRKDRSQVIHGPLDLLKAILEEGEKG 418

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           +S+QRYKGLGEMN  QLWETTL+PD R+LL+VK+ D ++ADDLF++LMGD VEPRREFIQ
Sbjct: 419 LSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVEDVAEADDLFTKLMGDVVEPRREFIQ 478

Query: 794 ENSLPS-ALD 802
            N+L    LD
Sbjct: 479 NNALNVENLD 488


>gi|115524952|ref|YP_781863.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisA53]
 gi|115518899|gb|ABJ06883.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisA53]
          Length = 685

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 242/649 (37%), Positives = 354/649 (54%), Gaps = 23/649 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+AD I 
Sbjct: 38  EAGDYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHADFIE 96

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L+ DG  TV+DNGRGIP D H +    SA EVIM  LH+GGKF+ K Y+ SGGLHGVG
Sbjct: 97  VELSADGFLTVTDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVG 156

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALSS L++ + R   +Y+M+F  G     L   G   N  GT + F P ++IF +
Sbjct: 157 VSVVNALSSLLEVEVARGQQLYKMTFERGHPKGKLEDLGKVHNRRGTRIRFKPDTEIFGA 216

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V I               P E +  + GG++ F+    
Sbjct: 217 KAAFKPQRLFKMARSKAYLFGGVVIRWKCDPELLKGLEDVPSEDSFHFPGGLKDFLGAAI 276

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
            +   +       +  R+  + + + A+ W       +  + N +P  DGGTH SG+RSA
Sbjct: 277 HNDTLVHPDIFSGKSGRNGAHGACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGMRSA 336

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E+    K+   SV  +D   G   +LS+ + +P F  QTK++L ++E + +
Sbjct: 337 LLRGLKDHAERVGQGKRA-SSVTSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQKI 395

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + D    WL  +P +A  +++ +++ +  R   R  ++   RK  +    LPGKLA
Sbjct: 396 VEQAIKDPFDHWLSGNPAQANKLLEFIIERADERLRRRAEKE-ISRKTAVKKLRLPGKLA 454

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+    + SELF+VEGDSAGGSAKQGR R+ QAILPLRGKILNV  A  DK++++ ++ 
Sbjct: 455 DCTNTAAEGSELFIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVASAGKDKVVANAQLS 514

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G G + +  + LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI +G LY
Sbjct: 515 DLIQALGCGTGAN-YREDDLRYARIIIMTDADVDGAHIASLLITFFYRQMPKLIDDGHLY 573

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD-- 593
           +  PPLY +T G    Y +D+   E+ L  +  +         KG+     +   + +  
Sbjct: 574 LAVPPLYRLTHGAKTVYARDDAHKEELLKKEFNANAKVDVGRFKGL--GEMMPAQLKETT 631

Query: 594 -----ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                   +   + D         +E+ + +      +        AS 
Sbjct: 632 MDPAKRTLLRVNLADIDREGTADSVERLMGTKAEARFAFISDKAEFASD 680



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 7/72 (9%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEPRREFIQE 794
           R+KGLGEM  +QL ETT++P  R+LLRV + D  +   AD +  RLMG + E R  FI +
Sbjct: 615 RFKGLGEMMPAQLKETTMDPAKRTLLRVNLADIDREGTADSV-ERLMGTKAEARFAFISD 673

Query: 795 NSLPSA---LDI 803
            +  ++   LD+
Sbjct: 674 KAEFASDEMLDV 685


>gi|260664458|ref|ZP_05865310.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii SJ-7A-US]
 gi|260561523|gb|EEX27495.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii SJ-7A-US]
          Length = 652

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 263/605 (43%), Positives = 371/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + +SYD  SIQIL GL+AV+KRP MYIG TD   G++ ++YE++DN++DE++ GY   I 
Sbjct: 8   KANSYDDSSIQILHGLEAVRKRPGMYIGSTD-IKGINQLVYEIVDNSVDEAMAGYGKEIN 66

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D GRG+PT +H E GI   EVI T LHAGGKF +K+YK SGGLHGVG 
Sbjct: 67  VTIHEDNSVTVQDFGRGMPTGMH-ESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVGS 125

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS+LK+R+ R G  YE  F + G     L   G   + TGT +TF P   +FS 
Sbjct: 126 SVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGTLKHLGKTNDKTGTTITFKPDERVFST 185

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T++ R+RE +FL   V+ +L D+R+P        Y  GI++FVSYL+   K   
Sbjct: 186 TKYKYETIEERIRESAFLLKGVKFTLKDERTP-NHYEEFLYTDGIKSFVSYLNEG-KDTF 243

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D+I I+ + ++NDGY EN + F NN+   DGG+H  G RS  TR    Y 
Sbjct: 244 GDVFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDYA 303

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K    K+ ++++ G D REG ++VLSIK+P+    F  QTK KL + + RS V++ V +
Sbjct: 304 KKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQARSAVDALVYE 363

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 364 KMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSGKLTPAQSRN 423

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 424 PKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHTI 483

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G + F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  ++  G +YI  PPL
Sbjct: 484 GAGVGAE-FKIEDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIALPPL 542

Query: 542 YGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y + +       ++Y   +E LE           ++ F     + +    +  ++   ++
Sbjct: 543 YRLQKGSGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNPDSRM 602

Query: 598 DKLIK 602
              +K
Sbjct: 603 LIRVK 607



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   ++ I       +     N D ++           +    
Sbjct: 459 VLNTQKAKLQDIFKNEEINTMIHTIGAGVGAEFKIEDANYDKIIIMTDADDDGAHIQILL 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      + + R+      +  L    G K KI        L+       KG S+Q
Sbjct: 519 LTFFYRYMRPMVEAGRVYIALPPLYRLQKGSGAKAKIEYAWTDEELERDEKAMGKGYSLQ 578

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEMNA QLW+TT+NPD+R L+RVKI DA+ A+   + LMGD+VE RR++I++N
Sbjct: 579 RFKGLGEMNADQLWQTTMNPDSRMLIRVKIDDAALAERRVTTLMGDKVEVRRKWIEQN 636


>gi|168208771|ref|ZP_02634396.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713087|gb|EDT25269.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 648

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/608 (38%), Positives = 356/608 (58%), Gaps = 25/608 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N++YD  S+  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   GY
Sbjct: 1   MSNK--NNNYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            +   V LN D S TV DNGRGIPT +H  +  +  E++ T LH GGKFN ++YK SGGL
Sbjct: 58  GNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169
           HGVG +VVNALS WL++ +K+ G IY   F             G    PL V G +  +T
Sbjct: 118 HGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESK-ET 176

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+VTFLP  ++FS  DF +D +  RL+EL+F N  +++ LID R  E      + + G+
Sbjct: 177 GTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGL 236

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
             F+ YL+  K PL  +P+  +G ++  +I    ++ +++ D   EN++ + NNIP  + 
Sbjct: 237 LDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEA 296

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +G ++ +TR    + +K    K+  +   GDD REG T+++ IK+ +P F  QTK 
Sbjct: 297 GTHETGFKTGMTRAFKEWAKKLNLVKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKT 356

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++E  +++          W+E++   A +I+   LDA+  R+  ++  D  R+K   
Sbjct: 357 KLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKKIGK 416

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             A L GK+A C+ ++ + +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + 
Sbjct: 417 GTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 476

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + +++S+E+    TA+GTGI  D+++   L+Y KIIIM+DADVDG HIRTL +T+ +R M
Sbjct: 477 ENVIASEELKIFNTAIGTGI-LDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 535

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ----YVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             LI NG LY+ +PPLY + +    +    Y   ++ LE+                  G 
Sbjct: 536 RPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVG-KGATIQRFKGLGE 594

Query: 582 ISKNDLRN 589
           ++ + L  
Sbjct: 595 MNPDQLWE 602



 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 3/179 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E  +  NV  + +L      I      +++      D ++      V    +    
Sbjct: 468 IMNTEKQKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLW 527

Query: 681 SIFSFGSKYKRIFSNRI---EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737
             + +      I +  +   +     +       DKI        L+ +     KG ++Q
Sbjct: 528 MTYIYRYMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGATIQ 587

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+KGLGEMN  QLWETTLNP+TR+L++V I DA++A+ + S LMGD V+PR+ ++ + +
Sbjct: 588 RFKGLGEMNPDQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYA 646


>gi|238855703|ref|ZP_04646000.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 269-3]
 gi|282932217|ref|ZP_06337664.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1]
 gi|238831688|gb|EEQ24028.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 269-3]
 gi|281303667|gb|EFA95822.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1]
          Length = 647

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 263/605 (43%), Positives = 371/605 (61%), Gaps = 13/605 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + +SYD  SIQIL GL+AV+KRP MYIG TD   G++ ++YE++DN++DE++ GY   I 
Sbjct: 3   KANSYDDSSIQILHGLEAVRKRPGMYIGSTD-IKGINQLVYEIVDNSVDEAMAGYGKEIN 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VT++ D S TV D GRG+PT +H E GI   EVI T LHAGGKF +K+YK SGGLHGVG 
Sbjct: 62  VTIHEDNSVTVQDFGRGMPTGMH-ESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALSS+LK+R+ R G  YE  F + G     L   G   + TGT +TF P   +FS 
Sbjct: 121 SVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGTLKHLGKTNDKTGTTITFKPDERVFST 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             + Y+T++ R+RE +FL   V+ +L D+R+P        Y  GI++FVSYL+   K   
Sbjct: 181 TKYKYETIEERIRESAFLLKGVKFTLKDERTP-NHYEEFLYTDGIKSFVSYLNEG-KDTF 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +G +D+I I+ + ++NDGY EN + F NN+   DGG+H  G RS  TR    Y 
Sbjct: 239 GDVFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDYA 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           +K    K+ ++++ G D REG ++VLSIK+P+    F  QTK KL + + RS V++ V +
Sbjct: 299 KKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQARSAVDALVYE 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
            +S +L E+   A+ +VKK   A   R+AA++ARD +R  K       L GKL     R+
Sbjct: 359 KMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSGKLTPAQSRN 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+   +  ++EI T+I  +
Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHTI 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G + F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  ++  G +YI  PPL
Sbjct: 479 GAGVGAE-FKIEDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIALPPL 537

Query: 542 YGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           Y + +       ++Y   +E LE           ++ F     + +    +  ++   ++
Sbjct: 538 YRLQKGSGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNPDSRM 597

Query: 598 DKLIK 602
              +K
Sbjct: 598 LIRVK 602



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N +  +  ++    ++   ++ I       +     N D ++           +    
Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIHTIGAGVGAEFKIEDANYDKIIIMTDADDDGAHIQILL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG--PCSLLDTIFSIGRKGISMQ 737
             F +      + + R+      +  L    G K KI        L+       KG S+Q
Sbjct: 514 LTFFYRYMRPMVEAGRVYIALPPLYRLQKGSGAKAKIEYAWTDEELERDEKAMGKGYSLQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEMNA QLW+TT+NPD+R L+RVKI DA+ A+   + LMGD+VE RR++I++N
Sbjct: 574 RFKGLGEMNADQLWQTTMNPDSRMLIRVKIDDAALAERRVTTLMGDKVEVRRKWIEQN 631


>gi|311742169|ref|ZP_07715979.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium
           marinum DSM 15272]
 gi|311314662|gb|EFQ84569.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium
           marinum DSM 15272]
          Length = 666

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 283/630 (44%), Positives = 395/630 (62%), Gaps = 17/630 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+YDA +IQ+L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+A  I V
Sbjct: 12  ESTYDASNIQVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHASHIEV 70

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V D+GRGIP D H  E I A  +++T LHAGGKF    YKVSGGLHGVGVS
Sbjct: 71  TLLADGGVKVVDDGRGIPVDEHPIEKIPAVTLVLTSLHAGGKFGGGGYKVSGGLHGVGVS 130

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + ++R+G+ +  SF  G+ D PL     A  +TGT  TF  S DIF   +
Sbjct: 131 VVNALSTRLFVEVRRDGHRWTQSFTYGVPDQPLEQ-HEATTETGTTTTFYASEDIFETTE 189

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------PEPREITMFYKGGIEAFVSYL 236
           ++Y+TL+ R RE++FLN  +++ LID+R              R++   Y GG+  +V ++
Sbjct: 190 YSYETLKTRFREMAFLNKGLELVLIDEREHAEDADDTADEVERQVRFRYDGGLVDYVQHI 249

Query: 237 DRHKK-PLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +   K  + +  I I+   D   +S++LAM+WN  + E+V  F N I   +GGTH  G R
Sbjct: 250 NTGAKAAIHRDIISIERDDDTGGMSLELAMQWNASFSESVHTFANTINTHEGGTHEEGFR 309

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  + E +   KK +  + GDD REG T+++S+K+ +P+F  QTK KL ++E +
Sbjct: 310 AALTTTVNRFAEANNLIKKKEDRLTGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEAK 369

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412
             V+  +N+ L AWLE +P E K IV+K +DA+  R AAR+ARD    RKG L    LPG
Sbjct: 370 GFVQQVLNEQLGAWLEANPAEGKTIVRKSIDAASARMAARKARDLARNRKGFLGSGGLPG 429

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS R+P++ E+F+VEG+SAGGSAK GR    QAILPLRGKILNVE+AR DK+L + 
Sbjct: 430 KLADCSSRNPEECEVFIVEGNSAGGSAKGGRDPRTQAILPLRGKILNVEKARIDKILQNA 489

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E+  +I+ALGTG+ +D FDI KLRYHKI++M DADVDG HI TLLLT  FR M  LI  G
Sbjct: 490 EVQAIISALGTGVHED-FDIAKLRYHKIVLMADADVDGQHISTLLLTLLFRFMKPLIDAG 548

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +Y+ +PPLY I    +   +   +   D L+         L  ++   I +      ++
Sbjct: 549 HVYLAQPPLYKIKWSNATADLAYTDRERDALLAAGAESGKRLPKEAGQAIQRYKGLGEMN 608

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           D+   D  +        +  ++ A ++   
Sbjct: 609 DSELWDTTMDPDARVLRQVTLDDAAMADEI 638



 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 61/89 (68%), Gaps = 6/89 (6%)

Query: 721 SLLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +LL      G++     G ++QRYKGLGEMN S+LW+TT++PD R L +V + DA+ AD+
Sbjct: 578 ALLAAGAESGKRLPKEAGQAIQRYKGLGEMNDSELWDTTMDPDARVLRQVTLDDAAMADE 637

Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           +F+ LMG++VE RR FIQ N+     LDI
Sbjct: 638 IFTILMGEDVEQRRSFIQRNAKDVRFLDI 666


>gi|320104795|ref|YP_004180386.1| DNA topoisomerase IV subunit B [Isosphaera pallida ATCC 43644]
 gi|319752077|gb|ADV63837.1| DNA topoisomerase IV subunit B [Isosphaera pallida ATCC 43644]
          Length = 652

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/622 (39%), Positives = 373/622 (59%), Gaps = 12/622 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S +  +++Y ++SI +L+GL+ V+KRP MYIG  D   GLHH+ +E++DNAIDE + G+A
Sbjct: 10  SRSAASTNYTSESITVLEGLEPVRKRPGMYIGGLDKA-GLHHLCWEIVDNAIDEVMNGHA 68

Query: 62  DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             I V L  DG + +VSDNGRGIP DLH + G SA EVI T LHAGGKF+  +YKV+GGL
Sbjct: 69  SRIVVELEADGRTLSVSDNGRGIPVDLHAKTGKSALEVIFTTLHAGGKFDNNAYKVAGGL 128

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++++KR+G  +  ++  G   + + V G     TGT V F P  +
Sbjct: 129 HGVGASVVNALSERLEVKVKRDGFHFSQTYQRGKPTSEV-VKGEPARGTGTTVRFTPDRE 187

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF  Q F+   +  RL   ++LN  + I  +D+++     +   + GG+  F++ + R +
Sbjct: 188 IFHDQVFDPVLIGERLDIKAYLNKGLSIQFVDRKAGTQ--VEYRHDGGVADFLNEIHRRR 245

Query: 241 KPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
             +  +P      RD+      + LA+ W +   E+VL F N IP +DGGTH  G+R A+
Sbjct: 246 NDVKVAPTVFVLERDDPREGLRLHLALAWTEATDEHVLSFVNTIPTRDGGTHEQGMREAV 305

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           ++ +  +        K    + G+D REG T+VLS+ + +P+F  QTK +L + EVR++V
Sbjct: 306 SKAVRKFFADH-DLLKKGMEIKGEDIREGLTAVLSVNIAEPQFQGQTKGRLNNPEVRALV 364

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI-ASLPGKLA 415
           ES +   L  +  ++    + + ++V+ A   R+A+R A +  RRK  +    +LPGKL 
Sbjct: 365 ESAIRPRLEDFFHKNKSVGEAVAERVIQAWRAREASRAAANQARRKSPVVGRLTLPGKLH 424

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC     ++SELFLVEGDSAGGSAKQGR R  QAILPL+GK+LN E+A   K+L ++E+ 
Sbjct: 425 DCDSSKVEESELFLVEGDSAGGSAKQGRDRRIQAILPLKGKVLNAEQAGRAKVLDNKELS 484

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            +++ALG G+  D +D ++LRY KII++TDAD DG HI TLLLTFF+R +P L++ G ++
Sbjct: 485 DIVSALGCGM-DDQYDPSRLRYGKIILLTDADSDGHHIATLLLTFFYRHLPGLLNEGRVF 543

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +  PPLY IT G+   +  DE +    L     + +I +            L        
Sbjct: 544 LACPPLYKITHGQDTYWAADEAAKAAILAKLPKNAKITMTRFKGLGEMPAKLLFETTLDP 603

Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617
              +L+K   P+ D+ +++  +
Sbjct: 604 ARRRLLKVVVPDEDRHYVDSTI 625



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDEVEPRREF 791
           I+M R+KGLGEM A  L+ETTL+P  R LL+V + D  +   D   + LMG + EPR  F
Sbjct: 580 ITMTRFKGLGEMPAKLLFETTLDPARRRLLKVVVPDEDRHYVDSTITDLMGKDPEPRFRF 639

Query: 792 IQENSLPS-ALDI 803
           I E +  +  +DI
Sbjct: 640 IMEEAYNARDIDI 652


>gi|315605502|ref|ZP_07880539.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312769|gb|EFU60849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 697

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 275/638 (43%), Positives = 370/638 (57%), Gaps = 30/638 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             SY A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GYAD I V
Sbjct: 34  EQSYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYADHIEV 92

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP D H  E     EV+MT LHAGGKF    Y VSGGLHGVG+S
Sbjct: 93  TIQADGGIKVVDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGIS 152

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +   I+R+G ++ MSF N G     L V G   N+TGT   F P   IF   
Sbjct: 153 VVNALSTRVDTEIRRQGYVWRMSFANGGSPITEL-VRGEETNETGTTQVFYPDPTIFETV 211

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------------PEPREITMFY 225
           +F+++TL+ R ++++FLN  ++I+L D+R                        R ++  Y
Sbjct: 212 EFDFETLRQRFQQMAFLNKGLRITLTDEREFATDEGDEIAGEDKASGKEAATHRTVSYCY 271

Query: 226 KGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           + G+  +V Y    +    +    I  +       +S+++AM+W   Y  +V  F N I 
Sbjct: 272 EYGLRDYVEYLDSAKKTDTINNEIIDFEAENDEGTMSVEIAMQWTSAYSSSVHTFANTIN 331

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GG H  G R+ALT  +  Y       +    ++ GDD REG T+V+SIK+ +P+F  
Sbjct: 332 TTEGGMHEEGFRTALTSLVNRYGRDKGLIRDKDDNLTGDDVREGLTAVISIKLTEPQFEG 391

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V   V   L+ W + HP +AK I+ K   A   R AAR+AR+ TRR
Sbjct: 392 QTKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIIAKGQAAQAARVAARKAREATRR 451

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVL+ AS+PGKL DCS R P + E+F+VEGDSAGGSA  GR  E QAILP+RGKILNVE
Sbjct: 452 KGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILPIRGKILNVE 511

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR D+ LSS  I +LITA GTGIG+D FDI+KLRY KI+IM DADVDG HI TLLLT  
Sbjct: 512 KARLDRALSSDTIRSLITAFGTGIGED-FDISKLRYGKIVIMADADVDGQHIATLLLTLL 570

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           FR M  LI  G  +I  PPLY I    +       +   D L+    +    L  +    
Sbjct: 571 FRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDQLLEAGATAGRRLPKEGG-- 628

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           I +      ++D    +  +        +  +++A  +
Sbjct: 629 IQRYKGLGEMNDHELWETTMDPENRILKQVTLDEAADA 666



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
            LL+   + GR+    G  +QRYKGLGEMN  +LWETT++P+ R L +V + +A+ AD+ 
Sbjct: 611 QLLEAGATAGRRLPKEG-GIQRYKGLGEMNDHELWETTMDPENRILKQVTLDEAADADET 669

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           F+ LMGD+V+ RR FIQ N+     LDI
Sbjct: 670 FTILMGDDVDRRRTFIQRNATDVRFLDI 697


>gi|19909653|dbj|BAB87022.1| DNA gyrase subunit B [Vibrio diazotrophicus]
          Length = 467

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 284/469 (60%), Positives = 370/469 (78%), Gaps = 3/469 (0%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DN+IDE+L G+   I VT++ D S +VSD+GRGIPT+LH+EE +S
Sbjct: 1   TDDGTGLHHMVFEVVDNSIDEALAGHCKDIIVTIHEDNSVSVSDDGRGIPTELHEEENVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGHIHTQTYRHGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL V G     TGT V F PS+D F+  +F+YD L  RLRELSFLNS V I LID+R
Sbjct: 121 PQAPLSVVGDTE-KTGTTVRFWPSADTFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER 179

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENV 273
             E ++    Y+GGI+AFV++L+R+K P+ +        R++ IS+++AM+WNDG+ E +
Sbjct: 180 -EEDKQDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNSEREDGISVEVAMQWNDGFQEGI 238

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL+G R+ALTR + +Y++K   SKK K+   GDD REG T+V+S+K
Sbjct: 239 YCFTNNIPQRDGGTHLAGFRAALTRTLNTYMDKEGYSKKAKQRTSGDDAREGLTAVVSVK 298

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV+S VES + + L+ +L EHP EAK++  K++DA+  R+AAR
Sbjct: 299 VPDPKFSSQTKDKLVSSEVKSAVESAMGEKLNEFLAEHPSEAKMVCSKIIDAARAREAAR 358

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 359 KAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 418

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 419 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 467


>gi|319776855|ref|YP_004136506.1| topoisomerase iv subunit b [Mycoplasma fermentans M64]
 gi|238809640|dbj|BAH69430.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318037930|gb|ADV34129.1| Topoisomerase IV subunit B [Mycoplasma fermentans M64]
          Length = 637

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 262/590 (44%), Positives = 356/590 (60%), Gaps = 16/590 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             YD  SIQ LKGL+AV+KRP MYIG TD  +GLHH+I+E++DN+IDE+L GYA+ I+VT
Sbjct: 2   QKYDESSIQQLKGLEAVRKRPGMYIGSTD-VNGLHHLIWEIVDNSIDEALAGYANEISVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GS  V DNGRGIP       G SA E++ T LHAGGKFN+ +YK SGGLHGVG SV
Sbjct: 61  LTKNGSVKVMDNGRGIPVGKTPS-GKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L + + R+  IYE  F NG       +  G+  N  GT V F P+ +IF    
Sbjct: 120 VNALSTKLIVTVYRDKKIYETIFENGDNIVQRTLEVGNT-NKHGTMVEFWPNYEIFKRAK 178

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+T+  RLRE  FL   ++I   D+ S   RE    Y+ G+ AFV +++  K  L   
Sbjct: 179 FSYETIAERLRESCFLIGGLRIHFKDEISD--RETEFMYEDGLHAFVDFINDSKNALG-D 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
               + ++ +I ++   ++ D Y+E VL F NN+  KDGGTH  GL+SALT+    +  +
Sbjct: 236 IKTFKETKRDIEVECGFQYTDSYNETVLSFVNNVKTKDGGTHEIGLKSALTKTFNEFALE 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364
               K  K +  GDD REG T +LS+K+P+    F SQTKEKL + E + VVE  V+   
Sbjct: 296 EKALK-GKNTFDGDDIREGLTIILSVKIPEKLLEFVSQTKEKLGTPEAKGVVEEIVSKNF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMV--RDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             W+ E+   AK I++K+  AS         RA   + +  + +   L GKL     + P
Sbjct: 355 KIWINENKPLAKKILEKIKRASESRAAARKARAEARSTKNALKEKQILSGKLTPAQSKVP 414

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            + ELFLVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR  ++L ++EIGT+I  +G
Sbjct: 415 AEKELFLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLFEILKNEEIGTIINTIG 474

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G+G D FD+ K +Y K++IMTDAD DGAHI+ LLLTFFFR M  L+ NG +YI  PPL+
Sbjct: 475 AGVG-DEFDLKKAQYGKVVIMTDADTDGAHIQILLLTFFFRHMRQLVENGMVYIALPPLF 533

Query: 543 GITR---GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            +T     K + Y  DE  L + L   +            G ++ + L  
Sbjct: 534 KLTSTRGKKEVLYAWDENELRELLQLPNFKNAEVQRYKGLGEMNADQLWE 583



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K   +QRYKGLGEMNA QLWETT+NP TR+L++VKI DA+ A+   S LMGD VEPR+E+
Sbjct: 563 KNAEVQRYKGLGEMNADQLWETTMNPITRTLVQVKIEDAALAERRVSTLMGDNVEPRKEW 622

Query: 792 IQEN 795
           I +N
Sbjct: 623 INKN 626


>gi|296453192|ref|YP_003660335.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JDM301]
 gi|296182623|gb|ADG99504.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. longum JDM301]
          Length = 709

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 260/654 (39%), Positives = 373/654 (57%), Gaps = 30/654 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 43  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 101

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 102 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 161

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND---TGTEVTFLPSS 179
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL   G    +   TGT VTF    
Sbjct: 162 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQ-GDPMTEGESTGTSVTFWADP 220

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREIT 222
            IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + +T
Sbjct: 221 KIFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVT 280

Query: 223 MFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278
             Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N
Sbjct: 281 YQYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFAN 340

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+
Sbjct: 341 TISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQ 400

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ 
Sbjct: 401 FEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKAREN 460

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKIL
Sbjct: 461 TRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKIL 520

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL L
Sbjct: 521 NTERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNL 579

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCD 577
           T FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       +
Sbjct: 580 TLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGE 639

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                      ++ +                     + A     F+     E+ 
Sbjct: 640 GIQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 691



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 622 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 681

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 682 FSMLMGDEVEPRRLFIQRNAKNV 704


>gi|291517729|emb|CBK71345.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum F8]
          Length = 712

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 261/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 46  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 105 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      + G  TGT VTF     
Sbjct: 165 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQDEPMTEGESTGTSVTFWADPK 224

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + IT 
Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTITY 284

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 404

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENT 464

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 465 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 584 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 643

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 644 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 694



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 625 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 684

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 685 FSMLMGDEVEPRRLFIQRNAKNV 707


>gi|325283469|ref|YP_004256010.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus proteolyticus MRP]
 gi|324315278|gb|ADY26393.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus proteolyticus MRP]
          Length = 655

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 279/608 (45%), Positives = 392/608 (64%), Gaps = 23/608 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYI-GDTDGESGLHHMIYEVLDNAIDESLEG 59
           M++   NS+Y ADSI ILKGL+AV+KRP MY+ G T G  G H ++ E++DNAIDE L G
Sbjct: 1   MTN--PNSNYTADSISILKGLEAVRKRPGMYVQGGT-GIDGYHQLLTEIIDNAIDEGLAG 57

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +A+ ITVT++ DGS TV+DNGRGIP D+ K EG SA EVI T LHAGGKF Q +YKVSGG
Sbjct: 58  FANEITVTMHEDGSATVTDNGRGIPVDIMKSEGRSAIEVIFTELHAGGKFGQGAYKVSGG 117

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEVTFLP 177
           LHGVG SVVNALS++L + + + G ++ + F  G++  PL V G    D    T+V+F P
Sbjct: 118 LHGVGSSVVNALSTYLDVTVNKGGQLHHIRFEKGVVTTPLEVLGKTPKDVTWSTKVSFHP 177

Query: 178 SSDIFSVQD--FNYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGIEA 231
              +FS  +  F+YD ++ RLREL++L + ++I L D+     + E RE T   +GGI  
Sbjct: 178 DPAVFSEFENLFDYDRIRRRLRELAYL-TGLKIVLRDERAVLHAGEVREETFHEQGGIAN 236

Query: 232 FVSYLDRHKKP-LMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHL 289
           F + L       L   PI ++G+ +++ +++A    + Y  +N+L + N I  +DGGT L
Sbjct: 237 FAASLVSDSTKLLYDQPIVMRGTSNDVEVEVAFIHANTYSSDNILTYANMIRTRDGGTPL 296

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++A TR +  Y +     K    +  GDD  EG   V+S+K+ DP+F SQ K KL++
Sbjct: 297 TGFKTAYTRILNKYAKDKNLVKSGNPAPSGDDLLEGIYCVISVKLGDPQFESQAKVKLLN 356

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE ++ V + V +  + +LEE+P   K IV+K  +A+  R+AAR+ARD+ RR   L+   
Sbjct: 357 SEAQTAVNAIVGEKFAEFLEENPKVGKTIVEKAAEAARAREAARKARDIVRRSNPLENDD 416

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP +SELF+VEG+SAGGSAK GR R  QAILPLRGKILNVE+A  +K L
Sbjct: 417 LPGKLADCSSQDPSESELFIVEGNSAGGSAKSGRERRFQAILPLRGKILNVEKAELNKSL 476

Query: 470 SSQEIGTLITALGTGIGQD----SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            + EI ++I A+G G+        FD+ +LRYHKIIIMTDAD+DG HI TLLLTFFFR M
Sbjct: 477 KNAEIRSMIAAIGAGVDGSGDQLRFDVEQLRYHKIIIMTDADMDGGHITTLLLTFFFRYM 536

Query: 526 PSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGV 581
             ++  G LYI +PPLY IT  R K+ +Y+ +++ L  ++   +   +          G 
Sbjct: 537 KPVVEQGHLYIAQPPLYRITVGRQKTGEYLYNDDELRQHVARANKEGKKFEIQRFKGLGE 596

Query: 582 ISKNDLRN 589
           ++ + L  
Sbjct: 597 MNADQLWE 604



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 1/74 (1%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
             G+K   +QR+KGLGEMNA QLWETT+NP+TR L +V I D   A+++F  LMG +V P
Sbjct: 581 KEGKK-FEIQRFKGLGEMNADQLWETTMNPETRVLKQVAIEDLLVANEIFEDLMGSDVAP 639

Query: 788 RREFIQENSLPSAL 801
           R+ FIQEN+  + +
Sbjct: 640 RKVFIQENARFAEI 653


>gi|28566177|gb|AAO43433.1| DNA gyrase subunit B [Entomoplasma somnilux]
          Length = 551

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 245/539 (45%), Positives = 358/539 (66%), Gaps = 7/539 (1%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIG T   SGLHH+++E+LDN+IDE++ G A  I V++  DG   V D+GRGIP  +
Sbjct: 1   PGMYIGSTSK-SGLHHLVWEILDNSIDEAMAGAAHEIKVSITKDGEIIVQDDGRGIPVGI 59

Query: 88  HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
            K+ G SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + ++R+G  + 
Sbjct: 60  QKDSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVIVERDGKKFH 119

Query: 148 MSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSS 205
             F NG    + L +   +   TGT V F P  +IF    +F+Y T+++++++L++LN  
Sbjct: 120 QLFSNGGTIQSELEILSDSS-RTGTTVRFKPDPEIFQESVNFDYITIKNKVKQLAYLNKG 178

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           ++++L+D+R  +   +   +  GI  +V   +  K  +  +     G  ++I +++A+++
Sbjct: 179 IKLNLVDERIDKA--VNFHFPNGILDYVREENETKTKINPNVFYTDGKFEDIEVEVALQY 236

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N  Y+EN++ F NNI   +GGTH  GLR +LTR I  Y EK   + K  +    DD +EG
Sbjct: 237 NADYNENLITFVNNINTHEGGTHEDGLRQSLTRVINRYAEKVVKANKQPQKFSWDDVKEG 296

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
              +LSI+  DP+F  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A
Sbjct: 297 VICILSIRHTDPQFEGQTKTKLANPDAKKAVDTIVGDAFEEFLLKSPDDAKAILDKNTNA 356

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
              R AA+RAR+ TRRKG LD  SLPGKLADC  +DP  +EL+LVEGDSAGGSAK GR+R
Sbjct: 357 QKARIAAQRAREETRRKGALDTFSLPGKLADCETKDPTIAELYLVEGDSAGGSAKTGRNR 416

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           ++QAILPLRGK+LNVER +  +  ++ EI +++TA+GTGI +D  D++K+RY KI+IMTD
Sbjct: 417 KHQAILPLRGKVLNVERVQEARAFTNNEIKSIVTAIGTGIKEDL-DLSKIRYGKIVIMTD 475

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           ADVDGAHIRTLLLTFF+R M  L+ NG ++I +PPL+ I  GK + Y   +  LE+  +
Sbjct: 476 ADVDGAHIRTLLLTFFYRYMKDLVRNGNIFIAQPPLFKIEAGKKVAYAYSDAELEELKL 534


>gi|294677614|ref|YP_003578229.1| DNA topoisomerase IV subunit B [Rhodobacter capsulatus SB 1003]
 gi|3128305|gb|AAC16157.1| DNA gyrase subunit b [Rhodobacter capsulatus SB 1003]
 gi|294476434|gb|ADE85822.1| DNA topoisomerase IV, B subunit [Rhodobacter capsulatus SB 1003]
          Length = 652

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/627 (38%), Positives = 337/627 (53%), Gaps = 18/627 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +  + +YDA SI++L+GL+ V+KRP MYIG TD E  LHHM+ E+LDNA+DE++ G+A+ 
Sbjct: 8   STPSETYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHMVAEILDNAMDEAVAGHANR 66

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I V +N DGS TV DNGRGIP D H +  G SA EVI+  LHAGGKF+ K+Y  SGGL+G
Sbjct: 67  IEVEVNADGSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSNKAYSTSGGLNG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS  + +++ R   +YE  F  G+   P+   G+A N  GT VTF P  +IF
Sbjct: 127 VGSSVVNALSDLMVVQVARNKELYEQRFSRGVPQGPVAKLGAAPNRRGTTVTFHPDPEIF 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFVSYLDRHK 240
                    L    R  ++L S V+I           P E T  +  G+  +++      
Sbjct: 187 GSLSLKPARLFKMTRSKAYLFSGVEIRWKTAIADGDTPTEATFHFPNGLADYLAEALTGA 246

Query: 241 KPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                 P        +      S++ A+ W       +  + N +P  +GGTH +G  +A
Sbjct: 247 STYSDKPFAGRVSFEEKYNIPGSVEWAINWTPVRDGFIHSYCNTVPTPEGGTHEAGFWAA 306

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           + + I +Y E+    K  +  +  +D   G  +++SI + +P F  QTK++L + E    
Sbjct: 307 ILKGIRAYGERINNKKAAQ--ITREDMLTGGCALISIFIREPSFVGQTKDRLSTEEAARW 364

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ V D    WL      A  I+  ++  +  R   +  ++ T RK       LPGKL 
Sbjct: 365 VENAVRDYFDTWLTTDTKAAGAILDFLVLRAEERLRRKAEKE-TSRKSATKKLRLPGKLV 423

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  + + +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNV  A   K+  +QEI 
Sbjct: 424 DCSATNREGTELFIVEGDSAGGSAKMARDRTMQALLPLRGKILNVLGAASSKLGQNQEIN 483

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L  ALG G+G   F ++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  LI  G LY
Sbjct: 484 DLAQALGVGLG-TKFRVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRGLIDKGHLY 542

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDD 593
           +  PPLY +T+G    YV D+   + ++                  G +   DL++   +
Sbjct: 543 LACPPLYRLTQGAKRIYVADDAEKDVWMAKGLGGRGKIDVQRFKGLGEMDAKDLKDTTMN 602

Query: 594 ---ALKIDKLIKDFYPNHDKTFIEQAV 617
                 I   I D +       +E+ +
Sbjct: 603 PATRKLIRVTIDDEFAGETDDLVERLM 629



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I    +      +  L     +I +   
Sbjct: 504 YDKIIIMTDADVDGAHIASLLMTFFFTQMRGLIDKGHLYLACPPLYRLTQGAKRIYVADD 563

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADD 775
                 +   +G +G I +QR+KGLGEM+A  L +TT+NP TR L+RV I D  A + DD
Sbjct: 564 AEKDVWMAKGLGGRGKIDVQRFKGLGEMDAKDLKDTTMNPATRKLIRVTIDDEFAGETDD 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++I EN+     LD+
Sbjct: 624 LVERLMGKKPELRFQYITENARFVEELDV 652


>gi|317482363|ref|ZP_07941383.1| DNA gyrase, subunit B [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916243|gb|EFV37645.1| DNA gyrase, subunit B [Bifidobacterium sp. 12_1_47BFAA]
          Length = 712

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 46  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 105 HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      + G  TGT VTF     
Sbjct: 165 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 224

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + +T 
Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 284

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 404

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 464

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 465 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 584 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 643

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 644 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 694



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 625 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 684

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 685 FSMLMGDEVEPRRLFIQRNAKNV 707


>gi|332641361|gb|AEE74882.1| DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 772

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 260/629 (41%), Positives = 368/629 (58%), Gaps = 44/629 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  +  Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  G+A 
Sbjct: 92  ESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGFAS 150

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA--GGKFNQKSYKVSGGL 120
            I V L+ D S ++SDNGRGIPTDLH   G S+ E ++T LHA          Y VSGGL
Sbjct: 151 KIDVVLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGL 210

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ ++R+G  ++  +  G     L        +    GT + F P
Sbjct: 211 HGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWP 270

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT--MFYKGGIEAFVS 234
             ++F+    F+++T+  R+REL+FLN  V ISL  +     R++    FY GG+  +VS
Sbjct: 271 DKEVFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVS 330

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+  KKPL       +   +  ++D++++W  D Y + +L + N+I   DGGTH+ G++
Sbjct: 331 WLNTDKKPLHDVLG-FRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 389

Query: 294 SALTRQITSYVEKSF--------------------------------GSKKDKRSVIGDD 321
           ++LTR + S  +K                                   + +   S+ G+ 
Sbjct: 390 ASLTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHALRTINNEKDISLSGEH 449

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T ++S+K+P+P F  QTK +L + EVR +V+  V + L+ +LE HP   + I+ K
Sbjct: 450 VREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISK 509

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            L+A     AA+RAR+L R K VL  +SLPGKLADCS  DP +SE+F+VEGDSAGGSAKQ
Sbjct: 510 SLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQ 569

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR R  QAILPLRGKILN+ER     M  ++EI  LI  LG G+  + F+   LRYHKII
Sbjct: 570 GRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKII 629

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           I+TDADVDGAHIRTLLLTFFFR   +L   G +Y+  PPL+ + RGK   Y  D+ +L+ 
Sbjct: 630 ILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKK 689

Query: 562 YLINQSLSEE-IELFCDSKGVISKNDLRN 589
              +   +           G +    L  
Sbjct: 690 ITASFPGNASYNIQRFKGLGEMMPAQLWE 718



 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 9/190 (4%)

Query: 621 VFNCESDQEINVSLASKLAN-RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           + N E   E  +    ++ N  L        + ++        ++      V    +   
Sbjct: 585 ILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTL 644

Query: 680 SSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQ 737
              F F  +     +  I      +  +             + L  I +   G    ++Q
Sbjct: 645 LLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYD-DAALKKITASFPGNASYNIQ 703

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS- 796
           R+KGLGEM  +QLWETT+NPDTR L ++ + DA++ + +FS LMG  V+ R+E I+  + 
Sbjct: 704 RFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSSLMGARVDVRKELIKSAAT 763

Query: 797 ---LPSALDI 803
              L   LDI
Sbjct: 764 RMNLE-NLDI 772


>gi|23335943|ref|ZP_00121174.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bifidobacterium longum DJO10A]
          Length = 712

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 46  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 105 HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      + G  TGT VTF     
Sbjct: 165 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 224

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + +T 
Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 284

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 404

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 464

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 465 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 584 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 643

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 644 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 694



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 625 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 684

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 685 FSMLMGDEVEPRRLFIQRNAKNV 707


>gi|227547507|ref|ZP_03977556.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212022|gb|EEI79918.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 712

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 46  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 105 HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      + G  TGT VTF     
Sbjct: 165 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 224

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + +T 
Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 284

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 404

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENT 464

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 465 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 584 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 643

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 644 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 694



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 625 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 684

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 685 FSMLMGDEVEPRRLFIQRNAKNV 707


>gi|323464525|gb|ADX76678.1| DNA topoisomerase IV, B subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 665

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 261/598 (43%), Positives = 372/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N +Y  D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY
Sbjct: 1   MSAKKVN-NYSDDAIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEILNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N D S TV+DNGRG+PT  H   G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEINVTINEDESITVADNGRGMPTGTH-RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L + I R+G I+E  F +G +    ++       TGT VTF P ++
Sbjct: 118 HGVGASVVNALSESLSVEIHRDGEIFEQQFAHGGVPQTKLIKKGKTKKTGTTVTFKPDAE 177

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN++TL  RL+E +FL  +++I+L D R  + R     Y+ GI+AFVSY++  
Sbjct: 178 IFKSATSFNFETLSERLQESAFLLQNLKITLEDCRVGKERSEVYHYEEGIKAFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L    +  QG+ + I +D++ ++ND Y E+++ F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLHDVAL-FQGTANEIEVDVSFQYNDQYSESIMSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL + E RS V+
Sbjct: 297 FNEYARRIGDLKAKDKNLEGNDIREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V + L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 AIVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G D F++    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G +Y
Sbjct: 477 TIIHTIGAGVGND-FNLKDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVY 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K + Y   +E LE           +       G ++ + L  
Sbjct: 536 IALPPLYKLEKGKGKNKKIAYAWTDEELEKLQREMGKGF-VLQRYKGLGEMNPDQLWE 592



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       ++   +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLKDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717
           + ++           +      F F      + + R+      +  L        KI   
Sbjct: 498 NRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR+L+RV+I D  ++    
Sbjct: 558 WTDEELEKLQREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+V PRRE+I+ +
Sbjct: 618 STLMGDKVAPRREWIERH 635


>gi|322688196|ref|YP_004207930.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis 157F]
 gi|320459532|dbj|BAJ70152.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis 157F]
          Length = 696

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 374/653 (57%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 30  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 88

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 89  HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 148

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      + G  TGT VTF     
Sbjct: 149 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 208

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + +T 
Sbjct: 209 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 268

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 269 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 328

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 388

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 448

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 449 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I+ G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 568 LFFRYMRPMINAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 627

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 678



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 609 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 668

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 669 FSMLMGDEVEPRRLFIQRNAKNV 691


>gi|162452728|ref|YP_001615095.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56']
 gi|161163310|emb|CAN94615.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56']
          Length = 645

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 237/637 (37%), Positives = 356/637 (55%), Gaps = 20/637 (3%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y A  I++L+GL+ V+KRP+MYIG TD   G HH+++E++DNA+DE++ G+A  I VTL+
Sbjct: 16  YTAADIEVLEGLEPVRKRPAMYIGGTDA-RGYHHLLWEIVDNAVDEAINGHAKRIEVTLD 74

Query: 70  MD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
            D    TV+D+GRGIP D+H      A E+I   LHAGGKF   +YKVSGGLHGVG SVV
Sbjct: 75  ADLQGATVTDDGRGIPVDVHPRYKRPALELIFCTLHAGGKFASDNYKVSGGLHGVGSSVV 134

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDF 187
           NALS  +++R+ R+G+ ++ +F  G   + L   G+     GT + F P  +IF   + F
Sbjct: 135 NALSELVEVRVLRDGSEHQQTFSRGAPTSKLKK-GAPTRKHGTTIHFRPDPEIFGQGRRF 193

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQS 246
           + +T++ RL   ++L+  ++I+  D  S E   I + +  GI  F+   + +  KP+   
Sbjct: 194 DPETIRERLEAKAYLHGGLEIAFRDLSSGES--IELLHPNGIADFLPKLVAQRGKPVTHP 251

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I        I ++ A++W +   E V  + N IP   GG H SG   A+ + + ++++ 
Sbjct: 252 SIFYVAREGEIRLEAALQWTESTDEYVKSYVNGIPTHAGGAHESGFSGAIVKAVRAFMDA 311

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               +    ++  DD REG   VLSI + DP+F  QTK++L ++E    VE  V   L  
Sbjct: 312 KKV-QPKGVTLTADDIREGIVGVLSIYIQDPQFQGQTKDRLNNAEAGPAVEGMVRPALEQ 370

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV-LDIASLPGKLADCSERDPKKS 425
           W+  +    + IV + + A+  R+A R A     RK       +LPGKLADC+  DP +S
Sbjct: 371 WMLHNGTAGESIVARAILAARAREARREATQQVLRKTPVSHRLNLPGKLADCASTDPSES 430

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQGR R  QAILPLRGK+LN E+A   K+L ++E+  +++ALG G 
Sbjct: 431 ELFIVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTSKVLGNKELQDIVSALGCGF 490

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D FD +KLRY +I ++ DAD DG HI TLLLTFF+R +P L+  G +++ +PPLY I 
Sbjct: 491 GKD-FDASKLRYGRIFLLMDADSDGQHIATLLLTFFYRHLPGLLRGGHVFLAQPPLYRID 549

Query: 546 RGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            GK   +  D+   +  L      ++         G +   DL+    D  +        
Sbjct: 550 VGKETHWALDDAERDRVLAKLPKTAKADISRFKGLGEMPAEDLKATTLDIRR-------- 601

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                +  IE  + +     E   +   +    +  R
Sbjct: 602 -RRALRIVIEGEIETDRILNELMGKDAQARFRFIMER 637



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           + R+KGLGEM A  L  TTL+   R  LR+ I    + D + + LMG + + R  FI E 
Sbjct: 578 ISRFKGLGEMPAEDLKATTLDIRRRRALRIVIEGEIETDRILNELMGKDAQARFRFIMER 637

Query: 796 SLPSALDI 803
           +  + +D+
Sbjct: 638 APNAEIDV 645


>gi|71725925|gb|AAZ39080.1| gyrase subunit B [Exiguobacterium acetylicum]
          Length = 513

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 270/516 (52%), Positives = 366/516 (70%), Gaps = 4/516 (0%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIG T    GLHH+++E++DN+IDE+L GY D I VT+    S  V DNGRGIP 
Sbjct: 1   KRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ +KR   +
Sbjct: 60  DIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204
           Y  ++  G+    L V G    +TGT + F P  +IF    +++YD L  RLREL+FLN 
Sbjct: 120 YYQAYHRGVPAQDLEVIG-TSEETGTTIRFFPDGEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            ++I + D R+ E    +  Y+GGI+++V +L+R K+ +   P+ + G++D I +++A++
Sbjct: 179 GLKIIITDDRADESMTRSFHYEGGIKSYVEHLNRSKEVVHAEPVYVHGTKDGIEVEVALQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +NDG+  N+  FTNNIP  +GGTH +G ++ALTR I  Y +K    K    ++ G+D RE
Sbjct: 239 YNDGFASNIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKDADGTLSGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+++S+K P+P+F  QTK KL +S+ R+V +S  +     ++ E+P  A+ IV+K + 
Sbjct: 299 GMTAIVSVKHPNPQFEGQTKTKLGNSDARTVTDSLFSGAFEQFMLENPTNARAIVEKGMM 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR+LTRRKGVL+++SLPGKLADCS RD   SEL++VEGDSAGGSAK GR 
Sbjct: 359 ASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDASISELYIVEGDSAGGSAKSGRD 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R  QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + FDI K RYHK+IIMT
Sbjct: 419 RHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FDIEKARYHKVIIMT 477

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           DADVDGAHIRTLLLTFF+R M  L+ +G++YI +PP
Sbjct: 478 DADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513


>gi|312133628|ref|YP_004000967.1| gyrb [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772886|gb|ADQ02374.1| GyrB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 696

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 30  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 88

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 89  HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 148

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      + G  TGT VTF     
Sbjct: 149 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 208

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + +T 
Sbjct: 209 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 268

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 269 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 328

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 388

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 448

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 449 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 568 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 627

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 678



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 609 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 668

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 669 FSMLMGDEVEPRRLFIQRNAKNV 691


>gi|23465218|ref|NP_695821.1| DNA gyrase subunit B [Bifidobacterium longum NCC2705]
 gi|189440294|ref|YP_001955375.1| DNA gyrase subunit B [Bifidobacterium longum DJO10A]
 gi|239622838|ref|ZP_04665869.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|23325846|gb|AAN24457.1| DNA gyrase subunit B, novobiocin-sensitive [Bifidobacterium longum
           NCC2705]
 gi|189428729|gb|ACD98877.1| Type IIA topoisomerase B subunit [Bifidobacterium longum DJO10A]
 gi|239514835|gb|EEQ54702.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 696

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 30  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 88

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 89  HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 148

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      + G  TGT VTF     
Sbjct: 149 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 208

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + +T 
Sbjct: 209 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 268

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 269 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 328

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 388

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 448

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 449 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 568 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 627

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 678



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 609 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 668

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 669 FSMLMGDEVEPRRLFIQRNAKNV 691


>gi|319892372|ref|YP_004149247.1| Topoisomerase IV subunit B [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162068|gb|ADV05611.1| Topoisomerase IV subunit B [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 665

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 261/598 (43%), Positives = 373/598 (62%), Gaps = 15/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N +Y  D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY
Sbjct: 1   MSAKKVN-NYSDDAIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEILNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+N D S TV+DNGRG+PT  H   G    EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEINVTINEDESITVADNGRGMPTGTH-RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L + I R+G I+E  F +G +    ++       TGT VTF P ++
Sbjct: 118 HGVGASVVNALSESLSVEIHRDGEIFEQQFAHGGVPQTKLIKKGKTKKTGTTVTFKPDAE 177

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF     FN++TL  RL+E +FL  +++I+L D+R  + R     Y+ GI+AFVSY++  
Sbjct: 178 IFKSATSFNFETLSERLQESAFLLQNLKITLEDRRVGKERSEVYHYEEGIKAFVSYVNEG 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+ L    +  QG+ + I +D++ ++ND Y E+++ F NN+  KDGGTH  G ++A+TR 
Sbjct: 238 KEVLHDVAL-FQGTANEIEVDVSFQYNDQYSESIMSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357
              Y  +    K   +++ G+D REG T+++S+++P+   +F  QTK KL + E RS V+
Sbjct: 297 FNEYARRIGDLKAKDKNLEGNDIREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVD 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415
           + V + L  +LEE    +K +VKK + A   R+AAR+AR+   + +K       L GKL 
Sbjct: 357 AIVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +  ++EI 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I  +G G+G D F++    Y++IIIMTDAD DGAHI+ LLLTFFF+ M  L+  G +Y
Sbjct: 477 TIIHTIGAGVGND-FNLKDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVY 535

Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           I  PPLY +     + K + Y   +E LE           +       G ++ + L  
Sbjct: 536 IALPPLYKLEKGKGKNKKIAYAWTDEELEKLQREMGKGF-VLQRYKGLGEMNPDQLWE 592



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       ++   +N 
Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLKDSNY 497

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717
           + ++           +      F F      + + R+      +  L        KI   
Sbjct: 498 NRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYA 557

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR+L+RV+I D  ++    
Sbjct: 558 WTDEELEKLQREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRV 617

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+V PRRE+I+ +
Sbjct: 618 STLMGDKVAPRREWIERH 635


>gi|90424324|ref|YP_532694.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18]
 gi|90106338|gb|ABD88375.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18]
          Length = 685

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/654 (37%), Positives = 358/654 (54%), Gaps = 26/654 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A  I V
Sbjct: 39  EGDYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIEV 97

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           TL  DG  TVSDNGRGIP D H +    SA EVIM  LH+GGKF+ K Y+ SGGLHGVGV
Sbjct: 98  TLAADGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVGV 157

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SV 184
           SVVNALS  L++ + R   +Y+M+F  G+    L   G   N  GT + F P   IF   
Sbjct: 158 SVVNALSCLLEVEVARSQQLYKMTFERGLPMGKLESLGKVHNRRGTTIRFKPDPQIFGPK 217

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDR 238
             F    L    R  ++L   V+I               P E T  + GG++ F+     
Sbjct: 218 AAFKPQRLFKMARSKAYLFGGVEIRWHCDPELLKGLEGVPAEDTFHFPGGLKDFLGAAIH 277

Query: 239 HKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +   +       +  R   +   + A+ W       +  + N +P  DGGTH +G+RSAL
Sbjct: 278 NDTLVHPDIFSGRSGRVGAHGGCEWAVAWTADADGFLSSYCNTVPTPDGGTHEAGMRSAL 337

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            R +  + E++   K+   S+  +D   G   +LS+ + +P F  QTK++L ++E + +V
Sbjct: 338 LRGLKDHAERAGQGKRA-SSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQKIV 396

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + D    WL  +PL+A  +++ VL+ +  R   R+ ++   RK  +    LPGKLAD
Sbjct: 397 EQAIKDPFDHWLSGNPLQANKLLEFVLERADERLRRRQEKE-ISRKTAVKKLRLPGKLAD 455

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C+    + SELF+VEGDSAGGSAKQGR R+ QAILPLRGKILNV  A  DK+ ++ ++  
Sbjct: 456 CTNTAAEGSELFIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVASATRDKLTANAQLSD 515

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L+ A+G G G + +  + LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI  G LY+
Sbjct: 516 LMQAIGCGSGAN-YREDDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLYL 574

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
             PPLY +T G    Y +D+   E  L ++  +         KG+     +   + +   
Sbjct: 575 AVPPLYRLTHGAKTVYARDDAHKEQLLKSEFNANAKVDVGRFKGL--GEMMPAQLKET-- 630

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                     +  K  + +  ++ +    +   +   + +K   R  FI+EK+E
Sbjct: 631 --------TMDPAKRTLLRVALADIDREGTADSVERLMGTKAEARFAFISEKAE 676



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 7/72 (9%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEPRREFIQE 794
           R+KGLGEM  +QL ETT++P  R+LLRV + D  +   AD +  RLMG + E R  FI E
Sbjct: 615 RFKGLGEMMPAQLKETTMDPAKRTLLRVALADIDREGTADSV-ERLMGTKAEARFAFISE 673

Query: 795 NSLPSA---LDI 803
            +  ++   LD+
Sbjct: 674 KAEFASEDLLDV 685


>gi|28630989|gb|AAO45882.1| DNA gyrase subunit B [Mesoplasma chauliocola]
          Length = 560

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/567 (42%), Positives = 343/567 (60%), Gaps = 12/567 (2%)

Query: 20  GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDN 79
            L+AV+KRP MYIG TD   GLHH+++E++DN+IDE+L GY   I VTL  +GS TV+DN
Sbjct: 1   WLEAVRKRPGMYIGSTD-VRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADN 59

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRG+P  +H   G    EVI + LHAGGKF    YK SGGLHGVG SVVNALS    + I
Sbjct: 60  GRGVPIGMHS-TGRPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTI 118

Query: 140 KREGNIYEMSFINGILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRE 198
            R+  + E+ F NG   N PL   G   N TGT V FLP   IF+   F++ T+  RL+E
Sbjct: 119 YRDKKVNEIEFTNGGKLNIPLTEVG-TTNKTGTIVNFLPDDSIFNTTKFSFTTITERLKE 177

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
            + LNS ++I++ DK + +  E     + G+  FV  L       +  P+ I G    I+
Sbjct: 178 SALLNSGLRITITDKINDKFVEYQF--ENGLVEFVKELSSEFT-QITEPVVITGESKRIA 234

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
            ++ +++ + ++E +L F NN+   DGGTH++G ++ L R I  Y + +   K     + 
Sbjct: 235 SEICIQYTEDFNETILGFANNVKTGDGGTHITGFKTGLVRAINDYAKNNKILKDKDPRLD 294

Query: 319 GDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
            +D REG  +++++K+P+    +  QTK KL + + +  VE    D ++ WL E+ + A 
Sbjct: 295 SNDLREGLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKIAVEQVTYDFMNFWLIENKVPAT 354

Query: 377 IIVKKVLDASMVRDAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
            I++K + A   R+ AR+AR   R  KG     ++ GKL     R  + +EL+LVEGDSA
Sbjct: 355 KIIEKAMLARKAREEARKARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELYLVEGDSA 414

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR R  QAILPLRGK++N E+A+  +++ ++EI T+ITA+G GIG   FD+N +
Sbjct: 415 GGSAKSGRDRTFQAILPLRGKVINSEKAKLAELMKNEEIQTIITAIGAGIG-QDFDVNDI 473

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-GKSLQYVK 554
            Y K+IIMTDAD DGAHI+TLLLTFF+R M  LI N  ++I  PPLY +T   +   Y+ 
Sbjct: 474 NYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADRKFIYLW 533

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGV 581
           DEE L D+    +   EI+ +     +
Sbjct: 534 DEEELADFAKTATKKYEIQRYKGLGEM 560



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 3/160 (1%)

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645
             I++   ++           +    QA++     V N E  +   +    ++   +  I
Sbjct: 401 KEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLAELMKNEEIQTIITAI 460

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
                + +  +  N   ++           +      F +      I +  +      + 
Sbjct: 461 GAGIGQDFDVNDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLY 520

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
            L     K         L        K   +QRYKGLGEM
Sbjct: 521 KLTFADRKFIYLWDEEELADFAKTATKKYEIQRYKGLGEM 560


>gi|213690934|ref|YP_002321520.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522395|gb|ACJ51142.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 709

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 43  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 101

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 102 HIEVSILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 161

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      + G  TGT VTF     
Sbjct: 162 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 221

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + +T 
Sbjct: 222 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 281

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 282 QYLNGIKDYVEYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 341

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 342 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 401

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 402 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENT 461

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 462 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 521

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 522 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 580

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 581 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 640

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 641 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 691



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 622 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 681

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 682 FSMLMGDEVEPRRLFIQRNAKNV 704


>gi|268610497|ref|ZP_06144224.1| DNA gyrase subunit B [Ruminococcus flavefaciens FD-1]
          Length = 643

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 277/596 (46%), Positives = 380/596 (63%), Gaps = 12/596 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++YD + IQ+L+GL+AV+KRP MYIG T    GLHH++YE++DN+IDE+L GY
Sbjct: 1   MSQQ-NNNNYDENDIQVLEGLEAVRKRPGMYIGSTGPG-GLHHLVYEIVDNSIDEALAGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V +       VSDNGRGIP  +H +EGISAA V+ T LHAGGKF    YKVSGGL
Sbjct: 59  CTEINVEILEGDVIRVSDNGRGIPVGIHPKEGISAATVVYTILHAGGKFGGGGYKVSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS WL+L +K   +IY   F  G  D  L + G    +TGT V F    +
Sbjct: 119 HGVGASVVNALSEWLELTVKDGEHIYFQRFERGHYDEQLKIIGDTT-ETGTSVMFKADGE 177

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-ITMFYKGGIEAFVSYLD-- 237
           IF    ++Y+ L  RLRE +FLN+ ++I   DKR  +     T+ Y+GGI  FV ++   
Sbjct: 178 IFEHTVYDYEILLKRLREQAFLNAGIKIVFTDKRDKDNIVGETLHYEGGIREFVDHIHAT 237

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R  + L    I + G++ +   ++AM++ND Y+E +L F NNI  KDGG+H +G ++ALT
Sbjct: 238 RGLESLSGEVIYVSGTQGDSFAEIAMQYNDSYNEVILSFANNIHTKDGGSHETGFKNALT 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + I  Y  K    K+ +  + G+D REG T+++S+K+ +  F  QTK +L + EV+  VE
Sbjct: 298 KVINEYGSKMGKLKEGE-KLKGEDVREGLTAIISVKLTECEFEGQTKGRLGNPEVKPFVE 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V + L  +LEE+P  A II  K + A   R+AA+RAR+  R+K     A++P KLADC
Sbjct: 357 KLVTEKLMNFLEENPETANIIFDKCMSALRAREAAKRAREAERKKNAFGNAAMPEKLADC 416

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERD + +E+++VEGDSAGGSAKQGR R  QAIL L GK+LNVE+AR D++  + ++  +
Sbjct: 417 SERDNRYTEIYIVEGDSAGGSAKQGRDRRYQAILALWGKMLNVEKARVDRIYGNDKLAPV 476

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           +TALGTG+G+D FDI KLRY K+IIM DADVDG HIRTLLLTFFFR M  LI NG +YI 
Sbjct: 477 VTALGTGLGED-FDIEKLRYGKVIIMADADVDGMHIRTLLLTFFFRYMRPLITNGNVYIA 535

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKNDLRN 589
           +PPL+ + R K ++Y   +E  + Y+   S   + +          G +    L  
Sbjct: 536 QPPLFRVERKKQVRYAFSDEERDQYIAELSEDGKYKDVAVQRYKGLGEMDPEQLWE 591



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 29/225 (12%)

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             + + +I +   +G    +       ++ +     LN    + ++ +    +    +V 
Sbjct: 421 NRYTEIYIVEGDSAGGSAKQGRDRRYQAILALWGKMLNVEKARVDRIYG--NDKLAPVVT 478

Query: 666 RIARGVQEQFVLE--------------------GSSIFSFGSKYKRIFSNRIEENYLTIL 705
            +  G+ E F +E                     + + +F  +Y R              
Sbjct: 479 ALGTGLGEDFDIEKLRYGKVIIMADADVDGMHIRTLLLTFFFRYMRPLITNGNVYIAQPP 538

Query: 706 SLICNGDKIKITGPCSL-----LDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDT 759
                  K              +  +   G+ K +++QRYKGLGEM+  QLWETT++P+ 
Sbjct: 539 LFRVERKKQVRYAFSDEERDQYIAELSEDGKYKDVAVQRYKGLGEMDPEQLWETTMDPEH 598

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           R+++++ + DA +AD++F+ LMGD+VEPRR FI++N+  +  LD+
Sbjct: 599 RTIVKISMEDALKADEIFTILMGDKVEPRRLFIEKNAKFAQNLDV 643


>gi|223984216|ref|ZP_03634364.1| hypothetical protein HOLDEFILI_01657 [Holdemania filiformis DSM
           12042]
 gi|223963831|gb|EEF68195.1| hypothetical protein HOLDEFILI_01657 [Holdemania filiformis DSM
           12042]
          Length = 638

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 256/595 (43%), Positives = 367/595 (61%), Gaps = 18/595 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +   YD +SIQIL+GL+AV+KRP MYIG TD   GLHH+++E +DNAIDE+L G+
Sbjct: 1   MAKTQK---YDENSIQILEGLEAVRKRPGMYIGSTDS-RGLHHLVWETVDNAIDEALNGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGG 119
              IT+TL  +G+  V D GRG+P  +H   G+   +VI T LHAGGKF+ +  YK SGG
Sbjct: 57  GKKITITLEKNGAVCVEDEGRGMPIGMHAS-GVPTIQVIFTVLHAGGKFSSEGGYKTSGG 115

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALS W+++ + +EG +  M F + G     L   G +   TG+++ F+P 
Sbjct: 116 LHGVGASVVNALSEWVEVTVCQEGQMVSMRFEDGGKKVGKLEKLGKST-KTGSKIRFMPD 174

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS  +FN   +  R RE +FL  ++ + + D+RS +    T  Y+ G++AF+ YL  
Sbjct: 175 KRIFSTIEFNAGLICERARENAFLLKNITMVVKDERSGKT--ETFHYEDGLKAFLEYLHE 232

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +  L    +   G  ++I +  A ++ D Y E+++ F N +  KDGGTH  G R+A T+
Sbjct: 233 DRTVLHDPVV-FTGMANDIEVQCAFQYTDDYQESMVSFVNLVRTKDGGTHEMGFRTAFTK 291

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
               Y  K    K+  ++  G D REG TS++S+ +P+   +F  QTK KL ++E +S V
Sbjct: 292 AFNDYARKLGLLKEKDKNFEGSDVREGLTSIVSVSIPENLLQFEGQTKGKLGTAEAKSAV 351

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414
           ES V D LS +LEE+   + +++KK+  AS  R+AAR+AR+  R  +K       L GKL
Sbjct: 352 ESLVGDKLSFYLEENKELSTMLIKKMQKASQAREAARKAREEARKGKKAGKSEKVLSGKL 411

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           A    +D  + ELFLVEGDSAGGSAKQGR  + QAILPLRGK+LN E+A   ++  ++E+
Sbjct: 412 APAQSKDASRKELFLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKAGLSEIEKNEEL 471

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T++ ALG GIG   FD +   Y+KIIIMTDAD DGAHI+ LLLTFF+R M  LI +G +
Sbjct: 472 NTIVHALGAGIGSG-FDYSDSNYNKIIIMTDADTDGAHIQVLLLTFFYRYMRPLIEHGMV 530

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           YI  PPLY +T+GK L+Y   +E L++  + Q   +         G ++ + L  
Sbjct: 531 YIALPPLYKVTKGKQLRYAYTDEELDE--VKQQWGKVEIQRYKGLGEMNASQLWE 583



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 6/255 (2%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + +    +    +   E     ++   E  L        SK+  R  +           
Sbjct: 376 KMQKASQAREAARKAREEARKGKKAGKSEKVLSGKLAPAQSKDASRKELFLVEGDSAGGS 435

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  K      +   V N E      +    +L   ++ +       +  S +N + 
Sbjct: 436 AKQGRDSKYQAILPLRGKVLNTEKAGLSEIEKNEELNTIVHALGAGIGSGFDYSDSNYNK 495

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCS 721
           ++           +     + +F  +Y R +  + +    L  L  +  G +++      
Sbjct: 496 IIIMTDADTDGAHI--QVLLLTFFYRYMRPLIEHGMVYIALPPLYKVTKGKQLRYAYTDE 553

Query: 722 LLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            LD +    G+  + +QRYKGLGEMNASQLWETT++P++R+L++V I DA QA+   S L
Sbjct: 554 ELDEVKQQWGK--VEIQRYKGLGEMNASQLWETTMDPESRTLIQVSIEDAVQAERNVSIL 611

Query: 781 MGDEVEPRREFIQEN 795
           MGD+   RR +I++N
Sbjct: 612 MGDKANLRRTWIEQN 626


>gi|229824236|ref|ZP_04450305.1| hypothetical protein GCWU000282_01540 [Catonella morbi ATCC 51271]
 gi|229786590|gb|EEP22704.1| hypothetical protein GCWU000282_01540 [Catonella morbi ATCC 51271]
          Length = 708

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 253/678 (37%), Positives = 392/678 (57%), Gaps = 28/678 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y  D+IQIL+GL+AV+KRP MYIG TD + GLHH++YE++DNA+DE+L G+AD I VT
Sbjct: 22  TNYGDDAIQILEGLEAVRKRPGMYIGSTD-QRGLHHLLYEIVDNAVDEALSGFADHIKVT 80

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS  V DNGRG+P  LH   G    EV+ T LHAGGKF Q  YK +GGLHGVG SV
Sbjct: 81  ICQDGSVKVQDNGRGLPVGLHAS-GKPTIEVVFTVLHAGGKFGQGGYKSAGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VNALS+W+++ + R+G  Y+M F N G+    L+ T ++  +  GT V F+P S IF   
Sbjct: 140 VNALSTWVQVEVDRDGYTYQMRFENGGVPVTKLIKTKNSNKSKHGTTVHFMPDSKIFGHA 199

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
             N +T+  RLRE +FL   + I LID+R          +  G+  F++     +K  + 
Sbjct: 200 TINSETIAERLRESAFLLKDLTIELIDERID--YHEVFHFSQGLIDFIT-YLNEEKDTLG 256

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  +   ID A ++NDGY E +L F NN+    GGTH  G+++ +T+    Y  
Sbjct: 257 DIAGFAGEVEGFEIDFAFQYNDGYSETILSFANNVRTGGGGTHEVGMKTGMTKAFNDYAR 316

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363
           K    K   +++ G D REG T+V+S+++P+   +F  QTKEKL + + R +VE+FVN+ 
Sbjct: 317 KVGLLKDKDKNLEGSDVREGLTAVISLRIPEEYLQFEGQTKEKLGTPKARPLVENFVNEK 376

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERD 421
           ++A+L E+   +++I++K + A   R+AAR+ARD  R   K      ++ GKL     +D
Sbjct: 377 MTAYLNENGNFSQMILRKAIKARETREAARKARDAARSGSKKQAQERAISGKLTKAQSKD 436

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
             K+EL+LVEGDSAGGSAK GR+R+ QAILPLRGK++N E+A    +L ++EI T+I  +
Sbjct: 437 ASKNELYLVEGDSAGGSAKLGRNRQYQAILPLRGKVINTEKASMQDILKNEEINTMIYTI 496

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G D FD+  + Y+K+IIMTDAD DGAHI+ LLLTFF+R M  L+  G +Y+  PPL
Sbjct: 497 GAGVGAD-FDLESVNYNKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVYLAMPPL 555

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRN--------- 589
           + +++G   + V +    ++ L ++        +       G ++ + L +         
Sbjct: 556 FKVSKGAGKKQVVEYAWTDEELASKIAKVGKGYVLQRYKGLGEMNADQLWDTTMNPETRL 615

Query: 590 ----FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
                IDD  + ++ +     N  +   +       F  +++  +      + ++  +  
Sbjct: 616 LIRVTIDDGARAERRLTTLMGNKVEPRRKWIERHVSFTLDTEDSLLEMSQGQESSHAHHE 675

Query: 646 AEKSEKSWHGSINNSDIL 663
           +   ++         +++
Sbjct: 676 SLVKQQEGRQEAQEPELI 693



 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 7/121 (5%)

Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGI 734
            + +F  +Y +    + ++      +  +     K ++         L   I  +G KG 
Sbjct: 530 LLLTFFYRYMKPLLEAGKVYLAMPPLFKVSKGAGKKQVVEYAWTDEELASKIAKVG-KGY 588

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QRYKGLGEMNA QLW+TT+NP+TR L+RV I D ++A+   + LMG++VEPRR++I+ 
Sbjct: 589 VLQRYKGLGEMNADQLWDTTMNPETRLLIRVTIDDGARAERRLTTLMGNKVEPRRKWIER 648

Query: 795 N 795
           +
Sbjct: 649 H 649


>gi|322690198|ref|YP_004219768.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320455054|dbj|BAJ65676.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 696

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 375/653 (57%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 30  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 88

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 89  HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 148

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      + G  TGT VTF     
Sbjct: 149 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 208

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + +T 
Sbjct: 209 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 268

Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V YL + +K +   +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 269 QYLNGIKDYVDYLVKVRKAMPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 328

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 388

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 448

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 449 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 568 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 627

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 678



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 609 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 668

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 669 FSMLMGDEVEPRRLFIQRNAKNV 691


>gi|94984653|ref|YP_604017.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus geothermalis DSM
           11300]
 gi|94554934|gb|ABF44848.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus geothermalis DSM
           11300]
          Length = 711

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 272/608 (44%), Positives = 383/608 (62%), Gaps = 21/608 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYI-GDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+  +    Y ADSI ILKGL+AV+KRP MY+ G T G  G H ++ E++DNAIDE L G
Sbjct: 55  MTQALPQDHYTADSISILKGLEAVRKRPGMYVQGGT-GIDGYHQLLTEIIDNAIDEGLAG 113

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +A  + V ++ DGS TV+DNGRGIP D+ K EG  A EVI T LHAGGKF   +YKVSGG
Sbjct: 114 FATEVHVIMHADGSATVTDNGRGIPVDIMKSEGRPAIEVIFTELHAGGKFGGGAYKVSGG 173

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--DTGTEVTFLP 177
           LHGVG SVVNALS++L + + ++GN++ + F  G +  PL V G         T+VTF P
Sbjct: 174 LHGVGSSVVNALSTYLDVTVNKDGNLHHIRFERGTVTTPLEVLGPTPQDVRWATKVTFHP 233

Query: 178 SSDIFSVQD--FNYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGIEA 231
              +FS  +  FNYD ++ RLREL++L + ++I + D+       E RE T   +GGI  
Sbjct: 234 DPTVFSEFENLFNYDRIRGRLRELAYL-TGLKIVVRDERVGLHGGEIREETFHEQGGIAN 292

Query: 232 F-VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHL 289
           F  + +    K L   PI ++G+  ++ +++A    + Y  +N+L + N I  +DGGT L
Sbjct: 293 FARALVTDDSKLLYDQPIVMRGTHSDVEVEVAFIHANTYASDNILTYANMIRTRDGGTPL 352

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++A TR +  Y +     K       GDD  EG   V+S+K+P+P+F SQ K KL++
Sbjct: 353 TGFKTAYTRILNKYAKDKNLIKSGNPVPTGDDLLEGIYCVVSVKLPEPQFESQAKVKLLN 412

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE ++ V + V +  + +LEE+P   + IV+K  +A+  R+AAR+ARD+ RR   L+   
Sbjct: 413 SEAQTAVNAIVGEKFTEFLEENPKIGRTIVEKAAEAARAREAARKARDIVRRSNPLENDD 472

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ +DP +SELF+VEGDSAGGSAK GR R  QAILPLRGKILNVE++  +K+L
Sbjct: 473 LPGKLADCTSQDPAESELFIVEGDSAGGSAKMGRERRYQAILPLRGKILNVEKSDLNKIL 532

Query: 470 SSQEIGTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            + EI  +I A+G G+     +  FD++ LRYHKIIIMTDAD+DG HI TLLLTFF+R M
Sbjct: 533 KNAEIRAMIGAIGAGVEGTGDRMHFDLSNLRYHKIIIMTDADMDGGHITTLLLTFFYRYM 592

Query: 526 PSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGV 581
             +I  G+LYI +PPLY I   R K   Y+  EE L++++   +   +          G 
Sbjct: 593 RPIIEAGYLYIAQPPLYRIMVGREKKGTYLYTEEELKEHVARATKEGKKYEIQRFKGLGE 652

Query: 582 ISKNDLRN 589
           ++   L +
Sbjct: 653 MNAEQLWD 660



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 6/134 (4%)

Query: 675 FVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSLLDTI---FSI 729
            +      F +      I +  +      +  ++   +K    +     L + +      
Sbjct: 579 HITTLLLTFFYRYMRPIIEAGYLYIAQPPLYRIMVGREKKGTYLYTEEELKEHVARATKE 638

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           G+K   +QR+KGLGEMNA QLW+TT+NP+TR+L RV++ D   A+++F  LMG+EV PR+
Sbjct: 639 GKK-YEIQRFKGLGEMNAEQLWDTTMNPETRALKRVQVEDLIIANEVFEDLMGNEVGPRK 697

Query: 790 EFIQENSLPSALDI 803
            FIQEN+  + + I
Sbjct: 698 RFIQENARFAEISI 711


>gi|154248675|ref|YP_001419633.1| DNA topoisomerase IV subunit B [Xanthobacter autotrophicus Py2]
 gi|154162760|gb|ABS69976.1| DNA topoisomerase IV, B subunit [Xanthobacter autotrophicus Py2]
          Length = 678

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 234/628 (37%), Positives = 343/628 (54%), Gaps = 21/628 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y A  I++L+GL+ V++RP MYIG TD    LHH+  EV+DN +DE++ G+A  I V
Sbjct: 32  DADYTAAHIEVLEGLEPVRRRPGMYIGGTDS-KALHHLFAEVIDNCMDEAVAGHATFIEV 90

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
            +  DG  TVSDNGRGIP + H +  G SA EVIMT LHAGGKF+ K Y+ SGGLHGVG+
Sbjct: 91  QMAADGYLTVSDNGRGIPVEEHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGI 150

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SV 184
           SVVNALS  L++ + R   +Y  SF  G+    L   G   N  GT V F P  +IF   
Sbjct: 151 SVVNALSDDLEVEVTRNQTLYRQSFSKGVPQGKLKEVGRITNRRGTRVRFHPDPEIFGPS 210

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDR 238
             F    +    R  ++L   V+I               P + +  + GG+  +++    
Sbjct: 211 ARFEPARVFRMARSKAYLFGGVEIRWSCDPELLKGIEGVPEKTSFRFPGGLRDYLAADLE 270

Query: 239 HKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +  +       +  +   + S++ A+ W      ++  + N IP  DGGTH +GLR+ L
Sbjct: 271 GQTLVHSDIFSGRIQKPGGHGSVEWAVAWVADADGSISSYCNTIPTPDGGTHENGLRAVL 330

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + +  + E+S    K    + GDD   G  ++LS+ + +P F  QTK++L ++E   +V
Sbjct: 331 LKGLKDHAERSGQ-GKRGSVITGDDVTTGCAAMLSVFVREPEFQGQTKDRLATAEAARIV 389

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + D    WL  +P++A  +++ V+D +  R   ++ ++   RK  +    LPGKLAD
Sbjct: 390 EQGLRDPFDHWLAANPVQASRLLEHVIDRAEERLRRKQEKE-VSRKTAVRKLRLPGKLAD 448

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS  +   SE+F+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK+  +Q++  
Sbjct: 449 CSNTEAAGSEIFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASATRDKLAQNQQLAD 508

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L  ALG G+    +    LRY K+IIMTDADVDGAHI +LL+TFFFRQMP LI +G L++
Sbjct: 509 LGQALGCGM-LSHYRDADLRYEKVIIMTDADVDGAHIASLLVTFFFRQMPKLIEDGHLFL 567

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
             PPLY IT+G    Y +D+   E  L  +   +        KG+     +   +     
Sbjct: 568 AVPPLYRITQGAKTLYARDDAHKEKLLKKEFTGKGKVEVGRFKGL--GEMMPAQLK---- 621

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNC 624
            +  +        +  IE A  +   + 
Sbjct: 622 -ETTMDPRTRTLQRVTIEDAEQAATTDL 648



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 5/79 (6%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD--DLFSRLMGDEVEP 787
           G+  + + R+KGLGEM  +QL ETT++P TR+L RV I DA QA   DL  RLMG+  E 
Sbjct: 600 GKGKVEVGRFKGLGEMMPAQLKETTMDPRTRTLQRVTIEDAEQAATTDLVERLMGNRPEA 659

Query: 788 RREFIQENSL---PSALDI 803
           R  FI E +     + LDI
Sbjct: 660 RFAFISERAAFAGEALLDI 678


>gi|1708089|sp|P50074|GYRBR_STRSH RecName: Full=DNA gyrase subunit B, novobiocin-resistant
 gi|581742|emb|CAA78951.1| gyrase B (novobiocin-resistant) [Streptomyces caeruleus]
          Length = 677

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 271/643 (42%), Positives = 389/643 (60%), Gaps = 22/643 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SYDA++I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD I V
Sbjct: 23  TASYDANAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADRIDV 81

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   V DNGRGIP  +H  E   A EV++T LHAGGKF    Y VSGGLHGVG+S
Sbjct: 82  TVLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYGVSGGLHGVGLS 141

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L   I  +G+ +   + +G    PL     A + TGT +TF    DIF   +
Sbjct: 142 VVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLAR-HEATSRTGTSLTFWADGDIFETTE 200

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR--------------SPEPREITMFYKGGIEAF 232
           ++++TL  R +E++FLN  + ++L D+R               P  + ++  Y GGI  F
Sbjct: 201 YSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVSYRYDGGITDF 260

Query: 233 VSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           V +   R  +P   S I I        +S ++A++WN  Y ++V  + N I   +GGTH 
Sbjct: 261 VVHLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQYTDSVYSYANAIHTHEGGTHE 320

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALT  +  Y  +    +    ++ G+D REG T+++S+ + +P+F  QTK KL +
Sbjct: 321 EGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLGN 380

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +EVR++++  V++ L+ W + +P EA  IV+K + A+  R AAR+ARDLTRRKG+L+ A+
Sbjct: 381 TEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETAA 440

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL+DC   DP  SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L
Sbjct: 441 LPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKVL 500

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            +QE   LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M  L+
Sbjct: 501 QNQENQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLV 559

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G +++ +PPLY I   +        +   + L+ +   +   +  DS        L  
Sbjct: 560 EEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKG--LGE 617

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
              + L++  +  D       T  + A    +F+    +++  
Sbjct: 618 MNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEA 660



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QR+KGLGEMNA +L  TT++PD R L +V + DA+ ADDLFS LMG++VE RR FIQ 
Sbjct: 608 SIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEARRHFIQR 667

Query: 795 NSLPSA-LDI 803
           N+     LDI
Sbjct: 668 NAQDVRFLDI 677


>gi|256619114|ref|ZP_05475960.1| gram positive topoisomerase IV [Enterococcus faecalis ATCC 4200]
 gi|256959030|ref|ZP_05563201.1| gram positive topoisomerase IV [Enterococcus faecalis DS5]
 gi|256961877|ref|ZP_05566048.1| gram positive topoisomerase IV [Enterococcus faecalis Merz96]
 gi|256965075|ref|ZP_05569246.1| gram positive topoisomerase IV [Enterococcus faecalis HIP11704]
 gi|257079061|ref|ZP_05573422.1| gram positive topoisomerase IV [Enterococcus faecalis JH1]
 gi|257089935|ref|ZP_05584296.1| topoisomerase IV subunit B [Enterococcus faecalis CH188]
 gi|257416144|ref|ZP_05593138.1| gram positive topoisomerase IV [Enterococcus faecalis AR01/DG]
 gi|257419346|ref|ZP_05596340.1| topoisomerase IV [Enterococcus faecalis T11]
 gi|256598641|gb|EEU17817.1| gram positive topoisomerase IV [Enterococcus faecalis ATCC 4200]
 gi|256949526|gb|EEU66158.1| gram positive topoisomerase IV [Enterococcus faecalis DS5]
 gi|256952373|gb|EEU69005.1| gram positive topoisomerase IV [Enterococcus faecalis Merz96]
 gi|256955571|gb|EEU72203.1| gram positive topoisomerase IV [Enterococcus faecalis HIP11704]
 gi|256987091|gb|EEU74393.1| gram positive topoisomerase IV [Enterococcus faecalis JH1]
 gi|256998747|gb|EEU85267.1| topoisomerase IV subunit B [Enterococcus faecalis CH188]
 gi|257157972|gb|EEU87932.1| gram positive topoisomerase IV [Enterococcus faecalis ARO1/DG]
 gi|257161174|gb|EEU91134.1| topoisomerase IV [Enterococcus faecalis T11]
          Length = 663

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/640 (40%), Positives = 370/640 (57%), Gaps = 15/640 (2%)

Query: 25  KKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP 84
           +KRP MYIG TD   GLHH++YE++DNA+DE+L GY + I VT+  D S  V+D+GRG+P
Sbjct: 2   RKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMP 60

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
           T +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SVVNALS WL++ I R+G 
Sbjct: 61  TGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119

Query: 145 IYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            Y   F + G     L   G      GT VTFLP   IFS  +F+Y+ L  RLRE +FL 
Sbjct: 120 EYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTNFSYEILAERLRESAFLL 179

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
             V+I+L D+R  EP+E    Y+ GI+ FV+YL+  K  L    +   G+++ I ++LA 
Sbjct: 180 KGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDTLTP-VVYFSGAKEGIEVELAY 238

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           ++NDGY ENVL F NN+  KDGGTH  G+++++T+    Y  K    K+  +++ G D R
Sbjct: 239 QYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKDKNLEGSDFR 298

Query: 324 EGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
           EG  +VLSI++P+   +F  QTK KL +   R+VV++ V + +  +L+E+   ++ +++K
Sbjct: 299 EGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENSEMSQSLIRK 358

Query: 382 VLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            + A   R+AAR+AR+     +K     + L GKL     R+PKK+EL+LVEGDSAGGSA
Sbjct: 359 AIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAGGSA 418

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +G G+G   F I    Y K
Sbjct: 419 KQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSIEDCNYDK 477

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           IIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY +++G   + V      
Sbjct: 478 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVI----- 532

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
            +Y        E+        ++ +      ++     +  +        +  I+ A  +
Sbjct: 533 -EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQA 591

Query: 620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                    +        +   + F  E+       S  +
Sbjct: 592 ERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 631



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 356 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 415

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 416 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 475

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 476 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 535

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 536 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 595

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 596 TTLMGDKVEPRRKWIEQH 613


>gi|229817001|ref|ZP_04447283.1| hypothetical protein BIFANG_02256 [Bifidobacterium angulatum DSM
           20098]
 gi|229785746|gb|EEP21860.1| hypothetical protein BIFANG_02256 [Bifidobacterium angulatum DSM
           20098]
          Length = 717

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 256/638 (40%), Positives = 366/638 (57%), Gaps = 26/638 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 51  ESMTPEHYDASDLKVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 109

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D+   EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 110 HIEVTILPDNGIRVVDDGRGIPVDIVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 169

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++ +     PL      +    TGT VTF     
Sbjct: 170 VGISVVNALSTRVDIEVRRQGFHWTQTYKDQHPTAPLAQGQPMTDDESTGTSVTFWADPA 229

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----------------PREITM 223
           IF    ++++TL+ R ++++FLN  ++I+L D R  +                  +  T 
Sbjct: 230 IFETTTYDFETLRSRFQQMAFLNKGLKITLTDLRQLDEAGDEVAGDGDNAAEELHQTATY 289

Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V YL + +K +      I       +  IS ++AM W   Y E+V  F N 
Sbjct: 290 QYVNGIKDYVDYLVKSRKAVPVEDEVINFDAEDLKLGISAEIAMEWTTAYSESVHTFANT 349

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y  +    K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 350 ISTTEGGTHEEGFRAALTSLVNRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTNPQF 409

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK +++K ++AS  R AA++AR+ T
Sbjct: 410 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPSEAKNVIQKAIEASRARLAAKKARENT 469

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 470 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 529

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDINK+RYHK+IIM DADVDGAHI TL LT
Sbjct: 530 TERASLDRMMKSDTIESLITAVGGGYGED-FDINKVRYHKVIIMADADVDGAHIATLNLT 588

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L             + 
Sbjct: 589 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKAKGRQLPKGEG 648

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
                     ++ +                     E A
Sbjct: 649 IQRYKGLGEMSYQELWETTMDPEHRILKQVQIEDAEAA 686



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V+I DA  AD+ 
Sbjct: 630 DRVLAEGKAKGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVQIEDAEAADET 689

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 690 FSMLMGDEVEPRRLFIQRNARNV 712


>gi|257082500|ref|ZP_05576861.1| DNA topoisomerase IV subunit B [Enterococcus faecalis E1Sol]
 gi|257086693|ref|ZP_05581054.1| gram positive topoisomerase IV [Enterococcus faecalis D6]
 gi|256990530|gb|EEU77832.1| DNA topoisomerase IV subunit B [Enterococcus faecalis E1Sol]
 gi|256994723|gb|EEU82025.1| gram positive topoisomerase IV [Enterococcus faecalis D6]
          Length = 663

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/640 (40%), Positives = 370/640 (57%), Gaps = 15/640 (2%)

Query: 25  KKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP 84
           +KRP MYIG TD   GLHH++YE++DNA+DE+L GY + I VT+  D S  V+D+GRG+P
Sbjct: 2   RKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMP 60

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
           T +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SVVNALS WL++ I R+G 
Sbjct: 61  TGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119

Query: 145 IYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            Y   F + G     L   G      GT VTFLP   IFS  +F+Y+ L  RLRE +FL 
Sbjct: 120 EYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTNFSYEILAERLRESAFLL 179

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
             V+I+L D+R  EP+E    Y+ GI+ FV+YL+  K  L    +   G+++ I ++LA 
Sbjct: 180 KGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDTLTP-VVYFSGAKEGIEVELAY 238

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           ++NDGY ENVL F NN+  KDGGTH  G+++++T+    Y  K    K+  +++ G D R
Sbjct: 239 QYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKDKNLEGSDFR 298

Query: 324 EGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
           EG  +VLSI++P+   +F  QTK KL +   R+VV++ V + +  +L+E+   ++ +++K
Sbjct: 299 EGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENSEMSQSLIRK 358

Query: 382 VLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            + A   R+AAR+AR+     +K     + L GKL     R+PKK+EL+LVEGDSAGGSA
Sbjct: 359 AIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAGGSA 418

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +G G+G   F I    Y K
Sbjct: 419 KQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSIEDCNYDK 477

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           IIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY +++G   + V      
Sbjct: 478 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVI----- 532

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
            +Y        E+        ++ +      ++     +  +        +  I+ A  +
Sbjct: 533 -EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQA 591

Query: 620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                    +        +   + F  E+       S  +
Sbjct: 592 ERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 631



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 356 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 415

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 416 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 475

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 476 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 535

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 536 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 595

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 596 TTLMGDKVEPRRKWIEQH 613


>gi|301633042|ref|XP_002945587.1| PREDICTED: DNA gyrase subunit B-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 506

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/500 (49%), Positives = 323/500 (64%), Gaps = 10/500 (2%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY D I V +N D S TV DNGRGIP D H++E  SA EV+M
Sbjct: 8   LHHLVYEVVDNSIDEALAGYCDHIEVAINEDNSITVQDNGRGIPVDYHEKEQKSALEVVM 67

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ SYKVSGGLHGVGVS VNALS  +  ++ R G IY+  +  G     + 
Sbjct: 68  TVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSKHMTTQVFRNGKIYQQEYECGHPLYSVK 127

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE--- 217
             G   + TGT   F P   IF+   ++YD L  R+REL+FLN+ + ISL D R  +   
Sbjct: 128 EVG-TSDITGTRQQFWPDDTIFTETVYSYDILATRMRELAFLNAGINISLTDLRQKDEEG 186

Query: 218 -PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             R        G++ FV Y+D  +   M   I I   +    +++A+ +N  Y EN+  +
Sbjct: 187 NYRTELFHSDEGLKEFVRYVDSSRDHFMNDVIYINTEKQGTPVEVAIMYNTSYSENIHSY 246

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI   +GGTHL+G R ALTR +  Y E +   +K K  + GDD REG T+V+SIK+ +
Sbjct: 247 VNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAE 306

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL ++EV   V+  V + L+ +LEEHP EAK+IV KV+ A+  R AAR+AR
Sbjct: 307 PQFEGQTKTKLGNNEVSGAVDQAVGEALTNYLEEHPKEAKLIVDKVILAAQARVAARKAR 366

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +  +RK  +    +PGKLADCS +DP+  ELFLVEGDSAGGSAKQGR+R  QAILPLRGK
Sbjct: 367 ESVQRKSPMSGGGMPGKLADCSSKDPEICELFLVEGDSAGGSAKQGRNRSFQAILPLRGK 426

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGA 511
           ILNVE+A + K   S E+  +I ALG   G         +I+KLRY K+IIMTDADVDG+
Sbjct: 427 ILNVEKAMWHKAFESDEVNNIIQALGIRFGVDNEDSKEANIDKLRYKKVIIMTDADVDGS 486

Query: 512 HIRTLLLTFFFRQMPSLIHN 531
           HI TL++T FFR  P +I  
Sbjct: 487 HIDTLIMTLFFRYFPQVIQQ 506


>gi|255073667|ref|XP_002500508.1| predicted protein [Micromonas sp. RCC299]
 gi|226515771|gb|ACO61766.1| predicted protein [Micromonas sp. RCC299]
          Length = 703

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 261/602 (43%), Positives = 358/602 (59%), Gaps = 21/602 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + +Y A SIQ+LKGL+ V+KRP MYIG+T    GLHHM++EVLDN +DE   G+A +ITV
Sbjct: 52  SDAYGASSIQVLKGLEPVRKRPGMYIGNTS-TKGLHHMVWEVLDNGVDEVQAGHASLITV 110

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVG 124
           T+  DGS  V D+GRGIPTD+H   G S+ E ++T LHAGGKF      Y VSGGLHGVG
Sbjct: 111 TVEADGSVAVEDDGRGIPTDVHPATGTSSLETVLTVLHAGGKFGGDESGYHVSGGLHGVG 170

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV----TGSAGNDTGTEVTFLPSSD 180
           +SVVNALS   ++ + R    Y  SF  G    P+        + G   GT V F P   
Sbjct: 171 ISVVNALSDSTEVTVWRGDREYRQSFSRGAALAPMTEGSQDVANVGKKKGTRVRFKPDPS 230

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLI-----DKRSPEPREITMFYKGGIEAFVS 234
           IF   QDF+ + +  R++EL+FLNS+            K++ E  E  + + GG++ +V 
Sbjct: 231 IFKERQDFDPNIILARMKELAFLNSTATDEASMDEGDVKKTEEYYEEVLSFPGGLKDYVV 290

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            L+   +PL   PI  +   D + ++ A++W  + Y + +L + N+I   DGGTHL GL+
Sbjct: 291 DLNEGAEPLH-EPITFRAEVDGVQVEGALQWTKEAYTDTLLGYANSIRTSDGGTHLDGLK 349

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            +LTR + +   K+   K+   ++ G+  REG ++V+++ +P P F  QTK +L + EVR
Sbjct: 350 QSLTRAVNTQARKAKLLKEADANLGGEHIREGLSAVIAVWVPQPEFEGQTKTRLGNPEVR 409

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            VVES + + +S  LE +P     I  K   A    +AA+RAR+L RRK VL   SLPGK
Sbjct: 410 KVVESVIGEQVSEHLEFYPNTLGSIFSKASQAQKAAEAAKRARELVRRKSVLRSGSLPGK 469

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L+DCS  DP+ +E+FLVEGDSAGGSAKQGR R  QA+LPLRGKILNVER     M  + E
Sbjct: 470 LSDCSVSDPESTEIFLVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVERKDEASMYKNTE 529

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I +++TALG G+  + FD ++LRY KI+I+TDADVDGAHIRTLLLTF FR    L   G 
Sbjct: 530 ISSMVTALGLGLKGEPFDESQLRYSKIVILTDADVDGAHIRTLLLTFLFRYQRGLFEQGK 589

Query: 534 LYIIKPPLYGIT-----RGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587
           +Y+  PPLY +      +     Y  DE  L+ +L                 G +    L
Sbjct: 590 VYVAVPPLYKVESGRAGKNNPPTYCYDEAQLQAHLATLPEGASRSIQRFKGLGEMMPEQL 649

Query: 588 RN 589
            +
Sbjct: 650 WS 651



 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 115/328 (35%), Gaps = 40/328 (12%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLED 561
            DA++ G HIR  L       +P     G        P +  +      + V +      
Sbjct: 369 ADANLGGEHIREGLSAVIAVWVPQPEFEGQTKTRLGNPEVRKVVESVIGEQVSEHLEFYP 428

Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKTFIEQA 616
             +    S+  +    ++      +L  R  +  +  +   + D     P   + F+ + 
Sbjct: 429 NTLGSIFSKASQAQKAAEAAKRARELVRRKSVLRSGSLPGKLSDCSVSDPESTEIFLVEG 488

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN------------NSDILV 664
             +G    +       ++       LN +  K E S + +                +   
Sbjct: 489 DSAGGSAKQGRDRRFQAVLPLRGKILN-VERKDEASMYKNTEISSMVTALGLGLKGEPFD 547

Query: 665 KRIARGVQEQFVLEGS--------SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
           +   R  +   + +           + +F  +Y+R    + +              +   
Sbjct: 548 ESQLRYSKIVILTDADVDGAHIRTLLLTFLFRYQRGLFEQGKVYVAVPPLYKVESGRAGK 607

Query: 717 TGP-----CSL-----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
             P             L T+     +  S+QR+KGLGEM   QLW TTLNP+TR L R+ 
Sbjct: 608 NNPPTYCYDEAQLQAHLATLPEGASR--SIQRFKGLGEMMPEQLWSTTLNPETRLLKRLT 665

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQE 794
           + DA+ A+  F  LM D+V PRREFI+ 
Sbjct: 666 VDDAAMANKTFQLLMSDKVAPRREFIET 693


>gi|320456980|dbj|BAJ67601.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 696

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 30  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 88

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V++  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 89  HIEVSILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 148

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      + G  TGT VTF     
Sbjct: 149 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 208

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D+R                   + + +T 
Sbjct: 209 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 268

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 269 QYLNGIKDYVEYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 328

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 388

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENT 448

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 449 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 568 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 627

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 678



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 609 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 668

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 669 FSMLMGDEVEPRRLFIQRNAKNV 691


>gi|150019136|ref|YP_001311390.1| DNA topoisomerase IV subunit B [Clostridium beijerinckii NCIMB
           8052]
 gi|149905601|gb|ABR36434.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB
           8052]
          Length = 649

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/605 (37%), Positives = 345/605 (57%), Gaps = 21/605 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +    ++YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E++DN+IDE   GY +
Sbjct: 2   ELKNTNAYDVTDLTSLEKLEPVRIRPGMYIGST-GSKGLHHCIWEIIDNSIDEIANGYGN 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            +T+TLN D S TV DNGRGIPT +H  +  S  E++ T LH GGKF+ K+YK SGGLHG
Sbjct: 61  KVTITLNEDKSVTVLDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDTGT 171
           VG +VVNALS WL++ + + GNIY   F             G     L V G      GT
Sbjct: 121 VGAAVVNALSEWLEVEVYQNGNIYRQRFEYAFDKELKREMPGTSVGSLKVIGKTDKV-GT 179

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           ++TF P  +IFS  DF +D +  RL+EL+F N  +++ LIDKR  +      + + G+  
Sbjct: 180 KITFKPDKEIFSTTDFKFDIIDSRLQELAFQNKGIRLELIDKRKGQEITKEYYSENGLLD 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           F++YL+  K P+ + PI   G R    +    ++ +++ D   E +  + NNIP  + GT
Sbjct: 240 FINYLNESKTPIHEEPIIFDGERTVGELQLYGEVCIQFTDSTTEYIASYVNNIPTTEAGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G ++ +TR    + +K    K+  +   GDD REG T+++ IK+ +P F  QTK KL
Sbjct: 300 HETGFKTGMTRSFKEWSKKLGLVKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKL 359

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E  +++   V    S W+E++   A  I+   L+A+  RD  ++  +  ++K     
Sbjct: 360 GNNEAYTMMNDLVYTKFSEWIEDNKTLATSIINNALEAAKRRDKIKKINEAEKKKIGKGT 419

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A L GK+A C+ +D   +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + + 
Sbjct: 420 APLAGKVAVCTLKDKTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLEN 479

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L+S+E+    TA+GTG   D++    L+Y KIIIM+DADVDG HIRTL +T+ +R M  
Sbjct: 480 VLASEELKIFNTAVGTGT-LDNYREEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRP 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY---LINQSLSEEIELFCDSKGVISK 584
           LI NG LY+ +PPLY + R    + +      +D       Q     +       G ++ 
Sbjct: 539 LIANGHLYLAQPPLYKVYRETKGKTIVKYAYSDDELENTKKQVGKGALIQRYKGLGEMNP 598

Query: 585 NDLRN 589
           + L +
Sbjct: 599 DQLWD 603



 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 49/60 (81%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG  +QRYKGLGEMN  QLW+TTLNP++R+LL+V I DA++A+ + S LMGD VEPR+ +
Sbjct: 583 KGALIQRYKGLGEMNPDQLWDTTLNPESRTLLQVTIEDAAKAEKMVSLLMGDIVEPRKNY 642


>gi|283782558|ref|YP_003373312.1| DNA gyrase, B subunit [Gardnerella vaginalis 409-05]
 gi|297243224|ref|ZP_06927159.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis AMD]
 gi|298253027|ref|ZP_06976819.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis 5-1]
 gi|283442041|gb|ADB14507.1| DNA gyrase, B subunit [Gardnerella vaginalis 409-05]
 gi|296888758|gb|EFH27495.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis AMD]
 gi|297532422|gb|EFH71308.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis 5-1]
          Length = 691

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 257/632 (40%), Positives = 371/632 (58%), Gaps = 28/632 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D++    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 25  DSLAPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 83

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D +  V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 84  HIEVTILPDNAIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 143

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFLPSS 179
           VG+SVVNALS+ +++ ++R+G  +  ++++     PL   G     G  TGT VTF P  
Sbjct: 144 VGISVVNALSTRVEIEVRRQGFHWTQTYVDQHPTAPLAK-GEPMAEGESTGTSVTFWPDG 202

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----------------SPEPREIT 222
            IF    ++++TL+ R ++++FLN  ++ISL D R                   + R ++
Sbjct: 203 TIFETTVYDFETLRSRFQQMAFLNKGLKISLTDLRKPDEAGDEVAGDSESSSEEKHRSVS 262

Query: 223 MFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTN 278
             Y+ GI+ +V YL + +K +      I  +     I I  ++AM+W   Y E V  F N
Sbjct: 263 YQYEHGIKDYVDYLVKSRKAVPVEPDVIDFEAEDLEIGISAEIAMQWTVAYSEAVHTFAN 322

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALT  +  Y  +    K+   ++ GDD REG T+V+S+K+  P+
Sbjct: 323 TISTTEGGTHEEGFRAALTTLVNRYAREKNILKEKDTNLSGDDVREGLTAVVSVKLTTPQ 382

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +SE ++ V+  + + L  W + HP EAK I++K ++AS  R AA++AR+ 
Sbjct: 383 FEGQTKTKLGNSEAKTFVQRVMTEKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKAREN 442

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR    QAILPLRGKIL
Sbjct: 443 TRRKSIFETAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRDPITQAILPLRGKIL 502

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N ERA  D+M+ S+ I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL L
Sbjct: 503 NTERASIDRMMKSETIESLITAVGGGYGED-FDLSKVRYHKVIIMADADVDGAHIATLNL 561

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCD 577
           T FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       +
Sbjct: 562 TLFFRYMRPMITAGYVYVAMPPLYRLKWSKGAHDFVYTDAERDRVLAEGKAAGRQLPKGE 621

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
                      ++ +                 
Sbjct: 622 GIQRYKGLGEMSYQELWETTMDPEHRILKQIH 653



 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L ++ I DA++AD+ 
Sbjct: 604 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQIHIEDAARADET 663

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+  +
Sbjct: 664 FSMLMGDEVEPRRLFIQRNAHDA 686


>gi|19909689|dbj|BAB87040.1| DNA gyrase subunit B [Halorubrum saccharovorum]
          Length = 594

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 262/563 (46%), Positives = 360/563 (63%), Gaps = 9/563 (1%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
            TD   GLHH++YEV+DN+IDE+L GY D ITVT++ D S +VSD+GRGIP D H++   
Sbjct: 1   STD-GRGLHHLVYEVVDNSIDEALAGYCDEITVTIHDDNSVSVSDDGRGIPVDTHEKYDR 59

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
            A EVIMT LHAGGKF+ KSY+VSGGLHGVGVSVVNALS  L++ +KR+G +Y   F  G
Sbjct: 60  PALEVIMTVLHAGGKFDSKSYQVSGGLHGVGVSVVNALSERLEVEVKRDGGVYRHEFHRG 119

Query: 154 ILDNP--LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
                    V      +TGT + F P  +IF    F + TL +RLREL+FLNS V +SL+
Sbjct: 120 EPAEDGFERVRDLDDEETGTYIRFWPDEEIFETTAFEFSTLANRLRELAFLNSGVAVSLV 179

Query: 212 DKRSPEPREITMFYKGGIEAF----VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           D+R   P       +             L+  + P+    I  +  +D+I +++AM+  +
Sbjct: 180 DERDEGPSTTRATRRRSATRRHSGVRRLLNETRTPIHDEVIYFEDEQDDIHVEVAMQATE 239

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
               +V  F NNI  ++GGTHL+G ++ALTR +  Y  +         ++ G+D REG T
Sbjct: 240 ELQGSVHAFANNINTREGGTHLTGFKTALTRTVNDYANEHGLVDDLDANLKGEDVREGLT 299

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K PDP+F  QTK KL +SEVR +VES  ++ L  + EE+P  A+ +V K  +A+ 
Sbjct: 300 AVISVKHPDPQFEGQTKTKLGNSEVRGIVESATHEKLGTFFEENPDTARKVVHKAAEAAR 359

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA++A +LTRRK  L+  +LPGKLADC  RDP ++ELF+VEGDSAGGSAKQGR+REN
Sbjct: 360 ARKAAKKAEELTRRKSALESTALPGKLADCQTRDPTEAELFVVEGDSAGGSAKQGRNREN 419

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPL+GKILNVE+ R D++L + EI  LITA+G GIG++ FDI+ +RY+KIIIMTDAD
Sbjct: 420 QAILPLKGKILNVEKHRLDRILENDEIRALITAIGAGIGEE-FDIDDVRYNKIIIMTDAD 478

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDGAHIRTLLLT  +R M  L+  G++Y  +PPLY +           EE  +  +  + 
Sbjct: 479 VDGAHIRTLLLTLLYRHMKPLLEAGYVYAAQPPLYRVRNRGETYDAMTEEERDRIVAEKC 538

Query: 568 -LSEEIELFCDSKGVISKNDLRN 589
               +        G ++ + L +
Sbjct: 539 DGDPDQVQRFKGLGEMNPDQLWD 561



 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
            +QR+KGLGEMN  QLW+TT++P+ R L R+ + DA+ AD +F+ LMGD V
Sbjct: 544 QVQRFKGLGEMNPDQLWDTTMDPENRRLKRINVHDAAAADRMFNVLMGDAV 594


>gi|183602673|ref|ZP_02964037.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682504|ref|YP_002468887.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190071|ref|YP_002967465.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195477|ref|YP_002969032.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218091|gb|EDT88738.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620154|gb|ACL28311.1| DNA gyrase, B subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248463|gb|ACS45403.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250031|gb|ACS46970.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177774|gb|ADC85020.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793058|gb|ADG32593.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis V9]
          Length = 705

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 262/638 (41%), Positives = 367/638 (57%), Gaps = 26/638 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D +    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 39  DTLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAT 97

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D    EG S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 98  HIEVTILPDNGIRVVDDGRGIPVDEVPGEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHG 157

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL           TGT VTF     
Sbjct: 158 VGISVVNALSTRVDVEVRRQGYYWTQTYIDQHPTGPLERGRAMRDDESTGTSVTFWADPK 217

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----------------PREITM 223
           IF    ++++TL+ R ++++FLN  ++I+L D R  +                  + +T 
Sbjct: 218 IFETTIYDFETLRSRFQQMAFLNKGLKITLTDMRQVDEARDEVAGDGDNTVEELHQTVTY 277

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNN 279
            YK GI+ +V++    R   P+    I I+     I +  ++AM+W   Y E+V  F N 
Sbjct: 278 QYKNGIKDYVAFLVKSRGSAPIEPDVIDIESEDLTIGVSAEIAMQWTSAYSESVHTFANT 337

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  I  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 338 IATTEGGTHEEGFRAALTSMINRYARDKNILKDKDDNLSGDDVREGLTAVISVKLTNPQF 397

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  +N+ L  WL+ HP EAK I++K L+AS  R AA++AR+ T
Sbjct: 398 EGQTKTKLGNSEAKTFVQRVMNEKLGDWLDAHPNEAKNIIQKALEASRARLAAKKARENT 457

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   DP + ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 458 RRKSIFESAGMPDKLKDCQSNDPSECELFIVEGDSAGGSAIQGRNPLTQAILPLRGKILN 517

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+ML S  I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 518 TERASLDRMLKSDTIESLITAIGGGYGED-FDLDKVRYHKVIIMADADVDGAHIATLNLT 576

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 577 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 636

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
                     ++ +                      QA
Sbjct: 637 IQRYKGLGEMSYQELWETTMDPDHRILKQVHIEDALQA 674



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++PD R L +V I DA QAD+ 
Sbjct: 618 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRILKQVHIEDALQADET 677

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+  +
Sbjct: 678 FSMLMGDEVEPRRLFIQRNAHNA 700


>gi|163745982|ref|ZP_02153341.1| DNA topoisomerase IV, B subunit [Oceanibulbus indolifex HEL-45]
 gi|161380727|gb|EDQ05137.1| DNA topoisomerase IV, B subunit [Oceanibulbus indolifex HEL-45]
          Length = 651

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 324/576 (56%), Gaps = 16/576 (2%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+D     + + YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE++
Sbjct: 1   MTDLLSGQEPTDYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEAV 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116
            G+A+ I V LN D S T+ DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+ 
Sbjct: 60  AGHANRIEVELNADYSVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQT 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS  + +++ R   ++E SF  GI   P+   G+A N  GT VTF 
Sbjct: 120 SGGLHGVGASVVNALSDSMVVQVARNRELFEQSFSRGIPQGPVEKIGAAPNRRGTTVTFH 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFVS 234
               IF    F    L   +R  ++L S V+I    +      P E T  + GG+  ++ 
Sbjct: 180 ADEQIFGAHRFKPSRLLKMVRSKAYLFSGVEIRWKSEIEDGDTPMEATFHFPGGLADYLR 239

Query: 235 YLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                     ++P                ++ A+ W       +  + N +P  +GGTH 
Sbjct: 240 ETLGKATTYAENPFAGTVEFQERFGVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHE 299

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G  +A+ + I +Y E +   K     +  DD   G  +++S  + +P F  QTK++L +
Sbjct: 300 GGFWAAILKGIRAYGELANNRKAKD--ITRDDLITGGCALVSCFIREPEFVGQTKDRLAT 357

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +E   +VE+ V D    WL      A  I+  ++  +  R   R+ ++ T RK       
Sbjct: 358 TEAARLVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERMRRRQEKE-TARKSATKKLR 416

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DC+ +  + +ELF+VEGDSAGGS K  R+R  QA+LPL+GKILNV  A   K+ 
Sbjct: 417 LPGKLTDCTSKTREGTELFIVEGDSAGGSGKGARNRNTQALLPLKGKILNVLGAASSKIT 476

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++ EI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI  LL+TFFF QM  LI
Sbjct: 477 TNAEISDLCEALGVGMG-TKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPLI 535

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
            +G LY+  PPL+ +T+G    Y  DE     +L  
Sbjct: 536 DSGHLYLACPPLFRLTQGAKRVYCLDEAEKNMWLEK 571



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I S  +      +  L     ++     
Sbjct: 503 YDKIIIMTDADVDGAHIAALLMTFFFTQMRPLIDSGHLYLACPPLFRLTQGAKRVYCLDE 562

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I + R+KGLGEM+A  L ETT++P TR L+RV + +    +  D
Sbjct: 563 AEKNMWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPATRKLIRVTVDEDVPGETGD 622

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R E+IQ+N+     LD+
Sbjct: 623 LVERLMGKKPEMRFEYIQQNAQFVEELDV 651


>gi|153085|gb|AAA73951.1| DNA gyrase B subunit [Staphylococcus aureus]
          Length = 640

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 284/591 (48%), Positives = 390/591 (65%), Gaps = 10/591 (1%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           SD     +Y A  IQ+L+GL+AV+KRP MYIG T  E  LH  + E++DN+IDE+L GYA
Sbjct: 6   SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTQRE--LHISV-EIVDNSIDEALAGYA 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V +  D    V+DNGRGIP D+ ++ G  A EVI+T LHAGGKF    YKVSGGLH
Sbjct: 63  NKIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 122

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    +I
Sbjct: 123 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 181

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239
           F+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+ +
Sbjct: 182 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 241

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH  G + ALTR 
Sbjct: 242 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 301

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY   S    ++++   G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+  
Sbjct: 302 LNSYGLSSRY--EEEKIASGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 359

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADCS 
Sbjct: 360 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++L++ EI  +IT
Sbjct: 420 QSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLL FF+R M  LI  G++YI +P
Sbjct: 480 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLIFFYRFMRPLIEAGYVYIAQP 538

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           PLY +T+GK   YV ++  L+      + +           G ++ + L  
Sbjct: 539 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIALYKGLGEMNADQLWE 589



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 7/136 (5%)

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI- 729
           V    +     IF +      I +  +      +  L     K  +      LD + S  
Sbjct: 507 VDGAHIRTLLLIFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSEL 565

Query: 730 ---GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
               +  I++  YKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD  F  LMGD VE
Sbjct: 566 NPTPKWSIAL--YKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVE 623

Query: 787 PRREFIQENSLPSALD 802
            RR+FI++N++ + LD
Sbjct: 624 NRRQFIEDNAVYANLD 639


>gi|308235537|ref|ZP_07666274.1| DNA gyrase subunit B [Gardnerella vaginalis ATCC 14018]
 gi|311114018|ref|YP_003985239.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
           vaginalis ATCC 14019]
 gi|310945512|gb|ADP38216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
           vaginalis ATCC 14019]
          Length = 691

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 255/631 (40%), Positives = 369/631 (58%), Gaps = 26/631 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D++    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 25  DSLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 83

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D +  V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 84  HIEVTILPDNAIKVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 143

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSSD 180
           VG+SVVNALS+ +++ ++R+G  +  ++++     PL        G  TGT VTF P   
Sbjct: 144 VGISVVNALSTRVEIEVRRQGFHWTQTYVDQHPTAPLEKGKPMEEGESTGTSVTFWPDGA 203

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----------------SPEPREITM 223
           IF    ++++TL+ R ++++FLN  ++ISL D R                   + + ++ 
Sbjct: 204 IFETTTYDFETLRSRFQQMAFLNKGLKISLTDLRKPDEAGDEVTGENESTSEEKHQSVSY 263

Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V YL + +K +      I  +     I I  ++AM+W   Y E V  F N 
Sbjct: 264 KYDHGIKDYVDYLVKSRKAVPVEPDVIDFEAEDLEIGISAEIAMQWTVAYSEAVHTFANT 323

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y  +    K+   ++ GDD REG T+V+S+K+  P+F
Sbjct: 324 ISTTEGGTHEEGFRAALTSLVNRYAREKNILKEKDTNLSGDDVREGLTAVVSVKLTTPQF 383

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + + L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 384 EGQTKTKLGNSEAKTFVQRVMTEKLGDWFDAHPSEAKNIIQKAIEASRARIAAKKARENT 443

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR    QAILPLRGKILN
Sbjct: 444 RRKSIFETAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRDPITQAILPLRGKILN 503

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S+ I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 504 TERASIDRMMKSETIESLITAVGGGYGED-FDLSKVRYHKVIIMADADVDGAHIATLNLT 562

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 563 LFFRYMRPMITAGYIYVAMPPLYRLKWSKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEG 622

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
                     ++ +                 
Sbjct: 623 IQRYKGLGEMSYQELWETTMDPEHRILKQIH 653



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L ++ I DA++AD+ 
Sbjct: 604 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQIHIEDAARADET 663

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+  +
Sbjct: 664 FSMLMGDEVEPRRLFIQRNAHDA 686


>gi|257085132|ref|ZP_05579493.1| gram positive topoisomerase IV [Enterococcus faecalis Fly1]
 gi|256993162|gb|EEU80464.1| gram positive topoisomerase IV [Enterococcus faecalis Fly1]
          Length = 663

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/640 (40%), Positives = 370/640 (57%), Gaps = 15/640 (2%)

Query: 25  KKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP 84
           +KRP MYIG TD   GLHH++YE++DNA+DE+L GY + I VT+  D S  V+D+GRG+P
Sbjct: 2   RKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMP 60

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
           T +H   GI   EVI T LHAGGKF Q  YK SGGLHGVG SVVNALS WL++ I R+G 
Sbjct: 61  TGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119

Query: 145 IYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            Y   F + G     L   G      GT VTFLP   IFS  +F+Y+ L  RLRE +FL 
Sbjct: 120 EYMERFEDGGKPIGTLKKIGKTKKRNGTSVTFLPDDTIFSTTNFSYEILAERLRESAFLL 179

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
             V+I+L D+R  EP+E    Y+ GI+ FV+YL+  K  L    +   G+++ I ++LA 
Sbjct: 180 KGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDTLTP-VVYFSGAKEGIEVELAY 238

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           ++NDGY ENVL F NN+  KDGGTH  G+++++T+    Y  K    K+  +++ G D R
Sbjct: 239 QYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKDKNLEGSDFR 298

Query: 324 EGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
           EG  +VLSI++P+   +F  QTK KL +   R+VV++ V + +  +L+E+   ++ +++K
Sbjct: 299 EGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENSEMSQSLIRK 358

Query: 382 VLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            + A   R+AAR+AR+     +K     + L GKL     R+PKK+EL+LVEGDSAGGSA
Sbjct: 359 AIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAGGSA 418

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +G G+G   F I    Y K
Sbjct: 419 KQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSIEDCNYDK 477

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           IIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY +++G   + V      
Sbjct: 478 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVI----- 532

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
            +Y        E+        ++ +      ++     +  +        +  I+ A  +
Sbjct: 533 -EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQA 591

Query: 620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                    +        +   + F  E+       S  +
Sbjct: 592 ERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 631



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 356 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 415

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 416 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 475

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 476 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 535

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 536 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 595

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 596 TTLMGDKVEPRRKWIEQH 613


>gi|77464346|ref|YP_353850.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|77388764|gb|ABA79949.1| DNA topoisomerase II/DNA gyrase, subunit B [Rhodobacter sphaeroides
           2.4.1]
          Length = 663

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 237/576 (41%), Positives = 330/576 (57%), Gaps = 16/576 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++++   Q  +YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ E+LDN++DE++
Sbjct: 13  MANDLLSGQPETYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEAV 71

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116
            G+A  I V L+ D S TV DNGRGIP D H +  G SA EVI+  LHAGGKF+ K+Y+ 
Sbjct: 72  AGHATRIEVELHADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQT 131

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS  L++ + R   ++  SF  GI   P+ + G+A N  GT +TF 
Sbjct: 132 SGGLHGVGASVVNALSDTLRVEVARNRELWVQSFSRGISQGPVKMVGAASNRRGTTITFH 191

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVS 234
           P  +IF    F    L   +R  ++L S V+I           P+E    + GG+  +++
Sbjct: 192 PDPEIFGHLQFKPARLMKMVRSKAYLFSGVEIRWKSAIPDGDTPQEAVFHFPGGLGDYLA 251

Query: 235 YLDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                     +          +      S++ A+ W       +  + N +P  +GGTH 
Sbjct: 252 EQLSGASTYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHE 311

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG  SA+ + I +Y E      +    +  DD   G ++++S+ + +P+F  QTK++L +
Sbjct: 312 SGFWSAILKGIRAYGE--LVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLAT 369

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            E   +VE+ V D    WL  +   A  I+  ++         RR    T+RK       
Sbjct: 370 EEASKLVENAVRDHFDNWLAANTKSAGAILDFLVLR-AEERLRRRQEKETQRKSATKKLR 428

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS      +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNV  A   KM 
Sbjct: 429 LPGKLVDCSATARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMG 488

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++ EI  L  ALGTG+G   F+I++LRY KIIIMTDADVDGAHI +LL+TFFF QM  LI
Sbjct: 489 ANAEINDLCQALGTGMG-TRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLI 547

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
             G LY+  PPLY +T+G    YV D+   E ++  
Sbjct: 548 DRGHLYLACPPLYRLTQGAKRLYVADDVEKELWMAK 583



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            ++      D ++      V    +      F F      I    +      +  L    
Sbjct: 507 RFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPPLYRLTQGA 566

Query: 712 DKIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
            ++ +         +   +G KG I +QR+KGLGEM+A  L +TT+NP TR L+RV I +
Sbjct: 567 KRLYVADDVEKELWMAKGLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATRKLIRVSIDE 626

Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
               +  DL  RLMG + E R ++IQEN+     LD+
Sbjct: 627 DEPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 663


>gi|296120379|ref|YP_003628157.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
 gi|296012719|gb|ADG65958.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
          Length = 635

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 242/637 (37%), Positives = 359/637 (56%), Gaps = 24/637 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A  I++++GL+AV++RPSMYIG  D   GLHH+++E++DN++DE L G A  ITVT
Sbjct: 3   TAYTASDIEVIEGLEAVRRRPSMYIGGVDA-RGLHHLLWEIVDNSVDECLAGEATEITVT 61

Query: 68  LNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ DG SC+VSDNGRGIP DLH +   SA E I+T LH+GGKF++ +Y  SGGLHGVG S
Sbjct: 62  LHKDGESCSVSDNGRGIPVDLHPKTKKSALETILTTLHSGGKFSKNAYARSGGLHGVGSS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  +   I R+G  ++  F  G     L          GT+V F P  +IF+   
Sbjct: 122 VVNALSEEMVATIHRDGFEWQQRFKRGKPTTALKQVRP-FRGRGTDVFFRPDKEIFARTV 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ +T++  L ++S++++ ++I+LID+   E   +               +  +KP+ ++
Sbjct: 181 FSIETIKAHLEDISYIHAGLKITLIDEAKKETVVLHHPDGLQTYLARLMTEGQRKPVHEN 240

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
             +      +  ++   RW++   E++  + N I    GGTH SGL+SA+ + + +Y+E 
Sbjct: 241 LFQFSKDDGSYKVEAVFRWSESTDEHLRSYVNGIRTHAGGTHESGLKSAIGKAVRNYMEV 300

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K    ++  DD REG   +LS+ + +P F  QTKEKL + E+ SVVE  +   L  
Sbjct: 301 H-DIKVKGLTIQNDDIREGIVGLLSVFLAEPMFQGQTKEKLNNPEMSSVVEGQIRPALEN 359

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV-LDIASLPGKLADCSERDPKKS 425
           WL  +   A  IV +++ A+  R A+R A    RRK       SLPGKL DC   +  +S
Sbjct: 360 WLSSNKTTADAIVGRIVLAARARAASREAASEVRRKSPAARRLSLPGKLLDCRSTNADES 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEG SAGG+A  GR    QA+LPLRGK+LN +     K+L +QEI  L+  LGTGI
Sbjct: 420 ELFIVEGLSAGGTAGMGRDSRTQAVLPLRGKVLNTQNMTTAKILDNQEIKDLVETLGTGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G  +FD+++LRY KII+M DAD DG HI TLLLTFFF  MP LI  G L++ +PPLY I 
Sbjct: 480 G-PNFDLHRLRYGKIILMMDADSDGYHISTLLLTFFFGHMPVLITQGKLFLAQPPLYRIQ 538

Query: 546 RGKSLQYVKDEESLEDYLINQSLSE------------------EIELFCDSKGVISKNDL 587
            G  + Y +D+   E++L +   +                   +         ++ + D+
Sbjct: 539 SGNQIFYARDDLHKEEFLDSLPANRNPDVLRFKGLGEMTPSQLKETTLDPKTRILLRIDI 598

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
            N ++     +KL+        K  +EQA      + 
Sbjct: 599 DNQLEADQTFEKLLGKEPAERYKLIMEQANQVDDLDV 635



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           R+KGLGEM  SQL ETTL+P TR LLR+ I +  +AD  F +L+G E   R + I E + 
Sbjct: 569 RFKGLGEMTPSQLKETTLDPKTRILLRIDIDNQLEADQTFEKLLGKEPAERYKLIMEQAN 628

Query: 798 PS-ALDI 803
               LD+
Sbjct: 629 QVDDLDV 635


>gi|119025023|ref|YP_908868.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703]
 gi|154486351|ref|ZP_02027758.1| hypothetical protein BIFADO_00160 [Bifidobacterium adolescentis
           L2-32]
 gi|118764607|dbj|BAF38786.1| DNA gyrase (topoisomerase II) B subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084214|gb|EDN83259.1| hypothetical protein BIFADO_00160 [Bifidobacterium adolescentis
           L2-32]
          Length = 712

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 257/605 (42%), Positives = 364/605 (60%), Gaps = 25/605 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D++    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 47  DSLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 105

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG   V D+GRGIP D    EGIS  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 106 HIEVTILPDGGVRVVDDGRGIPVDEVPGEGISGVETVMTKLHAGGKFGGGGYAVSGGLHG 165

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++I+      L+       G  TGT VTF     
Sbjct: 166 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQKPTARLLKGKPMEEGESTGTSVTFWADGK 225

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLID----------------KRSPEPREITMF 224
           IF    ++++ L++R ++++FLN  ++ISL D                +   + + +T  
Sbjct: 226 IFETTTYDFEILRNRFQQMAFLNKGLKISLTDLREPDQAGDEVSGEESETEDKFQTVTYQ 285

Query: 225 YKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
           Y  GI+ +V YL + +K        I  +    +  IS ++AM+W   Y E V  F N I
Sbjct: 286 YNDGIKDYVDYLVKSRKATPVEPDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTI 345

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y  +    K    ++ GDD REG T+V+S+K+ +P+F 
Sbjct: 346 STTEGGTHEEGFRAALTSLVNRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTNPQFE 405

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ TR
Sbjct: 406 GQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENTR 465

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN 
Sbjct: 466 RKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNT 525

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           ERA  D+M+ S  I +LITA+G G G+D FD+NK+RYHK+IIM DADVDGAHI TL LT 
Sbjct: 526 ERASLDRMMKSDTIESLITAVGGGYGED-FDLNKVRYHKVIIMADADVDGAHIATLNLTL 584

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSK 579
           FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       +  
Sbjct: 585 FFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKAAGRQLPKGEGI 644

Query: 580 GVISK 584
                
Sbjct: 645 QRYKG 649



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++PD R L +V+I DA+ AD+ 
Sbjct: 625 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRILKQVQIEDAAAADET 684

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 685 FSMLMGDEVEPRRLFIQRNARNV 707


>gi|138895303|ref|YP_001125756.1| DNA topoisomerase IV subunit B [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266816|gb|ABO67011.1| Topoisomerase IV subunit B [Geobacillus thermodenitrificans NG80-2]
          Length = 617

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/572 (43%), Positives = 357/572 (62%), Gaps = 16/572 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG TD   GLHH++YE++DN++DE+L GY + I V ++ D S TV D GRG+P  +H 
Sbjct: 1   MYIGSTDS-RGLHHLVYEIVDNSVDEALAGYGNYILVQIHKDNSVTVLDEGRGMPVGMH- 58

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + G    EVI+T LHAGGKF Q  YK SGGLHGVG SVVNALS WL + I R+G IY   
Sbjct: 59  KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQR 118

Query: 150 FIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F N G     L   G   N TGT + F P   IFS   F+Y+TL  RLRE +FL   ++I
Sbjct: 119 FENGGKPVTTLENIG-TTNKTGTIIQFKPDPTIFSTTVFDYETLSERLRESAFLLKGLKI 177

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            L+D+R+         Y+ GIEAFV+YL+  K  L        G ++ I ++ A +++DG
Sbjct: 178 ELVDERTG--MREVFHYENGIEAFVAYLNEEKDVLHPVA-YFAGEQNGIEVEFAFQFHDG 234

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y ENVL F NN+  KDGGTH +G ++A+TR    Y  +    K+  +++ G D REG ++
Sbjct: 235 YSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGTDIREGMSA 294

Query: 329 VLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           ++S+++P+   +F  QTK KL +SE RS V++ V++ L+ +L+E+P  + +++KK + A 
Sbjct: 295 IVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEQLTYFLQENPDVSAMLIKKAIRAY 354

Query: 387 MVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
             R+AAR+AR+   + +K     A L GKL     R+P+K+EL+LVEGDSAGGSAKQGR 
Sbjct: 355 QAREAARKAREEARSGKKRKGKEALLSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRD 414

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R  QA+LPLRGK++N E+A+   +L ++EI T+I A+G G+G D F I  + Y K+IIMT
Sbjct: 415 RRFQAVLPLRGKVINTEKAKLGDILKNEEINTIIHAIGGGVGAD-FSIEDINYDKVIIMT 473

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLE 560
           DAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY I+    + ++++Y   +E L 
Sbjct: 474 DADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYKISKGSGKKETVEYAWTDEQLR 533

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           +          I+ +     + +       ++
Sbjct: 534 EITKKMGRGYTIQRYKGLGEMNADQLWETTMN 565



 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   ++ I       +     N D ++           +    
Sbjct: 427 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSIEDINYDKVIIMTDADTDGAHIQVLL 486

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK---GISMQ 737
             F +      I + ++      +  +     K +        + +  I +K   G ++Q
Sbjct: 487 LTFFYRYMRPLIEAGKVYIALPPLYKISKGSGKKETVEYAWTDEQLREITKKMGRGYTIQ 546

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++A+   + LMGD+VEPRR++I+ +
Sbjct: 547 RYKGLGEMNADQLWETTMNPETRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETH 604


>gi|221640231|ref|YP_002526493.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides KD131]
 gi|332559237|ref|ZP_08413559.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides WS8N]
 gi|221161012|gb|ACM01992.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides KD131]
 gi|332276949|gb|EGJ22264.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides WS8N]
          Length = 651

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 237/576 (41%), Positives = 330/576 (57%), Gaps = 16/576 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++++   Q  +YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ E+LDN++DE++
Sbjct: 1   MANDLLSGQPETYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEAV 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116
            G+A  I V L+ D S TV DNGRGIP D H +  G SA EVI+  LHAGGKF+ K+Y+ 
Sbjct: 60  AGHATRIEVELHADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQT 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS  L++ + R   ++  SF  GI   P+ + G+A N  GT +TF 
Sbjct: 120 SGGLHGVGASVVNALSDTLRVEVARNRELWVQSFSRGISQGPVKMVGAASNRRGTTITFH 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVS 234
           P  +IF    F    L   +R  ++L S V+I           P+E    + GG+  +++
Sbjct: 180 PDPEIFGHLQFKPARLMKMVRSKAYLFSGVEIRWKSAIPDGDTPQEAVFHFPGGLGDYLA 239

Query: 235 YLDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                     +          +      S++ A+ W       +  + N +P  +GGTH 
Sbjct: 240 EQLSGASTYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHE 299

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG  SA+ + I +Y E      +    +  DD   G ++++S+ + +P+F  QTK++L +
Sbjct: 300 SGFWSAILKGIRAYGE--LVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLAT 357

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            E   +VE+ V D    WL  +   A  I+  ++         RR    T+RK       
Sbjct: 358 EEAAKLVENAVRDHFDNWLAANTKSAGAILDFLVLR-AEERLRRRQEKETQRKSATKKLR 416

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS      +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNV  A   KM 
Sbjct: 417 LPGKLVDCSATARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMG 476

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++ EI  L  ALGTG+G   F+I++LRY KIIIMTDADVDGAHI +LL+TFFF QM  LI
Sbjct: 477 ANAEINDLCQALGTGMG-TRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLI 535

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
             G LY+  PPLY +T+G    YV D+   E ++  
Sbjct: 536 DRGHLYLACPPLYRLTQGAKRLYVADDVEKELWMAK 571



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            ++      D ++      V    +      F F      I    +      +  L    
Sbjct: 495 RFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPPLYRLTQGA 554

Query: 712 DKIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
            ++ +         +   +G KG I +QR+KGLGEM+A  L +TT+NP TR L+RV I +
Sbjct: 555 KRLYVADDVEKELWMAKGLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATRKLIRVSIDE 614

Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
               +  DL  RLMG + E R ++IQEN+     LD+
Sbjct: 615 DEPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 651


>gi|71725918|gb|AAZ39077.1| gyrase subunit B [Exiguobacterium undae]
          Length = 513

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 269/516 (52%), Positives = 367/516 (71%), Gaps = 4/516 (0%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIG T    GLHH+++E++DN+IDE+L GY D I VT+    S  V DNGRGIP 
Sbjct: 1   KRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ +KR   +
Sbjct: 60  DIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204
           Y  ++  G+    L V G    +TGT + F P  +IF    +++YD L  RLREL+FLN 
Sbjct: 120 YYQAYHRGVPAADLAVIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            + I + D R+ EP   +  Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A++
Sbjct: 179 GLTIEITDDRADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +NDG+  N+  FTNNIP  +GGTH +G ++ALTR I  Y +K    K+   ++ G+D RE
Sbjct: 239 YNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+++SIK P+P+F  QTK KL +S+ R+  ++  +     ++ E+P  A+ IV+K + 
Sbjct: 299 GMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMM 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR+LTRRKGVL+++SLPGKLADCS RD   SE+++VEGDSAGGSAK GR 
Sbjct: 359 ASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRD 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R  QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMT
Sbjct: 419 RHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMT 477

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           DADVDGAHIRTLLLTFF+R M  L+ +G++YI +PP
Sbjct: 478 DADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513


>gi|163814200|ref|ZP_02205592.1| hypothetical protein COPEUT_00354 [Coprococcus eutactus ATCC 27759]
 gi|158450649|gb|EDP27644.1| hypothetical protein COPEUT_00354 [Coprococcus eutactus ATCC 27759]
          Length = 647

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/607 (40%), Positives = 351/607 (57%), Gaps = 17/607 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +I++LKGL+ V+ RP MYIG+T G SGL+H+I E++DN++DE L GY + I V++
Sbjct: 16  SYSAKNIEVLKGLEPVRLRPGMYIGNT-GRSGLNHLIQELIDNSVDEHLAGYCNNIWVSI 74

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS TVSD+GRG+P DLH++EGI A  V+ T LHAGGKFN  +YK+SGGLHGVG +VV
Sbjct: 75  NEDGSATVSDDGRGVPVDLHEQEGIPAERVVYTVLHAGGKFNSSTYKISGGLHGVGSAVV 134

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSSDIFS 183
           NALS+ L + + R+G +Y  ++  GI         L  T      TGT VT  P   IF 
Sbjct: 135 NALSNKLIVDVARDGYLYHDTYEKGIPTTELVDGMLPKTKLKEKRTGTTVTLYPDDTIFE 194

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F  D ++ R++E ++LN ++ I+  +KR  E   +     GG+ AFV  + +     
Sbjct: 195 TVKFKADAIKQRIKETAYLNPNLTITFQNKRDGEEPIV-FHQPGGLSAFVEDISQGLT-H 252

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               + I G +D I+ D+     D   EN++ FTNNI   +GGTH++G +SA  + I +Y
Sbjct: 253 TSPVVAISGEKDGIAADIVFLMTDDGEENIIGFTNNITNPEGGTHVTGFKSAFAKLINNY 312

Query: 304 VEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
                   K+   ++ G D R G  +++S+K PDP+F  QTK KL +++V   V+  V +
Sbjct: 313 ARNELGVLKEKDSNLTGADIRSGMQAIISVKHPDPQFEGQTKTKLSNTDVSKAVDDIVKE 372

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ + + +    K IV + +  ++ +  A     +   K   +      K       D 
Sbjct: 373 QLTVYFDRNYDVLKDIVDRAV--ALSKRKALEKSKININKFSFEGNGKLAK---QESSDS 427

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+F+VEGDSAGGSAK  R+R+ QAILPLRGKILNVE+    K+L + EI  LI A G
Sbjct: 428 SKCEIFIVEGDSAGGSAKTARNRKYQAILPLRGKILNVEKKPVAKVLENAEIKALINAFG 487

Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            G  Q   + FDI+KL Y KIIIMTDADVDGAHI TLLLTFF+R  P LI  G +YI  P
Sbjct: 488 CGFMQGYGNDFDISKLNYDKIIIMTDADVDGAHIATLLLTFFYRFYPDLISEGHIYIAIP 547

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY +  GK+++Y+  ++ L  Y    +    I+ +     + +       ++   ++ K
Sbjct: 548 PLYRVGEGKNIKYLYSDDELAKYRKTHTSKFTIQRYKGLGEMDADQLYETTMNPETRLLK 607

Query: 600 LIKDFYP 606
            +     
Sbjct: 608 QVSVNSR 614



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN----NSDILVKRIARGVQEQFV 676
           + N E      V   +++   +N       + +    +    N D ++      V    +
Sbjct: 462 ILNVEKKPVAKVLENAEIKALINAFGCGFMQGYGNDFDISKLNYDKIIIMTDADVDGAHI 521

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISM 736
                 F +   Y  + S       +  L  +  G  IK       L           ++
Sbjct: 522 ATLLLTFFYRF-YPDLISEGHIYIAIPPLYRVGEGKNIKYLYSDDELAKYRKTHTSKFTI 580

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEM+A QL+ETT+NP+TR L +V +    +A+ L   LMG EV PRRE+I+ +S
Sbjct: 581 QRYKGLGEMDADQLYETTMNPETRLLKQVSVNSRIEANQLTQTLMGTEVAPRREYIETHS 640

Query: 797 LPSALDI 803
             + LDI
Sbjct: 641 ADAVLDI 647


>gi|71725916|gb|AAZ39076.1| gyrase subunit B [Exiguobacterium sibiricum]
          Length = 513

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 268/516 (51%), Positives = 367/516 (71%), Gaps = 4/516 (0%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIG T    GLHH+++E++DN+IDE+L GY D I VT+    S  V DNGRGIP 
Sbjct: 1   KRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ +KR   +
Sbjct: 60  DIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204
           Y  ++  G+    L + G    +TGT + F P  +IF    +++YD L  RLREL+FLN 
Sbjct: 120 YYQAYHRGVPAADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            + I + D R+ EP   +  Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A++
Sbjct: 179 GLTIEITDDRADEPTTRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +NDG+  N+  FTNNIP  +GGTH +G ++ALTR I  Y +K    K+   ++ G+D RE
Sbjct: 239 YNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+++SIK P+P+F  QTK KL +S+ R+  ++  +     ++ E+P  A+ IV+K + 
Sbjct: 299 GMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMM 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR+LTRRKGVL+++SLPGKLADCS RD   SE+++VEGDSAGGSAK GR 
Sbjct: 359 ASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRD 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R  QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMT
Sbjct: 419 RHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMT 477

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           DADVDGAHIRTLLLTFF+R M  L+ +G++YI +PP
Sbjct: 478 DADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513


>gi|149915418|ref|ZP_01903945.1| DNA topoisomerase IV subunit B [Roseobacter sp. AzwK-3b]
 gi|149810707|gb|EDM70548.1| DNA topoisomerase IV subunit B [Roseobacter sp. AzwK-3b]
          Length = 652

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/655 (36%), Positives = 341/655 (52%), Gaps = 22/655 (3%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D+      +S YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ E+LDN++DE+
Sbjct: 1   MADDLLSATDSSDYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I V L+ D + TV DNGRGIP D H +    SA EVI+  LHAGGKF  K+Y+
Sbjct: 60  VAGHANRIEVELHEDYALTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFGGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ R   +YE  F  G+   P+   G A N  GT +TF
Sbjct: 120 TSGGLHGVGASVVNALSDSMVVQVARNKELYEQRFSRGVPLGPIQKIGQAPNRRGTTITF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFV 233
                IF    F    L + +R  ++L S V+I      +    P E T  + GG+  ++
Sbjct: 180 HADEQIFGSHRFKPARLFNSIRSKAYLFSGVEIRWKSAITDGDTPTEATFHFPGGLSDYL 239

Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                        P        +       ++ A+ W      ++  + N +P  +GGTH
Sbjct: 240 RETMNGASTYADQPFAGTVDFQERFGMPGKVEWAINWTPSRDGSLQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  +A+ + I  Y E      +   ++  +D   G  +++S  + +P F  QTK++L 
Sbjct: 300 VAGFWAAILKGIKGYGELVN--NRKATNITREDLMAGGCALVSCFIREPEFVGQTKDRLA 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E + +VE+ V D    WL      A  I+  ++         RR    T+RK      
Sbjct: 358 TTEAQRLVENAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETQRKTATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DCS      +ELF+VEGDSAGGSAK GR R+ QA+LPLRGKILNV  A   K+
Sbjct: 417 RLPGKLVDCSSNVRDGTELFIVEGDSAGGSAKMGRDRKTQALLPLRGKILNVLGAASSKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+QEI  L  ALG G+G   F+I+ LRY KIIIMTDADVDGAHI +LL+TFFF QM  +
Sbjct: 477 GSNQEIADLTQALGVGLGSK-FNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPM 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPLY +T+G    Y  D+   + ++      +           G +   D
Sbjct: 536 IDAGHLYLACPPLYRLTQGAKRVYCLDQAERDAWMKKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+           I   I +  P      +E+ +             N     +L
Sbjct: 596 LKETTMDPKTRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYISENARFVEEL 650



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREF 791
           I + R+KGLGEM+A  L ETT++P TR L+RV I +    +  DL  RLMG + E R ++
Sbjct: 580 IDVSRFKGLGEMDAKDLKETTMDPKTRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQY 639

Query: 792 IQENSLPS-ALDI 803
           I EN+     LD+
Sbjct: 640 ISENARFVEELDV 652


>gi|18147155|dbj|BAB83058.1| DNA gyrase subunit B [Alcanivorax sp. I4]
          Length = 467

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 286/470 (60%), Positives = 362/470 (77%), Gaps = 4/470 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  +GLHHM++EV+DN+IDE+L G+   I V ++ D S ++ DNGRGIP D+H+EEG+
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDEALAGFCSEIRVVIHPDESVSIQDNGRGIPVDIHEEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVI+T LHAGGKF+  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G
Sbjct: 61  SAAEVILTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           + D PL V G     +GT V F PSS+ FS   F+YD L  RLRELSFLNS V+I L D+
Sbjct: 121 VPDKPLEVVG-TTESSGTSVHFRPSSETFSNIKFHYDILAKRLRELSFLNSGVRIHLKDE 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHEN 272
           RS E       Y+GG+ AFVSYL+ +K PL Q          D IS+++AM+WND Y EN
Sbjct: 180 RSGEE--EVFEYEGGLSAFVSYLNVNKTPLNQVFHFQYDREEDGISVEVAMQWNDSYQEN 237

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           + CFTNNIPQ+DGGTHL+G R ALTR + +Y++K    KK+K +  GDD REG T+V+S+
Sbjct: 238 IFCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISV 297

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+  VE  + +    +L E+P EAK I +K++DA+  RDAA
Sbjct: 298 KVPDPKFSSQTKDKLVSSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAA 357

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG LDIA LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILP
Sbjct: 358 RKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILP 417

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L+GKILNVE+ARFDKMLSSQE+GTLITALG GIG+D ++I+KLRYH+III
Sbjct: 418 LKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIDKLRYHRIII 467


>gi|68138694|gb|AAY86002.1| GyrB [Burkholderia cenocepacia]
          Length = 646

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 289/647 (44%), Positives = 406/647 (62%), Gaps = 20/647 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNP 158
           Q SYKVSGGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P
Sbjct: 1   QNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           ++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS + 
Sbjct: 61  MLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE 119

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTN
Sbjct: 120 --DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTN 177

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+
Sbjct: 178 NIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPK 237

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++
Sbjct: 238 FSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREM 297

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+L
Sbjct: 298 TRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVL 357

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NVE+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLL
Sbjct: 358 NVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLL 417

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++
Sbjct: 418 TFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGEN 477

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
              IS + L       L    +I+     +D   +E AV+ GV    S++    + A  L
Sbjct: 478 AAAISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEASTEASAKAL 536

Query: 639 ANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
              L+  A K+E      +        + V+R   G     V++     +   +     +
Sbjct: 537 HAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTA 596

Query: 695 NRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 597 NTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 643


>gi|171920400|ref|ZP_02931723.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902839|gb|EDT49128.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 642

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 241/593 (40%), Positives = 364/593 (61%), Gaps = 15/593 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YD ++I+IL+GL+AV+KRP MYIG T   +GLHH+I+E++DN+IDE +   
Sbjct: 1   MANK-----YDGNAIKILEGLEAVRKRPGMYIGSTSS-TGLHHLIWEIVDNSIDEVMNAN 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S +V D+GRGIP D++ +  IS  E ++T LHAGGKF++ +YK +GGL
Sbjct: 55  AKNINVILHEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDESAYKTAGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSSWL   + R+  IY+  FIN G +D  L V G+    TGT + FLP  
Sbjct: 115 HGVGSSVVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTK-KTGTLIHFLPDP 173

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    FN + ++ RL E +FL   ++I   DK + +          G+  F+ +++  
Sbjct: 174 LIFKNLVFNPNIIKERLHESTFLIKDLKIIFEDKINKKK--YEFINNQGLIDFIKFINEA 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KK      I  + + + I +++A +++D  +E ++ F N++   +GG H +  ++ALT  
Sbjct: 232 KKT-FSDVIYFRSNINKIEVEIAFQYSDQNNEIMVSFANSVKTNEGGVHENAFKNALTSV 290

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           + +Y  K    K+  +++ GDD REG +SV+S+++P+    +  QTK KL + E    V+
Sbjct: 291 VNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416
             + D  S WLEE+  +A  +V + + A   + AA+RAR+ T++ K + +   + GKL  
Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              +DP  +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR   +L ++EI +
Sbjct: 411 AQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M  LI NG +YI
Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             PPLY +T   + ++    + +E   + +             G ++ + L  
Sbjct: 530 ALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750
           I +  I      +  L    +K        + LD +    +K   +QRYKGLGEMNA QL
Sbjct: 522 IENGNIYIALPPLYKLTNKNNKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +ETT++P+ R LL++ I D  QA+   + LMG++V  R+++I  N
Sbjct: 581 FETTMDPNNRLLLKININDILQAERQINTLMGNDVSIRKQWIDNN 625


>gi|291455697|ref|ZP_06595087.1| DNA gyrase, B subunit [Bifidobacterium breve DSM 20213]
 gi|291382625|gb|EFE90143.1| DNA gyrase, B subunit [Bifidobacterium breve DSM 20213]
          Length = 712

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 256/653 (39%), Positives = 371/653 (56%), Gaps = 28/653 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 46  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 105 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++++     PL      +    TGT VTF     
Sbjct: 165 VGISVVNALSTHVDIEVRRQGFHWTQTYVDQHPVAPLKQGEPMAEDESTGTSVTFWADPK 224

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLID-----------------KRSPEPREITM 223
           IF    ++++TL+ R ++++FLN  +++SL D                 +   + + +T 
Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKLSLTDERVTDQAGDEVAGDAEGEPGEKHQTVTY 284

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKAILKDKDENLSGDDVREGLTAVISVKLTNPQF 404

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 464

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 465 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 584 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 643

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                     ++ +                     + A     F+     E+ 
Sbjct: 644 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 694



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V I DA+ AD+ 
Sbjct: 625 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 684

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 685 FSMLMGDEVEPRRLFIQRNAKNV 707


>gi|126463188|ref|YP_001044302.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|126104852|gb|ABN77530.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 663

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 237/576 (41%), Positives = 330/576 (57%), Gaps = 16/576 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++++   Q  +YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ E+LDN++DE++
Sbjct: 13  MANDLLSGQPETYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEAV 71

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116
            G+A  I V L+ D S TV DNGRGIP D H +  G SA EVI+  LHAGGKF+ K+Y+ 
Sbjct: 72  AGHATRIEVELHADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQT 131

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS  L++ + R   ++  SF  GI   P+ + G+A N  GT +TF 
Sbjct: 132 SGGLHGVGASVVNALSDTLRVEVARNRELWMQSFSRGISQGPVKMVGAASNRRGTTITFH 191

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVS 234
           P  +IF    F    L   +R  ++L S V+I           P+E    + GG+  +++
Sbjct: 192 PDPEIFGHLQFKPARLMKMVRSKAYLFSGVEIRWKSAIPDGDTPQEAVFHFPGGLGDYLA 251

Query: 235 YLDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                     +          +      S++ A+ W       +  + N +P  +GGTH 
Sbjct: 252 EQLSGASTYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHE 311

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG  SA+ + I +Y E      +    +  DD   G ++++S+ + +P+F  QTK++L +
Sbjct: 312 SGFWSAILKGIRAYGE--LVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLAT 369

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            E   +VE+ V D    WL  +   A  I+  ++         RR    T+RK       
Sbjct: 370 EEAAKLVENAVRDHFDNWLAANTKSAGAILDFLVLR-AEERLRRRQEKETQRKSATKKLR 428

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS      +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNV  A   KM 
Sbjct: 429 LPGKLVDCSATARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMG 488

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++ EI  L  ALGTG+G   F+I++LRY KIIIMTDADVDGAHI +LL+TFFF QM  LI
Sbjct: 489 ANAEINDLCQALGTGMG-TRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLI 547

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
             G LY+  PPLY +T+G    YV D+   E ++  
Sbjct: 548 DRGHLYLACPPLYRLTQGAKRLYVADDVEKELWMAK 583



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            ++      D ++      V    +      F F      I    +      +  L    
Sbjct: 507 RFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPPLYRLTQGA 566

Query: 712 DKIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
            ++ +         +   +G KG I +QR+KGLGEM+A  L +TT+NP TR L+RV I +
Sbjct: 567 KRLYVADDVEKELWMAKGLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATRKLIRVSIDE 626

Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
               +  DL  RLMG + E R ++IQEN+     LD+
Sbjct: 627 DEPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 663


>gi|224283956|ref|ZP_03647278.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|310286525|ref|YP_003937783.1| gyrB1 DNA gyrase subunit B [Bifidobacterium bifidum S17]
 gi|311063464|ref|YP_003970189.1| gyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
 gi|309250461|gb|ADO52209.1| gyrB1 DNA gyrase subunit B [Bifidobacterium bifidum S17]
 gi|310865783|gb|ADP35152.1| gyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
          Length = 720

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 258/630 (40%), Positives = 369/630 (58%), Gaps = 25/630 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D +    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 55  DTLSPDHYDASDLKVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAT 113

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 114 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 173

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  +++N      L      +    TGT VTF P + 
Sbjct: 174 VGISVVNALSTRVDIEVRRQGFHWTQTYVNQHPTARLAKGAPMAEDESTGTSVTFWPDAA 233

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------SPEPREITMF 224
           IF    ++++TL+ R ++++FLN  ++ISL D R                 P+ + +T  
Sbjct: 234 IFESTVYDFETLRSRFQQMAFLNKGLKISLTDLREPDLAGDEVAGDDDSTEPKHQSVTYQ 293

Query: 225 YKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
           Y  GI+ +VSYL + +K     +  I  +    +  IS ++AM+W   Y E V  F N I
Sbjct: 294 YMNGIKDYVSYLVKSRKATPVEEDVIDFEAEDLKIGISAEVAMQWTTAYSEAVHTFANTI 353

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y       K+   ++ GDD REG T+V+S+K+  P+F 
Sbjct: 354 STTEGGTHEEGFRAALTSLVNRYARDKNILKEKDDNLSGDDVREGLTAVVSVKLTTPQFE 413

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ TR
Sbjct: 414 GQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARIAAKKARENTR 473

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+ E QAILPLRGKILN 
Sbjct: 474 RKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPETQAILPLRGKILNT 533

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           ERA  D+M+ S  I +LITA+G G G++ FD++K+RYHK+IIM DADVDGAHI TL LT 
Sbjct: 534 ERASIDRMMKSDTIESLITAVGGGYGEE-FDVSKVRYHKVIIMADADVDGAHIATLNLTL 592

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FFR M  +I  G++Y+  PPLY +   +    YV  +   ++ L     +       +  
Sbjct: 593 FFRYMRPMITAGYVYVAMPPLYRLKWTRGDHDYVYTDRERDEKLAQGKAAGRQLPKGEGI 652

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
                     + +                 
Sbjct: 653 QRYKGLGEMTYQELWETTMDPEHRILKQIH 682



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 50/68 (73%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG  +QRYKGLGEM   +LWETT++P+ R L ++ I DA+ AD+ FS LMGD+VEPRR F
Sbjct: 648 KGEGIQRYKGLGEMTYQELWETTMDPEHRILKQIHIEDAAAADETFSMLMGDDVEPRRLF 707

Query: 792 IQENSLPS 799
           IQ N+   
Sbjct: 708 IQRNAKDV 715


>gi|253681965|ref|ZP_04862762.1| DNA gyrase subunit B [Clostridium botulinum D str. 1873]
 gi|253561677|gb|EES91129.1| DNA gyrase subunit B [Clostridium botulinum D str. 1873]
          Length = 652

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/609 (38%), Positives = 354/609 (58%), Gaps = 23/609 (3%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS  +N   +SYD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   
Sbjct: 1   MSLVENKNKNSYDVTDLTSLEKLEPVRVRPGMYIGST-GTKGLHHCIWEILDNSIDEIAN 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D +T+ LN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKFN K+YK SG
Sbjct: 60  GYGDKVTLILNKDKSVTIIDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNKNYKTSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGN 167
           GLHGVG +VVNALS W+++ + ++G+IY+  F             G    PL + G   N
Sbjct: 120 GLHGVGAAVVNALSEWVEVEVYQKGHIYKQRFEYAEDKSLNKKMPGTPITPLEIIGDT-N 178

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           +TGT++TF P  ++FS  DF ++ +  RL+EL+F N  + + + D+R  +  E     + 
Sbjct: 179 NTGTKITFKPDKEVFSTTDFKFEVIDERLQELAFQNKGITLVIKDERKEDIIEKEYHSER 238

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQK 283
           G+  F+ YL+  K P+ + P+  +G R+  SI    ++ +++ D   EN+  + NNIP  
Sbjct: 239 GLLDFIEYLNESKTPIHKEPLIFEGEREVNSIKVYSEVCIQFTDSSTENIASYVNNIPTT 298

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           + GTH +G ++ +TR    +  K    K+  R   GDD REG T++L +K+ +P F  QT
Sbjct: 299 ESGTHETGFKTGMTRAFKEWARKLNIVKEKDRGFEGDDLREGMTAILRVKISNPIFEGQT 358

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL ++E  +V+       +  W+E++   A  I+   + A+  RD  ++  D  ++K 
Sbjct: 359 KTKLGNNEAYTVMNELAYTKIGEWIEDNKEIATQIINNAVSAAARRDKIKKINDAEKKKI 418

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
               A L GK++ C+ + P   E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ 
Sbjct: 419 GKGAAPLAGKVSICTLKKPDVCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQ 478

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R + +L+S+E+    TA+GTG+  ++++ + L+Y+KIII++DADVDG HIRTL +T+ +R
Sbjct: 479 RLENVLASEELKLFNTAIGTGV-LENYNEDDLKYNKIIILSDADVDGYHIRTLWITYIYR 537

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKG 580
            M SLI NG LYI  PPLY + +      VK     +D       +     +       G
Sbjct: 538 YMKSLITNGHLYIALPPLYKVYKNSKNGEVKRYAYSDDELEVAKREIGKGALIQRYKGLG 597

Query: 581 VISKNDLRN 589
            ++ + L +
Sbjct: 598 EMNPDQLWD 606



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 51/65 (78%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG  +QRYKGLGEMN  QLW+TTLNP+TR+L ++ I DA++A+ + S LMGD VEPRR +
Sbjct: 586 KGALIQRYKGLGEMNPDQLWDTTLNPETRTLQQITIEDAAKAEKMISLLMGDVVEPRRNY 645

Query: 792 IQENS 796
           + + +
Sbjct: 646 MYKYA 650


>gi|26554100|ref|NP_758034.1| DNA topoisomerase IV subunit B [Mycoplasma penetrans HF-2]
 gi|26454108|dbj|BAC44438.1| DNA topoisomerase IV subunit B [Mycoplasma penetrans HF-2]
          Length = 631

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/585 (41%), Positives = 351/585 (60%), Gaps = 8/585 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SY    I++L+GLD V+KRP MYIG TD + GLHH+I+E+LDNA+DE + G  D I +T
Sbjct: 2   NSYKESDIKVLEGLDPVRKRPGMYIGSTD-QRGLHHLIWEILDNAVDEVMAGVCDTIKMT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V DNGRGIPT +H +  +S  + + T LHAGGKF+  +YK+SGGLHGVG SV
Sbjct: 61  LHRDGSFSVEDNGRGIPTGIHPKTKMSTVDTVFTTLHAGGKFSDSAYKMSGGLHGVGSSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSS+L + +KR+G IYE  +++G           + N TGT V FLP + IF    F
Sbjct: 121 VNALSSYLTVTVKRDGKIYESQYVDGGKIKQKSHIIGSTNRTGTTVRFLPDASIFKNIAF 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +   +  R++E SFL   ++I   ++ + +    T   + GI  FVS++  ++K  +   
Sbjct: 181 SPSIIFERVQETSFLFKGLKIIFENEYTRKV--DTFLAQNGISEFVSFISSNQKT-ISEV 237

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I I+G   +I  ++A ++ND   E  + F N++  K+GGTH +G ++ALT  +  Y  K 
Sbjct: 238 IYIEGKEQDIEAEIAFQYNDSNSETFVSFANSVKTKEGGTHETGFKTALTETLNDYARKW 297

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              K  +++  G D REG   V+S+++P+    +  QTK KL + E  SVV++ V    +
Sbjct: 298 KLLKDKEKNFEGSDFREGLVCVISVRIPERLISYEGQTKNKLFTQEAYSVVKNIVKTKFT 357

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDPKK 424
            WLEE+  +AK I++K   +   R AA++AR+  ++ KG      L GKL  C  +D   
Sbjct: 358 YWLEENKKDAKTIIEKAYLSREARIAAKKAREEVKQLKGQKKEKILSGKLTPCQSKDKTI 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAK GR +  QAILPL+GK++NVE+A    +L ++EI T I +   G
Sbjct: 418 TELFLVEGDSAGGSAKLGRDKRYQAILPLKGKVINVEKAMLKDLLKNEEIST-IISSIGG 476

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
                F +  ++Y KIIIMTDAD DGAHIR LLLTFF+R M  LI +G +YI  PPLY  
Sbjct: 477 SIGSDFCLPDVKYSKIIIMTDADTDGAHIRILLLTFFYRYMKELIESGRVYIALPPLYKF 536

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           T  K+ +     E  E   + +             G ++ + L +
Sbjct: 537 TNTKNKKEFYVWEDYELEELKKDNPNYEIQRYKGLGEMNADQLWD 581



 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK---GIS 735
            + +F  +Y +    S R+      +       +K +        D      +K      
Sbjct: 508 LLLTFFYRYMKELIESGRVYIALPPLYKFTNTKNKKEFYVWE---DYELEELKKDNPNYE 564

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLW+TT++P+TR L++V I DA+  +   S LMGD+   R+E+I +N
Sbjct: 565 IQRYKGLGEMNADQLWDTTMDPETRQLIQVSIEDAALTERRVSILMGDDSSKRKEWITDN 624


>gi|313141108|ref|ZP_07803301.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|313133618|gb|EFR51235.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
          Length = 694

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 258/630 (40%), Positives = 369/630 (58%), Gaps = 25/630 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D +    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 29  DTLSPDHYDASDLKVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAT 87

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 88  HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 147

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  +++N      L      +    TGT VTF P + 
Sbjct: 148 VGISVVNALSTRVDIEVRRQGFHWTQTYVNQHPTARLAKGAPMAEDESTGTSVTFWPDAA 207

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------SPEPREITMF 224
           IF    ++++TL+ R ++++FLN  ++ISL D R                 P+ + +T  
Sbjct: 208 IFESTVYDFETLRSRFQQMAFLNKGLKISLTDLREPDLAGDEVAGDDDSTEPKHQSVTYQ 267

Query: 225 YKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
           Y  GI+ +VSYL + +K     +  I  +    +  IS ++AM+W   Y E V  F N I
Sbjct: 268 YMNGIKDYVSYLVKSRKATPVEEDVIDFEAEDLKIGISAEVAMQWTTAYSEAVHTFANTI 327

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y       K+   ++ GDD REG T+V+S+K+  P+F 
Sbjct: 328 STTEGGTHEEGFRAALTSLVNRYARDKNILKEKDDNLSGDDVREGLTAVVSVKLTTPQFE 387

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ TR
Sbjct: 388 GQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARIAAKKARENTR 447

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+ E QAILPLRGKILN 
Sbjct: 448 RKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPETQAILPLRGKILNT 507

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           ERA  D+M+ S  I +LITA+G G G++ FD++K+RYHK+IIM DADVDGAHI TL LT 
Sbjct: 508 ERASIDRMMKSDTIESLITAVGGGYGEE-FDVSKVRYHKVIIMADADVDGAHIATLNLTL 566

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FFR M  +I  G++Y+  PPLY +   +    YV  +   ++ L     +       +  
Sbjct: 567 FFRYMRPMITAGYVYVAMPPLYRLKWTRGDHDYVYTDRERDEKLAQGKAAGRQLPKGEGI 626

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
                     + +                 
Sbjct: 627 QRYKGLGEMTYQELWETTMDPEHRILKQIH 656



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 50/68 (73%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           KG  +QRYKGLGEM   +LWETT++P+ R L ++ I DA+ AD+ FS LMGD+VEPRR F
Sbjct: 622 KGEGIQRYKGLGEMTYQELWETTMDPEHRILKQIHIEDAAAADETFSMLMGDDVEPRRLF 681

Query: 792 IQENSLPS 799
           IQ N+   
Sbjct: 682 IQRNAKDV 689


>gi|218440010|ref|YP_002378339.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172738|gb|ACK71471.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424]
          Length = 1191

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 260/502 (51%), Positives = 354/502 (70%), Gaps = 3/502 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y A+ IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I V
Sbjct: 2   TSNYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            +N DGS TV+D+GRGIPTD H   G SA E +MT LHAGGKF    YKVSGGLHGVGVS
Sbjct: 61  DINSDGSVTVTDDGRGIPTDTHPTTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS W+ + + R+ N++   +  G+    L     + + TGT V+FLP   IF+   
Sbjct: 121 VVNALSEWVNVTVWRDKNVFTQRYERGVPVTALESQPDSNHSTGTSVSFLPDVQIFTGGI 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+Y+TL  RLREL++LN+  +I+  D R  +PR  +  Y+GGI+ +V+Y+ R K+PL +
Sbjct: 181 EFDYNTLAGRLRELAYLNAGARITFTDNRGEQPRVESYCYEGGIKEYVAYMCREKQPLHE 240

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             I +QG R+ I I++A++W  D Y++N+L F NNI   DGGTHL GL++ LTR I +  
Sbjct: 241 EIIYVQGERNGIYIEVALQWYIDTYNDNLLGFANNIRTIDGGTHLEGLKAVLTRTINNVA 300

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K    K ++ ++ G++ REG T V+S+K+P+P F  QTK KL ++EVR +V+S V + L
Sbjct: 301 RKRNKIKDNEPNLAGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVL 360

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +LE HP  A  I++K + A    +AARRAR+L RRK VL+ + LPGKLADCSERDP +
Sbjct: 361 GEYLEFHPQIADAIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSERDPAR 420

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+F+VEGDSAGGSAKQGR R +QAILPLRGKILN+E+    K+  + EI +LITALG G
Sbjct: 421 SEIFIVEGDSAGGSAKQGRDRRSQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLG 480

Query: 485 IGQDSFDINKLRYHKIIIMTDA 506
           I  + F+ ++LRYH+IIIM+ A
Sbjct: 481 IKGEEFEASQLRYHRIIIMSVA 502



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 8/139 (5%)

Query: 671  VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-- 728
            V    +      F +  +   +    I      +  +    +         L   I    
Sbjct: 1055 VDGAHIRTLLLTFFYRYQRAIVDQGYIYIACPPLYKVERGRNHRYCYNERELQQYINELP 1114

Query: 729  -IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
                   S+QR+KGLGEM   QLW+TT+NP+TR + +V+I DA++A++LF+ LMGD V P
Sbjct: 1115 PNA--NYSIQRFKGLGEMMPQQLWDTTMNPETRMIKQVEIEDAAKAEELFTILMGDRVSP 1172

Query: 788  RREFIQENS--LPSA-LDI 803
            RR+FI+ +   L    LDI
Sbjct: 1173 RRDFIETHGPRLNLNDLDI 1191



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 504  TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
            TDADVDGAHIRTLLLTFF+R   +++  G++YI  PPLY + RG++ +Y  +E  L+ Y+
Sbjct: 1051 TDADVDGAHIRTLLLTFFYRYQRAIVDQGYIYIACPPLYKVERGRNHRYCYNERELQQYI 1110

Query: 564  INQSLSEE-IELFCDSKGVISKNDLRN 589
                 +           G +    L +
Sbjct: 1111 NELPPNANYSIQRFKGLGEMMPQQLWD 1137


>gi|1405461|emb|CAA97606.1| GrlB [Bacillus subtilis subsp. subtilis str. 168]
          Length = 627

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 252/632 (39%), Positives = 371/632 (58%), Gaps = 22/632 (3%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG TD   GLHH++YE++DN++DE L G+ D I V ++ D S +V D GRG+PT +H 
Sbjct: 1   MYIGSTDA-RGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHKDNSISVQDRGRGMPTGMH- 58

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + G    EVI+T LHAGGKF Q  YK SGGLHGVG SVVNALS WL + I+R+G +Y+  
Sbjct: 59  KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGFVYQQR 118

Query: 150 FIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F N G     L   G     TGT   F P   +FS   +N++TL  RLRE +FL   ++I
Sbjct: 119 FENGGKPVTSLEKIGKTK-KTGTLTHFKPDPTMFSTTTYNFETLSERLRESAFLLKGLKI 177

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            LID+R+ +      +Y+ GIEAFV+     +K ++   +  +G   +I +D A ++NDG
Sbjct: 178 ELIDERNDQR--EVFYYENGIEAFVA-YLNEEKDVLSEVVSFEGEHHSIEVDFAFQFNDG 234

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y EN+L F NN+  KDGGTH SG ++A+TR    Y  K    K+  +++ G D REG ++
Sbjct: 235 YSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSA 294

Query: 329 VLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           ++S+++P+   +F  QTK KL +SE RS V++ V++ L+ +LEE+   A ++VKK + AS
Sbjct: 295 IISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTATLLVKKAIKAS 354

Query: 387 MVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
             R+AAR+AR+   + +K     A+L GKL     R+P K+EL+LVEGDSAGGSAKQGR 
Sbjct: 355 QAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGSAKQGRD 414

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R  QA+LPLRGK++N E+A+   +  ++EI T+I A+G G+G D F I+ + Y KIIIMT
Sbjct: 415 RRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGAD-FSIDDINYDKIIIMT 473

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DAD DGAHI+ LLLTFF+R M  LI +G ++I  PPLY +++G   + +       +Y  
Sbjct: 474 DADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEII------EYAW 527

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV----ISG 620
           +     ++         I +      ++     +  +        +  I+ A        
Sbjct: 528 SDEEMGDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVT 587

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +  +     +   +A  L+  +   E  
Sbjct: 588 TLMGDKVEPRRKWIEKNVAFGLDEESNILENE 619



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 5/257 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +    +    +   E     +    E  L        S+N  +N +           
Sbjct: 349 KAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGS 408

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +      +   V N E  +  ++    ++   ++ I       +     N D 
Sbjct: 409 AKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDINYDK 468

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TG 718
           ++           +      F +      I   ++      +  +     K +I      
Sbjct: 469 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWS 528

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              + D +  +G KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++ +   +
Sbjct: 529 DEEMGDVLKKVG-KGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVT 587

Query: 779 RLMGDEVEPRREFIQEN 795
            LMGD+VEPRR++I++N
Sbjct: 588 TLMGDKVEPRRKWIEKN 604


>gi|160892781|ref|ZP_02073571.1| hypothetical protein CLOL250_00312 [Clostridium sp. L2-50]
 gi|156865822|gb|EDO59253.1| hypothetical protein CLOL250_00312 [Clostridium sp. L2-50]
          Length = 634

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/601 (41%), Positives = 348/601 (57%), Gaps = 22/601 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A +I++LKGL+ V+ RP MYIG+T G SGL+H+I E++DN++DE L GY   I V++
Sbjct: 2   SYSAKNIEVLKGLEPVRLRPGMYIGNT-GRSGLNHLIQELIDNSVDEHLAGYCKNIYVSI 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS TVSD+GRG+P D+H+ EGI A  V+ T LHAGGKFN  +YK+SGGLHGVG +VV
Sbjct: 61  NEDGSATVSDDGRGVPVDIHETEGIPAERVVYTVLHAGGKFNSSTYKISGGLHGVGSAVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS------AGNDTGTEVTFLPSSDIF 182
           NALS  L + + R+G +Y  S+  G+    L   G+          TGT+VT  P   IF
Sbjct: 121 NALSKKLLVEVARDGYLYTDSYEYGVPVTELTPEGNLPRTRLKEKRTGTKVTLYPDDTIF 180

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F  D +  R++E ++LN  + I+  +KR  +   +     GG+ AFV  +      
Sbjct: 181 ETVKFKADAIMQRIKETAYLNPELTITFHNKRDGKE-PVVFHQPGGLSAFVEDISEGLT- 238

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                I I G ++NI+ D+     +   EN++ FTNNI   +GGTH++G +S   + I S
Sbjct: 239 HTSPIIAISGEKENITADIVFVMTEDGEENIIGFTNNITNPEGGTHVTGFKSGFAKLINS 298

Query: 303 YVEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           Y        K+   ++ G D R G  +++S+K PDP+F  QTK KL +++V   V+  V 
Sbjct: 299 YARNELGLLKEKDANLSGADIRSGMQAIISVKHPDPQFEGQTKTKLSNTDVTKAVDDIVK 358

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLADCSE 419
           + L+ + + +    K I  + +  S         + L + K  L+  S    GKLA    
Sbjct: 359 EQLTVYFDRNYDVLKDICDRAVSLSK-------KKALEKSKINLNKFSFEGNGKLAKQES 411

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            D  K E+F+VEGDSAGGSAK  R+R+ QAILPLRGKILNVE+    K+L + EI  LI 
Sbjct: 412 NDSSKCEIFIVEGDSAGGSAKTARNRKYQAILPLRGKILNVEKKTVAKVLENAEIKALIN 471

Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           A G G  Q   + FDINKL Y KIIIMTDADVDGAHI TLLLTFF+R  P LI+ G +YI
Sbjct: 472 AFGCGFMQGYGNDFDINKLNYDKIIIMTDADVDGAHIATLLLTFFYRFYPDLINEGHIYI 531

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
             PPLY +  GK +QY+  +E L  Y    +    I+ +     + +       ++   +
Sbjct: 532 AIPPLYRVGEGKHMQYLYSDEELNRYRKKHTGKFTIQRYKGLGEMDADQLYETTMNPESR 591

Query: 597 I 597
           +
Sbjct: 592 V 592



 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 120/327 (36%), Gaps = 31/327 (9%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL----------------YGITRGK 548
           DA++ GA IR+ +      + P     G                         Y      
Sbjct: 311 DANLSGADIRSGMQAIISVKHPDPQFEGQTKTKLSNTDVTKAVDDIVKEQLTVYFDRNYD 370

Query: 549 SLQYVKDEE---SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            L+ + D     S +  L    ++     F  +  +  +    +   +   ++       
Sbjct: 371 VLKDICDRAVSLSKKKALEKSKINLNKFSFEGNGKLAKQESNDSSKCEIFIVEGDSAGGS 430

Query: 606 PNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN---- 658
               +    QA++     + N E      V   +++   +N       + +    +    
Sbjct: 431 AKTARNRKYQAILPLRGKILNVEKKTVAKVLENAEIKALINAFGCGFMQGYGNDFDINKL 490

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
           N D ++      V    +      F +   Y  + +       +  L  +  G  ++   
Sbjct: 491 NYDKIIIMTDADVDGAHIATLLLTFFYRF-YPDLINEGHIYIAIPPLYRVGEGKHMQYLY 549

Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
               L+       G+   ++QRYKGLGEM+A QL+ETT+NP++R L +V I    +A+ L
Sbjct: 550 SDEELNRYRKKHTGK--FTIQRYKGLGEMDADQLYETTMNPESRVLKQVSINSIVEANKL 607

Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803
              LMG EV PRRE+I+ +S  + LDI
Sbjct: 608 TQTLMGTEVAPRREYIETHSTDAVLDI 634


>gi|66009716|gb|AAY42699.1| GyrB [Burkholderia anthina]
          Length = 643

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 288/647 (44%), Positives = 404/647 (62%), Gaps = 20/647 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNP 158
           Q SYKVSGGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P
Sbjct: 1   QNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQERVLEMVDGVEVSP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           ++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS + 
Sbjct: 61  MLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE 119

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 + GG++ FV ++++ K  L  +     G +D + +++AM+WND Y+ENVLCFTN
Sbjct: 120 --DDFAFAGGVKGFVEFINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTN 177

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+
Sbjct: 178 NIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPK 237

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++
Sbjct: 238 FSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREM 297

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+L
Sbjct: 298 TRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVL 357

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NVE+AR+DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGAHIRTLLL
Sbjct: 358 NVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLL 417

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++
Sbjct: 418 TFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGEN 477

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
              IS + L       L    +I+     +D   +E AV+ GV    S +    + A  L
Sbjct: 478 AAAISGDALGELARSYLLSKSVIERLSRLYDPAALE-AVMDGVVIDLSTEASTEASAKAL 536

Query: 639 ANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
              L+  A K+E      +        + V+R   G     V++     +   +     +
Sbjct: 537 HAALHDEALKNEVRVVPAYDAVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVTTA 596

Query: 695 NRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 597 NTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 643


>gi|186701799|ref|ZP_02971474.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186701080|gb|EDU19362.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 642

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 241/593 (40%), Positives = 364/593 (61%), Gaps = 15/593 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YD ++I+IL+GL+AV+KRP MYIG T   +GLHH+I+E++DN+IDE +   
Sbjct: 1   MANK-----YDGNAIKILEGLEAVRKRPGMYIGSTSS-TGLHHLIWEIVDNSIDEVMNAN 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S +V D+GRGIP D++ +  IS  E ++T LHAGGKF++ +YK +GGL
Sbjct: 55  AKNINVILHEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDESAYKTAGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSSWL   + R+  IY+  FIN G +D  L V G+    TGT + FLP  
Sbjct: 115 HGVGSSVVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTK-KTGTLIHFLPDP 173

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    FN + ++ RL E +FL   ++I   DK + +          G+  F+ +++  
Sbjct: 174 LIFKNLVFNPNIIKERLHESTFLIKDLKIIFEDKINKKK--YEFINNQGLIDFIKFINEA 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KK      I  + + + I +++A +++D  +E ++ F N++   +GG H +  ++ALT  
Sbjct: 232 KKT-FSDVIYFRSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSV 290

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           + +Y  K    K+  +++ GDD REG +SV+S+++P+    +  QTK KL + E    V+
Sbjct: 291 VNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416
             + D  S WLEE+  +A  +V + + A   + AA+RAR+ T++ K + +   + GKL  
Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              +DP  +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR   +L ++EI +
Sbjct: 411 AQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M  LI NG +YI
Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             PPLY +T   + ++    + +E   + +             G ++ + L  
Sbjct: 530 ALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750
           I +  I      +  L    +K        + LD +    +K   +QRYKGLGEMNA QL
Sbjct: 522 IENGNIYIALPPLYKLTNKNNKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +ETT++P+ R LL++ I D  QA+   + LMG++V  R+++I  N
Sbjct: 581 FETTMDPNNRLLLKININDILQAERQINTLMGNDVSIRKQWIDNN 625


>gi|183508547|ref|ZP_02958068.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182675987|gb|EDT87892.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 642

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 241/593 (40%), Positives = 364/593 (61%), Gaps = 15/593 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YD ++I+IL+GL+AV+KRP MYIG T   +GLHH+I+E++DN+IDE +   
Sbjct: 1   MANK-----YDGNAIKILEGLEAVRKRPGMYIGSTSS-TGLHHLIWEIVDNSIDEVMNAN 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S +V D+GRGIP D++ +  IS  E ++T LHAGGKF++ +YK +GGL
Sbjct: 55  AKNINVILHEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDEGAYKTAGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSSWL   + R+  IY+  FIN G +D  L V G+    TGT + FLP  
Sbjct: 115 HGVGSSVVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTK-KTGTLIHFLPDP 173

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    FN + ++ RL E +FL   ++I   DK + +          G+  F+ +++  
Sbjct: 174 LIFKNLVFNPNIIKERLHESTFLIKDLKIIFEDKINKKK--YEFINNQGLIDFIKFINEA 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KK      I  + + + I +++A +++D  +E ++ F N++   +GG H +  ++ALT  
Sbjct: 232 KKT-FSDVIYFRSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSV 290

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           + +Y  K    K+  +++ GDD REG +SV+S+++P+    +  QTK KL + E    V+
Sbjct: 291 VNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416
             + D  S WLEE+  +A  +V + + A   + AA+RAR+ T++ K + +   + GKL  
Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              +DP  +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR   +L ++EI +
Sbjct: 411 AQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M  LI NG +YI
Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             PPLY +T   + ++    + +E   + +             G ++ + L  
Sbjct: 530 ALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750
           I +  I      +  L    +K        + LD +    +K   +QRYKGLGEMNA QL
Sbjct: 522 IENGNIYIALPPLYKLTNKNNKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +ETT++P+ R LL++ I D  QA+   + LMG++V  R+++I  N
Sbjct: 581 FETTMDPNNRLLLKININDILQAERQINTLMGNDVSIRKQWIDNN 625


>gi|164510802|emb|CAK18883.1| topoisomerase II subunit B [Staphylococcus pseudintermedius]
          Length = 611

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 279/563 (49%), Positives = 381/563 (67%), Gaps = 6/563 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T  E GLHH+++E++DN+IDE+L GYAD I V +  D    V+DNGRGIP D+ +
Sbjct: 1   MYIGSTS-ERGLHHLVWEIVDNSIDEALAGYADNIEVVIEKDNWIKVTDNGRGIPVDIQE 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS  L++ + R+G I+  +
Sbjct: 60  KMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSETLEVYVHRDGRIHHQA 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQI 208
           +  G+    L   G   + TGT + F     IF     +NY+TLQ R+REL+FLN  ++I
Sbjct: 120 YHKGVPAFDLKQVGDT-DQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAFLNKGIRI 178

Query: 209 SLIDKRSPEPREIT-MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           +L D+R  E        Y+GGI+++V  ++ +K+PL   PI +  +RD+I +++A+++N 
Sbjct: 179 TLTDERDEENVREDSYHYEGGIKSYVELINENKEPLHDEPIYVHQTRDDIEVEIALQYNS 238

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G+  N+L + NNI   +GGTH  G + ALTR + +Y  +S   K+DK  + G+D REG T
Sbjct: 239 GFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLSGEDTREGLT 298

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+SIK  DP+F  QTK KL +SEVR +V+   ++    +L EHP  A+IIV+K + AS 
Sbjct: 299 AVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARIIVEKGIMASR 358

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA++AR++TRRK  LDI+SLPGKLADCS +DP +SE+FLVEGDSAGGS K GR    
Sbjct: 359 ARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGSTKSGRDSRT 418

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGKILNVE+AR DK+L++ EI  ++TA GTGIG + FDI+K RYHKI+IMTDAD
Sbjct: 419 QAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGE-FDISKARYHKIVIMTDAD 477

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDGAHIRTLLLTFF+R M  LI  G++YI +PPLY +T+GK   YV ++  L+      +
Sbjct: 478 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKEKLN 537

Query: 568 LSE-EIELFCDSKGVISKNDLRN 589
            +           G ++ + L  
Sbjct: 538 PTPKWSIARYKGLGEMNADQLWE 560



 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 22/182 (12%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690
             RL+ I   +E          G     DI   R  + V      ++G+ I +    +  
Sbjct: 433 KARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 492

Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRK-----GISMQRYK 740
           R     IE  Y+ I       L     K  +      LD +     K       S+ RYK
Sbjct: 493 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKE---KLNPTPKWSIARYK 548

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800
           GLGEMNA QLWETT+NP+ R++L+V + DA +AD  F  LMGD VE RR+FI++N++ + 
Sbjct: 549 GLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEMLMGDVVENRRQFIEDNAVYAN 608

Query: 801 LD 802
           LD
Sbjct: 609 LD 610


>gi|229818508|ref|YP_002880034.1| DNA gyrase, B subunit [Beutenbergia cavernae DSM 12333]
 gi|229564421|gb|ACQ78272.1| DNA gyrase, B subunit [Beutenbergia cavernae DSM 12333]
          Length = 685

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 278/606 (45%), Positives = 376/606 (62%), Gaps = 31/606 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + N   S YDA +I +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE+L GYA
Sbjct: 14  TTNGSASGYDASNITVLEGLEAVRKRPGMYIGST-GERGLHHLVSEVVDNSVDEALAGYA 72

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I VTL  DG   V D+GRGIP D+ + EG  A EV++T LHAGGKF    Y VSGGLH
Sbjct: 73  TRIDVTLTEDGGVRVVDDGRGIPVDIVESEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 132

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ ++ +G+++  S+ +G+ D PL   G A + TGT VTF P+ DI
Sbjct: 133 GVGVSVVNALSHRLEVEVRVQGSVWRQSYTDGVPDAPLER-GEATDVTGTTVTFWPNGDI 191

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------SPE 217
           F    F+++TL+ R ++ +FLN  ++ISL D+R                           
Sbjct: 192 FETTVFDFETLRGRFQQYAFLNKGLEISLTDERRESGTGDEVAGEHADEETSVQLRDESH 251

Query: 218 PREITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENV 273
            R +T  Y  G+  +V +++  K    +    I  +       IS+++AM+W   Y E+V
Sbjct: 252 ERTVTYRYDDGLVDYVRHINAAKRADLVHPEIIDFEAEDVERTISLEIAMQWTSAYSESV 311

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             + N I   +GGTH  G R+ALT  +  Y  +    K+   ++ G+D REG T+VLSIK
Sbjct: 312 HTYANTINTSEGGTHEEGFRAALTTLVNRYAREKNLLKEKDDNLTGEDVREGLTAVLSIK 371

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL ++E R+  +  V D L  WL  HP EA+ IV+K + AS  R AAR
Sbjct: 372 LGEPQFEGQTKTKLGNTEARTFTQKVVFDQLGDWLASHPNEAREIVRKAIQASAARMAAR 431

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+ TRRKG+L+   +PGKL DCS RD   SE+F+VEGDSAGGSA QGR+ E QAILP+
Sbjct: 432 KAREATRRKGLLEGVGMPGKLKDCSSRDASVSEVFIVEGDSAGGSAVQGRNPETQAILPI 491

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGKILNVE+AR DK L +QE+  LITA GTGIG+D FD++KLRYHKI++M DADVDG HI
Sbjct: 492 RGKILNVEKARLDKALGNQEVQALITAFGTGIGED-FDLSKLRYHKIVLMADADVDGQHI 550

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
            TLLLT  FR M  L+ +G +Y+  PPLY +            +   D L+    +    
Sbjct: 551 CTLLLTLLFRYMRPLVEHGHVYLAMPPLYKLKWTNGPHDYVYSDRERDALLEAGRAAGRR 610

Query: 574 LFCDSK 579
           L  D  
Sbjct: 611 LPKDGG 616



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 63/88 (71%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           +LL+   + GR+    G  +QRYKGLGEM+  +LWETT++PDTR+L +V I +A+ AD++
Sbjct: 599 ALLEAGRAAGRRLPKDG-GIQRYKGLGEMDYRELWETTMDPDTRTLKQVTIGEAAMADEI 657

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           F+ LMG++VE RR FIQ N+     LDI
Sbjct: 658 FAVLMGEDVESRRSFIQRNARDVRFLDI 685


>gi|182418445|ref|ZP_02949739.1| DNA gyrase subunit B [Clostridium butyricum 5521]
 gi|237666793|ref|ZP_04526778.1| DNA gyrase subunit B [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377827|gb|EDT75371.1| DNA gyrase subunit B [Clostridium butyricum 5521]
 gi|237657992|gb|EEP55547.1| DNA gyrase subunit B [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 649

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 229/602 (38%), Positives = 345/602 (57%), Gaps = 21/602 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            N++YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E++DN+IDE   GY + +T
Sbjct: 5   NNNTYDVTDLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEIIDNSIDEIANGYGNKVT 63

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +TLN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKF+ K+YK SGGLHGVG 
Sbjct: 64  ITLNEDKSVTIIDNGRGIPTGIHPIKKKSGVEMVYTELHTGGKFDNKNYKTSGGLHGVGA 123

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDTGTEVT 174
           +VVNALS W+++ + + G IY   F             G     L V G   + TGT++T
Sbjct: 124 AVVNALSKWVEVEVYQNGKIYRQRFEYAFDKELKRNMPGTPVTALEVIGKT-DKTGTKIT 182

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P  +IFS  DF +D +  RL+EL+F N  +++ L+D R  +      + + G+  F+ 
Sbjct: 183 FRPDEEIFSTIDFKFDIIDSRLQELAFQNKGIRLELVDTRKGQEASKEYYSENGLLDFIK 242

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           YL+  K PL + PI   G R   +I    ++ +++ D   E +  + NNIP  + GTH +
Sbjct: 243 YLNESKTPLHEIPIIFDGERTVSNIQMYGEICIQFTDSTTEYIASYVNNIPTTEAGTHET 302

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G ++ +TR    + +K    K+  +   GDD REG T+++ IK+ +P F  QTK KL +S
Sbjct: 303 GFKTGMTRAFKEWAKKLGLVKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKTKLGNS 362

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E  +++   V    S W+E++   A  ++   L+A+  RD  ++  D  R+K     A L
Sbjct: 363 EAYTMMNDLVYTKFSEWIEDNKELATFVINNALEAAKRRDKIKKINDAERKKIGKGTAPL 422

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
            GK+A C+ +D   +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + + +L+
Sbjct: 423 AGKVAVCTMKDKTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLA 482

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S+E+    TA+GTG   D++    L+Y KIIIM+DADVDG HIRTL +T+ +R M  LI 
Sbjct: 483 SEELKIFNTAVGTGT-LDNYKEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPLIA 541

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDL 587
           NG LY+ +PPLY + R    + +      +   D +  +     +       G ++ + L
Sbjct: 542 NGHLYLAQPPLYKVYRETKGKSIVKYAYSDDDLDKVKKEVGKGALIQRYKGLGEMNPDQL 601

Query: 588 RN 589
             
Sbjct: 602 WE 603



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 52/69 (75%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           LD +     KG  +QRYKGLGEMN  QLWETTLNP++R+LLRV I DA++A+ + S LMG
Sbjct: 574 LDKVKKEVGKGALIQRYKGLGEMNPDQLWETTLNPESRTLLRVNIEDAAKAEKMVSLLMG 633

Query: 783 DEVEPRREF 791
           D VEPR+ +
Sbjct: 634 DVVEPRKNY 642


>gi|291320111|ref|YP_003515369.1| topoisomerase IV subunit B [Mycoplasma agalactiae]
 gi|290752440|emb|CBH40411.1| Topoisomerase IV subunit B [Mycoplasma agalactiae]
          Length = 641

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 280/652 (42%), Positives = 381/652 (58%), Gaps = 24/652 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + NS+YDA SIQ LKGL+AV+KRP MYIG TD  +GLHH+I+E++DN+IDE+L G A+ I
Sbjct: 4   MSNSNYDASSIQQLKGLEAVRKRPGMYIGSTD-VNGLHHLIWEIVDNSIDEALAGEANEI 62

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS  VSDNGRGIP       G SA E++ T LHAGGKFN+ +YK SGGLHGVG
Sbjct: 63  IVILKKDGSVIVSDNGRGIPVGKTPS-GKSAVELVFTELHAGGKFNEGAYKTSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS+ LK  + R+ +IYE  F NG        + GS  N  GT + F P+ +IF 
Sbjct: 122 SSVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGST-NKRGTSIQFWPNYEIFK 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN++T+  RLRE SFL S++ I LID++S   R     Y  GI+AFV +++  K  L
Sbjct: 181 KAKFNFETIAERLRESSFLISNLSIKLIDEQSE--RSEEFKYSNGIKAFVEFINDSKTAL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +    +   + I I+   ++ DG++E +L F NN+  +DGGTH  GL+SA+T+    +
Sbjct: 239 F-NVYSFKQVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAITKTFNDF 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
                  K  K +  G+D REG T VLS+K+P+    F SQTK+KL + E +S VE  V+
Sbjct: 298 ALDEKVLK-GKNTFDGEDVREGLTVVLSVKIPEKYLEFVSQTKDKLGTPEAKSAVEEAVS 356

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIA-SLPGKLADCSE 419
             L  W+ E+   AK I+ K+  AS  R++AR+AR   R+ K  L     L GKL     
Sbjct: 357 KNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQILSGKLTPAQT 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ K+ ELFLVEGDSAGGSAK GR R  QAILPLRGK++N E+AR   +L ++EI T+I 
Sbjct: 417 KNVKEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDILKNEEINTIIN 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG   FDINK++Y K+IIMTDAD DGAHI+ LLLTFFFR M  LI  G +YI  P
Sbjct: 477 AIGAGIG-QDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRRLIEEGKVYIALP 535

Query: 540 PLYG--ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           PL+   I + K       +E+    L+   +           G ++ + L          
Sbjct: 536 PLFKLTINKAKKEILYAWDENELKELLQTKMKNAEVQRYKGLGEMNADQLW--------- 586

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +  +        +  I+ A ++         +   S    +   +NF  E  
Sbjct: 587 ETTMNPETRTLIQVRIQDAALAERRVSTLMGDNVESRKEWINKNVNFTLEDD 638



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 111/288 (38%), Gaps = 11/288 (3%)

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           ++ +     + + + I      I K  L  I R    +    +  LE      +L E+  
Sbjct: 348 KSAVEEAVSKNLKTWITENK-QIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQI 406

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
           L        +KN     +                  +      +   V N E  + I++ 
Sbjct: 407 LSGKLTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDIL 466

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
              ++   +N I     + +  +    D ++           +      F F    + I 
Sbjct: 467 KNEEINTIINAIGAGIGQDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRRLIE 526

Query: 694 SNRIEENYLTILSLICNGDKIKI------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747
             ++      +  L  N  K +I           LL T          +QRYKGLGEMNA
Sbjct: 527 EGKVYIALPPLFKLTINKAKKEILYAWDENELKELLQTKMKNAE----VQRYKGLGEMNA 582

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
            QLWETT+NP+TR+L++V+I DA+ A+   S LMGD VE R+E+I +N
Sbjct: 583 DQLWETTMNPETRTLIQVRIQDAALAERRVSTLMGDNVESRKEWINKN 630


>gi|56696142|ref|YP_166498.1| DNA topoisomerase IV subunit B [Ruegeria pomeroyi DSS-3]
 gi|56677879|gb|AAV94545.1| DNA topoisomerase IV, B subunit [Ruegeria pomeroyi DSS-3]
          Length = 652

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 246/655 (37%), Positives = 350/655 (53%), Gaps = 22/655 (3%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M +++    Q ++YDA SI++L+GL+ V+KRP MYIG TD E  LHHM+ EVLDN++DE+
Sbjct: 1   MPEDLLSGAQTATYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHMVAEVLDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I V L+ D + TV DNGRGIP D H +  G SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGFANRIEVELHADYALTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ R+  +YE  F  G+   P+   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGASVVNALSDSMVVQVARDKLLYEQRFSRGLPLGPIQQIGAAPNRRGTTVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
               +IF    F    L   +R  ++L S V+I           P E T  + GG+  ++
Sbjct: 180 HADEEIFGHHRFKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETPTEATFHFPGGLADYL 239

Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                      + P        +       ++ A+ W       +  + N +P  +GGTH
Sbjct: 240 KETLGKASTYAEQPFAGTVDFTEKFNTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G  SA+ + I +Y E    S K    +  DD   G  +++S  + +P F  QTK++L 
Sbjct: 300 EAGFWSAILKGIRAYGE--LISNKKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLA 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           + E + +VE  V D    WL      A  I+  ++  +  R   R+ ++ T+RK      
Sbjct: 358 TVEAQRLVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERIRRRQEKE-TQRKTATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DCS    + +ELF+VEGDSAGGSAK  R R+ QA+LPLRGKILNV  A   K+
Sbjct: 417 RLPGKLVDCSATSREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+QEI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI  LL+TFFF QM  +
Sbjct: 477 GSNQEISDLTQALGVGLG-TRFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPM 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPLY +T+G    Y  DE   +++L      +           G +   D
Sbjct: 536 IDTGHLYLACPPLYRLTQGAKRVYCLDEAERDEWLAKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L++     +    I   I +  P      +E+ +           + N     +L
Sbjct: 596 LKDTTMNPETRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENARFVEEL 650



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 5/157 (3%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            ++      D ++      V    +      F F      I +  +      +  L    
Sbjct: 496 RFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDTGHLYLACPPLYRLTQGA 555

Query: 712 DKIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
            ++         + +   +G KG I + R+KGLGEM+A  L +TT+NP+TR L+RV I +
Sbjct: 556 KRVYCLDEAERDEWLAKGLGGKGKIDVSRFKGLGEMDAKDLKDTTMNPETRKLIRVTIDE 615

Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
               +  DL  RLMG + E R ++IQEN+     LD+
Sbjct: 616 DEPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 652


>gi|309801982|ref|ZP_07696096.1| DNA gyrase, B subunit [Bifidobacterium dentium JCVIHMP022]
 gi|308221430|gb|EFO77728.1| DNA gyrase, B subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 698

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 256/606 (42%), Positives = 366/606 (60%), Gaps = 27/606 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D++    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 33  DSLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 91

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG   V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 92  HIEVTILPDGGVRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 151

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFLPSS 179
           VG+SVVNALS+ + + ++R+G  +  ++++      L   G     G  TGT VTF    
Sbjct: 152 VGISVVNALSTRVDIEVRRQGFHWTQTYVDQKPTARLAK-GEPMAEGESTGTSVTFWADG 210

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----------------DKRSPEPREITM 223
            IF    ++++TL++R ++++FLN  +++SL                 D+   + + +T 
Sbjct: 211 KIFETTTYDFETLRNRFQQMAFLNKGLKLSLTDLREPDQAGDEVAGELDETETKHQTVTY 270

Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V YL + +K     +  I  +    +  IS ++AM+W   Y E V  F N 
Sbjct: 271 QYNEGIKDYVGYLVKSRKATPVEEDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANT 330

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  I  Y  +    K    ++ GDD REG T+V+S+K+  P+F
Sbjct: 331 ISTTEGGTHEEGFRAALTSLINRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTTPQF 390

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 391 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPSEAKNIIQKAIEASRARIAAKKARENT 450

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 451 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 510

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S+ I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 511 TERASLDRMMKSETIESLITAVGGGYGED-FDLSKVRYHKVIIMADADVDGAHIATLNLT 569

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 570 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEG 629

Query: 579 KGVISK 584
                 
Sbjct: 630 IQRYKG 635



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V+I DA+ AD+ 
Sbjct: 611 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVQIEDAAAADET 670

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 671 FSMLMGDEVEPRRLFIQRNANKV 693


>gi|306823992|ref|ZP_07457366.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
           dentium ATCC 27679]
 gi|304552990|gb|EFM40903.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
           dentium ATCC 27679]
          Length = 704

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 256/606 (42%), Positives = 366/606 (60%), Gaps = 27/606 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D++    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 39  DSLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 97

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG   V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 98  HIEVTILPDGGVRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 157

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFLPSS 179
           VG+SVVNALS+ + + ++R+G  +  ++++      L   G     G  TGT VTF    
Sbjct: 158 VGISVVNALSTRVDIEVRRQGFHWTQTYVDQKPTARLAK-GEPMAEGESTGTSVTFWADG 216

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----------------DKRSPEPREITM 223
            IF    ++++TL++R ++++FLN  +++SL                 D+   + + +T 
Sbjct: 217 KIFETTTYDFETLRNRFQQMAFLNKGLKLSLTDLREPDQAGDEVAGELDETETKHQTVTY 276

Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V YL + +K     +  I  +    +  IS ++AM+W   Y E V  F N 
Sbjct: 277 QYNEGIKDYVGYLVKSRKATPVEEDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANT 336

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  I  Y  +    K    ++ GDD REG T+V+S+K+  P+F
Sbjct: 337 ISTTEGGTHEEGFRAALTSLINRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTTPQF 396

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 397 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPSEAKNIIQKAIEASRARIAAKKARENT 456

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 457 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 516

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S+ I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 517 TERASLDRMMKSETIESLITAVGGGYGED-FDLSKVRYHKVIIMADADVDGAHIATLNLT 575

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 576 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEG 635

Query: 579 KGVISK 584
                 
Sbjct: 636 IQRYKG 641



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V+I DA+ AD+ 
Sbjct: 617 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVQIEDAAAADET 676

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 677 FSMLMGDEVEPRRLFIQRNANKV 699


>gi|171741730|ref|ZP_02917537.1| hypothetical protein BIFDEN_00821 [Bifidobacterium dentium ATCC
           27678]
 gi|283454964|ref|YP_003359528.1| DNA gyrase [Bifidobacterium dentium Bd1]
 gi|171277344|gb|EDT45005.1| hypothetical protein BIFDEN_00821 [Bifidobacterium dentium ATCC
           27678]
 gi|283101598|gb|ADB08704.1| DNA gyrase [Bifidobacterium dentium Bd1]
          Length = 704

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 256/606 (42%), Positives = 366/606 (60%), Gaps = 27/606 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D++    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 39  DSLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 97

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG   V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 98  HIEVTILPDGGVRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 157

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFLPSS 179
           VG+SVVNALS+ + + ++R+G  +  ++++      L   G     G  TGT VTF    
Sbjct: 158 VGISVVNALSTRVDIEVRRQGFHWTQTYVDQKPTARLAK-GEPMAEGESTGTSVTFWADG 216

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----------------DKRSPEPREITM 223
            IF    ++++TL++R ++++FLN  +++SL                 D+   + + +T 
Sbjct: 217 KIFETTTYDFETLRNRFQQMAFLNKGLKLSLTDLREPDQAGDEVAGELDETETKHQTVTY 276

Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V YL + +K     +  I  +    +  IS ++AM+W   Y E V  F N 
Sbjct: 277 QYNEGIKDYVDYLVKSRKATPVEEDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANT 336

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  I  Y  +    K    ++ GDD REG T+V+S+K+  P+F
Sbjct: 337 ISTTEGGTHEEGFRAALTSLINRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTTPQF 396

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 397 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPSEAKNIIQKAIEASRARIAAKKARENT 456

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 457 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 516

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S+ I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 517 TERASLDRMMKSETIESLITAVGGGYGED-FDLSKVRYHKVIIMADADVDGAHIATLNLT 575

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       + 
Sbjct: 576 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEG 635

Query: 579 KGVISK 584
                 
Sbjct: 636 IQRYKG 641



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++P+ R L +V+I DA+ AD+ 
Sbjct: 617 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVQIEDAAAADET 676

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 677 FSMLMGDEVEPRRLFIQRNANKV 699


>gi|71725922|gb|AAZ39079.1| gyrase subunit B [Exiguobacterium antarcticum]
          Length = 513

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 268/516 (51%), Positives = 365/516 (70%), Gaps = 4/516 (0%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIG T    GLHH+++E++DN+IDE+L GY D I VT+    S  V DNGRGIP 
Sbjct: 1   KRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIESGNSILVEDNGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ +KR   +
Sbjct: 60  DIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204
           Y  ++  G+    L V G    +TGT + F P  +IF    +++YD L  RLREL+FLN 
Sbjct: 120 YYQAYHRGVPAEDLAVIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            + I + D RS EP   +  Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A++
Sbjct: 179 GLTIQITDDRSDEPIMRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +NDG+  N+  FTNNIP  +GGTH +G ++ALTR +  Y +K    K    ++ G+D RE
Sbjct: 239 YNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVVNDYAKKFGLMKDADGTLSGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +++SIK P+P+F  QTK KL +S+ R+  ++  +     ++ E+P  A+ IV+K + 
Sbjct: 299 GMIAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMM 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR+LTRRKGVL+++SLPGKLADCS RD   SE+++VEGDSAGGSAK GR 
Sbjct: 359 ASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRD 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R  QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMT
Sbjct: 419 RHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMT 477

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           DADVDGAHIRTLLLTFF+R M  L+ +G++YI +PP
Sbjct: 478 DADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513


>gi|313678724|ref|YP_004056464.1| DNA topoisomerase IV subunit B [Mycoplasma bovis PG45]
 gi|312950293|gb|ADR24888.1| DNA topoisomerase IV, B subunit [Mycoplasma bovis PG45]
          Length = 638

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 271/593 (45%), Positives = 368/593 (62%), Gaps = 17/593 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + NS+YDA SIQ LKGL+AV+KRP MYIG TD  +GLHH+I+E++DN+IDE+L G A+ I
Sbjct: 1   MSNSNYDASSIQQLKGLEAVRKRPGMYIGSTD-VNGLHHLIWEIVDNSIDEALAGEANEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS  VSDNGRGIP       G SA E++ T LHAGGKFN+ +YK SGGLHGVG
Sbjct: 60  AVILKNDGSVVVSDNGRGIPVGKTPS-GKSAVELVFTELHAGGKFNEGAYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS+ LK  + R+ +IYE  F NG        + GS  N  GT + F P+ +IF 
Sbjct: 119 SSVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGST-NKRGTLIQFWPNYEIFK 177

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN++T+  RLRE SFL S++ I L+D++S +       Y  GI+AFV +++  K  L
Sbjct: 178 KAKFNFETIAERLRESSFLISNLSIKLLDEQSGKS--EEFKYSNGIKAFVEFINDSKTAL 235

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +    +   + I I+   ++ DG++E +L F NN+  +DGGTH  GL+SA+T+    +
Sbjct: 236 F-NVYSFKTVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAITKTFNDF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
                  K  K +  G+D REG T VLS+K+P+    F SQTK+KL + E +S VE  V+
Sbjct: 295 ALDEKVLK-GKNTFDGEDVREGLTVVLSVKIPEKFLEFVSQTKDKLGTPEAKSAVEEAVS 353

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP--GKLADCSE 419
             L  W+ E+   AK I+ K+  AS  R++AR+AR   R+            GKL     
Sbjct: 354 KNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKERQILSGKLTPAQT 413

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ K+ ELFLVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR   +L ++EI T+I 
Sbjct: 414 KNVKEKELFLVEGDSAGGSAKSGRDRKFQAILPLRGKVINTEKARLIDILKNEEINTIIN 473

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG   FDINK++Y K+IIMTDAD DGAHI+ LLLTFFFR M  LI  G +YI  P
Sbjct: 474 AIGAGIG-VDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRKLIEEGKVYIALP 532

Query: 540 PLYGI---TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PL+ +      K + Y  DE+ L++ L+   +           G ++ + L  
Sbjct: 533 PLFKLSINKAQKKILYAWDEDELKE-LLQSKMKGAEVQRYKGLGEMNADQLWE 584



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 108/284 (38%), Gaps = 3/284 (1%)

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           ++ +     + + + I      I K  L  I R    +    +  LE      +L E   
Sbjct: 345 KSAVEEAVSKNLKTWITENK-QIAKKILDKIKRASDSRESARKARLEARKTKSALKERQI 403

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
           L        +KN     +                  K      +   V N E  + I++ 
Sbjct: 404 LSGKLTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRKFQAILPLRGKVINTEKARLIDIL 463

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ--EQFVLEGSSIFSFGSKYKR 691
              ++   +N I       +  +    D ++             +L  +  F    K   
Sbjct: 464 KNEEINTIINAIGAGIGVDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRKLIE 523

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLW 751
                I    L  LS+     KI        L  +     KG  +QRYKGLGEMNA QLW
Sbjct: 524 EGKVYIALPPLFKLSINKAQKKILYAWDEDELKELLQSKMKGAEVQRYKGLGEMNADQLW 583

Query: 752 ETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           ETT+NP TR+L++V+I DA+ A+   S LMGD V+ R+E+I +N
Sbjct: 584 ETTMNPKTRTLIQVRIQDAALAERRVSTLMGDNVDSRKEWINKN 627


>gi|13358029|ref|NP_078303.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170761866|ref|YP_001752551.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11270883|pir||G82886 topoisomerase IV subunit B UU466 [imported] - Ureaplasma
           urealyticum
 gi|6899460|gb|AAF30878.1|AE002143_3 topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827443|gb|ACA32705.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 642

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 240/593 (40%), Positives = 364/593 (61%), Gaps = 15/593 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YD ++I+IL+GL+AV+KRP MYIG T   +GLHH+I+E++DN+IDE +   
Sbjct: 1   MANK-----YDGNAIKILEGLEAVRKRPGMYIGSTSS-TGLHHLIWEIVDNSIDEVMNAN 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S +V D+GRGIP D++ +  IS  E ++T LHAGGKF++ +YK +GGL
Sbjct: 55  AKNINVILHEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDESAYKTAGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSSWL   + R+  IY+  FIN G ++  L V G+    TGT + FLP  
Sbjct: 115 HGVGSSVVNALSSWLICEVYRDQKIYQAKFINGGHINQSLKVIGTTK-KTGTLIHFLPDP 173

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    FN + ++ RL E +FL   ++I   DK + +          G+  F+ +++  
Sbjct: 174 LIFKNLVFNPNIIKERLHESTFLIKDLKIIFEDKINKKK--YEFINNQGLIDFIKFINEA 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KK      I  + + + I +++A +++D  +E ++ F N++   +GG H +  ++ALT  
Sbjct: 232 KKT-FSDVIYFRSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSV 290

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           + +Y  K    K+  +++ GDD REG +SV+S+++P+    +  QTK KL + E    V+
Sbjct: 291 VNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416
             + D  S WLEE+  +A  +V + + A   + AA+RAR+ T++ K + +   + GKL  
Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              +DP  +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR   +L ++EI +
Sbjct: 411 AQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M  LI NG +YI
Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             PPLY +T   + ++    + +E   + +             G ++ + L  
Sbjct: 530 ALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750
           I +  I      +  L    +K        + LD +    +K   +QRYKGLGEMNA QL
Sbjct: 522 IENGNIYIALPPLYKLTNKNNKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +ETT++P+ R LL++ I D  QA+   + LMG++V  R+++I  N
Sbjct: 581 FETTMDPNNRLLLKININDILQAERQINTLMGNDVSIRKQWIDNN 625


>gi|158424137|ref|YP_001525429.1| DNA topoisomerase IV subunit B [Azorhizobium caulinodans ORS 571]
 gi|158331026|dbj|BAF88511.1| gram negative topoisomerase IV subunit B [Azorhizobium caulinodans
           ORS 571]
          Length = 672

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/625 (37%), Positives = 337/625 (53%), Gaps = 19/625 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A  I++L+GL+ V++RP MYIG TD    LHH+  EV+DN++DE++ G+A  I V 
Sbjct: 27  SDYTAAHIEVLEGLEPVRRRPGMYIGGTDA-KALHHLFAEVIDNSMDEAVAGHATFIEVQ 85

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ DGS TV DNGRGIP + H +  G SA EVIMT LH+GGKF+ K Y+ SGGLHGVGVS
Sbjct: 86  LSNDGSLTVIDNGRGIPVEEHPKFPGKSALEVIMTTLHSGGKFDSKVYETSGGLHGVGVS 145

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS   ++ + R   +Y  +F  G     L   G   N  GT++ F P  DIF    
Sbjct: 146 VVNALSDAFEVEVARNQTLYRQTFSRGTPQGKLKEVGRITNRRGTKIRFHPDPDIFGPSA 205

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDRH 239
            F    +    R  ++L   V+I            +  P ++T  + GG+  +++     
Sbjct: 206 KFEPGRVFRMARAKAYLFGGVEIRWSCDPELLAGTTGVPEKMTFRFPGGLRDYLAADIEG 265

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  +       +  +   + S + A+ W       +  + N IP  DGGTH +GLR+ L 
Sbjct: 266 QTLVHGDIFSGRVQKPGGHGSAEWAVAWIADGDGGISSYCNTIPTPDGGTHENGLRAVLL 325

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +  + E++  SK+    + G+D   G  ++LS+ + +P F  QTKE+L ++E   +VE
Sbjct: 326 KGLREHGERTNQSKRA-ALITGEDVTAGCAAMLSVFVREPEFQGQTKERLATAEAARIVE 384

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D    WL  +P +A  +   V++ +  R   ++ ++   RK  +    LPGKLADC
Sbjct: 385 QTVRDPFDHWLAANPAQATRLFDHVVERAEERLRRKQEKE-ISRKTAVRKLRLPGKLADC 443

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S  +   SELF+VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  DK+  +Q++  L
Sbjct: 444 SNTEAAGSELFIVEGDSAGGSAKQARDRRTQAVLPLRGKILNVANAGRDKLAQNQQLADL 503

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ALG G     +    LRY K+IIMTDADVDGAHI +LL+TFF+RQMP L+  G L++ 
Sbjct: 504 GQALGCGT-LSHYREADLRYEKVIIMTDADVDGAHIASLLVTFFYRQMPKLVDEGHLFLA 562

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI---D 592
            PPLY IT+G    Y +D+   E  L  +               G +    L+       
Sbjct: 563 VPPLYRITQGAKTLYARDDAHKEKLLKKEFNGRGKVEIGRFKGLGEMMPAQLKETTMDPK 622

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAV 617
               +   I++         +E+ +
Sbjct: 623 TRTLLQVSIEEAARAATDDIVERLM 647



 Score =  123 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 54/80 (67%), Gaps = 5/80 (6%)

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA--DDLFSRLMGDEVE 786
            GR  + + R+KGLGEM  +QL ETT++P TR+LL+V I +A++A  DD+  RLMG++ E
Sbjct: 593 NGRGKVEIGRFKGLGEMMPAQLKETTMDPKTRTLLQVSIEEAARAATDDIVERLMGNKPE 652

Query: 787 PRREFIQENSLPSA---LDI 803
            R  FI E++  +    LDI
Sbjct: 653 ARFAFISEHAAFAGEELLDI 672


>gi|240255313|ref|NP_187638.4| ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)
           [Arabidopsis thaliana]
          Length = 693

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 259/632 (40%), Positives = 366/632 (57%), Gaps = 47/632 (7%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  +  Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  G+A 
Sbjct: 10  ESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGFAS 68

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA--GGKFNQKSYKVSGGL 120
            I V L+ D S ++SDNGRGIPTDLH   G S+ E ++T LHA          Y VSGGL
Sbjct: 69  KIDVVLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGL 128

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ ++R+G  ++  +  G     L        +    GT + F P
Sbjct: 129 HGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWP 188

Query: 178 SSD----IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT--MFYKGGIEA 231
             +      +   F+++T+  R+REL+FLN  V ISL  +     R++    FY GG+  
Sbjct: 189 DKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTE 248

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +VS+L+  KKPL       +   +  ++D++++W  D Y + +L + N+I   DGGTH+ 
Sbjct: 249 YVSWLNTDKKPLHDVLG-FRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIE 307

Query: 291 GLRSALTRQITSYVEKSF--------------------------------GSKKDKRSVI 318
           G++++LTR + S  +K                                   + +   S+ 
Sbjct: 308 GVKASLTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHALRTINNEKDISLS 367

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           G+  REG T ++S+K+P+P F  QTK +L + EVR +V+  V + L+ +LE HP   + I
Sbjct: 368 GEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESI 427

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           + K L+A     AA+RAR+L R K VL  +SLPGKLADCS  DP +SE+F+VEGDSAGGS
Sbjct: 428 ISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGS 487

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AKQGR R  QAILPLRGKILN+ER     M  ++EI  LI  LG G+  + F+   LRYH
Sbjct: 488 AKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYH 547

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEES 558
           KIII+TDADVDGAHIRTLLLTFFFR   +L   G +Y+  PPL+ + RGK   Y  D+ +
Sbjct: 548 KIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAA 607

Query: 559 LEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           L+    +   +           G +    L  
Sbjct: 608 LKKITASFPGNASYNIQRFKGLGEMMPAQLWE 639



 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 117/334 (35%), Gaps = 38/334 (11%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLEDY 562
           D  + G H+R  L      ++P+    G        P +  I      +Y+ +   L   
Sbjct: 363 DISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPD 422

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFI----------------------DDALKIDKL 600
           ++   +S+ +  +  +       +L                           +   ++  
Sbjct: 423 VLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGD 482

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHG 655
                    +    QA++       + +  + +   K     N I       K E     
Sbjct: 483 SAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKE 542

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
           ++    I++      V    +      F F  +     +  I      +  +        
Sbjct: 543 NLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHY 601

Query: 716 ITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
                + L  I +   G    ++QR+KGLGEM  +QLWETT+NPDTR L ++ + DA++ 
Sbjct: 602 CYD-DAALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAET 660

Query: 774 DDLFSRLMGDEVEPRREFIQENS----LPSALDI 803
           + +FS LMG  V+ R+E I+  +    L   LDI
Sbjct: 661 NMVFSSLMGARVDVRKELIKSAATRMNLE-NLDI 693


>gi|126725667|ref|ZP_01741509.1| DNA topoisomerase IV subunit B [Rhodobacterales bacterium HTCC2150]
 gi|126704871|gb|EBA03962.1| DNA topoisomerase IV subunit B [Rhodobacterales bacterium HTCC2150]
          Length = 653

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/650 (36%), Positives = 340/650 (52%), Gaps = 18/650 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +    + +YDA SI++L+GL+ V+ RP MYIG TD E  LHH++ EVLDN++DE++ G+A
Sbjct: 7   TTPKDDPTYDASSIEVLEGLEPVRLRPGMYIGGTD-ERALHHLVAEVLDNSMDEAVAGHA 65

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           + I V L+ D + T+ DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+ SGGL
Sbjct: 66  NRIEVELHADYAVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGL 125

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  + +++ R   +YE  F  GI   P+   G+A N  GT VTF     
Sbjct: 126 HGVGASVVNALSDSMVVQVARNKELYEQRFSRGIPQGPVEKVGAAPNRRGTSVTFHADEQ 185

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--EPREITMFYKGGIEAFVSYLDR 238
           IF    F    L   +R  ++L S V+I    +      P E T  + GG+  +++    
Sbjct: 186 IFGHHRFKPARLFKSIRSKAYLFSGVEIRWKSEIDDGTTPTEATFHFPGGLSDYLNETLG 245

Query: 239 HKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                 + P        +       ++ A+ W       +  + N +P  +GGTH SG  
Sbjct: 246 TATTYAEKPFAGTVDFQEKFGVPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHESGFW 305

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+ + I +Y E           +  +D   G ++++S  + +P F  QTK++L + E +
Sbjct: 306 AAVLKGIKAYGELINNK--KATQITREDLTTGGSALVSCFISEPEFVGQTKDRLATVEAQ 363

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VE+ V D    WL      A  I+  ++  S  R   +  ++ T RK       LPGK
Sbjct: 364 RLVENSVRDHFDNWLAADTKSAGAILDFLVLRSEERLRRKMEKE-TARKSATKKLRLPGK 422

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DCS  + + +ELF+VEGDSAGGSAK  R R+ QA+LPLRGKILNV  A   KM  + E
Sbjct: 423 LTDCSNSNREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKMGQNAE 482

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI  LL+TFF+ QM  +I NG 
Sbjct: 483 INDLCQALGVGLG-TKFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRPMIDNGH 541

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI 591
           LY+  PPL+ +T+G    Y  DE    ++       +           G +   DL++  
Sbjct: 542 LYLACPPLFRLTQGAKRVYCLDEIEKNNHFEKGLGGKGKIDVSRFKGLGEMDAKDLKDTT 601

Query: 592 DD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            +      I   I +  P      +E+ +           + N     +L
Sbjct: 602 MNPLTRKLIRVTIDEDEPGETGDLVERLMGKKPEKRFEYIQENAKFVEEL 651



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 5/156 (3%)

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++      D ++      V    +      F +      I +  +      +  L     
Sbjct: 498 FNVDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRPMIDNGHLYLACPPLFRLTQGAK 557

Query: 713 KIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         +     +G KG I + R+KGLGEM+A  L +TT+NP TR L+RV I + 
Sbjct: 558 RVYCLDEIEKNNHFEKGLGGKGKIDVSRFKGLGEMDAKDLKDTTMNPLTRKLIRVTIDED 617

Query: 771 S--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
              +  DL  RLMG + E R E+IQEN+     LD+
Sbjct: 618 EPGETGDLVERLMGKKPEKRFEYIQENAKFVEELDV 653


>gi|164510805|emb|CAK18885.1| topoisomerase II subunit B [Staphylococcus pseudintermedius]
          Length = 611

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 279/563 (49%), Positives = 381/563 (67%), Gaps = 6/563 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T  E GLHH+++E++DN+IDE+L GYAD I V +  D    V+DNGRGIP D+ +
Sbjct: 1   MYIGSTS-ERGLHHLVWEIVDNSIDEALAGYADNIEVVIEKDNWIKVTDNGRGIPVDIQE 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS  L++ + R+G I+  +
Sbjct: 60  KMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSDTLEVYVHRDGRIHHQA 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQI 208
           +  G+    L   G   + TGT + F     IF     +NY+TLQ R+REL+FLN  ++I
Sbjct: 120 YHKGVPAFDLKQVGDT-DQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAFLNKGIRI 178

Query: 209 SLIDKRSPEPREIT-MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           +L D+R  E        Y+GGI+++V  ++ +K+PL   PI +  +RD+I +++A+++N 
Sbjct: 179 TLTDERDEENVREDSYHYEGGIKSYVELINENKEPLHDEPIYVHQTRDDIEVEIALQYNS 238

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G+  N+L + NNI   +GGTH  G + ALTR + +Y  +S   K+DK  + G+D REG T
Sbjct: 239 GFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLSGEDTREGLT 298

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+SIK  DP+F  QTK KL +SEVR +V+   ++    +L EHP  A+IIV+K + AS 
Sbjct: 299 AVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARIIVEKGIMASR 358

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA++AR++TRRK  LDI+SLPGKLADCS +DP +SE+FLVEGDSAGGS K GR    
Sbjct: 359 ARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGSTKSGRDSRT 418

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGKILNVE+AR DK+L++ EI  ++TA GTGIG + FDI+K RYHKI+IMTDAD
Sbjct: 419 QAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGE-FDISKARYHKIVIMTDAD 477

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDGAHIRTLLLTFF+R M  LI  G++YI +PPLY +T+GK   YV ++  L+      +
Sbjct: 478 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKEKLN 537

Query: 568 LSE-EIELFCDSKGVISKNDLRN 589
            +           G ++ + L  
Sbjct: 538 PTPKWSIARYKGLGEMNADQLWE 560



 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 22/182 (12%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690
             RL+ I   +E          G     DI   R  + V      ++G+ I +    +  
Sbjct: 433 KARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 492

Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRK-----GISMQRYK 740
           R     IE  Y+ I       L     K  +      LD +     K       S+ RYK
Sbjct: 493 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKE---KLNPTPKWSIARYK 548

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800
           GLGEMNA QLWETT+NP+ R++L+V + DA +AD  F  LMGD VE RR+FI++N++ + 
Sbjct: 549 GLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEMLMGDVVENRRQFIEDNAVYAN 608

Query: 801 LD 802
           LD
Sbjct: 609 LD 610


>gi|310820411|ref|YP_003952769.1| type II DNA topoisomerase subunit B [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393483|gb|ADO70942.1| Type II DNA topoisomerase, B subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 642

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/592 (39%), Positives = 352/592 (59%), Gaps = 12/592 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +  +Y    IQ+L+GL+ V+KRP+MYIG TD  +G HH+++E+LDN++DE + G+A  + 
Sbjct: 3   KKETYTGADIQVLEGLEPVRKRPAMYIGGTD-GTGYHHLLWEILDNSVDEVINGHASTVE 61

Query: 66  VTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           VTL+ D  + TV DNGRGIP D+  +    A EVI+T LHAGGKF Q +Y  SGGLHGVG
Sbjct: 62  VTLHKDSRTITVVDNGRGIPVDIMPKLKKPAVEVILTTLHAGGKFEQGNYIHSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
            SVVNAL+  L + IKREG  +   +  G    PL V G A   TGT +TF P  +IF  
Sbjct: 122 SSVVNALARKLLVEIKREGKRHVQHYARGKATTPLKVEGPA-RGTGTSITFEPDPEIFGE 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+ + ++ RL   S+L+  + +   D+ +     +T  + GGI  +++ +   +   
Sbjct: 181 KLKFDPELIRERLEAKSYLHKGMTVVWKDETASPATSVTYKHDGGIAEYLNKVVAERNKP 240

Query: 244 MQSP---IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +  P   +        + ++ A+ W +   EN+  + N IP   GGTH +GLR A+ + +
Sbjct: 241 VVPPGGAVFYHARDSEVRLEAALVWTEATDENIRSYVNGIPTPQGGTHEAGLRGAVVKAV 300

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E          ++  +D REG T++LS  + +P+F  QTK +L + EV + V+  +
Sbjct: 301 RNYIETHN-LSPKGVTLTAEDIREGITAILSCYVVEPQFQGQTKGRLNNPEVTAQVDGVL 359

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG-VLDIASLPGKLADCSE 419
              L  WL ++    +  V +++ A+  R+A+R A     RK  V    +LPGKLADCS 
Sbjct: 360 RPALEKWLNDNKSIGEAAVARIILAARAREASRAASQAVSRKTAVSHRLNLPGKLADCSS 419

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            +P  SELFLVEGDSAGGSAKQGR R  QAILPLRGK+LN E+A  DK+ +++E+  +++
Sbjct: 420 TEPSTSELFLVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTDKVATNKELQDIVS 479

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG D FD++KLRY +I ++ DAD DG HI TLLLTFF+R +  LI +G ++I +P
Sbjct: 480 ALGCGIGSD-FDLSKLRYGRIFLLMDADSDGHHIATLLLTFFYRHLRPLIESGAVHIAQP 538

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           PLY +  GK   +  DE   +  +  ++        +     G ++ ++L+ 
Sbjct: 539 PLYKVEIGKETYWALDEADRDRIVREKAKGNAKPNIMRFKGLGEMTADELKT 590



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++ R+KGLGEM A +L  TTL+P  R  L+V I +  + D + + L+G +V  R +FI E
Sbjct: 573 NIMRFKGLGEMTADELKTTTLDPHKRMSLQVTIDNPLETDRVINDLLGKDVSARFKFIME 632

Query: 795 NSLPS-ALD 802
            +     LD
Sbjct: 633 RAGEVQDLD 641


>gi|148255370|ref|YP_001239955.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. BTAi1]
 gi|146407543|gb|ABQ36049.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. BTAi1]
          Length = 687

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 241/655 (36%), Positives = 346/655 (52%), Gaps = 26/655 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A  I 
Sbjct: 40  SEGEYTARDIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIE 98

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L+  G  TV+DNGRGIP D H +    SA E+IM  LHAGGKF+ K Y+ SGGLHGVG
Sbjct: 99  VELDAQGFLTVTDNGRGIPVDPHPKFPKKSALEIIMCTLHAGGKFDSKVYETSGGLHGVG 158

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           +SVVNALS+ L++ + R   +Y M F  G     L   G   N  GT+V F P   IF +
Sbjct: 159 ISVVNALSTRLEVEVARNQKLYRMIFERGHPKGKLEEIGKVANRRGTKVRFQPDPTIFGA 218

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I                 E T  + GG++ +++   
Sbjct: 219 KATFKPQRLFKMARSKAYLFGGVEIRWKCDPSLLKGIEDVQPEATFHFPGGLKDYLAAAI 278

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                +       +  R   +   + A+ W       +  + N IP  DGGTH SG+RSA
Sbjct: 279 HADTLVHPDIFAGKSGRTGGHGGCEWAVAWTADADGFLSSYCNTIPTPDGGTHESGIRSA 338

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E+     K   ++  +D   G   +LS+ + +P F  QTK++L ++E + +
Sbjct: 339 LLRGLKDHAERVGQ-GKRSANITSEDIMAGAAIMLSVFVREPEFQGQTKDRLATAEAQRI 397

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  V D    WL  +P++A  ++  V++        RR    T RK       LPGKLA
Sbjct: 398 VEQAVKDPFDHWLSGNPVQANRLLDFVIER-AEERIRRRQEKETARKTATKKLRLPGKLA 456

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC++   + SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK+ ++ ++ 
Sbjct: 457 DCTDAGTEGSELFIVEGDSAGGSAKQARDRKKQAVLPLRGKILNVASAGKDKLTANAQLA 516

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L+ A+G G G  S+    LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI  G LY
Sbjct: 517 DLVMAIGAGTG-TSYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLY 575

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +  PPLY +T      Y +DE   ++ L  +  +         KG+     +   + +  
Sbjct: 576 LAVPPLYRLTHNSKTFYARDEAHRDEILKREFNANAKVDIGRFKGL--GEMMPAQLKET- 632

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                      +  K  + + V+       +   +   + +K   R  FI+EK+E
Sbjct: 633 ---------TMDPAKRTLLRVVLLADDRDGTADSVERLMGTKAEARFAFISEKAE 678



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 7/190 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S  +  ++  ++LA+ +  I   +  S+         ++      V    +    
Sbjct: 498 ILNVASAGKDKLTANAQLADLVMAIGAGTGTSYREEDLRYQRIIIMTDADVDGAHIASLL 557

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F +    + I    +      +  L  N             + +         + + R
Sbjct: 558 ITFFYRQMPRLIDEGHLYLAVPPLYRLTHNSKTFYARDEAHRDEILKREFNANAKVDIGR 617

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM  +QL ETT++P  R+LLRV +   D     D   RLMG + E R  FI E +
Sbjct: 618 FKGLGEMMPAQLKETTMDPAKRTLLRVVLLADDRDGTADSVERLMGTKAEARFAFISEKA 677

Query: 797 LPSA---LDI 803
             ++   LD+
Sbjct: 678 EFASDELLDV 687


>gi|225020879|ref|ZP_03710071.1| hypothetical protein CORMATOL_00887 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946361|gb|EEG27570.1| hypothetical protein CORMATOL_00887 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 646

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 255/611 (41%), Positives = 364/611 (59%), Gaps = 38/611 (6%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T+ E GLHH+++EV+DN++DE++ GYAD + VT+  DG   V DNGRGIP ++H 
Sbjct: 1   MYIGSTN-ERGLHHLVWEVVDNSVDEAMAGYADKVEVTILADGGIEVIDNGRGIPVEMHP 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
             G    +V+MT+LHAGGKF+ +SY VSGGLHGVG+SVVNALS+ ++  IKR+G  +  +
Sbjct: 60  S-GAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVVNALSTRVEADIKRDGKHWYQN 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F N I    L V G     TGT V F P  ++F    F+++ +  RL+E++FLN  + I+
Sbjct: 119 FTNAIP-EEL-VAGGPAEGTGTTVRFWPDPEVFETTVFSFELIARRLQEMAFLNKGLTIT 176

Query: 210 LIDKRSPEPREI--------------------------------TMFYKGGIEAFVSYLD 237
           L DKR+ E                                    T +Y  G++ +V +L+
Sbjct: 177 LTDKRASEEEIELETLAEEIAEGDPETAVEAAEEKVVKKKEKKKTFYYPNGLQDYVEHLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + K  +  + I ++   +N+ +++AM+WN GY ++V  F N I   +GGTH  G R+ALT
Sbjct: 237 KSKTAIHPTIISLEVKGENLEVEVAMQWNSGYAQSVHTFANTINTIEGGTHEEGFRAALT 296

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  Y  +    K+ ++++ GDDCREG  +V+S+++ +P+F  QTK KL +SEVR  V+
Sbjct: 297 SLMNKYAREHKLLKEKEQNLTGDDCREGLAAVISVRVGEPQFEGQTKTKLGNSEVRGFVQ 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +N+ +S WL+ +P EAK+I+ K + ++  R AAR+AR++ RRK   D+  LPGKLADC
Sbjct: 357 KAINEHVSDWLDANPAEAKVIINKAVSSAHARVAARKAREMVRRKSATDLGGLPGKLADC 416

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
             +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +
Sbjct: 417 RSKDPAKSELYIVEGDSAGGSAKGGRDSMYQAILPLRGKILNVEKARLDKVLKNNEVQAI 476

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALGTGI  D FDI KLRY KI++M DADVDG HI TLLLT  FR MP LI  G +++ 
Sbjct: 477 ITALGTGI-HDEFDIQKLRYGKIVLMADADVDGQHIATLLLTLLFRFMPQLIEEGHVFLA 535

Query: 538 KPPLYGITR-GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           +PPLY +        +   +   ++ L     +       D           N  +    
Sbjct: 536 QPPLYKLKWAKGDPGFAYSDNQRDELLAEGLAAGRKINKDDGIQRYKGLGEMNASELWET 595

Query: 597 IDKLIKDFYPN 607
                      
Sbjct: 596 TLDPQVRILRR 606



 Score =  138 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
            LL    + GRK I+    +QRYKGLGEMNAS+LWETTL+P  R L RV + DA  AD+L
Sbjct: 560 ELLAEGLAAGRK-INKDDGIQRYKGLGEMNASELWETTLDPQVRILRRVDMNDAQLADEL 618

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI   +     LD+
Sbjct: 619 FSILMGDDVAARRSFITRKAKDVRFLDV 646


>gi|19909659|dbj|BAB87025.1| DNA gyrase subunit B [Listonella pelagia]
          Length = 464

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 280/466 (60%), Positives = 361/466 (77%), Gaps = 3/466 (0%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAE 97
            +GLHHM++EV+DN+IDE+L G+ + I VT++ D S +V D+GRGIPT++H EE +SAAE
Sbjct: 1   GTGLHHMVFEVVDNSIDEALAGHCNDIIVTIHDDNSVSVRDDGRGIPTEMHPEEQVSAAE 60

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    
Sbjct: 61  VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQA 120

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           PL V G   + TGTE+ F PS + FS  +F+YD L  RLRELSFLNS V I L D+R  E
Sbjct: 121 PLAVIGET-DKTGTEIRFWPSEETFSNTEFHYDILAKRLRELSFLNSGVSIKLRDER-EE 178

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCF 276
            +     ++GGI+AFV +L+ +K P++Q        RD+ I+++ AM+WNDGY EN+ CF
Sbjct: 179 DKGDHFMFEGGIQAFVEHLNTNKTPIIQKIFHFDNERDDGITVEFAMQWNDGYQENIYCF 238

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PD
Sbjct: 239 TNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPD 298

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+S VE  + + LS +L E+P EAK +  K++DA+  RDAAR+AR
Sbjct: 299 PKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIENPAEAKTVCTKIIDAARARDAARKAR 358

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 359 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 418

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 419 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 464


>gi|84501601|ref|ZP_00999773.1| DNA topoisomerase IV, B subunit [Oceanicola batsensis HTCC2597]
 gi|84390222|gb|EAQ02781.1| DNA topoisomerase IV, B subunit [Oceanicola batsensis HTCC2597]
          Length = 652

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 244/655 (37%), Positives = 349/655 (53%), Gaps = 22/655 (3%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D+        +YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ E+LDN++DE+
Sbjct: 1   MADDLLTDTAPDTYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A  I V L+ D S TV DNGRG+P D H +  G SA EVI+  LHAGGKF+ KSY+
Sbjct: 60  VAGHATRIEVELHEDYSLTVRDNGRGMPFDPHPKFPGKSALEVILCTLHAGGKFSGKSYE 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ R+  + E  F  G+   PL   G+A N  GT  TF
Sbjct: 120 TSGGLHGVGASVVNALSDSMVVQVARDRKLVEQRFSRGVPQGPLQEIGAAPNRRGTTTTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P  +IF    F    L   +R  ++L S V+I           P+E T  + GG+  ++
Sbjct: 180 HPDEEIFGHHKFKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETPQEATFHFPGGLADYL 239

Query: 234 SYLDRHKKPLMQSPIRIQ---GSRDNI--SIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                      ++P   +     R  +   ++ A+ W       V  + N +P  +GGTH
Sbjct: 240 KESLSGAMTYSEAPFAGRVSFQERFGVPGRVEWAINWTPVRDGFVQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  +A+ + I +Y E      +    +  +D   G  +++S  + +P F  QTK++L 
Sbjct: 300 VAGFWAAVLKGIKAYGELVN--NRKAAQITREDLMAGGCALVSCFIREPEFVGQTKDRLA 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           + E   +VE+ V D    WL      A  I+  ++  +      RR    T+RK      
Sbjct: 358 TVEAHRLVENAVRDHFDNWLAADTKSAGAILDFLVLRA-EERQRRRQEKETQRKTATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DCS  +   +ELFLVEGDSAGGSAK  R R+ QA+LPLRGKILNV  A  +K+
Sbjct: 417 RLPGKLTDCSATNRDGTELFLVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASNKI 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++QEI  L  A+G G+G   F+I+ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 477 GTNQEINDLCQAMGVGLG-TKFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFSQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G    YV+DE   + +L      +           G +   D
Sbjct: 536 IDKGHLYLACPPLFRLTQGAHRVYVQDEAERDVWLEKGLGGKGKIEVSRFKGLGEMDAKD 595

Query: 587 LRN---FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+     +     I   + +  P      +E+ +           + N   A  L
Sbjct: 596 LKETTMDVKTRKLIRVTVDEEAPGETGDLVERLMGKKPELRFQYIQENARFAEGL 650



 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 5/148 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I    +      +  L     ++ +   
Sbjct: 504 YDKIIIMTDADVDGAHIASLLMTFFFSQMRPLIDKGHLYLACPPLFRLTQGAHRVYVQDE 563

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I + R+KGLGEM+A  L ETT++  TR L+RV + + +  +  D
Sbjct: 564 AERDVWLEKGLGGKGKIEVSRFKGLGEMDAKDLKETTMDVKTRKLIRVTVDEEAPGETGD 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LD 802
           L  RLMG + E R ++IQEN+  +  LD
Sbjct: 624 LVERLMGKKPELRFQYIQENARFAEGLD 651


>gi|146276459|ref|YP_001166618.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|145554700|gb|ABP69313.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 663

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 236/576 (40%), Positives = 331/576 (57%), Gaps = 16/576 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++++   Q  +YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ E+LDN++DE++
Sbjct: 13  MANDLLSGQPETYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEAV 71

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116
            G+A  I V L+ D S T+ DNGRGIP D H +  G SA EVI+  LHAGGKF+ K+Y+ 
Sbjct: 72  AGHATRIEVELHADHSVTIRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQT 131

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS  +++ + R   ++  SF  GI   P+ + G+A N  GT +TF 
Sbjct: 132 SGGLHGVGASVVNALSDTMRVEVARNRELWVQSFARGIAQGPVKMVGAASNRRGTTITFH 191

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVS 234
           P  +IF    F    L    R  ++L S V+I           P+E    + GG+  +++
Sbjct: 192 PDPEIFGHLQFKPARLMKMARSKAYLFSGVEIRWKSAIPDGDTPQEAVFHFPGGLGDYLA 251

Query: 235 YLDRHKKPLMQSPIRIQ---GSRDNI--SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                     + P   +     +  +  S++ A+ W       +  + N +P  +GGTH 
Sbjct: 252 EQLSGASTYAEKPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHE 311

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG  SA+ + I +Y E      +    +  +D   G ++++S+ + +P+F  QTK++L +
Sbjct: 312 SGFWSAILKGIRAYGE--LVKNRKADQITREDMLAGGSALISVFIREPQFVGQTKDRLST 369

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            E   +VE+ V D    WL  +   A  I+  ++         RR    T+RK       
Sbjct: 370 EEAAKLVENAVRDHFDNWLAANTKSAGAILDFLVLR-AEERLRRRQEKETQRKSATKKLR 428

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS      +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNV  A   KM 
Sbjct: 429 LPGKLVDCSATARDGTELFIVEGDSAGGSAKMARDRTLQALLPLRGKILNVLGAASGKMG 488

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++ EI  L  ALGTG+G   F+I+ LRY KIIIMTDADVDGAHI +LL+TFFF QM  LI
Sbjct: 489 ANAEINDLCLALGTGMG-TRFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLI 547

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
             G LY+  PPLY +T+G    YV D+   E +L  
Sbjct: 548 DRGHLYLACPPLYRLTQGAKRLYVADDVEKELWLAK 583



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            ++      D ++      V    +      F F      I    +      +  L    
Sbjct: 507 RFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPPLYRLTQGA 566

Query: 712 DKIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
            ++ +         +   +G KG I +QR+KGLGEM+A  L +TT+NP TR L+RV I +
Sbjct: 567 KRLYVADDVEKELWLAKGLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATRKLIRVSIDE 626

Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
               +  DL  RLMG + E R ++IQEN+     LD+
Sbjct: 627 DEPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 663


>gi|328543970|ref|YP_004304079.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [polymorphum gilvum SL003B-26A1]
 gi|326413714|gb|ADZ70777.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Polymorphum gilvum SL003B-26A1]
          Length = 703

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/660 (36%), Positives = 356/660 (53%), Gaps = 28/660 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  I V 
Sbjct: 62  EDYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVVDNSMDEAVAGHATWIDVA 120

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ DG  TV+DNGRGIP D H +    SA EVIMT LHAGGKF+ K Y+ SGGLHGVGVS
Sbjct: 121 LDADGYLTVTDNGRGIPVDPHPKFKDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVS 180

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L + + R   +Y  +F  G    PL + G   N  GT V F P   IF    
Sbjct: 181 VVNALSEELVVEVARARKLYRQTFRRGHPVGPLELIGDTQNRRGTMVRFRPDPQIFGPGA 240

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDRH 239
            F    L    R  ++L   V+I          ++   P E    + GG+  F++     
Sbjct: 241 RFTPSRLLKMARSKAYLFGGVEIRWHCDPALIAEQDQTPAEAVFHFPGGLRDFLTERLAG 300

Query: 240 KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           ++ +++     +  +   + S++ A+ W  G    +  + N +P  +GGTH +GLR AL 
Sbjct: 301 ERRVVEDLFAGRTDKAGSHGSVEWAVTWFAG-DGFLNSYCNTVPTPEGGTHEAGLRYALL 359

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y +           + GDD       +LS+ + +P F  QTK+KL ++E   + E
Sbjct: 360 RGLKAYADLVGNK--KGGLITGDDVMTSAGGMLSVFIREPEFVGQTKDKLATNEATRITE 417

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P +A  +++ V+D +  R   R+ +D   RK  +    LPGKLADC
Sbjct: 418 NAIRDAFDHWLTASPNQANRLLEWVIDRAEERLRRRQEKD-VARKTAVRKLRLPGKLADC 476

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S    + +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  DK+ ++Q+I  L
Sbjct: 477 SANQSEGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVANAGRDKLAANQQIADL 536

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  +  +    LRY K+IIMTDADVDGAHI +LL+TFF+R+MP LI N  L++ 
Sbjct: 537 VQALGCGT-RSQYRDTDLRYEKVIIMTDADVDGAHIASLLITFFYREMPELIRNSHLFLA 595

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
            PPLY +++G +  Y +D+   ++ L +             KG+     +   + +    
Sbjct: 596 VPPLYRLSQGGTTVYARDDAHKDELLASVFKGRSKIEIGRFKGL--GEMMPAQLKETTMA 653

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                       K  + + ++      E+   +   + +K   R +FI E +E +    I
Sbjct: 654 PD----------KRTLMRVMVEEEDEAETRSAVERLMGNKPEARFSFIQEHAEFAHDLDI 703



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  +     ++   ++A+ +  +   +   +  +    + ++      V    +    
Sbjct: 516 ILNVANAGRDKLAANQQIADLVQALGCGTRSQYRDTDLRYEKVIIMTDADVDGAHIASLL 575

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I ++ +      +  L   G  +          LL ++F  GR  I + 
Sbjct: 576 ITFFYREMPELIRNSHLFLAVPPLYRLSQGGTTVYARDDAHKDELLASVFK-GRSKIEIG 634

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD--DLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT+ PD R+L+RV + +  +A+      RLMG++ E R  FIQE+
Sbjct: 635 RFKGLGEMMPAQLKETTMAPDKRTLMRVMVEEEDEAETRSAVERLMGNKPEARFSFIQEH 694

Query: 796 SLPS-ALDI 803
           +  +  LDI
Sbjct: 695 AEFAHDLDI 703


>gi|320533167|ref|ZP_08033889.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134627|gb|EFW26853.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 675

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 281/649 (43%), Positives = 382/649 (58%), Gaps = 35/649 (5%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MSD     N  Y A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L 
Sbjct: 1   MSDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I VT+  DG   VSDNGRGIP D H  E     EV+MT LHAGGKF    Y VSG
Sbjct: 60  GYCDHIEVTILADGGVRVSDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLP 177
           GLHGVG+SVVNALS+ +   ++R+G ++ MSF + G     L V G     TGT  TF P
Sbjct: 120 GLHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITEL-VKGETTESTGTTQTFYP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--------------------RSPE 217
              IF   DF+Y+TL+ R ++++FLN  ++I+L D+                        
Sbjct: 179 DPSIFETVDFDYETLRRRFQQMAFLNKGLRITLTDERIGVQDAGDEIAGDDSAPDAPEVG 238

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQ-----GSRDNISIDLAMRWNDGYH 270
            R  +  Y+ G+  +V++L++ KK        I  +     G   +IS+++AM+W   Y 
Sbjct: 239 FRTDSYCYEHGLRDYVAFLNKSKKAELIHPEIIDFEAEQSLGETHSISLEIAMQWTSAYS 298

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  + N I   +GGTH  G R+ALT  +  Y       K+   ++ GDD REG T+V+
Sbjct: 299 ESVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVI 358

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ +P+F  QTK KL ++E R+ V+  V   L  WL+ HP +A+ I+ K   A+  R 
Sbjct: 359 SVKLSEPQFEGQTKTKLGNTEARTFVQQTVYGQLGDWLDSHPSDARAIITKASQAAAARL 418

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+ TRRKGVL+ AS+PGKL DCS +    SE+F+VEGDSAGGSA  GR  E+QAI
Sbjct: 419 AARKAREATRRKGVLESASMPGKLRDCSSKSAADSEIFIVEGDSAGGSAVGGRDPEHQAI 478

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           +P+RGKILNVE+AR D+ LSS  I +LITA GTGIG+D FDI KLRY KI+IM DADVDG
Sbjct: 479 MPIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDITKLRYGKIVIMADADVDG 537

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            HI TLLLT  FR M  LI +G  YI  PPLY +    +       ++  D L+     +
Sbjct: 538 QHIATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLATGQEK 597

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
              L  D    I +      ++D    +  +        +  +++A  +
Sbjct: 598 GRRLPKDGG--IQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADA 644



 Score =  143 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LWETT++P TR L +V + +A+ AD+ F+ LMGD+VE RR FIQ N
Sbjct: 607 IQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADADETFAILMGDDVEQRRSFIQRN 666

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 667 ASDVRFLDI 675


>gi|82539825|ref|XP_724272.1| DNA topoisomerase II [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478863|gb|EAA15837.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
          Length = 930

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 278/894 (31%), Positives = 419/894 (46%), Gaps = 184/894 (20%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YDA  I IL+GL+AV+KRP MYIG+TD   GLH +++E++DNA+DE      + I V 
Sbjct: 111 NNYDAKDIVILEGLEAVRKRPGMYIGNTDS-KGLHQILFEIVDNAVDEYNNHECNQIKVI 169

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG--------------------- 106
           ++ D S T+ DNGRGIP D+H++   SA E ++T LH+G                     
Sbjct: 170 IHNDESITIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFLDDDINMIVNEEKGKQKK 229

Query: 107 ----------------GKFNQKS-------------------YKVSGGLHGVGVSVVNAL 131
                            K N  S                   YK S GLHGVG+SV NAL
Sbjct: 230 TKKEVQETGNSNISNNSKGNDTSVDGTKENKDKNKTNENLQKYKYSSGLHGVGLSVSNAL 289

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYD 190
           S+++K+ + R+  IY +    G +   L V        GT++ + P + IF      N +
Sbjct: 290 STFMKVNVFRDNKIYNIELEKGKVVKELNVQDCPIKKRGTQIHYKPDNTIFKTNIKHNSE 349

Query: 191 TLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREITMFYKGGI 229
            +++RL +L++LN  +     D+R+                            + ++GG+
Sbjct: 350 FIKNRLHQLAYLNDKLTFYFYDERNSNKGNSDKVSENVENNSYTKLDNYEYEIIKHEGGL 409

Query: 230 EAFVSYLDRHKKPLMQ---SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDG 285
           + ++  L ++K  + +     I I   + NI +DL ++W  + Y+EN+L F NN+   DG
Sbjct: 410 DEYMEKLTKNKTNIFKTNNKVISISCFQKNIHVDLKLKWVTNQYNENILSFVNNVNTIDG 469

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH+  ++ A++R I   V+K+   K +  ++ G+  REG T++LSIKM +P F  QTK 
Sbjct: 470 GTHVDAMKYAISRSINYNVKKNETIK-NFVNIPGEYIREGLTAILSIKMNNPEFEGQTKT 528

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL S  ++ ++ES + + LS   +  P     I  K L A    + A+ ARDL R K   
Sbjct: 529 KLGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSKNNQ 588

Query: 406 DIASL-PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER-A 463
             +++ PGKL DC   D  K+E+F+VEGDSA GSAKQ R+RE QAILPL+GKILNVE+  
Sbjct: 589 YYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIK 648

Query: 464 RFDKMLSSQEIGTLITALGT---------------------GIGQDSFDINKLRYHKIII 502
              K+  + E+ +LITA+G                       I +++F    LRY KIII
Sbjct: 649 NNKKIFENIELKSLITAIGLNVNYDNSKTGKSNTNKRNDNKDIKKNNFIDTSLRYGKIII 708

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDG HI  LLLTF +R    +I NG +Y+  PPLY +T  K              
Sbjct: 709 MTDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKVTYNKF------------- 755

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                             VISK ++       +         +   D    E   +  + 
Sbjct: 756 ----------FDNNIKDSVISKFNVTTKASKYI--------IHTYSDSELNELLALLDMD 797

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI-LVKRIARGVQEQFVLEGSS 681
             +  +  N+    K  N LN   + +      +  N D    +  +   Q    +    
Sbjct: 798 KAQILENKNILKKRKKENFLNGQGKLNITHDDENNTNFDPQNDQDNSEQNQTNSFISNDV 857

Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           IFS   KY                                              +QR+KG
Sbjct: 858 IFSSSKKY---------------------------------------------EIQRFKG 872

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           LGEM A QLW TT++P  R L+RV ++DA +A++L + LMG++ + R++FI +N
Sbjct: 873 LGEMMADQLWSTTMDPQVRKLIRVTVSDAIKANNLINSLMGEDSKSRKDFIIKN 926


>gi|185179126|ref|ZP_02964846.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024055|ref|ZP_02996806.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518297|ref|ZP_03003818.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|225550687|ref|ZP_03771636.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551068|ref|ZP_03772014.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|184208963|gb|EDU06006.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188019091|gb|EDU57131.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998169|gb|EDU67266.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|225378883|gb|EEH01248.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379841|gb|EEH02203.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 642

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 239/593 (40%), Positives = 362/593 (61%), Gaps = 15/593 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YD ++I+IL+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE +   
Sbjct: 1   MANK-----YDGNAIKILEGLEAVRKRPGMYIGSTSSA-GLHHLVWEIVDNSIDEVMNAN 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S +V D+GRGIP D++ +  IS  E ++T LHAGGKF++ +YK +GGL
Sbjct: 55  AKNINVILHEDNSISVLDDGRGIPVDINSQTKISTVETVLTILHAGGKFDESAYKTAGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALSSWL   + R+  IY+  FIN G +   L V G+    TGT + FLP  
Sbjct: 115 HGVGSSVVNALSSWLICEVYRDQKIYQAKFINGGHIHQSLKVIGTTK-KTGTLIHFLPDP 173

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    FN + ++ RL E +FL   ++I   DK + +          G+  F+ +++  
Sbjct: 174 LIFKNLVFNPNIIKERLHESTFLIKDLKIIFEDKINKKK--YEFINNQGLIDFIKFINET 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KK      I  + + + I +++A +++D  +E ++ F N++   +GG H +  ++ALT  
Sbjct: 232 KKT-FSDVIYFKSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTNV 290

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
           + +Y  K    K+  +++ GDD REG +SV+S+++P+    +  QTK KL + E    V+
Sbjct: 291 VNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416
             + D  S WLEE+  +A  +V + + A   + AA+RAR+ T++ K + +   + GKL  
Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              +DP  +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR   +L ++EI +
Sbjct: 411 AQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M  LI NG +YI
Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             PPLY +T   + ++    + +E   + +             G ++ + L  
Sbjct: 530 ALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582



 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750
           I +  I      +  L    +K        + LD +    +K   +QRYKGLGEMNA QL
Sbjct: 522 IENGNIYIALPPLYKLTNKNNKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +ETT++P  R LLRV I D  QA+   + LMG++V  RR++I  N
Sbjct: 581 FETTMDPSKRLLLRVNINDILQAERQINTLMGNDVSIRRQWIDNN 625


>gi|320528087|ref|ZP_08029252.1| DNA topoisomerase IV, B subunit [Solobacterium moorei F0204]
 gi|320131435|gb|EFW24000.1| DNA topoisomerase IV, B subunit [Solobacterium moorei F0204]
          Length = 639

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 257/642 (40%), Positives = 368/642 (57%), Gaps = 18/642 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + YD +SIQIL+GL+AV+KRP MYIG TD   GLHH+I+E++DN+IDE+L GY   I +T
Sbjct: 3   NRYDDNSIQILEGLEAVRKRPGMYIGSTD-TRGLHHLIWEIVDNSIDEALNGYGKKIQIT 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGVGVS 126
           L  DGS TV D GRG+P   H   G++  +VI T LHAGGKF+ +  YK +GGLHGVG S
Sbjct: 62  LEADGSVTVQDEGRGMPIGQHAS-GVNTLQVIFTVLHAGGKFSSEGGYKTAGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS WL + +  +G +  M F   G     L   G   N TG+ V F P   IFS  
Sbjct: 121 VVNALSEWLIVEVAHDGELVRMEFAAGGKKIGKLEHLGKT-NRTGSTVRFKPDPRIFSTT 179

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           ++ YD +  R RE +FL S + + + DKR+ +    T  Y+ G+ AF+ YL   +  LM 
Sbjct: 180 EYKYDVVCERAREEAFLLSGIAMVVSDKRNKKNETETYLYEDGLTAFLGYLHEDRNVLM- 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +P++  G    I ++ A ++ D Y EN   F N +   DGGTH +G + A T+ I  Y  
Sbjct: 239 NPVKFSGEASGIQVEAAFQYTDDYQENTYSFVNLVRTGDGGTHEAGFKGAFTKAINDYAR 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDG 363
           K    K   +++ G D REG T++LS+ +P+   +F  QTK KL + + ++ VE+ V++ 
Sbjct: 299 KYGLLKAKDKNLEGGDVREGLTTILSVSVPEGLLQFEGQTKSKLGTPQAKTAVEAVVSEK 358

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLADCSERD 421
           LS WLEE+  ++  +V+K+L AS+ R AAR+ARD  R+   +        GKLA    +D
Sbjct: 359 LSFWLEENRNQSDTLVRKMLKASLARIAARKARDEIRKGKRVGKGEKVLSGKLAPAQTKD 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            +  ELFLVEGDSAGGSAKQGR    QAILPLRGK+LN E+     +  ++E+ TLI  L
Sbjct: 419 ARVKELFLVEGDSAGGSAKQGRDSHYQAILPLRGKVLNTEKCTLSDIEKNEELNTLIYTL 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G+G   FD  +  Y K+IIMTDAD DG+HI+ LLLTFF+R M  L+  G +YI  PPL
Sbjct: 479 GAGVG-PDFDYKESNYGKVIIMTDADDDGSHIQILLLTFFYRYMRPLLEQGMIYIALPPL 537

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +T+GK+ +YV  ++ L+   + + L +         G ++   L         +D   
Sbjct: 538 YKVTKGKTTEYVYSDQELDA--LRRKLGKVEIQRYKGLGEMNATQLWET-----TMDPSQ 590

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           +          ++      V   +  +     +   ++  L 
Sbjct: 591 RTLIKVGISDGVKAERRVTVLMGDKAELRRKWIEDNVSFTLE 632



 Score =  138 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 4/117 (3%)

Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF-SIGRKGISMQR 738
            + +F  +Y R +    +    L  L  +  G   +       LD +   +G+  + +QR
Sbjct: 512 LLLTFFYRYMRPLLEQGMIYIALPPLYKVTKGKTTEYVYSDQELDALRRKLGK--VEIQR 569

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           YKGLGEMNA+QLWETT++P  R+L++V I+D  +A+   + LMGD+ E RR++I++N
Sbjct: 570 YKGLGEMNATQLWETTMDPSQRTLIKVGISDGVKAERRVTVLMGDKAELRRKWIEDN 626


>gi|225352385|ref|ZP_03743408.1| hypothetical protein BIFPSEUDO_04002 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156892|gb|EEG70261.1| hypothetical protein BIFPSEUDO_04002 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 705

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 257/607 (42%), Positives = 363/607 (59%), Gaps = 28/607 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D +    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 39  DTLAPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 97

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG   V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 98  HIEVTILPDGGVRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 157

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG---NDTGTEVTFLPSS 179
           VG+SVVNALS+ + + ++R+G  +  ++I+      L   G        TGT VTF    
Sbjct: 158 VGISVVNALSTRVNIEVRRQGFHWTQTYIDQKPTARLAK-GEPMGEDESTGTSVTFWADG 216

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI-----------------DKRSPEPREIT 222
            IF    ++++TL++R ++++FLN  +++SL                  D   P+ + +T
Sbjct: 217 AIFETTTYDFETLRNRFQQMAFLNKGLKLSLTDLREPDQAGDEVAGESDDNAEPKHQTVT 276

Query: 223 MFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278
             Y  GI+ +V YL + +K        I  +    +  IS ++AM+W   Y E V  F N
Sbjct: 277 YQYNDGIKDYVDYLVKSRKATPVEPDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFAN 336

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALT  +  Y  +    K    ++ GDD REG T+V+S+K+  P+
Sbjct: 337 TISTTEGGTHEEGFRAALTSLVNRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTTPQ 396

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ 
Sbjct: 397 FEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDSHPSEAKNIIQKAIEASRARLAAKKAREN 456

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKIL
Sbjct: 457 TRRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKIL 516

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N ERA  D+M+ S+ I +LITA+G G G+D FD+NK+RYHK+IIM DADVDGAHI TL L
Sbjct: 517 NTERASLDRMMKSETIESLITAVGGGYGED-FDLNKVRYHKVIIMADADVDGAHIATLNL 575

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCD 577
           T FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       +
Sbjct: 576 TLFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKSAGRQLPKGE 635

Query: 578 SKGVISK 584
                  
Sbjct: 636 GIQRYKG 642



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++PD R L +V+I DA+ AD+ 
Sbjct: 618 DRVLAEGKSAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRILKQVQIEDAAAADET 677

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 678 FSMLMGDEVEPRRLFIQRNARNV 700


>gi|212715155|ref|ZP_03323283.1| hypothetical protein BIFCAT_00041 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661836|gb|EEB22411.1| hypothetical protein BIFCAT_00041 [Bifidobacterium catenulatum DSM
           16992]
          Length = 705

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 257/607 (42%), Positives = 364/607 (59%), Gaps = 28/607 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D +    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 39  DTLAPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 97

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG   V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 98  HIEVTILPDGGVRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 157

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG---NDTGTEVTFLPSS 179
           VG+SVVNALS+ + + ++R+G  +  ++IN    + L+  G        TGT VTF    
Sbjct: 158 VGISVVNALSTRVDIEVRRQGFHWTQTYINQKPTSRLLK-GEPMGEDESTGTSVTFWADG 216

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI-----------------DKRSPEPREIT 222
            IF    ++++ L++R ++++FLN  +++SL                  D   P+ + +T
Sbjct: 217 AIFETTTYDFEILRNRFQQMAFLNKGLKLSLTDLREPDQAGDEVAGDGDDNAEPKHQTVT 276

Query: 223 MFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278
             Y  GI+ +V YL + +K        I  +    +  IS ++AM+W   Y E V  F N
Sbjct: 277 YQYNDGIKDYVDYLVKSRKATPIEPDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFAN 336

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALT  +  Y  +    K    ++ GDD REG T+V+S+K+  P+
Sbjct: 337 TISTTEGGTHEEGFRAALTSLVNRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTTPQ 396

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ 
Sbjct: 397 FEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDSHPSEAKNIIQKAIEASRARLAAKKAREN 456

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKIL
Sbjct: 457 TRRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKIL 516

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N ERA  D+M+ S+ I +LITA+G G G+D FD+NK+RYHK+IIM DADVDGAHI TL L
Sbjct: 517 NTERASLDRMMKSETIESLITAVGGGYGED-FDLNKVRYHKVIIMADADVDGAHIATLNL 575

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCD 577
           T FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L     +       +
Sbjct: 576 TLFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKAAGRQLPKGE 635

Query: 578 SKGVISK 584
                  
Sbjct: 636 GIQRYKG 642



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+       KG  +QRYKGLGEM+  +LWETT++PD R L +V+I DA+ AD+ 
Sbjct: 618 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRILKQVQIEDAAAADET 677

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMGDEVEPRR FIQ N+   
Sbjct: 678 FSMLMGDEVEPRRLFIQRNARNV 700


>gi|146340513|ref|YP_001205561.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. ORS278]
 gi|146193319|emb|CAL77335.1| DNA topoisomerase IV, subunit B [Bradyrhizobium sp. ORS278]
          Length = 691

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 241/655 (36%), Positives = 348/655 (53%), Gaps = 26/655 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A  I 
Sbjct: 44  SEGEYTARDIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIE 102

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L+  G  TV+DNGRGIP D H +    SA E+IM  LHAGGKF+ K Y+ SGGLHGVG
Sbjct: 103 VELDAQGFLTVTDNGRGIPIDPHPKFPKKSALEIIMCTLHAGGKFDSKVYETSGGLHGVG 162

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           +SVVNALS+ L++ + R   +Y M F  G     L   G A N  GT+V F P   IF +
Sbjct: 163 ISVVNALSTRLEVEVARNQKLYRMIFERGHPKGKLEEVGKAPNRRGTKVRFQPDPTIFGA 222

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I                 E T  + GG++ +++   
Sbjct: 223 KATFKPQRLFKMARSKAYLFGGVEIRWKCDPSLLKGIEDVQPEATFHFPGGLKDYLAAAI 282

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                +       +  R   +   + A+ W       +  + N IP  DGGTH SG+RSA
Sbjct: 283 HADTLVHPDIFAGKSGRTGGHGGCEWAVAWTADADGFLSSYCNTIPTPDGGTHESGIRSA 342

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E+     K   ++  +D   G   +LS+ + +P F  QTK++L ++E + +
Sbjct: 343 LLRGLKDHAERVGQ-GKRSANITSEDIMAGAAIMLSVFVREPEFQGQTKDRLATAEAQRI 401

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  V D    WL  +P++A  ++  V++        RR    T RK       LPGKLA
Sbjct: 402 VEQAVKDPFDHWLSGNPVQANRLLDFVVER-AEERIRRRQEKETARKTATKKLRLPGKLA 460

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC++   + SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK+ ++ ++ 
Sbjct: 461 DCTDAGTEGSELFIVEGDSAGGSAKQARDRKKQAVLPLRGKILNVASAGKDKLTANAQLA 520

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L+ A+G G G  S+    LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI  G LY
Sbjct: 521 DLVMAIGAGTG-TSYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLY 579

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +  PPLY +T G    Y +D+   ++ L  +  +         KG+     +   + +  
Sbjct: 580 LAVPPLYRLTHGSKTFYARDDAHRDELLRREFNANAKVEIGRFKGL--GEMMPAQLKET- 636

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                      +  K  + + ++       +   +   + +K   R  FI+EK+E
Sbjct: 637 ---------TMDPAKRTLLRVMLLADDRDGTADSVERLMGTKAEARFAFISEKAE 682



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 7/190 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S  +  ++  ++LA+ +  I   +  S+         ++      V    +    
Sbjct: 502 ILNVASAGKDKLTANAQLADLVMAIGAGTGTSYREEDLRYQRIIIMTDADVDGAHIASLL 561

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F +    + I    +      +  L                + +         + + R
Sbjct: 562 ITFFYRQMPRLIDEGHLYLAVPPLYRLTHGSKTFYARDDAHRDELLRREFNANAKVEIGR 621

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM  +QL ETT++P  R+LLRV +   D     D   RLMG + E R  FI E +
Sbjct: 622 FKGLGEMMPAQLKETTMDPAKRTLLRVMLLADDRDGTADSVERLMGTKAEARFAFISEKA 681

Query: 797 LPSA---LDI 803
             ++   LD+
Sbjct: 682 EFASDELLDV 691


>gi|117924029|ref|YP_864646.1| DNA topoisomerase IV subunit B [Magnetococcus sp. MC-1]
 gi|117607785|gb|ABK43240.1| DNA topoisomerase IV subunit B [Magnetococcus sp. MC-1]
          Length = 649

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 237/614 (38%), Positives = 338/614 (55%), Gaps = 12/614 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D   + SYDA  I++L+GL+ ++KRP MYIG TD    LHH++ EVLDNA+DE+ EG+AD
Sbjct: 7   DGAMSESYDASQIEVLEGLEGIRKRPGMYIGGTD-LRALHHLVAEVLDNAMDEAGEGHAD 65

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            IT+TL+ DGS +V DNGRGIP   H    G SA EV+ T LH+GGKFN  +Y  S GLH
Sbjct: 66  KITLTLHKDGSVSVLDNGRGIPVAPHPRYPGQSALEVVFTTLHSGGKFNNDAYATSAGLH 125

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGV  V ALS W  +++ R+G ++   F  G ++ P+ V G       T V F P  +I
Sbjct: 126 GVGVCAVTALSVWTDVQVHRDGYVWNARFSRGKVETPV-VRGDESRRRSTRVQFQPDPEI 184

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH-- 239
           F     N D L    R  ++L   V++++  +   E          G+  F+  + +   
Sbjct: 185 FPSTILNPDRLIEMCRSRAYLQRGVRMTVKLEAKGEEHLFHF--PNGLSDFIREISKDSR 242

Query: 240 --KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +   +  I   G      ++ A+ W++     +    N +P  DGG H +G R+AL 
Sbjct: 243 LVVEDPFEGRITGLGDAGKSRVEWAILWDEVDESRLRSHCNTVPTPDGGVHEAGFRAALL 302

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +  + +          ++ G+D   G   V+S+ +PDP+FS QTK+KL +  V  +VE
Sbjct: 303 RGMRDFADSRNMMP-KNVALTGEDIMGGMMGVISLFIPDPQFSGQTKDKLTNGYVSRMVE 361

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + D L  WL   P  A  +V  +++ +  R   R+   L +RK      +LPGKL DC
Sbjct: 362 SAIKDNLDHWLHGQPERATRLVGAMIERAQERINRRKKTPLVKRKSPTSRLTLPGKLTDC 421

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            + DP  +ELF+VEGDSAGGSAKQ R R  QAILPLRGKILNVE+A  +K   + E+  L
Sbjct: 422 IKTDPDFTELFIVEGDSAGGSAKQARDRHTQAILPLRGKILNVEQANSEKFEKNAEVQAL 481

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
            TA+G G+G+  FDI  LRY ++IIMTDADVDGAHI +LLLTFF+R MP L+H G LY+ 
Sbjct: 482 TTAIGCGVGRA-FDITALRYGRVIIMTDADVDGAHIASLLLTFFYRFMPDLVHRGHLYLA 540

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPL+ +T G+   Y  DE   E  +   + S+       S+         + + +   +
Sbjct: 541 QPPLFKVTVGRESVYALDEHEKERVINRLTRSKPNAKVEISRFKGLGEMPPSQLKE-TTM 599

Query: 598 DKLIKDFYPNHDKT 611
               +         
Sbjct: 600 QPSSRRLLRVMVDD 613



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + + R+KGLGEM  SQL ETT+ P +R LLRV + D     D F RLMG     R +FIQ
Sbjct: 578 VEISRFKGLGEMPPSQLKETTMQPSSRRLLRVMVDDDHVTSDTFDRLMGKRPAERFKFIQ 637

Query: 794 ENSLPS--ALDI 803
           E++  +  ALDI
Sbjct: 638 EHADFAKGALDI 649


>gi|118444670|ref|YP_878399.1| DNA topoisomerase IV subunit B [Clostridium novyi NT]
 gi|118135126|gb|ABK62170.1| DNA topoisomerase IV subunit B [Clostridium novyi NT]
          Length = 652

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 221/609 (36%), Positives = 347/609 (56%), Gaps = 23/609 (3%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS       +SYD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   
Sbjct: 1   MSLIQEKNKNSYDVTDLTSLEKLEPVRVRPGMYIGST-GTKGLHHCIWEILDNSIDEIAN 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY + + + LN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKFN K+YK SG
Sbjct: 60  GYGNKVVLILNKDKSVTIMDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNKNYKTSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGN 167
           GLHGVG +VVNALS WL++ + ++G+I++  F             G    PL + G    
Sbjct: 120 GLHGVGAAVVNALSEWLEVEVYQKGHIHKQRFEYAEDKSLNKKMPGTPIFPLKIVGDTE- 178

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++TF P  ++FS  +F ++ +  RL+EL+F N  + + + D+R  E  E     + 
Sbjct: 179 RTGTKITFKPDKEVFSTTEFKFEVIDERLQELAFQNKGITLVIKDERKEEVIEKEYHSER 238

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           G+  F+ YL+  K P+ + P+  +G +      +  ++ M++ D   EN+  + NNIP  
Sbjct: 239 GLLDFIDYLNESKIPIHKDPLLYEGEKEVNSIKVYCEVCMQFTDSSTENIASYVNNIPTT 298

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           + GTH +G ++ +TR    + +K    K+  +   GDD REG T++L +K+ +P F  QT
Sbjct: 299 ESGTHETGFKTGMTRAFKEWAKKLNIVKEKDKGFEGDDLREGMTAILRVKISNPIFEGQT 358

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL ++E  +V+       +  W+E++   A  I+   + A+  R+  ++  D  ++K 
Sbjct: 359 KTKLGNNEAYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKKV 418

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
               A L GK++ C+ + P+  E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ 
Sbjct: 419 GKGTAPLAGKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQ 478

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R + +L+S+E+     A+GTG+  ++++ + L+Y KIII++DADVDG HIRTL +T+ +R
Sbjct: 479 RLENVLASEELKLFNAAIGTGV-LENYNEDDLKYDKIIILSDADVDGYHIRTLWITYIYR 537

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKG 580
            M SLI NG LYI  PPLY + +      +      ++ L +         +       G
Sbjct: 538 YMRSLITNGHLYIALPPLYKVYKNSKKGEISRYAYSDEELASAKKEIGKGALIQRYKGLG 597

Query: 581 VISKNDLRN 589
            ++ + L +
Sbjct: 598 EMNPDQLWD 606



 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 7/116 (6%)

Query: 687 SKYKRIF--SNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISMQRYK 740
            +Y R    +  +      +  +  N  K +I+        L      IG KG  +QRYK
Sbjct: 536 YRYMRSLITNGHLYIALPPLYKVYKNSKKGEISRYAYSDEELASAKKEIG-KGALIQRYK 594

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           GLGEMN  QLW+TTLNP+TR+L ++ I DA++A+ + S LMGD VEPRR ++ + +
Sbjct: 595 GLGEMNPDQLWDTTLNPETRTLQQITIEDAAKAEKMISLLMGDVVEPRRNYMYKYA 650


>gi|255264201|ref|ZP_05343543.1| DNA topoisomerase IV, B subunit [Thalassiobium sp. R2A62]
 gi|255106536|gb|EET49210.1| DNA topoisomerase IV, B subunit [Thalassiobium sp. R2A62]
          Length = 652

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 240/655 (36%), Positives = 341/655 (52%), Gaps = 22/655 (3%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D++     + +YDA SI++L+GL+ V+ RP MYIG TD E  LHH++ EVLDN++DE+
Sbjct: 1   MADDLLGAAASDTYDASSIEVLEGLEPVRLRPGMYIGGTD-ERALHHLVAEVLDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A  I V L+ D S T+ DNGRGIP D H +    SA EVI+  LHAGGKFN K+Y+
Sbjct: 60  VAGHATRIEVELHTDYSVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFNGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ R+  +YE  F  GI   P+   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGASVVNALSDIMIVQVARDRELYEQRFSRGIPQGPVKKIGAAPNRRGTTVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFV 233
               +IF    F    L   +R  ++L S V+I           P E T  + GG+  ++
Sbjct: 180 HADEEIFGSHRFKPSRLLKSIRSKAYLFSGVEIRWKTAIVDGDTPMEATFHFPGGLADYL 239

Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                      + P        +       ++ A+ W       +  + N +P  +GGTH
Sbjct: 240 RETLGQASTYAEQPFSGIVEFQEKFNVPGKVEWAINWTPSREGFIQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G  +A+ + I +Y E    S +   S+  +D   G  +++S  + +P F  QTK++L 
Sbjct: 300 EAGFWAAILKGIRAYGE--LVSNRKASSITREDLVAGGCALVSCFIREPEFVGQTKDRLA 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E + +VE+ V D    WL      A  I+  ++         RR    T RK      
Sbjct: 358 TTEAQRMVENAVRDHFDNWLAADTKSAGAILDYLILR-AEERLRRRQEKETARKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DCS      +ELF+VEGDSAGGSAK  R R+ QA+LPLRGKILNV  A   K+
Sbjct: 417 RLPGKLVDCSSNTRDGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+ EI  L  ALG G+G   F+++ LRY K+IIMTDADVDGAHI  LL+TFFF QM  +
Sbjct: 477 GSNAEISDLTQALGVGLG-TKFNVDDLRYDKVIIMTDADVDGAHIAALLMTFFFTQMRPM 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G    Y  DE   E ++      +           G +   D
Sbjct: 536 IDAGHLYLACPPLFRLTQGAKRVYCIDELEKERHMDKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L++          I   I +  P      +E+ +           + N     +L
Sbjct: 596 LKDTTMNPKTRKLIRVTIDEDLPGETSDLVERLMGKKPEMRFQYIQENARFVEEL 650



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 17/162 (10%)

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++      D ++      V    +      F F      I +  +      +  L     
Sbjct: 497 FNVDDLRYDKVIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLYLACPPLFRLTQGAK 556

Query: 713 KIKITGPCSLLDTIFSI-------GRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
           ++        +D +          G KG I + R+KGLGEM+A  L +TT+NP TR L+R
Sbjct: 557 RVYC------IDELEKERHMDKGLGGKGKIDVSRFKGLGEMDAKDLKDTTMNPKTRKLIR 610

Query: 765 VKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           V I +    +  DL  RLMG + E R ++IQEN+     LD+
Sbjct: 611 VTIDEDLPGETSDLVERLMGKKPEMRFQYIQENARFVEELDV 652


>gi|86750095|ref|YP_486591.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris HaA2]
 gi|86573123|gb|ABD07680.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris HaA2]
          Length = 684

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 237/598 (39%), Positives = 335/598 (56%), Gaps = 16/598 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             + Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A  I 
Sbjct: 37  AEAGYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIE 95

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L  DG  TVSDNGRGIP D H +    SA EVIM  LHAGGKF+ K Y+ SGGLHGVG
Sbjct: 96  VELGADGYLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGGLHGVG 155

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALSS L++ + R   +Y M F  GI    L   G   N  GT V F P +DIF +
Sbjct: 156 VSVVNALSSLLEVEVARGQQLYRMVFARGIPQGKLESLGKINNRRGTRVRFKPDTDIFGA 215

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I               P E T  + GG++ ++    
Sbjct: 216 KAAFKPQRLFKMARSKAYLFGGVEIRWKCDPELLKGVEDVPPEDTFHFPGGLKDYLGAAI 275

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                +       +  R+  + + + A+ W       +  + N +P  DGGTH SG+RSA
Sbjct: 276 HADTLVHPDIFSGKSGRNGAHGACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGMRSA 335

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E+    K+   S+  +D   G   +LS+ + +P F  QTK++L ++E + +
Sbjct: 336 LLRGLKDHAERVGQGKRA-SSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQKI 394

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + D    WL  +P++A  ++  V++ +      RR      RK  +    LPGKLA
Sbjct: 395 VEQAIKDPFDHWLSGNPVQANKLLDFVVERA-EERLRRRQEKEISRKTAVKKLRLPGKLA 453

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+    + SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK++++ ++ 
Sbjct: 454 DCTNTAAEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASATKDKVVANAQLS 513

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L+ A+G G G  ++    LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI  G LY
Sbjct: 514 DLMQAIGCGTG-VNYREEDLRYARIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLY 572

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +  PPLY +T G    Y +D+   ++ L  +  +         KG+     +   + +
Sbjct: 573 LAVPPLYRLTHGAKTVYARDDAHKDELLKKEFNANAKVDVGRFKGL--GEMMPAQLKE 628



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 7/72 (9%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEPRREFIQE 794
           R+KGLGEM  +QL ETT++P  R+LLRV + D  +   AD +  RLMG + E R  FI +
Sbjct: 614 RFKGLGEMMPAQLKETTMDPARRTLLRVSLLDIDRDGTADSV-ERLMGTKAEARFAFISD 672

Query: 795 NSLPSA---LDI 803
            +  ++   LD+
Sbjct: 673 KAEFASEDLLDV 684


>gi|315940109|gb|ADU56233.1| DNA gyrase subunit B [Nocardia jejuensis]
          Length = 576

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 248/578 (42%), Positives = 356/578 (61%), Gaps = 33/578 (5%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T GE GLHH+I+EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP  +H 
Sbjct: 1   MYIGST-GERGLHHLIWEVVDNSVDEAMAGYATRVDVTLLADGGVEVVDDGRGIPVAMHA 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + G+   EV+MT+LHAGGKF+  SY VSGGLHGVG+SVVNALS+ L+  +  +G  +   
Sbjct: 60  Q-GVPTIEVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRLEADVDVDGYHWTQE 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +      L V G A   TGT + F    +IF    +N++T+  RL+E++FLN  + I+
Sbjct: 119 YKDSKP-GKL-VQGDATKRTGTTIRFWADPNIFETTTYNFETVARRLQEMAFLNKGLTIT 176

Query: 210 LIDK----------------------------RSPEPREITMFYKGGIEAFVSYLDRHKK 241
           L D+                             +P+ +  T  Y GG+E +V +++R K 
Sbjct: 177 LTDERVAENDVTDEVVSDTAEAPKHADENAPAPTPKVKNRTYHYPGGLEDYVKHINRTKT 236

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+  S +   G      +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  + 
Sbjct: 237 PIHNSIVSFSGKGTGHELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVN 296

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y +     K+   ++ GDD REG  +++S+K+ +P+F  QTK KL +++V+  V+   N
Sbjct: 297 KYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTDVKGFVQRACN 356

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ W E +P +AK I++K + ++  R AAR+AR+L RRK   D+  LPGKLADC  +D
Sbjct: 357 EHLTHWFEANPADAKTIMQKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKD 416

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           PK SE+++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA 
Sbjct: 417 PKLSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAF 476

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGI  D FDI KLRYHKI++M DADVDG HI TLLLT  FR M  L+ +G +Y+ +PPL
Sbjct: 477 GTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLVEHGHVYLAQPPL 535

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           Y +   ++       +   D L+   L+   ++  D  
Sbjct: 536 YKLKWQRTEPEFAYSDRERDGLLEAGLAAGKKINKDDG 573


>gi|89114222|gb|ABD61706.1| DNA gyrase subunit B [Acholeplasma modicum]
 gi|89114224|gb|ABD61707.1| DNA gyrase subunit B [Acholeplasma modicum]
          Length = 547

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 249/548 (45%), Positives = 359/548 (65%), Gaps = 5/548 (0%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           T G  GLHH+++E++DN+IDE+L GYAD IT+ +       V+DNGRGIP D+H      
Sbjct: 1   TTGSDGLHHLVWEIVDNSIDEALGGYADEITLEILKGEVIRVTDNGRGIPVDIHPHTQKP 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           A E I+T LHAGGKF+ +SYKVSGGLHGVG SVVNALS W  + + R    Y   +  G+
Sbjct: 61  AVETILTTLHAGGKFDGESYKVSGGLHGVGASVVNALSEWFTVNVHRNNKNYFQKYARGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDK 213
               L   GS+ + TGT + F     IF     ++Y+ L+HR+++L+FLN  ++IS+ D 
Sbjct: 121 TQTELEERGSSEH-TGTIIEFKFDPTIFIETQVYDYERLRHRIQQLAFLNRGIKISIKDL 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  E  E T  Y+GG+  +  +L+ +K+ + +    ++   D+I++++ +++ND Y+ N+
Sbjct: 180 RGEETHEATYHYEGGLIEYAEFLNGNKQKINKQLFYVEKLVDDINVEITIQYNDSYNANI 239

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F NNIP ++GG H  G + ALTR + +Y + +    KD+   IG+D REG  S++SIK
Sbjct: 240 YSFANNIPTREGGMHEDGFKMALTRVLNNYAKVNK-ITKDEEGFIGEDTREGLISIISIK 298

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
            PDP+F  QTK KL ++EVR +V   V + L  +L E+P +AK+I++K++ A   R AAR
Sbjct: 299 HPDPQFEGQTKTKLGNTEVRQIVSQVVGESLDRFLLENPGDAKLIIEKLVLAKRSRIAAR 358

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+ T RK  LD      KLADC  ++ + +EL++VEGDSAGGSAKQGR  E QAILPL
Sbjct: 359 KAREAT-RKTPLDSLGFASKLADCRTKNAEIAELYIVEGDSAGGSAKQGRESEYQAILPL 417

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNVE+AR DK+L +QEI +L  A+G GIG +  D+ K RYHKI+IMTDADVDGAHI
Sbjct: 418 RGKVLNVEKARQDKILGNQEILSLFQAIGAGIGDEL-DVTKARYHKIVIMTDADVDGAHI 476

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           RTLLLTFF+R +  L+  G++Y  +PPLY I+ GK  +YV  +E L   + +     +++
Sbjct: 477 RTLLLTFFYRHLRPLVELGYIYFAQPPLYKISSGKRFEYVYTDEELPAVIESFGERYQMQ 536

Query: 574 LFCDSKGV 581
            +     +
Sbjct: 537 RYKGLGEM 544



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 58/211 (27%), Gaps = 17/211 (8%)

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
                 R       K       +    +             ++  +          + + 
Sbjct: 352 RSRIAARKAREATRKTPLDSLGFASKLADCRTKNAEIAELYIVEGDSAGGSAKQGRESEY 411

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                        +E+A    +   +    +  ++ + + + L+    +  K    +  +
Sbjct: 412 Q-AILPLRGKVLNVEKARQDKILGNQEILSLFQAIGAGIGDELDVTKARYHKIVIMTDAD 470

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL-ICNGDKIK-IT 717
            D    R               + +F  ++ R         +       I +G + + + 
Sbjct: 471 VDGAHIRT-------------LLLTFFYRHLRPLVELGYIYFAQPPLYKISSGKRFEYVY 517

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748
               L   I S G +   MQRYKGLGEMN  
Sbjct: 518 TDEELPAVIESFGER-YQMQRYKGLGEMNPE 547


>gi|288916706|ref|ZP_06411081.1| DNA gyrase, B subunit [Frankia sp. EUN1f]
 gi|288351961|gb|EFC86163.1| DNA gyrase, B subunit [Frankia sp. EUN1f]
          Length = 692

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 275/631 (43%), Positives = 369/631 (58%), Gaps = 58/631 (9%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YDA SI++L+GLDAV+KRP MYIG T GE GLHH++YEV+DNA+DE+L GY D ITVTL
Sbjct: 2   AYDASSIKVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEALAGYCDTITVTL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ ++Y VSGGLHGVGVSVV
Sbjct: 61  LADGGVRVTDNGRGIPVGEHPVKKIPTVELLLTTLHAGGKFDGQAYAVSGGLHGVGVSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L + ++ +G+ +   ++      PL  T      TGT ++F     IF    + 
Sbjct: 121 NALSTRLDVAVETDGHSWFQPYVASRPAAPLAKT-GTSKKTGTTISFWADPTIFETTTYK 179

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPRE---------------------------- 220
           Y+TL  RL+E++FLN  + I+L D+RS   +                             
Sbjct: 180 YETLYRRLQEMAFLNKGLSITLRDERSAAAKNPALAAKAAEAAEAAAAAGEAEAPAAETA 239

Query: 221 --------------------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                               +T  Y  G+  FV +L+  K  + +S I ++     I  +
Sbjct: 240 AVEASSAPAAAAEEVTEPVEVTFKYDNGLVDFVGHLNATKDAVHRSVISLESKGTGIEAE 299

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK------ 314
           LAM+WN GY+E+V  F N I   +GGTH  G R+ALT  + +Y +     K  K      
Sbjct: 300 LAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPVKAGSKNT 359

Query: 315 -RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              + GDD REG T+++S+K+  P+F  QTK KL ++E +  V+      L  W E +  
Sbjct: 360 DERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEMCYAALKDWFEVNRT 419

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKL+DC   DP++ EL++VEGD
Sbjct: 420 EARAIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLSDCQYTDPERCELYIVEGD 479

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAK GR  + QAILPLRGKILNVE+AR D++L + E+  LI ALGTGI  D FDI 
Sbjct: 480 SAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQALIQALGTGI-HDDFDIA 538

Query: 494 KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYV 553
           KLRYHKI++M DADVDG HIRTLLLT  FR M  L+  G +++ +PPLY I  G+     
Sbjct: 539 KLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGHVFLAQPPLYKIKWGREDWEY 598

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISK 584
              +   D L+ +      +L  D+      
Sbjct: 599 AYSDRERDGLLERGTEAGRKLPKDAIQRFKG 629



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 3/85 (3%)

Query: 722 LLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           LL+     GRK    ++QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS 
Sbjct: 608 LLERGTEAGRKLPKDAIQRFKGLGEMNATELWDTTMDPDRRILLQVTLDDAAVADELFSV 667

Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803
           LMG++V+ RR FIQ N+     LDI
Sbjct: 668 LMGEDVDARRSFIQRNAKDVRFLDI 692


>gi|257067232|ref|YP_003153487.1| DNA gyrase subunit B [Brachybacterium faecium DSM 4810]
 gi|256558050|gb|ACU83897.1| DNA gyrase subunit B [Brachybacterium faecium DSM 4810]
          Length = 711

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 254/604 (42%), Positives = 362/604 (59%), Gaps = 33/604 (5%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               YDA  I +L+GL+AV+KRP MYIG T GE GLHHM+ EV+DN++DE++ G+ D I 
Sbjct: 42  APEHYDASDITVLEGLEAVRKRPGMYIGST-GERGLHHMVQEVVDNSVDEAMAGHGDTIE 100

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DG   V D+ RGIP  +H  EG  A E+++T LHAGGKF    Y VSGGLHGVG 
Sbjct: 101 VTLLADGGVRVVDHARGIPVAMHPTEGKPAVELVLTVLHAGGKFGGGGYAVSGGLHGVGS 160

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  +++ I+R+G+++  ++  G+   PL           T +TF    +IF   
Sbjct: 161 SVVNALSIRMEVEIRRDGHVWRQAYSRGVPLAPLDKGEETEETG-TTITFWADDEIFDET 219

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE--------------------------PR 219
            ++++TL+ R ++++FLN  ++I+L D+R+PE                          PR
Sbjct: 220 VYDFETLRKRFQQMAFLNKGLRITLTDERAPEVEETEDDHLVDVELEAEGAETGKDAGPR 279

Query: 220 EITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLC 275
            ++  Y+ G++ FV +++  K  + +    I  +    +  IS+++AM+W   Y E+V  
Sbjct: 280 TVSYLYERGLQDFVEFINTAKRAEVIHPEIISFESEDTDAKISVEVAMQWTGAYSESVHT 339

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + N I   +GGTH  G RS+LT  +  Y       K+   ++ G+D REG T+V+S+K+ 
Sbjct: 340 YANTINTHEGGTHEEGFRSSLTSIVNRYGRAQGLLKEKDANLTGEDIREGLTAVVSVKLG 399

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL ++  R+ +   + D L  W + HP EAK IV K   A+  R+AAR+A
Sbjct: 400 EPQFEGQTKTKLGNTIARTFMVKVMTDQLQDWFDSHPAEAKSIVMKGQAAAAAREAARKA 459

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RD TRRK  L+   +PGKL DCS R+P + E+F+VEGDSAGGSA  GR    QAILP+RG
Sbjct: 460 RDATRRKSPLETGGMPGKLRDCSSRNPAECEIFIVEGDSAGGSAVSGRDPRTQAILPIRG 519

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR D+ L +QE+ +LITA GTGIG+D FD  KLRYHKI++M DADVDG HI T
Sbjct: 520 KILNVEKARLDRALDNQEVRSLITAFGTGIGED-FDATKLRYHKIVLMADADVDGQHIVT 578

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLT  FR M  LI  G ++I  PPL+ +    +       +   D  +    +    + 
Sbjct: 579 LLLTLLFRYMRPLIELGHVFIAMPPLFRLKWSNAPHEYVFSDEERDERLEAGRAAGRRIP 638

Query: 576 CDSK 579
            D+ 
Sbjct: 639 RDNG 642



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 13/106 (12%)

Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPD 758
               + + ++         L+   + GR+     G  +QRYKGLGEM+  +L  TT++ +
Sbjct: 613 PHEYVFSDEERD-----ERLEAGRAAGRRIPRDNG--IQRYKGLGEMDWKELQSTTMDTN 665

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           TR+L +V + +A+ AD +FS LMGD+VE RR FIQEN+     LDI
Sbjct: 666 TRTLKQVTVDEAADADTIFSVLMGDDVESRRRFIQENAKDVRFLDI 711


>gi|325678556|ref|ZP_08158167.1| DNA gyrase, B subunit [Ruminococcus albus 8]
 gi|324109775|gb|EGC03980.1| DNA gyrase, B subunit [Ruminococcus albus 8]
          Length = 665

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 271/592 (45%), Positives = 378/592 (63%), Gaps = 11/592 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++++YD + I++L+GL+ V+ RP MYIG T G  GLHH++YE++DNAIDE+L GY   I 
Sbjct: 25  KSNNYDENQIEVLEGLEPVRVRPGMYIGST-GPKGLHHLVYEIVDNAIDEALAGYCTEII 83

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG-LHGVG 124
           V +       V DNGRGIPT +H +EGISAA V+ T LHAGGKF         G LHGVG
Sbjct: 84  VDILPGDVIRVVDNGRGIPTGIHPKEGISAATVVYTVLHAGGKFGGGGGYKVAGGLHGVG 143

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALS +L+L +    +++   F  G     + V G   + TGTEV F P   IF  
Sbjct: 144 ASVVNALSEYLELTVYDGSHVHFQRFDRGQYSEAMKVIGDT-DKTGTEVKFKPDPLIFQE 202

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLD--RHK 240
              F+Y+ L  RLRE +FLN+ ++I   D + + +P   T+ Y+GGI  FV ++   R  
Sbjct: 203 TTTFDYEVLLKRLREQAFLNAGIKIIFSDLRNAEKPVTETLHYEGGIRQFVEHIHKTRGV 262

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL +  I I G  D++  ++A+++ND Y+E +L F NNI   DGG+H    +SALT+ +
Sbjct: 263 EPLSEDVIYINGVEDDMFAEIALQYNDTYNEIILSFANNIHTPDGGSHEMAFKSALTKIL 322

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y +     K +  +++G+DCREG T+++S+K+ +  F  QTK +L + EVR  V+  +
Sbjct: 323 NEYGKAHNLIKDNDDALMGEDCREGLTAIVSVKLTNCEFEGQTKGRLGNPEVRPFVDKML 382

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +LEE+P  AK I  K L A   R+AA+RAR+LTRRK VL+ ASLPGKLADCSER
Sbjct: 383 KEKLRNYLEENPAVAKAIFDKSLQAQKAREAAKRARELTRRKSVLESASLPGKLADCSER 442

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D   +E+++VEGDSAGGSAK+GR R  QAILPL GK+LNVE+AR DK+  + ++  ++TA
Sbjct: 443 DMTMTEIYIVEGDSAGGSAKEGRDRRYQAILPLWGKMLNVEKARIDKVYGNDKLMPVVTA 502

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGT IG+D FDI+KLRY K+IIM DADVDG+HIRTLLLTFFFR M  LI    +Y+ +PP
Sbjct: 503 LGTSIGED-FDISKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPLIEQEHVYLAQPP 561

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRN 589
           L+ + R K ++Y   +E  + Y+   S   +           G +    L  
Sbjct: 562 LFKVERAKKVRYAFTDEERDKYIAELSEGGKLKVAVQRYKGLGEMDPEQLWE 613



 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           +  +   G+  +++QRYKGLGEM+  QLWETT++P+ R++++V + DA +AD++F+ LMG
Sbjct: 584 IAELSEGGKLKVAVQRYKGLGEMDPEQLWETTMDPERRTMIKVTMEDAVKADEIFTILMG 643

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
           D+V PR+EFI++N+     LD+
Sbjct: 644 DKVGPRKEFIEKNAEYVRNLDV 665


>gi|68138761|gb|AAY86011.1| GyrB [Burkholderia cenocepacia]
          Length = 640

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 288/644 (44%), Positives = 404/644 (62%), Gaps = 20/644 (3%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161
           YKVSGGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P++V
Sbjct: 1   YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           TG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +    
Sbjct: 61  TGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--D 117

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIP
Sbjct: 118 DFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 177

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSS
Sbjct: 178 QRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSS 237

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRR
Sbjct: 238 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRR 297

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE
Sbjct: 298 KGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 357

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF 
Sbjct: 358 KARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFL 417

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   
Sbjct: 418 YRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAA 477

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS + L       L    +I      +D   +E AV+ GV    S++E   + A  L   
Sbjct: 478 ISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAA 536

Query: 642 LNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L+  A K+E      +        + V+R   G     V++     +   +     +N  
Sbjct: 537 LHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTF 596

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +        +      + +    S +  + +   + +S QRYKG
Sbjct: 597 KGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 640


>gi|302820792|ref|XP_002992062.1| hypothetical protein SELMODRAFT_162108 [Selaginella moellendorffii]
 gi|300140184|gb|EFJ06911.1| hypothetical protein SELMODRAFT_162108 [Selaginella moellendorffii]
          Length = 618

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/538 (46%), Positives = 340/538 (63%), Gaps = 11/538 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T G  GLHH+IYEVLDNAIDE   G+A  + V L+ DGS +++DNGRGIPTD+H 
Sbjct: 1   MYIGST-GPRGLHHLIYEVLDNAIDEVQAGFATQVDVVLHSDGSVSITDNGRGIPTDVHP 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
             G S  E ++T LHAGGKF      Y VSGGLHGVGVSVVNALS  L+  + R G  Y 
Sbjct: 60  ATGKSTLETVLTVLHAGGKFGGDESGYTVSGGLHGVGVSVVNALSKRLEATVWRNGQEYR 119

Query: 148 MSFINGILDNPLVVTG---SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
             F  G     L        + + TGT V FLP  ++F+    F+ + +  RLRE++FLN
Sbjct: 120 QVFQRGKAVGSLTTRSLPRESSSRTGTCVKFLPDDEVFTTTTAFDPNIVSSRLREVAFLN 179

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
             V I+L ++ +         + GG+  +V +L++ K  +   PI     +D+IS++++M
Sbjct: 180 PEVTINLKEESATTD--EVFHFGGGLVEYVEWLNQDKTKIH-DPISFSVEKDDISVNVSM 236

Query: 264 RWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           +W  D Y + +L + N+I   DGGTHL GL+  LTR +     +S   ++   ++ G+  
Sbjct: 237 QWCSDAYSDTLLGYANSIRTADGGTHLDGLKMGLTRTLNILGRRSKAIREKGDNLSGEHA 296

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T V+S+K+P+P F  QTK +L + EVR +VE  V + ++ +LE  P   + I+ K 
Sbjct: 297 REGLTCVISVKVPEPEFEGQTKTRLGNVEVRKIVEQAVIEQVTEYLEFRPDTLEAILSKA 356

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           L A    +AA++AR+L RRK VL  ++LPGKLADC+  DP+ SE+F+VEG+SAGGSAKQG
Sbjct: 357 LQAYKAAEAAKKARELVRRKNVLKTSTLPGKLADCTSSDPRVSEIFIVEGESAGGSAKQG 416

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R R  QAILPL+GKILN+ER     +  +QEI  LI ALG G   + F  + LRYHKIII
Sbjct: 417 RDRAFQAILPLKGKILNIERKDDAAIYKNQEIQDLIVALGLGTRGEEFHKDTLRYHKIII 476

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           +TDADVDGAHIRTLLLTFFFR   +L   G++Y+  PPLY + RGK   Y   E  L+
Sbjct: 477 LTDADVDGAHIRTLLLTFFFRYQRALFDGGYIYVGVPPLYKVERGKHAHYCYSENELQ 534



 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           + +H        ++      V    +      F F  +        I      +  +   
Sbjct: 462 EEFHKDTLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDGGYIYVGVPPLYKVERG 521

Query: 711 GDKIKITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                       L  +          ++QR+KGLGEM   QLW+TTL+P  R L ++ + 
Sbjct: 522 KHAHYCYSENE-LQGLLGTFAANAPYNIQRFKGLGEMMPLQLWDTTLDPSKRMLKKLTLE 580

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS---LPSALDI 803
           DA +A   FSRLMGD+VEPR+E I +++       LD+
Sbjct: 581 DAVEASFTFSRLMGDKVEPRKELILKSAAQFKQQNLDV 618


>gi|254519462|ref|ZP_05131518.1| DNA topoisomerase IV subunit B [Clostridium sp. 7_2_43FAA]
 gi|226913211|gb|EEH98412.1| DNA topoisomerase IV subunit B [Clostridium sp. 7_2_43FAA]
          Length = 649

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/607 (38%), Positives = 346/607 (57%), Gaps = 22/607 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++++    YD   +  L+ L+ V+ RP MYIG T G  GLHH ++EVLDN+IDE   GY
Sbjct: 1   MNEDLMK-GYDVTDLTSLEKLEPVRIRPGMYIGST-GTKGLHHCVWEVLDNSIDEISNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            +  T+ +N D S TV DNGRGIPT +H  +  S  E++ T LH GGKFN K+YK SGGL
Sbjct: 59  GNKATIVINKDKSITVIDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNKNYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSF--------IN---GILDNPLVVTGSAGNDT 169
           HGVG +VVNALSSWL++ + + GNIY+  F             G     L V G    +T
Sbjct: 119 HGVGAAVVNALSSWLEVEVHQNGNIYKQRFGYAYDKELKRDMPGTPITKLEVVGKTK-NT 177

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+VTF+P  ++FS  DF  D +  RL+EL+F N  + + LID R  E      + + G+
Sbjct: 178 GTKVTFMPDKEVFSSVDFKIDVIDERLQELAFQNKGIHLELIDLRKEEEFRKEYYSERGL 237

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
             F+ YL+  K  L Q PI  +G R   +I    +L +++ D   EN+  + NNIP  + 
Sbjct: 238 LDFIEYLNESKTTLHQVPIYFEGERVVNNIQMFGELCIQFTDSSTENIASYVNNIPTTEA 297

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +G ++ +TR      +K    K+  +   GDD REG T+++ IK+ +P F  QTK 
Sbjct: 298 GTHETGFKTGMTRAFKEGAKKLGLVKEKDKDFEGDDLREGMTAIVRIKITNPMFEGQTKT 357

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL S+E  +++        S W+E++   A +++   L A+  R+  ++  +  ++K   
Sbjct: 358 KLGSTEAYTMMNDLAYTKFSEWIEDNKEVATMLINNALQAAQRREKIKKINEAEKKKVGK 417

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             A L GK+A C+ +D   +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + 
Sbjct: 418 GAAPLAGKVAVCTLKDNTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 477

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + +L+S+E+    TALGTG   D++    L+Y KIIIM+DADVDG HIRTL +T+ +R M
Sbjct: 478 ENVLASEELKIFNTALGTGT-LDNYKEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 536

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVI 582
             LI NG LY+ +PPLY + +    + V      ++ L N         +       G +
Sbjct: 537 RPLIANGHLYLAQPPLYKVYKTVKGKEVHKYAYSDEELENVKKEIGKGALIQRYKGLGEM 596

Query: 583 SKNDLRN 589
           + + L  
Sbjct: 597 NPDQLWQ 603



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/315 (20%), Positives = 122/315 (38%), Gaps = 30/315 (9%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRG----KSLQYVKDEES 558
           D D +G  +R  +      ++ + +  G     +     Y +       K  ++++D + 
Sbjct: 326 DKDFEGDDLREGMTAIVRIKITNPMFEGQTKTKLGSTEAYTMMNDLAYTKFSEWIEDNKE 385

Query: 559 LEDYLINQSL-------------SEEIELFCDSKGVISKNDL-----RNFIDDALKIDKL 600
           +   LIN +L               E +        ++          N +++ + ++  
Sbjct: 386 VATMLINNALQAAQRREKIKKINEAEKKKVGKGAAPLAGKVAVCTLKDNTVNEFIVVEGD 445

Query: 601 IKDFYPNHDKTFIEQAVISG---VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    Q ++     + N E  +  NV  + +L      +   +  ++    
Sbjct: 446 SAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLASEELKIFNTALGTGTLDNYKEED 505

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI---EENYLTILSLICNGDKI 714
              D ++      V    +      + +      I +  +   +     +   +   +  
Sbjct: 506 LKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPLIANGHLYLAQPPLYKVYKTVKGKEVH 565

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           K       L+ +     KG  +QRYKGLGEMN  QLW+TTLNP+TR+LL+V I DA++A+
Sbjct: 566 KYAYSDEELENVKKEIGKGALIQRYKGLGEMNPDQLWQTTLNPETRTLLQVTIEDAAKAE 625

Query: 775 DLFSRLMGDEVEPRR 789
            + S LMGD VEPR+
Sbjct: 626 KMVSLLMGDIVEPRK 640


>gi|331269786|ref|YP_004396278.1| DNA topoisomerase [Clostridium botulinum BKT015925]
 gi|329126336|gb|AEB76281.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium botulinum
           BKT015925]
          Length = 652

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/609 (37%), Positives = 350/609 (57%), Gaps = 23/609 (3%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS   +   +SYD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   
Sbjct: 1   MSLVKDRNKNSYDVTDLTSLEKLEPVRVRPGMYIGST-GTKGLHHCIWEILDNSIDEIAN 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D +T+ LN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKFN K+YK SG
Sbjct: 60  GYGDKVTLILNEDKSVTIIDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNKNYKTSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGN 167
           GLHGVG +VVNALS W+++ + ++G+IY+  F             G    PL + G   N
Sbjct: 120 GLHGVGAAVVNALSEWVEVEVYQKGHIYKQRFEYAEDKSLNKKMPGTPITPLEIIGDT-N 178

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           DTGT +TF P  ++FS  DF ++ +  RL+EL+F N  + + + D+R  E  E     + 
Sbjct: 179 DTGTRITFKPDKEVFSTTDFKFEVIDERLQELAFQNKGITLVIKDERKEETVEKEYRSER 238

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQK 283
           G+  F+ YL+  K P+ + P+  +G ++  SI    ++ +++ D   EN+  + NNIP  
Sbjct: 239 GLLDFIEYLNESKTPIHKEPLIFEGEKEVNSIKVYSEVCIQFTDSSTENIASYVNNIPTT 298

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           + GTH +G ++ +TR    +  K    K+  R   GDD REG T++L +K+ +P F  QT
Sbjct: 299 ESGTHETGFKTGMTRAFKEWARKLNIVKEKDRGFEGDDLREGMTAILRVKISNPIFEGQT 358

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL ++E  +V+       +  W+E++   A  I+   + A+  RD  ++  D  ++K 
Sbjct: 359 KTKLGNNEAYTVMNELAYTKIGEWIEDNKEIATQIINNAVSAAARRDKIKKINDAEKKKI 418

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
               A L GK++ C+ +     E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ 
Sbjct: 419 GKGAAPLAGKVSICTLKKSDICEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQ 478

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R + +L+S+E+    TA+GTG+  ++++   L+Y+KIII++DADVDG HIRTL +T+ +R
Sbjct: 479 RLENVLASEELKLFNTAIGTGV-LENYNEEDLKYNKIIILSDADVDGYHIRTLWITYIYR 537

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKG 580
            M SLI NG LYI  PPLY + +      V+     +D       +     +       G
Sbjct: 538 YMKSLITNGHLYIALPPLYKVYKNAKNGEVRRYAYSDDELELAKKEIGKGALIQRYKGLG 597

Query: 581 VISKNDLRN 589
            ++ + L +
Sbjct: 598 EMNPDQLWD 606



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 57/88 (64%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            NG+  +       L+       KG  +QRYKGLGEMN  QLW+TTLNP+TR+L ++ I 
Sbjct: 563 KNGEVRRYAYSDDELELAKKEIGKGALIQRYKGLGEMNPDQLWDTTLNPETRTLQQITIE 622

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS 796
           DA++A+ + S LMGD VEPRR ++ + +
Sbjct: 623 DAAKAEKMISLLMGDVVEPRRNYMYKYA 650


>gi|294507492|ref|YP_003571550.1| DNA gyrase subunit B [Salinibacter ruber M8]
 gi|294343820|emb|CBH24598.1| DNA gyrase subunit B [Salinibacter ruber M8]
          Length = 643

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/592 (39%), Positives = 342/592 (57%), Gaps = 11/592 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y  + I +L+GL+ V+KRP MYIG T G  GLHH+++EV+DNA+DE+  GYA  I V 
Sbjct: 3   TTYTGEDIDVLEGLEPVRKRPGMYIGGT-GRPGLHHILWEVVDNAVDEATNGYASRIEVV 61

Query: 68  LNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ DG S +VSDNGRGIP D H E+G+   ++I+T LH+GGKF+  +Y  SGGLHGVGVS
Sbjct: 62  LHEDGESISVSDNGRGIPVDDHPEKGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   +KR+G  Y+  F  G     L  T  +   TGT++ F P  DIF   +
Sbjct: 122 VVNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESARGTGTDIYFRPDPDIFESVE 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH--KKPLM 244
           F+   ++  L   ++LN  ++I   D+ S E     + ++GGI+ ++ YL       P+ 
Sbjct: 182 FDPSWIREHLDVKTYLNRDLKIIFRDETSGERH--ELHHEGGIQEYLDYLVEDLQVSPIH 239

Query: 245 QSPIRIQ--GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                ++      +  +++A++W D   E +  F N IP +DGGTH  GL+S +   I S
Sbjct: 240 DDVFMMEDDDLDGDGRLEIALQWTDAPKEQLHTFVNGIPTEDGGTHEQGLKSGIRAVIRS 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           +++        +  + GDD REG   ++++   DP+F  QTK+KL +  VRS V   +  
Sbjct: 300 FMDTH-DLVPHRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSGALRT 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERD 421
            L  +L +H    + I  +V+ A+  R A R A   +  +         PGKLADCS   
Sbjct: 359 ELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADCSSST 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P + ELF+VEGDSAGGSAKQ R RE QA+LPLRGK+LN E+A  D++ +++E+  ++ AL
Sbjct: 419 PSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNIVQAL 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG    D++ LRY K+I++ DAD DG HI TLLLTFF+R M  LI  GF++I +PPL
Sbjct: 479 GCGIGDAL-DLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQPPL 537

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           Y I  GK   +  DE   E  L               +       + + +++
Sbjct: 538 YRIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNE 589



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 679 GSSIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKI----KITGPCSLLDTIFSIGRK- 732
            + + +F  +Y R +            L  I  G +            +LD I S GR  
Sbjct: 510 ATLLLTFFYRYMRPLIEGGFVHIAQPPLYRIEAGKETHWALDEPDKEQILDEIRSDGRNP 569

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDEVEPRRE 790
            + +QR+KGLGEM    L ETTL+P+ R LL V I D  +   +   + LMG +   R +
Sbjct: 570 NVDIQRFKGLGEMMPDTLNETTLSPEGRRLLEVSIPDTERMVTEQTITELMGRDSSARFK 629

Query: 791 FIQENSLPS-ALDI 803
           FI +++  +  LD+
Sbjct: 630 FIMQHAAEADELDV 643


>gi|254511973|ref|ZP_05124040.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535684|gb|EEE38672.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium KLH11]
          Length = 652

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/645 (37%), Positives = 343/645 (53%), Gaps = 18/645 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YDA SI++L+GL+ V+KRP MYIG TD E  LHHM+ E+LDN++DE++ G+A+ I V
Sbjct: 11  TNTYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHMVAEILDNSMDEAVAGHANRIEV 69

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
            L+ D + TV DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+ SGGLHGVG 
Sbjct: 70  ELHDDYALTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGA 129

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  + +++ R+  ++E  F  G+   P+   G+A N  GT VTF   +DIF   
Sbjct: 130 SVVNALSDSMVVQVARDKTLFEQRFSRGVPLGPVEKVGAAPNRRGTTVTFHADADIFGHH 189

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
            F    L   +R  ++L S V+I           P E T  + GG+  ++          
Sbjct: 190 KFKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETPTEATFHFPGGLSDYLKETMNGSSTY 249

Query: 244 MQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + P        +       ++ A+ W       +  + N +P  +GGTH++G  +A+ +
Sbjct: 250 AEQPFAGTVDFQEKFNTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVAGFWAAVLK 309

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y E           +  DD   G  +++S  + +P F  QTK++L + E + +VE+
Sbjct: 310 GIKAYGELINNK--KAGQITRDDLITGGCALVSCFISEPEFVGQTKDRLATVEAQRLVEN 367

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D    WL      A  I+  ++  +  R   R  ++ T+RK       LPGKL DCS
Sbjct: 368 SVRDHFDNWLAADTKSAGAILDFLILRAEERLRRRAEKE-TQRKSATKKLRLPGKLVDCS 426

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
                 +ELF+VEGDSAGGSAK GR R+ QA+LPLRGKILNV  A   K+ ++ EI  L 
Sbjct: 427 SSTRDGTELFIVEGDSAGGSAKMGRDRKTQALLPLRGKILNVLGAASSKLGTNAEINDLT 486

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG G+G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  +I  G LY+  
Sbjct: 487 QALGVGLG-TKFNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLYLAC 545

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDD--- 593
           PPLY +T+G    Y  DE   +++L      +           G +   DL+    D   
Sbjct: 546 PPLYRLTQGAKRVYCLDEAERDEWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPGS 605

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
              I   I +  P      +E+ +           + N     +L
Sbjct: 606 RKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENARFVEEL 650



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++      D ++      V    +      F F      I +  +      +  L     
Sbjct: 497 FNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLYLACPPLYRLTQGAK 556

Query: 713 KIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         + +   +G KG I + R+KGLGEM+A  L ETT++P +R L+RV I + 
Sbjct: 557 RVYCLDEAERDEWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPGSRKLIRVTIDED 616

Query: 771 S--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
              +  DL  RLMG + E R ++IQEN+     LD+
Sbjct: 617 EPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 652


>gi|311897312|dbj|BAJ29720.1| putative DNA gyrase subunit B [Kitasatospora setae KM-6054]
          Length = 663

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 270/586 (46%), Positives = 369/586 (62%), Gaps = 12/586 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D     +YDA +IQ+L+GLDAV+KRP MYIG T GE GLHH++YE++DN++DE+L G+AD
Sbjct: 12  DPSDQKAYDASAIQVLEGLDAVRKRPGMYIGST-GERGLHHLVYEIVDNSVDEALAGHAD 70

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  DG   V DNGRGIP  +   +   A EV++T LHAGGKF    Y VSGGLHG
Sbjct: 71  TIGVTILADGGVRVVDNGRGIPVGIMPGQDRPAVEVVLTVLHAGGKFGGGGYAVSGGLHG 130

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS+ L + I  +G  +   + +G    PL        +TGT VTF    DIF
Sbjct: 131 VGISVVNALSTRLAVDISTDGARWTQEYKSGAPTAPLAR-HEETGETGTTVTFWADPDIF 189

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMFYKGGIEAFVSY- 235
               ++++TL  R +E++FLN  + I+L D+R     +       T  Y GGI  FV++ 
Sbjct: 190 ETTVYSFETLSRRFQEMAFLNKGLTIALTDERPEHVDDEGKPLSVTYRYDGGIADFVAHL 249

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
             R  + +  S I  +    +  IS ++AM+WN  Y E V  F N I    GGTH  G R
Sbjct: 250 NSRKGEVIHPSVIDFEAEDKDKTISAEIAMQWNSSYTEGVYSFANTIHTHGGGTHEEGFR 309

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  Y       ++   ++ G+D REG T+++S+K+ +P+F  QTK+KL ++E +
Sbjct: 310 AALTGLMNRYARDKKLLREKDDNLSGEDIREGLTAIISVKLGEPQFEGQTKDKLGNTEAK 369

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + V+  VN+ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRKG+L+ ASLPGK
Sbjct: 370 TFVQKVVNEHLADWLDRNPAEAADIIRKSIQAASARVAARKARDLTRRKGLLESASLPGK 429

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L+DC  +DP + E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR DK+L + E
Sbjct: 430 LSDCQSKDPAECEIFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDKVLQNTE 489

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +  LI+A G GI Q+ +D  KLRYHKI++M DADVDG HIRTLLLT  FR M  L+  G+
Sbjct: 490 VQALISAFGCGI-QEDYDAAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGY 548

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           +Y+  PPLY I  G+        +   D LI   +     L  D  
Sbjct: 549 VYLAMPPLYKIKWGRDEFEYAYSDRERDALIAAGVEAGRRLPKDDA 594



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEMNA +L  TT++   R LL+V + DA++ADDLFS LMG++VE RR FIQ N
Sbjct: 595 IQRFKGLGEMNAEELRVTTMDAAHRLLLQVTLEDAARADDLFSVLMGEDVEARRSFIQRN 654

Query: 796 SLPSA-LDI 803
           +     LD+
Sbjct: 655 AKDVRFLDV 663


>gi|83815720|ref|YP_445608.1| type II DNA topoisomerase, B subunit [Salinibacter ruber DSM 13855]
 gi|83757114|gb|ABC45227.1| type II DNA topoisomerase, B subunit [Salinibacter ruber DSM 13855]
          Length = 643

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/592 (39%), Positives = 342/592 (57%), Gaps = 11/592 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y  + I +L+GL+ V+KRP MYIG T G  GLHH+++EV+DNA+DE+  GYA  I V 
Sbjct: 3   TTYTGEDIDVLEGLEPVRKRPGMYIGGT-GRPGLHHILWEVVDNAVDEATNGYASRIEVV 61

Query: 68  LNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ DG S +VSDNGRGIP D H E+G+   ++I+T LH+GGKF+  +Y  SGGLHGVGVS
Sbjct: 62  LHEDGESISVSDNGRGIPVDDHPEKGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   +KR+G  Y+  F  G     L  T  +   TGT++ F P  DIF   +
Sbjct: 122 VVNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESARGTGTDIYFRPDPDIFESVE 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH--KKPLM 244
           F+   ++  L   ++LN  ++I   D+ S E     + ++GGI+ ++ YL       P+ 
Sbjct: 182 FDPSWIREHLDVKTYLNRDLKIIFRDETSNER--YELHHEGGIQEYLDYLVEDLQVSPIH 239

Query: 245 QSPIRIQ--GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                ++      +  +++A++W D   E +  F N IP +DGGTH  GL+S +   I S
Sbjct: 240 DDVFMMEDDDLDGDGRLEIALQWTDAPKEQLHTFVNGIPTEDGGTHEQGLKSGIRAVIRS 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           +++        +  + GDD REG   ++++   DP+F  QTK+KL +  VRS V   +  
Sbjct: 300 FMDTH-DLVPHRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSGALRT 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERD 421
            L  +L +H    + I  +V+ A+  R A R A   +  +         PGKLADCS   
Sbjct: 359 ELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADCSSST 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P + ELF+VEGDSAGGSAKQ R RE QA+LPLRGK+LN E+A  D++ +++E+  ++ AL
Sbjct: 419 PSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNIVQAL 478

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG    D++ LRY K+I++ DAD DG HI TLLLTFF+R M  LI  GF++I +PPL
Sbjct: 479 GCGIGDAL-DLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQPPL 537

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           Y I  GK   +  DE   E  L               +       + + +++
Sbjct: 538 YRIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNE 589



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 679 GSSIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKI----KITGPCSLLDTIFSIGRK- 732
            + + +F  +Y R +            L  I  G +            +LD I S GR  
Sbjct: 510 ATLLLTFFYRYMRPLIEGGFVHIAQPPLYRIEAGKETHWALDEPDKEQILDEIRSDGRNP 569

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDEVEPRRE 790
            + +QR+KGLGEM    L ETTL+P+ R LL V I D  +   +   + LMG +   R +
Sbjct: 570 NVDIQRFKGLGEMMPDTLNETTLSPEGRRLLEVSIPDTERMVTEQTITELMGRDSSARFK 629

Query: 791 FIQENSLPS-ALDI 803
           FI +++  +  LD+
Sbjct: 630 FIMQHAAEADELDV 643


>gi|118589107|ref|ZP_01546514.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Stappia aggregata IAM 12614]
 gi|118438436|gb|EAV45070.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Stappia aggregata IAM 12614]
          Length = 681

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 241/661 (36%), Positives = 359/661 (54%), Gaps = 28/661 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  I V
Sbjct: 39  SDDYSAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHATWIDV 97

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +L+ DG  T++DNGRGIP D H +    SA EVIMT LHAGGKF+ K Y+ SGGLHGVG+
Sbjct: 98  SLSADGYLTITDNGRGIPVDPHPKFKDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGI 157

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV- 184
           SVVNALS  L + + R   +Y   F  G    PL + G   N  GT+V+F P   IF   
Sbjct: 158 SVVNALSEELIVEVARSRKLYRQIFRRGHAQGPLELVGDTQNRRGTQVSFKPDDQIFGKG 217

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDR 238
             F    L    R  ++L   V+I          ++   P E    + GG+  F++    
Sbjct: 218 AKFIPARLLKMARSKAYLFGGVEIRWHCAPELLSEKDETPSEAVFHFPGGLRDFLNERLS 277

Query: 239 HKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            ++ ++      +      + S++ A+ W  G    V  + N +P  +GGTH +G R AL
Sbjct: 278 KERRVVDDVFFGRTDNAGKHGSVEWAVSWYAG-DGFVNSYCNTVPTPEGGTHEAGFRYAL 336

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            R + +Y E +         + GDD       +LS+ + +P F  QTK+KL ++E   + 
Sbjct: 337 LRGLKAYGELTNNK--KASIITGDDVMTSAGGMLSVFIREPEFVGQTKDKLATNEATRIT 394

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V D    WL   P +A  +++ V+D +  R   R+ +D   RK  +    LPGKLAD
Sbjct: 395 ETAVRDAFDHWLTASPNQANKLLEWVIDRADERLRRRQEKD-VARKTAVRKLRLPGKLAD 453

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS      +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  DK++++Q++  
Sbjct: 454 CSANQSDGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVANAGRDKLVANQQLAD 513

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI ALG G  +  +  + LRY KI+IMTDADVDGAHI +LL+TFF+R+MP LI  G L++
Sbjct: 514 LIQALGCGT-RSQYRESDLRYEKIVIMTDADVDGAHIASLLITFFYREMPELIRGGHLFL 572

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
             PPLY +++G    Y +D+   ++ +      +        KG+     L   +     
Sbjct: 573 AVPPLYRLSQGGKTLYARDDAHKDELMETVFKGKSKVEIGRFKGL--GEMLPAQLK---- 626

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
            +  +        K  +E+  ++     +++  +   + +K   R  FI + +E +    
Sbjct: 627 -ETTMDPSKRTMLKVVVEEDAVT-----DTNDTVERLMGNKPEARFRFIQDNAEFAEDLD 680

Query: 657 I 657
           I
Sbjct: 681 I 681



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  +     +    +LA+ +  +   +   +  S    + +V      V    +    
Sbjct: 494 ILNVANAGRDKLVANQQLADLIQALGCGTRSQYRESDLRYEKIVIMTDADVDGAHIASLL 553

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I    +      +  L   G  +          L++T+F  G+  + + 
Sbjct: 554 ITFFYREMPELIRGGHLFLAVPPLYRLSQGGKTLYARDDAHKDELMETVFK-GKSKVEIG 612

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI-TDAS-QADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R++L+V +  DA    +D   RLMG++ E R  FIQ+N
Sbjct: 613 RFKGLGEMLPAQLKETTMDPSKRTMLKVVVEEDAVTDTNDTVERLMGNKPEARFRFIQDN 672

Query: 796 SLPSA-LDI 803
           +  +  LDI
Sbjct: 673 AEFAEDLDI 681


>gi|192291144|ref|YP_001991749.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris TIE-1]
 gi|192284893|gb|ACF01274.1| DNA topoisomerase IV, B subunit [Rhodopseudomonas palustris TIE-1]
          Length = 683

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 238/598 (39%), Positives = 331/598 (55%), Gaps = 16/598 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A  I 
Sbjct: 36  AEDGYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIE 94

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L  DG  TVSDNGRGIP D H +    SA EVIM  LHAGGKF+ K Y+ SGGLHGVG
Sbjct: 95  VELTADGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGGLHGVG 154

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALSS L++ + R   ++ M F  G     L   G   N  GT V F P +DIF +
Sbjct: 155 VSVVNALSSRLEVEVARGQQLHRMVFERGHPKGKLESLGKVNNRRGTRVRFKPDTDIFGA 214

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I               P E    + GG++ F+    
Sbjct: 215 KAAFKPQRLFKMARSKAYLFGGVKIRWKCDPELLKGIEDVPAEDEFHFPGGLKDFLGAAI 274

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
            +   +       +  R+  + + + A+ W       +  + N +P  DGGTH SGLRSA
Sbjct: 275 HNDTLVHPDIFAGKSGRNGAHGACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGLRSA 334

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E++   K+   S+  +D   G   +LS+ + +P F  QTK++L ++E + +
Sbjct: 335 LLRGLKDHAERAGQGKRA-SSITSEDVMVGAAIMLSVFVREPEFQGQTKDRLATAEAQKI 393

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + D    WL  +P++A  ++  V++        RR      RK  +    LPGKLA
Sbjct: 394 VEQAIKDPFDHWLSGNPVQANKLLDFVIER-AEERLRRRQEKEISRKTAVKKLRLPGKLA 452

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+    + SELF+VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  DK++++ ++ 
Sbjct: 453 DCTSTAAEGSELFIVEGDSAGGSAKQARDRSTQAVLPLRGKILNVASAGKDKVVANAQLS 512

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG   G  ++    LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI  G LY
Sbjct: 513 DLIQALGVSTG-VNYREEDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLY 571

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +  PPLY +T G    Y +D+   E+ L  +  +         KG+     +   + +
Sbjct: 572 LAVPPLYRLTHGAKTVYARDDAHKEELLKKEFNANAKVEVGRFKGL--GEMMPAQLKE 627



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 11/192 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S  +  V   ++L++ +  +   +  ++         ++      V    +    
Sbjct: 494 ILNVASAGKDKVVANAQLSDLIQALGVSTGVNYREEDLRYSRIIIMTDADVDGAHIASLL 553

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLD-TIFSIGRKGISM 736
             F +    K I    +      +  L      +          LL     +  +  + +
Sbjct: 554 ITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKEELLKKEFNANAK--VEV 611

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQE 794
            R+KGLGEM  +QL ETT++P  R++LRV +   D     +   RLMG + E R  FI E
Sbjct: 612 GRFKGLGEMMPAQLKETTMDPAKRTMLRVVLLPDDRDGTANSVERLMGTKAEARFAFISE 671

Query: 795 NSLPSA---LDI 803
            +  ++   LD+
Sbjct: 672 KAEFASDELLDV 683


>gi|329114385|ref|ZP_08243147.1| DNA gyrase subunit B [Acetobacter pomorum DM001]
 gi|326696461|gb|EGE48140.1| DNA gyrase subunit B [Acetobacter pomorum DM001]
          Length = 679

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/593 (39%), Positives = 342/593 (57%), Gaps = 19/593 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +      +YDA +I++L+GL+ V++RP MYIG TD ES LHH+  E+LDNA+DE++ G+A
Sbjct: 26  TQADSAQAYDASAIEVLEGLEPVRRRPGMYIGGTD-ESALHHLAAEILDNAMDEAVAGHA 84

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           + I V L+ +   T+ DNGRGIP D H      SA EVI+T LHAGGKF+ K+Y  SGGL
Sbjct: 85  NTIDVRLDTENRLTIRDNGRGIPVDPHPRFPDRSALEVILTTLHAGGKFSGKAYATSGGL 144

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ +++ I R+  +++  +  G     L   G+A N  GT+++F P  +
Sbjct: 145 HGVGSSVVNALSTRMEVEIARDRTVWKQVYERGKPVTKLEKVGAAPNRRGTQISFQPDPE 204

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVS 234
           IF    F    L    R  +FL   V I               P E T+ + GG+   ++
Sbjct: 205 IFGTHVFVPARLYRLCRSKAFLFRGVTIRWSCDPALIKTGDETPAEATLHFPGGLADSLT 264

Query: 235 YLDRHKKPLMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                K PL+      +          DN  ++ A+ + +    +++ + N IP   GGT
Sbjct: 265 DELGPKAPLLTPLWAGEAPLPPAADGTDNGKVEWAVAFLENGSASLVSYCNTIPTPQGGT 324

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G R+AL + + ++ ++   S K   ++  +D        LS+ + DP+F  QTKEKL
Sbjct: 325 HETGFRNALVKGLRAWGDQR--SIKKASAITAEDVLGMSAGRLSVFIRDPQFQGQTKEKL 382

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            SS    +VE+ + D    WL ++P +A  ++   ++ +  R   +  ++ T RK     
Sbjct: 383 TSSTASKLVETALRDRFDHWLAQNPPQADTLLGFAIERAEERLRRKEQKE-TPRKSATRR 441

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKL DC++     +E+FLVEGDSAGGSAKQ R+RE QA+LPLRGKILNV  A  +K
Sbjct: 442 LRLPGKLTDCTKEFAPDTEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASATAEK 501

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +QE+  LI ALG G G D FD++KLRY ++IIMTDADVDGAHI +LL+TFF+R++P 
Sbjct: 502 LRGNQELRDLIEALGCGSG-DRFDLSKLRYGRVIIMTDADVDGAHIASLLMTFFYRELPE 560

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           LI NG LY+ +PPLY +T+G    Y  D+   +  +  +  +         KG
Sbjct: 561 LIRNGHLYLAQPPLYRLTQGAKSVYAMDDADRDRKMKTEFKARGKIDVSRFKG 613



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI---TDASQADDLFSRLMGDEVE 786
            R  I + R+KGLGEM    L +TT++P  R+LLRV I    D          LMG + E
Sbjct: 602 ARGKIDVSRFKGLGEMPPGDLKQTTMDPKRRTLLRV-ITPQEDRLATRQRVESLMGRKPE 660

Query: 787 PRREFIQENSLPSA--LDI 803
            R  FIQE++      LD+
Sbjct: 661 LRFAFIQEHASTVDDLLDV 679


>gi|269799046|gb|ACZ43801.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 482

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 296/484 (61%), Positives = 378/484 (78%), Gaps = 4/484 (0%)

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGG
Sbjct: 1   HCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 60

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS 
Sbjct: 61  LHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSH 119

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +
Sbjct: 120 ETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVN 178

Query: 240 KKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR
Sbjct: 179 KTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTR 238

Query: 299 QITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
            + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 TLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLADC
Sbjct: 299 QAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 359 QEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 418

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITA+G GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI 
Sbjct: 419 ITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIA 478

Query: 538 KPPL 541
           +PPL
Sbjct: 479 QPPL 482


>gi|258541839|ref|YP_003187272.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632917|dbj|BAH98892.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635974|dbj|BAI01943.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639029|dbj|BAI04991.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642083|dbj|BAI08038.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645138|dbj|BAI11086.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648193|dbj|BAI14134.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651246|dbj|BAI17180.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654237|dbj|BAI20164.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-12]
          Length = 679

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/593 (39%), Positives = 342/593 (57%), Gaps = 19/593 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +      +YDA +I++L+GL+ V++RP MYIG TD ES LHH+  E+LDNA+DE++ G+A
Sbjct: 26  TQADSAQAYDASAIEVLEGLEPVRRRPGMYIGGTD-ESALHHLAAEILDNAMDEAVAGHA 84

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           + I V L+ +   T+ DNGRGIP D H      SA EVI+T LHAGGKF+ K+Y  SGGL
Sbjct: 85  NTIDVRLDTENRLTIRDNGRGIPVDPHPRFPDRSALEVILTTLHAGGKFSGKAYATSGGL 144

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ +++ I R+  +++  +  G     L   G+A N  GT+++F P  +
Sbjct: 145 HGVGSSVVNALSTRMEVEIARDRTVWKQVYERGKPVTKLEKVGAAPNRRGTQISFQPDPE 204

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVS 234
           IF    F    L    R  +FL   V I               P E T+ + GG+   ++
Sbjct: 205 IFGTHVFVPSRLYRLCRSKAFLFRGVTIRWSCDPALIKAGDETPAEATLHFPGGLADSLT 264

Query: 235 YLDRHKKPLMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                K PL+      +          DN  ++ A+ + +    +++ + N IP   GGT
Sbjct: 265 DELGPKAPLLTPLWAGEAPLPPAADGTDNGKVEWAVAFLEHGPASLVSYCNTIPTPQGGT 324

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G R+AL + + ++ ++   S K   ++  +D        LS+ + DP+F  QTKEKL
Sbjct: 325 HETGFRNALVKGLRAWGDQR--SIKKASAITAEDVLGMSAGRLSVFIRDPQFQGQTKEKL 382

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            SS    +VE+ + D    WL ++P +A  ++   ++ +  R   +  ++ T RK     
Sbjct: 383 TSSGASKLVETALRDRFDHWLAQNPPQADTLLGFAIERAEERLRRKEQKE-TPRKSATRR 441

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKL DC++     +E+FLVEGDSAGGSAKQ R+RE QA+LPLRGKILNV  A  +K
Sbjct: 442 LRLPGKLTDCTKEFAPDTEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASATAEK 501

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +QE+  LI ALG G G D FD++KLRY ++IIMTDADVDGAHI +LL+TFF+R++P 
Sbjct: 502 LRGNQELRDLIEALGCGSG-DRFDLSKLRYGRVIIMTDADVDGAHIASLLMTFFYRELPE 560

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           LI NG LY+ +PPLY +T+G    Y  D+   +  +  +  +         KG
Sbjct: 561 LIRNGHLYLAQPPLYRLTQGAKSVYAMDDADRDRKMKTEFKARGKIDVSRFKG 613



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI---TDASQADDLFSRLMGDEVE 786
            R  I + R+KGLGEM    L ETT++P  R+LLRV I    D          LMG + E
Sbjct: 602 ARGKIDVSRFKGLGEMPPGDLKETTMDPKRRTLLRV-ITPQEDRLSTRQRVESLMGRKPE 660

Query: 787 PRREFIQENSLPSA--LDI 803
            R  FIQE++      LD+
Sbjct: 661 LRFAFIQEHARTVDDLLDV 679


>gi|304404372|ref|ZP_07386033.1| DNA topoisomerase IV, B subunit [Paenibacillus curdlanolyticus YK9]
 gi|304346179|gb|EFM12012.1| DNA topoisomerase IV, B subunit [Paenibacillus curdlanolyticus YK9]
          Length = 657

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 260/614 (42%), Positives = 381/614 (62%), Gaps = 33/614 (5%)

Query: 1   MSDNI---------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51
           M++ +             YDAD IQIL+GL AV+KRP MYIG T   SGLHH+++E++DN
Sbjct: 1   MAEQVDLFAKESPSAERKYDADDIQILEGLTAVRKRPGMYIGSTSS-SGLHHLVWEIVDN 59

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           A+DE L  +   I VT++ D S +V DNGRGIPT +H + GI   +V+ T LHAGGKF  
Sbjct: 60  AVDEHLAKHCSAIDVTIHKDNSVSVKDNGRGIPTGMH-KSGIPTPQVVFTMLHAGGKFGG 118

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVV 161
             YK SGGLHGVG SV NALS WL++ I R+G +++  F            G     L +
Sbjct: 119 GGYKKSGGLHGVGASVTNALSEWLEVEIYRDGKVHKQRFEYWTDADGKEHVGEPVTGLTI 178

Query: 162 TGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G+  N TGT+VTF P   +F      N+D+L  RL+E++FLNS ++++L D+RS    E
Sbjct: 179 IGNT-NRTGTKVTFKPDGRVFQSGTTINFDSLSERLQEIAFLNSGLKVTLKDERSG--NE 235

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
           +   Y+GG + FV +L+  K  L    +     +D I +++A+++NDGY E +  F N+I
Sbjct: 236 VVFHYEGGAKQFVQFLNEDKTVLH-EVVHFAAEKDEIEVEIALQYNDGYTETIASFVNSI 294

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           P + GGTH +G ++A TR +  Y  K+   K+  +++ G+D REG   V++IKM +  F 
Sbjct: 295 PTRGGGTHETGFKTAYTRIMNDYARKNALLKEKDKNLEGNDLREGMMVVINIKMSEVEFV 354

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK++L S+  RS V++ V D ++ +LEE+P  A++++KK + AS  R+AAR+AR+  R
Sbjct: 355 GQTKDQLGSASARSAVDAVVTDKMAVFLEENPQAAQMLMKKAIQASKAREAARKAREEIR 414

Query: 401 R-KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
             K   + ++L GKL     +D  ++ELF+VEGDSAGGSAKQGR  ++QAILPL+GK +N
Sbjct: 415 SGKKKSESSNLGGKLTPAQSKDIARNELFIVEGDSAGGSAKQGRDSKHQAILPLKGKPMN 474

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            E+A+   +L + E   +I A+G G+G   FD  +  Y+KIIIMTDAD DGAHI+ LLLT
Sbjct: 475 PEKAKLLDILKNDEYKAIIAAIGAGVG-PEFDGEECNYNKIIIMTDADTDGAHIQVLLLT 533

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELF 575
           FF+R M  LI  G +YI +PPLY +TR     ++++Y   +E L++YL     + E    
Sbjct: 534 FFYRYMKPLIDAGKVYIAQPPLYKLTRKSGKLETVRYAWTDEQLQNYLKEFGKNYE-LQR 592

Query: 576 CDSKGVISKNDLRN 589
               G ++ + L  
Sbjct: 593 YKGLGEMNPDQLWE 606



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 5/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
             N E  + +++    +    +  I       + G   N + ++           +    
Sbjct: 472 PMNPEKAKLLDILKNDEYKAIIAAIGAGVGPEFDGEECNYNKIIIMTDADTDGAHIQVLL 531

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISM 736
             F +      I + ++      +  L     K++          L + +   G K   +
Sbjct: 532 LTFFYRYMKPLIDAGKVYIAQPPLYKLTRKSGKLETVRYAWTDEQLQNYLKEFG-KNYEL 590

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           QRYKGLGEMN  QLWETT+NP+TR+LL+V+I DA++A+   S LMGD+V+PR+ +I +N
Sbjct: 591 QRYKGLGEMNPDQLWETTMNPETRTLLQVQIEDAAKAERRVSTLMGDKVDPRKRWIIDN 649


>gi|71725920|gb|AAZ39078.1| gyrase subunit B [Exiguobacterium aurantiacum]
          Length = 512

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 266/514 (51%), Positives = 366/514 (71%), Gaps = 4/514 (0%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIG T    GLHH+++E++DN+IDE+L G+ + ITVT+    S  V D+GRGIP D+
Sbjct: 2   PGMYIGSTSS-RGLHHLVWEIVDNSIDEALAGHCETITVTVEPGNSIVVEDDGRGIPVDI 60

Query: 88  HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
            K+ G  A EVI T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ ++R GN+Y 
Sbjct: 61  QKKTGRPAVEVIFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVRRNGNVYY 120

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSV 206
            SF  G+    L + G   + TGT V F P  DIF    ++++D L  RLREL+FLN  +
Sbjct: 121 QSFKRGVPQGELEIVG-TTDKTGTTVRFFPDGDIFEETLEYDFDLLATRLRELAFLNKGL 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I   D+R  E  E    Y+GGI+++V +L+R K  + + P+ + G++D I +++A+++N
Sbjct: 180 RIIAKDERGDETIERNYHYEGGIKSYVEHLNRSKSSIHEEPVYVHGTKDGIEVEIALQYN 239

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           +G+  N+  FTNNIP  +GGTH +G ++ALTR I  Y ++    K+   S+ GDD REG 
Sbjct: 240 EGFASNIYSFTNNIPTHEGGTHETGFKTALTRSINDYAKRFGLMKEADGSLSGDDVREGL 299

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T+++S+K P P+F  QTK KL +++ R+  +S   D    +L E+P   ++IV K L A+
Sbjct: 300 TAIVSVKHPSPQFEGQTKTKLGNADARTATDSLFTDTFEQFLLENPSVGRLIVDKGLMAA 359

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AA+RAR++TRRKG+L+++SLPGKLADCS +D  KSEL++VEGDSAGGSAK GR R 
Sbjct: 360 RARLAAKRAREMTRRKGILEVSSLPGKLADCSSKDASKSELYIVEGDSAGGSAKSGRDRH 419

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILP+RGKI+NVE+AR DK+L +QE+ T+ITALGTGI  + FD++K RYHK+IIMTDA
Sbjct: 420 FQAILPIRGKIINVEKARLDKILGNQEVRTIITALGTGI-AEEFDLSKARYHKLIIMTDA 478

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           DVDGAHIRTLLLTFF+R M  LI +G++YI +PP
Sbjct: 479 DVDGAHIRTLLLTFFYRYMRPLIESGYVYIAQPP 512


>gi|308069402|ref|YP_003871007.1| topoisomerase IV subunit B [Paenibacillus polymyxa E681]
 gi|305858681|gb|ADM70469.1| Topoisomerase IV subunit B [Paenibacillus polymyxa E681]
          Length = 659

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 259/603 (42%), Positives = 375/603 (62%), Gaps = 24/603 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                S Y AD IQ+L+GL AV+KRP MYIG T   SGLHH+++E++DNA+DE L  +  
Sbjct: 14  TQSGASEYGADDIQVLEGLVAVRKRPGMYIGSTSS-SGLHHLVWEIVDNAVDEHLAKFCS 72

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T++ DGS TVSDNGRGIPT +H + GI   +V+ T LHAGGKF    YK SGGLHG
Sbjct: 73  RIDITMHKDGSITVSDNGRGIPTGMH-KTGIPTPQVVFTILHAGGKFGGSGYKKSGGLHG 131

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGTE 172
           VG SV NALS WL++ I R+G I+   F            G     L V G+  N TG++
Sbjct: 132 VGASVTNALSEWLEVEIYRDGKIHRQRFEYWQDKKGVEHVGEPTTGLEVLGNT-NKTGSK 190

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           +TF P   +F     FNYDTL  RL+E++FLNS ++I L D+RS +      FY+GG   
Sbjct: 191 ITFKPDIRVFQAGIHFNYDTLAERLQEIAFLNSGLRIQLKDERSGKS--DEYFYEGGASQ 248

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV++L+  K  L    I     +++I +++A+++N GY E +  F N+IP + GGTH +G
Sbjct: 249 FVAFLNEGKDVLH-DVIHFNAEKEDIEVEIAIQYNAGYTETIASFVNSIPTRGGGTHETG 307

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++A TR +  Y  K+   K+  +++ G+D REG  +V+S+KM +  F  QTK++L S+ 
Sbjct: 308 FKTAYTRVMNDYARKTVMLKEKDKNLEGNDLREGMMAVISVKMAEVEFVGQTKDQLGSAS 367

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASL 410
            RS V++ V++ +  +LEE+P  A+ ++KK + AS  R+AAR+ARD  R  K   + ++L
Sbjct: 368 ARSTVDAIVSEQMQRFLEENPQIAQTLIKKAVQASRAREAARKARDEMRSGKKRSESSNL 427

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
            GKL+    +D  ++ELF+VEGDSAGGSAKQGR  + QAILPL+GK +N E+++   ++ 
Sbjct: 428 NGKLSPAQSKDFTRNELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEKSKLADIMK 487

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           + E   +  A+G G+G   F +    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI 
Sbjct: 488 NDEYRAITAAIGAGVG-TEFSLEDSNYSKIIIMTDADTDGAHIQVLLLTFFYRYMKELID 546

Query: 531 NGFLYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            G ++I +PPLY ITR     ++++Y   +E L++YL     + E        G ++ + 
Sbjct: 547 AGRIFIAQPPLYKITRKSGKLETVRYAWTDEQLDNYLKEFGRNFE-LQRYKGLGEMNPDQ 605

Query: 587 LRN 589
           L  
Sbjct: 606 LWE 608



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 106/293 (36%), Gaps = 6/293 (2%)

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D  G+      +     +           I +  L       S       ++ ++    +
Sbjct: 361 DQLGSASARSTVDAIVSEQMQRFLEENPQIAQT-LIKKAVQASRAREAARKARDEMRSGK 419

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
             SE   L        SK+  RN +                  K      +     N E 
Sbjct: 420 KRSESSNLNGKLSPAQSKDFTRNELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEK 479

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
            +  ++    +       I       +    +N   ++           +      F + 
Sbjct: 480 SKLADIMKNDEYRAITAAIGAGVGTEFSLEDSNYSKIIIMTDADTDGAHIQVLLLTFFYR 539

Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISMQRYKGL 742
              + I + RI      +  +     K++          L + +   GR    +QRYKGL
Sbjct: 540 YMKELIDAGRIFIAQPPLYKITRKSGKLETVRYAWTDEQLDNYLKEFGR-NFELQRYKGL 598

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GEMN  QLWETT+NPD+R+LLRV+I DA++A+   S LMGD+V+PR+ +I EN
Sbjct: 599 GEMNPDQLWETTMNPDSRTLLRVQIEDAAKAERRVSTLMGDKVDPRKRWIVEN 651


>gi|260433138|ref|ZP_05787109.1| DNA topoisomerase IV, B subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416966|gb|EEX10225.1| DNA topoisomerase IV, B subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 652

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/644 (37%), Positives = 338/644 (52%), Gaps = 18/644 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YDA SI++L+GL+ V+KRP MYIG TD E  LHHM+ E+LDN++DE++ G+A+ I V 
Sbjct: 12  TTYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHMVAEILDNSMDEAVAGHANRIEVE 70

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ D S TV DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+ SGGLHGVG S
Sbjct: 71  LHEDYSLTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGAS 130

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + +++ R   +YE  F  GI   P+   G+A N  GT VTF    +IF    
Sbjct: 131 VVNALSDSMVVQVARNKELYEQRFSRGIPLGPVEKVGAAPNRRGTTVTFHADPEIFGHHR 190

Query: 187 FNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
           F    L   +R  ++L S V+I           P E T  + GG+  ++           
Sbjct: 191 FKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETPTEATFHFPGGLSDYLKETMNGSSTYA 250

Query: 245 QSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             P        +       ++ A+ W       +  + N +P  +GGTH++G  +A+ + 
Sbjct: 251 DQPFAGTVDFNEKFGTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVAGFWAAILKG 310

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y E     K  +  +  DD   G  +++S  + +P F  QTK++L + E + +VE+ 
Sbjct: 311 IKAYGELINNKKAAQ--ITRDDLITGGCALVSCFIREPEFVGQTKDRLATVEAQRLVENA 368

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D    WL      A  I+  ++         RR    T+RK       LPGKL DCS 
Sbjct: 369 VRDHFDNWLAADTKSAGAILDFLILR-AEERLRRRQEKETQRKTATKKLRLPGKLVDCSA 427

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            + + +ELF+VEGDSAGGSAK  R R+ QA+LPLRGKILNV  A   K+ ++ EI  L  
Sbjct: 428 TNREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGTNAEINDLTQ 487

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG G+G   F+++ LRY K+IIMTDADVDGAHI +LL+TFFF QM  +I  G LY+  P
Sbjct: 488 ALGVGLGSK-FNLDDLRYDKVIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLYLACP 546

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI---DDA 594
           PLY +T+G    Y  DE   + +L      +           G +   DL+         
Sbjct: 547 PLYRLTQGAKRVYCLDEAERDMWLKKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPKSR 606

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
             I   I +  P      +E+ +           + N     +L
Sbjct: 607 KLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENARFVEEL 650



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREF 791
           I + R+KGLGEM+A  L ETT++P +R L+RV I +    +  DL  RLMG + E R ++
Sbjct: 580 IDVSRFKGLGEMDAKDLKETTMDPKSRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQY 639

Query: 792 IQENSLPS-ALDI 803
           IQEN+     LD+
Sbjct: 640 IQENARFVEELDV 652


>gi|85716303|ref|ZP_01047276.1| gram negative topoisomerase IV, subunit B [Nitrobacter sp. Nb-311A]
 gi|85696819|gb|EAQ34704.1| gram negative topoisomerase IV, subunit B [Nitrobacter sp. Nb-311A]
          Length = 681

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 238/598 (39%), Positives = 339/598 (56%), Gaps = 16/598 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             + Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DNA+DE+L G+A  I 
Sbjct: 34  AETGYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNAMDEALAGHATFIV 92

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L  DG  TV+DNGRGIP D H +    SA EVIM  LH+GGKF+ K Y+ SGGLHGVG
Sbjct: 93  VELATDGFLTVTDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVG 152

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALSS L++ + R  N+Y+M+F  G     L   G   N  GT + F P ++IF +
Sbjct: 153 VSVVNALSSRLEVEVARSQNLYKMTFERGHPKGKLEDLGRIANRRGTTIRFKPDTEIFGA 212

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I               P E T  + GG++ +++   
Sbjct: 213 KAAFKPQRLFKMTRSKAYLFGGVEIRWRCAPELLKGLDDIPAEATFHFPGGLKDYLAAAI 272

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                +       +  R+  + + + A+ W       +  + N +P  DGGTH SGLRSA
Sbjct: 273 HKDTLVHPDIFSGKSGRNGAHGACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGLRSA 332

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E+    K+   S+  +D   G   +LS+ + +P F  QTK++L +SE   +
Sbjct: 333 LLRGLKDHAERVGYGKRA-ASITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATSEASRI 391

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + D    WL  +P++A  ++  V++ +  R   R  ++ T RK  +    LPGKLA
Sbjct: 392 VEQAIKDPFDHWLSGNPVQANKLLDFVIERADERLRRRAEKE-TSRKSAVKKLRLPGKLA 450

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+    + SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK+ ++ ++ 
Sbjct: 451 DCTNTATEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASATRDKVTANAQLA 510

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G G  ++    LRY ++IIMTDADVDGAHI +LL+TFF+RQMP LI  G LY
Sbjct: 511 DLIQALGCGTG-TNYREEDLRYSRVIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLY 569

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +  PPLY +T G    Y +D+   +  L ++  +         KG+     +   + +
Sbjct: 570 LAVPPLYRLTHGSKTVYARDDADKDALLKSEFNANAKVDVGRFKGL--GEMMPAQLKE 625



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 9/191 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     V+  ++LA+ +  +   +  ++         ++      V    +    
Sbjct: 492 ILNVASATRDKVTANAQLADLIQALGCGTGTNYREEDLRYSRVIIMTDADVDGAHIASLL 551

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS---IGRKGISMQ 737
             F +    + I    +      +  L      +         D +          + + 
Sbjct: 552 ITFFYRQMPRLIDEGHLYLAVPPLYRLTHGSKTVYARDDAD-KDALLKSEFNANAKVDVG 610

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R++LRV +   D     D   RLMG + E R  FI + 
Sbjct: 611 RFKGLGEMMPAQLKETTMDPAKRTMLRVMLLADDREDTADSVERLMGTKAEARFAFISDK 670

Query: 796 SLPSA---LDI 803
           +  ++   LD+
Sbjct: 671 AEFASEDMLDV 681


>gi|316934362|ref|YP_004109344.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris DX-1]
 gi|315602076|gb|ADU44611.1| DNA topoisomerase IV, B subunit [Rhodopseudomonas palustris DX-1]
          Length = 682

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 247/655 (37%), Positives = 349/655 (53%), Gaps = 26/655 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A  I 
Sbjct: 35  AEDGYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIE 93

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L  DG  TVSDNGRGIP D H +    SA EVIM  LHAGGKF+ K Y+ SGGLHGVG
Sbjct: 94  VELAADGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGGLHGVG 153

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALSS L++ + R   +  M F  G     L   G   N  GT V F P ++IF +
Sbjct: 154 VSVVNALSSRLEVEVARNQQLSRMVFERGHPKGKLESLGKVNNRRGTRVRFKPDTEIFGA 213

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I               P E    + GG++ F+    
Sbjct: 214 KAAFKPQRLFKMARSKAYLFGGVKIRWKCDPELLKGIEDVPAEDEFHFPGGLKDFLGAAI 273

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
            +   +       +  R+  + + + A+ W       +  + N +P  DGGTH SGLRSA
Sbjct: 274 HNDTLVHPDIFAGKAGRNGAHGACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGLRSA 333

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E++   K+   S+  +D   G   +LS+ + +P F  QTK++L ++E + +
Sbjct: 334 LLRGLKDHAERAGQGKRA-SSITSEDVMVGAAIMLSVFVREPEFQGQTKDRLATAEAQKI 392

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + D    WL  +P++A  ++  V++        RR      RK  +    LPGKLA
Sbjct: 393 VEQAIKDPFDHWLSGNPVQANKLLDFVVER-AEERLRRRQEKEISRKTAVKKLRLPGKLA 451

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+    + SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK++++ ++ 
Sbjct: 452 DCTSTAAEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKVVANAQLS 511

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G G  ++    LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI  G LY
Sbjct: 512 DLIQALGAGTG-VNYREEDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLY 570

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +  PPLY +T G    Y +D+   E+ L  +  +         KG+     +   +    
Sbjct: 571 LAVPPLYRLTHGAKTVYARDDAHKEELLKKEFNANAKVDVGRFKGL--GEMMPTQLK--- 625

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +  +        +  +      G  N      +   + +K   R  FI+EK+E
Sbjct: 626 --ETTMDPAKRTLLRVVLLADDRDGTAN-----SVERLMGTKAEARFAFISEKAE 673



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LLRV +   D     +   RLMG + E R  FI E 
Sbjct: 612 RFKGLGEMMPTQLKETTMDPAKRTLLRVVLLADDRDGTANSVERLMGTKAEARFAFISEK 671

Query: 796 SLPSA---LDI 803
           +  ++   LD+
Sbjct: 672 AEFASEEMLDV 682


>gi|323137127|ref|ZP_08072206.1| DNA topoisomerase IV, B subunit [Methylocystis sp. ATCC 49242]
 gi|322397485|gb|EFY00008.1| DNA topoisomerase IV, B subunit [Methylocystis sp. ATCC 49242]
          Length = 671

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 236/645 (36%), Positives = 350/645 (54%), Gaps = 19/645 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A SI++L+GL+ V++RP MYIG TD E+ +HH+  EVLDNA+DE++ G+A  I VTL
Sbjct: 28  EYSAASIEVLEGLEPVRRRPGMYIGGTD-ETAMHHLFAEVLDNAMDEAVAGHATFIEVTL 86

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
              G  TV+DNGRGIP   H +    SA EV+MT LHAGGKF+  +Y+ SGGLHGVGVSV
Sbjct: 87  EPGGWLTVTDNGRGIPVGPHPKMKDKSALEVVMTVLHAGGKFDSGAYQTSGGLHGVGVSV 146

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186
           VNALS  +++ +  E  +Y M F  G+    L   G   N  GT+V F P + IF     
Sbjct: 147 VNALSEKVEVEVAIEQQLYRMEFSRGLPLGKLERLGKVHNRRGTKVRFKPDAQIFGESAH 206

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDRHK 240
           +    L    R  ++L   V+I            S  P +  + + GG++ +++     K
Sbjct: 207 WKPARLFRMSRSKAYLFGGVEIRWRCDPSLIEPGSDTPADAVLRFPGGLKDYLAREVHGK 266

Query: 241 KPLMQSPIR--IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           + +   P    +     + S++ A+ W       V  + N +P  DGGTH +G R AL +
Sbjct: 267 EVVTDQPFTGKVTREGGHGSLEWAVSWLPEDDGFVHSYCNTVPTPDGGTHEAGFRLALLK 326

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + ++   +K+ K  V GDD      +++S+ + +P F  Q K +L+S E   +VES
Sbjct: 327 ALKDHADRVGQTKRAK-DVTGDDLMGQSAAMISVFIREPEFQGQNKSRLMSVEASRIVES 385

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D    WL   P +A  ++   ++ +  R   R  +D   RK       LPGKL DC+
Sbjct: 386 TVRDAFDHWLAAAPTQANKLLDFAVERAEERLRRRAEKD-IARKTATRKLRLPGKLVDCT 444

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
               + SELF+VEGDSAGGSAK+ R+R  QA+LPLRGKILNV  A  DK+L++Q++  L 
Sbjct: 445 NNSAQGSELFIVEGDSAGGSAKEARNRATQAVLPLRGKILNVASATKDKLLANQQLADLT 504

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG G+G   +   +LRY K+I+MTDADVDGAHI +LL+TFF+RQMP LI  G LY+ +
Sbjct: 505 QALGCGLGAH-YREEELRYDKVIVMTDADVDGAHIASLLITFFYRQMPKLIEKGHLYLAQ 563

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDD--- 593
           PPLY +T+G    Y +D +  ++ +      +           G +S   L+    D   
Sbjct: 564 PPLYKLTQGPKTVYARDNDHRDELIRTVLTGKGKIETSRFKGLGEMSAAQLKETTMDPTK 623

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
              +  +I+          +E+ + +      +  +   + A +L
Sbjct: 624 RTLLKVVIEGEDREETADCVERLMGNKPEARFAFIQEKAAFAVEL 668



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 8/190 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S  +  +    +LA+    +       +       D ++      V    +    
Sbjct: 483 ILNVASATKDKLLANQQLADLTQALGCGLGAHYREEELRYDKVIVMTDADVDGAHIASLL 542

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F +    K I    +      +  L      +          L+ T+ + G+  I   
Sbjct: 543 ITFFYRQMPKLIEKGHLYLAQPPLYKLTQGPKTVYARDNDHRDELIRTVLT-GKGKIETS 601

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM+A+QL ETT++P  R+LL+V I   D  +  D   RLMG++ E R  FIQE 
Sbjct: 602 RFKGLGEMSAAQLKETTMDPTKRTLLKVVIEGEDREETADCVERLMGNKPEARFAFIQEK 661

Query: 796 SLPSA--LDI 803
           +  +   LD+
Sbjct: 662 AAFAVELLDV 671


>gi|71894694|ref|YP_278802.1| DNA gyrase subunit B [Mycoplasma synoviae 53]
 gi|71851482|gb|AAZ44091.1| DNA gyrase subunit B [Mycoplasma synoviae 53]
          Length = 650

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/658 (37%), Positives = 371/658 (56%), Gaps = 25/658 (3%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M D  +   N+ Y+ADSI++L+GL+AV+ RP MYIG    ++GLHH+I+E++DN++DE L
Sbjct: 1   MEDKNKVQNNAEYNADSIEVLEGLEAVRMRPGMYIGS-KDKTGLHHLIWEIVDNSVDEVL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GYAD I +T+  DG  +V DNGRGIP D+H + G SA E++ T LHAGGKF   +YKVS
Sbjct: 60  AGYADNIKITITKDGGVSVEDNGRGIPVDMHSK-GKSALEIVFTGLHAGGKFKSDAYKVS 118

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG-NDTGTEVTF 175
           GGLHGVG SVVN LSS+L + +KR GN+Y   F + G L+ P+ V  + G N TGT+V F
Sbjct: 119 GGLHGVGASVVNGLSSYLGVWVKRNGNVYFAEFKDGGKLEAPIKVIETTGDNKTGTKVLF 178

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P   I    +F+ + +  R+R+ ++LN +++ISL D+R  +   +   Y  GI  F++ 
Sbjct: 179 YPDFTIMDKNEFDKNLIVDRIRQTAYLNKNLRISLSDER--DNSFVEFCYPNGILDFLTV 236

Query: 236 LDRH-KKPLMQSPIRIQG----SRDNISIDLAMRWNDG---YHENVLCFTNNIPQKDGGT 287
           + +          I  +G       ++ +++AMR+       +     +TNNI  K+GGT
Sbjct: 237 ITKSKNTLQNDELIYTEGIYQDKTGDVKVEIAMRYMASAAKSNAVAYAYTNNIYNKEGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G  + LTR   +Y +     K        +D       ++SIK  +P F  QTK KL
Sbjct: 297 HLNGFFNGLTRIWNNYAQDKKFFKTQGEKFSREDLENNLFLIISIKHNNPEFEGQTKHKL 356

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S      V    ++     L+++P  A+ ++K +LD    R          ++K  L  
Sbjct: 357 NSRNASPAVNKVFSEVFEKTLDQNPKFAEEVIKYLLDF-KARRLKDEKEKELQKKKGLGN 415

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           +SLPGKL+DCS ++ ++SEL++VEG+SAGGSAK GR R  QAILPL+GKILNVE+   +K
Sbjct: 416 SSLPGKLSDCSSKNAEESELYIVEGNSAGGSAKMGRDRHFQAILPLKGKILNVEKKDIEK 475

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L + EI +LI ALG G+G   F++NK+RY K+IIMTDAD DG+HIR LL+TFFF+    
Sbjct: 476 ILKNDEILSLIAALGAGVG-QDFNVNKVRYQKVIIMTDADSDGSHIRVLLITFFFKLFRQ 534

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKND 586
           LI  G LYI +PPLY I   K + Y  +E   E+ L +   S++I        G ++ + 
Sbjct: 535 LIEYGMLYIAQPPLYKIESNKKVYYAYNEAQKEEILDSLDKSKKIMIQRYKGLGEMNADQ 594

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           L         +D   +           +   +  +   E  +     +        + 
Sbjct: 595 LWET-----TMDPKTRKMLQVQVSDAEKAMEVLNILMGEETEPRKEFIFENAKKVRDI 647



 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 3/84 (3%)

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             +LD++    +K I +QRYKGLGEMNA QLWETT++P TR +L+V+++DA +A ++ + 
Sbjct: 567 EEILDSL-DKSKK-IMIQRYKGLGEMNADQLWETTMDPKTRKMLQVQVSDAEKAMEVLNI 624

Query: 780 LMGDEVEPRREFIQENSLPSALDI 803
           LMG+E EPR+EFI EN+     DI
Sbjct: 625 LMGEETEPRKEFIFENAKKVR-DI 647


>gi|239833957|ref|ZP_04682285.1| DNA topoisomerase IV, B subunit [Ochrobactrum intermedium LMG 3301]
 gi|239822020|gb|EEQ93589.1| DNA topoisomerase IV, B subunit [Ochrobactrum intermedium LMG 3301]
          Length = 732

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 236/570 (41%), Positives = 337/570 (59%), Gaps = 16/570 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I V+
Sbjct: 91  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVS 149

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            + DG  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 150 FDADGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 209

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  DIF    
Sbjct: 210 VVNALSDVLEVEVARNRRLYRQRFSRGIPQGGLEDVGEVHNRRGTRVRFHPDPDIFGKTA 269

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 270 QFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 329

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 330 EHQVTREVFAGKTEKQGGHGAVEWAVSWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 388

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 389 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVE 446

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 447 NAIRDPFDHWLTASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 505

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 506 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 565

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 566 IQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPDLIRNGHLYLA 624

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQS 567
            PPL+ +++G  + Y +DE   ++ L    
Sbjct: 625 VPPLFRLSQGGKVAYARDEAHKDELLRTMF 654



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 545 ILNVASAGREKLTANQQIADLIQALGCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 604

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F +      I +  +      +  L   G             LL T+F+ GR  + + 
Sbjct: 605 ITFFYQEMPDLIRNGHLYLAVPPLFRLSQGGKVAYARDEAHKDELLRTMFT-GRGKVEIG 663

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 664 RFKGLGEMRAEQLKETTMDPKKRTLLRVQVDEEYVDETRNTVDELMGTKPEARFRFIQDR 723

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 724 AAFVEELDI 732


>gi|15186713|dbj|BAB62879.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae]
          Length = 619

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/619 (40%), Positives = 372/619 (60%), Gaps = 16/619 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG TD  +GLHH+++E++DNA+DE+L G+ + I V +N DGS TV+D+GRG+PT +H 
Sbjct: 1   MYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVIINKDGSITVTDHGRGMPTGMHA 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
             G    EVI T LHAGGKF Q  YK SGGLHGVG SVVNALSSWL++ I R+G IY   
Sbjct: 60  -MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEIIRDGAIYRQR 118

Query: 150 FIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
           F N G     L   G+A    +GT V+F+P   +FS  DF ++T+  RL+E +FL  +V 
Sbjct: 119 FENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTIDFKFNTIAERLKESAFLLKNVT 178

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           ++L D RS E   +   Y+ G++ FV YL+  K+ L    +  +G      I++A+++ND
Sbjct: 179 LTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP-IMFFEGEEQEFHIEVALQYND 237

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G+ +N+L F NN+  KDGGTH +GL+SA+T+ +  Y  K+   K+  +++ G D REG +
Sbjct: 238 GFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYARKTGLLKEKDKNLEGSDYREGLS 297

Query: 328 SVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
           ++LSI +P+   +F  QTK+KL S   R +V+  V++ L+ +L E+   A  +++K + A
Sbjct: 298 AILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEKLTYFLMENGDLASNLIRKAIKA 357

Query: 386 SMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
              R+AAR+ARD     +K   D   L GKL     ++ KK+EL+LVEGDSAGGSAKQGR
Sbjct: 358 RDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGR 417

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            R+ QAILPLRGK+LN  +A+   ++ ++EI T+I  +G G+G   F+I+ + Y K+IIM
Sbjct: 418 DRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTIGAGVG-PDFNIDDINYDKVIIM 476

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE--- 560
           TDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPLY +++GK  + + +    +   
Sbjct: 477 TDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIEL 536

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDALKIDKLIKDFYPNHDKTFIEQAV 617
           + L  +     +       G ++ + L       +    I   I+D      +  +    
Sbjct: 537 EELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGD 596

Query: 618 ISGVFNCESDQEINVSLAS 636
                    +  +  +L  
Sbjct: 597 KVPPRRQWIEDNVKFTLEE 615



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735
            + +F  +Y R                         +I       + L+ +     KG  
Sbjct: 489 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 548

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   + LMGD+V PRR++I++N
Sbjct: 549 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 608


>gi|293363914|ref|ZP_06610650.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
           alligatoris A21JP2]
 gi|292552404|gb|EFF41178.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
           alligatoris A21JP2]
          Length = 637

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 248/595 (41%), Positives = 351/595 (58%), Gaps = 19/595 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N   ++Y A +I  LKGL+AV+KRP MYIG TD  +GLHH+++E++DN+IDE+L G+
Sbjct: 1   MSNN---NTYTAKNITQLKGLEAVRKRPGMYIGSTD-VNGLHHLVWEIVDNSIDEALAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A+ I+V L +DGS T+ DNGRGIP     E G SA E++ T LHAGGKFN+ +YK SGGL
Sbjct: 57  ANKISVKLGIDGSVTIEDNGRGIPVGK-TESGRSAVELVFTELHAGGKFNEGAYKTSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+ + + + R+GN Y   F    +     V G +    GT+V F P  D
Sbjct: 116 HGVGSSVVNALSTKVVVTVYRDGNEYLTEFCQDKILKKTQVVGKSKKV-GTKVQFWPDYD 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F     NYD +  RL+E  FL S+++I L D+ +      T  +  GI AF+       
Sbjct: 175 FFKRAKLNYDVISERLKESCFLISNLEIKLYDESTSTS--ETFRFSDGIAAFLG-FVNDS 231

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           K  +   I    SR  I +D   ++ D Y+E ++ F NN+  +DGGTH +GL++ALT+  
Sbjct: 232 KSAITQAITFNDSRKGIEVDCGFQYTDSYNELIVSFVNNVKTRDGGTHETGLKTALTKVF 291

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             +  +    K +K      D REG + +LS+K+P+    F  QTK+KL + + + VVE 
Sbjct: 292 NDFGIEEGVLK-NKNVFEPSDIREGLSVILSLKVPEKLLEFVGQTKDKLGTPDAKGVVEE 350

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL--DIASLPGKLAD 416
            V   L  W+ EH   AK ++ K+  A  +R+  ++ R   R+   +  D   L  KL  
Sbjct: 351 LVTKHLKMWIIEHKQLAKKVLDKIKRAYEIRNEEKKQRQELRKTKSILKDKPILSDKLTP 410

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              + P++ ELFLVEGDSAGGSAK GR R  QAILPLRGK++NVE+++   +L + EIGT
Sbjct: 411 AQSKKPEEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINVEKSKLIDILKNTEIGT 470

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I ++G G G++ FD++K +Y KIIIMTDAD DGAHI+ LLLTF +R M  LI  G +YI
Sbjct: 471 IINSIGAGYGKE-FDLSKAQYGKIIIMTDADTDGAHIQILLLTFLYRYMKPLIEAGKVYI 529

Query: 537 IKPPLYGITRGKS--LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             PPLY  +      + Y  DE  L++ L                G ++ + L  
Sbjct: 530 ALPPLYKASNKAKNLVYYAWDESELKEILSK--PGSWEIQRYKGLGEMNADQLWE 582



 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 11/201 (5%)

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             +        +   V N E  + I++   +++   +N I     K +  S      ++ 
Sbjct: 439 RRYQAIL---PLRGKVINVEKSKLIDILKNTEIGTIINSIGAGYGKEFDLSKAQYGKIII 495

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCS 721
                     +     + +F  +Y +      +           +     +         
Sbjct: 496 MTDADTDGAHI--QILLLTFLYRYMKPLIEAGKVYIALPPLYKASNKAKNLVYYAWDESE 553

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L + +   G     +QRYKGLGEMNA QLWETT+NP TRS+++V + D + A+   S LM
Sbjct: 554 LKEILSKPG--SWEIQRYKGLGEMNADQLWETTMNPATRSIIKVTMEDITLAERRVSTLM 611

Query: 782 GDEVEPRREFIQENSLPSALD 802
           G+    R+ +I ++   S  D
Sbjct: 612 GNNASLRKNWIDKHVDFSNED 632


>gi|162447245|ref|YP_001620377.1| DNA topoisomerase IV subunit B [Acholeplasma laidlawii PG-8A]
 gi|161985352|gb|ABX81001.1| DNA topoisomerase IV, subunit B [Acholeplasma laidlawii PG-8A]
          Length = 651

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 252/591 (42%), Positives = 359/591 (60%), Gaps = 20/591 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD  SIQIL+GL+AV+KRP MYIG TD   GLHH+++E++DNA+DE L G+   I
Sbjct: 1   MAKTNYDETSIQILEGLEAVRKRPGMYIGSTD-HRGLHHLVWEIVDNAMDEVLAGFGSEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF-NQKSYKVSGGLHGV 123
           TVT+  D +  V D+GRG+P   H   G+   +VI T LHAGGKF    +YKV+GGLHGV
Sbjct: 60  TVTIKPDNAIEVLDDGRGMPYKKH-TSGVPTTQVIFTVLHAGGKFGGDGAYKVAGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALSS L++ + ++G I+   F N G         G     TGT+V F P   IF
Sbjct: 119 GSSVVNALSSVLEVTVYKDGGIFRQRFENGGKKIFNQEKIGDTK-KTGTQVYFKPDPSIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   +NYDT++ RL+E ++L   ++I+LID+R+ +    T  +  GI+A+V +++  K  
Sbjct: 178 STTLYNYDTIKERLKESAYLIKGLKINLIDERNNKK--ETFKFDEGIKAYVEFMNTGKNA 235

Query: 243 LMQ----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           L                 I +++A+++ D Y EN++ F NN+  KDGGTH  G +SALT+
Sbjct: 236 LHDVTDVEGTFNTAKDSAIEVEVALQYTDSYSENIISFVNNVRTKDGGTHEIGFKSALTK 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
            I  Y  K    K+   ++ G D REG T+++S+++P+    F  QTK KL + E R+ +
Sbjct: 296 VINDYARKYNHIKEKDSNIDGVDIREGLTAIVSLRIPETVLEFEGQTKGKLGTPEARNAL 355

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414
           E+   +  + +LEE+   A  I+ K + A+  R+AAR+AR+  R  +K       L GKL
Sbjct: 356 ETVFYEKFNTFLEENSDAALSIITKAVAAANAREAARKAREEARAGKKRSKKEVILSGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                +D   +ELFLVEGDSAGGSAKQGR+R  QAILPLRGK++N ER   + +L ++EI
Sbjct: 416 TPAQGKDKSINELFLVEGDSAGGSAKQGRNRRFQAILPLRGKVINTERTNTETILKNEEI 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  +G   G+D FDI K  Y+K+IIMTDAD DGAHI+TLLLTFFFR M  LI  G L
Sbjct: 476 STMIYTIGADFGED-FDIKKCNYNKVIIMTDADDDGAHIQTLLLTFFFRYMRPLIEAGRL 534

Query: 535 YIIKPPLYGI----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           YI +PP Y +     + +   Y   +E L++ L +   +  I  F     +
Sbjct: 535 YIAQPPFYKVTYKKNKKEETVYAWSDEDLKETLESIGQNYMITRFKGLGEM 585



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIG 730
               L  +  F +           I +     ++   N  +  +       L +T+ SIG
Sbjct: 512 HIQTLLLTFFFRYMRPLIEAGRLYIAQPPFYKVTYKKNKKEETVYAWSDEDLKETLESIG 571

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           +    + R+KGLGEMN  QLWETT+NP++R+L++V I D + +D   S LMGD+V PRRE
Sbjct: 572 Q-NYMITRFKGLGEMNFYQLWETTMNPESRTLIQVTIDDLNVSDKHISVLMGDQVAPRRE 630

Query: 791 FIQEN 795
           +I+ N
Sbjct: 631 WIEAN 635


>gi|75675845|ref|YP_318266.1| DNA topoisomerase IV subunit B [Nitrobacter winogradskyi Nb-255]
 gi|74420715|gb|ABA04914.1| DNA topoisomerase IV subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 685

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 238/598 (39%), Positives = 337/598 (56%), Gaps = 16/598 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             + Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DNA+DE+L G+A  I 
Sbjct: 38  AEADYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNAMDEALAGHATFIV 96

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L  DG  TV+DNGRGIP D H +    SA EVIM  LH+GGKF+ K Y+ SGGLHGVG
Sbjct: 97  VELAADGFLTVTDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVG 156

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALSS L++ + R  N+Y M+F  G     L   G   N  GT + F P ++IF +
Sbjct: 157 VSVVNALSSHLEVEVARSQNLYRMTFERGHPKGKLEDLGRIANRRGTTIRFKPDTEIFGA 216

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I               P E T  + GG++ +++   
Sbjct: 217 KAAFKPQRLFKMTRSKAYLFGGVEIRWRCAPELLKGLEDLPPEATFHFPGGLKDYLAAAI 276

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                +       +  R+  + + + A+ W       +  + N +P  DGGTH SGLRSA
Sbjct: 277 HKDTLVHPDIFSGRSGRNGAHGACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGLRSA 336

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E+    K+   S+  +D   G   +LS+ + +P F  QTK++L ++E   +
Sbjct: 337 LLRGLKDHAERVGQGKRA-GSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEASRI 395

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + D    WL  +P +A  ++  V++ +  R   R  ++ T RK  +    LPGKLA
Sbjct: 396 VEQAIKDPFDHWLSGNPAQANRLLDFVIERADERLRRRAEKE-TSRKSAVKKLRLPGKLA 454

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+    + SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK+ ++ ++ 
Sbjct: 455 DCTNTATEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVVSATRDKVTANAQLA 514

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G G  ++    LRY ++IIMTDADVDGAHI +LL+TFF+RQMP LI  G LY
Sbjct: 515 DLIQALGCGTG-TNYREEDLRYSRVIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLY 573

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +  PPLY +T G    Y +DE   +  L ++  +         KG+     +   + +
Sbjct: 574 LAVPPLYRLTHGSKTVYARDEAHKDALLKSEFNANAKVDVGRFKGL--GEMMPAQLKE 629



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R++LRV +   D     D   RLMG + E R  FI + 
Sbjct: 615 RFKGLGEMMPAQLKETTMDPAKRTMLRVMLLAEDREDTADSVERLMGTKAEARFAFISDK 674

Query: 796 SLPSA---LDI 803
           ++ ++   LD+
Sbjct: 675 AVFASEDMLDV 685


>gi|91976956|ref|YP_569615.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB5]
 gi|91683412|gb|ABE39714.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB5]
          Length = 684

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 245/655 (37%), Positives = 353/655 (53%), Gaps = 26/655 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             + Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A  I 
Sbjct: 37  AEAGYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIE 95

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L  DG  TVSDNGRGIP D H +    SA EVIM  LHAGGKF+ K Y+ SGGLHGVG
Sbjct: 96  VELTTDGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGGLHGVG 155

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALSS L++ + R   +Y M F  GI    L   G   N  GT V F P +DIF +
Sbjct: 156 VSVVNALSSLLEVEVARGQQLYRMVFARGIPQGKLESLGKINNRRGTRVRFKPDADIFGA 215

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I               P E T  + GG++ ++    
Sbjct: 216 KAAFKPQRLFKMARSKAYLFGGVEIRWKCDPELLKGLEDVPAEDTFHFPGGLKDYLGAAI 275

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                +       +  R+  + + + A+ W       +  + N +P  DGGTH SG+RSA
Sbjct: 276 HADTLVHPDIFSGKSGRNGAHGACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGMRSA 335

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E+    K+   S+  +D   G   +LS+ + +P F  QTK++L ++E + +
Sbjct: 336 LLRGLKDHAERVGQGKRA-SSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQRI 394

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + D    WL  +P++A  ++  V++ +      RR      RK  +    LPGKLA
Sbjct: 395 VEQAIKDPFDHWLSGNPVQANKLLDFVVERA-EERLRRRQEKEISRKTAVKKLRLPGKLA 453

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+    + SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK++++ ++ 
Sbjct: 454 DCTNTAAEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASATKDKVVANAQLS 513

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L+ A+G G G  ++    LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI  G LY
Sbjct: 514 DLMQAIGCGTG-VNYREEDLRYARIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLY 572

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +  PPLY +T G    Y +D+    + L  +  +         KG+     +   + +  
Sbjct: 573 LAVPPLYRLTHGAKTVYARDDAHKAELLKKEFNANAKVDVGRFKGL--GEMMPAQLKET- 629

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                      +  K  + + V+       +   +   + +K   R  FI++K+E
Sbjct: 630 ---------TMDPAKRTLLRVVLLPDDREGTADSVERLMGTKAEARFAFISDKAE 675



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LLRV +   D     D   RLMG + E R  FI + 
Sbjct: 614 RFKGLGEMMPAQLKETTMDPAKRTLLRVVLLPDDREGTADSVERLMGTKAEARFAFISDK 673

Query: 796 SLPSA---LDI 803
           +  ++   LD+
Sbjct: 674 AEFASEDLLDV 684


>gi|260575737|ref|ZP_05843734.1| DNA topoisomerase IV, B subunit [Rhodobacter sp. SW2]
 gi|259022135|gb|EEW25434.1| DNA topoisomerase IV, B subunit [Rhodobacter sp. SW2]
          Length = 653

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 240/650 (36%), Positives = 338/650 (52%), Gaps = 18/650 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S +  +++Y A SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDNA+DE++ G+A
Sbjct: 7   SGDHASNAYMASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNAMDEAVAGHA 65

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             I V L+ D + TV DNGRGIP D H +  G SA EVI   LH+GGKF+ K+Y+ SGGL
Sbjct: 66  SRIEVELHADYALTVRDNGRGIPVDPHPKFPGKSALEVIFCTLHSGGKFSGKAYETSGGL 125

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  +++ + R   +Y  SF  GI   PL   G A N  GT VTF P +D
Sbjct: 126 HGVGASVVNALSDVMRVEVARNKELYAQSFSRGIPQGPLQKIGPAPNRRGTSVTFHPDAD 185

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVSYLDR 238
           IF         L    R  ++L S V+I           P+E    + GG+  ++     
Sbjct: 186 IFGSLHLKPARLLKMARSKAYLFSGVEIRWKSAVSDGETPQEAVFHFPGGLSDYLGEQLA 245

Query: 239 HKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                                   S++ A+ W       +  + N +P  +GGTH +G  
Sbjct: 246 KTTTYADRPFAGKVSFPDKFNVPGSVEWAINWTPARDGFLQSYCNTVPTPEGGTHETGFW 305

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SA+ + I +Y +      +    +  DD   G  +++S+ + +P+F  QTK++L + E  
Sbjct: 306 SAILKGIRAYGD--LVKNRKAELISRDDMLTGGCALISVFIREPQFVGQTKDRLSTEEAA 363

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VE  V D    WL      A  I+  ++  +  R   R+ ++ T RK       LPGK
Sbjct: 364 RYVELAVRDHFDNWLASDTKSAGAILDFLVLRAEERLKRRQEKE-TARKTATKKLRLPGK 422

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DCS +  + +ELF+VEGDSAGGSAK  R RE QAI+PL+GKILNV  A   K+  + E
Sbjct: 423 LTDCSSKTREGTELFIVEGDSAGGSAKGARERETQAIMPLKGKILNVLGAASSKLNENSE 482

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  +  ALG  +G   F ++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  LI  G 
Sbjct: 483 IRDICEALGVQMG-TRFKVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGH 541

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI 591
           LY+  PPLY +T+G    YV D+   E++L      +           G +   DL++  
Sbjct: 542 LYLACPPLYRLTQGAKRMYVSDDAEKEEWLAKGLGGKGKIDVQRFKGLGEMDAKDLKDTT 601

Query: 592 ---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
              +    I   I +  P      +E+ +           + N     +L
Sbjct: 602 MNPETRKLIRVSIDEDEPGETSDLVERLMGKKPELRFQYIQENARFVEEL 651



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 5/188 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N        ++  S++ +    +  +    +       D ++      V    +    
Sbjct: 466 ILNVLGAASSKLNENSEIRDICEALGVQMGTRFKVDDLRYDKIIIMTDADVDGAHIASLL 525

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKG-ISMQR 738
             F F      I    +      +  L     ++ ++      + +   +G KG I +QR
Sbjct: 526 MTFFFTQMRPLIDRGHLYLACPPLYRLTQGAKRMYVSDDAEKEEWLAKGLGGKGKIDVQR 585

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM+A  L +TT+NP+TR L+RV I +    +  DL  RLMG + E R ++IQEN+
Sbjct: 586 FKGLGEMDAKDLKDTTMNPETRKLIRVSIDEDEPGETSDLVERLMGKKPELRFQYIQENA 645

Query: 797 LPS-ALDI 803
                LD+
Sbjct: 646 RFVEELDV 653


>gi|217976614|ref|YP_002360761.1| DNA topoisomerase IV subunit B [Methylocella silvestris BL2]
 gi|217501990|gb|ACK49399.1| DNA topoisomerase IV, B subunit [Methylocella silvestris BL2]
          Length = 698

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/597 (40%), Positives = 336/597 (56%), Gaps = 16/597 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y A SI++L+GL+ V++RP MYIG TD E+ LHH+  EVLDNA+DE++ G+A  I V
Sbjct: 51  EAGYTAASIEVLEGLEPVRRRPGMYIGGTD-EAALHHLFAEVLDNAMDEAVAGHASFIDV 109

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           + +  G  +V+DNGRGIP D H +    SA EVIMT LHAGGKF+  +Y+ SGGLHGVGV
Sbjct: 110 SYDAAGFLSVTDNGRGIPVDPHPKFPKKSALEVIMTTLHAGGKFDSGAYQTSGGLHGVGV 169

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV- 184
           SVVNALS  L++ + R   +Y  SF  G     L   G A N  GT V F P   IF   
Sbjct: 170 SVVNALSESLEVEVARGQTLYRQSFARGKPLGRLEEVGKAPNRRGTRVRFTPDPQIFGKG 229

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDR 238
             F    L    R  ++L   V+I               PRE    + GG++ F++    
Sbjct: 230 AQFKPARLVKMARAKAYLFGGVEIRWRCAPERIEPGSSTPREAVFHFPGGLKDFLAVDIE 289

Query: 239 HKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            K+ +++     +  +   + S++ A+ W       V  + N IP  DGG H +GLR+AL
Sbjct: 290 GKERVIEPIFAGKIEKPGGHGSLEWALAWLAMDDGFVHSYCNTIPTPDGGAHEAGLRAAL 349

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            R +  + E+   S++   ++  DD      +++SI + +P F  Q K +L+S+E   +V
Sbjct: 350 LRGLKDHAERIGQSRRA-AAISADDVMGSCAALVSIFIREPEFQGQNKSRLMSAEASRIV 408

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +  V D    WL   P  A  ++   ++ +  R   R  +D   RK       LPGKLAD
Sbjct: 409 DQTVRDAFDHWLAAAPSHALKLLDWAVERAEDRLRRRAEKD-VARKTASRKLRLPGKLAD 467

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS    + SELF+VEGDSAGGSAKQGR+R +QAILPLRGKILNV  A  DK+ ++Q++  
Sbjct: 468 CSNTAAQGSELFIVEGDSAGGSAKQGRNRASQAILPLRGKILNVASATRDKLAANQQLSD 527

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L+ ALG G+G   +  ++LRY KIIIMTDADVDGAHI +LL+TFF+RQ P LI  G LY+
Sbjct: 528 LMLALGCGVGAH-YREDELRYEKIIIMTDADVDGAHIASLLITFFYRQTPKLIEGGHLYL 586

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
             PPLY +T+G    Y +D+   ++ +               KG+     L   + +
Sbjct: 587 AVPPLYRLTQGARQVYARDDAHRDELIARVLTGRGKIEISRFKGL--GEMLPAQLKE 641



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 6/185 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   +L++ +  +       +       + ++      V    +    
Sbjct: 508 ILNVASATRDKLAANQQLSDLMLALGCGVGAHYREDELRYEKIIIMTDADVDGAHIASLL 567

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F +    K I    +      +  L     ++          L+  + + GR  I + 
Sbjct: 568 ITFFYRQTPKLIEGGHLYLAVPPLYRLTQGARQVYARDDAHRDELIARVLT-GRGKIEIS 626

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LLRV +   D     D   RLMG++ E R  FIQE 
Sbjct: 627 RFKGLGEMLPAQLKETTMDPGKRNLLRVVVLPEDREGTSDSVERLMGNKPEARFAFIQER 686

Query: 796 SLPSA 800
           +  + 
Sbjct: 687 AAFAN 691


>gi|312116002|ref|YP_004013598.1| DNA topoisomerase IV subunit beta [Rhodomicrobium vannielii ATCC
           17100]
 gi|311221131|gb|ADP72499.1| DNA topoisomerase IV, B subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 691

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 234/596 (39%), Positives = 335/596 (56%), Gaps = 17/596 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            SY A  I++L+GL+ V++RP MYIG TD E  +HH+  EV+DNA+DE++ GYA  I V 
Sbjct: 36  ESYTAADIEVLEGLEPVRRRPGMYIGGTD-EKAMHHLFAEVIDNAMDEAVAGYASFIEVA 94

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ DG+ +V+DNGRGIP D H +  G SA EVIMT LH+GGKFN K Y  SGGLHGVG+S
Sbjct: 95  LDADGTLSVADNGRGIPIDPHPKYPGKSALEVIMTTLHSGGKFNSKVYSTSGGLHGVGIS 154

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNAL+  L++ + R G +Y  +F  G+  + L   G   N  GT V F P  +IF    
Sbjct: 155 VVNALAEKLEVEVARNGKLYRQTFARGLPTSKLEDVGVVRNRRGTTVRFHPDPEIFKERA 214

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F    +    R  ++L   V+I               P +    + GG+  F+S     
Sbjct: 215 TFRPVRIFKMARAKAYLFGGVEIRWTCAPELLKGDADVPEKAVFHFPGGLRDFLSSRIEK 274

Query: 240 KKPLMQSPIR--IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              + +      +Q    + S++ A+ W       +  + N +P  +GGTH +GLR+ALT
Sbjct: 275 LTTVTKDVFSGRVQKEGGHGSVEWAIAWIADDDGFMQSYCNTVPTPEGGTHEAGLRAALT 334

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + + +Y E +   +  +  V  DD      ++LS+   +P F  QTK++L S+E   +VE
Sbjct: 335 KSLRAYGELTNNKRAAQ--VTADDVFVASGAMLSVFFREPEFQGQTKDRLSSAEAARIVE 392

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + V D    WL   P +A  +++ V++ +  R   RR ++ T+R+       LPGKLADC
Sbjct: 393 NTVKDAFDHWLTASPQQANGLLEFVIERAEERLRKRREKE-TQRQKATRRLRLPGKLADC 451

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S+     +E+F+VEGDSAGGSAKQ R R  QAILPLRGKILNV  A  DK+  +Q +  L
Sbjct: 452 SKNAKDDTEIFIVEGDSAGGSAKQARDRATQAILPLRGKILNVASASRDKLAQNQLLSDL 511

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ALG G G+  +    LRY ++IIMTDADVDGAHI +LL+TFF+RQMP LI NG L++ 
Sbjct: 512 TLALGCGTGKH-YIDTDLRYDRVIIMTDADVDGAHIASLLITFFYRQMPDLIRNGHLFLA 570

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
            PPLY +++G    Y +D+  L +                 KG+     +   + +
Sbjct: 571 VPPLYRLSQGGKTAYARDDAHLAELKRTVFNGRGKLEVSRFKGL--GEMMPAQLKE 624



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 20/172 (11%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K +  +    D ++      V    +      F +      I +  +      +  L   
Sbjct: 521 KHYIDTDLRYDRVIIMTDADVDGAHIASLLITFFYRQMPDLIRNGHLFLAVPPLYRLSQG 580

Query: 711 GDKIKITG---PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           G             L  T+F+ GR  + + R+KGLGEM  +QL ETT++   R +LRV+I
Sbjct: 581 GKTAYARDDAHLAELKRTVFN-GRGKLEVSRFKGLGEMMPAQLKETTMDRKKRMMLRVEI 639

Query: 768 -------------TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
                        ++ + A ++  +LMG++ E R  FIQE +  +   ALDI
Sbjct: 640 AGRGGDLNGVDTKSEETAAAEVVEQLMGNKPEARFRFIQERAAFAEPEALDI 691


>gi|254504091|ref|ZP_05116242.1| DNA topoisomerase IV, B subunit [Labrenzia alexandrii DFL-11]
 gi|222440162|gb|EEE46841.1| DNA topoisomerase IV, B subunit [Labrenzia alexandrii DFL-11]
          Length = 691

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 244/653 (37%), Positives = 354/653 (54%), Gaps = 28/653 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  I V+
Sbjct: 50  SDYSAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHATWIDVS 108

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L  DG   ++DNGRGIP D H +    SA EVIMT LHAGGKF+ K Y+ SGGLHGVGVS
Sbjct: 109 LGADGYLNITDNGRGIPVDPHPKFKDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVS 168

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L + + R   +Y   F  G    PL   G   N  GT V F P   IF    
Sbjct: 169 VVNALSDELVVEVARSRKLYRQIFRRGHPQGPLEHIGDTQNRRGTMVRFKPDEMIFGKGA 228

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDRH 239
            F    L    R  ++L   V+I          ++   P E    + GG+  F+      
Sbjct: 229 KFQPARLLKMARSKAYLFGGVEIRWHCAPELLSEKDETPAEAVFHFPGGLRDFLKERLGK 288

Query: 240 KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           ++P++      +  +   + +++ A+ W  G    +  + N +P  +GGTH +G R AL 
Sbjct: 289 ERPVVDEVFSGRTDKTGKHGAVEWAVSWFAG-DGFINSYCNTVPTPEGGTHEAGFRYALL 347

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E           + GDD       +LS+ + +P F  QTK+KL ++E   V E
Sbjct: 348 RGLKAYGELVNNK--KASIITGDDVMTSAGGMLSVFIREPEFVGQTKDKLATNEATRVAE 405

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + V D    WL   P +A  +++ V+D +  R   R+ +D   RK  +    LPGKLADC
Sbjct: 406 TAVRDAFDHWLTASPNQANKLLEWVIDRAEERLRRRQEKD-VARKTAVRKLRLPGKLADC 464

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S    + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  DK++++Q++  L
Sbjct: 465 STSQSEGTELFIVEGDSAGGSAKQARNRSNQAILPLRGKILNVANAGRDKLVANQQLADL 524

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALG G  + S+    LRY +I+IMTDADVDGAHI +LL+TFF+R+MP LI  G LY+ 
Sbjct: 525 IQALGCGT-RSSYAEKDLRYERIVIMTDADVDGAHIASLLITFFYREMPELIRGGHLYLA 583

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
            PPLY +++G    Y +D+   ++ L      +        KG+     L   +      
Sbjct: 584 VPPLYRLSQGGKTLYARDDMHKDELLATVFKGKSKVEIGRFKGL--GEMLPAQLK----- 636

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           +  +     +  K  +++  I+     +++  +   + +K   R  FI + +E
Sbjct: 637 ETTMDPSKRSLLKVRVDELAIA-----DTNDTVERLMGNKPEARFRFIQDNAE 684



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  +     +    +LA+ +  +   +  S+       + +V      V    +    
Sbjct: 504 ILNVANAGRDKLVANQQLADLIQALGCGTRSSYAEKDLRYERIVIMTDADVDGAHIASLL 563

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I    +      +  L   G  +          LL T+F  G+  + + 
Sbjct: 564 ITFFYREMPELIRGGHLYLAVPPLYRLSQGGKTLYARDDMHKDELLATVFK-GKSKVEIG 622

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD--DLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  RSLL+V++ + + AD  D   RLMG++ E R  FIQ+N
Sbjct: 623 RFKGLGEMLPAQLKETTMDPSKRSLLKVRVDELAIADTNDTVERLMGNKPEARFRFIQDN 682

Query: 796 SLPS-ALDI 803
           +  +  LDI
Sbjct: 683 AEFADDLDI 691


>gi|269799044|gb|ACZ43800.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 487

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 299/489 (61%), Positives = 382/489 (78%), Gaps = 4/489 (0%)

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLH
Sbjct: 1   TDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLH 60

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS + 
Sbjct: 61  GVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHET 119

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K 
Sbjct: 120 FTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKT 178

Query: 242 PLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 179 PINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTL 238

Query: 301 TSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
            +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  
Sbjct: 239 NNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQA 298

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLADC E
Sbjct: 299 MGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQE 358

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 359 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 418

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +P
Sbjct: 419 AMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQP 478

Query: 540 PLYGITRGK 548
           PLY + +GK
Sbjct: 479 PLYKMKKGK 487


>gi|163838775|ref|YP_001623180.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209]
 gi|162952251|gb|ABY21766.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209]
          Length = 702

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 262/600 (43%), Positives = 368/600 (61%), Gaps = 29/600 (4%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + S YDA  I +L+GL+AV+KRP MYIG T G  GLHH+I EV+DN++DE+L GY   I 
Sbjct: 37  EESHYDASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLITEVVDNSVDEALAGYCTHIE 95

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +TL  DG   V D+GRGIP D+H  EG    EV+MT LHAGGKF    Y VSGGLHGVG+
Sbjct: 96  ITLQADGGVRVDDDGRGIPVDMHPTEGKPTVEVVMTVLHAGGKFGGGGYAVSGGLHGVGI 155

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           SVVNALS+ ++  +KR+G  +  SF + G     L   G   ++TGT   F     IF  
Sbjct: 156 SVVNALSTRVETTVKRQGFAWHQSFADGGQPVGTLRK-GEPTDETGTTQLFYADGSIFES 214

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------------------PREITMFYK 226
            +++++TL+ R ++ SFLN  ++I+L D+R  E                   R++   Y 
Sbjct: 215 TEYDFETLRARFQQYSFLNKGLRITLTDERVTESVEEEIASDAESAEDTPAHRQVIYQYD 274

Query: 227 GGIEAFVSYLDRHK--KPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNN 279
            G+  +V+YL+  K  + +    I  +         +I+++LAM+W   Y E+V  + N 
Sbjct: 275 NGLIDYVTYLNSSKKVEVINPDVIAFESENKDLNGRSIALELAMQWTTAYSESVHTYANT 334

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+A+T  I  Y  +    K+   ++ GDD REG T+V+S+K+ +P+F
Sbjct: 335 INTHEGGTHEEGFRAAMTSLINRYAREKNIIKEKDENLTGDDIREGLTAVISVKLSEPQF 394

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE +  V+  V D L  WLE +P  A+ +++K + A+  R AAR+AR+ T
Sbjct: 395 EGQTKTKLGNSEAKGFVQRVVTDELGDWLERNPGPARDVIRKSIQAAQARLAARKAREST 454

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG+L+   +PGKL DC  +DP KSE++LVEGDSAGGSA +GR+ E QAILPLRGKILN
Sbjct: 455 RRKGLLESGGMPGKLKDCQSKDPSKSEIYLVEGDSAGGSAVRGRNPETQAILPLRGKILN 514

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VERAR D+ L + E+  +ITA G GIG+D FD+ K RYHKI++M DADVDG HI TLLLT
Sbjct: 515 VERARLDRALGNAEVQAMITAFGAGIGED-FDVEKARYHKIVLMADADVDGQHITTLLLT 573

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             FR M  L+ +G++Y+ +PPLY I    +       +   D  + +  +    +  D+ 
Sbjct: 574 LLFRYMRPLVEHGYVYLAQPPLYRIKWSNAPHDYVYSDKERDEALTKGAAAGHRIPKDNG 633



 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ ++LWETT++PD R+LL+V + DA+ AD  FS LMG++VE RR FIQ N
Sbjct: 634 IQRYKGLGEMDYTELWETTMDPDHRTLLQVTMDDAASADQTFSILMGEDVESRRHFIQTN 693

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 694 AKDVRFLDI 702


>gi|27379466|ref|NP_770995.1| DNA topoisomerase IV subunit B [Bradyrhizobium japonicum USDA 110]
 gi|27352618|dbj|BAC49620.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 681

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/598 (39%), Positives = 338/598 (56%), Gaps = 16/598 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             + Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A  I 
Sbjct: 34  AEADYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIG 92

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L+ DG  TV+DNGRGIP D H +    SA EVIM  LH+GGKF+ K Y+ SGGLHGVG
Sbjct: 93  VELSADGFLTVTDNGRGIPIDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVG 152

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           +SVVNALSS L++ + R   +Y M+F  G     L   G   N  GT V F P +DIF +
Sbjct: 153 ISVVNALSSLLEVEVARSQKLYRMTFERGHPKGKLEDLGKINNRRGTRVRFKPDTDIFGA 212

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I               P E T  + GG++ +++   
Sbjct: 213 KAAFKPQRLFKMTRSKAYLFGGVEIRWNCAPELLKGIDDVPAEATFHFPGGLKDYLAAAI 272

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                +       +  R+  + + + A+ W       +  +TN +P  DGGTH SGLRSA
Sbjct: 273 HADTLVHPDIFSGKSGRNGAHGACEWAVAWTADADGFLSSYTNTVPTPDGGTHESGLRSA 332

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E+    K+   S+  +D   G   +LS+ + +P F  QTK++L ++E + +
Sbjct: 333 LLRGLKDHAERVGQGKRA-SSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQRI 391

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + D    WL  +P +A  ++  V+D +  R   R+ ++ T RK       LPGKLA
Sbjct: 392 VEQAMKDPFDHWLSGNPNQANKLLDFVIDRAEERLRRRQEKE-TARKTAGKKLRLPGKLA 450

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS+   + SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK+ ++ ++ 
Sbjct: 451 DCSDAGTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTANAQLS 510

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L+ A+G G     +    LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI  G L+
Sbjct: 511 DLVQAIGCGT-LAQYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLF 569

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +  PPLY +T G    Y +D+   E  + ++  +         KG+     +   + +
Sbjct: 570 LAVPPLYKLTHGSKSVYARDDAHKEALIKSEFNANAKVEVNRFKGL--GEMMPAQLKE 625



 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREF 791
           + + R+KGLGEM  +QL ETT++P  R++L+V +   D     D   RLMG + E R  F
Sbjct: 607 VEVNRFKGLGEMMPAQLKETTMDPAKRTMLKVVLLADDRDTTADSVERLMGTKAEARFAF 666

Query: 792 IQENSLPSA---LDI 803
           I + +  +    LD+
Sbjct: 667 ISDKAEFANEDLLDV 681


>gi|148377448|ref|YP_001256324.1| topoisomerase IV subunit B [Mycoplasma agalactiae PG2]
 gi|148291494|emb|CAL58880.1| Topoisomerase IV subunit B [Mycoplasma agalactiae PG2]
          Length = 641

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 278/652 (42%), Positives = 379/652 (58%), Gaps = 24/652 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + NS+YDA SIQ LKGL+AV+KRP MYIG TD  +GLHH+I+E++DN+IDE+L G  + I
Sbjct: 4   MSNSNYDASSIQQLKGLEAVRKRPGMYIGSTD-VNGLHHLIWEIVDNSIDEALAGETNEI 62

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS  VSDNGRGIP       G SA E++ T LHAGGKFN+ +YK SGGLHGVG
Sbjct: 63  IVILKKDGSVVVSDNGRGIPVGKTPS-GKSAVELVFTELHAGGKFNEGAYKTSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS+ LK  + R+ +IYE  F NG        + GS  N  GT + F P+ +IF 
Sbjct: 122 SSVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGST-NKRGTSIQFWPNYEIFK 180

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN++T+  RLRE SFL S++ I LID++S   R     Y  GI+AFV +++  K  L
Sbjct: 181 KAKFNFETIAERLRESSFLISNLSIKLIDEQSE--RSEEFKYSNGIKAFVEFINDSKTAL 238

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +    +   + I I+   ++ DG++E +L F NN+  +DGGTH  GL+SA+T+    +
Sbjct: 239 F-NVYSFKQVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAITKTFNDF 297

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
                  K  K +  G+D REG T VLS+K+P+    F SQTK+KL + E +S VE  V+
Sbjct: 298 ALDEKVLK-GKNTFDGEDVREGLTVVLSVKIPEKYLEFVSQTKDKLGTPEAKSAVEEAVS 356

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIA-SLPGKLADCSE 419
             L  W+ E+   AK I+ K+  AS  R++AR+AR   R+ K  L     L GKL     
Sbjct: 357 KNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQILSGKLTPAQT 416

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++ K+ ELFLVEGDSAGGSAK GR R  QAILPLRGK++N E+AR   +L ++EI T+I 
Sbjct: 417 KNVKEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDILKNEEINTIIN 476

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G GIG   FDINK++Y K+IIMTDAD DGAHI+ LLLTFFF  M  LI  G +YI  P
Sbjct: 477 AIGAGIG-QDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFIHMRRLIEEGKVYIALP 535

Query: 540 PLYG--ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           PL+   I + K       +E+    L+   +           G ++ + L          
Sbjct: 536 PLFKLTINKAKKEILYAWDENELKELLQTKMKNAEVQRYKGLGEMNADQLW--------- 586

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           +  +        +  I+ A ++         +   S    +   +NF  E  
Sbjct: 587 ETTMNPETRTLIQVRIQDAALAERRVSTLMGDNVESRKEWINKNVNFTLEDD 638



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 111/288 (38%), Gaps = 11/288 (3%)

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           ++ +     + + + I      I K  L  I R    +    +  LE      +L E+  
Sbjct: 348 KSAVEEAVSKNLKTWITENK-QIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQI 406

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
           L        +KN     +                  +      +   V N E  + I++ 
Sbjct: 407 LSGKLTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDIL 466

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
              ++   +N I     + +  +    D ++           +      F F    + I 
Sbjct: 467 KNEEINTIINAIGAGIGQDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFIHMRRLIE 526

Query: 694 SNRIEENYLTILSLICNGDKIKI------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747
             ++      +  L  N  K +I           LL T          +QRYKGLGEMNA
Sbjct: 527 EGKVYIALPPLFKLTINKAKKEILYAWDENELKELLQTKMKNAE----VQRYKGLGEMNA 582

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
            QLWETT+NP+TR+L++V+I DA+ A+   S LMGD VE R+E+I +N
Sbjct: 583 DQLWETTMNPETRTLIQVRIQDAALAERRVSTLMGDNVESRKEWINKN 630


>gi|153954762|ref|YP_001395527.1| DNA topoisomerase IV subunit B [Clostridium kluyveri DSM 555]
 gi|219855226|ref|YP_002472348.1| hypothetical protein CKR_1883 [Clostridium kluyveri NBRC 12016]
 gi|146347620|gb|EDK34156.1| GyrB2 [Clostridium kluyveri DSM 555]
 gi|219568950|dbj|BAH06934.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 649

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/607 (38%), Positives = 345/607 (56%), Gaps = 22/607 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M D I +  YD +S+  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   G+
Sbjct: 1   MGDKISSV-YDVNSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D + V LN DGS +V DNGRGIPT  H     +  E++ T LH GGKFN   YK SGGL
Sbjct: 59  GDKVCVILNEDGSVSVIDNGRGIPTGTHPVTKKNGVEMVFTSLHTGGKFNNDIYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169
           HGVG +VVNALSSW+++ +K+ G+IY+  F             G     L + G+  +DT
Sbjct: 119 HGVGGAVVNALSSWMEVEVKQNGHIYKQKFEYAYDSTLKKIMPGTPVTGLEIIGNT-DDT 177

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+VTF+P + +FS  DF  D ++ RL+EL+F N  + + LI        E       G+
Sbjct: 178 GTKVTFMPDNKVFSTVDFKLDIIEERLKELAFQNKGITLKLIHWEEKNKVEKEYHSDRGL 237

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
             F+ YL+  K PL + PI  QG R    I    ++ +++ D    ++  + NNIP  + 
Sbjct: 238 LDFIEYLNESKTPLHKEPILFQGERSVEGIKMKGEVCIQFTDSTTYHIASYVNNIPTTES 297

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH SG ++ +TR    + +K    K+  R   G+D REG T+++ + + +P F  QTK 
Sbjct: 298 GTHESGFKTGMTRAFKEWAKKLNLIKEKDREFEGEDLREGMTAIVKVSINNPVFEGQTKT 357

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SE  +++       LS W+E++   A II+   L A+  R+  ++  D  ++K   
Sbjct: 358 KLGNSEAYTIMNELSYTKLSEWIEDNKNTASIIINNALHAAARREKIKKINDAEKKKIGK 417

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             A L GK+A C+ +D  K E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + 
Sbjct: 418 GAAPLAGKIAVCTLKDSSKCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 477

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + +L S+E+    TA+GTGI ++ ++   L+Y KIII++DADVDG HIR L +T+ +R M
Sbjct: 478 ENVLGSEELKIFNTAIGTGILKN-YNEKDLKYDKIIILSDADVDGYHIRALWMTYIYRYM 536

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVI 582
             LI NG LYI  PPLY + +    + V      ++ L+        + +       G +
Sbjct: 537 RELILNGHLYIALPPLYKVYKQVRGKEVVKYAYSDNQLLQAKREIGPKALIQRYKGLGEM 596

Query: 583 SKNDLRN 589
           + + L +
Sbjct: 597 NPDQLWD 603



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 701 YLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
              +   +   + +K       LL     IG K + +QRYKGLGEMN  QLW+TTLNP++
Sbjct: 552 LYKVYKQVRGKEVVKYAYSDNQLLQAKREIGPKAL-IQRYKGLGEMNPDQLWDTTLNPES 610

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+L ++ I D  +A+ + S LMGD V PR++++ +++
Sbjct: 611 RTLQQITIDDVIKAEKMVSLLMGDVVAPRKKYMYKHA 647


>gi|300854105|ref|YP_003779089.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528]
 gi|300434220|gb|ADK13987.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528]
          Length = 649

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 341/574 (59%), Gaps = 18/574 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  + + YD +S+  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   G+ D
Sbjct: 2   EGKERNVYDVNSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWELLDNAIDEISNGFGD 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
              VTLN DGS +V DNGRGIPT +H  +  +  E++ T LH GGKFN   YK SGGLHG
Sbjct: 61  RAYVTLNKDGSVSVQDNGRGIPTGIHPVKKKNGVEMVFTELHTGGKFNNSVYKTSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDTGT 171
           VG +VVNALS+W+++ ++++G++Y+  F             G     + V G+  +DTGT
Sbjct: 121 VGAAVVNALSTWMEVEVRQKGHVYKQRFEYAYDKSLKKNMPGTPVTAIKVIGNT-DDTGT 179

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           +VTF+P + +FS  DF  D +  RL+EL+F N  + + LID    E  E     + G+  
Sbjct: 180 KVTFMPDNKVFSTTDFKIDVIDERLKELAFQNKGITLKLIDNTGEERVEREYHSERGLLD 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           F+ YL+  K P+ + PI  +G R    +    ++ M++ D    ++  + NNIP  + GT
Sbjct: 240 FIDYLNESKTPIHKDPILFEGERKINDLSMYGEVCMQFTDSTTYHIASYVNNIPTTESGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SG ++ +TR    + +K    K+  +   GDD REG T+++ IK+ +P F  QTK KL
Sbjct: 300 HESGFKTGMTRAFKEWAKKLNLLKEKDKEFEGDDLREGMTAIVKIKITNPIFEGQTKTKL 359

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E  +++       LS W+E++   A  I+   L A+  R+  ++  D  ++K     
Sbjct: 360 GNTEAYTMMNDLAYTKLSEWIEDNKDIASAIINNALHAAARREKIKKINDAEKKKIGKGA 419

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A L GK+A C+ +D  K E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + + 
Sbjct: 420 APLAGKVAVCTLKDSSKCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLEN 479

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L S+E+    TA+GTGI  ++++ + LRY KIII++DADVDG HIR+L +T+ +R M  
Sbjct: 480 VLGSEELKIFNTAIGTGI-LENYNESDLRYDKIIILSDADVDGYHIRSLWMTYIYRYMRQ 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           LI NG LYI  PPLY + +    + V      ++
Sbjct: 539 LISNGHLYIALPPLYKVYKQNKGKEVIKYAYSDE 572



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 13/152 (8%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIF--SNRIEENYLTILSLI 708
            + N SD+   +I   +     ++G  I S    +  +Y R    +  +      +  + 
Sbjct: 499 ENYNESDLRYDKII--ILSDADVDGYHIRSLWMTYIYRYMRQLISNGHLYIALPPLYKVY 556

Query: 709 CNGDKIKI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
                 ++        +L D    IG KG+ +QRYKGLGEMN  QLWETTLNP+TR+L +
Sbjct: 557 KQNKGKEVIKYAYSDETLPDAKKKIG-KGVLVQRYKGLGEMNPDQLWETTLNPETRTLQQ 615

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           + I DA++A+ + S LMGD V PR++++ + +
Sbjct: 616 ITIDDAAKAEKMVSLLMGDVVAPRKKYMYKYA 647


>gi|85705733|ref|ZP_01036830.1| DNA topoisomerase IV subunit B [Roseovarius sp. 217]
 gi|85669723|gb|EAQ24587.1| DNA topoisomerase IV subunit B [Roseovarius sp. 217]
          Length = 662

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 235/647 (36%), Positives = 329/647 (50%), Gaps = 18/647 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S YDA SIQ+L+ ++ V+ RP MYIG  D    LHHM+ E++DN++DE++ G+A  I
Sbjct: 19  TPKSDYDASSIQVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIIDNSMDEAVAGHATWI 77

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
            V L+ +G  +V DNGRGIP D H +    SA E+I   L+AGGKF+  SY+ SGGLHGV
Sbjct: 78  EVELHANGHVSVRDNGRGIPVDPHPKDPKKSALEIIFCTLNAGGKFSGDSYQTSGGLHGV 137

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS  L++ + R   +Y M F  G+   PLV  G+A N  GT VTF P  +IF 
Sbjct: 138 GSSVVNALSDHLRVEVARNRELYMMEFSRGMPQAPLVKIGAAPNRRGTSVTFHPDPEIFG 197

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFVSYLDRHKK 241
                   L    R  ++L S V+I    + +    P E T  + GG+  ++        
Sbjct: 198 SLTLKPARLFKMARSKAYLFSGVEIRWKTEITDGETPTEATFKFPGGLADYLGETLNGAT 257

Query: 242 PLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
              + P                ++ A+ W       +  + N +P  +GGTH +G  +A+
Sbjct: 258 TYAERPFAGTVDFRDKYNVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEAGFWAAI 317

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + I +Y E S    +    +  +D   G  +++S  + +P F  QTK++L +++   +V
Sbjct: 318 LKGIKAYGELSN--NRKAAQITREDLLAGGCALVSCFIREPEFVGQTKDRLATTDAARMV 375

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  V D    WL      A  I+  ++         RR    T+RK       LPGKL D
Sbjct: 376 EGAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETQRKTATKKLRLPGKLVD 434

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS    + +ELF+VEGDSAGGSAK GR R+ QA+LPLRGKILNV  A   K+ S+QEI  
Sbjct: 435 CSSSTREGTELFIVEGDSAGGSAKMGRDRKIQALLPLRGKILNVLGAASSKLGSNQEIND 494

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI  LL+TFFF QM  +I  G LY+
Sbjct: 495 LTQALGVGLG-TKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLYL 553

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI--- 591
             PPLY +T+G    Y  DE   + +L      +           G +   DL+      
Sbjct: 554 ACPPLYRLTQGSKRVYCLDEAERDVWLAKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDP 613

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                I   I +  P      +E+ +             N     +L
Sbjct: 614 RSRKLIRVTIDEDEPGQTSDLVERLMGKKPELRFQYISENARFVEEL 660



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I +  +      +  L     ++     
Sbjct: 514 YDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLYLACPPLYRLTQGSKRVYCLDE 573

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I + R+KGLGEM+A  L ETT++P +R L+RV I +    Q  D
Sbjct: 574 AERDVWLAKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPRSRKLIRVTIDEDEPGQTSD 633

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++I EN+     LD+
Sbjct: 634 LVERLMGKKPELRFQYISENARFVEELDV 662


>gi|307946858|ref|ZP_07662193.1| DNA topoisomerase IV, B subunit [Roseibium sp. TrichSKD4]
 gi|307770522|gb|EFO29748.1| DNA topoisomerase IV, B subunit [Roseibium sp. TrichSKD4]
          Length = 682

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/598 (40%), Positives = 340/598 (56%), Gaps = 18/598 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  I 
Sbjct: 39  EAGDYSAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHATWID 97

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           VTL  DG  T+ DNGRGIP D H +    SA EVIMT LHAGGKF+ K Y+ SGGLHGVG
Sbjct: 98  VTLGADGYLTIVDNGRGIPVDPHPKFVDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVG 157

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALS  L + + R   +Y   F  G    PL + G   N  GT V F P  +IF  
Sbjct: 158 VSVVNALSEDLVVEVARTRKLYRQQFQRGRPVAPLELVGDTHNRRGTSVRFKPDPEIFGK 217

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F  + L    R  ++L   V+I    +          P E    + GG++ F++   
Sbjct: 218 SAGFKPERLLKMARSKAYLFGGVEIRWHCEPALIKEKDETPTEAVFHFPGGLKDFLAERL 277

Query: 238 RHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             ++ ++      +  +   + S++ A+ W  G    V  + N +P  +GGTH +GLR A
Sbjct: 278 EKERRVVDDIFAGRTDKAGSHGSVEWAVSWFAG-DGFVNSYCNTVPTPEGGTHETGLRYA 336

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R + +Y E +   K     + GDD       +LS+ + +P F  QTK+KL ++E   +
Sbjct: 337 LMRGLKAYGELTNNKKAA--IITGDDILTSAGGMLSVFIREPEFVGQTKDKLATNEATRI 394

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
            E+ V D    WL   P +A  +++ V+D +  R   R+ +D   RK  +    LPGKLA
Sbjct: 395 TENAVRDAFDHWLTASPNQANKLLEWVIDRAEDRLRRRKEKD-VARKTAVRKLRLPGKLA 453

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS      +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  DK+ ++Q++ 
Sbjct: 454 DCSANQSDGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVANAGRDKLAANQQLA 513

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G  + S+  + LRY KII+MTDADVDGAHI +LL+TFFFR+MP +IHNG LY
Sbjct: 514 DLIQALGCGT-RSSYRDDDLRYEKIIVMTDADVDGAHIASLLITFFFREMPEMIHNGHLY 572

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +  PPLY +T+G    Y +D+   ++ L      +        KG+     L   + +
Sbjct: 573 LAVPPLYRLTQGGKTLYARDDTHKDELLAKAFKGKGKIDIGRFKGL--GEMLPAQLKE 628



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  +     ++   +LA+ +  +   +  S+       + ++      V    +    
Sbjct: 495 ILNVANAGRDKLAANQQLADLIQALGCGTRSSYRDDDLRYEKIIVMTDADVDGAHIASLL 554

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG---ISMQ 737
             F F    + I +  +      +  L   G  +         D + +   KG   I + 
Sbjct: 555 ITFFFREMPEMIHNGHLYLAVPPLYRLTQGGKTLYARDDTH-KDELLAKAFKGKGKIDIG 613

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LL+V +      +      RLMG++ E R  FIQEN
Sbjct: 614 RFKGLGEMLPAQLKETTMDPTRRTLLKVGVESGFEKETGTTVDRLMGNKPEARFRFIQEN 673

Query: 796 SLPSA-LDI 803
           +  +  LDI
Sbjct: 674 AEFAEDLDI 682


>gi|323450751|gb|EGB06631.1| hypothetical protein AURANDRAFT_29093 [Aureococcus anophagefferens]
          Length = 698

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 285/673 (42%), Positives = 385/673 (57%), Gaps = 38/673 (5%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
                +Y A  I +L+GL+AV+KRP MYIG T G  GLHH+ +E+LDN+IDE + G+A  
Sbjct: 32  EATTGAYGAGQITVLEGLEAVRKRPGMYIGST-GPKGLHHLCFEILDNSIDEVMAGHATK 90

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ--KSYKVSGGLH 121
           + V L  DGSC V D+GRGIP DLH + G SA E ++  LHAGGKF      Y+VSGGLH
Sbjct: 91  VAVELRADGSCAVGDDGRGIPCDLHPQTGKSALETVLCVLHAGGKFGGAESGYRVSGGLH 150

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSD 180
           GVG+SVVNALS  L + + R+G++  M+F  G     +    +A    TGT V F P  D
Sbjct: 151 GVGLSVVNALSHQLDVEVTRDGSVASMAFSRGTPTGDMTRVDAAPGAATGTRVVFSPDGD 210

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---------PREITMFYKGGIEA 231
           IF    F+YD L  R+ EL+FLN+ V++SL D R P+         PR     + GGI  
Sbjct: 211 IFEKTVFDYDVLAARMDELAFLNAGVELSLTDFREPKKKKKKGDGGPRVDVFRHDGGISE 270

Query: 232 FVSYLDRHKKPLM-------------QSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFT 277
           +  +L   K PL              +     +G++D + ++ A+RW +D Y E  + F 
Sbjct: 271 YADFLTSEKTPLHAALGPSVTKGKHTKEAFVARGTKDGVEVECALRWSSDAYAEVTVSFA 330

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   DGGTH+ GLRS + R + +  ++S   K D   V G+  REG T+VL + +P+P
Sbjct: 331 NGIRTADGGTHVDGLRSVVARSVNAAAKRSPSGKSDNAYVPGEYVREGLTAVLLVNVPEP 390

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
            F  QTK +L S  VR VV++ V   L    E HP   K IV K L A     AA+ ARD
Sbjct: 391 EFEGQTKTRLGSPGVRQVVDAVVGAALQQLFEWHPQALKAIVDKALAAQKAAGAAKAARD 450

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP----L 453
           L RRK +L    LPGKLADCS RD   SE+F+VEGDSA GSAKQGR RE+QAILP    L
Sbjct: 451 LVRRKSLLATTVLPGKLADCSLRDAALSEIFIVEGDSAAGSAKQGRDRESQAILPLRAVL 510

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGKILNVE+   +++  + E+  LI+ALG G+  + F+ + LRYH+I+IMTDADVDGAHI
Sbjct: 511 RGKILNVEKCAPERIYLNAELQALISALGLGVRGEEFNRDNLRYHRIVIMTDADVDGAHI 570

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           R L+LTFF+R   SLI +G ++I  PPLY ++RG+   Y   ++ LE  L      +   
Sbjct: 571 RALILTFFYRYQRSLIEDGHVFIACPPLYKVSRGRKDTYCWSDDDLEAALAGD--GKATI 628

Query: 574 LFCDSKGVISKNDLRNFIDD--ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                 G +  N L     D  A K+ +++ D     DK      ++ G    E  + I 
Sbjct: 629 QRFKGLGEMMPNQLWATTMDPTARKMQQVVVDDAAKADKVIT---LLMGDSVAERKEYIV 685

Query: 632 VSLASKLANRLNF 644
            +  +  A  L+F
Sbjct: 686 ANSVALDAEDLDF 698



 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIF----SFGSKYKRIFSNRIEENYLTILSLI-- 708
              N  ++   RI   +     ++G+ I     +F  +Y+R                   
Sbjct: 545 EEFNRDNLRYHRIV--IMTDADVDGAHIRALILTFFYRYQRSLIEDGHVFIACPPLYKVS 602

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                        L   +   G+   ++QR+KGLGEM  +QLW TT++P  R + +V + 
Sbjct: 603 RGRKDTYCWSDDDLEAALAGDGK--ATIQRFKGLGEMMPNQLWATTMDPTARKMQQVVVD 660

Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN--SLPSA-LD 802
           DA++AD + + LMGD V  R+E+I  N  +L +  LD
Sbjct: 661 DAAKADKVITLLMGDSVAERKEYIVANSVALDAEDLD 697


>gi|153010978|ref|YP_001372192.1| DNA topoisomerase IV subunit B [Ochrobactrum anthropi ATCC 49188]
 gi|151562866|gb|ABS16363.1| DNA topoisomerase IV, B subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 704

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/568 (41%), Positives = 339/568 (59%), Gaps = 16/568 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +  +  Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ 
Sbjct: 59  SSASDDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANF 117

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I V+ + DG  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHG
Sbjct: 118 IEVSFDADGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHG 177

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  DIF
Sbjct: 178 VGVSVVNALSDMLEVEVARNRRLYRQRFSRGIPQGGLEELGEVHNRRGTRVRFHPDPDIF 237

Query: 183 SVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSY 235
                F+   L    R  ++L   V+I      S        P +    + GG++ ++  
Sbjct: 238 GKTAQFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEA 297

Query: 236 LDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
               +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR
Sbjct: 298 SLGKEHQVTREIFAGKTEKQGGHGAVEWAVSWFGG-DGFVHSYCNTIPTGDGGTHEAGLR 356

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E +
Sbjct: 357 IALTRGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQ 414

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VE+ + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGK
Sbjct: 415 RIVENAIRDPFDHWLTASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGK 473

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+
Sbjct: 474 LADCTQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQ 533

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  L+ ALG+G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG 
Sbjct: 534 ISDLVQALGSGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPDLIRNGH 592

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLED 561
           LY+  PPL+ +++G  + Y +DE   ++
Sbjct: 593 LYLAVPPLFRLSQGGKVAYARDEAHKDE 620



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++++ +  +   + K++       D ++      V    +    
Sbjct: 517 ILNVASAGREKLTANQQISDLVQALGSGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 576

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F +      I +  +      +  L   G             LL T+F+ GR  + + 
Sbjct: 577 ITFFYQEMPDLIRNGHLYLAVPPLFRLSQGGKVAYARDEAHKDELLRTVFT-GRGKVEIG 635

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 636 RFKGLGEMRAEQLKETTMDPKKRTLLRVQVDEEYIDETRNTVDELMGTKPEARFRFIQDR 695

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 696 AAFVEELDI 704


>gi|251796502|ref|YP_003011233.1| DNA topoisomerase IV subunit beta [Paenibacillus sp. JDR-2]
 gi|247544128|gb|ACT01147.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. JDR-2]
          Length = 656

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 265/616 (43%), Positives = 388/616 (62%), Gaps = 31/616 (5%)

Query: 1   MSDNI--------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           M++ +           +Y+AD IQ+L+GL AV+KRP MYIG T   SGLHH+++E++DNA
Sbjct: 1   MAEQVDLFAKTAAPERNYEADDIQVLEGLTAVRKRPGMYIGSTSS-SGLHHLVWEIVDNA 59

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           +DE L  +   I VTL+ +G+ TV DNGRGIPT +H + GI   +V+ T LHAGGKF   
Sbjct: 60  VDEHLAKFCTAIDVTLHKNGAVTVQDNGRGIPTGMH-KTGIPTPQVVYTILHAGGKFGGG 118

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVT 162
            YK SGGLHGVG SV NALS WL++ I R+G I++M F            G     L +T
Sbjct: 119 GYKKSGGLHGVGASVTNALSEWLEVEIFRDGKIHKMRFEYWVDNKGKEHVGEPVTGLEIT 178

Query: 163 GSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           G+  N TGT+VTF P   +F      NYDTL  RL+E++FLNS +++++ D RS +    
Sbjct: 179 GNT-NRTGTKVTFKPDGRVFQGGTSLNYDTLAERLQEIAFLNSGLKVTIKDDRSGKE--D 235

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GG   FV YL+  K  L    +   G +D I +++A+++NDGY E +  F N+IP
Sbjct: 236 IFHYEGGARQFVQYLNDDKTVLH-DVVHFAGEKDEIEVEVALQYNDGYTETIASFVNSIP 294

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            + GGTH +G ++A TR +  Y  K+   K+ ++++ G+D REG  SV++IKM +  F  
Sbjct: 295 TRGGGTHETGFKTAYTRVMNEYARKAGLLKEKEKNLEGNDLREGMMSVINIKMSEVEFVG 354

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK++L S+  RS V++ V+D +  +LEE+P  A++++KK + AS  R+AAR+AR+  R 
Sbjct: 355 QTKDQLGSASARSAVDAVVSDKMQVFLEENPQVAQMLLKKAVQASKAREAARKAREEIRS 414

Query: 402 -KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
            K   + ++L GKL     +D  ++ELF+VEGDSAGGSAKQGR  ++QAILPL+GK +N 
Sbjct: 415 GKKKSESSNLNGKLTPAQSKDFSRNELFIVEGDSAGGSAKQGRDSKHQAILPLKGKPMNP 474

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+A+   +L ++E   +I+A+G G+G   FD  +  Y+KIIIMTDAD DGAHI+ LLLTF
Sbjct: 475 EKAKLLDILKNEEYKAIISAIGAGVG-PEFDAEECNYNKIIIMTDADTDGAHIQVLLLTF 533

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFC 576
           F+R M  LI  G +YI +PPLY ITR     ++++Y   +E L++YL     + E++ + 
Sbjct: 534 FYRYMKPLIDTGRVYIAQPPLYKITRKSGKLETVRYAWTDEQLQNYLKEFGKNFELQRYK 593

Query: 577 DSKGVISKNDLRNFID 592
               +         +D
Sbjct: 594 GLGEMNPDQLWETTMD 609



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 109/293 (37%), Gaps = 6/293 (2%)

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D  G+      +         +       + +  L    +    +     ++ E+    +
Sbjct: 358 DQLGSASARSAVDAVVSDKMQVFLEENPQVAQMLLKKAVQASKAREA-ARKAREEIRSGK 416

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
             SE   L        SK+  RN +                  K      +     N E 
Sbjct: 417 KKSESSNLNGKLTPAQSKDFSRNELFIVEGDSAGGSAKQGRDSKHQAILPLKGKPMNPEK 476

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
            + +++    +    ++ I       +     N + ++           +      F + 
Sbjct: 477 AKLLDILKNEEYKAIISAIGAGVGPEFDAEECNYNKIIIMTDADTDGAHIQVLLLTFFYR 536

Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISMQRYKGL 742
                I + R+      +  +     K++          L + +   G K   +QRYKGL
Sbjct: 537 YMKPLIDTGRVYIAQPPLYKITRKSGKLETVRYAWTDEQLQNYLKEFG-KNFELQRYKGL 595

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GEMN  QLWETT++P+TR+LL+V+I DA++A+   S LMGD+V+PR+ +I EN
Sbjct: 596 GEMNPDQLWETTMDPETRTLLQVQIEDAAKAERRVSALMGDKVDPRKRWIIEN 648


>gi|108763546|ref|YP_630703.1| type II DNA topoisomerase subunit B [Myxococcus xanthus DK 1622]
 gi|108467426|gb|ABF92611.1| type II DNA topoisomerase, B subunit [Myxococcus xanthus DK 1622]
          Length = 643

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 238/597 (39%), Positives = 358/597 (59%), Gaps = 14/597 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +  +Y    IQ+L+GL+ V+KRP+MYIG TD  +G HH+++E+LDN++DE + G+
Sbjct: 1   MA--TKKETYTGADIQVLEGLEPVRKRPAMYIGGTDS-TGYHHLLWEILDNSVDEVINGF 57

Query: 61  ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           A  + VTL+ DG S T+ DNGRGIP D+  +    A EVI+T LHAGGKF Q +Y  SGG
Sbjct: 58  ATTVEVTLHKDGRSVTIVDNGRGIPVDIMPKYKKPAVEVILTTLHAGGKFEQGNYIHSGG 117

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNAL+  L + IK  G  +  +F  G   + L V G A   TGT VTF P  
Sbjct: 118 LHGVGSSVVNALARKLVVEIKLHGKKHVQTFARGKATSTLKVDG-AARGTGTSVTFEPDP 176

Query: 180 DIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     F+ + ++ RL   S+L+  + +   D+ S  P  +T  + GGI  +++ +  
Sbjct: 177 EIFGEKLKFDAELVRERLEAKSYLHKGMTVVWKDETSSPPTSVTYKHDGGIAEYLTKVVT 236

Query: 239 HKKPLM---QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
            +   +    S        + + ++ A+ W +   E++  + N IP   GGTH +GLRSA
Sbjct: 237 ERNKPLVPAGSAAFYHARDNGVRLEAALAWTEATDEHIRSYVNGIPTPLGGTHEAGLRSA 296

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           + + + +Y+E    +     ++  +D REG T++LS  + +P+F  QTK +L + EV   
Sbjct: 297 VVKAVRNYIETHGIAP-KGVTLTAEDIREGITAILSTYVVEPQFQGQTKGRLNNPEVSGQ 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG-VLDIASLPGKL 414
           V+  +   L  WL ++   A+ +V +++ A+  R+A+R A     RK  V    +LPGKL
Sbjct: 356 VDGVLRPALEKWLNDNKSIAESVVARIVLAARAREASRAASQAVSRKTAVSHRLNLPGKL 415

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  DP  SELF+VEGDSAGGSAKQGR R  QAILPLRGK+LN E+A  DK+ +++E+
Sbjct: 416 ADCSSTDPGLSELFIVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTDKVTTNKEL 475

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             +++ALG GIG D FDI+KLRY ++ ++ DAD DG HI TLLLTFF+R +  LI +G +
Sbjct: 476 QDIVSALGCGIGSD-FDISKLRYGRVFLLMDADSDGHHIATLLLTFFYRHLRPLIESGAI 534

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           +I +PPLY +  GK   +  DE   +  +  ++        +     G ++ ++L+ 
Sbjct: 535 HIAQPPLYRVDIGKETYWALDEPDRDRIIKEKTKGNAKPNIMRFKGLGEMTPDELKE 591



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 724 DTIFSIGRKG---ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           D I     KG    ++ R+KGLGEM   +L ETTL+P  R  LRV I    + D L + L
Sbjct: 560 DRIIKEKTKGNAKPNIMRFKGLGEMTPDELKETTLDPKHRMSLRVTIDKPLETDRLINDL 619

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MG +V  R  FI E +     LD+
Sbjct: 620 MGKDVSARFRFIMERASEVQDLDV 643


>gi|39935552|ref|NP_947828.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris CGA009]
 gi|39649405|emb|CAE27927.1| DNA topoisomerase [Rhodopseudomonas palustris CGA009]
          Length = 683

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/598 (39%), Positives = 330/598 (55%), Gaps = 16/598 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+L G+A  I 
Sbjct: 36  AEDGYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIE 94

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L  DG  TVSDNGRGIP D H +    SA EVIM  LHAGGKF+ K Y+ SGGLHGVG
Sbjct: 95  VELTADGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGGLHGVG 154

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALSS L++ + R   ++ M F  G     L   G   N  GT V F P ++IF +
Sbjct: 155 VSVVNALSSRLEVEVARGQQLHRMVFERGHPKGKLESLGKVNNRRGTRVRFKPDTEIFGA 214

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I               P E    + GG++ F+    
Sbjct: 215 KAAFKPQRLFKMARSKAYLFGGVKIRWKCDPELLKGIEDVPAEDEFHFPGGLKDFLGAAI 274

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
            +   +       +  R+  + + + A  W       +  + N +P  DGGTH SGLRSA
Sbjct: 275 HNDTLVHPDIFAGKSGRNGAHGACEWAAAWTADADGFLSSYCNTVPTPDGGTHESGLRSA 334

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E++   K+   S+  +D   G   +LS+ + +P F  QTK++L ++E + +
Sbjct: 335 LLRGLKDHAERAGQGKRA-SSITSEDVMVGAAIMLSVFVREPEFQGQTKDRLATAEAQKI 393

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + D    WL  +P++A  ++  V++        RR      RK  +    LPGKLA
Sbjct: 394 VEQAIKDPFDHWLSGNPVQANKLLDFVIER-AEERLRRRQEKEISRKTAVKKLRLPGKLA 452

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+    + SELF+VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  DK++++ ++ 
Sbjct: 453 DCTSTAAEGSELFIVEGDSAGGSAKQARDRSTQAVLPLRGKILNVASAGKDKVVANAQLS 512

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG   G  ++    LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI  G LY
Sbjct: 513 DLIQALGVSTG-VNYREEDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLY 571

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +  PPLY +T G    Y +D+   E+ L  +  +         KG+     +   + +
Sbjct: 572 LAVPPLYRLTHGAKTVYARDDAHKEELLKKEFNANAKVEVGRFKGL--GEMMPAQLKE 627



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 11/192 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S  +  V   ++L++ +  +   +  ++         ++      V    +    
Sbjct: 494 ILNVASAGKDKVVANAQLSDLIQALGVSTGVNYREEDLRYSRIIIMTDADVDGAHIASLL 553

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLD-TIFSIGRKGISM 736
             F +    K I    +      +  L      +          LL     +  +  + +
Sbjct: 554 ITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKEELLKKEFNANAK--VEV 611

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQE 794
            R+KGLGEM  +QL ETT++P  R++LRV +   D     +   RLMG + E R  FI E
Sbjct: 612 GRFKGLGEMMPAQLKETTMDPAKRTMLRVVLLPDDRDGTANSVERLMGTKAEARFAFISE 671

Query: 795 NSLPSA---LDI 803
            +  ++   LD+
Sbjct: 672 KAEFASDELLDV 683


>gi|110633369|ref|YP_673577.1| DNA topoisomerase IV subunit B [Mesorhizobium sp. BNC1]
 gi|110284353|gb|ABG62412.1| DNA topoisomerase IV subunit B [Chelativorans sp. BNC1]
          Length = 683

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/651 (34%), Positives = 339/651 (52%), Gaps = 21/651 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + SY A  I++L+GL+ V++RP MYIG TD    LHH+  EV+DN++DE++ G+A  I 
Sbjct: 41  ASDSYSAADIEVLEGLEPVRRRPGMYIGGTDD-KALHHLFAEVIDNSMDEAVAGHATFID 99

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L+ DG  TV+DNGRGIP D H +    SA EVIMT LH+GGKF+ K Y+ SGGLHGVG
Sbjct: 100 VELSEDGFLTVTDNGRGIPVDPHPKFKDKSALEVIMTTLHSGGKFDSKVYETSGGLHGVG 159

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALS  L++ + R   ++   F  G    PL   G   N  GT   F P  +IF +
Sbjct: 160 VSVVNALSELLEVEVARGRQLFRQRFSRGKPLGPLESVGEVHNRRGTRTRFKPDPEIFGA 219

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I          ++   P +    + GG++ ++S   
Sbjct: 220 GAKFEPARLYRMTRSKAYLFGGVEIRWNCAPSLLKEKDETPDKAVFHFPGGLKDYLSNSI 279

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             +  + +     +  +   + +++ A+ W  G    +  + N IP  +GGTH  G R+A
Sbjct: 280 DGEFQVTREVFAGKTEKQSGHGAVEWAVTWYGG-DAFLNSYCNTIPTPEGGTHEQGFRNA 338

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  Y + +   +     V  +D       +LS+ + +P F  QTK+KL ++    +
Sbjct: 339 LLRGLRGYADLTGNKRAS--IVTAEDVMISAAGMLSVFVREPEFVGQTKDKLATAAAMRI 396

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA-ARRARDLTRRKGVLDIASLPGKL 414
           VE+ V D    WL ++P EA  ++  V   +   +   RR      RK  +    LPGKL
Sbjct: 397 VENAVRDPFDHWLADNPAEASKLLDWV--IARADERLKRRQEKEVSRKSAVRKLRLPGKL 454

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+      +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A   K+ ++Q+I
Sbjct: 455 ADCTVGAAAGAEIFIVEGDSAGGSAKQARNRATQAVLPLRGKILNVASAGSGKLAANQQI 514

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             LI ALG G  +  +    LRY ++IIMTDADVDGAHI +LL+TFF+++MP LI  G L
Sbjct: 515 TDLIQALGCGT-RSKYREEDLRYERVIIMTDADVDGAHIASLLITFFYQEMPQLITGGHL 573

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           ++  PPLY I++G    Y +D+   ++ L  +            KG+     +   + + 
Sbjct: 574 FLAVPPLYRISQGGKTMYARDDAHKDELLKTEFTGRGKVEIGRFKGL--GEMMPAQLKE- 630

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +D   +           E    +      +  E       + A  +  +
Sbjct: 631 TTMDPKYRTLLRVEVLDTPEATSSAVDALMGTKPEARFRFIQENAEFVEEL 681



 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 4/187 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++ + +  +   +   +       + ++      V    +    
Sbjct: 497 ILNVASAGSGKLAANQQITDLIQALGCGTRSKYREEDLRYERVIIMTDADVDGAHIASLL 556

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F +    + I    +      +  +   G  +         + + +   GR  + + R
Sbjct: 557 ITFFYQEMPQLITGGHLFLAVPPLYRISQGGKTMYARDDAHKDELLKTEFTGRGKVEIGR 616

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA-DDLFSRLMGDEVEPRREFIQENSL 797
           +KGLGEM  +QL ETT++P  R+LLRV++ D  +A       LMG + E R  FIQEN+ 
Sbjct: 617 FKGLGEMMPAQLKETTMDPKYRTLLRVEVLDTPEATSSAVDALMGTKPEARFRFIQENAE 676

Query: 798 PS-ALDI 803
               LDI
Sbjct: 677 FVEELDI 683


>gi|29649150|gb|AAO86864.1| DNA gyrase subunit B [Mesoplasma syrphidae]
          Length = 550

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 247/539 (45%), Positives = 347/539 (64%), Gaps = 5/539 (0%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T   +GLHH+++E+LDN+IDE++ G A+ I+V +  +G   V DNGRGIP  + +
Sbjct: 1   MYIGSTSK-TGLHHLVWEILDNSIDEAMAGEANTISVVITKEGEVIVEDNGRGIPVGIQE 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + G SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + + REGN+Y   
Sbjct: 60  DSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVLVMREGNVYHQI 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQI 208
           F  G      +      +  GT V F P  +IF     F+Y+T+++++++LS+LN  ++I
Sbjct: 120 FSEGGTKQSPLEILETTDKRGTIVRFKPDPEIFQETVTFDYETIRNKVKQLSYLNKGIKI 179

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            L D+R  +  E       GI  +V   +  K  +  S   I G  D+I +++A+++N  
Sbjct: 180 HLTDQRIDKAVEYHF--PNGILDYVKEKNETKTKINPSVYYIDGKHDDIEVEVALQYNAE 237

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y EN++ F NNI   +GG+H  GLR ALTR I  Y EK     K       DD +EG   
Sbjct: 238 YQENLITFVNNINTHEGGSHEDGLRQALTRVINRYSEKVAKGTKSPSKYSWDDIKEGMVC 297

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SI+  DP++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   
Sbjct: 298 IVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDSFEEFLLKSPEDAKSILDKNANAQKA 357

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AA+RAR+ TRRK  LD  SLPGKLADC  +D   +EL+LVEGDSAGGSAK GR+R+ Q
Sbjct: 358 RIAAQRAREETRRKSALDTFSLPGKLADCESKDSTIAELYLVEGDSAGGSAKTGRNRKFQ 417

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK+LNVER    +  ++ EI +++TA+GTGI +D  D++KLRY KI+IMTDADV
Sbjct: 418 AILPLRGKVLNVERVAEARAFANNEIKSIVTAIGTGIKEDL-DLSKLRYGKIVIMTDADV 476

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           DGAHIRTLLLTFF+R M  L+ NG ++I +PPLY I  GK + Y   +  LE+   N+ 
Sbjct: 477 DGAHIRTLLLTFFYRYMKDLVKNGNIFIAQPPLYKIESGKKVAYAYSDAELEELKTNEF 535



 Score = 41.1 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E      +++ + +  I    ++    S      +V      V    +    
Sbjct: 426 VLNVERVAEARAFANNEIKSIVTAIGTGIKEDLDLSKLRYGKIVIMTDADVDGAHIRTLL 485

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    K +  N         L  I +G K+      + L+ +    F+  R   ++
Sbjct: 486 LTFFYRY-MKDLVKNGNIFIAQPPLYKIESGKKVAYAYSDAELEELKTNEFNSSR--YTI 542

Query: 737 QRYKGLGE 744
           QRYKGLGE
Sbjct: 543 QRYKGLGE 550


>gi|168186943|ref|ZP_02621578.1| DNA gyrase subunit B [Clostridium botulinum C str. Eklund]
 gi|169295143|gb|EDS77276.1| DNA gyrase subunit B [Clostridium botulinum C str. Eklund]
          Length = 652

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 221/609 (36%), Positives = 348/609 (57%), Gaps = 23/609 (3%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS       +SYD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   
Sbjct: 1   MSLIQEKNKNSYDVTDLTSLEKLEPVRVRPGMYIGST-GTKGLHHCIWEILDNSIDEIAN 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY + + + LN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKFN K+YK SG
Sbjct: 60  GYGNKVVLILNKDKSVTIMDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNKNYKTSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGN 167
           GLHGVG +VVNALS WL++ + ++G++Y+  F             G    PL + G   +
Sbjct: 120 GLHGVGAAVVNALSEWLEVEVYQKGHVYKQRFEYAEDKSLNKKMPGTPIFPLKIAGDT-D 178

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++TF P  ++FS  +F ++ +  RL+EL+F N  + + + D+R  E  E     + 
Sbjct: 179 KTGTKITFKPDKEVFSTTEFKFEVIDERLQELAFQNKGITLVVKDERKEEVIEKEYHSER 238

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           G+  F+ YL+  K P+ + P+  +G +      +  ++ +++ D   EN+  + NNIP  
Sbjct: 239 GLLDFIDYLNESKIPIHKDPLLYEGEKEVNSIKVYCEVCIQFTDSSTENIASYVNNIPTT 298

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           + GTH +G ++ +TR    + +K    K+  +   GDD REG T++L +K+ +P F  QT
Sbjct: 299 ESGTHETGFKTGMTRIFKEWAKKLNILKEKDKGFEGDDLREGMTAILRVKISNPIFEGQT 358

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL ++E  +V+       +  W+E++   A  I+   + A+  R+  ++  D  ++K 
Sbjct: 359 KTKLGNNEAYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKKV 418

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
               A L GK++ C+ + P+  E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ 
Sbjct: 419 GKGTAPLAGKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQ 478

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R + +L+S+E+     A+GTG+  ++++ + L+Y KIII++DADVDG HIRTL +T+ +R
Sbjct: 479 RLENVLASEELKLFNAAIGTGV-LENYNEDDLKYDKIIILSDADVDGYHIRTLWITYIYR 537

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKG 580
            M SLI NG LYI  PPLY + +      V      ++ L +         +       G
Sbjct: 538 YMRSLITNGHLYIALPPLYKVYKNSKKGEVSKYAYSDEELNSAKKEIGKGALIQRYKGLG 597

Query: 581 VISKNDLRN 589
            ++ + L +
Sbjct: 598 EMNPDQLWD 606



 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 57/88 (64%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
             G+  K       L++      KG  +QRYKGLGEMN  QLW+TTLNP+TR+L ++ I 
Sbjct: 563 KKGEVSKYAYSDEELNSAKKEIGKGALIQRYKGLGEMNPDQLWDTTLNPETRTLQQITIE 622

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS 796
           DA++A+ + S LMGD VEPRR ++ + +
Sbjct: 623 DAAKAEKMISLLMGDVVEPRRNYMYKYA 650


>gi|240139869|ref|YP_002964346.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens AM1]
 gi|240009843|gb|ACS41069.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens AM1]
          Length = 685

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/579 (40%), Positives = 328/579 (56%), Gaps = 13/579 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
               + YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  
Sbjct: 38  ETAEAGYDASAIEVLEGLEPVRRRPGMYIGGTD-ERALHHLFAEVIDNSMDEAVAGHASF 96

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I V L   GS  V+DNGRGIP D H +  G SA EVIMT LHAGGKF+ K Y+ SGGLHG
Sbjct: 97  IEVELEESGSLVVTDNGRGIPVDPHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHG 156

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS  L++ + R   +Y   F  G     L   G   N  GT V F P + IF
Sbjct: 157 VGISVVNALSDVLEVEVARNQTLYRQCFSRGHAQGSLETIGRVQNRRGTRVRFHPDAQIF 216

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYL 236
               F+   L    R  ++L   V+I               P E    + GG+  +++  
Sbjct: 217 GSLKFDPRRLFKMARSKAYLFGGVEIRWRCAPSLLEGLEDVPAEAVHRFPGGLSDYLARD 276

Query: 237 DRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
              K+ ++ S    + ++   + S++ A+ W          + N IP  +GGTH +GLR 
Sbjct: 277 IEGKELVLDSIFSGKITKPGSHGSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHEAGLRV 336

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           AL R +  + E+   +K+   +V  DD      S+LS+ + +P F  QTK+KL + E   
Sbjct: 337 ALLRALREHAERVNQAKRM-TAVTTDDVMATCASMLSVFIREPEFQGQTKDKLATVEASR 395

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE+ + D    WL   P +A  ++  V+D +  R   R+ ++   RK       LPGKL
Sbjct: 396 IVETAIRDAFDHWLAASPAQANKLLDWVIDRAEERLRRRQEKE-VARKSATRKLRLPGKL 454

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS      SE+F+VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  DK+ ++Q I
Sbjct: 455 ADCSAAGTVGSEIFIVEGDSAGGSAKQARDRATQAVLPLRGKILNVASASRDKLGANQLI 514

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  ALG G G + F    LRY ++IIMTDADVDGAHI +LL+TFF+RQMP LI  G L
Sbjct: 515 SDLTLALGCGTGAN-FREADLRYDRVIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHL 573

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           Y+  PPLY I++G    Y +D+   E  +     + ++E
Sbjct: 574 YLAIPPLYRISQGAKSAYARDDADKERIIKTVFKNGKVE 612



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSR 779
           ++ T+F  G+  + + R+KGLGEM  +QL ETT++P  R+LLRV I D       D   R
Sbjct: 601 IIKTVFKNGK--VEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAILDEARESTGDTVER 658

Query: 780 LMGDEVEPRREFIQENSLPS---ALDI 803
           LMG++ E R  FI E +  +    LDI
Sbjct: 659 LMGNKPEARFAFITERASFADGTELDI 685


>gi|218531372|ref|YP_002422188.1| DNA topoisomerase IV subunit B [Methylobacterium chloromethanicum
           CM4]
 gi|254562291|ref|YP_003069386.1| DNA topoisomerase IV subunit B [Methylobacterium extorquens DM4]
 gi|218523675|gb|ACK84260.1| DNA topoisomerase IV, B subunit [Methylobacterium chloromethanicum
           CM4]
 gi|254269569|emb|CAX25539.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens DM4]
          Length = 685

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/579 (40%), Positives = 328/579 (56%), Gaps = 13/579 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
               + YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  
Sbjct: 38  ETAEAGYDASAIEVLEGLEPVRRRPGMYIGGTD-ERALHHLFAEVIDNSMDEAVAGHASF 96

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I V L   GS  V+DNGRGIP D H +  G SA EVIMT LHAGGKF+ K Y+ SGGLHG
Sbjct: 97  IEVELEESGSLVVTDNGRGIPVDPHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHG 156

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS  L++ + R   +Y   F  G     L   G   N  GT V F P + IF
Sbjct: 157 VGISVVNALSDVLEVEVARNQTLYRQCFSRGHAQGSLETIGRVQNRRGTRVRFHPDAQIF 216

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYL 236
               F+   L    R  ++L   V+I               P E    + GG+  +++  
Sbjct: 217 GSLKFDPRRLFKMARSKAYLFGGVEIRWRCAPALLEGLEDVPAEAVHRFPGGLSDYLARD 276

Query: 237 DRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
              K+ ++ S    + ++   + S++ A+ W          + N IP  +GGTH +GLR 
Sbjct: 277 IEGKELVLDSIFSGKITKPGSHGSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHEAGLRV 336

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           AL R +  + E+   +K+   +V  DD      S+LS+ + +P F  QTK+KL + E   
Sbjct: 337 ALLRALREHAERVNQAKRM-TAVTTDDVMATCASMLSVFIREPEFQGQTKDKLATVEASR 395

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE+ + D    WL   P +A  ++  V+D +  R   R+ ++   RK       LPGKL
Sbjct: 396 IVETAIRDAFDHWLAASPAQANKLLDWVIDRAEERLRRRQEKE-VARKSATRKLRLPGKL 454

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS      SE+F+VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  DK+ ++Q I
Sbjct: 455 ADCSAAGTVGSEIFIVEGDSAGGSAKQARDRATQAVLPLRGKILNVASASRDKLGANQLI 514

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  ALG G G + F    LRY ++IIMTDADVDGAHI +LL+TFF+RQMP LI  G L
Sbjct: 515 SDLTLALGCGTGAN-FREADLRYDRVIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHL 573

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           Y+  PPLY I++G    Y +D+   E  +     + ++E
Sbjct: 574 YLAIPPLYRISQGAKSAYARDDADKERIIKTVFKNGKVE 612



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSR 779
           ++ T+F  G+  + + R+KGLGEM  +QL ETT++P  R+LLRV I D       D   R
Sbjct: 601 IIKTVFKNGK--VEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAILDEARESTGDTVER 658

Query: 780 LMGDEVEPRREFIQENSLPS---ALDI 803
           LMG++ E R  FI E +  +    LDI
Sbjct: 659 LMGNKPEARFAFITERASFADGTELDI 685


>gi|284028009|ref|YP_003377940.1| DNA gyrase subunit B [Kribbella flavida DSM 17836]
 gi|283807302|gb|ADB29141.1| DNA gyrase, B subunit [Kribbella flavida DSM 17836]
          Length = 678

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 271/589 (46%), Positives = 370/589 (62%), Gaps = 11/589 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           ++    YDA +IQ+L+GLDAV+KRP MYIG T GE GLHH++YEV+DNA+DE+L GY D 
Sbjct: 29  SVVEKEYDASAIQVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEALAGYCDK 87

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VTL  DG   V DNGRGIP D+ + EG  A  V++T LHAGGKF    YKVSGGLHGV
Sbjct: 88  IVVTLLADGGVRVVDNGRGIPVDIVESEGKPAVTVVLTVLHAGGKFGGGGYKVSGGLHGV 147

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALSS L++ +++ G  Y  SF  G+ D  L   G   +  GT +TF PS D+F 
Sbjct: 148 GVSVVNALSSRLQVDVRKNGKAYTQSFTVGVPDADLAEVG-TSDSNGTTITFWPSPDVFE 206

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR-----EITMFYKGGIEAFVSYLDR 238
              ++Y+TL  R RE +FLN  +++ + D+R          E +  Y  G+  +V YL  
Sbjct: 207 TTTYSYETLSTRFREYAFLNKGLELVIRDERPDHTPEGVPVEQSFKYDDGLVDYVKYLTG 266

Query: 239 HKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            ++ +  + I  +   + D++S+++AM+W+  + E+V  F N I   +GGTH  G R+AL
Sbjct: 267 IRETVHSNVIAFEAAQADDSLSLEVAMQWSGSFQESVHTFANTINTHEGGTHEEGFRAAL 326

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T  + S+ E     KK +  + GDD REG T+++S+K+ +P+F  QTK KL ++EV+  V
Sbjct: 327 TSLVNSFGEDQGMIKKKEDRLTGDDVREGLTAIISVKLGNPQFEGQTKTKLGNTEVKGFV 386

Query: 357 ESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +  VND L AW E++P E + I+ K    AS    A +       RKG+L    LPGKL+
Sbjct: 387 QRVVNDRLGAWFEQNPAEGREIIRKATAAASARIAARKARDLARNRKGLLGGGGLPGKLS 446

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILNVE+AR DK+L + E+ 
Sbjct: 447 DCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILNVEKARIDKVLQNNEVQ 506

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            +I+ALGTGI +D FD  KLRYHKI+IM DADVDG HIRTLLLT  FR M  LI  G +Y
Sbjct: 507 AIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQHIRTLLLTLLFRFMRPLIERGHVY 565

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
             +PPLY I    S   +   E  +D L+        +L  ++     K
Sbjct: 566 AAQPPLYKIRWSNSAHELAYTEREKDGLLAAGFEAGKKLPKENATQRYK 614



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 6/87 (6%)

Query: 722 LLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           LL   F  G+K      + QRYKGLGEMN  +LWETT++P  R LL++ + DA++AD+ F
Sbjct: 593 LLAAGFEAGKKLPKENAT-QRYKGLGEMNPQELWETTMDPANRVLLQITLDDAARADETF 651

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           + LMGD++E RR FIQ N+     LDI
Sbjct: 652 ATLMGDDIEARRNFIQRNAKDVRFLDI 678


>gi|86137425|ref|ZP_01056002.1| DNA topoisomerase IV subunit B [Roseobacter sp. MED193]
 gi|85825760|gb|EAQ45958.1| DNA topoisomerase IV subunit B [Roseobacter sp. MED193]
          Length = 652

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/655 (35%), Positives = 349/655 (53%), Gaps = 22/655 (3%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++++     + +YDA SI++L+GL+ V++RP MYIG TD E  LHHM+ E+LDN++DE+
Sbjct: 1   MANDLLSTPNDETYDASSIEVLEGLEPVRQRPGMYIGGTD-ERALHHMVAEILDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I VTL+ D S T+SDNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGHANRIEVTLHADYSVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  L +++ +   ++E  F  G+   P+   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGSSVVNALSDSLVVQVAKNKELFEQRFSRGLPLGPVEKVGAAPNKRGTFVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--TMFYKGGIEAFV 233
                IF    F    L   +R  ++L S V+I    +   +   +  T  + GG++ ++
Sbjct: 180 HADEQIFGSHRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDKETPVEATFHFPGGLKDYL 239

Query: 234 SYLDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + +                   +   +   ++ A+ W          + N +P  +GGTH
Sbjct: 240 TEVLGKSSVYADVPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  +A+ + I +Y E          S+  DD   G  +++S  + DP F  QTK++L 
Sbjct: 300 VAGFWAAILKGIKAYGELVGNK--KAGSITRDDLMAGGCALVSCFIADPAFVGQTKDRLS 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +     +VE+ V D    WL      A  I+  ++  +  R   ++ ++ T+RK      
Sbjct: 358 TESAAKMVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKE-TQRKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +D   +ELF+VEGDSAGGS K  R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 417 RLPGKLTDCTSKDRAGTELFIVEGDSAGGSGKGARNRNNQALLPLKGKILNVLGAASNKI 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++ EI  L  ALG G G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 477 GTNAEIRDLCEALGVGTG-TKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G    Y  DE   + ++      +           G +   D
Sbjct: 536 IDGGHLYLACPPLFRLTQGAKRVYCLDEAERDKWMEKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFIDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+    D      I   I +  P      +E+ +           + N     +L
Sbjct: 596 LKETTMDPNTRKLIRVTIDEDEPGETGDLVERLMGKKPELRYQYIQENAKFVEEL 650



 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 5/188 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N        +   +++ +    +   +   ++      D ++      V    +    
Sbjct: 465 ILNVLGAASNKIGTNAEIRDLCEALGVGTGTKFNLDDLRYDKIIIMTDADVDGAHIASLL 524

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKG-ISMQR 738
             F F      I    +      +  L     ++           +   +G KG I + R
Sbjct: 525 MTFFFTQMRPLIDGGHLYLACPPLFRLTQGAKRVYCLDEAERDKWMEKGLGGKGKIDVSR 584

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM+A  L ETT++P+TR L+RV I +    +  DL  RLMG + E R ++IQEN+
Sbjct: 585 FKGLGEMDAKDLKETTMDPNTRKLIRVTIDEDEPGETGDLVERLMGKKPELRYQYIQENA 644

Query: 797 LPS-ALDI 803
                LD+
Sbjct: 645 KFVEELDV 652


>gi|18147181|dbj|BAB83071.1| DNA gyrase subunit B [Alcanivorax sp. ST-1]
 gi|324039414|dbj|BAJ78460.1| DNA gyrase subunit B [Alcanivorax sp. ST1]
          Length = 466

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 286/469 (60%), Positives = 365/469 (77%), Gaps = 4/469 (0%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DN+IDE+L G+   I V ++ D S ++ DNGRGIPT++H+EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNSIDEALAGFCSEIKVVIHPDESMSIQDNGRGIPTEMHEEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL V G   + +GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+R
Sbjct: 121 PAKPLEVVG-TTDSSGTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDER 179

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENV 273
           S +       Y+GG+ AFVSYL+ +K PL Q      +   D I++++AM+WND Y EN+
Sbjct: 180 SGDE--DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL+G R+ALTR + SY++K    KK+K S  GDD REG T+V+S+K
Sbjct: 238 FCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVK 297

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR
Sbjct: 298 VPDPKFSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAAR 357

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++TRRKG LDIA LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL
Sbjct: 358 KAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPL 417

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +GKILNVE+ARFDKMLSSQE+GTLITALG GIG+D ++I KLRYH+III
Sbjct: 418 KGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIII 466


>gi|170742474|ref|YP_001771129.1| DNA topoisomerase IV subunit B [Methylobacterium sp. 4-46]
 gi|168196748|gb|ACA18695.1| DNA topoisomerase IV, B subunit [Methylobacterium sp. 4-46]
          Length = 682

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/577 (40%), Positives = 327/577 (56%), Gaps = 13/577 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             + YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  I 
Sbjct: 37  AEAGYDASAIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHATFIE 95

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L   G  +V+DNGRGIP D H +  G SA EVIMT LHAGGKF+ K Y+ SGGLHGVG
Sbjct: 96  VELEEGGILSVTDNGRGIPVDPHPKFPGRSALEVIMTTLHAGGKFDSKVYETSGGLHGVG 155

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ + R   +Y   F  G+    L   G   N  GT+V F P   IF  
Sbjct: 156 VSVVNALSDRLEVEVARNQTLYRQHFSRGVPQGGLEQVGRVQNRRGTKVRFHPDPQIFGA 215

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDR 238
             F+   L    R  ++L   V+I               P E    +  G+  +++    
Sbjct: 216 LAFDPRRLFKMARSKAYLFGGVEIRWRCAPALVEGIEGVPAEAVHRFPAGLRDYLAQEID 275

Query: 239 HKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            K+ +  +    + +R   + S++ A+ W          + N +P  +GGTH SGLR AL
Sbjct: 276 GKELVTDALFTGKVTRPGSHGSLEWAVAWLTHDDGFSSSYCNTVPTPEGGTHESGLRIAL 335

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            R +  + E+    K+ +     DD      S+LS+ + +P F  QTK+KL + E   +V
Sbjct: 336 LRALRDHAERVGQVKRVQAVTT-DDVMATCASMLSVFIREPEFQGQTKDKLATLEASRIV 394

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V D    WL   P +A  ++  V+D +  R   R+ ++   RK       LPGKLAD
Sbjct: 395 EAAVRDAFDHWLAASPTQANKLLDWVIDRAEERLRRRQEKE-VARKTATRKLRLPGKLAD 453

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS+     SE+F+VEGDSAGGSAKQ R R +QA+LPLRGKILNV  A  DK+ ++Q +  
Sbjct: 454 CSKAGAAGSEIFIVEGDSAGGSAKQARDRASQAVLPLRGKILNVASASRDKLGANQLLSD 513

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L  ALG G G   +  + LRY K+IIMTDADVDGAHI +LL+TFF+RQMP LI  G LY+
Sbjct: 514 LTQALGCGTG-SHYRDDDLRYEKVIIMTDADVDGAHIASLLITFFYRQMPKLIEKGHLYL 572

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
             PPLY +++G    Y +D+   E  +     + ++E
Sbjct: 573 AVPPLYRLSQGAKTAYARDDRHKEQLIKTVFKNGKVE 609



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 11/99 (11%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI-T 768
             D+ K      L+ T+F  G+  + + R+KGLGEM   QL ETT++P  R+LLRV++  
Sbjct: 590 RDDRHK----EQLIKTVFKNGK--VEIGRFKGLGEMMPGQLKETTMDPSKRTLLRVEVLD 643

Query: 769 DASQA-DDLFSRLMGDEVEPRREFIQENSL---PSALDI 803
           +A +A  D   RLMG++ E R  FI E ++    + LDI
Sbjct: 644 EAREATGDAVERLMGNKPEARFAFISERAVFADEAELDI 682


>gi|163852535|ref|YP_001640578.1| DNA topoisomerase IV subunit B [Methylobacterium extorquens PA1]
 gi|163664140|gb|ABY31507.1| DNA topoisomerase IV, B subunit [Methylobacterium extorquens PA1]
          Length = 701

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/579 (40%), Positives = 329/579 (56%), Gaps = 13/579 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
               + YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  
Sbjct: 54  ETAEAGYDASAIEVLEGLEPVRRRPGMYIGGTD-ERALHHLFAEVIDNSMDEAVAGHASF 112

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I V L   GS  V+DNGRGIP D H +  G SA EVIMT LHAGGKF+ K Y+ SGGLHG
Sbjct: 113 IEVELEESGSLVVTDNGRGIPVDPHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHG 172

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS  L++ + R   +Y   F  G     L   G   N  GT V F P + IF
Sbjct: 173 VGISVVNALSDVLEVEVARNQTLYRQCFSRGHAQGSLETIGRVQNRRGTRVRFHPDAQIF 232

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYL 236
               F+   L    R  ++L   V+I            +  P E    + GG+  +++  
Sbjct: 233 GSLKFDPRRLFKMARSKAYLFGGVEIRWRCAPALLEGLADVPAEAVHRFPGGLSDYLARD 292

Query: 237 DRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
              K+ ++ S    + ++   + S++ A+ W          + N IP  +GGTH +GLR 
Sbjct: 293 IEGKELVLDSIFSGKITKPGSHGSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHEAGLRV 352

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           AL R +  + E+   +K+   +V  DD      S+LS+ + +P F  QTK+KL + E   
Sbjct: 353 ALLRALREHAERVNQAKRM-TAVTTDDVMATCASMLSVFIREPEFQGQTKDKLATVEASR 411

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE+ + D    WL   P +A  ++  V+D +  R   R+ ++   RK       LPGKL
Sbjct: 412 IVETAIRDAFDHWLAASPAQANKLLDWVIDRAEERLRRRQEKE-VARKSATRKLRLPGKL 470

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS      SE+F+VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  DK+ ++Q I
Sbjct: 471 ADCSAAGTVGSEIFIVEGDSAGGSAKQARDRATQAVLPLRGKILNVASASRDKLGANQLI 530

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  ALG G G + F    LRY ++IIMTDADVDGAHI +LL+TFF+RQMP LI  G L
Sbjct: 531 SDLTLALGCGTGAN-FREADLRYDRVIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHL 589

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           Y+  PPLY I++G    Y +D+   E  +     + ++E
Sbjct: 590 YLAIPPLYRISQGAKSAYARDDADKERIIKTVFKNGKVE 628



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSR 779
           ++ T+F  G+  + + R+KGLGEM  +QL ETT++P  R+LLRV I D       D   R
Sbjct: 617 IIKTVFKNGK--VEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAILDEARESTGDTVER 674

Query: 780 LMGDEVEPRREFIQENSLPS---ALDI 803
           LMG++ E R  FI E +  +    LDI
Sbjct: 675 LMGNKPEARFAFITERASFADGTELDI 701


>gi|306845925|ref|ZP_07478492.1| DNA topoisomerase IV, B subunit [Brucella sp. BO1]
 gi|306273560|gb|EFM55405.1| DNA topoisomerase IV, B subunit [Brucella sp. BO1]
          Length = 680

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/564 (41%), Positives = 336/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 39  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 97

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 98  VDKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 157

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 158 VVNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNA 217

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 218 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 277

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 278 EHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 336

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 337 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVE 394

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 395 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 453

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 454 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 513

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 514 VQALGCGT-RKNYREDNLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 572

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 573 VPPLYRLSQGGKTAYARDDAHKEE 596



 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 493 ILNVASAGREKLTANQQIADLVQALGCGTRKNYREDNLRYDRVIVMTDADVDGAHIASLL 552

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L   G             LL T+F+ GR  I + 
Sbjct: 553 ITFFYQEMPELIRNGHLYLAVPPLYRLSQGGKTAYARDDAHKEELLRTVFT-GRGKIEIG 611

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 612 RFKGLGEMRADQLKETTMDPAKRTLLRVQVDEEYGDETRNTVDDLMGTKPEARFRFIQDR 671

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 672 AAFVEELDI 680


>gi|168699793|ref|ZP_02732070.1| DNA gyrase subunit B [Gemmata obscuriglobus UQM 2246]
          Length = 650

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/581 (41%), Positives = 348/581 (59%), Gaps = 12/581 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y  + IQ+L+GL+ V+KRP+MYIG  D   GLHH+ +E+LDNA+DE + GYAD ITV
Sbjct: 9   TAAYRTEDIQVLEGLEPVRKRPAMYIGGVDA-KGLHHLAWEILDNAVDEYINGYADHITV 67

Query: 67  TLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGV 123
           TL+  G   T+ DNGRGIP D+H +   +  E+++T LHAGGKF +    Y  SGGLHGV
Sbjct: 68  TLHKSGQAITIFDNGRGIPVDMHPKHKKTGLELVLTVLHAGGKFGESESGYIHSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS  L   ++R+G  Y   +  G     +   G      GT + F P   IF 
Sbjct: 128 GASVVNALSKRLVATVRRDGFEYRQEYAKGTPLAKIEKVGP-FRGHGTGIYFEPDDTIFK 186

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+ DTL+ RL + SF++S ++I+  ++ + E     +   GG+ AF+  L    +  
Sbjct: 187 TVRFDPDTLRARLEDTSFVHSGLRITFKNEVTGETL--ELANPGGLPAFLGRLVLDGQKP 244

Query: 244 MQSPIRIQGSRDNI-SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
             +       R+    I++A++W +   E    + N I    GGTH +GL+SAL + + S
Sbjct: 245 PVTEASFSAVRETGDKIEVALQWTESTEETYRSYANGIRTPQGGTHENGLKSALRKAVQS 304

Query: 303 YVEKSFG--SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y++       +     +  DD REG  +VLS+ + DP F SQTK++L ++E+   V++FV
Sbjct: 305 YIDTHDDVKKQSKGLKITADDIREGIVAVLSVFLRDPMFQSQTKDRLTNTEMEGSVDNFV 364

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV-LDIASLPGKLADCSE 419
              L AWL  +   A  IV +++ A+ +R+A+R A++  +RK       SLPGKLADC  
Sbjct: 365 RPALEAWLNNNKTAADSIVGRIVIAARMREASRAAKEEVKRKAPGSKRLSLPGKLADCKS 424

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            D  ++ELF+VEGDSAGGSAKQGR+   QA+LPLRGKILN E     K L++QEI  L+T
Sbjct: 425 TDRDETELFIVEGDSAGGSAKQGRNNSTQAVLPLRGKILNCEGLPASKALTNQEIADLVT 484

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+GTGIG D F+   LRY KII++ DAD DG HI TL+L F FR MP LI +G +YI +P
Sbjct: 485 AIGTGIG-DKFNYGGLRYGKIILLMDADADGCHITTLMLAFLFRHMPDLIRHGHVYIGRP 543

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           PLY +  GK + +V+D++  E+ +   + +         KG
Sbjct: 544 PLYRVNVGKDIHWVQDDQGKEELVEKLTKANRKFEVTRFKG 584



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS-QADDL 776
           G   L++ +    RK   + R+KGLGEM+A  L  TTL+  TR+LL+V    A+ + D  
Sbjct: 562 GKEELVEKLTKANRK-FEVTRFKGLGEMDAKDLAATTLDRRTRTLLKVSTDGAALETDRT 620

Query: 777 FSRLMGDEVEPRREFIQ---ENSLPSALDI 803
           F+ L+G + +PR +FI    + ++   LD+
Sbjct: 621 FADLLGKDAKPRYDFIMAKADQAVDEDLDV 650


>gi|315940111|gb|ADU56234.1| DNA gyrase subunit B [Nocardia jinanensis]
          Length = 576

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 254/578 (43%), Positives = 355/578 (61%), Gaps = 33/578 (5%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T GE GLHH+I+EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP  +H 
Sbjct: 1   MYIGST-GERGLHHLIWEVVDNSVDEAMAGHATKVEVTLLADGGVQVVDDGRGIPVAMHA 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + GI   EV+MT+LHAGGKF+  SY VSGGLHGVG+SVVNALSS L+  I+ +G  +  +
Sbjct: 60  Q-GIPTIEVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSSRLEAEIEVDGYHWSQT 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + + +    L V G     TGT + F   S +F    +N++T+  RL+E++FLN  + I 
Sbjct: 119 YKDAVP-GQL-VQGEPTKATGTTIRFWADSAVFETTTYNFETVSRRLQEMAFLNKGLTIV 176

Query: 210 LIDKRSPEPREIT----------------------------MFYKGGIEAFVSYLDRHKK 241
           L D+R  E                                   Y GG+E FV +++R K+
Sbjct: 177 LTDERVSETEITDEVVSDTAEAPKHDDGEKPAVEQKVKTRTYHYPGGLEDFVRHINRTKQ 236

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+  S +   G      +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  + 
Sbjct: 237 PIHNSVVSFNGKGPGHELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVN 296

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y ++    K+   ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N
Sbjct: 297 RYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACN 356

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ W E +P +AK IV K + ++  R AAR+AR+L RRK   DI  LPGKLADC  +D
Sbjct: 357 EHLAHWFEANPADAKTIVNKAVSSAQARVAARKARELVRRKSATDIGGLPGKLADCRSKD 416

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA 
Sbjct: 417 PSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAF 476

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGI  D FDI KLRYHKI++M DADVDG HI TLLLT  FR M  LI +G +++ +PPL
Sbjct: 477 GTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIEHGHVFLAQPPL 535

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           Y +   +        +   D L+   L+   ++  D  
Sbjct: 536 YKLKWHRVDPEFAYSDRERDGLLEAGLAAGKKINKDDG 573


>gi|260426009|ref|ZP_05779988.1| DNA topoisomerase IV, B subunit [Citreicella sp. SE45]
 gi|260420501|gb|EEX13752.1| DNA topoisomerase IV, B subunit [Citreicella sp. SE45]
          Length = 652

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/654 (37%), Positives = 345/654 (52%), Gaps = 23/654 (3%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D+     + ++YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE+
Sbjct: 1   MADDLLAATETTTYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I V L+ D + T+ DNGRGIP D H +  G SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGHANRIEVELHEDYALTIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGKAYE 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ R   ++E  F  GI    +   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGASVVNALSDSMVVQVARNKELFEQRFSRGIPLGGVEKIGAAPNRRGTTVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
                IF    F    L   +R  ++L S V+I      +    P E T  + GG+  ++
Sbjct: 180 HADEQIFGHHRFKPARLFKMVRSKAYLFSGVEIRWKSAIEDGETPTEATFHFPGGLADYL 239

Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           S            P        +  +    ++ A+ W       +  + N +P  +GGTH
Sbjct: 240 SETMNGSSTYADKPFAGTVDFKEKFQTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G  SA+ + I +Y E      +    +  DD   G  +++S  + +P F  QTK++L 
Sbjct: 300 EAGFWSAILKGIRAYGELVN--NRKASQITRDDLITGGCALVSCFIREPEFVGQTKDRLA 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E + +VE  V D    WL      A  I+  ++         RR    T RK      
Sbjct: 358 TTEAQRLVEGAVRDHFDNWLASDTKSAGAILDFLVLR-AEERLRRRQEKETARKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +  + +ELF+VEGDSAGGSAK  R RE QA+LPL+GKILNV  A  +K+
Sbjct: 417 RLPGKLTDCTAKSREGTELFIVEGDSAGGSAKGARFRETQALLPLKGKILNVLGAASNKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+ EI  L  ALG G+G   F ++ LRY KIIIMTDADVDGAHI +LL+TFF+ QM  L
Sbjct: 477 TSNAEIRDLCEALGVGLG-TKFSLDDLRYEKIIIMTDADVDGAHIASLLMTFFYTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPLY +T+G    YV D+   E+ L      +           G +   D
Sbjct: 536 IDQGHLYLACPPLYRLTQGARRIYVADDAEKEEMLKKGLGGKGKIDVQRFKGLGEMDAKD 595

Query: 587 LRNFIDD---ALKIDKLIKDFYPNHDKTFIEQAV-ISGVFNCESDQEINVSLAS 636
           L+    D      I   I +  P      +E+ +        +  QE    +A 
Sbjct: 596 LKETTMDPATRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENARFVAE 649



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREF 791
           I +QR+KGLGEM+A  L ETT++P TR L+RV I +    +  DL  RLMG + E R ++
Sbjct: 580 IDVQRFKGLGEMDAKDLKETTMDPATRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQY 639

Query: 792 IQENSLPSA-LDI 803
           IQEN+   A LD+
Sbjct: 640 IQENARFVAELDV 652


>gi|188582557|ref|YP_001926002.1| DNA topoisomerase IV subunit B [Methylobacterium populi BJ001]
 gi|179346055|gb|ACB81467.1| DNA topoisomerase IV, B subunit [Methylobacterium populi BJ001]
          Length = 647

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 239/578 (41%), Positives = 331/578 (57%), Gaps = 13/578 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  I
Sbjct: 1   MAEAGYDASAIEVLEGLEPVRRRPGMYIGGTD-ERALHHLFAEVIDNSMDEAVAGHASFI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
            V L   G+  V+DNGRGIP D H +  G SA EVIMT LHAGGKF+ K Y+ SGGLHGV
Sbjct: 60  EVELEETGALVVTDNGRGIPVDPHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS  L++ + R   +Y  +F  G    PL   G   N  GT V F P + IF 
Sbjct: 120 GISVVNALSDVLEVEVARNQTLYRQTFSRGHAQGPLETLGRVQNRRGTRVRFHPDAQIFG 179

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F+   L    R  ++L   V+I               P E    + GG+  +++   
Sbjct: 180 SLKFDPRRLFKMARSKAYLFGGVEIRWRCAPALLEGLEDVPAEAVHRFPGGLSDYLARDI 239

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             K+ ++ +    + ++   + S++ A+ W          + N IP  +GGTH SGLR A
Sbjct: 240 EGKELVLDAIFSGKVTKPGSHGSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHESGLRVA 299

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E+   +K+   SV  DD      S+LS+ + +P F  QTK+KL + E   +
Sbjct: 300 LLRALREHAERVNQAKRM-TSVTTDDVLATCASMLSVFIREPEFQGQTKDKLATVEASRI 358

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ V D    WL   P +A  ++  V+D +  R   R+ ++   RK       LPGKLA
Sbjct: 359 VETAVRDAFDHWLAASPAQANKLLDWVIDRAEERLRRRQEKE-VARKSATRKLRLPGKLA 417

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS      SE+F+VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  DK+ ++Q I 
Sbjct: 418 DCSAAGTAGSEIFIVEGDSAGGSAKQARDRATQAVLPLRGKILNVASASRDKLGANQLIS 477

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L  ALG G G + F    LRY ++IIMTDADVDGAHI +LL+TFF+RQMP LI  G LY
Sbjct: 478 DLTLALGCGTGAN-FREGDLRYDRVIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHLY 536

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           +  PPLY I++G    Y +D+   E  +     + ++E
Sbjct: 537 LAIPPLYRISQGAKSAYARDDADKERIIKTVFKNGKVE 574



 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSR 779
           ++ T+F  G+  + + R+KGLGEM  +QL ETT++P  R+LLRV + D       D   R
Sbjct: 563 IIKTVFKNGK--VEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAVLDEARESTGDTVER 620

Query: 780 LMGDEVEPRREFIQENSLPS---ALDI 803
           LMG++ E R  FI E +  +    LDI
Sbjct: 621 LMGNKPEARFAFITERAAFADGTELDI 647


>gi|306841761|ref|ZP_07474447.1| DNA topoisomerase IV, B subunit [Brucella sp. BO2]
 gi|306288166|gb|EFM59553.1| DNA topoisomerase IV, B subunit [Brucella sp. BO2]
          Length = 680

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/564 (41%), Positives = 336/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 39  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 97

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 98  VDKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 157

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 158 VVNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNA 217

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 218 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 277

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 278 EHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 336

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 337 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVE 394

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 395 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 453

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 454 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 513

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 514 VQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 572

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 573 VPPLYRLSQGGKTAYARDDAHKEE 596



 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 493 ILNVASAGREKLTANQQIADLVQALGCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 552

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L   G             LL T+F+ GR  I + 
Sbjct: 553 ITFFYQEMPELIRNGHLYLAVPPLYRLSQGGKTAYARDDAHKEELLRTVFT-GRGKIEIG 611

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 612 RFKGLGEMRADQLKETTMDPAKRTLLRVQVDEEYGDETRNTVDDLMGTKPEARFRFIQDR 671

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 672 AAFVEELDI 680


>gi|221061813|ref|XP_002262476.1| DNA gyrase subunit b [Plasmodium knowlesi strain H]
 gi|193811626|emb|CAQ42354.1| DNA gyrase subunit b, putative [Plasmodium knowlesi strain H]
          Length = 992

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 278/938 (29%), Positives = 430/938 (45%), Gaps = 209/938 (22%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             YDA  I IL+GL+AV+KRP MYIG+TD   GLH +++E++DN++DE      + I + 
Sbjct: 109 KDYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNEIKIV 167

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---------------------- 105
           ++ D S T+ DNGRGIP D+H++   SA E ++T LH+                      
Sbjct: 168 IHEDESVTIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFVDEDTAADLVERTSVGGM 227

Query: 106 ---------GGKFNQKS-----------------------------YKVSGGLHGVGVSV 127
                    GGK  QKS                             Y+ S GLHGVG+SV
Sbjct: 228 SSEIGEDERGGKGEQKSKAKVVEKLDEKNSKKKNPKEASQKSASQMYRFSSGLHGVGLSV 287

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186
            NALSS++K+++ R G I+ +    G +  PL V     +  GT++ + P  DIF     
Sbjct: 288 ANALSSFMKVKVFRGGKIHSIELEKGKVVTPLSVRECPVSKRGTQIHYKPDHDIFKNTIR 347

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----------------------------- 217
            N + +++R+ +L++LN  +     D+RS +                             
Sbjct: 348 HNAELIKNRIHQLAYLNDRLTFYFYDERSAKKVPTSVHLAKGNEADEVDKREDKTTDAVN 407

Query: 218 ----------PREITMFYKGGIEAFVSYLDRHKKPLMQSPI---RIQGSRDNISIDLAMR 264
                          + ++GG+  ++  L ++K  L +       I   + N+ IDL ++
Sbjct: 408 TTVEHNNLDFYPYEVIKHEGGLNEYMESLTKNKASLFKDSNKIISISCHQKNVHIDLRIK 467

Query: 265 WNDG-YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           W  G YHE+++ F NN+   DGGTH+  ++ A++R +   ++K+  + K+  ++ G+  R
Sbjct: 468 WTQGQYHEHIVSFVNNVNTTDGGTHVDAMKYAISRCVNFNIKKN-EATKNFVNIPGEYIR 526

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LSIKM +P F  QTK KL S  ++ ++ES + + LS   +  P     I  K L
Sbjct: 527 EGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFEKLSEIFDFEPNLLNTIYLKAL 586

Query: 384 DASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
            A    + A+ ARDL R K     +++ PGKL DC   D  ++E+F+VEGDSA GSAKQ 
Sbjct: 587 QAKASDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDINRNEIFIVEGDSAAGSAKQA 646

Query: 443 RSRENQAILPLRGKILNVERARFDKM-LSSQEIGTLITALGTGIGQDSFDINK------- 494
           R+RE QAILPL+GKILNVE+ + +K    + E+ +LITA+G  I  D+  + K       
Sbjct: 647 RNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITAIGLSISCDNSKMAKGKNMLNN 706

Query: 495 -------------------------------------LRYHKIIIMTDADVDGAHIRTLL 517
                                                LRY KIIIMTDADVDG HIR LL
Sbjct: 707 KKKDIKKKYDLKCSKKENVQVNNAMVNKKKNTLFDTPLRYGKIIIMTDADVDGEHIRILL 766

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           LTF +R   ++I NG +++  PPLY +T  +       E  ++ + ++   S+ +     
Sbjct: 767 LTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDNTIKETVMKQFNVSTRNSKTLIHTYS 826

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
              +             + +  L KD   + ++  +E              E ++S  + 
Sbjct: 827 DDEL------------NVLLGLLEKDRSSHAEQRSVELGKGGLARRGNIPSEDHLSSLTS 874

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L N         E +    +N  D      A        L G++ F+F  +Y        
Sbjct: 875 LDNLNFRYNSADEVTEKERLNTDDRNAAHTANTAISTAPLSGNAFFTFSKRY-------- 926

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNP 757
                                                 +QR+KGLGEM A QLW TT++P
Sbjct: 927 -------------------------------------EIQRFKGLGEMMADQLWSTTMDP 949

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
             R L+RV + DA +A++L   LMG++ + R+ FI EN
Sbjct: 950 SVRKLIRVTVNDAMRANNLIFSLMGEDSKLRKSFILEN 987


>gi|19909537|dbj|BAB86964.1| DNA gyrase subunit B [Caulobacter vibrioides]
          Length = 478

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 306/478 (64%), Positives = 372/478 (77%), Gaps = 10/478 (2%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  SGLHHM+YEV+DNAIDE+L G+A  + V LN DGS TV+D+GRGIP D+H+ EG+S
Sbjct: 1   TDDGSGLHHMVYEVVDNAIDEALAGHATKVQVILNADGSVTVTDDGRGIPVDMHEGEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+L I R G +++M F  G 
Sbjct: 61  AAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGD 120

Query: 155 LDNPLVVTGSAGND----------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
               L VTG +             TGTEVTF PS + F+  +F+  TL+HRLREL+FLNS
Sbjct: 121 AVTSLKVTGDSPVRTEGPKAGETLTGTEVTFFPSKETFAFIEFDRKTLEHRLRELAFLNS 180

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            V I   D R  EP E  + Y GGIEAFV +LD+ K PL+++PI ++G +D + +DLA+ 
Sbjct: 181 GVTIWFKDHRDAEPWEEKLHYDGGIEAFVRHLDKVKTPLLKAPISVRGVKDKVEVDLALW 240

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WND YHE +LCFTNNIPQ+DGGTHLS  R+ALTR IT Y E S   KK+K S+ G+D RE
Sbjct: 241 WNDSYHEQMLCFTNNIPQRDGGTHLSAFRAALTRIITGYAESSGILKKEKVSLGGEDARE 300

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  V +GL+ W EEHP EA+ IV K+ +
Sbjct: 301 GLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVQEGLATWFEEHPNEARAIVSKIAE 360

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R+AAR+AR+LTRRK  LDI SLPGKLADCSERDP KSE+F+VEGDSAGGSAKQ R+
Sbjct: 361 AAAAREAARKARELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARN 420

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+NQA+LPLRGKILNVERARFDKMLSS +IGTLITALG GIG+D F+ +K+RYHKI++
Sbjct: 421 RDNQAVLPLRGKILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVL 478


>gi|163760282|ref|ZP_02167365.1| DNA topoisomerase IV subunit B [Hoeflea phototrophica DFL-43]
 gi|162282681|gb|EDQ32969.1| DNA topoisomerase IV subunit B [Hoeflea phototrophica DFL-43]
          Length = 697

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/595 (39%), Positives = 346/595 (58%), Gaps = 17/595 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I V 
Sbjct: 57  DAYDASAIEVLEGLEPVRRRPGMYIGGTD-ERALHHLFAEVIDNSMDEAVAGHANFIEVE 115

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ +G  TVSDNGRGIP + H +  G S  EVIMT LHAGGKF+ K Y+ SGGLHGVGVS
Sbjct: 116 LDAEGYLTVSDNGRGIPVENHPKFPGKSTLEVIMTVLHAGGKFDSKVYETSGGLHGVGVS 175

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L + I R   +Y   F  GI    L   G   N  GT++ F P +DIF +  
Sbjct: 176 VVNALSDDLLVEIARNRCLYRQRFSRGIPQGGLEEAGEVHNRRGTKIRFHPDADIFGAAA 235

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   L    R  ++L   V+I         + +  P +    + GG++ ++      +
Sbjct: 236 RFDPGRLYRMARSKAYLFGGVEIRWSCDPSLVEGTETPDKAVFHFPGGLKDYLEASLGKE 295

Query: 241 KPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             + +     +  R   + S++ A+ W  G    +  + N IP  +GGTH +GLR ALT+
Sbjct: 296 HRVTREIFAGKTERPGGHGSMEWAVTWYGG-DAAISSYCNTIPTPEGGTHEAGLRIALTK 354

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y E +   +    ++  DD       +LS+ + +P F  QTK+KL + E + +VE+
Sbjct: 355 GLKAYAELTGNKRAS--AITTDDVMISSIGMLSVFIREPEFVGQTKDKLATVEAQRIVEN 412

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D    +L + P EA  +++ V+D +  R   R+ ++   RK  +    LPGKLADCS
Sbjct: 413 ALRDPFDHFLADSPAEADKLLEWVIDRAEERVRRRKEKE-VNRKTAVRKLRLPGKLADCS 471

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           +   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+IG L+
Sbjct: 472 QTTSEGAELFIVEGDSAGGSAKQARNRSNQAILPLRGKILNVASAGREKLGANQQIGDLV 531

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG G  +  +    LRY +IIIMTDADVDGAHI +LL+TFF+++MP LI  G LY+  
Sbjct: 532 QALGCGT-RSKYREEDLRYDRIIIMTDADVDGAHIASLLITFFYQEMPELIRQGHLYLAV 590

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           PPLY I++G    Y +D+    + L  +            KG+     L   + +
Sbjct: 591 PPLYKISQGGKSLYARDDAHRVELLETEFTGRGKVEINRFKGL--GEMLPAQLKE 643



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 115/331 (34%), Gaps = 33/331 (9%)

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEE 557
           I TD DV    I ++ +   F + P  +      +       I     R     ++ D  
Sbjct: 371 ITTD-DVM---ISSIGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDHFLADSP 426

Query: 558 SLEDYLINQSLSEEIELF-------CDSKGVISKNDLRNFIDDALK----------IDKL 600
           +  D L+   +    E          + K  + K  L   + D  +          ++  
Sbjct: 427 AEADKLLEWVIDRAEERVRRRKEKEVNRKTAVRKLRLPGKLADCSQTTSEGAELFIVEGD 486

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     + N  S     +    ++ + +  +   +   +    
Sbjct: 487 SAGGSAKQARNRSNQAILPLRGKILNVASAGREKLGANQQIGDLVQALGCGTRSKYREED 546

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
              D ++      V    +      F +    + I    +      +  +   G  +   
Sbjct: 547 LRYDRIIIMTDADVDGAHIASLLITFFYQEMPELIRQGHLYLAVPPLYKISQGGKSLYAR 606

Query: 718 GPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQA 773
                ++ + +   GR  + + R+KGLGEM  +QL ETT++P  R+LL+V +   D    
Sbjct: 607 DDAHRVELLETEFTGRGKVEINRFKGLGEMLPAQLKETTMDPAKRTLLKVAVDITDPEST 666

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +    LMG + + R  FIQE++  +  LDI
Sbjct: 667 REAVDNLMGTKADARFRFIQEHAAFADNLDI 697


>gi|291558319|emb|CBL35436.1| DNA gyrase subunit B [Eubacterium siraeum V10Sc8a]
          Length = 686

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 275/609 (45%), Positives = 379/609 (62%), Gaps = 26/609 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +     +Y AD IQIL+GL+AV+KRP MYIG T GESGLHH++YE++DNAIDE+L GY  
Sbjct: 30  NTQVEHAYGADDIQILEGLEAVRKRPGMYIGST-GESGLHHLVYEIVDNAIDEALAGYCT 88

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +       V+DNGRGIPT +H +E ISAA V+ T LHAGGKF    YKVSGGLHG
Sbjct: 89  EINVKILPGDVIEVTDNGRGIPTGIHPKEKISAATVVYTILHAGGKFGGGGYKVSGGLHG 148

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALS WL+L +     I+   F N G     + V G   + TGT+V F P S I
Sbjct: 149 VGASVVNALSEWLELTVYDGKEIHFQRFENGGHYKEQMKVIG-TTDKTGTQVRFKPDSTI 207

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSY--LDR 238
           F   +F YD L  RLRE +FLN+ ++I L D +   +P++  + Y+GGI ++V +    R
Sbjct: 208 FHSTEFKYDILLDRLREQAFLNAGLKIVLSDLRDEDKPKQEVLQYEGGIISYVEWLQKKR 267

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALT 297
             + L    + I+G  DNIS+++A ++N  ++ E    F NNI   DGGTH    ++AL 
Sbjct: 268 GAEALHPDVVYIEGLLDNISVEIAFQYNTDFNSETFRSFANNIHTVDGGTHEIAFKNALN 327

Query: 298 RQITSYVEKSFGSK--------------KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           + I  +V++    +              K+   + G+  RE   +V+S+K+P+  F  QT
Sbjct: 328 KVINDFVKQYKEQQANNNKKSKKKQDEVKEFVPLSGEAIREAINAVISVKLPECEFEGQT 387

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL + EVR VV     + L+ + EEHP     I +K ++A   RDAA++A    +RK 
Sbjct: 388 KGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATIAQKCINAQAARDAAKKA-MEAKRKS 446

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           V D ASLPGKLADCS+ DP+K+E+++VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A
Sbjct: 447 VTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSAKQGRDRRFQAILPLWGKMLNVEKA 506

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R DK+ ++ ++  ++ ALGTGIG+D FDI KLRY ++++M DADVDG+HIRTLLLTFFFR
Sbjct: 507 RADKVYNNDKLQPVVKALGTGIGED-FDITKLRYGRVVVMADADVDGSHIRTLLLTFFFR 565

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE---LFCDSKG 580
            M  LI  G +Y+ +PPL+ + RGK ++Y   +E  + Y+   +     +         G
Sbjct: 566 FMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEERDAYIAELAGESNAKVDVQRYKGLG 625

Query: 581 VISKNDLRN 589
            +    L  
Sbjct: 626 EMDPEQLWE 634



 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 130/326 (39%), Gaps = 34/326 (10%)

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLY------IIKPPLYGITRGKSLQYVKDEESLEDYL 563
           G  IR  +      ++P     G          ++P +Y IT  K   Y ++       +
Sbjct: 363 GEAIREAINAVISVKLPECEFEGQTKGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATI 422

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
             + ++ +       K + +K                  D  P   + +I +   +G   
Sbjct: 423 AQKCINAQAARDAAKKAMEAKRKSVTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSA 482

Query: 624 CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL------ 677
            +       ++       LN    +++K ++   +    +VK +  G+ E F +      
Sbjct: 483 KQGRDRRFQAILPLWGKMLNVEKARADKVYN--NDKLQPVVKALGTGIGEDFDITKLRYG 540

Query: 678 ------EGSSIFSFGSKYK-----RIFSNRIEEN----YLTILSLICNGDKIKITGPCSL 722
                 +     S           R     IEE         L  +  G K++       
Sbjct: 541 RVVVMADADVDGSHIRTLLLTFFFRFMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEE 600

Query: 723 LDTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            D   +         + +QRYKGLGEM+  QLWETT++P  R++++V + DA++AD++FS
Sbjct: 601 RDAYIAELAGESNAKVDVQRYKGLGEMDPEQLWETTMDPAARTMIKVNLEDAAKADEIFS 660

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRREFI++N+  +  LDI
Sbjct: 661 ILMGDKVEPRREFIEQNARYAKDLDI 686


>gi|295689649|ref|YP_003593342.1| DNA topoisomerase IV subunit B [Caulobacter segnis ATCC 21756]
 gi|295431552|gb|ADG10724.1| DNA topoisomerase IV, B subunit [Caulobacter segnis ATCC 21756]
          Length = 755

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 220/565 (38%), Positives = 312/565 (55%), Gaps = 18/565 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A  I++L+GL+ V+KRP MYIG TD E  LHH+  EVLDN++DE++ G+A  I V L
Sbjct: 114 EYSAADIEVLEGLEPVRKRPGMYIGGTD-ERALHHLFAEVLDNSMDEAVAGFAKTIEVKL 172

Query: 69  NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           + DG  +V D+GRG+P D H +  G SA EVIMT LHAGGKF  K+Y+ SGGLHGVG SV
Sbjct: 173 DADGFLSVKDDGRGMPVDPHPKYPGKSALEVIMTVLHAGGKFTGKAYETSGGLHGVGASV 232

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186
           VNALS  +++ + R+G  +   F  G    P+     +    GT V F P  +IF    +
Sbjct: 233 VNALSERVEVTVWRDGFEHLQVFARGKPLGPIQQVAPSKKK-GTMVRFKPDDEIFGEGTN 291

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           F    L    R  ++L   VQI             P E T  +  G+  F++   +    
Sbjct: 292 FKPARLYRMARSKAYLFRGVQIKWSCDPSRIHDQTPPEATFHFPNGLADFLAERTKGLTT 351

Query: 243 LMQSPIRIQGSRD------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +       +  R         ++    +    +   +  + N +P  +GGTH SG R+AL
Sbjct: 352 ITPESFSGRIERQGEAGAVEWAVTWTPQGFGEHDGFMQSYCNTVPTPEGGTHESGFRAAL 411

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y E     +     +  DD      +++S+ + +P F  QTKEKL +SE +  V
Sbjct: 412 TRGLKAYAELKGEKRGG--IITADDVVAQAGALISVFIKNPEFQGQTKEKLSTSEAQRFV 469

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + D    WL   P  A+ +++ V++ +  R   R+ ++   R        LPGKLAD
Sbjct: 470 EQALRDPFDLWLSSSPKNAQALLEFVIERAEERLKRRKDKE-VSRASATRKLRLPGKLAD 528

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C+      +ELF+VEGDSAGGSAKQ R R+ QAILPLRGKILNV  A  +K  +++E+  
Sbjct: 529 CAGSAVDGAELFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVASASGEKFTANKELSD 588

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L+ ALG   G   +    LRY +IIIMTDADVDGAHI +LL+TFF+R MP +I  G L++
Sbjct: 589 LMLALGAQ-GGSKYREEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPDVIRQGHLFL 647

Query: 537 IKPPLYGITRGKSLQYVKDEESLED 561
             PPLY I  G   +Y +D+   ++
Sbjct: 648 ALPPLYRIAHGGKSEYARDDAHKDE 672



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 8/188 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S      +   +L++ +  +  +    +       + ++      V    +    
Sbjct: 569 ILNVASASGEKFTANKELSDLMLALGAQGGSKYREEDLRYERIIIMTDADVDGAHIASLL 628

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F + +    I    +      +  +   G             LL T+F  G+K   + 
Sbjct: 629 ITFFYRTMPDVIRQGHLFLALPPLYRIAHGGKSEYARDDAHKDELLATVFK-GKK-PEIG 686

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKIT-DASQADDLFSRLMGDEVEPRREFIQENS 796
           R+KGLGEM A+QL ETT++P  R+L RV +       ++L   LMG + E R  FIQEN+
Sbjct: 687 RFKGLGEMMAAQLKETTMDPKKRTLARVTLPRHEESVEELVETLMGRKPELRFRFIQENA 746

Query: 797 --LPSALD 802
               + LD
Sbjct: 747 EFATADLD 754


>gi|306839001|ref|ZP_07471822.1| DNA topoisomerase IV, B subunit [Brucella sp. NF 2653]
 gi|306405907|gb|EFM62165.1| DNA topoisomerase IV, B subunit [Brucella sp. NF 2653]
          Length = 680

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/564 (41%), Positives = 336/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 39  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 97

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 98  VDKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 157

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 158 VVNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNA 217

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 218 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPGKAVFHFPGGLKDYLEASLGK 277

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 278 EHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 336

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 337 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVE 394

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 395 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 453

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 454 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 513

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 514 VQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 572

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 573 VPPLYRLSQGGKTAYARDDAHKEE 596



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 493 ILNVASAGREKLTANQQIADLVQALGCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 552

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L   G             LL T+F+ GR  I + 
Sbjct: 553 ITFFYQEMPELIRNGHLYLAVPPLYRLSQGGKTAYARDDAHKEELLRTVFT-GRGKIEIG 611

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 612 RFKGLGEMRADQLKETTMDPAKRTLLRVQVDEEYGDETRNTVDDLMGTKPEARFRFIQDR 671

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 672 AAFVEELDI 680


>gi|283768327|ref|ZP_06341239.1| DNA topoisomerase IV, B subunit [Bulleidia extructa W1219]
 gi|283104719|gb|EFC06091.1| DNA topoisomerase IV, B subunit [Bulleidia extructa W1219]
          Length = 640

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 257/659 (38%), Positives = 366/659 (55%), Gaps = 27/659 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+ DSIQIL+GL+AV+KRP MYIG  D   GLHH+I+E++DNAIDE+L G+
Sbjct: 1   MANK-----YNDDSIQILEGLEAVRKRPGMYIGAADSH-GLHHLIWEIVDNAIDEALNGF 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF-NQKSYKVSGG 119
              I +TL  DGS TV D+GRGIPT  H   G+   +VI T LHAGGKF +Q  YK +GG
Sbjct: 55  GKEIKITLEKDGSLTVEDHGRGIPTGRH-VSGMPTIQVIFTILHAGGKFTSQGGYKTAGG 113

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALS WL +    +G    MSF N G   + L   G     TGT V F P 
Sbjct: 114 LHGVGASVVNALSEWLVVESFHDGEHVRMSFKNGGKEASKLEKLGKTT-KTGTIVRFKPD 172

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF V  F+++ +  R RE +FL S + + + DKR  +  +    Y+ G+ AF+ YL  
Sbjct: 173 PAIFHVTHFHFEQVAERAREEAFLLSGISMVVEDKREGKEAKEVFHYENGLVAFLEYLHE 232

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +  +M+     +G    + +    ++ D Y EN   + N +   DGG+H  G + A T+
Sbjct: 233 DRHVIMEPVK-FEGEYQGVEVACIFQYTDDYQENTYSYANLVHTGDGGSHEVGFKGAFTK 291

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356
            +  Y  K    K   +++ G D REG T+++S+++P+    F +Q K KL +   ++ V
Sbjct: 292 AMNEYARKYGLLKAKDKNLDGLDVREGLTTIISVRVPEDYLEFQAQVKSKLTTPLAKTAV 351

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKL 414
           E+ V + LS WLEEH  EA  ++KK+  A   R+AAR+A++  R+   L        GKL
Sbjct: 352 ENVVLEKLSFWLEEHRNEADDLIKKMQRAQQAREAARKAKENVRKGKNLGKGEKVLSGKL 411

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           A    ++ K  ELFLVEGDSAGGSAKQGR    QAILPLRGK+LN E     ++  ++E+
Sbjct: 412 APAQTKNSKIKELFLVEGDSAGGSAKQGRDSHYQAILPLRGKVLNTEHVSMTEIEKNEEL 471

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            TLI  LG G+G++ F I+ + Y K+IIMTDAD DG+HI+ LLLTFFFR M  L+  G +
Sbjct: 472 NTLIYTLGAGVGKE-FIIDDVNYGKVIIMTDADDDGSHIQILLLTFFFRYMRPLVEQGMV 530

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI  PPLY +++GK +QY   +E LE+  +   L +         G ++   L       
Sbjct: 531 YIALPPLYKVSKGKEVQYCYSDEELEE--LKAKLGKVEIQRYKGLGEMNATQLW------ 582

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
              +  +   +    +  I+  +I+             S    +   + F  E S K  
Sbjct: 583 ---ETTMDPDHRTLIQVNIDDLLIAEKRVSMLMGNKPESRRHWIEENIQFTLEDSFKGE 638



 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 103/257 (40%), Gaps = 10/257 (3%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            + R +  +    +              E  L        +KN   + I +   ++    
Sbjct: 376 KMQRAQQAREAARKAKENVRKGKNLGKGEKVLSGKLAPAQTKN---SKIKELFLVEGDSA 432

Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                  +    QA++     V N E      +    +L   +  +     K +     N
Sbjct: 433 GGSAKQGRDSHYQAILPLRGKVLNTEHVSMTEIEKNEELNTLIYTLGAGVGKEFIIDDVN 492

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
              ++  +     +   ++   +  F    + +    +    L  L  +  G +++    
Sbjct: 493 YGKVI-IMTDADDDGSHIQILLLTFFFRYMRPLVEQGMVYIALPPLYKVSKGKEVQYCYS 551

Query: 720 CSLLDTIF-SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
              L+ +   +G+  + +QRYKGLGEMNA+QLWETT++PD R+L++V I D   A+   S
Sbjct: 552 DEELEELKAKLGK--VEIQRYKGLGEMNATQLWETTMDPDHRTLIQVNIDDLLIAEKRVS 609

Query: 779 RLMGDEVEPRREFIQEN 795
            LMG++ E RR +I+EN
Sbjct: 610 MLMGNKPESRRHWIEEN 626


>gi|90419643|ref|ZP_01227553.1| type IIA topoisomerase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336580|gb|EAS50321.1| type IIA topoisomerase [Aurantimonas manganoxydans SI85-9A1]
          Length = 684

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 229/626 (36%), Positives = 340/626 (54%), Gaps = 23/626 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++  + S Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE+  G+A
Sbjct: 37  ANLQEPSEYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEATAGHA 95

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           + I V L  DG+ +V+DNGRGIP D H +    SA EVIMT LHAGGKF+ K Y+ SGGL
Sbjct: 96  NFIEVALEADGTLSVADNGRGIPIDPHPKYRDKSALEVIMTTLHAGGKFDSKVYETSGGL 155

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L++ + R   +Y  ++  G     L   G   N  GT + F P  +
Sbjct: 156 HGVGVSVVNALSETLEVEVARNRRLYRQTYSRGHAQTGLEEIGDIQNRRGTRIRFRPDPE 215

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFV 233
           IF +   F  + L    R  ++L   V+I               P   T  + GG++ ++
Sbjct: 216 IFGAGARFRPERLLAMARSKAYLFGGVEIRWACDPSLLPADGSVPSRDTFHFPGGLKDYL 275

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                 +  +       +  + +    +   ++   +DG+   V  + N IP  +GGTH 
Sbjct: 276 DGTLDKQGRVTSQIFAGRTEKVSGHGAVEWAVSWTADDGF---VRSYCNTIPTPEGGTHE 332

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GLRS L R + ++ E S   +     + GDD     +++LS+ + +P F  QTK++L +
Sbjct: 333 AGLRSVLLRGLKAFAEVSGNKRAA--VITGDDIMLTASAMLSVFIREPEFVGQTKDRLAT 390

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +E + +VE  + D    WL   P +A  ++  V++ +  R   R+ ++   RK       
Sbjct: 391 AEAQRIVEQSMRDSFDIWLASSPQDAARLIDWVVERADERLRRRQEKE-VSRKSATRKLR 449

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS+     +E+F+VEGDSAGGSAKQ R R+ QAILPLRGKILNV  A  +K  
Sbjct: 450 LPGKLADCSQSGSVNAEIFIVEGDSAGGSAKQARDRKVQAILPLRGKILNVASAGREKFG 509

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++Q++  LI ALG G  +  +    LRY ++IIMTDADVDGAHI +LL+TFF+++MP LI
Sbjct: 510 ANQQLADLIQALGCGT-RSKYREEDLRYERVIIMTDADVDGAHIASLLITFFYQEMPELI 568

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G L++  PPLY +T+G    Y +D+   E  +               KG+     L  
Sbjct: 569 RGGHLFLAVPPLYKLTQGGKTAYARDDADRERLIARDFKGRGKVEISRFKGL--GEMLPA 626

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQ 615
            + +   +D   +     H     E 
Sbjct: 627 QLKE-TTMDPRKRTLLRVHMDETPEA 651



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 93/279 (33%), Gaps = 10/279 (3%)

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +++   P         +    DE          S             +   +   +   +
Sbjct: 407 IWLASSPQDAARLIDWVVERADERLRRRQEKEVSRKSATRKLRLPGKLADCSQSGSVNAE 466

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
              ++           +    QA++     + N  S          +LA+ +  +   + 
Sbjct: 467 IFIVEGDSAGGSAKQARDRKVQAILPLRGKILNVASAGREKFGANQQLADLIQALGCGTR 526

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
             +       + ++      V    +      F +    + I    +      +  L   
Sbjct: 527 SKYREEDLRYERVIIMTDADVDGAHIASLLITFFYQEMPELIRGGHLFLAVPPLYKLTQG 586

Query: 711 GDKIKITGPCSLLDTIFSIGRKG---ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           G            + + +   KG   + + R+KGLGEM  +QL ETT++P  R+LLRV +
Sbjct: 587 GKTAYARDDADR-ERLIARDFKGRGKVEISRFKGLGEMLPAQLKETTMDPRKRTLLRVHM 645

Query: 768 TDASQA--DDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
            +  +A      S LMG++ E R  F+Q+ +     LDI
Sbjct: 646 DETPEAGTSGAVSALMGNKPEARFRFLQDRAAFVEDLDI 684


>gi|126735157|ref|ZP_01750903.1| DNA topoisomerase IV, B subunit [Roseobacter sp. CCS2]
 gi|126715712|gb|EBA12577.1| DNA topoisomerase IV, B subunit [Roseobacter sp. CCS2]
          Length = 652

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/648 (37%), Positives = 334/648 (51%), Gaps = 18/648 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N     Y+ADSI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE++ G+A+ 
Sbjct: 8   NKGPDDYNADSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEAVAGHANR 66

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I V L+ D S T+ DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+ SGGLHG
Sbjct: 67  IEVELHADYSVTIKDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS  L +++ R   IYE  F  GI   P+   GSA N  GT  TF   ++IF
Sbjct: 127 VGASVVNALSDSLVVQVARNKEIYEQRFSRGIPLGPVEKVGSAPNRRGTTFTFHADAEIF 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVSYLDRHK 240
               F    L   +R  ++L S V+I    +      P E T  + GG+  ++       
Sbjct: 187 GSHRFKPARLFKSIRSKAYLFSGVEIRWKSEIDDGETPTEATFHFPGGLSDYLKETLGTA 246

Query: 241 KPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                 P        +   +   ++ A+ W       +  + N +P  +GGTH+SG  +A
Sbjct: 247 TTYADKPFAGTVDFQEKFGEPGKVEWAINWTPVRDGFIQSYCNTVPTPEGGTHVSGFWAA 306

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           + + I +Y E S         +  DD   G  +++S  + DP F  QTK++L S     +
Sbjct: 307 ILKGIKAYGELSGNK--KAGQITRDDLMSGGCALVSCFIRDPAFVGQTKDRLSSEIAAKM 364

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
            E  V D    WL      A  I+  ++         RR    T RK       LPGKL 
Sbjct: 365 TEGAVRDHFDNWLANDTKSAGAILDFLVLR-AEERLRRRQEKETARKSATKKLRLPGKLT 423

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+ +D   +ELF+VEGDSAGGS K  R R+ QA+LPL+GKILNV  A   K+ ++ EI 
Sbjct: 424 DCTSKDRVGTELFIVEGDSAGGSGKGARDRKTQALLPLKGKILNVLGAASSKLTTNAEIN 483

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  LI  G LY
Sbjct: 484 DLCEALGVGMG-TKFNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDQGHLY 542

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI--ELFCDSKGVISKNDLRNFIDD 593
           +  PPLY +T+G    YV D+   +  +      +           G +   DL+    D
Sbjct: 543 LACPPLYRLTQGAKRVYVADDAEKDAVMAKGLGGKGKIDLQRFKGLGEMDAKDLKETTMD 602

Query: 594 ---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                 I   + D  P      +E+ +           + N     +L
Sbjct: 603 PATRKLIRVTVHDDEPGDTADLVERLMGKKPELRFQYIQENARFVEEL 650



 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 7/157 (4%)

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++      D ++      V    +      F F      I    +      +  L     
Sbjct: 497 FNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDQGHLYLACPPLYRLTQGAK 556

Query: 713 KIKITGPCSLLDTIFS--IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           ++ +       D + +  +G KG I +QR+KGLGEM+A  L ETT++P TR L+RV + D
Sbjct: 557 RVYVADDAE-KDAVMAKGLGGKGKIDLQRFKGLGEMDAKDLKETTMDPATRKLIRVTVHD 615

Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
                  DL  RLMG + E R ++IQEN+     LD+
Sbjct: 616 DEPGDTADLVERLMGKKPELRFQYIQENARFVEELDV 652


>gi|92117840|ref|YP_577569.1| DNA topoisomerase IV subunit B [Nitrobacter hamburgensis X14]
 gi|91800734|gb|ABE63109.1| DNA topoisomerase IV subunit B [Nitrobacter hamburgensis X14]
          Length = 683

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 247/655 (37%), Positives = 352/655 (53%), Gaps = 26/655 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             + Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DNA+DE+L G+A  I 
Sbjct: 36  AEADYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNAMDEALAGHATFIV 94

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L  DG  TV+DNGRGIP D H +    SA EVIM  LH+GGKF+ K Y+ SGGLHGVG
Sbjct: 95  VELAADGFLTVTDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVG 154

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALSS L++ + R  N+Y+M+F  G     L   G   N  GT + F P +DIF  
Sbjct: 155 VSVVNALSSRLEVEVARSQNLYKMTFERGHPRGSLDDLGRISNRRGTTIRFKPDTDIFGP 214

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    L    R  ++L   V+I               P E T  + GG++ +++   
Sbjct: 215 KAAFKPQRLFKMTRSKAYLFGGVEIRWRCAPDLLKGLDDIPAEATFHFPGGLKDYLAAAI 274

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                +       +  R+  + + + A+ W       +  + N +P  DGGTH SGLRSA
Sbjct: 275 HKDTLVHPDIFSGKSGRNGAHGACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGLRSA 334

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R +  + E+    K    SV  +D   G  ++LS+ + +P F  QTK++L +SE   +
Sbjct: 335 LLRGLKDHAERVGQGKHA-ASVTSEDLMVGAAAMLSVFVREPEFQGQTKDRLATSEASRI 393

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + D    WL  +P++A  ++  V++ +  R   R  ++ T RK  +    LPGKLA
Sbjct: 394 VEQAIKDPFDHWLSGNPVQANKLLDFVIERADERLRRRAEKE-TSRKSAVKKLRLPGKLA 452

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+      SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK+ ++ ++ 
Sbjct: 453 DCTNTATDGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASATRDKVTANAQLS 512

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G G  ++    LRY ++IIMTDADVDGAHI +LL+TFF+RQM  LI  G LY
Sbjct: 513 DLIQALGCGTG-TNYREEDLRYSRVIIMTDADVDGAHIASLLITFFYRQMRPLIDEGHLY 571

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +  PPLY +T G    Y +D+   +  L ++  +         KG+     +   +    
Sbjct: 572 LAVPPLYRLTHGSKTVYARDDAHKDALLKSEFNANAKVDVGRFKGL--GEMMPAQLK--- 626

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +  +        +  +      G         +   + +K   R  FI+EK+E
Sbjct: 627 --ETTMDPARRTMLRVVLLAEDRDGT-----ADSVERLMGTKAEARFAFISEKAE 674



 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R++LRV +   D     D   RLMG + E R  FI E 
Sbjct: 613 RFKGLGEMMPAQLKETTMDPARRTMLRVVLLAEDRDGTADSVERLMGTKAEARFAFISEK 672

Query: 796 SLPSA---LDI 803
           +  ++   LD+
Sbjct: 673 AEFASEDLLDV 683


>gi|70949679|ref|XP_744228.1| dna gyrase subunit b [Plasmodium chabaudi chabaudi]
 gi|56524094|emb|CAH87968.1| dna gyrase subunit b, putative [Plasmodium chabaudi chabaudi]
          Length = 846

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 276/893 (30%), Positives = 415/893 (46%), Gaps = 182/893 (20%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YDA  I IL+GL+AV+KRP MYIG+TD   GLH +++E++DNA+DE      + I V 
Sbjct: 27  NNYDAKDIVILEGLEAVRKRPGMYIGNTDS-KGLHQILFEIVDNAVDEYNNHECNQIKVI 85

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---------------------- 105
           ++ D S T+ DNGRGIP D+H++   SA E ++T LH+                      
Sbjct: 86  IHNDESVTIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFLDDDTNMVVEEEKGKQKK 145

Query: 106 -------------------------GGKFNQKS---------YKVSGGLHGVGVSVVNAL 131
                                    G K N+           YK S GLHGVG+SV NAL
Sbjct: 146 TKKDVQETGNANVSNNSKGTDTSVDGTKENKDKNKTNESLQKYKYSSGLHGVGLSVSNAL 205

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYD 190
           S+++K+ + R+  IY +    G +   L V        GT++ + P + IF      N +
Sbjct: 206 STFMKVNVFRDNKIYNIELEKGKVVKELNVQDCPIKKRGTQIHYKPDNTIFKTNIKHNSE 265

Query: 191 TLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREITMFYKGGI 229
            +++RL +L++LN  +     D+R+                            + ++GG+
Sbjct: 266 FIKNRLHQLAYLNDKLTFYFYDERNSNKGNNDNVSENGENNSYNKLDNYDYEIIKHEGGL 325

Query: 230 EAFVSYLDRHKKPLMQ---SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDG 285
           + ++  L ++K  L +     I I   + NI +DL ++W  + Y+EN+L F NN+   DG
Sbjct: 326 DEYMEKLTKNKTNLFKVNNKVISISCFQKNIHVDLKLKWVTNQYNENILSFVNNVNTIDG 385

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH+  ++ A++R I   V+K+   K +  ++ G+  REG T++LSIKM +P F  QTK 
Sbjct: 386 GTHVDAMKYAISRSINYNVKKNESIK-NFVNIPGEYIREGLTAILSIKMNNPEFEGQTKT 444

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL S  ++ ++ES + + LS   +  P     I  K L A    + A+ ARDL R K   
Sbjct: 445 KLGSYYLKPILESIIFEKLSEVFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSKNNQ 504

Query: 406 DIASL-PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER-A 463
             +++ PGKL DC   D  K+E+F+VEGDSA GSAKQ R+RE QAILPL+GKILNVE+  
Sbjct: 505 YYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIK 564

Query: 464 RFDKMLSSQEIGTLITALGT---------------------GIGQDSFDINKLRYHKIII 502
              K+  + E+ +LITA+G                       I +++F  N LRY KIII
Sbjct: 565 NNKKIFENVELKSLITAIGLNVNYDNNKTGKSNTNKRNDNKDIKKNNFIDNSLRYGKIII 624

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDG HI  LLLTF +R    +I NG +Y+  PPLY +             +   +
Sbjct: 625 MTDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKV-------------TYNKF 671

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
             N      I  F                  +  I     D   N     ++        
Sbjct: 672 FDNNIKDRVISKFN------------VTTKASKYIIHTYSDSELNELLALLDMDKAQTFE 719

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682
           N  + ++           +LN   E    +   S N+ D      +   Q    +     
Sbjct: 720 NKNNLKKRKKENFINGQGKLNATNEDENNANFDSQNDQD-----TSEQNQTNSFINNDMP 774

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742
           FS   KY                                              +QR+KGL
Sbjct: 775 FSSSKKY---------------------------------------------EIQRFKGL 789

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GEM A QLW TT++P  R L+RV ++DA +A++L + LMG++ + R++FI +N
Sbjct: 790 GEMMADQLWSTTMDPQVRKLIRVTVSDAIKANNLINSLMGEDSKSRKDFIIKN 842


>gi|320095115|ref|ZP_08026824.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977982|gb|EFW09616.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 680

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 269/638 (42%), Positives = 372/638 (58%), Gaps = 32/638 (5%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A  I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GYAD I VT
Sbjct: 18  ATYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYADHIEVT 76

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DG   V DNGRGIP D H  E     EV+MT LHAGGKF    Y VSGGLHGVG+SV
Sbjct: 77  IQSDGGIKVVDNGRGIPVDEHPTEHRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISV 136

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +   I+R+G+++ MSF N G    PL        +TGT   F P   IF   +
Sbjct: 137 VNALSTRVDTEIRRQGHVWRMSFANGGTPVTPLERG-EETTETGTTQVFYPDPSIFETVE 195

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS--------------------PEPREITMFYK 226
           F+++TL+ R ++++FLN  ++I+L D+R                        R +T  Y+
Sbjct: 196 FDFETLRQRFQQMAFLNKGLRITLTDERENAIEEGDEIAGAPDEDPQEAGGRRSVTYCYE 255

Query: 227 GGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
            G+  +V Y    +    +    I  +       +S+++AM+W   Y  +V  F N I  
Sbjct: 256 HGLRDYVEYLDSAKKTDTINNEIIDFEAENDEGTMSVEIAMQWTGAYSSSVHTFANTINT 315

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GG H  G R+ALT  +  Y       +    ++ GDD REG T+V+SIK+ +P+F  Q
Sbjct: 316 TEGGMHEEGFRTALTSLVNRYGRDKGLIRDKDDNLTGDDVREGLTAVISIKLTEPQFEGQ 375

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++E R+ V   V   L+ W + HP +AK I+ K   A   R AAR+AR+ TRRK
Sbjct: 376 TKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIIAKGQAAQAARVAARKAREATRRK 435

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           GVL+ AS+PGKL DCS R P + E+F+VEGDSAGGSA  GR  E QAILP+RGKILNVE+
Sbjct: 436 GVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILPIRGKILNVEK 495

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR D+ LSS  I +LITA GTGIG++ FDI KLRY KI+IM DADVDG HI TLLLT  F
Sbjct: 496 ARLDRALSSDTIRSLITAFGTGIGEE-FDIEKLRYGKIVIMADADVDGQHIATLLLTLLF 554

Query: 523 RQMPSLIHNGFLYIIKPPLYGITR-GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           R M  LI  G  +I  PPLY +       ++   ++  ++     ++          +G 
Sbjct: 555 RYMRPLIEGGHTFIAMPPLYRLKWTNSDHEFAYSDKERDEL---LAVGAAANKRLPKEGG 611

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           I +      ++D    +  +   +    +  +++A  +
Sbjct: 612 IQRYKGLGEMNDHELWETTMDPEHRILKQVTLDEAADA 649



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LWETT++P+ R L +V + +A+ AD+ F+ LMGD+V+ RR FIQ N
Sbjct: 612 IQRYKGLGEMNDHELWETTMDPEHRILKQVTLDEAADADETFTILMGDDVDRRRTFIQRN 671

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 672 ATDVRFLDI 680


>gi|167751440|ref|ZP_02423567.1| hypothetical protein EUBSIR_02436 [Eubacterium siraeum DSM 15702]
 gi|167655686|gb|EDR99815.1| hypothetical protein EUBSIR_02436 [Eubacterium siraeum DSM 15702]
          Length = 692

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 275/609 (45%), Positives = 379/609 (62%), Gaps = 26/609 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +     +Y AD IQIL+GL+AV+KRP MYIG T GESGLHH++YE++DNAIDE+L GY  
Sbjct: 36  NTQVEHAYGADDIQILEGLEAVRKRPGMYIGST-GESGLHHLVYEIVDNAIDEALAGYCT 94

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +       V+DNGRGIPT +H +E ISAA V+ T LHAGGKF    YKVSGGLHG
Sbjct: 95  EINVKILPGDVIEVTDNGRGIPTGIHPKEKISAATVVYTILHAGGKFGGGGYKVSGGLHG 154

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALS WL+L +     I+   F N G     + V G   + TGT+V F P S I
Sbjct: 155 VGASVVNALSEWLELTVYDGKEIHFQRFENGGHYKEQMKVIG-TTDKTGTQVRFKPDSTI 213

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSY--LDR 238
           F   +F YD L  RLRE +FLN+ ++I L D +   +P++  + Y+GGI ++V +    R
Sbjct: 214 FHSTEFKYDILLDRLREQAFLNAGLKIVLSDLRDEDKPKQEVLQYEGGIISYVEWLQKKR 273

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALT 297
             + L    + I+G  DNIS+++A ++N  ++ E    F NNI   DGGTH    ++AL 
Sbjct: 274 GAEALHPDVVYIEGLLDNISVEIAFQYNTDFNSETFRSFANNIHTVDGGTHEIAFKNALN 333

Query: 298 RQITSYVEKSFGSK--------------KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           + I  +V++    +              K+   + G+  RE   +V+S+K+P+  F  QT
Sbjct: 334 KVINDFVKQYKEQQANNNKKSKKKQDEVKEFVPLSGEAIREAINAVISVKLPECEFEGQT 393

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL + EVR VV     + L+ + EEHP     I +K ++A   RDAA++A    +RK 
Sbjct: 394 KGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATIAQKCINAQAARDAAKKA-MEAKRKS 452

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           V D ASLPGKLADCS+ DP+K+E+++VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A
Sbjct: 453 VTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSAKQGRDRRFQAILPLWGKMLNVEKA 512

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R DK+ ++ ++  ++ ALGTGIG+D FDI KLRY ++++M DADVDG+HIRTLLLTFFFR
Sbjct: 513 RADKVYNNDKLQPVVKALGTGIGED-FDITKLRYGRVVVMADADVDGSHIRTLLLTFFFR 571

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE---LFCDSKG 580
            M  LI  G +Y+ +PPL+ + RGK ++Y   +E  + Y+   +     +         G
Sbjct: 572 FMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEERDAYIAELAGESNAKVDVQRYKGLG 631

Query: 581 VISKNDLRN 589
            +    L  
Sbjct: 632 EMDPEQLWE 640



 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 130/326 (39%), Gaps = 34/326 (10%)

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLY------IIKPPLYGITRGKSLQYVKDEESLEDYL 563
           G  IR  +      ++P     G          ++P +Y IT  K   Y ++       +
Sbjct: 369 GEAIREAINAVISVKLPECEFEGQTKGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATI 428

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
             + ++ +       K + +K                  D  P   + +I +   +G   
Sbjct: 429 AQKCINAQAARDAAKKAMEAKRKSVTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSA 488

Query: 624 CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL------ 677
            +       ++       LN    +++K ++   +    +VK +  G+ E F +      
Sbjct: 489 KQGRDRRFQAILPLWGKMLNVEKARADKVYN--NDKLQPVVKALGTGIGEDFDITKLRYG 546

Query: 678 ------EGSSIFSFGSKYK-----RIFSNRIEEN----YLTILSLICNGDKIKITGPCSL 722
                 +     S           R     IEE         L  +  G K++       
Sbjct: 547 RVVVMADADVDGSHIRTLLLTFFFRFMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEE 606

Query: 723 LDTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            D   +         + +QRYKGLGEM+  QLWETT++P  R++++V + DA++AD++FS
Sbjct: 607 RDAYIAELAGESNAKVDVQRYKGLGEMDPEQLWETTMDPAARTMIKVNLEDAAKADEIFS 666

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRREFI++N+  +  LDI
Sbjct: 667 ILMGDKVEPRREFIEQNARYAKDLDI 692


>gi|259508306|ref|ZP_05751206.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314]
 gi|259164124|gb|EEW48678.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314]
          Length = 660

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 268/663 (40%), Positives = 375/663 (56%), Gaps = 52/663 (7%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T G  GLHH+I+EV+DN++DE++ GYAD + VTL  DG   V DNGRGIP ++H 
Sbjct: 1   MYIGST-GSRGLHHLIWEVVDNSVDEAMAGYADRVDVTLLEDGGVEVIDNGRGIPVEMHA 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
             G    +V+MT+LHAGGKF+  SY VSGGLHGVG+SVVNALS+ ++  IK++G  +  +
Sbjct: 60  S-GAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRVEAHIKKDGKHWYQN 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F N I    L V G+    TGT + F P ++IF   DF++DT+  RL+E++FLN  + ++
Sbjct: 119 FNNSIP-EDL-VEGANARGTGTSIRFWPDAEIFETTDFDFDTISRRLQEMAFLNKGLTMT 176

Query: 210 LIDKRSPEPREIT----------------------------------------------M 223
           L D R+ +                                                    
Sbjct: 177 LTDNRASDEELELEALAEQGDTAVELSLDQIDADGETQLVDAEVTDAPKKPKKREKKKIF 236

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y  G+E +V++L+R K P+  S +  +       +++AM+WN  Y E+V  F N I   
Sbjct: 237 HYPNGLEDYVNHLNRTKTPIHPSIVSFEAKAAEHEVEIAMQWNSSYKESVHTFANTINTF 296

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           +GGTH  G RSALT  +  Y  +    K+ + ++ GDDCREG ++V+S+++ +P+F  QT
Sbjct: 297 EGGTHEEGFRSALTSLMNRYAREHKLLKEKEANLTGDDCREGLSAVISVRVSEPQFEGQT 356

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL ++E++S V+   N+ +  WLE +P EAK+I+ K + ++  R AAR+ARDL RRK 
Sbjct: 357 KTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKVIINKAVGSAQARLAARKARDLVRRKS 416

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
             D+  LPGKLADC  +DP+KSEL++VEGDSAGGSAK GR    QAILPLRGKILNVE+A
Sbjct: 417 ATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKILNVEKA 476

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R DK+L + E+  +ITALGTGI  D FDINKLRYHKI++M DADVDG HI TLLLT  FR
Sbjct: 477 RLDKVLKNSEVQAIITALGTGI-HDEFDINKLRYHKIVLMADADVDGQHIATLLLTLLFR 535

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
            MP LI  G +Y+ +PPLY +   +    +   +E  +  L     +       D     
Sbjct: 536 FMPDLIAEGHVYLAQPPLYKLKWQRGEPGFAYSDEERDQQLEEGLAAGRKINKDDGIQRY 595

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
                 N  +                D    ++A          D     S  ++ A  +
Sbjct: 596 KGLGEMNPNELWETTMDPSVRILRRVDLADAQRADELFSILMGDDVVARRSFITRNAKDV 655

Query: 643 NFI 645
            F+
Sbjct: 656 RFL 658



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 6/86 (6%)

Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
           L+   + GRK I+    +QRYKGLGEMN ++LWETT++P  R L RV + DA +AD+LFS
Sbjct: 576 LEEGLAAGRK-INKDDGIQRYKGLGEMNPNELWETTMDPSVRILRRVDLADAQRADELFS 634

Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803
            LMGD+V  RR FI  N+     LD+
Sbjct: 635 ILMGDDVVARRSFITRNAKDVRFLDV 660


>gi|114327348|ref|YP_744505.1| DNA topoisomerase IV subunit B [Granulibacter bethesdensis CGDNIH1]
 gi|114315522|gb|ABI61582.1| DNA gyrase subunit B [Granulibacter bethesdensis CGDNIH1]
          Length = 677

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/596 (38%), Positives = 340/596 (57%), Gaps = 23/596 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             +    Y A  I++L+GL+ V++RP MYIG TD E+ LHH++ E+LDNA+DE++ G+A 
Sbjct: 22  TEMNEDDYSAKDIEVLEGLEPVRRRPGMYIGGTD-ENALHHLVAEILDNAMDEAVAGHAT 80

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           +I +TL+   + T+ DNGRGIP D H + + +SA EVI+T LH+GGKF  K+Y  SGGLH
Sbjct: 81  VIDLTLDPGNTVTIRDNGRGIPIDPHPKFKNLSALEVILTTLHSGGKFAGKAYATSGGLH 140

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS+ +++ + R   ++  S+  G    PL+  G+A N  GT++ F P  +I
Sbjct: 141 GVGSSVVNALSATMEVEVARNRVLWRQSYARGKPMTPLIEVGAAPNRRGTQIRFTPDEEI 200

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------SPEPREITMFYKGGIEAFV 233
           F   +F+   L    R  ++L   VQI                 P E T+ + GG+   +
Sbjct: 201 FGRLNFSPARLYRLCRSKAYLFRGVQIRWKCDPSLLKNSGKEDIPAEATLHFPGGLRDSL 260

Query: 234 SYLDRHKKPLMQSPIRIQGS---------RDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +         +      +           +    ++ A+ W DG    V  + N +P   
Sbjct: 261 ADDIGETTLAIPQIWSGEADMKGDGQKETQTGGRVEWALAWLDGADGFVHSYCNTVPTPL 320

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH  G R+AL + + ++ E+    +    ++  +D      + LS  + +P+F  QTK
Sbjct: 321 GGTHEQGFRAALLKGLRAWGEQRGNKRAA--AITAEDIMGSLAAKLSAFVREPQFQGQTK 378

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           EKL S E   +VES + D    ++   P  A  ++  V++ +  R   R  +D T RK  
Sbjct: 379 EKLTSPEAVRLVESAMRDRFDHFMAGDPAGADNLLAYVIERAEERIRRREQKD-TPRKSA 437

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
                LPGKLADCS  +  ++ELFLVEGDSAGGSAKQ R RENQA+LPLRGKILNV  A 
Sbjct: 438 TRRLRLPGKLADCSSENAAETELFLVEGDSAGGSAKQARRRENQAVLPLRGKILNVASAS 497

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            DK+  +QE+  LI ALG G+G+  FDI +LRY ++IIMTDADVDGAHI +LL+TFF+R+
Sbjct: 498 ADKLRQNQELKDLIEALGCGVGER-FDIARLRYGRVIIMTDADVDGAHIASLLMTFFYRE 556

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           +P L+  G LY+ +PPLY +T+G + +Y  D+  L+  + +             KG
Sbjct: 557 LPELVRRGHLYLAQPPLYRLTQGATSRYAMDDAELDRLMKSGFKKTGKIEVSRFKG 612



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 9/204 (4%)

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
              ++  +   +   + N  S     +    +L + +  +     + +  +      ++ 
Sbjct: 477 RRENQAVL--PLRGKILNVASASADKLRQNQELKDLIEALGCGVGERFDIARLRYGRVII 534

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
                V    +      F +    + +    +      +  L               LD 
Sbjct: 535 MTDADVDGAHIASLLMTFFYRELPELVRRGHLYLAQPPLYRLTQGATSRYAMDDAE-LDR 593

Query: 726 IFSIGRKG---ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK--ITDASQADDLFSRL 780
           +   G K    I + R+KGLGEM  + L +TT++P  R LL+V     D  +  +L   L
Sbjct: 594 LMKSGFKKTGKIEVSRFKGLGEMPPAILKDTTMDPARRVLLKVLTPPEDRVRTGELVESL 653

Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803
           MG + E R +FIQ+N+  +  LDI
Sbjct: 654 MGKKPELRFQFIQDNAPRAGDLDI 677


>gi|19909655|dbj|BAB87023.1| DNA gyrase subunit B [Vibrio gazogenes]
          Length = 463

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 276/466 (59%), Positives = 366/466 (78%), Gaps = 4/466 (0%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAE 97
            +GLHHM++EV+DN+IDE+L GY   I VT++ D S +VSD+GRGIPT+LH+EE +SAAE
Sbjct: 1   GTGLHHMVFEVVDNSIDEALAGYCKDIIVTIHEDNSVSVSDDGRGIPTELHEEENVSAAE 60

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           VIMT LHAGGKF+  SYKVSGGLHGVG+SVVNALS  + L I R G+IY  ++ +G+  +
Sbjct: 61  VIMTVLHAGGKFDDNSYKVSGGLHGVGISVVNALSEKVALTIYRSGHIYTQTYHHGVPQS 120

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           PL   G     +GT V F PSS+ F+  +F+Y+ L  RLRELSFLNS V I LID+R  +
Sbjct: 121 PLASVGDTE-KSGTLVRFWPSSETFTNIEFHYEILAKRLRELSFLNSGVSIKLIDERDSK 179

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCF 276
             +    Y+GGI+ FVS+L+R+K P+          R++ I++++AM+WND + E++ CF
Sbjct: 180 --QDHFRYEGGIQEFVSHLNRNKTPIHDRVFHFNQEREDGITVEVAMQWNDSFQESIFCF 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTH++G R+ALTR + ++++K   SKK+K S  GDD REG T+V+S+K+PD
Sbjct: 238 TNNIPQRDGGTHMAGFRAALTRTLNTFMDKEGFSKKEKTSTSGDDAREGLTAVISVKVPD 297

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+S VE+ + + LS +L E+P EAKI+  K++DA+  R+AAR+AR
Sbjct: 298 PKFSSQTKDKLVSSEVKSAVETAMGEKLSEFLIENPNEAKIVCSKIIDAARAREAARKAR 357

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 358 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 417

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 418 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 463


>gi|13471034|ref|NP_102603.1| DNA topoisomerase IV subunit B [Mesorhizobium loti MAFF303099]
 gi|14021778|dbj|BAB48389.1| DNA topoisomerase [Mesorhizobium loti MAFF303099]
          Length = 685

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 230/659 (34%), Positives = 350/659 (53%), Gaps = 30/659 (4%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +    +  Y A  I++L+GL+ V++RP MYIG TD    +HH+  EV+DN++DE++ G+A
Sbjct: 38  ATKDGSEGYSAADIEVLEGLEPVRRRPGMYIGGTDD-KAMHHLFAEVIDNSMDEAVAGHA 96

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V L+ DG  TV+DNGRGIP D H +    A EVIMT LH+GGKF+ K Y+ SGGLH
Sbjct: 97  TFIDVELSADGFLTVTDNGRGIPVDPHPKFKKPALEVIMTTLHSGGKFDSKVYETSGGLH 156

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ + R   +Y   F  GI  + L   G   N  GT++ F P   I
Sbjct: 157 GVGVSVVNALSDHLEVEVARGRQLYRQRFSRGIPVSGLEQLGEVHNRRGTKIRFHPDEQI 216

Query: 182 FSV-QDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVS 234
           F     F    L    R  ++L   V+I          ++   P +    + GG++ ++ 
Sbjct: 217 FGKGAAFEPARLYRMTRSKAYLFGGVEIRWTCDPSLIKEKDQTPAKAEFHFPGGLKDYLK 276

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
                   + +     +  +   + S++ A+ W  G    +  + N IP  +GGTH +G 
Sbjct: 277 ASLGDDFQVTREIFAGKSEKQGGHGSLEWAVTWFGG-DGFINSYCNTIPTGEGGTHEAGF 335

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ LTR + +Y +     +     V  +D       +LS+ + +P F  QTK++L + E 
Sbjct: 336 RNVLTRGLRAYADLVGNKRAS--IVTSEDVMISAAGMLSVFIREPEFVGQTKDRLATIEA 393

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA-ARRARDLTRRKGVLDIASLP 411
             +VE+ + D    WL ++P EA  +++ V   +   +   RR      RK  +    LP
Sbjct: 394 IRIVETAIRDPFDHWLADNPQEASKLLEWV--IARADERVRRRQEKEVSRKSAVRKLRLP 451

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC++     +ELF+VEGDSAGGSAKQ R R +QA+LPLRGKILNV  A  DK+ ++
Sbjct: 452 GKLADCTQNAAAGAELFIVEGDSAGGSAKQARDRASQAVLPLRGKILNVASAGNDKLAAN 511

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           Q+I  LI ALG G  +  +    LRY ++IIMTDADVDGAHI +LL+TFF+++MP+L+  
Sbjct: 512 QQISDLIQALGCGT-RSKYRDEDLRYDRVIIMTDADVDGAHIASLLITFFYQEMPALVRG 570

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G LY+  PPLY I +G  + Y +D+   ++ L  +            KG+     + + +
Sbjct: 571 GHLYLAVPPLYSIRQGGKVAYARDDAHKDELLRTEFTGRGKVELGRFKGL--GEMMASQL 628

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
            +   +D   +              V     +  +   ++  + +K   R  FI E++E
Sbjct: 629 KE-TTMDPRKRTLLR----------VDVNEIDSATKDRVDELMGTKPEARFRFIQERAE 676



 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 8/190 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++++ +  +   +   +       D ++      V    +    
Sbjct: 497 ILNVASAGNDKLAANQQISDLIQALGCGTRSKYRDEDLRYDRVIIMTDADVDGAHIASLL 556

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F +      +    +      + S+   G            + + +   GR  + + R
Sbjct: 557 ITFFYQEMPALVRGGHLYLAVPPLYSIRQGGKVAYARDDAHKDELLRTEFTGRGKVELGR 616

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA--DDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM ASQL ETT++P  R+LLRV + +   A  D +   LMG + E R  FIQE +
Sbjct: 617 FKGLGEMMASQLKETTMDPRKRTLLRVDVNEIDSATKDRV-DELMGTKPEARFRFIQERA 675

Query: 797 LPSA---LDI 803
             +    LDI
Sbjct: 676 EFAETEVLDI 685


>gi|163740909|ref|ZP_02148302.1| DNA topoisomerase IV subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161385900|gb|EDQ10276.1| DNA topoisomerase IV subunit B [Phaeobacter gallaeciensis 2.10]
          Length = 652

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 238/655 (36%), Positives = 350/655 (53%), Gaps = 22/655 (3%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D++     + +YDA SI++L+GL+ V++RP MYIG TD E  LHHM+ E+LDN++DE+
Sbjct: 1   MADDLLSTPASDTYDASSIEVLEGLEPVRQRPGMYIGGTD-ERALHHMVAEILDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I VTL+ D + T+SDNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGHANRIEVTLHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ +   ++E  F  GI   P+   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGSSVVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKRGTFVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFV 233
                IF    F    L   +R  ++L S V+I    +   +  P E T  + GG++ ++
Sbjct: 180 HADEQIFGSHRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNETPTEATFHFPGGLKDYL 239

Query: 234 SYL-----DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + +         +P        +       ++ A+ W          + N +P  +GGTH
Sbjct: 240 TEVLGKSSVYADQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  +A+ + I +Y E           +  DD   G  +++S  + DP F  QTK++L 
Sbjct: 300 VAGFWAAILKGIKAYGELVGNK--KAGQITRDDLMAGGCALVSCFIADPAFVGQTKDRLS 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +     +VE+ V D    WL      A  I+  ++  +  R   ++ ++ T+RK      
Sbjct: 358 TEIAAKMVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKE-TQRKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +D   +ELF+VEGDSAGGS K  R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 417 RLPGKLTDCTSKDRTGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKI 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++ EI  L  ALG G G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 477 GTNAEIRDLCEALGVGTG-TKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G    Y  DE   + +L      +           G +   D
Sbjct: 536 IDGGHLYLACPPLFRLTQGARRVYCLDEAERDLWLEKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFIDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+    D      I   I +  P      +EQ +           + N     +L
Sbjct: 596 LKETTMDPTTRKLIRVTIDEDEPGETSELVEQLMGKKPELRYQYIQENAKFVEEL 650



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 8/207 (3%)

Query: 605 YPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
                +  + QA++     + N        +   +++ +    +   +   ++      D
Sbjct: 446 SGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEIRDLCEALGVGTGTKFNLDDLRYD 505

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
            ++      V    +      F F      I    +      +  L     ++       
Sbjct: 506 KIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACPPLFRLTQGARRVYCLDEAE 565

Query: 722 LLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLF 777
               +   +G KG I + R+KGLGEM+A  L ETT++P TR L+RV I +    +  +L 
Sbjct: 566 RDLWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPTTRKLIRVTIDEDEPGETSELV 625

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
            +LMG + E R ++IQEN+     LD+
Sbjct: 626 EQLMGKKPELRYQYIQENAKFVEELDV 652


>gi|288958482|ref|YP_003448823.1| topoisomerase IV subunit B [Azospirillum sp. B510]
 gi|288910790|dbj|BAI72279.1| topoisomerase IV subunit B [Azospirillum sp. B510]
          Length = 662

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 247/582 (42%), Positives = 344/582 (59%), Gaps = 21/582 (3%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD  +N+     SY A  I++L+GL+ V++RP MYIG TD    LHH++ EVLDNA+DE
Sbjct: 1   MSDLFENTAPKADSYSAQDIEVLEGLEPVRRRPGMYIGGTDD-RALHHLVAEVLDNAMDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSY 114
           ++ G+A  I + L  DG+  V DNGRGIP D H +  G SA EVIMT LH+GGKF+ K Y
Sbjct: 60  AVAGHASRIDLELAADGTVMVRDNGRGIPIDDHPKYPGKSALEVIMTTLHSGGKFSNKVY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + SGGLHGVG+SVVNALS  L + I RE  ++   +  G+   PL   G+  N  GT + 
Sbjct: 120 QTSGGLHGVGLSVVNALSDRLTVEIAREKQLHVQEYSRGLPQGPLAHRGNV-NRRGTTIR 178

Query: 175 FLPSSDIFSVQDFNYDTLQHRL-RELSFLNSSVQISLIDKRS------PEPREITMFYKG 227
           F    +IF           +RL R  ++L   V+I      S        P   T+ + G
Sbjct: 179 FHADPEIFGETAHFEPHRLYRLARSKAYLYRGVEIRWACDPSLLSVDATTPASETLHFPG 238

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           G++ +++   + +K L  SP             ++ A+ W D        + N +P   G
Sbjct: 239 GLQDYLNAALKDRKTLTPSPFAGALDFPNGQGRVEWAVAWPDDDEGFSHTYCNTVPTPLG 298

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GLR+ALTR + +Y E +   +  +  V  DD       +LS+ + +P F  QTKE
Sbjct: 299 GTHEAGLRTALTRGLKAYGELTSNKRAGQ--VTADDVMGDACVLLSVFIREPHFQGQTKE 356

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLV++E + +VE+ V D    WL   P  A  +++++++ +  R   ++++++T RK   
Sbjct: 357 KLVTAEAQRLVETAVKDHFDHWLSGDPQSANGLLERLIEKAEERARRKQSKEMT-RKSAT 415

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCS   P+ +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILNV  A  
Sbjct: 416 RRLRLPGKLADCSRNSPEGTELFLVEGDSAGGSAKQARQRETQAILPLRGKILNVASASV 475

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DKM ++QE+  L  ALG GIG+D F  +KLRY ++IIMTDADVDGAHI +LL+TFF+R+M
Sbjct: 476 DKMKANQELNDLTQALGCGIGKD-FSTDKLRYERVIIMTDADVDGAHIASLLMTFFYREM 534

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           P LI  G LY+  PPLY ++ G    Y +D+   ++ L    
Sbjct: 535 PGLIQEGHLYLALPPLYRLSHGNKQVYARDDAHKDELLAKMF 576



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 25/188 (13%)

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKY-KRIFSN 695
           K    LN + +          +   +  +R+   +     ++G+ I S    +  R    
Sbjct: 479 KANQELNDLTQALGCGIGKDFSTDKLRYERVI--IMTDADVDGAHIASLLMTFFYREMPG 536

Query: 696 RIEEN-----YLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQRYKGLGEMNA 747
            I+E         +  L     ++          LL  +F  G+K   + R+KGLGEM  
Sbjct: 537 LIQEGHLYLALPPLYRLSHGNKQVYARDDAHKDELLAKMFK-GKK-PDISRFKGLGEMMP 594

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADD---------LFSRLMGDEVEPRREFIQENSLP 798
           +QL +TT++P  RSLLRV + +A+  ++         L   LMG   E R +FIQ+N+  
Sbjct: 595 AQLRDTTMDPSKRSLLRVVVPNAADPEEKPECERTRSLVEDLMGKRPELRFKFIQDNAKF 654

Query: 799 S---ALDI 803
                +D+
Sbjct: 655 VKADDIDV 662


>gi|298291347|ref|YP_003693286.1| DNA topoisomerase IV subunit beta [Starkeya novella DSM 506]
 gi|296927858|gb|ADH88667.1| DNA topoisomerase IV, B subunit [Starkeya novella DSM 506]
          Length = 680

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 237/646 (36%), Positives = 347/646 (53%), Gaps = 18/646 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             + Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN +DE++ G+A  I 
Sbjct: 34  AENGYTAAHIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNCMDEAVAGHASFID 92

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L  DG   V+DNGRGIP + H +  G SA EVI+T LHAGGKF+ K Y+ SGGLHGVG
Sbjct: 93  VELTEDGFLAVTDNGRGIPIEDHPKYPGKSALEVILTTLHAGGKFDSKVYETSGGLHGVG 152

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALS  L++ + R   +Y  ++  G+   P+   G   N  GT V F P + IF  
Sbjct: 153 VSVVNALSDVLEVEVARGQMLYRQTYSRGLPQGPIQEVGRVLNRRGTRVRFHPDAQIFGE 212

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDR 238
              F    +    R  ++L   V+I           S  P +    + GG++ +++    
Sbjct: 213 GARFKPARVFKMARSKAYLFGGVEIRWSCDASLVAGSEIPEKAVFRFPGGLKDYLAADIE 272

Query: 239 HKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
               +       + SR   + S + A+ W       +  + N IP  +GGTH +GLRS L
Sbjct: 273 GHTLVHPDVFAGKTSRPGGHGSAEWAVAWLGDADGAISSYCNTIPTAEGGTHEAGLRSVL 332

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + +  + E++  +K+       DD   G  ++LS+ + +P F  QTKEKL ++E   +V
Sbjct: 333 LKGLRDHAERTGNTKRASIITT-DDVMAGCAAMLSVFVREPEFQGQTKEKLATAEATRIV 391

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ + D    WL  +P +A  ++  V++ +  R   R+ ++   RK  +    LPGKLAD
Sbjct: 392 EAALRDPFDHWLGGNPTQASRLLDWVIERADERLRRRQEKE-ISRKTAVRKLRLPGKLAD 450

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS      SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK+  +Q++  
Sbjct: 451 CSNNSAAGSELFIVEGDSAGGSAKQARERQTQAVLPLRGKILNVASAGRDKLAQNQQLAD 510

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L+ ALG G G   +    LRY ++IIMTDADVDGAHI +LL+TFFFRQMP LI NG L++
Sbjct: 511 LMQALGCGTG-THYREEDLRYERVIIMTDADVDGAHIASLLVTFFFRQMPKLIENGHLFL 569

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI--- 591
             PPLY I++G    Y +DE   ++ L  +               G +    L+      
Sbjct: 570 AVPPLYRISQGAKTLYARDEAHRDELLKKEFSGRGKVEIGRFKGLGEMMPAQLKETTMSR 629

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                +   I++         +E+ + +   +  +      + AS+
Sbjct: 630 KTRTLLRVSIEEAERAATADIVERLMGNKPESRFAFISERAAFASE 675



 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 7/190 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   +LA+ +  +   +   +       + ++      V    +    
Sbjct: 491 ILNVASAGRDKLAQNQQLADLMQALGCGTGTHYREEDLRYERVIIMTDADVDGAHIASLL 550

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F F    K I +  +      +  +      +         + +     GR  + + R
Sbjct: 551 VTFFFRQMPKLIENGHLFLAVPPLYRISQGAKTLYARDEAHRDELLKKEFSGRGKVEIGR 610

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA--DDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM  +QL ETT++  TR+LLRV I +A +A   D+  RLMG++ E R  FI E +
Sbjct: 611 FKGLGEMMPAQLKETTMSRKTRTLLRVSIEEAERAATADIVERLMGNKPESRFAFISERA 670

Query: 797 LPSA---LDI 803
             ++   LDI
Sbjct: 671 AFASEELLDI 680


>gi|269115287|ref|YP_003303050.1| Topoisomerase IV subunit B [Mycoplasma hominis]
 gi|21903715|gb|AAC33841.2| topoisomerase IV subunit [Mycoplasma hominis ATCC 23114]
 gi|268322912|emb|CAX37647.1| Topoisomerase IV subunit B [Mycoplasma hominis ATCC 23114]
          Length = 639

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 253/654 (38%), Positives = 374/654 (57%), Gaps = 26/654 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++Y+A  +++LKGLDAV+KRP MYIG TD  SGLHH+I+E+ DNAIDE+L G+A+ I
Sbjct: 1   MSLNNYEASDLKVLKGLDAVRKRPGMYIGSTDS-SGLHHLIWEIFDNAIDEALSGFANKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  D S  V DNGRGIP + H E G S  E++ T LHAGGKF   +YK SGGLHGVG
Sbjct: 60  IVTLKKDSSVIVEDNGRGIPVNKH-ESGKSGVELVFTELHAGGKFGDGAYKTSGGLHGVG 118

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALSS +++ + R+   Y  +F    +              GT+V F     IF  
Sbjct: 119 SSVVNALSSKVEVTVWRDKKAYFTAFQQDTIIEKTHEISPTTKQ-GTKVQFWADFSIFKK 177

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             ++ + ++ +LRE SFL  ++ I   ++ + E   +T   K GI+ +++++   KK + 
Sbjct: 178 SKYSPEIIKEKLREASFLMPNLTIEFYNENTDE--HVTFKTKDGIKEYINFVGEGKKFIS 235

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +           I IDLA+ + DGY E++  F NN+  +DGGTH + L++ALT+ I  Y 
Sbjct: 236 EIFYASGMCNYGIEIDLALVYTDGYSESIYSFVNNVKTRDGGTHETALKTALTKTINDYA 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
            K+  +   K +  G D REG  +V+S+K+P+    F  QTK+KL + E R VVE FV+ 
Sbjct: 296 SKNGLA--KKITFEGSDVREGIIAVISLKVPEEILEFVGQTKDKLGTPEAREVVEDFVSQ 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP--GKLADCSER 420
               +L E+ +EA+ I+ K+  A   + AAR A++  R+            GKL     +
Sbjct: 354 KFYFFLNENKIEAEKIISKIKKAYEAKVAARNAKNEARKIKNKFENRKILSGKLTPAQSK 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P   ELFLVEGDSAGGSAK GR+R  QAILPLRGK++N ++A+   +L+++EI T+I  
Sbjct: 414 NPAVKELFLVEGDSAGGSAKLGRNRVTQAILPLRGKVINTDKAKLSDVLANEEIATIINT 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G GIG+D F++   +YHKIIIMTDAD DGAHI+TLLLTFF+R M  L+ NG +YI  PP
Sbjct: 474 IGAGIGED-FNLKNAQYHKIIIMTDADTDGAHIQTLLLTFFWRYMKKLVENGMVYIALPP 532

Query: 541 LYGI---TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           LY I   ++     Y  DE+ L++     +  E         G ++ + L          
Sbjct: 533 LYKISIKSKNTQPLYAWDEDQLKEITSKYTNYE--IQRYKGLGEMNADQLW--------- 581

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
           +  +     +  K  +E  ++          +  ++    + N ++F +E   K
Sbjct: 582 ETTMNPETRSIIKVDVEDEILVERNVSTLMSDDVIARKQWINNNVDFSSEDDFK 635



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 97/259 (37%), Gaps = 11/259 (4%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I +    +        E   I         L        SKN     + +   ++    
Sbjct: 372 KIKKAYEAKVAARNAKNEARKIKNKFENRKILSGKLTPAQSKN---PAVKELFLVEGDSA 428

Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                  +  + QA++     V N +  +  +V    ++A  +N I     + ++     
Sbjct: 429 GGSAKLGRNRVTQAILPLRGKVINTDKAKLSDVLANEEIATIINTIGAGIGEDFNLKNAQ 488

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL-ICNGDKIKITG 718
              ++           +      F +    K + +  +      +  + I + +   +  
Sbjct: 489 YHKIIIMTDADTDGAHIQTLLLTFFWRYMKKLVENGMVYIALPPLYKISIKSKNTQPLYA 548

Query: 719 PCSLLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                D +  I  K     +QRYKGLGEMNA QLWETT+NP+TRS+++V + D    +  
Sbjct: 549 WDE--DQLKEITSKYTNYEIQRYKGLGEMNADQLWETTMNPETRSIIKVDVEDEILVERN 606

Query: 777 FSRLMGDEVEPRREFIQEN 795
            S LM D+V  R+++I  N
Sbjct: 607 VSTLMSDDVIARKQWINNN 625


>gi|254720422|ref|ZP_05182233.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13]
 gi|265985441|ref|ZP_06098176.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13]
 gi|264664033|gb|EEZ34294.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13]
          Length = 699

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/564 (41%), Positives = 336/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 58  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 116

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 117 VDKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 176

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 177 VVNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNA 236

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 237 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPGKAVFHFPGGLKDYLEASLGK 296

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 297 EHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 355

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 356 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVE 413

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 414 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 472

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 473 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 532

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 533 VQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 591

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 592 VPPLYRLSQGGKTAYARDDAHKEE 615



 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 512 ILNVASAGREKLTANQQIADLVQALGCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 571

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L   G             LL T+F+ GR  I + 
Sbjct: 572 ITFFYQEMPELIRNGHLYLAVPPLYRLSQGGKTAYARDDAHKEELLRTVFT-GRGKIEIG 630

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 631 RFKGLGEMRADQLKETTMDPAKRTLLRVQVDEEYGDETRNTVDDLMGTKPEARFRFIQDR 690

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 691 AAFVEELDI 699


>gi|98990338|gb|ABF60237.1| DNA gyrase subunit B [Entomoplasma freundtii]
          Length = 608

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 247/533 (46%), Positives = 344/533 (64%), Gaps = 6/533 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T    GLHH+++E+LDN+IDE++ GYA+ I VT+  DG   V DNGRGIP  +  + G
Sbjct: 1   GSTSKA-GLHHLVWEILDNSIDEAMAGYANRIVVTITKDGEVVVEDNGRGIPVGVQHDTG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + +KREG +Y   F +
Sbjct: 60  RSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSEYVDVLVKREGKVYHQVFSH 119

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLI 211
           G      +      N+TGT V F P   IF     F+Y T+++++++L++LN  ++I+LI
Sbjct: 120 GGTKQSALEVIDTTNETGTVVRFKPDPTIFQETVIFDYITIKNKVKQLAYLNKGIEITLI 179

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D R  +          GI  +V   + +K+P+  +   + G  D + +++A+++N  Y++
Sbjct: 180 DYRIDKTITYHF--PNGILDYVREENANKQPINPNIFYVDGKYDGVEVEVALQYNADYND 237

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG-DDCREGFTSVL 330
           N++ F NNI   +GGTH  G+R AL R I  Y EK   +        G DD +EG   +L
Sbjct: 238 NLITFVNNINTHEGGTHEDGIRQALVRTINRYAEKVAKNGAKSAQKFGWDDIKEGMIGIL 297

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SI+  DP F  QTK KL +   +  V++ V D    +L + PL+AK I+ K   A   R 
Sbjct: 298 SIRHSDPSFEGQTKTKLSNLNAKKAVDNVVGDAFEEFLMKSPLDAKAILDKNSTAQKARL 357

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRKG LD  SLPGKLADC  +DP  +EL+LVEGDSAGGSAK GR+R  QAI
Sbjct: 358 AAQRAREETRRKGALDTFSLPGKLADCETKDPTIAELYLVEGDSAGGSAKTGRNRFFQAI 417

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK+LNVE+ +  +  S+ EI +++TA+G GI +D     KLRY+KI+IMTDADVDG
Sbjct: 418 LPLRGKVLNVEKVQEARAFSNNEIKSIVTAVGCGIKEDVNVC-KLRYNKIVIMTDADVDG 476

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           AHIRTLLLTFF+R M  L+ +G +YI +PPLY I  GK + Y   ++ LED+ 
Sbjct: 477 AHIRTLLLTFFYRYMKDLVRHGHIYIAQPPLYKIEAGKKVAYAYSDQQLEDFK 529



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 55/70 (78%), Gaps = 1/70 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
            ++QRYKGLGEM+  QLWETT+NP+ R++L+V + DA+ A+++FS LMG++ E RR+FIQ
Sbjct: 538 YTIQRYKGLGEMDPLQLWETTMNPEFRTMLQVTLEDAAIANEVFSNLMGEDPELRRDFIQ 597

Query: 794 ENSLPS-ALD 802
           EN+     +D
Sbjct: 598 ENASFVENID 607


>gi|148558666|ref|YP_001257579.1| DNA topoisomerase IV subunit B [Brucella ovis ATCC 25840]
 gi|189022806|ref|YP_001932547.1| DNA topoisomerase IV subunit B [Brucella abortus S19]
 gi|148369951|gb|ABQ62823.1| DNA topoisomerase IV, B subunit [Brucella ovis ATCC 25840]
 gi|189021380|gb|ACD74101.1| DNA topoisomerase IV subunit B [Brucella abortus S19]
 gi|326410748|gb|ADZ67812.1| DNA topoisomerase IV subunit B [Brucella melitensis M28]
 gi|326554041|gb|ADZ88680.1| DNA topoisomerase IV subunit B [Brucella melitensis M5-90]
          Length = 680

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/564 (41%), Positives = 336/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 39  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 97

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 98  VDKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 157

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 158 VVNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNA 217

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 218 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 277

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 278 EHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 336

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 337 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVE 394

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 395 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 453

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 454 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 513

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 514 VQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 572

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 573 VPPLYRLSQGGKTAYARDDAHKEE 596



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 493 ILNVASAGREKLTANQQIADLVQALGCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 552

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L   G             LL T+F+ GR  I + 
Sbjct: 553 ITFFYQEMPELIRNGHLYLAVPPLYRLSQGGKTAYARDDAHKEELLRTVFT-GRGKIEIG 611

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 612 RFKGLGEMRADQLKETTMDPAKRTLLRVQVDEEYGDETRNTVDDLMGTKPEARFRFIQDR 671

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 672 AAFVEELDI 680


>gi|110004707|emb|CAK99042.1| dna topoisomerase iv subunit b protein [Spiroplasma citri]
          Length = 645

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 248/598 (41%), Positives = 366/598 (61%), Gaps = 12/598 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   +   YD  SIQIL+GLDAV+KRP MYIG TD   GLHH+++E++DN+IDE+L GY
Sbjct: 1   MSIEDKTLKYDESSIQILEGLDAVRKRPGMYIGSTD-VRGLHHLVWEIIDNSIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I + +  + +  V+DNGRG+PT +H   G S  EVI + LHAGGKF    YK +GGL
Sbjct: 60  CNEIDIIIYKNNAIMVADNGRGVPTGVHSS-GKSTPEVIFSVLHAGGKFGGDGYKTAGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS+   + I R+  ++ + F NG      +        TGT VTFLP   
Sbjct: 119 HGVGSSVVNALSATFDVTIYRDHKVWSIKFANGGQVKEPLTKIGTTTKTGTTVTFLPDHK 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF V DF++ T+  R+RE +FLNS V+++L D+R+ +          G+E F++Y++  K
Sbjct: 179 IFKVIDFSFSTISERIRESAFLNSGVKLTLTDQRTDKKVSYLF--NNGLEEFITYMNEDK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           K +    I ++G    I +++A++++  ++EN+L F NN+   +GG+H+ G R+ LT+ I
Sbjct: 237 KSITP-IIMLKGVEKQIEVEIALQYSTEFNENLLSFANNVKTSEGGSHVVGFRTGLTKVI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             Y  K    K+  +++   D REG T+++S+K+P+   ++  QTK KL + E R  VE+
Sbjct: 296 NDYARKEGLLKEKDKNLDSVDTREGLTTIVSVKIPENLIQYEGQTKGKLGTYEARVAVET 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLAD 416
            V+     WL E+   A  I++K L A  VR+ AR+AR+     +K       L GKL  
Sbjct: 356 IVSKQFGFWLTENKTNAYTIIEKALLARNVREEARKAREAARNSKKRGNSDRLLTGKLTP 415

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              R+   +E+FLVEGDSAGGSAK GR R  QAILPLRGK++N E+A+   +++++EI  
Sbjct: 416 AQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEKAKLQDLMNNEEINV 475

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           +I A+G G+G   FDIN   Y K+IIMTDAD DGAHI+TLLLTFF+R M  LI N  +Y+
Sbjct: 476 MINAIGAGVGNG-FDINDANYGKVIIMTDADTDGAHIQTLLLTFFYRYMRPLIENHRVYL 534

Query: 537 IKPPLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
             PPL+ I  T+ K ++Y  DE  L++ L       E++ +     + ++      ++
Sbjct: 535 ALPPLFKITSTKNKHIEYAWDETELKNKLSQFHGKFELQRYKGLGEMNAEQLWETTMN 592



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 5/178 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +N I       +  +  N   ++           +    
Sbjct: 456 VINAEKAKLQDLMNNEEINVMINAIGAGVGNGFDINDANYGKVIIMTDADTDGAHIQTLL 515

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSI-GRKGISMQ 737
             F +      I ++R+      +  +    +K          L + +    G+    +Q
Sbjct: 516 LTFFYRYMRPLIENHRVYLALPPLFKITSTKNKHIEYAWDETELKNKLSQFHGK--FELQ 573

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP TR L+ V I DA  A+     LMGD+ + R+ +I EN
Sbjct: 574 RYKGLGEMNAEQLWETTMNPQTRQLILVTIDDAVMAERRIVTLMGDDAKKRKYWIDEN 631


>gi|291531944|emb|CBK97529.1| DNA gyrase subunit B [Eubacterium siraeum 70/3]
          Length = 692

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 275/609 (45%), Positives = 379/609 (62%), Gaps = 26/609 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +     +Y AD IQIL+GL+AV+KRP MYIG T GESGLHH++YE++DNAIDE+L GY  
Sbjct: 36  NTQVEHAYGADDIQILEGLEAVRKRPGMYIGST-GESGLHHLVYEIVDNAIDEALAGYCT 94

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V +       V+DNGRGIPT +H +E ISAA V+ T LHAGGKF    YKVSGGLHG
Sbjct: 95  EINVKILPGDVIEVTDNGRGIPTGIHPKEKISAATVVYTILHAGGKFGGGGYKVSGGLHG 154

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           VG SVVNALS WL+L +     I+   F N G     + V G   + TGT+V F P S I
Sbjct: 155 VGASVVNALSEWLELTVYDGKEIHFQRFENGGHYKEQMKVIG-TTDKTGTQVRFKPDSTI 213

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSY--LDR 238
           F   +F YD L  RLRE +FLN+ ++I L D +   +P++  + Y+GGI ++V +    R
Sbjct: 214 FHSTEFKYDILLDRLREQAFLNAGLKIVLSDLRDEDKPKQEVLQYEGGIISYVEWLQKKR 273

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALT 297
             + L    + I+G  DNIS+++A ++N  ++ E    F NNI   DGGTH    ++AL 
Sbjct: 274 GAEALHPDVVYIEGLLDNISVEIAFQYNTDFNSETFRSFANNIHTVDGGTHEIAFKNALN 333

Query: 298 RQITSYVEKSFGSK--------------KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           + I  +V++    +              K+   + G+  RE   +V+S+K+P+  F  QT
Sbjct: 334 KVINDFVKQYKEQQANNNKKSKKKQDEVKEFVPLSGEAIREAINAVISVKLPECEFEGQT 393

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL + EVR VV     + L+ + EEHP     I +K ++A   RDAA++A    +RK 
Sbjct: 394 KGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATIAQKCINAQAARDAAKKA-MEAKRKS 452

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           V D ASLPGKLADCS+ DP+K+E+++VEGDSAGGSAKQGR R  QAILPL GK+LNVE+A
Sbjct: 453 VTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSAKQGRDRRFQAILPLWGKMLNVEKA 512

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R DK+ ++ ++  ++ ALGTGIG+D FDI KLRY ++++M DADVDG+HIRTLLLTFFFR
Sbjct: 513 RADKVYNNDKLQPVVKALGTGIGED-FDITKLRYGRVVVMADADVDGSHIRTLLLTFFFR 571

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE---LFCDSKG 580
            M  LI  G +Y+ +PPL+ + RGK ++Y   +E  + Y+   +     +         G
Sbjct: 572 FMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEERDAYIAELAGESNAKVDVQRYKGLG 631

Query: 581 VISKNDLRN 589
            +    L  
Sbjct: 632 EMDPEQLWE 640



 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 130/326 (39%), Gaps = 34/326 (10%)

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLY------IIKPPLYGITRGKSLQYVKDEESLEDYL 563
           G  IR  +      ++P     G          ++P +Y IT  K   Y ++       +
Sbjct: 369 GEAIREAINAVISVKLPECEFEGQTKGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATI 428

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
             + ++ +       K + +K                  D  P   + +I +   +G   
Sbjct: 429 AQKCINAQAARDAAKKAMEAKRKSVTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSA 488

Query: 624 CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL------ 677
            +       ++       LN    +++K ++   +    +VK +  G+ E F +      
Sbjct: 489 KQGRDRRFQAILPLWGKMLNVEKARADKVYN--NDKLQPVVKALGTGIGEDFDITKLRYG 546

Query: 678 ------EGSSIFSFGSKYK-----RIFSNRIEEN----YLTILSLICNGDKIKITGPCSL 722
                 +     S           R     IEE         L  +  G K++       
Sbjct: 547 RVVVMADADVDGSHIRTLLLTFFFRFMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEE 606

Query: 723 LDTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            D   +         + +QRYKGLGEM+  QLWETT++P  R++++V + DA++AD++FS
Sbjct: 607 RDAYIAELAGESNAKVDVQRYKGLGEMDPEQLWETTMDPAARTMIKVNLEDAAKADEIFS 666

Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803
            LMGD+VEPRREFI++N+  +  LDI
Sbjct: 667 ILMGDKVEPRREFIEQNARYAKDLDI 692


>gi|23500335|ref|NP_699775.1| DNA topoisomerase IV subunit B [Brucella suis 1330]
 gi|23463950|gb|AAN33780.1| DNA topoisomerase IV, B subunit [Brucella suis 1330]
          Length = 699

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/564 (41%), Positives = 336/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 58  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 116

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 117 VDKEGFVTVSDNGRGIPVDKHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 176

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 177 VVNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNA 236

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 237 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 296

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 297 EHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 355

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 356 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVE 413

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 414 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 472

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 473 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 532

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 533 VQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 591

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 592 VPPLYRLSQGGKTAYARDDAHKEE 615



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 512 ILNVASAGREKLTANQQIADLVQALGCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 571

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L   G             LL T+F+ GR  I + 
Sbjct: 572 ITFFYQEMPELIRNGHLYLAVPPLYRLSQGGKTAYARDDAHKEELLRTVFT-GRGKIEIG 630

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 631 RFKGLGEMRADQLKETTMDPAKRTLLRVQVDEEYGDETRNTVDDLMGTKPEARFRFIQDR 690

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 691 AAFVEELDI 699


>gi|89054416|ref|YP_509867.1| DNA topoisomerase IV subunit B [Jannaschia sp. CCS1]
 gi|88863965|gb|ABD54842.1| DNA topoisomerase IV subunit B [Jannaschia sp. CCS1]
          Length = 653

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/578 (40%), Positives = 331/578 (57%), Gaps = 18/578 (3%)

Query: 1   MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D++      + SYDA SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE
Sbjct: 1   MADDLLSGAPDDQSYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSY 114
           ++ GYA  I V L+ D + T+ DNGRG+P D H +  G SA EVI+  LHAGGKF+ K+Y
Sbjct: 60  AVAGYATRIEVELHADHAVTIRDNGRGMPFDPHPKFPGKSALEVILCTLHAGGKFSGKAY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + SGGLHGVG SVVNALS  + +++ R+  + E  F  G+   P+   G+A N  GT  T
Sbjct: 120 QTSGGLHGVGASVVNALSDSMVVQVARDRKVVEQRFSRGLPLGPVTEIGAAPNRRGTTTT 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAF 232
           F     IF    F    L   ++  ++L S V+I           P E T  + GG+  +
Sbjct: 180 FHADEQIFGSHRFKPARLMKMVQSKAYLFSGVEIRWKSAIDDGETPTEATFHFPGGLSDY 239

Query: 233 VSYLDRHKKPLMQSPIRIQGS-----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           ++          + P   +           S++ A+ W       +  F N +P  +GGT
Sbjct: 240 LTETLGKTATYTEIPFAGKVEFQQRFNVPGSVEWAISWTPARDGFIQSFCNTVPTPEGGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G  +A+ + I +Y E +   K    ++  DD   G  +++S  + +P F  QTK++L
Sbjct: 300 HEAGFWAAILKGIRAYGELAGNKKAA--NITRDDIATGAGALVSCFIAEPEFVGQTKDRL 357

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E + +VE  V D    WL ++  EA  I+  ++  +  R   R  ++ T RK     
Sbjct: 358 ATTEAQRLVEQAVRDHFDNWLGQNTKEAGAILDFLVLRAEERLRRRAEKE-TARKSATKK 416

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKL DCS+     +ELF+VEGDSAGGSAK  R+R+NQA+LPLRGKILNV  A   K
Sbjct: 417 LRLPGKLVDCSQSARDGTELFIVEGDSAGGSAKMARNRKNQALLPLRGKILNVLGAASGK 476

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           + S+ EI  L  ALG G+G   F+I  LRY KIIIMTDADVDGAHI  LL+TFFF QM  
Sbjct: 477 LTSNAEISDLCQALGVGMG-TKFNIEDLRYDKIIIMTDADVDGAHIAALLMTFFFSQMRP 535

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           +I  G LY+  PPL+ +T+G    Y  DE+  ++ +  
Sbjct: 536 MIDGGHLYLACPPLFRLTQGARRVYCLDEQERDEMMEK 573



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++      D ++      V    +      F F      I    +      +  L     
Sbjct: 498 FNIEDLRYDKIIIMTDADVDGAHIAALLMTFFFSQMRPMIDGGHLYLACPPLFRLTQGAR 557

Query: 713 KIKITGPCSLLDTIFS--IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           ++         D +    +G KG I + R+KGLGEM+A  L ETT++P++R L+RV + D
Sbjct: 558 RVYCLDEQER-DEMMEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPESRKLIRVSVDD 616

Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
               +  DL  RLMG + E R ++IQEN+     LD+
Sbjct: 617 DVPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 653


>gi|254465080|ref|ZP_05078491.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium Y4I]
 gi|206685988|gb|EDZ46470.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium Y4I]
          Length = 652

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 238/655 (36%), Positives = 352/655 (53%), Gaps = 22/655 (3%)

Query: 1   MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D++ ++    +YDA SI++L+GL+ V++RP MYIG TD E  LHHM+ E+LDN++DE+
Sbjct: 1   MADDLLSTPAADTYDASSIEVLEGLEPVRQRPGMYIGGTD-ERALHHMVAEILDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I VTL+ D S T+SDNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGHANRIEVTLHADYSVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ +   ++E  F  G+   P+   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGSSVVNALSDSMVVQVAKNKELFEQRFSRGLPLGPVEKIGAAPNKRGTFVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFV 233
                IF    F    L   +R  ++L S V+I    +      P E T  + GG++ ++
Sbjct: 180 HADEQIFGSHRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDGETPTEATFHFPGGLKDYL 239

Query: 234 SYL-----DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + +         +P        +       ++ A+ W          + N +P  +GGTH
Sbjct: 240 TEVLGKSSVYADQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  +A+ + I +Y E          ++  DD   G  +++S  + DP F  QTK++L 
Sbjct: 300 VAGFWAAILKGIKAYGELVNNK--KAGNITRDDLMAGGCALVSCFIADPAFVGQTKDRLS 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +     +VE+ V D    WL      A  I+  ++  +  R   ++ ++ T+RK      
Sbjct: 358 TESAAKMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRKQEKE-TQRKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +D   +ELF+VEGDSAGGS K  R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 417 RLPGKLTDCTSKDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+ EI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 477 GSNAEINDLCEALGVGLGSK-FNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G    Y  DE   + +L      +           G +   D
Sbjct: 536 IDGGHLYLACPPLFRLTQGAKRVYCLDEAERDKWLEKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFIDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+    D      I   I +  P      +E+ +           + N     +L
Sbjct: 596 LKETTMDPATRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENARFVEEL 650



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I    +      +  L     ++     
Sbjct: 504 YDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACPPLFRLTQGAKRVYCLDE 563

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I + R+KGLGEM+A  L ETT++P TR L+RV I +    +  D
Sbjct: 564 AERDKWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPATRKLIRVTIDEDEPGETGD 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++IQEN+     LD+
Sbjct: 624 LVERLMGKKPELRFQYIQENARFVEELDV 652


>gi|226312850|ref|YP_002772744.1| DNA topoisomerase IV subunit B [Brevibacillus brevis NBRC 100599]
 gi|226095798|dbj|BAH44240.1| DNA topoisomerase IV subunit B [Brevibacillus brevis NBRC 100599]
          Length = 656

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 257/663 (38%), Positives = 379/663 (57%), Gaps = 24/663 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++  Q  +Y  + IQ+L+GL AV+KRP MYIG T G  GLHH+++E++DNA DE+L G  
Sbjct: 4   TETQQTLTYTEEDIQVLEGLIAVRKRPGMYIGST-GSRGLHHLLWEIVDNAKDEALAGVN 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I VTL  DGS +V D+GRGIPT +H + G    EVI T LHAGGKF    YK SGGLH
Sbjct: 63  DSIIVTLYKDGSVSVEDHGRGIPTGMH-KTGRPVPEVIFTTLHAGGKFGGGGYKKSGGLH 121

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGT 171
           GVG SVV ALS WL++ I REG I++  F            G     L +TG+    TGT
Sbjct: 122 GVGSSVVVALSKWLEVEIHREGKIHKQRFEYVVDANGTEHVGKPVTGLEITGNTK-RTGT 180

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            V FLP   +F    F+Y+T++ R RE +FL   +++ LID+R PE +    +++ G+++
Sbjct: 181 TVRFLPDDAVFGNARFDYETIRDRFRETAFLLKKLRMVLIDERGPEKKREEFYFEDGLKS 240

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           +VSYL+  K  L    +  +G +DNI ++LA ++NDGY E ++ + N+I   DGGTH++G
Sbjct: 241 YVSYLNEGKNSLHP-IVYFEGEKDNIYVELAFQYNDGYAETLVSYVNSIVTTDGGTHVTG 299

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+  TR    +  K    K+   ++ G+D REGF  VLS++M D +F SQTK+KL + E
Sbjct: 300 FRNGTTRIFNEFARKKGYLKEKDPNLTGNDLREGFLGVLSLQMADVQFESQTKDKLGNEE 359

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD----LTRRKGVLDI 407
            R++VE  V++ L  +LEE+P   K+++ K + ++ +R+  R+ R+      + K     
Sbjct: 360 ARAIVEQIVSEKLGFFLEENPEIGKLLIDKAVRSAEIREELRKQREALRGDKKGKTAKKR 419

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            S+  K      RD K++ELFLVEGDSAGGSAKQ R+ E QA+  LRGK LN E+A+  +
Sbjct: 420 KSISEKFTPPQYRDSKRNELFLVEGDSAGGSAKQARNSEFQALFSLRGKPLNTEKAKLSE 479

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +L+++E  T++  L T IG++ F I    + K+IIM+DADVDG+HI+TLLLTFFFR M  
Sbjct: 480 VLANEEFRTILEVLETDIGEE-FSIENCAFDKVIIMSDADVDGSHIQTLLLTFFFRYMRP 538

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LYI +PPLY + +    +  +      DY + Q     ++       V     L
Sbjct: 539 MIAAGHLYIAQPPLYQVKKQSKGKQTEAIYCWSDYELEQ----ALKKVGRGAEVQRYKGL 594

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
              ++     +  +        K  +E              +        + N + F   
Sbjct: 595 GE-MNADQLWETTMDPETRKLIKVELEDLAHCEKLVTVLMGDKVPPRREWIENHVTFEVG 653

Query: 648 KSE 650
           + E
Sbjct: 654 EDE 656



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 6/180 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
             N E  +   V    +    L  +     + +       D ++      V    +    
Sbjct: 469 PLNTEKAKLSEVLANEEFRTILEVLETDIGEEFSIENCAFDKVIIMSDADVDGSHIQTLL 528

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIK---ITGPCSLLDTIFSIGRKGIS 735
             F F      I +  +      +  +     G + +         L   +  +GR G  
Sbjct: 529 LTFFFRYMRPMIAAGHLYIAQPPLYQVKKQSKGKQTEAIYCWSDYELEQALKKVGR-GAE 587

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA QLWETT++P+TR L++V++ D +  + L + LMGD+V PRRE+I+ +
Sbjct: 588 VQRYKGLGEMNADQLWETTMDPETRKLIKVELEDLAHCEKLVTVLMGDKVPPRREWIENH 647


>gi|126730950|ref|ZP_01746759.1| DNA topoisomerase IV subunit B [Sagittula stellata E-37]
 gi|126708666|gb|EBA07723.1| DNA topoisomerase IV subunit B [Sagittula stellata E-37]
          Length = 652

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/573 (39%), Positives = 325/573 (56%), Gaps = 17/573 (2%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D++       +YDA SI++L+GL+ V+KRP MYIG TD E  LHHM+ E+LDN++DE+
Sbjct: 1   MADDLLHTAVEPTYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHMVAEILDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I VTL  D +  + DNGRGIP D H +  G SA EVI+  LHAGGKF+  +Y+
Sbjct: 60  VAGHANRIEVTLRADHAIEIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGDAYE 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ +   +YE  F  GI   P+   G+A N  GT  TF
Sbjct: 120 TSGGLHGVGASVVNALSDSMVVQVAKNKELYEQRFSRGIPLGPVEKVGAAPNRRGTTTTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--TMFYKGGIEAFV 233
               DIF    F    L   +R  ++L S V+I    +   +      T  + GG+  ++
Sbjct: 180 HADEDIFGHHRFKPARLFKMVRSKAYLFSGVEIRWKSEIDDKETPTEATFHFPGGLSDYL 239

Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +           +P        +  +    ++ A+ W       +  + N +P  +GGTH
Sbjct: 240 TETLGTASTYADAPFGGVVDFRERFQVPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G  +A+ + I +Y E          ++  DD   G  +++S  + +P F  QTK++L 
Sbjct: 300 EAGFWAAILKGIRAYGELVNNK--KASNITRDDLMTGGCALVSCFIREPEFVGQTKDRLA 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E + +VE+ V D    WL      A  I+  ++         RR    T RK      
Sbjct: 358 TTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLR-AEERLRRRQEKETARKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +  + +E+F+VEGDSAGGSAK  RSRE QA+LPL+GKILNV  A  +K+
Sbjct: 417 RLPGKLTDCTAKSREGTEIFIVEGDSAGGSAKGARSRETQALLPLKGKILNVLGAASNKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+ EI  L  ALG  +G   F+I+ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 477 TSNAEIRDLCEALGVSLG-TKFNIDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           I  G LY+  PPLY +T+G    YV D+ + E+
Sbjct: 536 IDQGHLYLACPPLYRLTQGAKRLYVADDAAKEE 568



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 5/188 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N        ++  +++ +    +       ++      + ++      V    +    
Sbjct: 465 ILNVLGAASNKLTSNAEIRDLCEALGVSLGTKFNIDDLRYEKIIIMTDADVDGAHIASLL 524

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKG-ISMQR 738
             F F      I    +      +  L     ++ +    +  + +   +G KG I +QR
Sbjct: 525 MTFFFTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEEALAKGLGGKGKIDVQR 584

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM+A  L ETT++P+TR+L+RV I +    +  DL  RLMG + E R ++IQEN+
Sbjct: 585 FKGLGEMDAKDLKETTMDPNTRTLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENA 644

Query: 797 L-PSALDI 803
                LD+
Sbjct: 645 RFAVELDV 652


>gi|209964673|ref|YP_002297588.1| DNA topoisomerase IV subunit B [Rhodospirillum centenum SW]
 gi|209958139|gb|ACI98775.1| DNA topoisomerase IV, B subunit, putative [Rhodospirillum centenum
           SW]
          Length = 663

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 237/578 (41%), Positives = 337/578 (58%), Gaps = 20/578 (3%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M+D  QN+     +Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EVLDNA+DE
Sbjct: 1   MTDLFQNTARKQDTYSAQDIEVLEGLEPVRRRPGMYIGGTD-ERALHHLAAEVLDNAMDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSY 114
           ++ G+A  I + L  DG+ TV DNGRGIP D H    G SA EVI+T LH+GGKF+ K Y
Sbjct: 60  AVAGHATRIDMELTADGTVTVRDNGRGIPVDEHPRYPGKSALEVILTTLHSGGKFSGKVY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
             SGGLHGVG +VVNALS  L++ + R+  ++   +  G+   PL   G   N  GT V+
Sbjct: 120 ATSGGLHGVGSAVVNALSDRLRVEVARDRQLWTQEYCRGVPLGPLTNVGPVHNRRGTVVS 179

Query: 175 FLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKG 227
           F P   IF     F  + L    R  ++L   V+I               P   T  +  
Sbjct: 180 FHPDPLIFGDGAVFKPERLYRMCRSKAYLYRGVEIRWSCDPALLPADGSVPAAETQHFPN 239

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           G+  +++   R +  +       Q     +   ++ A+ W +        + N IP   G
Sbjct: 240 GLLDYLTGTLRQRATVTPQAFAGQAEFPNEAGRVEWAIAWPEDDEGFSHTYCNTIPTPLG 299

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  GLR+ALTR +  Y E     +     V  DD  +G   +LS+ + DP+F  QTKE
Sbjct: 300 GTHEQGLRAALTRALKGYGELVGNKRAA--GVTADDVMDGAMVLLSVFVRDPQFQGQTKE 357

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           +LVS E + + ++ + D    WL   P  AK +++++++ +  R A +RA+    RK   
Sbjct: 358 RLVSPEAQRLTDATIKDHFDHWLSAAPDAAKALLERLIEKAEER-ARKRAQKEMARKSPT 416

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCS +  + +E+F+VEGDSAGGSAKQ R+RE QAILPLRGKILNV  A  
Sbjct: 417 RRLRLPGKLADCSRQSAENTEIFIVEGDSAGGSAKQARNREIQAILPLRGKILNVASASV 476

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK+  +QE+  L  ALG G G++ F ++KLRY ++IIMTDADVDGAHI +LL+TFF+R+M
Sbjct: 477 DKLRGNQELADLAQALGCGTGKE-FSLDKLRYERVIIMTDADVDGAHIASLLMTFFYREM 535

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           P LI  G LY+  PPLY ++ G +++Y +D+   ++ +
Sbjct: 536 PGLIQAGHLYLALPPLYRLSGGNTVRYARDDAHKDELM 573



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT---------DAS 771
            L+ T+F   R  + + R+KGLGEM  SQL ETT++P  R+LLRV +          DA 
Sbjct: 571 ELMKTVFRTVRGKVEISRFKGLGEMPPSQLKETTMDPAKRTLLRVVVPDLRDPEQKVDAE 630

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +   L   LMG + E R +FI EN+  +  LD+
Sbjct: 631 ETRSLVESLMGRKPELRFKFITENARFAQDLDV 663


>gi|167463189|ref|ZP_02328278.1| DNA topoisomerase IV subunit B [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381894|ref|ZP_08055848.1| DNA topoisomerase IV subunit B-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154282|gb|EFX46604.1| DNA topoisomerase IV subunit B-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 657

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 257/612 (41%), Positives = 381/612 (62%), Gaps = 24/612 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
               +S YDAD+IQ+L+GL AV+KRP MYIG T   SGLHH+++E++DNA+DE L  +  
Sbjct: 11  QTTLSSDYDADAIQVLEGLTAVRKRPGMYIGSTSS-SGLHHLVWEIVDNAVDEHLAKHCS 69

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT++ +GS TV DNGRGIPT +H + GI   +V+ T LHAGGKF    YK SGGLHG
Sbjct: 70  KIDVTIHKEGSITVYDNGRGIPTGMH-KMGIPTPQVVFTILHAGGKFGGGGYKKSGGLHG 128

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGTE 172
           VG SV NALS WL++ I R+G IY+  F            G     L + G     +GT+
Sbjct: 129 VGASVTNALSEWLEVEIFRDGQIYKQRFEYWVDEAGKEHVGEPVTSLEIIGKTS-KSGTK 187

Query: 173 VTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           +TF P   +F     FNYDTL  RL+EL+FLNS ++I L D+R+         Y GG   
Sbjct: 188 ITFKPDVRVFKGGIQFNYDTLAERLQELAFLNSGLEIFLKDERTGSE--DHFLYSGGASE 245

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+  K  L    I  +  +D+I +++AM++N GY E ++ F N+IP + GGTH +G
Sbjct: 246 FVRFLNEGKDVLH-DVIHFEAEKDDIEVEIAMQYNIGYTETLVSFVNSIPTRGGGTHETG 304

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++A TR +  Y  K+   K+  +++ G D REG  +V++IKM D  F  QTK++L S+ 
Sbjct: 305 FKTAFTRVMNEYARKNSILKEKDKNLEGTDLREGLMAVINIKMSDVEFVGQTKDQLGSAT 364

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIAS 409
            RS V++ V++ ++ +LEE+P  A++++KK + ++  R+AAR+AR+  R  +KG  + ++
Sbjct: 365 ARSAVDAVVSEKMAVFLEENPQVAQMMLKKAVQSAKAREAARKAREEVRSGKKGRSESSN 424

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           L GKL     +D  ++ELF+VEGDSAGGSAKQGR  + QAILPL+GK +N E+A+   +L
Sbjct: 425 LNGKLTPAQSKDVTRNELFIVEGDSAGGSAKQGRDSKYQAILPLKGKPMNPEKAKLLDIL 484

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            + E   +I+A+G G+G + F++++  Y+KIIIMTDAD DGAHI+ LLLTFF+R M  L+
Sbjct: 485 KNDEYKAIISAIGAGVGSE-FELSETNYNKIIIMTDADTDGAHIQVLLLTFFYRYMKPLV 543

Query: 530 HNGFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
             G +YI +PPLY I+    +  S+ Y   +E L         + E++ +     +  + 
Sbjct: 544 DAGKVYIAQPPLYKISKKSGKRTSVHYAWTDEELSKLTQKAGKNFELQRYKGLGEMNPEQ 603

Query: 586 DLRNFIDDALKI 597
                ++   +I
Sbjct: 604 LWETTMNPGTRI 615



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 5/120 (4%)

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735
            + +F  +Y +   +  +              +G +  +        L  +     K   
Sbjct: 530 LLLTFFYRYMKPLVDAGKVYIAQPPLYKISKKSGKRTSVHYAWTDEELSKLTQKAGKNFE 589

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  QLWETT+NP TR LL+V+I DA++A+   S LMGD+V+PR+ +I +N
Sbjct: 590 LQRYKGLGEMNPEQLWETTMNPGTRILLQVQIEDAAKAERRVSTLMGDKVDPRKRWIIDN 649


>gi|98990342|gb|ABF60240.1| DNA gyrase subunit B [Entomoplasma ellychniae]
          Length = 553

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/540 (45%), Positives = 351/540 (65%), Gaps = 7/540 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T   SGLHH+++E+LDN+IDE++ G+AD IT+TL  DG   V DNGRGIP  + ++ G
Sbjct: 1   GSTSK-SGLHHLVWEILDNSIDEAMAGFADKITLTLTKDGEVIVEDNGRGIPVGVQQDSG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI- 151
            SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + +KREG I++  F  
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHKQIFSV 119

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISL 210
            G +   + + G     TGT+V F P  +IF+   D++Y+T+++++++LS+LN  + I  
Sbjct: 120 GGTVQTEIEIIGET-VQTGTKVRFKPDPEIFTEVIDYDYETVRNKVKQLSYLNKGLVIQF 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D+R     E       GI  +V   +  K+ +  S   I G   +I +++A+++N  Y 
Sbjct: 179 NDERIDRSIEYHF--PNGILDYVKEKNETKQKINPSVYYIDGKYGDIEVEVALQYNAEYQ 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+++ F NNI   +GGTH  GLR AL R +  Y EK     K       DD +EG   ++
Sbjct: 237 ESLITFVNNINTHEGGTHEDGLRQALVRVLNRYAEKVAIGNKQAAKYSWDDIKEGMVCIV 296

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SI+  DP++  QTK KL + + +  V+  V D    +L + P +AK I+ K  +A   R 
Sbjct: 297 SIRHTDPQYEGQTKTKLANPDAKKAVDVVVGDSFEEFLLKSPEDAKAILDKNANAQKARI 356

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  LD  SLPGKLADC  +DP  +EL+LVEGDSAGGSAK GR+R+ QAI
Sbjct: 357 AAQRAREETRRKSALDTFSLPGKLADCESKDPSIAELYLVEGDSAGGSAKTGRNRKFQAI 416

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK+LNVER    +  ++ EI +++TA+GTGI ++  D++K+RY KI+IMTDADVDG
Sbjct: 417 LPLRGKVLNVERVAEVRAFANAEIKSIVTAIGTGIKEEL-DLSKIRYGKIVIMTDADVDG 475

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLTFF+R M  L+ NG +YI +PPL+ I  GK ++Y   +  LE++  N+    
Sbjct: 476 AHIRTLLLTFFYRYMKQLVDNGNIYIAQPPLFKIEAGKKVEYAYSDAELENFKQNEFKDS 535



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    S      +V      V    +    
Sbjct: 423 VLNVERVAEVRAFANAEIKSIVTAIGTGIKEELDLSKIRYGKIVIMTDADVDGAHIRTLL 482

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    + + +  I       L  I  G K++     + L+      F   R   ++
Sbjct: 483 LTFFYRYMKQLVDNGNIY-IAQPPLFKIEAGKKVEYAYSDAELENFKQNEFKDSR--YTI 539

Query: 737 QRYKGLGEMNASQL 750
           QRYKGLGEM+  QL
Sbjct: 540 QRYKGLGEMDPIQL 553


>gi|254711140|ref|ZP_05172951.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94]
 gi|256029521|ref|ZP_05443135.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1]
 gi|261318731|ref|ZP_05957928.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94]
 gi|265986529|ref|ZP_06099086.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1]
 gi|261297954|gb|EEY01451.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94]
 gi|264658726|gb|EEZ28987.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1]
          Length = 699

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 235/564 (41%), Positives = 336/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 58  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 116

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 117 VDKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 176

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 177 VVNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNA 236

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 237 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 296

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           K  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 297 KHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 355

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 356 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVE 413

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 414 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 472

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 473 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 532

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 533 VQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 591

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 592 VPPLYRLSQGGKTAYARDDAHKEE 615



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 512 ILNVASAGREKLTANQQIADLVQALGCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 571

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L   G             LL T+F+ GR  I + 
Sbjct: 572 ITFFYQEMPELIRNGHLYLAVPPLYRLSQGGKTAYARDDAHKEELLRTVFT-GRGKIEIG 630

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 631 RFKGLGEMRADQLKETTMDPAKRTLLRVQVDEEYGDETRNTVDDLMGTKPEARFRFIQDR 690

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 691 AAFVEELDI 699


>gi|115381154|gb|ABI96226.1| DNA gyrase subunit B [Mesoplasma corruscae]
          Length = 553

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/540 (45%), Positives = 350/540 (64%), Gaps = 7/540 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T   SGLHH+++E+LDN+IDE++ G+AD IT+TL  DG   V DNGRGIP  + ++ G
Sbjct: 1   GSTSK-SGLHHLVWEILDNSIDEAMAGFADKITLTLTKDGEVIVEDNGRGIPVGVQQDSG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + +KREG I++  F  
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHKQIFSA 119

Query: 153 GIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISL 210
           G      + + G     TGT+V F P  +IF+   D++Y+T+++++++LS+LN  + I  
Sbjct: 120 GGTIQTEIEIIGET-VQTGTKVRFKPDPEIFTEVIDYDYETVRNKVKQLSYLNKGLVIQF 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D+R     E       GI  +V   +  K+ +  S   I G   +I +++A+++N  Y 
Sbjct: 179 NDERIDRSIEYHF--PNGILDYVKEKNETKQKINPSVYYIDGKYGDIEVEVALQYNAEYQ 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+++ F NNI   +GGTH  GLR AL R +  Y EK     K       DD +EG   ++
Sbjct: 237 ESLITFVNNINTHEGGTHEDGLRQALVRVLNRYAEKVAIGNKQAAKYSWDDIKEGMVCIV 296

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SI+  DP++  QTK KL + + +  V+  V D    +L + P +AK I+ K  +A   R 
Sbjct: 297 SIRHTDPQYEGQTKTKLANPDAKKAVDVVVGDSFEEFLLKSPEDAKAILDKNANAQKARI 356

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  LD  SLPGKLADC  +DP  +EL+LVEGDSAGGSAK GR+R+ QAI
Sbjct: 357 AAQRAREETRRKSALDTFSLPGKLADCESKDPSIAELYLVEGDSAGGSAKTGRNRKFQAI 416

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK+LNVER    +  ++ EI +++TA+GTGI ++  D++K+RY KI+IMTDADVDG
Sbjct: 417 LPLRGKVLNVERVAEVRAFANAEIKSIVTAIGTGIKEEL-DLSKIRYGKIVIMTDADVDG 475

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLTFF+R M  L+ NG +YI +PPL+ I  GK ++Y   +  LE++  N+    
Sbjct: 476 AHIRTLLLTFFYRYMKQLVDNGNIYIAQPPLFKIEAGKKVEYAYSDAELENFKQNEFKDS 535



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    S      +V      V    +    
Sbjct: 423 VLNVERVAEVRAFANAEIKSIVTAIGTGIKEELDLSKIRYGKIVIMTDADVDGAHIRTLL 482

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    + + +  I       L  I  G K++     + L+      F   R   ++
Sbjct: 483 LTFFYRYMKQLVDNGNIY-IAQPPLFKIEAGKKVEYAYSDAELENFKQNEFKDSR--YTI 539

Query: 737 QRYKGLGEMNASQL 750
           QRYKGLGEM+  QL
Sbjct: 540 QRYKGLGEMDPIQL 553


>gi|40063591|gb|AAR38380.1| DNA topoisomerase IV, B subunit [uncultured marine bacterium 582]
          Length = 652

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/577 (39%), Positives = 327/577 (56%), Gaps = 17/577 (2%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MS++     Q S Y+A SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE+
Sbjct: 1   MSEDLLSSTQGSDYNASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I V L+ D + T+ DNGRGIP D H +    SA EVI+  LH+GGKF+ K+Y+
Sbjct: 60  VAGHANRIEVELHADYAVTIRDNGRGIPVDPHPKFKDKSALEVILCTLHSGGKFSGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + + + R   ++E  F  GI   P+  TG+A N  GT VTF
Sbjct: 120 TSGGLHGVGASVVNALSDSMVVEVARNKELFEQRFSRGIPLGPVAKTGTAANRRGTSVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFV 233
                IF    F    L   +R  ++L S V+I           P+E    + GG+  ++
Sbjct: 180 HADEQIFGSHRFKPARLLKMVRSKAYLFSGVEIRWKSAVSDGDTPQEAVFHFPGGLADYL 239

Query: 234 SYLDRHKKPLMQSPIRIQ---GSRDNI--SIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                      + P         + ++   ++ A+ W       +  + N +P  +GGTH
Sbjct: 240 GETLAGATTYAEKPFAGSIDFQEKFSVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G  +A+ + + +Y E S   K  +  +  DD   G  +++S  + +P F  QTK++L 
Sbjct: 300 EAGFWTAILKGMRAYGELSNNKKAAQ--ITRDDLITGGCALVSCFISEPEFVGQTKDRLA 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E + +VE+ V D    WL      A  I+  ++         RR    T+RK      
Sbjct: 358 TTEAQRLVENAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETQRKTATKRL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DCS    + +ELFLVEGDSAGGSAK  R+R+ QA+LPLRGKILNV  A   K+
Sbjct: 417 RLPGKLVDCSATAREGTELFLVEGDSAGGSAKMARNRKVQALLPLRGKILNVLGAASAKI 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++QEI  L  A+G  +G   F+++ LRY KIIIMTDADVDGAHI  LL+TFFF QM  +
Sbjct: 477 GTNQEISDLSQAMGVNLG-TRFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPM 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           I  G LY+  PPL+ +T+G    Y  DE   +++L  
Sbjct: 536 IDAGHLYLACPPLFRLTQGAKRVYCVDEIERDEWLEK 572



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 5/188 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N        +    ++++    +       ++      D ++      V    +    
Sbjct: 465 ILNVLGAASAKIGTNQEISDLSQAMGVNLGTRFNLDDLRYDKIIIMTDADVDGAHIAALL 524

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKG-ISMQR 738
             F F      I +  +      +  L     ++         + +   +G KG I + R
Sbjct: 525 MTFFFTQMRPMIDAGHLYLACPPLFRLTQGAKRVYCVDEIERDEWLEKGLGGKGKIDVSR 584

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM+A  L ETT++P +R L+RV I +    +  DL  RLMG + E R ++IQEN+
Sbjct: 585 FKGLGEMDAKDLKETTMDPSSRKLIRVSIDEDEPGETGDLVERLMGKKPELRFQYIQENA 644

Query: 797 LPS-ALDI 803
                LD+
Sbjct: 645 RFVQELDV 652


>gi|17989021|ref|NP_541654.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|62317552|ref|YP_223405.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|83269533|ref|YP_418824.1| DNA topoisomerase IV subunit B [Brucella melitensis biovar Abortus
           2308]
 gi|225686377|ref|YP_002734349.1| DNA topoisomerase IV subunit B [Brucella melitensis ATCC 23457]
 gi|237817100|ref|ZP_04596092.1| DNA topoisomerase IV, B subunit [Brucella abortus str. 2308 A]
 gi|254691049|ref|ZP_05154303.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870]
 gi|254695645|ref|ZP_05157473.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254698833|ref|ZP_05160661.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699828|ref|ZP_05161656.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513]
 gi|254705913|ref|ZP_05167741.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10]
 gi|254712402|ref|ZP_05174213.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1]
 gi|254715474|ref|ZP_05177285.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1]
 gi|254732280|ref|ZP_05190858.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292]
 gi|256015368|ref|YP_003105377.1| DNA topoisomerase IV subunit B [Brucella microti CCM 4915]
 gi|256043489|ref|ZP_05446416.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256059216|ref|ZP_05449422.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33]
 gi|256111492|ref|ZP_05452506.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157716|ref|ZP_05455634.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1]
 gi|256253313|ref|ZP_05458849.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94]
 gi|256256234|ref|ZP_05461770.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68]
 gi|256262482|ref|ZP_05465014.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544788|ref|ZP_05820609.1| DNA topoisomerase IV subunit B [Brucella abortus NCTC 8038]
 gi|260564683|ref|ZP_05835168.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260756645|ref|ZP_05868993.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870]
 gi|260760075|ref|ZP_05872423.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292]
 gi|260763314|ref|ZP_05875646.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882462|ref|ZP_05894076.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68]
 gi|261216044|ref|ZP_05930325.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|261217208|ref|ZP_05931489.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1]
 gi|261220428|ref|ZP_05934709.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94]
 gi|261313342|ref|ZP_05952539.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10]
 gi|261320079|ref|ZP_05959276.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1]
 gi|261323165|ref|ZP_05962362.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33]
 gi|261750301|ref|ZP_05994010.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513]
 gi|265989906|ref|ZP_06102463.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265992989|ref|ZP_06105546.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996221|ref|ZP_06108778.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1]
 gi|294853612|ref|ZP_06794284.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|297249591|ref|ZP_06933292.1| DNA topoisomerase IV, B subunit [Brucella abortus bv. 5 str. B3196]
 gi|17984860|gb|AAL53918.1| DNA gyrase subunit b [Brucella melitensis bv. 1 str. 16M]
 gi|62197745|gb|AAX76044.1| ParE, DNA topoisomerase IV, B subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82939807|emb|CAJ12815.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Brucella melitensis biovar Abortus 2308]
 gi|225642482|gb|ACO02395.1| DNA topoisomerase IV, B subunit [Brucella melitensis ATCC 23457]
 gi|237787913|gb|EEP62129.1| DNA topoisomerase IV, B subunit [Brucella abortus str. 2308 A]
 gi|255998028|gb|ACU49715.1| DNA topoisomerase IV subunit B [Brucella microti CCM 4915]
 gi|260098059|gb|EEW81933.1| DNA topoisomerase IV subunit B [Brucella abortus NCTC 8038]
 gi|260152326|gb|EEW87419.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260670393|gb|EEX57333.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292]
 gi|260673735|gb|EEX60556.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676753|gb|EEX63574.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870]
 gi|260871990|gb|EEX79059.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68]
 gi|260917651|gb|EEX84512.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|260919012|gb|EEX85665.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94]
 gi|260922297|gb|EEX88865.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1]
 gi|261292769|gb|EEX96265.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1]
 gi|261299145|gb|EEY02642.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33]
 gi|261302368|gb|EEY05865.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10]
 gi|261740054|gb|EEY27980.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513]
 gi|262550518|gb|EEZ06679.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1]
 gi|262763859|gb|EEZ09891.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000575|gb|EEZ13265.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092218|gb|EEZ16515.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 2 str.
           63/9]
 gi|294819267|gb|EFG36267.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|297173460|gb|EFH32824.1| DNA topoisomerase IV, B subunit [Brucella abortus bv. 5 str. B3196]
          Length = 699

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/564 (41%), Positives = 336/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 58  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 116

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 117 VDKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 176

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 177 VVNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNA 236

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 237 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 296

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 297 EHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 355

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 356 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVE 413

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 414 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 472

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 473 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 532

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 533 VQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 591

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 592 VPPLYRLSQGGKTAYARDDAHKEE 615



 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 512 ILNVASAGREKLTANQQIADLVQALGCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 571

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L   G             LL T+F+ GR  I + 
Sbjct: 572 ITFFYQEMPELIRNGHLYLAVPPLYRLSQGGKTAYARDDAHKEELLRTVFT-GRGKIEIG 630

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 631 RFKGLGEMRADQLKETTMDPAKRTLLRVQVDEEYGDETRNTVDDLMGTKPEARFRFIQDR 690

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 691 AAFVEELDI 699


>gi|213584808|ref|ZP_03366634.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 427

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 248/430 (57%), Positives = 327/430 (76%), Gaps = 4/430 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+  
Sbjct: 1   ETLMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCK 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHG
Sbjct: 61  DIVVTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS + F
Sbjct: 121 VGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETF 179

Query: 183 SV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K 
Sbjct: 180 TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKT 237

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + 
Sbjct: 238 PIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 297

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N
Sbjct: 298 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 357

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERD
Sbjct: 358 ELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERD 417

Query: 422 PKKSELFLVE 431
           P  SEL+LVE
Sbjct: 418 PALSELYLVE 427


>gi|94497614|ref|ZP_01304183.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. SKA58]
 gi|94423031|gb|EAT08063.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. SKA58]
          Length = 658

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 236/590 (40%), Positives = 333/590 (56%), Gaps = 26/590 (4%)

Query: 1   MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MSD+      + ++ YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EVLDN++D
Sbjct: 1   MSDDLFAASPVPSTDYDASTIEVLEGLEPVRRRPGMYIGGTD-ERALHHLASEVLDNSMD 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKS 113
           E++ G+A  I VTL      T++DNGRGIP D H +    SA EVI+T LH+GGKF  K+
Sbjct: 60  EAVAGHATRIEVTLEPGNRLTITDNGRGIPVDPHPKFPNQSALEVILTTLHSGGKFEGKA 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y  SGGLHGVG+SVVNALS+   + + R   ++  SF  G+   PL   G A N  GT V
Sbjct: 120 YATSGGLHGVGISVVNALSTSTVVEVARNKELFRQSFSQGLPQGPLEKVGGAPNRRGTSV 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGI 229
            F P + IF  Q F    L    R  ++L + V+I             P E    + GG+
Sbjct: 180 AFTPDTAIFGEQKFKPARLYRLARSKAYLFAGVEIRWKCAPELISDDTPPEAVFQFPGGL 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGS------RDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
              +      ++                  R   ++   +  +  Y      + N IP  
Sbjct: 240 ADHLKEQVGDRECATSVFFSGNQDFPGDAGRVEWAVAWPLWSDGSYS----WYCNTIPTP 295

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTH +GLR+AL + I ++ +     K     +  DD       +LS+ + DP+F SQT
Sbjct: 296 DGGTHEAGLRAALVKGIRAFGDLVGQKKAKD--ITADDIMTSSEIMLSVFIRDPQFQSQT 353

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK- 402
           K++L S +   +VE+ V D    +L +H    K ++  VLD    R   ++ +++ R+  
Sbjct: 354 KDRLTSPDAARLVENAVRDHFDHYLTDHMDRGKALLAYVLDRMDERLRRKQEKEVKRKTA 413

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                  LPGKL DCS  DP+ +E+FLVEGDSAGGSAKQ R R+ QAILPLRGKILNV  
Sbjct: 414 TNSRKLRLPGKLTDCSNDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVAS 473

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A   K+ ++QEIG +I ALG GI +D  + + LRY +++IMTDADVDGAHI TLL+TFFF
Sbjct: 474 ANTAKIFANQEIGDMILALGCGIRKDC-NPDNLRYERVVIMTDADVDGAHIATLLMTFFF 532

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           ++MP L+  G LY+ +PPLY +T G    Y KD+   E  L  +   +++
Sbjct: 533 QEMPELVRRGHLYLAQPPLYRLTAGGKSLYAKDDAHREQLLAKEFKGKKV 582



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 7/76 (9%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD-----DLFSRLMGDE 784
           G+K + + R+KGLGEMN  QL ETT++P TRSL+R+ + D  + D     DL  RLMG  
Sbjct: 579 GKK-VDVSRFKGLGEMNPMQLRETTMDPKTRSLIRITLPDDVE-DRQQVRDLVDRLMGTN 636

Query: 785 VEPRREFIQENSLPSA 800
              R  FIQEN+    
Sbjct: 637 PAHRFAFIQENAAAVD 652


>gi|89070780|ref|ZP_01158033.1| DNA topoisomerase IV subunit B [Oceanicola granulosus HTCC2516]
 gi|89043622|gb|EAR49829.1| DNA topoisomerase IV subunit B [Oceanicola granulosus HTCC2516]
          Length = 652

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 235/649 (36%), Positives = 332/649 (51%), Gaps = 18/649 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
              +  +YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE++ G+A+
Sbjct: 7   KGTEPDTYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEAVAGHAN 65

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            I V L+ D + T+ DNGRG+P + H +  G S  EVI+  LHAGGKF+ K+Y+ SGGLH
Sbjct: 66  RIEVELHDDHAITIRDNGRGMPFEEHPKFPGKSTLEVILCTLHAGGKFSGKAYQTSGGLH 125

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  + +++ R+  + E  F  G+   P+   G+A N  GT  TF     I
Sbjct: 126 GVGASVVNALSDSMVVQVARDRKLVEQRFSRGVPLGPVAEVGAAPNRRGTTTTFHADEQI 185

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFVSYLDRH 239
           F    F    L   +R  ++L S V+I           PRE T  + GG+  ++      
Sbjct: 186 FGHHRFKPARLFKMVRSKAYLFSGVEIRWKSAIDDGETPREATFHFPGGLSDYLVETLGS 245

Query: 240 KKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
                  P                ++ A+ W       +  + N +P  +GGTH  G  +
Sbjct: 246 ASTYADKPFAGTVDFQSRFSTPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEQGFWA 305

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ + I +Y E     K     +  DD   G  +++S  + +P F  QTK++L ++E   
Sbjct: 306 AILKGIRAYGELVNNRKAKD--ITRDDLVTGGCALVSCFIREPEFVGQTKDRLATTEAAK 363

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE+ V D    WL      A  I+  ++         RR    T RK       LPGKL
Sbjct: 364 LVEAAVRDHFDHWLTSDTKSAGAILDFLVLR-AEERLRRRQEKETARKSATKKLRLPGKL 422

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DCS      +ELF+VEGDSAGGSAK  R R+ QA+LPLRGKILNV  A   K+ S+ EI
Sbjct: 423 VDCSTSARDGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAAASKLGSNAEI 482

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  ALG G+G   F I+ LRY KIIIMTDADVDGAHI +LL+TFF+ QM  LI +G L
Sbjct: 483 NDLAQALGVGLG-TKFSIDDLRYDKIIIMTDADVDGAHIASLLMTFFYTQMRPLIDHGHL 541

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI- 591
           Y+  PPLY +T+G    YV D+   + ++      +           G +   DL++   
Sbjct: 542 YLACPPLYRLTQGAKRLYVADDREKDYWMGKGLGGKGKIDVQRFKGLGEMDAKDLKDTTM 601

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
             +    I   + D  P      +E+ +             N     +L
Sbjct: 602 NPETRKLIRVSLHDEEPGETADLVERLMGKKPELRFQYISENARFVEEL 650



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREF 791
           I +QR+KGLGEM+A  L +TT+NP+TR L+RV + D    +  DL  RLMG + E R ++
Sbjct: 580 IDVQRFKGLGEMDAKDLKDTTMNPETRKLIRVSLHDEEPGETADLVERLMGKKPELRFQY 639

Query: 792 IQENSLPS-ALDI 803
           I EN+     LD+
Sbjct: 640 ISENARFVEELDV 652


>gi|163737410|ref|ZP_02144827.1| DNA topoisomerase IV, B subunit [Phaeobacter gallaeciensis BS107]
 gi|161388936|gb|EDQ13288.1| DNA topoisomerase 4 subunit B [Phaeobacter gallaeciensis BS107]
          Length = 652

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 238/655 (36%), Positives = 352/655 (53%), Gaps = 22/655 (3%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D++     + +YDA SI++L+GL+ V++RP MYIG TD E  LHHM+ E+LDN++DE+
Sbjct: 1   MADDLLSTPASDTYDASSIEVLEGLEPVRQRPGMYIGGTD-ERALHHMVAEILDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I VTL+ D + T+SDNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGHANRIEVTLHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ +   ++E  F  GI   P+   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGSSVVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKRGTFVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFV 233
                IF    F    L   +R  ++L S V+I    +   +  P E T  + GG++ ++
Sbjct: 180 HADEQIFGSHRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNETPTEATFHFPGGLKDYL 239

Query: 234 SYLDRHKKPLMQSPIRIQGS-----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + +        + P   +            ++ A+ W          + N +P  +GGTH
Sbjct: 240 TEVLGKSSVYAEQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  +A+ + I +Y +     K    S+  +D   G  +++S  + DP F  QTK++L 
Sbjct: 300 VAGFWAAILKGIKAYGDLVGNKKAA--SITREDLMAGGCALVSCFIADPAFVGQTKDRLS 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +     +VE+ V D    WL      A  I+  ++  +  R   ++ ++ T+RK      
Sbjct: 358 TEIAAKMVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKE-TQRKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +D   +ELF+VEGDSAGGS K  R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 417 RLPGKLTDCTSKDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKI 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++ EI  L  ALG G G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 477 GTNAEIRDLCEALGVGTG-TKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G    Y  DE   + +L      +           G +   D
Sbjct: 536 IDGGHLYLACPPLFRLTQGARRVYCLDEAERDLWLEKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFIDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+    D      I   I +  P      +EQ +           + N     +L
Sbjct: 596 LKETTMDPTTRKLIRVTIDEDEPGETGELVEQLMGKKPELRYQYIQENAKFVEEL 650



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 8/207 (3%)

Query: 605 YPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
                +  + QA++     + N        +   +++ +    +   +   ++      D
Sbjct: 446 SGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEIRDLCEALGVGTGTKFNLDDLRYD 505

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
            ++      V    +      F F      I    +      +  L     ++       
Sbjct: 506 KIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACPPLFRLTQGARRVYCLDEAE 565

Query: 722 LLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLF 777
               +   +G KG I + R+KGLGEM+A  L ETT++P TR L+RV I +    +  +L 
Sbjct: 566 RDLWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPTTRKLIRVTIDEDEPGETGELV 625

Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803
            +LMG + E R ++IQEN+     LD+
Sbjct: 626 EQLMGKKPELRYQYIQENAKFVEELDV 652


>gi|84497177|ref|ZP_00995999.1| DNA topoisomerase IV subunit B [Janibacter sp. HTCC2649]
 gi|84382065|gb|EAP97947.1| DNA topoisomerase IV subunit B [Janibacter sp. HTCC2649]
          Length = 719

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 271/594 (45%), Positives = 378/594 (63%), Gaps = 25/594 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YDA +IQ+L+GLDAV+KRP MYIG T GE GLHH+++E++DNA+DESL G+AD I V
Sbjct: 61  DATYDASAIQVLEGLDAVRKRPGMYIGST-GERGLHHLVWEIVDNAVDESLAGHADTIDV 119

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  +G   V DNGRGIPT +++  G+S  E+++T+LHAGGKF    YKVSGGLHGVG S
Sbjct: 120 TLLGNGGVQVKDNGRGIPTGMNEAYGVSTVELVLTQLHAGGKFGGGGYKVSGGLHGVGSS 179

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L   +++ G+++ M F +G    PL   G   +  G+ +T+     IF   +
Sbjct: 180 VVNALSTRLIAEVRQLGHVWRMEFDHGERLAPLEQVGETADH-GSTITYWADDQIFETVE 238

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----------------PREITMFYKGGI 229
           ++Y+T++ R ++ +FLN  + I+L D+R  E                  R I+  Y GG+
Sbjct: 239 YDYETIRARFQQYAFLNKGLTINLTDERVQESAADEDESDSVEGNESRKRTISYCYPGGL 298

Query: 230 EAFVSYLDRHK--KPLMQSPIRIQGSRDNIS--IDLAMRWNDGYHENVLCFTNNIPQKDG 285
             +V++L   K  +P+    I I+         ++LAM+W   Y E+V  + N +   +G
Sbjct: 299 IDYVTHLVASKKSEPVHPDIISIEVEDKARELNLELAMQWTTAYSESVHTYANTVNTHEG 358

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT+ I  +  K    K    ++ GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 359 GTHEEGFRAALTKMINDFARKQNQLKDKDENLTGDDVREGLTAVISVKLGEPQFEGQTKT 418

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SEV+  V+  + D    WLE HP E K IV+K + A   R AAR+AR+ T RK VL
Sbjct: 419 KLGNSEVKGFVQRAMTDSFGDWLERHPNEGKEIVRKAIQAQTARLAARKAREAT-RKRVL 477

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +   LPGKL DC  +DP  SE+++VEGDSAGGSA +GR+  NQAILP+RGKILNVERAR 
Sbjct: 478 ESGGLPGKLRDCQAKDPAVSEVYIVEGDSAGGSAVRGRNPFNQAILPIRGKILNVERARL 537

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK L++QE+  LI+A GTGIG+D F+I+K RYHKI+IM DADVDG HIRTLLLT  FR M
Sbjct: 538 DKALANQEVQALISAFGTGIGED-FNIDKARYHKIVIMADADVDGMHIRTLLLTLLFRFM 596

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             LI  G++Y+ +PPLY I    +       +   D L  +  S+   +  D+ 
Sbjct: 597 KPLIEAGYVYLAQPPLYRIKWSNAPHEFAFTDRERDALTAEGQSKGRRMPKDNG 650



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 60/88 (68%), Gaps = 8/88 (9%)

Query: 724 DTIFSIGR-KGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G+ KG        +QRYKGLGEM+  +LWETT++PD R LL++ + DA+ AD++
Sbjct: 632 DALTAEGQSKGRRMPKDNGIQRYKGLGEMDYQELWETTMDPDHRVLLQITLDDAAAADEV 691

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMG++VE RR FIQ N+     LDI
Sbjct: 692 FSVLMGEDVESRRSFIQRNARDVRFLDI 719


>gi|225629085|ref|ZP_03787118.1| DNA topoisomerase IV, B subunit [Brucella ceti str. Cudo]
 gi|260167389|ref|ZP_05754200.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99]
 gi|261756798|ref|ZP_06000507.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99]
 gi|225615581|gb|EEH12630.1| DNA topoisomerase IV, B subunit [Brucella ceti str. Cudo]
 gi|261736782|gb|EEY24778.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99]
          Length = 699

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/564 (41%), Positives = 337/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 58  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 116

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 117 VDKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 176

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 177 VVNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNA 236

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 237 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 296

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 297 EHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 355

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD     + +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 356 RGLKAYAELTNNKRAS--IITTDDVMVSASGMLSVFIREPEFVGQTKDKLATVEAQRLVE 413

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 414 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 472

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 473 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 532

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 533 VQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 591

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 592 VPPLYRLSQGGKTAYARDDAHKEE 615



 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 512 ILNVASAGREKLTANQQIADLVQALGCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 571

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L   G             LL T+F+ GR  I + 
Sbjct: 572 ITFFYQEMPELIRNGHLYLAVPPLYRLSQGGKTAYARDDAHKEELLRTVFT-GRGKIEIG 630

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 631 RFKGLGEMRADQLKETTMDPAKRTLLRVQVDEEYGDETRNTVDDLMGTKPEARFRFIQDR 690

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 691 AAFVEELDI 699


>gi|6502512|gb|AAF14340.1|U86303_1 topoisomerase IV ParE subunit [Caulobacter crescentus CB15]
 gi|2749947|gb|AAC38044.1| DNA topoisomerase IV ParE subunit [Caulobacter crescentus CB15]
          Length = 667

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/565 (39%), Positives = 313/565 (55%), Gaps = 18/565 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A  I++L+GL+ V+KRP MYIG TD E  LHH+  EVLDN++DE++ G+A  I V L
Sbjct: 26  EYSAADIEVLEGLEPVRKRPGMYIGGTD-ERALHHLFAEVLDNSMDEAVAGFAKTIEVKL 84

Query: 69  NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           + DG  +V D+GRG+P D H +  G SA EVIMT LHAGGKF  K+Y+ SGGLHGVG SV
Sbjct: 85  DADGFLSVKDDGRGMPVDPHPKYPGKSALEVIMTVLHAGGKFTGKAYETSGGLHGVGASV 144

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186
           VNALS  +++ + R+G  +   F  G    P+     +    GT V F P  +IF    +
Sbjct: 145 VNALSERVEVTVWRDGFEHLQVFSRGKPLGPIQQVAPSKKK-GTMVRFKPDDEIFGEGTN 203

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           F    L    R  ++L   VQI             P E T  +  G+  F++   +    
Sbjct: 204 FKPARLYRMARSKAYLFRGVQIKWSCDPSRIHDQTPPEATFHFPNGLADFLAERTKGLTT 263

Query: 243 LMQSPIRIQGSRD------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +       +  R         ++    +    +   +  + N +P  +GGTH SG R+AL
Sbjct: 264 ITPESFAGRIERQGEAGAVEWAVTWTPQGFGEHDGFMQSYCNTVPTPEGGTHESGFRAAL 323

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y E     +     +  DD      +++S+ + +P F  QTKEKL +SE +  V
Sbjct: 324 TRGLKAYAELKGEKRG--TIITADDVVAQAGALISVFIKNPEFQGQTKEKLSTSEAQRFV 381

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ + D    WL   P  A+ +++ V++ +  R   R+ ++   R        LPGKLAD
Sbjct: 382 EASLRDPFDLWLSSSPKNAQALLEFVIERAEERLKRRKDKE-VSRASATRKLRLPGKLAD 440

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C+      +ELF+VEGDSAGGSAKQ R R+ QAILPLRGKILNV  A  +K  +++E+  
Sbjct: 441 CAGSAVDGAELFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVASASGEKFTANKELSD 500

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L+ ALG   G   +    LRY +IIIMTDADVDGAHI +LL+TFF+R MP LI  G L++
Sbjct: 501 LMLALGAQAGAK-YREEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPELIRGGHLFL 559

Query: 537 IKPPLYGITRGKSLQYVKDEESLED 561
             PPLY +  G   +Y +D+   E+
Sbjct: 560 ALPPLYRLAHGGKSEYARDDAHKEE 584



 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S      +   +L++ +  +  ++   +       + ++      V    +    
Sbjct: 481 ILNVASASGEKFTANKELSDLMLALGAQAGAKYREEDLRYERIIIMTDADVDGAHIASLL 540

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F + +  + I    +      +  L   G             LL T+F  G+K   + 
Sbjct: 541 ITFFYRTMPELIRGGHLFLALPPLYRLAHGGKSEYARDDAHKEELLATVFK-GKK-PEIG 598

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKIT-DASQADDLFSRLMGDEVEPRREFIQENS 796
           R+KGLGEM ASQL ETT++P  R+L RV +       +DL   LMG + E R  FIQEN+
Sbjct: 599 RFKGLGEMMASQLKETTMDPKKRTLARVTLPRHEESVEDLVETLMGRKPELRFRFIQENA 658

Query: 797 --LPSALD 802
               + LD
Sbjct: 659 EFASADLD 666


>gi|16126217|ref|NP_420781.1| DNA topoisomerase IV subunit B [Caulobacter crescentus CB15]
 gi|221234989|ref|YP_002517425.1| DNA topoisomerase IV subunit B [Caulobacter crescentus NA1000]
 gi|13638361|sp|O54479|PARE_CAUCR RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|13423439|gb|AAK23949.1| topoisomerase IV, subunit B [Caulobacter crescentus CB15]
 gi|220964161|gb|ACL95517.1| topoisomerase IV subunit B [Caulobacter crescentus NA1000]
          Length = 695

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/565 (39%), Positives = 313/565 (55%), Gaps = 18/565 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A  I++L+GL+ V+KRP MYIG TD E  LHH+  EVLDN++DE++ G+A  I V L
Sbjct: 54  EYSAADIEVLEGLEPVRKRPGMYIGGTD-ERALHHLFAEVLDNSMDEAVAGFAKTIEVKL 112

Query: 69  NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           + DG  +V D+GRG+P D H +  G SA EVIMT LHAGGKF  K+Y+ SGGLHGVG SV
Sbjct: 113 DADGFLSVKDDGRGMPVDPHPKYPGKSALEVIMTVLHAGGKFTGKAYETSGGLHGVGASV 172

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186
           VNALS  +++ + R+G  +   F  G    P+     +    GT V F P  +IF    +
Sbjct: 173 VNALSERVEVTVWRDGFEHLQVFSRGKPLGPIQQVAPSKKK-GTMVRFKPDDEIFGEGTN 231

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           F    L    R  ++L   VQI             P E T  +  G+  F++   +    
Sbjct: 232 FKPARLYRMARSKAYLFRGVQIKWSCDPSRIHDQTPPEATFHFPNGLADFLAERTKGLTT 291

Query: 243 LMQSPIRIQGSRD------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +       +  R         ++    +    +   +  + N +P  +GGTH SG R+AL
Sbjct: 292 ITPESFAGRIERQGEAGAVEWAVTWTPQGFGEHDGFMQSYCNTVPTPEGGTHESGFRAAL 351

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y E     +     +  DD      +++S+ + +P F  QTKEKL +SE +  V
Sbjct: 352 TRGLKAYAELKGEKRG--TIITADDVVAQAGALISVFIKNPEFQGQTKEKLSTSEAQRFV 409

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ + D    WL   P  A+ +++ V++ +  R   R+ ++   R        LPGKLAD
Sbjct: 410 EASLRDPFDLWLSSSPKNAQALLEFVIERAEERLKRRKDKE-VSRASATRKLRLPGKLAD 468

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C+      +ELF+VEGDSAGGSAKQ R R+ QAILPLRGKILNV  A  +K  +++E+  
Sbjct: 469 CAGSAVDGAELFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVASASGEKFTANKELSD 528

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L+ ALG   G   +    LRY +IIIMTDADVDGAHI +LL+TFF+R MP LI  G L++
Sbjct: 529 LMLALGAQAGAK-YREEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPELIRGGHLFL 587

Query: 537 IKPPLYGITRGKSLQYVKDEESLED 561
             PPLY +  G   +Y +D+   E+
Sbjct: 588 ALPPLYRLAHGGKSEYARDDAHKEE 612



 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S      +   +L++ +  +  ++   +       + ++      V    +    
Sbjct: 509 ILNVASASGEKFTANKELSDLMLALGAQAGAKYREEDLRYERIIIMTDADVDGAHIASLL 568

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F + +  + I    +      +  L   G             LL T+F  G+K   + 
Sbjct: 569 ITFFYRTMPELIRGGHLFLALPPLYRLAHGGKSEYARDDAHKEELLATVFK-GKK-PEIG 626

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKIT-DASQADDLFSRLMGDEVEPRREFIQENS 796
           R+KGLGEM ASQL ETT++P  R+L RV +       +DL   LMG + E R  FIQEN+
Sbjct: 627 RFKGLGEMMASQLKETTMDPKKRTLARVTLPRHEESVEDLVETLMGRKPELRFRFIQENA 686

Query: 797 --LPSALD 802
               + LD
Sbjct: 687 EFASADLD 694


>gi|163844743|ref|YP_001622398.1| DNA topoisomerase IV subunit B [Brucella suis ATCC 23445]
 gi|163675466|gb|ABY39576.1| DNA topoisomerase IV, B subunit [Brucella suis ATCC 23445]
          Length = 699

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/564 (41%), Positives = 335/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 58  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 116

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 117 VDKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 176

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 177 VVNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNA 236

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 237 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 296

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 297 EHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 355

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 356 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVE 413

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       L GKLADC
Sbjct: 414 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLSGKLADC 472

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 473 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 532

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 533 VQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 591

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 592 VPPLYRLSQGGKTAYARDDAHKEE 615



 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 10/278 (3%)

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           ++   P       + +    DE                     S  +           + 
Sbjct: 423 WLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLSGKLADCTQNAAAGAEL 482

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
             ++           +    QA++     + N  S     ++   ++A+ +  +   + K
Sbjct: 483 FIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGTRK 542

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
           ++       D ++      V    +      F +    + I +  +      +  L   G
Sbjct: 543 NYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQGG 602

Query: 712 DKIKITG---PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                        LL T+F+ GR  I + R+KGLGEM A QL ETT++P  R+LLRV++ 
Sbjct: 603 KTAYARDDAHKEELLRTVFT-GRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQVD 661

Query: 769 DA--SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +    +  +    LMG + E R  FIQ+ +     LDI
Sbjct: 662 EEYGDETRNTVDDLMGTKPEARFRFIQDRAAFVEELDI 699


>gi|255526781|ref|ZP_05393681.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|255509509|gb|EET85849.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
          Length = 653

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/608 (37%), Positives = 340/608 (55%), Gaps = 22/608 (3%)

Query: 1   MSDNIQNSS-YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M    +    YD  ++  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   G
Sbjct: 1   MEQREEKVQVYDVTALTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D   V LN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKFN   YK SGG
Sbjct: 60  FGDKAIVILNKDKSVTIIDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNDVYKTSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGND 168
           LHGVG +VVNALS W+ + IK+ G+IY   F             G     L + G+   +
Sbjct: 120 LHGVGAAVVNALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNTK-E 178

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT+VTFLP  D+FS  +F +D +  RL+EL+F N  + + +IDKR  E  E     + G
Sbjct: 179 TGTKVTFLPDKDVFSNTEFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKEYHSERG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKD 284
           +  F+ YL+  K  L   PI  +G R+   I    ++ +++ D   E +  + NNIP  +
Sbjct: 239 LLDFIEYLNESKTALHTPPILFEGEREVNGISMYSEVCVQFTDSTTEYIASYVNNIPTTE 298

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
            GTH SG ++ +TR    + +K    K+  +   GDD REG T+++ IK+ +P F  QTK
Sbjct: 299 SGTHESGFKAGMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTK 358

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E  +++        S W+E++   A  I+   +DA+  R+  ++  +  ++K  
Sbjct: 359 TKLGNTEAYTMMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKINEAEKKKIG 418

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
              A L GK+A C+ +DP  SE  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ +
Sbjct: 419 KGTAPLAGKIAVCTLKDPSFSEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQK 478

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            + +L S+E+    TA+GTG+   ++    L+Y+KIIIM+DADVDG HIRTL +T+ +R 
Sbjct: 479 LENVLGSEELKIFNTAIGTGV-LQNYKEQDLKYNKIIIMSDADVDGYHIRTLWMTYIYRY 537

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY---LINQSLSEEIELFCDSKGV 581
           M  +I NG LYI  PPLY + +    + +      ++       Q     +       G 
Sbjct: 538 MRQIISNGHLYIALPPLYKVYKQNKNKEIVRYAYSDEELEKEKKQVGKGALIQRYKGLGE 597

Query: 582 ISKNDLRN 589
           ++ + L  
Sbjct: 598 MNPDQLWE 605



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 53/76 (69%), Gaps = 3/76 (3%)

Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + +    +   KG  +QRYKGLGEMN  QLWETTLNP+TR+L ++ I DA++A+ + S L
Sbjct: 574 EELEKEKKQVGKGALIQRYKGLGEMNPDQLWETTLNPETRTLQQITIEDAAKAEKMVSLL 633

Query: 781 MGDEVEPRREFIQENS 796
           MGD V PR+ ++ + +
Sbjct: 634 MGDVVAPRKNYMYKYA 649


>gi|70704950|gb|AAZ06866.1| DNA gyrase subunit B [Acholeplasma multilocale]
          Length = 539

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/526 (45%), Positives = 344/526 (65%), Gaps = 6/526 (1%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH+++E++DN+IDE++ G AD I VT+  DG   V DNGRGIP  + ++ G SA E++
Sbjct: 4   GLHHLVWEIIDNSIDEAMAGEADTIKVTITNDGEVIVQDNGRGIPVGIQQDSGKSALELV 63

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNP 158
            T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ +++ R+G IY   F  G    + 
Sbjct: 64  FTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVQVMRDGKIYHQVFSGGGTEQSE 123

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L + G   +  GT V F P  +IF     F+++T++++ ++LS+LN  +++ L D R  +
Sbjct: 124 LEIIGET-DLRGTIVRFKPDPEIFLETVTFDFETIRNKAKQLSYLNKGIKLELTDDRIEK 182

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
             E       GI  +V   +  K  +  +   I G  + I +++A+++N  Y EN++ F 
Sbjct: 183 HVEYHF--PNGILDYVKEKNETKTKINPNVFYIDGKHEEIEVEVALQYNSEYQENLVTFV 240

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNI   +GG+H  GLR +LTR +  Y  K+  + K       DD +EG   ++SI+  DP
Sbjct: 241 NNINTHEGGSHEDGLRQSLTRVLNRYAVKTAKANKAPSKYSWDDIKEGMVCIVSIRHTDP 300

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           ++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   R AA+RAR+
Sbjct: 301 QYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAILDKNANAQKARIAAQRARE 360

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
            TRRKG LD  SLPGKLADC  +D + +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+
Sbjct: 361 ETRRKGALDTFSLPGKLADCESKDAEIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKV 420

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVER    +  ++ EI +++TA+GTGI +D  D++K+RY KI+IMTDADVDGAHIRTLL
Sbjct: 421 LNVERVAEARAFANNEIKSIVTAIGTGIKEDI-DLSKIRYGKIVIMTDADVDGAHIRTLL 479

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           LTFF+R M  LI NG +YI +PPLY I  GK + Y   ++ LED+ 
Sbjct: 480 LTFFYRYMKELIKNGNIYIAQPPLYKIEAGKKVAYAYSDQQLEDFK 525


>gi|15894905|ref|NP_348254.1| DNA topoisomerase IV subunit B [Clostridium acetobutylicum ATCC
           824]
 gi|15024585|gb|AAK79594.1|AE007672_1 DNA gyrase B subunit [Clostridium acetobutylicum ATCC 824]
 gi|325509042|gb|ADZ20678.1| DNA topoisomerase IV subunit B [Clostridium acetobutylicum EA 2018]
          Length = 650

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/607 (36%), Positives = 340/607 (56%), Gaps = 21/607 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N     YD  S+  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   G+
Sbjct: 1   MNKNENIEDYDVTSLTSLEKLEPVRIRPGMYIGST-GSKGLHHCIWEILDNAIDELTNGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D+  + LN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKFN K+YK SGGL
Sbjct: 60  GDMAKIILNKDKSVTIIDNGRGIPTGIHPIKKKSGVEMVYTELHTGGKFNNKNYKTSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169
           HGVG +VVNALS W ++ + + G IY   F             G     +   G   +  
Sbjct: 120 HGVGAAVVNALSKWTEVEVYQNGYIYRQRFEYAYDKELKRDMPGTPVTEIEKIGKT-DKK 178

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+VTF P  ++F+  DF +D +  RL+E++F N  + + L D R  EP+  T   + G+
Sbjct: 179 GTKVTFKPDEEVFTSTDFKFDVIDERLKEIAFQNKGITLILEDHREDEPQVKTYHSERGL 238

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
             F+ YL+  K  + ++PI   G R+   +    ++ +++ D   E +  + NNIP  + 
Sbjct: 239 LDFIDYLNESKTVIHKNPIIFDGEREINGLKLYGEVCLQFTDSTTEYIASYVNNIPTTEA 298

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +G ++ +TR    + +K    K+  +   G+D REG T+++ IK+ +P F  QTK 
Sbjct: 299 GTHEAGFKTGMTRAFKEWAKKLGVLKEKDKEFEGNDVREGMTAIIRIKLTNPVFEGQTKT 358

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++E  +++      G S W+E++   A +I+K  ++A+  R+  ++  +  ++K   
Sbjct: 359 KLGNNEAYTMMNDLAYSGFSEWIEDNKDTATMIIKNAVNAASRREKIKKINEAEKKKIGK 418

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             + L GK+A C+ +D    E  +VEGDSAGGSAKQ R R  Q+I+P +GKI+N E+ + 
Sbjct: 419 GTSPLAGKIAVCTLKDASLCEFIIVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKL 478

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + +L S+E+    TA+GTGI  D++    LRY KIIIM+DADVDG HIRTL +T+ +R M
Sbjct: 479 ENVLGSEELKIFNTAVGTGI-LDNYREEDLRYDKIIIMSDADVDGYHIRTLWMTYIYRYM 537

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVI 582
             LI N  LYI  PPLY + +      V +    ++ L           +       G +
Sbjct: 538 RQLISNEHLYIALPPLYKVYKNSKKGEVVEYAYSDEQLDKAKKEVGKGYLIQRYKGLGEM 597

Query: 583 SKNDLRN 589
           + + L  
Sbjct: 598 NPDQLWE 604



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 5/115 (4%)

Query: 687 SKYKRIF-SNRIEENYLTILSLI----CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
            +Y R   SN      L  L  +      G+ ++       LD       KG  +QRYKG
Sbjct: 534 YRYMRQLISNEHLYIALPPLYKVYKNSKKGEVVEYAYSDEQLDKAKKEVGKGYLIQRYKG 593

Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           LGEMN  QLWETTLNP+TR+L  V I DA++A+ + S LMGD VEPR+ ++ + +
Sbjct: 594 LGEMNPDQLWETTLNPETRTLQMVTIEDAAKAEKMVSLLMGDVVEPRKNYMYKYA 648


>gi|15965186|ref|NP_385539.1| DNA topoisomerase IV subunit B [Sinorhizobium meliloti 1021]
 gi|307309200|ref|ZP_07588871.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti BL225C]
 gi|307321530|ref|ZP_07600925.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti AK83]
 gi|15074366|emb|CAC46012.1| Probable topoisomerase IV subunit B [Sinorhizobium meliloti 1021]
 gi|306892837|gb|EFN23628.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti AK83]
 gi|306900346|gb|EFN30962.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti BL225C]
          Length = 686

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/601 (38%), Positives = 340/601 (56%), Gaps = 18/601 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                S YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A+
Sbjct: 40  KTSDGSDYDASAIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHAN 98

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            I V L+ DG  TV+DNGRGIP + H +  G S  EV+MT LHAGGKF+ K+Y+ SGGLH
Sbjct: 99  FIDVNLDADGYLTVTDNGRGIPVENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLH 158

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P   I
Sbjct: 159 GVGVSVVNALSDDLEVEVARNRRLYRQRFSRGIAQGGLEDLGDVHNRRGTRVRFHPDPQI 218

Query: 182 FSVQ-DFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVS 234
           F     F    L    R  ++L   V+I          + S  P      + GG++ +++
Sbjct: 219 FGPHARFEPARLFRMARSKAYLFGGVEIRWSCDPALLPEGSEIPDRAVFHFPGGLKDYLA 278

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
                +  + +     +  +   + S++ A+ W  G  + +  + N IP  +GGTH +GL
Sbjct: 279 ATLGKEFTVTREIFAGKSEKSGGHGSLEWAVTWYGG-DQQIHSYCNTIPTPEGGTHEAGL 337

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALT+ + +Y E +   +     V  DD       +LS+ + +P F  QTK+KL + E 
Sbjct: 338 RIALTKGLKNYAELTQNKRAA--IVTTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEA 395

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE+ + D    +L ++P EA  ++  V++        RR      RK  +    LPG
Sbjct: 396 QRIVENALRDPFDHYLADNPAEAAKLLDWVVER-AEERVRRRKEKEVSRKTAVRKLRLPG 454

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC++   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q
Sbjct: 455 KLADCAQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQ 514

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           +IG L+ ALG G  +  +    LRY +IIIMTDADVDGAHI +LL+TFF+++MP LI  G
Sbjct: 515 QIGDLVQALGCGT-RSKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGG 573

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            LY+  PPLY +++G    Y +D+   E+ +  +            KG+     L   + 
Sbjct: 574 HLYLAVPPLYRLSQGSKTLYARDDAHREELMRTEFNGRGKVELGRFKGL--GEMLPAQLK 631

Query: 593 D 593
           +
Sbjct: 632 E 632



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVE 786
            GR  + + R+KGLGEM  +QL ETT++P  R+LL+V+I D       D    LMG + E
Sbjct: 609 NGRGKVELGRFKGLGEMLPAQLKETTMDPAKRTLLKVEIDDVDFEGTRDAVDSLMGTKAE 668

Query: 787 PRREFIQENSLPS-ALDI 803
            R  FIQE ++ +  LDI
Sbjct: 669 ARFRFIQERAVFADNLDI 686


>gi|159900885|ref|YP_001547132.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893924|gb|ABX07004.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1188

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 280/718 (38%), Positives = 411/718 (57%), Gaps = 16/718 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   S+YDA  IQ+L+GL+AV++   MY+G     S LHH++YEV+DN++DE+L G+
Sbjct: 1   MATNSNQSTYDAAQIQMLRGLEAVRENMGMYLGG-QDTSALHHLVYEVVDNSVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF-NQKSYKVSGG 119
            D I V +  DGS  V DNGRGIPTD+H  EG SA E+++T LHAGGKF   + YKVSGG
Sbjct: 60  CDTIIVEMRTDGSIAVVDNGRGIPTDIHPVEGRSALEIVLTELHAGGKFKGSQGYKVSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVS VNA+S +L+  +KR+G ++   F  G+   P+   G A   TGT + F P +
Sbjct: 120 LHGVGVSAVNAVSEFLRAEVKRDGKLWAQDFRLGMPQAPVKAVGDAE-GTGTTIIFKPDA 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F+  DFNY TL +RLR++++LN S++  L+D  +           GGI +FV +L R 
Sbjct: 179 QLFTTVDFNYRTLANRLRDMAYLNKSLRFKLVDYNNDREVTYYF--DGGIVSFVRHLTRE 236

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P++  P  ++   +N+++++AM++   ++EN+L FTNNI   DGGTH++G R+ALTR 
Sbjct: 237 KGPVLAQPFYVEKPYENVNVEIAMQYTGDFNENLLAFTNNIANPDGGTHVTGFRAALTRT 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I +Y       K+   ++ G+D REG T+++SIK+  P+F SQTK KL + E ++ VE+ 
Sbjct: 297 INAYGRNKGLLKEGD-ALSGEDVREGLTAIISIKLFRPQFESQTKSKLATPEAKTAVETV 355

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ LSA+L+E+P EA+ I++K L AS  RDAAR+ARDL +RKG L+  +LPGKLADCS+
Sbjct: 356 LNEALSAFLDENPNEARRIIEKSLLASRARDAARKARDLVQRKGALEGFALPGKLADCSD 415

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ++P   E+F+VEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DKML++ E+  LIT
Sbjct: 416 KEPAHCEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKMLANNEVRALIT 475

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALGTGIG+  FDI++LRYH+I+IM+ A  +   IR       F ++   I          
Sbjct: 476 ALGTGIGET-FDISRLRYHRILIMSVAGDEPTLIRNAQGHTEFVRIGEFIDQCIAGQRSA 534

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
             Y +      ++V     L+  + + +     +L       +              ++ 
Sbjct: 535 SEYEVISFDQKRHVARFRPLKAVMRHANHEPMYKLTTRYGRSVK----VTASHSVFVLEN 590

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                         +Q V S      + Q   + L    A     I     +        
Sbjct: 591 GQPVLKKGDQIRLGDQLVASRRIPRPASQPREIDLMKLFAEA-GLIDNLYLRGESVRT-- 647

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
             I  +R+   V +      + I    + ++R+   R              G K  IT
Sbjct: 648 --IAAQRVLNHVSQPEQWNEARINLHTAAWERLVEYRQANGLSQKAVAQRLGVKQAIT 703



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 12/224 (5%)

Query: 591  IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
            I    ++++L   +  +H    +E  +       ++   ++  +       +  +A   E
Sbjct: 966  ISGKQQLEQLSGVWQRHHLAAKVEAHLAKPATKAQAFTPLSDDMVGLEVLAVEELAPTGE 1025

Query: 651  KSWHGSINNSD--------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
              +  S+   +        +        V    +      F F      I +  +     
Sbjct: 1026 FVYDFSVEEDENFLCGTGGLYAHNTDADVDGSHIRTLLLTFFFRHMRDLITNGHLYVAQP 1085

Query: 703  TILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
             +  +        +    +  + I S   G K +++QR+KGLGEMN  QLW+TTLNP  R
Sbjct: 1086 PLFRVQHGKAYKYVYDEATRDEYIRSLPAGTK-VTVQRFKGLGEMNPDQLWDTTLNPGNR 1144

Query: 761  SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             +L+V + DA +AD+ FS LMG+ V PR+ FIQ ++     LD+
Sbjct: 1145 MILQVTVEDAMEADETFSMLMGEIVLPRKRFIQTHAADVKNLDV 1188



 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 504  TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
            TDADVDG+HIRTLLLTFFFR M  LI NG LY+ +PPL+ +  GK+ +YV DE + ++Y+
Sbjct: 1050 TDADVDGSHIRTLLLTFFFRHMRDLITNGHLYVAQPPLFRVQHGKAYKYVYDEATRDEYI 1109

Query: 564  INQSLSEEIE-LFCDSKGVISKNDLRN 589
             +     ++        G ++ + L +
Sbjct: 1110 RSLPAGTKVTVQRFKGLGEMNPDQLWD 1136


>gi|254469391|ref|ZP_05082796.1| DNA topoisomerase IV, B subunit [Pseudovibrio sp. JE062]
 gi|211961226|gb|EEA96421.1| DNA topoisomerase IV, B subunit [Pseudovibrio sp. JE062]
          Length = 698

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 247/654 (37%), Positives = 360/654 (55%), Gaps = 28/654 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  I V
Sbjct: 56  DAEYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHASWIDV 114

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +L+ DG  T++DNGRGIP D H +    SA EVIMT LHAGGKF+ K Y+ SGGLHGVG+
Sbjct: 115 SLSEDGYLTITDNGRGIPIDPHPKYKDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGI 174

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L + + R   +Y  +F  G+ D  L + G   N  GT V F P ++IF   
Sbjct: 175 SVVNALSEELVVEVARNRKLYRQTFRRGLADGGLELVGDVHNRRGTMVRFKPDAEIFGKT 234

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDR 238
             F    L    R  ++L   V+I          + +  P   T  + GG++ ++     
Sbjct: 235 LKFKPARLMKMARSKAYLFGGVEIRWRCAKSLADEANGVPESATFHFPGGLKDYLEEALG 294

Query: 239 HKKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            ++ +       R Q +  + +++ A+ W  G    V  + N +P  +GGTH +GLR AL
Sbjct: 295 KERRVTDEVFAGRTQATGRHGAVEWAVAWFAG-DGFVNSYCNTVPTPEGGTHETGLRYAL 353

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            R + +Y E           + GDD       +LS+ + +P F  QTK+KL ++E   + 
Sbjct: 354 LRGLKAYGELIGNK--KASIITGDDVLTSAAGMLSVFVREPEFVGQTKDKLATNEATRIA 411

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ V D    WL   P +A  +++ V+D +  R   R+ +D   RK  +    LPGKLAD
Sbjct: 412 ENAVRDAFDHWLTASPNQANKLLEWVIDRAEERLKRRQEKD-VARKTAVRRLRLPGKLAD 470

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS      +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  DK++++Q +  
Sbjct: 471 CSTSKSDGTELFIVEGDSAGGSAKQARNRSTQAVLPLRGKILNVANAGRDKLVANQLLSD 530

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI ALG G  + ++D   LRY +I+IMTDADVDGAHI  LL+TFF+++MP LI+NG LY+
Sbjct: 531 LIQALGCGT-RSNYDDKDLRYERIVIMTDADVDGAHIAALLITFFYKEMPDLINNGHLYL 589

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
             PPLY I++G    Y +D+E  E  L               KG+     L   + +   
Sbjct: 590 AVPPLYRISQGGKTLYARDDEHREQLLKTSFKKNGKIEIGRFKGL--GEMLPAQLKET-- 645

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                     +  +  + + V+      E+   +   + +K   R NFI E++E
Sbjct: 646 --------TMDPKRRTLLKVVVGEDEVIETRSAVEQLMGNKPEARFNFIQERAE 691



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 9/161 (5%)

Query: 652 SWHGSINNSDILVKRIARGVQEQ---FVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
               + ++ D+  +RI            +    I  F  +   + +N      +  L  I
Sbjct: 538 GTRSNYDDKDLRYERIVIMTDADVDGAHIAALLITFFYKEMPDLINNGHLYLAVPPLYRI 597

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG---ISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
             G K          + +     K    I + R+KGLGEM  +QL ETT++P  R+LL+V
Sbjct: 598 SQGGKTLYARDDEHREQLLKTSFKKNGKIEIGRFKGLGEMLPAQLKETTMDPKRRTLLKV 657

Query: 766 KI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +   +  +      +LMG++ E R  FIQE +  +  LDI
Sbjct: 658 VVGEDEVIETRSAVEQLMGNKPEARFNFIQERAEFATDLDI 698


>gi|260463892|ref|ZP_05812088.1| DNA topoisomerase IV, B subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259030267|gb|EEW31547.1| DNA topoisomerase IV, B subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 685

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/654 (35%), Positives = 348/654 (53%), Gaps = 30/654 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A  I++L+GL+ V++RP MYIG TD    +HH+  EV+DN++DE++ G+A  I V
Sbjct: 43  SEGYSAADIEVLEGLEPVRRRPGMYIGGTDD-KAMHHLFAEVIDNSMDEAVAGHATFIDV 101

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ DG  +V+DNGRGIP D H +    A EVIMT LH+GGKF+ K Y+ SGGLHGVGVS
Sbjct: 102 ELSADGYLSVTDNGRGIPVDPHPKFKKPALEVIMTTLHSGGKFDSKVYETSGGLHGVGVS 161

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L++ + R   +Y   F  G+  + L   G   N  GT++ F P   IF    
Sbjct: 162 VVNALSDHLEVEVARGRQLYRQRFSRGVPVSGLEHLGEVHNRRGTKIRFHPDEQIFGKGA 221

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDRH 239
            F    L    R  ++L   V+I          ++   P +    + GG++ ++      
Sbjct: 222 AFEPARLYRMTRSKAYLFGGVEIRWTCDPSLIKEKDQTPAKAEFHFPGGLKDYLKASLGD 281

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              + +     +  +   + S++ A+ W  G    V  + N IP  +GGTH +G R+ LT
Sbjct: 282 DFQVTREIFAGKSDKQGGHGSLEWAVTWFGG-DGFVNSYCNTIPTGEGGTHEAGFRNVLT 340

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E     +     V  +D       +LS+ + +P F  QTK++L + E   +VE
Sbjct: 341 RGLRAYAELVGNKRAS--IVTSEDVMISAAGMLSVFIREPEFVGQTKDRLATIEAIRIVE 398

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA-ARRARDLTRRKGVLDIASLPGKLAD 416
           + + D    WL ++P EA  +++ V   +   +   RR      RK  +    LPGKLAD
Sbjct: 399 TAIRDPFDHWLADNPQEASKLLEWV--IARADERVRRRQEKEVSRKSAVRKLRLPGKLAD 456

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C++     +ELF+VEGDSAGGSAKQ R R +QA+LPLRGKILNV  A  DK+ ++Q+I  
Sbjct: 457 CTQNAAAGAELFIVEGDSAGGSAKQARDRASQAVLPLRGKILNVASAGNDKLAANQQISD 516

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI ALG G  +  +    LRY ++IIMTDADVDGAHI +LL+TFF+++MP+L+  G LY+
Sbjct: 517 LIQALGCGT-RSKYRDEDLRYDRVIIMTDADVDGAHIASLLITFFYQEMPALVRGGHLYL 575

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
             PPLY I +G  + Y +D+   ++ L  +            KG+     +   + +   
Sbjct: 576 AVPPLYSIRQGGKVAYARDDAHKDELLRTEFTGRGKVELGRFKGL--GEMMAAQLKE-TT 632

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           +D   +              V     +  +   ++  + +K   R  FI E++E
Sbjct: 633 MDPRKRTLLR----------VDVNEIDSATKDRVDELMGTKPEARFRFIQERAE 676



 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 8/190 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++++ +  +   +   +       D ++      V    +    
Sbjct: 497 ILNVASAGNDKLAANQQISDLIQALGCGTRSKYRDEDLRYDRVIIMTDADVDGAHIASLL 556

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F +      +    +      + S+   G            + + +   GR  + + R
Sbjct: 557 ITFFYQEMPALVRGGHLYLAVPPLYSIRQGGKVAYARDDAHKDELLRTEFTGRGKVELGR 616

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA--DDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM A+QL ETT++P  R+LLRV + +   A  D +   LMG + E R  FIQE +
Sbjct: 617 FKGLGEMMAAQLKETTMDPRKRTLLRVDVNEIDSATKDRV-DELMGTKPEARFRFIQERA 675

Query: 797 LPSA---LDI 803
             +    LDI
Sbjct: 676 EFAEAEVLDI 685


>gi|83312449|ref|YP_422713.1| DNA topoisomerase IV subunit B [Magnetospirillum magneticum AMB-1]
 gi|82947290|dbj|BAE52154.1| Type IIA topoisomerase, B subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 666

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/596 (41%), Positives = 345/596 (57%), Gaps = 21/596 (3%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD       + + Y A  I++L+GL+ V++RP MYIG TD    LHH++ EVLDNA+DE
Sbjct: 4   MSDLFQQLAPKATEYSAKDIEVLEGLEPVRRRPGMYIGGTDD-RALHHLVAEVLDNAMDE 62

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSY 114
           ++ G+A  I + L +DG+CTV DNGRGIP D H +    SA EVI+T LH+GGKF   +Y
Sbjct: 63  AVAGHAGWIELELAVDGTCTVRDNGRGIPVDPHPKYPDKSALEVILTTLHSGGKFGGDAY 122

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L + + R+  ++   F  G+   PL   G   N  GT V 
Sbjct: 123 KVSGGLHGVGVSVVNALSDALTVEVARDRVLWSQRFSRGLPLGPLEKVGPVQNRRGTTVI 182

Query: 175 FLPSSDIFSVQDFNYDTLQHRL-RELSFLNSSVQISLIDKR------SPEPREITMFYKG 227
           F P + IF  +        +R+ R  ++L   VQI               P E T+ + G
Sbjct: 183 FHPDAQIFGERAQLRPGPLYRMARSKAYLFRGVQIRWKCDPLLIKDGDEIPAEDTLHFPG 242

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKD 284
           G+  F+  + + +  + +   +     + D   ++ A+ W D   E  V  + N +P  +
Sbjct: 243 GLTDFLKAVLKERPLVTKDMFQGTAPLADDMGQVEWALAWPDDDEEGFVNTYCNTVPTPE 302

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH +G R+ LT+ + SY E +         +  +D   G   ++S+ + DP+F  QTK
Sbjct: 303 GGTHEAGFRNLLTKGLRSYGEMAGNK--KAGQITAEDVMVGACVMVSLFIRDPQFQGQTK 360

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           EKL S E   +VE+ V D    WL      A  ++ ++++ +  R   R+A+++  RK  
Sbjct: 361 EKLASPEATRLVENAVKDHFDHWLSGDKASAGALLTRLIEKAEDRARRRQAKEMN-RKTP 419

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
                LPGKLADCS      +ELFLVEGDSAGGSAK GR+RE QAILPLRGKILNV  A 
Sbjct: 420 TKRLRLPGKLADCSRSVNVGTELFLVEGDSAGGSAKSGRNRETQAILPLRGKILNVASAS 479

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            DK+  +QE+  L+ ALG G  +D++D  KLRY KIIIMTDADVDGAHI +LL+TFF+++
Sbjct: 480 TDKLRQNQELKDLMEALGCG-ARDNYDDEKLRYEKIIIMTDADVDGAHIASLLMTFFYQE 538

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           MP LI NG LY+  PPLY +  G+ + Y +D+   E+ L     +++       KG
Sbjct: 539 MPELIRNGHLYLALPPLYRLAHGQIVAYGRDDAHKEELLKTLFANKKNVEISRFKG 594



 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 22/200 (11%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    +L + +  +   +  ++       + ++      V    +    
Sbjct: 472 ILNVASASTDKLRQNQELKDLMEALGCGARDNYDDEKLRYEKIIIMTDADVDGAHIASLL 531

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-------NGDKIKITGPCSLLDTIFSIGRKG 733
             F +    + I +  +      +  L           D  K      LL T+F+  +K 
Sbjct: 532 MTFFYQEMPELIRNGHLYLALPPLYRLAHGQIVAYGRDDAHK----EELLKTLFAN-KKN 586

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI------TDASQADD---LFSRLMGDE 784
           + + R+KGLGEM  +QL ETT++P  R+LLRV I       D  +A D   L   LMG +
Sbjct: 587 VEISRFKGLGEMPPAQLKETTMDPSRRTLLRVTIPSGRTEEDHEEAKDVARLVESLMGRK 646

Query: 785 VEPRREFIQENSLPS-ALDI 803
            E R  FIQE +  +  LD+
Sbjct: 647 PELRFAFIQERARFATDLDV 666


>gi|182678200|ref|YP_001832346.1| DNA topoisomerase IV subunit B [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634083|gb|ACB94857.1| DNA topoisomerase IV, B subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 691

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/584 (40%), Positives = 328/584 (56%), Gaps = 14/584 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y A SI++L+GL+ V++RP MYIG TD E+ LHH+  EVLDNA+DE++ G+A  I V
Sbjct: 46  EAGYTAASIEVLEGLEPVRRRPGMYIGGTD-ETALHHLFAEVLDNAMDEAVAGHATFIDV 104

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           T    G  TV DNGRGIP D H +    SA EVIMT LHAGGKF+  +Y+ SGGLHGVGV
Sbjct: 105 TCETGGFVTVIDNGRGIPVDPHPKFPKKSALEVIMTTLHAGGKFDSGAYQTSGGLHGVGV 164

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SV 184
           SVVNAL+  L++ + R   +Y  +F  G+  + L   G   N  G++V F P   IF   
Sbjct: 165 SVVNALAEVLEVEVARGQILYRQTFARGLPTSKLQEVGKVQNRRGSKVRFKPDPQIFGEQ 224

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDR 238
                  L    R  +FL   V+I               P+E  + + GG++ +++    
Sbjct: 225 AHLKPARLFKMSRAKAFLFKGVEIRWHCAPSLLPHDGSVPQEAVLHFPGGLKDYLTQDIE 284

Query: 239 HKKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            K  + +     RI+    + S++ A+ W       V  F N IP  DGGTH +GLR AL
Sbjct: 285 GKSLVTEQIFAGRIEKEGGHGSLEWAIAWLADDDGFVHSFCNTIPTPDGGTHEAGLRGAL 344

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            R +  + E+   +K+    +  +D      ++LS+ + +P F  Q K +L+++E   +V
Sbjct: 345 LRGLKDHAERIGQTKRA-SILTNEDVMVSTAALLSVFIREPEFQGQNKSRLMTTEASRLV 403

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + D    WL   P  A  ++   ++ +  R   R  +D   RK       LPGKLAD
Sbjct: 404 EGPLRDAFDHWLAASPSHAAKLLDWSVERAEERLRRRAEKD-VARKTATRKLRLPGKLAD 462

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C+    + SE+F+VEGDSAGGSAKQ R R NQA+LPLRGKILNV  A  DK+ ++Q++  
Sbjct: 463 CTNTASQGSEIFIVEGDSAGGSAKQARDRANQAVLPLRGKILNVASATRDKLTANQQLAD 522

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           LI ALG G G   +  + LRY KIIIMTDADVDGAHI +LL+TFF+RQMP L+  G LY+
Sbjct: 523 LIQALGCGTG-SHYRHDDLRYEKIIIMTDADVDGAHIASLLITFFYRQMPKLVEGGHLYL 581

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
             PPLY +T+G    Y ++E   +  +  +   +        KG
Sbjct: 582 AVPPLYRLTQGSKQVYARNEAHRDAIIKKELTGKGKIEISRFKG 625



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 4/180 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   +LA+ +  +   +   +       + ++      V    +    
Sbjct: 503 ILNVASATRDKLTANQQLADLIQALGCGTGSHYRHDDLRYEKIIIMTDADVDGAHIASLL 562

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F +    K +    +      +  L     ++           I     G+  I + R
Sbjct: 563 ITFFYRQMPKLVEGGHLYLAVPPLYRLTQGSKQVYARNEAHRDAIIKKELTGKGKIEISR 622

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM ASQL ETT++P  R+LLRV +   D  +  D   RLMG+  E R  FIQE++
Sbjct: 623 FKGLGEMMASQLKETTMDPAKRNLLRVVVLAEDREETSDSVERLMGNRPEARFAFIQEHA 682


>gi|302830013|ref|XP_002946573.1| hypothetical protein VOLCADRAFT_79115 [Volvox carteri f.
           nagariensis]
 gi|300268319|gb|EFJ52500.1| hypothetical protein VOLCADRAFT_79115 [Volvox carteri f.
           nagariensis]
          Length = 676

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 256/660 (38%), Positives = 359/660 (54%), Gaps = 35/660 (5%)

Query: 16  QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN-MDGSC 74
           Q+L+GL+ V+KRP MYIG T  E GLHH+++EV+DN++DE   G+A  + V ++   G  
Sbjct: 21  QVLEGLEPVRKRPGMYIGGTGSE-GLHHLVWEVVDNSVDEVQAGHATRVEVQVDLSSGWV 79

Query: 75  TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGLHGVGVSVVNALS 132
            V+D+GRGIP D+H   G SA E ++T LHAGGKF      YKVSGGLHGVG+SVVNALS
Sbjct: 80  VVTDDGRGIPVDVHPVTGKSALETVLTVLHAGGKFGGEDSGYKVSGGLHGVGISVVNALS 139

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTG-----SAGNDTGTEVTFLPSSDIF-SVQD 186
             L + + R G  Y   +  G+    +  T         + TGT+V FL    IF S   
Sbjct: 140 EQLTVTVWRAGVRYSQRYSRGVALEEVQRTELQPDSEEADRTGTQVCFLYDRTIFASDVS 199

Query: 187 FNYDTLQHRLRELSFLNSSVQISLI--DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
           +N D +  RL EL+FLNSS  +      K   +       + GG+  FV  L     PL 
Sbjct: 200 YNPDIIATRLHELAFLNSSATMRFNATRKGQLDGEWQVFQFSGGLREFVGCLQSGYTPLH 259

Query: 245 QSPI-RIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++           + +  A++W  D + E +  F N+I   DGGTHL  LRSALTR IT+
Sbjct: 260 EAICVSRSDPPSGVVVHAALQWAADSFREEIRGFANSIHTADGGTHLDALRSALTRTITA 319

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
             +K    K+    + G+  REG  +V+++++P+P F  QTK +L + EVR +VE+ V +
Sbjct: 320 LAKKMKLIKEGDPPLSGEHIREGLGAVIAVQVPNPEFEGQTKTRLGNPEVRKIVEATVAE 379

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +  WLE HP +   ++ K L A+   DAAR+AR+L RRK  L  + LPGKLADC+  + 
Sbjct: 380 AVGEWLEAHPADLSALLGKALTAARAADAARKARELIRRKTSLSRSMLPGKLADCTSEER 439

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++E++LVEGDSAGGSAKQ R R  QA+LPL+GKILNVER     M  + EI +LI ALG
Sbjct: 440 DRTEIYLVEGDSAGGSAKQARDRRFQAVLPLKGKILNVERVAGAAMYKNAEISSLIVALG 499

Query: 483 TGIGQ-------------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            G  +                    L Y KI+I+TDADVDGAHIR LLLTF FR  P L 
Sbjct: 500 LGTDRAPALATRGPDVAVRDTASKALEYGKIVILTDADVDGAHIRALLLTFLFRYRPQLF 559

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           + G +Y+  PPLY + RG+SL +   EE L   +    L+         KG+      + 
Sbjct: 560 YAGHVYVAVPPLYKVERGRSLWWAHTEEELRRVVSENRLAPGGYSVQRFKGLGEMMPQQL 619

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAE 647
           +        +L++           + A    +       ++    +L  + +NRL  I+ 
Sbjct: 620 WDTTLNPATRLLRRLTVR------DAAEADALLTSLMGAQVGPRKALIQEYSNRLQSISS 673



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 8/133 (6%)

Query: 679 GSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR---KGI 734
            + + +F  +Y+ ++F        +  L  +  G  +        L  + S  R    G 
Sbjct: 544 RALLLTFLFRYRPQLFYAGHVYVAVPPLYKVERGRSLWWAHTEEELRRVVSENRLAPGGY 603

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           S+QR+KGLGEM   QLW+TTLNP TR L R+ + DA++AD L + LMG +V PR+  IQE
Sbjct: 604 SVQRFKGLGEMMPQQLWDTTLNPATRLLRRLTVRDAAEADALLTSLMGAQVGPRKALIQE 663

Query: 795 NSLP----SALDI 803
            S      S+LD+
Sbjct: 664 YSNRLQSISSLDV 676


>gi|114704565|ref|ZP_01437473.1| DNA topoisomerase IV subunit B [Fulvimarina pelagi HTCC2506]
 gi|114539350|gb|EAU42470.1| DNA topoisomerase IV subunit B [Fulvimarina pelagi HTCC2506]
          Length = 675

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/595 (38%), Positives = 332/595 (55%), Gaps = 19/595 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A  I++L+GL+ V++RP MY+G TD    LHH+  EV+DN++DE+  G+A+ I V+L
Sbjct: 36  DYTAADIEVLEGLEPVRRRPGMYVGGTDA-KALHHLFAEVIDNSMDEATAGHANFIEVSL 94

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           + DG CTVSDNGRGIP D H      SA E+I+T LHAGGKF+ K Y+ SGGLHGVGVSV
Sbjct: 95  DTDGFCTVSDNGRGIPIDPHPRFKDKSALEIILTTLHAGGKFDSKVYETSGGLHGVGVSV 154

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  L++ + R   +Y   +  G     L   G   N  GT V F P   IF     
Sbjct: 155 VNALSEKLEVEVARNRKLYRQEYARGKAVTELETVGETQNRRGTRVRFRPDPQIFGEHAR 214

Query: 188 NYDTLQHRL-RELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDRHK 240
              T   R+ R  ++L   V+I            SP P   T  + GG++ ++      K
Sbjct: 215 FEPTRLFRMARSKAYLFGGVEIRWQCDPALLGTESPIPARETFHFPGGLKDYLDN-SIGK 273

Query: 241 KPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +       +  +   + +++ A+ W      ++  + N IP  +GGTH +GLR+ L R
Sbjct: 274 DRITSQIFAGRTEKVSGHGAVEWAVAWTPD-DGSIRSYCNTIPTPEGGTHENGLRAVLLR 332

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + ++ E S   +     + GDD     + +LS+ + +P F  QTK++L +SE + +VE 
Sbjct: 333 GLKAFAELSGNKRAS--VITGDDVMSTASGMLSVFIREPEFVGQTKDRLATSEAQRIVEQ 390

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D    WL   P +A  ++  VLD +  R   R+ ++   RK       LPGKLADCS
Sbjct: 391 SIRDSFDIWLASSPQDAARLIDWVLDRADERLRRRQEKE-VSRKSATRKLRLPGKLADCS 449

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           +     +ELF+VEGDSAGGSAKQ R R+ QAILPLRGKILNV  A  +K+ ++Q++  LI
Sbjct: 450 QSGAAGAELFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVASAGREKLGANQQLADLI 509

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG G G   +    LRY ++I+MTDADVDGAHI +LL+TFF+R+MP LI  G LY+  
Sbjct: 510 QALGCGTGSK-YRDADLRYERVIVMTDADVDGAHIASLLITFFYREMPELIRGGHLYLAV 568

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           PPLY +T+G    Y +D+   E  +  +   +        KG+     L   + +
Sbjct: 569 PPLYKLTQGGKTAYARDDRHRERLVEREFKGKGKVEVSRFKGL--GEMLPGQLKE 621



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    +LA+ +  +   +   +  +    + ++      V    +    
Sbjct: 488 ILNVASAGREKLGANQQLADLIQALGCGTGSKYRDADLRYERVIVMTDADVDGAHIASLL 547

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737
             F +    + I    +      +  L   G             L++  F  G+  + + 
Sbjct: 548 ITFFYREMPELIRGGHLYLAVPPLYKLTQGGKTAYARDDRHRERLVEREFK-GKGKVEVS 606

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA--DDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM   QL ETT++P  R+LL+V + +A +A        LMG++ + R  FIQE 
Sbjct: 607 RFKGLGEMLPGQLKETTMDPKKRTLLQVVMDEAPEAGTSGAVDALMGNKPDLRFRFIQER 666

Query: 796 SLPS-ALDI 803
           S     LDI
Sbjct: 667 SAFVDDLDI 675


>gi|296535763|ref|ZP_06897924.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
           cervicalis ATCC 49957]
 gi|296263831|gb|EFH10295.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
           cervicalis ATCC 49957]
          Length = 691

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/628 (37%), Positives = 340/628 (54%), Gaps = 17/628 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +     +SY A  I++L+GL+ V++RP MYIG TD E+ LHH+  EV+DNA+DE++ G+A
Sbjct: 44  AKAQAGASYSAKDIEVLEGLEPVRRRPGMYIGGTD-ENALHHLAAEVIDNAMDEAVAGHA 102

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           D I VTL  D   TV DNGRGIPTD H +   +SA EVI+T LH+GGKF+ K+Y  SGGL
Sbjct: 103 DRIEVTLEKDNWLTVRDNGRGIPTDPHPKFPKLSALEVILTTLHSGGKFSGKAYDTSGGL 162

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L++ + R+  ++  ++  G   + L   G+  N  GT + F P  +
Sbjct: 163 HGVGSSVVNALSERLEVEVARDRTLFTQAYSRGKPLSKLKNAGAVHNRRGTTIRFKPDPE 222

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYL 236
           IF  Q F    L    R  ++L   V+I             P + T+ + GG+  F++  
Sbjct: 223 IFGTQPFLAARLFRLCRSKAYLFRGVEIRWSCDPALVKDDTPSQATLHFPGGLSDFLAAA 282

Query: 237 DRHKKPLMQSPIRIQGSRDNIS--IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
             ++ P++ +P   + +    +   + A+ W +     +  + N IP   GGTH +GLR+
Sbjct: 283 VENRAPVIPAPWAGESTFPQGAGRCEWAVTWLEQGEGFLHTYANTIPTPQGGTHEAGLRA 342

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           AL + + +Y E     +    ++  +D   G   +LS+ + +P+F  QTK+KL S E   
Sbjct: 343 ALVKGLRAYGELKKEKRAA--AITAEDVFGGLAGMLSVFIREPQFQGQTKDKLTSPEAAK 400

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE  + D    WL   P  A  ++   ++ +  R   R  +D T RK       LPGKL
Sbjct: 401 LVEQGLRDHFDHWLAGDPAMAGNLLTWAIERAEERLRRREQKD-TPRKSATRRLRLPGKL 459

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+      +ELFLVEGDSAGGSAKQ R RE QA+LPLRGKILNV  A  DK+  +QE+
Sbjct: 460 ADCAREAADGTELFLVEGDSAGGSAKQARDRETQAVLPLRGKILNVASASADKLRQNQEL 519

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             LI ALG G G D FD+ +LRY +++IMTDADVDGAHI  LL+TFF++++P L+  G +
Sbjct: 520 KDLIEALGCGAG-DKFDLARLRYGRVVIMTDADVDGAHIAALLMTFFYKELPELVRQGRV 578

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLED-----YLINQSLSEEIELFCDSKGVISKNDLRN 589
           Y+ +PPLY +       Y  D+   E      +   Q +              S  +   
Sbjct: 579 YLAQPPLYRLATPGKTLYAMDDAEREKLLKKAFKPGQKVEVSRFKGLGEMPPASLKETTM 638

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAV 617
                  +  ++           IE  +
Sbjct: 639 DPRKRTLLRVVLPPEERARTSELIEALM 666



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 3/77 (3%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSR 779
           LL   F  G+K + + R+KGLGEM  + L ETT++P  R+LLRV +   + ++  +L   
Sbjct: 606 LLKKAFKPGQK-VEVSRFKGLGEMPPASLKETTMDPRKRTLLRVVLPPEERARTSELIEA 664

Query: 780 LMGDEVEPRREFIQENS 796
           LMG + E R +FIQ+N+
Sbjct: 665 LMGRKPELRFKFIQDNA 681


>gi|19909737|dbj|BAB87064.1| DNA gyrase subunit B [bacterium SD212]
          Length = 479

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 313/479 (65%), Positives = 384/479 (80%), Gaps = 10/479 (2%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+AD++ V LN DGS TV+DNGRGIPTD+H EEG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADLVQVILNADGSVTVTDNGRGIPTDIHAEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+L+I R+G  ++M F  G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELKIYRDGKQHQMRFERG 120

Query: 154 ILDNPLVVTGSAGNDT----------GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
                L VTG+A   T          GTEVTF PS   FS  DF++ TL+HRLREL+FLN
Sbjct: 121 DTVKSLEVTGTAPIRTTGDKAGQPQSGTEVTFFPSITTFSHIDFDFKTLEHRLRELAFLN 180

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L D R  EP ++T+ Y+GG+EAFV +LD+ K+PL++  I I+G ++ I +DLA+
Sbjct: 181 SGVVIRLADMRHAEPIDVTLHYEGGVEAFVRHLDKSKQPLLKDVIVIRGKKEGIELDLAL 240

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE +LCFTNNIPQ+DGGTHLS  R++LTR +  Y+E S  +KK+K +  G+D R
Sbjct: 241 WWNDSYHETMLCFTNNIPQRDGGTHLSAFRASLTRVMGGYIESSGLAKKEKVAPTGEDAR 300

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+  ++GLS W EEHP+EAK+IV K++
Sbjct: 301 EGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEALCSEGLSTWFEEHPVEAKMIVAKII 360

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+ARDLTRRK  L+I+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R
Sbjct: 361 EAASAREAARKARDLTRRKSALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQAR 420

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +RENQA+LPLRGKILNVERARFD+MLSS  IGTLI ALGTGIG+D F+ +KLRYHKII+
Sbjct: 421 NRENQAVLPLRGKILNVERARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 479


>gi|114767592|ref|ZP_01446327.1| DNA topoisomerase IV subunit B [Pelagibaca bermudensis HTCC2601]
 gi|114540370|gb|EAU43459.1| DNA topoisomerase IV subunit B [Roseovarius sp. HTCC2601]
          Length = 652

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/655 (36%), Positives = 343/655 (52%), Gaps = 22/655 (3%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D+         YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE+
Sbjct: 1   MADDLLAATDTPDYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I V L+ D + T+ DNGRGIP D H +  G SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGHANRIEVELHGDYAVTIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGKAYE 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ R   ++E  F  GI    +   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGASVVNALSDSMVVQVARNKELFEQRFSRGIPQGGVEKVGAAPNRRGTTVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
                IF    F    L   +R  ++L S V+I        +  P E T  + GG+  ++
Sbjct: 180 HADEQIFGSHRFKPARLFKMVRSKAYLFSGVEIRWKSAIDDNETPLEATFHFPGGLSDYL 239

Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +          + P        +       ++ A+ W       +  + N +P  +GGTH
Sbjct: 240 TETLGTASTYSEKPFAGTVDFKEKFNTPGKVEWAISWTPSRDGFIQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G  +A+ + I +Y E      +    +  DD   G  +++S  + +P F  QTK++L 
Sbjct: 300 EAGFWAAILKGIRAYGELVN--NRKASQITRDDLITGGCALVSCFIREPEFVGQTKDRLA 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E + +VE  V D    WL      A  I+  ++         RR    T RK      
Sbjct: 358 TTEAQRLVEGAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETARKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ ++ + +ELF+VEGDSAGGSAK  R RE+QA+LPL+GKILNV  A  +K+
Sbjct: 417 RLPGKLTDCTNKNREGTELFIVEGDSAGGSAKGARFRESQALLPLKGKILNVLGAASNKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+ EI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI  LL+TFF+ QM  L
Sbjct: 477 TSNAEIRDLCEALGVGLG-TKFNVDDLRYEKIIIMTDADVDGAHIAALLMTFFYTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPLY +T+G    YV D+   E+ L      +           G +   D
Sbjct: 536 IDGGHLYMACPPLYRLTQGARRIYVADDAEKEEMLKKGLGGKGKIDVQRFKGLGEMDAKD 595

Query: 587 LRNFIDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+    D      I   I +  P      +E+ +           + N     +L
Sbjct: 596 LKETTMDPATRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENARFVEEL 650



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREF 791
           I +QR+KGLGEM+A  L ETT++P TR L+RV I +    +  DL  RLMG + E R ++
Sbjct: 580 IDVQRFKGLGEMDAKDLKETTMDPATRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQY 639

Query: 792 IQENSLPS-ALDI 803
           IQEN+     LD+
Sbjct: 640 IQENARFVEELDV 652


>gi|19909743|dbj|BAB87067.1| DNA gyrase subunit B [bacterium MBIC3367]
          Length = 461

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 319/461 (69%), Positives = 378/461 (81%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
           SGLHHM+YEV+DNAIDE+L G+AD +TVTLN DGS TVSDNGRGIPTDLH EEG+SAAEV
Sbjct: 1   SGLHHMVYEVVDNAIDEALAGHADHVTVTLNPDGSVTVSDNGRGIPTDLHPEEGVSAAEV 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS+ L+LRI R    + M+F +G    P
Sbjct: 61  IMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSTKLELRIWRNDQEHFMTFAHGDAVGP 120

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L V G A    GTEVTFLPS + F+  +F++ TL+HRLREL+FLNS  +I L DKR  E 
Sbjct: 121 LEVVGPANGKKGTEVTFLPSPETFTKTEFDFATLEHRLRELAFLNSGARIILTDKRGVED 180

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
               +FY+GG+EAFV YLDR K PL+++PI ++  +D I+++ AM WND YHE VLCFTN
Sbjct: 181 VVEELFYEGGLEAFVRYLDRAKHPLIETPIAVRAEKDGITVEAAMWWNDSYHEQVLCFTN 240

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+G R ALTRQ+T Y E +   KK+K S+ GDDCREG T VLS+K+PDP+
Sbjct: 241 NIPQRDGGTHLAGFRGALTRQVTGYAEATGLMKKEKVSLSGDDCREGLTCVLSVKVPDPK 300

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR VVE+ ++  LS WLEE+P  AK IV KV++A+  R+AAR+AR+L
Sbjct: 301 FSSQTKDKLVSSEVRPVVENLISQTLSEWLEENPAPAKTIVSKVVEAASAREAARKAREL 360

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKG LD+ASLPGKLADC ERD  K+ELFLVEGDSAGGSAKQGR RENQA+LPLRGKIL
Sbjct: 361 TRRKGALDVASLPGKLADCQERDASKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKIL 420

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           NVERARFDKMLSS EIGTLITALGTGIG++ F+I KLRYHK
Sbjct: 421 NVERARFDKMLSSNEIGTLITALGTGIGKEEFNIEKLRYHK 461


>gi|161620653|ref|YP_001594539.1| DNA topoisomerase IV subunit B [Brucella canis ATCC 23365]
 gi|254702966|ref|ZP_05164794.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686]
 gi|260568121|ref|ZP_05838590.1| DNA topoisomerase IV subunit B [Brucella suis bv. 4 str. 40]
 gi|261753574|ref|ZP_05997283.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686]
 gi|161337464|gb|ABX63768.1| DNA topoisomerase IV, B subunit [Brucella canis ATCC 23365]
 gi|260154786|gb|EEW89867.1| DNA topoisomerase IV subunit B [Brucella suis bv. 4 str. 40]
 gi|261743327|gb|EEY31253.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686]
          Length = 699

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/564 (41%), Positives = 336/564 (59%), Gaps = 16/564 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y+A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I VT
Sbjct: 58  DDYNASSIRVLEGLEPVRLRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVT 116

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           ++ +G  TVSDNGRGIP D H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 117 VDKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 176

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALS  L++ + R   +Y   F  GI    L   G   N  GT V F P  +IF    
Sbjct: 177 VVNALSDVLEVEVARNRRLYRQCFSRGIPQRGLEELGEVHNRRGTRVRFHPDPEIFGKNA 236

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I      S        P +    + GG++ ++      
Sbjct: 237 HFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 296

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    V  + N IP  DGGTH +GLR ALT
Sbjct: 297 EHQVTREVFAGRTEKQGGHGAVEWAVAWFGG-DGFVHSYCNTIPTGDGGTHEAGLRIALT 355

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 356 RGLKAYAELTNNKRAS--IITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVE 413

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P EA  +++ V+D +  R   R+ ++ T RK       LPGKLADC
Sbjct: 414 NAIRDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKE-TVRKSATRKLRLPGKLADC 472

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 473 TQNAAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADL 532

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  + ++  + LRY ++I+MTDADVDGAHI +LL+TFF+++MP LI NG LY+ 
Sbjct: 533 VQALGCGT-RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLA 591

Query: 538 KPPLYGITRGKSLQYVKDEESLED 561
            PPLY +++G    Y +D+   E+
Sbjct: 592 VPPLYRLSQGGKTAYARDDAHKEE 615



 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++A+ +  +   + K++       D ++      V    +    
Sbjct: 512 ILNVASAGREKLTANQQIADLVQALGCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLL 571

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L   G             LL T+F+ GR  I + 
Sbjct: 572 ITFFYQEMPELIRNGHLYLAVPPLYRLSQGGKTAYARDDAHKEELLRTVFT-GRGKIEIG 630

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM A QL ETT++P  R+LLRV++ +    +  +    LMG + E R  FIQ+ 
Sbjct: 631 RFKGLGEMRADQLKETTMDPAKRTLLRVQVDEEYGDETRNTVDDLMGTKPEARFRFIQDR 690

Query: 796 SLPS-ALDI 803
           +     LDI
Sbjct: 691 AAFVEELDI 699


>gi|150396283|ref|YP_001326750.1| DNA topoisomerase IV subunit B [Sinorhizobium medicae WSM419]
 gi|150027798|gb|ABR59915.1| DNA topoisomerase IV, B subunit [Sinorhizobium medicae WSM419]
          Length = 686

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/596 (38%), Positives = 340/596 (57%), Gaps = 18/596 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I V 
Sbjct: 45  SDYDASAIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIDVN 103

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ DG  TV+DNGRGIP + H +  G S  EV+MT LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 104 LDADGFLTVTDNGRGIPVENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLHGVGVS 163

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185
           VVNALS  L++ + R   +Y   F  G+    L   G   N  GT V F P   IF    
Sbjct: 164 VVNALSDDLEVEVARNRRLYRQRFSRGVAQGGLEDLGDVHNRRGTRVRFHPDPQIFGPHA 223

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDRH 239
            F    L    R  ++L   V+I          + S  P      + GG++ +++     
Sbjct: 224 RFEPARLFRMARSKAYLFGGVEIRWSCDPSLLPEGSEIPDRAVFHFPGGLKDYLAATLGK 283

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + S++ A+ W  G  + +  + N IP  +GGTH +GLR ALT
Sbjct: 284 EFTVTREIFAGKSEKSNGHGSLEWAVTWYGG-DQQIHSYCNTIPTPEGGTHEAGLRIALT 342

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + + +Y E +   +     V  DD       +LS+ + +P F  QTK++L + E + +VE
Sbjct: 343 KGLKNYAELTQNKRAA--IVTTDDVMISAAGMLSVFIREPEFVGQTKDRLATVEAQRIVE 400

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    +L ++P EA  ++  V++        RR      RK  +    LPGKLADC
Sbjct: 401 NALRDPFDHYLADNPAEAAKLLDWVVER-AEERVRRRKEKEVSRKTAVRKLRLPGKLADC 459

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+IG L
Sbjct: 460 AQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQIGDL 519

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALG G  +  +    LRY +I+IMTDADVDGAHI +LL+TFF+++MP LI  G L++ 
Sbjct: 520 IQALGCGT-RSKYREEDLRYERIVIMTDADVDGAHIASLLITFFYQEMPELIRGGHLFLA 578

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
            PPLY +++G    Y +D+   E+ +  +            KG+     L   + +
Sbjct: 579 VPPLYRLSQGSKTLYARDDAHREELMQTEFSGRGKVEIGRFKGL--GEMLPAQLKE 632



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    ++ + +  +   +   +       + +V      V    +    
Sbjct: 499 ILNVASAGREKLGANQQIGDLIQALGCGTRSKYREEDLRYERIVIMTDADVDGAHIASLL 558

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP---CSLLDTIFSIGRKG-ISM 736
             F +    + I    +      +  L      +          L+ T      +G + +
Sbjct: 559 ITFFYQEMPELIRGGHLFLAVPPLYRLSQGSKTLYARDDAHREELMQT--EFSGRGKVEI 616

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQE 794
            R+KGLGEM  +QL ETT++P  R+LL+V+I D       D    LMG + E R  FIQE
Sbjct: 617 GRFKGLGEMLPAQLKETTMDPAKRTLLKVEIDDVDFEGTRDAVDSLMGTKAEARFRFIQE 676

Query: 795 NSLPS-ALDI 803
            ++ +  LDI
Sbjct: 677 RAVFAENLDI 686


>gi|149203080|ref|ZP_01880051.1| DNA topoisomerase IV subunit B [Roseovarius sp. TM1035]
 gi|149143626|gb|EDM31662.1| DNA topoisomerase IV subunit B [Roseovarius sp. TM1035]
          Length = 651

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/647 (36%), Positives = 325/647 (50%), Gaps = 18/647 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S YDA SIQ+L+ ++ V+ RP MYIG  D    LHHM+ E++DN++DE++ G+A  I
Sbjct: 8   TPKSDYDASSIQVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIIDNSMDEAVAGHATWI 66

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
            V L+ +G  +V DNGRGIP D H +    SA E+I   L+AGGKF+  SY+ SGGLHGV
Sbjct: 67  EVELHANGHVSVRDNGRGIPVDPHPKDPKKSALEIIFCTLNAGGKFSGDSYQTSGGLHGV 126

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS  L++ + R   +Y M F  G    PL   G+A N  GT VTF P  +IF 
Sbjct: 127 GSSVVNALSDHLRVEVARNRELYMMEFSRGTPQAPLAKIGAAPNRRGTSVTFHPDPEIFG 186

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVSYLDRHKK 241
                   L    R  ++L S V+I    +      P+E T  + GG+  ++        
Sbjct: 187 SLTLKPARLFKMARSKAYLFSGVEIRWKTEISDGDTPQEATFKFPGGLADYLGEALGGAT 246

Query: 242 PLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
              + P                ++ A+ W       +  + N +P  +GGTH +G  +A+
Sbjct: 247 TYAERPFAGTVDFRDKYNVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEAGFWAAI 306

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + I +Y E S    +    +  +D   G  +++S  + +P F  QTK++L +++   +V
Sbjct: 307 LKGIKAYGELSN--NRKAAQITREDLLAGGCALVSCFIREPEFVGQTKDRLATTDAARMV 364

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  V D    WL      A  I+  ++         RR    T+RK       LPGKL D
Sbjct: 365 EGAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETQRKTATKKLRLPGKLVD 423

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS      +ELF+VEGDSAGGSAK  R R+ QA+LPLRGKILNV  A   K+ S+QEI  
Sbjct: 424 CSSSTRDGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNQEISD 483

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L  ALG  +G   F+++ LRY KIIIMTDADVDGAHI  LL+TFFF QM  +I  G LY+
Sbjct: 484 LTQALGVSLGSK-FNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLYL 542

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDD- 593
             PPLY +T+G    Y  DE   + +L      +           G +   DL+    D 
Sbjct: 543 ACPPLYRLTQGSKRVYCLDEAERDLWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDP 602

Query: 594 --ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                I   I +  P      +E+ +             N     +L
Sbjct: 603 GSRKLIRVTIDEDEPGQTGDLVERLMGKKPELRFQYISENARFVEEL 649



 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I +  +      +  L     ++     
Sbjct: 503 YDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLYLACPPLYRLTQGSKRVYCLDE 562

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I + R+KGLGEM+A  L ETT++P +R L+RV I +    Q  D
Sbjct: 563 AERDLWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPGSRKLIRVTIDEDEPGQTGD 622

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++I EN+     LD+
Sbjct: 623 LVERLMGKKPELRFQYISENARFVEELDV 651


>gi|167646829|ref|YP_001684492.1| DNA topoisomerase IV subunit B [Caulobacter sp. K31]
 gi|167349259|gb|ABZ71994.1| DNA topoisomerase IV, B subunit [Caulobacter sp. K31]
          Length = 707

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/645 (37%), Positives = 342/645 (53%), Gaps = 22/645 (3%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YDA SI++L+GL+ V+ RP MYIG TD E  LHH+  EVLDN++DE++ G+A  I V L+
Sbjct: 67  YDASSIEVLEGLEPVRMRPGMYIGGTD-ERALHHLFAEVLDNSMDEAVAGFAKTIEVRLD 125

Query: 70  MDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
            DG  +V D+GRG+P D H +  G SA EVIMT LHAGGKF+ K+Y+ SGGLHGVG SVV
Sbjct: 126 ADGYLSVKDDGRGMPVDEHPKHPGKSALEVIMTVLHAGGKFSGKAYETSGGLHGVGASVV 185

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDF 187
           NALS  +++ + R+G  +  SF  G    P+     +    GT V F P   IF     F
Sbjct: 186 NALSELVEVTVWRDGFEHLQSFARGKPLGPVQKIAPSK-KRGTMVRFKPDDQIFGDNVAF 244

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPL 243
               L    R  ++L   VQI             P E T  +  G+  F++   +  + +
Sbjct: 245 KPARLYRMARSKAYLFRGVQIKWSCDPSRILDQTPAEATFHFPNGLADFLAERTKGLELV 304

Query: 244 MQSPIRIQGSRD------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
                  +  R         +I    R    +   +  + N +P  +GGTH SGLR+ LT
Sbjct: 305 TPDSFSGRIERQGEAGAVEWAIAWTPRGFGEHDGFMQSYCNTVPTPEGGTHESGLRAVLT 364

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E     +     +  DD      +++S+ + +P F  QTKEKL SSE +  VE
Sbjct: 365 RGLKAYAELKNEKRAA--IITADDVIAQAGALISVFIKNPEFQGQTKEKLSSSEAQRFVE 422

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    WL   P  A+ +++ V++ +  R   R+ ++  +R        LPGKLADC
Sbjct: 423 NALRDPFDHWLTGSPKAAQALLEFVIERAEERLKRRKDKE-VQRASATRKLRLPGKLADC 481

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           +      +ELF+VEGDSAGGSAKQ R+R+NQAILPLRGKILNV  A  +K  +++E+  L
Sbjct: 482 AAGAVDGAELFIVEGDSAGGSAKQARNRKNQAILPLRGKILNVASASGEKFTANKELSDL 541

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG   G   +    LRY +IIIMTDADVDGAHI +LL+TFF+R MP LI  G L++ 
Sbjct: 542 MLALGAQ-GGARYKEEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPDLIRQGHLFLA 600

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQS--LSEEIELFCDSKGVISKNDLRNFIDDAL 595
            PPLY I+ G    Y +D+E  ++ L         EI  F     +++       +D A+
Sbjct: 601 LPPLYRISHGGKSAYARDDEHKDELLATMFKGKKPEIGRFKGLGEMMASQLKETTMDPAV 660

Query: 596 K-IDKLIKDFYPNHDKTFIEQAV-ISGVFNCESDQEINVSLASKL 638
           + + K+         +  +E  +           QE     A  L
Sbjct: 661 RTLAKITLPRSEEAVEALVETLMGRKPELRFRFIQENAEFAADDL 705



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 12/190 (6%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S      +   +L++ +  +  +    +       + ++      V    +    
Sbjct: 521 ILNVASASGEKFTANKELSDLMLALGAQGGARYKEEDLRYERIIIMTDADVDGAHIASLL 580

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F + +    I    +      +  +   G             LL T+F  G+K   + 
Sbjct: 581 ITFFYRTMPDLIRQGHLFLALPPLYRISHGGKSAYARDDEHKDELLATMFK-GKK-PEIG 638

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI---TDASQADDLFSRLMGDEVEPRREFIQE 794
           R+KGLGEM ASQL ETT++P  R+L ++ +    +A +A  L   LMG + E R  FIQE
Sbjct: 639 RFKGLGEMMASQLKETTMDPAVRTLAKITLPRSEEAVEA--LVETLMGRKPELRFRFIQE 696

Query: 795 NSLPSA--LD 802
           N+  +A  LD
Sbjct: 697 NAEFAADDLD 706


>gi|320334068|ref|YP_004170779.1| DNA topoisomerase [Deinococcus maricopensis DSM 21211]
 gi|319755357|gb|ADV67114.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus maricopensis DSM
           21211]
          Length = 653

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 271/604 (44%), Positives = 375/604 (62%), Gaps = 21/604 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYI-GDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +  + Y AD I ILKGL+AV+KRP MY+ G T G  G H ++ E++DN IDE L G+AD 
Sbjct: 1   MSQTEYTADQISILKGLEAVRKRPGMYVQGGT-GIDGYHQLLTEIIDNGIDEGLAGFADT 59

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V ++ DGS TV DNGRGIP D+ K EG  A EVI   LHAGGKF Q +YKVSGGLHGV
Sbjct: 60  IQVIMHADGSATVIDNGRGIPVDIMKSEGRPAIEVIFMELHAGGKFGQGAYKVSGGLHGV 119

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDI 181
           G SVVNALSS+L + + + G ++ + F  G L  PL V G      D  T+V+F P   +
Sbjct: 120 GSSVVNALSSYLDVTVNKHGKLHNVRFERGELTTPLRVVGPTPADVDWSTKVSFHPDPAV 179

Query: 182 FS--VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----EPREITMFYKGGIEAFVSY 235
           FS     F+YD ++ RLREL++L + ++I L D+R+     + RE     KGGI  F   
Sbjct: 180 FSEFENKFDYDRIRRRLRELAYL-TGLKIVLRDERTDLHAGQVREEIFHEKGGIANFARA 238

Query: 236 LDRHKKP-LMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLR 293
           L       L   PI ++G+  ++ +++A    + Y  +N+L + N I  +DGGT L+G +
Sbjct: 239 LVTDDTKLLYAEPIVMRGTHSDVEVEVAFIHANTYSADNILTYANMIRTRDGGTPLTGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A TR +  Y ++    K       G+D  EG   V+S+K+ +P+F SQ K KL++SE +
Sbjct: 299 TAYTRILNKYAKEKNLVKSGNPVPSGEDLLEGIYCVVSVKLGEPQFESQAKVKLLNSEAQ 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + V + V +  + +LEE+P   KIIV+K  +A+  R+AAR+ARD+ RR   L+   LPGK
Sbjct: 359 TAVNAIVGEKFAEFLEENPKIGKIIVEKAAEAARAREAARKARDIVRRSNPLENDDLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS +DP +SELF+VEG+SAGGSAK GR R  QAILPLRGKILNVE+A  +K+L + E
Sbjct: 419 LADCSSQDPSESELFIVEGNSAGGSAKSGRERRFQAILPLRGKILNVEKAELNKILKNAE 478

Query: 474 IGTLITALGTGIGQD----SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           I  LI A+G G+        FD++ LRYHK+IIMTDAD+DG HI TLLLTFFFR M  ++
Sbjct: 479 IRALIGAIGAGVEGTGDNMHFDLSNLRYHKVIIMTDADMDGGHIATLLLTFFFRYMRPVV 538

Query: 530 HNGFLYIIKPPLYG--ITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKN 585
             G+LYI +PPLY   + R K   Y+ +E+ L       +   +          G ++ +
Sbjct: 539 EQGYLYIAQPPLYRLTVGREKKGTYLYNEDDLRVLTKQATRDGKKFEIQRFKGLGEMNAD 598

Query: 586 DLRN 589
            L +
Sbjct: 599 QLWD 602



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 54/75 (72%), Gaps = 1/75 (1%)

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788
            G+K   +QR+KGLGEMNA QLW+TT+NP+TR+L RV I D   A++ F  LMG EV PR
Sbjct: 580 DGKK-FEIQRFKGLGEMNADQLWDTTMNPETRTLKRVSIEDLISANETFEALMGSEVAPR 638

Query: 789 REFIQENSLPSALDI 803
           + FIQEN+  + + I
Sbjct: 639 KLFIQENARFAEISI 653


>gi|319783876|ref|YP_004143352.1| DNA topoisomerase IV, subunit beta [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169764|gb|ADV13302.1| DNA topoisomerase IV, B subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 685

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/570 (38%), Positives = 321/570 (56%), Gaps = 17/570 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S    +  Y A  I++L+GL+ V++RP MYIG TD    +HH+  EV+DN++DE++ G+A
Sbjct: 38  STKDGSEGYSAADIEVLEGLEPVRRRPGMYIGGTDD-KAMHHLFAEVIDNSMDEAVAGHA 96

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V L+ DG   V+DNGRGIP D H +    A EVIMT LH+GGKF+ K Y+ SGGLH
Sbjct: 97  TFIDVELSADGYLAVTDNGRGIPIDPHPKFKKPALEVIMTTLHSGGKFDSKVYETSGGLH 156

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ + R   +Y   F  G+    L   G   N  GT++ F P   I
Sbjct: 157 GVGVSVVNALSDHLEVEVARGRQLYRQKFSRGVPVTGLEQLGEVHNRRGTKIRFHPDEQI 216

Query: 182 FSV-QDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVS 234
           F     F    L    R  ++L   V+I          ++   P +    + GG++ ++ 
Sbjct: 217 FGKGAAFEPARLYRMTRSKAYLFGGVEIRWTCDPSLIKEKDQTPAKAEFHFPGGLKDYLK 276

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
                   + +     +  +   + S++ A+ W  G    +  + N IP  +GGTH +G 
Sbjct: 277 ASLGDDFQVTREIFAGKSEKQGGHGSLEWAVTWFGG-DGFINSYCNTIPTGEGGTHEAGF 335

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ LTR + +Y +     +     V  +D       +LS+ + +P F  QTK++L + E 
Sbjct: 336 RNVLTRGLRAYADLVGNKRAS--IVTSEDVMISAAGMLSVFIREPEFVGQTKDRLATIEA 393

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA-ARRARDLTRRKGVLDIASLP 411
             +VE+ + D    WL ++P EA  +++ V   +   +   RR      RK  +    LP
Sbjct: 394 IRIVETAIRDPFDHWLADNPQEASKLLEWV--IARADERVRRRQEKEVSRKSAVRKLRLP 451

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC++     +ELF+VEGDSAGGSAKQ R R +QA+LPLRGKILNV  A  DK+ ++
Sbjct: 452 GKLADCTQNAAAGAELFIVEGDSAGGSAKQARDRASQAVLPLRGKILNVASAGNDKLAAN 511

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           Q+I  LI ALG G  +  +    LRY ++IIMTDADVDGAHI +LL+TFF+++MP+L+  
Sbjct: 512 QQISDLIQALGCGT-RSKYRDEDLRYDRVIIMTDADVDGAHIASLLITFFYQEMPALVRG 570

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           G LY+  PPLY I +G  + Y +D+   ++
Sbjct: 571 GHLYLAVPPLYSIRQGGKVAYARDDAHKDE 600



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 6/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++++ +  +   +   +       D ++      V    +    
Sbjct: 497 ILNVASAGNDKLAANQQISDLIQALGCGTRSKYRDEDLRYDRVIIMTDADVDGAHIASLL 556

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F +      +    +      + S+   G            + + +   GR  + + R
Sbjct: 557 ITFFYQEMPALVRGGHLYLAVPPLYSIRQGGKVAYARDDAHKDELLRTEFTGRGKVELGR 616

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA-DDLFSRLMGDEVEPRREFIQENSL 797
           +KGLGEM A+QL ETT++P  R+LLR+ + DA  A  D    LMG + E R  FIQE + 
Sbjct: 617 FKGLGEMMAAQLKETTMDPRKRTLLRIDVIDAETATKDAVDALMGTKPEARFRFIQERAE 676

Query: 798 PSA---LDI 803
            +    LDI
Sbjct: 677 FAETEVLDI 685


>gi|154253688|ref|YP_001414512.1| DNA topoisomerase IV subunit B [Parvibaculum lavamentivorans DS-1]
 gi|154157638|gb|ABS64855.1| DNA topoisomerase IV, B subunit [Parvibaculum lavamentivorans DS-1]
          Length = 679

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/618 (39%), Positives = 347/618 (56%), Gaps = 22/618 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EVLDN++DE++ G+A+ I VT+
Sbjct: 38  TYSAKDIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVLDNSMDEAVAGHANWIEVTV 96

Query: 69  NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           + DGS TV+DNGRGIP D H + +  SA EVI+T LH+GGKF  K+Y+ SGGLHGVGVSV
Sbjct: 97  SEDGSLTVADNGRGIPVDPHPKFKNKSALEVILTTLHSGGKFGGKAYETSGGLHGVGVSV 156

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QD 186
           VNALS   ++ + R+  +Y  S+  G+    L   G   N  GT++TF P +DIF     
Sbjct: 157 VNALSDRFEVEVARDQTLYTQSYARGVPTTKLTDKGRTQNRRGTKITFHPDADIFGKGAH 216

Query: 187 FNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F    L    R  ++L   V+I          ++   P    + + GG+  ++       
Sbjct: 217 FIPKRLYKMARSKAYLFGGVEIRWNCAPSLIGEKDDTPVNDVLHFPGGLVDYLKASINGY 276

Query: 241 KPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +   P   + SR   + S++ A+ W  G    +  + N +P  +GGTH +GLR+ALT+
Sbjct: 277 DTVTAEPFTGKVSRAGSHGSVEWAIAWFGGGDGFLNSYCNTVPTAEGGTHEAGLRAALTK 336

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y +     K  +  +  +D      ++LS+ + +P F  QTKEKL S+E + +VE 
Sbjct: 337 GLKAYADMVGNKKAAQ--IQAEDVLGTAGAMLSVFIREPEFQGQTKEKLASAEAQRLVER 394

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D    WL   P +A  ++  V+D +  R   R+ +D   RK       LPGKLADCS
Sbjct: 395 AIGDHFDHWLTAAPQQANKLLDWVIDRADDRLRRRQEKD-VARKSATRKLRLPGKLADCS 453

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           +     SE+FLVEGDSAGGSAKQ R R +QAILPLRGKILNV  A   K+  SQ+I  LI
Sbjct: 454 QSAADGSEIFLVEGDSAGGSAKQARDRASQAILPLRGKILNVASASGAKLAQSQQISDLI 513

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG   G   +    LRY K+IIMTDADVDGAHI +LL+TFF+R++P LI  G LY+  
Sbjct: 514 QALGVRTG-SHYRQADLRYDKVIIMTDADVDGAHIASLLITFFYRELPELIREGHLYMAV 572

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY +T+G    Y +D+   ++ L       + E     K  IS+      +  A   +
Sbjct: 573 PPLYKLTQGGKTLYARDDAHKDELL-------KAEFSGRGKVEISRFKGLGEMMPAQLKE 625

Query: 599 KLIKDFYPNHDKTFIEQA 616
             +        +  + +A
Sbjct: 626 TTMARGKRTLMRVVVPEA 643



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 9/190 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++ + ++++ +  +  ++   +  +    D ++      V    +    
Sbjct: 492 ILNVASASGAKLAQSQQISDLIQALGVRTGSHYRQADLRYDKVIIMTDADVDGAHIASLL 551

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKG-ISM 736
             F +    + I    +      +  L   G  +          LL        +G + +
Sbjct: 552 ITFFYRELPELIREGHLYMAVPPLYKLTQGGKTLYARDDAHKDELLKA--EFSGRGKVEI 609

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQE 794
            R+KGLGEM  +QL ETT+    R+L+RV + +A   +      RLMG++ E R +FIQE
Sbjct: 610 SRFKGLGEMMPAQLKETTMARGKRTLMRVVVPEAEAKETSGAIERLMGNKPELRFQFIQE 669

Query: 795 NSLPS-ALDI 803
           ++  +  LDI
Sbjct: 670 HAAFAHDLDI 679


>gi|95020421|gb|ABF50735.1| DNA gyrase subunit B [Mesoplasma entomophilum]
 gi|95020423|gb|ABF50736.1| DNA gyrase subunit B [Mesoplasma entomophilum]
 gi|95020425|gb|ABF50737.1| DNA gyrase subunit B [Mesoplasma entomophilum]
          Length = 553

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/533 (45%), Positives = 343/533 (64%), Gaps = 7/533 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T    GLHH+++E++DN++DE++ G+A+ I +T+  +G   V DNGRGIP  +  + G
Sbjct: 1   GSTSKA-GLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGIQADSG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + +KREG I+   F  
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQVFSG 119

Query: 153 GIL-DNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISL 210
           G      + + G   N+TGT V F P  +IF    +F+Y+T+++++++LS+LN  + I L
Sbjct: 120 GGTQQTEIEIIGET-NETGTTVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIEL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D R  +  E       GI  +V   +  K  +  S   +    D+I +++A+++N  Y 
Sbjct: 179 NDLRIDKHVEYHF--PNGILDYVKEKNETKPKINPSIFYVDDKHDDIEVEVALQYNAEYQ 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN++ F NNI   +GGTH  GLR +L R I  Y EK     K       DD +EG   ++
Sbjct: 237 ENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIV 296

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SI+  DP++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   R 
Sbjct: 297 SIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNANAQKARI 356

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  LD  SLPGKLADC  +DP+ +EL+LVEGDSAGGSAK GR+R  QAI
Sbjct: 357 AAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAI 416

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK+LNVER    +  ++ EI +++TA+GTGI +D  D++KLRY KI+IMTDADVDG
Sbjct: 417 LPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDI-DLSKLRYGKIVIMTDADVDG 475

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           AHIRTLLLTFF+R M  L+ +G +YI +PPLY I  GK + Y   +  LE+  
Sbjct: 476 AHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDAELEELK 528



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    S      +V      V    +    
Sbjct: 423 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLL 482

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    + +    +       L  I  G K+      + L+ +    F   R   ++
Sbjct: 483 LTFFYRYMKQLVVDGHVY-IAQPPLYKIEAGKKVAYAYSDAELEELKAGDFKDSR--FTI 539

Query: 737 QRYKGLGEMNASQL 750
           QRYKGLGEM+  QL
Sbjct: 540 QRYKGLGEMDPIQL 553


>gi|170747435|ref|YP_001753695.1| DNA topoisomerase IV subunit B [Methylobacterium radiotolerans JCM
           2831]
 gi|170653957|gb|ACB23012.1| DNA topoisomerase IV, B subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 686

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 235/576 (40%), Positives = 327/576 (56%), Gaps = 13/576 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  I V
Sbjct: 42  EGGYTASDIEVLEGLEPVRRRPGMYIGGTD-ERALHHLFAEVIDNSMDEAVAGHASFIEV 100

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
            L   G+  V+DNGRGIP D H +  G SA EVIMT LHAGGKF+ K Y+ SGGLHGVG+
Sbjct: 101 ELEESGALVVTDNGRGIPVDPHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGI 160

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L++ + R   +Y  +F  G     L + G   N  GT V F P + IF   
Sbjct: 161 SVVNALSDLLEVEVARNQTLYRQTFSRGHAQGALELVGRVQNRRGTRVRFHPDAQIFGSL 220

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDRH 239
            F+   L    R  ++L   V+I            +  P E    +  G+  +++     
Sbjct: 221 KFDPRRLFKMARSKAYLFGGVEIRWRCAPALLEGLADVPAEAVHRFPDGLRDYLARDIDG 280

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           K+ + ++    + ++   + S++ A+ W          + N IP  +GGTH +GLR AL 
Sbjct: 281 KELVTEAMFSGKITKPGSHGSLEWAVAWMVAEDGFSHSYCNTIPTPEGGTHEAGLRVALL 340

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +  + E+   +K+   +V  DD      S+LS+ + +P F  QTK+KL + E + +VE
Sbjct: 341 RGLREHAERVNQAKRM-TAVTTDDVMATCASMLSVFIREPEFQGQTKDKLATVEAQRIVE 399

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + V D    WL   P +A  ++  V+D +  R   R+ ++   RK       LPGKLADC
Sbjct: 400 TAVRDAFDHWLAASPAQANKLLDWVIDRAEERLRRRQEKE-VARKSATRKLRLPGKLADC 458

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S      SE+F+VEGDSAGGSAKQ R R  QAILPLRGKILNV  A  DK+ ++Q I  L
Sbjct: 459 SAAGTAGSEIFIVEGDSAGGSAKQARDRATQAILPLRGKILNVASASRDKLGANQLISDL 518

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ALG G G  +F    LRY K+IIMTDADVDGAHI +LL+TFF+RQMP LI  G LY+ 
Sbjct: 519 TLALGCGTG-TAFRETDLRYEKVIIMTDADVDGAHIASLLITFFYRQMPKLIDRGHLYLA 577

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
            PPLY + +G  + Y +D+   E  +       ++E
Sbjct: 578 IPPLYRLQQGSKVAYARDDADRERIVKTVFKGGKVE 613



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSR 779
           ++ T+F  G+  + + R+KGLGEM  +QL ETT++P  R+LLRV + D       D   R
Sbjct: 602 IVKTVFKGGK--VEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAVLDEARESTGDTVER 659

Query: 780 LMGDEVEPRREFIQENSLPSA---LDI 803
           LMG++ E R  FI E +  +    LDI
Sbjct: 660 LMGNKPEARFAFISERAAFAEGADLDI 686


>gi|304391681|ref|ZP_07373623.1| DNA topoisomerase IV, B subunit [Ahrensia sp. R2A130]
 gi|303295910|gb|EFL90268.1| DNA topoisomerase IV, B subunit [Ahrensia sp. R2A130]
          Length = 681

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/601 (38%), Positives = 335/601 (55%), Gaps = 18/601 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y+A  I++L+GL+ V++RP MYIG TD    LHH+  EV+DN++DE++ G+A 
Sbjct: 35  KGKTEGDYNASDIEVLEGLEPVRRRPGMYIGGTDS-KALHHLFAEVIDNSMDEAVAGHAS 93

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            I V L+ +G  T++DNGRGIP D H +    SA EVIMT LHAGGKF+ K+Y+ SGGLH
Sbjct: 94  WIEVELDAEGYLTITDNGRGIPVDPHPKFKDKSALEVIMTTLHAGGKFDGKAYETSGGLH 153

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L + + R   +Y  SF  G    P+ + G   N  GT+V F P + I
Sbjct: 154 GVGISVVNALSDDLIVEVARNRELYRQSFSRGHAVGPVELVGEVQNRRGTKVRFHPDAQI 213

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVS 234
           F     F   TL    R  ++L   V+I                 +    + GG++ F+ 
Sbjct: 214 FGKDARFKPLTLFKMARSKAYLFGGVEIRWSCDPALVSGKDEVTDKAVFHFPGGLKDFLL 273

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
                +  +   P      +   + +++ A+ W  G    V  + N IP  +GGTH +GL
Sbjct: 274 EKLGKQMQVTDRPFAGTTEKRSGHGAVEWAITWY-GDDGFVNSYCNTIPTAEGGTHEAGL 332

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ L R + SY E           +  DD      +++S+ + +P F  QTK+KL + E 
Sbjct: 333 RTTLARSLKSYAELVGNK--KGAMITTDDVMTSAAAMISVFVREPEFVGQTKDKLATVEA 390

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
             +VES + D    WL   P ++  ++  V+D +  R   R+ ++   RK       LPG
Sbjct: 391 SRIVESAIRDAFDHWLAASPAQSAKLLDWVVDRAEERMRRRQEKE-VNRKNATRKLRLPG 449

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+     +E+F+VEGDSAGGSAKQ R+R++QAILPLRGKILNV  A  DKM SSQ
Sbjct: 450 KLADCSKNAKGGTEIFIVEGDSAGGSAKQARNRKSQAILPLRGKILNVASATRDKMASSQ 509

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           +I  LI ALG G G   F  + LRY ++IIMTDADVDGAHI +LL+TFF ++MP +I  G
Sbjct: 510 QIQDLIQALGCGTG-TRFSADDLRYDRVIIMTDADVDGAHIASLLITFFHQEMPGIIETG 568

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            LY+  PPLY +++G    Y +D+   ++ L ++  S +       KG+     +   + 
Sbjct: 569 SLYLAVPPLYKLSQGGKTMYARDDAHKDELLKSEFKSGKKVDLGRFKGL--GEMMPAQLK 626

Query: 593 D 593
           +
Sbjct: 627 E 627



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 4/179 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++ + ++ + +  +   +   +       D ++      V    +    
Sbjct: 494 ILNVASATRDKMASSQQIQDLIQALGCGTGTRFSADDLRYDRVIIMTDADVDGAHIASLL 553

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGISMQ 737
             F        I +  +      +  L   G  +          LL + F  G+K + + 
Sbjct: 554 ITFFHQEMPGIIETGSLYLAVPPLYKLSQGGKTMYARDDAHKDELLKSEFKSGKK-VDLG 612

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+KGLGEM  +QL ETT++P  R+LLRV I +   A D   RLMG + E R  FIQEN+
Sbjct: 613 RFKGLGEMMPAQLKETTMDPAKRTLLRVNIDEPIPAKDSIDRLMGTKPELRFNFIQENA 671


>gi|33860313|gb|AAQ54936.1| DNA gyrase subunit B [Mesoplasma corruscae]
          Length = 534

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 245/536 (45%), Positives = 351/536 (65%), Gaps = 6/536 (1%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
           SGLHH+++E+LDN+IDE++ G+AD IT+TL  DG   V DNGRGIP  + ++ G SA E+
Sbjct: 1   SGLHHLVWEILDNSIDEAMAGFADKITLTLTKDGEVIVEDNGRGIPVGVQQDSGKSALEL 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-DN 157
           + T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + +KREG I++  F  G     
Sbjct: 61  VFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHKQIFSAGGTIQT 120

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            + + G     TGT+V F P  +IF+   D++Y+T+++++++LS+LN  + I   D+R  
Sbjct: 121 EIEIIGET-VQTGTKVRFKPDPEIFTEVIDYDYETVRNKVKQLSYLNKGLVIQFNDERID 179

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
              E       GI  +V   +  K+ +  S   I G   +I +++A+++N  Y E+++ F
Sbjct: 180 RSIEYHF--PNGILDYVKEKNETKQKINPSVYYIDGKYGDIEVEVALQYNAEYQESLITF 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI   +GGTH  GLR AL R +  Y EK     K       DD +EG   ++SI+  D
Sbjct: 238 VNNINTHEGGTHEDGLRQALVRVLNRYAEKVAIGNKQAAKYSWDDIKEGMVCIVSIRHTD 297

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P++  QTK KL + + +  V+  V D    +L + P +AK I+ K  +A   R AA+RAR
Sbjct: 298 PQYEGQTKTKLANPDAKKAVDVVVGDSFEEFLLKSPEDAKAILDKNANAQKARIAAQRAR 357

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           + TRRK  LD  SLPGKLADC  +DP  +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK
Sbjct: 358 EETRRKSALDTFSLPGKLADCESKDPSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGK 417

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           +LNVER    +  ++ EI +++TA+GTGI ++  D++K+RY KI+IMTDADVDGAHIRTL
Sbjct: 418 VLNVERVAEVRAFANAEIKSIVTAIGTGIKEEL-DLSKIRYGKIVIMTDADVDGAHIRTL 476

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           LLTFF+R M  L+ NG +YI +PPL+ I  GK ++Y   +  LE++  N+   ++I
Sbjct: 477 LLTFFYRYMKQLVDNGNIYIAQPPLFKIEAGKKVEYAYSDAELENFKQNEFKDQDI 532


>gi|227821835|ref|YP_002825805.1| DNA topoisomerase IV subunit B [Sinorhizobium fredii NGR234]
 gi|227340834|gb|ACP25052.1| DNA gyrase subunit B [Sinorhizobium fredii NGR234]
          Length = 685

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/596 (38%), Positives = 340/596 (57%), Gaps = 18/596 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I V 
Sbjct: 44  SDYDASAIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVY 102

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ +G  TV+DNGRGIP + H +    S  EV+MT LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 103 LDAEGFLTVTDNGRGIPVENHPKFPNKSTLEVVMTVLHAGGKFDGKAYETSGGLHGVGVS 162

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185
           VVNALS  +++ + R   +Y   F  GI    L   G   N  GT+V F P   IF    
Sbjct: 163 VVNALSDSVEVEVARNRKLYRQRFSRGIPQGGLEELGEVHNRRGTKVRFHPDPQIFGPHA 222

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDRH 239
            F    L    R  ++L   V+I          + S  P +    + GG++ +++     
Sbjct: 223 RFEPARLFRMARSKAYLFGGVEIRWSCDPSLLPEGSETPEKAVFHFPGGLKDYLAATLGK 282

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + S++ A+ W  G  + +  + N IP  +GGTH +GLR ALT
Sbjct: 283 EFTVTREIFAGKSEKSGGHGSLEWAVTWYGG-DQQIHSYCNTIPTPEGGTHEAGLRIALT 341

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + + +Y E +   +     V  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 342 KGLKNYAELTQNKRAA--IVTTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIVE 399

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    +L ++P EA  ++  V++        RR      RK  +    LPGKLADC
Sbjct: 400 NALRDPFDHYLADNPGEAAKLLDWVIER-AEERVRRRKEKEVNRKTAVRKLRLPGKLADC 458

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           ++   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 459 AQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQITDL 518

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G  +  +    LRY ++IIMTDADVDGAHI +LL+TFF+++MP LI  G LY+ 
Sbjct: 519 VQALGCGT-RSKYREEDLRYERVIIMTDADVDGAHIASLLITFFYQEMPELIRGGHLYLA 577

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
            PPLY +++G    Y +D+   E+ +  +            KG+     L   + +
Sbjct: 578 VPPLYRLSQGSRTFYARDDAHREELMRTEFNGRGKVEIGRFKGL--GEMLPAQLKE 631



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVE 786
            GR  + + R+KGLGEM  +QL ETT++P  R+LL+V+I D       +    LMG + +
Sbjct: 608 NGRGKVEIGRFKGLGEMLPAQLKETTMDPANRTLLKVEIDDVDFEGTREAVDNLMGTKAD 667

Query: 787 PRREFIQENSLPS-ALDI 803
            R  FIQE ++    LDI
Sbjct: 668 ARFRFIQERAVFVENLDI 685


>gi|222148646|ref|YP_002549603.1| DNA topoisomerase IV subunit B [Agrobacterium vitis S4]
 gi|221735632|gb|ACM36595.1| DNA gyrase subunit B [Agrobacterium vitis S4]
          Length = 702

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 235/651 (36%), Positives = 353/651 (54%), Gaps = 20/651 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A
Sbjct: 56  ASTGNPDDYGASSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHA 114

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           + I V L+ +G  TVSDNGRGIP +LH +  G S  EVIMT+LHAGGKF+ K+Y+ SGGL
Sbjct: 115 NFIDVHLDAEGFLTVSDNGRGIPVELHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGL 174

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L++ + R   +Y   F  G+    L   G   N  GT V F P   
Sbjct: 175 HGVGVSVVNALSDLLEVEVARNRKLYRQRFSRGVPLGGLEELGDVHNRRGTRVRFHPDPQ 234

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFV 233
           IF     F+   +    R  ++L   V+I               P +    + GG++ ++
Sbjct: 235 IFGDHAKFDPGRIFRMARSKAYLFGGVEIRWSCDPAILTTGGDIPDKAVFHFPGGLKDYL 294

Query: 234 SYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           +     +  + +     +  +   + +++ A+ W  G    V  + N IP  +GGTH +G
Sbjct: 295 AATLGKEFTVTREIFAGKTEKTGGHGAMEWAITWYGG-DPQVHSYCNTIPTPEGGTHEAG 353

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR ALT+ + +Y E +   +  + S   DD       +LS+ + +P F  QTK+KL + E
Sbjct: 354 LRIALTKGLKNYAELTQNKRAQQIST--DDVMISAVGMLSVFIREPEFVGQTKDKLATVE 411

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            + +VE+ + D    +L ++P EA  ++  V++        RR      RK  +    LP
Sbjct: 412 AQRLVENALRDPFDHYLADNPNEAAKLLDWVIER-AEERLRRRKEKEVNRKTAVRKLRLP 470

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC++   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K++++
Sbjct: 471 GKLADCAQNTAEGAELFIVEGDSAGGSAKQARNRSNQAILPLRGKILNVGSASREKLMAN 530

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           Q+I  LI ALG G  +  +    LRY +I+IMTDADVDGAHI +LL+TFF+++MP LI  
Sbjct: 531 QQIADLIQALGCGT-RTKYRDEDLRYERIVIMTDADVDGAHIASLLITFFYQEMPELIRG 589

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL-FCDSKGVISKNDLRNF 590
             LY+  PPLY I +G    Y +D+    + +      +++E+      G +    L+  
Sbjct: 590 NHLYLAVPPLYVIRQGAKTVYARDDAHRAELMETTFKGKKVEIGRFKGLGEMMPAQLKET 649

Query: 591 IDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
             D    + +   I D      +  ++  + +         +   + A  L
Sbjct: 650 TMDPAKRMLLKVEIDDVDFEGTRDAVDALMGTKPEARFRFIQERAAFAENL 700



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGS-----KYKRIFSNRIEENYLTILSLICN 710
              + D+  +RI   +     ++G+ I S        +   +         +  L +I  
Sbjct: 547 KYRDEDLRYERIV--IMTDADVDGAHIASLLITFFYQEMPELIRGNHLYLAVPPLYVIRQ 604

Query: 711 GDKIKITGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
           G K       +    +     KG  + + R+KGLGEM  +QL ETT++P  R LL+V+I 
Sbjct: 605 GAKTVYARDDAHRAELMETTFKGKKVEIGRFKGLGEMMPAQLKETTMDPAKRMLLKVEID 664

Query: 769 DA--SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D       D    LMG + E R  FIQE +  +  LDI
Sbjct: 665 DVDFEGTRDAVDALMGTKPEARFRFIQERAAFAENLDI 702


>gi|119384573|ref|YP_915629.1| DNA topoisomerase IV subunit B [Paracoccus denitrificans PD1222]
 gi|119374340|gb|ABL69933.1| DNA topoisomerase IV subunit B [Paracoccus denitrificans PD1222]
          Length = 656

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/579 (40%), Positives = 321/579 (55%), Gaps = 19/579 (3%)

Query: 1   MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M+D+        + SY A SI++L+GL+ V+KRP MYIG TD E  LHH++ E+LDN++D
Sbjct: 1   MADDLFPAADKASESYSASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMD 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKS 113
           E++ G+A  I V L  D S  + DNGRGIP D H +  G SA EVI+  LHAGGKF+   
Sbjct: 60  EAVAGHASRIEVELLADFSVVIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGDV 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y+ SGGLHGVG SVVNALS  + +++ R   +YE  F  G+   P+   G+A N  GT V
Sbjct: 120 YQTSGGLHGVGASVVNALSDSMVVQVARNRELYEQCFSRGLPLGPVEKVGAAPNRRGTTV 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEA 231
           TF     IF    F    L   ++  ++L S V+I    +      P E T  + GG+  
Sbjct: 180 TFHADEQIFGHHRFKPARLLRMVKSKAYLFSGVEIRWKSEIDDGETPLEATFHFPGGLAD 239

Query: 232 FVSYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           ++  +  +       P        +       +D A+ W       +  + N +P  +GG
Sbjct: 240 YLGEVLGNASTYADRPFAGSVDFKEKFNTPGKVDWAINWTPSRDGFIQSYCNTVPTPEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH +G  SA+ R I +Y E+   S K    +  DD   G  +++S  + +P F  QTK++
Sbjct: 300 THEAGFWSAILRGIRAYGER--VSNKKAAQITRDDLLAGGCALVSCFIREPEFVGQTKDR 357

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++E + +VE  V D    WL      A  I+  ++         RR    T RK    
Sbjct: 358 LATTEAQRLVEGAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETARKSATK 416

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              LPGKL DCS  + + +ELF+VEGDSAGGSAK  R R  QA+LPLRGKILNV  A   
Sbjct: 417 KLRLPGKLVDCSATNREGTELFIVEGDSAGGSAKMARERTTQALLPLRGKILNVLGAASS 476

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           K+ S+QEI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM 
Sbjct: 477 KLGSNQEIADLCQALGVGMGSR-FNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMR 535

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
            LI  G LY+  PPLY +T+G    YV D+   E +L  
Sbjct: 536 PLIDKGHLYLACPPLYRLTQGPHRIYVADDAEKESWLAK 574



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 7/190 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N        +    ++A+    +       ++      D ++      V    +    
Sbjct: 467 ILNVLGAASSKLGSNQEIADLCQALGVGMGSRFNVDDLRYDKIIIMTDADVDGAHIASLL 526

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKG-ISMQR 738
             F F      I    +      +  L     +I +         +   +G KG I +QR
Sbjct: 527 MTFFFTQMRPLIDKGHLYLACPPLYRLTQGPHRIYVADDAEKESWLAKGLGGKGKIDVQR 586

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM+A  L +TT+NP TR L+RV I +    +  DL  RLMG + E R +FIQEN+
Sbjct: 587 FKGLGEMDAKDLKDTTMNPRTRKLIRVSIDEEEGGETGDLVERLMGKKPELRFQFIQENA 646

Query: 797 LPS---ALDI 803
             +    LD+
Sbjct: 647 QFADAEELDV 656


>gi|310816655|ref|YP_003964619.1| DNA topoisomerase IV, B subunit [Ketogulonicigenium vulgare Y25]
 gi|308755390|gb|ADO43319.1| DNA topoisomerase IV, B subunit [Ketogulonicigenium vulgare Y25]
          Length = 654

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 247/657 (37%), Positives = 351/657 (53%), Gaps = 24/657 (3%)

Query: 1   MSDNI------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M+D++      Q + Y+A SI++L+GL+ V+KRP MYIG TD E  LHHM+ E+LDN++D
Sbjct: 1   MADDLLAGSGAQGNEYNAASIEVLEGLEPVRKRPGMYIGGTD-ERALHHMVAEILDNSMD 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKS 113
           E++ G+A+ I V L+ D S TV DNGRGIP D H +    SA EVI+  LHAGGKF+ K+
Sbjct: 60  EAVAGHANRIEVELHEDYSVTVRDNGRGIPVDPHPKFPDKSALEVILCTLHAGGKFSNKA 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y  SGGL+GVG SVVNALS  +++ + R   +Y  SF  G+   P+   G+A N  GT V
Sbjct: 120 YSTSGGLNGVGSSVVNALSDLMRVEVARNRELYVQSFSRGVPQGPVQKVGAAPNRKGTSV 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEA 231
           TF P ++IF         L   +R  ++L S V+I           P E T  + GG+  
Sbjct: 180 TFHPDAEIFGSLKLKPARLFKMVRSKAYLFSGVEIRWKTAIDDGETPAEATFKFPGGLAD 239

Query: 232 FVSYLDRHKKPLMQSPIRIQ---GSRDNI--SIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           +++ + +  +     P   +     + N+  S++ A+ W+      +L +TN +P  +GG
Sbjct: 240 YLADVMKDTQTYADKPFAGKVSFEEKFNVPGSVEWAINWSAMRDGFILSYTNTVPTPEGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH +G  +A+ + + +Y E+    K     +  +D   G  ++LSI + +P F  QTK++
Sbjct: 300 THEAGFWAAVLKGVKTYGERVNNRKAKD--ITREDLLTGGCALLSIFIREPSFVGQTKDR 357

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L + E    VE  V D    WL   P  A+ I+  ++         RR    T+RK    
Sbjct: 358 LSTEEAAKWVELAVRDHFDNWLAADPKSAREILDFLVLR-AEERLRRRQEKETQRKSATK 416

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              LPGKL DCS +    +ELFLVEGDSAGGSAK  RSRE QAILPLRGK+LNV  A   
Sbjct: 417 RLRLPGKLTDCSAKIRDNTELFLVEGDSAGGSAKGARSRETQAILPLRGKVLNVMGAAAG 476

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           K+  +QE+  +  ALG  +G   F+   LRY +IIIMTDADVDGAHI +LL+TFFF QM 
Sbjct: 477 KLNQNQELSDICEALGVQMGAK-FNTEDLRYQRIIIMTDADVDGAHIASLLMTFFFTQMR 535

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISK 584
            LI  G L++  PPLY +T+G +  YV D+   E +L                  G +  
Sbjct: 536 PLIEKGHLFLACPPLYRLTQGANRLYVADDAEKEYWLQKGLGGRGKIDVQRFKGLGEMDA 595

Query: 585 NDLRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            DL+           I   I D  P      +E+ +           + N     +L
Sbjct: 596 KDLKETTMDPKTRKLIRVTINDDEPGETSDLVERLMGKKPELRFQYIQENARFVEEL 652



 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 5/188 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N        ++   +L++    +  +    ++        ++      V    +    
Sbjct: 467 VLNVMGAAAGKLNQNQELSDICEALGVQMGAKFNTEDLRYQRIIIMTDADVDGAHIASLL 526

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKG-ISMQR 738
             F F      I    +      +  L    +++ +         +   +G +G I +QR
Sbjct: 527 MTFFFTQMRPLIEKGHLFLACPPLYRLTQGANRLYVADDAEKEYWLQKGLGGRGKIDVQR 586

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM+A  L ETT++P TR L+RV I D    +  DL  RLMG + E R ++IQEN+
Sbjct: 587 FKGLGEMDAKDLKETTMDPKTRKLIRVTINDDEPGETSDLVERLMGKKPELRFQYIQENA 646

Query: 797 LPS-ALDI 803
                LD+
Sbjct: 647 RFVEELDV 654


>gi|66009818|gb|AAY42705.1| GyrB [Burkholderia pyrrocinia]
          Length = 637

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 286/641 (44%), Positives = 398/641 (62%), Gaps = 20/641 (3%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGS 164
           SGGLHGVGVS VNALSSWL+L ++R G    M F  GI              +P++VTG 
Sbjct: 1   SGGLHGVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       
Sbjct: 61  TE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFA 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+D
Sbjct: 118 FAGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRD 177

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK
Sbjct: 178 GGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTK 237

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TRRKGV
Sbjct: 238 DKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTRRKGV 297

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR
Sbjct: 298 LDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAR 357

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           +DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQ
Sbjct: 358 YDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQ 417

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           MP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  VIS 
Sbjct: 418 MPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAVISG 477

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           + L       L    +I      +D   +E  +     +  S++    + A  L   L+ 
Sbjct: 478 DALGELARSYLLSRSVIDRLSRLYDPAALEAIMDGVAIDL-SNEASTEASAKALHAALHD 536

Query: 645 IAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
            A K+E      +        + V+R   G     V++     +   +     +N     
Sbjct: 537 EALKNEVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVATANTFTGL 596

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                 +      + +T   S +  + +   + +S QRYKG
Sbjct: 597 IGEGAVIKRGERSMAVTDFKSAMKWLLADAERNVSKQRYKG 637


>gi|95020419|gb|ABF50734.1| DNA gyrase subunit B [Mesoplasma entomophilum]
          Length = 553

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/533 (45%), Positives = 343/533 (64%), Gaps = 7/533 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T    GLHH+++E++DN++DE++ G+A+ I +T+  +G   V DNGRGIP  +  + G
Sbjct: 1   GSTSKA-GLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGIQVDSG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + +KREG I+   F  
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQVFSG 119

Query: 153 GIL-DNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISL 210
           G      + + G   N+TGT V F P  +IF    +F+Y+T+++++++LS+LN  + I L
Sbjct: 120 GGTQQTEIEIIGET-NETGTTVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIEL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D R  +  E       GI  +V   +  K  +  S   +    D+I +++A+++N  Y 
Sbjct: 179 NDLRIDKHVEYHF--PNGILDYVKEKNETKPKINPSIFYVDDKHDDIEVEVALQYNAEYQ 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN++ F NNI   +GGTH  GLR +L R I  Y EK     K       DD +EG   ++
Sbjct: 237 ENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIV 296

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SI+  DP++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   R 
Sbjct: 297 SIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNANAQKARI 356

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  LD  SLPGKLADC  +DP+ +EL+LVEGDSAGGSAK GR+R  QAI
Sbjct: 357 AAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAI 416

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK+LNVER    +  ++ EI +++TA+GTGI +D  D++KLRY KI+IMTDADVDG
Sbjct: 417 LPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDI-DLSKLRYGKIVIMTDADVDG 475

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           AHIRTLLLTFF+R M  L+ +G +YI +PPLY I  GK + Y   +  LE+  
Sbjct: 476 AHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDAELEELK 528



 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    S      +V      V    +    
Sbjct: 423 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLL 482

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    + +    +       L  I  G K+      + L+ +    F   R   ++
Sbjct: 483 LTFFYRYMKQLVVDGHVY-IAQPPLYKIEAGKKVAYAYSDAELEELKAGDFKDSR--FTI 539

Query: 737 QRYKGLGEMNASQL 750
           QRYKGLGEM+  QL
Sbjct: 540 QRYKGLGEMDPIQL 553


>gi|308801547|ref|XP_003078087.1| putative DNA gyrase B subunit (ISS) [Ostreococcus tauri]
 gi|116056538|emb|CAL52827.1| putative DNA gyrase B subunit (ISS) [Ostreococcus tauri]
          Length = 684

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 245/591 (41%), Positives = 344/591 (58%), Gaps = 21/591 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++  YDA SIQ+L+GL+ V+KRP MYIG T    GLHH+++EVLDN++DE   G+A  + 
Sbjct: 56  ESGEYDAGSIQVLQGLEPVRKRPGMYIGSTS-TKGLHHLVWEVLDNSVDEVQAGHASHVQ 114

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGV 123
           VT++ DG  TV D+GRGIPTD+H   G S+ E ++T LHAGGKF  +   Y VSGGLHGV
Sbjct: 115 VTVDDDGFVTVMDDGRGIPTDVHPVTGKSSLETVLTILHAGGKFGGDSSGYHVSGGLHGV 174

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS  +++ +   GN+ E                 +GN  GT V F P   IF 
Sbjct: 175 GISVVNALSELVEVTVHATGNMKE------------KQQDGSGNKKGTMVRFKPDDQIFD 222

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE--ITMFYKGGIEAFVSYLDRHKK 241
              F+ + ++ R++EL+FLN   ++ L    +         + Y  G++ +V  L     
Sbjct: 223 KVKFDNNIIRTRMKELAFLNKGTELHLKTFNTKTKSYVEEKLVYAEGLKDYVLDLTADAT 282

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            L   PI   G  + I ++ ++ W  D Y + +L + N+I   DGGTH+ GL+ +LT+ I
Sbjct: 283 RLH-EPITFSGEMEGIRVEGSLCWTADSYSDTLLGYANSIRTIDGGTHIDGLKYSLTKTI 341

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +   K+   K    ++ GD  REG + V+++ +P+P F  QTK +L +SEVR +VE+  
Sbjct: 342 NNASRKAKLLKDADSNLGGDHVREGLSGVIAVWVPEPEFEGQTKTRLGNSEVRRIVENIA 401

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +D +    E +  + K +  K   A    +AA+RAR+L RRK VL    LPGKL+DCS  
Sbjct: 402 SDAVMGHFEFNSADLKAVFAKAQSAFKAAEAAKRARELVRRKTVLTANRLPGKLSDCSSS 461

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML-SSQEIGTLIT 479
           D  ++E+FLVEGDSAGGS KQGR R  QA+LPLRGKI+NVER      L  + EI  +I+
Sbjct: 462 DADRTEIFLVEGDSAGGSCKQGRDRSFQAVLPLRGKIMNVERKLDAAALYKNTEITNMIS 521

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG G   +  D + LRY KIII+TDADVDGAHIRTLLLTF +R    L   GF+Y   P
Sbjct: 522 ALGLGTMGEDLDTSALRYSKIIILTDADVDGAHIRTLLLTFLYRYQRDLFEKGFVYAAVP 581

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589
           PLY +  GK   Y  D++ L+  L      + +        G +    L +
Sbjct: 582 PLYKVAVGKKETYCYDDDDLQRVLAALPEGANKHIQRFKGLGEMMPEQLWS 632



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 681 SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKITGPCSL---LDTIFSIGRKGIS 735
            + +F  +Y+R    +  +      +  +     +        L   L  +     K   
Sbjct: 558 LLLTFLYRYQRDLFEKGFVYAAVPPLYKVAVGKKETYCYDDDDLQRVLAALPEGANK--H 615

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           +QR+KGLGEM   QLW TTL+P TR L R+ + DAS A+ +FS LM  EV+PRR  I+E
Sbjct: 616 IQRFKGLGEMMPEQLWSTTLDPKTRLLKRLTVDDASAANHMFSTLMSKEVDPRRRLIEE 674


>gi|84515342|ref|ZP_01002704.1| DNA topoisomerase IV subunit B [Loktanella vestfoldensis SKA53]
 gi|84510625|gb|EAQ07080.1| DNA topoisomerase IV subunit B [Loktanella vestfoldensis SKA53]
          Length = 652

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/577 (39%), Positives = 327/577 (56%), Gaps = 17/577 (2%)

Query: 1   MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D++ ++     Y+A SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE+
Sbjct: 1   MADDLLSTTGPDDYNASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I V L+ D S T+ DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGHANRIEVELHADHSVTIRDNGRGIPVDPHPKFPDKSALEVILCTLHAGGKFSGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ R   ++E  F  G+   P+   G   N  GT VTF
Sbjct: 120 TSGGLHGVGASVVNALSDSMVVQVARNKELFEQRFSRGLPLGPIQKLGPTQNRRGTTVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFV 233
                IF  Q F    L   ++  ++L S V+I    + +    P E T  + GG+  ++
Sbjct: 180 HADEQIFGSQKFKPARLYKSIQSKAYLFSGVEIRWKTEINDGETPLEATFHFPGGLADYL 239

Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                        P            +   ++ A+ W       +  + N +P  +GGTH
Sbjct: 240 KETLGKSATYADKPFAGSVDFADKFNEPGKVEWAINWTPVRDGFIQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  +A+ + I  Y E +   K     +  +D   G  +++S  + +P F  QTK++L 
Sbjct: 300 VAGFWNAILKGIKGYGELANNKKAA--LITREDLMSGGCALVSCFIREPAFVGQTKDRLS 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           S     + E  V D    WL      A  I+  ++  +  R   R+ ++ T RK      
Sbjct: 358 SEIAARMTEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLKRRQEKE-TARKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +D K +ELF+VEGDSAGGS K  R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 417 RLPGKLTDCTSKDRKGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++QEI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 477 TTNQEINDLCEALGVGMG-TKFNVDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           I +G LY+  PPLY +T+G    YV D+   E  +  
Sbjct: 536 IDHGHLYLACPPLYRLTQGARRVYVADDAEKEKMMAK 572



 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 7/157 (4%)

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++      + ++      V    +      F F      I    +      +  L     
Sbjct: 497 FNVDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDHGHLYLACPPLYRLTQGAR 556

Query: 713 KIKITGPCSLLDTIFS--IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           ++ +       + + +  +G KG I +QR+KGLGEM+A  L ETT++P TR L+RV + D
Sbjct: 557 RVYVADDAE-KEKMMAKGLGGKGKIDVQRFKGLGEMDAKDLKETTMDPATRKLIRVTVHD 615

Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
                  DL  RLMG + E R ++IQEN+     LD+
Sbjct: 616 DVPGDTADLVERLMGKKPELRFQYIQENARFVEELDV 652


>gi|187934374|ref|YP_001884982.1| DNA topoisomerase IV subunit B [Clostridium botulinum B str. Eklund
           17B]
 gi|187722527|gb|ACD23748.1| DNA gyrase subunit B [Clostridium botulinum B str. Eklund 17B]
          Length = 649

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/651 (35%), Positives = 362/651 (55%), Gaps = 34/651 (5%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            ++N++YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   GY D 
Sbjct: 2   ELKNNNYDVTDLTSLEKLEPVRIRPGMYIGST-GTKGLHHCIWEILDNAIDEITNGYGDK 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           +T+ LN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKF+ K+YK SGGLHGV
Sbjct: 61  VTIVLNADKSATIYDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDTGTE 172
           G +VVNALS W+++ + +  NIY   F             G   + L V G   + TGT+
Sbjct: 121 GAAVVNALSKWVEVEVYQNSNIYRQRFEYAFDKELKRSMPGTPVSKLQVIGKT-DKTGTK 179

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTF P S+IFS  DF +D +  RL+EL+F N  +++ LID+R  E  +   + + G+  F
Sbjct: 180 VTFKPDSEIFSYIDFKFDVIDSRLQELAFQNKGIRLELIDRRKDEEIQKEYYSENGLLDF 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++YL+  K  + + PI  +G R   ++    ++ +++ D   E +  + NNIP  + GTH
Sbjct: 240 INYLNESKTVIHEIPIIFEGERTVNNLQVQGEICIQFTDSSTEYIASYVNNIPTTEAGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ +TR      ++    K+  +   G+D REG T++L IK+ +P F  QTK KL 
Sbjct: 300 ETGFKTGMTRAFKEGAKRLNLIKEKDKEFEGNDLREGMTAILRIKITNPIFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E  +++   V   L  W+E++   A  ++   L+++  R+  ++  D  ++K  +  A
Sbjct: 360 NNEAYTMMNDLVYTKLLEWIEDNKELATTLISNALESAKRREKIKKINDAEKKKVGVGTA 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            L GK+A C+ +D   +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + + +
Sbjct: 420 PLAGKIAVCTLKDKSVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENV 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           L+S+E+     A+GTG   +++  + ++Y K+IIM+DADVDG HIRTL +T+ +R M SL
Sbjct: 480 LASEELRIFNAAIGTGT-LENYKQDDMKYDKVIIMSDADVDGYHIRTLWMTYIYRYMRSL 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKN 585
           I NG LY+ +PPLY + +             ++ L           +       G ++  
Sbjct: 539 IANGHLYLAQPPLYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGALIQRYKGLGEMNPE 598

Query: 586 DLRN-------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            L                IDDA K +K+I     +  +         G FN
Sbjct: 599 QLWETTLNPETRTLIQVTIDDAAKAEKMISLLMGDVVEPRKNYMYKYGEFN 649



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 56/91 (61%)

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              +  +    + +K       L+       KG  +QRYKGLGEMN  QLWETTLNP+TR
Sbjct: 551 LYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGALIQRYKGLGEMNPEQLWETTLNPETR 610

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +L++V I DA++A+ + S LMGD VEPR+ +
Sbjct: 611 TLIQVTIDDAAKAEKMISLLMGDVVEPRKNY 641


>gi|66009677|gb|AAY42697.1| GyrB [Burkholderia ambifaria]
          Length = 636

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 278/640 (43%), Positives = 398/640 (62%), Gaps = 20/640 (3%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P++VTG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPMLVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +     G ++ + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 AGGVKGFVEYINKTKTNLHPTIFHAIGEKEGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TRRKGVL
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTRRKGVL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+
Sbjct: 298 DGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARY 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQM
Sbjct: 358 DKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQM 417

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS +
Sbjct: 418 PDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAAAISGD 477

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            L       L    +I+     +D   +E  +     +  S++    + A  L   L+  
Sbjct: 478 ALGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHAALHDD 536

Query: 646 AEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           A K++      +        + V+R   G     V++     +   +     ++  +   
Sbjct: 537 ALKNDVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVTTADTFKGLI 596

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                +      + ++   S +  + +   + +S QRYKG
Sbjct: 597 GEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKG 636


>gi|220923231|ref|YP_002498533.1| DNA topoisomerase IV subunit B [Methylobacterium nodulans ORS 2060]
 gi|219947838|gb|ACL58230.1| DNA topoisomerase IV, B subunit [Methylobacterium nodulans ORS
           2060]
          Length = 684

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 239/628 (38%), Positives = 343/628 (54%), Gaps = 17/628 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +    + YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EV+DNA+DE++ G+A 
Sbjct: 36  EPTPEAGYDASAIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNAMDEAVAGHAS 94

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            I V L   G  TV+DNGRGIP D H +  G SA EVIMT LHAGGKF+ K Y+ SGGLH
Sbjct: 95  FIEVELAEGGILTVTDNGRGIPVDPHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLH 154

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ + R+  +Y  +F  G+    L   G   N  GT+V F P   I
Sbjct: 155 GVGVSVVNALSDLLEVEVARKQILYRQTFSRGLPQGGLEQVGPVQNRRGTKVRFHPDPQI 214

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY 235
           F    F    L    R  ++L   V+I            +  P E    +  G++ +++ 
Sbjct: 215 FGALTFEPRRLFKMARSKAYLFGGVEIRWRCAPALLEGVANVPAEAVHRFPAGLKDYLAR 274

Query: 236 LDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
               K+ +       + ++   + S++ A+ W          + N +P  +GGTH SGLR
Sbjct: 275 EIDGKELVTDGLFTGKITKPGSHGSLEWAVAWLANDDGFSSSYCNTVPTPEGGTHESGLR 334

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            AL R +  + E+    K+ +     DD      ++LS+ + +P F  QTK+KL + E  
Sbjct: 335 IALLRGLRDHAERVGQVKRMQAVTT-DDVMATCAAMLSVFIREPEFQGQTKDKLATLEAS 393

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VE+ V D    WL   P +A  ++  V+D +  R   R+ ++   RK       LPGK
Sbjct: 394 RIVEAAVRDAFDHWLAASPTQANRLLDWVIDRAEERLRRRQEKE-VARKTATRKLRLPGK 452

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS+     SE+F+VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  DK+ ++Q 
Sbjct: 453 LADCSKAGAAGSEIFIVEGDSAGGSAKQARDRATQAVLPLRGKILNVASASRDKLGANQL 512

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +  L  ALG G G   +  + LRY K+IIMTDADVDGAHI +LL+TFF+RQMP LI  G 
Sbjct: 513 LSDLTQALGCGTGAH-YREDDLRYEKVIIMTDADVDGAHIASLLITFFYRQMPRLIEKGH 571

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE--LFCDSKGVISKNDLRNFI 591
           LY+  PPLY +T+G    Y +D+   E  +     + ++E   F     ++        +
Sbjct: 572 LYLAVPPLYRLTQGSKSAYARDDRHKEQLIKTVFKNGKVEIGRFKGLGEMMPGQLKETTM 631

Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAV 617
           D A +  +   + +         +E+ +
Sbjct: 632 DPAKRTLLRVAVLEEAREATGDTVERLM 659



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 11/99 (11%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI-T 768
             D+ K      L+ T+F  G+  + + R+KGLGEM   QL ETT++P  R+LLRV +  
Sbjct: 592 RDDRHK----EQLIKTVFKNGK--VEIGRFKGLGEMMPGQLKETTMDPAKRTLLRVAVLE 645

Query: 769 DASQA-DDLFSRLMGDEVEPRREFIQENSL---PSALDI 803
           +A +A  D   RLMG++ E R  FI E +     + LDI
Sbjct: 646 EAREATGDTVERLMGNKPEARFAFISERAAFADEAELDI 684


>gi|86357804|ref|YP_469696.1| DNA topoisomerase IV subunit B [Rhizobium etli CFN 42]
 gi|86281906|gb|ABC90969.1| DNA topoisomerase IV subunit B protein [Rhizobium etli CFN 42]
          Length = 660

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/629 (36%), Positives = 345/629 (54%), Gaps = 23/629 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DNA+DE++ G+A+ I 
Sbjct: 17  NADDYGASSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNAMDEAVAGHANFIE 75

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L++ G  TV+DNGRGIP + H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 76  VHLDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVG 135

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS +L++ + R   +Y   F  G+    L   G   N  GT V F P   IF  
Sbjct: 136 VSVVNALSDFLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQIFGD 195

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    +    R  ++L   V+I    +       S  P + T  + GG++ ++    
Sbjct: 196 HMKFEAARVFRMARSKAYLFGGVEIRWSCEPGVLPEGSEVPDKATFHFPGGLKDYLQATM 255

Query: 238 RHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             +  + +     +  +   + S++ A+ W  G    V  + N IP  +GGTH +GLR A
Sbjct: 256 GKEFTVTREIFAGKTEKASGHGSMEWAITWYGG-DPQVHSYCNTIPTPEGGTHEAGLRIA 314

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT+ + +Y E +   +  +  +  DD       +LS+ + +P F  QTK+KL + E + +
Sbjct: 315 LTKGLKAYAELTQNKRAAQ--ITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRI 372

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ + D    +L ++P EA  ++  V++        RR      RK  +    LPGKLA
Sbjct: 373 VENALRDPFDHYLADNPNEAAKLLDWVIER-AEERLRRRKEKEVNRKTAVRKLRLPGKLA 431

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS+   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K  ++Q++ 
Sbjct: 432 DCSQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKFGANQQLA 491

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G  +  +    LRY +II+MTDADVDGAHI +LL+TFF+++MP L+  G L+
Sbjct: 492 DLIQALGCGT-RSKYRQEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLF 550

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +  PPLY IT+G    Y +D+    + +  +   +        KG+     +   +    
Sbjct: 551 LAVPPLYKITQGAKSAYARDDNHRAELMQTEFKGKAKVEISRFKGL--GEMMPAQLK--- 605

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
             +  +        +  I++    G  + 
Sbjct: 606 --ETTMDPAKRTLLRVLIDEVDFEGTRSA 632



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S          +LA+ +  +   +   +       + ++      V    +    
Sbjct: 473 ILNVASAGREKFGANQQLADLIQALGCGTRSKYRQEDLRYERIIVMTDADVDGAHIASLL 532

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP---CSLLDTIFSIGRKGISMQ 737
             F +    + +    +      +  +                 L+ T F  G+  + + 
Sbjct: 533 ITFFYQEMPELVRGGHLFLAVPPLYKITQGAKSAYARDDNHRAELMQTEFK-GKAKVEIS 591

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LLRV I   D          LMG + E R  FIQE 
Sbjct: 592 RFKGLGEMMPAQLKETTMDPAKRTLLRVLIDEVDFEGTRSAVDDLMGTKPEARFRFIQER 651

Query: 796 SLPS-ALDI 803
           +  +  LDI
Sbjct: 652 AAFAENLDI 660


>gi|163795529|ref|ZP_02189495.1| Type IIA topoisomerase, B subunit [alpha proteobacterium BAL199]
 gi|159179128|gb|EDP63661.1| Type IIA topoisomerase, B subunit [alpha proteobacterium BAL199]
          Length = 669

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/632 (38%), Positives = 342/632 (54%), Gaps = 18/632 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S   +   Y A  I++L+GL+ V++RP MYIG  D E  LHH++ EVLDN +DE++ G+A
Sbjct: 7   SSAARTDDYSAKDIEVLEGLEPVRRRPGMYIGGVD-ERALHHLVAEVLDNCMDEAVAGHA 65

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             I + L  D + TV DNGRGIP D H +    SA EVI+T LH+GGKF+ K Y  +GGL
Sbjct: 66  SWIEIELAADHTVTVRDNGRGIPVDPHPKFPSKSALEVILTTLHSGGKFSDKVYATAGGL 125

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L++ + R+  +Y   F  G+   PL   G+A N  GT V F P  +
Sbjct: 126 HGVGVSVVNALSDRLEVEVARDRRLYAQRFARGVPLGPLETIGAAPNRRGTTVRFHPDPE 185

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFV 233
           IF     F   TL    R  ++L   V+I               P E  + Y GG+  F+
Sbjct: 186 IFGPNAHFRPATLYRMSRSKAYLFKGVEIRWKVDPELLRDGDGTPAEAVIHYPGGLADFL 245

Query: 234 SYLDRHKKPLMQSPIR--IQGSRDNISIDLAMRWNDGYHENVLC-FTNNIPQKDGGTHLS 290
           +     ++ + + P    +        ++ A  W D   +  L  + N IP   GGTH +
Sbjct: 246 ASSIEGRRTIAERPFTGDVAAPDGQGRVEWAATWPDDQDDGFLHAYCNTIPTPQGGTHEA 305

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+AL R + +Y E     +  +  V  DD   G   +LS+ + DP+F  QTK++LVS 
Sbjct: 306 GLRTALLRGVKAYGEMVGNKRAAQ--VTADDLMGGACIMLSVFIRDPQFQGQTKDRLVSQ 363

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
               +VE  V D    WL   P  A ++++++++ +  R   R+ ++   RK       L
Sbjct: 364 NATRMVEQAVKDHFDHWLSGAPEIANLLLERLIERAEDRLRRRQQKE-VSRKTATRKLRL 422

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS  D   +E+FLVEGDSAGGSAKQ R R  QAILPLRGKILNV  A  DK+  
Sbjct: 423 PGKLADCSRSDADGTEIFLVEGDSAGGSAKQARERATQAILPLRGKILNVASASADKLRQ 482

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           +QE+  L+ ALG G G  SF +++LRY K++IMTDADVDGAHI +LL+TFF+R+MP LI 
Sbjct: 483 NQELADLVQALGCGAG-SSFKLDQLRYEKVVIMTDADVDGAHIASLLMTFFYREMPRLIE 541

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLR 588
            G L++  PPLY +T+G    Y +D+   ++ +      +           G +    L+
Sbjct: 542 EGHLFLAMPPLYRLTQGGKTVYARDDAHKDELMATAFSGKAKVEISRFKGLGEMPPMQLK 601

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
               +      L     P+     + +  +  
Sbjct: 602 ETTMNRQTRQLLRVRVPPSGGPGLVLEPELEA 633



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 20/202 (9%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    +LA+ +  +   +  S+       + +V      V    +    
Sbjct: 469 ILNVASASADKLRQNQELADLVQALGCGAGSSFKLDQLRYEKVVIMTDADVDGAHIASLL 528

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS---IGRKGISMQ 737
             F +    + I    +      +  L   G  +         D + +    G+  + + 
Sbjct: 529 MTFFYREMPRLIEEGHLFLAMPPLYRLTQGGKTVYARDDAH-KDELMATAFSGKAKVEIS 587

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI----------TDASQAD-----DLFSRLMG 782
           R+KGLGEM   QL ETT+N  TR LLRV++              +A+     ++   LMG
Sbjct: 588 RFKGLGEMPPMQLKETTMNRQTRQLLRVRVPPSGGPGLVLEPELEAETRRTSEMVESLMG 647

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
            + E R  +IQ N+     +D+
Sbjct: 648 KKPELRFAYIQANARFVHDVDV 669


>gi|259418258|ref|ZP_05742176.1| DNA topoisomerase IV, B subunit [Silicibacter sp. TrichCH4B]
 gi|259345653|gb|EEW57497.1| DNA topoisomerase IV, B subunit [Silicibacter sp. TrichCH4B]
          Length = 652

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/655 (36%), Positives = 345/655 (52%), Gaps = 22/655 (3%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D++     + +YDA SI++L+GL+ V++RP MYIG TD E  LHHM+ E+LDN++DE+
Sbjct: 1   MADDLLSPSSSDTYDASSIEVLEGLEPVRQRPGMYIGGTD-ERALHHMVAEILDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I V L+ D S TV DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGHANRIEVELHEDYSLTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  L +++ +   ++E  F  G     +   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGSSVVNALSDSLVVQVAKNKELFEQRFSRGKPLGGVEKIGAAPNRRGTTVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFV 233
               +IF    F    L   +R  ++L S V+I      +    P+E T  + GG+  ++
Sbjct: 180 HADEEIFGSHRFKPARLFKLVRSKAYLFSGVEIRWKSAITDGETPQEATFHFPGGLRDYL 239

Query: 234 SYLDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + +                   +   +   ++ A+ W          + N +P  +GGTH
Sbjct: 240 TEVLGKSSVYADAPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  +A+ + I +Y E     K  +  +  DD   G  +++S  + DP F  QTK++L 
Sbjct: 300 VAGFWAAILKGIKAYGELVGNKKAAQ--ITRDDLMAGGCALVSCFIADPAFVGQTKDRLS 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +     +VE+ V D    WL      A  I+  ++  +  R   ++ ++ T+RK      
Sbjct: 358 TEGAAKMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRKQEKE-TQRKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +D   +ELF+VEGDSAGGS K  R RE QA+LPL+GKILNV  A   K+
Sbjct: 417 RLPGKLTDCTSKDRAGTELFIVEGDSAGGSGKGARHREYQALLPLKGKILNVLGAASGKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+ EI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 477 TSNAEIRDLCEALGVGLG-TKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G    Y  DE   + +L      +           G +   D
Sbjct: 536 IDGGHLYLACPPLFRLTQGAKRVYCLDEAERDMWLEKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+           I   I +  P      +E+ +           + N     +L
Sbjct: 596 LKETTMDPKTRKLIQVTIDEDEPGETGDLVERLMGKKPELRFQYIQENAKFVEEL 650



 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 5/202 (2%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            H +      +   + N        ++  +++ +    +       ++      D ++  
Sbjct: 451 RHREYQALLPLKGKILNVLGAASGKLTSNAEIRDLCEALGVGLGTKFNLDDLRYDKIIIM 510

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F F      I    +      +  L     ++           +
Sbjct: 511 TDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACPPLFRLTQGAKRVYCLDEAERDMWL 570

Query: 727 FS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMG 782
              +G KG I + R+KGLGEM+A  L ETT++P TR L++V I +    +  DL  RLMG
Sbjct: 571 EKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPKTRKLIQVTIDEDEPGETGDLVERLMG 630

Query: 783 DEVEPRREFIQENSLPS-ALDI 803
            + E R ++IQEN+     LD+
Sbjct: 631 KKPELRFQYIQENAKFVEELDV 652


>gi|222086041|ref|YP_002544573.1| DNA topoisomerase IV, B subunit [Agrobacterium radiobacter K84]
 gi|221723489|gb|ACM26645.1| DNA topoisomerase IV, B subunit [Agrobacterium radiobacter K84]
          Length = 689

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/632 (36%), Positives = 345/632 (54%), Gaps = 23/632 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A+SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+AD
Sbjct: 43  TTSSAEEYGANSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHAD 101

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            I V L+  G  TV+DNGRGIP + H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLH
Sbjct: 102 FIEVHLDQRGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLH 161

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ + R   +Y   F  G+    L   G   N  GT V F P   I
Sbjct: 162 GVGVSVVNALSDDLEVEVARNRKLYRQRFSRGVPQGGLEELGDVHNRRGTRVRFHPDPQI 221

Query: 182 FSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVS 234
           F     F+   +    R  ++L   V+I               P +    + GG++ ++ 
Sbjct: 222 FGDHAKFDPARVFRMARSKAYLFGGVEIRWSCDPELAPAGSDVPDKAVFHFPGGLKDYLK 281

Query: 235 YLDRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
               ++  + +     +  +   + S++ A+ W  G    V  + N IP  +GGTH +GL
Sbjct: 282 ATMGNEFTVTREIFAGKSEKGTGHGSLEWAITWYGG-DPQVHSYCNTIPTPEGGTHEAGL 340

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALT+ + +Y E +   +     +  DD       +LSI + +P F  QTK++L + E 
Sbjct: 341 RIALTKGLKNYAELTQNKRAA--GITTDDVMISGVGMLSIFIREPEFVGQTKDRLATVEA 398

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE+ + D    +L ++P EA+ +++ V++        RR      RK  +    LPG
Sbjct: 399 QRIVENALRDPFDHYLTDNPTEAEKLLEWVIER-SEERLRRRKEKEVNRKTAVRKLRLPG 457

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+   + +ELFLVEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q
Sbjct: 458 KLADCSQNTAEGAELFLVEGDSAGGSAKQARNRMNQAILPLRGKILNVASAGREKLSANQ 517

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           +I  L+ ALG G  +  +    LRY +I++MTDADVDGAHI +LL+TFF+++MP L+  G
Sbjct: 518 QIADLVQALGCGT-RSKYREEDLRYQRIVVMTDADVDGAHIASLLITFFYQEMPELVRGG 576

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            L++  PPLY IT+G    Y +D+    + + +    +        KG+     L   + 
Sbjct: 577 HLFLAVPPLYKITQGSKSIYARDDAHRLELMESDFKGKGKIEISRFKGL--GEMLPAQLK 634

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
                +  +        +  I++    G  + 
Sbjct: 635 -----ETTMDPSKRTLLRVVIDEVDFEGTRDA 661



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +S   ++A+ +  +   +   +         +V      V    +    
Sbjct: 502 ILNVASAGREKLSANQQIADLVQALGCGTRSKYREEDLRYQRIVVMTDADVDGAHIASLL 561

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG---ISMQ 737
             F +    + +    +      +  +      I        L+ +     KG   I + 
Sbjct: 562 ITFFYQEMPELVRGGHLFLAVPPLYKITQGSKSIYARDDAHRLE-LMESDFKGKGKIEIS 620

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LLRV I   D     D    LMG + E R  FIQE 
Sbjct: 621 RFKGLGEMLPAQLKETTMDPSKRTLLRVVIDEVDFEGTRDAVDNLMGTKPEARFRFIQER 680

Query: 796 SLPS-ALDI 803
           +  +  LDI
Sbjct: 681 AAFAENLDI 689


>gi|149184516|ref|ZP_01862834.1| topoisomeraseB subunit [Erythrobacter sp. SD-21]
 gi|148831836|gb|EDL50269.1| topoisomeraseB subunit [Erythrobacter sp. SD-21]
          Length = 662

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/591 (38%), Positives = 340/591 (57%), Gaps = 22/591 (3%)

Query: 1   MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MSD+        +  YDA SI++L+GL+ V++RP MYIG TD    LHH++ EVLDN++D
Sbjct: 1   MSDDLFENTPTSSGDYDASSIEVLEGLEPVRRRPGMYIGGTDD-RALHHLVAEVLDNSMD 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKS 113
           E++ G+A  I V L+ +   T++DNGRG+P   H +  G S  EVI+T LH+GGKF+ K+
Sbjct: 60  EAVAGHASRIEVRLDENNRVTITDNGRGMPVAEHPKYPGKSTLEVILTTLHSGGKFSGKA 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y  SGGLHGVGVSVVNALS + ++ + R+  +Y   F  G     +   G   N  GT V
Sbjct: 120 YATSGGLHGVGVSVVNALSDYTRVEVARDKTLYAQEFSKGAPKGGIEELGPTPNRRGTTV 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGI 229
           TF+P ++IF  + F+   L    R  ++L + V+I      S    ++       + GG+
Sbjct: 180 TFIPDTEIFGDRKFSAKRLFKLARSKAYLFAGVEIRWKCAESLTSDDVPAEAVFKFPGGL 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGS------RDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
              ++     ++ +   P             +   ++ A+ W      +   + N +P  
Sbjct: 240 ADHLAEQIGGRECVTAQPFAGSQEFPETDGMEQGRVEWAIAWPLYSDGSTSWYCNTVPTP 299

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTH  GLR+ALT+ + ++ E +   K     +  DD   G   +LS+ + DP+F SQT
Sbjct: 300 DGGTHEQGLRAALTKGLRAFGELTGTKKAKD--LTADDIMVGAEVMLSVFIRDPQFQSQT 357

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K++L S E   +VE+ V D    +L +     K ++ +V++    R   ++ R++ R+  
Sbjct: 358 KDRLTSPEAARLVENAVRDHFDHFLADSMDRGKALLGQVMERMDERLRRKQEREIKRKTA 417

Query: 404 VL-DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                  LPGKL DCS     ++ELF+VEGDSAGGSAKQ R+R+ QAILP+RGKILNV  
Sbjct: 418 TNAKKLRLPGKLTDCSGEGDGETELFIVEGDSAGGSAKQARNRKTQAILPIRGKILNVAS 477

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A  DK+ ++ EI  L  A+G G  +D  D   LRY +IIIMTDADVDGAHI TLL+TFFF
Sbjct: 478 ATADKIRANSEIADLSLAMGCGTRKDC-DAENLRYDRIIIMTDADVDGAHIATLLMTFFF 536

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           ++MP ++ NG LY+ +PPLY +T GK  +Y +D+E  ++        +++E
Sbjct: 537 QEMPDIVRNGHLYLAQPPLYRLTAGKESRYARDDEHRKELEETVFKGKKVE 587



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 6/81 (7%)

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADD 775
             L +T+F  G+K + + R+KGLGEMN +QL ETT++PDTRSL+R+ +       +   +
Sbjct: 574 KELEETVFK-GKK-VEVGRFKGLGEMNPAQLRETTMDPDTRSLIRITLPAEFEQRAVVKE 631

Query: 776 LFSRLMGDEVEPRREFIQENS 796
           L  +LMG   E R  FIQ N+
Sbjct: 632 LVDQLMGRNPEHRFNFIQNNA 652


>gi|28565760|gb|AAO43432.1| DNA gyrase subunit B [Entomoplasma luminosum]
          Length = 555

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/544 (44%), Positives = 352/544 (64%), Gaps = 11/544 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T   +GLHH+++E+LDN+IDE + GYA  + VT+  +    V D+GRGIP  +++
Sbjct: 1   MYIGSTSK-TGLHHLVWEILDNSIDEVMAGYAQHVKVTITKEDEIIVQDDGRGIPVGINQ 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + G  A E++ T+LHAGGKF+  SYKVSGGLHGVG SVVNALS ++ + ++R+G  Y M 
Sbjct: 60  DTGRPAVELVFTQLHAGGKFDSDSYKVSGGLHGVGASVVNALSLYVDVIVERDGKKYHML 119

Query: 150 FIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQ 207
           F + G     L + G + + TGT V F P ++IF     F+Y T+++++++L++LN  ++
Sbjct: 120 FSDGGTKQTELAILGDS-DKTGTTVRFKPDAEIFKETTTFDYITIRNKVKQLAYLNKGLK 178

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR----DNISIDLAM 263
           I+L D+R  +   +   +  GI  ++   +  K  +  +   + G       +I +++A+
Sbjct: 179 ITLNDERINKS--VNFHFPNGIVDYIREENESKSKINPTIFYVDGKEAGDDGDIEVEIAL 236

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           ++N  Y+EN++ F NNI   +GG H  GLR AL R I  Y EK     K  +    DD +
Sbjct: 237 QYNSEYNENLITFVNNINTHEGGAHEDGLRQALVRIINRYAEKVAQQNKQPQKFSWDDIK 296

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG   +LS++  DP+F  QTK KL + + + VV++ +      +L E+P +AK I+ K  
Sbjct: 297 EGMICILSVRHTDPQFEGQTKTKLANPDTKRVVDAVLGKSFEEFLFENPNDAKAILDKNN 356

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A   R AA++AR+ TRRKG LD  SLPGKLADC   D   SEL+LVEGDSAGGSAK GR
Sbjct: 357 NAQKARIAAQKAREETRRKGALDTFSLPGKLADCETNDSSISELYLVEGDSAGGSAKTGR 416

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           +R  QAILPLRGK+LNVER +  +  ++ EI +++TA+GTGI +D  +++K+RY KI+IM
Sbjct: 417 NRHFQAILPLRGKVLNVERVQEVRAFANTEIKSIVTAIGTGIKEDI-NLSKIRYEKIVIM 475

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TDADVDGAHIRTLLLTFF+R M  L+ NG +YI +PPL+ I  GK L Y   ++ LE   
Sbjct: 476 TDADVDGAHIRTLLLTFFYRYMKPLVQNGNIYIAQPPLFKIEAGKKLAYAYSDQELETLK 535

Query: 564 INQS 567
            N+ 
Sbjct: 536 ANEF 539



 Score = 46.5 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 7/143 (4%)

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             H +  +   +   V N E  QE+     +++ + +  I    ++  + S    + +V 
Sbjct: 417 NRHFQAIL--PLRGKVLNVERVQEVRAFANTEIKSIVTAIGTGIKEDINLSKIRYEKIVI 474

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
                V    +      F +      + +  I       L  I  G K+        L+T
Sbjct: 475 MTDADVDGAHIRTLLLTFFYRYMKPLVQNGNIY-IAQPPLFKIEAGKKLAYAYSDQELET 533

Query: 726 IFSI---GRKGISMQRYKGLGEM 745
           + +    G++  ++QRYKGLGEM
Sbjct: 534 LKANEFNGQR-YTIQRYKGLGEM 555


>gi|46201803|ref|ZP_00054300.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 638

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 243/577 (42%), Positives = 340/577 (58%), Gaps = 21/577 (3%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD       + + Y A  I++L+GL+ V++RP MYIG TD    LHH++ EVLDN++DE
Sbjct: 1   MSDLFQQLAPKATEYSAKDIEVLEGLEPVRRRPGMYIGGTDD-RALHHLVAEVLDNSMDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSY 114
           ++ G+A  I + L +DG+CTV DNGRGIP D H +    SA EVI+T LH+GGKF   +Y
Sbjct: 60  AVAGHAGWIELELAVDGTCTVRDNGRGIPVDPHPKYPDKSALEVILTTLHSGGKFGGDAY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  + + + R+  ++   F  G+   PL   G   N  GT V 
Sbjct: 120 KVSGGLHGVGVSVVNALSDAMTVEVARDRVLWSQRFSRGLPLGPLEKVGPVQNRRGTTVI 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRL-RELSFLNSSVQISLIDKR------SPEPREITMFYKG 227
           F P + IF  +        +R+ R  ++L   VQI               P E T+ + G
Sbjct: 180 FHPDAQIFGERAQLRPGPLYRMARSKAYLFRGVQIRWKCDPLLIKDGDEIPAEDTLHFPG 239

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKD 284
           G+  F+  + + +  + +         S D   ++ A+ W D   E  V  + N +P  +
Sbjct: 240 GLTDFLKAVLKERPLVTKDVFNGTAPLSDDMGQLEWAVAWPDDDEEGFVNTYCNTVPTPE 299

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH +G R+ALT+ + +Y E +         +  +D   G   ++S+ + DP+F  QTK
Sbjct: 300 GGTHEAGFRNALTKGLRAYGEMAGNK--KAGQITAEDVMVGACVMVSLFIRDPQFQGQTK 357

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           EKL S E   +VE+ V D    WL      A  ++ ++++ +  R   R+A+++  RK  
Sbjct: 358 EKLASPEATRLVENAVKDHFDHWLSGDKASAAALLTRLIEKAEDRARRRQAKEMN-RKTP 416

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
                LPGKLADCS      +ELFLVEGDSAGGSAK GR+RE QAILPLRGKILNV  A 
Sbjct: 417 TKRLRLPGKLADCSRSVNVGTELFLVEGDSAGGSAKSGRNRETQAILPLRGKILNVASAS 476

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            DK+  +QE+  L+ ALG G  +DS+D  KLRY KIIIMTDADVDGAHI +LL+TFF+++
Sbjct: 477 TDKLRQNQELKDLMEALGCG-ARDSYDDEKLRYEKIIIMTDADVDGAHIASLLMTFFYQE 535

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MP LI NG LY+  PPLY +  G+++ Y +D+   E+
Sbjct: 536 MPDLIRNGHLYLALPPLYRLAHGQTVIYGRDDAHKEE 572


>gi|159043301|ref|YP_001532095.1| DNA topoisomerase IV subunit B [Dinoroseobacter shibae DFL 12]
 gi|157911061|gb|ABV92494.1| DNA topoisomerase IV, B subunit [Dinoroseobacter shibae DFL 12]
          Length = 654

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/643 (35%), Positives = 330/643 (51%), Gaps = 17/643 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YDA SIQ+L+ ++ V+ RP MYIG  D    LHHM+ E++DN++DE++ G+A  I V 
Sbjct: 15  ATYDASSIQVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIIDNSMDEAVAGHATWIEVE 73

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ +G  +V DNGRGIPTD H +    SA EVI   L+AGGKF+  SY+ SGGLHGVG S
Sbjct: 74  LHANGHVSVRDNGRGIPTDPHPKTPDKSALEVIFCTLNAGGKFSGDSYETSGGLHGVGSS 133

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L++ + R   +Y M F  G+    L   G+A N  GT VTF P  +IF    
Sbjct: 134 VVNALSDHLRVEVARNRELYAMEFSRGVPQGKLAKIGAAPNRRGTAVTFHPDPEIFGSLA 193

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--TMFYKGGIEAFVSYL----DRHK 240
                L    R  ++L S V+I               T  + GG+  +++        + 
Sbjct: 194 LKPARLFKMARSKAYLFSGVEIRWKTAIDDGDTPEEATFHFPGGLSDYLNETLGQAATYA 253

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
                  +  +       ++ A+ W       +  + N +P  +GGTH +G  +A+ + I
Sbjct: 254 DAPFSGTVSFEKFGRPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEAGFWAAILKGI 313

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y E    S +   ++  +D   G  +++S  + +P F  QTK++L + E + +VE+ V
Sbjct: 314 KAYGE--LVSNRKASTITREDLITGAGALVSCFIREPEFVGQTKDRLATVEAQRMVENAV 371

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D    WL      A  I+  ++         RR    T RK       LPGKL DCS  
Sbjct: 372 RDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETARKSATKRLRLPGKLVDCSAT 430

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +   +ELF+VEGDSAGGSAK  R R+ QA+LPLRGKILNV  A   K+ S+QEI  L  A
Sbjct: 431 NRAGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNQEISDLTQA 490

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LG G+G   F+I  LRY KIIIMTDADVDGAHI +LL+TFFF QM  +I  G LY+  PP
Sbjct: 491 LGVGLGSK-FNIEDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLYLACPP 549

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI---DDAL 595
           L+ +T+G    Y  DE   + +L      +           G +   DL++     +   
Sbjct: 550 LFRLTQGAKRVYCLDEAERDAWLEKGLGGKGKIDVSRFKGLGEMDAKDLKDTTMNPETRK 609

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            I   I +  P      +E+ +           + N     +L
Sbjct: 610 LIRVSIDEDEPGETGDLVERLMGKKPEKRFEYIQENARFVEEL 652



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++      D ++      V    +      F F      I +  +      +  L     
Sbjct: 499 FNIEDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLYLACPPLFRLTQGAK 558

Query: 713 KIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++           +   +G KG I + R+KGLGEM+A  L +TT+NP+TR L+RV I + 
Sbjct: 559 RVYCLDEAERDAWLEKGLGGKGKIDVSRFKGLGEMDAKDLKDTTMNPETRKLIRVSIDED 618

Query: 771 S--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
              +  DL  RLMG + E R E+IQEN+     LD+
Sbjct: 619 EPGETGDLVERLMGKKPEKRFEYIQENARFVEELDV 654


>gi|323342062|ref|ZP_08082295.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464487|gb|EFY09680.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 639

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 250/647 (38%), Positives = 376/647 (58%), Gaps = 19/647 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++   +Y A SI+IL+GL+AV+KRP MYIG TD   GLHH+++E++DNAIDE+L GY  
Sbjct: 2   ESLSTQNYSASSIEILEGLEAVRKRPGMYIGSTDS-RGLHHLVWEIMDNAIDEALNGYGT 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGGLH 121
            I + +  D + ++ D GRG+P + H   G+SA +VI T LHAGGKF++   YK SGGLH
Sbjct: 61  TIRLNIEDDMTVSIRDEGRGMPIETH-TSGVSALQVIFTVLHAGGKFSEAGGYKTSGGLH 119

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           GVG SVVNALS  + + + R+   Y M+F N G    PL  T   G   G+ V F     
Sbjct: 120 GVGASVVNALSEEVNVSVFRKDGTYNMTFRNGGKEIEPLKKTSDRGPI-GSRVRFKADPT 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F++DT+  R++E +FL   +Q  + D+R    RE     + G+EAF+ Y+   +
Sbjct: 179 IFKNSKFSFDTICERVQESAFLLQGIQFIVTDERVNVTREYRY--EKGLEAFMEYIHEDQ 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + L    I + GS   IS+ +A+++N+GY+E+   + N +   DGGTH++G RS  T+ I
Sbjct: 237 EVLN-DVILLNGSDQGISVQIALQYNEGYNEDTYSYVNLVRTHDGGTHVAGFRSGFTKVI 295

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358
             +  K    K  +++  G+D REG + +LS+ +P+   +F  QTK KL +   + VV++
Sbjct: 296 NEWARKHNLLKDKEKNFEGNDVREGLSVILSVSIPENLLQFEGQTKGKLGTPVAKGVVDA 355

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADC 417
            +++ L  +L+ H  EA  I+ K+  AS  R AAR+AR+  R  K       L GKLA+ 
Sbjct: 356 VISEQLPYYLDVHHEEATKIITKIQKASHARLAARKAREQARNGKRNKIERILSGKLANA 415

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
             R+  K+EL+LVEGDSAGGSAKQGR  + QAILPLRGK+LN ++A+F+ +L ++E+ T+
Sbjct: 416 QTRNKNKNELYLVEGDSAGGSAKQGRDSKFQAILPLRGKVLNTQKAKFEDILKNEELNTI 475

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I  +G G+G+D F++    Y+KIIIMTDAD DGAHI+ LLLTFFFR M  L+  G++YI 
Sbjct: 476 IHCVGAGVGKD-FELKDCNYNKIIIMTDADTDGAHIQVLLLTFFFRHMRPLVEAGYVYIA 534

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY +  GK++ Y   E+ L+ +       +         G ++ + L         +
Sbjct: 535 QPPLYRVKSGKNVHYAYTEDELDAFRKQY--GKIELQRYKGLGEMNADQLWET-----TM 587

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           D   +         F+       V   +        +   +A  L  
Sbjct: 588 DPETRSLIQVQINDFLVADKRVSVLMGDKVDVRREWIEQNVAFTLEE 634



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
             L  + +G  +        LD       K I +QRYKGLGEMNA QLWETT++P+TRSL
Sbjct: 536 PPLYRVKSGKNVHYAYTEDELDAFRKQYGK-IELQRYKGLGEMNADQLWETTMDPETRSL 594

Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           ++V+I D   AD   S LMGD+V+ RRE+I++N
Sbjct: 595 IQVQINDFLVADKRVSVLMGDKVDVRREWIEQN 627


>gi|159184842|ref|NP_354616.2| DNA topoisomerase IV subunit B [Agrobacterium tumefaciens str. C58]
 gi|159140126|gb|AAK87401.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
          Length = 710

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/647 (35%), Positives = 346/647 (53%), Gaps = 20/647 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            +  Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I 
Sbjct: 68  SSDDYGASSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIE 126

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L+ +G  TV+DNGRGIP + H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 127 VHLDAEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVG 186

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ + R   +Y   F  G     L   G   N  GT V F P   IF  
Sbjct: 187 VSVVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRRGTRVRFHPDPQIFGD 246

Query: 185 Q-DFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F    +    R  ++L   V+I               P +    + GG++ +++   
Sbjct: 247 HAKFEPARIFRMARSKAYLFGGVEIRWSCDPGMVPADGEIPEKAVFHFPGGLKDYLAATL 306

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             +  + +     +  +   + +++ A+ W  G    +  + N IP  +GGTH +G R A
Sbjct: 307 GKEFTVTREIFSGRTEKTGGHGALEWAVTWYGG-DTQIHSYCNTIPTPEGGTHEAGFRIA 365

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT+ + +Y E +   +  +  +  DD       +LS+ + +P F  QTK+KL + E + +
Sbjct: 366 LTKGLKNYAELTQNKRARE--ITTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRI 423

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ + D    +L  +P EA  ++  V++        RR      RK  +    LPGKLA
Sbjct: 424 VENALRDPFDHYLTGNPGEAAKLLDWVIER-AEERLRRRKEKEVNRKTAVRKLRLPGKLA 482

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS+   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I 
Sbjct: 483 DCSQNTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQQIA 542

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G  +  +    LRY +IIIMTDADVDGAHI +LL+TFF+++MP LI    LY
Sbjct: 543 DLIQALGCGT-RTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNHLY 601

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL-FCDSKGVISKNDLRNFI--- 591
           +  PPLY I +G    Y +D+    + +      +++E+      G +    L+      
Sbjct: 602 LAVPPLYVIRQGAKSAYARDDAHRAELMETVFKGKKVEIGRFKGLGEMMAAQLKETTMDP 661

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           +    +   I D      +  ++  + +         +   + A  L
Sbjct: 662 EKRTLLRVEIDDVDFEGTREAVDNLMGTKADARFRFIQERAAFADNL 708



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +S   ++A+ +  +   +   +       + ++      V    +    
Sbjct: 524 ILNVGSASREKLSANQQIADLIQALGCGTRTKYREEDLRYERIIIMTDADVDGAHIASLL 583

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISM 736
             F +    + I  N +    +  L +I  G K            L++T+F  G+K + +
Sbjct: 584 ITFFYQEMPELIRGNHLY-LAVPPLYVIRQGAKSAYARDDAHRAELMETVFK-GKK-VEI 640

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQE 794
            R+KGLGEM A+QL ETT++P+ R+LLRV+I D       +    LMG + + R  FIQE
Sbjct: 641 GRFKGLGEMMAAQLKETTMDPEKRTLLRVEIDDVDFEGTREAVDNLMGTKADARFRFIQE 700

Query: 795 NSLPS-ALDI 803
            +  +  LDI
Sbjct: 701 RAAFADNLDI 710


>gi|85374021|ref|YP_458083.1| DNA topoisomerase IV subunit B [Erythrobacter litoralis HTCC2594]
 gi|84787104|gb|ABC63286.1| topoisomeraseB subunit [Erythrobacter litoralis HTCC2594]
          Length = 658

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/637 (36%), Positives = 351/637 (55%), Gaps = 24/637 (3%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MSD++  +       YD+ SI++L+GL+ V++RP MYIG TD    LHH++ EVLDNA+D
Sbjct: 1   MSDDLFENTPASSGDYDSSSIEVLEGLEPVRRRPGMYIGGTDD-RALHHLVAEVLDNAMD 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKS 113
           E++ G+A  I +TL    + +V+DNGRGIP D H +  G S  EVI++ LH+GGKF+ K+
Sbjct: 60  EAVAGHASRIAITLEEGNTVSVADNGRGIPVDEHPKFPGKSTLEVILSTLHSGGKFSGKA 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y  SGGLHGVGVSVVNALSS+ ++ + R+  +Y   F  G     +   G   N  GT V
Sbjct: 120 YATSGGLHGVGVSVVNALSSYTRVEVARDRELYAQEFSKGQALGKIEKLGPTPNRRGTTV 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGI 229
           TF P ++IF  + F    L    R  ++L + V+I      S    ++       + GG+
Sbjct: 180 TFTPDTEIFGDRQFKPARLFKLARSKAYLFAGVEIRWKCAPSLASDDVPEEAVFKFPGGL 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
              +      ++ +   P         ++  ++ A+ W      +   + N +P  DGGT
Sbjct: 240 ADHLKEQVGERECVTADPFTGSQDFPDNHGRVEWAIAWPLYSDGSTSWYCNTVPTPDGGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  GLR+ALT+ +  + E +   K     +  DD   G   +LS+ + DP+F SQTK++L
Sbjct: 300 HEQGLRAALTKGLRVFGELTGTKKAKD--ISADDVMTGAEIMLSVFIRDPQFQSQTKDRL 357

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL-D 406
            S E   +VE+ V D    +L ++    K ++  V++    R   ++ R++ R+      
Sbjct: 358 TSPEASRLVENAVRDHFDHFLSDNMERGKALLGSVMERMEERLRRKQEREIKRKTATNAK 417

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              LPGKL DCS     ++ELF+VEGDSAGGSAKQ R R+ QAILP+RGKILNV  A  D
Sbjct: 418 KLRLPGKLTDCSGETDAETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATAD 477

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           K+ ++QEI  L  A+G G  +D  D   LRY +IIIMTDADVDGAHI TLL+TFFF++M 
Sbjct: 478 KIRANQEIADLSLAMGCGTRKDC-DPENLRYDRIIIMTDADVDGAHIATLLMTFFFQEMS 536

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKN 585
            ++ NG LY+ +PPLY +T GK  +Y +DE   ++        +++        G ++  
Sbjct: 537 EVVRNGHLYLAQPPLYRLTAGKESRYAQDEAHRQELEGTVFKGKKVDVARFKGLGEMNPQ 596

Query: 586 DLRNF-----IDDALKIDKLIKDFYPNHDKTFIEQAV 617
            LR           ++I    +       K  +++ +
Sbjct: 597 QLRETTMNPETRSLIRITLPAEHEQRFAVKELVDRLM 633



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADDLFSRLMGDEV 785
           G+K + + R+KGLGEMN  QL ETT+NP+TRSL+R+ +           +L  RLMG   
Sbjct: 579 GKK-VDVARFKGLGEMNPQQLRETTMNPETRSLIRITLPAEHEQRFAVKELVDRLMGRNP 637

Query: 786 EPRREFIQENS 796
           E R  FIQ  +
Sbjct: 638 EHRFNFIQNRA 648


>gi|83952846|ref|ZP_00961576.1| DNA topoisomerase IV subunit B [Roseovarius nubinhibens ISM]
 gi|83835981|gb|EAP75280.1| DNA topoisomerase IV subunit B [Roseovarius nubinhibens ISM]
          Length = 652

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/655 (35%), Positives = 329/655 (50%), Gaps = 22/655 (3%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD++         YDA SIQ+L+ ++ V+ RP MYIG  D    LHHM+ E++DN++DE
Sbjct: 1   MSDDLLTQMPDSGDYDASSIQVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIIDNSMDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSY 114
           ++ G+A  I V L+ +G  +V DNGRGIPT  H +    SA E+I   L+AGGKF+  SY
Sbjct: 60  AVAGHATWIEVELHENGHVSVRDNGRGIPTGPHPKDPSKSALEIIFCTLNAGGKFSGDSY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + SGGLHGVG SVVNALS  L++ + R   ++ M F  G+    L   G+A N  GT VT
Sbjct: 120 ETSGGLHGVGSSVVNALSDHLRVEVARNKELFAMEFSRGVPQGKLEKIGAAPNRRGTAVT 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAF 232
           F P  +IF         L    R  ++L S V+I           P E    + GG+  +
Sbjct: 180 FHPDPEIFGSLKLKPHRLFKMARSKAYLFSGVEIRWKSAIPDGDTPMEAKFHFPGGLSDY 239

Query: 233 VSYLDRHKKPLMQSPI----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +           + P       +       ++ A+ W       +  + N +P  +GGTH
Sbjct: 240 LKEAMGGATTYAEVPFAGTVSFEKFNAPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G  +A+ + I +Y E           +  +D   G  +++S  + +P F  QTK++L 
Sbjct: 300 EAGFWAAILKGIKAYGELVGNK--KAGQITREDLVTGAGALVSCFIREPEFVGQTKDRLA 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E + +VE+ V D    WL      A  I+  ++         RR    T+RK      
Sbjct: 358 TTEAQRMVENSVRDHFDNWLASDTKSAGAILDFLVLR-AEERLRRRQEKETQRKTATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DCS      +ELF+VEGDSAGGSAK  R+R NQA+LPLRGKILNV  A   K+
Sbjct: 417 RLPGKLVDCSTNVRDGTELFIVEGDSAGGSAKMARNRVNQALLPLRGKILNVLGAASSKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++ EI  L  ALG G+G   F+++ LRY K+IIMTDADVDGAHI +LL+TFFF QM  +
Sbjct: 477 GTNAEISDLTQALGVGLG-TKFNLDDLRYDKVIIMTDADVDGAHIASLLMTFFFTQMRPM 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPLY +T+G    Y  DE   + +L      +           G +   D
Sbjct: 536 IDAGHLYLACPPLYRLTQGAKRVYCLDEPERDSWLEKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+           I   I +  P      +E+ +           + N     +L
Sbjct: 596 LKETTMDPKTRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENARFVEEL 650



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I +  +      +  L     ++     
Sbjct: 504 YDKVIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLYLACPPLYRLTQGAKRVYCLDE 563

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I + R+KGLGEM+A  L ETT++P TR L+RV I +    +  D
Sbjct: 564 PERDSWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPKTRKLIRVTIDEDEPGETGD 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++IQEN+     LD+
Sbjct: 624 LVERLMGKKPELRFQYIQENARFVEELDV 652


>gi|251778309|ref|ZP_04821229.1| DNA gyrase subunit B [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082624|gb|EES48514.1| DNA gyrase subunit B [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 649

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/651 (35%), Positives = 361/651 (55%), Gaps = 34/651 (5%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            ++N++YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   GY D 
Sbjct: 2   ELKNNNYDVTDLTSLEKLEPVRIRPGMYIGST-GTKGLHHCIWEILDNAIDEITNGYGDK 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           +T+ LN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKF+ K+YK SGGLHGV
Sbjct: 61  VTIILNEDKSATIYDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDTGTE 172
           G +VVNALS W+++ + +  NIY   F             G   + L   G   + TGT+
Sbjct: 121 GAAVVNALSKWVEVEVYQNSNIYRQRFEYAFDKELKRSMPGTPVSKLQAIGKT-DKTGTK 179

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTF P S+IFS  DF +D +  RL+EL+F N  +++ LID+R  E  +   + + G+  F
Sbjct: 180 VTFKPDSEIFSSTDFKFDVIDSRLQELAFQNKGIRLELIDRRKDEEIQKEYYSENGLLDF 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++YL+  K  + ++PI   G R   ++    ++ +++ D   E +  + NNIP  + GTH
Sbjct: 240 INYLNESKTVIHETPIIFDGERTVSNLQVQGEICIQFTDSSTEYIASYVNNIPTTEAGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ +TR      ++    K+  +   G+D REG T++L IK+ +P F  QTK KL 
Sbjct: 300 ETGFKTGMTRAFKEGAKRLNLIKEKDKEFEGNDLREGMTAILRIKITNPIFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E  +++   V   L  W+E++   A  ++   L+++  R+  ++  D  ++K  +  A
Sbjct: 360 NNEAYTMMNDLVYTKLLEWIEDNKELATTLISNALESAKRREKIKKINDAEKKKVGVGTA 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            L GK+A C+ +D   +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + + +
Sbjct: 420 PLAGKIAVCTLKDKSVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENV 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           L+S+E+     A+GTG   +++  + ++Y K+IIM+DADVDG HIRTL +T+ +R M SL
Sbjct: 480 LASEELRIFNAAIGTGT-LENYKQDDMKYDKVIIMSDADVDGYHIRTLWMTYIYRYMRSL 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKN 585
           I NG LY+ +PPLY + +             ++ L           +       G ++  
Sbjct: 539 IANGHLYLAQPPLYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGALIQRYKGLGEMNPE 598

Query: 586 DLRN-------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            L                IDDA K +K+I     +  +         G FN
Sbjct: 599 QLWETTLNPETRTLIQVTIDDAAKAEKMISLLMGDVVEPRKNYMYKYGEFN 649



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 56/91 (61%)

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              +  +    + +K       L+       KG  +QRYKGLGEMN  QLWETTLNP+TR
Sbjct: 551 LYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGALIQRYKGLGEMNPEQLWETTLNPETR 610

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +L++V I DA++A+ + S LMGD VEPR+ +
Sbjct: 611 TLIQVTIDDAAKAEKMISLLMGDVVEPRKNY 641


>gi|193216448|ref|YP_001999690.1| topoiosmerase IV subunit B [Mycoplasma arthritidis 158L3-1]
 gi|193001771|gb|ACF06986.1| topoiosmerase IV subunit B [Mycoplasma arthritidis 158L3-1]
          Length = 637

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 246/589 (41%), Positives = 346/589 (58%), Gaps = 17/589 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y+A  +++LKGLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G+A  I VT
Sbjct: 2   SNYEASDLKVLKGLDAVRKRPGMYIGSTD-ITGLHHLVWEIVDNALDEALAGFATDIKVT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V DNGRGIP   H   G +  E++ T LHAGGKF++  YK SGGLHGVG SV
Sbjct: 61  LKKDDSVIVEDNGRGIPVSKH-GSGKTGVELVFTELHAGGKFDEGVYKTSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  L +++ R+   Y+  F    +     V G      GT+V F P   IF    F
Sbjct: 120 VNALSEKLIVKVYRDKKEYKTVFEQDKIIEGTNVVGPTT-KHGTKVQFWPDKTIFKKTKF 178

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           + D ++ +LRE SFL  +++I    + S E   IT     GI+ ++ ++    K  + S 
Sbjct: 179 SSDIVKEKLREASFLIPNLKIHFNHEESGEA--ITFEAAEGIKEYIKFVGEG-KNFISSI 235

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
              +G+   I +++A+ + D Y EN+  F NN+  +DGGTH +  +SALT+ I  Y  + 
Sbjct: 236 FYAKGTFKKIEMEIALVYTDNYTENIYSFVNNVKTRDGGTHETAFKSALTKTINEYASQH 295

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365
               K+K +  GDD REG  +V+S+K+P+    F  QTK+KL + E R  VE F ++   
Sbjct: 296 N-LLKNKNNFEGDDVREGIIAVVSLKIPESILEFVGQTKDKLGTLEAREAVEDFFSEKFG 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL--DIASLPGKLADCSERDPK 423
            +L E+ L++  I+ K+  +   R AAR AR+  R+      +   L GKL     ++  
Sbjct: 355 FYLNENKLDSDKILNKIKKSYDARMAARTARNEIRKIKNKLENKKILSGKLTPAQTKNSS 414

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             ELFLVEGDSAGGSAK GR R  QAILPLRGK++N  +A+   +LS++EI T+I  +G 
Sbjct: 415 LKELFLVEGDSAGGSAKMGRDRNTQAILPLRGKVINTVKAKLTDILSNEEIATIINTIGA 474

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG   F+I   +Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY 
Sbjct: 475 GIG-QDFNIKNSQYGKIIIMTDADTDGAHIQVLLLTFFYRYMKKLIDAGMVYIALPPLYK 533

Query: 544 ITRGK---SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           +T         YV D++ L D  +    S          G ++ + L +
Sbjct: 534 LTVKGAKAKHFYVWDDDELRD--LTSKYSNYEIQRYKGLGEMNPDQLWD 580



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 96/255 (37%), Gaps = 9/255 (3%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I +    +        E   I   L  +  L        +KN   + + +   ++    
Sbjct: 370 KIKKSYDARMAARTARNEIRKIKNKLENKKILSGKLTPAQTKN---SSLKELFLVEGDSA 426

Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                  +    QA++     V N    +  ++    ++A  +N I     + ++   + 
Sbjct: 427 GGSAKMGRDRNTQAILPLRGKVINTVKAKLTDILSNEEIATIINTIGAGIGQDFNIKNSQ 486

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
              ++           +      F +    K I +  +      +  L   G K K    
Sbjct: 487 YGKIIIMTDADTDGAHIQVLLLTFFYRYMKKLIDAGMVYIALPPLYKLTVKGAKAKHFYV 546

Query: 720 CSLLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
               D +  +  K     +QRYKGLGEMN  QLW+TT+NP+TRS+LRV+I D    +   
Sbjct: 547 WDD-DELRDLTSKYSNYEIQRYKGLGEMNPDQLWDTTMNPETRSILRVRINDEGLTERNV 605

Query: 778 SRLMGDEVEPRREFI 792
           + LM D++  R+ +I
Sbjct: 606 TTLMSDDINARKLWI 620


>gi|188588859|ref|YP_001920142.1| DNA topoisomerase IV subunit B [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499140|gb|ACD52276.1| DNA gyrase subunit B [Clostridium botulinum E3 str. Alaska E43]
          Length = 649

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/651 (35%), Positives = 361/651 (55%), Gaps = 34/651 (5%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            ++N++YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   GY D 
Sbjct: 2   ELKNNNYDVTDLTSLEKLEPVRIRPGMYIGST-GTKGLHHCIWEILDNAIDEITNGYGDK 60

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           +T+ LN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKF+ K+YK SGGLHGV
Sbjct: 61  VTIILNEDKSATIYDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDTGTE 172
           G +VVNALS W+++ + +  NIY   F             G   + L   G   + TGT+
Sbjct: 121 GAAVVNALSKWVEVEVYQNSNIYRQRFEYAFDKELKRSMPGTPVSKLQAIGKT-DKTGTK 179

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTF P S+IFS  DF +D +  RL+EL+F N  +++ LID+R  E  +   + + G+  F
Sbjct: 180 VTFKPDSEIFSSTDFKFDVIDSRLQELAFQNKGIRLELIDRRKDEEIQKEYYSENGLLDF 239

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++YL+  K  + ++PI   G R   ++    ++ +++ D   E +  + NNIP  + GTH
Sbjct: 240 INYLNESKTVIHETPIIFDGERTVNNLQVQGEICIQFTDSSTEYIASYVNNIPTTEAGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ +TR      ++    K+  +   G+D REG T++L IK+ +P F  QTK KL 
Sbjct: 300 ETGFKTGMTRAFKEGAKRLNLIKEKDKEFEGNDLREGMTAILRIKITNPIFEGQTKTKLG 359

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E  +++   V   L  W+E++   A  ++   L+++  R+  ++  D  ++K  +  A
Sbjct: 360 NNEAYTMMNDLVYTKLLEWIEDNKELATTLISNALESAKRREKIKKINDAEKKKVGVGTA 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            L GK+A C+ +D   +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + + +
Sbjct: 420 PLAGKIAVCTLKDKSVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENV 479

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           L+S+E+     A+GTG   +++  + ++Y K+IIM+DADVDG HIRTL +T+ +R M SL
Sbjct: 480 LASEELRIFNAAIGTGT-LENYKQDDMKYDKVIIMSDADVDGYHIRTLWMTYIYRYMRSL 538

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKN 585
           I NG LY+ +PPLY + +             ++ L           +       G ++  
Sbjct: 539 IANGHLYLAQPPLYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGALIQRYKGLGEMNPE 598

Query: 586 DLRN-------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            L                IDDA K +K+I     +  +         G FN
Sbjct: 599 QLWETTLNPETRTLIQVTIDDAAKAEKMISLLMGDVVEPRKNYMYKYGEFN 649



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 56/91 (61%)

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              +  +    + +K       L+       KG  +QRYKGLGEMN  QLWETTLNP+TR
Sbjct: 551 LYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGALIQRYKGLGEMNPEQLWETTLNPETR 610

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +L++V I DA++A+ + S LMGD VEPR+ +
Sbjct: 611 TLIQVTIDDAAKAEKMISLLMGDVVEPRKNY 641


>gi|315225745|ref|ZP_07867533.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
           denticolens DSM 10105]
 gi|315119877|gb|EFT83009.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
           denticolens DSM 10105]
          Length = 701

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 260/639 (40%), Positives = 368/639 (57%), Gaps = 28/639 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D +    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 35  DEMHPDHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAT 93

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D    EG S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 94  HIEVTILEDNGIRVVDDGRGIPVDEVPGEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHG 153

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSS 179
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      G     TGT VTF    
Sbjct: 154 VGISVVNALSTRVDVEVRRQGFHWTQTYIDQKPIAPLKKGQPMGE-EETTGTSVTFWADP 212

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----------------PREIT 222
            IF   D++++TL+ R ++++FLN  ++ISL D RS +                  + +T
Sbjct: 213 AIFDQTDYDFETLRARFQQMAFLNKGLKISLTDLRSVDQAGDEVTGDGDNPLEELHQTVT 272

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRI----QGSRDNISIDLAMRWNDGYHENVLCFTN 278
             Y  GIE +V+YL + KK        I    +  +  IS ++AM+W   Y E+V  F N
Sbjct: 273 YQYVNGIEDYVNYLVKTKKANPIEEDIIALDAEDPQQGISAEIAMQWTSAYSESVHTFAN 332

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALT  +  Y  +    K    ++ GDD REG  +V+S+K+  P+
Sbjct: 333 TISTTEGGTHEEGFRAALTSLVNRYAREKGILKDKDENLSGDDVREGLVAVISVKLTVPQ 392

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++  ++ V+  + + ++ W + HP EAK I++K ++A+  R AA++AR+ 
Sbjct: 393 FEGQTKTKLGNAIAKTFVQRVMTERMNDWFDAHPNEAKAIIQKGMEAARARLAAKKARET 452

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKIL
Sbjct: 453 TRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKIL 512

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N ERA FD+M+ S  I +LITA+G G G+D FDINK+RYHKIIIM DADVDGAHI TL L
Sbjct: 513 NTERASFDRMMKSDTIESLITAVGGGYGED-FDINKVRYHKIIIMADADVDGAHIATLNL 571

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCD 577
           T FFR +  +I+ G++Y+  PPLY +   K    +V  +   +  L             +
Sbjct: 572 TLFFRYIRPMIYAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLEEGRSKGRQLPKGE 631

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
                       + +                      QA
Sbjct: 632 GIQRYKGLGEMTYQELWETTMDPDHRILKQIHIEDAAQA 670



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D +   GR       KG  +QRYKGLGEM   +LWETT++PD R L ++ I DA+QAD+ 
Sbjct: 614 DRVLEEGRSKGRQLPKGEGIQRYKGLGEMTYQELWETTMDPDHRILKQIHIEDAAQADET 673

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMG++VEPRR FIQ N+  +
Sbjct: 674 FSMLMGEDVEPRRLFIQRNAHDA 696


>gi|294786215|ref|ZP_06751469.1| DNA gyrase, B subunit [Parascardovia denticolens F0305]
 gi|294485048|gb|EFG32682.1| DNA gyrase, B subunit [Parascardovia denticolens F0305]
          Length = 704

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 260/639 (40%), Positives = 368/639 (57%), Gaps = 28/639 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D +    YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 38  DEMHPDHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAT 96

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D    EG S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 97  HIEVTILEDNGIRVVDDGRGIPVDEVPGEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHG 156

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSS 179
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL      G     TGT VTF    
Sbjct: 157 VGISVVNALSTRVDVEVRRQGFHWTQTYIDQKPIAPLKKGQPMGE-EETTGTSVTFWADP 215

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----------------PREIT 222
            IF   D++++TL+ R ++++FLN  ++ISL D RS +                  + +T
Sbjct: 216 AIFDQTDYDFETLRARFQQMAFLNKGLKISLTDLRSVDQAGDEVTGDGDNPLEELHQTVT 275

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRI----QGSRDNISIDLAMRWNDGYHENVLCFTN 278
             Y  GIE +V+YL + KK        I    +  +  IS ++AM+W   Y E+V  F N
Sbjct: 276 YQYVNGIEDYVNYLVKTKKANPIEEDIIALDAEDPQQGISAEIAMQWTSAYSESVHTFAN 335

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALT  +  Y  +    K    ++ GDD REG  +V+S+K+  P+
Sbjct: 336 TISTTEGGTHEEGFRAALTSLVNRYAREKGILKDKDENLSGDDVREGLVAVISVKLTVPQ 395

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++  ++ V+  + + ++ W + HP EAK I++K ++A+  R AA++AR+ 
Sbjct: 396 FEGQTKTKLGNAIAKTFVQRVMTERMNDWFDAHPNEAKAIIQKGMEAARARLAAKKARET 455

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKIL
Sbjct: 456 TRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKIL 515

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N ERA FD+M+ S  I +LITA+G G G+D FDINK+RYHKIIIM DADVDGAHI TL L
Sbjct: 516 NTERASFDRMMKSDTIESLITAVGGGYGED-FDINKVRYHKIIIMADADVDGAHIATLNL 574

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCD 577
           T FFR +  +I+ G++Y+  PPLY +   K    +V  +   +  L             +
Sbjct: 575 TLFFRYIRPMIYAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLEEGRSKGRQLPKGE 634

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
                       + +                      QA
Sbjct: 635 GIQRYKGLGEMTYQELWETTMDPDHRILKQIHIEDAAQA 673



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D +   GR       KG  +QRYKGLGEM   +LWETT++PD R L ++ I DA+QAD+ 
Sbjct: 617 DRVLEEGRSKGRQLPKGEGIQRYKGLGEMTYQELWETTMDPDHRILKQIHIEDAAQADET 676

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMG++VEPRR FIQ N+  +
Sbjct: 677 FSMLMGEDVEPRRLFIQRNAHDA 699


>gi|70704840|gb|AAZ06862.1| DNA gyrase subunit B [Acholeplasma parvum]
 gi|70704870|gb|AAZ06863.1| DNA gyrase subunit B [Acholeplasma parvum]
          Length = 536

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 260/526 (49%), Positives = 352/526 (66%), Gaps = 4/526 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           GESGLHH+++E++DN+IDE+L GYAD IT+ +  D    V+DNGRGIP   H + G  A 
Sbjct: 2   GESGLHHLVWEIVDNSIDEALAGYADTITLEILKDNIIRVTDNGRGIPVGTHPKTGKPAV 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E I+T LHAGGKF+  SYKVSGGLHGVG SVVNALS W    +   G I+   F  G   
Sbjct: 62  ETILTTLHAGGKFDGSSYKVSGGLHGVGASVVNALSEWFIAEVHINGKIHRQRFERGEPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L + G   +  GT +TFL    +F     ++++TL+ R+++L+FLN +++I +ID R 
Sbjct: 122 TGLEIIGQT-DKKGTCITFLADPKVFIETTTYDFETLRARVQQLAFLNRNIKIEIIDDRE 180

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            EP      Y+GG+  ++ +L  +K  +  + +  +   DNISI++A+++ D Y  N+  
Sbjct: 181 EEPVSYAYHYEGGLLEYIDFLTTNKAKINSTKVYTEKEVDNISIEVAIQYTDTYITNIYS 240

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIP  +GG H  G + AL R +  Y + +    K   + I +D REG T+++S+K P
Sbjct: 241 FTNNIPTHEGGMHEDGFKMALNRVLAKYAKDAN-LLKKDEAFISEDTREGLTAIISVKHP 299

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL + EVR +    V +GL  +L E+P EAK I++K L AS  R AAR+A
Sbjct: 300 DPQFEGQTKTKLGNVEVRQITSQIVGEGLERFLLENPNEAKAIIEKCLLASRARLAARKA 359

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+ TRRK  LD      KLADC  ++P  SEL++VEGDSAGGSAKQGR  E QAILPLRG
Sbjct: 360 REATRRKSPLDALGFASKLADCRSKNPSISELYIVEGDSAGGSAKQGRESEYQAILPLRG 419

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNVE+AR D+ LS+QEI +LI A+GTG G++ FD +K RYHKI+IMTDADVDGAHIRT
Sbjct: 420 KVLNVEKARIDRALSNQEIISLIQAIGTGFGEE-FDGSKARYHKIVIMTDADVDGAHIRT 478

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           LLLTFFFR +  LI  G++Y  +PPLY I  GK ++YV +EE+L +
Sbjct: 479 LLLTFFFRFLRPLIDLGYIYFAQPPLYKIQSGKKIEYVYNEEALPE 524


>gi|227549441|ref|ZP_03979490.1| DNA gyrase subunit B [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078518|gb|EEI16481.1| DNA gyrase subunit B [Corynebacterium lipophiloflavum DSM 44291]
          Length = 662

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 265/665 (39%), Positives = 374/665 (56%), Gaps = 54/665 (8%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T G  GLHH+++EV+DN++DE++ GYAD + VTL  DG   V DNGRGIP ++H 
Sbjct: 1   MYIGST-GARGLHHLVWEVVDNSVDEAMAGYADRVDVTLLADGGIEVIDNGRGIPVEMHP 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
             G    +V+MT+LHAGGKF+ +SY VSGGLHGVG+SVVNALS+ ++  IKR+G  +  +
Sbjct: 60  S-GAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVVNALSTRVEADIKRDGKHWYQN 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F N +  + L   G+A   TGT + F P ++IF   +F+Y+T+  RL+E++FLN  + I+
Sbjct: 119 FTNAVP-HELEQGGNA-RGTGTTIRFWPDAEIFETIEFDYNTISRRLQEMAFLNKGLTIT 176

Query: 210 LIDKRSPEPREI------------------------------------------------ 221
           L D+R  +                                                    
Sbjct: 177 LKDERVTDEELELEAIVEEGDTAALVDGDSFDDTVVEESTGDDAGAEVAPAVQKKREKKV 236

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T  Y  G+  +V +L++ K P+  S I  +    +   ++AM+WN+G+ E+V  F N I 
Sbjct: 237 TYHYPNGLIDYVDHLNKSKTPIHPSVIGFEAKGTDHEAEVAMQWNNGFKESVHTFANTIN 296

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y       ++ + ++ G+DCREG ++++S+++ DP+F  
Sbjct: 297 THEGGTHEEGFRAALTSIMNRYARDHKLLREKEPNLTGEDCREGLSAIVSVRVGDPQFEG 356

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E++  V+  VN+ LS W + +P EAK+I+ K + +S  R AAR+ARDL RR
Sbjct: 357 QTKTKLGNTEIKGFVQRAVNEHLSDWFDANPAEAKVIINKAVSSSQARQAARKARDLVRR 416

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K   D+  LPGKLADC  +DPK SELF+VEGDSAGGSAKQGR    QAILPLRGKILNVE
Sbjct: 417 KSAGDMGGLPGKLADCRSKDPKASELFIVEGDSAGGSAKQGRDSMYQAILPLRGKILNVE 476

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR D++L + E+  +ITALGTGI  D FDI++LRYHKI++M DADVDG HI TLLLT  
Sbjct: 477 KARMDRVLKNAEVQAIITALGTGI-HDEFDISRLRYHKIVLMADADVDGQHIATLLLTLL 535

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           FR MP LI  G +Y+  PPLY +   K    Y   +   +  L     +       D   
Sbjct: 536 FRFMPELIEQGHVYLANPPLYKLKWAKGEPGYAFSDRERDAQLAEGQEAGRKINTDDGIQ 595

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   N  +                D    + A          D     S  ++ A 
Sbjct: 596 RYKGLGEMNPSELWETTLDPEHRILRRVDVEDAQHADELFSILMGDDVAARRSFITRKAK 655

Query: 641 RLNFI 645
            + F+
Sbjct: 656 DVRFL 660



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 728 SIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
               + I+    +QRYKGLGEMN S+LWETTL+P+ R L RV + DA  AD+LFS LMGD
Sbjct: 582 QEAGRKINTDDGIQRYKGLGEMNPSELWETTLDPEHRILRRVDVEDAQHADELFSILMGD 641

Query: 784 EVEPRREFIQENSLPSA-LDI 803
           +V  RR FI   +     LD+
Sbjct: 642 DVAARRSFITRKAKDVRFLDV 662


>gi|254460660|ref|ZP_05074076.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206677249|gb|EDZ41736.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 651

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/654 (36%), Positives = 338/654 (51%), Gaps = 21/654 (3%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MSD     + + YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE++
Sbjct: 1   MSDLLTGAEPTDYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEAV 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116
            G+A  I V L  D S  + DNGRGIP D H +    SA EVI+  LHAGGKF+  +Y+ 
Sbjct: 60  AGHASRIEVELLSDYSMVIKDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGDAYET 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG SVVNALS  + +++ R   +YE  F  GI   P+   G+A N  GT VTF 
Sbjct: 120 SGGLHGVGASVVNALSDSMVVQVARNKELYEQRFSRGIPLGPVEKVGAAPNRRGTTVTFH 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVS 234
               IF    F    L   +R  ++L S V+I    +      P   T  + GG+  +++
Sbjct: 180 ADEQIFGSHRFKPARLFKSIRSKAYLFSGVEIRWKSEIDDGETPTTATFHFPGGLADYLT 239

Query: 235 YLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                       P        +       ++ A+ W       +  + N +P  +GGTH 
Sbjct: 240 ESLGSASTYADKPFAWVVDFKEKFNAPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHE 299

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G  +A+ + I +Y E S   K    S+  DD   G  +++S  + +P F  QTK++L +
Sbjct: 300 AGFWAAILKGIRAYGELSNNKKAA--SITRDDLVTGGCALVSCFIREPEFVGQTKDRLAT 357

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            E +  VE  V D    WL      A  I+  ++         RR    T RK       
Sbjct: 358 VEAQKFVEGAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETARKSATKKLR 416

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS  + + +ELF+VEGDSAGGSAK GR+R+ QA+LPL+GKILNV  A   K+ 
Sbjct: 417 LPGKLVDCSNSNREGTELFIVEGDSAGGSAKMGRNRKTQALLPLKGKILNVLGAASGKIG 476

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++QEI  L  ALG G+G   F+++ LRY K+IIMTDADVDGAHI  LL+TFFF QM  +I
Sbjct: 477 TNQEINDLTQALGVGLG-TKFNVDDLRYEKVIIMTDADVDGAHIAALLMTFFFSQMRPMI 535

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDL 587
             G LY+  PPL+ +T+G +  Y  DE   + +L                  G +   DL
Sbjct: 536 DAGHLYLACPPLFRLTQGANRVYCLDEAEKKYHLEKGLGGRGKIDVSRFKGLGEMDAKDL 595

Query: 588 RNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           ++     +    I   I +  P      +E+ +           + N     +L
Sbjct: 596 KDTTMNPETRKLIRVTIDEDEPGETGDLVERLMGKKPEKRFEYIQENAQFVEEL 649



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 5/156 (3%)

Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712
           ++      + ++      V    +      F F      I +  +      +  L    +
Sbjct: 496 FNVDDLRYEKVIIMTDADVDGAHIAALLMTFFFSQMRPMIDAGHLYLACPPLFRLTQGAN 555

Query: 713 KIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++           +   +G +G I + R+KGLGEM+A  L +TT+NP+TR L+RV I + 
Sbjct: 556 RVYCLDEAEKKYHLEKGLGGRGKIDVSRFKGLGEMDAKDLKDTTMNPETRKLIRVTIDED 615

Query: 771 S--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
              +  DL  RLMG + E R E+IQEN+     LD+
Sbjct: 616 EPGETGDLVERLMGKKPEKRFEYIQENAQFVEELDV 651


>gi|197105032|ref|YP_002130409.1| topoisomerase IV, subunit B [Phenylobacterium zucineum HLK1]
 gi|196478452|gb|ACG77980.1| topoisomerase IV, subunit B [Phenylobacterium zucineum HLK1]
          Length = 684

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/650 (37%), Positives = 340/650 (52%), Gaps = 22/650 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++ S Y A  I++L+GL+ V+KRP MYIG TD E  LHH+  EVLDNA+DE++ G+A +I
Sbjct: 39  VKTSGYSAADIEVLEGLEPVRKRPGMYIGGTD-ERALHHLFAEVLDNAMDEAVAGHAKVI 97

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
            V+L+ DG+ TV D+GRGIP D H +  G SA EVIMT LH+GGKF+ K+Y+ SGGLHGV
Sbjct: 98  EVSLDADGALTVRDDGRGIPVDPHPKHPGKSALEVIMTVLHSGGKFSGKAYETSGGLHGV 157

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           GVSVVNALS  +++ + ++G  +  +F  G     +   G      GT ++FLP   IF 
Sbjct: 158 GVSVVNALSERVEVTVFKDGFEWRQAFTRGKPLGGIEKIGPT-RKKGTAISFLPDPVIFG 216

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGIEAFVSYLDR 238
               F    L    R  ++L   V+I             P E    +  G+  F++   +
Sbjct: 217 DGAAFKPARLYRMARSKAYLFGGVEIRWKCDPARIHDQTPAEAVFRFPNGLADFLAERIK 276

Query: 239 HKKPLMQSPIRIQGSRD------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
             + +   P   +  R         +I             +  + N +P  +GGTH SGL
Sbjct: 277 GLETVTPEPFTGRYERPGEAGKVEWAIAWTPAGFGEADSFMQSYCNTVPTPEGGTHESGL 336

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALT+ +  Y E     +     +  DD      +++S+ + DP F  QTKEKL S+E 
Sbjct: 337 RAALTKGLKQYAELVGEKRGG--LITADDVVAQAGALVSVFIRDPEFQGQTKEKLSSTEA 394

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE  + D    WL   P  A  +++ V++ +  R   RR ++   R        LPG
Sbjct: 395 QRLVEKALADPFDHWLTAQPKAAGALLQFVVERAEERLKRRRDKE-VARASATRKLRLPG 453

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC+      +ELFLVEGDSAGGSAKQ R R+NQAILPLRGKILNV  A  DK   ++
Sbjct: 454 KLADCAGNAIDGAELFLVEGDSAGGSAKQARDRKNQAILPLRGKILNVASASTDKFGGNK 513

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E+  L+ ALG   G   F  + LRY +IIIMTDADVDGAHI +LL+TFFFR MP +I  G
Sbjct: 514 ELSDLLLALGVQPGSK-FKEDDLRYERIIIMTDADVDGAHIASLLITFFFRTMPDMIRAG 572

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYL-INQSLSEEIELFCDSKGVISKNDLRNFI 591
            LY+  PPLY I+ G    Y +D+   ++ L       +         G +  N L+   
Sbjct: 573 RLYLALPPLYRISHGGKAVYARDDAHRDELLATEFKGKKPEISRFKGLGEMMPNQLKETT 632

Query: 592 DD--ALKIDKLIKDFYPNHDKTFIEQAV-ISGVFNCESDQEINVSLASKL 638
            D     + ++         +  +E  +           QE     A+ L
Sbjct: 633 MDPKTRTLARVTLPRAEETVEDLVEALMGRKPELRFRFIQENAEFAAADL 682



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 8/189 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S          +L++ L  +  +    +       + ++      V    +    
Sbjct: 498 ILNVASASTDKFGGNKELSDLLLALGVQPGSKFKEDDLRYERIIIMTDADVDGAHIASLL 557

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F F +    I + R+      +  +   G  +          LL T F  G+K   + 
Sbjct: 558 ITFFFRTMPDMIRAGRLYLALPPLYRISHGGKAVYARDDAHRDELLATEFK-GKK-PEIS 615

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA-DDLFSRLMGDEVEPRREFIQENS 796
           R+KGLGEM  +QL ETT++P TR+L RV +  A +  +DL   LMG + E R  FIQEN+
Sbjct: 616 RFKGLGEMMPNQLKETTMDPKTRTLARVTLPRAEETVEDLVEALMGRKPELRFRFIQENA 675

Query: 797 LPSA--LDI 803
             +A  LDI
Sbjct: 676 EFAAADLDI 684


>gi|158633805|gb|AAY85999.2| GyrB [Burkholderia cenocepacia]
          Length = 636

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 283/640 (44%), Positives = 400/640 (62%), Gaps = 20/640 (3%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P++VTG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV ++++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 AGGVKGFVEFINKTKSTLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVL
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+
Sbjct: 298 DGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARY 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGAHIRTLLLTF +RQM
Sbjct: 358 DKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQM 417

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS +
Sbjct: 418 PDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGD 477

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            L       L    +I+     +D   +E AV+ GV    S++E   + A  L   L+  
Sbjct: 478 ALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDE 536

Query: 646 AEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           A K+E      +        + V+R   G     V++     +   +     +N  +   
Sbjct: 537 ALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLI 596

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                +      + +    S +  + +   + +S QRYKG
Sbjct: 597 GEGAVIKRGERSMVVADFKSAMKWLLADAERNVSKQRYKG 636


>gi|254294168|ref|YP_003060191.1| DNA topoisomerase IV subunit B [Hirschia baltica ATCC 49814]
 gi|254042699|gb|ACT59494.1| DNA topoisomerase IV, B subunit [Hirschia baltica ATCC 49814]
          Length = 653

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/655 (34%), Positives = 342/655 (52%), Gaps = 22/655 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y A  I++L+GL+ V+KRP MYIG TD E   HH+  E+LDN++DE++ G+A  
Sbjct: 6   QAEKQEYSAKDIEVLEGLEPVRKRPGMYIGGTD-ERAFHHLFAEILDNSMDEAVAGHASR 64

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I V L  DG  +V D+GRGIP D H +  G SA EVIMT LH+GGKF+ K+Y+ +GGLHG
Sbjct: 65  IDVHLRADGYLSVRDDGRGIPVDPHPKFPGKSALEVIMTTLHSGGKFSNKAYQTAGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS  L++ + R+  +Y  +F  G    P+   G+A N  GT V+F P  +IF
Sbjct: 125 VGISVVNALSERLEVEVARDKKLYFQAFERGHSMGPIKQIGNAPNRRGTVVSFKPDFEIF 184

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSY 235
            +   F    L    +  ++L+   QI          +    P E  + Y  G+   +  
Sbjct: 185 GTKIQFKPARLYQMAKAKAYLHQGAQIHWKCDPELLKENDKTPTEAVLHYPNGLADMLKE 244

Query: 236 LDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +   K  +       +           ++  +             + N +P +DGGTH +
Sbjct: 245 MSEGKIMVTSDIFAGRVEMDNGAACEWAMCWSANGFGEEDGITRSYCNTVPTRDGGTHEA 304

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G+RSA+T+ + +Y E +         +  DD      ++LS+ + +P F  QTK+KL S 
Sbjct: 305 GMRSAITKGLRAYGELTNVK--KASQITADDILSSAGALLSVFIREPEFVGQTKDKLSSP 362

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E   V E  + D    WL   P EA  ++   ++ S +R   R+ ++   R+       L
Sbjct: 363 EGLRVAEGALRDRFDHWLTASPKEATKLLDWAIEQSDLRMRRRKEKE-VSRQSATRKLRL 421

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCS    + +E+F+VEGDSAGGSAKQ R+R+ QAILPLRGKILNV  A  DK+ +
Sbjct: 422 PGKLSDCSSNSKEDTEIFIVEGDSAGGSAKQARNRKTQAILPLRGKILNVASAGADKLRA 481

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           + E+  L TALGTGIG+  FDI+ LRY +++IMTDADVDGAHI  LL+TFF++QMP LI 
Sbjct: 482 NVELNDLATALGTGIGRK-FDIDDLRYQRVVIMTDADVDGAHIAALLITFFYKQMPDLIT 540

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           +G L++  PPLY +  G    Y +D+E  ++ +      + +E+            +   
Sbjct: 541 SGRLFMAMPPLYKLAAGNKSAYARDDEHKDELMRTMFKGKNVEVSRFKG---LGEMMPAQ 597

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
           + +   +D   +          +E              E         A  +  +
Sbjct: 598 LKE-TTMDPAKRSMARIALPDGLESPGELVETLMGKKAEHRFKFIQDNAEFVEEL 651



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA-DDLFSRLMGDEVEPRRE 790
           K + + R+KGLGEM  +QL ETT++P  RS+ R+ + D  ++  +L   LMG + E R +
Sbjct: 580 KNVEVSRFKGLGEMMPAQLKETTMDPAKRSMARIALPDGLESPGELVETLMGKKAEHRFK 639

Query: 791 FIQENSLPS-ALDI 803
           FIQ+N+     LDI
Sbjct: 640 FIQDNAEFVEELDI 653


>gi|315499760|ref|YP_004088563.1| DNA topoisomerase iv, b subunit [Asticcacaulis excentricus CB 48]
 gi|315417772|gb|ADU14412.1| DNA topoisomerase IV, B subunit [Asticcacaulis excentricus CB 48]
          Length = 668

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/571 (39%), Positives = 329/571 (57%), Gaps = 17/571 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A +I++L+GL+ V+KRP MYIG TD E  +HH+  EVLDNA+DE++ G+A  I V 
Sbjct: 27  EGYGASAIEVLEGLEPVRKRPGMYIGGTD-EKAMHHLFAEVLDNAMDEAVAGHAKAIWVE 85

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ +G  +V D+GRGIP D H +  G SA EV+MT LH+GGKF+ K+Y+ SGGLHGVGVS
Sbjct: 86  LDAEGYLSVRDDGRGIPVDPHPKYPGKSALEVVMTVLHSGGKFSGKAYETSGGLHGVGVS 145

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L++ + R+G  ++  F  G+   P+     +    GT   F P  +IF V  
Sbjct: 146 VVNALSEHLEVTVWRDGFEWQQVFSRGLSQGPIRQVAPSK-KRGTRERFKPDEEIFGVGA 204

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----ITMFYKGGIEAFVSYLDRHKK 241
            F    +    +  ++L   VQI      S            ++  G+  +++   +  +
Sbjct: 205 HFKPARIYRMAKAKAYLFRGVQIHWKCDPSQISDHTPAEDKFYFPNGLADYLAERVQETE 264

Query: 242 PLMQSPI-RIQGSRDNISIDLAMRW----NDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +      R++   +  +++ A+ W       +      + N IP  DGGTH +GLR+AL
Sbjct: 265 TVTDIFSGRVERQGEAGAVEWAVTWSGAGFGEFDGFTQSYCNTIPTPDGGTHEAGLRAAL 324

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y E +   +     +  +D       V+S+ + +P F  QTK++L SSE + +V
Sbjct: 325 TRSLKTYAEMTGDKRGG--IITAEDVVAQAGVVISVFIKNPEFQGQTKDRLSSSEAQRLV 382

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + D    WL   P +A  +++ V++ +  R   R+ ++  +R        LPGKLAD
Sbjct: 383 EKALADPFDHWLISSPKQADRLLQFVVERAEDRLKKRKDKE-VQRASATRKLRLPGKLAD 441

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C+ +D   +ELF+VEGDSAGGSAKQ R+R  QAILPLRGKILN+  A  DK  S+QE+  
Sbjct: 442 CARQDANGTELFIVEGDSAGGSAKQARNRNTQAILPLRGKILNIASATADKAKSNQELSD 501

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L  ALG   G   F  + LRY +I+IMTDADVDGAHI +LL+T+F+R MPS+I NG LY+
Sbjct: 502 LGLALGVQPGAR-FKEDDLRYERIVIMTDADVDGAHIASLLITYFYRTMPSMIRNGHLYL 560

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
             PPLY I+ G  + Y KD+    + L  + 
Sbjct: 561 AMPPLYRISHGTKIVYAKDDAHRLEILEKEF 591



 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 12/159 (7%)

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKY------KRIFSNRIEENYLTILSLI 708
                 D+  +RI   +     ++G+ I S    Y        I +  +      +  + 
Sbjct: 512 ARFKEDDLRYERIV--IMTDADVDGAHIASLLITYFYRTMPSMIRNGHLYLAMPPLYRIS 569

Query: 709 CNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                +        L+ +    + K   + R+KGLGEM  +QL ETT++P TR+L RV +
Sbjct: 570 HGTKIVYAKDDAHRLEILEKEFKGKKPEIGRFKGLGEMMPAQLKETTMDPKTRTLARVTL 629

Query: 768 -TDASQADDLFSRLMGDEVEPRREFIQENSLPS--ALDI 803
             + S  +DL   LMG + E R ++IQ+N+      LD+
Sbjct: 630 PENESDIEDLVETLMGRKPELRFKYIQQNAEFVGDDLDV 668


>gi|115381156|gb|ABI96227.1| DNA gyrase subunit B [Mesoplasma seiffertii]
          Length = 553

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 244/540 (45%), Positives = 349/540 (64%), Gaps = 7/540 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T   +GLHH+++E+LDN+IDE++ G A+ I+VT+  +G   V DNGRGIP  + ++ G
Sbjct: 1   GSTSK-TGLHHLVWEILDNSIDEAMAGEANTISVTITKEGEVIVEDNGRGIPVGIQEDSG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + + R+GN+Y   F +
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVLVMRDGNVYHQIFSD 119

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISL 210
            G     L + G   +  GT V F P  +IF     F+Y+T+++++++LS+LN  ++I+L
Sbjct: 120 GGTKQTELEILG-TTDKRGTIVRFKPDPEIFQETVTFDYETIRNKVKQLSYLNKGIKINL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D+R  +  E       GI  +V   +  K  +  S   + G  D+I +++A+++N  Y 
Sbjct: 179 TDQRIDKTVEYHF--PNGILDYVKEKNETKSKINPSVYYVDGKHDDIEVEVALQYNAEYQ 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN++ F NNI   +GG+H  GLR ALTR I  Y EK     K       DD +EG   ++
Sbjct: 237 ENLITFVNNINTHEGGSHEDGLRQALTRVINRYSEKVAKGTKAPSKYSWDDIKEGMVCIV 296

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SI+  DP++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   R 
Sbjct: 297 SIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDSFEEFLLKSPEDAKAILDKNANAQKARI 356

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  LD  SLPGKLADC  +D   +EL+LVEGDSAGGSAK GR+R+ QAI
Sbjct: 357 AAQRAREETRRKSALDTFSLPGKLADCESKDSTIAELYLVEGDSAGGSAKTGRNRKFQAI 416

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK+LNVER    +  ++ EI +++TA+GTGI +D  D+ KLRY KI+IMTDADVDG
Sbjct: 417 LPLRGKVLNVERVAEARAFANNEIKSIVTAIGTGIKEDL-DLTKLRYGKIVIMTDADVDG 475

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLTFF+R M  L+ NG ++I +PPLY I  GK + Y   +  L++   N+  + 
Sbjct: 476 AHIRTLLLTFFYRYMKDLVKNGNIFIAQPPLYKIEAGKKVAYAYSDAELDELKENEFSNS 535



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 3/132 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E      +++ + +  I    ++    +      +V      V    +    
Sbjct: 423 VLNVERVAEARAFANNEIKSIVTAIGTGIKEDLDLTKLRYGKIVIMTDADVDGAHIRTLL 482

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F +    K +  N         L  I  G K+      + LD +          ++QR
Sbjct: 483 LTFFYRY-MKDLVKNGNIFIAQPPLYKIEAGKKVAYAYSDAELDELKENEFSNSRYTIQR 541

Query: 739 YKGLGEMNASQL 750
           YKGLGEM+  QL
Sbjct: 542 YKGLGEMDPMQL 553


>gi|307295605|ref|ZP_07575441.1| DNA topoisomerase IV, B subunit [Sphingobium chlorophenolicum L-1]
 gi|306878644|gb|EFN09864.1| DNA topoisomerase IV, B subunit [Sphingobium chlorophenolicum L-1]
          Length = 658

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/584 (40%), Positives = 335/584 (57%), Gaps = 20/584 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +++   + YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EVLDN++DE++ G+A
Sbjct: 8   ANSSTAAQYDASAIEVLEGLEPVRRRPGMYIGGTD-ERALHHLASEVLDNSMDEAVAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             I V L      T++DNGRGIP D H +  G SA EVI+T LH+GGKF+ K+Y  SGGL
Sbjct: 67  TRIEVLLEPGNRLTITDNGRGIPVDPHPKFPGKSALEVILTTLHSGGKFSDKAYATSGGL 126

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS    + + R   ++  SF  G+  + L   G+A N  GT V+F+P ++
Sbjct: 127 HGVGISVVNALSINTVVEVARNKELFRQSFTQGLPSSGLEKVGAAPNRRGTSVSFIPDTE 186

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYL 236
           IF  Q F    L    R  ++L + V+I             P E    + GG+   +   
Sbjct: 187 IFGEQKFKPSRLYRLARSKAYLFAGVEIRWKCAPELIADDTPAEAVFQFPGGLADHLKEQ 246

Query: 237 DRHKKPLMQSPIRIQGS------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
              ++    +             R   ++   +  +  Y      + N IP  DGGTH +
Sbjct: 247 VGDRECATSAFFSGSQDFPDAAGRVEWAVAWPLWSDGSYS----WYCNTIPTPDGGTHEA 302

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+AL + I ++ E     K     +  DD       +LS+ + DP+F SQTK++L S 
Sbjct: 303 GLRAALVKGIRAFGELVGQKKAKD--ITADDIVTSSEIMLSVFIRDPQFQSQTKDRLTSP 360

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK-GVLDIAS 409
           E   +VE+ V D    +L +H    K ++  VLD    R   ++ +++ R+         
Sbjct: 361 EAARLVENAVRDHFDHYLSDHMERGKALLAYVLDRMDERLKRKQEKEVKRKTATNSRKLR 420

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS  DP+ +E+FLVEGDSAGGSAKQ R R+ QAILPLRGKILNV  A   K+L
Sbjct: 421 LPGKLTDCSNDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTAKIL 480

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++QEI  +I ALG G  +D  + + LRY +I+IMTDADVDGAHI TLL+TFFF++MP L+
Sbjct: 481 ANQEIADMILALGCGTRKDC-NPDNLRYERIVIMTDADVDGAHIATLLMTFFFQEMPELV 539

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
             G LY+ +PPLY +  G    Y KD+   E+ L  +   +++E
Sbjct: 540 RRGHLYLAQPPLYRLVAGGKSLYAKDDAHREEILSKEFKGKKVE 583



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 5/185 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    ++A+ +  +   + K  +      + +V      V    +    
Sbjct: 468 ILNVASANTAKILANQEIADMILALGCGTRKDCNPDNLRYERIVIMTDADVDGAHIATLL 527

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRY 739
             F F    + +    +      +  L+  G  +         + +    + K + + R+
Sbjct: 528 MTFFFQEMPELVRRGHLYLAQPPLYRLVAGGKSLYAKDDAHREEILSKEFKGKKVEVSRF 587

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVK----ITDASQADDLFSRLMGDEVEPRREFIQEN 795
           KGLGEMN  QL ETT++P TRSL+RV     I D  Q  +L  RLMG     R  FIQEN
Sbjct: 588 KGLGEMNPGQLRETTMDPKTRSLIRVTLPDDIEDRQQVRELVDRLMGTNPAHRFAFIQEN 647

Query: 796 SLPSA 800
           +    
Sbjct: 648 AATVD 652


>gi|66009669|gb|AAY42696.1| GyrB [Burkholderia ambifaria]
          Length = 635

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 278/639 (43%), Positives = 397/639 (62%), Gaps = 20/639 (3%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAG 166
           GLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P++VTG   
Sbjct: 1   GLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEQVDGVEVSPMLVTGDTE 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + 
Sbjct: 61  -NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFA 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGG
Sbjct: 118 GGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+K
Sbjct: 178 THLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TRRKGVLD
Sbjct: 238 LVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTRRKGVLD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+D
Sbjct: 298 GVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           K+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP
Sbjct: 358 KLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMP 417

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + 
Sbjct: 418 DMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAAAISGDA 477

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
           L       L    +I+     +D   +E  +     +  S++    + A  L   L+  A
Sbjct: 478 LGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHAALHDDA 536

Query: 647 EKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
            K++      +        + V+R   G     V++     +   +     ++  +    
Sbjct: 537 LKNDVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVTTADTFKGLIG 596

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
               +      + ++   S +  + +   + +S QRYKG
Sbjct: 597 EGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKG 635


>gi|297581950|ref|ZP_06943870.1| DNA gyrase subunit B [Vibrio cholerae RC385]
 gi|297533817|gb|EFH72658.1| DNA gyrase subunit B [Vibrio cholerae RC385]
          Length = 471

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/471 (46%), Positives = 302/471 (64%), Gaps = 8/471 (1%)

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TR
Sbjct: 1   SQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTR 60

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNV
Sbjct: 61  RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 120

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTF
Sbjct: 121 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTF 180

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP LI  G++YI +PPLY + +GK  QY+KDEE++  Y +  ++            
Sbjct: 181 FYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDSAELHVNADAP 240

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKL 638
            ++   L   +       KL++     +    + + +     N E  +D+    +   +L
Sbjct: 241 ALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIYVPRINAELCADKAAVEAWTQRL 300

Query: 639 ANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
             +LN     + +       +  +N     V+    GV  +++L    I S         
Sbjct: 301 VEQLNAKEVGASQYSVLVEHNAELNVYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADL 360

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
           S  ++        +        I+   + LD +    R+G+S+QRYKGLGEMN  QLWET
Sbjct: 361 SEALDGLIEAGAFIKRGERVQPISSFAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWET 420

Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           T++P+TR +++V I DA  AD+LF+ LMGD+VEPRR FI+ N+L    LD+
Sbjct: 421 TMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNALKVANLDV 471


>gi|28211416|ref|NP_782360.1| DNA topoisomerase IV subunit B [Clostridium tetani E88]
 gi|28203857|gb|AAO36297.1| DNA gyrase subunit B [Clostridium tetani E88]
          Length = 651

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/612 (36%), Positives = 344/612 (56%), Gaps = 22/612 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YD  ++  L+ L+ V+ RP MYIG T G  GLHH ++E+LDN+IDE   GY D  T+ L
Sbjct: 10  NYDVSTLTSLEKLEPVRVRPGMYIGST-GAKGLHHCVWEILDNSIDEISNGYGDTATIIL 68

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S T+ DNGRGIPT +H  +  S  E++ T LH G KFN   YK SGGLHGVG SVV
Sbjct: 69  NKDKSVTIMDNGRGIPTGIHPIKKKSGIEMVFTELHTGSKFNNSVYKTSGGLHGVGASVV 128

Query: 129 NALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDTGTEVTFLP 177
           NALS WL++ + + GNIY+  F             G+    + + G +   TGT+++FLP
Sbjct: 129 NALSKWLEVEVSQNGNIYKQRFEYAYDKKLKKNMPGMPIGQVEIVGKSK-STGTKISFLP 187

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             D+FS  DF ++ +  RL+EL+F N  + +  ID R  E  E     K G+  F+ YL+
Sbjct: 188 DDDVFSTTDFKFEIIDERLQELAFQNQGITLKFIDNRGEETVEKEYHSKRGLLDFIDYLN 247

Query: 238 RHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
             K  +   PI  +G R+   I    ++ +++ D   EN+  + NNIP  + GTH +G +
Sbjct: 248 ESKTIIHNPPILFEGEREIKGIRIHGEVCIQFTDSTTENIAGYVNNIPTTESGTHETGFK 307

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             +TR    + +K    K   +   GDD REG T+++ +K+ +P F  QTK KL ++E  
Sbjct: 308 MGMTRAFKEWAKKLNLIKDKDKDFEGDDLREGMTAIVKVKINNPIFEGQTKTKLGNNEAY 367

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           +++       L  W+E++   A +I+   L+ +  R+  ++  +  R+K     A L GK
Sbjct: 368 TLMNELTYTKLCEWIEDNKETATLIMNNALEVATRREKIKKINEAERKKVGKGTAPLAGK 427

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           +A C+ R+PK  E  +VEGDSAGGSAKQ R R+ Q I+P +GKI+N E+ + + ++ S+E
Sbjct: 428 VAVCTLRNPKLCEFIVVEGDSAGGSAKQARDRKFQTIMPSKGKIMNTEKQKIENVIGSEE 487

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +    TA+GTG+  +++    L+YHKIIIM+DADVDG HIRTL +T+ +R M  LI NG 
Sbjct: 488 LKIFNTAIGTGV-LENYREEDLKYHKIIIMSDADVDGFHIRTLWMTYIYRYMKQLITNGH 546

Query: 534 LYIIKPPLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY+  PPLY + +        +Y  +++ LE           ++ +     +        
Sbjct: 547 LYVAMPPLYRVYKNLKGKEISKYAYNDDDLEKIKKELGKGTNVQRYKGLGEMNPDQLWET 606

Query: 590 FIDDALKIDKLI 601
            ++   +I   I
Sbjct: 607 TLNPESRILHKI 618



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 56/85 (65%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
           +   +  K       L+ I     KG ++QRYKGLGEMN  QLWETTLNP++R L ++ I
Sbjct: 561 LKGKEISKYAYNDDDLEKIKKELGKGTNVQRYKGLGEMNPDQLWETTLNPESRILHKITI 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFI 792
            DA++A+ + S LMGD VEPR+++I
Sbjct: 621 DDAAKAEKMVSLLMGDVVEPRKKYI 645


>gi|94957784|gb|ABF47142.1| DNA gyrase subunit B [Mesoplasma chauliocola]
          Length = 553

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/533 (45%), Positives = 343/533 (64%), Gaps = 7/533 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T    GLHH+++E++DN++DE++ G+A+ I +T+  +G   V DNGRGIP  +  + G
Sbjct: 1   GSTSKA-GLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGIQTDSG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + +KREG I+   F  
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQLFSG 119

Query: 153 GIL-DNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISL 210
           G    + + + G    +TGT V F P  +IF    +F+Y+T+++++++LS+LN  + I L
Sbjct: 120 GGTQQSEIKIIGETS-ETGTTVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIEL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D R  +  E       GI  +V   +  K  +  S   +    ++I +++A+++N  Y 
Sbjct: 179 NDLRIDKHVEYHF--PNGILDYVKEKNETKAKINPSIFYVDDKHEDIEVEVALQYNAEYQ 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN++ F NNI   +GGTH  GLR +L R I  Y EK     K       DD +EG   ++
Sbjct: 237 ENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIV 296

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SI+  DP++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   R 
Sbjct: 297 SIRHTDPQYEGQTKTKLANPDAKRAVDAVVGDAFEEFLLKSPEDAKAILDKNANAQKARI 356

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  LD  SLPGKLADC  +DP+ +EL+LVEGDSAGGSAK GR+R  QAI
Sbjct: 357 AAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAI 416

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK+LNVER    +  ++ EI +++TA+GTGI +D  D++KLRY KI+IMTDADVDG
Sbjct: 417 LPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDI-DLSKLRYGKIVIMTDADVDG 475

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           AHIRTLLLTFF+R M  L+ +G +YI +PPLY I  GK + Y   +  LE+  
Sbjct: 476 AHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDAELEELK 528



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    S      +V      V    +    
Sbjct: 423 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLL 482

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    + +    +       L  I  G K+      + L+ +    F   R   ++
Sbjct: 483 LTFFYRYMKQLVVDGHVY-IAQPPLYKIEAGKKVAYAYSDAELEELKAGDFKDTR--FTI 539

Query: 737 QRYKGLGEMNASQL 750
           QRYKGLGEM+  QL
Sbjct: 540 QRYKGLGEMDPIQL 553


>gi|296117467|ref|ZP_06836054.1| DNA topoisomerase IV subunit B [Gluconacetobacter hansenii ATCC
           23769]
 gi|295975988|gb|EFG82779.1| DNA topoisomerase IV subunit B [Gluconacetobacter hansenii ATCC
           23769]
          Length = 676

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/586 (39%), Positives = 336/586 (57%), Gaps = 17/586 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  YDA +I++L+GL+ V++RP MYIG TD E+  HH+  E+LDNA+DE++ G+A +I V
Sbjct: 31  SEDYDASAIEVLEGLEPVRRRPGMYIGGTD-ETAYHHLASEILDNAMDEAVAGHASVIDV 89

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +L      T+ DNGRGIP D H +    SA EVI+T LHAGGKF+ K+Y  SGGLHGVG 
Sbjct: 90  SLEAGNWLTIRDNGRGIPVDPHPKFPQRSALEVILTTLHAGGKFSGKAYATSGGLHGVGS 149

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ +++ I R+  +++  +  GI   P+   G   N  GT++ F+P   IF   
Sbjct: 150 SVVNALSARMEVEIARDRTVWQQVYERGIPLAPIEEVGPTQNRRGTQIRFVPDPQIFGKL 209

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   L    R  +FL   V I         K +  P E  + + GG+   +     + 
Sbjct: 210 HFSPLRLYRLCRSKAFLFRGVTIRWSCDPALIKGTDVPAESVLHFPGGLADSLRDELGNT 269

Query: 241 KPLMQ------SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
             L                     ++ A+ + +     +  + N IP  +GGTH +G R+
Sbjct: 270 ALLTDIWAGDADLPTAVDGESTGRMEWAIAFVERGTTGLSSYCNTIPTPNGGTHETGFRT 329

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALT+ + ++ E+    +    +   DD     ++ LS+ + DP+F  QTKEKL S E   
Sbjct: 330 ALTKGLRNWGEQRSNKRAATINA--DDIMGLISAKLSVFIRDPQFQGQTKEKLTSGEASR 387

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE+ + D    WL  +P +A  ++  V++ +  R   +  +D T RK       LPGKL
Sbjct: 388 LVETALRDRFDHWLAGNPPQADNLLAVVIERAEERLRRKEMKD-TPRKSATRRLRLPGKL 446

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DC+  +  ++E+FLVEGDSAGGSAKQ R+RE QA+LPLRGKILNV  A  +K+ ++QE+
Sbjct: 447 TDCTRENAAETEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASAEKLRANQEL 506

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L+ ALG GIG+  FD ++LRY +IIIMTDADVDGAHI +LL+TFF+R++P+LI  G L
Sbjct: 507 RDLVEALGCGIGEH-FDASRLRYGRIIIMTDADVDGAHIASLLMTFFYRELPALIRGGHL 565

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           Y+ +PPLY +T+G    Y  ++   E  L  +            KG
Sbjct: 566 YLAQPPLYRLTQGGKTVYAMNDGDRERRLKREFKPNAKVEVSRFKG 611



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 5/188 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    +L + +  +     + +  S      ++      V    +    
Sbjct: 489 ILNVASASAEKLRANQELRDLVEALGCGIGEHFDASRLRYGRIIIMTDADVDGAHIASLL 548

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR--KGISMQR 738
             F +      I    +      +  L   G  +           +    +    + + R
Sbjct: 549 MTFFYRELPALIRGGHLYLAQPPLYRLTQGGKTVYAMNDGDRERRLKREFKPNAKVEVSR 608

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVK--ITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM  S L +TT++P  R+LL+V   I D++   +    LMG + E R +FIQE++
Sbjct: 609 FKGLGEMPPSDLKQTTMDPKHRTLLKVVTPIEDSNLTRERVEHLMGRKPELRFQFIQEHA 668

Query: 797 LPS-ALDI 803
                LDI
Sbjct: 669 RQVENLDI 676


>gi|115381152|gb|ABI96225.1| DNA gyrase subunit B [Entomoplasma lucivorax]
          Length = 553

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 239/535 (44%), Positives = 343/535 (64%), Gaps = 7/535 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T    GLHH+++E++DN++DE++ G+++ I +T+  +G   V DNGRGIP  +  + G
Sbjct: 1   GSTSKA-GLHHLVWEIMDNSVDEAMAGFSNKIILTITKEGEIIVQDNGRGIPVGIQADSG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI- 151
            SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + +KREG I+   F  
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQVFSG 119

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISL 210
            G     + + G    +TGT V F P  +IF    +F+Y+T+++++++LS+LN  + I L
Sbjct: 120 GGTKQTEIKIIGDTA-ETGTTVKFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIEL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D R  +  E       GI  +V   +  K  +  S   +    ++I +++A+++N  Y 
Sbjct: 179 NDLRIDKHVEYHF--PNGILDYVKEKNETKVKINPSIFYVDDKHEDIEVEVALQYNAEYQ 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN++ F NNI   +GGTH  GLR +L R I  Y EK     K       DD +EG   ++
Sbjct: 237 ENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIV 296

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SI+  DP++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   R 
Sbjct: 297 SIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEKFLLKSPEDAKAILDKNANAQKARI 356

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  LD  SLPGKLADC  +DP+ +EL+LVEGDSAGGSAK GR+R  QAI
Sbjct: 357 AAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAI 416

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK+LNVER    +  ++ EI +++TA+GTGI +D  D++KLRY KI+IMTDADVDG
Sbjct: 417 LPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDI-DLSKLRYGKIVIMTDADVDG 475

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           AHIRTLLLTFF+R M  L+ +G +YI +PPLY I  GK + Y   +  LE   ++
Sbjct: 476 AHIRTLLLTFFYRYMKRLVVDGHVYIAQPPLYKIEAGKKVAYAYSDAELEQLKLS 530



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    S      +V      V    +    
Sbjct: 423 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLL 482

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    + +    +       L  I  G K+      + L+ +    F   R   ++
Sbjct: 483 LTFFYRYMKRLVVDGHVY-IAQPPLYKIEAGKKVAYAYSDAELEQLKLSDFKYSR--YTI 539

Query: 737 QRYKGLGEMNASQL 750
           QRYKGLGEM+  QL
Sbjct: 540 QRYKGLGEMDPIQL 553


>gi|98991106|gb|ABF60571.1| DNA gyrase subunit B [Spiroplasma melliferum KC3]
          Length = 558

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/529 (47%), Positives = 357/529 (67%), Gaps = 7/529 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T+   GLHH+++E++DN+IDE L  +A+ I + LN D S TV DNGRGIP ++H +  
Sbjct: 1   GATNA-RGLHHLVWEIVDNSIDEVLANFANKIKIILNKDESITVIDNGRGIPIEIHPKTK 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           +S  E + T LHAGGKF+  +YK+SGGLHGVG SVVNALS +LK+ +++    Y M F N
Sbjct: 60  VSTLETVFTILHAGGKFDSNTYKISGGLHGVGASVVNALSKYLKVEVRKNNKKYVMEFHN 119

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISL 210
            G +  P+   GS   +TGT VTFLP   IF     F++ T+Q+R+++L+FLN  ++ISL
Sbjct: 120 GGQILTPIKEVGSTS-ETGTTVTFLPDEKIFKETTIFSFSTIQNRIKQLAFLNKGLEISL 178

Query: 211 ID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           +D +   E + +   +  GI+ +V  L++     +     ++G  DNI ++  +++ND Y
Sbjct: 179 VDLREEDEEKTVLYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNIVVEFGLQYNDNY 238

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQI-TSYVEKSFGSKKDKRSVIGDDCREGFTS 328
            EN+  F NNI   +GGTH  G R A+ R+I   +   +  +K ++     DD +EG T 
Sbjct: 239 SENIFSFCNNINTHEGGTHEEGARLAIVREINNYFKNINKNNKGNEDKFTWDDIKEGMTI 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SI+ PDP++  QTK KL +SEV+ +V + V  GLS++L E+P +AK I++K+  +   
Sbjct: 299 IISIRHPDPQYEGQTKTKLGNSEVKKIVSNIVGKGLSSYLLENPEDAKKIIEKISLSLKA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AA+RA++ TRRK V+D  SLPGKLADC  +D K +EL++VEGDSAGGSAK GR+R+ Q
Sbjct: 359 RIAAQRAKETTRRKTVMDSFSLPGKLADCETKDAKIAELYIVEGDSAGGSAKSGRNRKFQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKILNVE+A+  K+  + EI ++ITALG GI +D+F+  KLRY K+IIMTDADV
Sbjct: 419 AILPLRGKILNVEKAKQIKIFENNEINSIITALGAGI-KDNFNDKKLRYQKVIIMTDADV 477

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           DGAHIR LLLTFF+R M  LI NG +YI +PPLY I  G  ++Y   + 
Sbjct: 478 DGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLYKIQNGNQIRYAYSDN 526



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/19 (68%), Positives = 15/19 (78%)

Query: 732 KGISMQRYKGLGEMNASQL 750
           K  ++QRYKGLGEMN  QL
Sbjct: 540 KNYTIQRYKGLGEMNPEQL 558


>gi|19909543|dbj|BAB86967.1| DNA gyrase subunit B [Caulobacter sp. ATCC 15256]
          Length = 474

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 314/474 (66%), Positives = 378/474 (79%), Gaps = 6/474 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  SGLHHM+YEV+DNAIDE+L G+AD++ V LN DGS TV+DNGRGIP D+H EEG+S
Sbjct: 1   TDDGSGLHHMVYEVVDNAIDEALAGHADLVEVILNADGSVTVTDNGRGIPVDIHAEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WLKL I R G  +EM F  G 
Sbjct: 61  AAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLVIFRNGQRHEMKFERGD 120

Query: 155 LDNPLVVTGSAGND------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
               L VTG A         +GT+VTF PS   F+  DF+  TL+HRLREL+FLNS V I
Sbjct: 121 TVESLKVTGEAPMRENGKVLSGTQVTFYPSITTFAHIDFDLKTLEHRLRELAFLNSGVVI 180

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            L D R PEP EI + Y+GG+EAFV +LD+ K P+++  I I+G +DNI IDLA+ WND 
Sbjct: 181 KLADHRHPEPVEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGKKDNIEIDLALWWNDS 240

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           YHE +LCFTNNIPQ+DGGTHLS  R++LT+ + +Y+E S   KK+K +  G+D REG T 
Sbjct: 241 YHETMLCFTNNIPQRDGGTHLSAFRTSLTKVMGAYMESSGALKKEKVAPTGEDAREGLTC 300

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VLS+K+PDP+FSSQTK+KLVSSEVR  VE   ++GLS W EEHP+EAK++V K+++A+  
Sbjct: 301 VLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLCSEGLSQWFEEHPVEAKMVVAKIIEAASA 360

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R+AAR+ARDLTRRK  LDI+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQ
Sbjct: 361 REAARKARDLTRRKSALDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQ 420

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           A+LPLRGKILNVERARFD+MLSS+ IGTLI ALGTGIG+D FD +KLRYHKII+
Sbjct: 421 AVLPLRGKILNVERARFDRMLSSELIGTLILALGTGIGRDDFDADKLRYHKIIL 474


>gi|262195363|ref|YP_003266572.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
 gi|262078710|gb|ACY14679.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
          Length = 647

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/572 (40%), Positives = 342/572 (59%), Gaps = 15/572 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY A  I +L+GL+ V+KRP+MYIG TD   G HH+++E++DN+IDE +  +A  +
Sbjct: 1   MAQSSYTAQDITVLEGLEPVRKRPAMYIGGTDKV-GFHHLLWEIVDNSIDEVINKHATRV 59

Query: 65  TVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHG 122
            VTL+ DG+  T+ DNGRGIP D   +    A E+IMT LHAGGKF   K+YK SGGLHG
Sbjct: 60  DVTLHDDGTRVTIEDNGRGIPIDTLPKYKKPALEIIMTTLHAGGKFERGKNYKHSGGLHG 119

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALSS L   +KR+G++Y+ ++  G+    +   G +   +GT +TF P   IF
Sbjct: 120 VGASVVNALSSELIAEVKRDGDLYQQTYERGVPTGKMKKAG-SSRGSGTIITFTPDPQIF 178

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
              Q F+   +  RL   S+L+  V++ L DK S      T  +  GI  ++S L   ++
Sbjct: 179 GKKQRFDAKHIAERLEAKSYLHRGVKLVLHDKLSKPNATHTYQHDQGIAEYLSKLLGDRQ 238

Query: 242 PLM----QSPIRIQ---GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
                     +  +       +I +++A+ W +   E +  + N IP   GGTH  GL+S
Sbjct: 239 YPTVPTKMDGLYFERAGEEDGDIDLEVALVWTEAPDEYIRSYVNGIPTPAGGTHEQGLKS 298

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ + + +Y+           ++  +D REG   +LS  + DP+F  QTK++L ++EV +
Sbjct: 299 AVVKGMRNYMNTHK-LVPKGITLTAEDIREGLVVILSCYVGDPQFQGQTKQRLNNTEVSA 357

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG-VLDIASLPGK 413
            V+  +   +  +  ++   A+ +V +++ A+  R A+R A     RK  V    +LPGK
Sbjct: 358 QVDGALRPAIERYFNQNQNIAEAVVARMILAARARIASRAASQAVSRKTAVSHRLNLPGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS  +P  SELF+VEGDSAGGSAKQGR R  QAILPLRGK+LN E+A   K+L+++E
Sbjct: 418 LADCSSTNPGDSELFIVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTQKLLANKE 477

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +  +++ALG G+G    D+++LRY KI ++ DAD DG HI TLLLTFF+R M  LI +G 
Sbjct: 478 LSDIVSALGCGMGPKL-DLSRLRYGKIFLLMDADADGHHIATLLLTFFYRHMRQLIDHGH 536

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           +Y+ +PPLY I  GK   +  D+   +  L N
Sbjct: 537 VYLAQPPLYRIDLGKETFWALDDIHKDQILAN 568



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL-DTIFSIGRKGI--S 735
            + + +F  ++ R   +              +  K        +  D I +  R     +
Sbjct: 517 ATLLLTFFYRHMRQLIDHGHVYLAQPPLYRIDLGKETFWALDDIHKDQILANARSNAKPN 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGDEVEPRREFIQ 793
           + R+KGLGEMN S L +TTL+P  RS LR+ +   +A   D   ++LMG +   R + I 
Sbjct: 577 ITRFKGLGEMNPSVLKKTTLDPRYRSALRITVPEGEALGTDQTIAQLMGKDASARYDIIT 636

Query: 794 ENSLPS-ALDI 803
           +       LD+
Sbjct: 637 DGIHEVDELDV 647


>gi|83858465|ref|ZP_00951987.1| DNA topoisomerase IV subunit B [Oceanicaulis alexandrii HTCC2633]
 gi|83853288|gb|EAP91140.1| DNA topoisomerase IV subunit B [Oceanicaulis alexandrii HTCC2633]
          Length = 712

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/580 (40%), Positives = 340/580 (58%), Gaps = 17/580 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +N  YDA SI++L+GL+ V+KRP MYIG TD E  LHH+  E+LDN++DE++ G+AD I 
Sbjct: 67  ENKGYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLFAEILDNSMDEAVAGHADRIE 125

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           VT++ DG  +VSDNGRGIP D H +    SA EV++T LHAGGKF+ K+Y+ +GGLHGVG
Sbjct: 126 VTMDEDGFVSVSDNGRGIPVDPHPKFPDKSALEVVLTTLHAGGKFSDKAYQTAGGLHGVG 185

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183
           VSVVNALS  +++ + R+  ++   ++ GI   P+   G A N  GT V F P  +IF  
Sbjct: 186 VSVVNALSELVEVEVARDKTLWRQVYVRGIPQGPVEKVGGAPNRRGTTVRFKPDPEIFGP 245

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEAFVSYLDR 238
                   + +  R  +FL   VQI         + +  P E T+ + GG+   +  L  
Sbjct: 246 RAILKAPRIFNMARAKAFLRRGVQIRWKCPESLVEGTDIPAETTLAFPGGLADRLVELTP 305

Query: 239 HKKPLMQSP-IRIQGSRDNISIDLAMRWNDG----YHENVLCFTNNIPQKDGGTHLSGLR 293
               +      R++      +++ A+ +++            F N +P   GGTH  GLR
Sbjct: 306 GAALVTDQFAGRVERDGRMGAVEWAVAFSENGFGPDDSFCQSFCNTVPTPMGGTHEQGLR 365

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SAL++ + +Y E +   K  +  +  DD   G   ++S+ + DP F  QTK++L ++E  
Sbjct: 366 SALSKGLRAYGELANVKKAAQ--ITADDVMGGAGVLISVFIKDPEFQGQTKDRLSTAEAG 423

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VE  + D    WL   P +A  +V+  +D +  R   +R ++  +R+       LPGK
Sbjct: 424 RLVEQAIRDQFDHWLAGRPKDAARLVEWAVDRAEDRLKRKREKE-VKRQSATRKLRLPGK 482

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS+   + +ELFLVEGDSAGGSAKQ R R+ QAILPLRGKILNV  A  DK+ ++QE
Sbjct: 483 LADCSQNSAEGAELFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASATADKIAANQE 542

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  L+ ALG   G+  FD+  LRY ++IIM DADVDGAHI  LL TFF++ +P LI +G 
Sbjct: 543 ISDLLLALGVQPGKK-FDLEDLRYERVIIMCDADVDGAHIAALLATFFYKFLPGLIESGR 601

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           L++ +PPLY +T+G    Y +D+   +  L       ++E
Sbjct: 602 LFMAQPPLYRLTQGGKTLYAQDDVEKDRLLETAFKKGKVE 641



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     ++   ++++ L  +  +  K +       + ++      V    +    
Sbjct: 526 ILNVASATADKIAANQEISDLLLALGVQPGKKFDLEDLRYERVIIMCDADVDGAHIAALL 585

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG-RKG-ISMQR 738
           + F +      I S R+      +  L   G  +         D +     +KG + + R
Sbjct: 586 ATFFYKFLPGLIESGRLFMAQPPLYRLTQGGKTLYAQDDVE-KDRLLETAFKKGKVEVGR 644

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLR--VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM   QL  TT+ P++RSL R  V       AD L   LMG + E R +FIQ+N+
Sbjct: 645 FKGLGEMTPPQLKSTTMLPESRSLARVVVTPEMRESADALVETLMGKKPELRFQFIQDNA 704

Query: 797 LPSA-LDI 803
                +D+
Sbjct: 705 PFVEDVDV 712


>gi|327188314|gb|EGE55532.1| DNA gyrase protein, B subunit [Rhizobium etli CNPAF512]
          Length = 743

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/598 (38%), Positives = 341/598 (57%), Gaps = 18/598 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            +  Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DNA+DE++ G+A+ I 
Sbjct: 100 NSDEYGASSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNAMDEAVAGHANFIE 158

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L++ G  TV+DNGRGIP + H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 159 VHLDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVG 218

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS +L++ + R   +Y   F  G+    L   G   N  GT V F P + IF  
Sbjct: 219 VSVVNALSDFLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDAQIFGE 278

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLD 237
              F+   +    R  ++L   V+I          + S  P +    + GG++ ++    
Sbjct: 279 HMKFDAARVFRMARSKAYLFGGVEIRWSCDAGVLPEGSEVPDKAVFHFPGGLKDYLQATM 338

Query: 238 RHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             +  + +     +  +   + S++ A+ W  G    V  + N IP  +GGTH +GLR A
Sbjct: 339 GKEFTVTREIFAGKTEKASGHGSMEWAITWYGG-DPQVHSYCNTIPTPEGGTHEAGLRIA 397

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT+ + +Y E +   +  +  +  DD       +LS+ + +P F  QTK+KL + E + +
Sbjct: 398 LTKGLKAYAELTQNKRAAQ--ITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRI 455

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ + D    +L ++P EA  ++  V++        RR      RK  +    LPGKLA
Sbjct: 456 VENALRDPFDHYLADNPNEAAKLLDWVIER-AEERLRRRKEKEVNRKTAVRKLRLPGKLA 514

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS+   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q++ 
Sbjct: 515 DCSQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLA 574

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G  +  +    LRY +II+MTDADVDGAHI +LL+TFF+++MP L+  G L+
Sbjct: 575 DLIQALGCGT-RSKYRDEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLF 633

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +  PPLY IT+G    Y +D+    + +  +   +        KG+     +   + +
Sbjct: 634 LAVPPLYKITQGSKSAYARDDNHRAELMQTEFRGKAKVEISRFKGL--GEMMPAQLKE 689



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 72/189 (38%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    +LA+ +  +   +   +       + ++      V    +    
Sbjct: 556 ILNVASAGREKLGANQQLADLIQALGCGTRSKYRDEDLRYERIIVMTDADVDGAHIASLL 615

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP---CSLLDTIFSIGRKGISMQ 737
             F +    + +    +      +  +                 L+ T F  G+  + + 
Sbjct: 616 ITFFYQEMPELVRGGHLFLAVPPLYKITQGSKSAYARDDNHRAELMQTEFR-GKAKVEIS 674

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LL+V I   D          LMG + E R  FIQE 
Sbjct: 675 RFKGLGEMMPAQLKETTMDPSKRTLLKVLIDEVDFEGTRSAVDDLMGTKPEARFRFIQER 734

Query: 796 SLPS-ALDI 803
           +  +  LDI
Sbjct: 735 AAFAENLDI 743


>gi|47459221|ref|YP_016083.1| topoisomerase IB subunit B [Mycoplasma mobile 163K]
 gi|47458550|gb|AAT27872.1| topoisomerase IB subunit B [Mycoplasma mobile 163K]
          Length = 638

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/591 (39%), Positives = 356/591 (60%), Gaps = 9/591 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N +YD+ SI+  K L+AVKKRP MYIG TD   GLHH+++E++DN+IDE++  +A+ I V
Sbjct: 2   NINYDSKSIKSYKDLEAVKKRPGMYIGSTDA-KGLHHLVWEIVDNSIDEAIANFANKIQV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGS  V DNGRGIP D   ++  +  E + T LH GGKF   +YK SGGLHGVG S
Sbjct: 61  TLTKDGSVIVEDNGRGIPVDKFSDQK-TTVEAVFTELHTGGKFGDGAYKTSGGLHGVGSS 119

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   + R+  IYE  F NG   +       +    GT++ F P   IF    
Sbjct: 120 VVNALSIKLIATVYRDKKIYETIFENGGEISQSTKIIGSTTKRGTKIEFWPDYIIFKRAK 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            +Y+ +  RLRE SFL  +++I L+D+ +   ++ T  Y+ GI  FV +++  K  +   
Sbjct: 180 LSYEIISERLRESSFLIQNLEIVLVDENT--NQKETFKYENGIVEFVDFINSGKDAINSK 237

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I I  ++ +I++++A+++ D Y+E ++ F NNI  +DGG+H +G+++ALT+    YV+ 
Sbjct: 238 TIYINDTKKDINVEIAIQYTDSYNETIVSFVNNIKTRDGGSHENGVKTALTKVFNEYVKD 297

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364
               K    S  G+D REG T V+S+++P+    F  QTK+KL + E +S+ E  +++ L
Sbjct: 298 KNLLKGKNNSFEGNDIREGITIVISLRIPENILEFVGQTKDKLGTQEAKSITEDILSNSL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERDP 422
             WL E+  +A  I+ K+  +   R AA+ AR  +R  +  + +   L GKL+    +  
Sbjct: 358 WIWLNENKEDALKIINKIKKSQDSRIAAKNARKESRETKNSLKEQKILSGKLSPARSKKA 417

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            + ELFLVEGDSAGGSAK GR+ + QAILPL+GK++N E+ +   +L ++EI T+I  +G
Sbjct: 418 SEKELFLVEGDSAGGSAKLGRNSQFQAILPLKGKVINCEKTKLIDVLKNEEISTIINTIG 477

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG D FD+ K  YHK++IMTDADVDG+HI+ LLLTF +R M  LI  G +YI  PPL+
Sbjct: 478 AGIGAD-FDLKKANYHKVVIMTDADVDGSHIQVLLLTFLYRYMKPLIEAGMVYIALPPLF 536

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
            IT  K+ ++    +  E   + +  ++         G ++ + L     +
Sbjct: 537 KITNKKTKKFKYVLDEDELNNLMKKENDFEIQRYKGLGEMNPDQLWETAMN 587



 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 6/256 (2%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I + +  +        E      SL E+  L        SK      +           
Sbjct: 374 KIKKSQDSRIAAKNARKESRETKNSLKEQKILSGKLSPARSKKASEKELFLVEGDSAGGS 433

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                + +      +   V NCE  + I+V    +++  +N I       +     N   
Sbjct: 434 AKLGRNSQFQAILPLKGKVINCEKTKLIDVLKNEEISTIINTIGAGIGADFDLKKANYHK 493

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGP-- 719
           +V      V    +     + +F  +Y + +    +    L  L  I N    K      
Sbjct: 494 VVIMTDADVDGSHI--QVLLLTFLYRYMKPLIEAGMVYIALPPLFKITNKKTKKFKYVLD 551

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
              L+ +         +QRYKGLGEMN  QLWET +NP+TR+L++V+I DA   +   S 
Sbjct: 552 EDELNNLMKK-ENDFEIQRYKGLGEMNPDQLWETAMNPETRTLIKVEIEDALITERRVST 610

Query: 780 LMGDEVEPRREFIQEN 795
           LMGD++E R+E+I +N
Sbjct: 611 LMGDQIELRKEWINKN 626


>gi|94957780|gb|ABF47140.1| DNA gyrase subunit B [Entomoplasma melaleucae]
          Length = 553

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/540 (44%), Positives = 343/540 (63%), Gaps = 7/540 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T    GLHH+++E++DN++DE++ G+A+ I +T+  +G   V DNGRGIP  +  + G
Sbjct: 1   GSTSKA-GLHHLVWEIMDNSVDEAMAGFANKIILTITQEGEIIVQDNGRGIPVGIQADSG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI- 151
            SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + +KREG I+   F  
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQVFSG 119

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISL 210
            G     + + G    +TGT V F P   IF    +F+Y+T+++++++LS+LN  + I L
Sbjct: 120 GGTKQTEIEIIGETT-ETGTIVKFKPDPKIFLEGTEFDYETIRNKVKQLSYLNKGLVIEL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D R  +  E       GI  +V   +  K  +  S   +    D+I +++A+++N  Y 
Sbjct: 179 NDLRIDKHVEYHF--PNGILDYVKEKNETKVKINPSIFYVDDKHDDIEVEVALQYNAEYQ 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN++ F NNI   +GGTH  GLR +L R I  Y EK     K       DD +EG   ++
Sbjct: 237 ENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCII 296

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SI+  DP++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   R 
Sbjct: 297 SIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKTILDKNANAQKARI 356

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  LD  SLPGKLADC  +DP+ +EL+LVEGDSAGGSAK GR+R  QAI
Sbjct: 357 AAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAI 416

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK+LNVER    +  ++ EI +++TA+GTGI +D  D++KLRY KI+IMTDADVDG
Sbjct: 417 LPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDI-DLSKLRYGKIVIMTDADVDG 475

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLTFF+R M  L+ NG +YI +PPLY I  GK + Y   +  LE+   ++    
Sbjct: 476 AHIRTLLLTFFYRYMKQLVVNGHVYIAQPPLYKIEAGKKVAYAYSDSELEELKADEFRDS 535



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 3/132 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    S      +V      V    +    
Sbjct: 423 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLL 482

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738
             F +    + + +  +       L  I  G K+      S L+ + +   +    ++QR
Sbjct: 483 LTFFYRYMKQLVVNGHVY-IAQPPLYKIEAGKKVAYAYSDSELEELKADEFRDSRYTIQR 541

Query: 739 YKGLGEMNASQL 750
           YKGLGEM+  QL
Sbjct: 542 YKGLGEMDPIQL 553


>gi|83594042|ref|YP_427794.1| DNA topoisomerase IV subunit B [Rhodospirillum rubrum ATCC 11170]
 gi|83576956|gb|ABC23507.1| Gram negative topoisomerase IV, subunit B [Rhodospirillum rubrum
           ATCC 11170]
          Length = 665

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 237/581 (40%), Positives = 334/581 (57%), Gaps = 14/581 (2%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y A SI++L+GL+ V++RP MYIG TD E  LHH++ E+LDNA+DE++ GYA +I + L 
Sbjct: 17  YTARSIEVLEGLEPVRRRPGMYIGGTD-ERALHHLVAEILDNAMDEAVAGYAQVIDIDLA 75

Query: 70  MDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           +DGS  V DNGRGIP D H      SA EVI+T LH+GGKF   +YKVSGGLHGVG+SVV
Sbjct: 76  VDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGISVV 135

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDF 187
           NALS  L++ + R+  ++   F  G    PL   G A N  GT+V F P ++IF     F
Sbjct: 136 NALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRRGTQVRFHPDAEIFGPRARF 195

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRHKK 241
               L    R  ++L   V+I               P E    +  G+  ++ +   ++ 
Sbjct: 196 KPALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALANRP 255

Query: 242 PLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            +         +   D  +++ A+ W +        + N IP  +GGTH +GLR+ALTR 
Sbjct: 256 LVGGRTFAGTANLPDDMGTVEWALCWPEDDEPFFNSYVNTIPTPEGGTHEAGLRNALTRG 315

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+ E S   K    ++  +D   G   + S+ + DP+F  QTKEKL S E   +VE  
Sbjct: 316 LRSFAEMSGNKKGA-AALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLVEQA 374

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + D    WL   P  A +++   L+ +  R   R+A++ T RK       LPGKL+DC+ 
Sbjct: 375 LRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKE-TSRKTATKKLRLPGKLSDCTR 433

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
              + +ELFLVEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  DK+  +QE+  L  
Sbjct: 434 STRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDLAE 493

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG G  + +FD+  LRY K++IMTDADVDGAHI +LL+TFFFR+MP+L+  G LY+  P
Sbjct: 494 ALGCGT-RGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLAMP 552

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           PLY +T+G +  Y +D+   +  +     ++        KG
Sbjct: 553 PLYRLTQGGTSVYARDDAHKDQLMKTVFKTKGKVEISRFKG 593



 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 13/94 (13%)

Query: 721 SLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI---------TDA 770
            L+ T+F    KG + + R+KGLGEM  +QL ETT+   TR LLRV +          DA
Sbjct: 574 QLMKTVFKT--KGKVEISRFKGLGEMPPAQLRETTMAYATRQLLRVTVPGGKTEEDREDA 631

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +   L   LMG + E R  FIQEN+  +  LDI
Sbjct: 632 RETAKLVEELMGRKPELRFRFIQENARFAENLDI 665


>gi|85708623|ref|ZP_01039689.1| topoisomerase B subunit [Erythrobacter sp. NAP1]
 gi|85690157|gb|EAQ30160.1| topoisomerase B subunit [Erythrobacter sp. NAP1]
          Length = 662

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/590 (38%), Positives = 337/590 (57%), Gaps = 22/590 (3%)

Query: 1   MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MSD+        +  YD+ SI++L+GL+ V++RP MYIG TD    LHH+  EVLDN++D
Sbjct: 1   MSDDLFENTPTTSGDYDSSSIEVLEGLEPVRRRPGMYIGGTDD-RALHHLAAEVLDNSMD 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKS 113
           E++ G+A  I V L      ++SDNGRGIP D H +  G S  EVI+T LH+GGKF+ K+
Sbjct: 60  EAVAGHASRIEVRLEEGNRLSISDNGRGIPVDEHPKYPGKSTLEVILTTLHSGGKFSGKA 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y  SGGLHGVGVSVVNALSS  ++ + R+  +Y   F  G    P+ V G+A N  GT V
Sbjct: 120 YATSGGLHGVGVSVVNALSSHTRVEVARDKQLYAQEFAKGHTQGPIEVVGAAPNRRGTTV 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGI 229
           TF P ++IF  + F    L    R  ++L + V+I      S    ++       + GG+
Sbjct: 180 TFTPDTEIFGDRQFKPHRLFKLARSKAYLFAGVEIRWKCAESLTSDDVPAEATFKFPGGL 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRD------NISIDLAMRWNDGYHENVLCFTNNIPQK 283
              ++     ++ +   P   +            S++ A+ W      +   + N +P  
Sbjct: 240 ADHLAEQVGQRECVTAQPFTGKQEFPEKDGIGQGSVEWAIAWPLYSDGSTSWYCNTVPTP 299

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTH  G+R ALT+ + ++ E +   K     +  DD   G   +LS+ + DP+F SQT
Sbjct: 300 DGGTHEQGVRGALTKGLRAFGELTGTKKAKD--ITADDVMTGAEVMLSVFIRDPQFQSQT 357

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K++L S E   +VE+ V D    +L ++    K ++ +V++    R   ++ R++ R+  
Sbjct: 358 KDRLTSPEAARLVEAAVRDHFDHFLTDNMDRGKALLGEVMERMDERLKRKQEREIKRKTA 417

Query: 404 VL-DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                  LPGKL DCS    +++ELF+VEGDSAGGSAKQ R R+ QAILP+RGKILNV  
Sbjct: 418 TNAKKLRLPGKLTDCSGEGERETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVAS 477

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A  DK+ ++ EI  L  A+G G  +D  D   LRY +IIIMTDADVDGAHI TLL+TFFF
Sbjct: 478 ATADKIRANSEIADLTLAMGCGTRKDC-DPESLRYDRIIIMTDADVDGAHIATLLMTFFF 536

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           ++MP ++  G L++ +PPLY +T GK  +Y +D+    +        +++
Sbjct: 537 QEMPEVVRKGHLFLAQPPLYRLTAGKESRYARDDAHRAELEETVFKGKKV 586



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 6/80 (7%)

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADDL 776
            L +T+F  G+K + + R+KGLGEMN  QL ETT++P+TRSL+R+ +     D +    L
Sbjct: 575 ELEETVFK-GKK-VDVARFKGLGEMNPQQLRETTMHPETRSLVRITLPQEFEDRAGVKVL 632

Query: 777 FSRLMGDEVEPRREFIQENS 796
             +LMG   E R  FIQ  +
Sbjct: 633 VDQLMGKNPEHRFNFIQNRA 652


>gi|167077357|gb|ABZ10900.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 640

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 283/642 (44%), Positives = 400/642 (62%), Gaps = 20/642 (3%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTG 163
           V  GLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P++VTG
Sbjct: 3   VRVGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTG 62

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
               + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +      
Sbjct: 63  DTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDF 119

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            + GG++ FV ++++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+
Sbjct: 120 AFAGGVKGFVEFINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQR 179

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQT
Sbjct: 180 DGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQT 239

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKG
Sbjct: 240 KDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKG 299

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+A
Sbjct: 300 VLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 359

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R+DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGAHIRTLLLTF +R
Sbjct: 360 RYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFLYR 419

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           QMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS
Sbjct: 420 QMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAIS 479

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            + L       L    +I+     +D   +E AV+ GV    S++E   + A  L   L+
Sbjct: 480 GDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALH 538

Query: 644 FIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
             A K+E      +        + V+R   G     V++     +   +     +N  + 
Sbjct: 539 DEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKG 598

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                  +      + +    S +  + +   + +S QRYKG
Sbjct: 599 LIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 640


>gi|209549430|ref|YP_002281347.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535186|gb|ACI55121.1| DNA topoisomerase IV, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 704

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 18/601 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DNA+DE++ G+A+
Sbjct: 58  TTSNADEYGASSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNAMDEAVAGHAN 116

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            I V L+++G  TVSDNGRGIP + H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLH
Sbjct: 117 FIEVYLDLEGYLTVSDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLH 176

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ + R   +Y   F  G+    L   G   N  GT V F P   I
Sbjct: 177 GVGVSVVNALSDDLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQI 236

Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVS 234
           F     F+   +    R  ++L   V+I    ++      S  P +    + GG++ ++ 
Sbjct: 237 FGDHMKFDAARVFRMARSKAYLFGGVEIRWSCEQGVLPEGSEVPDKAVFHFPGGLKDYLQ 296

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
                +  + +     +  +   + S++ A+ W  G    V  + N IP  +GGTH +GL
Sbjct: 297 ATMGKEFTVTREIFAGKTEKTSGHGSMEWAITWYGG-DPQVHSYCNTIPTPEGGTHEAGL 355

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALT+ + +Y E +   +  +  +  DD       +LS+ + +P F  QTK+KL + E 
Sbjct: 356 RIALTKGLKAYAELTQNKRAAQ--ITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEA 413

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE+ + D    +L ++P E+  ++  V++        RR      RK  +    LPG
Sbjct: 414 QRIVENALRDPFDHYLADNPNESAKLLDWVIER-AEERLRRRKEKEVNRKTAVRKLRLPG 472

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q
Sbjct: 473 KLADCSQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQ 532

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           ++  LI ALG G  +  +    LRY +II+MTDADVDGAHI +LL+TFF+++MP L+  G
Sbjct: 533 QLADLIQALGCGT-RSKYRDEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGG 591

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            L++  PPLY IT+G    Y +D+    + +  +   +        KG+     +   + 
Sbjct: 592 HLFLAVPPLYKITQGSKSAYARDDNHRAELMQTEFKGKAKVEISRFKGL--GEMMPAQLK 649

Query: 593 D 593
           +
Sbjct: 650 E 650



 Score =  113 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 72/189 (38%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    +LA+ +  +   +   +       + ++      V    +    
Sbjct: 517 ILNVASAGREKLGANQQLADLIQALGCGTRSKYRDEDLRYERIIVMTDADVDGAHIASLL 576

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP---CSLLDTIFSIGRKGISMQ 737
             F +    + +    +      +  +                 L+ T F  G+  + + 
Sbjct: 577 ITFFYQEMPELVRGGHLFLAVPPLYKITQGSKSAYARDDNHRAELMQTEFK-GKAKVEIS 635

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LL+V I   D          LMG + E R  FIQE 
Sbjct: 636 RFKGLGEMMPAQLKETTMDPSKRTLLKVLIDEVDFEGTRSAVDDLMGTKPEARFRFIQER 695

Query: 796 SLPS-ALDI 803
           +  +  LDI
Sbjct: 696 AAFAENLDI 704


>gi|19909545|dbj|BAB86968.1| DNA gyrase subunit B [Caulobacter sp. ATCC 15259]
          Length = 474

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 314/474 (66%), Positives = 378/474 (79%), Gaps = 6/474 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  SGLHHM+YEV+DNAIDE+L G+AD++ V LN DGS TV+DNGRGIP D+H EEG+S
Sbjct: 1   TDDGSGLHHMVYEVVDNAIDEALAGHADLVEVILNADGSVTVTDNGRGIPVDIHAEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WLKL I R G  +EM F  G 
Sbjct: 61  AAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLVIFRNGQRHEMKFERGD 120

Query: 155 LDNPLVVTGSAGND------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
               L VTG A         +GT+VTF PS   F+  DF+  TL+HRLREL+FLNS V I
Sbjct: 121 TVESLKVTGEAPVRENGKVVSGTQVTFYPSITTFAHIDFDLKTLEHRLRELAFLNSGVVI 180

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            L D R PEP EI + Y+GG+EAFV +LD+ K P+++  I I+G +DNI IDLA+ WND 
Sbjct: 181 KLADNRHPEPVEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGKKDNIEIDLALWWNDS 240

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           YHE +LCFTNNIPQ+DGGTHLS  R++LT+ + +Y+E S   KK+K +  G+D REG T 
Sbjct: 241 YHETMLCFTNNIPQRDGGTHLSAFRTSLTKVMGAYMESSGALKKEKVAPTGEDAREGLTC 300

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VLS+K+PDP+FSSQTK+KLVSSEVR  VE   ++GLS W EEHP+EAK++V K+++A+  
Sbjct: 301 VLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLCSEGLSQWFEEHPVEAKMVVAKIIEAASA 360

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R+AAR+ARDLTRRK  LDI+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQ
Sbjct: 361 REAARKARDLTRRKSALDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQ 420

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           A+LPLRGKILNVERARFD+MLSS+ IGTLI ALGTGIG+D FD +KLRYHKII+
Sbjct: 421 AVLPLRGKILNVERARFDRMLSSELIGTLILALGTGIGRDDFDADKLRYHKIIL 474


>gi|94957786|gb|ABF47143.1| DNA gyrase subunit B [Entomoplasma somnilux]
          Length = 552

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 239/530 (45%), Positives = 353/530 (66%), Gaps = 6/530 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
            +SGLHH+++E+LDN+IDE++ G A  I V++  DG   V D+GRGIP  + K+ G SA 
Sbjct: 3   SKSGLHHLVWEILDNSIDEAMAGAAHEIKVSITKDGEIIVQDDGRGIPVGIQKDSGKSAL 62

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL- 155
           E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + ++R+G  +   F NG   
Sbjct: 63  ELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVIVERDGKKFHQLFSNGGTI 122

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
            + L +   +   TGT V F P  +IF    +F+Y T+++++++L++LN  ++++L+D+R
Sbjct: 123 QSELEILSDSS-RTGTTVRFKPDPEIFQESVNFDYITIKNKVKQLAYLNKGIKLNLVDER 181

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
             +   +   +  GI  +V   +  K  +  +     G  ++I +++A+++N  Y+EN++
Sbjct: 182 IDKA--VNFHFPNGILDYVREENETKTKINPNVFYTDGKFEDIEVEVALQYNADYNENLI 239

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F NNI   +GGTH  GLR +LTR I  Y EK   + K  +    DD +EG   +LSI+ 
Sbjct: 240 TFVNNINTHEGGTHEDGLRQSLTRVINRYAEKVVKANKQPQKFSWDDVKEGVICILSIRH 299

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            DP+F  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   R AA+R
Sbjct: 300 TDPQFEGQTKTKLANPDAKKAVDTIVGDAFEEFLLKSPDDAKAILDKNTNAQKARIAAQR 359

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+ TRRKG LD  SLPGKLADC  +DP  +EL+LVEGDSAGGSAK GR+R++QAILPLR
Sbjct: 360 AREETRRKGALDTFSLPGKLADCETKDPTIAELYLVEGDSAGGSAKTGRNRKHQAILPLR 419

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK+LNVER +  +  ++ EI +++TA+GTGI +D  D++K+RY KI+IMTDADVDGAHIR
Sbjct: 420 GKVLNVERVQEARAFTNNEIKSIVTAIGTGIKEDL-DLSKIRYGKIVIMTDADVDGAHIR 478

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           TLLLTFF+R M  L+ NG ++I +PPL+ I  GK + Y   +  LE+  +
Sbjct: 479 TLLLTFFYRYMKDLVRNGNIFIAQPPLFKIEAGKKVAYAYSDAELEELKL 528



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 3/132 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  QE      +++ + +  I    ++    S      +V      V    +    
Sbjct: 422 VLNVERVQEARAFTNNEIKSIVTAIGTGIKEDLDLSKIRYGKIVIMTDADVDGAHIRTLL 481

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF--SIGRKGISMQR 738
             F +    K +  N         L  I  G K+      + L+ +          ++QR
Sbjct: 482 LTFFYRY-MKDLVRNGNIFIAQPPLFKIEAGKKVAYAYSDAELEELKLGDFSGSRFTIQR 540

Query: 739 YKGLGEMNASQL 750
           YKGLGEM+  QL
Sbjct: 541 YKGLGEMDPMQL 552


>gi|116252261|ref|YP_768099.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256909|emb|CAK08003.1| putative DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 700

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/598 (38%), Positives = 340/598 (56%), Gaps = 18/598 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            +  Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DNA+DE++ G+A+ I 
Sbjct: 57  NSDDYGASSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNAMDEAVAGHANFIE 115

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L+++G  TVSDNGRGIP + H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 116 VYLDLEGYLTVSDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVG 175

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ + R   +Y   F  G+    L   G   N  GT V F P   IF  
Sbjct: 176 VSVVNALSDDLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQIFGD 235

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F+   +    R  ++L   V+I    +       S  P +    + GG++ ++    
Sbjct: 236 HMKFDAARVFRMARSKAYLFGGVEIRWSCEAGVLPEGSEVPDKAVFHFPGGLKDYLQATM 295

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             +  + +     +  +   + S++ A+ W  G    V  + N IP  +GGTH +GLR A
Sbjct: 296 GKEFTVTREIFAGKTEKTSGHGSMEWAITWYGG-DPQVHSYCNTIPTPEGGTHEAGLRIA 354

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT+ + +Y E +   +  +  +  DD       +LS+ + +P F  QTK+KL + E + +
Sbjct: 355 LTKGLKAYAELTQNKRAAQ--ITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRI 412

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ + D    +L ++P E+  ++  V++        RR      RK  +    LPGKLA
Sbjct: 413 VENALRDPFDHYLADNPNESAKLLDWVIER-AEERLRRRKEKEVNRKSAVRKLRLPGKLA 471

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS+   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q++ 
Sbjct: 472 DCSQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLA 531

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G  +  +    LRY +II+MTDADVDGAHI +LL+TFF+++MP L+  G L+
Sbjct: 532 DLIQALGCGT-RSKYRDEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLF 590

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +  PPLY IT+G    Y +D+    + +  +   +        KG+     +   + +
Sbjct: 591 LAVPPLYKITQGSKSAYARDDNHRAELMQTEFKGKAKVEISRFKGL--GEMMPAQLKE 646



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    +LA+ +  +   +   +       + ++      V    +    
Sbjct: 513 ILNVASAGREKLGANQQLADLIQALGCGTRSKYRDEDLRYERIIVMTDADVDGAHIASLL 572

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP---CSLLDTIFSIGRKGISMQ 737
             F +    + +    +      +  +                 L+ T F  G+  + + 
Sbjct: 573 ITFFYQEMPELVRGGHLFLAVPPLYKITQGSKSAYARDDNHRAELMQTEFK-GKAKVEIS 631

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LL+V I   D          LMG + E R  FIQ+ 
Sbjct: 632 RFKGLGEMMPAQLKETTMDPSKRTLLKVLIDEVDFEGTRSAVDDLMGTKPEARFRFIQDR 691

Query: 796 SLPS-ALDI 803
           +  +  LDI
Sbjct: 692 AAFAENLDI 700


>gi|110679338|ref|YP_682345.1| DNA topoisomerase IV subunit B [Roseobacter denitrificans OCh 114]
 gi|109455454|gb|ABG31659.1| DNA topoisomerase IV, B subunit [Roseobacter denitrificans OCh 114]
          Length = 682

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/650 (35%), Positives = 336/650 (51%), Gaps = 18/650 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S   + + YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE++ G+A
Sbjct: 36  SSGTEATDYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEAVAGHA 94

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             I V L+ D + T+ DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+ SGGL
Sbjct: 95  TRIEVELHEDYAITIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYETSGGL 154

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  + +++ R   ++E  F  G+   P+   G   N  GT VTF   ++
Sbjct: 155 HGVGASVVNALSDSMVVQVARNKQLFEQRFSRGVPLGPVQELGPTQNRRGTTVTFHADAE 214

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFVSYLDR 238
           IF    F    L + +R  ++L S V+I           P+E T  + GG+  ++     
Sbjct: 215 IFGAHRFKPARLFNSIRSKAYLFSGVEIRWKSAIADGDTPQEATFHFPGGLSDYLRETLG 274

Query: 239 HKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                  +P        +   +   ++ A+ W       +  + N +P  +GGTH++G  
Sbjct: 275 TATTYADNPFAGSVDFKEKFGEPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVAGFW 334

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+ + I +Y E S   K  +  +  +D   G  +++S  + +P F  QTK++L +    
Sbjct: 335 AAILKGIKAYGELSNTKKAAQ--ITREDLTSGGCALVSCFIAEPAFVGQTKDRLSTEAAA 392

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            + E  V D    WL      A  I+  ++         RR    T RK       LPGK
Sbjct: 393 KMTEGAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETARKSATKKLRLPGK 451

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC+ +D   +ELF+VEGDSAGGS K  R+R  QA+LPL+GKILNV  A   K+ ++ E
Sbjct: 452 LTDCTSKDRAGTELFIVEGDSAGGSGKGARNRNTQALLPLKGKILNVLGAASSKLGTNAE 511

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI  LL+TFF+ QM  LI  G 
Sbjct: 512 ISDLCEALGCGMG-TKFNLDDLRYEKIIIMTDADVDGAHIAALLMTFFYTQMRPLIDAGH 570

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI 591
           LY+  PPL+ +T+G    Y   EE   D+L      +           G +   DL+   
Sbjct: 571 LYLACPPLFRLTQGAKRVYCLTEEEKNDWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETT 630

Query: 592 DD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            D      I   I +  P      +E+ +           + N     +L
Sbjct: 631 MDPTTRKLIRVSIDEDVPGETGDLVERLMGKKPELRFQYIQENAKFVEEL 680



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            + ++      V    +      F +      I +  +      +  L     ++     
Sbjct: 534 YEKIIIMTDADVDGAHIAALLMTFFYTQMRPLIDAGHLYLACPPLFRLTQGAKRVYCLTE 593

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
               D +   +G KG I + R+KGLGEM+A  L ETT++P TR L+RV I +    +  D
Sbjct: 594 EEKNDWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPTTRKLIRVSIDEDVPGETGD 653

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++IQEN+     LD+
Sbjct: 654 LVERLMGKKPELRFQYIQENAKFVEELDV 682


>gi|294012212|ref|YP_003545672.1| DNA gyrase subunit B [Sphingobium japonicum UT26S]
 gi|292675542|dbj|BAI97060.1| DNA gyrase subunit B [Sphingobium japonicum UT26S]
          Length = 658

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/634 (36%), Positives = 347/634 (54%), Gaps = 26/634 (4%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +++     YDA +I++L+GL+ V++RP MYIG TD E  LHH+  EVLDN++DE++ G+A
Sbjct: 8   ANSSTAPQYDASAIEVLEGLEPVRRRPGMYIGGTD-ERALHHLASEVLDNSMDEAVAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             I V L      T++DNGRGIP D H +  G SA EVI+T LH+GGKF+ K+Y  SGGL
Sbjct: 67  TRIEVLLEPGNRLTITDNGRGIPVDPHPKFPGKSALEVILTTLHSGGKFSDKAYATSGGL 126

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS    + + R   ++  SF  G+  + L   G+A N  GT V+F+P ++
Sbjct: 127 HGVGISVVNALSISTVIEVARNKELFRQSFTQGLPSSDLQKVGAAPNRRGTSVSFIPDTE 186

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYL 236
           IF  Q F    L    R  ++L + V+I             P E    + GG+   +   
Sbjct: 187 IFGEQKFKPSRLYRLARSKAYLFAGVEIRWKCAPELIADETPAEAVFQFPGGLADHLKEQ 246

Query: 237 DRHKKPLMQSPIRIQGS------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
              ++    +             R   ++   +  +  Y      + N IP  DGGTH +
Sbjct: 247 VGDRECATSAFFSGSQDFPDAAGRVEWAVAWPLWSDGSYS----WYCNTIPTPDGGTHET 302

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+AL + I ++ +     K     +  DD       +LS+ + DP+F SQTK++L S 
Sbjct: 303 GLRAALVKGIRAFGDLVGQKKAKD--ITADDIVTSSEIMLSVFIRDPQFQSQTKDRLTSP 360

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK-GVLDIAS 409
           E   +VE+ V D    +L +H    K ++  VLD    R   ++ +++ R+         
Sbjct: 361 EAARLVENAVRDHFDHYLSDHMERGKALLAYVLDRMDERLKRKQEKEVKRKTATNSRKLR 420

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS  DP+ +E+FLVEGDSAGGSAKQ R R+ QAILPLRGKILNV  A   K+L
Sbjct: 421 LPGKLTDCSNDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTAKIL 480

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++QEI  +I ALG G  +D  + + LRY +I+IMTDADVDGAHI TLL+TFFF++MP L+
Sbjct: 481 ANQEIADMILALGCGTRKDC-NPDNLRYERIVIMTDADVDGAHIATLLMTFFFQEMPELV 539

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK------GVIS 583
             G LY+ +PPLY +  G    Y +D+   E+ L  +   +++E+           G + 
Sbjct: 540 RRGHLYLAQPPLYRLVAGGKSLYARDDAHREEILAKEFKGKKVEVSRFKGLGEMNPGQLR 599

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
           +  +       +++            +  +E+ +
Sbjct: 600 ETTMDPKTRSLIRVTLPDDIEDRQQVRELVERLM 633



 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 7/187 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    ++A+ +  +   + K  +      + +V      V    +    
Sbjct: 468 ILNVASANTAKILANQEIADMILALGCGTRKDCNPDNLRYERIVIMTDADVDGAHIATLL 527

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRY 739
             F F    + +    +      +  L+  G  +         + +    + K + + R+
Sbjct: 528 MTFFFQEMPELVRRGHLYLAQPPLYRLVAGGKSLYARDDAHREEILAKEFKGKKVEVSRF 587

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVK----ITDASQADDLFSRLMGDEVEPRREFIQEN 795
           KGLGEMN  QL ETT++P TRSL+RV     I D  Q  +L  RLMG     R  FIQEN
Sbjct: 588 KGLGEMNPGQLRETTMDPKTRSLIRVTLPDDIEDRQQVRELVERLMGTNPAHRFAFIQEN 647

Query: 796 SLPSALD 802
           +  + +D
Sbjct: 648 A--ANVD 652


>gi|227502246|ref|ZP_03932295.1| DNA gyrase subunit B [Corynebacterium accolens ATCC 49725]
 gi|227077070|gb|EEI15033.1| DNA gyrase subunit B [Corynebacterium accolens ATCC 49725]
          Length = 663

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 260/666 (39%), Positives = 370/666 (55%), Gaps = 55/666 (8%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T G  GLHH+I+E++DN++DE++ G+AD +TV L  DG   V DNGRGIP ++H 
Sbjct: 1   MYIGST-GSRGLHHLIWEIVDNSVDEAMAGFADKVTVKLLEDGGVEVIDNGRGIPVEMHA 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
             G    +V+MT+LHAGGKF+  SY VSGGLHGVG+SVVNALS+ ++  IKREG  +  +
Sbjct: 60  S-GAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRVEAEIKREGKHWYQN 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F N I D  L V G     TGT++ F    +IF   +F+YDT+  RL+E++FLN  + I 
Sbjct: 119 FQNAIPD-DL-VEGGNARGTGTKIRFWADPEIFETTEFDYDTIARRLQEMAFLNKGLTIE 176

Query: 210 LIDKRSPEPREI------------------------------------------------ 221
           LID+R  + +                                                  
Sbjct: 177 LIDERVTQEQIELEEIADAESGEASADETSFDDVPDAGDTFNEEADSKNVTKADKKRRKK 236

Query: 222 -TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y  G+  +V +L++ K  +  + +  +   ++  +++A++WN GY ++V  F N I
Sbjct: 237 ITFHYPEGLTDYVKFLNKSKSAIHPTIVSFEAKGEDHEVEVALQWNQGYKQSVHTFANTI 296

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y ++    K    ++ GDDCREG  +V+S+K+ DP+F 
Sbjct: 297 NTHEGGTHEEGFRAALTSLMNRYAKEHKLIKDKDGNLSGDDCREGLAAVISVKVGDPQFE 356

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE++  V+  VN+ ++ W + +P EAK I+ K + ++  R AAR+AR++ R
Sbjct: 357 GQTKTKLGNSEIKGFVQRSVNEYVNDWFDANPAEAKAIINKAVSSAHARMAARKAREMVR 416

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP+ SEL++VEGDSAGGSAK GR    QAILPLRGKILNV
Sbjct: 417 RKSATDLGGLPGKLADCRSKDPRSSELYIVEGDSAGGSAKAGRDSMFQAILPLRGKILNV 476

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR DK+L + E+  +ITALGTGI ++ FDI KLRY KI++M DADVDG HI TLLLT 
Sbjct: 477 EKARMDKVLKNAEVQAIITALGTGIHEE-FDIKKLRYDKIVLMADADVDGQHIATLLLTL 535

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSK 579
            FR MP L+ +G +Y+  PPLY +   K    Y   ++  +  L             D  
Sbjct: 536 LFRFMPQLVEDGHVYLANPPLYKLKWSKGTPGYAFSDDERDKLLAEGLEQNRKINKDDGI 595

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
                    N  +                D    ++A          D     S  ++ A
Sbjct: 596 QRYKGLGEMNASELWETTLDPSTRLLRRVDLEDAQRADELFSILMGDDVAARRSFITRRA 655

Query: 640 NRLNFI 645
             + F+
Sbjct: 656 KDVRFL 661



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 8/88 (9%)

Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D + + G    + I+    +QRYKGLGEMNAS+LWETTL+P TR L RV + DA +AD+L
Sbjct: 576 DKLLAEGLEQNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRLLRRVDLEDAQRADEL 635

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI   +     LDI
Sbjct: 636 FSILMGDDVAARRSFITRRAKDVRFLDI 663


>gi|72162533|ref|YP_290190.1| DNA topoisomerase IV subunit B [Thermobifida fusca YX]
 gi|71916265|gb|AAZ56167.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobifida fusca YX]
          Length = 702

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/692 (34%), Positives = 354/692 (51%), Gaps = 52/692 (7%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +D      Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY 
Sbjct: 7   TDFHDPEEYSARHLSVLEGLEAVRKRPGMYIGSTDS-RGLTHCMWEIIDNSVDEALAGYC 65

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V L+ DGS  V DNGRGIP D+    G+S  E++MT+LHAGGKF   SY  SGGLH
Sbjct: 66  TRIEVVLHADGSVEVRDNGRGIPVDIEPSSGLSGVELVMTKLHAGGKFGSGSYTASGGLH 125

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVVTGSAG- 166
           GVG SVVNALS+ L + + R G+ Y MSF  GI      D P         L        
Sbjct: 126 GVGASVVNALSARLDVEVDRGGHTYAMSFRRGIPGVFDMDGPDAGFTPRSGLEKIRKIPA 185

Query: 167 NDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITM 223
             TGT V F     IF    + + + L  R R+ +FL   + I++ D+R+   EP E   
Sbjct: 186 KVTGTRVRFWADRQIFLKDAEISREALVERARQTAFLVPGLSIAIRDERTEGEEPYEEEF 245

Query: 224 FYKGGIEAFVSYLDRHKK-----------------PLMQSPIRI--QGSRDNISIDLAMR 264
            + GGI  F  YL                      P++     +        + +D+A+R
Sbjct: 246 RFDGGIGEFCDYLAPDTAVSPLLRIEGSGTFTETVPVLDDQGHMVPTDVERRLDVDIALR 305

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           W  GY   V  F N I    GGTH+SG   AL R I   +  +   K +   V  +D  E
Sbjct: 306 WGTGYDTVVRSFVNVIATPKGGTHVSGFERALVRVINDQLRATKLLKANDEPVTKEDVLE 365

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI----IVK 380
           G T+V+++++P+P+F  QTKE L +S    +V   V+  + A+L       K     +++
Sbjct: 366 GLTAVVTVRLPEPQFEGQTKEVLGTSAASRIVSQIVSQHMRAFLTSTKRAEKQQARTVLE 425

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K+++A+  R AAR+ R+  RRK  L+ ++LP KL DC     ++SELF+VEGDSA G+AK
Sbjct: 426 KIVNAAKARLAARQQRETQRRKNALENSALPAKLVDCRSEGLERSELFIVEGDSALGTAK 485

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
             R  E QA+LP+RGKILNV++A    ML + E   +I  +G G G+  FD++  RY ++
Sbjct: 486 LARDSEFQALLPIRGKILNVQKASVADMLKNAECAAIIQVIGAGSGRT-FDLDAARYGRV 544

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEES-- 558
           I+M DADVDGAHIR LLLT F+R M  ++  G ++   PPL+ I      +         
Sbjct: 545 ILMADADVDGAHIRCLLLTLFYRYMRPMLEAGRVFAAVPPLHRIELTNVRRKRGARPEDR 604

Query: 559 ----LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
                 D  ++Q L+E        K  + +      +D     +  +   Y    +  ++
Sbjct: 605 YIYTYSDAELHQKLAELAAKGITWKEPVQRYKGLGEMDADQLAETTMDPRYRTLRRIRLK 664

Query: 615 QAVIS-GVFNCESDQEIN--VSLASKLANRLN 643
            A  +  +F      E+    +  ++ A  L+
Sbjct: 665 DAAEAEAMFELLMGNEVAPRRAFIAQGARELD 696



 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 6/97 (6%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
               I       L   +  +  KGI+    +QRYKGLGEM+A QL ETT++P  R+L R+
Sbjct: 602 EDRYIYTYSDAELHQKLAELAAKGITWKEPVQRYKGLGEMDADQLAETTMDPRYRTLRRI 661

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           ++ DA++A+ +F  LMG+EV PRR FI + +    LD
Sbjct: 662 RLKDAAEAEAMFELLMGNEVAPRRAFIAQGARE--LD 696


>gi|68138705|gb|AAY86003.1| GyrB [Burkholderia cenocepacia]
          Length = 636

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 279/640 (43%), Positives = 396/640 (61%), Gaps = 20/640 (3%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G    M F  G+              +P++VTG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 AGGVKGFVEYINKTKTNLHPTVFFATGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVL
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+
Sbjct: 298 DGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARY 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQM
Sbjct: 358 DKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQM 417

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS +
Sbjct: 418 PDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGD 477

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            L       L    +I+     +D   +E  +     +  S++    + A  L   L+  
Sbjct: 478 ALGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHAALHDE 536

Query: 646 AEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           A K+E      +        + V+R   G     V++     +   +     +N  +   
Sbjct: 537 ALKNEVRVVPSYDPVREQRALNVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLI 596

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                +      + +    S +  + +   + +S QRYKG
Sbjct: 597 GEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 636


>gi|144898429|emb|CAM75293.1| DNA gyrase subunit B [Magnetospirillum gryphiswaldense MSR-1]
          Length = 756

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 240/596 (40%), Positives = 346/596 (58%), Gaps = 21/596 (3%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD  Q      + Y A  I++L+GL+ V++RP MYIG TD    LHH++ EVLDN++DE
Sbjct: 94  MSDLFQQLAPKGTEYSAKDIEVLEGLEPVRRRPGMYIGGTDD-RALHHLVAEVLDNSMDE 152

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSY 114
           ++ G+A  I + L++ G  TV DNGRGIP D H +    SA EVI+T LH+GGKF   +Y
Sbjct: 153 AVAGHASWIELELDVSGHATVRDNGRGIPVDPHPKFPDKSALEVILTTLHSGGKFGGDAY 212

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L + + R+  ++  SF  G    PL + G   N  GT + 
Sbjct: 213 KVSGGLHGVGVSVVNALSDSLVVEVARDRQLWRQSFSKGAPLGPLSLVGPVQNRRGTALR 272

Query: 175 FLPSSDIFSVQDFNYDTLQHRL-RELSFLNSSVQISLIDKR------SPEPREITMFYKG 227
           F P  +IF  +        +R+ R  ++L   VQI               P E  + +  
Sbjct: 273 FHPDPEIFGDRARLKARTLYRMARSKAYLFRGVQIRWKCDPLLIDDGDDIPAEDILHFPN 332

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKD 284
           G+  F++ + + +  + +         + D   ++ A+ W D   +  V  + N +P  +
Sbjct: 333 GLADFLAAVMKDRPLVTRGFFAGTAPLADDMGQVEWALVWPDDDEDGFVNTYCNTVPTPE 392

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH +GLR+ALT+ +  Y +           V  +D   G   ++S+ + DP+F  QTK
Sbjct: 393 GGTHEAGLRNALTKGLRGYGDLLGNK--KAGQVTAEDVMGGACVLVSLFIRDPQFQGQTK 450

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           EKLVS+E   +VE+ + D    WL   P   K ++ ++++ +  R   + A++ T RK  
Sbjct: 451 EKLVSTEATRLVENAIKDHFDHWLSADPESGKALMARLIEKAEERLRKKVAKE-TSRKTA 509

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
                LPGKLADCS +    +ELFLVEGDSAGGSAKQGR+RE QAILPL+GKILNV  A 
Sbjct: 510 TKKLRLPGKLADCSRQVNVGTELFLVEGDSAGGSAKQGRNRETQAILPLKGKILNVASAS 569

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            DK+ ++QEI  L+ ALG G  ++SFD  KLRY +IIIMTDADVDGAHI +LL+TFF+++
Sbjct: 570 ADKLRANQEIKDLMEALGCGS-RESFDAEKLRYERIIIMTDADVDGAHIASLLMTFFYQE 628

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           MP LI  G L++  PPLY +  G+++ Y +D+   ++ +      ++       KG
Sbjct: 629 MPELIRTGHLFLAMPPLYRLAHGQTVIYARDDSHKDELMKTVFAGKKNIEISRFKG 684



 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 14/196 (7%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    ++ + +  +   S +S+       + ++      V    +    
Sbjct: 562 ILNVASASADKLRANQEIKDLMEALGCGSRESFDAEKLRYERIIIMTDADVDGAHIASLL 621

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  L      I          L+ T+F+ G+K I + 
Sbjct: 622 MTFFYQEMPELIRTGHLFLAMPPLYRLAHGQTVIYARDDSHKDELMKTVFA-GKKNIEIS 680

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI------TDASQADD---LFSRLMGDEVEPR 788
           R+KGLGEM  +QL ETT+NP  R+L+RV I       D  +A D   L   LMG + E R
Sbjct: 681 RFKGLGEMPPAQLKETTMNPANRTLIRVTIPAGRTEEDQEEAKDVANLVETLMGKKPELR 740

Query: 789 REFIQENSLPS-ALDI 803
             +IQ+++  +  LD+
Sbjct: 741 FHYIQKHAKFARDLDV 756


>gi|190891866|ref|YP_001978408.1| DNA gyrase, B subunit [Rhizobium etli CIAT 652]
 gi|190697145|gb|ACE91230.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652]
          Length = 693

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/629 (36%), Positives = 347/629 (55%), Gaps = 23/629 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            +  Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DNA+DE++ G+A+ I 
Sbjct: 50  NSDDYGASSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNAMDEAVAGHANFIE 108

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L++ G  TV+DNGRGIP + H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 109 VHLDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVG 168

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS +L++ + R   +Y   F  G+    L   G   N  GT V F P + IF  
Sbjct: 169 VSVVNALSDFLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDAQIFGE 228

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLD 237
              F+   +    R  ++L   V+I          + S  P +    + GG++ ++    
Sbjct: 229 HMKFDAARVFRMARSKAYLFGGVEIRWSCDAGVLPEGSEVPDKAVFHFPGGLKDYLQATM 288

Query: 238 RHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             +  + +     +  +   + S++ A+ W  G    V  + N IP  +GGTH +GLR A
Sbjct: 289 GKEFTVTREIFAGKTEKASGHGSMEWAITWYGG-DPQVHSYCNTIPTPEGGTHEAGLRIA 347

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT+ + +Y E +   +  +  +  DD       +LS+ + +P F  QTK+KL + E + +
Sbjct: 348 LTKGLKAYAELTQNKRAAQ--ITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRI 405

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ + D    +L ++P EA  ++  V++        RR      RK  +    LPGKLA
Sbjct: 406 VENALRDPFDHYLADNPNEAAKLLDWVIER-AEERLRRRKEKEVNRKTAVRKLRLPGKLA 464

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS+   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K  ++Q++ 
Sbjct: 465 DCSQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKFGANQQLA 524

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            LI ALG G  +  +    LRY +II+MTDADVDGAHI +LL+TFF+++MP L+  G L+
Sbjct: 525 DLIQALGCGT-RAKYRQEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLF 583

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +  PPLY IT+G    Y +D+    + +  +   +        KG+     +   +    
Sbjct: 584 LAVPPLYKITQGAKSAYARDDNHRAELMQTEFKGKAKVEISRFKGL--GEMMPAQLK--- 638

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
             +  +        +  I++    G  + 
Sbjct: 639 --ETTMDPSKRTLLRVLIDEVDFEGTRSA 665



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S          +LA+ +  +   +   +       + ++      V    +    
Sbjct: 506 ILNVASAGREKFGANQQLADLIQALGCGTRAKYRQEDLRYERIIVMTDADVDGAHIASLL 565

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP---CSLLDTIFSIGRKGISMQ 737
             F +    + +    +      +  +                 L+ T F  G+  + + 
Sbjct: 566 ITFFYQEMPELVRGGHLFLAVPPLYKITQGAKSAYARDDNHRAELMQTEFK-GKAKVEIS 624

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LLRV I   D          LMG + E R  FIQE 
Sbjct: 625 RFKGLGEMMPAQLKETTMDPSKRTLLRVLIDEVDFEGTRSAVDDLMGTKPEARFRFIQER 684

Query: 796 SLPS-ALDI 803
           +  +  LDI
Sbjct: 685 AAFAENLDI 693


>gi|83942882|ref|ZP_00955342.1| DNA topoisomerase IV, B subunit [Sulfitobacter sp. EE-36]
 gi|83845890|gb|EAP83767.1| DNA topoisomerase IV, B subunit [Sulfitobacter sp. EE-36]
          Length = 653

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/656 (35%), Positives = 334/656 (50%), Gaps = 23/656 (3%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD           YDA SIQ+L+ ++ V+ RP MYIG  D    LHHM+ E++DN++DE
Sbjct: 1   MSDLLSGAQSNAKEYDASSIQVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIIDNSMDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSY 114
           ++ G+A  I + L+ +G  TV DNGRGIPTD H +    SA E+I   L+AGGKF+  SY
Sbjct: 60  AVAGHATWIELELHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + SGGLHGVG SVVNALS  L++ + R   ++ M F  GI    L   G+A N  GT VT
Sbjct: 120 ETSGGLHGVGSSVVNALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRRGTAVT 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAF 232
           F P ++IF         L    R  ++L S V+I      +    P+E T  + GG+  +
Sbjct: 180 FHPDAEIFGPLKLKPARLFAMARSKAYLFSGVEIRWKCGQQDGDTPQEATFHFPGGLSDY 239

Query: 233 VSYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           ++   +      + P        +       ++ A+ W       +  + N IP  +GGT
Sbjct: 240 LNETLKGSTTYAEHPFGGTVDFREKFNAPGKVEWAINWTPSRDGFIQSYCNTIPTPEGGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G  SA+ + + +Y E          ++  DD   G  +++S  + +P F  QTK++L
Sbjct: 300 HEAGFWSAILKGVKAYGELVGNK--KAGTITRDDLITGGCALVSCFIREPEFVGQTKDRL 357

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            + + + +VE+ V D    WL      A  I+  ++         RR    T RK     
Sbjct: 358 ATVDAQRMVENAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETARKTATKK 416

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKL DC+ +  + +ELF+VEGDSAGGS K  R+R  QA+LPL+GKILNV  A   K
Sbjct: 417 LRLPGKLTDCTSKTREGTELFIVEGDSAGGSGKGARNRNTQALLPLKGKILNVLGAASSK 476

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           + ++ EI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI  LL+TFF+ QM  
Sbjct: 477 LNTNAEINDLCEALGVGMG-TKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRP 535

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI--ELFCDSKGVISKN 585
           +I  G LY+  PPLY +T+G    YV D+   + +L      +           G +   
Sbjct: 536 MIDAGHLYLACPPLYRLTQGAKRVYVADDAEKDMWLEKGLGGKGKIDLQRFKGLGEMDAK 595

Query: 586 DLRNFIDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           DL+    D      I   + +  P      +E+ +           + N     +L
Sbjct: 596 DLKETTMDPTTRKLIRVTVDEDMPGETGDLVERLMGKKPELRYQYIQENAQFVEEL 651



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F +      I +  +      +  L     ++ +   
Sbjct: 505 YDKIIIMTDADVDGAHIAALLMTFFYTQMRPMIDAGHLYLACPPLYRLTQGAKRVYVADD 564

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I +QR+KGLGEM+A  L ETT++P TR L+RV + +    +  D
Sbjct: 565 AEKDMWLEKGLGGKGKIDLQRFKGLGEMDAKDLKETTMDPTTRKLIRVTVDEDMPGETGD 624

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++IQEN+     LD+
Sbjct: 625 LVERLMGKKPELRYQYIQENAQFVEELDV 653


>gi|164510808|emb|CAK18887.1| topoisomerase IV subunit B [Staphylococcus intermedius]
          Length = 637

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/646 (38%), Positives = 370/646 (57%), Gaps = 21/646 (3%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG TD   GLHH++YEV+DN++DE L GY + I VT+N D S TV+DNGRG+PT  H 
Sbjct: 1   MYIGSTDK-RGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTH- 58

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
             G    EVI T LHAGGKF Q  YK SGGLHGVG SVVNALS  L + I R+G I+E  
Sbjct: 59  RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLTVEIHRDGEIFEQQ 118

Query: 150 FIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQ 207
           F + G+    L+  G     TGT VTF P  +IF     FN++TL  RL+E +FL  +++
Sbjct: 119 FAHGGVPQTKLIKKGKTK-RTGTTVTFKPDPEIFKAATSFNFETLSERLQESAFLLQNLK 177

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           I+L D+R+ + R     Y+ GI+AFVSY++  K+ L    +  QG+ + I +D++ ++ND
Sbjct: 178 ITLEDRRAGKERSEVYHYEEGIKAFVSYVNEGKEVLHDVAL-FQGTSNEIEVDVSFQYND 236

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y E+++ F NN+  KDGGTH  G ++A+TR    Y  +    K   +++ G+D REG T
Sbjct: 237 QYSESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGNDIREGLT 296

Query: 328 SVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
           +++S+++P+   +F  QTK KL + E RS V++ V + L  +LEE    +K +VKK + A
Sbjct: 297 AIISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLVKKAIKA 356

Query: 386 SMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
              R+AAR+AR+   + +K       L GKL     ++ +K+EL+LVEGDSAGGSAK GR
Sbjct: 357 QQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGR 416

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            R+ QAILPLRGK++N E+AR + +  ++EI T+I  +G G+G D F++    Y++IIIM
Sbjct: 417 DRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGND-FNLEDSNYNRIIIM 475

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESL 559
           TDAD DGAHI+ LLLTFFF+ M  L+  G +YI  PPLY +     + K + Y   +E L
Sbjct: 476 TDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAWTDEEL 535

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           E           +       G ++ + L         ++   +          +  +   
Sbjct: 536 EKLQREMGKGF-VLQRYKGLGEMNPDQLWET-----TMNPETRTLIRVQIDDEVRSSQRV 589

Query: 620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
                +        +   +   +       E      +++ DI+ +
Sbjct: 590 STLMGDKVAPRREWIERHVQFGMQEDLSILENDEIQILSDEDIVEE 635



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 350 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 409

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       ++   +N 
Sbjct: 410 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLEDSNY 469

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717
           + ++           +      F F      + + R+      +  L        KI   
Sbjct: 470 NRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYA 529

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR+L+RV+I D  ++    
Sbjct: 530 WTDEELEKLQREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRV 589

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+V PRRE+I+ +
Sbjct: 590 STLMGDKVAPRREWIERH 607


>gi|319408573|emb|CBI82226.1| topoisomerase protein [Bartonella schoenbuchensis R1]
          Length = 692

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 246/651 (37%), Positives = 360/651 (55%), Gaps = 21/651 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           DN + + Y+A SI++L+GL+ V+ RP MYIG TD    LHH+  E++DNA+DE++ GYAD
Sbjct: 46  DNAETNDYNASSIRVLEGLEPVRLRPGMYIGGTDS-KALHHLFSEIIDNAMDEAVAGYAD 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           +I V+L+ DG  TV+DNGRGIP + H +    S  EVIMT+LH+GGKF+ K+Y+ SGGLH
Sbjct: 105 LIDVSLDKDGYLTVTDNGRGIPIENHPQMPDKSTLEVIMTQLHSGGKFDGKAYQTSGGLH 164

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  +++ + RE  +Y   F  GI  + L   G   N  GT V F P S I
Sbjct: 165 GVGISVVNALSDDMEVEVARERKLYRQRFSRGIPQSGLEDLGDVYNRRGTRVRFHPDSKI 224

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVS 234
           F     F  + +    R  ++L S V+I            +  P + T  +  G++ ++S
Sbjct: 225 FGEKTAFEPEKIYKMARSKAYLFSGVKIRWSCDPIVLEGINNVPEKATFHFPDGLKDYLS 284

Query: 235 YLDRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
                K  +       +  +  ++ S++ A+ W+ G    V  + N IP ++GG+H  GL
Sbjct: 285 SSLNSKYCITTEIFSGKTKQRANHGSVEWAVAWHSG-DAGVQSYCNTIPTREGGSHEIGL 343

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R AL R + +Y E     +     +  DD      +VLS+ + +P F  QTK++L + E 
Sbjct: 344 RQALLRGLKAYAELIGNKRAA--IITSDDVMASAVAVLSVFIREPEFVGQTKDRLATIEA 401

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE+ + D    WL   P EA  ++  V++ +  R   R+ R+   RK  +    LPG
Sbjct: 402 QRIVENAIRDPFDHWLANSPQEATKLLDWVIERAEERVKRRQDRE-INRKTAVRKLRLPG 460

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +KM++SQ
Sbjct: 461 KLADCSQNSAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAAREKMITSQ 520

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I  LI  LG G  +  +  + LRY ++IIMTDADVDGAHI +LL+TFFF++MP LI  G
Sbjct: 521 TISDLILVLGCGT-RSKYREDDLRYERVIIMTDADVDGAHIASLLITFFFQEMPDLIRGG 579

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNF 590
            LY+  PPLY I++G  + Y +++   ++ L  +   +           G +    L+  
Sbjct: 580 HLYLAVPPLYRISQGGKIAYARNDAHKDELLKTEFTGKAKIEIGRFKGLGEMRAEQLKET 639

Query: 591 IDDALK---IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                K   +   I        K  +E  + S         + N + A  L
Sbjct: 640 TMHPQKRTLLRISINALEMQKTKDIVESLMGSKPEARFRFIQENSTFAHNL 690



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 13/163 (7%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFS-----FGSKYKRIFSNRIEENYLTILS 706
                    D+  +R+   +     ++G+ I S     F  +   +         +  L 
Sbjct: 532 GTRSKYREDDLRYERVI--IMTDADVDGAHIASLLITFFFQEMPDLIRGGHLYLAVPPLY 589

Query: 707 LICNGDKIKITGPCSLLDTIFSI---GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
            I  G KI      +  D +      G+  I + R+KGLGEM A QL ETT++P  R+LL
Sbjct: 590 RISQGGKIAYARNDAHKDELLKTEFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLL 649

Query: 764 RVKIT--DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           R+ I   +  +  D+   LMG + E R  FIQENS  +  LDI
Sbjct: 650 RISINALEMQKTKDIVESLMGSKPEARFRFIQENSTFAHNLDI 692


>gi|302875224|ref|YP_003843857.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
 gi|307688905|ref|ZP_07631351.1| DNA topoisomerase IV subunit B [Clostridium cellulovorans 743B]
 gi|302578081|gb|ADL52093.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
          Length = 643

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 23/600 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SYD  S+  L+ L+ V+ RP MYIG T G  GLHH ++E+LDN+IDE   GY + +T+ 
Sbjct: 3   NSYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCLWEILDNSIDEITNGYGNKVTII 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN D S T+ DNGRG+PT +H  +  +  E++ T LH GGKFN  +YK SGGLHGVG +V
Sbjct: 62  LNKDKSITIMDNGRGVPTGIHPIKKKTGVEMVYTELHTGGKFNSSNYKTSGGLHGVGAAV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDTGTEVTFL 176
           VNALS WL++ + ++G I++  F             G     L V G   N+TGT+VTFL
Sbjct: 122 VNALSKWLEVEVCQDGKIFKQRFEYAYDKKLKKVMPGTAVTNLEVIGQT-NETGTKVTFL 180

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P  ++FS  D  +DT+  RL+E+SF N  + + LID R  E      F + G+  F+ YL
Sbjct: 181 PDKEVFSTIDIKFDTVDERLKEISFQNKGIFLELIDDRGEEQVRKEYFSERGLLDFIDYL 240

Query: 237 DRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           +  K  L + PI I G R+  ++    ++ M++ D   E ++ + NNIP  + GTH +G 
Sbjct: 241 NEAKTCLHKEPILISGEREIGNVKMYAEVCMQFTDSTTETIMSYVNNIPTTEAGTHETGF 300

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ +TR      +K    K       G+D REG T+++ I + +P F  QTK KL +SE 
Sbjct: 301 KTGMTRAFKDCGKKFGIIKDKD--FDGEDLREGLTAIVKINLTNPIFEGQTKTKLGNSEA 358

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
            +++       L  W+E++   A + +   L  +  ++  ++  +L R+K     A L G
Sbjct: 359 TTMMNDLSYTKLCQWIEDNKELASMFINNALATAARKEKIKKINELERKKVGKGAAPLAG 418

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           K+A C+ +D   SE  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ + + +L S+
Sbjct: 419 KIAVCTSKDKAISEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLGSE 478

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E+    TA+GTGI  D++D   L+Y KIIIM+DADVDG HIRTL +T+ +R M  LI NG
Sbjct: 479 ELKIFNTAIGTGI-LDAYDEKDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPLIANG 537

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDY---LINQSLSEEIELFCDSKGVISKNDLRN 589
            LY+ +PPLY + +      +      +D    +  +     +       G ++   L  
Sbjct: 538 HLYMAQPPLYKVYKESKKGEIHKYAYSDDELESVKKEIGKGALIQRYKGLGEMNPEQLWQ 597



 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 129/356 (36%), Gaps = 30/356 (8%)

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           +    T      TG         K    K  I+ D D DG  +R  L       + + I 
Sbjct: 286 NNIPTTEAGTHETGFKTGMTRAFKDCGKKFGIIKDKDFDGEDLREGLTAIVKINLTNPIF 345

Query: 531 NGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI------------ 572
            G              +  ++  K  Q+++D + L    IN +L+               
Sbjct: 346 EGQTKTKLGNSEATTMMNDLSYTKLCQWIEDNKELASMFINNALATAARKEKIKKINELE 405

Query: 573 -ELFCDSKGVISKN-----DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG---VFN 623
            +        ++            I + + ++           +    Q ++     + N
Sbjct: 406 RKKVGKGAAPLAGKIAVCTSKDKAISEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMN 465

Query: 624 CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683
            E  +  NV  + +L      I      ++       D ++      V    +      +
Sbjct: 466 TEKQKLENVLGSEELKIFNTAIGTGILDAYDEKDLKYDKIIIMSDADVDGYHIRTLWMTY 525

Query: 684 SFGSKYKRIFSNRI---EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
            +      I +  +   +     +      G+  K       L+++     KG  +QRYK
Sbjct: 526 IYRYMRPLIANGHLYMAQPPLYKVYKESKKGEIHKYAYSDDELESVKKEIGKGALIQRYK 585

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           GLGEMN  QLW+TTLNP+TR+L ++ I DA++A+ + S LMG+ VEPR+ ++ + +
Sbjct: 586 GLGEMNPEQLWQTTLNPETRTLYQITIEDAAKAEKMVSLLMGEVVEPRKNYMYKYA 641


>gi|66009805|gb|AAY42704.1| GyrB [Burkholderia pyrrocinia]
          Length = 636

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 284/640 (44%), Positives = 396/640 (61%), Gaps = 20/640 (3%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G    M F  GI              +P++VTG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 AGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TRRKGVL
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTRRKGVL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+
Sbjct: 298 DGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARY 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQM
Sbjct: 358 DKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQM 417

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  VIS +
Sbjct: 418 PDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAVISGD 477

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            L       L    +I      +D   +E  +     +  S++    + A  L   L+  
Sbjct: 478 ALGELARSYLLSRSVIDRLSRLYDPAALEAIMDGVAIDL-SNEASTEASAKALHAALHDE 536

Query: 646 AEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701
           A K+E      +        + V+R   G     V++     +   +     +N      
Sbjct: 537 ALKNEVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVATANTFTGLI 596

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                +      + +T   S +  + +   + +S QRYKG
Sbjct: 597 GEGAVIKRGERSMAVTDFKSAMKWLLADAERNVSKQRYKG 636


>gi|68074485|ref|XP_679158.1| dna gyrase subunit b [Plasmodium berghei strain ANKA]
 gi|56499836|emb|CAI04926.1| dna gyrase subunit b, putative [Plasmodium berghei]
          Length = 849

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 272/884 (30%), Positives = 417/884 (47%), Gaps = 174/884 (19%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YDA  I IL+GL+AV+KRP MYIG+TD   GLH +++E++DNA+DE      + I V 
Sbjct: 40  NNYDAKDIVILEGLEAVRKRPGMYIGNTDS-KGLHQILFEIIDNAVDEYNNHECNQIKVI 98

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF-NQK-------------- 112
           ++ D S T+ DNGRGIP D+H++   SA E ++T LH+G KF +                
Sbjct: 99  IHNDESITIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFLDDDINMILEEEKGKQKK 158

Query: 113 --------------------------------SYKVSGGLHGVGVSVVNALSSWLKLRIK 140
                                            YK S GLHGVG+SV NALS ++K+ + 
Sbjct: 159 TKKEVQETGNSNISNNSKGTDTSVDGTNENLQKYKYSSGLHGVGLSVSNALSIFMKVNVF 218

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLREL 199
           R+  IY +    G +   L V        GT++ + P + IF      N + +++RL +L
Sbjct: 219 RDNKIYNIELEKGKVVKELNVQDCPIKKRGTQIHYKPDNTIFKTNIKHNSECIKNRLHQL 278

Query: 200 SFLNSSVQISLIDKRS---------------------PEPREITMFYKGGIEAFVSYLDR 238
           ++LN  +     D+R+                            + ++GG++A++  L +
Sbjct: 279 AYLNDKLTFYFYDERNSNKGNSDKVSENVENNSYTKLDNYEYEIIKHEGGLDAYMEMLTK 338

Query: 239 HKKPLMQ---SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +K  L +     I I   + NI +DL ++W  + Y+EN+L F NN+   DGGTH+  ++ 
Sbjct: 339 NKTNLFKTNNKVISINCFQKNIHVDLKLKWVTNQYNENILSFVNNVNTIDGGTHVDAMKY 398

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A++R I    +K+   K +  ++ G+  REG T++LSIKM +P F  QTK KL S  ++ 
Sbjct: 399 AISRSINYNSKKNESIK-NFVNIPGEYIREGLTAILSIKMNNPEFEGQTKTKLGSYYLKP 457

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGK 413
           ++ES + + LS   +  P     I  K L A    + A+ ARDL R K     +++ PGK
Sbjct: 458 ILESIIFEKLSEIFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSKNNQYYSTILPGK 517

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER-ARFDKMLSSQ 472
           L DC   D  K+E+F+VEGDSA GSAKQ R+RE QAILPL+GKILNVE+     K+  + 
Sbjct: 518 LVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKKIFENV 577

Query: 473 EIGTLITALGT---------------------GIGQDSFDINKLRYHKIIIMTDADVDGA 511
           E+ +LITA+G                       I +++F  N LRY KIIIMTDADVDG 
Sbjct: 578 ELKSLITAIGLSVNYDNSKTGKSNTNKRNDNKDIKKNNFIENSLRYGKIIIMTDADVDGE 637

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HI  LL+TF +R    +I NG +Y+  PPLY +T  K    +KD                
Sbjct: 638 HICILLITFLYRFQKEIIENGNVYVACPPLYKVTYNKFDNNIKD---------------- 681

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                            + I       K  K     +  + + + +     +     E  
Sbjct: 682 -----------------SVISKFNVTTKASKYIIHTYSDSELNELLALLDMDKSQTLENK 724

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR 691
            +L  +          K E  ++G    +      I  G +     +  +      + + 
Sbjct: 725 NTLKKR----------KKENFFNGQGKLN------ITHGDENNTNFDPQNDQDNSEQNQ- 767

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLW 751
                    ++    L  +  K +I               KG        LGEM A QLW
Sbjct: 768 ------TNPFINNDVLFSSSKKYEIQRF------------KG--------LGEMMADQLW 801

Query: 752 ETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
            TT++P  R L+RV ++DA +A+ L + LMG++ + R++FI +N
Sbjct: 802 STTMDPQVRKLIRVTVSDAIKANTLINSLMGEDSKSRKDFIIKN 845


>gi|126739174|ref|ZP_01754868.1| DNA topoisomerase IV subunit B [Roseobacter sp. SK209-2-6]
 gi|126719791|gb|EBA16499.1| DNA topoisomerase IV subunit B [Roseobacter sp. SK209-2-6]
          Length = 652

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 238/655 (36%), Positives = 348/655 (53%), Gaps = 22/655 (3%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M++++     + +YDA SI++L+GL+ V++RP MYIG TD E  LHHM+ E+LDN++DE+
Sbjct: 1   MANDLLSTPASETYDASSIEVLEGLEPVRQRPGMYIGGTD-ERALHHMVAEILDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I VTL+ D S T+SDNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGHANRIEVTLHSDFSVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ +   ++E  F  G+    +   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGSSVVNALSDSMVVQVAKNKELFEQRFSRGLPLGGVEKIGAAPNKRGTFVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFV 233
               +IF    F    L   +R  ++L S V+I    +   +  P E T  + GG++ ++
Sbjct: 180 HADEEIFGHHRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNETPTEATFHFPGGLKDYL 239

Query: 234 SYL-----DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + +         +P        +   +   ++ A+ W          + N +P  +GGTH
Sbjct: 240 TEVLGKSSIYADQPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  SA+ + I +Y E           +  DD   G  +++S  + DP F  QTK++L 
Sbjct: 300 VAGFWSAILKGIKAYGELVGNK--KAGQITRDDLMAGGCALVSCFIADPAFVGQTKDRLS 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +     +VE+ V D    WL      A  I+  ++         RR    T+RK      
Sbjct: 358 TESASKMVENSVRDHFDNWLAADTKSAGAILDFLILR-AEERLRRRQEKETQRKSATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +D   +ELF+VEGDSAGGS K  R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 417 RLPGKLTDCTSKDRSGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+ EI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 477 GSNAEINDLCEALGVGLG-TKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G    Y  DE   + +L      +           G +   D
Sbjct: 536 IDGGHLYLACPPLFRLTQGAKRVYCLDEAERDKWLEKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFIDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+    D      I   I +  P      +E+ +           + N     +L
Sbjct: 596 LKETTMDPTTRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENAKFVEEL 650



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I    +      +  L     ++     
Sbjct: 504 YDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACPPLFRLTQGAKRVYCLDE 563

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I + R+KGLGEM+A  L ETT++P TR L+RV I +    +  D
Sbjct: 564 AERDKWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPTTRKLIRVTIDEDEPGETGD 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++IQEN+     LD+
Sbjct: 624 LVERLMGKKPELRFQYIQENAKFVEELDV 652


>gi|95020427|gb|ABF50738.1| DNA gyrase subunit B [Mesoplasma grammopterae]
 gi|95020429|gb|ABF50739.1| DNA gyrase subunit B [Mesoplasma grammopterae]
          Length = 553

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/533 (45%), Positives = 343/533 (64%), Gaps = 7/533 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T    GLHH+++E++DN++DE++ G+A+ I +T+  +G   V DNGRGIP  +  + G
Sbjct: 1   GSTSKA-GLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGIQADSG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SA E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ +++KREG I+   F  
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVQVKREGKIHHQIFSG 119

Query: 153 GIL-DNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISL 210
           G      + + G   N+TGT V F P  +IF    +F+Y+T+++++++LS+LN  + I L
Sbjct: 120 GGTQQTEIEIIGET-NETGTIVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIEL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D R  +  E       GI  +V   +  K  +  S   +    D+I +++A+++N  Y 
Sbjct: 179 NDLRIDKHVEYHF--PNGILDYVKEKNETKVKINPSIFYVDNKHDDIEVEVALQYNAEYQ 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN++ F NNI   +GGTH  GLR +L R I  Y EK     K       DD +EG   ++
Sbjct: 237 ENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIV 296

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SI+  DP++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   R 
Sbjct: 297 SIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNANAQKARI 356

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  LD  SLPGKLADC  +DP+ +EL+LVEGDSAGGSAK GR+R  QAI
Sbjct: 357 AAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAI 416

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK+LNVER    +  ++ EI +++TA+GTGI +D  D++KLRY KI+IMTDADVDG
Sbjct: 417 LPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDI-DLSKLRYGKIVIMTDADVDG 475

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           AHIRTLLLTFF+R M  L+  G +YI +PPLY I  GK + Y   +  LE+  
Sbjct: 476 AHIRTLLLTFFYRYMKQLVVEGHVYIAQPPLYKIEAGKKVAYAYSDIELEELK 528



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    S      +V      V    +    
Sbjct: 423 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLL 482

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    + +    +       L  I  G K+        L+ +    F   R   ++
Sbjct: 483 LTFFYRYMKQLVVEGHVY-IAQPPLYKIEAGKKVAYAYSDIELEELKAGDFKDSR--FTI 539

Query: 737 QRYKGLGEMNASQL 750
           QRYKGLGEM+  QL
Sbjct: 540 QRYKGLGEMDPIQL 553


>gi|163733481|ref|ZP_02140924.1| DNA topoisomerase IV, B subunit [Roseobacter litoralis Och 149]
 gi|161393269|gb|EDQ17595.1| DNA topoisomerase IV, B subunit [Roseobacter litoralis Och 149]
          Length = 652

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/650 (35%), Positives = 336/650 (51%), Gaps = 18/650 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S   + + YDA SI++L+GL+ V+KRP MYIG TD E  LHH++ EVLDN++DE++ G+A
Sbjct: 6   SSGHEPTDYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEAVAGHA 64

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             I V L+ D + T+ DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+ SGGL
Sbjct: 65  TRIEVELHEDYAVTIRDNGRGIPVDPHPKFPDKSALEVILCTLHAGGKFSGKAYETSGGL 124

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  + +++ R   ++E  F  G+   P+   G   N  GT VTF   ++
Sbjct: 125 HGVGASVVNALSDSMIVQVARNKQLFEQRFSRGLPLGPVEELGPTQNRRGTTVTFHADAE 184

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVSYLDR 238
           IF    F    L + +R  ++L S V+I           P+E T  + GG+  ++     
Sbjct: 185 IFGAHRFKPARLFNSIRSKAYLFSGVEIRWKSAISDGETPQEATFHFPGGLSDYLRETLG 244

Query: 239 HKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                  +P        +   +   ++ A+ W       +  + N +P  +GGTH++G  
Sbjct: 245 AATTYADNPFAGTVDFKEKFGEPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVAGFW 304

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+ + I +Y E S   K  +  +  +D   G  +++S  + +P F  QTK++L +    
Sbjct: 305 AAILKGIKAYGELSNTKKAAQ--ITREDLTSGGCALVSCFIAEPAFVGQTKDRLSTEAAA 362

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            + E  V D    WL      A  I+  ++         RR    T RK       LPGK
Sbjct: 363 KMTEGAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETARKSATKKLRLPGK 421

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC+ +D   +ELF+VEGDSAGGS K  R R+ QA+LPL+GKILNV  A   K+ ++ E
Sbjct: 422 LTDCTSKDRIGTELFIVEGDSAGGSGKGARDRKTQALLPLKGKILNVLGAASSKLGTNAE 481

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI  LL+TFFF QM  +I  G 
Sbjct: 482 ISDLCEALGCGMG-TKFNLDDLRYEKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGH 540

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI 591
           LY+  PPL+ +T+G    Y   EE   D+L      +           G +   DL+   
Sbjct: 541 LYLACPPLFRLTQGAKRVYCLTEEEKNDWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETT 600

Query: 592 DD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            D      I   I +  P      +E+ +           + N     +L
Sbjct: 601 MDPTTRKLIRVSIDEDIPGETGDLVERLMGKKPELRFQYIQENAKFVEEL 650



 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            + ++      V    +      F F      I +  +      +  L     ++     
Sbjct: 504 YEKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLYLACPPLFRLTQGAKRVYCLTE 563

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
               D +   +G KG I + R+KGLGEM+A  L ETT++P TR L+RV I +    +  D
Sbjct: 564 EEKNDWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPTTRKLIRVSIDEDIPGETGD 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++IQEN+     LD+
Sbjct: 624 LVERLMGKKPELRFQYIQENAKFVEELDV 652


>gi|329850536|ref|ZP_08265381.1| DNA topoisomerase IV, B subunit [Asticcacaulis biprosthecum C19]
 gi|328840851|gb|EGF90422.1| DNA topoisomerase IV, B subunit [Asticcacaulis biprosthecum C19]
          Length = 699

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/646 (37%), Positives = 348/646 (53%), Gaps = 19/646 (2%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EVLDNA+DE++  +A  I V L+
Sbjct: 60  YGASSIEVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVLDNAMDEAVANHAKAIWVELD 118

Query: 70  MDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
            DG  +V D+GRGIP D H +  G SA EVIMT LH+GGKF+ K+Y  SGGLHGVG SVV
Sbjct: 119 ADGYVSVRDDGRGIPVDPHPKYPGKSALEVIMTVLHSGGKFSGKAYATSGGLHGVGASVV 178

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DF 187
           NALS  L++   R+G  ++ +F  G    P+     +    GT++ FLP  +IF     F
Sbjct: 179 NALSERLEVTAWRDGFEWQQNFARGHSLGPIEQIQPSK-KRGTKMRFLPDVEIFGSTAHF 237

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
               L    +  ++L   VQI             P E   ++  G+  +++   +  + L
Sbjct: 238 KPARLYRMTKAKAYLFRGVQIFWKCATSQITDQTPPEDKFYFPNGLADYLAERIKGTEAL 297

Query: 244 MQSPI-RIQGSRDNISIDLAMRW----NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                 R++   D  +++ A+ W     D +   V  + N IP  DGGTH +GLR+ALTR
Sbjct: 298 TDIFSGRVERKDDAGAVEWAVVWSGAGFDDHDSFVQSYCNTIPTPDGGTHEAGLRAALTR 357

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y E +   +     +  +D       V+S+ + +P F  QTK++L SS+   +VE 
Sbjct: 358 SLKTYAEMTGDKRGG--LITAEDVAAYAGIVISVFIRNPEFQGQTKDRLSSSDAARLVER 415

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D    WL   P +A+ +++ +++ +  R   R+ ++  +R        LPGKLADCS
Sbjct: 416 ALADPFDHWLTGSPKQAEKLLQYIIERAEERLKKRKDKE-VQRASATRKLRLPGKLADCS 474

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D   +ELF+VEGDSAGGSAKQGR+R  QAILPLRGKILNV  A  DK+  + E+  L 
Sbjct: 475 RQDAIGTELFIVEGDSAGGSAKQGRNRNTQAILPLRGKILNVASATVDKLRQNSELSDLG 534

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG   G   F    LRY +IIIMTDADVDGAHI +LL+TFF+R MP+++ NG LY+  
Sbjct: 535 LALGVQPGAK-FKEEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPAMVRNGNLYLAL 593

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKI 597
           PPLY ++ GK + Y KD+    + L      ++         G +    L+    D  K 
Sbjct: 594 PPLYRLSHGKEVHYAKDDSHRAEILAKHFKGKKPEIGRFKGLGEMMPAQLKETTMD-PKT 652

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
             L +   P+ ++   +          E         A   A  L+
Sbjct: 653 RTLARVTLPHEEEDIEDLVETLMGRKPELRYRYIQDHAEFAAEDLD 698



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 4/77 (5%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA-DDLFSRLMGDEVEPR 788
           G+K   + R+KGLGEM  +QL ETT++P TR+L RV +    +  +DL   LMG + E R
Sbjct: 624 GKK-PEIGRFKGLGEMMPAQLKETTMDPKTRTLARVTLPHEEEDIEDLVETLMGRKPELR 682

Query: 789 REFIQENSLPSA--LDI 803
             +IQ+++  +A  LD+
Sbjct: 683 YRYIQDHAEFAAEDLDV 699


>gi|323465562|gb|ADX69249.1| DNA gyrase subunit B [Lactobacillus helveticus H10]
          Length = 613

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 263/585 (44%), Positives = 380/585 (64%), Gaps = 7/585 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T  + GLHH+++E++DN+IDE L G+A  I +T+N DGS TV D+GRGIP D+ K
Sbjct: 1   MYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQK 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + G  A E + T LHAGGKF    YKVSGGLHGVG SVVNALS+ L + + R+G  Y + 
Sbjct: 60  KTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFID 119

Query: 150 FINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQ 207
           F +G + + +   G+   +  GT V F P  DIF     F+   L++R+REL+FLN  ++
Sbjct: 120 FDHGRVKDEMKQIGTVPLDQHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLK 179

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           ++  DKR          Y+GGI+ +V++L++ ++ L   PI ++ + + I +++A+++ +
Sbjct: 180 LTFTDKRKDSAETDVYKYEGGIKEYVAFLNKGQEVLFDEPIYVESTYNGIDVEVALQYTN 239

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY   ++ F NNI   +GG H +G ++ALTR +  Y  K+   K    ++ G+D REG T
Sbjct: 240 GYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMT 299

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K P P+F  QTK KL +S+ R+ V+   ++  S +L E+P   + IV+K   A  
Sbjct: 300 AVVSVKHPSPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAER 359

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA+RAR++TR+K  L+IA+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR  
Sbjct: 360 ARTAAKRAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLT 419

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILP+RGKILNVE+A  D++L++QEI +L TALGTG G D FD++K RYHK+IIMTDAD
Sbjct: 420 QAILPIRGKILNVEKASMDRILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDAD 478

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDGAHIRTLLLT F+  M  +I  G++YI +PPLY + +GK ++Y+  +E L DYL +  
Sbjct: 479 VDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQ 538

Query: 568 LSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
            S + +       G +    L          ++ +    P + K 
Sbjct: 539 PSPKPVVQRYKGLGEMDPEQLWET--TMNPENRRLDRVSPEYAKD 581



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 125/369 (33%), Gaps = 35/369 (9%)

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524
              ++            G       +     HK  I+ D D +  G  IR  +      +
Sbjct: 246 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 305

Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570
            PS    G           +  +         +++ +  S+   ++         ++ ++
Sbjct: 306 HPSPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 365

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618
                   K  +   +L   + D    D  I +                ++ + QA++  
Sbjct: 366 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 425

Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              + N E      +    ++ +    +       +  S      L+      V    + 
Sbjct: 426 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 485

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTI--FSIGRKGI 734
                  +      I    +       L  +  G  IK +     L D +       K +
Sbjct: 486 TLLLTLFYNYMRPMIEKGYVY-IARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPV 544

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QRYKGLGEM+  QLWETT+NP+ R L RV    A  AD +F  LMG+EV PRR+FIQ+
Sbjct: 545 -VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRDFIQK 603

Query: 795 NSLPS-ALD 802
           N+     LD
Sbjct: 604 NAKYVENLD 612


>gi|84683525|ref|ZP_01011428.1| DNA topoisomerase IV, B subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668268|gb|EAQ14735.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 650

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 340/653 (52%), Gaps = 20/653 (3%)

Query: 1   MSD--NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MSD     +  YDA SI++L+GL+ V++RP MYIG TD E  LHHM+ E+LDN++DE++ 
Sbjct: 1   MSDLLTNPSDDYDASSIEVLEGLEPVRQRPGMYIGGTD-ERALHHMVAEILDNSMDEAVA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVS 117
           G+A  I V L+ D S TV+DNGRGIP D H +  G SA EVI+  LHAGGKF+ K+Y+ S
Sbjct: 60  GHATRIEVELHGDYSVTVTDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS  L +++ +   ++E  F  G+   P+   G+A N  GT VTF  
Sbjct: 120 GGLHGVGSSVVNALSDSLVVQVAKNKELFEQRFSRGLPLGPVEKVGAAPNRRGTSVTFHA 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFVSY 235
              IF    F    L    R  ++L S V+I           P E T  + GG++ ++  
Sbjct: 180 DDQIFGSHRFKPKRLFTLARSKAYLYSGVEIRWKSAIDDGETPTEATFHFPGGLKDYLKE 239

Query: 236 LDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +                   +   +   ++ A+ W       +  + N +P  +GGTH++
Sbjct: 240 VLGTASTYSDTGFAGKVEFREKFGEPGYVEWAINWTPARDGFIQSYCNTVPTPEGGTHVA 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G  +A+ + I +Y E     K  + +   DD   G  +++S  + DP F  QTK++L + 
Sbjct: 300 GFWAAILKGIKAYGELVGNKKAAQIN--RDDLLTGGCALVSTFIADPAFVGQTKDRLSTE 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
               +VE  V D    WL      A  I+  ++         RR    T+RK       L
Sbjct: 358 AAAKMVEGAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETQRKSATKKLRL 416

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL DCS  + + +E+FLVEGDSAGGSAK GR R+ QA+LPLRGKILNV  A   K+  
Sbjct: 417 PGKLVDCSATNREGTEIFLVEGDSAGGSAKMGRDRKTQALLPLRGKILNVLGAASSKLGQ 476

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           +QEI  L  ALG G+G   F ++ LRY K+IIMTDADVDGAHI  LL+TFFF QM  LI 
Sbjct: 477 NQEINDLCQALGVGMG-IKFRVDDLRYDKVIIMTDADVDGAHIAALLMTFFFSQMRPLID 535

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLR 588
           +G LY+  PPLY +T+G    YV D+   + ++      +           G +   DL+
Sbjct: 536 HGHLYLACPPLYRLTQGAKRLYVADDAEKDAWMAKGLGGKGKIDVQRFKGLGEMDAKDLK 595

Query: 589 NFIDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
               D      I   I +  P      +E+ +           + N     +L
Sbjct: 596 ETTMDPNTRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENARFVEEL 648



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I    +      +  L     ++ +   
Sbjct: 502 YDKVIIMTDADVDGAHIAALLMTFFFSQMRPLIDHGHLYLACPPLYRLTQGAKRLYVADD 561

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I +QR+KGLGEM+A  L ETT++P+TR L+RV I +    +  D
Sbjct: 562 AEKDAWMAKGLGGKGKIDVQRFKGLGEMDAKDLKETTMDPNTRKLIRVTIDEDEPGETGD 621

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++IQEN+     LD+
Sbjct: 622 LVERLMGKKPELRFQYIQENARFVEELDV 650


>gi|254486692|ref|ZP_05099897.1| DNA topoisomerase IV, B subunit [Roseobacter sp. GAI101]
 gi|214043561|gb|EEB84199.1| DNA topoisomerase IV, B subunit [Roseobacter sp. GAI101]
          Length = 653

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/656 (35%), Positives = 336/656 (51%), Gaps = 23/656 (3%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD           YDA SIQ+L+ ++ V+ RP MYIG  D    LHHM+ E++DN++DE
Sbjct: 1   MSDLLSGAQSSGKEYDASSIQVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIIDNSMDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSY 114
           ++ G+A  I + L+ +G  TV DNGRGIPTD H +    SA E+I   L+AGGKF+  SY
Sbjct: 60  AVAGHATWIELELHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + SGGLHGVG SVVNALS  L++ + R   +Y M F  GI    L   G+A N  GT VT
Sbjct: 120 ETSGGLHGVGSSVVNALSDHLRVEVARNRELYAMEFSRGIPQGKLEKIGAAPNRRGTSVT 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI--DKRSPEPREITMFYKGGIEAF 232
           F P ++IF         L    R  ++L S V+I      K    P E T  + GG+  +
Sbjct: 180 FHPDAEIFGNLTLKPARLFAMARSKAYLFSGVEIRWKTSQKDGDTPSEATFHFPGGLSDY 239

Query: 233 VSYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           ++   +       +P        +       ++ A+ W       +  + N IP  +GGT
Sbjct: 240 LNETLKGSTSYADAPFGGMVDFKEKFGVPGKVEWAVNWTPSRDGFIQSYCNTIPTPEGGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G  +A+ + + +Y E          ++  +D   G  +++S  + +P F  QTK++L
Sbjct: 300 HEAGFWAAILKGVKAYGELVGNK--KAGTITREDLITGGCALVSCFIREPEFVGQTKDRL 357

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            + + + +VE+ V D    WL  +   A  I+  ++         RR    T RK     
Sbjct: 358 ATVDAQRMVENAVRDHFDNWLASNTKSAGAILDFLVLR-AEERLRRRQEKETARKTATKK 416

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKL DC+ ++ + +ELF+VEGDSAGGS K  R+R NQA+LPL+GKILNV  A   K
Sbjct: 417 LRLPGKLTDCTSKNREGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASGK 476

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           + ++ EI  L  ALG G+G   F ++ LRY KIIIMTDADVDGAHI  LL+TFF+ QM  
Sbjct: 477 LNTNAEINDLCEALGVGMGSK-FVLDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRP 535

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI--ELFCDSKGVISKN 585
           +I  G LY+  PPLY +T+G    YV D+   + +L      +           G +   
Sbjct: 536 MIDAGHLYLACPPLYRLTQGAKRVYVSDDAEKDLWLEKGLGGKGKIDLQRFKGLGEMDAK 595

Query: 586 DLRNFIDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           DL+    D      I   +++  P      +E+ +           + N     +L
Sbjct: 596 DLKETTMDPSTRKLIRVTVQEDTPGETGDLVERLMGKKPELRYQYIQENAQFVEEL 651



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F +      I +  +      +  L     ++ ++  
Sbjct: 505 YDKIIIMTDADVDGAHIAALLMTFFYTQMRPMIDAGHLYLACPPLYRLTQGAKRVYVSDD 564

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI-TDA-SQADD 775
                 +   +G KG I +QR+KGLGEM+A  L ETT++P TR L+RV +  D   +  D
Sbjct: 565 AEKDLWLEKGLGGKGKIDLQRFKGLGEMDAKDLKETTMDPSTRKLIRVTVQEDTPGETGD 624

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++IQEN+     LD+
Sbjct: 625 LVERLMGKKPELRYQYIQENAQFVEELDV 653


>gi|307105660|gb|EFN53908.1| hypothetical protein CHLNCDRAFT_48978 [Chlorella variabilis]
          Length = 663

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 256/611 (41%), Positives = 346/611 (56%), Gaps = 46/611 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SY A  IQ+L+GL+ V+KRP MYIG T G+ GLHH++YE+LDNAIDE   G+A  + V
Sbjct: 17  STSYGAQQIQVLQGLEPVRKRPGMYIGST-GQRGLHHLVYEILDNAIDEVQAGFATEVHV 75

Query: 67  TLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGV 123
            LN+D G  T+SDNGRGIPTD+H   G SA E ++T LHAGGKF  +   Y VSGGLHGV
Sbjct: 76  ELNLDTGWVTISDNGRGIPTDVHPVTGKSALETVLTVLHAGGKFGGDSSGYSVSGGLHGV 135

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDI 181
           G+SVVNALS  L++ + R  + +   F  G+  +PLV   +A      GT V F+    I
Sbjct: 136 GLSVVNALSDELEVSVWRGRSQFSQRFSRGVAQSPLVEAPAAAGAPKRGTRVRFIYDDTI 195

Query: 182 FSVQD--------------FNYDTLQHRLRELSFLNSSVQISLID---------KRSPEP 218
           FS                 F+ DT++ RLREL+FLNS   I                 EP
Sbjct: 196 FSKTHTSPRPPLLPHCSATFDPDTIRSRLRELAFLNSRATIYFRAGNGSSNGAAAAEAEP 255

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y GG+  +V +L+R K P+ +     +           +R  D     ++ F N
Sbjct: 256 DWEVFHYSGGLAEYVRFLNRDKVPIHEPLCFSKQ-------ASGLRRGD----TIIGFVN 304

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           +I   DGGTH+ G ++ALTR + S   K    K+ + ++ G+  REG  +V+S+K+P+P 
Sbjct: 305 SIKTIDGGTHIDGTKAALTRTVNSLGRKLKAIKEGESNLAGEYIREGLGAVVSVKVPNPE 364

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK +L + EVR +VE  V+  +   LE  P     I+ K + A    +AA++AR+L
Sbjct: 365 FEGQTKTRLGNPEVRRIVEGVVSSAVGEALEMEPTTFNTILAKAMQAFKAAEAAKKAREL 424

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            RRK VL  ++LPGKLADCS  +  ++E+FLVEGDSAGGS KQ R R  QA+LPLRGKIL
Sbjct: 425 VRRKSVLTKSTLPGKLADCSSTNRAETEIFLVEGDSAGGSTKQARDRRYQAVLPLRGKIL 484

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N       K+  + EI  L   +G G+G    D   LRY KIII+TDADVDGAHIRTLLL
Sbjct: 485 N----DDSKLYKNNEIANL--IVGLGLGLKGEDAVNLRYGKIIILTDADVDGAHIRTLLL 538

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TF FR   ++   G +Y+  PPLY +  G+  QY   EE L+  L   +           
Sbjct: 539 TFLFRYQRAIFEKGHVYVGVPPLYKLDVGRRAQYCYTEEELKAALAELAPCSYTMQRFKG 598

Query: 579 KGVISKNDLRN 589
            G +    L +
Sbjct: 599 LGEMMPEQLWS 609



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K           ++      V    +      F F  +        +      +  L   
Sbjct: 508 KGEDAVNLRYGKIIILTDADVDGAHIRTLLLTFLFRYQRAIFEKGHVYVGVPPLYKLDVG 567

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
                      L   +  +     +MQR+KGLGEM   QLW TTLNP+TR+L ++ I DA
Sbjct: 568 RRAQYCYTEEELKAALAELAPCSYTMQRFKGLGEMMPEQLWSTTLNPETRTLRKLTIDDA 627

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN----SLPSALDI 803
           ++A  +F+ LMGD+V PRRE I+ +    +L   LDI
Sbjct: 628 AEASHMFALLMGDKVGPRRELIERHGSRLALE-ELDI 663


>gi|94957782|gb|ABF47141.1| DNA gyrase subunit B [Mesoplasma tabanidae]
          Length = 552

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/526 (44%), Positives = 340/526 (64%), Gaps = 6/526 (1%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH+++E++DN++DE++ G+A+ I +T+  +G   V DNGRGIP  +  + G SA E++
Sbjct: 6   GLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGIQADSGKSALELV 65

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNP 158
            T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ +++KREG I+   F  G      
Sbjct: 66  FTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVQVKREGKIHHQVFSGGGTQQTE 125

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + + G    +TGT V F P  +IF    +F+Y+T+++++++LS+LN  + I L D R  +
Sbjct: 126 IEIIGETS-ETGTIVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELNDLRIDK 184

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
             E       GI  +V   +  K  +  S   +    ++I +++A+++N  Y EN++ F 
Sbjct: 185 HVEYHF--PNGILDYVKEKNETKVKINPSIFYVDDKHEDIEVEVALQYNAEYQENLITFV 242

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNI   +GGTH  GLR +L R I  Y EK     K       DD +EG   ++SI+  DP
Sbjct: 243 NNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIVSIRHTDP 302

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           ++  QTK KL + + +  V++ V +    +L + P +AK I+ K  +A   R AA+RAR+
Sbjct: 303 QYEGQTKTKLANPDAKKAVDAVVGEAFEEFLLKSPEDAKAIIDKNANAQKARIAAQRARE 362

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
            TRRK  LD  SLPGKLADC  +DP+ +EL+LVEGDSAGGSAK GR+R  QAILPLRGK+
Sbjct: 363 ETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAILPLRGKV 422

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVER    +  ++ EI +++TA+GTGI +D  D+ KLRY KI+IMTDADVDGAHIRTLL
Sbjct: 423 LNVERVAEVRAFANNEIKSIVTAIGTGIKEDI-DLTKLRYGKIVIMTDADVDGAHIRTLL 481

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           LTFF+R M  L+ +G +YI +PPLY I  GK + Y   +  L++  
Sbjct: 482 LTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDAELDELK 527



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E+     +++ + +  I    ++    +      +V      V    +    
Sbjct: 422 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLTKLRYGKIVIMTDADVDGAHIRTLL 481

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736
             F +    + +    +       L  I  G K+      + LD +    F   R   ++
Sbjct: 482 LTFFYRYMKQLVVDGHVY-IAQPPLYKIEAGKKVAYAYSDAELDELKAGDFKDSR--FTI 538

Query: 737 QRYKGLGEMNASQL 750
           QRYKGLGEM+  QL
Sbjct: 539 QRYKGLGEMDPIQL 552


>gi|34305633|gb|AAQ63623.1| Tmp4 [Bifidobacterium breve UCC2003]
          Length = 592

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/549 (44%), Positives = 343/549 (62%), Gaps = 25/549 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 46  ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 105 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  ++++     PL      +    TGT VTF     
Sbjct: 165 VGISVVNALSTHVDIEVRRQGFHWTQTYVDQHPVAPLKQGEPMAEDESTGTSVTFWADPK 224

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLID-----------------KRSPEPREITM 223
           IF    ++++TL+ R ++++FLN  +++SL D                 +   + + +T 
Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKLSLTDERVTDQAGDEVAGDAEGEPGEKHQTVTY 284

Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V Y    R   P+ +  I  +    +  IS +LAM+W   Y E V  F N 
Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K    ++ GDD REG T+V+S+K+ +P+F
Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKAILKDKDENLSGDDVREGLTAVISVKLTNPQF 404

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE ++ V+  + D L  W + HP EAK I++K ++AS  R AA++AR+ T
Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 464

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   +P++ ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 465 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT
Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583

Query: 520 FFFRQMPSL 528
            FFR M  +
Sbjct: 584 LFFRYMRPM 592


>gi|297562245|ref|YP_003681219.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846693|gb|ADH68713.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 701

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/675 (35%), Positives = 343/675 (50%), Gaps = 56/675 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I VT
Sbjct: 12  EDYSARHLSVLEGLEAVRKRPGMYIGSTDS-RGLTHCMWEIIDNSVDEALGGFCTRIDVT 70

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +VSD+GRGIP D   + G+S  E++MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 71  LHSDGSVSVSDDGRGIPVDAEPKSGLSGVELVMTKLHAGGKFGSGSYTASGGLHGVGASV 130

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVVT-GSAGNDTGTE 172
           VNALSS + + + R+G  + +SF  GI                + L      A   TGT 
Sbjct: 131 VNALSSRVDVEVDRQGRTHAISFRRGIPGRFAGSGPDAEFTPVSGLEQVRKVAQKITGTR 190

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGI 229
           + F P   IF    D   + L  R R+ +FL   + +S+ D+R       E    + GGI
Sbjct: 191 IRFWPDMQIFLKDADIAREALLDRARQTAFLVPGLTLSVRDERVEGEPAHEEEFRFDGGI 250

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNIS---------------------IDLAMRWNDG 268
             F           +   +RIQGS +                        +D+A+RW  G
Sbjct: 251 GEF--CTFLAPDEPVSDVLRIQGSGNFTETVPVLDDAGHMVPADVERRLDVDVALRWGTG 308

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   V  F N I    GGTH++G   AL R I   +  +   +     V  DD +EG T+
Sbjct: 309 YDTTVRSFVNVIATPKGGTHINGFERALVRVINEQLRTTKLLRNSDDPVTKDDTQEGLTA 368

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLD 384
           V+++++P+P+F  QTKE L +S    +V   V   L  +L       K     +++KV+ 
Sbjct: 369 VVTVRLPEPQFEGQTKEILGTSAATRIVSQVVGKELREFLTSTKKVEKARARSVLEKVVG 428

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ R+  RRK  L+ ++LP KL DC     + SELF+VEGDSA G+AK  R 
Sbjct: 429 AAKARLAARQQRETQRRKTALENSALPAKLVDCRSEGLEHSELFIVEGDSALGTAKLARD 488

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E   ++  +G G G+  FDI+  RY +II+M 
Sbjct: 489 SEFQALLPIRGKILNVQKSSVADMLKNAECAAILQVVGAGSGRT-FDIDAARYGRIILMA 547

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT-------RGKSLQYVKDEE 557
           DADVDGAHIR LLLT  +R M  ++  G +Y   PPL+ I        RG   +      
Sbjct: 548 DADVDGAHIRCLLLTLIYRYMRPMLEAGRVYAAVPPLHRIELTNTRRKRGSKPEDRYVYT 607

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
             +  L    L  E       + V     L   +D     +  +   Y    +  +EQA 
Sbjct: 608 YSDAELSRTLLDLEKRKISWKEPVQRYKGLGE-MDADQLAETTMDPRYRTLRRIRVEQAE 666

Query: 618 IS-GVFNCESDQEIN 631
            +  VFN     E+ 
Sbjct: 667 EASSVFNLLMGNEVA 681



 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 6/98 (6%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
               +       L  T+  + ++ IS    +QRYKGLGEM+A QL ETT++P  R+L R+
Sbjct: 601 EDRYVYTYSDAELSRTLLDLEKRKISWKEPVQRYKGLGEMDADQLAETTMDPRYRTLRRI 660

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           ++  A +A  +F+ LMG+EV PRR FIQ+ +    LD+
Sbjct: 661 RVEQAEEASSVFNLLMGNEVAPRRRFIQQGA--QELDV 696


>gi|34304599|gb|AAQ63405.1| DNA gyrase subunit B [Mesoplasma seiffertii]
          Length = 531

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/534 (45%), Positives = 347/534 (64%), Gaps = 6/534 (1%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
           +GLHH+++E+LDN+IDE++ G A+ I+VT+  +G   V DNGRGIP  + ++ G SA E+
Sbjct: 1   TGLHHLVWEILDNSIDEAMAGEANTISVTITKEGEVIVEDNGRGIPVGIQEDSGKSALEL 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDN 157
           + T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ + + R+GN+Y   F + G    
Sbjct: 61  VFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVLVMRDGNVYHQIFSDGGTKQT 120

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            L + G   +  GT V F P  +IF     F+Y+T+++++++LS+LN  ++I+L D+R  
Sbjct: 121 ELEILG-TTDKRGTIVRFKPDPEIFQETVTFDYETIRNKVKQLSYLNKGIKINLTDQRID 179

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +  E       GI  +V   +  K  +  S   + G  D+I +++A+++N  Y EN++ F
Sbjct: 180 KTVEYHF--PNGILDYVKEKNETKSKINPSVYYVDGKHDDIEVEVALQYNAEYQENLITF 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI   +GG+H  GLR ALTR I  Y EK     K       DD +EG   ++SI+  D
Sbjct: 238 VNNINTHEGGSHEDGLRQALTRVINRYSEKVAKGTKAPSKYSWDDIKEGMVCIVSIRHTD 297

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P++  QTK KL + + +  V++ V D    +L + P +AK I+ K  +A   R AA+RAR
Sbjct: 298 PQYEGQTKTKLANPDAKKAVDAVVGDSFEEFLLKSPEDAKAILDKNANAQKARIAAQRAR 357

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           + TRRK  LD  SLPGKLADC  +D   +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK
Sbjct: 358 EETRRKSALDTFSLPGKLADCESKDSTIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGK 417

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           +LNVER    +  ++ EI +++TA+GTGI +D  D+ KLRY KI+IMTDADVDGAHIRTL
Sbjct: 418 VLNVERVAEARAFANNEIKSIVTAIGTGIKEDL-DLTKLRYGKIVIMTDADVDGAHIRTL 476

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           LLTFF+R M  L+ NG ++I +PPLY I  GK + Y   +  L++   N+  + 
Sbjct: 477 LLTFFYRYMKDLVKNGNIFIAQPPLYKIEAGKKVAYAYSDAELDELKENEFSNS 530


>gi|294660440|ref|NP_853202.2| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str.
           R(low)]
 gi|33860191|sp|Q59526|PARE_MYCGA RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B; Short=TopIIB
 gi|284812100|gb|AAP56770.2| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930684|gb|ADC30623.1| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str.
           R(high)]
          Length = 633

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/595 (38%), Positives = 352/595 (59%), Gaps = 12/595 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y+   I++LKGL+ V+KRP MYIG TD   GLHH+++E+ DNA+DE+L G A+ I V 
Sbjct: 3   SNYNEKHIKVLKGLEPVRKRPGMYIGSTD-TRGLHHLVWELFDNAVDEALNGSANKIEVV 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
              DGS  V+DNGRGIP   +    +S  + + T LHAGGKF+ ++YKVSGGLHGVG SV
Sbjct: 62  HKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L + + R+G +YE  + + G +  PL   G++    GT V F P   IF    
Sbjct: 122 VNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNST-KHGTIVQFWPDPTIFKNIQ 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN   ++ RL E SFL   ++I  +D+ +PE  + T   K GI  ++ Y++ +KK  +  
Sbjct: 181 FNPYMIKERLHESSFLFKGLKIVFVDENNPELSQ-TFIAKDGILEYLKYVNENKKS-ISK 238

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G  + I +D   ++ D   E ++ F N++   +GG+H +G + A+   I  Y +K
Sbjct: 239 IIPFKGDYEKIVVDGCFQYTDNESELIISFANSVKTSEGGSHENGFKQAMLETINDYSKK 298

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364
                   +     D +EG + VLS+++P+    +  QTK KL + EV+  V   +   L
Sbjct: 299 YKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKILTQQL 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDPK 423
             +LEE+  +AK ++++       ++AA++A++ T++ K       L GKL    +++P 
Sbjct: 359 FYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTPAQQKNPL 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++E+FLVEGDSAGG+AK GR +  QAILPLRGK++NVE++R   +L ++EI ++I+ LG 
Sbjct: 419 QNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSIISCLGC 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG + F+I  L+YHKIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI   PLY 
Sbjct: 479 GIGNN-FNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALAPLYK 537

Query: 544 I--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           I         +  D+  L++       S E++ +     + S+      +D + +
Sbjct: 538 ISAKNSNKSAFAWDDYQLDELRTKYG-SYEVQRYKGLGEMNSEQLWTTTMDPSKR 591



 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
             +QRYKGLGEMN+ QLW TT++P  R L++V I +A+QA+   S LMGD+   R+ +I 
Sbjct: 565 YEVQRYKGLGEMNSEQLWTTTMDPSKRQLIQVSIQNAAQAERKVSILMGDDASIRKNWIN 624

Query: 794 EN 795
           EN
Sbjct: 625 EN 626


>gi|294790228|ref|ZP_06755386.1| DNA gyrase, B subunit [Scardovia inopinata F0304]
 gi|294458125|gb|EFG26478.1| DNA gyrase, B subunit [Scardovia inopinata F0304]
          Length = 703

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 257/638 (40%), Positives = 365/638 (57%), Gaps = 26/638 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D ++   YDA  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 37  DEMKPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 95

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+       V D+GRGIP D    EG S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 96  HIEVTILSGNGIQVVDDGRGIPVDEVPGEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHG 155

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180
           VG+SVVNALS+ + + ++R+G  +  +++N     PL      + G  TGT VTF     
Sbjct: 156 VGISVVNALSTRVDVEVRRQGYHWTQTYVNQKPLAPLKQGKPMNEGETTGTSVTFWADPA 215

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----------------PREITM 223
           IF   D++++TL+ R ++++FLN  ++ISL D RS +                  R +T 
Sbjct: 216 IFDTTDYDFETLRSRFQQMAFLNKGLKISLTDLRSIDEAGDEVASDGDNVVEELHRTVTY 275

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRI----QGSRDNISIDLAMRWNDGYHENVLCFTNN 279
            Y  GI+ +V+YL + K         I    + +   IS ++AM+W   Y E+V  F N 
Sbjct: 276 QYVNGIKDYVNYLVKAKNANPIENDIIDIDAEDTHQGISAEIAMQWTSAYSESVHTFANT 335

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K+   ++ GDD REG  +V+S+K+  P+F
Sbjct: 336 ISTTEGGTHEEGFRAALTGLVNRYARDKGILKEKDDNLSGDDVREGLVAVVSVKLTVPQF 395

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++  ++ V+  + + ++ W + HP EAK I++K ++A+  R AA++AR+ T
Sbjct: 396 EGQTKTKLGNAIAKTFVQRVMTERMTDWFDAHPSEAKSIIQKGMEAARARLAAKKAREST 455

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK + + A +P KL DC   DP + ELF+VEGDSAGGSA QGR+   QAILPLRGKILN
Sbjct: 456 RRKSIFESAGMPDKLKDCQSSDPSECELFIVEGDSAGGSAIQGRNPLTQAILPLRGKILN 515

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            ERA  D+M+ S  I +LITA+G G G++ FDI+K+RYHKIIIM DADVDGAHI TL LT
Sbjct: 516 TERASLDRMMKSDTIESLITAIGGGYGEE-FDISKVRYHKIIIMADADVDGAHIATLNLT 574

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578
            FFR M  +I  G++Y+  PPLY +   K    +V  +   +  L             + 
Sbjct: 575 LFFRYMRPMITEGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLEEGRSKGRQLPKGEG 634

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
                      + +                      QA
Sbjct: 635 IQRYKGLGEMTYQELWETTMDPDHRILKQIHIDDAAQA 672



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D +   GR       KG  +QRYKGLGEM   +LWETT++PD R L ++ I DA+QAD+ 
Sbjct: 616 DRVLEEGRSKGRQLPKGEGIQRYKGLGEMTYQELWETTMDPDHRILKQIHIDDAAQADET 675

Query: 777 FSRLMGDEVEPRREFIQENSLPS 799
           FS LMG+EVEPRR FIQ N+  +
Sbjct: 676 FSMLMGEEVEPRRLFIQRNAHDA 698


>gi|99081581|ref|YP_613735.1| DNA topoisomerase IV subunit B [Ruegeria sp. TM1040]
 gi|99037861|gb|ABF64473.1| DNA topoisomerase IV B subunit [Ruegeria sp. TM1040]
          Length = 669

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/655 (36%), Positives = 337/655 (51%), Gaps = 22/655 (3%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D++     + +YDA SI++L+GL+ V++RP MYIG TD E  LHHM+ E+LDN++DE+
Sbjct: 18  MADDLLSPSSSDTYDASSIEVLEGLEPVRQRPGMYIGGTD-ERALHHMVAEILDNSMDEA 76

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I V L+ D S TV DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+
Sbjct: 77  VAGHANRIEVELHADYSLTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQ 136

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  L +++ +   ++E  F  G     +   G+A N  GT VTF
Sbjct: 137 TSGGLHGVGSSVVNALSDSLVVQVAKNKELFEQRFSRGKPLGGVEKIGAAPNRRGTTVTF 196

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
                IF    F    L   +R  ++L S V+I           P+E T  + GG+  ++
Sbjct: 197 HADEQIFGSHRFKPARLFKLVRSKAYLFSGVEIRWKSAIDDGETPQEATFHFPGGLRDYL 256

Query: 234 SYLDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + +                   +   +   ++ A+ W          + N +P  +GGTH
Sbjct: 257 TEVLGKSSVYADAPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTH 316

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  SA+ + I +Y E           +  DD   G  +++S  + DP F  QTK++L 
Sbjct: 317 VAGFWSAILKGIKAYGELVGNK--KAGQITRDDLMAGGCALVSCFIADPAFVGQTKDRLS 374

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +     +VE+ V D    WL      A  I+  ++         RR    T RK      
Sbjct: 375 TEAAAKMVENSVRDHFDNWLAADTKSAGAILDFLILR-AEERLRRRQEKETARKSATKKL 433

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +D   +ELF+VEGDSAGGS K  R+RE QA+LPL+GKILNV  A   K+
Sbjct: 434 RLPGKLTDCTSKDRSGTELFIVEGDSAGGSGKGARNREYQALLPLKGKILNVLGAASGKL 493

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+ EI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 494 TSNAEIRDLCEALGVGLG-TKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPL 552

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G    Y  DE   + ++      +           G +   D
Sbjct: 553 IDGGHLYLACPPLFRLTQGAKRVYCLDEAERDMWMEKGLGGKGKIDVSRFKGLGEMDAKD 612

Query: 587 LRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+           I   I +  P      +E+ +           + N     +L
Sbjct: 613 LKETTMDPKTRKLIRVTIDEDEPGETSDLVERLMGKKPELRFQYIQENAKFVEEL 667



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I    +      +  L     ++     
Sbjct: 521 YDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACPPLFRLTQGAKRVYCLDE 580

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I + R+KGLGEM+A  L ETT++P TR L+RV I +    +  D
Sbjct: 581 AERDMWMEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPKTRKLIRVTIDEDEPGETSD 640

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++IQEN+     LD+
Sbjct: 641 LVERLMGKKPELRFQYIQENAKFVEELDV 669


>gi|121602566|ref|YP_989184.1| DNA topoisomerase IV subunit B [Bartonella bacilliformis KC583]
 gi|4033401|sp|P94281|GYRB_BARBK RecName: Full=DNA gyrase subunit B
 gi|1766064|gb|AAC71079.1| GyrB [Bartonella bacilliformis]
 gi|120614743|gb|ABM45344.1| DNA topoisomerase IV, B subunit [Bartonella bacilliformis KC583]
          Length = 692

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/649 (37%), Positives = 361/649 (55%), Gaps = 21/649 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            ++S+Y+A SI+IL+GL+ V+ RP MYIG TD    LHH+  E++DNA+DE++ GYAD+I
Sbjct: 48  KEDSTYNASSIRILEGLEPVRLRPGMYIGGTDS-KALHHLFSEIIDNAMDEAVAGYADLI 106

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
            +TL+ +   TV+DNGRGIP + H +    S  EVIMT LH+GGKF+ K+Y+ SGGLHGV
Sbjct: 107 DITLDSNNYLTVTDNGRGIPIENHPQIPDKSTLEVIMTHLHSGGKFDGKAYQTSGGLHGV 166

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G+SVVNALS  +++ + RE  +Y   F  GI  + L   G   N  GT V F P S IF 
Sbjct: 167 GISVVNALSDDMEVEVARERKLYRQRFSRGIPQSGLEELGDVYNRRGTRVCFHPDSQIFG 226

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYL 236
               F+ + +    R  ++L + V+I               P +   ++  G++ ++S  
Sbjct: 227 ENTAFDPEKIYKIARSKAYLFNGVKIRWNCDPAALKDAKNIPEKDVFYFPDGLKDYLSLS 286

Query: 237 DRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            ++K  +       +  +   + S++ A+ W++G    +  + N IP ++GGTH +GLR 
Sbjct: 287 LKNKHLVTAEIFSGKTQQLSGHGSVEWAIAWHNG-DAYIQSYCNTIPTEEGGTHETGLRQ 345

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            L R + +Y E     +     +  DD       +LS+ + DP+F  QTK++L ++E + 
Sbjct: 346 TLLRGLKAYAELIGNKRAS--IITSDDVMASTVVMLSVFIKDPQFVGQTKDRLATTEAQR 403

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE+ + D    WL   P EA  ++  V++ +  R   R+ R+   RK  +    LPGKL
Sbjct: 404 IVENAIRDPFDHWLANSPHEATKLLNWVIERAEERLKRRQDRE-INRKTAVRKLRLPGKL 462

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS+     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +KM SSQ I
Sbjct: 463 ADCSQNSAAGAELFIVEGDSAGGSAKQARNRTNQAILPLRGKILNVASAAREKMSSSQTI 522

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             LI ALG G  +  +    LRY +IIIMTDADVDGAHI +LL+TFFF+++P LI  G L
Sbjct: 523 ADLILALGCGT-RSKYREEDLRYERIIIMTDADVDGAHIASLLITFFFQEIPDLIRAGHL 581

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI- 591
           Y+  PPLY I++G  + Y +D+   ++ L  +   +           G +    L+    
Sbjct: 582 YLAVPPLYRISQGGKVAYARDDSHKDELLKTEFTGKGKIEIGRFKGLGEMRAEQLKETTM 641

Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                  +   I  F     K  ++  + +         + + + A+ L
Sbjct: 642 NPKKRTLLRVSIDTFEMQETKETVQNLMGTKPEERFRFIQESSTFANNL 690



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 120/334 (35%), Gaps = 38/334 (11%)

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEE 557
           I+T  DV  +   T+++   F + P  +      +       I     R     ++ +  
Sbjct: 365 IITSDDVMAS---TVVMLSVFIKDPQFVGQTKDRLATTEAQRIVENAIRDPFDHWLANSP 421

Query: 558 SLEDYLINQSLSEEIELFCD-SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
                L+N  +    E         I++      +    K+    ++      + FI + 
Sbjct: 422 HEATKLLNWVIERAEERLKRRQDREINRKTAVRKLRLPGKLADCSQN-SAAGAELFIVEG 480

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEK----------------SWHGSINNS 660
             +G    ++    N ++       LN  +   EK                         
Sbjct: 481 DSAGGSAKQARNRTNQAILPLRGKILNVASAAREKMSSSQTIADLILALGCGTRSKYREE 540

Query: 661 DILVKRIARGVQEQFVLEGSSIFS-----FGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
           D+  +RI   +     ++G+ I S     F  +   +         +  L  I  G K+ 
Sbjct: 541 DLRYERII--IMTDADVDGAHIASLLITFFFQEIPDLIRAGHLYLAVPPLYRISQGGKVA 598

Query: 716 ITGPCSLLDTIFSI---GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DA 770
                S  D +      G+  I + R+KGLGEM A QL ETT+NP  R+LLRV I   + 
Sbjct: 599 YARDDSHKDELLKTEFTGKGKIEIGRFKGLGEMRAEQLKETTMNPKKRTLLRVSIDTFEM 658

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +  +    LMG + E R  FIQE+S  +  LDI
Sbjct: 659 QETKETVQNLMGTKPEERFRFIQESSTFANNLDI 692


>gi|296447781|ref|ZP_06889695.1| DNA topoisomerase IV, B subunit [Methylosinus trichosporium OB3b]
 gi|296254700|gb|EFH01813.1| DNA topoisomerase IV, B subunit [Methylosinus trichosporium OB3b]
          Length = 672

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/624 (37%), Positives = 331/624 (53%), Gaps = 19/624 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            YDA SI++L+GL+ V++RP MYIG    E+ +HH+  EVLDN++DE++ G+A  I V+L
Sbjct: 30  EYDAASIEVLEGLEPVRRRPGMYIGG-KDEAAMHHLFAEVLDNSMDEAVAGHASFIEVSL 88

Query: 69  NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
             DG  TV DNGRGIP   H +    SA EV+MT LHAGGKF+  +Y+ SGGLHGVGVSV
Sbjct: 89  EPDGWLTVIDNGRGIPVGPHPKFPKKSALEVVMTMLHAGGKFDSGAYQTSGGLHGVGVSV 148

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186
           VNALS  L++ + +   +Y   F  G+    L   G   N  GT++ F P ++IF +   
Sbjct: 149 VNALSERLEVEVAQNQQLYRQIFSRGLPQGKLEELGRIANRRGTKIRFKPDAEIFGAATH 208

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDRHK 240
           +    L    R  ++L   V+I            S  P E  + + GG+  +++     K
Sbjct: 209 WRPARLFRMARSKAYLFGGVEIRWRCAPALIEPGSDVPAEAVLRFPGGLRDYLARETEGK 268

Query: 241 K--PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                     ++Q    + S++ A+ W          + N IP  DGGTH +G R AL R
Sbjct: 269 DLVADQPFVGKVQREGGHGSLEWAIAWFTHEDGFSHSYCNTIPTPDGGTHEAGFRLALLR 328

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E+   +K+    +  DD      +++S+ + +P F  Q K +L++ E   VVE+
Sbjct: 329 GLKDHAERIGQAKRA-ALLTADDLMGQSAAMISVFIREPEFQGQNKTRLMNVEASRVVEN 387

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D    WL   P +A  ++   ++        RRA     RK       LPGKLADC+
Sbjct: 388 TVRDAFDHWLAGAPSQATKLLDFAVER-AEERLRRRAEKEQARKSPTRKLRLPGKLADCT 446

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
               + SELF+VEGDSAGGSAK  R R +QA+LPLRGKILNV  A  +K  ++Q++  L 
Sbjct: 447 NTSAQGSELFIVEGDSAGGSAKAARDRASQAVLPLRGKILNVASAGKEKFAANQQLADLA 506

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG G G   +    LRY KII+MTDADVDGAHI +LL+TFFFRQMP LI  G LY+  
Sbjct: 507 QALGCGSG-SHYRDEDLRYDKIIVMTDADVDGAHIASLLITFFFRQMPKLIDGGHLYLAV 565

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDDALK 596
           PPLY +T+G    Y +D+   ++ +      +           G +    L+    DA K
Sbjct: 566 PPLYKLTQGAKTVYARDDRHRDELVKKVLTGKGKIETSRFKGLGEMMPAQLKETTMDAKK 625

Query: 597 ---IDKLIKDFYPNHDKTFIEQAV 617
              +  +I           +E+ +
Sbjct: 626 RTLLKVVIAGEEREETADCVERLM 649



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S  +   +   +LA+    +   S   +       D ++      V    +    
Sbjct: 485 ILNVASAGKEKFAANQQLADLAQALGCGSGSHYRDEDLRYDKIIVMTDADVDGAHIASLL 544

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F F    K I    +      +  L      +          L+  + + G+  I   
Sbjct: 545 ITFFFRQMPKLIDGGHLYLAVPPLYKLTQGAKTVYARDDRHRDELVKKVLT-GKGKIETS 603

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++   R+LL+V I   +  +  D   RLMG + E R  FIQE 
Sbjct: 604 RFKGLGEMMPAQLKETTMDAKKRTLLKVVIAGEEREETADCVERLMGTKPEARFAFIQER 663

Query: 796 SLPS-ALDI 803
           +  +  LD+
Sbjct: 664 APFATELDV 672


>gi|19909553|dbj|BAB86972.1| DNA gyrase subunit B [Leptolyngbya boryana IAM M-101]
          Length = 546

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 264/524 (50%), Positives = 365/524 (69%), Gaps = 2/524 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN++DE+L GY   I +++N DGS TV+D+GRGIPT +H + G SA E +
Sbjct: 1   GLHHLVYEVVDNSVDEALAGYCKAIDISINADGSVTVTDDGRGIPTGIHPKTGKSALETV 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF    YKVSGGLHGVG+SVVNALS W+++ + RE  ++   F  GI    L
Sbjct: 61  MTILHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVTVWREKKVHLQRFERGIAMGEL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
            V       TGT VTFLP + IF     F+Y TL  RLREL++LN  V+I   D R    
Sbjct: 121 QVEPYPQARTGTSVTFLPDASIFTETTKFDYTTLSGRLRELAYLNGGVRIKFADHREGSE 180

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFT 277
           RE   FY+GGI  ++SY++R K+PL +  I + G R+ I +++A++W  D Y++N++ F 
Sbjct: 181 REDVYFYEGGIREYISYMNREKQPLHEEVIFVSGERNGIQVEVALQWCSDAYNDNIIGFA 240

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G++ REG T+V+S+K+PDP
Sbjct: 241 NNIRTVDGGTHLEGLKAVLTRTLNTIARKRNKIKENESNLAGENIREGLTAVISVKVPDP 300

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
            F  QTK KL ++EVR +V+S V + L+ +LE  P  +  I++K + A    +AAR AR+
Sbjct: 301 EFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPNVSDAIIEKAVQAFKAAEAARHARE 360

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           + RRK VL+ ++LPGKLADC+ RDP +SE+++VEGDSAGGSAKQGR R  QAILPLRGKI
Sbjct: 361 MVRRKSVLESSTLPGKLADCASRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKI 420

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LN+E+    K+  + EI  LITALG GI  + FD+++LRYH+IIIMTDADVDGAHIRTLL
Sbjct: 421 LNIEKTDDSKIYKNTEIQALITALGLGIKGEEFDVSQLRYHRIIIMTDADVDGAHIRTLL 480

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           LTFF+R    ++  G++YI  PPL+ + RG++  Y   E  L++
Sbjct: 481 LTFFYRYQRMMVDQGYVYIACPPLFKVERGRNHYYCYSERELQE 524



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 39/147 (26%), Gaps = 7/147 (4%)

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
           +            +  I  +   +  +    +    L   L    +  E  +  S     
Sbjct: 404 QGRDRRFQAILPLRGKILNIEKTDDSKIYKNTEIQALITALGLGIKGEE--FDVSQLRYH 461

Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721
            ++      V    +      F +  +   +    +      +  +    +         
Sbjct: 462 RIIIMTDADVDGAHIRTLLLTFFYRYQRMMVDQGYVYIACPPLFKVERGRNHYYCYSERE 521

Query: 722 LLDTIF---SIGRKGISMQRYKGLGEM 745
           L + +           ++QR+KGLGEM
Sbjct: 522 LQERLATFPDNA--SYNIQRFKGLGEM 546


>gi|300023854|ref|YP_003756465.1| DNA topoisomerase IV subunit beta [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525675|gb|ADJ24144.1| DNA topoisomerase IV, B subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 669

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/657 (35%), Positives = 343/657 (52%), Gaps = 24/657 (3%)

Query: 1   MSDNI-------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           M++         +++ Y    I++L+GL+ V++RP MYIG TD E  +HH+  EV+DN++
Sbjct: 16  MTEKSSRARKPAESAGYSEHDIEVLEGLEPVRRRPGMYIGGTD-EKAMHHLFAEVIDNSM 74

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQK 112
           DE++ G+A  I V L+ DG   V+DNGRGIP   + +   +S  EV++T LHAGGKF+ K
Sbjct: 75  DEAVAGHATWIEVELSADGFLAVTDNGRGIPVGPYPKNKSLSTLEVVLTVLHAGGKFDSK 134

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +Y  SGGLHGVGVSVVNALS  L++++ R+  +Y M F  GI    L   GS  N  GT+
Sbjct: 135 AYNTSGGLHGVGVSVVNALSETLEVQVARDQQLYRMVFSRGIPQTKLEKLGSIMNRRGTK 194

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKG 227
           V F P   IF     F    L    R  ++L + V+I             P E    + G
Sbjct: 195 VRFRPDEKIFGKGAAFKPSRLLKMSRAKAYLFAGVEIRWKCAPELIKDDTPSEAVFHFPG 254

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           G+  +++     +  + +     +  +D  + S++ A+ W        L + N +P  +G
Sbjct: 255 GLADYLTESIDGRTRVTKDIFSGRIEKDGGHGSVEWAVAWISDEDGFSLSYCNTVPTAEG 314

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GLR AL + + +Y E +       + +  +D      S LS+ + +P F  QTK+
Sbjct: 315 GTHENGLRQALYKGLRAYGELTGNK--KAQQITSEDVMSTAASTLSVFIREPEFQGQTKD 372

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + E   +VE+ V D    WL + P +A  +++  +D S  R   RR ++   R+   
Sbjct: 373 KLATVEATKIVEAAVRDAFDHWLADSPQQATKLLEWTVDQSEERLKRRREKE-VGRQSAT 431

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCS +    +E+F+VEGDSAGGSAK  R RE QAILPLRGKILNV  A  
Sbjct: 432 RKLRLPGKLADCSIQQAAGTEIFIVEGDSAGGSAKSARDRETQAILPLRGKILNVANASS 491

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            K+  +Q +  LI ALG G     +    LRY ++IIMTDADVDGAHI +LL+TFF+++M
Sbjct: 492 AKLSQNQLLADLIQALGAGT-AAKYRDEDLRYERVIIMTDADVDGAHIASLLITFFYQEM 550

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED-YLINQSLSEEIELFCDSKGVISK 584
           P LI NG L++  PPLY I+    + Y ++E   +          +         G +  
Sbjct: 551 PELIENGHLFLAVPPLYKISDKSDVAYARNEAHRDQLIETQFKNKKPKVTRFKGLGEMDF 610

Query: 585 NDLRNFIDDALK---IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            DL+    D  +   +   I +   +     +   + S         +   + A  L
Sbjct: 611 KDLKETTMDKRRRTLLRVAIGEGERDMLSEVVNSLMGSKPEARFRFIQERAAFAKDL 667



 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 8/189 (4%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  +     +S    LA+ +  +   +   +       + ++      V    +    
Sbjct: 483 ILNVANASSAKLSQNQLLADLIQALGAGTAAKYRDEDLRYERVIIMTDADVDGAHIASLL 542

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F +    + I +  +      +  +    D            L++T F    K   + 
Sbjct: 543 ITFFYQEMPELIENGHLFLAVPPLYKISDKSDVAYARNEAHRDQLIETQFKN--KKPKVT 600

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA--DDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM+   L ETT++   R+LLRV I +  +    ++ + LMG + E R  FIQE 
Sbjct: 601 RFKGLGEMDFKDLKETTMDKRRRTLLRVAIGEGERDMLSEVVNSLMGSKPEARFRFIQER 660

Query: 796 SLPS-ALDI 803
           +  +  LDI
Sbjct: 661 AAFAKDLDI 669


>gi|254453955|ref|ZP_05067392.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 238]
 gi|198268361|gb|EDY92631.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 238]
          Length = 703

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 218/573 (38%), Positives = 315/573 (54%), Gaps = 17/573 (2%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+++       S+YDA SI++L+ ++ V+ RP MYIG  D    LHHM+ E++DN++DE+
Sbjct: 52  MANDLLSGQTPSNYDASSIEVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIVDNSMDEA 110

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A  I V L+ +G  TV DNGRGIP  +H +    SA EVI   L+AGGKF+  SY+
Sbjct: 111 VAGHATWIEVELHANGHVTVRDNGRGIPVGMHPKLPNKSALEVIFCTLNAGGKFSGDSYQ 170

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  L++ +     ++ M F  G+   PL   G+A N  GT VTF
Sbjct: 171 TSGGLHGVGSSVVNALSDHLRVEVAINKELFMMEFSRGVPQAPLAKIGAAPNRRGTAVTF 230

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P  +IF   +     L    R  ++L S V+I           P+E T  + GG+  ++
Sbjct: 231 HPDPEIFGSLELKPARLFKMARSKAYLFSGVEIRWKTDINDGETPQEATFKFPGGLADYL 290

Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +            P                ++ A+ W       +  + N +P  +GGTH
Sbjct: 291 NETLAGATTYSDKPFAGTVDFTDKFNVPGKVEWAINWTPTRDGFIQSYCNTVPTPEGGTH 350

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G  +A+ + I SY E+         ++  +D   G  +++S  + DP F  QTK++L 
Sbjct: 351 EQGFWAAVLKGIKSYGERVNNK--KATNITREDLTTGAGALVSCFIRDPEFVGQTKDRLA 408

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +++ + +V+  V D    WL      A  I+  ++  S  R   ++ ++ T RK      
Sbjct: 409 TTDAQRMVQLAVADHFDNWLAADTKSAGAILDFLVLRSEERLRRKQEKE-TSRKTATQKL 467

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DCS +    +ELF+VEGDSAGGSAK  R+R+NQA+LPLRGKILNV  A   K+
Sbjct: 468 RLPGKLTDCSSKTRDGTELFIVEGDSAGGSAKMARNRKNQALLPLRGKILNVLGAASSKI 527

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++ EI  L  ALG  +G   F+++ LRY K+IIMTDADVDGAHI  LL+TFFF QM  +
Sbjct: 528 GTNSEISDLTQALGVQLGAK-FNVDDLRYDKVIIMTDADVDGAHIAALLMTFFFSQMRPM 586

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           I  G LY+  PPL+ +T+G   +Y  DE     
Sbjct: 587 IDAGHLYLACPPLFRVTQGARREYCLDEAEKNA 619



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N        +   S++++    +  +    ++      D ++      V    +    
Sbjct: 516 ILNVLGAASSKIGTNSEISDLTQALGVQLGAKFNVDDLRYDKVIIMTDADVDGAHIAALL 575

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG---ISMQ 737
             F F      I +  +      +  +     +          + + + G  G   + + 
Sbjct: 576 MTFFFSQMRPMIDAGHLYLACPPLFRVTQGARREYCLDEAE-KNAVLARGLGGSGKMDVS 634

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM+A  L ETT++P +R L+RV I   +A +  DL  RLMG + E R ++IQEN
Sbjct: 635 RFKGLGEMDAKDLKETTMDPTSRKLIRVSIDEDEAGETADLVERLMGKKPEMRFQYIQEN 694

Query: 796 SLPS-ALDI 803
           +     LD+
Sbjct: 695 AKFVLELDV 703


>gi|18916466|dbj|BAB85518.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 465

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 302/469 (64%), Positives = 367/469 (78%), Gaps = 4/469 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I+L D 
Sbjct: 121 DAVAPLKVVGDAPGRRGTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIALSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRADANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEVR VVE+ +N+ L AW EEHP EAK+IV KV+ A+  R+AAR
Sbjct: 299 VPDPKFSSQTKDKLVSSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKVIQAAAAREAAR 358

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LT RK  L ++SLPGKLADC E+DP KSELF+VEGDSAGGSAKQGR+RE QA+LPL
Sbjct: 359 KARELT-RKSPLSVSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPL 417

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           RGKILNVER R DKML S++IGTLITALGTGI  D F I+KLRYHKII+
Sbjct: 418 RGKILNVERVRPDKMLGSEQIGTLITALGTGI-SDEFSIDKLRYHKIIV 465


>gi|317123186|ref|YP_004097298.1| DNA gyrase subunit B [Intrasporangium calvum DSM 43043]
 gi|315587274|gb|ADU46571.1| DNA gyrase subunit B [Intrasporangium calvum DSM 43043]
          Length = 704

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 279/613 (45%), Positives = 391/613 (63%), Gaps = 46/613 (7%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            YDA +I +L+GL+AV+KRP MYIG T GE GLHH++YE++DN++DE+L GYAD I +TL
Sbjct: 25  DYDASAITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNSVDEALAGYADTIDITL 83

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V DNGRGIPTD+H  E +SA E+++T+LHAGGKF    YKVSGGLHGVG SVV
Sbjct: 84  LADGGVRVKDNGRGIPTDIHPVEKMSAVELVLTQLHAGGKFGGGGYKVSGGLHGVGSSVV 143

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ LK+ ++++G ++ MSF  G+ D PL     A ++TGT +TF P+++IF   DF+
Sbjct: 144 NALSTTLKVAVRQKGYVHRMSFTMGVPDGPLRR-EEATDETGTTITFWPNAEIFDSVDFD 202

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEP------------------------------ 218
           ++TL+ RL++++FLN  + ++L+D+R  +                               
Sbjct: 203 FETLRARLQQMAFLNKGLTLNLVDERVDQRAEASEDVDLDGVESDLATVVEDGDNGHDVP 262

Query: 219 ---------REITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQGSR--DNISIDLAMRW 265
                    +  T  Y GG+  +V++L+  K  +P+    I I+      ++S++LAM+W
Sbjct: 263 TSGRKTLTAKTATYRYDGGLVDYVNHLNSSKRSEPVHPEVIAIEVEDEARSLSLELAMQW 322

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
              Y E+V  + N I   +GGTH  G R+A+T+ I  +  K    K+   ++ GDD REG
Sbjct: 323 TSAYSESVHTYANTINTHEGGTHEEGFRAAMTKLINDFARKQNLLKEKDENLTGDDVREG 382

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+V+S+K+ DP+F  QTK KL +SEV+  V+  + D    WLE HP E K IV+K + A
Sbjct: 383 LTAVISVKLGDPQFEGQTKTKLGNSEVKGFVQRAMTDEFGHWLETHPNEGKDIVRKSIQA 442

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+AR+ TRRKG+L+   LPGKL DC  +DP  SE+F+VEGDSAGGSA Q R+ 
Sbjct: 443 AAARMAARKAREATRRKGLLESGGLPGKLKDCQSKDPSLSEVFIVEGDSAGGSATQARNP 502

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
             QAILP+RGKILNVE+AR DK+L++QE+  LI+A GTGIG+D FD+ K RYHKII+M D
Sbjct: 503 HIQAILPIRGKILNVEKARIDKILANQEVQALISAFGTGIGED-FDLAKARYHKIILMAD 561

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           ADVDG HIRTLLLT  FR M  LI  G++Y+ +PPL+ +    +       +   D L  
Sbjct: 562 ADVDGMHIRTLLLTLLFRFMRPLIEAGYVYLAQPPLFRLRWSNAPHQFAYSDRERDGLTE 621

Query: 566 QSLSEEIELFCDS 578
              +    L  D+
Sbjct: 622 LGKANGWRLPKDN 634



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +L ETT++  TR+LL+V + DA++AD++F+ LMG++VE RR FIQ+N
Sbjct: 636 VQRYKGLGEMNYQELGETTMDQSTRTLLQVTLDDAAKADEVFAVLMGEDVESRRTFIQKN 695

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 696 ARDVRFLDI 704


>gi|167044922|gb|ABZ09588.1| putative DNA gyrase B [uncultured marine microorganism
           HF4000_APKG8D23]
          Length = 646

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 274/576 (47%), Positives = 366/576 (63%), Gaps = 18/576 (3%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           M++GD    S LHH I+EV+DNA+DE L GY   + V L  +GS TV D+GRGIP     
Sbjct: 1   MFLGDPHDGSALHHCIWEVVDNAVDEHLAGYNSTVEVNLEKNGSVTVIDHGRGIPVGKIP 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+SAAEVIMT+LHAGGKF+ K+YKV+GGLHGVGVS VNA+S  L + I R+G ++  +
Sbjct: 61  EEGVSAAEVIMTKLHAGGKFDNKAYKVAGGLHGVGVSAVNAVSEKLSMTIHRDGKVWTQN 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQI 208
           F+ G     L  TG   +   T + F P   IFS   DF+++ +  RLR  +FLN+ +QI
Sbjct: 121 FVRGKRKAVLKATGKTTSTG-TTINFKPDMKIFSDVTDFDFEQINTRLRRTAFLNAGLQI 179

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI----QGSRDNISIDLAMR 264
            L D R  +  EI   Y GG+  +V  ++  KK +    I I     G +  + +++A++
Sbjct: 180 WLRDFRGQDTVEIEHKYDGGLRQYVESMNEKKKAIHDEVIHILGSKDGDKGEVLVEVALQ 239

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           W D Y E++ CFTN I   DGG HLSGL+S+LTR + SY +     K    S+ GDD RE
Sbjct: 240 WTDAYSESIHCFTNIIHNTDGGAHLSGLKSSLTRTVNSYAQSRKLLKNV-SSLSGDDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G ++V+SIK PDP F++QTK KLV+SEV  +VE  VND L  + EE+P  A+ IV+KV+ 
Sbjct: 299 GLSAVISIKHPDPSFNAQTKAKLVTSEVAGIVEQIVNDKLGDYFEENPAVARSIVEKVVL 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R+AAR+ARDLTRRKGVL+   LPG+LADC  RDP + EL++VEG+SAGGSAK  R 
Sbjct: 359 ASKAREAARKARDLTRRKGVLEGGGLPGQLADCQSRDPAECELYIVEGESAGGSAKTARD 418

Query: 445 RENQAILPLRGKILNVERAR--FDKMLSSQEIGTLITALGTGIGQDS-----FDINKLRY 497
           R  QA+LPLRGKILNVER +    K+ S+++I  +I ALG G+G +      FD  KLRY
Sbjct: 419 RRTQAVLPLRGKILNVERQQRNLTKVFSNEQIQRMIRALGAGVGNEEEDEGAFDPEKLRY 478

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KIIIMTDAD+DGAHIRTL+LTF +R M   I NG +YI  PPL+ ++RGK  ++V  E+
Sbjct: 479 GKIIIMTDADIDGAHIRTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEWVHTEK 538

Query: 558 SLEDYLINQSLSEEIELFC----DSKGVISKNDLRN 589
             +  +                    G ++   L  
Sbjct: 539 DRDAVVKRLQKEAPTAKINVQRYKGLGEMNPEQLWQ 574



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 30/215 (13%)

Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQE 673
           +Q  ++ VF+ E  Q +  +L + + N      E+ E ++         ++      +  
Sbjct: 437 QQRNLTKVFSNEQIQRMIRALGAGVGN-----EEEDEGAFDPEKLRYGKIIIMTDADIDG 491

Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIG 730
             +      F +    + I +  +      + S+        +        ++  +    
Sbjct: 492 AHIRTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEWVHTEKDRDAVVKRLQKEA 551

Query: 731 -RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI------------------TDAS 771
               I++QRYKGLGEMN  QLW+TT++P++R++ +VK+                   +A 
Sbjct: 552 PTAKINVQRYKGLGEMNPEQLWQTTMDPESRTMFQVKMPEKPSEVRFTDVGEQMSDEEAV 611

Query: 772 --QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             + ++LFS LMG++V  RR FI++N+    ALD+
Sbjct: 612 EGEVNELFSILMGEDVPDRRAFIEKNASKVTALDV 646


>gi|254476308|ref|ZP_05089694.1| DNA topoisomerase IV, B subunit [Ruegeria sp. R11]
 gi|214030551|gb|EEB71386.1| DNA topoisomerase IV, B subunit [Ruegeria sp. R11]
          Length = 652

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/655 (35%), Positives = 345/655 (52%), Gaps = 22/655 (3%)

Query: 1   MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D++ ++    +YDA SI++L+GL+ V++RP MYIG TD E  LHHM+ E+LDN++DE+
Sbjct: 1   MADDLLSTPAADTYDASSIEVLEGLEPVRQRPGMYIGGTD-ERALHHMVAEILDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I V L+ D + T+ DNGRGIP D H +    SA EVI+  LHAGGKF+ K+Y+
Sbjct: 60  VAGHANRIEVELHADYAVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  + +++ +   ++E  F  GI    +   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGSSVVNALSDSMVVQVAKNKELFEQRFSRGIPLGGVEKVGAAPNRRGTSVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFV 233
                IF    F    L   +R  ++L S V+I           P E T  + GG+  ++
Sbjct: 180 HADEQIFGSHRFKPKRLFTLVRSKAYLFSGVEIRWKSHIDDGETPTEATFHFPGGLRDYL 239

Query: 234 SYLDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + +                   +   +   ++ A+ W          + N +P  +GGTH
Sbjct: 240 TEVLGKSSVYADVPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G  +A+ + I +Y E     K  +  +  DD   G  +++S  + DP F  QTK++L 
Sbjct: 300 VTGFWAAILKGIKAYGELVNNKKAAQ--ITRDDLMTGGCALVSCFIADPAFVGQTKDRLS 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +     +VE+ V D    WL      A  I+  ++  +  R   ++ ++ T+RK      
Sbjct: 358 TEAAAKMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRKQEKE-TQRKTATKKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+ +D   +ELF+VEGDSAGGS K  R+R NQA+LPL+GKILNV  A   K+
Sbjct: 417 RLPGKLTDCTSKDRSGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASGKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S+ EI  L  ALG G+G   F+++ LRY KIIIMTDADVDGAHI +LL+TFFF QM  L
Sbjct: 477 GSNAEIRDLCEALGVGLG-TKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPL 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G    Y  DE   + +L      +           G +   D
Sbjct: 536 IDGGHLYLACPPLFRLTQGARRVYCLDEAERDMWLEKGLGGKGKIDVSRFKGLGEMDAKD 595

Query: 587 LRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+           I   I +  P      +E+ +           + N     +L
Sbjct: 596 LKETTMDPKTRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENAKFVEEL 650



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
            D ++      V    +      F F      I    +      +  L     ++     
Sbjct: 504 YDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACPPLFRLTQGARRVYCLDE 563

Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775
                 +   +G KG I + R+KGLGEM+A  L ETT++P TR L+RV I +    +  D
Sbjct: 564 AERDMWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPKTRKLIRVTIDEDEPGETGD 623

Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           L  RLMG + E R ++IQEN+     LD+
Sbjct: 624 LVERLMGKKPELRFQYIQENAKFVEELDV 652


>gi|325293012|ref|YP_004278876.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
 gi|325060865|gb|ADY64556.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
          Length = 706

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/645 (35%), Positives = 345/645 (53%), Gaps = 20/645 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DN++DE++ G+A+ I V 
Sbjct: 66  DDYGASSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNSMDEAVAGHANFIEVH 124

Query: 68  LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           L+ +G  TV+DNGRGIP + H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 125 LDTEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 184

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185
           VVNALS  L++ + R   +Y   F  G     L   G   N  GT V F P   IF    
Sbjct: 185 VVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRRGTRVRFHPDPQIFGDHA 244

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDRH 239
            F    +    R  ++L   V+I               P +    + GG++ +++     
Sbjct: 245 KFEPARIFRMARSKAYLFGGVEIRWSCDPGMVPAGGEIPEKAVFHFPGGLKDYLAATLGK 304

Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  + +     +  +   + +++ A+ W  G    +  + N IP  +GGTH +G R ALT
Sbjct: 305 EFTVTREIFSGRTEKTGGHGALEWAVTWYGG-DTQIHSYCNTIPTPEGGTHEAGFRIALT 363

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + + +Y E +   +  +  +  DD       +LS+ + +P F  QTK+KL + E + +VE
Sbjct: 364 KGLKNYAELTQNKRARE--ITTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIVE 421

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D    +L  +P EA  ++  V++        RR      RK  +    LPGKLADC
Sbjct: 422 NALRDPFDHYLTGNPGEAAKLLDWVIER-AEERLRRRKEKEVNRKTAVRKLRLPGKLADC 480

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S+   + +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 481 SQNTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQQIADL 540

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I ALG G  +  +    LRY +IIIMTDADVDGAHI +LL+TFF+++MP LI    LY+ 
Sbjct: 541 IQALGCGT-RTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNHLYLA 599

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL-FCDSKGVISKNDLRNFI---DD 593
            PPLY I +G    Y +D+    + +      +++E+      G +    L+      + 
Sbjct: 600 VPPLYVIRQGAKSAYARDDAHRAELMETVFKGKKVEIGRFKGLGEMMAAQLKETTMDPEK 659

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
              +   I D      +  ++  + +         +   + A  L
Sbjct: 660 RTLLRVEIDDVDFEGTREAVDNLMGTKADARFRFIQERAAFADNL 704



 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +S   ++A+ +  +   +   +       + ++      V    +    
Sbjct: 520 ILNVGSASREKLSANQQIADLIQALGCGTRTKYREEDLRYERIIIMTDADVDGAHIASLL 579

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISM 736
             F +    + I  N +    +  L +I  G K            L++T+F  G+K + +
Sbjct: 580 ITFFYQEMPELIRGNHLY-LAVPPLYVIRQGAKSAYARDDAHRAELMETVFK-GKK-VEI 636

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQE 794
            R+KGLGEM A+QL ETT++P+ R+LLRV+I D       +    LMG + + R  FIQE
Sbjct: 637 GRFKGLGEMMAAQLKETTMDPEKRTLLRVEIDDVDFEGTREAVDNLMGTKADARFRFIQE 696

Query: 795 NSLPS-ALDI 803
            +  +  LDI
Sbjct: 697 RAAFADNLDI 706


>gi|254284215|ref|ZP_04959183.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR51-B]
 gi|219680418|gb|EED36767.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR51-B]
          Length = 629

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/645 (36%), Positives = 337/645 (52%), Gaps = 22/645 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y+AD+I++L GL+ V+KRP MY   TD     +H+  EV+DN++DE+L G+AD I VT
Sbjct: 2   SQYNADAIEVLTGLEPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHADQIDVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS TV DNGRG+P D H E G+   EVI++ LHAGGKF+  +Y+ SGGLHGVGVSV
Sbjct: 58  LHADGSITVVDNGRGMPVDQHPELGLPGVEVILSTLHAGGKFSDTNYQFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS++L++ I+R+G I+ M F  G     L    +    +TGT + FLP    F    
Sbjct: 118 VNALSTYLEVTIRRDGQIHRMRFEGGDKTGDLAPIDTCGKRNTGTGLRFLPDPSYFDSAH 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L H LR  + L   ++++L D++  E  E     + GI  +++        + + 
Sbjct: 178 FSLPRLNHVLRAKAVLCPGLRVTLFDEKKNEKAEWYY--EDGIADYLADATIDYPVIPEK 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     S    ++D A++W  +G       + N IP   GGTH++GLRS L   +  + E
Sbjct: 236 PFTGSFSGPTDAVDWAIQWLPEGGEVLAESYVNLIPTAQGGTHVNGLRSGLLEAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    +LS K+ DP+FS QTKE+L S E    V     D  S
Sbjct: 296 LRNLLPRG-VKLTPEDIWDRCAYLLSSKLADPQFSGQTKERLSSREAAGFVSGVAKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  +A+++ +  ++ +  R  + +      RK V    +LPGKLADC+  DP + 
Sbjct: 355 LWLNQHTGDAELLAELCINRAQARLRSAKK---VVRKKVTSGPALPGKLADCTTEDPARG 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN       ++L+SQE+  +  ALG   
Sbjct: 412 ELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEIDSQEILASQEVHNISVALGIDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D  D++ LRYHKI I+ DAD DG HI TL+   F R    L+  G +++  PPLY I 
Sbjct: 472 GSD--DLDGLRYHKICILADADSDGLHIATLICALFLRHFRPLVRAGHVFVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE      L      +        +           +      +  +    
Sbjct: 530 VGKEVHYALDESEKNGVLERLQAEKSRAKPNVQRFKGLGEMNPPQLR-----ETTMDPDT 584

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
               +  +E    +   N   D  +    A    + L    + +E
Sbjct: 585 RRLVQLVLESDDDT---NSTFDMLLAKKRAGDRKSWLESKGDLAE 626



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           D+ +  G    L       R   ++QR+KGLGEMN  QL ETT++PDTR L+++ +    
Sbjct: 539 DESEKNGVLERLQA--EKSRAKPNVQRFKGLGEMNPPQLRETTMDPDTRRLVQLVLESDD 596

Query: 772 QADDLFSRLM-----GDEVEPRREFIQE 794
             +  F  L+     GD    R+ +++ 
Sbjct: 597 DTNSTFDMLLAKKRAGD----RKSWLES 620


>gi|159464611|ref|XP_001690535.1| DNA gyrase subunit B-like protein [Chlamydomonas reinhardtii]
 gi|158280035|gb|EDP05794.1| DNA gyrase subunit B-like protein [Chlamydomonas reinhardtii]
          Length = 649

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 249/643 (38%), Positives = 354/643 (55%), Gaps = 21/643 (3%)

Query: 16  QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN-MDGSC 74
           Q+L+GL+ V+KRP MYIG T G  GLHH+I+EV+DNA+DE   G+A  + V ++   G  
Sbjct: 1   QVLEGLEPVRKRPGMYIGGT-GSDGLHHLIWEVVDNAVDEVQAGHASAVEVDVDLSSGWV 59

Query: 75  TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGVGVSVVNALS 132
           +V DNGRGIP D+H   G SA E ++T LHAGGKF  +   YKVSGGLHGVG+SVVNALS
Sbjct: 60  SVVDNGRGIPVDVHPVTGKSALETVLTVLHAGGKFGGDNSGYKVSGGLHGVGISVVNALS 119

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVT-----GSAGNDTGTEVTFLPSSDIF-SVQD 186
           S L++ + R G+ Y   +  G     L V            +GT+V FL  + IF     
Sbjct: 120 SELEVTVWRAGSRYSQRYSRGAPLEELRVQLLPPGSEEAGRSGTQVRFLYDASIFAKDVA 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLI--DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
           ++ D +  RL EL+FLN+   I      +  PE +     Y GG+  FV  L     PL 
Sbjct: 180 YSADVIATRLHELAFLNARATIRFRALRRGKPEGQWQVFQYSGGLREFVGCLQAAYTPLH 239

Query: 245 QSPIRIQGSRDN-ISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++ +  +    + + ++ A++W  D + E V  F N+I   DGGTH+ GLR+ LTR +T 
Sbjct: 240 EALVVTRADGGSGVVVEAALQWAADSFKEEVRGFANSIHTVDGGTHMEGLRAGLTRAVTQ 299

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
              K+   K     + G+  REG  +V+S+K+P+P F  QTK +L + EVR +VE+ V +
Sbjct: 300 LGRKAKQIKDSDPPLSGEHVREGLGAVVSVKVPNPEFEGQTKTRLGNPEVRKIVENAVYE 359

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI--ASLPGKLADCSER 420
            +  WLE HP     +  K L ++   +AAR+AR+L RRK  L    ++LPGKLADC+  
Sbjct: 360 AVGEWLEAHPAALAALCAKALTSARAAEAARKARELVRRKTSLFTGRSTLPGKLADCTST 419

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK--MLSSQEIGTLI 478
           + +++E+++VEGDSAGGSAKQ R R  QAILPL+GKILNVER       M  + EI  LI
Sbjct: 420 NREETEIYIVEGDSAGGSAKQARDRRFQAILPLKGKILNVERLTDANELMYKNTEISNLI 479

Query: 479 TA---LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
                   G+         L Y KI+++TDADVDGAHIRTLLLTF FR  P L   G +Y
Sbjct: 480 ALGYERTVGVRSRCHAFKLLLYGKIVVLTDADVDGAHIRTLLLTFLFRHRPQLFAAGRVY 539

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +  PPLY + RGKS+ +   +  L   +  Q L+         KG+      + +     
Sbjct: 540 VAVPPLYKVERGKSVWWAHSDAELAALVSEQRLAPGGYSVQRFKGLGEMMPQQLWDTTLN 599

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
              +L++               +      E  + +  + + +L
Sbjct: 600 PESRLLRRLTVRDVSEADSMLTMLMGTKVEPRKALIEAYSRRL 642



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 14/193 (7%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---VQEQFVL 677
           + N E   + N  L  K     N IA   E++            K +  G   V     +
Sbjct: 456 ILNVERLTDANE-LMYKNTEISNLIALGYERTVGVRSRCH--AFKLLLYGKIVVLTDADV 512

Query: 678 EGSSIFSFGSKYK-----RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR- 731
           +G+ I +    +      ++F+       +  L  +  G  +      + L  + S  R 
Sbjct: 513 DGAHIRTLLLTFLFRHRPQLFAAGRVYVAVPPLYKVERGKSVWWAHSDAELAALVSEQRL 572

Query: 732 --KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
              G S+QR+KGLGEM   QLW+TTLNP++R L R+ + D S+AD + + LMG +VEPR+
Sbjct: 573 APGGYSVQRFKGLGEMMPQQLWDTTLNPESRLLRRLTVRDVSEADSMLTMLMGTKVEPRK 632

Query: 790 EFIQENSLPSALD 802
             I+  S   +LD
Sbjct: 633 ALIEAYSRRLSLD 645


>gi|529464|gb|AAA91333.1| topoisomerase II subunit B [Mycoplasma gallisepticum]
          Length = 633

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/595 (38%), Positives = 352/595 (59%), Gaps = 12/595 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y+   I++LKGL+ V+KRP MYIG TD   GLHH+++E+ DNA+DE+L G A+ I V 
Sbjct: 3   SNYNEKHIKVLKGLEPVRKRPGMYIGSTD-TRGLHHLVWELFDNAVDEALNGSANKIEVV 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
              DGS  V+DNGRGIP   +    +S  + + T LHAGGKF+ ++YKVSGGLHGVG SV
Sbjct: 62  HKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L + + R+G +YE  + + G +  PL   GS+    GT + F P   IF    
Sbjct: 122 VNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKMGSST-KHGTIIQFWPDPTIFKNIQ 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN   ++ RL E SFL   ++I  +D+ +PE  + T   K GI  ++ Y++ +KK  +  
Sbjct: 181 FNPYMIKERLHESSFLFKGLKIVFVDENNPELSQ-TFIAKDGILEYLKYVNENKKT-ISK 238

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G  + I +D   ++ D   E ++ F N++   +GG+H +G + A+   I  Y +K
Sbjct: 239 IIPFKGDYEKIVVDGCFQYTDNESELIISFANSVKTSEGGSHENGFKQAMLETINDYSKK 298

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364
                   +     D +EG + VLS+++P+    +  QTK KL + EV+  V   +   L
Sbjct: 299 YKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKILTQQL 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDPK 423
             +LEE+  +AK ++++       ++AA++A++ T++ K       L GKL    +++P 
Sbjct: 359 FYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTPAQQKNPL 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++E+FLVEGDSAGG+AK GR +  QAILPLRGK++NVE++R   +L ++EI ++I+ LG 
Sbjct: 419 QNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSIISCLGC 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG + F+I  L+YHKIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI   PLY 
Sbjct: 479 GIGNN-FNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALAPLYK 537

Query: 544 I--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           I         +  D+  L++       S E++ +     + S+      +D + +
Sbjct: 538 ITAKNSNKSAFAWDDYQLDELRTKYG-SYEVQRYKGLGEMNSEQLWTTTMDPSKR 591



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
             +QRYKGLGEMN+ QLW TT++P  R L++V I +A+QA+   S LMGD+   R+ +I 
Sbjct: 565 YEVQRYKGLGEMNSEQLWTTTMDPSKRQLIQVSIQNAAQAERKVSILMGDDASIRKNWIN 624

Query: 794 EN 795
           EN
Sbjct: 625 EN 626


>gi|58039710|ref|YP_191674.1| DNA topoisomerase IV subunit B [Gluconobacter oxydans 621H]
 gi|58002124|gb|AAW61018.1| DNA topoisomerase I [Gluconobacter oxydans 621H]
          Length = 671

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 227/573 (39%), Positives = 323/573 (56%), Gaps = 19/573 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
               ++ Y A  I++L+GL+ V++RP MYIG TD  +  HH+  E+LDNA+DE++ G+A 
Sbjct: 20  KGTVDTEYGAHDIEVLEGLEPVRRRPGMYIGGTDD-TAYHHLASEILDNAMDEAVAGHAT 78

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            I V L    +  V DNGRGIPTD H +    SA EVI T LHAGGKF+ K+Y  SGGLH
Sbjct: 79  TIDVRLEGPRTLMVRDNGRGIPTDPHPKFPEKSALEVIFTTLHAGGKFSGKAYDTSGGLH 138

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG SVVNALS  L++ + R+  +Y   F+ G+   PL   G+A N  GT V F P  +I
Sbjct: 139 GVGSSVVNALSEKLEVEVARDRTLYRQDFVRGVSLAPLAEVGNAPNRRGTTVRFTPDPEI 198

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY 235
           F    F+   L       + L   V I    +          P E T+ +  G+E  +S 
Sbjct: 199 FGNHHFSPARLYRMCCSKAALFRGVTIQWKCEPSFIKAGDETPVEATIQFPNGLEDALSA 258

Query: 236 LDRHKKPLMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                  L+                R    ++ A+ + +    ++  F N IP   GGTH
Sbjct: 259 ELGPDPDLLTPIWAGDVELPIAADGRTGGRVEWAVAFLESGTASLSSFCNTIPTPQGGTH 318

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G R+AL + + ++  +    +    ++  +D      + LS+ + DP+F  QTK+KL 
Sbjct: 319 EAGFRAALVKGLRAWGVQRKVKRAA--AISAEDVLGSVAAKLSVFIRDPQFQGQTKDKLT 376

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           S E   +VE  + D +  WL  +P +A  ++  +++ +  R   R  +D T RK      
Sbjct: 377 SQEASRLVEGALRDRVDHWLGGNPQQADTLLAFMVERAEERLRRREVKD-TARKSATRKL 435

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC+  +  ++ELFLVEG+SAGGSA+Q R RE QA+LPLRGKILNV  A  DK+
Sbjct: 436 RLPGKLTDCTRENAAETELFLVEGESAGGSARQARDRETQAVLPLRGKILNVASATTDKL 495

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++QE+  L  ALG GIG   FDI++LRY ++IIMTDADVDGAHI +LL+TFF+R+MP L
Sbjct: 496 RANQELRDLTEALGCGIGAS-FDISRLRYGRVIIMTDADVDGAHIASLLMTFFYREMPEL 554

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           I +G L++ +PPLY IT G    Y  D++    
Sbjct: 555 IRHGHLHLAQPPLYRITHGPKTVYAMDDQDRVR 587



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 5/74 (6%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI---TDASQADDLFSRLMGDEVEPRRE 790
           + + R+KGLGEM    L ETT++P  R+LLRV I    D     +    LMG + E R  
Sbjct: 599 VEVSRFKGLGEMPVKDLKETTMDPARRTLLRV-ITPAEDRLATSERVESLMGRKPELRFR 657

Query: 791 FIQENSLPS-ALDI 803
           FIQE++     LD+
Sbjct: 658 FIQEHARSVDELDV 671


>gi|294155351|ref|YP_003559735.1| DNA topoisomerase IV, B subunit [Mycoplasma crocodyli MP145]
 gi|291600024|gb|ADE19520.1| DNA topoisomerase IV, B subunit [Mycoplasma crocodyli MP145]
          Length = 640

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/587 (40%), Positives = 337/587 (57%), Gaps = 12/587 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N++Y A +I  LKGL+AV+KRP MYIG TD  +GLHH+++E++DN+IDESL GYA+ I +
Sbjct: 5   NNTYTAKNITQLKGLEAVRKRPGMYIGSTD-VNGLHHLVWEIVDNSIDESLAGYANKIIL 63

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGS  + DNGRGIP         SA E++ T LHAGGKFN+ +YK SGGLHGVG S
Sbjct: 64  TLKEDGSVIIEDNGRGIPVGKVDAT-RSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSS 122

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + + R+G  Y   F    +       G      GT V F P  D F    
Sbjct: 123 VVNALSTKLMVTVYRDGFEYLTEFKQDKIIQKTHKVGPTRKV-GTIVQFWPDYDFFKQAK 181

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            NY+ +  RL+E SFL S ++I +ID+++         +  GI AF+ +L+  K  + Q 
Sbjct: 182 LNYEVISERLKESSFLISGLEIKIIDEKTKSE--EIFKHVDGIAAFLGFLNDSKNAITQP 239

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                  +  I +D   ++ D Y+E ++ F NN+  +DGGTH +GL++ALT+    +   
Sbjct: 240 IT-FSDVKKEIEVDFGFQYTDSYNELIVSFVNNVKTRDGGTHETGLKTALTKVFNDFGTD 298

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364
               K         D REG T +LS+K+P+    F  QTK+KL + E +++VE  V   L
Sbjct: 299 EGVLKNRNV-FDPSDIREGLTVILSLKVPEKHLEFVGQTKDKLGTPEAKNIVEELVTKHL 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL--DIASLPGKLADCSERDP 422
             W+ E+   AK +++K+  A  +R+  ++ R   R+   +  D   L  KL     + P
Sbjct: 358 KLWIAENKQLAKKVLEKIKRAYEIRNEEKKQRQELRKTKSILKDKPILSDKLTPAQSKKP 417

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           ++ ELFLVEGDSAGGSAK GR R  QAILPLRGK++NVE+++   +L + EIGT+I ++G
Sbjct: 418 EEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINVEKSKLIDILKNTEIGTIINSIG 477

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G++ FD+ K +Y KIIIMTDAD DGAHI+ LLLTF +R M  LI +G ++I  PPLY
Sbjct: 478 AGYGKE-FDLTKAQYGKIIIMTDADTDGAHIQILLLTFLYRYMKPLIEDGRVFIALPPLY 536

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
                         + LE   I               G ++ + L  
Sbjct: 537 KALNKSKNVSKYAWDELELKAIISKAGSWEIQRYKGLGEMNADQLWE 583



 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 7/199 (3%)

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             +        +   V N E  + I++   +++   +N I     K +  +      ++ 
Sbjct: 440 RRYQAIL---PLRGKVINVEKSKLIDILKNTEIGTIINSIGAGYGKEFDLTKAQYGKIII 496

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-LD 724
                     +      F +      I   R+      +   +     +       L L 
Sbjct: 497 MTDADTDGAHIQILLLTFLYRYMKPLIEDGRVFIALPPLYKALNKSKNVSKYAWDELELK 556

Query: 725 TIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
            I    + G   +QRYKGLGEMNA QLWETT+NP+TRS+++V I D + ++   S LMG+
Sbjct: 557 AII--SKAGSWEIQRYKGLGEMNADQLWETTMNPETRSIVKVTIDDITLSERRVSTLMGN 614

Query: 784 EVEPRREFIQENSLPSALD 802
               R+ +I  +   S  D
Sbjct: 615 NASLRKNWIDRHVDFSNED 633


>gi|19909735|dbj|BAB87063.1| DNA gyrase subunit B [bacterium PC2]
          Length = 476

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 313/476 (65%), Positives = 380/476 (79%), Gaps = 7/476 (1%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+AD++ V LN DGS TV+DNGRGIPTD+H EEG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADLVQVILNADGSVTVTDNGRGIPTDIHAEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+L+I R+G  +EM F  G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLQLKIYRDGKQHEMRFERG 120

Query: 154 ILDNPLVVTGSAGND-------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                L VTG A          +GTEVTF PS   FS  DF+  TL+HRLREL+FLNS V
Sbjct: 121 DTVKSLEVTGVAPIREDTGKPLSGTEVTFYPSVTTFSHIDFDLKTLEHRLRELAFLNSGV 180

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
            I L D+R  EP E+ + Y+GG+EAFV +LD+ K P+++  I I+G ++ I +DLA+ WN
Sbjct: 181 VIKLADQRHAEPIEMILHYEGGVEAFVRHLDKSKTPILKDVIVIRGKKEGIELDLALWWN 240

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D YHE +LCFTNNIPQ+DGGTHLS  R++LTR +  Y+E S   KK+K SV G+D REG 
Sbjct: 241 DSYHETMLCFTNNIPQRDGGTHLSAFRASLTRIMGGYIESSGAGKKEKVSVTGEDAREGL 300

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+  ++GLS W EEHP+EAK +V K+++A+
Sbjct: 301 TCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEALCSEGLSTWFEEHPVEAKQVVAKIIEAA 360

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R+AAR+ARDLTRRK  L+I+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RE
Sbjct: 361 SAREAARKARDLTRRKSALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRE 420

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           NQA+LPLRGKILNVERARFD+MLSS  IGTLI ALGTGIG+D F+ +KLRYHKII+
Sbjct: 421 NQAVLPLRGKILNVERARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 476


>gi|240047651|ref|YP_002961039.1| Topoisomerase IV subunit B [Mycoplasma conjunctivae HRC/581]
 gi|239985223|emb|CAT05236.1| Topoisomerase IV subunit B [Mycoplasma conjunctivae]
          Length = 645

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 371/651 (56%), Gaps = 24/651 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A+ +++LKGL+AV+KRP MYIG TD   GLHH+I+E+ DNA+DE++ G+A  I + L
Sbjct: 2   EYSAEKLKVLKGLEAVRKRPGMYIGSTDIG-GLHHLIWEIFDNAVDEAIAGFATEIKLIL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             D S  +SDNGRGIP D H + G +  E++ + LHAGGKF+   YK + GLHGVG SVV
Sbjct: 61  KKDNSIEISDNGRGIPVDKH-KSGKTGVELVFSELHAGGKFSNDVYKTAAGLHGVGSSVV 119

Query: 129 NALSSWLKLRIKREGNIYEMSFING----ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           NALSS L++ + R+G  Y  SF NG    +    +        + GT V F P   IFS 
Sbjct: 120 NALSSKLEVWVYRDGYSYFTSFKNGGHLDVSTQKVEK----SKNRGTTVRFWPDFSIFSQ 175

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+ D +  RLRE SFL S+++IS  ++ S E      F++ G+ +FV +++  K  + 
Sbjct: 176 TSFSSDIISERLRETSFLVSNLKISFYNEISNEN--EIFFFQKGLISFVEFINVGKSLVH 233

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +  + ++G    I +++A+++   Y + ++ F NN+    GGTH +G R AL R IT+Y 
Sbjct: 234 KDVVFLEGESQGIQLEVALQYVSSYQDTIISFVNNVKTDQGGTHENGFRGALLRAITTYG 293

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
           ++     K K ++   D ++G +++LS+++P+P   F  QTK KL +   +SV E  + +
Sbjct: 294 QQ-KSLLKAKTNLEFSDVKQGLSAILSLRVPEPILEFVGQTKNKLSTLIAKSVTEEIIYN 352

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR--DLTRRKGVLDIASLPGKLADCSER 420
            L  +  ++  +A  I+  V ++   R +A+ A+  + T +    +   L GKL     +
Sbjct: 353 SLMTYFVQNKEDAAKIITHVNNSYQERISAKLAKIENKTSKNISKEKRILSGKLTPAQSK 412

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           + K+ E+FLVEG+SAGGSAK GR+R NQAILPL+GKI+N E+ +   +L ++EI  +++A
Sbjct: 413 NAKEREIFLVEGESAGGSAKLGRNRFNQAILPLKGKIVNAEKTKLIDLLKNEEIIAIVSA 472

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTG+G  +F++  L Y KIIIMTDAD DGAHI+ L+LTF FR M  LI NG +YI +PP
Sbjct: 473 LGTGLG-VNFNLKNLNYDKIIIMTDADTDGAHIQILILTFIFRYMKPLIENGHVYIAQPP 531

Query: 541 LYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDALK 596
           LY +  + K ++Y  DE+ L   L  +             G ++   L            
Sbjct: 532 LYKLSYKNKDVRYAWDEKELAKLLAKKP--NAQIQRYKGLGEMNAAQLWETTMDPKTRSL 589

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
           +   I D      + F      + +     ++ ++ SL     +RL    E
Sbjct: 590 VKVSINDIAIVERRIFTLMGDKTDIRKTWIEKNVDFSLEDSFLDRLKIEDE 640



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 50/68 (73%), Gaps = 3/68 (4%)

Query: 730 GRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD-ASQADDLFSRLMGDEVEP 787
            +K    +QRYKGLGEMNA+QLWETT++P TRSL++V I D A     +F+ LMGD+ + 
Sbjct: 556 AKKPNAQIQRYKGLGEMNAAQLWETTMDPKTRSLVKVSINDIAIVERRIFT-LMGDKTDI 614

Query: 788 RREFIQEN 795
           R+ +I++N
Sbjct: 615 RKTWIEKN 622


>gi|330994149|ref|ZP_08318077.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1]
 gi|329758616|gb|EGG75132.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1]
          Length = 680

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/575 (39%), Positives = 330/575 (57%), Gaps = 20/575 (3%)

Query: 2   SDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           +DN +N   +YDA +I++L+GL+ V++RP MYIG TD E+  HH+  E+LDNA+DE++ G
Sbjct: 27  ADNAKNGPDTYDASAIEVLEGLEPVRRRPGMYIGGTD-ETAYHHLASEILDNAMDEAVAG 85

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           +A  I V+L      T+ DNGRGIP D H      SA EVI+T LHAGGKF+ K+Y  SG
Sbjct: 86  HATTIDVSLEAGDCLTIRDNGRGIPVDPHPRFPDRSALEVILTTLHAGGKFSGKAYATSG 145

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG SVVNAL+S +++ I R+  ++   +  G   + +   G   N  GT++ F P 
Sbjct: 146 GLHGVGSSVVNALASRMEVEIARDRELWRQVYERGHPLSGVEKIGPVNNRRGTQIRFTPD 205

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEAFV 233
            +IF    F+   L    R  +FL   V I         K    P E  + + GG+   +
Sbjct: 206 PEIFGRLHFSPARLYRLCRSKAFLFRGVTIRWSCDPSLIKGDDIPAEAVLHFPGGLADSL 265

Query: 234 SYLDRHKKPLMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
                 K  L+                 D   ++ A+ + +     +  + N IP  +GG
Sbjct: 266 RDELGDKAALLTDLWAGDADLPTAPDGSDTGRMEWAIAFLEQGTAALASYCNTIPTPNGG 325

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH +G R+AL + + ++ E+    +    +   DD      + LS+ + DP+F  QTKEK
Sbjct: 326 THETGFRNALLKGLRNWGEQRANKRAASINA--DDIMGCIAAKLSVFIRDPQFQGQTKEK 383

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L SSE   +VE+ + D    WL  +P +A  ++  V++ +  R   +  ++ T RK    
Sbjct: 384 LTSSEASKLVETALRDRFDHWLAANPPQADNLLAFVVERAEERLRRKEQKE-TPRKSATR 442

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              LPGKL DC+  +  ++E+FLVEGDSAGGSAKQ R+RE QA+LPLRGKILNV  A  +
Sbjct: 443 RLRLPGKLTDCTRENAAETEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTE 502

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           K+  +QE+  L+ ALG G+G+  FD  KLRY +IIIMTDADVDGAHI +LL+TFF+R++P
Sbjct: 503 KLRGNQELRDLVEALGCGMGER-FDATKLRYGRIIIMTDADVDGAHIASLLMTFFYRELP 561

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
            LI  G LY+ +PPLY +T+G    Y  D+   E 
Sbjct: 562 GLIRGGHLYLAQPPLYRLTQGGRSIYAMDDADRER 596



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI---TDASQADDLFSRLMGDEVEPRRE 790
           + + R+KGLGEM    L +TT++P  R+LL+V I    D +   +    LMG + E R  
Sbjct: 608 VEVSRFKGLGEMPPGDLKQTTMDPRHRTLLKV-ITPPEDRALTLERVEHLMGRKAELRFR 666

Query: 791 FIQENSLPS-ALDI 803
           FIQ+++     LD+
Sbjct: 667 FIQDHARQVDNLDV 680


>gi|218281306|ref|ZP_03487794.1| hypothetical protein EUBIFOR_00359 [Eubacterium biforme DSM 3989]
 gi|218217491|gb|EEC91029.1| hypothetical protein EUBIFOR_00359 [Eubacterium biforme DSM 3989]
          Length = 641

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 247/660 (37%), Positives = 362/660 (54%), Gaps = 28/660 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    YD  SI IL+GLDAV+KRP MYIG TD   GLHH+++E++DNAIDE+L GY + I
Sbjct: 1   MPKQQYDESSIVILEGLDAVRKRPGMYIGSTDS-KGLHHLVWEIVDNAIDEALNGYGNEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF-NQKSYKVSGGLHGV 123
            +TL  DGS TV D+GRG+P   H + G+S  +VI T LHAGGKF +   Y  +GGLHGV
Sbjct: 60  AITLEKDGSVTVEDHGRGMPVGKH-KSGVSTLQVIFTILHAGGKFTSHGGYTSAGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGN-IYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           G SVVNAL +W K+ +  +G  I+ M+F + G     L   G   N TG+ VTF P   I
Sbjct: 119 GASVVNALCTWCKVTVH-DGKDIWSMTFEDGGSKIGKLEKVGKT-NRTGSTVTFKPDPTI 176

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F+Y T+  R +E +FL   +++ + DKR  E  E+   Y+ G++AF+  +++   
Sbjct: 177 FKTVHFSYSTICERAQEDAFLLKGLKMIVRDKRKEEK-EVIYQYEDGLKAFIDEVNQDHT 235

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+    I  +G  + I ++   ++ D Y EN+  FTN +  +DGG+H +G + A T+   
Sbjct: 236 PMH-DSISFRGESNQIVVEGCFQYTDEYQENIFSFTNMVRTRDGGSHETGAKQAFTKVFN 294

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359
            Y  K+   K+  +   G+D REG T V+++ +P+   +F  QTKEKL S E +   E+ 
Sbjct: 295 EYARKNGFLKEKDKGFDGNDVREGLTLVINLTIPEDYLQFEGQTKEKLGSPEAKPATETV 354

Query: 360 VNDGLSAWLEEHPLEA----KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V++ L  +LEE+   A    + I+K     +  R A    R+   +     + S  GKLA
Sbjct: 355 VSENLRYFLEENKEIANALVRKIIKAAQARNAARKARADIRNGKGKNRSERVLS--GKLA 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
               +D ++ EL+LVEGDSAGGSAKQGR  + QAILPLRGK+LN E+A  + +  ++E+ 
Sbjct: 413 SAQSKDARRKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASLEAIEKNEELN 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           T+I ALG G+G + F      Y+K+IIMTDAD DGAHI+ LLLTFF+R M  LI +  LY
Sbjct: 473 TIIHALGAGVGAN-FTAEDSNYYKVIIMTDADDDGAHIQNLLLTFFYRYMRELITHEMLY 531

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           I  PPLY I +G    Y+   E L++          I  +               ++   
Sbjct: 532 IALPPLYRIAKGGKEYYLYTNEELDEKKAELKNGYTITRYKGLGE----------MNATQ 581

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
             D  +           IE A+++     E   +      + + + + F  E   +    
Sbjct: 582 LWDTTMNPESRTLLCVTIENAMMAEKRVTELMGDKAELRRNWIEDNVVFTLEDDYREVSA 641



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E      +    +L   ++ +      ++    +N   ++           +    
Sbjct: 454 VLNTEKASLEAIEKNEELNTIIHALGAGVGANFTAEDSNYYKVIIMTDADDDGAHIQNLL 513

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +    + I    +      +  +   G +  +      LD   +  + G ++ RYK
Sbjct: 514 LTFFYRYMRELITHEMLYIALPPLYRIAKGGKEYYLYTNEE-LDEKKAELKNGYTITRYK 572

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           GLGEMNA+QLW+TT+NP++R+LL V I +A  A+   + LMGD+ E RR +I++N
Sbjct: 573 GLGEMNATQLWDTTMNPESRTLLCVTIENAMMAEKRVTELMGDKAELRRNWIEDN 627


>gi|311742665|ref|ZP_07716474.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium
           marinum DSM 15272]
 gi|311314293|gb|EFQ84201.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium
           marinum DSM 15272]
          Length = 690

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 241/672 (35%), Positives = 351/672 (52%), Gaps = 33/672 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+YDA ++ +L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+L G+   I V 
Sbjct: 22  STYDARNLLVLEGLEAVRKRPGMYIGSTD-TRGLMHCVWEIIDNAVDEALGGHCHHIRVV 80

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V D+GRGIP D  ++ G++  EV+ T+LHAGGKF   SY  +GGLHGVG SV
Sbjct: 81  LHADGSVEVHDDGRGIPVDTERKTGLTGVEVVFTKLHAGGKFGGGSYVATGGLHGVGASV 140

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSV-Q 185
           VNALS  L++ + + G  + M+F  G  + PL   G  A   TGT + +     IF    
Sbjct: 141 VNALSERLEVEVDKGGATWAMAFTRGAPEGPLTKIGKVAKTRTGTRIRYWADPQIFIKGA 200

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK----- 240
           +F+Y  L  R R+ SFL   ++I + D+R+ E RE T  + GGI  F  +L   +     
Sbjct: 201 EFSYTDLVTRSRQTSFLVPGLEIVIRDERTDEVREETFLHSGGIAEFTEFLATDEPVTPV 260

Query: 241 -----KPLMQSPIRIQGSRDNIS---------IDLAMRWNDGYHENVLCFTNNIPQKDGG 286
                +      + +     ++S         +D+A+RW  GY  +V  F N I    GG
Sbjct: 261 LRLQGEDTFTETVPVLDELGHMSPQDVERSLGVDVALRWGTGYETDVRSFVNIISTPKGG 320

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH+ G    +TR     ++ +   K   + V  DD  EG T+V+++++ +P+F  QTKE 
Sbjct: 321 THVQGFERGMTRTFNDVLKTTRLLKSGDQDVTKDDVLEGLTAVVTVRLAEPQFEGQTKEV 380

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKI----IVKKVLDASMVRDAARRARDLTRRK 402
           L +  V  +V   V+  L  +L       K     +++KV+ AS  R  AR+ RD  RRK
Sbjct: 381 LGTPAVTKIVNQVVSRELKTFLASTKAADKAKARLVMEKVVAASKTRLMARQQRDTQRRK 440

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+ ++LP KLADC   D  +SELF+VEGDSA G+AK  R    QA+LP+RGKILNV++
Sbjct: 441 NALESSALPAKLADCRSGDVDRSELFIVEGDSALGTAKSARDSGFQALLPVRGKILNVQK 500

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A    ML + E  ++I  +G G G+  FD++  RY +II M DAD DGAHIR LL T FF
Sbjct: 501 ASIGDMLKNAECSSIIQVVGAGSGRT-FDLDAARYGRIIFMADADSDGAHIRCLLATLFF 559

Query: 523 RQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           R M  L+  G +Y   PPL+ I     +    +YV      E       L+++   + D 
Sbjct: 560 RYMRPLVEAGRVYTAVPPLHRIELSAPKKGQDKYVYTYSDAELQRTLAQLTKKGARWKDP 619

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                     +    A                   E+A  S VF      E+       +
Sbjct: 620 VQRYKGLGEMDADQLAETTMDPRHRTLRRLTVDDAEEA--SAVFELLMGNEVAPRKEFIV 677

Query: 639 ANRLNFIAEKSE 650
               +F A++ +
Sbjct: 678 QGAYDFDADRID 689



 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 4/90 (4%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+  + +KG      +QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 591 DKYVYTYSDAELQRTLAQLTKKGARWKDPVQRYKGLGEMDADQLAETTMDPRHRTLRRLT 650

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENS 796
           + DA +A  +F  LMG+EV PR+EFI + +
Sbjct: 651 VDDAEEASAVFELLMGNEVAPRKEFIVQGA 680


>gi|15828843|ref|NP_326203.1| topoisomerase IV subunit B [Mycoplasma pulmonis UAB CTIP]
 gi|14089786|emb|CAC13545.1| TOPOISOMERASE IV SUBUNIT B [Mycoplasma pulmonis]
          Length = 642

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 264/661 (39%), Positives = 379/661 (57%), Gaps = 29/661 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y  D +++LKGL+AV+KRP MYIG TD  +GLHH+++E+ DNA+DE+L GYA II V+
Sbjct: 2   SKYTVDDLKMLKGLEAVRKRPGMYIGSTD-INGLHHLVWEIFDNAVDEALAGYASIIKVS 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  + S  V DNGRGIP + H   G S  E++ T LHAGGKF++ +Y+ SGGLHGVG SV
Sbjct: 61  LTKNQSIRVEDNGRGIPVEKHSS-GKSGVELVFTELHAGGKFSEGAYRTSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L + + ++G  Y   F NG          G + N  GT V FLP+ +IF    
Sbjct: 120 VNALSKELTVSVFKDGFEYRTKFENGDTIVEKTHKVGPS-NKKGTIVEFLPNYEIFKRAQ 178

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F  +T+  RLRE SFL  +++I   D+   +    T  Y+ GIEAFV +++  KK L   
Sbjct: 179 FLPETISERLREASFLIPNLKIVFYDEN--QNLRETFNYENGIEAFVDFINNGKKTLN-K 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +    ++ NI +  A ++ND Y E ++ F NN+  +DGGTH +  +SA T+ +  Y  +
Sbjct: 236 VVSFSETKKNIELSCAFQYNDDYSETIISFVNNVKTRDGGTHEAAFKSAFTKTLNDYAIE 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364
               K  K +  G D REG T+++S+K+P+    F  QTK+KL + E ++VVE  V+  L
Sbjct: 296 KKILKGGK-TFEGSDFREGLTAIISLKIPESILEFVGQTKDKLGTIEAKNVVEEIVSQNL 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDP 422
             WL E   EA+ +  K   A   R AAR+AR+   T +  + +   L GKL     ++P
Sbjct: 355 KYWLNEKKQEAEKVFNKFKKAYEARIAARKARNEARTLKSKMKETKILSGKLTPAQSKNP 414

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           K++E+FLVEGDSAGGSAK GR+R  QAILPLRGK++N E++R   +L ++EI T+I AL 
Sbjct: 415 KENEIFLVEGDSAGGSAKSGRNRRFQAILPLRGKVINTEKSRLIDILKNEEISTIINALN 474

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG+G+D F+I  L+YHKIIIMTDAD DGAHI+ LLLTFFFR M  LI  G +Y+  PPL+
Sbjct: 475 TGVGED-FEIKNLKYHKIIIMTDADTDGAHIQVLLLTFFFRYMHELIEKGMVYVALPPLF 533

Query: 543 GI----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
            +     +   + Y  DE  L++ + N+S+           G ++ + L          +
Sbjct: 534 KVTFKNDKKNKIAYAWDENELKEIVKNKSVE---IQRYKGLGEMNADQLW---------E 581

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
             +     +  K  I+ A I          E        +   + F  E   +   G ++
Sbjct: 582 TTMNPETRSLVKITIQDAAIVERRVSTLMGENVEIRKEWINKNVKFTLEDDFQISTGELS 641

Query: 659 N 659
            
Sbjct: 642 E 642



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 5/256 (1%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
              +    +    +   E   +   + E   L        SKN   N I           
Sbjct: 371 KFKKAYEARIAARKARNEARTLKSKMKETKILSGKLTPAQSKNPKENEIFLVEGDSAGGS 430

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                + +      +   V N E  + I++    +++  +N +     + +         
Sbjct: 431 AKSGRNRRFQAILPLRGKVINTEKSRLIDILKNEEISTIINALNTGVGEDFEIKNLKYHK 490

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           ++           +      F F   ++ I    +      +  +    DK         
Sbjct: 491 IIIMTDADTDGAHIQVLLLTFFFRYMHELIEKGMVYVALPPLFKVTFKNDKK--NKIAYA 548

Query: 723 LDT--IFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            D   +  I + K + +QRYKGLGEMNA QLWETT+NP+TRSL+++ I DA+  +   S 
Sbjct: 549 WDENELKEIVKNKSVEIQRYKGLGEMNADQLWETTMNPETRSLVKITIQDAAIVERRVST 608

Query: 780 LMGDEVEPRREFIQEN 795
           LMG+ VE R+E+I +N
Sbjct: 609 LMGENVEIRKEWINKN 624


>gi|19909595|dbj|BAB86993.1| DNA gyrase subunit B [Halomonas aquamarina]
          Length = 458

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 270/460 (58%), Positives = 346/460 (75%), Gaps = 3/460 (0%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
           +GLHHM++E++DN+IDE+L G+   I V ++ D S TVSDNGRGIPT+LH+ EG+SAAEV
Sbjct: 1   TGLHHMVFELVDNSIDEALAGHCSEIRVVIHADESVTVSDNGRGIPTELHEGEGVSAAEV 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R+G ++E  + +G+   P
Sbjct: 61  IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELRLTIWRQGEVFEQIYHHGVPQAP 120

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L V G     +GT V F PS   F+  +F+YD L  RLRELSFLNS V I L+D+RS + 
Sbjct: 121 LSVVGKTE-KSGTRVHFRPSPATFANIEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE 179

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y+GG++AFV +L+++K  L        G  D + +++AM+W+D + EN+ C+TN
Sbjct: 180 --ELFHYEGGLKAFVDHLNKNKTVLNPVFHFNAGRDDGVEVEVAMQWSDAFTENIFCYTN 237

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL   R+ALTR +  Y+E     KK K +  GDD REG T+++S+K+PDP+
Sbjct: 238 NIPQRDGGTHLGRFRAALTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPK 297

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEV++ VE  +    + +L E P EAK IV K+LDA+  R+AAR+ARD+
Sbjct: 298 FSSQTKDKLVSSEVKTAVEQEMGRLFADYLIEKPNEAKAIVNKMLDAARAREAARKARDM 357

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKG LDIA LPGKLADC E+DP +SEL+LVEGDSAGGSAKQGR R  QAILPL+GKIL
Sbjct: 358 TRRKGALDIAGLPGKLADCQEKDPSQSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKIL 417

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           NVE+ARFDKMLSS E+GTLITALG GIG++ F+ +KLRYH
Sbjct: 418 NVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYH 457


>gi|241204755|ref|YP_002975851.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858645|gb|ACS56312.1| DNA topoisomerase IV, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 699

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 227/598 (37%), Positives = 339/598 (56%), Gaps = 18/598 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            +  Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DNA+DE++ G+A+ I 
Sbjct: 56  NSDDYGASSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNAMDEAVAGHANFIE 114

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L+++G  TVSDNGRGIP + H +  G S  EVIMT+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 115 VYLDLEGYLTVSDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVG 174

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ + R   +Y   F  G+    L   G   N  GT V F P   IF  
Sbjct: 175 VSVVNALSDDLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQIFGD 234

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237
              F+   +    R  ++L   V+I    +       S  P +    + GG++ ++    
Sbjct: 235 HMKFDAARVFRMARSKAYLFGGVEIRWSCESGVLPEGSEVPDKAVFHFPGGLKDYLQATM 294

Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             +  + +     +  +   + S++ A+ W  G    V  + N IP  +GGTH +GLR A
Sbjct: 295 GKEFTVTREIFAGKTEKVSGHGSMEWAITWYGG-DPQVHSYCNTIPTTEGGTHEAGLRIA 353

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT+ + +Y E +   +  +  +  DD       +LS+ + +P F  QTK++L + E + +
Sbjct: 354 LTKGLKAYAELTQNKRAAQ--ITTDDVMISAVGMLSVFIREPEFVGQTKDRLATVEAQRI 411

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ + D    +L ++P E+  ++  V++        RR      RK  +    LPGKLA
Sbjct: 412 VENALRDPFDHYLADNPNESAKLLDWVIER-AEERLRRRKEKEVNRKTAVRKLRLPGKLA 470

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS+     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ ++Q++ 
Sbjct: 471 DCSQNTAVGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLA 530

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L+ ALG G  +  +    LRY +II+MTDADVDGAHI +LL+TFF+++MP L+  G L+
Sbjct: 531 DLVQALGCGT-RSKYRDEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLF 589

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           +  PPLY IT+G    Y +D+    + +  +   +        KG+     +   + +
Sbjct: 590 LAVPPLYKITQGAKSAYARDDNHRAELMQTEFKGKAKVEISRFKGL--GEMMPAQLKE 645



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +    +LA+ +  +   +   +       + ++      V    +    
Sbjct: 512 ILNVASAGREKLGANQQLADLVQALGCGTRSKYRDEDLRYERIIVMTDADVDGAHIASLL 571

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP---CSLLDTIFSIGRKGISMQ 737
             F +    + +    +      +  +                 L+ T F  G+  + + 
Sbjct: 572 ITFFYQEMPELVRGGHLFLAVPPLYKITQGAKSAYARDDNHRAELMQTEFK-GKAKVEIS 630

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM  +QL ETT++P  R+LL+V I   D          LMG + E R  FIQ+ 
Sbjct: 631 RFKGLGEMMPAQLKETTMDPSKRTLLKVLIDEVDFEGTRAAVDDLMGTKPEARFRFIQDR 690

Query: 796 SLPS-ALDI 803
           +  +  LDI
Sbjct: 691 AAFAENLDI 699


>gi|103486580|ref|YP_616141.1| DNA topoisomerase IV subunit B [Sphingopyxis alaskensis RB2256]
 gi|98976657|gb|ABF52808.1| DNA topoisomerase IV, B subunit [Sphingopyxis alaskensis RB2256]
          Length = 659

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/651 (36%), Positives = 353/651 (54%), Gaps = 24/651 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + SY+A  I++L+GL+ V++RP MYIG TD E  LHH+  EV+DN++DE++ G+A  I 
Sbjct: 12  ASDSYNASQIEVLEGLEPVRRRPGMYIGGTD-ERALHHLAAEVIDNSMDEAVAGHATRIE 70

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           VTL++    T+ DNGRG+P D H +  G SA EVIMT LH+GGKF  K+Y  SGGLHGVG
Sbjct: 71  VTLDVGNRLTIVDNGRGMPVDPHPKFPGKSALEVIMTMLHSGGKFEGKAYATSGGLHGVG 130

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS   ++ + R   +Y   F  G    PL   G+  N  GT V+F+P  +IF  
Sbjct: 131 VSVVNALSVETEIEVARAKQLYRQRFARGAPLGPLEELGATPNRRGTSVSFIPDPEIFGE 190

Query: 185 Q-DFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRH 239
              F    L    R  ++L + V+I             P E    + GG+   +      
Sbjct: 191 HGRFKPQRLYRLARSKAYLFAGVEIRWKCAPALIGDDTPSEAVFQFPGGLADHLKEQIGA 250

Query: 240 KKPLMQSPIRIQGS------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++     P   +        R   +I   +  +  Y      + N IP   GGTH +GLR
Sbjct: 251 RECATADPFVGRQDFPGDQGRAEWAIAWPLWSDGSYS----WYCNTIPTPAGGTHEAGLR 306

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT+ + ++ E     K  +  +  +D   G   +LS+ + DP+F SQTK++L S E  
Sbjct: 307 AALTKGLRAFGELIGQKKAAQ--ITAEDVFNGSEMMLSVFIRDPQFQSQTKDRLSSPEAA 364

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL-DIASLPG 412
            + E+ V D    +L ++    + ++  VLD    R   +  R++ R+         LPG
Sbjct: 365 RLTENAVRDHFDHFLSDNMDRGRALLGLVLDRMDERLKRKAEREVKRKTATSGRKLRLPG 424

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DC+   P+ +ELF+VEGDSAGGSAKQ R R+ QAILP+RGKILNV  A  DK+ ++Q
Sbjct: 425 KLTDCANDGPEGTELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASASADKIRANQ 484

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI  L  ALG G+ +D  D ++LRY KI+IMTDADVDGAHI TLL+TFFF++MP ++ NG
Sbjct: 485 EIADLALALGCGMRKDC-DADRLRYEKIVIMTDADVDGAHIATLLMTFFFQEMPDIVRNG 543

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL-FCDSKGVISKNDLRNFI 591
            +Y+ +PPLY +T G    Y +D+    +        +++E+      G ++ N L+   
Sbjct: 544 HVYLAQPPLYRLTAGGLSAYARDDAHRAELEATLFKGKKVEVGRFKGLGEMNPNQLKETT 603

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLAN 640
            D      L       +++  + + ++  +   N E   +   + A+ L  
Sbjct: 604 MDPATRSLLRVTLPQEYEERHLVKDLVDRLMGRNPEHRFQFIQANAASLDE 654



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK----ITDASQADDLFS 778
           L+     G+K + + R+KGLGEMN +QL ETT++P TRSLLRV       +     DL  
Sbjct: 573 LEATLFKGKK-VEVGRFKGLGEMNPNQLKETTMDPATRSLLRVTLPQEYEERHLVKDLVD 631

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
           RLMG   E R +FIQ N+  ++LD
Sbjct: 632 RLMGRNPEHRFQFIQANA--ASLD 653


>gi|98990344|gb|ABF60241.1| DNA gyrase subunit B [Entomoplasma lucivorax]
          Length = 557

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 243/537 (45%), Positives = 348/537 (64%), Gaps = 11/537 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T   +GLHH+++E+LDN+IDE + GYA  + VT+  +    V D+GRGIP  ++++ G
Sbjct: 1   GSTSK-TGLHHLVWEILDNSIDEVMAGYAQHVKVTITKENEIVVQDDGRGIPVGINQDTG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
             A E++ T+LHAGGKF+  SYKVSGGLHGVG SVVNALS ++ + I+REG  + M F +
Sbjct: 60  RPAVELVFTQLHAGGKFDSDSYKVSGGLHGVGASVVNALSLYVDVVIEREGKKFHMLFSD 119

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISL 210
            G     L + G + N TGT V F P  +IF     F+Y T+++++++L++LN  ++ISL
Sbjct: 120 GGTAQTELAIIGES-NKTGTTVRFKPDPEIFKETVTFDYTTIRNKVKQLAYLNKGLKISL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ----GSRDNISIDLAMRWN 266
            D+R  +   +   +  GI  ++   +  K  +  +   +     G   +I +++A+++N
Sbjct: 179 NDERINKS--VDFHFPNGIVDYIREENETKAKINPTIFYVDGKEAGDEGDIEVEIALQYN 236

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
             Y+EN++ F NNI   +GG H  GLR AL R I  Y EK     K  +    DD +EG 
Sbjct: 237 SEYNENLITFVNNINTHEGGAHEDGLRQALVRIINRYAEKVAQQNKQPQKFSWDDIKEGM 296

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
             +LSI+  DP+F  QTK KL + + + VV++ +      +L E+P +AK I+ K ++A 
Sbjct: 297 ICILSIRHTDPQFEGQTKTKLANPDAKRVVDAILGKSFEEFLFENPNDAKAILDKNVNAQ 356

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AA+RAR+ TRRKG LD  SLPGKLADC   D   SEL+LVEGDSAGGSAK GR+R 
Sbjct: 357 KARIAAQRAREETRRKGALDTFSLPGKLADCESNDSSISELYLVEGDSAGGSAKTGRNRH 416

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPLRGK+LNVER +  +  ++ EI +++TA+GTGI +D  D++K+RY KI+IMTDA
Sbjct: 417 FQAILPLRGKVLNVERVQEVRAFANTEIKSIVTAVGTGIKEDI-DLSKIRYGKIVIMTDA 475

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           DVDGAHIRTLLLTFF+R M  L+ NG +YI +PPL+ I  GK + Y   ++ LE+  
Sbjct: 476 DVDGAHIRTLLLTFFYRYMKQLVQNGNIYIAQPPLFKIEAGKKVAYAYSDQELEELK 532



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             H +  +   +   V N E  QE+     +++ + +  +    ++    S      +V 
Sbjct: 414 NRHFQAIL--PLRGKVLNVERVQEVRAFANTEIKSIVTAVGTGIKEDIDLSKIRYGKIVI 471

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
                V    +      F +    + + +  I       L  I  G K+        L+ 
Sbjct: 472 MTDADVDGAHIRTLLLTFFYRYMKQLVQNGNIY-IAQPPLFKIEAGKKVAYAYSDQELEE 530

Query: 726 IFS---IGRKGISMQRYKGLGEMNASQL 750
           + +    G++  ++QRYKGLGEM+  QL
Sbjct: 531 LKNGDFSGQR-FTIQRYKGLGEMDPMQL 557


>gi|153873771|ref|ZP_02002242.1| Gram negative topoisomerase IV, subunit B [Beggiatoa sp. PS]
 gi|152069763|gb|EDN67758.1| Gram negative topoisomerase IV, subunit B [Beggiatoa sp. PS]
          Length = 632

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 324/574 (56%), Gaps = 15/574 (2%)

Query: 1   MSDNI--QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+        SYDA  I++L GL+ V+KRP MY   TD     +H+  EV+DN++DE++ 
Sbjct: 1   MARKNYDAAKSYDAADIEVLTGLEPVRKRPGMY---TDTTRP-NHLAQEVVDNSVDEAIA 56

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GYA+ I V L+ DGS +V DNGRG+P D H EEGIS  EVI+TRLHAGGKF+ K+Y+ SG
Sbjct: 57  GYANQIDVVLHADGSLSVRDNGRGMPVDKHPEEGISGVEVILTRLHAGGKFSNKNYQFSG 116

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLP 177
           GLHGVGVSVVNALSS L++ IKR+  +Y+MSF +G   + L V G+    +TGT + F  
Sbjct: 117 GLHGVGVSVVNALSSHLEVNIKRDSQLYQMSFADGEKTSELRVIGNVGKRNTGTMLRFWA 176

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           +   F    F    L H LR  + L + ++++  D+ + E  +     K G+  ++    
Sbjct: 177 NPKYFDSPRFLVPRLMHVLRAKAVLCAGLRLTFEDENTGEKFQWYY--KDGLTTYLLDNL 234

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
                L + P          ++D A+ W          + N IP   GGTH++GLRS L 
Sbjct: 235 GDVDSLPEEPFVGHFEGTTEAVDYALMWLSEGELLTESYVNLIPTTQGGTHVNGLRSGLL 294

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + +      +    +  +D  E  T +LS+K+ +P+FS QTKE+L S    + V 
Sbjct: 295 DAMREFCDYRNLLPRG-VKLAPEDVWERCTYILSVKLEEPQFSGQTKERLSSRACATFVS 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL +H    + I + V+  +       RA     RK   +  +LPGKLADC
Sbjct: 354 GVVRDAFSLWLNQHVEIGEKIAELVISHAQ---KRLRADKKVVRKKATNGPTLPGKLADC 410

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++ELFLVEGDSAGGS +Q R R  QAI+PLRGKILN       ++L+SQE+  +
Sbjct: 411 SLQDVSRTELFLVEGDSAGGSCRQARDRTFQAIMPLRGKILNTWEVDTSQVLASQEVHDI 470

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ALG   G D  ++ +LRY K+ I+ DAD DGAHI TLL   F +  P+L+  G +YI 
Sbjct: 471 AVALGIDPGID--NLEELRYGKVCILADADSDGAHIATLLCALFVKHFPTLVEQGHIYIA 528

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
            PPLY I  G ++ Y  +++  +  L   +  ++
Sbjct: 529 TPPLYRIDVGNTVYYALNDDEKQGILDRIAAEKK 562



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +   T+   + + +K  I      LD I +  ++G +++QR+KGLGEMN  QL ETT++P
Sbjct: 536 DVGNTVYYALNDDEKQGI------LDRIAAEKKRGTVNVQRFKGLGEMNPLQLRETTMSP 589

Query: 758 DTRSLLRVKITDASQADDLFSRL 780
           DTR L+++ + +  + +++ + L
Sbjct: 590 DTRRLIQLTLNEVEETENMMNML 612


>gi|161833805|ref|YP_001598001.1| DNA gyrase B subunit [Candidatus Sulcia muelleri GWSS]
 gi|152206295|gb|ABS30605.1| DNA gyrase B subunit [Candidatus Sulcia muelleri GWSS]
          Length = 625

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 249/584 (42%), Positives = 354/584 (60%), Gaps = 34/584 (5%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGD  G  GLHHM+YEV++N+IDESL G+ D I VT++ D S TV DNGRGIP +LH+
Sbjct: 1   MYIGDI-GIKGLHHMVYEVINNSIDESLSGFCDKIYVTIHKDNSITVLDNGRGIPVELHE 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           +EGISA E++MT++ AGGKF+  SYK SGGLHGVG+S VNALSS L  +I R G IY   
Sbjct: 60  KEGISALELVMTKIGAGGKFDNNSYKFSGGLHGVGISCVNALSSKLIAKIFRNGKIYVQK 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           +  G+  + L + G + N  GT++TF     IF    +NY  L++RLRELSFLN  + IS
Sbjct: 120 YSRGVPISKLEIIGDSKNQRGTQITFKADKFIFKKISYNYSILKNRLRELSFLNKGLSIS 179

Query: 210 LIDKR----SPEPREITMFYKGGIEAFVSYLDRHKK----------PLMQSPIRIQGSRD 255
           L+D+R    +   ++   F K GI+ F+ +++++K+            ++    ++ ++ 
Sbjct: 180 LLDERKIYKTGFFKKNHFFSKKGIKEFLMFIEKNKESIIENYKSKKSRIKDFFYLKKNKK 239

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           NI+++L MR+N  Y E +  + NNI   +GGTH+SGL+ ALT+    Y  K+   +  K 
Sbjct: 240 NINLELVMRYNSSYKEKIFSYVNNINTSEGGTHISGLKKALTKTFKKYFSKNR--RFKKL 297

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            + G    EG T++L+IK+ +P+F  QTK KLV+ E+  +VE  V    +++LE++PL  
Sbjct: 298 KISGGYFIEGLTAILTIKIINPKFEGQTKNKLVNYEIIGLVEKIVKKKFNSFLEKNPLYL 357

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K I+ KV  ++  R A +R R+L + K      +LP KLADCS ++P   EL+LVEGDSA
Sbjct: 358 KKILNKVFLSAKARQAYKRVRELIKTKTS-KKNNLPIKLADCSSKNPNLCELYLVEGDSA 416

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GG+AKQGR R+ QA+LPLRGKILNVE++  +K+  ++EI  +  ALG       F   K 
Sbjct: 417 GGTAKQGRERKFQAVLPLRGKILNVEKSIKNKIFENEEIKNIFLALGV------FFFKKK 470

Query: 496 RYHKI----------IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
              K+          IIMTDAD+DG+HI TL+LTFFFR M  LI  G++YI  PPL+ I 
Sbjct: 471 NIIKLNIKKIRYKKIIIMTDADIDGSHISTLVLTFFFRYMRILIEKGYIYIATPPLFLIK 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             K   Y  + +  E  L    L           G ++   L  
Sbjct: 531 NYKKKIYAWNYKEREKILKKSLLKGISIQRYKGLGEMNAEQLWE 574



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIG 730
               L  +  F    +Y RI   +      T    +    K KI           +    
Sbjct: 497 HISTLVLTFFF----RYMRILIEKGYIYIATPPLFLIKNYKKKIYAWNYKEREKILKKSL 552

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            KGIS+QRYKGLGEMNA QLWETT+NP  R+L +V I +   A+ +FS LMG+ V PR++
Sbjct: 553 LKGISIQRYKGLGEMNAEQLWETTMNPINRTLRKVTIHNIKIANKIFSMLMGENVLPRKQ 612

Query: 791 FIQENSLPSALD 802
           FI+ N+L + +D
Sbjct: 613 FIETNALFAKID 624


>gi|68138580|gb|AAY85987.1| GyrB [Burkholderia cepacia]
          Length = 635

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 282/639 (44%), Positives = 398/639 (62%), Gaps = 20/639 (3%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAG 166
           GLHGVGVS VNALSS L+L ++R+G    M F  G+              +P++VTG   
Sbjct: 1   GLHGVGVSCVNALSSGLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
              GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + 
Sbjct: 61  I-RGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFA 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGG
Sbjct: 118 GGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+K
Sbjct: 178 THLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD
Sbjct: 238 LVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+D
Sbjct: 298 GVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           K+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP
Sbjct: 358 KLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMP 417

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + 
Sbjct: 418 DMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDA 477

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
           L       L    +I+     +D   +E AV+ GV    S++E   + A  L   L+  A
Sbjct: 478 LGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEA 536

Query: 647 EKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
            K+E      +        + V+R   G     V++     +   +     +N  +    
Sbjct: 537 LKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIG 596

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
               +      + +    S +  + +   + +S QRYKG
Sbjct: 597 EGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 635


>gi|19909539|dbj|BAB86965.1| DNA gyrase subunit B [Caulobacter fusiformis]
          Length = 474

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 306/474 (64%), Positives = 375/474 (79%), Gaps = 6/474 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  SGLHHM+YEV+DNAIDE+L G+A  + V LN DGS TVSD+GRGIPTD+H+ EG+S
Sbjct: 1   TDDGSGLHHMVYEVVDNAIDEALAGWATRVEVILNADGSATVSDDGRGIPTDIHEGEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS +L L+I R G  +EM F  G 
Sbjct: 61  AAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDYLLLKIHRNGKQHEMRFERGD 120

Query: 155 LDNPLVVTGSAGND------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
               L +TG +         TGT VTF PS + FS  +F+  TL+HRLREL+FLNS V I
Sbjct: 121 AVTSLAITGDSPKRDNGEPLTGTIVTFFPSLETFSHINFDRKTLEHRLRELAFLNSGVTI 180

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
              D R  EP E  M Y+GGIEAFV +LD+ K PL+++P+ I+G R+ + +DLA+ WND 
Sbjct: 181 YFRDLRDAEPYEEIMHYEGGIEAFVRHLDKAKTPLVKTPMIIRGQREKVQVDLALWWNDS 240

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           YHE +LCFTNNIPQ+DGGTHL+  R+ALTR + +Y+E S  +KK+K SV G+D REG T 
Sbjct: 241 YHETMLCFTNNIPQRDGGTHLAAFRAALTRVVGNYIESSGMAKKEKVSVTGEDAREGLTC 300

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VLS+K+PDP+FSSQTK+KLVSSEVR  VE  V +GL+ W EEHP+EA+I+V KV++A+  
Sbjct: 301 VLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVQEGLATWFEEHPVEARILVGKVVEAAAA 360

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R+AAR+AR+LTRRK  LDI +LPGKLADC ERDP KSELFLVEGDSAGGSAKQ R+RENQ
Sbjct: 361 REAARKARELTRRKSALDITNLPGKLADCQERDPAKSELFLVEGDSAGGSAKQARNRENQ 420

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           A+LPLRGKILNVERARFD+ML S ++GTLITALG GIG+D F+I K+RYH+I+I
Sbjct: 421 AVLPLRGKILNVERARFDRMLGSDQVGTLITALGAGIGRDDFNIEKMRYHRIVI 474


>gi|227326766|ref|ZP_03830790.1| DNA gyrase subunit B [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 479

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 220/478 (46%), Positives = 302/478 (63%), Gaps = 8/478 (1%)

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++VVES +N+ L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 2   VPDPKFSSQTKDKLVSSEVKTVVESLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAAR 61

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +ARD+TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 62  KARDMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 121

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           +GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HI
Sbjct: 122 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHI 181

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           RTLLLTFF+RQ+P ++  G +YI +PPLY + +GK  QY+KD+E+++ Y I  +L     
Sbjct: 182 RTLLLTFFYRQLPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQIALALDGATL 241

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEIN 631
                   ++   L   + +   I K+I        + F+   +           ++E  
Sbjct: 242 HTNAQAPALAGEPLERLVSEHYAIQKMIGRMERRFPRVFLNHLIYQPTLAEADLGEREKV 301

Query: 632 VSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
            + A  L + LN                      +  ++    GV   + L    I    
Sbjct: 302 QAWAESLVSSLNENEVHGSTYSFVIHHDEERGVFEPALRVRTHGVDTDYALGTGFIAGSE 361

Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMN 746
            +       ++         +     +  +      L+ +    R+G+++QRYKGLGEMN
Sbjct: 362 YRKLNQLGEKLRGLIEEDAYIERGERRQPVASFEQALEWLVKESRRGLTIQRYKGLGEMN 421

Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             QLWETT++P +R +LRV + DA  AD+LF+ LMGD VEPRR FI+EN+L +  +DI
Sbjct: 422 PDQLWETTMDPASRRMLRVTVKDAIAADELFTTLMGDAVEPRRAFIEENALKAMNIDI 479


>gi|284931406|gb|ADC31344.1| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str. F]
          Length = 633

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/595 (38%), Positives = 353/595 (59%), Gaps = 12/595 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y+   I++LKGL+ V+KRP MYIG TD   GLHH+++E+ DNA+DE+L G A+ I V 
Sbjct: 3   SNYNEKHIKVLKGLEPVRKRPGMYIGSTD-TRGLHHLVWELFDNAVDEALNGSANKIEVV 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
              DGS  V+DNGRGIP   +    +S  + + T LHAGGKF+ ++YKVSGGLHGVG SV
Sbjct: 62  HKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121

Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L + + R+G +YE  + + G +  PL   GS+    GT + F P   IF    
Sbjct: 122 VNALSRKLIVNVHRDGGMYESIYQDGGKIIQPLKKMGSST-KHGTIIQFWPDPTIFKNIQ 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN   ++ RL E SFL   ++I  +D+ +PE  + T   K GI  ++ Y++ +KK  +  
Sbjct: 181 FNPYMIKERLHESSFLFKGLKIVFVDENNPELSQ-TFIAKDGILEYLKYVNENKKT-ISK 238

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G  + I +D   ++ D   E ++ F N++   +GG+H +G + A+   I  Y +K
Sbjct: 239 IIPFKGDYEKIVVDGCFQYTDNESELIISFANSVKTSEGGSHENGFKQAMLETINDYSKK 298

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364
                   +     D +EG + VLS+++P+    +  QTK KL + EV+  V   +   L
Sbjct: 299 YKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKILTQQL 358

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDPK 423
             +LEE+  +AK ++++       ++AA++A++ T++ K       L GKL    +++P 
Sbjct: 359 FYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTPAQQKNPL 418

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++E+FLVEGDSAGG+AK GR +  QAILPLRGK++NVE++R   +L ++EI ++I+ LG 
Sbjct: 419 QNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSIISCLGC 478

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG + F+I  L+YHKIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI   PLY 
Sbjct: 479 GIGNN-FNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALAPLYK 537

Query: 544 I--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           I         +  D+  L++  +    S E++ +     + S+      +D + +
Sbjct: 538 ISAKNSNKSAFAWDDYQLDELRVKYG-SYEVQRYKGLGEMNSEQLWTTTMDPSKR 591



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 43/62 (69%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
             +QRYKGLGEMN+ QLW TT++P  R L++V I +A QA+   S LMGD+   R+ +I 
Sbjct: 565 YEVQRYKGLGEMNSEQLWTTTMDPSKRQLIQVSIQNAVQAERKVSILMGDDASIRKNWIN 624

Query: 794 EN 795
           EN
Sbjct: 625 EN 626


>gi|254441649|ref|ZP_05055142.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 307]
 gi|198251727|gb|EDY76042.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 307]
          Length = 652

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/655 (34%), Positives = 332/655 (50%), Gaps = 22/655 (3%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+++       S+YDA SI++L+ ++ V+ RP MYIG  D    LHHM+ E++DN++DE+
Sbjct: 1   MANDLLSGQTPSNYDASSIEVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIVDNSMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A  I V L+ +G  TV DNGRGIP  +H +    SA EVI   L+AGGKF+  SY+
Sbjct: 60  VAGHATWIEVELHANGHATVRDNGRGIPVGMHPKLPNKSALEVIFCTLNAGGKFSGDSYQ 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALS  L++ +     ++ M F  G+   PL   G+A N  GT VTF
Sbjct: 120 TSGGLHGVGSSVVNALSDHLRVEVAINKELFMMEFSRGVPQAPLAKIGAAPNRRGTAVTF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P  +IF   D     L    R  ++L S V+I           P+E T  + GG+  ++
Sbjct: 180 HPDPEIFGSLDLKPARLFKMARSKAYLFSGVEIRWKTDINDGETPQEATFKFPGGLADYL 239

Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +          + P                ++ A+ W       +  + N +P  +GGTH
Sbjct: 240 NETLAGATTYSEKPFAGTVDFTDKFNVPGKVEWAINWTPTRDGFIQSYCNTVPTPEGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G  +A+ + I SY E+         ++  +D   G  +++S  + DP F  QTK++L 
Sbjct: 300 EQGFWAAVLKGIKSYGERVNNK--KATNITREDLTTGAGALVSCFIRDPEFVGQTKDRLA 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +++   +V+  V D    WL      A  I+  ++  +  R   ++ ++ T RK      
Sbjct: 358 TTDALRMVQLAVADHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKE-TSRKTATAKL 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DCS +    +ELF+VEGDSAGGSAK  R+R+ QA+LPL+GKILNV  A  +K+
Sbjct: 417 RLPGKLTDCSNKSRDGTELFIVEGDSAGGSAKMARNRKTQALLPLKGKILNVLGAASNKL 476

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            ++ EI  L  ALG  +G   F+++ LRY K+IIMTDADVDGAHI  LL+TFFF QM  +
Sbjct: 477 GTNAEISDLTQALGVQLGAK-FNVDDLRYEKVIIMTDADVDGAHIAALLMTFFFSQMRPM 535

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586
           I  G LY+  PPL+ +T+G   +Y  DE      L                  G +   D
Sbjct: 536 IDAGHLYLACPPLFRVTQGARREYCLDEVEKNAILARGLGGSGKMDVSRFKGLGEMDAKD 595

Query: 587 LRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           L+           I   I +         +E+ +           + N     +L
Sbjct: 596 LKETTMDPKSRKLIKVSIDEDEAGETADLVERLMGKKPEMRFQYIQENARFVEEL 650



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 7/189 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N        +   +++++    +  +    ++      + ++      V    +    
Sbjct: 465 ILNVLGAASNKLGTNAEISDLTQALGVQLGAKFNVDDLRYEKVIIMTDADVDGAHIAALL 524

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG---ISMQ 737
             F F      I +  +      +  +     +          + I + G  G   + + 
Sbjct: 525 MTFFFSQMRPMIDAGHLYLACPPLFRVTQGARREYCLDEVE-KNAILARGLGGSGKMDVS 583

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R+KGLGEM+A  L ETT++P +R L++V I   +A +  DL  RLMG + E R ++IQEN
Sbjct: 584 RFKGLGEMDAKDLKETTMDPKSRKLIKVSIDEDEAGETADLVERLMGKKPEMRFQYIQEN 643

Query: 796 SLPS-ALDI 803
           +     LD+
Sbjct: 644 ARFVEELDV 652


>gi|290243050|ref|YP_003494720.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. K90mix]
 gi|288945555|gb|ADC73253.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. K90mix]
          Length = 650

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/596 (39%), Positives = 354/596 (59%), Gaps = 15/596 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y ++SIQ+L+GL+ V+KRP MYIG TD  SGL H++ E+LDNA+DE++ G+ D I V  
Sbjct: 10  QYTSESIQVLEGLEPVRKRPGMYIGGTDS-SGLRHLLNEILDNAVDEAIAGHGDEIEVVF 68

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + DGS +V+DNGRGIP D+H+E+G+ AA +++T LHAGGKF+  +YKVSGGLHGVG +V 
Sbjct: 69  HQDGSYSVNDNGRGIPIDMHREKGMHAAALLVTTLHAGGKFDNAAYKVSGGLHGVGAAVT 128

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDF 187
           NA+S+   + I+R+G  Y+ +F  G   +   +    G+ TGT + F P    F    + 
Sbjct: 129 NAMSTRFDMDIRRDGQRYQQTFTEGGAPSDPEIKRYTGSYTGTLIRFWPDLARFDEDAEI 188

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------MFYKGGIEAFVSYLDRHKK 241
           ++D +  R++  ++L   +Q+S+ ++ + E  +              I   +S       
Sbjct: 189 DFDFMADRMKRTAYLVPGLQLSIREEVASEGGDEPRQAVFRFESFSQIIEDLSVDSGDAI 248

Query: 242 PLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             +      +       I + +A+RW++     +  + N IP  DG TH++GLR A+T+ 
Sbjct: 249 SEIIEADSAEHIDGQGEIEVAVALRWHERNRTVLAGYANIIPTADG-THMTGLRKAVTQA 307

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y E +    +  + + GDD + G  + +++++ DP F  QTKEKL +  V  VV   
Sbjct: 308 VNNYAEANN-LLRGNQELKGDDIQAGLIAAVAVRLADPLFQGQTKEKLKNGPVTGVVSRA 366

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL-TRRKGVLDIASLPGKLADCS 418
           +   L    EE+P  A+ IV+K   A   R+AA +A ++   RK V+   +LPGKLADC 
Sbjct: 367 IRAALDHAFEENPKMARAIVEKAKLAQKAREAADKAAEMVVNRKSVISATALPGKLADCQ 426

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP KSELF+VEGDSAGGSAK GR RE QAILPL+GKILN  RA   K+L S E+  L+
Sbjct: 427 EQDPSKSELFIVEGDSAGGSAKSGREREYQAILPLKGKILNTYRADPAKVLKSDEVKNLM 486

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ALG G  +  FD+ KLRYH+I+I+ DAD DG HI TL+LT+F    P LI +G++YI  
Sbjct: 487 LALGCGP-KSHFDLEKLRYHRIVILADADSDGHHIATLVLTYFHTNAPELIESGYVYIAL 545

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRNFIDD 593
           PPLY + +GK   Y+KD+  LE ++  Q +  +         G ++   L     D
Sbjct: 546 PPLYRVRKGKQSAYLKDDRELEAFMAQQKNPDKWQVQRFKGLGEMNAEQLWEAAMD 601



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 18/194 (9%)

Query: 615 QAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQ 674
           +A  + V   +  + + ++L     +  +    +  +    +  +SD     IA  V   
Sbjct: 470 RADPAKVLKSDEVKNLMLALGCGPKSHFDLEKLRYHRIVILADADSDGH--HIATLVLTY 527

Query: 675 FVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRK- 732
           F      +   G  Y  +            L  +  G +   +      L+   +  +  
Sbjct: 528 FHTNAPELIESGYVYIAL----------PPLYRVRKGKQSAYLKDDRE-LEAFMAQQKNP 576

Query: 733 -GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRR 789
               +QR+KGLGEMNA QLWE  ++P+TR + RV+ ++      +++F  LMG EV PRR
Sbjct: 577 DKWQVQRFKGLGEMNAEQLWEAAMDPETRRIARVQYSEQGREGDNEVFEVLMGAEVPPRR 636

Query: 790 EFIQENSLPSALDI 803
            FI+E +  + +D+
Sbjct: 637 AFIEEYAEKAVIDV 650


>gi|19909695|dbj|BAB87043.1| DNA gyrase subunit B [Paracoccus aminophilus]
          Length = 467

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 294/467 (62%), Positives = 360/467 (77%), Gaps = 7/467 (1%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHHM+YEV+DN IDE+L G+AD + V ++ D S +V DNGRGIP D+H  EG+SAAEVI
Sbjct: 1   GLHHMVYEVVDNGIDEALAGHADFVRVKIHSDSSVSVRDNGRGIPVDMHPSEGVSAAEVI 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+LRI R G  + + F +G     L
Sbjct: 61  MTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGKEHYVRFEHGDTVEHL 120

Query: 160 VVTGSA-GNDTGTEVTFLPSSD------IFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
            V G +   +TGTEV FL S+        FS  D+ + TL++RLREL+FLNS V+I L D
Sbjct: 121 RVVGDSEPGETGTEVRFLASTKEDGKDGTFSNLDYVFKTLENRLRELAFLNSGVRIILED 180

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R  EP    + Y GG+  FV Y+DR K  +M+ PI I G +  I +++AM WND YHE 
Sbjct: 181 ERPAEPIRTELHYDGGVREFVRYIDRSKTAVMKDPIFITGEKSGIGVEVAMWWNDSYHET 240

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           VL FTNNIPQ+DGGTHL+G R ALTR I +Y + S  +KK+K    GDD REG T VLS+
Sbjct: 241 VLPFTNNIPQRDGGTHLAGFRGALTRVINNYAQTSGIAKKEKIDFTGDDAREGLTCVLSV 300

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEVR  VE  VN+ LS W EE+P EAK IV K+++A++ R+AA
Sbjct: 301 KVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLSEWFEENPTEAKQIVGKIIEAALAREAA 360

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LTRRK  +D+ASLPGKLADC E+DP  SELF+VEGDSAGGSAKQGRSR+NQA+LP
Sbjct: 361 RKARELTRRKTAMDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRSRQNQAVLP 420

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           LRGKILNVERARFD+MLSS+ IGTLITALGTGIG+D F++NKLRYHK
Sbjct: 421 LRGKILNVERARFDRMLSSEMIGTLITALGTGIGRDEFNLNKLRYHK 467


>gi|66009737|gb|AAY42700.1| GyrB [Burkholderia pyrrocinia]
 gi|66009759|gb|AAY42701.1| GyrB [Burkholderia pyrrocinia]
 gi|66009779|gb|AAY42702.1| GyrB [Burkholderia pyrrocinia]
 gi|66009801|gb|AAY42703.1| GyrB [Burkholderia pyrrocinia]
          Length = 634

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 282/638 (44%), Positives = 394/638 (61%), Gaps = 20/638 (3%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGN 167
           LHGVGVS VNALSSWL+L ++R G    M F  GI              +P++VTG    
Sbjct: 1   LHGVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTE- 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + G
Sbjct: 60  NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGT
Sbjct: 118 GVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KL
Sbjct: 178 HLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TRRKGVLD 
Sbjct: 238 VSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTRRKGVLDG 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK
Sbjct: 298 VGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDK 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP 
Sbjct: 358 LLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPD 417

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  VIS + L
Sbjct: 418 MIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAVISGDAL 477

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                  L    +I      +D   +E  +     +  S++    + A  L   L+  A 
Sbjct: 478 GELARSYLLSQSVINRLSRLYDPAALEAIMDGVAIDL-SNEASTEASAKALHAALHDEAL 536

Query: 648 KSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703
           K+E      +        + V+R   G     V++     +   +     +N        
Sbjct: 537 KNEVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVATANTFTGLIGE 596

Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
              +      + +T   S +  + +   + +S QRYKG
Sbjct: 597 GAVIKRGERSMAVTDFKSAMKWLLADAERNVSKQRYKG 634


>gi|87200102|ref|YP_497359.1| DNA topoisomerase IV subunit B [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135783|gb|ABD26525.1| DNA topoisomerase IV subunit B [Novosphingobium aromaticivorans DSM
           12444]
          Length = 666

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/631 (37%), Positives = 351/631 (55%), Gaps = 27/631 (4%)

Query: 1   MSDNI--------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52
           MSD++           +YD  +I++L+GL+ V++RP MYIG TD E  LHH+  EVLDNA
Sbjct: 1   MSDDLFDKLPATSAAEAYDGSAIEVLEGLEPVRRRPGMYIGGTD-ERALHHLAAEVLDNA 59

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQ 111
           +DE++ G+A+ I V L      T+SDNGRGIP D H +  G SA EVI+T LH+GGKF+ 
Sbjct: 60  MDEAVAGHANRIEVLLEEGNRLTISDNGRGIPVDEHPKYPGKSALEVILTTLHSGGKFSG 119

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           K+Y  SGGLHGVGVSVVNALSS  ++ + R   +Y   F  G     L+  G+A N  GT
Sbjct: 120 KAYATSGGLHGVGVSVVNALSSLTRVEVARNKELYAQEFSRGNPTTKLMKVGNAPNRRGT 179

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYK 226
           +VTF+P ++IF     F    L   +R  ++L + V+I    + S    ++       + 
Sbjct: 180 QVTFIPDTEIFGEDAKFKPARLFRLVRSKAYLFAGVEIRWKCEPSLASDDVPAEAVFQFP 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNN 279
           GG+   ++     ++ +   P   +          +   ++ A+ W      +   + N 
Sbjct: 240 GGLADHLAEQVSGRECVTSVPFAGRQDFPLGPDGEEMGRVEWAIAWPLWSDGSYSWYCNT 299

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IP  DGGTH  GLR+ALT+ I ++ +     K    +   +D   G   +LS+ + DP+F
Sbjct: 300 IPTPDGGTHEQGLRAALTKGIRAFADLIGQKKAKDIA--PEDMITGSEIMLSVFIRDPQF 357

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
            SQTK++L S E   +VE+ V D    +L ++    K ++  V++    R   +  R++ 
Sbjct: 358 QSQTKDRLTSPEAARMVEAAVRDHFDHFLTDNMERGKALLGAVMERMDERLRRKAEREVK 417

Query: 400 RRKGVL-DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           R+         LPGKL DCS     ++ELF+VEGDSAGGSAKQ R R+ QAILP+RGKIL
Sbjct: 418 RKTATNARKLRLPGKLTDCSGEGSGETELFIVEGDSAGGSAKQARDRKTQAILPIRGKIL 477

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A  DK+ ++QEI  L  ALG G+ +D  + + LRY ++IIMTDADVDGAHI TLL+
Sbjct: 478 NVASATADKIRANQEIADLALALGCGMRKDC-NPDALRYDRVIIMTDADVDGAHIATLLM 536

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL-FCD 577
           TFFF++MP L+  G LY+ +PPLY +T G +  Y KD+    +    +   +++E+    
Sbjct: 537 TFFFQEMPELVRRGHLYLAQPPLYRLTSGSTSAYAKDDAHRAELEATKFKGKKVEVGRFK 596

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             G ++   LR           +     P +
Sbjct: 597 GLGEMNPQQLRETTMAPATRSLIRITLPPEY 627



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK----ITDASQADDLFSRLMGDEV 785
           G+K + + R+KGLGEMN  QL ETT+ P TRSL+R+         +   DL  RLMG + 
Sbjct: 587 GKK-VEVGRFKGLGEMNPQQLRETTMAPATRSLIRITLPPEYEGRAAVKDLVDRLMGRDP 645

Query: 786 EPRREFIQENSLPSALD 802
             R  FIQ  +  S +D
Sbjct: 646 AQRFMFIQNRA--SEID 660


>gi|114798323|ref|YP_759701.1| DNA topoisomerase IV subunit B [Hyphomonas neptunium ATCC 15444]
 gi|114738497|gb|ABI76622.1| DNA topoisomerase IV, B subunit [Hyphomonas neptunium ATCC 15444]
          Length = 665

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/649 (36%), Positives = 344/649 (53%), Gaps = 25/649 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y A  I++L+GL+ V+KRP MYIG TD E   HH+  EVLDNA+DE++ GYA+ I +
Sbjct: 16  TAGYSAKDIEVLEGLEPVRKRPGMYIGGTD-ERAWHHLFAEVLDNAMDEAVAGYANRIDI 74

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
            L+ DG  TV DNGRGIP D H +    SA EVIMT LH+GGKF+ K+Y  +GGLHGVG+
Sbjct: 75  KLDADGFLTVVDNGRGIPIDPHPKFPKKSALEVIMTTLHSGGKFSDKAYSTAGGLHGVGI 134

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SV 184
           SVVNALS  +++ + R+  +Y   F  G+    L   G+A N  GT V F P   IF   
Sbjct: 135 SVVNALSELVEVEVARDRTLYRQDFSRGLPLGKLQKVGAAPNRRGTSVRFKPDFQIFGDK 194

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDR 238
             +    L    R  ++L   V++          + S  P E  + Y  G+   ++ +  
Sbjct: 195 LRWRPQRLFQMARSKAYLFRGVEVRWSCDPELLPEDSKVPAEAVLSYPNGLADQLTEVFG 254

Query: 239 HKKPLMQSPIRIQGS-----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            K  + ++P           +   +I                + N IP  +GGTH +G R
Sbjct: 255 DKSTITETPFTGLVDMGAEGKVEWAIAWTQAGFGEADGFARSYCNTIPTPEGGTHEAGFR 314

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SA+T+ I ++ + +   K  +  V  +D       +LS+ +  P F  QTK+KL S+   
Sbjct: 315 SAITKGIRNFGDLTGNKKAAE--VTAEDVMGHSGLLLSVFIRGPEFVGQTKDKLSSTHAF 372

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VE+ V D    WL   P EA  ++   +D +  R   R+A++   RK       LPGK
Sbjct: 373 RLVENAVRDHFDHWLAGSPKEANKLLGWAIDRADERAKRRKAKE-ISRKSATKKLRLPGK 431

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS + P+ +ELFLVEGDSAGGSAKQ R+RE QAILPLRGKILNVE A  DK++ +QE
Sbjct: 432 LADCSAKGPEGTELFLVEGDSAGGSAKQARNRETQAILPLRGKILNVESASDDKLMGNQE 491

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +  L  ALGT +G+  F+I+ LRY +IIIMTDADVDGAHI  LL+TFF+R  P LI +G 
Sbjct: 492 LADLSLALGTELGRK-FNIDDLRYERIIIMTDADVDGAHIAALLITFFYRLTPGLIESGR 550

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LY+  PPL+ ++   ++ Y  D+      +             + K  +++      ++ 
Sbjct: 551 LYLALPPLFKLSNKGNIHYAMDDADRARIMKE-------HFKGNQKVEMTRFKGLGEMNP 603

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           A   +  +        +  +  A+     N        +   ++L  R 
Sbjct: 604 AQLKETTMNPSSRTLARVTLPAAMDDLEINPADLINTLMGKKAELRFRF 652



 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 80/193 (41%), Gaps = 12/193 (6%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N ES  +  +    +LA+    +  +  + ++      + ++      V    +    
Sbjct: 475 ILNVESASDDKLMGNQELADLSLALGTELGRKFNIDDLRYERIIIMTDADVDGAHIAALL 534

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG---ISMQ 737
             F +      I S R+      +  L   G+             I     KG   + M 
Sbjct: 535 ITFFYRLTPGLIESGRLYLALPPLFKLSNKGNIHYAMDDADR-ARIMKEHFKGNQKVEMT 593

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVK----ITDASQ--ADDLFSRLMGDEVEPRREF 791
           R+KGLGEMN +QL ETT+NP +R+L RV     + D     AD L + LMG + E R  F
Sbjct: 594 RFKGLGEMNPAQLKETTMNPSSRTLARVTLPAAMDDLEINPAD-LINTLMGKKAELRFRF 652

Query: 792 IQENSLPS-ALDI 803
           IQEN+     LDI
Sbjct: 653 IQENAAFVEELDI 665


>gi|162147271|ref|YP_001601732.1| DNA topoisomerase IV subunit B [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785848|emb|CAP55419.1| putative DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 678

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/590 (38%), Positives = 329/590 (55%), Gaps = 19/590 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N     YDA +I++L+GL+ V++RP MYIG TD     HH+  E+LDNA+DE++ G+A  
Sbjct: 30  NDAGGEYDASAIEVLEGLEPVRRRPGMYIGGTDEG-AYHHLASEILDNAMDEAVAGHATT 88

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I VTL      T+ DNGRGIP D H +    SA EVI+T LHAGGKF+ K+Y  SGGLHG
Sbjct: 89  IDVTLEAGDWLTIRDNGRGIPVDPHPKFKDRSALEVILTTLHAGGKFSGKAYATSGGLHG 148

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNAL++ +++ + R+  ++   +  G     L   G+  N  GT++ F P   IF
Sbjct: 149 VGSSVVNALAARMEVEVARDRAVWRQVYERGHPVTMLEKVGATQNRRGTQIRFTPDPQIF 208

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEAFVSYLD 237
               F+   L    R  ++L   V I         + +  P E  + + GG+   +    
Sbjct: 209 GRIHFSPARLYRLCRSKAYLFRGVTIRWSCDPALVRDADIPAEAVLHFPGGLADSLRDEL 268

Query: 238 RHKKPLMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            +   L+      +          D   ++ A+ + +    ++  + N IP   GGTH +
Sbjct: 269 GN-AALLTEMWSGEADLPVGPDGADTGRMEWAVAFLESGSASLSSYCNTIPTPQGGTHEA 327

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+AL +   ++ E+    +    +   DD      + LS+ + DP+F  QTKEKL SS
Sbjct: 328 GFRAALLKGFRAWGEQRSNKRAAAVNA--DDVLGAIAAKLSVFIRDPQFQGQTKEKLTSS 385

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E   ++E+ + D    WL  HP +A  ++  +++ +  R   +  +D T RK       L
Sbjct: 386 EASRLIETALRDRFEQWLAGHPAQADNLLAFIIERAEERLRRKDLKD-TPRKSATRRLRL 444

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL DC+  +  ++E+FLVEGDSAGGSAKQ R+RE QA+LPLRGKILNV  A  +K+ +
Sbjct: 445 PGKLTDCTRENAAETEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTEKLRA 504

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           +QE+  L+ ALG GIG+  FD  +LRY +I+IMTDADVDGAHI +LL+TFF+R++P LI 
Sbjct: 505 NQELRDLVEALGCGIGER-FDATRLRYGRIVIMTDADVDGAHIASLLMTFFYRELPDLIR 563

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            G LY+ +PPLY +T+G    Y  D+   E  L +             KG
Sbjct: 564 QGHLYLAQPPLYRLTQGGKTIYAMDDTDRERKLKSNFKPNAKVEVSRFKG 613



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRV--KITDASQADDLFSRLMGDEVEPRREF 791
           + + R+KGLGEM    L +TT++P  R+LL+V  +  D +   D    LMG   E R +F
Sbjct: 606 VEVSRFKGLGEMPPGDLKQTTMDPRHRTLLKVVTRPEDRALTSDRVEHLMGRRPELRFQF 665

Query: 792 IQENSLPSA-LDI 803
           IQE++     LD+
Sbjct: 666 IQEHAQTVEDLDV 678


>gi|115381158|gb|ABI96228.1| DNA gyrase subunit B [Spiroplasma alleghenense]
          Length = 552

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 244/538 (45%), Positives = 348/538 (64%), Gaps = 7/538 (1%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
            T  E GLHH+I+E++DN+IDE+L G+A+ ITV +  +    V DNGRGIP D+H E   
Sbjct: 1   GTTNEVGLHHLIWEIIDNSIDETLAGFANTITVVITNNNEIIVKDNGRGIPIDIHPETKK 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SA E + T LHAGGKF+  +YK+SGGLHGVG SVVNALS ++++ + R+  I+   F +G
Sbjct: 61  SALETVFTVLHAGGKFSSDTYKISGGLHGVGASVVNALSLYVEVMVLRDNKIHRQVFSDG 120

Query: 154 ILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLI 211
               + L + G+     GT V F P  +IF    +F++ T+Q++L++++FLN  V I+L 
Sbjct: 121 GTKISALEIIGNTDVQ-GTLVKFKPDPEIFKETINFDFKTIQNKLKQMAFLNRGVTINLY 179

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+RS +        + GIE +V+ ++  K  + ++   +  S ++I+I+ AM++ND Y E
Sbjct: 180 DQRSDKEISYNF--ENGIEDYVTEINSGKNKINENVFSVNESFNDIAIEFAMQYNDSYTE 237

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  F NNI   +GGTH  GLR AL + I +Y+ +S      K     DD +EG   VLS
Sbjct: 238 NLFSFCNNIFTSEGGTHEEGLRQALVKVINNYLNES-TKNVKKTKFTWDDIKEGIVCVLS 296

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           IK  DP+F  QTK KL + + +  V   + + L  +L ++P ++K I++K + +   R A
Sbjct: 297 IKHMDPQFEGQTKAKLSNLDAKEAVNQVITEKLKDYLLKNPEDSKKIIEKNMLSQKARIA 356

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A RAR+ TRRK  LD  SLPGKLADC  +D    EL+LVEGDSAGGSAK GR+R+ QAIL
Sbjct: 357 AMRAREDTRRKSALDNFSLPGKLADCESKDADLCELYLVEGDSAGGSAKTGRNRKYQAIL 416

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+ +  +   + EI +++TA+GTGI +D+ D+ K+RY KIIIMTDADVDGA
Sbjct: 417 PLRGKVLNVEKVKEGRAFENTEIQSIVTAIGTGI-KDNLDLEKIRYKKIIIMTDADVDGA 475

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           HIRTLLLTFF+R M  ++ NG +Y+ +PPLY I  GK   Y  +++ LE     Q   
Sbjct: 476 HIRTLLLTFFYRYMNKIVKNGNIYVAQPPLYKIEAGKKNAYAYNDQELEVLKAEQFKD 533



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 3/132 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +E      +++ + +  I    + +          ++      V    +    
Sbjct: 422 VLNVEKVKEGRAFENTEIQSIVTAIGTGIKDNLDLEKIRYKKIIIMTDADVDGAHIRTLL 481

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738
             F +    K + +  I       L  I  G K         L+ + +   K +  ++QR
Sbjct: 482 LTFFYRYMNKIVKNGNIY-VAQPPLYKIEAGKKNAYAYNDQELEVLKAEQFKDLKYTIQR 540

Query: 739 YKGLGEMNASQL 750
           YKGLGEM+  QL
Sbjct: 541 YKGLGEMDPIQL 552


>gi|15805931|ref|NP_294630.1| DNA gyrase subunit B [Deinococcus radiodurans R1]
 gi|6458625|gb|AAF10481.1|AE001943_1 DNA gyrase, subunit B [Deinococcus radiodurans R1]
          Length = 663

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 262/604 (43%), Positives = 372/604 (61%), Gaps = 24/604 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYI-GDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             Y+AD I +L+G+DAV+KRP MY+ G T G  G H ++ E++DN IDE L G+A  I +
Sbjct: 11  DDYNADQISVLEGMDAVRKRPGMYVQGGT-GIDGYHQLLTEIIDNGIDEGLAGFAGEIQI 69

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ DGS TV+D+GRGIP D+ K +G  A EVI + LHAGGKF Q +YKVSGGLHGVG +
Sbjct: 70  VLHADGSATVTDDGRGIPVDIMKSKGRPAIEVIFSELHAGGKFGQGAYKVSGGLHGVGST 129

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEVTFLPSSDIFSV 184
           VVNALS++L + + +   ++ + F  G+L  PL V G+   D    T+V+F P   IF  
Sbjct: 130 VVNALSTYLDVTVNKHKQLHHIRFERGVLVQPLEVLGATPKDVKWSTKVSFHPDPTIFKE 189

Query: 185 QDFNYD--TLQHRLRELSFLNSSVQISLIDKRSP----EPREITMFYKGGIEAFVSYLDR 238
            D  +D   +++RLREL++L + ++I + D+R+     E +E     KGGI  F   L  
Sbjct: 190 FDNQFDYLRIRNRLRELAYL-TGLKIVIRDERTELHGGEIKEEVFHEKGGIANFARALVT 248

Query: 239 HKKP-LMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHLSGLRSAL 296
                L   P+ ++G+   + +++A    + Y  +N+L + N I  +DGGT L+G ++A 
Sbjct: 249 DDTKLLYDQPVVMRGTHAEVEVEVAFIHANTYASDNILTYANMIRTRDGGTPLTGFKTAY 308

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y +     K       GDD  EG   V+S+K+ DP+F SQ K KL++SE ++ V
Sbjct: 309 TRVLNKYAKDKNLIKAGNPVPSGDDLLEGIYCVVSVKVGDPQFESQAKVKLLNSEAQTAV 368

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
            + V +  + +LEE+P   K IV+K  +A+  RDAAR+ARD+ RR   L+   LPGKLAD
Sbjct: 369 NAIVGEKFAQFLEENPKIGKTIVEKAAEAARARDAARKARDIVRRSNPLENDDLPGKLAD 428

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS +DP +SELF+VEG+SAGGSAK GR R  QAILPLRGKILNVE+A  +K+L + EI +
Sbjct: 429 CSSQDPAESELFIVEGNSAGGSAKGGRERRFQAILPLRGKILNVEKAELNKILKNAEIRS 488

Query: 477 LITALGTGI----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           LI A+G G      +  FD+  LRYHKI+IMTDAD+DG HI TLLLTFFFR M  ++  G
Sbjct: 489 LIGAIGAGFDGKGEEMRFDLENLRYHKIVIMTDADMDGGHITTLLLTFFFRFMRPIVEQG 548

Query: 533 FLYIIKPPLYGI-----TRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKN 585
            LYI +PPLY I     T+     Y+   E L++++ +   + +          G ++  
Sbjct: 549 HLYIAQPPLYKITVGAQTKNNKGVYLFTNEELKEHVADAVKAGKKYEIQRFKGLGEMNAE 608

Query: 586 DLRN 589
            L  
Sbjct: 609 QLWE 612



 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 2/95 (2%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
            N   + +     L + +    +  K   +QR+KGLGEMNA QLWETT+NP+TR L RV 
Sbjct: 567 KNNKGVYLFTNEELKEHVADAVKAGKKYEIQRFKGLGEMNAEQLWETTMNPETRVLKRVS 626

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSAL 801
           I D   A+++F  LMG EV PR++FI+EN+  + +
Sbjct: 627 IDDLIIANEIFDALMGSEVAPRKDFIRENARFAEI 661


>gi|255326299|ref|ZP_05367385.1| DNA gyrase subunit B [Rothia mucilaginosa ATCC 25296]
 gi|255296753|gb|EET76084.1| DNA gyrase subunit B [Rothia mucilaginosa ATCC 25296]
          Length = 700

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 243/684 (35%), Positives = 347/684 (50%), Gaps = 61/684 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I
Sbjct: 1   MASSNYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGFGQSI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS  V D+GRGIPTD+    G+S  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 60  QVILYRDGSVEVRDDGRGIPTDIEPRTGLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------------DNPLVVTG 163
            SVVNALSS L +++ R    Y+MSF +GI                       + L + G
Sbjct: 120 ASVVNALSSRLDVQVDRGSKTYQMSFRHGIPGFFESGRTPKPEDPFTPATEGTDALQIVG 179

Query: 164 SAGN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------- 214
            A    TGT V +     IF     F+Y+ L  R R+ +FL   ++I + D+R       
Sbjct: 180 RAKRGVTGTRVRYWADPQIFTPDAKFSYEDLAARARQTAFLIPGLRICIRDERRLPGTPG 239

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------- 253
             EP E    Y GGI  FV +        +    R  GS                     
Sbjct: 240 ELEPHEEVFQYDGGISEFVEF--LAHDERITDTWRFSGSGSFTETVPVLGEDGRSQLTDV 297

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK- 312
             +  +D+A+RW  GY   V  F N I    GGTH +G    L R +  ++  +    K 
Sbjct: 298 ERDCEVDVALRWGIGYETTVRSFVNIIATPKGGTHTTGFEQGLLRVMRKHLADNARKYKV 357

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               +  DD   G T+VL++++ +P+F  QTKE L +  VR +V   V D L A LE   
Sbjct: 358 GNDKIEKDDVLAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDALKARLESTT 417

Query: 373 LEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
              K     + +KV+     R +AR  ++  RRK  L+ +S+P KL DC   + + SELF
Sbjct: 418 RAEKAQATALCEKVVSEMKTRVSARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELF 477

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSA G+A+  RS   QA+LP+RGKILN +RA    +L++ E   LI  +G G G+ 
Sbjct: 478 IVEGDSALGTARLARSSSYQALLPIRGKILNTQRASVTDVLANAECAALIQVIGAGSGRT 537

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FD++  RY K+I+MTDADVDGAHIRTLLLT F+R M  LI  G +Y   PPL+ +   +
Sbjct: 538 -FDLDSARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEVVR 596

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             +  +   +  +  +++ L    E     K  I +      +D     +  +   +   
Sbjct: 597 RGKPNEMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYKGLGEMDADQLAETTMDPRHRML 656

Query: 609 DKTFIEQA-VISGVFNCESDQEIN 631
            +  IE A      F+     E+ 
Sbjct: 657 RRIRIEDAEAAERAFSLLMGSEVA 680



 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 15/184 (8%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +     +V   ++ A  +  I   S +++         ++      V    +    
Sbjct: 506 ILNTQRASVTDVLANAECAALIQVIGAGSGRTFDLDSARYGKVIMMTDADVDGAHIRTLL 565

Query: 681 SIFSFGSKYKRIFSNRIEENYLTIL--SLICNGD------KIKITGPCSLLDTIFSIGRK 732
               +      I + R+      +    ++  G                LLD++      
Sbjct: 566 LTLFYRYMRPLIEAGRVYAAVPPLHRVEVVRRGKPNEMVYTYSEKQLHELLDSLQEQ--- 622

Query: 733 GIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788
           G+S    +QRYKGLGEM+A QL ETT++P  R L R++I DA  A+  FS LMG EV PR
Sbjct: 623 GVSYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIRIEDAEAAERAFSLLMGSEVAPR 682

Query: 789 REFI 792
           +EFI
Sbjct: 683 KEFI 686


>gi|254417729|ref|ZP_05031453.1| DNA topoisomerase IV, B subunit [Brevundimonas sp. BAL3]
 gi|196183906|gb|EDX78882.1| DNA topoisomerase IV, B subunit [Brevundimonas sp. BAL3]
          Length = 699

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 219/568 (38%), Positives = 320/568 (56%), Gaps = 19/568 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             ++Y A SI++L+GL+ V+KRP MYIG TD E  LHH+  EVLDNA+DE++  +A +IT
Sbjct: 56  AQNAYSASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLFAEVLDNAMDEAVARHAKLIT 114

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V L+ DG  +V D+GRGIP D H +  G SA EV+MT LH+GGKF+ K+Y+ SGGLHGVG
Sbjct: 115 VELDADGYLSVRDDGRGIPVDPHPKHPGKSALEVVMTVLHSGGKFSGKAYETSGGLHGVG 174

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L + + R+G  ++ SF  G +  P+          GT++ F P  +IF +
Sbjct: 175 VSVVNALSEHLDVTVWRDGFEWKQSFSRGNVLGPIQQV-QPSRKRGTQIRFKPDDEIFGM 233

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRH 239
              F    L    R  ++L   V+I             P +  + + GG+   +      
Sbjct: 234 GAAFKPARLFRMARSKAYLFRGVEIKWTCAPERITDATPTQALLHFPGGLADALIDRIGE 293

Query: 240 KKPLMQSPIRIQGSR------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            + +  +    +  R         ++  +          +  + N +   DGGTH +G R
Sbjct: 294 LETVTPTFA-GRAERQGEAGAFEWAVTWSPIGFGEADGFIQSYCNTVSTPDGGTHEAGFR 352

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +AL + + SY E +   +     +  +D      +++S+ + +P F  QTK++L S E  
Sbjct: 353 AALVKGLKSYGELTNEKRAA--IITAEDVTANAGALISVFIRNPEFQGQTKDRLSSPEGA 410

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VE  + D L  WL E P +A  ++  V+D +  R   R+ ++  +R        LPGK
Sbjct: 411 RLVEQLLRDPLDHWLTESPKQANALLGFVVDRAEDRLRRRKDKE-VQRAAATRKLRLPGK 469

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L+DCS +  + +ELF+VEGDSAGGSAKQ R R  QAILPLRGKILNV  A  DK+  + E
Sbjct: 470 LSDCSRQSAQGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVASATADKLRQNIE 529

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           +  L  ALG   G   F+I+ LRY +I+IMTDADVDGAHI  LL+TFF+R MP  I  G 
Sbjct: 530 LSDLALALGVQPGNR-FNIDDLRYERIVIMTDADVDGAHIAALLITFFYRVMPETIRQGR 588

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLED 561
           +++  PPLY I+ G   +Y +D+   ++
Sbjct: 589 VFMALPPLYRISAGPLSEYARDDAHRDE 616



 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 5/86 (5%)

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA-DDLFSR 779
            LL T+F  G+K   + R+KGLGEM ASQL ETT++P  R+L R+ + DA  + +DL  R
Sbjct: 616 ELLATVFK-GKK-TEIGRFKGLGEMMASQLKETTMDPKKRTLARITVPDAETSVEDLVER 673

Query: 780 LMGDEVEPRREFIQENSLPS--ALDI 803
           LMG   + R +FIQEN+      LD+
Sbjct: 674 LMGKRADARFQFIQENAQFVKEDLDV 699


>gi|148380730|ref|YP_001255271.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153932289|ref|YP_001385014.1| DNA topoisomerase IV subunit B [Clostridium botulinum A str. ATCC
           19397]
 gi|153937688|ref|YP_001388484.1| DNA topoisomerase IV subunit B [Clostridium botulinum A str. Hall]
 gi|170761352|ref|YP_001788088.1| DNA topoisomerase IV subunit B [Clostridium botulinum A3 str. Loch
           Maree]
 gi|148290214|emb|CAL84333.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 3502]
 gi|152928333|gb|ABS33833.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933602|gb|ABS39101.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A str. Hall]
 gi|169408341|gb|ACA56752.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 651

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/621 (36%), Positives = 339/621 (54%), Gaps = 23/621 (3%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M + I     YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   G
Sbjct: 1   MEERIDNTKDYDVTKLTSLEKLEPVRVRPGMYIGST-GIKGLHHCIWEILDNAIDEISNG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D   V LN D S TV DNGRGIPT +H  +  S  E++ T LH GGKFN   YK SGG
Sbjct: 60  YGDTAEVILNKDKSVTVVDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNSIYKTSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGND 168
           LHGVG SVVNALS W ++ + +   IY+  F             G     L + G   + 
Sbjct: 120 LHGVGASVVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DK 178

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  ++FS  DF +D +  RL+EL+F N  + + LID R  EP       + G
Sbjct: 179 TGTRVTFKPDKEVFSTIDFKFDVIDERLQELAFQNKGITLKLIDNRKEEPEIKEYHSERG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKD 284
           +  F+ YL+  K P+    +  +G ++  ++    ++  ++ D   EN+  + NNIP  +
Sbjct: 239 LLDFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTE 298

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
            GTH +G ++ +TR      +K    K+  +   GDD REG T+++ IK+ +P F  QTK
Sbjct: 299 AGTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTK 358

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E  +++          W+E++   + +I+   L A+  R+  ++  +  ++K  
Sbjct: 359 TKLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIG 418

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A L GK+A C+ RD   +E  +VEGDSAGGSAKQ R R  Q I+P +GKI+N E+ +
Sbjct: 419 KGLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQK 478

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            + +L S+E+    TA+GTG+  D++    L+Y KIII++DADVDG HIRTL +T+ +R 
Sbjct: 479 IENVLGSEELKIFNTAIGTGV-LDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRY 537

Query: 525 MPSLIHNGFLYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           M SL+ NG LYI  PPLY + +         Y  ++E LE           I+ +     
Sbjct: 538 MKSLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNDEELEKAKKQIGRGYLIQRYKGLGE 597

Query: 581 VISKNDLRNFIDDALKIDKLI 601
           +  +      ++   +  + I
Sbjct: 598 MNPEQLWETTLNPETRTLQRI 618



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                 +       L      IGR G  +QRYKGLGEMN  QLWETTLNP+TR+L R+ I
Sbjct: 562 KKGEKSVYCYNDEELEKAKKQIGR-GYLIQRYKGLGEMNPEQLWETTLNPETRTLQRITI 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS 796
            DA++A+ + S LMGD VEPR+ ++ + +
Sbjct: 621 EDAAKAEKMVSLLMGDVVEPRKNYLYKYA 649


>gi|168183163|ref|ZP_02617827.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           Bf]
 gi|237796208|ref|YP_002863760.1| DNA topoisomerase IV subunit B [Clostridium botulinum Ba4 str. 657]
 gi|182673723|gb|EDT85684.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           Bf]
 gi|229263801|gb|ACQ54834.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           Ba4 str. 657]
          Length = 651

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/621 (36%), Positives = 340/621 (54%), Gaps = 23/621 (3%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M + I     YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   G
Sbjct: 1   MEERIDNTKDYDVTKLTSLEKLEPVRVRPGMYIGST-GIKGLHHCIWEILDNAIDEISNG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y +   V LN D S TV DNGRGIPT +H  +  S  E++ T LH GGKFN   YK SGG
Sbjct: 60  YGNTAEVILNKDKSVTVVDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNSIYKTSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGND 168
           LHGVG SVVNALS W ++ + +   IY+  F             G     L + G   + 
Sbjct: 120 LHGVGASVVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DK 178

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  ++FS  DF +D +  RL+EL+F N  + + LID R  EP       + G
Sbjct: 179 TGTRVTFKPDKEVFSTIDFKFDVIDERLQELAFQNKGITLKLIDNRKEEPEIKEYHSERG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKD 284
           +  F+ YL+  K P+    +  +G ++  ++    ++  ++ D   EN+  + NNIP  +
Sbjct: 239 LLDFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTE 298

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
            GTH +G ++ +TR      +K    K+  +   GDD REG T+++ IK+ +P F  QTK
Sbjct: 299 AGTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTK 358

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E  +++          W+E++   + +I+   L A+  R+  ++  +  ++K  
Sbjct: 359 TKLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIG 418

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A L GK+A C+ RD   +E  +VEGDSAGGSAKQ R R  Q+I+P +GKI+N E+ +
Sbjct: 419 KGLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQK 478

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            + +L S+E+    TA+GTG+  D++    L+Y KIII++DADVDG HIRTL +T+ +R 
Sbjct: 479 IENVLGSEELKIFNTAIGTGV-LDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRY 537

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSL----QYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           M SL+ NG LYI  PPLY + +         Y  ++E LE           I+ +     
Sbjct: 538 MKSLVANGHLYIAMPPLYKVYKKDKKGEKLVYCYNDEELEKAKKQIGRGYLIQRYKGLGE 597

Query: 581 VISKNDLRNFIDDALKIDKLI 601
           +  +      ++   +  + I
Sbjct: 598 MNPEQLWETTLNPETRTLQRI 618



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 58/96 (60%)

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              +      G+K+        L+       +G  +QRYKGLGEMN  QLWETTLNP+TR
Sbjct: 554 LYKVYKKDKKGEKLVYCYNDEELEKAKKQIGRGYLIQRYKGLGEMNPEQLWETTLNPETR 613

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +L R+ I DA++A+ + S LMGD VEPR+ ++ + +
Sbjct: 614 TLQRITIEDAAKAEKMVSLLMGDVVEPRKNYLYKYA 649


>gi|90020023|ref|YP_525850.1| DNA topoisomerase IV subunit B [Saccharophagus degradans 2-40]
 gi|89949623|gb|ABD79638.1| DNA topoisomerase IV subunit B [Saccharophagus degradans 2-40]
          Length = 631

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/639 (35%), Positives = 332/639 (51%), Gaps = 15/639 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A+ I++L GLD VKKRP MY   TD     +H+  E++DN++DE+L G+A  I V 
Sbjct: 2   ANYSAEDIEVLTGLDPVKKRPGMY---TDTVRP-NHLAQEIIDNSVDEALAGHAKKIEVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S TV+D+GRG+P DLH E+     EVI++ LHAGGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 58  LHKDQSVTVTDDGRGMPVDLHPEQKKPGVEVILSTLHAGGKFSNKNYQFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L++ I+R+G +Y M F NG   + L V  +    +TGT V FLP+   F    
Sbjct: 118 VNALSESLEVTIRRDGQVYRMGFKNGDKVSDLEVIDTCGKRNTGTSVRFLPNPSYFDSHK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H LR  + L   +++   D+++ +    T +Y+ G++ ++S      + L   
Sbjct: 178 FSVSRLRHNLRAKAVLCPGLEVVFTDEQTGDK--DTWYYEDGLKDYLSQATEGWETLPAD 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     +    + D A++W  +G       + N IP   GGTH++GLR+ L   +  Y E
Sbjct: 236 PFVGSFTGTTEAADWAVQWLPEGGEVTQESYVNLIPTAQGGTHVNGLRTGLMEAMREYCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                      +  DD       VLS K+ DP+FS QTKE+L S E  + V     D  S
Sbjct: 296 IRN-LVPRGIKITPDDVWMNCCFVLSSKLADPQFSGQTKERLSSREAAAFVSGVAKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  E   + +  ++ +       R+     RK +    +LPGKLADCS  DP   
Sbjct: 355 LWLNQHTEEGDKLAEFCINNAQ---KRVRSSKKVARKKITAGPALPGKLADCSSDDPANG 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R R++QAI+PLRGKILN       ++L+SQE+  +  ALG   
Sbjct: 412 ELFLVEGDSAGGSAKQARDRDHQAIMPLRGKILNTWEVESQEVLASQEVHDISVALGIDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D  +++ LRYHKI I+ DAD DG HI TLL   F++   +L+  G +Y+  PPLY I 
Sbjct: 472 GSD--NLDGLRYHKICILADADSDGLHIATLLCALFYQHFRALVSAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            G+ + Y  D+   +  L      ++       +           + +        +   
Sbjct: 530 IGQDVYYALDDSEKQGILDRIVAEKKKGKVNVQRFKGLGEMNPLQLRETTMARDT-RRLV 588

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                   E   +  +   +       +      +  + 
Sbjct: 589 QLTIDEEDETTQLMDMLLAKKRSGDRKTWLEDKGDLADI 627



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG +++QR+KGLGEMN  QL ETT+  DTR L+++ I +  +   L   L
Sbjct: 546 ILDRIVAEKKKGKVNVQRFKGLGEMNPLQLRETTMARDTRRLVQLTIDEEDETTQLMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ ++++
Sbjct: 606 LAKKRSGD----RKTWLED 620


>gi|187778654|ref|ZP_02995127.1| hypothetical protein CLOSPO_02249 [Clostridium sporogenes ATCC
           15579]
 gi|187772279|gb|EDU36081.1| hypothetical protein CLOSPO_02249 [Clostridium sporogenes ATCC
           15579]
          Length = 651

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/621 (36%), Positives = 341/621 (54%), Gaps = 23/621 (3%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M + I     YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   G
Sbjct: 1   MEERIDNTKDYDVTKLTSLEKLEPVRVRPGMYIGST-GTKGLHHCIWEILDNAIDEISNG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y +   V LN D S TV DNGRGIPT +H  +  S  E++ T LH GGKFN   YK SGG
Sbjct: 60  YGNTAEVILNKDKSVTVVDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNSIYKTSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGND 168
           LHGVG SVVNALS W ++ + + G IY+  F             G     L V     + 
Sbjct: 120 LHGVGASVVNALSEWTEVEVFQNGKIYKQRFEYAIDKKLNKKMPGTPVTKLKVIQDT-DK 178

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT+VTF P  ++FS  DF +D +  RL+EL+F N  + + LID R  EP       + G
Sbjct: 179 TGTKVTFKPDKEVFSTIDFKFDVIDERLQELAFQNKGITLKLIDNRKEEPEIKEYHSERG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKD 284
           +  F+ YL+  K P+    +  +G ++  ++    ++  ++ D   EN+  + NNIP  +
Sbjct: 239 LLDFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTE 298

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
            GTH +G ++ +TR      +K    K+  +   GDD REG T+++ IK+ +P F  QTK
Sbjct: 299 AGTHETGFKTGMTRAFKEGAKKLNLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTK 358

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E  +++          W+E++   + +I+   L A+  R+  ++  +  ++K  
Sbjct: 359 TKLGNNEAYTMMNDLAYTKFLEWIEDNKEISTLIINNALAAAARREKIKKINEAEKKKIG 418

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A L GK+A C+ RD   +E  +VEGDSAGGSAKQ R R  Q+I+P +GKI+N E+ +
Sbjct: 419 KGLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQK 478

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            + +L S+E+    TA+GTG+  D++    L+Y KIII++DADVDG HIRTL +T+ +R 
Sbjct: 479 IENVLGSEELKIFNTAIGTGV-LDNYKEQDLKYDKIIILSDADVDGYHIRTLWMTYIYRY 537

Query: 525 MPSLIHNGFLYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           M SL+ NG LYI  PPLY + +         Y  ++E LE           I+ +     
Sbjct: 538 MKSLVANGHLYIAMPPLYKVYKKDKKSEKSIYCYNDEELEKAKKQIGKGYLIQRYKGLGE 597

Query: 581 VISKNDLRNFIDDALKIDKLI 601
           +  +      ++   +  + I
Sbjct: 598 MNPEQLWETTLNPETRTLQRI 618



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
             +   I       L      IG KG  +QRYKGLGEMN  QLWETTLNP+TR+L R+ I
Sbjct: 562 KKSEKSIYCYNDEELEKAKKQIG-KGYLIQRYKGLGEMNPEQLWETTLNPETRTLQRITI 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS 796
            DA++A+ + S LMGD VEPR+ ++ + +
Sbjct: 621 EDAAKAEKMVSLLMGDVVEPRKNYLYKYA 649


>gi|209544317|ref|YP_002276546.1| DNA topoisomerase IV subunit B [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531994|gb|ACI51931.1| DNA topoisomerase IV, B subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 678

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/585 (38%), Positives = 328/585 (56%), Gaps = 19/585 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            YDA +I++L+GL+ V++RP MYIG TD     HH+  E+LDNA+DE++ G+A  I VTL
Sbjct: 35  EYDASAIEVLEGLEPVRRRPGMYIGGTDEG-AYHHLASEILDNAMDEAVAGHATTIDVTL 93

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
                 T+ DNGRGIP D H +    SA EVI+T LHAGGKF+ K+Y  SGGLHGVG SV
Sbjct: 94  EAGDWLTIRDNGRGIPVDPHPKFKDRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSV 153

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNAL++ +++ + R+  ++   +  G     L   G+  N  GT++ F P   IF    F
Sbjct: 154 VNALAARMEVEVARDRAVWRQVYERGHPVTVLEKVGATQNRRGTQIRFTPDPQIFGRIHF 213

Query: 188 NYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   L    R  ++L   V I         + +  P E  + + GG+   +     +   
Sbjct: 214 SPARLYRLCRSKAYLFRGVTIRWSCDPALVRDADIPAEAVLHFPGGLADSLRDELGN-AA 272

Query: 243 LMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+      +          D   ++ A+ + +    ++  + N IP   GGTH +G R+A
Sbjct: 273 LLTEMWSGEADLPVGPDGADTGRMEWAVAFLESGSASLSSYCNTIPTPQGGTHEAGFRAA 332

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L +   ++ E+    +    +   DD      + LS+ + DP+F  QTKEKL SSE   +
Sbjct: 333 LLKGFRAWGEQRSNKRAAAVNA--DDVLGAIAAKLSVFIRDPQFQGQTKEKLTSSEASRL 390

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +E+ + D    WL  HP +A  ++  +++ +  R   +  +D T RK       LPGKL 
Sbjct: 391 IETALRDRFEQWLAGHPAQADNLLAFIIERAEERLRRKDLKD-TPRKSATRRLRLPGKLT 449

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+  +  ++E+FLVEGDSAGGSAKQ R+RE QA+LPLRGKILNV  A  +K+ ++QE+ 
Sbjct: 450 DCTRENAAETEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTEKLRANQELR 509

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L+ ALG GIG+  FD  +LRY +I+IMTDADVDGAHI +LL+TFF+R++P LI  G LY
Sbjct: 510 DLVEALGCGIGER-FDATRLRYGRIVIMTDADVDGAHIASLLMTFFYRELPDLIRQGHLY 568

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           + +PPLY +T+G    Y  D+   E  L +             KG
Sbjct: 569 LAQPPLYRLTQGGKTIYAMDDTDRERKLKSNFKPNAKVEVSRFKG 613



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRV--KITDASQADDLFSRLMGDEVEPRREF 791
           + + R+KGLGEM    L +TT++P  R+LL+V  +  D +   D    LMG   E R +F
Sbjct: 606 VEVSRFKGLGEMPPGDLKQTTMDPRHRTLLKVVTRPEDRALTSDRVEHLMGRRPELRFQF 665

Query: 792 IQENSLPSA-LDI 803
           IQE++     LD+
Sbjct: 666 IQEHAQTVEDLDV 678


>gi|168180821|ref|ZP_02615485.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           NCTC 2916]
 gi|182668281|gb|EDT80260.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           NCTC 2916]
          Length = 651

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/621 (37%), Positives = 341/621 (54%), Gaps = 23/621 (3%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M + I     YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   G
Sbjct: 1   MEERIDNTKDYDVTKLTSLEKLEPVRVRPGMYIGST-GIKGLHHCIWEILDNAIDEISNG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D   V LN D S TV DNGRGIPT +H  +  S  E++ T LH GGKFN   YK SGG
Sbjct: 60  YGDTAEVILNKDKSVTVVDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNSIYKTSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGND 168
           LHGVG SVVNALS W ++ + +   IY+  F             G     L + G  G +
Sbjct: 120 LHGVGASVVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDTG-E 178

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  ++FS  DF +D +  RL+EL+F N  + + LID R  EP       + G
Sbjct: 179 TGTRVTFKPDKEVFSTIDFKFDVIDERLQELAFQNKGITLKLIDNRKEEPEIKEYHSERG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKD 284
           +  F+ YL+  K P+    +  +G ++  ++    ++  ++ D   EN+  + NNIP  +
Sbjct: 239 LLDFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTE 298

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
            GTH +G ++ +TR      +K    K+  +   GDD REG T+++ IK+ +P F  QTK
Sbjct: 299 AGTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTK 358

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E  +++          W+E++   + +I+   L A+  R+  ++  +  ++K  
Sbjct: 359 TKLGNNEAYTMMNDLAYTKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIG 418

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A L GK+A C+ RD   +E  +VEGDSAGGSAKQ R R  Q+I+P +GKI+N E+ +
Sbjct: 419 KGLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQK 478

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            + +L S+E+    TA+GTG+  D++    L+Y KIII++DADVDG HIRTL +T+ +R 
Sbjct: 479 IENVLGSEELKIFNTAIGTGV-LDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRY 537

Query: 525 MPSLIHNGFLYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           M SL+ NG LYI  PPLY I +         Y  ++E LE           I+ +     
Sbjct: 538 MKSLVANGHLYIAMPPLYKIYKKDKKGEKSVYCYNDEELEKAKKQIGRGYLIQRYKGLGE 597

Query: 581 VISKNDLRNFIDDALKIDKLI 601
           +  +      ++   +  + I
Sbjct: 598 MNPEQLWETTLNPETRTLQRI 618



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                 +       L      IGR G  +QRYKGLGEMN  QLWETTLNP+TR+L R+ I
Sbjct: 562 KKGEKSVYCYNDEELEKAKKQIGR-GYLIQRYKGLGEMNPEQLWETTLNPETRTLQRITI 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS 796
            DA++A+ + S LMGD VEPR+ ++ + +
Sbjct: 621 EDAAKAEKMVSLLMGDVVEPRKNYLYKYA 649


>gi|68138551|gb|AAY85983.1| GyrB [Burkholderia cepacia]
          Length = 633

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 280/636 (44%), Positives = 397/636 (62%), Gaps = 20/636 (3%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169
           GVGVS VNALSSWL+L ++R+G    M F  G+              +P++VTG    + 
Sbjct: 2   GVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NR 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG+
Sbjct: 61  GTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL
Sbjct: 119 KGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVS
Sbjct: 179 TGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   
Sbjct: 239 SEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+L
Sbjct: 299 LPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I
Sbjct: 359 SSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMI 418

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L  
Sbjct: 419 ERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGE 478

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
                L    +I+     +D   +E AV+ GV    S++E   + A  L   L+  A K+
Sbjct: 479 LARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKN 537

Query: 650 EKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
           E      +        + V+R   G     V++     +   +     +N  +       
Sbjct: 538 EVRVVPSYDPVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGA 597

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
            +      + +    S +  + +   + +S QRYKG
Sbjct: 598 VIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 633


>gi|114320108|ref|YP_741791.1| DNA topoisomerase IV subunit B [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226502|gb|ABI56301.1| DNA topoisomerase IV subunit B [Alkalilimnicola ehrlichii MLHE-1]
          Length = 630

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 235/643 (36%), Positives = 346/643 (53%), Gaps = 19/643 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ YDA  I++L GL+ V+KRP MY   TD     +H+  EV+DN++DE + G+A  + V
Sbjct: 2   SNRYDAADIEVLTGLEPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEVMAGHATRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGS  V D+GRG+P D+H  +G    EVI+  LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 58  TLFRDGSLEVRDDGRGMPVDVHPGQGRPGVEVILGTLHAGGKFSGKNYQYSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  L++R++R G  Y MSF +G   + L   G  A  DTGT + F P +  F   
Sbjct: 118 VVNALSRRLEVRVRRGGIEYMMSFAHGEKTSELTEVGKVAKKDTGTLLRFWPDTKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   ++H LR  + L   + +   D+ + E        + G++ ++S   +  + L  
Sbjct: 178 KFSIPRMRHVLRAKAVLCPGLVVRFYDEAAEEETVWCY--EDGLKDYLSGALQEWQTLPT 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   + S D+ + + A+ W  +G       + N IP   GGTH++GLRS LT  I  + 
Sbjct: 236 EPFIGRMSSDHEAAEWAVTWLPEGGEAITESYVNLIPTAQGGTHVNGLRSGLTEAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  E  + VLS+K+ DP+FS QTKE+L S E  + V   V D  
Sbjct: 296 EFRNLLPRG-VRITPEDVWERVSYVLSVKLEDPQFSGQTKERLSSRECATFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +H  +A+ IV+ ++ A+       RA     RK V    +LPGKLADC+ +DP +
Sbjct: 355 SLWLNQHVEDAEAIVQLIISAAQ---RRMRASRKVARKRVTQGPALPGKLADCAAQDPAR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++++SQE+  +  ALGT 
Sbjct: 412 TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVAPDEVMASQEVHDIAVALGTD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G +   ++ LRY KI I+ DAD DGAHI TLL   F +  P+L+  G +++  PPLY I
Sbjct: 472 PGSE--QLDGLRYGKICILADADPDGAHIATLLCALFLKHFPALVRAGHVFVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK   Y  D     ++     L          K  +++      ++     +  +   
Sbjct: 530 DVGKQTFYALD-----EHERQGVLDRIAAEKLKGKVAVTRFKGLGEMNPLQLRETTMAPD 584

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
                +  ++ A  +     +   + N S   +       +AE
Sbjct: 585 TRRLVQLMVDDAEATEALMAQLLGKRNASQRRRWLEDKGNMAE 627



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +   KG +++ R+KGLGEMN  QL ETT+ PDTR L+++ + DA   + L ++L
Sbjct: 547 VLDRIAAEKLKGKVAVTRFKGLGEMNPLQLRETTMAPDTRRLVQLMVDDAEATEALMAQL 606

Query: 781 MGD-EVEPRREFIQE 794
           +G      RR ++++
Sbjct: 607 LGKRNASQRRRWLED 621


>gi|220935291|ref|YP_002514190.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996601|gb|ACL73203.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 640

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/632 (35%), Positives = 329/632 (52%), Gaps = 15/632 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            +SY+A  I++L GLD V+KRP MY   TD     +H+  EV+DN++DE++ G+A  I V
Sbjct: 12  TNSYNAADIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEAIAGHAKKIDV 67

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S +V+D+GRG+P D+H +E     EVI++ LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 68  VLHKDNSLSVADDGRGMPVDMHPKEKRPGVEVILSTLHAGGKFSGKNYQFSGGLHGVGVS 127

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  L++ IKR+G  Y M+F +G     L V G  G  +TGT + F P    F   
Sbjct: 128 VVNALSRHLEVWIKRDGREYNMAFADGHKKTDLEVVGEVGRRNTGTTLRFWPDPKYFDSP 187

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L   + +S  D+ + E   +   Y+ G+  ++       + + +
Sbjct: 188 KFSVPRLKHILRAKAVLCPGLAVSFYDEVTGER--VDWCYQAGLRDYLVEAVDGFERVPE 245

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     +    + D A+ W  +G       + N IP   GGTH++GLR+ LT  +  + 
Sbjct: 246 EPFMGSIAGQTEAADWAVVWLPEGGEAVAESYVNLIPTAQGGTHVNGLRTGLTDAVREFC 305

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    +LS KM DP+F+ QTKE+L S E    V   V D  
Sbjct: 306 EFRNLLPRG-VKLTPEDVWDRVAYILSFKMQDPQFAGQTKERLSSREAAPFVSGVVKDAF 364

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +HP   + I +  ++++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 365 SLWLNQHPAAGERIAELAINSAQ---RRARAGKKVVRKKLTQGPTLPGKLADCASQDLAR 421

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L SQEI  +  A+G  
Sbjct: 422 TELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNAWEVEADQVLGSQEIHDISVAVGVE 481

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G    ++  LRY KI I+ DAD DGAHI TLL   F R    L+  G +Y+  PPL+ I
Sbjct: 482 PGNT--ELKDLRYGKICILADADSDGAHIATLLCALFVRHFRPLVEKGHVYVAMPPLFRI 539

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   +  L      ++      ++           + +   +D   +  
Sbjct: 540 DVGKEVFYALDEHEKQGVLERIEAEKKRGKVSVTRFKGLGEMNPLQLRE-TTMDPDTRRL 598

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                    E   +  +   +       S   
Sbjct: 599 VQLTVDAGDETNTLLDMLLAKKRAADRKSWLE 630



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ I +  ++G +S+ R+KGLGEMN  QL ETT++PDTR L+++ +    + + L   L
Sbjct: 557 VLERIEAEKKRGKVSVTRFKGLGEMNPLQLRETTMDPDTRRLVQLTVDAGDETNTLLDML 616


>gi|90415523|ref|ZP_01223457.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
           HTCC2207]
 gi|90332846|gb|EAS48016.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
           HTCC2207]
          Length = 630

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/566 (40%), Positives = 333/566 (58%), Gaps = 14/566 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y+A+ I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I VT
Sbjct: 2   STYNAEDIEVLTGLDPVRKRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHASRIDVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V D+GRG+P D+H E+GI   EVI++ LH+GGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 58  LHKDGSLSVCDDGRGMPVDIHPEQGIPGVEVILSTLHSGGKFSNKNYQFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD 186
           VNALS  L+L +KR GN+++++F NG   + L V  S G  +TGT + F P+S  F    
Sbjct: 118 VNALSDKLELTVKRGGNVHQITFANGDKTSDLQVIDSCGQRNTGTILRFWPNSIYFDSVK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H LR  + L S + +S  D+ + E       Y+ G++ ++S   +    L  +
Sbjct: 178 FSLLRLRHVLRAKAVLCSGLTVSFYDENTDES--EEWHYQDGLQDYLSGSLQGWDILPAT 235

Query: 247 PIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     +  N + D A++W  DG       + N IP   GGTH++GLR+ L   +  + E
Sbjct: 236 PFIGTYASANEAADWAVQWMPDGGDLVQESYVNLIPTPQGGTHVNGLRTGLLDAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  DD  +  + VLS K+ DP+FS QTK++L S +  + V   V D  S
Sbjct: 296 FRNLLPRG-VKLTPDDIWDRCSFVLSSKLEDPQFSGQTKDRLSSRQAAAFVSGVVKDSFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  EA+ + +  + ++  R    RA     RK +    +LPGKLADCS  +P++ 
Sbjct: 355 LWLNQHTEEAEKLAELCIFSAQSR---MRASKKVVRKKITQGPALPGKLADCSSAEPERC 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+F VEGDSAGGSAKQ R+RENQAI+PLRGKILN       ++L SQE+  +  ALG   
Sbjct: 412 EIFFVEGDSAGGSAKQARNRENQAIMPLRGKILNTWEVDSQEILGSQEVHDISVALGIDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G +  ++ KLRYHK+ I+ DAD DG HI TL+   F R    L+  G +Y+  PPL+ I 
Sbjct: 472 GLE--NLEKLRYHKVCILADADSDGLHIATLICALFVRHFRPLVTAGHVYVAMPPLFRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE 571
            GK + Y  DE   E  L       +
Sbjct: 530 VGKEVFYALDESEKEGILDRIEAENK 555



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +  ++G +++QR+KGLGEMN  QL ETT+NPDTR L+++ +      D    
Sbjct: 544 EGILDRIEAENKRGKVNVQRFKGLGEMNPLQLRETTMNPDTRRLVQLTVDTDDNTDSTMD 603

Query: 779 RLMGDEVEP-RREFIQE 794
            L+  +  P RR +++ 
Sbjct: 604 MLLAKKRAPDRRSWLES 620


>gi|68138631|gb|AAY85993.1| GyrB [Burkholderia multivorans]
          Length = 639

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 279/643 (43%), Positives = 395/643 (61%), Gaps = 20/643 (3%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVT 162
           KVSGG  GVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V 
Sbjct: 1   KVSGGPAGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVI 60

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
           G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +     
Sbjct: 61  GDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DD 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             + GG++ FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNIPQ
Sbjct: 118 FAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQ 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQ
Sbjct: 178 RDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRRK
Sbjct: 238 TKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           GVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQ R R+ QAILPLRGK+LNVE+
Sbjct: 298 GVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQRRDRKFQAILPLRGKVLNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+
Sbjct: 358 ARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFY 417

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           RQMP +I  G++YI +PPLY +  GK  +Y+KD+  L  +++  +L     L  ++   I
Sbjct: 418 RQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQGSELLPSENATPI 477

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           + + L       L    +I+     +D   +E  +     +  S +    + A  L   L
Sbjct: 478 TGDALGELARSYLMSQSVIERLSRLYDPAALEAIMDGVSIDL-SSEASTEASAKALHAAL 536

Query: 643 NFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
           +    K+E      +        + V+R   G     V++     +   +     +   E
Sbjct: 537 HDDTLKNEVRVVPAYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVNTAKTFE 596

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                   +      + +T   + +  + +   + +S QRYKG
Sbjct: 597 GLIQAGAVIKRGERSMAVTDFKNAMKGLLADAERNVSKQRYKG 639


>gi|332188910|ref|ZP_08390613.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. S17]
 gi|332011050|gb|EGI53152.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. S17]
          Length = 659

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/664 (36%), Positives = 345/664 (51%), Gaps = 30/664 (4%)

Query: 1   MSDNI------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+++         +YDA SI++L+GL+ V++RP MYIG TD E  LHH+  EVLDNA+D
Sbjct: 1   MSNDLFAGTPRTQPAYDASSIEVLEGLEPVRRRPGMYIGGTD-ERALHHLAAEVLDNAMD 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKS 113
           E++ G+A+ I V L      T+ DNGRGIP D H +    SA EVI++ LH+GGKF  K+
Sbjct: 60  EAVAGHANRIEVKLEPGNRLTIVDNGRGIPVDPHPKFPDKSALEVILSTLHSGGKFTGKA 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y  SGGLHGVG+SVVNALSS   + + RE  +Y   F  G    PL   G+A N  GT V
Sbjct: 120 YATSGGLHGVGISVVNALSSDTVVEVARERVLYRQRFAKGATLGPLETVGAAPNRRGTSV 179

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGG 228
            F P S+IF     F    L   +R  ++L + V+I             P +    + GG
Sbjct: 180 AFTPDSEIFGPELHFKPARLHKLVRSKAYLFAGVEIRWHCAPELISDDTPADAVFQFPGG 239

Query: 229 IEAFVSYLDRHKKPLMQSPIR----IQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           +   +      ++              G   R   ++   +  +  Y      + N IP 
Sbjct: 240 LADHLKEQIGGRECATADFFSGNQDFPGEQGRVEWAVAWPLWSDGSYS----WYCNTIPT 295

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            DGGTH  GLR AL R + ++ E     K     +  DD   G   +LS+ + +P+F SQ
Sbjct: 296 PDGGTHEQGLRQALVRGLRAFGELVNQKKAKD--ITADDVMVGSELMLSVFIREPQFQSQ 353

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK++L S E   +VE  V D    +L  +    K ++  VLD    R   +  R++ R+ 
Sbjct: 354 TKDRLTSPEAAGLVEKAVRDHFDHFLSANMERGKALLGYVLDRMDERLRRKAEREVKRKT 413

Query: 403 GVL-DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
                   LPGKL DCS   P+ +ELF+VEGDSAGGSAKQ R R+ QAILP+RGKILNV 
Sbjct: 414 ATSARKLRLPGKLTDCSADSPEGTELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVA 473

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            A   K+L +QEI  L  A+G G  +D  D  +LRY KI+IMTDADVDGAHI TLL+TFF
Sbjct: 474 SATSAKILQNQEIADLTLAMGCGTRKDC-DPTQLRYEKIVIMTDADVDGAHIATLLMTFF 532

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKG 580
           F++MP L+  G LY+ +PPLY +T G    Y +D+    +        +++        G
Sbjct: 533 FQEMPDLVRRGHLYLAQPPLYRLTVGAKSLYARDDSHRAELERTAFKGKKVDVARFKGLG 592

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            ++   LR    D      +       +++    + ++  +    ++     +   + A 
Sbjct: 593 EMNPGQLRETTMDPATRSLIRITLPQEYEERAGVKDLVDRLM--GNNPAHRFAFIQENAA 650

Query: 641 RLNF 644
           RL+ 
Sbjct: 651 RLDE 654



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 7/77 (9%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK----ITDASQADDLFSRLMGDEV 785
           G+K + + R+KGLGEMN  QL ETT++P TRSL+R+       + +   DL  RLMG+  
Sbjct: 580 GKK-VDVARFKGLGEMNPGQLRETTMDPATRSLIRITLPQEYEERAGVKDLVDRLMGNNP 638

Query: 786 EPRREFIQENSLPSALD 802
             R  FIQEN+  + LD
Sbjct: 639 AHRFAFIQENA--ARLD 653


>gi|153938307|ref|YP_001392050.1| DNA topoisomerase IV subunit B [Clostridium botulinum F str.
           Langeland]
 gi|170757231|ref|YP_001782378.1| DNA topoisomerase IV subunit B [Clostridium botulinum B1 str. Okra]
 gi|152934203|gb|ABS39701.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           F str. Langeland]
 gi|169122443|gb|ACA46279.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           B1 str. Okra]
          Length = 651

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/621 (36%), Positives = 339/621 (54%), Gaps = 23/621 (3%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M + I     YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   G
Sbjct: 1   MEERIDNTKDYDVTKLTSLEKLEPVRVRPGMYIGST-GIKGLHHCIWEILDNAIDEISNG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D   V LN D S TV DNGRGIPT +H  +  S  E++ T LH GGKFN   YK SGG
Sbjct: 60  YGDTAEVILNKDKSVTVVDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNSIYKTSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGND 168
           LHGVG SVVNALS W ++ + +   IY+  F             G     L + G   + 
Sbjct: 120 LHGVGASVVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DK 178

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  ++FS  DF +D +  RL+EL+F N  + + LID R  EP       + G
Sbjct: 179 TGTRVTFKPDKEVFSTIDFKFDVIDERLQELAFQNKGITLKLIDNRKEEPEIKEYHSERG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKD 284
           +  F+ YL+  K P+    +  +G ++  ++    ++  ++ D   EN+  + NNIP  +
Sbjct: 239 LLDFIDYLNESKAPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTE 298

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
            GTH +G ++ +TR      +K    K+  +   GDD REG T+++ IK+ +P F  QTK
Sbjct: 299 AGTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTK 358

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E  +++          W+E++   + +I+   L A+  R+  ++  +  ++K  
Sbjct: 359 TKLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIG 418

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A L GK+A C+ RD   +E  +VEGDSAGGSAKQ R R  Q+I+P +GKI+N E+ +
Sbjct: 419 KGLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQK 478

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            + +L S+E+    TA+GTG+  D++    L+Y KIII++DADVDG HIRTL +T+ +R 
Sbjct: 479 IENVLGSEELKIFNTAIGTGV-LDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRY 537

Query: 525 MPSLIHNGFLYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           M SL+ NG LYI  PPLY + +         Y  + E LE           I+ +     
Sbjct: 538 MKSLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNNEELEKAKKQIGRGYLIQRYKGLGE 597

Query: 581 VISKNDLRNFIDDALKIDKLI 601
           +  +      ++   +  + I
Sbjct: 598 MNPEQLWETTLNPETRTLQRI 618



 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                 +       L      IGR G  +QRYKGLGEMN  QLWETTLNP+TR+L R+ I
Sbjct: 562 KKGEKSVYCYNNEELEKAKKQIGR-GYLIQRYKGLGEMNPEQLWETTLNPETRTLQRITI 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS 796
            DA++A+ + S LMGD VEPR+ ++ + +
Sbjct: 621 EDAAKAEKMVSLLMGDVVEPRKNYLYKYA 649


>gi|158954862|gb|ABW84388.1| DNA topoisomerase IV subunit B [Spiroplasma eriocheiris]
 gi|158954868|gb|ABW84391.1| DNA topoisomerase IV subunit B [Spiroplasma sp. SHRIMP]
          Length = 568

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 236/571 (41%), Positives = 346/571 (60%), Gaps = 15/571 (2%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIG TD   GLHH+++E++DN+IDE+L G+A  I + ++ +   TV DNGRG+P 
Sbjct: 1   KRPGMYIGSTD-IRGLHHLVWEIVDNSIDEALAGFASEINIIIHKNNGITVKDNGRGVPI 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
             H   G S  EVI + LHAGGKF    YK SGGLHGVG SVVNALSS   + I R+  I
Sbjct: 60  GKHAS-GKSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSEFDVTIYRDKKI 118

Query: 146 YEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
             + F N G L   L   GS    TGT V F+P  +IF V DF++ T+  R+RE +FLNS
Sbjct: 119 SNIKFNNGGKLAQKLTTIGSTA-TTGTTVYFVPDPEIFKVIDFSFSTISERIRESAFLNS 177

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            ++I+L D+R+ +  E       G+E F++Y++  KKP+    I  +G   +I +++A++
Sbjct: 178 GLKITLQDERTDKYVEYLF--NNGLEEFITYMNEGKKPITP-IITFKGIEKDIDVEIALQ 234

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           ++  ++EN+L F NN+   DGG+H+ G R+ LT+ I  Y  K    K+  +++   D RE
Sbjct: 235 YSTEFNENLLSFANNVKTSDGGSHVVGFRTGLTKVINEYARKEGLLKEKDKNLDSTDTRE 294

Query: 325 GFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           G T+++S+K+P+   ++  QTK KL +S+ ++ VE+ V   +  W+ E+   A  I++K 
Sbjct: 295 GLTAIISVKIPESLIQYEGQTKGKLGTSDAKTAVENIVAKQMQFWMLENKTNAYAIIEKA 354

Query: 383 LDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           L A   ++ AR+AR+     ++       L GKL     ++ K +ELFLVEGDSAGGSAK
Sbjct: 355 LLARTAKEEARKAREAARGNKRKSNSERLLTGKLTPAQNKNKKVNELFLVEGDSAGGSAK 414

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR R+ QAIL LRGK++N E+A+   +++++EI  +I A+G G G + FD+    Y KI
Sbjct: 415 SGRDRKFQAILSLRGKVINAEKAKLQDLMNNEEINLMIHAIGAGFGNN-FDLEDANYGKI 473

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEES 558
           IIMTDAD DGAHI+TLLLTFF+R M  LI +  +YI  PPL+ IT  + K + Y  DE  
Sbjct: 474 IIMTDADTDGAHIQTLLLTFFYRFMRPLIEDKRVYIALPPLFKITNLKTKKVSYAWDENE 533

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           L+   +     +         G ++   L  
Sbjct: 534 LKT-KLKHLKDKFELQRYKGLGEMNAEQLWE 563



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNP 757
           +    +QRYKGLGEMNA QLWETT++P
Sbjct: 542 KDKFELQRYKGLGEMNAEQLWETTMDP 568


>gi|322807083|emb|CBZ04657.1| topoisomerase IV subunit B [Clostridium botulinum H04402 065]
          Length = 651

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/621 (36%), Positives = 339/621 (54%), Gaps = 23/621 (3%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M + I     YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   G
Sbjct: 1   MEERIDNTKDYDVTKLTSLEKLEPVRVRPGMYIGST-GLKGLHHCIWEILDNAIDEISNG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D   V LN D S TV DNGRGIPT +H  +  S  E++ T LH GGKFN   YK SGG
Sbjct: 60  YGDTAEVILNKDKSVTVVDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNSIYKTSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGND 168
           LHGVG SVVNALS W ++ + +   IY+  F             G     L + G   + 
Sbjct: 120 LHGVGASVVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DK 178

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  ++FS  DF +D +  RL+EL+F N  + + LID R  EP       + G
Sbjct: 179 TGTRVTFKPDKEVFSTIDFKFDVIDERLQELAFQNKGITLKLIDNRKEEPEIKEYHSERG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKD 284
           +  F+ YL+  K P+    +  +G ++  ++    ++  ++ D   EN+  + NNIP  +
Sbjct: 239 LLDFIDYLNESKAPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTE 298

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
            GTH +G ++ +TR      +K    K+  +   GDD REG T+++ IK+ +P F  QTK
Sbjct: 299 AGTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTK 358

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E  +++          W+E++   + +I+   L A+  R+  ++  +  ++K  
Sbjct: 359 TKLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIG 418

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A L GK+A C+ RD   +E  +VEGDSAGGSAKQ R R  Q+I+P +GKI+N E+ +
Sbjct: 419 KGLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQK 478

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            + +L S+E+    TA+GTG+  D++    L+Y KIII++DADVDG HIRTL +T+ +R 
Sbjct: 479 IENVLGSEELKIFNTAIGTGV-LDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRY 537

Query: 525 MPSLIHNGFLYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           M SL+ NG LYI  PPLY + +         Y  + E LE           I+ +     
Sbjct: 538 MKSLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNNEELEKAKKQIGRGYLIQRYKGLGE 597

Query: 581 VISKNDLRNFIDDALKIDKLI 601
           +  +      ++   +  + I
Sbjct: 598 MNPEQLWETTLNPETRTLQRI 618



 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                 +       L      IGR G  +QRYKGLGEMN  QLWETTLNP+TR+L R+ I
Sbjct: 562 KKGEKSVYCYNNEELEKAKKQIGR-GYLIQRYKGLGEMNPEQLWETTLNPETRTLQRITI 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS 796
            DA++A+ + S LMGD VEPR+ ++ + +
Sbjct: 621 EDAAKAEKMVSLLMGDVVEPRKNYLYKYA 649


>gi|307822419|ref|ZP_07652651.1| DNA topoisomerase IV, B subunit [Methylobacter tundripaludum SV96]
 gi|307736985|gb|EFO07830.1| DNA topoisomerase IV, B subunit [Methylobacter tundripaludum SV96]
          Length = 630

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/641 (34%), Positives = 348/641 (54%), Gaps = 19/641 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y+A +I++L GL+ V+KRP MY   TD     +H++ EV+DN++DE++ G+A  I V
Sbjct: 2   SNEYNAAAIEVLSGLEPVRKRPGMY---TDTTRP-NHLVQEVVDNSVDEAMAGHATAIDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DGS  VSDNGRG+P D+H E+GI   EVI+T+LHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 58  VLYKDGSVLVSDNGRGMPVDIHPEQGIPGVEVILTQLHAGGKFSNKNYQFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ L++ +KR G IY M + +G     LV TG+   N+TGT + F P+   F   
Sbjct: 118 VVNALSAKLEVEVKRNGKIYRMDYADGEKQTELVETGTVGKNNTGTSIRFWPNEKYFDSN 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
             +   L+H LR  + L   ++ISL   ++ E        + G++ ++           +
Sbjct: 178 KISVLKLKHVLRAKAVLCPGLKISLKVDQTDEEYFWCY--QDGLKEYLLDRIGDIDYCPE 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVL--CFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            P     + ++ +++  + W       VL   + N +P   GGTH++GLR+ LT  +  +
Sbjct: 236 QPFMGNMAANHEAVEWGIVWAIENPAEVLAESYVNLVPTAQGGTHVNGLRAGLTEAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +      +    V  +D  E    VLS+K+ DP+FS QTKE+L S E  + V     D 
Sbjct: 296 CDIRNILPRG-VKVAPEDVWENCHFVLSVKLEDPQFSGQTKERLSSRECVAFVSGVAKDS 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++P E + I + ++ ++  R  + +      RK +    +LPGKLADCS +D  
Sbjct: 355 FSLWLNQNPAEGEKIAEIIISSAQKRLRSNKK---IIRKKITSGPALPGKLADCSAQDIA 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R R+ QAI+PLRGKILN      +++++SQE+  +  A+  
Sbjct: 412 RTELFLVEGDSAGGSAKQARERDFQAIMPLRGKILNTWEVESNQVMASQEVHDI--AVAL 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI   S D+  LRY K+ I+ DAD DG HI TL+   F++   +L+  G +++  PPLY 
Sbjct: 470 GIEPGSSDLQNLRYGKVCILADADSDGNHIATLICALFYQHFNALVVAGHVFVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DE   +  L   +  +        +         + + +   ++   + 
Sbjct: 530 IDVGKRVFYALDEAERQGVLDRITAEKLKGQINVQRFKGLGEMNPSQLRE-TTMNPDTRR 588

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                  T +E    +G  +    ++ +      L  + N 
Sbjct: 589 L---VQLTVLEDDDTNGQLDLLLAKKRSQDRKVWLETKGNL 626



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 38/50 (76%), Gaps = 2/50 (4%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI-TD 769
           +LD I +   KG I++QR+KGLGEMN SQL ETT+NPDTR L+++ +  D
Sbjct: 548 VLDRITAEKLKGQINVQRFKGLGEMNPSQLRETTMNPDTRRLVQLTVLED 597


>gi|114569878|ref|YP_756558.1| DNA topoisomerase IV subunit B [Maricaulis maris MCS10]
 gi|114340340|gb|ABI65620.1| DNA topoisomerase IV subunit B [Maricaulis maris MCS10]
          Length = 672

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 235/616 (38%), Positives = 345/616 (56%), Gaps = 22/616 (3%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y A  I++L+GL+AV++RP MYIG TD E   HH+  E+LDN++DE++ G+AD I V ++
Sbjct: 27  YSAAHIEVLEGLEAVRRRPGMYIGGTD-ERAYHHLFAEILDNSMDEAVAGWADRIEVAVD 85

Query: 70  MDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
            D   TV+DNGRGIP D H +    SA EV++T LHAGGKF+  +YK SGGLHGVG+SVV
Sbjct: 86  EDSYITVTDNGRGIPVDPHPKYPDKSALEVVLTILHAGGKFSDSAYKTSGGLHGVGISVV 145

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALS  L + + RE  ++  S+  G+   PLV  G A N  GT++ FLP + IF  +   
Sbjct: 146 NALSEVLDVEVAREKTLWTQSYSRGLPQGPLVKVGPAPNRRGTKIRFLPDTQIFGDKMSV 205

Query: 188 NYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               +    R  +FL   V+I         + +  P +  + + GG+   ++ L   +  
Sbjct: 206 KPARIYAMARSKAFLRRGVKIQWRCAPSLVEGTDIPADDILCFPGGLADRMAELAEKRAL 265

Query: 243 LMQSPIR--IQGSRDNISIDLAMRWN-DGY----HENVLCFTNNIPQKDGGTHLSGLRSA 295
           +        ++       ++ A+ W+ +GY          + N +P   GGTH  GLR+A
Sbjct: 266 VTAEGFSGRVEREDGAGGVEWAITWSGNGYGGDADGFCQSYCNTVPTPQGGTHEQGLRAA 325

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L++ + +Y E      K    +  +D   G  +++S+ + DP F  QTKE+L + E   +
Sbjct: 326 LSKGLRAYAEH--THAKKASQITAEDVLGGAGALVSVFIGDPEFQGQTKERLATPEATKL 383

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ V D    WL   P EA  +V+  ++ +  R   R+ ++  +R+       LPGKLA
Sbjct: 384 VETAVRDQFDHWLAGSPKEAAKLVEFAIERADDRMRRRKEKN-VKRQTASRRLRLPGKLA 442

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DCS  D   +ELFLVEGDSAGGSAKQ RSR+ QAILPLRGKILNV  A  DK+ ++QEI 
Sbjct: 443 DCSRADADGTELFLVEGDSAGGSAKQARSRQTQAILPLRGKILNVASATADKISANQEIS 502

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L+ ALG   G   F +  LRY +++IMTDADVDGAHI  LL+TFF+R MP LIH+G L+
Sbjct: 503 DLLLALGCLTGSK-FKLEDLRYERVVIMTDADVDGAHIAALLITFFYRSMPELIHSGRLF 561

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           + +PPLY +T+G    Y +D+   E  + ++  +         KG+       + +    
Sbjct: 562 LAQPPLYRLTQGSRTLYARDDAHREQLIRDEFKANSKIEVGRFKGL--GEMTPSQLKQ-T 618

Query: 596 KIDKLIKDFYPNHDKT 611
            +D  ++         
Sbjct: 619 TMDPAVRTLARVVIDE 634



 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 6/188 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +S   ++++ L  +   +   +       + +V      V    +    
Sbjct: 484 ILNVASATADKISANQEISDLLLALGCLTGSKFKLEDLRYERVVIMTDADVDGAHIAALL 543

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738
             F + S  + I S R+      +  L      +           I         I + R
Sbjct: 544 ITFFYRSMPELIHSGRLFLAQPPLYRLTQGSRTLYARDDAHREQLIRDEFKANSKIEVGR 603

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM  SQL +TT++P  R+L RV I   D    + L   LMG + E R +FIQ+N+
Sbjct: 604 FKGLGEMTPSQLKQTTMDPAVRTLARVVIDENDMPTLEALVETLMGKKPEARFKFIQDNA 663

Query: 797 LPS--ALD 802
                 LD
Sbjct: 664 TFVTEDLD 671


>gi|304321475|ref|YP_003855118.1| DNA topoisomerase IV subunit B [Parvularcula bermudensis HTCC2503]
 gi|303300377|gb|ADM09976.1| DNA topoisomerase IV subunit B [Parvularcula bermudensis HTCC2503]
          Length = 665

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 234/673 (34%), Positives = 356/673 (52%), Gaps = 37/673 (5%)

Query: 1   MSDNIQ-----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MS   +     +  Y A  I++L+GL+ V+KRP MYIG TD E  LHH+  EVLDN++DE
Sbjct: 1   MSKAQKADLFDSGDYTAKDIEVLEGLEPVRKRPGMYIGGTD-ERALHHLFAEVLDNSMDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFNQKSY 114
           ++ G+A  I V L+ +G  TV+DNGRGIP D H +    SA EVI T LH+GGKF+ K+Y
Sbjct: 60  AVAGHASRIEVHLDAEGKLTVADNGRGIPIDKHPKFKTKSALEVIFTTLHSGGKFSNKAY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
             SGGLHGVG+SVVNALS  L + + R  ++Y  ++  G+  + L   G+A +  GT VT
Sbjct: 120 ATSGGLHGVGISVVNALSDDLVVEVARNRDLYRQTYAKGLPTSKLRKVGAAPSRRGTTVT 179

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKG 227
           F P  +IF     F    L    R  ++L   V+I             P P++  + + G
Sbjct: 180 FHPDPEIFGKGASFKPARLFRMARSKAYLFGGVEIRWSCDPSLLADDDPTPQKEVLHFAG 239

Query: 228 GIEAFVSYLDRHKKPLMQSPIR--IQGSRDNISIDLAM------------RWNDGYHENV 273
           G++ +++++   +  +        I+    + +++ A+            +  DG+    
Sbjct: 240 GLKDYLTHVVGERPTVTGEVFAGKIEKEGGHGTVEWAIVWGRAGFQTPAGQMADGFTN-- 297

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             + N +P  +GGTH  G+R+AL+R + +Y E +   K    ++  +D       +LS+ 
Sbjct: 298 -SYCNTVPTPEGGTHEQGMRAALSRGLKAYAELAGQKKAA--NITAEDVLGTAGVLLSVF 354

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P F  QTK+KL ++E + + E+ +      WL  H  +A  +++ V+D +  R   R
Sbjct: 355 VSNPEFQGQTKDKLATAEAQKLTEAAIRPAFDHWLAGHKQQADQLLEWVIDRAEDRIRRR 414

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           + ++  +R   +    LPGKLADC+ +D   +ELFLVEGDSAGGSAKQ R RE QAILPL
Sbjct: 415 KEKE-VQRASAMKKLRLPGKLADCTAKDRTGTELFLVEGDSAGGSAKQARRRETQAILPL 473

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGKILNV  +  DK+  ++E+  +  A+G G+G   F+++ LRY KI+IMTDADVDGAHI
Sbjct: 474 RGKILNVASSTKDKITQNKEVTDIALAMGVGLGSR-FELDDLRYDKIVIMTDADVDGAHI 532

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
             LL+TFF   MP LI  G LY+ +PPLY +++G    Y  D+   E  +  +  S    
Sbjct: 533 AALLITFFHISMPGLIQAGRLYMAQPPLYRLSQGGKTVYALDDADREAKIKAEFKSGSKV 592

Query: 574 LFC--DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                   G ++  DL+    D             +  +            N E      
Sbjct: 593 DVGRFKGLGEMNAKDLKETTMDPATRILARVRLTTDEIEDINNLVDRLMGRNAEPRFRFI 652

Query: 632 VSLASKLANRLNF 644
              A  + + L+ 
Sbjct: 653 QDNAQFVTDDLDL 665



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQ 749
           I + R+      +  L   G  +           I +  + G  + + R+KGLGEMNA  
Sbjct: 548 IQAGRLYMAQPPLYRLSQGGKTVYALDDADREAKIKAEFKSGSKVDVGRFKGLGEMNAKD 607

Query: 750 LWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS--ALD 802
           L ETT++P TR L RV++   +    ++L  RLMG   EPR  FIQ+N+      LD
Sbjct: 608 LKETTMDPATRILARVRLTTDEIEDINNLVDRLMGRNAEPRFRFIQDNAQFVTDDLD 664


>gi|19909673|dbj|BAB87032.1| DNA gyrase subunit B [Paracoccus sp. PC1]
          Length = 467

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 289/467 (61%), Positives = 359/467 (76%), Gaps = 6/467 (1%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HHM+YEV+DN IDE+L G+AD + V ++ D S +V DNGRGIP D+H  EG+SAAEVIMT
Sbjct: 1   HHMVYEVVDNGIDEALAGHADFVQVKIHDDSSVSVRDNGRGIPVDMHASEGVSAAEVIMT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           +LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+LRI R G  + + F +G     L V
Sbjct: 61  QLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGKEHFVRFEHGDTVEHLRV 120

Query: 162 TGSAGNDTGTEVTFLPSSD------IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            G A  +TGTEV F+ S+        FS  ++++ TL++RLREL+FLNS V+I L D R 
Sbjct: 121 VGDAPGETGTEVRFMASAKTNHPDGTFSNLEYSFKTLENRLRELAFLNSGVRIILEDARH 180

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            E +   +FY+GG+  FV YLDR K  +M  PI + G R+ I +++AM WND YHE VL 
Sbjct: 181 AEVQRTELFYEGGVREFVKYLDRSKTAVMPEPIFMTGERNGIGVEVAMWWNDSYHETVLP 240

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTH++G R ALTR I  Y + S  +KK+K    GDD REG T VLS+K+P
Sbjct: 241 FTNNIPQRDGGTHMAGFRGALTRVIGKYAQDSGIAKKEKVDFTGDDAREGLTCVLSVKVP 300

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEVR  VE  V + L+ W EE+P EA+ IV K+++A++ R+AAR+A
Sbjct: 301 DPKFSSQTKDKLVSSEVRPAVEGLVGEKLAEWFEENPTEARQIVGKIIEAALAREAARKA 360

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LTRRK  +D+ASLPGKLADC E+DP  SELF+VEGDSAGGSAKQGRSR+NQA+LPLRG
Sbjct: 361 RELTRRKTAMDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRSRQNQAVLPLRG 420

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           KILNVERARFD+MLSS +IGTLITALGTGIG+D F + KLRYHKI+I
Sbjct: 421 KILNVERARFDRMLSSDQIGTLITALGTGIGRDEFSLKKLRYHKIVI 467


>gi|296284083|ref|ZP_06862081.1| DNA topoisomerase IV subunit B [Citromicrobium bathyomarinum JL354]
          Length = 662

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 232/591 (39%), Positives = 339/591 (57%), Gaps = 22/591 (3%)

Query: 1   MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MSD+        +  YD+ SI++L+GL+ V++RP MYIG TD    LHH+  EVLDN++D
Sbjct: 1   MSDDLFEGTPTSSGDYDSSSIEVLEGLEPVRRRPGMYIGGTDD-RALHHLAAEVLDNSMD 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKS 113
           E++ G+A  I V L      T++DNGRG+P D H +  G S  EVI++ LH+GGKF+ K+
Sbjct: 60  EAVAGHATRIEVKLEEGNRLTIADNGRGMPIDEHPKFPGKSTLEVILSTLHSGGKFSGKA 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y  SGGLHGVGVSVVNALS   ++ + R+  +Y   F  G    P+   G+A N  GT V
Sbjct: 120 YATSGGLHGVGVSVVNALSEHTRVEVARDKTLYAQEFSKGQTLGPIETVGAAPNRRGTTV 179

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
           +F P  +IF  + F+   L    R  ++L + V+I             P E T  + GG+
Sbjct: 180 SFTPDPEIFGPRQFSAKRLFKLARSKAYLFAGVEIRWKCAPSLATDDVPEEETFKFPGGL 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNI------SIDLAMRWNDGYHENVLCFTNNIPQK 283
              ++     ++ +   P        ++       ++ A+ W          + N +P  
Sbjct: 240 ADHLTQRVAGRECVTAQPFAGSQDFPSVDGVSNGRVEWAIAWPLFSDAATSWYCNTVPTP 299

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTH  GLR+ALT+ + ++ E     K     +  DD   G   +LS+ + DP+F SQT
Sbjct: 300 DGGTHEQGLRNALTKGLRAFGELVGQKKAKD--ISADDVMAGAEVLLSVFIRDPQFQSQT 357

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K++L S E   +VE+ V D    +L ++    K ++ +V++    R   R  R++ R+  
Sbjct: 358 KDRLTSPEATKLVENAVRDHFDHFLADNMERGKALLGEVMERMDERLRRRAEREVKRKTA 417

Query: 404 VL-DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                  LPGKL DCS    K++ELF+VEGDSAGGSAKQ R R+ QAILP+RGKILNV  
Sbjct: 418 TNAKKLRLPGKLTDCSGEGDKETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVAS 477

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A  DK+ ++ EI  LI ALG G+ +D  D ++LRY +++IMTDADVDGAHI TLL+TFFF
Sbjct: 478 ASADKIRANSEIADLILALGCGVRKDC-DADQLRYDRVVIMTDADVDGAHIATLLMTFFF 536

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           ++MP ++  G L++ +PPLY +T GK  +Y +DEE   +        ++IE
Sbjct: 537 QEMPDIVRKGHLFLAQPPLYRLTAGKESRYARDEEHRRELEETVFKGKKIE 587



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADD 775
             L +T+F  G+K I + R+KGLGEMN +QL ETT++PD+RSL+R+ +     D +   +
Sbjct: 574 RELEETVFK-GKK-IEISRFKGLGEMNPAQLRETTMHPDSRSLIRITLPPEFEDRAAVKE 631

Query: 776 LFSRLMGDEVEPRREFIQENS 796
           L  +LMG   E R +FIQ  +
Sbjct: 632 LVGQLMGRNPEHRFQFIQNKA 652


>gi|226356526|ref|YP_002786266.1| DNA topoisomerase [Deinococcus deserti VCD115]
 gi|226318516|gb|ACO46512.1| putative DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase, subunit
           B) [Deinococcus deserti VCD115]
          Length = 674

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 260/607 (42%), Positives = 373/607 (61%), Gaps = 21/607 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYI-GDTDGESGLHHMIYEVLDNAIDESLEGY 60
           S +   ++Y AD I +L+G+DAV+KRP MY+ G T G  G H ++ E++DN IDE L G+
Sbjct: 19  SSSQGKTNYTADDISVLEGMDAVRKRPGMYVQGGT-GIDGYHQLLTEIIDNGIDEGLAGF 77

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V ++ DGS TV+D+GRGIP D+ K +G  A EVI + LHAGGKF   +YKVSGGL
Sbjct: 78  ATEVHVIMHADGSATVTDDGRGIPVDIMKSKGRPAIEVIFSELHAGGKFGGGAYKVSGGL 137

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPS 178
           HGVG +VVNALS++L +++ + G I+ + F  G L  PL V G         T V+F P 
Sbjct: 138 HGVGSTVVNALSTFLDVKVNKGGKIHHIRFEQGQLVQPLQVLGDTPAEITWATSVSFQPD 197

Query: 179 SDIFSVQDFNYD--TLQHRLRELSFLNSSVQISLIDKRSP----EPREITMFYKGGIEAF 232
             IF   D  +D   +++RLREL++L + ++I + D+R+       +E     KGGI  F
Sbjct: 198 PSIFKEFDNQFDYTRIRNRLRELAYL-TGLKIVVRDERTELHAGMVKEEIFHEKGGIANF 256

Query: 233 -VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHLS 290
             + +    K L   PI ++G   ++ +++A    + Y  +N+L + N I  +DGGT L+
Sbjct: 257 ARALVVDDNKLLYDQPIVMRGKHSDVEVEVAFIHANTYASDNILTYANMIRTRDGGTPLT 316

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G ++A TR +  Y       K       GDD  EG   V+S+K+ +P+F SQ K KL++S
Sbjct: 317 GFKTAYTRILNKYARDKNLIKSGHPVPSGDDLLEGIYCVVSVKLGEPQFESQAKVKLLNS 376

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E ++ V + V +  + +LEE+P   K IV+K  +A+  R+AAR+ARD+ RR   L+   L
Sbjct: 377 EAQTAVNAVVGEKFAEFLEENPRVGKTIVEKAAEAARAREAARKARDIVRRSNPLENDDL 436

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS +DP +SE+F+VEG SAGGSAK GR R  QAILPLRGKILNVE+A  +K+L 
Sbjct: 437 PGKLADCSSQDPAESEMFIVEGISAGGSAKGGRERRFQAILPLRGKILNVEKADLNKILK 496

Query: 471 SQEIGTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           + EI  LI A+G G+     +  FD++ LRYHKIIIMTDAD+DG HI TLLLTFF+R M 
Sbjct: 497 NAEIRALIGAIGAGVEGTGDRMHFDLSNLRYHKIIIMTDADMDGGHIATLLLTFFYRYMR 556

Query: 527 SLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEI--ELFCDSKGVI 582
            ++  G+LYI +PPLY I   R K   Y+   E L+ ++   +   +          G +
Sbjct: 557 PVVEAGYLYIAQPPLYRIMVGREKKGTYLYTNEDLKIHVARATKEGKKFDIQRFKGLGEM 616

Query: 583 SKNDLRN 589
           + + L +
Sbjct: 617 NADQLWD 623



 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/74 (54%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
             G+K   +QR+KGLGEMNA QLW+TT+NP+TR+L RV+I D   A+++F  LMG EV P
Sbjct: 600 KEGKK-FDIQRFKGLGEMNADQLWDTTMNPETRALKRVQIEDLIVANEVFENLMGTEVAP 658

Query: 788 RREFIQENSLPSAL 801
           R+ FIQEN+  + +
Sbjct: 659 RKTFIQENARFAEI 672


>gi|226950184|ref|YP_002805275.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226841974|gb|ACO84640.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 651

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/621 (36%), Positives = 340/621 (54%), Gaps = 23/621 (3%)

Query: 1   MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M + I     YD   +  L+ L+ V+ RP MYIG T G  GLHH I+E+LDNAIDE   G
Sbjct: 1   MEERIDNTKDYDVTKLTSLEKLEPVRVRPGMYIGST-GIKGLHHCIWEILDNAIDEISNG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           Y D   V LN D S TV DNGRGIPT +H  +  S  E++ T LH GGKFN   YK SGG
Sbjct: 60  YGDTAEVILNKDKSVTVVDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNSIYKTSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGND 168
           LHGVG SVVNALS W ++ + +   IY+  F             G     L + G   + 
Sbjct: 120 LHGVGASVVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DK 178

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  ++FS  DF +D +  RL+EL+F N  + + LID R  EP       + G
Sbjct: 179 TGTRVTFKPDKEVFSTIDFKFDVIDERLQELAFQNKGIILKLIDNRKEEPEIKEYHSERG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKD 284
           +  F+ YL+  K P+    +  +G ++  ++    ++  ++ D   EN+  + NNIP  +
Sbjct: 239 LLDFIDYLNESKAPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTE 298

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
            GTH +G ++ +TR      +K    K+  +   GDD REG T+++ IK+ +P F  QTK
Sbjct: 299 AGTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTK 358

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E  +++          W+E++   + +I+   L A+  R+  ++  +  ++K  
Sbjct: 359 TKLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIG 418

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A L GK+A C+ RD   +E  +VEGDSAGGSAKQ R R  Q+I+P +GKI+N E+ +
Sbjct: 419 KGLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQK 478

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            + +L S+E+    TA+GTG+  D++    L+Y KIII++DADVDG HIRTL +T+ +R 
Sbjct: 479 IENVLGSEELKIFNTAIGTGV-LDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRY 537

Query: 525 MPSLIHNGFLYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           M SL+ NG LYI  PPLY + +         Y  ++E L+           I+ +     
Sbjct: 538 MKSLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNDEELQKAKKQIGRGYLIQRYKGLGE 597

Query: 581 VISKNDLRNFIDDALKIDKLI 601
           +  +      ++   +  + I
Sbjct: 598 MNPEQLWETTLNPETRTLQRI 618



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                 +       L      IGR G  +QRYKGLGEMN  QLWETTLNP+TR+L R+ I
Sbjct: 562 KKGEKSVYCYNDEELQKAKKQIGR-GYLIQRYKGLGEMNPEQLWETTLNPETRTLQRITI 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS 796
            DA++A+ + S LMGD VEPR+ ++ + +
Sbjct: 621 EDAAKAEKMVSLLMGDVVEPRKNYLYKYA 649


>gi|66009643|gb|AAY42694.1| GyrB [Burkholderia dolosa]
 gi|66009656|gb|AAY42695.1| GyrB [Burkholderia dolosa]
 gi|167077367|gb|ABZ10905.1| DNA gyrase subunit B [Burkholderia dolosa]
          Length = 630

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 272/634 (42%), Positives = 388/634 (61%), Gaps = 20/634 (3%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALSSWL+L ++R G  + M F  G+              +P+ + G    + GT
Sbjct: 1   GVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQNRILETVDGEEVSPMQIIGDTE-NRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ 
Sbjct: 60  EVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 178 LRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD   LP
Sbjct: 238 VRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS
Sbjct: 298 GKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP ++  
Sbjct: 358 EQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMVER 417

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L    
Sbjct: 418 GYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSENAAAISGDALGELA 477

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              L    +I      +D   +E  +     +  S +    + A  L   L+  A K+E 
Sbjct: 478 RSYLLSQSVIDRLSRLYDPAALEAIMDGVAIDL-SSEASTEASAKALHAALHDDALKNEV 536

Query: 652 S----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +        + V+R   G     V++     +   +     +N  +        +
Sbjct: 537 RVVPSYDAVREQRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTANTFKGLIGEGAVI 596

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                 + +    S +  + +   + +S QRYKG
Sbjct: 597 KRGERSMAVKDFKSAMKWLLADAERNVSKQRYKG 630


>gi|88856909|ref|ZP_01131561.1| DNA gyrase subunit B [marine actinobacterium PHSC20C1]
 gi|88813877|gb|EAR23747.1| DNA gyrase subunit B [marine actinobacterium PHSC20C1]
          Length = 692

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/590 (38%), Positives = 323/590 (54%), Gaps = 48/590 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +S Y A  + +L+GL+AV+KRP MYIG TD   GL H ++EV+DN++DE+L+G+   I
Sbjct: 1   MASSDYSARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEVIDNSVDEALDGHGSEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           +V L+ D S  V D  RGIP D+  + G+S  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 60  SVILHADESVEVRDQARGIPVDIEPKTGLSGVEVVFTKLHAGGKFGSGSYAASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDN--------------------PLVVTGS 164
            SVVNALS  L + + R+G  + MSF  G                         L + G 
Sbjct: 120 ASVVNALSERLDVEVDRDGKTWAMSFHRGEPGTFADTGAPTPDAPFTPFVSGSELRIVGK 179

Query: 165 AGN-DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                TGT V +     IF+    F  D L  RLR+ +FL  ++ +++ D+R  EPR  +
Sbjct: 180 VPKARTGTRVRYWADRQIFTKGATFQSDGLIDRLRQTAFLVPNLTLNVTDERGDEPRHES 239

Query: 223 MFYKGGIEAFVSY------------------LDRHKKPLMQSPIRIQGS-RDNISIDLAM 263
             ++GGI  FV +                         L ++   +      +  +D+A+
Sbjct: 240 FAFEGGISEFVEHLATDPPITDIWRLTGSGGFTESVPVLQENGHMVSTEVSRDCVVDVAL 299

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRSVIGDDC 322
           RW  GY   +  F N I    GGTH++G   +L + + +  EK+    K     +  DD 
Sbjct: 300 RWGTGYDTVIKSFVNIIATPKGGTHMAGFEQSLLKFLRTETEKNSRRLKLGSDKLDKDDV 359

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI----I 378
             G T VL++++P+P+F  QTKE L +  VRS+V   + + ++        + K     +
Sbjct: 360 LAGLTVVLTVRLPEPQFEGQTKEILGTPAVRSIVAKVIANSMAEKFASTKRDDKAQASLV 419

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           + KV+     R +AR  ++  RRK  L+ +SLP KL DC   D   SELF+VEGDSA G+
Sbjct: 420 LDKVVAEMKSRISARAHKETQRRKNALESSSLPAKLVDCRSSDVANSELFIVEGDSALGT 479

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR  E QA+LP+RGKILNV++A    MLS+ E  ++I  +G G G+  FD+   RY 
Sbjct: 480 AKLGRDSEYQALLPIRGKILNVQKASISDMLSNAECASIIQVIGAGSGRS-FDLASARYG 538

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
           K+IIM DADVDGAHIRTLLLT FFR MP +I +G +Y   PPL+ I    
Sbjct: 539 KVIIMADADVDGAHIRTLLLTLFFRYMPDMIRDGRVYAAVPPLHRIVVMN 588



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 711 GDKIKITGPCSL---LDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
            + I       L   L ++   G++    +QRYKGLGEM+A QL  TT++ + R L RV 
Sbjct: 594 NETIYTYSEKELNTVLASLKKSGKRYQDPIQRYKGLGEMDADQLATTTMDRNNRVLRRVN 653

Query: 767 ITDASQADDLFSRLMGDEVEPRREFI 792
           I+DA  A  +F  LMG+EV PR+EFI
Sbjct: 654 ISDAEGAGAVFELLMGNEVAPRKEFI 679


>gi|195537257|dbj|BAG68217.1| DNA gyrase subunit B [Glaciibacter superstes]
 gi|195537259|dbj|BAG68218.1| DNA gyrase subunit B [Glaciibacter superstes]
          Length = 621

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 252/560 (45%), Positives = 361/560 (64%), Gaps = 13/560 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T G  GLHH++ E++DN++DE+L GY D I + +  DG+  V DNGRGIP D++K
Sbjct: 1   MYIGST-GPRGLHHLVSEIVDNSVDEALAGYCDTIDIRILADGAIRVEDNGRGIPVDINK 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
            +G S  EV++T LHAGGKF    Y VSGGLHGVG SVVNALSS L++ ++R+G+++  S
Sbjct: 60  AQGRSTVEVVLTVLHAGGKFGGGGYAVSGGLHGVGSSVVNALSSRLEVEVRRQGHVWRQS 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F +GI D PL   G    +TGT +TF PS++ F   +F+Y+TL+ R ++++FLN  ++++
Sbjct: 120 FADGIPDAPLKK-GEESAETGTIITFWPSAETFETIEFDYETLRVRFQQMAFLNKGLRLT 178

Query: 210 LIDKRSPEPREI------TMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISI 259
           L D+R  +  E       +  Y+ G+  +V YL+R +K        I  +       I++
Sbjct: 179 LTDERPDQADEEGGPVVNSFMYEQGLVDYVEYLNRVRKAELVNDEIISFESEDTDRKIAL 238

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+W   Y E+V  + N I   +GGTH  G R+ALT  I  Y  +    K+   ++ G
Sbjct: 239 EVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRAALTTLINKYAREKGILKEKDDNLSG 298

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+V+SIK+ +P+F  QTK KL ++E +S V+   +D L+ W   +P++AK I+
Sbjct: 299 DDVREGLTAVISIKLAEPQFEGQTKTKLGNTEAKSFVQKVASDQLADWFARNPIQAKEII 358

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +K L A+  R AAR+AR+  RRKG+L+   +PGKL DC  +DP  SE+F+VEGDSAGGSA
Sbjct: 359 RKALQAATARMAARKARETARRKGLLEGGGMPGKLKDCQSKDPSISEIFIVEGDSAGGSA 418

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
            QGR+ E QAILPLRGKILNVE+AR D+ L + E+  +ITA G GIG+D F+ +K+RYHK
Sbjct: 419 VQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMITAFGAGIGED-FNPDKVRYHK 477

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           I++M DADVDG HI TLLLT  FR M  LI  G++Y+ +PPLY +    S       +  
Sbjct: 478 IVLMADADVDGQHITTLLLTLLFRYMRPLIDLGYVYLAQPPLYRLKWSNSPHEYVYSDLE 537

Query: 560 EDYLINQSLSEEIELFCDSK 579
            D L+    +    +  D+ 
Sbjct: 538 RDALLADGAAAGKRIPKDNG 557



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/64 (57%), Positives = 52/64 (81%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  +LWETT+ P+TR+LL+V + DA+ AD++FS LMG++VE RR FIQ+N
Sbjct: 558 IQRYKGLGEMDYKELWETTMAPETRTLLQVTLDDAAAADEIFSTLMGEDVESRRNFIQKN 617

Query: 796 SLPS 799
           +   
Sbjct: 618 AKDV 621


>gi|212712616|ref|ZP_03320744.1| hypothetical protein PROVALCAL_03711 [Providencia alcalifaciens DSM
           30120]
 gi|212684832|gb|EEB44360.1| hypothetical protein PROVALCAL_03711 [Providencia alcalifaciens DSM
           30120]
          Length = 486

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 224/486 (46%), Positives = 310/486 (63%), Gaps = 8/486 (1%)

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA
Sbjct: 1   MIAVISVKVPDPKFSSQTKEKLVSSEVKTAVETLMNEKLVEYLLENPNDAKIVVGKIIDA 60

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R
Sbjct: 61  ARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 120

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           +NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTD
Sbjct: 121 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTD 180

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           ADVDG+HIRTLLLTFF+RQMP ++  G ++I +PPLY + RGK  QY+KD+E+++DYLI+
Sbjct: 181 ADVDGSHIRTLLLTFFYRQMPEIVERGHIFIAQPPLYKVKRGKQEQYIKDDEAMDDYLIS 240

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
            +L             +    L   + +     ++I+     + +  +   V       +
Sbjct: 241 IALDGAELHLSAEAPAMKGEQLEKLVVEYNAAHRIIRRLERLYPQALLNSLVYQSTLTED 300

Query: 626 SDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           + ++       A  L  RL    +           +      +  ++    GV   + L+
Sbjct: 301 ALKDSAQVEEWAKTLVARLEENEQAGSSYSYIIHENRERQLFEPTIRIRTHGVDSDYNLD 360

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738
              +     +      + I         +     +  I      L+ +    R+G+S+QR
Sbjct: 361 FDFVHGSEYRRITELGDIISGLIEEGAYIQRGERRQNIDNFEQALEWLSRESRRGLSVQR 420

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT+NP+TR ++RV I DA   D LF+ LMGD VEPRR FI+EN+L 
Sbjct: 421 YKGLGEMNPEQLWETTMNPETRRMMRVTIKDAIATDQLFTTLMGDAVEPRRAFIEENALK 480

Query: 799 -SALDI 803
            + +DI
Sbjct: 481 AANIDI 486


>gi|269799048|gb|ACZ43802.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 469

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 291/471 (61%), Positives = 370/471 (78%), Gaps = 4/471 (0%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGVGVSVVNALS
Sbjct: 1   SVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
             L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS + F+   F+YD L
Sbjct: 61  EKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTNTLFHYDIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K P+ +       
Sbjct: 120 AKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTPINKDAFHFSA 178

Query: 253 SRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
            R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK    K
Sbjct: 179 EREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGFLK 238

Query: 312 KDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L+ +L E
Sbjct: 239 KAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLAEYLLE 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLADC E+DP  SEL++V
Sbjct: 299 NPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GIG+D +
Sbjct: 359 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGIGRDEY 418

Query: 491 DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           + +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI  G++YI +PPL
Sbjct: 419 NPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPL 469


>gi|149377750|ref|ZP_01895484.1| DNA topoisomerase IV subunit B [Marinobacter algicola DG893]
 gi|149357976|gb|EDM46464.1| DNA topoisomerase IV subunit B [Marinobacter algicola DG893]
          Length = 631

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 221/568 (38%), Positives = 320/568 (56%), Gaps = 14/568 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MSQKQYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ DGS +V D+GRG+P D+HKE G+   E+I+TRLHAGGKF+Q +Y  SGGLHGVG
Sbjct: 57  DVILHSDGSLSVEDDGRGMPVDMHKEHGVPGVELILTRLHAGGKFSQGNYNFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSVVNALS+ L++ IKR+G +++M+F NG  +  L V  S    +TGT + F P    F 
Sbjct: 117 VSVVNALSTHLEVSIKRDGQLHQMTFANGHKETDLTVVDSVGKRNTGTRLKFTPDPSYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + ++ + + + +       Y+GG+  ++       + +
Sbjct: 177 SPKFSVSRLRHNLRAKAVLCPGLNVTFLQEHTGDK--DEWCYEGGLRDYLRTELADIEAV 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     S +  ++D A +W  +G    +  + N IP   GGTH++GLR+ L   +  
Sbjct: 235 PLEPFTGSFSGNKEAVDWAFQWLPEGGEAVMESYVNLIPTAQGGTHVNGLRTGLLEAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  E    VLS KM +P+FS QTKE+L S E  + +   V D
Sbjct: 295 FCEFRNLLPRG-VKLSPEDIWERCAYVLSFKMQEPQFSGQTKERLSSREAAAFISGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL +H   A+ + +  +  +       RA     RK V    +LPGKLADCS  D 
Sbjct: 354 AFSLWLNQHTDIAEALAELFISNAQ---RRLRASKKVARKKVTSGPALPGKLADCSGSDT 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELFLVEGDSAGGSAKQ R RE QA++PLRGKILN       ++L+SQE+  +  A+G
Sbjct: 411 NRSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSSEILASQEVHDIAVAIG 470

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
              G D   +  LRY+KI I+ DAD DG HI TLL   F +    ++  G +++  PPLY
Sbjct: 471 VDPGSD--KLEGLRYNKICILADADSDGLHIATLLCALFVKHFRPVVAAGHVFVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSE 570
            +  GK   Y  DE   +  +   +   
Sbjct: 529 RVDLGKETFYALDEHEKQGIIDRLAAEN 556



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           ++D + +  R+G IS+ R+KGLGEMN  QL ETT+ PDTR L+ + I D    D     L
Sbjct: 548 IIDRLAAENRRGKISVTRFKGLGEMNPLQLRETTMAPDTRRLVMLTIEDGDDTDSRMDML 607

Query: 781 MGDE-VEPRREFIQE 794
           +G +    RR +++ 
Sbjct: 608 LGKKRASDRRTWLET 622


>gi|326387941|ref|ZP_08209547.1| DNA topoisomerase IV subunit B [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207987|gb|EGD58798.1| DNA topoisomerase IV subunit B [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 670

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 240/634 (37%), Positives = 352/634 (55%), Gaps = 28/634 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            SYD  +I++L+GL+ V++RP MYIG TD E  LHH++ EVLDNA+DE++ G+A+ I +T
Sbjct: 16  ESYDGSAIEVLEGLEPVRRRPGMYIGGTD-ERALHHLVAEVLDNAMDEAVAGHANRIEIT 74

Query: 68  LNMD----GSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           L  +    G  T+SDNGRGIP D H +  G SA EVI+T LH+GGKF+ K+Y  SGGLHG
Sbjct: 75  LEEEPGTPGRITISDNGRGIPVDEHPKYPGKSALEVILTTLHSGGKFSGKAYATSGGLHG 134

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS   ++ + R   +Y   F  G+   PL   G+A N  GT VTF+P ++IF
Sbjct: 135 VGISVVNALSVLTRVEVARNKELYAQEFSRGLAQAPLARIGNAPNRRGTTVTFVPDTEIF 194

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFVSYLD 237
            +   F    L    R  ++L + V+I             P E T  + GG+   ++   
Sbjct: 195 GADARFKPARLFRLARSKAYLYAGVEIRWKCSASLAGDDVPAEATFQFPGGLADHLAEQV 254

Query: 238 RHKKPLM-------QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             ++ +        Q        ++   ++ A+ W      +   + N IP  DGGTH  
Sbjct: 255 SGRECVTTMPFAGRQDFPHGPDGQEMGRVEWAIAWPLWSDGSYSYYCNTIPTPDGGTHEQ 314

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+ALTR I ++ E     K    +   +D   G   +LS+ + DP+F SQTK++L S 
Sbjct: 315 GLRAALTRGIRAFGELIGQKKAKDIA--PEDMITGSEVMLSVFIRDPQFQSQTKDRLTSP 372

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL-DIAS 409
           E   +VE+ V D    +L ++    K ++  V++    R   +  R++ R+         
Sbjct: 373 EAARLVEAAVRDHFDHFLTDNMDRGKALLGAVMERMDERLRRKAEREVKRKTATNARKLR 432

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS     ++ELF+VEGDSAGGSAKQ R R+ QAILP+RGKILNV  A  DK+ 
Sbjct: 433 LPGKLTDCSGEGSGETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATADKIR 492

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           ++QEI  L  ALG G  +D  + + LRY +IIIMTDADVDGAHI TLL+TFFF++MP ++
Sbjct: 493 ANQEIADLGLALGCGTRKDC-NADALRYDRIIIMTDADVDGAHIATLLMTFFFQEMPEVV 551

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLR 588
             G LY+ +PPLY +T G +  Y +D+    +        +++E       G ++   LR
Sbjct: 552 RRGHLYLAQPPLYRLTSGSTSAYARDDAHRAELETRMFKGKKVEVSRFKGLGEMNPQQLR 611

Query: 589 NFI-----DDALKIDKLIKDFYPNHDKTFIEQAV 617
                      ++I    +    +  K  +++ +
Sbjct: 612 ETTMSPASRSLIRITLPTEHEQRHAVKDLVDRLM 645



 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADDLFS 778
           L+T    G+K + + R+KGLGEMN  QL ETT++P +RSL+R+ +           DL  
Sbjct: 584 LETRMFKGKK-VEVSRFKGLGEMNPQQLRETTMSPASRSLIRITLPTEHEQRHAVKDLVD 642

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
           RLMG   E R  FIQ  +  + +D
Sbjct: 643 RLMGRNPEHRFMFIQNRA--ADID 664


>gi|83648377|ref|YP_436812.1| DNA topoisomerase IV subunit B [Hahella chejuensis KCTC 2396]
 gi|83636420|gb|ABC32387.1| DNA topoisomerase IV, B subunit [Hahella chejuensis KCTC 2396]
          Length = 687

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/650 (36%), Positives = 354/650 (54%), Gaps = 22/650 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + +++Y+ADSI++L GLD V++RP MY   TD     +H+  EV+DN++DE+L G+A 
Sbjct: 55  EKLLSNNYNADSIEVLNGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHAR 110

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DGS +V+D+GRG+P D+HKEEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHG
Sbjct: 111 QVDVVLYKDGSLSVTDDGRGMPVDIHKEEGMPGVELILTKLHAGGKFSHKNYQFSGGLHG 170

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDI 181
           VGVSVVNALS  L++ I+R+G ++ ++F NG   + L V  +    +TGT VTFLP    
Sbjct: 171 VGVSVVNALSLNLEVLIRRDGKVHRITFANGDKASDLEVIDTCGKRNTGTTVTFLPDPKY 230

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F+   L+H LR  + L S ++++  D+ + E      +Y+ G++ ++S       
Sbjct: 231 FDSPKFSVLRLRHVLRAKAVLCSGLKVTFKDENTGEK--DEWYYEDGLKDYLSGATNEFV 288

Query: 242 PLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            L Q P   Q + +  ++D A++W  +G       + N IP   GGTH++GLR+ L   +
Sbjct: 289 TLPQEPFIGQMAGNTEAVDWAVQWLPEGGELVAESYVNLIPTAQGGTHVNGLRTGLLEAL 348

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      +    +  +D  +    VLS+K+ +P+FS QTKE+L S E  + V   V
Sbjct: 349 REFCEFRNLLPRG-VKLSPEDVWDRCAYVLSVKIQEPQFSGQTKERLSSRECATFVSGVV 407

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL +H  EA+ + +  ++ +  R    RA     RK +    +LPGKLADCS  
Sbjct: 408 KDSFSLWLNKHTAEAEQLAELAINNAQSRL---RAAKKVARKKITSGPALPGKLADCSGS 464

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  + ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      +++L+SQE+  +  A
Sbjct: 465 DAMRGELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSEQILASQEVHDIAVA 524

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G   G    ++  LRY KI I+ DAD DG HI TLL   F +    L+  G +++  PP
Sbjct: 525 IGVDPGSS--NLEGLRYGKICILADADSDGLHIATLLCALFVKHFRPLVEAGHVFVAMPP 582

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           LY I   K + Y  D     DY     L   +      K  + +      ++     +  
Sbjct: 583 LYRIDVAKDVYYALD-----DYEKQGILDRIVAEKKKGKPNVQRFKGLGEMNPLQLRETT 637

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           +        +  +E   I+     + D  +    AS     L      +E
Sbjct: 638 MAPDTRRLVQLTVE---IADDTEEKMDMLLAKKRASDRREWLESKGNLAE 684



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG  ++QR+KGLGEMN  QL ETT+ PDTR L+++ +  A   ++    L
Sbjct: 604 ILDRIVAEKKKGKPNVQRFKGLGEMNPLQLRETTMAPDTRRLVQLTVEIADDTEEKMDML 663

Query: 781 MGDE-VEPRREFIQE 794
           +  +    RRE+++ 
Sbjct: 664 LAKKRASDRREWLES 678


>gi|158954864|gb|ABW84389.1| DNA topoisomerase IV subunit B [Spiroplasma sp. CRAYFISH]
          Length = 559

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/566 (41%), Positives = 349/566 (61%), Gaps = 14/566 (2%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIG TD   GLHH+++E++DN+IDE+L G+A  I + ++ +   TV DNGRG+P 
Sbjct: 1   KRPGMYIGSTD-IRGLHHLVWEIVDNSIDEALAGFASEINIIIHKNNGITVKDNGRGVPI 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
             H   G S  EVI + LHAGGKF    YK SGGLHGVG SVVNALSS   + I R+  I
Sbjct: 60  GKHAS-GKSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSEFDVTIYRDKKI 118

Query: 146 YEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
             + F N G L   L   GS    TGT V F+P  +IF V DF++ T+  R+RE +FLNS
Sbjct: 119 SNIKFNNGGKLAQKLTTIGSTA-TTGTTVYFVPDPEIFKVIDFSFSTISERIRESAFLNS 177

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            ++I+L D+R+ +  E       G+E F++Y++  KKP+    I  +G   +I +++A++
Sbjct: 178 GLKITLQDERTDKYVEYLF--NNGLEEFITYMNEGKKPITP-IITFKGIEKDIDVEIALQ 234

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           ++  ++EN+L F NN+   DGG+H+ G R+ LT+ I  Y  K    K+  +++   D RE
Sbjct: 235 YSTEFNENLLSFANNVKTSDGGSHVVGFRTGLTKVINEYARKEGLLKEKDKNLDSTDTRE 294

Query: 325 GFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           G T+++S+K+P+   ++  QTK KL +S+ ++ VE+ V   +  W+ E+   A  I++K 
Sbjct: 295 GLTAIISVKIPESLIQYEGQTKGKLGTSDAKTAVENIVAKQMQFWMLENKTNAYAIIEKA 354

Query: 383 LDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           L A   ++ AR+AR+     ++       L GKL     ++ K +ELFLVEGDSAGGSAK
Sbjct: 355 LLARTAKEEARKAREAARGNKRKSNSERLLTGKLTPAQNKNKKVNELFLVEGDSAGGSAK 414

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR R+ QAIL LRGK++N E+A+   +++++EI  +I A+G G G + FD+    Y KI
Sbjct: 415 SGRDRKFQAILSLRGKVINAEKAKLQDLMNNEEINLMIHAIGAGFGNN-FDLEDANYGKI 473

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEES 558
           IIMTDAD DGAHI+TLLLTFF+R M  LI +  +YI  PPL+ IT  + K + Y  DE  
Sbjct: 474 IIMTDADTDGAHIQTLLLTFFYRFMRPLIEDKRVYIALPPLFKITNLKTKKVSYAWDENE 533

Query: 559 LEDYLINQSLSEEIELFCDSKGVISK 584
           L+  L +     E++ +     + ++
Sbjct: 534 LKTKLKHLKDKFELQRYKGLGEMNAE 559



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 731 RKGISMQRYKGLGEMNAS 748
           +    +QRYKGLGEMNA 
Sbjct: 542 KDKFELQRYKGLGEMNAE 559


>gi|148557472|ref|YP_001265054.1| DNA topoisomerase IV subunit B [Sphingomonas wittichii RW1]
 gi|148502662|gb|ABQ70916.1| DNA topoisomerase IV, B subunit [Sphingomonas wittichii RW1]
          Length = 660

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 243/667 (36%), Positives = 358/667 (53%), Gaps = 25/667 (3%)

Query: 1   MSDN-------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           MSD+         + +YDA +I++L+GL+ V++RP MYIG TD E   HH+  EVLDNA+
Sbjct: 1   MSDDLFASAPSTSSGNYDASAIEVLEGLEPVRRRPGMYIGGTD-ERAYHHLAAEVLDNAM 59

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQK 112
           DE++ G+A+ I V+L +    TV DNGRGIP D H +  G SA EVI++ LH+GGKF+ K
Sbjct: 60  DEAVAGHANRIEVSLQVGNRLTVIDNGRGIPVDPHPKFPGKSALEVILSTLHSGGKFSDK 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +Y  SGGLHGVGVSVVNALS+   + + R   ++   F  G    P+   G+A N  GT 
Sbjct: 120 AYATSGGLHGVGVSVVNALSTETVIEVARNKELFRQRFSRGTTLGPIEKLGAAPNRRGTS 179

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRL-RELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V+F P  +IF            RL R  ++L + V+I             P +    + G
Sbjct: 180 VSFTPDPEIFGPSAHFRPGRLMRLARSKAYLFAGVEIRWKCDPSLIGDDTPSDAVFQFPG 239

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           G+   +      ++         +        S++ A+ W      +   + N IP  DG
Sbjct: 240 GLSDHLREQIGDRECATSQFFSGKQDFADGQGSVEWAVAWPLWSEGSYSYYCNTIPTPDG 299

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GLR+AL + I  + E     +     V  DD   G   +LS+ + DP+F SQTK+
Sbjct: 300 GTHETGLRAALVKGIRGFAELVGNKRAKD--VTADDVVTGSEQMLSVFIRDPQFQSQTKD 357

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK-GV 404
           +L S +   +VE+ V D    +L ++    K ++  VLD    R   +  RD+ R+    
Sbjct: 358 RLTSPDAARLVENAVRDHFDHFLADNMERGKALLAFVLDRMDDRLRRKAERDIKRKTATS 417

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
                LPGKL DC+   P+ +E+F+VEGDSAGGSAKQ R R+ QAILP+RGKILNV  A 
Sbjct: 418 SRKLRLPGKLTDCANDSPEGTEMFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASAN 477

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
             K+ ++QEI  +I ALG G  +D  +++ LRY +I+IMTDADVDGAHI TLL+TFFF++
Sbjct: 478 SAKIGANQEIADIIQALGCGS-RDKCNVDLLRYERIVIMTDADVDGAHIATLLMTFFFQE 536

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL-FCDSKGVIS 583
           MP L+  G LY+ +PPLY +T G    Y +D+E   +   N+   +++E+      G ++
Sbjct: 537 MPDLVREGHLYLAQPPLYRLTAGTKSLYARDDEHRAEIEANEFKGKKVEVARFKGLGEMN 596

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
              LR    D      L       ++    E+A +  + +    +      A   AN  +
Sbjct: 597 PQQLRETTMDPATRTLLRVTLPQEYE----ERASVRDLVDRLMGKNPEHRFAFIQANAAS 652

Query: 644 FIAEKSE 650
              E+ +
Sbjct: 653 VDDEEID 659



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 8/81 (9%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK----ITDASQADDLFSRLMGDEV 785
           G+K + + R+KGLGEMN  QL ETT++P TR+LLRV       + +   DL  RLMG   
Sbjct: 581 GKK-VEVARFKGLGEMNPQQLRETTMDPATRTLLRVTLPQEYEERASVRDLVDRLMGKNP 639

Query: 786 EPRREFIQENSLPS---ALDI 803
           E R  FIQ N+       +D+
Sbjct: 640 EHRFAFIQANAASVDDEEIDV 660


>gi|68138807|gb|AAY86018.1| GyrB [Burkholderia cenocepacia]
          Length = 631

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 280/635 (44%), Positives = 396/635 (62%), Gaps = 20/635 (3%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTG 170
           VGVS VNALSSWL+L ++R+G    M F  G+              +P++VTG    + G
Sbjct: 1   VGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVFEVVDGVEVSPMLVTGDTE-NRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++
Sbjct: 60  TEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L  +     G +DN+ +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+
Sbjct: 118 GFVEYINKTKTNLHPTVFFATGEKDNVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLT 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 178 GLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   L
Sbjct: 238 EVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LS
Sbjct: 298 PGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I 
Sbjct: 358 SEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIE 417

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L   
Sbjct: 418 RGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPGENAAAISGDALGEL 477

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
               L    +I      +D   +E AV+ GV    S++E   + A  L   L+  A K+E
Sbjct: 478 ARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNE 536

Query: 651 KS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
                 +        + V+R   G     V++     +   +     +N           
Sbjct: 537 VRVVPSYDPVREQRSLNVERTHHGNVRVSVIDQEFQHTADYQQLVATANTFTGLIGEGAV 596

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +      + ++   S +  + +   + +S QRYKG
Sbjct: 597 IKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKG 631


>gi|29293589|gb|AAO67726.1| DNA gyrase subunit B [Mesoplasma photuris]
          Length = 549

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 243/556 (43%), Positives = 344/556 (61%), Gaps = 12/556 (2%)

Query: 31  YIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE 90
           YIG TD   GLHH+++E++DN+IDE+L GYA  I VTL  +GS TV+DNGRG+PT +H  
Sbjct: 1   YIGSTD-VRGLHHLVWEIVDNSIDEALAGYATEINVTLEKNGSVTVADNGRGVPTGMHA- 58

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
            G    EVI + LHAGGKF    YK SGGLHGVG SVVNALS   ++ I R+   +++SF
Sbjct: 59  TGRPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFQVTINRDKQTHQISF 118

Query: 151 IN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
            N G LD PL  TG+  N TGT V FLP   IF+   FN+ T+  RL+E + LNS ++I+
Sbjct: 119 KNGGNLDQPLTQTGNT-NRTGTIVNFLPDDGIFTTTKFNFSTISERLKESALLNSGLKIT 177

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L D+ + +  E     + G+E FV  L       +   I I+G    I  ++A+++ + Y
Sbjct: 178 LKDETTDKHVEYQF--ENGLEEFVKELCEDMT-KITDIITIKGENKRIEGEIALQYTEDY 234

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           +E VL F NN+   DGGTH++G ++ L + I  Y + +   K     +  +D REG  ++
Sbjct: 235 NETVLGFANNVKTGDGGTHITGFKTGLVKAINDYAKANKILKDKDPRLDSNDLREGLVAI 294

Query: 330 LSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++K+P+    +  QTK KL + + +S VE    + ++ WL E+   A  I++K L A  
Sbjct: 295 VTVKIPEDLIEYEGQTKGKLGTPDAKSAVEQITYNFMNFWLTENKAPATKIIEKALLARR 354

Query: 388 VRDAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
            R+ AR+AR + R  KG     ++ GKL     R  + +EL+LVEGDSAGGSAK GR R 
Sbjct: 355 AREEARKARQVIRDSKGKKQNRTMLGKLTPAQGRKKEINELYLVEGDSAGGSAKSGRDRT 414

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPLRGK++N E+A+   ++ ++EI T+ITA+G GIG + FDI+++ Y K+IIMTDA
Sbjct: 415 FQAILPLRGKVINSEKAKLADLMKNEEILTMITAIGAGIGSE-FDISEINYGKVIIMTDA 473

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG-ITRGKSLQYVKDEESLEDYLIN 565
           D DGAHI+TLLLTFFFR M  LI N  ++I  PPLY  I   +S  Y+ DE+ L  Y  N
Sbjct: 474 DTDGAHIQTLLLTFFFRYMKDLITNKHIFIALPPLYKLIFSDRSFIYLWDEDELAQYSKN 533

Query: 566 QSLSEEIELFCDSKGV 581
            +   EI+ +     +
Sbjct: 534 STKRFEIQRYKGLGEM 549



 Score = 44.6 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 64/241 (26%), Gaps = 9/241 (3%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DA      I    + F+  +  +         +          K+ Q ++D +  +    
Sbjct: 318 DAKSAVEQITYNFMNFWLTENKAPATKIIEKALLARRAREEARKARQVIRDSKGKKQ--- 374

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
               +  +           K     ++ +        K       +  +   +   V N 
Sbjct: 375 ----NRTMLGKLTPAQGRKKEINELYLVEGDSAGGSAKSGRDRTFQAIL--PLRGKVINS 428

Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFS 684
           E  +  ++    ++   +  I       +  S  N   ++           +      F 
Sbjct: 429 EKAKLADLMKNEEILTMITAIGAGIGSEFDISEINYGKVIIMTDADTDGAHIQTLLLTFF 488

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           F      I +  I      +  LI +            L        K   +QRYKGLGE
Sbjct: 489 FRYMKDLITNKHIFIALPPLYKLIFSDRSFIYLWDEDELAQYSKNSTKRFEIQRYKGLGE 548

Query: 745 M 745
           M
Sbjct: 549 M 549


>gi|73810186|gb|AAZ86066.1| DNA gyrase subunit B [Burkholderia multivorans]
          Length = 632

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 275/636 (43%), Positives = 391/636 (61%), Gaps = 20/636 (3%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169
           GVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G    + 
Sbjct: 1   GVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIGDTE-NR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG+
Sbjct: 60  GTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL
Sbjct: 118 KGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVS
Sbjct: 178 TGLRAAMTRVINKYIADNEIAKKAKVETTGDDLREGLSCVLSVKVPEPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD   
Sbjct: 238 SEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+L
Sbjct: 298 LPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP +I
Sbjct: 358 SSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMI 417

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI +PPLY +  GK  +Y+KD+  L  +++  +L     L  ++   I+ + L  
Sbjct: 418 ERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQGSELLPSENATPITGDALGE 477

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
                L    +I+     +D   +E  +     +  S +    + A  L   L+    K+
Sbjct: 478 LARSYLMSQSVIERLSRLYDPAALEAIMDGVSIDL-SSEASTEASAKALHAALHDDTLKN 536

Query: 650 EKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
           E      +        + V+R   G     V++     +   +     +   E       
Sbjct: 537 EVRVVPAYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVNTAKTFEGLIQAGA 596

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
            +      + +T   + +  + +   + +S QRYKG
Sbjct: 597 VIKRGERSMAVTDFKNAMKWLLADAERNVSKQRYKG 632


>gi|283458293|ref|YP_003362912.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18]
 gi|283134327|dbj|BAI65092.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18]
          Length = 724

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 243/684 (35%), Positives = 349/684 (51%), Gaps = 61/684 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I
Sbjct: 25  VASSNYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGFGQSI 83

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS  V D+GRGIPTD+    G+S  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 84  QVILYRDGSVEVRDDGRGIPTDIEPRTGLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVG 143

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------------DNPLVVTG 163
            SVVNALSS L +++ R    Y+MSF +GI                       + L + G
Sbjct: 144 ASVVNALSSRLDVQVDRGSKTYQMSFRHGIPGFFESGRTPKPEDPFTPATEGTDALQIVG 203

Query: 164 SAGN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------- 214
            A    TGT V +     IF     F+Y+ L  R+R+ +FL   ++I + D+R       
Sbjct: 204 RAKRGVTGTRVRYWADPQIFTPDAKFSYEDLAARVRQTAFLIPGLRICIRDERRLPGTPG 263

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------- 253
             EP E    Y GGI  FV +        +    R  GS                     
Sbjct: 264 ELEPHEEVFQYDGGISEFVEF--LAHDERITDTWRFSGSGSFTETVPVLGEDGRSQLTDV 321

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK- 312
             +  +D+A+RW  GY   V  F N I    GGTH +G    L R +  ++  +    K 
Sbjct: 322 ERDCEVDVALRWGIGYETTVRSFVNIIATPKGGTHTTGFEQGLLRVMRKHLADNARKYKV 381

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH- 371
               +  DD   G T+VL++++ +P+F  QTKE L +  VR +V   V D L A LE   
Sbjct: 382 GNDKIEKDDVLAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDALKARLESTA 441

Query: 372 ---PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
                +A  + +KV+     R +AR  ++  RRK  L+ +S+P KL DC   + + SELF
Sbjct: 442 RAEKAQAAALCEKVVSEMKTRVSARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELF 501

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSA G+A+  RS   QA+LP+RGKILN +RA    +L++ E   LI  +G G G+ 
Sbjct: 502 IVEGDSALGTARLARSSSYQALLPIRGKILNTQRASVTDVLANAECAALIQVIGAGSGRT 561

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FD++  RY K+I+MTDADVDGAHIRTLLLT F+R M  LI  G +Y   PPL+ +   +
Sbjct: 562 -FDLDSARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEVVR 620

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             +  +   +  +  +++ L    E     K  I +      +D     +  +   +   
Sbjct: 621 RGKPNEMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYKGLGEMDADQLAETTMDPRHRML 680

Query: 609 DKTFIEQA-VISGVFNCESDQEIN 631
            +  IE A      F+     E+ 
Sbjct: 681 RRIRIEDAEAAERAFSLLMGSEVA 704



 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 15/184 (8%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +     +V   ++ A  +  I   S +++         ++      V    +    
Sbjct: 530 ILNTQRASVTDVLANAECAALIQVIGAGSGRTFDLDSARYGKVIMMTDADVDGAHIRTLL 589

Query: 681 SIFSFGSKYKRIFSNRIEENYLTIL--SLICNGD------KIKITGPCSLLDTIFSIGRK 732
               +      I + R+      +    ++  G                LLD++      
Sbjct: 590 LTLFYRYMRPLIEAGRVYAAVPPLHRVEVVRRGKPNEMVYTYSEKQLHELLDSLQEQ--- 646

Query: 733 GIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788
           G+S    +QRYKGLGEM+A QL ETT++P  R L R++I DA  A+  FS LMG EV PR
Sbjct: 647 GVSYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIRIEDAEAAERAFSLLMGSEVAPR 706

Query: 789 REFI 792
           +EFI
Sbjct: 707 KEFI 710


>gi|68138816|gb|AAY86019.1| GyrB [Burkholderia cenocepacia]
          Length = 631

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 276/635 (43%), Positives = 393/635 (61%), Gaps = 20/635 (3%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTG 170
           VGVS VNALSSWL+L ++R+G    M F  G+              +P++VTG    + G
Sbjct: 1   VGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVFEVVDGVEVSPMLVTGDTE-NRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++
Sbjct: 60  TEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L  +     G +DN+ +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+
Sbjct: 118 GFVEYINKTKTNLHPTVFFATGEKDNVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLT 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 178 GLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   L
Sbjct: 238 EVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LS
Sbjct: 298 PGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I 
Sbjct: 358 SEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIE 417

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L   
Sbjct: 418 RGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPGENAAAISGDALGEL 477

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
               L    +I      +D   +E  +     +  S++E   + A  L   L+  A K+E
Sbjct: 478 ARSYLLSQSVIDRLSRLYDPAALEAVMDGVAIDL-SNEESTEASAKALHAALHDEALKNE 536

Query: 651 KS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
                 +        + V+R   G     V++     +   +     +N           
Sbjct: 537 VRVVPSYDPVREQRSLNVERTHHGNVRVSVIDQEFQHTADYQQLVATANTFTGLIGEGAV 596

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +      + ++   S +  + +   + +S QRYKG
Sbjct: 597 IKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKG 631


>gi|73810188|gb|AAZ86067.1| DNA gyrase subunit B [Burkholderia multivorans ATCC BAA-247]
          Length = 632

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 275/636 (43%), Positives = 391/636 (61%), Gaps = 20/636 (3%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169
           GVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G    + 
Sbjct: 1   GVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIGDTE-NR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG+
Sbjct: 60  GTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL
Sbjct: 118 KGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVS
Sbjct: 178 TGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD   
Sbjct: 238 SEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+L
Sbjct: 298 LPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP +I
Sbjct: 358 SSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMI 417

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI +PPLY +  GK  +Y+KD+  L  +++  +L     L  ++   I+ + L  
Sbjct: 418 ERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQGSELLPSENATPITGDALGE 477

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
                L    +I+     +D   +E  +     +  S +    + A  L   L+    K+
Sbjct: 478 LARSYLMSQSVIERLSRLYDPAALEAIMDGVSIDL-SSEASTEASAKALHAALHDDTLKN 536

Query: 650 EKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
           E      +        + V+R   G     V++     +   +     +   E       
Sbjct: 537 EVRVVPAYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVNTAKTFEGLIQAGA 596

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
            +      + +T   + +  + +   + +S QRYKG
Sbjct: 597 VIKRGERSMAVTDFKNAMKWLLADAERNVSKQRYKG 632


>gi|268590586|ref|ZP_06124807.1| DNA topoisomerase IV, B subunit [Providencia rettgeri DSM 1131]
 gi|291313974|gb|EFE54427.1| DNA topoisomerase IV, B subunit [Providencia rettgeri DSM 1131]
          Length = 631

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/645 (35%), Positives = 334/645 (51%), Gaps = 21/645 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+A++I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNAEAIEVLSGLEPVRRRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHASHI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H E  +SA E+I+ +LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVIDDGRGMPVDIHPEMKVSAVELILGQLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  +Y+++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRIEVTVRRDSQVYQIAFENGDKVEDLHVIGTCGKRNTGTSVHFWPDGSYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I+  DK +   +        G+  ++       + L
Sbjct: 177 SPKFSVTRLTHNLKAKAVLCPGVKITFKDKLNDTEQSWCY--SDGLTDYLMESIDGLEAL 234

Query: 244 MQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
              P      G  +       +   +G       + N IP   GGTH++GLR  L   + 
Sbjct: 235 PPKPFTGEFSGETEAAQW-ALLWLPEGGELLTESYVNLIPTALGGTHVNGLRQGLLDAMR 293

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + E      +    +  DD  E  T VLS+KM DP+F+ QTKE+L S +  + V   V 
Sbjct: 294 EFCEFRNILPRG-VKLSADDIWERCTYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 352

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADCS +D
Sbjct: 353 DAFSLWLNQNVQVAEQLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCSSQD 409

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L+SQE+  +  ++
Sbjct: 410 LSMTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDI--SV 467

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
             GI  DS D+++LRY KI I+ DAD DG HI TLL   F R  P+L+  G +Y+  PPL
Sbjct: 468 AIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKAGHVYMAMPPL 527

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I  GK   Y  DE      L   S           KG+   N L+        +D   
Sbjct: 528 YRIDLGKETFYALDESEKNAVLERLSRKRGKPNVQRFKGLGEMNPLQ---LRETTLDPNT 584

Query: 602 KDFYPNHDKT--FIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +           + E   +  +   +   E   +   +  +    
Sbjct: 585 RRLVQLIIDDENYQETLAVMDMLLAKKRSEDRRNWLQEKGDIAEI 629



 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDE-VE 786
           ++G  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D    +   +   L+  +  E
Sbjct: 555 KRGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLIIDDENYQETLAVMDMLLAKKRSE 614

Query: 787 PRREFIQENSLPSALDI 803
            RR ++QE    + +D+
Sbjct: 615 DRRNWLQEKGDIAEIDV 631


>gi|330814224|ref|YP_004358463.1| topoisomerase IV subunit B [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487319|gb|AEA81724.1| topoisomerase IV subunit B [Candidatus Pelagibacter sp. IMCC9063]
          Length = 649

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/579 (39%), Positives = 321/579 (55%), Gaps = 15/579 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + ++Y A  I++L+GL  V+KRP MYIG TD E+  HH+  E++DN +DE + G A  I
Sbjct: 3   TKKNNYSAKDIEVLEGLAPVRKRPGMYIGGTD-ETAYHHLANEIIDNCMDEVVAGEASEI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF-NQKSYKVSGGLHGV 123
           TV LN +GS TV DNGRGIP D H ++  SA EV+MT LH+GGKF     Y  S GLHGV
Sbjct: 62  TVILNKNGSLTVMDNGRGIPIDKHPKKNKSALEVVMTTLHSGGKFKEDGVYTTSAGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G+SVVNALSS +K+ + ++  I+   +  G   N L   G+  +  GT VTFLP   IF 
Sbjct: 122 GLSVVNALSSKMKVEVFKKKKIHFQEYSRGKPLNKLAQKGTYPSPHGTRVTFLPDDQIFG 181

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYL 236
               F    +    R  +FL   V+I          ++   P + T+FY  G+E ++   
Sbjct: 182 KDLIFLPIKIYETCRNKAFLFKGVKIHWECDKSLLSRKENIPNKDTLFYPEGLEQYLKSE 241

Query: 237 DRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
             + K +      ++G        ++L ++W+D  +     F N +P  +GGTH SG R 
Sbjct: 242 LSNAKKVHDKFCSLKGDFQDKKGKVELVIQWHDNKNNFTKSFANTVPTSNGGTHESGFRG 301

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            + + I  Y +        K     +D     + ++S+ + +P F  QTK KL SS V  
Sbjct: 302 GVAKAIRKYAKLKNNKTVIK--ASQEDIFSNASYIVSVFIGNPEFEGQTKNKLSSSFVLK 359

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
             +  V+     WL  +   AK I+  + +    R+      +   R+       LPGKL
Sbjct: 360 YCDQSVSILFEDWLNRNSKAAKSILTFIEEKIRERNLYELN-NNVERQTSFRKIRLPGKL 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+    + +ELF+VEGDSAGGSAKQ R R  QAILPLRGKILNV+ +   K+L++ EI
Sbjct: 419 ADCASDKTEGTELFIVEGDSAGGSAKQARDRYTQAILPLRGKILNVKNSNTAKILANNEI 478

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           G L+ ALG   G   +    LRY KIIIMTDADVDG HI TLLLTFFF +MP LI +G L
Sbjct: 479 GNLLQALGCQRGNK-YVRKDLRYEKIIIMTDADVDGDHISTLLLTFFFIEMPELIKDGRL 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           ++  PPLY I+ G    YV+D+++ +  + +   + +IE
Sbjct: 538 FMAVPPLYKISSGAQTFYVRDDKAKDKIVKSFKKNAKIE 576



 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 12/205 (5%)

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            + +  +   +   + N ++     +   +++ N L  +  +    +       + ++  
Sbjct: 449 RYTQAIL--PLRGKILNVKNSNTAKILANNEIGNLLQALGCQRGNKYVRKDLRYEKIIIM 506

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
               V    +      F F    + I   R+      +  +        +       D I
Sbjct: 507 TDADVDGDHISTLLLTFFFIEMPELIKDGRLFMAVPPLYKISSGAQTFYVRD-DKAKDKI 565

Query: 727 FSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRV-----KITDASQADDLFSR 779
               +K   I + R+KGLGEM  +QL ETT+N +TR+L++V     KI        L + 
Sbjct: 566 VKSFKKNAKIEIGRFKGLGEMMPAQLKETTMNKETRNLIKVSVPTNKIK-YKVTSKLIND 624

Query: 780 LMGDEVEPRREFIQENS-LPSALDI 803
           LMG + + R +FI EN+     LDI
Sbjct: 625 LMGKDADLRLKFISENAGKILNLDI 649


>gi|19909671|dbj|BAB87031.1| DNA gyrase subunit B [Arhodomonas aquaeolei]
          Length = 452

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 273/455 (60%), Positives = 346/455 (76%), Gaps = 3/455 (0%)

Query: 45  IYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           ++EV DN+IDE+L GY   + + ++ D S TV+DNGRGIP D+H EEG SAAEVIMT LH
Sbjct: 1   VFEVADNSIDEALAGYCTEVAIVIHGDNSVTVTDNGRGIPVDIHTEEGRSAAEVIMTVLH 60

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  L+L IK+ G I+   + +G   +PL V G 
Sbjct: 61  AGGKFDNNSYKVSGGLHGVGVSVVNALSERLRLVIKKHGQIHVQEYRDGEPVSPLKVVGE 120

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
                GT++TF PSS+ F+  DFNYD L  R RELSFLN  V+I L D+RS +       
Sbjct: 121 TDEQ-GTQITFHPSSETFTNIDFNYDILAKRFRELSFLNPGVRIVLKDERSDKE--DVFE 177

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y GGI AFV +L+++K+PL  +   +   R+ + +++AM+WND Y E++ CFTNNIPQ+D
Sbjct: 178 YAGGIRAFVEHLNKNKRPLHPAVFHLSTQREEVQVEVAMQWNDSYQESIFCFTNNIPQRD 237

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++G R+ALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK
Sbjct: 238 GGTHMAGFRAALTRTLNAYMEAEGYTKKLKVNPSGDDIREGLTAVVSVKVPDPKFSSQTK 297

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+  VES + + L  +L EHP +AK I++KV+DA+  RDAARRAR++TRRKG 
Sbjct: 298 DKLVSSEVKGPVESALAEALHDFLYEHPQDAKAIIEKVIDAARARDAARRAREMTRRKGA 357

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LDIA LPGKLADC ERDP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR
Sbjct: 358 LDIAGLPGKLADCQERDPANSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKAR 417

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           FDKMLSS E+GTLITALG GIG+D FD +KLRYH+
Sbjct: 418 FDKMLSSAEVGTLITALGCGIGKDEFDPDKLRYHR 452


>gi|241760961|ref|ZP_04759050.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374580|gb|EER64041.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 660

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/632 (37%), Positives = 341/632 (53%), Gaps = 29/632 (4%)

Query: 1   MSDNIQNS-------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           MSD++  S       +Y+ADSI++L+GL+ +++RP MYIG TD E   HH+  EVLDNA+
Sbjct: 1   MSDDLFKSTVTPSADNYNADSIEVLEGLEPIRRRPGMYIGGTD-ERAFHHLAAEVLDNAM 59

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQK 112
           DE++ G+A  I VTL+     T++DNGRGIP D H +    SA EVI+T LH+GGKF+ K
Sbjct: 60  DEAVAGHATRIEVTLDTGDRLTITDNGRGIPIDPHPKFPDKSALEVILTTLHSGGKFSNK 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +Y  SGGLHGVG+SVVNALSS   + + R   +Y  SF  G+    L   G+A N  GT 
Sbjct: 120 AYATSGGLHGVGISVVNALSSETTVEVARNRLLYRQSFSRGVPLGALEQVGNAPNRRGTS 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFY 225
           V+F+P ++IF     F    L   +R  ++L + V+I          +  PE   I    
Sbjct: 180 VSFIPDTEIFGKTLHFKPAKLYRMVRSKAYLFAGVEIIWRCAPELASEDVPEKAVIHF-- 237

Query: 226 KGGIEAFVSYLDRHKKPLMQSPI----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
            GG+  ++      +    +                S++ A+ W      + L + N IP
Sbjct: 238 PGGLADYLKEEVGKRDCATKEFFTGRQSFSDEEG--SVEWAVAWPLWSEGSSLYYCNTIP 295

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH  GLR AL R + ++ E     K    +   +D   G   VLS+ + +P+F S
Sbjct: 296 TPAGGTHEQGLRLALVRGLRAFGELVGLKKAKDIA--PEDVIVGADMVLSLFIREPQFQS 353

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK++L + +V  +VE  + D    +L +     + ++  +++    R   R  RD+ R+
Sbjct: 354 QTKDRLTNPQVAGLVEKAIRDHFDHFLTDDMDRGRALLGFIMERMDERLRRRAERDIKRK 413

Query: 402 K-GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
                    LPGKL DCS+     SELF+VEGDSAGGSAKQ R R+ QAILP+RGKILNV
Sbjct: 414 TVTAARKLRLPGKLTDCSQDTADNSELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNV 473

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             A   K+L++QEI  +  ALG G+ +D  D   LRY +IIIM+DADVDGAHI TLL+TF
Sbjct: 474 AAATNAKILANQEISDITQALGCGV-RDRCDPQALRYDRIIIMSDADVDGAHIATLLMTF 532

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL-FCDSK 579
           FFR+M  ++ NG +Y+ +PPLY +  G    Y +D+    +         ++E+      
Sbjct: 533 FFREMTEIVRNGHIYLAQPPLYRLKAGAKTLYARDDNHRVELEKTVFKGRKVEVARFKGL 592

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           G ++   LR    D      L      ++   
Sbjct: 593 GEMNPQQLRETTMDPKTRSLLRVTLPKDYQDR 624



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 13/114 (11%)

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
           +        +L    D  ++     L  T+F  GRK + + R+KGLGEMN  QL ETT++
Sbjct: 553 LYRLKAGAKTLYARDDNHRV----ELEKTVFK-GRK-VEVARFKGLGEMNPQQLRETTMD 606

Query: 757 PDTRSLLRVK----ITDASQADDLFSRLMGDEVEPRREFIQENSL---PSALDI 803
           P TRSLLRV       D  +  DL  RLMG + E R  FIQ N+     +A+DI
Sbjct: 607 PKTRSLLRVTLPKDYQDRQEISDLVDRLMGRQPEHRFAFIQANAAQFDEAAMDI 660


>gi|106734223|gb|ABF82588.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. 5138]
          Length = 496

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 254/491 (51%), Positives = 347/491 (70%), Gaps = 4/491 (0%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIG T    GLHH+++E++DN+IDE+L GY D I VT+    S  V DNGRGIP 
Sbjct: 1   KRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ +KR   +
Sbjct: 60  DIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204
           Y  ++  G+    L + G    +TGT + F P  +IF    +++YD L  RLREL+FLN 
Sbjct: 120 YYQAYHRGVPVADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            + I + D R+ EP   +  Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A++
Sbjct: 179 GLTIEITDDRADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +NDG+  N+  FTNNIP  +GGTH +G ++ALTR I  Y +K    K+   ++ G+D RE
Sbjct: 239 YNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+++SIK P+P+F  QTK KL +S+ R+  ++  +     ++ E+P  A+ IV+K + 
Sbjct: 299 GMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMM 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR+LTRRKGVL+++SLPGKLADCS RD   SE+++VEGDSAGGSAK GR 
Sbjct: 359 ASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRD 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R  QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMT
Sbjct: 419 RHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMT 477

Query: 505 DADVDGAHIRT 515
           DADVDGAHIRT
Sbjct: 478 DADVDGAHIRT 488


>gi|326796567|ref|YP_004314387.1| DNA topoisomerase IV, B subunit [Marinomonas mediterranea MMB-1]
 gi|326547331|gb|ADZ92551.1| DNA topoisomerase IV, B subunit [Marinomonas mediterranea MMB-1]
          Length = 632

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 230/638 (36%), Positives = 350/638 (54%), Gaps = 13/638 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y+A SI++L GL+ V+KRP MY   T+     +H+  EV+DN++DE+L G+AD I
Sbjct: 1   MSVKEYNAGSIEVLSGLEPVQKRPGMY---TETTRP-NHLGQEVIDNSVDEALAGHADKI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DGS +V DNGRG+P D+H EEG+S  E+I+T+LHAGGKF+  SY+ SGGLHGVG
Sbjct: 57  EVTLYKDGSLSVEDNGRGMPVDIHPEEGVSGVELILTKLHAGGKFSGDSYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSVVNALS+ L + +KR+G  Y ++F +G   + L   G+    +TGT+V F      F 
Sbjct: 117 VSVVNALSNQLDVWVKRDGKQYHIAFADGFKTSELAEVGTVGKKNTGTKVKFKADPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H L+  + L S + +  +D+   E      FY+ G++ +++  ++  + L
Sbjct: 177 SAKFSLSRLRHLLKAKAVLCSGLHVVFVDQSGSEETREEWFYQDGLKDYLALANKGYELL 236

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P           +D A++W  +G       + N IP   GGTH++GLR+ L   I  
Sbjct: 237 PEEPFIGSLIETTQGVDWAVQWLPEGGELITESYVNLIPTAQGGTHVNGLRTGLLEAIRE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + +      +    +  +D  E  + VLS K+ +P+FS QTKE+L S ++   + + V D
Sbjct: 297 FCDFHNLLPRG-VKLTAEDVWERCSYVLSAKLQEPQFSGQTKERLSSRQIVPFITATVKD 355

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL +H  +A+ I   ++ ++       RA     RK V    +LPGKLADC+ +D 
Sbjct: 356 AFSLWLNKHVEDAQKIADVIISSAQ---KRMRASKKVVRKKVTQGPALPGKLADCAGQDS 412

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQEI  +  ALG
Sbjct: 413 SRSELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNSWEVDQSQVLASQEIHDISVALG 472

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
              GQ+  D++ LRY K+ I+ DAD DG HI TLL   F +  P+L+++G +++  PPLY
Sbjct: 473 VDPGQE--DLSGLRYGKVCILADADSDGLHIATLLCALFVKHFPTLVNSGHVFVAMPPLY 530

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  D+E  +D +I++  +E+     D +      ++         +    +
Sbjct: 531 RIDIGKEVHYALDDEE-KDIIIHKIEAEKKRGKLDVQRFKGLGEMNPPQLRETTMAPDTR 589

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                     +E   +      +              N
Sbjct: 590 RLIQLTMDDPLETGEVLDKLLSKKRAADRKDWLETYGN 627



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 725 TIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
            I +  ++G + +QR+KGLGEMN  QL ETT+ PDTR L+++ + D  +  ++  +L+  
Sbjct: 553 KIEAEKKRGKLDVQRFKGLGEMNPPQLRETTMAPDTRRLIQLTMDDPLETGEVLDKLLSK 612

Query: 784 E-VEPRREFIQE 794
           +    R+++++ 
Sbjct: 613 KRAADRKDWLET 624


>gi|49475554|ref|YP_033595.1| DNA topoisomerase IV subunit B [Bartonella henselae str. Houston-1]
 gi|49238360|emb|CAF27584.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1]
          Length = 685

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 238/588 (40%), Positives = 341/588 (57%), Gaps = 16/588 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            + Q + Y+A SI++L+GL+ V+ RP MYIG TD    LHH+  E++DNA+DE++ GYAD
Sbjct: 39  KDTQENDYNALSIRVLEGLEPVRLRPGMYIGGTDS-KALHHLFAEIIDNAMDEAVAGYAD 97

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
            I V+L  +G  TV+DNGRGIP + H +  G S  EVIMT+LH+GGKF+ K+Y+ +GGLH
Sbjct: 98  FIDVSLEKNGYLTVTDNGRGIPVENHPQMPGKSTLEVIMTQLHSGGKFDGKAYQTAGGLH 157

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS ++++ + RE  +Y   F  GI  + L   G   N  GT V F P S I
Sbjct: 158 GVGISVVNALSDYMEVEVARERKLYRQRFSRGIPQSGLEDLGDVYNRRGTRVRFHPDSKI 217

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVS 234
           F     F+ + +    R  ++L   V+I               P +    +  G++ ++ 
Sbjct: 218 FGEKAAFDPEKIYKMARSKAYLFGGVKIRWNCDPVLLENTKNIPEKAVFHFPDGLKDYLL 277

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
              + +  +       +      + S++ A+ W+ G   +V  + N IP  +GGTH  GL
Sbjct: 278 SSLKDEYRVTSEIFSGKTKHSNGHGSVEWAIAWHGG-DSHVQSYCNTIPTGEGGTHEMGL 336

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R AL R + SY E     +     +  DD     +++LS+ + DP F  QTK++L + E 
Sbjct: 337 RQALLRGLKSYAELIGNKRAA--IITSDDVMISTSAILSVFIKDPEFVGQTKDRLATIEA 394

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE+ + D    WL   P E+  ++  V++ +  R   R+ R+   RK  +    LPG
Sbjct: 395 QRIVENAIRDPFDHWLTNSPQESTKLLDWVVERAEERVRRRQDRE-INRKTAVRKLRLPG 453

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +KM SSQ
Sbjct: 454 KLADCSQNCAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAAHEKMNSSQ 513

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            IG LI ALG G  +  +    LRY +IIIMTDADVDGAHI +LL+TFFF++MP LI  G
Sbjct: 514 TIGDLILALGCGT-RSKYREKDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIRQG 572

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            LY+  PPLY I++G  + Y +D+   ++ L  +   +        KG
Sbjct: 573 HLYLAVPPLYRISQGGKVAYARDDTHKDELLKTEFTGKAKIEIGRFKG 620



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFS-----FGSKYKRIFSNRIEENYLTILS 706
                    D+  +RI   +     ++G+ I S     F  +   +         +  L 
Sbjct: 525 GTRSKYREKDLRYERII--IMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLY 582

Query: 707 LICNGDKIKITGPCSLLDTIFSI---GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
            I  G K+      +  D +      G+  I + R+KGLGEM A QL ETT++P  R+LL
Sbjct: 583 RISQGGKVAYARDDTHKDELLKTEFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLL 642

Query: 764 RVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           RV I   +  +  +    LMG + E R  FIQENS  +  LDI
Sbjct: 643 RVSINAEEVQETKNTVESLMGTKPEARFRFIQENSTFASNLDI 685


>gi|304372931|ref|YP_003856140.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis HUB-1]
 gi|304309122|gb|ADM21602.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis HUB-1]
          Length = 649

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 239/611 (39%), Positives = 352/611 (57%), Gaps = 11/611 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           SSY  +++++LKGLDAV+KRP MYIG TD E GLHH+++E++ NA+DE+L G+A  I V+
Sbjct: 2   SSYTVENLKVLKGLDAVRKRPGMYIGSTDFE-GLHHLVWEIVSNAVDEALAGFAKNIYVS 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GS  V D+GRGIP + H   G+S  E++ T LHAGGKF+ + YK SGGLHGVG SV
Sbjct: 61  LEENGSIVVEDDGRGIPIEKH-TSGLSGVELVFTELHAGGKFSDEVYKNSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSS L + + +    Y+  FING             N  GT V F P   IF+   F
Sbjct: 120 VNALSSKLIVNVYKNNKNYQTKFINGGQIEQRTTVVGDSNKKGTRVQFWPDKKIFAQNKF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++D +  RLRE  FL S ++I+L  +     ++   F+K GI+ FV ++++ K  L +  
Sbjct: 180 SFDMISERLRETCFLISELKITL--EDQITFQKEAFFFKNGIKDFVEFINQGKTLLNKQA 237

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             I  +++ I++++A ++ D Y ++++ F NNI  K GGTH  GL+ AL R    + ++ 
Sbjct: 238 ALINETQEKINVEIAFQYTDSYSDSIISFVNNIKTKSGGTHELGLKQALVRVFNDFAQQK 297

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              K    ++   D +EG T VLS+K+P+    F  QTK+KL +   +SVVE      + 
Sbjct: 298 SIFKNKTHTLDILDIKEGLTLVLSLKVPEFLLEFVGQTKDKLGTQIAKSVVEDICYKQVL 357

Query: 366 AWLEEHPLEAKIIVKKVLDA--SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            WL ++  +A  I+ K+ DA    +     +      +    +   L GKLA    ++  
Sbjct: 358 LWLNKNQQDANKIINKIKDAFDQRMSTKLSKIESKKSKDASKEKKILSGKLAPAQSKNKA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + ELF+VEG+SAGGSAK GR R+ QAILPL+GKI+N E+ R   +L + EI  +I++LGT
Sbjct: 418 EKELFIVEGESAGGSAKLGRDRKFQAILPLKGKIINAEKTRLIDLLKNNEIVAIISSLGT 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG   F+IN L Y KIIIMTDAD DGAHI+ LLLTF FR M  LI  G +YI +PPLY 
Sbjct: 478 GIG-QDFNINNLEYDKIIIMTDADTDGAHIQILLLTFIFRYMKELIEKGHVYIAQPPLYK 536

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI--DDALKIDKLI 601
           I+           E+    +I    + +++ +     + ++      +  +    I   I
Sbjct: 537 ISFKNKEAVYAWNENELKQIIENKSNFDLQRYKGLGEMNAQQLWDTTMNPEKRTLIKVKI 596

Query: 602 KDFYPNHDKTF 612
           +D      + F
Sbjct: 597 EDLAIAERRIF 607



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 1/73 (1%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L  I    +    +QRYKGLGEMNA QLW+TT+NP+ R+L++VKI D + A+     LMG
Sbjct: 553 LKQIIEN-KSNFDLQRYKGLGEMNAQQLWDTTMNPEKRTLIKVKIEDLAIAERRIFTLMG 611

Query: 783 DEVEPRREFIQEN 795
           D+++ R+++I+ N
Sbjct: 612 DKIDIRKQWIKNN 624


>gi|260753072|ref|YP_003225965.1| DNA topoisomerase IV subunit B [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552435|gb|ACV75381.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 660

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/632 (37%), Positives = 341/632 (53%), Gaps = 29/632 (4%)

Query: 1   MSDNIQNS-------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           MSD++  S       +Y+ADSI++L+GL+ +++RP MYIG TD E   HH+  EVLDNA+
Sbjct: 1   MSDDLFKSTVTPSADNYNADSIEVLEGLEPIRRRPGMYIGGTD-ERAFHHLAAEVLDNAM 59

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQK 112
           DE++ G+A  I VTL+     T++DNGRGIP D H +    SA EVI+T LH+GGKF+ K
Sbjct: 60  DEAVAGHATRIEVTLDTGDRLTITDNGRGIPIDPHPKFPDKSALEVILTTLHSGGKFSNK 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +Y  SGGLHGVG+SVVNALSS   + + R   +Y  SF  G+    L   G+A N  GT 
Sbjct: 120 AYATSGGLHGVGISVVNALSSETTVEVARNRLLYRQSFSRGVPLGALEQVGNAPNRRGTS 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFY 225
           V+F+P ++IF     F    L   +R  ++L + V+I          +  PE   I    
Sbjct: 180 VSFIPDTEIFGKTLHFKPAKLYRMVRSKAYLFAGVEIIWRCAPELASEDVPEKAVIHF-- 237

Query: 226 KGGIEAFVSYLDRHKKPLMQSPI----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
            GG+  ++      +    +                S++ A+ W      + L + N IP
Sbjct: 238 PGGLADYLKEEVGKRDCATKEFFTGRQSFSDEEG--SVEWAVAWPLWSEGSSLYYCNTIP 295

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH  GLR AL R + ++ E     K    +   +D   G   VLS+ + +P+F S
Sbjct: 296 TPAGGTHEQGLRLALVRGLRAFGELVGLKKAKDIA--PEDVIVGADMVLSLFIREPQFQS 353

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK++L + +V  +VE  + D    +L +     + ++  +++    R   R  RD+ R+
Sbjct: 354 QTKDRLTNPQVAGLVEKAIRDHFDHFLTDDMDRGRALLGFIMERMDERLRRRAERDIKRK 413

Query: 402 K-GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
                    LPGKL DCS+     SELF+VEGDSAGGSAKQ R R+ QAILP+RGKILNV
Sbjct: 414 TVTAARKLRLPGKLTDCSQDAADNSELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNV 473

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             A   K+L++QEI  +  ALG G+ +D  D   LRY +IIIM+DADVDGAHI TLL+TF
Sbjct: 474 AAATNAKILANQEISDITQALGCGV-RDRCDPQALRYDRIIIMSDADVDGAHIATLLMTF 532

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL-FCDSK 579
           FFR+M  ++ NG +Y+ +PPLY +  G    Y +D+    +         ++E+      
Sbjct: 533 FFREMTEIVRNGHIYLAQPPLYRLKAGAKTLYARDDNHRVELEKTVFKGRKVEVARFKGL 592

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           G ++   LR    D      L      ++   
Sbjct: 593 GEMNPQQLRETTMDPKTRSLLRVTLPKDYQDR 624



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 13/114 (11%)

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
           +        +L    D  ++     L  T+F  GRK + + R+KGLGEMN  QL ETT++
Sbjct: 553 LYRLKAGAKTLYARDDNHRV----ELEKTVFK-GRK-VEVARFKGLGEMNPQQLRETTMD 606

Query: 757 PDTRSLLRVK----ITDASQADDLFSRLMGDEVEPRREFIQENSL---PSALDI 803
           P TRSLLRV       D  +  DL  RLMG + E R  FIQ N+     +A+DI
Sbjct: 607 PKTRSLLRVTLPKDYQDRQEISDLVDRLMGRQPEHRFAFIQANAAQFDEAAMDI 660


>gi|68138756|gb|AAY86010.1| GyrB [Burkholderia cenocepacia]
          Length = 631

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 279/635 (43%), Positives = 395/635 (62%), Gaps = 20/635 (3%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALSSWL+L ++R+G    M F  G+              +P++VTG    + GT
Sbjct: 1   GVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ 
Sbjct: 60  EVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 178 LRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LP
Sbjct: 238 VRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS
Sbjct: 298 GKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  
Sbjct: 358 EQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIER 417

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L    
Sbjct: 418 GYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELA 477

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              L    +I      +D   +E AV+ GV    S++E   + A  L   L+  A K+E 
Sbjct: 478 RSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEV 536

Query: 652 S----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +        + V+R   G     V++     +   +     +N  +        +
Sbjct: 537 RVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVI 596

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742
                 + +    S +  + +   + +S QRYKGL
Sbjct: 597 KRGERSMAVADFKSAMKWLLADAERNVSKQRYKGL 631


>gi|309811435|ref|ZP_07705222.1| DNA gyrase, B subunit [Dermacoccus sp. Ellin185]
 gi|308434742|gb|EFP58587.1| DNA gyrase, B subunit [Dermacoccus sp. Ellin185]
          Length = 713

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 265/663 (39%), Positives = 391/663 (58%), Gaps = 41/663 (6%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ YDAD+IQ+L+GL+AV+KRP MYIG T GE GLHH+++E++DN++DE+L G+A  + V
Sbjct: 39  DTEYDADAIQVLEGLEAVRKRPGMYIGST-GERGLHHLVWEIVDNSVDEALAGHATRVDV 97

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  D    VSDNGRGIPT  ++   +S  E+++T+LHAGGKF    YKVSGGLHGVG S
Sbjct: 98  TILPDNGIRVSDNGRGIPTGRNEAYDMSTVELVLTQLHAGGKFGGGGYKVSGGLHGVGSS 157

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L+  ++++G++Y M F  G+     +      ++TGT +TF  S +IF    
Sbjct: 158 VVNALSTRLEAEVRQKGHVYRMEFAGGVPLGE-LREEEESDETGTTITFWASPEIFETTV 216

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSP------------------------------ 216
           ++++T++ R ++++FLN  + ISL D+R                                
Sbjct: 217 YDFETIRARFQQMAFLNKGLTISLTDERPDAVDEGAAEEAAADAAAEGADAAQADEAAAR 276

Query: 217 --EPREITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAMRWNDGYH 270
             + R +T  Y  G+  +V +L+  K  + + +  I  +       +S+++AM+W   Y 
Sbjct: 277 AKKGRSVTYCYADGLLDYVKHLNSSKRAEVVNEDIIAFEHEDAERYLSVEVAMQWTTAYS 336

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  + N I   +GGTH  G R+A+T+ +  +  +    K+   ++ GDD REG T+V+
Sbjct: 337 ESVHTYANTINTHEGGTHEEGFRAAMTKLVNDFARREKLLKEKDDNLTGDDIREGLTAVI 396

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ +P+F  QTK KL +SEV+  V++ V D    WL+ HP E K IV K + A+  R 
Sbjct: 397 SVKLAEPQFEGQTKTKLGNSEVKGFVQTAVRDEFDHWLQMHPREGKAIVSKAIAAASARM 456

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+  RRKG+L+   LPGKL DC  +DP  SE+F+VEGDSAGGSA QGR+  NQAI
Sbjct: 457 AARKARETARRKGLLESGGLPGKLRDCQSKDPSISEVFIVEGDSAGGSAVQGRNPFNQAI 516

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LP+RGKILNVE+AR DK+L++ E+  LI+  GTGIG+D F I K RYHKI++M DADVDG
Sbjct: 517 LPIRGKILNVEKARLDKVLANNEVQGLISGFGTGIGED-FTIEKARYHKIVLMADADVDG 575

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            HIRTLLLT  FR M  LI  G++Y+ +PPLY I            +   D +I+   S+
Sbjct: 576 MHIRTLLLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNHEHEFAFTDRERDAMIDAGQSK 635

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
              L  ++     K      ++     +  +        +  +E A  +         E 
Sbjct: 636 GWRLPKENGVQRYKG--LGEMNYQELWETTMDPESRTLLQVTLEDAAAADEIFAVLMGED 693

Query: 631 NVS 633
             S
Sbjct: 694 VES 696



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 55/69 (79%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LWETT++P++R+LL+V + DA+ AD++F+ LMG++VE RR FIQ N
Sbjct: 645 VQRYKGLGEMNYQELWETTMDPESRTLLQVTLEDAAAADEIFAVLMGEDVESRRSFIQRN 704

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 705 AKDVRFLDI 713


>gi|106734229|gb|ABF82591.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. Indian
           Stream]
          Length = 493

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 258/496 (52%), Positives = 352/496 (70%), Gaps = 4/496 (0%)

Query: 29  SMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH 88
            MYIG T    GLHH+++E++DN+IDE+L GY D I VT+    S  V DNGRGIP D+ 
Sbjct: 1   GMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVDIQ 59

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
           ++ G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ +KR   +Y  
Sbjct: 60  EKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKLYYQ 119

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQ 207
           ++  G+    L + G    +TGT + F P  +IF    +++YD L  RLREL+FLN  + 
Sbjct: 120 AYHRGVPVADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNKGLT 178

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           I + D R+ EP   +  Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A+++ND
Sbjct: 179 IEITDDRADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQYND 238

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G+  N+  FTNNIP  +GGTH +G ++ALTR I  Y +K    K+   ++ G+D REG T
Sbjct: 239 GFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGEDVREGMT 298

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++SIK P+P+F  QTK KL +S+ R+  ++  +     ++ E+P  A+ IV+K + AS 
Sbjct: 299 AIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMMASR 358

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA+RAR+LTRRKGVL+++SLPGKLADCS RD   SE+++VEGDSAGGSAK GR R  
Sbjct: 359 ARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRDRHF 418

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMTDAD
Sbjct: 419 QAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMTDAD 477

Query: 508 VDGAHIRTLLLTFFFR 523
           VDGAHIRTLLLTFF+R
Sbjct: 478 VDGAHIRTLLLTFFYR 493


>gi|330723480|gb|AEC45850.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis MCLD]
          Length = 649

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 240/611 (39%), Positives = 352/611 (57%), Gaps = 11/611 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           SSY  +++++LKGLDAV+KRP MYIG TD E GLHH+++E++ NA+DE+L G+A  I V+
Sbjct: 2   SSYTVENLKVLKGLDAVRKRPGMYIGSTDFE-GLHHLVWEIVSNAVDEALAGFAKNIYVS 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GS  V D+GRGIP + H   G+S  E++ T LHAGGKF+ + YK SGGLHGVG SV
Sbjct: 61  LEENGSIVVEDDGRGIPIEKH-TSGLSGVELVFTELHAGGKFSDEVYKNSGGLHGVGSSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSS L + + +    Y+  FING             N  GT V F P   IF+   F
Sbjct: 120 VNALSSKLIVNVYKNNKNYQTKFINGGQIEQRTTVVGDSNKKGTRVQFWPDKKIFAQNKF 179

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++D +  RLRE  FL S ++I+L  +     ++   F+K GI+ FV ++++ K  L +  
Sbjct: 180 SFDMISERLRETCFLISELKITL--EDQITFQKEAFFFKNGIKDFVEFINQGKTLLNKQA 237

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             I  +++ I++++A ++ D Y ++++ F NNI  K GGTH  GL+ AL R    + ++ 
Sbjct: 238 ALINETQEKINVEIAFQYTDSYSDSIISFVNNIKTKSGGTHELGLKQALVRVFNDFAQQK 297

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              K    ++   D +EG T VLS+K+P+    F  QTK+KL +   +SVVE      + 
Sbjct: 298 SIFKNKTHTLDILDIKEGLTLVLSLKVPEFLLEFVGQTKDKLGTQIAKSVVEDICYKQVL 357

Query: 366 AWLEEHPLEAKIIVKKVLDA--SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            WL ++  EA  I+ K+ DA    +     +      +    +   L GKLA    ++  
Sbjct: 358 LWLNKNQQEANKIINKIKDAFDQRMSTKLSKIESKKSKDASKEKKILSGKLAPAQSKNKA 417

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + ELF+VEG+SAGGSAK GR R+ QAILPL+GKI+N E+ R   +L + EI  +I++LGT
Sbjct: 418 EKELFIVEGESAGGSAKLGRDRKFQAILPLKGKIINAEKTRLIDLLKNNEIVAIISSLGT 477

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG   F+IN L Y KIIIMTDAD DGAHI+ LLLTF FR M  LI  G +YI +PPLY 
Sbjct: 478 GIG-QDFNINNLEYDKIIIMTDADTDGAHIQILLLTFIFRYMKELIEKGHVYIAQPPLYK 536

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI--DDALKIDKLI 601
           I+           E+    +I    + +++ +     + ++      +  +    I   I
Sbjct: 537 ISFKNKEAVYAWNENELKQIIENKSNFDLQRYKGLGEMNAQQLWDTTMNPEKRTLIKVKI 596

Query: 602 KDFYPNHDKTF 612
           +D      + F
Sbjct: 597 EDLAIAERRIF 607



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 1/73 (1%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L  I    +    +QRYKGLGEMNA QLW+TT+NP+ R+L++VKI D + A+     LMG
Sbjct: 553 LKQIIEN-KSNFDLQRYKGLGEMNAQQLWDTTMNPEKRTLIKVKIEDLAIAERRIFTLMG 611

Query: 783 DEVEPRREFIQEN 795
           D+++ R+++I+ N
Sbjct: 612 DKIDIRKQWIKNN 624


>gi|106734231|gb|ABF82592.1| DNA topoisomerase IV subunit beta [Exiguobacterium oxidotolerans]
          Length = 489

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 256/492 (52%), Positives = 347/492 (70%), Gaps = 4/492 (0%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIG T    GLHH+++E++DN+IDE+L GY D I VT+    S  V DNGRGIP 
Sbjct: 1   KRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPI 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ +KR   +
Sbjct: 60  DIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204
           Y  S+  G+    L + G    +TGT + F P S+IF    +++YD L  RLREL+FLN 
Sbjct: 120 YYQSYHRGVPTQDLEIIG-TSEETGTMIRFFPDSEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            + I + D R+ EP      Y+GGI+++V +L+R K+ +   P+ + G++D I +++A++
Sbjct: 179 GLNIVITDDRAEEPITRHFHYEGGIKSYVEHLNRSKEVVHPEPVYVHGTKDGIEVEVALQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +NDG+  N+  FTNNIP  +GGTH +G ++ALTR I  Y +K    K+   ++ G+D RE
Sbjct: 239 YNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGEDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+++SIK P+P+F  QTK KL +S+ R+  ++  +     ++ E+P  A+ IV+K + 
Sbjct: 299 GMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSIFEQFMMENPTNARAIVEKGMM 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R AA+RAR+LTRRKGVL+++SLPGKLADCS RD   SE+++VEGDSAGGSAK GR 
Sbjct: 359 ASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRD 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R  QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMT
Sbjct: 419 RHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMT 477

Query: 505 DADVDGAHIRTL 516
           DADVDGAHIRTL
Sbjct: 478 DADVDGAHIRTL 489


>gi|238793656|ref|ZP_04637279.1| DNA topoisomerase 4 subunit B [Yersinia intermedia ATCC 29909]
 gi|238727071|gb|EEQ18602.1| DNA topoisomerase 4 subunit B [Yersinia intermedia ATCC 29909]
          Length = 631

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/636 (35%), Positives = 330/636 (51%), Gaps = 17/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V+D+GRG+P D+H EEG+ A E+IM RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVTDDGRGMPVDIHPEEGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTEQRWCYADGLTDYLMEAVNGLITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +       G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 VPFVGSFAGDTEAIDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRDF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNIQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DEE     L               KG+   N L+        +D   + 
Sbjct: 530 IDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQ---LRETTLDPNTRR 586

Query: 604 F--YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                  D    +   +  +   +   E   +   +
Sbjct: 587 LVQLTIGDDDIDKTLAMMDMLLAKKRSEDRRNWLQE 622



 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNIQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  +   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTIGDDDIDKTLAMMDMLLAKKRSEDRRNWLQE 622


>gi|319404202|emb|CBI77795.1| topoisomerase protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 692

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/651 (36%), Positives = 351/651 (53%), Gaps = 21/651 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++I+   Y+A SI++L+GL+ V+ RP MYIG TD    LHH+  E++DNA+DE++ GYAD
Sbjct: 46  NDIKKDEYNALSIRVLEGLEPVRLRPGMYIGGTDS-KALHHLFSEIIDNAMDEAVAGYAD 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           +I V+L+  G  TV+DNGRGIP + H +    S  EVIMT+LH+G KF+ K+Y+ SGGLH
Sbjct: 105 LIDVSLDEQGYLTVTDNGRGIPVENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLH 164

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  +++ + R+  +Y   F  GI  + L   G   N  GT V F P S I
Sbjct: 165 GVGISVVNALSDDMEVEVARDRKLYRQRFSRGIPQSGLENLGDVYNRRGTRVRFHPDSKI 224

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------MFYKGGIEAFVS 234
           F     F  + +       ++L   V+I                      +  G++ ++ 
Sbjct: 225 FGEKVAFEPEKIYKMALSKAYLFGGVKIRWNCDSKMLEGIKNIPEKAVFHFPDGLKDYLL 284

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
              +++  +       +  +   + S++ A+ W  G    V  + N IP  +GGTH +GL
Sbjct: 285 SSLKNEYRVTSKVFSGKTKQHGAHGSVEWAIAWYGG-DACVHSYCNTIPTGEGGTHEAGL 343

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R AL R + +Y E     +     +  DD      ++LS+ + +P F  QTK++L + E 
Sbjct: 344 RQALLRSLKAYAELIGNKRSA--IITSDDVMISAIAILSVFIREPEFVGQTKDRLATIEA 401

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE+ + D    WL   P EA  ++  +++ +  R   R+ ++   RK  +    LPG
Sbjct: 402 QRIVENAIRDPFDHWLANSPQEATKLLDWIIERAEERVKRRQDKE-INRKTAVRKLRLPG 460

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +KM +SQ
Sbjct: 461 KLADCSQNSAVGAELFIVEGDSAGGSAKQARNRVNQAILPLRGKILNVASAAREKMSASQ 520

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I  LI ALG GI +  +  + LRY +IIIMTDADVDGAHI +LL+TFFF++MP LI  G
Sbjct: 521 AINDLILALGCGI-RSKYREDDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIRQG 579

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNF 590
            LY+  PPLY I++G  + Y +D+   ++ L  +   +           G +    L+  
Sbjct: 580 HLYLAVPPLYRISQGGKVAYARDDNHKDELLKTEFTGKAKIEIGRFKGLGEMRAEQLKET 639

Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                    +   I        K  +E  + +         + N + A  L
Sbjct: 640 TMDPKKRTLLRIAIDAVDMQETKNTVESLMGTKPEARFRFIQENSTFADNL 690



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 108/332 (32%), Gaps = 37/332 (11%)

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLY------IIKPPLYGITRGKSLQYVKDEESL 559
           A +    +    +      +      G           +  +    R     ++ +    
Sbjct: 364 AIITSDDVMISAIAILSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLANSPQE 423

Query: 560 EDYLINQSLSEEIELFC-------DSKGVISKNDLRNFIDDALKIDKLIKDF-------- 604
              L++  +    E          + K  + K  L   + D  +   +  +         
Sbjct: 424 ATKLLDWIIERAEERVKRRQDKEINRKTAVRKLRLPGKLADCSQNSAVGAELFIVEGDSA 483

Query: 605 --YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                  +  + QA++       +         S      + I               D+
Sbjct: 484 GGSAKQARNRVNQAILPLRGKILNVASAAREKMSASQAINDLILALG-CGIRSKYREDDL 542

Query: 663 LVKRIARGVQEQFVLEGSSIFS-----FGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
             +RI   +     ++G+ I S     F  +   +         +  L  I  G K+   
Sbjct: 543 RYERII--IMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAYA 600

Query: 718 GPCSLLDTIFSI---GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQ 772
              +  D +      G+  I + R+KGLGEM A QL ETT++P  R+LLR+ I   D  +
Sbjct: 601 RDDNHKDELLKTEFTGKAKIEIGRFKGLGEMRAEQLKETTMDPKKRTLLRIAIDAVDMQE 660

Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             +    LMG + E R  FIQENS  +  LDI
Sbjct: 661 TKNTVESLMGTKPEARFRFIQENSTFADNLDI 692


>gi|163868608|ref|YP_001609817.1| DNA topoisomerase IV subunit B [Bartonella tribocorum CIP 105476]
 gi|161018264|emb|CAK01822.1| topoisomerase protein [Bartonella tribocorum CIP 105476]
          Length = 688

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 246/652 (37%), Positives = 356/652 (54%), Gaps = 21/652 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + N Q   Y+A SI++L+GL+ V+ RP MYIG TD    LHH+  E++DNA+DE++ GYA
Sbjct: 41  AKNTQEDDYNALSIRVLEGLEPVRLRPGMYIGGTDS-KALHHLFAEIIDNAMDEAVAGYA 99

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           D I V+L+ +G  TV+DNGRGIP + H +    S  EVIMT+LH+GGKF+ K+Y+ +GGL
Sbjct: 100 DSIEVSLDRNGYITVTDNGRGIPVENHPQMPDKSTLEVIMTQLHSGGKFDGKAYQTAGGL 159

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  +++ + RE  +Y   F  GI  + L   G   N  GT V F P S+
Sbjct: 160 HGVGISVVNALSDDMEVEVARERKLYRQRFSRGIPQSGLENLGDVYNRRGTRVRFHPDSE 219

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFV 233
           IF     FN + +       ++L   V+I               P +    +  G++ ++
Sbjct: 220 IFGEKAAFNPEKIYKMACSKAYLFGGVKIRWSCDPVILESVKNIPEKAVFHFPNGLKDYL 279

Query: 234 SYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
               + +  +       +  ++  + S++ A+ W+ G    V  + N IP  +GGTH  G
Sbjct: 280 LASLKDEYRVTSEIFSGKTQQNNGHGSVEWAIAWHGG-DPCVQSYCNTIPTGEGGTHEIG 338

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR AL R + SY E     +     +  DD      ++LS+ + +P F  QTK++L + E
Sbjct: 339 LRQALLRGLKSYAELIGNKRAA--IITSDDIMISTAAILSVFISNPEFVGQTKDRLATIE 396

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            + +VE+ + D    WL   P EA  ++  V++ +  R   R+ R+   RK  +    LP
Sbjct: 397 AQRIVENAIRDPFDHWLANSPQEATKLLDWVIERAEERVRRRQDRE-ISRKTAVRKLRLP 455

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +KM SS
Sbjct: 456 GKLADCSQNHAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAAHEKMNSS 515

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           Q I  LI ALG G  +  +    LRY +IIIMTDADVDGAHI +LL+TFFF++MP LIH 
Sbjct: 516 QTISDLILALGCGT-RSKYREKDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIHQ 574

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           G LY+  PPLY I++G  + Y +D+   ++ L  +   +           G +    L+ 
Sbjct: 575 GHLYLAVPPLYRISQGGKVAYARDDIHKDELLKTEFTGKAKIEIGRFKGLGEMRAEQLKE 634

Query: 590 FIDDALK---IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                 K   +   I        K  +E  + +         + N + AS L
Sbjct: 635 TTMHPQKRTLLRVSIDAVEMQETKKTVESLMGTKPEARFRFIQENSTFASNL 686



 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 5/78 (6%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS---QADDLFSRLMGDEVE 786
           G+  I + R+KGLGEM A QL ETT++P  R+LLRV I DA    +       LMG + E
Sbjct: 612 GKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSI-DAVEMQETKKTVESLMGTKPE 670

Query: 787 PRREFIQENSLPS-ALDI 803
            R  FIQENS  +  LDI
Sbjct: 671 ARFRFIQENSTFASNLDI 688


>gi|319898877|ref|YP_004158970.1| topoisomerase protein [Bartonella clarridgeiae 73]
 gi|319402841|emb|CBI76392.1| topoisomerase protein [Bartonella clarridgeiae 73]
          Length = 692

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 243/651 (37%), Positives = 353/651 (54%), Gaps = 21/651 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +N +   Y A SI++L+GL+ V+ RP MYIG TD    LHH+  E++DNA+DE++ GYAD
Sbjct: 46  NNTEEDEYSALSIRVLEGLEPVRLRPGMYIGGTDS-KALHHLFSEIIDNAMDEAVAGYAD 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           +I V+L+  G  TV+DNGRGIP + H +    S  EVIMT+LH+G KF+ K+Y+ SGGLH
Sbjct: 105 LIDVSLDRQGYLTVTDNGRGIPVENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLH 164

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  +++ + RE  +Y   F  GI  + L   G   N  GT V F P S I
Sbjct: 165 GVGISVVNALSDDMEVEVARERKLYRQRFSRGIPQSGLENLGDVYNRRGTRVRFHPDSKI 224

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMFYKGGIEAFVS 234
           F     F    +    R  ++L   V+I               P +    +  G++ ++ 
Sbjct: 225 FGEKVAFEPGQIYKMARSKAYLFGGVKIRWNCDPIMLEGIKAIPEKAVFHFPDGLKDYLL 284

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
              +++  +       +  R   + S++ A+ W  G +  V  + N IP  +GGTH +GL
Sbjct: 285 SSLKNEYRVTSEVFSGKTKRHGDHGSVEWAIAWYGG-NACVQSYCNTIPTGEGGTHEAGL 343

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R AL R + +Y E     +     +  DD      ++LS+ + +P F  QTK++L + E 
Sbjct: 344 RQALLRGLKAYAELIGNKRSA--IITSDDVMISAIAILSVFIREPEFVGQTKDRLATIEA 401

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE+ + D    WL   P EA  ++  V++ +  R   R+ R+   RK V+    LPG
Sbjct: 402 QRIVENAIRDPFDHWLANSPQEATKLLDWVIERAEERVKRRQDRE-INRKTVVRKLRLPG 460

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +KM SSQ
Sbjct: 461 KLADCSQNSAAGAELFIVEGDSAGGSAKQARNRVNQAILPLRGKILNVASAAREKMSSSQ 520

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I  LI ALG G  +  +  + LRY +IIIMTDADVDGAHI +LL+TFFF++MP LI  G
Sbjct: 521 TISDLILALGCGT-RSKYREDDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIRQG 579

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNF 590
            LY+  PPLY I++G  + Y +D+   ++ L  +   +           G +    L+  
Sbjct: 580 HLYLAVPPLYRISQGGKVAYARDDIHKDELLKTEFTEKAKIEIGRFKGLGEMRAEQLKET 639

Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                    +  +I        K  +E  + +         + N + A  L
Sbjct: 640 TMHPQKRTLLRIVIDSVDMQETKNTVENLMGTKPEARFRFIQENSTFADNL 690



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 116/335 (34%), Gaps = 43/335 (12%)

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLY------IIKPPLYGITRGKSLQYVKDEESL 559
           A +    +    +      +      G           +  +    R     ++ +    
Sbjct: 364 AIITSDDVMISAIAILSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLANSPQE 423

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616
              L++  +    E     K    +   R  +   L++   + D   N     + FI + 
Sbjct: 424 ATKLLDWVIERAEERV---KRRQDREINRKTVVRKLRLPGKLADCSQNSAAGAELFIVEG 480

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEK----------------SWHGSINNS 660
             +G    ++   +N ++       LN  +   EK                         
Sbjct: 481 DSAGGSAKQARNRVNQAILPLRGKILNVASAAREKMSSSQTISDLILALGCGTRSKYRED 540

Query: 661 DILVKRIARGVQEQFVLEGSSIFS-----FGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
           D+  +RI   +     ++G+ I S     F  +   +         +  L  I  G K+ 
Sbjct: 541 DLRYERII--IMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVA 598

Query: 716 IT----GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--D 769
                     LL T F+  +  I + R+KGLGEM A QL ETT++P  R+LLR+ I   D
Sbjct: 599 YARDDIHKDELLKTEFTE-KAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRIVIDSVD 657

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             +  +    LMG + E R  FIQENS  +  LDI
Sbjct: 658 MQETKNTVENLMGTKPEARFRFIQENSTFADNLDI 692


>gi|19909597|dbj|BAB86994.1| DNA gyrase subunit B [Halomonas cupida]
          Length = 454

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 271/457 (59%), Positives = 343/457 (75%), Gaps = 3/457 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHHM++E++DN+IDE+L G+   I V ++ D S TVSDNGRGIPTD+H+EEG+SAAEVI
Sbjct: 1   GLHHMVFELVDNSIDEALAGHCTEIRVIIHPDESVTVSDNGRGIPTDIHEEEGVSAAEVI 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I R G ++E  + +G+   PL
Sbjct: 61  MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELKLTIWRAGLVHEQIYRHGVPQAPL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G     TG+ V F PS + F+  +F++D L  RLRELSFLNS V I L+D+RS +  
Sbjct: 121 GVVGQTE-KTGSRVHFRPSPETFANIEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GG++AFV +L+ +K  L           D +++++AM+WND + EN+ C+TNN
Sbjct: 179 -ELFHYEGGLKAFVDHLNTNKTVLNPVFHFNAEREDGVAVEVAMQWNDTFAENIFCYTNN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+G R+ALTR +  Y+E     KK K +  GDD REG T+++S+K+PDP+F
Sbjct: 238 IPQRDGGTHLAGFRAALTRTLNHYIEAEGLLKKAKVATSGDDAREGLTAIISVKVPDPKF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEV++ VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+T
Sbjct: 298 SSQTKDKLVSSEVKTAVEQELGRLFSEYLVEKPNEAKAIVNKMLDAARAREAARKARDMT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILN
Sbjct: 358 RRKGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           VE+ARFDKMLSS E+GTLITALG GIG++ F+  KLR
Sbjct: 418 VEKARFDKMLSSAEVGTLITALGCGIGREEFNPEKLR 454


>gi|238750922|ref|ZP_04612419.1| DNA topoisomerase 4 subunit B [Yersinia rohdei ATCC 43380]
 gi|238710836|gb|EEQ03057.1| DNA topoisomerase 4 subunit B [Yersinia rohdei ATCC 43380]
          Length = 631

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 233/637 (36%), Positives = 336/637 (52%), Gaps = 19/637 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ KSY+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKSYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +        G+  ++         L
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIIFKDKVNNTEQRWCY--ADGLTDYLMEAVNGWVTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  +ID A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEDPFVGSFAGDTEAIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRD 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 SMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY
Sbjct: 469 IGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L               KG+   N L+        +D   +
Sbjct: 529 RIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQ---LRETTLDPNTR 585

Query: 603 DF--YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                   D    +   +  +   +   E   +   +
Sbjct: 586 RLVQLTIGDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  +   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTIGDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622


>gi|73810192|gb|AAZ86069.1| DNA gyrase subunit B [Burkholderia stabilis]
          Length = 632

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 278/636 (43%), Positives = 392/636 (61%), Gaps = 20/636 (3%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169
           GVGVS VNALSSWL+L ++R G    M F  GI              +P++VTG    + 
Sbjct: 1   GVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTE-NR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG+
Sbjct: 60  GTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL
Sbjct: 118 KGFVEYINKTKTNLHPTIFFATGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVS
Sbjct: 178 TGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   
Sbjct: 238 SEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+L
Sbjct: 298 LPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I
Sbjct: 358 SSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMI 417

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  VIS + L  
Sbjct: 418 ERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAVISGDALGE 477

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
                L    +I      +D   +E  +     +  S++    + A  L   L+  A K+
Sbjct: 478 LARSYLLSRSVIDRLSRLYDPAALEAIMDGVAIDL-SNEASTEASAKALHAALHDEALKN 536

Query: 650 EKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
           E      +        + V+R   G     V++     +   +     +N          
Sbjct: 537 EVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVATANTFTGLIGEGA 596

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
            +      + ++   S +  + +   + +S QRYKG
Sbjct: 597 VIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKG 632


>gi|227112782|ref|ZP_03826438.1| DNA topoisomerase IV subunit B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 631

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/650 (36%), Positives = 347/650 (53%), Gaps = 22/650 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MAQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ +KR+G +Y+++F NG     L VTG+ G  +TGT V F P    F 
Sbjct: 117 ISVVNALSTRVEVTVKRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPDEKFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +      + G+  ++         L
Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTEQRWCY--QDGLNDYLCEAVNGLITL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFLGSITGDTEAVDWALLWLPEGGELLTESYVNLIPTPMGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM +P+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNILPRG-VKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY
Sbjct: 469 IGIDPDSADLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L      +        KG+   N L+         +  + 
Sbjct: 529 RIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLR-------ETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                  +  I +  +        D  +    +    N L    +K+E  
Sbjct: 582 PNTRRLVQLTINEDDVDQTM-AMMDMLLAKKRSEDRRNWLQEKGDKAEIE 630



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++ +    ++       LN             +++ ++L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQAREREFQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+  
Sbjct: 458 ASQEVHDISVAIGIDPDSADLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQG 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTINEDDVDQTMAMMDMLLAKKRSEDRRNWLQE 622


>gi|296118608|ref|ZP_06837186.1| DNA gyrase, B subunit [Corynebacterium ammoniagenes DSM 20306]
 gi|295968507|gb|EFG81754.1| DNA gyrase, B subunit [Corynebacterium ammoniagenes DSM 20306]
          Length = 666

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 260/669 (38%), Positives = 368/669 (55%), Gaps = 58/669 (8%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T G  GLHH+I+EV+DN++DE++ G+A  + V L  DG   V+D+GRGIP  +H 
Sbjct: 1   MYIGST-GPRGLHHLIWEVVDNSVDEAMAGHASKVIVRLMEDGGVEVTDDGRGIPVGMHA 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
             G    +V+MT+LHAGGKF+  SY +SGGLHGVG+SVVNALS+ ++  IK +G  +   
Sbjct: 60  S-GAPTVQVVMTQLHAGGKFDSDSYAISGGLHGVGISVVNALSTRVEAEIKTDGKHWYQV 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F N I    L   G+A   +GT++ F    +IF   +++YDT+  RL+E++FLN  + I 
Sbjct: 119 FNNSIP-EELQEGGNA-RGSGTKIRFWADPEIFESVEYDYDTIARRLQEMAFLNKGLTIQ 176

Query: 210 LIDKRSPEPR-------------------------------------------------- 219
           LID+R  + +                                                  
Sbjct: 177 LIDERVTKEQLDLEAIADAESGEKQLDETSFDDEEVDDFVEEGAVTPAPVETSGSSKKKL 236

Query: 220 --EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
             ++T  Y  G+  +V +L++ K  +  + +      +   +++AM+WN GY E+   F 
Sbjct: 237 QKKVTYHYPDGLIDYVKFLNKTKSAIHPTVVAFDVKGNEHEVEVAMQWNQGYKESTHTFA 296

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G RSALT  +  Y ++    ++   S+ GDDCREG  +V+S+K+ DP
Sbjct: 297 NTINTYEGGTHEEGFRSALTSLMNRYAKEHKLMREKDGSLTGDDCREGLAAVVSLKVADP 356

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL +SE++  V+  VN+ L+ W + +P EAK IV K + +S  R AAR+AR+
Sbjct: 357 QFEGQTKTKLGNSEIKGFVQRAVNEHLNDWFDANPAEAKAIVNKAVASSQARVAARKARE 416

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           L RRK   D+  LPGKLADC  +DPK SEL++VEGDSAGGSAK GR    QAILPLRGKI
Sbjct: 417 LVRRKSATDLGGLPGKLADCRTKDPKISELYIVEGDSAGGSAKGGRDSMFQAILPLRGKI 476

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVE+AR DK+L + E+  +ITALGTGI ++ FDI KLRY+KI++M DADVDG HI TLL
Sbjct: 477 LNVEKARMDKVLKNAEVQAIITALGTGIHEE-FDITKLRYNKIVLMADADVDGQHIATLL 535

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFC 576
           LT  FR MP L+  G +Y+  PPLY +  GK    Y   +   ++ L     +       
Sbjct: 536 LTLLFRFMPQLVEEGHVYLANPPLYKLKWGKGKPGYAYSDAERDELLEEGLNAGRKINKD 595

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           D           N  +                D    ++A          D     S  +
Sbjct: 596 DGIQRYKGLGEMNASELWETTLDPSNRILRRVDLEDAQRADELFSILMGDDVAARRSFIT 655

Query: 637 KLANRLNFI 645
           + A  + F+
Sbjct: 656 RRAKDVRFL 664



 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/88 (54%), Positives = 59/88 (67%), Gaps = 6/88 (6%)

Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
            LL+   + GRK I+    +QRYKGLGEMNAS+LWETTL+P  R L RV + DA +AD+L
Sbjct: 580 ELLEEGLNAGRK-INKDDGIQRYKGLGEMNASELWETTLDPSNRILRRVDLEDAQRADEL 638

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMGD+V  RR FI   +     LDI
Sbjct: 639 FSILMGDDVAARRSFITRRAKDVRFLDI 666


>gi|253686724|ref|YP_003015914.1| DNA topoisomerase IV, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753302|gb|ACT11378.1| DNA topoisomerase IV, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 631

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/650 (36%), Positives = 349/650 (53%), Gaps = 22/650 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MAQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ +KR+G +Y+++F NG     L VTG+ G  +TGT V F P    F 
Sbjct: 117 ISVVNALSTRVEVTVKRDGQVYDIAFANGDKVQDLTVTGTCGRRNTGTRVHFWPDEKFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +      + G+  ++         L
Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTEQRWCY--QDGLNDYLCEAVNGLITL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  ++D A +   +G    +  + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFLGSITGDTEAVDWALLWLPEGGELLMESYVNLIPTPMGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM +P+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNILPRG-VKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY
Sbjct: 469 IGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L      +        KG+   N L+         +  + 
Sbjct: 529 RIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLR-------ETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                  +  I++  I        D  +    +    N L    +K+E  
Sbjct: 582 PNTRRLVQLTIKEDDIDQTM-AMMDMLLAKKRSEDRRNWLQEKGDKAEIE 630



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++ +    ++       LN             +++ ++L
Sbjct: 410 LSR--TELFLVEGDSAGGSAKQAREREFQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+  
Sbjct: 458 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQG 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTIKEDDIDQTMAMMDMLLAKKRSEDRRNWLQE 622


>gi|240850782|ref|YP_002972182.1| DNA topoisomerase IV subunit B [Bartonella grahamii as4aup]
 gi|240267905|gb|ACS51493.1| DNA topoisomerase IV subunit B [Bartonella grahamii as4aup]
          Length = 688

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 242/652 (37%), Positives = 353/652 (54%), Gaps = 21/652 (3%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + + Q   Y+A SI++L+GL+ V+ RP MYIG TD    LHH+  E++DNA+DE++ GYA
Sbjct: 41  AKDTQEDDYNALSIRVLEGLEPVRLRPGMYIGGTDS-KALHHLFAEIIDNAMDEAVAGYA 99

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           D I V+L+ +G  TV+DNGRGIP + H +    S  EVIMT+LH+GGKF+ K+Y+ +GGL
Sbjct: 100 DFIEVSLDRNGYITVTDNGRGIPVENHPQMPEKSTLEVIMTQLHSGGKFDGKAYQTAGGL 159

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  +++ + RE  +Y   F  GI  + L   G   N  GT V F P  +
Sbjct: 160 HGVGISVVNALSDDMEVEVARERKLYRQRFSRGIPQSGLEDLGDVYNRRGTRVRFHPDRE 219

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFV 233
           IF     F  + +       ++L   V+I               P +    +  G++ ++
Sbjct: 220 IFGEKAAFEPEKIYKMACSKAYLFGGVKIRWTCDPVILEGAKNIPEKAVFHFPNGLKDYL 279

Query: 234 SYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
               + +  +       +  ++  + S++ A+ W+ G    V  + N IP  +GGTH  G
Sbjct: 280 LSSLKDEYRVTSEIFSGKTQQNNGHGSVEWAIAWHGG-DSCVQSYCNTIPTGEGGTHEIG 338

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR AL R + SY E     +     +  DD      ++LS+ + +P F  QTK++L + E
Sbjct: 339 LRQALLRGLKSYAELIGNKRA--TIITSDDIMISTAAILSVFISNPEFVGQTKDRLATIE 396

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            + +VE+ + D    WL   P EA  ++  V++ +  R   R+ R+   RK  +    LP
Sbjct: 397 AQRIVENAIRDPFDHWLANSPQEATKLLDWVIERAEERVKRRQDRE-ISRKTAVRKLRLP 455

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +KM SS
Sbjct: 456 GKLADCSQNHAVGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAAHEKMNSS 515

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           Q I  LI ALG G  +  +    LRY +IIIMTDADVDGAHI +LL+TFFF++MP LIH 
Sbjct: 516 QTISDLILALGCGT-RSKYREKDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIHQ 574

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589
           G LY+  PPLY I++G  + Y +D+   ++ L  +   +           G +    L+ 
Sbjct: 575 GHLYLAVPPLYRISQGGKVAYARDDIHKDELLKTEFTGKAKVEIGRFKGLGEMRAEQLKE 634

Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                     +   I        K  +E  + +         + N + AS L
Sbjct: 635 TTMHPQKRTLLRVSIDAVEMQETKKTVESLMGTKPEARFRFIQENSTFASNL 686



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 5/78 (6%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS---QADDLFSRLMGDEVE 786
           G+  + + R+KGLGEM A QL ETT++P  R+LLRV I DA    +       LMG + E
Sbjct: 612 GKAKVEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSI-DAVEMQETKKTVESLMGTKPE 670

Query: 787 PRREFIQENSLPS-ALDI 803
            R  FIQENS  +  LDI
Sbjct: 671 ARFRFIQENSTFASNLDI 688


>gi|329667368|gb|AEB93316.1| topoisomerase IV subunit B [Lactobacillus johnsonii DPC 6026]
          Length = 622

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 253/571 (44%), Positives = 352/571 (61%), Gaps = 13/571 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG TD   GL+H+IYE++DN++DE++ GY   I VT++ D S TV D GRG+PT +H 
Sbjct: 1   MYIGSTDRH-GLNHLIYEIVDNSVDEAMAGYGKEINVTIHKDNSVTVQDFGRGMPTGMH- 58

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E GI   EVI+T LHAGGKF +K+Y+ SGGLHGVG SVVNALSS+LK+R+ R+G  YE  
Sbjct: 59  ESGIPTIEVILTVLHAGGKFTEKNYQTSGGLHGVGSSVVNALSSYLKVRVVRDGQAYEEE 118

Query: 150 FIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F N G     L   G   +  GT +TF P   IFS   +NY+T+Q R+RE +FL   V+ 
Sbjct: 119 FENGGHPIGTLKHLGKTKDKNGTTITFKPDPTIFSTTTYNYETIQERIRESAFLLKGVKF 178

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
           +L D+R PE  +    Y+ GI++FVSYL+   K  M       G ++ I ++ + ++NDG
Sbjct: 179 TLTDEREPEHHDE-FLYEDGIKSFVSYLNED-KDTMGDVFYFSGKQNGIEVEFSGQYNDG 236

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y EN + F NN+   DGG+H +G RS  T+    Y +K    K   + + G D REG ++
Sbjct: 237 YSENFVSFVNNVRTADGGSHEAGARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSA 296

Query: 329 VLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           VLS+K+P+    F  QTK KL + + RSVV+S V + LS +L E+   A+ +V+K   A 
Sbjct: 297 VLSVKIPEELLEFEGQTKGKLGTPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKAR 356

Query: 387 MVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
             R+AA++ARD +R  K       L GKL     R+PKK+ELFLVEGDSAGGSAKQGR R
Sbjct: 357 DAREAAKKARDESRSGKKRRKKEILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDR 416

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           + QAILPLRGK+LN ++A+   +  ++EI T+I  +G G+G D F I    Y KIIIMTD
Sbjct: 417 KFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHTIGAGVGSD-FQIKDANYDKIIIMTD 475

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK----SLQYVKDEESLED 561
           AD DGAHI+ LLLTFF+R M  ++  G +YI  PPLY + +G      ++Y   +E L +
Sbjct: 476 ADTDGAHIQILLLTFFYRYMRPMVEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSE 535

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFID 592
              +      ++ F     + +       ++
Sbjct: 536 DSKDMGKGFALQRFKGLGEMNADQLWETTMN 566



 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%)

Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           + +    +   KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA  A+   + L
Sbjct: 531 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 590

Query: 781 MGDEVEPRREFIQEN 795
           MGD+V PRR++I EN
Sbjct: 591 MGDKVAPRRKWIDEN 605


>gi|238782858|ref|ZP_04626887.1| DNA topoisomerase 4 subunit B [Yersinia bercovieri ATCC 43970]
 gi|238716281|gb|EEQ08264.1| DNA topoisomerase 4 subunit B [Yersinia bercovieri ATCC 43970]
          Length = 631

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/585 (38%), Positives = 317/585 (54%), Gaps = 12/585 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDGQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D  +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDLVNNTEQRWCYADGLTDYLMEAVDGLITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 APFVGSFAGDTEAIDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRDF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  GK + Y  DEE     L               KG+   N L+
Sbjct: 530 IDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQ 574



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 87/254 (34%), Gaps = 43/254 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVK 766
           TTL+P+TR L+++ 
Sbjct: 578 TTLDPNTRRLVQLT 591


>gi|146313079|ref|YP_001178153.1| DNA topoisomerase IV subunit B [Enterobacter sp. 638]
 gi|145319955|gb|ABP62102.1| DNA topoisomerase IV subunit B [Enterobacter sp. 638]
          Length = 630

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 219/643 (34%), Positives = 333/643 (51%), Gaps = 17/643 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRIDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G ++ ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVHNIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   + H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVTRMTHILKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FLGNFSGDTEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNIQTAEMLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREFQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ NG +++  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVHVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y   EE     L      +        KG+   N L+        +D   +   
Sbjct: 531 LGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQ---LRETTLDPNTRRLV 587

Query: 606 PNHDKTFIEQ--AVISGVFNCESDQEINVSLASKLANRLNFIA 646
                   EQ    +  +   +   E   +   +  +  +  A
Sbjct: 588 QLIISDEDEQQTNAMMDMLLAKKRSEDRRNWLQEKGDMADIEA 630



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 99/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNIQTAEMLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREFQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKN 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVHVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q + +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLIISDEDEQQTNAMMDMLLAKKRSEDRRNWLQE 621


>gi|307129110|ref|YP_003881126.1| Topoisomerase IV subunit B [Dickeya dadantii 3937]
 gi|306526639|gb|ADM96569.1| Topoisomerase IV subunit B [Dickeya dadantii 3937]
          Length = 631

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/648 (35%), Positives = 347/648 (53%), Gaps = 22/648 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHPDQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ ++R+G +Y+++F NG     L VTG+ G  +TGT V F P +  F 
Sbjct: 117 ISVVNALSTRVEVTVRRDGQVYDIAFENGDKVQDLTVTGTCGRRNTGTRVHFWPDASFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+  +L H L+  + L   V+I   D  +   +      +GG+  ++         L
Sbjct: 177 SPRFSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTEQRWCY--QGGLSDYLCEAVNGLPTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P       D  +++ A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFIGTIPGDTEAVEWALLWLPEGGELLTESYVNLIPTLQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNILPRG-VKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 SKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R   +L+  G +++  PPLY
Sbjct: 469 IGIDPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVQGGHVHVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L       E       K  + +      ++     +  + 
Sbjct: 529 RIDLGKEVYYALDEEEKAGIL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  +  I +  I        D  +    A    N L    +K+E
Sbjct: 582 PNTRRLVQLTINEQDIEQTL-ATMDMLLAKKRAEDRRNWLQEKGDKAE 628



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 102/294 (34%), Gaps = 46/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LSK--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKR--IFSNRIEENYL-----------TILSLICN 710
             +    +     ++  S      +Y +  I ++   +                 +L+  
Sbjct: 458 ASQEVHDISVAIGIDPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVQG 517

Query: 711 GDK-------IKITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + GI           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVHVAMPPLYRIDLGKEVYYALDEEEKAGILEQLKRKKGKPNVQRFKGLGEMNPMQLRE 577

Query: 753 TTLNPDTRSLLRVKIT--DASQADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I   D  Q       L+  +  E RR ++QE    + LD+
Sbjct: 578 TTLDPNTRRLVQLTINEQDIEQTLATMDMLLAKKRAEDRRNWLQEKGDKAELDV 631


>gi|56551307|ref|YP_162146.1| DNA topoisomerase IV subunit B [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56542881|gb|AAV89035.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 660

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 235/632 (37%), Positives = 340/632 (53%), Gaps = 29/632 (4%)

Query: 1   MSDNIQNS-------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53
           MSD++  S       +Y+ADSI++L+GL+ +++RP MYIG TD E   HH+  EVLDNA+
Sbjct: 1   MSDDLFKSTVTPSADNYNADSIEVLEGLEPIRRRPGMYIGGTD-ERAFHHLAAEVLDNAM 59

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQK 112
           DE++ G+A  I VTL+     T++DNGRGIP D H +    SA EVI+T LH+GGKF+ K
Sbjct: 60  DEAVAGHATRIEVTLDTGDRLTITDNGRGIPIDPHPKFPDKSALEVILTTLHSGGKFSNK 119

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +Y  SGGLHGVG+SVVNALSS   + + R   +Y  SF  G+    L   G+A N  GT 
Sbjct: 120 AYATSGGLHGVGISVVNALSSETTVEVARNRLLYRQSFSRGVPLGALEQVGNAPNRRGTS 179

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFY 225
           V+F+P ++IF     F    L   +R  ++L + V+I          +  PE   I    
Sbjct: 180 VSFIPDTEIFGKTLHFKPAKLYRMVRSKAYLFAGVEIIWRCAPELASEDVPEKAVIHF-- 237

Query: 226 KGGIEAFVSYLDRHKKPLMQSPI----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
            GG+  ++      +    +                S++ A+ W      + L + N I 
Sbjct: 238 PGGLADYLKEEVGKRDCATKEFFTGRQSFSDEEG--SVEWAVAWPLWSEGSSLYYCNTIL 295

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH  GLR AL R + ++ E     K    +   +D   G   VLS+ + +P+F S
Sbjct: 296 TPAGGTHEQGLRLALVRGLRAFGELVGLKKAKDIA--PEDVIVGADMVLSLFIREPQFQS 353

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK++L + +V  +VE  + D    +L +     + ++  +++    R   R  RD+ R+
Sbjct: 354 QTKDRLTNPQVAGLVEKAIRDHFDHFLTDDMDRGRALLGFIMERMDERLRRRAERDIKRK 413

Query: 402 K-GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
                    LPGKL DCS+     SELF+VEGDSAGGSAKQ R R+ QAILP+RGKILNV
Sbjct: 414 TVTAARKLRLPGKLTDCSQDAADNSELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNV 473

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             A   K+L++QEI  +  ALG G+ +D  D   LRY +IIIM+DADVDGAHI TLL+TF
Sbjct: 474 AAATNAKILANQEISDITQALGCGV-RDRCDPQALRYDRIIIMSDADVDGAHIATLLMTF 532

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL-FCDSK 579
           FFR+M  ++ NG +Y+ +PPLY +  G    Y +D+    +         ++E+      
Sbjct: 533 FFREMTEIVRNGHIYLAQPPLYRLKAGAKTLYARDDNHRVELEKTVFKGRKVEVARFKGL 592

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           G ++   LR    D      L      ++   
Sbjct: 593 GEMNPQQLRETTMDPKTRSLLRVTLPKDYQDR 624



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 13/114 (11%)

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756
           +        +L    D  ++     L  T+F  GRK + + R+KGLGEMN  QL ETT++
Sbjct: 553 LYRLKAGAKTLYARDDNHRV----ELEKTVFK-GRK-VEVARFKGLGEMNPQQLRETTMD 606

Query: 757 PDTRSLLRVK----ITDASQADDLFSRLMGDEVEPRREFIQENSL---PSALDI 803
           P TRSLLRV       D  +  DL  RLMG + E R  FIQ N+     +A+DI
Sbjct: 607 PKTRSLLRVTLPKDYQDRQEISDLVDRLMGRQPEHRFAFIQANAAQFDEAAMDI 660


>gi|238796970|ref|ZP_04640474.1| DNA topoisomerase 4 subunit B [Yersinia mollaretii ATCC 43969]
 gi|238719230|gb|EEQ11042.1| DNA topoisomerase 4 subunit B [Yersinia mollaretii ATCC 43969]
          Length = 631

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 231/637 (36%), Positives = 335/637 (52%), Gaps = 19/637 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDGQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D  +   +        G+  ++         L
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDLVNNTEQRWCY--ADGLTDYLMEAVDGLITL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +       + D  +ID A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKAFVGSFAGDTEAIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRD 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 SMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY
Sbjct: 469 IGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L               KG+   N L+        +D   +
Sbjct: 529 RIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQ---LRETTLDPNTR 585

Query: 603 DF--YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                   D    +   +  +   +   E   +   +
Sbjct: 586 RLVQLTIGDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  +   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTIGDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622


>gi|289209261|ref|YP_003461327.1| DNA topoisomerase IV subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288944892|gb|ADC72591.1| DNA topoisomerase IV, B subunit [Thioalkalivibrio sp. K90mix]
          Length = 628

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/553 (40%), Positives = 310/553 (56%), Gaps = 14/553 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A  I++L+GLD V+KRP MY   TD     +H+  EV+DN++DE++ G+A  I V L
Sbjct: 2   SYSASDIEVLEGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEAISGHAKRIDVIL 57

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + D S +VSD+GRG+P DLH  E     EVI++ LHAGGKF+ K+Y+ SGGLHGVGVSVV
Sbjct: 58  HKDDSVSVSDDGRGMPVDLHPRENRPGVEVILSTLHAGGKFSDKNYQFSGGLHGVGVSVV 117

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDF 187
           NALS  L+++IKR+G  Y M+F  G     L   G     +TGT + F P    F    F
Sbjct: 118 NALSKQLEVQIKRDGREYRMAFAGGYKTQDLEAVGDVGKRNTGTTLHFWPDPQYFDSAKF 177

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +   L+H LR  + L   + ++  D+ + E  E     + G+  ++       + + + P
Sbjct: 178 SVPRLKHILRAKAVLCPGLTVTFHDETTGEACEWCY--QAGLRDYLVEALDGLERVPEEP 235

Query: 248 IRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                S    + D A+ W  +G       + N IP   GGTH++GLR+ LT  +  + E 
Sbjct: 236 FMGSVSGATEAADWAVTWLPEGGEVVSESYVNLIPTTQGGTHVNGLRTGLTEAVREFCEF 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                +    +  +D  E   SVLS KM DP+F+ QTKE+L S +    V   V D  S 
Sbjct: 296 RSLLPRG-IKLAPEDVWERVASVLSFKMQDPQFAGQTKERLSSRQAAPFVSGVVKDAFSL 354

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           WL +HP + + I +  +  +       RA     RK V    +LPGKLADC+ +D +++E
Sbjct: 355 WLNQHPQQGERIAELAIQNAQ---KRSRAGRKVVRKKVTQGPTLPGKLADCASQDLERTE 411

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGGSAKQ R R+ QAI+PLRGKILN      D++L SQEI  +  ALG   G
Sbjct: 412 LFLVEGDSAGGSAKQARDRDFQAIMPLRGKILNSWEVDPDQVLGSQEIHDISVALGVDPG 471

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           Q    ++ LRY K+ I+ DAD DGAHI TLL   F +    L+  G +YI  PPLY +  
Sbjct: 472 QA--SLDGLRYGKVCILADADSDGAHIATLLCALFLKHFRPLVERGHVYIAMPPLYRVDV 529

Query: 547 GKSLQYVKDEESL 559
           GK   Y  D++  
Sbjct: 530 GKQTFYALDDDEK 542



 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 4/75 (5%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ I +   KG +S+ R+KGLGEMN  QL ETT+NPDTR L+++ +  A     L   L
Sbjct: 545 VLERIEAEKMKGKVSVTRFKGLGEMNPLQLRETTMNPDTRRLVQLTLDAADDTMQLLDML 604

Query: 781 MGDE--VEPRREFIQ 793
           +G +   E RR +++
Sbjct: 605 LGKKRASE-RRAWLE 618


>gi|227326913|ref|ZP_03830937.1| DNA topoisomerase IV subunit B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 631

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 235/650 (36%), Positives = 347/650 (53%), Gaps = 22/650 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MAQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ +KR+G +Y+++F NG     L VTG+ G  +TGT V F P    F 
Sbjct: 117 ISVVNALSTRVEVTVKRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPDEKFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +      + G+  ++         L
Sbjct: 177 SPRFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTEQRWCY--QDGLNDYLCEAVNGLITL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFLGSITGDTEAVDWALLWLPEGGELLTESYVNLIPTPMGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM +P+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNILPRG-VKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY
Sbjct: 469 IGIDPDSADLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L      +        KG+   N L+         +  + 
Sbjct: 529 RIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLR-------ETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                  +  I +  +        D  +    +    N L    +K+E  
Sbjct: 582 PNTRRLVQLTISEEDMDQTM-AMMDMLLAKKRSEDRRNWLQEKGDKAEIE 630



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++ +    ++       LN             +++ ++L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQAREREFQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+  
Sbjct: 458 ASQEVHDISVAIGIDPDSADLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQG 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTISEEDMDQTMAMMDMLLAKKRSEDRRNWLQE 622


>gi|295394759|ref|ZP_06804974.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972355|gb|EFG48215.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 700

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 242/659 (36%), Positives = 344/659 (52%), Gaps = 62/659 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S Y A  +Q+L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+L GY + I
Sbjct: 1   MATSDYGARQLQVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNAVDEALGGYGENI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVTL+ DGS TV DNGRGIP D+    G++  E++MT+LHAGGKF   SY   GGLHGVG
Sbjct: 60  TVTLHEDGSVTVEDNGRGIPVDIEPRTGLTGVELVMTKLHAGGKFGGGSYSAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFING--------------------ILDNPLVVTGS 164
            SVVNALSS L + + R   +Y MSF  G                      ++ L V G 
Sbjct: 120 ASVVNALSSRLDIEVTRSSKVYRMSFKRGAPGMFTDRNEPHPDNDFTPFKKESKLEVVGK 179

Query: 165 AGN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------ 216
           A    TGT++ +     IF     FNYD L  R R+ +FL   ++I+L+D R        
Sbjct: 180 AKRGVTGTKIRYWADPQIFIRDAKFNYDHLVDRARQTAFLVPGLKITLVDNRGVAVDETG 239

Query: 217 ---EPREITMFYKGGIEAFVSY----------LDRHKKPLMQS---------PIRIQGSR 254
                R     + GGI AFV +               +   +           +  Q   
Sbjct: 240 APIPHRVEEFQFDGGISAFVDHLAHDAALTDTWRFTTQSSFKETVPVLNSSGHMESQEVE 299

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKD 313
            +I++D+A+RW +GY   +  F N I    GGTH+SG    + + I   VE +    K  
Sbjct: 300 RDITVDVALRWGNGYDTMLKSFVNIIATPKGGTHVSGFEQGIVKTIRKAVESNARRLKVG 359

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K  +  DD   G T+V+++ + +P+F  QTKE L +  VR +V   V   L++ LE    
Sbjct: 360 KDKLEKDDILAGLTAVVTVALAEPQFEGQTKEVLGTPPVRGIVSRAVEKELTSILESSHR 419

Query: 374 EAKI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
             K     +++KV+     R +AR  R+  RRK  L+ +SLP KL DC + D  ++ELF+
Sbjct: 420 ATKSQVNTLLEKVVAEMKSRISARTHRENQRRKTALESSSLPAKLYDCRKSDVDETELFI 479

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSA G+AK  R+ E QA+ P+RGKILNV++A    ML++ E   L   +G G G+  
Sbjct: 480 VEGDSAMGTAKAARNSEMQALFPIRGKILNVQKASVADMLANAECAALTQVIGAGSGRS- 538

Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---- 545
           FD+ + RY K+IIMTDADVDGAHIRTLLLT FFR M  L+  G ++   PPL+ I     
Sbjct: 539 FDLEQARYGKVIIMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVFAAVPPLHRIEVVNR 598

Query: 546 -RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            +   + Y   E  L   +      ++          + + D     +  +  +  +  
Sbjct: 599 GKANDVIYTYSEAELHKTIARLDRQKKSYKTPQRYKGLGEMDADQLAETTMDPEHRMLR 657



 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 48/66 (72%), Gaps = 2/66 (3%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEM+A QL ETT++P+ R L RV + D ++AD  F+ LMG EV PR++FI   +
Sbjct: 631 QRYKGLGEMDADQLAETTMDPEHRMLRRVTMDDVAKADTTFNLLMGSEVAPRKQFIVSGA 690

Query: 797 LPSALD 802
             ++LD
Sbjct: 691 --ASLD 694


>gi|269125855|ref|YP_003299225.1| DNA topoisomerase [Thermomonospora curvata DSM 43183]
 gi|268310813|gb|ACY97187.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM
           43183]
          Length = 696

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/575 (39%), Positives = 320/575 (55%), Gaps = 42/575 (7%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I+V L+
Sbjct: 17  YSARHLSVLEGLEAVRKRPGMYIGSTDS-RGLTHCLWEIVDNSVDEALAGHCTKISVVLH 75

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS  V DNGRGIP D+    G+   E++MTRLHAGGKF   SY  SGGLHGVG SVVN
Sbjct: 76  ADGSYEVCDNGRGIPVDIEPRTGLPGVELVMTRLHAGGKFGGVSYTASGGLHGVGASVVN 135

Query: 130 ALSSWLKLRIKREGNIYEMSFING--------------ILDNPLVVTGSAGN-DTGTEVT 174
           ALS+ L + + R+G+ + MSF  G                 + L          TGT V 
Sbjct: 136 ALSARLDVEVDRDGHTHAMSFKRGLPGEFAAPGPERRFKKKSGLRKIAEVPPGVTGTRVR 195

Query: 175 FLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IF      + +T+  R+R+ +FL   ++IS+ D+R  EP   T  + GGI  F 
Sbjct: 196 FWPDLQIFLKDARIDTETVMDRMRQTAFLVPGLEISVRDERGEEPVAETFKFDGGISEFC 255

Query: 234 SYLDRHKKPLMQSPIRIQGS-------------------RDNISIDLAMRWNDGYHENVL 274
            YL + +        R +G                      ++ +D+A+RW  GY     
Sbjct: 256 DYLAKDEPICDTLRFRGRGHFTETVPVLDEQGHLTPTDVERDLEVDVALRWGTGYDTVCK 315

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N I     GTH++G   AL R I   +  +   K     V  DD  EG T+V+++++
Sbjct: 316 SFVNVIATPKHGTHVTGFDRALVRTINEQLRATKLLKNGDEPVTKDDILEGLTAVVTVRL 375

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH----PLEAKIIVKKVLDASMVRD 390
           P+P+F  QTKE L +S    +V   V++GL    +        + + +++K++ A+  R 
Sbjct: 376 PEPQFEGQTKEVLGTSAATRIVARVVSEGLKEAFDNPKRGARQQMRAVLEKIVAAAKARI 435

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR  RD  RRK  L+ ++LP KL DC   D  +SELF+VEGDSA G+AK  R+ E QA+
Sbjct: 436 AARTHRDNQRRKNALENSALPAKLVDCRTTD-DRSELFIVEGDSALGTAKLARNSEFQAL 494

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LP+RGKILNV++A    ML + E   +I  +G G G+  FD+   RY ++I+M DADVDG
Sbjct: 495 LPIRGKILNVQKASMADMLKNAECAAIIQVVGAGSGRT-FDLEAARYGRVILMADADVDG 553

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           AHIR LLLT F+R M  ++  G ++   PPL+ I 
Sbjct: 554 AHIRCLLLTLFYRYMRPMLEAGRVFAAVPPLHRIQ 588



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 24/105 (22%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNP--------- 757
              +       L   +    R+GI     +QRYKGLGEM+A QL ETT++P         
Sbjct: 597 DKYVYCYTDAELRRKLVEFERRGIRWKEPIQRYKGLGEMDADQLAETTMDPRRRMLRRIR 656

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
                      DA +A  +F  LMG EV PRREFI   +  + LD
Sbjct: 657 LH---------DAEEAARIFDLLMGSEVAPRREFITAGA--AELD 690


>gi|145594225|ref|YP_001158522.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Salinispora tropica CNB-440]
 gi|145303562|gb|ABP54144.1| DNA topoisomerase, type IIA, subunit B, region 2 domain protein
           [Salinispora tropica CNB-440]
          Length = 702

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 240/676 (35%), Positives = 347/676 (51%), Gaps = 41/676 (6%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y+AD +  L+GLDAV+KRP MYIG TD   G+ H++ E+LDN+ DE + G+A  I VTL+
Sbjct: 26  YEADDLTHLEGLDAVRKRPGMYIGSTDS-RGVGHLVNEILDNSTDEGVAGHATSIEVTLH 84

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS  V D+GRGIPTD+H + GIS  E+++TRLHAGGKF    YK SGGLHGVG S VN
Sbjct: 85  ADGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 144

Query: 130 ALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTG--SAGNDTGTEV 173
           ALS    + ++R G I+ MSF +G+           P      L V G       TGT +
Sbjct: 145 ALSRRFDVTVRRGGKIHTMSFRHGVPGTFDGDGPQAPFAAGPGLQVIGAVKRQQRTGTSI 204

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            +      F V    + D ++ +LR  +FL   V   L D    EP E    Y  G+   
Sbjct: 205 RYWYDPRYFEVGATLDADAVRMKLRNTAFLVPGVSYLLRDHTGAEPVEERFHYPNGLTDM 264

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNI------------------SIDLAMRWNDGYHENVL 274
           V +L       +   + + G                        +++A RW  GY   V 
Sbjct: 265 VDFLAPASDRPVSGTLLVCGEGAYRENAADANGVMQANVPRRAEVEVAFRWGTGYERTVE 324

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEK-SFGSKKDKRSVIGDDCREGFTSVLSIK 333
           CFTN I    GGTH  G   ALTR +   +       K  +     DD  EG T+V+ ++
Sbjct: 325 CFTNTIRNAHGGTHRKGFERALTRTLAEAIRNTRGLLKAKEDPPTLDDILEGLTAVVHVR 384

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA--KIIVKKVLDASMVRDA 391
           +P+P+F+SQTK++L ++ +  V++  V   L AWLEE   +   + +++K+ DA+ VR  
Sbjct: 385 IPEPQFTSQTKDELSTAGITKVLQRLVEQHLKAWLEERKTKTEARTVLQKIADAARVRLT 444

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
            ++ ++  RRK  L+ AS+P KL DC     ++SE+F+VEGDSA G+A+  RS E QA+L
Sbjct: 445 QKQQKEAARRKTALEGASMPAKLVDCRSTGVERSEMFIVEGDSALGTARLARSSEYQALL 504

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           P+RGKILNV++A   ++L + E   ++  LG G G+  FD++ +RY +++IM DADVDGA
Sbjct: 505 PIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRT-FDLSAVRYGRVLIMADADVDGA 563

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSE 570
           HIRTLL+T F R M  LI  G LY   PPL+ I T+G+  Q +      E     + L +
Sbjct: 564 HIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRRPQTIYTYTQEEMEATVRRLEQ 623

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
             +               +  +                     E+A            E 
Sbjct: 624 AGKQIVTPIPRFKGLGEMDADELWETTMNPAGRAVRRITMEDAEEAERILELLMGEKVEP 683

Query: 631 NVSLASKLANRLNFIA 646
             +     A+R++  A
Sbjct: 684 RRNWLIASADRVDREA 699



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICNGDK-IKITGPCS-----LLDTIFSIGRK 732
            + +  ++Y R  I + R+      +  +   G +   I           +  +   G++
Sbjct: 568 LLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRRPQTIYTYTQEEMEATVRRLEQAGKQ 627

Query: 733 GIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
            ++ + R+KGLGEM+A +LWETT+NP  R++ R+ + DA +A+ +   LMG++VEPRR +
Sbjct: 628 IVTPIPRFKGLGEMDADELWETTMNPAGRAVRRITMEDAEEAERILELLMGEKVEPRRNW 687


>gi|311695418|gb|ADP98291.1| DNA topoisomerase IV, subunit B [marine bacterium HP15]
          Length = 631

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 223/568 (39%), Positives = 324/568 (57%), Gaps = 14/568 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MSQQQYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHAKRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS +V D+GRG+P DLHKEEG+   E+I+TRLHAGGKF+Q +Y  SGGLHGVG
Sbjct: 57  DVVLYSDGSLSVEDDGRGMPVDLHKEEGLPGVELILTRLHAGGKFSQGNYNFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSVVNALS+ L++ IKR+G ++ M+F NG   + L V  +    +TGT + F P    F 
Sbjct: 117 VSVVNALSTHLEVTIKRDGQLHRMTFANGDKASELEVIDTVGKRNTGTRLKFKPDITYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+   L+H LR  + L   + ++ + +++ E      FY+ G+  ++       + +
Sbjct: 177 SPNFSVSRLRHNLRAKAVLCPGLTVTFLQEKTGEK--DEWFYEDGLRDYLRTALADIEVV 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     S +  ++D A++W  +G    +  + N IP   GGTH++GLR+ L   +  
Sbjct: 235 PLEPFTGSFSGNKEAVDWAIQWLPEGGEAIMESYVNLIPTAQGGTHVNGLRTGLLEAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  E    VLS KM +P+FS QTKE+L S E  + +   V D
Sbjct: 295 FCEFRNLLPRG-VKLSPEDIWERAAYVLSFKMQEPQFSGQTKERLSSREAAAFISGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL +H   A+ + +  +  +       RA     RK V    +LPGKLADCS  D 
Sbjct: 354 AFSLWLNQHTDVAEALAELFISNAQ---RRLRASKKVARKKVTSGPALPGKLADCSGGDT 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELFLVEGDSAGGSAKQ R RE QA++PLRGKILN       ++L+SQE+  +  A+G
Sbjct: 411 ARSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSGEILASQEVHDIAVAIG 470

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
              G D   ++ LRY+KI I+ DAD DG HI TLL   F +    ++  G +++  PPLY
Sbjct: 471 VDPGSD--QLDGLRYNKICILADADSDGLHIATLLCALFVKHFRPVVAAGHVFVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSE 570
            +  GK   Y  DE   +  +   +  +
Sbjct: 529 RVDLGKETFYALDEHEKQGIIDRIAAEK 556



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           ++D I +  RKG IS+ R+KGLGEMN  QL ETT+ PDTR L+ + I D    D     L
Sbjct: 548 IIDRIAAEKRKGKISVTRFKGLGEMNPLQLRETTMAPDTRRLVMLTIEDGDDTDSRMDML 607

Query: 781 MGDE-VEPRREFIQE 794
           +G +    RR +++ 
Sbjct: 608 LGKKRASDRRAWLET 622


>gi|115381176|gb|ABI96237.1| DNA gyrase subunit B [Spiroplasma insolitum]
          Length = 559

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 252/542 (46%), Positives = 363/542 (66%), Gaps = 7/542 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T+   GLHH+++EV+DN+IDE L  +A+ IT+T+N D S TV+DNGRGIP ++H +  
Sbjct: 1   GATN-VRGLHHLVWEVVDNSIDEVLANFANKITITINKDESITVTDNGRGIPIEIHPKTK 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           +S  E + T LHAGGKF+  +YK+SGGLHGVG SVVNALS +LK+ +K+    Y M F N
Sbjct: 60  VSTLETVFTVLHAGGKFDSNTYKISGGLHGVGASVVNALSKYLKIEVKKNNKQYLMEFHN 119

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISL 210
            G +  P+       N+TGT VTFLP   IF     F++ T+Q+R+++L+FLN  ++ISL
Sbjct: 120 GGQILTPIKEV-GTTNETGTTVTFLPDEKIFKETTIFSFSTIQNRIKQLAFLNKGLEISL 178

Query: 211 ID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           +D +   E + +   +  GI+ +V  L++     +     ++G  DNI ++  +++ND Y
Sbjct: 179 VDLREEDEEKSVVYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNIIVEFGLQYNDNY 238

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQI-TSYVEKSFGSKKDKRSVIGDDCREGFTS 328
            EN+  F NNI   +GGTH  G + A+ R++   +   +  +K ++     DD +EG T+
Sbjct: 239 SENIFSFCNNINTHEGGTHEEGTKLAIVRELNNYFKNINKNNKGNEDKFTWDDVKEGMTT 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SI+ PDP++  QTK KL +SEV+ +V + V  GL+++L E+P +AK I++K+  +   
Sbjct: 299 IISIRHPDPQYEGQTKTKLGNSEVKKIVSNIVGKGLNSYLLENPEDAKNIIEKINLSLKA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AA+RA++ TRRK V+D  SLPGKLADC  +D   +EL++VEGDSAGGSAK GR+R  Q
Sbjct: 359 RIAAQRAKETTRRKTVMDSFSLPGKLADCETKDSNIAELYIVEGDSAGGSAKAGRNRRFQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGKILNVE+A+  K+  + EI ++ITALG G+ +DSF+  KLRY K+IIMTDADV
Sbjct: 419 AILPLRGKILNVEKAKQLKVFENNEINSIITALGAGV-KDSFNEKKLRYQKVIIMTDADV 477

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DGAHIR LLLTFF+R M  LI NG +YI +PPLY I  G +++Y   +  LE Y     +
Sbjct: 478 DGAHIRILLLTFFYRYMKDLIENGNVYIAQPPLYKIQNGNNIRYAYTDNELETYKEELLV 537

Query: 569 SE 570
             
Sbjct: 538 KN 539



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
            I  +     + E    L     N +N I          S N   +  +++   +     
Sbjct: 419 AILPLRGKILNVEKAKQLKVFENNEINSIITALGAGVKDSFNEKKLRYQKVI--IMTDAD 476

Query: 677 LEGSSIF----SFGSKY-KRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-- 729
           ++G+ I     +F  +Y K +  N         L  I NG+ I+     + L+T      
Sbjct: 477 VDGAHIRILLLTFFYRYMKDLIENGNVYIAQPPLYKIQNGNNIRYAYTDNELETYKEELL 536

Query: 730 GR--KGISMQRYKGLGEMNASQL 750
            +  K   +QRYKGLGEMN  QL
Sbjct: 537 VKNIKNYMIQRYKGLGEMNPEQL 559


>gi|120555705|ref|YP_960056.1| DNA topoisomerase IV subunit B [Marinobacter aquaeolei VT8]
 gi|120325554|gb|ABM19869.1| DNA topoisomerase IV subunit B [Marinobacter aquaeolei VT8]
          Length = 631

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/568 (39%), Positives = 323/568 (56%), Gaps = 14/568 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MSEQQYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S +V D+GRG+P DLHKEEG+   E+I++RLHAGGKF+Q +Y  SGGLHGVG
Sbjct: 57  DVVLHSDNSLSVEDDGRGMPVDLHKEEGLPGVELILSRLHAGGKFSQGNYNFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSVVNALS+ L++ IKR+G ++ M+F NG   + L V  +    +TGT + F P    F 
Sbjct: 117 VSVVNALSTHLEVTIKRDGQVHRMTFANGDKASELEVVDTVGKRNTGTRLKFTPDPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+   L+H LR  + L   + ++ + +++ E      FY+ G+  ++       + +
Sbjct: 177 SPNFSVSRLRHNLRAKAVLCPGLTVTFLQEKTGEK--DEWFYEDGLRDYLRTALADIEAV 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     S +  ++D A++W  +G    +  + N IP   GGTH++GLR+ L   +  
Sbjct: 235 PLEPFTGSFSGNKEAVDWAIQWLPEGGDAVLESYVNLIPTAQGGTHVNGLRTGLLEAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  E    VLS KM +P+FS QTKE+L S E  + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLSPEDIWERVAYVLSFKMQEPQFSGQTKERLSSREAAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL +H   A+ + +  +  +       RA     RK V    +LPGKLADCS  D 
Sbjct: 354 AFSLWLNQHTDIAEALAELFISNAQ---RRLRASKKVARKKVTSGPALPGKLADCSGGDT 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELFLVEGDSAGGSAKQ R RE QA++PLRGKILN       ++L+SQE+  +  A+G
Sbjct: 411 ARSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSGEILASQEVHDIAVAIG 470

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
              G D  D+  LRY+KI I+ DAD DG HI TLL   F +    L+  G +++  PPLY
Sbjct: 471 VDPGSD--DLAGLRYNKICILADADSDGLHIATLLCALFVKHFRPLVAAGHVFVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSE 570
            +  GK   Y  DE   +  +   +   
Sbjct: 529 RVDLGKETFYALDEHEKQGIIDRLAAEN 556



 Score = 90.8 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           ++D + +  RKG I + R+KGLGEMN  QL ETT+ PDTR L+ + + +    D+    L
Sbjct: 548 IIDRLAAENRKGKIQVTRFKGLGEMNPLQLRETTMAPDTRRLVMLTLEEGDDTDERMDML 607

Query: 781 MGDE-VEPRREFIQ 793
           +G +    RR +++
Sbjct: 608 LGKKRASDRRAWLE 621


>gi|269468716|gb|EEZ80341.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [uncultured SUP05 cluster bacterium]
          Length = 627

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 226/640 (35%), Positives = 340/640 (53%), Gaps = 20/640 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S YDA SI++L GL+ V+KRP MY   TD E   +H+  EV+DN++DE++ G+A  I V 
Sbjct: 2   SKYDAASIEVLTGLEPVRKRPGMY---TDTERP-NHLAQEVIDNSVDEAVAGHASKINVV 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GS +V D+GRG+P D+H +EG    EVI+T+LHAGGKF+  SY+ SGGLHGVG+SV
Sbjct: 58  LYKNGSLSVEDDGRGMPVDIHPKEGQPGVEVILTKLHAGGKFSNDSYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++ IKR+   Y ++F +G     L   G+    +TGT V F+P +  F    
Sbjct: 118 VNALSTSVEIWIKRDAKQYYITFADGFKKTELEELGNVGKRNTGTMVKFMPDTQFFDTIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H LR  + L   ++I+  ++   +       YK G++ ++S        L  S
Sbjct: 178 FSVTRLRHNLRSKAVLCPGLEINFYNE--VDGTTDKWIYKEGLKDYLSMALDGLDCLPTS 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENV--LCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           P  +  +     ++ ++ W + Y+ NV    + N IP  +GGTH++GLRS LT  +  + 
Sbjct: 236 PFVVDFTSPEQQLNCSLAWTE-YNTNVVAESYVNLIPTINGGTHVNGLRSGLTDALKEFC 294

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  DD  +    VLSIK+ DP+FS QTKE+L S E    V + + D  
Sbjct: 295 EFRN-LIPKNIKITPDDVWQKIAYVLSIKILDPQFSGQTKERLSSRESAGFVSNVIKDAF 353

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +H   A+ I +  +  +  R    +      RK ++   +LPGKL+DC+  D  +
Sbjct: 354 SLWLNQHTNVAEKIAELAIMNAQARLKTGKK---IVRKKIISGPALPGKLSDCTSSDLNQ 410

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+FLVEGDSAGGSAKQ R +E QAILPLRGKILN      +++L+S EI  +  ++  G
Sbjct: 411 TEVFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVDSEQVLASNEIHDI--SVAIG 468

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           +  DS D+++LRY KI I+ DAD DGAHI TL+   F +  P L+  G +++  PPLY +
Sbjct: 469 LEPDSSDLSELRYGKICILADADSDGAHIATLICALFVKHFPKLVREGHVFVAMPPLYRV 528

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D    +  +       +         V     L       L+   +  D 
Sbjct: 529 DAGKQVHYALDNNERDSIIRKIESENKRVKI----QVQRFKGLGEMNPSQLRETTMFPDT 584

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                 T      +    +    ++        L  + N 
Sbjct: 585 RRLIQLTLDNPLQVEQTMDMLLSKKRAPDRKQWLEEKGNL 624



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 2/76 (2%)

Query: 721 SLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           S++  I S  ++  I +QR+KGLGEMN SQL ETT+ PDTR L+++ + +  Q +     
Sbjct: 545 SIIRKIESENKRVKIQVQRFKGLGEMNPSQLRETTMFPDTRRLIQLTLDNPLQVEQTMDM 604

Query: 780 LMGDEVEP-RREFIQE 794
           L+  +  P R+++++E
Sbjct: 605 LLSKKRAPDRKQWLEE 620


>gi|238762440|ref|ZP_04623411.1| DNA topoisomerase 4 subunit B [Yersinia kristensenii ATCC 33638]
 gi|238699425|gb|EEP92171.1| DNA topoisomerase 4 subunit B [Yersinia kristensenii ATCC 33638]
          Length = 631

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/636 (35%), Positives = 329/636 (51%), Gaps = 17/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+IM RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTEQRWCYADGLTDYLMEAVNGLITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +       G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 VPFVGSFAGDTEAIDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-IKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DEE     L               KG+   N L+        +D   + 
Sbjct: 530 IDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQ---LRETTLDPNTRR 586

Query: 604 F--YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                  D    +   +  +   +   E   +   +
Sbjct: 587 LVQLTIGDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 100/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKR--IFSNRIEENYL-----------TILSLICN 710
             +    +     ++  S      +Y +  I ++   +                 +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  +   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTIGDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622


>gi|167077369|gb|ABZ10906.1| DNA gyrase subunit B [Burkholderia ambifaria]
          Length = 630

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 273/634 (43%), Positives = 392/634 (61%), Gaps = 20/634 (3%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALSSWL+L ++R G  + M F  G+              +P++VTG    + GT
Sbjct: 1   GVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPMLVTGDTE-NRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ 
Sbjct: 60  EVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 178 LRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TRRKGVLD   LP
Sbjct: 238 VRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS
Sbjct: 298 GKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  
Sbjct: 358 EQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIER 417

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L    
Sbjct: 418 GYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAAAISGDALGELA 477

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              L    +I+     +D   +E  +     +  S++    + A  L   L+  A K++ 
Sbjct: 478 RSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHAALHDDALKNDV 536

Query: 652 S----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +        + V+R   G     V++     +   +     ++  +        +
Sbjct: 537 RVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVTTADTFKGLIGEGAVI 596

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                 + ++   S +  + +   + +S QRYKG
Sbjct: 597 KRGERSMAVSDFKSAMKWLLADAERNVSKQRYKG 630


>gi|87119648|ref|ZP_01075545.1| DNA topoisomerase IV subunit B [Marinomonas sp. MED121]
 gi|86165124|gb|EAQ66392.1| DNA topoisomerase IV subunit B [Marinomonas sp. MED121]
          Length = 632

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 221/574 (38%), Positives = 334/574 (58%), Gaps = 12/574 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ADSI++L GL+ V+KRP MY   TD     +H+  EV+DN++DE+L  +AD +
Sbjct: 1   MSANQYNADSIEVLSGLEPVQKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAKHADKV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS +V DNGRG+P D+H EEGIS  E+I+T+LHAGGKF+  +Y+ SGGLHGVG
Sbjct: 57  EVTLHKDGSLSVEDNGRGMPVDIHPEEGISGVELILTKLHAGGKFSGDNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSVVNALS+ L + +KR+G  + ++F +G+    L   G+    +TGT+V+F      F 
Sbjct: 117 VSVVNALSTQLDVWVKRDGKQFHIAFADGLKTQDLTEIGTCGKKNTGTKVSFKADPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
               +   L+H L+  + L S + +  ID+   E  +   F++ G++ +++  +   + L
Sbjct: 177 SAKISVTRLKHLLKAKAVLCSGLHMIFIDESGAETVKEEWFFQDGLKDYLAQANAGFELL 236

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +SP     +     +D A++W  +G       + N IP   GGTH++GLR+ L   I  
Sbjct: 237 PESPFVGGMTEVTQGVDWAVQWLPEGGELVTESYVNLIPTAQGGTHVNGLRTGLLEAIRE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + +      +    +  +D  E  + VLS K+ +P+FS QTKE+L S ++ + + + V D
Sbjct: 297 FCDFRNLLPRG-VKLTAEDVWERCSYVLSAKLQEPQFSGQTKERLSSRQIVAFISATVKD 355

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL +H  + + I   V+ ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 356 AFSLWLNKHVEDGQKIADIVISSAQ---KRMRASKKVVRKKITQGPALPGKLADCAGQDT 412

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQEI  +  ALG
Sbjct: 413 VRSELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNSWEVDSSEVLASQEIHDISVALG 472

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
                +  D+++LRY K+ I+ DAD DG HI TLL   F R  P+L+  G +++  PPLY
Sbjct: 473 VDPADE--DLSQLRYGKLCILADADSDGLHIATLLCALFVRHFPALVKAGHIFVAMPPLY 530

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
            I   K + Y  D+E  +  L   +   +     
Sbjct: 531 RIDVAKEVHYALDDEEKDIILHKLAAEHKRSTPN 564



 Score = 90.8 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 9/73 (12%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM-----GDEVEPRR 789
           ++QR+KGLGEMN SQL ETT+ PDTR L+++ + DA    +   RL+     GD    R+
Sbjct: 564 NVQRFKGLGEMNPSQLRETTMAPDTRRLIQLTMEDADTTGEALDRLLSKKRAGD----RK 619

Query: 790 EFIQENSLPSALD 802
            +++     + +D
Sbjct: 620 IWLETYGNLATID 632


>gi|167077373|gb|ABZ10908.1| DNA gyrase subunit B [Burkholderia anthina]
          Length = 630

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 277/634 (43%), Positives = 394/634 (62%), Gaps = 20/634 (3%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALSSWL+L ++R+G    M F  G+              +P+ VTG    + GT
Sbjct: 1   GVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLETVDGVEVSPMQVTGDTE-NRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ 
Sbjct: 60  EVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV ++++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEFINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 178 LRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LP
Sbjct: 238 VRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS
Sbjct: 298 GKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  
Sbjct: 358 EQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIER 417

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L    
Sbjct: 418 GYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELA 477

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              L    +I      +D   +E AV+ GV    S++E   + A  L   L+  A K+E 
Sbjct: 478 RSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEV 536

Query: 652 S----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +        + V+R   G     V++     +   +     +N  +        +
Sbjct: 537 RVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGDGAVI 596

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                 + +T   + +  + +   + +S QRYKG
Sbjct: 597 KRGERSMAVTDFKNAMKWLLADAERNVSKQRYKG 630


>gi|106734225|gb|ABF82589.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. A1]
          Length = 492

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 258/495 (52%), Positives = 352/495 (71%), Gaps = 4/495 (0%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T    GLHH+++E++DN+IDE+L GY D I VT+    S  V DNGRGIP D+ +
Sbjct: 1   MYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVDIQE 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ +KR   +Y  +
Sbjct: 60  KMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKLYYQA 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQI 208
           +  G+    L + G    +TGT + F P  +IF    +++YD L  RLREL+FLN  + I
Sbjct: 120 YHRGVPVADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNKGLTI 178

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            + D R+ EP   +  Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A+++NDG
Sbjct: 179 EITDDRADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQYNDG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  N+  FTNNIP  +GGTH +G ++ALTR I  Y +K    K+   ++ G+D REG T+
Sbjct: 239 FAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGEDVREGMTA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK P+P+F  QTK KL +S+ R+  ++  +     ++ E+P  A+ IV+K + AS  
Sbjct: 299 IVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMMASRA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AA+RAR+LTRRKGVL+++SLPGKLADCS RD   SE+++VEGDSAGGSAK GR R  Q
Sbjct: 359 RMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRDRHFQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMTDADV
Sbjct: 419 AILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMTDADV 477

Query: 509 DGAHIRTLLLTFFFR 523
           DGAHIRTLLLTFF+R
Sbjct: 478 DGAHIRTLLLTFFYR 492


>gi|332535128|ref|ZP_08410938.1| topoisomerase IV subunit B [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035446|gb|EGI71944.1| topoisomerase IV subunit B [Pseudoalteromonas haloplanktis ANT/505]
          Length = 629

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/638 (35%), Positives = 336/638 (52%), Gaps = 15/638 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + + +Y+A++I++L GLD VK+RP MY   TD     +H+  EV+DN++DE++ G+A  I
Sbjct: 1   MSDQNYNAEAIEVLNGLDPVKRRPGMY---TDTVRP-NHLGQEVIDNSVDEAMAGHATRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  VSD+GRG+P D+H EEGI   E+I T+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHEDNSLEVSDDGRGMPIDIHPEEGIPGVELIFTKLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ ++R+   Y M+F NG     L V G+    +TGT V F      F 
Sbjct: 117 ISVVNALSTRVEVTVRRDAQQYRMAFENGDKVEDLSVIGTVGKRNTGTTVRFWADVSYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++   L H L+  + L   ++I  ++K++ E +E       G++ ++    +  + L
Sbjct: 177 SPNYSITKLNHLLKAKAVLCPGLRIKFVNKQTKETKEWFYET--GLKDYLIEAVKGFETL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            Q P   +        D A+ W  +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PQDPFVGEFKSSIEGADWAVVWLPEGGESIAESYVNLIPTAQGGTHVNGLRQGLLEAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E  + VLS+KM DP+F+ QTKEKL S    + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRSCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL EH   A+++ +  +  +  R    RA     RK V    +LPGKL DCS  D 
Sbjct: 354 SFSLWLNEHTDTAELLAELCISNAQSRL---RAAKKVVRKRVTAGPALPGKLTDCSAADN 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  ++ 
Sbjct: 411 DRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  +S D++ LRY+KI I+ DAD DG HI TLL   F R  P L+  G +Y+  PPL+
Sbjct: 469 LGIDPESTDMSGLRYNKICILADADSDGLHIATLLCALFVRHFPELVKTGHVYVAMPPLF 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L      ++       +           + +   +D   +
Sbjct: 529 RIDIGKEVYYALDEEEKTAILARIEAEKKRGKVNVQRFKGLGEMNPLQLRE-TTMDPNTR 587

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                     +E   +  +   +              N
Sbjct: 588 RLVQLTLDEEVETMEMMDMLLAKKRSPDRRQWLEDHGN 625



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 58/103 (56%), Gaps = 8/103 (7%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +   +K  I      L  I +  ++G +++QR+KGLGEMN  QL ETT++P
Sbjct: 531 DIGKEVYYALDEEEKTAI------LARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDP 584

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEP-RREFIQENSLPS 799
           +TR L+++ + +  +  ++   L+  +  P RR++++++   +
Sbjct: 585 NTRRLVQLTLDEEVETMEMMDMLLAKKRSPDRRQWLEDHGNKA 627


>gi|254482729|ref|ZP_05095967.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214037088|gb|EEB77757.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 628

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/632 (36%), Positives = 336/632 (53%), Gaps = 15/632 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A+ I++L GL+ V+KRP MY   TD     +H+  EV+DN++DE+L G+AD I V 
Sbjct: 2   SQYTAEDIEVLTGLEPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHADQIDVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+  GS +VSDNGRG+P D+H E+G    EVI++ LHAGGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 58  LHKGGSVSVSDNGRGMPVDIHPEQGKPGVEVILSTLHAGGKFSNKNYEFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALSS L + IKR+G++++++F  G   + L V  S    +TGT V F P +  F   +
Sbjct: 118 VNALSSELVVSIKRDGSVHQITFSGGEKTSDLAVIDSCGKRNTGTMVKFTPDAKYFDSIN 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L H LR  + L   +++   D++  E +E     + G+  +++        + + 
Sbjct: 178 FSVSRLVHVLRAKAVLCPGLRVKFKDEKKGETQEWYY--EDGLTDYLADATIDFPAIPEE 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     S  +  +D A++W  +G       + N IP   GGTH++GLR+ L   +  + E
Sbjct: 236 PFVGSFSGSSEGVDWAVQWLPEGGEVIAESYVNLIPTAQGGTHVNGLRTGLLDAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  DD  +    VLS K+ DP+FS QTKE+L S E  + V     D  S
Sbjct: 296 LRSLLPRG-IKLAPDDIWDRCCYVLSSKLGDPQFSGQTKERLSSREAAAFVSGVSKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  EA+ + +  ++ +  R  + +      RK V    +LPGKLADCS  DP + 
Sbjct: 355 LWLNQHTEEAEKLAEMCINNAQSRMRSAKK---IVRKKVSAGPALPGKLADCSGEDPTRG 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN       ++L+SQE+  +  ++  GI
Sbjct: 412 ELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEVDSQEILASQEVHNI--SIALGI 469

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
              S D++ LRYHK+ I+ DAD DG HI TL+   F R   SL+  G +Y+  PPLY I 
Sbjct: 470 DPASDDLSDLRYHKVCILADADSDGLHIATLICALFVRHFRSLVAAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   +  L      ++       +           + +   +D   +   
Sbjct: 530 VGKEVFYALDEGEKQGVLDRIEAEKKRGNVNVQRFKGLGEMNPLQLRE-TTMDPDTRRLV 588

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                       +  +   +       +   K
Sbjct: 589 RLVLDAGDGTNNMLDMLLAKKRASDRKAWLEK 620



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 7/83 (8%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +  G+K  +      LD I +  ++G +++QR+KGLGEMN  QL ETT++P
Sbjct: 529 DVGKEVFYALDEGEKQGV------LDRIEAEKKRGNVNVQRFKGLGEMNPLQLRETTMDP 582

Query: 758 DTRSLLRVKITDASQADDLFSRL 780
           DTR L+R+ +      +++   L
Sbjct: 583 DTRRLVRLVLDAGDGTNNMLDML 605


>gi|261819682|ref|YP_003257788.1| DNA topoisomerase IV subunit B [Pectobacterium wasabiae WPP163]
 gi|261603695|gb|ACX86181.1| DNA topoisomerase IV, B subunit [Pectobacterium wasabiae WPP163]
          Length = 631

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/644 (35%), Positives = 342/644 (53%), Gaps = 19/644 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MAQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ ++R+G +Y+++F NG     L VTG+ G  +TGT V F P    F 
Sbjct: 117 ISVVNALSTRVEVTVRRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPDETFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +      + G+  ++         L
Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIVFKDKVNNTEQRWCY--QDGLNDYLCEAINGLITL 234

Query: 244 MQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + P    I G  + +     +   +G       + N IP   GGTH++GLR  L   + 
Sbjct: 235 PEKPFLGSITGETEAVDW-ALLWLPEGGDLLTESYVNLIPTPMGGTHVNGLRQGLLDAMR 293

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + E      +    +  DD  E    VLS+KM +P+F+ QTKE+L S +  + V   V 
Sbjct: 294 EFCEFRNILPRG-VKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAFVSGVVK 352

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D
Sbjct: 353 DAFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
             ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++
Sbjct: 410 LSRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SV 467

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
             GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PPL
Sbjct: 468 AIGIDPDSTDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVAMPPL 527

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I  GK + Y  DEE     L               KG+         + +        
Sbjct: 528 YRIDLGKEVYYALDEEEKAGVLEQLKRKRGKPNVQRFKGL--GEMNPPQLRETTLDPNTR 585

Query: 602 KDFYPNHDKTFIEQ-AVISGVFNCESDQEINVSLASKLANRLNF 644
           +      +   +EQ   +  +   +   E   +   +  +++  
Sbjct: 586 RLVQLTINDEEMEQTMAMMDMLLAKKRSEDRRNWLQEKGDKVEL 629



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 105/295 (35%), Gaps = 48/295 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++ +    ++       LN             +++ ++L
Sbjct: 410 LSR--TELFLVEGDSAGGSAKQAREREFQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+  
Sbjct: 458 ASQEVHDISVAIGIDPDSTDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQG 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPPQLRE 577

Query: 753 TTLNPDTRSLLRVKITDASQADD---LFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I D  + +    +   L+  +  E RR ++QE      L++
Sbjct: 578 TTLDPNTRRLVQLTIND-EEMEQTMAMMDMLLAKKRSEDRRNWLQEKGDKVELEV 631


>gi|251791330|ref|YP_003006051.1| DNA topoisomerase IV subunit B [Dickeya zeae Ech1591]
 gi|247539951|gb|ACT08572.1| DNA topoisomerase IV, B subunit [Dickeya zeae Ech1591]
          Length = 631

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 233/648 (35%), Positives = 348/648 (53%), Gaps = 22/648 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHPDQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ ++R+G +Y+++F NG     L VTG+ G  +TGT V F P +  F 
Sbjct: 117 ISVVNALSTRVEVTVRRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPDASFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+  +L H L+  + L   V+I   D  +   +      +GG+  ++         L
Sbjct: 177 SPRFSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTEQRWCY--QGGLSDYLCEAVNGLPTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P       D  +++ A +   +G    +  + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFVAAIPGDTEAVEWALLWLPEGGELLMESYVNLIPTLQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNILPRG-VKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 SKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY
Sbjct: 469 IGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRGGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L       E       K  + +      ++     +  + 
Sbjct: 529 RIDLGKEVYYALDEEEKAGIL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  +  I +  I        D  +    +    N L    +K+E
Sbjct: 582 PNTRRLVQLTINEQDIEQTL-ATMDMLLAKKRSEDRRNWLQEKGDKAE 628



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 102/294 (34%), Gaps = 46/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LSK--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +  G
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRG 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + GI           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGILEQLKRKKGKPNVQRFKGLGEMNPMQLRE 577

Query: 753 TTLNPDTRSLLRVKIT--DASQADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I   D  Q       L+  +  E RR ++QE    + LD+
Sbjct: 578 TTLDPNTRRLVQLTINEQDIEQTLATMDMLLAKKRSEDRRNWLQEKGDKAELDV 631


>gi|83655611|gb|ABC39589.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 630

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 275/634 (43%), Positives = 394/634 (62%), Gaps = 20/634 (3%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALSSWL+L ++R+G    M F  G+              +P++VTG    + GT
Sbjct: 1   GVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEMVDGVEVSPMLVTGDTE-NRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ 
Sbjct: 60  EVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV ++++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEFINKTKTNLHPTVFFATGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 178 LRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LP
Sbjct: 238 VRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS
Sbjct: 298 GKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  
Sbjct: 358 EQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIER 417

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  VIS + L    
Sbjct: 418 GYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAVISGDALGELA 477

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              L    +I+     +D   +E  +   V +  S++    + A  L   L+  A K+E 
Sbjct: 478 RSYLLSKSVIERLSRLYDPAALEAIMDGVVIDL-SNEASTEASAKALHAALHDEALKNEV 536

Query: 652 S----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +        + V+R   G     V++     +   +     +N  +        +
Sbjct: 537 RVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVI 596

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                 + +T   S +  + +   + +S QRYKG
Sbjct: 597 KRGERSMAVTDFKSAMKWLLADAERNVSKQRYKG 630


>gi|238789175|ref|ZP_04632963.1| DNA topoisomerase 4 subunit B [Yersinia frederiksenii ATCC 33641]
 gi|238722707|gb|EEQ14359.1| DNA topoisomerase 4 subunit B [Yersinia frederiksenii ATCC 33641]
          Length = 631

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/636 (35%), Positives = 329/636 (51%), Gaps = 17/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+IM RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTEQRWCYADGLTDYLMEAVNGLITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +       G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 VPFVGSFAGDTEAIDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DEE     L               KG+   N L+        +D   + 
Sbjct: 530 IDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQ---LRETTLDPNTRR 586

Query: 604 F--YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                  D    +   +  +   +   E   +   +
Sbjct: 587 LVQLTIGDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  +   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTIGDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622


>gi|167077355|gb|ABZ10899.1| DNA gyrase subunit B [Burkholderia cenocepacia]
          Length = 630

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 278/634 (43%), Positives = 394/634 (62%), Gaps = 20/634 (3%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALSSWL+L ++R+G    M F  G+              +P++VTG    + GT
Sbjct: 1   GVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLETVDGVEVSPMLVTGDTE-NRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ 
Sbjct: 60  EVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 178 LRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LP
Sbjct: 238 VRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS
Sbjct: 298 GKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  
Sbjct: 358 EQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIER 417

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L    
Sbjct: 418 GYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELA 477

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              L    +I      +D   +E AV+ GV    S++E   + A  L   L+  A K+E 
Sbjct: 478 RSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEV 536

Query: 652 S----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +        + V+R   G     V++     +   +     +N  +        +
Sbjct: 537 RVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVI 596

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                 + +    S +  + +   + +S QRYKG
Sbjct: 597 KRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 630


>gi|154795733|gb|ABS86854.1| gyrase B [Mycobacterium avium subsp. paratuberculosis]
          Length = 542

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 243/547 (44%), Positives = 330/547 (60%), Gaps = 37/547 (6%)

Query: 22  DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81
           +AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYAD + V +  DGS  V+DNGR
Sbjct: 1   EAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYADRVDVRILDDGSVEVADNGR 59

Query: 82  GIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GIP  +H   G    +V+MT+LHAGGKF      Y VSGGLHGVGVSVVNALS+ L++ I
Sbjct: 60  GIPVAIHA-TGAPTVDVVMTQLHAGGKFGGENSGYNVSGGLHGVGVSVVNALSTRLEVNI 118

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
            R+G  +   + + +    L   G     TGT + F    DIF   +++++T+  RL+E+
Sbjct: 119 ARDGYEWSQYYDHAVP-GTLKQ-GEVTKRTGTTIRFWADPDIFETTEYDFETVARRLQEM 176

Query: 200 SFLNSSVQISLIDKR------------------------------SPEPREITMFYKGGI 229
           +FLN  + I+L D+R                                + +  T  Y GG+
Sbjct: 177 AFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKSAQEKAAESAAPHKVKHRTFHYPGGL 236

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +++R K P+ QS I   G      +++AM+WN GY E+V  F N I   +GGTH 
Sbjct: 237 VDFVKHINRTKNPIHQSIIDFGGKGPGHEVEIAMQWNGGYSESVHTFANTINTHEGGTHE 296

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
                                            REG  +V+S+K+ +P+F  QTK KL +
Sbjct: 297 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGLAAVISVKVSEPQFEGQTKTKLGN 356

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +EV+S V+   N+ L+ W E +P +AK+IV K + ++  R AAR+AR+L RRK   D+  
Sbjct: 357 TEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAVSSAQARIAARKARELVRRKSATDLGG 416

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L
Sbjct: 417 LPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVL 476

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG HI TLLLT  FR M  LI
Sbjct: 477 KNTEVQAIITALGTGI-HDEFDITKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLI 535

Query: 530 HNGFLYI 536
            +G +++
Sbjct: 536 EHGHVFL 542


>gi|319407212|emb|CBI80851.1| topoisomerase protein [Bartonella sp. 1-1C]
          Length = 692

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 239/651 (36%), Positives = 354/651 (54%), Gaps = 21/651 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + I+   Y+A SI+IL+GL+ V+ RP MYIG TD    LHH+  E++DNA+DE++ GYAD
Sbjct: 46  NEIKEGEYNALSIRILEGLEPVRLRPGMYIGGTDS-KALHHLFSEIIDNAMDEAVAGYAD 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           +I V+L+  G  TV+DNGRGIP + H +    S  EVIMT+LH+G KF+ K+Y+ SGGLH
Sbjct: 105 LIDVSLDKQGYLTVTDNGRGIPVENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLH 164

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  +++ + R+  +Y   F  GI  + L   G   N  GT V F P S I
Sbjct: 165 GVGISVVNALSDDMEVEVARDRKLYRQRFSRGIPQSSLENLGDIYNRRGTRVRFHPDSKI 224

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMFYKGGIEAFVS 234
           F     F  + +    R  ++L   V+I               P +   ++  G++ ++ 
Sbjct: 225 FGENVAFEPEQIYKMTRSKAYLFGGVKIRWNCDPKMLEGIKNVPEKDVFYFPDGLKDYLL 284

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
              +++  +       +  +   + S++ A+ W  G +  V  + N IP  +GGTH +GL
Sbjct: 285 SSLKNEYRVTSEVFSGKTKQHGSHGSVEWAIAWYGG-NACVQSYCNTIPTGEGGTHEAGL 343

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R AL R + +Y E     +     +  DD       +LS+ + +P F  QTK++L + E 
Sbjct: 344 RQALLRGLKAYAELIGNKRSA--IITSDDVMISAIVILSVFIREPEFVGQTKDRLATIEA 401

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE+ + D    WL   P EA  ++  +++ +  R   R+ ++   RK  +    LPG
Sbjct: 402 QRIVENAIRDPFDHWLANSPQEATKLLDWIVERAEERVKRRQDKE-INRKTTVRKLRLPG 460

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +KM +SQ
Sbjct: 461 KLADCSQNSAIGAELFIVEGDSAGGSAKQARNRVNQAILPLRGKILNVASAAHEKMSASQ 520

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I  LI ALG G  +  +  + LRY +IIIMTDADVDGAHI +LL+TFFF++M  LI  G
Sbjct: 521 TINDLILALGCGT-RSKYREDDLRYERIIIMTDADVDGAHIASLLITFFFQEMTDLIRQG 579

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNF 590
            LY+  PPLY I++G  + Y +D+   ++ L  +   +           G +    L+  
Sbjct: 580 HLYLAVPPLYRISQGGKVAYARDDNHKDELLKTEFTGKAKIEIGRFKGLGEMRAEQLKET 639

Query: 591 IDDALK---IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
             D  K   +   I        K  +E  + +         + N + A  L
Sbjct: 640 TMDPQKRTLLRIAIDAVDMQETKNTVESLMGTKPEARFRFIQENSTFADNL 690



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 13/163 (7%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILS 706
                    D+  +RI   +     ++G+ I S    +  +  ++ I + +L      L 
Sbjct: 532 GTRSKYREDDLRYERII--IMTDADVDGAHIASLLITFFFQEMTDLIRQGHLYLAVPPLY 589

Query: 707 LICNGDKIKITGPCSLLDTIFSI---GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763
            I  G K+      +  D +      G+  I + R+KGLGEM A QL ETT++P  R+LL
Sbjct: 590 RISQGGKVAYARDDNHKDELLKTEFTGKAKIEIGRFKGLGEMRAEQLKETTMDPQKRTLL 649

Query: 764 RVKIT--DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           R+ I   D  +  +    LMG + E R  FIQENS  +  LDI
Sbjct: 650 RIAIDAVDMQETKNTVESLMGTKPEARFRFIQENSTFADNLDI 692


>gi|98991108|gb|ABF60572.1| DNA gyrase subunit B [Mesoplasma lactucae ATCC 49193]
          Length = 553

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 243/538 (45%), Positives = 353/538 (65%), Gaps = 8/538 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T G +GLHH+++E+LDN+IDE++ G A  I VT+  +G   V DNGRGIP  ++ + G
Sbjct: 1   GST-GVTGLHHLVWEILDNSIDEAMAGEATHIEVTITKNGEVIVQDNGRGIPVGINHDTG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            +A E++ T+LHAGGKF+ +SYK+SGGLHGVG SVVNALS ++ + +K+ GNIY   F  
Sbjct: 60  KTALELVFTQLHAGGKFDSESYKISGGLHGVGASVVNALSLYVDVEVKKNGNIYHQVFSE 119

Query: 153 GILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISL 210
           G      + + G   +D GT V F P  +IF    DF+YDT+++++++L++LN  + I L
Sbjct: 120 GGTKETEMEIIGKT-DDHGTRVLFKPDPEIFKETVDFDYDTIRNKVKQLAYLNKGITIQL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D+R  +          GI  +V   +  K  + Q+     G  + I +++A++WN  Y+
Sbjct: 179 TDQRIDKTVTYHF--PNGIVDYVKETNTGKPAINQTVFYADGIVEKIEVEIAVQWNAEYN 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY-VEKSFGSKKDKRSVIGDDCREGFTSV 329
           E+ + F NNI  +DGG H  G + A+ R I  Y  EK     K  +    DD +EG TSV
Sbjct: 237 EDSVSFVNNINTRDGGMHEDGFKQAMVRIINRYAAEKDINKNKTPQRYNWDDIKEGMTSV 296

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +SIK  DP++  QTK KL + + +  V++ V +   ++L  +P +A  I+ K+  +   R
Sbjct: 297 ISIKHTDPQYEGQTKTKLANPDAKIAVDAVVGENFESYLWNNPEDAAAIMDKIQTSQKSR 356

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AA+RAR+ TRRK  LD  SLPGKLADC+ +DP+ +EL++VEGDSAGGSAKQGR+ + QA
Sbjct: 357 FAAQRAREDTRRKTALDGFSLPGKLADCASKDPEFAELYIVEGDSAGGSAKQGRNSKYQA 416

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPLRGK+LNVE+ +  K  ++QEI T+ITA+G G+ ++ FDI+K+RY KI+IMTDADVD
Sbjct: 417 ILPLRGKVLNVEKVQPAKAFTNQEIKTMITAIGAGV-REDFDISKIRYGKIVIMTDADVD 475

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           GAHIR LLLTFF+R M  LI NG ++I +PPL+ I  GK + Y   ++ L+D+  N+ 
Sbjct: 476 GAHIRILLLTFFYRYMKPLIQNGNVFIAQPPLFKIEAGKQVAYAYTDKELDDFKNNEF 533



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 38/130 (29%), Gaps = 1/130 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  Q        ++   +  I     + +  S      +V      V    +    
Sbjct: 424 VLNVEKVQPAKAFTNQEIKTMITAIGAGVREDFDISKIRYGKIVIMTDADVDGAHIRILL 483

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRY 739
             F +      I +  +      +  +              L D   +    K   +QRY
Sbjct: 484 LTFFYRYMKPLIQNGNVFIAQPPLFKIEAGKQVAYAYTDKELDDFKNNEFAGKRYGIQRY 543

Query: 740 KGLGEMNASQ 749
           KGLGEM+  Q
Sbjct: 544 KGLGEMDPQQ 553


>gi|256370765|ref|YP_003108590.1| DNA gyrase B subunit [Candidatus Sulcia muelleri SMDSEM]
 gi|256009557|gb|ACU52917.1| DNA gyrase B subunit [Candidatus Sulcia muelleri SMDSEM]
          Length = 634

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 240/589 (40%), Positives = 354/589 (60%), Gaps = 14/589 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + +IQ L G++ ++ RP+MYIGD  G +GLH ++ EV+DN+IDE L GY   I +T
Sbjct: 2   ENYTSKNIQYLDGIEHIRLRPAMYIGDI-GINGLHQLLTEVIDNSIDEYLSGYCTKIRIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
            + +   TV DNGRGIP DL+K +GIS  EVIMT++ AGGKF++K+YK+SGGLHGVG+S 
Sbjct: 61  FHKNEYITVLDNGRGIPVDLYKNKGISTLEVIMTKVGAGGKFDKKAYKISGGLHGVGISC 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS +L  RI R G IYE  +  GI    L      +     GTE+TF      F  +
Sbjct: 121 VNALSCYLLARIFRNGKIYEQIYSKGIPITKLKKLDQKNKKQMRGTEITFKVEKYFFGKK 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+Y+ + +R++ELS+LN  + + LIDKR    ++   + K GI+ F+  L + K  L +
Sbjct: 181 IFDYNLILNRIKELSYLNKGLLLILIDKRFYPNKKEFCYSKKGIKEFILNLSKDKNYLKK 240

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +     I ++LAM++N  + E +  + NNIP   GGTH+SG + ALT+    +  
Sbjct: 241 FFYLKKK-NKKIQLELAMKFNSSFKEKIYSYVNNIPTPSGGTHISGFKRALTKTFKKFYY 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K    KK K  + G D REG  +++S+++ +P+F  QTK+KL ++E+  +VE  V++ L+
Sbjct: 300 KYNLYKKYKIEISGKDIREGIIAIISMRIANPQFEGQTKKKLGNNEIIGLVEKIVSNELN 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            ++  +PL  K I+ KV        A ++ R+L +++ +L     P KLADCS  +    
Sbjct: 360 LFINANPLLKKKILNKVFLTVKALQAYKKVRNLIQKQIIL-----PLKLADCSSNNHNLC 414

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E++LVEGDSAGG+AKQGR R+ QA+ PLRGKILNVE++  +K+  ++EI  L + LG  +
Sbjct: 415 EIYLVEGDSAGGTAKQGRERKFQAVFPLRGKILNVEKSMKEKIFENEEIRNLFSVLGIFL 474

Query: 486 GQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
            +       +I  +RY KIIIMTDAD+DG+HI TL+LTFFFR +  LI  G++YI  PPL
Sbjct: 475 RKKEKKIVLNIKNIRYKKIIIMTDADIDGSHISTLILTFFFRNLKILIEKGYIYIATPPL 534

Query: 542 YGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRN 589
           + I       Y  +E+  E  L N  +L           G +    L  
Sbjct: 535 FLIKHFNKKLYAWNEKEKEKILKNIGNLKGIHIQRYKGLGEMDAEQLWE 583



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 107/261 (40%), Gaps = 16/261 (6%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +      Q +   +  +    N +L E   +  DS G  +K            +   I 
Sbjct: 388 KVRNLIQKQIILPLKLADCSSNNHNLCEIYLVEGDSAGGTAKQGRERKFQAVFPLRGKIL 447

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
           +   +  +   E   I  +F+      +       + N  N   +K        I+ S I
Sbjct: 448 NVEKSMKEKIFENEEIRNLFSVLGI-FLRKKEKKIVLNIKNIRYKKIIIMTDADIDGSHI 506

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
               +       F      +   G  Y       + +++   L      +K KI      
Sbjct: 507 STLIL-----TFFFRNLKILIEKGYIYIATPPLFLIKHFNKKLYAWNEKEKEKI------ 555

Query: 723 LDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
              + +IG  KGI +QRYKGLGEM+A QLWETT+NP  R+L +VKI +   A+ +FS LM
Sbjct: 556 ---LKNIGNLKGIHIQRYKGLGEMDAEQLWETTMNPLNRTLRQVKIDNFKNANYIFSMLM 612

Query: 782 GDEVEPRREFIQENSLPSALD 802
           G  V  RR+FI++N+L + +D
Sbjct: 613 GKNVFKRRKFIEQNALFANID 633


>gi|115381174|gb|ABI96236.1| DNA topoisomerase IV subunit B [Mesoplasma entomophilum]
          Length = 552

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/558 (41%), Positives = 334/558 (59%), Gaps = 12/558 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L GY   I VTL  +GS TV+DNGRG+P  +H   G
Sbjct: 1   GSTD-VRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADNGRGVPIGMHS-TG 58

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
               EVI + LHAGGKF    YK SGGLHGVG SVVNALS    + I R+  + E+ F N
Sbjct: 59  RPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTIYRDKKVNEIEFTN 118

Query: 153 GILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           G   N PL   G   N TGT V FLP   IF+   FN+ T+  RL+E + LNS ++I++ 
Sbjct: 119 GGKLNIPLTEVG-TTNKTGTVVNFLPDDSIFNTTKFNFTTISERLKESALLNSGLKITIS 177

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           DK + +  E     + G+  FV  L       +  P+ I G    I+ ++ +++ + ++E
Sbjct: 178 DKVNDKFVEYQF--ENGLVEFVKELSSEFT-HITDPVVITGESKRIASEICIQYTEDFNE 234

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            +L F NN+   DGGTH++G ++ L R I  Y + +   K     +  +D REG  ++++
Sbjct: 235 TILGFANNVKTGDGGTHITGFKTGLVRAINDYAKNNKILKDKDPRLDSNDLREGLVAIVT 294

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+    +  QTK KL + + ++ VE    D ++ WL E+ + A  I++K + A   R
Sbjct: 295 VKIPEDLIEYEGQTKGKLGTPDAKTAVEQVTYDFMNFWLIENKVPATKIIEKAMLARRAR 354

Query: 390 DAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           + AR+AR   R  KG     ++ GKL     R  + +EL+LVEGDSAGGSAK GR R  Q
Sbjct: 355 EEARKARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELYLVEGDSAGGSAKSGRDRTFQ 414

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+A+  +++ ++EI T+ITA+G GIG   FD++ + Y K+IIMTDAD 
Sbjct: 415 AILPLRGKVINSEKAKLTELMKNEEIQTIITAIGAGIG-QDFDVSDINYGKVIIMTDADT 473

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-GKSLQYVKDEESLEDYLINQS 567
           DGAHI+TLLLTFF+R M  LI N  ++I  PPLY +T   +   Y+ DE+ L DY    +
Sbjct: 474 DGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADRKFIYLWDEQELADYAKTAT 533

Query: 568 LSEEIELFCDSKGVISKN 585
              EI+ +     + +  
Sbjct: 534 KKYEIQRYKGLGEMNADQ 551



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 5/166 (3%)

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645
             I++   ++           +    QA++     V N E  +   +    ++   +  I
Sbjct: 388 KEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLTELMKNEEIQTIITAI 447

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
                + +  S  N   ++           +      F +      I +  +      + 
Sbjct: 448 GAGIGQDFDVSDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLY 507

Query: 706 SLICNGDK-IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
            L     K I +     L D   +  +K   +QRYKGLGEMNA QL
Sbjct: 508 KLTFADRKFIYLWDEQELADYAKTATKK-YEIQRYKGLGEMNADQL 552


>gi|114771101|ref|ZP_01448541.1| DNA topoisomerase IV subunit B [alpha proteobacterium HTCC2255]
 gi|114548383|gb|EAU51269.1| DNA topoisomerase IV subunit B [alpha proteobacterium HTCC2255]
          Length = 661

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/664 (35%), Positives = 341/664 (51%), Gaps = 31/664 (4%)

Query: 1   MSDNI------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           M+DN+       + SYDA SIQ+L+ ++ V+ RP MYIG TD    LHHM+ E++DN++D
Sbjct: 1   MADNLFSDDRPIDKSYDASSIQVLEDMEHVRLRPGMYIGGTDD-RALHHMVAEIIDNSMD 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKS 113
           E++ G+A  I V L+ +   TV DNGRGIP D+H +    SA E+I   L+AGGKF+ ++
Sbjct: 60  EAVAGHATWIEVELHENFHVTVRDNGRGIPVDMHPKFPNKSALEIIFCTLNAGGKFSGEN 119

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y+ SGGLHGVG SVVNALS ++++ + +   ++ + F  G+    L   GS  N  GT V
Sbjct: 120 YETSGGLHGVGSSVVNALSDFVRVEVAKNRELFALEFSRGLPQGKLKNLGSVQNRRGTSV 179

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLI------DKRSPEPREITMFYK 226
           TF P  +IF    +F    L    +  ++L S V+I         +     P   T  + 
Sbjct: 180 TFHPDPEIFGKSLNFKAKRLYAMAKSKAYLFSGVEIRWKVDPKCLEHNDETPITDTFRFP 239

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQ-------GSRDNISIDLAMRWNDGYHENVLCFTNN 279
            G+  +++          + P   +       G     +I+ A+ W          + N 
Sbjct: 240 NGLADYLNERLVGSSVYSEIPFAGKVQFSEKFGHSTIGNIEWAINWTPSRDSFTQSYCNT 299

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           +P  +GGTH SG  SA+ + I SY E     K    S+  DD   G  +++S  + +P+F
Sbjct: 300 VPTPEGGTHESGFWSAILKGIKSYGELINNKKSA--SITRDDVMGGGCALVSCFISEPKF 357

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK++L ++E    VE+ V D    WL  +   A  I+  ++  +  R   ++ +D T
Sbjct: 358 VGQTKDRLATTEAIKWVENSVRDHFDNWLASNNKSAGAILDYMVLKAEERLRRKQEKD-T 416

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
            RK       LPGKL DCS    + +ELF+VEGDSAGGSAK  R R+ QA+LPLRGKILN
Sbjct: 417 ARKSATKKLRLPGKLTDCSNNTREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILN 476

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A  +KM ++ EI  L  ALG   G   F+I+ LRY KIIIMTDADVDGAHI +LL+T
Sbjct: 477 VLGAASNKMSANNEINDLCQALGVQTG-TKFNIDDLRYEKIIIMTDADVDGAHIASLLMT 535

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--D 577
           FFF QM  LI NG LY+  PPL+ +T+G +  Y  D+    + +                
Sbjct: 536 FFFTQMRPLIDNGHLYMACPPLFRLTQGANRVYCMDDIEKNNMIEEGLGGRGRIDISRFK 595

Query: 578 SKGVISKNDLRNFIDD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
             G +   DL+    +      I   I +  P      +++ +           + N   
Sbjct: 596 GLGEMDAKDLKETTMNKSTRQLIQINIDEDEPGQTDDLVDRLMGKKPELRFQYIQENAKF 655

Query: 635 ASKL 638
              L
Sbjct: 656 VEDL 659



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 5/188 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N        +S  +++ +    +  ++   ++      + ++      V    +    
Sbjct: 474 ILNVLGAASNKMSANNEINDLCQALGVQTGTKFNIDDLRYEKIIIMTDADVDGAHIASLL 533

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKG-ISMQR 738
             F F      I +  +      +  L    +++         + I   +G +G I + R
Sbjct: 534 MTFFFTQMRPLIDNGHLYMACPPLFRLTQGANRVYCMDDIEKNNMIEEGLGGRGRIDISR 593

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENS 796
           +KGLGEM+A  L ETT+N  TR L+++ I +    Q DDL  RLMG + E R ++IQEN+
Sbjct: 594 FKGLGEMDAKDLKETTMNKSTRQLIQINIDEDEPGQTDDLVDRLMGKKPELRFQYIQENA 653

Query: 797 LPSA-LDI 803
                LD+
Sbjct: 654 KFVEDLDV 661


>gi|123443845|ref|YP_001007816.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090806|emb|CAL13688.1| topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 631

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/636 (35%), Positives = 330/636 (51%), Gaps = 17/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAHRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTEQRWCYADGLTDYLMEAVNGLITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +       G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 VPFVGSFAGDTEAIDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DEE     L               KG+   N L+        +D   + 
Sbjct: 530 IDLGKEVFYALDEEEKAGVLDQLKRKRGKPNVQRFKGLGEMNPLQ---LRETTLDPNTRR 586

Query: 604 F--YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                  D+   +   +  +   +   E   +   +
Sbjct: 587 LVQLTIGDEDIDKTMAMMDMLLAKKRSEDRRNWLQE 622



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLDQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  +   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTIGDEDIDKTMAMMDMLLAKKRSEDRRNWLQE 622


>gi|322831363|ref|YP_004211390.1| DNA topoisomerase IV, B subunit [Rahnella sp. Y9602]
 gi|321166564|gb|ADW72263.1| DNA topoisomerase IV, B subunit [Rahnella sp. Y9602]
          Length = 631

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/648 (36%), Positives = 340/648 (52%), Gaps = 22/648 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S+Y+ADSI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MSQSTYNADSIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I  RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHEDQSLEVIDDGRGMPVDIHAEEGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ +KR G +YEM+F NG     L VTG+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVAVKRGGEVYEMAFENGDKVQDLHVTGTCGKRNTGTSVHFWPDGSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +        G+  ++         L
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEILFKDKVNNTEQRWCY--DDGLTDYLMEAVNGLITL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +       + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKAFVGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEYRNILPRG-VKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAELCISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+ +LRY KI I+ DAD DG HI TLL   F R   SL+  G +Y+  PPLY
Sbjct: 469 IGIDPDSEDLTQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVRGGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DE+  E  L      +        KG+   N L+         +  + 
Sbjct: 529 RIDLGKEVFYALDEQEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLR-------ETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  +  I++  I        D  +    +    N L    + +E
Sbjct: 582 PNTRRLVQLTIDEDDIDQTLRM-MDMLLAKKRSEDRRNWLQEKGDTAE 628



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 104/294 (35%), Gaps = 46/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L    +S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELCISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
              N  + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 L--NMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +  G
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLTQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVRG 517

Query: 712 DKIKITGP-----------CSLLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G       +KG  ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEQEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I   D  Q   +   L+  +  E RR ++QE    + LD+
Sbjct: 578 TTLDPNTRRLVQLTIDEDDIDQTLRMMDMLLAKKRSEDRRNWLQEKGDTAELDV 631


>gi|238760033|ref|ZP_04621184.1| DNA topoisomerase 4 subunit B [Yersinia aldovae ATCC 35236]
 gi|238701720|gb|EEP94286.1| DNA topoisomerase 4 subunit B [Yersinia aldovae ATCC 35236]
          Length = 631

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/586 (38%), Positives = 323/586 (55%), Gaps = 14/586 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+IM RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D  +   +        G+  ++         L
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDLVNNTEQRWCY--ADGLTDYLMEAVDGLITL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +       + D  +ID A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKAFVGSFAGDTEAIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRD 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 SMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY
Sbjct: 469 IGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I  GK + Y  DEE     L               KG+   N L+
Sbjct: 529 RIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQ 574



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  +   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTISDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622


>gi|319405640|emb|CBI79263.1| topoisomerase protein [Bartonella sp. AR 15-3]
          Length = 692

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 238/651 (36%), Positives = 353/651 (54%), Gaps = 21/651 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++ + + Y+A SI++L+GL+ V+ RP MYIG TD    LHH+  E++DNA+DE++ GYAD
Sbjct: 46  NDTEKNEYNALSIRVLEGLEPVRLRPGMYIGGTDS-KALHHLFSEIIDNAMDEAVAGYAD 104

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           +I V+L+  G  TV+DNGRGIP + H +    S  EVIMT+LH+G KF+ K+Y+ SGGLH
Sbjct: 105 LIDVSLDSQGYITVTDNGRGIPIENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLH 164

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  +++ + RE  +Y   F  GI  + L   G   N  GT V F P S I
Sbjct: 165 GVGISVVNALSDDMEVEVVRERKLYRQRFSCGIPQSDLENLGDVYNRRGTRVRFHPDSKI 224

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVS 234
           F     F  + +    R  ++L   V+I               P +    +  G++ ++ 
Sbjct: 225 FGEKAAFEAEKIYKIARSKAYLFGGVKIRWNCDPIILEGIKNVPEKAIFHFPNGLKDYLL 284

Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            L +++  +       +  +   + S++ A+ W  G +  V  + N IP  +GGTH +GL
Sbjct: 285 SLLKNEYCVTSEVFSGRTKQHSGHGSVEWAIAWYGG-NACVQSYCNTIPTGEGGTHEAGL 343

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R AL R + +Y E     +     +  DD      ++LS+ + +P F  QTK++L + E 
Sbjct: 344 RQALLRGLKAYAELIGNKRSA--IITSDDVMISAVAILSVFIREPEFVGQTKDRLATIEA 401

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE+ + D    WL   P EA  ++  V++ +  R   R+ R+   RK  +    LPG
Sbjct: 402 QRIVENAIRDPFDHWLTNSPQEATKLLDWVIERAEERLKRRQDRE-INRKTAVRKLRLPG 460

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC +     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +KM +SQ
Sbjct: 461 KLADCRQNSAAGAELFIVEGDSAGGSAKQARNRINQAILPLRGKILNVASAAREKMSTSQ 520

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
            I  LI ALG    +  +  + LRY +IIIMTDADVDGAHI +LL+TFFF++MP LI  G
Sbjct: 521 TINDLILALGCQT-RSKYREDDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIRQG 579

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNF 590
            LY+  PPLY I++G  + Y +D+   ++ L  +   +           G +    L+  
Sbjct: 580 HLYLAVPPLYRISQGGKVAYARDDIHKDELLKTEFTGKAKIEIGRFKGLGEMRAEQLKET 639

Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                    +   I        K  +E  + +         + N + A  L
Sbjct: 640 TMHPQKRTLLRVSIDSVNIQETKNIVENLMGTKPEARFRFIQENSTFADNL 690



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGDEVEP 787
           G+  I + R+KGLGEM A QL ETT++P  R+LLRV I   +  +  ++   LMG + E 
Sbjct: 616 GKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSIDSVNIQETKNIVENLMGTKPEA 675

Query: 788 RREFIQENSLPS-ALDI 803
           R  FIQENS  +  LDI
Sbjct: 676 RFRFIQENSTFADNLDI 692


>gi|115381170|gb|ABI96234.1| DNA topoisomerase IV subunit B [Mesoplasma grammopterae]
 gi|115381172|gb|ABI96235.1| DNA topoisomerase IV subunit B [Mesoplasma grammopterae]
          Length = 552

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/558 (41%), Positives = 334/558 (59%), Gaps = 12/558 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L GY   I VTL  +GS TV+DNGRG+P  +H   G
Sbjct: 1   GSTD-VRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADNGRGVPIGMHS-TG 58

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
               EVI + LHAGGKF    YK SGGLHGVG SVVNALS    + I R+  + E+ F N
Sbjct: 59  RPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTIYRDKKVNEIEFTN 118

Query: 153 GILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           G   N PL   G   N TGT V FLP   IF+   FN+ T+  RL+E + LNS ++I++ 
Sbjct: 119 GGKLNLPLTEVG-TTNKTGTVVNFLPDDSIFNTTKFNFTTISERLKESALLNSGLKITIS 177

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           DK + +  E     + G+  FV  L       +  P+ I G    I+ ++ +++ + ++E
Sbjct: 178 DKVNDKFVEYQF--ENGLVEFVKELASEFT-HITDPVVITGESKRIASEICIQYTEDFNE 234

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            +L F NN+   DGGTH++G ++ L R I  Y + +   K     +  +D REG  ++++
Sbjct: 235 TILGFANNVKTGDGGTHITGFKTGLVRAINDYAKNNKILKDKDPRLDSNDLREGLVAIVT 294

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+    +  QTK KL + + ++ VE    D ++ WL E+ + A  I++K + A   R
Sbjct: 295 VKIPEDLIEYEGQTKGKLGTPDAKTAVEQVTYDFMNFWLIENKVPATKIIEKAMLARRAR 354

Query: 390 DAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           + AR+AR   R  KG     ++ GKL     R  + +EL+LVEGDSAGGSAK GR R  Q
Sbjct: 355 EEARKARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELYLVEGDSAGGSAKSGRDRTFQ 414

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+A+  +++ ++EI T+ITA+G GIG   FD++ + Y K+IIMTDAD 
Sbjct: 415 AILPLRGKVINSEKAKLTELMKNEEIQTIITAIGAGIG-QDFDVSDINYGKVIIMTDADT 473

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-GKSLQYVKDEESLEDYLINQS 567
           DGAHI+TLLLTFF+R M  LI N  ++I  PPLY +T   +   Y+ DE+ L D+    +
Sbjct: 474 DGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADRKFIYLWDEQELADFAKTAT 533

Query: 568 LSEEIELFCDSKGVISKN 585
              EI+ +     + +  
Sbjct: 534 KKYEIQRYKGLGEMNADQ 551



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 3/165 (1%)

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645
             I++   ++           +    QA++     V N E  +   +    ++   +  I
Sbjct: 388 KEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLTELMKNEEIQTIITAI 447

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
                + +  S  N   ++           +      F +      I +  +      + 
Sbjct: 448 GAGIGQDFDVSDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLY 507

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
            L     K         L        K   +QRYKGLGEMNA QL
Sbjct: 508 KLTFADRKFIYLWDEQELADFAKTATKKYEIQRYKGLGEMNADQL 552


>gi|98990336|gb|ABF60236.1| DNA gyrase subunit B [Mesoplasma photuris]
          Length = 557

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 240/538 (44%), Positives = 342/538 (63%), Gaps = 12/538 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T  E GLHH+++E++DN+IDE++ G A++I +T+  +G   V DNGRGIP  + ++ G
Sbjct: 1   GSTSKE-GLHHLVWEIVDNSIDEAMAGMANLIKITITNEGEVIVEDNGRGIPVGIQEDSG 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
             A E++ T+LHAGGKF+  SYK+SGGLHGVG SVVNALS ++ ++  REG I+ M F N
Sbjct: 60  KRAIELVFTQLHAGGKFDSSSYKISGGLHGVGASVVNALSLYVDVQSMREGKIHHMLFSN 119

Query: 153 GIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISL 210
           G      L + G   + TGT V F P  +IF     F+++ ++++ ++LS+LN  +QI L
Sbjct: 120 GGTEQTELKIMGDT-DKTGTIVRFKPDPEIFKETITFDWEKIRNKAKQLSYLNKGIQIHL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRW 265
            D+R     E       GI  +V   +  K  +  +   + G+      + I +++A+++
Sbjct: 179 RDERIDREVEYHF--PNGILDYVKEKNETKTKINPNVFYVDGAHAGDDGNEIEVEVALQY 236

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N  Y EN++ F NNI   +GG H  GLR +LTR I  Y EK   + K       DD +EG
Sbjct: 237 NSEYQENLVTFANNINTHEGGAHEDGLRQSLTRVINRYAEKVAKANKAPSKYSWDDIKEG 296

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
              ++SI+  DP++  QTK KL + + +  V++ V      +L + P +AK I+ K  +A
Sbjct: 297 MVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAIVGAAFEEFLLKSPDDAKAILDKNANA 356

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
              R AA+RAR+ TRRK  LD  SLPGKLADC  +D + +EL+LVEGDSAGGSAK GR+R
Sbjct: 357 QKARIAAQRAREDTRRKSALDTFSLPGKLADCESKDSQIAELYLVEGDSAGGSAKTGRNR 416

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           + QAILPLRGK+LNVER    +  ++ EI +++TA+GTGI +D  D+ K RY KI+IMTD
Sbjct: 417 KFQAILPLRGKVLNVERVTEARAFTNNEIKSIVTAIGTGIKEDL-DLTKTRYGKIVIMTD 475

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           ADVDGAHIRTLLLTFF+R M  LI NG +YI +PPL+ I  GK + Y   ++ LE+  
Sbjct: 476 ADVDGAHIRTLLLTFFYRYMKELIKNGNIYIAQPPLFKIEAGKKIAYAYSDQELEELK 533



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 3/131 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E   E      +++ + +  I    ++    +      +V      V    +    
Sbjct: 428 VLNVERVTEARAFTNNEIKSIVTAIGTGIKEDLDLTKTRYGKIVIMTDADVDGAHIRTLL 487

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF--SIGRKGISMQR 738
             F +    + I +  I       L  I  G KI        L+ +          ++QR
Sbjct: 488 LTFFYRYMKELIKNGNIY-IAQPPLFKIEAGKKIAYAYSDQELEELKAGDFANSRYTIQR 546

Query: 739 YKGLGEMNASQ 749
           YKGLGEM+  Q
Sbjct: 547 YKGLGEMDPMQ 557


>gi|332162978|ref|YP_004299555.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604198|emb|CBY25696.1| topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667208|gb|ADZ43852.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862268|emb|CBX72429.1| DNA topoisomerase 4 subunit B [Yersinia enterocolitica W22703]
          Length = 631

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/636 (35%), Positives = 329/636 (51%), Gaps = 17/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAHRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTEQRWCYADGLTDYLMEAVNGLITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +       G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 VPFVGSFAGDTEAIDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DEE     L               KG+   N L+        +D   + 
Sbjct: 530 IDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQ---LRETTLDPNTRR 586

Query: 604 F--YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                  D    +   +  +   +   E   +   +
Sbjct: 587 LVQLTIGDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  +   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTIGDDDIDKTMAMMDMLLAKKRSEDRRNWLQE 622


>gi|270263149|ref|ZP_06191419.1| DNA topoisomerase IV subunit B [Serratia odorifera 4Rx13]
 gi|270042837|gb|EFA15931.1| DNA topoisomerase IV subunit B [Serratia odorifera 4Rx13]
          Length = 658

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/644 (35%), Positives = 335/644 (52%), Gaps = 17/644 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            +  S+Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  
Sbjct: 27  TMTQSTYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKR 82

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L+ D S  V D+GRG+P D+H EEG+ A E+IM RLHAGGKF+ K+Y+ SGGLHGV
Sbjct: 83  IDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGV 142

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIF 182
           G+SVVNALS+ +++ +KR+GN+Y ++F NG     L VTGS    +TGT + F P    F
Sbjct: 143 GISVVNALSTRVEVNVKRDGNVYSIAFENGDKVQELAVTGSCGKRNTGTSIHFWPDEKFF 202

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+   L H L+  + L   V+I  IDK +   +              +       P
Sbjct: 203 DSPRFSVSRLSHLLKAKAVLCPGVEIYFIDKLNNTEQRWCYQDGLTDYLMEAVNGLITLP 262

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                    G  + +     +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 263 EAPFIGNFAGDTEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 321

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 322 FCEFRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 380

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 381 AFSLWLNQNVQAAEQLAELAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTSQDL 437

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 438 NMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 495

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   SL+  G +Y+  PPLY
Sbjct: 496 IGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFSSLVKGGHVYVAMPPLY 555

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L      +        KG+   N L+        +D   +
Sbjct: 556 RIDLGKEVFYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQ---LRETTLDPNTR 612

Query: 603 DF--YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                   D   ++   +  +   +   E   +      +  + 
Sbjct: 613 RLVQLTVSDDDVVQTLAMMDMLLAKKRSEDRRNWLQDKGDMADL 656



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 103/289 (35%), Gaps = 54/289 (18%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 377 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTSQD 436

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
              N  + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 437 L--NMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 484

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++   S +  G
Sbjct: 485 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFSSLVKG 544

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 545 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRE 604

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRL-MGD------EVEPRREFIQE 794
           TTL+P+TR L+++ ++D    DD+   L M D        E RR ++Q+
Sbjct: 605 TTLDPNTRRLVQLTVSD----DDVVQTLAMMDMLLAKKRSEDRRNWLQD 649


>gi|167077371|gb|ABZ10907.1| DNA gyrase subunit B [Burkholderia pyrrocinia]
          Length = 630

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 276/634 (43%), Positives = 390/634 (61%), Gaps = 20/634 (3%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALSSWL+L ++R G  + M F  GI              +P++VTG    + GT
Sbjct: 1   GVSCVNALSSWLRLTVRRNGKKHFMEFHRGIAQERVIEKVDGVEVSPMLVTGDTE-NRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ 
Sbjct: 60  EVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYINKTKTNLHPTVFHAIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 178 LRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LP
Sbjct: 238 VRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS
Sbjct: 298 GKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  
Sbjct: 358 EQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIER 417

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L    
Sbjct: 418 GYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELA 477

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              L    +I      +D   +E  +     +  S++    + A  L   L+  A K+E 
Sbjct: 478 RSYLLSQSVIDRLSRLYDPAALEAIMDGVSIDL-SNEASTEASAKALHAALHDEALKNEV 536

Query: 652 S----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +        + V+R   G     V++     +   +     +N           +
Sbjct: 537 RVVPAYDAVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVATANTFTGLIGEGAVI 596

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                 + +T   S +  + +   + +S QRYKG
Sbjct: 597 KRGERSMAVTDFKSAMKWLLADAERNVSKQRYKG 630


>gi|117919182|ref|YP_868374.1| DNA topoisomerase IV subunit B [Shewanella sp. ANA-3]
 gi|117611514|gb|ABK46968.1| DNA topoisomerase IV subunit B [Shewanella sp. ANA-3]
          Length = 628

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 222/633 (35%), Positives = 328/633 (51%), Gaps = 15/633 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHTDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y+++F NG     L VTG+ G  +TGT V F P +  F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDASYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + LR  + L   ++I   +K + E  E     + G+  ++         L +
Sbjct: 178 NFSNSKLIYLLRAKAVLCPGLRIKFTNKHTNEVHEWYY--ESGLTDYLKAAVGDNLMLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P          + D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFIGSFKGQIEAADWAITWLPEGGDAINESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +    +LS+KM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 296 EFRN-LIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSGIVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +   A+ +    ++ +       +A     RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNSNTELAESLADMCINNAQ---RRLKASKKVARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              +  DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +YI  PPL+ I
Sbjct: 472 PDSN--DISELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   E  L   +   +      ++           + +   +D   +  
Sbjct: 530 DIGKDVYYALDEAEKEGILDRITAENKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                    E   +  +   +       +    
Sbjct: 589 VQLTIDDVEETDSLMDMLLAKKRSPDRKNWLED 621



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I D  + D L  
Sbjct: 545 EGILDRITAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDVEETDSLMD 604

Query: 779 RLMGDEVEP-RREFIQE 794
            L+  +  P R+ ++++
Sbjct: 605 MLLAKKRSPDRKNWLED 621


>gi|259907122|ref|YP_002647478.1| DNA topoisomerase IV subunit B [Erwinia pyrifoliae Ep1/96]
 gi|224962744|emb|CAX54199.1| DNA topoisomerase 4 subunit (topoisomerase IV subunit B) [Erwinia
           pyrifoliae Ep1/96]
 gi|283476925|emb|CAY72799.1| DNA topoisomerase IV, B subunit [Erwinia pyrifoliae DSM 12163]
 gi|310766325|gb|ADP11275.1| DNA topoisomerase IV subunit B [Erwinia sp. Ejp617]
          Length = 631

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/585 (38%), Positives = 321/585 (54%), Gaps = 12/585 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+ADSI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNADSIEVLSGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGHAKRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I  RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHPDQSLEVIDDGRGMPVDIHPEEGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R G +YEM+F NG     L VTG+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRNGEVYEMAFENGDKVQDLTVTGTVGKRNTGTRVQFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVTRLSHLLKAKAVLCPGVEIVFKDRLNKTEQSWCYADGLTDYLMEAVNGLPLLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + +     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 KPFVGAFSGDVEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+++ +  + ++       RA     RK +    +LPGKLADCS +D  
Sbjct: 355 FSLWLNQNVQAAEMLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCSAQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  GK + Y  DEE     L      +        KG+   N L+
Sbjct: 530 IDLGKEVYYALDEEEKAGILEQLKRKKGKPGVQRFKGLGEMNPLQ 574



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 97/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEMLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCSAQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LSR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKN 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + GI            +QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGILEQLKRKKGKPGVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTISDEDVDQTLAVMDMLLAKKRSEDRRNWLQE 622


>gi|121998762|ref|YP_001003549.1| DNA topoisomerase IV subunit B [Halorhodospira halophila SL1]
 gi|121590167|gb|ABM62747.1| DNA topoisomerase IV subunit B [Halorhodospira halophila SL1]
          Length = 636

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/648 (36%), Positives = 341/648 (52%), Gaps = 16/648 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q  +YDA  I++L GL+ V++RP MY   T+      H+  EV+DN++DE++ G+
Sbjct: 1   MTTKTQ-QTYDASDIEVLTGLEPVRRRPGMY---TETNRP-DHLAQEVIDNSVDEAVAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VT++ DGS  VSD+GRG+P D+H  EG+ A EVI+ RLHAGGKF+ KSY+ SGGL
Sbjct: 56  ARRIEVTVHADGSLEVSDDGRGMPVDMHPTEGVPAVEVILGRLHAGGKFSSKSYRYSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ L++ I+R+G  + ++F  G    PL   G    +TGT + F P + 
Sbjct: 116 HGVGVSVVNALSTRLQVHIRRDGAEHTIAFSAGERIEPLERVGKT-RETGTTLRFWPDTS 174

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI---TMFYKGGIEAFVSYLD 237
            F    F+   L+H LR  + L   + + L D    E +E    T +Y+ G+  +++   
Sbjct: 175 YFDSPRFSRARLEHLLRAKAVLCPGLTVILRDATGGEGQEPEVLTWYYEDGLRDYLAGAV 234

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              + L   P   +   ++  ++ A+ W          + N IP   GGTH++GLR+ LT
Sbjct: 235 ADYEHLPDPPFTARLGSEHEEMECALVWLPEGSGPAESYVNLIPTPQGGTHVNGLRTGLT 294

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    +  +D  E  + VLS+KM +P+F+ QTKE+L S    + V 
Sbjct: 295 EAMREFCELRNLLPRG-VRIAPEDVWEHISYVLSVKMHEPQFAGQTKERLSSRNCAAFVS 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL EH   A+ IV  V+ A       +RA     RK V    +LPGKLADC
Sbjct: 354 GAVKDAFSLWLNEHTQSAEQIVDLVVRA---AQRRQRAAKKVTRKRVGSGPALPGKLADC 410

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           + +DP +SELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++++SQE+  +
Sbjct: 411 TGQDPARSELFLVEGDSAGGSAKQAREREFQAVMPLRGKILNTWEVAPDEVMASQEVHDI 470

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ALG   G +  D++ LRYHK+ ++ DAD DGAHI TLL   F R  P+L+  G +Y+ 
Sbjct: 471 AVALGVDPGSE--DLSGLRYHKVCVLADADPDGAHIATLLCALFQRHFPALVAGGHVYVA 528

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
            PPLY I  GK   Y  D +  +  L             +++           + +   +
Sbjct: 529 MPPLYRIDVGKQTFYALDRDERQGILDRIEAERIKGKVQETRFKGLGEMNPVQLRE-TTM 587

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
               +           E   + G+                  N    +
Sbjct: 588 APDTRRLVQLTVDDPDETERLLGMLLGRGAAAQRREWLESKGNLAEIV 635



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ--RYKGLGEMNASQLWETTLN 756
           +        +   ++  I      LD I +   KG  +Q  R+KGLGEMN  QL ETT+ 
Sbjct: 536 DVGKQTFYALDRDERQGI------LDRIEAERIKG-KVQETRFKGLGEMNPVQLRETTMA 588

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGD-EVEPRREFIQE 794
           PDTR L+++ + D  + + L   L+G      RRE+++ 
Sbjct: 589 PDTRRLVQLTVDDPDETERLLGMLLGRGAAAQRREWLES 627


>gi|149916750|ref|ZP_01905252.1| type II DNA topoisomerase, B subunit [Plesiocystis pacifica SIR-1]
 gi|149822467|gb|EDM81856.1| type II DNA topoisomerase, B subunit [Plesiocystis pacifica SIR-1]
          Length = 644

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 238/651 (36%), Positives = 366/651 (56%), Gaps = 34/651 (5%)

Query: 1   MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+          SY A+SIQ+L+ +D V+ RP MYIG  + E GLHH+++E+LDN++DE 
Sbjct: 1   MAKKKSTTAKGKSYGAESIQLLQNIDHVRARPGMYIGGVNKE-GLHHIVWEILDNSVDEV 59

Query: 57  LEGYADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A  I VTL  D    T+SD+GRGIP D H E  + A   + T+L AGGKF+ +SYK
Sbjct: 60  INGHASQIKVTLEADRRGITISDDGRGIPVDKHPELKVPAVVAVFTQLGAGGKFDGESYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG +V NAL+  L++R+KR+G ++E+ F  G+ +  +   G     TGTEV  
Sbjct: 120 HSGGLHGVGAAVANALAERLEVRVKRDGKLHEVIFNRGVQEGRMSRRGKV-RGTGTEVFL 178

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  ++F      + D L+ R+   S+L+  ++I+  D+ + +       +  GI  ++ 
Sbjct: 179 RPDPEMFGQKATLDPDVLRGRIEAKSYLHKGLKITFTDESTGKS--EVFHHADGIAEYLD 236

Query: 235 Y--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
                R K  + +    ++ S +   +++A+ W +     V  + N +P  DGGTH  GL
Sbjct: 237 KLIAVRGKAAVHKGRFYLERSEEP-KLEVALAWTEATESLVASYVNGVPTPDGGTHEKGL 295

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+AL + I +Y++          S+  +D REG  ++LS  + +P+F SQTK +L + EV
Sbjct: 296 RNALGKAIRAYIDAHK-LAPKGVSIALEDIREGLIALLSTYVLEPQFQSQTKNRLNNPEV 354

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SL 410
            + VE  +   L  WL E+      IV +++ A+  R A+R A +   RK    ++   L
Sbjct: 355 ATQVEGAIAPVLEQWLHENRSIGDAIVARIVLAARARAASRAAANSVSRKNAGQVSKIGL 414

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC+  +P K ELF+VEGDSAGGSAK GR+R  QAILPLRGK+LN  +A   +++ 
Sbjct: 415 PGKLADCANNNPAKCELFIVEGDSAGGSAKMGRNRNTQAILPLRGKVLNAAQASVARVMK 474

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++E+G ++ ALG GIG+D F+I  LRYH++I++ DAD DG HI TLLLTFF++ MP LI 
Sbjct: 475 NEELGNIVKALGCGIGKD-FNIEGLRYHRVILLMDADSDGHHIATLLLTFFYKYMPELIR 533

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G +Y+ +PPL+ +  GK   +  D+  L+  L      +         G +    LR+ 
Sbjct: 534 KGHVYLAQPPLFRVDVGKETHWAADDAHLQRILAGIKRGKPEIQRFKGLGEMMPKTLRDT 593

Query: 591 -------------IDDALKIDKLIKDF----YPNHDKTFIEQAVISGVFNC 624
                        I+D L  D++I D          +  +E+A  +   + 
Sbjct: 594 TLDPKKRQLIRVGIEDELATDRVIHDLMGKDASMRYQFIMERAADADELDI 644



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 723 LDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           L  I +  ++G   +QR+KGLGEM    L +TTL+P  R L+RV I D    D +   LM
Sbjct: 562 LQRILAGIKRGKPEIQRFKGLGEMMPKTLRDTTLDPKKRQLIRVGIEDELATDRVIHDLM 621

Query: 782 GDEVEPRREFIQENSLPS-ALDI 803
           G +   R +FI E +  +  LDI
Sbjct: 622 GKDASMRYQFIMERAADADELDI 644


>gi|331006356|ref|ZP_08329667.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC1989]
 gi|330419838|gb|EGG94193.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC1989]
          Length = 628

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/640 (35%), Positives = 343/640 (53%), Gaps = 20/640 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y ++ I++L GLD VKKRP MY   T+     +H+  EV+DN++DE+L G+A  I VT
Sbjct: 2   ANYSSEDIEVLTGLDPVKKRPGMY---TETTRP-NHLAQEVIDNSVDEALAGHAKTIEVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ + + TVSD+GRG+P D+H  +     EVI++ LHAGGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 58  LHKNQAITVSDDGRGMPVDMHPVQKKPGVEVILSTLHAGGKFSDKNYEFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L + IKR+G ++++ F +G     L VTG     +TGT V FLP+ + F    
Sbjct: 118 VNALSQKLVVSIKRDGKVHDIEFSHGDKVKDLHVTGECGKRNTGTTVYFLPAPEYFDSPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H LR  + L   ++I   ++++ E      +Y+ G+  ++    R  + L ++
Sbjct: 178 FSVSRLRHVLRAKAVLCPGLKIVFTNEQTAET--EEWYYEDGLTDYLVDATRGWEVLPRA 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     S    ++D A++W  +G       + N IP   GGTH++GLR+ L   +  Y E
Sbjct: 236 PFTGSFSGSTEAVDWAVQWLPEGGEVIQESYVNLIPTAQGGTHVNGLRTGLLDAMREYCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  DD       VLS K+ DP+FS QTKE+L S E  + V     D  S
Sbjct: 296 FRSLLPRG-VKLAPDDIWVSCCFVLSSKLSDPQFSGQTKERLSSREAAAFVSGVAKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  +   +    +  +       R+     RK +    +LPGKLADCS  +P++ 
Sbjct: 355 LWLNQHTEDGDKLADFCIHNAQ---KRVRSSKKVARKKITQGPALPGKLADCSSAEPERG 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ RSRE QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARSREFQAIMPLRGKILNTWEVDSAEILASQEVHDISVAIGVDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D  ++ KLRYHK+ I+ DAD DG HI TLL   F R  P+L++NG +++  PPL+ I 
Sbjct: 472 GVD--NLEKLRYHKVCILADADSDGLHIATLLCALFLRHFPALVNNGHVFVAMPPLFRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            G  + Y  DE   +       L   +      K  + +      ++     +  +    
Sbjct: 530 VGNDVYYALDESEKQGI-----LDRIVAEKKKGKVNVQRFKGLGEMNPMQLRETTMDPDT 584

Query: 606 PNHDKTFIEQAVISG-VFNCESDQEINVSLASKLANRLNF 644
               +  I+    +  + +    ++      S L N  N 
Sbjct: 585 RRLVQLTIDAEDGAHQMLDMLLAKKRAADRKSWLENSGNL 624



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG +++QR+KGLGEMN  QL ETT++PDTR L+++ I     A  +   L
Sbjct: 546 ILDRIVAEKKKGKVNVQRFKGLGEMNPMQLRETTMDPDTRRLVQLTIDAEDGAHQMLDML 605


>gi|154238|gb|AAA27182.1| topoisomerase IV subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 630

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/583 (37%), Positives = 319/583 (54%), Gaps = 12/583 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFNGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +  + +  +D  +    VLS+KM DP+F+ Q KE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-QKLSAEDIWDRCAYVLSVKMQDPQFAGQPKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+ + +  + ++       RAR    RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAEQLAEMAIASAQ---RRLRARKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            GK + Y   EE     L      +        KG+   N ++
Sbjct: 531 LGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 105/294 (35%), Gaps = 46/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   +++         K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRARKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKN 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I+D      + +   L+  +  E RR ++QE    + LD+
Sbjct: 577 TTLDPNTRRLVQLTISDEDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLADLDV 630


>gi|269794905|ref|YP_003314360.1| DNA topoisomerase IV subunit B [Sanguibacter keddieii DSM 10542]
 gi|269097090|gb|ACZ21526.1| DNA topoisomerase IV subunit B [Sanguibacter keddieii DSM 10542]
          Length = 709

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 241/703 (34%), Positives = 365/703 (51%), Gaps = 66/703 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     SSY +  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+
Sbjct: 1   MTTASAESSYTSRHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + L+ D S TV+D+GRGIP D+  + G++  EV+ T+LHAGGKF   SY  SGGL
Sbjct: 60  CTRIGIVLHADTSVTVTDDGRGIPVDIESKTGLTGVEVVFTKLHAGGKFGGGSYTASGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------------DNPL 159
           HGVG SVVNALS+ L + + R   +++M+F  G                       ++ L
Sbjct: 120 HGVGASVVNALSARLDVEVDRASKVHKMTFRRGEPGLFDDPKTGPSPDSAFTPFVSNSEL 179

Query: 160 VVTGSAGN-DTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
            + G A    TGT V +     +F     F YD L  R+R+ +FL   + I++ D+R  E
Sbjct: 180 AIVGKAKRGTTGTRVRYWADRQVFPKTAVFAYDELVTRVRQTTFLVPGLTITVRDERGLE 239

Query: 218 -------PREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDN---- 256
                  P E T  + GG   FV +               +   +  + +   R +    
Sbjct: 240 GTPGADGPHEETFVHHGGTVDFVEFLAPDTPVTATWHLTGEGSFKETVPVLDDRGHMVAQ 299

Query: 257 -----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS- 310
                  +DLA+RW  GY   V  F N I    GG+HLSG  + L + +   VE +    
Sbjct: 300 EVSRDCEVDLALRWGTGYDTEVRTFVNIISTPKGGSHLSGFEAGLLKVMRKAVETNARKL 359

Query: 311 ----KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K +   +  DD   G T+VL++++ +P+F  QTKE L ++ VR++V   V   + A
Sbjct: 360 KVSTKDNAERIEKDDVLAGLTAVLTVRLAEPQFEGQTKEVLGTAPVRAIVARVVEQQIGA 419

Query: 367 WLEEHPLEAKI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L     + K     ++ KV+     R +AR+ ++++RRK  L+ +SLP KLADC   D 
Sbjct: 420 MLTSAKRDEKTQAALLMDKVVAEMRARLSARKQKEISRRKNALETSSLPTKLADCRSDDV 479

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELF+VEGDSA G+AK  RS + QA+LP+RGKILNV++A    ML + E   +I  LG
Sbjct: 480 ARSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDMLRNAECAAIIQVLG 539

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G+  FD+   RY K+++MTDADVDGAHIRTLLLT FFR M  L+ +G +Y   PPL+
Sbjct: 540 AGSGRS-FDLEAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPLVDSGRVYAAVPPLH 598

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            +     +      ++   Y  +++    +    D  G   K+D++ +          + 
Sbjct: 599 RV----EVIGAGSRKNEYIYTYSEAELAAVLKKLDRSGKRYKDDIQRYKGLGEMDADQLA 654

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
           +   +     + +       N E   E+   + S +A R +FI
Sbjct: 655 ETTMDPRHRTLRRVTAEHAENAERVFELL--MGSDVAPRKDFI 695



 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 6/98 (6%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
              + I       L   +  + R G      +QRYKGLGEM+A QL ETT++P  R+L R
Sbjct: 608 RKNEYIYTYSEAELAAVLKKLDRSGKRYKDDIQRYKGLGEMDADQLAETTMDPRHRTLRR 667

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           V    A  A+ +F  LMG +V PR++FI   +  S LD
Sbjct: 668 VTAEHAENAERVFELLMGSDVAPRKDFIVAGA--SDLD 703


>gi|302382976|ref|YP_003818799.1| DNA topoisomerase IV subunit beta [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193604|gb|ADL01176.1| DNA topoisomerase IV, B subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 691

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/576 (38%), Positives = 334/576 (57%), Gaps = 17/576 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A SI++L+GL+ V+KRP MYIG TD E  LHH+  EVLDNA+DE++  +A +ITV L
Sbjct: 51  SYSASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLFAEVLDNAMDEAVARHAKLITVDL 109

Query: 69  NMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           + +G  +V D+GRGIP D H +  G SA EV+MT LH+GGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 110 DAEGFLSVRDDGRGIPVDPHPKHPGKSALEVVMTVLHSGGKFSGKAYETSGGLHGVGVSV 169

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QD 186
           VNALS  L + + R+G  ++ SF  G+    +     +    GT + F P ++IF V   
Sbjct: 170 VNALSDRLDVTVWRDGFEWKQSFSRGLPLGSIEQVQPSKKK-GTLIRFHPDAEIFGVGAA 228

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKP 242
           F    L    R  ++L   V+I             P   T  +  G+   ++      + 
Sbjct: 229 FKPARLFRMARSKAYLFRGVEIKWTCAPDRITDATPETATFHFPNGLADALAERIGELET 288

Query: 243 LMQSPI-RIQGSRDNISIDLAMRW----NDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +  +   R++   +  +++ A+ W           V  + N +   DGGTH +G R+AL 
Sbjct: 289 VTPTFSGRVERKGEAGAVEWAVAWSPIGFGEADGFVQSYCNTVATPDGGTHEAGFRAALV 348

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y E +   +     +  +D      +++S+ + +P F  QTK++L SSE + +VE
Sbjct: 349 RGLKAYGELTHEKRA--VQITAEDVIANAGAMISVFIRNPEFQGQTKDRLSSSEGQRLVE 406

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + + D L  WL E+P +A +++  +++ +  R   R+ ++  +R        LPGKL+DC
Sbjct: 407 ALLRDPLDHWLTENPKQANVLLGFIIERAEDRLRRRKDKE-VQRAQATRKLRLPGKLSDC 465

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +    +ELF+VEGDSAGGSAKQ R R  QAILPLRGKILNV  A  DK+ ++ E+  L
Sbjct: 466 SRQSANGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVANATADKLRANIELSDL 525

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ALG   G   F I++LRY +I+IMTDADVDGAHI  LL+TFF+R MP +I  G L++ 
Sbjct: 526 TLALGVTTG-PRFHIDQLRYERIVIMTDADVDGAHIAALLITFFYRSMPEVIRQGRLFMA 584

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
            PPLY ++ G   +Y +DE   ++ +      +++E
Sbjct: 585 LPPLYRLSAGPLSEYARDEAHRDELMATVFKGKKVE 620



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 5/86 (5%)

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI-TDASQADDLFSR 779
            L+ T+F  G+K + + R+KGLGEM ASQL ETT++P  R+L RV +    +  +DL  R
Sbjct: 608 ELMATVFK-GKK-VELGRFKGLGEMMASQLKETTMDPKKRTLARVTLPESENDIEDLVER 665

Query: 780 LMGDEVEPRREFIQENS--LPSALDI 803
           LMG + + R  FIQ+N+    + LD+
Sbjct: 666 LMGKKADARFRFIQDNAQFAVADLDV 691


>gi|50119294|ref|YP_048461.1| DNA topoisomerase IV subunit B [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609820|emb|CAG73254.1| topoisomerase IV subunit B [Pectobacterium atrosepticum SCRI1043]
          Length = 631

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/643 (35%), Positives = 342/643 (53%), Gaps = 17/643 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MAQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ +KR+G +Y+++F NG     L VTG+ G  +TGT V F P    F 
Sbjct: 117 ISVVNALSTRVEVTVKRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPDEKFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +        G+  ++         L
Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTEQRWCYL--DGLNDYLCEAINGLITL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     S D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFLGSISGDTEAVDWALLWLPEGGELLTESYVNLIPTPMGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM +P+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNILPRG-VKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY
Sbjct: 469 IGIDPDSTDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVLGGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L               KG+         + +        +
Sbjct: 529 RIDLGKEVYYALDEEEKAGVLEQLKRKRGKPNVQRFKGL--GEMNPPQLRETTLDPNTRR 586

Query: 603 DFYPNHDKTFIEQ-AVISGVFNCESDQEINVSLASKLANRLNF 644
                 +   ++Q   +  +   +   E   +   +  +R   
Sbjct: 587 LVQLTINDEEMDQTMAMMDMLLAKKRSEDRRNWLQEKGDRAEI 629



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 6/69 (8%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD---LFSRLMGDE-V 785
           ++G  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D  + D    +   L+  +  
Sbjct: 555 KRGKPNVQRFKGLGEMNPPQLRETTLDPNTRRLVQLTIND-EEMDQTMAMMDMLLAKKRS 613

Query: 786 EPRREFIQE 794
           E RR ++QE
Sbjct: 614 EDRRNWLQE 622


>gi|50954716|ref|YP_062004.1| DNA topoisomerase IV subunit B [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951198|gb|AAT88899.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 694

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/662 (34%), Positives = 331/662 (50%), Gaps = 54/662 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +S Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I
Sbjct: 1   MASSDYSARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGHGSSI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D  RGIP D+  + G++  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 60  DVVLHPDNSVEVRDRARGIPVDVEPKTGLTGVEVVFTKLHAGGKFGSGSYAASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------------DNPLVVTG 163
            SVVNALS  L + + R+G  + MSF  G                        + L V G
Sbjct: 120 ASVVNALSERLDVEVDRDGKTWAMSFHRGEPGVFEDGEAVPGPDAPFTPFVSGSELRVVG 179

Query: 164 S-AGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
             A   TGT + +     IF+   +F+ D L  R R+ +FL   + I++ DKRS E    
Sbjct: 180 KVAKGVTGTRIRYWADRHIFTKGAEFSVDDLIGRARQTAFLVPGIAITIDDKRSAEGEST 239

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS---------------------RDNISID 260
           T  Y GG+  F  +        +    R+ G                      +    +D
Sbjct: 240 TFKYDGGLSEFADF--LAPDSPITETWRLTGEGTFTETVPVLSDSGAMVTTELKRECHVD 297

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRSVIG 319
           +A+RW  GY   +  F N I    GG+H +G    L + +   VE +    K     +  
Sbjct: 298 IALRWGTGYDTVMRSFVNIIATPKGGSHQAGFDQGLLKFLRQRVELNARRLKAGTDKLEK 357

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-- 377
           DD   G T+VL++++P+P+F  QTKE L +  VR++V   V   LS        + K   
Sbjct: 358 DDVMAGLTAVLTVRLPEPQFEGQTKEVLGTPAVRAIVAGVVQKSLSERFGSSKRDDKTQS 417

Query: 378 --IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
             ++ KV+     R +AR  ++  RRK  L+ +SLP KL DC   D   SELF+VEGDSA
Sbjct: 418 ALLLDKVVAEMKSRISARAHKETQRRKNALETSSLPAKLVDCRSSDVANSELFIVEGDSA 477

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
            G+A++ R  E QA+LP+RGKILNV++A    MLS+ E   +I  +G G G+  FDI   
Sbjct: 478 LGTARRARDSEYQALLPIRGKILNVQKASVSDMLSNAECAAIIQVIGAGSGRT-FDIGSA 536

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK- 554
           RY K+IIM+DADVDGAHIRTLLLT FFR M  +I  G ++   PPL+ +           
Sbjct: 537 RYGKVIIMSDADVDGAHIRTLLLTLFFRYMRPMIEEGRVFAAVPPLHRVVVVNPGSNPNE 596

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
              +  +  +   L +  +     +  I +      +D        +   +    +  + 
Sbjct: 597 TVYTYSEAELQAVLGDLKKRGKKYQEPIQRYKGLGEMDADQLATTTMDRGHRTLRRVRVS 656

Query: 615 QA 616
            A
Sbjct: 657 HA 658



 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 719 PCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
             ++L  +   G+K    +QRYKGLGEM+A QL  TT++   R+L RV+++ A  A+ +F
Sbjct: 606 LQAVLGDLKKRGKKYQEPIQRYKGLGEMDADQLATTTMDRGHRTLRRVRVSHAEGANRVF 665

Query: 778 SRLMGDEVEPRREFI 792
             LMG++V PR+EFI
Sbjct: 666 ELLMGNDVAPRKEFI 680


>gi|262277071|ref|ZP_06054864.1| DNA topoisomerase IV, B subunit [alpha proteobacterium HIMB114]
 gi|262224174|gb|EEY74633.1| DNA topoisomerase IV, B subunit [alpha proteobacterium HIMB114]
          Length = 646

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 217/592 (36%), Positives = 316/592 (53%), Gaps = 14/592 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + +Y A  I++L+GL  V+KRP MYIG TD E+  HH+  E+LDN+IDE++ GYA  I +
Sbjct: 4   SKTYSAKDIEVLEGLAPVRKRPGMYIGGTD-ETAYHHLANEILDNSIDEAVAGYAKEIVI 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L    +  +SD+GRGIP D H ++  +A EV+MT LH+GGKFN   YK S GLHGVG+S
Sbjct: 63  KLVNKNTIIISDDGRGIPIDKHPKKKKTALEVVMTTLHSGGKFNDSVYKSSAGLHGVGLS 122

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
           VVNALSS L +++ +   IY   +  G + N L   G      GT++TF P  +IF    
Sbjct: 123 VVNALSSKLNIQVTKSSKIYSQDYSKGKILNKLKTKGKNKIKNGTQITFSPDPEIFGKDV 182

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVSYLDRH 239
           +F  + +    +  ++L   ++IS    +         P + T+ +  G+E F+      
Sbjct: 183 NFKPEKIYELAKNKAYLQKGIKISWECNKDLLNRKSSVPSKETLLFSKGLEDFLKNEINQ 242

Query: 240 KKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              L +      G        I+ A+++N    +    F N +   +GGTH +G RS + 
Sbjct: 243 NNVLHEKVSFQSGNLEDKKGKIEFALQFNKEKIKYNKAFCNTVYNMNGGTHDAGFRSGIA 302

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + I  Y +        K     DD  +    ++S+ + +P F  QTK KL S+ V+   +
Sbjct: 303 KSIRKYAKNKNNKIVSK--ATQDDIFDQAAYIISVYISNPEFEGQTKHKLSSNFVQKYCD 360

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           SF +     WL  +   AK I+  + +    ++     ++   R+       LPGKL+DC
Sbjct: 361 SFASSAFDEWLNRNSKAAKNILNVLEEKIREKNIYDLNQN-VERQSAFRKIRLPGKLSDC 419

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           +    + +ELF+VEGDSAGGSAKQ R R  QAILPLRGKILNV+ +   K+L++ EI  L
Sbjct: 420 TSDKTEGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVKSSNAAKILANSEINNL 479

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + ALG G G++ +    LRY KIIIMTDADVDG HI TLLLTFF  +MP LI +G LY+ 
Sbjct: 480 LQALGCGRGKN-YSKKDLRYEKIIIMTDADVDGDHISTLLLTFFISEMPQLILDGHLYLA 538

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            PPLY +       Y  DE      L +   ++         G +    L+ 
Sbjct: 539 VPPLYKLNISGKSTYAIDESEKNKLLKDNKKAKIEISRFKGLGEMMPAQLKE 590



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 11/191 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +S     +   S++ N L  +     K++       + ++      V    +    
Sbjct: 459 ILNVKSSNAAKILANSEINNLLQALGCGRGKNYSKKDLRYEKIIIMTDADVDGDHISTLL 518

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F      + I    +      +  L  +G              +    +  I + R+K
Sbjct: 519 LTFFISEMPQLILDGHLYLAVPPLYKLNISGKSTYAIDESEKNKLLKDNKKAKIEISRFK 578

Query: 741 GLGEMNASQLWETTLNPDTRSLLRV-------KITDASQADDLFSRLMGDEVEPRREFIQ 793
           GLGEM  +QL ETT+N +TR L++V       K+    + + L S LMG   E R +FI 
Sbjct: 579 GLGEMMPAQLKETTMNIETRKLIKVVLPVQKPKMK---KTNKLVSDLMGKNAELRLKFIS 635

Query: 794 ENSLPS-ALDI 803
           EN+  S +LDI
Sbjct: 636 ENANKSLSLDI 646


>gi|269956776|ref|YP_003326565.1| DNA topoisomerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305457|gb|ACZ31007.1| DNA topoisomerase (ATP-hydrolyzing) [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 715

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 241/705 (34%), Positives = 361/705 (51%), Gaps = 66/705 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +    +Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+A  
Sbjct: 10  SSAEKNYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGFATK 68

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L+ D S TV+D+GRGIP D+  + G+S  EV+ T+LHAGGKF   SY  SGGLHGV
Sbjct: 69  IAVVLHADSSVTVTDDGRGIPVDVEPKTGLSGVEVVFTKLHAGGKFGGGSYTASGGLHGV 128

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------------DNPLVVT 162
           G SVVNALS+ L + + R G  Y M+F  G                        + L V 
Sbjct: 129 GASVVNALSARLDVEVDRGGKTYRMTFHRGEPGTFADGPAGASPESAFSPFIERSELAVV 188

Query: 163 GSAGN-DTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----- 215
           G A    TGT V +     IF     F+YD L  R+R+ +FL   ++I++ D+R      
Sbjct: 189 GRAKRGVTGTRVRYWADRQIFPKSAVFSYDELVTRVRQTTFLVPGLEITVRDERGLPGTP 248

Query: 216 --PEPREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDN------- 256
               P E    + GG   FV +                      + +   R +       
Sbjct: 249 GADGPHEEMFVHHGGAVDFVDFLAPDAPVTATWTLRGSETFTETVPVLDERGHMSPREVQ 308

Query: 257 --ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
               +D+A+RW  GY   +  F N I    GG+HL+G    L + +   VE +    K  
Sbjct: 309 RDCEVDIALRWGTGYDTELRTFVNIIATPKGGSHLTGFEQGLVKVVRKQVEANARRLKIS 368

Query: 315 RSVIG-----DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
               G     DD   G T+V+++++ +P+F  QTKE L ++ VR++V   V   L A L 
Sbjct: 369 AKDGGERLEKDDITAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRAIVARTVEKQLGAILT 428

Query: 370 EHPLEAKI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
               + K     ++ KV+     R +AR+ ++++RRK  L+ +SLP KLADC   D ++S
Sbjct: 429 STKRDDKAQASLLLDKVVAEMRARVSARKQKEISRRKNALETSSLPAKLADCRSDDVERS 488

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSA G+AK  RS + QA+LP+RGKILNV++A    ML + E   +I  LG G 
Sbjct: 489 ELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASISDMLRNAECAAIIQVLGAGS 548

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+  FD++  RY K+++MTDADVDGAHIRTLLLT F+R M  L+  G ++   PPL+ I 
Sbjct: 549 GRS-FDLDAARYGKVVLMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAVPPLHRI- 606

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
               +   + + +   Y  +++  +      D  G   K+D++ +          + +  
Sbjct: 607 ---EVYGARGKGNEYIYTYSEAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQLAETT 663

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
            +     + +         E   E+   + S +A R +FI   +E
Sbjct: 664 MDPRHRTLRRVTAQHAEAAERVFELL--MGSDVAPRKDFIISGAE 706



 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 709 CNGDKIKITGPCSLLDTI--FSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
              + I       L  T+       K     +QRYKGLGEM+A QL ETT++P  R+L R
Sbjct: 614 KGNEYIYTYSEAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQLAETTMDPRHRTLRR 673

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFI 792
           V    A  A+ +F  LMG +V PR++FI
Sbjct: 674 VTAQHAEAAERVFELLMGSDVAPRKDFI 701


>gi|183597858|ref|ZP_02959351.1| hypothetical protein PROSTU_01192 [Providencia stuartii ATCC 25827]
 gi|188022618|gb|EDU60658.1| hypothetical protein PROSTU_01192 [Providencia stuartii ATCC 25827]
          Length = 631

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/563 (38%), Positives = 306/563 (54%), Gaps = 12/563 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+A++I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNAEAIEVLSGLEPVRRRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHAGHI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  D S  V D+GRG+P D+H E  +SA E+I+ +LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILYPDQSLEVIDDGRGMPVDIHPEMKVSAVELILGQLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G IY+++F NG     L V G  A  +TGT V F P    F 
Sbjct: 117 ISVVNALSKRIEVTVRRDGQIYQIAFENGDKVEELHVIGTCAKRNTGTSVHFWPDESYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I+  D+ +   +              +       P 
Sbjct: 177 NPRFSVSRLAHNLKAKAVLCPGVKITFKDQLNNTEQSWCYTDGLTDYLMEAVNGLELLPD 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  +       +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 QPFTGEFSGESEAAEW-ALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEFRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVAGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADCS +D  
Sbjct: 355 FSLWLNQNVQVAEQLAEMAIASAQ---RRMRAAKKVVRKKLTSGPALPGKLADCSSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L+SQE+  +  A+G 
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDISVAIGM 471

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
               +  D+++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +Y+  PPLY 
Sbjct: 472 DPDSE--DLSQLRYGKVCILADADSDGLHIATLLCALFVRHFPKLVKEGHVYMAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQ 566
           I  GK   Y  DE      L   
Sbjct: 530 IDLGKETFYALDESEKNAVLDRL 552



 Score = 90.8 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDE-VE 786
           ++G  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D    +   +   L+  +  E
Sbjct: 555 KRGKPNVQRFKGLGEMNPIQLRETTLDPNTRRLVQLTIDDENYKETVAVMDMLLAKKRSE 614

Query: 787 PRREFIQE 794
            RR ++QE
Sbjct: 615 DRRNWLQE 622


>gi|309812868|ref|ZP_07706600.1| DNA gyrase, B subunit, C-terminal domain protein [Dermacoccus sp.
           Ellin185]
 gi|308433146|gb|EFP57046.1| DNA gyrase, B subunit, C-terminal domain protein [Dermacoccus sp.
           Ellin185]
          Length = 723

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 238/609 (39%), Positives = 321/609 (52%), Gaps = 61/609 (10%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S +    +Y A  +Q+L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+L GY 
Sbjct: 16  SPSENQENYTARHLQVLEGLEAVRKRPGMYIGSTD-GRGLMHCLWEIIDNAVDEALGGYC 74

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V L  DGS  V DNGRGIP D+    G+S  EV+ T+LHAGGKF   SY  SGGLH
Sbjct: 75  DRIEVILLPDGSVEVRDNGRGIPVDVEPRTGLSGVEVVFTKLHAGGKFGGGSYTASGGLH 134

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------DNP---------- 158
           GVG SVVNALSS L + + R    Y MSF  G                +P          
Sbjct: 135 GVGASVVNALSSRLDVEVDRASKTYGMSFRRGEPGTFADGDSSDPLAKSPTNPFTPFESG 194

Query: 159 --LVVTGSAGN-DTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             L V G A    TG+ V +   + IF     F+YD L  R R+ SFL   + I + D+R
Sbjct: 195 SQLEVVGKARRGVTGSRVRYWADTTIFLKTAQFDYDQLIARARQTSFLVPGLTIIIRDER 254

Query: 215 -------SPEPREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGS---- 253
                     P E T  + GGI  F  Y                      + +       
Sbjct: 255 GLAGTPGENGPHEETFLHDGGISEFCEYLAPDAAVTGIWRLQGSGSFTETVPVLDESSGH 314

Query: 254 ------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                      +D+A+RW  GY   V  F N I    GGTH +G   AL +     +E +
Sbjct: 315 MTSQDVTRECGVDIALRWGTGYETKVRSFVNIIATPKGGTHNTGFEQALMKVFKKQLEVN 374

Query: 308 -FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K     V  DD   G T+V+++++ +P+F  QTKE L ++ VR++V   V   LSA
Sbjct: 375 ARKLKVGNDKVEKDDVLAGLTAVVTVRLAEPQFEGQTKEVLGTAAVRAIVSKVVEKELSA 434

Query: 367 WLEEHPLEAKI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L     + K     +++KV+     R +AR  ++  RRK  L+ +SLPGKL DC   D 
Sbjct: 435 HLTSTKRDDKAQAALLLEKVVAEMKSRISARAHKETQRRKTALESSSLPGKLKDCRSTDG 494

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           ++SELF+VEGDSA G+    R+ E QA+LP+RGKILNV++A    ML + E  ++I  +G
Sbjct: 495 ERSELFIVEGDSALGTGMAARNSEYQALLPIRGKILNVQKASVGDMLKNAECASIIQVVG 554

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G+  FD++ +RY KII+MTDADVDGAHIRTLLLT FFR M  L+  G +Y   PPL+
Sbjct: 555 GGSGRS-FDLDMVRYGKIILMTDADVDGAHIRTLLLTLFFRYMRPLVAAGRVYAAMPPLH 613

Query: 543 GITRGKSLQ 551
            +      +
Sbjct: 614 RLEVSAQGR 622



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLR 764
              G+ I       +  T+ +  +KG +    QRYKGLGEM+A QL ETT++P  R+L R
Sbjct: 622 RAKGEVIYTYSEDEMRATVAAWEKKGRTFKQPQRYKGLGEMDADQLAETTMDPRHRTLRR 681

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           V + DA  A+ +F  LMG EV PR++FI  ++    LD
Sbjct: 682 VTLKDAEMAEQVFDLLMGSEVAPRKDFIISSAND--LD 717


>gi|51597693|ref|YP_071884.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis IP
           32953]
 gi|186896834|ref|YP_001873946.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis PB1/+]
 gi|51590975|emb|CAH22633.1| topoisomerase IV subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|186699860|gb|ACC90489.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 631

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/649 (35%), Positives = 330/649 (50%), Gaps = 20/649 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTEQRWCYADGLTDYLMEAVNGFITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 APFVGSFAGDTEAIDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRDF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLN 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 LTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DEE     L               KG+   N L+         +  +  
Sbjct: 530 IDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLR-------ETTLDP 582

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                 +  I    I        D  +    +    N L    + +E  
Sbjct: 583 NTRRLVQLTISDDDIDHTLAV-MDMLLAKKRSEDRRNWLQEKGDTAEIE 630



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 103/290 (35%), Gaps = 56/290 (19%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
              N  + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 L--NLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKR--IFSNRIEENYL-----------TILSLICN 710
             +    +     ++  S      +Y +  I ++   +                 +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRL--MGD------EVEPRREFIQE 794
           TTL+P+TR L+++ I+D    DD+   L  M D        E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTISD----DDIDHTLAVM-DMLLAKKRSEDRRNWLQE 622


>gi|22127385|ref|NP_670808.1| DNA topoisomerase IV subunit B [Yersinia pestis KIM 10]
 gi|45442746|ref|NP_994285.1| DNA topoisomerase IV subunit B [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108810691|ref|YP_646458.1| DNA topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|145597760|ref|YP_001161836.1| DNA topoisomerase IV subunit B [Yersinia pestis Pestoides F]
 gi|150260300|ref|ZP_01917028.1| topoisomerase IV subunit B [Yersinia pestis CA88-4125]
 gi|153950532|ref|YP_001399571.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis IP
           31758]
 gi|162420269|ref|YP_001604896.1| DNA topoisomerase IV subunit B [Yersinia pestis Angola]
 gi|165924916|ref|ZP_02220748.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939896|ref|ZP_02228435.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008986|ref|ZP_02229884.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212022|ref|ZP_02238057.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167419067|ref|ZP_02310820.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425082|ref|ZP_02316835.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|170022910|ref|YP_001719415.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis YPIII]
 gi|218927861|ref|YP_002345736.1| DNA topoisomerase IV subunit B [Yersinia pestis CO92]
 gi|229837350|ref|ZP_04457513.1| topoisomerase IV subunit B [Yersinia pestis Pestoides A]
 gi|229840562|ref|ZP_04460721.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842890|ref|ZP_04463042.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900889|ref|ZP_04516013.1| topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|270487739|ref|ZP_06204813.1| DNA topoisomerase IV, B subunit [Yersinia pestis KIM D27]
 gi|294502735|ref|YP_003566797.1| DNA topoisomerase IV subunit B [Yersinia pestis Z176003]
 gi|21960472|gb|AAM87059.1|AE013954_3 DNA topoisomerase IV subunit B [Yersinia pestis KIM 10]
 gi|45437612|gb|AAS63162.1| topoisomerase IV subunit B [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774339|gb|ABG16858.1| DNA topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|115346472|emb|CAL19345.1| topoisomerase IV subunit B [Yersinia pestis CO92]
 gi|145209456|gb|ABP38863.1| DNA topoisomerase IV subunit B [Yersinia pestis Pestoides F]
 gi|149289708|gb|EDM39785.1| topoisomerase IV subunit B [Yersinia pestis CA88-4125]
 gi|152962027|gb|ABS49488.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162353084|gb|ABX87032.1| DNA topoisomerase IV, B subunit [Yersinia pestis Angola]
 gi|165912207|gb|EDR30845.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923116|gb|EDR40267.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992325|gb|EDR44626.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206768|gb|EDR51248.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963061|gb|EDR59082.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167055845|gb|EDR65626.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749444|gb|ACA66962.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis YPIII]
 gi|229682228|gb|EEO78320.1| topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|229690157|gb|EEO82214.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696928|gb|EEO86975.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229705473|gb|EEO91483.1| topoisomerase IV subunit B [Yersinia pestis Pestoides A]
 gi|262360767|gb|ACY57488.1| DNA topoisomerase IV subunit B [Yersinia pestis D106004]
 gi|262364712|gb|ACY61269.1| DNA topoisomerase IV subunit B [Yersinia pestis D182038]
 gi|270336243|gb|EFA47020.1| DNA topoisomerase IV, B subunit [Yersinia pestis KIM D27]
 gi|294353194|gb|ADE63535.1| DNA topoisomerase IV subunit B [Yersinia pestis Z176003]
 gi|320016769|gb|ADW00341.1| topoisomerase IV subunit B [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 631

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/649 (35%), Positives = 330/649 (50%), Gaps = 20/649 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTEQRWCYADGLTDYLMEAVNGFITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 APFVGSFAGDTEAIDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRDF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 LTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DEE     L               KG+   N L+         +  +  
Sbjct: 530 IDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLR-------ETTLDP 582

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                 +  I    I        D  +    +    N L    + +E  
Sbjct: 583 NTRRLVQLTISDDDIDHTLAV-MDMLLAKKRSEDRRNWLQEKGDTAEIE 630



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 102/290 (35%), Gaps = 56/290 (19%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--LTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKR--IFSNRIEENYL-----------TILSLICN 710
             +    +     ++  S      +Y +  I ++   +                 +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRL--MGD------EVEPRREFIQE 794
           TTL+P+TR L+++ I+D    DD+   L  M D        E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTISD----DDIDHTLAVM-DMLLAKKRSEDRRNWLQE 622


>gi|71894602|ref|YP_278710.1| topoisomerase IV subunit B [Mycoplasma synoviae 53]
 gi|71851390|gb|AAZ43999.1| topoisomerase IV subunit B [Mycoplasma synoviae 53]
          Length = 641

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 243/591 (41%), Positives = 350/591 (59%), Gaps = 13/591 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N+ Y A+SI+ LKGL+AV+KRP MYIG  D   GLHH++ E++DN+IDE+L GYA  I
Sbjct: 1   MPNNLYTAESIKKLKGLEAVRKRPGMYIGGAD-IHGLHHLVAEIVDNSIDEALAGYASEI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVTL+ D S +V DNGRGIP +  K E  +A E++ T LHAGGKF+  SYK SGGLHGVG
Sbjct: 60  TVTLHSDLSVSVFDNGRGIPVEKVKGEFKTAVELVFTELHAGGKFSSDSYKTSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALSS L++ + R    Y+ +FI   +              GT V F P    F  
Sbjct: 120 SSVVNALSSKLEVIVSRNDKSYKTAFIQDSIVEKTHEI-PLQFKRGTLVKFWPDYKFFKD 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
              N+ T+  RL+E SFL S+++I++ID+   +  +     + G+E F+ +++  K  + 
Sbjct: 179 ARLNFSTIAERLKESSFLVSNLKITIIDEI--KNHKEVYQSQKGLEEFLDFINGSKSVIS 236

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +     +  + NI ++ A +++D Y   +L F NN+   DGG+H +G++SA  + I  Y 
Sbjct: 237 KPVSYKETLK-NIEVEFAFQYSDDYSSIILSFVNNVKTIDGGSHEAGIKSAFVKVINDYA 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
            K    K  +     +D +EG + +LS+K+P+    F  QTK KL ++E R +VE     
Sbjct: 296 FKEAFIK-KQNIFDFEDIKEGLSLILSLKIPENLLEFVGQTKSKLGTTEARHIVEEIATK 354

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPG-KLADCSER 420
            L  W  ++  EAK IV K+ +A  +R   R+ R   R+ K +L    +   KL     +
Sbjct: 355 KLEIWFLDNKKEAKNIVNKIKNAYEIRLEERKRRQENRKSKNILKEKYILSDKLTPAMSK 414

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P + ELFLVEGDSAGGSAK GR+R  QAILPLRGK++N E+++   +L + EI T+I +
Sbjct: 415 NPLEKELFLVEGDSAGGSAKSGRNRNFQAILPLRGKVINSEKSKMLDILENTEIATIINS 474

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G G+D FD +K +Y+KIIIMTDAD DGAHI+ LLLTFF+R M  LI +G +YI   P
Sbjct: 475 IGAGFGKD-FDSSKAQYNKIIIMTDADTDGAHIQILLLTFFYRFMRKLIEDGKIYIALAP 533

Query: 541 LYGITRGKSLQ--YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           LY +T     Q  Y  D+  L+D L   + S          G ++ + L  
Sbjct: 534 LYKVTYKSKNQYYYAWDDSELKDILEKNAQSSYEIQRYKGLGEMNSDQLWE 584



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 101/262 (38%), Gaps = 2/262 (0%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I     ++  + +   E+      L E+  L       +SKN L   +           
Sbjct: 373 KIKNAYEIRLEERKRRQENRKSKNILKEKYILSDKLTPAMSKNPLEKELFLVEGDSAGGS 432

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662
                +        +   V N E  + +++   +++A  +N I     K +  S    + 
Sbjct: 433 AKSGRNRNFQAILPLRGKVINSEKSKMLDILENTEIATIINSIGAGFGKDFDSSKAQYNK 492

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPC 720
           ++           +      F +    K I   +I      +  +               
Sbjct: 493 IIIMTDADTDGAHIQILLLTFFYRFMRKLIEDGKIYIALAPLYKVTYKSKNQYYYAWDDS 552

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            L D +    +    +QRYKGLGEMN+ QLWETT+NP+TR+L++  I+DA  A+   S L
Sbjct: 553 ELKDILEKNAQSSYEIQRYKGLGEMNSDQLWETTMNPETRTLIKATISDAILAEKRVSTL 612

Query: 781 MGDEVEPRREFIQENSLPSALD 802
           MGD V+ R+E+I  N   S  D
Sbjct: 613 MGDNVKIRKEWIDNNVNFSNDD 634


>gi|92114662|ref|YP_574590.1| DNA topoisomerase IV subunit B [Chromohalobacter salexigens DSM
           3043]
 gi|91797752|gb|ABE59891.1| DNA topoisomerase IV subunit B [Chromohalobacter salexigens DSM
           3043]
          Length = 626

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 238/583 (40%), Positives = 325/583 (55%), Gaps = 15/583 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A SI++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I V 
Sbjct: 2   TQYSASSIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHASHIRVR 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DG   VSD+GRG+P D+H E G+S  E+I+TRLHAGGKF+Q SY+ SGGLHGVGVSV
Sbjct: 58  LHDDGGIEVSDDGRGMPIDMHPEHGVSGVELILTRLHAGGKFSQSSYRFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L++ + R+G+ + M+F +G     L V G+      GT V F P    F    
Sbjct: 118 VNALSRRLEIEVCRDGDRHGMAFAHGDKVEDLTVIGTCSKKAKGTVVRFWPDESYFDSPR 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
                L+H LR  + L   ++++LI+    E       Y  G+  +++      + L  S
Sbjct: 178 LALPRLKHLLRAKAVLCPGLEVTLIEADGTES---VWQYADGLRDYLAQATDDVETLPAS 234

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P       ++  +D A++W  +G       + N IP   GGTH++GLRS L   +  + E
Sbjct: 235 PFLGHFEDEDQGVDWAIQWLPEGGELLQESYVNLIPTPLGGTHVNGLRSGLLDALREFCE 294

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    + GDD  E  + VLS+K+ DP+F+ QTKE+L S  V   V   V D  S
Sbjct: 295 YRSLLPRG-VKLTGDDLWERVSFVLSVKLLDPQFAGQTKERLSSRVVAGFVSGVVKDAFS 353

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL  H  +A+ + + V++A+  R  + +      RK V    +LPGKLADCS +DP  S
Sbjct: 354 LWLNHHVDQAEALAELVINAAQRRQKSAKK---VARKKVTSGPALPGKLADCSGQDPAAS 410

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN        +  SQE+  +  A+G   
Sbjct: 411 ELFLVEGDSAGGSAKQARDRETQAILPLRGKILNTWEVEAHDIYGSQEVHDIAVAIGMDP 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D  D++KLRYHKI I+ DAD DG HI TLL   F R  P+L+  G +++  PPLY I 
Sbjct: 471 GSD--DLSKLRYHKICILADADSDGLHIATLLCALFVRHFPALVDAGHVFVAMPPLYRID 528

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            GK + Y  DE      L               KG+   + L+
Sbjct: 529 LGKEVHYALDESEKTAILKRLEGKRGTPNVQRFKGLGEMSPLQ 571



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 14/82 (17%)

Query: 729 IGRKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM-----G 782
            G++G  ++QR+KGLGEM+  QL ETT+  DTR L+++ +T      ++   L+     G
Sbjct: 550 EGKRGTPNVQRFKGLGEMSPLQLRETTMAADTRRLVQLTLTVGDGTREMMDMLLAKKRAG 609

Query: 783 DEVEPRREFIQENSLPSAL-DI 803
           D    R+ ++++      L DI
Sbjct: 610 D----RKNWLED---YGNLADI 624


>gi|262377153|ref|ZP_06070378.1| DNA topoisomerase IV, B subunit [Acinetobacter lwoffii SH145]
 gi|262307891|gb|EEY89029.1| DNA topoisomerase IV, B subunit [Acinetobacter lwoffii SH145]
          Length = 626

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/641 (34%), Positives = 342/641 (53%), Gaps = 20/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+A+ ITVT
Sbjct: 2   SQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHANKITVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+IMT+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIIMTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F NG    PL V    +    +GT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYKMAFENGEPVAPLEVLAGKAPKRVSGTTVQFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + +QI+ +D+ + E        + G+  ++      ++ +  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLQINYVDQINDEKITWQF--ENGLVDYLMDELEDREIIPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  +  S + A+ WN +G       + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVATGDAERASAEFAICWNVEGGESVQESYVNLIPTAQGGTHVNGLRSGVTDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E   +V++   D  
Sbjct: 296 ELRNLLPRN-MKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAAGIVQNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A  + +     S      + A+    RK ++   +LPGKL+DC   D  +
Sbjct: 355 ALWLNQNSDIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVAGPTLPGKLSDCVGHDLDQ 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHNIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY K+ I+ DAD DG HI TLL   F +  P+L+  G L++  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKVCILADADSDGLHIATLLCALFVKHFPTLVEEGHLFVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
              K + Y  DE+ L   L                G ++ + LR        +D   +  
Sbjct: 530 DDNKDVHYALDEDELNSILKKCKTKNPQITRFKGLGEMNASQLRET-----TLDPNTRRL 584

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
                      A +      +           +  N  + +
Sbjct: 585 VQLDLDDAHHTAGLLDKLLAKKRASDRKDWLEQKGNLADLV 625



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 720 CSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
              L++I    + K   + R+KGLGEMNASQL ETTL+P+TR L+++ + DA
Sbjct: 541 EDELNSILKKCKTKNPQITRFKGLGEMNASQLRETTLDPNTRRLVQLDLDDA 592


>gi|85058249|ref|YP_453951.1| DNA topoisomerase IV subunit B [Sodalis glossinidius str.
           'morsitans']
 gi|84778769|dbj|BAE73546.1| topoisomerase IV subunit B [Sodalis glossinidius str. 'morsitans']
          Length = 631

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/649 (34%), Positives = 336/649 (51%), Gaps = 20/649 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTLRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V+D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHPDQSLEVTDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ ++R GN+Y ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSTRVEVTVRRNGNVYRIAFENGDKVEDLSVVGTCPKRNTGTSVHFWPDEHFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLTHLLKAKAVLCPGVEIVFQDRVNNTEQRWCYEAGLTDYLNEAINGLITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                 + G  + +   + +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 TPFVGAVSGDTETVDW-VLLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E  T VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSADDIWERCTYVLSVKMQDPQFAGQTKERLSSRQSAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
              WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FILWLNQNIQVAEQLAELAIASAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLV 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAL 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  PPLY 
Sbjct: 470 GIDPDSNDLSQLRYGKICILADADSDGLHIATLLCALFMQHFRKLVEEGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DEE     L      +        KG+   N L+         +  +  
Sbjct: 530 IDLGKEVYYALDEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPLQLR-------ETTLDP 582

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                 +  +    +        D  +    +    N L    +++E  
Sbjct: 583 NTRRLVQLTVGADDVQQTL-AMMDMLLAKKRSEDRRNWLQEKGDEAEIE 630



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VE 786
           +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ +   D  Q   +   L+  +  E
Sbjct: 555 KKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTVGADDVQQTLAMMDMLLAKKRSE 614

Query: 787 PRREFIQE 794
            RR ++QE
Sbjct: 615 DRRNWLQE 622


>gi|261344789|ref|ZP_05972433.1| hypothetical protein PROVRUST_06054 [Providencia rustigianii DSM
           4541]
 gi|282567234|gb|EFB72769.1| DNA topoisomerase IV, B subunit [Providencia rustigianii DSM 4541]
          Length = 631

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/563 (38%), Positives = 306/563 (54%), Gaps = 12/563 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+A+ I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNAEDIEVLSGLEPVRRRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHAGHI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  D S  V DNGRG+P D+H E  +SA E+I+ +LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILYPDQSLEVIDNGRGMPVDIHPEMKVSAVELILGQLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G +Y+++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRIEVTVRRDGQVYQIAFENGDKVEDLHVIGTCGKRNTGTSVHFWPDVSYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   VQI+  D  +   +              S       P+
Sbjct: 177 SPRFSVSRLTHNLKAKAVLCPGVQITFKDLLNETEQSWCYSDGLTDYLMESVDGYETLPV 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                 + G  +       +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 KPFTGELSGEVEAAQW-ALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEFRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADCS +D  
Sbjct: 355 FSLWLNQNVQVAEQLAEMAISSAQ---RRLRASKKVVRKKLTSGPALPGKLADCSSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L+SQE+  +  A+G 
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSSDEVLASQEVHDISVAIGM 471

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
               +  D+++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +Y+  PPLY 
Sbjct: 472 DPDSE--DMSQLRYGKVCILADADSDGLHIATLLCALFVRHFPKLVREGHVYMAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQ 566
           I  GK   Y  DE      L   
Sbjct: 530 IDLGKETHYALDESEKNAVLDRL 552



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLMGDE-VE 786
           +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D   ++   +   L+  +  E
Sbjct: 555 KKGKPNVQRFKGLGEMNPPQLRETTLDPNTRRLVQLTIDDDNYTETMSMMDMLLAKKRSE 614

Query: 787 PRREFIQE 794
            RR ++QE
Sbjct: 615 DRRNWLQE 622


>gi|99034415|ref|ZP_01314424.1| hypothetical protein Wendoof_01000773 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 605

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 271/616 (43%), Positives = 385/616 (62%), Gaps = 19/616 (3%)

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV-----SYLDRHKKPLMQSPIRI 250
           +REL+FLNS++ I+L D R+    E         +               K  +     +
Sbjct: 1   MRELAFLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNKTHVTKIASM 60

Query: 251 QG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
           +G      IS++++M WND Y+EN+LCFTNNI Q+DGGTHL+G RSALTR I +Y     
Sbjct: 61  KGDAEDLGISLEISMEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSALTRCINTYATNEG 120

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             KK K ++ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VVES V+D LS  L
Sbjct: 121 FLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESIVSDKLSTIL 180

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           E  P  A  IV++ + ++  R+AAR+AR+L + K  +DIA+LPGKLADC E+ P+ SELF
Sbjct: 181 ETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIATLPGKLADCQEKAPELSELF 240

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEG+SAGG+AKQGR+R+ QA+L LRGKILNVER   D++ SS EIG+LITA+G GIG +
Sbjct: 241 IVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSE 300

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI K RYHKIIIMTDADVDG+HIRTL+LTFFFR M  +I  G+LYI +PPLY +T+  
Sbjct: 301 HFDIEKARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNA 360

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
              Y+KD+E+ E+Y+IN ++         S      N+LR  ++  +    + K++    
Sbjct: 361 KDTYIKDDETFEEYIINSAVKRLTL----SGTATEFNNLRLILNKCVSTSNISKNYDREI 416

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIA 668
            +  +E  +I         ++  +S A ++   L  +  +            +I + ++ 
Sbjct: 417 PQNLLESLLIL-------SKKNALSSADEILKYLKLMYSEYTWEVEIKDEEKEIHISKLF 469

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
           +G+ ++++   S +     +      + I   +     L     +I+IT P +L   I  
Sbjct: 470 QGLADKYIFALSMLEGKDMQNILSLLDGISNLFNGDSFLKSQETEIRITSPSTLAKIIMD 529

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788
            G+KG+++QR+KGLGEMNA QLW+TTLNP+ R+LL+V+I D  +AD +FS LMGD VEPR
Sbjct: 530 YGKKGLTLQRFKGLGEMNADQLWDTTLNPEARTLLKVEIKDYEEADSIFSILMGDIVEPR 589

Query: 789 REFIQENSLPS-ALDI 803
           R+FI  N+L    +DI
Sbjct: 590 RDFINSNALNVHDVDI 605


>gi|253991001|ref|YP_003042357.1| DNA topoisomerase IV subunit B [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782451|emb|CAQ85615.1| topoisomerase IV subunit B [Photorhabdus asymbiotica]
          Length = 631

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/649 (35%), Positives = 337/649 (51%), Gaps = 20/649 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKHI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+SA E+I++RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHSDQSLEVIDDGRGMPVDIHPEEGVSAVELILSRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R   +Y+++F NG     L V GS    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRIEVTVRRSSQVYQIAFENGDKVQELAVIGSCGKRNTGTSVHFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   ++             +       P 
Sbjct: 177 SPRFSASRLTHLLKAKAVLCPGVEIVFKDKINDTEQKWCYADGLTDYLMAAVNGLMTLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + +     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 APFVGAFSGETEAVDW-ALLWLPEGGELLAESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEFRNILPRG-VKLSADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  EA+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQEAEQLAELAIASAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLN 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 FTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSNDLSQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKNGHVYMAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DEE     L   S           KG+   N L+         +  +  
Sbjct: 530 IDLGKEVYYALDEEEKSAVLDRLSRKRGKPNVQRFKGLGEMNPLQLR-------ETTLDP 582

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                 +  I+       F+   D  +    +    N L    +  E  
Sbjct: 583 NTRRLVQLTIDDENYQETFSM-MDMLLAKKRSEDRRNWLQEKGDTVEIE 630



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDE-VE 786
           ++G  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D    +   +   L+  +  E
Sbjct: 555 KRGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTIDDENYQETFSMMDMLLAKKRSE 614

Query: 787 PRREFIQE 794
            RR ++QE
Sbjct: 615 DRRNWLQE 622


>gi|68138636|gb|AAY85994.1| GyrB [Burkholderia multivorans]
          Length = 631

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 274/635 (43%), Positives = 389/635 (61%), Gaps = 20/635 (3%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTG 170
           VGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G    + G
Sbjct: 1   VGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIGDTE-NRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++
Sbjct: 60  TEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+
Sbjct: 118 GFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLT 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSS
Sbjct: 178 GLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD   L
Sbjct: 238 EVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LS
Sbjct: 298 PGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           S++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP +I 
Sbjct: 358 SEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMIE 417

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            G++YI +PPLY +  GK  +Y+KD+  L  +++  +L     L  ++   I+ + L   
Sbjct: 418 RGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQGSELLPSENATPITGDALGEL 477

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
               L    +I+     +D   +E  +     +  S +    + A  L   L+    K+E
Sbjct: 478 ARSYLMSQSVIERLSRLYDPAALEAIMDGVSIDL-SSEASTEASAKALHAALHDDTLKNE 536

Query: 651 KS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706
                 +        + V+R   G     V++     +   +     +   E        
Sbjct: 537 VRVVPAYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVNTAKTFEGLIQAGAV 596

Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +      + +T   +    + +   + +S QRYKG
Sbjct: 597 IKRGERSMAVTDFKNAKKWLLADAERNVSKQRYKG 631


>gi|159037300|ref|YP_001536553.1| DNA gyrase subunit B [Salinispora arenicola CNS-205]
 gi|157916135|gb|ABV97562.1| DNA gyrase subunit B domain protein [Salinispora arenicola CNS-205]
          Length = 730

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 246/676 (36%), Positives = 347/676 (51%), Gaps = 41/676 (6%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y+AD +  L+GLDAV+KRP MYIG TD   G+ H++ E+LDN+ DE + G+A  I VTL+
Sbjct: 54  YEADDLTHLEGLDAVRKRPGMYIGSTDS-RGVGHLVNEILDNSTDEGVAGHATSIEVTLH 112

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS  V D+GRGIPTD+H + GIS  E+++TRLHAGGKF    YK SGGLHGVG S VN
Sbjct: 113 ADGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 172

Query: 130 ALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVVTG--SAGNDTGTEV 173
           ALS    + ++R G I+ MSF +G+      D P         L V G       TGT +
Sbjct: 173 ALSRRFDVTVRRGGKIHTMSFRHGVPGTFDGDGPEAPFRAGPGLQVIGAVKRRQRTGTSI 232

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            +      F V    + + ++ +LR  +FL   V   L D    EP E    Y  G+   
Sbjct: 233 RYWYDPRYFEVGATLDAEAVRMKLRNTAFLVPGVSYLLRDHTGAEPVEERFHYPNGLTDM 292

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNI------------------SIDLAMRWNDGYHENVL 274
           V +L       +   + + G                        ++LA RW  GY   V 
Sbjct: 293 VDFLAPAGDRPVSGILVVSGEGTYRENAADANGVMQANVPRRAEVELAFRWGTGYERTVE 352

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEK-SFGSKKDKRSVIGDDCREGFTSVLSIK 333
           CFTN I    GGTH  G   ALTR +   V       K  +     DD  EG T+V+ ++
Sbjct: 353 CFTNTIRNAHGGTHRKGFERALTRTLADAVRNARGLLKAKEDPPTLDDILEGMTAVVHVR 412

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE--AKIIVKKVLDASMVRDA 391
           +P+P+F+SQTK++L ++ +  V++  V   L  WLEE   +  A+ +++K+ DA+ VR  
Sbjct: 413 IPEPQFTSQTKDELSTAGITKVLQRLVEQHLKVWLEERRTKAEARTVLQKIADAARVRLT 472

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
            ++ +D  RRK  L+ AS+P KL DC      +SE+F+VEGDSA G+A+  RS E QA+L
Sbjct: 473 QKQQKDAARRKTALEGASMPAKLVDCRSTGVARSEMFIVEGDSALGTARLARSSEYQALL 532

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           P+RGKILNV++A   ++L + E   ++  LG G G+  FD++ +RY +++IM DADVDGA
Sbjct: 533 PIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRT-FDLSAVRYGRVLIMADADVDGA 591

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSE 570
           HIRTLL+T F R M  LI  G LY   PPL+ I TRG++ Q V      E     + L +
Sbjct: 592 HIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTVYTYTQEEMEATVRRLEK 651

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
             +               N  +                     E A            E 
Sbjct: 652 AGKQIVTPIPRFKGLGEMNADELWETTMNPAGRAVRRITLEDAEAAEQVLELLMGEKVEP 711

Query: 631 NVSLASKLANRLNFIA 646
             +     A+R++  A
Sbjct: 712 RRNWLIASADRVDREA 727



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 9/120 (7%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICNGDK-IKITGPCS-----LLDTIFSIGRK 732
            + +  ++Y R  I + R+      +  +   G     +           +  +   G++
Sbjct: 596 LLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTVYTYTQEEMEATVRRLEKAGKQ 655

Query: 733 GIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
            ++ + R+KGLGEMNA +LWETT+NP  R++ R+ + DA  A+ +   LMG++VEPRR +
Sbjct: 656 IVTPIPRFKGLGEMNADELWETTMNPAGRAVRRITLEDAEAAEQVLELLMGEKVEPRRNW 715


>gi|119470529|ref|ZP_01613232.1| DNA topoisomerase IV subunit B [Alteromonadales bacterium TW-7]
 gi|119446230|gb|EAW27507.1| DNA topoisomerase IV subunit B [Alteromonadales bacterium TW-7]
          Length = 629

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/638 (35%), Positives = 339/638 (53%), Gaps = 15/638 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + + +Y+A++I++L GLD VK+RP MY   TD     +H+  EV+DN++DE++ G+A  I
Sbjct: 1   MSDQNYNAEAIEVLNGLDPVKRRPGMY---TDTVRP-NHLGQEVIDNSVDEAMAGHATKI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  VSD+GRG+P D+H EEGI   E+I T+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHEDNSLEVSDDGRGMPIDIHPEEGIPGIELIFTKLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ ++R+   Y M+F NG     L V G+    +TGT V F   +  F 
Sbjct: 117 ISVVNALSTRVEVTVRRDAQQYRMAFENGDKVEDLNVIGTVGKRNTGTTVRFWADASYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++   L H L+  + L   ++I  ++K++ E +E       G++ ++    +  + L
Sbjct: 177 SANYSITKLNHLLKAKAVLCPGLRIKFVNKQTKETQEWFYET--GLKDYLIEAVKGFETL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            Q P   +       +D A+ W  +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PQDPFVGEFKSAIEGVDWAVVWLPEGGESIAESYVNLIPTAQGGTHVNGLRQGLLEAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E  + VLS+KM DP+F+ QTKEKL S    ++V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRTCAALVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL EH   A+++ +  +  +  R    +A     RK V    +LPGKL DCS  D 
Sbjct: 354 AFSLWLNEHTDTAELLAELCISNAQSRL---KAAKKVVRKRVTAGPALPGKLTDCSAADN 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  ++ 
Sbjct: 411 DRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY+KI I+ DAD DG HI TLL   F R  P L+  G +Y+  PPL+
Sbjct: 469 LGIDPDSADMSGLRYNKICILADADSDGLHIATLLCALFVRHFPQLVKTGHVYVAMPPLF 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DE+     L      ++       +           + +   +D   +
Sbjct: 529 RIDIGKEVYYALDEDEKTSILARIEAEKKRGKVNVQRFKGLGEMNPLQLRE-TTMDPNTR 587

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                     ++   +  +   +              N
Sbjct: 588 RLVQLTLDEEVQTMEMMDMLLAKKRSPDRRQWLEDHGN 625



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 721 SLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           S+L  I +  ++G +++QR+KGLGEMN  QL ETT++P+TR L+++ + +  Q  ++   
Sbjct: 547 SILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTLDEEVQTMEMMDM 606

Query: 780 LMGDEVEP-RREFIQENSLPS 799
           L+  +  P RR++++++   +
Sbjct: 607 LLAKKRSPDRRQWLEDHGNKA 627


>gi|89092022|ref|ZP_01164977.1| DNA topoisomerase IV subunit B [Oceanospirillum sp. MED92]
 gi|89083757|gb|EAR62974.1| DNA topoisomerase IV subunit B [Oceanospirillum sp. MED92]
          Length = 630

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/567 (37%), Positives = 316/567 (55%), Gaps = 12/567 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y+A SI++L GLD V++RP MY  +TD  +   H+  EV+DN++DE+L G+A  I V
Sbjct: 2   SKQYNAGSIEVLSGLDPVRRRPGMYT-ETDRPN---HLAQEVIDNSVDEALAGHAKQIDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            LN D S +V+D+GRG+P D+H E+G+S  E+I+ +LHAGGKFN  +Y  SGGLHGVGVS
Sbjct: 58  VLNKDQSLSVTDDGRGMPVDIHPEQGVSGVELILCKLHAGGKFNNDNYNYSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  L+++++R+  +Y + F +G   + L V  +    +TGT V FLP    F   
Sbjct: 118 VVNALSKLLEVQVRRDSQVYRIGFADGEKVSDLEVIDTCGKRNTGTTVRFLPDPQYFDTH 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L   ++++  D    +  +   +Y+ G+  ++    +  + L  
Sbjct: 178 KFSVSRLKHNLRAKAVLCPGLKVTFTDLTGAKREKEEWYYEDGLVDYLKGTTQVFEVLPA 237

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P       +  +++ A++W  +G       + N IP   GGTH++GLR+ L   +  + 
Sbjct: 238 EPFSGSLQGELDAVEWAVQWLPEGGEMTCESYVNLIPTAQGGTHVNGLRTGLLEAMREFC 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +    VLS KM DP+F+ QTKE+L S E+ + +   + D  
Sbjct: 298 EFRNLLPRG-VKLTADDVWDKCCYVLSAKMQDPQFAGQTKERLSSREIAAFISGTIKDAF 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  H  E + + + ++  +       R+     RK V    +LPGKLADCS  D  +
Sbjct: 357 SLWLNRHVEEGEQLAEVIISNAQ---RRMRSNKKVVRKKVTQGPALPGKLADCSGGDAMQ 413

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L SQEI  +  A+G  
Sbjct: 414 SELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDPTEVLGSQEIHDISVAIGVE 473

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              ++F    LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY I
Sbjct: 474 PASENF--EGLRYGKICILADADSDGLHIATLLCALFVRHFKPLVTAGHVYVAMPPLYRI 531

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE 571
              K + Y  D+   +  +       +
Sbjct: 532 DVAKEVFYALDDAEKDGIIERIKADRK 558



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 15/98 (15%)

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           D  +  G    +       +  I +QR+KGLGEMN  QL ETT++PDTR L+++ +    
Sbjct: 542 DDAEKDGIIERIKADRKNAK--IGVQRFKGLGEMNPLQLRETTMSPDTRRLVQLTVEPGD 599

Query: 772 QADDLFSRLM-----GDEVEPRREFIQENSLPSAL-DI 803
             +++   L+     GD    R++++Q       L D+
Sbjct: 600 GTNEVMDMLLAKKRSGD----RKDWLQS---KGNLADV 630


>gi|167470305|ref|ZP_02335009.1| DNA topoisomerase IV, B subunit [Yersinia pestis FV-1]
          Length = 593

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/585 (38%), Positives = 317/585 (54%), Gaps = 12/585 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTEQRWCYADGLTDYLMEAVNGFITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 APFVGSFAGDTEAIDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRDF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 LTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  GK + Y  DEE     L               KG+   N L+
Sbjct: 530 IDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQ 574



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 87/255 (34%), Gaps = 43/255 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--LTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKR--IFSNRIEENYL-----------TILSLICN 710
             +    +     ++  S      +Y +  I ++   +                 +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI 767
           TTL+P+TR L+++ I
Sbjct: 578 TTLDPNTRRLVQLTI 592


>gi|317493396|ref|ZP_07951817.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918339|gb|EFV39677.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 631

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 225/585 (38%), Positives = 321/585 (54%), Gaps = 12/585 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+ADSI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNADSIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHASRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILYPDQSLEVIDDGRGMPVDIHPEEGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G +Y+M+F NG     L VTG+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDGQVYQMAFENGDKVEDLHVTGTCGKRNTGTSVHFWPDEQFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +              +       P 
Sbjct: 177 SPKFSVSRLNHLLKAKAVLCPGVEIVFKDKLNNTEQRWCYQDGLTDYLMEAVNGLITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + +     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 QAFTGSFSGDTEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V + V D 
Sbjct: 296 CEFRNLLPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSAIVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSVWLNQNVQVAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   SL+  G +Y+  PPL+ 
Sbjct: 470 GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFQSLVRGGHVYVAMPPLFR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  GK + Y  DEE     L      +        KG+   N L+
Sbjct: 530 IDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQ 574



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 104/295 (35%), Gaps = 48/295 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +     ++     + + L   ++S        +K V+ K             D   +D
Sbjct: 350 IVKDAFSVWLNQNVQVAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LSR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +  G
Sbjct: 458 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFQSLVRG 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLFRIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKITDASQADD---LFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I D    D    +   L+  +  E RR ++QE    + LD+
Sbjct: 578 TTLDPNTRRLVQLTIDDTDV-DQTMAVMDMLLAKKRSEDRRNWLQEKGDLADLDV 631


>gi|315127627|ref|YP_004069630.1| DNA topoisomerase IV subunit B [Pseudoalteromonas sp. SM9913]
 gi|315016141|gb|ADT69479.1| DNA topoisomerase IV subunit B [Pseudoalteromonas sp. SM9913]
          Length = 629

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 225/638 (35%), Positives = 335/638 (52%), Gaps = 15/638 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y+A++I++L GL+ VK+RP MY   TD     +H+  EV+DN++DE++ G+A  I
Sbjct: 1   MTQQNYNAEAIEVLNGLEPVKRRPGMY---TDTSRP-NHLGQEVIDNSVDEAMAGHATRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  VSD+GRG+P D+H EEGI   E+I T+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHEDNSLEVSDDGRGMPIDIHPEEGIPGVELIFTKLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ ++R+   + M+F +G     L V GS    +TGT V F P +  F 
Sbjct: 117 ISVVNALSTRVEVTVRRDAQQFRMAFEHGDKVEDLNVIGSVGKRNTGTTVRFWPDTSYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+   L H L+  + L   ++I  ++K++ E +E       G++ ++    +  + L
Sbjct: 177 SANFSLTKLNHLLKAKAVLCPGLRIKFVNKQTKETQEWFYET--GLKDYLVEAVKGYEIL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P   + S      D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PKDPFVGEFSSSIEGADWAVVWMPEGGESTAESYVNLIPTAQGGTHVNGLRQGLLEAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E  + VLS+KM DP+F+ QTKEKL S    + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRSCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL EH   A+++ +  +  +       RA     RK V    +LPGKL DCS  D 
Sbjct: 354 AFSLWLNEHTDTAELLSELCISNAQ---RRLRAAKKVVRKRVTSGPALPGKLTDCSAADN 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  ++ 
Sbjct: 411 DRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY+KI I+ DAD DG HI TLL   F R  P L+  G +Y+  PPL+
Sbjct: 469 LGIDPDSSDLSGLRYNKICILADADSDGLHIATLLCALFVRHFPQLVKTGHVYVAMPPLF 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DE+     L      ++       +           + +   +D   +
Sbjct: 529 RIDIGKDVYYALDEDEKTGILARIEAEKKRGKVNVQRFKGLGEMNPLQLRE-TTMDPNTR 587

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                      +   +  +   +              N
Sbjct: 588 RLVQLTLDEEEQTMEMMDMLLAKKRSSDRRQWLEDHGN 625



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L  I +  ++G +++QR+KGLGEMN  QL ETT++P+TR L+++ + +  Q  ++   L
Sbjct: 548 ILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTLDEEEQTMEMMDML 607

Query: 781 MGDE-VEPRREFIQENSLPS 799
           +  +    RR++++++   +
Sbjct: 608 LAKKRSSDRRQWLEDHGNKA 627


>gi|37527805|ref|NP_931150.1| DNA topoisomerase IV subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787241|emb|CAE16322.1| topoisomerase IV subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 631

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/585 (38%), Positives = 326/585 (55%), Gaps = 12/585 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKHI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+SA E+I++RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHSDQSLEVIDDGRGMPVDIHPEEGVSAVELILSRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY+++F NG     L V GS    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRIEVTVRRDSQIYQIAFENGDKVQELTVIGSCGKRNTGTGVHFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   ++             +       P 
Sbjct: 177 SPRFSVSRLTHLLKAKAVLCPGVEIVFKDKINGTEQKWCYADGLTDYLMAAVNGLTTLPA 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G+ + +     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 APFVGTFSGATEAVDW-ALLWLPEGGELLAESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +  T VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEFRNILPRG-VKLAADDIWDRCTYVLSVKMQDPQFAGQTKERLSSRQSAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  EA+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQEAEQLAELAIASAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLN 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 FTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSHDLSQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKNGHVYMAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  GK + Y  DEE     L   S           KG+   N ++
Sbjct: 530 IDLGKEVYYALDEEEKSAVLDRLSRKRGKPNVQRFKGLGEMNPMQ 574



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDE-VE 786
           ++G  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D    +   +   L+  +  E
Sbjct: 555 KRGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDENYQETFSMMDMLLAKKRSE 614

Query: 787 PRREFIQE 794
            RR ++QE
Sbjct: 615 DRRNWLQE 622


>gi|223997382|ref|XP_002288364.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220975472|gb|EED93800.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 678

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 253/623 (40%), Positives = 349/623 (56%), Gaps = 36/623 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S    N +Y A+ I +L GL+ V+KRP MYIG T G  GLHH++YEVLDN++DE+L G+A
Sbjct: 3   STEAINGAYSANQITVLSGLEPVRKRPGMYIGST-GPDGLHHLVYEVLDNSVDEALAGHA 61

Query: 62  DIITVTLNM----DGS---------CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
            +I++ L+     D S         CT++D+GRGIPTDLH    ISA E ++T LHAGGK
Sbjct: 62  SMISMVLHDAPGVDDSGENEKVGNCCTITDDGRGIPTDLHPTTKISALETVLTVLHAGGK 121

Query: 109 FNQK----SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD---NPLVV 161
           F+       YKVSGGLHGVG+SVVNALS ++++R+ R     E    N         LV 
Sbjct: 122 FDNSQQGSGYKVSGGLHGVGISVVNALSEFVEVRVDRGSKSAENDIENTSSVAYKTSLVQ 181

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL------QHRLRELSFLNSSVQISLIDKR- 214
              +    GT VTFLP   +F   +   D          R+ E+++LN+ + ++L DKR 
Sbjct: 182 KLYSQRKAGTTVTFLPDITVFKGVNGKPDITFDASRLASRMDEIAYLNAGLVLTLQDKRI 241

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHE 271
                  + +        A           +  S       +  I+ID A+R++ + Y E
Sbjct: 242 LSGRSKVDKSNIVTVFHHADDGATLLFHGTITPSSSSPGIQQLPITIDAALRYSANTYSE 301

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+L F NNI  KDGG+H+ GL+S LTR +     +    K    ++ GD  REG T+++S
Sbjct: 302 NILSFVNNIRTKDGGSHVEGLKSCLTRTLNQSARRLGKLKDGDSNLSGDFVREGLTAIIS 361

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           + + +P F  QTK +L + EVR  VE+ +   L+ + + +P    II +    A     A
Sbjct: 362 VSVSEPEFEGQTKGRLGNPEVRPAVETALGAELTKFFDFNPDILNIIYENASRAQAAALA 421

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A+ AR++ RRK +L    LPGKLADC+ RD  ++ELF+VEGDSA GSAKQGR R  QAIL
Sbjct: 422 AKAAREVVRRKTLLQSTVLPGKLADCASRDLTETELFIVEGDSAAGSAKQGRDRRTQAIL 481

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGKILN+ERA  +++  + E+  LI+A G GI     +   LRY KI+IMTDADVDGA
Sbjct: 482 PLRGKILNIERAAPERIYQNSELQGLISACGLGIKGAELEEASLRYGKIVIMTDADVDGA 541

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLIN-Q 566
           HIR LLLTFFFR    L+  G+LYI +PPLY I     R +  +Y   +E  + YL    
Sbjct: 542 HIRVLLLTFFFRYQRELVEKGYLYIAQPPLYKIVTGTGRARKEKYTFSDEEKDAYLREDL 601

Query: 567 SLSEEIELFCDSKGVISKNDLRN 589
           S    +       G +    L  
Sbjct: 602 SEGNVMIQRFKGLGEMMPKQLWE 624



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             +    + +QR+KGLGEM   QLWETT++PD R+LL+V + D + AD     LMGD V 
Sbjct: 599 EDLSEGNVMIQRFKGLGEMMPKQLWETTMDPDGRTLLQVSVNDCALADQTLDILMGDAVA 658

Query: 787 PRREFIQENS--LP-SALDI 803
           PRR FI E++  L    LD+
Sbjct: 659 PRRNFISEHAESLKLGDLDV 678


>gi|197286191|ref|YP_002152063.1| DNA topoisomerase IV subunit B [Proteus mirabilis HI4320]
 gi|227357310|ref|ZP_03841667.1| DNA topoisomerase IV subunit B [Proteus mirabilis ATCC 29906]
 gi|194683678|emb|CAR44632.1| DNA topoisomerase IV subunit B [Proteus mirabilis HI4320]
 gi|227162573|gb|EEI47562.1| DNA topoisomerase IV subunit B [Proteus mirabilis ATCC 29906]
          Length = 631

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 235/650 (36%), Positives = 342/650 (52%), Gaps = 22/650 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+A  I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNAKDIEVLNGLEPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHATKV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  D S  V DNGRG+P D+H E  +SA E+I+  LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILYADQSIEVIDNGRGMPVDIHPELKVSAIELILAHLHAGGKFSNKNYQYSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++REG IY+++F NG     L   G  A  DTGT V F P S  F 
Sbjct: 117 ISVVNALSKRIEVTVRREGKIYQIAFENGDKVEELHQIGTCAKRDTGTSVHFWPDSTYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           +  F+  +L H L+  + L   V +S  DK +      T  Y  G+  ++S        L
Sbjct: 177 IPRFSSKSLSHVLKAKAVLCPGVNVSFTDKVNNTQ--ETWCYADGLTDYLSEAVAEFVRL 234

Query: 244 MQSPIRIQGSRDNISIDLAM-RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P   +   DN +++ +M    +G       + N IP   GGTH++GLR  +   +  
Sbjct: 235 PEEPFTGKFEGDNEAVEWSMLWLPEGGDLLTESYVNLIPTVQGGTHVNGLRQGVLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V S V +
Sbjct: 295 FCEFHNLLPRG-IKLTADDTWERCAYVLSVKMQDPQFAGQTKERLSSRQTSAFVASAVKN 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    +++ +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQVGELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           + +ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L+SQE+  +  A+G
Sbjct: 411 RYTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDISVAIG 470

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
                DS D+++LRY KI I+ DAD DG HI TLL   F R  P+L+  G +Y+  PPLY
Sbjct: 471 MDP--DSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFPALVKQGHVYMAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DE      L   S  +        KG+   N L+         +  + 
Sbjct: 529 RIDLGKEVSYALDEAEKNAILQRLSRKKGKPNVQRFKGLGEMNPLQLR-------ETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                  +  I+            D  +    +    N L    ++ +  
Sbjct: 582 PNTRRLVQLVIDDENYQETLGM-MDMLLAKKRSEDRRNWLQEKGDEVDIE 630



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDE-VE 786
           +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D    +   +   L+  +  E
Sbjct: 555 KKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLVIDDENYQETLGMMDMLLAKKRSE 614

Query: 787 PRREFIQE 794
            RR ++QE
Sbjct: 615 DRRNWLQE 622


>gi|206578624|ref|YP_002236552.1| DNA topoisomerase IV, B subunit [Klebsiella pneumoniae 342]
 gi|288933535|ref|YP_003437594.1| DNA topoisomerase IV subunit beta [Klebsiella variicola At-22]
 gi|290511406|ref|ZP_06550775.1| DNA topoisomerase IV, B subunit [Klebsiella sp. 1_1_55]
 gi|206567682|gb|ACI09458.1| DNA topoisomerase IV, B subunit [Klebsiella pneumoniae 342]
 gi|288888264|gb|ADC56582.1| DNA topoisomerase IV, B subunit [Klebsiella variicola At-22]
 gi|289776399|gb|EFD84398.1| DNA topoisomerase IV, B subunit [Klebsiella sp. 1_1_55]
          Length = 631

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/645 (34%), Positives = 338/645 (52%), Gaps = 21/645 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G +Y ++F NG     L VTG+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDGQVYSIAFENGEKVEDLHVTGTCGKRNTGTSVHFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +        G+  ++         L
Sbjct: 177 SPRFSVSRLTHLLKAKAVLCPGVEIVFRDQVNDSEQRWCY--ADGLNDYLCEAVNGLPLL 234

Query: 244 MQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + P      G  + +     +   +G       + N IP   GGTH++GLR  L   + 
Sbjct: 235 PEKPFVGTFSGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 293

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V 
Sbjct: 294 EFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 352

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D
Sbjct: 353 DAFSLWLNQNVQAAELLAEMAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQD 409

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
             ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++
Sbjct: 410 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SV 467

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
             GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PPL
Sbjct: 468 AIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPL 527

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I  GK + Y   EE     L      +        KG+   N ++        +D   
Sbjct: 528 YRIDLGKEVYYALTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQ---LRETTLDPNT 584

Query: 602 KDFYPNHDKTFIEQ--AVISGVFNCESDQEINVSLASKLANRLNF 644
           +           EQ    +  +   +   E   +   +  +  + 
Sbjct: 585 RRLVQLVISDEDEQQTTAMMDMLLAKKRSEDRRNWLQEKGDMADL 629



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 98/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAELLAEMAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKE 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVALPPLYRIDLGKEVYYALTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLVISDEDEQQTTAMMDMLLAKKRSEDRRNWLQE 622


>gi|262370827|ref|ZP_06064151.1| topoisomerase IV subunit B [Acinetobacter johnsonii SH046]
 gi|262314189|gb|EEY95232.1| topoisomerase IV subunit B [Acinetobacter johnsonii SH046]
          Length = 626

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/629 (36%), Positives = 346/629 (55%), Gaps = 15/629 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+A+ ITVT
Sbjct: 2   SQYTAQSLEVLSGLDPVRRRPGMY---TDTTRP-NHLAQEVIDNAVDEALAGHANKITVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALSS +++ ++R+GN+Y+M+F +G    PLVV    +    TGT V F P +  F   
Sbjct: 118 VNALSSRVEVEVQRQGNLYQMAFEHGEPTAPLVVLEGKAPKRATGTTVHFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + +QI+ +D+ + E        + G+  ++      ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLQINYVDQINDEKIVWQF--ENGLVDYLMDEIEDREILPH 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  +  S + A+ WN DG       + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVATGDAERASAEFAICWNVDGGELVQESYVNLIPTAQGGTHVNGLRSGVTDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E   +V++   D  
Sbjct: 296 ELRNLLPRN-MKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASGIVQNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A  + +     S      + A+    RK ++   +LPGKL+DC     ++
Sbjct: 355 ALWLNQNSDIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVAGPTLPGKLSDCVGHTLEE 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHNIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P L+  G LY+  PPLY I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPILVEEGHLYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
              K + Y  D++ LE  L                G ++ + LR    D      +  D 
Sbjct: 530 DDAKDVHYALDDDELESMLKKCKTKNPQITRFKGLGEMNASQLRETTLDPNTRRLVQLDL 589

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVS 633
             +H    +   +++   + +  + +   
Sbjct: 590 DDSHFTAGLLDKLLAKKRSSDRKEWLEQK 618



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           K   + R+KGLGEMNASQL ETTL+P+TR L+++ + D
Sbjct: 554 KNPQITRFKGLGEMNASQLRETTLDPNTRRLVQLDLDD 591


>gi|324114937|gb|EGC08902.1| DNA topoisomerase IV [Escherichia fergusonii B253]
          Length = 630

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 222/647 (34%), Positives = 335/647 (51%), Gaps = 20/647 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFSGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y   EE  E  L      +        KG+   N L+         +  +    
Sbjct: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLR-------ETTLDPNT 583

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               + FI+        +   D  +    +    N L    + +E  
Sbjct: 584 RRLVQLFIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 99/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKH 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLFIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|98991102|gb|ABF60569.1| DNA gyrase subunit B [Spiroplasma phoeniceum]
 gi|98991104|gb|ABF60570.1| DNA gyrase subunit B [Spiroplasma phoeniceum]
          Length = 557

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 244/526 (46%), Positives = 358/526 (68%), Gaps = 6/526 (1%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISA 95
           D   GLHH+++E++DN+IDE L  +A+ I + +N D S TV DNGRGIP ++H +  +S 
Sbjct: 2   DNARGLHHLVWEIVDNSIDEVLANFANKIKIIINKDESITVVDNGRGIPIEIHPKTKVST 61

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GI 154
            E + T LHAGGKF+  +YK+SGGLHGVG SVVNALS +LK+++++    Y M F N G 
Sbjct: 62  LETVFTILHAGGKFDSNTYKISGGLHGVGASVVNALSKYLKVKVRKNNKKYVMEFHNGGQ 121

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID- 212
           +  P+   GS   +TGT VTFLP   IF     F++ T+Q+R+++L+FLN  ++ISL+D 
Sbjct: 122 ILTPIKEVGSTS-ETGTTVTFLPDEKIFKEITIFSFSTIQNRIKQLAFLNKGLEISLVDL 180

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +   E + +   +  GI+ +V  L++     +     ++G  +NI ++  +++ND Y EN
Sbjct: 181 REDDEEKMVVYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIENNIVVEFGLQYNDNYSEN 240

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQI-TSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +  F NNI   +GGTH  G++ A+ R+I   +   +  +K ++     DD +EG T+++S
Sbjct: 241 IFSFCNNINTHEGGTHEEGIKLAIVREINNYFKNINKNNKGNEDKFTWDDIKEGMTTIIS 300

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           I+ PDP++  QTK+KL +SEV+ +V + V  GLS++L E+P ++K I++K+  +   R A
Sbjct: 301 IRHPDPQYEGQTKKKLGNSEVKKIVSNIVGKGLSSYLLENPEDSKKIIEKISLSLKARIA 360

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A+ A++ TRRK V+D  SLPGKLADC  +D K +EL++VEGDSAGGSAK GR+R+ QAIL
Sbjct: 361 AQSAKETTRRKTVMDSFSLPGKLADCETKDSKIAELYIVEGDSAGGSAKSGRNRKFQAIL 420

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGKILNVE+A+  K+  + EI ++IT+LG GI +D+F+  KLRY K+IIMTDADVDGA
Sbjct: 421 PLRGKILNVEKAKQIKIFENNEINSIITSLGAGI-KDNFNDKKLRYQKVIIMTDADVDGA 479

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           HIR LLLTFF+R M  LI NG +YI +PPLY I  G  ++Y   + 
Sbjct: 480 HIRILLLTFFYRYMKDLIENGNIYIAQPPLYKIQNGNQIEYAYSDN 525



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/19 (68%), Positives = 15/19 (78%)

Query: 732 KGISMQRYKGLGEMNASQL 750
           K  ++QRYKGLGEMN  QL
Sbjct: 539 KNYTIQRYKGLGEMNPEQL 557


>gi|149907751|ref|ZP_01896498.1| DNA topoisomerase IV subunit B [Moritella sp. PE36]
 gi|149809421|gb|EDM69350.1| DNA topoisomerase IV subunit B [Moritella sp. PE36]
          Length = 629

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 217/639 (33%), Positives = 327/639 (51%), Gaps = 17/639 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y+A SI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  ITV
Sbjct: 2   TQEYNAGSIEVLNGLEPVRRRPGMY---TDTVRP-NHLGQEVIDNSVDEALAGHAQSITV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+ D S  VSD+GRG+P D+H  EG+S  E+I+++LHAGGKF+  SY+ SGGLHGVG+S
Sbjct: 58  TLHADQSLEVSDDGRGMPVDIHPVEGVSGVELILSKLHAGGKFSNDSYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ I+R G IY+++F +G   + L V G+ G   TGT+V F P    F   
Sbjct: 118 VVNALSKRVEITIRRGGQIYQIAFEHGEKVSELEVIGTIGIRTTGTKVHFWPDPSYFDSG 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLDRHKKPL 243
           +F+   L H LR  + L   + I   DK + E          +  +   +       +  
Sbjct: 178 NFSAKRLVHNLRAKAVLCPGLSIKFDDKVNKEKHAWCFEKGLEDYLMESLDKWPTIPETP 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                       + ++   +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 238 FVGSFSANNEAADWAV---IWLPEGGESVTESYVNLIPTVLGGTHVNGLRQGLLDAMREF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +  + +LS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 295 CEFRSLLPRG-VKLTPDDIWDRCSYILSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDS 353

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL  +   A+++ +  ++ +       +A     RK V    +LPGKL DCS +DP 
Sbjct: 354 FSLWLNSNTDLAELLAEVCINNAQ---KRLKASKKVARKRVTSGPALPGKLTDCSGQDPM 410

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           +SELFLVEGDSAGGSAKQ R RE QA++PLRGKILN       ++L+S+E+  +  ++  
Sbjct: 411 RSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSAQVLASEEVHNI--SVAL 468

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS DI+ LRY K+ I+ DAD DG HI TLL   F++   +++  G  ++  PPLY 
Sbjct: 469 GIDPDSDDISGLRYGKVCILADADSDGLHIATLLCALFYKHFRAMVEAGHAFVAMPPLYR 528

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DE      L      ++       +           + +   +D   + 
Sbjct: 529 IDIGKEVFYALDEAEKNGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRE-TTMDPNTRR 587

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
                     E   +  +   +       +      N L
Sbjct: 588 LVRLTIDDADETFAMMDMLLAKKRSADRRAWLEDKGNML 626



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  ++G +++QR+KGLGEMN  QL ETT++P+TR L+R+ I DA +   +   L
Sbjct: 547 ILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVRLTIDDADETFAMMDML 606

Query: 781 MGDE-VEPRREFIQE 794
           +  +    RR ++++
Sbjct: 607 LAKKRSADRRAWLED 621


>gi|157372496|ref|YP_001480485.1| DNA topoisomerase IV subunit B [Serratia proteamaculans 568]
 gi|157324260|gb|ABV43357.1| DNA topoisomerase IV, B subunit [Serratia proteamaculans 568]
          Length = 631

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/565 (40%), Positives = 324/565 (57%), Gaps = 14/565 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+IM RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ +KR+GN+Y ++F NG     L VTGS    +TGT + F P    F 
Sbjct: 117 ISVVNALSTRVEVNVKRDGNVYSIAFENGDKVQDLAVTGSCGKRNTGTSIHFWPDEKFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I  IDK +   +      + G+  ++         L
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIYFIDKLNNTEQRWCY--QDGLTDYLMEAVNGLITL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            ++      + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEAAFVGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNIQAAEQLAELAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   SL+  G +Y+  PPLY
Sbjct: 469 IGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVKGGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQS 567
            I  GK + Y  DEE     L    
Sbjct: 529 RIDLGKEVFYALDEEEKAGVLEQLK 553



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 100/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNIQAAEQLAELAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
              N  + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 L--NMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +  G
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVKG 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPPQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ +   D  Q   +   L+  +  E RR ++Q+
Sbjct: 578 TTLDPNTRRLVQLTVSDEDVDQTLAMMDMLLAKKRSEDRRNWLQD 622


>gi|76798992|ref|ZP_00781191.1| DNA gyrase, B subunit [Streptococcus agalactiae 18RS21]
 gi|76585663|gb|EAO62222.1| DNA gyrase, B subunit [Streptococcus agalactiae 18RS21]
          Length = 599

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 248/576 (43%), Positives = 371/576 (64%), Gaps = 5/576 (0%)

Query: 48  VLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
           ++DN+IDE+L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGG
Sbjct: 1   IVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGG 60

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF    YKVSGGLHGVG SVVNALS+ L +++ + G ++   +  G++ N L + G   +
Sbjct: 61  KFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-D 119

Query: 168 DTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            +GT V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR  +  E    Y+
Sbjct: 120 LSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKEYHYE 179

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI ++V +++ +K+ + ++PI   G  D IS+++AM++  GY E V+ F NNI   +GG
Sbjct: 180 GGIGSYVEFINENKEVIFENPIYTDGELDGISVEVAMQYTTGYQETVMSFANNIHTHEGG 239

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK K
Sbjct: 240 THEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTK 299

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +SEV  +     ++  + +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+
Sbjct: 300 LGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLE 359

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I++LPGKLADCS  + + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  D
Sbjct: 360 ISNLPGKLADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMD 419

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           K+L+++EI +L TA+GTG G D FD++K+RY K++IMTDADVDGAHIRTLLLT  +R M 
Sbjct: 420 KILANEEIRSLFTAMGTGFGAD-FDVSKVRYQKLVIMTDADVDGAHIRTLLLTLIYRFMR 478

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            ++  G++YI +PP+YG+ +  S      +  +         + +      SK  + +  
Sbjct: 479 PVLEAGYVYIAQPPIYGV-KVGSEIKAYIQPGVNQ-EEELRQALDTYSSGRSKPTVQRYK 536

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
               +DD    +  +        +  ++ A  +   
Sbjct: 537 GLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKI 572



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I + I  G   +       LDT +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 497 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHQLWETTMDPE 554

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+ N++ S LDI
Sbjct: 555 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEANAVYSNLDI 599


>gi|306818812|ref|ZP_07452534.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris
           ATCC 35239]
 gi|304648498|gb|EFM45801.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris
           ATCC 35239]
          Length = 706

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/656 (34%), Positives = 351/656 (53%), Gaps = 52/656 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A  + +L+GL+AV+KRP+MYIG TD + GL H ++E++DN++DE+L G+ D I V 
Sbjct: 11  QDYSAHHLSVLEGLEAVRKRPAMYIGSTD-QRGLMHCLWEIIDNSVDEALAGFCDHIEVF 69

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V DNGRG+P D     G+S  EV+ T+LHAGGKF+   YKV+GGLHGVG SV
Sbjct: 70  LYPDYSAEVRDNGRGVPVDTVPGTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 129

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGS-AG 166
           VNALS+ + +++ R G+I+++ F  G                      ++ L   G  + 
Sbjct: 130 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 189

Query: 167 NDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           + TGT V F     IF     F++++L+ R R+ SFL   + I++ D R  EP+  T  +
Sbjct: 190 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLCITVTDLRGEEPQSETYLH 249

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------RDNISIDLAMRW 265
           KGG   +V +L   K       +   G+                         +D+A+RW
Sbjct: 250 KGGTVDYVEFLAPDKGITDTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVDIALRW 309

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG---SKKDKRSVIGDDC 322
             GY      + N I    GGTH+ G  SAL + + + ++ +            +  +D 
Sbjct: 310 GAGYDTVEQSYVNIIETPVGGTHIQGFESALVKTLRTEIQANSRKLKLGSKDNKIEKEDI 369

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----II 378
             G T+V+++++P+P F  QTKE L S+ V+ +V   V + L A+L     + K     +
Sbjct: 370 LAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKTQVSAL 429

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++K++     R +AR ++++TRRK  L+ ++LP KL DC   D +KSELF+VEGDSA G+
Sbjct: 430 LEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGDSALGT 489

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK  R+ E QA+ P+RGKILNV++    +ML + E   +I  +G G G+  FD+++ RY 
Sbjct: 490 AKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRT-FDLDQARYG 548

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD-EE 557
           K+I+MTDADVDGAHIRTLLLT FFR M  LI  G +Y   PPL+ I      +   +   
Sbjct: 549 KVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPGEFRY 608

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
           +  +  +++ L+   E     K  I +      +D     +  +   +    +  +
Sbjct: 609 TYSEDQLHRELAYLAENGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 664



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 15/180 (8%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           ++ A  +  I   S +++         ++      V    +        F      I + 
Sbjct: 523 AECAAIIQVIGAGSGRTFDLDQARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAG 582

Query: 696 RIEENYLTILSLICN------GDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEM 745
           R+      +  +  N      G+         L   +  +   G S    +QRYKGLGEM
Sbjct: 583 RVYAAVPPLHRIQVNAKGKTPGEFRYTYSEDQLHRELAYLAENGRSYKEPIQRYKGLGEM 642

Query: 746 NASQLWETTLNPDTRSLLRVKITDAS---QADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +A QL ETT++P  R+L R+++ D      A+D+F  LMG  V PRR+FI + +  + LD
Sbjct: 643 DADQLAETTMDPQHRTLRRIRLVDEQPFHTAEDVFEVLMGSAVPPRRDFIVQGA--ARLD 700


>gi|227875503|ref|ZP_03993643.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227843839|gb|EEJ54008.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 736

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/665 (34%), Positives = 354/665 (53%), Gaps = 54/665 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A  + +L+GL+AV+KRP+MYIG TD + GL H ++E++DN++DE+L G+ D I V 
Sbjct: 41  QDYSAHHLSVLEGLEAVRKRPAMYIGSTD-QRGLMHCLWEIIDNSVDEALAGFCDHIEVF 99

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V DNGRG+P D     G+S  EV+ T+LHAGGKF+   YKV+GGLHGVG SV
Sbjct: 100 LYPDYSAEVRDNGRGVPVDTVPGTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 159

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGS-AG 166
           VNALS+ + +++ R G+I+++ F  G                      ++ L   G  + 
Sbjct: 160 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 219

Query: 167 NDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           + TGT V F     IF     F++++L+ R R+ SFL   ++I++ D R  EP+  T  +
Sbjct: 220 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLRITVTDSRGEEPQSETYLH 279

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------RDNISIDLAMRW 265
           KGG   +V +L   K       +   G+                         +D+A+RW
Sbjct: 280 KGGTVDYVEFLAPDKGITGTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVDIALRW 339

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG---SKKDKRSVIGDDC 322
             GY      + N I    GGTH+ G  +AL + + + ++ +            +  +D 
Sbjct: 340 GVGYDTVEQSYVNIIETPVGGTHVQGFETALVKTLRTEIQANSRKLKLGSKDNKIEKEDI 399

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----II 378
             G T+V+++++P+P F  QTKE L S+ V+ +V   V + L A+L     + K     +
Sbjct: 400 LAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKTQVSAL 459

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++K++     R +AR ++++TRRK  L+ ++LP KL DC   D +KSELF+VEGDSA G+
Sbjct: 460 LEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGDSALGT 519

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK  R+ E QA+ P+RGKILNV++    +ML + E   +I  +G G G+  FD+++ RY 
Sbjct: 520 AKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRT-FDLDQARYG 578

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD-EE 557
           K+I+MTDADVDGAHIRTLLLT FFR M  LI  G +Y   PPL+ I      +   +   
Sbjct: 579 KVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPGEFRY 638

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP--NHDKTFIEQ 615
           +  +  +++ L+         K  I +      +D     +  +   +      +   EQ
Sbjct: 639 TYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRLVDEQ 698

Query: 616 AVISG 620
            + + 
Sbjct: 699 PLHTA 703



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 15/180 (8%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           ++ A  +  I   S +++         ++      V    +        F      I + 
Sbjct: 553 AECAAIIQVIGAGSGRTFDLDQARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAG 612

Query: 696 RIEENYLTILSLICN------GDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEM 745
           R+      +  +  N      G+         L   +  + R G S    +QRYKGLGEM
Sbjct: 613 RVYAAVPPLHRIQVNAKGKTPGEFRYTYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEM 672

Query: 746 NASQLWETTLNPDTRSLLRVKITDAS---QADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +A QL ETT++P  R+L R+++ D      A+D+F  LMG  V PRR+FI + +  + LD
Sbjct: 673 DADQLAETTMDPQHRTLRRIRLVDEQPLHTAEDVFEVLMGSAVPPRRDFIVQGA--ARLD 730


>gi|315940113|gb|ADU56235.1| DNA gyrase subunit B [Nocardia speluncae]
          Length = 561

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 248/562 (44%), Positives = 340/562 (60%), Gaps = 33/562 (5%)

Query: 47  EVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           EV+DN++DE++ GYA  I VTL  DG   V D+GRGIP  +H ++GI   EV+MT+LHAG
Sbjct: 1   EVVDNSVDEAMAGYATKIEVTLLADGGVQVVDDGRGIPVAMH-DQGIPTIEVVMTQLHAG 59

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALSS L+  I  +G  +  ++ + +    L V G A 
Sbjct: 60  GKFDSDSYAVSGGLHGVGISVVNALSSRLEAEIDTDGYHWSQTYKDAVP-GQL-VQGDAT 117

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------ 214
             TGT + F     IF    +N++T+  RL+E++FLN  + I L D+R            
Sbjct: 118 KATGTTIRFWADPAIFETTTYNFETISRRLQEMAFLNKGLTIVLTDERVSATEITDEVVS 177

Query: 215 -----------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
                              + +  T  Y GG+E FV +++R K+P+  S     G     
Sbjct: 178 ETAEAPKHDEGGEKPALEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVFSFNGKGPGH 237

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A++WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K    ++
Sbjct: 238 ELEVALQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNL 297

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK 
Sbjct: 298 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKT 357

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV K + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGG
Sbjct: 358 IVNKAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 417

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           SAK GR    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI KLRY
Sbjct: 418 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGI-HDEFDIAKLRY 476

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           HKI++M DADVDG HI TLLLT  FR M  LI  G +Y+ +PPLY +   +S       +
Sbjct: 477 HKIVLMADADVDGQHISTLLLTLLFRFMRPLIEQGHVYLAQPPLYKLKWQRSEPEFAYSD 536

Query: 558 SLEDYLINQSLSEEIELFCDSK 579
              D L+   LS   ++  D  
Sbjct: 537 RERDGLLEAGLSAGKKINKDDG 558


>gi|98991100|gb|ABF60568.1| DNA gyrase subunit B [Spiroplasma phoeniceum]
          Length = 557

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 245/526 (46%), Positives = 358/526 (68%), Gaps = 6/526 (1%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISA 95
           D   GLHH+++E++DN+IDE L  +A+ I + +N D S TV DNGRGIP ++H +  +S 
Sbjct: 2   DNARGLHHLVWEIVDNSIDEVLANFANKIKIIINKDESITVVDNGRGIPIEIHPKTKVST 61

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GI 154
            E + T LHAGGKF+  +YK+SGGLHGVG SVVNALS +LK+++++    Y M F N G 
Sbjct: 62  LETVFTILHAGGKFDSNTYKISGGLHGVGASVVNALSKYLKVKVRKNNKKYVMEFHNGGQ 121

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID- 212
           +  P+   GS   +TGT VTFLP   IF     F++ T+Q+R+++L+FLN  ++ISL+D 
Sbjct: 122 ILTPIKEVGSTS-ETGTTVTFLPDEKIFKEITIFSFSTIQNRIKQLAFLNKGLEISLVDL 180

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +   E + +   +  GI+ +V  L++     +     ++G  DNI ++  +++ND Y EN
Sbjct: 181 REDDEEKMVVYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNIVVEFGLQYNDNYSEN 240

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQI-TSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +  F NNI   +GGTH  G++ A+ R+I   +   +  +K ++     DD +EG T+++S
Sbjct: 241 IFSFCNNINTHEGGTHEEGIKLAIVREINNYFKNINKNNKGNEDKFTWDDIKEGMTTIIS 300

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           I+ PDP++  QTK+KL +SEV+ +V + V  GLS++L E+P ++K I++K+  +   R A
Sbjct: 301 IRHPDPQYEGQTKKKLGNSEVKKIVSNIVGKGLSSYLLENPEDSKKIIEKISLSLKARIA 360

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A+ A++ TRRK V+D  SLPGKLADC  +D K +EL++VEGDSAGGSAK GR+R+ QAIL
Sbjct: 361 AQSAKETTRRKTVMDSFSLPGKLADCETKDSKIAELYIVEGDSAGGSAKSGRNRKFQAIL 420

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGKILNVE+A+  K+  + EI ++IT+LG GI +D+F+  KLRY K+IIMTDADVDGA
Sbjct: 421 PLRGKILNVEKAKQIKIFENNEINSIITSLGAGI-KDNFNDKKLRYQKVIIMTDADVDGA 479

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           HIR LLLTFF+R M  LI NG +YI +PPLY I  G  ++Y   + 
Sbjct: 480 HIRILLLTFFYRYMKDLIENGNIYIAQPPLYKIQNGNQIEYAYSDN 525



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/19 (68%), Positives = 15/19 (78%)

Query: 732 KGISMQRYKGLGEMNASQL 750
           K  ++QRYKGLGEMN  QL
Sbjct: 539 KNYTIQRYKGLGEMNPEQL 557


>gi|317049581|ref|YP_004117229.1| DNA topoisomerase IV subunit B [Pantoea sp. At-9b]
 gi|316951198|gb|ADU70673.1| DNA topoisomerase IV, B subunit [Pantoea sp. At-9b]
          Length = 631

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 225/587 (38%), Positives = 330/587 (56%), Gaps = 16/587 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MSQSSYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R G +Y+++F NG     L VTG+ A  +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRNGEVYDIAFENGEKVQDLHVTGTVAKRNTGTSVHFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +      + G+  ++         L
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTEQRWCY--QDGLTDYLCEAVNGLPTL 234

Query: 244 MQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + P      G  + +     +   +G       + N IP   GGTH++GLR  L   + 
Sbjct: 235 PEKPFVGSFAGEVEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 293

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V + V 
Sbjct: 294 EFCEFRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSAVVK 352

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D
Sbjct: 353 DAFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQD 409

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
             K+ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++
Sbjct: 410 LNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SV 467

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
             GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPL
Sbjct: 468 AIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVQNGHVYVAMPPL 527

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           Y I  GK + Y  DE+  E  L      +        KG+   N L+
Sbjct: 528 YRIDLGKEVYYALDEDEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQ 574



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 11/84 (13%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDAS 771
            LD     G       +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ +   D  
Sbjct: 539 ALDEDEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTVSDDDVE 598

Query: 772 QADDLFSRLMGDE-VEPRREFIQE 794
           Q   +   L+  +  E RR ++QE
Sbjct: 599 QTLRVMDMLLAKKRSEDRRNWLQE 622


>gi|188532591|ref|YP_001906388.1| DNA topoisomerase IV subunit B [Erwinia tasmaniensis Et1/99]
 gi|188027633|emb|CAO95483.1| DNA topoisomerase IV subunit B [Erwinia tasmaniensis Et1/99]
          Length = 631

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/636 (35%), Positives = 332/636 (52%), Gaps = 17/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+ADSI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNADSIEVLSGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGHAKRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I  RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHPDQSLEVIDDGRGMPVDIHPEEGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R   +YEM+F NG     L VTG+ A  +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRNAEVYEMAFENGDKVQELTVTGTVAKRNTGTRVQFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDKLNKTEQSWCYADGLTDYLMEAVNGLPLLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + +     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 KPFVGTFSGDVEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEMLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DE      L      +        KG+   N L+        +D   + 
Sbjct: 530 IDLGKEVYYALDEAEKAGILEQLKRKKGKPGVQRFKGLGEMNPLQ---LRETTLDPNTRR 586

Query: 604 F--YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                  D+   +   +  +   +   E   +   +
Sbjct: 587 LVQLTIGDEDVDQTLAVMDMLLAKKRSEDRRNWLQE 622



 Score = 90.8 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 97/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEMLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LSR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKN 517

Query: 712 DKIKITGP----CSLLDTI---FSIGRK-GI-----------SMQRYKGLGEMNASQLWE 752
             + +  P      L   +        K GI            +QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEAEKAGILEQLKRKKGKPGVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTIGDEDVDQTLAVMDMLLAKKRSEDRRNWLQE 622


>gi|271498905|ref|YP_003331930.1| DNA topoisomerase IV subunit B [Dickeya dadantii Ech586]
 gi|270342460|gb|ACZ75225.1| DNA topoisomerase IV, B subunit [Dickeya dadantii Ech586]
          Length = 631

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/648 (35%), Positives = 347/648 (53%), Gaps = 22/648 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHPDQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ ++R+G +Y+++F NG     L+VTG+ G  +TGT V F P    F 
Sbjct: 117 ISVVNALSTRVEVTVRRDGQVYDIAFENGDKVQDLMVTGTCGRRNTGTRVRFWPDVTFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+  +L H L+  + L   V+I   D  +   +      +GG+  ++         L
Sbjct: 177 SPRFSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTEQRWCY--QGGLSDYLCEAVNGLPTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P       D  +++ A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFVGAIPGDTEAVEWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNILPRG-VKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 SKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY
Sbjct: 469 IGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L       E       K  + +      ++     +  + 
Sbjct: 529 RIDLGKEVYYALDEEEKAGIL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  +  + +  I        D  +    +    N L    +K+E
Sbjct: 582 PNTRRLVQLTVSEQDIEQTM-ATMDMLLAKKRSEDRRNWLQEKGDKAE 628



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 104/294 (35%), Gaps = 46/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LSK--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+  
Sbjct: 458 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQG 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + GI           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGILEQLKRKKGKPNVQRFKGLGEMNPMQLRE 577

Query: 753 TTLNPDTRSLLRVKIT--DASQADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ ++  D  Q       L+  +  E RR ++QE    + LD+
Sbjct: 578 TTLDPNTRRLVQLTVSEQDIEQTMATMDMLLAKKRSEDRRNWLQEKGDKAELDV 631


>gi|167077363|gb|ABZ10903.1| DNA gyrase subunit B [Burkholderia stabilis]
          Length = 630

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 276/634 (43%), Positives = 390/634 (61%), Gaps = 20/634 (3%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALSSWL+L ++R G    M F  GI              +P++VTG    + GT
Sbjct: 1   GVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTE-NRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ 
Sbjct: 60  EVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYINKTKTNLHPTIFFATGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 178 LRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LP
Sbjct: 238 VRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS
Sbjct: 298 GKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  
Sbjct: 358 EQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIER 417

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  VIS + L    
Sbjct: 418 GYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAVISGDALGELA 477

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              L    +I      +D   +E  +     +  S++    + A  L   L+  A K+E 
Sbjct: 478 RSYLLSRSVIDRLSRLYDPAALEAIMDGVAIDL-SNEASTEASAKALHAALHDEALKNEV 536

Query: 652 S----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +        + V+R   G     V++     +   +     +N           +
Sbjct: 537 RVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVATANTFTGLIGEGAVI 596

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                 + ++   S +  + +   + +S QRYKG
Sbjct: 597 KRGERSMAVSDFKSAMKWLLADAERNVSKQRYKG 630


>gi|16761956|ref|NP_457573.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766481|ref|NP_462096.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143443|ref|NP_806785.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415122|ref|YP_152197.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181695|ref|YP_218112.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161616170|ref|YP_001590135.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167551906|ref|ZP_02345659.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990269|ref|ZP_02571369.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231780|ref|ZP_02656838.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168243007|ref|ZP_02667939.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262861|ref|ZP_02684834.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463611|ref|ZP_02697528.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819756|ref|ZP_02831756.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443762|ref|YP_002042448.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450180|ref|YP_002047178.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194468478|ref|ZP_03074462.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197250406|ref|YP_002148108.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262850|ref|ZP_03162924.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364051|ref|YP_002143688.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243780|ref|YP_002217161.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388424|ref|ZP_03215036.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928305|ref|ZP_03219505.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354097|ref|YP_002227898.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858440|ref|YP_002245091.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213424345|ref|ZP_03357169.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213579856|ref|ZP_03361682.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213645890|ref|ZP_03375943.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|224584982|ref|YP_002638781.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238909982|ref|ZP_04653819.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|61229760|sp|P0A2I5|PARE_SALTY RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|61229761|sp|P0A2I6|PARE_SALTI RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|25292821|pir||AE0889 topoisomerase IV chain B [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16421737|gb|AAL22055.1| DNA topoisomerase IV, subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504258|emb|CAD03013.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139077|gb|AAO70645.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129379|gb|AAV78885.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129328|gb|AAX67031.1| DNA topoisomerase IV, subunit B [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|149693021|emb|CAK55545.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|149693023|emb|CAK55546.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|161365534|gb|ABX69302.1| hypothetical protein SPAB_03972 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402425|gb|ACF62647.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408484|gb|ACF68703.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194454842|gb|EDX43681.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195633404|gb|EDX51818.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095528|emb|CAR61093.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197214109|gb|ACH51506.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241105|gb|EDY23725.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938296|gb|ACH75629.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605522|gb|EDZ04067.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322627|gb|EDZ07824.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273878|emb|CAR38879.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205323370|gb|EDZ11209.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331076|gb|EDZ17840.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333857|gb|EDZ20621.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337845|gb|EDZ24609.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343316|gb|EDZ30080.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348386|gb|EDZ35017.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710243|emb|CAR34600.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224469510|gb|ACN47340.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261248311|emb|CBG26148.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995372|gb|ACY90257.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159735|emb|CBW19254.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320087633|emb|CBY97397.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225861|gb|EFX50915.1| Topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613584|gb|EFY10525.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621176|gb|EFY18034.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624239|gb|EFY21073.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628023|gb|EFY24812.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633140|gb|EFY29882.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636282|gb|EFY32990.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643535|gb|EFY40096.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647448|gb|EFY43937.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648633|gb|EFY45080.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653685|gb|EFY50011.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657793|gb|EFY54061.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663894|gb|EFY60093.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669093|gb|EFY65244.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672912|gb|EFY69019.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678097|gb|EFY74160.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681273|gb|EFY77306.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687796|gb|EFY83763.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716181|gb|EFZ07752.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323131542|gb|ADX18972.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195608|gb|EFZ80785.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199710|gb|EFZ84800.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202541|gb|EFZ87581.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207970|gb|EFZ92916.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212478|gb|EFZ97295.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215040|gb|EFZ99788.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222770|gb|EGA07135.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224148|gb|EGA08441.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230472|gb|EGA14590.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235176|gb|EGA19262.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239216|gb|EGA23266.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244426|gb|EGA28432.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247042|gb|EGA31008.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253476|gb|EGA37305.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256218|gb|EGA39954.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323267298|gb|EGA50782.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269299|gb|EGA52754.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624937|gb|EGE31282.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629215|gb|EGE35558.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990047|gb|AEF09030.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 630

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/583 (37%), Positives = 318/583 (54%), Gaps = 12/583 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFNGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAEQLAEMAIASAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            GK + Y   EE     L      +        KG+   N ++
Sbjct: 531 LGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 106/294 (36%), Gaps = 46/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   +++        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKN 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I+D      + +   L+  +  E RR ++QE    + LD+
Sbjct: 577 TTLDPNTRRLVQLTISDEDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLADLDV 630


>gi|269977250|ref|ZP_06184223.1| DNA gyrase subunit B [Mobiluncus mulieris 28-1]
 gi|269934553|gb|EEZ91114.1| DNA gyrase subunit B [Mobiluncus mulieris 28-1]
          Length = 706

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/665 (34%), Positives = 353/665 (53%), Gaps = 54/665 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A  + +L+GL+AV+KRP+MYIG TD + GL H ++E++DN++DE+L G+ D I V 
Sbjct: 11  QDYSAHHLSVLEGLEAVRKRPAMYIGSTD-QRGLMHCLWEIIDNSVDEALAGFCDHIEVF 69

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V DNGRG+P D     G+S  EV+ T+LHAGGKF+   YKV+GGLHGVG SV
Sbjct: 70  LYPDYSAEVRDNGRGVPVDTVPGTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 129

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGS-AG 166
           VNALS+ + +++ R G+I+++ F  G                      ++ L   G  + 
Sbjct: 130 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 189

Query: 167 NDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           + TGT V F     IF     F++++L+ R R+ SFL   + I++ D R  EP+  T  +
Sbjct: 190 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLCITVTDLRGEEPQSETYLH 249

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------RDNISIDLAMRW 265
           KGG   +V +L   K       +   G+                         +D+A+RW
Sbjct: 250 KGGTVDYVEFLAPDKGITDTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVDIALRW 309

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG---SKKDKRSVIGDDC 322
             GY      + N I    GGTH+ G  SAL + + + ++ +            +  +D 
Sbjct: 310 GAGYDTVEQSYVNIIETPVGGTHIQGFESALVKTLRTEIQANSRKLKLGSKDNKIEKEDI 369

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----II 378
             G T+V+++++P+P F  QTKE L S+ V+ +V   V + L A+L     + K     +
Sbjct: 370 LAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKTQVSAL 429

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++K++     R +AR ++++TRRK  L+ ++LP KL DC   D +KSELF+VEGDSA G+
Sbjct: 430 LEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGDSALGT 489

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK  R+ E QA+ P+RGKILNV++    +ML + E   +I  +G G G+  FD+++ RY 
Sbjct: 490 AKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRT-FDLDQARYG 548

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD-EE 557
           K+I+MTDADVDGAHIRTLLLT FFR M  LI  G +Y   PPL+ I      +   +   
Sbjct: 549 KVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPGEFRY 608

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP--NHDKTFIEQ 615
           +  +  +++ L+         K  I +      +D     +  +   +      +   EQ
Sbjct: 609 TYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRLVDEQ 668

Query: 616 AVISG 620
            + + 
Sbjct: 669 PLHTA 673



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 15/180 (8%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           ++ A  +  I   S +++         ++      V    +        F      I + 
Sbjct: 523 AECAAIIQVIGAGSGRTFDLDQARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAG 582

Query: 696 RIEENYLTILSLICN------GDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEM 745
           R+      +  +  N      G+         L   +  + R G S    +QRYKGLGEM
Sbjct: 583 RVYAAVPPLHRIQVNAKGKTPGEFRYTYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEM 642

Query: 746 NASQLWETTLNPDTRSLLRVKITDAS---QADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +A QL ETT++P  R+L R+++ D      A+D+F  LMG  V PRR+FI + +  + LD
Sbjct: 643 DADQLAETTMDPQHRTLRRIRLVDEQPLHTAEDVFEVLMGSAVPPRRDFIVQGA--ARLD 700


>gi|307701026|ref|ZP_07638051.1| DNA gyrase, B subunit, C-terminal domain protein [Mobiluncus
           mulieris FB024-16]
 gi|307614021|gb|EFN93265.1| DNA gyrase, B subunit, C-terminal domain protein [Mobiluncus
           mulieris FB024-16]
          Length = 722

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/665 (34%), Positives = 353/665 (53%), Gaps = 54/665 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y A  + +L+GL+AV+KRP+MYIG TD + GL H ++E++DN++DE+L G+ D I V 
Sbjct: 27  QDYSAHHLSVLEGLEAVRKRPAMYIGSTD-QRGLMHCLWEIIDNSVDEALAGFCDHIEVF 85

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V DNGRG+P D     G+S  EV+ T+LHAGGKF+   YKV+GGLHGVG SV
Sbjct: 86  LYPDYSAEVRDNGRGVPVDTVPGTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 145

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGS-AG 166
           VNALS+ + +++ R G+I+++ F  G                      ++ L   G  + 
Sbjct: 146 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 205

Query: 167 NDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           + TGT V F     IF     F++++L+ R R+ SFL   + I++ D R  EP+  T  +
Sbjct: 206 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLCITVTDLRGEEPQSETYLH 265

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------RDNISIDLAMRW 265
           KGG   +V +L   K       +   G+                         +D+A+RW
Sbjct: 266 KGGTVDYVEFLAPDKGITDTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVDIALRW 325

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG---SKKDKRSVIGDDC 322
             GY      + N I    GGTH+ G  +AL + + + ++ +            +  +D 
Sbjct: 326 GAGYDTVEQSYVNIIETPVGGTHVQGFETALVKTLRTEIQANSRKLKLGSKDNKIEKEDI 385

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----II 378
             G T+V+++++P+P F  QTKE L S+ V+ +V   V + L A+L     + K     +
Sbjct: 386 LAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKIQVSAL 445

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++K++     R +AR ++++TRRK  L+ ++LP KL DC   D +KSELF+VEGDSA G+
Sbjct: 446 LEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGDSALGT 505

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK  R+ E QA+ P+RGKILNV++    +ML + E   +I  +G G G+  FD+++ RY 
Sbjct: 506 AKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRT-FDLDQARYG 564

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD-EE 557
           K+I+MTDADVDGAHIRTLLLT FFR M  LI  G +Y   PPL+ I      +   +   
Sbjct: 565 KVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPGEFRY 624

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP--NHDKTFIEQ 615
           +  +  +++ L+         K  I +      +D     +  +   +      +   EQ
Sbjct: 625 TYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRLVDEQ 684

Query: 616 AVISG 620
            + + 
Sbjct: 685 PLHTA 689



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 15/180 (8%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           ++ A  +  I   S +++         ++      V    +        F      I + 
Sbjct: 539 AECAAIIQVIGAGSGRTFDLDQARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAG 598

Query: 696 RIEENYLTILSLICN------GDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEM 745
           R+      +  +  N      G+         L   +  + R G S    +QRYKGLGEM
Sbjct: 599 RVYAAVPPLHRIQVNAKGKTPGEFRYTYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEM 658

Query: 746 NASQLWETTLNPDTRSLLRVKITDAS---QADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +A QL ETT++P  R+L R+++ D      A+D+F  LMG  V PRR+FI + +  + LD
Sbjct: 659 DADQLAETTMDPQHRTLRRIRLVDEQPLHTAEDVFEVLMGSAVPPRRDFIVQGA--ARLD 716


>gi|12045055|ref|NP_072865.1| DNA topoisomerase IV, B subunit [Mycoplasma genitalium G37]
 gi|1352716|sp|P47445|PARE_MYCGE RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|3844801|gb|AAC71421.1| DNA topoisomerase IV, B subunit [Mycoplasma genitalium G37]
 gi|166078913|gb|ABY79531.1| DNA topoisomerase IV, B subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 633

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/637 (37%), Positives = 361/637 (56%), Gaps = 16/637 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y A +I+ILKGLDAVKKRP MYIG TD   GLHHM++E+L N++DE L GYA  ITV
Sbjct: 2   KSNYSATNIKILKGLDAVKKRPGMYIGSTDS-KGLHHMLWEILANSVDEVLAGYATNITV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+++ + TVSD+GRGIP ++H++  IS  + + T LHAGGKF+ +SYK++GGLHGVG S
Sbjct: 61  TLDLNNTITVSDDGRGIPYEIHQDSNISTIDTVFTFLHAGGKFDDQSYKLAGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSF-INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  L++ +KR G IY+  +   G +       G      GT V+F     +F   
Sbjct: 121 VVNALSDHLEVTVKRNGQIYQSVYQAGGKIIQKAKKIGDTT-SHGTTVSFHADPKVFKKA 179

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+ + ++ RL+ELSFL + ++++  D+++ +      F   G+  F+  ++   + L Q
Sbjct: 180 QFDSNIIKSRLKELSFLFAKLKLTFTDQKTNKTT--VFFSTSGLVQFLDEINNTVETLGQ 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             + I+G +D I +++  ++N    E +L F N+I   +GG+H +G   A++  I SY  
Sbjct: 238 KTL-IKGEKDGIEVEVVFQFNQSDQETILSFANSIKTFEGGSHENGFCLAISDVINSYCR 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR--FSSQTKEKLVSSEVRSVVESFVNDG 363
           K    K+  ++    + R+G  +++ + +P+    F  QTK KL S EV++VV   V   
Sbjct: 297 KYNLLKEKDKNFQLSEIRQGLNAIIKVNLPEKNIAFEGQTKSKLFSKEVKNVVYELVQQH 356

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422
              +LE +  +AK+I+ K+L+A  +++  ++ R+L +          L GKLA C  +  
Sbjct: 357 YFQFLERNNNDAKLIIDKLLNARKIKEQIKQQRELKKSLSSPQKEKILFGKLAPCQTKKT 416

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK-MLSSQEIGTLITAL 481
            + ELF+VEGDSAGG+AK GR R  QAILPLRGK+LNVE+    K  ++++EI TLI  +
Sbjct: 417 SEKELFIVEGDSAGGTAKMGRDRIFQAILPLRGKVLNVEKINNKKEAITNEEILTLIFCI 476

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGI   +F+I  L+Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y+  PPL
Sbjct: 477 GTGI-LTNFNIKDLKYGKIIIMTDADNDGAHIQILLLTFFYRYMQPLIELGHVYLALPPL 535

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +              LE   +   L+          G ++ + L +       ++   
Sbjct: 536 YKLETKDRKTVKYLWSDLELESVKLKLNNFTLQRYKGLGEMNADQLWDT-----TMNPTT 590

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           +          I       +F  E        + + +
Sbjct: 591 RKLVQVKLDDLINAEKQINIFMGEKSDLRKHWIEANI 627



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMNA QLW+TT+NP TR L++VK+ D   A+   +  MG++ + R+ +I+ 
Sbjct: 566 TLQRYKGLGEMNADQLWDTTMNPTTRKLVQVKLDDLINAEKQINIFMGEKSDLRKHWIEA 625

Query: 795 N 795
           N
Sbjct: 626 N 626


>gi|257054877|ref|YP_003132709.1| DNA topoisomerase IV subunit B [Saccharomonospora viridis DSM
           43017]
 gi|256584749|gb|ACU95882.1| DNA topoisomerase IV subunit B [Saccharomonospora viridis DSM
           43017]
          Length = 701

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 235/680 (34%), Positives = 337/680 (49%), Gaps = 41/680 (6%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
             + Y AD +  L+GL+AV+KRP MYIG TD   G++H+  E++DN+ DE + G+A  I 
Sbjct: 21  AENLYGADDLTHLEGLEAVRKRPGMYIGSTDS-RGVNHLFTEIVDNSTDEGVAGHATKIV 79

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL+ DGS  V D+GRGIPT  H + G+S  E+++TRLHAGGKF    YK SGGLHGVG 
Sbjct: 80  VTLHADGSVEVDDDGRGIPTGTHGKSGLSGVELVLTRLHAGGKFGGSGYKASGGLHGVGA 139

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVVTGSAGN--DT 169
           S VNALS  L + +KR+G ++EMSF  G+                + L           T
Sbjct: 140 SAVNALSLRLDVTVKRDGKVHEMSFRRGVPGIFDGPGPRAKFTPKSGLRFVRKMKRGEST 199

Query: 170 GTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT + +   +  F      + + ++ +LR  +FL   V   L         E T  Y  G
Sbjct: 200 GTTIRYWHDARYFEKGAALDPEQVRMKLRNTAFLVPGVTYVLRTATDSTINEETFHYPNG 259

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGS------------------RDNISIDLAMRWNDGYH 270
           +   V +L       +     I G                        +++A+RW  GY 
Sbjct: 260 LVDMVEFLAPAGDRPVCDTQLITGEGTYRENAADANGVMQSNVERRAEVEIALRWGTGYE 319

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK-SFGSKKDKRSVIGDDCREGFTSV 329
             V CFTN I    GGTH  G    L R +   + K     K  +   I DD  EG T+V
Sbjct: 320 RTVECFTNTIRNIHGGTHRKGFERGLVRAVHDAISKTRGLLKPKEEPPILDDVCEGLTAV 379

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE--AKIIVKKVLDASM 387
           + +++P+P+F+SQTK++L ++ +  VV+  V   + AW E        K +++K++DAS 
Sbjct: 380 VHVRIPEPQFTSQTKDELSTAGITKVVQGLVEKHIKAWAEHRRTRAEVKTVLQKIVDASR 439

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           VR A ++ +D  RRK  L+ A++P KL DC      +SELFLVEGDSA GSA+  R  E 
Sbjct: 440 VRLAQKQQKDAARRKTALEGAAMPPKLVDCRSTGVSRSELFLVEGDSALGSARLARVSEY 499

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QA+LPLRGKILNV++A   + L + EI +++  LG G G+  FDI+ +RY ++I+M DAD
Sbjct: 500 QALLPLRGKILNVQKANLSEALKNAEIASIVQVLGAGTGRT-FDISSMRYGRVILMADAD 558

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQ 566
           VDG+HIRTLL+T F R M  +I  G LY   PPL+ I T+G+  +        E      
Sbjct: 559 VDGSHIRTLLITLFARYMRPVITEGRLYAAMPPLHKIVTKGRKPETHYTYTEREMEAKVA 618

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
            L    +               +  +                    ++ A  +       
Sbjct: 619 ELERSGKQVVKPVPRFKGLGEMDADELWETTMNPATRSVRRITLDDVDAAEATLELLMGE 678

Query: 627 DQEINVSLASKLANRLNFIA 646
             E         A R+N  A
Sbjct: 679 KVEPRRKWLITSAERVNQAA 698



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 14/195 (7%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +          +++A+ +  +   + +++  S      ++      V    +    
Sbjct: 509 ILNVQKANLSEALKNAEIASIVQVLGAGTGRTFDISSMRYGRVILMADADVDGSHIRTLL 568

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT---GPCSLLDTIFSIGRKGISMQ 737
                      I   R+      +  ++  G K +         +   +  + R G   Q
Sbjct: 569 ITLFARYMRPVITEGRLYAAMPPLHKIVTKGRKPETHYTYTEREMEAKVAELERSG--KQ 626

Query: 738 ------RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
                 R+KGLGEM+A +LWETT+NP TRS+ R+ + D   A+     LMG++VEPRR++
Sbjct: 627 VVKPVPRFKGLGEMDADELWETTMNPATRSVRRITLDDVDAAEATLELLMGEKVEPRRKW 686

Query: 792 IQENSLPSA---LDI 803
           +  ++       +DI
Sbjct: 687 LITSAERVNQAAIDI 701


>gi|161506253|ref|YP_001573365.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867600|gb|ABX24223.1| hypothetical protein SARI_04448 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 630

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 218/583 (37%), Positives = 319/583 (54%), Gaps = 12/583 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L VTG+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQIYNIAFENGEKVQDLQVTGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLLHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFNGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAEQLAEMAIASAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            GK + Y   EE     L      +        KG+   N ++
Sbjct: 531 LGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 106/294 (36%), Gaps = 46/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   +++        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKN 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I+D      + +   L+  +  E RR ++QE    + LD+
Sbjct: 577 TTLDPNTRRLVQLTISDEDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLADLDV 630


>gi|321309552|ref|YP_004191881.1| DNA gyrase subunit B [Mycoplasma haemofelis str. Langford 1]
 gi|319801396|emb|CBY92042.1| DNA gyrase subunit B [Mycoplasma haemofelis str. Langford 1]
          Length = 662

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/595 (38%), Positives = 341/595 (57%), Gaps = 19/595 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y   SI++L+GL+AV++RP MYIG TD   GLHH+I+EVLDN++DE L G+AD + +TL
Sbjct: 21  NYTDSSIKVLEGLEAVRERPGMYIGSTDF-KGLHHLIWEVLDNSVDEVLAGHADEVVLTL 79

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             +   ++SDNGRGIPT ++ +  IS    + T LHAGGKF+  SYK SGGLHGVG + V
Sbjct: 80  KPNHVISISDNGRGIPTGINPQTNISNLITVFTILHAGGKFDNNSYKTSGGLHGVGSTCV 139

Query: 129 NALSSWLKLRIKREGNIYEMSFINGIL--DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           NALS ++++ + R G  + +SF NG      P +V+      TGT+VT+ P   IF   D
Sbjct: 140 NALSEFMEITVCRNGEEHFVSFKNGGKIDKEPTLVSQVPAEKTGTKVTWKPDFSIFDKSD 199

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ- 245
           ++ + ++ RL  L++LN   +    ++ S E      F+K GI  +V+ L+  +K +   
Sbjct: 200 YDVELIETRLERLAYLNKGKRFVFDNQISNEV--KEFFFKEGISDWVTNLNHSRKAINDV 257

Query: 246 ---------SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                       R    +++ISI  A ++  G    V  F NNI    GGTHL   +  L
Sbjct: 258 IFLKEDGTVKNRRTPDVQNSISISCAFQYTLGDAPIVYSFCNNIYTASGGTHLESFKDGL 317

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
              I           K+   ++  D   G T+++S+   +P +S QTKE L + E++S +
Sbjct: 318 LSCIRE-RSLEAKLIKESVDILKSDILAGLTAIVSLNYSNPEYSGQTKEVLSNIEIKSFI 376

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
              V +    +LEE+  + K I+++V     +R     AR   R+  +    S  GKLAD
Sbjct: 377 REKVEELFGRFLEENTDQCKAILQRVDQERNLRLKVEMARQTDRKLALEGFMSFAGKLAD 436

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FDKMLSSQEIG 475
           C+ +    SEL++VEGDSAGGSAK  R+RE QAILP++GK+LNV +      ++ ++EI 
Sbjct: 437 CTTKSVDFSELYVVEGDSAGGSAKSARNREYQAILPIKGKLLNVWKKTNTSSIVENEEIK 496

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           +LI+++G   G D FD  KLRY+KIIIMTDADVDG+HIR LLLTF +R M  LI  G +Y
Sbjct: 497 SLISSIGCAYG-DKFDREKLRYNKIIIMTDADVDGSHIRILLLTFIYRFMRPLIEEGHVY 555

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589
           I +PPLY     K + Y+ D++  ++++ ++  S+          G +S   L  
Sbjct: 556 IAQPPLYRAFTNKEVVYLFDDKKKDEFMADKGKSKSWEISRFKGLGEMSPEQLWQ 610



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K   + R+KGLGEM+  QLW+TT+NP+ R + +V + D  Q   +F  LMG +V PR EF
Sbjct: 590 KSWEISRFKGLGEMSPEQLWQTTMNPEERIICKVTVEDMEQVTGIFDDLMGKKVHPRTEF 649

Query: 792 IQENSLPS-ALDI 803
           I  N      LDI
Sbjct: 650 ILANYSNIRNLDI 662


>gi|108809114|ref|YP_653030.1| DNA topoisomerase IV subunit B [Yersinia pestis Antiqua]
 gi|167399281|ref|ZP_02304805.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|108781027|gb|ABG15085.1| DNA topoisomerase IV subunit B [Yersinia pestis Antiqua]
 gi|167051785|gb|EDR63193.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 631

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/649 (35%), Positives = 329/649 (50%), Gaps = 20/649 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+   I
Sbjct: 1   MTESSYNADAIEVLSGLEPVRRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHTRRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  IY ++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTEQRWCYADGLTDYLMEAVNGFITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 APFVGSFAGDTEAIDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRDF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 LTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DEE     L               KG+   N L+         +  +  
Sbjct: 530 IDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLR-------ETTLDP 582

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                 +  I    I        D  +    +    N L    + +E  
Sbjct: 583 NTRRLVQLTISDDDIDHTLAV-MDMLLAKKRSEDRRNWLQEKGDTAEIE 630



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 102/290 (35%), Gaps = 56/290 (19%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--LTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKR--IFSNRIEENYL-----------TILSLICN 710
             +    +     ++  S      +Y +  I ++   +                 +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRL--MGD------EVEPRREFIQE 794
           TTL+P+TR L+++ I+D    DD+   L  M D        E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTISD----DDIDHTLAVM-DMLLAKKRSEDRRNWLQE 622


>gi|254491811|ref|ZP_05104990.1| DNA topoisomerase IV, B subunit [Methylophaga thiooxidans DMS010]
 gi|224463289|gb|EEF79559.1| DNA topoisomerase IV, B subunit [Methylophaga thiooxydans DMS010]
          Length = 633

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 230/642 (35%), Positives = 339/642 (52%), Gaps = 13/642 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++YDA +I++L GL+ V+KRP MY   TD     +H+  EV+DN++DE++ G+A  + V
Sbjct: 2   TNTYDASAIEVLTGLEPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEAIAGHARQLQV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  VSD+GRG+P D+H EEG+   EVI+TRLHAGGKF+ K+Y+ SGGLHGVGVS
Sbjct: 58  ILHPDNSLEVSDDGRGMPVDMHPEEGVPGVEVILTRLHAGGKFSNKNYRFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS L ++I+R    Y+++F  G L   L   G+    +TGT V F P +  F   
Sbjct: 118 VVNALSSRLDVKIRRNATEYQIAFEQGALKESLTEIGTVGKRNTGTTVRFWPEASFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H LR  + L   + ++  D    E  E    Y+ G++++++     +  +  
Sbjct: 178 KFLVSRLRHVLRAKAVLCPGLIVTFTDLSGKEKVEDRWCYEDGLKSYLAVAMTDEPCVPA 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +P       D+   D A+ W     E +   + N IP   GGTH++GLRS +   +  + 
Sbjct: 238 TPFVGHVGDDSEEADWALMWQLEPGEVLAESYVNLIPTAQGGTHVNGLRSGVLEALREFC 297

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  E    VLS+K+ DP+FS QTKE+L S +    V   V D  
Sbjct: 298 EFRNLLPRG-VKLAPEDVWERCCYVLSVKLEDPQFSGQTKERLSSRQCAGFVSGVVKDSF 356

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  H  + + I    ++ +  R    +      RK V    +LPGKLADC+ +DP +
Sbjct: 357 SLWLNHHVEDGEKIADLAINNAQSRLKQAKK---VVRKRVQSGPALPGKLADCTSQDPAR 413

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQGRSRE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 414 TELFLVEGDSAGGSAKQGRSREFQAIMPLRGKILNTWEVEPTQVLASQEVHDIAVAIGVD 473

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+  LRY KI I+ DAD DGAHI TLL   F R    L+  G + +  PPLY I
Sbjct: 474 PGSD--DLAGLRYGKICILADADSDGAHIATLLCALFVRHFRPLVEAGHICVAMPPLYRI 531

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+E     ++++   E+I+    ++      ++         +    +  
Sbjct: 532 DVGKQIFYALDDEER-QIILDRIEKEKIKGKVSTQRFKGLGEMNPMQLRETTMAPDTRRL 590

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
                    +  +       +       S   +  +  +  A
Sbjct: 591 IRLTISAEDDTMMTLDKLLAKKRASDRKSWLEQHGDLADLAA 632



 Score = 83.9 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTR 760
              +    + ++ +I     +LD I     KG +S QR+KGLGEMN  QL ETT+ PDTR
Sbjct: 534 GKQIFYALDDEERQI-----ILDRIEKEKIKGKVSTQRFKGLGEMNPMQLRETTMAPDTR 588

Query: 761 SLLRVKITDASQADDLFSRL 780
            L+R+ I+     DD    L
Sbjct: 589 RLIRLTIS---AEDDTMMTL 605


>gi|153835670|ref|ZP_01988337.1| DNA topoisomerase IV, B subunit [Vibrio harveyi HY01]
 gi|148867704|gb|EDL66971.1| DNA topoisomerase IV, B subunit [Vibrio harveyi HY01]
          Length = 626

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 217/591 (36%), Positives = 326/591 (55%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+  DK + +  +       K  +   V    
Sbjct: 172 KYFDSANFSVTRLVNNLRAKAVLCPGLEITFTDKVNNKDYKWHYEDGLKDYLSEGVKGYP 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         +    N ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 VLPEEPFTGEFSAETEAANWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+K+ DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS +++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLDSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  +  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDDEKDGVLERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D++   ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSAATMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQNN 620


>gi|94957790|gb|ABF47145.1| DNA topoisomerase IV subunit B [Entomoplasma somnilux]
          Length = 551

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 245/554 (44%), Positives = 341/554 (61%), Gaps = 11/554 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
              GLHH+++E++DN+IDE+L GYA  I+V L  +GS TVSDNGRG+P  +H + G S  
Sbjct: 3   DVKGLHHLVWEIVDNSIDEALAGYATEISVILEKNGSVTVSDNGRGVPVGMH-KTGKSTP 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-IL 155
           EVI + LHAGGKF    YK SGGLHGVG SVVNALSS + + I R+  I+E+ F +G  L
Sbjct: 62  EVIFSILHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKMNITIYRDKKIWEIKFKDGGKL 121

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
              L   G+    TGT V FLP   IFS   F++ T+  RL+E + LNS ++I+L D+ +
Sbjct: 122 AQDLTEIGNT-YKTGTTVNFLPDEKIFSATKFSFSTIAERLKESALLNSGLKITLKDEHA 180

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +  E     + G++ FV  L    KP + +PI + G    I +++ M++ + Y+E VL 
Sbjct: 181 DKFIEYQF--ENGLQEFVKELAEDFKP-ITTPITLTGENSKIEVEICMQYTEDYNETVLG 237

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NN+   DGGTH++G +  L + +  Y + S   K     +  +D REG  +V+++K+P
Sbjct: 238 FANNVKTGDGGTHITGFKIGLVKAMNDYAKSSKILKDKDPRLDSNDLREGLIAVVTVKVP 297

Query: 336 DP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +   ++  QTK KL + E R   ES   +  + WL+E+  +A  I++K L A   RD AR
Sbjct: 298 ENLIQYEGQTKGKLGTVEARVATESITYNYFNFWLQENKAQATKIIEKALLARKARDEAR 357

Query: 394 RARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           +AR   R  KG +   ++ GKL     R  + +EL+LVEGDSAGGSAK GR R  QAILP
Sbjct: 358 KARQAIRDSKGKIKGKTMLGKLTPAQGRKKENNELYLVEGDSAGGSAKSGRDRTFQAILP 417

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGK++N E+A+   +L ++EI T+ITA+G GIG D FDI  + Y KIIIMTDAD DGAH
Sbjct: 418 LRGKVINSEKAKLVDLLKNEEINTIITAIGAGIGSD-FDIKDINYGKIIIMTDADTDGAH 476

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEE 571
           I+TLLLTFFFR M  LI N  +YI  PPLY I    K +QY+ DE  L D++ N S   E
Sbjct: 477 IQTLLLTFFFRYMKDLIINHNIYIALPPLYKITFSDKKIQYLWDENELADFMENTSKKFE 536

Query: 572 IELFCDSKGVISKN 585
           I+ +     + +  
Sbjct: 537 IQRYKGLGEMNADQ 550



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 2/131 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  + +++    ++   +  I       +     N   ++           +    
Sbjct: 422 VINSEKAKLVDLLKNEEINTIITAIGAGIGSDFDIKDINYGKIIIMTDADTDGAHIQTLL 481

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRY 739
             F F      I ++ I      +  +  +  KI+ +     L D + +  +K   +QRY
Sbjct: 482 LTFFFRYMKDLIINHNIYIALPPLYKITFSDKKIQYLWDENELADFMENTSKK-FEIQRY 540

Query: 740 KGLGEMNASQL 750
           KGLGEMNA QL
Sbjct: 541 KGLGEMNADQL 551


>gi|292486926|ref|YP_003529796.1| DNA topoisomerase IV subunit B [Erwinia amylovora CFBP1430]
 gi|292900680|ref|YP_003540049.1| topoisomerase IV subunit B [Erwinia amylovora ATCC 49946]
 gi|291200528|emb|CBJ47657.1| topoisomerase IV subunit B [Erwinia amylovora ATCC 49946]
 gi|291552343|emb|CBA19388.1| DNA topoisomerase IV, B subunit [Erwinia amylovora CFBP1430]
 gi|312170996|emb|CBX79255.1| DNA topoisomerase IV, B subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 631

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 225/585 (38%), Positives = 321/585 (54%), Gaps = 12/585 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+ADSI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNADSIEVLSGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGHAKRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I  RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHPDQSLEVIDDGRGMPVDIHPEEGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R   +YEM+F NG     L VTG+ A  +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRNAEVYEMAFENGDKVQDLTVTGTVAKRNTGTRVQFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQLNKTEQSWCYADGLTDYLMEAVNGLPLLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + +     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 KPFVGAFSGDVEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+++ +  + ++       RA     RK +    +LPGKLADCS +D  
Sbjct: 355 FSLWLNQNVQAAEMLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCSAQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  GK + Y  DEE     L      +        KG+   N L+
Sbjct: 530 IDLGKEVYYALDEEEKAGILEQLKRKKGKPGVQRFKGLGEMNPLQ 574



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 98/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEMLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCSAQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LSR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKN 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + GI            +QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGILEQLKRKKGKPGVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D +Q   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTISDEDVNQTLAVMDMLLAKKRSEDRRNWLQE 622


>gi|312914206|dbj|BAJ38180.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 630

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/583 (36%), Positives = 317/583 (54%), Gaps = 12/583 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFNGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAEQLAEMAIASAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF VEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFFVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            GK + Y   EE     L      +        KG+   N ++
Sbjct: 531 LGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 105/294 (35%), Gaps = 46/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   +++        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F  +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFFVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKN 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I+D      + +   L+  +  E RR ++QE    + LD+
Sbjct: 577 TTLDPNTRRLVQLTISDEDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLADLDV 630


>gi|156973195|ref|YP_001444102.1| DNA topoisomerase IV subunit B [Vibrio harveyi ATCC BAA-1116]
 gi|156524789|gb|ABU69875.1| hypothetical protein VIBHAR_00875 [Vibrio harveyi ATCC BAA-1116]
          Length = 626

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 217/591 (36%), Positives = 326/591 (55%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+  DK + +  +       K  +   V    
Sbjct: 172 KYFDSANFSVTRLVNNLRAKAVLCPGLEITFTDKVNNKDYKWHYEDGLKDYLAEGVKGYP 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         +    N ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 VLPEEPFTGEFSAETEAANWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+K+ DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS +++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLDSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  +  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDDEKDGVLERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D+    ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSVATMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQNN 620


>gi|167077365|gb|ABZ10904.1| DNA gyrase subunit B [Burkholderia stabilis]
          Length = 630

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 275/634 (43%), Positives = 390/634 (61%), Gaps = 20/634 (3%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALSSWL+L ++R G    M F  GI              +P++VTG    + GT
Sbjct: 1   GVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTE-NRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ 
Sbjct: 60  EVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYINKTKTNLHPTIFFATGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 178 LRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LP
Sbjct: 238 VRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS
Sbjct: 298 GKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  
Sbjct: 358 EQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIER 417

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++  VIS + L    
Sbjct: 418 GYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAVISGDALGELA 477

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              L    +I      +D   +E  +     +  S++    + A  L   L+  A K+E 
Sbjct: 478 RSYLLSRSVIDRLSRLYDPAALEAIMDGVAIDL-SNEASTEASAKALHTALHDEALKNEV 536

Query: 652 S----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +        + V+R   G     V++     +   +     +N           +
Sbjct: 537 RVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVATANTFTGLIGEGAVI 596

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
                 + ++   S +  + +   + +S QRYKG
Sbjct: 597 KRGERSMAVSDFKSAMKWLLADAERNVSKQRYKG 630


>gi|238755475|ref|ZP_04616815.1| DNA topoisomerase 4 subunit B [Yersinia ruckeri ATCC 29473]
 gi|238706316|gb|EEP98693.1| DNA topoisomerase 4 subunit B [Yersinia ruckeri ATCC 29473]
          Length = 631

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/585 (38%), Positives = 316/585 (54%), Gaps = 12/585 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I  RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHADQSLEVIDDGRGMPVDIHPEEGVPAIELIFCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G +Y M+F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSRRVEVNVRRDGQVYSMAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D  +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDLLNNTEQRWCYADGLTDYLMEAVNGLITLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +       G  + I     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 VPFVGSFAGDTEAIDW-ALLWLPEGGDLLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEFRNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R   SL+  G +Y+  PPLY 
Sbjct: 470 GIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFSSLVRGGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  GK + Y  DEE     L               KG+   N L+
Sbjct: 530 IDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQ 574



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 99/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKR--IFSNRIEENYL-----------TILSLICN 710
             +    +     ++  S      +Y +  I ++   +                 SL+  
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFSSLVRG 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRKRGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKIT--DASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ +   D  +   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTVDDSDIEKTMAVMDMLLAKKRSEDRRNWLQE 622


>gi|88859081|ref|ZP_01133722.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas tunicata D2]
 gi|88819307|gb|EAR29121.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas tunicata D2]
          Length = 629

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/569 (38%), Positives = 328/569 (57%), Gaps = 14/569 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N  Y+A+SI++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MSNQDYNAESIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHASKI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHEDNSLEVQDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ +KR+G  Y+++F NG     L +TG+    +TGT V F   S  F 
Sbjct: 117 ISVVNALSTRVEVSVKRDGQQYQIAFENGDKVEDLSITGTVGKRNTGTSVRFWADSSYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++   L + L+  + L   ++I  I+K++ + +E     + G++ ++    +  + L
Sbjct: 177 SPNYSISKLTYLLKAKAVLCPGLRIRFINKQTKDTQEWFY--EAGLKDYLKESIKGYEAL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P   +   +    D A+ W  +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEEPFTGEFRGNTEGADWAICWLPEGGEGIYESYVNLIPTAQGGTHVNGLRQGLLEAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  +    VLS+KM DP+F+ QTKEKL S    + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTPDDIWDKCNYVLSVKMQDPQFAGQTKEKLSSRSCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL EH  +A+++ +  ++ +       RA     RK +    +LPGKL DCS  + 
Sbjct: 354 SFSLWLNEHTDKAELLAELCINNAQ---RRMRAAKKVVRKKITSGPALPGKLTDCSTSET 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SE+F VEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  ++ 
Sbjct: 411 SRSEIFFVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+  LRY K+ I+ DAD DG HI TLL   F +  P+L+  G +++  PPLY
Sbjct: 469 LGIDPDSQDLTTLRYGKVCILADADSDGLHIATLLCALFVKHFPTLVEAGHVFVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE 571
            I  GK + Y  DE+     L   +  ++
Sbjct: 529 RIDLGKDVYYALDEDEKNGILERITAEKK 557



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ I +  ++G +++QR+KGLGEMN  QL ETT++P+TR L+++   D     ++   L
Sbjct: 548 ILERITAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTFEDKENTIEMMDML 607

Query: 781 MGDEVEP-RREFIQE 794
           +  +  P RR+++++
Sbjct: 608 LAKKRAPDRRQWLED 622


>gi|152997556|ref|YP_001342391.1| DNA topoisomerase IV subunit B [Marinomonas sp. MWYL1]
 gi|150838480|gb|ABR72456.1| DNA topoisomerase IV, B subunit [Marinomonas sp. MWYL1]
          Length = 632

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/558 (39%), Positives = 327/558 (58%), Gaps = 12/558 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y+A SI++L GL+ V+KRP MY   TD     +H+  EV+DN++DE+L  +AD I
Sbjct: 1   MSAKEYNAGSIEVLSGLEPVQKRPGMY---TDTSRP-NHLAQEVIDNSVDEALASHADRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS +V DNGRG+P D+H EEGIS  E+I+T+LHAGGKF+  +Y+ SGGLHGVG
Sbjct: 57  EVILYKDGSLSVEDNGRGMPVDIHPEEGISGVELILTKLHAGGKFSGDNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSVVNALS+ L++ ++R G  Y + F NG   + L   G+    +TGT+V F   S  F 
Sbjct: 117 VSVVNALSTSLEVWVRRNGIQYHIGFENGFKTSELKEIGTVGKKNTGTKVKFTADSKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H L+  + L S + +  ID+   E      F++ G++ +++  +     L
Sbjct: 177 NPKFSISRLKHLLKAKAVLCSGLHVVFIDQTGSEEAREEWFFQDGLKDYLAQANDGFVLL 236

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     +     +D A++W  +G       + N IP   GGTH++GLR+ L   I  
Sbjct: 237 PDEPFIGGLTEKTQGVDWAVQWLPEGGELVTESYVNLIPTAQGGTHVNGLRTGLLEAIRE 296

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + +      +    +  +D  +  + VLS K+ +P+FS QTKE+L S ++ + + + V D
Sbjct: 297 FCDFHNLLPRG-VKLTAEDVWDRCSYVLSAKIQEPQFSGQTKERLSSRQIVAFISATVKD 355

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL  H  + K I   V++++  R    +      RK V    +LPGKLADCS +D 
Sbjct: 356 SFSLWLNSHVEDGKKIADIVINSAQKRLKDSKK---VVRKRVTQGPALPGKLADCSGQDS 412

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      +++L+SQEI  +  ALG
Sbjct: 413 SRSELFLVEGDSAGGSAKQAREKDFQAILPLRGKILNTWEVDSNQVLASQEIHDISVALG 472

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
              G +  D++ LRY K+ I+ DAD DG HI TL+   F R  P+L+++G +++  PPLY
Sbjct: 473 VDPGDE--DLSGLRYGKVCILADADSDGLHIATLICALFVRHFPALVNSGHVFVAMPPLY 530

Query: 543 GITRGKSLQYVKDEESLE 560
            I  GK + Y  D+E  +
Sbjct: 531 RIDIGKEVYYALDDEEKD 548



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 15/99 (15%)

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGI-SMQRYKGLGEMNASQLWETTLNPDTR 760
              +    + ++  IT     L  I +  ++G  ++QR+KGLGEMN SQL ETT+ PDTR
Sbjct: 535 GKEVYYALDDEEKDIT-----LHKIAAENKRGTPNVQRFKGLGEMNPSQLRETTMAPDTR 589

Query: 761 SLLRVKITDASQADDLFSRLM-----GDEVEPRREFIQE 794
            L+++ + D    ++L  +L+     GD    R+ +++ 
Sbjct: 590 RLIQLTMEDKPDTNELLDKLLSKKRAGD----RKSWLET 624


>gi|304413731|ref|ZP_07395175.1| DNA topoisomerase IV subunit B [Candidatus Regiella insecticola
           LSR1]
 gi|304283822|gb|EFL92216.1| DNA topoisomerase IV subunit B [Candidatus Regiella insecticola
           LSR1]
          Length = 647

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/651 (35%), Positives = 336/651 (51%), Gaps = 22/651 (3%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            + +S+Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN+IDE+L GYA  
Sbjct: 17  KMNHSNYNADAIEVLSGLEPVRRRPGMY---TDTSRP-NHLGQEVIDNSIDEALAGYAHR 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L+ D S ++SD+GRG+P DLH EEG+ A E+I+ RLHAGGKF+ KSY+ SGGLHGV
Sbjct: 73  INVILHADQSLSISDDGRGMPVDLHPEEGVPAIELILCRLHAGGKFSNKSYQFSGGLHGV 132

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSDIF 182
           G+SVVNALS  L++ ++R G IY + F  G     L + G    + TGT V F P +  F
Sbjct: 133 GISVVNALSRRLEVTVQRNGKIYRIVFEQGNKVQDLQIIGTCTKSHTGTHVHFWPDASFF 192

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+   L H L+  + L   ++I   D+ +   +        G+  ++         
Sbjct: 193 DSPRFSVSRLSHLLKAKAVLCPGIKICFKDEVNNTEQRWCY--ADGLTDYLMESVNGLIT 250

Query: 243 LMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           L + P     S    +ID A +   +G       + N IP   GGTH++GLR  +   + 
Sbjct: 251 LPKKPFIGTFSAATEAIDWALLWLPEGGELLTESYVNLIPTIQGGTHVNGLRQGVLDAMR 310

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  +     V 
Sbjct: 311 EFCEFCNILPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFASGIVK 369

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL ++   A+ + + V+  +       RA     RK ++   +LPGKLADCS  +
Sbjct: 370 DTFSLWLHKNRSTAEQLAEFVVSNAQ---RRLRAAKKVVRKKLMSGPALPGKLADCSSNE 426

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++
Sbjct: 427 LSLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNSWEIASDEILASQEVHDI--SV 484

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
             GI  D+ D+++LRY KI I+ DAD DG HI  LL   F R   SL+ +G +Y+  PPL
Sbjct: 485 AIGIDPDNEDLSQLRYGKICILADADSDGLHIAALLCALFVRHFRSLVRDGRIYVAMPPL 544

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I  GK + Y  DEE     L               KG+   N L+         +  +
Sbjct: 545 YRIDLGKEVFYALDEEEKTGILEQLQRKRGKPNVQRFKGLGEMNPLQLR-------ETTL 597

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                   +  I+   +        D  +    A    N L      +E  
Sbjct: 598 DPNTRRLVQLTIDDDNMDHTLAI-MDMLLAKKRAEDRRNWLQEKGNLAEIE 647



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 98/286 (34%), Gaps = 48/286 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +     ++    S  + L    +S        +K V+ K  +          D    +
Sbjct: 367 IVKDTFSLWLHKNRSTAEQLAEFVVSNAQRRLRAAKKVVRKKLMSGPALPGKLADCSSNE 426

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             I + +IL
Sbjct: 427 LS--LTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------SWEIASDEIL 474

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  +      +Y +I             +  +   ++     +   
Sbjct: 475 ASQEVHDISVAIGIDPDNEDLSQLRYGKICILADADSDGLHIAALLCALFVRHFRSLVRD 534

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
            +I +  P          +   +    + GI           ++QR+KGLGEMN  QL E
Sbjct: 535 GRIYVAMPPLYRIDLGKEVFYALDEEEKTGILEQLQRKRGKPNVQRFKGLGEMNPLQLRE 594

Query: 753 TTLNPDTRSLLRVKITDASQADD---LFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D    D    +   L+  +  E RR ++QE
Sbjct: 595 TTLDPNTRRLVQLTIDD-DNMDHTLAIMDMLLAKKRAEDRRNWLQE 639


>gi|325962992|ref|YP_004240898.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV)
           subunit beta [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469079|gb|ADX72764.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Arthrobacter phenanthrenivorans Sphe3]
          Length = 702

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 239/665 (35%), Positives = 343/665 (51%), Gaps = 57/665 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I +
Sbjct: 4   SSDYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGFGHDIKI 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  + D+GRGIP D   + G++  EV+ T+LHAGGKF   SY  SGGLHGVG S
Sbjct: 63  ILHADNSVEIHDDGRGIPIDKEPKTGLTGVEVVFTKLHAGGKFGGGSYTASGGLHGVGAS 122

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGIL---------------------DNPLVVTGSA 165
           VVNALSS L + + R G  Y+MSF  G                       D+ L + G A
Sbjct: 123 VVNALSSRLDVEVDRGGKTYKMSFRRGEPGRFQDTGSKSDPAAPFTPFVDDSVLDIVGKA 182

Query: 166 GN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------SP 216
               TGT + +     IF     F+YD L  R R+ SFL   +++++ D+R         
Sbjct: 183 KRGVTGTRIRYWADRQIFTPDAKFSYDELAARARQTSFLVPGLKLTVRDERRIPGTPGEA 242

Query: 217 EPREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDN---------I 257
              E    + GGI  FV +             H     +  + +   R +          
Sbjct: 243 GVHEEVFHHDGGISEFVEFLAADPAVTDVWRLHGSGKFKETVPVLDERGHSQLAEVERDC 302

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRS 316
            +D+A+RW  GY   V  F N I    GGTH SG   AL +     VE +    K     
Sbjct: 303 EVDVALRWGIGYESTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVESNARKLKAGNDK 362

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           +  DD   G T+VL++++ +P+F  QTKE L +S VR++V   V   +SA L       K
Sbjct: 363 IEKDDIFAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVAKVVEREISAKLSSANRNDK 422

Query: 377 I----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +++K+++    R +AR  ++  RRK  L+ +S+P KLADC   D  +SELF+VEG
Sbjct: 423 AQSALLLEKIVNEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVDRSELFIVEG 482

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSA G+AK  RS + QA+LP+RGKILNV++A    MLS+ E   LI  +G G G+  FD+
Sbjct: 483 DSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRS-FDL 541

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
              RY K+I+MTDADVDGAHIRTLLLT FFR M  +I  G ++   PPL+ +    + Q 
Sbjct: 542 AAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIEEGRVFAAVPPLHRVEVINAGQK 601

Query: 553 VKDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
             +      +  ++  L+   +     K  I +      +D     +  +   +    K 
Sbjct: 602 ANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRKV 661

Query: 612 FIEQA 616
            IE A
Sbjct: 662 GIENA 666



 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 56/82 (68%), Gaps = 3/82 (3%)

Query: 722 LLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LL  +   G++    +QRYKGLGEM+A QL ETT++P  R+L +V I +A QA+++F  L
Sbjct: 617 LLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRKVGIENAKQAEEIFDLL 676

Query: 781 MGDEVEPRREFIQENSLPSALD 802
           MG +V PR++FI   +  ++LD
Sbjct: 677 MGSDVSPRKDFIIAGA--ASLD 696


>gi|94500377|ref|ZP_01306909.1| DNA topoisomerase IV, B subunit [Oceanobacter sp. RED65]
 gi|94427412|gb|EAT12390.1| DNA topoisomerase IV, B subunit [Oceanobacter sp. RED65]
          Length = 631

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/555 (42%), Positives = 321/555 (57%), Gaps = 14/555 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A SI++L GLD V+KRP MY   T+     +H+  EV+DN++DE+L G+ + IT+ 
Sbjct: 2   SNYTAQSIEVLSGLDPVRKRPGMY---TETTRP-NHLAQEVIDNSVDEALAGHCNHITIE 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+DNGRG+PTD+H E G+S  E+I+T+LHAGGKF+  +Y+ SGGLHGVGVSV
Sbjct: 58  LFADQSLAVTDNGRGMPTDIHPEHGVSGVELILTKLHAGGKFSNDNYQFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--DTGTEVTFLPSSDIFSVQ 185
           VNALS  L++ I R G I  ++F +G     L   G      DTGT V FLP +  F   
Sbjct: 118 VNALSKALEVTIHRNGEIMRIAFQDGEKAIDLEKIGETKRKKDTGTTVRFLPDAKYFDSH 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L   + I  I+  + +  E    Y+ G+  +++   +  + L Q
Sbjct: 178 KFSVPRLKHVLRAKAVLCPGLTIEFINHGNKDDNEKWF-YEDGLIDYLTESTKGYETLPQ 236

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     S +  ++D A++W  +G  + +  + N IP   GGTH++GLR+ L   +  + 
Sbjct: 237 EPFEGSMSGNTEAVDWAVQWLPEGGEQLMESYVNLIPTAQGGTHVNGLRTGLLEALREFC 296

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +    VLS K+ DP+FS QTKE+L S E  + V   V D  
Sbjct: 297 EFRNLLPRG-VKLTPDDVWDKVAFVLSAKLADPQFSGQTKERLSSREAAAFVSGVVKDSF 355

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL EH    + I + V+  +       R+     RK V    +LPGKLADC+  DP  
Sbjct: 356 SLWLNEHSSLGERIAEMVISNAQ---RRMRSAKKVVRKKVTQGPALPGKLADCASNDPAY 412

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELFLVEGDSAGGSAKQ RSR+NQAI+PLRGKILN       ++L+SQEI  +  ALG  
Sbjct: 413 SELFLVEGDSAGGSAKQARSRDNQAIMPLRGKILNSWEVASTEVLASQEIHDISVALGMD 472

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D++ LRY KI I+ DAD DG HI TLL   F +  P+L+  G +Y+  PPLY I
Sbjct: 473 PGSD--DLSNLRYGKICILADADSDGLHIATLLCALFVKHFPALVRAGHVYVAMPPLYRI 530

Query: 545 TRGKSLQYVKDEESL 559
             GK + Y  DE   
Sbjct: 531 DVGKDVYYALDEAER 545



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG I++QR+KGLGEMN  QL ETT++PDTR L+++ I +    +++   L
Sbjct: 548 VLDRIQAEKKKGKINVQRFKGLGEMNPLQLRETTMDPDTRRLVQLSIEEGDDTNEMMDLL 607


>gi|77361502|ref|YP_341077.1| DNA topoisomerase IV subunit B [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876413|emb|CAI87635.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 629

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/642 (35%), Positives = 336/642 (52%), Gaps = 18/642 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y+A++I++L GLD VK+RP MY   TD     +H+  EV+DN++DE++ G+A  I
Sbjct: 1   MSQQNYNAEAIEVLNGLDPVKRRPGMY---TDTSRP-NHLGQEVIDNSVDEAMAGHATRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  VSD+GRG+P D+H EEGI   E+I T+LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILHEDNSLEVSDDGRGMPIDIHPEEGIPGVELIFTKLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ ++R+   Y M+F NG     L V G     +TGT V F P    F 
Sbjct: 117 ISVVNALSTRVEVTVRRDAQQYRMAFENGEKVEDLSVIGVVGKRNTGTTVRFWPDVSYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++   L H L+  + L   ++I  ++K++ E +E       G++ ++    +  + L
Sbjct: 177 SPNYSITKLNHLLKAKAVLCPGLRIKFVNKQTKETQEWFYET--GLKDYLIEAIKGYETL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P   + S      D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PDVPFVGEFSSSIEGADWALIWLPEGGESIAESYVNLIPTAQGGTHVNGLRQGLLEAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E  + VLS+KM DP+F+ QTKEKL S    + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRSCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL EH   A+ + +  +  +       RA     RK V    +LPGKL DCS  D 
Sbjct: 354 SFSLWLNEHTDIAEQLSELCISNAQ---RRLRAAKKVIRKRVTAGPALPGKLTDCSAADN 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  ++ 
Sbjct: 411 DRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSGQILASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+  LRY+KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPL+
Sbjct: 469 LGIDPDSDDLTALRYNKICILADADSDGLHIATLLCALFVRHFKPLVKAGHVYVAMPPLF 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DE+     L      ++       +           + +   +D   +
Sbjct: 529 RIDIGKDVYYALDEDEKTGILARIEAEKKRGKVNVQRFKGLGEMNPLQLRE-TTMDPNTR 587

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                   T  E+ +   + +    ++ +      L +  N 
Sbjct: 588 RL---VQLTLDEEELTMEMMDMLLAKKRSADRRQWLEDHGNK 626



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L  I +  ++G +++QR+KGLGEMN  QL ETT++P+TR L+++ + +     ++   L
Sbjct: 548 ILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTLDEEELTMEMMDML 607

Query: 781 MGDE-VEPRREFIQENSLPS 799
           +  +    RR++++++   +
Sbjct: 608 LAKKRSADRRQWLEDHGNKA 627


>gi|152971961|ref|YP_001337070.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896538|ref|YP_002921278.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae NTUH-K2044]
 gi|262042299|ref|ZP_06015464.1| DNA topoisomerase IV [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330008928|ref|ZP_08306334.1| DNA topoisomerase IV, B subunit [Klebsiella sp. MS 92-3]
 gi|150956810|gb|ABR78840.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238548860|dbj|BAH65211.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259040363|gb|EEW41469.1| DNA topoisomerase IV [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328535028|gb|EGF61552.1| DNA topoisomerase IV, B subunit [Klebsiella sp. MS 92-3]
          Length = 631

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/643 (34%), Positives = 333/643 (51%), Gaps = 17/643 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G +Y ++F NG     L VTG+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVNVRRDGQVYSIAFENGEKVEDLHVTGTCGKRNTGTSVHFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +              +       P 
Sbjct: 177 SPRFSVSRLTHLLKAKAVLCPGVEIVFRDQVNNSEQSWCYADGLNDYLSEAVNGLPLLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + +     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 KPFVGAFSGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAELLAEMAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLN 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY 
Sbjct: 470 GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y   EE     L      +        KG+   N ++        +D   + 
Sbjct: 530 IDLGKEVYYALTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQ---LRETTLDPNTRR 586

Query: 604 FYPNHDKTFIEQ--AVISGVFNCESDQEINVSLASKLANRLNF 644
                     EQ    I  +   +   E   +   +  +  + 
Sbjct: 587 LVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQEKGDMADL 629



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 98/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAELLAEMAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKE 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVALPPLYRIDLGKEVYYALTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q   +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQE 622


>gi|256823223|ref|YP_003147186.1| DNA topoisomerase IV subunit B [Kangiella koreensis DSM 16069]
 gi|256796762|gb|ACV27418.1| DNA topoisomerase IV, B subunit [Kangiella koreensis DSM 16069]
          Length = 629

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/654 (35%), Positives = 341/654 (52%), Gaps = 34/654 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + N+ Y A+SI++L GLD VKKRP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MANNQYTAESIEVLSGLDPVKKRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHAKTI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ D S  V D+GRG+P D+H EEGI   E+IM++LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  KVTLHKDSSLEVEDDGRGMPVDIHPEEGIPGVELIMSKLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ +KR+GN Y M+F +G     L V       +TGT V F P S  F 
Sbjct: 117 ISVVNALSKRVEVTVKRDGNQYFMAFEDGFKVKDLEVVAEVGKRNTGTSVKFWPDSKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H L+  + L   +++   +K + E       Y+ G+ A++       + L
Sbjct: 177 SDKFSISRLKHLLKAKAILCPGLKVVFDNKAAGEQ--DEWLYEDGLTAYLLEQAGGFERL 234

Query: 244 MQSPIRIQGSRDNISIDL-AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P       +  ++D   M   +G       + N IP   GGTH++GLR+ L   +  
Sbjct: 235 PEEPFTGSLQGEAEAVDWAFMWLPEGGECLAESYVNLIPTPQGGTHVNGLRNGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +  + VLS+K+ DP+FS QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLSAEDVWDRISYVLSVKLDDPQFSGQTKERLSSRQCATFVAGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++P+    + ++ +  +       RA     RK V    +LPGKLADC+  D 
Sbjct: 354 AFSLWLNQNPVIGDALAERAISNAH---KRMRASKKIVRKKVTQGPALPGKLADCAGTDA 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN      +++L+SQE+  +  A+G
Sbjct: 411 MSSELFLVEGDSAGGSAKQARDKEYQAIMPLRGKILNTWEVDSNQILASQEVHDISVAIG 470

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
                 S D++KLRY K+ I+ DAD DG HI TLL   F R    L+  G +++  PPLY
Sbjct: 471 LDP--SSDDLSKLRYGKVCILADADSDGLHIATLLCALFVRHFRPLVRAGHVFVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
            I  GK + Y  DE+      +         +         G ++   LR         +
Sbjct: 529 RIDVGKEVFYALDEDEKQGLLDRIKAENKRGKIQVQRFKGLGEMNPKQLR---------E 579

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSE 650
             +           + Q  + G    E   +  ++   AS     L     K+E
Sbjct: 580 TTMARETRR-----LVQLTLGGDGEAEHIMDMLLSKKRASDRKEWLELKGNKAE 628



 Score = 90.8 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I +  ++G I +QR+KGLGEMN  QL ETT+  +TR L+++ +    +A+ +   L
Sbjct: 548 LLDRIKAENKRGKIQVQRFKGLGEMNPKQLRETTMARETRRLVQLTLGGDGEAEHIMDML 607


>gi|116670180|ref|YP_831113.1| DNA topoisomerase IV subunit B [Arthrobacter sp. FB24]
 gi|116610289|gb|ABK03013.1| DNA topoisomerase IV subunit B [Arthrobacter sp. FB24]
          Length = 702

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 240/665 (36%), Positives = 341/665 (51%), Gaps = 57/665 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I +
Sbjct: 4   SSDYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGFGHDIKI 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  + D+GRGIP D+  + G++  EV+ T+LHAGGKF   SY  SGGLHGVG S
Sbjct: 63  ILHADNSVEIHDDGRGIPIDVEPKTGLTGVEVVFTKLHAGGKFGGGSYTASGGLHGVGAS 122

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGIL-------DNP--------------LVVTGSA 165
           VVNALSS L + + R G  Y+MSF  G           P              L V G A
Sbjct: 123 VVNALSSRLDVEVDRGGKTYKMSFRRGEPGRFKDPGTKPDPAAAFEPFVNDSVLDVVGKA 182

Query: 166 GN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------SP 216
               TGT + +     IF     F+YD L  R R+ SFL   +++++ D+R         
Sbjct: 183 KRGVTGTRIRYWADRQIFTPDAKFSYDELAARARQTSFLIPGLKLTVRDQRRIAGTPGEL 242

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-------------------RDNI 257
              E    + GGI  FV +L           +   G                      + 
Sbjct: 243 AGHEEIFHHDGGISEFVDFLAADPAVTDTWRLHGSGKFKETVPVLDERGHSQLAEVERDC 302

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRS 316
            +D+A+RW  GY   V  F N I    GGTH SG   AL +     VE +    K     
Sbjct: 303 EVDVALRWGIGYDSTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVETNARKLKAGNDK 362

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           +  DD   G T+VL++++ +P+F  QTKE L +S VR++V   V   ++A L       K
Sbjct: 363 IEKDDIFAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVARVVEKEINAKLNSANRNDK 422

Query: 377 I----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +++K++     R +AR  ++  RRK  L+ +S+P KLADC   D  +SELF+VEG
Sbjct: 423 AQSALLLEKIVSEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVARSELFIVEG 482

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSA G+AK  RS + QA+LP+RGKILNV++A    MLS+ E   LI  +G G G+  FDI
Sbjct: 483 DSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRS-FDI 541

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
           +  RY K+I+MTDADVDGAHIRTLLLT FFR M  +I  G ++   PPL+ +    + Q 
Sbjct: 542 SAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVEVINAGQK 601

Query: 553 VKDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
             +      +  ++  L+   +     K  I +      +D     +  +   +    K 
Sbjct: 602 ANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRKV 661

Query: 612 FIEQA 616
            IE A
Sbjct: 662 GIENA 666



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 722 LLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LL  +   G++    +QRYKGLGEM+A QL ETT++P  R+L +V I +A QA++ F  L
Sbjct: 617 LLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRKVGIENAKQAEETFDLL 676

Query: 781 MGDEVEPRREFI 792
           MG +V PR++FI
Sbjct: 677 MGSDVAPRKDFI 688


>gi|329298650|ref|ZP_08255986.1| DNA topoisomerase IV subunit B [Plautia stali symbiont]
          Length = 631

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/586 (38%), Positives = 335/586 (57%), Gaps = 14/586 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MSQSSYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R G IY+++F NG     + V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRNGEIYQIAFENGDKVQDMAVIGTVGKRNTGTSVHFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H L+  + L   V+I   DK +   +  T  Y+ G+  +++        L
Sbjct: 177 SPRFSVSRLKHLLKAKAVLCPGVEIVFKDKVNDTEQ--TWLYQDGLTDYLNEAVNGLPTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFVGSFAGDVEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V + V D
Sbjct: 295 FCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSAVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEMLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   SL+  G +Y+  PPLY
Sbjct: 469 IGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVRQGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I  GK + Y  DE+  E  L      +        KG+   N L+
Sbjct: 529 RIDLGKEVYYALDEDEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQ 574



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 11/84 (13%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDAS 771
            LD     G       +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ +   D  
Sbjct: 539 ALDEDEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTVDEEDVE 598

Query: 772 QADDLFSRLMGDE-VEPRREFIQE 794
           Q   +   L+  +  E RR ++QE
Sbjct: 599 QTLRMMDMLLAKKRSEDRRNWLQE 622


>gi|288940508|ref|YP_003442748.1| DNA topoisomerase IV subunit B [Allochromatium vinosum DSM 180]
 gi|288895880|gb|ADC61716.1| DNA topoisomerase IV, B subunit [Allochromatium vinosum DSM 180]
          Length = 634

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/568 (39%), Positives = 319/568 (56%), Gaps = 19/568 (3%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           YDA +I++L+GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I+VTL+
Sbjct: 5   YDASAIEVLQGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKRISVTLH 60

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS  V D+GRG+P D+H +EG    EVI+T+LHAGGKFN  +Y+ SGGLHGVGVSVVN
Sbjct: 61  ADGSLEVEDDGRGMPVDIHPQEGRPGVEVILTKLHAGGKFNSDNYRFSGGLHGVGVSVVN 120

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFN 188
           ALS  L++ +KR G  Y M+F +G   + L V G+   ND GT + F P    F    F 
Sbjct: 121 ALSRHLEVWVKRGGQEYNMAFKDGNKVSDLDVVGTVKRNDRGTRLRFWPDPGYFDSPKFA 180

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
              L H L+  + L   +++   D+ S E +      + G++ ++       + L   P 
Sbjct: 181 VRPLTHLLQAKAVLCPGLEVRFRDETSGEEQVWCY--QDGLQDYLLQSLSGVETLPSEPF 238

Query: 249 RIQGSRDNISIDLAMRW------NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                    +   A+ W        G       + N IP   GGTH++GLR+ LT  +  
Sbjct: 239 VGDMEGRTEAASWALVWLPEPIRAGGGEPIAESYVNLIPTVQGGTHVNGLRTGLTEAVRE 298

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D     + +LS+K+ DP+FS QTKE+L S E  + V   V D
Sbjct: 299 FCEFRNLLPRG-VKLAPEDVWNRVSYILSVKLLDPQFSGQTKERLSSRECAAFVSGVVKD 357

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL +H  E + I +  + A+  R  A        RK +    +LPGKLADC+  DP
Sbjct: 358 SFSLWLNQHVAEGERIAELAIGAAQARLRAG---RTVTRKKITQGPALPGKLADCTATDP 414

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           ++ ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      +++L+SQE+  +  A+G
Sbjct: 415 ERGELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEVAPEEVLASQEVHDIAVAIG 474

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
              G D  D+++LR+ KI I+ DAD DGAHI TLL   F +    L+  G +Y+  PPLY
Sbjct: 475 VDPGSD--DLSRLRFGKICILADADSDGAHIATLLCALFLKHFRRLVAEGHVYVAMPPLY 532

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSE 570
            I  GK + Y  D++  +  L   +  +
Sbjct: 533 RIDVGKQVYYALDDDEKKGILDRIAAEK 560



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +   KG +++QR+KGLGEMN +QL ETT++PDTR L+++ I D  + D+L  
Sbjct: 550 KGILDRIAAEKIKGKVNVQRFKGLGEMNPAQLRETTIHPDTRRLVQLTIDDDRETDELLD 609

Query: 779 RLMGDE-VEPRREFIQE 794
           RL+  +    RR ++QE
Sbjct: 610 RLLAKKRAADRRAWLQE 626


>gi|254448183|ref|ZP_05061646.1| DNA topoisomerase IV, B subunit [gamma proteobacterium HTCC5015]
 gi|198262309|gb|EDY86591.1| DNA topoisomerase IV, B subunit [gamma proteobacterium HTCC5015]
          Length = 629

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/640 (35%), Positives = 331/640 (51%), Gaps = 15/640 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A  I++L GLD VKKRP MY   TD     +H+  EV+DN++DE++ G+A  I V 
Sbjct: 2   TDYKASDIEVLSGLDPVKKRPGMY---TDTTRP-NHLAQEVIDNSVDEAMAGHAKKIEVV 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DGS  VSD+GRG+P D+H E+G+   E+I+TRLHAGGKF+ K+Y  SGGLHGVG+SV
Sbjct: 58  LYKDGSLEVSDDGRGMPVDIHPEQGVPGVELILTRLHAGGKFSNKNYAFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD 186
           VNAL+S L + IKR+G ++ ++F  G   + L V  S G  +TGT V F      F    
Sbjct: 118 VNALTSRLDVHIKRDGKLHHIAFSAGEKTSDLTVVDSVGQRNTGTTVRFWADPQYFDSDK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++   L+H LR  + L   + +   D++S +  E     K G+  ++    +  + L   
Sbjct: 178 YSLPRLRHLLRAKAVLCPGLMVRFKDEKSGDKNEWCY--KDGLNDYLLEALQGWELLPPD 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 S +  ++D A+ W  +G       + N IP   GGTH++GLR+ LT  I  + E
Sbjct: 236 LFTGHLSSEKEAVDWALTWLPEGGEPVQESYVNLIPTPQGGTHVNGLRTGLTEAIREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  + V+S+KM DP+F+ QTKE+L S E  + V   V D  S
Sbjct: 296 FRNLLPRG-VKITPEDVWDKISYVISLKMQDPQFAGQTKERLSSRESAAFVSGVVKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + + +  + ++  R  + +      RK V    +LPGKLADC+  DP  +
Sbjct: 355 LYLNQNADTGEALAQMAITSAQRRLRSAKK---VVRKKVTSGPALPGKLADCTSSDPAMT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L+SQE+  +  ALG   
Sbjct: 412 ELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEPDQVLASQEVHDISIALGIEP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G       KLRY K+ I+ DAD DGAHI TLL   F R  P+L+  G +Y+  PPLY I 
Sbjct: 472 GSTDLG--KLRYGKVCILADADSDGAHIATLLCALFLRHFPALVEGGHVYLAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE      L      ++      ++           + +   I    +   
Sbjct: 530 VGKQVYYAVDEPERRGILDRIEAEKKKGKVTTTRFKGLGEMNPAQLRE-TSIHPDTRRLV 588

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
               +       +  +   +              +  + +
Sbjct: 589 RLTVEASDSAHSVFDMLLAKKRSGDRKQWLESKGDLADVV 628



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 10/81 (12%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +  +KG ++  R+KGLGEMN +QL ET+++PDTR L+R+ +  +  A  +F 
Sbjct: 544 RGILDRIEAEKKKGKVTTTRFKGLGEMNPAQLRETSIHPDTRRLVRLTVEASDSAHSVFD 603

Query: 779 RLM-----GDEVEPRREFIQE 794
            L+     GD    R+++++ 
Sbjct: 604 MLLAKKRSGD----RKQWLES 620


>gi|237807171|ref|YP_002891611.1| DNA topoisomerase IV subunit B [Tolumonas auensis DSM 9187]
 gi|237499432|gb|ACQ92025.1| DNA topoisomerase IV, B subunit [Tolumonas auensis DSM 9187]
          Length = 630

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/640 (35%), Positives = 332/640 (51%), Gaps = 14/640 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A+SI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TQAYTAESIEVLNGLEPVRRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHARRIDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEG+ A E+IM +LHAGGKF+  +Y+ SGGLHGVG+S
Sbjct: 58  ILHDDQSLEVTDDGRGMPVDIHPEEGVPAVELIMCKLHAGGKFSNSNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+GN+YEM+F  G     L +TG+    +TGT V F P +  F   
Sbjct: 118 VVNALSRRVEVTVRRDGNVYEMAFEQGDKVADLTITGTCGKRNTGTRVKFWPDAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   + I    +     +     Y+ G+  ++    +    L +
Sbjct: 178 KFSASRLVHILKAKAVLCPGLTIHF--EDRVNQQVYDWCYQDGLRDYLLDNLKDVIRLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   Q S DN ++D A+ W  +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 QPFTGQFSADNSAVDWALCWLPEGGELISESYVNLIPTVQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +    +LSIKM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EFRNLLPRG-VKLTPDDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSAAFVSGIVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +   A+ + +  ++++       RA     RK +    +LPGKL DC+  DP +
Sbjct: 355 SLWLNSNIELAEQLAELCINSAQ---RRLRAAKTVVRKKITQGPALPGKLTDCNCSDPMQ 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQAREREFQAIMPLRGKILNTWEVDASEVLASQEVHHISIAVGMD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              DS D++ LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  PPL+ I
Sbjct: 472 P--DSDDLSGLRYGKICILADADSDGLHIATLLCALFVKHFRPLVEKGHVYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE+  E  L      ++      ++           + +        +  
Sbjct: 530 DLGKEVYYALDEDEKEGVLQRLKAEKKRGTPQVTRFKGLGEMNPKQLRETTMDPNTRRLV 589

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
               D    E   +  +   +              N  + 
Sbjct: 590 QLTLDDETEETMQLMDMLLAKKRSGDRREWLESKGNLADI 629



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 20/112 (17%)

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI-SMQRYKGLGEMNASQLWETTLNPD 758
           +    +    + D+ +      +L  + +  ++G   + R+KGLGEMN  QL ETT++P+
Sbjct: 530 DLGKEVYYALDEDEKE-----GVLQRLKAEKKRGTPQVTRFKGLGEMNPKQLRETTMDPN 584

Query: 759 TRSLLRVKITDA-SQADDLFSRLM-----GDEVEPRREFIQENSLPSAL-DI 803
           TR L+++ + D   +   L   L+     GD    RRE+++       L DI
Sbjct: 585 TRRLVQLTLDDETEETMQLMDMLLAKKRSGD----RREWLES---KGNLADI 629


>gi|256832653|ref|YP_003161380.1| DNA gyrase subunit B domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686184|gb|ACV09077.1| DNA gyrase subunit B domain protein [Jonesia denitrificans DSM
           20603]
          Length = 723

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/675 (35%), Positives = 351/675 (52%), Gaps = 62/675 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S  I  S Y A  + +L+GL+AV+KRP MYIG TD   G+ H ++E++DN++DE+L G+ 
Sbjct: 15  SSQIPTSDYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGIMHCLWEIIDNSVDEALGGHC 73

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             ITVTL+ D S TV DNGRGIP D+  + G+S  EV+ T+LHAGGKF   SY  SGGLH
Sbjct: 74  TDITVTLHADTSVTVEDNGRGIPVDIEPKTGLSGVEVVYTKLHAGGKFGGGSYTASGGLH 133

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL----------------------DNPL 159
           GVG SVVNALS+ L + + R   ++ M+F  G                         + L
Sbjct: 134 GVGASVVNALSARLDVEVTRASKVHVMTFRRGEPGIFHDTDVDRPSPESRFDAFVNRSEL 193

Query: 160 VVTGSAGND-TGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
            V   A    TGT+V +     IF     FNYD L  R R+ SFL   + I++ D+R+  
Sbjct: 194 RVARKAKRGLTGTKVRYWADRQIFPTSAVFNYDELVARARQTSFLVPGLTITIRDERAVP 253

Query: 218 -------PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----------------- 253
                  P E +  + GG   FV +L            +  GS                 
Sbjct: 254 GTPGEHGPYEESFVHDGGAVDFVEFLAPDVPLTGTWRFQGTGSFKETVPVLDNNGHLVSQ 313

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS- 310
               +  +D+A+RW +GY   V  F N I    GGTHL G    L + +   VE +    
Sbjct: 314 EVERDCVVDIALRWGNGYDTTVRSFVNIIATPKGGTHLVGFEQGLVKYLRKAVETNARKL 373

Query: 311 ----KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K ++  +  +D   G T+VL++++ +P+F  QTKE L ++ VR++V   V D L A
Sbjct: 374 KVSTKDNQERIDKEDILAGLTAVLTVRLAEPQFEGQTKEVLGTAPVRAIVSKVVEDNLKA 433

Query: 367 WLEEHPLEAKI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
                  + K     +++K++     R +AR+ ++++RRK  L+ ++LP KLADC   D 
Sbjct: 434 LFTSTKRDDKAHTSLLLEKIVAEMRARVSARKQKEISRRKNALESSTLPAKLADCRTHDV 493

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELF+VEGDSA G+AK  RS E QA+LP+RGKILNV++A    ML + E  ++I  +G
Sbjct: 494 TRSELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASISDMLRNAECASIIQVIG 553

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G+  FD+   RY K+I+MTDADVDGAHIRTLLLT FFR M  LI  G ++   PPL+
Sbjct: 554 AGSGRS-FDLEAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPLIAEGRVFAAVPPLH 612

Query: 543 GITRGKSLQYVKDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I    S +          +  +  +L++  +     K  I +      +D     +  +
Sbjct: 613 RIEVVGSGRRKNSYIYTYSEAELTATLAKLRKQGRAFKEDIQRYKGLGEMDADQLAETTM 672

Query: 602 KDFYPNHDKTFIEQA 616
              +    +  ++ A
Sbjct: 673 DPAHRTLRRVTVDHA 687



 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 10/167 (5%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           ++ A+ +  I   S +S+         ++      V    +        F      I   
Sbjct: 543 AECASIIQVIGAGSGRSFDLEAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPLIAEG 602

Query: 696 RIEENYLTILSL------ICNGDKIKITGPCSL---LDTIFSIGRK-GISMQRYKGLGEM 745
           R+      +  +            I       L   L  +   GR     +QRYKGLGEM
Sbjct: 603 RVFAAVPPLHRIEVVGSGRRKNSYIYTYSEAELTATLAKLRKQGRAFKEDIQRYKGLGEM 662

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           +A QL ETT++P  R+L RV +  A  A++ F  LMG  V PR+EFI
Sbjct: 663 DADQLAETTMDPAHRTLRRVTVDHAHAAEEAFELLMGQHVAPRKEFI 709


>gi|91228380|ref|ZP_01262307.1| DNA topoisomerase IV subunit B [Vibrio alginolyticus 12G01]
 gi|91188079|gb|EAS74384.1| DNA topoisomerase IV subunit B [Vibrio alginolyticus 12G01]
          Length = 626

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/591 (36%), Positives = 325/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGEKVSDLTVTGTCGRRNRGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+L DK + +  +       K  +   V    
Sbjct: 172 KYFDSANFSVTRLVNNLRAKAVLCPGLEITLTDKVNDKDYKWYYEDGLKDYLAEGVKGYP 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +              N ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 VIPEEPFTGEFLADTEAANWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+K+ DP+F+ QTKE+L S +  + V 
Sbjct: 289 EAMREFCEFRNLLPRG-VKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRAAKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SAQDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS ++  LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLESLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  +  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDDEKDGILERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D++   ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSTATMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQNN 620


>gi|269967413|ref|ZP_06181473.1| DNA topoisomerase 4 subunit B [Vibrio alginolyticus 40B]
 gi|269828001|gb|EEZ82275.1| DNA topoisomerase 4 subunit B [Vibrio alginolyticus 40B]
          Length = 626

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/591 (36%), Positives = 325/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGEKVSDLTVTGTCGRRNRGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+L DK + +  +       K  +   V    
Sbjct: 172 KYFDSANFSVTRLVNNLRAKAVLCPGLEITLTDKVNGKDYKWYYEDGLKDYLAEGVKGYP 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +              N ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 VIPEEPFTGEFLADTEAANWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+K+ DP+F+ QTKE+L S +  + V 
Sbjct: 289 EAMREFCEFRNLLPRG-VKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRAAKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SAQDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS ++  LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLESLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  +  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDDEKDGILERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D++   ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSTATMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQNN 620


>gi|255320043|ref|ZP_05361239.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens SK82]
 gi|262380549|ref|ZP_06073703.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens
           SH164]
 gi|255302911|gb|EET82132.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens SK82]
 gi|262297995|gb|EEY85910.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens
           SH164]
          Length = 626

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/641 (34%), Positives = 345/641 (53%), Gaps = 20/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+A+ I V 
Sbjct: 2   SQYTAQSLEVLSGLDPVRRRPGMY---TDTTRP-NHLAQEVIDNAVDEALAGHANQIAVK 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F +G    PL V    +    +GT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYKMAFEHGEPVAPLEVLEGKAPKRASGTTVRFWPETRYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I+ ID+ + E  E     + G+  ++    + ++ + Q
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKINYIDEINNEKIEWQF--ENGLVDYLMDELQEREIVPQ 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  +  S + A+ WN    E +   + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVATGEAERASAEFAICWNTEGGEQIQESYVNLIPTAQGGTHVNGLRSGITDALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  S+V++   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASSIVQNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A  + +     S      + A+    RK ++   +LPGKLADC+    + 
Sbjct: 355 TLWLNQNSEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCAGLTRED 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLGSQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY K+ I+ DAD DG HI TLL   F +  P+L+  G L++  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKVCILADADSDGLHIATLLCALFVKHFPALVEEGHLFVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE+ LE  L                G ++ + LR        +D   +  
Sbjct: 530 DDGKDVHYALDEDELEAILKKTKTKTPQITRFKGLGEMNASQLRET-----TMDPNTRRL 584

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
                      A +      +           +  N  + +
Sbjct: 585 VQLDLDDIQLTAGLLDKLLAKKRSSDRKHWLEQKGNLADIV 625



 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRS 761
             L  I +G  +        L+ I    + K   + R+KGLGEMNASQL ETT++P+TR 
Sbjct: 524 PPLFRIDDGKDVHYALDEDELEAILKKTKTKTPQITRFKGLGEMNASQLRETTMDPNTRR 583

Query: 762 LLRVKITD 769
           L+++ + D
Sbjct: 584 LVQLDLDD 591


>gi|94957788|gb|ABF47144.1| DNA topoisomerase IV subunit B [Mesoplasma chauliocola]
          Length = 551

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/554 (40%), Positives = 330/554 (59%), Gaps = 11/554 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
              GLHH+++E++DN+IDE+L GY   I VTL  +GS TV+DNGRG+P  +H   G    
Sbjct: 3   DVRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADNGRGVPIGMHS-TGRPTP 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVI + LHAGGKF    YK SGGLHGVG SVVNALS    + I R+  + E+ F NG   
Sbjct: 62  EVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTIYRDKKVNEIEFTNGGKL 121

Query: 157 N-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
           N PL   G   N TGT V FLP   IF+   F++ T+  RL+E + LNS ++I++ DK +
Sbjct: 122 NIPLTEVG-TTNKTGTIVNFLPDDSIFNTTKFSFTTITERLKESALLNSGLRITITDKIN 180

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +  E     + G+  FV  L       +  P+ I G    I+ ++ +++ + ++E +L 
Sbjct: 181 DKFVEYQF--ENGLVEFVKELSSEFT-QITEPVVITGESKRIASEICIQYTEDFNETILG 237

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NN+   DGGTH++G ++ L R I  Y + +   K     +  +D REG  +++++K+P
Sbjct: 238 FANNVKTGDGGTHITGFKTGLVRAINDYAKNNKILKDKDPRLDSNDLREGLVAIVTVKIP 297

Query: 336 DP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +    +  QTK KL + + +  VE    D ++ WL E+ + A  I++K + A   R+ AR
Sbjct: 298 EDLIEYEGQTKGKLGTPDAKIAVEQVTYDFMNFWLIENKVPATKIIEKAMLARKAREEAR 357

Query: 394 RARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           +AR   R  KG     ++ GKL     R  + +EL+LVEGDSAGGSAK GR R  QAILP
Sbjct: 358 KARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELYLVEGDSAGGSAKSGRDRTFQAILP 417

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGK++N E+A+  +++ ++EI T+ITA+G GIG   FD+N + Y K+IIMTDAD DGAH
Sbjct: 418 LRGKVINSEKAKLAELMKNEEIQTIITAIGAGIG-QDFDVNDINYGKVIIMTDADTDGAH 476

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-GKSLQYVKDEESLEDYLINQSLSEE 571
           I+TLLLTFF+R M  LI N  ++I  PPLY +T   +   Y+ DEE L D+    +   E
Sbjct: 477 IQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADRKFIYLWDEEELADFAKTATKKYE 536

Query: 572 IELFCDSKGVISKN 585
           I+ +     + +  
Sbjct: 537 IQRYKGLGEMNADQ 550



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 3/165 (1%)

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645
             I++   ++           +    QA++     V N E  +   +    ++   +  I
Sbjct: 387 KEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLAELMKNEEIQTIITAI 446

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
                + +  +  N   ++           +      F +      I +  +      + 
Sbjct: 447 GAGIGQDFDVNDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLY 506

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
            L     K         L        K   +QRYKGLGEMNA QL
Sbjct: 507 KLTFADRKFIYLWDEEELADFAKTATKKYEIQRYKGLGEMNADQL 551


>gi|13507861|ref|NP_109810.1| topoisomerase IV subunit B [Mycoplasma pneumoniae M129]
 gi|2501299|sp|P78016|PARE_MYCPN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|1673680|gb|AAB95680.1| topoisomerase IV subunit B [Mycoplasma pneumoniae M129]
          Length = 635

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/648 (37%), Positives = 363/648 (56%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y   +I+ILKGLDAVKKRP MYIG TD   G HH+++E+LDN +DE L G+A+ I V
Sbjct: 2   KNNYSEANIKILKGLDAVKKRPGMYIGSTDS-RGFHHLLWEILDNCVDEVLSGFANTIAV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ +   TVSDNGRGIP + H +  IS  + + T LHAGGKF+  SYK++GGLHGVG S
Sbjct: 61  VLHAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSV 184
           VVNALS  L++ +KR+G +Y   + N G +       G+A  ++ GT VTF P   +F  
Sbjct: 121 VVNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKK 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+ + ++ RL+EL+FL   +Q++ +D+ +    +   F + GI  ++  L+   K  +
Sbjct: 181 IHFDSELIRARLKELAFLFKKLQLTFVDE-TGSGEKEVFFTEAGISQYLDELNADSK-QI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I + G+ D+I ++   ++ DG  E +L F N+I   +GG+H +  R ++   I +Y 
Sbjct: 239 AQKIFVSGTEDDIELEAVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSVGDVINNYC 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
            K    K+  ++    + REG   ++ + +P+    F  QTK KL S EV++VV+     
Sbjct: 299 RKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAVVQKLTQK 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
               +LE + ++AK+IV+K+     +R   ++ R + +          L GKLA    + 
Sbjct: 359 HFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKLAPAQSKK 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK-MLSSQEIGTLITA 480
             + ELF+VEGDSAGG+AK GR R  QAILPLRGK+LNVE+    K  ++++E+ TLI  
Sbjct: 419 VAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEELLTLIFC 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG + F I   +Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y+  PP
Sbjct: 479 IGTGIGNN-FTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHIYLALPP 537

Query: 541 LYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY    R K  +Y+  E+ LE Y      S          G ++ + L         ++ 
Sbjct: 538 LYKFEGRDKKARYLWTEQELEQYRAKH--SHFNVQRYKGLGEMNADQLWET-----TMNP 590

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
           + +         FI+      VF  +  +       S +   +NF +E
Sbjct: 591 MTRKLIQVKLDNFIQAEKQINVFMGDKTELRK----SWIEANINFSSE 634



 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 4/177 (2%)

Query: 621 VFNCESDQEINVSLA-SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           V N E       ++   +L   +  I      ++       D ++           +   
Sbjct: 454 VLNVEKINNKKEAINNEELLTLIFCIGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQIL 513

Query: 680 SSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQR 738
              F +      I    I      +        K +       L+      +    ++QR
Sbjct: 514 LLTFFYRYMKPLIEKGHIYLALPPLYKFEGRDKKARYLWTEQELEQYR--AKHSHFNVQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           YKGLGEMNA QLWETT+NP TR L++VK+ +  QA+   +  MGD+ E R+ +I+ N
Sbjct: 572 YKGLGEMNADQLWETTMNPMTRKLIQVKLDNFIQAEKQINVFMGDKTELRKSWIEAN 628


>gi|71902107|ref|ZP_00684141.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Ann-1]
 gi|71728125|gb|EAO30322.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Ann-1]
          Length = 629

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 230/588 (39%), Positives = 324/588 (55%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           NS Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L GYA+ I V
Sbjct: 2   NSRYNAADIEVLTGLDPVKRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGYANRIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC V+DNGRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVADNGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS + L IKREG+ + M F  G   + L V G+ +  +TGT + F P S  F   
Sbjct: 118 VVNALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L+++ + E        K G+  ++       + L  
Sbjct: 178 KFNVRVLRHLLRAKAVLCPGLTVELLEEATGEINTWHF--KDGLRDYLKGEMTESELLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A+ W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 ELFIGCLKKDTEVVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +ES V+D  S
Sbjct: 296 FRNLLPRG-IKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTVHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++    + I +  ++ +  R           RK +    +LPGKLADC   D  ++
Sbjct: 355 LWLNQNVDIGEHIAQIAIERASARLKTE---KQVTRKKITHGPALPGKLADCISLDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASDEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  +++ LRY KI+I+ DAD DG HI TLL   F +  P L+  G +++  PPL+ + 
Sbjct: 472 GKD--NLSGLRYGKIVILADADSDGLHIATLLTALFLKHFPGLVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  D+E      E     +   +         G ++   LR 
Sbjct: 530 VGKQVFYAVDDEEKTILLEKIQREKIKGQISVTRFKGLGEMNPQQLRE 577



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTR 760
              +    + ++  I     LL+ I     KG IS+ R+KGLGEMN  QL E+T++PDTR
Sbjct: 531 GKQVFYAVDDEEKTI-----LLEKIQREKIKGQISVTRFKGLGEMNPQQLRESTIHPDTR 585

Query: 761 SLLRVKITDASQADDLFSRLMGDEVE-PRREFIQENSLPSALDI 803
            L+++ + D +Q   L   L+  +    R+++++     ++LDI
Sbjct: 586 RLVQLTMDDNTQTCSLMDMLLAKKRANDRKQWLETKGNLASLDI 629


>gi|71274921|ref|ZP_00651209.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Dixon]
 gi|170729813|ref|YP_001775246.1| DNA topoisomerase IV subunit B [Xylella fastidiosa M12]
 gi|71164653|gb|EAO14367.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Dixon]
 gi|167964606|gb|ACA11616.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa M12]
          Length = 629

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 230/588 (39%), Positives = 324/588 (55%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           NS Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L GYA+ I V
Sbjct: 2   NSRYNAADIEVLTGLDPVKRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGYANRIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC V+DNGRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVADNGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS + L IKREG+ + M F  G   + L V G+ +  +TGT + F P S  F   
Sbjct: 118 VVNALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L+++ + E        K G+  ++       + L  
Sbjct: 178 KFNVRVLRHLLRAKAVLCPGLTVELLEEATGEINTWHF--KDGLRDYLKGEMTESELLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A+ W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 ELFIGCLKKDTEVVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +ES V+D  S
Sbjct: 296 FRNLLPRG-IKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTVHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++    + I +  ++ +  R           RK +    +LPGKLADC   D  ++
Sbjct: 355 LWLNQNVDIGEHIAQIAIERASARLKTE---KQVTRKKITHGPALPGKLADCISLDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASDEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  +++ LRY KI+I+ DAD DG HI TLL   F +  P L+  G +++  PPL+ + 
Sbjct: 472 GKD--NLSGLRYGKIVILADADSDGLHIATLLTALFLKHFPGLVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  D+E      E     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDDEEKTILLEKIQREKIKGQVSVTRFKGLGEMNPQQLRE 577



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTR 760
              +    + ++  I     LL+ I     KG +S+ R+KGLGEMN  QL E+T++PDTR
Sbjct: 531 GKQVFYALDDEEKTI-----LLEKIQREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTR 585

Query: 761 SLLRVKITDASQADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
            L+++ + D +Q   L   L+  +    R+++++     ++LDI
Sbjct: 586 RLVQLTMDDNTQTCSLMDMLLAKKRASDRKQWLETKGNLASLDI 629


>gi|284008571|emb|CBA75135.1| DNA topoisomerase IV subunit B [Arsenophonus nasoniae]
          Length = 631

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 230/650 (35%), Positives = 331/650 (50%), Gaps = 22/650 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S+Y+A++I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MTQSNYNAEAIEVLSGLEPVRRRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGYAKRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  D S  V D+GRG+P D+H E+ + A E+I+ +LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILYEDQSLEVIDDGRGMPVDIHPEKKVPAVELILGQLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ + R+  IY ++F NG     L V GS     TGT V F P S  F 
Sbjct: 117 ISVVNALSKRIEVTVSRDSQIYRIAFENGEKVQELEVIGSCAKRTTGTGVRFWPDSHFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +        G+  ++         L
Sbjct: 177 NPRFSISRLVHVLKAKAVLCPGVEIIFKDKINNTEQTWRY--NDGLTDYLMEAVNGLVTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +       +     +D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKAFVGNFAGQLEMVDWALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    + GDD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEYRNLLPRG-VKLTGDDIWERCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++  EA+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQEAEQLAELTISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NFTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI ++ DAD DG HI TLL   F R  P+L+  G +YI  PPLY
Sbjct: 469 IGIDPDSNDLSQLRYGKICVLADADSDGLHIATLLCALFVRHFPTLVKAGHIYIAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DE      L   S           K  + +      ++     +  + 
Sbjct: 529 RIDLGKEVYYALDEGEKAAVLDRLSYKR-------GKPNVQRFKGLGEMNPTQLRETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                  +  I             D  +    A    N L    +  E  
Sbjct: 582 PNTRRLVQLIINDDNYQETL-AMMDMLLAKKRAEDRRNWLQNKGDAIEIE 630



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLMGDE-VE 786
           ++G  ++QR+KGLGEMN +QL ETTL+P+TR L+++ I D    +   +   L+  +  E
Sbjct: 555 KRGKPNVQRFKGLGEMNPTQLRETTLDPNTRRLVQLIINDDNYQETLAMMDMLLAKKRAE 614

Query: 787 PRREFIQE 794
            RR ++Q 
Sbjct: 615 DRRNWLQN 622


>gi|317125075|ref|YP_004099187.1| DNA topoisomerase IV subunit B [Intrasporangium calvum DSM 43043]
 gi|315589163|gb|ADU48460.1| DNA topoisomerase IV subunit B [Intrasporangium calvum DSM 43043]
          Length = 710

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 237/681 (34%), Positives = 343/681 (50%), Gaps = 58/681 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N  Y A  +Q+L+GL+AV+KRP MYIG TD + GL H ++E++DNA+DE+L G  D I V
Sbjct: 12  NGDYTARHLQVLEGLEAVRKRPGMYIGSTD-QRGLMHCLWEIIDNAVDEALAGVCDHIDV 70

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DGS  V DNGRGIP D+    G+S  E++ T+LHAGGKF   SY  +GGLHGVG S
Sbjct: 71  ILARDGSIEVRDNGRGIPVDMEPRTGLSGVELVFTKLHAGGKFGGTSYAATGGLHGVGAS 130

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI------------LDNPLV---------VTGSA 165
           VVNALS+ L + + R+G  Y MSF  G              D+P           V G  
Sbjct: 131 VVNALSARLDVEVDRDGRTYGMSFRRGEPGIFTDSGSGHSPDSPFEPYEKRSAVPVIGKT 190

Query: 166 GN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------SP 216
               TG+ V F P   IF      +YD L  R R+ SFL   +++ + D+R       + 
Sbjct: 191 KRGVTGSRVRFWPDPHIFLKGSVLDYDALVGRARQTSFLVPGLRLVIRDERRLPGTPAAD 250

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKP-------------------LMQSPIRIQGSRDNI 257
            P E    + GGI  FV +L                           +  +         
Sbjct: 251 GPVEEVFHHDGGITEFVEFLAPDPPVTDVWRLQGSGTFKETVPILDNEGHMSPTELEREC 310

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-GSKKDKRS 316
            +D+A+RW  GY   +  F N I    GGTH++G   AL +     +E +    K     
Sbjct: 311 VVDVALRWGQGYDARMQSFVNIITTPKGGTHVAGFEQALLKVFRRQLEINGRRLKVGNDK 370

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
              DD   G T+V+++++ +P+F  QTKE L ++ VR++V   V   L+A L       K
Sbjct: 371 PDKDDVLAGMTAVVTVRLAEPQFEGQTKEVLGTNAVRAIVARVVETELTARLTSTKRGDK 430

Query: 377 I----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +++KV+     R +AR  ++  RRK  L+ ++LP KL DC   D  +SELF+VEG
Sbjct: 431 AQAALLLEKVVSEMKSRISARLHKETQRRKNALESSTLPTKLRDCRTNDVDRSELFIVEG 490

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSA G+AK+ R+ E QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD+
Sbjct: 491 DSAMGTAKEARNSEFQALLPIRGKILNVQKASVSDMLKNAECASIIQVIGAGSGRS-FDL 549

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
              RY K+IIMTDADVDGAHIRTLLLT FFR M  L+  G +Y   PPL+ I    +   
Sbjct: 550 AAARYGKVIIMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAMPPLHRIEVVNAGAK 609

Query: 553 VKDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
             +      +  + ++++   +     K  + +      ++     D  +   +    + 
Sbjct: 610 KNELIYTYNEIEMRRTVARLEKTGKKIKQPMQRYKGLGEMNADQLADTTMDPRHRTLRRV 669

Query: 612 FI-EQAVISGVFNCESDQEIN 631
            + +     G F      E+ 
Sbjct: 670 TMRDFEAAEGTFELLMGNEVA 690



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 726 IFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
           +   G+K    MQRYKGLGEMNA QL +TT++P  R+L RV + D   A+  F  LMG+E
Sbjct: 629 LEKTGKKIKQPMQRYKGLGEMNADQLADTTMDPRHRTLRRVTMRDFEAAEGTFELLMGNE 688

Query: 785 VEPRREFIQENSLPSA 800
           V PR++FI E++    
Sbjct: 689 VAPRKDFIIESAAEVD 704


>gi|325498583|gb|EGC96442.1| DNA topoisomerase IV subunit B [Escherichia fergusonii ECD227]
          Length = 630

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 219/647 (33%), Positives = 333/647 (51%), Gaps = 20/647 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFSGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y   EE  E  L       E       K  + +      ++     +  +    
Sbjct: 531 LGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +  I+        +   D  +    +    N L    + +E  
Sbjct: 584 RRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 99/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKH 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|304396845|ref|ZP_07378725.1| DNA topoisomerase IV, B subunit [Pantoea sp. aB]
 gi|304355641|gb|EFM20008.1| DNA topoisomerase IV, B subunit [Pantoea sp. aB]
          Length = 631

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/586 (39%), Positives = 332/586 (56%), Gaps = 14/586 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S+Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MSQSNYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALGGHAKRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R G IY+M+F NG     L VTG+ A  +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRNGEIYDMAFENGDKVQDLTVTGTVAKRNTGTRVHFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +      + G+  ++         L
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDKLNNTEQTWCY--EDGLTDYLCEAVNGLPTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFVGSFAGDVEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNIQTAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F +   SL+ NG +Y+  PPLY
Sbjct: 469 IGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRSLVSNGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I  GK + Y  DE+  E  L      +        KG+   N L+
Sbjct: 529 RIDLGKEVYYALDEDEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQ 574



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDAS 771
            LD     G       +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I   D  
Sbjct: 539 ALDEDEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTISEEDVD 598

Query: 772 QADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           Q   +   L+  +  E RR ++QE    + +D+
Sbjct: 599 QTIRMMDMLLAKKRSEDRRNWLQEKGDTADIDV 631


>gi|28198449|ref|NP_778763.1| DNA topoisomerase IV subunit B [Xylella fastidiosa Temecula1]
 gi|182681122|ref|YP_001829282.1| DNA topoisomerase IV subunit B [Xylella fastidiosa M23]
 gi|28056533|gb|AAO28412.1| topoisomerase IV subunit B [Xylella fastidiosa Temecula1]
 gi|182631232|gb|ACB92008.1| DNA topoisomerase IV, B subunit [Xylella fastidiosa M23]
          Length = 629

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 230/588 (39%), Positives = 324/588 (55%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           NS Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L GYA+ I V
Sbjct: 2   NSRYNAADIEVLTGLDPVKRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGYANRIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC V+DNGRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVADNGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS + L IKREG+ + M F  G   + L V G+ +  +TGT + F P S  F   
Sbjct: 118 VVNALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L+++ + E        K G+  ++       + L  
Sbjct: 178 KFNVRVLRHLLRAKAVLCPGLTVELLEEATGEINTWHF--KDGLRDYLKGEMTESELLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A+ W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 ELFIGCLKKDTEVVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +ES V+D  S
Sbjct: 296 FRNLLPRG-IKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTVHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++    + I +  ++ +  R           RK +    +LPGKLADC   D  ++
Sbjct: 355 LWLNQNVDIGEHIAQIAIERASARLKTE---KQVTRKKITHGPALPGKLADCISLDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASDEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  +++ LRY KI+I+ DAD DG HI TLL   F +  P L+  G +++  PPL+ + 
Sbjct: 472 GKD--NLSGLRYGKIVILADADSDGLHIATLLTALFLKHFPGLVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  D+E      E     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDDEEKTILLEKIQREKIKGQISVTRFKGLGEMNPQQLRE 577



 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTR 760
              +    + ++  I     LL+ I     KG IS+ R+KGLGEMN  QL E+T++PDTR
Sbjct: 531 GKQVFYALDDEEKTI-----LLEKIQREKIKGQISVTRFKGLGEMNPQQLRESTIHPDTR 585

Query: 761 SLLRVKITDASQADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
            L+++ + D +Q   L   L+  +    R+++++     ++LDI
Sbjct: 586 RLVQLTMDDNTQTCSLMDMLLAKKRASDRKQWLETKGNLASLDI 629


>gi|269960215|ref|ZP_06174590.1| DNA topoisomerase 4 subunit B [Vibrio harveyi 1DA3]
 gi|269835022|gb|EEZ89106.1| DNA topoisomerase 4 subunit B [Vibrio harveyi 1DA3]
          Length = 626

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 216/591 (36%), Positives = 325/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L V G+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVVGTCGRRNRGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+  DK + +  +       K  +   V    
Sbjct: 172 KYFDSANFSVTRLVNNLRAKAVLCPGLEITFTDKVNNKDYKWFYEDGLKDYLAEGVKGYT 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         +    N ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 VLPEEPFTGEFSAETEAANWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+K+ DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDSFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS +++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLDSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  +  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDDEKDGVLERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D++   ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSAATMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQSN 620


>gi|119475370|ref|ZP_01615723.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
           HTCC2143]
 gi|119451573|gb|EAW32806.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
           HTCC2143]
          Length = 627

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/642 (35%), Positives = 331/642 (51%), Gaps = 23/642 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y+A SI++L GLD V+KRP MY   T+     +H+  EV+DN++DE+L G+A  I V 
Sbjct: 2   SDYNAGSIEVLTGLDPVRKRPGMY---TETTRP-NHLAQEVIDNSVDEALAGFAHQIDVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ DGS T SD+GRG+P D+H E+     EVI+T LHAGGKFN  +Y+ SGGLHGVGVSV
Sbjct: 58  MHKDGSLTCSDDGRGMPVDMHPEQKKPGVEVILTTLHAGGKFNSDNYQFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L++ I+R+G +Y+M F NG     L V  S    +TGT + F P    F    
Sbjct: 118 VNALSKLLEITIRRDGEVYKMEFKNGDKSKDLEVIDSCGKRNTGTSIRFTPDGSYFDSAK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   ++H LR  + L   ++++ +D+ S E       Y+ G+  ++       + L + 
Sbjct: 178 FSVARMKHVLRAKAVLCPGLRVTCLDEASGEK--EEWHYEDGLRDYMVASTHGWETLPKE 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     S  N  +D A++W  +G       + N IP   GGTH++GLR+ L   I  + E
Sbjct: 236 PFIGSFSGSNEGVDWAVQWLPEGGELTTESYVNLIPTAQGGTHVNGLRTGLLEAIREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  DD  +    VLS K+ DP+FS QTKE+L S E  + V     D  S
Sbjct: 296 FRSLLPRG-IKLSPDDIWDKCCYVLSSKLEDPQFSGQTKERLSSREAAAFVSGVAKDSFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  +A+ +    ++ +  R           RK V    +LPGKLADCS  D ++ 
Sbjct: 355 LWLNQHTEDAEKLADMCINNAQSRMKKS---KKVARKKVTSGPALPGKLADCSGNDVERG 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQGR R+ QAILPLRGKILN       ++L+S+E+  +  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQGRDRQYQAILPLRGKILNTWEIDSQEILASEEVHNIAVAIGVDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
              S D++ LRYHK+ I+ DAD DG HI TL+   F R    L+  G +++  PPLY I 
Sbjct: 472 --ASDDLSGLRYHKVCILADADSDGLHIATLICALFVRHFRPLVQAGHVFVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            GK + Y  D+       +         +         G ++   LR  +     +    
Sbjct: 530 VGKDVYYALDDSEKQGILDRIEAENKKGKVNVQRFKGLGEMNPLQLRETV-----MSGDT 584

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           +       ++  E   +  +   +           +  N   
Sbjct: 585 RRLVRLSIESGDETNQLMDMLLAKKRSGDRKIWLEEKGNLAE 626



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG +++QR+KGLGEMN  QL ET ++ DTR L+R+ I    + + L   L
Sbjct: 546 ILDRIEAENKKGKVNVQRFKGLGEMNPLQLRETVMSGDTRRLVRLSIESGDETNQLMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++E
Sbjct: 606 LAKKRSGD----RKIWLEE 620


>gi|300718429|ref|YP_003743232.1| DNA topoisomerase IV subunit B [Erwinia billingiae Eb661]
 gi|299064265|emb|CAX61385.1| DNA topoisomerase IV subunit B [Erwinia billingiae Eb661]
          Length = 629

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/586 (39%), Positives = 329/586 (56%), Gaps = 14/586 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+ADSI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNADSIEVLSGLEPVRRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHAKRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I  RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ ++R   +YEM+F NG     L VTG+    +TGT V F P  + F 
Sbjct: 117 ISVVNALSTRVEVTVRRNAEVYEMAFENGDKVEDLHVTGTVGKRNTGTRVRFWPDVNFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D  +   +        G+  ++         L
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDNVNNTEQTWCY--ADGLTDYLCEAVNGLPTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PERPFVGAFAGDVEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+I+ +  + ++       RA     RK +    +LPGKLADCS +D 
Sbjct: 354 AFSLWLNQNIQTAEILAEMAVSSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCSAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY
Sbjct: 469 IGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I  GK + Y  DEE     L      +        KG+   N L+
Sbjct: 529 RIDLGKEVYYALDEEEKAGILDQLKRKKGKPGVQRFKGLGEMNPLQ 574



 Score = 94.3 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 100/292 (34%), Gaps = 46/292 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNIQTAEILAEMAVSSAQRRMRAAKKVVRKKLTSGPALPGKLADCSAQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKN 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + GI            +QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGILDQLKRKKGKPGVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKITD--ASQADDLFSRLMGDE-VEPRREFIQENSLPSAL 801
           TTL+P+TR L+++ + D    +   +   L+  +  E RR ++QEN   + +
Sbjct: 578 TTLDPNTRRLVQLTVEDDEVEKTMAVMDMLLAKKRSEDRRNWLQENGHTADI 629


>gi|212711189|ref|ZP_03319317.1| hypothetical protein PROVALCAL_02261 [Providencia alcalifaciens DSM
           30120]
 gi|212686357|gb|EEB45885.1| hypothetical protein PROVALCAL_02261 [Providencia alcalifaciens DSM
           30120]
          Length = 631

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 215/563 (38%), Positives = 303/563 (53%), Gaps = 12/563 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+A+ I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNAEDIEVLSGLEPVRRRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHAGHI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  D S  V D+GRG+P D+H E  +SA E+I+ +LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  QVILYPDQSLEVIDDGRGMPVDIHPEMKVSAVELILGQLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G +Y+++F NG     L V G+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRIEVTVRRDGQVYQIAFENGDKVEDLQVIGTCGKRNTGTSVHFWPDESYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   VQI+  D  +   +              S       P 
Sbjct: 177 SPRFSVSRLTHNLKAKAVLCPGVQITFKDLLNDTEQSWCYSDGLTDYLMESVDGFEALPA 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                      +       +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 KPFTGEFSAEVEAAQW-ALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEFRNILPRG-VKLSADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADCS +D  
Sbjct: 355 FSLWLNQNVQVAEQLAEMAISSAQ---RRLRASKKVVRKKLTSGPALPGKLADCSSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L+SQE+  +  A+G 
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDISVAIGM 471

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
               +  DI++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +Y+  PPLY 
Sbjct: 472 DPDSE--DISQLRYGKVCILADADSDGLHIATLLCALFVRHFPKLVKEGHVYMAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQ 566
           I  GK   Y  DE      L   
Sbjct: 530 IDLGKETYYALDESEKNAVLDRL 552



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL--FSRLMGDE-VE 786
           +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D +  + +     L+  +  E
Sbjct: 555 KKGKPNVQRFKGLGEMNPPQLRETTLDPNTRRLVQLTIDDDNYTETMSKMDMLLAKKRSE 614

Query: 787 PRREFIQE 794
            RR ++QE
Sbjct: 615 DRRNWLQE 622


>gi|19909663|dbj|BAB87027.1| DNA gyrase subunit B [Erythrobacter sp. N73102]
          Length = 482

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 277/484 (57%), Positives = 357/484 (73%), Gaps = 17/484 (3%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM++EV DNAIDE+L G+ D++ + LN DGS +V DNGRGIP D+HKEEG+
Sbjct: 1   DTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVDMHKEEGV 60

Query: 94  SAAEVIMTRLHAGGKF----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           SAAEVIMT+LHAGGKF    +  +YKVSGGLHGVGVSVVNALS WL+L I R G  + M 
Sbjct: 61  SAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELTIWRNGKEHWMR 120

Query: 150 FINGILDNPLVVTGSAG----------NDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRE 198
           F +G   N L V G A              GT VTF  S+D F    +F+++ L+HR RE
Sbjct: 121 FEHGDAVNSLEVKGDAPKVDQNPDDDGFKKGTRVTFKASTDTFKNVTEFDFEKLEHRYRE 180

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           L+FLNS V+I + DKR  E  E  +FY+GGI AFV +LDR+K+ L+  PI +   +D I 
Sbjct: 181 LAFLNSGVRILIRDKRHEEVVEHDLFYEGGIAAFVRWLDRNKEALISDPISVSAEKDGIG 240

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           ID+A+ WND Y+ENVLCFTNNIPQ+DGGTHL+  R+ALTR +  Y ++    KK+K S+ 
Sbjct: 241 IDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAFRAALTRTLNGYADREGLLKKEKVSLS 300

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           G+D REG T+++S+K+PDP+FSSQTK+KLVSSEVR  +ES + + ++ WLEE+P +AK I
Sbjct: 301 GEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQPLESLMGEKMTEWLEENPADAKAI 360

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++K++DA      A +      RKG + +ASLPGKL+DC ERD  K+E+FLVEGDSAGGS
Sbjct: 361 IQKIIDA-AAAREAAKRAREMSRKGAMSVASLPGKLSDCRERDATKAEIFLVEGDSAGGS 419

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR  + QAILPL+GKILNVERARFD+++SS+E+GTLI A+GTGI +D FD+ KLRYH
Sbjct: 420 AKGGRDSQYQAILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGI-RDEFDLEKLRYH 478

Query: 499 KIII 502
           KI+I
Sbjct: 479 KIVI 482


>gi|254230596|ref|ZP_04923958.1| DNA topoisomerase IV, B subunit [Vibrio sp. Ex25]
 gi|151936883|gb|EDN55779.1| DNA topoisomerase IV, B subunit [Vibrio sp. Ex25]
          Length = 626

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/591 (36%), Positives = 325/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+L DK + +  +       K  +   V    
Sbjct: 172 KYFDSANFSVTRLVNNLRAKAVLCPGLEITLTDKVNGKDYKWYYEDGLKDYLAEGVKGYP 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +              N ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 VIPEEPFTGEFLADTEAANWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+K+ DP+F+ QTKE+L S +  + V 
Sbjct: 289 EAMREFCEFRNLLPRG-VKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRAAKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SAQDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS ++  LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLEGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  +  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDDEKDGILERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D++   ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSTATMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQNN 620


>gi|300724859|ref|YP_003714184.1| DNA topoisomerase IV subunit B [Xenorhabdus nematophila ATCC 19061]
 gi|297631401|emb|CBJ92098.1| DNA topoisomerase IV, subunit B [Xenorhabdus nematophila ATCC
           19061]
          Length = 631

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/643 (35%), Positives = 337/643 (52%), Gaps = 17/643 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+A++I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNAEAIEVLSGLEPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKHI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EE +SA E+I+TRLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHSDQSLEVIDDGRGMPVDIHPEEKVSAVELILTRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R   +++++F NG     L V GS    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVRRYSQVHQIAFENGEKVQELDVIGSCGKRNTGTSVHFWPDESYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           +  F+   L H L+  + L   V+I   DK +   ++             +       P 
Sbjct: 177 IPRFSVTRLTHLLKAKAVLCPGVEIVFKDKLNGTEQKWCYADGLTDYLLEAVNGLVTLPQ 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  +       +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 SPFVGTFSGETEAADW-AVLWLPEGGELLAESYVNLIPTVQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEFRNLLPRG-VKLSADDIWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL +H  +A+ + +  + ++       RA     RK + +  +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQHTQDAEQLAEMAIASAQ---RRMRAAKKVVRKKLTNGPALPGKLADCTAQDLN 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L+SQE+  +  ++  
Sbjct: 412 ITELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R  P+L+  G +Y+  PPLY 
Sbjct: 470 GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKRGHVYMAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DE      L   S           KG+   N ++        +D   + 
Sbjct: 530 IDLGKEVHYALDEGEKSAILDRLSRKRGKPNVQRFKGLGEMNPIQ---LRETTLDPNTRR 586

Query: 604 F--YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                  D+ + E   +  +   +   E   +   +  + +N 
Sbjct: 587 LVQLTIDDENYQETLSVMDMLLAKKRSEDRRNWLQEKGDSINI 629



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDE-VE 786
           ++G  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D    +   +   L+  +  E
Sbjct: 555 KRGKPNVQRFKGLGEMNPIQLRETTLDPNTRRLVQLTIDDENYQETLSVMDMLLAKKRSE 614

Query: 787 PRREFIQE 794
            RR ++QE
Sbjct: 615 DRRNWLQE 622


>gi|163803900|ref|ZP_02197740.1| DNA topoisomerase IV subunit B [Vibrio sp. AND4]
 gi|159172299|gb|EDP57187.1| DNA topoisomerase IV subunit B [Vibrio sp. AND4]
          Length = 626

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 219/591 (37%), Positives = 325/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDT 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+  DK + +  +       K  +   V    
Sbjct: 172 KYFDSANFSVTRLVNNLRAKAVLCPGLEITFTDKVNNKDHKWYYEDGLKDYLAEGVKGYP 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         +    N ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 VLPEVPFTGEFSAETEAANWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLSIK+ DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGDDIFDRCSYVLSIKIQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDSFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS +++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLDSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D+   E  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDGEKEGILERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D++   ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSAATMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQSN 620


>gi|301633245|gb|ADK86799.1| DNA topoisomerase IV, B subunit [Mycoplasma pneumoniae FH]
          Length = 635

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 238/648 (36%), Positives = 361/648 (55%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y   +I+ILKGLDAVKKRP MYIG TD   G HH+++E+LDN +DE L G+A+ I V
Sbjct: 2   KNNYSEANIKILKGLDAVKKRPGMYIGSTDS-RGFHHLLWEILDNCVDEVLSGFANTIAV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ +   TVSDNGRGIP + H +  IS  + + T LHAGGKF+  SYK++GGLHGVG S
Sbjct: 61  VLHAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSV 184
           VVNALS  L++ +KR+G +Y   + N G +       G+A  ++ GT VTF P   +F  
Sbjct: 121 VVNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKK 180

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+ + ++ RL+EL+FL   +Q++ +D+ +    +   F + GI  ++  L+   K  +
Sbjct: 181 IHFDSELIRARLKELAFLFKKLQLTFVDE-TGSGEKEVFFTEAGISQYLDELNADSK-QI 238

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I + G+ D+I ++   ++ DG  E +L F N+I   +GG+H +G R ++   I +Y 
Sbjct: 239 AQKIFVSGTEDDIELEAVFQFIDGEDEKLLSFANSIRTSEGGSHEAGFRQSVGDVINNYC 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
            K    K+  ++    + REG   ++ + +P+    F  QTK KL S EV++VV+     
Sbjct: 299 RKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAVVQKLTQK 358

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421
               +LE + ++AK+IV+K+     +R   ++ R + +          L GKLA    + 
Sbjct: 359 HFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKLAPAQSKK 418

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK-MLSSQEIGTLITA 480
             + ELF+VEGDSAGG+AK GR R  QAILPLRGK+LNVE+    K  ++++E+ TLI  
Sbjct: 419 VAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEELLTLIFC 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +GTGIG + F I   +Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +Y+  PP
Sbjct: 479 IGTGIGNN-FTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHIYLALPP 537

Query: 541 LYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           LY    R K  +Y+  E+ LE Y      S          G ++ + L          + 
Sbjct: 538 LYKFEGRDKKARYLWTEQELEQYRAKH--SHFNVQRYKGLGEMNADQLW---------ET 586

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            +        +  ++  + +         +      S +   +NF +E
Sbjct: 587 TMNPMTRKLIQIKLDNFIQAEKQINVFMGDKTELRKSWIEANINFSSE 634



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 4/177 (2%)

Query: 621 VFNCESDQEINVSLA-SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           V N E       ++   +L   +  I      ++       D ++           +   
Sbjct: 454 VLNVEKINNKKEAINNEELLTLIFCIGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQIL 513

Query: 680 SSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQR 738
              F +      I    I      +        K +       L+      +    ++QR
Sbjct: 514 LLTFFYRYMKPLIEKGHIYLALPPLYKFEGRDKKARYLWTEQELEQYR--AKHSHFNVQR 571

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           YKGLGEMNA QLWETT+NP TR L+++K+ +  QA+   +  MGD+ E R+ +I+ N
Sbjct: 572 YKGLGEMNADQLWETTMNPMTRKLIQIKLDNFIQAEKQINVFMGDKTELRKSWIEAN 628


>gi|49474260|ref|YP_032302.1| DNA topoisomerase IV subunit B [Bartonella quintana str. Toulouse]
 gi|49239764|emb|CAF26151.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse]
          Length = 685

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 239/592 (40%), Positives = 342/592 (57%), Gaps = 18/592 (3%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+   + Q  +Y+A SI++LKGL+ V+ RP MYIG TD    LHH+  E++DNA+DE++ 
Sbjct: 35  MTSKKDTQEDNYNALSIRVLKGLEPVRLRPGMYIGGTDS-KALHHLFAEIIDNAMDEAVA 93

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVS 117
           GYAD+I V+L  +G  TV+DNGRGIP + H +    S  EVIMT+LH+GGKF+ K+Y+ +
Sbjct: 94  GYADLIDVSLERNGYLTVTDNGRGIPVENHPQMLDKSTLEVIMTQLHSGGKFDGKAYQTA 153

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+SVVNALS  +++ + RE  +Y   F  GI  + L   G   N  GT V F P
Sbjct: 154 GGLHGVGISVVNALSDDMEVEVARERKLYRQRFSRGIPQSRLEDLGYVYNRRGTRVRFHP 213

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIE 230
            S+IF     F+ + +    R  ++L   V+I               P +    +  G++
Sbjct: 214 DSEIFGEKAAFDPEKIYEMARSKAYLFGGVKIRWNCDPVILEGTKNIPEKAVFHFPDGLK 273

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            ++    + +  +       +      + SI+ A+ W+ G +  V  + N IP ++GGTH
Sbjct: 274 DYLLSSLKDEYRVTSEIFSGKTKHYNDHSSIEWAIAWHGG-NPYVQSYCNTIPTREGGTH 332

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             GLR AL R + SY E     +     +  DD      ++LS+ + +P F  QTK++L 
Sbjct: 333 EIGLRQALLRGLKSYAELIGNKRAA--VITSDDVMISTAAILSVFIKNPEFVGQTKDRLA 390

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           + E + +VE+ + D    WL   P E+  ++  V++ +  R   R+ R+   RK  +   
Sbjct: 391 TIEAQRIVENAIRDPFDHWLTNSPQESTKLLDWVIERAEERIRRRQDRE-INRKTAVRKL 449

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +KM
Sbjct: 450 RLPGKLADCSQNCAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAAHEKM 509

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            SSQ IG LI ALG G  +  +    LRY +IIIMTDADVDGAHI +LL+TFFF++MP L
Sbjct: 510 NSSQTIGDLILALGCGT-RSKYREKDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDL 568

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           I  G LY+  PPLY I++G  + Y +D+    + L  +   +        KG
Sbjct: 569 IRQGHLYLAVPPLYRISQGGKVAYARDDTHKNELLKTEFTGKAKIEIGRFKG 620



 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEP 787
           G+  I + R+KGLGEM A QL ETT++P  R+LLRV I  A   +       LMG + E 
Sbjct: 609 GKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSIDIAEMQETKHTVESLMGTKSEA 668

Query: 788 RREFIQENSLPS-ALDI 803
           R  FIQENS  +  LDI
Sbjct: 669 RFRFIQENSTFASNLDI 685


>gi|34396102|gb|AAQ65248.1| DNA gyrase subunit B [Mesoplasma tabanidae]
          Length = 539

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/540 (41%), Positives = 325/540 (60%), Gaps = 11/540 (2%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
                GLHH+++E++DN+IDE+L GY   I VTL  +GS TV+DNGRG+P  +H   G  
Sbjct: 1   VTDVRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADNGRGVPIGMHS-TGRP 59

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
             EVI + LHAGGKF    YK SGGLHGVG SVVNALS    + I R+  + E+ F NG 
Sbjct: 60  TPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTIYRDKKVNEIEFTNGG 119

Query: 155 LDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
             N PL   G   N +GT V FLP   IF+   FN+ T+  RL+E + LNS ++I++ DK
Sbjct: 120 KLNIPLTEVG-TTNRSGTIVNFLPDDSIFNTTKFNFTTISERLKESALLNSGLKITITDK 178

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
            + +  E     + G+  FV  L       +  P+ I G    I+ ++ +++ + ++E +
Sbjct: 179 VNDKFVEYQF--ENGLVEFVKELSSEFT-HITDPVVITGESKRIASEICIQYTEDFNETI 235

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           L F NN+   DGGTH++G +S L R I  Y + +   K     +  +D REG  +++++K
Sbjct: 236 LGFANNVKTGDGGTHITGFKSGLVRAINDYAKNNKILKDKDPRLDSNDLREGLVAIVTVK 295

Query: 334 MPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +P+    +  QTK KL + + ++ VE    D ++ WL E+ + A  I++K + A   R+ 
Sbjct: 296 IPEDLIEYEGQTKGKLGTPDAKTAVEQVTYDFMNFWLIENKVPATKIIEKAMLARRAREE 355

Query: 392 ARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AR+AR   R  KG     ++ GKL     R  + +EL+LVEGDSAGGSAK GR R  QAI
Sbjct: 356 ARKARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELYLVEGDSAGGSAKSGRDRTFQAI 415

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPLRGK++N E+A+  +++ ++EI T+ITA+G GIG   FD++ + Y K+IIMTDAD DG
Sbjct: 416 LPLRGKVINSEKAKLTELMKNEEIQTIITAIGAGIG-QDFDVSDINYGKVIIMTDADTDG 474

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-GKSLQYVKDEESLEDYLINQSLS 569
           AHI+TLLLTFF+R M  LI N  ++I  PPLY +T   +   Y+ DE+ L D L     +
Sbjct: 475 AHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADRKFIYLWDEQELADLLKQLLKN 534


>gi|218550279|ref|YP_002384070.1| DNA topoisomerase IV subunit B [Escherichia fergusonii ATCC 35469]
 gi|218357820|emb|CAQ90464.1| DNA topoisomerase IV, subunit B [Escherichia fergusonii ATCC 35469]
          Length = 630

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 215/583 (36%), Positives = 320/583 (54%), Gaps = 12/583 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFSGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            GK + Y   EE  E  L      +        KG+   N ++
Sbjct: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 99/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKH 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAVMDMLLAKKRSEDRRNWLQE 621


>gi|311278050|ref|YP_003940281.1| DNA topoisomerase IV, B subunit [Enterobacter cloacae SCF1]
 gi|308747245|gb|ADO46997.1| DNA topoisomerase IV, B subunit [Enterobacter cloacae SCF1]
          Length = 631

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/646 (35%), Positives = 343/646 (53%), Gaps = 19/646 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G IY ++F NG     L VTG+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVNVRRDGQIYSIAFENGEKVEELHVTGTVGKRNTGTSVHFWPDESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D+ +   +        G+  ++         L
Sbjct: 177 SPRFSVSRLTHLLKAKAVLCPGVEIVFKDRVNDSEQTWCY--ADGLNDYLCEAVNGLPLL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFVGSFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAELLAEMAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F +   +++  G +Y+  PPLY
Sbjct: 469 IGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAVVKEGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L      +        KG+   N ++        +D   +
Sbjct: 529 RIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ---LRETTLDPNTR 585

Query: 603 DFYPNHDKTFIEQ--AVISGVFNCESDQEINVSLASKLANRLNFIA 646
                      EQ    +  +   +   E   +   +  +  +  A
Sbjct: 586 RLVQLTISDEDEQQTDAVMDMLLAKKRSEDRRNWLQEKGDMADLEA 631



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 99/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAELLAEMAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAVVKE 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q D +   L+  +  E RR ++QE
Sbjct: 578 TTLDPNTRRLVQLTISDEDEQQTDAVMDMLLAKKRSEDRRNWLQE 622


>gi|269137554|ref|YP_003294254.1| DNA topoisomerase IV subunit B [Edwardsiella tarda EIB202]
 gi|238551759|gb|ACR44351.1| topoisomerase IV [Edwardsiella tarda]
 gi|267983214|gb|ACY83043.1| DNA topoisomerase IV subunit B [Edwardsiella tarda EIB202]
 gi|304557627|gb|ADM40291.1| Topoisomerase IV subunit B [Edwardsiella tarda FL6-60]
          Length = 631

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 237/648 (36%), Positives = 344/648 (53%), Gaps = 22/648 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHPDQSLEVIDNGRGMPVDIHPEEGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G IY+M+F NG     L V+G+ G  +TGT V F P +  F 
Sbjct: 117 ISVVNALSRRVEVSVRRDGQIYQMAFENGEKVEDLHVSGTVGRRNTGTSVHFWPDAQFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D  +   +      + G+  ++         L
Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEILFRDLVNGSEQRWCY--QDGLTDYLMESVNGLVTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEQPFTGTFASDTEAVDWALLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+++ +  ++++       RA     RK +    +LPGKLADCS +D 
Sbjct: 354 AFSLWLNQNVQSAELLAELAINSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCSAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY
Sbjct: 469 IGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVQAGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y   EE     L      +        KG+   N L+         +  + 
Sbjct: 529 RIDLGKEVFYALSEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLR-------ETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  +  IE   +        D  +    A    N L      +E
Sbjct: 582 PNTRRLVQLTIEDEDMERTVAV-MDMLLAKKRAEDRRNWLQENGNLAE 628



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 4/77 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VE 786
           +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I   D  +   +   L+  +  E
Sbjct: 555 KKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTIEDEDMERTVAVMDMLLAKKRAE 614

Query: 787 PRREFIQENSLPSALDI 803
            RR ++QEN   + LD+
Sbjct: 615 DRRNWLQENGNLAELDV 631


>gi|220912381|ref|YP_002487690.1| DNA topoisomerase IV subunit B [Arthrobacter chlorophenolicus A6]
 gi|219859259|gb|ACL39601.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrobacter chlorophenolicus
           A6]
          Length = 702

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 238/665 (35%), Positives = 342/665 (51%), Gaps = 57/665 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I +
Sbjct: 4   SSEYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGFGHDIRI 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  + D+GRGIP D   + G++  EV+ T+LHAGGKF   SY  SGGLHGVG S
Sbjct: 63  ILHADNSVEIHDDGRGIPIDKEPKTGLTGVEVVFTKLHAGGKFGGGSYTASGGLHGVGAS 122

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGIL---------------------DNPLVVTGSA 165
           VVNALSS L + + R G  Y MSF  G                       D+ L + G A
Sbjct: 123 VVNALSSRLDVEVDRGGKTYRMSFRRGEPGRFKDVGSKTDPAAAFTPFVDDSVLDIVGKA 182

Query: 166 GN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------ 217
               TGT + +     IF     F+YD L  R R+ SFL   +++++ D+R         
Sbjct: 183 KRGVTGTRIRYWADRQIFTPDAKFSYDELAARARQTSFLVPGLKLTVRDERRVPGTAGEA 242

Query: 218 -PREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDN---------I 257
            P E    + GGI  FV +             H     +  + +   R +          
Sbjct: 243 GPHEEVFHHDGGISEFVDFLAADPPVTDVWRLHGSGKFKETVPVLDERGHSQLAEVERDC 302

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRS 316
            +D+A+RW  GY   V  F N I    GGTH SG   AL +     VE +    K     
Sbjct: 303 EVDVALRWGIGYDSTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVETNARKLKAGNDK 362

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           +  DD   G T+VL++++ +P+F  QTKE L +S VR++V   V   + A L       K
Sbjct: 363 IEKDDIFAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVAKVVEREIVAKLNSANRNDK 422

Query: 377 I----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +++K++     R +AR  ++  RRK  L+ +S+P KLADC   D ++SELF+VEG
Sbjct: 423 AQSALLLEKIVSEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVERSELFIVEG 482

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSA G+AK  RS + QA+LP+RGKILNV++A    MLS+ E   LI  +G G G+  FDI
Sbjct: 483 DSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRS-FDI 541

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
           +  RY K+I+MTDADVDGAHIRTLLLT FFR M  +I  G ++   PPL+ +    + Q 
Sbjct: 542 SAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIEEGRVFAAVPPLHRVEVVNAGQK 601

Query: 553 VKDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
             +      +  ++  L+   +     K  I +      +D     +  +   +    K 
Sbjct: 602 ANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRMLRKV 661

Query: 612 FIEQA 616
            I + 
Sbjct: 662 GIAEL 666



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 722 LLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LL  +   G++    +QRYKGLGEM+A QL ETT++P  R L +V I +  +A+  F  L
Sbjct: 617 LLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRMLRKVGIAELEEAEKTFDLL 676

Query: 781 MGDEVEPRREFIQENSLPSALD 802
           MG +V PR++FI   +  ++LD
Sbjct: 677 MGSDVSPRKDFIIAGA--ASLD 696


>gi|256825419|ref|YP_003149379.1| DNA topoisomerase IV subunit B [Kytococcus sedentarius DSM 20547]
 gi|256688812|gb|ACV06614.1| DNA topoisomerase IV subunit B [Kytococcus sedentarius DSM 20547]
          Length = 710

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 240/704 (34%), Positives = 355/704 (50%), Gaps = 57/704 (8%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +     SSYDA  +Q+L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+A
Sbjct: 8   ASTTSTSSYDARHLQVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGFA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + VTL+ DGS  V+D+GRG+P D+    G++  E++ T+LHAGGKF   SY  SGGLH
Sbjct: 67  TGVDVTLHADGSVEVADDGRGVPVDIEPRSGLTGVELVYTKLHAGGKFGGGSYTASGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------------DNPLV 160
           GVG SVVNALSS L + + R G  + MSF  G                        + L+
Sbjct: 127 GVGASVVNALSSRLDVEVDRGGKTWVMSFRRGEPGVFDDAGGEPSPDNPFTPFTTGSELI 186

Query: 161 VTGSAGN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---- 214
             G      TGT V +     IF +  +F++  L  R R+ SFL   ++I L DKR    
Sbjct: 187 ERGKTKRGVTGTRVRYWADPQIFLADAEFSHRQLTDRARQTSFLVPGLRIGLTDKRRIPG 246

Query: 215 ---SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------ 253
                     T  + GGI  FV YL   +       ++  G+                  
Sbjct: 247 TPGETATHTETFLHSGGITEFVDYLAPDQAVTDTWRLQGTGTFTETVPVLDDAGHMVPTE 306

Query: 254 -RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSK 311
              +  +D+A+RW  GY      F N I    GGTH++G   AL + +   VE +    K
Sbjct: 307 VERDCEVDIALRWGTGYDAVQRSFVNIIATPKGGTHVAGFEQALLKVVRKQVEANSRKLK 366

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
             K  V  DD   G T+V+++++ +P+F  QTKE L +S VRS+V   V   L+      
Sbjct: 367 PGKDKVEKDDALAGLTAVVTVRLAEPQFEGQTKEVLGTSAVRSIVSKGVETELTEIFTSS 426

Query: 372 PLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
               K     +++K++     R +AR  ++  RRK  L+ +SLP KL DC   + + SEL
Sbjct: 427 ARGRKQQAGAVLEKIVTEMKSRVSARMHKETQRRKNALETSSLPTKLVDCRSTETEASEL 486

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSA G+AK  R  + QA+LP+RGKILN ++A    ML ++E   +I ++G G G+
Sbjct: 487 FIVEGDSALGTAKLARQSDFQALLPIRGKILNTQKASVADMLGNEECAAIIQSIGAGSGR 546

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
             FD+   RY KIIIMTDADVDGAHIRTLLLT FFR M  ++  G ++   PPL+ I   
Sbjct: 547 S-FDLASARYGKIIIMTDADVDGAHIRTLLLTLFFRYMRPMVDAGRVFAAVPPLHRIEVV 605

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
              +      +  +  + + L+         K  + +      +D     +  +   +  
Sbjct: 606 NRGKANDYVYTYSEAHLRKELARLKRNGRTLKDPLQRYKGLGEMDADQLAETTMDPAHRT 665

Query: 608 HDKTFIEQAVI-SGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +  +  A +   VFN     ++       ++N     AE+ +
Sbjct: 666 LRRITMRDAQVGEDVFNLLMGSDVAPRKEFIISNAATLDAERID 709



 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 2/67 (2%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QL ETT++P  R+L R+ + DA   +D+F+ LMG +V PR+EFI  N
Sbjct: 640 LQRYKGLGEMDADQLAETTMDPAHRTLRRITMRDAQVGEDVFNLLMGSDVAPRKEFIISN 699

Query: 796 SLPSALD 802
           +  + LD
Sbjct: 700 A--ATLD 704


>gi|28897204|ref|NP_796809.1| DNA topoisomerase IV subunit B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153840089|ref|ZP_01992756.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363417|ref|ZP_05776267.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus K5030]
 gi|260879174|ref|ZP_05891529.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898011|ref|ZP_05906507.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901428|ref|ZP_05909823.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|28805413|dbj|BAC58693.1| topoisomerase IV, subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746309|gb|EDM57374.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|308086337|gb|EFO36032.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|308094171|gb|EFO43866.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106489|gb|EFO44029.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|308112928|gb|EFO50468.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus K5030]
 gi|328471973|gb|EGF42850.1| DNA topoisomerase IV subunit B [Vibrio parahaemolyticus 10329]
          Length = 626

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 216/591 (36%), Positives = 325/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+  DK + +  +       K  +   V    
Sbjct: 172 KYFDSANFSVTRLVNNLRAKAVLCPGLEITFTDKVNNKDYQWYYEDGLKDYLAEGVKGYP 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +              N ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 VLPEEPFTGEFSADTEAANWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+K+ DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS +++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLDSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  +  L   S  +        KG+   N ++
Sbjct: 523 MPPLYRIDCGKEVFYALDDDEKDGILERLSKKKAKINVQRFKGLGEMNPIQ 573



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D+    ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPIQLRETTMDPNTRRLVQLTIDDSEATMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQNN 620


>gi|329890024|ref|ZP_08268367.1| DNA topoisomerase IV, B subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845325|gb|EGF94889.1| DNA topoisomerase IV, B subunit [Brevundimonas diminuta ATCC 11568]
          Length = 661

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/639 (35%), Positives = 342/639 (53%), Gaps = 20/639 (3%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG 72
            SI++L+GL+ V+KRP MYIG TD E  LHH+  EVLDNA+DE++  +A +ITV L+ +G
Sbjct: 25  SSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLFAEVLDNAMDEAVAKHAKLITVDLDAEG 83

Query: 73  SCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNAL 131
             +V D+GRGIP D H +  G SA EV+MT LH+GGKF+ K+Y+ SGGLHGVGVSVVNAL
Sbjct: 84  YLSVRDDGRGIPVDPHPKHPGKSALEVVMTVLHSGGKFSGKAYETSGGLHGVGVSVVNAL 143

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYD 190
           S  L + + R+G  +  SF  G +  P+   G +    GT + F P   IF V   F   
Sbjct: 144 SESLDVTVWRDGFEWRQSFSRGHVQAPIQQVGPSKKK-GTLIRFKPDEQIFGVGATFKPA 202

Query: 191 TLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            L    R  ++L   V+I             P + T+ + GG+   ++      + +   
Sbjct: 203 RLFRMTRAKAYLFRGVEIRWTCAPERITDATPAQATLHFPGGLADALAERVGELETVTPV 262

Query: 247 P-IRIQGSRDNISIDLAMRW----NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
              R++   +  +++ A+ W           +  + N +   DGGTH +G R+AL + + 
Sbjct: 263 FAGRVERKGEAGALEWAVTWSPIGFGDADSFIASYCNTVSTPDGGTHEAGFRAALVKGLK 322

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y E     +  +  +  +D      +++S+ + +P F  QTK++L S E + + E  + 
Sbjct: 323 AYGELINEKRAAQ--ITAEDVIANAGALISVFIRNPEFQGQTKDRLSSPEGQRLTEQLLR 380

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D    WL E P +A  ++  V+D +  R   R+ ++  +R        LPGKL+DCS + 
Sbjct: 381 DPFDHWLTESPKQANALLGFVIDRAEDRLRRRKDKE-VQRAAATRKLRLPGKLSDCSRQA 439

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            + +ELF+VEGDSAGGSAKQ R R  QAILPLRGKILNV  A  DK+ ++ E+  L+ AL
Sbjct: 440 AEGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVASATADKLRANVELTDLMLAL 499

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G   G   F ++ LRY +++IMTDADVDGAHI  LL+TFF+R MP LI  G LY+  PPL
Sbjct: 500 GVQAGSR-FSVDDLRYERVVIMTDADVDGAHIAALLITFFYRSMPDLIRQGRLYMALPPL 558

Query: 542 YGITRGKSLQYVKDEESLEDYL-INQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKID 598
           Y I+ G   +Y +D+   ++ L       +         G +  + L+    D     + 
Sbjct: 559 YRISAGPLSEYARDDAHRDELLATTFKGKKTEIGRFKGLGEMMASQLKETTMDPKKRTLA 618

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           ++         +  +E+ +        +  + N   A  
Sbjct: 619 RIALPDSEEEIEDLVERLMGRKAEARYNFIQENARFAQA 657



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 5/85 (5%)

Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD-ASQADDLFSR 779
            LL T F  G+K   + R+KGLGEM ASQL ETT++P  R+L R+ + D   + +DL  R
Sbjct: 578 ELLATTFK-GKK-TEIGRFKGLGEMMASQLKETTMDPKKRTLARIALPDSEEEIEDLVER 635

Query: 780 LMGDEVEPRREFIQENSLP--SALD 802
           LMG + E R  FIQEN+    + LD
Sbjct: 636 LMGRKAEARYNFIQENARFAQADLD 660


>gi|168238136|ref|ZP_02663194.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737821|ref|YP_002116136.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194713323|gb|ACF92544.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289017|gb|EDY28388.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 630

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 215/583 (36%), Positives = 317/583 (54%), Gaps = 12/583 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFNGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAEQLAEMAIASAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+ QE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAPQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            GK + Y   EE     L      +        KG+   N ++
Sbjct: 531 LGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 106/294 (36%), Gaps = 46/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   +++        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 457 APQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKN 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I+D      + +   L+  +  E RR ++QE    + LD+
Sbjct: 577 TTLDPNTRRLVQLTISDEDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLADLDV 630


>gi|315940103|gb|ADU56230.1| DNA gyrase subunit B [Nocardia rhamnosiphila]
          Length = 505

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/510 (45%), Positives = 323/510 (63%), Gaps = 34/510 (6%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T GE GLHH+I+EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP  +H 
Sbjct: 1   MYIGST-GERGLHHLIWEVVDNSVDEAMAGHATRVEVTLLADGGVQVVDDGRGIPVAMHA 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           + GI   EV+MT+LHAGGKF+  SY VSGGLHGVG+SVVNALSS L+  +  +G  +  +
Sbjct: 60  Q-GIPTIEVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQT 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + + +    L V G     TGT + F     +F    +N++T+  RL+E++FLN  + I 
Sbjct: 119 YKDAVP-GQL-VQGEPTKTTGTTIRFWADPAVFETTTYNFETVSRRLQEMAFLNKGLTIV 176

Query: 210 LIDKR-----------------------------SPEPREITMFYKGGIEAFVSYLDRHK 240
           L D+R                              P+ +  T  Y GG+E FV +++R K
Sbjct: 177 LTDERVSDTEITDEVVSDTAEAPKHDDNGEKAAAEPKVKTRTYHYPGGLEDFVRHINRTK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +P+  S +   G      +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +
Sbjct: 237 QPIHNSVVSFNGKGPGHELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVV 296

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y ++    K+   ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   
Sbjct: 297 NRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRSC 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ W E +P +AK IV K + ++  R AAR+AR+L RRK   DI  LPGKLADC  +
Sbjct: 357 NEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARELVRRKSATDIGGLPGKLADCRSK 416

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA
Sbjct: 417 DPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITA 476

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            GTGI  D FDI KLRYHKI++M DADVDG
Sbjct: 477 FGTGI-HDEFDIAKLRYHKIVLMADADVDG 505


>gi|323491055|ref|ZP_08096247.1| DNA topoisomerase IV subunit B [Vibrio brasiliensis LMG 20546]
 gi|323314719|gb|EGA67791.1| DNA topoisomerase IV subunit B [Vibrio brasiliensis LMG 20546]
          Length = 626

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/591 (36%), Positives = 324/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNKGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+  DK +            K  +   V    
Sbjct: 172 SYFDSPNFSVTRLVNNLRAKAVLCPGLEITFTDKVNGNDYRWLYEDGLKDYLAEGVKGYA 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         +    N ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 VLPEEPFTGEFSAETEAANWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+KM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGDDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDSFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSPDQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  D+ +++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDTDNLDGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDDEKEGILERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D+    ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSDATMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRTWLQSN 620


>gi|119964148|ref|YP_947523.1| DNA topoisomerase IV subunit B [Arthrobacter aurescens TC1]
 gi|119951007|gb|ABM09918.1| putative DNA gyrase subunit B [Arthrobacter aurescens TC1]
          Length = 702

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 242/665 (36%), Positives = 342/665 (51%), Gaps = 57/665 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S Y+A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+L G+   I V
Sbjct: 4   SSEYNARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNAVDEALAGFGHDIKV 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  + D+GRGIP D+  + G+S  EV+ T+LHAGGKF   SY  SGGLHGVG S
Sbjct: 63  ILHADNSVEIHDDGRGIPVDVEPKTGLSGVEVVFTKLHAGGKFGGGSYTASGGLHGVGAS 122

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGIL-------DNP--------------LVVTGSA 165
           VVNALSS L +++ R    Y+MSF  G           P              L V G A
Sbjct: 123 VVNALSSRLDVQVDRGSKTYQMSFRRGEPGRFIDSGAKPGPNATFEPFVENSVLDVVGKA 182

Query: 166 GN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------SP 216
               TGT V +     IF     F+YD L  R R+ SFL   ++I++ D+R         
Sbjct: 183 KRGVTGTRVRYWADRQIFTPDAKFSYDDLAARARQTSFLVPGLKITVRDERKLAGTPGEA 242

Query: 217 EPREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGS---------RDNI 257
              E    + GGI  FV +             H     +  + +              + 
Sbjct: 243 GVHEEVFHHDGGISEFVEFLAADSGVTDVWRLHGSGKFKETVPVLDENGHSKIAEVERDC 302

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRS 316
            +D+A+RW  GY   +  F N I    GGTH SG  +AL +     VE +    K     
Sbjct: 303 EVDIALRWGIGYETTMRSFVNIIATPKGGTHQSGFEAALLKTFRKAVETNARKLKAGNDK 362

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           +  DD   G T+VL++++ +P+F  QTKE L +S VR++V   V   ++A L       K
Sbjct: 363 IEKDDILAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVAKVVEKEITARLGSANRNDK 422

Query: 377 I----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +++K++     R +AR  ++  RRK  L+ +S+P KLADC   D  +SELF+VEG
Sbjct: 423 AQSALLLEKMVAEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVARSELFIVEG 482

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSA G+AK  RS + QA+LP+RGKILNV++A    MLS+ E   LI  +G G G+  FDI
Sbjct: 483 DSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRS-FDI 541

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
              RY K+I+MTDADVDGAHIRTLLLT FFR M  ++  G ++   PPL+ +      Q 
Sbjct: 542 EAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVFAAVPPLHRVEVINPGQK 601

Query: 553 VKDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
             +      +  ++  LS   +     K  I +      +D     +  +   +    K 
Sbjct: 602 ANEMIYTYSEAELHVLLSNLAKEGKRYKEPIQRYKGLGEMDAQQLAETTMDPRHRTLRKV 661

Query: 612 FIEQA 616
            IE A
Sbjct: 662 GIESA 666



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 3/82 (3%)

Query: 722 LLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LL  +   G++    +QRYKGLGEM+A QL ETT++P  R+L +V I  A +A+++F  L
Sbjct: 617 LLSNLAKEGKRYKEPIQRYKGLGEMDAQQLAETTMDPRHRTLRKVGIESAQRAEEVFDLL 676

Query: 781 MGDEVEPRREFIQENSLPSALD 802
           MG +V PR+EFI   +  + LD
Sbjct: 677 MGSDVAPRKEFIIAGA--ATLD 696


>gi|106734227|gb|ABF82590.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. A19]
          Length = 488

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 251/491 (51%), Positives = 346/491 (70%), Gaps = 4/491 (0%)

Query: 29  SMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH 88
            MYIG T    GLHH+++E++DN+IDE+L GY D I VT+    S  V DNGRGIP D+ 
Sbjct: 1   GMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVDIQ 59

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
           ++ G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ +KR   +Y  
Sbjct: 60  EKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKLYYQ 119

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQ 207
           ++  G+    L + G    +TGT + F P  +IF    +++YD L  RLREL+FLN  + 
Sbjct: 120 AYHRGVPVADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNKGLT 178

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           I + D R+ EP   +  Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A+++ND
Sbjct: 179 IEITDDRADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQYND 238

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G+  N+  FTNNIP  +GGTH +G ++ALTR I  Y +K    K+   ++ G+D REG T
Sbjct: 239 GFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGEDVREGMT 298

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++SIK P+P+F  QTK KL +S+ R+  ++  +     ++ E+P  A+ IV+K + AS 
Sbjct: 299 AIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMMASR 358

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA+RAR+LTRRKGVL+++SLPGKLADCS RD   SE+++VEGDSAGGSAK GR R  
Sbjct: 359 ARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRDRHF 418

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMTDAD
Sbjct: 419 QAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMTDAD 477

Query: 508 VDGAHIRTLLL 518
           VDGAHIRT ++
Sbjct: 478 VDGAHIRTPVI 488


>gi|190573692|ref|YP_001971537.1| DNA topoisomerase IV subunit B [Stenotrophomonas maltophilia K279a]
 gi|190011614|emb|CAQ45233.1| putative topoisomerase IV subunit B [Stenotrophomonas maltophilia
           K279a]
          Length = 629

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/565 (39%), Positives = 319/565 (56%), Gaps = 13/565 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I +
Sbjct: 2   NARYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHARSIEI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGS  VSD+GRG+P D+H EE I   E+I+TRLHAGGKF+  +Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSVEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNNNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +++ IKREG  + ++F NG    PL V GS    +TGT V F P    F   
Sbjct: 118 VVNALSTLVEVHIKREGAEHRITFRNGDRATPLEVVGSVGKKNTGTRVRFWPDPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H LR  + L   + + L D+ + E    T +Y+ G+  ++      ++ L  
Sbjct: 178 KFAVRALKHLLRAKAVLCPGLTVKLTDEATGEV--DTWYYEDGLRDYLKLEMGERESLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A+ W          + N IP    GTH++GLR+ LT  +  + +
Sbjct: 236 DLFVGNLKKDTEVVDWAVAWLPEGELVQESYVNLIPTAQHGTHVNGLRTGLTEALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  + VLS+KM DP+FS QTKE+L S +    VE   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
             L ++    + I +  ++ +  R        L  RK V    +LPGKLADC  +D  ++
Sbjct: 355 LLLNQNVELGEKIAQIAIERASARLKTE---KLVVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAI+PLRGKILN      + +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVSSNSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI+ LRY K+II+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ I 
Sbjct: 472 GKD--DISGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDAGHVFVAMPPLFRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSE 570
            GK + Y  DEE     L      +
Sbjct: 530 VGKQVFYALDEEEKRSMLDKIEREK 554



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            S+LD I     KG I++ R+KGLGEMN  QL E+T++PDTR L+++ + D  Q   L  
Sbjct: 544 RSMLDKIEREKIKGAINVTRFKGLGEMNPPQLRESTIHPDTRRLVQLTVDDREQTSSLMD 603

Query: 779 RL 780
            L
Sbjct: 604 ML 605


>gi|167077351|gb|ABZ10897.1| DNA gyrase subunit B [Burkholderia cenocepacia]
          Length = 629

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 275/632 (43%), Positives = 393/632 (62%), Gaps = 20/632 (3%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTE 172
           VS VNALSSWL+L ++R+G    M F  G+              +P++VTG    + GTE
Sbjct: 1   VSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTE-NRGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ F
Sbjct: 60  VHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V ++++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GL
Sbjct: 118 VEFINKTKSTLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGL 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPG
Sbjct: 238 RAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS+
Sbjct: 298 KLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSE 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           +I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G
Sbjct: 358 QIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERG 417

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           ++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L     
Sbjct: 418 YVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELAR 477

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
             L    +I+     +D   +E AV+ GV    S++E   + A  L   L+  A K+E  
Sbjct: 478 SYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEVR 536

Query: 653 ----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
               +        + V+R   G     V++     +   +     +N  +        + 
Sbjct: 537 VVPSYDPVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIK 596

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
                + +    S +  + +   + +S QRYK
Sbjct: 597 RGERSMAVADFKSAMKWLLADAERNVSKQRYK 628


>gi|327395271|dbj|BAK12693.1| topoisomerase IV subunit B ParE [Pantoea ananatis AJ13355]
          Length = 631

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 232/650 (35%), Positives = 345/650 (53%), Gaps = 22/650 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+A  I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MSQSSYNAGDIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V+D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVTDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R G IY ++F NG     L VTG+ A  +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVNVRRNGEIYSIAFENGEKVQDLTVTGTVAKRNTGTSVHFWPDEHFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   DK +   +      + G+  ++         L
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDKLNNTEQRWCY--EDGLTDYLCEAVNGLPTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFVGTFAGDIEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V + V D
Sbjct: 295 FCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSAVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ NG +Y+  PPLY
Sbjct: 469 IGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DE+  E  L      +        KG+   N L+         +  + 
Sbjct: 529 RIDLGKEVYYALDEDEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLR-------ETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                  +  +    I        D  +    +    N L    +K++  
Sbjct: 582 PNTRRLVQLTVSDDDIEQTLRV-MDMLLAKKRSEDRRNWLQEKGDKADIE 630



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 11/84 (13%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDAS 771
            LD     G       +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ +   D  
Sbjct: 539 ALDEDEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTVSDDDIE 598

Query: 772 QADDLFSRLMGDE-VEPRREFIQE 794
           Q   +   L+  +  E RR ++QE
Sbjct: 599 QTLRVMDMLLAKKRSEDRRNWLQE 622


>gi|170765612|ref|ZP_02900423.1| DNA topoisomerase IV, B subunit [Escherichia albertii TW07627]
 gi|170124758|gb|EDS93689.1| DNA topoisomerase IV, B subunit [Escherichia albertii TW07627]
          Length = 630

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 220/647 (34%), Positives = 332/647 (51%), Gaps = 20/647 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFNGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  +
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFT 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAELLAEMAIASAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y   EE  E  L       E       K  + +      ++     +  +    
Sbjct: 531 LGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +  I         +   D  +    A    N L    + +E  
Sbjct: 584 RRLVQLTISDEDDQRT-DAVMDMLLAKKRAEDRRNWLQEKGDMAEIE 629



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 100/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   +++        +K V+ K             D   +D
Sbjct: 349 VVKDAFTLWLNQNVQAAELLAEMAIASAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKH 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I+D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTISDEDDQRTDAVMDMLLAKKRAEDRRNWLQE 621


>gi|294083673|ref|YP_003550430.1| DNA topoisomerase IV subunit B [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663245|gb|ADE38346.1| DNA topoisomerase IV, B subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 662

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/573 (39%), Positives = 321/573 (56%), Gaps = 18/573 (3%)

Query: 1   MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           MSD       + +YDA +I++L+GL+ V+ RP MYIG TD E   HH+  E+LDN++DE+
Sbjct: 3   MSDLFGNAASDDNYDASNIEVLEGLEPVRHRPGMYIGGTD-ERAYHHLAAEILDNSMDEA 61

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A+ I   L    + ++ DNGRG+PT  H +    SA EVIMT LHAGGKF+ KSY 
Sbjct: 62  VAGHANRIDFHLESATTLSIRDNGRGMPTGNHPKFPDKSAVEVIMTTLHAGGKFSGKSYA 121

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNALSS L + I R+  +Y+ SF  G   + L   G A N  GT VTF
Sbjct: 122 TSGGLHGVGASVVNALSSALLVEIARDKKLYQQSFSRGKPLDALTEIGGAPNRRGTTVTF 181

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------MFYKGG 228
            P ++IF     F   TL    R  ++L + V+I      +             + Y GG
Sbjct: 182 TPDTEIFGEKAHFRPSTLYRMARSKAYLFAGVEIRWQCDPALLADNDPVPAEAVLHYPGG 241

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND-GYHENVLCFTNNIPQKDGGT 287
           +  +++ + R K  ++ +P       D    + A+ W   G       + N +P   GGT
Sbjct: 242 LADYLNDVTRDKALMVSTPFAEIAELDGQKFEWAITWLGAGEDGFFHSYCNTVPTPSGGT 301

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G R A+ R + +Y + +   K     +  DD       +LS+ + DP+F  QTK++L
Sbjct: 302 HETGFRQAIVRALRNYGDLAGNRKAAD--LTADDVLANTGVMLSVFLRDPQFQGQTKDRL 359

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VS++   + E  V D    WL      A  +++  ++        R+      RK     
Sbjct: 360 VSTDATRMTEQAVRDRFEHWLSADSARANFLLEAAIER-AEERKRRKKEKEVARKSATRR 418

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKLADC+  D   +ELFLVEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A  +K
Sbjct: 419 LRLPGKLADCTSNDLDLTELFLVEGDSAGGSAKQARNRKTQAVLPLRGKILNVASATVEK 478

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +QE+  L  ALG   G+D F ++ LRY +++IMTDADVDGAHI  LL+T+F+R+MP 
Sbjct: 479 LSGNQELSDLALALGVRPGKD-FKVDDLRYGRVVIMTDADVDGAHIAALLMTYFYREMPQ 537

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           LI  G LY+ +PPLY I +G    Y  D+   +
Sbjct: 538 LIEAGRLYLAQPPLYRINQGGKTLYALDDAQRD 570



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 13/93 (13%)

Query: 724 DTIFSIG--RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQA----- 773
           DT+   G  ++G I + R+KGLGEM  +QL ETT+NP +R LL+V++   D+  A     
Sbjct: 570 DTLLETGFDKRGKIDISRFKGLGEMPPAQLKETTMNPASRRLLKVELPQRDSIGADLRRT 629

Query: 774 -DDLFSRLMGDEVEPRREFIQENSLP--SALDI 803
            D L + LMG + E R  +I++++    + LD+
Sbjct: 630 TDQLVNTLMGKKAELRFGYIRDHAEDALANLDV 662


>gi|90580747|ref|ZP_01236550.1| DNA topoisomerase IV subunit B [Vibrio angustum S14]
 gi|90438015|gb|EAS63203.1| DNA topoisomerase IV subunit B [Vibrio angustum S14]
          Length = 627

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 221/586 (37%), Positives = 325/586 (55%), Gaps = 14/586 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + + SY+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTDQSYNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGHARKV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVVDDGRGMPVDIHPEEGVSGVELILCKLHAGGKFSGKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFS 183
           +SVVNALS  +++ +KR+G +Y+++F NG   + L V G+ G    GT V F P    F 
Sbjct: 117 ISVVNALSKRVEVTVKRDGQVYQIAFENGDKVSDLEVIGTCGRRAKGTRVHFWPDPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+  L+  + L   ++I   +K + E        + G++ +++   +    L
Sbjct: 177 SAKFSVSRLKSNLKAKAVLCPGLEIVFTNKITDETIRWCY--EDGLKDYLAEGVKGYTLL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     S    + D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEEPFTGVFSSQTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+K+ DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTADDIWERCAYVLSVKIQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL E P  A+ + +  +  +       RA     RK +    +LPGKLADCS++D 
Sbjct: 354 AFSLWLNERPQLAEQLAEVCIANAH---RRMRASKKVVRKKIASGPALPGKLADCSQQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWEVSADQVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY KI ++ DAD DG HI TLL   F +   +L+  G ++I  PPLY
Sbjct: 469 LGIDPDSDDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFETLVRAGHVFIAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I  GK + Y  DE      L               KG+   N L+
Sbjct: 529 RIDLGKEVYYALDEAEKNSILERLKGKRGKVNVQRFKGLGEMNPLQ 574



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 106/288 (36%), Gaps = 54/288 (18%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ +   L + L    ++        SK V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNERPQLAEQLAEVCIANAHRRMRASKKVVRKKIASGPALPGKLADCSQQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++   +  ++       LN             ++   +L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILN----------TWEVSADQVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S    G +Y +I             +  +   ++    +L+  
Sbjct: 458 ASQEVHDISVALGIDPDSDDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFETLVRA 517

Query: 711 G----------------------DKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNA 747
           G                      D+ +       L      G++G +++QR+KGLGEMN 
Sbjct: 518 GHVFIAMPPLYRIDLGKEVYYALDEAEKNSILERLK-----GKRGKVNVQRFKGLGEMNP 572

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQE 794
            QL ETT++P+TR L+++ I D S+ +++   L+G +  E RR ++Q 
Sbjct: 573 LQLRETTMDPNTRRLVQLTIDDDSETNEMMDMLLGKKRAEDRRHWLQS 620


>gi|239947839|ref|ZP_04699592.1| DNA topoisomerase IV, B subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922115|gb|EER22139.1| DNA topoisomerase IV, B subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 662

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/656 (34%), Positives = 351/656 (53%), Gaps = 15/656 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + +++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE++ G+A 
Sbjct: 13  NKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDS-NAMHHLVSEVLDNAMDEAVAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           IIT+ ++ D S T+ DNGRGIP D H +    SA EVI+T LH+GGKF+   Y  +GGLH
Sbjct: 72  IITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L++ + ++G +Y  S+  G     L+   ++    GT + F P  +I
Sbjct: 132 GVGISVVNALSKHLEINVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTPDPEI 191

Query: 182 FS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLD 237
           FS    FN   +    R  ++L   V I    +            + +  G++ ++S   
Sbjct: 192 FSGKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVPSDIPKKALINFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPIR--IQGSRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRS 294
                ++       I+ + D I ++ A+ W +      +  + N +P   GGTH  GL+S
Sbjct: 252 TLDNLVIPEIFSGNIESTLDGIKLEWAICWQNNDSSAFIQSYCNTVPTPQGGTHEQGLKS 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS+ V  
Sbjct: 312 AILRGLKAYGEMIGNKKAA--NLTIEDILETASVVLSIFVAEPSFQGQTKEKLVSNGVSK 369

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ + D    +L      A  +++ V+  +  R + +  ++   RK       LPGKL
Sbjct: 370 PVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKN-ISRKNATQKLRLPGKL 428

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 429 ADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAI 488

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G L
Sbjct: 489 QDLEIALACGSLKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHL 547

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ KPPLY +T+     Y  DEE      +   LS+  +   +        ++       
Sbjct: 548 YLAKPPLYRLTQSNKTYYAGDEEEKAK--LTDKLSKASKAKIEVGRFKGLGEMMPAQLKE 605

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +    +       + F     I      +  ++    +  +   +++ I  + +
Sbjct: 606 TTMHPEKRSLLKVTLEDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELD 661



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K++       + ++      V    +      F F    K +    +      +  L  +
Sbjct: 501 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQS 560

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L D +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V +
Sbjct: 561 NKTYYAGDEEEKAKLTDKLSKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTL 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            D    D +   LMG + E R +FI E +L       S LDI
Sbjct: 621 EDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELDI 662


>gi|119713193|gb|ABL97261.1| DNA topoisomerase IV subunit B [uncultured marine bacterium
           EB0_50A10]
          Length = 631

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 213/636 (33%), Positives = 333/636 (52%), Gaps = 15/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYDA++I++L GLD VKKRP MY  DT   +   H+I EVLDN++DE+L G+   I
Sbjct: 1   MAKNSYDAEAIEVLSGLDPVKKRPGMYT-DTSNPN---HLIQEVLDNSVDEALSGHCSNI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +  DG+  VSD+GRG+P D+H E  +S  E+I+ +LHAG KF+   Y  SGGLHGVG
Sbjct: 57  KIAVLKDGNIRVSDDGRGMPVDIHPEHKVSGVELILCKLHAGAKFSGDDYNFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           VSVVNALS  L++R+KR+   ++++F NG   + L   G  G  +TGT +TF P+   F 
Sbjct: 117 VSVVNALSENLEVRVKRDSKEHQITFSNGNKVSELKEVGEVGLRNTGTSITFKPNPKYFE 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +    TL+H L+  + L   ++I   +++     +   +++ G+++++       + +
Sbjct: 177 DIEVQIKTLKHLLKAKAVLCPGLRIEFNNEK-KSNDKEKWYFEDGLKSYLVDSSEGLELV 235

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVL--CFTNNIPQKDGGTHLSGLRSALTRQIT 301
           ++  +      D   ++ A+ W+    +N L   + N IP   GG+HL+G +S L   I 
Sbjct: 236 LEHSMVCSKQSDVQELEFAINWSQKTLKNKLDETYVNLIPTPQGGSHLNGFKSGLLDSIK 295

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + +           +  DD       ++S K+ +P+F+ QTKE+L S +  S V S   
Sbjct: 296 EFCDYRN-LLPKGLKINADDVINSAIFIVSSKLQNPQFAGQTKERLDSKDHMSFVSSTTK 354

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL  H  E + I +  + ++       +  ++  RK      +LPGKL+DC+ +D
Sbjct: 355 DTFSIWLNTHTEEGEKIAELAIISAQ---TRAKVSNIVERKKTFKGPALPGKLSDCNSQD 411

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
             ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN       +++ SQEI  L TA+
Sbjct: 412 LNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESSEIIKSQEIKNLSTAI 471

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G   G    D++ LRY KI I+ DAD DG HI TLL   F R    L+  G +YI  PPL
Sbjct: 472 GVLPGNS--DLSSLRYGKICILADADSDGLHIATLLCALFLRHYKPLVQEGRIYISMPPL 529

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I  GK + Y  D++  E+ +      +        +         + + + + +D   
Sbjct: 530 YRIDCGKDVLYALDDKQREEIVSTFKGKKGKPKINTQRFKGLGEMNPSQLRETV-MDPAT 588

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +        +      +  +   + +         K
Sbjct: 589 RQLVQLSISSSDNANSMMDLLLSKKNAPARKEWLEK 624



 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 13/103 (12%)

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG---ISMQRYKGLGEMNASQLWE 752
           RI+     + +L     +  ++            G+KG   I+ QR+KGLGEMN SQL E
Sbjct: 531 RIDCGKDVLYALDDKQREEIVSTFK---------GKKGKPKINTQRFKGLGEMNPSQLRE 581

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP-RREFIQE 794
           T ++P TR L+++ I+ +  A+ +   L+  +  P R+E++++
Sbjct: 582 TVMDPATRQLVQLSISSSDNANSMMDLLLSKKNAPARKEWLEK 624


>gi|119503630|ref|ZP_01625713.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
           HTCC2080]
 gi|119460692|gb|EAW41784.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
           HTCC2080]
          Length = 629

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/640 (35%), Positives = 335/640 (52%), Gaps = 20/640 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y+AD+I++L GL+ V+KRP MY   TD     +H+  EV+DN++DE+L G+AD + V 
Sbjct: 2   SQYNADAIEVLTGLEPVRKRPGMY---TDTLRP-NHLAQEVIDNSVDEALAGHADQVDVV 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+  G  ++ DNGRG+P DLH  + +   EVI++ LHAGGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 58  LHSTGGISIQDNGRGMPVDLHPVQKLPGVEVILSTLHAGGKFSDKNYQFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L + IKR+GNIY M+F  G     L V G+    +TGT++ F P    F   +
Sbjct: 118 VNALSKRLDITIKRDGNIYTMAFEGGEKVEDLAVAGTCGKRNTGTQIRFDPDPQYFDSPN 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L H LR  + L   ++++L+D++  E  E             + +D    P    
Sbjct: 178 FSMPRLIHVLRAKAVLCPGLRVTLLDEKKNERSEWFYEDGISDYLMDATIDYPVIPEKPF 237

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                G  +  ++D A++W  +G       + N IP   GGTH++GLRS L   +  + E
Sbjct: 238 TYHFSGETE--AVDWAIQWLPEGGDVVAESYVNLIPTAQGGTHVNGLRSGLLEALREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS K+ DP+FS QTKE+L S E    V     D  S
Sbjct: 296 LRSLLPRG-VKLTAEDIWDRCCFVLSSKLQDPQFSGQTKERLSSREAAGFVSGVAKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  EA+++ +  ++ +  R  + +      RK V    +LPGKLADC+  DP   
Sbjct: 355 LWLNQHTAEAELLAELCINRAQARLRSAKK---VVRKKVTSGPALPGKLADCTSEDPAYG 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R+RE QAILPLRGKILN       ++L+S E+  +  ++  GI
Sbjct: 412 ELFLVEGDSAGGSAKQARNREFQAILPLRGKILNTWEVDAQEILASAEVYNI--SVALGI 469

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
              S D++ LRYHK+ I+ DAD DG HI TL+   F R    L+  G +Y+  PPLY I 
Sbjct: 470 DPASDDLSGLRYHKVCILADADSDGLHIATLICALFLRHFQPLVRAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  D+      L   +   +       +           +      +  +    
Sbjct: 530 VGKEVYYALDDAERNGILERLAAENKRAKPNVQRFKGLGEMNPGQLR-----ETTMDPDT 584

Query: 606 PNHDKTFIEQAVI-SGVFNCESDQEINVSLASKLANRLNF 644
               +  ++      G F+    ++ +    + L ++ + 
Sbjct: 585 RRLVQLVLDADADTHGTFDMLLAKKRSGDRKTWLESKGDL 624



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 14/81 (17%)

Query: 722 LLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD--DLFS 778
           +L+ + +  ++   ++QR+KGLGEMN  QL ETT++PDTR L+++ +   + AD    F 
Sbjct: 546 ILERLAAENKRAKPNVQRFKGLGEMNPGQLRETTMDPDTRRLVQLVLD--ADADTHGTFD 603

Query: 779 RLM-----GDEVEPRREFIQE 794
            L+     GD    R+ +++ 
Sbjct: 604 MLLAKKRSGD----RKTWLES 620


>gi|120600194|ref|YP_964768.1| DNA topoisomerase IV subunit B [Shewanella sp. W3-18-1]
 gi|146291878|ref|YP_001182302.1| DNA topoisomerase IV subunit B [Shewanella putrefaciens CN-32]
 gi|120560287|gb|ABM26214.1| DNA topoisomerase IV subunit B [Shewanella sp. W3-18-1]
 gi|145563568|gb|ABP74503.1| DNA topoisomerase IV subunit B [Shewanella putrefaciens CN-32]
 gi|319425113|gb|ADV53187.1| DNA topoisomerase IV, B subunit [Shewanella putrefaciens 200]
          Length = 628

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/633 (35%), Positives = 331/633 (52%), Gaps = 15/633 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L++D S  V+D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHLDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y+++F +G     L VTG+ G  +TGT V F P +  F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFEHGFKVEELKVTGTCGRRNTGTRVHFWPDASYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + LR  + L   ++I   +K++ E  E     + G+  ++         L +
Sbjct: 178 NFSNSKLIYLLRAKAVLCPGLRIKFTNKQTNEVHEWFY--ESGLTDYLKAAVGDNVMLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P          + D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFVGSFKGKIEAADWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +    +LS+KM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 296 EFRN-LIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQCSAFVSGIVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +   A+ + +  ++ +       +A     RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNSNTELAESLAELCINNAQ---RRLKAAKKVARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              D  DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +YI  PPL+ I
Sbjct: 472 P--DCNDISELRYGKICILADADSDGLHIATLLCALFLKHYRILVEQGHVYIAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   E  L   S   +      ++           + +   +D   +  
Sbjct: 530 DIGKDVYYALDEAEKEGILDRISAENKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                    E   +  +   +       S    
Sbjct: 589 VQLTIDDVEETDSLMDMLLAKKRSPDRKSWLED 621



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I D  + D L  
Sbjct: 545 EGILDRISAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDVEETDSLMD 604

Query: 779 RLMGDEVEP-RREFIQE 794
            L+  +  P R+ ++++
Sbjct: 605 MLLAKKRSPDRKSWLED 621


>gi|146305639|ref|YP_001186104.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina ymp]
 gi|145573840|gb|ABP83372.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina ymp]
          Length = 632

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/643 (35%), Positives = 335/643 (52%), Gaps = 15/643 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           Q ++Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I 
Sbjct: 3   QQNAYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKSIQ 58

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L+ D S  V D+GRG+P D+H EEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+
Sbjct: 59  VILHEDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGI 118

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184
           SVVNALS+ + + +KR+GN Y+MSF +G   + L V G+    +TGT V F P +  F  
Sbjct: 119 SVVNALSTRVVVTVKRDGNEYQMSFADGFKASELEVIGTVGKRNTGTSVHFWPDAKYFDS 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+   L+H L+  + L   + ++  DK + E   +   Y+ G+ +++       + L 
Sbjct: 179 FKFSVSRLKHVLKAKAVLCPGLSVTFEDKAAGEK--VEWHYEDGLRSYLVDAVSEFERLP 236

Query: 245 QSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             P     + +  ++D A +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 AEPFVGSLAGNKEAVDWALLWLPEGGDAVQESYVNLIPTAQGGTHVNGLRQGLLDAMREF 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  +D  E    VLS+KM D +FS QTKE+L S E  + V   V D 
Sbjct: 297 CEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQDAQFSGQTKERLSSREAAAFVSGVVKDA 355

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL  HP     + +  +  +       +A     RK +    +LPGKLADC+ ++P 
Sbjct: 356 FSLWLNAHPETGLALAELAISNA---GRRLKAGKKVERKKITQGPALPGKLADCAGQNPL 412

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G 
Sbjct: 413 RCELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGSEVLASQEVHDIAVAIGI 472

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
             G    D++ LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY 
Sbjct: 473 DPGSS--DLSGLRYGKICILADADSDGLHIATLLCALFVRHFRPLVDAGHVYVAMPPLYR 530

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  D+   +  L      +       ++           + +   +D   + 
Sbjct: 531 IDLGKEIFYALDDAERDGILDRLVAEKRRGKPQVTRFKGLGEMNPPQLRE-TTMDPNTRR 589

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
                   F     +  +   +       S      N    +A
Sbjct: 590 LVQLTLDDFEGTREVMDMLLAKKRAGDRKSWLETKGNLAEVLA 632



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  R+G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     ++   L
Sbjct: 549 ILDRLVAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEGTREVMDML 608

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 609 LAKKRAGD----RKSWLET 623


>gi|89075922|ref|ZP_01162297.1| DNA topoisomerase IV subunit B [Photobacterium sp. SKA34]
 gi|89048363|gb|EAR53941.1| DNA topoisomerase IV subunit B [Photobacterium sp. SKA34]
          Length = 627

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 220/586 (37%), Positives = 325/586 (55%), Gaps = 14/586 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + + SY+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTDQSYNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGHARKV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVVDDGRGMPVDIHPEEGVSGVELILCKLHAGGKFSSKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFS 183
           +SVVNALS  +++ +KR+G +Y+++F NG   + L V G+ G    GT V F P +  F 
Sbjct: 117 ISVVNALSKRVEVTVKRDGQVYQIAFENGDKVSELEVIGTCGRRAKGTRVHFWPDAKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+  L+  + L   ++I   +K + E        + G++ +++   +    L
Sbjct: 177 SAKFSVSRLKSNLKAKAVLCPGLEIVFTNKITDETIRWCY--EDGLKDYLAEGVKGYTLL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     S    + D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEEPFTGVFSAQTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+K+ DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTADDIWERCAYVLSVKIQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL E P  A+ + +  +  +       RA     RK +    +LPGKLADCS++D 
Sbjct: 354 AFSLWLNERPQLAEQLAEVCIANAH---RRMRASKKVVRKKIASGPALPGKLADCSQQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN      D++L+S+E+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILNTWEVSSDQVLASEEVHNI--SIA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY KI ++ DAD DG HI TLL   F +    L+  G ++I  PPLY
Sbjct: 469 LGIDPDSEDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFEHLVRAGHVFIAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I  GK + Y  DE      L               KG+   N L+
Sbjct: 529 RIDLGKEVYYALDEAEKNSILERLKGKRGKVNVQRFKGLGEMNPLQ 574



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 105/288 (36%), Gaps = 54/288 (18%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ +   L + L    ++        SK V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNERPQLAEQLAEVCIANAHRRMRASKKVVRKKIASGPALPGKLADCSQQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++   +  ++       LN             +++  +L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILN----------TWEVSSDQVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILS-LICN 710
                  +     ++  S    G +Y +I             +  +   ++     L+  
Sbjct: 458 ASEEVHNISIALGIDPDSEDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFEHLVRA 517

Query: 711 G----------------------DKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNA 747
           G                      D+ +       L      G++G +++QR+KGLGEMN 
Sbjct: 518 GHVFIAMPPLYRIDLGKEVYYALDEAEKNSILERLK-----GKRGKVNVQRFKGLGEMNP 572

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQE 794
            QL ETT++P+TR L+++ I D ++ +++   L+G +  E RR ++Q 
Sbjct: 573 LQLRETTMDPNTRRLVQLTIDDDNETNEMMDMLLGKKRAEDRRHWLQS 620


>gi|329893839|ref|ZP_08269910.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC3088]
 gi|328923438|gb|EGG30753.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC3088]
          Length = 629

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 220/571 (38%), Positives = 316/571 (55%), Gaps = 14/571 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A  I++L GL+ V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I V 
Sbjct: 2   SQYTAQDIEVLTGLEPVRKRPGMY---TDTARP-NHLAQEVIDNSVDEALAGFASEIDVV 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +VSDNGRG+P D+H E+G    EVI++ LHAGGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 58  VFKDGSVSVSDNGRGMPVDIHPEQGKPGVEVILSTLHAGGKFSNKNYQFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186
           VNALS  L++ IKR+  +Y M+F  G     L V  + G  +TGT V F P    F   +
Sbjct: 118 VNALSQRLEITIKRDAQVYSMAFAGGEKSRDLEVIDTCGRRNTGTTVHFWPDPQYFDSVN 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            +   L+H LR  + L   ++++       +    + +Y+ G++ ++       + L  +
Sbjct: 178 ISIPRLKHVLRAKAVLCPGLRVNF--LDDAKKESESWYYEDGLKDYLQQATDGYEVLPPT 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     S  + ++D A++W  +G       + N IP   GGTH++GLR+ L   +  + E
Sbjct: 236 PYTGSFSAQHSAVDWAVQWLPEGGELITESYVNLIPTSQGGTHVNGLRTGLLDALRDFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+K+ DP+FS QTKE+L S E  + V     D  S
Sbjct: 296 LRSLLPRG-IKLAPEDIWDRCAFVLSVKLEDPQFSGQTKERLSSREAAAFVSGVAKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +    A+ + +  ++ +       R+     RK V    +LPGKLADCS  DP + 
Sbjct: 355 LWLNQETEYAEQLAELCINNAQ---RRVRSAKKVVRKKVTSGPALPGKLADCSGEDPARG 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN       ++L+SQE+  +  ++  G+
Sbjct: 412 ELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEVDSQEILASQEVHNI--SVALGV 469

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
              S D++ LRYHK+ I+ DAD DG HI TL+   F R    LI  G +Y+  PPLY I 
Sbjct: 470 DPASDDLSGLRYHKVCILADADSDGLHIATLICALFVRHFKPLITAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
            GK + Y  D+   +  L       +     
Sbjct: 530 VGKEVYYALDDSEKQGILDRIEAENKRAKVN 560



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  ++  +++QR+KGLGEMN  QL ETT+ PDTR L+++++        +F  L
Sbjct: 546 ILDRIEAENKRAKVNVQRFKGLGEMNPLQLRETTMAPDTRRLVQLRLDHGDDTMQVFDML 605

Query: 781 MGDE-VEPRREFIQE 794
           +  +    RR++++ 
Sbjct: 606 LAKKRSSDRRQWLET 620


>gi|269103508|ref|ZP_06156205.1| topoisomerase IV subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163406|gb|EEZ41902.1| topoisomerase IV subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 627

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/586 (38%), Positives = 329/586 (56%), Gaps = 14/586 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + + SY+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTDQSYNAGAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARKV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVVDDGRGMPVDIHPEEGVSGVELILCKLHAGGKFSGKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFS 183
           +SVVNALS+ +++ +KR+G IY+++F +G   + L V G+ G    GT V F P +  F 
Sbjct: 117 ISVVNALSNRVEVTVKRDGQIYQIAFEHGNKVSELEVIGTCGRRAKGTRVHFWPDAKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L++ L+  + L   ++I   DK + E        + G++ +++   +    L
Sbjct: 177 SAKFSVSRLRNNLKAKAVLCPGLEIVFTDKVNGENYRWCY--EDGLKDYLAEGVKGFTLL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     S    + D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEEPFTGSFSGQTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL E P  A+ + +  +  +       RA     RK +    +LPGKLADCS++D 
Sbjct: 354 AFSLWLNERPQLAEQLAEVCIANAH---RRMRASKKVVRKKITSGPALPGKLADCSQQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILNTWEVSADQVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY KI ++ DAD DG HI TLL   F +   +L+  G ++I  PPLY
Sbjct: 469 LGIDPDSDDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFKALVRAGHVFIAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I  GK + Y  DE      L   S           KG+   N L+
Sbjct: 529 RIDLGKEVHYALDEAEKNVILERLSGKRGKVNVQRFKGLGEMNPLQ 574



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 104/283 (36%), Gaps = 44/283 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ +   L + L    ++        SK V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNERPQLAEQLAEVCIANAHRRMRASKKVVRKKITSGPALPGKLADCSQQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++   +  ++       LN             ++   +L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILN----------TWEVSADQVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S    G +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHDISVALGIDPDSDDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFKALVRA 517

Query: 712 DKIKITGP-----------CSLLDTIFSI-------GRKG-ISMQRYKGLGEMNASQLWE 752
             + I  P              LD            G++G +++QR+KGLGEMN  QL E
Sbjct: 518 GHVFIAMPPLYRIDLGKEVHYALDEAEKNVILERLSGKRGKVNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQE 794
           TT++P+TR L+++ I D  Q +++   L+G +  E RR ++QE
Sbjct: 578 TTMDPNTRRLVQLTIDDDEQTNEMMDMLLGKKRAEDRRHWLQE 620


>gi|312885199|ref|ZP_07744878.1| DNA topoisomerase IV subunit B [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367139|gb|EFP94712.1| DNA topoisomerase IV subunit B [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 626

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 222/583 (38%), Positives = 319/583 (54%), Gaps = 12/583 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N  Y+A  + +L+GLD V+ RP MY   T+ E   +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   NEQYNAKDLSVLEGLDPVRHRPGMY---TETERP-NHLAQEVIDNSVDEALAGHAKKIRV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H E+GIS  E+IMT+LHAGGKF+  +YK SGGLHGVG+S
Sbjct: 58  ILHEDQSLEVVDDGRGMPVDIHPEKGISGVELIMTKLHAGGKFSNDNYKFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ +KR+G ++E++F  G     L VTG+ G  +TGT V F P +  F   
Sbjct: 118 VVNALSRRVEVTVKRDGQVHEIAFEGGDAVTELSVTGTCGMRNTGTSVHFWPDAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L + LR  + L   ++I   DK + E  +                     P + 
Sbjct: 178 KFSSLRLVNNLRAKAVLCPGLEIIFSDKVNNEEHKWFYEDGLKDYLAEGVKGYEVLPDLP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                    +  +    +   +G       + N +P K GGTH++GLR  L   +  + E
Sbjct: 238 YIGSFSAESEMATW-AVIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    + GDD  +  + VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 FRNLLPRG-VKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL E P  A+ + +  +  +       RA     RK V    +LPGKL DCS +D  ++
Sbjct: 356 LWLNETPQLAEQLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDCSVQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 EIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI--SVALGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D+ D++ LRY KI I+ DAD DG HI TLL   F +   +L+  G +Y+  PPLY I 
Sbjct: 471 DPDNDDLSGLRYGKICILADADSDGLHIATLLCALFTKHFRALVEAGHIYVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 531 CGKEVFYALDDDEKEGVLERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D     ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDRESTIEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQAN 620


>gi|194339071|gb|ACF49451.1| GyrB [Amycolatopsis fastidiosa]
          Length = 465

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 214/466 (45%), Positives = 304/466 (65%), Gaps = 17/466 (3%)

Query: 27  RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86
           RP MYIG T  E GLHH+I+EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP D
Sbjct: 1   RPGMYIGST-AEPGLHHLIWEVVDNSVDEAMAGHATRVEVTLLADGGVRVDDDGRGIPVD 59

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
            H EE  SA EV+MT LHAGGKF+  SY VSGGLHGVG+SVVNALS+ L   +KR+G+++
Sbjct: 60  EHPEEKRSALEVVMTVLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRLYAEVKRQGHVW 119

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
              + +     P+   G    +TGT ++F P   IF    FN +T+  RL+E++FLN  +
Sbjct: 120 RQEYRDSEPVTPVQR-GEETEETGTSISFWPDGKIFETTTFNAETVARRLQEMAFLNKGL 178

Query: 207 QISLIDKRSPEP-------------REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            ISL D+R  +              +E T  Y GG+E FV +++  ++PL ++ I  +  
Sbjct: 179 TISLRDERVSDEEAAEDVVGQAARVKERTFHYPGGLEDFVKHINHAREPLHRNVIAFEAE 238

Query: 254 RDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
             +  I +++AM+WN GY E+V  F N I   +GGTH  G R+ALTR +  Y       K
Sbjct: 239 DKDKGIQVEVAMQWNTGYSESVHTFANTINTPEGGTHEEGFRAALTRVVNLYARDKKLLK 298

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           +   ++ GDD REG  +++S+K+ +P+F  QTK+KL +SE ++ V++  N+ L+ W E +
Sbjct: 299 EKDANLGGDDVREGLAAIVSVKLSEPQFEGQTKQKLGNSEAKTFVQATCNEWLADWFERN 358

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+IV K + ++  R AAR+AR+L RRKG LDI  LPGKL DC   +P++ EL++VE
Sbjct: 359 PTEAKLIVTKAVSSAQARMAARKARELVRRKGALDIGGLPGKLRDCRSTNPEECELYIVE 418

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           GDSAGGSAK GR    QAILP+RGKI+NVE+AR D++L + E+ +L
Sbjct: 419 GDSAGGSAKDGRDSRFQAILPIRGKIINVEKARIDRVLKNTEVQSL 464


>gi|254524349|ref|ZP_05136404.1| DNA topoisomerase IV, B subunit [Stenotrophomonas sp. SKA14]
 gi|219721940|gb|EED40465.1| DNA topoisomerase IV, B subunit [Stenotrophomonas sp. SKA14]
          Length = 629

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/565 (39%), Positives = 319/565 (56%), Gaps = 13/565 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I +
Sbjct: 2   NARYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHARSIEI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGS  VSD+GRG+P D+H EE I   E+I+TRLHAGGKF+  +Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSVEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNNNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +++ IKREG  + ++F NG    PL V GS    +TGT V F P    F   
Sbjct: 118 VVNALSTLVEVHIKREGAEHRITFRNGDRATPLEVVGSVGKKNTGTRVRFWPDPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H LR  + L   + + L D+ + E    T +Y+ G+  ++      ++ L  
Sbjct: 178 KFAVRALKHLLRAKAVLCPGLTVKLTDEATGEV--DTWYYEDGLRDYLKLELGERESLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A+ W          + N IP    GTH++GLR+ LT  +  + +
Sbjct: 236 DLFVGNLKKDTEVVDWAVAWLPEGELVQESYVNLIPTAQHGTHVNGLRTGLTEALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  + VLS+KM DP+FS QTKE+L S +    VE   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
             L ++    + I +  ++ +  R        L  RK V    +LPGKLADC  +D  ++
Sbjct: 355 LLLNQNVELGEKIAQIAIERASARLKTE---KLVVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAI+PLRGKILN      + +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVSSNSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI+ LRY K+II+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ I 
Sbjct: 472 GKD--DISGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDAGHVFVAMPPLFRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSE 570
            GK + Y  DEE     L      +
Sbjct: 530 VGKQVFYALDEEEKRSMLDKIEREK 554



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            S+LD I     KG I++ R+KGLGEMN  QL E+T++PDTR L+++ + D  Q   L  
Sbjct: 544 RSMLDKIEREKIKGAINVTRFKGLGEMNPPQLRESTIHPDTRRLVQLTVDDGEQTRSLMD 603

Query: 779 RL 780
            L
Sbjct: 604 ML 605


>gi|53805052|ref|YP_113319.1| DNA topoisomerase IV subunit B [Methylococcus capsulatus str. Bath]
 gi|53758813|gb|AAU93104.1| DNA topoisomerase IV, B subunit [Methylococcus capsulatus str.
           Bath]
          Length = 628

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/556 (40%), Positives = 317/556 (57%), Gaps = 14/556 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N  YDA +I++L GLD V++RP MY   TD      H+  EV+DNA+DE+L G+A +I +
Sbjct: 2   NEVYDASAIEVLSGLDPVRRRPGMY---TDTTRP-DHLAQEVIDNAVDEALAGFARLIEI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DG   V D+GRG+P D+H E G+S  EVI+TRLHAGGKF++K+Y+ SGGLHGVGVS
Sbjct: 58  RLLADGGLEVRDDGRGMPVDIHPELGVSGVEVILTRLHAGGKFSRKAYRYSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQ 185
           VVNALS  L++ ++R+G ++ ++F  G     L  TG+     TGT V F P +  F   
Sbjct: 118 VVNALSLRLEVEVRRDGKVHAIAFEKGEKVGDLTETGTTPRRATGTTVRFWPEAHYFDNA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L   ++I + D  S E    T  Y+ G+  ++    +    +  
Sbjct: 178 RFSRSRLKHLLRAKAVLCPGLEIRMTDDASGET--ETWCYRNGLPQYLLDQLQGCACIPD 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P          +++ A +   +G       + N +P   GGTH++GLR+ LT  +  + 
Sbjct: 236 EPFTGAMEGRQEAVEWAVLWCPEGAAPVAESYVNLVPTVQGGTHVNGLRTGLTEAVREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    ++ DD  E    VLS+KM +P+F+ QTKE+L S E  S V   V D  
Sbjct: 296 EYRNLLPRG-IKIVPDDVWERCNHVLSVKMQEPQFAGQTKERLNSRECASFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +HP   + I + V++++       RA     RK V    +LPGKLADC+ +D  +
Sbjct: 355 SLWLNQHPAVGERIAELVIESAQ---KRLRAARRVTRKKVSSGPALPGKLADCAAQDVNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R ++ QAI+PLRGKILN        +L+SQE+  +  A+G  
Sbjct: 412 TELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVESGAILASQEVHDISLAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G    D++ LRY KI ++ DAD DG HI TLL   F R   +L+  G ++I  PPLY I
Sbjct: 472 PGAT--DLSGLRYGKICVLADADSDGNHIATLLCALFLRHFRALVKAGHVFIAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLE 560
             GK + Y  DE   +
Sbjct: 530 DVGKQVYYALDEAEKK 545



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 14/91 (15%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +   KG +++ R+KGLGEMN  QL ETT+NPDTR L+++ + DA+  D+   
Sbjct: 545 KGVLDRIEAEKIKGKVNVLRFKGLGEMNPVQLRETTMNPDTRRLVQLSLDDAAATDERLD 604

Query: 779 RLM-----GDEVEPRREFIQENSLPSAL-DI 803
            L+     GD    RR +++E      L DI
Sbjct: 605 MLLAKRRAGD----RRVWLEE---KGNLADI 628


>gi|238897993|ref|YP_002923673.1| DNA topoisomerase IV, subunit B [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465751|gb|ACQ67525.1| DNA topoisomerase IV, subunit B [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 632

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/636 (35%), Positives = 329/636 (51%), Gaps = 15/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+A SI++L GL+ V++RP MY   T+     +H+  EV+DN++DE+LEG A  I
Sbjct: 1   MTMNHYNASSIEVLTGLEPVRRRPGMY---TETTRP-NHLAQEVIDNSVDEALEGKARRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT+  D S  VSDNGRG+P DLH EE + A E+I++RLHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVTVYPDHSLKVSDNGRGMPVDLHPEEQVPAIELILSRLHAGGKFSNKNYHFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFS 183
           +SVVNALS  L++ +KR G IY ++F  G     L + G+     TGT V F P +  F 
Sbjct: 117 LSVVNALSLRLEVTVKRGGQIYRIAFEKGNKTEDLEIIGTCAQRDTGTCVHFWPDASFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L  S+QI   ++ +   +              +       P 
Sbjct: 177 TPHFSISRLSHLLKAKAVLCPSLQIVFKNELNNTEQRWCYEDGLKHYLIETLGASVTLPK 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                        +   L      G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 FPFLGSFSEETKAVDWALCWLPEGGGELLTESYVNLIPTTQGGTHVNGLRQGLLDALREF 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    + G+D   G   +LS+KM DP+FS QTKE+  S +  + V + V D 
Sbjct: 297 CEFRQHLPRG-VKLSGEDVWVGCAYLLSVKMQDPQFSGQTKERFSSRQCATFVSTVVKDA 355

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  EA+ + + V++ +       RA     RK +    +LPGKLADCS +D +
Sbjct: 356 FSLWLNQNLSEAEQLAEMVINNAQ---QRLRAAKKVVRKKLTSGPALPGKLADCSSQDVQ 412

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R R+ QA++PL+GKILN      D++L+S+E+  +  A+G 
Sbjct: 413 QTELFLVEGDSAGGSAKQARDRQYQAVMPLKGKILNTWEVSSDEVLASKEVHDISVAIGM 472

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
               +  D++ LRY KI I+ DAD DG HI TLL   FFR   SL+  G +Y+  PPLY 
Sbjct: 473 DPESE--DLSALRYGKICILADADSDGLHIATLLCALFFRHFRSLVQAGHIYVAMPPLYR 530

Query: 544 ITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           I  GK + Y  DEE  +  L  + Q             G ++   LR    D      + 
Sbjct: 531 IDLGKEVFYALDEEEKKRILGDLKQKRGTPNVQRFKGLGEMNPVQLRETTLDPNTRRLVQ 590

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                N     +  A+I  +   +  ++    L  K
Sbjct: 591 LRVQDNEMDHTV--AIIDMLLAKKRSEDRRHWLQEK 624



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 15/104 (14%)

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI-SMQRYKGLGEMNASQLWETT 754
           RI+       +L     K  +              ++G  ++QR+KGLGEMN  QL ETT
Sbjct: 530 RIDLGKEVFYALDEEEKKRILGDLKQ---------KRGTPNVQRFKGLGEMNPVQLRETT 580

Query: 755 LNPDTRSLLRVKITDASQADD---LFSRLMGDE-VEPRREFIQE 794
           L+P+TR L+++++ D ++ D    +   L+  +  E RR ++QE
Sbjct: 581 LDPNTRRLVQLRVQD-NEMDHTVAIIDMLLAKKRSEDRRHWLQE 623


>gi|237729956|ref|ZP_04560437.1| DNA topoisomerase IV subunit B [Citrobacter sp. 30_2]
 gi|226908562|gb|EEH94480.1| DNA topoisomerase IV subunit B [Citrobacter sp. 30_2]
          Length = 630

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/645 (33%), Positives = 332/645 (51%), Gaps = 20/645 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGDKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLSEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFSGETETVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQSAELLAEMAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y   EE     L       E       K  + +      ++     +  +    
Sbjct: 531 LGKEVYYALTEEEKAGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
               +  I+        N   D  +    +    N L    + ++
Sbjct: 584 RRLVQLIIDDEDDQRT-NAMMDMLLAKKRSEDRRNWLQEKGDLAD 627



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 98/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQSAELLAEMAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKH 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      + +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLIIDDEDDQRTNAMMDMLLAKKRSEDRRNWLQE 621


>gi|192360165|ref|YP_001983359.1| DNA topoisomerase IV subunit B [Cellvibrio japonicus Ueda107]
 gi|190686330|gb|ACE84008.1| DNA topoisomerase IV, B subunit [Cellvibrio japonicus Ueda107]
          Length = 629

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/566 (39%), Positives = 319/566 (56%), Gaps = 14/566 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A+ I++L GLD VKKRP MY   T+     +H+  E++DN++DE+L G+A  I V 
Sbjct: 2   ANYSAEDIEVLTGLDPVKKRPGMY---TETTRP-NHLAQEIIDNSVDEALAGHAKSIEVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S TV+D+GRG+P D+H E+G    EVI+  LHAGGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 58  LHKDNSVTVADDGRGMPVDIHPEQGKPGVEVILCTLHAGGKFSNKNYQFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186
           VNALS  L++ IKR+GN+Y M F NG     L +  +     TGT V FLP+   F    
Sbjct: 118 VNALSEQLEVTIKRDGNVYRMGFANGDKATDLDIIDTCPKRQTGTSVRFLPNPVYFDSPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   ++H LR  + L   + +S +D+ + E      +Y+ G++ +++   +    L + 
Sbjct: 178 FSVTRMRHVLRAKAVLCPGLTVSFLDEATGEK--DVWYYEDGLKDYLAGATQEWISLPEQ 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P       +  +I  A++W  +G       + N IP   GGTH++GLR+ L   +  Y E
Sbjct: 236 PFVGDFKAETEAISWAVQWLPEGGELVQESYVNLIPTAQGGTHVNGLRTGLMDAMRDYCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                      +  +D       VLS K  DP+FS QTKE+L S E  + V     D  +
Sbjct: 296 FRN-LIPRGIKLAPEDLWNNCCFVLSYKHYDPQFSGQTKERLTSREAAAFVSGIAKDAFA 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  E   + +  +  +  R  + +      RK V    +LPGKLADCS  D  +S
Sbjct: 355 LWLNQHTEEGDKLAEFCISNAQKRVRSGKK---VARKKVTQGPALPGKLADCSSGDTSRS 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSAEILASQEVHDISVAIGMDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G +  D+++LRY+KI I+ DAD DG HI TLL   F +  P L+ NG +++  PPLY I 
Sbjct: 472 GSE--DLSELRYNKICILADADSDGLHIATLLCALFVKHFPVLVRNGHVFVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE 571
            GK + Y  DE      L   +   +
Sbjct: 530 IGKDVYYALDESEKNGILNRIAAENK 555



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           +L+ I +  ++G +++QR+KGLGEMN  QL ETT+ PDTR L+++ I D      +   
Sbjct: 546 ILNRIAAENKRGKVNVQRFKGLGEMNPLQLRETTMAPDTRRLVQLTIEDVDGTLQIMDM 604


>gi|27364066|ref|NP_759594.1| DNA topoisomerase IV subunit B [Vibrio vulnificus CMCP6]
 gi|37678772|ref|NP_933381.1| DNA topoisomerase IV subunit B [Vibrio vulnificus YJ016]
 gi|320157449|ref|YP_004189828.1| topoisomerase IV subunit B [Vibrio vulnificus MO6-24/O]
 gi|27360184|gb|AAO09121.1| DNA topoisomerase IV, B subunit [Vibrio vulnificus CMCP6]
 gi|37197513|dbj|BAC93352.1| topoisomerase IV, subunit B [Vibrio vulnificus YJ016]
 gi|319932761|gb|ADV87625.1| topoisomerase IV subunit B [Vibrio vulnificus MO6-24/O]
          Length = 626

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 214/591 (36%), Positives = 323/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDT 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+  D+ + +  +       K  +   V    
Sbjct: 172 KYFDSPNFSVTRLVNNLRAKAVLCPGLEITFSDRVNGKEHQWLYQDGLKDYLIEGVKGYT 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         +    + ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 LLPEEPFTGQFSAETEAADWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + G+D  +  + VLS+KM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGEDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK +    +LPGKL DC
Sbjct: 348 GVVKDTFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKIASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLARTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS ++  LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLEGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D+   +  L   S           KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDAEKDGVLERLSQKRAKINVQRFKGLGEMNPLQ 573



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRR 789
           R  I++QR+KGLGEMN  QL ETT++P+TR L+++ I D+    ++   L+G +  + RR
Sbjct: 555 RAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSDATMEMMDMLLGKKRADDRR 614

Query: 790 EFIQEN 795
            ++Q N
Sbjct: 615 SWLQNN 620


>gi|301325620|ref|ZP_07219086.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 78-1]
 gi|300847592|gb|EFK75352.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 78-1]
          Length = 630

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 219/647 (33%), Positives = 333/647 (51%), Gaps = 20/647 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFSGDTEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  +
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFT 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y   EE  E  L       E       K  + +      ++     +  +    
Sbjct: 531 LGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +  I+        +   D  +    +    N L    + +E  
Sbjct: 584 RRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 99/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFTLWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKH 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|238918166|ref|YP_002931680.1| DNA topoisomerase IV subunit B [Edwardsiella ictaluri 93-146]
 gi|238867734|gb|ACR67445.1| DNA topoisomerase IV, B subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 631

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 236/648 (36%), Positives = 344/648 (53%), Gaps = 22/648 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHPDQSLEVIDNGRGMPVDIHPEEGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G IY+M+F NG     L V+G+ G  +TGT V F P +  F 
Sbjct: 117 ISVVNALSRRVEVSVRRDGQIYQMAFENGEKVEDLHVSGTVGRRNTGTSVHFWPDAQFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D  +   +      + G+  ++         L
Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEILFRDLVNGSEQRWCY--QDGLTDYLMESVNGLVTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEQPFTGTFASDTEAVDWALLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+++ +  ++++       RA     RK +    +LPGKLADCS +D 
Sbjct: 354 AFSLWLNQNVQSAELLAELAINSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCSAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY
Sbjct: 469 IGIDPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRPLVQAGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y   EE     L      +        KG+   N L+         +  + 
Sbjct: 529 RIDLGKEVFYALSEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLR-------ETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  +  IE   +        D  +    A    N L      +E
Sbjct: 582 PNTRRLVQLAIEDEDMERTVAV-MDMLLAKKRAEDRRNWLQENGNLAE 628



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 4/77 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VE 786
           +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I   D  +   +   L+  +  E
Sbjct: 555 KKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLAIEDEDMERTVAVMDMLLAKKRAE 614

Query: 787 PRREFIQENSLPSALDI 803
            RR ++QEN   + LD+
Sbjct: 615 DRRNWLQENGNLAELDV 631


>gi|283836435|ref|ZP_06356176.1| DNA topoisomerase IV, B subunit [Citrobacter youngae ATCC 29220]
 gi|291067809|gb|EFE05918.1| DNA topoisomerase IV, B subunit [Citrobacter youngae ATCC 29220]
          Length = 630

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/641 (33%), Positives = 332/641 (51%), Gaps = 17/641 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGDKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLSEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFSGETETVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQSAELLAEMAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y   EE     L      +        KG+   N ++        +D   +   
Sbjct: 531 LGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ---LRETTLDPNTRRLV 587

Query: 606 PNHDKTFIEQA--VISGVFNCESDQEINVSLASKLANRLNF 644
                   +Q    +  +   +   E   +   +  +  + 
Sbjct: 588 QLIIDDEDDQRTNAVMDMLLAKKRSEDRRNWLQEKGDLADL 628



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 98/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQSAELLAEMAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKH 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      + +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLIIDDEDDQRTNAVMDMLLAKKRSEDRRNWLQE 621


>gi|323144110|ref|ZP_08078750.1| DNA topoisomerase IV, B subunit [Succinatimonas hippei YIT 12066]
 gi|322416125|gb|EFY06819.1| DNA topoisomerase IV, B subunit [Succinatimonas hippei YIT 12066]
          Length = 638

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/653 (34%), Positives = 342/653 (52%), Gaps = 21/653 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    N  Y   SI++L+GL+ V++RP MY   TD ++  +H+  EV+DN++DE+L G+
Sbjct: 1   MTKEQIN-EYTGASIEVLEGLEPVRRRPGMY---TDTQNP-NHLGMEVIDNSVDEALAGF 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L  DGS  V DNGRG+P D+H  E I A E+I +RLHAGGKF+  +Y  SGGL
Sbjct: 56  ATKIEVNLYKDGSLEVIDNGRGMPVDMHPTEKIPAIELIFSRLHAGGKFSNDNYAFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVGVSVVNALS  L+ ++ R+G +Y + +  G     L V G+     TGT + F P  
Sbjct: 116 HGVGVSVVNALSKRLEAKVSRDGQVYSIVYSGGEKIEDLKVIGTCPKSRTGTAIRFWPDE 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    FN   L H LR  + L   + +   D+ S +       ++G + +++    + 
Sbjct: 176 KYFDGIAFNVKALTHLLRAKAVLCKGLSVVFKDENSGKE--EEWHHEGSLSSYLLTQMQD 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC--FTNNIPQKDGGTHLSGLRSALT 297
            + +   P     S+    ++ A+ WN    + +L   F N IP  +GGTH++G RS L 
Sbjct: 234 AEIVPDPPFDGSFSQPESEVEWAVTWNVDSADKLLHESFVNLIPTPEGGTHVNGFRSGLL 293

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + +      ++   ++ DD     + VL++K+ DP+F+ QTKEKL S +  S+VE
Sbjct: 294 IALREFCDLHALLPRN-LKLVADDVWAHCSFVLAVKIQDPQFAGQTKEKLSSRQCASLVE 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  + +   H    K + K +++++  R++   A  +  RK  +    LPGKL DC
Sbjct: 353 GIVKDAAALYFNSHTEIGKAVAKLIIESAKRRES---AAKVVERKKSVRGPQLPGKLVDC 409

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           +  DP + ELF+VEGDSAGGSA+Q R    QAILPLRGKILN      +  L+S+EI  +
Sbjct: 410 TSTDPSRGELFIVEGDSAGGSARQARDSSYQAILPLRGKILNTWEVSANTALASEEIRAI 469

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             A+G     DS D+  LRY KI I+ DAD DG HI TLL   F +  P+L+  G +Y+ 
Sbjct: 470 SVAMGLDP--DSDDLTNLRYDKICILADADSDGLHIGTLLCALFVKHFPALVRAGHVYVA 527

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
            PPLY +  GK  +Y  D+   E+  + Q    +  +  ++  +     L     + L+ 
Sbjct: 528 CPPLYRLDCGKIKEYALDD---EELALKQKQFLKRGIKAENIKIQRFKGLGEMNPEQLR- 583

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           +  +        +  +E     G      D  ++   A+     L    +K+E
Sbjct: 584 ETTLSPDSRRLMQLTLEDLGD-GPVYALMDMLLSKKRAADRRQWLEKNGDKAE 635



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 12/81 (14%)

Query: 731 RKGIS-----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA----SQADDLFSRLM 781
           ++GI      +QR+KGLGEMN  QL ETTL+PD+R L+++ + D       A  L   L+
Sbjct: 558 KRGIKAENIKIQRFKGLGEMNPEQLRETTLSPDSRRLMQLTLEDLGDGPVYA--LMDMLL 615

Query: 782 GDE-VEPRREFIQENSLPSAL 801
             +    RR+++++N   + L
Sbjct: 616 SKKRAADRRQWLEKNGDKAEL 636


>gi|157825436|ref|YP_001493156.1| DNA topoisomerase IV subunit B [Rickettsia akari str. Hartford]
 gi|157799394|gb|ABV74648.1| DNA topoisomerase IV subunit B [Rickettsia akari str. Hartford]
          Length = 662

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/656 (33%), Positives = 350/656 (53%), Gaps = 15/656 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + +++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE+L G+A 
Sbjct: 13  NKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDS-NAMHHLVSEVLDNAMDEALAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           IIT+ ++ D S T+ DNGRGIP D H +    SA EVI+T LH+GGKF+   Y  +GGLH
Sbjct: 72  IITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L++++ ++G +Y  S+  G     L+   S     GT + F P  +I
Sbjct: 132 GVGISVVNALSKHLEIKVYKQGKLYSQSYSQGKKLTDLICEESYKRLRGTSINFTPDPEI 191

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---PEPREITMFYKGGIEAFVSYLD 237
           F     FN   +    R  ++L   V I    +       P++  + +  G++ ++S   
Sbjct: 192 FSEKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVLSDIPKKALINFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRS 294
                ++              I ++ A+ W +  +   +  + N +    GGTH  GL+S
Sbjct: 252 TLDNLIIPEIFSGNVESTPDGIKLEWAICWQNNDNSAFIQSYCNTVTTPQGGTHEQGLKS 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ R + +Y E     K    ++  +D  E    VLSI + +P F  QTKEKLVS+ V  
Sbjct: 312 AILRGLKAYGEMIGNKKAA--NLTIEDILETACVVLSIFIAEPSFQGQTKEKLVSNGVSK 369

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ + D    +L      A  +++ V+  +  R + +  ++   RK       LPGKL
Sbjct: 370 PVENIIKDHFDHFLSSDKALATNLLEHVIAIAEFRISKKNEKN-ISRKNATQKLRLPGKL 428

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 429 ADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAI 488

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G L
Sbjct: 489 QDLEIALACGSLKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHL 547

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ KPPLY +T+     Y  DEE     +   S + + ++       +    +   + + 
Sbjct: 548 YLAKPPLYRLTQSNKTYYAGDEEEKAKLMGKLSKASKAKIEVGRFKGL-GEMMPAQLKE- 605

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +    +       + F     I      +  ++    +  +   +++ I  + +
Sbjct: 606 TTMHPEKRSLLNVTLEDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K++       + ++      V    +      F F    K +    +      +  L  +
Sbjct: 501 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQS 560

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L+  +    +  I + R+KGLGEM  +QL ETT++P+ RSLL V +
Sbjct: 561 NKTYYAGDEEEKAKLMGKLSKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLNVTL 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            D    D +   LMG + E R +FI E +L       + LDI
Sbjct: 621 EDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELDI 662


>gi|254497819|ref|ZP_05110586.1| DNA topoisomerase IV subunit B [Legionella drancourtii LLAP12]
 gi|254352950|gb|EET11718.1| DNA topoisomerase IV subunit B [Legionella drancourtii LLAP12]
          Length = 629

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 230/575 (40%), Positives = 330/575 (57%), Gaps = 19/575 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     Y A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE L G+
Sbjct: 3   MSEN-----YTAQAIEVLSGLEPVQRRPGMY---TDTTRP-NHLAQEVIDNSVDEVLAGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  ITVTL+ DGS  V D+GRG+P DLH + G+S  EVIMTRLHAGGKF+ K+Y  SGGL
Sbjct: 54  ATHITVTLHEDGSVEVEDDGRGMPVDLHPQLGLSGVEVIMTRLHAGGKFSDKNYSFSGGL 113

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS  L++ IKR G +Y+MSF NG     L   G     DTGT + F P++
Sbjct: 114 HGVGVSVVNALSDRLEVTIKRNGIVYQMSFANGDKTCELNEIGITKKRDTGTTIRFWPNA 173

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F     +   L H LR  + L + + ++ I+K + E       +  G+  +++     
Sbjct: 174 KYFDTTRISIKHLTHILRAKAVLCTGLSMTFINKTNNEESHWCYEH--GLVDYMNQSLGD 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P   +   D+ ++D A+ W++G        + N IP   GGTH++G RS L  
Sbjct: 232 GDYLPEEPFAGEFKSDDATVDWALVWSNGASAGFSESYVNLIPTIQGGTHVNGFRSGLFE 291

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  DD  E    VLSIKM +P+F+ QTKE+L S ++ +VV +
Sbjct: 292 AMNEFCELRNLLPRG-VKLAADDLWEPCQYVLSIKMKEPQFAGQTKERLSSRQISAVVSN 350

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  + WL +H  + + I    ++    +   ++A+    RK V    +LPGKLADC 
Sbjct: 351 VVKDAFALWLNQHRNQGEAIASLAIE--RAQRRLKQAKQ-VARKRVSQGPALPGKLADCL 407

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           + D  ++ELFLVEGDSAGGSAKQ R+++ QAILPLRGKILN       ++L+SQEI  + 
Sbjct: 408 QTDLSQAELFLVEGDSAGGSAKQARNKDFQAILPLRGKILNSWEVDSSQVLASQEIHDIS 467

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+  LRY K+ I+ DAD DGAHI TL+   F R    L+  G +++  
Sbjct: 468 VAIGVDPGSI--DLTGLRYGKVCILADADSDGAHIATLICALFLRHFKPLVQAGHVFVAM 525

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           PPLY I  GK + Y  D+E     L + + + + +
Sbjct: 526 PPLYRIDAGKIVHYALDDEEKNRLLSHLAQTSKAK 560



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 11/79 (13%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           LL  +    +   ++QR+KGLGEMN  QL ETT++P+TR L+++ + D   A+ +    M
Sbjct: 549 LLSHLAQTSKAKANVQRFKGLGEMNPIQLRETTMDPNTRRLVQLTLEDEEGAEAIMDM-M 607

Query: 782 ------GDEVEPRREFIQE 794
                 GD    R+ +++ 
Sbjct: 608 LNKKRAGD----RKIWLET 622


>gi|160871833|ref|ZP_02061965.1| DNA topoisomerase IV, B subunit [Rickettsiella grylli]
 gi|159120632|gb|EDP45970.1| DNA topoisomerase IV, B subunit [Rickettsiella grylli]
          Length = 630

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/573 (39%), Positives = 326/573 (56%), Gaps = 16/573 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ +     Y A++I++L GLD VK+RP MY  DT   +   H+  EV+DN++DE++ GY
Sbjct: 1   MTKSSPKK-YTAEAIEVLSGLDPVKRRPGMY-SDTSRPN---HLAQEVIDNSVDEAIAGY 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L++D S  VSD+GRG+P D+H EE ++  E+I+TRLHAGGKFN K+Y+ SGGL
Sbjct: 56  ARHIDVVLHVDNSLEVSDDGRGMPVDVHPEEKVTGVELILTRLHAGGKFNHKNYRFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVGVSVVNALS  L++ I+R+G IY+M F  G   + L   G     T GT + F P  
Sbjct: 116 HGVGVSVVNALSHRLQVTIRRDGFIYQMQFEQGNKKSNLKKIGKMETATSGTSLRFWPDK 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F  + F+   L+H LR  + L   + +   DK++ +      FY  G+ +++    R 
Sbjct: 176 RYFDNEKFSVSRLKHSLRAKAVLCPGLTVRFTDKQANKK--DKWFYVDGVLSYLKDSLRQ 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + + + P     + +   +D A+ W  +     +  + N +P   GGTH++GLR+ L  
Sbjct: 234 VERIPKEPFHGHFATEIEEVDWALCWLLESGDGLMESYVNLVPTVQGGTHVNGLRTGLLE 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  EG   +LS+K+ +P+FS QTKE+L S +    V  
Sbjct: 294 AMREFCELRDLLPRG-LKLAPEDVWEGCHYILSVKLLEPQFSGQTKERLTSRQSALFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D  S WL +H  EA+ + + ++  +  R  ++       RK VL  A LPGKLADC+
Sbjct: 353 VIKDAFSLWLNQHVAEAENLAELMIAHAQKRQRSKH----VARKKVLGGAVLPGKLADCT 408

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E D  ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN      + +L SQEI  + 
Sbjct: 409 ETDLNRTELFLVEGDSAGGSAKQARDRAFQAIMPLRGKILNTWEVTSNHVLGSQEIHDIA 468

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D++ LRY KI I+ DAD DG HI TLL   F +   +LI  G +YI  
Sbjct: 469 VAIGIDPGSK--DLSGLRYGKICILADADSDGLHIATLLCGLFLKHFSALIEAGHIYIAM 526

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           PPLY I RGK + Y  D+E  +  L       +
Sbjct: 527 PPLYRIDRGKEVFYALDDEEKQIILDRLIAENK 559



 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 9/80 (11%)

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
              +    + ++ +I     +LD + +  +  IS+QR+KGLGEMN  QL ETT+ PDTR 
Sbjct: 535 GKEVFYALDDEEKQI-----ILDRLIAENKGKISIQRFKGLGEMNPMQLRETTMAPDTRR 589

Query: 762 LLRVKITDASQADDLFSRLM 781
           L+++ I    +    FS LM
Sbjct: 590 LVQLIIDHPQKT---FS-LM 605


>gi|15837887|ref|NP_298575.1| DNA topoisomerase IV subunit B [Xylella fastidiosa 9a5c]
 gi|9106275|gb|AAF84095.1|AE003962_5 topoisomerase IV subunit B [Xylella fastidiosa 9a5c]
          Length = 629

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/588 (38%), Positives = 324/588 (55%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           NS Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L GYA+ I V
Sbjct: 2   NSRYNAADIEVLTGLDPVKRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGYANRIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC V+DNGRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVADNGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS + L IKREG+ + M F  G   + L V G+ +  +TGT + F P S  F   
Sbjct: 118 VVNALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L+++ + E        K G+  ++       + L  
Sbjct: 178 KFNVRVLRHLLRAKAVLCPGLTVELLEEATGEINTWHF--KDGLRDYLKGEMTESELLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A+ W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 ELFIGCLKKDTEVVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E  V+D  S
Sbjct: 296 FRNLLPRG-IKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIEGTVHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++    + I +  ++ +  R           RK +    +LPGKLADC   D  ++
Sbjct: 355 LWLNQNVDIGEQIAQIAIERASARLKTE---KQVTRKKITHGPALPGKLADCISLDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGNVLASDEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  +++ LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--NLSGLRYGKVVILADADSDGLHIATLLTALFLKHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  D+E      E     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDDEEKTMLLEKIKREKIKGQVSVTRFKGLGEMNPQQLRE 577



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LL+ I     KG +S+ R+KGLGEMN  QL E+T++PDTR L+++ + D +Q   L   L
Sbjct: 546 LLEKIKREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTMDDNTQTCSLMDML 605

Query: 781 MGDE-VEPRREFIQENSLPSALDI 803
           +  +    R+++++     ++LDI
Sbjct: 606 LAKKRASDRKQWLETKGNLASLDI 629


>gi|320176204|gb|EFW51268.1| Topoisomerase IV subunit B [Shigella dysenteriae CDC 74-1112]
          Length = 630

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLMQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLMQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|261856340|ref|YP_003263623.1| DNA topoisomerase IV subunit beta [Halothiobacillus neapolitanus
           c2]
 gi|261836809|gb|ACX96576.1| DNA topoisomerase IV, B subunit [Halothiobacillus neapolitanus c2]
          Length = 638

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/575 (39%), Positives = 324/575 (56%), Gaps = 15/575 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D+     YDA +I++L GL+ V+KRP MY   TD     +H+  EV+DN++DE++ G+
Sbjct: 1   MADSTNTQQYDARAIEVLTGLEPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEAVSGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ DGS +V+D+GRG+P D+H E G++  E+I+TRLHAGGKF+ K+Y+ SGGL
Sbjct: 57  ASRIDVVLHADGSLSVTDDGRGMPVDIHPEHGVTGVELILTRLHAGGKFSDKTYRFSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179
           HGVGVSVVNALS  L + I+R+G I++M+F +G     L   G+     TGT + F P +
Sbjct: 117 HGVGVSVVNALSEKLTVEIRRDGKIWQMAFADGAPVGELAEAGTVPKKQTGTRLHFWPRA 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE---AFVSYL 236
             F    F    L H LR  + L   + ++ ID+ S EP++I  F  G  +     +   
Sbjct: 177 SYFDQPKFLVSRLLHVLRAKAVLCPGLTVTFIDESSDEPQKIWHFENGLCDYLLGALEGR 236

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                      +  + +     +D A+ W  +G       + N IP   GGTH++GLR  
Sbjct: 237 AIIPAQGFVGHMSAELAERPQMVDWALVWLEEGGEPLTESYVNLIPTPQGGTHVNGLRQG 296

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  + +           +  +D  +    VLS K+ +P+F+ Q KE+L S E  S 
Sbjct: 297 LTEAVREFCDFRN-LVPRGVKLTPEDVFDRVAFVLSAKLSEPQFAGQMKERLSSRESASF 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +   + D LS WL +HP + +II +  +DA+  R    +      RK V    +LPGKLA
Sbjct: 356 IGGVIKDSLSLWLNQHPEQGEIIARIAIDAAQTRLKNDKK---VARKRVTAGPALPGKLA 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+  D  ++ELFLVEGDSAGGSAKQ R R+ QAI+PLRGKILN      D++L+SQE+ 
Sbjct: 413 DCTASDISRTELFLVEGDSAGGSAKQARERDFQAIMPLRGKILNTWETGVDQVLASQEVH 472

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            +  A+G   G D  D++KLRY K+ I+ DAD DG HI TLL   F R   +L+  G ++
Sbjct: 473 DIAVAIGLEPGSD--DLSKLRYGKVCILADADSDGLHIATLLCALFLRHFTALVRAGHVF 530

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           +  PPLY I  GK   Y  DE   +  L   +   
Sbjct: 531 VAMPPLYRIDLGKETFYALDEAERDGILGRFAAEH 565



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 728 SIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           +  R+G   + R+KGLGEMN SQL E+TL P TR L+++ ITD
Sbjct: 563 AEHRRGKPQVTRFKGLGEMNPSQLRESTLAPQTRRLVQLSITD 605


>gi|229524416|ref|ZP_04413821.1| topoisomerase IV subunit B [Vibrio cholerae bv. albensis VL426]
 gi|229337997|gb|EEO03014.1| topoisomerase IV subunit B [Vibrio cholerae bv. albensis VL426]
          Length = 626

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/590 (38%), Positives = 333/590 (56%), Gaps = 19/590 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L GY
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGY 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKIQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G     L VTG+ G  +TGT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDT 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F   +F+   L + LR  + L   ++I   DK      E    Y+ G++ +++   + 
Sbjct: 172 KYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDK--VNNNEHRWLYEDGLKDYLAEGVKG 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P   + +    ++  A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 230 YTLLPEEPFTGEFTAQTEAVTWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLD 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    + G+D  +    VLSIKM DP+F+ QTKE+L S +  + V  
Sbjct: 290 AMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL E P  A+ + +  +  +  R    RA     RK +    +LPGKL DC+
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSR---MRASKKVVRKKIASGPALPGKLTDCT 405

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  ++ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  + 
Sbjct: 406 VQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI- 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ++  GI  DS ++  LRY K+ I+ DAD DG HI TLL   F R   +L+  G +Y+  
Sbjct: 465 -SVALGIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAM 523

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           PPLY I  GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 524 PPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQ 573



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   +      +   
Sbjct: 457 ASQEVHDISVALGIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 516

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 577 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRN 620


>gi|19909665|dbj|BAB87028.1| DNA gyrase subunit B [Erythrobacter sp. PC8]
          Length = 482

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 277/484 (57%), Positives = 357/484 (73%), Gaps = 17/484 (3%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM++EV DNAIDE+L G+ D++ + LN DGS +V DNGRGIP  +HKEEG+
Sbjct: 1   DTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVGMHKEEGV 60

Query: 94  SAAEVIMTRLHAGGKF----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           SAAEVIMT+LHAGGKF    +  +YKVSGGLHGVGVSVVNALS WL+L I REG  + M 
Sbjct: 61  SAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELTIWREGKEHWMR 120

Query: 150 FINGILDNPLVVTGSAGN----------DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRE 198
           F +G   N L V G A              GT VTF  S+D F    +F+++ L+HR RE
Sbjct: 121 FEHGDAVNSLEVKGDAPKVDQNPDENGLKKGTRVTFKASTDTFKNVTEFDFEKLEHRYRE 180

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           L+FLNS V+I + DKR  E  E  +FY+GGI AFV +LDR+K+ L+  PI +   +D I 
Sbjct: 181 LAFLNSGVRILIRDKRHEEVVEHDLFYEGGIAAFVRWLDRNKEALISDPISVSAEKDGIG 240

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           ID+A+ WND Y+ENVLCFTNNIPQ+DGGTHL+  R+ALTR +  Y ++    KK+K S+ 
Sbjct: 241 IDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAFRAALTRTLNGYADREGLLKKEKVSLS 300

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           G+D REG T+++S+K+PDP+FSSQTK+KLVSSEVR  +ES + + ++ WLEE+P +AK I
Sbjct: 301 GEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQPLESLMGEKMTEWLEENPADAKAI 360

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++K++DA      A +      RKG + +ASLPGKL+DC ERD  K+E+FLVEGDSAGGS
Sbjct: 361 IQKIIDA-AAAREAAKRAREMSRKGAMSVASLPGKLSDCRERDATKAEIFLVEGDSAGGS 419

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR  + QAILPL+GKILNVERARFD+++SS+E+GTLI A+GTGI +D FD+ KLRYH
Sbjct: 420 AKGGRDSQYQAILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGI-RDEFDLEKLRYH 478

Query: 499 KIII 502
           KI+I
Sbjct: 479 KIVI 482


>gi|21231148|ref|NP_637065.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768844|ref|YP_243606.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112786|gb|AAM40989.1| topoisomerase IV subunit B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574176|gb|AAY49586.1| topoisomerase IV subunit B [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 634

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/594 (37%), Positives = 322/594 (54%), Gaps = 17/594 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M     N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MPTRCMNTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + VTL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGL
Sbjct: 57  AKQVEVTLYKDGSCEVSDDGRGMPVDMHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F    
Sbjct: 117 HGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    FN   L+H LR  + L   + + L D+ + E        + G+  ++      
Sbjct: 177 KYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--EDGLRDYLKGEMAD 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           ++ L          +D   +D A  W          + N IP    GTH++GLRS LT  
Sbjct: 235 RELLPADLFAGSLKKDTEIVDWAAAWVPEGELTQESYVNLIPTAQHGTHVNGLRSGLTDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + +      +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E  
Sbjct: 295 LREFCDFRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGA 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
            +D  S +L ++    + I +  +D +  R           RK V    +LPGKLADC  
Sbjct: 354 AHDAFSLYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCIS 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  
Sbjct: 411 QDLSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAI 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  P
Sbjct: 471 AIGCDPGKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PL+ +  GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 529 PLFRVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRE 582



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 551 LLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+++++ 
Sbjct: 611 LAKKRAGD----RKQWLET 625


>gi|194426352|ref|ZP_03058907.1| DNA topoisomerase IV, B subunit [Escherichia coli B171]
 gi|194415660|gb|EDX31927.1| DNA topoisomerase IV, B subunit [Escherichia coli B171]
 gi|323163082|gb|EFZ48915.1| DNA topoisomerase IV, B subunit [Escherichia coli E128010]
          Length = 630

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/647 (33%), Positives = 333/647 (51%), Gaps = 20/647 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +      +P   
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTQPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFAGDTEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D   
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y   EE  E  L       E       K  + +      ++     +  +    
Sbjct: 531 LGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
               +  I+        +   D  +    +    N L    + +E  
Sbjct: 584 RRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|170679703|ref|YP_001745304.1| DNA topoisomerase IV subunit B [Escherichia coli SMS-3-5]
 gi|170517421|gb|ACB15599.1| DNA topoisomerase IV, B subunit [Escherichia coli SMS-3-5]
          Length = 630

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/648 (34%), Positives = 343/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVIGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 TLWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFTLWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|113971563|ref|YP_735356.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-4]
 gi|114046265|ref|YP_736815.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-7]
 gi|113886247|gb|ABI40299.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-4]
 gi|113887707|gb|ABI41758.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-7]
          Length = 628

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/633 (35%), Positives = 329/633 (51%), Gaps = 15/633 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHTDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y+++F NG     L VTG+ G  +TGT V F P +  F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDASYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + LR  + L   ++I   +K + E  E     + G+  ++         L +
Sbjct: 178 NFSNSKLIYLLRAKAVLCPGLRIKFTNKHTNEVHEWYY--ESGLTDYLKAAVGDNLMLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P          + D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFIGSFKGQIEAADWAITWLPEGGDAINESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +    +LS+KM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 296 EFRN-LIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSGIVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +   A+ + +  ++ +  R  A        RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNSNTELAESLAEMCINNAQKRLKAA---KKVARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              +  DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +YI  PPL+ I
Sbjct: 472 PDSN--DISELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   E  L   S   +      ++           + +   +D   +  
Sbjct: 530 DIGKDVYYALDEAEKEGILDRISAENKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                    E   +  +   +       +    
Sbjct: 589 VQLTIDDAEETNSLMDMLLAKKRSPDRKNWLED 621



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I DA + + L  
Sbjct: 545 EGILDRISAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEETNSLMD 604

Query: 779 RLMGDEVEP-RREFIQE 794
            L+  +  P R+ ++++
Sbjct: 605 MLLAKKRSPDRKNWLED 621


>gi|15892232|ref|NP_359946.1| DNA topoisomerase IV subunit B [Rickettsia conorii str. Malish 7]
 gi|81528439|sp|Q92IW1|PARE_RICCN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|15619368|gb|AAL02847.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7]
          Length = 662

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/656 (34%), Positives = 352/656 (53%), Gaps = 15/656 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + +++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE++ G+A 
Sbjct: 13  NKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDS-NAMHHLVSEVLDNAMDEAVAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           IIT+T++ D S T+ DNGRGIP D H +    SA EVI+T LH+GGKF+   Y  +GGLH
Sbjct: 72  IITITMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L++++ ++G +Y  S+  G     L+   ++    GT + F P  +I
Sbjct: 132 GVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTPDPEI 191

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLD 237
           F     FN   +    R  ++L   V I    +   +        + +  G++ ++S   
Sbjct: 192 FSEKLHFNPKKIYELARSKAYLYRGVTIEWACEVEVQSDIPKKALISFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRS 294
                ++       I+   D I ++ A+ W +      V  + N +P   GGTH  GL+S
Sbjct: 252 TLDNLVIPGIFAGNIESKSDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGTHEQGLKS 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS+ V  
Sbjct: 312 AILRGLKAYGEMIGNKKAA--NLTIEDILETASVVLSIFIAEPSFQGQTKEKLVSNGVSK 369

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ + D    +L      A  +++ V+  +  R + +  ++   RK       LPGKL
Sbjct: 370 PVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKN-ISRKNATQKLRLPGKL 428

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 429 ADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAI 488

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G L
Sbjct: 489 QDLEIALACGSLKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHL 547

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ KPPLY +T+     Y  DEE     +     + + ++       +    +   + + 
Sbjct: 548 YLAKPPLYRLTQSNKTYYAGDEEEKAKLMDKLLKASKAKIEVGRFKGL-GEMMPAQLKE- 605

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +    +         F     I      +  ++    +  +   +++ I  + +
Sbjct: 606 TTMHPEKRSLLKVTLADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELD 661



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 9/162 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K++       + ++      V    +      F F    K +    +      +  L  +
Sbjct: 501 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQS 560

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L+D +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V +
Sbjct: 561 NKTYYAGDEEEKAKLMDKLLKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTL 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            D    D +   LMG + E R +FI E +L       S LDI
Sbjct: 621 ADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELDI 662


>gi|242241013|ref|YP_002989194.1| DNA topoisomerase IV subunit B [Dickeya dadantii Ech703]
 gi|242133070|gb|ACS87372.1| DNA topoisomerase IV, B subunit [Dickeya dadantii Ech703]
          Length = 631

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/648 (35%), Positives = 344/648 (53%), Gaps = 22/648 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHPDQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G +Y+++F  G     L +TG+ G  +TGT V F P    F 
Sbjct: 117 ISVVNALSRRVEVTVRRDGQVYDIAFEQGAKVQDLTITGTCGRRNTGTRVRFWPEESFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I  +DK +   +      + G+  ++         L
Sbjct: 177 SPRFSVSRLTHLLKAKAVLCPGVEILFVDKVNETEQRWCY--QDGLNDYLCEAVNGLPTL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     S D  +++ A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEKPFTGTISGDTEAVEWALLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  E    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNILPRG-VKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++ 
Sbjct: 411 GKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D+ +LRY KI I+ DAD DG HI TLL   F R    L+ +G +Y+  PPLY
Sbjct: 469 IGIDPDSDDLTQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVRDGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DEE     L       E       K  + +      ++     +  + 
Sbjct: 529 RIDLGKEVYYALDEEEKAGIL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 581

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  +  I +  +        D  +    +    N L    +++E
Sbjct: 582 PNTRRLVQLTISEEDVEQTL-ATMDMLLAKKRSEDRRNWLQEKGDRAE 628



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 101/294 (34%), Gaps = 46/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LGK--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHDISVAIGIDPDSDDLTQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVRD 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + GI           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGILEQLKRKKGKPNVQRFKGLGEMNPMQLRE 577

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I   D  Q       L+  +  E RR ++QE    + LD+
Sbjct: 578 TTLDPNTRRLVQLTISEEDVEQTLATMDMLLAKKRSEDRRNWLQEKGDRAELDV 631


>gi|34580748|ref|ZP_00142228.1| DNA gyrase subunit B [Rickettsia sibirica 246]
 gi|28262133|gb|EAA25637.1| DNA gyrase subunit B [Rickettsia sibirica 246]
          Length = 662

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/656 (34%), Positives = 352/656 (53%), Gaps = 15/656 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + +++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE++ G+A 
Sbjct: 13  NKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDS-NAMHHLVSEVLDNAMDEAVAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           IIT+T++ D S T+ DNGRGIP D H +    SA EVI+T LH+GGKF+   Y  +GGLH
Sbjct: 72  IITITMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L++++ ++G +Y  S+  G     L+   ++    GT + F P  +I
Sbjct: 132 GVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTPDPEI 191

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLD 237
           F     FN   +    R  ++L   V I    +   +        + +  G++ ++S   
Sbjct: 192 FSEKLHFNPKKIYELARSKAYLYRGVTIEWACEVEVQSDIPKKALISFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRS 294
                ++       I+ + D I ++ A+ W +      V  + N +P   GGTH  GL+S
Sbjct: 252 TLDNLVIPGIFAGNIESTSDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGTHEQGLKS 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS+ V  
Sbjct: 312 AILRGLKAYGEMIGNKKAA--NLTIEDILETASVVLSIFIAEPSFQGQTKEKLVSNGVSK 369

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ + D    +L      A  +++ V+  +  R + +  ++   RK       LPGKL
Sbjct: 370 PVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKN-ISRKNATQKLRLPGKL 428

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 429 ADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAI 488

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G L
Sbjct: 489 QDLEIALACGSLKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHL 547

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ KPPLY +T+     Y  DEE           + + ++       +    +   + + 
Sbjct: 548 YLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGL-GEMMPAQLKE- 605

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +    +         F     I      +  ++    +  +   +++ I  + +
Sbjct: 606 TTMHPEKRSLLKVTLADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELD 661



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K++       + ++      V    +      F F    K +    +      +  L  +
Sbjct: 501 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQS 560

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L D +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V +
Sbjct: 561 NKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTL 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            D    D +   LMG + E R +FI E +L       S LDI
Sbjct: 621 ADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELDI 662


>gi|315502965|ref|YP_004081852.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
 gi|315409584|gb|ADU07701.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
          Length = 704

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 236/676 (34%), Positives = 352/676 (52%), Gaps = 41/676 (6%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y AD +  L+GLDAV+KRP MYIG TD   G+ H++ E+LDN+ DE + G+A  + V L+
Sbjct: 28  YGADDLTHLEGLDAVRKRPGMYIGSTDS-RGVGHLVNEILDNSTDEGVAGHATKVDVILH 86

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS  V D+GRGIPTD+H + GIS  E+++TRLHAGGKF    YK SGGLHGVG S VN
Sbjct: 87  ADGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 146

Query: 130 ALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTG--SAGNDTGTEV 173
           ALS    + ++R G ++ MSF +G+         D P      L + G    G  TGT +
Sbjct: 147 ALSRRFDVTVRRGGKVHAMSFRHGVPGVFDGDGPDAPFTPGPGLQIVGAMKRGQRTGTSI 206

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            +      F      + +T++ +LR  +FL   V   L D+   EP E +  +  G+   
Sbjct: 207 RWWHDPRYFETGATLDTETVRLKLRNTAFLVPGVAYRLRDETGEEPGEESFHFPDGLTDM 266

Query: 233 VSYLDRHKKPLMQSPIRIQGS------------------RDNISIDLAMRWNDGYHENVL 274
           V +L       +   + + G                   +    +++A RW  GY   V 
Sbjct: 267 VEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEVEVAFRWGTGYERTVE 326

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEK-SFGSKKDKRSVIGDDCREGFTSVLSIK 333
           CFTN I    GGTH  G   AL R +           K  + +   DD  EG T+V+ ++
Sbjct: 327 CFTNTIRNAHGGTHRKGFERALARTLADAARNARGLLKPKEDAPTLDDVLEGMTAVVHVR 386

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE--AKIIVKKVLDASMVRDA 391
           +P+P+F+SQTK++L ++ +  V++  V   L +WLE+   +  A+ +++K++DA+ VR  
Sbjct: 387 IPEPQFTSQTKDELSTAGITKVLQGLVEAHLKSWLEDRRTKAEARTVLQKIVDAARVRLT 446

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
            ++ +D  RRK  L+ A++P KL DC     ++SELF+VEGDSA G+++  RS E QA+L
Sbjct: 447 QKQQKDAARRKTALEGAAMPAKLVDCRATGVERSELFIVEGDSALGTSRMARSSEYQALL 506

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           P+RGKILNV++A   ++L + E   ++  LG G G+  FD++ LRY +++IM DADVDGA
Sbjct: 507 PIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRT-FDLSALRYGRVLIMADADVDGA 565

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSE 570
           HIRTLL+T F R M  LI  G LY   PPL+ I T+G++ Q V      E     + L +
Sbjct: 566 HIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPQTVYTYTQAEMEATVRKLEK 625

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
             +               +  +                    +E A            E 
Sbjct: 626 AGKQIVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDDVEAAERILELLMGEKVEP 685

Query: 631 NVSLASKLANRLNFIA 646
             +     A+R++  A
Sbjct: 686 RRNWLIDSADRVDRDA 701



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 9/131 (6%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICNGDK-IKITGPCSL-----LDTIFSIGRK 732
            + +  ++Y R  I + R+      +  +   G     +           +  +   G++
Sbjct: 570 LLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPQTVYTYTQAEMEATVRKLEKAGKQ 629

Query: 733 GIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
            ++ + R+KGLGEM+A +LWETT+NP TR++ R+ + D   A+ +   LMG++VEPRR +
Sbjct: 630 IVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDDVEAAERILELLMGEKVEPRRNW 689

Query: 792 IQENSLPSALD 802
           + +++     D
Sbjct: 690 LIDSADRVDRD 700


>gi|110835355|ref|YP_694214.1| DNA topoisomerase IV subunit B [Alcanivorax borkumensis SK2]
 gi|110648466|emb|CAL17942.1| DNA topoisomerase IV, B subunit [Alcanivorax borkumensis SK2]
          Length = 628

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 212/556 (38%), Positives = 315/556 (56%), Gaps = 14/556 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y +++I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNNYTSENIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHAKSIKV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V D+GRG+P D+H  +     EVI++ LH+GGKF+  +Y+ SGGLHGVGVS
Sbjct: 58  TLFKDGGVEVEDDGRGMPVDMHPVQKKPGVEVILSTLHSGGKFSNNNYQFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ L++ +KR+G ++ M F +G   + L V  +    +TGT + F P S  F   
Sbjct: 118 VVNALSTKLEILVKRDGQLHRMEFGDGEKRSDLEVIDTVGKRNTGTILRFWPDSQYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
             +   L+H LR  + L   + ++L ++++ E          G+  ++       + +  
Sbjct: 178 KISVSRLKHLLRAKAVLCPGLLVTLDNQQTGESDAWQF--DDGLIEYLLESSTGWERVPA 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     S +  ++D A+ W  +G       + N IP   GGTH++GLRS L   +  + 
Sbjct: 236 EPFNGAMSAETEAVDWAVTWLPEGGELVQEAYVNLIPTAQGGTHVNGLRSGLLEAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EFRNLLPRG-VKLTPEDIWDRAAFVLSVKMQDPQFAGQTKERLSSRQTAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +H  EA+ +    ++ +       RA     RK V    +LPGKLADC+  DP +
Sbjct: 355 SLWLNQHTDEAEKLADLCINNAQ---KRLRAAKKVTRKKVTSGPALPGKLADCTSDDPSQ 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SE+FLVEGDSAGGSAKQ R R  QAI+PLRGKI+N      +++L SQEI  +  A+  G
Sbjct: 412 SEIFLVEGDSAGGSAKQARDRVYQAIMPLRGKIMNTWEVDSNEVLGSQEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I   S D++ LRY K+ I+ DAD DG HI TL+   F R  P+L+  G +++  PPLY I
Sbjct: 470 IEPGSDDLSSLRYGKVCILADADSDGLHIATLICALFLRHFPALVKQGHVFVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLE 560
             GK + Y  D++  +
Sbjct: 530 DVGKEVYYALDKQERD 545



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLR--VKITDASQADDLFS 778
           +LD I +  ++G +++ R+KGLGEMN  QL ETT+  DTR L+R  V   D      L  
Sbjct: 547 VLDRIKAEKKRGKVNVTRFKGLGEMNPLQLRETTMARDTRRLVRLDVSTDD--GTHQLMD 604

Query: 779 RL 780
            L
Sbjct: 605 ML 606


>gi|229586475|ref|YP_002844976.1| DNA topoisomerase IV subunit B [Rickettsia africae ESF-5]
 gi|228021525|gb|ACP53233.1| DNA topoisomerase IV, B subunit [Rickettsia africae ESF-5]
          Length = 662

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/656 (34%), Positives = 352/656 (53%), Gaps = 15/656 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + +++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE++ G+A 
Sbjct: 13  NKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTD-LNAMHHLVSEVLDNAMDEAVAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           IIT+T++ D S T+ DNGRGIP D H +    SA EVI+T LH+GGKF+   Y  +GGLH
Sbjct: 72  IITITMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L++++ ++G +Y  S+  G     L+   ++    GT + F P  +I
Sbjct: 132 GVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTPDPEI 191

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLD 237
           F     FN   +    R  ++L   V I    +   +        + +  G++ ++S   
Sbjct: 192 FSEKLHFNPKKIYELARSKAYLYRGVTIEWACEVEVQSDIPKKALISFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRS 294
                ++       I+ + D I ++ A+ W +      V  + N +P   GGTH  GL+S
Sbjct: 252 TLDNLVIPGIFAGNIESTSDKIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGTHEQGLKS 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS+ V  
Sbjct: 312 AILRGLKAYGEMIGNKKAA--NLTIEDILETASVVLSIFITEPSFQGQTKEKLVSNGVSK 369

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ + D    +L      A  +++ V+  +  R + +  ++   RK       LPGKL
Sbjct: 370 PVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKN-ISRKNATQKLRLPGKL 428

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 429 ADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAI 488

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G L
Sbjct: 489 QDLEIALACGSLKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHL 547

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ KPPLY +T+     Y  DEE           + + ++       +    +   + + 
Sbjct: 548 YLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGL-GEMMPAQLKE- 605

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +    +         F     I      +  ++    +  +   +++ I  + +
Sbjct: 606 TTMHPEKRSLLKVTLADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELD 661



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K++       + ++      V    +      F F    K +    +      +  L  +
Sbjct: 501 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQS 560

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L D +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V +
Sbjct: 561 NKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTL 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            D    D +   LMG + E R +FI E +L       S LDI
Sbjct: 621 ADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELDI 662


>gi|254516014|ref|ZP_05128074.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR5-3]
 gi|219675736|gb|EED32102.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR5-3]
          Length = 640

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/645 (35%), Positives = 334/645 (51%), Gaps = 22/645 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y ++SI++L GL+ V+KRP MY   TD     +H+  E++DN++DE+L G+A  I V 
Sbjct: 14  SDYSSESIEVLTGLEPVRKRPGMY---TDTTRP-NHLAQEIIDNSVDEALAGFARQIDVV 69

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS + SD+GRG+P D+H E+     EVI+  LHAGGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 70  LHTDGSLSASDDGRGMPVDMHPEQKKPGVEVILCTLHAGGKFSSKNYQFSGGLHGVGVSV 129

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L + I+R+G +++MSF  G   + L V  +    +TGT V F P    F   +
Sbjct: 130 VNALSKQLTVTIRRDGEVHQMSFAGGEKTSELEVIDTCGKRNTGTNVRFTPDPQYFDSIN 189

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   LQH LR  + L   ++++  D++  E      +Y+ G+  ++         L   
Sbjct: 190 FSVPRLQHVLRAKAVLCPGLRVTFFDEKKNEK--EEWYYEDGLTDYLLSATDGFTTLPTE 247

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     S    ++D A++W  +G       + N IP   GGTH++GLR+ L   +  + E
Sbjct: 248 PFTGSFSGSTEAVDWAVQWLPEGGELITESYVNLIPTAQGGTHVNGLRTGLLDAMRDFCE 307

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  DD  E  + VLS K+ DP+FS QTKE+L S E  + V     D  S
Sbjct: 308 IRSLLPRG-VKLAPDDIWERCSYVLSSKLEDPQFSGQTKERLSSREAAAFVSGVAKDAFS 366

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  +A+ + +  ++ +  R  + +      RK V    +LPGKLADCS  D  ++
Sbjct: 367 LWLNQHTSDAEALAELCINTAQRRLRSAKK---VVRKKVSAGPALPGKLADCSGEDISRT 423

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN       ++L+SQE+  +  ++  GI
Sbjct: 424 ELFLVEGDSAGGSAKQARDREIQAILPLRGKILNTWEVDSQEILASQEVHNI--SIALGI 481

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
                D++ LRY K+ I+ DAD DG HI TL+   F R    L+  G +Y+  PPLY I 
Sbjct: 482 DPADDDLSGLRYGKVCILADADSDGLHIATLICALFVRHFRPLVSAGHVYVAMPPLYRID 541

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   +  L             + K           + +   +        
Sbjct: 542 IGKEVFYALDEAEKQGILDRIE--------AEKKRGKVNVQRFKGLGEMNPLQLRETTMS 593

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
           P+  +    +       N   D  +    A    + L    + +E
Sbjct: 594 PDTRRLVQLRLEAGDETNEMLDMLLAKKRAGDRKSWLETKGDLAE 638



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  ++G +++QR+KGLGEMN  QL ETT++PDTR L+++++    + +++   L
Sbjct: 558 ILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMSPDTRRLVQLRLEAGDETNEMLDML 617

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 618 LAKKRAGD----RKSWLET 632


>gi|166712481|ref|ZP_02243688.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 629

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/588 (38%), Positives = 320/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKFN ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F      F   
Sbjct: 118 VVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L  
Sbjct: 178 KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAEHEMLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 DLFVGSLKKDTEIVDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDEEEKTTLLDKVAREKMKGQISVTRFKGLGEMNPQQLRE 577



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD +     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 546 LLDKVAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML 605


>gi|330721164|gb|EGG99282.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC2047]
          Length = 631

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 230/647 (35%), Positives = 344/647 (53%), Gaps = 20/647 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y+ADSI++L GLD VK+RP MY   T+     +H+  EV+DN+IDE++ G+A  +
Sbjct: 1   MSTGTYNADSIEVLSGLDPVKRRPGMY---TETTRP-NHLAQEVIDNSIDEAMAGFARRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ DGS +VSD+GRG+P D+H EEG+S  E+I+TRLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVELHNDGSLSVSDDGRGMPVDIHPEEGVSGVELILTRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183
           VSVVNALS  L + IKR G  Y ++F +G     L+  G+ G  +TGT V F P +  F 
Sbjct: 117 VSVVNALSYRLNVEIKRGGKKYRIAFASGDKTEDLIEIGTVGQRNTGTLVHFWPEAKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   ++++ ID  S E    +  Y+ G++ +++   +  + +
Sbjct: 177 SPKFSVSRLKHTLRAKAVLCPGLEVNFIDHNSGER--ESWCYEDGLQDYLTQATQGFETI 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     S D  + + A++W  +G       + N IP   GGTH++G RS +   +  
Sbjct: 235 PKEPFTGSLSGDEEAAEWAVQWLPEGGELITESYVNLIPTAQGGTHVNGFRSGMIDSLRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +    +LSIKM DP+FS QTKE+L S +    V   V D
Sbjct: 295 FCEFRNLLPRG-VKLSAEDLWDRCAYILSIKMSDPQFSGQTKERLSSRQCAPFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL  +   A+++    ++ +       RA     RK V    +LPGKLADCS +D 
Sbjct: 354 AFSLWLNSNTEAAELLADMAINNAQ---RRLRASKKVVRKKVTQGPALPGKLADCSSQDV 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R R  QAILPLRGKILN       ++L SQE+  +  ALG
Sbjct: 411 NQTELFLVEGDSAGGSAKQARDRVFQAILPLRGKILNTWEVDSSEILGSQEVHDISVALG 470

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
              G D  +++ LRY KI I+ DAD DG HI TLL   F R    ++  G +Y+  PPL+
Sbjct: 471 VDPGSD--NLDGLRYGKICILADADSDGLHIATLLCALFVRHFKPMVMAGHVYVAMPPLF 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y        +Y     L          K  + +      ++     +  + 
Sbjct: 529 RIDVGKEVYYALS-----EYEKQGVLDRIAAEKKRGKVNVQRFKGLGEMNPMQLRETTMT 583

Query: 603 DFYPNHDKTFIEQAVISG-VFNCESDQEINVSLASKLANRLNFIAEK 648
                  +  ++    +  V +    ++ +      L    N ++ +
Sbjct: 584 PDTRRLVRLTLDAGDGTHEVMDKLLAKKRSQDRKQWLEESGNLVSLE 630



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 11/84 (13%)

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLN 756
           +E Y  +      G          +LD I +  ++G +++QR+KGLGEMN  QL ETT+ 
Sbjct: 534 KEVYYALSEYEKQG----------VLDRIAAEKKRGKVNVQRFKGLGEMNPMQLRETTMT 583

Query: 757 PDTRSLLRVKITDASQADDLFSRL 780
           PDTR L+R+ +       ++  +L
Sbjct: 584 PDTRRLVRLTLDAGDGTHEVMDKL 607


>gi|323498028|ref|ZP_08103036.1| DNA topoisomerase IV subunit B [Vibrio sinaloensis DSM 21326]
 gi|323316904|gb|EGA69907.1| DNA topoisomerase IV subunit B [Vibrio sinaloensis DSM 21326]
          Length = 626

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 222/589 (37%), Positives = 323/589 (54%), Gaps = 17/589 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A  + +L+GLD V+ RP MY   T+ E   +H+  EV+DN++DE+L G+
Sbjct: 1   MAEQ-----YNAKDLSVLEGLDPVRHRPGMY---TETERP-NHLAQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H E+GIS  E+I+T+LHAGGKF+  +YK SGGL
Sbjct: 52  AKKIKVILHADQSLEVIDDGRGMPVDIHPEKGISGVELILTKLHAGGKFSNDNYKFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ +KREG ++E++F +G     L VTG+ G+ +TGT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVKREGQVHEIAFEHGNAVTELTVTGTCGHRNTGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L + LR  + L   ++I+  DK + E  +                   
Sbjct: 172 KYFDSYKFSSLRLVNNLRAKAVLCPGLEITFSDKVNNEEHKWFYEDGLKDYLAEGVKGYE 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             P            +  +    +   +G       + N +P K GGTH++GLR  L   
Sbjct: 232 VLPAEPYIGEFTADTEMATW-AVIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLLDA 290

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    + GDD  +  + VLS+KM DP+F+ QTKE+L S +  + V   
Sbjct: 291 MREFCEFRNLLPRG-VKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSGV 349

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DCS 
Sbjct: 350 VKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDCSV 406

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI-- 464

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ++  GI  D+ +++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  P
Sbjct: 465 SVALGIDPDNDNLDGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMP 524

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           PLY I  GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 525 PLYRIDCGKEVFYALDDDEKEGILERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D     ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDNESTMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQNN 620


>gi|24375387|ref|NP_719430.1| DNA topoisomerase IV subunit B [Shewanella oneidensis MR-1]
 gi|24350217|gb|AAN56874.1|AE015822_6 DNA topoisomerase IV, B subunit [Shewanella oneidensis MR-1]
          Length = 628

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 222/633 (35%), Positives = 329/633 (51%), Gaps = 15/633 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHTDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y+++F NG     L VTG+ G  +TGT V F P +  F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDTSYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + LR  + L   ++I   +K + E  E     + G+  ++         L +
Sbjct: 178 NFSNSKLIYLLRAKAVLCPGLRIKFTNKHTNEVHEWYY--ESGLTDYLKAAVGDNIMLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P          + D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFIGSFKGQIEAADWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +    +LS+KM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 296 EFRN-LIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSGIVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +   A+ + +  ++ +  R  A        RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNSNTELAESLAEMCINNAQKRLKAA---KKVARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              +  DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +YI  PPL+ I
Sbjct: 472 PDSN--DISELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+   E  L   +   +      ++           + +   +D   +  
Sbjct: 530 DIGKDVYYALDDAEKEGVLDRINAENKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                    E   +  +   +       +    
Sbjct: 589 VQLTIDDAEETDSLMDMLLAKKRSPDRKNWLED 621



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I DA + D L  
Sbjct: 545 EGVLDRINAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEETDSLMD 604

Query: 779 RLMGDEVEP-RREFIQE 794
            L+  +  P R+ ++++
Sbjct: 605 MLLAKKRSPDRKNWLED 621


>gi|293412409|ref|ZP_06655132.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|291469180|gb|EFF11671.1| DNA topoisomerase IV [Escherichia coli B354]
          Length = 630

 Score =  486 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/648 (34%), Positives = 343/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVIGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 TLWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFTLWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|225677156|ref|ZP_03788155.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590823|gb|EEH12051.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 449

 Score =  486 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 239/435 (54%), Positives = 309/435 (71%), Gaps = 7/435 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           N   +SY+AD+I+IL+GLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDESL GY D 
Sbjct: 13  NTMENSYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCDK 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V++N DGS +V+DNGRGIPTD+H+EEGISAAEVIM +LHAGGKF+  +YKVSGGLHGV
Sbjct: 73  IEVSINADGSVSVTDNGRGIPTDIHEEEGISAAEVIMIQLHAGGKFDSNTYKVSGGLHGV 132

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALSSWL+L I R    + M F +G    PL V     N  GT+VTF+PS++ F+
Sbjct: 133 GISVVNALSSWLELTIWRNKKEHFMRFEDGESIEPLKVVNENTNKRGTKVTFMPSTETFN 192

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA-----FVSYLDR 238
             +F+Y TL+ R+REL+FLNS++ I+L D R+    E         +             
Sbjct: 193 GINFSYSTLESRIRELAFLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLD 252

Query: 239 HKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
             K  +     ++G      IS++++M WND Y+EN+LCFTNNI Q+DGGTHL+G RSAL
Sbjct: 253 KNKTHVTKIASMKGDAEDLGISLEISMEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSAL 312

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I +Y       KK K ++ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VV
Sbjct: 313 TRCINNYATNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVV 372

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES V+D LS  LE  P  A  IV++ + ++  R+AAR+AR+L + K  +DIA+LPGKLAD
Sbjct: 373 ESIVSDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIATLPGKLAD 432

Query: 417 CSERDPKKSELFLVE 431
           C E+ P+ SELF+VE
Sbjct: 433 CQEKAPELSELFIVE 447


>gi|218894062|ref|YP_002442931.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa LESB58]
 gi|218774290|emb|CAW30107.1| topoisomerase IV subunit B [Pseudomonas aeruginosa LESB58]
          Length = 629

 Score =  486 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/644 (35%), Positives = 336/644 (52%), Gaps = 23/644 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  + V 
Sbjct: 2   ATYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKSVQVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V D+GRG+P D+H EEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+SV
Sbjct: 58  LHQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++R+KR+ N Y M+F NG  D+ L V G+    +TGT V F P    F    
Sbjct: 118 VNALSTRVEVRVKRDANEYRMTFANGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSAK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H L+  + L   + +   DK + E  E     + G+ ++++        L   
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDKNTGERVEWHF--EDGLRSYLTDAVAELPRLPDE 235

Query: 247 PIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P          ++  A +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 236 PFCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   V D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL EH      + +  +  +       +A     RK +    +LPGKLADC+ ++P ++
Sbjct: 355 LWLNEHAEIGLQLAELAISNA---GRRLKAGKKVERKKITQGPALPGKLADCAGQEPMRA 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G    D+ +LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY I 
Sbjct: 472 GAS--DLAQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   +  L   +  ++       K  +++      ++     +  +    
Sbjct: 530 LGKDIYYALDEAERDGILERLAAEKKR-----GKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 606 PNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFI 645
               +  +E A     I  +   +       S      N    +
Sbjct: 585 RRLVQLTLEDATGTLEIMDMLLAKKRAGDRKSWLESKGNLAEVL 628



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + DA+   ++   L
Sbjct: 546 ILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTLEIMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 606 LAKKRAGD----RKSWLES 620


>gi|293192587|ref|ZP_06609541.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309]
 gi|292820094|gb|EFF79091.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309]
          Length = 706

 Score =  486 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/661 (34%), Positives = 350/661 (52%), Gaps = 56/661 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S Y+A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+LEG+ D I
Sbjct: 8   TDASDYNARHLSVLEGLEAVRKRPGMYIGSTD-HRGLMHCLWEIIDNAVDEALEGHCDTI 66

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S +V+DNGRGIP D+   +G++  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 67  DVRLHPDHSASVADNGRGIPVDIVPGQGLTGVEVVYTKLHAGGKFGGGSYAASGGLHGVG 126

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGI-----------LDNP---------LVVTGS 164
            SVVNALS+ L +++ R G  +EM F  G             ++P         L   G 
Sbjct: 127 ASVVNALSARLDVQVDRGGKTHEMCFRRGEPGEFDDSKQRTPNSPFKPFVDGSTLKTVGK 186

Query: 165 AGND-TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                TGT V F     IF   + F+++ L  R R+ +FL   + I+  D+R  E    +
Sbjct: 187 VKKSLTGTRVRFWADFQIFPSTEGFSWENLLARARQTAFLVPGLTINCYDERGEEELHES 246

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----------------------RDNISID 260
             + GG+  F ++L             I G                            +D
Sbjct: 247 FRFDGGVVDFANWLASDGPV--TDTWHITGEGTYNETVQALDSETGHLRATEVERTCEVD 304

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK---DKRSV 317
           +A+RW  GY   V  F N I    GGTH++G   A+ + + + ++K+    K        
Sbjct: 305 IALRWGIGYDTTVQSFVNIIATPKGGTHVTGFEQAVLKTLRAAIDKNARKLKVGAKDGRP 364

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
             DD + G T+V++++ P+P+F  QTKE L + ++R+VV   V+D L A       + K 
Sbjct: 365 EKDDVQAGMTAVITVRFPEPQFEGQTKETLGTPQIRTVVNRVVSDWLKAKFASSKRDDKQ 424

Query: 378 ----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
               +++KV+     R +AR  ++++R+K  L+ +SLP KLADC   D +++ELF+VEGD
Sbjct: 425 QTSLLMEKVVGEMKARVSARLHKEISRKKNALETSSLPAKLADCRLEDVEETELFIVEGD 484

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SA G+AK  R+   QA+ P+RGKILNV++A    ML++ E   +I  +G G G+  FD++
Sbjct: 485 SALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRT-FDLS 543

Query: 494 KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYV 553
           + RY K+I+MTDADVDGAHIRTLLLT FFR M  ++  G +Y   PPL+ I      +  
Sbjct: 544 QARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGKGRKK 603

Query: 554 KDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
           ++      +  +++ L+         K  I +      +D     +  +   + +  +  
Sbjct: 604 REYIYTYSEDELHRKLAALRRSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSLRRIT 663

Query: 613 I 613
           +
Sbjct: 664 L 664



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 13/187 (6%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +     ++   ++ AN +  I   S +++  S      ++      V    +    
Sbjct: 508 ILNVQKASTADMLANAECANIIQVIGAGSGRTFDLSQARYGKVILMTDADVDGAHIRTLL 567

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSL------ICNGDKIKITGPCSLLDTIFSIGRKGI 734
               F      + + RI      +  +          + I       L   + ++ R G 
Sbjct: 568 LTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGKGRKKREYIYTYSEDELHRKLAALRRSGR 627

Query: 735 S----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEP 787
           +    +QRYKGLGEM+A QL ETT++   RSL R+ + D      A+D+F  LMG  V P
Sbjct: 628 TWKEPIQRYKGLGEMDADQLAETTMDRAHRSLRRITLADEEALRQAEDVFELLMGSTVGP 687

Query: 788 RREFIQE 794
           R+EFI E
Sbjct: 688 RKEFIVE 694


>gi|330501591|ref|YP_004378460.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina NK-01]
 gi|328915877|gb|AEB56708.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina NK-01]
          Length = 632

 Score =  486 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/643 (34%), Positives = 336/643 (52%), Gaps = 15/643 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           Q ++Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I 
Sbjct: 3   QQNAYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKSIQ 58

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L+ D S  V D+GRG+P D+H EEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+
Sbjct: 59  VILHEDNSLEVLDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGI 118

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184
           SVVNALS+ + + +KR+GN Y+MSF +G   + L V G+    +TGT V F P +  F  
Sbjct: 119 SVVNALSTRVVVTVKRDGNEYQMSFADGFKASDLEVIGTVGKRNTGTSVHFWPDAKYFDS 178

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+   L+H L+  + L   + ++  DK + E   +   Y+ G+ +++       + L 
Sbjct: 179 FKFSVSRLKHVLKAKAVLCPGLSVTFEDKAAGEK--VEWLYEDGLRSYLVDAVSEFERLP 236

Query: 245 QSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             P     + +  ++D A +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 AEPFCGALAGNKEAVDWALLWLPEGGDAVQESYVNLIPTAQGGTHVNGLRQGLLDAMREF 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  +D  E    VLS+KM D +FS QTKE+L S E  + V   V D 
Sbjct: 297 CEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQDAQFSGQTKERLSSREAAAFVSGVVKDA 355

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL  +P     + +  +  +       +A     RK +    +LPGKLADC+ ++P 
Sbjct: 356 FSLWLNANPETGLQLAELAISNA---GRRLKAGKKVERKKITQGPALPGKLADCAGQNPL 412

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           + ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G 
Sbjct: 413 RCELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGSEVLASQEVHDIAVAIGI 472

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
             G +  D++ LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY 
Sbjct: 473 DPGSN--DLSGLRYGKICILADADSDGLHIATLLCALFVRHFRPLVDAGHVYVAMPPLYR 530

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  D+   +  L      +       ++           + +   +D   + 
Sbjct: 531 IDLGKEIFYALDDAERDGILDRLVAEKRRGKPQVTRFKGLGEMNPPQLRE-TTMDPNTRR 589

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
                   F     +  +   +       +      N    +A
Sbjct: 590 LVQLTLDDFDGTREVMDMLLAKKRASDRKNWLETKGNLAEVLA 632



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  R+G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     ++   L
Sbjct: 549 ILDRLVAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFDGTREVMDML 608


>gi|26249607|ref|NP_755647.1| DNA topoisomerase IV subunit B [Escherichia coli CFT073]
 gi|82778361|ref|YP_404710.1| DNA topoisomerase IV subunit B [Shigella dysenteriae Sd197]
 gi|91212456|ref|YP_542442.1| DNA topoisomerase IV subunit B [Escherichia coli UTI89]
 gi|110643276|ref|YP_671006.1| DNA topoisomerase IV subunit B [Escherichia coli 536]
 gi|117625344|ref|YP_854666.1| DNA topoisomerase IV subunit B [Escherichia coli APEC O1]
 gi|187730460|ref|YP_001881797.1| DNA topoisomerase IV subunit B [Shigella boydii CDC 3083-94]
 gi|191172547|ref|ZP_03034087.1| DNA topoisomerase IV, B subunit [Escherichia coli F11]
 gi|215488363|ref|YP_002330794.1| DNA topoisomerase IV subunit B [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560115|ref|YP_002393028.1| DNA topoisomerase IV subunit B [Escherichia coli S88]
 gi|218691333|ref|YP_002399545.1| DNA topoisomerase IV subunit B [Escherichia coli ED1a]
 gi|227887749|ref|ZP_04005554.1| DNA topoisomerase IV subunit B [Escherichia coli 83972]
 gi|237706211|ref|ZP_04536692.1| topoisomerase IV subunit B [Escherichia sp. 3_2_53FAA]
 gi|300973274|ref|ZP_07172113.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 45-1]
 gi|300993488|ref|ZP_07180429.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 200-1]
 gi|301048139|ref|ZP_07195176.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 185-1]
 gi|306816617|ref|ZP_07450749.1| DNA topoisomerase IV subunit B [Escherichia coli NC101]
 gi|309785325|ref|ZP_07679956.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1617]
 gi|312968625|ref|ZP_07782834.1| DNA topoisomerase IV, B subunit [Escherichia coli 2362-75]
 gi|331648830|ref|ZP_08349918.1| DNA topoisomerase IV, B subunit [Escherichia coli M605]
 gi|331659322|ref|ZP_08360264.1| DNA topoisomerase IV, B subunit [Escherichia coli TA206]
 gi|26110015|gb|AAN82220.1|AE016766_308 Topoisomerase IV subunit B [Escherichia coli CFT073]
 gi|81242509|gb|ABB63219.1| DNA topoisomerase IV subunit B [Shigella dysenteriae Sd197]
 gi|91074030|gb|ABE08911.1| topoisomerase IV subunit B [Escherichia coli UTI89]
 gi|110344868|gb|ABG71105.1| topoisomerase IV subunit B [Escherichia coli 536]
 gi|115514468|gb|ABJ02543.1| DNA topoisomerase IV subunit B [Escherichia coli APEC O1]
 gi|168812185|gb|ACA30266.1| ParE [Shigella boydii]
 gi|187427452|gb|ACD06726.1| DNA topoisomerase IV, B subunit [Shigella boydii CDC 3083-94]
 gi|190907215|gb|EDV66814.1| DNA topoisomerase IV, B subunit [Escherichia coli F11]
 gi|215266435|emb|CAS10873.1| DNA topoisomerase IV, subunit B [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218366884|emb|CAR04654.1| DNA topoisomerase IV, subunit B [Escherichia coli S88]
 gi|218428897|emb|CAR09845.2| DNA topoisomerase IV, subunit B [Escherichia coli ED1a]
 gi|222034762|emb|CAP77504.1| DNA topoisomerase 4 subunit B [Escherichia coli LF82]
 gi|226899251|gb|EEH85510.1| topoisomerase IV subunit B [Escherichia sp. 3_2_53FAA]
 gi|227835145|gb|EEJ45611.1| DNA topoisomerase IV subunit B [Escherichia coli 83972]
 gi|294490177|gb|ADE88933.1| DNA topoisomerase IV, B subunit [Escherichia coli IHE3034]
 gi|300299975|gb|EFJ56360.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 185-1]
 gi|300305085|gb|EFJ59605.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 200-1]
 gi|300410854|gb|EFJ94392.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 45-1]
 gi|305850182|gb|EFM50641.1| DNA topoisomerase IV subunit B [Escherichia coli NC101]
 gi|307555134|gb|ADN47909.1| topoisomerase IV subunit B [Escherichia coli ABU 83972]
 gi|307625356|gb|ADN69660.1| DNA topoisomerase IV subunit B [Escherichia coli UM146]
 gi|308926445|gb|EFP71921.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1617]
 gi|312286843|gb|EFR14754.1| DNA topoisomerase IV, B subunit [Escherichia coli 2362-75]
 gi|312947600|gb|ADR28427.1| DNA topoisomerase IV subunit B [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288799|gb|EFU48197.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 110-3]
 gi|315295079|gb|EFU54416.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 153-1]
 gi|315297702|gb|EFU56979.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 16-3]
 gi|320184185|gb|EFW59001.1| Topoisomerase IV subunit B [Shigella flexneri CDC 796-83]
 gi|323951438|gb|EGB47313.1| DNA topoisomerase IV [Escherichia coli H252]
 gi|323957810|gb|EGB53524.1| DNA topoisomerase IV [Escherichia coli H263]
 gi|324011956|gb|EGB81175.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 60-1]
 gi|330909096|gb|EGH37610.1| topoisomerase 4 subunit B [Escherichia coli AA86]
 gi|331042577|gb|EGI14719.1| DNA topoisomerase IV, B subunit [Escherichia coli M605]
 gi|331053904|gb|EGI25933.1| DNA topoisomerase IV, B subunit [Escherichia coli TA206]
 gi|332092196|gb|EGI97274.1| DNA topoisomerase IV, B subunit [Shigella boydii 3594-74]
          Length = 630

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|156932596|ref|YP_001436512.1| DNA topoisomerase IV subunit B [Cronobacter sakazakii ATCC BAA-894]
 gi|156530850|gb|ABU75676.1| hypothetical protein ESA_00378 [Cronobacter sakazakii ATCC BAA-894]
          Length = 630

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/583 (37%), Positives = 317/583 (54%), Gaps = 12/583 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             SY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQSYNADAIEVLTGLEPVRRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHARRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ +KR+G IY ++F NG     L V G+     TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVKRDGQIYNIAFENGEKVKELSVVGTCPKRQTGTSVHFWPDEKFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLTHLLKAKAVLCPGVEINFKDQVNNTEQRWCYQDGLNDYLSEAVNGLITLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFSGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  E    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDVFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQAAEQLAELAIASAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+  G +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKGGHVYVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            GK + Y  DEE     L      +        KG+   N ++
Sbjct: 531 LGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 100/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   +++        +K V+ K             D   +D
Sbjct: 349 VVKDVFSLWLNQNVQAAEQLAELAIASAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +  G
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKG 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQAD--DLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I+D   A    +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTISDDDDARTLAVMDMLLAKKRSEDRRNWLQE 621


>gi|154508954|ref|ZP_02044596.1| hypothetical protein ACTODO_01470 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798588|gb|EDN81008.1| hypothetical protein ACTODO_01470 [Actinomyces odontolyticus ATCC
           17982]
          Length = 706

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/661 (34%), Positives = 351/661 (53%), Gaps = 56/661 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S Y+A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+LEG+ D I
Sbjct: 8   TDASDYNARHLSVLEGLEAVRKRPGMYIGSTD-HRGLMHCLWEIIDNAVDEALEGHCDTI 66

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S +V+DNGRGIP D+   +G++  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 67  DVRLHPDHSASVADNGRGIPVDIVPGQGLTGVEVVYTKLHAGGKFGGGSYAASGGLHGVG 126

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGI-----------LDNP---------LVVTGS 164
            SVVNALS+ L +++ R G  +EM F  G             ++P         L   G 
Sbjct: 127 ASVVNALSARLDVQVDRGGKTHEMCFRRGEPGEFDDSKQRTPNSPFKPFVDGSTLKTVGK 186

Query: 165 AGN-DTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                TGT V F     IF   + F+++ L  R R+ +FL   + I+  D+R  E    +
Sbjct: 187 VKKSQTGTRVRFWADFQIFPSTEGFSWENLLARARQTAFLVPGLTINCYDERGEEELHES 246

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----------------------RDNISID 260
             + GG+  F ++        +     I G                            +D
Sbjct: 247 FRFDGGVVDFANW--LATDGPVTDTWHITGEGTYNETVQALDSETGHLRATEVERTCEVD 304

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK---DKRSV 317
           +A+RW  GY  +V  F N I    GGTH++G   A+ + + + ++K+    K        
Sbjct: 305 IALRWGIGYDTSVQSFVNIIATPKGGTHVTGFEQAVLKTLRAAIDKNARKLKVGAKDGRP 364

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
             DD + G T+V++++ P+P+F  QTKE L + ++R+VV   V+D L A       + K 
Sbjct: 365 EKDDVQAGMTAVITVRFPEPQFEGQTKETLGTPQIRTVVNRVVSDWLKAKFASSKRDDKQ 424

Query: 378 ----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
               +++KV+     R +AR  ++++R+K  L+ +SLP KLADC   D +++ELF+VEGD
Sbjct: 425 QTSLLMEKVVGEMKARVSARLHKEISRKKNALETSSLPAKLADCRLEDVEETELFIVEGD 484

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SA G+AK  R+   QA+ P+RGKILNV++A    ML++ E   +I  +G G G+  FD++
Sbjct: 485 SALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRT-FDLS 543

Query: 494 KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYV 553
           + RY K+I+MTDADVDGAHIRTLLLT FFR M  ++  G +Y   PPL+ I      +  
Sbjct: 544 QARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGKGRKK 603

Query: 554 KDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
           ++      +  +++ L+         K  I +      +D     +  +   + +  +  
Sbjct: 604 REYIYTYSEDELHRKLAALRRSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSLRRIT 663

Query: 613 I 613
           +
Sbjct: 664 L 664



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 13/187 (6%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +     ++   ++ AN +  I   S +++  S      ++      V    +    
Sbjct: 508 ILNVQKASTADMLANAECANIIQVIGAGSGRTFDLSQARYGKVILMTDADVDGAHIRTLL 567

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSL------ICNGDKIKITGPCSLLDTIFSIGRKGI 734
               F      + + RI      +  +          + I       L   + ++ R G 
Sbjct: 568 LTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGKGRKKREYIYTYSEDELHRKLAALRRSGR 627

Query: 735 S----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEP 787
           +    +QRYKGLGEM+A QL ETT++   RSL R+ + D      A+D+F  LMG  V P
Sbjct: 628 TWKEPIQRYKGLGEMDADQLAETTMDRAHRSLRRITLADEEALRQAEDVFELLMGSTVGP 687

Query: 788 RREFIQE 794
           R+EFI E
Sbjct: 688 RKEFIVE 694


>gi|320195188|gb|EFW69817.1| Topoisomerase IV subunit B [Escherichia coli WV_060327]
          Length = 630

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+IS  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEISFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|294634295|ref|ZP_06712836.1| DNA topoisomerase IV, B subunit [Edwardsiella tarda ATCC 23685]
 gi|291092288|gb|EFE24849.1| DNA topoisomerase IV, B subunit [Edwardsiella tarda ATCC 23685]
          Length = 631

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/585 (38%), Positives = 321/585 (54%), Gaps = 12/585 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN+IDE+L G+A  +
Sbjct: 1   MTQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSIDEALAGHATRV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHPDQSLEVIDDGRGMPVDIHPEEGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G IY+++F NG     L VTG+ G  +TGT V F P +  F 
Sbjct: 117 ISVVNALSHRVEVSVRRDGQIYQIAFENGEKVEELHVTGTVGRRNTGTSVHFWPDAQFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I   D  +   +              S       P 
Sbjct: 177 SARFSVSRLSHLLKAKAVLCPGVEILFRDLVNGSEQRWCYQDGLTDYLMESVNGLVTLPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                      + +     +   +G       + N IP + GGTH++GLR  L   +  +
Sbjct: 237 QPFTGTFATESEAVDW-ALLWLPEGGELLTESYVNLIPTQQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEFRNLLPRG-VKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  ++++       RA     RK +    +LPGKLADCS +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAINSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCSAQDLA 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY 
Sbjct: 470 GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVQAGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  GK + Y   EE     L      +        KG+   N L+
Sbjct: 530 IDLGKEVFYALSEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQ 574



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 4/77 (5%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLMGDE-VE 786
           +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D    +   +   L+  +  E
Sbjct: 555 KKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTIDDEEMERTVAVMDMLLAKKRSE 614

Query: 787 PRREFIQENSLPSALDI 803
            RR ++QEN   + LD+
Sbjct: 615 DRRNWLQENGNLAELDV 631


>gi|58582592|ref|YP_201608.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427186|gb|AAW76223.1| topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 673

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/588 (38%), Positives = 320/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 46  NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQIEV 101

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKFN ++Y  SGGLHGVGVS
Sbjct: 102 TLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS 161

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F      F   
Sbjct: 162 VVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 221

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L  
Sbjct: 222 KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAEHEMLPA 279

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 280 DLFVGSLKKDTEIVDWAAGWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 339

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 340 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 398

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 399 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 455

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 456 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 515

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 516 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 573

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 574 VGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRE 621



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 590 LLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRLLMDML 649


>gi|84624476|ref|YP_451848.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188575893|ref|YP_001912822.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84368416|dbj|BAE69574.1| topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520345|gb|ACD58290.1| DNA topoisomerase IV, B subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 629

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/588 (38%), Positives = 320/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKFN ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F      F   
Sbjct: 118 VVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L  
Sbjct: 178 KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAEHEMLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 DLFVGSLKKDTEIVDWAAGWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRE 577



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 546 LLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRLLMDML 605


>gi|126175769|ref|YP_001051918.1| DNA topoisomerase IV subunit B [Shewanella baltica OS155]
 gi|160873940|ref|YP_001553256.1| DNA topoisomerase IV subunit B [Shewanella baltica OS195]
 gi|217972001|ref|YP_002356752.1| DNA topoisomerase IV subunit B [Shewanella baltica OS223]
 gi|304411164|ref|ZP_07392779.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS183]
 gi|307306459|ref|ZP_07586202.1| DNA topoisomerase IV, B subunit [Shewanella baltica BA175]
 gi|125998974|gb|ABN63049.1| DNA topoisomerase IV subunit B [Shewanella baltica OS155]
 gi|160859462|gb|ABX47996.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS195]
 gi|217497136|gb|ACK45329.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS223]
 gi|304350357|gb|EFM14760.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS183]
 gi|306910750|gb|EFN41178.1| DNA topoisomerase IV, B subunit [Shewanella baltica BA175]
 gi|315266172|gb|ADT93025.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS678]
          Length = 628

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/633 (35%), Positives = 328/633 (51%), Gaps = 15/633 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHTDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y+++F NG     L  TG+ G  +TGT V F P +  F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELRPTGTCGRRNTGTRVHFWPDASYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + LR  + L   ++I   +K++ E  E     + G+  ++         L  
Sbjct: 178 NFSNSKLIYLLRAKAVLCPGLRIKFTNKQTNEVHEWFY--ESGLTDYLKAAIGDNLRLPD 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P          + D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFVGCFKGQLEAADWAITWLPEGGESIGESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +    +LS+KM +P+F+ QTKEKL S +  + V   V D  
Sbjct: 296 EFRN-LIPRGIKLSPEDIWDRAAFILSVKMQEPQFAGQTKEKLSSRQCAAFVSGVVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +   A+ + +  ++ +  R  A        RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNSNTELAESLAEMCINNAQSRLKAA---KKVARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              DS DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +YI  PPL+ I
Sbjct: 472 P--DSSDISELRYGKICILADADSDGLHIATLLCALFLKHYRILVEQGHVYIAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE      L   +   +      ++           + +   +D   +  
Sbjct: 530 DIGKEVYYALDEAERAGILDRIAAENKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                    E   +  +   +       +    
Sbjct: 589 VQLTIDDIEETDALMDMLLAKKRSPDRKNWLED 621



 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I D  + D L   L
Sbjct: 547 ILDRIAAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDIEETDALMDML 606

Query: 781 MGDEVEP-RREFIQE 794
           +  +  P R+ ++++
Sbjct: 607 LAKKRSPDRKNWLED 621


>gi|260599300|ref|YP_003211871.1| DNA topoisomerase IV subunit B [Cronobacter turicensis z3032]
 gi|260218477|emb|CBA33631.1| DNA topoisomerase 4 subunit B [Cronobacter turicensis z3032]
          Length = 630

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/585 (37%), Positives = 322/585 (55%), Gaps = 16/585 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             SY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQSYNADAIEVLTGLEPVRRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHARRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ +KR+G IY ++F NG     L V G+     TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVKRDGQIYNIAFENGEKVKELSVVGTCPKRQTGTSVHFWPDEKFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +        G+  ++         L +
Sbjct: 178 RFSVSRLTHLLKAKAVLCPGVEINFKDQVNNTEQRWCYL--DGLNDYLCEAVNGLITLPE 235

Query: 246 SPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            P      G  + +     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 236 KPFIGNFSGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  +D  E    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 295 CEYRNILPRG-VKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 354 FSLWLNQNVQAAEQLAELAIASAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLN 410

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 468

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F +   SL+  G +Y+  PPLY 
Sbjct: 469 GIDPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFVKHFRSLVKGGHVYVAMPPLYR 528

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  GK + Y  DEE     L      +        KG+   N ++
Sbjct: 529 IDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 100/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   +++        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQAAEQLAELAIASAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   ++     +  G
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFVKHFRSLVKG 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQAD--DLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I+D   A    +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTISDDDDARTLAVMDMLLAKKRSEDRRNWLQE 621


>gi|74313568|ref|YP_311987.1| DNA topoisomerase IV subunit B [Shigella sonnei Ss046]
 gi|73857045|gb|AAZ89752.1| DNA topoisomerase IV subunit B [Shigella sonnei Ss046]
          Length = 630

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  +S D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPNSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 104/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++ +S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPNSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|238650411|ref|YP_002916263.1| DNA topoisomerase IV subunit B [Rickettsia peacockii str. Rustic]
 gi|238624509|gb|ACR47215.1| DNA topoisomerase IV subunit B [Rickettsia peacockii str. Rustic]
          Length = 662

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/656 (33%), Positives = 353/656 (53%), Gaps = 15/656 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + +++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE++ G+A 
Sbjct: 13  NKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDS-NAMHHLVSEVLDNAMDEAVAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           IIT+ ++ D S T+ DNGRGIP D H +    SA EVI+T LH+GGKF+   Y  +GGLH
Sbjct: 72  IITIKMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L++++ ++G +Y  S+  G     L+   ++    GT + F P  +I
Sbjct: 132 GVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTPDPEI 191

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLD 237
           F     FN   +    R  ++L   V I  + +   +        + +  G++ ++S   
Sbjct: 192 FSEKLHFNPKKIYELARSKAYLYRGVTIEWVCEVEVQSDIPKKALISFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRS 294
                ++       I+ + D I ++ A+ W +      V  + N +P   GGTH  GL+S
Sbjct: 252 TLDNLVIPEIFAGNIESTPDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGTHEQGLKS 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS+ V  
Sbjct: 312 AILRGLKAYGEMIGNKKAA--NLTIEDILETTSVVLSIFIAEPSFQGQTKEKLVSNGVSK 369

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ + D    +L      A  +++ V+  +  R + +  ++   RK       LPGKL
Sbjct: 370 PVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKN-ISRKNATQKLRLPGKL 428

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 429 ADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAI 488

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G L
Sbjct: 489 QDLEIALACGSLKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHL 547

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ KPPLY +T+     Y  DEE           + + ++       +    +   + + 
Sbjct: 548 YLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGL-GEMMPAQLKE- 605

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +    +       + F     I      +  ++    +  +   +++ I  + +
Sbjct: 606 TTMHPEKRSLLKVTLEDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELD 661



 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K++       + ++      V    +      F F    K +    +      +  L  +
Sbjct: 501 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQS 560

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L D +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V +
Sbjct: 561 NKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTL 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            D    D +   LMG + E R +FI E +L       S LDI
Sbjct: 621 EDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELDI 662


>gi|254427031|ref|ZP_05040738.1| DNA topoisomerase IV, B subunit [Alcanivorax sp. DG881]
 gi|196193200|gb|EDX88159.1| DNA topoisomerase IV, B subunit [Alcanivorax sp. DG881]
          Length = 628

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 214/555 (38%), Positives = 316/555 (56%), Gaps = 14/555 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y +++I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I VT
Sbjct: 3   NNYTSENIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHAKSIKVT 58

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DG   V D+GRG+P D+H  +     EVI++ LH+GGKF+  +Y+ SGGLHGVGVSV
Sbjct: 59  LLKDGGVEVEDDGRGMPVDMHPVQKKPGVEVILSTLHSGGKFSNNNYQFSGGLHGVGVSV 118

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L++ +KR+G ++ M F +G   + L V  +    +TGT + F P +  F    
Sbjct: 119 VNALSTKLEILVKRDGQLHRMEFGDGEKRSDLEVIDTVGKRNTGTILRFWPDAKYFDSPK 178

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            +   L+H LR  + L   + ++L ++ + E          G+  ++    R  + + Q 
Sbjct: 179 MSVTRLKHLLRAKAVLCPGLLVTLDNQLTGESDAWQF--DDGLIEYLLESSRGWERVPQE 236

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     S +  ++D A+ W  +G       + N IP   GGTH++GLRS L   +  + E
Sbjct: 237 PFNGAMSAETEAVDWAVTWLPEGGELIQEAYVNLIPTAQGGTHVNGLRSGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 FRNLLPRG-VKLTPEDIWDRAAFVLSVKMQDPQFAGQTKERLSSRQTAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  EA+ +    ++ +       RA     RK V    +LPGKLADC+  DP +S
Sbjct: 356 LWLNQHTDEAEKLADLCINNAQ---KRLRAAKKVTRKKVTSGPALPGKLADCTSDDPSQS 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+FLVEGDSAGGSAKQ R R  QAI+PLRGKI+N      +++L SQEI  +  A+  GI
Sbjct: 413 EIFLVEGDSAGGSAKQARDRVYQAIMPLRGKIMNTWEVDSNEVLGSQEIHDI--AVALGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
              S D+  LRY K+ I+ DAD DG HI TL+   F R  P+L+ +G +++  PPLY I 
Sbjct: 471 EPGSDDLGSLRYGKVCILADADSDGLHIATLICALFLRHFPALVKHGHVFVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLE 560
            GK + Y  D+E  +
Sbjct: 531 VGKEVYYALDKEERD 545



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLR--VKITDASQADDLFS 778
           +LD I +  ++G +++ R+KGLGEMN  QL ETT+  DTR L+R  V   D      L  
Sbjct: 547 VLDRIKAEKKRGKVNVTRFKGLGEMNPLQLRETTMARDTRRLVRLDVSTDD--GTHQLMD 604

Query: 779 RL 780
            L
Sbjct: 605 ML 606


>gi|15833172|ref|NP_311945.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           Sakai]
 gi|168747459|ref|ZP_02772481.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754001|ref|ZP_02779008.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760192|ref|ZP_02785199.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767054|ref|ZP_02792061.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773312|ref|ZP_02798319.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781907|ref|ZP_02806914.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785905|ref|ZP_02810912.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168797623|ref|ZP_02822630.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|195937177|ref|ZP_03082559.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807253|ref|ZP_03249590.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208811986|ref|ZP_03253315.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820772|ref|ZP_03261092.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399667|ref|YP_002272509.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327420|ref|ZP_03443503.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794987|ref|YP_003079824.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228047|ref|ZP_05942328.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254903|ref|ZP_05947436.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284413|ref|YP_003501231.1| DNA topoisomerase IV, B subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|13363391|dbj|BAB37341.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           Sakai]
 gi|187770751|gb|EDU34595.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017779|gb|EDU55901.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000532|gb|EDU69518.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358750|gb|EDU77169.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363670|gb|EDU82089.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369291|gb|EDU87707.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373910|gb|EDU92326.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379786|gb|EDU98202.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208727054|gb|EDZ76655.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733263|gb|EDZ81950.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740895|gb|EDZ88577.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161067|gb|ACI38500.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209759538|gb|ACI78081.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759540|gb|ACI78082.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759542|gb|ACI78083.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759544|gb|ACI78084.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759546|gb|ACI78085.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|217319787|gb|EEC28212.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594387|gb|ACT73748.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str.
           TW14359]
 gi|290764286|gb|ADD58247.1| DNA topoisomerase IV, B subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189386|gb|EFW64045.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. EC1212]
 gi|320640109|gb|EFX09681.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           G5101]
 gi|320645406|gb|EFX14415.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H- str.
           493-89]
 gi|320650718|gb|EFX19175.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H- str. H
           2687]
 gi|320656412|gb|EFX24319.1| DNA topoisomerase IV subunit B [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661785|gb|EFX29193.1| DNA topoisomerase IV subunit B [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666937|gb|EFX33913.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337739|gb|EGD61573.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. 1125]
 gi|326347303|gb|EGD71028.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. 1044]
          Length = 630

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|19909667|dbj|BAB87029.1| DNA gyrase subunit B [bacterium PC4]
          Length = 477

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 279/479 (58%), Positives = 356/479 (74%), Gaps = 17/479 (3%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM++EV DNAIDE+L G+ D++ + LN DGS +V DNGRGIP D+HKEEG+
Sbjct: 1   DTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVDMHKEEGV 60

Query: 94  SAAEVIMTRLHAGGKF----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           SAAEVIMT+LHAGGKF    +  +YKVSGGLHGVGVSVVNALS WL+L I R+G ++EM 
Sbjct: 61  SAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSQWLELTIWRDGKVHEMR 120

Query: 150 FINGILDNPLVVTGSAG----------NDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRE 198
           F +G     L V G A              GT VTF+PS D F    +F+++ L+HR RE
Sbjct: 121 FEDGEAVKSLEVIGDAPKVEQNPDDNGFKKGTRVTFMPSHDTFKNVTEFDFEKLEHRYRE 180

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           L+FLNS V+I L D R  E  E  +FY+GGI AFV YLDR+K+PL+  PI +   +D I 
Sbjct: 181 LAFLNSGVRILLRDNRPEEALEHDLFYEGGIAAFVKYLDRNKQPLISEPISVSAEKDGIG 240

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           ID+A+ WND Y+ENVLCFTNNIPQ+DGGTHL+  RSALTR + +Y   +   KK+K S+ 
Sbjct: 241 IDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAFRSALTRTLNAYANSAGLLKKEKVSLS 300

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           G+D REG T+++S+K+PDP+F SQTK+KLVSSEVR  +ES + + ++ WLEE+P +AK I
Sbjct: 301 GEDMREGLTAIVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMTEWLEENPADAKAI 360

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++K++DA      A R      RKG + +ASLPGKLADC +R+P  SELFLVEGDSAGGS
Sbjct: 361 IQKIIDA-AAAREAARRAREMSRKGAMSVASLPGKLADCQDRNPANSELFLVEGDSAGGS 419

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           AKQGR R+ QAILPL+GKILNVERARFD+++SS+E+GTLI A+GTG+ +D FD+ KLRY
Sbjct: 420 AKQGRDRKTQAILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGL-RDEFDLEKLRY 477


>gi|16130926|ref|NP_417502.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82545287|ref|YP_409234.1| DNA topoisomerase IV subunit B [Shigella boydii Sb227]
 gi|89109800|ref|AP_003580.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           W3110]
 gi|157159021|ref|YP_001464491.1| DNA topoisomerase IV subunit B [Escherichia coli E24377A]
 gi|157162506|ref|YP_001459824.1| DNA topoisomerase IV subunit B [Escherichia coli HS]
 gi|170018716|ref|YP_001723670.1| DNA topoisomerase IV subunit B [Escherichia coli ATCC 8739]
 gi|170082573|ref|YP_001731893.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188493014|ref|ZP_03000284.1| DNA topoisomerase IV, B subunit [Escherichia coli 53638]
 gi|191167538|ref|ZP_03029350.1| DNA topoisomerase IV, B subunit [Escherichia coli B7A]
 gi|193062072|ref|ZP_03043168.1| DNA topoisomerase IV, B subunit [Escherichia coli E22]
 gi|193067388|ref|ZP_03048356.1| DNA topoisomerase IV, B subunit [Escherichia coli E110019]
 gi|194436719|ref|ZP_03068819.1| DNA topoisomerase IV, B subunit [Escherichia coli 101-1]
 gi|209920502|ref|YP_002294586.1| DNA topoisomerase IV subunit B [Escherichia coli SE11]
 gi|218555600|ref|YP_002388513.1| DNA topoisomerase IV subunit B [Escherichia coli IAI1]
 gi|218696736|ref|YP_002404403.1| DNA topoisomerase IV subunit B [Escherichia coli 55989]
 gi|218701804|ref|YP_002409433.1| DNA topoisomerase IV subunit B [Escherichia coli IAI39]
 gi|218706657|ref|YP_002414176.1| DNA topoisomerase IV subunit B [Escherichia coli UMN026]
 gi|238902143|ref|YP_002927939.1| DNA topoisomerase IV, subunit B [Escherichia coli BW2952]
 gi|253772132|ref|YP_003034963.1| DNA topoisomerase IV subunit B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162979|ref|YP_003046087.1| DNA topoisomerase IV subunit B [Escherichia coli B str. REL606]
 gi|256019052|ref|ZP_05432917.1| DNA topoisomerase IV subunit B [Shigella sp. D9]
 gi|256024388|ref|ZP_05438253.1| DNA topoisomerase IV subunit B [Escherichia sp. 4_1_40B]
 gi|260845784|ref|YP_003223562.1| DNA topoisomerase IV subunit B [Escherichia coli O103:H2 str.
           12009]
 gi|260857163|ref|YP_003231054.1| DNA topoisomerase IV subunit B [Escherichia coli O26:H11 str.
           11368]
 gi|260869784|ref|YP_003236186.1| DNA topoisomerase IV subunit B [Escherichia coli O111:H- str.
           11128]
 gi|293406645|ref|ZP_06650571.1| DNA topoisomerase IV subunit B [Escherichia coli FVEC1412]
 gi|293416475|ref|ZP_06659114.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|293449370|ref|ZP_06663791.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|298382385|ref|ZP_06991982.1| DNA topoisomerase 4 subunit B [Escherichia coli FVEC1302]
 gi|300821623|ref|ZP_07101769.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 119-7]
 gi|300901410|ref|ZP_07119496.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 198-1]
 gi|300905833|ref|ZP_07123566.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 84-1]
 gi|300916859|ref|ZP_07133562.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 115-1]
 gi|300923689|ref|ZP_07139716.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 182-1]
 gi|300931916|ref|ZP_07147213.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 187-1]
 gi|300950762|ref|ZP_07164649.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 116-1]
 gi|300958414|ref|ZP_07170554.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 175-1]
 gi|301020021|ref|ZP_07184153.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 196-1]
 gi|301021821|ref|ZP_07185784.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 69-1]
 gi|301301931|ref|ZP_07208065.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 124-1]
 gi|301643601|ref|ZP_07243642.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 146-1]
 gi|307139719|ref|ZP_07499075.1| DNA topoisomerase IV subunit B [Escherichia coli H736]
 gi|307310343|ref|ZP_07589991.1| DNA topoisomerase IV, B subunit [Escherichia coli W]
 gi|312972707|ref|ZP_07786880.1| DNA topoisomerase IV, B subunit [Escherichia coli 1827-70]
 gi|331643730|ref|ZP_08344861.1| DNA topoisomerase IV, B subunit [Escherichia coli H736]
 gi|331654635|ref|ZP_08355635.1| DNA topoisomerase IV, B subunit [Escherichia coli M718]
 gi|331664646|ref|ZP_08365552.1| DNA topoisomerase IV, B subunit [Escherichia coli TA143]
 gi|331669944|ref|ZP_08370789.1| DNA topoisomerase IV, B subunit [Escherichia coli TA271]
 gi|331679108|ref|ZP_08379780.1| DNA topoisomerase IV, B subunit [Escherichia coli H591]
 gi|331684685|ref|ZP_08385277.1| DNA topoisomerase IV, B subunit [Escherichia coli H299]
 gi|332280153|ref|ZP_08392566.1| DNA topoisomerase IV subunit B [Shigella sp. D9]
 gi|464346|sp|P20083|PARE_ECOLI RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|882560|gb|AAA69198.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789408|gb|AAC76066.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           MG1655]
 gi|81246698|gb|ABB67406.1| DNA topoisomerase IV subunit B [Shigella boydii Sb227]
 gi|85675833|dbj|BAE77086.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K12 substr.
           W3110]
 gi|157068186|gb|ABV07441.1| DNA topoisomerase IV, B subunit [Escherichia coli HS]
 gi|157081051|gb|ABV20759.1| DNA topoisomerase IV, B subunit [Escherichia coli E24377A]
 gi|169753644|gb|ACA76343.1| DNA topoisomerase IV, B subunit [Escherichia coli ATCC 8739]
 gi|169890408|gb|ACB04115.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188488213|gb|EDU63316.1| DNA topoisomerase IV, B subunit [Escherichia coli 53638]
 gi|190902395|gb|EDV62132.1| DNA topoisomerase IV, B subunit [Escherichia coli B7A]
 gi|192932292|gb|EDV84890.1| DNA topoisomerase IV, B subunit [Escherichia coli E22]
 gi|192959345|gb|EDV89780.1| DNA topoisomerase IV, B subunit [Escherichia coli E110019]
 gi|194424201|gb|EDX40188.1| DNA topoisomerase IV, B subunit [Escherichia coli 101-1]
 gi|209913761|dbj|BAG78835.1| DNA topoisomerase IV subunit B [Escherichia coli SE11]
 gi|218353468|emb|CAU99567.1| DNA topoisomerase IV, subunit B [Escherichia coli 55989]
 gi|218362368|emb|CAQ99992.1| DNA topoisomerase IV, subunit B [Escherichia coli IAI1]
 gi|218371790|emb|CAR19643.1| DNA topoisomerase IV, subunit B [Escherichia coli IAI39]
 gi|218433754|emb|CAR14671.1| DNA topoisomerase IV, subunit B [Escherichia coli UMN026]
 gi|238860847|gb|ACR62845.1| DNA topoisomerase IV, subunit B [Escherichia coli BW2952]
 gi|242378582|emb|CAQ33369.1| topoisomerase IV subunit B, subunit of topoisomerase IV
           [Escherichia coli BL21(DE3)]
 gi|253323176|gb|ACT27778.1| DNA topoisomerase IV, B subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974880|gb|ACT40551.1| DNA topoisomerase IV subunit B [Escherichia coli B str. REL606]
 gi|253979036|gb|ACT44706.1| DNA topoisomerase IV subunit B [Escherichia coli BL21(DE3)]
 gi|257755812|dbj|BAI27314.1| DNA topoisomerase IV subunit B [Escherichia coli O26:H11 str.
           11368]
 gi|257760931|dbj|BAI32428.1| DNA topoisomerase IV subunit B [Escherichia coli O103:H2 str.
           12009]
 gi|257766140|dbj|BAI37635.1| DNA topoisomerase IV subunit B [Escherichia coli O111:H- str.
           11128]
 gi|260447934|gb|ACX38356.1| DNA topoisomerase IV, B subunit [Escherichia coli DH1]
 gi|291322460|gb|EFE61889.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|291426651|gb|EFE99683.1| DNA topoisomerase IV subunit B [Escherichia coli FVEC1412]
 gi|291431831|gb|EFF04814.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|298277525|gb|EFI19041.1| DNA topoisomerase 4 subunit B [Escherichia coli FVEC1302]
 gi|299881978|gb|EFI90189.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 196-1]
 gi|300314923|gb|EFJ64707.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 175-1]
 gi|300355182|gb|EFJ71052.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 198-1]
 gi|300397837|gb|EFJ81375.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 69-1]
 gi|300402302|gb|EFJ85840.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 84-1]
 gi|300415829|gb|EFJ99139.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 115-1]
 gi|300420056|gb|EFK03367.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 182-1]
 gi|300449932|gb|EFK13552.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 116-1]
 gi|300460339|gb|EFK23832.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 187-1]
 gi|300525761|gb|EFK46830.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 119-7]
 gi|300842912|gb|EFK70672.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 124-1]
 gi|301077985|gb|EFK92791.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 146-1]
 gi|306909238|gb|EFN39733.1| DNA topoisomerase IV, B subunit [Escherichia coli W]
 gi|309703462|emb|CBJ02802.1| putative DNA topoisomerase 4 subunit B [Escherichia coli ETEC
           H10407]
 gi|310332649|gb|EFP99862.1| DNA topoisomerase IV, B subunit [Escherichia coli 1827-70]
 gi|315062340|gb|ADT76667.1| DNA topoisomerase IV, subunit B [Escherichia coli W]
 gi|315137623|dbj|BAJ44782.1| DNA topoisomerase IV subunit B [Escherichia coli DH1]
 gi|315256940|gb|EFU36908.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 85-1]
 gi|315617300|gb|EFU97908.1| DNA topoisomerase IV, B subunit [Escherichia coli 3431]
 gi|320201942|gb|EFW76517.1| Topoisomerase IV subunit B [Escherichia coli EC4100B]
 gi|323154726|gb|EFZ40925.1| DNA topoisomerase IV, B subunit [Escherichia coli EPECa14]
 gi|323168127|gb|EFZ53814.1| DNA topoisomerase IV, B subunit [Shigella sonnei 53G]
 gi|323173726|gb|EFZ59355.1| DNA topoisomerase IV, B subunit [Escherichia coli LT-68]
 gi|323178735|gb|EFZ64311.1| DNA topoisomerase IV, B subunit [Escherichia coli 1180]
 gi|323188530|gb|EFZ73815.1| DNA topoisomerase IV, B subunit [Escherichia coli RN587/1]
 gi|323377073|gb|ADX49341.1| DNA topoisomerase IV, B subunit [Escherichia coli KO11]
 gi|323935968|gb|EGB32263.1| DNA topoisomerase IV [Escherichia coli E1520]
 gi|323941871|gb|EGB38050.1| DNA topoisomerase IV [Escherichia coli E482]
 gi|323946728|gb|EGB42748.1| DNA topoisomerase IV [Escherichia coli H120]
 gi|323960923|gb|EGB56542.1| DNA topoisomerase IV [Escherichia coli H489]
 gi|323971845|gb|EGB67070.1| DNA topoisomerase IV [Escherichia coli TA007]
 gi|324018128|gb|EGB87347.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 117-3]
 gi|324119640|gb|EGC13521.1| DNA topoisomerase IV [Escherichia coli E1167]
 gi|331037201|gb|EGI09425.1| DNA topoisomerase IV, B subunit [Escherichia coli H736]
 gi|331048017|gb|EGI20094.1| DNA topoisomerase IV, B subunit [Escherichia coli M718]
 gi|331058577|gb|EGI30558.1| DNA topoisomerase IV, B subunit [Escherichia coli TA143]
 gi|331062857|gb|EGI34771.1| DNA topoisomerase IV, B subunit [Escherichia coli TA271]
 gi|331073173|gb|EGI44496.1| DNA topoisomerase IV, B subunit [Escherichia coli H591]
 gi|331078300|gb|EGI49506.1| DNA topoisomerase IV, B subunit [Escherichia coli H299]
 gi|332102505|gb|EGJ05851.1| DNA topoisomerase IV subunit B [Shigella sp. D9]
 gi|332344985|gb|AEE58319.1| DNA topoisomerase IV, B subunit ParE [Escherichia coli UMNK88]
 gi|332998720|gb|EGK18316.1| DNA topoisomerase IV, B subunit [Shigella flexneri VA-6]
          Length = 630

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|324005383|gb|EGB74602.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 57-2]
          Length = 630

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGETVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|304312518|ref|YP_003812116.1| Gram negative topoisomerase IV, subunit B [gamma proteobacterium
           HdN1]
 gi|301798251|emb|CBL46473.1| Gram negative topoisomerase IV, subunit B [gamma proteobacterium
           HdN1]
          Length = 629

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/558 (39%), Positives = 317/558 (56%), Gaps = 14/558 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++Y+A+SI++L GLD V++RP MY   TD     +H+  EV+DN++DE+L G+A+ +
Sbjct: 1   MSANTYNAESIEVLSGLDPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHANTV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           +V L+ DGS  +SDNGRG+P D+H E+G    EVI+  LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  SVILHPDGSMEISDNGRGMPVDIHPEQGRPGVEVILCTLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSVVNALSS L++ +KR+G ++ M F  G   + L V G+    DTGT + FLP    F 
Sbjct: 117 VSVVNALSSVLEVTVKRDGKVHRMGFKGGEKASELEVVGNCAKRDTGTTIRFLPDPSYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F    L H LR  + L   ++++  D  + E +E     + G+  ++         L
Sbjct: 177 TPKFLVSKLLHLLRAKAVLCPRLRVTFKDAGTGEEQEWYY--ENGLRDYLMSSHVDTPLL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     S ++   D A+ W  +G       + N IP   GGTH++G RS LT  +  
Sbjct: 235 PADPFVGSVSGESEVADWAVSWLPEGGDLVAESYVNLIPTLQGGTHVNGFRSGLTDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y E      +    +  +D  +  + VLS+KM DP+F+ Q KE+L S ++ + V   V D
Sbjct: 295 YCEFRNLMPRG-VKLSPEDLWDQASYVLSVKMQDPQFAGQIKERLSSRQIAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++  E   + +  ++ +   +   RA     RK V    +LPGKLADC+ +D 
Sbjct: 354 AFSLWLSQNTQEGDALAELAINNA---NRRMRAAKKVARKKVTAGPALPGKLADCTSQDS 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           +  ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN       ++L+SQE+  +  A+G
Sbjct: 411 ENGELFLVEGDSAGGSAKQARDREYQAVMPLRGKILNTWEVDSSEILASQEVHDIAVAIG 470

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
                   D+  LRY+KI I+ DAD DGAHI TLL   F R    ++  G +YI  PPLY
Sbjct: 471 VDPASS--DLENLRYNKICILADADSDGAHIATLLCALFLRHFRPVVDAGHIYIAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLE 560
            I  GK + Y  DE   +
Sbjct: 529 RIDIGKEVFYALDEGEKQ 546



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 8/98 (8%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +  G+K  +      LD I +  ++G I + R+KGLGEMN  QL ETT+  
Sbjct: 531 DIGKEVFYALDEGEKQGV------LDRIKAEKKRGQIQVTRFKGLGEMNPIQLRETTMAR 584

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQE 794
           DTR L+++ + DA    DL   L+  +    RR ++++
Sbjct: 585 DTRRLVQLTVEDAESTCDLVDLLLAKKRSSDRRAWLED 622


>gi|300937487|ref|ZP_07152312.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 21-1]
 gi|331674577|ref|ZP_08375337.1| DNA topoisomerase IV, B subunit [Escherichia coli TA280]
 gi|300457479|gb|EFK20972.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 21-1]
 gi|331068671|gb|EGI40066.1| DNA topoisomerase IV, B subunit [Escherichia coli TA280]
          Length = 630

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/648 (34%), Positives = 343/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 TLWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFTLWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|78484709|ref|YP_390634.1| DNA topoisomerase IV subunit B [Thiomicrospira crunogena XCL-2]
 gi|78362995|gb|ABB40960.1| DNA topoisomerase IV subunit B [Thiomicrospira crunogena XCL-2]
          Length = 628

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/595 (37%), Positives = 331/595 (55%), Gaps = 23/595 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     Y+A  I++L GLD V+KRP MY   TD     +H+  EV+DN++DE++ G+
Sbjct: 1   MSEN-----YNASEIEVLTGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEAIAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VT   DGS  V D+GRG+P D+H E+G+   EVI+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKIIVTHFADGSIAVEDDGRGMPVDIHPEQGMPGVEVILTKLHAGGKFSNKAYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS  ++++IKR+G +++++F  G++  PL V G     +TGT + F P +
Sbjct: 112 HGVGISVVNALSKRVEIQIKRDGKVHQIAFEQGLVVEPLEVIGKVGKKNTGTTLRFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    +    L+H LR  + L+  + ++ ID+ S E  E     + G+  +++     
Sbjct: 172 RFFDTPKYALTKLKHLLRAKAVLSPGLHVTFIDEVSNETSEWQY--EDGLRDYLNQALDG 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGGTHLSGLRSALTR 298
              +       + + +N  +  A+ W     + VL  + N IP   GGTH++GLR+  T 
Sbjct: 230 VDRVPVEGFVGETNGENEGVAWAIAWLAEPADTVLESYVNLIPTPLGGTHVNGLRAGATD 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  + E      +    V  +D  +    VLS K+ +P+F+ QTKE+L S E    +  
Sbjct: 290 AIREFCEFRNLLPRG-VKVTPEDVWQNVAFVLSAKVREPQFAGQTKERLSSRECVPFISG 348

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D LS WL +H   A+ I + V++ +       +      RK +    +LPGKLADC+
Sbjct: 349 VVKDSLSLWLNQHTDVAEKIAEIVINNAH---NRNKKAKKITRKKITSGPALPGKLADCT 405

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E D  ++ELFLVEGDSAGGSAKQ R +  QAI+PLRGKILN       ++L+S EI  + 
Sbjct: 406 ESDLNRTELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDSSQVLASSEIHDIS 465

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G D  D++ LRY KI I+ DAD DGAHI TL+   F +  P L+ NG +Y+  
Sbjct: 466 VAIGVDPGSD--DLSGLRYGKICILADADSDGAHIATLICALFVKHFPKLVENGHVYVAM 523

Query: 539 PPLYGITRGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           PPLY I  GK L Y  DE       +     +   +         G ++   LR 
Sbjct: 524 PPLYRIDVGKQLFYALDESERAGVLDRIESEKMPGKVQVTRFKGLGEMNPKQLRE 578



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 11/79 (13%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I S    G + + R+KGLGEMN  QL ETT+ P+TR L+++ + D   AD +  +L
Sbjct: 547 VLDRIESEKMPGKVQVTRFKGLGEMNPKQLRETTMMPETRRLIQLGL-DIESADPMMDKL 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++E
Sbjct: 606 LAKKRSGD----RKIWLEE 620


>gi|30064380|ref|NP_838551.1| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 2457T]
 gi|56480243|ref|NP_708841.2| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 301]
 gi|30042637|gb|AAP18361.1| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 2457T]
 gi|56383794|gb|AAN44548.2| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 301]
 gi|281602417|gb|ADA75401.1| DNA topoisomerase IV subunit B [Shigella flexneri 2002017]
 gi|313648143|gb|EFS12589.1| DNA topoisomerase IV, B subunit [Shigella flexneri 2a str. 2457T]
 gi|332752701|gb|EGJ83086.1| DNA topoisomerase IV, B subunit [Shigella flexneri K-671]
 gi|332753086|gb|EGJ83470.1| DNA topoisomerase IV, B subunit [Shigella flexneri 4343-70]
 gi|332754298|gb|EGJ84664.1| DNA topoisomerase IV, B subunit [Shigella flexneri 2747-71]
 gi|333000363|gb|EGK19946.1| DNA topoisomerase IV, B subunit [Shigella flexneri K-218]
 gi|333014767|gb|EGK34112.1| DNA topoisomerase IV, B subunit [Shigella flexneri K-304]
          Length = 630

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/648 (34%), Positives = 341/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +   +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQGLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 102/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   + 
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQG 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|323978898|gb|EGB73978.1| DNA topoisomerase IV [Escherichia coli TW10509]
          Length = 630

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDEAFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|258620848|ref|ZP_05715882.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM573]
 gi|258626885|ref|ZP_05721689.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM603]
 gi|258580808|gb|EEW05753.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM603]
 gi|258586236|gb|EEW10951.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM573]
          Length = 626

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/590 (37%), Positives = 331/590 (56%), Gaps = 19/590 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L GY
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGY 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKIQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G     L VTG+ G  +TGT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELAVTGTCGRRNTGTSVHFWPDT 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F   +F+   L + LR  + L   ++I   DK      E    Y+ G++ +++   + 
Sbjct: 172 KYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDK--VNNNEHRWLYEDGLKDYLAEGVKG 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P   + +    +   A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 230 YTLLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLD 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    + G+D  +    VLS+KM DP+F+ QTKE+L S +  + V  
Sbjct: 290 AMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVSG 348

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL E P  A+ + +  +  +       RA     RK +    +LPGKL DC+
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKIASGPALPGKLTDCT 405

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  ++ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  + 
Sbjct: 406 VQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI- 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ++  GI  DS ++  LRY K+ I+ DAD DG HI TLL   F R   +L+  G +Y+  
Sbjct: 465 -SVALGIDPDSDNLESLRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAM 523

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           PPLY I  GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 524 PPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQ 573



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMRASKKVVRKKIASGPALPGKLTDCTVQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   +      +   
Sbjct: 457 ASQEVHDISVALGIDPDSDNLESLRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 516

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 577 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRTWLQRN 620


>gi|260775392|ref|ZP_05884289.1| topoisomerase IV subunit B [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608573|gb|EEX34738.1| topoisomerase IV subunit B [Vibrio coralliilyticus ATCC BAA-450]
          Length = 626

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/591 (37%), Positives = 325/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNKGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+  DK +    +       K  +   V    
Sbjct: 172 KYFDSANFSVTRLINNLRAKAVLCPGLEITFSDKVNGNEHKWLYEDGLKDYLAEGVKGYT 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         +    N ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 VLPEEPFTGEFSAETEAANWAV---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+KM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGDDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+++ +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAELLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS ++  LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLESLRYGKICILADADSDGLHIATLLCALFTRHFKALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDDEKEGVLERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D+    ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSQATMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRSWLQNN 620


>gi|194431743|ref|ZP_03064034.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1012]
 gi|194420099|gb|EDX36177.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1012]
 gi|320180944|gb|EFW55865.1| Topoisomerase IV subunit B [Shigella boydii ATCC 9905]
 gi|332086688|gb|EGI91828.1| DNA topoisomerase IV, B subunit [Shigella boydii 5216-82]
 gi|332087296|gb|EGI92426.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 155-74]
          Length = 630

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 218/584 (37%), Positives = 329/584 (56%), Gaps = 14/584 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
             GK + Y   EE  E  L      +        KG+   N ++
Sbjct: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKANVQRFKGLGEMNPMQ 573



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKANVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|194365224|ref|YP_002027834.1| DNA topoisomerase IV subunit B [Stenotrophomonas maltophilia
           R551-3]
 gi|194348028|gb|ACF51151.1| DNA topoisomerase IV, B subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 629

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/565 (39%), Positives = 319/565 (56%), Gaps = 13/565 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I +
Sbjct: 2   NARYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHARSIEI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGS  VSD+GRG+P D+H EE I   E+I+TRLHAGGKFN  +Y  SGGLHGVGVS
Sbjct: 58  TLFKDGSVEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNNNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +++ IKREG  + ++F NG   +PL V GS    +TGT + F P    F   
Sbjct: 118 VVNALSTLVEIHIKREGAEHRITFRNGDRASPLEVVGSVGKKNTGTRLRFWPDPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H LR  + L   + + L D+ + +    T +Y+ G+  ++      ++ L  
Sbjct: 178 KFAVRALKHLLRAKAVLCPGLTVKLTDEATGDV--DTWYYEDGLRDYLKLELGDRESLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A+ W          + N IP    GTH +GLR+ LT  +  + +
Sbjct: 236 DLFVGNLKKDTEIVDWAVAWLPEGELVQESYVNLIPTAQHGTHANGLRTGLTEALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  + VLS+KM DP+FS QTKE+L S +    VE   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
             L ++    + I +  ++ +  R        L  RK V    +LPGKLADC  +D  ++
Sbjct: 355 LLLNQNVELGEKIAQIAIERASARLKTE---KLVVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      + +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVSSNSVLASEEVHNLAVAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI+ LRY K+II+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ I 
Sbjct: 472 GKD--DISGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDAGHVFVAMPPLFRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSE 570
            GK + Y  DEE     L      +
Sbjct: 530 VGKQVFYALDEEEKRSMLDKIEREK 554



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            S+LD I     KG +++ R+KGLGEMN  QL E+T++PDTR L+++ + D  Q   L  
Sbjct: 544 RSMLDKIEREKIKGAVNVTRFKGLGEMNPPQLRESTIHPDTRRLVQLTVDDREQTSSLMD 603

Query: 779 RL 780
            L
Sbjct: 604 ML 605


>gi|323966559|gb|EGB61992.1| DNA topoisomerase IV [Escherichia coli M863]
 gi|327251816|gb|EGE63502.1| DNA topoisomerase IV, B subunit [Escherichia coli STEC_7v]
          Length = 630

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/648 (34%), Positives = 343/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDEAFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 TLWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFTLWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|67459380|ref|YP_247004.1| DNA topoisomerase IV subunit B [Rickettsia felis URRWXCal2]
 gi|75536199|sp|Q4UKT4|PARE_RICFE RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|67004913|gb|AAY61839.1| DNA topoisomerase IV, B subunit [Rickettsia felis URRWXCal2]
          Length = 662

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/656 (33%), Positives = 347/656 (52%), Gaps = 15/656 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + +++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE++ G+A 
Sbjct: 13  NKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDS-NAMHHLVSEVLDNAMDEAVAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           IIT+ ++ D S T+ DNGRGIP D H +    SA EVI+T LH+GGKF+   Y  +GGLH
Sbjct: 72  IITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L++++ ++G +Y  S+  G     L+   ++    GT + F P  +I
Sbjct: 132 GVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTPDPEI 191

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLD 237
           F     FN   +    R  ++L   V I    +            + +  G++ ++S   
Sbjct: 192 FSEKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVPSDIPKKALINFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRS 294
                ++              I ++ A+ W +  +   +  + N +P   GGTH  GL+S
Sbjct: 252 TLDNLIIPEIFSGNIESTPDEIKLEWAICWQNNDNSAFIQSYCNTVPTPQGGTHEQGLKS 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS+ V  
Sbjct: 312 AILRGLKAYGEMIGNKKAA--NLTIEDILETASVVLSIFIAEPSFQGQTKEKLVSNGVSK 369

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ + D    +L      A  +++ V+  +  R + +  ++   RK       LPGKL
Sbjct: 370 PVENIIKDHFDHFLSSDKALATNLLEHVIAIAEFRISKKNEKN-ISRKNATQKLRLPGKL 428

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+   P  +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 429 ADCTRTTPGGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAI 488

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G L
Sbjct: 489 QDLEIALACGSLKN-YKEENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHL 547

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ KPPLY +T+     Y  DEE      +   LS+  +   +        ++       
Sbjct: 548 YLAKPPLYRLTQSNKTYYAGDEEEKAK--LTDKLSKASKAKIEVGRFKGLGEMMPAQLKE 605

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +    +       + F     I      +  ++    +  +   +++ I  + +
Sbjct: 606 TTMHPEKRSLLKVTLEDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K++       + ++      V    +      F F    K +    +      +  L  +
Sbjct: 501 KNYKEENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQS 560

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L D +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V +
Sbjct: 561 NKTYYAGDEEEKAKLTDKLSKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTL 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            D    D +   LMG + E R +FI E +L       + LDI
Sbjct: 621 EDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELDI 662


>gi|332968173|gb|EGK07254.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Psychrobacter sp.
           1501(2011)]
          Length = 629

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 220/589 (37%), Positives = 318/589 (53%), Gaps = 20/589 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A S+++L+GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I V 
Sbjct: 2   SNYTAQSLEVLEGLEPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKTIKVQ 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V D+GRG+PTD+H E   +  E+I+TRLHAGGKFN  +Y+VSGGLHGVG+SV
Sbjct: 58  LHEDGSLSVEDDGRGMPTDIHPEFNQTGIELILTRLHAGGKFNTSNYQVSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS  +++ + R+G  Y+++F NG     L     S     GT+V F      F    
Sbjct: 118 VNALSKRVEVTVWRDGVQYDIAFENGAPVTKLTESVSSNKRKRGTKVRFWVDESFFDTPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H L+  + L + + I   D+ + +          G+  +++      + L   
Sbjct: 178 FSVKQLKHNLKAKAVLAAGLTIEFYDEANKDKVVWQF--ADGVVEYLNEQLDGLETLPPQ 235

Query: 247 PIRI-----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P         G R  ++  L+    +G H     + N IP   GGTH++GLR+ +   + 
Sbjct: 236 PFYFAYEAKDGERAGVTFALS-WLPEGGHPIQESYVNLIPTAQGGTHVNGLRTGILEALR 294

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + E      ++   + G+D  +G   +LS+K  +P+FS QTKE+L S E    V++   
Sbjct: 295 EFCEIHNLLPRN-VKLTGEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAGAVQAQAK 353

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL +H      I +     S      + A+    RK +    +LPGKLADC    
Sbjct: 354 DAFSLWLNQHADLGAQIAELA--ISKAGKRLKSAKK-VARKKITQGPALPGKLADCRGGV 410

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELFLVEGDSAGGSAKQ R R  QAILPLRGKILN      D +LSS+EI  +  A+
Sbjct: 411 RDGAELFLVEGDSAGGSAKQARDRHFQAILPLRGKILNTWEVSPDTVLSSREIHDIAIAI 470

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G      S D+++LRY KI I+ DAD DG HI TL+   F +  P+L+  G L++  PPL
Sbjct: 471 GVDP--ASDDLSELRYDKICILADADSDGLHIATLICALFVKHFPALVDAGHLFVAMPPL 528

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y I  GK + Y  DE  LE  L     +++         G +S   LR 
Sbjct: 529 YRIDIGKEVHYALDEAELEHILSKVPGNKKPQITRFKGLGEMSAEQLRE 577



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           L+ I S   G K   + R+KGLGEM+A QL ETT++PDTR L+++ + D    + +   L
Sbjct: 546 LEHILSKVPGNKKPQITRFKGLGEMSAEQLRETTMHPDTRKLVQLDMDDMQLTNSVMDML 605


>gi|170728515|ref|YP_001762541.1| DNA topoisomerase IV subunit B [Shewanella woodyi ATCC 51908]
 gi|169813862|gb|ACA88446.1| DNA topoisomerase IV, B subunit [Shewanella woodyi ATCC 51908]
          Length = 631

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/640 (34%), Positives = 338/640 (52%), Gaps = 15/640 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 5   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATKIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEGI   E+I+T+LHAGGKF+  +Y+ SGGLHGVG+S
Sbjct: 61  ILHKDNSLEVIDDGRGMPIDIHPEEGIPGVELILTKLHAGGKFSNDNYQFSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +++ ++R G +Y+M+F +G     L  TG+ G  +TGT V F P+   F   
Sbjct: 121 VVNALSNRVEITVRRNGLVYDMAFEHGDKVEDLTETGTCGRRNTGTRVHFWPTPSYFDSA 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + LR  + L   ++I  ++K++ E  E     + G+  ++    +    L +
Sbjct: 181 NFSIPKLTYLLRAKAVLCPGLKIKFVNKQTDETTEWHY--ESGLTDYLISSVKDSLMLPE 238

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P       +  ++D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 239 DPFVGSMKGNQEAVDWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFRQGLLDSMREFC 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +  + +LS+KM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 299 EFRN-LIPRGIKLTPEDIWDRSSFILSVKMQDPQFAGQTKEKLSSRQSAAFVSGIVRDAF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  H  +A  + +  ++ +  R  + +      RK V    +LPGKL DCS +DP +
Sbjct: 358 SLWLNTHTDQAAALAEMCINNAQKRLKSAKK---VARKKVTSGPALPGKLTDCSGQDPMR 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 415 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              D  DI++LRY KI I+ DAD DG HI TLL   F +    L+ +G +Y+  PPL+ +
Sbjct: 475 P--DCEDISELRYGKICILADADSDGLHIATLLCALFMKHYKVLVEHGHVYVAMPPLFRV 532

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   +  L   +  ++      ++           + +   +D   +  
Sbjct: 533 DVGKEVFYALDEAEKDGILDRITAEKKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 591

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                    +   +  +   +       +      +  +F
Sbjct: 592 VQLTIDDVEDTMAVMDMLLAKKRSGDRKTWLETKGDLADF 631



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I D      +   L
Sbjct: 550 ILDRITAEKKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDVEDTMAVMDML 609

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 610 LAKKRSGD----RKTWLET 624


>gi|167625558|ref|YP_001675852.1| DNA topoisomerase IV subunit B [Shewanella halifaxensis HAW-EB4]
 gi|167355580|gb|ABZ78193.1| DNA topoisomerase IV, B subunit [Shewanella halifaxensis HAW-EB4]
          Length = 631

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/633 (34%), Positives = 333/633 (52%), Gaps = 15/633 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 5   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHASRIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 61  ILHADNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALSS +++ ++R   +YEM+F +G     L VTG+ G  +TGT V F P    F   
Sbjct: 121 VVNALSSRVEITVRRNAEVYEMAFEHGEKVEDLHVTGTCGRRNTGTSVHFWPDPSYFDSG 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + L+  + L   ++I  ++K++ E +E     + G+E ++         L +
Sbjct: 181 NFSISKLTYLLKAKAVLCPGLRIKFVNKQTNETQEWFY--ESGLEDYLKSSINGVPTLPE 238

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + +  + D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 239 VPFVGSFAGNLEAADWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFRQGLLESMREFC 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +  T +LSIKM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 299 EFRNLMPRG-IKLTPEDIWDRSTFILSIKMQDPQFAGQTKEKLSSRQCAAFVSGIVRDAF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +  +A+ +    ++ +       +A     RK +    +LPGKL DCS +DP +
Sbjct: 358 SLWLNTNTEQAEALADMCINNAQ---KRLKAAKKVARKRITSGPALPGKLTDCSGQDPMR 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 415 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
                 DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  PPL+ I
Sbjct: 475 PDSA--DISELRYGKICILADADSDGLHIATLLCALFMKHYRVLVEQGHIYVAMPPLFRI 532

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE      L   +  +       ++           + +   +D   +  
Sbjct: 533 DIGKDVFYALDEAEKNGILDRITAEKRKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 591

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                    +   +  +   +       +    
Sbjct: 592 VQLTIDDADDTMALMDMLLAKKRSGDRKTWLEA 624



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  RKG + + R+KGLGEMN  QL ETT++P+TR L+++ I DA     L   L
Sbjct: 550 ILDRITAEKRKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDADDTMALMDML 609


>gi|107104066|ref|ZP_01367984.1| hypothetical protein PaerPA_01005139 [Pseudomonas aeruginosa PACS2]
 gi|116053115|ref|YP_793435.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296391808|ref|ZP_06881283.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PAb1]
 gi|313109973|ref|ZP_07795899.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 39016]
 gi|115588336|gb|ABJ14351.1| topoisomerase IV subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310882401|gb|EFQ40995.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 39016]
          Length = 629

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/644 (34%), Positives = 336/644 (52%), Gaps = 23/644 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  + V 
Sbjct: 2   ATYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKSVQVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V D+GRG+P D+H EEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+SV
Sbjct: 58  LHQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++R+KR+ N Y M+F +G  D+ L V G+    +TGT V F P    F    
Sbjct: 118 VNALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSAK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H L+  + L   + +   DK + E  E     + G+ ++++        L   
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDKNTGERVEWHF--EDGLRSYLTDAVAELPRLPDE 235

Query: 247 PIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P          ++  A +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 236 PFCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   V D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL EH      + +  +  +       +A     RK +    +LPGKLADC+ ++P ++
Sbjct: 355 LWLNEHAEIGLQLAELAISNA---GRRLKAGKKVERKKITQGPALPGKLADCAGQEPMRA 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G    D+ +LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY I 
Sbjct: 472 GAS--DLAQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   +  L   +  ++       K  +++      ++     +  +    
Sbjct: 530 LGKEIYYALDEAERDGILERLAAEKKR-----GKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 606 PNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFI 645
               +  +E A     I  +   +       S      N    +
Sbjct: 585 RRLVQLTLEDATGTLEIMDMLLAKKRAGDRKSWLESKGNLAEVL 628



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + DA+   ++   L
Sbjct: 546 ILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTLEIMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 606 LAKKRAGD----RKSWLES 620


>gi|15600160|ref|NP_253654.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PAO1]
 gi|254244145|ref|ZP_04937467.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 2192]
 gi|81783542|sp|Q9HUJ8|PARE_PSEAE RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|9951249|gb|AAG08352.1|AE004909_8 topoisomerase IV subunit B [Pseudomonas aeruginosa PAO1]
 gi|126197523|gb|EAZ61586.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 2192]
          Length = 629

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/644 (34%), Positives = 336/644 (52%), Gaps = 23/644 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  + V 
Sbjct: 2   ATYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKSVQVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V D+GRG+P D+H EEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+SV
Sbjct: 58  LHQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++R+KR+ N Y M+F +G  D+ L V G+    +TGT V F P    F    
Sbjct: 118 VNALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSAK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H L+  + L   + +   DK + E  E     + G+ ++++        L   
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDKNTGERVEWHF--EDGLRSYLTDAVAELPRLPDE 235

Query: 247 PIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P          ++  A +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 236 PFCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   V D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL EH      + +  +  +       +A     RK +    +LPGKLADC+ ++P ++
Sbjct: 355 LWLNEHAEIGLQLAELAISNA---GRRLKAGKKVERKKITQGPALPGKLADCAGQEPMRA 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G    D+ +LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY I 
Sbjct: 472 GAS--DLAQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   +  L   +  ++       K  +++      ++     +  +    
Sbjct: 530 LGKDIYYALDEAERDGILERLAAEKKR-----GKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 606 PNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFI 645
               +  +E A     I  +   +       S      N    +
Sbjct: 585 RRLVQLTLEDATGTLEIMDMLLAKKRAGDRKSWLESKGNLAEVL 628



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + DA+   ++   L
Sbjct: 546 ILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTLEIMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 606 LAKKRAGD----RKSWLES 620


>gi|127511483|ref|YP_001092680.1| DNA topoisomerase IV subunit B [Shewanella loihica PV-4]
 gi|126636778|gb|ABO22421.1| DNA topoisomerase IV subunit B [Shewanella loihica PV-4]
          Length = 628

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/632 (35%), Positives = 336/632 (53%), Gaps = 15/632 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATRIDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEGI   E+I+T+LHAGGKF+  +Y+ SGGLHGVG+S
Sbjct: 58  ILHKDNSLEVIDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNNNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +++ ++R G +YEM+F +G     L VTG+ G  +TGT V F P++  F   
Sbjct: 118 VVNALSNRVEITVRRSGQVYEMAFEHGDKVEELTVTGTCGRRNTGTRVHFWPTASYFDSV 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + LR  + L   ++I   +K++ +       Y+ G+  ++    +    L +
Sbjct: 178 NFSIPKLIYLLRAKAVLCPGLRIKFTNKQTGDV--EEWCYESGLTDYLKSSTQGALTLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + +  ++D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFIGSMAGNTEAVDWAITWLPEGGDSLNESYVNLIPTPLGGTHVNGFRQGLLEAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +  + +LSIKM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 296 EFRN-LIPRGIKLSPEDIWDRSSFILSIKMQDPQFAGQTKEKLSSRQSAAFVSGIVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  H  +A+ + +  +  +  R  A        RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNTHTDQAEALAEMCISNAQKRLKAA---KKVARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEASQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              DS DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  PPL+ +
Sbjct: 472 P--DSNDISELRYGKICILADADSDGLHIATLLCALFMKHYKVLVEKGHIYVAMPPLFRV 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   +  L   S  ++      ++           + +   +D   +  
Sbjct: 530 DVGKEVYYALDEAEKQGILDRISAEKKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                    +   I  +   +       +   
Sbjct: 589 VQLTIDDAEDTLAIMDMLLAKKRSGDRKTWLE 620



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I DA     +   L
Sbjct: 547 ILDRISAEKKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEDTLAIMDML 606

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 607 LAKKRSGD----RKTWLET 621


>gi|289662651|ref|ZP_06484232.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 629

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/588 (38%), Positives = 320/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQVEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKFN ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F      F   
Sbjct: 118 VVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L  
Sbjct: 178 KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAEHEMLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 ELFVGSLKKDTEIVDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRE 577



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 546 LLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML 605


>gi|325916059|ref|ZP_08178349.1| DNA topoisomerase IV subunit B [Xanthomonas vesicatoria ATCC 35937]
 gi|325537735|gb|EGD09441.1| DNA topoisomerase IV subunit B [Xanthomonas vesicatoria ATCC 35937]
          Length = 629

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/588 (38%), Positives = 321/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQVEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKFN ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVSDDGRGMPVDMHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +GI  + L V G+    +TGT + F      F   
Sbjct: 118 VVNALSTKVELFIKREGSEHRMEFRDGIAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L  
Sbjct: 178 KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAEHEMLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 DLFAGSLKKDTEIVDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRE 577



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 546 LLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+++++ 
Sbjct: 606 LAKKRAGD----RKQWLES 620


>gi|326402177|ref|YP_004282258.1| DNA topoisomerase IV subunit B [Acidiphilium multivorum AIU301]
 gi|325049038|dbj|BAJ79376.1| DNA topoisomerase IV subunit B [Acidiphilium multivorum AIU301]
          Length = 653

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 230/593 (38%), Positives = 330/593 (55%), Gaps = 18/593 (3%)

Query: 1   MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D  + +    SY A  I++L+GL+ V++RP MYIG TD    +HH+  E+LDNA+DE+
Sbjct: 1   MTDLFEQAAGQASYSAKDIEVLEGLEPVRRRPGMYIGGTDDA-AMHHLAAELLDNAMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A II +TL      TV DNGRGIP D H +    SA EVI+T LH+GGKF  K+Y 
Sbjct: 60  VAGHASIIEMTLAPGNLLTVRDNGRGIPVDPHPKFRDKSALEVILTTLHSGGKFAGKAYA 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNAL+  L++ + RE  +++  +  G     LV  G+  N  GT + F
Sbjct: 120 TSGGLHGVGSSVVNALAERLEVEVAREKTLWKQDYARGKPLTKLVNAGATPNRRGTLIRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL------IDKRSPEPREITMFYKGGI 229
           +P  +IF  + F+   L    R  ++L   V+I        I   +  P +  + + GG+
Sbjct: 180 VPDPEIFGDKKFSPARLYRMCRSKAYLFRGVRIRWACDAALIAAGADVPAQAELHFPGGL 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
              ++        L+      Q     D   I+ A  W +     +  + N IP   GGT
Sbjct: 240 ADSLAEELGAAPKLVAPVWAGQADLPDDAGRIEWACAWLETGEATLSTYCNTIPTTLGGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G R+AL + +  + E+    +     +  +D      + LS+ + DP+F  QTKEKL
Sbjct: 300 HEAGFRAALLKGLRGFGEQRGNKRAA--VITAEDATGALAAKLSLFIRDPQFQGQTKEKL 357

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S E + + E+ + D    +L   P  A  ++  V++ +  R   R  +D T RK     
Sbjct: 358 TSPEAQKLTEAALRDRFEHFLTGDPANADNLLAFVIERAEERIRRREQKD-TPRKSATRR 416

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKL DCS    + +E+FLVEGDSAGGSAKQ R+RE QA+LPLRGKILNV  A  +K
Sbjct: 417 LRLPGKLTDCSRESREDTEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTEK 476

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +QE+  LI ALG G+G D F I+ LRY +IIIMTDADVDGAHI +LL+TFF+R++P 
Sbjct: 477 LRQNQELKDLIEALGCGVG-DRFQIDALRYGRIIIMTDADVDGAHIASLLMTFFYRELPE 535

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           LI  G +Y+ +PPLY +T+G    Y  D+   +  +     +         KG
Sbjct: 536 LIRGGHVYLAQPPLYRLTQGGKSVYAMDDGERDRLVKTAFKANAKVEISRFKG 588



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 31/229 (13%)

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK-SWHGSINNSD 661
                  + F+ +   +G    ++      ++       LN  +  +EK   +  + +  
Sbjct: 428 RESREDTEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTEKLRQNQELKD-- 485

Query: 662 ILVKRIARGVQEQFVLEGS------SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI- 714
            L++ +  GV ++F ++         +         I S  +   Y  +  LI  G    
Sbjct: 486 -LIEALGCGVGDRFQIDALRYGRIIIMTDADVDGAHIASLLMTFFYRELPELIRGGHVYL 544

Query: 715 ---KITGPCSLLDTI--FSIGRK------------GISMQRYKGLGEMNASQLWETTLNP 757
               +        ++     G +             + + R+KGLGEM  + L ETT++P
Sbjct: 545 AQPPLYRLTQGGKSVYAMDDGERDRLVKTAFKANAKVEISRFKGLGEMPPAILKETTMDP 604

Query: 758 DTRSLLRVK--ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             R LLRV       ++  ++   LMG + E R  FIQ+++     LD+
Sbjct: 605 KRRVLLRVLAPPEARAETAEIVESLMGRKPELRFRFIQDHASSVQELDV 653


>gi|147108|gb|AAA24298.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110]
          Length = 601

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 218/584 (37%), Positives = 329/584 (56%), Gaps = 14/584 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
             GK + Y   EE  E  L      +        KG+   N ++
Sbjct: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 91/260 (35%), Gaps = 43/260 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ 772
           TTL+P+TR L+++ I D   
Sbjct: 577 TTLDPNTRRLVQLTIDDEDD 596


>gi|152986866|ref|YP_001351015.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PA7]
 gi|150962024|gb|ABR84049.1| DNA topoisomerase IV, B subunit [Pseudomonas aeruginosa PA7]
          Length = 629

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/644 (35%), Positives = 336/644 (52%), Gaps = 23/644 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  + V 
Sbjct: 2   ATYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKSVQVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V D+GRG+P D+H EEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+SV
Sbjct: 58  LHQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++R+KR+ N Y M+F +G  D  L V G+ G  +TGT V F P    F    
Sbjct: 118 VNALSTRVEVRVKRDANEYRMTFADGFKDTDLEVIGTVGRRNTGTSVHFWPDPKYFDSAK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H L+  + L   + +   DK + E  E     + G+ ++++        L   
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDKNTGERVEWHF--EDGLRSYLTDAVAELPRLPDE 235

Query: 247 PIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P          ++  A +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 236 PFCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   V D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL EH      + +  +  +       +A     RK +    +LPGKLADC+ ++P ++
Sbjct: 355 LWLNEHAEIGLQLAELAISNA---GRRLKAGKKVERKKITQGPALPGKLADCAGQEPMRA 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G    D+ +LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY I 
Sbjct: 472 GAS--DLAQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   +  L   +  ++       K  +++      ++     +  +    
Sbjct: 530 LGKDIYYALDEAERDGILERLAAEKKR-----GKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 606 PNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFI 645
               +  +E A     I  +   +       S      N    +
Sbjct: 585 RRLVQLTLEDATGTLEIMDMLLAKKRAGDRKSWLESKGNLAEVL 628



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + DA+   ++   L
Sbjct: 546 ILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTLEIMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 606 LAKKRAGD----RKSWLES 620


>gi|281180082|dbj|BAI56412.1| DNA topoisomerase IV subunit B [Escherichia coli SE15]
          Length = 630

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G IY ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY +
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRL 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 100/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRLDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|163841158|ref|YP_001625563.1| DNA topoisomerase IV subunit B [Renibacterium salmoninarum ATCC
           33209]
 gi|162954634|gb|ABY24149.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209]
          Length = 703

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/665 (35%), Positives = 338/665 (50%), Gaps = 59/665 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S Y+A  + +L+GLDAV+KRP MYIG TD   GL H ++E+LDNA+DE+L G+
Sbjct: 1   MA--ATKSDYNARHLSVLEGLDAVRKRPGMYIGSTDS-RGLMHCLWEILDNAVDEALGGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V L+ D S  V D+GRGIP D+  + G++  EV++T+LHAGGKF   SY  SGGL
Sbjct: 58  GQKILVILHKDNSVEVHDDGRGIPVDIEPKTGLTGVEVVLTKLHAGGKFGGSSYAASGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------------DNPL 159
           HGVG SVVNALS+ L  ++ R G  Y+MSF  G                        + L
Sbjct: 118 HGVGASVVNALSARLDAQVDRGGKTYQMSFRRGEPGVFKETGRSLSPNSTFEPFVQKSVL 177

Query: 160 VVTGSAGN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--- 214
            V G+     TGT + +     IF     F+Y+ L  R R+ SFL   ++I++ D+R   
Sbjct: 178 GVIGTTKRGVTGTRIRYWADQQIFTPDAKFSYEELAARARQTSFLVPGLRITIRDERGLA 237

Query: 215 ----SPEPREITMFYKGGIEAFVSY----------LDRHKKPLMQS---------PIRIQ 251
                  P +    + GGI  FV +             H     +           +   
Sbjct: 238 NTAGELGPHKEVFHHDGGISEFVDFLAVDAPVTDIWRLHGTASFKETVPVLDDNGHMMPT 297

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGS 310
               +  +D+A+RW  GY   +  F N I    GG H  G   AL R     +E +    
Sbjct: 298 EVERDCEVDIALRWGIGYETTMRSFVNIISTPKGGRHQEGFEQALLRTFRKVIEANARKL 357

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K     +  DD + G T+VL++++ +P+F  QTKE L +  VR++V   V   ++A L  
Sbjct: 358 KAGNDKIEKDDVQAGLTAVLTVRLAEPQFEGQTKEVLGTPAVRAIVAKVVEQEITAKLNS 417

Query: 371 HPLEAKI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
                K     +++KV+     R +AR  ++  RRK  L+ +SLP KLADC   + +++E
Sbjct: 418 SNRNDKAQSALLLEKVVSEMKSRISARVHKETQRRKNALETSSLPAKLADCRSEETERTE 477

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSA G+A+  RS + QA+LP+RGKILNV++A    MLS+ E   LI  +G G G
Sbjct: 478 LFIVEGDSALGTARLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSG 537

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +  FDI   RY KII+MTDADVDGAHIRTLLLT FFR M  +I  G +Y   PPL+ +  
Sbjct: 538 RS-FDIEGARYGKIIVMTDADVDGAHIRTLLLTLFFRYMRPMIDAGRVYAAVPPLHRVEV 596

Query: 547 GKSLQYVKDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
               Q   +      +  +N  L    +     K  I +      +D     +  +   +
Sbjct: 597 INHGQKANELIYTYTENELNDLLKRLEKEGKRYKEPIQRYKGLGEMDADQLAETTMDPRH 656

Query: 606 PNHDK 610
               +
Sbjct: 657 RTLRR 661



 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 721 SLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
            LL  +   G++    +QRYKGLGEM+A QL ETT++P  R+L RV  T A  A+  F  
Sbjct: 617 DLLKRLEKEGKRYKEPIQRYKGLGEMDADQLAETTMDPRHRTLRRVTATHAEAAEKTFEL 676

Query: 780 LMGDEVEPRREFI 792
           LMG +V PR+EFI
Sbjct: 677 LMGSDVAPRKEFI 689


>gi|157828185|ref|YP_001494427.1| DNA topoisomerase IV subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932887|ref|YP_001649676.1| DNA topoisomerase IV subunit B [Rickettsia rickettsii str. Iowa]
 gi|157800666|gb|ABV75919.1| DNA topoisomerase IV subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907974|gb|ABY72270.1| topoisomerase IV subunit B [Rickettsia rickettsii str. Iowa]
          Length = 662

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/579 (38%), Positives = 333/579 (57%), Gaps = 13/579 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + +++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE++ G+A 
Sbjct: 13  NKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDS-NAMHHLVSEVLDNAMDEAVAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           IIT+ ++ D S T+ DNGRGIP D H +    SA EVI+T LH+GGKF+   Y  +GGLH
Sbjct: 72  IITIKMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L++++ ++G +Y  S+  G     L+   ++    GT + F P  +I
Sbjct: 132 GVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASTRLRGTSINFTPDPEI 191

Query: 182 FSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLD 237
           FS    FN   +    R  ++L   V I  + +   +        + +  G++ ++S   
Sbjct: 192 FSETLHFNPKKIYELARSKAYLYRGVTIEWVCEVEVQSDIPKKALISFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRS 294
                ++       I+ + D I ++ A+ W +      V  + N +P   GGTH  GL+S
Sbjct: 252 TLDNLVIPGIFAGNIESTSDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGTHEQGLKS 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS+ V  
Sbjct: 312 AILRGLKAYGEMIGNKKAA--NLTIEDILETTSVVLSIFIAEPSFQGQTKEKLVSNGVSK 369

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ + D    +L      A  +++ V+  +  R + +  ++   RK       LPGKL
Sbjct: 370 PVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKN-ISRKNATQKLRLPGKL 428

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 429 ADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAI 488

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G L
Sbjct: 489 QDLEIALACGSLKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHL 547

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           Y+ KPPLY +T+     Y  DEE           + + +
Sbjct: 548 YLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAK 586



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K++       + ++      V    +      F F    K +    +      +  L  +
Sbjct: 501 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQS 560

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L D +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V +
Sbjct: 561 NKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTL 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            D    D +   LMG + E R +FI E +L       S LDI
Sbjct: 621 EDVQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELDI 662


>gi|323183615|gb|EFZ69012.1| DNA topoisomerase IV, B subunit [Escherichia coli 1357]
          Length = 630

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|332999781|gb|EGK19365.1| DNA topoisomerase IV, B subunit [Shigella flexneri K-272]
 gi|333015649|gb|EGK34988.1| DNA topoisomerase IV, B subunit [Shigella flexneri K-227]
          Length = 630

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/648 (34%), Positives = 343/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L++D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHVDQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|148259050|ref|YP_001233177.1| DNA topoisomerase IV subunit B [Acidiphilium cryptum JF-5]
 gi|146400731|gb|ABQ29258.1| DNA topoisomerase IV subunit B [Acidiphilium cryptum JF-5]
          Length = 653

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/593 (38%), Positives = 329/593 (55%), Gaps = 18/593 (3%)

Query: 1   MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+D  + +    SY A  I++L+GL+ V++RP MYIG TD    +HH+  E+LDNA+DE+
Sbjct: 1   MTDLFEQAAGQASYSAKDIEVLEGLEPVRRRPGMYIGGTDDA-AMHHLAAELLDNAMDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115
           + G+A II +TL      TV DNGRGIP D H +    SA EVI+T LH+GGKF  K+Y 
Sbjct: 60  VAGHASIIEMTLAPGNLLTVRDNGRGIPVDPHPKFRDKSALEVILTTLHSGGKFAGKAYA 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVG SVVNAL+  L++ + RE  +++  +  G     LV  G+  N  GT + F
Sbjct: 120 TSGGLHGVGSSVVNALAERLEVEVAREKTLWKQDYARGKPLTKLVNAGATPNRRGTLIRF 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGI 229
           +P  +IF  + F+   L    R  ++L   V+I            +  P +  + + GG+
Sbjct: 180 VPDPEIFGDKKFSPARLYRMCRSKAYLFRGVRIRWTCDAALIAAGADVPAQAELHFPGGL 239

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
              ++        L+      Q     D   I+ A  W +     +  + N IP   GGT
Sbjct: 240 ADSLAEELGAAPKLVAPVWAGQADLPDDAGRIEWACAWLEAGEATLSTYCNTIPTTLGGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G R+AL + +  + E+    +     +  +D      + LS+ + DP+F  QTKEKL
Sbjct: 300 HEAGFRAALLKGLRGFGEQRSNKRAA--VITAEDATGALAAKLSLFIRDPQFQGQTKEKL 357

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S E + + E+ + D    +L   P  A  ++  V++ +  R   R  +D T RK     
Sbjct: 358 TSPEAQKLTEAALRDRFEHFLTGDPANADNLLAFVIERAEERIRRREQKD-TPRKSATRR 416

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKL DCS    + +E+FLVEGDSAGGSAKQ R+RE QA+LPLRGKILNV  A  +K
Sbjct: 417 LRLPGKLTDCSRESREDTEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTEK 476

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +QE+  LI ALG G+G D F I+ LRY +IIIMTDADVDGAHI +LL+TFF+R++P 
Sbjct: 477 LRQNQELKDLIEALGCGVG-DRFQIDALRYGRIIIMTDADVDGAHIASLLMTFFYRELPE 535

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           LI  G +Y+ +PPLY +T+G    Y  D+   +  +     +         KG
Sbjct: 536 LIRGGHVYLAQPPLYRLTQGGKSVYAMDDGERDRLVKTAFKANAKVEISRFKG 588



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 31/229 (13%)

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK-SWHGSINNSD 661
                  + F+ +   +G    ++      ++       LN  +  +EK   +  + +  
Sbjct: 428 RESREDTEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTEKLRQNQELKD-- 485

Query: 662 ILVKRIARGVQEQFVLEGS------SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI- 714
            L++ +  GV ++F ++         +         I S  +   Y  +  LI  G    
Sbjct: 486 -LIEALGCGVGDRFQIDALRYGRIIIMTDADVDGAHIASLLMTFFYRELPELIRGGHVYL 544

Query: 715 ---KITGPCSLLDTI--FSIGRK------------GISMQRYKGLGEMNASQLWETTLNP 757
               +        ++     G +             + + R+KGLGEM  + L ETT++P
Sbjct: 545 AQPPLYRLTQGGKSVYAMDDGERDRLVKTAFKANAKVEISRFKGLGEMPPAILKETTMDP 604

Query: 758 DTRSLLRVK--ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
             R LLRV       ++  ++   LMG + E R  FIQ+++     LD+
Sbjct: 605 KRRVLLRVLAPPEARAETAEIVESLMGRKPELRFRFIQDHASSVQELDV 653


>gi|254238319|ref|ZP_04931642.1| topoisomerase IV subunit B [Pseudomonas aeruginosa C3719]
 gi|126170250|gb|EAZ55761.1| topoisomerase IV subunit B [Pseudomonas aeruginosa C3719]
          Length = 629

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/644 (34%), Positives = 336/644 (52%), Gaps = 23/644 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  + V 
Sbjct: 2   ATYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKSVQVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V D+GRG+P D+H EEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+SV
Sbjct: 58  LHQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++R+KR+ N Y M+F +G  D+ L V G+    +TGT V F P    F    
Sbjct: 118 VNALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSAK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H L+  + L   + +   DK + E  E     + G+ ++++        L   
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDKNTGERVEWHF--EDGLRSYLTDAVAELPRLPDE 235

Query: 247 PIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P          ++  A +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 236 PFCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   V D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL EH      + +  +  +       +A     RK +    +LPGKLADC+ ++P ++
Sbjct: 355 LWLNEHAEIGLQLAELAISNA---GRRLKAGKKVERKKITQGPALPGKLADCAGQEPMRA 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G    D+ +LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY I 
Sbjct: 472 GVS--DLAQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   +  L   +  ++       K  +++      ++     +  +    
Sbjct: 530 LGKEIYYALDEAERDGILERLAAEKKR-----GKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 606 PNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFI 645
               +  +E A     I  +   +       S      N    +
Sbjct: 585 RRLVQLTLEDATGTLEIMDMLLAKKRAGDRKSWLESKGNLAEVL 628



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + DA+   ++   L
Sbjct: 546 ILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTLEIMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 606 LAKKRAGD----RKSWLES 620


>gi|15602235|ref|NP_245307.1| DNA topoisomerase IV subunit B [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720616|gb|AAK02454.1| ParE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 632

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/645 (36%), Positives = 335/645 (51%), Gaps = 18/645 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S+Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA+ I V
Sbjct: 2   TSNYSAQEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGYANKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRG+P D+H  E +S  EVI+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHKDQSLEVIDNGRGMPVDIHPVEKLSGVEVILTKLHAGGKFSNKNYEFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + + +KR G +Y+++F NG     L V G+ G  +TGT V F P+   F   
Sbjct: 118 VVNALSERVDVTVKRNGEVYKIAFENGRKVEELEVIGTCGRRNTGTTVHFKPNPKYFDSD 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +                  +       P   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKINQTEDCWCYEDGLADYLSEAVNGLETLPETP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +G  + +S    +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGDFKGDTEAVSW-ALLWLPEGGDLLSESYVNLIPTIQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  DD  E    VLS+KM DP+F+ QTKE+L S +    V   V D  S
Sbjct: 297 FRNLLPRG-VKLSADDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAVFVAGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  +A+++ +  + ++       RA     RK ++   +LPGKLADCS++D  K+
Sbjct: 356 LWLNQHVQQAELLAEMAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCSQQDLDKT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      +++LSS EI  +  A+  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSEQVLSSSEIHDI--AVALGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +Y+  PPLY I 
Sbjct: 471 DPDNEDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQKGHVYVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   +  L      +        KG+   N L+        +D   +   
Sbjct: 531 LGKDVFYALDESEKDAILDRLKGKKGKPNVQRFKGLGEMNPLQ---LRETTMDPNTRRLV 587

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  +EQ   +       D  +    A    N L    ++ +
Sbjct: 588 Q--LTYALEQEEQAATLEL-MDMLLAKKRAEDRKNWLQTKGDQVD 629



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 8/79 (10%)

Query: 724 DTIFS--IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADDL 776
           D I     G+KG  ++QR+KGLGEMN  QL ETT++P+TR L+++       + +   +L
Sbjct: 545 DAILDRLKGKKGKPNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTYALEQEEQAATLEL 604

Query: 777 FSRLMGDE-VEPRREFIQE 794
              L+  +  E R+ ++Q 
Sbjct: 605 MDMLLAKKRAEDRKNWLQT 623


>gi|297581055|ref|ZP_06942980.1| topoisomerase IV [Vibrio cholerae RC385]
 gi|297534881|gb|EFH73717.1| topoisomerase IV [Vibrio cholerae RC385]
          Length = 626

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/590 (37%), Positives = 332/590 (56%), Gaps = 19/590 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L GY
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGY 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKIQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G     L VTG+ G  +TGT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDT 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F   +F+   L + LR  + L   ++I   DK      E    Y+ G++ +++   + 
Sbjct: 172 KYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDK--VNNNEHRWLYEDGLKDYLAEGVKG 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P   + +    +   A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 230 YTLLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLD 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    + G+D  +    VLSIKM DP+F+ QTKE+L S +  + V  
Sbjct: 290 AMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL E P  A+ + +  +  +  R    RA     RK +    +LPGKL DC+
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSR---MRASKKVVRKKIASGPALPGKLTDCT 405

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  ++ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  + 
Sbjct: 406 VQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI- 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ++  GI  D+ ++  LRY K+ I+ DAD DG HI TLL   F R   +L+  G +Y+  
Sbjct: 465 -SVALGIDPDNDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAM 523

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           PPLY I  GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 524 PPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQ 573



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  +      +Y ++             +  +   +      +   
Sbjct: 457 ASQEVHDISVALGIDPDNDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 516

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 577 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRN 620


>gi|153831107|ref|ZP_01983774.1| topoisomerase IV, subunit B [Vibrio cholerae 623-39]
 gi|148873413|gb|EDL71548.1| topoisomerase IV, subunit B [Vibrio cholerae 623-39]
          Length = 626

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/590 (38%), Positives = 333/590 (56%), Gaps = 19/590 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L GY
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGY 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKIQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G     L VTG+ G  +TGT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDT 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F   +F+   L + LR  + L   ++I   DK      E    Y+ G++ +++   + 
Sbjct: 172 KYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDK--VNNNEHRWLYEDGLKDYLAEGVKG 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P   + +    +   A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 230 YTLLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLD 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    + G+D  +    VLSIKM DP+F+ QTKE+L S +  + V  
Sbjct: 290 AMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL E P  A+ + +  +  +  R    RA     RK +    +LPGKLADC+
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSR---MRASKKVVRKKIASGPALPGKLADCT 405

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  ++ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  + 
Sbjct: 406 VQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI- 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ++  GI  D+ ++  LRY K+ I+ DAD DG HI TLL   F R   +L+  G +Y+  
Sbjct: 465 -SVALGIDPDNDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAM 523

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           PPLY I  GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 524 PPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQ 573



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLADCTVQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  +      +Y ++             +  +   +      +   
Sbjct: 457 ASQEVHDISVALGIDPDNDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 516

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 577 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRTWLQRN 620


>gi|212633643|ref|YP_002310168.1| DNA topoisomerase IV subunit B [Shewanella piezotolerans WP3]
 gi|212555127|gb|ACJ27581.1| DNA gyrase, B subunit [Shewanella piezotolerans WP3]
          Length = 631

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/632 (35%), Positives = 334/632 (52%), Gaps = 15/632 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 5   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHASRIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 61  ILHADNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALSS +++ ++R   +Y+M+F +G     L VTG+ G  +TGT V F P +  F   
Sbjct: 121 VVNALSSRVEITVRRNAEVYDMAFEHGEKVEDLRVTGTCGRRNTGTRVHFWPDASYFDSG 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + L+  + L   ++I  ++K++ E +E     + G+E ++         L +
Sbjct: 181 NFSITKLSYLLKAKAVLCPGLRIKFVNKQTNETQEWFY--ESGLEDYLKSSIDGVPMLPE 238

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P       +  + D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 239 VPFVGNFKGNLEAADWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFRQGLLESMREFC 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +  T +LSIKM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 299 EFRN-LVPRGIKLTPEDIWDRCTFILSIKMQDPQFAGQTKEKLSSRQCAAFVSGIVRDAF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +  +A+ +    ++ +       +A     RK +    +LPGKL DCS +DP +
Sbjct: 358 SLWLNTNTEQAEALADMCINNAQ---KRLKAAKKVARKRITSGPALPGKLTDCSGQDPMR 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 415 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDATQVLASQEVHDISVAIGCD 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              DS DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  PPL+ I
Sbjct: 475 P--DSSDISELRYGKICILADADSDGLHIATLLCALFMKHYRVLVEEGHIYVAMPPLFRI 532

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   +  L   +  +       ++           + +   +D   +  
Sbjct: 533 DIGKEVFYALDEAERDGILDRIAAEKRKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 591

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                    +   +  +   +           
Sbjct: 592 VQLTVDDADDTLAVMDMLLAKKRSSDRKVWLE 623



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  RKG + + R+KGLGEMN  QL ETT++P+TR L+++ + DA     +   L
Sbjct: 550 ILDRIAAEKRKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTVDDADDTLAVMDML 609


>gi|15642428|ref|NP_232061.1| DNA topoisomerase IV subunit B [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591635|ref|ZP_01678879.1| topoisomerase IV, subunit B [Vibrio cholerae 2740-80]
 gi|147674220|ref|YP_001217932.1| DNA topoisomerase IV subunit B [Vibrio cholerae O395]
 gi|153214083|ref|ZP_01949217.1| topoisomerase IV, subunit B [Vibrio cholerae 1587]
 gi|153820156|ref|ZP_01972823.1| topoisomerase IV, subunit B [Vibrio cholerae NCTC 8457]
 gi|153827239|ref|ZP_01979906.1| topoisomerase IV, subunit B [Vibrio cholerae MZO-2]
 gi|227082552|ref|YP_002811103.1| topoisomerase IV, subunit B [Vibrio cholerae M66-2]
 gi|229507509|ref|ZP_04397014.1| topoisomerase IV subunit B [Vibrio cholerae BX 330286]
 gi|229512295|ref|ZP_04401774.1| topoisomerase IV subunit B [Vibrio cholerae B33]
 gi|229514057|ref|ZP_04403519.1| topoisomerase IV subunit B [Vibrio cholerae TMA 21]
 gi|229519432|ref|ZP_04408875.1| topoisomerase IV subunit B [Vibrio cholerae RC9]
 gi|229521258|ref|ZP_04410678.1| topoisomerase IV subunit B [Vibrio cholerae TM 11079-80]
 gi|229527037|ref|ZP_04416432.1| topoisomerase IV subunit B [Vibrio cholerae 12129(1)]
 gi|229607015|ref|YP_002877663.1| DNA topoisomerase IV subunit B [Vibrio cholerae MJ-1236]
 gi|254849555|ref|ZP_05238905.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|298500211|ref|ZP_07010016.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MAK 757]
 gi|9657006|gb|AAF95574.1| topoisomerase IV, subunit B [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121546506|gb|EAX56719.1| topoisomerase IV, subunit B [Vibrio cholerae 2740-80]
 gi|124115509|gb|EAY34329.1| topoisomerase IV, subunit B [Vibrio cholerae 1587]
 gi|126509296|gb|EAZ71890.1| topoisomerase IV, subunit B [Vibrio cholerae NCTC 8457]
 gi|146316103|gb|ABQ20642.1| topoisomerase IV, subunit B [Vibrio cholerae O395]
 gi|149738853|gb|EDM53189.1| topoisomerase IV, subunit B [Vibrio cholerae MZO-2]
 gi|227010440|gb|ACP06652.1| topoisomerase IV, subunit B [Vibrio cholerae M66-2]
 gi|227014323|gb|ACP10533.1| topoisomerase IV, subunit B [Vibrio cholerae O395]
 gi|229335434|gb|EEO00916.1| topoisomerase IV subunit B [Vibrio cholerae 12129(1)]
 gi|229341790|gb|EEO06792.1| topoisomerase IV subunit B [Vibrio cholerae TM 11079-80]
 gi|229344121|gb|EEO09096.1| topoisomerase IV subunit B [Vibrio cholerae RC9]
 gi|229349238|gb|EEO14195.1| topoisomerase IV subunit B [Vibrio cholerae TMA 21]
 gi|229352260|gb|EEO17201.1| topoisomerase IV subunit B [Vibrio cholerae B33]
 gi|229355014|gb|EEO19935.1| topoisomerase IV subunit B [Vibrio cholerae BX 330286]
 gi|229369670|gb|ACQ60093.1| topoisomerase IV subunit B [Vibrio cholerae MJ-1236]
 gi|254845260|gb|EET23674.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|297540904|gb|EFH76958.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MAK 757]
          Length = 626

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/590 (38%), Positives = 332/590 (56%), Gaps = 19/590 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L GY
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGY 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKIQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G     L VTG+ G  +TGT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDT 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F   +F+   L + LR  + L   ++I   DK      E    Y+ G++ +++   + 
Sbjct: 172 KYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDK--VNNNEHRWLYEDGLKDYLAEGVKG 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P   + +    +   A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 230 YTLLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLD 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    + G+D  +    VLSIKM DP+F+ QTKE+L S +  + V  
Sbjct: 290 AMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL E P  A+ + +  +  +  R    RA     RK +    +LPGKL DC+
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSR---MRASKKVVRKKIASGPALPGKLTDCT 405

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  ++ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  + 
Sbjct: 406 VQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI- 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ++  GI  DS ++  LRY K+ I+ DAD DG HI TLL   F R   +L+  G +Y+  
Sbjct: 465 -SVALGIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAM 523

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           PPLY I  GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 524 PPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQ 573



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   +      +   
Sbjct: 457 ASQEVHDISVALGIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 516

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 577 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRN 620


>gi|309793595|ref|ZP_07688021.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 145-7]
 gi|308122552|gb|EFO59814.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 145-7]
          Length = 630

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L++QE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLATQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ATQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|330448753|ref|ZP_08312400.1| DNA topoisomerase IV, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492944|dbj|GAA06897.1| DNA topoisomerase IV, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 627

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 220/586 (37%), Positives = 326/586 (55%), Gaps = 14/586 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + + SY+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTDQSYNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGHARKV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVVDDGRGMPVDIHPEEGVSGVELILCKLHAGGKFSGKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFS 183
           +SVVNALS  +++ +KR+G +Y+++F NG   + L V G+ G    GT V F P +  F 
Sbjct: 117 ISVVNALSKRVEVTVKRDGQVYQIAFENGDKVSELEVIGTCGRRAKGTRVHFWPDAKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+  L+  + L   ++I   +K + E        + G++ +++   +    L
Sbjct: 177 SAKFSVSRLKSNLKAKAVLCPGLEIVFTNKITDETIRWCY--EDGLKDYLAEGVKGYTLL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     S    + D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEEPFTGVFSAQTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  +    VLS+K+ DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTADDIWDRCAYVLSVKIQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL E P  A+ + +  +  +       RA     RK +    +LPGKLADCS++D 
Sbjct: 354 AFSLWLNERPQLAEQLAEVCIANAH---RRMRASKKVVRKKIASGPALPGKLADCSQQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILNTWEVSADQVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY KI ++ DAD DG HI TLL   F +   +L+  G ++I  PPLY
Sbjct: 469 LGIDPDSDDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFEALVRAGHVFIAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I  GK + Y  DE      L               KG+   N L+
Sbjct: 529 RIDLGKEVYYALDEAEKNGILDRLKGKRGKVNVQRFKGLGEMNPLQ 574



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 107/288 (37%), Gaps = 54/288 (18%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ +   L + L    ++        SK V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNERPQLAEQLAEVCIANAHRRMRASKKVVRKKIASGPALPGKLADCSQQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++   +  ++       LN             ++   +L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILN----------TWEVSADQVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S    G +Y +I             +  +   ++    +L+  
Sbjct: 458 ASQEVHDISVALGIDPDSDDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFEALVRA 517

Query: 711 G----------------------DKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNA 747
           G                      D+ +  G    L      G++G +++QR+KGLGEMN 
Sbjct: 518 GHVFIAMPPLYRIDLGKEVYYALDEAEKNGILDRLK-----GKRGKVNVQRFKGLGEMNP 572

Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQE 794
            QL ETT++P+TR L+++ I D S+ +++   L+G +  E RR ++Q 
Sbjct: 573 LQLRETTMDPNTRRLVQLTIDDDSETNEMMDMLLGKKRAEDRRHWLQS 620


>gi|283787161|ref|YP_003367026.1| topoisomerase IV subunit B [Citrobacter rodentium ICC168]
 gi|282950615|emb|CBG90287.1| topoisomerase IV subunit B [Citrobacter rodentium ICC168]
          Length = 630

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 218/584 (37%), Positives = 326/584 (55%), Gaps = 14/584 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             SY+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQSYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D  +   +      + G+  ++         L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDLVNNSEQRWCY--QDGLNDYLGEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P       D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFEGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 TLWLNQNVQSAEMLAEMAIASAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
             GK + Y   EE     L      +        KG+   N ++
Sbjct: 530 DLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 99/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   +++        +K V+ K             D   +D
Sbjct: 349 VVKDAFTLWLNQNVQSAEMLAEMAIASAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKH 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I+D      + +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTISDEDDQRTNAVMDMLLAKKRSEDRRNWLQE 621


>gi|90411890|ref|ZP_01219898.1| DNA topoisomerase IV subunit B [Photobacterium profundum 3TCK]
 gi|90327148|gb|EAS43520.1| DNA topoisomerase IV subunit B [Photobacterium profundum 3TCK]
          Length = 627

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/586 (37%), Positives = 325/586 (55%), Gaps = 14/586 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   SY+A SI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTEQSYNAGSIEVLNGLEPVRRRPGMY---TDTVRP-NHLGQEVIDNSVDEALAGHARKV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H  EG+S  E+I+ +LHAGGKF+  SY+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVIDDGRGMPVDIHPVEGVSGVELILCKLHAGGKFSNDSYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFS 183
           +SVVNALS  +++ +KR+G IY+++F +G   + L V G+ G    GT V F P +  F 
Sbjct: 117 ISVVNALSKRVEVSVKRDGQIYQIAFEHGDKVSELEVIGTCGRRAKGTRVHFWPDARYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+  L+  + L   ++I   +K + E   +   Y+ G++ ++    +    L
Sbjct: 177 SAKFSVTRLKSVLKAKAVLCPGLEIVFTNKIADET--VRWCYEDGLKDYLLEGVKGYTLL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     +    + D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEEPFVGVFTSQIEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL E P  A+ + +  +  +       RA     RK +    +LPGKLADCS++D 
Sbjct: 354 AFSLWLNERPQLAEQLAETCIANAH---RRMRASKKVVRKKIASGPALPGKLADCSQQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWEVSADQVLASQEVHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY KI ++ DAD DG HI TLL   F +   +L+  G +YI  PPLY
Sbjct: 469 LGIDPDSDDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFETLVRAGHVYIAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I   K + Y  DE+     L   S           KG+   N L+
Sbjct: 529 RIDLAKEVYYALDEDEKNGILDRLSTKRGKVNVQRFKGLGEMNPLQ 574



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 105/283 (37%), Gaps = 44/283 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ +   L + L    ++        SK V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNERPQLAEQLAETCIANAHRRMRASKKVVRKKIASGPALPGKLADCSQQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++   +  ++       LN             ++   +L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILN----------TWEVSADQVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S    G +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHDISVALGIDPDSDDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFETLVRA 517

Query: 712 DKIKITGP--------CS---LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWE 752
             + I  P              LD     G       ++G +++QR+KGLGEMN  QL E
Sbjct: 518 GHVYIAMPPLYRIDLAKEVYYALDEDEKNGILDRLSTKRGKVNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQE 794
           TT++P+TR L+++ I D ++ +++   L+G +  E RR ++Q+
Sbjct: 578 TTMDPNTRRLVQLTIDDDTKTNEMMDMLLGKKRAEDRRFWLQD 620


>gi|254038199|ref|ZP_04872257.1| DNA topoisomerase IV subunit B [Escherichia sp. 1_1_43]
 gi|300818795|ref|ZP_07099001.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 107-1]
 gi|226839823|gb|EEH71844.1| DNA topoisomerase IV subunit B [Escherichia sp. 1_1_43]
 gi|300528580|gb|EFK49642.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 107-1]
          Length = 630

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L++QE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAAQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 AAQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|50086499|ref|YP_048009.1| DNA topoisomerase IV subunit B [Acinetobacter sp. ADP1]
 gi|49532475|emb|CAG70187.1| topoisomerase IV subunit B [Acinetobacter sp. ADP1]
          Length = 626

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/640 (35%), Positives = 347/640 (54%), Gaps = 23/640 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+A+ I VT
Sbjct: 2   SQYTAQSLEVLSGLDPVRRRPGMY---TDTTRP-NHLAQEVIDNAVDEALAGHANKIRVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS  V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYQDGSLAVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALSS +++ ++R+GN+Y+M+F +G    PL V    +    +GT V F P +  F   
Sbjct: 118 VNALSSRVEVEVQRQGNLYKMAFEHGEPVAPLEVLAGKAPKRASGTTVHFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + +QI  +D+ + E  E     + G+  ++      +  L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLQIIYVDEINNETIEWQF--ENGLVDYLMDELEDRDILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  +  S + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFLSSGQVERASCEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E   VV +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASGVVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A  + +     S      + A+    RK ++   +LPGKLADC  +  ++
Sbjct: 355 ALWLNQNSEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREE 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+E L+  L                G ++ + LR        +D   +  
Sbjct: 530 DAGKDVFYALDDEELDAILSKLKTKNPQITRFKGLGEMNASQLRET-----TMDPDTRRL 584

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                    +  + +G+ +    ++ +      L  + N 
Sbjct: 585 ---VQLDLDDAHMTAGLLDKLLAKKRSADRKHWLEQKGNL 621



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 721 SLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             LD I S  + K   + R+KGLGEMNASQL ETT++PDTR L+++ + DA
Sbjct: 542 EELDAILSKLKTKNPQITRFKGLGEMNASQLRETTMDPDTRRLVQLDLDDA 592


>gi|294626653|ref|ZP_06705250.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599073|gb|EFF43213.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 629

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/588 (38%), Positives = 320/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F      F   
Sbjct: 118 VVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L  
Sbjct: 178 KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAEHELLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 DLFVGSLKKDTEIVDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGPAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRE 577



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 546 LLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML 605


>gi|152978653|ref|YP_001344282.1| DNA topoisomerase IV subunit B [Actinobacillus succinogenes 130Z]
 gi|150840376|gb|ABR74347.1| DNA topoisomerase IV, B subunit [Actinobacillus succinogenes 130Z]
          Length = 641

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 230/650 (35%), Positives = 337/650 (51%), Gaps = 22/650 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + YD+ +I +LKGL+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTVNDYDSINITVLKGLEPVQIRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGFASKI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V+DNGRG+P D+H  E IS  EVIMT+LHAGGKF+  +Y+ +GGLHGVG
Sbjct: 57  EVVLHSDQSLEVTDNGRGMPVDIHPTEKISGVEVIMTKLHAGGKFSNANYEFAGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           VSVVNALS  + + ++R G +Y ++F +G     L V G+ G  +TGT + F P+   F 
Sbjct: 117 VSVVNALSERVDVTVRRGGQVYHIAFADGEKVEELEVVGTCGRRNTGTSLHFKPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L S ++I   D+ +                  +  +    P 
Sbjct: 177 SDKFSVSRLRHLLRAKAVLCSGLEIKFTDQVNNTEESWCYQDGLSDYLSETAAEFVTVPE 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                  +GS + +         +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 TPFVGEFKGSGEAVEW-ALFWLPEGGELTTESYVNLIPTIQGGTHVNGLRKGLIDAMAEF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E           +  DD  +    VLS+KM D +F+ QTKE+L S E    V   V D 
Sbjct: 296 CEFHN-LLPKGVKLTADDLWDRCAYVLSLKMHDAQFAGQTKERLSSRESAVFVGGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL  +   AK++ +  ++++       RA     RK +    +LPGKLADCS++D +
Sbjct: 355 FSLWLNNNMEPAKLLAEMTINSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCSQQDLE 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      +++L S+E+  +  A+  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSEQVLGSEEVHNI--AVAL 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY 
Sbjct: 470 GIDPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEDGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DE   +  L   S           K  + +      ++ +   +  ++ 
Sbjct: 530 IDLGKEVYYALDENEKDAVLDRLSGKR-------GKPNVQRFKGLGEMNPSQLRETTMEP 582

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653
                 +   E+ + +      S Q   + L   L   LN    +  K+W
Sbjct: 583 STRRLVQLTYEEPIATESAVKNSQQNETIELMDML---LNKKRAEDRKNW 629



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 724 DTIFS--IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
           D +     G++G  ++QR+KGLGEMN SQL ETT+ P TR L+++   +    +
Sbjct: 546 DAVLDRLSGKRGKPNVQRFKGLGEMNPSQLRETTMEPSTRRLVQLTYEEPIATE 599


>gi|284923056|emb|CBG36149.1| topoisomerase IV subunit B [Escherichia coli 042]
          Length = 630

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/648 (34%), Positives = 342/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTHP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|254291773|ref|ZP_04962558.1| topoisomerase IV, subunit B [Vibrio cholerae AM-19226]
 gi|150422285|gb|EDN14247.1| topoisomerase IV, subunit B [Vibrio cholerae AM-19226]
          Length = 626

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/591 (37%), Positives = 323/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L GY
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGY 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKIQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G     L VTG+ G  +TGT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDT 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I   DK +            K  +   V    
Sbjct: 172 KYFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYI 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         Q      ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 LLPEEPFTGEFTAQTEAATWAV---IWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + G+D  +    VLSIKM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +  R    RA     RK +    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAHSR---MRASKKVVRKKIASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           + +D  ++ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 TVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS ++  LRY K+ I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQ 573



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   +      +   
Sbjct: 457 ASQEVHDISVALGIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 516

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 577 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRN 620


>gi|260771893|ref|ZP_05880811.1| topoisomerase IV subunit B [Vibrio metschnikovii CIP 69.14]
 gi|260613185|gb|EEX38386.1| topoisomerase IV subunit B [Vibrio metschnikovii CIP 69.14]
          Length = 643

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/590 (37%), Positives = 335/590 (56%), Gaps = 19/590 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L GY
Sbjct: 17  MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGY 67

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ KSY+ SGGL
Sbjct: 68  ATKVQVILHADQSLEVIDDGRGMPVDIHPEENVSGVELILCKLHAGGKFSNKSYQFSGGL 127

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +Y+++F +G   + L VTG+ G    GT V F P +
Sbjct: 128 HGVGISVVNALSKRVEVTVRRDGQVYDIAFEHGEKVSDLTVTGTCGRRNRGTSVHFWPEA 187

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F   +F+   L + LR  + L   ++I+  DK      E    Y+ G++ +++   + 
Sbjct: 188 RYFDSANFSVSRLVNNLRAKAVLCPGLEITFTDK--VNNNEYRWLYEDGLKDYLAEGVKG 245

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P   +   +  + + A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 246 YTLLPEEPFTGEFKTETEAANWAVIWLPEGGDLITESYVNLIPTPQGGTHVNGLRQGLLD 305

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    + G+D  +    VLSIKM DP+F+ QTKE+L S +  S V S
Sbjct: 306 AMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQTASFVAS 364

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL E P  A+++ +  +  +       RA     RK +    +LPGKL DCS
Sbjct: 365 VVKDSFSLWLNEKPQLAELLAEVCISNAH---RRMRASKKVVRKKIASGPALPGKLTDCS 421

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ++D  ++ELFLVEGDSAGGSAKQ R+RE QAI+PLRGKILN      D++L+SQE+  + 
Sbjct: 422 QQDLSRTELFLVEGDSAGGSAKQARNREFQAIMPLRGKILNTWEVSADQVLASQEVHDI- 480

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ++  GI  D+ D+  LRY K+ I+ DAD DG HI TLL   F R   +L+  G +Y+  
Sbjct: 481 -SVALGIDPDNDDLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVRAGHVYVAM 539

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           PPLY I  GK + Y  D+   +  +   S  +        KG+   N L+
Sbjct: 540 PPLYRIDCGKEVHYALDDNEKKAIIERLSSKKAKINVQRFKGLGEMNPLQ 589



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 730 GRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEP 787
            +K  I++QR+KGLGEMN  QL ETT++P+TR L+++ I D  + D++   L+G +  + 
Sbjct: 569 SKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDDKETDEMMDMLLGKKRADD 628

Query: 788 RREFIQEN 795
           RR ++Q N
Sbjct: 629 RRSWLQRN 636


>gi|332765507|gb|EGJ95725.1| DNA topoisomerase IV, B subunit [Shigella flexneri 2930-71]
          Length = 630

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 220/648 (33%), Positives = 340/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP    GTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQSGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +   +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQGLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 102/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   + 
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQG 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|302866555|ref|YP_003835192.1| DNA topoisomerase [Micromonospora aurantiaca ATCC 27029]
 gi|302569414|gb|ADL45616.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora aurantiaca ATCC
           27029]
          Length = 704

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/677 (35%), Positives = 349/677 (51%), Gaps = 43/677 (6%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y AD +  L+GLDAV+KRP MYIG TD   G+ H++ E+LDN+ DE + G+A  + V L+
Sbjct: 28  YGADDLTHLEGLDAVRKRPGMYIGSTDS-RGVGHLVNEILDNSTDEGVAGHATKVDVILH 86

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS  V D+GRGIPTD+H + GIS  E+++TRLHAGGKF    YK SGGLHGVG S VN
Sbjct: 87  ADGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 146

Query: 130 ALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTG--SAGNDTGTEV 173
           ALS    + ++R G ++ MSF +G+         D P      L + G    G  TGT +
Sbjct: 147 ALSRRFDVTVRRGGKVHAMSFRHGVPGVFDGDGPDAPFTPGPGLQIVGAMKRGQRTGTSI 206

Query: 174 TFLPSSDIFSVQDFNYDTLQHR--LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            +      F       DT   R  LR  +FL   V   L D+   EP E +  +  G+  
Sbjct: 207 RWWHDPRYFE-TGAALDTEAVRLKLRNTAFLVPGVAYRLRDETGEEPVEESFHFPDGLTD 265

Query: 232 FVSYLDRHKKPLMQSPIRIQGS------------------RDNISIDLAMRWNDGYHENV 273
            V +L       +   + + G                   +    +++A RW  GY   V
Sbjct: 266 MVEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEVEVAFRWGTGYERTV 325

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK-SFGSKKDKRSVIGDDCREGFTSVLSI 332
            CFTN I    GGTH  G   AL R +           K  + +   DD  EG T+V+ +
Sbjct: 326 ECFTNTIRNAHGGTHRKGFERALARTLADAARNARGLLKPKEDAPTLDDVLEGMTAVVHV 385

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE--AKIIVKKVLDASMVRD 390
           ++P+P+F+SQTK++L ++ +  V++  V   L +WLE+   +  A+ +++K++DA+ VR 
Sbjct: 386 RIPEPQFTSQTKDELSTAGITKVLQGLVEAHLKSWLEDRRTKAEARTVLQKIVDAARVRL 445

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
             ++ +D  RRK  L+ A++P KL DC     ++SELF+VEGDSA G+++  RS E QA+
Sbjct: 446 TQKQQKDAARRKTALEGAAMPAKLVDCRATGVERSELFIVEGDSALGTSRMARSSEYQAL 505

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LP+RGKILNV++A   ++L + E   ++  LG G G+  FD++ LRY +++IM DADVDG
Sbjct: 506 LPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRT-FDLSALRYGRVLIMADADVDG 564

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLS 569
           AHIRTLL+T F R M  LI  G LY   PPL+ I T+G++ Q V      E     + L 
Sbjct: 565 AHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPQTVYTYTQAEMEATVRKLE 624

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
           +  +               +  +                    +E A            E
Sbjct: 625 KTGKQIVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDDVEAAERILELLMGEKVE 684

Query: 630 INVSLASKLANRLNFIA 646
              +     A+R++  A
Sbjct: 685 PRRNWLIDSADRVDRDA 701



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 9/131 (6%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICNGDK-IKITGPCSL-----LDTIFSIGRK 732
            + +  ++Y R  I + R+      +  +   G     +           +  +   G++
Sbjct: 570 LLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPQTVYTYTQAEMEATVRKLEKTGKQ 629

Query: 733 GIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
            ++ + R+KGLGEM+A +LWETT+NP TR++ R+ + D   A+ +   LMG++VEPRR +
Sbjct: 630 IVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDDVEAAERILELLMGEKVEPRRNW 689

Query: 792 IQENSLPSALD 802
           + +++     D
Sbjct: 690 LIDSADRVDRD 700


>gi|118602571|ref|YP_903786.1| DNA topoisomerase IV subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567510|gb|ABL02315.1| DNA topoisomerase IV subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 627

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 230/640 (35%), Positives = 340/640 (53%), Gaps = 20/640 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+YD+ SI+IL GL+AV+KRP MY   T+ E   +H+  EV+DN++DE++ GYA  I+V 
Sbjct: 2   SNYDSSSIEILTGLEAVRKRPGMY---TETERP-NHLAQEVIDNSVDETIAGYASKISVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DGS +V DNGRG+P D+H +EG S  EVI+T+LHAGGKF+  SY+ SGGLHGVG+SV
Sbjct: 58  LYKDGSLSVEDNGRGMPVDIHPKEGKSGVEVILTKLHAGGKFSNDSYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++ IKR+   + ++F NG     L +T      +TGT V F P +  F    
Sbjct: 118 VNALSTLVEIWIKRDAKEHYITFSNGFKQTELEITRKVGKRNTGTTVKFKPDAQFFDTIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H LR  + L   ++++  ++   +       YK G++ ++S        L  +
Sbjct: 178 FSVTKLRHNLRSKAVLCPGLEVNFYNEI--DEATDKWIYKEGLKDYLSISLDVLDCLPPT 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENV--LCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           P  I    D   ++ ++ W   Y+ NV    + N IP   GGTH++GLRS L   +  + 
Sbjct: 236 PFIIDYKTDEQQLNCSLAW-TQYNTNVVAESYVNLIPTIGGGTHVNGLRSGLNEALKEFC 294

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  DD  +     LSIK+ DP+FS QTKE+L S E  S V + V D  
Sbjct: 295 EFRN-LIPKNIKLTPDDIWQKIAYTLSIKILDPQFSGQTKERLSSRESASFVANVVKDAF 353

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +H   A+ I +  +  +  R    +      RK ++   +LPGKL+DC+  D  +
Sbjct: 354 SLWLNQHTSIAEQIAQLAIANAQARLKTNKK---VIRKKIISGPALPGKLSDCTSTDLNQ 410

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +E+FLVEGDSAGGSAKQ R +E QAILPLRGKILN      +++L+S EI  +  A+G  
Sbjct: 411 TEVFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVDSEQVLASNEIHDIAIAIGLE 470

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              +  D++ LRY KI I+ DAD DGAHI TL+ T F +    LI  G +++  PPLY +
Sbjct: 471 PNSE--DLSGLRYGKICILADADSDGAHIATLICTLFVKHFQKLIQKGHIFVAMPPLYRV 528

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+   +  +       +         V     L       L+   ++ D 
Sbjct: 529 DAGKYVHYALDDNERDAIIKKIENKNKHVKI----QVQRFKGLGEMNPYQLRETTMLPDT 584

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                 T  +   +    +    ++        L  + N 
Sbjct: 585 RHLIQLTLDDPLQVFQTMDMLLSKKRAADRKKWLEEKGNL 624



 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 28/36 (77%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           I +QR+KGLGEMN  QL ETT+ PDTR L+++ + D
Sbjct: 559 IQVQRFKGLGEMNPYQLRETTMLPDTRHLIQLTLDD 594


>gi|270157507|ref|ZP_06186164.1| DNA topoisomerase IV B subunit [Legionella longbeachae D-4968]
 gi|289164107|ref|YP_003454245.1| Topoisomerase IV subunit B [Legionella longbeachae NSW150]
 gi|269989532|gb|EEZ95786.1| DNA topoisomerase IV B subunit [Legionella longbeachae D-4968]
 gi|288857280|emb|CBJ11107.1| Topoisomerase IV subunit B [Legionella longbeachae NSW150]
          Length = 627

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 343/652 (52%), Gaps = 28/652 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     Y A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE L G+
Sbjct: 1   MSEN-----YTAQAIEVLSGLEPVQRRPGMY---TDTTRP-NHLAQEVIDNSVDEVLAGF 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VTL+ DGS  V D+GRG+P DLH + G+S  EVIMTRLHAGGKF+ K+Y  SGGL
Sbjct: 52  ASHIRVTLHEDGSIEVEDDGRGMPVDLHPQLGLSGVEVIMTRLHAGGKFSDKNYSFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSS 179
           HGVGVSVVNALS  L + IKR G IY+MSF NG     L   G +   DTGT + F P+S
Sbjct: 112 HGVGVSVVNALSERLDVTIKRNGLIYQMSFANGDKLCELNEAGLTKKRDTGTTIRFWPNS 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F     +   L H LR  + L + + ++ I+K + E        + G+  +++     
Sbjct: 172 KYFDTTRISIKHLMHVLRAKAVLCTGLSMTFINKVNNEEMHWCY--EKGLIDYLNQSLPD 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P   +   D  ++D A+ W++  +      + N IP   GGTH++GLRS L  
Sbjct: 230 GDYLPEEPFIGEFKSDEATVDWALVWSNTANTGFSESYVNLIPTVQGGTHVNGLRSGLFD 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  DD  E    VLS+KM +P+F+ QTKE+L S ++ + V +
Sbjct: 290 AMAEFCELRNLLPRG-VKLTADDLWEPCQYVLSVKMKEPQFAGQTKERLSSRQISAFVSN 348

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  + WL +H  + + I    ++    +   ++A+    RK V    +LPGKLADC 
Sbjct: 349 VVKDAFALWLNQHRNQGEAIAALTIE--RAQKRLKQAKQ-VARKRVSQGPALPGKLADCL 405

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           + D  ++ELFLVEGDSAGGSAKQ R+++ QAILPLRGKILN       ++L+SQEI  + 
Sbjct: 406 QTDLSQAELFLVEGDSAGGSAKQARNKDFQAILPLRGKILNTWEVDSSQVLASQEIHDIS 465

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G D  D++ LRY K+ I+ DAD DGAHI TL+   F R    L+  G +++  
Sbjct: 466 VAIGVDPGSD--DLSGLRYGKLCILADADSDGAHIATLICALFLRHFKPLVQAGHVFVAM 523

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  D+E     L +            +    +       + +   I 
Sbjct: 524 PPLYRIDAGKEVYYALDDEEKNRILNHL---------TQTTRAKANVQRFKGLGEMNPIQ 574

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  PN  +         G      D  +N   AS     L      +E
Sbjct: 575 LRETTMDPNTRRLVQLTLGDQGDAEAIMDMMLNKKRASDRKVWLETKGNLAE 626



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           +L+ +    R   ++QR+KGLGEMN  QL ETT++P+TR L+++ + D   A+ +   
Sbjct: 547 ILNHLTQTTRAKANVQRFKGLGEMNPIQLRETTMDPNTRRLVQLTLGDQGDAEAIMDM 604


>gi|296104690|ref|YP_003614836.1| DNA topoisomerase IV subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059149|gb|ADF63887.1| DNA topoisomerase IV subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 630

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/644 (34%), Positives = 340/644 (52%), Gaps = 19/644 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D  +   +        G+  ++         L +
Sbjct: 178 RFSVSRLTHLLKAKAVLCPGVEITFKDNVNNTEQSWCY--ADGLNDYLCEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFVGNFTGDTEAVDWALLWLPEGGELLTESYVNLIPTMLGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 TLWLNQNVQAAEMLAEMAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ NG +Y+  PPLY I
Sbjct: 470 IDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE     L      +        KG+   N ++        +D   +  
Sbjct: 530 DLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ---LRETTLDPNTRRL 586

Query: 605 YPNHDKTFIEQ--AVISGVFNCESDQEINVSLASKLANRLNFIA 646
                    EQ    +  +   +   E   +   +  +  +  A
Sbjct: 587 VQLTISDEDEQQTNAMMDMLLAKKRSEDRRNWLQEKGDMADIEA 630



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 99/285 (34%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFTLWLNQNVQAAEMLAEMAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKN 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q + +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTISDEDEQQTNAMMDMLLAKKRSEDRRNWLQE 621


>gi|21242463|ref|NP_642045.1| DNA topoisomerase IV subunit B [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|325924935|ref|ZP_08186364.1| DNA topoisomerase IV subunit B [Xanthomonas perforans 91-118]
 gi|21107909|gb|AAM36581.1| topoisomerase IV subunit B [Xanthomonas axonopodis pv. citri str.
           306]
 gi|325544658|gb|EGD16012.1| DNA topoisomerase IV subunit B [Xanthomonas perforans 91-118]
          Length = 629

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/588 (38%), Positives = 320/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQVEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F      F   
Sbjct: 118 VVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L  
Sbjct: 178 KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAEHELLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 DLFVGSLKKDTEIVDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRE 577



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 546 LLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML 605


>gi|78047304|ref|YP_363479.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035734|emb|CAJ23425.1| topoisomerase IV subunit B [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 673

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/588 (38%), Positives = 320/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 46  NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQVEV 101

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 102 TLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVS 161

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F      F   
Sbjct: 162 VVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 221

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L  
Sbjct: 222 KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAEHELLPA 279

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 280 DLFVGSLKKDTEIVDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 339

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 340 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 398

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 399 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 455

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 456 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 515

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 516 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 573

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 574 VGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRE 621



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 590 LLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML 649


>gi|289669614|ref|ZP_06490689.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 562

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/554 (40%), Positives = 311/554 (56%), Gaps = 13/554 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQVEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKFN ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F      F   
Sbjct: 118 VVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L  
Sbjct: 178 KFNVRALRHLLRAKAVLCPGLTVKLHDEATDEQDSWYF--ENGLRDYLKGEMAEHEMLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 ELFVGSLKKDTEIVDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E    D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAALDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVTSGSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL 559
            GK + Y  DEE  
Sbjct: 530 VGKQVFYALDEEEK 543


>gi|169634797|ref|YP_001708533.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii SDF]
 gi|169153589|emb|CAP02766.1| topoisomerase IV subunit B [Acinetobacter baumannii]
          Length = 627

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/641 (35%), Positives = 352/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I+ ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + + V   S      + A+    RK ++   +LPGKLADC  +  ++
Sbjct: 355 ALWLNQHAEIAMQLAEMV--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREE 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+E LE  L N        +  +    I++      ++     +  +   
Sbjct: 530 DIGKDVHYALDDEELETILKN--------VKGNKNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++        L  + N 
Sbjct: 582 TRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGNL 622



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 721 SLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             L+TI    +  K   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 542 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 593


>gi|320321905|gb|EFW78001.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 634

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 234/646 (36%), Positives = 335/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGVSVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK + E  E             S  D  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSTNEKVEWHYEDGLRSYLQDSVSDFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFAGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         F   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|260557877|ref|ZP_05830090.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii ATCC
           19606]
 gi|260408668|gb|EEX01973.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 627

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/641 (35%), Positives = 351/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I+ ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PVFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  ++
Sbjct: 355 ALWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREE 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+E LE  L N        +  +    I++      ++     +  +   
Sbjct: 530 DIGKDVHYALDDEELETILKN--------VKGNKNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++        L  + N 
Sbjct: 582 TRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGNL 622



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 721 SLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             L+TI    +  K   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 542 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 593


>gi|169794326|ref|YP_001712119.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AYE]
 gi|213159099|ref|YP_002321097.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii AB0057]
 gi|215481883|ref|YP_002324065.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii
           AB307-0294]
 gi|301345700|ref|ZP_07226441.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB056]
 gi|301596077|ref|ZP_07241085.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB059]
 gi|332850131|ref|ZP_08432518.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6013150]
 gi|332872976|ref|ZP_08440937.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6014059]
 gi|169147253|emb|CAM85112.1| topoisomerase IV subunit B [Acinetobacter baumannii AYE]
 gi|213058259|gb|ACJ43161.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii AB0057]
 gi|213985902|gb|ACJ56201.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii
           AB307-0294]
 gi|322509788|gb|ADX05242.1| Topoisomerase IV subunit B [Acinetobacter baumannii 1656-2]
 gi|323519801|gb|ADX94182.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730980|gb|EGJ62286.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6013150]
 gi|332738820|gb|EGJ69686.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6014059]
          Length = 627

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/641 (35%), Positives = 351/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I+ ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  ++
Sbjct: 355 ALWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREE 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+E LE  L N        +  +    I++      ++     +  +   
Sbjct: 530 DIGKDVHYALDDEELETILKN--------VKGNKNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++        L  + N 
Sbjct: 582 TRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGNL 622



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 721 SLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             L+TI    +  K   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 542 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 593


>gi|188991959|ref|YP_001903969.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733719|emb|CAP51924.1| Topoisomerase IV subunit B [Xanthomonas campestris pv. campestris]
          Length = 673

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/588 (38%), Positives = 322/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 46  NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQVEV 101

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 102 TLYKDGSCEVSDDGRGMPVDMHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVS 161

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +GI  + L V G+    +TGT + F      F   
Sbjct: 162 VVNALSTKVELFIKREGSEHRMEFRDGIAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 221

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++      ++ L  
Sbjct: 222 KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--EDGLRDYLKGEMADRELLPA 279

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 280 DLFAGSLKKDTEIVDWAAAWVPEGELTQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 339

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 340 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 398

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 399 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 455

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 456 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 515

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 516 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 573

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 574 VGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRE 621



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 590 LLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML 649

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+++++ 
Sbjct: 650 LAKKRAGD----RKQWLET 664


>gi|56461054|ref|YP_156335.1| DNA topoisomerase IV subunit B [Idiomarina loihiensis L2TR]
 gi|56180064|gb|AAV82786.1| DNA topoisomerase IV subunit B [Idiomarina loihiensis L2TR]
          Length = 630

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/565 (39%), Positives = 321/565 (56%), Gaps = 14/565 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y +DSI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V 
Sbjct: 2   TDYKSDSIEVLNGLEPVQRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHAKSLLVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S   +D+GRG+P D+H EEG+   E+IM++LHAGGKF+ K+Y+ SGGLHGVG+SV
Sbjct: 58  LHPDQSLETTDDGRGMPVDIHPEEGVPGVELIMSKLHAGGKFSNKNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  ++L IKR+G +YEM++ NG   + L VTG+    +TGT V F P    F    
Sbjct: 118 VNALSKRVELTIKRDGQVYEMAYENGDKVSELEVTGTVGKRNTGTRVHFWPDPQYFDSAK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H LR  + L   ++I+  +K        T FY+ G+  ++    +    L + 
Sbjct: 178 FSVTKLKHILRAKAVLCPGLKITFRNKIDDTE--DTWFYQDGLTDYLVEAVKDVPTLPEM 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     S     +D A+ W  +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 236 PFDGSFSSQTEGVDWAVTWLPEGGEGVSESYVNLIPTTLGGTHVNGLRQGLLEAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  E  + +LS KM DP+F+ QTKE+L S +  S V   V D  S
Sbjct: 296 FRNLLPRG-VKLTPEDVWERCSYILSTKMQDPQFAGQTKERLSSRQSASFVSGVVKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL EH  +A+++    +  +       +A     RK V    +LPGKL DCS ++P +S
Sbjct: 355 LWLNEHTDQAELLADVCISNAQ---RRLKASKKVVRKKVTQGPALPGKLTDCSSQEPGRS 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      +++L SQEI  +  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDPEQILGSQEIHDISVAVGVDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
                D++KLRY KI I+ DAD DG HI TLL   F +    L+ +G +++  PPLY + 
Sbjct: 472 NSV--DLDKLRYGKICILADADSDGLHIATLLCALFVKHFRPLVEHGHIFVAMPPLYRVD 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSE 570
            GK + Y  DE   +  L      +
Sbjct: 530 VGKEVFYALDEAEKQGILDRIEAEK 554



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  RKG +++QR+KGLGEMN   L ETT++P+TR L+++ I D    ++L   L
Sbjct: 546 ILDRIEAEKRKGKVNVQRFKGLGEMNPLTLRETTMDPNTRRLVQLTIDDGEVMEELMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    RR +++ 
Sbjct: 606 LAKKRAGD----RRTWLES 620


>gi|115381164|gb|ABI96231.1| DNA topoisomerase IV subunit B [Entomoplasma melaleucae]
          Length = 553

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 235/559 (42%), Positives = 341/559 (61%), Gaps = 13/559 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L G+A  I V L  +GS TV+DNGRG+PT +H   G
Sbjct: 1   GSTD-VRGLHHLVWEIVDNSIDEALAGHASEIDVVLEKNGSVTVTDNGRGVPTGMHA-TG 58

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SAAEVI + LHAGGKF    YK +GGLHGVG SVVNALSS  K+ I R+  I+E+ F N
Sbjct: 59  KSAAEVIFSILHAGGKFGDGGYKTAGGLHGVGSSVVNALSSKFKVTIYRDKKIHELEFEN 118

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G L  PL+  G+    TGT V FLP   IF V  FN+ T+  RL+E +FLNS+++I+L 
Sbjct: 119 GGKLKTPLIEIGNT-YKTGTVVNFLPDPKIFPVTKFNFSTISERLKESAFLNSNLKITLT 177

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D ++ +  E     + G+  F+  L     P +   I+I+G+   I +++A+++ + Y+E
Sbjct: 178 DAQTEKKIEYIF--ENGLHEFIKDLTEEFTP-ITDTIKIEGTNSKIEVEIALKYTEDYNE 234

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            +L F NN+   +GG H++G +S L R I  Y + S   K     +  +D REG T++++
Sbjct: 235 TILGFANNVKTSEGGAHITGFKSGLVRAINDYAKASKILKDKDPRLDSNDLREGLTAIVT 294

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+   ++  QTK KL + E +   ES   + ++ WL+E+ ++A  I++K L     R
Sbjct: 295 VKIPENLIQYEGQTKSKLGTIEAKGATESTTFNYMNFWLQENKIQATKIIEKALITRKAR 354

Query: 390 DAARRARDLTR--RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           D AR+AR   R  +        + GKL     R  + +EL+LVEG+SAGGSAK GR R  
Sbjct: 355 DEARKARQAVRDAKGKNTSRNKMLGKLTPAQGRKREMNELYLVEGNSAGGSAKSGRDRSF 414

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGK++N E+A+   ++ ++EI T+I A+G GIG D FD+    Y K+IIMTDAD
Sbjct: 415 QAILPLRGKVINSEKAKLVDLMKNEEINTIINAIGAGIGSD-FDVKDANYGKVIIMTDAD 473

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQ 566
            DGAHI+TLLLTFFFR M  LI    +++  PPLY +T      QYV DE  L + +   
Sbjct: 474 TDGAHIQTLLLTFFFRYMKELILAKHVFLALPPLYKLTYTDKKFQYVWDEIELANIMKES 533

Query: 567 SLSEEIELFCDSKGVISKN 585
               +I+ +     + +  
Sbjct: 534 KKKFDIQRYKGLGEMNADQ 552



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 68/211 (32%), Gaps = 5/211 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  +DE       +  +  +          +      +  +++   ++     
Sbjct: 344 IEKALITRKARDEARKARQAVRDAKGKNTSRNKMLGKLTPAQGRKREMNELYLVEGNSAG 403

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  + +++    ++   +N I       +     N 
Sbjct: 404 GSAKSGRDRSFQAILPLRGKVINSEKAKLVDLMKNEEINTIINAIGAGIGSDFDVKDANY 463

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGP 719
             ++           +      F F    + I +  +      +  L     K + +   
Sbjct: 464 GKVIIMTDADTDGAHIQTLLLTFFFRYMKELILAKHVFLALPPLYKLTYTDKKFQYVWDE 523

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
             L + I    +K   +QRYKGLGEMNA QL
Sbjct: 524 IELAN-IMKESKKKFDIQRYKGLGEMNADQL 553


>gi|260550166|ref|ZP_05824379.1| topoisomerase IV subunit B [Acinetobacter sp. RUH2624]
 gi|260406694|gb|EEX00174.1| topoisomerase IV subunit B [Acinetobacter sp. RUH2624]
          Length = 627

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/641 (35%), Positives = 351/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I+ ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  ++
Sbjct: 355 ALWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREE 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G L++  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLFVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+E LE  L N        +  +    I++      ++     +  +   
Sbjct: 530 DIGKDVHYALDDEELETILKN--------VKGNKNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++        L  + N 
Sbjct: 582 TRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGNL 622



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 721 SLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             L+TI    +  K   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 542 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 593


>gi|239502848|ref|ZP_04662158.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB900]
          Length = 627

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/641 (35%), Positives = 351/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I+ ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PVFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  ++
Sbjct: 355 ALWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREE 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G L++  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLFVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+E LE  L N        +  +    I++      ++     +  +   
Sbjct: 530 DIGKDVHYALDDEELETILKN--------VKGNKNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++        L  + N 
Sbjct: 582 TRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGNL 622



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 721 SLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             L+TI    +  K   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 542 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 593


>gi|292492462|ref|YP_003527901.1| DNA topoisomerase IV subunit beta [Nitrosococcus halophilus Nc4]
 gi|291581057|gb|ADE15514.1| DNA topoisomerase IV, B subunit [Nitrosococcus halophilus Nc4]
          Length = 628

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/566 (39%), Positives = 317/566 (56%), Gaps = 14/566 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + +Y+A +I++L GL+ V+KRP MY   TD +   +H+  EV+DN++DE++ G+A  I V
Sbjct: 2   SGNYNAAAIEVLTGLEPVRKRPGMY---TDTQRP-NHLAQEVIDNSVDEAIAGFATQIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ DGS +V D+GRG+P DLH EE +   EVI+TRLHAGGKF+ KSY+ +GGLHGVGVS
Sbjct: 58  VLHPDGSLSVGDDGRGMPVDLHPEEQLPGVEVILTRLHAGGKFSSKSYRFAGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS L++ I+R G  Y M+F NG   + L         +TGT + F P    F   
Sbjct: 118 VVNALSSRLEVWIRRNGCEYHMAFANGERISALRAVNKVGKRNTGTLLHFWPDPVFFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L   + +   +  + E   +   Y+ G+ A++         L +
Sbjct: 178 KFSVARLKHVLRAKAVLCPGLNVIFREAATGET--VNWCYQEGLLAYLRDELGETPRLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +   +   +  A+ W  +G       + N IP   GGTH++GLR+ L   I  + 
Sbjct: 236 QPFTGEMQGNTEEVCWALAWLPEGGEVVAESYVNLIPTPQGGTHVNGLRAGLLEAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +  + VLS+K+ DP+FS QTKE+L S E  S V   + D  
Sbjct: 296 EFRNLLPRG-VKLAPDDVWDRVSYVLSVKLLDPQFSGQTKERLSSRECASFVSGVIKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +H +  + I +  +  +       R      RK +    +LPGKLADC+ +D   
Sbjct: 355 SLWLNQHVITGEAIAELAISNAQ---RRLRQAKRVVRKRIQTGPALPGKLADCTSQDVSL 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQGR RE QAI+PLRGKILN       ++L SQE+  +  A+G  
Sbjct: 412 TELFLVEGDSAGGSAKQGRDREFQAIMPLRGKILNTWEVDPAQVLGSQEVHNVAIAVGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  +++ LRY KI I+ DAD DGAHI TLL   F R    L+  G +Y+  PPLY I
Sbjct: 472 PGSD--NLDGLRYGKICILADADSDGAHIATLLSALFLRHFRPLVEAGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSE 570
             GK + Y  DE   +  L   +  +
Sbjct: 530 DVGKHVFYALDEAERQGILDRIAAEK 555



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +   +G I++QR+KGLGEMN  QL ETT+ P+TR L+R+ +      D L  RL
Sbjct: 547 ILDRIAAEKIRGKINIQRFKGLGEMNPMQLRETTMAPETRRLVRLTVAPHDDTDQLLDRL 606

Query: 781 MGD-EVEPRREFIQENSLPSAL 801
           +       RR++++E    + L
Sbjct: 607 LSKRRAADRRQWLEERGNLAEL 628


>gi|294663738|ref|ZP_06729289.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606396|gb|EFF49590.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 629

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/588 (38%), Positives = 320/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F      F   
Sbjct: 118 VVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L  
Sbjct: 178 KFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAEHELLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 DLFVGSLKKDTEIVDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAVAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI  LRY K++I+ DAD DG HI TLL   F +  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--DITGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDEEEKTTLLDKIAREKIKGQISVTRFKGLGEMNPQQLRE 577



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG IS+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 546 LLDKIAREKIKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML 605


>gi|85713135|ref|ZP_01044168.1| DNA topoisomerase IV subunit B [Idiomarina baltica OS145]
 gi|85693051|gb|EAQ31016.1| DNA topoisomerase IV subunit B [Idiomarina baltica OS145]
          Length = 630

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/566 (38%), Positives = 309/566 (54%), Gaps = 16/566 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y +DSI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  ITV 
Sbjct: 2   TDYKSDSIEVLNGLEPVQRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHAKTITVV 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V+D+GRG+P D+H EE I   E+IM++LHAGGKF+ K+Y+ SGGLHGVG+SV
Sbjct: 58  LHKDQSLEVTDDGRGMPVDIHPEEKIPGVELIMSKLHAGGKFSNKNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  +++ I+R+  +YEM+F NG   + L VTG+    +TGT V F P    F    
Sbjct: 118 VNALSKRVEITIRRDSQVYEMAFENGDKVSELDVTGTCGKRNTGTRVHFWPDEQYFDSSK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLDRHKKPLM 244
           F+   L H LR  + L   + I  I+    E             +   V       +   
Sbjct: 178 FSVLKLTHLLRAKAVLCPGLTIRFINHVDGEETSWFYEDGLTDYLREAVEEYPTLPEAPF 237

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +      ++       +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 238 DGSFVSKTEAAEWAVTWL---PEGGEAVTESYVNLIPTALGGTHVNGLRQGLLEAMREFC 294

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  DD  E  + +LS+KM DP+F+ QTKE+L S +  S V   V D  
Sbjct: 295 EFRN-LTPRGVKLTPDDVWERCSYILSLKMEDPQFAGQTKERLSSRQSASFVSGVVKDSF 353

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL EH  +A+ + +  +  +       +A     RK V    +LPGKL DCS +D ++
Sbjct: 354 SLWLNEHTEQAEALAELCISNAQ---RRLKASKKVVRKKVTSGPALPGKLTDCSGQDSER 410

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      +++L+SQEI  +  A+G  
Sbjct: 411 SELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDPEQILASQEIHDISVAVGVD 470

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
                 D++KLRY+KI I+ DAD DG HI TLL   F +    L+ NG +++  PPLY I
Sbjct: 471 PNSV--DLDKLRYNKICILADADSDGLHIATLLCALFVKHFRPLVENGHIFVAMPPLYRI 528

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSE 570
             GK + Y  DE   +  L      +
Sbjct: 529 DVGKDVFYALDEGEKQGILDRIEAEK 554



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 7/83 (8%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +  G+K  I      LD I +  RKG +++QR+KGLGEMN   L ETT++P
Sbjct: 529 DVGKDVFYALDEGEKQGI------LDRIEAEKRKGKVNVQRFKGLGEMNPLTLRETTMDP 582

Query: 758 DTRSLLRVKITDASQADDLFSRL 780
           +TR L+++ I DA   ++L   L
Sbjct: 583 NTRRLVQLTIDDAEAMEELMDML 605


>gi|261342468|ref|ZP_05970326.1| DNA topoisomerase IV, B subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288315107|gb|EFC54045.1| DNA topoisomerase IV, B subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 630

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/644 (34%), Positives = 341/644 (52%), Gaps = 19/644 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDGSFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D  +   +        G+  ++         L +
Sbjct: 178 RFSVSRLTHLLKAKAVLCPGVEITFKDNVNNTEQTWCY--ADGLNDYLCEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     S D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFVGNFSGDTEAVDWALLWLPEGGELLTESYVNLIPTMLGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 TLWLNQNVQAAEMLAELAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ NG +++  PPLY I
Sbjct: 470 IDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVHVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L      +        KG+   N ++        +D   +  
Sbjct: 530 DLGKEVYYALTEEEKEGVLDQLKRKKGKPNVQRFKGLGEMNPMQ---LRETTLDPNTRRL 586

Query: 605 YPNHDKTFIEQ--AVISGVFNCESDQEINVSLASKLANRLNFIA 646
                    EQ    +  +   +   E   +   +  +  +  A
Sbjct: 587 VQLTISDEDEQQTNAMMDMLLAKKRSEDRRNWLQEKGDMADIEA 630



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 100/285 (35%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFTLWLNQNVQAAEMLAELAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKN 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVHVALPPLYRIDLGKEVYYALTEEEKEGVLDQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKI--TDASQADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I   D  Q + +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTISDEDEQQTNAMMDMLLAKKRSEDRRNWLQE 621


>gi|110806923|ref|YP_690443.1| DNA topoisomerase IV subunit B [Shigella flexneri 5 str. 8401]
 gi|110616471|gb|ABF05138.1| DNA topoisomerase IV subunit B [Shigella flexneri 5 str. 8401]
          Length = 630

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/648 (34%), Positives = 341/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EE + A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEERVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|165976673|ref|YP_001652266.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876774|gb|ABY69822.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 637

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/638 (35%), Positives = 335/638 (52%), Gaps = 20/638 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+IMT+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHADNSLEVIDNGRGMPVDIHSTEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+ +D  +                  +  +    P 
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTINFVDHINNNSETWYYEDGLSDYLSEALKEFECLPN 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                 +    + +S  L     +G       + N IP   GGTH++GLR+ L + +  +
Sbjct: 237 PPFIGDVISETEAVSWALT-WLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVEF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D 
Sbjct: 296 CEIHN-LLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDLN 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVAL 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS  + +LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSDSLEELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLYR 529

Query: 544 ITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           I  GK    Y  DE   E  L               K  + +      ++ +   +  + 
Sbjct: 530 IDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTMD 582

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                  +  +++  ++     ++ + +++ LA K A 
Sbjct: 583 PSTRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAE 620



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 16/96 (16%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +   A
Sbjct: 540 ALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDVA 599

Query: 774 D-------DLFSRLMGDE-VEPRREFIQENSLPSAL 801
           +       ++   L+  +  E R++++Q     + L
Sbjct: 600 EENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAEL 635


>gi|68138687|gb|AAY86001.1| GyrB [Burkholderia cenocepacia]
          Length = 627

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 275/631 (43%), Positives = 389/631 (61%), Gaps = 20/631 (3%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALSSWL+L ++R+G    M F  G+              +P++VTG    + GT
Sbjct: 1   GVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ 
Sbjct: 60  EVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 178 LRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LP
Sbjct: 238 VRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS
Sbjct: 298 GKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           ++I TL+TALG GIG+D +++ KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  
Sbjct: 358 EQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIER 417

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L    
Sbjct: 418 GYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELA 477

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
              L    +I      +D   +E AV+ GV    S++    + A  L   L+  A K+E 
Sbjct: 478 RSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEASTEASAKALHAALHDEALKNEV 536

Query: 652 S----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +        + V+R   G     V++     +   +     +N  +        +
Sbjct: 537 RVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVI 596

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738
                 + +    S +  + +   + +S QR
Sbjct: 597 KRGERSMAVADFKSAMKWLLADAERNVSKQR 627


>gi|307252887|ref|ZP_07534776.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859676|gb|EFM91700.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 637

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/638 (35%), Positives = 335/638 (52%), Gaps = 20/638 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+IMT+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHADNSLEVIDNGRGMPVDIHSTEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+ +D  +                  +  +    P 
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTINFVDHINNNSETWYYEDGLSDYLSEALKEFECLPN 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                 +    + +S  L     +G       + N IP   GGTH++GLR+ L + +  +
Sbjct: 237 PPFIGDVISETEAVSWALT-WLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVEF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D 
Sbjct: 296 CEIHN-LLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVAL 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS  + +LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSDSLEELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLYR 529

Query: 544 ITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           I  GK    Y  DE   E  L               K  + +      ++ +   +  + 
Sbjct: 530 IDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTMD 582

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                  +  +++  ++     ++ + +++ LA K A 
Sbjct: 583 PSTRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAE 620



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 16/96 (16%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +   A
Sbjct: 540 ALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDVA 599

Query: 774 D-------DLFSRLMGDE-VEPRREFIQENSLPSAL 801
           +       ++   L+  +  E R++++Q     + L
Sbjct: 600 EENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAEL 635


>gi|331009741|gb|EGH89797.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 634

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 232/646 (35%), Positives = 334/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H  +  + L   + +S  DK + E  E             S  D  
Sbjct: 176 KYFDTPKFSVSRLKHVPKAKAVLCPGLLVSFEDKSTNEKVEWHYEDGLRSYLQDSVSDFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFAGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         F   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254039899|gb|ACT56695.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 686

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/656 (35%), Positives = 359/656 (54%), Gaps = 18/656 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++   + +YDA SI+IL+GL+ V+ RP MYIG TD E  LHH+  EV+DNA+DE + GYA
Sbjct: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-EKALHHLFSEVIDNAMDEVIAGYA 94

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           ++I V+L+ +G  TV DNGRGIP + H +    S  E+I+T LHAGGKF+  +Y++SGGL
Sbjct: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L + + R+  I+   F  GI  +PL       N  GT +TF P   
Sbjct: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISL-----IDKRSPEPREITMFYKGGIEAFVS 234
           IF     F+   L    +  ++L+  V+        I ++   P +   ++ GG++ ++ 
Sbjct: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274

Query: 235 YLDRHKKPLMQSPIRIQGSR---DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
               ++  +       +  +      +++ A+ W +  +  +  + N I   +GGTH SG
Sbjct: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESG 333

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR ALTR I  Y E +   +    S+I DD       +LS+ + +P F+ QTK KLVS +
Sbjct: 334 LRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            +  VE+ + D    +L ++P+EA  +++ V++ S  R   R+ R+   RK  +    LP
Sbjct: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +K+ ++
Sbjct: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           Q+I  L+ ALG    +  +    LRY K+IIMTDADVDGAHI +LLLTFF+++M  LI  
Sbjct: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
             L++I PPL+ IT+G    Y  DEE  +  L       + ++       +    L + +
Sbjct: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL-GEMLASQL 628

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            +   +D   +          +     +     +            +  R +FI +
Sbjct: 629 KE-TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 7/168 (4%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
            ++ + +  +  ++   +       + ++      V    +      F +   Y  I   
Sbjct: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570

Query: 696 RIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWE 752
            +      +  +      +          +L+     G+  I + R+KGLGEM ASQL E
Sbjct: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630

Query: 753 TTLNPDTRSLLRVKI-TD---ASQADDLFSRLMGDEVEPRREFIQENS 796
           T ++ + R+LLRV+I  D        D  ++LMG + + R +FIQE +
Sbjct: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678


>gi|302132290|ref|ZP_07258280.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 634

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 233/646 (36%), Positives = 335/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E  E             S  +  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKIEWHYEDGLRSYLQDSVTEFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFSGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK V    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRVTQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         +   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDYAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDYAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|94983847|gb|ABF50628.1| DNA topoisomerase IV subunit B [Spiroplasma chinense]
          Length = 554

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 234/559 (41%), Positives = 337/559 (60%), Gaps = 12/559 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L G    I VTL  DGS TV DNGRG+P  +HK   
Sbjct: 1   GSTDS-RGLHHLVWEIVDNSIDEALAGVCTEINVTLEKDGSVTVKDNGRGVPIGMHKGSN 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  E+I + LHAGGKF    YK SGGLHGVG SVVNALSS  K+ I R+G I  + F N
Sbjct: 60  KSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVTIHRDGLISTIKFNN 119

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G L +PL   G     TGT V FLP   +FS   F++ T+  RL+E + LNS ++I+L 
Sbjct: 120 GGKLSSPLKQIG-TSKVTGTMVNFLPDETMFSTTKFSFSTISERLKESALLNSGLKITLK 178

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+RS +  E     + G+  FV+ L   +K  + +P+ I+G    I +++A+ + + + E
Sbjct: 179 DERSDKYVEYLF--ENGLTEFVNELKGDQKA-LSNPVLIKGIDSQIEVEIALTYTNDFSE 235

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N++ F NN+   DGGTH++G ++ L + +  Y +     K+  + +   D REG  ++++
Sbjct: 236 NIMGFANNVKTSDGGTHITGFKTGLLKALNEYGKSQNIIKEKDKKLDSTDIREGLIAIVT 295

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+   ++  QTK KL +SE R   E       S WL+E+   A +I++K L A   R
Sbjct: 296 VKVPENLIQYEGQTKGKLGTSEARFACERITEQNFSFWLQENKTIAILIIEKALLARKAR 355

Query: 390 DAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           D AR+AR   R +K      ++ GKL     ++   +ELFLVEGDSAGGSAK GR ++ Q
Sbjct: 356 DEARKARQAVRDQKAKSKGKTMLGKLTPAQGKNKLNNELFLVEGDSAGGSAKSGRDKKFQ 415

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+ +   +L ++EI T+I A+G GIG D FDI  + Y KIIIMTDAD 
Sbjct: 416 AILPLRGKVINAEKTKLIDLLKNEEITTIINAIGAGIGSD-FDIEDINYGKIIIMTDADT 474

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL--QYVKDEESLEDYLINQ 566
           DGAHI+TLLLTFF+R M  LI N  +YI  PPL+ +T+       Y+  E+ L +Y+   
Sbjct: 475 DGAHIQTLLLTFFYRYMKELITNKNVYIAMPPLFKVTQSNKKDFIYLWTEDELVEYMKKS 534

Query: 567 SLSEEIELFCDSKGVISKN 585
               +I+ +     + +  
Sbjct: 535 KNKVDIQRYKGLGEMNADQ 553



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 62/197 (31%), Gaps = 3/197 (1%)

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
            ++ +     ++ S+   +         KN L N +                  K     
Sbjct: 359 RKARQAVRDQKAKSKGKTMLGKLTPAQGKNKLNNELFLVEGDSAGGSAKSGRDKKFQAIL 418

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQF 675
            +   V N E  + I++    ++   +N I       +     N   ++           
Sbjct: 419 PLRGKVINAEKTKLIDLLKNEEITTIINAIGAGIGSDFDIEDINYGKIIIMTDADTDGAH 478

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKG 733
           +      F +    + I +  +      +  +  +  K  I       L++      +  
Sbjct: 479 IQTLLLTFFYRYMKELITNKNVYIAMPPLFKVTQSNKKDFIYLWTEDELVEY-MKKSKNK 537

Query: 734 ISMQRYKGLGEMNASQL 750
           + +QRYKGLGEMNA QL
Sbjct: 538 VDIQRYKGLGEMNADQL 554


>gi|299768369|ref|YP_003730395.1| DNA topoisomerase IV subunit B [Acinetobacter sp. DR1]
 gi|298698457|gb|ADI89022.1| DNA topoisomerase IV subunit B [Acinetobacter sp. DR1]
          Length = 627

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/641 (35%), Positives = 351/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTTRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I  ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  + 
Sbjct: 355 SLWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTRED 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPTLVEEGHLYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D++ LE  L N           +    I++      ++     +  +   
Sbjct: 530 DIGKDVHYALDDDELETILKNIK--------GNRNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPNHDKTFIEQAVI-SGVFNCESDQEINVSLASKLANRLNF 644
                +  ++ A   +G+ +    ++ +      L  + N 
Sbjct: 582 TRRLVQLDLDDAHFTAGLLDKLLAKKRSADRKQWLEQKGNL 622



 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           L+TI     G +   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 544 LETILKNIKGNRNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 593


>gi|157373918|ref|YP_001472518.1| DNA topoisomerase IV subunit B [Shewanella sediminis HAW-EB3]
 gi|157316292|gb|ABV35390.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 628

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 220/640 (34%), Positives = 339/640 (52%), Gaps = 15/640 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATKIDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEGI   E+I+T+LHAGGKF+  +Y+ SGGLHGVG+S
Sbjct: 58  ILHKDNSLEVIDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNDNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQ 185
           VVNALSS +++ ++R G +Y+M+F +G     LV TG+ G    GT V F P+   F  +
Sbjct: 118 VVNALSSRVEITVRRNGIVYDMAFEHGHKVEDLVETGTCGRRNSGTRVHFWPTPSYFDFE 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + L+  + L   ++I  ++K++ E  E     + G+  +++   +    L +
Sbjct: 178 NFSISKLVYLLKAKAVLCPGLKIKFVNKQTDEVLEWYY--ESGLTDYLTSSIKDALMLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P       +  ++D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFVGSLKGNLEAVDWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFRQGLLDSMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +  + +LS+KM DP+FS QTKEKL S +  + V   V D  
Sbjct: 296 EFRN-LIPRGIKLTPEDIWDRSSFILSVKMQDPQFSGQTKEKLSSRQSAAFVSGIVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  H  +A+ + +  ++ +  R  + +      RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNTHTEQAEALAEMCINNAQKRLKSAKK---VARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              D  +I++LRY KI I+ DAD DG HI TLL   F +    L+ +G +Y+  PPL+ +
Sbjct: 472 P--DCDNISELRYGKICILADADSDGLHIATLLCALFMKHYKVLVEHGHIYVAMPPLFRV 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   E  L   +  ++      ++           + +   +D   +  
Sbjct: 530 DVGKEVFYALDEAEKEGILDRIAAEKKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                        +  +   +       +      +  +F
Sbjct: 589 VQLTVDDAEATIALMDMLLAKKRSGDRKTWLETKGDLADF 628



 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ + DA     L  
Sbjct: 545 EGILDRIAAEKKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTVDDAEATIALMD 604

Query: 779 RLM-----GDEVEPRREFIQE 794
            L+     GD    R+ +++ 
Sbjct: 605 MLLAKKRSGD----RKTWLET 621


>gi|66043818|ref|YP_233659.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. syringae
           B728a]
 gi|302189665|ref|ZP_07266338.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. syringae
           642]
 gi|63254525|gb|AAY35621.1| Gram negative topoisomerase IV, subunit B [Pseudomonas syringae pv.
           syringae B728a]
          Length = 634

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 233/646 (36%), Positives = 335/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E  E             S  +  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYEDGLRSYLQDSVTEFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFTGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         F   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|54296715|ref|YP_123084.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Paris]
 gi|148360657|ref|YP_001251864.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Corby]
 gi|53750500|emb|CAH11894.1| Topoisomerase IV subunit B [Legionella pneumophila str. Paris]
 gi|148282430|gb|ABQ56518.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Corby]
          Length = 626

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/652 (36%), Positives = 342/652 (52%), Gaps = 29/652 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     Y A++I++L GL+ V++RP MY   TD     +H+  EV+DN++DE L G+
Sbjct: 1   MSEN-----YTAEAIEVLSGLEPVQRRPGMY---TDTTRP-NHLAQEVIDNSVDEVLAGF 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VTL+ DGS  V D+GRG+P DLH + G+S  EVIMTRLHAGGKF+ K+Y  SGGL
Sbjct: 52  ASRIIVTLHEDGSIEVEDDGRGMPVDLHPQLGLSGVEVIMTRLHAGGKFSDKNYSFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS  L + IKR G IY+M+F NG     L  TG     +TGT + F P+ 
Sbjct: 112 HGVGVSVVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNG 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F     +   L H LR  + L S + ++ I+K + E          G+  ++      
Sbjct: 172 KYFDTTKISVKHLTHVLRAKAVLCSGLSMTFINKITNEEMNWCYEQ--GLTDYLQQTLPE 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P       D  ++D A+ W+D  + N+   + N IP   GGTH++GLRS L  
Sbjct: 230 -DYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLFE 288

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            ++ + E      +    +  DD  E    VLSIKM +P+F+ QTKE+L S +   +V +
Sbjct: 289 AMSEFCELRNLLPRG-VKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D  + WL +H  + + I    ++    +   ++A+    RK V    +LPGKLADC 
Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIE--RAQKRLKQAKQ-VARKRVSQGPALPGKLADCL 404

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           + D  ++ELFLVEGDSAGGSAKQ R+++ QAILPLRGKILN       ++L+SQEI  + 
Sbjct: 405 QTDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDIS 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+  LRY KI I+ DAD DGAHI TL+   F R    L+  G +++  
Sbjct: 465 VAIGVDPGSS--DLEGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAM 522

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  D+E     + + S + + ++                + +   I 
Sbjct: 523 PPLYRIDAGKLIHYALDDEEKNRIIQHLSQTTKSKVNV---------QRFKGLGEMNPIQ 573

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  PN  +                D  +N   A+     L      +E
Sbjct: 574 LRETTMDPNTRRLVQLTLDDEEQTEAIMDMMLNKKRAADRKLWLETKGNLAE 625



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 37/58 (63%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           ++  +    +  +++QR+KGLGEMN  QL ETT++P+TR L+++ + D  Q + +   
Sbjct: 546 IIQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTRRLVQLTLDDEEQTEAIMDM 603


>gi|290474836|ref|YP_003467716.1| DNA topoisomerase IV subunit B [Xenorhabdus bovienii SS-2004]
 gi|289174149|emb|CBJ80936.1| DNA topoisomerase IV, subunit B [Xenorhabdus bovienii SS-2004]
          Length = 631

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 217/563 (38%), Positives = 318/563 (56%), Gaps = 12/563 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+A++I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MTQSSYNAEAIEVLSGLEPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKHI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EE +SA E+I+TRLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHSDQSLEVIDDGRGMPVDIHPEEKVSAVELILTRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+  +++++F +G     L V GS    +TGT V F P    F 
Sbjct: 117 ISVVNALSRRVEVTVRRDSQVHQIAFESGDKVQELEVIGSCGKRNTGTSVHFWPDESYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           +  F+   L H L+  + L   V+I   DK +   ++             +       P 
Sbjct: 177 IPRFSASRLTHLLKAKAVLCPGVEIVFKDKLAGTEQKWCYADGLTDYLLEAVNGLVTLPQ 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                 ++G  + +     +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 237 TPFVGVLRGDTEAVDW-ALLWLPEGGELLAESYVNLIPTIQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEFRNILPRG-VKLSADDIWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL +H  +A+ + +  + ++       RA     RK + +  +LPGKLADC+ +D K
Sbjct: 355 FSLWLNQHIQDAEQLAEMAIASAQ---RRMRAAKKVVRKKLTNGPALPGKLADCTSQDLK 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L+SQE+  +  ++  
Sbjct: 412 LTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY 
Sbjct: 470 GIDPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFLTLVKRGHVYMAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQ 566
           I  GK + Y  DE      L   
Sbjct: 530 IDLGKEVHYALDEGEKGAILERL 552



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 23/87 (26%)

Query: 727 FSIGRKGI------------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
              G KG             ++QR+KGLGEMN  QL ETTL+P+TR L+++ I D    D
Sbjct: 540 LDEGEKGAILERLSRKRGKPNVQRFKGLGEMNPIQLRETTLDPNTRRLVQLTIDD----D 595

Query: 775 ---DLFS---RLMGDE-VEPRREFIQE 794
              + FS    L+  +  E RR ++QE
Sbjct: 596 NYQETFSVMDMLLAKKRSEDRRNWLQE 622


>gi|254787783|ref|YP_003075212.1| DNA topoisomerase IV subunit B [Teredinibacter turnerae T7901]
 gi|237684233|gb|ACR11497.1| DNA topoisomerase IV, B subunit [Teredinibacter turnerae T7901]
          Length = 628

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 230/604 (38%), Positives = 326/604 (53%), Gaps = 21/604 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A+ I++L GLD VKKRP MY   TD     +H+  EV+DN++DE+L G+A  I VT
Sbjct: 2   ANYTAEDIEVLTGLDPVKKRPGMY---TDTNRP-NHLAQEVIDNSVDEALAGFARKIQVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S +V+D+GRG+P DLH E+     EVI++ LHAGGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 58  LHKDNSISVADDGRGMPVDLHPEQNKPGVEVILSTLHAGGKFSNKNYQFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L++ IKR+G +Y + F +G     L V  +    +TGT V FLP    F    
Sbjct: 118 VNALSKILEVTIKRDGQVYRIGFQSGDKSVDLHVVDTCGKRNTGTSVRFLPDPKYFDSPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H LR  + L   +++   D++S E    T +Y+ G+  +++   +  + L   
Sbjct: 178 FSVSRLRHVLRAKAVLCPGLEVVFTDEQSGET--DTWYYEDGLRDYLTAATQGWETLPAE 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     S    + D A++W  +G       + N IP   GGTH++GLR+ L   +  Y E
Sbjct: 236 PFVGSFSAATEAADWAVQWLPEGGEITQESYVNLIPTAQGGTHVNGLRTGLMEAMREYCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                      +  DD       VLS K+ DP+FS QTKE+L S E  + V     D  S
Sbjct: 296 IRN-LIPRGVKLAPDDIWANCCFVLSSKLADPQFSGQTKERLSSREAAAFVSGVAKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++  +   +    +  +       R+     RK V    +LPGKLADCS  DP   
Sbjct: 355 LWLNQNTDDGDKLADYCISNAQ---KRVRSSKKIARKKVTAGPALPGKLADCSSDDPAAG 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R R NQAI+PLRGKILN       ++L+SQE+  +  ALG   
Sbjct: 412 ELFLVEGDSAGGSAKQARDRVNQAIMPLRGKILNTWEVDSAEVLASQEVHDISVALGIDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D  ++  LRYHK+ I+ DAD DG HI TLL   F R  P+L+  G +++  PPL+ I 
Sbjct: 472 GSD--NLENLRYHKVCILADADSDGLHIATLLCALFVRHFPALVKAGHVFVAMPPLFRID 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRNF---IDDALKID 598
            G+ + Y  DE       +     +   +         G ++   LR     +D    + 
Sbjct: 530 IGQDVYYALDESEKQGILDRIAAEKKKGKVNVQRFKGLGEMNPMQLRETTMAVDTRRLVQ 589

Query: 599 KLIK 602
            +I+
Sbjct: 590 LVIE 593



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG +++QR+KGLGEMN  QL ETT+  DTR L+++ I        +   L
Sbjct: 546 ILDRIAAEKKKGKVNVQRFKGLGEMNPMQLRETTMAVDTRRLVQLVIEPGDDTHQIMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+E+++ 
Sbjct: 606 LAKKRSGD----RKEWLET 620


>gi|296106278|ref|YP_003617978.1| DNA topoisomerase IV subunit B [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648179|gb|ADG24026.1| DNA topoisomerase IV subunit B [Legionella pneumophila 2300/99
           Alcoy]
          Length = 626

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/652 (36%), Positives = 342/652 (52%), Gaps = 29/652 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     Y A++I++L GL+ V++RP MY   TD     +H+  EV+DN++DE L G+
Sbjct: 1   MSEN-----YTAEAIEVLSGLEPVQRRPGMY---TDTTRP-NHLAQEVIDNSVDEVLAGF 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VTL+ DGS  V D+GRG+P DLH + G+S  EVIMTRLHAGGKF+ K+Y  SGGL
Sbjct: 52  ASRIIVTLHEDGSIEVEDDGRGMPVDLHPQLGLSGVEVIMTRLHAGGKFSDKNYSFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS  L + IKR G IY+M+F NG     L  TG     +TGT + F P+ 
Sbjct: 112 HGVGVSVVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNG 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F     +   L H LR  + L S + ++ I+K + E          G+  ++      
Sbjct: 172 KYFDTTKISVKHLTHVLRAKAVLCSGLSMTFINKITNEEMNWCYEQ--GLTDYLQQTLPE 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P       D  ++D A+ W+D  + N+   + N IP   GGTH++GLRS L  
Sbjct: 230 -DYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLFE 288

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            ++ + E      +    +  DD  E    VLSIKM +P+F+ QTKE+L S +   +V +
Sbjct: 289 AMSEFCELRNLLPRG-VKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D  + WL +H  + + I    ++    +   ++A+    RK V    +LPGKLADC 
Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIE--RAQKRLKQAKQ-VARKRVSQGPALPGKLADCL 404

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           + D  ++ELFLVEGDSAGGSAKQ R+++ QAILPLRGKILN       ++L+SQEI  + 
Sbjct: 405 QTDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDIS 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+  LRY KI I+ DAD DGAHI TL+   F R    L+  G +++  
Sbjct: 465 VAIGVDPGSS--DLEGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAM 522

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  D+E     + + S + + ++                + +   I 
Sbjct: 523 PPLYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNV---------QRFKGLGEMNPIQ 573

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  PN  +                D  +N   A+     L      +E
Sbjct: 574 LRETTMDPNTRRLVQLTLDDEEQTEAIMDMMLNKKRAADRKLWLETKGNLAE 625



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 37/58 (63%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           ++  +    +  +++QR+KGLGEMN  QL ETT++P+TR L+++ + D  Q + +   
Sbjct: 546 IVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTRRLVQLTLDDEEQTEAIMDM 603


>gi|261253833|ref|ZP_05946406.1| topoisomerase IV subunit B [Vibrio orientalis CIP 102891]
 gi|260937224|gb|EEX93213.1| topoisomerase IV subunit B [Vibrio orientalis CIP 102891]
          Length = 626

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/589 (37%), Positives = 320/589 (54%), Gaps = 17/589 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A  + +L+GLD V+ RP MY   T+ E   +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAKDLSVLEGLDPVRHRPGMY---TETERP-NHLAQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H E+GIS  E+IMT+LHAGGKF+  +YK SGGL
Sbjct: 52  AKKIKVILHADQSLEVIDDGRGMPVDIHPEKGISGVELIMTKLHAGGKFSNDNYKFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R G I+E++F  G     L VTG+ G+ +TGT V F P  
Sbjct: 112 HGVGISVVNALSKRVEVTVRRGGEIHEIAFEGGNAVTELTVTGTCGHRNTGTAVHFWPDE 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L + LR  + L   ++I+  DK + E  +                   
Sbjct: 172 KYFDSYKFSALRLVNNLRAKAVLCPGLEITFSDKVNNEEHKWFYEDGLKDYLSEGVKGYE 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             P            +  +    +   +G       + N +P K GGTH++GLR  L   
Sbjct: 232 VLPAEPYIGEFTADTEMATW-AVIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLLDA 290

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    + GDD  +  + VLS+KM DP+F+ QTKE+L S +  + V   
Sbjct: 291 MREFCEFRNLLPRG-VKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSGV 349

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DCS 
Sbjct: 350 VKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDCSV 406

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI-- 464

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ++  GI  D+ +++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  P
Sbjct: 465 SVALGIDPDNDNLDSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMP 524

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           PL+ I  GK + Y  DE+  E  L   S  +        KG+   N L+
Sbjct: 525 PLFRIDCGKEVFYALDEDEKEGILERLSKKKAKINVQRFKGLGEMNPLQ 573



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D  Q  ++   L+G 
Sbjct: 548 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDNEQTMEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRHWLQSN 620


>gi|115499623|dbj|BAF33486.1| topoisomerase IV subunit B [Listonella anguillarum]
          Length = 627

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 218/591 (36%), Positives = 321/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L GY
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALRGY 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE IS  E+I  +LHAGGKF+ KSY+ SGGL
Sbjct: 52  ASKVQVILHEDQSLEVIDDGRGMPVDIHPEEKISGVELIFCKLHAGGKFSNKSYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G IYEM+F +G     L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQIYEMAFEHGNKVEELTVTGTCGRRNKGTSVHFWPDT 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+  DK +            K  +   V    
Sbjct: 172 SYFDSPNFSVTRLINNLRAKAVLCPGLEITFSDKVNNLEHRWYYEDGLKDYLAEGVKGYT 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         +    N ++   +   +G       + N IP   GGTH++ LR  L 
Sbjct: 232 LLPEEPFTGEFVAETEAANWAV---IWLPEGGEMITESYVNLIPTAQGGTHVNRLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + G+D  +  + VLS+KM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGEDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             + D  S WL E P  A+++ +  +  +       RA     RK +    +LPGKL DC
Sbjct: 348 GVIKDSFSLWLNEKPQLAELLAEVCIANAH---RRMRASKKVVRKKIASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  D+ D++ LRY KI I+ DAD DG HI TLL   F +   +L+  G +++ 
Sbjct: 465 --SVALGIDPDNDDLDGLRYGKICILADADSDGLHIATLLCALFTKHFRALVKAGHIFVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D+   E  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDAEKEGILERLSQKKAKINVQRFKGLGEMNPLQ 573



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 116/343 (33%), Gaps = 51/343 (14%)

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI--HNGFLYIIKPPLY--G 543
             F   +    + + +T  DV     R   +     Q P         L   +   +  G
Sbjct: 292 REFCEFRNLLPRGVKLTGEDVFD---RCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 349 VIKDSFSLWLNEKPQLAELLAEVCIANAHRRMRASKKVVRKKIASGPALPGKLTDCSVQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F  +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LSR--TEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  +    G +Y +I             +  +   +      +   
Sbjct: 457 ASQEVHDISVALGIDPDNDDLDGLRYGKICILADADSDGLHIATLLCALFTKHFRALVKA 516

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             I +  P              LD     G        +  I++QR+KGLGEMN  QL E
Sbjct: 517 GHIFVAMPPLYRIDCGKEVFYALDDAEKEGILERLSQKKAKINVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQE 794
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q 
Sbjct: 577 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQR 619


>gi|77456727|ref|YP_346232.1| DNA topoisomerase IV subunit B [Pseudomonas fluorescens Pf0-1]
 gi|77380730|gb|ABA72243.1| topoisomerase IV subunit B [Pseudomonas fluorescens Pf0-1]
          Length = 635

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/572 (39%), Positives = 322/572 (56%), Gaps = 13/572 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    + SY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MATPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  AKSIQVILHADHSLEVCDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGFKATDLQVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + IS  DK + E  E             +  +  
Sbjct: 176 KYFDSPKFSISRLKHVLKAKAVLCPGLLISFEDKGTGEKVEWHYEDGLRSYLVDAVSEFE 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P       + G+++ +     +   +G       + N IP + GGTH++GLR  L   
Sbjct: 236 RLPDAPFCGNLAGTKEAVEW-ALLWLPEGGTSVTESYVNLIPTEQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRSLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  +P     + +  +  +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNANPETGLALAELAISNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G +  D+++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAE--DMSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           PLY I  GK + Y  DE   +  L      ++
Sbjct: 529 PLYRIDLGKEIYYALDEAERDGILDRLVAEKK 560



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 11/80 (13%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI-TDASQADDLFSR 779
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ +  D ++  ++   
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLGGDFAETSEMMDM 610

Query: 780 LM-----GDEVEPRREFIQE 794
           L+     GD    R+ +++ 
Sbjct: 611 LLAKKRAGD----RKTWLES 626


>gi|307609486|emb|CBW98983.1| topoisomerase IV subunit B [Legionella pneumophila 130b]
          Length = 626

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/652 (36%), Positives = 342/652 (52%), Gaps = 29/652 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     Y A++I++L GL+ V++RP MY   TD     +H+  EV+DN++DE L G+
Sbjct: 1   MSEN-----YTAEAIEVLSGLEPVQRRPGMY---TDTTRP-NHLAQEVIDNSVDEVLAGF 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VTL+ DGS  V D+GRG+P DLH + G+S  EVIMTRLHAGGKF+ K+Y  SGGL
Sbjct: 52  ASRIIVTLHEDGSIEVEDDGRGMPVDLHPQLGLSGVEVIMTRLHAGGKFSDKNYSFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS  L + IKR G IY+M+F NG     L  TG     +TGT + F P+ 
Sbjct: 112 HGVGVSVVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNG 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F     +   L H LR  + L S + ++ I+K + E          G+  ++      
Sbjct: 172 KYFDTTKISVKHLTHVLRAKAVLCSGLSMTFINKITNEEMNWCYEQ--GLTDYLRQTLPE 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P       D  ++D A+ W+D  + N+   + N IP   GGTH++GLRS L  
Sbjct: 230 -DYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLFE 288

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            ++ + E      +    +  DD  E    VLSIKM +P+F+ QTKE+L S +   +V +
Sbjct: 289 AMSEFCELRNLLPRG-VKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D  + WL +H  + + I    ++    +   ++A+    RK V    +LPGKLADC 
Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIE--RAQKRLKQAKQ-VARKRVSQGPALPGKLADCL 404

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           + D  ++ELFLVEGDSAGGSAKQ R+++ QAILPLRGKILN       ++L+SQEI  + 
Sbjct: 405 QTDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDIS 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+  LRY KI I+ DAD DGAHI TL+   F R    L+  G +++  
Sbjct: 465 VAIGVDPGSS--DLEGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAM 522

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  D+E     + + S + + ++                + +   I 
Sbjct: 523 PPLYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNV---------QRFKGLGEMNPIQ 573

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  PN  +                D  +N   A+     L      +E
Sbjct: 574 LRETTMDPNTRRLVQLTLDDEEQTEAIMDMMLNKKRAADRKLWLETKGNLAE 625



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 37/58 (63%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           ++  +    +  +++QR+KGLGEMN  QL ETT++P+TR L+++ + D  Q + +   
Sbjct: 546 IVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTRRLVQLTLDDEEQTEAIMDM 603


>gi|190150573|ref|YP_001969098.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263918|ref|ZP_07545522.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915704|gb|ACE61956.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870783|gb|EFN02523.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 637

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 229/638 (35%), Positives = 335/638 (52%), Gaps = 20/638 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+IMT+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHTDNSLEVIDNGRGMPVDIHSTEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+ +D  +                  +  +    P 
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTINFVDHINNNSETWYYEDGLSDYLSEALKEFECLPN 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                 +    + +S  L     +G       + N IP   GGTH++GLR+ L + +  +
Sbjct: 237 PPFIGDVISETEAVSWALT-WLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVEF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D 
Sbjct: 296 CEIHN-LLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVAL 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS  + +LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSDSLEELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLYR 529

Query: 544 ITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           I  GK    Y  DE   E  L               K  + +      ++ +   +  + 
Sbjct: 530 IDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTMD 582

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                  +  +++  ++     ++ + +++ LA K A 
Sbjct: 583 PSTRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAE 620



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 16/96 (16%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +   A
Sbjct: 540 ALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDVA 599

Query: 774 D-------DLFSRLMGDE-VEPRREFIQENSLPSAL 801
           +       ++   L+  +  E R++++Q     + L
Sbjct: 600 EENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAEL 635


>gi|71737102|ref|YP_272846.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482433|ref|ZP_05636474.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289628173|ref|ZP_06461127.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649095|ref|ZP_06480438.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298484936|ref|ZP_07003034.1| Topoisomerase IV subunit B [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|71557655|gb|AAZ36866.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160490|gb|EFI01513.1| Topoisomerase IV subunit B [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320330990|gb|EFW86964.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330865872|gb|EGH00581.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330984582|gb|EGH82685.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 634

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/646 (36%), Positives = 335/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK + E  E             S  D  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSTNEKVEWHYEDGLRSYLQDSVSDFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFAGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         F   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|91794568|ref|YP_564219.1| DNA topoisomerase IV subunit B [Shewanella denitrificans OS217]
 gi|91716570|gb|ABE56496.1| DNA topoisomerase IV subunit B [Shewanella denitrificans OS217]
          Length = 628

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/632 (35%), Positives = 334/632 (52%), Gaps = 15/632 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H+EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHSDNSLEVTDDGRGMPVDIHQEEGMSGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+  +YEM+F NG     L VTG+ G  +TGT V F P    F   
Sbjct: 118 VVNALSKRVEITVRRDAQVYEMAFENGFKVEELTVTGTCGRRNTGTRVHFWPDPSYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +++   L + LR  + L   ++I   +K++ E  E     + G+  ++    +    L  
Sbjct: 178 NYSLTKLIYLLRAKAVLCPGLRIKFTNKQNGETHEWCY--ESGLTDYLQEAVKGSVLLPP 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P       D  + D A+ W  +G +     + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFVGSFKGDLEAADWAVTWLPEGGNSIFESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +  + VLS+KM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 296 EFRN-LVPRGLKLSPEDIWDKVSYVLSVKMQDPQFAGQTKEKLSSRQCAAFVSGLVRDSF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  H   A+ + +  + ++  R  A        RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNSHIELAEQLAELCISSAQKRLKAA---KKVARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              DS DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +YI  PPL+ I
Sbjct: 472 P--DSDDISELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEKGHVYIAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE      L   +  ++      ++           + +   +D   +  
Sbjct: 530 DIGKDVFYALDEGEKAGILDRITAEKKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                   ++   +  +   +           
Sbjct: 589 VQLTIDEPLQTDAMMDMLLAKKRSSDRKLWLE 620



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I +  Q D +   L
Sbjct: 547 ILDRITAEKKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDEPLQTDAMMDML 606


>gi|157148595|ref|YP_001455914.1| DNA topoisomerase IV subunit B [Citrobacter koseri ATCC BAA-895]
 gi|157085800|gb|ABV15478.1| hypothetical protein CKO_04422 [Citrobacter koseri ATCC BAA-895]
          Length = 630

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 217/584 (37%), Positives = 327/584 (55%), Gaps = 14/584 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+  +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDAQVYSIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  ++         L +
Sbjct: 178 RFSVSRLTHILKAKAVLCPGVEITFKDEVNNSEQRWCY--QDGLNDYLGEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 SLWLNQNVQSAELLAEMAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
             GK + Y   EE     L      +        KG+   N ++
Sbjct: 530 DLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 102/293 (34%), Gaps = 46/293 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNQNVQSAELLAEMAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +   
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKH 516

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQENSLPSALD 802
           TTL+P+TR L+++ I+D      + +   L+  +  E RR ++QE    + LD
Sbjct: 577 TTLDPNTRRLVQLTISDEDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDMADLD 629


>gi|315179146|gb|ADT86060.1| DNA topoisomerase IV subunit B [Vibrio furnissii NCTC 11218]
          Length = 626

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/653 (33%), Positives = 330/653 (50%), Gaps = 31/653 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L GY
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGY 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ATKVQVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +Y+++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYDIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPET 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F   +F+   L + LR  + L   ++I+  DK +            K  +   V    
Sbjct: 172 KYFDSPNFSVTRLINNLRAKAVLCPGLEITFSDKVNNNEYRWFYEDGLKDYLAEGVKGYT 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         +      ++   +   +G       + N IP   GGTH++GLR  L 
Sbjct: 232 LLPEEPFTGEFSAETEAATWAV---IWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + G+D  +    VLS+KM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSVKMQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRAAKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S++D  ++ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L SQE+  +
Sbjct: 405 SQQDLSRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSGDQVLGSQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS ++  LRY K+ I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDNLETLRYGKVCILADADSDGLHIATLLCALFTRHFSALVREGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
            PPLY I  GK + Y  D+   +  L   +  +                    + +   I
Sbjct: 523 MPPLYRIDCGKEVFYALDDNEKDAILERLAKKKAKVNV----------QRFKGLGEMNPI 572

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                   PN  +        +       D  +    A    N L    + +E
Sbjct: 573 QLRETTMDPNTRRLVQLTIDDAKATEEMMDMLLGKKRADDRRNWLQSNGDLAE 625



 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 119/344 (34%), Gaps = 51/344 (14%)

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI--HNGFLYIIKPPLY--G 543
             F   +    + + +T  DV     R   +     Q P         L   +   +  G
Sbjct: 292 REFCEFRNLLPRGVKLTGEDVFD---RCAYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        +K V+ K             D   +D
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMRAAKKVVRKKVASGPALPGKLTDCSQQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LSR--TELFLVEGDSAGGSAKQARDREFQAIMPLRGKILN----------TWEVSGDQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   +    S +   
Sbjct: 457 GSQEVHDISVALGIDPDSDNLETLRYGKVCILADADSDGLHIATLLCALFTRHFSALVRE 516

Query: 712 DKIKITGP--------CSLL--------DTIFS-IGRKG--ISMQRYKGLGEMNASQLWE 752
             I +  P          +         D I   + +K   +++QR+KGLGEMN  QL E
Sbjct: 517 GHIYVAMPPLYRIDCGKEVFYALDDNEKDAILERLAKKKAKVNVQRFKGLGEMNPIQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   +++   L+G +  + RR ++Q N
Sbjct: 577 TTMDPNTRRLVQLTIDDAKATEEMMDMLLGKKRADDRRNWLQSN 620


>gi|301510004|ref|ZP_07235241.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB058]
          Length = 627

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/641 (35%), Positives = 350/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I+ ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  ++
Sbjct: 355 ALWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREE 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+ QE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLAYQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+E LE  L N        +  +    I++      ++     +  +   
Sbjct: 530 DIGKDVHYALDDEELETILKN--------VKGNKNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++        L  + N 
Sbjct: 582 TRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGNL 622



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 721 SLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             L+TI    +  K   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 542 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 593


>gi|152999325|ref|YP_001365006.1| DNA topoisomerase IV subunit B [Shewanella baltica OS185]
 gi|151363943|gb|ABS06943.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS185]
          Length = 628

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/633 (35%), Positives = 328/633 (51%), Gaps = 15/633 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHTDNSLEVTDDGRGMPVDIHLEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y+++F NG     L  TG+ G  +TGT V F P +  F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELRPTGTCGRRNTGTRVHFWPDASYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + LR  + L   ++I   +K++ E  E     + G+  ++         L  
Sbjct: 178 NFSNSKLIYLLRAKAVLCPGLRIKFTNKQTNEVHEWFY--ESGLTDYLKAAIGDNLRLPD 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P          + D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFVGCFKGQLEAADWAITWLPEGGESIGESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +    +LS+KM +P+F+ QTKEKL S +  + V   V D  
Sbjct: 296 EFRN-LIPRGIKLSPEDIWDRAAFILSVKMQEPQFAGQTKEKLSSRQCAAFVSGVVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +   A+ + +  ++ +  R  A        RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNSNTELAESLAEMCINNAQSRLKAA---KKVARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              DS DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +YI  PPL+ I
Sbjct: 472 P--DSSDISELRYGKICILADADSDGLHIATLLCALFLKHYRILVEQGHVYIAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE      L   +   +      ++           + +   +D   +  
Sbjct: 530 DIGKEVYYALDEAERAGILDRIAAENKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                    E   +  +   +       +    
Sbjct: 589 VQLTIDDIEETDALMDMLLAKKRSPDRKNWLED 621



 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I D  + D L   L
Sbjct: 547 ILDRIAAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDIEETDALMDML 606

Query: 781 MGDEVEP-RREFIQE 794
           +  +  P R+ ++++
Sbjct: 607 LAKKRSPDRKNWLED 621


>gi|86148731|ref|ZP_01067006.1| DNA topoisomerase IV subunit B [Vibrio sp. MED222]
 gi|85833480|gb|EAQ51663.1| DNA topoisomerase IV subunit B [Vibrio sp. MED222]
          Length = 626

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 219/591 (37%), Positives = 331/591 (56%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A  +++L+GLD V+ RP MY   T+ E   +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAKDLEVLEGLDPVRHRPGMY---TETERP-NHLAQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V+D+GRG+P D+H E+GIS  E+I+T+LH+GGKF+  +YK SGGL
Sbjct: 52  AKKIKVVLHADQSLEVTDDGRGMPVDIHPEKGISGVELILTKLHSGGKFSNNNYKFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G ++E++   G     L VTG+ G+ +TGT V F P  
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVHEIALEGGHAVTDLTVTGTCGHRNTGTTVHFWPDP 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L + LR  + L   ++I+ +DK   E  +     + G++ +++   + 
Sbjct: 172 KYFDSSKFSVLRLINNLRAKAVLCPGLEITFVDKVGGEEHKWFY--EDGLKDYLAEGVKG 229

Query: 240 KKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              L + P         +  +    +   +G       + N +P K GGTH++GLR  L 
Sbjct: 230 YTLLPEEPYVGEFVAETEMANW-AIIWQPEGGDMITESYVNLVPTKQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+KM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK +    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEACIANAH---RRMRASKKVVRKKIASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  D+ D++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDNDDLSGLRYGKICILADADSDGLHIATLLCALFTRHFHALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D+   +  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDAEKDGVLERLSQKKAKINVQRFKGLGEMNPLQ 573



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRR 789
           +  I++QR+KGLGEMN  QL ETT++P+TR L+++ I D    +++   L+G +  + RR
Sbjct: 555 KAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDNEATNEMMDMLLGKKRADDRR 614

Query: 790 EFIQEN 795
            ++Q N
Sbjct: 615 TWLQTN 620


>gi|15803577|ref|NP_289610.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 EDL933]
 gi|12517608|gb|AAG58169.1|AE005533_2 DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           EDL933]
          Length = 630

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/648 (34%), Positives = 341/648 (52%), Gaps = 22/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  ++  ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEXNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             WL ++   A+++ +  + ++       RA     RK +    +LPGKLADC+ +D  +
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY KI I+ DAD DG HI TLL   F +   +L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y   EE  E  L       E       K  + +      ++     +  +   
Sbjct: 530 DLGKEVYYALTEEEKEGVL-------EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                +  I+        +   D  +    +    N L    + +E  
Sbjct: 583 TRRLVQLTIDDEDDQRT-DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 46/285 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 409 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ I D      D +   L+  +  E RR ++QE
Sbjct: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621


>gi|330886496|gb|EGH20237.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. mori str.
           301020]
          Length = 634

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/646 (36%), Positives = 335/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK + E  E             S  D  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSTNEKVEWHYEDGLRSYLQDSVSDFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFAGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMKPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         F   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEM   QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMKPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|157963372|ref|YP_001503406.1| DNA topoisomerase IV subunit B [Shewanella pealeana ATCC 700345]
 gi|157848372|gb|ABV88871.1| DNA topoisomerase IV, B subunit [Shewanella pealeana ATCC 700345]
          Length = 631

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/632 (34%), Positives = 333/632 (52%), Gaps = 15/632 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 5   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHASRIDV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 61  ILHADNSLEVIDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALSS +++ ++R   +YEM+F +G     L VTG+ G  +TGT V F P +  F   
Sbjct: 121 VVNALSSRVEITVRRNAEVYEMAFEHGEKVEDLHVTGTCGRRNTGTSVHFWPDASYFDSG 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + L+  + L   ++I  ++K++ E +E     + G+E ++    +    L +
Sbjct: 181 NFSISKLTYLLKAKAVLCPGLRIKFVNKQTNETQEWFY--ESGLEDYLRSSFKGVPTLPE 238

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + +  + D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 239 VPFVGSFAGNLEAADWAITWLPEGGEYLNESYVNLIPTPLGGTHVNGFRQGLLESMREFC 298

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +  T +LSIKM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 299 EFRNLMPRG-IKLTPEDIWDRSTFILSIKMQDPQFAGQTKEKLSSRQCAAFVSGIVRDAF 357

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +  +A+ +    ++ +       +A     RK +    +LPGKL DCS +DP +
Sbjct: 358 SLWLNTNTEQAEALADMCINNAQ---KRLKAAKKVARKRITSGPALPGKLTDCSGQDPMR 414

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 415 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCD 474

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
                 DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  PPL+ I
Sbjct: 475 PDSA--DISELRYGKICILADADSDGLHIATLLCALFMKHYRVLVEQGHIYVAMPPLFRI 532

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE      L   +  +       ++           + +   +D   +  
Sbjct: 533 DIGKDVFYALDEAEKNGILDRITAEKRKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 591

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                    +   +  +   +           
Sbjct: 592 VQLTIDDAEDTLALMDMLLAKKRSGDRKIWLE 623



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  RKG + + R+KGLGEMN  QL ETT++P+TR L+++ I DA     L   L
Sbjct: 550 ILDRITAEKRKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEDTLALMDML 609

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 610 LAKKRSGD----RKIWLET 624


>gi|115381166|gb|ABI96232.1| DNA topoisomerase IV subunit B [Mesoplasma syrphidae]
          Length = 552

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/558 (42%), Positives = 338/558 (60%), Gaps = 12/558 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L GYA  I V L  +GS TVSDNGRG+P  +H   G
Sbjct: 1   GSTD-GRGLHHLVWEIVDNSIDEALAGYATEINVVLEKNGSVTVSDNGRGVPIGMHA-TG 58

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
               EVI + LHAGGKF    YK SGGLHGVG SVVNALS   K+ I R+  I E+ F +
Sbjct: 59  KPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFKVTIHRDKQINEIEFKD 118

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G L  PLV TG+    TGT V FLP   IF+   F++ T+  RL+E + LNS +QI+L 
Sbjct: 119 GGKLAKPLVQTGNT-YKTGTTVNFLPDDSIFTTTKFSFTTIAERLKESALLNSGLQITLK 177

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+ + +   +   Y+ G++ FV  L    K  +  P+ ++G    I  ++ +++ + Y+E
Sbjct: 178 DETTDK--HVEYNYENGLQEFVRELGEDFK-KITDPVTVKGDVRRIEAEICLQYTEDYNE 234

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            VL F NN+   DGGTH++G ++ L R I  Y + +   K+ +  +  +D REG  ++++
Sbjct: 235 TVLGFANNVKTSDGGTHITGFKAGLARAINDYAKNTKILKEKEARLDSNDLREGLIAIVT 294

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+    +  QTK KL + + ++ VE    +  + WL E+ + A  IV+K L A   R
Sbjct: 295 VKIPEDLIEYEGQTKGKLGTPDAKAAVEQITYNFFNFWLTENKVPATKIVEKALLARRAR 354

Query: 390 DAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           + AR+AR   R  KG     S+ GKL     R    +EL+LVEGDSAGGSAK GR R  Q
Sbjct: 355 EEARKARQAIRDTKGKKQGRSMLGKLTPAQGRKKAINELYLVEGDSAGGSAKSGRDRTFQ 414

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+A+   ++ ++EI T+ITA+G GIG D F+I  + Y K+IIMTDAD 
Sbjct: 415 AILPLRGKVINSEKAKIADLMKNEEINTIITAIGAGIGSD-FEIADINYGKVIIMTDADT 473

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567
           DGAHI+TLLLTFFFR M  LI N  ++I  PPLY +T       Y+ DE+ L +Y  N  
Sbjct: 474 DGAHIQTLLLTFFFRYMKDLIVNKHIFIALPPLYKLTFSDHSFIYLWDEDELAEYSRNSK 533

Query: 568 LSEEIELFCDSKGVISKN 585
              EI+ +     + +  
Sbjct: 534 KKFEIQRYKGLGEMNADQ 551



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 3/165 (1%)

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645
             I++   ++           +    QA++     V N E  +  ++    ++   +  I
Sbjct: 388 KAINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKIADLMKNEEINTIITAI 447

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
                  +  +  N   ++           +      F F      I +  I      + 
Sbjct: 448 GAGIGSDFEIADINYGKVIIMTDADTDGAHIQTLLLTFFFRYMKDLIVNKHIFIALPPLY 507

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
            L  +            L       +K   +QRYKGLGEMNA QL
Sbjct: 508 KLTFSDHSFIYLWDEDELAEYSRNSKKKFEIQRYKGLGEMNADQL 552


>gi|148979399|ref|ZP_01815505.1| DNA topoisomerase IV subunit B [Vibrionales bacterium SWAT-3]
 gi|145961835|gb|EDK27128.1| DNA topoisomerase IV subunit B [Vibrionales bacterium SWAT-3]
          Length = 626

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 220/591 (37%), Positives = 331/591 (56%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A  +++L+GLD V+ RP MY   T+ E   +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAKDLEVLEGLDPVRHRPGMY---TETERP-NHLAQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V+D+GRG+P D+H E+GIS  E+I+T+LH+GGKF+  +YK SGGL
Sbjct: 52  AKKIKVVLHADQSLEVTDDGRGMPVDIHPEKGISGVELILTKLHSGGKFSNNNYKFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++REG ++E++  +G     L VTG+ G+   GT V F P  
Sbjct: 112 HGVGISVVNALSKRVEVTVRREGQVHEIALEHGKAVTELTVTGTCGHRNSGTSVHFWPDP 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L + LR  + L   ++I+  DK + E  +     + G++ +++   + 
Sbjct: 172 KYFDSSKFSTLRLINNLRAKAVLCPGLEITFSDKVNNEEHKWFY--EDGLKDYLAEGVKG 229

Query: 240 KKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              L + P         +  +    +   +G       + N +P K GGTH++GLR  L 
Sbjct: 230 YTLLPEEPYVGEFVAETEMANW-AIIWQPEGGDMITESYVNLVPTKQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+KM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEACIANAH---RRMRASKKVVRKKVASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  D+ D++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDNDDLSGLRYGKICILADADSDGLHIATLLCALFTRHFSALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D++  +  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDDEKDGVLERLSKKKSKINVQRFKGLGEMNPLQ 573



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D     ++   L+G 
Sbjct: 548 LERLSKKKSKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDNEATLEMMDMLLGK 607

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 608 KRADDRRTWLQTN 620


>gi|148654052|ref|YP_001281145.1| DNA topoisomerase IV subunit B [Psychrobacter sp. PRwf-1]
 gi|148573136|gb|ABQ95195.1| DNA topoisomerase IV subunit B [Psychrobacter sp. PRwf-1]
          Length = 629

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 219/589 (37%), Positives = 319/589 (54%), Gaps = 20/589 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A S+++L+GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I V 
Sbjct: 2   SNYTAQSLEVLEGLEPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKTIKVQ 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V D+GRG+PTD+H E   +  E+I+TRLHAGGKFN  +Y+VSGGLHGVG+SV
Sbjct: 58  LHNDGSLSVEDDGRGMPTDIHPEFKQTGIEIILTRLHAGGKFNTSNYQVSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPL-VVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS  +++ + R+G+ Y+++F NG     L     S     GT+V F      F    
Sbjct: 118 VNALSKRVEVTVWRDGSQYDIAFENGAPVTELVESVSSNKRKKGTKVRFWVDESFFDTPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H L+  + L + + I   D+ + +          G+  +++      + L   
Sbjct: 178 FSVKQLKHNLKAKAVLAAGLTIEFFDEINNDKVVWQF--ADGVVEYLNEQLDGLETLPPE 235

Query: 247 PIRI-----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P        +G R  ++  L+     G       + N IP   GGTH++GLR+ +   + 
Sbjct: 236 PFYFSYEAKEGERSGVTFALSWLPQGGTPIQ-ESYVNLIPTAQGGTHVNGLRTGILEALR 294

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + E      ++   + G+D  +G   +LS+K  +P+FS QTKE+L S E    V++   
Sbjct: 295 EFCEIHNLLPRN-VKLTGEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAGAVQAQAK 353

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL +H      I +     S      + A+    RK +    +LPGKLADC    
Sbjct: 354 DAFSLWLNQHADLGAQIAELA--ISKAGRRLKSAKK-VARKKITQGPALPGKLADCRGGV 410

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELFLVEGDSAGGSAKQ R R  QAILPLRGKILN      D +LSS+EI  +  A+
Sbjct: 411 RDGAELFLVEGDSAGGSAKQARDRHFQAILPLRGKILNTWEVSPDTVLSSREIHDIAIAI 470

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G      S D+++LRY K+ I+ DAD DG HI TL+   F +  P+L+  G L++  PPL
Sbjct: 471 GVDP--ASDDLSELRYDKVCILADADSDGLHIATLICALFVKHFPALVDAGHLFVAMPPL 528

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y I  GK + Y  DE  LE  L N   +++         G +S   LR 
Sbjct: 529 YRIDIGKEVHYALDESELEHILSNVPGNKKPQITRFKGLGEMSAEQLRE 577



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 11/79 (13%)

Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           L+ I S   G K   + R+KGLGEM+A QL ETT+NPDTR L+++ + D    + +   L
Sbjct: 546 LEHILSNVPGNKKPQITRFKGLGEMSAEQLRETTMNPDTRRLVQLDMDDMQLTNSVMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 606 LAKKRAGD----RKTWLES 620


>gi|28572427|ref|NP_789207.1| DNA topoisomerase IV subunit B [Tropheryma whipplei TW08/27]
 gi|28410558|emb|CAD66944.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27]
          Length = 662

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/644 (34%), Positives = 342/644 (53%), Gaps = 32/644 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS N     Y+AD I +L+GL AV+KRP MYIG TD   GL H ++E++DN++DE L G+
Sbjct: 1   MSSNT---DYNADDIALLEGLAAVRKRPGMYIGSTDNH-GLAHCLWEIIDNSVDEVLAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            +++ +TL+ D S +V D GRGIP D+  + G++  E++ T+LHAGGKF   +Y  SGGL
Sbjct: 57  GNVVNITLHGDNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLHAGGKFGTGAYFTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L + + R+G  + M F N +          A N TGT V F P   
Sbjct: 117 HGVGASVVNALSEKLSVEVDRDGMTWVMEFRNQVTSGLRSKCKIASNVTGTRVRFWPDPL 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +   ++L  R  + +FL   +++++ D+   +        +GG + FV +L   +
Sbjct: 177 IFGSAEICIESLHQRAMQTAFLVPGLRVNIEDRVLGKSSSYLF--EGGCKQFVEHLSAGE 234

Query: 241 ----------KPLMQSPIRIQGS---------RDNISIDLAMRWNDGYHENVLCFTNNIP 281
                     K      + +                 +D+A+ W + +  ++  F N I 
Sbjct: 235 LITDVLCIRGKGSFSEAVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNVIE 294

Query: 282 QKDGGTHLSGLRSALTRQI-TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              GGTH SG   AL + I  +   +S   K        +D   G T+V+S+K+P+P+F 
Sbjct: 295 TPKGGTHYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQFE 354

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLE--EHPLEAKIIVKKVLDASMVRDAARRARDL 398
            QTKE L +  V+ +V + V D L    E  ++  + + +++KV+     R AAR +R+ 
Sbjct: 355 GQTKEVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASRET 414

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            RRK  L+ +SLP KL DC   D  +SELF+VEGDSA G+A++ R+ E QA+LP+RGKIL
Sbjct: 415 QRRKNALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGKIL 474

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV++A     L++ E  ++I  +G G G + FDI + RY K+IIM+DADVDGAHIR LLL
Sbjct: 475 NVQKASVADALANAECASIIQVIGAGSGSN-FDIAQARYGKVIIMSDADVDGAHIRILLL 533

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T FFR M  +I +G ++   PPL+ +    S + +      E   +   LS   +   + 
Sbjct: 534 TLFFRYMQPMISSGRVFSALPPLHRVVVKNSNEKIYTRSDRE---LEMVLSRLKQEGLEH 590

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           +  I +      +D     +  +        +  +  A  +   
Sbjct: 591 REPIQRYKGLGEMDADQLAETTMDRSKRTLLRIRMSDAQQASDI 634



 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 6/178 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +     +    ++ A+ +  I   S  ++  +      ++      V    +    
Sbjct: 473 ILNVQKASVADALANAECASIIQVIGAGSGSNFDIAQARYGKVIIMSDADVDGAHIRILL 532

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-LLDTIFSIGRK-GIS--- 735
               F      I S R+      +  ++      KI       L+ + S  ++ G+    
Sbjct: 533 LTLFFRYMQPMISSGRVFSALPPLHRVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHRE 592

Query: 736 -MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
            +QRYKGLGEM+A QL ETT++   R+LLR++++DA QA D+F+ LMG++V PRREFI
Sbjct: 593 PIQRYKGLGEMDADQLAETTMDRSKRTLLRIRMSDAQQASDIFALLMGNDVAPRREFI 650


>gi|330899871|gb|EGH31290.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 634

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 231/646 (35%), Positives = 334/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    + SY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MATPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E  E             S  +  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYEDGLRSYLQDSVTEFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDGPFCGSFTGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         F   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|104783895|ref|YP_610393.1| DNA topoisomerase IV subunit B [Pseudomonas entomophila L48]
 gi|95112882|emb|CAK17610.1| topoisomerase IV subunit B [Pseudomonas entomophila L48]
          Length = 634

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/647 (36%), Positives = 342/647 (52%), Gaps = 16/647 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   S+Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASAYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALSS +++R+KR+GN Y+M+F +G   + L V GS    +TGT V F P  
Sbjct: 116 HGVGISVVNALSSQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFTPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + IS  DK + E   +   Y+ G+ +++      
Sbjct: 176 KYFDSPKFSISRLKHVLKAKAVLCPGLSISFEDKGTGEK--VEWHYEDGLRSYLVDSVSE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 234 FPRLPDEPFCGSLAGNKEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGLLD 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  E  + VLS+KM +P+FS QTKE+L S E  + V  
Sbjct: 294 AMREFCEFRNLLPRG-VKLAPEDVWERISFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL  HP     + +  +  +       +A     RK V    +LPGKLADC+
Sbjct: 353 VVKDAFSLWLNAHPELGMQLAELAISNA---GRRLKASKKVERKRVTQGPALPGKLADCA 409

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  + 
Sbjct: 410 GQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIA 469

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+++LRY K+ I+ DAD DG HI TLL   F +    L+  G +Y+  
Sbjct: 470 VAIGVDPGAT--DLSQLRYGKVCILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAM 527

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  DE   +  L      ++      ++           + +   +D
Sbjct: 528 PPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMD 586

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
              +               I  +   +       +      N    +
Sbjct: 587 PNTRRLVQLTLDDVQGTTEIMDMLLAKKRAGDRKNWLETKGNLAEVL 633



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVQGTTEIMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKNWLET 625


>gi|157964294|ref|YP_001499118.1| DNA topoisomerase IV subunit B [Rickettsia massiliae MTU5]
 gi|157844070|gb|ABV84571.1| DNA topoisomerase IV, B subunit [Rickettsia massiliae MTU5]
          Length = 662

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 220/657 (33%), Positives = 347/657 (52%), Gaps = 17/657 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + + +++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE++ G+A 
Sbjct: 13  NKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDS-NAMHHLVSEVLDNAMDEAVAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           IIT+ ++ D S T+ DNGRGIP D H +    SA EVI+T LH+GGKF+   Y  +GGLH
Sbjct: 72  IITIKMHHDHSITIFDNGRGIPIDHHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L++++ ++G +Y  S+  G     L+   ++    GT + F P  +I
Sbjct: 132 GVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTPDPEI 191

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLD 237
           F     FN   +    R  ++L   V I  + +            + +  G++ ++S   
Sbjct: 192 FSEKLHFNPKKIYELARSKAYLYRGVAIEWVCEVEVPSDIPKKALISFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPIRIQG----SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                ++             R  +   +  + ND     +  + N +P   GGTH  GL+
Sbjct: 252 TLDNLVIPGIFAGNIGSTPDRIKLEWAICWQNNDS-SAFIQSYCNTVPTPQGGTHEQGLK 310

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SA+ R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS+ V 
Sbjct: 311 SAILRGLKAYGEMIGNKKAA--NLTIEDILETASVVLSIFIAEPSFQGQTKEKLVSNGVS 368

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VE+ + D    +L      A  +++ V+  +  R + +  ++   RK       LPGK
Sbjct: 369 KPVENIIKDHFDHFLSRDKALATNLLEHVISIAEFRISKKNEKN-ISRKNATQKLRLPGK 427

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q 
Sbjct: 428 LADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQA 487

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
           I  L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G 
Sbjct: 488 IQDLEIALACGSLKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGH 546

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           LY+ KPPLY +T+     Y  DEE           + + ++       +    +   + +
Sbjct: 547 LYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGL-GEMMPAQLKE 605

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
              +    +       + F     I      +  ++    +  +   +++ I  + +
Sbjct: 606 -TTMHPEKRSLLKVTLEDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELD 661



 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K++       + ++      V    +      F F    K +    +      +  L  +
Sbjct: 501 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQS 560

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L D +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V +
Sbjct: 561 NKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTL 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            D    D +   LMG + E R +FI E +L       S LDI
Sbjct: 621 EDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELDI 662


>gi|54307668|ref|YP_128688.1| DNA topoisomerase IV subunit B [Photobacterium profundum SS9]
 gi|46912091|emb|CAG18886.1| putative topoisomerase IV, subunit B [Photobacterium profundum SS9]
          Length = 627

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/586 (37%), Positives = 321/586 (54%), Gaps = 14/586 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   SY+A SI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTEQSYNAGSIEVLNGLEPVRRRPGMY---TDTARP-NHLGQEVIDNSVDEALAGHARKV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  D S  V D+GRG+P D+H  EG+S  E+I+ +LHAGGKF+  SY+ SGGLHGVG
Sbjct: 57  EVILYADQSLEVIDDGRGMPVDIHPVEGVSGVELILCKLHAGGKFSNDSYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFS 183
           +SVVNALS  +++ +KR+G IY+++F +G   + L V G+ G    GT V F P +  F 
Sbjct: 117 ISVVNALSKRVEVSVKRDGQIYQIAFEHGDKVSELEVIGTCGRRAKGTRVHFWPDARYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+  L+  + L   ++I   DK + E        + G++ ++    +    L
Sbjct: 177 NAKFSVTRLKSVLKAKAVLCPGLEIVFTDKIADETIRWCY--EDGLKDYLLEGVKGYTLL 234

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     +    + D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 235 PEEPFIGVFTSQIEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-VKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL E P  A+ + +  +  +       RA     RK +    +LPGKLADCS++D 
Sbjct: 354 AFSLWLNERPQLAEQLAEVCIANAH---RRMRASKKVVRKKIASGPTLPGKLADCSQQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN      D++L+SQE+  +  ++ 
Sbjct: 411 NRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWEVSADQVLASQEVHNI--SIA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY KI ++ DAD DG HI TLL   F +   +L+  G +YI  PPLY
Sbjct: 469 LGIDPDSDDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFEALVRAGHVYIAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I   K + Y  DE      L   S           KG+   N L+
Sbjct: 529 RIDLAKEVYYALDEAEKNGILDRLSTKRGKVNVQRFKGLGEMNPLQ 574



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 100/283 (35%), Gaps = 44/283 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ +   L + L    ++        SK V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNERPQLAEQLAEVCIANAHRRMRASKKVVRKKIASGPTLPGKLADCSQQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++   +  ++       LN             ++   +L
Sbjct: 410 LNR--TELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILN----------TWEVSADQVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S    G +Y +I             +  +   ++     +   
Sbjct: 458 ASQEVHNISIALGIDPDSDDLSGLRYGKICVLADADSDGLHIATLLCALFMKHFEALVRA 517

Query: 712 DKIKITGP----CSLLDTI---FSIGRKG------------ISMQRYKGLGEMNASQLWE 752
             + I  P      L   +        K             +++QR+KGLGEMN  QL E
Sbjct: 518 GHVYIAMPPLYRIDLAKEVYYALDEAEKNGILDRLSTKRGKVNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQE 794
           TT++P+TR L+++ I D  + +++   L+  +  E RR ++Q+
Sbjct: 578 TTMDPNTRRLVQLTIDDDEKTNEMMDMLLNKKRAEDRRFWLQD 620


>gi|218708460|ref|YP_002416081.1| DNA topoisomerase IV subunit B [Vibrio splendidus LGP32]
 gi|218321479|emb|CAV17431.1| Topoisomerase IV subunit B [Vibrio splendidus LGP32]
          Length = 626

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 219/591 (37%), Positives = 331/591 (56%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A  +++L+GLD V+ RP MY   T+ E   +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAKDLEVLEGLDPVRHRPGMY---TETERP-NHLAQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V+D+GRG+P D+H E+GIS  E+I+T+LH+GGKF+  +YK SGGL
Sbjct: 52  AKKIKVVLHADQSLEVTDDGRGMPVDIHPEKGISGVELILTKLHSGGKFSNNNYKFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G ++E++   G     L VTG+ G+ +TGT V F P  
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVHEIALEGGHAVTDLTVTGTCGHRNTGTTVHFWPDP 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L + LR  + L   ++I+ +DK   E  +     + G++ +++   + 
Sbjct: 172 KYFDSSKFSTLRLINNLRAKAVLCPGLEITFVDKVGGEEHKWFY--EDGLKDYLAEGVKG 229

Query: 240 KKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              L + P         +  +    +   +G       + N +P K GGTH++GLR  L 
Sbjct: 230 YTLLPEEPYVGEFVAETEMANW-AIIWQPEGGDMITESYVNLVPTKQGGTHVNGLRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    + GDD  +  + VLS+KM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK +    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEACIANAH---RRMRASKKVVRKKIASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  D+ D++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDNDDLSGLRYGKICILADADSDGLHIATLLCALFTRHFHALVEAGHIYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  D+   +  L   S  +        KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDDAEKDGVLERLSQKKAKINVQRFKGLGEMNPLQ 573



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRR 789
           +  I++QR+KGLGEMN  QL ETT++P+TR L+++ I D    +++   L+G +  + RR
Sbjct: 555 KAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDNEATNEMMDMLLGKKRADDRR 614

Query: 790 EFIQEN 795
            ++Q N
Sbjct: 615 TWLQTN 620


>gi|330873813|gb|EGH07962.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 634

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/646 (35%), Positives = 335/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E  E             S  +  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKIEWHYEDGLRSYLQDSVTEFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPNEPFCGSFAGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         +   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDYAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDYAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|325123890|gb|ADY83413.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus PHEA-2]
          Length = 627

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/641 (35%), Positives = 349/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTTRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I  ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  + 
Sbjct: 355 ALWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTRED 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D++ LE  L N           +    I++      ++     +  +   
Sbjct: 530 DIGKDVHYALDDDELETILKNIK--------GNRNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++ +      L  + N 
Sbjct: 582 TRRLVQLDLDDVHLTAGLLDKLLAKKRSADRKQWLEQKGNL 622



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 2/49 (4%)

Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           L+TI     G +   + R+KGLGEMNA QL ETT++P+TR L+++ + D
Sbjct: 544 LETILKNIKGNRNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDD 592


>gi|54293674|ref|YP_126089.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Lens]
 gi|53753506|emb|CAH14961.1| Topoisomerase IV subunit B [Legionella pneumophila str. Lens]
          Length = 626

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 342/652 (52%), Gaps = 29/652 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     Y A++I++L GL+ V++RP MY   TD     +H+  EV+DN++DE L G+
Sbjct: 1   MSEN-----YTAEAIEVLSGLEPVQRRPGMY---TDTTRP-NHLAQEVIDNSVDEVLAGF 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VTL+ DGS  V D+GRG+P DLH + G+S  EVIMTRLHAGGKF+ K+Y  SGGL
Sbjct: 52  ASRIIVTLHEDGSIEVEDDGRGMPVDLHPQLGLSGVEVIMTRLHAGGKFSDKNYSFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS  L + IKR G IY+M+F NG     L  TG     +TGT + F P+ 
Sbjct: 112 HGVGVSVVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNG 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F     +   L H LR  + L S + ++ I+K + E          G+  ++      
Sbjct: 172 KYFDTTKISVKHLTHVLRAKAVLCSGLSMTFINKITNEEMNWCYEQ--GLTDYLRQTLPE 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P       D  ++D A+ W+D  + N+   + N IP   GGTH++GLRS L  
Sbjct: 230 -DYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLFE 288

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            ++ + E      +    +  DD  E    VLSIKM +P+F+ QTKE+L S +   +V +
Sbjct: 289 AMSEFCELRNLLPRG-VKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D  + WL +H  + + I    ++    +   ++A+    RK V    +LPGKLADC 
Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIE--RAQKRLKQAKQ-VARKRVSQGPALPGKLADCL 404

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           + D  ++ELFLVEGDSAGGSAKQ R+++ QAILPLRGKILN       ++L+SQEI  + 
Sbjct: 405 QTDLGQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDIS 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+  LRY KI I+ DAD DGAHI TL+   F R    L+  G +++  
Sbjct: 465 VAIGVDPGSS--DLEGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAM 522

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  D+E     + + S + + ++                + +   I 
Sbjct: 523 PPLYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNV---------QRFKGLGEMNPIQ 573

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  PN  +                D  +N   AS     L      +E
Sbjct: 574 LRETTMDPNTRRLVQLTLDDEEQTEAIMDMMLNKKRASDRKLWLETKGNLAE 625



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 37/58 (63%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           ++  +    +  +++QR+KGLGEMN  QL ETT++P+TR L+++ + D  Q + +   
Sbjct: 546 IVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTRRLVQLTLDDEEQTEAIMDM 603


>gi|293610546|ref|ZP_06692846.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826890|gb|EFF85255.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 627

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/641 (35%), Positives = 350/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTTRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I+ ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  + 
Sbjct: 355 ALWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTRED 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D++ LE  L N           +    I++      ++     +  +   
Sbjct: 530 DIGKDVHYALDDDELETILKNIK--------GNRNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++ +      L  + N 
Sbjct: 582 TRRLVQLDLDDVHLTAGLLDKLLAKKRSADRKQWLEQKGNL 622



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 2/49 (4%)

Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           L+TI     G +   + R+KGLGEMNA QL ETT++P+TR L+++ + D
Sbjct: 544 LETILKNIKGNRNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDD 592


>gi|28872077|ref|NP_794696.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213967903|ref|ZP_03396049.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384422|ref|ZP_07232840.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062286|ref|ZP_07253827.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato
           K40]
 gi|28855331|gb|AAO58391.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213927246|gb|EEB60795.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|330963729|gb|EGH63989.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331014588|gb|EGH94644.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 634

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/646 (35%), Positives = 335/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E  E             S  +  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKIEWHYEDGLRSYLQDSVTEFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFAGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         +   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDYAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDYAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|320538929|ref|ZP_08038605.1| DNA topoisomerase IV, subunit B [Serratia symbiotica str. Tucson]
 gi|320031089|gb|EFW13092.1| DNA topoisomerase IV, subunit B [Serratia symbiotica str. Tucson]
          Length = 631

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/634 (35%), Positives = 334/634 (52%), Gaps = 12/634 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + ++SY+AD+I++L GL+ +++RP MY   TD     +H+  EV+DN++DE+L  +A  I
Sbjct: 1   MTHTSYNADAIEVLSGLEPIRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALANHAKRI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  EVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ +KR+GN+Y ++F NG     L VTG+    +TGT V F P    F 
Sbjct: 117 ISVVNALSKRVEVNVKRDGNVYGIAFENGDKVQDLTVTGTCGKRNTGTSVHFWPDEQFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L H L+  + L   V+I  ID+ +   +              +       P 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIDFIDQVNNTEQRWCYQDGLTDYLMEAVNGLMTLPT 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G  + +     +   +        + N IP   GGTH++GLR  L   +  +
Sbjct: 237 APFVRNFAGDTEAVDW-ALLWLPEAGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D 
Sbjct: 296 CEFRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQAAEQLAELAISSAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  
Sbjct: 412 MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAI 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  D+ D+++LRY KI I+ DAD DG HI TLL   F R   SL+  G +Y+  PPLY 
Sbjct: 470 GIDPDNEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFSSLVKGGHVYVAMPPLYR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + YV DEE     L      +        KG+   N L+          + +  
Sbjct: 530 IDLGKEVFYVLDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQ 589

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
              N D      AV+  +   +  ++    L  K
Sbjct: 590 LTVNADNVVQTLAVMDMLLAKKRSEDRRNWLQDK 623



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 101/290 (34%), Gaps = 56/290 (19%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTSQD 409

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 410 LS--MTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  +      +Y +I             +  +   ++   S +  G
Sbjct: 458 ASQEVHDISVAIGIDPDNEDLSQLRYGKICILADADSDGLHIATLLCALFVRHFSSLVKG 517

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVAMPPLYRIDLGKEVFYVLDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRE 577

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRL--MGD------EVEPRREFIQE 794
           TTL+P+TR L+++ +     AD++   L  M D        E RR ++Q+
Sbjct: 578 TTLDPNTRRLVQLTVN----ADNVVQTLAVM-DMLLAKKRSEDRRNWLQD 622


>gi|330960110|gb|EGH60370.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 634

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 231/646 (35%), Positives = 335/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK + E  E             S  +  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKATGEKVEWHYEDGLRSYLQDSVTEFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFAGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         +   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDYAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDYAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|303273552|ref|XP_003056137.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462221|gb|EEH59513.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 629

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 236/579 (40%), Positives = 336/579 (58%), Gaps = 21/579 (3%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG+T    GLHH+++EVLDN++DE   G+A +ITV L  DG  +V D+GRGIPTD+H 
Sbjct: 1   MYIGNTS-TKGLHHLVWEVLDNSVDEIQAGHASVITVVLEPDGFVSVEDDGRGIPTDVHP 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
             G+S+ E ++T LHAGGKF      Y VSGGLHGVG+SVVNALS   ++ + + G ++ 
Sbjct: 60  ATGVSSLETVLTVLHAGGKFGGDESGYHVSGGLHGVGISVVNALSELCEVTVWKGGKVFT 119

Query: 148 MSFINGILDNPLVV--TGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNS 204
            +F  G     +       A    GT V F P   IF     F+ + +  R++EL+FLNS
Sbjct: 120 QAFSRGYAVADMTESFEPGADGKNGTRVRFKPDHQIFKEKASFDPNIIISRMKELAFLNS 179

Query: 205 SVQISLIDKRSPEPREIT-----MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           +  +          +        + + GG++ +V  L+   + L   PI  +   + + +
Sbjct: 180 TATLKFRIPVDVHKKMTRKKANILSFPGGLKDYVVDLNMGSETLH-DPITFRSEVEGVQV 238

Query: 260 DLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           + A++W  + + +  L + N+I   DGG+HL GL+ ALTR + +   K+   K    ++ 
Sbjct: 239 EGALQWTREAFTDTTLGYANSIRTSDGGSHLDGLKFALTRTVNAQARKAKLLKDGDSNLG 298

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           G+  REG ++VL++ +P P F  QTK +L + EVR VVE+ + + ++  LE +P   + I
Sbjct: 299 GEHVREGLSAVLAVWVPQPEFEGQTKTRLGNPEVRKVVEAVIGEQIAEHLEFYPSVLQSI 358

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
             K   A+   +AA+RAR+L RRK VL   SLPGKL+DCS  DP  SE+FLVEGDSAGGS
Sbjct: 359 FNKAQQAAKAAEAAKRARELVRRKSVLRSGSLPGKLSDCSNSDPDISEIFLVEGDSAGGS 418

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AKQGR R  QA+LPLRGKILNVER     M  + EI +++TALG G+  D FD + LRY 
Sbjct: 419 AKQGRDRRFQAVLPLRGKILNVERKDESSMYKNTEISSMVTALGLGLKGDDFDESALRYS 478

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-------GKSLQ 551
           KI+I+TDADVDGAHIRTLLLTF +R   +L   G +++  PPLY +          +S+ 
Sbjct: 479 KIVILTDADVDGAHIRTLLLTFLYRYQRALFERGKVFVAVPPLYKVEHTDGKGGGKRSIT 538

Query: 552 YVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y  DE  L   L +     +         G +    L N
Sbjct: 539 YCYDEVQLAKLLSSLPDDTKRSIQRFKGLGEMMPEQLWN 577



 Score =  133 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 116/330 (35%), Gaps = 44/330 (13%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLEDY 562
           D+++ G H+R  L       +P     G        P +  +      + + +       
Sbjct: 294 DSNLGGEHVREGLSAVLAVWVPQPEFEGQTKTRLGNPEVRKVVEAVIGEQIAEHLEFYPS 353

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID-----KLIKDFYPNHDKTFIEQAV 617
           ++    ++  +    ++      +L                    +  P+  + F+ +  
Sbjct: 354 VLQSIFNKAQQAAKAAEAAKRARELVRRKSVLRSGSLPGKLSDCSNSDPDISEIFLVEGD 413

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINNS 660
            +G    +       ++       LN   +     +                     + S
Sbjct: 414 SAGGSAKQGRDRRFQAVLPLRGKILNVERKDESSMYKNTEISSMVTALGLGLKGDDFDES 473

Query: 661 DILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSLI------CN 710
            +   +I   +     ++G+ I +    F  +Y+R    R +                  
Sbjct: 474 ALRYSKIV--ILTDADVDGAHIRTLLLTFLYRYQRALFERGKVFVAVPPLYKVEHTDGKG 531

Query: 711 GDKIKITG------PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
           G K  IT          LL ++    ++  S+QR+KGLGEM   QLW TTLNP++R L R
Sbjct: 532 GGKRSITYCYDEVQLAKLLSSLPDDTKR--SIQRFKGLGEMMPEQLWNTTLNPESRLLKR 589

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQE 794
           + + DA++ +  F  LM D+V PRR FI+E
Sbjct: 590 LTVDDAAEVNQTFQLLMSDKVAPRRAFIEE 619


>gi|307544310|ref|YP_003896789.1| DNA topoisomerase IV subunit B [Halomonas elongata DSM 2581]
 gi|307216334|emb|CBV41604.1| DNA topoisomerase IV subunit B [Halomonas elongata DSM 2581]
          Length = 626

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 237/639 (37%), Positives = 337/639 (52%), Gaps = 18/639 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A SI++L GL+ V+KRP MY   TD     +H+I EV+DN++DE+L G+A  I V 
Sbjct: 2   TQYSASSIEVLAGLEPVRKRPGMY---TDTSRP-NHLIQEVIDNSVDEALGGHAKAIAVR 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DG   VSD+GRG+P D+H E G+S  E+IMT+LHAGGKF+  SY+ SGGLHGVGVSV
Sbjct: 58  LFEDGGVEVSDDGRGMPIDIHPEHGVSGIELIMTKLHAGGKFSASSYRFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L++ + ++G+ + M+F +G   + L V GS A   TGT V F P +  F    
Sbjct: 118 VNALSRRLEVEVLKDGSRHHMAFEHGERASDLTVIGSAAKRATGTLVRFWPEASYFDSPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            +   L+H LR  + L   +Q++L++    E       ++ G+  +++      + L  S
Sbjct: 178 LSLTRLKHLLRAKAVLCPGLQVTLVEADGTES---VWQFEDGLRDYLAQATDGYEVLPAS 234

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     + +  ++D A++W  +G    +  + N IP   GGTH++GLRS +   +  + E
Sbjct: 235 PFVGHFADEEQAVDWAIQWLPEGGEPLLESYVNLIPTPLGGTHVNGLRSGMLEALREFCE 294

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  E  + VLS+KM +P+F+ QTKE+L S  V   V   V D  S
Sbjct: 295 YRSLLPRG-VKLTAEDLWERVSYVLSVKMLEPQFAGQTKERLSSRTVAGFVSGVVKDAFS 353

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL  H  + + + + V+ A+  R  + +      RK V    +LPGKLADCS +DP  S
Sbjct: 354 LWLNHHVDQGEALAELVISAAQRRQKSAKK---VARKKVTSGPALPGKLADCSGQDPASS 410

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN        +  SQE+  +  A+G   
Sbjct: 411 ELFLVEGDSAGGSAKQARQRETQAILPLRGKILNTWEVEAHDIYGSQEVHDIAVAIGMEP 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G D  D++KLRYHKI I+ DAD DG HI TLL   F R  P+L+  G +++  PPLY I 
Sbjct: 471 GSD--DLSKLRYHKICILADADSDGLHIATLLCALFVRHFPALVDAGHVFVAMPPLYRID 528

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE      L               KG+   + L+          + +    
Sbjct: 529 LGKEVFYALDESEKAAILRRLEGKRGTPNVQRFKGLGEMSPLQLRETTMAAETRRLVQLT 588

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                  +E      +   +       S      N    
Sbjct: 589 REVGDGTLEMM---DMLLAKKRASDRKSWLEDYGNLAEI 624



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 729 IGRKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
            G++G  ++QR+KGLGEM+  QL ETT+  +TR L+++ 
Sbjct: 550 EGKRGTPNVQRFKGLGEMSPLQLRETTMAAETRRLVQLT 588


>gi|52840928|ref|YP_094727.1| DNA topoisomerase IV subunit B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628039|gb|AAU26780.1| DNA topoisomerase IV subunit B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 626

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 238/652 (36%), Positives = 342/652 (52%), Gaps = 29/652 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N     Y A++I++L GL+ V++RP MY   TD     +H+  EV+DN++DE L G+
Sbjct: 1   MSEN-----YTAEAIEVLSGLEPVQRRPGMY---TDTTRP-NHLAQEVIDNSVDEVLAGF 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VTL+ DGS  V D+GRG+P DLH + G+S  EVIMTRLHAGGKF+ K+Y  SGGL
Sbjct: 52  ASRIIVTLHEDGSIEVEDDGRGMPVDLHPQLGLSGVEVIMTRLHAGGKFSDKNYSFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSVVNALS  L + IKR G IY+M+F NG     L  TG     +TGT + F P+ 
Sbjct: 112 HGVGVSVVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNG 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F     +   L H LR  + L S + ++ I+K + E          G+  ++      
Sbjct: 172 KYFDTTKISVKHLTHVLRAKAVLCSGLSMTFINKITNEEMNWYYEQ--GLTDYLLQTLPE 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P       D  ++D A+ W+D  + N+   + N IP   GGTH++GLRS L  
Sbjct: 230 -DYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLFE 288

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            ++ + +      +    +  DD  E    VLSIKM +P+F+ QTKE+L S +   +V +
Sbjct: 289 AMSEFCDLRNLLPRG-VKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + D  + WL +H  + + I    ++    +   ++A+    RK V    +LPGKLADC 
Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIE--RAQKRLKQAKQ-VARKRVSQGPALPGKLADCL 404

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           + D  ++ELFLVEGDSAGGSAKQ R+++ QAILPLRGKILN       ++L+SQEI  + 
Sbjct: 405 QTDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDIS 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+  LRY KI I+ DAD DGAHI TL+   F R    L+  G +++  
Sbjct: 465 VAIGVDPGSS--DLEGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAM 522

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  D+E     + + S + + ++                + +   I 
Sbjct: 523 PPLYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNV---------QRFKGLGEMNPIQ 573

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                  PN  +                D  +N   A+     L      +E
Sbjct: 574 LRETTMDPNTRRLVQLTLDDEEQTEAIMDMMLNKKRAADRKLWLETKGNLAE 625



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 37/58 (63%)

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           ++  +    +  +++QR+KGLGEMN  QL ETT++P+TR L+++ + D  Q + +   
Sbjct: 546 IVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTRRLVQLTLDDEEQTEAIMDM 603


>gi|297625214|ref|YP_003686977.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296920979|emb|CBL55516.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 680

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 257/559 (45%), Positives = 355/559 (63%), Gaps = 11/559 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D+  +  Y AD IQ+L+GL+AV+KRP MYIG T GE GLHH++ E++DN++DE+L GYAD
Sbjct: 30  DDSVDGEYGADEIQVLEGLEAVRKRPGMYIGST-GERGLHHLVREIVDNSVDEALAGYAD 88

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VTL   G C V DNGRGIP   H  E IS   +++T LHAGGKF    YKVSGGLHG
Sbjct: 89  SIEVTLLNGGGCRVVDNGRGIPVAEHPAEHISTLTLVLTVLHAGGKFGGGGYKVSGGLHG 148

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALSS     + R+G  +  SF  G    P+         TGT +TF PS+DIF
Sbjct: 149 VGSSVVNALSSRFDADVYRDGYHWHQSFTLGDPVAPVERLEETE-RTGTTITFYPSADIF 207

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMFYKGGIEAFVSYL 236
              DF+Y+TL    RE++FLN  ++I++ D+R+       +       +  G+  +V++L
Sbjct: 208 ETTDFSYETLATGFREIAFLNKGLRIAITDERTDHVDEDGKQLHDVFKFDNGLVDYVTFL 267

Query: 237 DRHKKPLMQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           + +++ +              + +++AM+WN  Y  ++  F N I  ++GGTH  G R+A
Sbjct: 268 NGNRETMTPVIDVEAHAPEVGMGVEVAMQWNTSYVTSLHTFANTINTREGGTHEEGFRAA 327

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  I  + E     KK +  V  DD REG T+++S+K+ +P+F  QTK +L ++E R  
Sbjct: 328 LTTTINKWGENWGLIKKREDRVSNDDIREGLTAIVSVKLVNPQFEGQTKTRLGNTEARGF 387

Query: 356 VESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           V+  VN+ L  W+E++P + K+IV K    AS    A +       RKG+L    LPGKL
Sbjct: 388 VQRAVNERLGDWMEQNPGDGKLIVRKAQAAASARIAARKARDMARNRKGLLGSGGLPGKL 447

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS  +P++ E+F+VEGDSAGGSAK GR+   QAILPLRGKILNVE+AR D+ L S+ I
Sbjct: 448 ADCSSNNPEECEIFIVEGDSAGGSAKGGRNPRIQAILPLRGKILNVEKARIDRALQSETI 507

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             +I+ALGTG+ ++ FDINKLRYHKI++M DADVDGAHIRTLLLT  FR MP LI  G++
Sbjct: 508 EAIISALGTGVHEE-FDINKLRYHKIVLMADADVDGAHIRTLLLTLLFRFMPELIDGGYV 566

Query: 535 YIIKPPLYGITRGKSLQYV 553
           Y+ +PPL+ +    +   +
Sbjct: 567 YLAQPPLFRLRWTNAPHEL 585



 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 4/87 (4%)

Query: 721 SLLDTIFSIGRKGIS---MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
           SL D     G+K  S   +QRYKGLGEM+A  LW TT++PD R LL+V + DA++AD  F
Sbjct: 594 SLRDKGLEAGKKLPSVNPIQRYKGLGEMDAQDLWTTTMDPDNRILLQVNLDDAARADQTF 653

Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803
           S LMG++VE RR FIQ N+     LD+
Sbjct: 654 SILMGEDVEERRRFIQRNAKDVRFLDV 680


>gi|289672548|ref|ZP_06493438.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. syringae
           FF5]
 gi|330939840|gb|EGH43074.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 634

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 231/646 (35%), Positives = 334/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    + SY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MATPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E  E             S  +  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYEDGLRSYLQDSVTEFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFTGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         F   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|164510814|emb|CAK18891.1| topoisomerase IV subunit B [Staphylococcus pseudintermedius]
          Length = 637

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 246/569 (43%), Positives = 352/569 (61%), Gaps = 14/569 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG TD   GLHH++YEV+DN++DE L GY + I VT+N D S TV+DNGRG+PT  H 
Sbjct: 1   MYIGSTDK-RGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTH- 58

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
             G    EVI T LHAGGKF Q  YK SGGLHGVG SVVNALS  L + I R+G I+E  
Sbjct: 59  RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLSVEIHRDGEIFEQQ 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQI 208
           F +G +    ++       TGT VTF P ++IF     FN++TL  RL+E +FL  +++I
Sbjct: 119 FAHGGVPQTKLIKKGKTKKTGTTVTFKPDAEIFKSATSFNFETLSERLQESAFLLQNLKI 178

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
           +L D+R  + R     Y+ GI+AFVSY++  K+ L    +  QG+ + I +D++ ++ND 
Sbjct: 179 TLEDRRVGKERSEVYHYEEGIKAFVSYVNEGKEVLHDVAL-FQGTANEIEVDVSFQYNDQ 237

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+++ F NN+  KDGGTH  G ++A+TR    Y  +    K   +++ G+D REG T+
Sbjct: 238 YSESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGNDIREGLTA 297

Query: 329 VLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           ++S+++P+   +F  QTK KL + E RS V++ V + L  +LEE    +K +VKK + A 
Sbjct: 298 IISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLVKKAIKAQ 357

Query: 387 MVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
             R+AAR+AR+   + +K       L GKL     ++ +K+EL+LVEGDSAGGSAK GR 
Sbjct: 358 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRD 417

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R+ QAILPLRGK++N E+AR + +  ++EI T+I  +G G+G D F++    Y++IIIMT
Sbjct: 418 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGND-FNLKDSNYNRIIIMT 476

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLE 560
           DAD DGAHI+ LLLTFFF+ M  L+  G +YI  PPLY +     + K + Y   +E LE
Sbjct: 477 DADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAWTDEELE 536

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRN 589
                      +       G ++ + L  
Sbjct: 537 KLQREMGKGF-VLQRYKGLGEMNPDQLWE 564



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 350 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 409

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       ++   +N 
Sbjct: 410 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLKDSNY 469

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717
           + ++           +      F F      + + R+      +  L        KI   
Sbjct: 470 NRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYA 529

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR+L+RV+I D  ++    
Sbjct: 530 WTDEELEKLQREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRV 589

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+V PRRE+I+ +
Sbjct: 590 STLMGDKVAPRREWIERH 607


>gi|164510811|emb|CAK18889.1| topoisomerase IV subunit B [Staphylococcus pseudintermedius]
          Length = 637

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 246/569 (43%), Positives = 352/569 (61%), Gaps = 14/569 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG TD   GLHH++YEV+DN++DE L GY + I VT+N D S TV+DNGRG+PT  H 
Sbjct: 1   MYIGSTDK-RGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTH- 58

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
             G    EVI T LHAGGKF Q  YK SGGLHGVG SVVNALS  L + I R+G I+E  
Sbjct: 59  RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLSVEIHRDGEIFEQQ 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQI 208
           F +G +    ++       TGT VTF P ++IF     FN++TL  RL+E +FL  +++I
Sbjct: 119 FAHGGVPQTKLIKKGKTKKTGTTVTFKPDAEIFKSATSFNFETLSERLQESAFLLQNLKI 178

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
           +L D+R  + R     Y+ GI+AFVSY++  K+ L    +  QG+ + I +D++ ++ND 
Sbjct: 179 TLEDRRVGKERSEVYHYEEGIKAFVSYVNEGKEVLHDVAL-FQGTANEIEVDVSFQYNDQ 237

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+++ F NN+  KDGGTH  G ++A+TR    Y  +    K   +++ G+D REG T+
Sbjct: 238 YSESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGNDIREGLTA 297

Query: 329 VLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           ++S+++P+   +F  QTK KL + E RS V++ V + L  +LEE    +K +VKK + A 
Sbjct: 298 IISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLVKKAIKAQ 357

Query: 387 MVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
             R+AAR+AR+   + +K       L GKL     ++ +K+EL+LVEGDSAGGSAK GR 
Sbjct: 358 QAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRD 417

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R+ QAILPLRGK++N E+AR + +  ++EI T+I  +G G+G D F++    Y++IIIMT
Sbjct: 418 RKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGMGND-FNLKDSNYNRIIIMT 476

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLE 560
           DAD DGAHI+ LLLTFFF+ M  L+  G +YI  PPLY +     + K + Y   +E LE
Sbjct: 477 DADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAWTDEELE 536

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRN 589
                      +       G ++ + L  
Sbjct: 537 KLQREMGKGF-VLQRYKGLGEMNPDQLWE 564



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    Q  ++               + +    S  +          ++   ++     
Sbjct: 350 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 409

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   ++ I       ++   +N 
Sbjct: 410 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGMGNDFNLKDSNY 469

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717
           + ++           +      F F      + + R+      +  L        KI   
Sbjct: 470 NRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYA 529

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG  +QRYKGLGEMN  QLWETT+NP+TR+L+RV+I D  ++    
Sbjct: 530 WTDEELEKLQREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRV 589

Query: 778 SRLMGDEVEPRREFIQEN 795
           S LMGD+V PRRE+I+ +
Sbjct: 590 STLMGDKVAPRREWIERH 607


>gi|157803444|ref|YP_001491993.1| DNA topoisomerase IV subunit B [Rickettsia canadensis str. McKiel]
 gi|157784707|gb|ABV73208.1| DNA topoisomerase IV subunit B [Rickettsia canadensis str. McKiel]
          Length = 662

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/655 (34%), Positives = 345/655 (52%), Gaps = 15/655 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            + N+SY A  I++L+GL+ V+KRP MYIG  D  S +HH++ EVLDNA+DE++ GYA I
Sbjct: 14  KLVNNSYSAKDIEVLEGLEPVRKRPGMYIGGIDS-SAMHHLVSEVLDNAMDEAVAGYASI 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           IT+ ++ D S T+ DNGRGIP D H +    SA EVI+T LH+GGKF+   Y  +GGLHG
Sbjct: 73  ITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLHG 132

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS  L +++ ++G +Y  S+  G     L+   +     GT + F P  +IF
Sbjct: 133 VGISVVNALSKHLDVKVYKQGKLYSQSYSKGEKLTGLICEEAPKRLRGTSINFTPDPEIF 192

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLDR 238
                FN   +    R  ++L   V I    +            + +  G++ ++S    
Sbjct: 193 GEKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVSSDIPKKALINFPNGLKDYLSSKIT 252

Query: 239 HKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRSA 295
               + Q             + ++ A+ W +  +   +  + N +P   GGTH  GL+SA
Sbjct: 253 LDNLITQEIFSGNIESKPDGVILEWAICWQNNDNSAFIQSYCNTVPTPQGGTHEQGLKSA 312

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           + R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS  V   
Sbjct: 313 ILRGLKTYGEMIGNKKAA--NLTIEDILETASVVLSIFISEPSFQGQTKEKLVSQGVSKP 370

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ + D    +L  +   A  +++ V+  +  R + +  ++   RK       LPGKLA
Sbjct: 371 VENIIKDHFDHFLSSNKALATNLLEHVIAIAEFRISKKNTKN-ISRKNATQKLRLPGKLA 429

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +R +K++++Q I 
Sbjct: 430 DCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSRLEKIVNNQAIQ 489

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G LY
Sbjct: 490 DLEIALACGSLKN-YKEENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEKGHLY 548

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           + KPPLY +T+     Y  DEE  E   +   LS+  +   +        ++        
Sbjct: 549 LAKPPLYRLTQSNKTYYAADEE--EKARLTDKLSKTSKAQIEVGRFKGLGEMMPAQLKET 606

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
            +    +       + F     I      +  ++    +  +   +++ I    +
Sbjct: 607 TMHPEKRSLLKVTLEDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINDLD 661



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
           K++       + ++      V    +      F F    K +    +      +  L  +
Sbjct: 501 KNYKEENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEKGHLYLAKPPLYRLTQS 560

Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
                         L D +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V +
Sbjct: 561 NKTYYAADEEEKARLTDKLSKTSKAQIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTL 620

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            D    D +   LMG + E R +FI E +L       + LDI
Sbjct: 621 EDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINDLDI 662


>gi|51473426|ref|YP_067183.1| DNA topoisomerase IV subunit B [Rickettsia typhi str. Wilmington]
 gi|81390212|sp|Q68XE1|PARE_RICTY RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|51459738|gb|AAU03701.1| DNA topoisomerase IV subunit B [Rickettsia typhi str. Wilmington]
          Length = 663

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/656 (34%), Positives = 348/656 (53%), Gaps = 15/656 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + I  ++Y A  I++L GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE++ G+A 
Sbjct: 14  NKIIYTNYSAKDIEVLDGLEPVRKRPGMYIGGTDS-NAMHHLVSEVLDNAMDEAVAGFAS 72

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           II + ++ D S T+ DNGRGIP D H +    SA EVI+T LH+G KF+   Y  +GGLH
Sbjct: 73  IIMIKMHQDHSITIFDNGRGIPIDNHPKFPNKSALEVILTTLHSGSKFSNNVYHTAGGLH 132

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  LK+ + ++G +Y  S+  G     L+ T  +    GT + F P  +I
Sbjct: 133 GVGISVVNALSKHLKIEVYQQGKLYSQSYSKGEKLTDLISTEVSKRLRGTSINFTPDPEI 192

Query: 182 FSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLD 237
           FS    FN   +    R  ++L   V I    +            + +  G++ ++S   
Sbjct: 193 FSETLHFNPKKIYEIARSKAYLYRGVSIEWECEVEVPSDIPKKALINFPNGLKDYLSSKI 252

Query: 238 RHKKPLMQSPIR--IQGSRDNISIDLAMRWNDG-YHENVLCFTNNIPQKDGGTHLSGLRS 294
                ++       I+ + D I ++ A+ W +      +  + N +P   GGTH  GL+S
Sbjct: 253 SLDNLVIPEIFSGNIESTMDAIKLEWAICWQNNDTSAFMKSYCNTVPTPQGGTHEQGLKS 312

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ R + +Y E     K    ++  +D  E  + VLS+ + +P F  QTKEKLVS+ V  
Sbjct: 313 AILRGLKAYSEMIGNKKSA--NLTIEDIFETASVVLSVFIVEPSFQGQTKEKLVSNGVSK 370

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE+ + D    +L    + A  +++ V+  S  R   +  R+   RK       LPGKL
Sbjct: 371 LVENIIKDHFDHFLSSDKVLATHLLEHVIAISEFRRNKKNERN-ISRKNATQKLRLPGKL 429

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+    + +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 430 ADCTRTSAEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIINNQAI 489

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G L
Sbjct: 490 QDLEIALACGSLKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPQLVKEGHL 548

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ KPPLY +T+   + Y  DEE  E   +   LS+  +   +        ++       
Sbjct: 549 YLAKPPLYRLTQSNKIYYACDEE--EKIKLTYKLSKTSKAKIEVGRFKGLGEMMPAQLKE 606

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +    +       +       I      +  ++    +  +   +++ I  K +
Sbjct: 607 TTMHPEKRSLLKVTLEDVQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDQIINKLD 662



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             +KIK+T        +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V + D
Sbjct: 570 EEEKIKLTY------KLSKTSKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTLED 623

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP 798
               D +   LMG + E R +FI E +L 
Sbjct: 624 VQNVDKIVDDLMGKKPEKRFQFIYEQALV 652


>gi|226946371|ref|YP_002801444.1| DNA topoisomerase IV subunit B [Azotobacter vinelandii DJ]
 gi|226721298|gb|ACO80469.1| DNA topoisomerase IV, B subunit [Azotobacter vinelandii DJ]
          Length = 630

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/640 (34%), Positives = 338/640 (52%), Gaps = 15/640 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  + V 
Sbjct: 3   QTYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKSVQVI 58

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V D+GRG+P D+H EEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+SV
Sbjct: 59  LHEDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 118

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++R++R+GN Y M+F +G   + L + GS    +TGT V F P +  F    
Sbjct: 119 VNALSTRVEVRVRRDGNEYRMAFADGFKASELEIVGSVGKRNTGTSVHFWPDARYFDSPR 178

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H L+  + L   + +   DK S E   +   Y+ G+ ++++        L + 
Sbjct: 179 FSVARLKHVLKAKAVLCPGLSVGFEDKGSGEK--VEWHYEDGLRSYLADAVGDFPRLPEE 236

Query: 247 PIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     +    +++ A +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 237 PFTGSFAASREAVEWALLWLPEGGEFRSESYVNLIPTDQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  E    VLS+K+ +P+FS QTKE+L S E  + V   V D  S
Sbjct: 297 FRSLLPRG-VKLAPEDVWERIAFVLSMKLAEPQFSGQTKERLSSREAAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL EHP     + +  +  +       +A     RK +    +LPGKLADC+ +DP ++
Sbjct: 356 LWLNEHPELGLQLAELAISNA---GRRLKAGRKVERKKITQGPALPGKLADCAGQDPLRA 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 413 ELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGIDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G    D+++LRY KI I+ DAD DG HI TLL   F R    L+  G +++  PPLY I 
Sbjct: 473 GSA--DLSQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVHVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   +  L   +  ++      ++           + +   +D   +   
Sbjct: 531 LGKEIHYALDEAERDGILERLTAEKKRGKPQVTRFKGLGEMNPLQLRE-TTMDPNTRRLV 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
                 F     +  +   +       S      N    +
Sbjct: 590 QLTLDDFDGTREVMDMLLAKKRAGDRKSWLETKGNLAEVL 629



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     ++   L
Sbjct: 547 ILERLTAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLDDFDGTREVMDML 606

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 607 LAKKRAGD----RKSWLET 621


>gi|125525330|gb|EAY73444.1| hypothetical protein OsI_01322 [Oryza sativa Indica Group]
          Length = 647

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 250/588 (42%), Positives = 351/588 (59%), Gaps = 30/588 (5%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNM 70
           D  S  +L+ LD V+ RP MYIG T G  GLHH++YE+LDNA+DE+  GYA         
Sbjct: 27  DGGSWSVLEALDGVRTRPGMYIGST-GSRGLHHLVYEILDNAVDEAQAGYATK------- 78

Query: 71  DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVGVSVV 128
                       IPTD+H +   S  E ++T +HAGGKF      Y VSGGLHGVG+SVV
Sbjct: 79  ------------IPTDIHPQTKKSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVV 126

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTFLPSSDIFSVQ 185
           NALS  L++ + R+G  Y +++  G     L        + +  GT + F P   IF+  
Sbjct: 127 NALSEALEVTVWRDGKEYRLNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTT 186

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFVSYLDRHKKPL 243
             F+++T+  R+REL+FLN  + I+L  +    + +     Y GG+  +V +L+  KK L
Sbjct: 187 MDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQVQHNEYCYAGGLVEYVKWLNTDKKSL 246

Query: 244 MQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              PI  +   D I++D++++W  D Y + VL + N+I   DGGTH+ GL+++LTR I +
Sbjct: 247 H-DPIAFRKEMDGITVDVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINN 305

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + +KS   K    S+ G+  REG T ++++K+P+P F  QTK +L + EVR +VE  V +
Sbjct: 306 FAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQE 365

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +LE HP     I+ K L+A     AA+RAR+L R K VL  +SLPGKLADC+  DP
Sbjct: 366 NLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDP 425

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           ++SE+F+VEGDSAGGSAKQGR R+ QAILPLRGKILN+ER     +  ++EI  LI ALG
Sbjct: 426 EESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALG 485

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G+  + F+   LRYHKI+I+TDADVDGAHIRTLLLTFFFR   +L   G +Y+  PPLY
Sbjct: 486 LGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLY 545

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
            + RGK   Y  D+  L++ +     +           G +    L  
Sbjct: 546 KVERGKQAHYCYDDADLKELVNTFPTNASYHIQRFKGLGEMMPAQLWE 593



 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 11/191 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           + N E   E  +    ++ N +  +    K E     ++    I++      V    +  
Sbjct: 460 ILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVIL-TDADVDGAHIRT 518

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGIS 735
               F F  +        I      +  +                 L++T  +       
Sbjct: 519 LLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNA--SYH 576

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR+KGLGEM  +QLWETT++P+ R L ++K+ DA++A+ +FS LMG  V+ R++ IQ  
Sbjct: 577 IQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNA 636

Query: 796 SLPSA---LDI 803
           +       LDI
Sbjct: 637 ASMVNLEHLDI 647


>gi|126208721|ref|YP_001053946.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
           L20]
 gi|307250504|ref|ZP_07532449.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|126097513|gb|ABN74341.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|306857446|gb|EFM89557.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 637

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/639 (36%), Positives = 348/639 (54%), Gaps = 22/639 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+IMT+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHTDNSLEVIDNGRGMPVDIHSTEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + ++ +D  +      T +Y+ G+  ++S   +  + L
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTLNFVDHINNSS--ETWYYEDGLSDYLSEALKEFECL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + +  
Sbjct: 235 PNPPFIGDVTSETEAVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS  +++LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDSDSLDELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I  GK    Y  DE   E  L               K  + +      ++ +   +  +
Sbjct: 529 RIDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTM 581

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  +++  ++     ++ + +++ LA K A 
Sbjct: 582 DPSTRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAE 620



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 16/96 (16%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +   A
Sbjct: 540 ALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDVA 599

Query: 774 D-------DLFSRLMGDE-VEPRREFIQENSLPSAL 801
           +       ++   L+  +  E R++++Q     + L
Sbjct: 600 EENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAEL 635


>gi|304389375|ref|ZP_07371339.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327364|gb|EFL94598.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 703

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/663 (34%), Positives = 346/663 (52%), Gaps = 52/663 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M      S Y A  + +L+GL+AV+KRP+MYIG TD   GL H ++E++DN++DE+L G+
Sbjct: 1   MVTAKDVSDYSAHHLSVLEGLEAVRKRPAMYIGSTDK-RGLMHCLWEIIDNSVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V L  D S  V DNGRG+P D     G+S  EV+ T+LHAGGKF+   YKV+GGL
Sbjct: 60  CDHIEVVLYPDHSAEVRDNGRGVPIDEVPGTGLSGVEVVYTKLHAGGKFDAGLYKVAGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLV 160
           HGVG SVVNALS+ + + + R+G  + + F  G                       + L 
Sbjct: 120 HGVGASVVNALSARMDVAVDRDGYTHGLQFRRGEPGVFSDTEELNPNNAFLPFEDSSKLT 179

Query: 161 VTGSAGN-DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
             G      TGT V F     IF    DF+Y+ L +R R+ SFL   + I++ D R  E 
Sbjct: 180 KLGKVKKGTTGTRVRFWADYQIFPKEVDFSYEDLSNRARKTSFLVPGLAITITDLRGEET 239

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------RDNIS 258
              T  +KGG   FV YL   +       ++  G+                         
Sbjct: 240 LTDTFLHKGGTVDFVDYLAPDRAITDTWQLQGSGTFMEIVQVPNQQTGHLEPKEMERTCE 299

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG---SKKDKR 315
           +D+A+RW  GY      + N I    GGTHL+G  + L + + + ++ +         + 
Sbjct: 300 VDVALRWGVGYDTVEQSYVNIIETPVGGTHLAGFEAGLVKTLRAAIQANSRRLKLGAKES 359

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND----GLSAWLEEH 371
            +  +D   G T+V+++++P+P F  QTKE L S++V+ +V   V +     L++   E 
Sbjct: 360 KIEKEDILAGMTAVITVRLPEPEFEGQTKEALGSAKVKPIVTKVVTEELEAKLNSRKRED 419

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
             +   ++ K++     R +AR ++++TRRK  L+ ++LP KL DC   D +KSELF+VE
Sbjct: 420 KNQVSALLDKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSDDVEKSELFIVE 479

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSA G+AK  R+ E QA+ P+RGKILNV++    +ML++ E   +I  LG G G+  FD
Sbjct: 480 GDSALGTAKAARNSEFQALFPIRGKILNVQKTGTAQMLANAECAAIIQVLGAGSGRT-FD 538

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           I++ RY K+I+MTDADVDGAHIRTLLLT FFR M  +I  G ++   PPL+ I      +
Sbjct: 539 ISQARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPMIAAGRVFAAVPPLHRIQVNAKGK 598

Query: 552 YVKD-EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
              +   +  +  +++ L +  +     K  I +      +D     +  +   +    +
Sbjct: 599 TPGEFLYTYSEDQLHKELGKLEQTGRTYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRR 658

Query: 611 TFI 613
             +
Sbjct: 659 IRL 661



 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 5/70 (7%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEPRREFI 792
           +QRYKGLGEM+A QL ETT++P  R+L R++++D +    A+++F  LMG  V PRREFI
Sbjct: 630 IQRYKGLGEMDADQLAETTMDPQHRTLRRIRLSDEAAVNRAEEVFELLMGSAVPPRREFI 689

Query: 793 QENSLPSALD 802
            E +    LD
Sbjct: 690 IEGASK--LD 697


>gi|170723865|ref|YP_001751553.1| DNA topoisomerase IV subunit B [Pseudomonas putida W619]
 gi|169761868|gb|ACA75184.1| DNA topoisomerase IV, B subunit [Pseudomonas putida W619]
          Length = 634

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/647 (36%), Positives = 343/647 (53%), Gaps = 16/647 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   S+Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASAYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN Y+M+F +G   + L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGTVGKRNTGTSVYFSPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E   +   Y+ G+ +++      
Sbjct: 176 KYFDSPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEK--VEWHYEDGLRSYLVDSVSE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 234 FQRLPDEPFCGSLAGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLD 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  E  T VLS+KM +P+FS QTKE+L S E  + V  
Sbjct: 294 AMREFCEFRNLLPRG-VKLAPEDVWERITFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL  HP     + +  +  +       +A     RK V    +LPGKLADC+
Sbjct: 353 VVKDAFSLWLNAHPELGMQLAELAISNA---GRRLKASKKVERKRVTQGPALPGKLADCA 409

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  + 
Sbjct: 410 GQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIA 469

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  
Sbjct: 470 VAIGVDPGAA--DLSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAM 527

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  DE   +  L      ++      ++           + +   +D
Sbjct: 528 PPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMD 586

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
              +               I  +   +       +      N    +
Sbjct: 587 PNTRRLVQLTLDDLQGTTEIMDMLLAKKRAGDRKNWLETKGNLAEVL 633



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDLQGTTEIMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKNWLET 625


>gi|237798258|ref|ZP_04586719.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021110|gb|EGI01167.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 634

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/646 (36%), Positives = 335/646 (51%), Gaps = 14/646 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E  E             S  D  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYEDGLRSYLQDSVTDFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFAGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  
Sbjct: 411 QDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 470

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  P
Sbjct: 471 AIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMP 528

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK + Y  DE   +  L      ++      ++           + +   +D 
Sbjct: 529 PLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMDP 587

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             +         +   + +  +   +       S      N    +
Sbjct: 588 NTRRLVQLTLDDYAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDYAATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|154795729|gb|ABS86852.1| gyrase B [Mycobacterium avium subsp. paratuberculosis]
          Length = 541

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 237/546 (43%), Positives = 318/546 (58%), Gaps = 37/546 (6%)

Query: 22  DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81
           +AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYAD + V +  DGS  V+DNGR
Sbjct: 1   EAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYADRVDVRILDDGSVEVADNGR 59

Query: 82  GIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GIP  +H   G    +V+MT+LHAGGKF      Y VSGGLHGVGVSVVNALS+ L++ I
Sbjct: 60  GIPVAIHA-TGAPTVDVVMTQLHAGGKFGGENSGYNVSGGLHGVGVSVVNALSTRLEVNI 118

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
            R+G  +   + + +    L   G     TGT + F    DIF   +++++T+  RL+E+
Sbjct: 119 ARDGYEWSQYYDHAVP-GTLKQ-GEVTKRTGTTIRFWADPDIFETTEYDFETVARRLQEM 176

Query: 200 SFLNSSVQISLIDKR------------------------------SPEPREITMFYKGGI 229
           +FLN  + I+L D+R                                + +  T  Y GG+
Sbjct: 177 AFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKSAQEKAAESAAPHKVKHRTFHYPGGL 236

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +++R K P+ QS I   G      +++AM+WN GY E+V  F N I   +GGTH 
Sbjct: 237 VDFVKHINRTKNPIHQSIIDFGGKGPGHEVEIAMQWNGGYSESVHTFANTINTHEGGTHE 296

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
                                                          P+F  QTK KL +
Sbjct: 297 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFEGQTKTKLGN 356

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +EV+S V+   N+ L+ W E +P +AK+IV K + ++  R AAR+AR+L RRK   D+  
Sbjct: 357 TEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAVSSAQARIAARKARELVRRKSATDLGG 416

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L
Sbjct: 417 LPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVL 476

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            + E+  +ITALGTGI  D FDI KLRYHKI++M DADVDG HI TLLLT  FR M  LI
Sbjct: 477 KNTEVQAIITALGTGI-HDEFDITKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLI 535

Query: 530 HNGFLY 535
            +G ++
Sbjct: 536 EHGHVF 541


>gi|53728805|ref|ZP_00135065.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
          Length = 637

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/639 (36%), Positives = 348/639 (54%), Gaps = 22/639 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+IMT+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHTDNSLEVIDNGRGMPVDIHSTEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKFFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + ++ +D  +      T +Y+ G+  ++S   +  + L
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTLNFVDHINNSS--ETWYYEDGLSDYLSEALKEFECL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + +  
Sbjct: 235 PNPPFIGDVTSETEAVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS  +++LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDSDSLDELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I  GK    Y  DE   E  L               K  + +      ++ +   +  +
Sbjct: 529 RIDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTM 581

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  +++  ++     ++ + +++ LA K A 
Sbjct: 582 DPSTRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAE 620



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 16/96 (16%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +   A
Sbjct: 540 ALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDVA 599

Query: 774 D-------DLFSRLMGDE-VEPRREFIQENSLPSAL 801
           +       ++   L+  +  E R++++Q     + L
Sbjct: 600 EENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAEL 635


>gi|28493461|ref|NP_787622.1| DNA topoisomerase IV subunit B [Tropheryma whipplei str. Twist]
 gi|28476502|gb|AAO44591.1| DNA gyrase subunit B-like protein [Tropheryma whipplei str. Twist]
          Length = 662

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/644 (34%), Positives = 342/644 (53%), Gaps = 32/644 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS N     Y+AD I +L+GL AV+KRP MYIG TD   GL H ++E++DN++DE L G+
Sbjct: 1   MSSNT---DYNADDIALLEGLAAVRKRPGMYIGSTDNH-GLAHCLWEIIDNSVDEVLAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            +++ +TL+ D S +V D GRGIP D+  + G++  E++ T+LHAGGKF   +Y  SGGL
Sbjct: 57  GNVVNITLHGDNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLHAGGKFGTGAYFTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALS  L + + R+G  + M F N +          A N TGT V F P   
Sbjct: 117 HGVGASVVNALSEKLSVEVDRDGMTWVMEFRNQVTSGLRSKCKIASNVTGTRVRFWPDPL 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +   ++L  R  + +FL   +++++ D+   +        +GG + FV +L   +
Sbjct: 177 IFGSAEICIESLHQRAMQTAFLVPGLRVNIEDRVLGKSSSYLF--EGGCKQFVEHLSAGE 234

Query: 241 ----------KPLMQSPIRIQGS---------RDNISIDLAMRWNDGYHENVLCFTNNIP 281
                     K      + +                 +D+A+ W + +  ++  F N I 
Sbjct: 235 LITDVLCIRGKGSFSEAVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNVIE 294

Query: 282 QKDGGTHLSGLRSALTRQI-TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              GGTH SG   AL + I  +   +S   K        +D   G T+V+S+K+P+P+F 
Sbjct: 295 TPKGGTHYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQFE 354

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLE--EHPLEAKIIVKKVLDASMVRDAARRARDL 398
            QTKE L +  V+ +V + V D L    E  ++  + + +++KV+     R AAR +R+ 
Sbjct: 355 GQTKEVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASRET 414

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            RRK  L+ +SLP KL DC   D  +SELF+VEGDSA G+A++ R+ E QA+LP+RGKIL
Sbjct: 415 QRRKNALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGKIL 474

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV++A     L++ E  ++I  +G G G + FDI + RY K+IIM+DADVDGAHIR LLL
Sbjct: 475 NVQKASVADALANAECASIIQVIGAGSGSN-FDIAQARYGKVIIMSDADVDGAHIRILLL 533

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T FFR M  +I +G ++   PPL+ +    S + +      E   +   LS   +   + 
Sbjct: 534 TLFFRYMQPMISSGRVFSALPPLHQVVVKNSNEKIYTRSDRE---LEMVLSRLKQEGLEH 590

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           +  I +      +D     +  +        +  +  A  +   
Sbjct: 591 REPIQRYKGLGEMDADQLAETTMDRSKRTLLRIRMSDAQQASDI 634



 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 6/178 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +     +    ++ A+ +  I   S  ++  +      ++      V    +    
Sbjct: 473 ILNVQKASVADALANAECASIIQVIGAGSGSNFDIAQARYGKVIIMSDADVDGAHIRILL 532

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-LLDTIFSIGRK-GIS--- 735
               F      I S R+      +  ++      KI       L+ + S  ++ G+    
Sbjct: 533 LTLFFRYMQPMISSGRVFSALPPLHQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHRE 592

Query: 736 -MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
            +QRYKGLGEM+A QL ETT++   R+LLR++++DA QA D+F+ LMG++V PRREFI
Sbjct: 593 PIQRYKGLGEMDADQLAETTMDRSKRTLLRIRMSDAQQASDIFALLMGNDVAPRREFI 650


>gi|19909541|dbj|BAB86966.1| DNA gyrase subunit B [Chlorobium limicola]
          Length = 457

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 220/460 (47%), Positives = 315/460 (68%), Gaps = 5/460 (1%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAE 97
             GLHH++YE++DN+IDE+L G+ D I V +N DGS TV+D GRGIP D+H  +  SA E
Sbjct: 2   SRGLHHLVYEIVDNSIDETLAGFNDYIHVAMNPDGSVTVTDRGRGIPVDIHPVKKKSALE 61

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           ++MT + AGGKF++ +YKVSGGLHGVG SVVNALS W +  + R+G I+  ++  G+   
Sbjct: 62  LVMTVIGAGGKFDKGAYKVSGGLHGVGASVVNALSEWCEAEVYRDGKIFRQTYKRGVPQG 121

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
            +   G   +  GT+VTF P  DIF + +F  D +  R+REL+FLNS+++I +   +  E
Sbjct: 122 GVEEVG-TTDQKGTKVTFKPDPDIFKITEFRKDIIIDRMRELAFLNSNLRIIV---QDAE 177

Query: 218 PREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             E T  ++GG++               +S     G R++  +++A+++ND Y ENV  +
Sbjct: 178 GFEETFHFEGGLQGVSCALPTPTASACSRSRSSFSGERESTMVEIALQYNDSYQENVFSY 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI   +GGTH++G R ALTR + +Y +K+   K  K ++ GDD +EG T+V+S+K+P+
Sbjct: 238 VNNINTHEGGTHVTGFRKALTRTLNAYAQKNDLLKNVKITLTGDDFKEGLTAVISVKVPE 297

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SE +S+VE+ VN+ L+ + E +P   K+I++KV  A++ R+AAR+A+
Sbjct: 298 PQFEGQTKTKLGNSETQSIVETIVNEQLAEFAESNPGTLKLIIEKVKGAAISREAARKAK 357

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRK VL+ + LPGKLADCS  DP   EL++VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 358 ELTRRKSVLESSGLPGKLADCSINDPDHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGK 417

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           ILNVE+AR  KML ++EI T+I ALGT IG++ F   KLR
Sbjct: 418 ILNVEKARLHKMLENEEIKTIILALGTSIGEEEFSPEKLR 457


>gi|307261731|ref|ZP_07543397.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868549|gb|EFN00360.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 637

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/639 (36%), Positives = 348/639 (54%), Gaps = 22/639 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+IMT+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHTDNSLEVIDNGRGMPVDIHSTEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + ++ +D  +      T +Y+ G+  ++S   +  + L
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTLNFVDHINNSS--ETWYYEDGLSDYLSEALKEFECL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + +  
Sbjct: 235 PNPPFIGDVTSETEAVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS  +++LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDSDSLDELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I  GK    Y  DE   E  L               K  + +      ++ +   +  +
Sbjct: 529 RIDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTM 581

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  +++  ++     ++ + +++ LA K A 
Sbjct: 582 DPSTRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAE 620



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 16/96 (16%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +   A
Sbjct: 540 ALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDVA 599

Query: 774 D-------DLFSRLMGDE-VEPRREFIQENSLPSAL 801
           +       ++   L+  +  E R++++Q     + L
Sbjct: 600 EENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAEL 635


>gi|298346918|ref|YP_003719605.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|315656629|ref|ZP_07909516.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|298236979|gb|ADI68111.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|315492584|gb|EFU82188.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 703

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/663 (34%), Positives = 346/663 (52%), Gaps = 52/663 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M      S Y A  + +L+GL+AV+KRP+MYIG TD   GL H ++E++DN++DE+L G+
Sbjct: 1   MVTAKDVSDYSAHHLSVLEGLEAVRKRPAMYIGSTDK-RGLMHCLWEIIDNSVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V L  D S  V DNGRG+P D     G+S  EV+ T+LHAGGKF+   YKV+GGL
Sbjct: 60  CDHIEVVLYPDHSAEVRDNGRGVPIDEVPGTGLSGVEVVYTKLHAGGKFDAGLYKVAGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLV 160
           HGVG SVVNALS+ + + + R+G  + + F  G                       + L 
Sbjct: 120 HGVGASVVNALSARMDVAVDRDGYTHGLQFRRGEPGVFSDTEELNPNNAFLPFEDSSKLT 179

Query: 161 VTGSAGN-DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
             G      TGT V F     IF    DF+Y+ L +R R+ SFL   + I++ D R  E 
Sbjct: 180 KLGKVKKGTTGTRVRFWADYQIFPKEVDFSYEDLSNRARKTSFLVPGLAITITDLRGEET 239

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------RDNIS 258
              T  +KGG   FV YL   +       ++  G+                         
Sbjct: 240 LTDTFLHKGGTVDFVDYLAPDRAITDTWQLQGSGTFMEIVQVPNQQTGHLEPKEMERTCE 299

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG---SKKDKR 315
           +D+A+RW  GY      + N I    GGTHL+G  + L + + + ++ +         + 
Sbjct: 300 VDVALRWGVGYDTVEQSYVNIIETPVGGTHLAGFEAGLVKTLRAAIQANSRRLKLGAKES 359

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND----GLSAWLEEH 371
            +  +D   G T+V+++++P+P F  QTKE L S++V+ +V   V +     L++   E 
Sbjct: 360 KIEKEDILTGMTAVITVRLPEPEFEGQTKEALGSAKVKPIVTKVVTEELEAKLNSRKRED 419

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
             +   ++ K++     R +AR ++++TRRK  L+ ++LP KL DC   D +KSELF+VE
Sbjct: 420 KNQVSALLDKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSDDVEKSELFIVE 479

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSA G+AK  R+ E QA+ P+RGKILNV++    +ML++ E   +I  LG G G+  FD
Sbjct: 480 GDSALGTAKAARNSEFQALFPIRGKILNVQKTGTAQMLANAECAAIIQVLGAGSGRT-FD 538

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           I++ RY K+I+MTDADVDGAHIRTLLLT FFR M  +I  G ++   PPL+ I      +
Sbjct: 539 ISQARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPMIAAGRVFAAVPPLHRIQVNAKGK 598

Query: 552 YVKD-EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
              +   +  +  +++ L +  +     K  I +      +D     +  +   +    +
Sbjct: 599 TPGEFLYTYSEDQLHKELGKLEQTGRTYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRR 658

Query: 611 TFI 613
             +
Sbjct: 659 IRL 661



 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 5/70 (7%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEPRREFI 792
           +QRYKGLGEM+A QL ETT++P  R+L R++++D +    A+++F  LMG  V PRREFI
Sbjct: 630 IQRYKGLGEMDADQLAETTMDPQHRTLRRIRLSDEAAVNRAEEVFELLMGSAVPPRREFI 689

Query: 793 QENSLPSALD 802
            E +    LD
Sbjct: 690 IEGASK--LD 697


>gi|47779376|gb|AAT38605.1| predicted topoisomerase IV subunit B [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 630

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 216/636 (33%), Positives = 323/636 (50%), Gaps = 16/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++YD+ +I++L GLD VKKRP MY  DT   +   H+I EVLDN++DE++ G+   I
Sbjct: 1   MAKNTYDSKAIEVLSGLDPVKKRPGMYT-DTSCPN---HLIQEVLDNSVDEAISGHCTNI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +  DG   VSD+GRG+P D+H E  +S  E+I+ +LHAG KF+   Y  SGGLHGVG
Sbjct: 57  KIKIQKDGFINVSDDGRGMPVDIHPEHKLSGVELILCKLHAGAKFSGDEYNFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           VSVVNALS  L++ IKR+   +EM F NG   N L V G  G  +TGT + F P+ D F 
Sbjct: 117 VSVVNALSESLQVNIKRDSKEHEMRFSNGDKKNELKVVGDVGLRNTGTSIKFKPNPDYFE 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
                 + L+H L+  + L   + I   D+   E  +     + G+++++         +
Sbjct: 177 SDKIKTNELKHLLKAKAVLCPGLTIDFHDESKKEKIKWFY--EDGLKSYLEDQSDGIDLI 234

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVL--CFTNNIPQKDGGTHLSGLRSALTRQIT 301
           +   I    S  +  ++  + W    ++N L   + N IP   GG+HL+G +S L   + 
Sbjct: 235 LSESIVSSNSSKDQEVEFVINWTSKPYKNKLDETYVNLIPTAQGGSHLNGFKSGLLDALK 294

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + E           +  DD       V+S KM +P+F+ QTKE+L S +  + V     
Sbjct: 295 EFCE-YRSLLPKGLKINADDVINNAIFVVSSKMQNPQFAGQTKERLDSKDHMTFVSGSTK 353

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D LS W  +H  E + I +  + ++  R    +A     RK      +LPGKL+DC+  D
Sbjct: 354 DILSIWFNKHTEEGEKIAELAIISAQAR---VKASSTVERKKTFKGPALPGKLSDCNSED 410

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
             K+ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN       +++ SQEI  L TA+
Sbjct: 411 LNKTELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESSEIIKSQEIKNLSTAI 470

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G   G    D++ LRY KI I+ DAD DG HI TLL   F R    L+++G ++I  PPL
Sbjct: 471 GVLPGNA--DVSSLRYGKICILADADSDGLHIATLLCALFLRHFKPLVNDGRIFIAMPPL 528

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y +  GK + Y  DE   +  + +    +        +         + + + + +D   
Sbjct: 529 YRVDCGKEVLYALDELQKDKIVKDFKNKKGKPKINIQRFKGLGEMNPSQLRETV-MDPES 587

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +               +  +   + +         K
Sbjct: 588 RQLVRLSISATDNANAMMDLLLSKKNAPARKEWLEK 623



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 731 RKG---ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           +KG   I++QR+KGLGEMN SQL ET ++P++R L+R+ I+    A+ +   L+  +  P
Sbjct: 556 KKGKPKINIQRFKGLGEMNPSQLRETVMDPESRQLVRLSISATDNANAMMDLLLSKKNAP 615

Query: 788 -RREFIQE 794
            R+E++++
Sbjct: 616 ARKEWLEK 623


>gi|254362507|ref|ZP_04978612.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Mannheimia haemolytica
           PHL213]
 gi|153094104|gb|EDN75008.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Mannheimia haemolytica
           PHL213]
          Length = 635

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/645 (36%), Positives = 347/645 (53%), Gaps = 20/645 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+AD I
Sbjct: 1   MSEKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGFADKI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+I+T+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G +Y ++F NG+    L V G+     TGT V F P+   F 
Sbjct: 117 ISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+ IDK +      + +Y+ G+  ++S      + +
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTE--ESWYYEDGLSDYLSEALNGYETV 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + +  
Sbjct: 235 PNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTLKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQTGKLIAEMAISSAQSR---MRAAKKVVRKKLVSGPALPGKLADCTAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS ++ +LRY K+ I+ DAD DG HI TLL   F R  P L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I  GK    Y  DE   E  L   +  +        KG+       + + +   ++   
Sbjct: 529 RIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFKGL--GEMNPSQLRE-TTMEPST 585

Query: 602 KDFYPNHDKTFIEQAVISG--VFNCESDQEINVSLASKLANRLNF 644
           +          +E+  ++   + +    ++        L NR + 
Sbjct: 586 RRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDE 630



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 101/294 (34%), Gaps = 50/294 (17%)

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +     ++         +   ++S        +K V+ K  +          D   +D  
Sbjct: 352 KDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKLVSGPALPGKLADCTAQDLS 411

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
               + F+ +   +G    ++  +   ++       LN             +++  +L  
Sbjct: 412 R--TELFLVEGDSAGGSAKQARDKEYQAILPLRGKILN----------TWEVSSDQVLAS 459

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKR--IFSNRIEENYL-----------TILSLICNGD 712
           +    +     ++  S      +Y +  I ++   +                  L+ NG 
Sbjct: 460 QEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGH 519

Query: 713 ---------KIKI--TGPCSLLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWET 753
                    +I I        LD             +KG  ++QR+KGLGEMN SQL ET
Sbjct: 520 VYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRET 579

Query: 754 TLNPDTRSLLRVKITDASQ-----ADDLFSRLMGDE-VEPRREFIQENSLPSAL 801
           T+ P TR L+++   D  +       ++   L+G +  E R++++Q     + L
Sbjct: 580 TMEPSTRRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEADL 633


>gi|91205045|ref|YP_537400.1| DNA topoisomerase IV subunit B [Rickettsia bellii RML369-C]
 gi|122990939|sp|Q1RK03|PARE_RICBR RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|91068589|gb|ABE04311.1| DNA topoisomerase IV, B subunit [Rickettsia bellii RML369-C]
          Length = 662

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/656 (34%), Positives = 352/656 (53%), Gaps = 15/656 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
             I N++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDN++DE++ G+A 
Sbjct: 13  TKIINNTYSAKDIEVLEGLEPVRKRPGMYIGGTD-LNAMHHLVSEVLDNSMDEAVAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           IIT+ ++ D S T+SDNGRGIP D H +    SA EVI+T LH+GGKF+   Y+ +GGLH
Sbjct: 72  IITIKMHQDHSITISDNGRGIPIDNHPKFPNKSALEVILTTLHSGGKFSSNVYQTAGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNAL+  L++++ ++G +Y+ S+  G     L+   +     GT + F+P  +I
Sbjct: 132 GVGVSVVNALAEHLEIKVYKQGKLYKQSYAKGEKLTELICEEAPKRLKGTSINFIPDPEI 191

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---PREITMFYKGGIEAFVSYLD 237
           F     FN   +    R  ++L   V I    +       P++  + +  G++ ++S   
Sbjct: 192 FGDKIHFNPKKVYELARSKAYLYRGVTIEWECEIEASSDVPKKALINFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPIR--IQGSRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRS 294
                +        ++  +D I ++ A+ W +      +  + N +P   GGTH  GL+S
Sbjct: 252 TPDDLITTEIFSGNVESEQDGIKLEWAICWQNNDSSAFIQSYCNTVPTPLGGTHEQGLKS 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           AL R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS  V  
Sbjct: 312 ALLRGLKAYGEMVGNKKTANLAI--EDILETASVVLSIFIAEPTFQGQTKEKLVSQGVSK 369

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
             E+ + D    +L  +   A  +++  +  +  R   +  +    RK       LPGKL
Sbjct: 370 PAENIIKDHFDHFLSSNKTIANNLLEHFIAIAEFRLNKKNEKT-ISRKNATQKLRLPGKL 428

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 429 ADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAI 488

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+ +G L
Sbjct: 489 QDLEIALACGSMKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEDGHL 547

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ KPPLY +T+     Y  DEE      +   LS+  +   +        ++       
Sbjct: 548 YLAKPPLYRLTQSNKTYYANDEEEKAK--LTDKLSKSSKAKIEVGRFKGLGEMMPMQLKE 605

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +    +       + F     I      +  ++    +  +   +++ I  + +
Sbjct: 606 TTMHPEKRSLLKVTLEDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 9/164 (5%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
           S K++       + ++      V    +      F F    K +    +      +  L 
Sbjct: 499 SMKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEDGHLYLAKPPLYRLT 558

Query: 709 CNGDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
            +              L D +    +  I + R+KGLGEM   QL ETT++P+ RSLL+V
Sbjct: 559 QSNKTYYANDEEEKAKLTDKLSKSSKAKIEVGRFKGLGEMMPMQLKETTMHPEKRSLLKV 618

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            + D    D +   LMG + E R +FI E +L       + LDI
Sbjct: 619 TLEDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELDI 662


>gi|312958632|ref|ZP_07773152.1| DNA topoisomerase IV, B subunit [Pseudomonas fluorescens WH6]
 gi|311287175|gb|EFQ65736.1| DNA topoisomerase IV, B subunit [Pseudomonas fluorescens WH6]
          Length = 634

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 231/647 (35%), Positives = 344/647 (53%), Gaps = 16/647 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    + SY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MATPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  AKSVHVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++++KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTLVRVKVKRDGNEYEMTFADGYKATDLQVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + ++  DK + E   +   Y+ G+ +++      
Sbjct: 176 KYFDSPKFSISRLKHVLKAKAVLCPGLLVTFEDKGTGEK--VEWHYEDGLRSYLEDSVSD 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 234 FERLPNEPFCGSLAGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLD 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V  
Sbjct: 294 AMREFCEYRSLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL EHP     + +  ++ +       +A     RK +    +LPGKLADC+
Sbjct: 353 VVKDAFSLWLNEHPELGLALAELAINNA---GRRLKASKKVERKRITQGPALPGKLADCA 409

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  + 
Sbjct: 410 GQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIA 469

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+ +LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  
Sbjct: 470 VAIGVDPGAA--DMTQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAM 527

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  DE   +  L      ++      ++           + +   +D
Sbjct: 528 PPLYRIDLGKEIFYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMD 586

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
              +       + F   + +  +   +       S      N    +
Sbjct: 587 PNTRRLVQLTLEDFAATSEMMDMLLAKKRAPDRKSWLESKGNLAEVL 633



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLEDFAATSEMMDML 610

Query: 781 MGDEVEP-RREFIQE 794
           +  +  P R+ +++ 
Sbjct: 611 LAKKRAPDRKSWLES 625


>gi|325924529|ref|ZP_08186048.1| DNA topoisomerase IV subunit B [Xanthomonas gardneri ATCC 19865]
 gi|325545024|gb|EGD16359.1| DNA topoisomerase IV subunit B [Xanthomonas gardneri ATCC 19865]
          Length = 629

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/588 (38%), Positives = 320/588 (54%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   NTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQVEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKFN ++Y  SGGLHGVGVS
Sbjct: 58  TLFKDGSCEVSDDGRGMPVDMHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ ++L IKREG+ + M F +GI  + L V G+    +TGT + F      F   
Sbjct: 118 VVNALSTKVELFIKREGSEHRMEFRDGIAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L D  + E        + G+  ++       + L  
Sbjct: 178 KFNVRALRHLLRAKAVLCPGLTVKLHDGATGEQDSWHF--ENGLRDYLKGEMAEHEMLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 DLFAGSLKKDTEIVDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVLDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LYLNQNVEIGEKIAQIAIDRASARLKTE---KQIVRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  DI+ LRY K+ I+ DAD DG HI TLL   F R  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--DISGLRYGKVTILADADSDGLHIATLLTALFLRHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      +     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDEEEKTTLLDKIAREKIKGQVSVTRFKGLGEMNPQQLRE 577



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LLD I     KG +S+ R+KGLGEMN  QL E+T++PDTR L+++ I D  Q   L   L
Sbjct: 546 LLDKIAREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+++++ 
Sbjct: 606 LAKKRAGD----RKQWLES 620


>gi|157827616|ref|YP_001496680.1| DNA topoisomerase IV subunit B [Rickettsia bellii OSU 85-389]
 gi|157802920|gb|ABV79643.1| DNA topoisomerase IV subunit B [Rickettsia bellii OSU 85-389]
          Length = 662

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/655 (34%), Positives = 353/655 (53%), Gaps = 15/655 (2%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            I N++Y A  I++L+GL+ V+KRP MYIG TD  + +HH++ EVLDN++DE++ G+A I
Sbjct: 14  KIINNTYSAKDIEVLEGLEPVRKRPGMYIGGTD-LNAMHHLVSEVLDNSMDEAVAGFASI 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           IT+ ++ D S T+SDNGRGIP D H +    SA EVI+T LH+GGKF+   Y+ +GGLHG
Sbjct: 73  ITIKMHQDHSITISDNGRGIPIDNHPKFPNKSALEVILTTLHSGGKFSSNVYQTAGGLHG 132

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNAL+  L++++ ++G +Y+ S+  G     L+   +     GT + F+P  +IF
Sbjct: 133 VGVSVVNALAEHLEIKVYKQGKLYKQSYAKGEKLTELICEEAPKRLKGTSINFIPDPEIF 192

Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---PREITMFYKGGIEAFVSYLDR 238
                FN   +    R  ++L   V I    +       P++  + +  G++ ++S    
Sbjct: 193 GDKIHFNPKKVYELARSKAYLYRGVTIEWECEIEASSDVPKKALINFPNGLKDYLSSKIT 252

Query: 239 HKKPLMQSPIR--IQGSRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTHLSGLRSA 295
               +        ++  +D I ++ A+ W +      +  + N +P   GGTH  GL+SA
Sbjct: 253 PDDLITTEIFSGNVESEQDGIKLEWAICWQNNDSSAFIQSYCNTVPTPLGGTHEQGLKSA 312

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L R++ +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS  V   
Sbjct: 313 LLRRLKAYGEMVGNKKTANLAI--EDILETASVVLSIFIAEPTFQGQTKEKLVSQGVSKP 370

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
            E+ + D    +L  +   A  +++  +  +  R   +  +    RK       LPGKLA
Sbjct: 371 AENIIKDHFDHFLSSNKTIANNLLEHFIAIAEFRLNKKNEKT-ISRKNATQKLRLPGKLA 429

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+   P+ +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I 
Sbjct: 430 DCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAIQ 489

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+ +G LY
Sbjct: 490 DLEIALACGSMKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEDGHLY 548

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           + KPPLY +T+     Y  DEE      +   LS+  +   +        ++        
Sbjct: 549 LAKPPLYRLTQSNKTYYANDEEEKAK--LTDKLSKSSKAKIEVGRFKGLGEMMPMQLKET 606

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
            +    +       + F     I      +  ++    +  +   +++ I  + +
Sbjct: 607 TMHPEKRSLLKVTLEDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 9/164 (5%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
           S K++       + ++      V    +      F F    K +    +      +  L 
Sbjct: 499 SMKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEDGHLYLAKPPLYRLT 558

Query: 709 CNGDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
            +              L D +    +  I + R+KGLGEM   QL ETT++P+ RSLL+V
Sbjct: 559 QSNKTYYANDEEEKAKLTDKLSKSSKAKIEVGRFKGLGEMMPMQLKETTMHPEKRSLLKV 618

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLP------SALDI 803
            + D    D +   LMG + E R +FI E +L       + LDI
Sbjct: 619 TLEDFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELDI 662


>gi|59712835|ref|YP_205611.1| DNA topoisomerase IV subunit B [Vibrio fischeri ES114]
 gi|59480936|gb|AAW86723.1| DNA topoisomerase IV, subunit B [Vibrio fischeri ES114]
          Length = 626

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 217/591 (36%), Positives = 319/591 (53%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTVRP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H  E +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  AKKVEVILHADQSLEVIDDGRGMPVDIHPVEKVSGVELILCKLHAGGKFSGKNYEFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F NG   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFENGDKVSDLTVTGTCGRRNRGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F    F+   L + L+  + L   ++I   DK + +          K  +   V+   
Sbjct: 172 SYFDSAKFSVTRLINNLKAKAVLCPGLEIVFKDKVNDKEHNWCYEDGLKDYLLEGVTGFT 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +          G   + ++       +G       + N IP   GGTH++G+R  L 
Sbjct: 232 LLPEIPFTGAFSGTGEAADWAVTWL---PEGGELVAESYVNLIPTAQGGTHVNGMRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E           +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRN-LVPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK +    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQIAEQLAEACIANAH---RRMRAAKKVVRKKIASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS D++ LRY K+ I+ DAD DG HI TLL   + +   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDDLSGLRYGKVCILADADSDGLHIATLLCALYLKHFKALVQAGHVYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  DEE  E  L   S           KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDEEEKEGVLDRLSNKRAKINVQRFKGLGEMNPLQ 573



 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 106/284 (37%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  + + L    ++        +K V+ K             D  ++D
Sbjct: 349 VVKDAFSLWLNEKPQIAEQLAEACIANAHRRMRAAKKVVRKKIASGPALPGKLTDCSVQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LAR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S    G +Y ++             +  +   YL    +L+  
Sbjct: 457 ASQEVHDISVALGIDPDSDDLSGLRYGKVCILADADSDGLHIATLLCALYLKHFKALVQA 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKG-----------ISMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G           I++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDCGKEVFYALDEEEKEGVLDRLSNKRAKINVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I D  Q D++   L+G +  + RR ++Q N
Sbjct: 577 TTMDPNTRRLVQLTIDDDEQTDEMMDMLLGKKRADDRRSWLQSN 620


>gi|294651940|ref|ZP_06729229.1| DNA topoisomerase IV subunit B [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822172|gb|EFF81086.1| DNA topoisomerase IV subunit B [Acinetobacter haemolyticus ATCC
           19194]
          Length = 627

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/641 (35%), Positives = 346/641 (53%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+A+ +TVT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHANQVTVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  IYEDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R GN+Y+M+F  G    PL V     A   TGT V F P +  F   
Sbjct: 118 VNALSTRVEVAVQRHGNLYQMAFEQGEPVAPLSVLEGKVAKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I   DK + E  E     + G+  ++      ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYDDKINNEKIEWQF--ENGLVDYLMDELEDREILPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  +  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQAERAACEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-MKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASNIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     +      + A+    RK ++   +LPGKLADC     + 
Sbjct: 355 ALWLNQHAEIATQLAEMA--IAKAGRRLKAAKK-VERKKIVAGPALPGKLADCVGLTRED 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPLY I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPTLVEEGHLYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D++ LE  L N           +    I++      ++ +   +  +   
Sbjct: 530 DIGKDVHYALDDDELEAILKNIK--------GNKNPQITRFKGLGEMNASQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++        L  + N 
Sbjct: 582 TRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKHWLEQKGNL 622



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           L+ I     G K   + R+KGLGEMNASQL ETT++P+TR L+++ + DA
Sbjct: 544 LEAILKNIKGNKNPQITRFKGLGEMNASQLRETTMDPNTRRLVQLDLDDA 593


>gi|319786497|ref|YP_004145972.1| DNA topoisomerase IV subunit beta [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465009|gb|ADV26741.1| DNA topoisomerase IV, B subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 629

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/588 (38%), Positives = 324/588 (55%), Gaps = 17/588 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DNA+DE+L G+A  + V
Sbjct: 2   SSRYNAADIEVLSGLDPVKRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHARTVEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKF+ K+Y  SGGLHGVGVS
Sbjct: 58  TLYRDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNKNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +++ IKR+G  + ++F +G    PL V G+    +TGT V F P    F   
Sbjct: 118 VVNALSTLVEVHIKRDGAEHRIAFRDGNRATPLEVVGTVGKKNTGTRVRFWPDPKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
             N   L+H LR  + L   + ++L D+ S E    +  Y+ G+  ++      ++ L  
Sbjct: 178 KINVRALRHLLRAKAVLCPGLTVNLFDEASGER--DSWHYEDGLRDYLRNELAGRELLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   ++   +D A+ W          + N IP    GTH++GLR+ LT  +  + +
Sbjct: 236 DLFSGALKKETEVVDWAVAWIPEGELVQESYVNLIPTAQHGTHVNGLRTGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVAFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++    + I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LWLNQNVEMGEKIAQIAIDRASARLKTE---KQVTRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN        +L+SQE+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASQEVHDLAVAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D  D+  LRY K++I+ DAD DG HI TLL   F R  P+L+  G +++  PPL+ + 
Sbjct: 472 GKD--DLTGLRYGKVVILADADSDGLHIATLLSALFLRHFPALVAAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            GK + Y  DEE      E     +   +         G ++   LR 
Sbjct: 530 VGKQVFYALDEEEKRLLLEKIAREKIKGQVSVTRFKGLGEMNPQQLRE 577



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LL+ I     KG +S+ R+KGLGEMN  QL E+T++PDTR L+++ + D  Q   L   L
Sbjct: 546 LLEKIAREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTVDDGDQTHSLMDML 605


>gi|229588054|ref|YP_002870173.1| DNA topoisomerase IV subunit B [Pseudomonas fluorescens SBW25]
 gi|229359920|emb|CAY46774.1| topoisomerase IV subunit B [Pseudomonas fluorescens SBW25]
          Length = 634

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/647 (35%), Positives = 345/647 (53%), Gaps = 16/647 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    + SY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MATPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  AKSVHVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++++KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSNHVRVKVKRDGNEYEMTFADGYKATDLQVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + ++  DK + E   +   Y+ G+ +++    R 
Sbjct: 176 KYFDSPKFSISRLKHVLKAKAVLCPGLLVTFEDKGTNEK--VEWHYEDGLRSYLEDSVRD 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 234 FERLPNEPFCGSLAGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLD 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V  
Sbjct: 294 AMREFCEYRSLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL EHP     + +  ++ +       +A     RK +    +LPGKLADC+
Sbjct: 353 VVKDAFSLWLNEHPELGLALAELAINNA---GRRLKASKKVERKRITQGPALPGKLADCA 409

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  + 
Sbjct: 410 GQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIA 469

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  
Sbjct: 470 VAIGVDPGAA--DMSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAM 527

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  DE   +  L      ++      ++           + +   +D
Sbjct: 528 PPLYRIDLGKEIFYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMD 586

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
              +         F   + +  +   +       S      N    +
Sbjct: 587 PNTRRLVQLTLDDFAATSEMMDMLLAKKRAPDRKSWLESKGNLAEVL 633



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 610

Query: 781 MGDEVEP-RREFIQE 794
           +  +  P R+ +++ 
Sbjct: 611 LAKKRAPDRKSWLES 625


>gi|285017938|ref|YP_003375649.1| DNA topoisomerase iv subunit b protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473156|emb|CBA15662.1| probable dna topoisomerase iv subunit b protein [Xanthomonas
           albilineans]
          Length = 629

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/631 (35%), Positives = 328/631 (51%), Gaps = 14/631 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DNA+DE+L G+A  I V
Sbjct: 2   NTRYNAADIEVLSGLDPVKRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHARHIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC VSD+GRG+P D+H EE IS  E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVSDDGRGMPVDIHPEEKISGVELILTRLHAGGKFSDRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  ++L I+REGN Y M+F +G   + L + GS    +TGT + FLP  + F   
Sbjct: 118 VVNALSKQVQLFIRREGNEYRMAFADGHAASKLEIVGSVGKKNTGTRLRFLPDPNYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H LR  + L   + + L D+ + E        + G+  ++      ++ L  
Sbjct: 178 KFAVRALRHLLRAKAVLCPGLTVKLHDEATDEHDTWHF--EDGLRDYLRGELAERELLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A  W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 DLFVGSLKKDREIVDWAAAWVVDGDLVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+FS QTKE+L S +    +E   +D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWDRVAFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++      I +  +D +  R           RK V    +LPGKLADC  +D  ++
Sbjct: 355 LWLNQNVETGTRIAQIAIDRASARLKTE---KQITRKKVTQGPALPGKLADCISQDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSA+Q R ++ QAILPLRGKILN        +L+S+E+  L  A+G   
Sbjct: 412 ELFLVEGDSAGGSARQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G++  +I+ LRY K++I+ DAD DG HI TLL   F R  PSL+  G +++  PPL+ + 
Sbjct: 472 GKE--EIDGLRYGKVVILADADSDGLHIATLLTALFLRHFPSLVKAGHVFVAMPPLFRVD 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DEE     L   +  +       ++           + +   I    +   
Sbjct: 530 VGKQVFYALDEEEKRSLLEKIAREKIKGQVSVTRFKGLGEMNPQQLRE-STIHPDTRRLV 588

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                   +   +  +   +           
Sbjct: 589 QLTVDEGDDTPALMDMLLAKKRASDRKQWLE 619



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            SLL+ I     KG +S+ R+KGLGEMN  QL E+T++PDTR L+++ + +      L  
Sbjct: 544 RSLLEKIAREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTVDEGDDTPALMD 603

Query: 779 RLMGDE-VEPRREFIQENSLPSALDI 803
            L+  +    R+++++     ++LD+
Sbjct: 604 MLLAKKRASDRKQWLETKGDLASLDV 629


>gi|262280518|ref|ZP_06058302.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus RUH2202]
 gi|262258296|gb|EEY77030.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus RUH2202]
          Length = 627

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/641 (35%), Positives = 352/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTTRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPETKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I  ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSHGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  + 
Sbjct: 355 SLWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTRED 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 TELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY K+ I+ DAD DG HI TLL   F +  P+L+  G L++  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKVCILADADSDGLHIATLLCALFVKHFPTLVEEGHLFVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D++ LE  L N        +  +    I++      ++     +  +   
Sbjct: 530 DIGKDVYYALDDDELEVILKN--------VKGNRNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPNHDKTFIEQAVI-SGVFNCESDQEINVSLASKLANRLNF 644
                +  ++ A   +G+ +    ++ +      L  + N 
Sbjct: 582 TRRLVQLDLDDAHFTAGLLDKLLAKKRSADRKQWLEQKGNL 622



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 2/50 (4%)

Query: 723 LDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           L+ I    +  +   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 544 LEVILKNVKGNRNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 593


>gi|240950305|ref|ZP_04754580.1| DNA topoisomerase IV subunit B [Actinobacillus minor NM305]
 gi|240295207|gb|EER46015.1| DNA topoisomerase IV subunit B [Actinobacillus minor NM305]
          Length = 636

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/569 (39%), Positives = 327/569 (57%), Gaps = 15/569 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYATQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E +S  E+I+T+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHKDNSLEVIDNGRGMPVDIHSTEKMSGVELILTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSERVEITIKRNGEIYTIAFANGVKVEDLTVVGSCPKRQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H L+  + L   + I+  DK +      + +Y+ G+  ++S   +  + L
Sbjct: 177 SPKFSVSRLRHLLKAKAVLCPKLTINFTDKINDTQ--ESWYYEDGLSDYLSEALKEYECL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + IT 
Sbjct: 235 PNPPFIGDVTSETEAVSWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGLLKAITE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKGIKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K + +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQIGKTLAELAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AIA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  D+ ++++LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY
Sbjct: 469 MGIDPDNDNLDELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSE 570
            I  GK    Y  DE+  E  L   +  +
Sbjct: 529 RIDIGKDEVHYALDEDEKEAILARLAKKK 557



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 19/97 (19%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ- 772
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++   +  + 
Sbjct: 540 ALDEDEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTFEEREED 599

Query: 773 --ADDLFSRLMGD------EVEPRREFIQENSLPSAL 801
                 F  LM D        E R++++Q     + L
Sbjct: 600 GQDSQTFE-LM-DMLLAKKRSEDRKQWLQNRGNEAEL 634


>gi|88812692|ref|ZP_01127939.1| DNA topoisomerase IV, B subunit [Nitrococcus mobilis Nb-231]
 gi|88790108|gb|EAR21228.1| DNA topoisomerase IV, B subunit [Nitrococcus mobilis Nb-231]
          Length = 630

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 235/645 (36%), Positives = 340/645 (52%), Gaps = 23/645 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y+A SI++L GLD V++RP MY   TD     +H+  EV+DN +DE+L G+AD I V
Sbjct: 2   TKHYNAASIEVLTGLDPVRRRPGMY---TDTTRP-NHLAREVIDNGVDEALAGFADRIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ DGS +VSDNGRG+P DLH EEG+   E+I++RLHAGGKF+Q SY+ SGGLHGVGVS
Sbjct: 58  VLHYDGSLSVSDNGRGMPVDLHPEEGLPGVELILSRLHAGGKFSQHSYQFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  L++ I+R+G  + M F+ G   + L + G+    +TGT + F P +  F   
Sbjct: 118 VVNALSRRLEVTIRRDGQQWRMHFVEGEKCSELELIGALNKVETGTTLRFWPDARYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   LQ+ LR  + L   +++   D+ + E        + G+  ++       + L +
Sbjct: 178 RFSVPRLQYALRAKAVLCPGLRVRFYDEAAQEEFVWYY--EDGLADYLCDTLGPVERLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   Q S    + + A+ W  D        + N IP   GGTH++GLR+ LT  I  + 
Sbjct: 236 PPFLGQMSAAQETAEWALVWLPDAGEAVQESYVNLIPTPQGGTHVNGLRAGLTEAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  E  + +LS+K+ +P+F+ QTKE+L S E  + V   V D  
Sbjct: 296 EFRNLLPRG-VRIAPDDVWERLSFILSVKLENPQFTGQTKERLSSRECAAFVSGVVKDTF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +H   A+ IV  ++  +  R    +      RK V    +LPGKLADC+ +D ++
Sbjct: 355 SLWLNQHIAPAQQIVALIIQNAQRRLRTSKK---VARKRVTSGPALPGKLADCTSQDLRQ 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ RSRE QA++PLRGKILN       +++ SQE+  +  ALG  
Sbjct: 412 TELFLVEGDSAGGSAKQARSREYQAVMPLRGKILNTWEVDPAEVMGSQEVHDIAVALGVE 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G    D+++LRY KI I+ DAD DGAHI TLL   F R  P+L+  G +Y+  PPLY I
Sbjct: 472 PGSA--DLSRLRYGKICILADADPDGAHIATLLCALFLRHFPALVRQGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
             GK   Y  D E      +      + ++         G ++   LR     A      
Sbjct: 530 DVGKQTYYALDGEERRGVLDRVAAENNKAKPQITRFKGLGEMNPKQLRETTMAAET---- 585

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            +        +      + G+           +      +R   +
Sbjct: 586 -RRLVRLTVDSEDAAEQLLGMLLGRRAAAQRRAWLEAKGDRAEVL 629



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 720 CSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD + +   K    + R+KGLGEMN  QL ETT+  +TR L+R+ +     A+ L  
Sbjct: 545 RGVLDRVAAENNKAKPQITRFKGLGEMNPKQLRETTMAAETRRLVRLTVDSEDAAEQLLG 604

Query: 779 RLMG 782
            L+G
Sbjct: 605 MLLG 608


>gi|197336300|ref|YP_002157023.1| DNA topoisomerase IV, B subunit [Vibrio fischeri MJ11]
 gi|197317790|gb|ACH67237.1| DNA topoisomerase IV, B subunit [Vibrio fischeri MJ11]
          Length = 626

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 216/591 (36%), Positives = 319/591 (53%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTVRP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H  E +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  AKKVEVILHADQSLEVIDDGRGMPVDIHPVEKVSGVELILCKLHAGGKFSGKNYEFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YE++F +G   + L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F    F+   L + L+  + L   ++I   DK + +          K  +   V+   
Sbjct: 172 SYFDSAKFSVTRLINNLKAKAVLCPGLEIVFKDKVNDKEHNWCYEDGLKDYLLEGVTGFT 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +          G   + ++       +G       + N IP   GGTH++G+R  L 
Sbjct: 232 LLPEIPFTGAFSGTGEAADWAVTWL---PEGGELVAESYVNLIPTAQGGTHVNGMRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E           +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V 
Sbjct: 289 DAMREFCEFRN-LVPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL E P  A+ + +  +  +       RA     RK +    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNEKPQIAEQLAEACIANAH---RRMRAAKKVVRKKIASGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SVQDLARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS D++ LRY K+ I+ DAD DG HI TLL   + +   +L+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDDLSGLRYGKVCILADADSDGLHIATLLCALYLKHFKALVQAGHVYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  DEE  E  L   S           KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDEEEKEGVLDRLSNKRAKINVQRFKGLGEMNPLQ 573



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 106/284 (37%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  + + L    ++        +K V+ K             D  ++D
Sbjct: 349 VVKDAFSLWLNEKPQIAEQLAEACIANAHRRMRAAKKVVRKKIASGPALPGKLTDCSVQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LAR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S    G +Y ++             +  +   YL    +L+  
Sbjct: 457 ASQEVHDISVALGIDPDSDDLSGLRYGKVCILADADSDGLHIATLLCALYLKHFKALVQA 516

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKG-----------ISMQRYKGLGEMNASQLWE 752
           G          +I     +   +    ++G           I++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDCGKEVFYALDEEEKEGVLDRLSNKRAKINVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I D  Q D++   L+G +  + RR ++Q N
Sbjct: 577 TTMDPNTRRLVQLTIDDDEQTDEMMDMLLGKKRADDRRAWLQSN 620


>gi|315604341|ref|ZP_07879407.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314047|gb|EFU62098.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 706

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 230/659 (34%), Positives = 350/659 (53%), Gaps = 52/659 (7%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S Y+A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+LEGY D I
Sbjct: 8   TDASDYNARHLSVLEGLEAVRKRPGMYIGSTD-HRGLMHCLWEIIDNAVDEALEGYCDTI 66

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S +V+DNGRGIP D+   +G++  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 67  DVRLHPDHSASVADNGRGIPVDIVPGQGLTGVEVVYTKLHAGGKFGGGSYAASGGLHGVG 126

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGI-----------LDNP---------LVVTGS 164
            SVVNALS+ L +++ R G  +EM F  G             ++P         L   G 
Sbjct: 127 ASVVNALSARLDVQVDRGGKTHEMCFRRGEPGEFDDSKQRTPNSPFRPFVDGSTLKTVGK 186

Query: 165 AGN-DTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                TGT V F     IF   + F+++ L  R R+ +FL   + I+  D+R  E    +
Sbjct: 187 VKKSQTGTRVRFWADFQIFPATEGFSWENLLARARQTAFLVPGLTINCYDERGDEEITES 246

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------RDNISIDLA 262
             + GG+  F ++L           I   G+                         +D+A
Sbjct: 247 FRFDGGVVDFANWLANDGAVTDTWHITGSGTYSETVQVLDPESGHLRATEVERTCDVDVA 306

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK---DKRSVIG 319
           +RW  GY  N+  F N I    GGTH++G   A+ + + + ++K+    K          
Sbjct: 307 LRWGIGYDTNLRSFVNIIATPKGGTHVAGFEQAVLKTLRAAIDKNARKLKVGAKDGRPEK 366

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-- 377
           DD + G T+V++++ P+P+F  QTKE L + ++R+VV   V D L A       + K   
Sbjct: 367 DDVQAGMTAVVTVRFPEPQFEGQTKETLGTPQIRTVVNRVVTDWLKAKFASSKRDDKQQT 426

Query: 378 --IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
             +++KV+     R +AR  ++++R+K  L+ +SLP KLADC   D  ++ELF+VEGDSA
Sbjct: 427 SLLMEKVVGEMKARVSARIHKEISRKKNALETSSLPAKLADCRLEDVAETELFIVEGDSA 486

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
            G+AK  R+   QA+ P+RGKILNV++A    ML++ E   +I  +G G G+  FD+++ 
Sbjct: 487 LGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRT-FDLSQA 545

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RY K+I+MTDADVDGAHIRTLLLT FFR M  ++  G +Y   PPL+ I      +  ++
Sbjct: 546 RYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGKGRKKRE 605

Query: 556 EES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 +  +++ L+         K  I +      +D     +  +   + +  +  +
Sbjct: 606 YVYTYSEDELHRKLASLRRSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSLRRITL 664



 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 13/187 (6%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +     ++   ++ AN +  I   S +++  S      ++      V    +    
Sbjct: 508 ILNVQKASTADMLANAECANIIQVIGAGSGRTFDLSQARYGKVILMTDADVDGAHIRTLL 567

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSL------ICNGDKIKITGPCSLLDTIFSIGRKGI 734
               F      + + RI      +  +          + +       L   + S+ R G 
Sbjct: 568 LTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGKGRKKREYVYTYSEDELHRKLASLRRSGR 627

Query: 735 S----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEP 787
           +    +QRYKGLGEM+A QL ETT++   RSL R+ + D      A+D+F  LMG  V P
Sbjct: 628 TWKEPIQRYKGLGEMDADQLAETTMDRAHRSLRRITLADEEALRQAEDVFELLMGSTVGP 687

Query: 788 RREFIQE 794
           RREFI E
Sbjct: 688 RREFIVE 694


>gi|261495914|ref|ZP_05992336.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308435|gb|EEY09716.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 635

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/651 (35%), Positives = 343/651 (52%), Gaps = 24/651 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+AD I
Sbjct: 1   MSEKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGFADKI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+I+T+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G +Y ++F NG+    L V G+     TGT V F P+   F 
Sbjct: 117 ISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+ IDK +      + +Y+ G+  ++S      + +
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTE--ESWYYEDGLSDYLSEALNGYETV 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + +  
Sbjct: 235 PNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTLKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQTGKLIAEMAISSAQSR---MRAAKKVVRKKLVSGPALPGKLADCTAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS ++ +LRY K+ I+ DAD DG HI TLL   F R  P L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I  GK    Y  DE   E  L               K  + +      ++ +   +  +
Sbjct: 529 RIDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTM 581

Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
                   +   +     G  N     D  +    A      L    ++++
Sbjct: 582 DPSTRRLVQLTFDDTAEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEAD 632



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 103/294 (35%), Gaps = 50/294 (17%)

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +     ++         +   ++S        +K V+ K  +          D   +D  
Sbjct: 352 KDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKLVSGPALPGKLADCTAQDLS 411

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
               + F+ +   +G    ++  +   ++       LN             +++  +L  
Sbjct: 412 R--TELFLVEGDSAGGSAKQARDKEYQAILPLRGKILN----------TWEVSSDQVLAS 459

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKR--IFSNRIEENYL-----------TILSLICNGD 712
           +    +     ++  S      +Y +  I ++   +                  L+ NG 
Sbjct: 460 QEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGH 519

Query: 713 ---------KIKI--TGPCSLLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWET 753
                    +I I        LD             +KG  ++QR+KGLGEMN SQL ET
Sbjct: 520 VYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRET 579

Query: 754 TLNPDTRSLLRVKITDASQ-----ADDLFSRLMGDE-VEPRREFIQENSLPSAL 801
           T++P TR L+++   D ++       ++   L+G +  E R++++Q     + L
Sbjct: 580 TMDPSTRRLVQLTFDDTAEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEADL 633


>gi|84496197|ref|ZP_00995051.1| DNA gyrase subunit B [Janibacter sp. HTCC2649]
 gi|84382965|gb|EAP98846.1| DNA gyrase subunit B [Janibacter sp. HTCC2649]
          Length = 715

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 228/599 (38%), Positives = 318/599 (53%), Gaps = 57/599 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +    ++ Y A  +Q+L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+L G+ 
Sbjct: 11  ATTKSSTDYSAHHLQVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNAVDEALGGHG 69

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I V L+ DGS  V D  RGIP D+    G++  EV+ T+LHAGGKF   SY  SGGLH
Sbjct: 70  DRIEVILHKDGSVEVRDVARGIPVDIEPRTGLTGVEVVFTKLHAGGKFGGGSYTASGGLH 129

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL----------------------DNPL 159
           GVG SVVNALS+ L + + R GN Y MSF  G                         + L
Sbjct: 130 GVGASVVNALSARLDVEVDRGGNTYAMSFRRGEPGYFPDVASADKSPDHEFTPYERTSEL 189

Query: 160 VVTGSAGN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--- 214
            + G A    TGT + +     IF    +F+YD L  R R+ SFL   + + + D+R   
Sbjct: 190 AIIGKAKRGVTGTRIRYWADPQIFIRDAEFDYDGLLGRARQTSFLVPGLALVIRDERGLP 249

Query: 215 ----SPEPREITMFYKGGIEAFVSY----------LDRHKKPLMQS---------PIRIQ 251
                  P E    + GGI  +  +                               +  Q
Sbjct: 250 GTAGESGPHEEVFLHDGGISEYAEFLAPDPAVTDVWRLQGTGNFTETVPVLDAKGHMSPQ 309

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGS 310
                  +D+A+RW  GY   V  F N I    GGTH++G   AL +     +E +    
Sbjct: 310 EVERECEVDVAVRWGTGYDAKVSSFVNIIATPKGGTHMAGFEQALLKVFRKQLEVNARRL 369

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K     V  DD   G T+V+++++ +P+F  QTKE L ++ VR++V   +   L+A L  
Sbjct: 370 KVGSDKVDKDDILAGLTAVVTVRLAEPQFEGQTKEVLGTNAVRAIVGRVIEKELTANLTS 429

Query: 371 HPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
                K    ++++KV      R +AR  ++  R+K  L+ +SLP KLADC   D  ++E
Sbjct: 430 TKRGEKQQAAMLLEKVTAEMKSRISARLHKETQRKKNALETSSLPAKLADCRSNDVDRTE 489

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSA G+AK  R+ + QA+LP+RGKILNV++A    ML + E   +I  LG G G
Sbjct: 490 LFIVEGDSALGTAKLARNSDIQALLPIRGKILNVQKASLTDMLGNAECAAIIQVLGAGSG 549

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           +  FD++  RY K+IIMTDADVDGAHIRTLLLT FFR M  L+  G +Y   PPL+ I 
Sbjct: 550 RS-FDVDAARYGKVIIMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAVPPLHRIE 607



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           ++ A  +  +   S +S+         ++      V    +        F      + + 
Sbjct: 535 AECAAIIQVLGAGSGRSFDVDAARYGKVIIMTDADVDGAHIRTLLLTLFFRYMRPLVEAG 594

Query: 696 RIEENYLTILSLI------CNGDKIKITGPCSLLDTIFSIGRKGISM----QRYKGLGEM 745
           R+      +  +         G+ I       +  T+ S+ +KG ++    QRYKGLGEM
Sbjct: 595 RVYAAVPPLHRIEVAGMGARKGELIYTYSEGEMRKTVASLAKKGRNIKQPMQRYKGLGEM 654

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +A QL ETT++P  R+L +V + DA  ++ +F  LMG+EV PRR+FI +    + LD
Sbjct: 655 DADQLAETTMDPHHRTLRKVTMADAEASERIFELLMGNEVAPRRDFIVKG--SARLD 709


>gi|300741336|ref|ZP_07071357.1| DNA gyrase, B subunit [Rothia dentocariosa M567]
 gi|300380521|gb|EFJ77083.1| DNA gyrase, B subunit [Rothia dentocariosa M567]
          Length = 700

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 235/668 (35%), Positives = 339/668 (50%), Gaps = 60/668 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY   I
Sbjct: 1   MAASNYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGYGQSI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + L  DGS  V D+GRGIPTD+    G+S  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 60  QIILYRDGSVEVQDDGRGIPTDVEPRTGLSGLEVVFTKLHAGGKFGGGSYTASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNP-LVVTG 163
            SVVNALSS L +++ R    Y+MSF +G+                      +P L + G
Sbjct: 120 ASVVNALSSRLDVQVDRGSKTYQMSFRHGLPGVFDSGRTPKPEDSFTPADEKHPALQIVG 179

Query: 164 SAGN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---- 217
            A    TGT V +     IF     F+Y+ L  R R+ SFL   ++I++ D+R       
Sbjct: 180 RAKRGVTGTRVRYWADPQIFTPDARFSYEDLVARARQTSFLIPGLRIAIRDERRIPGTPG 239

Query: 218 ---PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------- 253
              P E    + GGI  FV +        +    R  G                      
Sbjct: 240 EFGPYEEVFQHDGGISEFVEF--LAHDSAVTDIWRFSGRGSFTETVPVLGSDGRSKLTEV 297

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK- 312
                +D+A+RW  GY   +  F N I    GGTH +G    L +    ++  +    K 
Sbjct: 298 DRECEVDIALRWGIGYETTIRSFVNIIATPKGGTHATGFEQGLLKTFRKHLADNARKFKV 357

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH- 371
               +  DD   G T+VL++++ +P+F  QTKE L +  VR +V   V D L A L    
Sbjct: 358 GNDKIEKDDALAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDQLKARLNSTA 417

Query: 372 ---PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
                +A  + +KV+     R +AR  ++  RRK  L+ +S+P KL DC   + + SELF
Sbjct: 418 RAEKAQAAALCEKVVSEMKTRISARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELF 477

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSA G+A+  RS   QA+LP+RGKILN +RA    ML++ E   LI  +G G G+ 
Sbjct: 478 IVEGDSALGTARLARSSAYQALLPIRGKILNTQRASVTDMLANAECAALIQVIGAGSGRT 537

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F++   RY K+I+MTDADVDGAHIRTLLLT  +R M  LI +G +Y   PPL+ +    
Sbjct: 538 -FELEAARYSKVIMMTDADVDGAHIRTLLLTLMYRYMRPLIEDGRVYAAVPPLHRVEVIN 596

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             +  +   +  +  +++ LS+        K  I +      +D     +  +   +   
Sbjct: 597 RGKPNEMVYTYSERQLHELLSQLQAEGKGYKEPIQRYKGLGEMDADQLAETTMDPRHRML 656

Query: 609 DKTFIEQA 616
            +  IE A
Sbjct: 657 RRIRIEDA 664



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 6/90 (6%)

Query: 719 PCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
              LL  + + G KG    +QRYKGLGEM+A QL ETT++P  R L R++I DA  A+  
Sbjct: 612 LHELLSQLQAEG-KGYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIRIEDAEAAEQA 670

Query: 777 FSRLMGDEVEPRREFIQENS--LPS-ALDI 803
           FS LMG EV PR+EFI   +  L    +DI
Sbjct: 671 FSLLMGAEVAPRKEFIIAGAHQLDQDNIDI 700


>gi|307255152|ref|ZP_07536970.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259589|ref|ZP_07541314.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862025|gb|EFM94001.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866525|gb|EFM98388.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 637

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/639 (36%), Positives = 346/639 (54%), Gaps = 22/639 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+IMT+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHTDNSLEVIDNGRGMPVDIHSTEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + ++ +D  +      T +Y+ G+  ++S   +  + L
Sbjct: 177 SPRFSASRLRHLLRAKAVLCPKLTLNFVDHINNSS--ETWYYEDGLSDYLSETLKEFECL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + +  
Sbjct: 235 PNPPFIGDVTSETEAVTWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGLLKAMVE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS  + +LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDSDSLEELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I  GK    Y  DE   E  L               K  + +      ++ +   +  +
Sbjct: 529 RIDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTM 581

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  +++  ++      + + +++ LA K A 
Sbjct: 582 DPSTRRLVQLTLDELDVAEENEPNTFEIMDMLLAKKRAE 620



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 8/62 (12%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +   A
Sbjct: 540 ALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDVA 599

Query: 774 DD 775
           ++
Sbjct: 600 EE 601


>gi|307246171|ref|ZP_07528253.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853106|gb|EFM85329.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 637

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/639 (36%), Positives = 346/639 (54%), Gaps = 22/639 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+IMT+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHTDNSLEVIDNGRGMPVDIHSTEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + ++ +D  +      T +Y+ G+  ++S   +  + L
Sbjct: 177 SPRFSASRLRHLLRAKAVLCPKLTLNFVDHINNSS--ETWYYEDGLSDYLSETLKEFECL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + +  
Sbjct: 235 PNPPFIGDVTSETEAVTWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGLLKAMVE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS  + +LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDSDSLEELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I  GK    Y  DE   E  L               K  + +      ++ +   +  +
Sbjct: 529 RIDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTM 581

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  +++  ++      + + +++ LA K A 
Sbjct: 582 DPSTRRLVQLTLDELDVAEENEPNTFEIMDMLLAKKRAE 620



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 16/96 (16%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +   A
Sbjct: 540 ALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDVA 599

Query: 774 D-------DLFSRLMGDE-VEPRREFIQENSLPSAL 801
           +       ++   L+  +  E R++++Q     + L
Sbjct: 600 EENEPNTFEIMDMLLAKKRAEDRKQWLQNRGDEAEL 635


>gi|289827109|ref|ZP_06545898.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 631

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 207/583 (35%), Positives = 305/583 (52%), Gaps = 11/583 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFNGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+ + +     +  +   R  +     K    +    G       R    +
Sbjct: 356 LWLNQNVQAAEQLAEMA--IASAQRRLRADKKSGTTKNSPAVRRCRGNWRTVPRRILIVT 413

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 414 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY KI I+ DAD DG HI TLL   F R   +L+ NG +Y+  PPLY I 
Sbjct: 472 DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRID 531

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            GK + Y   EE     L      +        KG+   N ++
Sbjct: 532 LGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 574



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 103/294 (35%), Gaps = 45/294 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   +++         K   +            +     + 
Sbjct: 349 VVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRADKKSGT----TKNSPAVRRCRGNWRT 404

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                        +++ +F  E D     +  ++       +  K +      +++ ++L
Sbjct: 405 VPRRI-------LIVTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 457

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ N
Sbjct: 458 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKN 517

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
           G          +I     +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 518 GHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 577

Query: 753 TTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDE-VEPRREFIQENSLPSALDI 803
           TTL+P+TR L+++ I+D      + +   L+  +  E RR ++QE    + LD+
Sbjct: 578 TTLDPNTRRLVQLTISDEDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLADLDV 631


>gi|193078690|gb|ABO13748.2| topoisomerase IV subunit B [Acinetobacter baumannii ATCC 17978]
          Length = 628

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/630 (35%), Positives = 348/630 (55%), Gaps = 24/630 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I+ ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  ++
Sbjct: 355 ALWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREE 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPL+ I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D+E LE  L N        +  +    I++      ++     +  +   
Sbjct: 530 DIGKDVHYALDDEELETILKN--------VKGNKNPQITRFKGLGEMNAIQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVS 633
                     +  + +G+ +    ++    
Sbjct: 582 TRRLVQLDLDDAHLTAGLLDKLLAKKRAAD 611



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 721 SLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             L+TI    +  K   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 542 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 593


>gi|330807209|ref|YP_004351671.1| Topoisomerase IV subunit B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375317|gb|AEA66667.1| Topoisomerase IV subunit B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 634

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 230/648 (35%), Positives = 345/648 (53%), Gaps = 16/648 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    + SY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MATPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN Y+M+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGYKATELEVVGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK + E   +   Y+ G+ +++     +
Sbjct: 176 KYFDSPKFSVSRLKHVLKAKAVLCPGLLVSFEDKATGEK--VEWHYEDGLRSYLVDAVNY 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 234 FERLPNEPFCGSLAGNKEAVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLD 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V  
Sbjct: 294 AMREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL  +P     + +  ++ +       +A     RK +    +LPGKLADC+
Sbjct: 353 VVKDAFSLWLNANPETGLALAELAINNA---GRRLKASKKVERKRITQGPALPGKLADCA 409

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  + 
Sbjct: 410 GQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIA 469

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  
Sbjct: 470 VAIGVDPGAA--DMSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAM 527

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  DE   +  L      ++      ++           + +   +D
Sbjct: 528 PPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMD 586

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
              +         F   + +  +   +       S      +    +A
Sbjct: 587 PNTRRLVQLTLDDFEATSEMMDMLLAKKRAGDRKSWLESKGDLAEVLA 634



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEATSEMMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|88797038|ref|ZP_01112628.1| DNA topoisomerase IV, B subunit [Reinekea sp. MED297]
 gi|88779907|gb|EAR11092.1| DNA topoisomerase IV, B subunit [Reinekea sp. MED297]
          Length = 631

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/569 (39%), Positives = 324/569 (56%), Gaps = 14/569 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++Y A++I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L GYAD +
Sbjct: 1   MSQNNYSAEAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALGGYADQV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS +V+DNGRG+P D+H E GI   E+I+TRLH+GGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILYKDGSLSVTDNGRGMPVDIHPEHGIPGVELILTRLHSGGKFSGKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSVVNALS  L++ +KR+G I+ M F  G     + V G     DTGT V F+P +  F 
Sbjct: 117 VSVVNALSEVLEVSVKRDGKIHRMGFKGGEKAMDMEVVGECKKKDTGTTVRFMPDASYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F    L+H LR  + L   ++I+ I++   E    T FY+ G+  +++      + L
Sbjct: 177 TGKFLVSRLKHVLRAKAVLCPGLRINFINEEKDET--DTWFYEDGLRDYLTSTTSAYETL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P     S D  ++D A++W  +G       + N IP   GGTH++GLR  +   +  
Sbjct: 235 PEEPFTGSFSSDEEAVDWAVQWLPEGGEGLFESYVNLIPTPQGGTHVNGLRQGMLEALRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +  + VLS KM DP+F+ QTKE+L S +  + +   V D
Sbjct: 295 FCEYRNLLPRG-VKLSPEDVWDKCSYVLSFKMQDPQFAGQTKERLSSRQASAFISGVVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             + +L +H   A+++ +  +  +  R           RK V    +LPGKLADCS  D 
Sbjct: 354 AFALYLNQHTDIAELLAELAITNANARMRKA---KKVARKKVTTGPALPGKLADCSGNDA 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            + ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+S E+  +  A+ 
Sbjct: 411 MRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSSELLASDEVHNI--AIA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G+  DS  +  LRY K+ I+ DAD DG HI TLL   F R    L+ +G +Y+  PPLY
Sbjct: 469 LGVDPDSESVEGLRYGKVCILADADSDGLHIATLLCALFVRHFRKLVEDGHVYVAMPPLY 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE 571
            +  GK + Y  D++  E  L      ++
Sbjct: 529 RVDIGKEVFYALDDDEREGILNRLKAEKK 557



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 10/81 (12%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +L+ + +  +KG I +QR+KGLGEMN  QL ETT++P+TR L+++ I +  Q  ++  
Sbjct: 546 EGILNRLKAEKKKGKIQIQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIEEGDQTMEIMD 605

Query: 779 RLM-----GDEVEPRREFIQE 794
            L+     GD    R+ +++ 
Sbjct: 606 MLLAKKRSGD----RKIWLES 622


>gi|167854608|ref|ZP_02477389.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis 29755]
 gi|167854363|gb|EDS25596.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis 29755]
          Length = 633

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/645 (35%), Positives = 337/645 (52%), Gaps = 17/645 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A+ I
Sbjct: 1   MSEKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGFANQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+I+T+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHSDNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSESVEITIKRNGEIYTIAFANGVKVEELKVIGSCPKRQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+  D  +      T +Y+ G+  +++   +  + L
Sbjct: 177 SPKFSVSRLRHLLRAKAVLCPKLTINFTDHINNTQ--ETWYYEDGLRDYLTDTLKEYEYL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                  +   +  ++  A+ W     E +   + N IP   GGTH++GLR  L + +  
Sbjct: 235 PNPLFVGEVIGETEAVSWALSWLTEGGEQINESYVNLIPTALGGTHVNGLRQGLFKAMAE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + +           +  DD       VLS+KM +P+F+ QTKE+L S +  S VE+ V D
Sbjct: 295 FCDFRN-LLPKGVKLTADDVWGRCCYVLSLKMQEPQFAGQTKERLSSRQAASYVENSVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK ++   +LPGKLADC  +D 
Sbjct: 354 AFSLWLNQNVQVAEQLAEMAISSAQ---NRLRAEKKVVRKKLVSGPALPGKLADCISQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN      D++L+S E+  +  A+ 
Sbjct: 411 MRTELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVSPDQVLASTEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  D+ DI++LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDNEDISQLRYGKVCILADADSDGLHIATLLCALFLRHFPTLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALKIDK 599
            I  GK    Y  DE   E  L   +  +           G ++ + LR    D      
Sbjct: 529 RIDIGKDEVHYALDESEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRL 588

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +      N D   +    +  +   +   E          +  + 
Sbjct: 589 VQLTLEDNSDDEEVSTFELMDMLLAKKRAEDRKQWLQDRGDEADL 633



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 18/96 (18%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++ + D S  
Sbjct: 540 ALDESEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTLEDNSDD 599

Query: 774 DDL--FSRLMGD------EVEPRREFIQENSLPSAL 801
           +++  F  LM D        E R++++Q+    + L
Sbjct: 600 EEVSTFE-LM-DMLLAKKRAEDRKQWLQDRGDEADL 633


>gi|315122338|ref|YP_004062827.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495740|gb|ADR52339.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 681

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 235/573 (41%), Positives = 344/573 (60%), Gaps = 16/573 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           ++  + +YDA SI+IL+GL+ V+ RP MYIG TD E  LHH+  EV+DNA+DE + G+AD
Sbjct: 36  NHTVSDNYDASSIRILEGLEPVRMRPGMYIGGTD-EKALHHLFSEVIDNAMDEVIAGHAD 94

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           +I V+L+ +G  TV DNGRGIP D H +    S  E+IMT+LHAGGKF+  +Y++SGGLH
Sbjct: 95  LIEVSLDNNGFLTVVDNGRGIPVDNHPKFPDKSTLEIIMTKLHAGGKFDSSTYEISGGLH 154

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS  L++ + R+  ++   F  GI   PL   G   N  GT + F P   I
Sbjct: 155 GVGISVVNALSDELEVTVMRQNTVFSQRFSRGIPLGPLEKIGKVRNKRGTSIKFRPDPKI 214

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISL-----IDKRSPEPREITMFYKGGIEAFVSY 235
           F     FN   L    +  ++L+  V+        I ++   P +   ++ GG++ ++  
Sbjct: 215 FGENASFNASRLVKITKSKAYLSGRVKTYWSCDKQIAEKYNIPEKTEFYFPGGLKTYLQT 274

Query: 236 LDRHKKPLMQSPIRIQGSR---DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
             +++  +       +  R   +  SI+ A+ W +     +  + N I   +GG+H SGL
Sbjct: 275 RLKNRSLISSEIFTGKTERKGSNPGSIEWAIAWCEE-DPEITSYCNTILTDEGGSHESGL 333

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR I  Y E +   +     +  DD       +LS+ +P+P F+ QTK KLVS + 
Sbjct: 334 RVALTRGIRKYAELTQNKRAA--LITSDDIMISAVGILSVFIPEPEFAGQTKTKLVSFDA 391

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE+ + D    +L ++P+E   +++ V++ S  R   R+ ++   RK  +    LPG
Sbjct: 392 QRIVENALRDPFDHYLVKNPVETTKLLEWVIERSEERLRRRKQKE-VNRKTAMRKLRLPG 450

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+   K +ELF+VEGDSAGGSAKQ R+R NQAILPLRGKILNV  A  +K+ +SQ
Sbjct: 451 KLADCSQNMAKGTELFIVEGDSAGGSAKQARNRNNQAILPLRGKILNVASAGLEKIRTSQ 510

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           +I  LI ALG    +  +    LRY K+IIMTDADVDGAHI +LLLTFF+++M  LI   
Sbjct: 511 QISDLIQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYGLIEQK 569

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
            L+++ PPL+ IT+G    Y +DEE  ++ L +
Sbjct: 570 HLFLVSPPLFRITQGSRSIYARDEEHKQEILKD 602



 Score = 90.8 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 7/187 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N  S     +  + ++++ +  +  ++   +       + ++      V    +    
Sbjct: 495 ILNVASAGLEKIRTSQQISDLIQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 554

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737
             F +   Y  I    +      +  +      I          +L      GR  I + 
Sbjct: 555 LTFFYQEMYGLIEQKHLFLVSPPLFRITQGSRSIYARDEEHKQEILKDFREKGRGKIEIN 614

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADDLFSRLMGDEVEPRREFIQ 793
           R+KGLGEM ASQL ET ++   R+LLRV++        +  D   +LMG + + R +FIQ
Sbjct: 615 RFKGLGEMLASQLKETAMDATKRTLLRVELCSDQESFEKTKDSIHKLMGTKADERFKFIQ 674

Query: 794 ENSLPSA 800
           E +    
Sbjct: 675 ERATFVD 681


>gi|303252116|ref|ZP_07338285.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248277|ref|ZP_07530303.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649098|gb|EFL79285.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855211|gb|EFM87388.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 637

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/639 (36%), Positives = 346/639 (54%), Gaps = 22/639 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+IMT+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHTDNSLEVIDNGRGMPVDIHSTEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + ++ +D  +      T +Y+ G+  ++S   +  + L
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTLNFVDHINNSS--ETWYYEDGLSDYLSEALKEFECL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + +  
Sbjct: 235 PNPPFIGDVTSETEAVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS  + +LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDSDSLEELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I  GK    Y  DE   E  L               K  + +      ++ +   +  +
Sbjct: 529 RIDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTM 581

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  +++  ++      + + +++ LA K A 
Sbjct: 582 DPSTRRLVQLTLDELDVAEENEPNTFEIMDMLLAKKRAE 620



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 16/96 (16%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +   A
Sbjct: 540 ALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDVA 599

Query: 774 D-------DLFSRLMGDE-VEPRREFIQENSLPSAL 801
           +       ++   L+  +  E R++++Q     + L
Sbjct: 600 EENEPNTFEIMDMLLAKKRAEDRKQWLQNRGDEAEL 635


>gi|223041848|ref|ZP_03612036.1| DNA topoisomerase IV subunit B [Actinobacillus minor 202]
 gi|223017341|gb|EEF15764.1| DNA topoisomerase IV subunit B [Actinobacillus minor 202]
          Length = 636

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 327/569 (57%), Gaps = 15/569 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYATQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E +S  E+I+T+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHKDNSLEVIDNGRGMPVDIHSTEKMSGVELILTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSERVEITIKRNGEIYTIAFANGVKVEDLTVVGSCPKRQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H L+  + L   + I+  DK +      + +Y+ G+  ++S   +  + L
Sbjct: 177 SPKFSVSRLRHLLKAKAVLCPKLTINFTDKINDTQ--ESWYYEDGLSDYLSEALKEYEYL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + +T 
Sbjct: 235 PNPPFIGDVTSETEAVSWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGLLKAMTE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKGIKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K + +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQIGKTLAELAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AIA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  D+ ++++LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY
Sbjct: 469 MGIDPDNDNLDELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSE 570
            I  GK    Y  DE+  E  L   +  +
Sbjct: 529 RIDIGKDEVHYALDEDEKEAILARLAKKK 557



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 8/53 (15%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ 
Sbjct: 540 ALDEDEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLT 592


>gi|15604098|ref|NP_220613.1| DNA topoisomerase IV subunit B [Rickettsia prowazekii str. Madrid
           E]
 gi|81554898|sp|Q9ZDU7|PARE_RICPR RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|3860790|emb|CAA14690.1| DNA GYRASE SUBUNIT B (gyrB1) [Rickettsia prowazekii]
 gi|292571824|gb|ADE29739.1| DNA topoisomerase IV, B subunit [Rickettsia prowazekii Rp22]
          Length = 662

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/656 (34%), Positives = 349/656 (53%), Gaps = 15/656 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + I  ++Y A  I++L GL+ V+KRP MYIG TD  + +HH++ EVLDNA+DE++ G+A 
Sbjct: 13  NKIVYTNYSAKDIEVLDGLEPVRKRPGMYIGGTDS-NAMHHLVSEVLDNAMDEAVAGFAS 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           II + ++ D S T+ DNGRGIP D H +    SA EVI+T LH+G KF+   Y  SGGLH
Sbjct: 72  IIMIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGSKFSNNVYHTSGGLH 131

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS   K+++ ++G +Y  S+  G     L+   ++    GT + F P  +I
Sbjct: 132 GVGISVVNALSKHFKIKVYKQGKLYSQSYSKGAKLTDLISAEASKRLRGTSINFTPDPEI 191

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---MFYKGGIEAFVSYLD 237
           F     FN   +    R  ++L   V I    +            + +  G++ ++S   
Sbjct: 192 FSEKLHFNPKKIYEIARSKAYLYRGVSIEWECEVEVPSDIPKKALINFPNGLKDYLSSKI 251

Query: 238 RHKKPLMQSPIR--IQGSRDNISIDLAMRWNDG-YHENVLCFTNNIPQKDGGTHLSGLRS 294
                ++       I+ + D+I ++ A+ W +      +  + N +P   GGTH  GL+S
Sbjct: 252 SLDNLVIPEIFSGNIESTVDDIKLEWAICWQNNDTSAFMQSYCNTVPTPQGGTHEQGLKS 311

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+ R + +Y E     K    ++  +D  E  + VLSI + +P F  QTKEKLVS+ V  
Sbjct: 312 AILRGLKAYSEMIGNKKAA--NLTIEDILETASIVLSIFIVEPSFQGQTKEKLVSNGVSK 369

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE+ + D    +L    + A  +++ V+  +  R   +  R+   RK V     LPGKL
Sbjct: 370 LVENIIKDHFDHFLSSDKVLATHLLEHVIAIAEFRRNKKNERN-ISRKSVTQKLRLPGKL 428

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC+    + +ELF+VEGDSAGGSAKQ R+RE QA+LPL GK+LNV  +  +K++++Q I
Sbjct: 429 ADCTRTSAEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIINNQAI 488

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L  AL  G  ++ +    LRY KIIIMTDADVDGAHI +LL+TFFF +MP L+  G L
Sbjct: 489 QDLEIALACGSLKN-YKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHL 547

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ KPPLY +T+   + Y  DEE  E   +   LS+  +   +        ++       
Sbjct: 548 YLAKPPLYRLTQSNKIYYACDEE--EKIKLTYKLSKASKAKIEVGRFKGLGEMMPAQLKE 605

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +    +       +       I      +  ++    +  +   +++ I  K +
Sbjct: 606 TTMHPEKRSLLKVTLEDVQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDQIINKLD 661



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
             +KIK+T        +    +  I + R+KGLGEM  +QL ETT++P+ RSLL+V + D
Sbjct: 569 EEEKIKLTY------KLSKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTLED 622

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP 798
               D +   LMG + E R +FI E +L 
Sbjct: 623 VQNVDKIVDDLMGKKPEKRFQFIYEQALV 651


>gi|16273428|ref|NP_439677.1| DNA topoisomerase IV subunit B [Haemophilus influenzae Rd KW20]
 gi|260580311|ref|ZP_05848140.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae RdAW]
 gi|1172018|sp|P43703|PARE_HAEIN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|1574369|gb|AAC23174.1| topoisomerase IV, subunit B (parE) [Haemophilus influenzae Rd KW20]
 gi|260092988|gb|EEW76922.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae RdAW]
          Length = 632

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 231/644 (35%), Positives = 344/644 (53%), Gaps = 21/644 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G IY+++F NG     L + G+ G   TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPK 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +    N ++  A +   +G       + N IP   GGTH++GLR  L   I  + 
Sbjct: 236 KPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D  
Sbjct: 296 EFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +K
Sbjct: 355 SLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEK 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDKL 600
              K + Y  DE   E     +     +         G ++ + LR    D    ++ +L
Sbjct: 530 DLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQL 589

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 590 TYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            ++LD + +  +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 545 EAILDRLKN--KKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|327482439|gb|AEA85749.1| DNA topoisomerase IV subunit B [Pseudomonas stutzeri DSM 4166]
          Length = 628

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/639 (35%), Positives = 331/639 (51%), Gaps = 15/639 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A++I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  + V L
Sbjct: 2   SYTAEAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHARSVQVIL 57

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + D S  V D+GRG+P D+H EEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+SVV
Sbjct: 58  HQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 117

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDF 187
           NALS+ +++ +KR+GN Y MSF +G   + L V GS    +TGT V F      F    F
Sbjct: 118 NALSTRVEVTVKRDGNEYRMSFADGFKASDLEVIGSVGKRNTGTSVRFWADPKYFDSPKF 177

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +   L+H L+  + L   + +S  DK + E   +   Y+ G+ +++       + L   P
Sbjct: 178 SISRLKHVLKAKAVLCPGLSVSFEDKSTGEK--VEWHYEDGLRSYLVDSVSEYQRLPDEP 235

Query: 248 IRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                + +  ++D A +   +G       + N IP   GGTH++GLR  L   +  + E 
Sbjct: 236 FVGALAGNTEAVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEF 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   V D  S 
Sbjct: 296 RNLLPRG-LKLAPEDIWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSL 354

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           WL  HP     + +  +  +       +A     RK +    +LPGKLADC+ +DP ++E
Sbjct: 355 WLNAHPELGMQLAELAISNA---GRRLKAGKKVERKKITQGPALPGKLADCAGQDPMRAE 411

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G   G
Sbjct: 412 LFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDPG 471

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
               D+ +LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  PPLY I  
Sbjct: 472 AT--DLAQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPPLYRIDL 529

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK + Y  DE   +  L      +       ++           + +   +D   +    
Sbjct: 530 GKDIFYALDEAERDGILERLVAEKRRGKPQVTRFKGLGEMNPPQLRE-TTMDPNTRRLVQ 588

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
                F     +  +   +       S      N    +
Sbjct: 589 LTLDDFEGAREVMDMLLAKKRAGDRKSWLESKGNLAEVL 627



 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ + +  R+G   + R+KGLGEMN  QL ETT++P+TR L+++ + D   A ++   L
Sbjct: 545 ILERLVAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEGAREVMDML 604

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 605 LAKKRAGD----RKSWLES 619


>gi|209696078|ref|YP_002264008.1| DNA topoisomerase IV subunit B [Aliivibrio salmonicida LFI1238]
 gi|208010031|emb|CAQ80354.1| topoisomerase IV subunit B [Aliivibrio salmonicida LFI1238]
          Length = 626

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 215/591 (36%), Positives = 321/591 (54%), Gaps = 21/591 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H  E +S  E+I+ +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  AKKVEVILHADQSLEVIDDGRGMPVDIHPVEKVSGVELILCKLHAGGKFSGKNYEFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G IYE++F +G   + L V G+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGEIYEIAFEHGEKVSDLTVVGTCGRRNRGTSVHFWPDT 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F    F+   L + L+  + L   ++I   DK + +  +       K  +   V+   
Sbjct: 172 SYFDSPKFSVSRLVNNLKAKAVLCPGLEIVFKDKVNDKEYQWCYEDGLKDYLLEGVAGYT 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
              +         +G   + ++       +G       + N IP   GGTH++G+R  L 
Sbjct: 232 LLPEIPFTGAFLGKGEAADWAVTWL---PEGGELVSESYVNLIPTAQGGTHVNGMRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +  + + 
Sbjct: 289 DAMREFCEFRNLLPRG-VKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFIS 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             + D  S WL E P  A++I +  +  +       RA     RK +    +LPGKL DC
Sbjct: 348 GVLKDAFSLWLNEKPQIAELIAEACIANAH---RRMRAAKKVVRKKIASGPTLPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  ++ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +
Sbjct: 405 SIQDLARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHNI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS D++ LRY K+ I+ DAD DG HI TLL   + +   SL+  G +Y+ 
Sbjct: 465 --SVALGIDPDSDDLSGLRYGKVCILADADSDGLHIATLLCALYLKHFTSLVRAGHVYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            PPLY I  GK + Y  DE   E  L   S           KG+   N L+
Sbjct: 523 MPPLYRIDCGKEVFYALDEAEKEGVLERLSNKRAKINVQRFKGLGEMNPLQ 573



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 104/284 (36%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  + + +    ++        +K V+ K             D  I+D
Sbjct: 349 VLKDAFSLWLNEKPQIAELIAEACIANAHRRMRAAKKVVRKKIASGPTLPGKLTDCSIQD 408

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 409 LAR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 456

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S    G +Y ++             +  +   YL   + +   
Sbjct: 457 ASQEVHNISVALGIDPDSDDLSGLRYGKVCILADADSDGLHIATLLCALYLKHFTSLVRA 516

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        R  I++QR+KGLGEMN  QL E
Sbjct: 517 GHVYVAMPPLYRIDCGKEVFYALDEAEKEGVLERLSNKRAKINVQRFKGLGEMNPLQLRE 576

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I D  + +++   L+G +  + RR ++Q N
Sbjct: 577 TTMDPNTRRLVQLTIDDDEKTNEMMDMLLGKKRADDRRAWLQSN 620


>gi|313619194|gb|EFR90965.1| DNA topoisomerase 4 subunit B [Listeria innocua FSL S4-378]
          Length = 477

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 218/483 (45%), Positives = 312/483 (64%), Gaps = 12/483 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPVIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNY+TL  RLRE +FL   + I L+D+R       +  ++ G++ FV Y++  K  
Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIQLVDERVG--MAESFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +  +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHP-VVSFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            R+P K+EL+LVEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474

Query: 479 TAL 481
             +
Sbjct: 475 HTV 477


>gi|19909581|dbj|BAB86986.1| DNA gyrase subunit B [Caulobacter leidyia]
          Length = 471

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 290/471 (61%), Positives = 370/471 (78%), Gaps = 13/471 (2%)

Query: 45  IYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           ++EV DNAIDE+L G+ D I + LN DGS +V DNGRGIPT +H EEG+SAAEVIMT+LH
Sbjct: 1   VFEVSDNAIDEALAGHCDKIIIQLNPDGSVSVEDNGRGIPTGIHSEEGVSAAEVIMTQLH 60

Query: 105 AGGKF----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           AGGKF    +  +YKVSGGLHGVGVSVVNALS WL L I R+G  + M F  G    PL 
Sbjct: 61  AGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLDLNIWRDGEEHYMRFAYGDATAPLK 120

Query: 161 VTGSAGN-DTGTEVTFLPSSDIFS--------VQDFNYDTLQHRLRELSFLNSSVQISLI 211
           V G+A     GT VTFL S++             +++++ L+HR REL+FLNS V++ L 
Sbjct: 121 VIGTAPEGKKGTRVTFLASTEKTPGDGGTFKNQIEYDFEKLEHRYRELAFLNSGVRLFLR 180

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D R  + +E+ ++Y+GGI AFV +LDR+K+PLM  P+ I G+RD+++ID+A+ WND Y+E
Sbjct: 181 DARHEDVKEVELYYEGGIAAFVKWLDRNKQPLMPDPVAIAGTRDDVTIDVALEWNDSYYE 240

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+  R+ALTR I +Y +KS   KK+K ++ GDD REG T+++S
Sbjct: 241 NVLCFTNNIPQRDGGTHLAAFRAALTRTINNYADKSGALKKEKVTLTGDDMREGLTAIVS 300

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+PDP+FSSQTK+KLVSSEVR  +ES + D L+ +LEE+P  A++I++KV+DA+  R+A
Sbjct: 301 VKLPDPKFSSQTKDKLVSSEVRQPLESLMADKLAEYLEENPANARMIIQKVIDAAAAREA 360

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A++AR+LTRRKGV+DIASLPGKLADC ERDP KSELFLVEGDSAGGSAKQGR R  QAIL
Sbjct: 361 AKKARELTRRKGVMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRHFQAIL 420

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           PLRGKILNVERARFD+MLSS+EIGTLI A+GTGIG+D F++ KLRYHKI+I
Sbjct: 421 PLRGKILNVERARFDRMLSSREIGTLIQAMGTGIGRDDFNLEKLRYHKIVI 471


>gi|184159873|ref|YP_001848212.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii ACICU]
 gi|183211467|gb|ACC58865.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter baumannii
           ACICU]
          Length = 628

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 228/642 (35%), Positives = 351/642 (54%), Gaps = 25/642 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHADKICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V    +    TGT V F P +  F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I+ ID+ + E  E     + G+  ++    + ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPN 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  D  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-LKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     S      + A+    RK ++   +LPGKLADC  +  ++
Sbjct: 355 ALWLNQHAEIAMQLAEMA--ISKAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREE 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML-SSQEIGTLITALGT 483
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L SSQE+  +  A+G 
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASSQEVHDIAIAIGV 471

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
             G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPL+ 
Sbjct: 472 DPGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFR 529

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  D+E LE  L N        +  +    I++      ++     +  +  
Sbjct: 530 IDIGKDVHYALDDEELETILKN--------VKGNKNPQITRFKGLGEMNAIQLRETTMDP 581

Query: 604 FYPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                      +  + +G+ +    ++        L  + N 
Sbjct: 582 NTRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGNL 623



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 721 SLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             L+TI    +  K   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 543 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 594


>gi|294631850|ref|ZP_06710410.1| DNA gyrase, B subunit [Streptomyces sp. e14]
 gi|292835183|gb|EFF93532.1| DNA gyrase, B subunit [Streptomyces sp. e14]
          Length = 707

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 232/683 (33%), Positives = 350/683 (51%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G  D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGVCDHIEVV 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+    G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDGSVEVRDNGRGIPVDVEPRTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL--------------DNPLVVTGS-AGNDTGTE 172
           VNALS+ L + + R G+ + +SF  G+                + L        + TGT 
Sbjct: 140 VNALSARLDVEVDRGGHTHAISFRRGVPGAFTGSGPEAKFEATSGLRKVKKIPKSRTGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V +     IF      + +TL  R R+ +FL   + I + D+          E +  + G
Sbjct: 200 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRDEFGLGEGGSKGEESFRFDG 259

Query: 228 GIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  YL   +              +  + +      ++         +D+A+RW  G
Sbjct: 260 GISEFCEYLANDRPVCDVLRLSGQGTFKETVPVLDEHGQMTPTEVTRELGVDVALRWGTG 319

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   +  F N I    GGTH++G   A+T+ +   +      +  +  ++ DD  EG T+
Sbjct: 320 YDTTLRSFVNIIATPKGGTHVAGFEQAVTKTMNEVLRAKKLLRVAEDDIVKDDALEGLTA 379

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP----LEAKIIVKKVLD 384
           V+++++ +P+F  QTKE L ++  R +V + ++  L A+L         +A+++++K + 
Sbjct: 380 VVTVRLAEPQFEGQTKEVLGTAAARRIVNNVISKELKAFLTSTKRDAAQQARVVMEKAVA 439

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+
Sbjct: 440 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARN 499

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FD++  RY KII+MT
Sbjct: 500 SEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT-FDLDAARYGKIIMMT 558

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDG+HIRTLLLT F R M  ++ +G ++   PPL+ I     +    +YV      E
Sbjct: 559 DADVDGSHIRTLLLTLFHRYMRPMVESGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDRE 618

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +   + DS          +    A              + + +E A    
Sbjct: 619 LRDKLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINLSDLEAAEQVF 678

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                +D        +  A  L+
Sbjct: 679 DLLMGNDVAPRKEFIASSAATLD 701



 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L D +     K I    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 608 DKYVYTYSDRELRDKLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 667

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           ++D   A+ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 668 LSDLEAAEQVFDLLMGNDVAPRKEFIASSA--ATLD 701


>gi|88705315|ref|ZP_01103026.1| DNA topoisomerase IV subunit B; gyrase B [Congregibacter litoralis
           KT71]
 gi|88700405|gb|EAQ97513.1| DNA topoisomerase IV subunit B; gyrase B [Congregibacter litoralis
           KT71]
          Length = 628

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/566 (39%), Positives = 319/566 (56%), Gaps = 14/566 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y +DSI++L GL+ V+KRP MY   TD     +H+  E++DN++DE+L G+A  I V 
Sbjct: 2   SDYSSDSIEVLTGLEPVRKRPGMY---TDTTRP-NHLAQEIIDNSVDEALAGFARQIDVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +  D+GRG+P D+H E+     EVI++ LHAGGKF+ K+Y+ SGGLHGVGVSV
Sbjct: 58  LHTDGSLSACDDGRGMPVDMHPEQKKPGVEVILSTLHAGGKFSSKNYQFSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  L + I+R+G ++EMSF  G   + L V  S    +TGT V F P    F   +
Sbjct: 118 VNALSKQLTVTIRRDGQVHEMSFAGGEKTSELKVIDSCGKRNTGTMVRFTPDPQYFDSIN 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L H LR  + L   ++++ +D++  E      FY+ G+  ++         +  +
Sbjct: 178 FSVPRLMHVLRAKAVLCPGLRVTFLDEKKNEK--EEWFYEDGLTDYLLSATEGFPTVPAA 235

Query: 247 PIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P     S    ++D A++W  +G       + N IP   GGTH++GLR+ L   +  + E
Sbjct: 236 PFTGSFSGSTEAVDWAVQWLPEGGELITESYVNLIPTAQGGTHVNGLRTGLLDAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  DD  E  + VLS K+ DP+FS QTKE+L S E  + V     D  S
Sbjct: 296 LRSLLPRG-VKLAPDDIWERCSYVLSSKLEDPQFSGQTKERLSSREAAAFVSGVAKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL +H  +A+ + +  ++ +  R  + +      RK V    +LPGKLADCS  D  ++
Sbjct: 355 LWLNQHTGDAEALAELCINTAQRRLRSAKK---VVRKKVSAGPALPGKLADCSGEDISRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN       ++L+SQE+  +  ++  GI
Sbjct: 412 ELFLVEGDSAGGSAKQARDRETQAILPLRGKILNTWEVDSQEILASQEVHNI--SVALGI 469

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
                D+  LRY K+ I+ DAD DG HI TL+   F R   +L+  G +Y+  PPLY I 
Sbjct: 470 DPADDDLTGLRYGKVCILADADSDGLHIATLICALFVRHFRALVSAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE 571
            GK + Y  DE   +  L      ++
Sbjct: 530 IGKEVFYALDEGEKQGILDRIEAEKK 555



 Score = 90.8 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 16/102 (15%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +  G+K  I      LD I +  ++G +++QR+KGLGEMN  QL ETT++ 
Sbjct: 529 DIGKEVFYALDEGEKQGI------LDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMSA 582

Query: 758 DTRSLLRVKITDASQADDLFSRLM-----GDEVEPRREFIQE 794
           DTR L+++++    + +++   L+     GD    R+ +++ 
Sbjct: 583 DTRRLVQLRLEAGDETNEVLDMLLAKKRAGD----RKSWLET 620


>gi|213418970|ref|ZP_03352036.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 552

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 291/554 (52%), Positives = 384/554 (69%), Gaps = 8/554 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIV 417

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G +YI +PPLY + +GK  QY+KD+E+++ Y I+ +L             +S   L  
Sbjct: 418 ERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEK 477

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
            + +     K+I        K  +++ V             +    ++  N L  I E +
Sbjct: 478 LVSEYNATQKMIGRMERRFPKALLKELVYQPTLTE--ADLSDEQTVTRWVNAL--ITELN 533

Query: 650 EKSWHGSINNSDIL 663
           EK  HGS    D+ 
Sbjct: 534 EKEQHGSQWKFDVH 547


>gi|302524596|ref|ZP_07276938.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
 gi|302433491|gb|EFL05307.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
          Length = 697

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 231/681 (33%), Positives = 353/681 (51%), Gaps = 41/681 (6%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              + Y AD +  L+GL+AV+KRP MYIG TD   G++H+  EV+DN+ DE + G+A  I
Sbjct: 16  TAETLYGADDLTHLEGLEAVRKRPGMYIGSTDS-RGINHLFSEVVDNSTDEGVAGHATRI 74

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V D+GRGIPT +H + G+S  E+++TRLHAGGKF    YK SGGLHGVG
Sbjct: 75  VVTLHADGSVQVDDDGRGIPTGVHAKSGLSGVELVLTRLHAGGKFGGSGYKTSGGLHGVG 134

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL---DNP-----------LVVTGSAGN--D 168
            S VNALS    + +K+ G +++MSF +G+    D P           L + G       
Sbjct: 135 ASAVNALSHRFDVTVKQNGKVHQMSFAHGVPGVFDGPGPKAKFTRRSGLNLVGKMKRGER 194

Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           +GT + +   +  F      + + ++ +LR  +FL   V   L         E T  +  
Sbjct: 195 SGTSIRYWYDARYFETGAALDVEGVRTKLRNTAFLVPGVTYVLRTTFEDTINEETFHFPN 254

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGS------------------RDNISIDLAMRWNDGY 269
           G+   V +L    +  +   + I G                     +  +++A+RW  GY
Sbjct: 255 GLADMVDFLAPDSEKPVCGTLMITGEGTYKENAADANGVMQSNVERHAEVEVALRWGTGY 314

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK-SFGSKKDKRSVIGDDCREGFTS 328
              V CFTN I    GGTH  G   A+TR +   + K     K  +     +D  EG T+
Sbjct: 315 ERTVECFTNTIRNVHGGTHRRGFDRAVTRALQDAIGKTRGLLKAKEDPPTTEDVLEGMTA 374

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE--EHPLEAKIIVKKVLDAS 386
           V+ +++P+P+F+SQTK++L ++ +  V++  V+  + AW E  +   EAKI+++KV+DA+
Sbjct: 375 VIHVRLPEPQFTSQTKDELSTAGITRVLQGIVDKQVRAWTEDRKTKSEAKIVLQKVVDAA 434

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
            VR   ++ +D  RRK  L+ A++P KL DC      +SELFLVEGDSA GSA+  R  E
Sbjct: 435 RVRLTQKQQKDAARRKTALEGAAMPPKLVDCRTTGVSRSELFLVEGDSALGSARMARVSE 494

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QA+LPLRGKILNV++A     L + EI +++  LG G G+  FD++ +RY ++I+M DA
Sbjct: 495 YQALLPLRGKILNVQKASLGDTLKNAEIASIVQVLGAGTGRT-FDLSTMRYGRVILMADA 553

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLIN 565
           DVDG+HIRTLL+T F + M  +I +G LY   PPL+ I T+G+  + +      E     
Sbjct: 554 DVDGSHIRTLLITLFAKYMRPVIEDGRLYAAMPPLHKITTKGRGSETIFTFTQREMEQKV 613

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
             L    +               +  +                    +E A ++      
Sbjct: 614 AELEAAGKQVVTPVPRFKGLGEMDADELWETTMNPATRSVRRITLEDVEAAELALELLMG 673

Query: 626 SDQEINVSLASKLANRLNFIA 646
              E   +   + ++R++  A
Sbjct: 674 EKVEPRRNWLVESSDRVDRDA 694



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 11/106 (10%)

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTR 760
            TI +      + K+         + + G++ ++ + R+KGLGEM+A +LWETT+NP TR
Sbjct: 599 ETIFTFTQREMEQKVA-------ELEAAGKQVVTPVPRFKGLGEMDADELWETTMNPATR 651

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           S+ R+ + D   A+     LMG++VEPRR ++ E+S      A+D+
Sbjct: 652 SVRRITLEDVEAAELALELLMGEKVEPRRNWLVESSDRVDRDAIDV 697


>gi|239994107|ref|ZP_04714631.1| DNA topoisomerase IV subunit B [Alteromonas macleodii ATCC 27126]
          Length = 631

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/640 (34%), Positives = 330/640 (51%), Gaps = 22/640 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y++D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   SNQYNSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHASNIKV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEGIS  E+I+ +LHAGGKF+ K+Y  SGGLHGVG+S
Sbjct: 58  ILHEDQSLEVIDDGRGMPVDIHPEEGISGVELILCKLHAGGKFSNKNYAFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +++ I+R+ N+Y+++F NG     L V  +    +TGT V F P    F   
Sbjct: 118 VVNALSTRVEVTIRRDSNVYQIAFENGDKVEDLQVIDTCGKRNTGTRVHFWPDPQYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H LR  + L+  ++I   +K + E +E     + G++ ++       + L  
Sbjct: 178 KFSASRLVHNLRAKAVLSPGLRIRFDNKITKESQEWYY--EDGLKDYLYQAVEEFETLPS 235

Query: 246 SPIRI-----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
               +          + ++   M   +G       + N IP   GGTH++GLR  L   +
Sbjct: 236 DTPFVGTFSGNTEAADWAV---MWLPEGGDLVTESYVNLIPTAQGGTHVNGLRQGLLESM 292

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      +    +  DD  +    +LS KM DP+F+ QTKE+L S +  + V   V
Sbjct: 293 REFCEFRNLMPRG-VKLSPDDIWDRCAYILSTKMQDPQFAGQTKERLSSRQASAFVSGVV 351

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL +H   A+ + +  ++ +  R    +      RK V    +LPGKL DCS +
Sbjct: 352 KDAFSLWLNQHTEIAEALAEMCINNAQRRLRQTKK---VARKKVTQGPALPGKLTDCSSQ 408

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D   SELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQEI  +  +
Sbjct: 409 DISYSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDI--S 466

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +  GI  DS D++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PP
Sbjct: 467 VALGIDPDSTDLSGLRYGKICILADADSDGLHIATLLCALFVRHFRTLVEQGHVYVAMPP 526

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           L+ I  GK + Y  DE   +  L      ++       +           + +   +   
Sbjct: 527 LFRIDVGKEVYYALDEGEKQGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRE-TTMGPN 585

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            +       +   E   +  +   +       +      N
Sbjct: 586 TRRLVQLTIEDAEEMMELMDMLLAKKRSGDRKTWLESKGN 625



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 18/111 (16%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +  G+K  I      LD I +  ++G +++QR+KGLGEMN  QL ETT+ P
Sbjct: 531 DVGKEVYYALDEGEKQGI------LDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMGP 584

Query: 758 DTRSLLRVKITDASQADDLFSRLM-----GDEVEPRREFIQE--NSLPSAL 801
           +TR L+++ I DA +  +L   L+     GD    R+ +++   N    AL
Sbjct: 585 NTRRLVQLTIEDAEEMMELMDMLLAKKRSGD----RKTWLESKGNMAEVAL 631


>gi|311113416|ref|YP_003984638.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa
           ATCC 17931]
 gi|310944910|gb|ADP41204.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa
           ATCC 17931]
          Length = 700

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 234/668 (35%), Positives = 336/668 (50%), Gaps = 60/668 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S+Y A  + +L+GL+AV+KRP MYIG TD   GL   ++E++DN++DE+L GY   I
Sbjct: 1   MAASNYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMQCLWEIIDNSVDEALAGYGQSI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + L  DGS  V D+GRGIPTD+    G+S  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 60  QIILYRDGSVEVQDDGRGIPTDVEPRTGLSGLEVVFTKLHAGGKFGGGSYTASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNP-LVVTG 163
            SVVNALSS L +++ R    Y+MSF +G+                      +P L + G
Sbjct: 120 ASVVNALSSRLDVQVDRGSKTYQMSFRHGLPGVFDSGRTPKPEDSFTPADEKHPALQIVG 179

Query: 164 SAGN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---- 217
            A    TGT V +     IF     F+Y+ L  R R+ SFL   ++I++ D+R       
Sbjct: 180 RAKRGVTGTRVRYWADPQIFTPDARFSYEDLVARARQTSFLIPGLRIAIRDERRIPGTPG 239

Query: 218 ---PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------- 253
              P E    + GGI  FV +        +    R  G                      
Sbjct: 240 EFGPYEEVFQHDGGISEFVEF--LAHDSAVTDIWRFSGRGSFTETVPVLGSDGRSKLTEV 297

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK- 312
                +D+A+RW  GY   +  F N I    GGTH +G    L +    ++  +    K 
Sbjct: 298 DRECEVDIALRWGIGYETTIRSFVNIIATPKGGTHSTGFEQGLLKTFRKHLADNARKFKV 357

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               V  DD   G T+VL++++ +P+F  QTKE L +  VR +V   V D L A L    
Sbjct: 358 GNDKVEKDDALAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDQLKARLNSTA 417

Query: 373 LEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
              K     + +KV+     R +AR  ++  RRK  L+ +S+P KL DC   + + SELF
Sbjct: 418 RAEKAQATALCEKVVSEMKTRISARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELF 477

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSA G+A+  RS   QA+LP+RGKILN +RA    ML++ E   LI  +G G G+ 
Sbjct: 478 IVEGDSALGTARLARSSAYQALLPIRGKILNTQRASVTDMLANAECAALIQVIGAGSGRT 537

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            F++   RY K+I+MTDADVDGAHIRTLLLT  +R M  LI +G +Y   PPL+ +    
Sbjct: 538 -FELEAARYSKVIMMTDADVDGAHIRTLLLTLMYRYMRPLIEDGRVYAAVPPLHRVEVIN 596

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             +  +   +  +  +++ L +        K  I +      +D     +  +   +   
Sbjct: 597 RGKPNEMVYTYSERQLHELLGQLQAEGKGYKEPIQRYKGLGEMDADQLAETTMDPRHRML 656

Query: 609 DKTFIEQA 616
            +  IE A
Sbjct: 657 RRIRIEDA 664



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 6/90 (6%)

Query: 719 PCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
              LL  + + G KG    +QRYKGLGEM+A QL ETT++P  R L R++I DA  A+  
Sbjct: 612 LHELLGQLQAEG-KGYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIRIEDAEAAEQA 670

Query: 777 FSRLMGDEVEPRREFIQENS--LPS-ALDI 803
           FS LMG EV PR+EFI   +  L    +DI
Sbjct: 671 FSLLMGAEVAPRKEFIIAGAHQLDQDNIDI 700


>gi|261493164|ref|ZP_05989695.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311167|gb|EEY12339.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 635

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 233/651 (35%), Positives = 342/651 (52%), Gaps = 24/651 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+AD I
Sbjct: 1   MSEKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGFADKI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+I+T+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G +Y ++F NG+    L V G+     TGT V F P+   F 
Sbjct: 117 ISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+ IDK +      + +Y+ G+  ++S      + +
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTE--ESWYYEDGLSDYLSEALNGYETV 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L +    
Sbjct: 235 PNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKATVE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D
Sbjct: 295 FCEIHN-LLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTLKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQTGKLIAEMAISSAQSR---MRAAKKVVRKKLVSGPALPGKLADCTAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 SRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS ++ +LRY K+ I+ DAD DG HI TLL   F R  P L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            I  GK    Y  DE   E  L               K  + +      ++ +   +  +
Sbjct: 529 RIDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTM 581

Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650
                   +   +     G  N     D  +    A      L    ++++
Sbjct: 582 DPSTRRLVQLTFDDTAEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEAD 632



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 103/294 (35%), Gaps = 50/294 (17%)

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +     ++         +   ++S        +K V+ K  +          D   +D  
Sbjct: 352 KDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKLVSGPALPGKLADCTAQDLS 411

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
               + F+ +   +G    ++  +   ++       LN             +++  +L  
Sbjct: 412 R--TELFLVEGDSAGGSAKQARDKEYQAILPLRGKILN----------TWEVSSDQVLAS 459

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKR--IFSNRIEENYL-----------TILSLICNGD 712
           +    +     ++  S      +Y +  I ++   +                  L+ NG 
Sbjct: 460 QEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGH 519

Query: 713 ---------KIKI--TGPCSLLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWET 753
                    +I I        LD             +KG  ++QR+KGLGEMN SQL ET
Sbjct: 520 VYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRET 579

Query: 754 TLNPDTRSLLRVKITDASQ-----ADDLFSRLMGDE-VEPRREFIQENSLPSAL 801
           T++P TR L+++   D ++       ++   L+G +  E R++++Q     + L
Sbjct: 580 TMDPSTRRLVQLTFDDTAEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEADL 633


>gi|70734049|ref|YP_257689.1| DNA topoisomerase IV subunit B [Pseudomonas fluorescens Pf-5]
 gi|68348348|gb|AAY95954.1| DNA topoisomerase IV, B subunit [Pseudomonas fluorescens Pf-5]
          Length = 634

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 234/648 (36%), Positives = 342/648 (52%), Gaps = 16/648 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    + SY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MATPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  AKSIQVILHADHSLEVSDDGRGMPVDIHPEEGVSGIELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN Y+M+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSNQVRVRVKRDGNEYQMTFADGYKATELEVVGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E   +   Y+ G+ +++      
Sbjct: 176 KYFDSPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEK--VEWHYEDGLRSYLVDAVSE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 234 FERLPAEPFCGSLAGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLD 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  E    VLS+KM D +FS QTKE+L S E  + V  
Sbjct: 294 AMREFCEFRNLLPRG-LKLAPEDVWERIAFVLSMKMQDAQFSGQTKERLSSREAAAFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL  +P     + +  +  +       +A     RK +    +LPGKLADC+
Sbjct: 353 VVKDAFSLWLNANPELGMQLAELAISNA---GRRLKASKKVERKRITQGPALPGKLADCA 409

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  + 
Sbjct: 410 GQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIA 469

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G +  D+++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  
Sbjct: 470 VAIGVDPGAE--DMSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAM 527

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  DE   +  L      ++      ++           + +   +D
Sbjct: 528 PPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMD 586

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
              +             A I  +   +       S      N    +A
Sbjct: 587 PNTRRLVQLTLDDVEATAEIMDMLLAKKRAGDRKSWLESKGNLAEVLA 634



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     ++   L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATAEIMDML 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLES 625


>gi|297202866|ref|ZP_06920263.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083]
 gi|197715205|gb|EDY59239.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083]
          Length = 707

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 238/683 (34%), Positives = 347/683 (50%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIEVI 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL--------------DNPLVVTGS-AGNDTGTE 172
           VNALS+ L + + R GN + +SF  G+                + L  T       TGT 
Sbjct: 140 VNALSARLDVEVDRAGNTHAISFRRGVPGAFAANGPDAKFDAASGLRKTKRIPKTRTGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V +     IF      + D L  R R+ +FL   + I + D+          E +  + G
Sbjct: 200 VRYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRDEYGLGEGGSKGEESFRFDG 259

Query: 228 GIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  YL   K              +  + +      ++         +D+AMRW  G
Sbjct: 260 GISEFCEYLASDKPVNDVLRFSGQGSFKETVPVLDDHGQMTPTEVTRELGVDVAMRWGTG 319

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   +  F N I    GGTH++G   A+T+ +   +      +  +  ++ DD  EG T+
Sbjct: 320 YDTTLRSFVNIIATPKGGTHVAGFEQAVTKTMNEVLRAKKMLRVAEDDIVKDDALEGLTA 379

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL----EAKIIVKKVLD 384
           V+++++ +P+F  QTKE L +S  R +V + ++  L A+L         +A+++++K + 
Sbjct: 380 VVTVRLAEPQFEGQTKEVLGTSAARRIVNTVISKELKAFLTSTKRDAAAQARVVMEKAVS 439

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+
Sbjct: 440 AARTRIAARQHKDAQRRKTALETSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARN 499

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KII+MT
Sbjct: 500 SEFQALLPIRGKILNVQKSSVTDMLKNVECGAIIQVIGAGSGRT-FDIDAARYGKIIMMT 558

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDG+HIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      E
Sbjct: 559 DADVDGSHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDRE 618

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +   + DS          +    A              +   +E A    
Sbjct: 619 LREKLLEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINLADLEAAEQVF 678

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                +D        S  A  L+
Sbjct: 679 DLLMGNDVAPRKEFISGSAATLD 701



 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L + +     KG+    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 608 DKYVYTYSDRELREKLLEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 667

Query: 767 ITDASQADDLFSRLMGDEVEPRREFI 792
           + D   A+ +F  LMG++V PR+EFI
Sbjct: 668 LADLEAAEQVFDLLMGNDVAPRKEFI 693


>gi|115380006|ref|ZP_01467056.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1]
 gi|115362985|gb|EAU62170.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1]
          Length = 616

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/568 (39%), Positives = 335/568 (58%), Gaps = 12/568 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG-SCTVSDNGRGIPTDLH 88
           MYIG TD  +G HH+++E+LDN++DE + G+A  + VTL+ D  + TV DNGRGIP D+ 
Sbjct: 1   MYIGGTD-GTGYHHLLWEILDNSVDEVINGHASTVEVTLHKDSRTITVVDNGRGIPVDIM 59

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
            +    A EVI+T LHAGGKF Q +Y  SGGLHGVG SVVNAL+  L + IKREG  +  
Sbjct: 60  PKLKKPAVEVILTTLHAGGKFEQGNYIHSGGLHGVGSSVVNALARKLLVEIKREGKRHVQ 119

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQ 207
            +  G    PL V G A   TGT +TF P  +IF     F+ + ++ RL   S+L+  + 
Sbjct: 120 HYARGKATTPLKVEGPA-RGTGTSITFEPDPEIFGEKLKFDPELIRERLEAKSYLHKGMT 178

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP---IRIQGSRDNISIDLAMR 264
           +   D+ +     +T  + GGI  +++ +   +   +  P   +        + ++ A+ 
Sbjct: 179 VVWKDETASPATSVTYKHDGGIAEYLNKVVAERNKPVVPPGGAVFYHARDSEVRLEAALV 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           W +   EN+  + N IP   GGTH +GLR A+ + + +Y+E          ++  +D RE
Sbjct: 239 WTEATDENIRSYVNGIPTPQGGTHEAGLRGAVVKAVRNYIETHN-LSPKGVTLTAEDIRE 297

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T++LS  + +P+F  QTK +L + EV + V+  +   L  WL ++    +  V +++ 
Sbjct: 298 GITAILSCYVVEPQFQGQTKGRLNNPEVTAQVDGVLRPALEKWLNDNKSIGEAAVARIIL 357

Query: 385 ASMVRDAARRARDLTRRKG-VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           A+  R+A+R A     RK  V    +LPGKLADCS  +P  SELFLVEGDSAGGSAKQGR
Sbjct: 358 AARAREASRAASQAVSRKTAVSHRLNLPGKLADCSSTEPSTSELFLVEGDSAGGSAKQGR 417

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            R  QAILPLRGK+LN E+A  DK+ +++E+  +++ALG GIG D FD++KLRY +I ++
Sbjct: 418 DRRTQAILPLRGKVLNAEQASTDKVATNKELQDIVSALGCGIGSD-FDLSKLRYGRIFLL 476

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
            DAD DG HI TLLLTFF+R +  LI +G ++I +PPLY +  GK   +  DE   +  +
Sbjct: 477 MDADSDGHHIATLLLTFFYRHLRPLIESGAVHIAQPPLYKVEIGKETYWALDEADRDRIV 536

Query: 564 INQSLSEE--IELFCDSKGVISKNDLRN 589
             ++        +     G ++ ++L+ 
Sbjct: 537 REKAKGNAKPNIMRFKGLGEMTADELKT 564



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++ R+KGLGEM A +L  TTL+P  R  L+V I +  + D + + L+G +V  R +FI E
Sbjct: 547 NIMRFKGLGEMTADELKTTTLDPHKRMSLQVTIDNPLETDRVINDLLGKDVSARFKFIME 606

Query: 795 NSLPS-ALD 802
            +     LD
Sbjct: 607 RAGEVQDLD 615


>gi|297180059|gb|ADI16284.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), b
           subunit [uncultured bacterium HF0010_16H03]
          Length = 633

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 212/636 (33%), Positives = 326/636 (51%), Gaps = 15/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   SYDA +I++L GLD V+KRP MY  DT   +   H+I EVLDN++DE+L G+   I
Sbjct: 1   MAKKSYDAQAIEVLSGLDPVRKRPGMYT-DTSNPN---HLIQEVLDNSVDEALSGHCSNI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +  DG+  +SDNGRG+P D+H E  +S  E+I+ +LHAG KF+   Y  SGGLHGVG
Sbjct: 57  KINILKDGNIKISDNGRGMPVDIHPEHNVSGVELILCKLHAGAKFSGDDYNFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           VSVVNALS  L++ ++R    Y++ F NG   + L   G  G  +TGT + F P+   F 
Sbjct: 117 VSVVNALSERLEVNVRRNSKEYQIIFENGHKVSELKEVGEVGIRNTGTSIIFRPNPVYFE 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +     L+H L+  + L   + +   +++ P+ +E    ++ G+++++       + +
Sbjct: 177 NIEVQIKALKHLLKAKAVLCPGLTLEFANEKKPKDKEKWY-FEDGLKSYLLESAEGAELI 235

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVL--CFTNNIPQKDGGTHLSGLRSALTRQIT 301
           +   I          ++ A+ W+    +N L   + N IP   GG+HL+G +S L   I 
Sbjct: 236 LDESIVCSKEGKGQELEFAINWSQRLPKNKLDETYVNLIPTAQGGSHLNGFKSGLLDSIK 295

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + +           +  DD       ++S K+ +P+F+ QTKE+L S +  S V S   
Sbjct: 296 EFCDYRN-LLPKGLKINADDVINNAIFIVSSKLQNPQFAGQTKERLDSKDHMSFVSSVTK 354

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL  H  E + I +  + ++       +A ++  RK      +LPGKL+DC+ +D
Sbjct: 355 DTFSIWLNTHTEEGEKIAELAVISAQ---TRAKASNIIERKKTFKGPALPGKLSDCNSQD 411

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
             ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN       +++ SQEI  L TA+
Sbjct: 412 LNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESSEIIKSQEIKNLSTAI 471

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G   G +  D++ LRY KI I+ DAD DG HI TLL   F R    L+  G +YI  PPL
Sbjct: 472 GVLPGNN--DLSSLRYGKICILADADSDGLHIATLLCALFLRHYKPLVQEGRIYISMPPL 529

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I  GK + Y  D+   E  + N    +        +         + + + + +D   
Sbjct: 530 YRIDCGKDVLYAVDDVQREKVISNFQNKKGKSKINIQRFKGLGEMNPSQLRETV-MDPET 588

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +        +      +  +   + +         K
Sbjct: 589 RLLVKLSLSSSDNANSMMDLLLSKKNASARKEWLEK 624



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
             G+  I++QR+KGLGEMN SQL ET ++P+TR
Sbjct: 557 KKGKSKINIQRFKGLGEMNPSQLRETVMDPETR 589


>gi|303250664|ref|ZP_07336861.1| truncated DNA topoisomerase IV subunit B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650652|gb|EFL80811.1| truncated DNA topoisomerase IV subunit B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 570

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/568 (39%), Positives = 313/568 (55%), Gaps = 13/568 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+IMT+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHADNSLEVIDNGRGMPVDIHSTEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+ +D  +                  +  +    P 
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTINFVDHINNNSETWYYEDGLSDYLSEALKEFECLPN 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                 +    + +S  L     +G       + N IP   GGTH++GLR+ L + +  +
Sbjct: 237 PPFIGDVISETEAVSWALT-WLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVEF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D 
Sbjct: 296 CEIHN-LLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVAL 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS  + +LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSDSLEELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLYR 529

Query: 544 ITRGKSL-QYVKDEESLEDYLINQSLSE 570
           I  GK    Y  DE   E  L   +  +
Sbjct: 530 IDIGKDEVHYALDEAEKEAILARLAKKK 557


>gi|325271262|ref|ZP_08137804.1| DNA topoisomerase IV subunit B [Pseudomonas sp. TJI-51]
 gi|324103599|gb|EGC00904.1| DNA topoisomerase IV subunit B [Pseudomonas sp. TJI-51]
          Length = 634

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 233/645 (36%), Positives = 341/645 (52%), Gaps = 16/645 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   S+Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASAYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN Y+M+F +G   + L V GS    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E   +   Y+ G+ +++      
Sbjct: 176 KYFDSPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEK--VEWHYEDGLRSYLVDSVNE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 234 FQRLPDEPFCGSLAGNKEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGLLD 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  E  T VLS+KM DP+FS QTKE+L S E  + V  
Sbjct: 294 AMREFCEFRNLLPRG-VKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL  HP     + +  +  +       +A     RK +    +LPGKLADC+
Sbjct: 353 VVKDAFSLWLNAHPELGMQLAELAISNA---GRRLKASKKVERKRITQGPALPGKLADCA 409

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  + 
Sbjct: 410 GQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIA 469

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+ +LRY KI I+ DAD DG HI TLL   F +   +L+  G +Y+  
Sbjct: 470 VAIGVDPGAT--DLAQLRYGKICILADADSDGLHIATLLCALFVQHFRALVEAGHVYVAM 527

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  DE   +  L      ++      ++           + +   +D
Sbjct: 528 PPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRE-TTMD 586

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
              +               +      +       +      N   
Sbjct: 587 PNTRRLVQLTLDDVQATCELMDKLLAKKRAGDRKNWLETKGNLAE 631



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     +L  +L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVQATCELMDKL 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKNWLET 625


>gi|93007238|ref|YP_581675.1| DNA topoisomerase IV subunit B [Psychrobacter cryohalolentis K5]
 gi|92394916|gb|ABE76191.1| DNA topoisomerase IV subunit B [Psychrobacter cryohalolentis K5]
          Length = 628

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/644 (34%), Positives = 326/644 (50%), Gaps = 25/644 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y+A S+++L+GL+ V++RP MY   TD     +H+  EV+DN++DE+L GYA  I V 
Sbjct: 2   SQYNAQSLEVLEGLEPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGYAKTIKVQ 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V D+GRG+PTD+H E   S  E+I+TRLHAGGKF+  +Y+VSGGLHGVG+SV
Sbjct: 58  LHSDGSLSVEDDGRGMPTDIHPEFNQSGIELILTRLHAGGKFSTSNYEVSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++ + R+   ++M+F NG    PL     S     GT+V F      F    
Sbjct: 118 VNALSTRVEVTVWRDSTQFDMAFENGAPVTPLTEAVSSNKRKRGTKVHFWADGSFFDTPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN   L+H L+  + L + + I   D  + E          G+  ++S      + L ++
Sbjct: 178 FNVKQLKHNLKAKAVLAAGLTIEFTDDINDEKVVWQF--TDGVVEYLSEQLDGLETLPEA 235

Query: 247 PIRIQ-----GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P         G R  I+  L+    DG       + N IP   GGTH++GLR+ +   + 
Sbjct: 236 PFYYNYDAKAGERAAITFALS-WLPDGGTPVQESYVNLIPTAQGGTHVNGLRTGILEALR 294

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + +      +    +  +D  +G   +LS+K  +P+FS QTKE+L S E    V++   
Sbjct: 295 EFCDIHNLLPRS-VKLTAEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAGAVQTLAK 353

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL +H      I +     S      + A+    RK +    +LPGKLADC    
Sbjct: 354 DAFSLWLNQHADMGTQIAELA--ISKAGRRLKSAKK-VARKKITQGPALPGKLADCRGDL 410

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELFLVEGDSAGGSAKQ R R  QAILPLRGKILN      D +LSSQEI  +  A+
Sbjct: 411 RDGAELFLVEGDSAGGSAKQARDRHYQAILPLRGKILNTWEVSSDTVLSSQEIHDIAIAI 470

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G      S D+++LRY K+ I+ DAD DG HI TL+   F +  P+L+  G L++  PPL
Sbjct: 471 GVDP--ASDDLSELRYDKVCILADADSDGLHIATLICALFVKHFPALVDAGHLFVAMPPL 528

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y +   K + Y  DE  L+  L N   + +         G +S   LR        +++ 
Sbjct: 529 YRVDVAKEVHYALDETELQHILANVPGNKKAQITRFKGLGEMSAEQLRET-----TMNRD 583

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +          +    +  +   +              N  + 
Sbjct: 584 TRRLVQLDMDDMVLTNSVMDMLLAKKRAADRKIWLEDKGNLADI 627



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           L  I +   G K   + R+KGLGEM+A QL ETT+N DTR L+++ + D    + +   L
Sbjct: 546 LQHILANVPGNKKAQITRFKGLGEMSAEQLRETTMNRDTRRLVQLDMDDMVLTNSVMDML 605


>gi|226953356|ref|ZP_03823820.1| topoisomerase IV subunit B [Acinetobacter sp. ATCC 27244]
 gi|226835894|gb|EEH68277.1| topoisomerase IV subunit B [Acinetobacter sp. ATCC 27244]
          Length = 627

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 225/641 (35%), Positives = 346/641 (53%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+A+ +TVT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHANQVTVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYEDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R GN+Y+M+F  G    PL V     A   TGT V F P +  F   
Sbjct: 118 VNALSTRVEVAVQRHGNLYQMAFEQGEPVAPLSVLEGKVAKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I   DK + E  E     + G+  ++      ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYDDKINNEKIEWQF--ENGLVDYLMDELEDREILPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  +  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQAERAACEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-MKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASNIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     +      + A+    RK ++   +LPGKLADC     + 
Sbjct: 355 ALWLNQHAEIATQLAEMA--IAKAGRRLKAAKK-VERKKIVAGPALPGKLADCVGLTRED 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+  G LY+  PPLY I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPTLVEEGHLYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D++ LE  L N           +    I++      ++ +   +  +   
Sbjct: 530 DIGKDVHYALDDDELEAILKNIK--------GNKNPQITRFKGLGEMNASQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++        L  + N 
Sbjct: 582 TRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKHWLEQKGNL 622



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           L+ I     G K   + R+KGLGEMNASQL ETT++P+TR L+++ + DA
Sbjct: 544 LEAILKNIKGNKNPQITRFKGLGEMNASQLRETTMDPNTRRLVQLDLDDA 593


>gi|26991593|ref|NP_747018.1| DNA topoisomerase IV subunit B [Pseudomonas putida KT2440]
 gi|24986682|gb|AAN70482.1|AE016689_10 DNA topoisomerase IV, B subunit [Pseudomonas putida KT2440]
          Length = 634

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 231/573 (40%), Positives = 330/573 (57%), Gaps = 15/573 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   S+Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASAYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN Y+M+F +G   + L V GS    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E   +   Y+ G+ +++      
Sbjct: 176 KYFDSPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEK--VEWHYEDGLRSYLVDSVNE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 234 FQRLPDEPFCGSLAGNKEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGLLD 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  E  T VLS+KM DP+FS QTKE+L S E  + V  
Sbjct: 294 AMREFCEFRNLLPRG-VKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL  HP     + +  +  +       +A     RK +    +LPGKLADC+
Sbjct: 353 VVKDAFSLWLNAHPELGMQLAELAISNA---GRRLKASKKVERKRITQGPALPGKLADCA 409

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  + 
Sbjct: 410 GQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIA 469

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+ +LRY KI I+ DAD DG HI TLL   F +   +L+  G +Y+  
Sbjct: 470 VAIGVDPGAT--DLAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAM 527

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           PPLY I  GK + Y  DE   +  L      ++
Sbjct: 528 PPLYRIDLGKEIYYALDEAERDGILDRLVAEKK 560



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     +L  +L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKL 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLET 625


>gi|71893389|ref|YP_278835.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae J]
 gi|71851516|gb|AAZ44124.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae J]
          Length = 642

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 230/648 (35%), Positives = 361/648 (55%), Gaps = 15/648 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y  + +++LKGL+AV+KRP MYIG TD  +GLH +I+E+ DNAIDE++ G+A+ I++ +
Sbjct: 2   TYSVEKLKLLKGLEAVRKRPGMYIGSTDK-NGLHQLIWEIFDNAIDEAIAGFANEISLII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S  +SDNGRGIPT++HK+ G +  E++ + LH+G KF+   YK +GGLHGVG SVV
Sbjct: 61  NSDNSIEISDNGRGIPTEIHKKTGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L++ I R+  ++  SFING               TGT++ F P   +FS  +F+
Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSATTGTKIRFWPDFSLFSHSEFD 180

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
            + +  RLRE  FL ++++I+  D  +    E     + GIE+F+ +L+  ++ +    I
Sbjct: 181 SEMIISRLRETCFLINNLKINFFD--TKNNIEKKFLCERGIESFIEFLNNDQEKIHDKVI 238

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +     I ++   ++ +   EN++ F NN+    GG+H +G +S   + I +Y +++ 
Sbjct: 239 TFKEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKAINTYGQQNN 298

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
             K  K+ +   D + G ++VLS+++P+    F  QTK KL +   ++V E  +   L  
Sbjct: 299 LLKT-KQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEEVIFTNLMT 357

Query: 367 WLEEHPLEAKIIVKKVLD--ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +   +   A  I+  +L+      +         T +    +   L GKL   + +    
Sbjct: 358 FFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMN 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEG+SAGGSAK  R+RE QAILPL+GKI+N ++ R   +L ++EI  +I+ALGTG
Sbjct: 418 RELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISALGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG  +F++  L Y KIIIMTDAD DGAHI+ L+LTF F  M  LI  GF+YI +PPLY I
Sbjct: 478 IG-QNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIAQPPLYRI 536

Query: 545 -TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI--DDALKIDKLI 601
             +G+   Y+ DEE  E Y+ N   +          G ++ N L       +   ++K++
Sbjct: 537 SEKGRKDIYIWDEEKFEKYIKNS--TNLQIQRYKGLGEMNANQLWQTTMDPERRTLEKVL 594

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAEK 648
            + YP  +K F               ++ +N SL  K    L     +
Sbjct: 595 IENYPKVEKNFQILMGERADLRKSWIEKNVNFSLEDKFIENLKETIYE 642



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 46/62 (74%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +QRYKGLGEMNA+QLW+TT++P+ R+L +V I +  + +  F  LMG+  + R+ +I+
Sbjct: 562 LQIQRYKGLGEMNANQLWQTTMDPERRTLEKVLIENYPKVEKNFQILMGERADLRKSWIE 621

Query: 794 EN 795
           +N
Sbjct: 622 KN 623


>gi|307257307|ref|ZP_07539077.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864157|gb|EFM96070.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 637

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 227/638 (35%), Positives = 335/638 (52%), Gaps = 20/638 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+I+T+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHTDNSLEVIDNGRGMPVDIHSTEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG+    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + ++ +D  +                  +  +    P 
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTLNFVDHINNSSETWYYEDGLSDYLSEALKEFECLPN 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                 +    + +S  L     +G       + N IP   GGTH++GLR+ L + +  +
Sbjct: 237 PPFIGDVISETEAVSWALT-WLPEGGELVAESYVNLIPTAQGGTHVNGLRNGLLKAMVEF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D 
Sbjct: 296 CEIHN-LLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNVQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVAL 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS  + +LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDSDSLEELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLYR 529

Query: 544 ITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           I  GK    Y  DE   E  L               K  + +      ++ +   +  + 
Sbjct: 530 IDIGKDEVHYALDEAEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTMD 582

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                  +  +++  ++     ++ + +++ LA K A 
Sbjct: 583 PSTRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAE 620



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 16/96 (16%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +   A
Sbjct: 540 ALDEAEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDVA 599

Query: 774 D-------DLFSRLMGDE-VEPRREFIQENSLPSAL 801
           +       ++   L+  +  E R++++Q     + L
Sbjct: 600 EENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAEL 635


>gi|239928501|ref|ZP_04685454.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC 14672]
 gi|291436826|ref|ZP_06576216.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC 14672]
 gi|291339721|gb|EFE66677.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC 14672]
          Length = 707

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 234/683 (34%), Positives = 349/683 (51%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDRIEVV 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDN--------------PLVVTGS-AGNDTGTE 172
           VNALS+ L + + R G+ + +SF  G+                  L        + +GT 
Sbjct: 140 VNALSARLDVEVDRGGHTHAISFRRGVPGAFAAGGPDGKFEAGNGLRKVKKIPKSRSGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V +     IF      + +TL  R R+ +FL   + I + D+          E +  + G
Sbjct: 200 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRDEYGLGEGGSKGEESFRFDG 259

Query: 228 GIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  +L   +              +  + +      ++         +D+A+RW  G
Sbjct: 260 GISEFCEFLATDRPVCDTLRFTGQGTFKETVPVLDEHGQMTPTEVTRELGVDVALRWGTG 319

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   V  F N I    GGTH++G   A+ + +   +      +  +  ++ DD  EG T+
Sbjct: 320 YDATVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRAKKMLRVAEDDIVKDDALEGLTA 379

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP----LEAKIIVKKVLD 384
           V+++++ +P+F  QTKE L +S  R +V + V+  L A+L         +A+++++K + 
Sbjct: 380 VVTVRLAEPQFEGQTKEVLGTSAARRIVNTVVSRELKAFLTSTKRDAAQQARVVLEKAVA 439

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ ++LP KLADC   +  +SELF+VEGDSA G+AK  R+
Sbjct: 440 AARTRIAARQHKDAQRRKTALESSTLPAKLADCRSDNVDRSELFIVEGDSALGTAKLARN 499

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KII+MT
Sbjct: 500 SEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKIIMMT 558

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDG+HIRTLLLT F R M  ++  G ++   PPL+ I     +    +YV      E
Sbjct: 559 DADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIELVQPKRGQEKYVYTYSDRE 618

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +   + DS          +    A              + T +E A    
Sbjct: 619 LRDKLMEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINLTDLEAAEQVF 678

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                +D        S  A  L+
Sbjct: 679 DLLMGNDVAPRKEFISSSAATLD 701



 Score =  133 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 12/177 (6%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           ++    +  I   S +++         ++      V    +               + + 
Sbjct: 527 AECGAIIQVIGAGSGRTFDIDAARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAG 586

Query: 696 RIEENYLTILSLI----CNGDKIKIT--GPCSLLDTIFSIGRKGI----SMQRYKGLGEM 745
           R+      +  +       G +  +       L D +     KG+    S+QRYKGLGEM
Sbjct: 587 RVFAAVPPLHRIELVQPKRGQEKYVYTYSDRELRDKLMEFQSKGVRYKDSIQRYKGLGEM 646

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +A QL ETT++P  R+L R+ +TD   A+ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 647 DADQLAETTMDPRHRTLRRINLTDLEAAEQVFDLLMGNDVAPRKEFISSSA--ATLD 701


>gi|77165746|ref|YP_344271.1| DNA topoisomerase IV subunit B [Nitrosococcus oceani ATCC 19707]
 gi|254433384|ref|ZP_05046892.1| DNA topoisomerase IV, B subunit [Nitrosococcus oceani AFC27]
 gi|76884060|gb|ABA58741.1| DNA topoisomerase IV subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207089717|gb|EDZ66988.1| DNA topoisomerase IV, B subunit [Nitrosococcus oceani AFC27]
          Length = 628

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 228/589 (38%), Positives = 319/589 (54%), Gaps = 18/589 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + +YDA +I++L GLD V+KRP MY   TD +   +H+  EV+DN++DE++ G+A  I V
Sbjct: 2   SGNYDAAAIEVLTGLDPVRKRPGMY---TDTQRP-NHLAQEVIDNSVDEAIAGFATQIDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DGS TV D+GRG+P DLH EE +   EVI+TRLHAGGKF+ KSY+ +GGLHGVGVS
Sbjct: 58  VLQPDGSLTVCDDGRGMPVDLHPEERLPGVEVILTRLHAGGKFSSKSYRFAGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS L++ ++REG  Y ++F NG   + L         +TGT + F P    F   
Sbjct: 118 VVNALSSRLEVWVRREGCEYHIAFANGERVSALKAINKVGKRNTGTVLRFWPDPVFFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H LR  + L   + ++  D  + E   +   Y+ G+ A++    R    L  
Sbjct: 178 KFAVARLKHILRAKAVLCPGLCVTFSDVATGET--VNWRYQEGLLAYLRDELRELSYLPD 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +   +   +  A  W  +G       + N IP   GGTH++GLR+ +   +  + 
Sbjct: 236 PPFTGEMQGNTEEVCWAFTWLPEGGEVVTESYVNLIPTPQGGTHVNGLRAGMLEAVREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  DD  +  + VLS+K+ DP+FS QTKE+L S E  S V   V D  
Sbjct: 296 EFRN-LLPKGVKLAPDDVWDRVSYVLSVKLLDPQFSGQTKERLSSRECASFVSGVVKDSF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +H +  + I +  +  +  R    +      RK +    +LPGKLADC+ ++   
Sbjct: 355 SLWLNQHVVTGETIAELAIGNAQRRLRQAKK---VVRKRIQAGPALPGKLADCTSQEVSL 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQGR R  QAI+PLRGKILN       ++L+SQE+  +  ALG  
Sbjct: 412 TELFLVEGDSAGGSAKQGRDRVFQAIMPLRGKILNTWEIDSAQVLASQEVHNIAVALGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D   ++ LRY KI I+ DAD DGAHI  LL   FFR    L+  G +Y+  PPLY I
Sbjct: 472 PGSD--KLDSLRYGKICILADADSDGAHIAALLSALFFRHFRPLVEAGHIYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             GK + Y  DE       +     +   +         G ++   LR 
Sbjct: 530 DVGKRVFYALDEAERQGVLDRIAAERIKGKINIQRFKGLGEMNPMQLRE 578



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 5/62 (8%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLR--VKITDASQADDLFS 778
           +LD I +   KG I++QR+KGLGEMN  QL ETT+ P+TR L+R  V   D    D L  
Sbjct: 547 VLDRIAAERIKGKINIQRFKGLGEMNPMQLRETTMAPETRRLVRLTVTPND--DPDQLLD 604

Query: 779 RL 780
           RL
Sbjct: 605 RL 606


>gi|312601000|gb|ADQ90255.1| Topoisomerase IV subunit B [Mycoplasma hyopneumoniae 168]
          Length = 642

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 228/648 (35%), Positives = 361/648 (55%), Gaps = 15/648 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y  + +++LKGL+AV+KRP MYIG TD  +GLH +I+E+ DNAIDE++ G+A+ I++ +
Sbjct: 2   TYSVEKLKLLKGLEAVRKRPGMYIGSTDK-NGLHQLIWEIFDNAIDEAIAGFANEISLII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S  +SDNGRGIPT++HK+ G +  E++ + LH+G KF+   YK +GGLHGVG SVV
Sbjct: 61  NSDNSIEISDNGRGIPTEIHKKTGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L++ I R+  ++  SFING               TGT++ F P   +FS  +F+
Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSTITGTKIRFWPDFSLFSHSEFD 180

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
            + +  RLRE  FL ++++I+  D  +    E     + GIE+F+ +L+  ++ +    I
Sbjct: 181 SEMIISRLRETCFLINNLKINFFD--TKNNIEKKFLCERGIESFIEFLNNDQEKIHDKII 238

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +     I ++   ++ +   EN++ F NN+    GG+H +G +S   + I +Y +++ 
Sbjct: 239 TFKEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKAINNYGQQNN 298

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
             K  K+ +   D + G ++VLS+++P+    F  QTK KL +   ++V E  +   L  
Sbjct: 299 LLKT-KQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEEVIFTNLMT 357

Query: 367 WLEEHPLEAKIIVKKVLD--ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +   +   A  I+  +L+      +         T +    +   L GKL   + +    
Sbjct: 358 FFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMN 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEG+SAGGSAK  R+RE QAILPL+GKI+N ++ R   +L ++EI  +I+ALGTG
Sbjct: 418 RELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISALGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG  +F++  L Y KIIIMTDAD DGAHI+ L+LTF F  M  LI  GF+YI +PPLY I
Sbjct: 478 IG-QNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIAQPPLYRI 536

Query: 545 -TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI--DDALKIDKLI 601
             +G+   Y+ DEE  E Y+ N   +          G ++ N L       +   ++K++
Sbjct: 537 SEKGRKDIYIWDEEKFEKYIKNS--TNLQIQRYKGLGEMNANQLWQTTMDPERRTLEKVL 594

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAEK 648
            + YP  ++ F               ++ ++ SL  K    L     +
Sbjct: 595 IENYPKVEENFQILMGERADLRKSWIEKNVDFSLEDKFIENLKETIYE 642



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 47/62 (75%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +QRYKGLGEMNA+QLW+TT++P+ R+L +V I +  + ++ F  LMG+  + R+ +I+
Sbjct: 562 LQIQRYKGLGEMNANQLWQTTMDPERRTLEKVLIENYPKVEENFQILMGERADLRKSWIE 621

Query: 794 EN 795
           +N
Sbjct: 622 KN 623


>gi|326561292|gb|EGE11651.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 46P47B1]
 gi|326567837|gb|EGE17941.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 12P80B1]
 gi|326573752|gb|EGE23710.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis O35E]
          Length = 629

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/643 (34%), Positives = 332/643 (51%), Gaps = 23/643 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y++  +++L+GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I V 
Sbjct: 2   STYNSQKLEVLEGLEPVRRRPGMY---TDTMRP-NHLAQEVIDNSVDEALAGFARHIIVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V D+GRG+PTD+H E   S  E+I+TRLHAGGKF+ ++Y+VSGGLHGVG+SV
Sbjct: 58  LHKDGSLSVEDDGRGMPTDIHPEFNQSGVELILTRLHAGGKFSTENYQVSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++ + R+G ++ M+F +G     L+   SA     GT+V F      F    
Sbjct: 118 VNALSTRVEVTVWRDGLMHTMAFEHGEPVTALIADKSANKKKRGTKVQFWVDGQYFDTPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+  TL+H L+  + L + + I  I +  P     +  +  G+  +++        L + 
Sbjct: 178 FSIKTLKHNLKAKAVLAAGLHIDFISEIEP-NDSESWQFTDGVVQYLTEQLDGSDTLPKE 236

Query: 247 PIRIQ-----GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P  +      G R   +  L+    +G       + N IP   GGTH++GLR+ +   + 
Sbjct: 237 PFYVSQEPTLGERGGATFALS-WLAEGGTPITESYVNLIPTAQGGTHVNGLRTGVLEALR 295

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + +      +    + G+D  +G   +LS+K  +P+FS QTKE+L S E   +V++   
Sbjct: 296 EFCDIHNLLPRQ-IKLSGEDVWDGVNYILSLKFVEPQFSGQTKERLSSREAAPLVQTLAK 354

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL +HP  AK I +  +  +  R A  +      RK V    +LPGKL DC    
Sbjct: 355 DAFSLWLNQHPDHAKAIAELAISKATKRLATAQK---VARKKVTQGPALPGKLWDCRGGL 411

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            + SELFLVEG SAGGSAKQ R    QAILPLRGKILN      D +LSSQEI  +  A+
Sbjct: 412 KEGSELFLVEGQSAGGSAKQARDNAFQAILPLRGKILNAWEVSSDTVLSSQEIHDIAIAI 471

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G      S D+++LRY KI I+ DAD DG HI TL+   F +  P+LI  G LY+  PPL
Sbjct: 472 GVDP--ASDDLSELRYDKICILADADSDGLHIATLICALFVKHFPALIEAGHLYVAVPPL 529

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I  GK + Y  D E LE  L      +         G ++ + L+        ++   
Sbjct: 530 YRIDAGKDVYYALDNEELEQVLARLGNKKTQITRFKGLGEMNPSQLKET-----TMNPDT 584

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +               I  +   +              +  + 
Sbjct: 585 RKLIRLDLDDTASTNSIMDMLLAKKRSADRKQWLETKGDLADI 627



 Score = 90.8 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 721 SLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             L+ + + +G K   + R+KGLGEMN SQL ETT+NPDTR L+R+ + D +  + +   
Sbjct: 545 EELEQVLARLGNKKTQITRFKGLGEMNPSQLKETTMNPDTRKLIRLDLDDTASTNSIMDM 604

Query: 780 L 780
           L
Sbjct: 605 L 605


>gi|71279877|ref|YP_270827.1| DNA topoisomerase IV subunit B [Colwellia psychrerythraea 34H]
 gi|71145617|gb|AAZ26090.1| DNA topoisomerase IV, B subunit [Colwellia psychrerythraea 34H]
          Length = 628

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/638 (34%), Positives = 329/638 (51%), Gaps = 20/638 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D      Y++DSI++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTDQ-----YNSDSIEVLSGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I+V L  D S  + D+GRG+PTD+H EEG+S  E+I  +LHAGGKF+ KSY+ SGGL
Sbjct: 52  AQNISVILEKDQSLEIIDDGRGMPTDIHPEEGVSGVELIFCKLHAGGKFSNKSYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ + + ++R+  +YEM+F NG     L  TG+    +TGT V F P +
Sbjct: 112 HGVGISVVNALSTRVDVSVRRDSKVYEMAFENGDKVEELRETGTVGKRNTGTSVKFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L H L+  + L   + I   DK   +  +     + G+  ++    + 
Sbjct: 172 SYFDTSKFSVRHLTHLLKAKAVLCPGLTIKFHDKIEDKKYQWCY--EDGLTDYLKDSVKD 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P     +    + D A+ W  +G       + N IP   GGTH++G+R  L  
Sbjct: 230 YVSLPEDPFVGSFTSQLEAADWAVTWLPEGGESIGESYVNLIPTIAGGTHVNGMRQGLLE 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E           +  DD  +  + +LSIKM DP+F+ QTKE+L S +  + V  
Sbjct: 290 SMREFCEFR-HLLPRGVKLTPDDIWDKCSYILSIKMQDPQFAGQTKERLSSRQCAAFVSG 348

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL EH  +A+++    ++ +       RA     RK +    +LPGKL DC 
Sbjct: 349 VVKDAFSLWLNEHTDKAELLADFCINNAQ---KRMRASKKVVRKKITQGPALPGKLTDCG 405

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D  ++ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+S E+  + 
Sbjct: 406 SQDLARTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSGQILASVEVHDI- 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ++  GI  DS D+++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  
Sbjct: 465 -SVALGIDPDSDDLSELRYGKICILADADSDGLHIATLLCALFMQHFLPLVQAGHVYVAM 523

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  DE   +  L      ++       +           + +   +D
Sbjct: 524 PPLYRIDIGKEVFYALDEAEKDGILDRIEAEKKRGKVNVQRFKGLGEMNPPQLRE-TTMD 582

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              +           E   +  +   +           
Sbjct: 583 PNTRRLVQLTVDEHSETMELMDMLLSKKRSPDRKIWLQ 620



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 71/547 (12%), Positives = 147/547 (26%), Gaps = 78/547 (14%)

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y  +       I   +  +    +      ++     ++    ++         RE  T
Sbjct: 104 SYQFSGGLHGVGISVVNALSTRVDVSVRRDSKVYEMAFENGDKVEE--------LRETGT 155

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
                     +F         S      +   +                 I  K      
Sbjct: 156 VGKRNTGTSVKFWPDASYFDTSKFSVRHLTHLLKAKAVLCPGLTIKFHDKIEDKKYQWCY 215

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
                   +D  +    L      G      E     +  +L EG  + G +        
Sbjct: 216 EDGLTDYLKDSVKDYVSLPEDPFVGSFTSQLEA-ADWAVTWLPEGGESIGESYVNLIPTI 274

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG-QDSFDINKLRYHKIIIMTDA 506
                + G    +  +         E       L  G+        +K  Y   I M D 
Sbjct: 275 AGGTHVNGMRQGLLESMR-------EFCEFRHLLPRGVKLTPDDIWDKCSYILSIKMQDP 327

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
              G            RQ  + +              + +     ++ +     + L + 
Sbjct: 328 QFAGQ----TKERLSSRQCAAFVSG------------VVKDAFSLWLNEHTDKAELLADF 371

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
            ++   +    SK V+ K   +         D   +D      + F+ +   +G    ++
Sbjct: 372 CINNAQKRMRASKKVVRKKITQGPALPGKLTDCGSQDLAR--TELFLVEGDSAGGSAKQA 429

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
                 ++       LN             +++  IL       +     ++  S     
Sbjct: 430 RDREFQAIMPLRGKILN----------TWEVDSGQILASVEVHDISVALGIDPDSDDLSE 479

Query: 687 SKYKRI--FSNRIEENY-------------------------LTILSLICNGDKIKITGP 719
            +Y +I   ++   +                                   +  K      
Sbjct: 480 LRYGKICILADADSDGLHIATLLCALFMQHFLPLVQAGHVYVAMPPLYRIDIGKEVFYAL 539

Query: 720 CSL-----LDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
                   LD I +  ++G +++QR+KGLGEMN  QL ETT++P+TR L+++ + + S+ 
Sbjct: 540 DEAEKDGILDRIEAEKKRGKVNVQRFKGLGEMNPPQLRETTMDPNTRRLVQLTVDEHSET 599

Query: 774 DDLFSRL 780
            +L   L
Sbjct: 600 MELMDML 606


>gi|33152015|ref|NP_873368.1| DNA topoisomerase IV subunit B [Haemophilus ducreyi 35000HP]
 gi|33148237|gb|AAP95757.1| DNA topoisomerase IV subunit B [Haemophilus ducreyi 35000HP]
          Length = 638

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/645 (36%), Positives = 344/645 (53%), Gaps = 20/645 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 1   MSDKRYGADQITVLKDLEPVQLRPGMY---TDTSRP-NHLAQEVIDNSVDEALSGFATQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+I+T+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHSDNSLEVIDNGRGMPVDIHSTEQISGVELILTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +K++IKR+GNIY+++F NG     L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSEQVKIKIKRDGNIYQIAFANGAKTEELHVVGSCAKKQTGTSVHFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+  D  +    + + +Y+ G+  ++S      + L
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTINFTDHIN--HNQESWYYEDGLADYLSEALAETESL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              P     + +  ++  A+ W  +G       + N IP   GGTH++GLR+ L + I  
Sbjct: 235 PNPPFIGNVTSETEAVSWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGLLKAIVE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E           +  DD       VLS+KM +P+F+ QTKE+L S +  S V++ + +
Sbjct: 295 FCEIHN-LLLKGIKLTADDVWNRCAYVLSLKMQEPQFAGQTKERLSSRQASSYVDNTLKN 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++    K I +  + ++  R    RA     RK ++   +LPGKLADC+ +D 
Sbjct: 354 AFSLWLNQNVQVGKSIAEMAIASAQSRL---RAAKKVVRKKLVSGPALPGKLADCTAQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN      D++L+SQE+  +  A+ 
Sbjct: 411 TRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  D+  +++LRY KI I+ DAD DG HI TLL   F R  P+L+  G +Y+  PPLY
Sbjct: 469 MGIDPDNDRLDELRYGKICILADADSDGLHIATLLCALFLRHFPNLVRQGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD---ALK 596
            I  GK    Y  DE   E     +    ++         G ++ + LR    D      
Sbjct: 529 RIDIGKDEVHYALDEVEKEAILARLAHKKAKPNVQRFKGLGEMNPSQLRETTMDPSTRRL 588

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           +  ++ D   +     +    I  +   +   E       K  N 
Sbjct: 589 VQLVLDDSEEDQQDDALNTFAIMDMLLAKKRSEDRKQWLQKRGNE 633



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 8/51 (15%)

Query: 722 LLDTIFSIG--------RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
            LD +            +   ++QR+KGLGEMN SQL ETT++P TR L++
Sbjct: 540 ALDEVEKEAILARLAHKKAKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQ 590


>gi|241667848|ref|ZP_04755426.1| DNA topoisomerase IV subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876390|ref|ZP_05249100.1| topoisomerase IV [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842411|gb|EET20825.1| topoisomerase IV [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 627

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/628 (35%), Positives = 342/628 (54%), Gaps = 15/628 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L GYA  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENP-NHLIQEIVDNSVDEVLAGYASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYDDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALSS L+  IKR+GN+Y+++F +G+    L +  S    +TGT++ F P+   F    
Sbjct: 118 VNALSSKLEAEIKRDGNVYQITFEDGLKTKDLEIIDSVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            N   L++ L   + L  ++ I   ++   E          G++ ++ +    +   ++ 
Sbjct: 178 VNVKALKNLLEAKAILCKALTIKYSNEIKKERISWHFET--GLKGYLDHKLEAETLPLEP 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            +    S  +  +D    W +   E++   + N IP    GTH++GL++ +   I +Y+E
Sbjct: 236 FMIDNFSNGDSYLDAVFCWCEDPLESIKNSYVNLIPTPQDGTHVTGLKNGVYEAIKTYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V S V + V D L+
Sbjct: 296 KN-SLGIKNVKITANDSFAKLNYVISVKITNPQFAGQTKEKLSNKDVTSFVTTAVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ I++ +   +         +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIIENINSIAQ--KRINADKKTTRKRIMNTSIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQE+  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEVHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI  G +YI +PPL+ I 
Sbjct: 473 --DSDDISGLRYNKICILADADSDGLHIATLLCAMFLKHFRKLIEYGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            GK+  Y  DE   E  L   +    +   +     G ++   LR    D      L   
Sbjct: 531 IGKNTFYALDENEKEKILAENTKLTGKINIMRFKGLGEMNPIQLRESAMDVSSRRLLQLT 590

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEIN 631
               +D   I   +++     +    + 
Sbjct: 591 ISNTYDDAEILDMLLAKKRAKDRRDWLE 618



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)

Query: 724 DTIFSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADDL 776
           + I +   K    I++ R+KGLGEMN  QL E+ ++  +R LL++ I     DA    ++
Sbjct: 545 EKILAENTKLTGKINIMRFKGLGEMNPIQLRESAMDVSSRRLLQLTISNTYDDA----EI 600

Query: 777 FSRLMGDE-VEPRREFIQENSLPSAL 801
              L+  +  + RR++++ +   + +
Sbjct: 601 LDMLLAKKRAKDRRDWLENHGDKAEI 626


>gi|300783223|ref|YP_003763514.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
 gi|299792737|gb|ADJ43112.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
          Length = 683

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 229/683 (33%), Positives = 348/683 (50%), Gaps = 45/683 (6%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              + Y AD +  L+GL+AV+KRP MYIG TD   G++H+  EV+DN+ DE + G+A  I
Sbjct: 2   TAETLYGADDLTHLEGLEAVRKRPGMYIGSTDS-RGINHLFSEVVDNSTDEGVAGHATKI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V D+GRGIPT  H + G+S  E+++TRLHAGGKF    YK SGGLHGVG
Sbjct: 61  VVTLHADGSVQVDDDGRGIPTGTHAKSGLSGVELVLTRLHAGGKFGGSGYKTSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL---DNP-------------LVVTGSAGND 168
            S VNALS    + +K++G +++MSF +G+    D P             L      G  
Sbjct: 121 ASAVNALSHRFDVTVKQDGKVHQMSFKHGVPGTFDAPGPKAKFTRRSGLNLTGKMKRGER 180

Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           +GT + +   +  F      + + ++ +LR  +FL   V   L         E T  +  
Sbjct: 181 SGTSIRYWYDARYFESGAALDVEGVRAKLRNTAFLVPGVTYVLRTAIEDTINEETFHFPH 240

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGS------------------RDNISIDLAMRWNDGY 269
           G+   V +L    +  +   + I G                     +  +++AMRW  GY
Sbjct: 241 GLVDMVDFLTPSGEKPVCGTLLITGEGTYKENAADAAGVMQSNVERHAEVEVAMRWGTGY 300

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK-SFGSKKDKRSVIGDDCREGFTS 328
              V CFTN I    GGTH  G   A+T+ +   + K     K  +     +D  EG T+
Sbjct: 301 ERTVECFTNTIRNVHGGTHRRGFDRAVTKALQEAISKTRGLLKPKEDMPTLEDVLEGMTA 360

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE--EHPLEAKIIVKKVLDAS 386
           V+ +++P+P+F+SQTK++L ++ +  V+++ V+  + AW E  +   EAK++++KV+DAS
Sbjct: 361 VVHVRLPEPQFTSQTKDELSTAGITRVLQAIVDKHVKAWTEDRKTKSEAKVVLQKVVDAS 420

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
            VR   ++ +D  RRK  L+ A++P KL DC      +SELFLVEGDSA GSA+  R  E
Sbjct: 421 RVRLTQKQQKDAARRKTALEGAAMPPKLVDCRTTGVARSELFLVEGDSALGSARMARVSE 480

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QA+LPLRGKILNV++A     L + EI +++  LG G G+  FD+  +RY ++I+M DA
Sbjct: 481 YQALLPLRGKILNVQKASLGDTLKNAEIASIVQVLGAGTGRT-FDLTTMRYGRVILMADA 539

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKSLQYVKDEESLEDYL 563
           DVDG+HIRTLL+T F + M  +I +G LY   PPL+ +    R     +   +  +E   
Sbjct: 540 DVDGSHIRTLLITLFAKYMRPVIEDGRLYAAMPPLHKLVTKGRNPETHFTFTQREMETKF 599

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
               L +  +               +  +                     E A  +    
Sbjct: 600 AE--LEKAGKSIVTPVPRFKGLGEMDADELWETTMNPATRSVRRITMDDAEAAEGALELL 657

Query: 624 CESDQEINVSLASKLANRLNFIA 646
                E   +     ++R++  A
Sbjct: 658 MGEKVEPRRNWLVASSDRVDREA 680



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           +++A+ +  +   + +++  +      ++      V    +               I   
Sbjct: 506 AEIASIVQVLGAGTGRTFDLTTMRYGRVILMADADVDGSHIRTLLITLFAKYMRPVIEDG 565

Query: 696 RIEENYLTILSLICNGDKIKIT-GPCSL-----LDTIFSIGRKGIS-MQRYKGLGEMNAS 748
           R+      +  L+  G   +                +   G+  ++ + R+KGLGEM+A 
Sbjct: 566 RLYAAMPPLHKLVTKGRNPETHFTFTQREMETKFAELEKAGKSIVTPVPRFKGLGEMDAD 625

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +LWETT+NP TRS+ R+ + DA  A+     LMG++VEPRR +
Sbjct: 626 ELWETTMNPATRSVRRITMDDAEAAEGALELLMGEKVEPRRNW 668


>gi|167627291|ref|YP_001677791.1| DNA topoisomerase IV subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597292|gb|ABZ87290.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 627

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/628 (35%), Positives = 342/628 (54%), Gaps = 15/628 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L GYA  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENP-NHLIQEIVDNSVDEVLAGYASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYDDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALSS L+  IKR+GN+Y+++F +G+    L +  S    +TGT++ F P+   F    
Sbjct: 118 VNALSSKLEAEIKRDGNVYQITFEDGLKTKDLEIIDSVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            N   L++ L   + L  ++ I   ++   E          G++ ++ +    +   ++ 
Sbjct: 178 VNVKALKNLLEAKAILCKALTIKYSNEIKKERISWHFET--GLKGYLDHKLEAETLPLEP 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            +    S  +  +D    W +   E++   + N IP    GTH++GL++ +   I +Y+E
Sbjct: 236 FMIDNFSNGDSYLDAVFCWCEDPLESIKNSYVNLIPTPQDGTHVTGLKNGVYEAIKTYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V S V + V D L+
Sbjct: 296 KN-SLGIKNVKITANDSFAKLNYVISVKITNPQFAGQTKEKLSNKDVTSFVTTAVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ I++ +   +         +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIIENINSIAQ--KRINADKKTTRKRIMNTSIRLPGKLTDCISSDINST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQE+  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEVHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI  G +YI +PPL+ I 
Sbjct: 473 --DSDDISGLRYNKICILADADSDGLHIATLLCAMFLKHFRKLIEYGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            GK+  Y  DE   E  L   +    +   +     G ++   LR    D      L   
Sbjct: 531 IGKNTFYALDENEKEKILAENAKLTGKINIMRFKGLGEMNPIQLRESAMDVSSRRLLQLT 590

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEIN 631
               +D   I   +++     +    + 
Sbjct: 591 ISNTYDDAEILDMLLAKKRAKDRRDWLE 618



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)

Query: 724 DTIFSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADDL 776
           + I +   K    I++ R+KGLGEMN  QL E+ ++  +R LL++ I     DA    ++
Sbjct: 545 EKILAENAKLTGKINIMRFKGLGEMNPIQLRESAMDVSSRRLLQLTISNTYDDA----EI 600

Query: 777 FSRLMGDE-VEPRREFIQENSLPSAL 801
              L+  +  + RR++++ +   + +
Sbjct: 601 LDMLLAKKRAKDRRDWLENHGDKAEI 626


>gi|54020320|ref|YP_115550.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 232]
 gi|53987493|gb|AAV27694.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 232]
          Length = 641

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 229/647 (35%), Positives = 361/647 (55%), Gaps = 15/647 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y  + +++LKGL+AV+KRP MYIG TD  +GLH +I+E+ DNAIDE++ G+A+ I++ +
Sbjct: 2   TYSVEKLKLLKGLEAVRKRPGMYIGSTDK-NGLHQLIWEIFDNAIDEAIAGFANEISLII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S  +SDNGRGIPT++HK+ G +  E++ + LH+G KF+   YK +GGLHGVG SVV
Sbjct: 61  NSDNSIEISDNGRGIPTEIHKKTGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L++ I R+  ++  SFING               TGT++ F P   +FS  +F+
Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSATTGTKIRFWPDFSLFSHSEFD 180

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
            + +  RLRE  FL ++++I+  D  +    E     + GIE+F+ +L+  ++ +    I
Sbjct: 181 SEMIISRLRETCFLINNLKINFFD--TKNNIEKKFLCERGIESFIEFLNNDQEKIHDKVI 238

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +     I ++   ++ +   EN++ F NN+    GG+H +G +S   + I +Y +++ 
Sbjct: 239 TFKEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKAINTYGQQNN 298

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
             K  K+ +   D + G ++VLS+++P+    F  QTK KL +   ++V E  +   L  
Sbjct: 299 LLKT-KQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEEVIFTNLMT 357

Query: 367 WLEEHPLEAKIIVKKVLD--ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +   +   A  I+  +L+      +         T +    +   L GKL   + +    
Sbjct: 358 FFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMN 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEG+SAGGSAK  R+RE QAILPL+GKI+N ++ R   +L ++EI  +I+ALGTG
Sbjct: 418 RELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISALGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG  +F++  L Y KIIIMTDAD DGAHI+ L+LTF F  M  LI  GF+YI +PPLY I
Sbjct: 478 IG-QNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIAQPPLYRI 536

Query: 545 -TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI--DDALKIDKLI 601
             +G+   Y+ DEE  E Y+ N   +          G ++ N L       +   ++K++
Sbjct: 537 SEKGRKDIYIWDEEKFEKYIKNS--TNLQIQRYKGLGEMNANQLWQTTMDPERRTLEKVL 594

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAE 647
            + YP  ++ F               ++ ++ SL  K    L    E
Sbjct: 595 IENYPKVEENFQILMGERADLRKSWIEKNVDFSLEDKFIENLKETYE 641



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 47/62 (75%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +QRYKGLGEMNA+QLW+TT++P+ R+L +V I +  + ++ F  LMG+  + R+ +I+
Sbjct: 562 LQIQRYKGLGEMNANQLWQTTMDPERRTLEKVLIENYPKVEENFQILMGERADLRKSWIE 621

Query: 794 EN 795
           +N
Sbjct: 622 KN 623


>gi|302557980|ref|ZP_07310322.1| DNA gyrase subunit B [Streptomyces griseoflavus Tu4000]
 gi|302475598|gb|EFL38691.1| DNA gyrase subunit B [Streptomyces griseoflavus Tu4000]
          Length = 707

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 237/683 (34%), Positives = 348/683 (50%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIDVV 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-----DNPLVV----------TGSAGNDTGTE 172
           VNALS+ L + + R G+ + +SF  G+        P                  + +GT 
Sbjct: 140 VNALSARLDVEVDRGGHTHAISFRRGVPGAFAAVGPEAKFEAGSGLRKARKIPKSRSGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V +     IF        DTL  R R+ +FL   + I + D+          E +  + G
Sbjct: 200 VRYWADRQIFLKDAKLALDTLHQRARQTAFLVPGLTIVVRDEYGLGEGGSKGEESFRFDG 259

Query: 228 GIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  +L   +              +  + +      ++         +D+AMRW  G
Sbjct: 260 GISEFCEFLASDRPVCDTLRFTGQGIFKETVPVLDEHGQMTPTEVTRELGVDVAMRWGTG 319

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   +  F N I    GGTH++G   A+ + +   +      +  +  ++ DD  EG T+
Sbjct: 320 YDTTLRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKKMLRVAEDDIVKDDALEGLTA 379

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP----LEAKIIVKKVLD 384
           V+++++ +P+F  QTKE L +S  R +V + ++  L A+L         +A+++++K + 
Sbjct: 380 VVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISKELKAFLTSTKRDAAQQARVVMEKAVA 439

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+
Sbjct: 440 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARN 499

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KII+MT
Sbjct: 500 SEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT-FDIDTARYGKIIMMT 558

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDG+HIRTLLLT F R M  ++  G ++   PPL+ I     R    +YV      E
Sbjct: 559 DADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIELVQPRKGQDKYVYTYSDRE 618

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +   + DS          +    A              + T +E A    
Sbjct: 619 LRDTLMEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINLTDLEAAEQVF 678

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                +D        S  A  L+
Sbjct: 679 DLLMGNDVAPRKEFISSSAATLD 701



 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 12/177 (6%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           ++    +  I   S +++         ++      V    +               + + 
Sbjct: 527 AECGAIIQVIGAGSGRTFDIDTARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAG 586

Query: 696 RIEENYLTILSLI----CNGDKIKIT--GPCSLLDTIFSIGRKGI----SMQRYKGLGEM 745
           R+      +  +       G    +       L DT+     K I    S+QRYKGLGEM
Sbjct: 587 RVFAAVPPLHRIELVQPRKGQDKYVYTYSDRELRDTLMEFQSKNIRYKDSIQRYKGLGEM 646

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +A QL ETT++P  R+L R+ +TD   A+ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 647 DADQLAETTMDPRHRTLRRINLTDLEAAEQVFDLLMGNDVAPRKEFISSSA--ATLD 701


>gi|332184662|gb|AEE26916.1| Topoisomerase IV subunit B [Francisella cf. novicida 3523]
          Length = 627

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 220/638 (34%), Positives = 329/638 (51%), Gaps = 16/638 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L G+A  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENP-NHLIQEIIDNSVDEVLAGFASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ KSY  SGGLHGVGVSV
Sbjct: 58  LYEDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKSYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L+  IKR+GN+Y + F +G   + L +  +    +TGT++ F P+   F    
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTSDLEIIDNVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLDRHKKPLMQ 245
            N+  L++ L   + L  ++ I   ++   E           G        +        
Sbjct: 178 VNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWHFETGLKGYLDHKLEAETLPAEPFM 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G     ++       D        + N IP    GTH++GL++ +   I +Y+E
Sbjct: 238 IDNFSNGDSFLDAVFC--WCEDPTESIKNSYVNLIPTPQDGTHVTGLKNGVYDAIKAYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V S V + V D L+
Sbjct: 296 KN-SLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTSFVATAVRDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ IV+ +  + + +      +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIVENI--SKVAQKRINADKKTTRKRIMNTAIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQEI  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI  G +YI +PPL+ I 
Sbjct: 473 --DSDDISGLRYNKICILADADSDGLHIATLLCAMFLKHFRKLIEYGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GKS  Y  DE   +  L   S           KG+         + +   +D   +   
Sbjct: 531 IGKSTFYALDENEKDTILAKNSKLSGKINIMRFKGL--GEMNPAQLRE-SAMDVSSRRLL 587

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                   + A +  +   +   +          +R  
Sbjct: 588 QLTISDVYDDAEMLDMLLAKKRAKDRRDWLENYGDRAE 625



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           I++ R+KGLGEMN +QL E+ ++  +R LL++ I+D     ++   L+  +  + RR+++
Sbjct: 558 INIMRFKGLGEMNPAQLRESAMDVSSRRLLQLTISDVYDDAEMLDMLLAKKRAKDRRDWL 617

Query: 793 QE 794
           + 
Sbjct: 618 EN 619


>gi|326559446|gb|EGE09869.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 7169]
 gi|326565180|gb|EGE15371.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 103P14B1]
 gi|326568161|gb|EGE18243.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis BC8]
 gi|326572201|gb|EGE22197.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis BC7]
 gi|326572804|gb|EGE22789.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis CO72]
 gi|326574623|gb|EGE24559.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 101P30B1]
          Length = 629

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/643 (34%), Positives = 332/643 (51%), Gaps = 23/643 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y++  +++L+GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  I V 
Sbjct: 2   STYNSQKLEVLEGLEPVRRRPGMY---TDTMRP-NHLAQEVIDNSVDEALAGFARHIIVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V D+GRG+PTD+H E   S  E+I+TRLHAGGKF+ ++Y+VSGGLHGVG+SV
Sbjct: 58  LHKDGSLSVEDDGRGMPTDIHPEFNQSGVELILTRLHAGGKFSTENYQVSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++ + R+G ++ M+F +G     L+   SA     GT+V F      F    
Sbjct: 118 VNALSTRVEVTVWRDGLMHTMAFEHGEPVTALIADKSANKKKRGTKVQFWVDGQYFDTPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+  TL+H L+  + L + + I  I +  P     +  +  G+  +++        L + 
Sbjct: 178 FSIKTLKHNLKAKAVLAAGLHIDFISEIEP-NDSESWQFTDGVVQYLTEQLDGSDTLPKE 236

Query: 247 PIRIQ-----GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P  +      G R   +  L+    +G       + N IP   GGTH++GLR+ +   + 
Sbjct: 237 PFYVSQEPTLGERGGATFALS-WLAEGGTPITESYVNLIPTAQGGTHVNGLRTGVLEALR 295

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + +      +    + G+D  +G   +LS+K  +P+FS QTKE+L S E   +V++   
Sbjct: 296 EFCDIHNLLPRQ-IKLSGEDVWDGVNYILSLKFVEPQFSGQTKERLSSREAAPLVQTLAK 354

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL +HP  AK I +  +  +  R A  +      RK V    +LPGKL DC    
Sbjct: 355 DAFSLWLNQHPDHAKAIAELAISKATKRLATAQK---VARKKVTQGPALPGKLWDCRGGL 411

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            + SELFLVEG SAGGSAKQ R    QAILPLRGKILN      D +LSSQEI  +  A+
Sbjct: 412 KEGSELFLVEGQSAGGSAKQARDNAFQAILPLRGKILNAWEVSSDTVLSSQEIHDIAIAI 471

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G      S D+++LRY KI I+ DAD DG HI TL+   F +  P+LI  G LY+  PPL
Sbjct: 472 GVDP--ASDDLSELRYDKICILADADSDGLHIATLICALFVKHFPALIEAGHLYVAVPPL 529

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I  GK + Y  D E LE  L      +         G ++ + L+        ++   
Sbjct: 530 YRIDAGKDVYYALDNEELEQVLARLGNKKTQITRFKGLGEMNPSQLKET-----TMNPDT 584

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +               I  +   +              +  + 
Sbjct: 585 RKLIRLDLDDTASTNSIMDMLLAKKRSADRKRWLETKGDLADI 627



 Score = 90.8 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 721 SLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             L+ + + +G K   + R+KGLGEMN SQL ETT+NPDTR L+R+ + D +  + +   
Sbjct: 545 EELEQVLARLGNKKTQITRFKGLGEMNPSQLKETTMNPDTRKLIRLDLDDTASTNSIMDM 604

Query: 780 L 780
           L
Sbjct: 605 L 605


>gi|301028491|ref|ZP_07191732.1| DNA gyrase, B subunit, carboxyl terminus [Escherichia coli MS
           196-1]
 gi|299878462|gb|EFI86673.1| DNA gyrase, B subunit, carboxyl terminus [Escherichia coli MS
           196-1]
          Length = 415

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 185/412 (44%), Positives = 254/412 (61%), Gaps = 8/412 (1%)

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILN
Sbjct: 4   RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN 63

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLT
Sbjct: 64  VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLT 123

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF+RQMP ++  G +YI +PPLY + +GK  QY+KD+E+++ Y I+ +L         S 
Sbjct: 124 FFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASA 183

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASK 637
             ++   L   + +     K+I      + K  +++ +           D++      + 
Sbjct: 184 PALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNA 243

Query: 638 LANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI 692
           L + LN   +     K +   +   N  + +V+    GV   + L+   I     +    
Sbjct: 244 LVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICT 303

Query: 693 FSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWE 752
              ++         +     +  +      LD +    R+G+S+QRYKGLGEMN  QLWE
Sbjct: 304 LGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWE 363

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           TT++P++R +LRV + DA  AD LF+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 364 TTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 415


>gi|308050989|ref|YP_003914555.1| DNA topoisomerase IV subunit B [Ferrimonas balearica DSM 9799]
 gi|307633179|gb|ADN77481.1| DNA topoisomerase IV subunit B [Ferrimonas balearica DSM 9799]
          Length = 630

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 219/640 (34%), Positives = 332/640 (51%), Gaps = 15/640 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y +D+I++L GL+ V+KRP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   SNQYTSDAIEVLSGLEPVQKRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHASEIQV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+   E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHPDHSLEVIDDGRGMPVDIHPEEGVPGVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+  +YE++F +G     L VTG+ G  +TGT V F P    F  +
Sbjct: 118 VVNALSRRVEVTVRRDAQVYEIAFEHGAKVQDLTVTGTCGRRNTGTRVHFWPDPKYFDSE 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H LR  + L   ++I   DK   E  E     + G+  ++    +    L +
Sbjct: 178 KFSSSRLIHLLRAKAVLCPGLKIRFDDKIKGERHEWYF--EDGLRDYLVDAVKEWPKLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     S +N ++D A +   +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFVGSFSANNEAVDWAVLWLPEGGDSVSESYVNLIPTAQGGTHVNGFRQGLLEAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +  + +LS KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EFRNLLPRG-IKLGPEDIWDKASYILSTKMQDPQFAGQTKERLSSRQSSAFVSGVVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL EH  +A+++ +  ++ +  R           RK V    +LPGKL DCS +D  +
Sbjct: 355 SLWLNEHTDQAELLAELCINNAQSRLRKA---KKVARKKVTSGPALPGKLTDCSGQDASR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDAAQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              DS DI+ LRY KI I+ DAD DG HI TLL   F +   +L+  G +Y+  PPL+ +
Sbjct: 472 P--DSDDISGLRYGKICILADADSDGLHIATLLCALFMQHFRTLVERGHVYVAMPPLFRV 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   +  L       +      ++           + +   +D   +  
Sbjct: 530 DVGKEVFYALDEGEKQGILDRIKAENKRGKVQVTRFKGLGEMNPVQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                        +  +   +           +  +  + 
Sbjct: 589 VQLTVDDAEATMALMDMLLAKKRSGDRKEWLERNGDLADL 628



 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 16/110 (14%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +  G+K  I      LD I +  ++G + + R+KGLGEMN  QL ETT++P
Sbjct: 530 DVGKEVFYALDEGEKQGI------LDRIKAENKRGKVQVTRFKGLGEMNPVQLRETTMDP 583

Query: 758 DTRSLLRVKITDASQADDLFSRLM-----GDEVEPRREFIQENSLPSALD 802
           +TR L+++ + DA     L   L+     GD    R+E+++ N   + LD
Sbjct: 584 NTRRLVQLTVDDAEATMALMDMLLAKKRSGD----RKEWLERNGDLADLD 629


>gi|315286766|ref|ZP_07872180.1| DNA gyrase subunit B [Listeria ivanovii FSL F6-596]
 gi|313630895|gb|EFR98587.1| DNA gyrase subunit B [Listeria ivanovii FSL F6-596]
          Length = 481

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 232/483 (48%), Positives = 327/483 (67%), Gaps = 9/483 (1%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVHESASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L++ + REG  Y   F  G +   +   G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IF+    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S+ +   ++ L+ ++ E+P  AK IV+K + AS  R AA+RAR++ R+   L+I+SLPGK
Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P+ SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++L+++E
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478

Query: 474 IGT 476
           I T
Sbjct: 479 IRT 481


>gi|310781199|gb|ADP24075.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 240/454 (52%), Positives = 319/454 (70%), Gaps = 3/454 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L
Sbjct: 61  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 121 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NN
Sbjct: 179 -EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 238 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 298 EGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILN
Sbjct: 358 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           VE+AR DK+LS++EI  +ITALGTG+G D     
Sbjct: 418 VEKARLDKILSNEEIRAMITALGTGVGDDFDISK 451


>gi|254373469|ref|ZP_04988957.1| topoisomerase IV [Francisella tularensis subsp. novicida GA99-3549]
 gi|151571195|gb|EDN36849.1| topoisomerase IV [Francisella novicida GA99-3549]
          Length = 627

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 219/636 (34%), Positives = 329/636 (51%), Gaps = 16/636 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L G+A  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENP-NHLIQEIIDNSVDEVLAGFASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYEDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L+  IKR+GN+Y + F +G     L +  +    +TGT++ F P+   F    
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLDRHKKPLMQ 245
            N+  L++ L   + L  ++ I   ++   E           G        +        
Sbjct: 178 VNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWHFETGLKGYLDHKLEAETLPAEPFM 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G     ++       D        + N IP    GTH++GL++ +   I +Y+E
Sbjct: 238 IDNFSNGDSYLDAVFC--WCEDPTESIKNSYVNLIPTPQDGTHVTGLKNGIYDAIKAYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V + V + V D L+
Sbjct: 296 KN-SLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATAVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ IV+ +  + + +      +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIVENI--SKVAQKRINADKKTTRKRIMNTTIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQEI  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI NG +YI +PPL+ I 
Sbjct: 473 --DSDDISALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GKS  Y  DE   +  L   S           KG+         + +   +D   +   
Sbjct: 531 IGKSTFYALDENERDAILAKNSKLPGKVNIMRFKGL--GEMNPAQLRE-SAMDVSSRRLL 587

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                   + A +  +   +   +          +R
Sbjct: 588 QLTISDVYDDAEMLDMLLAKKRAKDRRDWLENYGDR 623



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           +++ R+KGLGEMN +QL E+ ++  +R LL++ I+D     ++   L+  +  + RR+++
Sbjct: 558 VNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLTISDVYDDAEMLDMLLAKKRAKDRRDWL 617

Query: 793 QE 794
           + 
Sbjct: 618 EN 619


>gi|310781287|gb|ADP24119.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781289|gb|ADP24120.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 239/450 (53%), Positives = 322/450 (71%), Gaps = 3/450 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L
Sbjct: 61  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 121 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L + PI ++   ++  +++ M++ND Y+EN+  F NN
Sbjct: 179 -EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNNDYEVEVCMQYNDSYNENIFSFANN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 238 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 298 EGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILN
Sbjct: 358 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VE+AR DK+LS++EI  +ITALGTG+G D 
Sbjct: 418 VEKARLDKILSNEEIRAMITALGTGVGDDF 447


>gi|118498118|ref|YP_899168.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           novicida U112]
 gi|194323345|ref|ZP_03057129.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|208779469|ref|ZP_03246814.1| DNA topoisomerase IV, B subunit [Francisella novicida FTG]
 gi|118424024|gb|ABK90414.1| topoisomerase IV, subunit B [Francisella novicida U112]
 gi|194322709|gb|EDX20189.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|208744430|gb|EDZ90729.1| DNA topoisomerase IV, B subunit [Francisella novicida FTG]
          Length = 627

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/636 (34%), Positives = 341/636 (53%), Gaps = 16/636 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L G+A  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENP-NHLIQEIIDNSVDEVLAGFASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYEDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L+  IKR+GN+Y + F +G     L +  +    +TGT++ F P+   F    
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            N+  L++ L   + L  ++ I   ++   E          G++ ++ +    +    + 
Sbjct: 178 VNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWHFET--GLKGYLDHKLEAETLPAEP 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            +    S  +  +D    W +   E++   + N IP    GTH++GL++ +   I +Y+E
Sbjct: 236 FMIDNFSNGDSYLDAVFCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYDAIKAYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V + V + V D L+
Sbjct: 296 KN-SLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATTVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ IV+ +  + + +      +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIVENI--SKVAQKRINADKKTTRKRIMNTTIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQEI  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI NG +YI +PPL+ I 
Sbjct: 473 --DSDDISALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GKS  Y  DE   +  L   S           KG+         + +   +D   +   
Sbjct: 531 IGKSTFYALDENERDAILAKNSKLPGKVNIMRFKGL--GEMNPAQLRE-SAMDVSSRRLL 587

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                   + A +  +   +   +          +R
Sbjct: 588 QLTISDVYDDAEMLDMLLAKKRAKDRRDWLENYGDR 623



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           +++ R+KGLGEMN +QL E+ ++  +R LL++ I+D     ++   L+  +  + RR+++
Sbjct: 558 VNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLTISDVYDDAEMLDMLLAKKRAKDRRDWL 617

Query: 793 QE 794
           + 
Sbjct: 618 EN 619


>gi|254374930|ref|ZP_04990411.1| hypothetical protein FTDG_01110 [Francisella novicida GA99-3548]
 gi|151572649|gb|EDN38303.1| hypothetical protein FTDG_01110 [Francisella novicida GA99-3548]
          Length = 627

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/636 (34%), Positives = 341/636 (53%), Gaps = 16/636 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L G+A  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENP-NHLIQEIIDNSVDEVLAGFASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYEDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L+  IKR+GN+Y + F +G     L +  +    +TGT++ F P+   F    
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            N+  L++ L   + L  ++ I   ++   E          G++ ++ +    +    + 
Sbjct: 178 VNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWHFET--GLKGYLDHKLEAETLPAEP 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            +    S  +  +D    W +   E++   + N IP    GTH++GL++ +   I +Y+E
Sbjct: 236 FMIDNFSNGDSYLDAVFCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYDAIKAYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V + V + V D L+
Sbjct: 296 KN-SLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATAVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ IV+ +  + + +      +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIVENI--SKVAQKRINADKKTTRKRIMNTTIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQEI  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI NG +YI +PPL+ I 
Sbjct: 473 --DSDDISALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GKS  Y  DE   +  L   S           KG+         + +   +D   +   
Sbjct: 531 IGKSTFYALDENERDAILAKNSKLPGKVNIMRFKGL--GEMNPAQLRE-SAMDVSSRRLL 587

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                   + A +  +   +   +          +R
Sbjct: 588 QLTISDVYDDAEMLDMLLAKKRAKDRRDWLENYGDR 623



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           +++ R+KGLGEMN +QL E+ ++  +R LL++ I+D     ++   L+  +  + RR+++
Sbjct: 558 VNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLTISDVYDDAEMLDMLLAKKRAKDRRDWL 617

Query: 793 QE 794
           + 
Sbjct: 618 EN 619


>gi|262373790|ref|ZP_06067068.1| DNA topoisomerase IV, B subunit [Acinetobacter junii SH205]
 gi|262311543|gb|EEY92629.1| DNA topoisomerase IV, B subunit [Acinetobacter junii SH205]
          Length = 627

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/641 (34%), Positives = 347/641 (54%), Gaps = 24/641 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A S+++L GLD V++RP MY   TD     +H+  EV+DNA+DE+L G+AD I VT
Sbjct: 2   TQYTAQSLEVLSGLDPVRRRPGMY---TDTSRP-NHLAQEVIDNAVDEALAGHADQICVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  DGS +V DNGRG+P D+H E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 58  VYEDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           VNALS+ +++ ++R+GN+Y+M+F  G    PL V     A   TGT V F P +  F   
Sbjct: 118 VNALSTRVEVAVQRQGNLYQMAFEQGEPVAPLSVLEGKVAKRATGTTVRFWPEAKYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    L+H L+  + L + ++I   DK + E  E     + G+  ++      ++ L  
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYDDKINNEKIEWQF--ENGLVDYLMDELEDREILPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 G  +  + + A+ WN +G  +    + N IP   GGTH++GLRS +T  +  + 
Sbjct: 236 PAFVSSGQAERAACEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGVTEALREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E  ++V +   D  
Sbjct: 296 ELRNLLPRN-MKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASNIVLNIAKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + WL +H   A  + +     +      + A+    RK ++   +LPGKLADC     + 
Sbjct: 355 ALWLNQHAEIATQLAEMA--IAKAGRRLKAAKK-VERKKIVAGPALPGKLADCVGLTRED 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELF+VEGDSAGGSAKQ R +  QAI+P+RGKILN      D++L+SQE+  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D  D+++LRY KI I+ DAD DG HI TLL   F +  P+L+ +G L++  PPLY I
Sbjct: 472 PGSD--DLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEDGHLFVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  D++ LE  L          +  +    I++      ++ +   +  +   
Sbjct: 530 DIGKDVHYALDDDELEAILKK--------VKGNKNPQITRFKGLGEMNASQLRETTMDPN 581

Query: 605 YPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                     +  + +G+ +    ++        L  + N 
Sbjct: 582 TRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKHWLEQKGNL 622



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 723 LDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           L+ I    +  K   + R+KGLGEMNASQL ETT++P+TR L+++ + DA
Sbjct: 544 LEAILKKVKGNKNPQITRFKGLGEMNASQLRETTMDPNTRRLVQLDLDDA 593


>gi|160331171|ref|XP_001712293.1| gyrB [Hemiselmis andersenii]
 gi|159765740|gb|ABW97968.1| gyrB [Hemiselmis andersenii]
          Length = 688

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 265/648 (40%), Positives = 374/648 (57%), Gaps = 10/648 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++YDA  I +L+GL+ V++RP ++IG T G  GLHH+ YE++DN++DE+L G+ D I ++
Sbjct: 45  TNYDATKITVLEGLEPVRRRPGVFIGST-GTKGLHHLAYEIIDNSVDEALGGFCDDILIS 103

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           LN + + T+ D GRGIP D H   G +A E +MT LHAGGKF    YKVSGGLHGVGVSV
Sbjct: 104 LNDNSTLTIKDKGRGIPIDTHPVTGKTALETVMTILHAGGKFGGGGYKVSGGLHGVGVSV 163

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLPSSDIFSV 184
           VNALS +L +  +R      M F+ G     +       +  N  GT V F P   IFS 
Sbjct: 164 VNALSEFLHINTRRLEKGCSMRFVRGKTIGEIKAKKRNFNFKNKNGTSVNFKPDFQIFSS 223

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              ++   L  RL EL+FLNS++++ L D+R     E    + GGI  ++  L + K PL
Sbjct: 224 TFIYDPFILGGRLNELAFLNSNLKLILQDRRKKNINESIFVHNGGISEYIFSLSKKKTPL 283

Query: 244 MQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
               I I+     IS+ +A++W  D   EN+L F NNI   +GGTHL  L+  +TR +  
Sbjct: 284 H-KTISIEKELKGISVQVALQWTTDHSQENILSFANNIRTIEGGTHLDSLKIVITRTLNF 342

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           +  K+   K + R++ G+  REG T ++S+K+P+P F  QTK KL + +VRS+V++ V+D
Sbjct: 343 FGRKTGKFKDNFRNLSGEFIREGLTGIISVKIPEPEFEGQTKSKLGNPDVRSIVDTIVSD 402

Query: 363 GLSAWLE-EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
            L  + E +       I++K ++A    +AA++AR+L RRK VL+  +LPGKLADCS +D
Sbjct: 403 YLKNFFETQGKDACLSILEKAIEAYQASEAAKKARELVRRKSVLEFTTLPGKLADCSLKD 462

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P KSE+F+VEGDSAGGSAKQ R R  QAILPLRGKI+N+E+    ++  + EI  LI+AL
Sbjct: 463 PNKSEIFIVEGDSAGGSAKQARDRMFQAILPLRGKIINIEKTDETRIYKNTEIQALISAL 522

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G  +++FDIN+LRY +IIIMTDADVDGAHIRTLLLTFF+R    LI  G +YI  PPL
Sbjct: 523 GLGTKKENFDINRLRYRRIIIMTDADVDGAHIRTLLLTFFYRYQKKLIEKGLVYIACPPL 582

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I                D  +  SLS+ I+     +       +   +          
Sbjct: 583 YKIEETGKNLQNFKNYCYSDAELEFSLSKHIKKLNVQRFKGLGEMMPEQL--WETTMDPE 640

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
           K      + + IE+A                      A+++N      
Sbjct: 641 KRVLKRVEVSDIEKANKIFNVLMGDKVFARKEFIQIHADKMNLENIDY 688



 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 52/70 (74%)

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           K +++QR+KGLGEM   QLWETT++P+ R L RV+++D  +A+ +F+ LMGD+V  R+EF
Sbjct: 614 KKLNVQRFKGLGEMMPEQLWETTMDPEKRVLKRVEVSDIEKANKIFNVLMGDKVFARKEF 673

Query: 792 IQENSLPSAL 801
           IQ ++    L
Sbjct: 674 IQIHADKMNL 683


>gi|167035957|ref|YP_001671188.1| DNA topoisomerase IV subunit B [Pseudomonas putida GB-1]
 gi|166862445|gb|ABZ00853.1| DNA topoisomerase IV, B subunit [Pseudomonas putida GB-1]
          Length = 634

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 228/573 (39%), Positives = 329/573 (57%), Gaps = 15/573 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   S+Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASAYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN Y+M+F +G   + L V GS    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + ++  DK S E   +   Y+ G+ +++      
Sbjct: 176 KYFDSAKFSISRLKHVLKAKAVLCPGLLVTFEDKASGEK--VEWHYEDGLRSYLVDSVSE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 234 FLRLPDEPFCGSLAGNKEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGLLD 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  E  + VLS+KM +P+FS QTKE+L S E  + V  
Sbjct: 294 AMREFCEFRNLLPRG-VKLAPEDIWERISFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL  HP     + +  +  +       +A     RK +    +LPGKLADC+
Sbjct: 353 VVKDAFSLWLNAHPELGMQLAELAISNA---GRRLKASKKVERKRITQGPALPGKLADCA 409

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  + 
Sbjct: 410 GQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIA 469

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+ +LRY KI I+ DAD DG HI TLL   F +   +L+  G +Y+  
Sbjct: 470 VAIGVDPGAT--DLAQLRYGKICILADADSDGLHIATLLCALFVQHFRALVEAGHVYVAM 527

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           PPLY I  GK + Y  DE   +  L      ++
Sbjct: 528 PPLYRIDLGKEIYYALDEAERDGILDRLVAEKK 560



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     +L  +L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKL 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLET 625


>gi|148549993|ref|YP_001270095.1| DNA topoisomerase IV subunit B [Pseudomonas putida F1]
 gi|148514051|gb|ABQ80911.1| DNA topoisomerase IV subunit B [Pseudomonas putida F1]
          Length = 634

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 231/573 (40%), Positives = 330/573 (57%), Gaps = 15/573 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   S+Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASAYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN Y+M+F +G   + L V GS    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK S E   +   Y+ G+ +++      
Sbjct: 176 KYFDSPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEK--VEWHYEDGLRSYLVDSVNE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L  
Sbjct: 234 FQRLPDEPFCGSLAGNKEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGLLD 293

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  +D  E  T VLS+KM DP+FS QTKE+L S E  + V  
Sbjct: 294 AMREFCEFRSLLPRG-VKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSG 352

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL  HP     + +  +  +       +A     RK +    +LPGKLADC+
Sbjct: 353 VVKDAFSLWLNAHPELGMQLAELAISNA---GRRLKASKKVERKRITQGPALPGKLADCA 409

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  + 
Sbjct: 410 GQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIA 469

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+G   G    D+ +LRY KI I+ DAD DG HI TLL   F +   +L+  G +Y+  
Sbjct: 470 VAIGVDPGAT--DLAQLRYGKICILADADSDGLHIATLLCALFVQHFRALVEAGHVYVAM 527

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           PPLY I  GK + Y  DE   +  L      ++
Sbjct: 528 PPLYRIDLGKEIYYALDEAERDGILDRLVAEKK 560



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     +L  +L
Sbjct: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKL 610

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 611 LAKKRAGD----RKSWLET 625


>gi|114564488|ref|YP_752002.1| DNA topoisomerase IV subunit B [Shewanella frigidimarina NCIMB 400]
 gi|114335781|gb|ABI73163.1| DNA topoisomerase IV subunit B [Shewanella frigidimarina NCIMB 400]
          Length = 628

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 225/632 (35%), Positives = 332/632 (52%), Gaps = 15/632 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y +D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   SNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHTDNSLEVTDDGRGMPVDIHAEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +++ ++R+  IY+M+F NG     LVVTG+ G  +TGT V F P    F   
Sbjct: 118 VVNALSTRVEISVRRDAQIYQMAFENGFKVEELVVTGTCGRRNTGTRVHFWPDVSYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + LR  + L   ++I   +K++ +  E     + G+  ++    +    L +
Sbjct: 178 NFSVSKLIYILRAKAVLCPGLRIKFTNKQNGDVHEWFY--ESGLTDYLKEAIKDSVLLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P          + + A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFVGSFKGKLEAAEWAITWLPEGGESLSESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +    +LSIKM DP+F+ QTKEKL S +  + V     D  
Sbjct: 296 EFRN-LVPRGIKLSPEDIWDRAAFILSIKMQDPQFAGQTKEKLSSRQSSAFVSGIARDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +   A+ + +  +  +       +A     RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNSNTELAEQLAELCIGNA---LRRLKAAKKVARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSGQVLASQEVHNISIAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              DS DI++LRY KI I+ DAD DG HI TLL   F +    L++NG +YI  PPL+ I
Sbjct: 472 P--DSDDISELRYGKICILADADSDGLHIATLLCALFLKHYRVLVNNGHVYIAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE      L   +   +      ++           + +   +D   +  
Sbjct: 530 DIGKEVFYALDEAEKVGILDRITAENKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                    E   +  +   +       S   
Sbjct: 589 VQLTIDDADETVALMDMLLAKKRAPDRKSWLE 620



 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I DA +   L   L
Sbjct: 547 ILDRITAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDADETVALMDML 606

Query: 781 MGDEVEP-RREFIQE 794
           +  +  P R+ +++ 
Sbjct: 607 LAKKRAPDRKSWLET 621


>gi|330828212|ref|YP_004391164.1| DNA topoisomerase IV subunit B [Aeromonas veronii B565]
 gi|328803348|gb|AEB48547.1| DNA topoisomerase IV, B subunit [Aeromonas veronii B565]
          Length = 636

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/642 (33%), Positives = 324/642 (50%), Gaps = 19/642 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   STQYNADAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARNLEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHEDQSLEVIDDGRGMPVDIHPEEGVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y+++F  G     L +TG+ G  +TGT V F P +  F   
Sbjct: 118 VVNALSDRVEVTVRRDGQVYDIAFERGEKVQELTITGTCGRRNTGTRVRFWPQASYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H L+  + L   + I  +DK +    E             +       P   
Sbjct: 178 KFSVTKLEHLLKAKAVLCPGLTIKFLDKNTGIKLEWCYEDGLKDYLVDAVKQFTCLPEQP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +  +   L      G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGSFSSEQSAVDWALCWLPEGGECLA-ESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    +LSIKM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 FRNLLPRG-VKLTPEDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSSAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L  +   A+ I +  + ++       RA     RK +    +LPGKL DC+  DP + 
Sbjct: 356 LYLNSNTELAEQIAEICISSAQ---RRMRAAKTVVRKKITQGPALPGKLTDCNCADPMQG 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 413 ELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEAGQVLASQEVHDISVAIGLDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             +  D++ LRY K+ I+ DAD DG HI TLL   F +   +L+  G +Y+  PPLY I 
Sbjct: 473 DSE--DLSGLRYGKVCILADADSDGLHIATLLCALFVKHFRTLVEKGHVYVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLE----DYLINQSLSEEIELFCDSKGVISKNDLRNFIDD---ALKID 598
            GK + Y  DE+            +   + +       G ++   LR    D      + 
Sbjct: 531 IGKEVYYALDEDEKNGVLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDPNTRRLVQ 590

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
             ++    +      E   +  +   +           +  N
Sbjct: 591 LTMEPAGESEGDAADETLQLMDMLLAKKRASDRREWLEEKGN 632



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 10/83 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA-----SQADD 775
           +L  + +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ +  A       AD+
Sbjct: 547 VLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDPNTRRLVQLTMEPAGESEGDAADE 606

Query: 776 ---LFSRLMGDE-VEPRREFIQE 794
              L   L+  +    RRE+++E
Sbjct: 607 TLQLMDMLLAKKRASDRREWLEE 629


>gi|325989383|ref|YP_004249082.1| DNA gyrase subunit B [Mycoplasma suis KI3806]
 gi|323574468|emb|CBZ40118.1| DNA gyrase subunit B [Mycoplasma suis]
          Length = 655

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 208/598 (34%), Positives = 330/598 (55%), Gaps = 17/598 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   N  Y   SIQ+L+GL+A++ RP MYIG   G  GLHH+I+E LDNA+DE+  GYA 
Sbjct: 10  NPTPNVEYGDSSIQVLEGLEAIRVRPGMYIGSL-GVEGLHHLIWEALDNAVDEATAGYAT 68

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +TL  +   +V DNGRGIP  ++ + G+S    I T LHAGGKFN  SYK SGGLHG
Sbjct: 69  EIKLTLEEEHIVSVEDNGRGIPIGINPQTGLSNIVTIFTHLHAGGKFNNSSYKTSGGLHG 128

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSF-INGILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           VG+  VNALS++L++ + REG      F   G L++   V   + G+ TGT++ + P   
Sbjct: 129 VGIKCVNALSTFLEVNVCREGKEVFTKFTEGGKLESQPSVISESVGSKTGTKIRWQPDFS 188

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +    D++   ++ RL+ LS+LN ++     +K + E          G+  +V  +++  
Sbjct: 189 VLERNDYDIGLIKERLQNLSYLNKNLSFIFENKNTGEV--EQFLSSQGLADWVESINQGF 246

Query: 241 KPLMQSPIRIQGSRDNIS--------IDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSG 291
           + +      +   +             +++ +++ +  H  +  F NNI    GG HL  
Sbjct: 247 ETVHPIQNIVIEEQQVKKKEAVNSLRCEVSFQYSLERDHPVIYSFCNNIKTSLGGVHLET 306

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           ++  +   +  Y E       DK   I +D   G + V+S+   DP +  QTKE L+S+E
Sbjct: 307 VKEGILSCVRQYAEDWKIID-DKYKWIKEDVISGISLVVSVYYTDPSYKGQTKETLISNE 365

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +R ++   +   L    +++   AK+I+  +      R    +  +++++    ++    
Sbjct: 366 IRPILREQIEGKLHTSFQDNIEVAKLILGHIQQEYRKRINREQMLEMSKKIHKENLLGFA 425

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
            KLADC+ ++P+ SEL++VEGDSAGGSAK  R+RE QAILP++GK+ N    + +K+  +
Sbjct: 426 EKLADCTIKNPEFSELYIVEGDSAGGSAKGARNREFQAILPIKGKLAN-ASKKKNKIFDN 484

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +E+  LITA+G   G  +FDI+KLRY+KII+MTDADVDG+HI+ L++ FF++ M  L+ N
Sbjct: 485 EEVKNLITAIGCSYG-HNFDISKLRYNKIILMTDADVDGSHIQVLIMNFFYKYMKPLLEN 543

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           G +YI + PLY  +  K   Y+ DEE   ++  N   S          G +S   L  
Sbjct: 544 GHVYIARSPLYKASSKKETIYLLDEEEKREFEKNNKSSSYEFSRFKGLGEMSPAQLWE 601



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           R+KGLGEM+ +QLWETT++P  R+ L+V+I D  +      +LMG +V+PR+ FI EN  
Sbjct: 587 RFKGLGEMSPAQLWETTMDPKRRTFLQVQIIDDPKTQATMEKLMGAKVKPRKIFITENYS 646

Query: 798 PSALD 802
            + +D
Sbjct: 647 KAMID 651


>gi|67809845|gb|AAY81979.1| DNA gyrase beta subunit [Wolbachia pipientis]
          Length = 423

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 234/423 (55%), Positives = 301/423 (71%), Gaps = 7/423 (1%)

Query: 23  AVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRG 82
           AV+KRP MYIGDTD  SGLHHM+YEV+DNAIDESL GY D I V++N DGS +V+DNGRG
Sbjct: 1   AVRKRPGMYIGDTDDGSGLHHMVYEVIDNAIDESLAGYCDKIEVSINKDGSVSVTDNGRG 60

Query: 83  IPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
           IPTD+H+EEGISAAEVIMT+LHAGGKF+  +YKVSGGLHGVG+SVVNALSSWL+L I R 
Sbjct: 61  IPTDIHEEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGISVVNALSSWLELTIWRN 120

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
              + M F +G    PL V     N  GT+VTF+PS++ F+  +F+Y TL+ R+REL+FL
Sbjct: 121 KKEHFMRFEDGESIEPLKVVNENTNKRGTKVTFMPSTETFNGINFSYSTLESRIRELAFL 180

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEA-----FVSYLDRHKKPLMQSPIRIQG--SRD 255
           NS++ I+L D R+    E         +               K  +     ++G     
Sbjct: 181 NSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNKTHVTKIASMKGDAEDL 240

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
            IS++++M WND Y+EN+LCFTNNI Q+DGGTHL+G RSALTR I +Y       KK K 
Sbjct: 241 GISLEISMEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSALTRCINTYATNEGFLKKAKV 300

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VVES V+D LS  LE  P  A
Sbjct: 301 NLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESIVSDKLSTILETDPKLA 360

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
             IV++ + ++  R+AAR+AR+L + K  +DIA+LPGKLADC E+ P+ SELF+VEG+SA
Sbjct: 361 ASIVERAIRSAKGREAARKARELVKSKNNIDIATLPGKLADCQEKAPELSELFIVEGNSA 420

Query: 436 GGS 438
           GG+
Sbjct: 421 GGT 423


>gi|325972890|ref|YP_004249954.1| DNA gyrase subunit B [Mycoplasma suis str. Illinois]
 gi|323651492|gb|ADX97574.1| DNA gyrase, subunit B [Mycoplasma suis str. Illinois]
          Length = 655

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 208/598 (34%), Positives = 325/598 (54%), Gaps = 17/598 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   N  Y   SIQ+L+GL+A++ RP MYIG   G  GLHH+I+E LDNA+DE+  GYA 
Sbjct: 10  NPTPNVEYGDSSIQVLEGLEAIRVRPGMYIGSL-GVEGLHHLIWEALDNAVDEATAGYAT 68

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +TL  +   +V DNGRGIP  ++ + G+S    I T LHAGGKFN  SYK SGGLHG
Sbjct: 69  EIKLTLEEEHIVSVEDNGRGIPIGINPQTGLSNIVTIFTHLHAGGKFNNSSYKTSGGLHG 128

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSF-INGILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           VG+  VNALS++L++ + REG      F   G L++   V   + G+ TGT++ + P   
Sbjct: 129 VGIKCVNALSTFLEVNVCREGKEVFTKFTEGGKLESQPSVISESVGSKTGTKIRWQPDFS 188

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +    D++   ++ RL+ LS+LN ++     +K + E          G+  +V  +++  
Sbjct: 189 VLERNDYDIGLIKERLQNLSYLNKNLSFIFENKNTGEV--EQFLSSQGLADWVESINQGF 246

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN---------DGYHENVLCFTNNIPQKDGGTHLSG 291
           + +      +   +     +               +  H  +  F NNI    GG HL  
Sbjct: 247 ETVHPIQNIVIEEQQVKKKETVNSLRCEVSFQYSLERDHPVIYSFCNNIKTSLGGVHLET 306

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           ++  +   +  Y E       DK   I +D   G + V+S+   DP +  QTKE L+S+E
Sbjct: 307 VKEGILSCVRQYAEDWKIID-DKYKWIKEDVISGISLVVSVYYTDPSYKGQTKETLISNE 365

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +R ++   +   L    +++   AK+I+  +      R    +  +++++    ++    
Sbjct: 366 IRPILREQIEGKLHTSFQDNIEVAKLILGHIQQEYRKRINREQMLEMSKKIHKENLLGFA 425

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
            KLADC+ ++P+ SEL++VEGDSAGGSAK  R+RE QAILP++GK+ N    + +K+  +
Sbjct: 426 EKLADCTIKNPEFSELYIVEGDSAGGSAKGARNREFQAILPIKGKLAN-ASKKKNKIFDN 484

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +E+  LITA+G   G  +FDI+KLRY+KII+MTDADVDG+HI+ L++ FF++ M  L+ N
Sbjct: 485 EEVKNLITAIGCSYG-HNFDISKLRYNKIILMTDADVDGSHIQVLIMNFFYKYMKPLLEN 543

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           G +YI + PLY  +  K   Y+ DEE   ++  N   S          G +S   L  
Sbjct: 544 GHVYIARSPLYKASSKKETIYLLDEEEKREFEKNNKSSSYEFSRFKGLGEMSPAQLWE 601



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           R+KGLGEM+ +QLWETT++P  R+ L+V+I D  +      +LMG +V+PR+ FI EN  
Sbjct: 587 RFKGLGEMSPAQLWETTMDPKRRTFLQVQIIDDPKTQATMEKLMGAKVKPRKIFITENYS 646

Query: 798 PSALD 802
            + +D
Sbjct: 647 KAMID 651


>gi|310781175|gb|ADP24063.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 445

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 239/447 (53%), Positives = 318/447 (71%), Gaps = 3/447 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L
Sbjct: 61  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYEKGVPKTDL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 121 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NN
Sbjct: 179 -EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 238 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 298 EGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILN
Sbjct: 358 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIG 486
           VE+AR DK+LS++EI  +ITALGTG+G
Sbjct: 418 VEKARLDKILSNEEIRAMITALGTGVG 444


>gi|332678845|gb|AEE87974.1| Topoisomerase IV subunit B [Francisella cf. novicida Fx1]
          Length = 627

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 220/636 (34%), Positives = 340/636 (53%), Gaps = 16/636 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L G+A  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENP-NHLIQEIIDNSVDEVLAGFASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYEDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L+  IKR+GN+Y + F +G     L +  +    +TGT++ F P+   F    
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            N+  L++ L   + L  ++ I   ++   E          G++ ++ +    +    + 
Sbjct: 178 VNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWHFET--GLKGYLDHKLEAETLPAEP 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            +    S  +  +D    W +   E++   + N IP    GTH++GL++ +   I +Y+E
Sbjct: 236 FMIDNFSNGDSYLDAVFCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYDAIKAYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V + V + V D L+
Sbjct: 296 KN-SLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATAVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ IV+ +  + + +      +   R++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIVENI--SKVAQKRINADKKTIRKRIMNTTIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQEI  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI NG +YI +PPL+ I 
Sbjct: 473 --DSDDISALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GKS  Y  DE   +  L   S           KG+         + +   +D   +   
Sbjct: 531 IGKSTFYALDENERDAILAKNSKLPGKVNIMRFKGL--GEMNPAQLRE-SAMDVSSRRLL 587

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                   + A +  +   +   +          +R
Sbjct: 588 QLTISDVYDDAEMLDMLLAKKRAKDRRDWLENYGDR 623



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           +++ R+KGLGEMN +QL E+ ++  +R LL++ I+D     ++   L+  +  + RR+++
Sbjct: 558 VNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLTISDVYDDAEMLDMLLAKKRAKDRRDWL 617

Query: 793 QE 794
           + 
Sbjct: 618 EN 619


>gi|332140122|ref|YP_004425860.1| DNA topoisomerase IV subunit B [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550144|gb|AEA96862.1| DNA topoisomerase IV subunit B [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 631

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/645 (34%), Positives = 333/645 (51%), Gaps = 22/645 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y++D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   SNQYNSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHASSIKV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEGIS  E+I+ +LHAGGKF+ K+Y  SGGLHGVG+S
Sbjct: 58  ILHEDQSLEVIDDGRGMPVDIHPEEGISGVELILCKLHAGGKFSNKNYAFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +++ I+R+ ++Y+++F NG     L V  +    +TGT V F P    F   
Sbjct: 118 VVNALSNRVEVTIRRDSSVYQIAFENGDKVEDLQVIDTCGKRNTGTRVHFWPDPQYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L+  ++I   +K + E +E     + G++ ++       + L  
Sbjct: 178 KFSVSRLKHNLRAKAVLSPGLRIRFDNKIAKESQEWFY--EDGLKDYLYQAVEEFETLPS 235

Query: 246 SPIRI-----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
               +          + ++   M   +G       + N IP   GGTH++GLR  L   +
Sbjct: 236 DTPFVGNFTGNTEAADWAV---MWLPEGGDLVTESYVNLIPTAQGGTHVNGLRQGLLESM 292

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      +    +  DD  +    +LS KM DP+F+ QTKE+L S +  + V   V
Sbjct: 293 REFCEFRNLMPRG-VKLSPDDIWDRCAYILSTKMQDPQFAGQTKERLSSRQASAFVSGVV 351

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL +H   A+ + +  ++ +  R    +      RK V    +LPGKL DCS +
Sbjct: 352 KDAFSLWLNQHTEIAEALAEMCINNAQRRLRQTKK---VARKKVTQGPALPGKLTDCSSQ 408

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D   SELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQEI  +  +
Sbjct: 409 DISYSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDI--S 466

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +  GI  DS D++ LRY KI I+ DAD DG HI TLL   F R   +L+  G +Y+  PP
Sbjct: 467 VALGIDPDSTDLSGLRYGKICILADADSDGLHIATLLCALFVRHFRTLVEQGHVYVAMPP 526

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           L+ I  GK + Y  DE   +  L      ++       +           + +   +D  
Sbjct: 527 LFRIDVGKEVYYALDEGEKQGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRE-TTMDPN 585

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            +       +   E   +  +   +       +      N    +
Sbjct: 586 TRRLVQLTIEDAEEMMELMDMLLAKKRSGDRKTWLESKGNMAEVV 630



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 16/102 (15%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +  G+K  I      LD I +  ++G +++QR+KGLGEMN  QL ETT++P
Sbjct: 531 DVGKEVYYALDEGEKQGI------LDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDP 584

Query: 758 DTRSLLRVKITDASQADDLFSRLM-----GDEVEPRREFIQE 794
           +TR L+++ I DA +  +L   L+     GD    R+ +++ 
Sbjct: 585 NTRRLVQLTIEDAEEMMELMDMLLAKKRSGD----RKTWLES 622


>gi|256376406|ref|YP_003100066.1| DNA gyrase subunit B domain protein [Actinosynnema mirum DSM 43827]
 gi|255920709|gb|ACU36220.1| DNA gyrase subunit B domain protein [Actinosynnema mirum DSM 43827]
          Length = 680

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 230/623 (36%), Positives = 340/623 (54%), Gaps = 46/623 (7%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y AD +  L+GL+AV+KRP MYIG TD   G++H+  EV+DN+ DE + G+A  ITVTL+
Sbjct: 7   YGADDLTHLEGLEAVRKRPGMYIGSTDS-RGVNHLFSEVIDNSTDEGVAGHATRITVTLH 65

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS  V D+GRGIPT +H + G+S  E+++TRLHAGGKF    YK SGGLHGVG S VN
Sbjct: 66  PDGSVQVDDDGRGIPTGVHAKSGLSGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 125

Query: 130 ALSSWLKLRIKREGNIYEMSFINGIL--------------DNPLVVTGSAGNDTGTEVTF 175
           ALS    + ++REG  +EMSF +G+                + L VTG     TGT   +
Sbjct: 126 ALSHRYDVVVRREGKTHEMSFAHGVPGVFDGPGPKAAFTRQSGLRVTGRT-RKTGTSTRY 184

Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
              S  F      +++ ++ +LR  +FL   V   L      +  E    Y GG+   V 
Sbjct: 185 WHDSRYFENGAALDHEAVRAKLRNTAFLVPGVTYVLRSAVDGKIAEEVFHYPGGLADMVD 244

Query: 235 YLDRHKKPLMQSPIRIQGS------------------RDNISIDLAMRWNDGYHENVLCF 276
           +L    +  +   I I G                     +  +++A+RW  GY   V CF
Sbjct: 245 FLAPSSEKAVTGTIVITGEGVYHENAADENGVMRSKVERHAEVEIALRWGTGYERTVECF 304

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYV-EKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           TN I    GGTH  G   A+ + +   +       K  +     DD  EG T+V+ +++P
Sbjct: 305 TNTIRNVHGGTHRRGFERAVLKSVQEAIGRTRGLLKPKEDPPTLDDVLEGMTAVVHVRVP 364

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE--AKIIVKKVLDASMVRDAAR 393
           +P+F+SQTK++L ++ V  VV + V+  + AW E+   +  AK++++KV+DA+ VR   +
Sbjct: 365 EPQFTSQTKDELSTAGVTRVVLALVDKHVKAWTEDRRTKAEAKVVLQKVVDAARVRLTQK 424

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           + +D  RRK  L+ A++P KL DC      +SELFLVEGDSA GSA+  R  E QA+LPL
Sbjct: 425 QQKDAARRKTALEGAAMPPKLVDCRTTGVARSELFLVEGDSALGSARMARVSEYQALLPL 484

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGKILNV++A     L + EI +++  LG G G+  FD++ +RY ++I+M DADVDG+HI
Sbjct: 485 RGKILNVQKASLADTLRNAEIASIVQVLGAGTGRT-FDLSTMRYGRVILMADADVDGSHI 543

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSE 570
           RTLL+T F + M  +I +G LY   PPL+ +    R     +   +  +E  +     + 
Sbjct: 544 RTLLITLFAKYMRPVIEDGRLYAAMPPLHKVVTKGRNAETHFTFTQREMEQKVARLERAG 603

Query: 571 EI----ELFCDSKGVISKNDLRN 589
           +            G +   +L +
Sbjct: 604 KTVVKPVPRFKGLGEMDAEELWD 626



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797
           R+KGLGEM+A +LW+TT+NP TRS+ R+ + D   A+     LMG++VEPRR ++  ++ 
Sbjct: 612 RFKGLGEMDAEELWDTTMNPATRSVRRITLADVEAAEAALELLMGEKVEPRRAWLVASAA 671

Query: 798 PS---ALDI 803
                A+D+
Sbjct: 672 RVDQSAIDV 680


>gi|4176381|dbj|BAA37153.1| topoisomerase IV subunit [Pseudomonas aeruginosa]
          Length = 629

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/644 (34%), Positives = 334/644 (51%), Gaps = 23/644 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A  + V 
Sbjct: 2   ATYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKSVQVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V D+GRG+P D+H EEG+   E+ + +LHAGGKF+ K+Y+ SGGLHGVG+SV
Sbjct: 58  LHQDNSLEVIDDGRGMPVDIHPEEGVPGVELTLIKLHAGGKFSNKNYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++R+KR+ N Y M+F +G  D+ L V G+    +TGT V F P    F    
Sbjct: 118 VNALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSAK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H L+  + L   + +   DK + E  E     + G+ ++++        L   
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDKNTGERVEWHF--EDGLRSYLTDAVAELPRLPDE 235

Query: 247 PIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           P          ++  A +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 236 PFCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   V D  S
Sbjct: 296 FRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL EH      + +  +  +       +A     RK +    +LPGKLADC+ ++P ++
Sbjct: 355 LWLNEHAEIGLQLAELAISNA---GRRLKAGKKVERKKITQGPALPGKLADCAGQEPMRA 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 412 ELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDP 471

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G    D+ +LRY KI I+ DAD DG HI TLL   F R    L+  G +Y+  PPLY I 
Sbjct: 472 GAS--DLAQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRID 529

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   +  L   +  ++       K  +++      ++     +  +    
Sbjct: 530 LGKDIYYALDEAERDGILERLAAEKKR-----GKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 606 PNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFI 645
               +  +E A     I  +   +       S      N    +
Sbjct: 585 RRLVQLTLEDATGTLEIMDMLLAKKRAGDRKSWLESKGNLAEVL 628



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + DA+   ++   L
Sbjct: 546 ILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTLEIMDML 605

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 606 LAKKRAGD----RKSWLES 620


>gi|257454361|ref|ZP_05619624.1| DNA topoisomerase IV, B subunit [Enhydrobacter aerosaccus SK60]
 gi|257448264|gb|EEV23244.1| DNA topoisomerase IV, B subunit [Enhydrobacter aerosaccus SK60]
          Length = 629

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/589 (38%), Positives = 331/589 (56%), Gaps = 20/589 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y + S+++L+GLD V++RP MY   TD     +H+  EV+DN++DE+L G+A  ITV 
Sbjct: 2   SNYTSTSLEVLEGLDPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHAKNITVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V D+GRG+PTD+H E   S  E+I+TRLHAGGKF+  +Y+VSGGLHGVG+SV
Sbjct: 58  LHTDGSLSVEDDGRGMPTDIHPEFKQSGIELILTRLHAGGKFSTDNYQVSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  + + + R G ++ M FI+G    PL V  S+     GT V F  +   F    
Sbjct: 118 VNALSHKVDVTVWRNGEVFTMQFIDGNAVAPLAVAPSSNKKKRGTLVRFWVNETYFDSPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN   L+H L+  + L++ + I+ I++   +          G+  +++     +  L + 
Sbjct: 178 FNIKQLKHHLKAKAVLSAGLTITFINEIDGDKDVWQF--TDGLSQYLTEQLVEEITLPEQ 235

Query: 247 PIRI-----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P        +G R  +S  +    ++G       + N IP   GGTH++GLR+ +T  + 
Sbjct: 236 PFVFNYDAKKGERAGLSFAIC-WLSEGGTPVQESYVNLIPTAQGGTHVNGLRTGITDALK 294

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + E      ++   +  +D  +G   +LS+K  +P+FS QTKE+L S E   VV++F  
Sbjct: 295 EFCELHNLLPRN-VKLAPEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAGVVQAFAK 353

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           DG S WL ++   AK I +  ++        + A+    RK +    +LPGKLADC    
Sbjct: 354 DGFSLWLNQNSEIAKQIAELAIN--KAGKRLKSAKK-VERKKITQGPALPGKLADCRGNL 410

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN      D +L+S+EI  +  A+
Sbjct: 411 RDGAELFLVEGDSAGGSAKQARDRHFQAIMPLRGKILNTWEVSPDTVLASEEIHNIAIAI 470

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G     DS D+++LRY KI I+ DAD DG HI TLL   F +   +++  G LY+  PPL
Sbjct: 471 GVDP--DSDDLSELRYDKICILADADSDGLHIATLLCALFVKHFKAVVDAGHLYVAMPPL 528

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           Y I  GK ++Y  D + LE  L   + +++         G +S   LR 
Sbjct: 529 YRIDIGKEVEYALDNDELEQILKKVAKNKKPQITRFKGLGEMSAEQLRE 577



 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
           I    +  +     L   +  + + K   + R+KGLGEM+A QL ETT+NPDTR L+++ 
Sbjct: 533 IGKEVEYALDN-DELEQILKKVAKNKKPQITRFKGLGEMSAEQLRETTMNPDTRRLVQLD 591

Query: 767 ITDASQADDLFSRL 780
           + D +  D +   L
Sbjct: 592 LDDPTATDSVMDML 605


>gi|115381182|gb|ABI96240.1| DNA topoisomerase IV subunit B [Spiroplasma gladiatoris]
          Length = 552

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/557 (42%), Positives = 338/557 (60%), Gaps = 14/557 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L G+ D I V +  DGS TV DNGRG+P  ++K   
Sbjct: 1   GSTD-VRGLHHLVWEIVDNSIDEALAGFCDEINVVIEKDGSITVKDNGRGVPIGMYKGTN 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  E+I + LHAGGKF    YK SGGLHGVG SVVNALSS  K+ I R+G I ++ F  
Sbjct: 60  KSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVTIYRDGIISKIGFSK 119

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G L  PL   G++   TGT V FLP   IFS   F++ T+  RL+E + LNS ++I+L 
Sbjct: 120 GGNLVTPLKNAGNSK-LTGTVVNFLPDETIFSTTKFSFSTISERLKESALLNSGLKITLK 178

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+RS +   +   Y  G+  FV+ L  ++K +  +PI I+G    I +++A+ + D + E
Sbjct: 179 DERSDK--FVEYKYDNGLIEFVNELKGNQKEMC-NPILIKGQDSEIDVEIALTYTDDFSE 235

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N++ F NN+   DGGTH+SG ++ L + +  Y  +    K  K      D +EG  +V++
Sbjct: 236 NLMGFANNVKTSDGGTHISGFKTGLLKSLNEYGREQGILKDKKLEAN--DVKEGLIAVVT 293

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+   ++  QTK KL +SE +S  E    +    WL+E+   A  I++K L A   R
Sbjct: 294 VKIPENLIQYEGQTKGKLGTSEAKSACEKITEEIFGFWLQENKAIALSIIEKALLARKAR 353

Query: 390 DAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           D AR+AR   R +K      ++ GKL     +D   +ELFLVEGDSAGGSAK GR R+ Q
Sbjct: 354 DEARKARQAIRDQKTKTRGKTMLGKLTPAQGKDKSINELFLVEGDSAGGSAKSGRDRKFQ 413

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+ +   +L ++EI ++I A+G G+G D FDI+ + Y KIIIMTDAD 
Sbjct: 414 AILPLRGKVINAEKTKILDLLKNEEITSIINAIGAGMGSD-FDISDINYGKIIIMTDADT 472

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL--QYVKDEESLEDYLINQ 566
           DGAHI+TLLLTFF+R M  LI N  +YI  PPL+ +T+       Y+  E+ L  Y+   
Sbjct: 473 DGAHIQTLLLTFFYRYMKELITNKNIYIAMPPLFKVTQSNKKDFIYLWTEDELAQYMKKT 532

Query: 567 SLSEEIELFCDSKGVIS 583
               EI+ +     + +
Sbjct: 533 KNKIEIQRYKGLGEMNA 549



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  + +++    ++ + +N I       +  S  N   ++           +    
Sbjct: 422 VINAEKTKILDLLKNEEITSIINAIGAGMGSDFDISDINYGKIIIMTDADTDGAHIQTLL 481

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-LLDTIFSIGRKGISMQRY 739
             F +    + I +  I      +  +  +  K  I       L       +  I +QRY
Sbjct: 482 LTFFYRYMKELITNKNIYIAMPPLFKVTQSNKKDFIYLWTEDELAQYMKKTKNKIEIQRY 541

Query: 740 KGLGEMNASQL 750
           KGLGEMNA QL
Sbjct: 542 KGLGEMNAIQL 552


>gi|315655462|ref|ZP_07908362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           ATCC 51333]
 gi|315490402|gb|EFU80027.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           ATCC 51333]
          Length = 703

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 227/663 (34%), Positives = 344/663 (51%), Gaps = 52/663 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M      S Y A  + +L+GL+AV+KRP+MYIG TD   GL H ++E++DN++DE+L G+
Sbjct: 1   MVTAKDVSDYSAHHLSVLEGLEAVRKRPAMYIGSTDR-RGLMHCLWEIIDNSVDEALAGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V L  D S  V DNGRG+P D     G+S  EV+ T+LHAGGKF+   YKV+GGL
Sbjct: 60  CDHIEVVLYPDHSAEVRDNGRGVPIDEVPGTGLSGVEVVYTKLHAGGKFDAGLYKVAGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLV 160
           HGVG SVVNALS+ + + + R G  + + F  G                       + L 
Sbjct: 120 HGVGASVVNALSARMDVAVDRGGVTHGLQFRRGEPGVFSDTEELNPNNAFQPFEHSSKLT 179

Query: 161 VTGSAGN-DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
             G      TGT V F     IF    DF+Y+ L +R R+ SFL   + I++ D R  E 
Sbjct: 180 KLGKVKKGTTGTRVRFWADYQIFPKEVDFSYEDLSNRARKTSFLVPGLAITVTDLRGGET 239

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------RDNIS 258
              T  +KGG   FV YL   +       ++  G+                         
Sbjct: 240 LTDTFLHKGGTVDFVDYLAPDRAITDTWQLQGSGTFTEIVQVPNQQTGHLEPKEMERTCE 299

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG---SKKDKR 315
           +D+A+RW  GY      + N I    GGTHL+G  + L + + + ++ +         + 
Sbjct: 300 VDVALRWGVGYDTVEQSYVNIIETPVGGTHLAGFEAGLVKTLRAAIQANSRRLKLGAKES 359

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND----GLSAWLEEH 371
            +  +D   G T+V+++++P+P F  QTKE L S++V+ +V   V       L++   E 
Sbjct: 360 KIEKEDILAGMTAVITVRLPEPEFEGQTKEALGSAKVKPIVTKVVAKELEAKLNSRKRED 419

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
             +   ++ K++     R +AR ++++TRRK  L+ ++LP KL DC   D +KSELF+VE
Sbjct: 420 KNQVSTLLDKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSDDVEKSELFIVE 479

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSA G+AK  R+ E QA+ P+RGKILNV++    +ML++ E   +I  LG G G+  FD
Sbjct: 480 GDSALGTAKAARNSEFQALFPIRGKILNVQKTGTAQMLANAECAAIIQVLGAGSGRT-FD 538

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           I++ RY K+I+MTDADVDGAHIRTLLLT FFR M  +I  G ++   PPL+ I      +
Sbjct: 539 ISQARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPMIAAGRVFAAVPPLHRIQVNAKGK 598

Query: 552 YVKD-EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
              +   +  +  +++ L +  +     K  I +      +D     +  +   +    +
Sbjct: 599 TPGEFRYTYSEDQLHKELGKLEQTGRTYKEPIQRYKGLGEMDADQLAETTMDPRHRTLRR 658

Query: 611 TFI 613
             +
Sbjct: 659 IRL 661



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 5/70 (7%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEPRREFI 792
           +QRYKGLGEM+A QL ETT++P  R+L R++++D +    A+++F  LMG  V PRREFI
Sbjct: 630 IQRYKGLGEMDADQLAETTMDPRHRTLRRIRLSDEAAVNRAEEVFELLMGSAVPPRREFI 689

Query: 793 QENSLPSALD 802
            E +    LD
Sbjct: 690 IEGASK--LD 697


>gi|72080376|ref|YP_287434.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 7448]
 gi|71913500|gb|AAZ53411.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 7448]
          Length = 642

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 227/648 (35%), Positives = 361/648 (55%), Gaps = 15/648 (2%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y  + +++L+GL+AV+KRP MYIG TD  +GLH +I+E+ DNAIDE++ G+A+ I++ +
Sbjct: 2   TYSVEKLKLLRGLEAVRKRPGMYIGSTDK-NGLHQLIWEIFDNAIDEAIAGFANEISLII 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N D S  +SDNGRGIPT++HK+ G +  E++ + LH+G KF+   YK +GGLHGVG SVV
Sbjct: 61  NSDNSIEISDNGRGIPTEIHKKTGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L++ I R+  ++  SFING               TGT++ F P   +FS  +F+
Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSTTTGTKIRFWPDFSLFSHSEFD 180

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
            + +  RLRE  FL ++++I+  D  +    E     + GIE+F+ +L+  ++ +    I
Sbjct: 181 SEMIISRLRETCFLVNNLKINFFD--TKNNIEKKFLCERGIESFIEFLNNDQEKIHDKII 238

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +     I ++   ++ +   EN++ F NN+    GG+H +G +S   + I +Y +++ 
Sbjct: 239 TFKEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKAINTYGQQNN 298

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
             K  K+ +   D + G ++VLS+++P+    F  QTK KL +   ++V E  +   L  
Sbjct: 299 LLKT-KQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEEVIFTNLMT 357

Query: 367 WLEEHPLEAKIIVKKVLD--ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +   +   A  I+  +L+      +         T +    +   L GKL   + +    
Sbjct: 358 FFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMN 417

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEG+SAGGSAK  R+RE QAILPL+GKI+N ++ R   +L ++EI  +I+ALGTG
Sbjct: 418 RELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISALGTG 477

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG  +F++  L Y KIIIMTDAD DGAHI+ L+LTF F  M  LI  GF+YI +PPLY I
Sbjct: 478 IG-QNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIAQPPLYRI 536

Query: 545 -TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI--DDALKIDKLI 601
             +G+   Y+ DEE  E Y+ N   +          G ++ N L       +   ++K++
Sbjct: 537 SEKGRKDIYIWDEEKFEKYIKNS--TNLQIQRYKGLGEMNANQLWQTTMDPERRTLEKVL 594

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAEK 648
            + YP  ++ F               ++ ++ SL  K    L     +
Sbjct: 595 IENYPKVEENFQILMGERADLRKSWIEKNVDFSLEDKFIENLKETIYE 642



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 47/62 (75%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
           + +QRYKGLGEMNA+QLW+TT++P+ R+L +V I +  + ++ F  LMG+  + R+ +I+
Sbjct: 562 LQIQRYKGLGEMNANQLWQTTMDPERRTLEKVLIENYPKVEENFQILMGERADLRKSWIE 621

Query: 794 EN 795
           +N
Sbjct: 622 KN 623


>gi|145297604|ref|YP_001140445.1| DNA topoisomerase IV subunit B [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850376|gb|ABO88697.1| DNA topoisomerase IV, B subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 631

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/639 (33%), Positives = 324/639 (50%), Gaps = 13/639 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   STQYNADAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARTLEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  D S  V D+GRG+P D+H EEG+S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  TLFEDQSLEVIDDGRGMPVDIHPEEGVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y+++F  G     L +TG+ G  +TGT V F P +  F   
Sbjct: 118 VVNALSDRVEVTVRRDGQVYDIAFERGDKVQELTITGTCGRRNTGTRVRFWPQASYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H L+  + L   + I  +DK +    E             +       P   
Sbjct: 178 RFSVTKLEHLLKAKAVLCPGLTIKFLDKNTGIKLEWCYEDGLKDYLVDAVKQFTCLPEQP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +  +   L      G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FVGAFSTEQSAVDWALCWLPEGGECLA-ESYVNLIPTPQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    +LSIKM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 FRNLLPRG-VKLTPEDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSSAFVSGVVKDSFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L  +   A+ I +  + ++       RA     RK +    +LPGKL DC+  DP + 
Sbjct: 356 LFLNSNTELAEQIAEICISSAQ---RRLRAAKTVVRKKITQGPALPGKLTDCNCADPMQG 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 413 ELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEAGQVLASQEVHDISVAIGLDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             +  D++ LRY K+ I+ DAD DG HI TLL   F R   +L++ G +Y+  PPLY I 
Sbjct: 473 DSE--DLSGLRYGKVCILADADSDGLHIATLLCALFVRHFRTLVNKGHVYVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE+     L      ++      ++           + +   +D   +   
Sbjct: 531 IGKEVYYALDEDEKNGVLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRE-TTMDPNTRRLV 589

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                   E      + +    ++        L  + N 
Sbjct: 590 QLTMGELEEGDETLQLMDMLLAKKRAPDRREWLEEKGNL 628



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 5/78 (6%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD---LF 777
           +L  + +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ + +  + D+   L 
Sbjct: 547 VLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDPNTRRLVQLTMGELEEGDETLQLM 606

Query: 778 SRLMGDEVEP-RREFIQE 794
             L+  +  P RRE+++E
Sbjct: 607 DMLLAKKRAPDRREWLEE 624


>gi|322513687|ref|ZP_08066782.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Actinobacillus ureae ATCC
           25976]
 gi|322120495|gb|EFX92402.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Actinobacillus ureae ATCC
           25976]
          Length = 637

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/638 (35%), Positives = 333/638 (52%), Gaps = 20/638 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +  Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I
Sbjct: 1   MSDKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGYASQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+I+T+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHADNSLEVIDNGRGMPVDIHSTEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  ++++IKR G IY ++F NG     L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSQRVEIKIKRNGEIYTIAFENGAKVEELTVIGSCPKKQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+ +D  +                  +  +    P 
Sbjct: 177 SPRFSVSRLRHLLRAKAVLCPKLTINFVDHINNNSESWYYEDGLSDYLSEALKEFECLPN 236

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                 +    + +S  L     +G       + N IP    GTH++GLR+ L + +  +
Sbjct: 237 PPFIGDVSSETEAVSWALT-WLPEGGELLAESYVNLIPTAQCGTHVNGLRNGLLKAMVEF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E           +  DD       VLS+K+ +P+F+ QTKE+L S +  S V+S + D 
Sbjct: 296 CEIHN-LLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVDSTIKDA 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++    K+I +  + ++  R    RA     RK ++   +LPGKLADC+ +D  
Sbjct: 355 FSLWLNQNMQTGKLIAEMAISSAQSRL---RAAKKVVRKKLVSGPALPGKLADCTSQDLS 411

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN      D++L+SQE+  +  A+  
Sbjct: 412 RTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDI--AVAM 469

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  D+ ++++LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY 
Sbjct: 470 GIDPDNDNLDELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMPPLYR 529

Query: 544 ITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           I  GK    Y  DE   E  L               K  + +      ++ +   +  + 
Sbjct: 530 IDIGKDEVHYALDEVEKEAIL-------ARLAKKKGKPNVQRFKGLGEMNPSQLRETTMD 582

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                  +  +++   +      + + +++ LA K A 
Sbjct: 583 PSTRRLVQLTLDELDTTEENEPNTFEIMDMLLAKKRAE 620



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 16/96 (16%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD +           +KG  ++QR+KGLGEMN SQL ETT++P TR L+++ + +    
Sbjct: 540 ALDEVEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPSTRRLVQLTLDELDTT 599

Query: 774 D-------DLFSRLMGDE-VEPRREFIQENSLPSAL 801
           +       ++   L+  +  E R++++Q     + L
Sbjct: 600 EENEPNTFEIMDMLLAKKRAEDRKQWLQNRGDEADL 635


>gi|56707333|ref|YP_169229.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669803|ref|YP_666360.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456396|ref|ZP_03664869.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370010|ref|ZP_04986017.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033]
 gi|254874168|ref|ZP_05246878.1| topoisomerase IV [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603825|emb|CAG44796.1| Topoisomerase IV, subunit B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320136|emb|CAL08179.1| Topoisomerase IV, subunit B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568255|gb|EDN33909.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033]
 gi|254840167|gb|EET18603.1| topoisomerase IV [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158458|gb|ADA77849.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 627

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/628 (35%), Positives = 343/628 (54%), Gaps = 15/628 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L G+A  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENP-NHLIQEIIDNSVDEVLAGFASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYEDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L+  IKR+GN+Y + F +G     L +  +    +TGT++ F P+   F    
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            N+  L++ L   + L  ++ I   ++   E          G++ ++ +    +    + 
Sbjct: 178 VNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWHFET--GLKGYLDHKLEAETLPAEP 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            +    S  +  +D    W +   E++   + N IP    GTH++GL++ +   I +Y+E
Sbjct: 236 FMIDNFSNGDSYLDAVFCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYDAIKAYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V + V + V D L+
Sbjct: 296 KN-SLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATAVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ IV+ +  + + +      +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIVENI--SKVAQKRINADKKTTRKRIMNTTIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQEI  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI NG +YI +PPL+ I 
Sbjct: 473 --DSDDISALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            GKS  Y  DE   +  L   S    +   +     G ++   LR    D      L   
Sbjct: 531 IGKSTFYALDENERDTILTKNSKLPGKVNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLT 590

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEIN 631
               +D T +   +++     +    + 
Sbjct: 591 ISDVYDDTEMLDMLLAKKRAKDRRDWLE 618



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           +++ R+KGLGEMN +QL E+ ++  +R LL++ I+D     ++   L+  +  + RR+++
Sbjct: 558 VNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLTISDVYDDTEMLDMLLAKKRAKDRRDWL 617

Query: 793 QE 794
           + 
Sbjct: 618 EN 619


>gi|219872242|ref|YP_002476617.1| DNA topoisomerase IV subunit B [Haemophilus parasuis SH0165]
 gi|219692446|gb|ACL33669.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis SH0165]
          Length = 633

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 230/645 (35%), Positives = 336/645 (52%), Gaps = 17/645 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y AD I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A+ I
Sbjct: 1   MSEKRYGADEITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALSGFANQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V DNGRG+P D+H  E IS  E+I+T+LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 57  DVILHSDNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ IKR G IY ++F N +    L V GS     TGT V F P+   F 
Sbjct: 117 ISVVNALSESVEITIKRNGEIYTIAFANSVKVEELKVIGSCPKRQTGTTVRFYPNPKYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L+H LR  + L   + I+  D  +      T +Y+ G+  +++   +  + L
Sbjct: 177 SPKFSVSRLRHLLRAKAVLCPKLTINFTDHINNTQ--ETWYYEDGLRDYLTDALKEYEYL 234

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                  +   +  ++  A+ W     E +   + N IP   GGTH++GLR  L + +  
Sbjct: 235 PNPLFVGEVIGETEAVSWALSWLTEGGEQINESYVNLIPTALGGTHVNGLRQGLFKAMAE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + +           +  DD       VLS+KM +P+F+ QTKE+L S +  S VE+ V D
Sbjct: 295 FCDFRN-LLPKGVKLTADDVWGRCCYVLSLKMQEPQFAGQTKERLSSRQAASYVENSVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL ++   A+ + +  + ++       RA     RK ++   +LPGKLADC  +D 
Sbjct: 354 AFSLWLNQNVQVAEQLAEMAISSAQ---NRLRAEKKVVRKKLVSGPALPGKLADCISQDL 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN      D++L+S E+  +  A+ 
Sbjct: 411 TRTELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVSPDQVLASTEVHDI--AVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P+L+ NG +Y+  PPLY
Sbjct: 469 LGIDPDNEDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPTLVKNGHVYVAMPPLY 528

Query: 543 GITRGKSL-QYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALKIDK 599
            I  GK    Y  DE   E  L   +  +           G ++ + LR    D      
Sbjct: 529 RIDIGKDEVHYALDESEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRL 588

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +      N D   +    +  +   +   E          +  + 
Sbjct: 589 VQLTLEDNSDDEEVSTFELMDMLLAKKRAEDRKQWLQDRGDEADL 633



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 18/96 (18%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
            LD             +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++ + D S  
Sbjct: 540 ALDESEKEAILARLAKKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTLEDNSDD 599

Query: 774 DDL--FSRLMGD------EVEPRREFIQENSLPSAL 801
           +++  F  LM D        E R++++Q+    + L
Sbjct: 600 EEVSTFE-LM-DMLLAKKRAEDRKQWLQDRGDEADL 633


>gi|167077361|gb|ABZ10902.1| DNA gyrase subunit B [Burkholderia vietnamiensis]
          Length = 623

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 270/627 (43%), Positives = 382/627 (60%), Gaps = 20/627 (3%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPS 178
           LSSWL+L ++R G  + M F  GI              +P++VTG    + GTEV F+  
Sbjct: 1   LSSWLRLTVRRNGKKHFMEFHRGIAQDRVLEQVDGVEVSPMLVTGDTE-NRGTEVHFMAD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++
Sbjct: 60  PTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR
Sbjct: 118 TKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE 
Sbjct: 178 VINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEE 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC 
Sbjct: 238 VVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQ 297

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+
Sbjct: 298 EKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLV 357

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP ++  G++YI +
Sbjct: 358 TALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMVERGYVYIAQ 417

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK  +Y+KD+  L  +++  +L     +   +   IS + L       L   
Sbjct: 418 PPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSKNGAAISGDALGELARSYLLSQ 477

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WH 654
            +I      +D   +E  +     +  S +E   + A  L   L+    K+E      + 
Sbjct: 478 SVIGRLSRLYDPAALEAIMDGVSIDL-SSEESTEASAKALHAALHDETLKNEVRVVPSYD 536

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                  + V+R   G     V++     +   +     +   E        +      +
Sbjct: 537 PVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTAKTFEGLIQAGAVIKRGERSM 596

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKG 741
            +T   S +  + +   + +S QRYKG
Sbjct: 597 AVTDFKSAMKWLLADAERNVSKQRYKG 623


>gi|297626463|ref|YP_003688226.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922228|emb|CBL56798.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 706

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 236/681 (34%), Positives = 355/681 (52%), Gaps = 51/681 (7%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y+A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E++DNA+DE+L G+   I V L
Sbjct: 27  EYEAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIIDNAVDEALAGFGRHIDVRL 85

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS  V+D GRGIP D+     ++  EV+ T+LHAGGKF   SY  +GGLHGVG SVV
Sbjct: 86  NADGSIHVADAGRGIPVDIEPRTHLTGVEVVFTKLHAGGKFGAGSYTATGGLHGVGASVV 145

Query: 129 NALSSWLKLRIKREGNIYEMSFINGIL---DNP-----------LVVTG-SAGNDTGTEV 173
           NALSS L + + R G+ + MSF  G     D P           L  TG +A   TGT V
Sbjct: 146 NALSSRLDVEVDRNGHTWAMSFQRGKPGVFDGPGPSAGFTPGSGLRKTGRTAKGVTGTRV 205

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           T+ P   IF      + + L  R R+ SFL   ++I++ D R  EP E T  ++GGI  F
Sbjct: 206 TYWPDRQIFLKQAQLSAEQLLDRARQTSFLVPGLRITVNDDRGEEPVETTFQHEGGISEF 265

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNIS---------------------IDLAMRWNDGYHE 271
           V +L       +   +R+QGS   +                      +D+A+RW++ +  
Sbjct: 266 VDFLSVG--EPITDVLRLQGSDHFVETVPELDENGAMTPTDVDRRLDVDVAVRWSNNFDT 323

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
               F N I    GGTH+ G    L R   + +E +   K  +  +  DD  EG T+V++
Sbjct: 324 VERSFVNIIATPKGGTHVQGFERGLVRAFAAGLEGTRLLKSGEEVIK-DDVLEGMTAVVT 382

Query: 332 IKMPDPRFSSQTKEKLVSSE----VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++P+P+F  QTKE L +      V  +VES + + L +       +A+++++K ++AS 
Sbjct: 383 VRLPEPQFEGQTKEVLGTPPVTRLVARIVESELTEFLKSTKAATRAQARLVMEKAVNASR 442

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AAR  R+  RRK  L+ +S+P KL DC   D ++SELF+VEGDSA G+A + R+ E 
Sbjct: 443 TRLAARAHRENQRRKNALESSSMPPKLKDCRNADGERSELFIVEGDSALGTALRARNSEF 502

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD+++ RY KII M DAD
Sbjct: 503 QALLPIRGKILNVQKASVGDMLKNAECASIIQVVGAGSGKT-FDVDQARYGKIIFMADAD 561

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLEDYL 563
            DGAHIR LL T FFR M  ++  G ++   PPL+       +    +Y+      E   
Sbjct: 562 SDGAHIRCLLATLFFRYMRPMVEAGRIFSAVPPLHRFELTNPKKGMEKYIYTYSDPEYQR 621

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
               L+++   F + +      ++         ++                 A       
Sbjct: 622 KAAELTKKGIHFKEPQRYKGLGEMDADQLADTTMNPR-HRLLRRITVDDAAGAADVFELL 680

Query: 624 CESDQEINVSLASKLANRLNF 644
             ++         + A +L+ 
Sbjct: 681 MGNNVAPRKEFIVEGAYQLDE 701



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 728 SIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +KGI     QRYKGLGEM+A QL +TT+NP  R L R+ + DA+ A D+F  LMG+ 
Sbjct: 625 ELTKKGIHFKEPQRYKGLGEMDADQLADTTMNPRHRLLRRITVDDAAGAADVFELLMGNN 684

Query: 785 VEPRREFIQENS 796
           V PR+EFI E +
Sbjct: 685 VAPRKEFIVEGA 696


>gi|134301370|ref|YP_001121338.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049147|gb|ABO46218.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 627

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/628 (35%), Positives = 343/628 (54%), Gaps = 15/628 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L G+A  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENP-NHLIQEIIDNSVDEVLAGFASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYEDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L+  IKR+GN+Y + F +G     L +  +    +TGT++ F P+   F    
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            N+  L++ L   + L  ++ I   ++   E          G++ ++ +    +    + 
Sbjct: 178 VNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWHFET--GLKGYLDHKIEAETLPAEP 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            +    S  +  +D    W +   E++   + N IP    GTH++GL++ +   I +Y+E
Sbjct: 236 FMIDNFSNGDSYLDAVFCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYDAIKAYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V + V + V D L+
Sbjct: 296 KN-SLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATAVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ IV+ +  + + +      +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIVENI--SKVAQKRINADKKTTRKRIMNTTIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQEI  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI NG +YI +PPL+ I 
Sbjct: 473 --DSDDISALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            GKS  Y  DE   +  L   S    +   +     G ++   LR    D      L   
Sbjct: 531 IGKSTFYALDENERDTILTKNSKLPGKVNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLT 590

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEIN 631
               +D T +   +++     +    + 
Sbjct: 591 ISDVYDDTEMLDMLLAKKRAKDRRDWLE 618



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           +++ R+KGLGEMN +QL E+ ++  +R LL++ I+D     ++   L+  +  + RR+++
Sbjct: 558 VNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLTISDVYDDTEMLDMLLAKKRAKDRRDWL 617

Query: 793 QE 794
           + 
Sbjct: 618 EN 619


>gi|187931098|ref|YP_001891082.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712007|gb|ACD30304.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 627

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/628 (35%), Positives = 343/628 (54%), Gaps = 15/628 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L G+A  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENP-NHLIQEIIDNSVDEVLAGFASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYEDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L+  IKR+GN+Y + F +G     L +  +    +TGT++ F P+   F    
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            N+  L++ L   + L  ++ I   ++   E          G++ ++ +    +    + 
Sbjct: 178 VNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWHFET--GLKGYLDHKLEAETLPAEP 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            +    S  +  +D    W +   E++   + N IP    GTH++GL++ +   I +Y+E
Sbjct: 236 FMIDNFSNGDSYLDAVFCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYDAIKAYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V + V + V D L+
Sbjct: 296 KN-SLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATAVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ IV+ +  + + +      +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIVENI--SKVAQKRINADKKTTRKRIMNTTIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQEI  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D+ DI+ LRY+KI I+ DAD DG HI TL+   F +    LI NG +YI +PPL+ I 
Sbjct: 473 --DNDDISALRYNKICILADADSDGLHIATLICAMFLKHFRKLIENGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            GKS  Y  DE   +  L   S    +   +     G ++   LR    D      L   
Sbjct: 531 IGKSTFYALDENERDTILTKNSKLPGKVNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLT 590

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEIN 631
               +D T +   +++     +    + 
Sbjct: 591 ISDVYDDTEMLDMLLAKKRAKDRRDWLE 618



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           +++ R+KGLGEMN +QL E+ ++  +R LL++ I+D     ++   L+  +  + RR+++
Sbjct: 558 VNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLTISDVYDDTEMLDMLLAKKRAKDRRDWL 617

Query: 793 QE 794
           + 
Sbjct: 618 EN 619


>gi|119946960|ref|YP_944640.1| DNA topoisomerase IV subunit B [Psychromonas ingrahamii 37]
 gi|119865564|gb|ABM05041.1| DNA topoisomerase IV subunit B [Psychromonas ingrahamii 37]
          Length = 629

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 213/562 (37%), Positives = 311/562 (55%), Gaps = 19/562 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD      Y++DSI++L GLD V+ RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MSDQ-----YNSDSIEVLNGLDPVRHRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H EE IS  E+I  +LHAGGKF+ K+Y++SGGL
Sbjct: 52  AATIQVILHEDQSLEVIDDGRGMPVDIHPEERISGVELIFCKLHAGGKFSGKNYEISGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS  + + I+R+G +YE++F NG     L VTG     +TGT V F P  
Sbjct: 112 HGVGISVVNALSKRVDVSIRRDGQVYEIAFENGEKVEELHVTGVCGKRNTGTTVHFHPDP 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L H L+  + L + + I   DK +    +     + G+  ++      
Sbjct: 172 AYFDSARFSVSRLLHLLKAKAVLCAGLTIKFKDKVNKNDYQWCY--QDGLNDYLLEAVAD 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            + L   P   + S  + + + ++ W  DG       + N IP   GGTH++G R  L  
Sbjct: 230 NELLPPQPFTGKFSAKSETAEWSVVWLPDGGPSLSESYVNLIPTVQGGTHVNGFRQGLLD 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + +      +    +  +D  +    +LS+K+ +P+F+ QTKE+L S +  + V  
Sbjct: 290 AMREFCDIRNLLPRG-LKLSPEDIWDRCAYILSVKIKEPQFAGQTKERLSSRQCVAFVSG 348

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL  H  EA+++    ++ +       R      RK +    +LPGKL DCS
Sbjct: 349 IVKDAFSLWLNAHVNEAELLADFCINNAQ---TRTRKTKKIARKKITQGPALPGKLTDCS 405

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            ++  + E+FLVEGDSAGGSAKQ R RE QAI+PLRGKI N      D +L+S+EI  + 
Sbjct: 406 TQETMRGEIFLVEGDSAGGSAKQARDREFQAIMPLRGKIKNTWEDDSDIILNSEEIHNI- 464

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            ++  GI   S D++ LRY KI I+ DAD DG HI TL+   F R   +++  G L++  
Sbjct: 465 -SVAIGIDPASSDLSGLRYGKICILADADSDGLHIATLICALFVRHFRAVVDAGHLFVAM 523

Query: 539 PPLYGITRGKSLQYVKDEESLE 560
           PPLY I  GK + Y  DE   +
Sbjct: 524 PPLYRIDIGKEVYYALDEAEKD 545



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  ++G +++QR+KGLGEMN  QL ETT++P+TR L+++    A +  ++   L
Sbjct: 547 VLDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTTEGAEEMLEMMDML 606

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ ++++
Sbjct: 607 LAKKRAGD----RKVWLED 621


>gi|119714278|ref|YP_921243.1| DNA gyrase subunit B [Nocardioides sp. JS614]
 gi|119534939|gb|ABL79556.1| DNA gyrase subunit B [Nocardioides sp. JS614]
          Length = 711

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 264/656 (40%), Positives = 371/656 (56%), Gaps = 45/656 (6%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            YDA +IQ+L+GL+AV+KRP MYIG T GE GLHH+I+E++DNA+DE+L GY D I +TL
Sbjct: 31  DYDASAIQVLEGLEAVRKRPGMYIGST-GERGLHHLIWEIVDNAVDEALAGYCDRIVLTL 89

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
             DG   V DNGRGIPT     + + A  + +T LHAGGKF    YKVSGGLHGVGVSVV
Sbjct: 90  LADGGIRVEDNGRGIPTGTAPGQELPALTLALTVLHAGGKFGGGGYKVSGGLHGVGVSVV 149

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSVQD 186
           NALS+ L   +K  G+++  SF  G+ D  L           TGT +T+  S DIF    
Sbjct: 150 NALSTRLVAEVKNRGHLWRQSFSAGVPDGELEQVRPVEPDEGTGTTITYWASPDIFETTT 209

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------------------ 222
            + +T+  R+RE +FLN  ++I + D+R      +                         
Sbjct: 210 HSLETITSRIREYAFLNKGLEIVVRDERPAAAEIVDAVEDDTVDPDHRGGIDDAGHDAIK 269

Query: 223 ----------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-----RDNISIDLAMRWND 267
                       Y  G+  +V +L+R K     + I  +        +++S+++AM+WN 
Sbjct: 270 RGEGGALEQIFKYDRGLIDYVEHLNRRKTAANPTVIAFEAETPESVENHMSLEVAMQWNT 329

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            + E+V  F N I   +GGTH  G R+ALT  + ++  +    KK +  V GDD REG T
Sbjct: 330 SFSESVHTFANTINTHEGGTHEEGFRAALTSLVNNWGFEWGLMKKPEDRVSGDDIREGLT 389

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV-KKVLDAS 386
           +++SIK+ +P+F  QTK KL ++E +  V+  VND L AWLE++P E + IV K    AS
Sbjct: 390 AIISIKLGEPQFEGQTKTKLGNTEAKGFVQRLVNDQLGAWLEQNPAEGRDIVRKAQAAAS 449

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
               A +       RKG+L    LPGKL+DC   +P + E+F+VEGDSAGGSA+QGR   
Sbjct: 450 ARIAARKARDLARSRKGLLGGGGLPGKLSDCQSTNPAECEVFIVEGDSAGGSARQGRDPR 509

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILP+RGKILNVE+AR DK+LS+QE+ ++I+ALGTGI QD FDI KLRYHK+++M DA
Sbjct: 510 IQAILPIRGKILNVEKARIDKVLSNQEVQSIISALGTGI-QDEFDIEKLRYHKVVLMADA 568

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDG HI TLLLT  FR M  LI  G++Y+ +PPLY +   K  ++       E   + +
Sbjct: 569 DVDGHHINTLLLTLLFRFMKPLIEGGYVYMAQPPLYRLRWNKPHEHEFVYSDAERDALLR 628

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           +  E  +       V     L   ++     +  +        +  ++ A  +   
Sbjct: 629 AGQEAGKKLPKENPVQRYKGLGE-MNAKELWETTMDPEQRLMLQVTLDDAAHADEI 683



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA +LWETT++P+ R +L+V + DA+ AD++FS LMG++VE RR FIQ N
Sbjct: 643 VQRYKGLGEMNAKELWETTMDPEQRLMLQVTLDDAAHADEIFSILMGEDVEQRRSFIQRN 702

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 703 AKDVRFLDI 711


>gi|251792940|ref|YP_003007666.1| DNA topoisomerase IV subunit B [Aggregatibacter aphrophilus NJ8700]
 gi|247534333|gb|ACS97579.1| DNA topoisomerase IV, B subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 632

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 227/646 (35%), Positives = 327/646 (50%), Gaps = 20/646 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A+ I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSANEITVLKDLEPVQLRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFASKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ + S  V DNGRG+P D+H  E +S  EVIM++LHAGGKF+ K+Y  SGGLHGVG+S
Sbjct: 58  ILHKNQSIEVIDNGRGMPVDIHPVEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQ 185
           VVNALS  + + IKR G +Y+++F NG     L V G  G   TGT V F P+   F  +
Sbjct: 118 VVNALSERVDVSIKRNGEVYKIAFENGKKVEDLTVIGICGRRTTGTTVHFKPNPKYFDSE 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +                  +       P   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNDTEDTWLYQDGLNDYLMEAVNGLVTLPEQP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +G ++ +S    +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGEFKGEKEAVSW-ALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGLLDAMRKFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  DD  +    VLS+KM DP+F+ QTKE+L S +    +   V D  S
Sbjct: 297 FRNLLPRG-VKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAMFIGGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+++    + ++       RA     RK ++   +LPGKLADCS +D   +
Sbjct: 356 LWLNQNIQTAELLADMAISSAQ---RRLRATKKVVRKKLVSGPALPGKLADCSSQDLNLT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      +++L+SQE+  +  A+  GI
Sbjct: 413 ELFLVEGDSAGGSAKQAREREYQAILPLRGKILNTWEVSPEQVLASQEVHDI--AVALGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +Y+  PPLY I 
Sbjct: 471 DPDNDDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEQGHVYVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   E  L               K  + +      ++     +  +    
Sbjct: 531 LGKDVFYALDESEKEAILDRLKGK-------KGKPNVQRFKGLGEMNPMQLRETTMDPST 583

Query: 606 PNHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAEKSE 650
               +   E          E+    +    A    N L    ++ +
Sbjct: 584 RRLVQLTFEAQGEESQETMETMDMLLAKKRAEDRKNWLQAKGDQVD 629



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 8/80 (10%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQAD 774
            ++LD +   G+KG  ++QR+KGLGEMN  QL ETT++P TR L+++       ++ +  
Sbjct: 545 EAILDRLK--GKKGKPNVQRFKGLGEMNPMQLRETTMDPSTRRLVQLTFEAQGEESQETM 602

Query: 775 DLFSRLMGDE-VEPRREFIQ 793
           +    L+  +  E R+ ++Q
Sbjct: 603 ETMDMLLAKKRAEDRKNWLQ 622


>gi|19909557|dbj|BAB86974.1| DNA gyrase subunit B [Synechococcus elongatus PCC 6301]
          Length = 545

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 260/521 (49%), Positives = 359/521 (68%), Gaps = 7/521 (1%)

Query: 48  VLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
           V+DNA+D++L GY + I V L  DGSC V+DNGRGIPTD+H + G SA E ++T LHAGG
Sbjct: 1   VVDNAVDKALAGYCNTIDVRLLKDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGG 60

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF    YKVSGGLHGVGVSVVNALS ++++ + REG  ++  F  G     L V   A +
Sbjct: 61  KFGGGGYKVSGGLHGVGVSVVNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADD 120

Query: 168 DTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREI 221
             GT+V F P + IFS    F+Y TL  RL+EL++LN+ V+I   D+R     + EP + 
Sbjct: 121 RRGTQVRFKPDATIFSETTEFDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQE 180

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNI 280
           T +++GGI  +V+Y++  K+ L    I +Q  +D + ++ A++W  D Y +N+L F NNI
Sbjct: 181 TYYFEGGIREYVAYMNTDKQALHSEIIFVQSEKDGVQVEAALQWCVDAYSDNILGFANNI 240

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH+ GL++ LTR + +   K    K    ++ G++ REG T+++S+K+PDP F 
Sbjct: 241 RTIDGGTHIEGLKTVLTRTMNTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFE 300

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EVR +V++ V + L+ +LE HP  A +I++K + A    +AARRAR+L R
Sbjct: 301 GQTKTKLGNTEVRGIVDTLVGETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVR 360

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK VL+ ++LPGKLADCS RDP +SE+F+VEGDSAGGSAKQGR R  QAILPLRGKILN+
Sbjct: 361 RKSVLESSTLPGKLADCSSRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNI 420

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+    K+  + EI  LITALG GI  + FD ++LRYH+I+IMTDADVDGAHIRTLLLTF
Sbjct: 421 EKTDDAKIYKNTEIQALITALGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTF 480

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           F+R   SL+  G++YI  PPLY + RG++  Y  +E  L++
Sbjct: 481 FYRYQRSLLEQGYMYIACPPLYKLERGRNHYYCYNERELQE 521



 Score = 45.8 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 90/281 (32%), Gaps = 45/281 (16%)

Query: 505 DADVD--GAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLE 560
           DAD +  G +IR  L      ++P     G     +    + GI      + + +     
Sbjct: 272 DADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGETLTEYLEFH 331

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQ 615
             + +  L + I+ F  ++      +L  R  + ++  +   + D         + FI +
Sbjct: 332 PSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIFIVE 391

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSIN 658
              +G    +       ++       LN       K +                     +
Sbjct: 392 GDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFD 451

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTIL-----SLIC 709
            S +   RI   +     ++G+ I +    F  +Y+R     +E+ Y+ I       L  
Sbjct: 452 ASQLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQRSL---LEQGYMYIACPPLYKLER 506

Query: 710 NGDKIKITGPCSLLDTIF---SIGRKGISMQRYKGLGEMNA 747
             +         L + I           ++QR+KGLGEM  
Sbjct: 507 GRNHYYCYNERELQERIATFPENA--NYTIQRFKGLGEMMP 545


>gi|310781169|gb|ADP24060.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 455

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 240/456 (52%), Positives = 319/456 (69%), Gaps = 3/456 (0%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAE 97
            SGLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A E
Sbjct: 1   SSGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVE 60

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           V +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+   
Sbjct: 61  VALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKT 120

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
            L V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +
Sbjct: 121 DLEVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGK 179

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F 
Sbjct: 180 E--EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFA 237

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNI  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P
Sbjct: 238 NNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNP 297

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+
Sbjct: 298 QFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARE 357

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           LTRRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKI
Sbjct: 358 LTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKI 417

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           LNVE+AR DK+LS++EI  +ITALGTG+G D     
Sbjct: 418 LNVEKARLDKILSNEEIRAMITALGTGVGDDFDISK 453


>gi|94983849|gb|ABF50629.1| DNA topoisomerase IV subunit B [Spiroplasma taiwanense]
          Length = 556

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 237/560 (42%), Positives = 339/560 (60%), Gaps = 12/560 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L G    I V++  DGS TV DNGRG+P   +K   
Sbjct: 1   GSTDS-RGLHHLVWEIVDNSIDEALAGICTEINVSIEKDGSITVKDNGRGVPIGSYKGTN 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  E+I + LHAGGKF    YK SGGLHGVG SVVNALSS  K+ I R+G I ++ F N
Sbjct: 60  QSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVIIHRDGLISQIKFAN 119

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G L  PL  TG++   TGT V FLP   +FS   F++ T+  RL+E + LNS ++I+L 
Sbjct: 120 GGKLVQPLKQTGNSK-QTGTTVNFLPDETMFSTVKFSFSTISERLKESALLNSGLKITLR 178

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +   +   Y+ G+  FV  L   +K ++  PI I+G+   I +++AM +   + E
Sbjct: 179 DNRSDK--YVEYIYENGLTEFVKELKGDQKEIISQPILIKGNEQGIDVEIAMTYTSDFSE 236

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            VL F NN+   DGGTH++G R+ L + +  Y +     K+  + +   D +EG  ++++
Sbjct: 237 TVLGFANNVKTSDGGTHITGFRTGLVKALNDYGKNQSILKEKDKKLDSTDIKEGLIAIVT 296

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+   ++  QTK KL + E ++  E    + ++ WL+E+   A  I++K L A   R
Sbjct: 297 VKIPENLIQYEGQTKGKLGTVEAKTACERVTEESINFWLQENKTIAISIIEKALLARRAR 356

Query: 390 DAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           D AR+AR   R +K  L   ++ GKL     +D   +EL+LVEGDSAGGSAK GR R+ Q
Sbjct: 357 DEARKARQAVRDQKNKLKSRTMLGKLTPAQGKDKTLNELYLVEGDSAGGSAKSGRDRKFQ 416

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+ +   +L ++EI T+I A+G GIG D FDI+ + Y KIIIMTDAD 
Sbjct: 417 AILPLRGKVINAEKTKLIDLLKNEEITTIINAIGAGIGSD-FDISDVNYGKIIIMTDADT 475

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLIN 565
           DGAHI+TLLLTFF+R M  LI N  +YI  PPL+ IT     K   Y+  EE L  ++  
Sbjct: 476 DGAHIQTLLLTFFYRYMKELIINKMIYIAMPPLFKITTSSNKKDFMYLWTEEELSQHMKK 535

Query: 566 QSLSEEIELFCDSKGVISKN 585
                EI+ +     + +  
Sbjct: 536 SKSKIEIQRYKGLGEMNADQ 555



 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 2/132 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  + I++    ++   +N I       +  S  N   ++           +    
Sbjct: 425 VINAEKTKLIDLLKNEEITTIINAIGAGIGSDFDISDVNYGKIIIMTDADTDGAHIQTLL 484

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP--CSLLDTIFSIGRKGISMQR 738
             F +    + I +  I      +  +  + +K           L       +  I +QR
Sbjct: 485 LTFFYRYMKELIINKMIYIAMPPLFKITTSSNKKDFMYLWTEEELSQHMKKSKSKIEIQR 544

Query: 739 YKGLGEMNASQL 750
           YKGLGEMNA QL
Sbjct: 545 YKGLGEMNADQL 556


>gi|115381168|gb|ABI96233.1| DNA topoisomerase IV subunit B [Entomoplasma ellychniae]
          Length = 552

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 228/558 (40%), Positives = 329/558 (58%), Gaps = 12/558 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L GY + I V L  +GS TVSDNGRG+PT +H   G
Sbjct: 1   GSTD-TRGLHHLVWEIVDNSIDEALAGYCNEINVVLEKNGSVTVSDNGRGVPTGMHA-TG 58

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  EVI + LHAGGKF    YK SGGLHGVG SVVNALS   K+ I R+  ++E+ F N
Sbjct: 59  KSTPEVIFSILHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFKVTIYRDKQVHEIEFGN 118

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G L  PL    S    TGT V FLP   IF+   +++  +  RL+E + LNS ++I+L 
Sbjct: 119 GGKLVQPLTQV-STTYKTGTMVNFLPDDSIFNTTKYSFSVISERLKESALLNSGLKITLE 177

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           DK + +  E     + G+  FV  L     P +  PI I+ +   I  ++ +++ + ++E
Sbjct: 178 DKINSKSVEYQF--ENGLIEFVKELSSEFTP-ITEPITIKNAAKRIESEICLQYTEDFNE 234

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            +L F NN+   DGGTH++G +  L R I  Y + +   K     +  +D REG  ++++
Sbjct: 235 TILGFANNVKTGDGGTHITGFKIGLVRAINDYAKNNKILKDKDARLDSNDLREGLVAIVT 294

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+    +  QTK KL + + ++ VE  V D ++ WL E+ + A  I++K + A   R
Sbjct: 295 VKIPEDLIEYEGQTKAKLGTPDAKNAVEQVVYDFMNFWLIENKVAATKIIEKAILARKAR 354

Query: 390 DAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           D AR+AR   R  KG     ++ GKL     R  + +EL+LVEGDSAGGSAK GR R  Q
Sbjct: 355 DEARKARQAVRDSKGKKTSRTMLGKLTPAQGRKKEINELYLVEGDSAGGSAKSGRDRVFQ 414

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+A+ +++L ++EI T I A         FD++ + Y K+IIMTDAD 
Sbjct: 415 AILPLRGKVINSEKAKLNELLKNEEIQT-IIAAIGAGIGQDFDVSDINYGKVIIMTDADT 473

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567
           DGAHI+TLLLTFF+R M  LI N  ++I  PPLY +T       Y+ DE  L D+    S
Sbjct: 474 DGAHIQTLLLTFFYRYMKDLITNKHIFIALPPLYKVTFADKKFIYLWDEIELNDFNKVNS 533

Query: 568 LSEEIELFCDSKGVISKN 585
              E++ +     + +  
Sbjct: 534 KKFELQRYKGLGEMNADQ 551



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 7/167 (4%)

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645
             I++   ++           +  + QA++     V N E  +   +    ++   +  I
Sbjct: 388 KEINELYLVEGDSAGGSAKSGRDRVFQAILPLRGKVINSEKAKLNELLKNEEIQTIIAAI 447

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKY-KRIFSNRIEENYLTI 704
                + +  S  N   ++           +   + + +F  +Y K + +N+     L  
Sbjct: 448 GAGIGQDFDVSDINYGKVIIMTDADTDGAHI--QTLLLTFFYRYMKDLITNKHIFIALPP 505

Query: 705 LSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750
           L  +   DK  I     + L+    +  K   +QRYKGLGEMNA QL
Sbjct: 506 LYKVTFADKKFIYLWDEIELNDFNKVNSKKFELQRYKGLGEMNADQL 552


>gi|284031369|ref|YP_003381300.1| DNA topoisomerase [Kribbella flavida DSM 17836]
 gi|283810662|gb|ADB32501.1| DNA topoisomerase (ATP-hydrolyzing) [Kribbella flavida DSM 17836]
          Length = 694

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 239/679 (35%), Positives = 344/679 (50%), Gaps = 46/679 (6%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y+A ++ +L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+L G+ D I V L
Sbjct: 14  TYNARNLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNAVDEALAGHGDRIDVVL 72

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + DGS  V D  RGIP D+  +  +S  EV+ T+LHAGGKF   SY  SGGLHGVG SVV
Sbjct: 73  HKDGSVEVRDKARGIPVDIEPKTKLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVGASVV 132

Query: 129 NALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVVTGSAGN-DTGTEV 173
           NALS+ L + + R G ++  SF  G+                  L   G A    TGT +
Sbjct: 133 NALSARLDVEVDRGGVVWTTSFRRGVAGEFDGEGATAGFTPAKGLRKAGRAKKGVTGTRI 192

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            +     IF     FNYD L  R R+ SFL   +++ + D+R  EP E +  + GGI  F
Sbjct: 193 RYWADRQIFTRDAAFNYDELVTRARQTSFLVPGLELVIRDERGHEPTEESFKHDGGISEF 252

Query: 233 VSYLDRHKK-----------------PLMQSPIRI--QGSRDNISIDLAMRWNDGYHENV 273
             +L   +K                 P++     +       ++ +D+A+RW DGY   V
Sbjct: 253 CEFLATDQKVTDVIRLTGTGHFTETVPMLDDAGHMTPTDVERDLDVDIAVRWGDGYETEV 312

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N +    GGTH++G   AL++  T  +  +   K  +  +  DD  EG TSV++++
Sbjct: 313 RSFVNIVATPKGGTHVAGFERALSKAFTGVLTGTRLLKSGEEVIK-DDVLEGLTSVVTVR 371

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDASMVR 389
           + +P+F  QTKE L +     +V   V   L  +L      AK     +++KV+ AS  R
Sbjct: 372 LAEPQFDGQTKEVLGTPAASRIVAKVVQTELEKFLTSAKGAAKAQARAVLEKVVAASRTR 431

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AAR+ R+L RRK  L+ ++LP KLADC   D  +SELF+VEGDSA G+AK  R+ E QA
Sbjct: 432 VAARQHRELQRRKTALESSALPAKLADCRSNDVDRSELFIVEGDSALGTAKLARNSEFQA 491

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           +LP+RGKILNV++A    ML + E  ++I  +G G G+  FD+ + RY KII M DAD D
Sbjct: 492 LLPIRGKILNVQKASVGDMLKNAECASIIQVVGAGSGRT-FDLEQARYGKIIFMADADSD 550

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLEDYLIN 565
           GAHIR LL T FFR M  L+  G +Y   PPL+       +    +Y+      E    +
Sbjct: 551 GAHIRCLLATLFFRYMRPLVDAGRVYTAVPPLHRFELTNPKKGQDKYIYTYSDAEYQRKS 610

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
             L ++   + +           +    A                   E A         
Sbjct: 611 AELMKKGVRWKEPPQRYKGLGEMDADQLAETTMDPRHRTLRRITVDDGEAAASVFDLLMG 670

Query: 626 SDQEINVSLASKLANRLNF 644
           +D         + A  L+ 
Sbjct: 671 NDVAPRKEFIVQGAYELDE 689



 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEM+A QL ETT++P  R+L R+ + D   A  +F  LMG++V PR+EFI + +
Sbjct: 625 QRYKGLGEMDADQLAETTMDPRHRTLRRITVDDGEAAASVFDLLMGNDVAPRKEFIVQGA 684

Query: 797 --LPSA-LDI 803
             L    +D+
Sbjct: 685 YELDENRIDV 694


>gi|163749330|ref|ZP_02156579.1| DNA topoisomerase IV subunit B [Shewanella benthica KT99]
 gi|161331049|gb|EDQ01975.1| DNA topoisomerase IV subunit B [Shewanella benthica KT99]
          Length = 628

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 220/640 (34%), Positives = 336/640 (52%), Gaps = 15/640 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y +DSI++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I +
Sbjct: 2   TKQYTSDSIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATKIEI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+ D S  V D+GRG+P D+H EEGIS  E+I+T+LHAG KF+  +Y+ SGGLHGVG+S
Sbjct: 58  TLHKDNSLEVIDDGRGMPVDIHPEEGISGVELILTKLHAGAKFSNDNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALSS +++ ++R G +Y+++F +G +   L  TG+ G  +TGT V F P    F   
Sbjct: 118 VVNALSSRVEITVRRSGIVYDIAFEHGDMVEELRETGTCGRRNTGTRVHFWPIPSYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + L+  + L   ++I   +K++ E +     Y+ G+  ++    +    L +
Sbjct: 178 NFSVSKLTYLLKAKAVLCPGLKIKFTNKQTDEVQ--EWLYESGLTDYLQSSVKDALMLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P       +  ++D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFIGSLQGNKEAVDWAITWLPEGGEYLNESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +  + +LSIK+ DP+FS QTKEKL S +  + V   V D  
Sbjct: 296 EFRNLMPRG-VKLTPEDIWDRSSFILSIKLLDPQFSGQTKEKLSSRQSAAFVSGIVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +  +A  + +  ++ +  R  + +      RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNTNIEQALALAEMCINNAHKRLKSAKK---VARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+S+E+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASEEVHNISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              D  DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  PPL+ I
Sbjct: 472 P--DCSDISELRYGKICILADADSDGLHIATLLCALFMKHYKILVEKGHIYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   +  L   +  +       ++           + +   +D   +  
Sbjct: 530 DVGKEIFYALDEAEKQGILDRIAAEKMKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                    E   +  +   +              +  +F
Sbjct: 589 VQLTIDDVEETVALMDMLLAKKRSGDRKIWLESKGDLADF 628



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +   KG + + R+KGLGEMN  QL ETT++P+TR L+++ I D  +   L   L
Sbjct: 547 ILDRIAAEKMKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDVEETVALMDML 606

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 607 LAKKRSGD----RKIWLES 621


>gi|106734233|gb|ABF82593.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. TC38]
          Length = 481

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 246/483 (50%), Positives = 339/483 (70%), Gaps = 4/483 (0%)

Query: 29  SMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH 88
            MYIG T    GLHH+++E++DN+IDE+L GY D I VT+    S  V DNGRGIP D+ 
Sbjct: 1   GMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVDIQ 59

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
           ++ G  A EVI+T LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ +KR   +Y  
Sbjct: 60  EKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKLYYQ 119

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQ 207
           ++  G+    L + G    +TGT + F P  +IF    +++YD L  RLREL+FLN  + 
Sbjct: 120 AYHRGVPAADLDIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNKGLT 178

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           I + D R+ EP   +  Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A+++ND
Sbjct: 179 IEITDDRADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQYND 238

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G+  N+  FTNNIP  +GGTH +G ++ALTR I  Y +K    K+   ++ G+D REG T
Sbjct: 239 GFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGEDVREGMT 298

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++SIK P+P+F  QTK KL +S+ R+  ++  +     ++ E+P  A+ IV+K + AS 
Sbjct: 299 AIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMMASR 358

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA+RAR+LTRRKGVL+++SLPGKLADCS RD   SE+++VEGDSAGGSAK GR R  
Sbjct: 359 ARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRDRHF 418

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMTDAD
Sbjct: 419 QAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMTDAD 477

Query: 508 VDG 510
           VDG
Sbjct: 478 VDG 480


>gi|329940010|ref|ZP_08289292.1| DNA topoisomerase IV subunit B [Streptomyces griseoaurantiacus
           M045]
 gi|329300836|gb|EGG44732.1| DNA topoisomerase IV subunit B [Streptomyces griseoaurantiacus
           M045]
          Length = 707

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 241/683 (35%), Positives = 349/683 (51%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DESL G+ D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDESLGGHCDHIEVV 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVVTGSAGNDT-GTE 172
           VNALS+ L + + R G+ + +SF  G+        P         L  T        GT 
Sbjct: 140 VNALSARLDVEVDRNGHTHAVSFRRGVPGAFTGAGPDAKFEAGGGLRKTKKIPKSRVGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V +     IF      + +TL  R R+ +FL   + I + D+          E +  + G
Sbjct: 200 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRDEYGLGEGGSKGEESFRFDG 259

Query: 228 GIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  YL   +              +  + + G    ++         +D+A+RW  G
Sbjct: 260 GISEFCEYLATDRPVCDVLRFTGQGTFKETVPVLGEDGQMTPTDVVRELGVDVALRWGTG 319

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   V  F N I    GGTH++G   A+ R     +      +  +  ++ DD  EG T+
Sbjct: 320 YDSAVRSFVNIIATPKGGTHVAGFEQAVARTFNEVLRAKKLLRVAEDDIVKDDALEGLTA 379

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL----EAKIIVKKVLD 384
           V+++++ +P+F  QTKE L +S  R +V + V+  L A+L         +A+++++K + 
Sbjct: 380 VVTVRLAEPQFEGQTKEVLGTSAARRIVANVVSKELKAFLTSTKRDAAAQARVVMEKAVA 439

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+
Sbjct: 440 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVGRSELFIVEGDSALGTAKLARN 499

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KII+MT
Sbjct: 500 SEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT-FDIDTARYGKIIMMT 558

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDG+HIRTLLLT F R M  ++  G ++   PPL+ I     +    +YV      E
Sbjct: 559 DADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDRE 618

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +   + DS          +    A              + T +E A    
Sbjct: 619 LRDRLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINLTDLEAAETVF 678

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                +D        S  A  L+
Sbjct: 679 DLLMGNDVAPRKEFISSSAATLD 701



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L D +     K I    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 608 DKYVYTYSDRELRDRLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 667

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +TD   A+ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 668 LTDLEAAETVFDLLMGNDVAPRKEFISSSA--ATLD 701


>gi|302554628|ref|ZP_07306970.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302472246|gb|EFL35339.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 706

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 236/682 (34%), Positives = 345/682 (50%), Gaps = 48/682 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIEVI 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LQDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-------------DNPLVVTGS-AGNDTGTEV 173
           VNALS+ L + + R G+ + +SF  G+                 L          TGT V
Sbjct: 140 VNALSARLDVEVDRGGHTHAISFRRGVPGAFSASGPDAKFEAGGLRKVKKIPKTRTGTRV 199

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGG 228
            +     IF      + +TL  R R+ +FL   + I + D+          E +  + GG
Sbjct: 200 RYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRDEFGLGEGGSKGEESFRFDGG 259

Query: 229 IEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDGY 269
           I  F  YL   K              +  + +      ++         +D+AMRW  GY
Sbjct: 260 ISEFCEYLASDKPVCDVLRFSGQGTFRETVPVLDEHGQMTPTQVTRELDVDVAMRWGTGY 319

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
              +  F N I    GGTH++G   A+   +   +      +  +  ++ DD  EG T+V
Sbjct: 320 DTTLRSFVNIIATPKGGTHVAGFEQAVATTMNEVLRTKKLLRVAEDDIVKDDALEGLTAV 379

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP----LEAKIIVKKVLDA 385
           +++++ +P+F  QTKE L +S  R +V + ++  L  +L         +A+++++K + A
Sbjct: 380 VTVRLAEPQFEGQTKEVLGTSAARRIVNNVISKELKGFLTSTKRDAAQQARVVLEKAVAA 439

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ +D  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+ 
Sbjct: 440 ARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARNS 499

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KII+MTD
Sbjct: 500 EFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT-FDIDTARYGKIIMMTD 558

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLED 561
           ADVDG+HIRTLLLT F R M  ++  G ++   PPL+ I     +    +YV      E 
Sbjct: 559 ADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIEIVQPKKGQDKYVYTYSDREL 618

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                    +   + DS          +    A              + + +E A     
Sbjct: 619 RDKLMEFQSKGIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINLSDLEAAEQVFD 678

Query: 622 FNCESDQEINVSLASKLANRLN 643
               +D        S  A  L+
Sbjct: 679 LLMGNDVAPRKEFISNSAATLD 700



 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L D +     KGI    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 607 DKYVYTYSDRELRDKLMEFQSKGIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 666

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           ++D   A+ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 667 LSDLEAAEQVFDLLMGNDVAPRKEFISNSA--ATLD 700


>gi|224369432|ref|YP_002603596.1| DNA topoisomerase IV subunit B [Desulfobacterium autotrophicum
           HRM2]
 gi|223692149|gb|ACN15432.1| ParE [Desulfobacterium autotrophicum HRM2]
          Length = 651

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 222/653 (33%), Positives = 334/653 (51%), Gaps = 26/653 (3%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y+ADSI++LKGLD V++RP MY  DT       H+ +EV+DN++DE++ G+A+ I V L+
Sbjct: 17  YNADSIEVLKGLDPVRRRPGMYT-DTTSPD---HLAHEVIDNSVDEAIAGFANRIDVVLH 72

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D    V DNGRG+P D+H EEG++  E+I+TRLHAG KF+ K Y  SGGLHGVGVSVVN
Sbjct: 73  ADNCLEVGDNGRGMPVDIHPEEGVTGVELILTRLHAGAKFSNKDYNFSGGLHGVGVSVVN 132

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFN 188
           ALSS+L++ I+R G ++ ++F NG  D PL +  S   N++GT + F P +  F   +F+
Sbjct: 133 ALSSYLEVNIQRGGALHRITFKNGYRDQPLTLVKSIGKNNSGTNLKFYPDASYFDRPNFS 192

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM--QS 246
              L+H L+  + L   + I+L  + + E  E    +  G+  +++        +     
Sbjct: 193 KKALKHALKAKAVLCPGLMITLFIEETGEKHEWQFEF--GLRDYLTEALAGCPTIFGSPF 250

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
              I      ++  +     +        + N IP   GGTH++G RS L   I  + + 
Sbjct: 251 TGDITAEEATVAWAVDWT-EERQANTCESYVNLIPTPLGGTHVNGFRSGLLESIREFCKF 309

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                    ++  +D  E    +LS+K+ D +FS QTKE+L S     +V S V D  S 
Sbjct: 310 RDILP-KGVNLAPEDIWENIAFILSVKLVDAQFSGQTKERLSSRHCTVIVNSAVKDAFSL 368

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           WL ++    + +    +D +  R    +      RK + +  +LPGKL+DC+  DP+KSE
Sbjct: 369 WLNQNTDFGERLANLAVDNARERLKKAKK---VTRKRITNGPALPGKLSDCTSSDPEKSE 425

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGGSAKQ R R  QAI+PL+GKILN       ++LSS+EI  +  A+G    
Sbjct: 426 LFLVEGDSAGGSAKQARDRRFQAIMPLKGKILNTWDTDSSQILSSKEIHDISVAMGVDPD 485

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            +  DI+ LRY+KI I+ DAD DG HI TLL   FFR    ++  G +++  PPL+ I  
Sbjct: 486 SE--DISSLRYNKICILADADSDGLHIATLLCALFFRHFREVVRKGHIFMAMPPLFRIDV 543

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK + Y  D+   E  +      ++       +           +      +  I     
Sbjct: 544 GKEVFYALDDPERESIIKRIQTKKKHGKINVQRFKGLGEMNPIQLR-----ETTIAPDTR 598

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                 + Q VI      E  Q+    +   +   L        + W  +  N
Sbjct: 599 R-----LVQLVIDKEGADEDGQDAEKRVFEIMDMLLGKKRAPDRRRWIEAKGN 646



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 11/71 (15%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI------TDASQAD----DLFSRLMGD 783
           I++QR+KGLGEMN  QL ETT+ PDTR L+++ I       D   A+    ++   L+G 
Sbjct: 572 INVQRFKGLGEMNPIQLRETTIAPDTRRLVQLVIDKEGADEDGQDAEKRVFEIMDMLLGK 631

Query: 784 EVEP-RREFIQ 793
           +  P RR +I+
Sbjct: 632 KRAPDRRRWIE 642


>gi|310781131|gb|ADP24041.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 453

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 244/456 (53%), Positives = 324/456 (71%), Gaps = 4/456 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L
Sbjct: 61  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 121 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NN
Sbjct: 179 -EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 238 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 298 EGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILN
Sbjct: 358 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           VE+AR DK+LS++EI  +ITALGTG+G D FDI+KL
Sbjct: 418 VEKARLDKILSNEEIRAMITALGTGVG-DDFDISKL 452


>gi|310781263|gb|ADP24107.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 453

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 242/457 (52%), Positives = 325/457 (71%), Gaps = 4/457 (0%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
           +GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV
Sbjct: 1   TGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEV 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
            +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    
Sbjct: 61  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTD 120

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  + 
Sbjct: 121 LEVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE 179

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y+GGI +FV YL+R+K+ L   PI ++       +++ M++N+ Y+EN+  F N
Sbjct: 180 --EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNNSYNENIFSFAN 237

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+
Sbjct: 238 NIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQ 297

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+L
Sbjct: 298 FEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKAREL 357

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKIL
Sbjct: 358 TRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKIL 417

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           NVE+AR DK+LS++EI  +ITALGTG+G D FDI+KL
Sbjct: 418 NVEKARLDKILSNEEIRAMITALGTGVG-DDFDISKL 453


>gi|71066648|ref|YP_265375.1| DNA topoisomerase IV subunit B [Psychrobacter arcticus 273-4]
 gi|71039633|gb|AAZ19941.1| DNA topoisomerase IV subunit B [Psychrobacter arcticus 273-4]
          Length = 628

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 222/644 (34%), Positives = 326/644 (50%), Gaps = 25/644 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y+A S+++L+GL+ V++RP MY   TD     +H+  EV+DN++DE+L GYA  I V 
Sbjct: 2   SQYNAQSLEVLEGLEPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALGGYAKTIKVQ 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS +V D+GRG+PTD H E   S  E+I+TRLHAGGKF+  +Y+VSGGLHGVG+SV
Sbjct: 58  LHSDGSLSVEDDGRGMPTDTHPEFNQSGIELILTRLHAGGKFSTSNYEVSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++ + R+   +EM+F NG     L     S     GT V F      F    
Sbjct: 118 VNALSTRVEVTVWRDSMQFEMAFENGAPVTALTETISSNKRKRGTRVRFWADGSFFDTPK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN   L+H L+  + L + + I  +D  + E          G+  ++S      + L   
Sbjct: 178 FNIKQLKHNLKAKAVLAAGLTIEFVDDINNEKVVWQF--TDGVVEYLSAQLDGLETLPPE 235

Query: 247 PIRI-----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P        +G R  I+  L+    DG       + N IP   GGTH++GLR+ +   + 
Sbjct: 236 PFYYHYDAKKGERAGITFALS-WLPDGGTPIQESYVNLIPTAQGGTHVNGLRTGILEALR 294

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + +      +    +  +D  +G   +LS+K  +P+FS QTKE+L S E  + V++   
Sbjct: 295 EFCDIHNLLPRS-VKLTAEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAAAVQTLAK 353

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D  S WL +H      I +  ++        + A+    RK +    +LPGKLADC    
Sbjct: 354 DAFSLWLNQHADMGAQIAELAIN--KAGRRLKSAKK-VARKKITQGPALPGKLADCRGDL 410

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELFLVEGDSAGGSAKQ R R  QAILPLRGKILN      D +LSSQEI  +  A+
Sbjct: 411 RDGAELFLVEGDSAGGSAKQARDRHYQAILPLRGKILNTWEVSSDTVLSSQEIHDIAIAI 470

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G      S D+++LRY K+ I+ DAD DG HI TL+   F +  P+L+  G L++  PPL
Sbjct: 471 GVDP--ASDDLSELRYDKVCILADADSDGLHIATLICALFVKHFPALVDAGHLFVAMPPL 528

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           Y +   K + Y  DE  L+  L N   + +         G +S   LR        +++ 
Sbjct: 529 YRVDVAKEVHYALDETELQHILANVPGNKKAQITRFKGLGEMSAEQLRET-----TMNRD 583

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            +          +    +  +   +       S      N  + 
Sbjct: 584 TRRLVQLDMDDMVLTNSVMDMLLAKKRAADRKSWLEDKGNLADI 627



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           L  I +   G K   + R+KGLGEM+A QL ETT+N DTR L+++ + D    + +   L
Sbjct: 546 LQHILANVPGNKKAQITRFKGLGEMSAEQLRETTMNRDTRRLVQLDMDDMVLTNSVMDML 605


>gi|294139238|ref|YP_003555216.1| DNA topoisomerase IV subunit B [Shewanella violacea DSS12]
 gi|293325707|dbj|BAJ00438.1| DNA topoisomerase IV, B subunit [Shewanella violacea DSS12]
          Length = 628

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/640 (35%), Positives = 341/640 (53%), Gaps = 15/640 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y +DSI++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I +
Sbjct: 2   TNQYTSDSIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHATKIEI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+ D S  V D+GRG+P D+H EEGIS  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+S
Sbjct: 58  TLHKDNSLEVIDDGRGMPVDIHPEEGISGVELILTKLHAGGKFSNDNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALSS +++ ++R G +Y+++F NG +   L  TG+ G  +TGT V F P    F   
Sbjct: 118 VVNALSSRVEITVRRSGIVYDIAFENGDMVEELRETGTCGRRNTGTRVHFWPIPSYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L + L+  + L   ++I   +K++ E +E     + G+  ++    +    L +
Sbjct: 178 NFSVPKLTYLLKAKAVLCPGLKIKFTNKQTDEVQEWFY--ESGLTDYLQSSTKDAIMLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P       +N ++D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFIGSLKGNNEAVDWAITWLPEGGEYLNESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +  + +LSIK+ DP+FS QTKEKL S +  + V   V D  
Sbjct: 296 EFRNLMPRG-IKLTPEDIWDRSSFILSIKLLDPQFSGQTKEKLSSRQSSAFVSGIVRDSF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL  +  +A  + +  ++ +  R  + +      RK V    +LPGKL DCS +DP +
Sbjct: 355 SLWLNTNTEQALALAEMCINNAHKRLKSAKK---VARKKVTSGPALPGKLTDCSGQDPMR 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 GELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSSQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              DS DI++LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  PPL+ I
Sbjct: 472 P--DSSDISELRYGKICILADADSDGLHIATLLCALFMKHYKILVEKGHIYVAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   +  L   +  ++      ++           + +   +D   +  
Sbjct: 530 DIGKEIFYALDEAEKQGILDRIAAEKKKGKVQVTRFKGLGEMNPLQLRE-TTMDPNTRRL 588

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                    E   +  +   +              N  +F
Sbjct: 589 VQLTIDDVEETISMMDMLLAKKRSGDRKIWLESKGNLADF 628



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ I D  +   +   L
Sbjct: 547 ILDRIAAEKKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDVEETISMMDML 606

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 607 LAKKRSGD----RKIWLES 621


>gi|109896764|ref|YP_660019.1| DNA topoisomerase IV subunit B [Pseudoalteromonas atlantica T6c]
 gi|109699045|gb|ABG38965.1| DNA topoisomerase IV subunit B [Pseudoalteromonas atlantica T6c]
          Length = 629

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 225/641 (35%), Positives = 334/641 (52%), Gaps = 18/641 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y+AD+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   SNQYNADAIEVLNGLDPVKRRPGMY---TDTTRP-NHLSQEVIDNSVDEALGGFASSIKV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEGIS  E+IMT+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHPDQSLEVTDDGRGMPVDIHAEEGISGVELIMTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ I+R+G++Y+++F NG     L V  +    ++GT V F P    F   
Sbjct: 118 VVNALSKRVEVSIRRDGSVYQIAFENGEKVEDLKVVDTCGKRNSGTRVHFWPDEQYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H LR  + L   ++I   DK S E  E     + G++ ++         L  
Sbjct: 178 KFSVTKLLHVLRAKAVLCPGLRIRFDDKVSKETHEWYF--EDGLKDYLYQSVGDSISLPA 235

Query: 246 SPIR---IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                  + G+ + +     +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 236 DAPFVGAVSGNTEAVDW-AVIWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLLESMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +  + VLS KM DP+F+ Q KE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-IKLTPEDIWDRCSYVLSTKMQDPQFAGQIKERLSSRQAAAFVSGIVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL +H   A+ + +  +  +  R    +      RK V    +LPGKL DCS +D 
Sbjct: 354 AFSLWLNQHTAIAEQLAEMCISNAQTRLRQSKK---VARKKVTQGPALPGKLTDCSTQDT 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQEI  +  ++ 
Sbjct: 411 GRSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY+K+ I+ DAD DG HI TLL   F +   +L+ NG  Y+  PPL+
Sbjct: 469 LGIDPDSDDLSGLRYNKVCILADADSDGLHIATLLCALFVKHFRTLVENGHAYVAMPPLF 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DE   +  L   +  ++       +           + +   +D   +
Sbjct: 529 RIDVGKEVFYALDEGEKQGILDRIAAEKKRGKVNVQRFKGLGEMNPLQLRE-TTMDPNTR 587

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                  +   E      +   +       S      N  +
Sbjct: 588 RLVQLTIEDPTEMLETMDMLLAKKRAGDRKSWLESKGNMAD 628



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 16/102 (15%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +  G+K  I      LD I +  ++G +++QR+KGLGEMN  QL ETT++P
Sbjct: 531 DVGKEVFYALDEGEKQGI------LDRIAAEKKRGKVNVQRFKGLGEMNPLQLRETTMDP 584

Query: 758 DTRSLLRVKITDASQADDLFSRLM-----GDEVEPRREFIQE 794
           +TR L+++ I D ++  +    L+     GD    R+ +++ 
Sbjct: 585 NTRRLVQLTIEDPTEMLETMDMLLAKKRAGD----RKSWLES 622


>gi|332304886|ref|YP_004432737.1| DNA topoisomerase IV, B subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172215|gb|AEE21469.1| DNA topoisomerase IV, B subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 629

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/641 (35%), Positives = 333/641 (51%), Gaps = 18/641 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y+AD+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   SNQYNADAIEVLNGLDPVKRRPGMY---TDTTRP-NHLSQEVIDNSVDEALGGFASSIKV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+D+GRG+P D+H EEGIS  E+IMT+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  VLHPDQSLEVTDDGRGMPVDIHAEEGISGVELIMTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ I+REG++Y+++F NG     L V  +    ++GT V F P    F   
Sbjct: 118 VVNALSKRVEVSIRREGSVYQIAFENGEKVEDLKVVDTCGKRNSGTRVHFWPDEQYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK---KP 242
            F+   L H LR  + L   ++I   DK S E  E     + G++ ++            
Sbjct: 178 KFSVTKLLHVLRAKAVLCPGLRIRFDDKVSKETHEWYF--EDGLKDYLYQSTGESITLPA 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                  + G+ + +     +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 236 DTPFVGAVSGNTEAVDW-AVIWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLLEAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  +D  +  + VLS KM DP+F+ Q KE+L S +  + V   V D
Sbjct: 295 FCEFRNLLPRG-IKLTPEDIWDRCSYVLSTKMQDPQFAGQIKERLSSRQAAAFVSGIVKD 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL +H   A+ + +  +  +  R    +      RK V    +LPGKL DCS +D 
Sbjct: 354 AFSLWLNQHTGVAEQLAEMCISNAQSRLRQSKK---VARKKVTQGPALPGKLTDCSTQDT 410

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQEI  +  ++ 
Sbjct: 411 GRSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDI--SVA 468

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY+K+ I+ DAD DG HI TLL   F R   +L+ NG  Y+  PPL+
Sbjct: 469 LGIDPDSEDLSGLRYNKVCILADADSDGLHIATLLCALFVRHFRALVENGHAYVAMPPLF 528

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK + Y  DE   +  L   +  ++       +           + +   +D   +
Sbjct: 529 RIDVGKEVFYALDEGEKQGILDRIAAEKKRGKVNVQRFKGLGEMNPLQLRE-TTMDPNTR 587

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                  +   E      +   +       S      N  +
Sbjct: 588 RLVQLTIEEPSEMLETMDMLLAKKRAGDRKSWLESKGNMAD 628



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 16/102 (15%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +  G+K  I      LD I +  ++G +++QR+KGLGEMN  QL ETT++P
Sbjct: 531 DVGKEVFYALDEGEKQGI------LDRIAAEKKRGKVNVQRFKGLGEMNPLQLRETTMDP 584

Query: 758 DTRSLLRVKITDASQADDLFSRLM-----GDEVEPRREFIQE 794
           +TR L+++ I + S+  +    L+     GD    R+ +++ 
Sbjct: 585 NTRRLVQLTIEEPSEMLETMDMLLAKKRAGD----RKSWLES 622


>gi|332994513|gb|AEF04568.1| DNA topoisomerase IV subunit B [Alteromonas sp. SN2]
          Length = 631

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 218/640 (34%), Positives = 330/640 (51%), Gaps = 22/640 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y++D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   SNQYNSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHASNIKV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EE IS  E+I+++LHAGGKF+ K+Y  SGGLHGVG+S
Sbjct: 58  ILHEDQSLEVIDDGRGMPVDIHPEEKISGVELILSKLHAGGKFSNKNYAFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS+ +++ I+R+ N+Y+++F NG     L V  +    +TGT V F P    F   
Sbjct: 118 VVNALSTRVEVTIRRDSNVYQIAFANGDKIEELAVIDTCGKRNTGTRVHFWPDPQYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H LR  + L+  ++I   +K + + +E     + G++ ++    +  + L  
Sbjct: 178 KFSASRLIHNLRAKAVLSPGLRIRFDNKIAKDSQEWYY--EDGLQDYLYQAVQEYETLPT 235

Query: 246 SPIRI-----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
               +          + ++   M   +G       + N IP   GGTH++G+R  L   +
Sbjct: 236 DVPFVGSFKGNTEGADWAV---MWLPEGGELTTESYVNLIPTAQGGTHVNGMRQGLLESM 292

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      +    +  DD  +    +LS KM DP+F+ QTKE+L S +  + V   V
Sbjct: 293 REFCEFRNLMPRG-VKLSPDDIWDRCAYILSTKMQDPQFAGQTKERLSSRQASAFVSGVV 351

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL +H   A+ +    ++ +  R    +      RK V    +LPGKL DCS +
Sbjct: 352 KDAFSLWLNQHTEVAEALADMCINNAQRRLRQNKK---VARKKVTQGPALPGKLTDCSSQ 408

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D   SELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQEI  +  +
Sbjct: 409 DISYSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDI--S 466

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +  GI  DS D++ LRY KI I+ DAD DG HI TLL   F +   +L+  G +Y+  PP
Sbjct: 467 VALGIDPDSTDLSGLRYGKICILADADSDGLHIATLLCALFVKHFRTLVDQGHVYVAMPP 526

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           L+ I  GK + Y  DE   +  L      ++       +           + +   +D  
Sbjct: 527 LFRIDVGKEVFYALDEGEKKGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRE-TTMDPN 585

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            +       +   E   +  +   +              N
Sbjct: 586 TRRLVQLTIEDSAEMLELMDMLLAKKRSGDRKIWLESKGN 625



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 17/105 (16%)

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETT 754
           RI+       +L     K        +LD I +  ++G +++QR+KGLGEMN  QL ETT
Sbjct: 529 RIDVGKEVFYALDEGEKK-------GILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETT 581

Query: 755 LNPDTRSLLRVKITDASQADDLFSRLM-----GDEVEPRREFIQE 794
           ++P+TR L+++ I D+++  +L   L+     GD    R+ +++ 
Sbjct: 582 MDPNTRRLVQLTIEDSAEMLELMDMLLAKKRSGD----RKIWLES 622


>gi|323359915|ref|YP_004226311.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Microbacterium testaceum StLB037]
 gi|323276286|dbj|BAJ76431.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Microbacterium testaceum StLB037]
          Length = 689

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/658 (34%), Positives = 327/658 (49%), Gaps = 49/658 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            S Y A  +Q+L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I +
Sbjct: 2   TSEYSAHHLQVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGHGSRIDI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ DGS  V D  RGIP D+    G++  EV+ T+LHAGGKF   SY  SGGLHGVG S
Sbjct: 61  VLHADGSVEVRDRARGIPVDVEPRTGLTGVEVVFTKLHAGGKFGGGSYAASGGLHGVGAS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGIL-----------------DNPLVVTGSAGN-D 168
           VVNALS  L + + R G  Y MSF  G                    + L V G A    
Sbjct: 121 VVNALSERLDVEVDRAGKTYAMSFHRGEPGQFAGDTPDSEFTPFERSSELRVIGKAPRGV 180

Query: 169 TGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT + +     IF     F  D L  R+R+ +FL   ++I ++D+R  E  E +  + G
Sbjct: 181 TGTRIRYWADRQIFTKDAAFGLDELVQRVRQTAFLVPGLEIVVLDERGDEKVETSYRFDG 240

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGS-------------------RDNISIDLAMRWNDG 268
           GI  F  +L           +   G+                        +D+A+RW  G
Sbjct: 241 GISEFAEFLAPDAAVTDTWRLTGTGTFTETVPVLQPGGSMIPTEVHRECEVDIAVRWGTG 300

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRSVIGDDCREGFT 327
           Y      F N I    GGTH  G    L + + + VE++    K     +  DD   G T
Sbjct: 301 YDTTTRSFVNIIATPKGGTHQQGFEQGLMKILRAQVEQNARKLKVGNDKIEKDDLLAGLT 360

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVL 383
           +VL++++P+P+F  QTKE L +  VR +V S V   L+A       + K     +++K++
Sbjct: 361 AVLTVRLPEPQFEGQTKEVLGTPAVRQIVASVVQKELAARFASPKRDDKAQTAQLLEKIV 420

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
                R +AR  ++  RRK  L+ +SLP KL DC   D   SELF+VEGDSA G+AK  R
Sbjct: 421 SEMKARISARTHKETQRRKNALESSSLPAKLVDCRSNDVNDSELFIVEGDSALGTAKLAR 480

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           + E QA+LP+RGKILN ++A    ML + E  ++I  +G G G+  FD++  RY KII+M
Sbjct: 481 NSEYQALLPIRGKILNTQKASISDMLGNAECASIIQVIGAGSGRS-FDLSAARYGKIILM 539

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL----QYVKDEESL 559
           +DADVDGAHIRTLLLT FFR M  L+  G ++   PPL+ +          + +      
Sbjct: 540 SDADVDGAHIRTLLLTLFFRYMRPLVEEGRVFAAVPPLHRVVVMNPGSKPNETIYTYSEQ 599

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
           E + +   L    + + +           +    A                  +E A 
Sbjct: 600 ELHNLLTKLKRSNKRWQEPVQRYKGLGEMDADQLATTTMDRAGRTLRRVRVQDMEAAA 657



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           +QRYKGLGEM+A QL  TT++   R+L RV++ D   A  +F  LMG +V PRREFI
Sbjct: 619 VQRYKGLGEMDADQLATTTMDRAGRTLRRVRVQDMEAAASVFDLLMGSDVAPRREFI 675


>gi|310781081|gb|ADP24016.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 238/447 (53%), Positives = 317/447 (70%), Gaps = 3/447 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 2   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 61

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L
Sbjct: 62  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 121

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 122 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 179

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NN
Sbjct: 180 -EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANN 238

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 239 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 298

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 299 EGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 358

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILN
Sbjct: 359 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILN 418

Query: 460 VERARFDKMLSSQEIGTLITALGTGIG 486
           VE+AR DK+LS++EI  +ITALGTG+G
Sbjct: 419 VEKARLDKILSNEEIRAMITALGTGVG 445


>gi|297156705|gb|ADI06417.1| DNA topoisomerase IV subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 710

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 235/686 (34%), Positives = 351/686 (51%), Gaps = 52/686 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDRIEVI 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGI--------LDNP-------LVVTGSAGNDTGTE 172
           VNALSS L + + R+   + +SF  G+         + P       L         TGT 
Sbjct: 140 VNALSSRLDVEVDRDAKTHSISFRRGVPGIFTESGPEAPFDPSSGLLKGKRVPKTRTGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-------PREITMF 224
           + +     IF      + +TL  R R+ +FL   + + + D+R+ E       P E    
Sbjct: 200 IRYWADRQIFLKDAKLSLETLYARARQTAFLVPGLTLIVRDERTAEGRDGAEGPSEEIFR 259

Query: 225 YKGGIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRW 265
           + GGI  F  YL + K              +  + +   R +++         +D+A+RW
Sbjct: 260 FDGGISEFCEYLAQDKAVCDVLRLSGQGTFKETVPVLDERGHMTPTEVTRELGVDIALRW 319

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
             GY      F N I    GGTH+SG   ++T+ +   +  +   +  +  V+ DD  EG
Sbjct: 320 GTGYDSTTKSFVNIIATLKGGTHVSGFERSVTKTVNEVLRTAKLLRVAEDDVVKDDAMEG 379

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKK 381
            T+V+++++ +P+F  QTKE L +S    +V + V   L A+L     + K     +++K
Sbjct: 380 LTAVVTVRLAEPQFEGQTKEVLGTSAASRIVANVVAKELKAFLTSTKRDDKQQARAVLEK 439

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           ++ A+  R AAR+ ++  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK 
Sbjct: 440 IVAAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKL 499

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
            R+ E QA+LP+RGKILNV++A    ML + E G++I  +G G G+  FDI++ RY K+I
Sbjct: 500 ARNSEFQALLPIRGKILNVQKASVSDMLKNAECGSIIQVIGAGSGRT-FDIDQARYGKVI 558

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEE 557
            + DADVDGAHIR LLLT F R M  ++  G ++   PPL+ +     +    +YV    
Sbjct: 559 FLADADVDGAHIRILLLTLFQRYMRPMVEQGRVFSAVPPLHRVELVNPKRGQDKYVYTYS 618

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
             E       L      + D           +    A              + + +E A 
Sbjct: 619 DHELQETLLDLQRRNVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRINISDLEAAE 678

Query: 618 ISGVFNCESDQEINVSLASKLANRLN 643
                   ++        +  A  L+
Sbjct: 679 QVFDLLMGNEVAPRKEFITNSAATLD 704



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L +T+  + R+ +     +QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 611 DKYVYTYSDHELQETLLDLQRRNVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 670

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I+D   A+ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 671 ISDLEAAEQVFDLLMGNEVAPRKEFITNSA--ATLD 704


>gi|310780937|gb|ADP23944.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 453

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 238/454 (52%), Positives = 318/454 (70%), Gaps = 3/454 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L
Sbjct: 61  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 121 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NN
Sbjct: 179 -EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 238 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 298 EGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILN
Sbjct: 358 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           VE+AR DK+LS++EI  +ITALGTG+G +     
Sbjct: 418 VEKARLDKILSNEEIRAMITALGTGVGDEFDISK 451


>gi|238063681|ref|ZP_04608390.1| DNA gyrase subunit B gyrB [Micromonospora sp. ATCC 39149]
 gi|237885492|gb|EEP74320.1| DNA gyrase subunit B gyrB [Micromonospora sp. ATCC 39149]
          Length = 703

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 232/676 (34%), Positives = 346/676 (51%), Gaps = 41/676 (6%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y AD +  L+GLDAV+KRP MYIG TD   G+ H++ E+LDN+ DE + G+A  I V L+
Sbjct: 27  YGADDLTHLEGLDAVRKRPGMYIGSTDS-RGVGHLVNEILDNSTDEGVAGHATRIEVILH 85

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS  V D+GRGIPTD+H + GIS  E+++TRLHAGGKF    YK SGGLHGVG S VN
Sbjct: 86  ADGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 145

Query: 130 ALSSWLKLRIKREGNIYEMSFINGIL---DNP-----------LVVTG--SAGNDTGTEV 173
           ALS    + ++R G ++ MSF +G+      P           L + G    G  TGT +
Sbjct: 146 ALSRRFDVTVRRGGKVHAMSFQHGVPGAFAGPGPDAAFTPGPGLQIVGAMKRGQRTGTSI 205

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            +   +  F      + + ++ +LR  +FL   V   L D    EP E T  +  G+   
Sbjct: 206 RYWHDARYFETGASLDAEAVRLKLRNTAFLVPGVSYLLRDHTGEEPVEETFHFPNGLTDM 265

Query: 233 VSYLDRHKKPLMQSPIRIQGS------------------RDNISIDLAMRWNDGYHENVL 274
           V +L       +   + + G                   +    +++A RW  GY   V 
Sbjct: 266 VEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEVEIAFRWGTGYERTVE 325

Query: 275 CFTNNIPQKDGGTHLSGL-RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           CFTN I    GGTH  G  R+       +        +  + +   DD  EG T+V+ ++
Sbjct: 326 CFTNTIRNAHGGTHRKGFERALARALADAARAARGLLRPKEDAPTLDDVLEGMTAVVHVR 385

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE--AKIIVKKVLDASMVRDA 391
           +P+P+F+SQTK++L ++ +  V++  V   + AWLE+   +  A+ +++K++DA+ VR  
Sbjct: 386 IPEPQFTSQTKDELSTAGITKVLQGLVEAHVKAWLEDRRTKAEARTVLQKIVDAARVRLT 445

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
            ++ +D  RRK  L+ AS+P KL DC      +SELF+VEGDSA G+ +  RS E QA+L
Sbjct: 446 QKQQKDAARRKTALEGASMPAKLVDCRASGIDRSELFIVEGDSALGTGRLARSAEYQALL 505

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           P+RGKILNV++A   ++L + E   ++  LG G G+  FD+  +RY +++IM DADVDGA
Sbjct: 506 PIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRT-FDLASMRYGRVLIMADADVDGA 564

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSE 570
           HIRTLL+T F R M  LI  G LY   PPL+ I TRG++ Q +      E     + L +
Sbjct: 565 HIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTIYTYTQAEMEATVRKLEK 624

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
                             +  +                    ++ A            E 
Sbjct: 625 AGRQIVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDDVDAAERILELLMGEKVEP 684

Query: 631 NVSLASKLANRLNFIA 646
             +   + A+R++  A
Sbjct: 685 RRNWLIESADRVDRDA 700



 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 9/131 (6%)

Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICNGDK-IKITGPCSL-----LDTIFSIGRK 732
            + +  ++Y R  I + R+      +  +   G     I           +  +   GR+
Sbjct: 569 LLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTIYTYTQAEMEATVRKLEKAGRQ 628

Query: 733 GIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
            ++ + R+KGLGEM+A +LWETT+NP TR++ R+ + D   A+ +   LMG++VEPRR +
Sbjct: 629 IVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDDVDAAERILELLMGEKVEPRRNW 688

Query: 792 IQENSLPSALD 802
           + E++     D
Sbjct: 689 LIESADRVDRD 699


>gi|257838320|gb|ACV71150.1| gyrase B [Bacteroides vulgatus]
          Length = 457

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 222/455 (48%), Positives = 300/455 (65%), Gaps = 5/455 (1%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           ++YEV+DN+IDE+L GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT L
Sbjct: 1   LVYEVVDNSIDEALAGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF++ SYKVSGGLHGVGVS VNALS+ +  ++ R G IY+  +  G     +   G
Sbjct: 61  HAGGKFDKGSYKVSGGLHGVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG 120

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPR 219
              + TGT+ TF P   IF+V ++ +D LQ R+REL++LN  + ISL D    +     +
Sbjct: 121 -TADITGTKQTFWPDDTIFTVTEYKFDILQARMRELAYLNKGITISLTDRRIKEEXGSFK 179

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
           +       G++ FV +L+R+ + L+   I +   ++N  I+ A+ +N GY E++  + NN
Sbjct: 180 KEIFHSDEGVKEFVRFLNRNNEALINDVIYLNTEKNNTPIECAIMYNTGYRESLHSYVNN 239

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH +G RSALTR +  Y E +   +K K  + G+D REG  +V+S+K+ +P+F
Sbjct: 240 INTIEGGTHEAGFRSALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQF 299

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SEV   V   V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR+  
Sbjct: 300 EGQTKTKLGNSEVSGAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESV 359

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           +RK  +    LPGKLADCS R+P++ ELFLVEGDSAGGSAKQGRSR  QAILPLRGKILN
Sbjct: 360 QRKSPMGGGGLPGKLADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILN 419

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           VE+A + K   S E+  +ITALG   G D  D +K
Sbjct: 420 VEKAMWHKAFESDEVNNIITALGVRFGVDGNDDSK 454


>gi|254369845|ref|ZP_04985855.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122804|gb|EDO66933.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 627

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/628 (35%), Positives = 331/628 (52%), Gaps = 15/628 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L G+A  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNIENP-NHLIQEIIDNSVDEVLAGFASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYEDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L+  IKR+GN+Y + F +G     L +  +    +TGT++ F P+   F    
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLDRHKKPLMQ 245
            N+  L++ L   + L  ++ I   ++   E           G        +        
Sbjct: 178 VNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWYFETGLKGYLDHKLEAETLPAEPFM 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G     ++       D        + N IP    GTH++GL++ +   I +Y+E
Sbjct: 238 IDNFSNGDSYLDAVFC--WCEDLSESIKNSYVNLIPTPQDGTHVTGLKNGIYDAIKAYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V + V + V D L+
Sbjct: 296 KN-SLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATAVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ IV+ +  + + +      +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIVENI--SKVAQKRINADKKTTRKRIMNTTIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQEI  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI NG +YI +PPL+ I 
Sbjct: 473 --DSDDISALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            GKS  Y  DE   +  L   S    +   +     G ++   LR    D      L   
Sbjct: 531 IGKSTFYALDENERDTILTKNSKLPGKVNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLT 590

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEIN 631
               +D T +   +++     +    + 
Sbjct: 591 ISDVYDDTEMLDMLLAKKRAKDRRDWLE 618



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           +++ R+KGLGEMN +QL E+ ++  +R LL++ I+D     ++   L+  +  + RR+++
Sbjct: 558 VNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLTISDVYDDTEMLDMLLAKKRAKDRRDWL 617

Query: 793 QE 794
           + 
Sbjct: 618 EN 619


>gi|310781085|gb|ADP24018.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781087|gb|ADP24019.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781171|gb|ADP24061.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 445

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 238/447 (53%), Positives = 317/447 (70%), Gaps = 3/447 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L
Sbjct: 61  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 121 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NN
Sbjct: 179 -EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 238 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 298 EGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILN
Sbjct: 358 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIG 486
           VE+AR DK+LS++EI  +ITALGTG+G
Sbjct: 418 VEKARLDKILSNEEIRAMITALGTGVG 444


>gi|19909719|dbj|BAB87055.1| DNA gyrase subunit B [bacterium PC3]
          Length = 474

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 274/476 (57%), Positives = 350/476 (73%), Gaps = 17/476 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HHM++EV DNAIDE+L G+ D++ + LN DGS +V DNGRGIP DLHKEEG+SAAEVIMT
Sbjct: 1   HHMVFEVSDNAIDEALAGHCDLVLIELNADGSVSVEDNGRGIPVDLHKEEGVSAAEVIMT 60

Query: 102 RLHAGGKF----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +LHAGGKF    +  +YKVSGGLHGVGVSVVNALS WL+L I R+G  + M F +G    
Sbjct: 61  QLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHWMRFEHGDAVE 120

Query: 158 PLVVTGSAGN----------DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSV 206
            L V G A              GT VTF  S D F    +F++D L+HR REL+FLNS V
Sbjct: 121 SLRVVGDAPPVESNGDENGLKKGTRVTFKASEDTFKNVTEFDFDKLEHRYRELAFLNSGV 180

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D R  EP E  +FY+GGI AFV YLDR+K+PL+  PI +   +D I ID+A++WN
Sbjct: 181 RIKLRDNRHEEPLEHDLFYEGGIAAFVKYLDRNKQPLVAEPISVSAEKDGIGIDVALQWN 240

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D Y+ENVL FTNNIPQ+DGGTHL+  R+ALTR + +Y   S   KK+K ++ G+D REG 
Sbjct: 241 DSYYENVLTFTNNIPQRDGGTHLAAFRAALTRTLNNYATASGLMKKEKVTLSGEDMREGL 300

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T+++S+K+PDP+F SQTK+KLVSSEVR  +ES + + +  WLEE+P +AK I++K++DA 
Sbjct: 301 TAIVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMGEWLEENPNDAKAIIQKIIDA- 359

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
                A R      RKG + +ASLPGKLADC +R+P   ELFLVEGDSAGGSAKQGR R+
Sbjct: 360 AAAREAARRAREMSRKGAMSVASLPGKLADCQDRNPANCELFLVEGDSAGGSAKQGRDRK 419

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            QAILPL+GKILNVERARFD+++SS+E+GTLI A+GTG+ +D F ++KLRYHKI+I
Sbjct: 420 TQAILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGL-RDEFTLDKLRYHKIVI 474


>gi|260913631|ref|ZP_05920107.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pasteurella dagmatis ATCC
           43325]
 gi|260632170|gb|EEX50345.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pasteurella dagmatis ATCC
           43325]
          Length = 632

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 233/641 (36%), Positives = 335/641 (52%), Gaps = 15/641 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A+ I ILK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GYA  I V
Sbjct: 2   TNNYSANEITILKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGYATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRG+P D+H  E +S  EVI+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHKDQSLEVIDNGRGMPVDIHPVEKVSGVEVILTKLHAGGKFSNKNYEFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + + +KR G +Y+++F NG+    L V        TGT V F P+   F   
Sbjct: 118 VVNALSERVDVTVKRNGEVYKIAFENGVKVEELEVIGTCGRRTTGTTVRFKPNPKYFDSD 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +                  +       P   
Sbjct: 178 KFSISRLRHLLRAKAVLCSGLEIKFIDKVNDTEDVWLYEDGLSDYLSEAVNGLLTLPESP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                +G ++ +S    +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGDFKGDKEAVSW-ALLWLPEGGELLGESYVNLIPTIQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  DD  E    VLS+KM DP+F+ QTKE+L S +    V   V D  S
Sbjct: 297 FRNLLPRG-VKLTADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQSAVFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADCS++D +K+
Sbjct: 356 LWLNQNVQQAEQLAEMAISSAQ---RRLRASKKVVRKKLVSGPALPGKLADCSQQDLEKT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      +++LSS EI  +  A+  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSEQVLSSTEIHDI--AVALGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I 
Sbjct: 471 DPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            GK + Y  DE   E     +     +         G ++   LR    D     +L++ 
Sbjct: 531 LGKEVFYALDEGEKEAILDRLKNKKGKPNVQRFKGLGEMNPIQLRETTMD-PNTRRLVQL 589

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
            Y   +    E   +  +   +   E   +      ++++ 
Sbjct: 590 TYNKEEDNGAETLELMDMLLAKKRSEDRKNWLQTKGDQVDL 630



 Score = 88.1 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 14/102 (13%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           +    +   +  G+K  I      LD + +  +KG  ++QR+KGLGEMN  QL ETT++P
Sbjct: 530 DLGKEVFYALDEGEKEAI------LDRLKN--KKGKPNVQRFKGLGEMNPIQLRETTMDP 581

Query: 758 DTRSLLRVKI---TD-ASQADDLFSRLMGDE-VEPRREFIQE 794
           +TR L+++      D  ++  +L   L+  +  E R+ ++Q 
Sbjct: 582 NTRRLVQLTYNKEEDNGAETLELMDMLLAKKRSEDRKNWLQT 623


>gi|310781173|gb|ADP24062.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 239/454 (52%), Positives = 318/454 (70%), Gaps = 3/454 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L
Sbjct: 61  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 121 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NN
Sbjct: 179 -EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 238 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 298 EGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILN
Sbjct: 358 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           VE+AR DK+LS++EI  +ITALGTG+G D     
Sbjct: 418 VEKARLDKILSNEEIRAMITALGTGVGDDFDISK 451


>gi|115381180|gb|ABI96239.1| DNA gyrase subunit B [Spiroplasma gladiatoris]
          Length = 551

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 230/530 (43%), Positives = 341/530 (64%), Gaps = 9/530 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G+T+  +GLHH+I+E+LDN++DE+L G+ D +T+ +  +    + DNGRGIP D+H +  
Sbjct: 1   GNTNK-NGLHHLIWEILDNSVDEALAGFCDEVTIVITEENEIIIKDNGRGIPVDIHPKTK 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            +  E I T LHAGGKF++ +YK+SGGLHGVG SVVNALS +++  + R+G +Y+  F  
Sbjct: 60  KTTLETIFTVLHAGGKFDESAYKISGGLHGVGASVVNALSLYVEAIVMRDGKMYKQYFSE 119

Query: 153 GILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISL 210
           G     PL   G A +  GT V F P  +IF     F +  +Q ++++L+FLN  ++I+L
Sbjct: 120 GGTKATPLEELG-ASDQNGTIVKFKPDPEIFKETTTFEFKIIQTKIKQLAFLNKGLKINL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
           ID++  +        + GI+ ++  ++  K+ +      +    + I +++A+++ND Y 
Sbjct: 179 IDQKYDKHLSYCF--EDGIKDYIKEINSGKEKIGSEIFYVNELFNKIDVEVAIQYNDTYD 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN+  F NNI   +GGTH  G + ++ + I  YV      K  K   I DD +EG  +V+
Sbjct: 237 ENIYSFCNNIFTSEGGTHEEGFKISILKAINYYVGNQKNYKGKK--FIFDDIKEGLCAVI 294

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SIK  DP +  QTK KL + + +  V + + +    +L ++P +AK I++K++ +   R 
Sbjct: 295 SIKHVDPLYEGQTKAKLSNLDAKEAVSNILFENFKEFLLKNPNDAKSIIEKIIISEKARK 354

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  +D  SLPGKLADC  +D + SEL+LVEGDSAGGSAK GR+R+ QAI
Sbjct: 355 AAQRAREDTRRKSAIDNFSLPGKLADCESKDAETSELYLVEGDSAGGSAKIGRNRKFQAI 414

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           L LRGK+LNVE+ +  K   + EI ++I A+GTG+ +D  ++NKLRY KI+IMTDADVDG
Sbjct: 415 LSLRGKVLNVEKVKQAKAFENNEIQSIIAAIGTGVKKDL-NLNKLRYKKIVIMTDADVDG 473

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           AHIR LLLTFF+R M  LI NG +YI +PPLY I  GK++ Y   +  LE
Sbjct: 474 AHIRVLLLTFFYRYMKELIVNGNIYIAQPPLYKIESGKNVDYAYSDLQLE 523



 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  ++      +++ + +  I    +K  + +      +V      V    +    
Sbjct: 421 VLNVEKVKQAKAFENNEIQSIIAAIGTGVKKDLNLNKLRYKKIVIMTDADVDGAHIRVLL 480

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQR 738
             F +    + I +  I       L  I +G  +        L+ + +   K +   +QR
Sbjct: 481 LTFFYRYMKELIVNGNIY-IAQPPLYKIESGKNVDYAYSDLQLEVLKNDKYKDLKYVIQR 539

Query: 739 YKGLGEMNASQL 750
           YKGLGEM+A QL
Sbjct: 540 YKGLGEMDAIQL 551


>gi|89256995|ref|YP_514357.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315355|ref|YP_764078.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503195|ref|YP_001429260.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009376|ref|ZP_02274307.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           holarctica FSC200]
 gi|290954484|ref|ZP_06559105.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312089|ref|ZP_06802902.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144826|emb|CAJ80165.1| Topoisomerase IV, subunit B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130254|gb|ABI83441.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253798|gb|ABU62304.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 627

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/628 (35%), Positives = 331/628 (52%), Gaps = 15/628 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y+A SI++L GLD VKKRP MY   T+ E+  +H+I E++DN++DE L G+A  I +T
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNIENP-NHLIQEIIDNSVDEVLAGFASKINIT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V+D+GRG+P D+H E  +S  E+IMT+LH+GGKF+ K+Y  SGGLHGVGVSV
Sbjct: 58  LYEDNSIEVADDGRGMPVDIHPEHKMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ L+  IKR+GN+Y + F +G     L +  +    +TGT++ F P+   F    
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLDRHKKPLMQ 245
            N+  L++ L   + L  ++ I   ++   E           G        +        
Sbjct: 178 VNFKALKNLLEAKAILCKALTIKYSNEIKKEKLTWHFETGLKGYLDHKLEAETLPAEPFI 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G     ++       D        + N IP    GTH++GL++ +   I +Y+E
Sbjct: 238 IDNFSNGDSYLDAVFC--WCEDLSESIKNSYVNLIPTPQDGTHVTGLKNGIYDAIKAYIE 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+         +  +D       V+S+K+ +P+F+ QTKEKL + +V + V + V D L+
Sbjct: 296 KN-SLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATAVKDLLT 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++P EA+ IV+ +  + + +      +  TR++ +     LPGKL DC   D   +
Sbjct: 355 IWLNQNPDEARQIVENI--SKVAQKRINADKKTTRKRIMNTTIRLPGKLTDCISSDVNST 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQ R +  QA+LPL+GKILN      D +++SQEI  + TA+G   
Sbjct: 413 ELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATAIGVDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS DI+ LRY+KI I+ DAD DG HI TLL   F +    LI NG +YI +PPL+ I 
Sbjct: 473 --DSDDISALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPLFRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
            GKS  Y  DE   +  L   S    +   +     G ++   LR    D      L   
Sbjct: 531 IGKSTFYALDENERDTILTKNSKLPGKVNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLT 590

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEIN 631
               +D T +   +++     +    + 
Sbjct: 591 ISDVYDDTEMLDMLLAKKRAKDRRDWLE 618



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           +++ R+KGLGEMN +QL E+ ++  +R LL++ I+D     ++   L+  +  + RR+++
Sbjct: 558 VNIMRFKGLGEMNPAQLRESAMDVSSRRLLQLTISDVYDDTEMLDMLLAKKRAKDRRDWL 617

Query: 793 QE 794
           + 
Sbjct: 618 EN 619


>gi|52424933|ref|YP_088070.1| DNA topoisomerase IV subunit B [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306985|gb|AAU37485.1| GyrB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 632

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 225/645 (34%), Positives = 334/645 (51%), Gaps = 20/645 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A+ I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A+ I V 
Sbjct: 3   NNYSAEDITVLKDLEPVQLRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGFANKIEVI 58

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V DNGRG+P D+H  E +S  E+I+++LHAGGKF+ K+Y+ SGGLHGVG+SV
Sbjct: 59  LHKDQSLEVIDNGRGMPVDIHPTEKVSGIELILSKLHAGGKFSNKNYEYSGGLHGVGISV 118

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186
           VNALS  +++ +KR+G IY++ F NG     L V G+ G  +TGT V F P+   F    
Sbjct: 119 VNALSELVEVIVKRDGQIYKIVFSNGQKIEELQVIGTCGRRNTGTTVRFKPNPKYFDSDK 178

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H LR  + L S ++I   DK +                  +    +  P    
Sbjct: 179 FSVTRLRHLLRAKAVLCSGLEIKFTDKVNDTEESWCYQDGLSDYLIEAVQGYNALPQTPF 238

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                   + +S    +   +G       + N IP   GGTH++GLR  L   +  + E 
Sbjct: 239 IGDFSADSEAVSW-ALLWLPEGGELIAESYVNLIPTIQGGTHVNGLRQGLLDAMREFCEF 297

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                +    ++ DD  +    VLS+KM DP+F+ QTKE+L S +    +   V D  S 
Sbjct: 298 RNLLPRG-VKLVADDIWDRCAYVLSLKMHDPQFAGQTKERLSSRQSAVFIGGVVKDAFSL 356

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           WL ++    + + +  ++++       RA     RK ++   +LPGKLADCS++D +K+E
Sbjct: 357 WLNQNVEIGQQLAELAINSAQ---RRLRASKKVVRKKLVSGPALPGKLADCSQQDLEKTE 413

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S+E+  +  A+  GI 
Sbjct: 414 LFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSDQVLGSEEVHNI--AIALGID 471

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +++  PPLY I  
Sbjct: 472 PDSDDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQQGHVFVAMPPLYRIDL 531

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK + Y  DE   E  L               K  + +      ++ +   +  ++    
Sbjct: 532 GKEVFYALDESEKEGILDRLKSKR-------GKPNVQRFKGLGEMNPSQLRETTMEPNTR 584

Query: 607 NHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAEKSE 650
              +   EQ   +     E     +    A    N L    ++ +
Sbjct: 585 RLVQLTYEQDETNMTETFELMDMLLAKKRAEDRKNWLQTKGDQVD 629



 Score = 88.1 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 17/88 (19%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT-DASQ 772
            LD     G       ++G  ++QR+KGLGEMN SQL ETT+ P+TR L+++    D + 
Sbjct: 538 ALDESEKEGILDRLKSKRGKPNVQRFKGLGEMNPSQLRETTMEPNTRRLVQLTYEQDETN 597

Query: 773 ADDLFSRLMGD------EVEPRREFIQE 794
             + F  LM D        E R+ ++Q 
Sbjct: 598 MTETFE-LM-DMLLAKKRAEDRKNWLQT 623


>gi|148272832|ref|YP_001222393.1| DNA topoisomerase IV subunit B [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830762|emb|CAN01702.1| putative topoisomerase II subunit B [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 692

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/597 (37%), Positives = 315/597 (52%), Gaps = 48/597 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+ D I
Sbjct: 1   MAASNYSARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGHGDRI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ DGS  V D  RG+P D+  + G+S  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 60  DVRLHPDGSVEVRDTARGVPVDIEPKTGLSGVEVVFTKLHAGGKFGSGSYASSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGS 164
            SVVNALS  L + + R G  + MSF  G                       + L V G 
Sbjct: 120 ASVVNALSERLDVEVDRGGKTHAMSFRRGEPGIFEDEGEASPDAPFRPFTSGSELRVVGK 179

Query: 165 A-GNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                TGT + +     IF+    F  + L  R R+ +FL   + I + D R  +P   +
Sbjct: 180 VRKGVTGTRIRYWADRQIFTRGASFLTEELLGRARQTAFLVPGLSIDIEDLRGEQPVRES 239

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-------------------RDNISIDLAM 263
             + GGI  FV +L           +   G+                       ++D+A+
Sbjct: 240 FRFDGGIAEFVDHLAVDAPLTDTWRLEGSGTFTETVPVLTAGGAMVPTELTRECAVDIAL 299

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRSVIGDDC 322
           RW  GY      F N I    GGTH +G  + L + + + VE +    K     +  DD 
Sbjct: 300 RWGTGYDTRFKSFVNIIATPKGGTHQAGFEAGLLKFVRAQVEANARKLKVGTDKLEKDDV 359

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI----I 378
             G T+VL+++ P+P+F  QTKE L +  VR++V   V   ++        E K     +
Sbjct: 360 LAGLTAVLTVRFPEPQFEGQTKEVLGTPAVRAIVSQVVQKAMAERFASTRREDKAQTAVL 419

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++KV+     R +AR  ++  RRK  L+ +SLP KL DC   D   SELF+VEGDSA G+
Sbjct: 420 LEKVVGEMKSRISARTHKETQRRKNALESSSLPAKLVDCRSNDVANSELFIVEGDSALGT 479

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK  R  E QA+LP+RGKILNV++A    MLS+ E  ++I  LG G G+  FD++  RY 
Sbjct: 480 AKLARDSEYQALLPIRGKILNVQKASLPDMLSNTECASIIQVLGAGSGRT-FDLSAARYG 538

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           KIIIM+DADVDGAHIRTLLLT FFR M  +I  G ++   PPL+ +          D
Sbjct: 539 KIIIMSDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVVVMNPGSKPND 595



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 25/97 (25%)

Query: 723 LDTIFSIGR---KGIS--MQRYKGLGEMNASQLWETTLN---------PDTRSLLRVKIT 768
           L  + +  +   K     +QRYKGLGEM+A QL  TT++                  ++ 
Sbjct: 605 LAAVLAQAKRQGKRYQDPIQRYKGLGEMDADQLATTTMDRRNRTLRRV---------RVD 655

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS--ALDI 803
           DA  A  +F  LMG++V PR+EFI + +      +D+
Sbjct: 656 DAEAATRMFELLMGNDVAPRKEFIIDGAGSVRDRIDV 692


>gi|94983857|gb|ABF50633.1| DNA topoisomerase IV subunit B [Spiroplasma mirum]
 gi|158954866|gb|ABW84390.1| DNA topoisomerase IV subunit B [Spiroplasma mirum]
          Length = 554

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 231/560 (41%), Positives = 345/560 (61%), Gaps = 14/560 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L G+A  I + ++ +   TV DNGRG+P   H   G
Sbjct: 1   GSTD-IRGLHHLVWEIVDNSIDEALAGFASEINIIIHKNNGITVKDNGRGVPIGKHAS-G 58

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  EVI + LHAGGKF    YK SGGLHGVG SVVNALSS   + I R+  I ++ F N
Sbjct: 59  KSTPEVIFSILHAGGKFGGDGYKTSGGLHGVGSSVVNALSSEFDVTIYRDKKISKIKFNN 118

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G L   L   GSA   TGT V F+P  +IF V DF++ T+  R+RE +FLNS ++I+L 
Sbjct: 119 GGKLAQKLTTIGSAT-TTGTTVYFVPDPEIFKVIDFSFSTISERIRESAFLNSGLKITLQ 177

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+R+ +  E       G+E F++Y++  KKP+    I  +G   +I +++A++++  ++E
Sbjct: 178 DERTDKYVEYLF--NNGLEEFITYMNEGKKPITPIII-FKGMEKDIDVEIALQYSTEFNE 234

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+L F NN+   DGG+H+ G R+ LT+ I  Y  K    K+  +++   D REG T+++S
Sbjct: 235 NLLSFANNVKTSDGGSHVVGFRTGLTKVINEYARKEGLLKEKDKNLDSTDTREGLTAIIS 294

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+   ++  QTK KL +S+V+  VE+ V   +  W+ E+   A  I++K L A   +
Sbjct: 295 VKIPESLIQYEGQTKGKLGTSDVKMAVENIVAKQMQFWMLENKTNAYAIIEKALLARTAK 354

Query: 390 DAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           + AR+AR+     ++       L GKL     ++ K +ELFLVEGDSAGGSAK GR R+ 
Sbjct: 355 EEARKAREAARGNKRKSNSERLLTGKLTPAQNKNKKVNELFLVEGDSAGGSAKSGRDRKF 414

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAIL LRGK++N E+A+   +++++EI  +I A+G G+G   FD+    Y KIIIMTDAD
Sbjct: 415 QAILSLRGKVINAEKAKLQDLMNNEEINLMIHAIGAGLGNS-FDLEDANYGKIIIMTDAD 473

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDYLIN 565
            DGAHI+TLLLTFF+R M  LI +  +YI  PPL+ IT  + K + Y  +E  L+  L +
Sbjct: 474 TDGAHIQTLLLTFFYRFMRPLIEDKRVYIALPPLFKITNLKSKKVSYAWNENELKTKLKH 533

Query: 566 QSLSEEIELFCDSKGVISKN 585
                E++ +     + ++ 
Sbjct: 534 LKDKFELQRYKGLGEMNAEQ 553



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/20 (65%), Positives = 15/20 (75%)

Query: 731 RKGISMQRYKGLGEMNASQL 750
           +    +QRYKGLGEMNA QL
Sbjct: 535 KDKFELQRYKGLGEMNAEQL 554


>gi|302542033|ref|ZP_07294375.1| DNA gyrase, B subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302459651|gb|EFL22744.1| DNA gyrase, B subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 707

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 233/683 (34%), Positives = 351/683 (51%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDRIEVH 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   +Y  SGGLHGVG SV
Sbjct: 80  LHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGAYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGI--------LDNP-------LVVTGSAGNDTGTE 172
           VNALSS L + +   G  + +SF  G+         D P       L         TGT 
Sbjct: 140 VNALSSRLDVEVDLHGKTHSISFRRGVPGIFTESGPDAPFDPSSGILKGKRVPKTRTGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKG 227
           + +     IF      + +TL  R R+ +FL   + + + D+R+ +    P E    Y G
Sbjct: 200 IRYWSDRQIFLKDAKLSLETLHARARQTAFLVPGLTLVVRDERALDGREGPVEEEFRYDG 259

Query: 228 GIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  Y          +    +   +  + +   R +++         +D+A+RW  G
Sbjct: 260 GISEFCEYLAQDKAVCDVMRLSGQGTFKETVPVLDERGHMTPTEVTRDLGVDIALRWGTG 319

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y      F N I    GGTH+SG   ++T+ +   +  S   +  +  V+ DD  EG T+
Sbjct: 320 YDATTKSFVNIIATPKGGTHVSGFERSVTKTVNEVLRSSKLLRVAEDDVVKDDVMEGLTA 379

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLD 384
           V+++++ +P+F  QTKE L +S    +V + V   L A+L     +AK     +++K++ 
Sbjct: 380 VVTVRLAEPQFEGQTKEVLGTSAASRIVANVVAKELKAFLTSAKRDAKQQARAVLEKIVA 439

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ ++  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+
Sbjct: 440 AARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARN 499

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G++I  +G G G+  FDI++ RY K+I + 
Sbjct: 500 SEFQALLPIRGKILNVQKSSVSDMLKNAECGSIIQVIGAGSGRT-FDIDQARYGKVIFLA 558

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDGAHIR LLLT F R M  ++  G ++   PPL+ +     +    +Y+      E
Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEQGRVFSAVPPLHRVELVNPKRGQEKYIYTYSDNE 618

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                  L      + D           +    A              + + +E A  + 
Sbjct: 619 LRETLLDLERRGVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRINISDLEAAEQAF 678

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                ++        +  A  L+
Sbjct: 679 HLLMGNEVAPRKEFITNSAATLD 701



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              I       L +T+  + R+G+     +QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 608 EKYIYTYSDNELRETLLDLERRGVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 667

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I+D   A+  F  LMG+EV PR+EFI  ++  + LD
Sbjct: 668 ISDLEAAEQAFHLLMGNEVAPRKEFITNSA--ATLD 701


>gi|167077359|gb|ABZ10901.1| DNA gyrase subunit B [Burkholderia vietnamiensis]
          Length = 622

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 269/626 (42%), Positives = 382/626 (61%), Gaps = 20/626 (3%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPS 178
           LSSWL+L ++R G  + M F  GI              +P++VTG    + GTEV F+  
Sbjct: 1   LSSWLRLTVRRNGKKHFMEFHRGIAQDRVLEQVDGVEVSPMLVTGDTE-NRGTEVHFMAD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++
Sbjct: 60  PTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR
Sbjct: 118 TKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE 
Sbjct: 178 VINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEE 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC 
Sbjct: 238 VVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQ 297

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+
Sbjct: 298 EKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLV 357

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP ++  G++YI +
Sbjct: 358 TALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMVERGYVYIAQ 417

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L       L   
Sbjct: 418 PPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSENGAAISGDALGELARSYLLSQ 477

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WH 654
            +I      +D   +E  +     +  S +E   + A  L   L+    K+E      + 
Sbjct: 478 SVIGRLSRLYDPAALEAIMDGVSIDL-SSEESTEASAKALHAALHDETLKNEVRVVPSYD 536

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
                  + V+R   G     V++     +   +     +   E        +      +
Sbjct: 537 PVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTAKTFEGLIQAGAVIKRGERSM 596

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYK 740
            +T   S +  + +   + +S QRYK
Sbjct: 597 AVTDFKSAMKWLLADAERNVSKQRYK 622


>gi|170782024|ref|YP_001710356.1| DNA topoisomerase IV subunit B [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156592|emb|CAQ01743.1| putative DNA gyrase subunit B [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 692

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 227/597 (38%), Positives = 315/597 (52%), Gaps = 48/597 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  S Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+ D+I
Sbjct: 1   MAASDYSARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGHGDLI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ DGS  V D  RG+P D+  + G+S  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 60  DVRLHPDGSVEVRDTARGVPVDIEPKTGLSGVEVVFTKLHAGGKFGSGSYASSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGS 164
            SVVNALS  L + + R G  Y MSF  G                       + L V G 
Sbjct: 120 ASVVNALSERLDVEVDRGGKTYAMSFRRGEPGIFEDQGEASPDAPFRPFTSGSELRVVGK 179

Query: 165 A-GNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                TGT + +     IF+    F  + L  R R+ +FL   + I + D R  +P   +
Sbjct: 180 VRKGVTGTRIRYWADRQIFTRGASFLTEELLGRARQTAFLVPGLSIDIKDLRGEQPVRES 239

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-------------------RDNISIDLAM 263
             + GGI  FV +L           +   G+                       ++D+A+
Sbjct: 240 FRFDGGIAEFVDHLAVDAPLTDTWRLEGSGTFTETVPVLTDGGAMVPTELTRECAVDIAL 299

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRSVIGDDC 322
           RW  GY      F N I    GGTH +G  + L + + + VE +    K     +  DD 
Sbjct: 300 RWGTGYDTRFKSFVNIIATPKGGTHQAGFEAGLLKFVRAQVEANARKLKVGTDKLEKDDV 359

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI----I 378
             G T+VL+++ P+P+F  QTKE L +  VR++V   V   ++        E K     +
Sbjct: 360 LAGLTAVLTVRFPEPQFEGQTKEVLGTPAVRAIVSQVVQKAMADRFASPRREDKAQTAVL 419

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++KV+     R +AR  ++  RRK  L+ +SLP KL DC   D   SELF+VEGDSA G+
Sbjct: 420 LEKVVGEMKSRISARTHKETQRRKNALESSSLPAKLVDCRSNDVANSELFIVEGDSALGT 479

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK  R  E QA+LP+RGKILNV++A    MLS+ E  ++I  LG G G+  FD++  RY 
Sbjct: 480 AKLARDSEYQALLPIRGKILNVQKASLPDMLSNTECASIIQVLGAGSGRT-FDLSAARYG 538

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           KIIIM+DADVDGAHIRTLLLT FFR M  +I  G ++   PPL+ +          D
Sbjct: 539 KIIIMSDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVVVMNPGSKPND 595



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 25/97 (25%)

Query: 723 LDTIFSIGR---KGIS--MQRYKGLGEMNASQLWETTLN---------PDTRSLLRVKIT 768
           L  + +  +   K     +QRYKGLGEM A QL  TT++                  ++ 
Sbjct: 605 LAAVLAQAKRQGKRYQDPIQRYKGLGEMGADQLATTTMDRRNRTLRRV---------RVD 655

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS--ALDI 803
           DA  A  +F  LMG++V PR+EFI + +      +D+
Sbjct: 656 DAEAATRMFELLMGNDVAPRKEFIIDGAGSVRDRIDV 692


>gi|327204532|gb|ACB10192.2| DNA gyrase subunit B [Micromonospora tulbaghiae]
          Length = 475

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 228/480 (47%), Positives = 316/480 (65%), Gaps = 10/480 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T GE GLHH+++EV+DNA+DE+L G+ D I V L  DG   V+DNGRG P DLH 
Sbjct: 1   MYIGST-GERGLHHLVWEVVDNAVDEALAGHCDTIDVVLLADGGVRVTDNGRGFPVDLHP 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           +      EV +T LHAGGKF+ K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   
Sbjct: 60  KLKKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQ 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +     PL   G   + TG+ V+F P  D+F   DF++ T+  RL+E++FL   + I 
Sbjct: 120 YNHSKP-TPLEK-GEETDRTGSAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIH 177

Query: 210 LIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
           L+D+R       + RE+T  Y+GGI  FV +L+  K P+ ++ +        +S+++AM+
Sbjct: 178 LLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVEIAMQ 237

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WN+ Y E+V  F NNI   +GGTH  G R+ALT  +  Y        K    + G+D RE
Sbjct: 238 WNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGA-EKKLLKGDERLSGEDIRE 296

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +++S+K+ DP+F  QTK KL ++ V+  V+   N+ L  W + +P EAKII++K   
Sbjct: 297 GLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQ 356

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR 
Sbjct: 357 AARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRD 416

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
              QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FDI KLRYHKI++M 
Sbjct: 417 PRVQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVLMA 475


>gi|19909675|dbj|BAB87033.1| DNA gyrase subunit B [Thermotoga sp. KU1]
          Length = 459

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 219/464 (47%), Positives = 300/464 (64%), Gaps = 12/464 (2%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           YEV+DN++DE+L GY D I VTL+ DGS  V DNGRGIP D+H EEG SA EV+ T LHA
Sbjct: 1   YEVVDNSVDEALAGYCDWIRVTLHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHA 60

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF++ SYK+SGGLHGVGVSVVNALS WL++R+ R+G IY   +  G    P+ V G  
Sbjct: 61  GGKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET 120

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            +  GT V F P   IFS  +F+ D L+HRLRE++FL   ++I   D+ + E    T  +
Sbjct: 121 -DKHGTIVRFKPDPLIFSETEFDPDVLEHRLREIAFLVPGLKIEFEDRINGEK--KTFKF 177

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSR-------DNISIDLAMRWNDGYHENVLCFTN 278
            GGI  +V YL+R KK L       +  +       D + +++A ++ D Y E+++ F N
Sbjct: 178 DGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFAN 237

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   DGGTH++  +S LTR +  Y +K    K    S  G+D REG T+V+S+ + +P 
Sbjct: 238 TIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPE 296

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV+  V   + + L    + +    K I+ K++     R+AA+RAR++
Sbjct: 297 FEGQTKSKLGNEEVKEAVTKAMREELKKIFDANSDLVKAILSKIMSTKQAREAAKRAREM 356

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            RRK VL   +LPGKLADCS    +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKIL
Sbjct: 357 VRRKNVLQNTALPGKLADCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKIL 416

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           NVE++  D++L +++I  +I A+GTGIG D FD +KLRY +III
Sbjct: 417 NVEKSSLDRLLKNEQISDIIVAVGTGIG-DDFDESKLRYGRIII 459


>gi|94983843|gb|ABF50626.1| DNA topoisomerase IV subunit B [Spiroplasma floricola]
 gi|94983845|gb|ABF50627.1| DNA topoisomerase IV subunit B [Spiroplasma floricola]
          Length = 555

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/560 (40%), Positives = 334/560 (59%), Gaps = 13/560 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L G    I V++  DGS TV DNGRG+P   +K   
Sbjct: 1   GSTDS-RGLHHLVWEIVDNSIDEALAGVCTEINVSIEKDGSVTVKDNGRGVPIGNYKGTT 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  E+I + LHAGGKF    YK SGGLHGVG SVVNALSS  K+ I R+G I ++ F N
Sbjct: 60  QSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVTIYRDGVISKIKFAN 119

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G L  PL   G      GT V FLP   +FS   F++ T+  RL+E + LNS ++++L 
Sbjct: 120 GGKLVQPLKQIG-TSKQNGTVVNFLPDETMFSTTKFSFSTISERLKESALLNSGLKLTLK 178

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +   +   Y+ G+  FV+ L   +K L    + ++GS  NI +++A+ +   + E
Sbjct: 179 DNRSDK--YVEYIYENGLTEFVNELKGGQKSLCSPIL-LKGSEQNIDVEIALTYTTDFSE 235

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            VL F NN+   DGGTH++G R+ L + +  Y +     K+  + +   D +EG  ++++
Sbjct: 236 TVLGFANNVKTSDGGTHVTGFRTGLVKALNEYGKTENILKEKDKRLDSSDIKEGLIAIVT 295

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+   ++  QTK KL +SE R+  E      +S WL+E+   A  I++K L A   +
Sbjct: 296 VKVPEDLIQYEGQTKGKLGTSEARTACEKVTEQSISFWLQENKTIAISIIEKALLARKAK 355

Query: 390 DAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           + AR+AR   R +K      ++ GKL     ++ + +ELFLVEGDSAGGSAK GR R+ Q
Sbjct: 356 EEARKARQAVRDQKSKFKARNMLGKLTPAQGKNKEDNELFLVEGDSAGGSAKSGRDRKFQ 415

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+ +   +L ++EI T+I A+G GIG D FD++   Y KII+MTDAD 
Sbjct: 416 AILPLRGKVINAEKTKLIDLLKNEEITTIINAIGAGIGSD-FDLSDSNYGKIILMTDADT 474

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLIN 565
           DGAHI+TLLLTFF+R M  LI N  +YI  PPL+ +T     K   Y+  E+ L  ++  
Sbjct: 475 DGAHIQTLLLTFFYRYMKELIINKNIYIAMPPLFKVTTGSNKKDFIYLWTEDELTKFMKK 534

Query: 566 QSLSEEIELFCDSKGVISKN 585
                EI+ +     + +  
Sbjct: 535 AKSKLEIQRYKGLGEMNADQ 554



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 2/132 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  + I++    ++   +N I       +  S +N   ++           +    
Sbjct: 424 VINAEKTKLIDLLKNEEITTIINAIGAGIGSDFDLSDSNYGKIILMTDADTDGAHIQTLL 483

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP--CSLLDTIFSIGRKGISMQR 738
             F +    + I +  I      +  +    +K           L       +  + +QR
Sbjct: 484 LTFFYRYMKELIINKNIYIAMPPLFKVTTGSNKKDFIYLWTEDELTKFMKKAKSKLEIQR 543

Query: 739 YKGLGEMNASQL 750
           YKGLGEMNA QL
Sbjct: 544 YKGLGEMNADQL 555


>gi|146284122|ref|YP_001174275.1| DNA topoisomerase IV subunit B [Pseudomonas stutzeri A1501]
 gi|145572327|gb|ABP81433.1| DNA topoisomerase IV, B subunit [Pseudomonas stutzeri A1501]
          Length = 670

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/566 (39%), Positives = 317/566 (56%), Gaps = 14/566 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           D+ +  SY A++I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+A 
Sbjct: 38  DSARQMSYTAEAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGHAR 93

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L+ D S  V D+GRG+P D+H EEG+   E+I+T+LHAGGKF+ K+Y+ SGGLHG
Sbjct: 94  AVQVILHQDSSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHG 153

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDI 181
           VG+SVVNALS+ +++ +KR+G+ Y MSF  G     L V GS    +TGT V F      
Sbjct: 154 VGISVVNALSTRVEVTVKRDGSEYRMSFAGGFKATDLEVIGSVGKRNTGTSVRFWADPKY 213

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F+   L+H L+  + L   + +S  DK + E   +   Y+ G+ +++       +
Sbjct: 214 FDSPKFSITRLKHVLKAKAVLCPGLSVSFEDKSTGEK--VEWHYEDGLRSYLVDSVSEYQ 271

Query: 242 PLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            L   P     + +  ++D A +   +G       + N IP   GGTH++GLR  L   +
Sbjct: 272 RLPDEPFVGALAGNTEAVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAM 331

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   V
Sbjct: 332 REFCEFRNLLPRG-LKLAPEDIWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVV 390

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL  HP     + +  +  +       +A     RK +    +LPGKLADC+ +
Sbjct: 391 KDAFSLWLNAHPELGMQLAELAISNA---GRRLKAGKKVERKKITQGPALPGKLADCAGQ 447

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP ++ELFLVEGDSAGGSAKQ R +E QAI+PLRGKILN       ++L+SQE+  +  A
Sbjct: 448 DPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVA 507

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G   G    D+ +LRY KI I+ DAD DG HI TLL   F +    L+  G +Y+  PP
Sbjct: 508 IGVDPGAT--DLAQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPP 565

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQ 566
           LY I  GK + Y  DE   +  L   
Sbjct: 566 LYRIDLGKDIFYALDEAERDGILERL 591



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +L+ + +  R+G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     ++   L
Sbjct: 587 ILERLVAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEGTREVMDML 646

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 647 LAKKRAGD----RKSWLES 661


>gi|257838316|gb|ACV71148.1| gyrase B [Bacteroides sartorii]
          Length = 457

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/455 (48%), Positives = 297/455 (65%), Gaps = 5/455 (1%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           ++YEV+DN+IDE+L GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT L
Sbjct: 1   LVYEVVDNSIDEALAGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF++ SYKVSGGLHGVGVS VNALS  +  ++ R G IY+  +  G     +   G
Sbjct: 61  HAGGKFDKGSYKVSGGLHGVGVSCVNALSHHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG 120

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----DKRSPEPR 219
              + TGT+ TF P   IF+V ++ +D LQ R+REL++LN  + ISL      +     +
Sbjct: 121 -TADITGTKQTFWPDDTIFTVTEYKFDILQARMRELAYLNKGITISLTDRRIQEEDGSFK 179

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
           +       G++ FV +L+R+   L+   I +   ++N  I+ A+ +N GY E++  + NN
Sbjct: 180 KEIFHSDEGVKEFVRFLNRNNDALIDDVIYLNTEKNNTPIECAIMYNTGYRESLHSYVNN 239

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH +G RSALTR +  Y E +   +K K  + G+D REG  +V+S+K+ +P+F
Sbjct: 240 INTIEGGTHEAGFRSALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQF 299

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SEV   V   V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR+  
Sbjct: 300 EGQTKTKLGNSEVSGAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESV 359

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           +RK  +    LPGKLADCS R+P++ ELFLVEGDSAGGSAKQGRSR  QAILPLRGKILN
Sbjct: 360 QRKSPMGGGGLPGKLADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILN 419

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           VE+A + K   S E+  +ITALG   G D  D +K
Sbjct: 420 VEKAMWHKAFESDEVNNIITALGVRFGVDGNDDSK 454


>gi|9971917|gb|AAG10479.1|AF279106_41 predicted topoisomerase IV subunit B [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 631

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 213/636 (33%), Positives = 329/636 (51%), Gaps = 15/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYDA +I++L GLD VKKRP MY  DT   +   H+I EVLDN++DE+L GY   I
Sbjct: 1   MAKNSYDAQAIEVLSGLDPVKKRPGMYT-DTSNPN---HLIQEVLDNSVDEALSGYCSNI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++  DG   VSD+GRG+P D H E  +S  E+I+ +LHAG KF+   Y  SGGLHGVG
Sbjct: 57  KVSVLKDGFIKVSDDGRGMPIDEHPEHKVSGVELILCKLHAGAKFSGDDYNFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           VSVVNALS  L++R+KR+   Y+++F NG   + L   G  G  ++GT + F P+   F 
Sbjct: 117 VSVVNALSDELEVRVKRDSKEYQITFNNGDKSSELKPIGEVGLRNSGTSIKFKPNPTYFE 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +     L+H L+  + L   + I  ++++  + ++    ++ G+++++         +
Sbjct: 177 TIEIQIKQLKHLLKAKAVLCPGLTIEFVNEKKTDDKQKWY-FEDGLKSYLIDSSEGADLV 235

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVL--CFTNNIPQKDGGTHLSGLRSALTRQIT 301
           +   I          ++ A+ W+    +N L   + N IP   GG+HL+G ++ L   + 
Sbjct: 236 LLDSIVCSKKSQAQELEFAINWSLRPPKNKLDETYVNLIPTAQGGSHLNGFKAGLLDSLK 295

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + E           +  DD       ++S K+ +P+F+ QTKE+L S +  S V S   
Sbjct: 296 EFCEYRN-LLPKGLKINADDVLNNAIFIISSKLQNPQFAGQTKERLDSKDHMSFVSSTTK 354

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D LS WL  H  E + I +  + ++       +  ++  RK      +LPGKL+DC+ +D
Sbjct: 355 DILSIWLNTHTEEGERIAELAIMSAQ---TRAKVSNIVERKKTFRGPALPGKLSDCNSQD 411

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
             ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN       +++ SQEI  L TA+
Sbjct: 412 LNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESAEIIKSQEIKNLSTAI 471

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G   G +  D++ LRY KI I+ DAD DG HI TLL   F R   SL+  G +YI  PPL
Sbjct: 472 GVLPGNN--DLSSLRYGKICILADADSDGLHIATLLCALFLRHYKSLVQEGRIYISMPPL 529

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I  GK + Y  D++  ++ +      +        +           + + + +D   
Sbjct: 530 YRIDSGKDVLYALDDKQRDEIVTEFKKKKGKPKVNIQRFKGLGEMNPPQLRETV-MDPAT 588

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +        +      +  +   + +         K
Sbjct: 589 RQLVQLSISSSDNANSMMDLLLSKKNAPARKEWLEK 624



 Score = 83.9 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP-RREFI 792
           +++QR+KGLGEMN  QL ET ++P TR L+++ I+ +  A+ +   L+  +  P R+E++
Sbjct: 563 VNIQRFKGLGEMNPPQLRETVMDPATRQLVQLSISSSDNANSMMDLLLSKKNAPARKEWL 622

Query: 793 QE 794
           ++
Sbjct: 623 EK 624


>gi|239917827|ref|YP_002957385.1| putative glutamate--cysteine ligase/putative amino acid ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839034|gb|ACS30831.1| putative glutamate--cysteine ligase/putative amino acid ligase
           [Micrococcus luteus NCTC 2665]
          Length = 701

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 244/696 (35%), Positives = 348/696 (50%), Gaps = 59/696 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            N+ Y+A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I 
Sbjct: 3   ANTEYNARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGFGQSIE 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +TL+ DGS  V DNGRGIP D+    G+S  EV+ T+LHAGGKF   SY  SGGLHGVG 
Sbjct: 62  ITLHPDGSVEVEDNGRGIPVDVEPRTGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGSA 165
           SVVNALSS L +++ R G +++MSF  G                       +PL V G A
Sbjct: 122 SVVNALSSRLDVQVLRGGKVHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGKA 181

Query: 166 GN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------SP 216
               TGT V +     IF     F+ + LQ R R+ ++L   ++I++ D R       + 
Sbjct: 182 KRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYLIPGLRITVKDLRRRPGTPGAD 241

Query: 217 EPREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSR---------DNI 257
            P E    Y GGI  FV +                   +  + + G              
Sbjct: 242 GPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRTC 301

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRS 316
            +D+A+RW+ GY      F N I    GGTH SG  +AL +   + VE +    K     
Sbjct: 302 EVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKVFRAQVEANARRLKAGSDK 361

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           V  DD   G T+VL++++ +P+F  QTKE L +S VR +V   V   L+A L       K
Sbjct: 362 VEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQK 421

Query: 377 I----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +++KV+     R +AR  ++  RRK  L+ +++P KLADC   D   SELF+VEG
Sbjct: 422 QQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMPAKLADCRSNDVASSELFIVEG 481

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSA G+AK  RS + QA+LP+RGKILNV++A    +L++ E   LI  +G G G+  FD+
Sbjct: 482 DSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRS-FDL 540

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKS 549
           +  RY K+++MTDADVDGAHIRTLLLT FFR M  ++  G +Y   PPL+ I    RG  
Sbjct: 541 DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVK 600

Query: 550 LQY-VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
            +  +      E +     L +E   + +           +    A              
Sbjct: 601 EREVIYTYSEQELHATLARLEQEGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRV 660

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +   +E A         S            A+ L+ 
Sbjct: 661 NIAEVEAAERVFDLLMGSAVAPRKDFIISHADELDL 696



 Score =  123 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSL---LDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLL 763
           +   + I       L   L  +   GR     +QRYKGLGEM+A QL ETT++P  R L 
Sbjct: 599 VKEREVIYTYSEQELHATLARLEQEGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLR 658

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           RV I +   A+ +F  LMG  V PR++FI  ++
Sbjct: 659 RVNIAEVEAAERVFDLLMGSAVAPRKDFIISHA 691


>gi|94983855|gb|ABF50632.1| DNA topoisomerase IV subunit B [Entomoplasma freundtii]
          Length = 554

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 242/560 (43%), Positives = 341/560 (60%), Gaps = 14/560 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L GYA  I VT+  +GS TVSDNGRG+PT +H + G
Sbjct: 1   GSTDN-RGLHHLVWEIVDNSIDEALAGYATEINVTMEKNGSITVSDNGRGVPTGMH-KTG 58

Query: 93  ISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151
            S  EVI T LHAGGKFN    YK +GGLHGVG SVVNALSS   ++  R+  IYE++F 
Sbjct: 59  KSTPEVIFTILHAGGKFNESGGYKTAGGLHGVGSSVVNALSSQFNVKSFRDKKIYEINFH 118

Query: 152 NGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL 210
           NG     PL   G   N TGT V F P + IF+   F++ T++ RL+E + LNS ++I+L
Sbjct: 119 NGGAVKTPLHEIG-TTNKTGTVVNFHPDATIFNAPKFSFSTIKERLKESALLNSGLKITL 177

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D  +    E     K G++ FV  L     PL  + I I+ S   I +D+AM++ D Y+
Sbjct: 178 DDMNNDRHIEYDF--KDGLKEFVKELTEEFTPLTDTII-IKDSNSRIDVDIAMKYTDDYN 234

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E +L F NN+   DGGT ++G +S L R I  Y + S   K     +  +D REG T+++
Sbjct: 235 ETILGFANNVKTVDGGTQITGFKSGLARAINDYAKNSKILKDKDPRLDSNDLREGLTAIV 294

Query: 331 SIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           S+K+P+   ++  QTK KL + E ++ VE+ V   L+ WL+E+ ++A  I+ K + A   
Sbjct: 295 SVKVPENLIQYEGQTKGKLGTVEAKTAVENAVYKNLTFWLQENKVQATRIIDKAMLARRA 354

Query: 389 RDAARRARDLTRRKGVLDIAS--LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
           R+ AR+AR   R   +   +S  + GKL     R+   +EL+LVEGDSAGGSAK GR R 
Sbjct: 355 REEARKARQAVRDTKMKGRSSRAMLGKLTPAQGRNRNINELYLVEGDSAGGSAKSGRDRT 414

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPLRGK++N E+A+   +L ++EI T+I A+G G+G D F++    Y KIIIMTDA
Sbjct: 415 FQAILPLRGKVINSEKAKITDLLKNEEINTIINAIGAGVGSD-FEVKDANYDKIIIMTDA 473

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLIN 565
           D DGAHI+TLLLTFF+R M  LI    +Y+  PPLY +T       Y+ DE  L  +L  
Sbjct: 474 DTDGAHIQTLLLTFFYRYMKDLIVAKKVYLALPPLYKVTLADKTIHYLWDENDLTTFLKK 533

Query: 566 QSLSEEIELFCDSKGVISKN 585
            +   +I+ +     + +  
Sbjct: 534 NNKKYDIQRYKGLGEMNAHQ 553



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 73/240 (30%), Gaps = 7/240 (2%)

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           +T +    ++ +   +    +   +     I +    +  ++E       +  +  +   
Sbjct: 319 KTAVENAVYKNLTFWLQENKVQATR----IIDKAMLARRAREEARKARQAVRDTKMKGRS 374

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEI 630
                  +         I++   ++           +    QA++     V N E  +  
Sbjct: 375 SRAMLGKLTPAQGRNRNINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKIT 434

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690
           ++    ++   +N I       +     N D ++           +      F +     
Sbjct: 435 DLLKNEEINTIINAIGAGVGSDFEVKDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMKD 494

Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
            I + ++      +  +      I      + L T      K   +QRYKGLGEMNA QL
Sbjct: 495 LIVAKKVYLALPPLYKVTLADKTIHYLWDENDLTTFLKKNNKKYDIQRYKGLGEMNAHQL 554


>gi|170719135|ref|YP_001784282.1| DNA topoisomerase IV subunit B [Haemophilus somnus 2336]
 gi|168827264|gb|ACA32635.1| DNA topoisomerase IV, B subunit [Haemophilus somnus 2336]
          Length = 630

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 227/638 (35%), Positives = 330/638 (51%), Gaps = 12/638 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V 
Sbjct: 2   TNYSAQEITVLKDLEPVQLRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHATKIEVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V DNGRG+P D+H  E +S  EVI+T+LHAGGKF+ K Y+ +GGLHGVG+SV
Sbjct: 58  LYKDQSLEVIDNGRGMPVDIHPTEKVSGVEVILTKLHAGGKFSNKHYEFAGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  + +++KR G IY+++F NG+    L + G+     TGT V F P+   F   +
Sbjct: 118 VNALSERVDIQVKRNGEIYKIAFENGVKVEELEIIGTCGKRTTGTSVHFKPNPKYFDSAN 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H LR  + L S ++I  IDK +                  +    +  P    
Sbjct: 178 FSVSRLRHLLRAKAVLCSGLEIKFIDKINNTEDTWLYQDGLSDYLMENVNGYNLLPQNPF 237

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 +++  S    +   +G       + N IP   GGTH++GLR  L   +  + E 
Sbjct: 238 VGNFSTNKEAASW-ALLWLPEGGELLNESYVNLIPTIQGGTHVNGLRQGLLDAMREFCEF 296

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                     +  DD  +    VLS+KM D +F+ QTKE+L S +    V   V D  S 
Sbjct: 297 RN-LLPKNVKLTADDIWDRCAYVLSVKMHDAQFAGQTKERLSSRQSAVFVGGVVKDSFSL 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           WL ++  +A+ + K V+ ++   +   RA     RK ++   +LPGKLADCSE+D  K+E
Sbjct: 356 WLNQNIQDAEELAKMVISSA---ERRLRAAKKVVRKKLVSGPALPGKLADCSEQDLSKTE 412

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGGSAKQ R+RE+QAILPLRGKILN      D++L SQE+  +  A+  GI 
Sbjct: 413 LFLVEGDSAGGSAKQARNREHQAILPLRGKILNTWEVSPDQVLRSQEVHDI--AIALGID 470

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I  
Sbjct: 471 PDNEDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQHGHVYVAMPPLYRIDL 530

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           G  + Y  DE   E  L               KG+   N  +          + +     
Sbjct: 531 GNEVFYALDENEKESILARLKNKRGKLNVQRFKGLGEMNPNQLRETTMDPNTRRLVQLTY 590

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
              +  +    +  +   +   E          ++++F
Sbjct: 591 EPHEEDVSTLELMDMLLAKKRSEDRKIWLQNNGDQVDF 628



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI---TDASQADDLFSRLMGDE-V 785
           ++G +++QR+KGLGEMN +QL ETT++P+TR L+++      +     +L   L+  +  
Sbjct: 553 KRGKLNVQRFKGLGEMNPNQLRETTMDPNTRRLVQLTYEPHEEDVSTLELMDMLLAKKRS 612

Query: 786 EPRREFIQEN 795
           E R+ ++Q N
Sbjct: 613 EDRKIWLQNN 622


>gi|148244667|ref|YP_001219361.1| DNA topoisomerase IV subunit B [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326494|dbj|BAF61637.1| topoisomerase IV subunit B [Candidatus Vesicomyosocius okutanii HA]
          Length = 626

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/565 (36%), Positives = 316/565 (55%), Gaps = 13/565 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SYD+ SI++L GL+ V+K P MY   T+ E   +H+  EV+DN++DE++ G+A  I V 
Sbjct: 2   NSYDSSSIEVLTGLEPVRKHPGMY---TETECP-NHLAQEVIDNSVDEAIAGFASKINVV 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  + S +V D+GRG+P D+H +EG S  EVI+T+LHAGGKF+   Y+ SGGLHGVG+SV
Sbjct: 58  LYKNNSLSVEDDGRGMPVDIHPKEGKSGVEVILTKLHAGGKFSNDLYQFSGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++ IKR+   + ++F NG     L VT   +  +TGT V F P +  F    
Sbjct: 118 VNALSTLVEIWIKRDAKEHHITFSNGSKKTELKVTRKVSKYNTGTIVKFKPDARFFDNIK 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L + LR  + L   ++I+  ++ + +       YK G++ ++S        L   
Sbjct: 178 FSATKLHNNLRSKAVLCPDLEINFYNEINEKT--DKWIYKEGLKDYLSKSLDGLDCLPTD 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P  +    +   ++ ++ W       +     N+     GTH++GLRS LT  +  + E 
Sbjct: 236 PFVVNYKTNEQQLNCSVTWTQYNTNIIAESYVNLIPTISGTHVNGLRSGLTEALKEFCEF 295

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                     +  DD  +  + VLSIK+ DP+FS QTK++L S E  S V + V D  S 
Sbjct: 296 RN-LIPKNIKLTPDDVWQKISYVLSIKIMDPQFSGQTKKRLSSRECASFVANIVKDTFSI 354

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           WL +H   AK I +  +  + ++    +      RK +     LPGKL+DC   D  ++E
Sbjct: 355 WLNQHTSMAKEIAQLAIINAQIKLKTNKK---VIRKKIFSGPILPGKLSDCISTDLNQTE 411

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +FLVEGDSAGGSAKQ R++E QAILPLRGKILN      +++L+++EI  +  A+G    
Sbjct: 412 VFLVEGDSAGGSAKQARNKEYQAILPLRGKILNTWEINSEQILANKEIHDISIAIGLEPN 471

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            +  D++ LRY KI I+ DAD DGAHI TL+ T F +  P L+  G +++  PPLY I  
Sbjct: 472 SE--DLSNLRYGKICILADADSDGAHIATLICTLFMKHFPKLVQEGHIFVAMPPLYRIDA 529

Query: 547 GKSLQYVKDEESLEDYLINQSLSEE 571
           GK + Y  +    +  +       +
Sbjct: 530 GKQVYYALNNNERDTIIRKVKNENK 554



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 11/86 (12%)

Query: 722 LLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF--- 777
           ++  + +  ++  I +QR+KGLGEMN SQL ETT+  +TR L+++   +      +F   
Sbjct: 545 IIRKVKNENKRVKIQVQRFKGLGEMNPSQLRETTMLSNTRHLIQLTSNNPL---QIFKTM 601

Query: 778 SRLMGDE-VEPRREFIQENSLPSALD 802
             L+  +    R+++++EN     LD
Sbjct: 602 DMLLSKKRAADRKKWLEENG---NLD 624


>gi|297518854|ref|ZP_06937240.1| DNA gyrase subunit B [Escherichia coli OP50]
          Length = 348

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 201/350 (57%), Positives = 261/350 (74%), Gaps = 4/350 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 348


>gi|167077353|gb|ABZ10898.1| DNA gyrase subunit B [Burkholderia cenocepacia]
          Length = 622

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 271/626 (43%), Positives = 387/626 (61%), Gaps = 20/626 (3%)

Query: 132 SSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSS 179
           SSWL+L ++R+G    M F  G+              +P++VTG    + GTEV F+   
Sbjct: 1   SSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTE-NRGTEVHFMADP 59

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++ 
Sbjct: 60  TIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKT 117

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR 
Sbjct: 118 KTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRV 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  
Sbjct: 178 INKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEV 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E
Sbjct: 238 VAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+T
Sbjct: 298 KDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVT 357

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +P
Sbjct: 358 ALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQP 417

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L       L    
Sbjct: 418 PLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQS 477

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHG 655
           +I      +D   +E AV+ GV    S++E   + A  L   L+  A K+E      +  
Sbjct: 478 VIDRLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEVRVVPSYDA 536

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
                 + V+R   G     V++     +   +     +N  +        +      + 
Sbjct: 537 VREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMA 596

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKG 741
           +    S +  + +   + +S QRYKG
Sbjct: 597 VADFKSAMKWLLADAERNVSKQRYKG 622


>gi|257838318|gb|ACV71149.1| gyrase B [Bacteroides uniformis]
          Length = 458

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 219/457 (47%), Positives = 298/457 (65%), Gaps = 5/457 (1%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           ++YEV+DN+ DE+L GY D I VT+N D S TV DNGRGIP D H++E  SA EV+MT L
Sbjct: 1   LVYEVVDNSFDEALAGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVVMTVL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF++ SYKVSGGLHGVGVS VNALS+ +  ++ R G IY+  +  G     +   G
Sbjct: 61  HAGGKFDKGSYKVSGGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYSCGHPLYSVKEVG 120

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----R 219
              + TGT   F P   IF+   +NYD L  R+REL++LN+ ++ISL D R  +     +
Sbjct: 121 -TTDITGTRQQFWPDGTIFTETVYNYDILATRMRELAYLNAGIKISLTDLRVKDEEGNAK 179

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
           +   + + G++ FV Y+D  ++  M   I I   +    +++A+ +N  Y+ENV  + NN
Sbjct: 180 KEIFYSEEGLKEFVRYVDSSREHFMNDVIYINTEKQGTPVEVAIMYNTSYNENVHSYVNN 239

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTHL+G R ALTR +  Y E +   +K K  + GDD REG T+V+SIK+ +P+F
Sbjct: 240 INTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQF 299

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV   V+  V + L+ +LEEHP EAK+IV KV+ A+  R AAR+AR+  
Sbjct: 300 EGQTKTKLGNNEVMGAVDQAVGEALTYYLEEHPKEAKLIVDKVILAAQARIAARKARESV 359

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           +RK  +    +PGKLADCS +DP++ ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILN
Sbjct: 360 QRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILN 419

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           VE+A + K   S E+  +I ALG   G D  D  +  
Sbjct: 420 VEKAMWHKAFESDEVNNIIQALGIRFGVDGEDSKEAN 456


>gi|221133993|ref|ZP_03560298.1| DNA topoisomerase IV subunit B [Glaciecola sp. HTCC2999]
          Length = 630

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 221/574 (38%), Positives = 318/574 (55%), Gaps = 20/574 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+      Y++D+I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MSEQ-----YNSDAIEVLNGLDPVKRRPGMY---TDTTRP-NHLSQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H EE IS  E+IMT+LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASSIKVILHDDQSLEVIDDGRGMPVDIHPEEKISGVELIMTKLHAGGKFSNKNYEFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS  +++ I+R+  ++++ F NG   + L V  +    +TGT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTIRRDAQVHQIVFANGDKISELAVIDTCGKRNTGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F   +F+   L H LR  + L   ++I   +K S E  E     + G+  ++    + 
Sbjct: 172 SYFDSGNFSVRQLLHVLRAKAVLCPGLRIRFDNKISKETTEWYY--EDGLRDYLYDSVKE 229

Query: 240 KKPLMQSPIRIQGSRDNISIDL--AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            + L      +     N        M   +G       + N IP   GGTH++GLR  L 
Sbjct: 230 FETLPTDEPFVGAYSGNHEAADWAVMWLPEGGDMVTESYVNLIPTAQGGTHVNGLRQGLL 289

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + E      +    +  DD  +  + +LS KM DP+F+ QTKE+L S +  + V 
Sbjct: 290 ESMREFCEFRNLLPRG-VKLSPDDIWDRCSYILSTKMQDPQFAGQTKERLSSRQAAAFVS 348

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL +H   A+++ +  ++ +  R    +      RK V    +LPGKL DC
Sbjct: 349 GIVKDAFSLWLNQHTDIAELLAEMCINNAQKRLRQTKK---VARKKVTQGPALPGKLTDC 405

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S +D  +SELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQEI  +
Sbjct: 406 SSQDNSRSELFLVEGDSAGGSAKQARDREIQAIMPLRGKILNSWEVDSSQVLASQEIHDI 465

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI  DS D++ LRY KI I+ DAD DG HI TLL   F +   +L+  G +Y+ 
Sbjct: 466 --SVALGIDPDSEDLSGLRYGKICILADADSDGLHIATLLCALFVKHFRTLVEQGHVYVA 523

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
            PPL+ I  GK + Y  DE   +  L       +
Sbjct: 524 MPPLFRIDIGKEVYYALDESEKQGILDRIEAENK 557



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I +  ++G +++QR+KGLGEMN  QL ETT++P+TR L+++ + DA Q  +L   L
Sbjct: 548 ILDRIEAENKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTVGDAEQMLELMDML 607


>gi|110668558|ref|YP_658369.1| DNA gyrase / DNA topoisomerase II subunit B [Haloquadratum walsbyi
           DSM 16790]
 gi|109626305|emb|CAJ52763.1| DNA gyrase / DNA topoisomerase II subunit B [Haloquadratum walsbyi
           DSM 16790]
          Length = 852

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 220/440 (50%), Positives = 294/440 (66%), Gaps = 10/440 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     + Y A  IQ+L+GL+AV+KRP+MYIG TD   GLHH++YEV+DNAIDE+L G+
Sbjct: 1   MS---HETEYGAGDIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNAIDEALAGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VTL+ DGS +V+DNGRGIP D H++  I A EVIMT LHAGGKF+ KSY+VSGGL
Sbjct: 57  CDQIDVTLHEDGSVSVADNGRGIPVDTHEQHDIPAVEVIMTVLHAGGKFDNKSYQVSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTG--SAGNDTGTEVTFLP 177
           HGVGVSVVNALS WL++ IKR+G ++   F  G                 +TGT + F P
Sbjct: 117 HGVGVSVVNALSRWLEVEIKRDGALWRDRFEYGEPQPGAFERVRDLDPDEETGTTIRFWP 176

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S DIF   +F + TL++RLREL+FLNS V+I +  +   +       + GGI  FV YLD
Sbjct: 177 SDDIFETTEFEFSTLENRLRELAFLNSGVEICINGET--DDINSKFCFNGGIREFVKYLD 234

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K  L  S +  Q  +D I +++A++  +    ++  F NNI  ++GGTHL+G ++ALT
Sbjct: 235 ETKTVLHDSVVHYQNEQDGIEVEVALQATEELQGSIHAFANNINTREGGTHLTGFKTALT 294

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y  +         S+ G+D REG T+V+SIK PDP+F  QTK KL +S+VR +VE
Sbjct: 295 RVINDYGREHNLLDGFD-SLQGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDVRGIVE 353

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S  ++ L  +LEE+P  AK+IV+K ++A+  R AA++A +LTRRK  L+  SLPGKLADC
Sbjct: 354 STTHERLGTYLEENPDVAKVIVRKAVEAAKARKAAKQAEELTRRKSALESTSLPGKLADC 413

Query: 418 SERDPKKSELFLVEGDSAGG 437
             RDP +SELF+VEGDSAGG
Sbjct: 414 QSRDPAESELFIVEGDSAGG 433



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
            +QR+KGLGEMN  QLWETT+NP+ R L ++ I DA+ AD +FS LMGD VEPR+EFI++
Sbjct: 783 QVQRFKGLGEMNPEQLWETTMNPENRVLKQITIEDAAAADKMFSVLMGDAVEPRKEFIKD 842

Query: 795 NSLPSA-LDI 803
            +  +  +DI
Sbjct: 843 RATDAEWVDI 852



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 101/199 (50%), Gaps = 2/199 (1%)

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
               R       V+ + SL           P      L  G     SAKQGR R  QAIL
Sbjct: 603 QISERADVHNHTVISVESLTETADVYDLEVPVTHNFALASGVFVHNSAKQGRERRFQAIL 662

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PL+GKILNVE+ R D++L + E+  LITA+G GIG D F++   RY+++II++DADVDGA
Sbjct: 663 PLKGKILNVEKHRLDRILENDEVRALITAIGAGIG-DEFNVEDARYNRLIILSDADVDGA 721

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SE 570
           HIRTLLLT  +R M  L+  G++Y  KPPLY I    +      +   +  + +    + 
Sbjct: 722 HIRTLLLTLLYRHMRPLVEAGYVYAAKPPLYRIRYNGNTYDAMTKSERDQVISDVCNGNP 781

Query: 571 EIELFCDSKGVISKNDLRN 589
                    G ++   L  
Sbjct: 782 TQVQRFKGLGEMNPEQLWE 800


>gi|310780897|gb|ADP23924.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 243/455 (53%), Positives = 323/455 (70%), Gaps = 4/455 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILNV
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNV 417

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           E+AR DK+LS++EI  +ITALGTG+G D FDI+KL
Sbjct: 418 EKARLDKILSNEEIRAMITALGTGVG-DDFDISKL 451


>gi|115381160|gb|ABI96229.1| DNA gyrase subunit B [Spiroplasma montanense]
          Length = 552

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 228/542 (42%), Positives = 343/542 (63%), Gaps = 10/542 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G+T+  +GLHH+I+E+LDNA+DE+L G+ + IT+ L  +    + DNGRGIP D+H +  
Sbjct: 1   GNTNK-NGLHHLIWEILDNAVDEALAGFCNEITIILTDENEIIIQDNGRGIPIDIHPKTN 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            +  E I T LHAGGKFN+ +YK+SGGLHGVG SVVNALS +++  + R   IY   F +
Sbjct: 60  KTTLETIFTVLHAGGKFNEDTYKISGGLHGVGASVVNALSVYVEALVLRNNKIYHQKFSD 119

Query: 153 GILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISL 210
           G      L   G   +  GT + F P   IF    +F++ T+Q ++++L+FLN  ++  L
Sbjct: 120 GGTKATSLKEIG-VSDTNGTIIKFKPDPKIFKETINFDFKTIQSKIKQLAFLNKGLKFFL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D+   +        + GI+ ++  ++  K+ +      I    + I  ++A+++ND Y 
Sbjct: 179 YDQTKDKTTVYFF--EDGIKDYIKEINSGKEKINDKIFYISNKYEKIEAEIAIQYNDSYD 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           ENV  F NNI   +GGTH  G ++AL +   +Y  +    K +K     D+ +EG  +++
Sbjct: 237 ENVFSFCNNIFTSEGGTHEDGFKNALIKSFNNYTNELKNFKGNKFV--WDEIKEGLCAII 294

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K  DP +  QTK KL + + +  + + + DG + +L ++P EAK I++K+L +   R 
Sbjct: 295 SVKHNDPLYEGQTKSKLSNVDAKEAILNVLADGFTEYLLKNPNEAKKIIEKILISQKARK 354

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+  RRK  +D  SLPGKLADC  ++  +SEL+LVEGDSAGGSAK GR+R++QAI
Sbjct: 355 AAQRAREDIRRKSTMDNFSLPGKLADCESKNAAESELYLVEGDSAGGSAKTGRNRKHQAI 414

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           L L+GK+LNVE+ +  K   + EI ++I A+GTG+ ++ F+I K+RY+KIIIMTDADVDG
Sbjct: 415 LSLKGKVLNVEKVKQSKAFENNEIQSIIAAIGTGVKKE-FNIEKIRYNKIIIMTDADVDG 473

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS-LQYVKDEESLEDYLINQSLS 569
           AHIR LLLTFF+R M  LI NG +YI +PPLY I   K  + Y   +  LE+   NQ ++
Sbjct: 474 AHIRVLLLTFFYRYMKELILNGNIYIAQPPLYKIEDDKKNVAYAYSDSELEELKKNQFIN 533

Query: 570 EE 571
           ++
Sbjct: 534 KK 535



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  ++      +++ + +  I    +K ++      + ++      V    +    
Sbjct: 421 VLNVEKVKQSKAFENNEIQSIIAAIGTGVKKEFNIEKIRYNKIIIMTDADVDGAHIRVLL 480

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG--RKGISMQR 738
             F +    + I +  I      +  +  +   +      S L+ +       K   +QR
Sbjct: 481 LTFFYRYMKELILNGNIYIAQPPLYKIEDDKKNVAYAYSDSELEELKKNQFINKKYVIQR 540

Query: 739 YKGLGEMNASQL 750
           YKGLGEM+  QL
Sbjct: 541 YKGLGEMDPIQL 552


>gi|281413680|ref|ZP_06245422.1| DNA topoisomerase IV subunit B [Micrococcus luteus NCTC 2665]
          Length = 692

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 241/668 (36%), Positives = 343/668 (51%), Gaps = 59/668 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            N+ Y+A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I 
Sbjct: 3   ANTEYNARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGFGQSIE 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +TL+ DGS  V DNGRGIP D+    G+S  EV+ T+LHAGGKF   SY  SGGLHGVG 
Sbjct: 62  ITLHPDGSVEVEDNGRGIPVDVEPRTGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGSA 165
           SVVNALSS L +++ R G +++MSF  G                       +PL V G A
Sbjct: 122 SVVNALSSRLDVQVLRGGKVHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGKA 181

Query: 166 GN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------SP 216
               TGT V +     IF     F+ + LQ R R+ ++L   ++I++ D R       + 
Sbjct: 182 KRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYLIPGLRITVKDLRRRPGTPGAD 241

Query: 217 EPREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSR---------DNI 257
            P E    Y GGI  FV +                   +  + + G              
Sbjct: 242 GPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRTC 301

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRS 316
            +D+A+RW+ GY      F N I    GGTH SG  +AL +   + VE +    K     
Sbjct: 302 EVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKVFRAQVEANARRLKAGSDK 361

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           V  DD   G T+VL++++ +P+F  QTKE L +S VR +V   V   L+A L       K
Sbjct: 362 VEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQK 421

Query: 377 I----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +++KV+     R +AR  ++  RRK  L+ +++P KLADC   D   SELF+VEG
Sbjct: 422 QQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMPAKLADCRSNDVASSELFIVEG 481

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSA G+AK  RS + QA+LP+RGKILNV++A    +L++ E   LI  +G G G+  FD+
Sbjct: 482 DSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRS-FDL 540

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKS 549
           +  RY K+++MTDADVDGAHIRTLLLT FFR M  ++  G +Y   PPL+ I    RG  
Sbjct: 541 DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVK 600

Query: 550 LQY-VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
            +  +      E +     L +E   + +           +    A              
Sbjct: 601 EREVIYTYSEQELHATLARLEQEGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRV 660

Query: 609 DKTFIEQA 616
           +   +E A
Sbjct: 661 NIAEVEAA 668



 Score =  123 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSL---LDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLL 763
           +   + I       L   L  +   GR     +QRYKGLGEM+A QL ETT++P  R L 
Sbjct: 599 VKEREVIYTYSEQELHATLARLEQEGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLR 658

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           RV I +   A+ +F  LMG  V PR++FI  ++
Sbjct: 659 RVNIAEVEAAERVFDLLMGSAVAPRKDFIISHA 691


>gi|7546302|pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
           Mechanism For Activating The Atpase Catalytic Center
 gi|7546303|pdb|1EI1|B Chain B, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
           Mechanism For Activating The Atpase Catalytic Center
          Length = 391

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/371 (56%), Positives = 276/371 (74%), Gaps = 4/371 (1%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSC 74
           I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S 
Sbjct: 9   IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV 68

Query: 75  TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW 134
           +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  
Sbjct: 69  SVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQK 128

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQ 193
           L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   +F Y+ L 
Sbjct: 129 LELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVTEFEYEILA 187

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLRELSFL+S V I L DKR  +       Y+GGI+AFV YL+++K P+  +       
Sbjct: 188 KRLRELSFLDSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTE 245

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK 
Sbjct: 246 KDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKA 305

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P 
Sbjct: 306 KVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPT 365

Query: 374 EAKIIVKKVLD 384
           +AKI+V K++D
Sbjct: 366 DAKIVVGKIID 376


>gi|289706927|ref|ZP_06503264.1| DNA gyrase, B subunit, carboxyl terminus [Micrococcus luteus SK58]
 gi|289556362|gb|EFD49716.1| DNA gyrase, B subunit, carboxyl terminus [Micrococcus luteus SK58]
          Length = 701

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 243/695 (34%), Positives = 347/695 (49%), Gaps = 59/695 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            N+ Y+A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I 
Sbjct: 3   ANTEYNARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGFGQSIE 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +TL+ DGS  V DNGRGIP D+    G+S  EV+ T+LHAGGKF   SY  SGGLHGVG 
Sbjct: 62  ITLHPDGSVEVEDNGRGIPVDVEPRTGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGSA 165
           SVVNALSS L +++ R G +++MSF  G                       +PL V G A
Sbjct: 122 SVVNALSSRLDVQVLRGGKVHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGKA 181

Query: 166 GN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------SP 216
               TGT V +     IF     F+ + LQ R R+ ++L   ++I++ D R       + 
Sbjct: 182 KRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYLIPGLRITVKDLRRRPGTPGAD 241

Query: 217 EPREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSR---------DNI 257
            P E    Y GGI  FV +                   +  + + G              
Sbjct: 242 GPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRTC 301

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKKDKRS 316
            +D+A+RW+ GY      F N I    GGTH SG  +AL +   + VE +    K     
Sbjct: 302 EVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKAFRAQVEANARRLKAGSDK 361

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE----HP 372
           V  DD   G T+VL++++ +P+F  QTKE L +S VR +V   V   L+A L        
Sbjct: 362 VEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQR 421

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            +   +++KV+     R +AR  ++  RRK  L+ +++P KLADC   D   SELF+VEG
Sbjct: 422 QQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMPAKLADCRSNDVASSELFIVEG 481

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSA G+AK  RS + QA+LP+RGKILNV++A    +L++ E   LI  +G G G+  FD+
Sbjct: 482 DSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRS-FDL 540

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKS 549
           +  RY K+++MTDADVDGAHIRTLLLT FFR M  ++  G +Y   PPL+ I    RG  
Sbjct: 541 DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVK 600

Query: 550 LQY-VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
            +  +      E +     L  E   + +           +    A              
Sbjct: 601 EREVIYTYSEQELHATLARLEREGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRV 660

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           +   +E A         S            A+ L+
Sbjct: 661 NIAEVEAAERVFDLLMGSAVAPRKDFIVSHADELD 695



 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLL 763
           +   + I       L  T+  + R+G S    +QRYKGLGEM+A QL ETT++P  R L 
Sbjct: 599 VKEREVIYTYSEQELHATLARLEREGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLR 658

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           RV I +   A+ +F  LMG  V PR++FI  ++
Sbjct: 659 RVNIAEVEAAERVFDLLMGSAVAPRKDFIVSHA 691


>gi|310781167|gb|ADP24059.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 444

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 237/446 (53%), Positives = 316/446 (70%), Gaps = 3/446 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILNV
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNV 417

Query: 461 ERARFDKMLSSQEIGTLITALGTGIG 486
           E+AR DK+LS++EI  +ITALGTG+G
Sbjct: 418 EKARLDKILSNEEIRAMITALGTGVG 443


>gi|311337325|gb|ADP89912.1| DNA gyrase subunit B [Amycolatopsis marina]
          Length = 470

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 213/473 (45%), Positives = 299/473 (63%), Gaps = 18/473 (3%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
            GLHH+I+EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP  +H +E     E+
Sbjct: 1   RGLHHLIWEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVGMHPKEKRPTLEI 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           ++T LHAGGKF+  SY VSGGLHGVGVSVVNALS  L + +  +G I+   + +      
Sbjct: 61  VLTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSRRLDVEVHTDGRIWRQQYDHSKP-GE 119

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L+  G A   TGT +TF    +IF    ++ +T+  RL+E++FLN  + I L D+R    
Sbjct: 120 LIDAGPAS-RTGTSLTFWADPEIFETTHYSVETVSRRLQEMAFLNKGLTIVLRDERPEAE 178

Query: 219 REIT---------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                                Y GG+E FV +++  K P+ +S I  +   D + +++AM
Sbjct: 179 PTEDAVDAAGKPANITERTYHYPGGLEDFVKHINGSKDPIHKSVIGFESQGDGVQVEVAM 238

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN  Y  +V  F N I   +GGTH  G R+ALTR + SY  +    K+   ++ GDD R
Sbjct: 239 QWNTQYTPSVYTFANTINTPEGGTHEEGFRAALTRVVNSYAREKKLLKEKDTNLTGDDVR 298

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ +P+F  QTK+KL +SE +S V++  N+ LS W E +P EA+ I+ K +
Sbjct: 299 EGLAAIISVKLAEPQFEGQTKQKLGNSEAKSFVQTTTNEWLSDWFERNPSEARTIINKAV 358

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+ARDL RRKG LDI  LPGKL DC    P++ EL++VEGDSAGGSAK+GR
Sbjct: 359 SSAQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGR 418

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
               QAILP+RGKI+NVE+AR DK+L + E+ +LITALGTGI  D FD+ KLR
Sbjct: 419 DSMYQAILPIRGKIINVEKARIDKVLKNNEVQSLITALGTGI-HDEFDLEKLR 470


>gi|310781129|gb|ADP24040.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 238/453 (52%), Positives = 317/453 (69%), Gaps = 3/453 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILNV
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNV 417

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           E+AR DK+LS++EI  +ITALGTG+G D     
Sbjct: 418 EKARLDKILSNEEIRAMITALGTGVGDDFDISK 450


>gi|310780899|gb|ADP23925.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 238/449 (53%), Positives = 317/449 (70%), Gaps = 3/449 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILNV
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNV 417

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDS 489
           E+AR DK+LS++EI  +ITALGTG+G D 
Sbjct: 418 EKARLDKILSNEEIRAMITALGTGVGDDF 446


>gi|113460744|ref|YP_718811.1| DNA topoisomerase IV subunit B [Haemophilus somnus 129PT]
 gi|112822787|gb|ABI24876.1| DNA topoisomerase IV subunit B [Haemophilus somnus 129PT]
          Length = 630

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 227/640 (35%), Positives = 329/640 (51%), Gaps = 12/640 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V 
Sbjct: 2   TNYSAQEITVLKDLEPVQLRPGMY---TDTSRP-NHLGQEVIDNSVDEALAGHATKIEVI 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  D S  V DNGRG+P D+H  E +S  EVI+T+LHAGGKF+ K Y+ +GGLHGVG+SV
Sbjct: 58  LYKDQSLEVIDNGRGMPVDIHPTEKVSGVEVILTKLHAGGKFSNKHYEFAGGLHGVGISV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS  + +++KR G IY+++F NG+    L + G+     TGT V F P+   F   +
Sbjct: 118 VNALSERVDIQVKRNGEIYKIAFENGVKVEELEIIGTCGKRTTGTSVHFKPNPKYFDSAN 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L+H LR  + L S ++I  IDK +                  +    +  P    
Sbjct: 178 FSVSRLRHLLRAKAVLCSGLEIKFIDKINNTEDTWLYQDGLSDYLMENVNGYNLLPQTPF 237

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 +++  S    +   +G       + N IP   GGTH++GLR  L   +  + E 
Sbjct: 238 VGDFTTNKEAASW-ALLWLPEGGELLNESYVNLIPTIQGGTHVNGLRQGLLDAMREFCEF 296

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                     +  DD  +    VLS+KM D +F+ QTKE+L S +    V   V D  S 
Sbjct: 297 RN-LLPKNVKLTADDIWDRCAYVLSVKMHDAQFAGQTKERLSSRQSAVFVGGVVKDSFSL 355

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           WL ++  +A+ + K V+ ++   +   RA     RK ++   +LPGKLADCSE+D  K+E
Sbjct: 356 WLNQNIQDAEELAKMVISSA---ERRLRAAKKVVRKKLVSGPALPGKLADCSEQDLSKTE 412

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGGSAKQ R+RE+QAILPLRGKILN      D++L SQE+  +  A+  GI 
Sbjct: 413 LFLVEGDSAGGSAKQARNREHQAILPLRGKILNTWEVSPDQVLRSQEVHDI--AIALGID 470

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +Y+  PPLY I  
Sbjct: 471 PDNEDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQQGHVYVAMPPLYRIDL 530

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           G  + Y  DE   E  L               KG+   N  +          + +     
Sbjct: 531 GNEVFYALDENEKESILARLKNKRGKLNVQRFKGLGEMNPNQLRETTMDPNTRRLVQLTY 590

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
              +  +    +  +   +   E          ++++  A
Sbjct: 591 KPHEEDVSTLELMDMLLAKKRSEDRKIWLQNNGDQVDVNA 630



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 731 RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI---TDASQADDLFSRLMGDE-V 785
           ++G +++QR+KGLGEMN +QL ETT++P+TR L+++      +     +L   L+  +  
Sbjct: 553 KRGKLNVQRFKGLGEMNPNQLRETTMDPNTRRLVQLTYKPHEEDVSTLELMDMLLAKKRS 612

Query: 786 EPRREFIQEN 795
           E R+ ++Q N
Sbjct: 613 EDRKIWLQNN 622


>gi|94983853|gb|ABF50631.1| DNA topoisomerase IV subunit B [Spiroplasma turonicum]
          Length = 554

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 229/557 (41%), Positives = 336/557 (60%), Gaps = 12/557 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDESL G    I V++  DGS T+ DNGRG+P   +K   
Sbjct: 1   GSTD-VRGLHHLVWEIVDNSIDESLAGACSEINVSIEKDGSVTIKDNGRGVPIGNYKGTK 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  E+I + LHAGGKF    YK SGGLHGVG SVVNALSS  K+ I R+  I  + F N
Sbjct: 60  QSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVTIYRDNKISTIKFAN 119

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G L  PL   G     TGT V FLP   IFS   F++ T+  RL+E + LNS ++I+L 
Sbjct: 120 GGKLTQPLKEIG-TSKQTGTIVNFLPDETIFSTVKFSFSTISERLKESALLNSGLKITLK 178

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +   +   Y+ G+  FV+ L   +K ++   I I+G+  NI +++AM + + + E
Sbjct: 179 DNRSDK--YVEYLYEDGLLEFVNELKGSQKEIISPII-IKGNNSNIDVEIAMTYTNEFSE 235

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            VL F NN+   +GGTH+ G RS L + +  Y       K+  + +   D +EG  +V++
Sbjct: 236 TVLGFANNVKTSEGGTHVIGFRSGLVKALNDYGRSQNILKERDKKLDASDVKEGLIAVVT 295

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+   ++  QTK KL ++E R+V +      +S WL+E+   A  +++K L A   +
Sbjct: 296 VKIPENLIQYEGQTKGKLGTAEARTVCDQITETSVSFWLQENKTLAISLIEKALLARRAK 355

Query: 390 DAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           + AR+AR   R +K      ++ GKL     +D +++ELFLVEGDSAGGSAK GR R  Q
Sbjct: 356 EEARKARQAVRDQKNKSKSRTMLGKLTPAQGKDKEQNELFLVEGDSAGGSAKSGRDRRFQ 415

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPL+GK++N E+ +   +L ++EI T++ A+G G+G + FD++ + Y KIIIMTDAD 
Sbjct: 416 AILPLKGKVINAEKTKLIDLLKNEEIVTIMNAIGAGVGSE-FDVSDINYGKIIIMTDADT 474

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI--TRGKSLQYVKDEESLEDYLINQ 566
           DGAHI+TLLLTFF+R M  LI N  +YI  PPL+ +     K  +Y+  E+ L  ++ N 
Sbjct: 475 DGAHIQTLLLTFFYRYMKDLILNKKVYIALPPLFKVTSPNKKDFKYLWTEDELVSHMKNT 534

Query: 567 SLSEEIELFCDSKGVIS 583
               EI+ +     + +
Sbjct: 535 KQKYEIQRYKGLGEMNA 551



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 97/298 (32%), Gaps = 13/298 (4%)

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           G+  N+ + R  K+ +S     LI  +   I ++          K+    +A      I 
Sbjct: 268 GRSQNILKERDKKLDASDVKEGLIAVVTVKIPENLIQYEGQTKGKLGT-AEARTVCDQIT 326

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
              ++F+ ++  +L  +     +          K+ Q V+D+++          S  +  
Sbjct: 327 ETSVSFWLQENKTLAISLIEKALLARRAKEEARKARQAVRDQKNKSK-------SRTMLG 379

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
                    K     F+ +        K       +  +   +   V N E  + I++  
Sbjct: 380 KLTPAQGKDKEQNELFLVEGDSAGGSAKSGRDRRFQAIL--PLKGKVINAEKTKLIDLLK 437

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
             ++   +N I       +  S  N   ++           +      F +      I +
Sbjct: 438 NEEIVTIMNAIGAGVGSEFDVSDINYGKIIIMTDADTDGAHIQTLLLTFFYRYMKDLILN 497

Query: 695 NRIEENYLTILSLI--CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
            ++      +  +      D   +     L+       ++   +QRYKGLGEMNA+QL
Sbjct: 498 KKVYIALPPLFKVTSPNKKDFKYLWTEDELVSH-MKNTKQKYEIQRYKGLGEMNATQL 554


>gi|119717182|ref|YP_924147.1| DNA topoisomerase IV subunit B [Nocardioides sp. JS614]
 gi|119537843|gb|ABL82460.1| DNA topoisomerase IV subunit B [Nocardioides sp. JS614]
          Length = 710

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 233/670 (34%), Positives = 349/670 (52%), Gaps = 46/670 (6%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             +++Y+A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN +DE+L G+A  +
Sbjct: 24  TIDNTYNAAHLLVLEGLEAVRKRPGMYIGSTD-TRGLMHCLWEIIDNGVDEALGGHASHV 82

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V D+GRGIPTD   + G+   EV+ T+LHAGGKF   SY  +GGLHGVG
Sbjct: 83  EVTLHPDGSAEVYDDGRGIPTDKEPKTGLPGVEVVATKLHAGGKFGGGSYVATGGLHGVG 142

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVVTGS--AGND 168
           +SVVNAL++ + + + R      +SF  G+      D P         L   GS  A   
Sbjct: 143 LSVVNALATRMDIDVDRSPARQGISFRRGVPGVFSGDGPQADFEARSGLTRKGSRVAKGR 202

Query: 169 TGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           +GT + F P   IF     F Y+ L  R R+ SF+   +++ + D R P+P E    + G
Sbjct: 203 SGTRIVFWPDRQIFTKDAQFVYEDLVARARQTSFIVPGLELVIRDLRGPDPVEEKFRHDG 262

Query: 228 GIEAFVSYLDRHK----------KPLMQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  +L   +                 + +   +  ++         +D+A+RW  G
Sbjct: 263 GIAEFADFLAPDEPVTDILRLQGTDTFTETVPLLDEKGQMTPQEVERELQVDVALRWGTG 322

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   +  F N I    GGTH+SG   A+TR     ++ +   K +   VI DD  EG T 
Sbjct: 323 YDTVLRSFVNVIATPKGGTHVSGFEQAVTRTFNEVMKSAKVLKVNDDDVIKDDVLEGMTC 382

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI----IVKKVLD 384
           V+++++ +P+F  QTKE L +   R+VV   V+  L  +L       K     +++KV  
Sbjct: 383 VVTVRLSEPQFEGQTKEILGTPAARTVVRRVVSAELKKFLTSTKRAEKAQAKLVMEKVAG 442

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R  AR+ ++  RRK  L+ ++LP KLADC   D  ++ELF+VEGDSA G+AK  R+
Sbjct: 443 AAKTRITARQHKETQRRKNALESSALPSKLADCRAADNDRTELFIVEGDSALGTAKLARN 502

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD++  RY +II M 
Sbjct: 503 SEFQALLPIRGKILNVQKASVGDMLKNAECASIIQVVGAGSGRT-FDLDARRYGRIIFMA 561

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDY 562
           DAD DGAHIR LL T F++ MP LI  G +Y   PPL+ +     K           +D 
Sbjct: 562 DADSDGAHIRCLLATLFYKYMPELIQEGRVYTAVPPLHRVEISNPKKGMEKYVYTYSDDE 621

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA-VISGV 621
           L  +    + +       V     L   +D     +  +   +    +  I+ A   +GV
Sbjct: 622 LQRKLAELKKKGVRWKDPVQRYKGLGE-MDADQLAETTMDPRHRTLRRITIDNAEEAAGV 680

Query: 622 FNCESDQEIN 631
           F      ++ 
Sbjct: 681 FELLMGSDVA 690



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L   +  + +KG+     +QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 611 EKYVYTYSDDELQRKLAELKKKGVRWKDPVQRYKGLGEMDADQLAETTMDPRHRTLRRIT 670

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           I +A +A  +F  LMG +V PR+EFI + +     D+
Sbjct: 671 IDNAEEAAGVFELLMGSDVAPRKEFIVQGAYEV--DV 705


>gi|315940105|gb|ADU56231.1| DNA gyrase subunit B [Nocardia gamkensis]
          Length = 491

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 217/495 (43%), Positives = 305/495 (61%), Gaps = 32/495 (6%)

Query: 27  RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86
           RP MYIG T GE GLHH+I+EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP  
Sbjct: 1   RPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATKVEVTLLADGGVEVVDDGRGIPVA 59

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H + GI   EV+MT+LHAGGKF+  SY VSGGLHGVG+SVVNALSS L+  I  +G  +
Sbjct: 60  MHAQ-GIPTIEVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSSRLEAEIDHDGYHW 118

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
             ++ + +    L + G     TGT + F    +IF    +N++T+  RL+E++FLN  +
Sbjct: 119 SQTYKDAVP-GKL-IQGEPTKKTGTTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGL 176

Query: 207 QISLIDKR----------------------------SPEPREITMFYKGGIEAFVSYLDR 238
            I L D+R                              + +  T  Y GG+E FV +++R
Sbjct: 177 TIKLTDERVSDSDVTDEVVSETAEAPKHAEEGTAPAEHKVKTRTYHYPGGLEDFVRHINR 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+P+  S +   G      +++AM+WN GY E+V  F N I   +GGTH  G R+ALT 
Sbjct: 237 TKQPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTT 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y +     K+   ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+ 
Sbjct: 297 VVNKYAKDKRLIKEKDGNLTGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQR 356

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             N+ L+ W E +P +AK IV K + ++  R AAR+AR+L RRK   D+  LPGKLADC 
Sbjct: 357 TCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCR 416

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR DK+L + E+ ++I
Sbjct: 417 SKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSII 476

Query: 479 TALGTGIGQDSFDIN 493
           TA GTGI  +     
Sbjct: 477 TAFGTGIHDEFDISK 491


>gi|307325031|ref|ZP_07604235.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
 gi|306889177|gb|EFN20159.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
          Length = 707

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 236/683 (34%), Positives = 353/683 (51%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+ D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLSHCLWEIIDNSVDEALGGFCDHIEVI 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGI--------LDNP-------LVVTGSAGNDTGTE 172
           VNALS+ L + + R+   + +SF  G+         D P       L         TGT 
Sbjct: 140 VNALSARLDVEVDRDAKTHAISFRRGVPGIFTESGPDAPFDPSSGLLKGKRVPKTRTGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKG 227
           + +     IF      + +TL  R R+ +FL   + + + D+R+ E    P E T  Y G
Sbjct: 200 IRYWADRQIFLKDAKLSLETLYARARQTAFLVPGLTLVVRDERALEGREGPVEETFRYDG 259

Query: 228 GIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  YL + K              +  + +   R +++         +D+A+RW  G
Sbjct: 260 GISEFCEYLAQDKAVCDVLRLSGHGTFKETVPVLDERGHMTPTEVTRDLGVDIALRWGTG 319

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   V  F N I    GGTH++G   A+ R +   +  +   +  +  V+ DD  EG T+
Sbjct: 320 YDATVKSFVNIIATPKGGTHVAGFERAIARTVNEALRSAKLLRVAEDDVVKDDAMEGLTA 379

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLD 384
           V+++++ +P+F  QTKE L +S    +V + V+  L  +L     +AK     +++KV+ 
Sbjct: 380 VVTVRLAEPQFEGQTKEVLGTSAASRIVANVVSKELKEFLTSPKRDAKQQARAVLEKVVA 439

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ ++  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+
Sbjct: 440 AARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVGRSELFIVEGDSALGTAKLARN 499

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI++ RY K+I + 
Sbjct: 500 SEFQALLPIRGKILNVQKSSISDMLKNVECGAIIQVIGAGSGRT-FDIDQARYGKVIFLA 558

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDGAHIR LLLT F R M  ++  G ++   PPL+ +     +    +Y+      E
Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEQGRVFSAVPPLHRVELVNPKRGQSKYIYTYSDQE 618

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                  L      + D           +    A              + + +E A  + 
Sbjct: 619 LQETLLDLQRREVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRINISDLEAAERAF 678

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                ++        +  A  L+
Sbjct: 679 DLLMGNEVAPRKEFITNSAATLD 701



 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 6/95 (6%)

Query: 712 DKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
             I       L +T+  + R+ +     +QRYKGLGEM+A QL ETT++P  R+L R+ I
Sbjct: 609 KYIYTYSDQELQETLLDLQRREVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRINI 668

Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +D   A+  F  LMG+EV PR+EFI  ++  + LD
Sbjct: 669 SDLEAAERAFDLLMGNEVAPRKEFITNSA--ATLD 701


>gi|325201661|gb|ADY97115.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M01-240149]
 gi|325208604|gb|ADZ04056.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis NZ-05/33]
          Length = 661

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/676 (32%), Positives = 335/676 (49%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVAGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|310781235|gb|ADP24093.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 452

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 235/453 (51%), Positives = 317/453 (69%), Gaps = 3/453 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++N+ Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNNSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK GR+   QAILPLRGKILNV
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNV 417

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           E+AR DK+LS++EI  +ITALGTG+G +     
Sbjct: 418 EKARLDKILSNEEIRAMITALGTGVGDEFDISK 450


>gi|117618295|ref|YP_858204.1| DNA topoisomerase IV subunit B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559702|gb|ABK36650.1| DNA topoisomerase IV, B subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 631

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/555 (37%), Positives = 305/555 (54%), Gaps = 12/555 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   STQYNADAIEVLNGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHARTLEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  D S  V D+GRG+P D+H EEG+   E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  TLYEDQSLEVIDDGRGMPVDIHPEEGVCGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y+++F  G     L +TG+ G  +TGT V F P +  F   
Sbjct: 118 VVNALSERVEVTVRRDGQVYDIAFEKGEKVQELTITGTCGRRNTGTRVRFWPEAHYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H L+  + L   + I  +DK +    E             +       P   
Sbjct: 178 RFSVSKLEHLLKAKAVLCPGLTIKFLDKNTGIKLEWCYEDGLKDYLVDAVKQFTCLPEQP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +  +   L      G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FVGAFSTEQSAVDWALCWLPEGGECLA-ESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    +LSIKM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 FRNLLPRG-VKLTPEDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSSAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L  +   A+ + +  + ++       RA     RK +    +LPGKL DC   DP + 
Sbjct: 356 LYLNSNTELAEQLAELCISSAQ---RRMRAAKTVVRKKITQGPALPGKLTDCGCADPMQG 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G   
Sbjct: 413 ELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEAGQVLASQEVHDISVAIGLDP 472

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             DS D++ LRY K+ I+ DAD DG HI TLL   F +   +L++ G +Y+  PPLY I 
Sbjct: 473 --DSDDLSGLRYGKVCILADADSDGLHIATLLCALFVKHFRALVNQGHVYVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLE 560
            GK + Y  DE+   
Sbjct: 531 IGKEVYYALDEDEKN 545



 Score = 90.8 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 5/78 (6%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD---LF 777
           +L  + +  +KG + + R+KGLGEMN  QL ETT++P+TR L+++ +   ++ D+   L 
Sbjct: 547 VLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDPNTRRLVQLTMGPEAEGDETLQLM 606

Query: 778 SRLMGDE-VEPRREFIQE 794
             L+  +    RRE+++E
Sbjct: 607 DMLLAKKRASDRREWLEE 624


>gi|119776175|ref|YP_928915.1| DNA topoisomerase IV subunit B [Shewanella amazonensis SB2B]
 gi|119768675|gb|ABM01246.1| DNA topoisomerase IV subunit B [Shewanella amazonensis SB2B]
          Length = 628

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 224/618 (36%), Positives = 330/618 (53%), Gaps = 19/618 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y++D+I++L GL+ VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TNLYNSDAIEVLNGLEPVKRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHASRIDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  D S  V D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILQTDNSLEVIDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+  +Y+M+F +G     L VTG+ G  +TGT V F P    F   
Sbjct: 118 VVNALSRRVEITVRRDAQVYDMAFEHGDKVESLTVTGTCGRRNTGTRVHFWPEPSYFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L H L+  + L   ++I   +K++ E  E     + G+  ++         L Q
Sbjct: 178 NFSITKLIHLLKAKAVLCPGLRIKFTNKQTGEVHEWYF--EAGLTDYLKSAVGDAPMLPQ 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + +N + D A+ W  +G       + N IP   GGTH++G R  L   +  + 
Sbjct: 236 EPFVGSFAGNNEAADWAITWLPEGGEYLAESYVNLIPTPLGGTHVNGFRQGLLESMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +    +LSIKM DP+F+ QTKEKL S +  + V   V D  
Sbjct: 296 EFRN-LIPRGIKLSPEDIWDKTAFILSIKMQDPQFAGQTKEKLSSRQSAAFVSGIVRDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L  H   A+++ +  +  +       +A     RK V    +LPGKL DCS +DP  
Sbjct: 355 SLYLNSHTDLAEMLAEMCISNAQ---KRMKAAKKVARKKVTAGPALPGKLTDCSGQDPMT 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN       ++L+SQE+  +  A+G  
Sbjct: 412 SELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEASQVLASQEVHDISVAIGCD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
              DS DI++LRY K+ I+ DAD DG HI TLL   F +    L+  G +YI  PPL+ I
Sbjct: 472 P--DSDDISELRYGKVCILADADSDGLHIATLLCALFLKHYRVLVERGHVYIAMPPLFRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   +       L          K  +++      ++     +  +   
Sbjct: 530 DIGKEVYYALDESEKQGI-----LDRIAAEGKKGKPQVTRFKGLGEMNPLQLRETTMDPN 584

Query: 605 YPNHDKTFIEQAVISGVF 622
                +  I+ +  +   
Sbjct: 585 TRRLVQLTIDDSDDTVAL 602



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD I + G+KG   + R+KGLGEMN  QL ETT++P+TR L+++ I D+     L   L
Sbjct: 547 ILDRIAAEGKKGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSDDTVALMDML 606

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 607 LAKKRSGD----RKTWLET 621


>gi|119713347|gb|ABL97411.1| DNA topoisomerase IV subunit B [uncultured marine bacterium
           EB80_02D08]
          Length = 631

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/636 (33%), Positives = 327/636 (51%), Gaps = 15/636 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  +SYDA +I++L GLD V+KRP MY  DT   +   H+I EVLDN++DE+L GY   I
Sbjct: 1   MAKNSYDAQAIEVLSGLDPVRKRPGMYT-DTSNPN---HLIQEVLDNSVDEALSGYCSNI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V++  DG   VSD+GRG+P D H E  +S  E+I+ +LHAG KF+   Y  SGGLHGVG
Sbjct: 57  KVSVMKDGFIKVSDDGRGMPIDEHPEHKVSGVELILCKLHAGAKFSGDDYNFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSVVNALS  L++R+KR    Y++SF NG   + L   G     ++GT + F P+   F 
Sbjct: 117 VSVVNALSDELEVRVKRSSKEYQISFNNGEKVSELEPIGDVGPRNSGTSIKFKPNPSYFE 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +     L+H L+  + L   + I  ++++  + ++    ++ G++ ++         +
Sbjct: 177 TTEIQIKKLKHLLKAKAVLCPGLTIDFVNEKKSDDKQRWY-FEDGLKTYLIESSEGADLI 235

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVL--CFTNNIPQKDGGTHLSGLRSALTRQIT 301
           +Q  I      D   ++ A+ W+    +N L   + N IP   GG+HL+G +S +   I 
Sbjct: 236 LQDSIVCSKKSDAQELEFAVNWSLRTPKNKLDETYVNLIPTAQGGSHLNGFKSGILDSIK 295

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            + +           +  DD       ++S K+ +P+F+ QTKE+L S +  S V S   
Sbjct: 296 EFCDYRN-LLPKGLKINADDVLNSAIFIISSKLQNPQFAGQTKERLDSKDHMSFVASTTK 354

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D LS WL  H  E + I +  + ++       +  ++  RK      +LPGKL+DC+ +D
Sbjct: 355 DILSIWLNTHTEEGEKIAELAIMSAQ---TRAKVSNIVERKKTFRGPALPGKLSDCNSQD 411

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
             ++ELFLVEGDSAGGSAKQ R R  QAI+PLRGKILN       +++ SQEI  L TA+
Sbjct: 412 LNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESTEIIKSQEIKNLSTAI 471

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G   G +  D++ LRY KI I+ DAD DG HI TLL   F R   SL+  G +YI  PPL
Sbjct: 472 GVLPGNN--DLSSLRYGKICILADADSDGLHIATLLCALFLRHYKSLVQEGRIYISMPPL 529

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I   K + Y  D+   ++ +      +        +           + + + +D L 
Sbjct: 530 YRIDSAKDVLYALDDNQRDEIVAEFKKKKGKPKINIQRFKGLGEMNPPQLRETV-MDPLT 588

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +        +      +  +   + +         K
Sbjct: 589 RQLVQLSISSSDNANSMMDLLLSKKNASARKEWLEK 624



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFI 792
           I++QR+KGLGEMN  QL ET ++P TR L+++ I+ +  A+ +   L+  +    R+E++
Sbjct: 563 INIQRFKGLGEMNPPQLRETVMDPLTRQLVQLSISSSDNANSMMDLLLSKKNASARKEWL 622

Query: 793 QE 794
           ++
Sbjct: 623 EK 624


>gi|290956928|ref|YP_003488110.1| GyrB-like gyrase subunit [Streptomyces scabiei 87.22]
 gi|260646454|emb|CBG69551.1| GyrB-like gyrase subunit [Streptomyces scabiei 87.22]
          Length = 706

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 235/682 (34%), Positives = 344/682 (50%), Gaps = 48/682 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIEVI 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-----DNPLVV-------TGS--AGNDTGTEV 173
           VNALS+ L + + R G+ + +SF  G+        P           G       TGT V
Sbjct: 140 VNALSARLDVEVDRNGSTHAISFRRGVPGAFAGIGPDAKFETGGLRKGKRIPKTRTGTRV 199

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGG 228
            +     IF      + + L  R R+ +FL   + I + D+          E +  + GG
Sbjct: 200 RYWADRQIFLKDAKLSLEHLHQRARQTAFLVPGLTIVVRDEFGLGEGGSKGEESFRFDGG 259

Query: 229 IEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDGY 269
           I  F  YL   K              +  + +      ++         +D+AMRW  GY
Sbjct: 260 ISEFCEYLASDKPVCDILRFSGQGTFKETVPVLDEHGQMTPTQVTRELGVDVAMRWGTGY 319

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
              +  F N I    GGTH++G   A+   +   +      +  +  ++ DD  EG T+V
Sbjct: 320 DTTLKSFVNIIATPKGGTHVAGFEQAVASTMNEVLRAKKMLRVAEDDIVKDDALEGLTAV 379

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL----EAKIIVKKVLDA 385
           +++++ +P+F  QTKE L +S  R +V   +   L A+L         +A+++++K + A
Sbjct: 380 VTVRLAEPQFEGQTKEVLGTSAARRIVAQVIAKELKAFLTSAKRDAAAQARVVMEKAVAA 439

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ +D  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R+ 
Sbjct: 440 ARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARNS 499

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KII+MTD
Sbjct: 500 EFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKIIMMTD 558

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLED 561
           ADVDG+HIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      E 
Sbjct: 559 ADVDGSHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDREL 618

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                    +   + DS          +    A              + + +E A     
Sbjct: 619 RDRLLEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINLSDLEAAEQVFD 678

Query: 622 FNCESDQEINVSLASKLANRLN 643
               +D        S  A  L+
Sbjct: 679 LLMGNDVAPRKEFISSSAATLD 700



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L D +     KG+    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 607 DKYVYTYSDRELRDRLLEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 666

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           ++D   A+ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 667 LSDLEAAEQVFDLLMGNDVAPRKEFISSSA--ATLD 700


>gi|308177804|ref|YP_003917210.1| DNA gyrase subunit B [Arthrobacter arilaitensis Re117]
 gi|307745267|emb|CBT76239.1| putative DNA gyrase subunit B [Arthrobacter arilaitensis Re117]
          Length = 702

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 236/670 (35%), Positives = 350/670 (52%), Gaps = 65/670 (9%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            + +Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I 
Sbjct: 3   SSDNYSARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGFGQAID 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L+ DGS  V D+GRGIP DL  + G+S  EV+ T+LHAGGKF   SY  SGGLHGVG 
Sbjct: 62  VILHSDGSVEVQDDGRGIPVDLEPKTGLSGLEVVFTKLHAGGKFGGGSYSASGGLHGVGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGSA 165
           SVVNALS+ L + + R G  Y + F  G                        P  + G A
Sbjct: 122 SVVNALSARLDVEVDRGGKTYGLQFRRGEPGKFTDKGRKKADAPFKAHVTATPPGIIGKA 181

Query: 166 GN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------P 216
               TGT + +   + IF     F+Y  LQ R R+ SFL   ++I+L D+R         
Sbjct: 182 KRGVTGTRIRYWADNHIFTPEAKFSYSDLQDRARQTSFLVPGLRITLRDERGLPDTPGAE 241

Query: 217 EPREITMFYKGGIEAFVS-----------YLDRHKKPLMQSPI--------RIQGSRDNI 257
            P E    + GGI  FV            +  +      +            I+  +   
Sbjct: 242 GPHEEVFQHDGGISEFVDYLSSDSPVTDIWRFQGSGSFHEKVPVIDGNGRSHIEDVQRVC 301

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS--FGSKKDKR 315
            +D+A+RW  GY  ++  F N I    GGTH +G   A+ +     VE +        K 
Sbjct: 302 EVDVALRWGIGYETSLRSFVNIIATPKGGTHTAGFEQAMLKSFRKNVEANARKLKFGQKD 361

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            +  DD   G T+VL++++ +P+F  QTKE L + +VR +V   +   L+  L  +    
Sbjct: 362 KLEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTPQVRQIVSKVLEKALNERLGSNKRNE 421

Query: 376 KI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           K     +++KV++    R +AR  ++  RRK  L+ +SLP KL DC  ++  KSELF+VE
Sbjct: 422 KAEASTLMEKVVNEMKSRVSARMHKETQRRKTALESSSLPTKLLDCRSKEVGKSELFIVE 481

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSA G+A+  RS E+QA+LP+RGKILNV++A    MLS+ E   +I  +G G G+  FD
Sbjct: 482 GDSALGTARLARSSEHQALLPIRGKILNVQKASISDMLSNAECAAMIQVIGAGSGRS-FD 540

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           I + RY KII+MTDADVDGAHIRTLLLT F+R M  +I +G +Y   PPL+ I     + 
Sbjct: 541 IEQARYGKIILMTDADVDGAHIRTLLLTLFYRYMRPMIEHGRVYAAVPPLHRI----EVI 596

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF-----IDDALKIDKLIKDFYP 606
               +++   Y  +++   ++    + +G   K  ++ +     +D     +  +   + 
Sbjct: 597 NAGSKQNEVIYTYSEAEMTKLLATLEKEGRRYKEPIQRYKGLGEMDADQLAETTMDPRHR 656

Query: 607 NHDKTFIEQA 616
              +  IE A
Sbjct: 657 MLRRVGIEHA 666



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 722 LLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           LL T+   GR+    +QRYKGLGEM+A QL ETT++P  R L RV I  A  A+++F  L
Sbjct: 617 LLATLEKEGRRYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRVGIEHAQAAEEVFDLL 676

Query: 781 MGDEVEPRREFIQENS 796
           MG +V PR++FI + +
Sbjct: 677 MGSDVAPRKKFIIDGA 692


>gi|90407086|ref|ZP_01215275.1| DNA topoisomerase IV subunit B [Psychromonas sp. CNPT3]
 gi|90311808|gb|EAS39904.1| DNA topoisomerase IV subunit B [Psychromonas sp. CNPT3]
          Length = 629

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 204/645 (31%), Positives = 319/645 (49%), Gaps = 22/645 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+      Y++DSI++L GLD V+ RP MY   T+     +H+  EV+DN++DE+L G+
Sbjct: 1   MSEQ-----YNSDSIEVLNGLDPVRHRPGMY---TETNRP-NHLAQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V+D+GRG+P D+H EE IS  E+I  +LHAGGKF+ K+Y +SGGL
Sbjct: 52  ATSIQVILHEDQSIEVTDDGRGMPVDIHPEEKISGVELIFCKLHAGGKFSGKNYAISGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ + + I+R   +Y ++F +G     L    +    +TGT V F P  
Sbjct: 112 HGVGISVVNALSARVDVNIRRNAKVYHIAFEHGEKVEELKEIDTCGKRNTGTSVHFRPDP 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLD 237
             F    F+   L H L+  + L   + I   D+ +               +   V   +
Sbjct: 172 RYFDSAKFSVSRLLHLLKAKAVLCPGLSIKFKDRVNKNNYHWCYKDGLNDYLLEAVHENE 231

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
                     +   G   + +I   +   +G +     + N IP   GGTH++G R  L 
Sbjct: 232 LLPATPFVGQLMANGETVDWAI---VWLPEGGNSLSESYVNLIPTIQGGTHVNGFRQGLL 288

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  + +      +    +  +D  +    +LS+K+ +P+F+ Q KE+L S +  + + 
Sbjct: 289 DAMREFCDIRSLLPRG-IKLSPEDIWDKCAYILSVKIKEPQFAGQMKERLSSRQCVAFIC 347

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D  S WL  H  EA+ +    +  + +R    +      RK +    +LPGKL DC
Sbjct: 348 GVVKDAFSLWLNAHVGEAEELALFCIQNAQIRSRKSKK---VARKKITQGPALPGKLTDC 404

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S ++P++ ELFLVEGDSAGGSAKQ R RE QAILPLRGKI N      D +L+S+EI  +
Sbjct: 405 SCQEPERGELFLVEGDSAGGSAKQARDREFQAILPLRGKIKNTWEDDSDVILNSEEIYNI 464

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
             ++  GI   S D++ LRY KI I+ DAD DG HI TL+   F R   +++  G  Y+ 
Sbjct: 465 --SIAIGIDPASNDLSGLRYGKICILADADSDGLHIATLICALFVRHFRAVVDAGHFYVA 522

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
            PPLY I  GK + Y  D E  ++ ++ +  ++      + +      ++         +
Sbjct: 523 MPPLYRIDAGKEVFYALD-EGEKEIILERIANKNKRSKINVQRFKGLGEMNPDQLRETTM 581

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           D   +       +   +   +  +   +              + L
Sbjct: 582 DPNTRRLVQLTTEDSEKMLEVMDMLLAKKRAGDRKEWLETSGDML 626



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 17/105 (16%)

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETT 754
           RI+       +L     +I       +L+ I +  ++  I++QR+KGLGEMN  QL ETT
Sbjct: 528 RIDAGKEVFYALDEGEKEI-------ILERIANKNKRSKINVQRFKGLGEMNPDQLRETT 580

Query: 755 LNPDTRSLLRVKITDASQADDLFSRLM-----GDEVEPRREFIQE 794
           ++P+TR L+++   D+ +  ++   L+     GD    R+E+++ 
Sbjct: 581 MDPNTRRLVQLTTEDSEKMLEVMDMLLAKKRAGD----RKEWLET 621


>gi|29828984|ref|NP_823618.1| DNA topoisomerase IV subunit B [Streptomyces avermitilis MA-4680]
 gi|29606089|dbj|BAC70153.1| putative a subunit of topoisomerase IV [Streptomyces avermitilis
           MA-4680]
          Length = 707

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 238/683 (34%), Positives = 347/683 (50%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIDVI 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL--------------DNPLVVTGSAGN-DTGTE 172
           VNALS+ L + + R G+ + +SF  G+                  L          TGT 
Sbjct: 140 VNALSARLDVEVDRSGHTHAISFRRGVPGAFATVGPDAKFDATAGLRKAKKIPRTRTGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V +     IF      + + L  R R+ +FL   + I + D+          E +  + G
Sbjct: 200 VRYWADRQIFLKDAKLSLENLHQRARQTAFLVPGLTIVVRDEYGLGEGGSKGEESFRFDG 259

Query: 228 GIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  YL   K              +  + +      ++         +D+AMRW  G
Sbjct: 260 GISEFCEYLATDKPVCDVLRFSGQGTFKETVPVLDDHGQMTPTEVTRELGVDVAMRWGTG 319

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   +  F N I    GGTH++G   A+T+ +   +      +  +  V+ DD  EG T 
Sbjct: 320 YDTTLKSFVNIIATPKGGTHVAGFEQAVTKTVNEVLRAKKLLRVAEDDVVKDDALEGLTV 379

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL----EAKIIVKKVLD 384
           V+++++ +P+F  QTKE L +S  R +V + V+  L A+L         +A+++++K + 
Sbjct: 380 VVTVRLAEPQFEGQTKEVLGTSAARRIVTNVVSKELKAFLTSTKRDAAAQARVVLEKAVA 439

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R+
Sbjct: 440 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARN 499

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV++A    ML + E G +I  +G G G+  FDI+  RY KII++ 
Sbjct: 500 SEFQALLPIRGKILNVQKASVTDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKIILLV 558

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      E
Sbjct: 559 DADVDGAHIRILLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDRE 618

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                  L  +   + DS          +    A              + + +E +    
Sbjct: 619 LRETLLELQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINISDLEASEQVF 678

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                +D        S  A  L+
Sbjct: 679 DLLMGNDVAPRKEFISSSAATLD 701



 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L +T+  + RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 608 DKYVYTYSDRELRETLLELQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 667

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I+D   ++ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 668 ISDLEASEQVFDLLMGNDVAPRKEFISSSA--ATLD 701


>gi|326329136|ref|ZP_08195464.1| DNA gyrase, B subunit [Nocardioidaceae bacterium Broad-1]
 gi|325953023|gb|EGD45035.1| DNA gyrase, B subunit [Nocardioidaceae bacterium Broad-1]
          Length = 687

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 270/647 (41%), Positives = 383/647 (59%), Gaps = 46/647 (7%)

Query: 1   MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M D+      +YDA +IQ+L+GL+AV+KRP MYIG T G  GLHH+I+E++DNA+DE+L 
Sbjct: 1   MPDDQTADGVAYDASAIQVLEGLEAVRKRPGMYIGST-GARGLHHLIWEIVDNAVDEALA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I VTL  DG  +V+DNGRGIPTD    + I AA + +T LHAGGKF    YKVSG
Sbjct: 60  GYCDTIKVTLREDGWVSVADNGRGIPTDTAAGQEIPAATLALTVLHAGGKFGGGGYKVSG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFL 176
           GLHGVG SVVNALS+ L + IK  G ++E  F  G+ D  L        G  TGT +++ 
Sbjct: 120 GLHGVGSSVVNALSTNLHMEIKNRGRLWEQEFTRGVPDYDLREVRELEEGERTGTTISWN 179

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------------- 215
            S++IF   D+N +T+    RE +FLN  ++I L D+R                      
Sbjct: 180 ASAEIFESTDYNLETISSHFRETAFLNKGLRIELRDERPQASAIAEAVEDGTIESDTDSA 239

Query: 216 ---------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDL 261
                        E + +Y+ G+  +V +L++ K P+  S I  +        + +S+++
Sbjct: 240 DELHGTGNGERVLEQSFYYERGLADYVDHLNKRKTPV-SSIIAFEAETDDKAPNPMSVEI 298

Query: 262 AMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           AM+W    Y+E+V  F N +    GGTH  G R+ALT  I  + E+    KK +  + GD
Sbjct: 299 AMQWQASSYNESVHTFANTVNTPGGGTHEEGFRAALTTLINRWGEEWGLIKKKEDRLTGD 358

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG T+++S+K+ +P+F  QTK+KL ++EV+  V+  VND L AWLE++P E K +++
Sbjct: 359 DIREGLTAIISVKISEPQFEGQTKDKLGNTEVKGFVQGAVNDQLGAWLEQNPAEGKEVIR 418

Query: 381 KVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           K + A+  R AAR+ARD    RKG+     LPGKLADC   +P++ E+F+VEGDSAGGSA
Sbjct: 419 KSMAAASARIAARKARDLARNRKGIGGGGGLPGKLADCQSTNPEECEIFIVEGDSAGGSA 478

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           K GR    QAILP+RGKILNVE+AR DK+L++QE+ ++I+ALGTG+  D FDIN+LRYHK
Sbjct: 479 KSGRDPRIQAILPIRGKILNVEKARIDKVLANQEVQSIISALGTGV-HDDFDINRLRYHK 537

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY--GITRGKSLQYVKDEE 557
           I++M DADVDG HI TLLLT  FR M  LI  G++Y+ +PPLY     +    ++V  + 
Sbjct: 538 IVMMADADVDGHHINTLLLTLLFRFMKPLIEQGYVYLAQPPLYRLRWNKPAEHEFVYSDA 597

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             +  + +     +     +           N  +         +  
Sbjct: 598 ERDALMRDGLEQGKKLPKENPVQRYKGLGEMNADELWETTMDPSQRL 644



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMNA +LWETT++P  R LL+V + DA+ AD++FS LMG++V  RR FIQ N
Sbjct: 619 VQRYKGLGEMNADELWETTMDPSQRLLLQVTLEDAAHADEIFSILMGEDVAERRSFIQRN 678

Query: 796 SLPSA-LDI 803
           +     LDI
Sbjct: 679 AKDVRFLDI 687


>gi|333024005|ref|ZP_08452069.1| putative DNA topoisomerase IV subunit B [Streptomyces sp. Tu6071]
 gi|332743857|gb|EGJ74298.1| putative DNA topoisomerase IV subunit B [Streptomyces sp. Tu6071]
          Length = 701

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 239/684 (34%), Positives = 348/684 (50%), Gaps = 49/684 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V
Sbjct: 14  DSNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIDV 72

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG S
Sbjct: 73  TLHEDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGAS 132

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVVTGS-AGNDTGT 171
           VVNALS+ L + + R G+++  SF  G+                  L  T       TGT
Sbjct: 133 VVNALSARLDVEVDRGGSVHTTSFRRGVPGQFKGAGPEGAFEPTTGLRKTKRIPKTRTGT 192

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYK 226
            V +     IF      + +TL  R R+ +FL   + + + D+          E +  Y 
Sbjct: 193 RVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTLVVHDEYGLGEGGSKGEESFRYD 252

Query: 227 GGIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWND 267
           GGI  F  YL R K              +  + +      ++         +D+A+RW  
Sbjct: 253 GGISEFCEYLARDKAVCDVLRLSGQGTFKETVPVLDEYGQMTPTEVVRDLGVDVALRWGT 312

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY  +V  F N I    GGTH++G   A+TR +   +  +   +  +  V+ DD  EG T
Sbjct: 313 GYETSVRSFVNIIATPKGGTHVAGFERAVTRTVNDVLRSAKLLRVAEDDVVKDDALEGLT 372

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVL 383
           +V+++++ +P+F  QTKE L +S    +V + V   L A+L     +AK     ++ KV+
Sbjct: 373 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKVV 432

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            A+  R AAR+ ++  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R
Sbjct: 433 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 492

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           + E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FD++  RY KII++
Sbjct: 493 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDLDAARYGKIILL 551

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESL 559
            DADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      
Sbjct: 552 VDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDR 611

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           E          E   + DS          +    A                  ++ A   
Sbjct: 612 ELRETLLDFERENVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRISMNDLDSAEQV 671

Query: 620 GVFNCESDQEINVSLASKLANRLN 643
                 ++        +  A  L+
Sbjct: 672 FDLLMGNEVAPRKEFITNSAATLD 695



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L +T+    R+ +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 602 DKYVYTYSDRELRETLLDFERENVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIS 661

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           + D   A+ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 662 MNDLDSAEQVFDLLMGNEVAPRKEFITNSA--ATLD 695


>gi|300114694|ref|YP_003761269.1| DNA topoisomerase IV subunit B [Nitrosococcus watsonii C-113]
 gi|299540631|gb|ADJ28948.1| DNA topoisomerase IV, B subunit [Nitrosococcus watsonii C-113]
          Length = 628

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 224/589 (38%), Positives = 314/589 (53%), Gaps = 18/589 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + +Y+A +I++L GLD V+KRP MY   TD +   +H+  EV+DN++DE++ G+A  I V
Sbjct: 2   SGNYNAAAIEVLTGLDPVRKRPGMY---TDTQRP-NHLAQEVIDNSVDEAIAGFATHIDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DGS TV D+GRG+P DLH EE +   EVI++RLHAGGKF+ KSY+ +GGLHGVGVS
Sbjct: 58  VLQSDGSLTVRDDGRGMPVDLHPEERLPGIEVILSRLHAGGKFSSKSYRFAGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS L++ ++R+   Y ++F NG   + L          TGT + F P    F   
Sbjct: 118 VVNALSSRLEVWVRRDSCEYHIAFANGERVSALRAINKVGKRSTGTVLRFWPDPAFFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L   +Q++  D  + E        + G+ A++         L  
Sbjct: 178 KFSVARLKHILRAKAVLCPGLQVTFSDVVTGEAANWRY--QEGLLAYLRDELGALSYLPD 235

Query: 246 SPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +   +   +  A  W  +G       + N IP   GGTH++GLR  +   +  + 
Sbjct: 236 PPFTGEMQGNTEEVCWAFTWLPEGGEVVAESYVNLIPTPQGGTHVNGLRGGVLEAVREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  DD  E  + VLS+K+ DP+FS QTKE+L S E  S V   V D  
Sbjct: 296 EFRN-LLPKGVKLAPDDVWERVSYVLSVKLLDPQFSGQTKERLSSRECASFVAGVVKDSF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL +H    + I +  +D +  R    +      RK +    +LPGKLADC+ ++   
Sbjct: 355 SLWLNQHVAIGEAIAELAIDNAQRRLRQAKK---VVRKRIQAGPALPGKLADCTSQEVSL 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQGR RE QAI+PLRGKILN       ++L+SQE+  +  ALG  
Sbjct: 412 TELFLVEGDSAGGSAKQGRDREFQAIMPLRGKILNTWEIDSAQVLASQEVHNIAVALGVD 471

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
            G D   ++ LRY KI I+ DAD DGAHI  LL   F R    L+  G +Y+  PPLY I
Sbjct: 472 PGSD--KLDSLRYGKICILADADSDGAHIAALLSALFLRHFRPLVEAGHIYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             GK + Y  D        +     +   +         G ++   LR 
Sbjct: 530 DVGKRVFYALDGAERQGVLDRIAAEKIKGKINIQRFKGLGEMNPMQLRE 578



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 3/51 (5%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLR--VKITD 769
           +LD I +   KG I++QR+KGLGEMN  QL ETT+ P+TR L+R  V   D
Sbjct: 547 VLDRIAAEKIKGKINIQRFKGLGEMNPMQLRETTMAPETRRLVRLTVTPED 597


>gi|261868257|ref|YP_003256179.1| DNA topoisomerase IV subunit B [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413589|gb|ACX82960.1| DNA topoisomerase IV, B subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 632

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 231/648 (35%), Positives = 333/648 (51%), Gaps = 24/648 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A+ I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSANEITVLKDLEPVQLRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRG+P D+H  E +S  EVIM++LHAGGKF+ K+Y  SGGLHGVG+S
Sbjct: 58  ILHKDQSIEVIDNGRGMPVDIHPVEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + + +KR G IY+++F NG     L V        TGT V F P+   F  +
Sbjct: 118 VVNALSERVDVTVKRNGEIYKIAFENGKKVEDLTVIGTCGRRTTGTTVHFKPNPKYFDSE 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH--KKPL 243
            F+   L+H LR  + L S ++I  ID  +      T  Y+GG+  ++          P 
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDNVNDTE--DTWLYQGGLNDYLMEAVNGLVTLPE 235

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                   G ++ +S    +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 236 QPFIGEFNGEKEAVSW-ALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGLLDAMREF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +    +   V D 
Sbjct: 295 CEFRNLLPRG-VKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAVFIGGVVKDA 353

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  +A+++    + ++       RA     RK ++   +LPGKLADCS +D  
Sbjct: 354 FSLWLNQNIQQAELLADMAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCSSQDIN 410

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      +++L+SQE+  +  A+  
Sbjct: 411 FTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPEQVLASQEVHDI--AVAL 468

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +Y+  PPLY 
Sbjct: 469 GIDPDNSDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVELGHVYVAMPPLYR 528

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DE   E  L      +        KG+   N ++         +  +  
Sbjct: 529 IDLGKDVFYALDESEKEAILDRLKGKKCKPNVQRFKGLGEMNPMQLR-------ETTMDP 581

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAEKSE 650
                 +   E          E+    +    A    N L    ++ +
Sbjct: 582 NTRRLVQLTFEAQSEEKRETIETMDMLLAKKRAEDRKNWLQAKGDQVD 629



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 27/34 (79%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
           ++QR+KGLGEMN  QL ETT++P+TR L+++   
Sbjct: 559 NVQRFKGLGEMNPMQLRETTMDPNTRRLVQLTFE 592


>gi|325136669|gb|EGC59269.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M0579]
          Length = 661

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/676 (32%), Positives = 335/676 (49%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   P+      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVAGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|332290088|ref|YP_004420940.1| DNA topoisomerase IV subunit B [Gallibacterium anatis UMN179]
 gi|330432984|gb|AEC18043.1| DNA topoisomerase IV subunit B [Gallibacterium anatis UMN179]
          Length = 636

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 238/652 (36%), Positives = 344/652 (52%), Gaps = 21/652 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+NI    Y+A+ I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L GY
Sbjct: 1   MSENI----YNANDITVLKDLEPVQLRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGY 52

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L  D S  V DNGRG+P D+H  E IS  E+I+T+LHAGGKF+ K+Y+ +GGL
Sbjct: 53  ATKIEVILYQDQSLEVIDNGRGMPVDIHPVEKISGIELILTKLHAGGKFSNKNYQFAGGL 112

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSS 179
           HGVG+SVVNALS+ + + +KR G IY ++F +G     L V G+ G   TGT V F P++
Sbjct: 113 HGVGISVVNALSARVDVSVKRNGEIYHIAFADGKKIEELEVVGTCGRRTTGTAVRFWPNA 172

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F +  F+   L+H LR  + L   ++I  IDK +         Y+ G+  ++      
Sbjct: 173 KYFDLAKFSVSRLRHLLRAKAVLCPGLEIKFIDKVNQTE--ERWCYQDGLSDYLLEAVDG 230

Query: 240 KKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              L + P   +   D  +++ A     +G +     + N IP   GGTH++GLR  L  
Sbjct: 231 VVTLPEQPFIGEFKSDTEAVNWALFWLPEGGNIIGESYVNLIPTPLGGTHVNGLRQGLLD 290

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  + E      +    +  DD  E    +LS+KM DP+F+ QTKE+L S +    V  
Sbjct: 291 AMREFCEFRNLLPRG-VKLTADDIWERCAYILSLKMQDPQFAGQTKERLSSRQSAVFVSG 349

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V D  S WL ++  +A+ + +  + ++  R  + +      RK ++   +LPGKLADC+
Sbjct: 350 VVKDSFSLWLNQNIQQAEQLAEMAIASAQRRLRSAKK---VVRKKLVSGPALPGKLADCT 406

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ++D  ++ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L SQEI  + 
Sbjct: 407 QQDLSRTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVAGDQVLGSQEIHDI- 465

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            A+  GI  D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +Y+  
Sbjct: 466 -AVALGIDPDTDDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEEGHVYVAM 524

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY I  GK + Y  DE   E  L      +        KG+   N L+        +D
Sbjct: 525 PPLYRIDLGKEVHYALDENEKEAILERLKSKKGKINVQRFKGLGEMNPLQ---LRETTMD 581

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
              +       +        +       D  +    A    N L    + +E
Sbjct: 582 PNTRRLVQLVYQPNQGSDDEADHTLEMLDMLLAKKRADDRKNWLQEKGDHAE 633



 Score = 90.8 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 25/96 (26%)

Query: 724 DTIFS--IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI------TDASQAD 774
           + I      +KG I++QR+KGLGEMN  QL ETT++P+TR L+++         D  +AD
Sbjct: 546 EAILERLKSKKGKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLVYQPNQGSDD--EAD 603

Query: 775 DLFSRL-M------GDEVEPRREFIQE---NS-LPS 799
                L M       D+   R+ ++QE   ++ L  
Sbjct: 604 HTLEMLDMLLAKKRADD---RKNWLQEKGDHAELNV 636


>gi|34396100|gb|AAQ65247.1| DNA gyrase subunit B [Entomoplasma melaleucae]
          Length = 536

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 228/529 (43%), Positives = 336/529 (63%), Gaps = 9/529 (1%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHHMI+E+LDN++DE+L G+ + I++ +       + DNGRGIP D+H + G +  E I
Sbjct: 2   GLHHMIWEILDNSVDEALAGFCNEISIFITEKNEIIIQDNGRGIPVDIHPKTGKTTLETI 61

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD-NP 158
              LHAGGKF++ +YKVSGGLHGVG SVVNALS +++  I R+  IY   F  G      
Sbjct: 62  FNVLHAGGKFDESTYKVSGGLHGVGASVVNALSLYVEAIILRDEKIYHQKFSEGGTKATK 121

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           +   G   +  G+ + F P  +IF     F++  +Q ++++L+FLN  ++++L D+R+ +
Sbjct: 122 IKEIG-ISDSNGSIIKFKPDPEIFKETIEFDFKVIQGKIKQLAFLNKKLKLNLYDQRTDK 180

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                   + GI+ ++  ++  K+ +      I  S ++I +++++++N+ Y ENV  F 
Sbjct: 181 FISYIF--EDGIKDYIKEINSGKEKVHDEIFYISNSSNDIEVEISIQYNETYDENVFSFC 238

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNI   +GG+H  G +S+L + I SYV  S   K +K     DD +EG  SV+SIK  DP
Sbjct: 239 NNIFTSEGGSHEEGFKSSLIKSINSYVNNSKSFKGNK--FTWDDLKEGIVSVISIKHRDP 296

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
            +  QTK KL +++ +  V   +N+    +L ++P +AK I++K+L +   R AA+RAR+
Sbjct: 297 LYEGQTKAKLSNNDAKEAVSEVLNESFKDFLLKNPNDAKKIIEKILISQKARKAAQRARE 356

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
            TRRK  +D  SLPGKLADC  +D ++ EL+LVEGDSAGGSAK GR+R  QAIL LRGK+
Sbjct: 357 DTRRKSAIDNFSLPGKLADCESKDIEECELYLVEGDSAGGSAKTGRNRRTQAILSLRGKV 416

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVE+ +  K+  + EI ++I A+G G+ +D  ++ KLRY KIIIMTDADVDGAHIR LL
Sbjct: 417 LNVEKVKQSKVFDNNEIQSIIAAVGIGVKKDI-NLKKLRYGKIIIMTDADVDGAHIRVLL 475

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLIN 565
           LTFF+R M  LI NG +YI +PPLY I  GK+   Y  ++  LE     
Sbjct: 476 LTFFYRYMKELILNGNVYIAQPPLYKIDAGKNNMDYAYNDMELEQLKEE 524


>gi|94471630|gb|ABF21081.1| DNA gyrase subunit B [Spiroplasma culicicola]
          Length = 606

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 229/561 (40%), Positives = 346/561 (61%), Gaps = 11/561 (1%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G+T+  +GLHHMI+E+LDNA+DESL G+ D IT+ +  +    + DNGRGIP DLH +  
Sbjct: 1   GNTNK-NGLHHMIWEILDNAVDESLAGFCDEITIIMTEENEIIIKDNGRGIPVDLHPKTN 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  E I T LHAGGKF++ +YK+SGGLHGVG SVVNALS +++  I R+  +Y   F +
Sbjct: 60  KSTLETIFTVLHAGGKFDESTYKISGGLHGVGASVVNALSLYVEAIISRDNVLYHQKFYD 119

Query: 153 GILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISL 210
           G      L   G   + TG+ + F P  +IF     F++  +Q ++++L+FLN  ++I L
Sbjct: 120 GGTKATELKEIG-ISDSTGSIIKFKPDPEIFKETIEFDFKVVQTKIKQLAFLNKGLKIEL 178

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            D+++ +          GI+ ++  ++  K+ + +    I  + + I +++++++ND Y 
Sbjct: 179 YDQKNDKFLSYRF--DDGIKDYIKEINSGKEKINEEIFYINDTYEKIEVEVSVQYNDTYD 236

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN+  F NNI   +GG+H  G ++++ R + +Y  +    K +K     +D +EG  +V+
Sbjct: 237 ENIFSFCNNIFTSEGGSHEDGFKTSILRSLNTYTNELKNFKGNKFVF--EDIKEGMCAVI 294

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SIK  DP +  QTK KL + + +  V + V +    +L ++P +AK I+ K+L +   R 
Sbjct: 295 SIKHVDPLYEGQTKAKLSNPDAKDAVNNIVFESFKEFLLKNPNDAKKIIDKILISQKARK 354

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR+ TRRK  +D  SLPGKLADC  +D  +SE++LVEGDSAGGSAK GR+R+ QAI
Sbjct: 355 AAQRAREDTRRKSAIDNFSLPGKLADCESKDANESEIYLVEGDSAGGSAKTGRNRKTQAI 414

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           L L+GK+LNVE+ +  K+  + EI ++I A+GTG+ ++ F+I K+RY KIIIMTDADVDG
Sbjct: 415 LSLKGKVLNVEKVKQSKVFENNEIQSIIAAIGTGV-KNDFNIAKIRYKKIIIMTDADVDG 473

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-GKSLQYVKDEESLEDYLINQSLS 569
           AHIR LLLTFF+R M  LI NG +YI +PPLY I      + Y   ++ LE     +   
Sbjct: 474 AHIRVLLLTFFYRYMKELILNGNIYIAQPPLYKIDAGKNKVDYAYSDQELEKLKNEKYKD 533

Query: 570 EE-IELFCDSKGVISKNDLRN 589
            + I       G +    L  
Sbjct: 534 TKYIIQRYKGLGEMDPIQLWE 554



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 3/186 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  ++  V   +++ + +  I    +  ++ +      ++      V    +    
Sbjct: 421 VLNVEKVKQSKVFENNEIQSIIAAIGTGVKNDFNIAKIRYKKIIIMTDADVDGAHIRVLL 480

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738
             F +    + I +  I      +  +    +K+        L+ + +   K     +QR
Sbjct: 481 LTFFYRYMKELILNGNIYIAQPPLYKIDAGKNKVDYAYSDQELEKLKNEKYKDTKYIIQR 540

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEM+  QLWETT++P  R++L++K+ DA  A+++FS LMG+  E RR FI EN+  
Sbjct: 541 YKGLGEMDPIQLWETTMDPTRRTMLQIKVEDAFMANEVFSSLMGESAELRRNFITENAQF 600

Query: 799 S-ALDI 803
              +DI
Sbjct: 601 VENIDI 606


>gi|15677530|ref|NP_274686.1| DNA topoisomerase IV subunit B [Neisseria meningitidis MC58]
 gi|7226935|gb|AAF42030.1| topoisomerase IV subunit B [Neisseria meningitidis MC58]
 gi|316984829|gb|EFV63786.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis H44/76]
 gi|325140855|gb|EGC63365.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis CU385]
 gi|325199724|gb|ADY95179.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis H44/76]
          Length = 661

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/676 (32%), Positives = 336/676 (49%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNASDEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+S  E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVHDNGRGIPVGLHPEEGVSVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|319638655|ref|ZP_07993415.1| topoisomerase IV subunit B [Neisseria mucosa C102]
 gi|317400039|gb|EFV80700.1| topoisomerase IV subunit B [Neisseria mucosa C102]
          Length = 661

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 221/676 (32%), Positives = 339/676 (50%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVQIHEDGSLSVRDNGRGIPIGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFSGGDVIEPLTEVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   P+      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFSKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLIADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEKEGD 655



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR ++++    + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEKEGDTAELDI 661


>gi|261378873|ref|ZP_05983446.1| DNA topoisomerase IV, B subunit [Neisseria cinerea ATCC 14685]
 gi|269144688|gb|EEZ71106.1| DNA topoisomerase IV, B subunit [Neisseria cinerea ATCC 14685]
          Length = 661

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/598 (35%), Positives = 318/598 (53%), Gaps = 31/598 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH  EG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVQIHEDGSLSVRDNGRGIPVGLHPVEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLTEVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSISELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFSKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I      +GV
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSILERLQKEGV 584



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFIKLMGKGEAAARRAWMEREGDTAQLDI 661


>gi|325204644|gb|ADZ00098.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M01-240355]
          Length = 661

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 221/676 (32%), Positives = 338/676 (50%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +   ++ + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---NKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K   +       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGFKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQILEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  113 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGFKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQILEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|302522323|ref|ZP_07274665.1| DNA gyrase, B subunit [Streptomyces sp. SPB78]
 gi|302431218|gb|EFL03034.1| DNA gyrase, B subunit [Streptomyces sp. SPB78]
          Length = 707

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 237/684 (34%), Positives = 348/684 (50%), Gaps = 49/684 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V
Sbjct: 20  DSNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIDV 78

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG S
Sbjct: 79  TLHEDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGAS 138

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVVTGS-AGNDTGT 171
           VVNALS+ L + + R G+++  SF  G+                  L  T       TGT
Sbjct: 139 VVNALSARLDVEVDRGGSVHTTSFRRGVPGQFKGAGPEGAFEPTTGLRKTKRIPKTRTGT 198

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYK 226
            V +     IF      + +TL  R R+ +FL   + + + D+          E +  Y 
Sbjct: 199 RVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTLVVRDEYGLGEGGSKGEESFRYD 258

Query: 227 GGIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWND 267
           GGI  F  YL R K              +  + +      ++         +D+A+RW  
Sbjct: 259 GGISEFCEYLARDKAVCDVLRLSGQGTFKETVPVLDEYGQMTPTEVVRDLGVDVALRWGT 318

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY  +V  F N I    GGTH++G   A+TR +   +  +   +  +  V+ DD  EG T
Sbjct: 319 GYETSVRSFVNIIATPKGGTHVAGFERAVTRTVNDVLRSAKLLRVAEDDVVKDDALEGLT 378

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVL 383
           +V+++++ +P+F  QTKE L +S    +V + V   L A+L     +AK     ++ K++
Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKIV 438

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            A+  R AAR+ ++  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R
Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           + E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FD++  RY KII++
Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDLDAARYGKIILL 557

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESL 559
            DADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      
Sbjct: 558 VDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDR 617

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           E          +   + DS          +    A                  ++ A   
Sbjct: 618 ELRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRISMNDLDSAEQV 677

Query: 620 GVFNCESDQEINVSLASKLANRLN 643
                 ++        +  A  L+
Sbjct: 678 FDLLMGNEVAPRKEFITNSAATLD 701



 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L +T+    RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 608 DKYVYTYSDRELRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIS 667

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           + D   A+ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 668 MNDLDSAEQVFDLLMGNEVAPRKEFITNSA--ATLD 701


>gi|318059563|ref|ZP_07978286.1| DNA topoisomerase IV subunit B [Streptomyces sp. SA3_actG]
 gi|318075444|ref|ZP_07982776.1| DNA topoisomerase IV subunit B [Streptomyces sp. SA3_actF]
          Length = 707

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 238/684 (34%), Positives = 348/684 (50%), Gaps = 49/684 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V
Sbjct: 20  DSNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIDV 78

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG S
Sbjct: 79  TLHEDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGAS 138

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVVTGS-AGNDTGT 171
           VVNALS+ L + + R G+++  SF  G+                  L  T       TGT
Sbjct: 139 VVNALSARLDVEVDRGGSVHTTSFRRGVPGQFKGAGPEGAFEPTTGLRKTKRIPKTRTGT 198

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYK 226
            V +     IF      + +TL  R R+ +FL   + + + D+          E +  Y 
Sbjct: 199 RVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTLVVHDEYGLGEGGSKGEESFRYD 258

Query: 227 GGIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWND 267
           GGI  F  YL R K              +  + +      ++         +D+A+RW  
Sbjct: 259 GGISEFCEYLARDKAVCDVLRLSGQGTFKETVPVLDEYGQMTPTEVVRDLGVDVALRWGT 318

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY  +V  F N I    GGTH++G   A+TR +   +  +   +  +  V+ DD  EG T
Sbjct: 319 GYETSVRSFVNIIATPKGGTHVAGFERAVTRTVNDVLRSAKLLRVAEDDVVKDDALEGLT 378

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVL 383
           +V+++++ +P+F  QTKE L +S    +V + V   L A+L     +AK     ++ KV+
Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKVV 438

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            A+  R AAR+ ++  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R
Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           + E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FD++  RY KII++
Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDLDAARYGKIILL 557

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESL 559
            DADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      
Sbjct: 558 VDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDR 617

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           E          +   + DS          +    A                  ++ A   
Sbjct: 618 ELRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRISMNDLDSAEQV 677

Query: 620 GVFNCESDQEINVSLASKLANRLN 643
                 ++        +  A  L+
Sbjct: 678 FDLLMGNEVAPRKEFITNSAATLD 701



 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L +T+    RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 608 DKYVYTYSDRELRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIS 667

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           + D   A+ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 668 MNDLDSAEQVFDLLMGNEVAPRKEFITNSA--ATLD 701


>gi|225348707|gb|ACN87315.1| DNA gyrase beta-subunit [Amycolatopsis umgeniensis]
          Length = 468

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/471 (46%), Positives = 303/471 (64%), Gaps = 16/471 (3%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
            GLHH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV
Sbjct: 1   RGLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEV 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           ++T LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   IKR G+ +   + + I    
Sbjct: 61  VLTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEIKRGGHSWRQEYTDQIP-GE 119

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G A  DTGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  + 
Sbjct: 120 LEDLGPAE-DTGTVITFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADE 178

Query: 219 REI-------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
                           T  Y GG+E FV +++  K P+  S I  +     + +++AM+W
Sbjct: 179 ETEEDASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTGLEVEVAMQW 238

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N+G+  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG
Sbjct: 239 NNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREG 298

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK ++ K + +
Sbjct: 299 LAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTVINKSISS 358

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           S  R AAR+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR  
Sbjct: 359 SQARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDS 418

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
             QAILP+RGKI+NVE+AR D++L + E+ +LITALGTGI  D FD+ KLR
Sbjct: 419 MYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI-HDEFDLEKLR 468


>gi|254805438|ref|YP_003083659.1| topoisomerase IV subunit B [Neisseria meningitidis alpha14]
 gi|304386839|ref|ZP_07369103.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria meningitidis
           ATCC 13091]
 gi|254668980|emb|CBA07308.1| topoisomerase IV subunit B [Neisseria meningitidis alpha14]
 gi|254671649|emb|CBA09375.1| topoisomerase IV subunit B [Neisseria meningitidis alpha153]
 gi|304339093|gb|EFM05183.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria meningitidis
           ATCC 13091]
 gi|308389804|gb|ADO32124.1| topoisomerase IV subunit B [Neisseria meningitidis alpha710]
          Length = 661

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 218/676 (32%), Positives = 336/676 (49%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   +++++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|161348145|ref|ZP_02095533.1| DNA topoisomerase IV, B subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|164601296|gb|EDQ95073.1| DNA topoisomerase IV, B subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 636

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/560 (37%), Positives = 304/560 (54%), Gaps = 12/560 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y A++I++L GL+ VK+RP MY   TD     +H+ +E +DN++DE++ G+A
Sbjct: 3   TKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRP-NHLAHEAIDNSVDEAIAGFA 58

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + V L  DGS  V D+GRG+P D+H E  ++  E+I+TRLHAG KF+ K+Y+ SGGLH
Sbjct: 59  QNVEVILYKDGSLEVIDDGRGMPIDVHPEHKLTGVELILTRLHAGAKFSTKTYEYSGGLH 118

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           GVG+SVVNALS  L +++K++G IY+M F +G   + L   GS   +++GT + F P S 
Sbjct: 119 GVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPDSH 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F    L+H +R  + L   + +  ID+ + +  +             S  DR +
Sbjct: 179 YFDSVKFGVSALKHTMRAKAVLCLGLTVHFIDENTGQRLQWYYAEGLKTYLADSLRDRER 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P         G  +     LA    D        + N IP   GGTH++GLR+ L   +
Sbjct: 239 LPEEPWVGSFSGETEKADWALAWLPEDDEGIR-ESYVNLIPTPQGGTHVNGLRTGLLEAM 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      ++   +  +D  E    VLS+KM +P+FS QTKE+L S +    V   V
Sbjct: 298 REFCEIHKLLPRN-LKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVFVSGVV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL  +    K + + V+  +  R    +      RK V    +LPGKLADC   
Sbjct: 357 KDAFSLWLNHNVEIGKTLAELVIANAQKRLCMSKK---IERKKVTTGPALPGKLADCILS 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + ELFLVEGDSAGGSAKQ R +  QAI+PLRGKILN      +++L+SQ +  +  A
Sbjct: 414 DPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQAVHDIAIA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G     DS ++  LRY KI I+ DAD DG HI TLL   F +    L+ +G +Y+  PP
Sbjct: 474 IGVDP--DSSNLEGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHVYVAMPP 531

Query: 541 LYGITRGKSLQYVKDEESLE 560
           LY I  GK + Y  DEE  E
Sbjct: 532 LYRIDVGKDVFYALDEEEKE 551



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +   KG I++QR+KGLGEMN SQL ETT+NPDTR L+R+ +    + + L  
Sbjct: 551 EGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRETTMNPDTRHLVRLTVKSKDKTEQLLD 610

Query: 779 RLMGDE-VEPRREFIQE 794
            L+  +    RR+++++
Sbjct: 611 MLLAKKRAADRRDWLEK 627


>gi|161830424|ref|YP_001596021.1| DNA topoisomerase IV subunit B [Coxiella burnetii RSA 331]
 gi|161762291|gb|ABX77933.1| DNA topoisomerase IV, B subunit [Coxiella burnetii RSA 331]
          Length = 636

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/560 (37%), Positives = 304/560 (54%), Gaps = 12/560 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y A++I++L GL+ VK+RP MY   TD     +H+ +E +DN++DE++ G+A
Sbjct: 3   TKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRP-NHLAHEAIDNSVDEAIAGFA 58

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + V L  DGS  V D+GRG+P D+H E  ++  E+I+TRLHAG KF+ K+Y+ SGGLH
Sbjct: 59  QNVEVILYKDGSLEVIDDGRGMPIDVHPEHKLTGVELILTRLHAGAKFSTKTYEYSGGLH 118

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           GVG+SVVNALS  L +++K++G IY+M F +G   + L   GS   +++GT + F P S 
Sbjct: 119 GVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPDSH 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F    L+H +R  + L   + +  ID+ + +  +             S  DR +
Sbjct: 179 YFDSVKFGVSALKHTMRAKAVLCPGLTVHFIDENTGQRLQWYYAEGLKTYLADSLRDRER 238

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P         G  +     LA    D        + N IP   GGTH++GLR+ L   +
Sbjct: 239 LPEEPWVGSFSGETEKADWALAWLPEDDEGIR-ESYVNLIPTPQGGTHVNGLRTGLLEAM 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      ++   +  +D  E    VLS+KM +P+FS QTKE+L S +    V   V
Sbjct: 298 REFCEIHKLLPRN-LKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVFVSGVV 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL  +    K + + V+  +  R    +      RK V    +LPGKLADC   
Sbjct: 357 KDAFSLWLNHNVEIGKTLAELVIANAQKRLRMSKK---IERKKVTTGPALPGKLADCILS 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + ELFLVEGDSAGGSAKQ R +  QAI+PLRGKILN      +++L+SQ +  +  A
Sbjct: 414 DPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQTVHDIAIA 473

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G     DS ++  LRY KI I+ DAD DG HI TLL   F +    L+ +G +Y+  PP
Sbjct: 474 IGVDP--DSSNLEGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHVYVAMPP 531

Query: 541 LYGITRGKSLQYVKDEESLE 560
           LY I  GK + Y  DEE  E
Sbjct: 532 LYRIDVGKDVFYALDEEEKE 551



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +   KG I++QR+KGLGEMN SQL ETT+NPDTR L+R+ +    + + L  
Sbjct: 551 EGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRETTMNPDTRHLVRLTVKSKDKTEQLLD 610

Query: 779 RLMGDE-VEPRREFIQE 794
            L+  +    RR+++++
Sbjct: 611 MLLAKKRAADRRDWLEK 627


>gi|218768702|ref|YP_002343214.1| DNA topoisomerase IV subunit B [Neisseria meningitidis Z2491]
 gi|121052710|emb|CAM09053.1| topoisomerase IV subunit B [Neisseria meningitidis Z2491]
 gi|319410935|emb|CBY91330.1| topoisomerase IV subunit B [Neisseria meningitidis WUE 2594]
          Length = 661

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 216/598 (36%), Positives = 319/598 (53%), Gaps = 31/598 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   +++++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I      +GV
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGILERLQKEGV 584



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFFKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|296129899|ref|YP_003637149.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
 gi|296021714|gb|ADG74950.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
          Length = 713

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 237/648 (36%), Positives = 340/648 (52%), Gaps = 64/648 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     + Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+
Sbjct: 1   MTTTSPQAGYTARHLSVLEGLEAVRKRPGMYIGTTDS-RGLMHCLWEIIDNSVDEALGGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V L+ D S  V DNGRGIP D+  + G++  EV++T+LHAGGKF   SY  SGGL
Sbjct: 60  GDRIEVVLHADSSVEVRDNGRGIPVDVEPKTGLTGVEVVLTKLHAGGKFGGGSYAASGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------DNP------------LV 160
           HGVG SVVNALS+ L + + R G  + M+F  G           +P            L 
Sbjct: 120 HGVGASVVNALSARLDVEVDRNGRTHRMTFHRGEPGVFDDSAGVSPESPFEPFVQGSELA 179

Query: 161 VTGSA-GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR---- 214
           V G      TGT V +     IF     F+YD L  R R+ SFL   + I++ D+R    
Sbjct: 180 VVGKVGKGVTGTRVRYWADRQIFPKTAVFSYDELVTRARQTSFLVPGLAITVRDERGIPG 239

Query: 215 ---SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------ 253
                 P E T  + GG+  FV +L           +   G+                  
Sbjct: 240 TPGEHGPHEETFLHTGGVLDFVDHLAPDAPVTDTWHLTGSGTFTETVPVLDSRGHMTPQE 299

Query: 254 -RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
              +  +D+A+RW  GY   V  F N I    GGTHL+G  +AL + + + V  +    K
Sbjct: 300 VTRDCEVDVAVRWGTGYATEVRSFVNIISTPKGGTHLAGFETALLKTLRTQVTANARRLK 359

Query: 313 DKRSVI------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                        +D   G T+V+++++ +P+F  QTKE L +  VR +V   V   L+A
Sbjct: 360 ISAKDSSSERLEKEDVLAGLTAVVTVRLAEPQFEGQTKEVLGTGPVRGIVAKVVESELTA 419

Query: 367 WLEEHPLEAKI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
                  E K     ++ KV+     R +AR+ ++++RRK  L+ +SLP KLADC   D 
Sbjct: 420 LFSSSKREHKAHTALLLDKVVGEMRARVSARKQKEISRRKNALESSSLPAKLADCRIDDV 479

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELF+VEGDSA G+AK  RS + QA+LP+RGKILNV++A    ML + E   +I  +G
Sbjct: 480 SRSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLKNAECAAIIQVVG 539

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G+  FD+   RY KI++MTDADVDGAHIRTLLLT FFR M  L+ +G +Y   PPL+
Sbjct: 540 AGSGRT-FDLEAARYGKIVLMTDADVDGAHIRTLLLTLFFRYMRPLVEDGRVYAAVPPLH 598

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
            I     +      ++   Y  +++         D  G   K+D++ +
Sbjct: 599 RI----EVIGAGSRKNEYLYTYSEAELAATLKKLDRAGRRYKDDIQRY 642



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 10/102 (9%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLR 764
              + +       L  T+  + R G      +QRYKGLGEM+A QL ETT++P  R+L R
Sbjct: 608 RKNEYLYTYSEAELAATLKKLDRAGRRYKDDIQRYKGLGEMDADQLAETTMDPRHRTLRR 667

Query: 765 VKI----TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           V+I      A+Q + +F  LMG +V PR++FI  N+   ALD
Sbjct: 668 VRIGEAEAAAAQVEKVFELLMGSDVAPRKDFIVANAH--ALD 707


>gi|315633998|ref|ZP_07889287.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aggregatibacter segnis
           ATCC 33393]
 gi|315477248|gb|EFU67991.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aggregatibacter segnis
           ATCC 33393]
          Length = 634

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 224/648 (34%), Positives = 326/648 (50%), Gaps = 20/648 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              ++Y A+ I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I
Sbjct: 2   TMTTNYSANEITVLKDLEPVQLRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKI 57

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V+DNGRG+P D+H  E +S  EVIM++LHAGGKF+ K+Y  SGGLHGVG
Sbjct: 58  EVILHKDQSIEVTDNGRGMPVDIHPVEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVG 117

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFS 183
           +SVVNALS  + + +KR G +Y+++F NG     L V        TGT V F P+   F 
Sbjct: 118 ISVVNALSERVDVTVKRNGEVYKIAFENGQKVEDLTVIGTCGRRTTGTTVHFKPNPKYFD 177

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
            + F+   L+H LR  + L S ++I  IDK +                  +       P 
Sbjct: 178 SEKFSVSRLRHLLRAKAVLCSGLEIKFIDKVNDTEDTWLYQDGLNDYLMEAVNGLVTLPE 237

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                  +G ++ +S    +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 238 QPFIGEFKGEKEAVSW-ALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGLLDAMREF 296

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +    +   V D 
Sbjct: 297 CEFRNLLPRG-VKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAVFIGGVVKDA 355

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++   A+++    + ++       RA     RK ++   +LPGKLADCS +D  
Sbjct: 356 FSLWLNQNVQTAELLADMAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCSSQDIN 412

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      +++L+SQE+  +  A+  
Sbjct: 413 LTELFLVEGDSAGGSAKQAREREYQAILPLRGKILNTWEVSPEQVLASQEVHDI--AVAL 470

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +Y+  PPLY 
Sbjct: 471 GIDPDNDDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEQGHVYVAMPPLYR 530

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK + Y  DE   +  L               K  + +      ++     +  +  
Sbjct: 531 IDLGKEVFYALDESEKDAILDRLKGK-------KGKPNVQRFKGLGEMNPMQLRETTMDP 583

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAEKSE 650
                 +   E          E+    +    A    N L    ++ +
Sbjct: 584 NTRRLVQLTFEAQGEQSQETIETMDMLLAKKRAEDRKNWLQAKGDQVD 631



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 724 DTIFS--IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
           D I     G+KG  ++QR+KGLGEMN  QL ETT++P+TR L+++   
Sbjct: 547 DAILDRLKGKKGKPNVQRFKGLGEMNPMQLRETTMDPNTRRLVQLTFE 594


>gi|212219466|ref|YP_002306253.1| DNA topoisomerase IV subunit B [Coxiella burnetii CbuK_Q154]
 gi|212013728|gb|ACJ21108.1| topoisomerase IV subunit B [Coxiella burnetii CbuK_Q154]
          Length = 641

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/560 (37%), Positives = 304/560 (54%), Gaps = 12/560 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y A++I++L GL+ VK+RP MY   TD     +H+ +E +DN++DE++ G+A
Sbjct: 8   TKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRP-NHLAHEAIDNSVDEAIAGFA 63

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + V L  DGS  V D+GRG+P D+H E  ++  E+I+TRLHAG KF+ K+Y+ SGGLH
Sbjct: 64  QNVEVILYKDGSLEVIDDGRGMPIDVHPEHKLTGVELILTRLHAGAKFSTKTYEYSGGLH 123

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           GVG+SVVNALS  L +++K++G IY+M F +G   + L   GS   +++GT + F P S 
Sbjct: 124 GVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPDSH 183

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F    L+H +R  + L   + +  ID+ + +  +             S  DR +
Sbjct: 184 YFDSVKFGVSALKHTMRAKAVLCLGLTVHFIDENTGQRLQWYYAEGLKTYLADSLRDRER 243

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P         G  +     LA    D        + N IP   GGTH++GLR+ L   +
Sbjct: 244 LPEEPWVGSFSGETEKADWALAWLPEDDEGIR-ESYVNLIPTPQGGTHVNGLRTGLLEAM 302

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      ++   +  +D  E    VLS+KM +P+FS QTKE+L S +    V   V
Sbjct: 303 REFCEIHKLLPRN-LKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVFVSGVV 361

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL  +    K + + V+  +  R    +      RK V    +LPGKLADC   
Sbjct: 362 KDAFSLWLNHNVEIGKTLAELVIANAQKRLCMSKK---IERKKVTTGPALPGKLADCILS 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + ELFLVEGDSAGGSAKQ R +  QAI+PLRGKILN      +++L+SQ +  +  A
Sbjct: 419 DPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQAVHDIAIA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G     DS ++  LRY KI I+ DAD DG HI TLL   F +    L+ +G +Y+  PP
Sbjct: 479 IGVDP--DSSNLEGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHVYVAMPP 536

Query: 541 LYGITRGKSLQYVKDEESLE 560
           LY I  GK + Y  DEE  E
Sbjct: 537 LYRIDVGKDVFYALDEEEKE 556



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +   KG I++QR+KGLGEMN SQL ETT+NPDTR L+R+ +    + + L  
Sbjct: 556 EGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRETTMNPDTRHLVRLTVKSKDKTEQLLD 615

Query: 779 RLMGDE-VEPRREFIQE 794
            L+  +    RR+++++
Sbjct: 616 MLLAKKRAADRRDWLEK 632


>gi|261392093|emb|CAX49590.1| topoisomerase IV subunit B [Neisseria meningitidis 8013]
          Length = 661

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 218/676 (32%), Positives = 337/676 (49%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   +++++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|325144924|gb|EGC67208.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M01-240013]
 gi|325205601|gb|ADZ01054.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M04-240196]
          Length = 661

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 221/676 (32%), Positives = 338/676 (50%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|215918876|ref|NP_819117.2| DNA topoisomerase IV subunit B [Coxiella burnetii RSA 493]
 gi|206583761|gb|AAO89631.2| topoisomerase IV subunit B [Coxiella burnetii RSA 493]
          Length = 641

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/560 (37%), Positives = 304/560 (54%), Gaps = 12/560 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y A++I++L GL+ VK+RP MY   TD     +H+ +E +DN++DE++ G+A
Sbjct: 8   TKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRP-NHLAHEAIDNSVDEAIAGFA 63

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + V L  DGS  V D+GRG+P D+H E  ++  E+I+TRLHAG KF+ K+Y+ SGGLH
Sbjct: 64  QNVEVILYKDGSLEVIDDGRGMPIDVHPEHKLTGVELILTRLHAGAKFSTKTYEYSGGLH 123

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           GVG+SVVNALS  L +++K++G IY+M F +G   + L   GS   +++GT + F P S 
Sbjct: 124 GVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPDSH 183

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F    L+H +R  + L   + +  ID+ + +  +             S  DR +
Sbjct: 184 YFDSVKFGVSALKHTMRAKAVLCPGLTVHFIDENTGQRLQWYYAEGLKTYLADSLRDRER 243

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P         G  +     LA    D        + N IP   GGTH++GLR+ L   +
Sbjct: 244 LPEEPWVGSFSGETEKADWALAWLPEDDEGIR-ESYVNLIPTPQGGTHVNGLRTGLLEAM 302

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      ++   +  +D  E    VLS+KM +P+FS QTKE+L S +    V   V
Sbjct: 303 REFCEIHKLLPRN-LKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVFVSGVV 361

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL  +    K + + V+  +  R    +      RK V    +LPGKLADC   
Sbjct: 362 KDAFSLWLNHNVEIGKTLAELVIANAQKRLRMSKK---IERKKVTTGPALPGKLADCILS 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + ELFLVEGDSAGGSAKQ R +  QAI+PLRGKILN      +++L+SQ +  +  A
Sbjct: 419 DPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQTVHDIAIA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G     DS ++  LRY KI I+ DAD DG HI TLL   F +    L+ +G +Y+  PP
Sbjct: 479 IGVDP--DSSNLEGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHVYVAMPP 536

Query: 541 LYGITRGKSLQYVKDEESLE 560
           LY I  GK + Y  DEE  E
Sbjct: 537 LYRIDVGKDVFYALDEEEKE 556



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +   KG I++QR+KGLGEMN SQL ETT+NPDTR L+R+ +    + + L  
Sbjct: 556 EGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRETTMNPDTRHLVRLTVKSKDKTEQLLD 615

Query: 779 RLMGDE-VEPRREFIQE 794
            L+  +    RR+++++
Sbjct: 616 MLLAKKRAADRRDWLEK 632


>gi|194339081|gb|ACF49456.1| GyrB [Amycolatopsis keratiniphila subsp. nogabecina]
          Length = 466

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/469 (45%), Positives = 303/469 (64%), Gaps = 16/469 (3%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
           SGLHH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV
Sbjct: 1   SGLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDIHPKEQKPTLEV 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           ++T LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   +KR G+ +   + + I    
Sbjct: 61  VLTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQVYTDQIP-GE 119

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G A  DTGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  + 
Sbjct: 120 LEDLGPAE-DTGTTITFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADE 178

Query: 219 REI-------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
                           T  Y GG+E FV +++  K P+  S I  +     + +++AM+W
Sbjct: 179 ETEADASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTGLEVEVAMQW 238

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N+G+  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG
Sbjct: 239 NNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLSGDDVREG 298

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + +
Sbjct: 299 LAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISS 358

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR  
Sbjct: 359 AQARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDS 418

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
             QAILP+RGKI+NVE+AR D++L + E+ +LITALGTGI ++ FDI K
Sbjct: 419 MYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHEE-FDIEK 466


>gi|254494123|ref|ZP_05107294.1| topoisomerase IV subunit B [Neisseria gonorrhoeae 1291]
 gi|226513163|gb|EEH62508.1| topoisomerase IV subunit B [Neisseria gonorrhoeae 1291]
          Length = 661

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/676 (32%), Positives = 337/676 (49%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KR+G ++ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS  + DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSACVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAQLDI 661


>gi|209364253|ref|YP_001425349.2| DNA topoisomerase IV subunit B [Coxiella burnetii Dugway 5J108-111]
 gi|207082186|gb|ABS78278.2| topoisomerase IV subunit B [Coxiella burnetii Dugway 5J108-111]
          Length = 641

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/560 (37%), Positives = 304/560 (54%), Gaps = 12/560 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y A++I++L GL+ VK+RP MY   TD     +H+ +E +DN++DE++ G+A
Sbjct: 8   TKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRP-NHLAHEAIDNSVDEAIAGFA 63

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + V L  DGS  V D+GRG+P D+H E  ++  E+I+TRLHAG KF+ K+Y+ SGGLH
Sbjct: 64  QNVEVILYKDGSLEVIDDGRGMPIDVHPEHKLTGVELILTRLHAGAKFSTKTYEYSGGLH 123

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           GVG+SVVNALS  L +++K++G IY+M F +G   + L   GS   +++GT + F P S 
Sbjct: 124 GVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPDSH 183

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F    L+H +R  + L   + +  ID+ + +  +             S  DR +
Sbjct: 184 YFDSVKFGVSALKHTMRAKAVLCPGLTVHFIDENTGQRLQWYYAEGLKTYLADSLRDRER 243

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P         G  +     LA    D        + N IP   GGTH++GLR+ L   +
Sbjct: 244 LPEEPWVGSFSGETEKADWALAWLPEDDEGIR-ESYVNLIPTPQGGTHVNGLRTGLLEAM 302

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      ++   +  +D  E    VLS+KM +P+FS QTKE+L S +    V   V
Sbjct: 303 REFCEIHKLLPRN-LKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVFVSGVV 361

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL  +    K + + V+  +  R    +      RK V    +LPGKLADC   
Sbjct: 362 KDAFSLWLNHNVEIGKTLAELVIANAQKRLRMSKK---IERKKVTTGPALPGKLADCILS 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + ELFLVEGDSAGGSAKQ R +  QAI+PLRGKILN      +++L+SQ +  +  A
Sbjct: 419 DPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQAVHDIAIA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G     DS ++  LRY KI I+ DAD DG HI TLL   F +    L+ +G +Y+  PP
Sbjct: 479 IGVDP--DSSNLEGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHVYVAMPP 536

Query: 541 LYGITRGKSLQYVKDEESLE 560
           LY I  GK + Y  DEE  E
Sbjct: 537 LYRIDVGKDVFYALDEEEKE 556



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +   KG I++QR+KGLGEMN SQL ETT+NPDTR L+R+ +    + + L  
Sbjct: 556 EGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRETTMNPDTRHLVRLTVKSKDKTEQLLD 615

Query: 779 RLMGDE--VEPRREFIQE 794
            L+ D+     RR+++++
Sbjct: 616 MLL-DKKRAADRRDWLEK 632


>gi|145631948|ref|ZP_01787702.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021]
 gi|144982399|gb|EDJ89973.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021]
          Length = 632

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 229/645 (35%), Positives = 342/645 (53%), Gaps = 23/645 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L V        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            P     +G+ + +S    +   +G       + N IP   GGTH++GLR  L   I  +
Sbjct: 236 KPFVGEFKGTNEAVSW-ALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D 
Sbjct: 295 CEFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDA 353

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +
Sbjct: 354 FSLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLE 410

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  
Sbjct: 411 KTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVAL 468

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY 
Sbjct: 469 GIDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYR 528

Query: 544 ITRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDK 599
           I   K + Y  DE   E     +     +         G ++ + LR    D    ++ +
Sbjct: 529 IDLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQ 588

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           L  D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 589 LTYDLGEDQSSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            ++LD + +  +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 545 EAILDRLKN--KKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|225076315|ref|ZP_03719514.1| hypothetical protein NEIFLAOT_01356 [Neisseria flavescens
           NRL30031/H210]
 gi|224952439|gb|EEG33648.1| hypothetical protein NEIFLAOT_01356 [Neisseria flavescens
           NRL30031/H210]
          Length = 661

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/676 (32%), Positives = 338/676 (50%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MTKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH  EG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVRIHDDGSLSVHDNGRGIPVGLHPVEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG ++ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKVHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   P+      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ NG +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVANGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEKEGD 655



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR ++++    + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEKEGDTAELDI 661


>gi|325127116|gb|EGC50071.1| DNA topoisomerase 4 subunit B [Neisseria meningitidis N1568]
          Length = 562

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 211/568 (37%), Positives = 305/568 (53%), Gaps = 28/568 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALSS L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSSRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   P+      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVAGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
             P L+ +G +Y+ +PPL+ +      +
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK 557


>gi|69093248|gb|AAZ03387.1| GyrB [Burkholderia multivorans]
          Length = 614

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 269/618 (43%), Positives = 381/618 (61%), Gaps = 20/618 (3%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169
           GVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G    + 
Sbjct: 1   GVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIGDTE-NR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG+
Sbjct: 60  GTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + FV Y+++ K  L  +   + G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL
Sbjct: 118 KGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVS
Sbjct: 178 TGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD   
Sbjct: 238 SEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+L
Sbjct: 298 LPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP +I
Sbjct: 358 SSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMI 417

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G++YI +PPLY +  GK  +Y+KD+  L  +++  +L     L  ++   I+ + L  
Sbjct: 418 ERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQGSELLPSENATPITGDALGE 477

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
                L    +I+     +D   +E  +     +  S +    + A  L   L+    K+
Sbjct: 478 LARSYLMSQSVIERLSRLYDPAALEAIMDGVSIDL-SSEASTEASAKALHAALHDDTLKN 536

Query: 650 EKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
           E      +        + V+R   G     V++     +   +     +   E       
Sbjct: 537 EVRVVPAYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVNTAKTFEGLIQAGA 596

Query: 706 SLICNGDKIKITGPCSLL 723
            +      + +T   + +
Sbjct: 597 VIKRGERSMAVTDFKNAM 614


>gi|212213404|ref|YP_002304340.1| DNA topoisomerase IV subunit B [Coxiella burnetii CbuG_Q212]
 gi|212011814|gb|ACJ19195.1| topoisomerase IV subunit B [Coxiella burnetii CbuG_Q212]
          Length = 641

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/560 (37%), Positives = 304/560 (54%), Gaps = 12/560 (2%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +       Y A++I++L GL+ VK+RP MY   TD     +H+ +E +DN++DE++ G+A
Sbjct: 8   TKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRP-NHLAHEAIDNSVDEAIAGFA 63

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + V L  DGS  V D+GRG+P D+H E  ++  E+I+TRLHAG KF+ K+Y+ SGGLH
Sbjct: 64  QNVEVILYKDGSLEVIDDGRGMPIDVHPEHKLTGVELILTRLHAGAKFSTKTYEYSGGLH 123

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           GVG+SVVNALS  L +++K++G IY+M F +G   + L   GS   +++GT + F P S 
Sbjct: 124 GVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPDSH 183

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F    L+H +R  + L   + +  ID+ + +  +             S  DR +
Sbjct: 184 YFDSVKFWVSALKHTMRAKAVLCPGLTVHFIDENTGQRLQWYYAEGLKTYLADSLRDRER 243

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P         G  +     LA    D        + N IP   GGTH++GLR+ L   +
Sbjct: 244 LPEEPWVGSFSGETEKADWALAWLPEDDEGIR-ESYVNLIPTPQGGTHVNGLRTGLLEAM 302

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + E      ++   +  +D  E    VLS+KM +P+FS QTKE+L S +    V   V
Sbjct: 303 REFCEIHKLLPRN-LKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVFVSGVV 361

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D  S WL  +    K + + V+  +  R    +      RK V    +LPGKLADC   
Sbjct: 362 KDAFSLWLNHNVEIGKTLAELVIANAQKRLRMSKK---IERKKVTTGPALPGKLADCILS 418

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP + ELFLVEGDSAGGSAKQ R +  QAI+PLRGKILN      +++L+SQ +  +  A
Sbjct: 419 DPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQTVHDIAIA 478

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G     DS ++  LRY KI I+ DAD DG HI TLL   F +    L+ +G +Y+  PP
Sbjct: 479 IGVDP--DSSNLEGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHVYVAMPP 536

Query: 541 LYGITRGKSLQYVKDEESLE 560
           LY I  GK + Y  DEE  E
Sbjct: 537 LYRIDVGKDVFYALDEEEKE 556



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             +LD I +   KG I++QR+KGLGEMN SQL ETT+NPDTR L+R+ +    + + L  
Sbjct: 556 EGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRETTMNPDTRHLVRLTVKSKDKTEQLLD 615

Query: 779 RLMGDE-VEPRREFIQE 794
            L+  +    RR+++++
Sbjct: 616 MLLAKKRAADRRDWLEK 632


>gi|145634903|ref|ZP_01790610.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittAA]
 gi|145267769|gb|EDK07766.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittAA]
          Length = 632

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 229/645 (35%), Positives = 341/645 (52%), Gaps = 23/645 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L V        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR    L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKGVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            P     +G+ + +S    +   +G       + N IP   GGTH++GLR  L   I  +
Sbjct: 236 KPFVGEFKGTNEAVSW-ALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D 
Sbjct: 295 CEFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDA 353

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +
Sbjct: 354 FSLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLE 410

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  
Sbjct: 411 KTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVAL 468

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY 
Sbjct: 469 GIDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYR 528

Query: 544 ITRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDK 599
           I   K + Y  DE   E     +     +         G ++ + LR    D    ++ +
Sbjct: 529 IDLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQ 588

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           L  D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 589 LTYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            ++LD + +  +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 545 EAILDRLKN--KKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|218680313|ref|ZP_03528210.1| DNA gyrase subunit B [Rhizobium etli CIAT 894]
          Length = 421

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 245/362 (67%), Positives = 306/362 (84%)

Query: 19  KGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSD 78
           KGLDAV+ RP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+ADI+TVTLN DGS TV+D
Sbjct: 1   KGLDAVRTRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADIVTVTLNPDGSVTVTD 60

Query: 79  NGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLR 138
           NGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WLKL+
Sbjct: 61  NGRGIPTDIHSGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVWLKLK 120

Query: 139 IKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRE 198
           I+R+G I+EMSF +G+ D PL VTG A ++TGTEV+F+PSS+ F++ +F+Y TL+HRLRE
Sbjct: 121 IRRQGKIHEMSFTHGVADAPLKVTGDAPDETGTEVSFMPSSETFTMTEFDYGTLEHRLRE 180

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           L+FLNS V+I L DKR  + ++  + Y GG+EAFV+YLDR KK L+  P+ I+G +D I+
Sbjct: 181 LAFLNSGVRILLTDKRHSDIKQEELRYDGGLEAFVAYLDRAKKSLVDKPVAIRGEKDGIT 240

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ SY + S  +KK+K ++ 
Sbjct: 241 VEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVVSYADNSGITKKEKVTLQ 300

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ LS W EEHP EAKI+
Sbjct: 301 GEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSTWFEEHPSEAKIL 360

Query: 379 VK 380
           V 
Sbjct: 361 VG 362


>gi|145639071|ref|ZP_01794679.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittII]
 gi|145272043|gb|EDK11952.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittII]
 gi|309751023|gb|ADO81007.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae R2866]
          Length = 632

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 229/645 (35%), Positives = 342/645 (53%), Gaps = 23/645 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L V        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            P     +G+ + +S    +   +G       + N IP   GGTH++GLR  L   I  +
Sbjct: 236 KPFVGEFKGTNEAVSW-ALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D 
Sbjct: 295 CEFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDA 353

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +
Sbjct: 354 FSLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLE 410

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  
Sbjct: 411 KTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVAL 468

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY 
Sbjct: 469 GIDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYR 528

Query: 544 ITRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDK 599
           I   K + Y  DE   E     +     +         G ++ + LR    D    ++ +
Sbjct: 529 IDLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQ 588

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           L  D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 589 LTYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            ++LD + +  +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 545 EAILDRLKN--KKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|328885549|emb|CCA58788.1| Topoisomerase IV subunit B [Streptomyces venezuelae ATCC 10712]
          Length = 705

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 238/682 (34%), Positives = 349/682 (51%), Gaps = 48/682 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H I+E++DN++DE+L GY D I V 
Sbjct: 20  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCIWEIIDNSVDEALGGYCDHIEVI 78

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 79  LHDDGSVEVQDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 138

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVV-TGSAGNDTGTE 172
           VNALS+ L + + R    + +SF  G+        P         L          TGT 
Sbjct: 139 VNALSARLDVEVDRNSATHAISFRRGVPGIFTEQGPDSPFDPGNGLRKGKRVPKTRTGTR 198

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---PEPREITMFYKGG 228
           V +     IF      + +TL  R R+ +FL   + I + D+R        E T  + GG
Sbjct: 199 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRDERDLAGIGKSEETFRFDGG 258

Query: 229 IEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDGY 269
           I  F  YL + K              +  + +   R +++         +D+A+RW  GY
Sbjct: 259 ISEFCEYLAQDKAVCDIQRLTGQGTFKETVPVLDERGHMTPTEVTRELAVDVALRWGTGY 318

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
              V  F N I    GGTH+SG   A+T+ +   +  +   +  +  ++ DD  EG T+V
Sbjct: 319 DSTVKSFVNIIATPKGGTHVSGFEQAVTKTVNEVLRSAKMLRVAEDDIVKDDALEGLTAV 378

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDA 385
           +++++ +P+F  QTKE L +S  R +V + V   L A+L     +AK     +++K + A
Sbjct: 379 VTVRLAEPQFEGQTKEILGTSAARRIVANVVAKELKAFLTSTKRDAKAQARAVLEKAVAA 438

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ ++  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R+ 
Sbjct: 439 ARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARNS 498

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KI+++ D
Sbjct: 499 EFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKIVLLVD 557

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLED 561
           ADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      E 
Sbjct: 558 ADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNEL 617

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                    +   + D+          +    A              +   ++ A     
Sbjct: 618 RQTLLEFQRKGVRYKDAIQRYKGLGEMDADQLAETTMDPRHRTLRRINIGDLDAAEQVFD 677

Query: 622 FNCESDQEINVSLASKLANRLN 643
               +D        +  A  L+
Sbjct: 678 LLMGNDVAPRKEFITGSAATLD 699



 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+    RKG+    ++QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 606 DKYVYTYSDNELRQTLLEFQRKGVRYKDAIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 665

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   A+ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 666 IGDLDAAEQVFDLLMGNDVAPRKEFITGSA--ATLD 699


>gi|298369978|ref|ZP_06981294.1| DNA topoisomerase IV, B subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281438|gb|EFI22927.1| DNA topoisomerase IV, B subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 661

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/598 (35%), Positives = 317/598 (53%), Gaps = 31/598 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MTKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH  EG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVRIHNDGSLSVHDNGRGIPVGLHPVEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFSKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I      +GV
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSILERLQKEGV 584



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPKGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|115381178|gb|ABI96238.1| DNA topoisomerase IV subunit B [Spiroplasma insolitum]
          Length = 554

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 237/560 (42%), Positives = 341/560 (60%), Gaps = 14/560 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L GY   I VT++ + + TV DNGRG+PT  H   G
Sbjct: 1   GSTD-VRGLHHLVWEIVDNSIDEALAGYCTEINVTIHKNNAITVQDNGRGVPTGKHAS-G 58

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  E+I + LHAGGKF    YK SGGLHGVG SVVNALSS   ++I R+  I+ + F N
Sbjct: 59  KSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSVFDVKIYRDQKIWHIKFGN 118

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G +  PL   G+      T VTFLP S IF V DF++ T+  R+RE +FLNS V+I+L 
Sbjct: 119 GGQVKQPLTQIGTTNETG-TTVTFLPDSKIFKVIDFSFSTISERIRESAFLNSGVKITLT 177

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D R+ +  E       G+E F+SY++  KK +    + ++G    I +++A++++  ++E
Sbjct: 178 DDRADKTVEYLF--NNGLEEFISYMNEGKKNITP-IVMMKGLEKEIEVEVALQYSTEFNE 234

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+L F NN+   +GG+H+ G RS LT+ I  Y  K    K+  +++   D REG T+++S
Sbjct: 235 NLLSFANNVKTSEGGSHVVGFRSGLTKVINDYARKEGLLKEKDKNLDSTDTREGLTAIIS 294

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+   ++  QTK KL + + R+ VE  V      WL E+   A  I++K L A  VR
Sbjct: 295 VKVPESLIQYEGQTKGKLGTYDARTAVEIIVTKQFGFWLTENKTSAYAIIEKALLARNVR 354

Query: 390 DAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           + AR+AR+     +K       L GKL     R+   +E+FLVEGDSAGGSAK GR R  
Sbjct: 355 EEARKAREAARNNKKRGNSDRLLTGKLTPAQNRNKLSNEIFLVEGDSAGGSAKLGRDRRF 414

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGK++N E+A+   +++++EI  +I A+G G+G   FDI    Y K+IIMTDAD
Sbjct: 415 QAILPLRGKVINAEKAKMQDLMNNEEINVMINAIGAGVGNA-FDIEDANYGKVIIMTDAD 473

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI--TRGKSLQYVKDEESLEDYLIN 565
            DGAHI+TLLLTFF+R M  LI N  +YI  PPL+ I  T+ K + Y  DE  L+  L  
Sbjct: 474 TDGAHIQTLLLTFFYRYMRPLIENHRVYIALPPLFKILNTKNKKIDYAWDENELKTKLST 533

Query: 566 QSLSEEIELFCDSKGVISKN 585
                E++ +     + ++ 
Sbjct: 534 LKDKFELQRYKGLGEMNAEQ 553



 Score = 54.2 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 1/131 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +N I      ++     N   ++           +    
Sbjct: 424 VINAEKAKMQDLMNNEEINVMINAIGAGVGNAFDIEDANYGKVIIMTDADTDGAHIQTLL 483

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITGPCSLLDTIFSIGRKGISMQRY 739
             F +      I ++R+      +  ++     KI      + L T  S  +    +QRY
Sbjct: 484 LTFFYRYMRPLIENHRVYIALPPLFKILNTKNKKIDYAWDENELKTKLSTLKDKFELQRY 543

Query: 740 KGLGEMNASQL 750
           KGLGEMNA QL
Sbjct: 544 KGLGEMNAEQL 554


>gi|194099098|ref|YP_002002183.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|239999404|ref|ZP_04719328.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02]
 gi|240014581|ref|ZP_04721494.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI18]
 gi|240017026|ref|ZP_04723566.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA6140]
 gi|240081338|ref|ZP_04725881.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19]
 gi|240113547|ref|ZP_04728037.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae MS11]
 gi|240118387|ref|ZP_04732449.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID1]
 gi|240121103|ref|ZP_04734065.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID24-1]
 gi|240123932|ref|ZP_04736888.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID332]
 gi|240126132|ref|ZP_04739018.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|240128609|ref|ZP_04741270.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|268595224|ref|ZP_06129391.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02]
 gi|268597440|ref|ZP_06131607.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19]
 gi|268599612|ref|ZP_06133779.1| topoisomerase IV subunit B [Neisseria gonorrhoeae MS11]
 gi|268604099|ref|ZP_06138266.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID1]
 gi|268682557|ref|ZP_06149419.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID332]
 gi|268684718|ref|ZP_06151580.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|268686997|ref|ZP_06153859.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|293398679|ref|ZP_06642857.1| topoisomerase IV subunit B [Neisseria gonorrhoeae F62]
 gi|193934388|gb|ACF30212.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|268548613|gb|EEZ44031.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02]
 gi|268551228|gb|EEZ46247.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19]
 gi|268583743|gb|EEZ48419.1| topoisomerase IV subunit B [Neisseria gonorrhoeae MS11]
 gi|268588230|gb|EEZ52906.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID1]
 gi|268622841|gb|EEZ55241.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID332]
 gi|268625002|gb|EEZ57402.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|268627281|gb|EEZ59681.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|291611150|gb|EFF40247.1| topoisomerase IV subunit B [Neisseria gonorrhoeae F62]
 gi|317164652|gb|ADV08193.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 661

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/676 (32%), Positives = 338/676 (50%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KR+G ++ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAQLDI 661


>gi|313667941|ref|YP_004048225.1| topoisomerase IV subunit B [Neisseria lactamica ST-640]
 gi|313005403|emb|CBN86837.1| topoisomerase IV subunit B [Neisseria lactamica 020-06]
          Length = 661

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 220/676 (32%), Positives = 336/676 (49%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+S  E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVQIHEDGSLSVHDNGRGIPVGLHPEEGVSVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E R  T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEARTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W          + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLGEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|240116103|ref|ZP_04730165.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID18]
 gi|260440087|ref|ZP_05793903.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2]
 gi|268601769|ref|ZP_06135936.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID18]
 gi|291043375|ref|ZP_06569098.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2]
 gi|268585900|gb|EEZ50576.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID18]
 gi|291012981|gb|EFE04964.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2]
          Length = 661

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 220/676 (32%), Positives = 339/676 (50%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+  AE++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVAELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KR+G ++ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAQLDI 661


>gi|261399940|ref|ZP_05986065.1| DNA topoisomerase IV, B subunit [Neisseria lactamica ATCC 23970]
 gi|269210391|gb|EEZ76846.1| DNA topoisomerase IV, B subunit [Neisseria lactamica ATCC 23970]
          Length = 661

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/676 (32%), Positives = 336/676 (49%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVHDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E R  T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSISELERLLRAKAVLLPGVRVSLTRPVKGEDEARTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|59801683|ref|YP_208395.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA 1090]
 gi|59718578|gb|AAW89983.1| putative DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA
           1090]
          Length = 661

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 219/676 (32%), Positives = 338/676 (50%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KR+G ++ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAVGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAQLDI 661


>gi|282862334|ref|ZP_06271396.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
 gi|282562673|gb|EFB68213.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
          Length = 708

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 238/684 (34%), Positives = 349/684 (51%), Gaps = 48/684 (7%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I 
Sbjct: 21  ESSNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDAIE 79

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           V L+ D S  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG 
Sbjct: 80  VILHDDASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGA 139

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL-----DNPLV--------VTGS--AGNDTG 170
           SVVNALS+ L + + R    + +SF  G+        P            G       TG
Sbjct: 140 SVVNALSARLDVEVDRNSTTHSISFRRGVPGMFTEQGPDSPFDPANGLRKGKRIPKTRTG 199

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK---RSPEPREITMFYK 226
           T V +     IF      + +TL  R R+ +FL   + I + D+         E T  + 
Sbjct: 200 TRVRYWADRQIFLKDAKLDLETLYQRARQTAFLVPGLTIVVRDERGINGEGKTEETFRFD 259

Query: 227 GGIEAFVSYLDRHK----------KPLMQSPIRIQGSRDNIS---------IDLAMRWND 267
           GGI  F  YL + K              +  + +   R +++         +D+A+RW  
Sbjct: 260 GGISEFCEYLAQDKAVCDVQRLTGTGTFKETVPVLDDRGHMTATEVTRELGVDIALRWGT 319

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY   V  F N I    GGTH+SG   +LT+ +   +  +   +  +  V+ DD  EG T
Sbjct: 320 GYDTTVRSFVNIIATPKGGTHVSGFERSLTKTVNEALRSTKLLRVAEDDVVKDDALEGLT 379

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVL 383
           +V+++++ +P+F  QTKE L +S    +V + V   L A+L     +AK     ++ K +
Sbjct: 380 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKAV 439

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            A+  R AAR+ +D  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R
Sbjct: 440 AAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLAR 499

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           + E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY K+I+M
Sbjct: 500 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKVIMM 558

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESL 559
           TDADVDG+HIRTLLLT F R M  ++  G ++   PPL+ I     +    +Y+      
Sbjct: 559 TDADVDGSHIRTLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYIYTYSDN 618

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           E       L  +     DS          +    A              +   +E +   
Sbjct: 619 ELRQTLLELQRKNVRVKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINIGDLESSEQV 678

Query: 620 GVFNCESDQEINVSLASKLANRLN 643
                 ++        +  A  L+
Sbjct: 679 FDLLMGNEVAPRKEFITSSAATLD 702



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              I       L  T+  + RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 609 DKYIYTYSDNELRQTLLELQRKNVRVKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 668

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   ++ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 669 IGDLESSEQVFDLLMGNEVAPRKEFITSSA--ATLD 702


>gi|261380858|ref|ZP_05985431.1| DNA topoisomerase IV, B subunit [Neisseria subflava NJ9703]
 gi|284796328|gb|EFC51675.1| DNA topoisomerase IV, B subunit [Neisseria subflava NJ9703]
          Length = 661

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 218/676 (32%), Positives = 338/676 (50%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG ++ + F  G +   L   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKVHRIVFSGGNVIESLTEVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGENETYTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   P+      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFSKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVATVSGDPLELWLNQNVDYGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEKEGD 655



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR ++++    + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEKEGDTAELDI 661


>gi|320008123|gb|ADW02973.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces flavogriseus ATCC
           33331]
          Length = 708

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 240/683 (35%), Positives = 353/683 (51%), Gaps = 48/683 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V
Sbjct: 22  SSNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDTIEV 80

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG S
Sbjct: 81  ILHDDASVEVRDNGRGIPVDVEPKTGLSGIEVVMTKLHAGGKFGGGSYAASGGLHGVGAS 140

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVV-TGSAGNDTGT 171
           VVNALS+ L + + R    + +SF  G+        P         L          TGT
Sbjct: 141 VVNALSARLDVEVDRNSATHAISFRRGVPGMFTEQGPDSPFDPANGLRKGKRVPKTRTGT 200

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---PREITMFYKG 227
            V +     IF      N +TL  R R+ +FL   + I + D+R  +     E T  + G
Sbjct: 201 RVRYWADRQIFLKDAKLNLETLYQRARQTAFLVPGLTIVVRDERGVDGEGKTEETFRFDG 260

Query: 228 GIEAFVSYLDRHK----------KPLMQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  YL + K              +  + +   R +++         +D+A+RW  G
Sbjct: 261 GISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDRGHMTATEVTRELGVDIALRWGTG 320

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y  N+  F N I    GGTH++G   +LT+ +   +  +   +  +  ++ DD  EG T+
Sbjct: 321 YDTNLKSFVNIIATPKGGTHVTGFERSLTKTVNEVLRSAKLLRVAEDDIVKDDALEGLTA 380

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLD 384
           V+++++ +P+F  QTKE L +S    +V + V+  L A+L     +AK     ++ K + 
Sbjct: 381 VVTVRLAEPQFEGQTKEVLGTSAANRIVANVVSKELKAFLTSTKRDAKAQARAVLDKAVA 440

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R+
Sbjct: 441 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARN 500

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY K+I+MT
Sbjct: 501 SEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKVIMMT 559

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDG+HIRTLLLT F R M  ++  G ++   PPL+ I     +    +YV      E
Sbjct: 560 DADVDGSHIRTLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNE 619

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                  L  +   F DS          +    A              +   +E +    
Sbjct: 620 LRQTLLELQRKNVRFKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINIGDLESSEQIF 679

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                ++        +  A  L+
Sbjct: 680 DLLMGNEVAPRKEFITSSAATLD 702



 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+  + RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 609 DKYVYTYSDNELRQTLLELQRKNVRFKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 668

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   ++ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 669 IGDLESSEQIFDLLMGNEVAPRKEFITSSA--ATLD 702


>gi|329123547|ref|ZP_08252110.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus aegyptius
           ATCC 11116]
 gi|327470363|gb|EGF15821.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus aegyptius
           ATCC 11116]
          Length = 632

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 228/644 (35%), Positives = 341/644 (52%), Gaps = 21/644 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L +        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +    N ++  A +   +G       + N IP   GGTH++GLR  L   I  + 
Sbjct: 236 KPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D  
Sbjct: 296 EFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +K
Sbjct: 355 SLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEK 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDKL 600
              K + Y  DE   E     +     +         G ++ + LR    D    ++ +L
Sbjct: 530 DLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQL 589

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 590 TYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            ++LD + +  +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 545 EAILDRLKN--KKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|293390334|ref|ZP_06634668.1| DNA topoisomerase IV, B subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950868|gb|EFE00987.1| DNA topoisomerase IV, B subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 632

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 224/646 (34%), Positives = 323/646 (50%), Gaps = 20/646 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A+ I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE L G+A  I V
Sbjct: 2   TTNYSANEITVLKDLEPVQLRPGMY---TDTTRP-NHLAQEVIDNSVDEVLAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRG+P D+H  E +S  EVIM++LHAGGKF+ K+Y  SGGLHGVG+S
Sbjct: 58  ILHKDQSIEVIDNGRGMPVDIHPVEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + + +KR G +Y+++F NG     L V        TGT V F P+   F  +
Sbjct: 118 VVNALSERVDVTVKRNGEVYKIAFENGKKVEDLTVIGTCGRRTTGTTVHFKPNPKYFDSE 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  ID  +                  +       P   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDNVNDTEDTWLYQDGLNDYLMEAVNGLVTLPEQP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G ++ +S    +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGEFNGEKEAVSW-ALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  DD  +    VLS+KM DP+F+ QTKE+L S +    +   V D  S
Sbjct: 297 FRNLLPRG-VKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAVFIGGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++  +A+++    + ++       RA     RK ++   +LPGKLADCS +D   +
Sbjct: 356 LWLNQNIQQAELLADMAISSAQ---RRLRAAKKVIRKKLVSGPALPGKLADCSSQDINFT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      +++L+SQE+  +  A+  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPEQVLASQEVHDI--AVALGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
             D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P L+  G +Y+  PPLY I 
Sbjct: 471 DPDNSDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVELGHVYVAMPPLYRID 530

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            GK + Y  DE   E  L               K  + +      ++     +  +    
Sbjct: 531 LGKEVFYALDESEKEAILDRLKGK-------KGKPNVQRFKGLGEMNPMQLRETTMDPNT 583

Query: 606 PNHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAEKSE 650
               +   E          E+    +    A    N L    ++ +
Sbjct: 584 RRLVQLTFEAQSEEKRETIETMDMLLAKKRAEDRKNWLQAKGDQVD 629



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            ++LD +   G+KG  ++QR+KGLGEMN  QL ETT++P+TR L+++   
Sbjct: 545 EAILDRLK--GKKGKPNVQRFKGLGEMNPMQLRETTMDPNTRRLVQLTFE 592


>gi|260583321|ref|ZP_05851095.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae NT127]
 gi|260093634|gb|EEW77548.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae NT127]
          Length = 632

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/644 (35%), Positives = 341/644 (52%), Gaps = 21/644 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L V        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +    N ++  A +   +G       + N IP   GGTH++GLR  L   I  + 
Sbjct: 236 KPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D  
Sbjct: 296 EFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +K
Sbjct: 355 SLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEK 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDKL 600
              K + Y  DE   E     +     +         G ++ + LR    D    ++ +L
Sbjct: 530 DLNKEVFYALDESEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQL 589

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 590 TYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 8/55 (14%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            LD             +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 538 ALDESEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|256390961|ref|YP_003112525.1| DNA topoisomerase IV subunit B [Catenulispora acidiphila DSM 44928]
 gi|256357187|gb|ACU70684.1| DNA topoisomerase (ATP-hydrolyzing) [Catenulispora acidiphila DSM
           44928]
          Length = 709

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 225/655 (34%), Positives = 334/655 (50%), Gaps = 55/655 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           ++ SY A  + +L+GLDAV+KRP MYIG  +   GL H ++E++DN++DE+L G+ D I 
Sbjct: 13  KDGSYTARHLLVLEGLDAVRKRPGMYIGS-NDGRGLMHCLWEIIDNSVDEALAGFGDKIE 71

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           + L+ DGS  V D GRGIP D+  + G+S  EV+MT LHAGGKF   SY  SGGLHGVG 
Sbjct: 72  IILHKDGSAEVRDTGRGIPVDVEPKTGLSGVEVVMTMLHAGGKFGGGSYAASGGLHGVGA 131

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL--------------DNPLVVTGSAGN---- 167
           SVVNALSS + + + R G ++ MSF  GI               ++ L   G        
Sbjct: 132 SVVNALSSRVDMEVDRAGTVHAMSFQRGIPGVFADEGPEAKFKAESGLRKVGKVSRALVP 191

Query: 168 ---------DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
                     TGT   F P   IF    +F  + L  R R+ +FL   + I ++D+R  +
Sbjct: 192 KSADGRRAAPTGTRTRFWPDRQIFLKDAEFVLEDLHARARQTAFLVPGLTIRVVDERDGK 251

Query: 218 PREITMFYKGGIEAFVSYLDRHK----------KPLMQSPIRIQGSRDNIS--------- 258
             E    Y GGI  FV +L   +                 + +   + +++         
Sbjct: 252 QDEEIFSYAGGISEFVEFLAPDRPITDTLRFTGSGKFTETVPVLDEQGHMTPADIERELF 311

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +D+A+RW   Y   +  F N I    GGTHL G    L +     +  +   K +   VI
Sbjct: 312 VDVALRWGTEYDTVIRSFVNIIATPKGGTHLVGFGKGLLKAANEQLRATKLLKVNDDDVI 371

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI- 377
            +D  EG T+V+++++ +P+F  QTKE L +     +V   V++    +L       K  
Sbjct: 372 REDVFEGLTAVVTVRLAEPQFEGQTKEVLGTPAANRIVTRVVDNAFKEFLTSAKRNDKPM 431

Query: 378 ---IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
              +++K+ +A+  R  AR+ ++  RRK  L+ ++LP KLADC   D  +SE+F++EGDS
Sbjct: 432 ARGVLEKIANAARTRITARQHKEAQRRKNALETSALPAKLADCRSDDVDRSEMFIIEGDS 491

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           A GSAK  R+ E QA+LP+RGKILNV+++    ML + E   +I  +G G G+  FDI++
Sbjct: 492 AMGSAKAARNSEFQALLPIRGKILNVQKSSIADMLKNTECAAIIQVVGAGSGRS-FDIDQ 550

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
            RY K+I+M DADVDG+HIR LLLT F R M  ++  G +Y   PPL+ I    + +   
Sbjct: 551 ARYGKVILMADADVDGSHIRCLLLTLFHRYMRPMLEAGRVYAAVPPLHRIEVIGAGR--A 608

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
             E +  Y  N+      EL    K +         + +            P H 
Sbjct: 609 KNEFIYTYSDNEMRRTVAELLKKGKRIKEPIQRYKGLGEMDADQLAETTMDPRHR 663



 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 723 LDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +  +   G++    +QRYKGLGEM+A QL ETT++P  R+L R+ + D   AD  F  LM
Sbjct: 625 VAELLKKGKRIKEPIQRYKGLGEMDADQLAETTMDPRHRTLRRITVADGESADKAFDLLM 684

Query: 782 GDEVEPRREFIQENSLPSALD 802
           G++V PRREFI  ++  + LD
Sbjct: 685 GNDVAPRREFIINSA--AVLD 703


>gi|319897148|ref|YP_004135343.1| DNA topoisomerase iv, subunit b [Haemophilus influenzae F3031]
 gi|317432652|emb|CBY81015.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae F3031]
          Length = 632

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 228/644 (35%), Positives = 340/644 (52%), Gaps = 21/644 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L +        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFEILPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +    N ++  A +   +G       + N IP   GGTH++GLR  L   I  + 
Sbjct: 236 KPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D  
Sbjct: 296 EFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +K
Sbjct: 355 SLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEK 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDKL 600
              K + Y  DE   E     +     +         G ++ + LR    D    ++ +L
Sbjct: 530 DLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQL 589

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             D         +E   +  +   +   E   +      ++++ 
Sbjct: 590 TYDLGEEQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            ++LD + +  +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 545 EAILDRLKN--KKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|309378433|emb|CBX22928.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 661

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 216/598 (36%), Positives = 318/598 (53%), Gaps = 31/598 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  L   + L   V++SL    K   E R  T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSISELERLLCAKAVLLPGVRVSLTRPVKGEDEARTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I      +GV
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGILERLQKEGV 584



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--Q 772
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I++ +  +
Sbjct: 570 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQISEGADDE 629

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
             D+F +LMG  E   RR +++     + LDI
Sbjct: 630 TRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|325142847|gb|EGC65215.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis 961-5945]
          Length = 661

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 220/676 (32%), Positives = 339/676 (50%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   P+      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEESSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   +++++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|319776382|ref|YP_004138870.1| DNA topoisomerase IV subunit B [Haemophilus influenzae F3047]
 gi|317450973|emb|CBY87202.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae F3047]
          Length = 632

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 228/644 (35%), Positives = 341/644 (52%), Gaps = 21/644 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L +        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +    N ++  A +   +G       + N IP   GGTH++GLR  L   I  + 
Sbjct: 236 KPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D  
Sbjct: 296 EFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +K
Sbjct: 355 SLWLNQNVQDAEKLTEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEK 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDKL 600
              K + Y  DE   E     +     +         G ++ + LR    D    ++ +L
Sbjct: 530 DLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQL 589

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 590 TYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            ++LD + +  +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 545 EAILDRLKN--KKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|218662159|ref|ZP_03518089.1| DNA gyrase subunit B [Rhizobium etli IE4771]
          Length = 356

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 232/350 (66%), Positives = 297/350 (84%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++N  ++ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 7   TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           DI+TV+LN DGS TV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 67  DIVTVSLNPDGSVTVTDNGRGIPTDIHSGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PL VTG A ++TGTEV+F+PSS+ 
Sbjct: 127 GVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGEAPDETGTEVSFMPSSET 186

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV+YLDR KK
Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELRYDGGLEAFVAYLDRAKK 246

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ 
Sbjct: 247 SLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           SY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSE
Sbjct: 307 SYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSE 356


>gi|121635323|ref|YP_975568.1| DNA topoisomerase IV subunit B [Neisseria meningitidis FAM18]
 gi|161870530|ref|YP_001599702.1| DNA topoisomerase IV subunit B [Neisseria meningitidis 053442]
 gi|120867029|emb|CAM10792.1| topoisomerase IV subunit B [Neisseria meningitidis FAM18]
 gi|161596083|gb|ABX73743.1| topoisomerase IV subunit B [Neisseria meningitidis 053442]
 gi|325132822|gb|EGC55502.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M6190]
 gi|325134784|gb|EGC57421.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M13399]
 gi|325138725|gb|EGC61277.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis ES14902]
 gi|325198780|gb|ADY94236.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis G2136]
          Length = 661

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 220/676 (32%), Positives = 339/676 (50%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   P+      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   +++++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|296313483|ref|ZP_06863424.1| DNA topoisomerase IV, B subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296840002|gb|EFH23940.1| DNA topoisomerase IV, B subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 661

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 217/676 (32%), Positives = 334/676 (49%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MTKKTQ---YSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH  EG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATEIDVRIHDDGSLSVHDNGRGIPVGLHPVEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG ++ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKVHRIVFAGGDVIEPLTEVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E R  T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEARTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   P+      I    +           A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 529

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 530 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 580

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  +R       +    + +  P+  K          +   +  +  +          + 
Sbjct: 581 KEGVRETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMG 639

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 640 KGEAAARRAWMEREGD 655



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G +    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 570 NELDSILERLQKEGVRETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 628

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 629 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 661


>gi|332973042|gb|EGK10979.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Kingella kingae ATCC
           23330]
          Length = 658

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 221/666 (33%), Positives = 338/666 (50%), Gaps = 32/666 (4%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y   SI++LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+A  I V +
Sbjct: 6   AYSESSIKVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGFATQIDVAI 61

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS----YKVSGGLHGVG 124
           + DGS +V DNGRGIPT LH  E I   E++ T+LHAGGKFN+KS    Y  SGGLHGVG
Sbjct: 62  HADGSLSVRDNGRGIPTGLHPIEQIPVVELVFTQLHAGGKFNKKSGNGAYAFSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183
           VSV NALS+ L++ +KREG I  + F  G +  PL   G     DTGTEV   P +  F 
Sbjct: 122 VSVTNALSTRLEVTVKREGKISRIVFSGGDVVEPLAQIGKCAAKDTGTEVRVYPDAKYFE 181

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK-- 241
             +++   L+  LR  + L   V ++L  +    P + T  Y  G+ ++++ L  + +  
Sbjct: 182 NPNYSIGELERLLRAKAVLLQGVTVTLTREIKGLPEKQTWHYPQGLRSYLADLLENAQEA 241

Query: 242 -PLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            P+  +   I GS D+         A+ W +        + N IP   GGTH +GL+ A 
Sbjct: 242 VPIFATENYISGSHDDFQAGEGAAFALTWLEDGSCANESYVNLIPTPLGGTHEAGLKQAA 301

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
              + +++       +    +  DD       VLS ++ DP+F  QTK+KL + +   +V
Sbjct: 302 FNAVNNFIAHHNLLPRG-VKLQSDDVFSRVAFVLSARVLDPQFQGQTKDKLTNRDALKLV 360

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
            +   D L  WL E+    K I +  +  +  R  + +      +K    +A LPGKL D
Sbjct: 361 AAVSGDPLELWLNENVEFGKKIAELAIRQAQARMRSVKK---IEKKKGSGVAVLPGKLTD 417

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C   D +++ELFLVEGDSAGGSAK  R +  QA+LPLRGK+LN      D++  + EI  
Sbjct: 418 CESEDVRENELFLVEGDSAGGSAKLARDKSFQAVLPLRGKVLNSFEVHRDQLFGNAEIHD 477

Query: 477 LITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           +  A+G        D++   LRY KI I++DADVDG+HI+ LLLT F+R  P L+  G +
Sbjct: 478 ISVAIGIDPHGKDDDVDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPKLVELGHI 537

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           Y+ +PPL+ +      +   ++ + + Y ++Q+  + I    +++ V      R      
Sbjct: 538 YVAQPPLFRVDVNAQGK---NKPTRKLYALDQAELDGILERLNAEKV------RETAYSI 588

Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
            +    + +  P+  K          +       E+  +  S     +      S ++W 
Sbjct: 589 SRFKG-LGEMNPDQLKDTTLHPDTRRLLQVRIPDEMEAATESVFLKLMGKGEASSRRAWM 647

Query: 655 GSINNS 660
               + 
Sbjct: 648 EVEGDK 653



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 8/97 (8%)

Query: 712 DKIKITGPCSLL--DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           D+ ++ G    L  + +        S+ R+KGLGEMN  QL +TTL+PDTR LL+V+I D
Sbjct: 565 DQAELDGILERLNAEKVRETA---YSISRFKGLGEMNPDQLKDTTLHPDTRRLLQVRIPD 621

Query: 770 ASQA--DDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
             +A  + +F +LMG  E   RR +++        DI
Sbjct: 622 EMEAATESVFLKLMGKGEASSRRAWMEVEGDKVEGDI 658


>gi|94983851|gb|ABF50630.1| DNA topoisomerase IV subunit B [Spiroplasma cantharicola]
          Length = 555

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/560 (40%), Positives = 336/560 (60%), Gaps = 13/560 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L G    I V++  DGS TV DNGRG+P   +K   
Sbjct: 1   GSTDS-RGLHHLVWEIVDNSIDEALAGVCSEINVSIEKDGSVTVKDNGRGVPIGSYKGTS 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  E+I + LHAGGKF    YK SGGLHGVG SVVNALSS  K+ I R+G I ++ F +
Sbjct: 60  QSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVIIHRDGLISQIKFAH 119

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G L + L   G     TGT V FLP   +FS   F++ T+  RL+E + LNS ++++L 
Sbjct: 120 GGKLVDQLKQIG-TSKQTGTTVNFLPDETMFSTTKFSFSTISERLKESALLNSGLKLTLK 178

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +   +   Y+ G+  FV+ L   +K L    + ++GS  NI +++A+ +   + E
Sbjct: 179 DNRSDK--YVEYLYENGLTEFVNELRGDQKALCSPIM-LKGSEQNIDVEIALTYTTDFSE 235

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            VL F NN+   DGGTHL+G R+ + + +  Y +     K+  + +   D +EG  ++++
Sbjct: 236 TVLGFANNVKTSDGGTHLTGFRTGMVKALNEYGKTQSILKEKDKKLDSSDIKEGLIAIVT 295

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +K+P+   ++  QTK KL +SE +   E    +  S WL+E+   A  I++K L A   +
Sbjct: 296 VKIPESLIQYEGQTKGKLGTSEAKYACEKVTEEHFSFWLQENKTIAISIIEKALLARRAK 355

Query: 390 DAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           + AR+AR   R +K      ++ GKL     ++ +++EL+LVEGDSAGGSAK GR R+ Q
Sbjct: 356 EEARKARQAVRDQKSKSKSRTMLGKLTPAQGKNKQENELYLVEGDSAGGSAKSGRDRKFQ 415

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+ +   +L ++EI T+I A+G GIG D FDI+ + Y KII+MTDAD 
Sbjct: 416 AILPLRGKVINAEKTKLIDLLKNEEITTIINAIGAGIGSD-FDISDINYGKIILMTDADT 474

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLIN 565
           DGAHI+TLLLTFF+R M  LI N  +YI  PPL+ IT     K   Y+  EE L  ++  
Sbjct: 475 DGAHIQTLLLTFFYRYMKELIVNKNIYIAMPPLFKITTGSNKKDFMYLWTEEELASHMKK 534

Query: 566 QSLSEEIELFCDSKGVISKN 585
                EI+ +     + +  
Sbjct: 535 TKAKIEIQRYKGLGEMNADQ 554



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 2/132 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  + I++    ++   +N I       +  S  N   ++           +    
Sbjct: 424 VINAEKTKLIDLLKNEEITTIINAIGAGIGSDFDISDINYGKIILMTDADTDGAHIQTLL 483

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP--CSLLDTIFSIGRKGISMQR 738
             F +    + I +  I      +  +    +K           L +     +  I +QR
Sbjct: 484 LTFFYRYMKELIVNKNIYIAMPPLFKITTGSNKKDFMYLWTEEELASHMKKTKAKIEIQR 543

Query: 739 YKGLGEMNASQL 750
           YKGLGEMNA QL
Sbjct: 544 YKGLGEMNADQL 555


>gi|326332699|ref|ZP_08198962.1| DNA gyrase subunit B [Nocardioidaceae bacterium Broad-1]
 gi|325949527|gb|EGD41604.1| DNA gyrase subunit B [Nocardioidaceae bacterium Broad-1]
          Length = 730

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 228/598 (38%), Positives = 330/598 (55%), Gaps = 47/598 (7%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           I +++Y+A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN +DE+L G A  +
Sbjct: 45  ISDNTYNAAHLLVLEGLEAVRKRPGMYIGSTD-TRGLMHCLWEIIDNGVDEALAGVAGHV 103

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VT++ DGS  V D+GRGIPTD     G+   EV+ T+LHAGGKF   SY  +GGLHGVG
Sbjct: 104 EVTMHPDGSVEVYDDGRGIPTDKEPRTGLPGVEVVATKLHAGGKFGGGSYNATGGLHGVG 163

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVVTGS--AGND 168
           +SVVNALSS + + + R      MSF  G+                + L   G   A   
Sbjct: 164 LSVVNALSSRMDIDVDRSPAQQGMSFRRGVPGVFDGDGPTAGFTPQSGLSRKGKRVAKGK 223

Query: 169 TGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT V F P   IF     F  + L  R R+ SF+   +++ + D    +P E    + G
Sbjct: 224 TGTRVRFWPDRQIFTKDARFELEGLLGRARQTSFIVPGLELVIRDLSGADPVEEKFRHDG 283

Query: 228 GIEAFVSYLDRHKK-----------------PLMQSPIRI--QGSRDNISIDLAMRWNDG 268
           GI  FV +L + +                  P++     +  Q     + +D+A+RW  G
Sbjct: 284 GIAEFVDFLAKDEPVSGVLRLQGSDTFTETVPMLDDAGHMTPQDVERELGVDIAVRWGSG 343

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   +  F N I    GGTH+SG  +ALT+     +  +   K + + ++ +D  EG T+
Sbjct: 344 YDTEIRSFVNVIATPKGGTHVSGFENALTKTFNDAMRAAKVLKVNDKDIVKEDVLEGLTA 403

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI----IVKKVLD 384
           V+++++ +P+F  QTKE L +   RSVV   V   +  +L E     K     +++KV  
Sbjct: 404 VVTVRLAEPQFEGQTKEILGTPAARSVVRKVVAAEMKTFLTESRGAQKQQAKLVMEKVYA 463

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           AS  R + R+ ++  RRK  L+ ++LP KLADC   D  ++ELF+VEGDSA G+AK  R+
Sbjct: 464 ASKTRLSLRQQKENQRRKNALESSALPSKLADCRTTD-DRAELFIVEGDSALGTAKVARN 522

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV++A    ML + E  ++I  +GTG G+  FD++  RY KII M 
Sbjct: 523 SEFQALLPIRGKILNVQKASVGDMLKNAECSSIIQVVGTGTGRS-FDLDAARYGKIIFMA 581

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEES 558
           DAD DGAHIRTLL T FF+ MP LI  G +Y   PPL+ I     +    +Y+     
Sbjct: 582 DADSDGAHIRTLLATLFFKYMPELIAAGKVYTAVPPLHRIEISNPKKGMEKYIYTYSD 639



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              I       L   +  + +K +S    +QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 631 EKYIYTYSDPELQRKLAELKKKNVSWKDPVQRYKGLGEMDADQLAETTMDPRHRTLRRLT 690

Query: 767 ITDASQADDLFSRLMGDEVEPRREFI 792
           + DA  A  +F  LMG EV PR+EFI
Sbjct: 691 LDDADAAAAVFDLLMGSEVAPRKEFI 716


>gi|21224166|ref|NP_629945.1| DNA topoisomerase IV subunit B [Streptomyces coelicolor A3(2)]
 gi|256784752|ref|ZP_05523183.1| DNA topoisomerase IV subunit B [Streptomyces lividans TK24]
 gi|289768639|ref|ZP_06528017.1| DNA topoisomerase IV subunit B [Streptomyces lividans TK24]
 gi|3036887|emb|CAA18520.1| putative DNA gyrase subunit B [Streptomyces coelicolor A3(2)]
 gi|289698838|gb|EFD66267.1| DNA topoisomerase IV subunit B [Streptomyces lividans TK24]
          Length = 707

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 231/683 (33%), Positives = 346/683 (50%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIEVI 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   +Y  SGGLHGVG SV
Sbjct: 80  LHDDASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGAYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDN--------------PLVVTGS-AGNDTGTE 172
           VNALS+ L + +   G+ + +SF  G+                  L        +  GT 
Sbjct: 140 VNALSARLDIEVDLGGHTHAISFRRGVPGTFAKAGPDAKFEAGSGLRKVKKVPKSRRGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V +     IF      + D L  R R+ +FL   + I + D+          E +  + G
Sbjct: 200 VRYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRDEFGLGDGGSKGEESFRFDG 259

Query: 228 GIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  +L   +              +  + +      ++         +D+A+RW  G
Sbjct: 260 GISEFCEFLAGDRPVCDVLRFSGQGSFKETVPVLDEDGQMTPSEVTRDLGVDVALRWGTG 319

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   V  F N I    GGTH++G   A+ + +   +      +  +  ++ DD  EG T+
Sbjct: 320 YDTTVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKKMLRVAEDDIVKDDALEGLTA 379

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP----LEAKIIVKKVLD 384
           V+++++ +P+F  QTKE L +S  R +V + ++  L A+L         +A+++++K + 
Sbjct: 380 VVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISRELKAFLTSTKRDAAQQARVVMEKAVA 439

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+
Sbjct: 440 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARN 499

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KII+MT
Sbjct: 500 SEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKIIMMT 558

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDG+HIRTLLLT F R M  ++  G ++   PPL+ I     +    +YV      E
Sbjct: 559 DADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDRE 618

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +   + DS          +    A       +      + T ++ A    
Sbjct: 619 LRDKLMEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRRRTLRRINLTDLDSAEQVF 678

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                +D        S  A  L+
Sbjct: 679 DLLMGNDVAPRKEFISSSAATLD 701



 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L D +     K I    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 608 DKYVYTYSDRELRDKLMEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRRRTLRRIN 667

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +TD   A+ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 668 LTDLDSAEQVFDLLMGNDVAPRKEFISSSA--ATLD 701


>gi|229844202|ref|ZP_04464343.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 6P18H1]
 gi|229847154|ref|ZP_04467259.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 7P49H1]
 gi|229809983|gb|EEP45704.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 7P49H1]
 gi|229813196|gb|EEP48884.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 6P18H1]
 gi|309973201|gb|ADO96402.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae R2846]
          Length = 632

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/644 (35%), Positives = 341/644 (52%), Gaps = 21/644 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIKVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L V        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDNA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +    N ++  A +   +G       + N IP   GGTH++GLR  L   I  + 
Sbjct: 236 KPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D  
Sbjct: 296 EFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +K
Sbjct: 355 SLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEK 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDKL 600
              K + Y  DE   E     +     +         G ++ + LR    D    ++ +L
Sbjct: 530 DLNKEVFYALDESEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQL 589

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 590 TYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 8/55 (14%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            LD             +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 538 ALDESEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|194339091|gb|ACF49461.1| GyrB [Amycolatopsis nigrescens]
          Length = 463

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 208/457 (45%), Positives = 291/457 (63%), Gaps = 14/457 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH+I EV+DN++DE++ GYA  I VTL  DG   V D+GRGIP  +H  E     EV++T
Sbjct: 1   HHLIQEVVDNSVDEAMAGYASKIEVTLLADGGVRVVDDGRGIPVAMHPVENKPTLEVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           +LHAGGKF+ +SY VSGGLHGVGVSVVNALS+ L + I  EG I+   +       P+  
Sbjct: 61  QLHAGGKFDGESYAVSGGLHGVGVSVVNALSTRLDVEIHLEGKIWTQRYEMSEPVAPVQE 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G     TGT +TF    +IF    +N +T+  RL+E++FLN  + I L D+R  E    
Sbjct: 121 QGPTS-KTGTTITFWADPEIFETTTYNAETISRRLQEMAFLNKGLTIVLRDERVAEEETE 179

Query: 222 T-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                           Y GG+E FV +++  K P+ Q+ +      D + +++AM+WN+G
Sbjct: 180 EDAGGQTARVKERVYHYPGGLEDFVRHINGSKDPIHQTVVSFDAKGDGLEVEVAMQWNNG 239

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +
Sbjct: 240 FTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDTNLTGDDVREGLAA 299

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE +S V++  N+ L+ W E +P EAKI++ K + ++  
Sbjct: 300 IVSIKLAEPQFEGQTKTKLGNSEAKSFVQTKTNEWLADWFERNPTEAKIVINKAVSSAQA 359

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRKG LDI  LPGKL DC    P++ EL++VEGDSAGGSAK+GR    Q
Sbjct: 360 RMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQ 419

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           AILP+RGKI+NVE+AR D++L + E+ +LITALGTGI
Sbjct: 420 AILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI 456


>gi|145629698|ref|ZP_01785494.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.1-21]
 gi|144978035|gb|EDJ87814.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.1-21]
          Length = 617

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 221/563 (39%), Positives = 316/563 (56%), Gaps = 14/563 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L +        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +    N ++  A +   +G       + N IP   GGTH++GLR  L   I  + 
Sbjct: 236 KPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D  
Sbjct: 296 EFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +K
Sbjct: 355 SLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEK 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQS 567
              K + Y  DE   E  L    
Sbjct: 530 DLNKEVFYALDENEKEAILDRLK 552



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            ++LD + +  +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 545 EAILDRLKN--KKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|290490548|dbj|BAI79261.1| DNA gyrase subunit B [Tomitella biformata]
 gi|290490550|dbj|BAI79262.1| DNA gyrase subunit B [Tomitella biformata]
          Length = 502

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 226/504 (44%), Positives = 318/504 (63%), Gaps = 35/504 (6%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           GE GLHH+++EV+DN+IDE++ GYA  + V+L  DG+  VSD+GRGIP ++H E G    
Sbjct: 3   GERGLHHLVWEVVDNSIDEAMAGYASAVHVSLLDDGAVQVSDDGRGIPVEMH-ESGAPTV 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           +V+MT+LHAGGKF+ +SY VSGGLHGVG+SVVNALS+ +++ I R+G  ++ +F N +  
Sbjct: 62  QVVMTQLHAGGKFDSESYAVSGGLHGVGISVVNALSTKVEVDIARDGYNWKQNFNNAVP- 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS- 215
            PL   G     TGT V F     IF    ++++T+  RL+E++FLN  + I+L D+R  
Sbjct: 121 EPLEQDGPTS-ATGTTVRFWADPTIFETTTYDFETVSRRLQEMAFLNKGLTITLTDERVT 179

Query: 216 ------------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
                                         P  ++ T  Y GG+  +V +++R K+ +  
Sbjct: 180 ADEITDEVVGDVAEAPKSAEEQAEETKAAKPRVKQRTYHYPGGLVDYVKHINRTKQAIHT 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           + I          +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +
Sbjct: 240 TIIGFNAKGTGHEVEVAMQWNAGYSESVHTFANTINTAEGGTHEEGFRSALTTTVNKYAK 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           +    K    ++ GDD REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ + 
Sbjct: 300 EKKLLKDKDPNLTGDDIREGLAAVVSVKVVEPQFEGQTKTKLGNTEVKSFVQRACNEHID 359

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            W E +P EAK+IV K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP K 
Sbjct: 360 YWFEANPAEAKVIVTKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSNDPSKC 419

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI
Sbjct: 420 EVYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI 479

Query: 486 GQDSFDINKLRYHKIIIMTDADVD 509
             D FDI KLRYHKI++M DADVD
Sbjct: 480 -HDEFDIAKLRYHKIVLMADADVD 502


>gi|254391061|ref|ZP_05006269.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC
           27064]
 gi|326443881|ref|ZP_08218615.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC
           27064]
 gi|197704756|gb|EDY50568.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC
           27064]
          Length = 705

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 232/682 (34%), Positives = 348/682 (51%), Gaps = 48/682 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 20  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIEVI 78

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 79  LHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 138

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-----DNPLV--------VTGS--AGNDTGTE 172
           VNALS+ L + + R G+ + +SF  G+        P            G       TGT 
Sbjct: 139 VNALSARLDVEVDRNGSTHAISFRRGVPGIFTEQGPDAPFDPANGLRKGKRVPKTRTGTR 198

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---PEPREITMFYKGG 228
           V +     IF        +TL  R R+ +FL   + I + D+R        +    + GG
Sbjct: 199 VRYWTDRQIFLKEARLALETLHQRARQTAFLVPGLTIVVRDERDLAGEGKSQEIFRFDGG 258

Query: 229 IEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDGY 269
           I  F  YL + K              +  + +   R +++         +D+A+RW  GY
Sbjct: 259 ISEFCEYLAQDKAVCDVLRLTGQGTFKETVPVLDDRGHMTPTEVTRELGVDIALRWGTGY 318

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
              V  F N I    GGTH++G   ++T+ +   +  +   +  +  ++ DD  EG T+V
Sbjct: 319 DTAVRSFVNIIATPKGGTHVTGFERSVTKTVNEVLRSAKLLRVAEDDIVKDDALEGLTAV 378

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDA 385
           +++++ +P+F  QTKE L +S    +V + V   L A+L     +AK     +++K + A
Sbjct: 379 VTVRLAEPQFEGQTKEVLGTSAANRIVSNVVARELKAFLTSTKRDAKAQARAVLEKAVAA 438

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ ++  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R+ 
Sbjct: 439 ARTRIAARQHKEAQRRKTALETSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARNS 498

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FD++  RY KI+++ D
Sbjct: 499 EFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDLDAARYGKIVLLVD 557

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLED 561
           ADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      E 
Sbjct: 558 ADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNEL 617

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                    +   + DS          +    A              +   ++ A     
Sbjct: 618 RQTLLEFQRKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINIGDLDAAEQVFD 677

Query: 622 FNCESDQEINVSLASKLANRLN 643
               ++        +  A  L+
Sbjct: 678 LLMGNEVAPRKEFITSSAATLD 699



 Score =  133 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+    RKG+    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 606 DKYVYTYSDNELRQTLLEFQRKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 665

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   A+ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 666 IGDLDAAEQVFDLLMGNEVAPRKEFITSSA--ATLD 699


>gi|301170268|emb|CBW29873.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae 10810]
          Length = 632

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/644 (35%), Positives = 341/644 (52%), Gaps = 21/644 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHTDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G IY+++F NG     L +        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +    N ++  A +   +G       + N IP   GGTH++GLR  L   I  + 
Sbjct: 236 KPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D  
Sbjct: 296 EFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +K
Sbjct: 355 SLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEK 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I
Sbjct: 470 IDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDKL 600
              K + Y  DE   E     +     +         G ++ + LR    D    ++ +L
Sbjct: 530 DLNKEVFYALDESEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQL 589

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
             D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 590 TYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 8/55 (14%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            LD             +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 538 ALDESEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|294815531|ref|ZP_06774174.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC
           27064]
 gi|294328130|gb|EFG09773.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC
           27064]
          Length = 739

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 232/682 (34%), Positives = 348/682 (51%), Gaps = 48/682 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 54  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIEVI 112

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 113 LHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 172

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-----DNPLV--------VTGS--AGNDTGTE 172
           VNALS+ L + + R G+ + +SF  G+        P            G       TGT 
Sbjct: 173 VNALSARLDVEVDRNGSTHAISFRRGVPGIFTEQGPDAPFDPANGLRKGKRVPKTRTGTR 232

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---PEPREITMFYKGG 228
           V +     IF        +TL  R R+ +FL   + I + D+R        +    + GG
Sbjct: 233 VRYWTDRQIFLKEARLALETLHQRARQTAFLVPGLTIVVRDERDLAGEGKSQEIFRFDGG 292

Query: 229 IEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDGY 269
           I  F  YL + K              +  + +   R +++         +D+A+RW  GY
Sbjct: 293 ISEFCEYLAQDKAVCDVLRLTGQGTFKETVPVLDDRGHMTPTEVTRELGVDIALRWGTGY 352

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
              V  F N I    GGTH++G   ++T+ +   +  +   +  +  ++ DD  EG T+V
Sbjct: 353 DTAVRSFVNIIATPKGGTHVTGFERSVTKTVNEVLRSAKLLRVAEDDIVKDDALEGLTAV 412

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDA 385
           +++++ +P+F  QTKE L +S    +V + V   L A+L     +AK     +++K + A
Sbjct: 413 VTVRLAEPQFEGQTKEVLGTSAANRIVSNVVARELKAFLTSTKRDAKAQARAVLEKAVAA 472

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ ++  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R+ 
Sbjct: 473 ARTRIAARQHKEAQRRKTALETSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARNS 532

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FD++  RY KI+++ D
Sbjct: 533 EFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDLDAARYGKIVLLVD 591

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLED 561
           ADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      E 
Sbjct: 592 ADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNEL 651

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                    +   + DS          +    A              +   ++ A     
Sbjct: 652 RQTLLEFQRKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINIGDLDAAEQVFD 711

Query: 622 FNCESDQEINVSLASKLANRLN 643
               ++        +  A  L+
Sbjct: 712 LLMGNEVAPRKEFITSSAATLD 733



 Score =  133 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+    RKG+    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 640 DKYVYTYSDNELRQTLLEFQRKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 699

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   A+ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 700 IGDLDAAEQVFDLLMGNEVAPRKEFITSSA--ATLD 733


>gi|241759917|ref|ZP_04758017.1| DNA topoisomerase IV, B subunit [Neisseria flavescens SK114]
 gi|241319925|gb|EER56321.1| DNA topoisomerase IV, B subunit [Neisseria flavescens SK114]
          Length = 674

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 217/676 (32%), Positives = 336/676 (49%), Gaps = 38/676 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 14  MTKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 66

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH  EG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 67  ATEIDVRIHDDGSLSVHDNGRGIPVGLHPVEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 126

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 127 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRV 186

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 187 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 246

Query: 234 SYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   PL      I    +           A+ W +        + N IP   G
Sbjct: 247 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 306

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   +++++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 307 GTHEAGLKQAVFNAVSNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 365

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 366 KLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 422

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 423 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 482

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 483 DQLFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 542

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+ +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + 
Sbjct: 543 HFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQ 593

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
           K  ++       +    + +  P+  K          +   +  +  +          + 
Sbjct: 594 KEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETHDIFVKLMG 652

Query: 644 FIAEKSEKSWHGSINN 659
                + ++W     +
Sbjct: 653 KGEAAARRAWMEKEGD 668



 Score =  113 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 583 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 641

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR ++++    + LDI
Sbjct: 642 -ETHDIFVKLMGKGEAAARRAWMEKEGDTAELDI 674


>gi|68138733|gb|AAY86007.1| GyrB [Burkholderia cenocepacia]
          Length = 618

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 268/622 (43%), Positives = 384/622 (61%), Gaps = 20/622 (3%)

Query: 139 IKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           ++R+G    M F  G+              +P++VTG    + GTEV F+    IF   +
Sbjct: 1   VRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++ K  L  +
Sbjct: 60  YHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPT 117

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  
Sbjct: 118 VFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITD 177

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  
Sbjct: 178 NEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEE 237

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP K E
Sbjct: 238 FLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCE 297

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG
Sbjct: 298 IYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIG 357

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           ++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY I  
Sbjct: 358 KEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKA 417

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           GK  +++KD+  L  +++  +L     +  ++   IS + L       L    +I     
Sbjct: 418 GKDERHLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIDRLSW 477

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINNSDI 662
            +D   +E AV+ GV    S++E   + A  L   L+  A K+E      +        +
Sbjct: 478 LYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEVRVVPSYDAVREQRAL 536

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
            V+R   G     V++     +   +     +N  +        +      + +    S 
Sbjct: 537 HVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSA 596

Query: 723 LDTIFSIGRKGISMQRYKGLGE 744
           +  + +   + +S QRYKGLGE
Sbjct: 597 MKWLLADAERNVSKQRYKGLGE 618


>gi|311898776|dbj|BAJ31184.1| putative type II topoisomerase [Kitasatospora setae KM-6054]
          Length = 706

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 230/682 (33%), Positives = 345/682 (50%), Gaps = 48/682 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+ D I V 
Sbjct: 21  SDYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGFCDRIDVL 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHQDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFING--------------ILDNPLVVTGS-AGNDTGTE 172
           VNALS+ L + + R G  + +SF  G                 + +   G  A   TGT 
Sbjct: 140 VNALSARLDVEVDRSGATHAISFRRGTPGAYAGEGPDAAFEPGSGMTKRGKFAKTRTGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE---ITMFYKGG 228
           + +     IF      + ++L  R R+ +FL   + I + D+R  E  +    T  Y GG
Sbjct: 200 IRYWADRQIFLKDAKLSLESLHSRARQTAFLVPGLTIVVRDERLTESEQVAEETFRYDGG 259

Query: 229 IEAFVSYLDRHK----------KPLMQSPIRIQGSRDNIS---------IDLAMRWNDGY 269
           I  F  +L   +          +   +  + +     +++         +D+A+RW  GY
Sbjct: 260 ISEFCEFLAPDRPISDVLRLRGEGTFKETVPVLDELGHMTPTEVTRELGVDIALRWGAGY 319

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
                 F N I    GGTH++G    L + +   +  +   +  +  +  DD +EG T+V
Sbjct: 320 DTTQRSFVNIISTPKGGTHVTGFERQLAKTVNEALRAAKLLRVAEDDITKDDAQEGLTAV 379

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDA 385
           +++++ +P+F  QTKE L +S    +V + V   L A+L     + K     +++KV+ A
Sbjct: 380 ITVRLAEPQFEGQTKEVLGTSAANRIVAAVVAKELKAFLTSAKKDEKLQARAVLEKVVAA 439

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ ++  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R+ 
Sbjct: 440 ARTRVAARQHKEAQRRKTALETSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARNS 499

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FDI++ RY K+I M D
Sbjct: 500 EFQALLPIRGKILNVQKASVSDMLKNAECASIIQVIGAGSGRT-FDIDQARYGKVIFMAD 558

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLED 561
           ADVDG+HIRTLLLT F R M  ++  G ++   PPL+ I     +    +Y       E 
Sbjct: 559 ADVDGSHIRTLLLTLFHRYMRPMVEQGRVFAAVPPLHRIELTNPKRGQEKYHYTYSDAEL 618

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                    +   + D           +    A              +   +E A  +  
Sbjct: 619 RRTLLQFQGKGLRWKDPIQRYKGLGEMDADQLAETTMDPRFRILRRINLGDLESAEKTFD 678

Query: 622 FNCESDQEINVSLASKLANRLN 643
               +D           A  L+
Sbjct: 679 LLMGNDVAPRREFIVDSAATLD 700



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
                      L  T+     KG+     +QRYKGLGEM+A QL ETT++P  R L R+ 
Sbjct: 607 EKYHYTYSDAELRRTLLQFQGKGLRWKDPIQRYKGLGEMDADQLAETTMDPRFRILRRIN 666

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           + D   A+  F  LMG++V PRREFI +++  + LD
Sbjct: 667 LGDLESAEKTFDLLMGNDVAPRREFIVDSA--ATLD 700


>gi|239944798|ref|ZP_04696735.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL
           15998]
 gi|239991263|ref|ZP_04711927.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL
           11379]
 gi|291448262|ref|ZP_06587652.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL
           15998]
 gi|291351209|gb|EFE78113.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL
           15998]
          Length = 708

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 237/683 (34%), Positives = 349/683 (51%), Gaps = 48/683 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V
Sbjct: 22  SSNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDQIEV 80

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG S
Sbjct: 81  ILHDDASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGAS 140

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVV-TGSAGNDTGT 171
           VVNALS+ L + + R    + +SF  G+        P         L          TGT
Sbjct: 141 VVNALSARLDVEVDRSSATHSISFRRGVPGMFTEQGPDSPFDPANGLRKGKRVPKTRTGT 200

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---PREITMFYKG 227
            V +     IF      N +TL  R R+ +FL   + I + D+R  +     E T  + G
Sbjct: 201 RVRYWADRQIFLKDAKLNLETLYQRARQTAFLVPGLTIIVRDERGLDGEGKTEETFRFDG 260

Query: 228 GIEAFVSYLDRHK----------KPLMQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  YL + K              +  + +   R +++         +D+A+RW  G
Sbjct: 261 GISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDRGHMTATEVTRELGVDIALRWGTG 320

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   V  F N I    GGTH++G   +LT+ +   +  +   +  +  V+ DD  EG T+
Sbjct: 321 YDTTVRSFVNIIATPKGGTHVTGFERSLTKTVNEALRSAKMLRVAEDDVVKDDALEGLTA 380

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLD 384
           V+++++ +P+F  QTKE L +S    +V + V   L ++L     +AK     +++K + 
Sbjct: 381 VVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKSFLTSTKRDAKAQARAVLEKAVA 440

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+
Sbjct: 441 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARN 500

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY K+I+MT
Sbjct: 501 SEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKVIMMT 559

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDG+HIRTLLLT F R M  ++  G ++   PPL+ I     +    +YV      E
Sbjct: 560 DADVDGSHIRTLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNE 619

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +     +S          +    A              +   +E +    
Sbjct: 620 LRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTMDPRHRTLRRINIGDLESSEQVF 679

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                ++        +  A  L+
Sbjct: 680 DLLMGNEVAPRKEFITSSAATLD 702



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+    RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 609 DKYVYTYSDNELRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 668

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   ++ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 669 IGDLESSEQVFDLLMGNEVAPRKEFITSSA--ATLD 702


>gi|295836120|ref|ZP_06823053.1| DNA gyrase subunit B [Streptomyces sp. SPB74]
 gi|197695215|gb|EDY42148.1| DNA gyrase subunit B [Streptomyces sp. SPB74]
          Length = 707

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 237/684 (34%), Positives = 346/684 (50%), Gaps = 49/684 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V
Sbjct: 20  DSNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIDV 78

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG S
Sbjct: 79  TLHADGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGAS 138

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVVTGS-AGNDTGT 171
           VVNALS+ L + + R G+++  SF  G+                  L          TGT
Sbjct: 139 VVNALSARLDIEVDRGGSVHATSFRRGVPGQFKGTGPDGAFEPTTGLRRVKRIPKTRTGT 198

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYK 226
            V +     IF      + +TL  R R+ +FL   + + + D+          E +  Y 
Sbjct: 199 RVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTLVVRDEYGLGEGGAKGEESFRYD 258

Query: 227 GGIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWND 267
           GGI  F  YL R K              +  + +      ++         +D+A+RW  
Sbjct: 259 GGISEFCEYLARDKAVCDVLRLSGQGTFKETVPVLDEHGQMTPTEVVRDLGVDVALRWGT 318

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY   V  F N I    GGTH++G   A+TR +   +  +   +  +  V+ DD  EG T
Sbjct: 319 GYETTVRSFVNIIATPKGGTHVTGFERAVTRTVNDVLRGAKLLRVAEDDVVKDDALEGLT 378

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVL 383
           +V+++++ +P+F  QTKE L +S    +V + V   L A+L     +AK     ++ KV+
Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKVV 438

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            A+  R AAR+ ++  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R
Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           + E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FD++  RY KII++
Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDLDAARYGKIILL 557

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESL 559
            DADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      
Sbjct: 558 VDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDR 617

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           E          +   + DS          +    A                  ++ A   
Sbjct: 618 ELRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRISMNDLDSAERV 677

Query: 620 GVFNCESDQEINVSLASKLANRLN 643
                 ++        +  A  L+
Sbjct: 678 FDLLMGNEVAPRKEFITNSAATLD 701



 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L +T+    RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 608 DKYVYTYSDRELRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIS 667

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           + D   A+ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 668 MNDLDSAERVFDLLMGNEVAPRKEFITNSA--ATLD 701


>gi|4099111|gb|AAD00550.1| topoisomerase II ParE [Mycoplasma arthritidis]
          Length = 614

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 232/567 (40%), Positives = 327/567 (57%), Gaps = 17/567 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG TD  +GLHH+++E++DNA+DE+L G+A  I VTL  D S  V DNGRGIP   H 
Sbjct: 1   MYIGSTD-ITGLHHLVWEIVDNALDEALAGFATDIKVTLKKDDSVIVEDNGRGIPVSKH- 58

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
             G +  E++ T LHAGGKF++  YK SGGLHGVG SVVNALS  L +++ R+   Y+  
Sbjct: 59  GSGKTGVELVFTELHAGGKFDEGVYKTSGGLHGVGSSVVNALSEKLIVKVYRDKKEYKTV 118

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F    +     V G      GT+V F P   IF    F+ D ++ +LRE SFL  +++I 
Sbjct: 119 FEQDKIIEGTNVVGPTT-KHGTKVQFWPDKTIFKKTKFSSDIVKEKLREASFLIPNLKIH 177

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
              + S E   IT     GI+ ++ ++    K  + S    +G+   I +++A+ + D Y
Sbjct: 178 FNHEESGEA--ITFEAAEGIKEYIKFVGEG-KNFISSIFYAKGTFKKIEMEIALVYTDNY 234

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            EN+  F NN+  +DGGTH +  +SALT+ I  Y  +     K+K +  GDD REG  +V
Sbjct: 235 TENIYSFVNNVKTRDGGTHETAFKSALTKTINEYASQHN-LLKNKNNFEGDDVREGIIAV 293

Query: 330 LSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +S+K+P+    F  QTK+KL + E R  VE F ++    +L E+ L++  I+ K+  +  
Sbjct: 294 VSLKIPESILEFVGQTKDKLGTLEAREAVEDFFSEKFGFYLNENKLDSDKILNKIKKSYD 353

Query: 388 VRDAARRARDLTRRKGVL--DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
            R AAR AR+  R+      +   L GKL     ++    ELFLVEGDSAGGSAK GR+ 
Sbjct: 354 ARMAARTARNEIRKIKNKLENKKILSGKLTPAQTKNSSLKELFLVEGDSAGGSAKMGRAP 413

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
             QAILPLRGK++N  +A+   +LS++EI T+I  +G GIG   F+I   +Y KIIIMTD
Sbjct: 414 NTQAILPLRGKVINTVKAKLTDILSNEEIATIINTIGAGIG-QDFNIKNSQYGKIIIMTD 472

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK---SLQYVKDEESLEDY 562
           AD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY +T         YV D++ L D 
Sbjct: 473 ADTDGAHIQVLLLTFFYRYMKKLIDAGMVYIALPPLYKLTVKGAKAKHFYVWDDDELRD- 531

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRN 589
            +    S          G ++ + L +
Sbjct: 532 -LTSKYSNYEIQRYKGLGEMNPDQLWD 557



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 96/255 (37%), Gaps = 9/255 (3%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I +    +        E   I   L  +  L        +KN   + + +   ++    
Sbjct: 347 KIKKSYDARMAARTARNEIRKIKNKLENKKILSGKLTPAQTKN---SSLKELFLVEGDSA 403

Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
                  +    QA++     V N    +  ++    ++A  +N I     + ++   + 
Sbjct: 404 GGSAKMGRAPNTQAILPLRGKVINTVKAKLTDILSNEEIATIINTIGAGIGQDFNIKNSQ 463

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
              ++           +      F +    K I +  +      +  L   G K K    
Sbjct: 464 YGKIIIMTDADTDGAHIQVLLLTFFYRYMKKLIDAGMVYIALPPLYKLTVKGAKAKHFYV 523

Query: 720 CSLLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
               D +  +  K     +QRYKGLGEMN  QLW+TT+NP+TRS+LRV+I D    +   
Sbjct: 524 WDD-DELRDLTSKYSNYEIQRYKGLGEMNPDQLWDTTMNPETRSILRVRINDEGLTERNV 582

Query: 778 SRLMGDEVEPRREFI 792
           + LM D++  R+ +I
Sbjct: 583 TTLMSDDINARKLWI 597


>gi|297191607|ref|ZP_06909005.1| DNA topoisomerase IV subunit B [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719347|gb|EDY63255.1| DNA topoisomerase IV subunit B [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 708

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 234/685 (34%), Positives = 349/685 (50%), Gaps = 51/685 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+ D I V 
Sbjct: 20  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLLHCLWEIIDNSVDEALGGHCDHIEVI 78

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 79  LHEDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 138

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVV-TGSAGNDTGTE 172
           VNALS+ L + + R G  + +SF  G+                N L          TGT 
Sbjct: 139 VNALSARLDVEVDRGGATHMISFRRGVPGIFTESGPDAPFDPANGLRKGKRVPKARTGTR 198

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFY 225
           V +     IF      + +TL  R R+ +FL   + I + D+R             T  +
Sbjct: 199 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVHDERGLTEAGGEGKSVETFRF 258

Query: 226 KGGIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWN 266
            GGI  F  YL + K              +  + +   R +++         +D+A+RW 
Sbjct: 259 DGGISEFCEYLAQDKPVCDVLRLTGQGTFKETVPVLDDRGHMTPTEVTRELGVDIALRWG 318

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            GY  N+  F N I    GGTH++G   ++T+ +   +  +   +  +  ++ DD  EG 
Sbjct: 319 TGYDTNLKSFVNIIATPKGGTHVTGFERSVTKTMNEVLRSAKMLRVAEDDIVKDDALEGL 378

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKV 382
           T+V+++++ +P+F  QTKE L +S    +V + V   L A+L     +AK     +++K 
Sbjct: 379 TAVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLEKA 438

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + A+  R AAR+ ++  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  
Sbjct: 439 VAAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLA 498

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+ E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KI++
Sbjct: 499 RNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKIVL 557

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEES 558
           + DADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV     
Sbjct: 558 LVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELIQPKKGQDKYVYTYSD 617

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
            E          +   F DS          +    A              +   +E +  
Sbjct: 618 NELRQTLLEFQRKGVRFKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINIGDLESSEQ 677

Query: 619 SGVFNCESDQEINVSLASKLANRLN 643
                  ++        +  A  L+
Sbjct: 678 IFDLLMGNEVAPRKEFITSSAATLD 702



 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+    RKG+    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 609 DKYVYTYSDNELRQTLLEFQRKGVRFKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 668

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   ++ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 669 IGDLESSEQIFDLLMGNEVAPRKEFITSSA--ATLD 702


>gi|239775116|gb|ACS15316.1| DNA gyrase subunit B [Kribbella sancticallisti]
          Length = 558

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 255/559 (45%), Positives = 350/559 (62%), Gaps = 11/559 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T GE GLHH++ EV+DNA+DE+L GY D I VTL  DG+  V DNGRGIP D+ +
Sbjct: 1   MYIGST-GERGLHHLVTEVVDNAVDEALAGYCDKIVVTLLPDGAVRVVDNGRGIPVDIVE 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
            EG  A  V++T LHAGGKF    YKVSGGLHGVGVSVVNALS  L++ +++ G  Y  S
Sbjct: 60  SEGKPAVTVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSDRLRVDVRKNGKAYTQS 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F  G+ D  L   G   +  GT +TF PS  +F    F+Y+TL  R RE +FLN  +++ 
Sbjct: 120 FTVGVPDADLAEVG-TSDANGTTITFWPSPGVFESTTFSYETLSTRFREYAFLNKGLELV 178

Query: 210 LIDKRSP-----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLA 262
           + D+R+      EP E +  Y  G+  +V YL   ++ + +  I  + +   +++S+++A
Sbjct: 179 IRDERTDSTEDGEPVEQSFKYDDGLVDYVKYLTGIRETVHRDVIAFEAAQGDNSLSLEVA 238

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+W+  + E+V  F N I   +GGTH  G R+ALT  + S+ E     KK +  + GDD 
Sbjct: 239 MQWSGSFQESVHTFANTINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDI 298

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV-KK 381
           REG T+++S+K+ +P+F  QTK KL ++EV+  V+  VND L AW E++P E + I+ K 
Sbjct: 299 REGLTAIISVKLGEPQFEGQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPQEGREIIRKA 358

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
              AS    A +       RKG+L    LPGKL+DC   +P++ E+++VEGDSAGGSAK 
Sbjct: 359 TAAASARIAARKARDLARNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKG 418

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR  + QAILP+RGKILNVE+AR DK+L + E+  +I+ALGTGI +D FD  KLRYHKI+
Sbjct: 419 GRDPKFQAILPIRGKILNVEKARIDKVLQNNEVQAIISALGTGIHED-FDEEKLRYHKIV 477

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           IM DADVDG HIRTLLLT  FR M  LI  G +Y  +PPLY I    S   +   E  +D
Sbjct: 478 IMADADVDGQHIRTLLLTLLFRFMRPLIERGRVYAAQPPLYKIRWSNSAHELAYTEREKD 537

Query: 562 YLINQSLSEEIELFCDSKG 580
            L+        +L  ++  
Sbjct: 538 GLMAAGFEAGKKLPKENGT 556


>gi|68249955|ref|YP_249067.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 86-028NP]
 gi|148826055|ref|YP_001290808.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittEE]
 gi|68058154|gb|AAX88407.1| topoisomerase IV subunit B [Haemophilus influenzae 86-028NP]
 gi|148716215|gb|ABQ98425.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittEE]
          Length = 632

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/645 (35%), Positives = 341/645 (52%), Gaps = 23/645 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFASKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDTHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G IY+++F NG     L +        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            P     +G+ + +S    +   +G       + N IP   GGTH++GLR  L   I  +
Sbjct: 236 KPFVGEFKGTNEAVSW-ALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D 
Sbjct: 295 CEFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDA 353

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +
Sbjct: 354 FSLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLE 410

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  
Sbjct: 411 KTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVAL 468

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY 
Sbjct: 469 GIDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYR 528

Query: 544 ITRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDK 599
           I   K + Y  DE   E     +     +         G ++ + LR    D    ++ +
Sbjct: 529 IDLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQ 588

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           L  D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 589 LTYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 720 CSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            ++LD + +  +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 545 EAILDRLKN--KKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|68138640|gb|AAY85995.1| GyrB [Burkholderia cenocepacia]
          Length = 619

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 267/623 (42%), Positives = 384/623 (61%), Gaps = 20/623 (3%)

Query: 135 LKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           L+L ++R+G    M F  G+              +P++VTG    + GTEV F+    IF
Sbjct: 1   LRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV ++++ K  
Sbjct: 60  GTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEFINKTKST 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  
Sbjct: 118 LHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINK 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V  
Sbjct: 178 YITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAK 237

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP
Sbjct: 238 ALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDP 297

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG
Sbjct: 298 AKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALG 357

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG++ +++ KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY
Sbjct: 358 CGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLY 417

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L       L    +I+
Sbjct: 418 KIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIE 477

Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSIN 658
                +D   +E AV+ GV    S++E   + A  L   L+  A K+E      +     
Sbjct: 478 RLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEVRVVPSYDAVRE 536

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
              + V+R   G     V++     +   +     +N  +        +      + +  
Sbjct: 537 QRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMVVAD 596

Query: 719 PCSLLDTIFSIGRKGISMQRYKG 741
             S +  + +   + +S QRYKG
Sbjct: 597 FKSAMKWLLADAERNVSKQRYKG 619


>gi|194339057|gb|ACF49444.1| GyrB [Amycolatopsis australiensis]
          Length = 451

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/452 (44%), Positives = 287/452 (63%), Gaps = 15/452 (3%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
            GLHH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP ++H +E     EV
Sbjct: 1   RGLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVEMHPKEQKPTIEV 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           ++T LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   +KR G  +   + N +   P
Sbjct: 61  VLTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTRLLAEVKRGGRSWRQEYTNQVP-GP 119

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G    +TGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  + 
Sbjct: 120 LEDLGPTS-ETGTTITFWADPDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADE 178

Query: 219 REI-------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
                           T  Y GG+E FV +++  K P+  S I        + +++AM+W
Sbjct: 179 ETEADAEGKVARVKEKTYCYPGGLEDFVKHINGSKDPIHPSVISFDAKGTGLEVEVAMQW 238

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N+G+  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG
Sbjct: 239 NNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREG 298

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + +
Sbjct: 299 LAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISS 358

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ARDL RRKG LDI  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR  
Sbjct: 359 AQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTNPEECELYIVEGDSAGGSAKEGRDS 418

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
             QAILP+RGKI+NVE+AR D++L + E+ +L
Sbjct: 419 RYQAILPIRGKIINVEKARIDRVLKNTEVQSL 450


>gi|145632919|ref|ZP_01788652.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 3655]
 gi|144986575|gb|EDJ93141.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 3655]
          Length = 632

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/645 (35%), Positives = 341/645 (52%), Gaps = 23/645 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFASKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDTHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L V        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            P     +G+ + +S    +   +G       + N IP   GGTH++GLR  L   I  +
Sbjct: 236 KPFVGEFKGTNEAVSW-ALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D 
Sbjct: 295 CEFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDA 353

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +
Sbjct: 354 FSLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLE 410

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  
Sbjct: 411 KTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVAL 468

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY 
Sbjct: 469 GIDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYR 528

Query: 544 ITRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDK 599
           I   K + Y  DE   E     +     +         G ++ + LR    D    ++ +
Sbjct: 529 IDLNKEVFYALDESEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQ 588

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           L  D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 589 LTYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 8/55 (14%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            LD             +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 538 ALDESEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|257092303|ref|YP_003165944.1| DNA topoisomerase IV subunit B [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044827|gb|ACV34015.1| DNA topoisomerase IV, B subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 649

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 213/652 (32%), Positives = 301/652 (46%), Gaps = 26/652 (3%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A+SI +LKGL+ V+ RP MY   T  +  L H+I E +DNA DE+L GY   I+VTL
Sbjct: 2   SYTAESIAVLKGLEPVRHRPGMY---TRTDCPL-HIIQEAIDNAADEALGGYCKRISVTL 57

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKVSGGLHGVG 124
           + D S TV D+GRGIP ++H  E +   EV+ TRLHAGGKFN+     +Y+ SGGLHGVG
Sbjct: 58  HRDHSVTVQDDGRGIPVEMHPLEKVPTLEVVFTRLHAGGKFNKDDGASAYRFSGGLHGVG 117

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFS 183
           VSV NALS+ L++ + R+G  + M+F  G +  PL   G A    TGT +   P    F 
Sbjct: 118 VSVTNALSTRLEVEVVRDGARHRMAFAGGEVVEPLQRVGDAPKKTTGTRLRAWPDPAFFD 177

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
                   L+  LR  + L   + +SL  +                 A     +      
Sbjct: 178 TPAIPLAQLERLLRSKALLLPGLHVSLSVEDGATSEWCFANGMLQYLAEQIDGEAVAPVF 237

Query: 244 MQSPIRIQGSRDNI---SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
                  +G  +         A+ W          + N IP   GGTH +GLR A    I
Sbjct: 238 SSEKYAAKGDENFPAGSGAAWAICWTAEGGLARESYVNLIPTTAGGTHEAGLRQAALDAI 297

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            S+ E           +  +D     + VL+++M DP F  QTKE+L S +  ++V   +
Sbjct: 298 RSFAEHHA-LLPKGVKLAAEDVFSRASFVLAVRMLDPSFQGQTKERLNSRDAVALVARML 356

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L  WL EHP  AK I    + A+  R  A +      ++    +A LPGKL+DC   
Sbjct: 357 RDPLELWLNEHPEAAKRITDLAIRAAQARTRAGQK---VEKRKQSGVAILPGKLSDCQSE 413

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D  ++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN        + +++E+  +  A
Sbjct: 414 DVNRNEIFLVEGDSAGGSAKSGRDKELQAILPLRGKVLNTWEVEAGSLFANREVHDIAVA 473

Query: 481 LGTGIG---QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           LG            +  LRY K++IMTDADVDG+HIR LL T F+R  P LI  G LY  
Sbjct: 474 LGIDPHPPSAPDAVLTNLRYGKVVIMTDADVDGSHIRVLLCTLFYRHFPKLIARGHLYFA 533

Query: 538 KPPLYGI-------TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           +PPLY +        R     Y  D    +  +    L                 ++   
Sbjct: 534 QPPLYRLDVPGQGKNRPPRKIYALDSAERDASIDRLRLEGVKPEAISISRFKGLGEMNPE 593

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
                 +    +               +  +   + +     +   +    +
Sbjct: 594 QLWETTMSPDTRRLMRIRMPGTEAAKPVMNMLMAKGESAGRRAWMEENGAMI 645



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 5/77 (6%)

Query: 723 LDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +D +   G K   IS+ R+KGLGEMN  QLWETT++PDTR L+R+++     A  + + L
Sbjct: 566 IDRLRLEGVKPEAISISRFKGLGEMNPEQLWETTMSPDTRRLMRIRMPGTEAAKPVMNML 625

Query: 781 M--GDEVEPRREFIQEN 795
           M  G E   RR +++EN
Sbjct: 626 MAKG-ESAGRRAWMEEN 641


>gi|94983861|gb|ABF50635.1| DNA topoisomerase IV subunit B [Spiroplasma phoeniceum]
 gi|94983863|gb|ABF50636.1| DNA topoisomerase IV subunit B [Spiroplasma phoeniceum]
          Length = 554

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 232/559 (41%), Positives = 344/559 (61%), Gaps = 12/559 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L GY + I + +  + +  V+DNGRG+PT +H   G
Sbjct: 1   GSTD-VRGLHHLVWEIIDNSIDEALAGYCNEIDIIIYKNNAIMVADNGRGVPTGIHSS-G 58

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  EVI + LHAGGKF    YK SGGLHGVG SVVNALSS   + I R+  ++ + F N
Sbjct: 59  KSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSTFDVTIYRDHKVWSIKFAN 118

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G      +        TGT VTFLP   IF V DF++ T+  R+RE +FLNS V+++L D
Sbjct: 119 GGQVKEPLTKIGTTTKTGTTVTFLPDHKIFKVIDFSFSTISERIRESAFLNSGVKLTLTD 178

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R+ +          G+E F++Y++  KK +    I ++G    I +++A++++  ++EN
Sbjct: 179 QRTDKKVSYLF--NNGLEEFITYMNEGKKSITP-IIMLKGIEKQIEVEIALQYSTEFNEN 235

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +L F NN+   +GG+H++G R+ LT+ I  Y  K    K+  +++   D REG T+++S+
Sbjct: 236 LLSFANNVKTSEGGSHVAGFRTGLTKVINDYARKEGLLKEKDKNLDSVDTREGLTAIVSV 295

Query: 333 KMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           K+P+   ++  QTK KL + E R VVE+ V+     WL E+   A  I++K L A  VR+
Sbjct: 296 KIPENLIQYEGQTKGKLGTYEARLVVETIVSKQFGFWLTENKANAYTIIEKALLARNVRE 355

Query: 391 AARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
            AR+AR+     +K       L GKL     R+   +E+FLVEGDSAGGSAK GR R  Q
Sbjct: 356 EARKAREAARNSKKRGNSDRLLTGKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQ 415

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+A+   +++++EI  +I A+GTG+G   FDIN   Y K+IIMTDAD 
Sbjct: 416 AILPLRGKVINAEKAKIQDLMNNEEINVMINAIGTGVGNG-FDINDANYGKVIIMTDADT 474

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI--TRGKSLQYVKDEESLEDYLINQ 566
           DGAHI+TLLLTFF+R M  LI N  +Y+  PPL+ I  T+ K ++Y  DE  L++ L   
Sbjct: 475 DGAHIQTLLLTFFYRYMRPLIENHRVYLALPPLFKITSTKNKHIEYAWDETELKNKLSQF 534

Query: 567 SLSEEIELFCDSKGVISKN 585
               E++ +     + ++ 
Sbjct: 535 HGKFELQRYKGLGEMNAEQ 553



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 5/133 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +N I       +  +  N   ++           +    
Sbjct: 424 VINAEKAKIQDLMNNEEINVMINAIGTGVGNGFDINDANYGKVIIMTDADTDGAHIQTLL 483

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSI-GRKGISMQ 737
             F +      I ++R+      +  +    +K          L + +    G+    +Q
Sbjct: 484 LTFFYRYMRPLIENHRVYLALPPLFKITSTKNKHIEYAWDETELKNKLSQFHGK--FELQ 541

Query: 738 RYKGLGEMNASQL 750
           RYKGLGEMNA QL
Sbjct: 542 RYKGLGEMNAEQL 554


>gi|260906544|ref|ZP_05914866.1| DNA topoisomerase IV subunit B [Brevibacterium linens BL2]
          Length = 703

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/669 (34%), Positives = 337/669 (50%), Gaps = 59/669 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++  SY A  + +L GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+L G+   I
Sbjct: 1   MEEESYGARHLSVLSGLEAVRKRPGMYIGTTDS-RGLMHCLWEIIDNAVDEALGGFGKSI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + L  DGS  V+D+GRGIP D+  + G++  EV++T+LHAGGKF   SY  SGGLHGVG
Sbjct: 60  LIELEPDGSVAVTDSGRGIPVDIEPKTGLTGVEVVLTKLHAGGKFGGSSYAASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGI------------LDNPLV----------VT 162
            SVVNALS+ L + + R   +++MSF  G+             DNP            V 
Sbjct: 120 ASVVNALSARLDVEVTRGSKVHKMSFRRGVPGRFDDSSGQPGPDNPFEEFHEPTGLDVVR 179

Query: 163 GSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE- 220
            +    TGT V +     IF S   F+Y  L  R R+ +FL   +++ + D+R     E 
Sbjct: 180 KAKKGVTGTRVQYWADPQIFLSKAQFDYQHLVERARQTAFLVPGLELRIEDRRGVARDET 239

Query: 221 --------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
                       + GGI  FV +L           ++  G                    
Sbjct: 240 GEVIAERLEVFRFDGGITEFVDHLSIDPPMTDTWRLQDTGKFSETVPVLDSSGHLVSKEV 299

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FGSKK 312
              + +D+A+RW  GY   V  F N +    GGTHL+G   A  + +   VE +    K 
Sbjct: 300 EREVGVDIALRWGTGYDTKVKSFVNVVSTPHGGTHLAGFEQASLKAMRKAVEANARKLKL 359

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            K  +  DD   G T+V+++++ +P+F  QTKE L ++ VR +V   V   L   L    
Sbjct: 360 GKDKLEKDDVLAGLTAVVTVQLAEPQFEGQTKEVLGTAAVRQIVAKTVERQLGDILSSTK 419

Query: 373 LEAKI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
              K     +++KV+     R +AR  ++  RRK  L+ +SLP KL DC +   + +ELF
Sbjct: 420 RAEKQQAAVLMEKVVAELKSRISARTHKENQRRKTALEASSLPAKLYDCRDNGVENTELF 479

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSA G+AK  R+ ++QA+ P+RGKILNV++A    ML++ E   LI  +G G G+ 
Sbjct: 480 IVEGDSAMGTAKAARNSDHQALFPIRGKILNVQKASLSDMLANVECAALIQVIGAGSGRS 539

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FDI+  RY ++IIMTDADVDGAHIRTLLLT FFR M  L+  G ++   PPL+ +    
Sbjct: 540 -FDIDAARYGRVIIMTDADVDGAHIRTLLLTLFFRYMKPLVEQGRVFAAVPPLHRVEVVT 598

Query: 549 SLQYVKDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
                 D      +  +   L +  +     K  I +      +D     +  +      
Sbjct: 599 KRGTPNDVIYTYSEAELQALLKKLEKSKKTYKEPIQRYKGLGEMDADQLAETTMDPSMRT 658

Query: 608 HDKTFIEQA 616
             +  +  A
Sbjct: 659 LRRVTMADA 667



 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QL ETT++P  R+L RV + DA  A++ F  LMG  V PR+EFI   
Sbjct: 633 IQRYKGLGEMDADQLAETTMDPSMRTLRRVTMADAEAAENTFELLMGSSVGPRKEFIVSG 692

Query: 796 SLPSALD 802
           +  + LD
Sbjct: 693 A--AVLD 697


>gi|68138715|gb|AAY86005.1| GyrB [Burkholderia cenocepacia]
          Length = 618

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 267/622 (42%), Positives = 383/622 (61%), Gaps = 20/622 (3%)

Query: 136 KLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           +L ++R+G    M F  G+              +P++VTG    + GTEV F+    IF 
Sbjct: 1   RLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFG 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++ K  L
Sbjct: 60  TVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNL 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y
Sbjct: 118 HPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   
Sbjct: 178 ITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKA 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP 
Sbjct: 238 LEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPA 297

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG 
Sbjct: 298 KCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGC 357

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY 
Sbjct: 358 GIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYK 417

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L       L    +I  
Sbjct: 418 IKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIDR 477

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINN 659
               +D   +E AV+ GV    S++E   + A  L   L+  A K+E      +      
Sbjct: 478 LSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEVRVVPSYDAVREQ 536

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             + V+R   G     V++     +   +     +N  +        +      + +   
Sbjct: 537 RALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMAVADF 596

Query: 720 CSLLDTIFSIGRKGISMQRYKG 741
            S +  + +   + +S QRYKG
Sbjct: 597 KSAMKWLLADAERNVSKQRYKG 618


>gi|288871346|ref|ZP_06410123.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479]
 gi|288863832|gb|EFC96130.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479]
          Length = 496

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/471 (41%), Positives = 289/471 (61%), Gaps = 10/471 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ADSI +L+GL+AV+KRP MYIG   G  GL+H+IYE++DNA+DE L G+ + I
Sbjct: 29  MAKTQYNADSITVLEGLEAVRKRPGMYIGSV-GTKGLNHLIYEIVDNAVDEHLAGFCNQI 87

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL  DGSCTV D GRGIP ++HK+ G+SA  ++++ LHAGGKF+  +YK SGGLHGVG
Sbjct: 88  WVTLEADGSCTVRDAGRGIPVEMHKK-GMSAERIVLSTLHAGGKFDNDAYKTSGGLHGVG 146

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSS 179
            SVVNALS  + +++ + G I+  ++  GI         L   G    +TGTE+ FLP  
Sbjct: 147 SSVVNALSERMSVKVYKNGLIHYDAYERGIPTVELVDGLLPTRGKTK-ETGTEINFLPDG 205

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    F  + L+ RL E ++LN ++QI+  +KR  E   I      GI ++V  L+  
Sbjct: 206 EIFEKTRFKAEWLKSRLHETAYLNPNLQITYQNKRGGEEETILFHEPEGIISYVKELNSG 265

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+   PI  +G+ D + +++A ++ D + EN+L F NNI  ++GGTHL+G ++  T+ 
Sbjct: 266 KAPVH-DPIYYKGTIDKVEVEVAFQFVDTFEENILGFCNNIFTQEGGTHLAGFKTRFTQM 324

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I SY  +    K+   +  G D R G T+V+++K PDP F  QTK KL S++    V + 
Sbjct: 325 INSYARELGILKEKDANFTGADTRNGMTAVVAVKHPDPIFEGQTKTKLASADATKAVFTV 384

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
             D L  + + +    K ++     ++ +R A  +A+     K      S  GKLA+C  
Sbjct: 385 TGDELQRYFDRNLEILKAVISCAEKSAKIRKAEEKAKTNMLSKSKFSFDS-NGKLANCES 443

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           RD +K E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  ++   
Sbjct: 444 RDAEKCEIFIVEGDSAGGSAKTARNRMYQAILPIRGKILNVEKASMEQGFG 494


>gi|73810190|gb|AAZ86068.1| DNA gyrase subunit B [Burkholderia cenocepacia]
          Length = 618

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 266/622 (42%), Positives = 384/622 (61%), Gaps = 20/622 (3%)

Query: 136 KLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           +L ++R+G    M F  G+              +P++VTG    + GTEV F+    IF 
Sbjct: 1   RLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFG 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV ++++ K  L
Sbjct: 60  TVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEFINKTKSTL 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y
Sbjct: 118 HPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   
Sbjct: 178 ITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKA 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP 
Sbjct: 238 LEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPA 297

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG 
Sbjct: 298 KCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGC 357

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY 
Sbjct: 358 GIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYK 417

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L       L    +I+ 
Sbjct: 418 IKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIER 477

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINN 659
               +D   +E AV+ GV    S++E   + A  L   L+  A K+E      +      
Sbjct: 478 LSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEVRVVPSYDPVREQ 536

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
             + V+R   G     V++     +   +     +N  +        +      + +   
Sbjct: 537 RALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMAVADF 596

Query: 720 CSLLDTIFSIGRKGISMQRYKG 741
            S +  + +   + +S QRYKG
Sbjct: 597 KSAMKWLLADAERNVSKQRYKG 618


>gi|297517941|ref|ZP_06936327.1| DNA gyrase subunit B [Escherichia coli OP50]
          Length = 394

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 170/394 (43%), Positives = 238/394 (60%), Gaps = 8/394 (2%)

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 1   QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 60

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           ITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI 
Sbjct: 61  ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 120

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY + +GK  QY+KD+E+++ Y I+ +L         S   ++   L   + +    
Sbjct: 121 QPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNAT 180

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSE 650
            K+I      + K  +++ +           D++      + L + LN   +     K +
Sbjct: 181 QKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFD 240

Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710
              +   N  + +V+    GV   + L+   I     +       ++         +   
Sbjct: 241 VHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERG 300

Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             +  +      LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R +LRV + DA
Sbjct: 301 ERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDA 360

Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
             AD LF+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 361 IAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 394


>gi|152965502|ref|YP_001361286.1| DNA topoisomerase IV subunit B [Kineococcus radiotolerans SRS30216]
 gi|151360019|gb|ABS03022.1| DNA topoisomerase (ATP-hydrolyzing) [Kineococcus radiotolerans
           SRS30216]
          Length = 693

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/698 (35%), Positives = 350/698 (50%), Gaps = 56/698 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             +  Y A ++ +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+   I
Sbjct: 7   TPDDKYTAANLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGHCSRI 65

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS  V D+GRGIP D  K  G+S  EV+ T LHAGGKF   SY  SGGLHGVG
Sbjct: 66  DVVLRRDGSVEVRDDGRGIPVDAEKRTGLSGVEVVFTHLHAGGKFGGGSYSASGGLHGVG 125

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFING--------------ILDNPLVVTGSAGN-DT 169
            SVVNALS+ L + + R G  Y  SF  G                +  L V G A    T
Sbjct: 126 ASVVNALSARLDVEVDRGGKTYATSFRRGTPGRYAGEGPDADFTPETGLAVVGRAKRGVT 185

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V +     IF     F+Y+ L  R R+ SFL   ++I L D+RS E  E    + GG
Sbjct: 186 GTRVRYWADRQIFLKEAAFSYEDLVARARQTSFLVPGLRIVLRDERSGEATEEVFQHDGG 245

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN---------------------ISIDLAMRWND 267
           I  +  +        + S  R+QG                           +D+A+RW  
Sbjct: 246 IGEYADF--LTPDAPVTSVWRLQGEDTFTETVPVLDDSGHMSPQEVTRDCVVDIALRWGT 303

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY--VEKSFGSKKDKRSVIGDDCREG 325
           GY   V  F N I    GG+HLSG    L   +      +           +  DD   G
Sbjct: 304 GYDPTVRSFVNIISTPKGGSHLSGFEQGLHAAVKKQVDAQARRLKVGRDEKLEKDDVLAG 363

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKK 381
            T+V+++++ +P+F  QTKE L ++ VR++V   V + L A       + K     ++ K
Sbjct: 364 LTAVVTVRLAEPQFEGQTKEVLGTAAVRAIVRKVVENELGAVFASPKRDDKQEATAVLDK 423

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           V+     R +AR  ++  RRK  L+ +SLP KL DC   D   +ELFLVEGDSA G+A  
Sbjct: 424 VVAEMKSRISARLHKETQRRKNALESSSLPAKLKDCRSDDVDNTELFLVEGDSALGTAMG 483

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
            R+ E QA+LPLRGKILNV++A    ML + E  ++I  +G G G+  FD++ +RY KI+
Sbjct: 484 ARNSEYQALLPLRGKILNVQKASVTDMLKNAECASIIQVVGGGSGRS-FDLSAVRYGKIV 542

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           +MTDADVDGAHIRTLLLT FFR M  LI  G ++   PPL+ +   +  +  K+      
Sbjct: 543 LMTDADVDGAHIRTLLLTLFFRYMRPLIEAGRVFAAVPPLHRLEVTQPGKKGKEVVYTYS 602

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK-TFIEQAVISG 620
               + ++ ++     S     +      +D+    +  ++  +    + T  + AV   
Sbjct: 603 DAELRRVTADLNRRGRSYREPQRYKGLGEMDEDQLAETTMERQHRTLRRVTVADGAVADR 662

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
           VF      +        +A R +FI   +EK   G I+
Sbjct: 663 VFELLMGND--------VAPRKDFIIAGAEKLDRGRID 692



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
           QRYKGLGEM+  QL ETT+    R+L RV + D + AD +F  LMG++V PR++FI
Sbjct: 624 QRYKGLGEMDEDQLAETTMERQHRTLRRVTVADGAVADRVFELLMGNDVAPRKDFI 679


>gi|326776128|ref|ZP_08235393.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656461|gb|EGE41307.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 708

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 235/683 (34%), Positives = 347/683 (50%), Gaps = 48/683 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+ D I V
Sbjct: 22  SSNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGHCDQIEV 80

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG S
Sbjct: 81  ILHDDASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGAS 140

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVV-TGSAGNDTGT 171
           VVNALS+ L + + R    + +SF  G+        P         L          TGT
Sbjct: 141 VVNALSARLDVEVDRNSATHSISFRRGVPGMFTEQGPDSPFDPANGLRKGKRVPKTRTGT 200

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---PREITMFYKG 227
            V +     IF      N DTL  R R+ +FL   + I + D+R  +     E T  + G
Sbjct: 201 RVRYWADRQIFLKDARLNLDTLHQRARQTAFLVPGLTIIVRDERGLDGEGKTEETFRFDG 260

Query: 228 GIEAFVSYLDRHK----------KPLMQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  YL + K              +  + +   R +++         +D+A+RW  G
Sbjct: 261 GISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDRGHMTATEVTRELAVDIALRWGTG 320

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   V  F N I    GGTH++G   +LT+ +   +  +   +  +  ++ DD  EG T+
Sbjct: 321 YDTTVRSFVNIIATPKGGTHVTGFERSLTKTVNEALRSAKMLRVAEDDIVKDDALEGLTA 380

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLD 384
           V+++++ +P+F  QTKE L +S    +V   V   L A+L     +AK     +++K + 
Sbjct: 381 VVTVRLAEPQFEGQTKEVLGTSAANRIVAGVVAKELKAFLTSTKRDAKAQARAVLEKAVA 440

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R+
Sbjct: 441 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARN 500

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KI+++ 
Sbjct: 501 SEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKIVLLV 559

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      E
Sbjct: 560 DADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNE 619

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +     +S          +    A              +   +E +    
Sbjct: 620 LRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTMDPRHRTLRRINIGDLESSEQVF 679

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                ++        +  A  L+
Sbjct: 680 DLLMGNEVAPRKEFITSSAATLD 702



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+    RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 609 DKYVYTYSDNELRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 668

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   ++ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 669 IGDLESSEQVFDLLMGNEVAPRKEFITSSA--ATLD 702


>gi|94983859|gb|ABF50634.1| DNA topoisomerase IV subunit B [Spiroplasma phoeniceum]
          Length = 554

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 232/559 (41%), Positives = 343/559 (61%), Gaps = 12/559 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L GY + I + +  + +  V+DNGRG+PT +H   G
Sbjct: 1   GSTD-VRGLHHLVWEIIDNSIDEALAGYCNEIDIIIYKNNAIMVADNGRGVPTGIHSS-G 58

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  EVI + LHAGGKF    YK SGGLHGVG SVVNALSS   + I R+  ++ + F N
Sbjct: 59  KSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSTFDVTIYRDHKVWSIKFAN 118

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G      +        TGT VTFLP   IF V DF++ T+  R+RE +FLNS V+++L D
Sbjct: 119 GGQVKEPLTKIGTTTKTGTTVTFLPDHKIFKVIDFSFSTISERIRESAFLNSGVKLTLTD 178

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R+ +          G+E F++Y++  KK +    I ++G    I +++A++++  ++EN
Sbjct: 179 QRTDKKVSYLF--NNGLEEFITYMNEGKKSITP-IIMLKGIEKQIEVEIALQYSTEFNEN 235

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +L F NN+   +GG+H++G R+ LT+ I  Y  K    K+  +++   D REG T+++S+
Sbjct: 236 LLSFANNVKTSEGGSHVAGFRTGLTKVINDYARKEGLLKEKDKNLDSVDTREGLTAIVSV 295

Query: 333 KMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           K+P+   ++  QTK KL + E R VVE+ V      WL E+   A  I++K L A  VR+
Sbjct: 296 KIPENLIQYEGQTKGKLGTYEARLVVETIVAKQFGFWLTENKANAYTIIEKALLARNVRE 355

Query: 391 AARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
            AR+AR+     +K       L GKL     R+   +E+FLVEGDSAGGSAK GR R  Q
Sbjct: 356 EARKAREAARNSKKRGNSDRLLTGKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQ 415

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+A+   +++++EI  +I A+GTG+G   FDIN   Y K+IIMTDAD 
Sbjct: 416 AILPLRGKVINAEKAKIQDLMNNEEINVMINAIGTGVGNG-FDINDANYGKVIIMTDADT 474

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI--TRGKSLQYVKDEESLEDYLINQ 566
           DGAHI+TLLLTFF+R M  LI N  +Y+  PPL+ I  T+ K ++Y  DE  L++ L   
Sbjct: 475 DGAHIQTLLLTFFYRYMRPLIENHRVYLALPPLFKITSTKNKHIEYAWDETELKNKLSQF 534

Query: 567 SLSEEIELFCDSKGVISKN 585
               E++ +     + ++ 
Sbjct: 535 HGKFELQRYKGLGEMNAEQ 553



 Score = 51.5 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 5/133 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +N I       +  +  N   ++           +    
Sbjct: 424 VINAEKAKIQDLMNNEEINVMINAIGTGVGNGFDINDANYGKVIIMTDADTDGAHIQTLL 483

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSI-GRKGISMQ 737
             F +      I ++R+      +  +    +K          L + +    G+    +Q
Sbjct: 484 LTFFYRYMRPLIENHRVYLALPPLFKITSTKNKHIEYAWDETELKNKLSQFHGK--FELQ 541

Query: 738 RYKGLGEMNASQL 750
           RYKGLGEMNA QL
Sbjct: 542 RYKGLGEMNAEQL 554


>gi|301156477|emb|CBW15948.1| DNA topoisomerase IV, subunit B [Haemophilus parainfluenzae T3T1]
          Length = 632

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 227/647 (35%), Positives = 338/647 (52%), Gaps = 22/647 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKVEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHADQSLEVIDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG+    L V        TGT V F P+   F  +
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGVKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSK 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L+H LR  + L S ++I  +DK +         Y+ G+  +++      + L +
Sbjct: 178 NFSVSRLRHLLRAKAVLCSGLEIKFVDKVNNTE--DVWCYQDGLSDYLTEAVNGFETLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +      ++  A +   +G       + N IP   GGTH++GLR  L   +T Y 
Sbjct: 236 KPFVGEFKGSTEAVSWALLWLPEGGELIAESYVNLIPTVQGGTHVNGLRQGLLNAMTEYC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +    +LS+KM D +F+ QTKE+L S +    V   + D  
Sbjct: 296 EFRNKLPRG-VKLTADDIWDRCAYILSLKMQDAQFAGQTKERLSSRQSAVFVAGVLKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++  +A  + +  + ++        A     RK ++   +LPGKLADC+ ++ +K
Sbjct: 355 SLWLNQNVQDADRLAEMAISSAQ---RRLNAAKKVVRKKLVSGPALPGKLADCASQNLEK 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVASDQVLGSTEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I
Sbjct: 470 IDPDNEDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   E  L      +        KG+         +D +   +  +   
Sbjct: 530 DLGKEVFYALDESEKEAILERLKGKKGTLNVQRFKGL-------GEMDPSQLRETTMDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAEKSE 650
                +   E     G    E     +    A    N L    ++ +
Sbjct: 583 TRRLVQLTYELGEDQGAETLELMDMLLAKKRAEDRKNWLQTNGDQVD 629



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 724 DTIFS--IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT----DASQADDL 776
           + I     G+KG +++QR+KGLGEM+ SQL ETT++P+TR L+++         ++  +L
Sbjct: 545 EAILERLKGKKGTLNVQRFKGLGEMDPSQLRETTMDPNTRRLVQLTYELGEDQGAETLEL 604

Query: 777 FSRLMGDE-VEPRREFIQENSLPSAL 801
              L+  +  E R+ ++Q N     L
Sbjct: 605 MDMLLAKKRAEDRKNWLQTNGDQVDL 630


>gi|62868798|gb|AAY17585.1| DNA gyrase B subunit [Lactobacillus crispatus]
          Length = 483

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 229/485 (47%), Positives = 329/485 (67%), Gaps = 4/485 (0%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIG T  + GLHH+++E++DN+IDE L G+A  I VT+N DGS TV D+GRGIP D+
Sbjct: 1   PGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDI 59

Query: 88  HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
            ++ G  A E + T LHAGGKF    YKVSGGLHGVG SVVNALS+ L + + R+G  Y 
Sbjct: 60  QEKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYF 119

Query: 148 MSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSS 205
           + F +G + + +   G+   ++ GT V F P  DIF+      D  L++R+REL+FLN  
Sbjct: 120 IDFDHGRVKDEMKQIGTVPLDEHGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKG 179

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           + ++  DKR          ++GGI+ +V++L++ ++ L   PI ++ + + I +++A+++
Sbjct: 180 LTLTFTDKRKDTAETDVYKFEGGIKEYVAFLNKGQEVLFDDPIYVESTYNGIDVEVALQY 239

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
            +GY   ++ F NNI   +GG H +G ++ALTR +  Y  KS   K    ++ G+D REG
Sbjct: 240 TNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREG 299

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K P P+F  QTK KL +S+ R+ V+   ++  S +L E+P   + IV+K   A
Sbjct: 300 MTAIVSVKHPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLA 359

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
              R AA+RAR++TR+K  L++A+LPGKLAD +  DP  SELF+VEG+SAGGSAKQGRSR
Sbjct: 360 ERARTAAKRAREVTRKKSGLEVANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSR 419

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
             QAILP+RGKILNVE+A  D++L++QEI +L TALGTG G D FD++K RYHK+IIMTD
Sbjct: 420 LTQAILPIRGKILNVEKASMDRILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTD 478

Query: 506 ADVDG 510
           A VDG
Sbjct: 479 AGVDG 483


>gi|325578618|ref|ZP_08148718.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159854|gb|EGC71984.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 632

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 226/647 (34%), Positives = 338/647 (52%), Gaps = 22/647 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKVEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHADQSLEVIDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG+    L V        TGT V F P+   F  +
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGVKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSK 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F+   L+H LR  + L S ++I  +DK +         Y+ G+  +++      + L +
Sbjct: 178 NFSVSRLRHLLRAKAVLCSGLEIKFVDKVNNTE--DVWCYQDGLSDYLTEAVNGFETLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P   +      ++  A +   +G       + N IP   GGTH++GLR  L   +T Y 
Sbjct: 236 KPFVGEFKGSTEAVSWALLWLPEGGELIAESYVNLIPTVQGGTHVNGLRQGLLNAMTEYC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  DD  +    +LS+KM D +F+ QTKE+L S +    V   + D  
Sbjct: 296 EFRNKLPRG-VKLTADDIWDRCAYILSLKMQDAQFAGQTKERLSSRQSAVFVAGVLKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WL ++  +A  + +  + ++        A     RK ++   +LPGKLADC+ ++ +K
Sbjct: 355 SLWLNQNVQDADRLAEMAISSAQ---RRLNAAKKVVRKKLVSGPALPGKLADCASQNLEK 411

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVASDQVLGSTEIHDI--AVALG 469

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I  D+ D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY I
Sbjct: 470 IDPDNEDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRI 529

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
             GK + Y  DE   E  L      +        KG+         +D +   +  +   
Sbjct: 530 DLGKEVFYALDENEKEAILERLKGKKGTLNVQRFKGL-------GEMDPSQLRETTMDPN 582

Query: 605 YPNHDKTFIEQAVISGVFNCESDQE-INVSLASKLANRLNFIAEKSE 650
                +   +     G    E     +    A    N L    ++ +
Sbjct: 583 TRRLVQLTYDLEEDQGAATLELMDMLLAKKRAEDRKNWLQTNGDQVD 629



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 724 DTIFS--IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI---TDASQAD-DL 776
           + I     G+KG +++QR+KGLGEM+ SQL ETT++P+TR L+++      D   A  +L
Sbjct: 545 EAILERLKGKKGTLNVQRFKGLGEMDPSQLRETTMDPNTRRLVQLTYDLEEDQGAATLEL 604

Query: 777 FSRLMGDE-VEPRREFIQENSLPSAL 801
              L+  +  E R+ ++Q N     L
Sbjct: 605 MDMLLAKKRAEDRKNWLQTNGDQVDL 630


>gi|182435491|ref|YP_001823210.1| DNA topoisomerase IV subunit B [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178464007|dbj|BAG18527.1| putative B subunit of topoisomerase IV [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 708

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 236/683 (34%), Positives = 347/683 (50%), Gaps = 48/683 (7%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V
Sbjct: 22  SSNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDQIEV 80

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG S
Sbjct: 81  ILHDDASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGAS 140

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVV-TGSAGNDTGT 171
           VVNALS+ L + + R    + +SF  G+        P         L          TGT
Sbjct: 141 VVNALSARLDVEVDRNSATHSISFRRGVPGMFTEQGPDSPFDPANGLRKGKRVPKTRTGT 200

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---PREITMFYKG 227
            V +     IF      N DTL  R R+ +FL   + I + D+R  +     E T  + G
Sbjct: 201 RVRYWADRQIFLKDARLNLDTLHQRARQTAFLVPGLTIIVRDERGLDGEGKTEETFRFDG 260

Query: 228 GIEAFVSYLDRHK----------KPLMQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  YL + K              +  + +   R +++         +D+A+RW  G
Sbjct: 261 GISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDRGHMTATEVTRELAVDIALRWGTG 320

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   V  F N I    GGTH++G   +LT+ +   +  +   +  +  ++ DD  EG T+
Sbjct: 321 YDTTVRSFVNIIATPKGGTHVTGFERSLTKTVNEALRSAKMLRVAEDDIVKDDALEGLTA 380

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLD 384
           V+++++ +P+F  QTKE L +S    +V   V   L A+L     +AK     +++K + 
Sbjct: 381 VVTVRLAEPQFEGQTKEVLGTSAANRIVAGVVAKELKAFLTSTKRDAKAQARAVLEKAVA 440

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R+
Sbjct: 441 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARN 500

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KI+++ 
Sbjct: 501 SEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKIVLLV 559

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      E
Sbjct: 560 DADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNE 619

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +     +S          +    A              +   +E +    
Sbjct: 620 LRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTMDPRHRTLRRINIGDLESSEQVF 679

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                ++        +  A  L+
Sbjct: 680 DLLMGNEVAPRKEFITSSAATLD 702



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+    RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 609 DKYVYTYSDNELRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 668

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   ++ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 669 IGDLESSEQVFDLLMGNEVAPRKEFITSSA--ATLD 702


>gi|239982746|ref|ZP_04705270.1| DNA topoisomerase IV subunit B [Streptomyces albus J1074]
 gi|291454594|ref|ZP_06593984.1| DNA topoisomerase IV subunit B [Streptomyces albus J1074]
 gi|291357543|gb|EFE84445.1| DNA topoisomerase IV subunit B [Streptomyces albus J1074]
          Length = 707

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 231/683 (33%), Positives = 346/683 (50%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIEVI 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V DNGRGIP D+  + G+S  EV++T+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVLTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL--------------DNPLVVTGS-AGNDTGTE 172
           VNALS+ L + + R G  + +SF  G+                + L      A   TGT 
Sbjct: 140 VNALSARLDIEVDRGGATHAISFRRGVPGAFAKTGVDAPFEAASGLRKVKKVAKARTGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V +     IF      +  TL  R R+ +FL   + + + D+          E +  + G
Sbjct: 200 VRYWADRQIFLKDAKLDLATLHQRARQTAFLVPGLTLVVRDEYGLGDGGSKGEESFRFDG 259

Query: 228 GIEAFVSYLDRHK----------KPLMQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  YL   +          K   +  + +      ++         +D+A+RW  G
Sbjct: 260 GISEFCEYLADDRALCDVLRLSGKGTFKETVPVLDDFGQMTPTEVTRELGVDIALRWGTG 319

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   +  F N I    GGTH++G   +LTR +   +  +   +  +  ++ DD  EG T+
Sbjct: 320 YDTKIRSFVNIIATPKGGTHVTGFERSLTRTMNEVLRSAKLLRVAEDDIVKDDALEGLTA 379

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLD 384
           V+++++ +P+F  QTKE L +S    +V   V   L A+L     +AK     +++K + 
Sbjct: 380 VVTVRLAEPQFEGQTKEVLGTSAANRIVSQVVAKELKAFLTSTKRDAKAQARAVMEKAVA 439

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D ++SELF+VEGDSA G+AK  R+
Sbjct: 440 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARN 499

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FD++  RY KII++ 
Sbjct: 500 SEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDLDAARYGKIILLV 558

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDGAHIR LLLT F R M  ++ +G ++   PPL+ I     +    +YV      E
Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVESGRVFAAVPPLHRIELVQPKRGQDKYVYTYSDRE 618

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +   + DS          +    A              +   ++ +    
Sbjct: 619 LRDTLMEFQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINIADLDSSEHVF 678

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                ++        +  A  L+
Sbjct: 679 DLLMGNEVAPRKEFITSSAATLD 701



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L DT+    RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 608 DKYVYTYSDRELRDTLMEFQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 667

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   ++ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 668 IADLDSSEHVFDLLMGNEVAPRKEFITSSA--ATLD 701


>gi|269836116|ref|YP_003318344.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
 gi|269785379|gb|ACZ37522.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
          Length = 674

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/638 (36%), Positives = 357/638 (55%), Gaps = 29/638 (4%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y    I++L+G++A++ RP MYIG T G +GLHH+I+E LDNA DE++ GY   I V ++
Sbjct: 34  YSGADIRVLEGIEAIRTRPGMYIGST-GTTGLHHLIWEALDNATDEAIAGYGKNIWVEID 92

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGI--SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
            DG  TV D  RGIP D  +  G     A VIMT  H+GGKF Q +YK +GGLHGVG +V
Sbjct: 93  RDGWVTVRDEARGIPFDPKEINGKTLPTATVIMTVPHSGGKFEQGAYKTAGGLHGVGATV 152

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           +NALS  L+L I R+G  +  +F  G+      +T      TGT++ +L   +IF+    
Sbjct: 153 INALSERLELTIWRDGQQFFQTFTRGVP-GKHTITPCDPKRTGTQLRWLFDREIFADPAV 211

Query: 188 NY--DTLQHRLRELSFLNSSVQISLIDKRSP--EPREITMFYKGGIEAFVSY---LDRHK 240
            Y  D ++ RLR  ++LN  +   L        E  E T   + G+  +V      D+  
Sbjct: 212 GYQRDVVESRLRAAAYLNRGIAYHLRIWDDDAGEMVEQTFHSERGLVDYVEELRPRDKES 271

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +PL +  + I  +RD++ I++A++ N G    V+ F N +   +GGTH SG ++ALT+ +
Sbjct: 272 QPLFKEVVAIAETRDDVVIEVAVQPNRGERTRVVSFANGVRTIEGGTHESGFQAALTKVL 331

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
                +       KR    D  REG  +++S+K+ +P+F  QTK +L +S V  +V S V
Sbjct: 332 NDQAIRLG--VTKKREFDADLIREGLVAIVSVKLTNPQFEGQTKNRLTNSGVDGIVRSVV 389

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-----RKGVLDIASLPGKLA 415
            D L+ W+E +   A+  V+ +      RDAA+ A  L       R G L  A++  K  
Sbjct: 390 GDALTRWMEANESAAREWVRTLEQRRKARDAAKAAARLVMTGKSRRNGALLDAAISDKFI 449

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
            C+ +DP+++EL+LVEGDSAGGSA QGR  + QAIL L GK LNV RA  +++  ++EI 
Sbjct: 450 PCNTKDPERAELYLVEGDSAGGSASQGRFSDFQAILKLSGKPLNVARANIERVAKNEEIR 509

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           TL+  +GTG  + +FDI++LR+HKIIIMTDADVDG HI+ LLLT F +++P LI  G +Y
Sbjct: 510 TLLQVIGTGS-RQAFDISRLRFHKIIIMTDADVDGMHIQALLLTLFLQELPQLIERGHIY 568

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           +  PPLY + +   + +++D+E+L +++  +    E++ +     +  +           
Sbjct: 569 LAAPPLYSVRQNGKVTWLRDDEALREWMKGRKGPFELKRYKGLGEMNPRE---------- 618

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
             +  +        +  +E A ++     E  ++ N  
Sbjct: 619 LRETTMDPERRRLRRVTLEDAALAERMVYELMEDTNAE 656



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRS 761
            + S+  NG    +    +L + +   GRKG   ++RYKGLGEMN  +L ETT++P+ R 
Sbjct: 573 PLYSVRQNGKVTWLRDDEALREWMK--GRKGPFELKRYKGLGEMNPRELRETTMDPERRR 630

Query: 762 LLRVKITDASQADDLFSRLMGD-EVEPRREFIQENS-LPSALDI 803
           L RV + DA+ A+ +   LM D   E RR F+ + +     +D+
Sbjct: 631 LRRVTLEDAALAERMVYELMEDTNAEGRRTFLAQRARKYQEIDV 674


>gi|148361407|gb|ABQ59285.1| DNA gyrase subunit B [Mycoplasma arginini]
          Length = 535

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 222/537 (41%), Positives = 317/537 (59%), Gaps = 24/537 (4%)

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           ++ GYA  I+VTL+ D    + DNGRG+P D+H     SA E I+T LHAGGKF+  +YK
Sbjct: 1   AMAGYATEISVTLHPDNFIEIEDNGRGMPVDIHPSTQKSAVETILTVLHAGGKFDSSNYK 60

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG-NDTGTEV 173
           VSGGLHGVG SVVNALS   ++ +KR G ++   + N G    PL V       +TGT +
Sbjct: 61  VSGGLHGVGASVVNALSDSFEVWVKRNGKLHYQKYENGGKPQEPLKVISEVPEKETGTRI 120

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P   +     F++ T+   ++++++LN  ++ ++ D      +       GGI  +V
Sbjct: 121 KFHPDYTVMDKIAFDFGTISDHIKQVAYLNKGLKFNITDLTKNTKKTYCF--DGGIIDYV 178

Query: 234 SYLDRHKKPLMQSPIRIQG------------------SRDNISIDLAMRWNDGYHENVLC 275
             L++ KK +    I   G                   R +I +++A ++N+ Y   V+ 
Sbjct: 179 KELNKGKKTINTDVIYALGSFTDFDKPNEDDINNKPAKRVDILVEVAFQYNEAYQSTVIS 238

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH +G   ++ R    Y E++   K ++  +  +D +EG  +V+SIK  
Sbjct: 239 YANNIQTTEGGTHENGFYDSIVRIFNKYAEENKLLKGNE-KISKEDSKEGLIAVISIKHS 297

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP F  QTK K  S+  R      V++ L  +L E+P  AK I+ K L +   R AA  A
Sbjct: 298 DPVFDGQTKSKFGSANARYATNKVVSEVLERYLAENPNVAKNIINKCLQSQRARLAANAA 357

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++ +R+K  ++ + LPGKLADCS ++ +  ELF+VEG+SAGGSAK GR+R  QAILPLRG
Sbjct: 358 KEASRKKDGMEFSGLPGKLADCSSKNAELRELFIVEGNSAGGSAKGGRNRSIQAILPLRG 417

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K++N E+    K LS+QEI T+I ALGTGIG+D F+INKL+YHKIIIMTDADVDGAHI T
Sbjct: 418 KVINAEKNDKVKFLSNQEIQTIIHALGTGIGED-FNINKLKYHKIIIMTDADVDGAHIST 476

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           LLLTFF+R +  LI  GF+YI  PPLY I  GK  +Y  ++   E+ L      + I
Sbjct: 477 LLLTFFYRYLKPLIEYGFVYIAMPPLYKIVSGKVTEYAYNDLQKEEILAKLEDKKNI 533


>gi|145637577|ref|ZP_01793234.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittHH]
 gi|145269263|gb|EDK09209.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittHH]
          Length = 632

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 228/645 (35%), Positives = 340/645 (52%), Gaps = 23/645 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFASKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D H  E +S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDTHPTESVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L V        TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  IDK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            P     +G+ + +S    +   +G       + N IP   GGTH++GLR  L   I  +
Sbjct: 236 KPFVGEFKGTNEAVSW-ALLWLPEGSELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  +  + +LS+KM D +F+ QTKE+L S +    V   + D 
Sbjct: 295 CEFRNLLPRG-VKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDA 353

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +
Sbjct: 354 FSLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLE 410

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+ELFLVEGDSAGGSAKQ R RE QAILPLRGKILN      D++L S EI  +  A+  
Sbjct: 411 KTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI--AVAL 468

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           GI  DS D+++LRY K+ I+ DAD DG HI TLL   F R  P L+ +G +Y+  PPLY 
Sbjct: 469 GIDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYR 528

Query: 544 ITRGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRNFIDD--ALKIDK 599
           I   K + Y  DE   E     +     +         G ++ + LR    D    ++ +
Sbjct: 529 IDLNKEVFYALDESEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQ 588

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           L  D   +     +E   +  +   +   E   +      ++++ 
Sbjct: 589 LTYDLGEDQGSDTLE---LMDMLLAKKRSEDRKNWLQAKGDQVDL 630



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 8/55 (14%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            LD             +KG  ++QR+KGLGEMN SQL ETT++P+TR L+++   
Sbjct: 538 ALDESEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYD 592


>gi|296270359|ref|YP_003652991.1| DNA topoisomerase [Thermobispora bispora DSM 43833]
 gi|296093146|gb|ADG89098.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM
           43833]
          Length = 690

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 236/657 (35%), Positives = 337/657 (51%), Gaps = 44/657 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     + Y A  + +L GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+L GY
Sbjct: 1   MTAVRAEAGYTARHLSVLDGLEAVRKRPGMYIGSTDS-RGLMHCLWEIVDNAVDEALSGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V L  DGS  V DNGRGIP D+    G+   E++ TRLHAGGKF   SY  +GGL
Sbjct: 60  CTRIEVELYPDGSIEVRDNGRGIPVDIEPRTGLPGVELVYTRLHAGGKFGGGSYGATGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------DNPLVVTGSA- 165
           HGVG SVVNALSS L + + R+G ++++SF  G+                + L   G   
Sbjct: 120 HGVGASVVNALSSRLDVEVDRDGRVHQISFRRGVPGIFDGEGPNAKFRKKSGLRDGGPTE 179

Query: 166 GNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              TGT V + P   IF    + + D ++ RLR+ +FL   + + L D R  E  E T  
Sbjct: 180 PGVTGTRVRWWPDRKIFLPDAEISLDEVRVRLRQTAFLVPGLTLMLRDGRGEEVVEETFA 239

Query: 225 YKGGIEAFVSYLDRHK----------KPLMQSPIRIQGSRDNI---------SIDLAMRW 265
           ++GGI  F  +L   +                 + +   + ++          +D+A+RW
Sbjct: 240 FQGGIAEFTEFLAPDEPVCDVLRLQGTGHFHETVPVLDEQGHMVLTEVERELEVDVALRW 299

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
             GY   V  F N I    GGTH++G   AL R +   + ++   +     VI +D  EG
Sbjct: 300 GKGYDTVVRSFVNVIATPKGGTHVAGFERALVRTVNEQLRETRLLRNGDEPVIKEDVLEG 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKK 381
            T+V++++MP+P+F  QTKE L ++    +V   V+  L A         K     +++K
Sbjct: 360 LTAVVAVRMPEPQFEGQTKEILGTAAASRIVAHVVSRELKALFATPKRGQKQQLRAVLEK 419

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           ++ A+  R AAR  RD  RRK  L+ ++LP KL DC   D ++SELF+VEGDSA G+AK 
Sbjct: 420 IVAAAKARIAAREQRDNQRRKSALENSALPAKLVDCRSDDVERSELFIVEGDSALGTAKL 479

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
            R  E QA+LP+RGKILNV++A    ML + E   +I  +G G G+  FD++  RY KII
Sbjct: 480 ARDSEFQALLPIRGKILNVQKASVSDMLKNAECAAIIQVVGAGSGRT-FDLSAARYGKII 538

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESL 559
           +M DADVDGAHIR LLLT F R M  +I  G ++   PPL+ I        Q        
Sbjct: 539 LMADADVDGAHIRCLLLTLFHRYMRPMIEAGRVFAAVPPLHRIEILNPGKGQDKYLYTYS 598

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
           +  L       E       + V     L   +D     +  +   +    +  IE A
Sbjct: 599 DAELHRVLADLERRGKRWKEPVQRYKGLGE-MDADQLAETTMDPRHRVLRRVRIEDA 654



 Score =  138 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 2/67 (2%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QL ETT++P  R L RV+I DA +A+ +F+ LMG EV PRREFI +N
Sbjct: 620 VQRYKGLGEMDADQLAETTMDPRHRVLRRVRIEDAEEAERIFNLLMGSEVGPRREFIVQN 679

Query: 796 SLPSALD 802
           +  +A+D
Sbjct: 680 A--AAID 684


>gi|284109084|ref|ZP_06386476.1| DNA gyrase, B subunit [Candidatus Poribacteria sp. WGA-A3]
 gi|283829831|gb|EFC34124.1| DNA gyrase, B subunit [Candidatus Poribacteria sp. WGA-A3]
          Length = 457

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/434 (52%), Positives = 303/434 (69%), Gaps = 5/434 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           + ++ S Y A+ I++L+GL+AV+KRP+MYIG T G  GLHH++YEV+DN++DE + GY +
Sbjct: 29  EEVEQSGYGAEQIRVLEGLEAVRKRPAMYIGST-GADGLHHLVYEVVDNSVDEHMAGYGE 87

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I V+L +DGS TV+DNGRGIPT LH  +  SAAEV +T LHAGGKF Q +Y VSGGLHG
Sbjct: 88  TIEVSLEIDGSVTVTDNGRGIPTGLHPTQNKSAAEVALTVLHAGGKFEQGAYTVSGGLHG 147

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+SVVNALS WL+L I ++G ++E  +  G     L VTG      GT++TF P   IF
Sbjct: 148 VGISVVNALSEWLELEIWQDGQVFEQVYHRGTAAASLQVTGVTK-KRGTKITFKPDETIF 206

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              D ++D L  RLREL+FLN  + ISL DKRS + +     YKGGI +FV +L+  K P
Sbjct: 207 ETVDCSFDVLAQRLRELAFLNKGLSISLADKRSQKEQ--VFCYKGGIVSFVDHLNEAKTP 264

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L   PI I   + +  +++A+++NDGY EN+  F NNI  ++GGTHL G ++ALTR I S
Sbjct: 265 LH-KPIFISVEKPDAMLEVALQYNDGYAENLFSFANNINTREGGTHLIGFKAALTRTINS 323

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y   +   KKD  S+ GDD REG TSV+S+K+  P+F  QTK KL +SEV+ +VE  VN+
Sbjct: 324 YASANDLLKKDMDSLTGDDVREGLTSVVSVKVRAPQFEGQTKAKLGNSEVKGIVEVAVNE 383

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           GL  + EE+P  AK I+ K  DA+  R+AAR+A+DL RRK  LD  SLPGKLADCSE+DP
Sbjct: 384 GLGTYFEENPAVAKRIIGKAADAARAREAARKAKDLIRRKSALDGGSLPGKLADCSEKDP 443

Query: 423 KKSELFLVEGDSAG 436
             SELF+VEGDSAG
Sbjct: 444 ALSELFIVEGDSAG 457


>gi|19909603|dbj|BAB86997.1| DNA gyrase subunit B [Halobacterium salinarum]
          Length = 443

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 232/460 (50%), Positives = 308/460 (66%), Gaps = 18/460 (3%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
            GLHH++YEV+DN+IDE+L GY D I VTL+ DGS +V+D+GRGIP   H+E    A EV
Sbjct: 1   RGLHHLVYEVVDNSIDEALAGYCDRIDVTLHDDGSVSVTDDGRGIPVATHEEYDRPAVEV 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           I+T LHAGGKF+ KSY+VSGGLHGVGVSVVNALS  L + + R+G  Y   F  G     
Sbjct: 61  ILTVLHAGGKFDAKSYQVSGGLHGVGVSVVNALSERLAVEVSRDGARYREQFERGEPVTD 120

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G + +D+GT + F P S+IF    +++ TL++RLREL+FLNS V+I+L D      
Sbjct: 121 LQHVGDS-DDSGTLIRFRPDSEIFETTAYDFSTLENRLRELAFLNSGVEITLTD------ 173

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    GI  FV YL+  +  L    I  QG  D IS+++AM+ ++    +   F N
Sbjct: 174 ---------GIREFVEYLNETRNALHDDVIYFQGEDDGISVEIAMQASEDVQSSTHAFAN 224

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMPDP 337
           NI  ++GGTHL+G ++ALTR +  Y   +    +    ++ GDD REG T+V+S+K PDP
Sbjct: 225 NINTREGGTHLTGFKTALTRTVNDYANDNNLLSELDGENLTGDDIREGLTAVISVKHPDP 284

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL +SEVR +VE  VNDGL  + EE+P  AK +V+  ++A+  R AA++A +
Sbjct: 285 QFEGQTKTKLGNSEVRGIVERAVNDGLGTYFEENPATAKAVVRTAVEAAKARKAAKKAEE 344

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           LTRRK  L   SLPGKLADC  + P+ +ELF+VEGDSAGGSAKQGR+   QAILPL GKI
Sbjct: 345 LTRRKSALGSTSLPGKLADCQSKAPEDAELFVVEGDSAGGSAKQGRNPGFQAILPLGGKI 404

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           LNVE+ R D++L   E+  +ITALGTGIG D FDI++LRY
Sbjct: 405 LNVEKHRLDRILEHDELRHIITALGTGIG-DEFDIDELRY 443


>gi|329120357|ref|ZP_08249024.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327462312|gb|EGF08638.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 721

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/598 (35%), Positives = 314/598 (52%), Gaps = 31/598 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS N   S Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 61  MSRN---SQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 113

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS----YKV 116
           AD I V ++ DGS +V DNGRGIP  +H  EG+   E++ TRLHAGGKFN+KS    Y  
Sbjct: 114 ADRIEVEIHADGSLSVRDNGRGIPVGIHPTEGLPVIELVFTRLHAGGKFNKKSGEGAYAF 173

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ ++F  G +  PL   G     D+GTEV  
Sbjct: 174 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIAFSGGDVIEPLHEAGKCAAKDSGTEVRV 233

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-----GGIE 230
            P    F   +++   L+  LR  + L   V +SL      E +  T  +       G  
Sbjct: 234 WPDGKYFESPNYSIAELERLLRAKAVLLPGVTVSLTRPVKGEAQPQTQVWHYPEGLKGYL 293

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISID-----LAMRWNDGYHENVLCFTNNIPQKDG 285
             +    +   PL      +    +    +      A+ W +        + N IP   G
Sbjct: 294 NDLISEAQEAVPLFACENYLSDGHNGDFSEGEGAAFALTWLEEGSCANESYVNLIPTPLG 353

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+ + + +++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 354 GTHEAGLKQAVFQAVNNFINLHNLLPRG-VKVQSDDVFGKVAFVLSARVLDPQFQGQTKD 412

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 413 KLTNRDALKLVAAVSGDPLELWLNQNVEYGKKIAELAIRQAQARMRSVKK---IEKKKGS 469

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 470 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 529

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F+R
Sbjct: 530 DQLFGNAEIHDISVAIGVDPHSANDSPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYR 589

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             P LI +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I      +GV
Sbjct: 590 HFPKLIADGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDGILERLQKEGV 644



 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQ 772
                +L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LLRV I +    +
Sbjct: 630 NELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLRVAIPEGAGEE 689

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              +F +LMG  E   RR +++     + +D+
Sbjct: 690 TYGIFVKLMGKGEAAARRSWMEREGDTAEVDV 721


>gi|94502310|ref|ZP_01308787.1| DNA gyrase B subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94451137|gb|EAT14085.1| DNA gyrase B subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 602

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 233/560 (41%), Positives = 334/560 (59%), Gaps = 33/560 (5%)

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DESL G+ D I VT++ D S TV DNGRGIP +LH++EGISA E++MT++ AGGKF+  S
Sbjct: 1   DESLSGFCDKIYVTIHKDNSITVLDNGRGIPVELHEKEGISALELVMTKIGAGGKFDNNS 60

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YK SGGLHGVG+S VNALSS L  +I R G IY   +  G+  + L + G + N  GT++
Sbjct: 61  YKFSGGLHGVGISCVNALSSKLIAKIFRNGKIYVQKYSRGVPISKLEIIGDSKNQRGTQI 120

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
           TF     IF    +NY  L++RLRELSFLN  + ISL+D+R    +   ++   F K GI
Sbjct: 121 TFKADKFIFKKISYNYSILKNRLRELSFLNKGLSISLLDERKIYKTGFFKKNHFFSKKGI 180

Query: 230 EAFVSYLDRHKK----------PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
           + F+ +++++K+            ++    ++ ++ NI+++L MR+N  Y E +  + NN
Sbjct: 181 KEFLMFIEKNKESIIENYKSKKSRIKDFFYLKKNKKNINLELVMRYNSSYKEKIFSYVNN 240

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH+SGL+ ALT+    Y  K+   +  K  + G    EG T++L+IK+ +P+F
Sbjct: 241 INTSEGGTHISGLKKALTKTFKKYFSKNR--RFKKLKISGGYFIEGLTAILTIKIINPKF 298

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KLV+ E+  +VE  V    +++LE++PL  K I+ KV  ++  R A +R R+L 
Sbjct: 299 EGQTKNKLVNYEIIGLVEKIVKKKFNSFLEKNPLYLKKILNKVFLSAKARQAYKRVRELI 358

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           + K      +LP KLADCS ++P   EL+LVEGDSAGG+AKQGR R+ QA+LPLRGKILN
Sbjct: 359 KTKTS-KKNNLPIKLADCSSKNPNLCELYLVEGDSAGGTAKQGRERKFQAVLPLRGKILN 417

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI----------IIMTDADVD 509
           VE++  +K+  ++EI  +  ALG       F   K    K+          IIMTDAD+D
Sbjct: 418 VEKSIKNKIFENEEIKNIFLALGV------FFFKKKNIIKLNIKKIRYKKIIIMTDADID 471

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G+HI TL+LTFFFR M  LI  G++YI  PPL+ I   K   Y  + +  E  L    L 
Sbjct: 472 GSHISTLVLTFFFRYMRILIEKGYIYIATPPLFLIKNYKKKIYAWNYKEREKILKKSLLK 531

Query: 570 EEIELFCDSKGVISKNDLRN 589
                     G ++   L  
Sbjct: 532 GISIQRYKGLGEMNAEQLWE 551



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIG 730
               L  +  F    +Y RI   +      T    +    K KI           +    
Sbjct: 474 HISTLVLTFFF----RYMRILIEKGYIYIATPPLFLIKNYKKKIYAWNYKEREKILKKSL 529

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
            KGIS+QRYKGLGEMNA QLWETT+NP  R+L +V I +   A+ +FS LMG+ V PR++
Sbjct: 530 LKGISIQRYKGLGEMNAEQLWETTMNPINRTLRKVTIHNIKIANKIFSMLMGENVLPRKQ 589

Query: 791 FIQENSLPSALD 802
           FI+ N+L + +D
Sbjct: 590 FIETNALFAKID 601


>gi|225023582|ref|ZP_03712774.1| hypothetical protein EIKCOROL_00441 [Eikenella corrodens ATCC
           23834]
 gi|224943677|gb|EEG24886.1| hypothetical protein EIKCOROL_00441 [Eikenella corrodens ATCC
           23834]
          Length = 657

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 214/627 (34%), Positives = 315/627 (50%), Gaps = 30/627 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y   SI++LKGL+ VK+RP MY   TD  +   H+  E +DNA DE+L G+A  I V
Sbjct: 2   TKQYSESSIKVLKGLEPVKERPGMYT-RTDSPT---HICQEAIDNAADEALGGFASRIDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN----QKSYKVSGGLHG 122
            ++ DGS +VSDNGRGIP  LH EE +   E++ TRLHAGGKFN      +Y  SGGLHG
Sbjct: 58  EIHEDGSLSVSDNGRGIPVGLHPEENVPVVELVFTRLHAGGKFNKTSGDGAYAFSGGLHG 117

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDI 181
           VGVSV NALS  L++ ++REG  Y ++F+ G +  PL  TG     D+GT +   P +  
Sbjct: 118 VGVSVTNALSRRLEVAVRREGCEYRIAFVGGDVVEPLTETGKCPAKDSGTTLRIWPDARY 177

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F   +++   ++  LR  + L   V ++L    +  P   T  Y  G+E ++  L   ++
Sbjct: 178 FESPNYDIAEIERLLRAKAVLLPGVTVTLTRWHNGLPETQTWHYPDGLEGYLKTLLAEQE 237

Query: 242 PLMQ---SPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
             +        + GS          +  A+ W +        + N IP   GGTH +GL+
Sbjct: 238 NTLPLLTLQNHVSGSHHGDFADGEGVSCALTWLEEGRITTESYVNLIPTPAGGTHEAGLK 297

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            AL   +++++       +    +  DD       VLS++M DP+F  QTK+KL + +  
Sbjct: 298 QALFNAVSNFITHHNLLPRG-VKIQSDDVFNRVAFVLSVRMLDPQFQGQTKDKLTNRDAL 356

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V S   D +  WL ++    K I +        ++  R  + + +RKG   I+ LPGK
Sbjct: 357 KLVASLAGDPVELWLNQNLEAGKKIAELA--IKQAQERMRSVKKIEKRKGS-GISVLPGK 413

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC   D +++ELFLVEGDSAGGSAK  R R  QAILPLRGK+LN      D++ ++ E
Sbjct: 414 LTDCESEDIRENELFLVEGDSAGGSAKLARDRNTQAILPLRGKVLNSFEVHRDQLFANTE 473

Query: 474 IGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           I  +  A+G     +    +   LRY KI I++DADVDG+HI+ LLLT F+R  P LI  
Sbjct: 474 IHDISVAIGVDPHGEGDSPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPELIRR 533

Query: 532 GFLYIIKPPLYGIT-------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           G +Y+ +PPL+ +        +     Y  D+  LE  L         E           
Sbjct: 534 GHIYVAQPPLFRVDVAAQGRKKTARKFYALDQTELEGILEKLRKEGLRENQYSISRFKGL 593

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKT 611
            ++         +    +     H   
Sbjct: 594 GEMNPDQLKDTTMHPDTRRLLRVHIPE 620



 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI-TDASQ-AD 774
              +L+ +   G +    S+ R+KGLGEMN  QL +TT++PDTR LLRV I   +S+   
Sbjct: 568 LEGILEKLRKEGLRENQYSISRFKGLGEMNPDQLKDTTMHPDTRRLLRVHIPEHSSEPTH 627

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           ++F +LMG  E   RR +++     + LDI
Sbjct: 628 NVFVKLMGKGESAQRRSWMEAEGDKAELDI 657


>gi|162606284|ref|XP_001713657.1| DNA gyrase subunit B [Guillardia theta]
 gi|13794577|gb|AAK39952.1|AF165818_160 DNA gyrase subunit B [Guillardia theta]
          Length = 684

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 245/631 (38%), Positives = 369/631 (58%), Gaps = 10/631 (1%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSC 74
           I +L+GL+ V++RP ++IG T G  G HH++YE++DN++DES+ G+ + + V +N D S 
Sbjct: 49  ITVLEGLEPVRRRPGVFIGST-GLKGFHHLVYEIVDNSVDESMAGFCEKVDVIINSDKSV 107

Query: 75  TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW 134
           T+ DNGRGIPTDLH     +A E ++T LHAGGKF    YKVSGGLHGVGVSVVN LS +
Sbjct: 108 TIRDNGRGIPTDLHPITNKTALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNGLSEY 167

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
           L +  +R      M F+ G   +   ++        GT + F P   IF  +      + 
Sbjct: 168 LNINTQRNQRKIGMRFVRGKKISECNISSFKKNIINGTTINFKPDYQIFFSEFDFDSYVI 227

Query: 194 -HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RL EL+FLNS++++ L D+RS   +     + GGI  +++ +  +KK L    I  + 
Sbjct: 228 GGRLNELAFLNSNLKLLLEDRRSKIIKSSLFLHDGGIMEYINEMTINKKRLHNPIILSKI 287

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
             ++      +  ++ Y EN+L F NNI   +GGTH+ G +  +T+ +    +K   SK+
Sbjct: 288 FNNSQIEIGFVWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSKKKIKSKE 347

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
              S+ G+  REG T ++++K  +P F  Q K KL + +++ +VE+ + +       E+ 
Sbjct: 348 KLNSISGEFIREGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGEIHFIENN 407

Query: 373 LEAKIIV-KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
                IV +K + A    +A+++A++L R+K +L+  +LPGKL+DCSE++P+ SE+F+VE
Sbjct: 408 SNLLNIVLEKAISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQFSEIFIVE 467

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQ R R  QAILPLRGKI+N+E+    K+ ++ EI +LI+ALG G+  +  D
Sbjct: 468 GDSAGGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLGVRGNDED 527

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT------ 545
           ++ LRYHKIIIMTDADVDGAHIRTLLLTFF+R    LI  GF+YI  PPLY I       
Sbjct: 528 LSNLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKIENKKNKN 587

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
             K+ QY   E  LE  + +   ++ I+ F     ++ +   +  +   ++I K IK   
Sbjct: 588 LDKNTQYCYSEGELEYIIQSSHFNKNIQRFKGLGEMMPEQLWKTTMSPEMRILKKIKLSD 647

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                   E  + S V   +   +I  SL  
Sbjct: 648 AKRADKIFEVLMGSKVPERKKFIQIQASLIK 678



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 49/71 (69%)

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
           L+ I        ++QR+KGLGEM   QLW+TT++P+ R L ++K++DA +AD +F  LMG
Sbjct: 601 LEYIIQSSHFNKNIQRFKGLGEMMPEQLWKTTMSPEMRILKKIKLSDAKRADKIFEVLMG 660

Query: 783 DEVEPRREFIQ 793
            +V  R++FIQ
Sbjct: 661 SKVPERKKFIQ 671


>gi|194339101|gb|ACF49466.1| GyrB [Amycolatopsis regifaucium]
          Length = 464

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 207/467 (44%), Positives = 296/467 (63%), Gaps = 16/467 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++ EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP D+H +E     EV++T
Sbjct: 1   HHLVQEVVDNSVDEAMAGHATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SY VSGGLHGVGVSVVNALS  L   +K  G  +   + + +    L  
Sbjct: 61  VLHAGGKFDSDSYAVSGGLHGVGVSVVNALSKKLLAEVKYGGRSWRQEYTDQLP-GELED 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A + TGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  +    
Sbjct: 120 LGPA-DGTGTTITFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETE 178

Query: 222 -------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                        T  Y GG+E FV +++  K P+  + I  +     + +++AM+WN+G
Sbjct: 179 EDASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHPNVISFEAKGTGLEVEVAMQWNNG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +
Sbjct: 239 FTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P E K I+ K + ++  
Sbjct: 299 IVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTETKTIINKSISSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMYQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           AILP+RGKI+NVE+AR D++L + E+ +LITALGTGI  D FD+ KL
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI-HDEFDLEKL 464


>gi|254386996|ref|ZP_05002276.1| DNA topoisomerase IV subunit B [Streptomyces sp. Mg1]
 gi|194345821|gb|EDX26787.1| DNA topoisomerase IV subunit B [Streptomyces sp. Mg1]
          Length = 706

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 233/682 (34%), Positives = 348/682 (51%), Gaps = 48/682 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGYCDHIEVI 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHEDSSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVVTGS-AGNDTGTE 172
           VNALS+ L + + R  + + +SF  G+        P         L      A   TGT 
Sbjct: 140 VNALSARLDVEVDRNSSTHAISFRRGVPGMFTEQGPDSPFDPANGLRKVKRVAKGKTGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---PREITMFYKGG 228
           V +     IF      + + L  R R+ +FL   + + + D+R  +     E T  + GG
Sbjct: 200 VRYWADRQIFLKDARLSLEHLYQRARQTAFLVPGLTLVVRDERGIDGAGKTEETFRFDGG 259

Query: 229 IEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDGY 269
           I  F  YL + K              +  + +   R +++         +D+A+RW  GY
Sbjct: 260 ISEFCEYLAQDKGVCDVLRLTGAGTFKETVPVLDDRGHMTPTEVTRELGVDIALRWGTGY 319

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
             NV  F N I    GGTH+SG   ++ + +   +  +   +  +  V+ DD  EG T+V
Sbjct: 320 ETNVKSFVNIIATPKGGTHVSGFERSVAKTVNEVLRSAKLLRVAEDDVVKDDAMEGMTAV 379

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDA 385
           +++++ +P+F  QTKE L +S    +V + V   L A+L     + K     +++K++ A
Sbjct: 380 VTVRLAEPQFEGQTKEVLGTSAATRIVAAVVAKELKAFLTSTKRDDKQQARSVMEKIVAA 439

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ ++  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+ 
Sbjct: 440 ARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARNS 499

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KI+++ D
Sbjct: 500 EFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKIVLLVD 558

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLED 561
           ADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      E 
Sbjct: 559 ADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNEL 618

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                    +   + DS          +    A              +   ++ A     
Sbjct: 619 RQTLLEFQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPRFRTLRRINIGDLDSAEQVFD 678

Query: 622 FNCESDQEINVSLASKLANRLN 643
               ++        +  A  L+
Sbjct: 679 LLMGNEVAPRKEFITGSAATLD 700



 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+    RK +    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 607 DKYVYTYSDNELRQTLLEFQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPRFRTLRRIN 666

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   A+ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 667 IGDLDSAEQVFDLLMGNEVAPRKEFITGSA--ATLD 700


>gi|194339073|gb|ACF49452.1| GyrB [Amycolatopsis halotolerans]
          Length = 466

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 220/469 (46%), Positives = 301/469 (64%), Gaps = 16/469 (3%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++
Sbjct: 1   LHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDIHPKEQKPTLEVVL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   IK  G  +   + + I   PL 
Sbjct: 61  TILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTDQIP-GPLE 119

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
             G A  DTGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R P+   
Sbjct: 120 DLGPAT-DTGTTITFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVPDEET 178

Query: 221 IT-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
                            Y GG+E FV +++  K P+ QS I        + +++AM+WN+
Sbjct: 179 EEDAAGKPIRVKEKVYCYPGGLEDFVKHINGSKDPIHQSVISFDAKGTGLEVEVAMQWNN 238

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G+  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  
Sbjct: 239 GFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLA 298

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++SIK+ +P+F  QTK KL +SE ++ V+   N+ L  W E +P EAK I+ K + +S 
Sbjct: 299 AIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSSQ 358

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AAR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR    
Sbjct: 359 ARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMY 418

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           QAILP+RGKI+NVE+AR D++L + E+ +LITALGTGI  D FDI+KLR
Sbjct: 419 QAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI-HDDFDISKLR 466


>gi|186476877|ref|YP_001858347.1| DNA topoisomerase IV subunit B [Burkholderia phymatum STM815]
 gi|184193336|gb|ACC71301.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia phymatum STM815]
          Length = 661

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 226/674 (33%), Positives = 329/674 (48%), Gaps = 40/674 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  +H EE +   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHADHSVSVEDDGRGIPFGMHPEERVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + R+G + E+SF +G +  PL V     A   +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAELSFSHGDVIKPLQVRAATKADKKSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
                 F   +     LQ  LR  + L   V++ LI++++ E +         G      
Sbjct: 177 WADPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLINEKTGERQSWKYEDGLRGYLMEGM 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                  PL +     + SR N             + W++        + N IP   GGT
Sbjct: 237 AGSDLLIPLFEGERYAESSRSNEETFAEGEGAAWVVAWSEEGPLTRESYVNLIPTPAGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +GLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 297 HEAGLRDGLFQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V SF    L  WL +H    K +   V+  +  R  A +      ++    +
Sbjct: 356 NSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQK---VEKRKSSGV 412

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC   +  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 413 AVLPGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWETERDR 472

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT FF+  
Sbjct: 473 LFANNEVHDISVAIGVDPHNPDDTVDLSNLRYGKICILSDADVDGSHIQVLLLTLFFKHF 532

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----EEIEL 574
           P LI  G +++ +PPL+ +       +     Y  DE  LE  L           +    
Sbjct: 533 PQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRESQWSIS 592

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
                G +S   L +       ++   +   P      ++             +    S 
Sbjct: 593 RFKGLGEMSAEQLWDT-----TMNPDTRRLSPVALGE-LDFDATVTRMTMLMGKGEAASR 646

Query: 635 ASKLANRLNFIAEK 648
            S L  + N +   
Sbjct: 647 RSWLEEKGNQVEAD 660



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L  V +   D     
Sbjct: 572 LEAILDKLRKDGVRESQWSISRFKGLGEMSAEQLWDTTMNPDTRRLSPVALGELDFDATV 631

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 632 TRMTMLMGKGEAASRRSWLEEKGNQVEADI 661


>gi|311337327|gb|ADP89913.1| DNA gyrase subunit B [Amycolatopsis ultiminotia]
          Length = 470

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 216/473 (45%), Positives = 298/473 (63%), Gaps = 16/473 (3%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAE 97
           E GLHH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP DLH +E     E
Sbjct: 1   ERGLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDLHPKEQKPTLE 60

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           V++T LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   IK  G  +   + + I   
Sbjct: 61  VVLTILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTDQIP-G 119

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           PL   G A  +TGT +TF   S+IF    +N++ +  RL+E++FLN  + +SL D+R  +
Sbjct: 120 PLEDLGPAT-ETGTTITFWADSEIFETTTYNFENISRRLQEMAFLNKGLTLSLRDERVAD 178

Query: 218 PREIT-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
                               Y GG+E FV +++  K P+  S I        + +++AM+
Sbjct: 179 EEAEQDAEGKQARVKEKVYCYPGGLEDFVKHINGSKDPIHASVISFDAKGTGLEVEVAMQ 238

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WN G+  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD RE
Sbjct: 239 WNTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVRE 298

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + 
Sbjct: 299 GLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLTDWFERNPAEAKTIINKSIS 358

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           +S  R AAR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR 
Sbjct: 359 SSQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRD 418

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
              QAILP+RGKI+NVE+AR D++L + E+ +LITALGTGI  DS   +  RY
Sbjct: 419 SMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDDSTLRS-CRY 470


>gi|302537373|ref|ZP_07289715.1| DNA gyrase subunit B [Streptomyces sp. C]
 gi|302446268|gb|EFL18084.1| DNA gyrase subunit B [Streptomyces sp. C]
          Length = 706

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 232/682 (34%), Positives = 349/682 (51%), Gaps = 48/682 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+ D I V 
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALGGFCDHIEVI 79

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ D S  V DNGRGIP D+  + G+S  EV+MT+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 80  LHDDASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-----DNP---------LVVTGS-AGNDTGTE 172
           VNALS+ L + + R  + + +SF  G+        P         L      A   TGT 
Sbjct: 140 VNALSARLDVEVDRNSSTHAISFRRGVPGVFTEQGPESPFDPANGLRKAKRIAKGKTGTR 199

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---PREITMFYKGG 228
           + +     IF      + +TL  R R+ +FL   + I + D+R  +     E T  + GG
Sbjct: 200 IRYWADRQIFLKDARLSLETLYQRARQTAFLVPGLTIVVRDERGIDGAGKTEETFRFDGG 259

Query: 229 IEAFVSYLDRHK----------KPLMQSPIRIQGSRDNIS---------IDLAMRWNDGY 269
           I  F  YL + K              +  + +   R +++         +D+A+RW  GY
Sbjct: 260 ISEFCEYLAQDKAVCDVLRLTGTGTFKETVPVLDDRGHMTPTEVTRELGVDIALRWGTGY 319

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
              V  F N I    GGTH+SG   ++T+ +   +  +   +  +  V+ DD  EG T+V
Sbjct: 320 ETGVKSFVNIIATPKGGTHVSGFERSVTKTVNEVLRSAKLLRVAEDDVVKDDAMEGMTAV 379

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDA 385
           +++++ +P+F  QTKE L +S    +V + V   L A+L     + K     +++K++ A
Sbjct: 380 VTVRLAEPQFEGQTKEVLGTSAATRIVAAVVAKELKAFLTSTKRDDKQQARAVMEKIVAA 439

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ ++  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+ 
Sbjct: 440 ARTRIAARQHKEAQRRKTALETSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARNS 499

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FDI+  RY KI+++ D
Sbjct: 500 EFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRT-FDIDAARYGKIVLLVD 558

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLED 561
           ADVDGAHIR LLLT F R M  ++  G ++   PPL+ I     +    +YV      E 
Sbjct: 559 ADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNEL 618

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                    +   + D+          +    A              +   ++ A     
Sbjct: 619 RQTLLEYQRKNIRYKDAIQRYKGLGEMDADQLAETTMDPRHRTLRRINIGDLDSAEQVFD 678

Query: 622 FNCESDQEINVSLASKLANRLN 643
               ++        +  A  L+
Sbjct: 679 LLMGNEVAPRKEFITGSAATLD 700



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L  T+    RK I    ++QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 607 DKYVYTYSDNELRQTLLEYQRKNIRYKDAIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 666

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D   A+ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 667 IGDLDSAEQVFDLLMGNEVAPRKEFITGSA--ATLD 700


>gi|320093848|ref|ZP_08025690.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979199|gb|EFW10700.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 705

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 231/662 (34%), Positives = 347/662 (52%), Gaps = 56/662 (8%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             + S Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+LEG+ D 
Sbjct: 6   QTKASDYSARHLSVLEGLEAVRKRPGMYIGSTD-HKGLMHCLWEIIDNAVDEALEGHCDT 64

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V L+ D S +VSDNGRG+P D     G+S  EV+ T+LHAGGKF   SY  +GGLHGV
Sbjct: 65  IDVRLHPDHSASVSDNGRGVPVDEVPGIGLSGVEVVYTKLHAGGKFGGGSYGAAGGLHGV 124

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTG 163
           G SVVNALS+ + +++ R    YEM F  G                       + L   G
Sbjct: 125 GASVVNALSARMDVQVDRGSKTYEMCFRRGEPGEFDDSRQRTPNSPFTPFTDQSRLKTVG 184

Query: 164 SAGN-DTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
                 TGT V F     IF   + F++++L  R R+ +FL   + I+ +D+R  E R  
Sbjct: 185 KVKRTKTGTRVRFWADFQIFPATEGFSWESLLARARQTAFLVPGLTINCVDERGEEERSE 244

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----------------------RDNISI 259
           +  + GG+  F ++        +     I G                           S+
Sbjct: 245 SFRFDGGVVDFANW--LATDGPVTDTWHIMGEGAYTETVQVLDADTGHLTASELERVCSV 302

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK---DKRS 316
           D+A+RW  GY  +V  F N I    GGTH++G   A+ R + + ++K+    K       
Sbjct: 303 DIALRWGIGYDTSVRSFVNIIATPKGGTHVAGFEQAVLRVLRAQIDKNSRKLKVGAKDGR 362

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
              DD   G T+V++++ P+P+F  QTKE L + ++RSVV   V D L A L     + K
Sbjct: 363 PEKDDVLAGMTAVVTVRFPEPQFEGQTKEILGTPQIRSVVSKVVGDWLGAKLASPKRDDK 422

Query: 377 ----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +++KV+     R +AR  ++++R+K  L+ +SLP KLADC   D  ++ELF+VEG
Sbjct: 423 QQASQLMEKVVGEMKARVSARIHKEISRKKNALETSSLPAKLADCRLADVAETELFIVEG 482

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSA G+AK  R+   QA+ P+RGKILNV++A    ML++ E   +I  +G G G+  FD+
Sbjct: 483 DSALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRT-FDL 541

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
              RY K+I+MTDADVDGAHIRTLLLT FFR M  ++  G +Y   PPL+ I      + 
Sbjct: 542 ESARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGKGRR 601

Query: 553 VKDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
            ++      +  +++ L+   +     K  I +      +D     +  +   + +  + 
Sbjct: 602 KREYVYTYSEDELHRRLAALRKSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSLRRI 661

Query: 612 FI 613
            +
Sbjct: 662 TL 663



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 13/187 (6%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +     ++   ++ AN +  I   S +++         ++      V    +    
Sbjct: 507 ILNVQKASTADMLANAECANIIQVIGAGSGRTFDLESARYGKVILMTDADVDGAHIRTLL 566

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSL------ICNGDKIKITGPCSLLDTIFSIGRKGI 734
               F      + + RI      +  +          + +       L   + ++ + G 
Sbjct: 567 LTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGKGRRKREYVYTYSEDELHRRLAALRKSGR 626

Query: 735 S----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEP 787
           +    +QRYKGLGEM+A QL ETT++   RSL R+ + D      A+D+F  LMG  V P
Sbjct: 627 TWKEPIQRYKGLGEMDADQLAETTMDRAHRSLRRITLADEEALRRAEDVFELLMGSTVGP 686

Query: 788 RREFIQE 794
           RREFI E
Sbjct: 687 RREFIVE 693


>gi|148361411|gb|ABQ59287.1| DNA gyrase subunit B [Mycoplasma gateae]
          Length = 532

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 223/529 (42%), Positives = 321/529 (60%), Gaps = 21/529 (3%)

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           ++ G+A  I VTL+ +    + DNGRG+P D+H     SA E I+T LHAGGKF+  +YK
Sbjct: 1   AMAGFASEINVTLHPNNFIEIEDNGRGMPVDIHPSTQKSAVETILTVLHAGGKFDSSNYK 60

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG-NDTGTEV 173
           VSGGLHGVG SVVNALS   ++ +KR G ++   + N G  +  L V G    N+TGT +
Sbjct: 61  VSGGLHGVGASVVNALSDSFEVWVKRNGKLHYQKYENGGKPNEALKVIGEIDLNETGTRI 120

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P   +    DF++ T+   ++++++LN  ++ +LID    +  + T  + GGI  +V
Sbjct: 121 KFHPDYTVMDRIDFDFGTISDHIKQVAYLNKGLKFNLIDLT--KNTKKTFCFDGGIVDYV 178

Query: 234 SYLDRHKKPLMQSPIRIQG---------------SRDNISIDLAMRWNDGYHENVLCFTN 278
             L++ KK +    I   G                + +I +++A ++N+ Y   V+ + N
Sbjct: 179 KELNKGKKTINSDVIYALGSFTDVDKPSDESKQSKKVDILVEVAFQYNEAYQSTVISYAN 238

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTH SG   ++ R    Y E++    K    +  +D +EG  +V+SIK  DP 
Sbjct: 239 NIQTTEGGTHESGFYDSIVRIFNKYAEENK-LFKASEKISKEDSKEGLIAVISIKHSDPV 297

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK K  S+  R      V++ L  +L E+P  AK I+ K L +   R AA  A++ 
Sbjct: 298 FDGQTKSKFGSANARYATNKVVSEVLERYLAENPNIAKNIINKCLQSQRARLAANAAKEA 357

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           +R+K  ++ + LPGKLADCS ++ +  ELF+VEG+SAGGSAK GR+R  QAILPLRGK++
Sbjct: 358 SRKKDGMEFSGLPGKLADCSSKNAEVRELFIVEGNSAGGSAKGGRNRSIQAILPLRGKVI 417

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N E+    K LS+QEI T+I ALGTGIG+D F+INKL+YHKIIIMTDADVDGAHI TLLL
Sbjct: 418 NAEKNDKVKFLSNQEIQTIIHALGTGIGED-FNINKLKYHKIIIMTDADVDGAHISTLLL 476

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           TFF+R +  LI  GF+YI  PPLY I  G++++Y  ++   E+ L    
Sbjct: 477 TFFYRYLKPLIEYGFVYIAMPPLYKIVSGRTVEYAYNDLQKEEILSKLE 525


>gi|282854010|ref|ZP_06263347.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes J139]
 gi|282583463|gb|EFB88843.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes J139]
          Length = 698

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 233/684 (34%), Positives = 344/684 (50%), Gaps = 59/684 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M     +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY
Sbjct: 1   MRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIFDNGVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              ITVTL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGL
Sbjct: 60  GRRITVTLEKAGSILVTDEGRGIPVDVEPRTGLSGLEVVYTKLHAGGKFGGGAYNVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTGSAG 166
           HGVG SVVNA+S  L + + R+  ++ MSF  G+         D P      +   G A 
Sbjct: 120 HGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAK 179

Query: 167 N-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V + P   IF      ++  L  R R+ +FL   ++I + D+R          
Sbjct: 180 RGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGD 239

Query: 217 --EPREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS------ 258
             E    TM + GGI  F  Y          +    +      + +      ++      
Sbjct: 240 VLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDR 299

Query: 259 ---IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +D+A+RW  GY   V  F N I    GGTH+ G    L R  ++ +E +   K  + 
Sbjct: 300 DLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEE 359

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            V  DD  EG T+V+++ + +P+F  QTKE L +  VR +V   V D ++A+L       
Sbjct: 360 IVK-DDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAAD 418

Query: 376 K----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           K     +++KV++AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VE
Sbjct: 419 KPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVE 478

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSA G+A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD
Sbjct: 479 GDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKT-FD 537

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRG 547
           +++ RY K+I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       + 
Sbjct: 538 LDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKR 597

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
              +Y+      +       L+++   F + +      ++         +D   +     
Sbjct: 598 GMDKYLYTYTDADYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI 657

Query: 608 HDKTFIEQAVISGVFNCESDQEIN 631
              T  + A   G F      E+ 
Sbjct: 658 ---TVDDAAEAEGTFEILMGNEVA 678



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 728 SIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +KG+     QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+E
Sbjct: 617 QLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEILMGNE 676

Query: 785 VEPRREFIQENS--LPSA-LD 802
           V PR++FI E +  L +  +D
Sbjct: 677 VAPRKQFIVEGAYRLDAEQID 697


>gi|311337321|gb|ADP89910.1| DNA gyrase subunit B [Amycolatopsis sp. S3.6]
          Length = 455

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 207/457 (45%), Positives = 289/457 (63%), Gaps = 15/457 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T
Sbjct: 1   HHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   IK  G  +   + N +   PL  
Sbjct: 61  ILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTNQVP-GPLED 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A  +TGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +    
Sbjct: 120 LGPAT-ETGTTITFWADDGIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETE 178

Query: 222 T-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                           Y GG+E FV +++  K P+ +S I        + +++AM+WN G
Sbjct: 179 EDAAGKPARIKEKVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAGLEVEVAMQWNTG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +
Sbjct: 239 FTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE ++ V+   N+ L  W E +P EAK I+ K + ++  
Sbjct: 299 IVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           AILP+RGKI+NVE+AR D++L + E+ +LITALGTGI
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI 455


>gi|239775118|gb|ACS15317.1| DNA gyrase subunit B [Kribbella catacumbae]
          Length = 558

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 252/558 (45%), Positives = 346/558 (62%), Gaps = 11/558 (1%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIG T GE GLHH++ EV+DNA+DE+L G+ D I VTL  DG   V DNGRGIP D+ +
Sbjct: 1   MYIGST-GERGLHHLVTEVVDNAVDEALAGFCDKIVVTLLPDGGVRVVDNGRGIPVDIVE 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
            EG  A  V++T LHAGGKF    YKVSGGLHGVGVSVVNALS  L++ + + G  Y  S
Sbjct: 60  SEGKPAVTVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSDRLRVDVNKNGKAYTQS 119

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F  G+ D  L   G   +  GT +TF PS  +F    F+++TL  R RE +FLN  +++ 
Sbjct: 120 FSVGVPDADLADVG-TSDSNGTTITFWPSPGVFESTTFSFETLTTRFREYAFLNKGLELV 178

Query: 210 LIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLA 262
           + D+R       +P E +  Y  G+  +V YL   ++ + +  I  + +   + +S+++A
Sbjct: 179 IRDERLELTEDGQPAEQSFKYDDGLVDYVKYLTGIRETVHRDVIAFEAAQGDNALSLEVA 238

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+W+  + E+V  F N I   +GGTH  G R+ALT  + S+ E     KK +  + GDD 
Sbjct: 239 MQWSGSFQESVHTFANTINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDV 298

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV-KK 381
           REG T+++S+K+ +P+F  QTK KL ++EV+  V+  VND L AW E++P E + I+ K 
Sbjct: 299 REGLTAIISVKLGEPQFEGQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPQEGREIIRKA 358

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
              AS    A +       RKG+L    LPGKL+DC   +P++ E+++VEGDSAGGSAK 
Sbjct: 359 TAAASARIAARKARDLARNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKG 418

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR  + QAILP+RGKILNVE+AR D++L + E+  +I+ALGTGI +D FD  KLRYHKI+
Sbjct: 419 GRDPKYQAILPIRGKILNVEKARIDRVLQNNEVLAIISALGTGIHED-FDEEKLRYHKIV 477

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           IM DADVDG HIRTLLLT  FR M  LI  G +Y  +PPLY I        +   E  +D
Sbjct: 478 IMADADVDGQHIRTLLLTLLFRFMRPLIEGGHVYAAQPPLYKIRWSNQAPELAYTEREKD 537

Query: 562 YLINQSLSEEIELFCDSK 579
            LI   +    +L  D+ 
Sbjct: 538 GLIEAGVEAGKKLPKDNA 555


>gi|66009696|gb|AAY42698.1| GyrB [Burkholderia anthina]
          Length = 614

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 264/618 (42%), Positives = 375/618 (60%), Gaps = 20/618 (3%)

Query: 140 KREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           +R G  + M F  GI              +P++VTG    + GTEV F+    IF   ++
Sbjct: 1   RRNGKKHFMEFHRGIAQDRVLEKVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEY 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++ K  L  + 
Sbjct: 60  HYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTV 117

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
               G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +
Sbjct: 118 FHAIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDN 177

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +
Sbjct: 178 EIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEF 237

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP K E+
Sbjct: 238 LLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEI 297

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG+
Sbjct: 298 YIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGK 357

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
           D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY I  G
Sbjct: 358 DDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAG 417

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K  +Y+KD+  L  +++  +L     +  ++   IS + L       L    +I      
Sbjct: 418 KDERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIDRLSRL 477

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINNSDIL 663
           +D   +E  +     +  S +    + A  L   L+  A K+E      +        + 
Sbjct: 478 YDPAALEAIMDGVAIDL-STEASTEASAKALHAALHDEALKNEVRVVPSYDPVREQRSLN 536

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           V+R   G     V++     +   +     +N           +      + +T   S +
Sbjct: 537 VERTHHGNVRVSVIDQEFQHTADYQQLVATANTFTGLIGEGAVIKRGERSMAVTDFKSAM 596

Query: 724 DTIFSIGRKGISMQRYKG 741
             + +   + +S QRYKG
Sbjct: 597 KWLLADAERNVSKQRYKG 614


>gi|50842524|ref|YP_055751.1| DNA topoisomerase IV subunit B [Propionibacterium acnes KPA171202]
 gi|289425254|ref|ZP_06427031.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289427186|ref|ZP_06428902.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes J165]
 gi|50840126|gb|AAT82793.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202]
 gi|289154232|gb|EFD02920.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289159655|gb|EFD07843.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes J165]
 gi|332675442|gb|AEE72258.1| DNA gyrase subunit B [Propionibacterium acnes 266]
          Length = 698

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 234/684 (34%), Positives = 344/684 (50%), Gaps = 59/684 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M     +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY
Sbjct: 1   MRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIFDNGVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              ITVTL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGL
Sbjct: 60  GRRITVTLEKAGSILVTDEGRGIPVDVEPRTGLSGLEVVYTKLHAGGKFGGGAYNVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTGSAG 166
           HGVG SVVNA+S  L + + R+  ++ MSF  G+         D P      +   G A 
Sbjct: 120 HGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAK 179

Query: 167 N-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V + P   IF      ++  L  R R+ +FL   ++I + D+R          
Sbjct: 180 RGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGD 239

Query: 217 --EPREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS------ 258
             E    TM + GGI  F  Y          +    +      + +      ++      
Sbjct: 240 VLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDR 299

Query: 259 ---IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +D+A+RW  GY   V  F N I    GGTH+ G    L R  ++ +E +   K  + 
Sbjct: 300 DLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEE 359

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            V  DD  EG T+V+++ + +P+F  QTKE L +  VR +V   V D ++A+L       
Sbjct: 360 IVK-DDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAAD 418

Query: 376 K----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           K     +++KV++AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VE
Sbjct: 419 KPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVE 478

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSA G+A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD
Sbjct: 479 GDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKT-FD 537

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRG 547
           +++ RY K+I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       + 
Sbjct: 538 LDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKR 597

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
              +Y+      E       L+++   F + +      ++         +D   +     
Sbjct: 598 GMDKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI 657

Query: 608 HDKTFIEQAVISGVFNCESDQEIN 631
              T  + A   G F      E+ 
Sbjct: 658 ---TVDDAAEAEGTFEILMGNEVA 678



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 728 SIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +KG+     QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+E
Sbjct: 617 QLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEILMGNE 676

Query: 785 VEPRREFIQENS--LPSA-LD 802
           V PR++FI E +  L +  +D
Sbjct: 677 VAPRKQFIVEGAYRLDAEQID 697


>gi|294788048|ref|ZP_06753292.1| DNA topoisomerase IV, B subunit [Simonsiella muelleri ATCC 29453]
 gi|294484341|gb|EFG32024.1| DNA topoisomerase IV, B subunit [Simonsiella muelleri ATCC 29453]
          Length = 657

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 221/670 (32%), Positives = 335/670 (50%), Gaps = 32/670 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   SY   SIQ+LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+A  I
Sbjct: 1   MTKQSYSESSIQVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGFATQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN----QKSYKVSGGL 120
            V +  DGS  V DNGRGIPT LH  E I   E++ T+LHAGGKFN      +Y  SGGL
Sbjct: 57  DVKIQSDGSLCVRDNGRGIPTGLHPIEKIPVVELVFTQLHAGGKFNKKSGDGAYAFSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179
           HGVGVSV NALS+ L++ +KREG I  + F NG +  PL   G     DTGTEV   P+ 
Sbjct: 117 HGVGVSVTNALSTRLEVMVKREGKISRIVFANGDVVEPLTQIGKCAIKDTGTEVRVYPNP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F   ++N   L+  LR  + L   V +SL       P   T  Y  G+ ++++ L  +
Sbjct: 177 KYFESPNYNIGELERLLRAKAVLLQGVTVSLTRHIKGLPETQTWHYPQGLRSYLTDLLEN 236

Query: 240 KKPLMQSP---IRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            + ++        I GS D+         A+ W +        + N IP   GGTH +GL
Sbjct: 237 TQEIVPIFAAENYISGSHDDFNAGEGAAFALTWLEDGSCANESYVNLIPTPLGGTHEAGL 296

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           + A    + +++       +    +  DD       VLS ++ DP+F  QTK+KL + + 
Sbjct: 297 KQAAFNAVNNFIMHHNLLPRG-VKLQSDDVFSRVAFVLSARVLDPQFQGQTKDKLTNRDA 355

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
             +V +  +D L  WL ++    + I +  +  +  R  + +      +K    +A LPG
Sbjct: 356 LKLVATVCSDPLELWLNQNVEIGRKIAELAIKQAQARMRSVKK---IEKKKGSGVAVLPG 412

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DC   D +++ELFLVEGDSAGGSAK  R +  QA+LPLRGK+LN      D++  + 
Sbjct: 413 KLTDCESEDTRENELFLVEGDSAGGSAKLARDKSFQAVLPLRGKVLNSFEVNRDQLFGNA 472

Query: 473 EIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           EI  +  A+G      + D++   LRY KI I++DADVDG+HI+ LLLT F+R  P LI 
Sbjct: 473 EIHDISVAIGIDPHGKNEDVDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPKLIE 532

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           NG +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + K +++  
Sbjct: 533 NGNIYVAQPPLFRVDVNAQSK---TKPARKFYALDQAELDGIL------ERLKKENVKES 583

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                +    + +  P+  K          +      + +  +  S     +      S 
Sbjct: 584 AYSISRFKG-LGEMNPDQLKDTTLHPDTRRLLQVHIPEAMADNTESVFLKLMGKGEASSR 642

Query: 651 KSWHGSINNS 660
           ++W     + 
Sbjct: 643 RAWMEVEGDK 652



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 8/97 (8%)

Query: 712 DKIKITGPCSLL--DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           D+ ++ G    L  + +        S+ R+KGLGEMN  QL +TTL+PDTR LL+V I +
Sbjct: 564 DQAELDGILERLKKENVKESA---YSISRFKGLGEMNPDQLKDTTLHPDTRRLLQVHIPE 620

Query: 770 ASQ--ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           A     + +F +LMG  E   RR +++     + +DI
Sbjct: 621 AMADNTESVFLKLMGKGEASSRRAWMEVEGDKAEVDI 657


>gi|148361409|gb|ABQ59286.1| DNA gyrase subunit B [Mycoplasma gateae]
          Length = 532

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 223/534 (41%), Positives = 322/534 (60%), Gaps = 21/534 (3%)

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           ++ G+A  I VTL+ +    + DNGRG+P D+H     SA E I+T LHAGGKF+  +YK
Sbjct: 1   AMAGFASEINVTLHPNNFIEIEDNGRGMPVDIHPSTQKSAVETILTVLHAGGKFDSSNYK 60

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG-NDTGTEV 173
           VSGGLHGVG SVVNALS   ++ +KR G ++   + N G  +  L V G    N+TGT +
Sbjct: 61  VSGGLHGVGASVVNALSDSFEVWVKRNGKLHYQKYENGGKPNEALKVIGEIDLNETGTRI 120

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P   +    DF++ T+   ++++++LN  ++ +LID    +  + T  + GGI  +V
Sbjct: 121 KFHPDYTVMDRIDFDFGTISDHIKQVAYLNKGLKFNLIDLT--KNTKKTFCFDGGIVDYV 178

Query: 234 SYLDRHKKPLMQSPIRIQG---------------SRDNISIDLAMRWNDGYHENVLCFTN 278
             L++ KK +    I   G                + +I +++A ++N+ Y   V+ + N
Sbjct: 179 KELNKGKKTINSDVIYALGSFTDVDKPSDESKQSKKVDILVEVAFQYNEAYQSTVISYAN 238

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTH SG   ++ R    Y E++    K    +  +D +EG  +V+SIK  DP 
Sbjct: 239 NIQTTEGGTHESGFYDSIVRIFNKYAEENK-LFKASEKISKEDSKEGLIAVISIKHSDPV 297

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK K  S+  R      V++ L  +L E+P  AK I+ K L +   R AA  A++ 
Sbjct: 298 FDGQTKSKFGSANARYATNKVVSEVLERYLAENPNIAKNIINKCLQSQRARLAANAAKEA 357

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           +R+K  ++ + LPGKLADCS ++ +  ELF+VEG+SAGGSAK GR+R  QAILPLRGK++
Sbjct: 358 SRKKDGMEFSGLPGKLADCSSKNAEVRELFIVEGNSAGGSAKGGRNRSIQAILPLRGKVI 417

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N E+    K LS+QEI T+I ALGTGIG+D F+INKL+YHKIIIMTDADVDGAHI TLLL
Sbjct: 418 NAEKNDKVKFLSNQEIQTIIHALGTGIGED-FNINKLKYHKIIIMTDADVDGAHISTLLL 476

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           TF +R +  LI  GF+YI  PPLY I  G++++Y  ++   E+ L      + I
Sbjct: 477 TFLYRYLKPLIEYGFVYIAMPPLYKIVSGRTVEYAYNDLQKEEILSKLEDKKNI 530


>gi|291615236|ref|YP_003525393.1| DNA topoisomerase IV, B subunit [Sideroxydans lithotrophicus ES-1]
 gi|291585348|gb|ADE13006.1| DNA topoisomerase IV, B subunit [Sideroxydans lithotrophicus ES-1]
          Length = 652

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 222/605 (36%), Positives = 327/605 (54%), Gaps = 31/605 (5%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y+  S ++L+GL+ V++RP MY   T+ ES  +H+I EV+DNA DE+L G+A  I VT
Sbjct: 2   ATYNEASFKVLRGLEPVRQRPGMY---TNLESP-NHIIAEVVDNACDEALAGHAKNIFVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN---QKSYKVSGGLHGVG 124
            + DGS +V D+GRGIP  +HKEEG S  EV  T LH+GGKF+     +YK +GGLHGVG
Sbjct: 58  AHADGSVSVKDDGRGIPVGIHKEEGRSVVEVAFTVLHSGGKFDKESDGAYKFAGGLHGVG 117

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183
           V+V NALS  +++ + REG  +E+ F++G+ + PL   G+   N TGT V   P+   F 
Sbjct: 118 VAVTNALSKQVEVTVFREGGQHELRFVDGVAEKPLAKVGTCPKNQTGTMVRAWPNPKYFD 177

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM--FYKGGIEAFVSYLDRHKK 241
             + N   L+  LR  + L   V I+L  +++ E +  T     +G +   +S  +    
Sbjct: 178 APNVNLAQLELSLRSKAVLLPGVTITLNLEKTGETKSWTYPDGLRGYLAEALSEFELATP 237

Query: 242 PLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            L+Q     +G             A+ W+   +     + N IP   GGTH +GLR  + 
Sbjct: 238 ILLQEKFTRKGDTTGFAEGEGASWALTWSAEGNVVRESYVNLIPTPAGGTHEAGLRDGVF 297

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             + ++ E           ++ +D     + VLS K+ DP+F  QTKEKLVS +   +V 
Sbjct: 298 NAVKAFAEIH-SLLPKGVKLVPEDVFSRASFVLSAKVLDPQFQGQTKEKLVSRDALRLVS 356

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + D L  WL EH   AK IV+  +  +  R  + +      +K    +A LPGKL DC
Sbjct: 357 SMIKDPLELWLNEHLEPAKKIVELAIQQAQARMRSAQK---VEKKKGSSVAVLPGKLTDC 413

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S  DP ++ELFLVEGDSAGGSAKQGR++E QA+LPLRGK+LN      D++ ++ EI  +
Sbjct: 414 SSSDPSRTELFLVEGDSAGGSAKQGRNKEFQAVLPLRGKVLNTFEVEKDRLFANNEIHDI 473

Query: 478 ITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
             A+G      +  ++   LRY+ I+IM DADVDG+HI TLLLT F+R    ++  G +Y
Sbjct: 474 AVAIGVDPHAPTDSVDLSGLRYNAILIMADADVDGSHISTLLLTLFYRHFYRVVEAGKIY 533

Query: 536 IIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSE-----EIELFCDSKGVISK 584
           I +PPL+ I       +  S  Y  +E  +   L      +              G +S 
Sbjct: 534 IAQPPLFRIDVPAHGKKQASKIYALNEGEMTGILDRLRKEKIREGSWSISRFKGLGEMSP 593

Query: 585 NDLRN 589
             L +
Sbjct: 594 EQLWD 598



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 722 LLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLF 777
           +LD +     +    S+ R+KGLGEM+  QLW+TTLNPDTR  L VK   A       +F
Sbjct: 566 ILDRLRKEKIREGSWSISRFKGLGEMSPEQLWDTTLNPDTRRALCVKADSASFKATMSIF 625

Query: 778 SRLMGDEVEP--RREFIQENSLPSALDI 803
           + LMG + E   RR +++ +      DI
Sbjct: 626 NMLMGKQ-EASTRRAWLEYHGNEVEADI 652


>gi|325265831|ref|ZP_08132517.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Kingella denitrificans
           ATCC 33394]
 gi|324982469|gb|EGC18095.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Kingella denitrificans
           ATCC 33394]
          Length = 661

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 214/593 (36%), Positives = 317/593 (53%), Gaps = 28/593 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y   SIQ+LKGLD VK+RP MY   TD  +   H+  EV+DNA DE+L G+A  I V 
Sbjct: 5   AAYSESSIQVLKGLDPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGFATRIDVE 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS----YKVSGGLHGV 123
           ++ DGS +V DNGRGIPT LH  E I   E++ T+LHAGGKF++KS    Y  SGGLHGV
Sbjct: 61  IHADGSLSVRDNGRGIPTGLHPVEQIPVVELVFTQLHAGGKFDKKSGGGAYAFSGGLHGV 120

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           GVSV NALSS L++ +KR+G +  + F +G +  PL   G     DTGTEV   P+   F
Sbjct: 121 GVSVTNALSSRLEVTVKRDGQVSRIVFADGYVVEPLAQIGKCAVRDTGTEVRVYPNPKYF 180

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE---ITMFYKGGIEAFVSYLDRH 239
               ++   L+  LR  + L   V +SL      +P      T  Y  G++++++ L  +
Sbjct: 181 ESPTYSIPELERLLRAKAVLLQGVTVSLTRHVKGQPAHPVTQTWHYPQGLQSYLADLLEN 240

Query: 240 KKPLMQSP---IRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            +  +        I GS D+         A+ W +        + N IP   GGTH +GL
Sbjct: 241 AQEAVPVFAAENYISGSHDDFRAGEGAAFALTWLEEGSCANESYVNLIPTPLGGTHEAGL 300

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           + A    + +++       +    +  DD       VLS ++ DP+F  QTK+KL + + 
Sbjct: 301 KQAAFNAVNNFIAHHNLLPRG-VKINSDDVFSRAAFVLSARVLDPQFQGQTKDKLTNRDA 359

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
             +V +  +D L  WL ++    K I    +  +  R  + +      +K    +A LPG
Sbjct: 360 LKLVSAVCSDPLELWLNQNTEIGKKIADLAIKQAQARMRSVKK---IEKKKGSGVAVLPG 416

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      D++  + 
Sbjct: 417 KLTDCESEDIRENELFLVEGDSAGGSAKLARDKSYQAILPLRGKVLNSFEVHRDQLFGNA 476

Query: 473 EIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           EI  +  A+G      + D++   LRY KI I++DADVDG+HI+ LLLT F+R  P L+ 
Sbjct: 477 EIHDISVAIGVDPHGANDDVDLGGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPKLVA 536

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           NG +Y+ +PPL+ +      +    + + + Y ++++    I      + V  
Sbjct: 537 NGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDEAELNAILERLKQENVRE 586



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLMGD-EVEPRRE 790
            S+ R+KGLGEMN  QL +TTL PDTR LL+V+I +  A   +++F +LMG  E   RR 
Sbjct: 589 YSISRFKGLGEMNPDQLKDTTLYPDTRRLLQVRIPEHMAGDTENVFLKLMGKGEAAARRA 648

Query: 791 FIQENSLPSALDI 803
           +++     + LD+
Sbjct: 649 WMEAEGDKADLDV 661


>gi|115381162|gb|ABI96230.1| DNA topoisomerase IV subunit B [Spiroplasma melliferum KC3]
          Length = 554

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 227/559 (40%), Positives = 339/559 (60%), Gaps = 12/559 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G TD   GLHH+++E++DN+IDE+L GY + I + +  + +  V+DNGRG+PT +H   G
Sbjct: 1   GSTD-VRGLHHLVWEIIDNSIDEALAGYCNEIDIIIYKNNAIMVADNGRGVPTGIHSS-G 58

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            S  EVI + LHAGGKF    YK +GGLHGVG SVVNALS+   + I R+  ++ + F N
Sbjct: 59  KSTPEVIFSVLHAGGKFGGDGYKTAGGLHGVGSSVVNALSATFDVTIYRDHKVWSIKFAN 118

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G      +        TGT VTFLP   IF V DF++ T+  R+RE +FLNS V+++L D
Sbjct: 119 GGQVKEPLTKIGTTTKTGTTVTFLPDHKIFKVIDFSFSTISERIRESAFLNSGVKLTLTD 178

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R+ +          G+E F++Y++  KK +    I ++G    I +++A++++  ++EN
Sbjct: 179 QRTDKKVSYLF--NNGLEEFITYMNEDKKSITP-IIMLKGVEKQIEVEIALQYSTEFNEN 235

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +L F NN+   +GG+H+ G R+ LT+ I  Y  K    K+  +++   D REG T+++S+
Sbjct: 236 LLSFANNVKTSEGGSHVVGFRTGLTKVINDYARKEGLLKEKDKNLDSVDTREGLTAIVSV 295

Query: 333 KMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           K+P+   ++  QTK KL + E R  VE+ V      WL E+   A  I++K L A  V +
Sbjct: 296 KIPENLIQYEGQTKGKLGTYEARVAVETIVAKQFGFWLTENKTNAYTIIEKALLARNVCE 355

Query: 391 AARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
            AR+AR+     +K       L GKL     R+   +E+FLVEGDSAGGSAK GR R  Q
Sbjct: 356 EARKAREAARNSKKRGNSDRLLTGKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQ 415

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AILPLRGK++N E+A+   +++++EI  +I A+G G+G   FDIN   Y K+IIMTDAD 
Sbjct: 416 AILPLRGKVINAEKAKLQDLMNNEEINVMINAIGAGVGNG-FDINDANYGKVIIMTDADT 474

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI--TRGKSLQYVKDEESLEDYLINQ 566
           DGAHI+TLLLTFF+R M  LI N  +Y+  PPL+ I  T+ K ++Y  DE  L++ L   
Sbjct: 475 DGAHIQTLLLTFFYRYMRPLIENHRVYLALPPLFKITSTKNKHIEYAWDETELKNKLSQF 534

Query: 567 SLSEEIELFCDSKGVISKN 585
               E++ +     + ++ 
Sbjct: 535 HGKFELQRYKGLGEMNAEQ 553



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 5/133 (3%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +N I       +  +  N   ++           +    
Sbjct: 424 VINAEKAKLQDLMNNEEINVMINAIGAGVGNGFDINDANYGKVIIMTDADTDGAHIQTLL 483

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSI-GRKGISMQ 737
             F +      I ++R+      +  +    +K          L + +    G+    +Q
Sbjct: 484 LTFFYRYMRPLIENHRVYLALPPLFKITSTKNKHIEYAWDETELKNKLSQFHGK--FELQ 541

Query: 738 RYKGLGEMNASQL 750
           RYKGLGEMNA QL
Sbjct: 542 RYKGLGEMNAEQL 554


>gi|227495521|ref|ZP_03925837.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831068|gb|EEH63451.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 704

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 243/666 (36%), Positives = 358/666 (53%), Gaps = 57/666 (8%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+ ++N    SY A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+L
Sbjct: 1   MSETVKNDASQSYTARHLTVLEGLEAVRKRPGMYIGSTD-HRGLMHCLWEIIDNAVDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           EG+ D I VTL+ D S ++SDNGRGIP D  K   +S  EV+ T+LHAGGKF   SY  S
Sbjct: 60  EGHCDHIVVTLHDDYSASISDNGRGIPVDTVKGLNLSGVEVVFTKLHAGGKFGAGSYGSS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DN 157
           GGLHGVG SVVNALS+ L +++ R G  ++MSF  G                      ++
Sbjct: 120 GGLHGVGASVVNALSARLDVQVDRGGKTHQMSFRRGEPGIFDDSKQRTPNSPFTPFLDES 179

Query: 158 PLVVTGSAGN-DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            L + G      +GT V F     IF   + F++++L  R R+ +FL   + +++ID+R 
Sbjct: 180 KLEIVGKVKRGVSGTRVRFWADFQIFPADEGFSWNSLVERARQTAFLVPGLTLTVIDERG 239

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------RD 255
            E  E  + + GG+  FV +L +         + I+G                       
Sbjct: 240 EERVEEVLRFDGGVVDFVDFLAKDGPV--TDTLHIKGEGTFKELVPLVEEGERRVAELER 297

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK--- 312
              +D+AMRW  GY      F N +    GGTH+ G   AL + + ++VEK+    K   
Sbjct: 298 VCEVDIAMRWGVGYDTIDRSFVNIVATPKGGTHVQGFEQALVKVVRAHVEKNARKFKVNA 357

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               V  DD   G T V++++ P+P+F  QTKE L ++ VR VV   V D        + 
Sbjct: 358 KDGRVEKDDILAGLTYVVTVRFPEPQFEGQTKEILGTAPVRQVVSKVVTDFFKERFSSNK 417

Query: 373 LEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E K     +++K++     R +AR  ++++RRK  L+ +SLP KLADC   D ++SELF
Sbjct: 418 REIKQTNDALMEKIVGEMKARVSARIHKEISRRKNALETSSLPAKLADCRSNDVEQSELF 477

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSA G+AK  RS E QA+ P+RGKILNV++     ML++ E   +I  +G G G+ 
Sbjct: 478 IVEGDSALGTAKFARSSEYQALFPIRGKILNVQKKSTADMLANAECAAIIQVIGAGSGRT 537

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            FD+++ RY KI++MTDADVDGAHIRTLLLT FFR M  L+  G +Y   PPL+ I   K
Sbjct: 538 -FDLSQARYGKIVLMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAVPPLHRIEVPK 596

Query: 549 SLQYVKDEES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
             +  K+      +  ++Q L++        K  I +      +D     +  +   +  
Sbjct: 597 QGKKPKELIYTYSEEELHQKLAQLKRQGRTYKEPIQRYKGLGEMDADQLAETTMDPAHRT 656

Query: 608 HDKTFI 613
             +  +
Sbjct: 657 LRRITL 662



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 15/195 (7%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N +     ++   ++ A  +  I   S +++  S      +V      V    +    
Sbjct: 506 ILNVQKKSTADMLANAECAAIIQVIGAGSGRTFDLSQARYGKIVLMTDADVDGAHIRTLL 565

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI--CNGDK----IKITGPCSLLDTIFSIGRKGI 734
               F      + + R+      +  +     G K    I       L   +  + R+G 
Sbjct: 566 LTLFFRYMRPLVEAGRVYAAVPPLHRIEVPKQGKKPKELIYTYSEEELHQKLAQLKRQGR 625

Query: 735 S----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEP 787
           +    +QRYKGLGEM+A QL ETT++P  R+L R+ + D +    A+++F  LMG EV P
Sbjct: 626 TYKEPIQRYKGLGEMDADQLAETTMDPAHRTLRRITLADEAALKQAEEMFELLMGSEVVP 685

Query: 788 RREFIQENSLPSALD 802
           R+EFI   +  S LD
Sbjct: 686 RKEFIVAGA--SELD 698


>gi|271968328|ref|YP_003342524.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270511503|gb|ACZ89781.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 690

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 234/659 (35%), Positives = 332/659 (50%), Gaps = 45/659 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     + Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN +DE+L GY
Sbjct: 1   MTAVSVETGYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIVDNGVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I V L+ DGS  V DNGRGIP D+  + G++  E++ T+LHAGGKF   SY  SGGL
Sbjct: 60  CDRIEVELHADGSIEVRDNGRGIPVDVEPKSGLAGVELVYTKLHAGGKFGGGSYGASGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----DNPLVVTGS----------A 165
           HGVG SVVNALSS L + + R+G I+E+SF  G+      D P                A
Sbjct: 120 HGVGASVVNALSSRLDVEVDRDGQIHEISFRRGVPGVFDGDGPTAKFKKKSGLRDGGKLA 179

Query: 166 GNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              TGT V F     IF    + + D +  RLR+ +FL   + +++ D R  E  E    
Sbjct: 180 RKVTGTRVRFWVDHQIFLPEAEVSLDEIHVRLRQTAFLVPGLTLAVRDSRGEEAVEEEFH 239

Query: 225 YKGGIEAFVSY-----------------LDRHKKPLMQSPIRIQGSRDNIS--IDLAMRW 265
           + GGI  F  +                       P++     +  +       +D+A+RW
Sbjct: 240 FDGGISEFTEFLARDEAVCQVLRLQGVGHFHETVPVLDDLGHMTPTEVQRELTVDVALRW 299

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
             GY   V  F N I    GGTH++G   AL R +   + ++   K     V  +D  EG
Sbjct: 300 GKGYDTTVRSFVNVIATPKGGTHVNGFERALVRTLNEQLRETRLLKNGDAPVSREDILEG 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKK 381
            T V+++++P+P+F  QTKE L +S    +V   V+  L           K      ++K
Sbjct: 360 LTGVVTVRVPEPQFEGQTKEVLGTSAASRIVSHVVSRELKELFTNPSRALKPQLRAALEK 419

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           ++ A+  R AAR  RD  RRK  L+ ++LP KL DC   D  +SELF+VEGDSA G+A+ 
Sbjct: 420 IVAAAKARIAAREHRDNQRRKTALENSALPAKLVDCRSDDVDRSELFIVEGDSALGTARA 479

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
            R  E QA+LP+RGKILNV++A    ML + E   +I  +G G G+  FDI   RY K+I
Sbjct: 480 ARDSEFQALLPIRGKILNVQKASVADMLKNTECAAIIQVIGAGSGRS-FDIEAARYGKVI 538

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK----SLQYVKDEE 557
           +M DADVDGAHIR LLLT F R M  ++  G ++   PPL+ I          +YV    
Sbjct: 539 LMADADVDGAHIRCLLLTLFHRYMRPMVAAGRVFAAVPPLHRIEVTNPGRGQGKYVYCYS 598

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
             E + + + L    + + D           +    A    +             IE+A
Sbjct: 599 DAELHRVLRDLERRGKRWKDPVQRYKGLGEMDADQLAETTMEPRHRTLRRVRIEDIEEA 657



 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 4/96 (4%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
           G  +       L   +  + R+G      +QRYKGLGEM+A QL ETT+ P  R+L RV+
Sbjct: 591 GKYVYCYSDAELHRVLRDLERRGKRWKDPVQRYKGLGEMDADQLAETTMEPRHRTLRRVR 650

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           I D  +A+ +F  LMG +V PRREFI  ++     D
Sbjct: 651 IEDIEEAERIFDLLMGSDVAPRREFIVGSAAEVDRD 686


>gi|148645279|gb|ABR01163.1| DNA gyrase subunit B [Gordonia lacunae]
          Length = 504

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 232/509 (45%), Positives = 314/509 (61%), Gaps = 40/509 (7%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIG T GE GLHH+I+EV+DN++DE++ G+A  + VTL  DG   V D+GRGIPT +
Sbjct: 1   PGMYIGST-GERGLHHLIWEVVDNSVDEAMAGFASRVDVTLLADGGVQVVDDGRGIPTGM 59

Query: 88  HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
           H   G+   EV+MT+LHAGGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E
Sbjct: 60  H-RTGVPTVEVVMTQLHAGGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGYNWE 118

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSV 206
            ++        L   GSA   TGT V F P  +IF     FN +T+  RL+E++FLN  +
Sbjct: 119 QTYSYAKP-GALEQ-GSATRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGL 176

Query: 207 QISLIDKRS----------------------------------PEPREITMFYKGGIEAF 232
            I+L D+R                                    +P+  T  Y  G+  +
Sbjct: 177 TITLTDQRPQAIEPPGDADGDEDGGSTEAAEVVKSEEEKAAAAAKPKTRTYHYPDGLVDY 236

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           + +L+R K+ +  + I      D   +++AM+WN GY E+V  F N I   +GGTH  G 
Sbjct: 237 IKHLNRTKQSIHNTVIGFNAKGDGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGF 296

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALT  +  Y       K+    + GDD REG  +V+S+K+ DP+F  QTK KL ++EV
Sbjct: 297 RAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEV 356

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +  V+   N+ L  W E +P EAKIIVKK +D+S  R AARRAR++ RRK   DI  LPG
Sbjct: 357 KGFVQRTCNEHLGHWFEANPAEAKIIVKKAVDSSQARMAARRAREMVRRKTATDIGGLPG 416

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC   DP K E+++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + 
Sbjct: 417 KLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNA 476

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKII 501
           E+ ++ITA GTGI  D FDI+KLRYHKI+
Sbjct: 477 EVQSIITAFGTGI-HDEFDISKLRYHKIV 504


>gi|295130602|ref|YP_003581265.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|291375117|gb|ADD98971.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes SK137]
          Length = 698

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 234/684 (34%), Positives = 344/684 (50%), Gaps = 59/684 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M     +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY
Sbjct: 1   MRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIFDNGVDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              ITVTL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGL
Sbjct: 60  GRRITVTLEKAGSILVTDEGRGIPVDVEPHTGLSGLEVVYTKLHAGGKFGGGAYNVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTGSAG 166
           HGVG SVVNA+S  L + + R+  ++ MSF  G+         D P      +   G A 
Sbjct: 120 HGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAK 179

Query: 167 N-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V + P   IF      ++  L  R R+ +FL   ++I + D+R          
Sbjct: 180 RGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGD 239

Query: 217 --EPREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS------ 258
             E    TM + GGI  F  Y          +    +      + +      ++      
Sbjct: 240 VLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDR 299

Query: 259 ---IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +D+A+RW  GY   V  F N I    GGTH+ G    L R  ++ +E +   K  + 
Sbjct: 300 DLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEE 359

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            V  DD  EG T+V+++ + +P+F  QTKE L +  VR +V   V D ++A+L       
Sbjct: 360 IVK-DDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAAD 418

Query: 376 K----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           K     +++KV++AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VE
Sbjct: 419 KPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVE 478

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSA G+A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD
Sbjct: 479 GDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKT-FD 537

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRG 547
           +++ RY K+I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       + 
Sbjct: 538 LDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKR 597

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
              +Y+      E       L+++   F + +      ++         +D   +     
Sbjct: 598 GMDKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI 657

Query: 608 HDKTFIEQAVISGVFNCESDQEIN 631
              T  + A   G F      E+ 
Sbjct: 658 ---TVDDAAEAEGTFEILMGNEVA 678



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 728 SIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +KG+     QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+E
Sbjct: 617 QLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEILMGNE 676

Query: 785 VEPRREFIQENS--LPSA-LD 802
           V PR++FI E +  L +  +D
Sbjct: 677 VAPRKQFIVEGAYRLDAEQID 697


>gi|170691864|ref|ZP_02883028.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia graminis C4D1M]
 gi|170143148|gb|EDT11312.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia graminis C4D1M]
          Length = 661

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 230/671 (34%), Positives = 330/671 (49%), Gaps = 34/671 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHADHSVSVEDDGRGIPFGLHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + R+G +  +SF NG +  PL V  +A     +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAALSFANGDVAKPLEVRAAARGEKKSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
             +   F   +     LQ  LR  + L   V+++L+++R+ E +         G      
Sbjct: 177 WANPKYFDSPNLPLGELQRLLRSKAVLLPGVEVTLVNERTGEQQSWKYEDGLRGYLLEGM 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                  PL +     + SR N             + W++        + N IP   GGT
Sbjct: 237 SGSDLLIPLFEGERYAENSRANEETFAEGEGAAWVVAWSEEGPLTRESYVNLIPTPAGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 297 HESGLREGLFQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V SF    L  WL +H    K +   V+  +  R  A +      ++    +
Sbjct: 356 NSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQK---VEKRKSSGV 412

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC   +  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 413 AVLPGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDR 472

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ E+  +  A+G         I+   LRY KI I++DADVDG+HI+ LLLT FF+  
Sbjct: 473 LFANNEVHDISVAIGVDPHSPDDKIDLSNLRYGKICILSDADVDGSHIQVLLLTLFFKHF 532

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           P LI  G + I +PPL+ +       +     Y  D+  LE  L             D++
Sbjct: 533 PQLIERGHVCIARPPLFRVDAPARGKKPAQKLYALDQGELEAILDKLRKDG----VRDTQ 588

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             IS+      +      D  +           + +              +    A+   
Sbjct: 589 WSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATV-ARMTMLMGKGEAASRR 647

Query: 640 NRLNFIAEKSE 650
           N L     + E
Sbjct: 648 NWLEEKGNEVE 658



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 9/92 (9%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRV---KIT-DASQ 772
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L  V   ++  DA+ 
Sbjct: 572 LEAILDKLRKDGVRDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATV 631

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           A  + + LMG  E   RR +++E       DI
Sbjct: 632 A-RM-TMLMGKGEAASRRNWLEEKGNEVEADI 661


>gi|71907496|ref|YP_285083.1| DNA topoisomerase IV subunit B [Dechloromonas aromatica RCB]
 gi|71847117|gb|AAZ46613.1| DNA topoisomerase IV subunit B [Dechloromonas aromatica RCB]
          Length = 662

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 207/581 (35%), Positives = 297/581 (51%), Gaps = 37/581 (6%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + Y A SI++LK L+ VK+RP MY   T       H++ EV+DNA DE+L G+A  I V 
Sbjct: 15  TDYSAASIRVLKDLEPVKERPGMYTRTTCPT----HIVQEVIDNAADEALAGFAKKIAVA 70

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ----KSYKVSGGLHGV 123
           +  DG   VSDNGRGIP ++H EEG  A E++  +LHAGGKFN+     +Y+ SGGLHGV
Sbjct: 71  IRADGVIEVSDNGRGIPVEIHPEEGRPAVELVFCKLHAGGKFNKKESGNAYRFSGGLHGV 130

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIF 182
           GVSV NALS  L++ IKR G I+ ++F  G +  PL   G  G  +TGT V   P    F
Sbjct: 131 GVSVTNALSIRLEVEIKRGGGIHHIAFGAGFVTEPLSRIGDCGQRNTGTTVRIQPDPKYF 190

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
                N   L+H LR  + L  +V + L  +   +       Y+ G+  +++ +      
Sbjct: 191 DSPKVNLGQLEHLLRSKAVLMPNVTVELDIEGQDK---KVWCYENGMADYLNEMMVG--- 244

Query: 243 LMQSPIRIQGSRDNISID---------LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                    G +   + +          A+ W +        + N IP  DGGTH +GL+
Sbjct: 245 -TPVAPIFVGEKYVETANGFAVGEGATWALAWFEEGGGKPESYVNLIPTLDGGTHEAGLK 303

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           + +   I ++ +        K  +  +D     T +LS K+ DP+F  QTKEKL S +  
Sbjct: 304 AGVFEAIKAFADHHAILP-AKVKLAQEDVCGKMTYLLSAKVLDPQFQGQTKEKLTSRDAY 362

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V   V D    WL  H    K I +    A        ++     +K    IA+LPGK
Sbjct: 363 KLVSQMVRDPFELWLNSHADFGKKIAE---LAVKAAQNRMKSTQKIEKKKSSGIATLPGK 419

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC   D  ++E+FLVEGDSAGGSAKQGR +E QA+LPLRGK+LN      D++  + E
Sbjct: 420 LTDCESDDILRNEIFLVEGDSAGGSAKQGRDKETQAVLPLRGKVLNTWEVERDQLFKNNE 479

Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           +  +  A+G          +     LRY +II+M+DADVDG+HI+ LL T F +  P+L+
Sbjct: 480 VHDISVAVGVDPHGIEQIDSVDVTGLRYGRIIVMSDADVDGSHIQVLLFTLFLKHFPALV 539

Query: 530 HNGFLYIIKPPLYGITR----GKSLQYVKDEESLEDYLINQ 566
             G +++ +PPL+ +           Y  DE   E  L   
Sbjct: 540 ERGHIHVAQPPLFRVDVEARGHTRKVYCLDEAEKEQTLQKL 580



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 707 LICNGDKIKITGPCSL-----LDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDT 759
           +   G   K+           L  +   G     I++ R+KGLGEMN  QLWETTL PDT
Sbjct: 556 VEARGHTRKVYCLDEAEKEQTLQKLADEGVSENKITVSRFKGLGEMNPDQLWETTLCPDT 615

Query: 760 RSLL-----RVKITDASQADDLFSRLMGD-EVEPRREFIQE 794
           R L+     R  I + +     F+ LMG  E   RR ++++
Sbjct: 616 RRLVPFQASRETIKEMATT---FTLLMGKGEASGRRAWMEK 653


>gi|194339055|gb|ACF49443.1| GyrB [Amycolatopsis albidoflavus]
          Length = 461

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 208/457 (45%), Positives = 289/457 (63%), Gaps = 15/457 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T
Sbjct: 1   HHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   IK  G  +   + N +   PL  
Sbjct: 61  ILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTNQVP-GPLQD 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A  DTGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +    
Sbjct: 120 LGPAT-DTGTTITFWADGGIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVSDEETE 178

Query: 222 T-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                           Y GG+E FV +++  K P+ +S I        + +++AM+WN G
Sbjct: 179 EDAAGKPARIKEKVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAGLEVEVAMQWNTG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +
Sbjct: 239 FTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE ++ V+   N+ L  W E +P EAK I+ K + ++  
Sbjct: 299 IVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           AILP+RGKI+NVE+AR D++L + E+ +LITALGTGI
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI 455


>gi|70704892|gb|AAZ06864.1| DNA topoisomerase IV subunit B [Acholeplasma hippikon]
          Length = 549

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 243/553 (43%), Positives = 344/553 (62%), Gaps = 20/553 (3%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
            TD   GLHH+++E++DNA+DE L G+ D I+VT+  D S  VSDNGRG+P  +H + GI
Sbjct: 1   STD-GRGLHHLVWEIVDNAMDEVLAGFGDEISVTIKQDNSIEVSDNGRGMPYKMH-QSGI 58

Query: 94  SAAEVIMTRLHAGGKFNQK-SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
              +VI T LHAGGKF  +  YKV+GGLHGVG SVVNALS+ L++ + ++G I++  F +
Sbjct: 59  PTTQVIFTVLHAGGKFGSEGGYKVAGGLHGVGSSVVNALSTALEVTVYKDGGIFKQKFED 118

Query: 153 -GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            G + NPL   G +   TGT V F P   IFS   +NYDT++ RL+E ++L   ++I+LI
Sbjct: 119 GGKIINPLERVGDSK-KTGTTVWFKPDPKIFSTTLYNYDTIKERLKESAYLIKGLKINLI 177

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP---IRIQGSR-DNISIDLAMRWND 267
           D+R  +  + T  Y  GI+A+VS L+  K+ L +        + SR  +I +++A+++ D
Sbjct: 178 DQR--KNVKETFKYDDGIKAYVSQLNESKQTLHEVQLVEGSFKASRGADIEVEVALQYTD 235

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY EN++ F NN+  KDGGTH  G +SALT+ I  Y  K    K+   ++ G D REG T
Sbjct: 236 GYQENIISFVNNVRTKDGGTHEIGFKSALTKVINDYARKYVLIKEKDDNLDGVDIREGLT 295

Query: 328 SVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
           +++S+++P+    F  QTK KL + + R+  ES   +  + +LEE+   +  I+ K L A
Sbjct: 296 AIISLRVPESILEFEGQTKGKLGTPDARNATESVFYEKFNTYLEENRETSNKIIGKALAA 355

Query: 386 SMVRDAARRARDLT--RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +  R+AAR+AR+     +K       L GKL     +D   +ELFLVEGDSAGGSAKQGR
Sbjct: 356 ARAREAARKAREEARDNKKKNKKEMILSGKLTPAQGKDKNINELFLVEGDSAGGSAKQGR 415

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           +R  QAILPLRGK+LN E+   D +L ++EI T+I  +G   G   FDI K  Y K+IIM
Sbjct: 416 NRRFQAILPLRGKVLNTEKTNTDTLLKNEEIATIIHTIGADFG-PDFDIKKCNYKKVIIM 474

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESL 559
           TDAD DGAHI+ LLLTFFFR M  LI +G LYI  PPLY +T    +   + Y   ++ L
Sbjct: 475 TDADDDGAHIQVLLLTFFFRYMRPLIEDGRLYIALPPLYKVTKKRGKKDEIIYAWSDDEL 534

Query: 560 EDYLINQSLSEEI 572
           ++ L     +  I
Sbjct: 535 KEILEMSDSNYNI 547


>gi|194339103|gb|ACF49467.1| GyrB [Amycolatopsis rifamycinica]
          Length = 460

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 205/456 (44%), Positives = 292/456 (64%), Gaps = 15/456 (3%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           H++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T 
Sbjct: 1   HLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEQKPTLEVVLTV 60

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   +K  G  +   + + +   PL   
Sbjct: 61  LHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEVKYGGRSWRQEYTDQVP-GPLEDL 119

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI- 221
           G A ++TGT +TF    +IF    +N++T+  RL+E++FLN  + +SL D+R  +     
Sbjct: 120 GPA-DETGTTITFWADGNIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEA 178

Query: 222 ------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
                       T  Y GG+E FV +++  K P+  S I  +     + +++AM+WN+G+
Sbjct: 179 DAEGKVARVKEKTYCYPGGLEDFVKHINGSKDPIHSSVISFEAKGTGLEVEVAMQWNNGF 238

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
             +V  F N I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG  ++
Sbjct: 239 TPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAI 298

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  R
Sbjct: 299 VSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQAR 358

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AAR+ARDL RRKG LDI  LPGKL DC    P++ EL++VEGDSAGGSAK+GR    QA
Sbjct: 359 MAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQA 418

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ILP+RGKI+NVE+AR D++L + E+ +LITALGTGI
Sbjct: 419 ILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI 454


>gi|68138681|gb|AAY86000.1| GyrB [Burkholderia cenocepacia]
          Length = 613

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 265/617 (42%), Positives = 378/617 (61%), Gaps = 20/617 (3%)

Query: 141 REGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           R+G    M F  G+              +P++VTG    + GTEV F+    IF   +++
Sbjct: 1   RDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV ++++ K  L  +  
Sbjct: 60  YDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEFINKTKSTLHPTVF 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
              G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  + 
Sbjct: 118 FANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNE 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L
Sbjct: 178 IAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP K E++
Sbjct: 238 LETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++
Sbjct: 298 IVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKE 357

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            +++ KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY I  GK
Sbjct: 358 DYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGK 417

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             +Y+KD+  L  +++  +L     +  ++   IS + L       L    +I+     +
Sbjct: 418 DERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIERLSRLY 477

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINNSDILV 664
           D   +E AV+ GV    S +E   + A  L   L+  A K+E      +        + V
Sbjct: 478 DPAALE-AVMDGVVIDLSSEESTEASAKALHAALHDEALKNEVRVVPSYDAVREQRALHV 536

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
           +R   G     V++     +   +     +N  +        +      + +    S + 
Sbjct: 537 ERTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMK 596

Query: 725 TIFSIGRKGISMQRYKG 741
            + +   + +S QRYKG
Sbjct: 597 WLLADAERNVSKQRYKG 613


>gi|194339053|gb|ACF49442.1| GyrB [Amycolatopsis alba]
          Length = 449

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 199/451 (44%), Positives = 288/451 (63%), Gaps = 15/451 (3%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++ EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP D+H +E     EV+
Sbjct: 1   GLHHLVQEVVDNSVDEAMAGFATKVEVTLLSDGGVRVVDDGRGIPVDIHPKEQKPTLEVV 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   +KR G+ +   +I+ I    L
Sbjct: 61  LTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQEYIDQIP-GEL 119

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
              G A  DTGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +  
Sbjct: 120 QDLGPAE-DTGTVITFWADGGIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEE 178

Query: 220 EI-------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                          T  Y GG+E FV +++  K P+  + I  +     + +++AM+WN
Sbjct: 179 TEEDASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHPNVISFEAKGTGLEVEVAMQWN 238

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           +G+  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG 
Sbjct: 239 NGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGL 298

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P E+K I+ K + ++
Sbjct: 299 AAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTESKTIINKSISSA 358

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AAR+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR   
Sbjct: 359 HARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSM 418

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            QAILP+RGKI+NVE+AR D++L + E+ +L
Sbjct: 419 YQAILPIRGKIINVEKARIDRVLKNTEVQSL 449


>gi|134094035|ref|YP_001099110.1| DNA topoisomerase IV subunit B [Herminiimonas arsenicoxydans]
 gi|133737938|emb|CAL60983.1| DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
           [Herminiimonas arsenicoxydans]
          Length = 661

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 222/685 (32%), Positives = 329/685 (48%), Gaps = 47/685 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    ++ Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MATKKSSADYSESSIRVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
              I VTLN DGS +V D+GRGIP  LH EE I   E++ TRLHAGGKF++ S   Y  S
Sbjct: 57  CKHIVVTLNTDGSVSVEDDGRGIPVGLHPEEKIPTVEIVFTRLHAGGKFDKSSGGAYAFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L++ + RE  ++ ++F  G +  PL           +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLEITVWRESGVHTLTFSGGDVIEPLKSRAIARDEKRSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P    F         LQ  LR  + L   V+++L+  +S E +        G+  +++ 
Sbjct: 177 WPDPKYFDSSVIPQAELQRLLRSKAVLLPGVKVTLVHAKSGETQTWQYDQ--GLRGYLTE 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNI----------SIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                          +G +                  + W +        + N IP  +G
Sbjct: 235 SLAQASNAETVIPLFEGEQYANADTEGFAEGEGAAWVVAWTEDGAVVRESYVNLIPTSNG 294

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH SGLR  L   + S+VE           ++ +D     + VLS K+ DP+F  Q KE
Sbjct: 295 GTHESGLREGLFGAVKSFVEMH-SLLPKGVKLLPEDVFARVSFVLSAKVLDPQFQGQIKE 353

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           +L S +   +V ++    L  WL +H    K + + V+  +  R  + +      +K   
Sbjct: 354 RLNSRDAVRLVATYTRPALELWLNQHVDYGKKLAELVIKQAQSRLRSAQK---VEKKKSS 410

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D  ++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      
Sbjct: 411 GVAVLPGKLTDCESSDTSRNEIFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWETER 470

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           D++ ++ EI  +  A+G      +  ++   LRY +I I++DADVDG+HI+ LLLT FF+
Sbjct: 471 DRLFANNEIHDIAVAIGIDPHGKNDTVDFSSLRYGRICILSDADVDGSHIQVLLLTLFFK 530

Query: 524 QMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
             P LI  G + I +PPLY +       +     Y  D+  L                 +
Sbjct: 531 HFPQLIERGHICIARPPLYRVDAPARGKKPIQKIYALDDGELAAIEDKLRKDG----VKE 586

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           S   IS+      ++     +  +           +      G F+ +  +       + 
Sbjct: 587 SAWAISRFKGLGEMNAEQLWETTMNPDTRRLLPVAL------GEFDLDFSEAR----FNM 636

Query: 638 LANRLNFIAEKSEKSWHGSINNSDI 662
           L  +    A ++    HG+   +DI
Sbjct: 637 LMGKGEAAARRTWIEEHGNEAEADI 661



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSRLMGD-EVEPRREFI 792
           + R+KGLGEMNA QLWETT+NPDTR LL V +   D   ++  F+ LMG  E   RR +I
Sbjct: 591 ISRFKGLGEMNAEQLWETTMNPDTRRLLPVALGEFDLDFSEARFNMLMGKGEAAARRTWI 650

Query: 793 QENSLPSALDI 803
           +E+   +  DI
Sbjct: 651 EEHGNEAEADI 661


>gi|6729221|dbj|BAA89732.1| DNA gyrase subunit B [Micromonospora inositola]
          Length = 472

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 227/477 (47%), Positives = 316/477 (66%), Gaps = 12/477 (2%)

Query: 33  GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
           G T GE GLHH++ EV+DNA+DE+L GY DII V L  DG   V+DNGRG P DLH +  
Sbjct: 1   GST-GERGLHHLVQEVVDNAVDEALAGYCDIIDVVLLADGGVRVTDNGRGFPVDLHPKLK 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
               EV +T LHAGGKF+ K+Y VSGGLHGVGVSVVNALS+ +++ I + G ++   + N
Sbjct: 60  KPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVSVVNALSTRMEVEIHKSGFVWRQQYTN 119

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
               +PL   G   N TG+ V F P +D+F   DF++ T+  RL+E++FLN  + I L+D
Sbjct: 120 SKP-SPLEK-GETTNRTGSAVAFWPDADVFETVDFDFQTIYRRLQEMAFLNRGLTIHLLD 177

Query: 213 KR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRW 265
           +R       +PRE+T  YK GI  FV +L+  K P+ ++ ++ +     + +++++AM+W
Sbjct: 178 ERVAEGEEGKPREVTFLYKDGIADFVRHLNASKNPIHKTVVQFEAEDVEEGMAVEIAMQW 237

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        K    + G+D REG
Sbjct: 238 NESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGA-EKKLLKGDEKLSGEDIREG 296

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +P EAK I++K   A
Sbjct: 297 LAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKTIIQKASQA 356

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR  
Sbjct: 357 ARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDP 416

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
             QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 417 RTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 472


>gi|332670667|ref|YP_004453675.1| DNA topoisomerase [Cellulomonas fimi ATCC 484]
 gi|332339705|gb|AEE46288.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas fimi ATCC 484]
          Length = 712

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 237/682 (34%), Positives = 348/682 (51%), Gaps = 66/682 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+
Sbjct: 1   MTTTSPQSGYTARHLSVLEGLEAVRKRPGMYIGTTDS-RGLMHCLWEIIDNSVDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I + L+ D S  V DNGRGIP D+  + G++  EV+ T+LHAGGKF   SY  SGGL
Sbjct: 60  GDRIDIVLHADTSVEVRDNGRGIPVDVEPKTGLTGVEVVFTKLHAGGKFGGGSYGASGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------DNP------------LV 160
           HGVG SVVNALSS L + + R G  + M+F  G           +P            L 
Sbjct: 120 HGVGASVVNALSSRLDVEVDRNGRTHRMTFHRGEPGVFDDAGGVSPEAPFEPFVSGSELA 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE- 217
           V G  A   TGT V +     IF     F+YD L  R R+ SFL   + +++ D+R    
Sbjct: 180 VVGKVARGRTGTRVRYWADRQIFPKTAVFSYDELVTRARQTSFLVPGLTLTVRDERGIPG 239

Query: 218 ------PREITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDN----- 256
                 P E T  + GG+  FV +                      + +   R +     
Sbjct: 240 TPGADGPHEETFHHSGGVVDFVDHLSPDPAVTDTWHLTGTGTFTETVPVLDDRGHMTPQE 299

Query: 257 ----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG--- 309
                 +D+A+RW  GY   V  F N I    GGTHL+G  + L R +   VE +     
Sbjct: 300 VARTCEVDVALRWGTGYETEVRSFVNIIATPKGGTHLAGFETGLLRTVRKAVEANARRLK 359

Query: 310 ---SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                     +  +D   G T+V+++++ +P+F  QTKE L ++ VR++V   ++  L  
Sbjct: 360 ISAKDAATERIEKEDVLAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRAIVAKVLDTELGG 419

Query: 367 WLEEHPLEAKI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
                  E K     ++ KV+     R +AR+ ++++RRK  L+ +SLP KLADC   D 
Sbjct: 420 IFTSTKREHKAHAALLLDKVVGEMRARLSARKQKEISRRKNALESSSLPAKLADCRIDDV 479

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            +SELF+VEGDSA G+AK  RS + QA+LP+RGKILNV++A    ML + E  ++I  +G
Sbjct: 480 DRSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVTDMLKNVECASIIQVIG 539

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G+  F++   RY KI++MTDADVDGAHIRTLLLT FFR M  L+  G +Y   PPL+
Sbjct: 540 AGSGRT-FELEAARYGKIVMMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAVPPLH 598

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF-----IDDALKI 597
            I      +     +    Y  +++         D  G   K+D++ +     +D     
Sbjct: 599 RIELLGGSR-KGGPDDRYIYTYSEAELAATLKRLDRSGKRYKDDIQRYKGLGEMDADQLA 657

Query: 598 DKLIKDFYPNHDKTFIEQAVIS 619
           +  +   +    +  +E A  +
Sbjct: 658 ETTMDPRHRTLRRVTVEAAARA 679



 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A QL ETT++P  R+L RV +  A++A+ +F  LMG +V PR++FI   
Sbjct: 642 IQRYKGLGEMDADQLAETTMDPRHRTLRRVTVEAAARAEQIFELLMGSDVAPRKDFIVAG 701

Query: 796 SLPSALD 802
           +   ALD
Sbjct: 702 A--QALD 706


>gi|19909683|dbj|BAB87037.1| DNA gyrase subunit B [Variovorax paradoxus]
          Length = 497

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 268/501 (53%), Positives = 353/501 (70%), Gaps = 42/501 (8%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGIS 94
           GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V+DNGRGIPT     D H E   S
Sbjct: 1   GLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKH-EPKRS 59

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING- 153
           A+E+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++REG I+E+ F  G 
Sbjct: 60  ASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVMLRLVVRREGKIHELEFSRGF 119

Query: 154 -----------ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
                      +  +P+ + G   +  GTEV FLP ++IF    DF+Y+ L  RLRELSF
Sbjct: 120 VQNRLIETVNGVEVSPMRIIGET-DKRGTEVHFLPDTEIFKENADFHYEILSKRLRELSF 178

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD------ 255
           LN+ V+I L D+RS +         GG++ FV ++++ K  L  +     G +       
Sbjct: 179 LNNGVRIRLKDERSGKE--DDFSGAGGVKGFVDFINKGKTVLHPNVFYAMGEKPADTYGG 236

Query: 256 ----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
               +I +++AM+WN GY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +K
Sbjct: 237 IPGTHIGVEVAMQWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEFAK 296

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K  V GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +L+E 
Sbjct: 297 KAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDYLQER 356

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P +AKII  K+++A+  R+AAR+AR++TRRKGVLD   LPGKLADC E+DP   E++LVE
Sbjct: 357 PNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEVYLVE 416

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI------ 485
           GDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI T+ITALGTGI      
Sbjct: 417 GDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTMITALGTGIGRAGAT 476

Query: 486 ----GQDSFDINKLRYHKIII 502
               G D F++ KLRYH+III
Sbjct: 477 SAGGGADDFNVAKLRYHRIII 497


>gi|119897406|ref|YP_932619.1| DNA topoisomerase IV subunit B [Azoarcus sp. BH72]
 gi|119669819|emb|CAL93732.1| topoisomerase IV subunit B [Azoarcus sp. BH72]
          Length = 657

 Score =  456 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 215/631 (34%), Positives = 317/631 (50%), Gaps = 35/631 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + + +YD  S ++LKGL+ V++RP MY   TD  +   H+I EV+DNA DE+L G+A  I
Sbjct: 1   MTSKTYDESSFRVLKGLEPVRERPGMYT-RTDSPA---HIIQEVIDNAADEALGGFAKKI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN----QKSYKVSGGL 120
            VTL++DGS TV+D+GRGIP  LH EEG+    +  TRLHAGGKF+      +Y  SGGL
Sbjct: 57  HVTLHLDGSVTVADDGRGIPVGLHPEEGVPVVVLAYTRLHAGGKFDKREGNGAYAFSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVGV+V NALS+ +++ +KR+G I+ + F + G     + + G  G  TGT V   P  
Sbjct: 117 HGVGVAVTNALSTRVEVEVKRDGKIHRIDFSDGGENIGAVRIEGDCGRQTGTRVRVWPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-SPEPREITMFYKGGIEAFVSYLDR 238
             F       + L+  LR  + L S V + L  ++ +      T  Y  G+  ++  L  
Sbjct: 177 KYFEAPRVPMNELERLLRSKAVLLSGVSVRLDIEQAAGPALTKTWSYPEGLAGYLKELAG 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDG---------YHENVLCFTNNIPQKDGGTHL 289
             +P+          +     D +    +G                + N IP  +GGTH 
Sbjct: 237 DVEPVAPI---FTAEKYAGKDDASFAPGEGAAWALAWFESAVPSESYVNLIPTVNGGTHE 293

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SGLR+ +   + S++E      +    +  +D     + +LS ++ DP+F  Q KEKL S
Sbjct: 294 SGLRAGVFEAVKSFIEHHTLLPRG-VKLQQEDVCGRMSFLLSARLLDPQFQGQVKEKLNS 352

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            E   +V + + D    WL  H    K I +  +  ++ R    +      +K    +A 
Sbjct: 353 REAVKLVSTQLRDPFEIWLNNHVEAGKAIAELSIKQALARQKNAQK---VEKKKTSGVAV 409

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL+DC   D  ++ELFLVEGDSAGGSAK  R++E QAILPLRGK+ N      D++L
Sbjct: 410 LPGKLSDCESEDIAENELFLVEGDSAGGSAKMARNKETQAILPLRGKVQNAWEIDPDRLL 469

Query: 470 SSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           ++ EI  +  ALG    +     +   LRY KI+IM+DADVDG+HI+TLLLT FFR  P 
Sbjct: 470 ANAEIHDIAVALGVDAHRADSSPDLSGLRYGKIVIMSDADVDGSHIQTLLLTLFFRHFPK 529

Query: 528 LIHNGFLYIIKPPLYGIT-------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           LI NG +Y+ +PPLY +        R     Y  D+  L       +         +   
Sbjct: 530 LIENGHIYVAQPPLYRVDVPAQGKKRPARRLYALDDGELAAIRDRLAQEGFKPDAIEIGR 589

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
                ++         +D   +   P   + 
Sbjct: 590 FKGLGEMNPDQLRETTMDPATRRVLPVQVRA 620



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLL--RVKITDASQADDLFSR 779
           D +   G K   I + R+KGLGEMN  QL ETT++P TR +L  +V+     Q   +F+ 
Sbjct: 573 DRLAQEGFKPDAIEIGRFKGLGEMNPDQLRETTMDPATRRVLPVQVRAEAIEQTLKMFTL 632

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++E       D+
Sbjct: 633 LMGKGEASGRRAWMEEKGDTVEADV 657


>gi|58698129|ref|ZP_00373052.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535375|gb|EAL59451.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 505

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 235/516 (45%), Positives = 333/516 (64%), Gaps = 12/516 (2%)

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G RSALTR I +Y       KK K ++ G+D REG T VLS+KMPDP+FSSQTK+KLV
Sbjct: 1   MAGFRSALTRCINTYATNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLV 60

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSE R+VVES V+D LS  LE  P  A  IV++ + ++  R+AAR+AR+L + K  +DIA
Sbjct: 61  SSEARAVVESIVSDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIA 120

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC E+ P+ SELF+VEG+SAGG+AKQGR+R+ QA+L LRGKILNVER   D++
Sbjct: 121 TLPGKLADCQEKAPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRI 180

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            SS EIG+LITA+G GIG + FDI K RYHKIIIMTDADVDG+HIRTL+LTFFFR M  +
Sbjct: 181 FSSAEIGSLITAIGAGIGSEHFDIEKARYHKIIIMTDADVDGSHIRTLILTFFFRHMREV 240

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  G+LYI +PPLY +T+     Y+KD+E+ E+Y+IN ++         ++     NDLR
Sbjct: 241 IEKGYLYIAQPPLYKVTKNAKDTYIKDDETFEEYIINSAVKRLTLSSTATE----FNDLR 296

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
             ++  + I  + K++     +  +E  +I         ++  +S A  +   L  +  +
Sbjct: 297 LILNKCVSISNISKNYDREIPQNLLESLLIL-------SKKNALSSADDILKYLKLMYSE 349

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
                       +I + ++ +G+ ++++   S +     +      + I   +     L 
Sbjct: 350 YTWEVEIKDEEKEIHISKLFQGLADKYIFALSMLEGKDMQNILSLLDGISNLFNGDSFLK 409

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
               +I+IT P +L   I   G+KG+++QR+KGLGEMNA QLW+TTLNP+ R+LL+V+I 
Sbjct: 410 SQETEIRITSPSTLAKIIMDYGKKGLTLQRFKGLGEMNADQLWDTTLNPEARTLLKVEIK 469

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D  +AD +FS LMGD VEPRR+FI  N+L    +DI
Sbjct: 470 DCEEADSIFSILMGDIVEPRRDFINSNALNVHDVDI 505


>gi|295675917|ref|YP_003604441.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1002]
 gi|295435760|gb|ADG14930.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1002]
          Length = 661

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 225/671 (33%), Positives = 329/671 (49%), Gaps = 34/671 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH +EG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHADHSVSVDDDGRGIPFGLHPDEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + R+G + E+SF +G +  PL V     A   +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAELSFAHGDVAKPLQVRAATKADKKSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
                 F   +     LQ  LR  + L   V+++L+++++ E +         G      
Sbjct: 177 WADPKYFDSPNLPLGELQRLLRSKAVLLPGVEVTLVNEKTGEQQSWKYEDGLRGYLLEGM 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                  PL +     + SR +             + W++        + N IP   GGT
Sbjct: 237 NGSDLLIPLFEGERYAESSRSSEETFAEGEGAAWVVAWSEEGPLTRESYVNLIPTPAGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 297 HESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V SF    L  WL +H    K +   V+  +  R  A +      ++    +
Sbjct: 356 NSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQK---VEKRKSSGV 412

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC   +  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 413 AVLPGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWETERDR 472

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT FF+  
Sbjct: 473 LFANNEVHDISVAIGVDPHNPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLTLFFKHF 532

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           P LI  G + + +PPL+ +       +     Y  DE  LE  L             D++
Sbjct: 533 PQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----VRDNQ 588

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             IS+      +      D  +           + +              +    A+   
Sbjct: 589 WSISRFKGLGEMSAEQLWDTTMNPDTRRLQPVALGKLDYDATV-ARMTMLMGKGEAASRR 647

Query: 640 NRLNFIAEKSE 650
           + L     + E
Sbjct: 648 SWLEEKGNEVE 658



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 9/92 (9%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRV---KIT-DASQ 772
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L  V   K+  DA+ 
Sbjct: 572 LEAILDKLRKDGVRDNQWSISRFKGLGEMSAEQLWDTTMNPDTRRLQPVALGKLDYDATV 631

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           A  + + LMG  E   RR +++E       DI
Sbjct: 632 A-RM-TMLMGKGEAASRRSWLEEKGNEVEADI 661


>gi|58761287|gb|AAW82358.1| DNA gyrase subunit B [Dehalococcoides sp. KB-1/PCE]
 gi|58761289|gb|AAW82359.1| DNA gyrase subunit B [Dehalococcoides sp. KB-1/VC]
          Length = 464

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 230/462 (49%), Positives = 315/462 (68%), Gaps = 6/462 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           T GE  LHH++YE++ N++DE++ G  D I V +  DGS +V DNGRGIP D+H    IS
Sbjct: 9   TSGE--LHHLVYEIVYNSVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHSTTKIS 66

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           A E +MT LHAG KF  K+Y+VSGGLHGVG SVVNALS W  ++++R G IY+ S++ G 
Sbjct: 67  ALETVMTVLHAGAKFGGKTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGK 126

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL   G     +GT   F+  S IFS  +++++TL  RLRE+++LN  +++ + D++
Sbjct: 127 PSTPLEEVG-VSEGSGTTTIFMADSQIFSTTEYDFETLTDRLREIAYLNKGLEVYIYDEK 185

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           S + R      +GGI  FV +L+R+++   + PI I    D+  +++A+++NDGY ++ L
Sbjct: 186 SDQERTYYF--EGGITGFVRHLNRNREVRHRQPIYITKKSDSTILEVAIQYNDGYSDSTL 243

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N +   DGGTHL+G RSALTR    Y  KS   K    +++GDD REG  +++S+K+
Sbjct: 244 TFANCVNTVDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKL 303

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+F  QTK KL + E++S VES V + LS +LEEHP + K I++K + A+  R+AAR+
Sbjct: 304 PEPQFEGQTKGKLGNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARK 363

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARDL  RK  LD  +LPGKLADCSERD    ELFLVEGDSAGGSAKQGR+R  QAILPLR
Sbjct: 364 ARDLIIRKSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLR 423

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GKILNVE+A  DKML+ +EI  +ITAL  GI  + FD  KLR
Sbjct: 424 GKILNVEKASPDKMLAHEEIRAIITALAAGI-DNDFDPAKLR 464


>gi|68138722|gb|AAY86006.1| GyrB [Burkholderia cenocepacia]
          Length = 612

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 266/616 (43%), Positives = 378/616 (61%), Gaps = 20/616 (3%)

Query: 145 IYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
              M F  G+              +P++VTG    + GTEV F+    IF   +++YD L
Sbjct: 1   KRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDIL 59

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             R+RELS LN+ V+I L D RS +       + GG++ FV Y+++ K  L  +     G
Sbjct: 60  AKRMRELSLLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANG 117

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK
Sbjct: 118 EKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKK 177

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P
Sbjct: 178 AKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETP 237

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           ++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEG
Sbjct: 238 IDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEG 297

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ +++
Sbjct: 298 DSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNL 357

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
           +KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y
Sbjct: 358 DKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERY 417

Query: 553 VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
           +KD+  L  +++  +L     +  ++   IS + L       L    +I      +D   
Sbjct: 418 LKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIDRLSRLYDPAA 477

Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIA 668
           +E AV+ GV    S++E   + A  L   L+  A K+E      +        + V+R  
Sbjct: 478 LE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTH 536

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            G     V++     +   +     +N  +        +      + +    S +  + +
Sbjct: 537 HGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLA 596

Query: 729 IGRKGISMQRYKGLGE 744
              + +S QRYKGLGE
Sbjct: 597 DAERNVSKQRYKGLGE 612


>gi|194339083|gb|ACF49457.1| GyrB [Amycolatopsis lurida]
          Length = 460

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 207/460 (45%), Positives = 295/460 (64%), Gaps = 15/460 (3%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           H++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T 
Sbjct: 1   HLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEMKPTLEVVLTV 60

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   +KR G+ +   + + I    L   
Sbjct: 61  LHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQVYTDQIP-GELEDL 119

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI- 221
           G A  DTGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  +     
Sbjct: 120 GPAE-DTGTTITFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEA 178

Query: 222 ------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
                       T  Y GG+E FV +++  K P+  S I  +     + +++AM+WN+G+
Sbjct: 179 DASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTGLEVEVAMQWNNGF 238

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
             +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  ++
Sbjct: 239 TPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLSGDDVREGLAAI 298

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  R
Sbjct: 299 VSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQAR 358

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AAR+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    QA
Sbjct: 359 MAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMYQA 418

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           ILP+RGKI+NVE+AR D++L + E+ +LITALGTGI ++ 
Sbjct: 419 ILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHEEF 458


>gi|315093331|gb|EFT65307.1| DNA gyrase, B subunit [Propionibacterium acnes HL060PA1]
          Length = 719

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 232/678 (34%), Positives = 344/678 (50%), Gaps = 59/678 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY   ITV
Sbjct: 28  SREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIFDNGVDEALAGYGRRITV 86

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGLHGVG S
Sbjct: 87  TLEKAGSILVTDEGRGIPVDVEPRTGLSGLEVVYTKLHAGGKFGGGAYNVSGGLHGVGAS 146

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTGSAGN-DTGT 171
           VVNA+S  L + + R+  ++ MSF  G+         D P      +   G A    TGT
Sbjct: 147 VVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAKRGVTGT 206

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------EPRE 220
            V + P   IF      ++  L  R R+ +FL   ++I + D+R            E   
Sbjct: 207 RVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGDVLETVS 266

Query: 221 ITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS---------IDL 261
            TM + GGI  F  Y          +    +      + +      ++         +D+
Sbjct: 267 ETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDRDLGVDI 326

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A+RW  GY   V  F N I    GGTH+ G    L R  ++ +E +   K  +  V  DD
Sbjct: 327 ALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEEIVK-DD 385

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----I 377
             EG T+V+++ + +P+F  QTKE L +  VR +V   V D ++A+L       K     
Sbjct: 386 VLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADKPVARA 445

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +++KV++AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VEGDSA G
Sbjct: 446 LMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEGDSALG 505

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           +A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD++++RY
Sbjct: 506 TANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKT-FDLDQVRY 564

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYV 553
            K+I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       +    +Y+
Sbjct: 565 GKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGMDKYL 624

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 +       L+++   F + +      ++         +D   +        T  
Sbjct: 625 YTYTDADYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI---TVD 681

Query: 614 EQAVISGVFNCESDQEIN 631
           + A   G F      E+ 
Sbjct: 682 DAAEAEGTFEILMGNEVA 699



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 728 SIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +KG+     QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+E
Sbjct: 638 QLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEILMGNE 697

Query: 785 VEPRREFIQENS--LPSA-LD 802
           V PR++FI E +  L +  +D
Sbjct: 698 VAPRKQFIVEGAYRLDAEQID 718


>gi|194339089|gb|ACF49460.1| GyrB [Amycolatopsis minnesotensis]
          Length = 461

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 208/462 (45%), Positives = 291/462 (62%), Gaps = 15/462 (3%)

Query: 29  SMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH 88
            MYIG T GE GLHH+I+EV+DNA+DE++ GYA  + VTL  DG   V D+GRGIP D+H
Sbjct: 1   GMYIGST-GERGLHHLIWEVVDNAVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMH 59

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
             E     EV++T+LHAGGKF+ +SY VSGGLHGVGVSVVNALS+ L + I  +G I+  
Sbjct: 60  PVENKPTLEVVLTQLHAGGKFDGESYAVSGGLHGVGVSVVNALSTRLDVEIHLDGKIWTQ 119

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           ++       P+         TGT VTF     IF    +N +T+  RL+E++FLN  + I
Sbjct: 120 TYEMSEPVAPIAEQ-GTTTKTGTTVTFWADPTIFETTTYNAETVARRLQEMAFLNKGLSI 178

Query: 209 SLIDKRSPEPREIT-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           +L D+R  E                    Y GG+E FV +++  K P+  S I      D
Sbjct: 179 TLRDERVAEEETEEDAGGQQARVKERVYHYPGGLEDFVRHINGSKDPIHASVISFDAKGD 238

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
            + +++AM+WN+ +  +V  F N I   +GGTH  G R+ALTR +  Y +     K+   
Sbjct: 239 GLEVEVAMQWNNSFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNLYAKDKKLLKEKDD 298

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ G+D REG  +++SIK+ +P+F  QTK KL +SE ++ V+S  N+ L+ W E +P EA
Sbjct: 299 NLSGEDVREGLAAIVSIKLAEPQFEGQTKTKLGNSEAKTFVQSKTNEWLADWFERNPSEA 358

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K ++ K + ++  R AARRARDL RRKG LDI  LPGKL DC   +P++ EL++VEGDSA
Sbjct: 359 KTVINKAVSSAQARMAARRARDLVRRKGALDIGGLPGKLKDCRSTNPEECELYIVEGDSA 418

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           GGSAK+GR    QAILP+RGKI+NVE+AR D++L + E+ +L
Sbjct: 419 GGSAKEGRDSMFQAILPIRGKIINVEKARIDRVLKNTEVQSL 460


>gi|194339067|gb|ACF49449.1| GyrB [Amycolatopsis echigonensis]
          Length = 449

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 201/451 (44%), Positives = 284/451 (62%), Gaps = 15/451 (3%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
            GLHH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV
Sbjct: 1   RGLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEV 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           ++T LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   IK  G  +   ++N +   P
Sbjct: 61  VLTILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVNGRSWRQEYLNQVP-GP 119

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G A  DTGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  + 
Sbjct: 120 LEDLGPAT-DTGTTITFWADDSIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADE 178

Query: 219 REIT-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
                              Y GG+E FV +++  K P+ +S I        + +++AM+W
Sbjct: 179 ETEEDAAGKQARVKEVVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAGLEVEVAMQW 238

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N G+  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG
Sbjct: 239 NTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREG 298

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + +
Sbjct: 299 LAAIVSIKLAEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPSEAKTIINKSISS 358

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR  
Sbjct: 359 AQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDS 418

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGT 476
             QAILP+RGKI+NVE+AR D++L + E+ +
Sbjct: 419 MYQAILPIRGKIINVEKARIDRVLKNTEVQS 449


>gi|314923406|gb|EFS87237.1| DNA gyrase, B subunit [Propionibacterium acnes HL001PA1]
 gi|314966753|gb|EFT10852.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA2]
 gi|314981087|gb|EFT25181.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA3]
 gi|315091912|gb|EFT63888.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA4]
 gi|315103413|gb|EFT75389.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA2]
 gi|327327578|gb|EGE69354.1| DNA gyrase, B subunit [Propionibacterium acnes HL103PA1]
          Length = 719

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 232/678 (34%), Positives = 343/678 (50%), Gaps = 59/678 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY   ITV
Sbjct: 28  SREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIFDNGVDEALAGYGRRITV 86

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGLHGVG S
Sbjct: 87  TLEKAGSILVTDEGRGIPVDVEPRTGLSGLEVVYTKLHAGGKFGGGAYNVSGGLHGVGAS 146

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTGSAGN-DTGT 171
           VVNA+S  L + + R+  ++ MSF  G+         D P      +   G A    TGT
Sbjct: 147 VVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAKRGVTGT 206

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------EPRE 220
            V + P   IF      ++  L  R R+ +FL   ++I + D+R            E   
Sbjct: 207 RVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGDVLETVS 266

Query: 221 ITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS---------IDL 261
            TM + GGI  F  Y          +    +      + +      ++         +D+
Sbjct: 267 ETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDRDLGVDI 326

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A+RW  GY   V  F N I    GGTH+ G    L R  ++ +E +   K  +  V  DD
Sbjct: 327 ALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEEIVK-DD 385

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----I 377
             EG T+V+++ + +P+F  QTKE L +  VR +V   V D ++A+L       K     
Sbjct: 386 VLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADKPVARA 445

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +++KV++AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VEGDSA G
Sbjct: 446 LMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEGDSALG 505

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           +A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD+++ RY
Sbjct: 506 TANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKT-FDLDQARY 564

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYV 553
            K+I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       +    +Y+
Sbjct: 565 GKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGMDKYL 624

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 +       L+++   F + +      ++         +D   +        T  
Sbjct: 625 YTYTDADYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI---TVD 681

Query: 614 EQAVISGVFNCESDQEIN 631
           + A   G F      E+ 
Sbjct: 682 DAAEAEGTFEILMGNEVA 699



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 728 SIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +KG+     QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+E
Sbjct: 638 QLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEILMGNE 697

Query: 785 VEPRREFIQENS--LPSA-LD 802
           V PR++FI E +  L +  +D
Sbjct: 698 VAPRKQFIVEGAYRLDAEQID 718


>gi|209516133|ref|ZP_03264992.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. H160]
 gi|209503417|gb|EEA03414.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. H160]
          Length = 661

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 224/671 (33%), Positives = 329/671 (49%), Gaps = 34/671 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH +EG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHADHSVSVEDDGRGIPFGLHPDEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + R+G + ++SF +G +  PL V  +A     +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVADLSFAHGDVKKPLEVRAAAKGEKKSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
                 F   +     LQ  LR  + L   V+++L+++++ E +         G      
Sbjct: 177 WADPKYFDSPNLPLGELQRLLRSKAVLLPGVEVTLVNEKTGEQQSWKYEDGLRGYLLEGM 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                  PL +     + SR +             + W++        + N IP   GGT
Sbjct: 237 NGSDLLIPLFEGERYAESSRSSEETFAEGEGAAWVVAWSEEGPLMRESYVNLIPTPAGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 297 HESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V SF    L  WL +H    K +   V+  +  R  A +      ++    +
Sbjct: 356 NSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQK---VEKRKSSGV 412

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC   +  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 413 AVLPGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWETERDR 472

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ E+  +  A+G         I+   LRY KI I++DADVDG+HI+ LLLT FF+  
Sbjct: 473 LFANNEVHDISVAIGVDPHNPDDKIDLSNLRYGKICILSDADVDGSHIQVLLLTLFFKHF 532

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           P LI  G + + +PPL+ +       +     Y  DE  LE  L             D++
Sbjct: 533 PQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----VRDNQ 588

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             IS+      +      D  +           +                +    A+   
Sbjct: 589 WSISRFKGLGEMSAEQLWDTTMNPDTRRLQPVALGDLDYDATV-ARMTMLMGKGEAASRR 647

Query: 640 NRLNFIAEKSE 650
           + L     + E
Sbjct: 648 SWLEEKGNEVE 658



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L  V + D       
Sbjct: 572 LEAILDKLRKDGVRDNQWSISRFKGLGEMSAEQLWDTTMNPDTRRLQPVALGDLDYDATV 631

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 632 ARMTMLMGKGEAASRRSWLEEKGNEVEADI 661


>gi|68138740|gb|AAY86008.1| GyrB [Burkholderia cenocepacia]
          Length = 612

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 266/616 (43%), Positives = 378/616 (61%), Gaps = 20/616 (3%)

Query: 144 NIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
               M F  G+              +P++VTG    + GTEV F+    IF   +++YD 
Sbjct: 1   KKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++ K  L  +     
Sbjct: 60  LAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFAN 117

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
           G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +K
Sbjct: 118 GEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAK 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E 
Sbjct: 178 KAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLET 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VE
Sbjct: 238 PIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ ++
Sbjct: 298 GDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYN 357

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           ++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +
Sbjct: 358 LDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDER 417

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           Y+KD+  L  +++  +L     +  ++   IS + L       L    +I      +D  
Sbjct: 418 YLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIDRLSRLYDPA 477

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRI 667
            +E AV+ GV    S++E   + A  L   L+  A K+E      +        + V+R 
Sbjct: 478 ALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERT 536

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G     V++     +   +     +N  +        +      + +    S +  + 
Sbjct: 537 HHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLL 596

Query: 728 SIGRKGISMQRYKGLG 743
           +   + +S QRYKGLG
Sbjct: 597 ADAERNVSKQRYKGLG 612


>gi|238020581|ref|ZP_04601007.1| hypothetical protein GCWU000324_00467 [Kingella oralis ATCC 51147]
 gi|237867561|gb|EEP68567.1| hypothetical protein GCWU000324_00467 [Kingella oralis ATCC 51147]
          Length = 662

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 217/671 (32%), Positives = 322/671 (47%), Gaps = 44/671 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS       Y   SI++LKGL+ VK+RP MY   TD  +   H+I EV+DNA DE+L GY
Sbjct: 1   MSQQPH---YTESSIKVLKGLEPVKERPGMYT-RTDSPT---HIIQEVIDNAADEALGGY 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ----KSYKV 116
           A  I+V ++ D S TV DNGRGIPT  H  E +   E++ T+LHAGGKFN+     +Y  
Sbjct: 54  ATRISVEIHSDQSITVRDNGRGIPTGNHPTEHLPVVELVFTQLHAGGKFNKTEGSGAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTF 175
           SGGLHGVGVSV NALS  L + +KR+G I  ++F  G +  PL   G+    DTGTEV  
Sbjct: 114 SGGLHGVGVSVTNALSKRLDVTVKRDGKIQHIAFAGGDVVEPLHPIGTCAQKDTGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEA 231
            P +  F    +N   L+  LR  + L   V++SL      +        T  Y  G+ +
Sbjct: 174 YPDTHYFEQPSYNLAELERLLRAKAVLLQGVEVSLTRPSKGQPENATTTQTWHYPQGLPS 233

Query: 232 FVSYLDRHKKPLMQSP-------IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           ++  L  + +  +                        A+ W +        + N IP   
Sbjct: 234 YLEDLLANAQEAVPIFASENYLAQSNDDFHAGEGAAFALTWLEEGTCANESYVNLIPTPL 293

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH +GL+ A+   + +++       +    +  DD       VLS ++ DP+F  QTK
Sbjct: 294 GGTHEAGLKQAMFNAVNNFINHHNLLPRG-VKLNSDDVFSRAAFVLSARILDPQFQGQTK 352

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KL + +   +V S  +D L  WL ++    K I +  +  +  R  + +      +K  
Sbjct: 353 DKLTNRDALKLVSSVCSDPLELWLNQNIEHGKKIAELAIKQAQARLRSTKK---IEKKKG 409

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN     
Sbjct: 410 SGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKNTQAILPLRGKVLNSFEIH 469

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
            D++  + EI  +  A+G      S   +   LRY KI I++DADVDG+HI+ LLLT F+
Sbjct: 470 RDQLFGNAEIHDISVAIGIDPHGASDQPDLSTLRYGKIAILSDADVDGSHIQVLLLTLFY 529

Query: 523 RQMPSLIHNGFLYIIKPPLYGI-------TRGKSLQYVKDEESLEDYLINQSLSEE---- 571
           +  P LI +G +Y+ +PPL+ +        +     Y  D+  L+  L            
Sbjct: 530 KHFPKLIEHGHIYVAQPPLFRVDINAQGKNKPARKLYALDQAELDSILERLHKENIKPSA 589

Query: 572 -IELFCDSKGVISKNDLRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
                    G ++ + L++     D    +   I D   +  +    + +  G       
Sbjct: 590 YSISRFKGLGEMNPDQLKDTTLHPDTRRLLQVTIPDLERHDTENIFIKLMGKGEAASRRA 649

Query: 628 QEINVSLASKL 638
                   ++L
Sbjct: 650 WMEREGDQAEL 660



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGD-EVEPRRE 790
            S+ R+KGLGEMN  QL +TTL+PDTR LL+V I D      +++F +LMG  E   RR 
Sbjct: 590 YSISRFKGLGEMNPDQLKDTTLHPDTRRLLQVTIPDLERHDTENIFIKLMGKGEAASRRA 649

Query: 791 FIQENSLPSALDI 803
           +++     + LDI
Sbjct: 650 WMEREGDQAELDI 662


>gi|237653590|ref|YP_002889904.1| DNA topoisomerase IV subunit B [Thauera sp. MZ1T]
 gi|237624837|gb|ACR01527.1| DNA topoisomerase (ATP-hydrolyzing) [Thauera sp. MZ1T]
          Length = 662

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 222/674 (32%), Positives = 322/674 (47%), Gaps = 37/674 (5%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+        YD  S ++LKGL+ V++RP MY   TD  +   H+I EV+DNA DE+L G
Sbjct: 1   MAGTQGTPKQYDESSFRVLKGLEPVRERPGMYT-RTDSPA---HIIQEVIDNAADEALGG 56

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN----QKSYK 115
           +A  I VTL++DGS TV+D+GRGIP  LH EEG+    +  TRLHAGGKF+      +Y 
Sbjct: 57  FAKKIHVTLHVDGSVTVADDGRGIPVGLHPEEGVPVVVLAYTRLHAGGKFDKREGNSAYA 116

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVT 174
            SGGLHGVGVSV NALS+ +++ ++REG I+ + F + G    P+ V G  G  TGT V 
Sbjct: 117 FSGGLHGVGVSVTNALSTRIEVEVRREGKIHRIDFSDGGETIGPVRVEGDCGRQTGTRVR 176

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-SPEPREITMFYKGGIEAFV 233
             P    F       + L+  LR  + L S V + L  ++ +      T  Y  G+  ++
Sbjct: 177 VWPDGKYFESPRVPMNELERLLRSKAVLLSGVAVRLDIEQANGPALTKTWSYPDGLAGYL 236

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG---------YHENVLCFTNNIPQKD 284
             L    +P+          +     D      +G                + N IP  +
Sbjct: 237 KELAGDVEPVAPI---FTAEKYAAKDDPTFAAGEGAAWALAWFESPVPSESYVNLIPTVN 293

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH SGLR+ +   + S++            +  +D     + VLS ++ DP+F  Q K
Sbjct: 294 GGTHESGLRAGVFEAMKSFI-DHHTLLPRGVKLQQEDVCGRMSFVLSARLLDPQFQGQVK 352

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           EKL S E   +V S + D    WL  H    + I +  +  ++ R  + +      +K  
Sbjct: 353 EKLNSREAVKLVSSQLRDPFEIWLNNHVEAGRAIAELSIKQALARQKSAQK---VEKKKT 409

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A LPGKL+DC   D   +ELFLVEGDSAGGSAK  R++E QAILPLRGK+ N     
Sbjct: 410 SGVAVLPGKLSDCESEDLADNELFLVEGDSAGGSAKMARNKETQAILPLRGKVQNAWEID 469

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
            D++ ++ EI  +  ALG         I+   LRY K++IM+DADVDGAHI+TLLLT FF
Sbjct: 470 PDRLFANAEIHDIAVALGVDAHTADSPIDLSGLRYGKVVIMSDADVDGAHIQTLLLTLFF 529

Query: 523 RQMPSLIHNGFLYIIKPPLYGIT-------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           R  P LI  G +Y+ +PPLY I        R     Y  DE  L                
Sbjct: 530 RHFPKLIERGHVYVAQPPLYRIDVPAQGKKRPPRRLYALDEGELAAMRERLEKEGFKPDA 589

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +        ++         +D   +   P   ++   Q  +  +F     +       
Sbjct: 590 IEIGRFKGLGEMNPDQLRETTMDPATRRVLPVKVRSGALQDTL-KMFTLLMGKGEASGRR 648

Query: 636 SKLANRLNFIAEKS 649
           + +  + + +    
Sbjct: 649 AWMEEKGDSVEADV 662



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD--DLFSR 779
           + +   G K   I + R+KGLGEMN  QL ETT++P TR +L VK+   +  D   +F+ 
Sbjct: 578 ERLEKEGFKPDAIEIGRFKGLGEMNPDQLRETTMDPATRRVLPVKVRSGALQDTLKMFTL 637

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++E       D+
Sbjct: 638 LMGKGEASGRRAWMEEKGDSVEADV 662


>gi|313818570|gb|EFS56284.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA2]
 gi|314959992|gb|EFT04094.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA2]
 gi|315085646|gb|EFT57622.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA3]
          Length = 719

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 233/678 (34%), Positives = 343/678 (50%), Gaps = 59/678 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY   ITV
Sbjct: 28  SREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIFDNGVDEALAGYGRRITV 86

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGLHGVG S
Sbjct: 87  TLEKAGSILVTDEGRGIPVDVEPRTGLSGLEVVYTKLHAGGKFGGGAYNVSGGLHGVGAS 146

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTGSAGN-DTGT 171
           VVNA+S  L + + R+  ++ MSF  G+         D P      +   G A    TGT
Sbjct: 147 VVNAVSVRLDVEVDRKSTVWGMSFRRGVPGDFEGEGPDAPFTPGSGVRKVGKAKRGVTGT 206

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------EPRE 220
            V + P   IF      ++  L  R R+ +FL   ++I + D+R            E   
Sbjct: 207 RVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGDVLETVS 266

Query: 221 ITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS---------IDL 261
            TM + GGI  F  Y          +    +      + +      ++         +D+
Sbjct: 267 ETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDRDLGVDI 326

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A+RW  GY   V  F N I    GGTH+ G    L R  ++ +E +   K  +  V  DD
Sbjct: 327 ALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEEIVK-DD 385

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----I 377
             EG T+V+++ + +P+F  QTKE L +  VR +V   V D ++A+L       K     
Sbjct: 386 VLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADKPVARA 445

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +++KV++AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VEGDSA G
Sbjct: 446 LMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEGDSALG 505

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           +A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD+++ RY
Sbjct: 506 TANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKT-FDLDQARY 564

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYV 553
            K+I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       +    +Y+
Sbjct: 565 GKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGMDKYL 624

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 E       L+++   F + +      ++         +D   +        T  
Sbjct: 625 YTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI---TVD 681

Query: 614 EQAVISGVFNCESDQEIN 631
           + A   G F      E+ 
Sbjct: 682 DAAEAEGTFEILMGNEVA 699



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 728 SIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +KG+     QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+E
Sbjct: 638 QLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEILMGNE 697

Query: 785 VEPRREFIQENS--LPSA-LD 802
           V PR++FI E +  L +  +D
Sbjct: 698 VAPRKQFIVEGAYRLDAEQID 718


>gi|313764445|gb|EFS35809.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA1]
 gi|313792132|gb|EFS40233.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA1]
 gi|313801916|gb|EFS43150.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA2]
 gi|313807528|gb|EFS46015.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA2]
 gi|313815984|gb|EFS53698.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA1]
 gi|313820337|gb|EFS58051.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA1]
 gi|313822857|gb|EFS60571.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA2]
 gi|313825212|gb|EFS62926.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA1]
 gi|313827500|gb|EFS65214.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA2]
 gi|313838742|gb|EFS76456.1| DNA gyrase, B subunit [Propionibacterium acnes HL086PA1]
 gi|314915439|gb|EFS79270.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA4]
 gi|314918280|gb|EFS82111.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA1]
 gi|314920092|gb|EFS83923.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA3]
 gi|314925225|gb|EFS89056.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA3]
 gi|314931614|gb|EFS95445.1| DNA gyrase, B subunit [Propionibacterium acnes HL067PA1]
 gi|314955667|gb|EFT00069.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA1]
 gi|314958181|gb|EFT02284.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA1]
 gi|314962791|gb|EFT06891.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA1]
 gi|314967842|gb|EFT11941.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA1]
 gi|314978414|gb|EFT22508.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA2]
 gi|314988116|gb|EFT32207.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA2]
 gi|314989921|gb|EFT34012.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA3]
 gi|315078006|gb|EFT50057.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA2]
 gi|315080631|gb|EFT52607.1| DNA gyrase, B subunit [Propionibacterium acnes HL078PA1]
 gi|315084303|gb|EFT56279.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA2]
 gi|315088932|gb|EFT60908.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA1]
 gi|315098545|gb|EFT70521.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA2]
 gi|315101098|gb|EFT73074.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA1]
 gi|315105643|gb|EFT77619.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA1]
 gi|315108318|gb|EFT80294.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA2]
 gi|327330265|gb|EGE72014.1| DNA gyrase, B subunit [Propionibacterium acnes HL097PA1]
 gi|327331929|gb|EGE73666.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA3]
 gi|327443131|gb|EGE89785.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA2]
 gi|327450773|gb|EGE97427.1| DNA gyrase, B subunit, carboxyl terminus [Propionibacterium acnes
           HL087PA3]
 gi|327453150|gb|EGE99804.1| DNA gyrase, B subunit, carboxyl terminus [Propionibacterium acnes
           HL092PA1]
 gi|327453883|gb|EGF00538.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA2]
 gi|328753461|gb|EGF67077.1| DNA gyrase, B subunit [Propionibacterium acnes HL020PA1]
 gi|328754191|gb|EGF67807.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA1]
 gi|328754557|gb|EGF68173.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA2]
          Length = 719

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 233/678 (34%), Positives = 343/678 (50%), Gaps = 59/678 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY   ITV
Sbjct: 28  SREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIFDNGVDEALAGYGRRITV 86

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGLHGVG S
Sbjct: 87  TLEKAGSILVTDEGRGIPVDVEPRTGLSGLEVVYTKLHAGGKFGGGAYNVSGGLHGVGAS 146

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTGSAGN-DTGT 171
           VVNA+S  L + + R+  ++ MSF  G+         D P      +   G A    TGT
Sbjct: 147 VVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAKRGVTGT 206

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------EPRE 220
            V + P   IF      ++  L  R R+ +FL   ++I + D+R            E   
Sbjct: 207 RVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGDVLETVS 266

Query: 221 ITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS---------IDL 261
            TM + GGI  F  Y          +    +      + +      ++         +D+
Sbjct: 267 ETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDRDLGVDI 326

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A+RW  GY   V  F N I    GGTH+ G    L R  ++ +E +   K  +  V  DD
Sbjct: 327 ALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEEIVK-DD 385

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----I 377
             EG T+V+++ + +P+F  QTKE L +  VR +V   V D ++A+L       K     
Sbjct: 386 VLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADKPVARA 445

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +++KV++AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VEGDSA G
Sbjct: 446 LMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEGDSALG 505

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           +A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD+++ RY
Sbjct: 506 TANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKT-FDLDQARY 564

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYV 553
            K+I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       +    +Y+
Sbjct: 565 GKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGMDKYL 624

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 E       L+++   F + +      ++         +D   +        T  
Sbjct: 625 YTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI---TVD 681

Query: 614 EQAVISGVFNCESDQEIN 631
           + A   G F      E+ 
Sbjct: 682 DAAEAEGTFEILMGNEVA 699



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 728 SIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +KG+     QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+E
Sbjct: 638 QLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEILMGNE 697

Query: 785 VEPRREFIQENS--LPSA-LD 802
           V PR++FI E +  L +  +D
Sbjct: 698 VAPRKQFIVEGAYRLDAEQID 718


>gi|227328542|ref|ZP_03832566.1| DNA gyrase subunit B [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 334

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 192/335 (57%), Positives = 252/335 (75%), Gaps = 3/335 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY   I +
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  LKL I R+G ++E ++ +G+   PL VTG   N TGT V F PS + F+   
Sbjct: 122 VVNALSEKLKLVIHRDGKLHEQTYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F Y+ L  RLRELSFLNS V I LID+R  + +     Y GGI+AFV YL+R+K P+  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDER-EKDKADHYHYDGGIKAFVDYLNRNKTPIHP 239

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++
Sbjct: 240 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMD 299

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           K   SKK K S  GDD REG  +V+S+K+PDP+FS
Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 334


>gi|194339065|gb|ACF49448.1| GyrB [Amycolatopsis decaplanina]
          Length = 456

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 204/458 (44%), Positives = 294/458 (64%), Gaps = 15/458 (3%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           ++ EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP D+H +E     EV++T L
Sbjct: 1   LVQEVVDNSVDEAMAGFATKVEVTLLADGGVRVVDDGRGIPVDMHPKEQKPTLEVVLTVL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SY VSGGLHGVGVSVVNALS+ L   +KR G+ +   + + +    L   G
Sbjct: 61  HAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQVYTDQVP-GELEDLG 119

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI-- 221
            A  DTGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  +      
Sbjct: 120 PAE-DTGTTITFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEAD 178

Query: 222 -----------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                      T  Y GG+E FV +++  K P+  S I  +     + +++AM+WN+G+ 
Sbjct: 179 ASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTGLEVEVAMQWNNGFT 238

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
            +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +++
Sbjct: 239 PSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLSGDDVREGLAAIV 298

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  R 
Sbjct: 299 SIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQARM 358

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    QAI
Sbjct: 359 AARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMYQAI 418

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LP+RGKI+NVE+AR D++L + E+ +LITALGTGI ++
Sbjct: 419 LPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHEE 456


>gi|68138710|gb|AAY86004.1| GyrB [Burkholderia cenocepacia]
          Length = 603

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 265/597 (44%), Positives = 378/597 (63%), Gaps = 8/597 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 11  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 69

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 70  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNE 127

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 128 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 187

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 188 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 247

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 248 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 307

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGA
Sbjct: 308 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGA 367

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 368 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 427

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I      +D   +E AV+ GV    S++E  
Sbjct: 428 ELVPGENAAAISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEEST 486

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 487 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 546

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           +     +N  +        +      + +    S +  + +   + +S QRYKGLGE
Sbjct: 547 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKGLGE 603


>gi|194339061|gb|ACF49446.1| GyrB [Amycolatopsis balhimycina]
          Length = 463

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 204/457 (44%), Positives = 290/457 (63%), Gaps = 15/457 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++ EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP D+H +E     EV++T
Sbjct: 1   HHLVQEVVDNSVDEAMAGHATKVEVTLLADGGVRVVDDGRGIPVDMHPKENKPTIEVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           +LHAGGKF+  SY VSGGLHGVG+SVVNALS+ L   +K  G  +   + + I   PL  
Sbjct: 61  QLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRLLAEVKYGGRSWRQLYTDQIP-GPLED 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A  +TGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +    
Sbjct: 120 LGPAT-ETGTTMTFWADDSIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETE 178

Query: 222 -------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                           Y GG+E FV +++  K P+  S I        + +++AM+WN+G
Sbjct: 179 ADAEGKVARVKEKVYCYPGGLEDFVKHINGSKDPIHPSVISFDAKGVGLEVEVAMQWNNG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG  +
Sbjct: 239 FTPSVYTFANTINTHEGGTHEEGFRAALTRVVNTYARDKKLLKEKDTNLTGDDVREGLAA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  
Sbjct: 299 IVSIKLGEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPTEAKTIINKSISSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRKG LDI  LPGKL DC    P++ EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           AILP+RGKI+NVE+AR D++L + E+ +LITALGTGI
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI 455


>gi|58761281|gb|AAW82355.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1]
          Length = 452

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 227/456 (49%), Positives = 312/456 (68%), Gaps = 4/456 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YE++ N++DE++ G  D I V +  DGS +V DNGRGIP D+H    ISA E +M
Sbjct: 1   LHHLVYEIVYNSVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHSTTKISALETVM 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAG KF  K+Y+VSGGLHGVG SVVNALS W  ++++R G IY+ S++ G    PL 
Sbjct: 61  TVLHAGAKFGGKTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
             G     +GT   F+  S IFS  +++++TL  RLRE+++LN  +++ + D++S + R 
Sbjct: 121 EVG-VSEGSGTTTIFMADSQIFSTTEYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERT 179

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                +GGI  FV +L+R+++   + PI I    D+  +++A+++NDGY ++ L F N +
Sbjct: 180 YYF--EGGITGFVRHLNRNREVRHRQPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCV 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTHL+G RSALTR    Y  KS   K    +++GDD REG  +++S+K+P+P+F 
Sbjct: 238 NTVDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL + E++S VES V + LS +LEEHP + K I++K + A+  R+AAR+ARDL  
Sbjct: 298 GQTKGKLGNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLII 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  LD  +LPGKLADCSERD    ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNV
Sbjct: 358 RKSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNV 417

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           E+A  DKML+ +EI  +ITAL  GI  + FD  KLR
Sbjct: 418 EKASPDKMLAHEEIRAIITALAAGI-DNDFDPAKLR 452


>gi|313772173|gb|EFS38139.1| DNA gyrase, B subunit [Propionibacterium acnes HL074PA1]
 gi|313810038|gb|EFS47759.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA1]
 gi|313830365|gb|EFS68079.1| DNA gyrase, B subunit [Propionibacterium acnes HL007PA1]
 gi|313833738|gb|EFS71452.1| DNA gyrase, B subunit [Propionibacterium acnes HL056PA1]
 gi|314973369|gb|EFT17465.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA1]
 gi|314976048|gb|EFT20143.1| DNA gyrase, B subunit [Propionibacterium acnes HL045PA1]
 gi|314983931|gb|EFT28023.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA1]
 gi|315095914|gb|EFT67890.1| DNA gyrase, B subunit [Propionibacterium acnes HL038PA1]
 gi|327326196|gb|EGE67986.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA2]
 gi|327445914|gb|EGE92568.1| DNA gyrase, B subunit, carboxyl terminus [Propionibacterium acnes
           HL043PA2]
 gi|327448106|gb|EGE94760.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA1]
 gi|328760843|gb|EGF74409.1| DNA gyrase, B subunit [Propionibacterium acnes HL099PA1]
          Length = 719

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 233/678 (34%), Positives = 343/678 (50%), Gaps = 59/678 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY   ITV
Sbjct: 28  SREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIFDNGVDEALAGYGRRITV 86

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGLHGVG S
Sbjct: 87  TLEKAGSILVTDEGRGIPVDVEPHTGLSGLEVVYTKLHAGGKFGGGAYNVSGGLHGVGAS 146

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTGSAGN-DTGT 171
           VVNA+S  L + + R+  ++ MSF  G+         D P      +   G A    TGT
Sbjct: 147 VVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAKRGVTGT 206

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------EPRE 220
            V + P   IF      ++  L  R R+ +FL   ++I + D+R            E   
Sbjct: 207 RVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGDVLETVS 266

Query: 221 ITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS---------IDL 261
            TM + GGI  F  Y          +    +      + +      ++         +D+
Sbjct: 267 ETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDRDLGVDI 326

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A+RW  GY   V  F N I    GGTH+ G    L R  ++ +E +   K  +  V  DD
Sbjct: 327 ALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEEIVK-DD 385

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----I 377
             EG T+V+++ + +P+F  QTKE L +  VR +V   V D ++A+L       K     
Sbjct: 386 VLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADKPVARA 445

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +++KV++AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VEGDSA G
Sbjct: 446 LMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEGDSALG 505

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           +A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD+++ RY
Sbjct: 506 TANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKT-FDLDQARY 564

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYV 553
            K+I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       +    +Y+
Sbjct: 565 GKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGMDKYL 624

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 E       L+++   F + +      ++         +D   +        T  
Sbjct: 625 YTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI---TVD 681

Query: 614 EQAVISGVFNCESDQEIN 631
           + A   G F      E+ 
Sbjct: 682 DAAEAEGTFEILMGNEVA 699



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 728 SIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +KG+     QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+E
Sbjct: 638 QLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEILMGNE 697

Query: 785 VEPRREFIQENS--LPSA-LD 802
           V PR++FI E +  L +  +D
Sbjct: 698 VAPRKQFIVEGAYRLDAEQID 718


>gi|307729036|ref|YP_003906260.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1003]
 gi|307583571|gb|ADN56969.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1003]
          Length = 661

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 228/671 (33%), Positives = 330/671 (49%), Gaps = 34/671 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHADHSVSVEDDGRGIPFGLHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + R+G +  +SF NG +  PL V  +A     +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAALSFANGDVAKPLEVRAAAKGEKKSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
             +   F   +     LQ  LR  + L   V+++LI++++ E +         G      
Sbjct: 177 WANPKYFDSPNLPLGELQRLLRSKAVLLPGVEVTLINEKTGEQQSWKYEDGLRGYLLEGM 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                  PL +     + SR N             + W++        + N IP   GGT
Sbjct: 237 NGSDLLIPLFEGERYAENSRANEETFAEGEGAAWVVAWSEEGPLTRESYVNLIPTPAGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 297 HESGLREGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V SF    L  WL +H    K +   V+  +  R  A +      ++    +
Sbjct: 356 NSRDAVKLVASFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQK---VEKRKSSGV 412

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC   +  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 413 AVLPGKLTDCESTEISRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWETERDR 472

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT FF+  
Sbjct: 473 LFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLTLFFKHF 532

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           P LI  G + + +PPL+ +       +     Y  DE  LE  L             D++
Sbjct: 533 PQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----VRDTQ 588

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             IS+      +      D  +           + +              +    A+   
Sbjct: 589 WSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDTTV-ARMTMLMGKGEAASRR 647

Query: 640 NRLNFIAEKSE 650
           + L     + E
Sbjct: 648 SWLEEKGNEVE 658



 Score = 90.8 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L  V +   D     
Sbjct: 572 LEAILDKLRKDGVRDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDTTV 631

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 632 ARMTMLMGKGEAASRRSWLEEKGNEVEADI 661


>gi|323525276|ref|YP_004227429.1| DNA topoisomerase [Burkholderia sp. CCGE1001]
 gi|323382278|gb|ADX54369.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1001]
          Length = 661

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 225/671 (33%), Positives = 329/671 (49%), Gaps = 34/671 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHADHSVSVEDDGRGIPFGLHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + R+G +  +SF +G +  PL V  +A     +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAALSFAHGDVAKPLEVRAAAKGDKKSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
                 F   +     LQ  LR  + L   V+++L+++++ E +         G      
Sbjct: 177 WADPKYFDSPNLPLGELQRLLRSKAVLLPGVEVTLVNEKTGEQQSWKYEDGLRGYLLEGM 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                  PL +     + SR +             + W++        + N IP   GGT
Sbjct: 237 NGSDLLIPLFEGERYAENSRASEETFAEGEGAAWVVAWSEEGPLTRESYVNLIPTPAGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 297 HESGLREGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V SF    L  WL +H    K +   V+  +  R  A +      ++    +
Sbjct: 356 NSRDAVKLVASFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQK---VEKRKSSGV 412

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 413 AVLPGKLTDCESTDIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWETERDR 472

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT FF+  
Sbjct: 473 LFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLTLFFKHF 532

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           P LI  G + + +PPL+ +       +     Y  DE  LE  L             +++
Sbjct: 533 PQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----VRETQ 588

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             IS+      +      D  +           + +              +    A+   
Sbjct: 589 WSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDTTV-ARMTMLMGKGEAASRR 647

Query: 640 NRLNFIAEKSE 650
           + L     + E
Sbjct: 648 SWLEEKGNEVE 658



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L  V +   D     
Sbjct: 572 LEAILDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDTTV 631

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 632 ARMTMLMGKGEAASRRSWLEEKGNEVEADI 661


>gi|187923202|ref|YP_001894844.1| DNA topoisomerase IV subunit B [Burkholderia phytofirmans PsJN]
 gi|187714396|gb|ACD15620.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia phytofirmans
           PsJN]
          Length = 661

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 228/671 (33%), Positives = 329/671 (49%), Gaps = 34/671 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHADHSVSVEDDGRGIPFGLHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + R+G I E+SF NG +   L V  +A     +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKIAELSFANGDVAKELEVRPAAKGDKKSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
             +   F   +     LQ  LR  + L   V+++LI++++ E +         G      
Sbjct: 177 WANPKYFDSPNLPLGELQRLLRSKAVLLPGVEVTLINEKTGEQQTWKYEDGLRGYLLEGM 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                  PL +     + SR +             + W++        + N IP   GGT
Sbjct: 237 NGSDLLIPLFEGERYAENSRASEETFAEGEGAAWVVAWSEEGTLMRESYVNLIPTPAGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 297 HESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V SF    L  WL +H    K +   V+  +  R  A +      ++    +
Sbjct: 356 NSRDAVKLVSSFARPALELWLNQHVELGKKLADLVIKQAQARTRAGQK---VEKRKSSGV 412

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC   +  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 413 AVLPGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWETERDR 472

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT FF+  
Sbjct: 473 LFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLTLFFKHF 532

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           P LI  G + + +PPL+ +       +     Y  DE  LE  L             D++
Sbjct: 533 PQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----VRDTQ 588

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             IS+      +      D  +           +                +    A+   
Sbjct: 589 WSISRFKGLGEMSAEQLWDTTMNPDTRRLSPVALGALDYDATV-ARMTMLMGKGEAASRR 647

Query: 640 NRLNFIAEKSE 650
           + L     + E
Sbjct: 648 SWLEEKGNEVE 658



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT----DASQ 772
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L  V +     DA+ 
Sbjct: 572 LEAILDKLRKDGVRDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLSPVALGALDYDATV 631

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           A  + + LMG  E   RR +++E       DI
Sbjct: 632 A-RM-TMLMGKGEAASRRSWLEEKGNEVEADI 661


>gi|313812934|gb|EFS50648.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA1]
          Length = 719

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 234/678 (34%), Positives = 344/678 (50%), Gaps = 59/678 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY   ITV
Sbjct: 28  SREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLIHCLWEIFDNGVDEALAGYGRRITV 86

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGLHGVG S
Sbjct: 87  TLEKAGSILVTDEGRGIPVDVEPRTGLSGLEVVYTKLHAGGKFGGGAYNVSGGLHGVGAS 146

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTGSAGND-TGT 171
           VVNA+S  L + + R+  ++ MSF  G+         D P      +   G A  D TGT
Sbjct: 147 VVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAKRDVTGT 206

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------EPRE 220
            V + P   IF      ++  L  R R+ +FL   ++I + D+R            E   
Sbjct: 207 RVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGDVLETVS 266

Query: 221 ITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS---------IDL 261
            TM + GGI  F  Y          +    +      + +      ++         +D+
Sbjct: 267 ETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDRDLGVDI 326

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A+RW  GY   V  F N I    GGTH+ G    L R  ++ +E +   K  +  V  DD
Sbjct: 327 ALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEEIVK-DD 385

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----I 377
             EG T+V+++ + +P+F  QTKE L +  VR +V   V D ++A+L       K     
Sbjct: 386 VLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADKPVARA 445

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +++KV++AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VEGDSA G
Sbjct: 446 LMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEGDSALG 505

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           +A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  FD+++ RY
Sbjct: 506 TANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKT-FDLDQARY 564

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYV 553
            K+I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       +    +Y+
Sbjct: 565 GKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGMDKYL 624

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 E       L+++   F + +      ++         +D   +        T  
Sbjct: 625 YTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI---TVD 681

Query: 614 EQAVISGVFNCESDQEIN 631
           + A   G F      E+ 
Sbjct: 682 DAAEAEGTFEILMGNEVA 699



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 6/81 (7%)

Query: 728 SIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
            + +KG+     QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+E
Sbjct: 638 QLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEILMGNE 697

Query: 785 VEPRREFIQENS--LPSA-LD 802
           V PR++FI E +  L +  +D
Sbjct: 698 VAPRKQFIVEGAYRLDAEQID 718


>gi|83719101|ref|YP_441494.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis E264]
 gi|167580262|ref|ZP_02373136.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis TXDOH]
 gi|167618385|ref|ZP_02387016.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis Bt4]
 gi|257139822|ref|ZP_05588084.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis E264]
 gi|83652926|gb|ABC36989.1| DNA topoisomerase IV, subunit B [Burkholderia thailandensis E264]
          Length = 660

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 225/675 (33%), Positives = 333/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EE +   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHPDQSVSVEDDGRGIPFGLHPEEKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I ++ F +G +  PL   G+      +GT VT 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQSWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      +K 
Sbjct: 351 KERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---IEKKK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDGAHI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +S+  IS+      +      D  +           + +              +    A
Sbjct: 584 RESQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGELDFEATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +   N L     + E
Sbjct: 643 AARRNWLEEKGNEVE 657



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    ++ R+KGLGEM+A QLW+TT+NPDTR L+ V +   D     
Sbjct: 571 LEAILDKLRKDGVRESQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGELDFEATV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRNWLEEKGNEVEADI 660


>gi|68138570|gb|AAY85986.1| GyrB [Burkholderia cepacia ATCC 25416]
          Length = 612

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 264/616 (42%), Positives = 377/616 (61%), Gaps = 20/616 (3%)

Query: 142 EGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           +G    M F  G+              +P++VTG    + GTEV F+    IF   +++Y
Sbjct: 1   DGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++ K  L  +   
Sbjct: 60  DILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFF 117

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
             G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  
Sbjct: 118 ANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEI 177

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L 
Sbjct: 178 AKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLL 237

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP K E+++
Sbjct: 238 ETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYI 297

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ 
Sbjct: 298 VEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKED 357

Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549
           ++++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY I  GK 
Sbjct: 358 YNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKD 417

Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
            +Y+KD+  L  +++  +L     +  ++   IS + L       L    +I+     +D
Sbjct: 418 ERYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIERLSRLYD 477

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINNSDILVK 665
              +E AV+ GV    S +    + A  L   L+  A K+E      +        + V+
Sbjct: 478 PAALE-AVMDGVVIDLSTEASTEASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVE 536

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           R   G     V++     +   +     +N  +        +      + +    S +  
Sbjct: 537 RTHHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKW 596

Query: 726 IFSIGRKGISMQRYKG 741
           + +   + +S QRYKG
Sbjct: 597 LLADAERNVSKQRYKG 612


>gi|213615568|ref|ZP_03371394.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 497

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 192/507 (37%), Positives = 285/507 (56%), Gaps = 12/507 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFNGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++   A+ + +  + ++       RA     RK +    +LPGKLADC+ +D  ++
Sbjct: 356 LWLNQNVQVAEQLAEMAIASAQ---RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN      D++L+SQE+  +  ++  GI
Sbjct: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGI 470

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAH 512
             DS D+++LRY KI I+ DAD DG H
Sbjct: 471 DPDSDDLSQLRYGKICILADADSDGLH 497


>gi|328907309|gb|EGG27075.1| DNA topoisomerase IV subunit B [Propionibacterium sp. P08]
          Length = 721

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 227/678 (33%), Positives = 340/678 (50%), Gaps = 59/678 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY   ITV
Sbjct: 30  SREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIFDNGVDEALAGYGRRITV 88

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGLHGVG S
Sbjct: 89  TLEKAGSILVTDEGRGIPVDVEPRTGLSGVEVVYTKLHAGGKFGGGAYNVSGGLHGVGAS 148

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVVTGSAGN-DTGT 171
           VVNA+S+ L + + R+  ++ MSF  G+               ++ +   G A    TGT
Sbjct: 149 VVNAVSARLDVEVDRKSTVWGMSFRRGVPGIFDGGGPDAPFTPESGVRKVGKAKRGATGT 208

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE---------- 220
            V + P   IF      ++  L  R R+ +FL   ++I + D R  +             
Sbjct: 209 RVRYWPDRQIFLPDAKLSWTKLADRARQTAFLVPGLEIVITDDRGIQTDPETGDVLGTVS 268

Query: 221 ITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS---------IDL 261
            TM + GGI  F  Y          +    +      + +      ++         +D+
Sbjct: 269 ETMRFDGGISEFAEYLATDEPVNDVMRLQGEASFTETVPMLDENGGMTPTDVDRDLGVDI 328

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A+RW  GY   V  F N I    GGTH+ G    L R   + +E +   K  +  V  DD
Sbjct: 329 ALRWGSGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFNAGLEGTRILKSSEEIVK-DD 387

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----I 377
             EG T+V+++ + +P+F  QTKE L +  VR +V   V + ++A+L       K     
Sbjct: 388 VLEGLTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEEKMTAFLTSAKAADKPVART 447

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +++KV+ AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VEGDSA G
Sbjct: 448 LMEKVVSASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEGDSALG 507

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           +A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  F +++ RY
Sbjct: 508 TANVARNSEHQALLPIRGKILNVQKADLGAMLKNVECASIIQVVGAGSGKT-FGLDQARY 566

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYV 553
            ++I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       +    +Y+
Sbjct: 567 GRVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGMDKYL 626

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 E       L+++   F + +      ++         +D   +        T  
Sbjct: 627 YTYTDAEYQRTAAQLTKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI---TVD 683

Query: 614 EQAVISGVFNCESDQEIN 631
           + A   G F      E+ 
Sbjct: 684 DAAEAEGTFEVLMGNEVA 701



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 51/69 (73%), Gaps = 3/69 (4%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+EV PR++FI E +
Sbjct: 652 QRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEVLMGNEVAPRKQFIVEGA 711

Query: 797 --LPSA-LD 802
             L +  +D
Sbjct: 712 YRLDAEQID 720


>gi|313837127|gb|EFS74841.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA2]
 gi|314927849|gb|EFS91680.1| DNA gyrase, B subunit [Propionibacterium acnes HL044PA1]
 gi|314971900|gb|EFT15998.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA3]
          Length = 719

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 227/678 (33%), Positives = 340/678 (50%), Gaps = 59/678 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  Y A ++ +L+GL+AV+KRP+MYIG TD   GL H ++E+ DN +DE+L GY   ITV
Sbjct: 28  SREYGAKNLLVLEGLEAVRKRPAMYIGSTD-TRGLMHCLWEIFDNGVDEALAGYGRRITV 86

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL   GS  V+D GRGIP D+    G+S  EV+ T+LHAGGKF   +Y VSGGLHGVG S
Sbjct: 87  TLEKAGSILVTDEGRGIPVDVEPRTGLSGVEVVYTKLHAGGKFGGGAYNVSGGLHGVGAS 146

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGI--------------LDNPLVVTGSAGN-DTGT 171
           VVNA+S+ L + + R+  ++ MSF  G+               ++ +   G A    TGT
Sbjct: 147 VVNAVSARLDVEVDRKSTVWGMSFRRGVPGIFDGGGPDAPFTPESGVRKVGKAKRGATGT 206

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE---------- 220
            V + P   IF      ++  L  R R+ +FL   ++I + D R  +             
Sbjct: 207 RVRYWPDRQIFLPDAKLSWTKLADRARQTAFLVPGLEIVITDDRGIQTDPETGDVLGTVS 266

Query: 221 ITMFYKGGIEAFVSY----------LDRHKKPLMQSPIRIQGSRDNIS---------IDL 261
            TM + GGI  F  Y          +    +      + +      ++         +D+
Sbjct: 267 ETMRFDGGISEFAEYLATDEPVNDVMRLQGEASFTETVPMLDENGGMTPTDVDRDLGVDI 326

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A+RW  GY   V  F N I    GGTH+ G    L R   + +E +   K  +  V  DD
Sbjct: 327 ALRWGSGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFNAGLEGTRILKSSEEIVK-DD 385

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----I 377
             EG T+V+++ + +P+F  QTKE L +  VR +V   V + ++A+L       K     
Sbjct: 386 VLEGLTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEEKMTAFLTSAKAADKPVART 445

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +++KV+ AS  R AAR  ++  RRK  L+ + LP KL DC   DP  +ELF+VEGDSA G
Sbjct: 446 LMEKVVSASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEGDSALG 505

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           +A   R+ E+QA+LP+RGKILNV++A    ML + E  ++I  +G G G+  F +++ RY
Sbjct: 506 TANVARNSEHQALLPIRGKILNVQKADLGAMLKNVECASIIQVVGAGSGKT-FGLDQARY 564

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYV 553
            ++I M DAD DGAHIR LL T FFR M  ++  G ++   PPL+       +    +Y+
Sbjct: 565 GRVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGMDKYL 624

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 E       L+++   F + +      ++         +D   +        T  
Sbjct: 625 YTYTDAEYQRTAAQLTKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI---TVD 681

Query: 614 EQAVISGVFNCESDQEIN 631
           + A   G F      E+ 
Sbjct: 682 DAAEAEGTFEVLMGNEVA 699



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 51/69 (73%), Gaps = 3/69 (4%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEM+ASQL ETT++P  R+L R+ + DA++A+  F  LMG+EV PR++FI E +
Sbjct: 650 QRYKGLGEMDASQLKETTMDPRHRTLRRITVDDAAEAEGTFEVLMGNEVAPRKQFIVEGA 709

Query: 797 --LPSA-LD 802
             L +  +D
Sbjct: 710 YRLDAEQID 718


>gi|302878548|ref|YP_003847112.1| DNA topoisomerase (ATP-hydrolyzing) [Gallionella capsiferriformans
           ES-2]
 gi|302581337|gb|ADL55348.1| DNA topoisomerase (ATP-hydrolyzing) [Gallionella capsiferriformans
           ES-2]
          Length = 653

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 212/637 (33%), Positives = 323/637 (50%), Gaps = 27/637 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD  S ++L+GL+ V++RP MY    D  +   H+I EV+DNA DE+L GY+  I V
Sbjct: 2   STTYDESSFKVLRGLEPVRQRPGMYT-TLDNPN---HIITEVVDNACDEALAGYSKNINV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS----YKVSGGLHG 122
             + DGS +V D GRGIP  +H EEG+S  EV  T LH+GGKF+++S    Y+ +GGLHG
Sbjct: 58  IAHSDGSVSVQDEGRGIPVGIHPEEGVSVVEVAFTVLHSGGKFDKESGGGAYRFAGGLHG 117

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDI 181
           VGV+V NALS+ +++ + R+G  + + F NG+  +PL    +     +GT V   P    
Sbjct: 118 VGVAVTNALSTAVEVTVFRDGGEHRLRFENGVATSPLAQVATCGKRKSGTTVRAWPDVKY 177

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM--FYKGGIEAFVSYLDRH 239
           F     N   L+  LR  + L   V I+L  +++ E +  +     +G +   ++ ++  
Sbjct: 178 FDSPLVNLAQLERALRAKAVLLPGVTITLTIEKTRESKSWSYPDGLRGYLMEALADVELA 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE---NVLCFTNNIPQKDGGTHLSGLRSAL 296
                      +G    +  + A        E       + N IP   GGTH +G+R  +
Sbjct: 238 APIFTGERYIAKGDEAFVEGEGAAWAFAWAEEGTITRESYVNLIPTWSGGTHDAGMRDGI 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
              + S+++           +  DD     + +LS K+ DP F  QTKEKLVS     +V
Sbjct: 298 FNAVKSFIDLHGMLP-KGVKLASDDVFCRVSFILSAKLLDPSFQGQTKEKLVSRNALKLV 356

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
            + V+D L  WL EH    K I +  +  +  R  + +      +K    +A LPGKL D
Sbjct: 357 STMVSDPLLLWLNEHTEYGKKIAEISIRQAQSRMKSTQK---IEKKKGSSVAVLPGKLTD 413

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
            +E +P ++ELFLVEGDSAGGSAKQGR++E QAILPLRGK+LN      D++ S+ E+  
Sbjct: 414 AAEYNPARNELFLVEGDSAGGSAKQGRNKEFQAILPLRGKVLNTFEVDRDRLFSNAEVHD 473

Query: 477 LITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           +  A+G      + + +   LRYH I IM DADVDG+HI TLLLT FFR  P LI  G +
Sbjct: 474 IAVAIGVDPHSMNDNADLSGLRYHSIYIMADADVDGSHIATLLLTLFFRHFPKLIAAGHI 533

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN---DLRNFI 591
           Y+ +PPL+ I      +    +   + Y +N      IE     + V + +        +
Sbjct: 534 YLAQPPLFRIDVPAQGK----KPLRKLYALNADELTSIEDRLSKEKVRAGSWSISRFKGL 589

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
            +   +        P+  +    Q   +   + E   
Sbjct: 590 GEMNPLQLWETTMCPDTRRALCVQLDAASFDSAEQTM 626



 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVE--PRRE 790
           S+ R+KGLGEMN  QLWETT+ PDTR  L V++  A    A+   + LM  + E   RRE
Sbjct: 582 SISRFKGLGEMNPLQLWETTMCPDTRRALCVQLDAASFDSAEQTMTMLMAKK-ESGSRRE 640

Query: 791 FIQENSLPSALDI 803
           +++ +      D+
Sbjct: 641 WLEYHGNEVTGDV 653


>gi|311337323|gb|ADP89911.1| DNA gyrase subunit B [Amycolatopsis sp. SE(8)3]
          Length = 463

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 211/466 (45%), Positives = 295/466 (63%), Gaps = 16/466 (3%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           ++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T L
Sbjct: 1   LVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEVVLTIL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SY VSGGLHGVGVSVVNALS+ L   IK  G  +   + N +   PL   G
Sbjct: 61  HAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTNQVP-GPLEDLG 119

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT- 222
            A  +TGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +      
Sbjct: 120 PAT-ETGTTITFWADDGIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEED 178

Query: 223 ------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                         Y GG+E FV +++  K P+ +S I        + +++AM+WN G+ 
Sbjct: 179 AAGKPARIKEKVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAGLEVEVAMQWNTGFT 238

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
            +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +++
Sbjct: 239 PSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAAIV 298

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SIK+ +P+F  QTK KL +SE ++ V+   N+ L  W E +P EAK I+ K + ++  R 
Sbjct: 299 SIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSAQARL 358

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR    QAI
Sbjct: 359 AARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQAI 418

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           LP+RGKI+NVE+AR D++L + E+ +LITALGTGI  D FD++KLR
Sbjct: 419 LPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI-HDDFDLSKLR 463


>gi|226939535|ref|YP_002794608.1| DNA topoisomerase IV subunit B [Laribacter hongkongensis HLHK9]
 gi|226714461|gb|ACO73599.1| ParE [Laribacter hongkongensis HLHK9]
          Length = 656

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 207/592 (34%), Positives = 315/592 (53%), Gaps = 25/592 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +  YD  ++++LKGL+ VK+RP MY   TD      H+  EV+DNA DE+L G+A  I V
Sbjct: 2   SQIYDESAVRVLKGLEPVKERPGMYTRTTDPT----HICQEVIDNAADEALGGFARKIAV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLHGV 123
           T++ DGS +V D+GRGIP  LH  EG+   E++ TRLHAGGKF++    +Y  SGGLHGV
Sbjct: 58  TVHADGSLSVEDDGRGIPVGLHPAEGVPVVELVFTRLHAGGKFDKQAGGAYAFSGGLHGV 117

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIF 182
           GVSV NALS+ L++ ++R+G++++++F  G +  PL  TGS G  T GT V   P    F
Sbjct: 118 GVSVTNALSTRLEVEVRRDGSVWQIAFSGGDVVEPLTRTGSCGPRTSGTRVRVWPDPRYF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-SPEPREITMFYKGGIEAFVSYLDRHKK 241
               ++   L+  LR  + L   V ++L  ++        T  Y  G++++++ L +   
Sbjct: 178 ESPRYSLHELERLLRAKAVLLPGVAVTLTVEKADGSNDTRTWRYPDGLKSYLTELCQGDA 237

Query: 242 PLMQSP---IRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           PL              D          A  W +        + N IP   GGTH +GLR+
Sbjct: 238 PLAPPFAGENYAGAEHDTFAQGEGAAWAFAWFEEGCGGGESYVNLIPTASGGTHEAGLRT 297

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            +   + ++VE      +    ++ +D       VLS ++ DP+F  QTKEKL + +   
Sbjct: 298 GVFEAMKAFVEHHGLMPRG-VKLVAEDVWGRARYVLSARVLDPQFQGQTKEKLNNRDALK 356

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +V + V D    WL  H  + K I +  +  +  R  + +      +K    +A LPGKL
Sbjct: 357 LVAAMVRDPFENWLNTHVEDGKKIAELAIKQAQSRLRSVKK---IEKKKGSGVAVLPGKL 413

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DC   D +++ELFLVEGDSAGGSAK  R +E QAILPLRGK+LN      D++  + EI
Sbjct: 414 TDCESEDIERNELFLVEGDSAGGSAKLARDKETQAILPLRGKVLNSWETDRDQLFGNAEI 473

Query: 475 GTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
             +  A+G          +   LRY KI I++DADVDG+HI+ LLLT F+R  P+L+  G
Sbjct: 474 HDIAVAIGVDPHGAGDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFYRHFPALVAAG 533

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            + + +PPL+ +      +   +    + Y ++++  E I     ++ V   
Sbjct: 534 HVCVAQPPLFRVDVPGQGK---NRPPRKFYALDEAELEGIIDRLRAEKVREG 582



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 9/92 (9%)

Query: 719 PCSLLDTIFSI-GRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD- 775
              ++D + +   R+G  S+ R+KGLGEMN  QL +TT+NPDTR LL V++     ADD 
Sbjct: 567 LEGIIDRLRAEKVREGSWSVSRFKGLGEMNPEQLKDTTMNPDTRRLLPVRVR--EGADDL 624

Query: 776 ---LFSRLMGD-EVEPRREFIQENSLPSALDI 803
              +F  LMG  E   RR +++        DI
Sbjct: 625 TRRMFVMLMGKGEAASRRSWMESRGHEVEADI 656


>gi|28627817|gb|AAN75469.1| topoisomerase II subunit B [Streptomyces roseochromogenes subsp.
           oscitans]
          Length = 702

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 226/670 (33%), Positives = 327/670 (48%), Gaps = 50/670 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A  + +L+GL+AV+KRP MYIG      GL H ++E++DNA+DE+L G  D I V 
Sbjct: 17  SDYTARHLMVLEGLEAVRKRPGMYIGS-SDSRGLMHCLWEIIDNAVDEALAGACDYIEVI 75

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V+DNGRGIP D     G+S  E+  T+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 76  LHDDGSVEVTDNGRGIPVDTEPRTGLSGVEIAYTKLHAGGKFGGGSYAASGGLHGVGASV 135

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL---DNP------------LVVTGSAGNDTGTE 172
           VNALS+ L + + R G  + +SF  G       P               T    + TGT 
Sbjct: 136 VNALSARLDVEVDRHGRTHAISFRRGTPGTYTGPGPDAPFTPAQGLRQTTKIPKSRTGTR 195

Query: 173 VTFLPSSD-IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V +             + + L  R R+ +FL   + I + D+          E +  + G
Sbjct: 196 VRYWADRQSFLKDAKLSLENLHQRARQTAFLVPGLTIVVRDEFGLGEGGSKGEESFRFDG 255

Query: 228 GIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  +L                  +  + +      ++         +D+A+RW  G
Sbjct: 256 GISEFCEFLASDTPVCDILRFSGQGTFKETVPVLDEHGQMTPTEVTRELGVDVALRWGTG 315

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   V  F N I    GGTH++G   A+ + +   +      +  +  +  DD  EG T+
Sbjct: 316 YDTTVRSFVNIIATPKGGTHVAGFEQAVGKTLNEVLRAKKLLRVAEDDIAKDDALEGLTA 375

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL---EEHPLEAKIIVKKVLDA 385
           V+++++ +P+F  QTKE L +S  R +V + ++  L A+L   +    +   +V +   A
Sbjct: 376 VVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISKELKAFLTSTKRDAAQQARVVMEKAVA 435

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +     A R     +RK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+ 
Sbjct: 436 AARTRIAARQHKDAQRKSALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARNS 495

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LP+RGKILNV+R+    ML + E G +I  +G G G+  FDI+  RY KII+MTD
Sbjct: 496 EFQALLPIRGKILNVQRSSVSDMLKNAECGAIIQVIGAGSGRT-FDIDTARYRKIIMMTD 554

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLED 561
           ADVDG+HIRTLLLT F R M  ++  G ++   PPL+ I     R    +YV      E 
Sbjct: 555 ADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIELVQPRKGQERYVYTYSDREL 614

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                    +   + DS          +    A              + T +E A   GV
Sbjct: 615 RDKLMEFQSKGIRYKDSVQRYKGLGEMDADQLAETTMDPRHRTLRRINLTDLEAA--EGV 672

Query: 622 FNCESDQEIN 631
           F+     ++ 
Sbjct: 673 FDLLMGNDVA 682



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 12/177 (6%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           ++    +  I   S +++         ++      V    +               + + 
Sbjct: 522 AECGAIIQVIGAGSGRTFDIDTARYRKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAG 581

Query: 696 RIEENYLTILSLI----CNGDKIKIT--GPCSLLDTIFSIGRKGI----SMQRYKGLGEM 745
           R+      +  +       G +  +       L D +     KGI    S+QRYKGLGEM
Sbjct: 582 RVFAAVPPLHRIELVQPRKGQERYVYTYSDRELRDKLMEFQSKGIRYKDSVQRYKGLGEM 641

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           +A QL ETT++P  R+L R+ +TD   A+ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 642 DADQLAETTMDPRHRTLRRINLTDLEAAEGVFDLLMGNDVAPRKEFITSSA--ATLD 696


>gi|91782490|ref|YP_557696.1| DNA topoisomerase IV subunit B [Burkholderia xenovorans LB400]
 gi|91686444|gb|ABE29644.1| DNA topoisomerase IV subunit B [Burkholderia xenovorans LB400]
          Length = 661

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 226/671 (33%), Positives = 331/671 (49%), Gaps = 34/671 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL++D S +V D+GRGIP  LH EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHVDHSVSVEDDGRGIPFGLHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + REG + E+SF NG +   L V  +      +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWREGKVAELSFANGDVARELEVRPATKGDKKSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
             +   F   +     LQ  LR  + L   V+++LI++++ E +         G      
Sbjct: 177 WANPKYFDSPNLPLGELQRLLRSKAVLLPGVEVTLINEKTGEQQSWKYEDGLRGYLLEGM 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                  PL +    ++ SR +             + W++        + N IP   GGT
Sbjct: 237 NGSDLLIPLFEGERYVENSRASEETFAEGEGASWVVAWSEEGTLMRESYVNLIPTPAGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 297 HESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V SF    L  WL +H    K +   V+  +  R  A +      ++    +
Sbjct: 356 NSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQK---VEKRKSSGV 412

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC   +  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 413 AVLPGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWETERDR 472

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT FF+  
Sbjct: 473 LFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLTLFFKHF 532

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           P LI  G + + +PPL+ +       +     Y  DE  LE  L             D++
Sbjct: 533 PQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----VRDTQ 588

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             IS+      +      D  +           + +              +    A+   
Sbjct: 589 WSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATV-ARMTMLMGKGEAASRR 647

Query: 640 NRLNFIAEKSE 650
           + L     + E
Sbjct: 648 SWLEEKGNEVE 658



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 9/92 (9%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRV---KIT-DASQ 772
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L  V   ++  DA+ 
Sbjct: 572 LEAILDKLRKDGVRDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATV 631

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           A  + + LMG  E   RR +++E       DI
Sbjct: 632 A-RM-TMLMGKGEAASRRSWLEEKGNEVEADI 661


>gi|107023297|ref|YP_621624.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia AU 1054]
 gi|116690380|ref|YP_836003.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia HI2424]
 gi|170733717|ref|YP_001765664.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia MC0-3]
 gi|254247559|ref|ZP_04940880.1| DNA topoisomerase [Burkholderia cenocepacia PC184]
 gi|105893486|gb|ABF76651.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia AU 1054]
 gi|116648469|gb|ABK09110.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia HI2424]
 gi|124872335|gb|EAY64051.1| DNA topoisomerase [Burkholderia cenocepacia PC184]
 gi|169816959|gb|ACA91542.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia cenocepacia
           MC0-3]
          Length = 660

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 223/675 (33%), Positives = 332/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADQSVSVEDDGRGIPFGMHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F +G +  PL   G+      +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQGAGRGEKKSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQTWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSTDETFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDDTVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +Y+ +PPL+ +       +     Y  D+  LE  L            
Sbjct: 528 FKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            D++  IS+      +      D  +           + +              +    A
Sbjct: 584 RDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D     
Sbjct: 571 LEAILDKLRKDGVRDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|194339075|gb|ACF49453.1| GyrB [Amycolatopsis japonica]
          Length = 450

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 200/451 (44%), Positives = 286/451 (63%), Gaps = 15/451 (3%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV+
Sbjct: 1   GLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEMKPTLEVV 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   +K  G  +   + + I    L
Sbjct: 61  LTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLVAEVKYGGRSWRQEYTDQIP-GEL 119

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
              G A  +TGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  +  
Sbjct: 120 QDLGPAT-ETGTTITFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEE 178

Query: 220 EI-------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                          T  Y GG+E FV +++  K P+  S I  +     + +++AM+WN
Sbjct: 179 TETDASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTGLEVEVAMQWN 238

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           +G+  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG 
Sbjct: 239 NGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLSGDDVREGL 298

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++
Sbjct: 299 AAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSA 358

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AAR+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR   
Sbjct: 359 QARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSM 418

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            QAILP+RGKI+NVE+AR D++L + E+ +L
Sbjct: 419 YQAILPIRGKIINVEKARIDRVLKNTEVQSL 449


>gi|194339105|gb|ACF49468.1| GyrB [Amycolatopsis rubida]
          Length = 450

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 203/452 (44%), Positives = 284/452 (62%), Gaps = 15/452 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T
Sbjct: 1   HHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   IK  G  +   + N +   PL  
Sbjct: 61  ILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTNQVP-GPLED 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A  DTGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +    
Sbjct: 120 LGPAS-DTGTTITFWADGSIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETE 178

Query: 222 T-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                           Y GG+E FV +++  K P+ +S I        + +++AM+WN G
Sbjct: 179 EDAAGKQARVKEVVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGSGLEVEVAMQWNTG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +
Sbjct: 239 FTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE ++ V+   N+ L  W E +P EAK I+ K + ++  
Sbjct: 299 IVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           AILP+RGKI+NVE+AR D++L + E+ +LITA
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNTEVQSLITA 450


>gi|194339085|gb|ACF49458.1| GyrB [Amycolatopsis mediterranei]
          Length = 447

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 199/449 (44%), Positives = 283/449 (63%), Gaps = 15/449 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++ EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP D+H +E     EV++T
Sbjct: 1   HHLVQEVVDNSVDEAMAGHATKVEVTLLADGGVRVVDDGRGIPVDMHPKEQKPTLEVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SY VSGGLHGVGVSVVNALS  L   +K  G  +   + + I   PL  
Sbjct: 61  VLHAGGKFDSDSYAVSGGLHGVGVSVVNALSKKLLAEVKYGGRSWRQEYTDQIP-GPLED 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE- 220
            G A  +TGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  +    
Sbjct: 120 LGPAS-ETGTTITFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEEAE 178

Query: 221 ------------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                        T  Y GG+E FV +++  K P+  S I  +     + +++AM+WN+G
Sbjct: 179 ADAEGKVARVKEKTYCYPGGLEDFVKHINGSKDPIHSSVISFEAKGTGLEVEVAMQWNNG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG  +
Sbjct: 239 FTPSVYTFANTINTHEGGTHEEGFRAALTRVVNTYARDKKLLKEKDTNLTGDDVREGLAA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  
Sbjct: 299 IVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRKG LDI  LPGKL DC    P++ EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTL 477
           AILP+RGKI+NVE+AR D++L + E+ +L
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNTEVQSL 447


>gi|152980258|ref|YP_001352397.1| DNA topoisomerase IV subunit B [Janthinobacterium sp. Marseille]
 gi|151280335|gb|ABR88745.1| topoisomerase IV subunit B [Janthinobacterium sp. Marseille]
          Length = 661

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 226/686 (32%), Positives = 332/686 (48%), Gaps = 49/686 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    ++ Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MATKKSSADYSESSIRVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
              I VTLN DGS +V D+GRGIP  LH EE +   E++ TRLHAGGKF++ S   Y  S
Sbjct: 57  CKNIVVTLNTDGSVSVEDDGRGIPVGLHPEEKVPTVEIVFTRLHAGGKFDKGSGGAYAFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTF 175
           GGLHGVGVSV NALS+ L++ + RE  ++ ++F  G +  PL           +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLEITVWRENGVHSLAFAGGDVVEPLKSRPLTRDEKRSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
            P +  F         LQ  LR  + L   V+++L+  +S E +         G      
Sbjct: 177 WPDAKYFDSSVIPQAELQRLLRSKAVLLPGVKVTLVHAKSGETQTWQYDQGLRGYLTESL 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNI----------SIDLAMRWNDGYHENVLCFTNNIPQKD 284
               + + L+      +G +                  + W +        + N IP  +
Sbjct: 237 AQASNSETLIP---LFEGEQYAGADAEGFAEGEGAAWVVAWTEDGAVVRESYVNLIPTSN 293

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH SGLR  L   + S+VE           ++ +D     + VLS K+ DP+F  Q K
Sbjct: 294 GGTHESGLREGLFGAVKSFVEMH-SLLPKGVKLLPEDVFARVSFVLSAKVLDPQFQGQIK 352

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L S +   +V SF    L  WL +H    K + + V+  +  R  + +      +K  
Sbjct: 353 ERLNSRDAVRLVASFTRPSLELWLNQHVEYGKKLAELVIKQAQSRLRSAQK---VEKKKS 409

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN     
Sbjct: 410 SGVAVLPGKLTDCESTDISRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWETE 469

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
            D++ ++ EI  +  A+G      +  ++   LRY +I I++DADVDG+HI+ LLLT FF
Sbjct: 470 RDRLFANNEIHDIAVAIGVDPHGKNDTVDLSNLRYGRICILSDADVDGSHIQVLLLTLFF 529

Query: 523 RQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           +  P LI  G + I +PPLY +       +     Y  D+  LE                
Sbjct: 530 KHFPQLIDRGHICIARPPLYRVDAPARGKKPVQKIYALDDGELEAIEDKLRKDG----VK 585

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           ++   IS+      ++     +  +                +  V   E D + + +  +
Sbjct: 586 ENAWTISRFKGLGEMNAEQLWETTMNPDTRR----------LLPVSLGEFDLDFSEARFN 635

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDI 662
            L  +    A ++    HG+   +DI
Sbjct: 636 MLMGKGEAAARRTWIEEHGNEAEADI 661



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 723 LDTIFSIGRK-GI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
           L+ I    RK G+     ++ R+KGLGEMNA QLWETT+NPDTR LL V +   D   ++
Sbjct: 572 LEAIEDKLRKDGVKENAWTISRFKGLGEMNAEQLWETTMNPDTRRLLPVSLGEFDLDFSE 631

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
             F+ LMG  E   RR +I+E+   +  DI
Sbjct: 632 ARFNMLMGKGEAAARRTWIEEHGNEAEADI 661


>gi|257838314|gb|ACV71147.1| gyrase B [Enterorhabdus caecimuris]
          Length = 449

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 219/448 (48%), Positives = 302/448 (67%), Gaps = 8/448 (1%)

Query: 47  EVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           EV+DNA+DE+L GY D I V ++ D S +V+DNGRGIP D H +E I   EV++T LHAG
Sbjct: 1   EVVDNAVDEALAGYCDTIEVWIHPDNSISVNDNGRGIPVDKHPKEKIPTVEVVLTILHAG 60

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF  + YKVSGGLHGVGVSVVNALS+ ++++++R+G  YE+ F +G  +N L   G A 
Sbjct: 61  GKFGGEGYKVSGGLHGVGVSVVNALSTKVEVQVRRDGKTYEIDFDHGKTNNKLHEVGPAK 120

Query: 167 NDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREI 221
            +TGT VTF P   IF     ++YDTL  R RE+SFLN  ++I L D+R       PR  
Sbjct: 121 -NTGTMVTFWPDPAIFTETTTYDYDTLAARFREMSFLNKGLKIILHDERVTDADGNPRTE 179

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-VLCFTNNI 280
                GGI  FV +++  K+ L   PI  +    + ++++A++W+  Y  N V+ F NNI
Sbjct: 180 VFQALGGIVDFVKFINDGKETLN-KPIYFEAENADGTVEVALQWSSSYSTNSVMAFANNI 238

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH+ G + A+TR I  Y       K+   ++ G+D REG  +++S+K+ DP+F 
Sbjct: 239 NTHEGGTHMDGFKQAITRTINDYARAKGLLKEKDNNLSGEDAREGLAAIISVKLHDPQFE 298

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++E+R +V++ V  GL+ +LEE+P  AK I+ K   A   R+AAR+AR++TR
Sbjct: 299 GQTKTKLGNTEIRPLVQNAVTQGLAEYLEENPTPAKRIIGKATQALKAREAARKAREMTR 358

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK VLD  S+PGKLADC+ +D  +SE+F+VEGDSAGGSAKQ R R+ QAILPLRGKILNV
Sbjct: 359 RKNVLDSFSMPGKLADCASKDASQSEIFIVEGDSAGGSAKQARDRKFQAILPLRGKILNV 418

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQD 488
           ERA   + LSS+ I +LITA+GT IG+D
Sbjct: 419 ERAGLHRSLSSETISSLITAIGTNIGED 446


>gi|145589083|ref|YP_001155680.1| DNA topoisomerase IV subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047489|gb|ABP34116.1| DNA topoisomerase IV subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 662

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 206/619 (33%), Positives = 306/619 (49%), Gaps = 41/619 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   + S Y   SIQ+LKGL+ V++RP MY   T  ++ L H+I EVLDNA DE+L G+
Sbjct: 1   MATR-KTSEYSESSIQVLKGLEPVRQRPGMY---TRTDNPL-HIIQEVLDNASDEALGGF 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  +H  E +   E++ T+LHAGGKF +    +Y  S
Sbjct: 56  GKHITVTLHTDSSVSVEDDGRGIPVGIHPTEKLPVVEIVFTQLHAGGKFEKGTGGAYAFS 115

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEVTF 175
           GGLHGVGVSV NALS  L++ + REG +  ++F +G +   L    S+  D   GT V  
Sbjct: 116 GGLHGVGVSVTNALSKRLEVTVWREGQVSTLTFADGKVIEKLKTRASSKEDKSHGTRVRA 175

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P S  F         L   LR  + L   V+++LI ++S + +        G+  +++ 
Sbjct: 176 WPDSKYFDSAAIPMPELIRLLRSKAVLLPGVKVTLIQEKSGDSQTWQYAQ--GLRGYLNE 233

Query: 236 LDRHKKPLMQSPIRIQGSRDNI------------SIDLAMRWNDGYHENVLCFTNNIPQK 283
                    +     +G +                    + W +        + N IP  
Sbjct: 234 AIAQAGHGPEVIPPFEGEQYATGNGEDDSFAEGEGAAWVVSWTEDGAPVRESYVNLIPTP 293

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L   +  ++E     +     ++ +D     + +LS K+ DP+F  Q 
Sbjct: 294 AGGTHESGLREGLFNAVKGFIEMHA-LQPKGVKLMPEDVFARASFILSAKVLDPQFQGQI 352

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V  +    L  WL +H    + +   V+  +  R  A +      +K 
Sbjct: 353 KERLNSRDAVRLVSGYAKSALELWLNQHVDYGRKLADLVIKQAQARTRAGQK---VEKKK 409

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++E+FLVEGDSAGGSAK GR++E QAILPLRGK+LN   A
Sbjct: 410 SSGVAVLPGKLTDCESEDIAQNEIFLVEGDSAGGSAKMGRNKEYQAILPLRGKVLNTWEA 469

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G      +   +   LRY K+ I++DADVDGAHI+ LLLT F
Sbjct: 470 ERDRLFANNEVHDIAVAIGVDPHGLNDTPDLSNLRYGKVCILSDADVDGAHIQVLLLTLF 529

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----E 570
           ++  P LI  G +YI +PPL+ +       +     Y  D   L+               
Sbjct: 530 YKHFPKLIDLGHIYISRPPLFRVDAPARGKKPAQKIYALDASELQAIEDKLRKDGVKETA 589

Query: 571 EIELFCDSKGVISKNDLRN 589
                    G +S   L +
Sbjct: 590 WQISRFKGLGEMSAEQLWD 608



 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 724 DTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF---S 778
           D +   G K     + R+KGLGEM+A QLW+TTLNPDTR LL V +  A   D+ F    
Sbjct: 578 DKLRKDGVKETAWQISRFKGLGEMSAEQLWDTTLNPDTRRLLPVTLG-AWTEDETFKTMD 636

Query: 779 RLMGD-EVEPRREFIQENSLPSALDI 803
            LMG  E   RR++++E       DI
Sbjct: 637 MLMGKSESGARRDWLEERGNEVEADI 662


>gi|184201079|ref|YP_001855286.1| DNA topoisomerase IV subunit B [Kocuria rhizophila DC2201]
 gi|183581309|dbj|BAG29780.1| DNA gyrase subunit B [Kocuria rhizophila DC2201]
          Length = 702

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 232/645 (35%), Positives = 339/645 (52%), Gaps = 65/645 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S Y+A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L GY
Sbjct: 1   MT--PSRSEYNARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNSVDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V L+ DGS  V D+GRGIP D     G++  EV+ T+LHAGGKF   SY  SGGL
Sbjct: 58  GQDIAVILHRDGSVEVHDDGRGIPIDTEPRTGLTGVEVVFTKLHAGGKFGGGSYSASGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLV 160
           HGVG SVVNALS+ L +++ R G  Y+MSF  G                      D+ L 
Sbjct: 118 HGVGASVVNALSARLDVQVDRGGKTYQMSFKRGEPGTFADKGAPSPSAPFEAFTTDSHLQ 177

Query: 161 VTGSAGN-DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---- 214
           V G A    TGT + +     IF     F+ + L  R R+ +FL   ++I++ D+R    
Sbjct: 178 VVGRAKRGVTGTRIRYWADDQIFTPDAKFSTEELVRRARQTAFLIPGLRITVTDERRLPG 237

Query: 215 ---SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------ 253
              +  P E    Y GGI  F  +        +    R+QG                   
Sbjct: 238 TAGADGPVEEVFQYDGGISEFAEF--LAPDAPVTDVWRLQGQGSFTERVPVLDGSGHAQL 295

Query: 254 ---RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS-FG 309
                   +D+A+RW  GY   V  F N I    GGTHLSG  +AL + +   V+ +   
Sbjct: 296 QDVERTCEVDVALRWGVGYDTAVRSFVNIIATPKGGTHLSGFENALLKTLRKQVDANTRK 355

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K     +  DD   G T+VL++++ +P+F  QTKE L +  VR +V   V   L+  L 
Sbjct: 356 LKAGNDKLEKDDVLAGLTAVLTVRLAEPQFEGQTKEVLGTPAVRQIVAKVVETELTKQLT 415

Query: 370 EHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
               + K     +++KV+     R +AR  ++  RRK  L+ +S+P KL +C   D  +S
Sbjct: 416 SKKRDDKAQAGQLLEKVVAEMKSRISARVHKETQRRKNALETSSMPTKLVECRSADVARS 475

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSA G+A+  R+  +QA+LP+RGKILNV++A    ML++ E   LI  +G G 
Sbjct: 476 ELFIVEGDSALGTARLARNSNHQALLPIRGKILNVQKASITDMLANAECAALIQVIGAGS 535

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+  FD++  RY K+I+MTDADVDGAHIRTLLLT F+R M  L+  G +Y   PPL+ + 
Sbjct: 536 GRS-FDLDAARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVYAAVPPLHRV- 593

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
               +     + +   Y  ++   + +    + +G   K  ++ +
Sbjct: 594 ---QIVNPGSKANEMVYTYSERELDTLLGSLEEQGRRYKEPIQRY 635



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 21/82 (25%)

Query: 722 LLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----------TDA 770
           LL ++   GR+    +QRYKGLGEM+A QL ETT++          I           DA
Sbjct: 617 LLGSLEEQGRRYKEPIQRYKGLGEMDADQLAETTMD----------IRHRVLRRVRVADA 666

Query: 771 SQADDLFSRLMGDEVEPRREFI 792
             A+  FS LMG +V PR++FI
Sbjct: 667 EAAERAFSLLMGSQVAPRKDFI 688


>gi|257068604|ref|YP_003154859.1| DNA topoisomerase IV subunit B [Brachybacterium faecium DSM 4810]
 gi|256559422|gb|ACU85269.1| DNA topoisomerase IV subunit B [Brachybacterium faecium DSM 4810]
          Length = 705

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 250/690 (36%), Positives = 351/690 (50%), Gaps = 64/690 (9%)

Query: 1   MSDNI--QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS     + S+YDA ++Q+L+GL+AV+KRP MY+G TD   GL H ++E+LDNA+DE+L 
Sbjct: 1   MSTTSTAKKSAYDARNLQVLEGLEAVRKRPGMYVGSTDS-RGLMHCLWEILDNAVDEALG 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY D I V L+ D S  V D GRG+P D+    G++  EV+ T+LHAGGKF   SY  SG
Sbjct: 60  GYGDSIEVILHPDHSVEVRDTGRGVPVDVEPRTGLTGVEVVYTKLHAGGKFGGGSYAASG 119

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------DNP-- 158
           GLHGVG SVVNALS  L + + R G IY MSF  G                      P  
Sbjct: 120 GLHGVGASVVNALSGRLDVEVDRGGKIYAMSFRRGQPGEFADADGPSPDSEFTPLTGPDA 179

Query: 159 LVVTGSAGN-DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           L V G A    TGT V +     IF     F+ D L  R R+ +FL   +++S+ D R  
Sbjct: 180 LRVVGKAKRGVTGTRVRYWADPQIFVKGSHFSLDDLTRRSRQTAFLVPGLKLSVTDHRPE 239

Query: 217 EPREIT----MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
              +        Y GGI  FV YL + +K      +R  G                    
Sbjct: 240 ASPDQPATRTFKYDGGISEFVEYLAQDQKITDVIRLRGTGEYTETIPVLDKNGHMVSTDV 299

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG---S 310
             +  +D+A+RW   +   V  F N +    GGTH++G   AL + +   VE        
Sbjct: 300 ERSCEVDIALRWGADFDATVRSFVNIVATPKGGTHVTGFEQALVKTVRKQVENHARRVKF 359

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
                 +  DD   G T+V+S+++ +P+F  QTKE L +  +R++V   V D L+ +L  
Sbjct: 360 NAKNEKIEKDDTLAGLTAVVSVRIDEPQFEGQTKEVLGTPAIRAIVAKVVEDRLTEFLTS 419

Query: 371 HPLEAKI----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
                K     ++ KV+     R AAR  ++++RRK  L+ +++P KLADC   D  +SE
Sbjct: 420 TTKGEKEQAALVIDKVVSEMRARIAARMHKEVSRRKNALESSTMPTKLADCRTHDVDRSE 479

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSA G+AK  RS E+QA+LP+RGKILN ++A    ML + E   +I  +G G G
Sbjct: 480 LFIVEGDSALGTAKNARSSEHQALLPIRGKILNTQKASVTDMLKNTECAAIIQVIGAGSG 539

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
           +  FD+   RY KII+MTDADVDGAHIRTLLLT F R M  L+  G +Y   PPL+ +  
Sbjct: 540 RT-FDLEAARYGKIIMMTDADVDGAHIRTLLLTLFHRYMRPLVEAGRVYAAVPPLHRVEI 598

Query: 547 ----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
                K  + V      E + + ++L    + +   K  I +      +D     D  + 
Sbjct: 599 IHGGKKKNELVYTYSEAELHKLLKNLERRGKRY---KEPIQRYKGLGEMDADQLADTTMD 655

Query: 603 DFYPNHDKTFIEQA-VISGVFNCESDQEIN 631
             +    +  IE A   S VF      E+ 
Sbjct: 656 PGHRTLRRVRIEDAEAASAVFELLMGSEVA 685



 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLL 763
               + +       L   + ++ R+G      +QRYKGLGEM+A QL +TT++P  R+L 
Sbjct: 603 KKKNELVYTYSEAELHKLLKNLERRGKRYKEPIQRYKGLGEMDADQLADTTMDPGHRTLR 662

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           RV+I DA  A  +F  LMG EV PR++FI E +
Sbjct: 663 RVRIEDAEAASAVFELLMGSEVAPRKQFIIEGA 695


>gi|296159125|ref|ZP_06841952.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. Ch1-1]
 gi|295890686|gb|EFG70477.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. Ch1-1]
          Length = 661

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 226/671 (33%), Positives = 330/671 (49%), Gaps = 34/671 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHADHSVSVEDDGRGIPFGLHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + REG + E+SF NG +   L V  +      +GT VT 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWREGKVAELSFANGDVARELEVRPATKGDKKSGTRVTA 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
             +   F   +     LQ  LR  + L   V+++LI++++ E +         G      
Sbjct: 177 WANPKYFDSPNLPLGELQRLLRSKAVLLPGVEVTLINEKTGERQSWKYEDGLRGYLLEGM 236

Query: 235 YLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                  PL +    ++ SR +             + W++        + N IP   GGT
Sbjct: 237 NGSDLLIPLFEGERYVENSRASEETFAEGEGASWVVAWSEEGTLMRESYVNLIPTPAGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 297 HESGLRDGLFQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERL 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V SF    L  WL +H    K +   V+  +  R  A +      ++    +
Sbjct: 356 NSRDAVKLVSSFARPALELWLNQHVELGKKLADLVIKQAQARTRAGQK---VEKRKSSGV 412

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC   +  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 413 AVLPGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWETERDR 472

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT FF+  
Sbjct: 473 LFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLTLFFKHF 532

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           P LI  G + + +PPL+ +       +     Y  DE  LE  L             D++
Sbjct: 533 PQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----VRDTQ 588

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             IS+      +      D  +           + +              +    A+   
Sbjct: 589 WSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATV-ARMTMLMGKGEAASRR 647

Query: 640 NRLNFIAEKSE 650
           + L     + E
Sbjct: 648 SWLEEKGNEVE 658



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 9/92 (9%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRV---KIT-DASQ 772
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L  V   ++  DA+ 
Sbjct: 572 LEAILDKLRKDGVRDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATV 631

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           A  + + LMG  E   RR +++E       DI
Sbjct: 632 A-RM-TMLMGKGEAASRRSWLEEKGNEVEADI 661


>gi|167835907|ref|ZP_02462790.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis MSMB43]
          Length = 660

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 224/675 (33%), Positives = 332/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EE +   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHPDQSVSVEDDGRGIPFGLHPEEKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I ++ F +G +  PL   G+      +GT VT 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +        G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQSWKY--DDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRTGDDTFAEGEGASWVVAWSEEGSLARESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      +K 
Sbjct: 351 KERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---IEKKK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDGAHI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  D+  LE  L            
Sbjct: 528 FKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +S+  IS+      +      D  +           + +              +    A
Sbjct: 584 RESQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGELDFEATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +   N L     + E
Sbjct: 643 AARRNWLEEKGNEVE 657



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    ++ R+KGLGEM+A QLW+TT+NPDTR L+ V +   D     
Sbjct: 571 LEAILDKLRKDGVRESQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGELDFEATV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRNWLEEKGNEVEADI 660


>gi|298252232|ref|ZP_06976035.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
 gi|297546824|gb|EFH80692.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
          Length = 687

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 214/652 (32%), Positives = 355/652 (54%), Gaps = 20/652 (3%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + ++Y A  IQ+L+G+ A++ RP MYIG T   SGL H+I+E LDNA+DE++ GY   I 
Sbjct: 42  KQAAYSAADIQVLEGISAIRHRPGMYIGSTS-TSGLVHLIWEALDNAVDEAVAGYGKQIW 100

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEG--ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           VT++ +G  TV D GRG+P D    +G  + AA VI+T  H+GGKF + +YK +GGLHGV
Sbjct: 101 VTIDREGWVTVRDEGRGLPFDPMLYQGDYLPAATVILTVPHSGGKFAEGAYKTAGGLHGV 160

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G +V+NALS  L+L I ++G  +   F  G    P  +        GT++ +     IF 
Sbjct: 161 GSTVINALSEKLELTIWKDGQCFSQLFSRGTAL-PHQIEPCDPKLHGTQLRWAYDRAIFD 219

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISL--IDKRSPEPREITMFYKGGIEAFVSYLDRH- 239
               ++ + +  RL+  ++LN  V I     D+   E      + + G+  +V  L    
Sbjct: 220 PDVYYSLEAIDSRLKAAAYLNRGVTIHFEAWDESLSEQVRRVYYSREGLPDYVRDLSSGA 279

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             P+ +  + I   +DN+S+++A++   GY   +  + N +  +DGG H SG ++ALT+ 
Sbjct: 280 NTPMFKHVLGIAKEKDNVSVEVALQPTTGYKTALYSYANAVRTRDGGVHESGFKAALTKV 339

Query: 300 ITSYVEKSFGSKKDKRS-VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
           I  Y  K    K  +R     +  ++G   V+S+K+ +P+F  QTK++L ++ V  +V S
Sbjct: 340 INDYAIKLSVIKNRERDGFKPEVIQQGLNVVISVKLTNPQFQGQTKDRLNNAPVEGIVRS 399

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA----ARRARDLTRRKGVLDIASLPGKL 414
            V++GL  W E++ +  K  +K++      R+        AR  T++   +   SL  K 
Sbjct: 400 IVDEGLKDWFEKNSVAGKEWLKRIQQMQKARNEAQLVEELARAGTKKNNEMIDTSLSKKF 459

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
             C+  D  ++ELF+VEGDSAGGSA QGR  E QAIL L+GK LNV +A    ++ ++EI
Sbjct: 460 LRCNTSDASRAELFIVEGDSAGGSAGQGRFSEFQAILKLKGKPLNVAKADLKSIVENEEI 519

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
            T+I  LGTG  +D FDI++L+++++II TDADVDG HI+ LLLT F ++   LI  G +
Sbjct: 520 RTIINVLGTGT-RDVFDISRLKFNRVIIATDADVDGLHIQCLLLTLFHQEFSDLIEQGHV 578

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK-GVISKNDLRNFIDD 593
           YI  PPLY +     + ++ ++E+ E ++   + ++ +E       G ++  +LR+    
Sbjct: 579 YIACPPLYSVKYKGKVHWLLNDEARERFVRTHADAQNLEFKRFKGLGEMNPKELRDT--- 635

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
               D   +       +  +  A +      + + E      ++ + ++  +
Sbjct: 636 --TFDPARRTLKRVTMEDGVLAAKLVTELMEDKNAERRRVFLAEHSRKIKEL 685



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQENS 796
           R+KGLGEMN  +L +TT +P  R+L RV + D   A  L + LM D+  E RR F+ E+S
Sbjct: 620 RFKGLGEMNPKELRDTTFDPARRTLKRVTMEDGVLAAKLVTELMEDKNAERRRVFLAEHS 679

Query: 797 LPS-ALDI 803
                LD+
Sbjct: 680 RKIKELDV 687


>gi|194339095|gb|ACF49463.1| GyrB [Amycolatopsis orientalis]
          Length = 463

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/466 (44%), Positives = 296/466 (63%), Gaps = 16/466 (3%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           ++ EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP D+H +E     EV++T L
Sbjct: 1   LVQEVVDNSVDEAMAGHATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEVVLTVL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SY VSGGLHGVGVSVVNALS+ L   +K  G  +   + + I    L   G
Sbjct: 61  HAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKYGGRSWRQVYTDQIP-GELEDLG 119

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI-- 221
            A  DTGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +      
Sbjct: 120 PAE-DTGTTITFWADGGIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEED 178

Query: 222 -----------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                      T  Y GG+E FV +++  K P+  S I  +     + +++AM+WN+G+ 
Sbjct: 179 ASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHSSVISFEAKGTGLEVEVAMQWNNGFT 238

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
            +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +++
Sbjct: 239 PSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAAIV 298

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P E+K I+ K + ++  R 
Sbjct: 299 SIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPAESKTIINKSISSAHARM 358

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    QAI
Sbjct: 359 AARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMYQAI 418

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           LP+RGKI+NVE+AR D++L + E+ +LITALGTGI  D FD+ KLR
Sbjct: 419 LPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI-HDEFDLEKLR 463


>gi|167718666|ref|ZP_02401902.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei DM98]
          Length = 660

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 225/675 (33%), Positives = 332/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EE +   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHPDQSVSVEDDGRGIPFGLHPEEKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I ++ F +G +  PL   G+      +GT VT 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGRIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +        G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQSWKY--DDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDATFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      +K 
Sbjct: 351 KERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKKK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDGAHI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +S+  IS+      +      D  +           + +              +    A
Sbjct: 584 RESQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGELDFEATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +   N L     + E
Sbjct: 643 AARRNWLEEKGNEVE 657



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    ++ R+KGLGEM+A QLW+TT+NPDTR L+ V +   D     
Sbjct: 571 LEAILDKLRKDGVRESQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGELDFEATV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRNWLEEKGNEVEADI 660


>gi|53718706|ref|YP_107692.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei K96243]
 gi|53726261|ref|YP_103773.1| DNA topoisomerase IV subunit B [Burkholderia mallei ATCC 23344]
 gi|76812112|ref|YP_332710.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 1710b]
 gi|121598410|ref|YP_992040.1| DNA topoisomerase IV subunit B [Burkholderia mallei SAVP1]
 gi|124384898|ref|YP_001028484.1| DNA topoisomerase IV subunit B [Burkholderia mallei NCTC 10229]
 gi|126440609|ref|YP_001058186.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 668]
 gi|126450291|ref|YP_001081617.1| DNA topoisomerase IV subunit B [Burkholderia mallei NCTC 10247]
 gi|126455235|ref|YP_001065424.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 1106a]
 gi|134281153|ref|ZP_01767862.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 305]
 gi|166998425|ref|ZP_02264285.1| DNA topoisomerase IV, B subunit [Burkholderia mallei PRL-20]
 gi|167737678|ref|ZP_02410452.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 14]
 gi|167821799|ref|ZP_02453479.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 91]
 gi|167823284|ref|ZP_02454755.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 9]
 gi|167844836|ref|ZP_02470344.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei B7210]
 gi|167901843|ref|ZP_02489048.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei NCTC
           13177]
 gi|167910066|ref|ZP_02497157.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 112]
 gi|167918094|ref|ZP_02505185.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei BCC215]
 gi|217420238|ref|ZP_03451744.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 576]
 gi|226194456|ref|ZP_03790054.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237811436|ref|YP_002895887.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei MSHR346]
 gi|238561081|ref|ZP_00442775.2| DNA topoisomerase IV, B subunit [Burkholderia mallei GB8 horse 4]
 gi|242316466|ref|ZP_04815482.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1106b]
 gi|254175499|ref|ZP_04882159.1| DNA topoisomerase IV, subunit B [Burkholderia mallei ATCC 10399]
 gi|254181318|ref|ZP_04887915.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1655]
 gi|254195128|ref|ZP_04901557.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei S13]
 gi|254202474|ref|ZP_04908837.1| DNA topoisomerase IV, subunit B [Burkholderia mallei FMH]
 gi|254207809|ref|ZP_04914159.1| DNA topoisomerase IV, subunit B [Burkholderia mallei JHU]
 gi|254259070|ref|ZP_04950124.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1710a]
 gi|254298402|ref|ZP_04965854.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 406e]
 gi|254356286|ref|ZP_04972562.1| DNA topoisomerase IV, subunit B [Burkholderia mallei 2002721280]
 gi|52209120|emb|CAH35064.1| topoisomerase IV subunit B [Burkholderia pseudomallei K96243]
 gi|52429684|gb|AAU50277.1| DNA topoisomerase IV, subunit B [Burkholderia mallei ATCC 23344]
 gi|76581565|gb|ABA51040.1| DNA topoisomerase IV, subunit B [Burkholderia pseudomallei 1710b]
 gi|121227220|gb|ABM49738.1| DNA topoisomerase IV, subunit B [Burkholderia mallei SAVP1]
 gi|124292918|gb|ABN02187.1| DNA topoisomerase IV, B subunit [Burkholderia mallei NCTC 10229]
 gi|126220102|gb|ABN83608.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 668]
 gi|126228877|gb|ABN92417.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1106a]
 gi|126243161|gb|ABO06254.1| DNA topoisomerase IV, B subunit [Burkholderia mallei NCTC 10247]
 gi|134247459|gb|EBA47544.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 305]
 gi|147746721|gb|EDK53798.1| DNA topoisomerase IV, subunit B [Burkholderia mallei FMH]
 gi|147751703|gb|EDK58770.1| DNA topoisomerase IV, subunit B [Burkholderia mallei JHU]
 gi|148025283|gb|EDK83437.1| DNA topoisomerase IV, subunit B [Burkholderia mallei 2002721280]
 gi|157808181|gb|EDO85351.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 406e]
 gi|160696543|gb|EDP86513.1| DNA topoisomerase IV, subunit B [Burkholderia mallei ATCC 10399]
 gi|169651876|gb|EDS84569.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei S13]
 gi|184211856|gb|EDU08899.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1655]
 gi|217397542|gb|EEC37558.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 576]
 gi|225933541|gb|EEH29530.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237504774|gb|ACQ97092.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei MSHR346]
 gi|238525514|gb|EEP88942.1| DNA topoisomerase IV, B subunit [Burkholderia mallei GB8 horse 4]
 gi|242139705|gb|EES26107.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1106b]
 gi|243065486|gb|EES47672.1| DNA topoisomerase IV, B subunit [Burkholderia mallei PRL-20]
 gi|254217759|gb|EET07143.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1710a]
          Length = 660

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 225/675 (33%), Positives = 332/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EE +   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHPDQSVSVEDDGRGIPFGLHPEEKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I ++ F +G +  PL   G+      +GT VT 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGRIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +        G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQSWKY--DDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      +K 
Sbjct: 351 KERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKKK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDGAHI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +S+  IS+      +      D  +           + +              +    A
Sbjct: 584 RESQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGELDFEATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +   N L     + E
Sbjct: 643 AARRNWLEEKGNEVE 657



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    ++ R+KGLGEM+A QLW+TT+NPDTR L+ V +   D     
Sbjct: 571 LEAILDKLRKDGVRESQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGELDFEATV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRNWLEEKGNEVEADI 660


>gi|58761291|gb|AAW82360.1| DNA gyrase subunit B [Dehalococcoides sp. Pinellas]
          Length = 451

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 226/455 (49%), Positives = 311/455 (68%), Gaps = 4/455 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YE++ N++DE++ G  D I V +  DGS +V DNGRGIP D+H    ISA E +MT
Sbjct: 1   HHLVYEIVYNSVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHSTTKISALETVMT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAG KF  K+Y+VSGGLHGVG SVVNALS W  ++++R G IY+ S++ G    PL  
Sbjct: 61  VLHAGAKFGGKTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEE 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G     +GT   F+  S IFS  +++++TL  RLRE+++LN  +++ + D++S + R  
Sbjct: 121 VG-VSEGSGTTTIFMADSQIFSTTEYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERTY 179

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
               +GGI  FV +L+R+++   + PI I    D+  +++A+++NDGY ++ L F N + 
Sbjct: 180 YF--EGGITGFVRHLNRNREVRHRQPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVN 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTHL+G RSALTR    Y  KS   K    +++GDD REG  +++S+K+P+P+F  
Sbjct: 238 TVDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL + E++S VES V + LS +LEEHP + K I++K + A+  R+AAR+ARDL  R
Sbjct: 298 QTKGKLGNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  LD  +LPGKLADCSERD    ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE
Sbjct: 358 KSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVE 417

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           +A  DKML+ +EI  +ITAL  GI  + FD  KLR
Sbjct: 418 KASPDKMLAHEEIRAIITALAAGI-DNDFDPAKLR 451


>gi|297162917|gb|ADI12629.1| DNA topoisomerase IV subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 703

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 223/683 (32%), Positives = 337/683 (49%), Gaps = 49/683 (7%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A  + +L+GL+AV+KRP MYIG      GL H ++E++DN++DE+L G  D I V 
Sbjct: 17  SDYTARHLMVLEGLEAVRKRPGMYIGS-SDSRGLMHCLWEIIDNSVDEALAGACDHIEVV 75

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L+ DGS  V+DNGRGIP D     G+S  E+  T+LHAGGKF   SY  SGGLHGVG SV
Sbjct: 76  LHDDGSVEVTDNGRGIPVDNEPRTGLSGVEIAYTKLHAGGKFGGGSYAASGGLHGVGASV 135

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL---DNP------------LVVTGSAGNDTGTE 172
           VNALS+ L + + R G  + +SF  G       P               T      TGT 
Sbjct: 136 VNALSARLDIEVDRHGRTHAISFRRGTPGTYTGPGPDAPFTPAQGLRQTTKVPKPRTGTR 195

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
           V +     IF      + + L  R R+ +FL   + I + D+          E +  + G
Sbjct: 196 VRYWADRQIFVKDAKLSLENLHQRARQTAFLVPGLTIVVRDEFGLGEGGSKGEESFRFDG 255

Query: 228 GIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS---------IDLAMRWNDG 268
           GI  F  +L   +              +  + +      ++         +D+A+RW  G
Sbjct: 256 GISEFCEFLASDRPVCDVLRFSGQGTFKETVPVLDEHGRMTPTEVTRELGVDVALRWGTG 315

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y   +  F N I    GGTH++G   A+ + +   +      +  +  ++ DD  EG T+
Sbjct: 316 YDTALRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRAKKLLRVAEDDIVKDDALEGLTA 375

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP----LEAKIIVKKVLD 384
           V+++++ +P+F  QTKE L +S  R +V + ++  L A+L         +A+++++K + 
Sbjct: 376 VVTVRLAEPQFEGQTKEVLGTSAARRIVNTLISKELKAFLTSTKRDAAQQARVVLEKAVA 435

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ +D  RRK  L+ +SLP KLADC   D  +SELF+VEGDSA G+AK  R+
Sbjct: 436 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLARN 495

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            E QA+LP+RGKILNV+++    ML + E G +I  +G G G+  FD++  RY KII+MT
Sbjct: 496 SEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT-FDLDAARYGKIIMMT 554

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI----TRGKSLQYVKDEESLE 560
           DADVDG+HIR LLLT   R M  ++  G ++   PPL+ +     +    +YV      E
Sbjct: 555 DADVDGSHIRILLLTLCHRYMRPMVEAGRVFAAVPPLHRVELIQPKKGQDKYVYTYSDRE 614

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +   + DS          +    A              + + +E A    
Sbjct: 615 LRDKLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINLSDLEAAERVF 674

Query: 621 VFNCESDQEINVSLASKLANRLN 643
                ++        +  A  L+
Sbjct: 675 DLLMGNEVAPRKEFIANSAATLD 697



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L D +     K I    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 604 DKYVYTYSDRELRDKLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 663

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           ++D   A+ +F  LMG+EV PR+EFI  ++  + LD
Sbjct: 664 LSDLEAAERVFDLLMGNEVAPRKEFIANSA--ATLD 697


>gi|172061321|ref|YP_001808973.1| DNA topoisomerase IV subunit B [Burkholderia ambifaria MC40-6]
 gi|171993838|gb|ACB64757.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria MC40-6]
          Length = 660

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 220/675 (32%), Positives = 331/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADQSVSVEDDGRGIPFGMHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F +G +  PL   G+      +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLTTQGAGRGEKRSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQTWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDN------------ISIDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R                    + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADARSTDETFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +++  IS+      +      D  +           + +              +    A
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYESTV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 723 LDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFS 778
           LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D        +
Sbjct: 575 LDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYESTVARMT 634

Query: 779 RLMGD-EVEPRREFIQENSLPSALDI 803
            LMG  E   RR +++E       DI
Sbjct: 635 MLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|194339119|gb|ACF49475.1| GyrB [Amycolatopsis vancoresmycina]
          Length = 447

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 282/449 (62%), Gaps = 15/449 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T
Sbjct: 1   HHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEQKPTLEVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SY VSGGLHGVGVSVVNALS  L   +K  G  +   + + I   PL  
Sbjct: 61  VLHAGGKFDSDSYAVSGGLHGVGVSVVNALSKKLLAEVKYGGRSWRQEYTDQIP-GPLED 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE- 220
            G A  +TGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  +    
Sbjct: 120 LGPAA-ETGTTITFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEEAE 178

Query: 221 ------------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                        T  Y GG+E FV +++  K P+  S I        + +++AM+WN G
Sbjct: 179 EDAEGKVARVKEKTYCYPGGLEDFVKHINGSKDPIHPSVISFDAKGTGLEVEVAMQWNTG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + SY       K+   ++ GDD REG  +
Sbjct: 239 FTPSVYTFANTINTHEGGTHEEGFRAALTRVVNSYARDKKLLKEKDANLTGDDVREGLAA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  
Sbjct: 299 IVSIKLAEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRKG L+I  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPEECELYIVEGDSAGGSAKEGRDSMYQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTL 477
           AILP+RGKI+NVE+AR D++L + E+ +L
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNTEVQSL 447


>gi|170700644|ref|ZP_02891642.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria
           IOP40-10]
 gi|170134463|gb|EDT02793.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria
           IOP40-10]
          Length = 660

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 220/675 (32%), Positives = 331/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADQSVSVEDDGRGIPFGMHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F +G +  PL   G+      +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLTTQGAGRGEKKSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQTWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDN------------ISIDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R                    + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADARSTDETFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +++  IS+      +      D  +           + +              +    A
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYESTV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 723 LDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFS 778
           LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D        +
Sbjct: 575 LDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYESTVARMT 634

Query: 779 RLMGD-EVEPRREFIQENSLPSALDI 803
            LMG  E   RR +++E       DI
Sbjct: 635 MLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|206560814|ref|YP_002231579.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia J2315]
 gi|198036856|emb|CAR52756.1| topoisomerase IV subunit B [Burkholderia cenocepacia J2315]
          Length = 660

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 222/675 (32%), Positives = 330/675 (48%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADQSVSVEDDGRGIPFGMHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G + E+ F  G +  PL     G     +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKMAELGFAEGDVVKPLATQAVGRGEKKSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQTWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSTDETFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLREGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +Y+ +PPL+ +       +     Y  D+  LE  L            
Sbjct: 528 FKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            D++  IS+      +      D  +           + +              +    A
Sbjct: 584 RDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D     
Sbjct: 571 LEAILDKLRKDGVRDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|254190689|ref|ZP_04897196.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|157938364|gb|EDO94034.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pasteur
           52237]
          Length = 660

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 225/675 (33%), Positives = 332/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EE +   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHPDQSVSVEDDGRGIPFGLHPEEKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I ++ F +G +  PL   G+      +GT VT 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGRIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +        G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQSWKY--DDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      +K 
Sbjct: 351 KERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKKK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDGAHI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELETILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +S+  IS+      +      D  +           + +              +    A
Sbjct: 584 RESQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGELDFEATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +   N L     + E
Sbjct: 643 AARRNWLEEKGNEVE 657



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    ++ R+KGLGEM+A QLW+TT+NPDTR L+ V +   D     
Sbjct: 571 LETILDKLRKDGVRESQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGELDFEATV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRNWLEEKGNEVEADI 660


>gi|302566245|pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
           That Plays A Critical Role In Gyrase Function
          Length = 420

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 183/419 (43%), Positives = 249/419 (59%), Gaps = 8/419 (1%)

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
             AR+ TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILP
Sbjct: 2   NAAREXTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILP 61

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVE+ARFDK LSSQE+ TLITALG GIG+D ++ +KLRYH III TDADVDG+H
Sbjct: 62  LKGKILNVEKARFDKXLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIXTDADVDGSH 121

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTLLLTFF+RQ P ++  G +YI +PPLY + +GK  QY+KD+E+ + Y I+ +L    
Sbjct: 122 IRTLLLTFFYRQXPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAXDQYQISIALDGAT 181

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEI 630
                S   ++   L   + +     K I      + K  +++ +           D++ 
Sbjct: 182 LHTNASAPALAGEALEKLVSEYNATQKXINRXERRYPKAXLKELIYQPTLTEADLSDEQT 241

Query: 631 NVSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
                + L + LN   +     K +   +   N  + +V+    GV   + L+   I   
Sbjct: 242 VTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGG 301

Query: 686 GSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
             +       ++         +     +  +      LD +    R+G+S+QRYKGLGE 
Sbjct: 302 EYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEX 361

Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           N  QLWETT +P++R  LRV + DA  AD LF+ L GD VEPRR FI+EN+L  + +DI
Sbjct: 362 NPEQLWETTXDPESRRXLRVTVKDAIAADQLFTTLXGDAVEPRRAFIEENALKAANIDI 420


>gi|194339079|gb|ACF49455.1| GyrB [Amycolatopsis keratiniphila subsp. keratiniphila]
          Length = 460

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 211/463 (45%), Positives = 297/463 (64%), Gaps = 16/463 (3%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
            EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T LHA
Sbjct: 1   QEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDIHPKEQKPTLEVVLTVLHA 60

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SY VSGGLHGVGVSVVNALS+ L   +KR G+ +   + + I    L   G A
Sbjct: 61  GGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQVYTDQIP-GELEDLGPA 119

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI---- 221
             DTGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  +        
Sbjct: 120 E-DTGTTITFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEADAS 178

Query: 222 ---------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                    T  Y GG+E FV +++  K P+  S I  +     + +++AM+WN+G+  +
Sbjct: 179 GQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTGLEVEVAMQWNNGFTPS 238

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +++SI
Sbjct: 239 VYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLSGDDVREGLAAIVSI 298

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  R AA
Sbjct: 299 KLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQARMAA 358

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    QAILP
Sbjct: 359 RKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMYQAILP 418

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           +RGKI+NVE+AR D++L + E+ +LITALGTGI ++ FDI KL
Sbjct: 419 IRGKIINVEKARIDRVLKNTEVQSLITALGTGIHEE-FDIEKL 460


>gi|16330312|ref|NP_441040.1| DNA gyrase B subunit [Synechocystis sp. PCC 6803]
 gi|2501296|sp|P77966|GYRB_SYNY3 RecName: Full=DNA gyrase subunit B; Contains: RecName: Full=Ssp
           gyrB intein
 gi|1652801|dbj|BAA17720.1| DNA gyrase B subunit [Synechocystis sp. PCC 6803]
          Length = 1078

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 213/439 (48%), Positives = 301/439 (68%), Gaps = 5/439 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  +  ++Y AD IQ+L+GL+ V+KRP MYIG T G  GLHH++YEV+DNAIDE+L GY
Sbjct: 1   MT--MTTTNYGADQIQVLEGLEPVRKRPGMYIGST-GPKGLHHLVYEVVDNAIDEALAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + +N DGS TV DNGRGIPTD+H   G SA E ++T LHAGGKF    YKVSGGL
Sbjct: 58  CTHIEIDINADGSVTVVDNGRGIPTDIHPTTGRSALETVLTVLHAGGKFGGGGYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS W+++++ R+G  +   F  G     L  T + G+ TGT+V+FLP + 
Sbjct: 118 HGVGVSVVNALSEWVEVKVWRQGKEHFQRFERGNPIGTLEATPNEGHSTGTQVSFLPDTQ 177

Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           IF    +F+Y TL  RL+EL++LN+ V+I+  D+R+   +E   +Y+GGI  +V+Y+   
Sbjct: 178 IFKDGIEFDYHTLASRLKELAYLNAGVRITFGDRRADSLKEEQFYYEGGIREYVTYMTTD 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           K PL +  I   G ++++ +++A++W  D Y + +L F NNI   DGGTHL GL++ LTR
Sbjct: 238 KTPLHEEIIYTSGEKNDVQVEVALQWCVDAYSDTLLGFANNIRTIDGGTHLEGLKAVLTR 297

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + S   K    K    ++ G++ REG T V+S+K+PDP F  QTK KL ++EVR +V++
Sbjct: 298 TLNSVARKRNKLKDGDSNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDT 357

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + L+ +LE +P  A  I++K + A    +AARRAR+L RRK VL+ ++LPGKLADCS
Sbjct: 358 LVGEALTEFLEFNPGVADAIIEKAVQAFKAAEAARRARELVRRKSVLESSTLPGKLADCS 417

Query: 419 ERDPKKSELFLVEGDSAGG 437
            +DP +SE+F+VEGDSAGG
Sbjct: 418 SKDPSESEIFIVEGDSAGG 436



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 117/302 (38%), Gaps = 37/302 (12%)

Query: 529  IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I NG+L I     Y I+         D      +  +++L+ E         V++ N   
Sbjct: 787  IENGYLDISAYDSYRISTKDKSLLRFDRFCERYFENDENLAREA--------VLNYNHRI 838

Query: 589  NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
              I+   +   +     P+     +   V       +       ++       LN     
Sbjct: 839  VNIEAVSETIDVYDIEVPHTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKILNIEKTD 898

Query: 649  SEKSWHGSI--------------NNSDILVKRIARGVQ-EQFVLEGSSIFS----FGSKY 689
              K +  +               ++ DI   R  R V      ++G+ I +    F  +Y
Sbjct: 899  DAKIYKNTEIQALITALGLGIKGDDFDISSLRYHRVVIMTDADVDGAHIRTLLLTFFYRY 958

Query: 690  KRIFSNR--IEENYLTILSLICNGDKIKITGPCSLLDTIFS---IGRKGISMQRYKGLGE 744
            +R   ++  I      +  L    +         L + I           ++QR+KGLGE
Sbjct: 959  QRDLVDQGYIYIACPPLYKLERGKNHFYCYSDRELQEQISQFPPNA--NYTIQRFKGLGE 1016

Query: 745  MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP---SAL 801
            M   QLW+TT+NP++R++ RV I DA++AD +F+ LMGD V PRREFI+        + L
Sbjct: 1017 MMPQQLWDTTMNPESRTMKRVHIEDAAEADRIFTVLMGDRVAPRREFIETYGTKLDLTDL 1076

Query: 802  DI 803
            DI
Sbjct: 1077 DI 1078



 Score =  133 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 120/250 (48%), Gaps = 6/250 (2%)

Query: 389  RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
             +   R   L     +++I ++   +       P      L  G     SAKQGR R  Q
Sbjct: 823  DENLAREAVLNYNHRIVNIEAVSETIDVYDIEVPHTHNFALASGVFVHNSAKQGRDRRFQ 882

Query: 449  AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            AILPLRGKILN+E+    K+  + EI  LITALG GI  D FDI+ LRYH+++IMTDADV
Sbjct: 883  AILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGDDFDISSLRYHRVVIMTDADV 942

Query: 509  DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
            DGAHIRTLLLTFF+R    L+  G++YI  PPLY + RGK+  Y   +  L++ +     
Sbjct: 943  DGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPLYKLERGKNHFYCYSDRELQEQISQFPP 1002

Query: 569  SEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
            +           G +    L +       ++   +     H +   E   I  V   +  
Sbjct: 1003 NANYTIQRFKGLGEMMPQQLWDT-----TMNPESRTMKRVHIEDAAEADRIFTVLMGDRV 1057

Query: 628  QEINVSLASK 637
                  + + 
Sbjct: 1058 APRREFIETY 1067


>gi|171317650|ref|ZP_02906835.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria MEX-5]
 gi|171097178|gb|EDT42028.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria MEX-5]
          Length = 660

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 221/675 (32%), Positives = 331/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              I VTL+ D S +V D+GRGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQIIVTLHTDQSVSVEDDGRGIPFGMHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F +G +  PL   G+      +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLATQGAGRGEKKSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQTWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDN------------ISIDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R                    + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADARSADETFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN   A
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWEA 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +++  IS+      +      D  +           + +              +    A
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 723 LDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFS 778
           LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D        +
Sbjct: 575 LDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATVARMT 634

Query: 779 RLMGD-EVEPRREFIQENSLPSALDI 803
            LMG  E   RR +++E       DI
Sbjct: 635 MLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|254251764|ref|ZP_04945082.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
 gi|124894373|gb|EAY68253.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
          Length = 660

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 224/675 (33%), Positives = 330/675 (48%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADHSVSVEDDGRGIPFGLHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F +G +  PL     G     +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQPAGRGDKKSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +        G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQTWKY--DDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +Y+ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +++  IS+      +      D  +           + +              +    A
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYDATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 9/92 (9%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT----DASQ 772
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+     DA+ 
Sbjct: 571 LEAILDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYDATV 630

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           A  + + LMG  E   RR +++E       DI
Sbjct: 631 A-RM-TMLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|325519490|gb|EGC98871.1| DNA topoisomerase IV subunit B [Burkholderia sp. TJI49]
          Length = 660

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 224/675 (33%), Positives = 331/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GRQITVTLHADQSVSVEDDGRGIPFGMHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F +G +  PL     G     +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQSAGRGEKKSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L++++S E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKSGERQSWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDTARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +Y+ +PPL+ +       +     Y  D+  LE  L            
Sbjct: 528 FKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            D++  IS+      +      D  +           + +              +    A
Sbjct: 584 RDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATVE-RMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D     
Sbjct: 571 LEAILDKLRKDGVRDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           +  + LMG  E   RR +++E       DI
Sbjct: 631 ERMTMLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|224826214|ref|ZP_03699316.1| DNA topoisomerase IV, B subunit [Lutiella nitroferrum 2002]
 gi|224601315|gb|EEG07496.1| DNA topoisomerase IV, B subunit [Lutiella nitroferrum 2002]
          Length = 654

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 214/582 (36%), Positives = 307/582 (52%), Gaps = 27/582 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              YD  S+++LKGL+ VK+RP MY   TD      H+  EV+DNA DE+L G+A  I V
Sbjct: 2   TQQYDESSVRVLKGLEPVKERPGMYTRTTDPT----HICQEVIDNAADEALGGFARKIAV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF---NQKSYKVSGGLHGV 123
           TL+ DGS +V D+GRGIP  LH +EG+   E++ TRLHAGGKF   +  +Y  SGGLHGV
Sbjct: 58  TLHQDGSLSVEDDGRGIPVGLHPQEGVPVVELVFTRLHAGGKFNKKDGGAYAFSGGLHGV 117

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIF 182
           GVSV NALS+ L++ +KREG +Y M+F  G +  PL   G  G  T GT V   P    F
Sbjct: 118 GVSVTNALSTRLEVEVKREGGVYRMAFAGGDVIEPLARVGDCGARTSGTRVRVWPDGKYF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               ++   L+  LR  + L   V ++L  +R          Y  G++++++ L    +P
Sbjct: 178 ESPRYSLPELERLLRAKAVLLPGVAVTLTIERPSGDEVKVWQYPQGLKSYLAELCNGDEP 237

Query: 243 L---MQSPIRIQGSRDNISIDLAMRWNDGYHEN---VLCFTNNIPQKDGGTHLSGLRSAL 296
           +         I    +  +    ++W   + E+      + N IP   GGTH +GLR+ +
Sbjct: 238 VAPLFSGEAYIGDDHEQFAKGEGVQWALAWFEDGAGGESYVNLIPTPSGGTHEAGLRAGV 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
              + S+V+      +    ++ +D       VLS ++ DP+F  QTKEKL S +   ++
Sbjct: 298 FEAVKSFVDHHNLLPRG-VKLMAEDVWSRVRFVLSARVLDPQFQGQTKEKLTSRDALKLI 356

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
                D +  WL +H    K I +    A     +  ++     +K    +A LPGKL D
Sbjct: 357 SGLARDPVELWLNQHVEAGKKIAE---LAIRQAQSRLKSVKKVEKKKGSGVAVLPGKLTD 413

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C   D +++ELFLVEGDSAGGSAK  R +E QAILPLRGK+LN      D++ S+ EI  
Sbjct: 414 CESEDIERNELFLVEGDSAGGSAKLARDKEYQAILPLRGKVLNSWETDRDQLFSNAEIHD 473

Query: 477 LITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           +  A+G          +   LRY KI I++DADVDG+HI+ LLLT F+R   +L+ NG +
Sbjct: 474 ISVAIGVDPHAPGEKADLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFSALLANGHI 533

Query: 535 YIIKPPLYGI-------TRGKSLQYVKDEESLEDYLINQSLS 569
            I +PPL+ +        R     Y  DE  LE  L      
Sbjct: 534 CIAQPPLFRVDVPGQGKHRPPKKLYALDEGELEAILDRLRSE 575



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD-- 774
             ++LD + S G      S+ R+KGLGEMN  QL +TT++PDTR L +V++   ++AD  
Sbjct: 565 LEAILDRLRSEGVRENAWSISRFKGLGEMNPEQLKDTTMHPDTRRLTQVRVRPEAEADTR 624

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +F+ LMG  E   RR +++        DI
Sbjct: 625 RMFTMLMGKGEAASRRGWMEAKGNEVEADI 654


>gi|194339093|gb|ACF49462.1| GyrB [Amycolatopsis niigatensis]
          Length = 448

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 200/449 (44%), Positives = 283/449 (63%), Gaps = 15/449 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T
Sbjct: 1   HHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   IK  G  +   ++N +   PL  
Sbjct: 61  ILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVNGRSWRQEYLNQVP-GPLED 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A  DTGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +    
Sbjct: 120 LGPAT-DTGTTITFWADDSIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETE 178

Query: 222 T-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                           Y GG+E FV +++  K P+ +S I        + +++AM+WN G
Sbjct: 179 EDAAGKQARVKEVVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAGLEVEVAMQWNTG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +
Sbjct: 239 FTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  
Sbjct: 299 IVSIKLAEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPSEAKTIINKSISSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTL 477
           AILP+RGKI+NVE+AR D++L + E+ +L
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNTEVQSL 447


>gi|194339111|gb|ACF49471.1| GyrB [Amycolatopsis sulphurea]
          Length = 464

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 210/467 (44%), Positives = 298/467 (63%), Gaps = 16/467 (3%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           H++ EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP DLH +E     EV++T 
Sbjct: 1   HLVQEVVDNSVDEAMAGFATKVEVTLLADGGVRVVDDGRGIPVDLHPKEQKPTLEVVLTI 60

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   I+  G  +   + + +   PL   
Sbjct: 61  LHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIQVGGRSWRQLYTDQVP-GPLEDL 119

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI- 221
           G A  +TGT +TF   S+IF    +N++T+  RL+E++FLN  + +SL D+R  +     
Sbjct: 120 GPAT-ETGTTITFWADSNIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVSDEETEA 178

Query: 222 ------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
                          Y GG+E FV +++  K P+  S I  +     + +++AM+WN G+
Sbjct: 179 DAEGKQARVKEKVYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTGLEVEVAMQWNTGF 238

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
             +V  F N I   +GGTH  G R+ALTR + +Y       ++   ++ GDD REG  ++
Sbjct: 239 TPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLREKDANLTGDDVREGLAAI 298

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  R
Sbjct: 299 VSIKLAEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPAEAKTIINKSISSAQAR 358

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AAR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR    QA
Sbjct: 359 LAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQA 418

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           ILP+RGKI+NVE+AR D++L + E+ +LITALGTGI  D FD++KLR
Sbjct: 419 ILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI-HDDFDLSKLR 464


>gi|237748747|ref|ZP_04579227.1| topoisomerase IV subunit B [Oxalobacter formigenes OXCC13]
 gi|229380109|gb|EEO30200.1| topoisomerase IV subunit B [Oxalobacter formigenes OXCC13]
          Length = 659

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 212/631 (33%), Positives = 307/631 (48%), Gaps = 39/631 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  ++ +SY   SI++LKGL+ V++RP MY   T  E+ L H+I EV+DNA DE++ GY
Sbjct: 1   MA--LKETSYSEASIKVLKGLEPVRQRPGMY---TRTENPL-HIITEVIDNASDEAIGGY 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF---NQKSYKVS 117
              I VTLN DGS +V D+GRGIP  +H EE +   E++ TRLH+GGKF      +Y  S
Sbjct: 55  CKNINVTLNADGSVSVEDDGRGIPVGMHPEEKVPTVEIVFTRLHSGGKFTKGGDNAYAFS 114

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTF 175
           GGLHGVGVSV NALS  +++ + RE  +++++F +G +  PL           +GT+VT 
Sbjct: 115 GGLHGVGVSVTNALSKRIEVTVWREKEVHQIAFTDGEVTEPLTSRPIARGEKKSGTKVTV 174

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY---------- 225
            P +  F         L+H LR  + L   V + L ++++ E                  
Sbjct: 175 WPDARYFDSMTIPLAELKHLLRSKAILLPGVHVELQNEKTNETETWHYENGLRGYLSQEL 234

Query: 226 --KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
               G E  +   +        +     G      +     W          F N IP  
Sbjct: 235 ELTTGEEIVIPLFEGELYADHDNEGFASGEGAAWVV----AWTTEGPLIRESFVNLIPTT 290

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L   + S+ E           ++ +D     + VLS K+ DP+F  Q 
Sbjct: 291 AGGTHESGLRDGLFNAVKSFTEIH-SLLPKGVRLLPEDVFARVSFVLSAKVLDPQFQGQI 349

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V  FV      WL ++    + + + V+  +  R    +      +K 
Sbjct: 350 KERLNSRDAVRLVSHFVKPAFETWLHQNVEYGRKLAELVIKQAQSRMRQLQK---VEKKK 406

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 407 SSAVAVLPGKLTDCESHDISRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWET 466

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++QEI  +  A+G      + D +   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 467 EKDRLFANQEIHDISVAIGVDPHTPADDPDLSGLRYGKICILSDADVDGSHIQVLLLTLF 526

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FR  P LI NG + + +PPLY I       +     Y  D+  L   L         +  
Sbjct: 527 FRHFPKLIENGNICVARPPLYRIDAPARGKKPMQKLYALDDSELNGILEKLKSEGIKDNA 586

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
                     ++         ++   +   P
Sbjct: 587 LGISRFKGLGEMNAEQLWETTLNPDTRRLLP 617



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 5/87 (5%)

Query: 722 LLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK--ITDASQADDLF 777
           +L+ + S G K   + + R+KGLGEMNA QLWETTLNPDTR LL +   I   +++++ F
Sbjct: 573 ILEKLKSEGIKDNALGISRFKGLGEMNAEQLWETTLNPDTRRLLPITFGIFSRNESEERF 632

Query: 778 SRLMGD-EVEPRREFIQENSLPSALDI 803
             LMG  E   RR +++E+   +  DI
Sbjct: 633 QMLMGKGEAAARRNWMEEHGNEAEADI 659


>gi|68138664|gb|AAY85998.1| GyrB [Burkholderia cenocepacia]
          Length = 611

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 264/615 (42%), Positives = 377/615 (61%), Gaps = 20/615 (3%)

Query: 143 GNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           G    M F  G+              +P++VTG    + GTEV F+    IF   +++YD
Sbjct: 1   GKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  R+RELSFLN+ V+I L D RS +       + GG++ FV ++++ K  L  +    
Sbjct: 60  ILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEFINKTKSTLHPTVFFA 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
            G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +
Sbjct: 118 NGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIA 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E
Sbjct: 178 KKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
            P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP K E+++V
Sbjct: 238 TPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIV 297

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ +
Sbjct: 298 EGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDY 357

Query: 491 DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL 550
           ++ KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  
Sbjct: 358 NLEKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDE 417

Query: 551 QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
           +Y+KD+  L  +++  +L     +  ++   IS + L       L    +I+     +D 
Sbjct: 418 RYLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIERLSRLYDP 477

Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKR 666
             +E AV+ GV    S++E   + A  L   L+  A K+E      +        + V+R
Sbjct: 478 AALE-AVMDGVVIDLSNEESTEASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVER 536

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
              G     V++     +   +     +N  +        +      + +    S +  +
Sbjct: 537 THHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMVVADFKSAMKWL 596

Query: 727 FSIGRKGISMQRYKG 741
            +   + +S QRYKG
Sbjct: 597 LADAERNVSKQRYKG 611


>gi|78067168|ref|YP_369937.1| DNA topoisomerase IV subunit B [Burkholderia sp. 383]
 gi|77967913|gb|ABB09293.1| DNA topoisomerase IV subunit B [Burkholderia sp. 383]
          Length = 660

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 222/675 (32%), Positives = 330/675 (48%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADQSVSVEDDGRGIPFGMHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F  G +  PL   G+      +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFAEGDVVKPLATQGAGRGEKKSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L++++S E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKSGERQTWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDESVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G + + +PPL+ +       +     Y  D+  LE  L            
Sbjct: 528 FKHFPQLIERGHVCVARPPLFRVDAPARGKKAAQKLYALDDGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +++  IS+      +      D  +           + +              +    A
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D     
Sbjct: 571 LEAILDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|312797004|ref|YP_004029926.1| Topoisomerase IV subunit B [Burkholderia rhizoxinica HKI 454]
 gi|312168779|emb|CBW75782.1| Topoisomerase IV subunit B (EC 5.99.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 680

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 226/674 (33%), Positives = 327/674 (48%), Gaps = 44/674 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+      +Y   SI++LKGL+ VK+RP MY   T  E+ L H++ EV+DNA DE+L G+
Sbjct: 19  MATKKSGPAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIVQEVIDNASDEALGGF 74

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              I VTL+ DGS +V D+GRGIP  LH EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 75  GTQIIVTLHTDGSVSVEDDGRGIPFGLHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 134

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVT 174
           GGLHGVGVSV NALS  L + + R+G + ++ F +G +   L V    G     +GT VT
Sbjct: 135 GGLHGVGVSVTNALSQRLDVTVWRDGKVADIGFSHGDVVRALTVRAANGRVDKKSGTRVT 194

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
             P    F   +     LQ  LR  + L   V++ LI +++ E +      K G+  ++ 
Sbjct: 195 AWPDPKYFDSANLPQSELQRLLRSKAVLLPGVEVVLITEKTGERQSWKY--KDGLRGYLL 252

Query: 235 YLDRHKKPLMQSPIRIQGSRDNIS-------------IDLAMRWNDGYHENVLCFTNNIP 281
                   L+      +G R   S                 + W++        + N IP
Sbjct: 253 EGLAGYDTLIP---LFEGERYAGSSRTTDDTFAEGEGASWVVAWSEEGPLLRESYVNLIP 309

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  
Sbjct: 310 TPAGGTHESGLRDGLFQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 368

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           Q KE+L S +   +V SFV   L  WL +H    + + + V+  +  R  A +      +
Sbjct: 369 QIKERLNSRDAVRLVSSFVRPSLELWLNQHVEHGRKLAELVIKQAQARTRAGQK---VEK 425

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           +    +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN  
Sbjct: 426 RKSSGVAVLPGKLVDCESTDVARNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTW 485

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLT 519
               D++ ++ E+  +  A+G         I+   LRY KI I++DADVDG+HI+ LLLT
Sbjct: 486 ETERDRLFANNEVHDIAVAIGVDPHASDDAIDLSNLRYGKICILSDADVDGSHIQVLLLT 545

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIE 573
            FFR  P LI  G +Y+ +PPL+ +       +     Y  DE  LE  L          
Sbjct: 546 LFFRHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG--- 602

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
              +S   IS+      ++     D  +           +            +       
Sbjct: 603 -VRESAWTISRFKGLGEMNAEQLWDTTMNPDTRRLMPVQLGGLDFDATIGRMTMLMGKGE 661

Query: 634 LASKLANRLNFIAE 647
            A++ A       E
Sbjct: 662 AAARRAWLEEKGNE 675



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G      ++ R+KGLGEMNA QLW+TT+NPDTR L+ V++   D     
Sbjct: 591 LEAILDKLRKDGVRESAWTISRFKGLGEMNAEQLWDTTMNPDTRRLMPVQLGGLDFDATI 650

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E    +  DI
Sbjct: 651 GRMTMLMGKGEAAARRAWLEEKGNEAQADI 680


>gi|294338943|emb|CAZ87287.1| DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
           [Thiomonas sp. 3As]
          Length = 652

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 210/658 (31%), Positives = 316/658 (48%), Gaps = 39/658 (5%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y   SI++LKGL+ V++RP MY   T  ++ L H++ EV+DN+ DE+L GY   I VTL
Sbjct: 8   AYSESSIRVLKGLEPVRQRPGMY---TRTDNPL-HIVQEVIDNSADEALGGYCQHIAVTL 63

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLHGVGV 125
           + DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGGLHGVGV
Sbjct: 64  HTDGSISVEDDGRGIPFGLHPEENAPVVELVFTRLHAGGKFDKLQGGAYSFSGGLHGVGV 123

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSSDIFS 183
           SV NAL++ L++ + R+G +  + F  G +  PL V  +A     +GT V   P +  F 
Sbjct: 124 SVTNALAARLEVTVWRDGQVAHLVFSGGDVIEPLAVRKAARDERRSGTRVRVWPDAKYFD 183

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
                   L H LR  + L   V++ LI +++ +                S        L
Sbjct: 184 SPHLPLAELTHLLRSKAVLLPGVKVDLIQEKTGDTTHWEYARGLRDYLLSSLPAEPYIDL 243

Query: 244 MQSPIRIQGSRDNISID-----LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +       S      +       + + +        + N IP   GGTH +GLR  L +
Sbjct: 244 FEGEHYASASEQESFAEGEGAAWCVAFTEEGAVLRESYVNLIPTPAGGTHEAGLREGLFQ 303

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  ++E     +     ++ +D     + VLS ++ DP+F  Q KEKL S +   +V  
Sbjct: 304 AVKGFIELHN-LQPKGVKLLPEDLFARASFVLSARVLDPQFQGQIKEKLNSRDALRLVGQ 362

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V   L  WL E   + K + + V+  +  R    RA     +K    +A LPGKL DC 
Sbjct: 363 AVRPTLELWLHERVDQGKKLAELVIRQAQSRL---RAAQKVEKKKGSGVAVLPGKLTDCE 419

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RD +++ELFLVEGDSAGGSAK GR +E QA+LPLRGK+LN      D++ ++ EI  + 
Sbjct: 420 SRDTERTELFLVEGDSAGGSAKMGRDKEFQAVLPLRGKVLNSWEIERDRLFANTEIHDIA 479

Query: 479 TALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
            A+G          +   LRY KI I++DADVDG+HI+ LLLT FFR  P LI  G + +
Sbjct: 480 VAIGVDPHGKDDMPDLSNLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIERGHVCV 539

Query: 537 IKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----EEIELFCDSKGVISKN 585
            +PPLY +       +     YV D+  L+                        G +S  
Sbjct: 540 ARPPLYRLDAPARGKKPAQKIYVLDDAELQAAQDKLRKDGLKDGAWQISRFKGLGEMSAE 599

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            L +       ++   +  Y        +   +      + + +    L  +  +++ 
Sbjct: 600 QLWDT-----TLNPDTRRLYRVRPD---DAEALFHQLMGKGEAQARRGLMEEYGDQIE 649



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 6/88 (6%)

Query: 719 PCSLLDTIFSIGRK-GI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
             +  D +   G K G   + R+KGLGEM+A QLW+TTLNPDTR L RV+  DA     L
Sbjct: 568 LQAAQDKLRKDGLKDGAWQISRFKGLGEMSAEQLWDTTLNPDTRRLYRVRPDDAEA---L 624

Query: 777 FSRLMGD-EVEPRREFIQENSLPSALDI 803
           F +LMG  E + RR  ++E      +DI
Sbjct: 625 FHQLMGKGEAQARRGLMEEYGDQIEVDI 652


>gi|309781095|ref|ZP_07675833.1| DNA topoisomerase IV, B subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920161|gb|EFP65820.1| DNA topoisomerase IV, B subunit [Ralstonia sp. 5_7_47FAA]
          Length = 661

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 218/676 (32%), Positives = 321/676 (47%), Gaps = 44/676 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     S Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DN+ DE+L GY
Sbjct: 1   MSK---TSQYSESSIKVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNSADEALGGY 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
             +I VTL+ DGS +V D+ RGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 54  GKLIAVTLHRDGSVSVEDDARGIPVGIHPEEGVPVVEIVYTRLHAGGKFDKGRGGAYAFS 113

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L++ + R+GN+  ++F  G +  PL    +      +GT V  
Sbjct: 114 GGLHGVGVSVTNALSTRLEVTVWRDGNVSTLAFSGGDVIEPLTTRKAERGEKKSGTRVRA 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P +  F  ++     LQ  LR  + L   V+++L  +++ E  E       G+  ++  
Sbjct: 174 WPDAKYFDSENIPLAELQRLLRSKAVLLPGVKVTLTLEKTGETLEWQYDQ--GLRGYLVE 231

Query: 236 LDRHKKPLMQSPIRIQGSRDN-------------ISIDLAMRWNDGYHENVLCFTNNIPQ 282
                          +G                       + W +        + N IP 
Sbjct: 232 SLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLIPT 291

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH SGLR  L + + S+VE           ++ +D     + VLS K+ DP+F  Q
Sbjct: 292 PAGGTHESGLREGLFQAVKSFVEMHA-LLPKGVKLMSEDVFARASFVLSAKVLDPQFQGQ 350

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            KE+L S +   +V +F    L  WL +H    K + + V+  +  R    RA     +K
Sbjct: 351 IKERLNSRDAVRLVSTFSRPALELWLNQHVDHGKKLAELVIKQAQAR---TRAAQKVEKK 407

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
               +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN   
Sbjct: 408 KGSGVAVLPGKLTDCESDDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTF 520
              D++ ++ E+  +  A+G      +  ++   LRY KI I++DADVDGAHI+ LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPNDTVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           FF+  P LI  G + + +PPLY +       +     Y  D+  LE              
Sbjct: 528 FFKHFPQLIDRGHVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDG---- 583

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
             D    IS+      +      +  +           + +       N   +  +    
Sbjct: 584 VKDGAWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQDQTINM-MNMLMGKGE 642

Query: 635 ASKLANRLNFIAEKSE 650
           A      L     + E
Sbjct: 643 AGARRTWLEARGNEVE 658



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 19/92 (20%)

Query: 724 DTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRV---------KITDASQ 772
           D +   G + G   + R+KGLGEM+A QLWETT+NPDTR LL V          I     
Sbjct: 577 DKLRKDGVKDGAWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQDQTIN---- 632

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + + LMG  E   RR +++        DI
Sbjct: 633 ---MMNMLMGKGEAGARRTWLEARGNEVEADI 661


>gi|34496568|ref|NP_900783.1| DNA topoisomerase IV subunit B [Chromobacterium violaceum ATCC
           12472]
 gi|34102422|gb|AAQ58788.1| topoisomerase IV subunit B [Chromobacterium violaceum ATCC 12472]
          Length = 655

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/596 (34%), Positives = 309/596 (51%), Gaps = 33/596 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    YD  S+++LKGL+ VK+RP MY   TD      H+  EV+DNA DE+L G+A  I
Sbjct: 1   MTQQQYDESSVRVLKGLEPVKERPGMYTRTTDPT----HICQEVIDNAADEALGGFARKI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF---NQKSYKVSGGLH 121
            VT++ DGS +V D+GRGIP  LH +EG+   E++ TRLHAGGKF   +  +Y  SGGLH
Sbjct: 57  AVTVHQDGSLSVEDDGRGIPVGLHPQEGVPVVELVYTRLHAGGKFNKKDGGAYAFSGGLH 116

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSD 180
           GVGVSV NALS+ L++ +KREG ++ + F  G +  PL   G  G  T GT V   P   
Sbjct: 117 GVGVSVTNALSTRLEVEVKREGGVHRLVFSGGDVIEPLARVGDCGPRTSGTRVRVWPDGK 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    ++   L+  LR  + L   V ++L  ++          Y  G++++++ L    
Sbjct: 177 YFESPRYSMQELERLLRAKAVLLPGVAVTLTVEKPSGDEVKAWQYPDGLKSYLAELCNGD 236

Query: 241 KPLMQ-----------SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +P+                  +G     ++        G       + N IP   GGTH 
Sbjct: 237 EPVAPLFAGEAYIGDDHEQFAKGEGAQWAMAWFEDGASG-----ESYVNLIPTPVGGTHE 291

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GLR+ +   + S+++      +    ++ +D       VLS ++ DP+F  QTK+KL S
Sbjct: 292 AGLRAGVYDAVKSFIDHHNLLPRG-VKLMAEDVWSRVRFVLSARVLDPQFQGQTKDKLTS 350

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            +   ++     D +  WL +H    K I +    A     +  ++     +K    +A 
Sbjct: 351 RDALKLISGLARDPVELWLNQHVEAGKKIAE---LAIRQAQSRLKSVKKVEKKKGSGVAV 407

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DC   D +++ELFLVEGDSAGGSAK  R +E QAILPLRGK+LN      D++ 
Sbjct: 408 LPGKLTDCESEDIERNELFLVEGDSAGGSAKLARDKEYQAILPLRGKVLNSWETDRDQLF 467

Query: 470 SSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           S+ EI  +  A+G      + D +    RY KI I++DADVDG+HI+ LLLT FFR  P 
Sbjct: 468 SNAEIHDIAVAIGVDPHGPNDDPDLSGQRYGKIAILSDADVDGSHIQVLLLTLFFRHFPR 527

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           L+ NG +YI +PPL+ +      +        + Y +++     I     S+GV  
Sbjct: 528 LVENGNIYIAQPPLFRVDVPGQGK---TRPPRKLYALDEGEMSAILDRLRSEGVRE 580



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 720 CSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADD 775
            ++LD + S G      S+ R+KGLGEMN  QL +TT+NPDTR L+RV++      +  D
Sbjct: 567 SAILDRLRSEGVRENAWSISRFKGLGEMNPEQLKDTTMNPDTRRLVRVQVRPGMLQETLD 626

Query: 776 LFSRLMGD-EVEPRREFIQENSLPSALDI 803
           +F  LMG  E   RR +++        DI
Sbjct: 627 MFVMLMGKGEASSRRGWMEAKGNEVEADI 655


>gi|194339107|gb|ACF49469.1| GyrB [Amycolatopsis saalfeldensis]
          Length = 455

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 207/457 (45%), Positives = 291/457 (63%), Gaps = 15/457 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++ EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP D+H +E     EV++T
Sbjct: 1   HHLVQEVVDNSVDEAMAGHATRVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L   IK  G  +   + + I    L  
Sbjct: 61  ILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTRLLAEIKVGGRSWRQLYTDQIA-GELED 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A  DTGT +TF   S IF    +N++T+  RL+E++FLN  + +SL D+R  +    
Sbjct: 120 LGPAE-DTGTTITFWADSGIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETE 178

Query: 222 T-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                           Y GG+E FV +++  K P+ +S I        + +++AM+WN+G
Sbjct: 179 QDAQGKQARVKEKVYCYPGGLEDFVRHINASKDPIHESVISFDAKGPGLEVEVAMQWNNG 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + SY  +    K+   ++ GDD REG  +
Sbjct: 239 FTPSVYTFANTINTIEGGTHEEGFRAALTRVVNSYAREKKLLKEKDANLTGDDVREGLAA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  
Sbjct: 299 IVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPSEAKTIITKSISSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPGECELYIVEGDSAGGSAKEGRDSMYQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           AILP+RGKI+NVE+AR D++L + E+ +LITALGTGI
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI 455


>gi|115352447|ref|YP_774286.1| DNA topoisomerase IV subunit B [Burkholderia ambifaria AMMD]
 gi|115282435|gb|ABI87952.1| DNA topoisomerase IV subunit B [Burkholderia ambifaria AMMD]
          Length = 660

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 220/675 (32%), Positives = 330/675 (48%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              I VTL+ D S +V D+GRGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQIIVTLHTDQSVSVEDDGRGIPFGMHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F +G +  PL   G+      +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLATQGAGRGEKKSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQTWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDN------------ISIDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R                    + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADARSTDETFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +++  IS+      +      D  +           + +              +    A
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYESTV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 723 LDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFS 778
           LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D        +
Sbjct: 575 LDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYESTVARMT 634

Query: 779 RLMGD-EVEPRREFIQENSLPSALDI 803
            LMG  E   RR +++E       DI
Sbjct: 635 MLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|311337319|gb|ADP89909.1| DNA gyrase subunit B [Amycolatopsis sp. S1.3]
          Length = 461

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 210/464 (45%), Positives = 293/464 (63%), Gaps = 16/464 (3%)

Query: 45  IYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           + EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T LH
Sbjct: 1   VQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEVVLTILH 60

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SY VSGGLHGVGVSVVNALS+ L   IK  G  +   + N +   PL   G 
Sbjct: 61  AGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTNQVP-GPLEDLGP 119

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-- 222
           A  +TGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +       
Sbjct: 120 AT-ETGTTITFWADDGIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEEDA 178

Query: 223 -----------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
                        Y GG+E FV +++  K P+ +S I        + +++AM+WN G+  
Sbjct: 179 AGKPARIKEKVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAGLEVEVAMQWNTGFTP 238

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +++S
Sbjct: 239 SVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAAIVS 298

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           IK+ +P+F  QTK KL +SE ++ V+   N+ L  W E +P EAK I+ K + ++  R A
Sbjct: 299 IKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSAQARLA 358

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR    QAIL
Sbjct: 359 ARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQAIL 418

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           P+RGKI+NVE+AR D++L + E+ +LITALGTGI  D FD++KL
Sbjct: 419 PIRGKIINVEKARIDRVLKNTEVQSLITALGTGI-HDDFDLSKL 461


>gi|167562025|ref|ZP_02354941.1| DNA topoisomerase IV subunit B [Burkholderia oklahomensis EO147]
 gi|167569283|ref|ZP_02362157.1| DNA topoisomerase IV subunit B [Burkholderia oklahomensis C6786]
          Length = 660

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 224/675 (33%), Positives = 329/675 (48%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EE +   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHPDQSVSVEDDGRGIPFGLHPEERVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I ++ F +G +  PL     G     +GT VT 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAQLGFADGDVVKPLATQAAGRGEKKSGTRVTV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++  +++++ E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPTGELQRLLRSKAVLLPGVEVVFVNEKTGERQSWRY--EDGLRGYLLE 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 GMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      +K 
Sbjct: 351 KERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKKK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDLARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDGAHI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGAHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +++  IS+      +      D  +           +                +    A
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPIALGDLDFEATVE-RMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +   N L       E
Sbjct: 643 AARRNWLEEKGNDVE 657



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 99/299 (33%), Gaps = 47/299 (15%)

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           R     ++         L    + +        + V  K      +      D   +D  
Sbjct: 368 RPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKKKSSGVAVLPGKLTDCETEDLA 427

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
            N  + F+ +   +G        +   ++       LN    + ++ +  +    DI V 
Sbjct: 428 RN--ELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWETERDRLF-ANNEVHDISVA 484

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSN-----------RIEENYLTILSLICNGDK- 713
               GV      +G  + +       I S+            +   +     LI  G   
Sbjct: 485 I---GVDPHSPDDGVDLSNLRYGKICILSDADVDGAHIQVLLLTLFFKHFPQLIERGHVF 541

Query: 714 -------------------IKITGPCSL-LDTIFSIGRK-GI-----SMQRYKGLGEMNA 747
                               K+       L+ I    RK G+     S+ R+KGLGEM+A
Sbjct: 542 VARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRETQWSISRFKGLGEMSA 601

Query: 748 SQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            QLW+TT+NPDTR L+ + + D       +  + LMG  E   RR +++E       DI
Sbjct: 602 EQLWDTTMNPDTRRLMPIALGDLDFEATVERMTMLMGKGEAAARRNWLEEKGNDVEADI 660


>gi|187927924|ref|YP_001898411.1| DNA topoisomerase IV subunit B [Ralstonia pickettii 12J]
 gi|187724814|gb|ACD25979.1| DNA topoisomerase (ATP-hydrolyzing) [Ralstonia pickettii 12J]
          Length = 661

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 218/676 (32%), Positives = 321/676 (47%), Gaps = 44/676 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     S Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DN+ DE+L GY
Sbjct: 1   MSK---TSQYSESSIKVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNSADEALGGY 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
             +I VTL+ DGS +V D+ RGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 54  GKLIAVTLHKDGSVSVEDDARGIPVGIHPEEGVPVVEIVYTRLHAGGKFDKGRGGAYAFS 113

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L++ + R+GN+  ++F  G +  PL    +      +GT V  
Sbjct: 114 GGLHGVGVSVTNALSTRLEVTVWRDGNVSTLAFSGGDVIEPLTTRKAERGEKKSGTRVRA 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P +  F  ++     LQ  LR  + L   V+++L  +R+ E  E       G+  ++  
Sbjct: 174 WPDAKYFDSENIPQAELQRLLRSKAVLLPGVKVTLTLERTGETLEWQYDQ--GLRGYLVE 231

Query: 236 LDRHKKPLMQSPIRIQGSRDN-------------ISIDLAMRWNDGYHENVLCFTNNIPQ 282
                          +G                       + W +        + N IP 
Sbjct: 232 SLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLIPT 291

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH SGLR  L + + S+VE           ++ +D     + VLS K+ DP+F  Q
Sbjct: 292 PAGGTHESGLREGLFQAVKSFVEMHA-LLPKGVKLMSEDVFARASFVLSAKVLDPQFQGQ 350

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            KE+L S +   +V +F    L  WL +H    K + + V+  +  R    RA     +K
Sbjct: 351 IKERLNSRDAVRLVSTFSRPALELWLNQHVEHGKKLAELVIKQAQAR---TRAAQKVEKK 407

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
               +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN   
Sbjct: 408 KGSGVAVLPGKLTDCESDDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTF 520
              D++ ++ E+  +  A+G      +  ++   LRY KI I++DADVDGAHI+ LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPNDTVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           FF+  P LI  G + + +PPLY +       +     Y  D+  LE              
Sbjct: 528 FFKHFPQLIDRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDG---- 583

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
             +    IS+      +      +  +           + +       N   +  +    
Sbjct: 584 VKEGAWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQDQTINM-MNMLMGKGE 642

Query: 635 ASKLANRLNFIAEKSE 650
           A      L     + E
Sbjct: 643 AGARRTWLEARGNEVE 658



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 19/92 (20%)

Query: 724 DTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRV---------KITDASQ 772
           D +   G ++G   + R+KGLGEM+A QLWETT+NPDTR LL V          I     
Sbjct: 577 DKLRKDGVKEGAWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQDQTIN---- 632

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + + LMG  E   RR +++        DI
Sbjct: 633 ---MMNMLMGKGEAGARRTWLEARGNEVEADI 661


>gi|68138564|gb|AAY85985.1| GyrB [Burkholderia cepacia]
          Length = 610

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 264/614 (42%), Positives = 376/614 (61%), Gaps = 20/614 (3%)

Query: 144 NIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
               M F  G+              +P++VTG    + GTEV F+    IF   +++YD 
Sbjct: 1   KKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++ K  L  +     
Sbjct: 60  LAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFAN 117

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
           G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +K
Sbjct: 118 GEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAK 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E 
Sbjct: 178 KAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLET 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VE
Sbjct: 238 PIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ ++
Sbjct: 298 GDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYN 357

Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           ++KLRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +
Sbjct: 358 LDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDER 417

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           Y+KD+  L  +++  +L     +  ++   IS + L       L    +I+     +D  
Sbjct: 418 YLKDDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIERLSRLYDPA 477

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRI 667
            +E AV+ GV    S+ E   + A  L   L+  A K+E      +        + V+R 
Sbjct: 478 ALE-AVMDGVVIDLSNDESTEASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERT 536

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G     V++     +   +     +N  +        +      + +    S +  + 
Sbjct: 537 HHGNVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLL 596

Query: 728 SIGRKGISMQRYKG 741
           +   + +S QRYKG
Sbjct: 597 ADAERNVSKQRYKG 610


>gi|194339097|gb|ACF49464.1| GyrB [Amycolatopsis palatopharyngis]
          Length = 439

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 194/441 (43%), Positives = 277/441 (62%), Gaps = 17/441 (3%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH+++EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     E+++
Sbjct: 1   LHHLVWEVVDNSVDEAMAGYATRVEVTLLADGGVRVVDDGRGIPVDMHPKEKRPTLEIVL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L + + R+G I+   + +      L+
Sbjct: 61  TVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSAQLDVEVHRDGRIWTQRYDHSKP-GELI 119

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
             G     TGT +TF    +IF    F+ +T+  RL+E++FLN  + I L D+R      
Sbjct: 120 DAGPTS-KTGTSITFWADPEIFETTHFSVETVSRRLQEMAFLNKGLTIVLRDERPEAEPT 178

Query: 221 I---------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
                           T  Y GG+E FV +++  K P+ +S I  +   + + +++AM+W
Sbjct: 179 EEAVDAAGTPANITELTYHYPGGLEDFVKHINGSKDPIHKSVIGFESQGEGVQVEVAMQW 238

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N  Y  +V  F N I   +GGTH  G R+ALTR + SY       K+   ++ GDD REG
Sbjct: 239 NTQYTPSVYTFANTINTPEGGTHEEGFRAALTRVVNSYARDKKLLKEKDTNLTGDDVREG 298

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +++S+K+ +P+F  QTK+KL +SE +S V++  N+ LS W E +P EA+ ++ K + +
Sbjct: 299 LAAIISVKLAEPQFEGQTKQKLGNSEAKSFVQTTTNEWLSDWFERNPSEARAVINKAVSS 358

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+ARDL RRKG LDI  LPGKL DC    P++ EL++VEGDSAGGSAK+GR  
Sbjct: 359 AQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDS 418

Query: 446 ENQAILPLRGKILNVERARFD 466
             QAILP+RGKI+NVE+AR D
Sbjct: 419 MYQAILPIRGKIINVEKARID 439


>gi|297539210|ref|YP_003674979.1| DNA topoisomerase [Methylotenera sp. 301]
 gi|297258557|gb|ADI30402.1| DNA topoisomerase (ATP-hydrolyzing) [Methylotenera sp. 301]
          Length = 661

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 204/658 (31%), Positives = 314/658 (47%), Gaps = 29/658 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    YDADS+++L+GL+ V+ RP MY   T+  +   H++ EV+DNA DE+L G+A  I
Sbjct: 1   MAEKEYDADSVKVLRGLEPVRARPGMYT-RTESPT---HIVQEVIDNAADEALGGHATTI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN----QKSYKVSGGL 120
            VT+  DG+  VSDNGRGIP ++ K E   A E++  +LHAGGKF+      SY+ SGGL
Sbjct: 57  QVTIFKDGAVEVSDNGRGIPVEIPKGETQPAVELVFVQLHAGGKFDKEDENSSYRFSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSV NALS+ L + +KR+G ++ +SF NG    PL  TG     DTGT V   P  
Sbjct: 117 HGVGVSVTNALSTRLDVTVKRDGKVHSLSFENGNCVTPLTETGKCLKKDTGTTVKCWPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F     +   L+H ++  + L   V ++L  + +    E +  Y  G+  ++  L   
Sbjct: 177 KYFDSPKVSLQQLEHLIKSKAVLLRGVSVTLSIEGNDGFEERSWTYVDGLPQYLDELIGE 236

Query: 240 KKPLMQSP--IRIQGSRDNISIDLAMRWNDG---------YHENVLCFTNNIPQKDGGTH 288
           ++          I G   +      +   +G                + N IP   GGTH
Sbjct: 237 REYEDDETPIPIISGEFYHHENTDGISKGEGAIWALSFGSGGGRGESYVNLIPTLSGGTH 296

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G+R+ +   + S++E     ++    V  +D       VL+ K+ DP+F  QTKEKL 
Sbjct: 297 EAGMRNGVFEAVKSFMEHHSMMQRG-VKVSSEDVWNNVCYVLAAKVLDPQFQGQTKEKLT 355

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           + +   +V S V   +  WL ++   AK I   V  ++  R+ + +      ++    I 
Sbjct: 356 NRDAMKMVASAVKPYMETWLSQNVDHAKRISDLVNRSAAARNKSTQK---IEKRKSSGIN 412

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            +P KL DC      ++ELFLVEGDSAGGSAK GR+ E Q++LPLRGK+LN       ++
Sbjct: 413 LMPAKLTDCEAAGTMEAELFLVEGDSAGGSAKMGRNNEFQSLLPLRGKVLNTWEVDAGRI 472

Query: 469 LSSQEIGTLITALGTGIG--QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
             + E+  +  ALG      +D+ D + LRY K+ I++DADVDG+HI+ LLLT   R  P
Sbjct: 473 FGNSEVHDIFVALGIEPHTLKDNPDFSGLRYGKLCILSDADVDGSHIQVLLLTMLLRHAP 532

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G +YI +PPLY I      +     +        +  + E               
Sbjct: 533 KLIERGHVYISQPPLYRIDVPAQGKSKPLRKIYVSDDSEKMSTIEKLKREGIAEEKLGIQ 592

Query: 587 LRNFIDDALKIDKLIKDF---YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
               + +                   +  + +  ++G              A++    
Sbjct: 593 RFKGLGEMNPEQLWETTLCPDTRRLVQVRLPEGEVAGALKMFDMLMAKNESAARKEWI 650



 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 8/100 (8%)

Query: 712 DKIKITGPCSLLDTIFSIGRKGIS-----MQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
            KI ++     + TI  + R+GI+     +QR+KGLGEMN  QLWETTL PDTR L++V+
Sbjct: 562 RKIYVSDDSEKMSTIEKLKREGIAEEKLGIQRFKGLGEMNPEQLWETTLCPDTRRLVQVR 621

Query: 767 ITDASQAD--DLFSRLMG-DEVEPRREFIQENSLPSALDI 803
           + +   A    +F  LM  +E   R+E+I+        D+
Sbjct: 622 LPEGEVAGALKMFDMLMAKNESAARKEWIERRGNDVEADV 661


>gi|47094330|ref|ZP_00232030.1| DNA topoisomerase II (N-terminal region) domain protein [Listeria
           monocytogenes str. 4b H7858]
 gi|47017301|gb|EAL08134.1| DNA topoisomerase II (N-terminal region) domain protein [Listeria
           monocytogenes str. 4b H7858]
          Length = 452

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 202/449 (44%), Positives = 285/449 (63%), Gaps = 12/449 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL++DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHVDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNY+TL  RLRE +FL   + I LID+R          ++ G++ FV Y++  K  
Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418
            + L+ +L E+P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL    
Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+P K+EL+LVEGDSAGGSAKQGR R  
Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRF 443


>gi|241662513|ref|YP_002980873.1| DNA topoisomerase IV subunit B [Ralstonia pickettii 12D]
 gi|240864540|gb|ACS62201.1| DNA topoisomerase (ATP-hydrolyzing) [Ralstonia pickettii 12D]
          Length = 661

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 217/676 (32%), Positives = 320/676 (47%), Gaps = 44/676 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     S Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DN+ DE+L GY
Sbjct: 1   MSK---TSQYSESSIKVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNSADEALGGY 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
             +I VTL+ DGS +V D+ RGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 54  GKLIAVTLHKDGSVSVEDDARGIPVGIHPEEGVPVVEIVYTRLHAGGKFDKGRGGAYAFS 113

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NALS  L++ + R+GN+  ++F  G +  PL    +      +GT V  
Sbjct: 114 GGLHGVGVSVTNALSKRLEVTVWRDGNVSTLAFSGGDVIEPLTTRKAERGEKKSGTRVRA 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P +  F  ++     LQ  LR  + L   V+++L  +++ E  E       G+  ++  
Sbjct: 174 WPDAKYFDSENIPQAELQRLLRSKAVLLPGVKVTLTLEKTGETLEWQYDQ--GLRGYLVE 231

Query: 236 LDRHKKPLMQSPIRIQGSRDN-------------ISIDLAMRWNDGYHENVLCFTNNIPQ 282
                          +G                       + W +        + N IP 
Sbjct: 232 SLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLIPT 291

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH SGLR  L + + S+VE           ++ +D     + VLS K+ DP+F  Q
Sbjct: 292 PAGGTHESGLREGLFQAVKSFVEMHA-LLPKGVKLMSEDVFARASFVLSAKVLDPQFQGQ 350

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            KE+L S +   +V +F    L  WL +H    K + + V+  +  R    RA     +K
Sbjct: 351 IKERLNSRDAVRLVSTFSRPALELWLNQHVDHGKKLAELVIKQAQAR---TRAAQKVEKK 407

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
               +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN   
Sbjct: 408 KGSGVAVLPGKLTDCESDDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTF 520
              D++ ++ E+  +  A+G      +  ++   LRY KI I++DADVDGAHI+ LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDTVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           FF+  P LI  G + + +PPLY +       +     Y  D+  LE              
Sbjct: 528 FFKHFPQLIDRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDG---- 583

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
             +    IS+      +      +  +           + +       N   +  +    
Sbjct: 584 VKEGAWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQDQTINM-MNMLMGKGE 642

Query: 635 ASKLANRLNFIAEKSE 650
           A      L     + E
Sbjct: 643 AGARRTWLEARGNEVE 658



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 19/92 (20%)

Query: 724 DTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRV---------KITDASQ 772
           D +   G ++G   + R+KGLGEM+A QLWETT+NPDTR LL V          I     
Sbjct: 577 DKLRKDGVKEGAWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQDQTIN---- 632

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + + LMG  E   RR +++        DI
Sbjct: 633 ---MMNMLMGKGEAGARRTWLEARGNEVEADI 661


>gi|1360607|emb|CAA92320.1| GyrB [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 391

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 171/391 (43%), Positives = 235/391 (60%), Gaps = 7/391 (1%)

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E DP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 1   AGLPGKLADCQEXDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 60

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           MLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP 
Sbjct: 61  MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 120

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           ++  G +YI +PPLY + +GK  QY+KD+ +++ Y I+ +L         S   ++   L
Sbjct: 121 IVERGHVYIAQPPLYKVKKGKQEQYIKDDXAMDQYQISIALDGATLHTNASAPALAGEAL 180

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFI 645
              + +     K+I      + K  +++ +           D++      + L + LN  
Sbjct: 181 EKLVSEYNATQKMIXRXERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDK 240

Query: 646 AE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
            +     K +   +   N  + +V+    GV   + L+   I     +       ++   
Sbjct: 241 EQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGL 300

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
                 +     +  +      LD +    R+G+S+QRYKGLGEMN  QLWETT++P++R
Sbjct: 301 LEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESR 360

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREF 791
            +LRV + DA  AD LF+ LMGD VEPRR F
Sbjct: 361 RMLRVTVKDAIAADQLFTTLMGDAVEPRRAF 391


>gi|146329798|ref|YP_001209586.1| DNA topoisomerase IV subunit B [Dichelobacter nodosus VCS1703A]
 gi|146233268|gb|ABQ14246.1| DNA topoisomerase IV, B subunit [Dichelobacter nodosus VCS1703A]
          Length = 635

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 215/651 (33%), Positives = 335/651 (51%), Gaps = 22/651 (3%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S+Y A  I++LKGL+ VK+RP M+   TD      H+  EV+DN++DE+L G+A  I VT
Sbjct: 2   SAYQASDIELLKGLEPVKRRPGMF---TDTSRP-DHLAQEVIDNSVDEALAGFAHAIDVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  DGS  V D+GRG+P D H  E IS  E+I+TRLHAGGKF+QK+Y +SGGLHGVGV+V
Sbjct: 58  LYEDGSLAVCDDGRGMPVDEHPGEKISGVELILTRLHAGGKFSQKNYAISGGLHGVGVAV 117

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQD 186
           VNALSS L+++I R+G  Y++   +G +  PL      A N  GT V F  + D F    
Sbjct: 118 VNALSSRLEVQIDRDGFRYQIVCEHGEVIEPLRKIEKIAKNQHGTRVRFWANPDYFEHAQ 177

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L H L+  + L + + +      + +  +     + G+ A+++     +  +   
Sbjct: 178 FSVPWLLHALKSKAVLCAGLTVHFHHLATEKSYQWCY--ENGLVAYLTDALHQETTIPDQ 235

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHEN---VLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           P  +    +N  +D+A  W +           + N IP  DGGTH++GLR+ L   +  +
Sbjct: 236 PFSLHYQDENGELDIAFSWLETVKNTNSINESYANLIPTLDGGTHVNGLRAGLVDALREF 295

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
                        ++ +D  +G   VLSIK+P+P+F+SQTKE+L S    + + + + D 
Sbjct: 296 C-DFRQLLPRGLRLLPEDIWQGCQYVLSIKIPEPQFASQTKERLTSRTCAAWINTIIADR 354

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
              +L +H    + + +  ++ +  R    R +  T RK     A LP KLADC  ++ +
Sbjct: 355 FGLFLNQHLEWGEKLAQLAIERAYARL---REQKKTPRKRHQ-GAPLPSKLADCLSQELQ 410

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ELFLVEGDSAGGSAKQ R R  QAILPLRGKILN      D ++ +QE+  +  A+  
Sbjct: 411 ETELFLVEGDSAGGSAKQARDRNTQAILPLRGKILNTWEIAADDIMMNQEVRDI--AVAI 468

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+  DS D++ LRY KI I+ DAD DG HI TL+     +   +L+  G LY+  PPLY 
Sbjct: 469 GVAPDSDDLSGLRYGKICILADADSDGLHIATLINALMVKHFTALVAAGHLYVAMPPLYR 528

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           +  GK + Y  D++   +++  Q  +        ++           +      +  ++ 
Sbjct: 529 LDAGKKVAYALDDDERNEWIKRQRRTGYTGKINVTRFKGLGEMNPQQLR-----ETTMQP 583

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
                 +   +      + +    ++ +    + L    N          H
Sbjct: 584 HSRRLVQLTFDPEETYPLMDKLLAKKRSADRRAWLEMHGNQARNLDALEEH 634



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 724 DTIFSIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
           + I    R G    I++ R+KGLGEMN  QL ETT+ P +R L+++   D  +   L  +
Sbjct: 546 EWIKRQRRTGYTGKINVTRFKGLGEMNPQQLRETTMQPHSRRLVQLTF-DPEETYPLMDK 604

Query: 780 LMGDE-VEPRREFIQENSLPS-ALD 802
           L+  +    RR +++ +   +  LD
Sbjct: 605 LLAKKRSADRRAWLEMHGNQARNLD 629


>gi|221199539|ref|ZP_03572583.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2M]
 gi|221205561|ref|ZP_03578576.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2]
 gi|221174399|gb|EEE06831.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2]
 gi|221180824|gb|EEE13227.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2M]
          Length = 660

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 224/675 (33%), Positives = 331/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH +EG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADQSVSVEDDGRGIPFGLHPDEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F +G +  PL     G     +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQPAGRGEKKSGTRVRV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L++++S E +      + G+  ++  
Sbjct: 177 WPNPKYFDSANLPLGELQRLLRSKAVLLPGVEVVLVNEKSGERQSWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +Y+ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +++  IS+      +      D  +           + +              +    A
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYETTV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D     
Sbjct: 571 LEAILDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYETTV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|194339099|gb|ACF49465.1| GyrB [Amycolatopsis plumensis]
          Length = 446

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 197/448 (43%), Positives = 281/448 (62%), Gaps = 15/448 (3%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           H++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T+
Sbjct: 1   HLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKENKPTIEVVLTQ 60

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+  SY VSGGLHGVG+SVVNALS+ L   +K  G  +   + N +   PL   
Sbjct: 61  LHAGGKFDSDSYAVSGGLHGVGISVVNALSTKLLAEVKYGGRSWRQEYTNQVP-GPLEDL 119

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-- 220
           G A  +TGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  +     
Sbjct: 120 GPAT-ETGTTMTFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEE 178

Query: 221 -----------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
                          Y GG+E FV +++  K P+  S I        + +++AM+WN G+
Sbjct: 179 DAEGKVARIKEKVYCYPGGLEDFVKHINGSKDPIHPSVISFDAKGTGLEVEVAMQWNTGF 238

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
             +V  F N I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG  ++
Sbjct: 239 TPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAI 298

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  R
Sbjct: 299 VSIKLGEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPTEAKTIINKSISSAQAR 358

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AAR+ARDL RRKG LDI  LPGKL DC    P++ EL++VEGDSAGGSAK+GR    QA
Sbjct: 359 MAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQA 418

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTL 477
           ILP+RGKI+NVE+AR D++L + E+ +L
Sbjct: 419 ILPIRGKIINVEKARIDRVLKNTEVQSL 446


>gi|329911523|ref|ZP_08275558.1| Topoisomerase IV subunit B [Oxalobacteraceae bacterium IMCC9480]
 gi|327545863|gb|EGF30975.1| Topoisomerase IV subunit B [Oxalobacteraceae bacterium IMCC9480]
          Length = 662

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 218/670 (32%), Positives = 317/670 (47%), Gaps = 34/670 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +     S Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY 
Sbjct: 3   TKKTAPSDYSESSIRVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGYC 58

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVSG 118
             ITVT N DGS TV D+GRGIP  +H EEG+   E++ TRLHAGGKF++ S   Y  SG
Sbjct: 59  KHITVTQNADGSVTVDDDGRGIPVGIHPEEGVPTVEIVFTRLHAGGKFDKGSGGAYAFSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFL 176
           GLHGVGVSV NALS+ L++ + REG ++ ++F +G L   +           +GT VT  
Sbjct: 119 GLHGVGVSVTNALSTRLEITVWREGGVHSLAFASGDLIEKISTRPITRDDKKSGTRVTAW 178

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P    F     +   LQ  LR  + L   V+++L++ ++ E +        G+  ++   
Sbjct: 179 PDPKYFDSPAISQSELQRLLRSKAVLLPGVKVTLVNGKTGESQTWQYEQ--GLRGYLVEC 236

Query: 237 DRHKKPLMQSPIRIQGSRDNIS----------IDLAMRWNDGYHENVLCFTNNIPQKDGG 286
                         +G +                  + W +        + N IP   GG
Sbjct: 237 LAQATSSDPLIPLFEGEQYAGKDAEGFAEGEGAAWVVAWTEDGGVVRESYVNLIPTSAGG 296

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH SGLR  L   + S+ E           ++ +D     + VLS K+ DP+F  Q KE+
Sbjct: 297 THESGLREGLFGAVKSFAEMH-SLLPKGVKLLSEDVFARVSFVLSAKVLDPQFQGQIKER 355

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L S +   +V +FV   L  WL EH    K +   V+  +  R  + +      +K    
Sbjct: 356 LNSRDAVKLVSTFVRPSLELWLSEHVEYGKKLADLVIKQAQSRLRSSQK---VEKKKSSG 412

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +A LPGKL DC   D K++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D
Sbjct: 413 VAVLPGKLTDCESNDIKRNEIFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNAWETERD 472

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           ++ ++ EI  +  A+G      +   +   LRY +I I++DADVDG+HI+ LLLT FF+ 
Sbjct: 473 RLFANNEIHDIAVAIGVDPHGKNDTPDLSNLRYGRICILSDADVDGSHIQVLLLTLFFKH 532

Query: 525 MPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
            P LI +G + I +PPL+ +       +     Y  D   L             E     
Sbjct: 533 FPKLIDHGHICIARPPLFRVDAPARGKKPAQKIYALDSGELVAIEDKLRKDGVKEGAWSI 592

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                  ++         ++   +   P     F +       FN    +    +  + +
Sbjct: 593 SRFKGLGEMNAEQLWETTMNPDTRRLLPVAFGEF-DLVSSEERFNMLMGKGEAAARRAWI 651

Query: 639 ANRLNFIAEK 648
               N     
Sbjct: 652 EEHGNEAEAD 661



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 5/85 (5%)

Query: 724 DTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSR 779
           D +   G ++G  S+ R+KGLGEMNA QLWETT+NPDTR LL V     D   +++ F+ 
Sbjct: 578 DKLRKDGVKEGAWSISRFKGLGEMNAEQLWETTMNPDTRRLLPVAFGEFDLVSSEERFNM 637

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +I+E+   +  DI
Sbjct: 638 LMGKGEAAARRAWIEEHGNEAEADI 662


>gi|56475776|ref|YP_157365.1| DNA topoisomerase IV subunit B [Aromatoleum aromaticum EbN1]
 gi|56311819|emb|CAI06464.1| Topoisomerase IV subunit B (EC 5.99.1.-) [Aromatoleum aromaticum
           EbN1]
          Length = 658

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 211/631 (33%), Positives = 308/631 (48%), Gaps = 35/631 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
                YD  S ++LKGL+ V++RP MY   TD  +   H+I EV+DNA DE+L G+A  I
Sbjct: 2   TGKQHYDESSFRVLKGLEPVRERPGMYT-RTDSPA---HIIQEVIDNAADEALGGFAKKI 57

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN----QKSYKVSGGL 120
            VTL++DGS +V+D+GRGIP  LH +E +    +  TRLHAGGKF+      +Y  SGGL
Sbjct: 58  HVTLHLDGSISVADDGRGIPVGLHPDERVPVVVLAFTRLHAGGKFDKRDGNGAYAFSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVGV+V NALS+ +++ ++REG I+ + F + G     + V G  G  +GT V   P +
Sbjct: 118 HGVGVAVTNALSTRVEVEVRREGKIHRIEFSDGGEKVGAITVAGDCGRQSGTRVRVWPDA 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-SPEPREITMFYKGGIEAFVSYLDR 238
             F         L+  LR  + L   V + L  ++        T  Y  G+  ++     
Sbjct: 178 KYFEAPRVPQGELERLLRSKAVLLPGVSVRLDIEQAGGAALTKTWTYPEGLAGYLREQAG 237

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDG-------YHENV--LCFTNNIPQKDGGTHL 289
             + +        G +     D A    +G       +   V    F N IP   GGTH 
Sbjct: 238 DIEAVAP---LYTGEKYAGKDDPAYAPGEGAAWALAWFEHTVPSESFVNLIPTVAGGTHE 294

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SGLR+ +   + S++E      +    +  +D     + VLS ++ DP+F  Q KEKL S
Sbjct: 295 SGLRAGVFDAVKSFIEHHALLPRG-VKLQQEDVCGRMSFVLSARLLDPQFQGQVKEKLNS 353

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            E   +V S + D    WL  H    + I +  +  ++ R  + +      ++    +A 
Sbjct: 354 REAVKLVSSMIRDPFEIWLNNHVEAGRAIAELSIRQALARQKSAQK---VEKRKTSGVAV 410

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL+DC   D   +ELFLVEGDSAGGSAK  R++E QAILPLRGK+ N      D++L
Sbjct: 411 LPGKLSDCESEDLADNELFLVEGDSAGGSAKMARNKETQAILPLRGKVQNSWEIDPDRLL 470

Query: 470 SSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           ++ EI  +  ALG          +   LRY K++IM+DADVDGAHI+TLLLT FFR  P 
Sbjct: 471 ANAEIHDIAVALGVDAHAAGSTPDLSGLRYGKVVIMSDADVDGAHIQTLLLTLFFRHFPE 530

Query: 528 LIHNGFLYIIKPPLYGIT-------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           LI  G +++ +PPLY +        R     Y  D+  L                 +   
Sbjct: 531 LIARGHIHVAQPPLYRVDVPAQGKKRPARRLYALDDGELAAIRDRLEKEGFKPDAIEVGR 590

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
                ++         +D   +   P   + 
Sbjct: 591 FKGLGEMNPDQLRETTMDPATRRVLPVEVRA 621



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD---LFS 778
           D +   G K   I + R+KGLGEMN  QL ETT++P TR +L V++  A   DD   +F+
Sbjct: 574 DRLEKEGFKPDAIEVGRFKGLGEMNPDQLRETTMDPATRRVLPVEVR-ADALDDTLKMFT 632

Query: 779 RLMGD-EVEPRREFIQENSLPSALDI 803
            LMG  E   RR +++        D+
Sbjct: 633 LLMGKGEASGRRAWMEAKGDSVEADV 658


>gi|238028239|ref|YP_002912470.1| DNA topoisomerase IV subunit B [Burkholderia glumae BGR1]
 gi|237877433|gb|ACR29766.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia glumae BGR1]
          Length = 660

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 225/675 (33%), Positives = 333/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L G+
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGH 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH +EG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADQSVSVEDDGRGIPFGLHPDEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + REG   E+ F +G +  PLV    G     +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWREGKCAELGFAHGDVVKPLVTQPAGRGEKKSGTRVRV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P    F   +     LQ  LR  + L   V++ L+ ++S E +      + G+  ++  
Sbjct: 177 WPDGKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVIEKSGERQSWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSKSGDDSFADGEGASWVVAWSEEGSLTRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC  +D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETQDITRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G        +++   LRY KI I++DADVDGAHI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHGPDDNVDLSNLRYGKICILSDADVDGAHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  D+  LE  L            
Sbjct: 528 FKHFPQLIERGNVFVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            D++  IS+      +      D  +           + Q       +      +    A
Sbjct: 584 RDTQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGQLDYDATVS-RMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +   + L     + E
Sbjct: 643 AARRSWLEEKGNEVE 657



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    ++ R+KGLGEM+A QLW+TT+NPDTR L+ V +   D     
Sbjct: 571 LEAILDKLRKDGVRDTQWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGQLDYDATV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 SRMTMLMGKGEAAARRSWLEEKGNEVEADI 660


>gi|167585848|ref|ZP_02378236.1| DNA topoisomerase IV subunit B [Burkholderia ubonensis Bu]
          Length = 660

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 224/675 (33%), Positives = 331/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADHSVSVEDDGRGIPFGLHPEEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F  G +  PL     G     +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFAEGDVVKPLSTQAAGRGEKKSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQAWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +++ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGNVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            D++  IS+      +      D  +           + +              +    A
Sbjct: 584 RDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYESTV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L     + E
Sbjct: 643 AARRGWLEEKGNEVE 657



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D     
Sbjct: 571 LEAILDKLRKDGVRDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYESTV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRGWLEEKGNEVEADI 660


>gi|19909681|dbj|BAB87036.1| DNA gyrase subunit B [Thermotoga sp. KU11]
          Length = 444

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 210/447 (46%), Positives = 287/447 (64%), Gaps = 11/447 (2%)

Query: 47  EVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           EV+DN++DE+L GY D I VTL+ DGS  V DNGRGIP D+H EEG SA EV+ T LHAG
Sbjct: 1   EVVDNSVDEALAGYCDWIRVTLHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAG 60

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF++ SYK+SGGLHGVGVSVVNALS WL++R+ R+G IY   +  G    P+ V G   
Sbjct: 61  GKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET- 119

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           +  GT V F P   IFS  +F+ D L+HRLRE++FL   ++I   D+ + E    T  + 
Sbjct: 120 DKHGTIVRFKPDPLIFSETEFDPDVLEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFD 177

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNN 279
           GGI  +V YL+R KK         +  +       D + +++A ++ D Y E ++ F N 
Sbjct: 178 GGIVEYVKYLNRGKKVFHDVIYMKRTEKVQTKNGEDEVIVEIAFQYTDSYSEEIVSFANT 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   DGGTH++  ++ LTR +  Y +K    K    S  G+D REG T+V+S+ + +P F
Sbjct: 238 IKTVDGGTHVTAFKTMLTRLMNEYGKKHGFLK-GDDSFQGEDVREGLTAVVSVYVKNPEF 296

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL + EV+  +   + D L    + +P   K I+ K++     R+AARRAR++ 
Sbjct: 297 EGQTKSKLGNEEVKEAINRVMRDELKKIFDANPELVKTILSKIMSTKQAREAARRAREMV 356

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK VL   +LPGKLADCS  D +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILN
Sbjct: 357 RRKNVLQNTTLPGKLADCSSTDREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILN 416

Query: 460 VERARFDKMLSSQEIGTLITALGTGIG 486
           VE++  DK+L +++I  +I A+GTGIG
Sbjct: 417 VEKSSLDKLLKNEQISDIIVAVGTGIG 443


>gi|296134959|ref|YP_003642201.1| DNA topoisomerase (ATP-hydrolyzing) [Thiomonas intermedia K12]
 gi|295795081|gb|ADG29871.1| DNA topoisomerase (ATP-hydrolyzing) [Thiomonas intermedia K12]
          Length = 652

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 210/658 (31%), Positives = 316/658 (48%), Gaps = 39/658 (5%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y   SI++LKGL+ V++RP MY   T  ++ L H++ EV+DN+ DE+L GY   I VTL
Sbjct: 8   AYSESSIRVLKGLEPVRQRPGMY---TRTDNPL-HIVQEVIDNSADEALGGYCQHIAVTL 63

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLHGVGV 125
           + DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGGLHGVGV
Sbjct: 64  HTDGSISVEDDGRGIPFGLHPEENAPVVELVFTRLHAGGKFDKLQGGAYSFSGGLHGVGV 123

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSSDIFS 183
           SV NAL++ L++ + R+G +  + F  G +  PL V  +A     +GT V   P +  F 
Sbjct: 124 SVTNALAARLEVTVWRDGQVAHLVFAGGDVIEPLAVRKAARDERRSGTRVRVWPDAKYFD 183

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
                   L H LR  + L   V++ LI +++ +                S        L
Sbjct: 184 SPHLPLAELTHLLRSKAVLLPGVKVDLIQEKTGDTTHWEYARGLRDYLLSSLPAEPYIDL 243

Query: 244 MQSPIRIQGSRDNISID-----LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +       S      +       + + +        + N IP   GGTH +GLR  L +
Sbjct: 244 FEGEHYASASEQESFAEGEGAAWCVGFTEEGAVLRESYVNLIPTPAGGTHEAGLREGLFQ 303

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  ++E     +     ++ +D     + VLS ++ DP+F  Q KEKL S +   +V  
Sbjct: 304 AVKGFIELHN-LQPKGVKLLPEDLFARASFVLSARVLDPQFQGQIKEKLNSRDALRLVGQ 362

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V   L  WL E   + K + + V+  +  R    RA     +K    +A LPGKL DC 
Sbjct: 363 AVRPTLELWLHERVDQGKKLAELVIRQAQSRL---RAAQKVEKKKGSGVAVLPGKLTDCE 419

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RD +++ELFLVEGDSAGGSAK GR +E QA+LPLRGK+LN      D++ ++ EI  + 
Sbjct: 420 SRDTERTELFLVEGDSAGGSAKMGRDKEFQAVLPLRGKVLNSWEIERDRLFANTEIHDIA 479

Query: 479 TALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
            A+G          +   LRY KI I++DADVDG+HI+ LLLT FFR  P LI  G + +
Sbjct: 480 VAIGVDPHGKDDAPDLSNLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIERGHVCV 539

Query: 537 IKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----EEIELFCDSKGVISKN 585
            +PPLY +       +     YV D+  L+                        G +S  
Sbjct: 540 ARPPLYRLDAPARGKKPAQKIYVLDDAELQAAQDKLRKDGLKDGAWQISRFKGLGEMSAE 599

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            L +       ++   +  Y        +   +      + + +    L  +  +++ 
Sbjct: 600 QLWDT-----TLNPDTRRLYRVRPD---DAEALFHQLMGKGEAQARRGLMEEYGDQIE 649



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 6/88 (6%)

Query: 719 PCSLLDTIFSIGRK-GI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
             +  D +   G K G   + R+KGLGEM+A QLW+TTLNPDTR L RV+  DA     L
Sbjct: 568 LQAAQDKLRKDGLKDGAWQISRFKGLGEMSAEQLWDTTLNPDTRRLYRVRPDDAEA---L 624

Query: 777 FSRLMGD-EVEPRREFIQENSLPSALDI 803
           F +LMG  E + RR  ++E      +DI
Sbjct: 625 FHQLMGKGEAQARRGLMEEYGDQIEVDI 652


>gi|161524095|ref|YP_001579107.1| DNA topoisomerase IV subunit B [Burkholderia multivorans ATCC
           17616]
 gi|189351148|ref|YP_001946776.1| DNA topoisomerase IV subunit B [Burkholderia multivorans ATCC
           17616]
 gi|160341524|gb|ABX14610.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia multivorans ATCC
           17616]
 gi|189335170|dbj|BAG44240.1| topoisomerase IV subunit B [Burkholderia multivorans ATCC 17616]
          Length = 660

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 224/675 (33%), Positives = 331/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH +EG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADQSVSVEDDGRGIPFGLHPDEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G I E+ F +G +  PL     G     +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQPAGRGEKKSGTRVRV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L++++S E +      + G+  ++  
Sbjct: 177 WPNPKYFDSANLPLGELQRLLRSKAVLLPGVEVVLVNEKSGERQSWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCEAEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +Y+ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +++  IS+      +      D  +           + +              +    A
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYETTV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D     
Sbjct: 571 LEAILDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYETTV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|221211613|ref|ZP_03584592.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD1]
 gi|221168974|gb|EEE01442.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD1]
          Length = 660

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 223/675 (33%), Positives = 331/675 (49%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  LH +EG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADQSVSVEDDGRGIPFGLHPDEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + R+G + E+ F +G +  PL     G     +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKLAELGFADGDVVKPLSTQPAGRGEKKSGTRVRV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L++++S E +      + G+  ++  
Sbjct: 177 WPNPKYFDSANLPLGELQRLLRSKAVLLPGVEVVLVNEKSGERQSWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDNIS------------IDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R   S                + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +Y+ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            +++  IS+      +      D  +           + +              +    A
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYETTV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D     
Sbjct: 571 LEAILDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYETTV 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
              + LMG  E   RR +++E       DI
Sbjct: 631 ARMTMLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|68138750|gb|AAY86009.1| GyrB [Burkholderia cenocepacia]
          Length = 601

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 263/596 (44%), Positives = 377/596 (63%), Gaps = 8/596 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 10  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 68

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 69  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNE 126

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 127 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 186

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 187 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 246

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 247 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 306

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGA
Sbjct: 307 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGA 366

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +++KD+  L  +++  +L   
Sbjct: 367 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERHLKDDVELNAHMLRLALQGS 426

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I      +D   +E AV+ GV    S++E  
Sbjct: 427 ELVPGENAAAISGDALGELARSYLLSQSVIDRLSWLYDPAALE-AVMDGVVIDLSNEEST 485

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 486 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 545

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLG 743
           +     +N  +        +      + +    S +  + +   + +S QRYKGLG
Sbjct: 546 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKGLG 601


>gi|68138557|gb|AAY85984.1| GyrB [Burkholderia cepacia]
          Length = 607

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 263/611 (43%), Positives = 376/611 (61%), Gaps = 20/611 (3%)

Query: 147 EMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
            M F  G+              +P++VTG    + GTEV F+    IF   +++YD L  
Sbjct: 1   FMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++ K  L  +     G +
Sbjct: 60  RMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEK 117

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K
Sbjct: 118 DGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAK 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
               GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++
Sbjct: 178 VETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPID 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDS
Sbjct: 238 AKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDS 297

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           AGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ ++++K
Sbjct: 298 AGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDK 357

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+K
Sbjct: 358 LRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLK 417

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+  L  +++  +L     +  ++   IS + L       L    +I+     +D   +E
Sbjct: 418 DDVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIERLSRLYDPAALE 477

Query: 615 QAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARG 670
            AV+ GV    S++    + A  L   L+  A K+E      +        + V+R   G
Sbjct: 478 -AVMDGVVIDLSNEASTEASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHG 536

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
                V++     +   +     +N  +        +      + +    S +  + +  
Sbjct: 537 NVRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADA 596

Query: 731 RKGISMQRYKG 741
            + +S QRYKG
Sbjct: 597 ERNVSKQRYKG 607


>gi|19909679|dbj|BAB87035.1| DNA gyrase subunit B [Thermotoga sp. KU10]
          Length = 446

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 211/450 (46%), Positives = 290/450 (64%), Gaps = 11/450 (2%)

Query: 47  EVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           EV+DN++DE+L GY D I VTL+ DGS  V DNGRGIP D+H EEG SA EV+ T LHAG
Sbjct: 1   EVVDNSVDEALAGYCDWIRVTLHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAG 60

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF++ SYK+SGGLHGVGVSVVNALS WL++R+ R+G IY   +  G    P+ V G   
Sbjct: 61  GKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET- 119

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           +  GT V F P   IFS  +F+ D L+HRLRE++FL   ++I   D+ + E    T  + 
Sbjct: 120 DKHGTIVRFKPDPLIFSETEFDPDVLEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFD 177

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNN 279
           GGI  +V YL+R KK         +  +       D + +++A ++ D Y E+++ F N 
Sbjct: 178 GGIVEYVKYLNRGKKVFHDVIYMKRTEKVQTKNGEDEVIVEIAFQYTDSYSEDIVSFANT 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   DGGTH++  ++ LTR +  Y +K    K    S  G+D REG T+V+S+ + +P F
Sbjct: 238 IKTVDGGTHVTAFKTMLTRLMNEYGKKHGFLK-GDDSFQGEDVREGLTAVVSVYVKNPEF 296

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL + EV+  +   + D L    + +P   K I+ K++  +  R+AARRAR++ 
Sbjct: 297 EGQTKSKLGNEEVKEAINRVMRDELKKIFDANPELVKTILSKIMSTTQAREAARRAREMV 356

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK VL   +LPGKLADCS  D +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILN
Sbjct: 357 RRKNVLQNTTLPGKLADCSSTDREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILN 416

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VE++  DK+L +++I  +I A+GTGIG D 
Sbjct: 417 VEKSSLDKLLKNEQISDIIVAVGTGIGDDF 446


>gi|45644630|gb|AAS73018.1| predicted topoisomerase IV subunit B [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 605

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 211/611 (34%), Positives = 310/611 (50%), Gaps = 16/611 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY  DT   +   H+I EVLDNA+DE++ G+   I + L+ +G   VSD+GRG+P D+H 
Sbjct: 1   MYT-DTSCPN---HLIQEVLDNAVDEAIAGHCSNIKIKLHKNGVIEVSDDGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           +  +S  E+I+ +LHAG KF+   Y  SGGLHGVGVSVVNALS  L++ +KR+   +EM 
Sbjct: 57  DHKLSGVELILCKLHAGAKFSGDEYSFSGGLHGVGVSVVNALSENLQVNVKRDSKEHEMH 116

Query: 150 FINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F NG   + L V G  G  +TGT++ F P++  F   D N   L+H L+  + L   + I
Sbjct: 117 FDNGNKKSDLKVVGDVGIRNTGTKIQFKPNAKYFESIDVNNKQLKHLLKAKAVLCPGLTI 176

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
              D++  E  +     + G+++++         L+   I          ++  + W+D 
Sbjct: 177 DFFDEKEKEKIKWFF--EDGLKSYLEEASSETNLLLDESILTSKKSKEHEVEFVINWSDK 234

Query: 269 YHENVL--CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
             +N L   + N IP   GG+HL+G +S L   +  + E           +  DD     
Sbjct: 235 PSKNKLDETYVNLIPTAQGGSHLNGFKSGLLDSMKEFCEIRK-LLPKGLKLNADDVINNA 293

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
             V+S KM +P+F+ QTKE+L S E  S V S   D LS W  +H  E + I +  + ++
Sbjct: 294 IFVISSKMQNPQFAGQTKERLDSKEHMSFVSSSTKDVLSIWFNKHTEEGEKIAELAIISA 353

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R    +A +   RK      +LPGKL+DC+  D  K+ELFLVEGDSAGGSAKQ R R 
Sbjct: 354 QAR---AKASNTVERKKTFKGPALPGKLSDCNSEDLNKTELFLVEGDSAGGSAKQARERS 410

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAI+PLRGKILN      D+++ SQEI  L TA+G   G    DI+ LRY KI I+ DA
Sbjct: 411 FQAIMPLRGKILNTWDLESDEIIKSQEIKNLATAIGVMPGNS--DISSLRYGKICILADA 468

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D DG HI TLL   F R    L+ +G +YI  PPLY +  GK + Y  DE+  E  +   
Sbjct: 469 DSDGLHIATLLCALFLRHFKPLVSDGRIYIAMPPLYRVDCGKEVLYALDEKQKEQIVSEF 528

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
              +        +         + + + + +D   +        +      +  +   + 
Sbjct: 529 KSKKGKPKINIQRFKGLGEMNPSQLRETV-MDPETRQLVRLSISSTDNANAMMDLLLSKK 587

Query: 627 DQEINVSLASK 637
           +         K
Sbjct: 588 NAPARKEWLEK 598



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761
             + +L     +  ++   S        G+  I++QR+KGLGEMN SQL ET ++P+TR 
Sbjct: 511 EVLYALDEKQKEQIVSEFKS------KKGKPKINIQRFKGLGEMNPSQLRETVMDPETRQ 564

Query: 762 LLRVKITDASQADDLFSRLMGDEVEP-RREFIQE 794
           L+R+ I+    A+ +   L+  +  P R+E++++
Sbjct: 565 LVRLSISSTDNANAMMDLLLSKKNAPARKEWLEK 598


>gi|134296546|ref|YP_001120281.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4]
 gi|134139703|gb|ABO55446.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4]
          Length = 660

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 222/675 (32%), Positives = 328/675 (48%), Gaps = 43/675 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    +++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              ITVTL+ D S +V D+GRGIP  +H EE +   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQITVTLHADQSVSVEDDGRGIPFGMHPEERVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + REG I  + F +G +  PL     G     +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWREGKIASLGFADGDVVKPLATQAAGRGEKKSGTRVQV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P+   F   +     LQ  LR  + L   V++ L+++++ E +      + G+  ++  
Sbjct: 177 WPNPKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVNEKTGERQAWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDN------------ISIDLAMRWNDGYHENVLCFTNNIPQK 283
                + L+      +G R                    + W++        + N IP  
Sbjct: 235 EMNGSELLIP---LFEGERFADARSTDDTFAEGEGASWVVAWSEEGSLVRESYVNLIPTP 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHESGLRDGLYQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SF    L  WL +H    K + + V+  +  R  A +      ++ 
Sbjct: 351 KERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQK---VEKRK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 408 SSGVAVLPGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWET 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G         ++   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANNEVHDISVAIGVDPHSPDDTVDLSNLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           F+  P LI  G +Y+ +PPL+ +       +     Y  DE  LE  L            
Sbjct: 528 FKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDG----V 583

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
            D++  IS+      +      D  +           + +              +    A
Sbjct: 584 RDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATV-ARMTMLMGKGEA 642

Query: 636 SKLANRLNFIAEKSE 650
           +     L       E
Sbjct: 643 AARRGWLEEKGNDVE 657



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 723 LDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFS 778
           LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ VK+   D        +
Sbjct: 575 LDKLRKDGVRDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYEATVARMT 634

Query: 779 RLMGD-EVEPRREFIQENSLPSALDI 803
            LMG  E   RR +++E       DI
Sbjct: 635 MLMGKGEAAARRGWLEEKGNDVEADI 660


>gi|194339117|gb|ACF49474.1| GyrB [Amycolatopsis tolypomycina]
          Length = 458

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 203/453 (44%), Positives = 286/453 (63%), Gaps = 15/453 (3%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
            EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T+LHA
Sbjct: 1   QEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKENKPTIEVVLTQLHA 60

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SY VSGGLHGVG+SVVNALS+ L   +K  G  +   + N +   PL   G A
Sbjct: 61  GGKFDSDSYAVSGGLHGVGISVVNALSTKLLAEVKYGGRSWRQEYTNQVP-GPLEDLGPA 119

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----- 220
             +TGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  +        
Sbjct: 120 T-ETGTTMTFWADGDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEEDAE 178

Query: 221 --------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                       Y GG+E FV +++  K P+  S I        + +++AM+WN G+  +
Sbjct: 179 GKVARVKEKVYCYPGGLEDFVKHINGSKDPIHPSVISFDAKGTGLEVEVAMQWNTGFTPS 238

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG  +++SI
Sbjct: 239 VYTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAIVSI 298

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + ++  R AA
Sbjct: 299 KLGEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPTEAKTIINKSISSAQARMAA 358

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    QAILP
Sbjct: 359 RKARDLVRRKGALEIGGLPGKLKDCRSTNPAECELYIVEGDSAGGSAKEGRDSMYQAILP 418

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           +RGKI+NVE+AR D++L + E+ +LITALGTGI
Sbjct: 419 IRGKIINVEKARIDRVLKNTEVQSLITALGTGI 451


>gi|330817903|ref|YP_004361608.1| DNA topoisomerase IV, B subunit [Burkholderia gladioli BSR3]
 gi|327370296|gb|AEA61652.1| DNA topoisomerase IV, B subunit [Burkholderia gladioli BSR3]
          Length = 661

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 221/676 (32%), Positives = 327/676 (48%), Gaps = 44/676 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS     ++Y   SI++LKGL+ VK+RP MY   T  E+ L H+I EV+DNA DE+L GY
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPL-HIIQEVIDNASDEALGGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              I VTL+ D S +V D+GRGIP  +H +EG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 57  GKQIIVTLHADQSVSVEDDGRGIPFGMHPDEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L + + REG   E+ F +G +  PLV    G     +GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWREGKFAELGFAHGDVVKPLVTQNAGRGEKKSGTRVRV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P    F   +     LQ  LR  + L   V++ L+ +++ E +      + G+  ++  
Sbjct: 177 WPDGKYFDSPNLPLGELQRLLRSKAVLLPGVEVVLVTEKTGERQSWKY--EDGLRGYLLD 234

Query: 236 LDRHKKPLMQSPIRIQGSRDN-------------ISIDLAMRWNDGYHENVLCFTNNIPQ 282
                + L+      +G R                     + W++        + N IP 
Sbjct: 235 EMNGSELLIP---LFEGERFADAKTSGDDSFADGEGASWVVAWSEEGSLTRESYVNLIPT 291

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH SGLR  L + + S+VE     +     ++ +D     + VLS K+ DP+F  Q
Sbjct: 292 PAGGTHESGLRDGLFQAVKSFVELHN-LQPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQ 350

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            KE+L S +   +V SF    L  WL +H    K +   V+  +  R  A +      ++
Sbjct: 351 IKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLADLVIKQAQARTRAGQK---VEKR 407

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
               +A LPGKL DC  +D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN   
Sbjct: 408 KSSGVAVLPGKLTDCETQDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 467

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTF 520
              D++ ++ E+  +  A+G         ++   LRY KI I++DADVDGAHI+ LLLT 
Sbjct: 468 TERDRLFANNEVHDISVAIGVDPHAPDDHVDLSNLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           FF+  P LI  G +++ +PPL+ +       +     Y  D+  LE  L           
Sbjct: 528 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDG---- 583

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
             +++  IS+      +      D  +           +         +      +    
Sbjct: 584 VRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLAPIALGGLDYDATVS-RMTMLMGKGE 642

Query: 635 ASKLANRLNFIAEKSE 650
           AS   + L       E
Sbjct: 643 ASARRSWLEEKGNDVE 658



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 15/95 (15%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSL-------LRVKITD 769
             ++LD +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L       L     D
Sbjct: 572 LEAILDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLAPIALGGL-----D 626

Query: 770 ASQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
                   + LMG  E   RR +++E       DI
Sbjct: 627 YDATVSRMTMLMGKGEASARRSWLEEKGNDVEADI 661


>gi|194339059|gb|ACF49445.1| GyrB [Amycolatopsis azurea]
          Length = 446

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 196/447 (43%), Positives = 283/447 (63%), Gaps = 15/447 (3%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           ++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T L
Sbjct: 1   LVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDIHPKEQKPTLEVVLTVL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SY VSGGLHGVGVSVVNALS+ L   +KR G+ +   +I+ I    L   G
Sbjct: 61  HAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQEYIDQIP-GELQDLG 119

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI-- 221
            A  DTGT +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +      
Sbjct: 120 PAE-DTGTVITFWADGSIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEED 178

Query: 222 -----------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                      T  Y GG+E FV +++  K P+  + I  +     + +++AM+WN+G+ 
Sbjct: 179 ASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHPNVISFEAKGTGLEVEVAMQWNNGFT 238

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
            +V  F N I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG  +++
Sbjct: 239 PSVYTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAIV 298

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SIK+ +P+F  QTK KL +SE ++ V+   N+ L+ W E +P E+K I+ K + ++  R 
Sbjct: 299 SIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTESKTIINKSISSAHARM 358

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    QAI
Sbjct: 359 AARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMYQAI 418

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTL 477
           LP+RGKI+NVE+AR D++L + E+ +L
Sbjct: 419 LPIRGKIINVEKARIDRVLKNTEVQSL 445


>gi|171463638|ref|YP_001797751.1| ATP-binding region ATPase domain protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193176|gb|ACB44137.1| ATP-binding region ATPase domain protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 662

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 203/619 (32%), Positives = 304/619 (49%), Gaps = 41/619 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   + S Y   SIQ+LKGL+ V++R  MY   T  ++ L H+I EVLDNA DE+L G+
Sbjct: 1   MATR-KTSEYSESSIQVLKGLEPVRQRSGMY---TRTDNPL-HIIQEVLDNASDEALGGF 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              I VT++ DGS +V D+GRGIP  +H  E +   E++ T+LHAGGKF +    +Y  S
Sbjct: 56  GKQIIVTMHTDGSVSVEDDGRGIPVGMHPTEKLPVVEIVFTQLHAGGKFEKGTGGAYAFS 115

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEVTF 175
           GGLHGVGVSV NALS  L++ + R+G    ++F +G +   L    S   D   GT V  
Sbjct: 116 GGLHGVGVSVTNALSKRLEVTVWRDGQKSTLTFADGKVIEKLKSNPSPKEDKSHGTRVRA 175

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P    F         L   LR  + L   V+++LI ++S + +        G+  +++ 
Sbjct: 176 WPDGKYFDGLAIPIPELIRLLRSKAVLLPGVKVTLIQEKSGDTQTWQYAQ--GLRGYLNE 233

Query: 236 LDRHKKPLMQSPIRIQGSRDNI------------SIDLAMRWNDGYHENVLCFTNNIPQK 283
                    +     +G +                    + W +        + N IP  
Sbjct: 234 AIAQAGHGAEVISPFEGEQYATGSGDNDSFAEGEGAAWVVCWTEDGAPVRESYVNLIPTP 293

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L   +  ++E     +     ++ +D     + +LS K+ DP+F  Q 
Sbjct: 294 AGGTHESGLREGLFNAVKGFIEMHA-LQPKGVKLMPEDVFARASFILSAKVLDPQFQGQI 352

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V  +V   L  WL +H    + +   V+  +  R  A +      +K 
Sbjct: 353 KERLNSRDAVRLVSGYVKSALELWLNQHVDYGRKLADLVIKQAQARTRAGQK---VEKKK 409

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC  +D   +E+FLVEGDSAGGSAK GR++E QAILPLRGK+LN   A
Sbjct: 410 SSGVAVLPGKLTDCESQDISMNEIFLVEGDSAGGSAKMGRNKEYQAILPLRGKVLNTWEA 469

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G      + + +   LRY K+ I++DADVDGAHI+ LLLT F
Sbjct: 470 ERDRLFANNEVHDIAVAIGVDPHGFNDNPDLSNLRYGKVCILSDADVDGAHIQVLLLTLF 529

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----E 570
           ++  P LI  G +YI +PPL+ +       +     Y  D   L+               
Sbjct: 530 YKHFPKLIDLGHVYISRPPLFRVDAPARDKKPAQKIYALDANELQAIEDKLRKDGVKEAA 589

Query: 571 EIELFCDSKGVISKNDLRN 589
                    G +S   L +
Sbjct: 590 WQISRFKGLGEMSAEQLWD 608



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 15/90 (16%)

Query: 724 DTIFSIGRKGI--SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADDLF 777
           D +   G K     + R+KGLGEM+A QLW+TTLNPDTR LL V +     D     + F
Sbjct: 578 DKLRKDGVKEAAWQISRFKGLGEMSAEQLWDTTLNPDTRRLLPVTLGTWTED-----ETF 632

Query: 778 ---SRLMGD-EVEPRREFIQENSLPSALDI 803
                LMG  E   RR++ +E       DI
Sbjct: 633 KTMDMLMGKSESGARRDWFEERGNEVEADI 662


>gi|68138795|gb|AAY86016.1| GyrB [Burkholderia cenocepacia]
          Length = 599

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 262/594 (44%), Positives = 375/594 (63%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 10  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 68

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 69  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNE 126

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 127 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 186

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 187 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 246

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 247 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 306

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGA
Sbjct: 307 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGA 366

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 367 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 426

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I      +D   +E AV+ GV    S++E  
Sbjct: 427 ELVPGENAAAISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEEST 485

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 486 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 545

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 546 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 599


>gi|194339069|gb|ACF49450.1| GyrB [Amycolatopsis eurytherma]
          Length = 457

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/457 (46%), Positives = 289/457 (63%), Gaps = 15/457 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH+I+EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP + H     S  E++ T
Sbjct: 1   HHLIWEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVEEHPVHKKSTLEIVHT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+ +SY VSGGLHGVGVSVVNALS  L + + R+G  +   + +     PL  
Sbjct: 61  VLHAGGKFDSESYAVSGGLHGVGVSVVNALSRALDVEVSRDGKKWRQHYDHSKP-GPLEE 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A   TGT  TF    DIF    +N +T+  RL+E++FLN  + I+L D+R  E    
Sbjct: 120 VGPAE-GTGTSTTFWADPDIFETTTYNMETVSRRLQEMAFLNKGLSITLRDERVTEAETE 178

Query: 222 -------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                           Y GG+E FV +++  K P+  S I      D + +++AM+WN+ 
Sbjct: 179 ADADGKQARVKERVYHYPGGLEDFVKHINGSKDPIHSSIICFDSKGDGLEVEVAMQWNNS 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG T+
Sbjct: 239 FTPSVHTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDENLSGDDVREGLTA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE +S V+S  N+ LS W E +P EAK I+ K L ++  
Sbjct: 299 IISIKLAEPQFEGQTKTKLGNSEAKSFVQSKTNEWLSDWFERNPAEAKTIINKALSSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRARDL RRKG L+I  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RMAARRARDLVRRKGALEIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEGRESRFQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           AILP+RGKI+NVE+AR D++L + E+ +LITALGTGI
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNNEVQSLITALGTGI 455


>gi|68138821|gb|AAY86020.1| GyrB [Burkholderia cenocepacia]
          Length = 606

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 263/610 (43%), Positives = 375/610 (61%), Gaps = 20/610 (3%)

Query: 148 MSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHR 195
           M F  G+              +P++VTG    + GTEV F+    IF   +++YD L  R
Sbjct: 1   MEFHRGVAQDRVIEVVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKR 59

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           +RELSFLN+ V+I L D RS +       + GG++ FV ++++ K  L  +     G +D
Sbjct: 60  MRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEFINKTKSTLHPTVFFANGEKD 117

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
            + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K 
Sbjct: 118 GVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKV 177

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
              GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++A
Sbjct: 178 ETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDA 237

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSA
Sbjct: 238 KIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSA 297

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ +++ KL
Sbjct: 298 GGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKL 357

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RYH+IIIMTDADVDGAHIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD
Sbjct: 358 RYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKD 417

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           +  L  +++  +L     +  ++   IS + L       L    +I+     +D   +E 
Sbjct: 418 DVELNAHMLRLALQGSELVPGENAAAISGDALGELARSYLLSQSVIERLSRLYDPAALE- 476

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGV 671
           AV+ GV    S +E   + A  L   L+  A K+E      +        + V+R   G 
Sbjct: 477 AVMDGVVIDLSSEESTEASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGN 536

Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
               V++     +   +     +N  +        +      + +    S +  + +   
Sbjct: 537 VRVSVIDQEFQHTADYQQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAE 596

Query: 732 KGISMQRYKG 741
           + +S QRYKG
Sbjct: 597 RNVSKQRYKG 606


>gi|68138774|gb|AAY86013.1| GyrB [Burkholderia cenocepacia]
          Length = 604

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 262/594 (44%), Positives = 375/594 (63%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 15  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 73

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 74  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNE 131

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 132 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 191

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 192 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 251

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 252 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 311

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGA
Sbjct: 312 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGA 371

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 372 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 431

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I      +D   +E AV+ GV    S++E  
Sbjct: 432 ELVPGENAAAISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEEST 490

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 491 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 550

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 551 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 604


>gi|68138781|gb|AAY86014.1| GyrB [Burkholderia cenocepacia]
          Length = 604

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 261/594 (43%), Positives = 375/594 (63%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 15  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 73

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 74  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNE 131

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 132 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 191

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 192 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 251

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 252 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 311

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGA
Sbjct: 312 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGA 371

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP ++  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 372 HIRTLLLTFLYRQMPDMVERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 431

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I      +D   +E AV+ GV    S++E  
Sbjct: 432 ELVPGENAAAISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEEST 490

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 491 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 550

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 551 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 604


>gi|163856283|ref|YP_001630581.1| DNA topoisomerase IV subunit B [Bordetella petrii DSM 12804]
 gi|163260011|emb|CAP42312.1| topoisomerase IV subunit B [Bordetella petrii]
          Length = 680

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 203/593 (34%), Positives = 299/593 (50%), Gaps = 23/593 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           DN+    Y   SI++LKGL+ V++RP MY   T  E+ L H++ EV+DNA DE+L GY  
Sbjct: 26  DNLATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPL-HVVQEVIDNAADEALAGYGK 81

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGG 119
            I VTL+ DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGG
Sbjct: 82  QIQVTLHADGSVSVEDDGRGIPVGLHPEEKAPVVELVFTRLHAGGKFDKQGGGAYAFSGG 141

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPS 178
           LHGVGVSV NAL++ L++ + R+G    + F  G +  PL     AG   +GT V   P 
Sbjct: 142 LHGVGVSVTNALATRLEVVVWRDGATSRLVFKGGDVAEPLAPYTEAGRKKSGTRVRVWPD 201

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLD 237
              F         L H LR  + L   V+++L ++++ + +         G  A      
Sbjct: 202 PKYFDSPQIPPGELTHLLRSKAVLLPGVKVTLTNEKTGDTKTWQYEDGLRGYLAEALAGA 261

Query: 238 RHKKPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
               P  +         +           + W +  +     + N IP   GGTH SGLR
Sbjct: 262 ELMVPFFEGQQYAGADHETFADGEGAQWVVAWTEDGNAVRESYVNLIPTPAGGTHESGLR 321

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L   +  + E           ++ +D     + VLS K+ DP+F  Q KE+L S +  
Sbjct: 322 EGLYGAVKGFAELHG-LLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNSRDAV 380

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V  F    L  WL  +    K + +  +  +  R  + +      ++    +A LPGK
Sbjct: 381 RLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARARSAQK---VEKRKSSGVAVLPGK 437

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC   D  ++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ ++ E
Sbjct: 438 LTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFANNE 497

Query: 474 IGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           I  +  A+G      +   +   LRY +I I++DADVDG+HI+ LLLT F+R  P L+  
Sbjct: 498 IHDIAVAIGVDPHGPNDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPRLVEA 557

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           G +Y+ KPPL+ +      +      + + Y ++Q   E  +     +GV   
Sbjct: 558 GNVYVAKPPLFRLDVPAQGK----RPARKIYCLDQGELEAAQDKLRKEGVREG 606



 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 719 PCSLLDTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRV-----KITDAS 771
             +  D +   G R+G  S+ R+KGLGEMN  QLWETT+NPDTR LL V        D +
Sbjct: 591 LEAAQDKLRKEGVREGAWSISRFKGLGEMNPEQLWETTMNPDTRRLLPVGYGSLSPDDTT 650

Query: 772 QADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
               +F  LMG  E   RR +I+E    + LDI
Sbjct: 651 ---RMFDMLMGKGESSQRRAWIEEKGNLAELDI 680


>gi|148762477|dbj|BAF63940.1| DNA topoisomerase IV subunit B [Bacillus licheniformis]
          Length = 406

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 190/402 (47%), Positives = 276/402 (68%), Gaps = 2/402 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH+++E++DN+IDE+L GY   I V +  D S TV DNGRGIP  +H++ G  A EVI
Sbjct: 6   GLHHLVWEIVDNSIDEALAGYCTEINVAIEKDNSITVKDNGRGIPVGIHEKMGRPAVEVI 65

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF+   YKV GGLHGVG SVVNALS+ L + + R+G I+   F  G+    L
Sbjct: 66  MTVLHAGGKFDGSGYKVYGGLHGVGASVVNALSTELDVTVYRDGKIHYQEFERGVPKADL 125

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
            V G     TGT   F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + 
Sbjct: 126 KVVGDTE-VTGTTTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKE 184

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
           R+    Y+GGI+++V +L+R ++ + + P+ I+GS+D I++++A+++ND Y  N+  F N
Sbjct: 185 RKNEYCYEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFAN 244

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTH +G ++ LTR I  Y  ++   K+   ++ G+D REG T+++SIK PDP+
Sbjct: 245 NIHTYEGGTHEAGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQ 304

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +SE R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+L
Sbjct: 305 FEGQTKTKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKAREL 364

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           TRRK  L++++LPGKLADCS +DP  SEL++VEGDSAGGSAK
Sbjct: 365 TRRKSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAK 406


>gi|207743677|ref|YP_002260069.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum
           IPO1609]
 gi|206595076|emb|CAQ62003.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum
           IPO1609]
          Length = 661

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/620 (34%), Positives = 306/620 (49%), Gaps = 44/620 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q   Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L G+
Sbjct: 1   MSKTPQ---YSEASIKVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
             +I VTL+ DGS +V D  RGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 54  GKLIAVTLHKDGSVSVEDEARGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGRGGAYAFS 113

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L++ + R+GN+  ++F  G +   L    +       GT V  
Sbjct: 114 GGLHGVGVSVTNALSTRLEVTVWRDGNVSTLTFSGGDVIEQLTTRKAERGEKKNGTRVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P +  F  ++     LQ  LR  + L   V+++L  ++S E  E       G+  ++  
Sbjct: 174 WPDAKYFDSENIPQAELQRLLRSKAVLLPGVKVALTLEKSGETVEWQYDQ--GLRGYLIE 231

Query: 236 LDRHKKPLMQSPIRIQGSRDN-------------ISIDLAMRWNDGYHENVLCFTNNIPQ 282
                          +G                       + W +        + N IP 
Sbjct: 232 SLAQGSGADPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLIPT 291

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH SGLR  L + + S+VE           ++ +D     + VLS K+ DP+F  Q
Sbjct: 292 PAGGTHESGLREGLFQAVKSFVEMHA-LLPKGVKLMPEDVFARASFVLSAKVLDPQFQGQ 350

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            KE+L S +   +V +F    L  WL +H    K + + V+  +  R    RA     +K
Sbjct: 351 IKERLNSRDAVRLVSTFGRPALELWLNQHVEHGKKLAELVIRQAQAR---TRAAQKVEKK 407

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
               +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN   
Sbjct: 408 KGSGVAVLPGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTF 520
              D++ ++ E+  +  A+G      +  ++   LRY KI I++DADVDGAHI+ LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSL-----S 569
           FF+  P LI  G + + +PPLY +       +     Y  D+  LE              
Sbjct: 528 FFKHFPQLIERGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGLKED 587

Query: 570 EEIELFCDSKGVISKNDLRN 589
                     G +S   L  
Sbjct: 588 SWQISRFKGLGEMSAEQLWE 607



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSR 779
           D +   G K     + R+KGLGEM+A QLWETT+NPDTR LL V I +    Q  ++ + 
Sbjct: 577 DKLRKDGLKEDSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPGPEQTVNMMNM 636

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++        DI
Sbjct: 637 LMGKGEAGARRTWLEARGNEVEADI 661


>gi|83745763|ref|ZP_00942820.1| Topoisomerase IV subunit B [Ralstonia solanacearum UW551]
 gi|207725317|ref|YP_002255713.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum
           MolK2]
 gi|83727453|gb|EAP74574.1| Topoisomerase IV subunit B [Ralstonia solanacearum UW551]
 gi|206590552|emb|CAQ37514.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum
           MolK2]
          Length = 669

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/620 (34%), Positives = 306/620 (49%), Gaps = 44/620 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q   Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L G+
Sbjct: 9   MSKTPQ---YSEASIKVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNAADEALGGF 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
             +I VTL+ DGS +V D  RGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 62  GKLIAVTLHKDGSVSVEDEARGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGRGGAYAFS 121

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L++ + R+GN+  ++F  G +   L    +       GT V  
Sbjct: 122 GGLHGVGVSVTNALSTRLEVTVWRDGNVSTLTFSGGDVIEQLTTRKAERGEKKNGTRVRV 181

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P +  F  ++     LQ  LR  + L   V+++L  ++S E  E       G+  ++  
Sbjct: 182 WPDAKYFDSENIPQAELQRLLRSKAVLLPGVKVALTLEKSGETVEWQYDQ--GLRGYLIE 239

Query: 236 LDRHKKPLMQSPIRIQGSRDN-------------ISIDLAMRWNDGYHENVLCFTNNIPQ 282
                          +G                       + W +        + N IP 
Sbjct: 240 SLAQGSGADPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLIPT 299

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH SGLR  L + + S+VE           ++ +D     + VLS K+ DP+F  Q
Sbjct: 300 PAGGTHESGLREGLFQAVKSFVEMHA-LLPKGVKLMPEDVFARASFVLSAKVLDPQFQGQ 358

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            KE+L S +   +V +F    L  WL +H    K + + V+  +  R    RA     +K
Sbjct: 359 IKERLNSRDAVRLVSTFGRPALELWLNQHVEHGKKLAELVIRQAQAR---TRAAQKVEKK 415

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
               +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN   
Sbjct: 416 KGSGVAVLPGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 475

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTF 520
              D++ ++ E+  +  A+G      +  ++   LRY KI I++DADVDGAHI+ LLLT 
Sbjct: 476 TERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 535

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSL-----S 569
           FF+  P LI  G + + +PPLY +       +     Y  D+  LE              
Sbjct: 536 FFKHFPQLIERGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGLKED 595

Query: 570 EEIELFCDSKGVISKNDLRN 589
                     G +S   L  
Sbjct: 596 SWQISRFKGLGEMSAEQLWE 615



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSR 779
           D +   G K     + R+KGLGEM+A QLWETT+NPDTR LL V I +    Q  ++ + 
Sbjct: 585 DKLRKDGLKEDSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPGPEQTVNMMNM 644

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++        DI
Sbjct: 645 LMGKGEAGARRTWLEARGNEVEADI 669


>gi|68138870|gb|AAY86028.1| GyrB [Burkholderia stabilis]
          Length = 597

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 259/594 (43%), Positives = 372/594 (62%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 8   DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 66

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 67  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTIFFATGEKDGVGVEVAMQWNDSYNE 124

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 125 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 184

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 185 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 244

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 245 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 304

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGA
Sbjct: 305 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGA 364

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 365 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 424

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++  VIS + L       L    +I      +D   +E  +     +  S++   
Sbjct: 425 ELVPGENAAVISGDALGELARSYLLSRSVIDRLSRLYDPAALEAIMDGVAIDL-SNEAST 483

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 484 EASAKALHAALHDEALKNEVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADY 543

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N           +      + ++   S +  + +   + +S QRYKG
Sbjct: 544 QQLVATANTFTGLIGEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKG 597


>gi|68138858|gb|AAY86026.1| GyrB [Burkholderia cenocepacia]
          Length = 599

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 261/594 (43%), Positives = 374/594 (62%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 10  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 68

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV ++++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 69  DLRSGKE--DDFAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGVGVEVAMQWNDSYNE 126

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 127 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 186

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 187 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 246

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 247 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 306

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGA
Sbjct: 307 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGA 366

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 367 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 426

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I+     +D   +E AV+ GV    S +E  
Sbjct: 427 ELVPGENAAAISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSSEEST 485

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 486 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 545

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 546 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 599


>gi|319949427|ref|ZP_08023488.1| DNA gyrase subunit B [Dietzia cinnamea P4]
 gi|319436889|gb|EFV91948.1| DNA gyrase subunit B [Dietzia cinnamea P4]
          Length = 705

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 219/678 (32%), Positives = 328/678 (48%), Gaps = 65/678 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +DN     Y A SI +L+GL+AV+ RP MYIG T G  GLHH+I+EV+DN++DE++ G+A
Sbjct: 8   ADNGGAKEYGASSITVLEGLEAVRMRPGMYIGST-GPRGLHHLIWEVVDNSVDEAMAGHA 66

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             + VTL  DG   V D+GRGIP ++H E G+   +V+MT+LHAGGKF+  SY VSGGLH
Sbjct: 67  TGVKVTLLEDGGVEVIDDGRGIPVEMH-ESGMPTVQVVMTQLHAGGKFDSDSYAVSGGLH 125

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS+ ++++IKR+G +++  F   +    LV  G A   TGT+V F     I
Sbjct: 126 GVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVP-AELVDAGPAE-GTGTKVRFWADPSI 183

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F   ++++D +  RL+E++FLN  + I+L D+R    +   +      E           
Sbjct: 184 FETTEYDFDIVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAIADSEGVGPDSAPGSD 243

Query: 242 PLMQSPIRIQGSRDNI----------------SIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                   +   +  +                       + DG  + V    N       
Sbjct: 244 EGSDLASAVDAEQVFVEGAGDGAEAAEPEKIRERKRTFHYPDGLKDYVKA-INKSKTAIH 302

Query: 286 GTHLSGLRSALTRQITSYVE-KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ-- 342
            T L         ++   ++  S  S+         +  EG T     +       ++  
Sbjct: 303 PTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSLVNKYA 362

Query: 343 -------------------------TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
                                       K+   +     ++ + +       +  +   +
Sbjct: 363 RDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQTKTKLGNTEVKGFVQRQVAEHV 422

Query: 378 IVKKVLDASMVR----------DAARRAR---DLTRRKGVLDIASLPGKLADCSERDPKK 424
                 + +  +           A   AR   ++ RRK   DI  LPGKLADC  +DP K
Sbjct: 423 GHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRKSATDIGGLPGKLADCRSKDPSK 482

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R DK+L + E+  +ITALGTG
Sbjct: 483 SELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLKNAEVQAIITALGTG 542

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           I ++ FDI+KLRYHKI++M DADVDG HI TLLLT  FR M  L+ NG++Y+ +PPLY +
Sbjct: 543 IHEE-FDIDKLRYHKIVLMADADVDGQHIATLLLTLIFRFMKPLVENGYVYLAQPPLYKL 601

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
              K        +   D L+   L  + ++  D    I +      ++     +  +   
Sbjct: 602 KWSKGEPDFAYSDRERDELLKIGLENKRKINVDDG--IQRYKGLGEMNPKELWETTMDPS 659

Query: 605 YPNHDKTFIEQAVISGVF 622
                +  +E A  +   
Sbjct: 660 VRTLRQVTLEDAAAADEL 677



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 59/88 (67%), Gaps = 8/88 (9%)

Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
           D +  IG   ++ I+    +QRYKGLGEMN  +LWETT++P  R+L +V + DA+ AD+L
Sbjct: 618 DELLKIGLENKRKINVDDGIQRYKGLGEMNPKELWETTMDPSVRTLRQVTLEDAAAADEL 677

Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803
           FS LMG++V+ RR FI  N+     LD+
Sbjct: 678 FSILMGEDVDARRNFITRNARDVRFLDV 705


>gi|68138877|gb|AAY86029.1| GyrB [Burkholderia stabilis]
          Length = 604

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 259/594 (43%), Positives = 372/594 (62%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 15  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 73

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 74  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTIFFATGEKDGVGVEVAMQWNDSYNE 131

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 132 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 191

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 192 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 251

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 252 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 311

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGA
Sbjct: 312 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGA 371

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 372 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 431

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++  VIS + L       L    +I      +D   +E  +     +  S++   
Sbjct: 432 ELVPGENAAVISGDALGELARSYLLSRSVIDRLSRLYDPAALEAIMDGVAIDL-SNEAST 490

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 491 EASAKALHAALHDEALKNEVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADY 550

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N           +      + ++   S +  + +   + +S QRYKG
Sbjct: 551 QQLVATANTFTGLIGEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKG 604


>gi|300704691|ref|YP_003746294.1| DNA topoisomerase iv subunit B [Ralstonia solanacearum CFBP2957]
 gi|299072355|emb|CBJ43693.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum CFBP2957]
          Length = 661

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/620 (34%), Positives = 306/620 (49%), Gaps = 44/620 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q   Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L G+
Sbjct: 1   MSKTPQ---YSEASIKVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
             +I VTL+ DGS +V D  RGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 54  GKLIAVTLHKDGSVSVEDEARGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGRGGAYAFS 113

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L++ + R+GN+  ++F  G +   L    +       GT V  
Sbjct: 114 GGLHGVGVSVTNALSTRLEVTVWRDGNVSTLTFSGGDVIEQLTTRKAERGEKKNGTRVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P +  F  ++     LQ  LR  + L   V+++L  ++S E  E       G+  ++  
Sbjct: 174 WPDAKYFDSENIPQAELQRLLRSKAVLLPGVKVALTLEKSGETVEWQYDQ--GLRGYLIE 231

Query: 236 LDRHKKPLMQSPIRIQGSRDN-------------ISIDLAMRWNDGYHENVLCFTNNIPQ 282
                          +G                       + W +        + N IP 
Sbjct: 232 SLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLIPT 291

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH SGLR  L + + S+VE           ++ +D     + VLS K+ DP+F  Q
Sbjct: 292 PAGGTHESGLREGLFQAVKSFVEMHA-LLPKGVKLMPEDVFARASFVLSAKVLDPQFQGQ 350

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            KE+L S +   +V +F    L  WL +H    K + + V+  +  R    RA     +K
Sbjct: 351 IKERLNSRDAVRLVSTFSRPALELWLNQHVEHGKKLAELVIRQAQAR---TRAAQKVEKK 407

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
               +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN   
Sbjct: 408 KGSGVAVLPGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTF 520
              D++ ++ E+  +  A+G      +  ++   LRY KI I++DADVDGAHI+ LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSL-----S 569
           FF+  P LI  G + + +PPLY +       +     Y  D+  LE              
Sbjct: 528 FFKHFPQLIERGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGLKED 587

Query: 570 EEIELFCDSKGVISKNDLRN 589
                     G +S   L  
Sbjct: 588 SWQISRFKGLGEMSAEQLWE 607



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSR 779
           D +   G K     + R+KGLGEM+A QLWETT+NPDTR LL V I +    Q  ++ + 
Sbjct: 577 DKLRKDGLKEDSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVFIGEPGPEQTVNMMNM 636

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++        DI
Sbjct: 637 LMGKGEAGARRTWLEARGNEVEADI 661


>gi|145640543|ref|ZP_01796127.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|145275129|gb|EDK14991.1| DNA gyrase subunit B [Haemophilus influenzae 22.4-21]
          Length = 355

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 181/320 (56%), Positives = 229/320 (71%), Gaps = 4/320 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R+G+++E  +  G   +PL V G     TGT V F PSSD
Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++  F+Y  L  RLRELSFLNS V I LIDKR          Y+GGI+AFV YL+++K
Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DYFHYEGGIQAFVEYLNKNK 236

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR +
Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296

Query: 301 TSYVEKSFGSKKDKRSVIGD 320
            SY+E     KK+K  +   
Sbjct: 297 NSYMENEGMLKKEKWRLQAM 316


>gi|68138863|gb|AAY86027.1| GyrB [Burkholderia cenocepacia]
          Length = 605

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 261/594 (43%), Positives = 374/594 (62%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 16  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 74

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV ++++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 75  DLRSGKE--DDFAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGVGVEVAMQWNDSYNE 132

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 133 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 192

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 193 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 252

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 253 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 312

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGA
Sbjct: 313 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGA 372

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 373 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 432

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I+     +D   +E AV+ GV    S +E  
Sbjct: 433 ELVPGENAAAISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSSEEST 491

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 492 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNARVSVIDQEFQHTADY 551

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 552 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 605


>gi|68138801|gb|AAY86017.1| GyrB [Burkholderia cenocepacia]
          Length = 603

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 262/594 (44%), Positives = 375/594 (63%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 14  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 72

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 73  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNE 130

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 131 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 190

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 191 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 250

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 251 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 310

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGA
Sbjct: 311 PLRGKVLNVEKARYDKLLSSKQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGA 370

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 371 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 430

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I      +D   +E AV+ GV    S++E  
Sbjct: 431 ELVPGENAAAISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEEST 489

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 490 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 549

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 550 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 603


>gi|68138789|gb|AAY86015.1| GyrB [Burkholderia cenocepacia]
          Length = 603

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 262/594 (44%), Positives = 374/594 (62%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 14  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 72

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 73  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNE 130

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 131 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 190

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 191 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 250

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 251 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 310

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS+ I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGA
Sbjct: 311 PLRGKVLNVEKARYDKLLSSEPIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGA 370

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 371 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 430

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I      +D   +E AV+ GV    S++E  
Sbjct: 431 ELVPGENAAAISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEEST 489

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 490 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 549

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 550 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 603


>gi|68138828|gb|AAY86021.1| GyrB [Burkholderia cenocepacia]
 gi|68138836|gb|AAY86022.1| GyrB [Burkholderia cenocepacia]
 gi|68138842|gb|AAY86023.1| GyrB [Burkholderia cenocepacia]
 gi|68138847|gb|AAY86024.1| GyrB [Burkholderia cenocepacia]
 gi|68138853|gb|AAY86025.1| GyrB [Burkholderia cenocepacia]
          Length = 605

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 261/594 (43%), Positives = 374/594 (62%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 16  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 74

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV ++++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 75  DLRSGKE--DDFAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGVGVEVAMQWNDSYNE 132

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 133 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 192

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 193 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 252

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 253 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 312

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGA
Sbjct: 313 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGA 372

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 373 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 432

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I+     +D   +E AV+ GV    S +E  
Sbjct: 433 ELVPGENAAAISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSSEEST 491

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 492 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 551

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 552 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 605


>gi|332868993|ref|ZP_08438552.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6013113]
 gi|332733036|gb|EGJ64238.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6013113]
          Length = 604

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 217/619 (35%), Positives = 335/619 (54%), Gaps = 24/619 (3%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD     +H+  EV+DNA+DE+L G+AD I VT+  DGS +V DNGRG+P D+H 
Sbjct: 1   MY---TDTSRP-NHLAQEVIDNAVDEALAGHADKICVTVYKDGSLSVEDNGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SVVNALS+ +++ ++R+GN+Y+M+
Sbjct: 57  EYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVVNALSTRVEVEVQRQGNLYQMA 116

Query: 150 FINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
           F  G    PL V    +    TGT V F P +  F    F    L+H L+  + L + ++
Sbjct: 117 FEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSPKFALKALKHNLKAKAVLAAGLK 176

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN- 266
           I+ ID+ + E  E     + G+  ++    + ++ L        G  D  + + A+ WN 
Sbjct: 177 ITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPNPAFVSSGQADRAACEFAICWNV 234

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           +G  +    + N IP   GGTH++GLRS +T  +  + E      ++   +  +D  +G 
Sbjct: 235 EGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFCELRNLLPRN-LKLSAEDVWDGV 293

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
             +LS+K  +P+FS QTKE+L S E  ++V +   D  + WL +H   A  + +     S
Sbjct: 294 NYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAFALWLNQHAEIAMQLAEMA--IS 351

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
                 + A+    RK ++   +LPGKLADC  +  ++SELF+VEGDSAGGSAKQ R + 
Sbjct: 352 KAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKN 410

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAI+P+RGKILN      D++L+SQE+  +  A+G   G D  D+++LRY KI I+ DA
Sbjct: 411 FQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVDPGSD--DLSELRYGKICILADA 468

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D DG HI TLL   F +  P+L+  G LY+  PPL+ I  GK + Y  D+E LE  L N 
Sbjct: 469 DSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRIDIGKDVHYALDDEELETILKN- 527

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN-HDKTFIEQAVISGVFNCE 625
                  +  +    I++      ++     +  +             +  + +G+ +  
Sbjct: 528 -------VKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKL 580

Query: 626 SDQEINVSLASKLANRLNF 644
             ++        L  + N 
Sbjct: 581 LAKKRAADRKQWLEQKGNL 599



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 721 SLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             L+TI    +  K   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 519 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 570


>gi|33596500|ref|NP_884143.1| DNA topoisomerase IV subunit B [Bordetella parapertussis 12822]
 gi|33602205|ref|NP_889765.1| DNA topoisomerase IV subunit B [Bordetella bronchiseptica RB50]
 gi|33566269|emb|CAE37180.1| topoisomerase IV subunit B [Bordetella parapertussis]
 gi|33576643|emb|CAE33721.1| topoisomerase IV subunit B [Bordetella bronchiseptica RB50]
          Length = 670

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 198/560 (35%), Positives = 291/560 (51%), Gaps = 19/560 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           DN+    Y   SI++LKGL+ V++RP MY   T  E+ L H++ EV+DNA DE+L GY  
Sbjct: 16  DNLATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPL-HIVQEVIDNAADEALAGYGK 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGG 119
            I VTL+ DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGG
Sbjct: 72  QIQVTLHGDGSISVEDDGRGIPVGLHPEENAPVVELVFTRLHAGGKFDKQGGGAYAFSGG 131

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPS 178
           LHGVGVSV NAL++ L++ + R+G ++ + F  G +   L      G   +GT V   P 
Sbjct: 132 LHGVGVSVTNALATRLEVVVWRDGAVHRLVFAGGDVIEALAPYPEGGRKKSGTRVRVWPD 191

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLD 237
           +  F         L H LR  + L   V++SL+++++ + R         G  A      
Sbjct: 192 AKYFDSPAIPMAELTHLLRSKAVLLPGVKVSLVNEKTGDTRTWQYQEGLRGYLAEALAGA 251

Query: 238 RHKKPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
               P  +         D+          + W +  +     + N IP   GGTH SGLR
Sbjct: 252 ELMIPFFEGQQYAGADHDSFAEGEGAQWVVAWAEDGNVVRESYVNLIPTPAGGTHESGLR 311

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L   +  + E           ++ +D     + VLS K+ DP+F  Q KE+L S +  
Sbjct: 312 EGLFGAVKGFAELH-SLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNSRDAV 370

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V  F    L  WL  +    K + +  +  +  R  + +      ++    +A LPGK
Sbjct: 371 RLVGGFAKSALDLWLHSNVEYGKKLAELAIRQAQARQRSAQK---VEKRKSSGVAVLPGK 427

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC   D  ++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ ++ E
Sbjct: 428 LTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFANNE 487

Query: 474 IGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           I  +  A+G        + +   LRY +I I++DADVDG+HI+ LLLT F+R  P LI  
Sbjct: 488 IHDISVAIGVDPHGPGDEPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPKLIEA 547

Query: 532 GFLYIIKPPLYGITRGKSLQ 551
           G +++ +PPL+ +      +
Sbjct: 548 GNVFVARPPLFRVDVPAQGK 567



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QAD 774
             +  D +   G      S+ R+KGLGEMN  QLWETT+NPDTR LL V   D +     
Sbjct: 581 LEAAQDKLRKEGVRESAWSVSRFKGLGEMNPEQLWETTMNPDTRRLLPVGYGDLTPGDTT 640

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +F  LMG  E   RR +I+E    + LDI
Sbjct: 641 RMFDMLMGKGESSQRRAWIEEKGNLAELDI 670


>gi|293394324|ref|ZP_06638624.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Serratia odorifera DSM
           4582]
 gi|291423302|gb|EFE96531.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Serratia odorifera DSM
           4582]
          Length = 606

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 216/560 (38%), Positives = 301/560 (53%), Gaps = 12/560 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD     +H+  EV+DN++DE+L G+A  I V L+ D S  V D+GRG+P D+H 
Sbjct: 1   MY---TDTSRP-NHLGQEVIDNSVDEALAGHAKRIDVILHADQSLEVVDDGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ +KR+GNIY ++
Sbjct: 57  EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVKRDGNIYSIA 116

Query: 150 FINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F NG     L VTGS    +TGT V F P    F    F+   L H L+  + L   V+I
Sbjct: 117 FENGDKVQDLGVTGSCGKRNTGTSVHFWPDEQFFDSPRFSVSRLSHLLKAKAVLCPGVEI 176

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
             IDK +   +              +       P         G  + +     +   +G
Sbjct: 177 YFIDKVNNTEQRWCYQDGLTDYLMEAVNGLITLPEAPFVGSFAGDIEAVDW-ALLWLPEG 235

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
                  + N IP   GGTH++GLR  L   +  + E      +    +  +D  +    
Sbjct: 236 GELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEFRNILPRG-VKLSAEDIWDRCAY 294

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VLS+KM DP+F+ QTKE+L S +  + V   V D  S WL ++   A+ + +  + ++  
Sbjct: 295 VLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEQLAELAISSAQ- 353

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
                RA     RK +    +LPGKLADC+ +D   +ELFLVEGDSAGGSAKQ R RE Q
Sbjct: 354 --RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLSLTELFLVEGDSAGGSAKQARDREYQ 411

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AI+PL+GKILN      D++L+SQE+  +  ++  GI  DS D+++LRY KI I+ DAD 
Sbjct: 412 AIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGIDPDSDDLSQLRYGKICILADADS 469

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DG HI TLL   F R   SL+  G +Y+  PPLY I  GK + Y  DEE     L     
Sbjct: 470 DGLHIATLLCALFVRHFRSLVKGGHVYVAMPPLYRIDLGKEVYYALDEEEKAGVLEQLKR 529

Query: 569 SEEIELFCDSKGVISKNDLR 588
            +        KG+   N L+
Sbjct: 530 KKGKPNVQRFKGLGEMNPLQ 549



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 48/286 (16%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++       + L   ++S        +K V+ K             D   +D
Sbjct: 325 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRLRAAKKVVRKKLTSGPALPGKLADCTAQD 384

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 385 LS--LTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 432

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y +I             +  +   ++     +  G
Sbjct: 433 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVKG 492

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + G+           ++QR+KGLGEMN  QL E
Sbjct: 493 GHVYVAMPPLYRIDLGKEVYYALDEEEKAGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRE 552

Query: 753 TTLNPDTRSLLRVKITDASQADD---LFSRLMGDE-VEPRREFIQE 794
           TTL+P+TR L+++ + D    D    +   L+  +  E RR ++Q+
Sbjct: 553 TTLDPNTRRLVQLTVND-EDVDQTLAMMDMLLAKKRSEDRRNWLQD 597


>gi|255746897|ref|ZP_05420842.1| topoisomerase IV subunit B [Vibrio cholera CIRS 101]
 gi|262147220|ref|ZP_06028023.1| topoisomerase IV subunit B [Vibrio cholerae INDRE 91/1]
 gi|262168411|ref|ZP_06036108.1| topoisomerase IV subunit B [Vibrio cholerae RC27]
 gi|262189725|ref|ZP_06048086.1| topoisomerase IV subunit B [Vibrio cholerae CT 5369-93]
 gi|255735299|gb|EET90699.1| topoisomerase IV subunit B [Vibrio cholera CIRS 101]
 gi|262023303|gb|EEY42007.1| topoisomerase IV subunit B [Vibrio cholerae RC27]
 gi|262031351|gb|EEY49962.1| topoisomerase IV subunit B [Vibrio cholerae INDRE 91/1]
 gi|262034393|gb|EEY52772.1| topoisomerase IV subunit B [Vibrio cholerae CT 5369-93]
          Length = 602

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 215/561 (38%), Positives = 313/561 (55%), Gaps = 14/561 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD     +H+  EV+DN++DE+L GYA  I V L+ D S  V D+GRG+P D+H 
Sbjct: 1   MY---TDTTRP-NHLGQEVIDNSVDEALAGYASKIQVILHADQSLEVIDDGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EE +S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R+G +YE++
Sbjct: 57  EEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIA 116

Query: 150 FINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F +G     L VTG+ G  +TGT V F P +  F   +F+   L + LR  + L   ++I
Sbjct: 117 FEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEI 176

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA-MRWND 267
              DK      E    Y+ G++ +++   +    L + P   + +    +   A +   +
Sbjct: 177 IFTDK--VNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAATWAVIWLPE 234

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G       + N IP   GGTH++GLR  L   +  + E      +    + G+D  +   
Sbjct: 235 GGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRCA 293

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
            VLSIKM DP+F+ QTKE+L S +  + V   V D  S WL E P  A+ + +  +  + 
Sbjct: 294 YVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCIANAH 353

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R    RA     RK +    +LPGKL DC+ +D  ++ELFLVEGDSAGGSAKQ R RE 
Sbjct: 354 SR---MRASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQARDREF 410

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QA++PLRGKILN      D++L+SQE+  +  ++  GI  DS ++  LRY K+ I+ DAD
Sbjct: 411 QAVMPLRGKILNTWEVSADQVLASQEVHDI--SVALGIDPDSDNLEALRYGKVCILADAD 468

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
            DG HI TLL   F R   +L+  G +Y+  PPLY I  GK + Y  D++  E  L   S
Sbjct: 469 SDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLS 528

Query: 568 LSEEIELFCDSKGVISKNDLR 588
             +        KG+   N L+
Sbjct: 529 QKKAKVNVQRFKGLGEMNPLQ 549



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 325 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQD 384

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 385 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 432

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   +      +   
Sbjct: 433 ASQEVHDISVALGIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 492

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 493 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 552

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 553 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRN 596


>gi|68138652|gb|AAY85997.1| GyrB [Burkholderia cenocepacia]
          Length = 595

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 261/594 (43%), Positives = 375/594 (63%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 6   DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 64

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV ++++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 65  DLRSGKE--DDFAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGVGVEVAMQWNDSYNE 122

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 123 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 182

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 183 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 242

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 243 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 302

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGA
Sbjct: 303 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGA 362

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 363 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 422

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I+     +D   +E AV+ GV    S++E  
Sbjct: 423 ELVPGENAAAISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEEST 481

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 482 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 541

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 542 QQLVTTANTFKGLIGEGAVIKRGERSMVVADFKSAMKWLLADAERNVSKQRYKG 595


>gi|68138646|gb|AAY85996.1| GyrB [Burkholderia cenocepacia]
          Length = 598

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 260/594 (43%), Positives = 375/594 (63%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELS+LN+ V+I L 
Sbjct: 9   DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSYLNNGVRIRLT 67

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV ++++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 68  DLRSGKE--DDFAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGVGVEVAMQWNDSYNE 125

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 126 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 185

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 186 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 245

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 246 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 305

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGA
Sbjct: 306 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGA 365

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 366 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 425

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I+     +D   +E AV+ GV    S++E  
Sbjct: 426 ELVPGENAAAISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEEST 484

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 485 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 544

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +N  +        +      + +    S +  + +   + +S QRYKG
Sbjct: 545 QQLVTTANTFKGLIGEGAVIKRGERSMVVADFKSAMKWLLADAERNVSKQRYKG 598


>gi|68138887|gb|AAY86031.1| GyrB [Burkholderia vietnamiensis]
          Length = 603

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 259/594 (43%), Positives = 370/594 (62%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 14  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 72

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 73  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNE 130

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 131 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 190

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDA
Sbjct: 191 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPTDAKIICGKIVEAARARDA 250

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 251 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 310

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGA
Sbjct: 311 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGA 370

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTFF+RQMP ++  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 371 HIRTLLLTFFYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGS 430

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I      +D   +E  +     +  S +E  
Sbjct: 431 ELVPSENGAAISGDALGELARSYLLSQSVIGRLSRLYDPAALEAIMDGVSIDL-SSEEST 489

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+    K+E      +        + V+R   G     V++     +   
Sbjct: 490 EASARALHAALHDETLKNEVRVVPSYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADY 549

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +   E        +      + +T   S +  + +   + +S QRYKG
Sbjct: 550 QQLVTTAKTFEGLIQAGAVIKRGERSMAVTDFKSAMKWLLADAERNVSKQRYKG 603


>gi|308188123|ref|YP_003932254.1| topoisomerase IV, subunit B [Pantoea vagans C9-1]
 gi|308058633|gb|ADO10805.1| putative topoisomerase IV, subunit B [Pantoea vagans C9-1]
          Length = 606

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 218/561 (38%), Positives = 313/561 (55%), Gaps = 14/561 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD     +H+  EV+DN++DE+L G+A  + V L+ D S  V D+GRG+P D+H 
Sbjct: 1   MY---TDTTRP-NHLGQEVIDNSVDEALGGHAKRVEVILHADQSLEVIDDGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R G IY+M+
Sbjct: 57  EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVTVRRNGEIYDMA 116

Query: 150 FINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F NG     L VTG+ A  +TGT V F P    F    F+   L H L+  + L   V+I
Sbjct: 117 FENGDKVQDLTVTGTVAKRNTGTRVHFWPDESFFDSPRFSVSRLSHLLKAKAVLCPGVEI 176

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA-MRWND 267
              DK +   +      + G+  ++         L + P     + D  ++D A +   +
Sbjct: 177 VFKDKLNNTEQRWCY--EDGLTDYLCEAVNGLPTLPEKPFVGSFAGDVEAVDWALLWLPE 234

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G       + N IP   GGTH++GLR  L   +  + E      +    +  +D  +   
Sbjct: 235 GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCA 293

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
            VLS+KM DP+F+ QTKE+L S +  + V   V D  S WL ++   A+++ +  + ++ 
Sbjct: 294 YVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQNIQTAEMLAELAISSAQ 353

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
                 RA     RK +    +LPGKLADC+ +D  K+ELFLVEGDSAGGSAKQ R RE 
Sbjct: 354 ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNKTELFLVEGDSAGGSAKQARDREY 410

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAI+PL+GKILN      D++L+SQE+  +  ++  GI  DS D+++LRY KI I+ DAD
Sbjct: 411 QAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGIDPDSEDLSQLRYGKICILADAD 468

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
            DG HI TLL   F +   SL+ NG +Y+  PPLY I  GK + Y  DE+  E  L    
Sbjct: 469 SDGLHIATLLCALFVKHFRSLVRNGHVYVAMPPLYRIDLGKEVYYALDEDEKEGVLEQLK 528

Query: 568 LSEEIELFCDSKGVISKNDLR 588
             +        KG+   N L+
Sbjct: 529 RKKGKPNVQRFKGLGEMNPLQ 549



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 11/84 (13%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDAS 771
            LD     G       +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ I   D  
Sbjct: 514 ALDEDEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTISEEDVD 573

Query: 772 QADDLFSRLMGDE-VEPRREFIQE 794
           Q   +   L+  +  E RR ++QE
Sbjct: 574 QTLRMMDMLLAKKRSEDRRNWLQE 597


>gi|187478868|ref|YP_786892.1| DNA topoisomerase IV subunit B [Bordetella avium 197N]
 gi|115423454|emb|CAJ49988.1| topoisomerase IV subunit B [Bordetella avium 197N]
          Length = 670

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 199/564 (35%), Positives = 292/564 (51%), Gaps = 27/564 (4%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           DN+    Y   SI++LKGL+ V++RP MY   T  E+ L H++ EV+DNA DE+L G+  
Sbjct: 16  DNLATPRYTESSIRVLKGLEPVRQRPGMY---TRTENPL-HIVQEVIDNAADEALAGHGK 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGG 119
            I VTL+ DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGG
Sbjct: 72  QIQVTLHADGSISVEDDGRGIPVGLHPEENAPVVELVFTRLHAGGKFDKQGGGAYAFSGG 131

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPS 178
           LHGVGVSV NAL+  L++ + REG ++ + F  G +   L      G   +GT V   P 
Sbjct: 132 LHGVGVSVTNALAKRLEVVVWREGGVHRLVFAGGDVIEALAPYPEGGRKKSGTRVRVWPD 191

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK---------GGI 229
              F   +     L H LR  + L S V++ L+++++ + +                 G 
Sbjct: 192 PKYFDSPNIPMGELTHLLRSKAVLLSGVKVVLVNEKTGDTKTWQYQDGLRGYLSEALAGA 251

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           E  V + +  +          +G      +     W +  +     + N IP   GGTH 
Sbjct: 252 ELMVPFFEGEQYAGADHETFAEGEGAQWVV----AWAEDGNVVRESYVNLIPTPAGGTHE 307

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SGLR  L   + S+ E           ++ +D     + VLS K+ DP+F  Q KE+L S
Sbjct: 308 SGLREGLFGAVKSFAELH-SLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNS 366

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            +   +V  F    L  WL  +    K + +  +  +  R  + +      ++    +A 
Sbjct: 367 RDAVRLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARARSAQK---VEKRKSSGVAV 423

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DC   D  ++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ 
Sbjct: 424 LPGKLTDCEASDASRTEIFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLF 483

Query: 470 SSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           ++ EI  +  A+G          +   LRY +I I++DADVDG+HI+ LLLT FF+  P 
Sbjct: 484 ANNEIHDIAVAIGVDPHGPGDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFFKHFPK 543

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQ 551
           L+  G +Y+ +PPLY +      +
Sbjct: 544 LVEAGHVYVARPPLYRLDVPAQGK 567



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD-- 774
             +  D +   G +   +S+ R+KGLGEMN +QLWETT+NPDTR LL V   D S AD  
Sbjct: 581 LAAAQDKLRKEGVRDNALSVSRFKGLGEMNPAQLWETTMNPDTRRLLPVAYGDLSPADTT 640

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +F  LMG  E   RR +I++    + LDI
Sbjct: 641 RMFDMLMGKGESAQRRAWIEDKGNLAELDI 670


>gi|33592391|ref|NP_880035.1| DNA topoisomerase IV subunit B [Bordetella pertussis Tohama I]
 gi|33572036|emb|CAE41560.1| topoisomerase IV subunit B [Bordetella pertussis Tohama I]
 gi|332381807|gb|AEE66654.1| DNA topoisomerase IV subunit B [Bordetella pertussis CS]
          Length = 653

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 196/558 (35%), Positives = 289/558 (51%), Gaps = 19/558 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y   SI++LKGL+ V++RP MY   T  E+ L H++ EV+DNA DE+L GY   I
Sbjct: 1   MATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPL-HIVQEVIDNAADEALAGYGKQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLH 121
            VTL+ DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGGLH
Sbjct: 57  QVTLHGDGSISVEDDGRGIPVGLHPEENAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLH 116

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           GVGVSV NAL++ L++ + R+G ++ + F  G +   L      G   +GT V   P + 
Sbjct: 117 GVGVSVTNALATRLEVVVWRDGAVHRLVFAGGDVIEALAPYPEGGRKKSGTRVRVWPDAK 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLDRH 239
            F         L H LR  + L   V++SL+++++ + R         G  A        
Sbjct: 177 YFDSPAIPMAELTHLLRSKAVLLPGVKVSLVNEKTGDTRTWQYQEGLRGYLAEALAGAEL 236

Query: 240 KKPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             P  +         D+          + W +  +     + N IP   GGTH SGLR  
Sbjct: 237 MIPFFEGQQYAGADHDSFAEGEGAQWVVAWAEDGNVVRESYVNLIPTPAGGTHESGLREG 296

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L   +  + E           ++ +D     + VLS K+ DP+F  Q KE+L S +   +
Sbjct: 297 LFGAVKGFAELH-SLLPKGVKLLPEDVFTRASFVLSAKVLDPQFQGQIKERLNSRDAVRL 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V  F    L  WL  +    K + +  +  +  R  + +      ++    +A LPGKL 
Sbjct: 356 VGCFAKSALDLWLHSNVEYGKKLAELAIRQAQARQRSAQK---VEKRKSSGVAVLPGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC   D  ++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ ++ EI 
Sbjct: 413 DCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFANNEIH 472

Query: 476 TLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
            +  A+G        + +   LRY +I I++DADVDG+HI+ LLLT F+R  P LI  G 
Sbjct: 473 DISVAIGVDPHGPGDEPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPKLIEAGN 532

Query: 534 LYIIKPPLYGITRGKSLQ 551
           +++ +PPL+ +      +
Sbjct: 533 VFVARPPLFRVDVPAQGK 550



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QAD 774
             +  D +   G      S+ R+KGLGEMN  QLWETT+NPDTR LL V   D +     
Sbjct: 564 LEAAQDKLRKEGVRESAWSVSRFKGLGEMNPEQLWETTMNPDTRRLLPVGYGDLTPGDTT 623

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +F  LMG  E   RR +I+E    + LDI
Sbjct: 624 RMFDMLMGKGESSQRRAWIEEKGNLAELDI 653


>gi|58761285|gb|AAW82357.1| DNA gyrase subunit B [Dehalococcoides sp. FL2]
          Length = 448

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 224/452 (49%), Positives = 308/452 (68%), Gaps = 4/452 (0%)

Query: 45  IYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           +YE++ N++DE++ G  D I V +  DGS +V DNGRGIP D+H    ISA E +MT LH
Sbjct: 1   VYEIVYNSVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHSTTKISALETVMTVLH 60

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AG KF  K+Y+VSGGLHGVG SVVNALS W  ++++R G IY+ S++ G    PL   G 
Sbjct: 61  AGAKFGGKTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG- 119

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               +GT   F+  S IFS  +++++TL  RLRE+++LN  +++ + D++S + R     
Sbjct: 120 VSEGSGTTTIFMADSQIFSTTEYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERTYYF- 178

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            +GGI  FV +L+R+++   + PI I    D+  +++A+++NDGY ++ L F N +   D
Sbjct: 179 -EGGITGFVRHLNRNREVRHRQPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTVD 237

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G RSALTR    Y  KS   K    +++GDD REG  +++S+K+P+P+F  QTK
Sbjct: 238 GGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTK 297

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + E++S VES V + LS +LEEHP + K I++K + A+  R+AAR+ARDL  RK  
Sbjct: 298 GKLGNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSA 357

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD  +LPGKLADCSERD    ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A 
Sbjct: 358 LDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKAS 417

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
            DKML+ +EI  +ITAL  GI  + FD  KLR
Sbjct: 418 PDKMLAHEEIRAIITALAAGI-DNDFDPAKLR 448


>gi|300692061|ref|YP_003753056.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum PSI07]
 gi|299079121|emb|CBJ51788.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum PSI07]
          Length = 661

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 216/622 (34%), Positives = 304/622 (48%), Gaps = 48/622 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q   Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L GY
Sbjct: 1   MSKTPQ---YSEASIKVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNAADEALGGY 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
             +I VTL+ DGS +V D  RGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 54  GKLIQVTLHKDGSVSVEDEARGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGRGGAYAFS 113

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL----VVTGSAGNDTGTEV 173
           GGLHGVGVSV NALS+ L++ + R+G +  ++F  G +   L       G      GT V
Sbjct: 114 GGLHGVGVSVTNALSTRLEVTVWRDGGVSTLTFSGGDVIETLATRRAERGEKK--NGTRV 171

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
              P    F  ++     LQ  LR  + L   V++SL  ++S E  E       G+  ++
Sbjct: 172 RVWPDGKYFDSENIPQAELQRLLRSKAVLLPGVKVSLTIEKSGETLEWQYEQ--GLRGYL 229

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-------------ISIDLAMRWNDGYHENVLCFTNNI 280
                            +G                       + W +        + N I
Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDKLGEEGFAFGEGASWVVAWTEEGAPVRESYVNLI 289

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           P   GGTH SGLR  L + + S+VE           ++ +D     + VLS K+ DP+F 
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHA-LCPKGVKLMSEDVFARASFVLSAKVLDPQFQ 348

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            Q KE+L S +   +V +F    L  WL +H    K + + V+  +  R    RA     
Sbjct: 349 GQIKERLNSRDAVRLVSTFSRPALELWLNQHVEHGKRLAELVIRQAQAR---TRAAQKVE 405

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K    +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN 
Sbjct: 406 KKKGSGVAVLPGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNT 465

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLL 518
                D++ ++ E+  +  A+G      +  ++   LRY KI I++DADVDGAHI+ LLL
Sbjct: 466 WETERDRLFANNEVHDIAVAIGVDPHGPNDSVDLSGLRYGKICILSDADVDGAHIQVLLL 525

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS--- 569
           T FF+  P LI  G + + +PPLY +       +     Y  D+  LE            
Sbjct: 526 TLFFKHFPQLIGRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGLK 585

Query: 570 --EEIELFCDSKGVISKNDLRN 589
                       G +S   L  
Sbjct: 586 EGSWQISRFKGLGEMSAEQLWE 607



 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSR 779
           D +   G K     + R+KGLGEM+A QLWETT+NPDTR LL V I +    Q   + + 
Sbjct: 577 DKLRKDGLKEGSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPGPEQTVHVMNM 636

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++        DI
Sbjct: 637 LMGKGEAGARRTWLEARGNEVEADI 661


>gi|163784002|ref|ZP_02178964.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880724|gb|EDP74266.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 414

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 191/421 (45%), Positives = 282/421 (66%), Gaps = 7/421 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+ I+   Y A+SI +++GL+ V+ RP+MYIGD  GE GLHH+I+E++DNA+DE++ G+
Sbjct: 1   MSEEIK---YSAESIDVVEGLEHVRIRPAMYIGDV-GERGLHHLIWELVDNAVDEAMAGF 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ DGS T+ D+GRGIP D+H + G+ A E++ T+L AGGKF++K+Y+ SGGL
Sbjct: 57  AKNIFVILHEDGSATIEDDGRGIPVDIHPKTGLPAVEMVFTKLGAGGKFSKKAYEYSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG SVVNALSSWL + I R+G IY M F  G    PL V G   +  GT+VTF P  +
Sbjct: 117 HGVGASVVNALSSWLVVEIYRDGKIYRMEFEKGKTIKPLTVVGET-HKRGTKVTFKPDDE 175

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF +  F YDT+  RLREL+FLN  V+     +   +  +    Y  GI+ FV  L++ K
Sbjct: 176 IFEITKFKYDTVSKRLRELAFLNPGVR--FFAEDERKDLKDEFLYHEGIKDFVRVLNQAK 233

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL    I I   +D + +++A ++   Y+E +  F NN+   DGGTH++G RSALT+ +
Sbjct: 234 DPLFNEIIYINDKKDRVIVEVAFQYTKSYNEVIESFVNNVKTVDGGTHVTGFRSALTKAM 293

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
              +      K+ K  + G+D REG T+V+S+K+P+P+F  QTK KL + EV+++VES V
Sbjct: 294 NKTLSGMRLPKELKSGIKGEDLREGLTAVVSVKVPEPQFEGQTKGKLGNQEVKNIVESVV 353

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +D L  + +++   A  I +K ++A++ R+AAR+A++++RRK  L+  SLPGKLADCSE+
Sbjct: 354 SDYLMDYFDKNKDIAVKIAEKAIEAAVAREAARKAKEVSRRKSFLEDTSLPGKLADCSEK 413

Query: 421 D 421
           D
Sbjct: 414 D 414


>gi|194339109|gb|ACF49470.1| GyrB [Amycolatopsis sacchari]
          Length = 466

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 216/469 (46%), Positives = 304/469 (64%), Gaps = 16/469 (3%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH+I EV+DN++DE++ GYA  + VTL  DG   V+D+GRGIP D+H +E     EV+ 
Sbjct: 1   LHHLIQEVVDNSVDEAMAGYATKVEVTLLADGGVRVADDGRGIPVDMHPKEHRPTIEVVH 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  SY VSGGLHGVG+SVVNALS+ L + ++R+G +++  + +      L+
Sbjct: 61  TVLHAGGKFDSDSYAVSGGLHGVGISVVNALSTALDVEVRRDGRLWKQHYDHAKP-GELI 119

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
             G A  DTGT  TF    DIF    +N +T+  RL+E++FLN  + I+L D+R  +   
Sbjct: 120 DAGPAE-DTGTTTTFWADPDIFETTTYNAETVARRLQEMAFLNKGLYITLRDERVTDDET 178

Query: 221 IT-------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
            T               Y GG+E FV +++  K P+  S I      + + +++AM+WN+
Sbjct: 179 ETDVDGQQARVRERVYHYPGGLEDFVKHINGSKDPIHPSVISFDAKGEGLEVEVAMQWNN 238

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y  +V  F N I   +GGTH  G R+ALTR + +Y       K+   ++ G+D REG  
Sbjct: 239 SYTPSVHTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDENLSGEDVREGLA 298

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++SIK+ +P+F  QTK KL +SE +S V+S  N+ L+ W E +P EAK I+ K + ++ 
Sbjct: 299 AIVSIKLAEPQFEGQTKTKLGNSEAKSFVQSKTNEWLADWFERNPGEAKTIINKAIGSAQ 358

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AARRARDL RRKG +DI  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR    
Sbjct: 359 ARMAARRARDLVRRKGAMDIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEGRESRF 418

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           QAILP+RGKI+NVE+AR D++L + E+ +LITALGTGI  D FDI+KLR
Sbjct: 419 QAILPIRGKIINVEKARIDRVLKNNEVQSLITALGTGI-HDDFDISKLR 466


>gi|260771248|ref|ZP_05880175.1| topoisomerase IV subunit B [Vibrio furnissii CIP 102972]
 gi|260613845|gb|EEX39037.1| topoisomerase IV subunit B [Vibrio furnissii CIP 102972]
          Length = 602

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 211/624 (33%), Positives = 311/624 (49%), Gaps = 26/624 (4%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD     +H+  EV+DN++DE+L GYA  + V L+ D S  V D+GRG+P D+H 
Sbjct: 1   MY---TDTTRP-NHLGQEVIDNSVDEALAGYATKVQVILHADQSLEVIDDGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EE +S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R+G +Y+++
Sbjct: 57  EEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVTVRRDGQVYDIA 116

Query: 150 FINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F +G   + L VTG+ G    GT V F P +  F   +F+   L + LR  + L   ++I
Sbjct: 117 FEHGDKVSDLTVTGTCGRRNRGTSVHFWPETKYFDSPNFSVTRLINNLRAKAVLCPGLEI 176

Query: 209 SLIDKRSPEPREITMFY--KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +  DK +            K  +   V       +         +      ++   +   
Sbjct: 177 TFSDKVNNNEYRWFYEDGLKDYLAEGVKGYTLLPEEPFTGEFSAETEAATWAV---IWLP 233

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           +G       + N IP   GGTH++GLR  L   +  + E      +    + G+D  +  
Sbjct: 234 EGGEMITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRC 292

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
             VLS+KM DP+F+ QTKE+L S +  + V   V D  S WL E P  A+ + +  +  +
Sbjct: 293 AYVLSVKMQDPQFAGQTKERLSSRQTAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCIANA 352

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
                  RA     RK V    +LPGKL DCS++D  ++ELFLVEGDSAGGSAKQ R RE
Sbjct: 353 H---RRMRAAKKVVRKKVASGPALPGKLTDCSQQDLSRTELFLVEGDSAGGSAKQARDRE 409

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAI+PLRGKILN      D++L SQE+  +  ++  GI  DS ++  LRY K+ I+ DA
Sbjct: 410 FQAIMPLRGKILNTWEVSGDQVLGSQEVHDI--SVALGIDPDSDNLETLRYGKVCILADA 467

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D DG HI TLL   F R   +L+  G +Y+  PPLY I  GK + Y  D+   +  L   
Sbjct: 468 DSDGLHIATLLCALFTRHFSALVREGHIYVAMPPLYRIDCGKEVFYALDDNEKDAILERL 527

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           +  +                    + +   I        PN  +        +       
Sbjct: 528 AKKKAKVNV----------QRFKGLGEMNPIQLRETTMDPNTRRLVQLTIDDAKATEEMM 577

Query: 627 DQEINVSLASKLANRLNFIAEKSE 650
           D  +    A    N L    + +E
Sbjct: 578 DMLLGKKRADDRRNWLQSNGDLAE 601



 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 119/344 (34%), Gaps = 51/344 (14%)

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI--HNGFLYIIKPPLY--G 543
             F   +    + + +T  DV     R   +     Q P         L   +   +  G
Sbjct: 268 REFCEFRNLLPRGVKLTGEDVFD---RCAYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 324

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        +K V+ K             D   +D
Sbjct: 325 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMRAAKKVVRKKVASGPALPGKLTDCSQQD 384

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 385 LSR--TELFLVEGDSAGGSAKQARDREFQAIMPLRGKILN----------TWEVSGDQVL 432

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   +    S +   
Sbjct: 433 GSQEVHDISVALGIDPDSDNLETLRYGKVCILADADSDGLHIATLLCALFTRHFSALVRE 492

Query: 712 DKIKITGP--------CSLL--------DTIFS-IGRKG--ISMQRYKGLGEMNASQLWE 752
             I +  P          +         D I   + +K   +++QR+KGLGEMN  QL E
Sbjct: 493 GHIYVAMPPLYRIDCGKEVFYALDDNEKDAILERLAKKKAKVNVQRFKGLGEMNPIQLRE 552

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   +++   L+G +  + RR ++Q N
Sbjct: 553 TTMDPNTRRLVQLTIDDAKATEEMMDMLLGKKRADDRRNWLQSN 596


>gi|327484923|gb|AEA79330.1| Topoisomerase IV subunit B [Vibrio cholerae LMA3894-4]
          Length = 602

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 214/561 (38%), Positives = 312/561 (55%), Gaps = 14/561 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD     +H+  EV+DN++DE+L GY   I V L+ D S  V D+GRG+P D+H 
Sbjct: 1   MY---TDTTRP-NHLGQEVIDNSVDEALAGYTSKIQVILHADQSLEVIDDGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EE +S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R+G +YE++
Sbjct: 57  EEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIA 116

Query: 150 FINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F +G     L VTG+ G  +TGT V F P +  F   +F+   L + LR  + L   ++I
Sbjct: 117 FEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEI 176

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA-MRWND 267
              DK      E    Y+ G++ +++   +    L + P   + +    +   A +   +
Sbjct: 177 IFTDK--VNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAATWAVIWLPE 234

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G       + N IP   GGTH++GLR  L   +  + E      +    + G+D  +   
Sbjct: 235 GGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRCA 293

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
            VLSIKM DP+F+ QTKE+L S +  + V   V D  S WL E P  A+ + +  +  + 
Sbjct: 294 YVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCIANAH 353

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R    RA     RK +    +LPGKL DC+ +D  ++ELFLVEGDSAGGSAKQ R RE 
Sbjct: 354 SR---MRASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQARDREF 410

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QA++PLRGKILN      D++L+SQE+  +  ++  GI  DS ++  LRY K+ I+ DAD
Sbjct: 411 QAVMPLRGKILNTWEVSADQVLASQEVHDI--SVALGIDPDSDNLEALRYGKVCILADAD 468

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
            DG HI TLL   F R   +L+  G +Y+  PPLY I  GK + Y  D++  E  L   S
Sbjct: 469 SDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLS 528

Query: 568 LSEEIELFCDSKGVISKNDLR 588
             +        KG+   N L+
Sbjct: 529 QKKAKVNVQRFKGLGEMNPLQ 549



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 325 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQD 384

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 385 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 432

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   +      +   
Sbjct: 433 ASQEVHDISVALGIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 492

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 493 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 552

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 553 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRN 596


>gi|194339087|gb|ACF49459.1| GyrB [Amycolatopsis methanolica]
          Length = 463

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 210/457 (45%), Positives = 288/457 (63%), Gaps = 15/457 (3%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH+I+EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP + H     S  E++ T
Sbjct: 1   HHLIWEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVEEHPVHKKSTLEIVHT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+ +SY VSGGLHGVGVSVVNALS  L + + R+G  +   + +      L  
Sbjct: 61  VLHAGGKFDSESYAVSGGLHGVGVSVVNALSRALDVEVSRDGKKWRQHYDHSKP-GALEE 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A   TGT  TF    DIF    +N +T+  RL+E++FLN  + I+L D+R  E    
Sbjct: 120 VGPAE-GTGTSTTFWADPDIFETTTYNAETVSRRLQEMAFLNKGLSITLRDERVTEAETE 178

Query: 222 -------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                           Y GG+E FV +++  K P+  S I      D + +++AM+WN+ 
Sbjct: 179 ADVDGKQARVKERVYHYPGGLEDFVKHINGSKDPIHSSIICFDAKGDGLEVEVAMQWNNS 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +  +V  F N I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG T+
Sbjct: 239 FTPSVHTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDENLSGDDVREGLTA 298

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK+ +P+F  QTK KL +SE +S V+S  N+ LS W E +P EAK I+ K L ++  
Sbjct: 299 IISIKLAEPQFEGQTKTKLGNSEAKSFVQSKTNEWLSDWFERNPAEAKTIINKALSSAQA 358

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRARDL RRKG L+I  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR    Q
Sbjct: 359 RMAARRARDLVRRKGALEIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEGRESRFQ 418

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           AILP+RGKI+NVE+AR D++L + E+ +LITALGTGI
Sbjct: 419 AILPIRGKIINVEKARIDRVLKNNEVQSLITALGTGI 455


>gi|124267743|ref|YP_001021747.1| DNA topoisomerase IV subunit B [Methylibium petroleiphilum PM1]
 gi|124260518|gb|ABM95512.1| DNA topoisomerase IV subunit B [Methylibium petroleiphilum PM1]
          Length = 659

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 217/670 (32%), Positives = 326/670 (48%), Gaps = 32/670 (4%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    +   Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L G
Sbjct: 1   MATKSSSPGRYGESSIRVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNAADEALAG 56

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKV 116
           +   I VTL+ DGS +V D+GRGIP  LH EE +   E++ TRLHAGGKF++    +Y  
Sbjct: 57  HGQRIAVTLHADGSVSVDDDGRGIPFGLHPEEQVPVVEIVFTRLHAGGKFDKGAGGAYSF 116

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVT 174
           SGGLHGVGVSV NALS+ L++ + REG +  ++F  G +  P+     G+A    GT V 
Sbjct: 117 SGGLHGVGVSVTNALSTRLQVEVFREGKVAALAFSGGDVIEPVASRKAGAADRRQGTSVR 176

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
             P    F   +   + L H LR  + L   V ++L  ++S E +      +GG+  ++ 
Sbjct: 177 VWPDPKYFESAELPRNELVHLLRSKAVLMPGVSVTLTHEKSGEVQTWRY--EGGLRDYLM 234

Query: 235 YLDRHKK--PLMQSPIRIQGSRDNISID-----LAMRWNDGYHENVLCFTNNIPQKDGGT 287
              +     PL +     +        +       + + +        + N IP   GGT
Sbjct: 235 QTLQADPVIPLFEGAHYAEEGETENFAEGEGAAWCVAFTEDGQAVRESYVNLIPTVAGGT 294

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGL+  L + +  ++E           ++ DD     + VLS K+ DP+F  QTKE+L
Sbjct: 295 HESGLKDGLFQAVKGFIELHA-LCPKGVKLMPDDVFSRASFVLSAKVLDPQFQGQTKERL 353

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V ++V      WL +H    + + + V+  +  R  A +      ++    +
Sbjct: 354 NSRDALRLVSTYVKPAFELWLSQHVEHGRKLAELVIRQAQARQRAGQK---VEKRKGSGV 410

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC  RD   +ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 411 AVLPGKLTDCESRDLALNELFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNSWEVERDR 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT FFR  
Sbjct: 471 LFANNEIHDISVAIGVDPHGAADEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHF 530

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           P LI  G + I KPPL+ +       +  +  Y  DE  L   L         E      
Sbjct: 531 PKLIERGHICIAKPPLFRVDAPARGKKPAAKLYALDEGELTAILDKLRKEGARETSWTIS 590

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
                 ++         ++   +   P      ++     G FN    +    S    + 
Sbjct: 591 RFKGLGEMNAEQLWDTTLNPDTRRLLPVSW-GLLDFGQTEGSFNKLMGKGEAASRRELME 649

Query: 640 NRLNFIAEKS 649
              + +    
Sbjct: 650 LHGDAVEVDV 659



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK--ITDASQAD 774
             ++LD +   G +    ++ R+KGLGEMNA QLW+TTLNPDTR LL V   + D  Q +
Sbjct: 570 LTAILDKLRKEGARETSWTISRFKGLGEMNAEQLWDTTLNPDTRRLLPVSWGLLDFGQTE 629

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
             F++LMG  E   RRE ++ +     +D+
Sbjct: 630 GSFNKLMGKGEAASRRELMELHGDAVEVDV 659


>gi|194339115|gb|ACF49473.1| GyrB [Amycolatopsis thermoflava]
          Length = 450

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 206/452 (45%), Positives = 284/452 (62%), Gaps = 15/452 (3%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH+I+EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP + H     S  E++ 
Sbjct: 1   LHHLIWEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVEEHPVHKKSTLEIVH 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+ +SY VSGGLHGVGVSVVNALS  L + + R+G  +   + +     PL 
Sbjct: 61  TVLHAGGKFDSESYAVSGGLHGVGVSVVNALSRALDVEVSRDGKKWRQHYDHSKP-GPLE 119

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
             G A   TGT  TF    DIF    +N +T+  RL+E++FLN  + I+L D+R  E   
Sbjct: 120 EVGPAE-GTGTSTTFWADPDIFETTTYNMETVSRRLQEMAFLNKGLSITLRDERVTEAET 178

Query: 221 I-------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
                            Y GG+E FV +++  K P+  S I      D + +++AM+WN+
Sbjct: 179 EADADGKQARVKERVYHYPGGLEDFVKHINGSKDPIHSSIICFDSKGDGLEVEVAMQWNN 238

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            +  +V  F N I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG T
Sbjct: 239 SFTPSVHTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDENLSGDDVREGLT 298

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++SIK+ +P+F  QTK KL +SE +S V+S  N+ LS W E +P EAK I+ K L ++ 
Sbjct: 299 AIISIKLAEPQFEGQTKTKLGNSEAKSFVQSKTNEWLSDWFERNPAEAKTIINKALSSAQ 358

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AARRARDL RRKG L+I  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR    
Sbjct: 359 ARMAARRARDLVRRKGALEIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEGRESRF 418

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           QAILP+RGKI+NVE+AR D++L + E+ +LIT
Sbjct: 419 QAILPIRGKIINVEKARIDRVLKNNEVQSLIT 450


>gi|126643366|ref|YP_001086350.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii ATCC 17978]
          Length = 605

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 215/608 (35%), Positives = 332/608 (54%), Gaps = 24/608 (3%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD     +H+  EV+DNA+DE+L G+AD I VT+  DGS +V DNGRG+P D+H 
Sbjct: 1   MY---TDTSRP-NHLAQEVIDNAVDEALAGHADKICVTVYKDGSLSVEDNGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E G S  E+I+T+LHAGGKF+  +Y+ SGGLHGVG+SVVNALS+ +++ ++R+GN+Y+M+
Sbjct: 57  EYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVVNALSTRVEVEVQRQGNLYQMA 116

Query: 150 FINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
           F  G    PL V    +    TGT V F P +  F    F    L+H L+  + L + ++
Sbjct: 117 FEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSPKFALKALKHNLKAKAVLAAGLK 176

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN- 266
           I+ ID+ + E  E     + G+  ++    + ++ L        G  D  + + A+ WN 
Sbjct: 177 ITYIDQINDEKIEWQF--ENGLVDYLMDELQDREILPNPAFVSSGQADRAACEFAICWNV 234

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           +G  +    + N IP   GGTH++GLRS +T  +  + E      ++   +  +D  +G 
Sbjct: 235 EGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFCELRNLLPRN-LKLSAEDVWDGV 293

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
             +LS+K  +P+FS QTKE+L S E  ++V +   D  + WL +H   A  + +     S
Sbjct: 294 NYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAFALWLNQHAEIAMQLAEMA--IS 351

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
                 + A+    RK ++   +LPGKLADC  +  ++SELF+VEGDSAGGSAKQ R + 
Sbjct: 352 KAGRRLKAAKK-VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKN 410

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAI+P+RGKILN      D++L+SQE+  +  A+G   G D  D+++LRY KI I+ DA
Sbjct: 411 FQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVDPGSD--DLSELRYGKICILADA 468

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D DG HI TLL   F +  P+L+  G LY+  PPL+ I  GK + Y  D+E LE  L N 
Sbjct: 469 DSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRIDIGKDVHYALDDEELETILKN- 527

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN-HDKTFIEQAVISGVFNCE 625
                  +  +    I++      ++     +  +             +  + +G+ +  
Sbjct: 528 -------VKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKL 580

Query: 626 SDQEINVS 633
             ++    
Sbjct: 581 LAKKRAAD 588



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 721 SLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
             L+TI    +  K   + R+KGLGEMNA QL ETT++P+TR L+++ + DA
Sbjct: 519 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA 570


>gi|253996177|ref|YP_003048241.1| DNA topoisomerase IV subunit B [Methylotenera mobilis JLW8]
 gi|253982856|gb|ACT47714.1| DNA topoisomerase (ATP-hydrolyzing) [Methylotenera mobilis JLW8]
          Length = 661

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 204/601 (33%), Positives = 311/601 (51%), Gaps = 30/601 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    YDADS+++L+GL+ V+ RP MY   TD  +   H++ EV+DNA DE+L G+A  I
Sbjct: 1   MAEKEYDADSVKVLRGLEPVRARPGMYT-RTDSPT---HIVQEVIDNAADEALGGHATNI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN----QKSYKVSGGL 120
            VT+  DG+  V+DNGRGIP ++ K E   A E++  +LHAGGKF+      SY+ SGGL
Sbjct: 57  EVTVYKDGAVEVTDNGRGIPVEIPKGETQPAVELVFVQLHAGGKFDKEDENSSYRFSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVGVSV NALS+ L++++KR G ++ + F NG    PL   G     DTGT V   P  
Sbjct: 117 HGVGVSVTNALSTRLEVKVKRGGKVHGLIFENGHCVEPLAEVGKCLKRDTGTTVKCWPDP 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F     +   L+H ++  + L   V +SL  + +    E T  Y  G+  ++  L   
Sbjct: 177 KYFDSPKVSIQQLEHLIKSKAVLLRGVSVSLSIEGTDGFEERTWTYADGLPQYLDELIGE 236

Query: 240 KKPLMQSPIR--IQGSRDNISIDLAMRWNDG---------YHENVLCFTNNIPQKDGGTH 288
           ++          I G   +      +   +G                + N IP   GGTH
Sbjct: 237 REIADDEVPVPIIAGEFYHQENTDGISKGEGAIWALSFGPGGGRGESYVNLIPTLSGGTH 296

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G+R+ +   + S++E     ++    V  +D       VL+ K+ DP+F  QTKEKL 
Sbjct: 297 EAGMRNGVFEAVKSFMEHHSMMQRG-VKVSSEDVWNNVYYVLAAKVLDPQFQGQTKEKLT 355

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           + +   +V S V   +  WL ++   AK I   V  ++  R+ + +      ++    I 
Sbjct: 356 NRDAMKMVASAVKPMMETWLTQNVDHAKRISDLVNRSAAARNKSTQK---IEKRKTTGIN 412

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            +P KL DC      ++ELFLVEGDSAGGSAK GR+ E Q++LPLRGK+LN       ++
Sbjct: 413 LMPAKLTDCEAAGTMEAELFLVEGDSAGGSAKMGRNNEFQSLLPLRGKVLNTWEVDAGRI 472

Query: 469 LSSQEIGTLITALGTGIG--QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            ++ E+  +  ALG      +D+ D + LRY K+ I++DADVDG+HI+ LLLT   R  P
Sbjct: 473 FANSEVHDIFVALGIEPHTLKDNPDFSGLRYGKLCILSDADVDGSHIQVLLLTMLLRHAP 532

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G +YI +PPLY I      +     + L    ++  + +   +    +  I++  
Sbjct: 533 KLIERGHVYISQPPLYRIDVPAQGK----NKPLRKIYVSDDVEKMSMIEKLKREGIAEEK 588

Query: 587 L 587
           L
Sbjct: 589 L 589



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 8/100 (8%)

Query: 712 DKIKITGPCSLLDTIFSIGRKG-----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
            KI ++     +  I  + R+G     +S+QR+KGLGEMN  QLWETTL PDTR L++V+
Sbjct: 562 RKIYVSDDVEKMSMIEKLKREGIAEEKLSIQRFKGLGEMNPEQLWETTLCPDTRRLIQVR 621

Query: 767 ITDAS--QADDLFSRLMG-DEVEPRREFIQENSLPSALDI 803
           + +    +A  +F  LM  +E   R+E+++        D+
Sbjct: 622 LPEGEVSEALKMFDMLMAKNESASRKEWMERRGNDVEADV 661


>gi|68138588|gb|AAY85988.1| GyrB [Burkholderia multivorans]
 gi|68138597|gb|AAY85989.1| GyrB [Burkholderia multivorans]
 gi|68138612|gb|AAY85990.1| GyrB [Burkholderia multivorans]
 gi|68138617|gb|AAY85991.1| GyrB [Burkholderia multivorans]
 gi|68138623|gb|AAY85992.1| GyrB [Burkholderia multivorans]
          Length = 603

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 257/594 (43%), Positives = 369/594 (62%), Gaps = 8/594 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G   +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 14  DGEEVSPMQVIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 72

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM+WND Y+E
Sbjct: 73  DLRSGKE--DDFAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNE 130

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 131 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLS 190

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDA
Sbjct: 191 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDA 250

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 251 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAIL 310

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGA
Sbjct: 311 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGA 370

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTFF+RQMP +I  G++YI +PPLY +  GK  +Y+KD+  L  +++  +L   
Sbjct: 371 HIRTLLLTFFYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQGS 430

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             L  ++   I+ + L       L    +I+     +D   +E  +     +  S +   
Sbjct: 431 ELLPSENATPITGDALGELARSYLMSQSVIERLSRLYDPAALEAIMDGVSIDL-SSEAST 489

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+    K+E      +        + V+R   G     V++     +   
Sbjct: 490 EASAKALHAALHDDTLKNEVRVVPAYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADY 549

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           +     +   E        +      + +T   + +  + +   + +S QRYKG
Sbjct: 550 QQLVNTAKTFEGLIQAGAVIKRGERSMAVTDFKNAMKWLLADAERNVSKQRYKG 603


>gi|153803593|ref|ZP_01958179.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MZO-3]
 gi|124120868|gb|EAY39611.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MZO-3]
          Length = 519

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 208/531 (39%), Positives = 303/531 (57%), Gaps = 14/531 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD     +H+  EV+DN++DE+L GYA  I V L+ D S  V D+GRG+P D+H 
Sbjct: 1   MY---TDTTRP-NHLGQEVIDNSVDEALAGYASKIQVILHADQSLEVIDDGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EE +S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R+G +YE++
Sbjct: 57  EEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIA 116

Query: 150 FINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F +G     L VTG+ G  +TGT V F P +  F   +F+   L + LR  + L   ++I
Sbjct: 117 FEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEI 176

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA-MRWND 267
              DK      E    Y+ G++ +++   +    L + P   + +    +   A +   +
Sbjct: 177 IFTDK--VNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAATWAVIWLPE 234

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G       + N IP   GGTH++GLR  L   +  + E      +    + G+D  +   
Sbjct: 235 GGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRCA 293

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
            VLSIKM DP+F+ QTKE+L S +  + V   V D  S WL E P  A+ + +  +  + 
Sbjct: 294 YVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCIANAH 353

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R    RA     RK +    +LPGKL DC+ +D  ++ELFLVEGDSAGGSAKQ R RE 
Sbjct: 354 SR---MRASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQARDREF 410

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QA++PLRGKILN      D++L+SQE+  +  ++  GI  DS ++  LRY K+ I+ DAD
Sbjct: 411 QAVMPLRGKILNTWEVSADQVLASQEVHDI--SVALGIDPDSDNLEALRYGKVCILADAD 468

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEES 558
            DG HI TLL   F R   +L+  G +Y+  PPLY I  GK + Y  D++ 
Sbjct: 469 SDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQK 519


>gi|319792862|ref|YP_004154502.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
 gi|315595325|gb|ADU36391.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
          Length = 662

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 219/668 (32%), Positives = 323/668 (48%), Gaps = 34/668 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           + +   S Y   SI++LKGL+ VK+RP MY   T  ++ L H+I EVLDNA DE+L GY 
Sbjct: 7   TTSDSASGYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HIIQEVLDNAADEALAGYG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVSG 118
             I VTL+ D S ++ D+GRGIP  LH EE     E++ TRLHAGGKF++ S   Y  SG
Sbjct: 63  KKIKVTLHADNSVSIEDDGRGIPFGLHPEEKAPVVELVFTRLHAGGKFDKGSGGAYSFSG 122

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFL 176
           GLHGVGVSV NALS  L++   REG+I  ++F  G +   L +    +     GT V   
Sbjct: 123 GLHGVGVSVTNALSKRLEVTSHREGSIARLAFSAGDVIEALEIRKLEAGERKQGTTVRAW 182

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P +  F         L H LR  + L   V ++L  +++ E +     YKGG+  ++   
Sbjct: 183 PDAKYFETAALPMSELTHLLRSKAVLMPGVSVTLTVEKTKETQ--QWLYKGGLSDYLMQT 240

Query: 237 DRHKKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
                 +          ++  +       D  + + +        + N IP   GGTH S
Sbjct: 241 LNGDPVIPLFEGSGHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNLIPTSAGGTHES 300

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR  L   +  ++E           ++ +D     + VLS K+ DP+F  Q KE+L S 
Sbjct: 301 GLRDGLFTAVKGFIELH-SLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSR 359

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           +   +V SFV   L  WL +H    K + +  + A+  R  A +      ++    +A L
Sbjct: 360 DAVRLVSSFVRPALELWLNQHVDYGKKLAELAIKAAQTRQRAGQK---VEKRKGSGVAVL 416

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL DC  +D   +E+FLVEGDSAGGSAK GR +E+QAILPLRGK+LN      D++ +
Sbjct: 417 PGKLTDCESKDISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFA 476

Query: 471 SQEIGTLITALGTGIGQDSFDINK--LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT FFR  P L
Sbjct: 477 NTEIHDISVAVGVDPHGPNDTPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKL 536

Query: 529 IHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           I  G +Y+ KPPL+ +       +  S  Y  DE  L   L             +    I
Sbjct: 537 IETGHVYVAKPPLFRVDAPARGKKPASKVYALDEGELTATLDKLRKDG----VREGAWSI 592

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           S+      +      +  +        +  + +   +     E  + +    A+     +
Sbjct: 593 SRFKGLGEMSAEQLWETTLNPDTRRLMQVQLGRFDFTST-QGEITKLMGKGEAAARRELM 651

Query: 643 NFIAEKSE 650
              A+  +
Sbjct: 652 ELRADDVD 659



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 5/86 (5%)

Query: 723 LDTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFS 778
           LD +   G R+G  S+ R+KGLGEM+A QLWETTLNPDTR L++V++   D +      +
Sbjct: 577 LDKLRKDGVREGAWSISRFKGLGEMSAEQLWETTLNPDTRRLMQVQLGRFDFTSTQGEIT 636

Query: 779 RLMGD-EVEPRREFIQENSLPSALDI 803
           +LMG  E   RRE ++  +    +D+
Sbjct: 637 KLMGKGEAAARRELMELRADDVDIDV 662


>gi|300311161|ref|YP_003775253.1| DNA topoisomerase IV subunit B [Herbaspirillum seropedicae SmR1]
 gi|300073946|gb|ADJ63345.1| DNA topoisomerase IV subunit B protein [Herbaspirillum seropedicae
           SmR1]
          Length = 662

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 212/614 (34%), Positives = 305/614 (49%), Gaps = 34/614 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           +     S Y   SI++LKGL+ VK+RP MY   T  E+ L H++ EV+DNA DE+L GY 
Sbjct: 3   TKKTSPSDYSESSIRVLKGLEPVKQRPGMY---TRTENPL-HILQEVIDNASDEALGGYG 58

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVSG 118
             I VT+N DGS +V D+GRGIP  LH EE +   E++ TRLHAGGKF++ S   Y  SG
Sbjct: 59  KSIIVTMNADGSVSVEDDGRGIPVGLHPEEKVPTVEIVFTRLHAGGKFDKGSGGAYAFSG 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFL 176
           GLHGVGVSV NAL++ L++ + REG ++ ++F  G +   L    +      +GT VT  
Sbjct: 119 GLHGVGVSVTNALATRLEITVWREGGVHTLAFSGGDVIEKLKSRPATRDDKKSGTRVTVW 178

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSY 235
           P +  F         LQ  LR  + L   V+++L + ++ + +         G       
Sbjct: 179 PDAKYFDSPTIPMGELQRLLRSKAVLLPGVKVTLTNGKTGDSQSWQYDQGLRGYLMEQLA 238

Query: 236 LDRHKKPLMQ--SPIRIQGSRDNISID-----LAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                + L+      +  G   +   +       + W +        + N IP  +GGTH
Sbjct: 239 QTGSGETLIPLFEGEQFAGKDADGFAEGEGASWVVAWTEEGAVVRESYVNLIPTSNGGTH 298

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            SGLR  L   + S+ E           ++ +D     + VLS K+ DP+F  Q KE+L 
Sbjct: 299 ESGLREGLFSAVKSFAEMH-SLLPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERLN 357

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           S +   +V  F    L  WL +H    K + + V+  +  R  + +      +K    +A
Sbjct: 358 SRDAVRLVAGFSRPALELWLNQHVDYGKKLAELVIKQAQSRLRSAQK---VEKKKSSGVA 414

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++
Sbjct: 415 VLPGKLTDCESSDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNAWETERDRL 474

Query: 469 LSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            ++ EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT FFR  P
Sbjct: 475 FANNEIHDIAVAIGVDPHGINDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFP 534

Query: 527 SLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----EEIELF 575
            LI NG + + +PPLY +       +     Y  D+  LE                    
Sbjct: 535 KLIENGNICVARPPLYRVDAPARGKKPVQKLYALDDGELEAIEDKLRKDGLKEGAWSISR 594

Query: 576 CDSKGVISKNDLRN 589
               G ++   L  
Sbjct: 595 FKGLGEMNAEQLWE 608



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 723 LDTIFSIGRK-GI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQAD 774
           L+ I    RK G+     S+ R+KGLGEMNA QLWETT+NPDTR LL +   +     ++
Sbjct: 573 LEAIEDKLRKDGLKEGAWSISRFKGLGEMNAEQLWETTMNPDTRRLLPISFGEPGVQTSE 632

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           + F+ LMG  E   RR +I+E+   +  DI
Sbjct: 633 ERFNMLMGKGEAASRRAWIEEHGNEAEADI 662


>gi|237820996|ref|ZP_04596841.1| DNA gyrase subunit B [Streptococcus pneumoniae CCRI 1974M2]
          Length = 444

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 205/440 (46%), Positives = 292/440 (66%), Gaps = 6/440 (1%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F+P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIP 178

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y+
Sbjct: 179 DPKIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+AL
Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  + 
Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
               ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLAD
Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418

Query: 417 CSERDPKKSELFLVEGDSAG 436
           CS  +P ++ELF+VEGDSAG
Sbjct: 419 CSSNNPAETELFIVEGDSAG 438


>gi|194339063|gb|ACF49447.1| GyrB [Amycolatopsis coloradensis]
          Length = 457

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 209/460 (45%), Positives = 291/460 (63%), Gaps = 16/460 (3%)

Query: 48  VLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
           V+DN++DE++ G+A  + VTL  DG   V D+GRGIP D+H +E     EV++T LHAGG
Sbjct: 1   VVDNSVDEAMAGHATKVEVTLLADGGVRVVDDGRGIPVDMHPKEKKPTLEVVLTVLHAGG 60

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SY VSGGLHGVGVSVVNALS  L   +K  G  +   + N +    L   G A  
Sbjct: 61  KFDSDSYAVSGGLHGVGVSVVNALSKTLLAEVKYGGRSWRQEYTNQLP-GELEDLGPAE- 118

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------ 221
           DTGT +TF    DIF    +N++T+  RL+E++FLN  + +SL D+R  +          
Sbjct: 119 DTGTTITFWADDDIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEEDASGQ 178

Query: 222 -------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                  T  Y GG+E FV +++  K P+  S I  +     + +++AM+WN+G+  +V 
Sbjct: 179 AARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTGLEVEVAMQWNNGFTPSVY 238

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +++SIK+
Sbjct: 239 TFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDPNLTGDDVREGLAAIVSIKL 298

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SE ++ V+   N+ L+ W E +P EAK I+ K + +S  R AAR+
Sbjct: 299 SEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSSQARMAARK 358

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARDL RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    QAILP+R
Sbjct: 359 ARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMYQAILPIR 418

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           GKI+NVE+AR D++L + E+ +LITALGTGI  D FDI K
Sbjct: 419 GKIINVEKARIDRVLKNNEVQSLITALGTGI-HDEFDIEK 457


>gi|17545695|ref|NP_519097.1| DNA topoisomerase IV subunit B [Ralstonia solanacearum GMI1000]
 gi|17427989|emb|CAD14678.1| probable dna topoisomerase iv (subunit b) protein [Ralstonia
           solanacearum GMI1000]
          Length = 661

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 217/622 (34%), Positives = 304/622 (48%), Gaps = 48/622 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q   Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L GY
Sbjct: 1   MSKTPQ---YSEASIKVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNAADEALGGY 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              I VTL+ DGS +V D  RGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 54  GKWIQVTLHKDGSVSVEDEARGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGRGGAYAFS 113

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL----VVTGSAGNDTGTEV 173
           GGLHGVGVSV NALS+ L++ + R+G++  ++F  G +   L       G      GT V
Sbjct: 114 GGLHGVGVSVTNALSTRLEVAVWRDGSVSTLAFSGGDVIEALATRRAERGEKK--NGTRV 171

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
              P    F  ++     LQ  LR  + L   V++SL  ++S E  E       G+  ++
Sbjct: 172 RVWPDGKYFDSENIPQAELQRLLRSKAVLLPGVKVSLTIEKSGETLEWQYDQ--GLRGYL 229

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-------------ISIDLAMRWNDGYHENVLCFTNNI 280
                            +G                       + W D        + N I
Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDRPGEEGFAFGEGASWVVAWTDEGSPVRESYVNLI 289

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           P   GGTH SGLR  L + + S+VE           ++ +D     + VLS K+ DP+F 
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHA-LCPKGVKLMPEDVFARASFVLSAKVLDPQFQ 348

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            Q KE+L S +   +V +F    L  WL +H    K + + V+  +  R    RA     
Sbjct: 349 GQIKERLNSRDAVRLVSTFSRPALELWLNQHVEFGKKLAELVIRQAQAR---TRAAQKVE 405

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K    +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN 
Sbjct: 406 KKKGSGVAVLPGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNT 465

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLL 518
                D++ ++ E+  +  A+G      +  ++   LRY KI I++DADVDGAHI+ LLL
Sbjct: 466 WETERDRLFANNEVHDIAVAIGVDPHGPADSVDLSGLRYGKICILSDADVDGAHIQVLLL 525

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS--- 569
           T FF+  P LI  G + + +PPLY +       +     Y  D+  LE            
Sbjct: 526 TLFFKHFPQLIGRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKEGLK 585

Query: 570 --EEIELFCDSKGVISKNDLRN 589
                       G +S   L  
Sbjct: 586 EGSWQISRFKGLGEMSAEQLWE 607



 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSR 779
           D +   G K     + R+KGLGEM+A QLWETT+NPDTR LL V I +  A Q   + + 
Sbjct: 577 DKLRKEGLKEGSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPGAEQTVHVMNM 636

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++        DI
Sbjct: 637 LMGKGEAGARRTWLEARGNEVEADI 661


>gi|303257797|ref|ZP_07343807.1| DNA topoisomerase IV, B subunit [Burkholderiales bacterium 1_1_47]
 gi|330998784|ref|ZP_08322512.1| DNA gyrase, B subunit protein [Parasutterella excrementihominis YIT
           11859]
 gi|302859400|gb|EFL82481.1| DNA topoisomerase IV, B subunit [Burkholderiales bacterium 1_1_47]
 gi|329576281|gb|EGG57797.1| DNA gyrase, B subunit protein [Parasutterella excrementihominis YIT
           11859]
          Length = 659

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 201/570 (35%), Positives = 294/570 (51%), Gaps = 33/570 (5%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS   + + + Y   SI+ILKGL  VK+RP MY   T  +  L H+I EV+DNA DE L 
Sbjct: 1   MSLEQDNKVNDYSEKSIRILKGLQPVKQRPGMY---TLTDCPL-HIIQEVIDNATDEVLA 56

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYK 115
            +A+ I +T + DGS +V DNGRGIP  +H EE +   E++ TRLHAGGKF++    +Y 
Sbjct: 57  NFANRIILTEHADGSISVEDNGRGIPVGIHPEEKVPVVEIVFTRLHAGGKFDKGAGGAYS 116

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEV 173
            SGGLHGVGVSV NALSS L++ + R+G    ++F +G +  PL    +      TGT V
Sbjct: 117 FSGGLHGVGVSVTNALSSRLEVTVWRDGLESSITFEDGFVTVPLNSVKTPRPKKATGTRV 176

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
              P    F       + L   LR  + L    ++   ++   +  E    Y+GG++ ++
Sbjct: 177 RCWPDGKYFDTLTIPKNQLIRLLRSKAVLLPGCEVVYRNE--KDNIEQVWKYEGGLKEYL 234

Query: 234 SYLDRHKKPLMQ----------SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           +        +                 QG      +       D        + N IP  
Sbjct: 235 TEQLDRPPLVQPFEAQGFAGADDDTFSQGEGAGWVVCWT----DEGQLERESYVNLIPTP 290

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH +GLR  + + + S++E           +I DD     + VL+ K+ DP+F  QT
Sbjct: 291 LGGTHEAGLRDGVFQAMRSFMETHG-LGAKGIKMIVDDVFARASFVLNAKVLDPQFQGQT 349

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KEKL+S +   +V SFV   +  WL  H  E + + +  +  +  R     +     ++ 
Sbjct: 350 KEKLISRDALKLVSSFVRPQMEFWLNSHVEEGRKLAEMFIKQAQARQ---HSAQKIEKRK 406

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC+  D  ++ELFLVEGDSAGGSAK+GR +E QAILPLRGK+LN    
Sbjct: 407 GSSVAVLPGKLTDCTSGDISRNELFLVEGDSAGGSAKKGRDKEYQAILPLRGKVLNTWEV 466

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             + +  ++EI  +  ++G    +     +   LRY KI IM DADVDG+HI  LLLT F
Sbjct: 467 DQNLLFGNKEIHDISVSIGVDPHKIGEKPDISNLRYGKICIMADADVDGSHIEVLLLTLF 526

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           ++    L+  G +YI  PPL+ ++     +
Sbjct: 527 YKHFSYLMETGHIYISMPPLFKVSVPNKGK 556



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 14/99 (14%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS-----MQRYKGLGEMNASQLWETTLNPDTRSL 762
                +I       L  T+  + ++  +     + R+KGLGEM+  +L ET+L+P+TR L
Sbjct: 556 KKKERRIYCLNEEELKKTVEKLKKEKFTDAQIVISRFKGLGEMDWEELKETSLDPETRRL 615

Query: 763 LRVKI----TDAS-QADDLFSRLMGD-EVEPRREFIQEN 795
           L VK+     D + +A  +   LMG+ E + R+++I+ +
Sbjct: 616 LPVKVGLPGDDLTGKAMQI---LMGNKEADARKQWIERH 651


>gi|221068512|ref|ZP_03544617.1| DNA topoisomerase (ATP-hydrolyzing) [Comamonas testosteroni KF-1]
 gi|220713535|gb|EED68903.1| DNA topoisomerase (ATP-hydrolyzing) [Comamonas testosteroni KF-1]
          Length = 656

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 207/623 (33%), Positives = 314/623 (50%), Gaps = 33/623 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             ++ Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L GY   I
Sbjct: 4   KPSNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HILQEVIDNAADEALAGYGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLH 121
             T++ DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGGLH
Sbjct: 60  KFTIHADGSYSVEDDGRGIPFGLHPEEKAPVVELVFTRLHAGGKFDKGNGGAYSFSGGLH 119

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT----GSAGNDTGTEVTFLP 177
           GVGVSV NAL++ L++++ R+G +  + F  G +  PL V     G      GT V   P
Sbjct: 120 GVGVSVTNALATRLEVQVHRDGQVATLVFSGGDVIEPLKVRPLQAGERKQ--GTTVRAWP 177

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            +  F         L H LR  + L   V +SLI+++S + +      KGG+  +++   
Sbjct: 178 DAKYFESSALPMGELVHLLRSKAVLMPGVAVSLINEKSRDTQRWQF--KGGLRDYLAQSL 235

Query: 238 RHKKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
             +  +          ++N S          + + +        + N IP   GGTH SG
Sbjct: 236 HGEPVIPLFEGEGFADKNNDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGTHDSG 295

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR  L + + ++++           ++ DD     + VL+ K+ DP+F  Q KE+L S +
Sbjct: 296 LRDGLFQAVKAFIDMH-SLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLNSRD 354

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
              +V  FV   L  WL EH    K + +  + A+  R  A +      ++    +A LP
Sbjct: 355 AVRLVSGFVRPALELWLNEHVDWGKKLAEIAIKAAQTRQKAGQK---VEKRKGSGVAVLP 411

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL DC  +D   +E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ ++
Sbjct: 412 GKLTDCESKDIAVNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVDRDRLFAN 471

Query: 472 QEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT FF+  P LI
Sbjct: 472 NEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFKHFPKLI 531

Query: 530 HNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             G +++  PPL+ +       +     Y  D   L+  +   +        C       
Sbjct: 532 EAGHIHVALPPLFRVDVPARGKKPAIKVYALDAGELDAIIEKCAKDGVPREKCQVSRFKG 591

Query: 584 KNDLRNFIDDALKIDKLIKDFYP 606
             ++         ++   +   P
Sbjct: 592 LGEMNAEQLWETTLNPDTRRLLP 614



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 9/90 (10%)

Query: 723 LDTIFSI-GRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK-IT-DASQAD 774
           LD I     + G+      + R+KGLGEMNA QLWETTLNPDTR LL V+ +  D +Q++
Sbjct: 567 LDAIIEKCAKDGVPREKCQVSRFKGLGEMNAEQLWETTLNPDTRRLLPVQFMNMDFAQSE 626

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            + ++LMG  E   RRE ++ +     +DI
Sbjct: 627 AVVTKLMGKGEAAARRELMELHGDAVEVDI 656


>gi|237746615|ref|ZP_04577095.1| DNA topoisomerase IV subunit B [Oxalobacter formigenes HOxBLS]
 gi|229377966|gb|EEO28057.1| DNA topoisomerase IV subunit B [Oxalobacter formigenes HOxBLS]
          Length = 659

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 207/566 (36%), Positives = 295/566 (52%), Gaps = 25/566 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++    S Y  +SI +LKGL+ V++RP MY   T  E+ L H++ EV+DNA DE++ GY
Sbjct: 1   MAEK--KSIYSEESITVLKGLEPVRQRPGMY---TRTENPL-HIVTEVIDNASDEAIGGY 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF---NQKSYKVS 117
              I V LN DGS +V D+GRGIP  LH EE +   E++ TRLHAGGKF    + +Y  S
Sbjct: 55  CKNIQVCLNADGSVSVEDDGRGIPVGLHPEEKVPTVEIVFTRLHAGGKFAKGGESAYAFS 114

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTF 175
           GGLHGVGVSV NALS  +++ + RE  ++ ++F +G +  PL     +     +GT+VT 
Sbjct: 115 GGLHGVGVSVTNALSKRIEVTVWREKQVHHIAFTDGDVSEPLTSRPLSRGEKKSGTKVTV 174

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVS 234
            P +  F         L+H LR  + L   V + L + ++ E           G  +   
Sbjct: 175 WPDAKYFDSMTIPLPELKHLLRSKAILLPGVHVELHNAKTGETETWQYEDGLRGYLSQAL 234

Query: 235 YLDRHKKPLMQ---SPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            L    + ++          G  +           + W          F N IP   GGT
Sbjct: 235 ELASGDETVIPLFAGEHYADGENEGFAGGEGAAWIVAWTADGPLVRESFVNLIPTTAGGT 294

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGLR  L   + S+ +           ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 295 HESGLRDGLFNAVRSFTDIH-SLLPKGVRLLPEDVFARVSFVLSAKVLDPQFQGQIKERL 353

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V  FV      WL ++    + + + V+  +  R    +      +K    +
Sbjct: 354 NSRDAVRLVSHFVRPAFELWLHQNVEYGRKLAELVIRQAQSRMRQLQK---VEKKKSSAV 410

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC  RD  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN      D+
Sbjct: 411 AVLPGKLTDCESRDISRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWETEKDR 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++QEI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT FFR  
Sbjct: 471 LFANQEIHDIAVAVGVDPHGANDSPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHF 530

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ 551
           P LI NG +Y+ +PPLY I      +
Sbjct: 531 PRLIENGNIYVARPPLYRIDAPARGR 556



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 9/92 (9%)

Query: 719 PCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK----ITDASQ 772
              +LD + S G K   + + R+KGLGEMNA QLWETTLNPDTR LL +       D  +
Sbjct: 570 LAGILDKLKSEGVKDSALGISRFKGLGEMNAEQLWETTLNPDTRRLLPITFGAFTRD--E 627

Query: 773 ADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           + + F  LMG  E   RR +++E+   +  DI
Sbjct: 628 STERFQMLMGKGEAAARRNWMEEHGNEAEADI 659


>gi|299066932|emb|CBJ38127.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum CMR15]
          Length = 661

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 217/622 (34%), Positives = 305/622 (49%), Gaps = 48/622 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   Q   Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L GY
Sbjct: 1   MSKTPQ---YSEASIKVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNAADEALGGY 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              I VTL+ DGS +V D  RGIP  +H EEG+   E++ TRLHAGGKF++    +Y  S
Sbjct: 54  GKWIQVTLHKDGSVSVEDEARGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGRGGAYAFS 113

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL----VVTGSAGNDTGTEV 173
           GGLHGVGVSV NALS+ L++ + R+G++  ++F  G +   L       G   +  GT V
Sbjct: 114 GGLHGVGVSVTNALSTRLEVAVWRDGSVSTLAFSGGDVIEALATRRAERGEKKH--GTRV 171

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
              P    F  ++     LQ  LR  + L   V++SL  ++S E  E       G+  ++
Sbjct: 172 RVWPDGKYFDSENIPQAELQRLLRSKAVLLPGVKVSLTIEKSGETIEWQYDQ--GLRGYL 229

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-------------ISIDLAMRWNDGYHENVLCFTNNI 280
                            +G                       + W D        + N I
Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDRLGEEGFAFGEGASWVVAWTDEGSPVRESYVNLI 289

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           P   GGTH SGLR  L + + S+VE           ++ +D     + VLS K+ DP+F 
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHA-LCPKGVKLMSEDVFARASFVLSAKVLDPQFQ 348

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            Q KE+L S +   +V +F    L  WL +H    K + + V+  +  R    RA     
Sbjct: 349 GQIKERLNSRDAVRLVSTFSRPALELWLNQHVEFGKKLAELVIRQAQAR---TRAAQKVE 405

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K    +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN 
Sbjct: 406 KKKGSGVAVLPGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNT 465

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLL 518
                D++ ++ E+  +  A+G      +  ++   LRY KI I++DADVDGAHI+ LLL
Sbjct: 466 WETERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVLLL 525

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS--- 569
           T FF+  P LI  G + + +PPLY +       +     Y  D+  LE            
Sbjct: 526 TLFFKHFPQLIGRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKEGLK 585

Query: 570 --EEIELFCDSKGVISKNDLRN 589
                       G +S   L  
Sbjct: 586 EGSWQISRFKGLGEMSAEQLWE 607



 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSR 779
           D +   G K     + R+KGLGEM+A QLWETT+NPDTR LL V I +  A Q   + + 
Sbjct: 577 DKLRKEGLKEGSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPGAEQTVHVMNM 636

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++        DI
Sbjct: 637 LMGKGEAGARRTWLEARGNEVEADI 661


>gi|317403447|gb|EFV83958.1| topoisomerase IV subunit B [Achromobacter xylosoxidans C54]
          Length = 653

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 201/607 (33%), Positives = 299/607 (49%), Gaps = 30/607 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y+  SI++LKGL+ V++RP MY   T  E+ L H++ EV+DNA DE+L G+   I
Sbjct: 1   MATPRYNEASIRVLKGLEPVRQRPGMY---TRTENPL-HIVQEVIDNAADEALAGHGKQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLH 121
            VTL++DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGGLH
Sbjct: 57  LVTLHIDGSVSVEDDGRGIPVGLHPEENAPVVELVFTRLHAGGKFDKAGGGAYAFSGGLH 116

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           GVGVSV NAL++ L++ + R+G +  + F  G +  PL      G   +GT V   P + 
Sbjct: 117 GVGVSVTNALATRLEVVVWRDGAVNRLVFKGGDVAEPLAPYDQGGRKKSGTRVRVWPDAK 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLDRH 239
            F   +     L H LR  + L   V++SL+++++ + +         G  +        
Sbjct: 177 YFDSPNIPLGELTHLLRSKAVLLPGVKVSLVNEKTGDTKTWQYQDGLRGYLSEALAGAEL 236

Query: 240 KKPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             P  +         +           + W +  +     + N IP   GGTH SGLR  
Sbjct: 237 MVPFFEGQQYADADHETFAEGEGAQWVVAWTEDGNAVRESYVNLIPTPAGGTHESGLREG 296

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L   +  + E           ++ +D     + VLS K+ DP+F  Q KE+L S +   +
Sbjct: 297 LFGAVKGFAELH-SLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNSRDAVRL 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V  F    L  WL  +    K + +  +  +  R  + +      ++    +A LPGKL 
Sbjct: 356 VGGFAKSALDLWLHSNVEYGKKLAELAIRQAQARQRSAQK---VEKRKSSGVAVLPGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC   D  ++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ ++ EI 
Sbjct: 413 DCESSDATRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFANNEIH 472

Query: 476 TLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
            +  A+G          +   LRY +I I++DADVDG+HI+ LLLT F++  P L+  G 
Sbjct: 473 DISVAIGVDPHGPGDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYKHFPKLVEAGH 532

Query: 534 LYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----EEIELFCDSKGVI 582
           +Y+ KPPL+ +       R     Y  DE  LE                        G +
Sbjct: 533 VYVAKPPLFRLDVPAQGKRPARKIYCLDEGELEAAQDKLRKEGSRESSWAVSRFKGLGEM 592

Query: 583 SKNDLRN 589
           +   L  
Sbjct: 593 NPEQLWE 599



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQAD 774
             +  D +   G +  S  + R+KGLGEMN  QLWETT+NPDTR LL V   D       
Sbjct: 564 LEAAQDKLRKEGSRESSWAVSRFKGLGEMNPEQLWETTMNPDTRRLLPVGYGDQTPEDTT 623

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +F  LMG  E   RR +I+E    + LDI
Sbjct: 624 RMFDMLMGKGESSQRRAWIEEKGNLAELDI 653


>gi|148990420|ref|ZP_01821586.1| DNA gyrase subunit B [Streptococcus pneumoniae SP6-BS73]
 gi|147924325|gb|EDK75418.1| DNA gyrase subunit B [Streptococcus pneumoniae SP6-BS73]
          Length = 587

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 242/556 (43%), Positives = 356/556 (64%), Gaps = 5/556 (0%)

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 9   IEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 68

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186
           VNALS+ L + + + G I+   +  G +   L V G   + TGT V F P  +IF+    
Sbjct: 69  VNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETTI 127

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y++ +K  +  +
Sbjct: 128 FDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYINENKDVIFDT 187

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+ALTR I  Y  K
Sbjct: 188 PIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARK 247

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++  S 
Sbjct: 248 NKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSD 307

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLADCS  +P ++E
Sbjct: 308 FLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETE 367

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG G
Sbjct: 368 LFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFG 427

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+YG+  
Sbjct: 428 AE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIYGVKV 486

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           G  ++      + ++  + ++L         +K  I +      +DD    +  +   + 
Sbjct: 487 GSEIKEYIQPGADQEIKLQEAL--ACYSEGRTKPTIQRYKGLGEMDDHQLWETTMDPEHR 544

Query: 607 NHDKTFIEQAVISGVF 622
              +  ++ A  +   
Sbjct: 545 LMARVSVDDAAEADKI 560



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 485 KVGSEIKEYIQPGADQEIK-LQEAL-ACYSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 542

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 543 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 587


>gi|293604498|ref|ZP_06686903.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Achromobacter piechaudii
           ATCC 43553]
 gi|292817079|gb|EFF76155.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Achromobacter piechaudii
           ATCC 43553]
          Length = 653

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 199/591 (33%), Positives = 303/591 (51%), Gaps = 23/591 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y   SI++LKGL+ V++RP MY   T  E+ L H++ EV+DNA DE+L GY   I
Sbjct: 1   MATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPL-HVVQEVIDNAADEALAGYGKQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLH 121
            VTL+ DGS +V D+GRGIP  LH EEG    E++ TRLHAGGKF++    +Y  SGGLH
Sbjct: 57  QVTLHSDGSVSVEDDGRGIPVGLHPEEGAPVVELVFTRLHAGGKFDKAGGGAYAFSGGLH 116

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           GVGVSV NAL++ L++ + R+G +  + F  G +  PL    + G   +GT V   P + 
Sbjct: 117 GVGVSVTNALATRLEVVVWRDGAVNRLVFKGGDVAEPLAPYEAGGRKKSGTRVRVWPDAK 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLDRH 239
            F   +     L H LR  + L   V+++L+++++ + +         G  A        
Sbjct: 177 YFDSPNIPLGELTHLLRSKAVLLPGVKVTLVNEKTGDTKTWQYQDGLRGYLAEALTGAEL 236

Query: 240 KKPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
             P  +         +N          + W +  +     + N IP   GGTH SGLR  
Sbjct: 237 MVPFFEGQQYAGADHENFAEGEGAQWVVAWTEDGNAVRESYVNLIPTPAGGTHESGLREG 296

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L   +  + E           ++ +D     + VLS K+ DP+F  Q KE+L S +   +
Sbjct: 297 LFGAVKGFAELH-SLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNSRDAVRL 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V  F    L  WL  +    K + +  +  +  R  + +      ++    +A LPGKL 
Sbjct: 356 VGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARQRSAQK---VEKRKSSGVAVLPGKLT 412

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC   D  ++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ ++ EI 
Sbjct: 413 DCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFANNEIH 472

Query: 476 TLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
            +  A+G      +   +   LRY +I I++DADVDG+HI+ LLLT F++  P L+  G 
Sbjct: 473 DISVAIGVDPHGPNDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYKHFPKLVEAGN 532

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           +++ KPPL+ +      +      + + Y +++   E  +     +GV   
Sbjct: 533 VFVAKPPLFRLDVPAQGK----RPARKIYCLDEGELEAAQDKLRKEGVREG 579



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQAD 774
             +  D +   G R+G  ++ R+KGLGEMN  QLWETT+NPDTR LL V   D       
Sbjct: 564 LEAAQDKLRKEGVREGAWAVSRFKGLGEMNPEQLWETTMNPDTRRLLPVGYGDQTPEDTT 623

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +F  LMG  E   RR +I+E    + LDI
Sbjct: 624 RMFDMLMGKGESSQRRAWIEEKGNLAELDI 653


>gi|254673078|emb|CBA07750.1| topoisomerase IV subunit B [Neisseria meningitidis alpha275]
          Length = 578

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 205/539 (38%), Positives = 292/539 (54%), Gaps = 28/539 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTF 175
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRV 173

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233
            P    F   +++   L+  LR  + L   V++SL    K   E    T  Y  G+++++
Sbjct: 174 WPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 234 SYLDRHKK---PLMQSPIRIQ-GSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285
           + L    +   P+      I  G   + SI      A+ W +        + N IP   G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +GL+ A+   +++++       +    V  DD       VLS ++ DP+F  QTK+
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRG-VKVQSDDVFGKTAFVLSARVLDPQFQGQTKD 352

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + +   +V +   D L  WL ++    K I +  +  +  R  + +      +K   
Sbjct: 353 KLTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGS 409

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      
Sbjct: 410 GVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHP 469

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           D++  + EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT F 
Sbjct: 470 DQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFH 528


>gi|241183497|gb|ACS66883.1| DNA gyrase subunit B [Kribbella aluminosa]
 gi|241183525|gb|ACS66884.1| DNA gyrase subunit B [Kribbella aluminosa]
          Length = 548

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 244/546 (44%), Positives = 343/546 (62%), Gaps = 11/546 (2%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++ EV+DNA+DE++ G+ D I VTL  DG   V DNGRGIP D+ + EG  A  V++T
Sbjct: 1   HHLVTEVVDNAVDEAMAGFGDRIVVTLLADGGVRVEDNGRGIPVDIVESEGKPAVTVVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF    YKVSGGLHGVGVSVVNALS+ L++ +K +G +Y  +F NG+ D  L  
Sbjct: 61  VLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTKLQVDVKLKGKLYTQTFTNGVPDADLAE 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G      GT +TF  S D+F    ++Y+TL  R RE +FLN  +++ + D+R     E 
Sbjct: 121 IG-TSVSNGTTITFWASEDVFETTTYSYETLATRFREYAFLNKGLELVIRDERPDHFDED 179

Query: 222 ------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENV 273
                 +  Y  G+  +V YL   ++ + +  I  +   + + +S+++A++W+  + E+V
Sbjct: 180 GKPLEQSFRYDDGLVDYVKYLTGIRETVHRDVISFEAATAENTMSLEVALQWSGSFQESV 239

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N I   +GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K
Sbjct: 240 HTFANAINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVK 299

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL ++EV+  V+  VND L AW E++P E + I++K   A+  R AAR
Sbjct: 300 LAEPQFEGQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKASAAASARIAAR 359

Query: 394 RARD-LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           +ARD    RKG+L    LPGKLADC   +P++ E+++VEGDSAGGSAK GR  + QAILP
Sbjct: 360 KARDLARNRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILP 419

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE+AR D++L + E+  +I+ALGTGI +D FD  KLRYHKI+IM DADVDG H
Sbjct: 420 IRGKILNVEKARIDRVLQNNEVLAIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQH 478

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTLLLT  FR M  LI  G +Y  +PPLY I        +   +   D L+        
Sbjct: 479 IRTLLLTLLFRFMRPLIERGHVYAAQPPLYKIRWSNQPDELAYTDRERDGLLEAGYEAGK 538

Query: 573 ELFCDS 578
           +L  ++
Sbjct: 539 KLPKEN 544


>gi|113477398|ref|YP_723459.1| DNA gyrase subunit B [Trichodesmium erythraeum IMS101]
 gi|110168446|gb|ABG52986.1| DNA gyrase subunit B [Trichodesmium erythraeum IMS101]
          Length = 891

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 207/440 (47%), Positives = 299/440 (67%), Gaps = 8/440 (1%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           + +++Y A+ IQ+L+GL+AV+KRP MYIG T G  GLHH++YEV+DN+IDE+L GY   I
Sbjct: 1   MASNNYGAEQIQVLEGLEAVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V LN DGS  V+D+GRGIP D H + G SA E +MT LHAGGKF    YKVSGGLHGVG
Sbjct: 60  EVDLNKDGSVKVTDDGRGIPVDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS W+++ + R+   +   +  G     L    +    TGT V FLP  +IF+ 
Sbjct: 120 VSVVNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNKEKRTGTSVQFLPDQEIFTT 179

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDR 238
              F+Y+T+  RLREL++LN+ V+I++ D R     S EP+  +  Y+GGI+ +V+Y++R
Sbjct: 180 GIQFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNR 239

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            K+ L +  I ++G ++++ +++A++W  D + +NVL F NNI   DGGTHL GL++ LT
Sbjct: 240 EKQSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLT 299

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +     K    K    ++ G++ REG T+V+S+K+P+P F  QTK KL ++EVR +V+
Sbjct: 300 RTMNGIARKRNKLKDSDPNLGGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVD 359

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V + LS +L+ +P  A  ++ K + A    +AARRARDL RRK VL+ + LPGKLADC
Sbjct: 360 SLVGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADC 419

Query: 418 SERDPKKSELFLVEGDSAGG 437
           S ++P++SE++LVEGDSA G
Sbjct: 420 STKNPEESEIYLVEGDSASG 439



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 5/157 (3%)

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
            +  S      ++      V    +      F +  +   +    I      +  +    
Sbjct: 735 EFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYIYIACPPLYKVERGR 794

Query: 712 DKIKITGPCSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769
           +         L + I +        ++QR+KGLGEM   QLW+TT+NP+TR+L RV+I D
Sbjct: 795 NHYYCYSDRELNELIQNEFPDNANYTIQRFKGLGEMMPVQLWDTTMNPETRTLKRVEIED 854

Query: 770 ASQADDLFSRLMGDEVEPRREFIQENS---LPSALDI 803
           A++AD +F+ LMGD V PRREFI+        + LDI
Sbjct: 855 AAEADRIFTVLMGDRVAPRREFIETYGPKLKITDLDI 891



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/202 (37%), Positives = 108/202 (53%), Gaps = 7/202 (3%)

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           SAKQGR R  QAILPLRGKI+N+E+    K+  + EI ++ITALG GI  D FD ++LRY
Sbjct: 684 SAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSMITALGLGIKGDEFDASQLRY 743

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           HK+IIMTDADVDG+HIRTLLLTFF+R   +L+  G++YI  PPLY + RG++  Y   + 
Sbjct: 744 HKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYIYIACPPLYKVERGRNHYYCYSDR 803

Query: 558 SLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
            L + + N+               G +    L +       ++   +       +   E 
Sbjct: 804 ELNELIQNEFPDNANYTIQRFKGLGEMMPVQLWDT-----TMNPETRTLKRVEIEDAAEA 858

Query: 616 AVISGVFNCESDQEINVSLASK 637
             I  V   +        + + 
Sbjct: 859 DRIFTVLMGDRVAPRREFIETY 880


>gi|299530844|ref|ZP_07044259.1| DNA topoisomerase IV subunit B [Comamonas testosteroni S44]
 gi|298721360|gb|EFI62302.1| DNA topoisomerase IV subunit B [Comamonas testosteroni S44]
          Length = 656

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 207/623 (33%), Positives = 314/623 (50%), Gaps = 33/623 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             ++ Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L GY   I
Sbjct: 4   KPSNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HILQEVIDNAADEALAGYGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLH 121
             T++ DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGGLH
Sbjct: 60  KFTMHADGSYSVEDDGRGIPFGLHPEEKAPVVELVFTRLHAGGKFDKGNGGAYSFSGGLH 119

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT----GSAGNDTGTEVTFLP 177
           GVGVSV NAL++ L++++ R+G +  + F  G +  PL V     G      GT V   P
Sbjct: 120 GVGVSVTNALATRLEVQVHRDGQVATLVFSGGDVIEPLKVRPLQAGERKQ--GTTVRAWP 177

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            +  F         L H LR  + L   V +SLI+++S + +      KGG+  +++   
Sbjct: 178 DAKYFESSALPMGELVHLLRSKAVLMPGVAVSLINEKSRDTQSWQF--KGGLRDYLAQSL 235

Query: 238 RHKKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
             +  +          ++N S          + + +        + N IP   GGTH SG
Sbjct: 236 HGEPVIPLFEGEGFADKNNDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGTHDSG 295

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR  L + + ++++           ++ DD     + VL+ K+ DP+F  Q KE+L S +
Sbjct: 296 LRDGLFQAVKAFIDMH-SLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLNSRD 354

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
              +V  FV   L  WL EH    K + +  + A+  R  A +      ++    +A LP
Sbjct: 355 AVRLVSGFVRPALELWLNEHVDWGKKLAEIAIKAAQTRQKAGQK---VEKRKGSGVAVLP 411

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL DC  +D   +E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ ++
Sbjct: 412 GKLTDCESKDIAVNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVDRDRLFAN 471

Query: 472 QEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT FF+  P LI
Sbjct: 472 NEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFKHFPKLI 531

Query: 530 HNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             G +++  PPL+ +       +     Y  D   L+  +   +        C       
Sbjct: 532 EAGHIHVALPPLFRVDVPARGKKPAIKVYALDAGELDAIIEKCAKDGVPREKCQVSRFKG 591

Query: 584 KNDLRNFIDDALKIDKLIKDFYP 606
             ++         ++   +   P
Sbjct: 592 LGEMNAEQLWETTLNPDTRRLLP 614



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 9/90 (10%)

Query: 723 LDTIFSI-GRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK-IT-DASQAD 774
           LD I     + G+      + R+KGLGEMNA QLWETTLNPDTR LL V+ +  D +Q++
Sbjct: 567 LDAIIEKCAKDGVPREKCQVSRFKGLGEMNAEQLWETTLNPDTRRLLPVQFMNLDFAQSE 626

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            + ++LMG  E   RRE ++ +     +DI
Sbjct: 627 AVVTKLMGKGEAAARRELMELHGDAVEVDI 656


>gi|68138894|gb|AAY86032.1| GyrB [Burkholderia vietnamiensis]
          Length = 574

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 254/577 (44%), Positives = 359/577 (62%), Gaps = 7/577 (1%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG
Sbjct: 1   RGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGG 58

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTH
Sbjct: 59  VKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTH 118

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLV
Sbjct: 119 LTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLV 178

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD  
Sbjct: 179 SSEVRAPVEEVVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAREMTRRKGVLDGV 238

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+
Sbjct: 239 GLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKL 298

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP +
Sbjct: 299 LSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEM 358

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           +  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L 
Sbjct: 359 VERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSENGAAISGDALG 418

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
                 L    +I      +D   +E  +     +  S +E   + A  L   L+    K
Sbjct: 419 ELARSYLLSQSVIGRLSRLYDPAALEAIMDGVSIDL-SSEESTEASAKALHAALHDETLK 477

Query: 649 SEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
           +E      +        + V+R   G     V++     +   +     +   E      
Sbjct: 478 NEVRVVPSYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTAKTFEGLIQAG 537

Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
             +      + +T   S +  + +   + +S QRYKG
Sbjct: 538 AVIKRGERSMAVTDFKSAMKWLLADAERNVSKQRYKG 574


>gi|296114068|ref|YP_003628006.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis RH4]
 gi|295921762|gb|ADG62113.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis RH4]
          Length = 601

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 210/608 (34%), Positives = 309/608 (50%), Gaps = 19/608 (3%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           H+  EV+DN++DE+L G+A  I V L+ DGS +V D+GRG+PTD+H E   S  E+I+TR
Sbjct: 5   HLAQEVIDNSVDEALAGFARHIIVILHKDGSLSVEDDGRGMPTDIHPEFNQSGVELILTR 64

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+ ++Y+VSGGLHGVG+SVVNALS+ +++ + R+G ++ M+F +G     L+  
Sbjct: 65  LHAGGKFSTENYQVSGGLHGVGISVVNALSTRVEVTVWRDGLMHTMAFEHGEPVTALIAD 124

Query: 163 GSA-GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            SA     GT+V F      F    F+  TL+H L+  + L + + I  I +  P     
Sbjct: 125 KSANKKKRGTKVQFWVDGQYFDTPKFSIKTLKHNLKAKAVLAAGLHIDFISEIEP-NDSE 183

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ-----GSRDNISIDLAMRWNDGYHENVLCF 276
           +  +  G+  +++        L + P  +      G R   +  L+    +G       +
Sbjct: 184 SWQFTDGVVQYLTEQLDGSDTLPKEPFYVSQEPTLGERGGATFALS-WLAEGGTPITESY 242

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N IP   GGTH++GLR+ +   +  + +      +    + G+D  +G   +LS+K  +
Sbjct: 243 VNLIPTAQGGTHVNGLRTGVLEALREFCDIHNLLPRQ-IKLSGEDVWDGVNYILSLKFVE 301

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FS QTKE+L S E   +V++   D  S WL +HP  AK I +  +  +  R A  +  
Sbjct: 302 PQFSGQTKERLSSREAAPLVQTLAKDAFSLWLNQHPDHAKAIAELAISKATKRLATAQK- 360

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
               RK V    +LPGKL DC     + SELFLVEG SAGGSAKQ R    QAILPLRGK
Sbjct: 361 --VARKKVTQGPALPGKLWDCRGGLKEGSELFLVEGQSAGGSAKQARDNAFQAILPLRGK 418

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILN      D +LSSQEI  +  A+G      S D+++LRY KI I+ DAD DG HI TL
Sbjct: 419 ILNAWEVSSDTVLSSQEIHDIAIAIGVDP--ASDDLSELRYDKICILADADSDGLHIATL 476

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           +   F +  P+LI  G LY+  PPLY I  GK + Y  D E LE  L      +      
Sbjct: 477 ICALFVKHFPALIEAGHLYVAVPPLYRIDAGKDVYYALDNEELEQVLARLGNKKTQITRF 536

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              G ++ + L+        ++   +               I  +   +           
Sbjct: 537 KGLGEMNPSQLKET-----TMNPDTRKLIRLDLDDTASTNSIMDMLLAKKRSADRKRWLE 591

Query: 637 KLANRLNF 644
              +  + 
Sbjct: 592 TKGDLADI 599



 Score = 90.8 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 721 SLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             L+ + + +G K   + R+KGLGEMN SQL ETT+NPDTR L+R+ + D +  + +   
Sbjct: 517 EELEQVLARLGNKKTQITRFKGLGEMNPSQLKETTMNPDTRKLIRLDLDDTASTNSIMDM 576

Query: 780 L 780
           L
Sbjct: 577 L 577


>gi|58761297|gb|AAW82363.1| DNA gyrase subunit B [Dehalococcoides sp. VS]
          Length = 443

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 221/446 (49%), Positives = 302/446 (67%), Gaps = 4/446 (0%)

Query: 51  NAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           N++DE++ G  D I V +  DGS +V DNGRGIP D+H    ISA E +MT LHAG KF 
Sbjct: 2   NSVDEAMAGVCDRIKVIIYKDGSVSVEDNGRGIPIDIHPVTKISALETVMTVLHAGAKFG 61

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y+VSGGLHGVG SVVNAL+ W  ++++R G IY+ S+  G    PL   G   + +G
Sbjct: 62  GKTYQVSGGLHGVGASVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEVG-VSDGSG 120

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T   F   S IFS  +++++TL  RLRE+++LN  +++ + D++S + R      +GGI 
Sbjct: 121 TTTIFKADSQIFSTTEYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERTYYF--EGGIT 178

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +L+R+++   + PI I    D+  +++A+++NDGY ++ L F N +   DGGTHL+
Sbjct: 179 GFVRHLNRNREVRHRQPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTIDGGTHLT 238

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR    Y  KS   K    +++GDD REG  +++S+K+P+P+F  QTK KL + 
Sbjct: 239 GFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNI 298

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E++S VES V + LS +LEEHP + K I++K + A+  R+AAR+ARDL  RK  LD  +L
Sbjct: 299 EIKSFVESAVTEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTL 358

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERD    ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A  DKML+
Sbjct: 359 PGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLA 418

Query: 471 SQEIGTLITALGTGIGQDSFDINKLR 496
            +EI  +ITAL  GI  + FD  KLR
Sbjct: 419 HEEIRAIITALAAGI-DNDFDPAKLR 443


>gi|171059316|ref|YP_001791665.1| DNA topoisomerase IV subunit B [Leptothrix cholodnii SP-6]
 gi|170776761|gb|ACB34900.1| DNA topoisomerase (ATP-hydrolyzing) [Leptothrix cholodnii SP-6]
          Length = 658

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 221/651 (33%), Positives = 325/651 (49%), Gaps = 30/651 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS    N++Y   SI++LKGL+ VK+RP MY   T  ++ L H++ E +DNA DE+L GY
Sbjct: 1   MSTPKPNNAYAEASIRVLKGLEPVKQRPGMY---TRTDTPL-HIVQEAIDNAADEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
              I VTL+ DGS +V D+GRGIP  LH EE +   E++ TRLHAGGKF++ S   Y  S
Sbjct: 57  GKSIAVTLHADGSVSVEDDGRGIPFGLHPEEQVPVVEIVFTRLHAGGKFDKGSGGAYSFS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTF 175
           GGLHGVGVSV NAL++ L++++ R+  +  ++F  G +  PLVV    S     GT V  
Sbjct: 117 GGLHGVGVSVTNALATRLQVQVSRDKKVATLAFAGGDVIEPLVVRPIASGDRRQGTSVRV 176

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P    F   +     L H LR  + L   V ++L ++++ + +  T  YKGG+  ++  
Sbjct: 177 WPDPKYFESAELPRGELMHLLRSKAVLMPGVTVTLRNEKTGDVQ--TWLYKGGLRDYLMQ 234

Query: 236 LDRHKK--PLMQSPIRIQGSRDNISID-----LAMRWNDGYHENVLCFTNNIPQKDGGTH 288
               +   PL +              +       + + +        + N IP   GGTH
Sbjct: 235 NLNAEPLIPLFEGEQYASAGETENFAEGEGAAWCVAFIEEGVNLRESYVNLIPTVAGGTH 294

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +GL+  L + +  +VE           ++ DD     + VLS K+ DP+F  QTKE+L 
Sbjct: 295 EAGLKDGLFQAVKGFVELHA-LCPKGVKLMPDDVFGRASFVLSAKVLDPQFQGQTKERLN 353

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           S +   +V +FV   L  WL +H    K + + V+  +  R  A +      +K    +A
Sbjct: 354 SRDALRLVTAFVRPALELWLNQHVEHGKKLAELVIRQAQARQKAGQK---VEKKKGSGVA 410

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKL DC  RD   +E+FLVEGDSAGGSAK GR++E QAILPLRGK+LN      D++
Sbjct: 411 VLPGKLTDCESRDLSLNEVFLVEGDSAGGSAKMGRNKETQAILPLRGKVLNAWEVERDRL 470

Query: 469 LSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            ++ EI  +  A+G      +   +   LRY KI I++DADVDG+HI+ LLLT FFR  P
Sbjct: 471 FANNEIHDIAVAVGVDPHGANDSPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFP 530

Query: 527 SLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            LI NG +YI KPPL+ +       +  +  Y  D+  L+  L         E       
Sbjct: 531 KLIENGNIYIAKPPLFRVDAPARGKKPAAKMYALDDGELQAILDKLRKEGAREGSWSISR 590

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                ++         ++   +             A +  +       E  
Sbjct: 591 FKGLGEMSAEQLWETTLNPDTRRLLRVEYGRLDFAATVDSLTKLMGKGEAA 641



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 7/91 (7%)

Query: 719 PCSLLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRV---KITDASQA 773
             ++LD +   G +    S+ R+KGLGEM+A QLWETTLNPDTR LLRV   ++  A+  
Sbjct: 569 LQAILDKLRKEGAREGSWSISRFKGLGEMSAEQLWETTLNPDTRRLLRVEYGRLDFAATV 628

Query: 774 DDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           D L ++LMG  E   RRE ++ +     +D+
Sbjct: 629 DSL-TKLMGKGEAASRRELMELHGDSVVVDV 658


>gi|212712615|ref|ZP_03320743.1| hypothetical protein PROVALCAL_03710 [Providencia alcalifaciens DSM
           30120]
 gi|212684831|gb|EEB44359.1| hypothetical protein PROVALCAL_03710 [Providencia alcalifaciens DSM
           30120]
          Length = 318

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 178/309 (57%), Positives = 228/309 (73%), Gaps = 4/309 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ D I +
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
           VVNALS  L+L I+R+G ++E  + +G    PL V G   + TGT V F PS D F  V 
Sbjct: 122 VVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGVT 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F YD L  RLRELSFLNS V I LIDKR  +       Y+GGI+AFV YL R+K P+  
Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHP 238

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           S       +D I ++++M+WNDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y+E
Sbjct: 239 SVFYFSTEKDGIGVEVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYME 298

Query: 306 KSFGSKKDK 314
           K    KK K
Sbjct: 299 KEGYQKKRK 307


>gi|454038|gb|AAA58940.1| DNA gyrase b subunit [Borrelia burgdorferi]
          Length = 385

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 179/382 (46%), Positives = 265/382 (69%), Gaps = 3/382 (0%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +Y A +IQ+LKGL+AV+KRP MYIG     +GLHH++YEV+DN+IDE+L  + D I V +
Sbjct: 6   NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAAFCDRIDVII 64

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGIS-AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           N+D + TV DNGRGIPTD+H+EEGIS   E+++T+LH+GGKFN+ +YKVSGGLHGVG+SV
Sbjct: 65  NLDNTITVIDNGRGIPTDIHEEEGISVTLELVLTKLHSGGKFNKGTYKVSGGLHGVGISV 124

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALSS+L++ + R+G I+  +F  GI  + + V G +   TGT+VTFL  S+IF   D+
Sbjct: 125 VNALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDY 183

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           N+D L+ RL+EL+FLN  + IS+ DKR  + +    +++GGI++FV YL    K     P
Sbjct: 184 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEP 243

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             I G  +++ +++ ++W + Y +N+L F NNI  ++GGTH+ G RS LT+ +    + S
Sbjct: 244 YYIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNS 303

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             SKKD  ++ GDD +EG T+V+S+K+P+P+F  QTK KL +SE+R +VE  V + L   
Sbjct: 304 KISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEI 363

Query: 368 LEEHPLEAKIIVKKVLDASMVR 389
           +  +PLE   I+ K + A+  R
Sbjct: 364 INLNPLEIDTILGKAIKAARAR 385


>gi|311105320|ref|YP_003978173.1| DNA topoisomerase 4 subunit B [Achromobacter xylosoxidans A8]
 gi|310760009|gb|ADP15458.1| DNA topoisomerase 4 subunit B [Achromobacter xylosoxidans A8]
          Length = 653

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 199/595 (33%), Positives = 303/595 (50%), Gaps = 31/595 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y   SI++LKGL+ V++RP MY   T  E+ L H++ EV+DNA DE+L GY   I
Sbjct: 1   MATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPL-HVVQEVIDNAADEALAGYGKQI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLH 121
            VTL++DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGGLH
Sbjct: 57  QVTLHIDGSVSVEDDGRGIPVGLHPEEHAPVVELVFTRLHAGGKFDKAGGGAYAFSGGLH 116

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSD 180
           GVGVSV NAL++ L++ + R+G +  + F  G +  PL      G   +GT V   P + 
Sbjct: 117 GVGVSVTNALATRLEVVVWRDGAVNRLVFKGGDVAEPLAPYDQGGRKKSGTRVRVWPDAK 176

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK---------GGIEA 231
            F   +     L H LR  + L   V++SL+++++ + +                 G E 
Sbjct: 177 YFDSPNIPLGELTHLLRSKAVLLPGVKVSLVNEKTGDTKTWQYQDGLRGYLSEALAGAEL 236

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            V + +  +          +G      +     W +  +     + N IP   GGTH SG
Sbjct: 237 MVPFFEGEQYAGADHENFAEGEGAQWVV----AWTEDGNAVRESYVNLIPTPAGGTHESG 292

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR  L   +  + E           ++ +D     + VLS K+ DP+F  Q KE+L S +
Sbjct: 293 LREGLFSAVKGFAELH-SLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNSRD 351

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
              +V  F    L  WL  +    K + +  +  +  R  + +      ++    +A LP
Sbjct: 352 AVRLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARQRSAQK---VEKRKSSGVAVLP 408

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL DC   D  ++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ ++
Sbjct: 409 GKLTDCESSDATRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFAN 468

Query: 472 QEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            EI  +  A+G          +   LRY +I I++DADVDG+HI+ LLLT F++  P L+
Sbjct: 469 NEIHDISVAIGVDPHGPGDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYKHFPKLV 528

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
             G +++ KPPL+ +      +      + + Y +++   E  +     +GV   
Sbjct: 529 EAGNVFVAKPPLFRLDVPAQGK----RPARKIYCLDEGELEAAQDKLRKEGVREG 579



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQAD 774
             +  D +   G R+G  ++ R+KGLGEMN  QLWETT+NPDTR LL V   D       
Sbjct: 564 LEAAQDKLRKEGVREGAWAVSRFKGLGEMNPEQLWETTMNPDTRRLLPVGYGDLTPEDTT 623

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +F  LMG  E   RR +I+E    + LDI
Sbjct: 624 RMFDMLMGKGESSQRRAWIEEKGNLAELDI 653


>gi|264677300|ref|YP_003277206.1| DNA topoisomerase, type IIA, subunit B, region [Comamonas
           testosteroni CNB-2]
 gi|262207812|gb|ACY31910.1| DNA topoisomerase, type IIA, subunit B, region [Comamonas
           testosteroni CNB-2]
          Length = 656

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 206/623 (33%), Positives = 313/623 (50%), Gaps = 33/623 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             ++ Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L GY   I
Sbjct: 4   KPSNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HILQEVIDNAADEALAGYGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLH 121
              ++ DGS +V D+GRGIP  LH EE     E++ TRLHAGGKF++    +Y  SGGLH
Sbjct: 60  KFIMHADGSYSVEDDGRGIPFGLHPEEKAPVVELVFTRLHAGGKFDKGNGGAYSFSGGLH 119

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT----GSAGNDTGTEVTFLP 177
           GVGVSV NAL++ L++++ R+G +  + F  G +  PL V     G      GT V   P
Sbjct: 120 GVGVSVTNALATRLEVQVHRDGQVATLVFSGGDVIEPLKVRPLQAGERKQ--GTTVRAWP 177

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            +  F         L H LR  + L   V +SLI+++S + +      KGG+  +++   
Sbjct: 178 DAKYFESSALPMGELVHLLRSKAVLMPGVAVSLINEKSRDTQSWQF--KGGLRDYLAQSL 235

Query: 238 RHKKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
             +  +          ++N S          + + +        + N IP   GGTH SG
Sbjct: 236 HGEPVIPLFEGEGFADKNNDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGTHDSG 295

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR  L + + ++++           ++ DD     + VL+ K+ DP+F  Q KE+L S +
Sbjct: 296 LRDGLFQAVKAFIDMH-SLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLNSRD 354

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
              +V  FV   L  WL EH    K + +  + A+  R  A +      ++    +A LP
Sbjct: 355 AVRLVSGFVRPALELWLNEHVDWGKKLAEIAIKAAQTRQKAGQK---VEKRKGSGVAVLP 411

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL DC  +D   +E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ ++
Sbjct: 412 GKLTDCESKDIAVNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVDRDRLFAN 471

Query: 472 QEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT FF+  P LI
Sbjct: 472 NEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFKHFPKLI 531

Query: 530 HNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             G +++  PPL+ +       +     Y  D   L+  +   +        C       
Sbjct: 532 EAGHIHVALPPLFRVDVPARGKKPAIKVYALDAGELDAIIEKCAKDGVPREKCQVSRFKG 591

Query: 584 KNDLRNFIDDALKIDKLIKDFYP 606
             ++         ++   +   P
Sbjct: 592 LGEMNAEQLWETTLNPDTRRLLP 614



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 9/90 (10%)

Query: 723 LDTIFSI-GRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK-IT-DASQAD 774
           LD I     + G+      + R+KGLGEMNA QLWETTLNPDTR LL V+ +  D +Q++
Sbjct: 567 LDAIIEKCAKDGVPREKCQVSRFKGLGEMNAEQLWETTLNPDTRRLLPVQFMNLDFAQSE 626

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            + ++LMG  E   RRE ++ +     +DI
Sbjct: 627 AVVTKLMGKGEAAARRELMELHGDAVEVDI 656


>gi|297571340|ref|YP_003697114.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931687|gb|ADH92495.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 701

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 238/656 (36%), Positives = 347/656 (52%), Gaps = 52/656 (7%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
                Y A  + +L+GL+AV+KRP MYIG TD   GL H  +E++DNA+DE+ EG+A  I
Sbjct: 3   QTKEEYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCAWEIIDNAVDEATEGFATSI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           ++TL+ D S  VSD+GRGIP D     G S  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 62  SITLHPDTSVEVSDDGRGIPVDEVPGTGASGVEVVYTKLHAGGKFGGGSYSSSGGLHGVG 121

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVTGS 164
            SVVNALS  L + +KR G ++E+SF  G                      ++PL +TG 
Sbjct: 122 ASVVNALSQRLDVAVKRNGKVHEISFQRGEPGMFDDSGNPSPDATFKPALDESPLRITGK 181

Query: 165 -AGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            A   TGT V +     IF     F+YD L  R+RE +FL   + I + D R  EP E  
Sbjct: 182 VAKKTTGTRVRYWYDPQIFPSDSQFSYDALIERVREKAFLVPGLTIRVSDLRGEEPVEEE 241

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------------------RDNISIDLA 262
             Y GG+  FV +L           +  +G+                         +D+A
Sbjct: 242 FTYNGGVVDFVDFLASDPAVTSTMHLTGEGTFTETVQVLDKKSGHLKASDVERTCVVDIA 301

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS---KKDKRSVIG 319
           +RW  GY      F N I    GGTH++G    L + + + +++             +  
Sbjct: 302 LRWGSGYETIEESFVNIIATPKGGTHVTGFEQGLVKVLRTAIDQKSRQLKVTARDPRIEK 361

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK--- 376
           DD   G ++V++++ P+P+F  QTKE L ++ +R++V   V   LSA L     + K   
Sbjct: 362 DDILAGLSAVVAVRFPEPQFEGQTKEILGTAPIRAIVAKVVETELSAILASTKRDQKTEN 421

Query: 377 -IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
             +++K++     R AAR  ++++RRK  L+ +SLP KLADC   D ++SELF+VEGDSA
Sbjct: 422 SRLLEKIVAEMRARVAARTQKEISRRKNALETSSLPAKLADCRAEDVERSELFIVEGDSA 481

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
            G+AK  R+ E QA+LP+RGKILNV++A    +L +QE+ ++I  +G G G+  FD++  
Sbjct: 482 LGTAKLARNSEFQALLPIRGKILNVQKASPADILKNQEVSSIIQVIGAGSGRT-FDLDAA 540

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RY K+I MTDADVDGAHIRTLLLT FFR M  L+  G +Y   PPL+ I      +   +
Sbjct: 541 RYGKVIFMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAVPPLHRIEVAGQGRRKGE 600

Query: 556 EES-LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
                 D  +++ L++        K  I +      +D     +  +   + +  +
Sbjct: 601 YIYTYSDTQLHKELTKLERAKKSYKEPIQRYKGLGEMDADQLAETTMDPAHRSLRR 656



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 708 ICNGDKIKITGPCSLLDTI--FSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLL 763
              G+ I       L   +      +K     +QRYKGLGEM+A QL ETT++P  RSL 
Sbjct: 596 RRKGEYIYTYSDTQLHKELTKLERAKKSYKEPIQRYKGLGEMDADQLAETTMDPAHRSLR 655

Query: 764 RVKITDASQ---ADDLFSRLMGDEVEPRREFIQENS 796
           R+ + D +    A++ F  LMG +V PR+EFI + +
Sbjct: 656 RISMADEAALRYAEETFELLMGSDVAPRKEFIIDGA 691


>gi|313500894|gb|ADR62260.1| ParE [Pseudomonas putida BIRD-1]
          Length = 606

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 216/544 (39%), Positives = 308/544 (56%), Gaps = 14/544 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD     +H+  EV+DN++DE+L G+A  + V L+ D S  VSD+GRG+P D+H 
Sbjct: 1   MY---TDTSRP-NHLAQEVIDNSVDEALAGHARSVQVILHADHSLEVSDDGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGLHGVG+SVVNALS+ +++R+KR+GN Y+M+
Sbjct: 57  EEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYQMT 116

Query: 150 FINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F +G   + L V GS    +TGT V F P    F    F+   L+H L+  + L   + +
Sbjct: 117 FADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSPKFSISRLKHVLKAKAVLCPGLLV 176

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA-MRWND 267
           S  DK S E   +   Y+ G+ +++       + L   P     + +  ++D A +   +
Sbjct: 177 SFEDKASGEK--VEWHYEDGLRSYLVDSVNEFQRLPDEPFCGSLAGNKEAVDWALLWLPE 234

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G       + N IP   GGTH++GLR  L   +  + E      +    +  +D  E  T
Sbjct: 235 GGDSIQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLAPEDVWERIT 293

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
            VLS+KM DP+FS QTKE+L S E  + V   V D  S WL  HP     + +  +  + 
Sbjct: 294 FVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNA- 352

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
                 +A     RK +    +LPGKLADC+ +DP ++ELFLVEGDSAGGSAKQ R +E 
Sbjct: 353 --GRRLKASKKVERKRITQGPALPGKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEF 410

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGKILN       ++L+SQE+  +  A+G   G    D+ +LRY KI I+ DAD
Sbjct: 411 QAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDPGAT--DLAQLRYGKICILADAD 468

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
            DG HI TLL   F +   +L+  G +Y+  PPLY I  GK + Y  DE   +  L    
Sbjct: 469 SDGLHIATLLCALFVQHFRALVEAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLV 528

Query: 568 LSEE 571
             ++
Sbjct: 529 AEKK 532



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D     +L  +L
Sbjct: 523 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKL 582

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 583 LAKKRAGD----RKSWLET 597


>gi|319761821|ref|YP_004125758.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans
           BC]
 gi|330826319|ref|YP_004389622.1| DNA topoisomerase [Alicycliphilus denitrificans K601]
 gi|317116382|gb|ADU98870.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans
           BC]
 gi|329311691|gb|AEB86106.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans
           K601]
          Length = 658

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 225/670 (33%), Positives = 325/670 (48%), Gaps = 39/670 (5%)

Query: 1   MSDNIQNSS-YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    ++S Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EVLDNA DE+L G
Sbjct: 1   MAVKPSSASAYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVLDNAADEALAG 56

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKV 116
           Y   I VTL+ DGS +V D+GRGIP  LH EEG    E++ TRLHAGGKF++    +Y  
Sbjct: 57  YGKKIKVTLHEDGSVSVEDDGRGIPFGLHPEEGAPVVELVFTRLHAGGKFDKGQGGAYSF 116

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTEVT 174
           SGGLHGVGVSV NALS+ L++   REG I  ++F  G +  PL+    A  +   GT V 
Sbjct: 117 SGGLHGVGVSVTNALSTRLEVSTHREGQIARLAFAAGDVAEPLLARPLAAGERRQGTTVR 176

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
             P +  F         L H LR  + L   V +SL+++++ + +      KGG+  +++
Sbjct: 177 VWPDAKYFESAQLPMGELTHLLRSKAVLMPGVSVSLVNEKTRDQQAWQY--KGGLADYLA 234

Query: 235 YLDRHKKPLMQSPIRIQGSRDN----------ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
                  P         G                   A+ + +        + N IP   
Sbjct: 235 QSL----PADPVIPLFSGEGFADAGHDSFAEGEGAAWAVAFTEEGSPVRESYVNLIPTSA 290

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH SGLR  L + +  ++E           ++ +D     + VLS K+ DP+F  Q K
Sbjct: 291 GGTHDSGLRDGLFQAVKGFIELHA-LLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIK 349

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L S +   +V SFV   L  WL +H    K + +  + A+  R  A +      +K  
Sbjct: 350 ERLNSRDAVRLVSSFVRPALELWLNQHVDYGKRLAELAIKAAQTRQRAGQK---VEKKKG 406

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +A LPGKL DC  RD   +E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN     
Sbjct: 407 SGVAVLPGKLTDCESRDTAYNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVE 466

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
            D +  + E+  +  A+G          +   LRY K+ I++DADVDGAHI+ LLLT FF
Sbjct: 467 RDLLFRNNEVHDISVAIGVDPHGPHDSPDLSGLRYGKVCILSDADVDGAHIQVLLLTLFF 526

Query: 523 RQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           R  P LI  G +Y+ +PPLY +       +  +  Y  DE  LE  L   +        C
Sbjct: 527 RHFPRLIEAGRIYVARPPLYRVDVPARGKKPAAKLYALDEGELEAILDKAAKDGVPREKC 586

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                    ++         ++   +   P      ++ A   G+      +    S   
Sbjct: 587 QISRFKGLGEMNAEQLWETTLNPDTRRLLP-VQLGALDFAATEGLITKLMGKGEAASRRE 645

Query: 637 KLANRLNFIA 646
            +    + + 
Sbjct: 646 LMELHGDAVE 655



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 9/90 (10%)

Query: 723 LDTIF-SIGRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
           L+ I     + G+      + R+KGLGEMNA QLWETTLNPDTR LL V++   D +  +
Sbjct: 569 LEAILDKAAKDGVPREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGALDFAATE 628

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            L ++LMG  E   RRE ++ +     +DI
Sbjct: 629 GLITKLMGKGEAASRRELMELHGDAVEVDI 658


>gi|148470205|gb|ABQ66050.1| gyrase b [uncultured bacterium]
 gi|148971407|gb|ABR20241.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 221/425 (52%), Positives = 303/425 (71%), Gaps = 5/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ +YKVSGGLHGVGVS VNALS  L++ + + G +YEM F  G   
Sbjct: 1   EVIMTVLHAGGKFDKNTYKVSGGLHGVGVSCVNALSKKLQVEVFQNGKMYEMGFAKGKPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL V G +    GT+V+F P    F+V  ++YD L  RLREL+FLN  + I   D+R+ 
Sbjct: 61  HPLKVMGESP-KRGTKVSFWPDDSTFTVTVYDYDVLLKRLRELAFLNRGITIHFRDERND 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI----QGSRDNISIDLAMRWNDGYHEN 272
           E   ++  Y+GGI +FVSYL+ +K PL   PI +    +G+   I  ++AM+WND Y EN
Sbjct: 120 EHDPVSFCYEGGIASFVSYLNENKTPLFPKPIYVLGRKEGTDGTIEFEVAMQWNDTYTEN 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  + NNIP + GG+H++G  +ALTR +  Y++     K DK SV G+D REG T+V+S+
Sbjct: 180 LYSYVNNIPTRQGGSHVTGFSTALTRVLNQYIKNHQILKSDKISVSGEDMREGLTAVVSV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+F  QTK +L +S+V S+V+    + L+ +L+E+P  A+ IV+K + A+  R+AA
Sbjct: 240 KVPNPQFEGQTKRRLGNSDVASIVQQITGEELTTFLDENPPIARAIVEKAIIAAQAREAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LT RK  LD A LPGKL DC E+DP   E+++VEGDSAGGSAKQG  R  QAILP
Sbjct: 300 RKARELTLRKTALDSARLPGKLTDCQEKDPALCEIYIVEGDSAGGSAKQGGDRRFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE+AR +K+L + E+G ++ A G GIG D+F+++KLRYHKIIIMTDADVDG+H
Sbjct: 360 IRGKILNVEKARLEKVLQNTEVGAMVAAFGCGIGVDNFNLDKLRYHKIIIMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|239816401|ref|YP_002945311.1| DNA topoisomerase IV subunit B [Variovorax paradoxus S110]
 gi|239802978|gb|ACS20045.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus S110]
          Length = 665

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 218/655 (33%), Positives = 319/655 (48%), Gaps = 34/655 (5%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSC 74
           I++LKGL+ VK+RP MY   T  ++ L H+I EVLDNA DE+L G+   I VTL+ D S 
Sbjct: 23  IRVLKGLEPVKQRPGMY---TRTDNPL-HVIQEVLDNAADEALAGHGKKIKVTLHADNSV 78

Query: 75  TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVSGGLHGVGVSVVNAL 131
           +V D+GRGIP  LH EE     E++ TRLHAGGKF++ S   Y  SGGLHGVGVSV NAL
Sbjct: 79  SVEDDGRGIPFGLHPEEKAPVVELVYTRLHAGGKFDKGSGGAYSFSGGLHGVGVSVTNAL 138

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSVQDFNY 189
           S  L++   REG++  ++F  G +  PL V    +     GT V   P +  F       
Sbjct: 139 SKRLEVTTHREGSVARLAFSGGDVIEPLQVRKLEAGERKQGTTVRAWPDAKYFETAALPM 198

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
             L H LR  + L   V ++L  +++ E +     YKGG+  ++         +      
Sbjct: 199 AELTHLLRSKAVLMPGVSVTLTVEKTKETQ--QWLYKGGLSDYLMQTLNGDPVIPLFEGS 256

Query: 250 IQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               ++  +       D  + + +        + N IP   GGTH SGLR  L   +  +
Sbjct: 257 GHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNLIPTSAGGTHESGLRDGLFTAVKGF 316

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E           ++ +D     + VLS K+ DP+F  Q KE+L S +   +V SFV   
Sbjct: 317 IELH-SLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAVRLVSSFVRPA 375

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  WL +H    + + +  + A+  R  A +      ++    +A LPGKL DC  +D  
Sbjct: 376 LELWLNQHVDYGRRLAELAIKAAQTRQRAGQK---VEKRKGSGVAVLPGKLTDCESKDIS 432

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +E+FLVEGDSAGGSAK GR +E+QAILPLRGK+LN      D++ ++ EI  +  A+G 
Sbjct: 433 HNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFANTEIHDISVAVGV 492

Query: 484 GIGQDSFDINK--LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
                +   +   LRY KI I++DADVDG+HI+ LLLT FFR  P LI  G +Y+ KPPL
Sbjct: 493 DPHGPTDSPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHVYVAKPPL 552

Query: 542 YGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595
           + +       +  S  Y  DE  L   L             +    IS+      +    
Sbjct: 553 FRVDAPARGKKPASKVYALDEGELTATLDKLRKDG----VREGAWSISRFKGLGEMSAEQ 608

Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +  +        K  + +   S     E  + +    A+     +   A+  +
Sbjct: 609 LWETTLNPDTRRLMKVQLGRFDFSST-QGEITKLMGKGEAAARRELMELRADDVD 662



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 5/86 (5%)

Query: 723 LDTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFS 778
           LD +   G R+G  S+ R+KGLGEM+A QLWETTLNPDTR L++V++   D S      +
Sbjct: 580 LDKLRKDGVREGAWSISRFKGLGEMSAEQLWETTLNPDTRRLMKVQLGRFDFSSTQGEIT 639

Query: 779 RLMGD-EVEPRREFIQENSLPSALDI 803
           +LMG  E   RRE ++  +    +D+
Sbjct: 640 KLMGKGEAAARRELMELRADDVDIDV 665


>gi|4835907|gb|AAD30293.1|AF139115_1 gyrase B subunit [Pseudoalteromonas piscicida]
          Length = 420

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 265/422 (62%), Positives = 337/422 (79%), Gaps = 3/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G +++  +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVHQQKYTMGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G A   TGTE+ F PS++ FS  +F+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLGVIGEAE-STGTELRFWPSAETFSDTNFHYDILAKRLRELSFLNSGVSIILNDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E ++    Y+GGI+AFV+YL+R K P+ QS       RD+ IS++++M+WNDG+ EN+ C
Sbjct: 119 ENKQDHFKYEGGIQAFVAYLNRKKTPVHQSVFHFSTERDDGISVEVSMQWNDGFQENIYC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + +Y+EK   +KK K S  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGFNKKYKTSATGDDAREGLTAVVSVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+  VE  + + L+ +L E+P +AK +V K++DA+  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKGAVEQMMAEKLTEFLLENPGDAKTVVNKIVDAARAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKGV+D+A LPGKLADC ERDP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGVMDLAGLPGKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRT 418

Query: 516 LL 517
           LL
Sbjct: 419 LL 420


>gi|310781283|gb|ADP24117.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 402

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 207/405 (51%), Positives = 283/405 (69%), Gaps = 3/405 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A 
Sbjct: 1   GSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAV 60

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EV +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+  
Sbjct: 61  EVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPK 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  
Sbjct: 121 TDLEVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDG 179

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI +FV YL+R+K+ L + PI ++   ++  +++ M++ND Y+EN+  F
Sbjct: 180 KE--EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNNDYEVEVCMQYNDSYNENIFSF 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +
Sbjct: 238 ANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKN 297

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR
Sbjct: 298 PQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKAR 357

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           +LTRRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK 
Sbjct: 358 ELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKS 402


>gi|6456476|dbj|BAA86938.1| gyrase B subunit [Vibrio hollisae]
          Length = 420

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 256/422 (60%), Positives = 334/422 (79%), Gaps = 3/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R G++++  +  G+ +
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIWRHGHVHQQIYRMGVPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   ++TGT + F PS + FS   F+YD L  RLRELSFLNS V I LID+R  
Sbjct: 61  KPLEVIGDT-DETGTRIRFWPSDETFSDTTFHYDILAKRLRELSFLNSGVSIKLIDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E +     Y+GGI AFV +L+R+K P+  +    +  R++ +S++++M+WNDG+ EN+ C
Sbjct: 119 ENKHDHFMYEGGIRAFVEHLNRNKTPIHPTVFHFEHEREDGVSVEVSMQWNDGFQENIYC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRAALTRTLNNFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VES + + L+ +L E+P ++KI+  K++DA+  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKSAVESAMGEKLAEFLIENPQDSKIVCSKIIDAARAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 418

Query: 516 LL 517
           LL
Sbjct: 419 LL 420


>gi|88824763|gb|ABD52427.1| gyrase B [Vibrio cholerae]
          Length = 420

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 259/422 (61%), Positives = 331/422 (78%), Gaps = 3/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G     TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVVGETE-RTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E ++    Y+GGI+AFV++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ C
Sbjct: 119 EDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRT 418

Query: 516 LL 517
           LL
Sbjct: 419 LL 420


>gi|295979565|dbj|BAJ07455.1| DNA gyrase subunit B [Photobacterium indicum]
          Length = 393

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 224/395 (56%), Positives = 300/395 (75%), Gaps = 3/395 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  +GLHHM++EV+DN+IDE+L G+ + I +T++ D S +VSD+GRGIPTD+H+EEG+
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIITIHEDNSVSVSDDGRGIPTDIHEEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+I+   + +G
Sbjct: 61  SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRHGSIHHQIYHHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           + D PL   G   + TGT + F PS D F+   F+Y+ L  RLRELSFLNS V I LID+
Sbjct: 121 VPDKPLEAIGET-DKTGTRIRFWPSEDTFTNVVFHYEILAKRLRELSFLNSGVSIRLIDE 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHEN 272
           R  E ++    Y+GGI+AFV +L+R+K P+          R++ IS+++AM+WNDG+ E 
Sbjct: 180 R-EEGKQDHFMYEGGIKAFVEHLNRNKTPIHSKVFHFDFEREDGISVEVAMQWNDGFQEG 238

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           + CFTNNIPQ+DGG+HL+G R ALTR + ++++K   SKK+K S  GDD REG T+V+S+
Sbjct: 239 IYCFTNNIPQRDGGSHLAGFRGALTRTLNTFMDKEGYSKKEKTSTSGDDAREGLTAVVSV 298

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+  VES +N+ LS +L E+P +AKI+  K++DAS  R+AA
Sbjct: 299 KVPDPKFSSQTKDKLVSSEVKPAVESAMNEKLSEFLLENPSDAKIVCSKIIDASRAREAA 358

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           R+AR++TRRKG LD+A LPGKLADC E+DP  SEL
Sbjct: 359 RKAREMTRRKGALDLAGLPGKLADCQEKDPALSEL 393


>gi|83853997|gb|ABC47936.1| gyrase B subunit [Vibrio cholerae O1 biovar El Tor]
          Length = 421

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 260/422 (61%), Positives = 332/422 (78%), Gaps = 3/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+  
Sbjct: 2   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQ 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G     TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I LID+R  
Sbjct: 62  APLAVVGDTE-RTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-E 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E ++    Y+GGI+AFV++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ C
Sbjct: 120 EDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYC 179

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+P
Sbjct: 180 FTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVP 239

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+A
Sbjct: 240 DPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKA 299

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 300 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 359

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 360 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRT 419

Query: 516 LL 517
           LL
Sbjct: 420 LL 421


>gi|83853995|gb|ABC47935.1| gyrase B subunit [Vibrio cholerae O139]
          Length = 421

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 259/422 (61%), Positives = 331/422 (78%), Gaps = 3/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+  
Sbjct: 2   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQ 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G     TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  
Sbjct: 62  APLAVVGETE-RTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-E 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E ++    Y+GGI+AFV++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ C
Sbjct: 120 EDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYC 179

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+P
Sbjct: 180 FTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVP 239

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+A
Sbjct: 240 DPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKA 299

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 300 REMTRRKGALDLAGLPGKLADCREKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 359

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 360 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRT 419

Query: 516 LL 517
           LL
Sbjct: 420 LL 421


>gi|58761295|gb|AAW82362.1| DNA gyrase subunit B [Dehalococcoides sp. WL]
          Length = 441

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/445 (49%), Positives = 300/445 (67%), Gaps = 4/445 (0%)

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           ++DE++ G  D I V +  DGS +V DNGRGIP D+H    ISA E +MT LHAG KF  
Sbjct: 1   SVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHPVTKISALETVMTVLHAGAKFGG 60

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           K+Y+VSGGLHGVG SVVNAL+ W  ++++R G IY+ S+  G    PL   G   + +GT
Sbjct: 61  KTYQVSGGLHGVGASVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEIG-VSDGSGT 119

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
              F   S IFS  +++++ L  RLRE+++LN  +++ + D++S + R      +GGI  
Sbjct: 120 TTIFKADSQIFSTTEYDFEILTDRLREIAYLNKGLEVYIYDEQSDQERTYYF--EGGITG 177

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+R+++   + PI I    D+  +++A+++NDGY ++ L F N +   DGGTHL+G
Sbjct: 178 FVRHLNRNREVRHRQPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTIDGGTHLTG 237

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR    Y  KS   K    +++GDD REG  +++S+K+P+P+F  QTK KL + E
Sbjct: 238 FRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIE 297

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           ++S VES V + LS +LEEHP + K I++K + A+  R+AAR+ARDL  RK  LD  +LP
Sbjct: 298 IKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLP 357

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCSERD    ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A  DKML+ 
Sbjct: 358 GKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAH 417

Query: 472 QEIGTLITALGTGIGQDSFDINKLR 496
           +EI  +ITAL  GI  + FD  KLR
Sbjct: 418 EEIRAIITALAAGI-DNDFDPAKLR 441


>gi|209863986|gb|ACI88910.1| GyrB [Acidithiobacillus thiooxidans]
          Length = 418

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 258/421 (61%), Positives = 325/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+LRI R+G ++  S+ +G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSISLQLRIYRDGFVWTQSYADGAPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT + F PS ++F+   F+++ L  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APIAR-GEASTRHGTIIRFKPSPEVFADTQFHFEILAKRLRELAFLNSGVHITLLDERV- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y GGI AFV +L+R K  +    I + G RD I ++ A++WN+GY+E VLC+
Sbjct: 119 -NREEIFHYHGGIRAFVEHLNRSKTAIHPHVISLAGERDGIVVEAALQWNEGYNETVLCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R+ALTR +  Y+E+     K K SV GDD REG T+VLS+K+PD
Sbjct: 178 TNNIPQNDGGTHLAGFRAALTRTLNQYMEREGTLAKAKVSVTGDDAREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VVES + + L+ +L+EHP EA+ I  K++DA+  R+A R+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKPVVESSMAEALTIFLDEHPKEAQAIAAKIVDAARAREADRKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           +LNVERARFDKMLSS EIGTLITALGTGIG++ F++ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 LLNVERARFDKMLSSDEIGTLITALGTGIGKEDFNLAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148971347|gb|ABR20211.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 268/421 (63%), Positives = 326/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+Q SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   +  G   
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDSLELTIRRDGKIHYQMYRLGNPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   ++TGT+V F PS  IF+   F+YD L  RLRELSFLNS V+I L D R  
Sbjct: 61  EPLTVIG-TTDETGTDVHFTPSPKIFTNTVFHYDLLARRLRELSFLNSGVRIVLRDDRDL 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +        +GGI AFV +L+R+K PL +  I I   ++ +S++LAM+WND Y EN  C+
Sbjct: 120 KE--DVFENQGGIAAFVRHLNRNKTPLHEKVIYISAEKEGVSVELAMQWNDSYQENTFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+GLR+A+TR +  ++E    +KKDK S  GDD REG T+VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLAGLRAAMTRTLNQHIENLALAKKDKISPTGDDAREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES VN+ L  +L+E+P +A++I  K++DA+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVKGIVESIVNERLLDFLQENPSDARVIASKIIDAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +TRRKG LDIA LPGKLADC ERDP   EL+LVEGDSAGGSAKQ R R  QAILPL+GK
Sbjct: 298 GMTRRKGALDIAGLPGKLADCQERDPSLCELYLVEGDSAGGSAKQARDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS E+GTLITALGTGIG+D FDI KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSAEVGTLITALGTGIGKDDFDIKKLRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|117928634|ref|YP_873185.1| DNA topoisomerase IV subunit B [Acidothermus cellulolyticus 11B]
 gi|117649097|gb|ABK53199.1| DNA topoisomerase IV subunit B [Acidothermus cellulolyticus 11B]
          Length = 703

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 224/659 (33%), Positives = 336/659 (50%), Gaps = 56/659 (8%)

Query: 1   MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+      +  +Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E+LDNA+DE+L
Sbjct: 16  MTAQPYAAETDAYTARHLLVLEGLEAVRKRPGMYIGSTDS-RGLMHCVWELLDNAVDEAL 74

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I V +  DGS  V D GRGIP D+  + G++  EV+ T+LHAGGKF   +Y  S
Sbjct: 75  AGYGDAIDVIVYADGSVEVRDTGRGIPVDVEPKTGLTGVEVVFTKLHAGGKFGGGAYGTS 134

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--------LDNPLVVTGS----- 164
           GGLHGVG SVVNAL++ L + + R+G  + MSF  G            P    G      
Sbjct: 135 GGLHGVGASVVNALAARLDVEVDRDGATWTMSFRRGRRGIFDGPGPKAPFRPGGGLAKAR 194

Query: 165 --AGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
                 TGT V F P   IF      + D L  R R+ +FL   + I++ D+ +      
Sbjct: 195 RLPRKVTGTRVRFWPDPQIFLRDARIDLDALIARARQTAFLVPGLAITIRDETTA--YAE 252

Query: 222 TMFYKGGIEAFVSYLDRHK--------------KPLMQSPIRIQGSRDN---------IS 258
           T  + GG + F  YL                         + +   R +         + 
Sbjct: 253 TFRFSGGTKDFADYLAAEAGAQTSVSGTLQLRGTGQFTETVPVLDDRGHSVPQDVIREMV 312

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +D+A+RW+ GY   +  F N +    GG+H++G   A+ + ++     +         ++
Sbjct: 313 VDVALRWDSGYDTVIRSFVNVVATPKGGSHVTGFERAVVKVVSDAARSAR--LVKDEPIV 370

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE----HPLE 374
            DD  EG T+V+S++ P+P+F  QTKE L +     +V   V+ GL A+           
Sbjct: 371 KDDVLEGLTAVVSVRFPEPQFDGQTKEVLGTPAATRIVFDVVSRGLRAFFSSTRRVDRQA 430

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           ++ +++KV+ A+  R A R  ++  RRK  L+ A+LP KLADC   D  ++ELF+VEGDS
Sbjct: 431 SRAVLEKVVAAARTRRALRAHKEAQRRKNALESAALPAKLADCRSTDASRTELFIVEGDS 490

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           A G+AK  R+ E QA+LP+RGKILNV++A    ML++ E   +I  +G G G+  F ++ 
Sbjct: 491 ALGTAKLARNSEFQALLPIRGKILNVQKADLSDMLNNAECAAIIQVIGAGSGRS-FSLDA 549

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           +RY K+IIMTDADVDGAHIR LLLT FFR M  L+  G ++   PPL+ I        V 
Sbjct: 550 VRYGKVIIMTDADVDGAHIRCLLLTLFFRYMRPLLDAGRIFAAVPPLHRIEVSGRKDPVY 609

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                E + +   L  +   +   +      +    +D A   +  +   +    +  +
Sbjct: 610 TYSDAELHRLLADLDRQGIRYKTPQRYKGLGE----MDAAQLAETTMDPAHRVLRRMTL 664



 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 7/172 (4%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
           ++ A  +  I   S +S+         ++      V    +        F      + + 
Sbjct: 528 AECAAIIQVIGAGSGRSFSLDAVRYGKVIIMTDADVDGAHIRCLLLTLFFRYMRPLLDAG 587

Query: 696 RIEENYLTILSLICNGDKIKITGPCSL-LDTIFSI-GRKGI---SMQRYKGLGEMNASQL 750
           RI      +  +  +G K  +       L  + +   R+GI   + QRYKGLGEM+A+QL
Sbjct: 588 RIFAAVPPLHRIEVSGRKDPVYTYSDAELHRLLADLDRQGIRYKTPQRYKGLGEMDAAQL 647

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            ETT++P  R L R+ +TDA+ A+  F  LMG +V PR+EFI   +  + LD
Sbjct: 648 AETTMDPAHRVLRRMTLTDAAAAEAAFELLMGGDVVPRKEFIA--ASAATLD 697


>gi|4894892|gb|AAD32644.1|AF136384_1 gyrase B [Photobacterium damselae subsp. damselae]
          Length = 419

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 328/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   + TGT + F PSS+ F+   F Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLEVIGDT-DRTGTTIRFWPSSETFTNTTFQYEILAKRLRELSFLNSGVSIKLNDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E ++    Y+GGI+AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ EN+ C
Sbjct: 119 EGKQDHFMYEGGIQAFVEHLNRNKTPIHQKVFHFNVEREDGITVEVAMQWNDGFQENIYC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+EK   SKK K +  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRGALTRTLNNYMEKESYSKKAKAATSGDDAREGLTAVISVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VES + + L  +L E+P +AK +  K++DAS  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 418

Query: 516 L 516
           L
Sbjct: 419 L 419


>gi|71034009|ref|XP_766646.1| DNA gyrase subunit B [Theileria parva strain Muguga]
 gi|68353603|gb|EAN34363.1| DNA gyrase subunit B, putative [Theileria parva]
          Length = 905

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 223/674 (33%), Positives = 340/674 (50%), Gaps = 96/674 (14%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           N  Y +D I +L+GL+AV+KRP MYIG+T GE G+H ++YEVLDN++DE L G+ + ITV
Sbjct: 103 NEEYRSDDIIVLEGLNAVRKRPGMYIGNT-GERGVHQLLYEVLDNSVDEYLAGFCNKITV 161

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ----KS--------- 113
           +L  DGS  VSDNGRGIP D+  + G S  E ++T LH+GGKF       S         
Sbjct: 162 SLMNDGSVEVSDNGRGIPCDISPKTGKSGLETVLTVLHSGGKFQDIFPPNSISVKPDDKN 221

Query: 114 -----------------YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
                            Y+ S GLHGVG+SVVNALS +L + + +    Y +    G + 
Sbjct: 222 DSKSSKKGSKELEEKRIYEYSSGLHGVGLSVVNALSEFLIVDVFKGSKSYHIELSKGNIT 281

Query: 157 NPLVVTGSAGNDT---------GTEVTFLPSSDIFSVQDFNY------------------ 189
            PL                   GT + FLP           +                  
Sbjct: 282 KPLTEFSEPETTDQPNPNLKKYGTTIRFLPDYKHIFKTHHQHTETENEENSGTSTDKNDL 341

Query: 190 -------------DTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSY 235
                        D ++ R +ELS+LN  + I L+D + S E         GG  +F+  
Sbjct: 342 DTKCSGCKNGFILDLIKTRAKELSYLNPGLFIKLVDYRISNENNVKLYHNTGGTRSFLEE 401

Query: 236 LDRHKKPLMQSPIR--IQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGL 292
           L + K PL +      I+G  +N++++++  W+ + Y   +  + NN+     GTH+ G 
Sbjct: 402 LIKDKTPLYKPISYITIRGVINNVNVEVSFSWSLESYTALIKAYANNV-STIAGTHIDGF 460

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++++TR +   ++K    + + + + G+  REG T+V+S+K+    F  QTK KL ++ V
Sbjct: 461 KTSITRCVNGLLKKYGYFRGNVKPLNGEFIREGMTAVISVKLTGAEFDGQTKTKLGNALV 520

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++V E  VN+  +  LE +      I  K   A    DAAR A+DL R+K    I+++ G
Sbjct: 521 KTVTEKIVNEQFTNILENNKELLLAIHNKSQAAKKAFDAARSAKDLIRQKSSSLISNISG 580

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF-DKMLSS 471
           KL +CS  + + +ELF+VEG+SA G+AKQ R+R+ QA+LPL+GKILN+E+     K+L +
Sbjct: 581 KLTECSSNNVENNELFIVEGESAAGNAKQARNRQFQAVLPLKGKILNIEKITDNSKVLEN 640

Query: 472 QEIGTLITALGTGIGQDSFDINKL-----------------RYHKIIIMTDADVDGAHIR 514
           Q+I  L+ ++G  I   ++    L                  Y KII++TDADVDG+H++
Sbjct: 641 QQIQLLMNSIGISINPVTWRQKDLIAGTDVALDPFIEMNNSTYGKIILLTDADVDGSHLK 700

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEI 572
           +LLL   +R  PSL  +G +Y+  PPLY IT  R K   Y   +E L   +   +   E 
Sbjct: 701 SLLLCLLYRLCPSLYLHGRVYVASPPLYRITNLRNKKYIYSWSQEHLLRTIKELNSKYEH 760

Query: 573 ELFCDSKGVISKND 586
           +   D         
Sbjct: 761 KETTDGDEEKGDTQ 774


>gi|4894893|gb|AAD32645.1|AF136385_1 gyrase B [Photobacterium leiognathi]
          Length = 419

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 330/421 (78%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGDT-DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E +     Y+GGI+AFV +L+R+K P+          RD  IS+++AM+WNDG+ E++ C
Sbjct: 119 ESKHDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDYGISVEVAMQWNDGFQESIFC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKESYSKKAKAATSGDDAREGLTAVISVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGALDLTGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRT 418

Query: 516 L 516
           L
Sbjct: 419 L 419


>gi|2267070|gb|AAB63500.1| gyrase B subunit [Pseudoalteromonas luteoviolacea]
          Length = 420

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 263/422 (62%), Positives = 334/422 (79%), Gaps = 3/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G +++  +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGQVHQQKYTMGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G A   TGTE+ F PS + FS  +F+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGEAE-STGTELRFWPSPETFSDINFHYDILAKRLRELSFLNSGVSIILTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E ++    Y+GGI+AFV YL+R K P+ QS       R++ IS++++M+WNDG+ EN+  
Sbjct: 119 ENKQDHFKYEGGIQAFVEYLNRKKTPVHQSVFHFTTEREDGISVEVSMQWNDGFQENIYS 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + +Y+EK   +KK+K S  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGFNKKNKTSATGDDAREGLTAVVSVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+  VE  + + L+ +L E+P +AK +V K++DA+  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKGAVEQAMAEKLNEFLLENPQDAKTVVNKIVDAARAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKGV+D+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGVMDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D  KLRYH IIIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHSIIIMTDADVDGSHIRT 418

Query: 516 LL 517
           LL
Sbjct: 419 LL 420


>gi|121608631|ref|YP_996438.1| DNA topoisomerase IV subunit B [Verminephrobacter eiseniae EF01-2]
 gi|121553271|gb|ABM57420.1| DNA topoisomerase IV subunit B [Verminephrobacter eiseniae EF01-2]
          Length = 661

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 207/584 (35%), Positives = 304/584 (52%), Gaps = 27/584 (4%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y   SI++LKGL+ V++RP MY   T  ++ L H+  EVLDNA DE+L GY   I VTL+
Sbjct: 14  YSEGSIRVLKGLEPVRQRPGMY---TRTDNPL-HITQEVLDNAADEALAGYGKKIKVTLH 69

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLHGVGVS 126
           +DGS +V D+GRGIP  +H EE     E++ TRLHAGGKF++    +Y  SGGLHGVGVS
Sbjct: 70  IDGSVSVEDDGRGIPFGMHPEEKAPVIELVFTRLHAGGKFDKGQGGAYSFSGGLHGVGVS 129

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTEVTFLPSSDIFSV 184
           V NAL++ L+    REG +  + F  G +  PL     A  +   GT V   P +  F  
Sbjct: 130 VTNALTTRLEATSHREGQLARLVFSGGAVIEPLRTRPLASGERRQGTTVRLWPDAQYFES 189

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK--P 242
                  L   LR  + L   + +SL+++++ + +      +GG+  +++         P
Sbjct: 190 CALPMGPLCQLLRSKAVLMPGLCVSLLNEKTRDTQTWQY--QGGLRDYLAQNLSADPVIP 247

Query: 243 LMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           L +      GS ++          + + +        + N IP   GGTH SGLR  L  
Sbjct: 248 LFEGAAFADGSHESFAEGEGAAWCLAFTEDGPPIRESYVNLIPTSAGGTHESGLRDGLFN 307

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + S++E           ++ +D     + VLS K+ DP+F  Q KE+L S +   +V  
Sbjct: 308 AVKSFIELH-SLLPKGVKLLPEDMFARASYVLSAKVLDPQFQGQIKERLNSRDAVRLVSG 366

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
           FV   L  WL +H    K + +    A       ++A     ++    +A LPGKL DC 
Sbjct: 367 FVRPALELWLNQHVEYGKKLAE---LAIKAAQTRQKAGQKVEKRKGSGVAVLPGKLTDCE 423

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RD   +E+FLVEGDSAGGSAK GR +E+QAILPLRGK+LN      D++ ++ EI  + 
Sbjct: 424 SRDTAHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFANNEIHDIS 483

Query: 479 TALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
            A+G          +   LRY K+ I++DADVDGAHI+ LLLT FFR  P LI  G +Y+
Sbjct: 484 VAIGVDPHGPDDRPDLTGLRYGKVCILSDADVDGAHIQVLLLTLFFRHFPQLIATGHIYV 543

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +PPL+ +      +    + + + Y ++      I   C  +G
Sbjct: 544 ARPPLFRVDVPARGK----KPAAKMYALDAGELAAILDKCAKEG 583



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 8/91 (8%)

Query: 721 SLLDTIFSIGRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQA 773
            L   +    ++G+      + R+KGLGEMNA QLWETTLNPDTR LL V++   D S  
Sbjct: 571 ELAAILDKCAKEGLAREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGALDFSAT 630

Query: 774 DDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           + L ++LMG  E   RRE ++ +     +DI
Sbjct: 631 EGLITKLMGKGEAAARRELMELHGDAVEIDI 661


>gi|121604106|ref|YP_981435.1| DNA topoisomerase IV subunit B [Polaromonas naphthalenivorans CJ2]
 gi|120593075|gb|ABM36514.1| DNA topoisomerase IV subunit B [Polaromonas naphthalenivorans CJ2]
          Length = 659

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 214/615 (34%), Positives = 311/615 (50%), Gaps = 36/615 (5%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M++     + +Y   SI++LKGL+ VK+RP MY   T  ++ L H+I EVLDN+ DE+L 
Sbjct: 1   MAEKNITASPAYSESSIRVLKGLEPVKQRPGMY---TRTDNPL-HIIQEVLDNSADEALA 56

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYK 115
           G+   I VTL+ DGS ++ D+GRGIP  LH EE     E++ TRLHA     K    +Y 
Sbjct: 57  GHGKKIKVTLHTDGSVSIEDDGRGIPFGLHPEEKAPVVELVFTRLHAGGKFDKGKGGAYS 116

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP--LVVTGSAGNDTGTEV 173
            SGGLHGVGVSV NALS+ L++   REG +  ++F  G +  P  L   G+    +GT V
Sbjct: 117 FSGGLHGVGVSVTNALSTRLEVTSYREGKVASLAFSGGDVIEPLVLRPNGNGDRKSGTTV 176

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
              P +  F         L H LR  + L   V ++L ++++ E +  T  YKGG+  ++
Sbjct: 177 RAWPDAKYFESPALPMAELTHLLRSKAVLMPGVTVTLTNEKTKEVQ--TWLYKGGLRDYL 234

Query: 234 SYLDRHKK--PLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                     P+ +       + +           + + +        + N IP   GGT
Sbjct: 235 MQTLTADPVIPMFEEEGFADAAHETFAEGEGASWCVAFTEDGQPVRESYVNLIPTSAGGT 294

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H SGLR  L   + S++E           ++ +D     + VLS K+ DP+F  Q KE+L
Sbjct: 295 HESGLRDGLFTAVKSFIELH-SLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERL 353

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S +   +V SFV   L  WL +H    K + +  + A+  R  A +      ++    +
Sbjct: 354 NSRDAVRLVSSFVRPALELWLNQHVDYGKKLAELAIKAAQSRQKAGQK---VEKRKGSGV 410

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC  +D   +E+FLVEGDSAGGSAK GR +ENQA+LPLRGK+LN      D+
Sbjct: 411 AVLPGKLTDCESKDLANNEVFLVEGDSAGGSAKMGRDKENQAVLPLRGKVLNTWEVDRDR 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           + ++ EI  +  A+G      +   +   LRY K+ I++DADVDG+HI+ LLLT FFR  
Sbjct: 471 LFANTEIHDISVAIGVDPHGPNDTPDLSALRYGKVCILSDADVDGSHIQVLLLTLFFRHF 530

Query: 526 PSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----EEIEL 574
           P LI  G +Y+ +PPLY +       +  S  Y  DE  L   L                
Sbjct: 531 PKLIETGHVYVARPPLYRVDAPARGKKPASKVYALDEGELTAILDKLRKDGVRENAWSIS 590

Query: 575 FCDSKGVISKNDLRN 589
                G +S   L +
Sbjct: 591 RFKGLGEMSAEQLWD 605



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQAD 774
             ++LD +   G      S+ R+KGLGEM+A QLW+TTLNPDTR L+ V++   D  Q +
Sbjct: 570 LTAILDKLRKDGVRENAWSISRFKGLGEMSAEQLWDTTLNPDTRRLMPVQLGNQDFGQTE 629

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            L ++LMG  E   RRE ++ +     +D+
Sbjct: 630 SLITKLMGKGEAAARRELMELHGDAVEIDV 659


>gi|332529075|ref|ZP_08405040.1| DNA topoisomerase IV subunit B [Hylemonella gracilis ATCC 19624]
 gi|332041519|gb|EGI77880.1| DNA topoisomerase IV subunit B [Hylemonella gracilis ATCC 19624]
          Length = 660

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 213/603 (35%), Positives = 307/603 (50%), Gaps = 36/603 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y   SI++LKGL+ V++RP MY   T  ++ L H+I EVLDNA DE+L G+
Sbjct: 1   MATK-PTPEYSEGSIRVLKGLEPVQQRPGMY---TRTDNPL-HIIQEVLDNAADEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
              I V L+ DGS +V D+GRGIP  LH EE +   E++ TRLHAGGKF++ S   Y  S
Sbjct: 56  GKRIAVILHADGSVSVEDDGRGIPHGLHPEEKVPVIEIVYTRLHAGGKFDKGSGGAYSFS 115

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL--VVTGSAGNDTGTEVTF 175
           GGLHGVGVSV NAL+  L++   REG +  M+F  G ++  L      S    +GT V  
Sbjct: 116 GGLHGVGVSVTNALAKRLEVMSYREGQVATMAFAGGAVEEKLRARAQKSEDRKSGTTVRV 175

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---PREITMFYKGGIEAF 232
            P +  F         L H LR  + L   V ++L  ++  +       T  YKGG+  +
Sbjct: 176 WPDAKYFESAALPMGELTHLLRSKAVLMPGVTVTLTVEKGKDGKASDTQTWLYKGGLRDY 235

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNI---------SIDLAMRWNDGYHENVLCFTNNIPQK 283
           +                 +G    +             A+ + +        + N IP  
Sbjct: 236 LMQTLTAD----PVIPLFEGEGYAVDNDSFAEGEGAAWAVAFTEDGAPVRESYVNLIPTS 291

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L   + S+++           ++ +D     + VLS K+ DP+F  Q 
Sbjct: 292 AGGTHDSGLRDGLFNAVKSFIDLH-SLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQI 350

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SFV   L  WL +H    K + +    A       +RA     +K 
Sbjct: 351 KERLNSRDAVRLVSSFVRPALELWLNQHVEYGKKLAE---LAIRAAQTRQRAGQKVEKKK 407

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC  +D   +ELFLVEGDSAGGSAK GR +E+QAILPLRGK+LN    
Sbjct: 408 GSGVAVLPGKLTDCESKDLAHNELFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEV 467

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT F
Sbjct: 468 ERDRLFANTEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLF 527

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           FR  P LI  G +Y+ +PPL+ +      +    + + + Y +++     I      +GV
Sbjct: 528 FRHFPKLIETGHVYVARPPLFRVDVPARGK----KPASKAYALDEGELTAILDKTAKEGV 583

Query: 582 ISK 584
             +
Sbjct: 584 AKE 586



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 8/91 (8%)

Query: 721 SLLDTIFSIGRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQA 773
            L   +    ++G+      + R+KGLGEMNA QLWETTLNPDTR LL+V++   D  Q 
Sbjct: 570 ELTAILDKTAKEGVAKERCQISRFKGLGEMNAEQLWETTLNPDTRRLLQVQLGGYDTRQT 629

Query: 774 DDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           +   ++LMG  E   RRE ++ +     +D+
Sbjct: 630 EGEITKLMGKGEAAARRELMELHGDSVEIDV 660


>gi|310781211|gb|ADP24081.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 206/400 (51%), Positives = 278/400 (69%), Gaps = 3/400 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L
Sbjct: 61  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 121 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NN
Sbjct: 179 -EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 238 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 298 EGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 397


>gi|227496000|ref|ZP_03926311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226834488|gb|EEH66871.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 746

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 240/717 (33%), Positives = 350/717 (48%), Gaps = 105/717 (14%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D   +SSY A  + +L+GL+AV+KRP MYIG TD + GL H ++E++DN++DE+LEGY
Sbjct: 1   MAD--SSSSYSARHLSVLEGLEAVRKRPGMYIGSTD-QRGLMHCVWEIIDNSVDEALEGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VT++ DGS  V DNGRG+P D+    G++  E++ T+LHAGGKF   SY  +GGL
Sbjct: 58  GDSIAVTVHEDGSIEVRDNGRGVPVDVEPGSGLTGVELVYTKLHAGGKFGGGSYGAAGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL----------------------DNP 158
           HGVG SVVNALS  + + + R G  Y MSF  G+                        + 
Sbjct: 118 HGVGASVVNALSERMDVAVDRGGKTYAMSFHRGVPGVFDDPDPAHPRPDTPFTEYTEASE 177

Query: 159 LVVTGSAGN-DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           L V G      +GT V +     IF    +++   L+ RLR+ SFL   + ++L D+RS 
Sbjct: 178 LRVIGKVKRGVSGTRVRYWADPQIFPRPSEYDAAALRARLRQTSFLVPGLSLTLTDERSA 237

Query: 217 EPRE--------------------------------------------ITMFYKGGIEAF 232
           E                                                    KGG   F
Sbjct: 238 EEAARAEKAAPSGSGAAGDDPALRASAKNATEEASDLFASQTQAPEGSEVFLAKGGTRDF 297

Query: 233 VSYLDRHKKPLMQSPIRIQGS--------------------RDNISIDLAMRWNDGYHEN 272
           V +L           +  +G+                        S+D+A+RW  GY   
Sbjct: 298 VDFLATDASVTDTFRLTGEGTYTETVQQLDKKSGHLRPVEVERTCSVDVALRWGIGYDTI 357

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS---KKDKRSVIGDDCREGFTSV 329
              F N I    GGTHL+G   A+T+ +   ++ +  +         +  DD   G T+V
Sbjct: 358 ERSFVNIIATPMGGTHLTGFEQAVTKVLRKQIDSNARALKVTARDGKIEKDDILAGMTAV 417

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDA 385
           +++++P+P+F  QTKE L ++ VR +V   V   L+A L     + K     + +KV+  
Sbjct: 418 VTVRVPEPQFEGQTKEVLGTAPVRQIVAKVVEKELTALLTSSKRDLKTQSRALQEKVVGE 477

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
              R +AR  +++TRRK  L+ ++LP KLADC   D   SELF+VEGDSA G+AK  R+ 
Sbjct: 478 MRARISARMHKEITRRKTALETSTLPAKLADCRSDDVAASELFIVEGDSALGTAKNARNS 537

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LP+RGKILNV++A    ML + E   +I  +G G G+  FD++  RY K+I+MTD
Sbjct: 538 EFQALLPIRGKILNVQKASQADMLRNAECSAIIQVVGAGSGRT-FDLDSARYGKVILMTD 596

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI------TRGKSLQYVKDEESL 559
           ADVDGAHIRTLLLT FFR M  +I  G +Y   PPL+ I       R K + Y   ++ L
Sbjct: 597 ADVDGAHIRTLLLTLFFRYMRPMIEAGRVYAAVPPLHRIEVSAQGRRKKEVIYTYSDDEL 656

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
              L                  + + D     +  ++ +          D+  + +A
Sbjct: 657 VRTLRKLEKQGRSFKEPQRYKGLGEMDAHQLAETTMEPEHRTLRRITLGDEAELLEA 713



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 6/95 (6%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLR 764
               + I       L+ T+  + ++G S    QRYKGLGEM+A QL ETT+ P+ R+L R
Sbjct: 642 RRKKEVIYTYSDDELVRTLRKLEKQGRSFKEPQRYKGLGEMDAHQLAETTMEPEHRTLRR 701

Query: 765 VKITDAS---QADDLFSRLMGDEVEPRREFIQENS 796
           + + D +   +A+++F  LMG  VEPRR+FI E +
Sbjct: 702 ITLGDEAELLEAENVFELLMGSSVEPRRDFIVEGA 736


>gi|157683635|gb|ABV64549.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 419

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 261/422 (61%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQ ILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQGILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|332527922|ref|ZP_08403956.1| DNA topoisomerase IV subunit B [Rubrivivax benzoatilyticus JA2]
 gi|332112496|gb|EGJ12289.1| DNA topoisomerase IV subunit B [Rubrivivax benzoatilyticus JA2]
          Length = 657

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 213/603 (35%), Positives = 307/603 (50%), Gaps = 39/603 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I+  SY   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L G+
Sbjct: 1   MA--IKQGSYAEASIRVLKGLEPVKQRPGMY---TRTDNPL-HVVQEVIDNAADEALAGF 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
              I VTL+ DGS  V D+GRGIP  LH EE +   E++ TRLHAGGKF++ S   Y  S
Sbjct: 55  GKRIAVTLHADGSVAVEDDGRGIPFGLHPEEQVPVLEIVYTRLHAGGKFDKGSGGAYSFS 114

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG--NDTGTEVT 174
           GGLHGVGVSV NAL++ L++ + REG    ++F N G +  PL V  +       GT V 
Sbjct: 115 GGLHGVGVSVTNALATRLEVTVWREGQCATLAFGNGGEVIEPLAVRKATSSERRHGTRVR 174

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV- 233
             P    F   +     L H LR  + L   V ++L  +++ E +      + G+  ++ 
Sbjct: 175 VWPDPKYFESPELPRGELLHLLRSKAVLMPGVTVTLATEKTGETQTWRY--ESGLRDYLL 232

Query: 234 ----------SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
                      +         ++    +G      +     + D        + N IP  
Sbjct: 233 QSLAAEPLIPLFEGAQYAAANETESFAEGEGAAWCV----AFTDEGTTLRESYVNLIPTV 288

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGL+  L + +  ++E           ++ +D     + VLS K+ DP+F  Q 
Sbjct: 289 AGGTHESGLKDGLFQAVKGFIELHA-LLPKGVKLMPEDVFSRASFVLSAKVLDPQFQGQI 347

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SFV   L  WL +H    K + + V+  +  R  A +      +K 
Sbjct: 348 KERLNSRDALKLVASFVRPALEIWLNQHVEFGKKLAELVIRQAQTRQRAGQK---VEKKK 404

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC  RD   +E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 405 GSGVAVLPGKLTDCESRDLSLNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNSWEV 464

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D +  + EI  +  ALG      + + +   LRY K+ I++DADVDG+HI+ LLLT F
Sbjct: 465 ERDLLFKNNEIHDISVALGVDPHGPADEPDLSGLRYGKVCILSDADVDGSHIQVLLLTLF 524

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           FR  P LI  G +Y+ +PPLY I      +      + + Y ++    E        +G 
Sbjct: 525 FRHFPKLIERGHVYVARPPLYRIDAPARGK----RPAAKLYALDDGELEAALDKLRKEGA 580

Query: 582 ISK 584
              
Sbjct: 581 REG 583



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 13/94 (13%)

Query: 719 PCSLLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA--- 773
             + LD +   G +    ++ R+KGLGEMNA QLW+TTLNP+TR LL V    A  A   
Sbjct: 568 LEAALDKLRKEGAREGSWTISRFKGLGEMNAEQLWDTTLNPETRRLLPV----AFGAPGL 623

Query: 774 D---DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           D   +LF+RLMG  E + RR+ ++  +    +D+
Sbjct: 624 DNTVELFTRLMGKGEAQARRDLMELRADAVEIDV 657


>gi|310781009|gb|ADP23980.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 402

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 207/405 (51%), Positives = 279/405 (68%), Gaps = 3/405 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A 
Sbjct: 1   GSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAV 60

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EV +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+  
Sbjct: 61  EVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPK 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  
Sbjct: 121 TDLEVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDG 179

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F
Sbjct: 180 KE--EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSF 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +
Sbjct: 238 ANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKN 297

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR
Sbjct: 298 PQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKAR 357

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           +LTRRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK 
Sbjct: 358 ELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKS 402


>gi|114775359|ref|ZP_01450927.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
 gi|114553470|gb|EAU55851.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
          Length = 1441

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 201/559 (35%), Positives = 303/559 (54%), Gaps = 14/559 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++ YD DSI+ L G+  ++ RP+MY  DT  E G HH+  EVLDN  DE++ G+   I V
Sbjct: 25  SADYDIDSIKDLDGIAHIQLRPNMY-SDTSKELGCHHIAQEVLDNCGDEAIGGFCSRIVV 83

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  D   +++DNGRGIP   +   G+S  E+++++  AGGKF+  +YKVSGGLHGVG++
Sbjct: 84  ELESDNVISITDNGRGIPVKENA-AGMSGVELVLSKDKAGGKFDHDAYKVSGGLHGVGIT 142

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQ 185
           V NALSSWL+  +KR+G  + M F NG   + L   G+ G  T GT++ F P+   +   
Sbjct: 143 VTNALSSWLEATVKRDGGEFTMRFENGRAVDKLKQVGTVGPRTHGTQIRFSPNPKYYESP 202

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F    ++ +  + + L   +++        +       +K G+  F++           
Sbjct: 203 KFRVQQVRQQAMDKAILIPGLEVIFKAPGLAD---ERFCFKNGLSEFMTSQMEGTPVFEF 259

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       + +        + +     V  + N IP   GGTH  G ++ L + +  Y++
Sbjct: 260 TGQLGDMEKVHWHFA---SFEEAIPVYVRSYANTIPTPLGGTHEKGFQAGLIKAVREYID 316

Query: 306 ---KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
              +   +      +   D        LS+ + D  F  QTK++L S+E    V   ++D
Sbjct: 317 MRPELKKALGRSTRIAPSDVMANSQLGLSVYIQDISFKGQTKQELTSAEASKFVGGVIHD 376

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR-DLTRRKGVLDIASLPGKLADCSERD 421
             + WL      +   VK ++D +  R AA   +     RK       LPGKL DC   D
Sbjct: 377 SATLWLNRDAELSDAWVKLIIDRAAARAAAENGKAKKVDRKTFTGRTPLPGKLLDCRSND 436

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            + +EL+LVEGDSAGGSAKQ   R+ QAI PL+GKILN E    +   +S+ +  LITA+
Sbjct: 437 IEHTELYLVEGDSAGGSAKQANDRDLQAIFPLKGKILNCEGVTSEDASNSEAVADLITAI 496

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           GTGIG+   DI K RY KI++MTDAD+DG+HI+TLL TFF+RQM  ++  G +YI++PPL
Sbjct: 497 GTGIGEHC-DIEKRRYGKIVVMTDADIDGSHIQTLLFTFFWRQMRPMVEAGRVYIVQPPL 555

Query: 542 YGITRGKSLQYVKDEESLE 560
           YG+T GK   Y + E+ L+
Sbjct: 556 YGVTIGKQKHYAQSEDELD 574



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 4/173 (2%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + NCE     + S +  +A+ +  I     +           +V      +    +    
Sbjct: 472 ILNCEGVTSEDASNSEAVADLITAIGTGIGEHCDIEKRRYGKIVVMTDADIDGSHIQTLL 531

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL--LDTI-FSIGRKGISMQ 737
             F +      + + R+      +  +     K        L  L  +  + G+K   + 
Sbjct: 532 FTFFWRQMRPMVEAGRVYIVQPPLYGVTIGKQKHYAQSEDELDGLKAMALAEGKKIEYI- 590

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790
           RYKGLGEMN  +L ET ++ + R L++V   DA + D L ++LMGD+   RR+
Sbjct: 591 RYKGLGEMNPPELKETCMDYENRVLVQVSPEDARRMDALMTKLMGDDAGQRRD 643


>gi|330951451|gb|EGH51711.1| DNA topoisomerase IV subunit B [Pseudomonas syringae Cit 7]
          Length = 595

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 212/601 (35%), Positives = 306/601 (50%), Gaps = 9/601 (1%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
            EV+DN++DE+L G+A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHA
Sbjct: 2   QEVIDNSVDEALAGHARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHA 61

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+ K+Y+ SGGLHGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+ 
Sbjct: 62  GGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTV 121

Query: 166 -GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              +TGT V F P    F    F+   L+H L+  + L   + +S  DK S E  E    
Sbjct: 122 GKRNTGTSVYFAPDPKYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYE 181

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
                    S  +  + P         G+++ +     +   +G       + N IP   
Sbjct: 182 DGLRSYLQDSVTEFLRLPDEPFCGSFTGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQ 240

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++GLR  L   +  + E      +    +  +D  E    VLS+KM +P+FS QTK
Sbjct: 241 GGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTK 299

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L S E  + V   V D  S WL  H      +    ++ +       +A     RK +
Sbjct: 300 ERLSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRI 356

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
               +LPGKLADC+ +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN     
Sbjct: 357 TQGPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVD 416

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
             ++L+SQE+  +  A+G   G    DI++LRY KI I+ DAD DG HI TLL   F + 
Sbjct: 417 GGEVLASQEVHNIAVAIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQH 474

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
              L+  G +Y+  PPLY I  GK + Y  DE   +  L      ++      ++     
Sbjct: 475 FRPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLG 534

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                 + +   +D   +         F   + +  +   +       S      N    
Sbjct: 535 EMNPPQLRE-TTMDPNTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEV 593

Query: 645 I 645
           +
Sbjct: 594 L 594



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 512 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 571

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 572 LAKKRAGD----RKSWLES 586


>gi|152968547|gb|ABS50288.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|157683593|gb|ABV64528.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683609|gb|ABV64536.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683643|gb|ABV64553.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 419

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 262/422 (62%), Positives = 330/422 (78%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGSLDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|194339077|gb|ACF49454.1| GyrB [Amycolatopsis jejuensis]
          Length = 436

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 192/438 (43%), Positives = 273/438 (62%), Gaps = 15/438 (3%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           ++ EV+DN++DE++ GYA  + VTL  DG   V D+GRGIP D+H +E     EV++T L
Sbjct: 1   LVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPKEQKPTLEVVLTIL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SY VSGGLHGVGVSVVNALS+ L   +K  G  +   + + +   PL   G
Sbjct: 61  HAGGKFDSDSYAVSGGLHGVGVSVVNALSTTLLAEVKYAGRSWRQEYTDQVP-GPLEDLG 119

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT- 222
            A  +TGT +TF    +IF    +N++T+  RL+E++FLN  + +SL D+R  +      
Sbjct: 120 PAT-ETGTTITFWADDNIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVSDEETEED 178

Query: 223 ------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                         Y GG+E FV +++  K P+  S I        + +++AM+WN G+ 
Sbjct: 179 AEGKQARVKEKVYCYPGGLEDFVKHINGSKDPIHASVISFDAKGTGLEVEVAMQWNTGFT 238

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
            +V  F N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +++
Sbjct: 239 PSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAAIV 298

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SIK+ +P+F  QTK KL +SE ++ V+   N+ L  W E +P EAK I+ K + ++  R 
Sbjct: 299 SIKLAEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSAQARL 358

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+ARDL RRKG L+I  LPGKL DC   DP + EL++VEGDSAGGSAK+GR    QAI
Sbjct: 359 AARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQAI 418

Query: 451 LPLRGKILNVERARFDKM 468
           LP+RGKI+NVE+AR D++
Sbjct: 419 LPIRGKIINVEKARIDRV 436


>gi|149787396|gb|ABR29846.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|152968549|gb|ABS50289.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|152968551|gb|ABS50290.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|152968555|gb|ABS50292.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|152968557|gb|ABS50293.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|152968559|gb|ABS50294.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|152968561|gb|ABS50295.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|157683577|gb|ABV64520.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683579|gb|ABV64521.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683581|gb|ABV64522.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683583|gb|ABV64523.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683585|gb|ABV64524.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683587|gb|ABV64525.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683589|gb|ABV64526.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683591|gb|ABV64527.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683595|gb|ABV64529.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683597|gb|ABV64530.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683599|gb|ABV64531.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683601|gb|ABV64532.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683603|gb|ABV64533.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683611|gb|ABV64537.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683613|gb|ABV64538.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683615|gb|ABV64539.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683617|gb|ABV64540.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683619|gb|ABV64541.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683623|gb|ABV64543.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683625|gb|ABV64544.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683627|gb|ABV64545.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|157683629|gb|ABV64546.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|157683631|gb|ABV64547.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|157683633|gb|ABV64548.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|157683637|gb|ABV64550.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|157683641|gb|ABV64552.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 419

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 262/422 (62%), Positives = 330/422 (78%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|310780999|gb|ADP23975.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 400

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 206/403 (51%), Positives = 278/403 (68%), Gaps = 3/403 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A 
Sbjct: 1   GSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAV 60

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EV +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+  
Sbjct: 61  EVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPK 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  
Sbjct: 121 TDLEVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDG 179

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F
Sbjct: 180 KE--EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSF 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +
Sbjct: 238 ANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKN 297

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR
Sbjct: 298 PQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKAR 357

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +LTRRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 ELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 400


>gi|152968563|gb|ABS50296.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|157683605|gb|ABV64534.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
          Length = 419

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 261/422 (61%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++D +  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDPARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|161898000|gb|ABX80109.1| DNA gyrase subunit B [Streptomyces caelestis]
          Length = 485

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 229/488 (46%), Positives = 317/488 (64%), Gaps = 22/488 (4%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIG T GE GLHH++YEV+DN++DE+L G+AD I VT+  DG   V DNGRGIP  +
Sbjct: 1   PGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGI 59

Query: 88  HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
              EG  A EV++T LHAGGKF    Y VSGGLHGVGVSVVNALSS + + +K +G+ + 
Sbjct: 60  VPSEGKPALEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSSKVTVEVKTDGHRWT 119

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
             +  G+   PL V   A  +TGT VTF    DIF   +++++TL  R +E++FLN  + 
Sbjct: 120 QDYKMGVPTAPL-VQHEATEETGTSVTFWADPDIFETTEYSFETLSRRFQEMAFLNKGLT 178

Query: 208 ISLIDKR----------------SPEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRI 250
           I L D+R                + + + +T  Y+GGI  FV Y   R  + +  + I +
Sbjct: 179 IRLTDERESAKATSGADEAGADETADVKTVTYHYEGGIVDFVKYLNSRKGEAVHPTVIDL 238

Query: 251 QGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
           +        S+++AM+WN GY E V  F N I   +GGTH  G R+ALT  I  Y     
Sbjct: 239 EAEDKDRQFSLEVAMQWNSGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKR 298

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             ++   ++ GDD REG T+++S+K+ +P+F  QTK KL ++E+++ V+  V + L+ WL
Sbjct: 299 LLREKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKLGNTEIKTFVQRVVYEHLNDWL 358

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           + +P EA  I++K + A+  R AAR+ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F
Sbjct: 359 DRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPIKCEIF 418

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D++L +QEI  +I+A GTG+ +D
Sbjct: 419 IVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHED 478

Query: 489 SFDINKLR 496
            FDI KLR
Sbjct: 479 -FDIEKLR 485


>gi|149787399|gb|ABR29847.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 418

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 261/421 (61%), Positives = 329/421 (78%), Gaps = 4/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 L 516
           L
Sbjct: 418 L 418


>gi|327335539|gb|AEA49948.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 416

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 261/419 (62%), Positives = 324/419 (77%), Gaps = 3/419 (0%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++
Sbjct: 1   EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL 210
             G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L
Sbjct: 61  HLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRL 119

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
           +D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y 
Sbjct: 120 LDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQ 177

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+
Sbjct: 178 EGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVI 237

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+
Sbjct: 238 SVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARARE 297

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAI
Sbjct: 298 AARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAI 357

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           LPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 358 LPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 416


>gi|327335537|gb|AEA49947.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 416

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 261/419 (62%), Positives = 324/419 (77%), Gaps = 3/419 (0%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++
Sbjct: 1   EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL 210
             G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L
Sbjct: 61  HLGEPQAPLKQIGDSA-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRL 119

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
           +D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y 
Sbjct: 120 LDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQ 177

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+
Sbjct: 178 EGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVI 237

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+
Sbjct: 238 SVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARARE 297

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAI
Sbjct: 298 AARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAI 357

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           LPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 358 LPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 416


>gi|2267072|gb|AAB63501.1| gyrase B subunit [Pseudoalteromonas nigrifaciens]
          Length = 423

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 264/425 (62%), Positives = 332/425 (78%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG ++E ++ +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYSHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL + G A + TGTE+ F PS   F+  DF+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLALIGDA-DTTGTELRFWPSDQTFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     Y+GGI AFV YL+R+K P+ +           D I ++++M+WND Y EN+ 
Sbjct: 119 ENKSDHFKYEGGIRAFVEYLNRNKTPIHKGVFHFTHTREEDGIVVEVSMQWNDAYQENIY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSI 332
           CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VE  + +  + +L EHP +AKI+V K++DAS  R+AA
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTDADVDG+H
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSH 418

Query: 513 IRTLL 517
           IRTLL
Sbjct: 419 IRTLL 423


>gi|229820414|ref|YP_002881940.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
 gi|229566327|gb|ACQ80178.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
          Length = 708

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 234/671 (34%), Positives = 339/671 (50%), Gaps = 60/671 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S+Y A  + +L+GL+AV+KRP MYIG TD   GL H ++E++DN++DE+L G+
Sbjct: 1   MTTAAPESTYTARHLSVLEGLEAVRKRPGMYIGSTDS-RGLMHCVWEIIDNSVDEALGGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I + L+ D S  V D+GRGIP D  +  G+S  EV+ T+LHAGGKF   SY  SGGL
Sbjct: 60  GEAIDIVLHPDSSVEVRDSGRGIPVDTVERLGLSGVEVVFTKLHAGGKFGGSSYGSSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLV 160
           HGVG SVVNALS+ L + + R G  Y M+F  G                       + L 
Sbjct: 120 HGVGASVVNALSARLDVEVDRAGKTYRMTFRRGEPGTFDDGAVPSPEAPFAPFTDHSELA 179

Query: 161 VTGSAGN-DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKR---- 214
           V        TGT V +     IF     F YD L  R R+ +FL   + I++ D+R    
Sbjct: 180 VVAKVPRGRTGTRVRYWADRQIFPVSAAFAYDELLTRARQTAFLVPGLSITVRDERRLPG 239

Query: 215 ---SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------ 253
                   E    Y GG+  F  YL           +R   +                  
Sbjct: 240 TPGEGGVVEEVFRYDGGVRDFADYLSPDASVTDTWLLRGSDTFTESIQALDDAGHLRAQE 299

Query: 254 -RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS-- 310
                 +D+A+RW  GY   V  F N I    GG+HL+G    L + +   VE +     
Sbjct: 300 VERTCEVDVALRWGIGYETEVRSFVNIIATPKGGSHLAGFEQGLLKTVRKQVEVNARRLK 359

Query: 311 ---KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K  K  +  DD   G T+V+++++P+P+F  QTKE L ++ VR++V   V   L+A 
Sbjct: 360 LTGKNGKERIEKDDVMAGLTAVVTVRLPEPQFEGQTKEVLGTAPVRAIVARVVERELTAL 419

Query: 368 LEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L       K     ++ KV+D    R AAR  ++++RRK  L+ +SLP KLADC   D  
Sbjct: 420 LTSTKRGEKTQAAAVLDKVVDEMRARVAARTHKEISRRKNALETSSLPAKLADCRSDDVD 479

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           +SELF+VEGDSA G+AK  R  + QA+LP+RGKILNV++A    ML + E   +I  LG 
Sbjct: 480 RSELFIVEGDSALGTAKLARDSDFQALLPIRGKILNVQKASLADMLKNLECAAIIQVLGA 539

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G G+  F++   RY ++++MTDADVDGAHIRTLLLT FFR M  L+  G ++   PPL+ 
Sbjct: 540 GSGRT-FELEAARYGRVVLMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVFAAVPPLHR 598

Query: 544 ITRGKS-LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           +    S  +  +   +  +  + Q L++  +     K  I +      +D     +  + 
Sbjct: 599 VEISGSGGRKPEVVYTYSESELRQLLAKLEKSGRRYKQPIQRYKGLGEMDAHQLAETTMD 658

Query: 603 DFYPNHDKTFI 613
             +    K  +
Sbjct: 659 PAHRTLRKIRL 669



 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 57/87 (65%), Gaps = 3/87 (3%)

Query: 717 TGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           +    LL  +   GR+    +QRYKGLGEM+A QL ETT++P  R+L +++++D  +A+ 
Sbjct: 618 SELRQLLAKLEKSGRRYKQPIQRYKGLGEMDAHQLAETTMDPAHRTLRKIRLSDLERAEQ 677

Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802
           +F  LMG++V PR++F+   +  + LD
Sbjct: 678 VFELLMGNDVAPRKDFLVAGA--AELD 702


>gi|157683567|gb|ABV64515.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|157683571|gb|ABV64517.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|157683573|gb|ABV64518.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 419

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 263/422 (62%), Positives = 330/422 (78%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I I++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|332361149|gb|EGJ38953.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK1056]
          Length = 415

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 186/416 (44%), Positives = 268/416 (64%), Gaps = 10/416 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MAKKKININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV+D+GRG+P   H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    +GT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF Y+T+  RL+E +FL  +V++SL D R+ E   +   Y+ G+E FVSYL+
Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G      + +A+++NDGY +N+L F NN+  KDGGTH +GL++A+T
Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R  
Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARPA 355

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S V++ L+ +L E+   A  +++K + A   R+AAR+ARD +R    +      
Sbjct: 356 VDSIVSEKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKIKKIRAC 411


>gi|2267060|gb|AAB63495.1| gyrase B subunit [Pseudoalteromonas aurantia]
          Length = 420

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 261/422 (61%), Positives = 333/422 (78%), Gaps = 3/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G +++  +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVHQQKYTMGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G A   TGTE+ F PS++ FS  +F+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLGVIGEAE-STGTELRFWPSAETFSDTNFHYDILAKRLRELSFLNSGVSIILNDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E ++    Y+GGI+AFV+YL+R K P+ QS       RD+ IS+ ++M+WNDG+ EN+ C
Sbjct: 119 ENKQDHFKYEGGIQAFVAYLNRKKTPVHQSVFHFSTERDDGISVKVSMQWNDGFQENIYC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALT  + +Y+EK   +K  K    GD+ REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRAALTLTLNTYMEKEGFNKNYKTIATGDNAREGLTAVVSVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+  VE  + + L+ +L E+P +AK +V K++DA+  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKGAVEQMMAEKLTEFLLENPGDAKTVVNKIVDAARAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKGV+D+A LPGKLADC ERDP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGVMDLAGLPGKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRT 418

Query: 516 LL 517
           LL
Sbjct: 419 LL 420


>gi|157683639|gb|ABV64551.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 419

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 260/422 (61%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+  + +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELPTEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|310781043|gb|ADP23997.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 400

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 206/403 (51%), Positives = 278/403 (68%), Gaps = 3/403 (0%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
            GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV
Sbjct: 1   RGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEV 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
            +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    
Sbjct: 61  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTD 120

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  + 
Sbjct: 121 LEVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE 179

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F N
Sbjct: 180 --EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFAN 237

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+
Sbjct: 238 NIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQ 297

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+L
Sbjct: 298 FEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKAREL 357

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           TRRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK 
Sbjct: 358 TRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKS 400


>gi|288561852|gb|ADC53562.1| DNA gyrase subunit beta [Acidovorax citrulli]
          Length = 437

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 232/441 (52%), Positives = 308/441 (69%), Gaps = 32/441 (7%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85
           P MYIGDT   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT  
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 86  ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
              D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++R+
Sbjct: 61  KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119

Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           G ++ + F             NG+  +P+ VTG   +  GTEV FLP ++IF   + F+Y
Sbjct: 120 GKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHY 178

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  RLRELSFLN+ V+I L D+R+ +         GG+  FV +++  KK L  +   
Sbjct: 179 EILAKRLRELSFLNNGVRIRLEDERTGKE--DDFSGAGGVMGFVQFINASKKVLHPNAFH 236

Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             GSR            I +++AM+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR 
Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRV 296

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y+E++  +KK K  V GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  
Sbjct: 297 IGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V   L+ +LEE P +AKI+  K+++A+  R+AAR+AR++TRRKGVLD   LPGKLADC E
Sbjct: 357 VAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 416

Query: 420 RDPKKSELFLVEGDSAGGSAK 440
           +DP  SE+++VEGDSAGGSAK
Sbjct: 417 KDPALSEIYIVEGDSAGGSAK 437


>gi|157683575|gb|ABV64519.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 419

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 262/422 (62%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I I++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGS KQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSTKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|310781277|gb|ADP24114.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781279|gb|ADP24115.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/401 (51%), Positives = 281/401 (70%), Gaps = 3/401 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L + PI ++   ++  +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNNDYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK 
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKS 398


>gi|310781193|gb|ADP24072.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781195|gb|ADP24073.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781197|gb|ADP24074.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 206/401 (51%), Positives = 278/401 (69%), Gaps = 3/401 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK 
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKS 398


>gi|149926944|ref|ZP_01915203.1| DNA topoisomerase IV subunit B [Limnobacter sp. MED105]
 gi|149824496|gb|EDM83714.1| DNA topoisomerase IV subunit B [Limnobacter sp. MED105]
          Length = 653

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 210/657 (31%), Positives = 310/657 (47%), Gaps = 29/657 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y   SI++LKGL+ VK+RP MY   T  +  L H+I EV+DNA DE+L G+   ITVT
Sbjct: 2   SQYQESSIRVLKGLEPVKQRPGMY---TRTDCPL-HIIQEVIDNAADEALGGFGSRITVT 57

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF---NQKSYKVSGGLHGVG 124
           ++ DGS +V D GRGIP  LH EE +   E++ TRLHAGGKF   +  +Y+ SGGLHGVG
Sbjct: 58  IHTDGSVSVQDEGRGIPIGLHPEEKVPVIELVFTRLHAGGKFNKADGGAYRFSGGLHGVG 117

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIF 182
           VSV NALS+ L++   R+  +  + F  G +  PL V    G     GT V   P    F
Sbjct: 118 VSVTNALSTRLEVSAVRDKQVGTLVFSGGDVIEPLKVRPQTGSDPKKGTTVRVWPDPQYF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLDRHKK 241
                  + +   LR  + L   V++ L+ +++ E +         G             
Sbjct: 178 DSAVLPLNEMDRLLRSKAVLLKGVEVVLVTEKTGEAKRWKFDDGLRGFLKEELLDRELVA 237

Query: 242 PLMQSPIRI-----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           P+    + +     +G  +      A+ +          + N IP   GGTH SGLR A+
Sbjct: 238 PMFSGDLSVDVLRDEGFAEGEGAAWALAFVAEGTPVRESYVNLIPTSAGGTHESGLREAV 297

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + I ++ E           ++ DD       VLS K+ DP+F  Q KE+L S +   +V
Sbjct: 298 FQAIKAFCEMH-SLMPKGIKLMPDDIFSKANFVLSAKVLDPQFQGQIKERLNSRDAVRLV 356

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
            S V      WL +H  + K I +  +  +  R    RA     ++    +A LPGKL D
Sbjct: 357 SSLVKPAFELWLNQHVEDGKKIAELAIKQAQAR---SRAAQKVEKRKSSSVAILPGKLTD 413

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C   D   +E+FLVEGDSAGGSAK GR +E QA+LPLRGK+LN      D++ ++QEI  
Sbjct: 414 CESTDITLNEVFLVEGDSAGGSAKMGRDKEFQAVLPLRGKVLNAWETDKDRLFANQEIHD 473

Query: 477 LITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT F++  P+LI +  L
Sbjct: 474 IAVAIGVDPHGVNDNPDLSGLRYGKICILSDADVDGSHIQVLLLTLFYKHFPALIRSQNL 533

Query: 535 YIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           Y+ +PPL+ +       +     Y  DE  L             E            ++ 
Sbjct: 534 YVARPPLFRVDVPAQGKKPARKLYCLDEAELYAVQDKLGKEGVKEANIKISRFKGLGEMN 593

Query: 589 NFIDDALKIDKLIKDFYPN--HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                   ++   +   P         E   +  +    ++     +      N + 
Sbjct: 594 AEQLWETTLNPDTRRLLPVTLGSMDVNETNAMMHMLMGRTESGARRTWLEDKGNLVE 650



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSR 779
           D +   G K   I + R+KGLGEMNA QLWETTLNPDTR LL V +   D ++ + +   
Sbjct: 569 DKLGKEGVKEANIKISRFKGLGEMNAEQLWETTLNPDTRRLLPVTLGSMDVNETNAMMHM 628

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR ++++      +DI
Sbjct: 629 LMGRTESGARRTWLEDKGNLVEVDI 653


>gi|326773489|ref|ZP_08232772.1| DNA gyrase, B subunit [Actinomyces viscosus C505]
 gi|326636719|gb|EGE37622.1| DNA gyrase, B subunit [Actinomyces viscosus C505]
          Length = 750

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 228/643 (35%), Positives = 320/643 (49%), Gaps = 96/643 (14%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +      Y A  + +L+GL+AV+KRP MYIG TD + GL H ++E++DNA+DE+LEG+ D
Sbjct: 6   NKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTD-QRGLMHCVWEIVDNAVDEALEGHGD 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I+VT++ DGS  V DNGRG+P D+    G++  E++ T+LHAGGKF   SY  +GGLHG
Sbjct: 65  DISVTVHDDGSIEVRDNGRGVPVDIEPSSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVT 162
           VG SVVNAL+  + + + R G  Y MSF  G                       + L V 
Sbjct: 125 VGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSAGRSPSSPFTGFTKASELRVI 184

Query: 163 GSAGN-DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---- 216
           G      TGT V +     IF    +++   L+ RLR+ SFL   + + L DKR      
Sbjct: 185 GKVRRGVTGTRVRYWADPQIFPKPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPEAEAI 244

Query: 217 -----------------------------------------EPREITMFYKGGIEAFVSY 235
                                                    +         GG   FV +
Sbjct: 245 AASTTPAADAGETDDAVHEVTLRAAAKNATENRGDLFDTGDDDGVEVFQALGGTADFVDF 304

Query: 236 LDRHKKPLMQSPIRIQGS--------------------RDNISIDLAMRWNDGYHENVLC 275
           L           +  +G+                         +D+A+RW  GY      
Sbjct: 305 LASDGSVTDTFRLTGEGTYTETVQQLDRASGHLRPVEVERTCMVDVALRWGIGYDTTERS 364

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVE---KSFGSKKDKRSVIGDDCREGFTSVLSI 332
           F N I    GGTHL+G   ALT+ +   +E   ++         V  DD   G T+V+++
Sbjct: 365 FVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKLTAKDGRVEKDDIMAGLTAVITV 424

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDASMV 388
           ++P+P+F  QTKE L +  VR +V   V   L+A L     + K     + +K++     
Sbjct: 425 RVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTALLTSSKRDLKTQARALEEKIVGEMRA 484

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R +AR  +++TRRK  L+ +SLP KLADC   D   SELF+VEGDSA G+AK  R  E Q
Sbjct: 485 RVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARDSEFQ 544

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           A+LP+RGKILNV++A    ML + E   +I  +G G G+  FD+   RY K+I+MTDADV
Sbjct: 545 ALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRT-FDLEAARYGKVILMTDADV 603

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           DGAHIRTLLLT FFR M  +I  G ++   PPL+ I    S +
Sbjct: 604 DGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGR 646



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLR 764
               + I       L+  +  + R G S    QRYKGLGEM+A QL ETT+ P  R+L R
Sbjct: 646 RRKKEIIYTYSDEELVSALRRLERAGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRR 705

Query: 765 VKITDAS---QADDLFSRLMGDEVEPRREFIQENSLPSA 800
           + + D +   +A+ +F  LMG  VEPRR+FI E +    
Sbjct: 706 ITLGDEAQIMEAESVFELLMGSSVEPRRDFIVEGARDVD 744


>gi|310781285|gb|ADP24118.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/400 (51%), Positives = 281/400 (70%), Gaps = 3/400 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L + PI ++   ++  +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNNDYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 397


>gi|94311457|ref|YP_584667.1| DNA topoisomerase IV subunit B [Cupriavidus metallidurans CH34]
 gi|93355309|gb|ABF09398.1| DNA topoisomerase IV, subunit B [Cupriavidus metallidurans CH34]
          Length = 690

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 211/676 (31%), Positives = 315/676 (46%), Gaps = 41/676 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L GY
Sbjct: 27  MASKT--SQYSESSIRVLKGLEPVKQRPGMY---TRTDNPL-HVVQEVIDNASDEALGGY 80

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVS 117
              I VTL+ DGS +V D+GRGIP  +H EE +   E++ TRLHA     K    +Y  S
Sbjct: 81  GTEILVTLHRDGSISVEDDGRGIPVGIHPEEQVPVVEIVFTRLHAGGKFDKGKGGAYAFS 140

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLV--VTGSAGNDTGTEVT 174
           GGLHGVGVSV NAL++ L + + R+G +  ++F + G +  PL           +GT V 
Sbjct: 141 GGLHGVGVSVTNALATRLDVTVWRDGAVSTLTFEHGGEVTRPLATRKIERGEKKSGTRVQ 200

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF---------- 224
             P +  F         LQ  LR  + L   V+++L+ +++ E                 
Sbjct: 201 VWPDAKYFDSAAIPMAELQRLLRSKAVLLPGVKVTLVLEKTGEQTVWQYEQGLKGYLVEA 260

Query: 225 --YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                G E  +   +             +G  +       + W +        + N IP 
Sbjct: 261 LAQGSGAELVIPMFEGEHFADPDKNAGEEGFAEGEGASWVVAWTEEGAPVRESYVNLIPT 320

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH SGLR  L   + S++E     +     ++ +D     + VLS K+ DP+F  Q
Sbjct: 321 PAGGTHESGLREGLFLAVKSFIEMH-SLQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQ 379

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            KE+L S +   +V +F    L  WL  H    K + + V+  +  R    RA     +K
Sbjct: 380 IKERLNSRDAVRLVSTFSRPALELWLNHHVDFGKKLAELVIRQAQAR---TRAAQKVEKK 436

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
               +A LPGKL DC   D +++E+FLVEGDSAGGSAK GR +E QAILPLRGK+LN   
Sbjct: 437 KGSGVAVLPGKLTDCESTDVERNEIFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 496

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTF 520
              D++ ++ E+  +  A+G        + +   LRY KI I++DADVDGAHI+ LLLT 
Sbjct: 497 TERDRLFANNEVHDIAVAIGVDPHGPDDEPDLSNLRYGKICILSDADVDGAHIQVLLLTL 556

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           FFR  P L+ NG + + +PPL+ +       +     Y  DE  LE              
Sbjct: 557 FFRHFPKLMANGNVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDG---- 612

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
             +    IS+      +      +  +           + +  +        +  +    
Sbjct: 613 VKEGAWQISRFKGLGEMSAGQLWETTMNPDTRRLLPVSLGEFDMPQTVTM-MNMLMGKGE 671

Query: 635 ASKLANRLNFIAEKSE 650
           AS+  + L     + E
Sbjct: 672 ASQRRSWLEEKGNEVE 687



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 724 DTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSR 779
           D +   G ++G   + R+KGLGEM+A QLWETT+NPDTR LL V +   D  Q   + + 
Sbjct: 606 DKLLKDGVKEGAWQISRFKGLGEMSAGQLWETTMNPDTRRLLPVSLGEFDMPQTVTMMNM 665

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++E       DI
Sbjct: 666 LMGKGEASQRRSWLEEKGNEVEADI 690


>gi|155573717|gb|ABU24295.1| DNA gyrase subunit B [Shigella dysenteriae]
          Length = 419

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 263/422 (62%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG     TGT V F PS + F+   +F YD L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGETE-KTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|310781201|gb|ADP24076.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781205|gb|ADP24078.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781207|gb|ADP24079.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781215|gb|ADP24083.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781217|gb|ADP24084.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781219|gb|ADP24085.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781221|gb|ADP24086.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781223|gb|ADP24087.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/399 (51%), Positives = 277/399 (69%), Gaps = 3/399 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|194339113|gb|ACF49472.1| GyrB [Amycolatopsis taiwanensis]
          Length = 448

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 200/450 (44%), Positives = 281/450 (62%), Gaps = 15/450 (3%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           H+I EV+DN++DE++ G+A  + VTL  DG   V D+GRGIP + H     S  E++ T 
Sbjct: 1   HLIQEVVDNSVDEAMAGFATKVEVTLLADGGVRVVDDGRGIPVEEHPVHKKSTLEIVHTV 60

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+ +SY VSGGLHGVGVSVVNALS+ L +   R+G I+   + +      L+  
Sbjct: 61  LHAGGKFDSESYAVSGGLHGVGVSVVNALSTALDVETIRDGTIWRQHYQHSEP-GELIEV 119

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
           G   + TGT  TF    DIF    +N +T+  RL+E++FLN  + I L D+R  E    T
Sbjct: 120 GPT-DRTGTSTTFWADPDIFETTTYNAETVARRLQEMAFLNKGLSIVLRDERVTEEDAET 178

Query: 223 -------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
                         +Y GG+E FV +++  K+P+  S I      D + +++AM+WN  Y
Sbjct: 179 DAVGQQARVKERVYYYPGGLEDFVKHINGSKEPIHPSVISFDAKGDGLEVEVAMQWNSSY 238

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
             +V  F N I   +GGTH  G R+ALTR +  Y       K+   ++ G+D REG  ++
Sbjct: 239 TPSVHTFANTINTHEGGTHEEGFRAALTRVVNVYARDKKLLKEKDENLSGEDVREGLAAI 298

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +SIK+ +P+F  QTK KL +SE +S V++  N+ L+ W E +P EAK I+ K + ++  R
Sbjct: 299 VSIKLAEPQFEGQTKTKLGNSEAKSFVQAKTNEWLADWFERNPGEAKTIINKAVSSAQAR 358

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AARRARDL RRKG LDI  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR    QA
Sbjct: 359 MAARRARDLVRRKGALDIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEGRESRFQA 418

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           ILP+RGKI+NVE+AR D++L + E+ +LIT
Sbjct: 419 ILPIRGKIINVEKARIDRVLKNTEVQSLIT 448


>gi|325068640|ref|ZP_08127313.1| DNA topoisomerase IV subunit B [Actinomyces oris K20]
          Length = 750

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 228/643 (35%), Positives = 320/643 (49%), Gaps = 96/643 (14%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +      Y A  + +L+GL+AV+KRP MYIG TD + GL H ++E++DNA+DE+LEG+ D
Sbjct: 6   NKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTD-QRGLMHCVWEIVDNAVDEALEGHGD 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I+VT++ DGS  V DNGRG+P D+    G++  E++ T+LHAGGKF   SY  +GGLHG
Sbjct: 65  DISVTVHDDGSIEVRDNGRGVPVDIEPSSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVT 162
           VG SVVNAL+  + + + R G  Y MSF  G                       + L V 
Sbjct: 125 VGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSAGRGPSSPFTGFTKSSELRVI 184

Query: 163 GSAGN-DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---- 216
           G      TGT V +     IF    +++   L+ RLR+ SFL   + + L DKR      
Sbjct: 185 GKVRRGVTGTRVRYWADPQIFPKPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPEAEAI 244

Query: 217 -----------------------------------------EPREITMFYKGGIEAFVSY 235
                                                    +         GG   FV +
Sbjct: 245 AASTTPAADAGETDDAVHEVTLRAAAKNATENRGDLFDTGDDDGVEVFQALGGTADFVDF 304

Query: 236 LDRHKKPLMQSPIRIQGS--------------------RDNISIDLAMRWNDGYHENVLC 275
           L           +  +G+                         +D+A+RW  GY      
Sbjct: 305 LASDGSVTDTFRLTGEGTYTETVQQLDRASGHLRPVEVERTCMVDVALRWGIGYDTTERS 364

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVE---KSFGSKKDKRSVIGDDCREGFTSVLSI 332
           F N I    GGTHL+G   ALT+ +   +E   ++         V  DD   G T+V+++
Sbjct: 365 FVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKLTAKDGRVEKDDIMAGLTAVITV 424

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDASMV 388
           ++P+P+F  QTKE L +  VR +V   V   L+A L     + K     + +K++     
Sbjct: 425 RVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTALLTSSKRDLKTQARALEEKIVGEMRA 484

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R +AR  +++TRRK  L+ +SLP KLADC   D   SELF+VEGDSA G+AK  R  E Q
Sbjct: 485 RVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARDSEFQ 544

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           A+LP+RGKILNV++A    ML + E   +I  +G G G+  FD+   RY K+I+MTDADV
Sbjct: 545 ALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRT-FDLEAARYGKVILMTDADV 603

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           DGAHIRTLLLT FFR M  +I  G ++   PPL+ I    S +
Sbjct: 604 DGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGR 646



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLR 764
               + I       L+ T+  + R G S    QRYKGLGEM+A QL ETT+ P  R+L R
Sbjct: 646 RRKKEIIYTYSDEELVTTLRRLERAGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRR 705

Query: 765 VKITDAS---QADDLFSRLMGDEVEPRREFIQENSLPSA 800
           + + D +   +A+ +F  LMG  VEPRR+FI E +    
Sbjct: 706 ITLGDEAQIMEAESVFELLMGSSVEPRRDFIVEGARDVD 744


>gi|157683607|gb|ABV64535.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
          Length = 419

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 261/422 (61%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH I IMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIFIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|320531398|ref|ZP_08032366.1| DNA gyrase, B subunit, carboxyl terminus [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136399|gb|EFW28379.1| DNA gyrase, B subunit, carboxyl terminus [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 750

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 233/710 (32%), Positives = 337/710 (47%), Gaps = 104/710 (14%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +      Y A  + +L+GL+AV+KRP MYIG TD + GL H ++E++DNA+DE+LEG+ D
Sbjct: 6   NKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTD-QRGLMHCVWEIVDNAVDEALEGHGD 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I+VT++ DGS  V DNGRG+P D+    G++  E++ T+LHAGGKF   SY  +GGLHG
Sbjct: 65  DISVTVHDDGSIEVRDNGRGVPVDIEPSSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVT 162
           VG SVVNAL+  + + + R G  Y MSF  G                       + L V 
Sbjct: 125 VGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSAGRSPSSLFTEFTKASELRVV 184

Query: 163 GSAGN-DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---- 216
           G      TGT V +     IF    +++   L+ RLR+ SFL   + + L DKR      
Sbjct: 185 GKVRRGVTGTRVRYWADPQIFPKPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPEAEAI 244

Query: 217 -----------------------------------------EPREITMFYKGGIEAFVSY 235
                                                    +         GG   FV +
Sbjct: 245 AASTTPAADAGETDDAVHEVTLRAAAKNTTENRGDLFDTGTDDGVEVFQALGGTADFVDF 304

Query: 236 LDRHKKPLMQSPIRIQGS--------------------RDNISIDLAMRWNDGYHENVLC 275
           L           +  +GS                         +D+A+RW  GY      
Sbjct: 305 LASDGSVTDTFRLTGEGSYTETVQQLDRASGHLRPVEVERTCMVDVALRWGIGYDTTERS 364

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVE---KSFGSKKDKRSVIGDDCREGFTSVLSI 332
           F N I    GGTHL+G   ALT+ +   +E   ++         V  DD   G T+V+++
Sbjct: 365 FVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKLTSKDGRVEKDDIMAGLTAVITV 424

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDASMV 388
           ++P+P+F  QTKE L +  VR +V   V   L+A L     + K     + +K++     
Sbjct: 425 RVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTALLSSSKRDLKTQARALEEKIVGEMRA 484

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R +AR  +++TRRK  L+ +SLP KLADC   D   SELF+VEGDSA G+AK  R  E Q
Sbjct: 485 RVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARDSEFQ 544

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           A+LP+RGKILNV++A    ML + E   +I  +G G G+  FD+   RY K+I+MTDADV
Sbjct: 545 ALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRT-FDLEAARYGKVILMTDADV 603

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR----GKSLQYVKDEESLEDYLI 564
           DGAHIRTLLLT FFR M  +I  G ++   PPL+ I       +  + +      E    
Sbjct: 604 DGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGRRKKEIIYTYSDEELVTT 663

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
            + L      F + +      +    +D     +  ++  +    +  +E
Sbjct: 664 LRRLERAGRSFKEPQRYKGLGE----MDAHQLAETTMEPQHRTLRRITLE 709



 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLR 764
               + I       L+ T+  + R G S    QRYKGLGEM+A QL ETT+ P  R+L R
Sbjct: 646 RRKKEIIYTYSDEELVTTLRRLERAGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRR 705

Query: 765 VKITDAS---QADDLFSRLMGDEVEPRREFIQENSLPSA 800
           + + D +   +A+ +F  LMG  VEPRR+FI E +    
Sbjct: 706 ITLEDEAQVMEAESVFELLMGSSVEPRRDFIVEGARDVD 744


>gi|148971375|gb|ABR20225.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 259/421 (61%), Positives = 320/421 (76%), Gaps = 2/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R+G +YE  +  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKVSGGLHGVGVSVVNALSEKLHLTIRRDGKVYEQDYKLGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL  TG      GTEVTF PSS IF+   ++YD L  RLRELSFLNS V I+L D+R+ 
Sbjct: 61  GPLKETGKTE-QRGTEVTFKPSSTIFTQTVYSYDILAKRLRELSFLNSGVLITLYDERTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             +E    Y+GG+  FV +L+++K+ + +      G  + I++++AM+WNDGY EN+ C+
Sbjct: 120 -GKEDEFHYQGGLREFVKHLNKNKEVINEDMFYYCGEENGITVEIAMQWNDGYQENMFCY 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R ALTR +  Y+E+   +KK K ++ GDD REG T+VLS+K+PD
Sbjct: 179 TNNIPQRDGGTHLAGFRGALTRSLNGYIEQEGIAKKSKVAISGDDAREGLTAVLSVKVPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VVES V + L A+L E P  AK I  K++DA+  R+AAR+AR
Sbjct: 239 PKFSSQTKDKLVSSEVKPVVESLVAEHLQAYLLEKPAAAKSIAGKIVDAARAREAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRK  LDIA LPGKLADC E+DP  SELFLVEGDSAGGSAKQ R R  QAILPL+GK
Sbjct: 299 EMTRRKSALDIAGLPGKLADCQEKDPAFSELFLVEGDSAGGSAKQARDRRTQAILPLKGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKML S E+GTLITALGTGIG+D ++  K+RYH IIIMTDADVDG+HIRTL
Sbjct: 359 ILNVEKARFDKMLESAEVGTLITALGTGIGRDEYEPQKVRYHSIIIMTDADVDGSHIRTL 418

Query: 517 L 517
           L
Sbjct: 419 L 419


>gi|161327339|gb|ABX60537.1| GyrB [Edwardsiella tarda]
          Length = 419

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 264/422 (62%), Positives = 333/422 (78%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G+++E  + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGHVHEQIYRHGVPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL V G     TGT V F PS + FS   +F YD L  RLRELSFLNS V I L DKR+
Sbjct: 61  APLKVVGDTE-QTGTRVRFWPSMETFSNVVEFQYDILAKRLRELSFLNSGVSIRLRDKRN 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
              RE    Y+GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ C
Sbjct: 120 D--REDHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTMKDDIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + SY+E    +KK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNSYMENEGYTKKSKISATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P +AKI+V K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVESLMNERLAEYLLENPSDAKIVVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|157683569|gb|ABV64516.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 419

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 261/422 (61%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH  IIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSFIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|88824757|gb|ABD52424.1| gyrase B [Escherichia coli]
 gi|155573705|gb|ABU24289.1| DNA gyrase subunit B [Shigella boydii]
 gi|155573707|gb|ABU24290.1| DNA gyrase subunit B [Shigella boydii]
 gi|155573709|gb|ABU24291.1| DNA gyrase subunit B [Shigella boydii]
 gi|155573711|gb|ABU24292.1| DNA gyrase subunit B [Shigella boydii]
 gi|155573713|gb|ABU24293.1| DNA gyrase subunit B [Shigella boydii]
 gi|155573715|gb|ABU24294.1| DNA gyrase subunit B [Shigella dysenteriae]
 gi|155573719|gb|ABU24296.1| DNA gyrase subunit B [Shigella dysenteriae]
 gi|155573721|gb|ABU24297.1| DNA gyrase subunit B [Shigella dysenteriae]
 gi|155573723|gb|ABU24298.1| DNA gyrase subunit B [Shigella dysenteriae]
 gi|155573725|gb|ABU24299.1| DNA gyrase subunit B [Shigella flexneri]
 gi|155573727|gb|ABU24300.1| DNA gyrase subunit B [Shigella flexneri]
 gi|155573729|gb|ABU24301.1| DNA gyrase subunit B [Shigella flexneri]
 gi|155573731|gb|ABU24302.1| DNA gyrase subunit B [Shigella flexneri]
 gi|155573733|gb|ABU24303.1| DNA gyrase subunit B [Shigella flexneri]
 gi|155573735|gb|ABU24304.1| DNA gyrase subunit B [Shigella sonnei]
 gi|155573737|gb|ABU24305.1| DNA gyrase subunit B [Shigella sonnei]
 gi|155573739|gb|ABU24306.1| DNA gyrase subunit B [Shigella sonnei]
 gi|155573741|gb|ABU24307.1| DNA gyrase subunit B [Shigella sonnei]
 gi|155573743|gb|ABU24308.1| DNA gyrase subunit B [Shigella sonnei]
 gi|157683565|gb|ABV64514.1| gyrase B [Escherichia coli]
          Length = 419

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 262/422 (62%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG     TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGETE-KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|149787391|gb|ABR29844.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 416

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 259/419 (61%), Positives = 327/419 (78%), Gaps = 4/419 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIR
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 416


>gi|4894891|gb|AAD32643.1|AF136383_1 gyrase B [Photobacterium angustum]
          Length = 419

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 330/421 (78%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I+R G+IY+  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIQRAGHIYQQVYRHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G     TGT + F PS D F+  +F+YD L  RLRELSFLNS V I+L D+R  
Sbjct: 61  APLAVIGDTE-KTGTRIRFWPSEDTFTNIEFHYDILAKRLRELSFLNSGVSINLSDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           + +E    Y+GGI AFV +L+R+K P+          RD+ IS+++ M+WNDG+ E++ C
Sbjct: 119 DGKEDHFMYEGGIRAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVPMQWNDGFQESIYC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKESYSKKAKAATSGDDAREGLTAVISVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCSKIIDASRAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LP KLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGALDLAGLPRKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPHKLRYHNIIIMTDADVDGSHIRT 418

Query: 516 L 516
           L
Sbjct: 419 L 419


>gi|319943518|ref|ZP_08017800.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lautropia mirabilis ATCC
           51599]
 gi|319743333|gb|EFV95738.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lautropia mirabilis ATCC
           51599]
          Length = 714

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/573 (35%), Positives = 299/573 (52%), Gaps = 30/573 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S +   + Y   SI++LKGL+ V++RP MY   T  E+ L H+I EV+DNA DE+L GYA
Sbjct: 48  SSSKNGADYSEASIRVLKGLEPVRQRPGMY---TRTENPL-HIIQEVIDNAADEALGGYA 103

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVSG 118
             I V L  DG   V+D+GRGIP  LH +EG+   E++ TRLHAGGKF++    +Y  SG
Sbjct: 104 RHIDVRLFKDGRVEVTDDGRGIPVGLHPDEGVPVIEIVFTRLHAGGKFDKTAGGAYSFSG 163

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNI--------YEMSFINGILDNPLVVTGSA--GND 168
           GLHGVGVSV NALS  L++ + R+G+         + ++F +G L   LV   +      
Sbjct: 164 GLHGVGVSVTNALSRRLEVTVWRKGDKDAAGNRLAHTIAFADGELAESLVARPATRDEPS 223

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK-G 227
           +GT VT  P    F         L+  LR  + L   V+++L  +++ E R+        
Sbjct: 224 SGTRVTVTPDPKYFDSATIPVAELERLLRSKAVLLPGVRVTLTLEKTGETRQWQYDEGLR 283

Query: 228 GIEAFVSYLDRHKKP--LMQSPIRI-QGSRDNIS---IDLAMRWNDGYHENVLCFTNNIP 281
           G        +   +P  L +      +G             + + +        + N IP
Sbjct: 284 GYLQEELAQEPGVEPLVLFEDQQYAGRGDDSFAEGEGAHWVVAFTENGPLARESYVNLIP 343

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH SGLR  L   I  ++E     +     ++ +D     + VLS ++ DP+F  
Sbjct: 344 TPAGGTHESGLREGLFTAIRGFIELHN-LQPKGVRLMAEDAFARASFVLSARVLDPQFQG 402

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE+L S +   +V   V      WL +H  +A+ + + V+  +  R  + +      +
Sbjct: 403 QTKERLSSRDAVRLVSGAVRTQFEFWLNQHVDQARKLAELVIRQAQARQRSAQK---VEK 459

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           +    +A LPGKL DC   D   +ELFLVEGDSAGGSAK GR +ENQA+LPLRGK+LN  
Sbjct: 460 RKGSGVAVLPGKLTDCESTDTAHNELFLVEGDSAGGSAKMGRDKENQAVLPLRGKLLNTW 519

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLT 519
               D++ ++ EI  +  A+G          +   LRY KI I++DADVDG+HI+ LLLT
Sbjct: 520 ETEPDRLFANNEIHDIAVAIGVDPHPRGASPDLSGLRYGKICILSDADVDGSHIQVLLLT 579

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
            FFR  P+LI  G +Y+ +PPLY +      + 
Sbjct: 580 LFFRHFPALIDAGHIYVARPPLYRVDVPARGKQ 612



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 11/88 (12%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK-----ITDASQADDL 776
           + +   G +    ++ R+KGLGEM A QLWETTLNP TRSL +V+     + D       
Sbjct: 630 EKLRKDGMREGSWTVSRFKGLGEMTAEQLWETTLNPATRSLSQVRYGAVPVPDTEA---Q 686

Query: 777 FSRLMGD-EVEPRREFIQENSLPSALDI 803
           F+ LMG  E   RR +++E+   +  D+
Sbjct: 687 FTLLMGKGEAAGRRSWLEEHGDQARADV 714


>gi|310781183|gb|ADP24067.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/399 (51%), Positives = 277/399 (69%), Gaps = 3/399 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYEKGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSXAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|19909723|dbj|BAB87057.1| DNA gyrase subunit B [Aquaspirillum serpens]
 gi|19909725|dbj|BAB87058.1| DNA gyrase subunit B [Aquaspirillum serpens]
          Length = 390

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 215/393 (54%), Positives = 287/393 (73%), Gaps = 3/393 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
              GLHHM++EVLDNAIDE+L G+ D I +T++ D S ++ DNGRGIPTD+H E+G SAA
Sbjct: 1   DGPGLHHMVFEVLDNAIDEALAGHCDTIRITIHPDQSISIEDNGRGIPTDIHPEKGRSAA 60

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS WL+L+I R+G+++EM F  G   
Sbjct: 61  EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSDWLRLKIWRDGHVHEMEFRRGEPV 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL  TG +    GTEVTF+ S   F + +++Y+ L  R+RELSFLN+ V I L DKRS 
Sbjct: 121 APLRATGQS-QHRGTEVTFMASQKTFGLIEYHYEILAKRIRELSFLNNGVSIILSDKRSG 179

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG+  FV Y++R+K PL       QG ++ +++++AM+WND Y E+V CF
Sbjct: 180 KE--ENFAFAGGVAGFVEYMNRNKSPLHSKIYYAQGEKEGMTVEVAMQWNDSYQESVQCF 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+ LTR +  Y+E+   +KK K    GDD REG T VLS+K+PD
Sbjct: 238 TNNIPQRDGGTHLTALRAVLTRTLNQYIEEHEFAKKAKVETAGDDMREGLTCVLSVKLPD 297

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSE+  +V+  +   L  +L+E+P EAKII  K+++A+  R+AAR+AR
Sbjct: 298 PKFSSQTKDKLVSSEISPIVQEIIGQTLHDFLQENPNEAKIICSKIVEAARAREAARKAR 357

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           ++TRRKGV+D   LPGKLADC E+DP  SEL+L
Sbjct: 358 EITRRKGVMDGLGLPGKLADCQEKDPALSELYL 390


>gi|2267080|gb|AAB63505.1| gyrase B subunit [Pseudoalteromonas peptidolytica]
          Length = 420

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 260/422 (61%), Positives = 333/422 (78%), Gaps = 3/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G +++  +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKLHQQKYTMGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL + G A   TGTE+ F PS++ FS  +F+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLGIIGEAE-TTGTELRFWPSAETFSDTNFHYDILAKRLRELSFLNSGVSIILSDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E ++    Y+GGI+AFV YL+R K P+ QS       R++ IS++++M+WNDG+ EN+ C
Sbjct: 119 ENKQDHFKYEGGIQAFVEYLNRKKTPVHQSVFHFSTEREDGISVEVSMQWNDGFQENIYC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGFNKKHKTNATGDDAREGLTAVVSVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+  VE  + + L+ +L E+P +AK +V K++DA+  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKGAVEQMMAEKLTEFLLENPGDAKTVVNKIVDAARAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKGV+D+A LPGKLADC ERDP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGVMDLAGLPGKLADCQERDPALSELYVVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+A FDKMLSSQE+ TLITALG GIG D ++  KLRYH+IIIM DADVDG+HIRT
Sbjct: 359 KILNVEKASFDKMLSSQEVATLITALGCGIGSDEYNPEKLRYHRIIIMNDADVDGSHIRT 418

Query: 516 LL 517
           LL
Sbjct: 419 LL 420


>gi|310781179|gb|ADP24065.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781181|gb|ADP24066.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781185|gb|ADP24068.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781187|gb|ADP24069.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/399 (51%), Positives = 277/399 (69%), Gaps = 3/399 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYEKGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|310781011|gb|ADP23981.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781013|gb|ADP23982.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781015|gb|ADP23983.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781017|gb|ADP23984.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781023|gb|ADP23987.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/400 (51%), Positives = 277/400 (69%), Gaps = 3/400 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L
Sbjct: 61  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 121 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NN
Sbjct: 179 -EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 238 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 298 EGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 397


>gi|73542044|ref|YP_296564.1| DNA topoisomerase IV subunit B [Ralstonia eutropha JMP134]
 gi|72119457|gb|AAZ61720.1| DNA topoisomerase IV subunit B [Ralstonia eutropha JMP134]
          Length = 663

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 212/619 (34%), Positives = 301/619 (48%), Gaps = 40/619 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L G+
Sbjct: 1   MASKT--SQYSESSIRVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNASDEALGGF 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVS 117
              I VTL+ DGS +V D+GRGIP  +H EEG+   E++ TRLHA     K    +Y  S
Sbjct: 55  GSEILVTLHRDGSVSVEDDGRGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGKGGAYAFS 114

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + R+G +  ++F  G +  PL            GT V  
Sbjct: 115 GGLHGVGVSVTNALSTQLDVSVWRDGMMSTLTFSGGDVTAPLTSRKLERGEKKNGTRVQV 174

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF----------- 224
            P +  F         LQ  LR  + L   V+++L+ ++S E +                
Sbjct: 175 WPDAKYFDSAAIPQAELQRLLRSKAVLLPGVKVTLVIEKSGETQTWQYDQGLKGYLVEAL 234

Query: 225 -YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
               G E  +   +        +    +G  D       + W +        + N IP  
Sbjct: 235 AQGSGAELVIPMFEGEHFADPDANPGEEGFADGEGASWVVAWTEEGAPVRESYVNLIPTP 294

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S++E     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 295 AGGTHESGLREGLFQAVKSFIEMHA-LQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQI 353

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V +F    L  WL  H    K + + V+  +  R    RA     +K 
Sbjct: 354 KERLNSRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQAR---TRAAQKVEKKK 410

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 411 GSGVAVLPGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWET 470

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G      + + +   LRY KI I++DADVDGAHI+ LLLT F
Sbjct: 471 ERDRLFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLF 530

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----E 570
           FR  P LI  G + + +PPL+ +       +     Y  DE  LE               
Sbjct: 531 FRHFPKLIEAGNVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLIKDGVKEGS 590

Query: 571 EIELFCDSKGVISKNDLRN 589
                    G +S   L  
Sbjct: 591 WQISRFKGLGEMSAEQLWE 609



 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSR 779
           D +   G K     + R+KGLGEM+A QLWETT+NPDTR LL V +   D  Q  ++ + 
Sbjct: 579 DKLIKDGVKEGSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGEYDLPQTVEMMNM 638

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++E       DI
Sbjct: 639 LMGKGEAAQRRSWLEEKGNEVEADI 663


>gi|68138767|gb|AAY86012.1| GyrB [Burkholderia cenocepacia]
          Length = 594

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 256/583 (43%), Positives = 367/583 (62%), Gaps = 8/583 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G+  +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 16  DGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLT 74

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+E
Sbjct: 75  DLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNE 132

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS
Sbjct: 133 NVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLS 192

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +L E P++AKII  K+++A+  RDA
Sbjct: 193 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDA 252

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKGVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAIL
Sbjct: 253 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAIL 312

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNVE+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGA
Sbjct: 313 PLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGA 372

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTF +RQMP +I  G++YI +PPLY I  GK  +Y+KD+  L  +++  +L   
Sbjct: 373 HIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGS 432

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
             +  ++   IS + L       L    +I      +D   +E AV+ GV    S++E  
Sbjct: 433 ELVPGENAAAISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEEST 491

Query: 632 VSLASKLANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            + A  L   L+  A K+E      +        + V+R   G     V++     +   
Sbjct: 492 EASAKALHAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADY 551

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
           +     +N  +        +      + +    S +  + +  
Sbjct: 552 QQLVTTANTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADA 594


>gi|218673349|ref|ZP_03523018.1| DNA gyrase subunit B [Rhizobium etli GR56]
          Length = 362

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 193/291 (66%), Positives = 243/291 (83%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           ++N  ++ Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+A
Sbjct: 29  TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 88

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           DI+TV+LN DGS TV+DNGRGIPTD+H  EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH
Sbjct: 89  DIVTVSLNPDGSVTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 148

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PL VTG A ++TGTEV+F+PSS+ 
Sbjct: 149 GVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGEAPDETGTEVSFMPSSET 208

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV+YLDR KK
Sbjct: 209 FTMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELRYDGGLEAFVAYLDRAKK 268

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           PL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGG     L
Sbjct: 269 PLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGHPYGRL 319


>gi|295979463|dbj|BAJ07404.1| DNA gyrase subunit B [Acinetobacter calcoaceticus subsp. anitratus]
          Length = 380

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 219/383 (57%), Positives = 278/383 (72%), Gaps = 3/383 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  +GLHHM++EV+DNAIDE+L G+ D I VT++ D S +VSDNGRGIPTD+H EEG+
Sbjct: 1   DTDDGTGLHHMVFEVVDNAIDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVI+T LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L L I R G I+E  + +G
Sbjct: 61  SAAEVILTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G   ++TGT V F PS++ FS   FN + L  RLRELSFLN+ V+I L D+
Sbjct: 121 DPQYPLRVIGET-DNTGTTVRFWPSAETFSQTIFNVEILARRLRELSFLNAGVRIVLRDE 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R     E    Y+GG+  FV Y++  K  L +       + + I++++A++WND Y ENV
Sbjct: 180 RI--NLEHVYDYEGGLSEFVKYINEGKNHLNEIFHFTADADNGIAVEVALQWNDSYQENV 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQKDGGTHL+G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K
Sbjct: 238 RCFTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVK 297

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTKEKLVSSEV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR
Sbjct: 298 VPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAAR 357

Query: 394 RARDLTRRKGVLDIASLPGKLAD 416
           +AR++TRRK  LDIA LPGKLAD
Sbjct: 358 KAREMTRRKSALDIAGLPGKLAD 380


>gi|148971441|gb|ABR20258.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 261/422 (61%), Positives = 328/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG     TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGETE-KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D   +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGXGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|310780997|gb|ADP23974.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 203/400 (50%), Positives = 275/400 (68%), Gaps = 3/400 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A 
Sbjct: 1   GSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAV 60

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EV +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+  
Sbjct: 61  EVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPK 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  
Sbjct: 121 TDLEVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDG 179

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F
Sbjct: 180 KE--EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSF 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +
Sbjct: 238 ANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKN 297

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR
Sbjct: 298 PQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKAR 357

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           +LTRRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAG
Sbjct: 358 ELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAG 397


>gi|58761283|gb|AAW82356.1| DNA gyrase subunit B [Dehalococcoides sp. CBDB1]
          Length = 428

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/431 (49%), Positives = 294/431 (68%), Gaps = 3/431 (0%)

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           ++DE++ G  D I V +  DGS +V DNGRGIP D+H    ISA E +MT LHAG KF  
Sbjct: 1   SVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHSTTKISALETVMTVLHAGAKFGG 60

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           K+Y+VSGGLHGVG SVVNALS W  ++++R G IY+ S++ G    PL   G     +GT
Sbjct: 61  KTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGT 119

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
              F+  S IFS  +++++TL  RLRE+++LN  +++ + D++S + R      +GGI  
Sbjct: 120 TTIFMADSQIFSTTEYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERTYYF--EGGITG 177

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+R+++   + PI I    D+  +++A+++NDGY ++ L F N +   DGGTHL+G
Sbjct: 178 FVRHLNRNREVRHRQPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTVDGGTHLTG 237

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR    Y  KS   K    +++GDD REG  +++S+K+P+P+F  QTK KL + E
Sbjct: 238 FRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIE 297

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           ++S VES V + LS +LEEHP + K I++K + A+  R+AAR+ARDL  RK  LD  +LP
Sbjct: 298 IKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLP 357

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCSERD    ELFLVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A  DKML+ 
Sbjct: 358 GKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAH 417

Query: 472 QEIGTLITALG 482
           +EI  +ITAL 
Sbjct: 418 EEIRAIITALA 428


>gi|2267058|gb|AAB63494.1| gyrase B subunit [Pseudoalteromonas atlantica]
          Length = 423

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 264/425 (62%), Positives = 333/425 (78%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+REG ++E ++  G+ +
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPN 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G A + TGTE+ F PS + F+  DF+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLTVIGDA-DTTGTELRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVL 274
           E +     Y GGI+AFV YL+R+K P+ +        R+   IS++++M+WNDG+ EN+ 
Sbjct: 119 ENKTDHFKYDGGIQAFVEYLNRNKTPVHKGVFHFTHEREEEGISVEVSMQWNDGFQENIY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSI 332
           CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VE  + +  S +L E+P++AKI+V K++DA+  R+AA
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAARAREAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG +D+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D  KLRYH IIIMTDADVDG+H
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHSIIIMTDADVDGSH 418

Query: 513 IRTLL 517
           IRTLL
Sbjct: 419 IRTLL 423


>gi|157683621|gb|ABV64542.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
          Length = 419

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 257/422 (60%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+   +RLRELSFLNS V I    +  
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEIPANRLRELSFLNSGVSI--RQRDK 117

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            + +E    Y+GGI+AFV YL+++K P+  +       +D I +++A++W+DG+ EN+ C
Sbjct: 118 RDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWHDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|310781265|gb|ADP24108.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781269|gb|ADP24110.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781271|gb|ADP24111.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 204/400 (51%), Positives = 280/400 (70%), Gaps = 3/400 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L + PI ++   ++  +++ M++ND Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNNDYEVEVCMQYNDSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK 
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKS 397


>gi|310781005|gb|ADP23978.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 204/399 (51%), Positives = 276/399 (69%), Gaps = 3/399 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV 
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVA 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L
Sbjct: 61  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +  
Sbjct: 121 EVIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NN
Sbjct: 179 -EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F
Sbjct: 238 IDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQF 297

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LT
Sbjct: 298 EGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELT 357

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           RRK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGS
Sbjct: 358 RRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGS 396


>gi|2353022|gb|AAB92596.1| gyrase beta subunit [Shewanella putrefaciens 200]
          Length = 419

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 250/422 (59%), Positives = 322/422 (76%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I LID+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        RD+ I++++ M+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKEVFHFMQERDDGITVEVVMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+   +AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAGEAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TR KG LD+  LPGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRCKGALDLGGLPGKLADCQEKDPGFSEIYIVEGDFAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML  QE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLFFQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|149787394|gb|ABR29845.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 415

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 258/418 (61%), Positives = 326/418 (77%), Gaps = 4/418 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HI
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHI 415


>gi|161897998|gb|ABX80108.1| DNA gyrase subunit B [Streptomyces azureus]
          Length = 482

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 230/485 (47%), Positives = 316/485 (65%), Gaps = 22/485 (4%)

Query: 29  SMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH 88
            MYIG T GE GLHH++ EV+DN++DE+L GYAD I VT+  DG   V DNGRGIP D+H
Sbjct: 1   GMYIGST-GERGLHHLVQEVVDNSVDEALAGYADTIDVTILADGGVRVVDNGRGIPVDMH 59

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
             E   A EV++T LHAGGKF    Y VSGGLHGVGVSVVNALS+ + + IKR+G  +  
Sbjct: 60  PVEKKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTKVSVDIKRDGYRWTQ 119

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
            +  G+   PL V   A  D+GT VTF    DIF   D++++TL  R +E++FLN  ++I
Sbjct: 120 DYKMGVPTAPL-VKHEAVEDSGTTVTFWADPDIFETTDYSFETLSRRFQEMAFLNKGLRI 178

Query: 209 SLIDKRS----------------PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQ 251
           +L D+R                  E + ++  Y+GGI  FV Y   R  + +  + I ++
Sbjct: 179 NLTDERESAKATAGADEAGEDEKHEVKHVSYHYEGGIVDFVKYLNSRKGEAVHPTVIDLE 238

Query: 252 GS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                  +S+++AM+WN GY E V  F N I   +GGTH  G R+ALT  I  Y      
Sbjct: 239 AEDKDRQLSLEVAMQWNSGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKRL 298

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            ++   ++ GDD REG T+++S+K+ +P+F  QTK KL ++EV++ V+  V + L+ WL+
Sbjct: 299 LREKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKLGNTEVKTFVQRVVYEHLNDWLD 358

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EA  I++K + A+  R AAR+ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F+
Sbjct: 359 RNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFI 418

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D++L +QEI  +I+A GTG+ +D 
Sbjct: 419 VEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHED- 477

Query: 490 FDINK 494
           FDI K
Sbjct: 478 FDIEK 482


>gi|310781267|gb|ADP24109.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781273|gb|ADP24112.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781275|gb|ADP24113.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 203/398 (51%), Positives = 279/398 (70%), Gaps = 3/398 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L + PI ++   ++  +++ M++ND Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNNDYEVEVCMQYNDSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 395


>gi|310781189|gb|ADP24070.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/399 (51%), Positives = 277/399 (69%), Gaps = 3/399 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 396


>gi|329946872|ref|ZP_08294284.1| DNA gyrase, B subunit protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526683|gb|EGF53696.1| DNA gyrase, B subunit protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 750

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 226/643 (35%), Positives = 321/643 (49%), Gaps = 96/643 (14%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +      Y A  + +L+GL+AV+KRP MYIG TD + GL H ++E++DNA+DE+LEG+ D
Sbjct: 6   NKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTD-QRGLMHCVWEIVDNAVDEALEGHGD 64

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I+VT++ DGS  V DNGRG+P D+    G++  E++ T+LHAGGKF   SY  +GGLHG
Sbjct: 65  DISVTVHDDGSIEVRDNGRGVPVDIEPSSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHG 124

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------DNPLVVT 162
           VG SVVNAL+  + + + R G  Y MSF  G                       + L V 
Sbjct: 125 VGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSSGRGPSSPFTEFTKASELRVI 184

Query: 163 GSAGN-DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---- 216
           G      +GT V +     IF    +++   L+ RLR+ SFL   + + L DKR      
Sbjct: 185 GKVRRGVSGTRVRYWADPQIFPRPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPEAEAI 244

Query: 217 -----------------------------------------EPREITMFYKGGIEAFVSY 235
                                                    +         GG   FV +
Sbjct: 245 AASNTPAADAGETDDAVHEVTLRAAAKNATENRGDLFDTGDDDGVEVFQALGGTADFVDF 304

Query: 236 LDRHKKPLMQSPIRIQGS--------------------RDNISIDLAMRWNDGYHENVLC 275
           L           +  +G+                        ++D+A+RW  GY      
Sbjct: 305 LASDGSVTDTFRLTGEGTYTETVQQLDRASGHLRPVEVERTCTVDVALRWGIGYETTERS 364

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVE---KSFGSKKDKRSVIGDDCREGFTSVLSI 332
           F N I    GGTHL+G   ALT+ +   +E   ++         V  DD   G T+V+++
Sbjct: 365 FVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKITSKDGRVEKDDIMAGLTAVITV 424

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDASMV 388
           ++P+P+F  QTKE L +  VR +V   V   L+  L     + K     + +K++     
Sbjct: 425 RVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTTLLTSSKRDLKTQARALEEKIVGEMRA 484

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R +AR  +++TRRK  L+ +SLP KLADC   D   SELF+VEGDSA G+AK  R+ E Q
Sbjct: 485 RVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARNSEFQ 544

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           A+LP+RGKILNV++A    ML + E   +I  +G G G+  FD+   RY K+I+MTDADV
Sbjct: 545 ALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRT-FDLESARYGKVILMTDADV 603

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           DGAHIRTLLLT FFR M  +I  G ++   PPL+ I    S +
Sbjct: 604 DGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGR 646



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISM---QRYKGLGEMNASQLWETTLNPDTRSLLR 764
               + I       L+ T+  + R G S    QRYKGLGEM+A QL ETT+ P  R+L R
Sbjct: 646 RRKKEIIYTYSDEELITTLRRLERSGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRR 705

Query: 765 VKITDAS---QADDLFSRLMGDEVEPRREFIQENSLPSA 800
           + + D +   +A+ +F  LMG  VEPRR+FI E +    
Sbjct: 706 ITLGDEAQVMEAESIFELLMGSSVEPRRDFIVEGARDVD 744


>gi|84997852|ref|XP_953647.1| DNA topoisomerase II [Theileria annulata]
 gi|65304644|emb|CAI72969.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 922

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 227/688 (32%), Positives = 345/688 (50%), Gaps = 111/688 (16%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y +D I +L+GL+AV+KRP MYIG+T GE G+H ++YEVLDN++DE L G+ + ITV
Sbjct: 103 TGEYSSDDIIVLEGLNAVRKRPGMYIGNT-GERGVHQLLYEVLDNSVDEYLAGFCNRITV 161

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--------------NQK 112
           +L  DGS  VSDNGRGIP D+  + G S  E ++T LH+GGKF              +Q 
Sbjct: 162 SLMKDGSVEVSDNGRGIPCDISPKTGKSGLETVLTVLHSGGKFQDIFPPNSTSMSSEDQN 221

Query: 113 SYK----------------VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
             K                 S GLHGVG+SVVNALS  L + + +    Y +    G + 
Sbjct: 222 DLKSRKKGEKEHEEKKVYEYSSGLHGVGLSVVNALSELLIVDVYKGPKSYHIELSKGNIV 281

Query: 157 NPLVVTGSAG---------NDTGTEVTFLPSSD-IFSVQDFNYDT--------------- 191
            PL                   GT + FLP    IF     + +T               
Sbjct: 282 KPLAEFSEPETTEKSNNNLKRYGTTIRFLPDYKNIFKTHHQHTETEKEEDYDTTTNKSGL 341

Query: 192 ---------------LQHRLRELSFLNSSVQISL----IDKRSPEPREITMFYKGGIEAF 232
                          ++ R +ELS+LN  + I L    I   + EP E T    GG  +F
Sbjct: 342 DTKCSGCKNGFILELIKTRAKELSYLNPGLSIKLVDYRITDENNEPWEETYRNTGGTRSF 401

Query: 233 VSYLDRHKKPLMQSPIR--IQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHL 289
           +  L + K PL +      I+G   NI+++++  W+ + Y   +  + NN+     GTH+
Sbjct: 402 LEELIKDKTPLYKPISYITIKGVISNINVEVSFSWSLESYTALIKGYANNV-STIAGTHI 460

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G + ++TR +   ++K    K + + + G+  REG T+V+S+K+    F  QTK KL +
Sbjct: 461 DGFKISITRCVNGLLKKYGYFKGNVKPLNGEFIREGMTAVISVKLTGAEFDGQTKTKLGN 520

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           + V++V E  VN+  +  LE +      I  K   A    DAAR A+DL R+K    +++
Sbjct: 521 ALVKTVTEKIVNEQFTNILENNKELLLAIHNKSQAAKKAFDAARTAKDLIRQKSSSIVSN 580

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF-DKM 468
           + GKL +CS    + +ELF+VEG+SA G+AKQ R+R+ QA+LPL+GKILN+E+     K+
Sbjct: 581 ISGKLTECSSSKVENNELFIVEGESAAGNAKQARNRQFQAVLPLKGKILNIEKITDNSKV 640

Query: 469 LSSQEIGTLITALGTGIGQDSFDIN-------------------------------KLRY 497
           L +Q+I  L+ ++G  I   ++  N                               KLRY
Sbjct: 641 LENQQIQLLMNSIGISINPVTWRQNDLTEGTHMAMDRFIEMNSSKLTRKQIWLDLSKLRY 700

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KII++TDADVDG+H+++LLL   +R  PSL  +G +Y+  PPLY IT  ++ +Y+    
Sbjct: 701 GKIILLTDADVDGSHLKSLLLCLLYRLCPSLYLHGRVYVASPPLYRITNLRNKKYIYSWS 760

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKN 585
                   + L+ +      ++ V  K+
Sbjct: 761 QEHLLKTIKELNSKYSPKETTERVREKD 788



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 8/110 (7%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLN 756
           E    + S I   +K   +    L +   S  +  K + +QR+KGLGEM A+QLWETT++
Sbjct: 816 ELKTELGSNITKDEK---SDELDLYNINKSFSKNNKHLIIQRFKGLGEMMANQLWETTMD 872

Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN--SLP-SALDI 803
           P  R L R+ ++   +  ++   LMG +V+ R+++I  N  +     LDI
Sbjct: 873 PKKRILKRIVVSQEPEISEIIRLLMGSDVQSRKQYIFNNSGAFNLEDLDI 922


>gi|148971353|gb|ABR20214.1| DNA gyrase subunit B [uncultured bacterium]
 gi|148971373|gb|ABR20224.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 255/421 (60%), Positives = 318/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS+WLK+ I R+G  + M F  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKMTIYRDGKRHFMEFREGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ FLPS + F V +F+YD L  RLRELSFLN+ V I L D R  
Sbjct: 61  APLAVVGDS-QKNGTEIHFLPSPETFGVIEFHYDILARRLRELSFLNNGVSILLKDLRHG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
              E    + GG+  FV YL+R +  L  +     G ++ I++++AM+WN+ Y ENVLCF
Sbjct: 120 --HEENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGIAVEVAMQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+A+TR +  ++E++  ++K K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTALRAAMTRTLNQFIEENELARKAKVETTGDDMREGLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR  VE  V++ +  +L E P+EA+IIV K++DA+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPAVEEVVSEQMRNFLLEKPVEARIIVGKIIDAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD   LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 ELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++SSQEI TLITALGTGIG+D +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|310781191|gb|ADP24071.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781209|gb|ADP24080.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781213|gb|ADP24082.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 204/398 (51%), Positives = 276/398 (69%), Gaps = 3/398 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 395


>gi|148971343|gb|ABR20209.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 246/421 (58%), Positives = 318/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS  L L I+  G IYE  + +G   
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSEELHLVIRMNGKIYEQYYHHGEPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +  + GTEV F PS++ F    F+YD L  RLREL+FLNSS++I L D+R+ 
Sbjct: 61  APLATIGESS-EHGTEVRFKPSAETFKNIQFHYDVLAKRLRELAFLNSSIRIYLTDERTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y GG++ FV  L+R+K P+          +D +++++AM+WND Y E + C+
Sbjct: 120 KN--EIFEYHGGLKGFVEDLNRNKTPIHSKIFYFNAEKDKVTVEVAMQWNDTYQEKLFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTH++G RS LTR + +Y+EK   +K++K +  GDD REG T+VLS+KMP+
Sbjct: 178 TNNIPQRDGGTHVAGFRSGLTRVLNNYIEKEGYAKREKVATSGDDLREGLTAVLSVKMPN 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FS+QTK+KLVSSE++S+VES +N+    +L E+P +AK IV KV++A+  R+AAR+AR
Sbjct: 238 PKFSAQTKDKLVSSEIKSIVESLMNEKFQEFLMENPQDAKSIVSKVIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRK  LD+A LPGKLADC E DP KSELF+VEGDSAGGSAKQ R R+ QA+LPL+GK
Sbjct: 298 ELTRRKSALDVAGLPGKLADCQEEDPTKSELFIVEGDSAGGSAKQARDRKTQAVLPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+ TLITALG GIG++ +  +KLRYH IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVATLITALGCGIGREEYSPDKLRYHSIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|310781133|gb|ADP24042.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 204/399 (51%), Positives = 276/399 (69%), Gaps = 3/399 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKXGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|194290253|ref|YP_002006160.1| DNA topoisomerase iv subunit b [Cupriavidus taiwanensis LMG 19424]
 gi|193224088|emb|CAQ70097.1| DNA topoisomerase IV, subunit B [Cupriavidus taiwanensis LMG 19424]
          Length = 663

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 212/619 (34%), Positives = 301/619 (48%), Gaps = 40/619 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L G+
Sbjct: 1   MASKT--SQYSESSIRVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNASDEALGGH 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVS 117
              I VTL+ DGS +V D+GRGIP  +H EEG+   E++ TRLHA     K    +Y  S
Sbjct: 55  GSEILVTLHRDGSLSVEDDGRGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGKGGAYAFS 114

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + R+G    ++F  G +  PL            GT V  
Sbjct: 115 GGLHGVGVSVTNALSTQLDVTVWRDGMCSTLTFSGGDVTVPLASRKLERGEKKNGTRVQV 174

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF----------- 224
            P +  F         LQ  LR  + L   V+++L+ +++ E +                
Sbjct: 175 WPDARYFDSAAIPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEAL 234

Query: 225 -YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
               G E  +   +        +    +G  D       + W +        + N IP  
Sbjct: 235 AQGSGAELVIPMFEGEHFADPDANPGEEGFADGEGASWVVAWTEDGAPVRESYVNLIPTP 294

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S++E     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 295 AGGTHESGLREGLFQAVKSFIEMHA-LQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQI 353

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V +F    L  WL  H    K + + V+  +  R    RA     +K 
Sbjct: 354 KERLNSRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQAR---TRAAQKVEKKK 410

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 411 GSGVAVLPGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWET 470

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G      + + +   LRY KI I++DADVDGAHI+ LLLT F
Sbjct: 471 ERDRLFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLF 530

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----E 570
           FR  P LI  G +Y+ +PPL+ +       +     Y  DE  LE               
Sbjct: 531 FRHFPKLIETGNVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDGVKENS 590

Query: 571 EIELFCDSKGVISKNDLRN 589
                    G +S   L  
Sbjct: 591 WQISRFKGLGEMSAEQLWE 609



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSR 779
           D +   G K     + R+KGLGEM+A QLWETT+NPDTR LL V +   D  Q  ++ + 
Sbjct: 579 DKLLKDGVKENSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVTLGEYDLPQTVEMMNM 638

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++E       DI
Sbjct: 639 LMGKGEAAQRRSWLEEKGNEVEADI 663


>gi|148971381|gb|ABR20228.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 249/421 (59%), Positives = 319/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS  L L I+  G ++E ++ NG   
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSEDLHLVIRINGKVHEQTYHNGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G    + GTEV F PS++IF    FNYD L  RLREL+FLN+++QI L D+R+ 
Sbjct: 61  APLAAKGDTS-ERGTEVRFKPSAEIFKNIQFNYDVLAKRLRELAFLNTNIQIFLSDERTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y GG++ FV  L+R+K P+ Q        +D + +++AM+WND Y E + C+
Sbjct: 120 KT--DHFEYHGGLKGFVEDLNRNKTPIHQKIFYFVAEKDRVIVEVAMQWNDTYQEKLFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTH++G RSALTR + +Y+EK   +KK+K S  GDD REG T+VLS+KMPD
Sbjct: 178 TNNIPQRDGGTHVAGFRSALTRVLNNYIEKEGFAKKEKISTSGDDLREGLTAVLSVKMPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSE++S+VES +N+    +L E P +AK IV KV++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEIKSIVESLMNEKFQEYLLESPQDAKSIVMKVIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRK  LD+A LPGKLADC E DP +SELF+VEG+SAGGSAKQ R R+ QA+LPL+GK
Sbjct: 298 ELTRRKSALDVAGLPGKLADCQEEDPSRSELFIVEGESAGGSAKQARDRKTQAVLPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+ TLITALG GIG++ +  +KLRYH +IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVATLITALGCGIGREEYSPDKLRYHSVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148971341|gb|ABR20208.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 264/421 (62%), Positives = 330/421 (78%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+REG+I+E  + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSESLHLVIRREGHIHEQHYAHGEPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL +TGS+   TG+++ F PS++ F+  +F+YD L  RLREL+FLNS V I L D+R+ 
Sbjct: 61  APLKITGSST-TTGSQIWFKPSANTFTHIEFSYDILARRLRELAFLNSGVHIHLKDERAD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             R     Y+GGI+AFV YL+R+K  L  +   +Q  +DN+ I+L+M+WND Y EN+LCF
Sbjct: 120 --RSDIFCYEGGIKAFVEYLNRNKTVLFPTVFSMQAEKDNVGIELSMQWNDTYQENLLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G RSALTR +  Y+E+   +KK K +  GDD REG T+VLS+K+ D
Sbjct: 178 TNNIPQRDGGTHLAGFRSALTRTLNHYIEQEGFAKKAKVTTTGDDAREGLTAVLSVKVHD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV++ VES + D  + +L E+P  AK+IV K++DA+  R+AARRAR
Sbjct: 238 PKFSSQTKDKLVSSEVKAAVESALADKFNDFLLENPAVAKVIVGKMIDAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 DLTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE++RFDKMLSSQE+ TLITALG GIG + +D  K RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKSRFDKMLSSQEVATLITALGCGIGPEEYDPGKTRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|2267054|gb|AAB63492.1| gyrase B subunit [Alteromonas macleodii ATCC 27126]
          Length = 419

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 263/422 (62%), Positives = 325/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHG+GVSVVNALSS LKLRI+R G  +E  + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGLGVSVVNALSSRLKLRIRRGGKAHEQEYHHGVPT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL VTG      GT + F PSSD F+   ++YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVTGDTDKA-GTMIRFWPSSDTFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERDG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLC 275
           +       Y+GGI+AFV YL+  K P+ Q          D I++++AM+WND + ENV C
Sbjct: 120 KE--DHFMYEGGIKAFVEYLNEKKTPVHQKVFHFSIEQEDGIAVEVAMQWNDSFQENVFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEVR  VES +N+ L+ +L E+P E+KII  K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVRPAVESAMNEKLAEFLLENPAESKIIAGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITA+G GIG+D +D  KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITAVGCGIGRDEYDPEKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|152968553|gb|ABS50291.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|157683563|gb|ABV64513.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 419

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 261/422 (61%), Positives = 328/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGG  +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+  
Sbjct: 1   EVIMTVLHAGGNLDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + SY++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNSYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|67906500|gb|AAY82607.1| predicted topoisomerase IV subunit B [uncultured bacterium
           MedeBAC35C06]
          Length = 605

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 204/611 (33%), Positives = 309/611 (50%), Gaps = 16/611 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD  +  +H+I EVLDN++DE+L G+   I + L  D    V DNGRG+P D+H 
Sbjct: 1   MY---TDTTNP-NHLIQEVLDNSVDEALAGHCSKIKIILYKDQFIEVIDNGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E  IS  E+I+ +LHAG KF+   Y  SGGLHGVGVSVVNALS  L+ +IKR+   + ++
Sbjct: 57  EHKISGIELILCKLHAGAKFSGNEYNFSGGLHGVGVSVVNALSQNLEAKIKRDAKEHLIT 116

Query: 150 FINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F NG   N L V G  G  +TG+ + F P+ D F     +  +L   ++  + L   + I
Sbjct: 117 FSNGDKVNDLSVIGEVGARNTGSSIKFKPNKDYFETDKVDTKSLIKLIKAKAVLCPGLTI 176

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
              D+   +    + +++ G+++++    +    L++ PI      D  ++D  + W+  
Sbjct: 177 EFYDE--KKSFRESWYFEDGLKSYLDDAAQDLDTLLEDPIICNKEGDIQAVDFIINWSLT 234

Query: 269 YHENVL--CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
             +N L   + N IP + GG+HL+G +S     I  + +           +  DD  +  
Sbjct: 235 PSKNKLEETYVNLIPTQQGGSHLNGFKSGFLEAIKEFCDYRN-LIPKGIKLNSDDVIKDA 293

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
             V+S KM +P+F+ QTKE+L S +  S V S   D +S WL  H  E + I    + ++
Sbjct: 294 IFVISSKMQNPQFAGQTKERLDSKDHASFVSSTTKDLVSIWLNTHTEEGEKIADLAISSA 353

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R    +A     RK V+   +LPGKL+DC+ +D  ++ELFLVEGDSAGGSAKQ R R 
Sbjct: 354 QSR---AKASVNVVRKKVIKGPALPGKLSDCNSQDLNETELFLVEGDSAGGSAKQARERA 410

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAI+PLRGKILN        ++ SQEI  L TA+G   G D  D++ LRY KI I+ DA
Sbjct: 411 FQAIMPLRGKILNTWDLESTDIIKSQEIKNLSTAIGVIPGSD--DLSSLRYGKICILADA 468

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D DG HI TLL   F R    L+  G +++  PPL+ I  G  ++Y  DE+  E  +   
Sbjct: 469 DSDGLHISTLLCALFLRHFRPLVKEGRIFVSMPPLFRIDCGHEVRYALDEKEKEIIVNEF 528

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
              +        +         + + + + +D   +        +      +  +   + 
Sbjct: 529 KKKKGKPKINIQRFKGLGEMNPSQLRETV-MDPQSRKLVNLTISSSDNANSVMDLLLSKK 587

Query: 627 DQEINVSLASK 637
                     K
Sbjct: 588 RSSDRKEWLEK 598



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755
           RI+  +    +L     +I +                 I++QR+KGLGEMN SQL ET +
Sbjct: 505 RIDCGHEVRYALDEKEKEIIVNEFKKKKGKPK------INIQRFKGLGEMNPSQLRETVM 558

Query: 756 NPDTRSLLRVKITDASQADDLFSRL 780
           +P +R L+ + I+ +  A+ +   L
Sbjct: 559 DPQSRKLVNLTISSSDNANSVMDLL 583


>gi|148470234|gb|ABQ66064.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 327/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WLKL+I R+G +++M F  G+  
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLKIYRKGKVHQMEFHRGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL VTG   + TGTEV FL S D F + +++++ L  R+RELSFLN+ V+I LID+R+ 
Sbjct: 61  APLAVTG-TTDKTGTEVHFLASVDTFVLVEYHFEILAKRIRELSFLNNGVKIELIDQRTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG++ FV Y++R K  L        G +DNI++++AM+WND Y E V CF
Sbjct: 120 KS--ENFAFSGGVKGFVEYMNRTKTVLHPKVFYAIGEKDNITVEVAMQWNDSYSETVQCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGT L+GLR+A+TR +  Y+E++  +KK K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTQLTGLRTAMTRTLNQYIEQNEFAKKAKVETTGDDMREGITCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VV   V   L+ +LEE+P +AKI+  K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVQPVVSEIVAAKLAEFLEENPNDAKIVCGKIVEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGV+D   LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 EITRRKGVMDTMGLPGKLADCQEKDPAMSELYLVEGDSAGGSAKQGRDRKFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDK+L S EI TLITA+GTGIG+D F++ KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKLLGSAEIATLITAMGTGIGKDDFNLEKLRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|310781177|gb|ADP24064.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 204/398 (51%), Positives = 276/398 (69%), Gaps = 3/398 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYEKGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 395


>gi|310780901|gb|ADP23926.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780903|gb|ADP23927.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780939|gb|ADP23945.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780941|gb|ADP23946.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780943|gb|ADP23947.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780947|gb|ADP23949.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781067|gb|ADP24009.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781135|gb|ADP24043.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781137|gb|ADP24044.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781139|gb|ADP24045.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781141|gb|ADP24046.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781157|gb|ADP24054.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 205/401 (51%), Positives = 277/401 (69%), Gaps = 3/401 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK 
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKS 398


>gi|75763520|ref|ZP_00743231.1| Topoisomerase IV subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488991|gb|EAO52496.1| Topoisomerase IV subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 389

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 174/382 (45%), Positives = 251/382 (65%), Gaps = 11/382 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y+ D+IQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DN++DE+L G+
Sbjct: 1   MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I+V ++ D S +V D GRG+PT +H + G    EVI+T LHAGGKF Q  YK SGGL
Sbjct: 58  GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL + IKR+GNIYE  F N G+    L   G    ++GT + F P +
Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTK-ESGTTMHFKPDT 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  ++NY+TL  RLRE +FL   ++IS+ D+R+    E    Y+ GIEAFVSYL+  
Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  +    +   G ++ I  +LA ++NDGY EN+L F NN+  KDGGTH +G ++A+TR 
Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357
              Y  K    K+  +++ G D REG  +++S+++P+   +F  QTK KL +SE RS ++
Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352

Query: 358 SFVNDGLSAWLEEHPLEAKIIV 379
           + V++ L+ +LEE+P  A ++V
Sbjct: 353 AIVSEHLAYFLEENPDVATLLV 374


>gi|310781281|gb|ADP24116.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 201/396 (50%), Positives = 277/396 (69%), Gaps = 3/396 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L + PI ++   ++  +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNNDYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAG
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAG 393


>gi|2267062|gb|AAB63496.1| gyrase B subunit [Pseudoalteromonas carrageenovora]
          Length = 423

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 261/425 (61%), Positives = 335/425 (78%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL + G +   TGTE+ F PS + F+  DF+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAIIGDSE-TTGTELRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVL 274
           E +     Y+GGI+AFV YL+R+K P+ +        R+   IS++++M+WNDG+ EN+ 
Sbjct: 119 ENKSDHFKYEGGIQAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDGFQENIY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSI 332
           CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DA+  R+AA
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTDFLLENPMDAKIVVGKIIDAARAREAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTDADVDG+H
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSH 418

Query: 513 IRTLL 517
           IRTLL
Sbjct: 419 IRTLL 423


>gi|68138882|gb|AAY86030.1| GyrB [Burkholderia vietnamiensis]
          Length = 561

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 248/564 (43%), Positives = 352/564 (62%), Gaps = 7/564 (1%)

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++ K 
Sbjct: 1   FGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKT 58

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I 
Sbjct: 59  NLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 118

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V 
Sbjct: 119 KYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVA 178

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             L  +L E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPGKLADC E+D
Sbjct: 179 KALEEFLLETPTDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKD 238

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+LSS++I TL+TAL
Sbjct: 239 PAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTAL 298

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP ++  G++YI +PPL
Sbjct: 299 GCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMVERGYVYIAQPPL 358

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
           Y I  GK  +Y+KD+  L  +++  +L     +  ++   IS + L       L    +I
Sbjct: 359 YKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSENGAAISGDALGELARSYLLSQSVI 418

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----WHGSI 657
                 +D   +E  +     +  S +E   + A  L   L+    K+E      +    
Sbjct: 419 GRLSRLYDPAALEAIMDGVSIDL-SSEESTEASAKALHAALHDETLKNEVRVVPSYDPVR 477

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717
               + V+R   G     V++     +   +     +   E        +      + +T
Sbjct: 478 ELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTAKTFEGLIQAGAVIKRGERSMAVT 537

Query: 718 GPCSLLDTIFSIGRKGISMQRYKG 741
              S +  + +   + +S QRYKG
Sbjct: 538 DFKSAMKWLLADAERNVSKQRYKG 561


>gi|310780907|gb|ADP23929.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781083|gb|ADP24017.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781143|gb|ADP24047.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 205/400 (51%), Positives = 277/400 (69%), Gaps = 3/400 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 397


>gi|2267064|gb|AAB63497.1| gyrase B subunit [Pseudoalteromonas citrea]
          Length = 422

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 262/424 (61%), Positives = 335/424 (79%), Gaps = 5/424 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG +++ ++  G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRREGKVHQQTYSMGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +   TGTE+ F PSS+ F+  +F++D L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAAIGESE-TTGTELRFWPSSETFTDINFHFDILAKRLRELSFLNSGVSIILSDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           + +     Y GGI+AFV YL+R K P+ QS       R++  S++++M+WNDG+ EN+ C
Sbjct: 119 DNKRDHFKYDGGIQAFVEYLNRKKTPVHQSVFHFTSEREDGTSVEVSMQWNDGFQENIYC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIK 333
           FTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K +    GDD REG T+V+S+K
Sbjct: 179 FTNNIPQRDGGTHLAGFRSALTRTLNTYMEKEGFNKKAKTNSNATGDDAREGLTAVVSVK 238

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + LS +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 239 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSDFLLENPGDAKIVVSKIIDAARAREAAR 298

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++TRRKGV+D+A LPGKLADC ERDP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 299 KAREMTRRKGVMDLAGLPGKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 358

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           +GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTDADVDG+HI
Sbjct: 359 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHI 418

Query: 514 RTLL 517
           RTLL
Sbjct: 419 RTLL 422


>gi|310781203|gb|ADP24077.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 202/396 (51%), Positives = 274/396 (69%), Gaps = 3/396 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+ G IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAG
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAG 393


>gi|148971293|gb|ABR20184.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 325/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDQLQLTIHRDGKVHRQEYHLGTPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GT + F PS++IF+   FNY+ L  RLRELSFLNS V+I L+D+R  
Sbjct: 61  APLAVVGPSE-QRGTTIRFKPSAEIFTHIQFNYEILAKRLRELSFLNSGVRIELVDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E R     ++GG++AFV YL+R + P+  + +  +     ++ID+A++WND Y E++ C+
Sbjct: 118 ENRSDVFQHEGGLQAFVKYLNRSRTPVHDTVLWFKSQDGPVTIDVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK +  GDD REG T++LS+K+P+
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKESSAKKDKLTTTGDDAREGLTAILSVKLPN 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ +VE+ V   L  +L EHP EAK IV K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGIVEAAVGTKLQDFLLEHPQEAKAIVAKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE++RFDKML+S E+GTLITALG GIG+D FDI KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKSRFDKMLASAEVGTLITALGCGIGKDDFDIAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|134288296|ref|YP_001110459.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4]
 gi|134132946|gb|ABO59656.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4]
          Length = 654

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 210/665 (31%), Positives = 315/665 (47%), Gaps = 40/665 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +   YD     +L+GL+ V++ P MY   T  E+   H+I EVLDNA DE+  G+
Sbjct: 1   MTQ--EGKVYDESDFDVLEGLEPVRQVPGMY---TRTENP-MHIIQEVLDNAADEAQNGH 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119
           A  I V ++ D S TV+DNGRGIP  LH  + I    +  T+LHAG KF +  SY+ SGG
Sbjct: 55  ASRIDVIVHRDNSVTVADNGRGIPVGLHPTKQIPVVVLAYTKLHAGAKFRKGNSYQRSGG 114

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI-LDNPLVVTGSA-GNDTGTEVTFLP 177
           LHGVGV+V NALS+ +++ +KREG ++ + F++G    + + + G      TGT V   P
Sbjct: 115 LHGVGVAVTNALSTKVEVEVKREGKVHRVHFLDGDREISDVELVGDCGPRTTGTRVRAWP 174

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE------- 230
           +   F+         +  LR  + L   V ++  +  + + R        G         
Sbjct: 175 NPKYFASPQIPLAKFEELLRSKAMLMPGVTVNYRNDETGDERSWCYKDGIGDYLSERIAD 234

Query: 231 -AFVSYLDRHKKPLMQSPIRI-QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
              V  +   +  + +S   I +G     +I   +    G       + N IP   GGTH
Sbjct: 235 LELVGEVFTGQGYVAESVGSIVEGDGAKWAIAWTIESGRG-----ESYVNLIPTPLGGTH 289

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +GLR+ L   + +Y E      +   ++  +D       +LS  + + +F  QTK+KL 
Sbjct: 290 EAGLRAGLFEALKAYCEHHAMLPRG-ITLQAEDVWSHAQFILSAAVTNTQFQGQTKDKLN 348

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           S EV  ++ + V D    WL +HP  AK + +    A     A  R   +  ++    +A
Sbjct: 349 SREVVRLLSTVVRDPFDHWLIDHPEAAKKVAE---LAIRQATARARQGKVVEKRKSSGVA 405

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKL DC   D  ++ELFLVEGDSAGGSAKQ R+RE QAILPLRGKILN      D++
Sbjct: 406 TLPGKLTDCESTDITRNELFLVEGDSAGGSAKQARNREYQAILPLRGKILNTFDTARDQL 465

Query: 469 LSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            S+ E+  +  A+G    +    ++   LRY KI ++TDADVDG+HI+TLLLT FF   P
Sbjct: 466 FSNNEVHDISVAIGVDPHERGSAVDLSGLRYGKIALLTDADVDGSHIQTLLLTLFFIHFP 525

Query: 527 SLIHNGFLYIIKPPLYGIT-------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
            L+  G +YI +PPL+ I        R     Y  D+      L         E   DS 
Sbjct: 526 ELVERGHVYIAQPPLFRIDVGAQGKGRPARKIYCLDDAERMSVLRQL----ADEGVRDSA 581

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             IS+      ++     +  +        +  +    ++                S+ A
Sbjct: 582 LSISRFKGLGEMNPEQLRETTMHADTRRMLQVGVPDDGLADTLKAFHLLMAKGEAGSRRA 641

Query: 640 NRLNF 644
                
Sbjct: 642 WLEEK 646



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 7/89 (7%)

Query: 721 SLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL-- 776
           S+L  +   G +   +S+ R+KGLGEMN  QL ETT++ DTR +L+V + D   AD L  
Sbjct: 567 SVLRQLADEGVRDSALSISRFKGLGEMNPEQLRETTMHADTRRMLQVGVPDDGLADTLKA 626

Query: 777 FSRLM--GDEVEPRREFIQENSLPSALDI 803
           F  LM  G+    RR +++E    + LD+
Sbjct: 627 FHLLMAKGEA-GSRRAWLEEKGDLAELDV 654


>gi|310780929|gb|ADP23940.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780931|gb|ADP23941.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780933|gb|ADP23942.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780935|gb|ADP23943.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780969|gb|ADP23960.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780971|gb|ADP23961.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780973|gb|ADP23962.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780975|gb|ADP23963.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780977|gb|ADP23964.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780979|gb|ADP23965.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780981|gb|ADP23966.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780983|gb|ADP23967.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780985|gb|ADP23968.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780987|gb|ADP23969.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780989|gb|ADP23970.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780991|gb|ADP23971.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780993|gb|ADP23972.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780995|gb|ADP23973.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781019|gb|ADP23985.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781021|gb|ADP23986.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781025|gb|ADP23988.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781027|gb|ADP23989.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781077|gb|ADP24014.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781079|gb|ADP24015.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781089|gb|ADP24020.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781091|gb|ADP24021.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781093|gb|ADP24022.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781095|gb|ADP24023.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781097|gb|ADP24024.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781099|gb|ADP24025.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781101|gb|ADP24026.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781103|gb|ADP24027.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781105|gb|ADP24028.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781107|gb|ADP24029.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781109|gb|ADP24030.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781111|gb|ADP24031.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781113|gb|ADP24032.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781115|gb|ADP24033.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781117|gb|ADP24034.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781119|gb|ADP24035.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781121|gb|ADP24036.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781123|gb|ADP24037.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781125|gb|ADP24038.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781127|gb|ADP24039.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781145|gb|ADP24048.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781147|gb|ADP24049.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781149|gb|ADP24050.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781151|gb|ADP24051.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781153|gb|ADP24052.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781155|gb|ADP24053.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781159|gb|ADP24055.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781161|gb|ADP24056.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781163|gb|ADP24057.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781165|gb|ADP24058.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 204/399 (51%), Positives = 276/399 (69%), Gaps = 3/399 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|56409824|emb|CAH65721.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 258/423 (60%), Positives = 330/423 (78%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR+G I++  + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G    +TGT + F PS + F+  +F+Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGKTE-ETGTRIRFWPSEETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     ++GGI AFV +L+R+K P+ Q           D I++++AM+WNDG+ E V 
Sbjct: 119 EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTREEDGITVEVAMQWNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD+TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 ARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIR
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|157504497|gb|ABV58898.1| DNA gyrase B subunit [Flammeovirga yaeyamensis]
          Length = 476

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 227/474 (47%), Positives = 306/474 (64%), Gaps = 9/474 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS  LK+ + R G I++  +  GI    +   G   + T
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSKDLKVTVHRAGKIFQQEYKTGIPQYDVKQIGET-DIT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFY 225
           GT V F P   IF+   +NYDT+  RLREL++LN+ ++I   D        E  + T F 
Sbjct: 60  GTVVQFWPDLSIFTHGVYNYDTIATRLRELAYLNAGIKIHFKDLRQKDEEGEYIQETFFS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  +V YLD  +  L+  PI ++G + NI + +AM +N  Y ENV  + NNI   +G
Sbjct: 120 EGGLSEYVMYLDSTRTSLLPDPIFMEGEKANIQVQVAMTYNTSYSENVFSYVNNINTYEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R +LTR + SY +++    K K  + GDD REG TS++S+K+P+P+F  QTK 
Sbjct: 180 GTHVAGFRRSLTRTLKSYADQTGLLDKVKVDISGDDFREGLTSIISVKVPEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SEV   V+S V + L  +LEEHP EAK IV+KV+ A+  R AAR+AR++ +RK VL
Sbjct: 240 KLGNSEVAGAVDSAVTETLKTFLEEHPKEAKNIVQKVITAAQARHAARKAREMVQRKNVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKL+DC+E+DP   EL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A+ 
Sbjct: 300 TGTGLPGKLSDCTEKDPAACELYLVEGDSAGGSAKQGRDRMFQAILPLKGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  +ITALG   G ++ +      KLRYHKIIIMTDADVDG+HIRTL+LT F
Sbjct: 360 HKIYDNEEIKNIITALGVRFGTENDEKELNLEKLRYHKIIIMTDADVDGSHIRTLILTLF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FR M  LI  G+LYI +PP Y + +GK  +Y   EE     +      E     
Sbjct: 420 FRYMKPLIEQGYLYIAQPPFYLVKKGKQEKYCWSEEDRIRAIQEFGGDEGKVNV 473


>gi|9971379|dbj|BAB12496.1| DNA gyrase B subunit [Microscilla marina]
          Length = 478

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 219/465 (47%), Positives = 312/465 (67%), Gaps = 9/465 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +Y+VSGGLHGVGVS VNALS+ L+  + REG I++  +  G     + V G + + T
Sbjct: 1   DKDTYQVSGGLHGVGVSCVNALSTLLRATVHREGKIFQQEYKQGDPQTEVEVIGES-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFY 225
           GT + F+P + IF+  ++ Y+T+  RLRELS+LN  ++++++D R      +        
Sbjct: 60  GTVIHFVPDATIFTAIEYKYETISQRLRELSYLNKGIRLTMVDHRVKGEDGKALTEDFLS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV YLD  ++  +  PI ++G +  + + +A  +N  Y ENV  + NNI   +G
Sbjct: 120 EGGLTEFVRYLDETRQSFLPEPIYVEGEKSGVPVQVAFTYNHSYSENVYSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH+SG R ALTR + SY +K    +K K  V GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHISGFRRALTRTLKSYADKEGMLEKAKVDVTGDDFREGLTAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SEV  VV++  ++ LS +LEE+P +AK I++KV+ A+  R AAR+AR++ +RK VL
Sbjct: 240 KLGNSEVMGVVDNATSEALSKFLEENPKQAKSIIQKVILAAQARHAARKAREMVQRKNVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             + LPGKLADCSE+DP   EL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A+ 
Sbjct: 300 SGSGLPGKLADCSEKDPGLCELYLVEGDSAGGSAKQGRDRNTQAILPLRGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  +ITALG   G+D      ++ KLRYHKIIIMTDADVDG+HIRTL+LTFF
Sbjct: 360 YKIYDNEEIKNIITALGVTFGKDDDDKALNMEKLRYHKIIIMTDADVDGSHIRTLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           FR M  LI +G++YI  PP Y + +GK   Y  +++  +  +   
Sbjct: 420 FRYMRDLIESGYVYIALPPFYLVKKGKKELYAWNDDDRDVAIKEL 464


>gi|161898002|gb|ABX80110.1| DNA gyrase subunit B [Streptomyces swartbergensis]
          Length = 483

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 227/486 (46%), Positives = 313/486 (64%), Gaps = 22/486 (4%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIG T GE GLHH++ EV+DN++DE+L GYAD I VT+  DG   V DNGRGIP  +
Sbjct: 1   PGMYIGST-GERGLHHLVQEVVDNSVDEALAGYADTIDVTILADGGVRVVDNGRGIPVGI 59

Query: 88  HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
              EG  A EV++T LHAGGKF    Y VSGGLHGVGVSVVNALS+ + + IK +G  + 
Sbjct: 60  VPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTKVSVEIKTDGYRWT 119

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
             +  G+   PL       ++ GT VTF    DIF   D++++TL  R +E++FLN  ++
Sbjct: 120 QDYKLGVPTAPLAK-HEPTDEHGTTVTFWADPDIFETTDYSFETLSRRFQEMAFLNKGLR 178

Query: 208 ISLIDKRS----------------PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRI 250
           I+L D+R                  E + ++  Y+GGI  FV Y   R  + +  + I +
Sbjct: 179 INLTDERESAKATAGADEAGEDEKHEVKHVSYHYEGGIVDFVKYLNSRKGEAVHPTVIDL 238

Query: 251 QGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
           +       +S+++AM+WN GY E V  F N I   +GGTH  G R+ALT  I  Y     
Sbjct: 239 EAEDKDRQLSLEVAMQWNSGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKR 298

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             ++   ++ GDD REG T+++S+K+ +P+F  QTK KL ++EV++ V+  V + L+ WL
Sbjct: 299 LLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQRVVYEHLNDWL 358

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           + +P EA  IV+K + A+  R AAR+ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F
Sbjct: 359 DRNPNEAADIVRKGIAAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIF 418

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D++L +QEI  +I+A GTG+ +D
Sbjct: 419 IVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHED 478

Query: 489 SFDINK 494
            FDI K
Sbjct: 479 -FDIEK 483


>gi|198283802|ref|YP_002220123.1| DNA topoisomerase IV subunit B [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666865|ref|YP_002426433.1| DNA topoisomerase IV, subunit B [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248323|gb|ACH83916.1| DNA topoisomerase (ATP-hydrolyzing) [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519078|gb|ACK79664.1| DNA topoisomerase IV, subunit B [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 656

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 209/558 (37%), Positives = 282/558 (50%), Gaps = 31/558 (5%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SY A+   +LKGL+ VK RP MY   T       H+I EV+DNA DE+L G A  I VT+
Sbjct: 2   SYSAEQFTVLKGLEPVKLRPGMYTRTTCPT----HVIQEVIDNAADEALAGQATRIDVTV 57

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ----KSYKVSGGLHGVG 124
             DGS  V DNGRGIP  +   E   AAE+  T LHAGGKF++     +Y+ SGGLHGVG
Sbjct: 58  CEDGSVIVEDNGRGIPVGIPPGESRPAAELAFTTLHAGGKFDKTDVESAYRFSGGLHGVG 117

Query: 125 VSVVNALSSWLKLRIK-REGN-----IYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLP 177
           V+V NALS  +++ IK R+        Y + F  G +   L      G  T GT V   P
Sbjct: 118 VAVTNALSQRVEVEIKTRDPQGSGNGRYRLVFTQGDVSEALTRLEDCGPRTHGTRVQVWP 177

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
               F     N   L H LR  + L   +Q+SL                    A +    
Sbjct: 178 DGQYFDSAKINIRELTHLLRAKAILLPGLQVSLTLPEQEPLVWKYSEGLAEYLAGIVADI 237

Query: 238 RHKKPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
               P+        G  +          A+ W +G   N   + N IP  DGGTH SG R
Sbjct: 238 ELATPIFAGASYQDGDSNGFAKGEGAGWALCWINGAAPNPETYVNLIPTLDGGTHESGFR 297

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           + +   + S++E        K  ++ DD       VLS ++ DP+F  QTK+KL S +  
Sbjct: 298 AGVFEAVRSFMEHH-SLVPAKLKLVQDDVTGKMALVLSARVLDPQFQGQTKDKLTSRDAH 356

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            ++   V D L  WL  HP   K I    +  +  R    RA     RK    +A+LPGK
Sbjct: 357 KLMAQTVRDPLELWLNSHPGAGKAIADLAIQNAQAR---TRAAQKIERKKGSGLATLPGK 413

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC   D +++ELFLVEGDSAGGSAK  R +E QA+LPLRGK+LN      D++  +QE
Sbjct: 414 LTDCESEDIQRNELFLVEGDSAGGSAKAARDKEYQALLPLRGKVLNTWEVDADQIFKNQE 473

Query: 474 IGTLITALGTGIGQDSFDIN------KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +  A+  GI    F  +       LRY KI+I++DADVDG+HI+ L+LT F R  P+
Sbjct: 474 VHNM--AVALGIEAHGFQADPDRVLAGLRYGKIMILSDADVDGSHIQVLILTLFLRHFPA 531

Query: 528 LIHNGFLYIIKPPLYGIT 545
           L+  G ++++KPPLY + 
Sbjct: 532 LLQRGHVFVVKPPLYRVD 549



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 16/107 (14%)

Query: 710 NGDKIKITGPCSL-----LDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSL 762
            G   KI           +D + + G K   IS+QR+KGLGEMN  QLWET++ PDTRSL
Sbjct: 553 RGKARKIYCEAEAERDAAIDRLRTEGVKESAISVQRFKGLGEMNPDQLWETSMCPDTRSL 612

Query: 763 LRVKITDASQADDL-----FSRLMGDEVE-PRREFIQENSLPSALDI 803
           + + +   + AD       FS LM  +    RRE+++ +   + +DI
Sbjct: 613 VPLSM---TAADQAALHTRFSLLMAKQSAGGRREWMERDGWTADIDI 656


>gi|56409814|emb|CAH65716.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 258/423 (60%), Positives = 330/423 (78%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR+G I++  + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G    +TGT + F PS + F+  +F+Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGKTE-ETGTXIRFWPSEETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     ++GGI AFV +L+R+K P+ Q           D I++++AM+WNDG+ E V 
Sbjct: 119 EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTREEDGITVEVAMQWNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD+TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 ARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIR
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|310781239|gb|ADP24095.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781241|gb|ADP24096.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781243|gb|ADP24097.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781259|gb|ADP24105.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781261|gb|ADP24106.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 203/401 (50%), Positives = 277/401 (69%), Gaps = 3/401 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++N+ Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNNSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK 
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKS 398


>gi|148971333|gb|ABR20204.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 246/421 (58%), Positives = 317/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS  L L I+  G IYE  + +G   
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSEELHLVIRMNGKIYEQYYHHGEPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +  + GTEV F PS++ F    F+YD L  RLREL+FLNSS++I L D+R+ 
Sbjct: 61  APLATIGESS-EHGTEVRFKPSAETFKNIQFHYDVLAKRLRELAFLNSSIRIYLTDERTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y GG++ FV  L+R+K P+          +D +++++AM+WND Y E + C+
Sbjct: 120 KN--EIFEYHGGLKGFVEDLNRNKTPIHSKIFYFNAEKDKVTVEVAMQWNDTYQEKLFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTH++G RS LTR + +Y+EK   +K++K +  GDD REG T+VLS+KMP+
Sbjct: 178 TNNIPQRDGGTHVAGFRSGLTRVLNNYIEKEGYAKREKVATSGDDLREGLTAVLSVKMPN 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FS+QTK+KLVSSE++S+VES +N+    +L E+P +AK IV KV++A+  R+AAR+AR
Sbjct: 238 PKFSAQTKDKLVSSEIKSIVESLMNEKFQEFLMENPQDAKGIVSKVIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRK  LD+A LPGKLADC E DP KSELF+VEGDSAGGSAKQ R R+ QA+LPL+GK
Sbjct: 298 ELTRRKSALDVAGLPGKLADCQEEDPTKSELFIVEGDSAGGSAKQARDRKTQAVLPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+ TLITALG GIG + +  +KLRYH IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVATLITALGCGIGCEEYSPDKLRYHSIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|222103621|gb|ACM44319.1| GyrB [Shewanella sp. S2]
          Length = 419

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 255/422 (60%), Positives = 330/422 (78%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS   FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEQTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|148971369|gb|ABR20222.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 247/421 (58%), Positives = 319/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS  L L I+  G IYE  + +G   
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSEELHLVIRMNGKIYEQYYHHGEPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +  + GTEV F PS++ F    F+YD L  RLREL+FLNSS++I L D+R+ 
Sbjct: 61  APLATIGESS-EHGTEVRFKPSAETFKNIQFHYDVLAKRLRELAFLNSSIRIYLTDERTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y GG++ FV  L+R+K P+          +D +++++AM+WND Y E + C+
Sbjct: 120 KN--EIFEYHGGLKGFVEDLNRNKTPIHSKIFYFNAEKDKVTVEVAMQWNDTYQEKLFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTH++G RS LTR + +Y+EK   +K++K +  GDD REG T+VLS+KMP+
Sbjct: 178 TNNIPQRDGGTHVAGFRSGLTRVLNNYIEKEGYAKREKVATSGDDLREGLTAVLSVKMPN 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FS+QTK+KLVSSE++S+VES +N+    +L E+P +AK IV KV++A+  R+AAR+AR
Sbjct: 238 PKFSAQTKDKLVSSEIKSIVESLMNEKFQEFLMENPQDAKGIVSKVIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRK  LD+ASLPGKLADC E DP KSELF+VEGDSAGGSAKQ R R+ QA+LPL+GK
Sbjct: 298 ELTRRKSALDVASLPGKLADCQEEDPTKSELFIVEGDSAGGSAKQARDRKTQAVLPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+ TLITALG GIG++ +  +KLRYH IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVATLITALGCGIGREEYSPDKLRYHSIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148470198|gb|ABQ66047.1| gyrase b [uncultured bacterium]
 gi|148971367|gb|ABR20221.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 254/421 (60%), Positives = 316/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS+WLKL I R+G  + M F  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ FLPS   F   +F+YD L  RLRELSFLN+ V I L D R  
Sbjct: 61  APLAVVGDSP-KRGTEIHFLPSPLTFGTIEFHYDILARRLRELSFLNNGVSILLKDLRHG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG+  FV YL+R +  L  +     G ++ I++++AM+WN+ Y ENVLCF
Sbjct: 120 QE--ENFSFNGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGITVEVAMQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+A+TR +  ++E++  ++K K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR  VE  V+D + ++L E P EA+IIV K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD   LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 ELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++SSQEI TLITALGTGIG+D +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|30680397|ref|NP_850762.1| DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase
           II, putative / DNA gyrase, putative [Arabidopsis
           thaliana]
 gi|332003318|gb|AED90701.1| DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 519

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 180/435 (41%), Positives = 270/435 (62%), Gaps = 11/435 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +   +  Y ++ IQ+L+GLD V+KRP MYIG T G  GLHH++YE+LDNAIDE+  GYA 
Sbjct: 84  ETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGYAS 142

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120
            + V L+ DGS +V DNGRGIPTDLH     S+ E ++T LHAGGKF   S  Y VSGGL
Sbjct: 143 KVDVVLHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGL 202

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLP 177
           HGVG+SVVNALS  L++ + R+G  ++ ++  G     L        +    GT + F P
Sbjct: 203 HGVGLSVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWP 262

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFVS 234
             ++F+   +F+++T+  R+REL+FLN  V ISL  +     + +     + GG+  +VS
Sbjct: 263 DKEVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVS 322

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+  K P+       +   +  ++D+A++W  D Y + +L + N+I   DGGTH+ G++
Sbjct: 323 WLNTDKNPIHDVLG-FRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 381

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR + +  +KS   K+   S+ G+  REG T ++S+K+P+P F  QTK +L + EVR
Sbjct: 382 ASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVR 441

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V+  V + L+ +LE HP   + I+ K L+A     AA+RAR+L R K VL  +SLPGK
Sbjct: 442 KIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGK 501

Query: 414 LADCSERDPKKSELF 428
           LADCS  DP+ S ++
Sbjct: 502 LADCSSTDPEVSGMY 516


>gi|310781245|gb|ADP24098.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781247|gb|ADP24099.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 203/400 (50%), Positives = 277/400 (69%), Gaps = 3/400 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++N+ Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNNSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 397


>gi|310781251|gb|ADP24101.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 202/399 (50%), Positives = 276/399 (69%), Gaps = 3/399 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++N+ Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNNSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|148971417|gb|ABR20246.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 251/422 (59%), Positives = 328/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+ V G +   TGT + F PS++ F    F++D L  R+RELSFLNS V I L D+RS 
Sbjct: 61  APMAVVGESE-TTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GG+ AFV YL+ +K P+          RD+ + +++A++WND ++EN+LC
Sbjct: 120 KE--EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNIQRDDGVGVEVALQWNDSFNENLLC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RS+LTR + +Y+E+   +KK+K +  GDD REG T+++S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSSLTRSLNNYIEQEGLAKKNKVATTGDDAREGLTAIISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  +N   + +L E+P EAK +V K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+G
Sbjct: 298 REMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKM+SSQE+GTLITALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|284953788|gb|ADC32367.1| gyrase B subunit [Vibrio sp. WH134]
          Length = 420

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 255/422 (60%), Positives = 334/422 (79%), Gaps = 3/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+++  ++ +G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELVINRGGSVHTQTYCHGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL V G   + TGT + F PS++ F+  +F+YD L  RLRELSFLNS + I LID+R  
Sbjct: 61  SPLAVIGET-DTTGTFIRFWPSAETFANIEFHYDILAKRLRELSFLNSGISIKLIDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E +     Y+GGI+AFV +L+ +K P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 119 EDKNDHFMYEGGIQAFVEHLNTNKTPIHEKVFHFDFEREDGIAVEVAMQWNDGFQENIYC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR I ++++K   SKK+K S  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRAALTRTINTFMDKEGFSKKEKTSTSGDDAREGLTAVVSVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VES + + L+ +L E+P EAK +  K++DA+  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKSAVESVMGEKLTDFLIENPNEAKTVCSKIIDAARAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH +IIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNVIIMTDADVDGSHIRT 418

Query: 516 LL 517
           LL
Sbjct: 419 LL 420


>gi|148971315|gb|ABR20195.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 325/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS  L L I+R G IYE ++ +GI D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKISGGLHGVGVSVVNALSEELHLTIQRNGKIYEQNYHHGIPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL +TG A   TGT++ F PS++ FS  +F+YD L  RLRELSFLNS + I L D+R  
Sbjct: 61  APLTITGDAS-TTGTQIWFKPSAETFSNIEFHYDILAKRLRELSFLNSVITIELTDERVQ 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +   I M  +  ++  ++  +R+K P++     +   +D I ++LAM+WND Y E + CF
Sbjct: 120 KKMYIVMRVE--LKRLLNISNRNKNPIIPEVFTLNSEKDRIQVELAMQWNDSYQETIYCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R+ALTR + +Y+E    +KK K S  GDD REG T+ LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRAALTRTLNNYIENEGYAKKAKVSTTGDDSREGLTAALSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV++VVES V D  + +L E+P  AK+IV K++DA+  R+AARRAR
Sbjct: 238 PKFSSQTKDKLVSSEVKTVVESVVADKFNDFLLENPNIAKVIVNKIIDAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKML+SQE+ TLITALG GIG D +D +K+RYH++I+MTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLASQEVATLITALGCGIGPDEYDPDKVRYHRVIMMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|332284681|ref|YP_004416592.1| DNA topoisomerase IV subunit B [Pusillimonas sp. T7-7]
 gi|330428634|gb|AEC19968.1| DNA topoisomerase IV subunit B [Pusillimonas sp. T7-7]
          Length = 640

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 208/594 (35%), Positives = 292/594 (49%), Gaps = 30/594 (5%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           +KGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L G+   I VTL+ DGS +V 
Sbjct: 1   MKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNAADEALAGFGTSIKVTLHTDGSVSVE 56

Query: 78  DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVSGGLHGVGVSVVNALSSW 134
           D+GRGIP  LH EE     E++ TRLHAGGKF++KS   Y  SGGLHGVGVSV NALS+ 
Sbjct: 57  DDGRGIPVGLHPEEHAPVVELVFTRLHAGGKFDKKSAGAYAFSGGLHGVGVSVTNALSTR 116

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
           L++R+ R G  +E+ F +G +   L      +   TGT V   P    F         L 
Sbjct: 117 LEVRVWRGGATHELIFADGAVHTSLQELDPVSRKKTGTRVRVWPDPKYFDSAALPLAELI 176

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYK-GGIEAFVSYLDRHKKPLMQSPIRIQG 252
           H LR  + L + ++++L  +++ E RE        G             PL +       
Sbjct: 177 HALRSKAVLLNGIKVTLTIEKTGETREWQYQEGLRGYLEEALGDTEKIIPLFEGKQYAAD 236

Query: 253 SRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             ++          + W          + N I    GGTH +GLR  L   + S+ E   
Sbjct: 237 DDESYAAGEGAQWVIAWTLDGPVVRESYVNLIATTAGGTHEAGLRDGLFNAVKSFAELH- 295

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
                   ++ +D     + VLS K+ DP+F  Q KEKL S +   +V  FV + L  WL
Sbjct: 296 SLIPKGVKLLAEDVFARASFVLSAKVLDPQFQGQIKEKLNSRDAVRLVGGFVKNALDLWL 355

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
             +    K +    +       A  R+     ++    +A LPGKL DC   D  ++ELF
Sbjct: 356 NANVEYGKKLADAAIRQ---AQARARSSKKVEKRKSSGVAVLPGKLTDCESDDVSRTELF 412

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGGSAK GR +E QAILPLRGK+LN      D++ ++ EI  +  A+G      
Sbjct: 413 LVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFANNEIHDISVAIGVDPHGP 472

Query: 489 SFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT- 545
           +   +   LRY +I I++DADVDG+HI+ LLLT FFR  P LI  G +YI +PPL+ +  
Sbjct: 473 NDAPDLSGLRYGRICILSDADVDGSHIQVLLLTLFFRHFPKLIDAGNVYIARPPLFRVDV 532

Query: 546 -----RGKSLQYVKDEESLEDYLINQSLS-----EEIELFCDSKGVISKNDLRN 589
                R     Y  D+  L+                        G +S   L +
Sbjct: 533 PAAGKRPARKVYCLDQGELDVVQDKLRKEGVREGSWSISRFKGLGEMSAEQLWD 586



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 13/89 (14%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA------SQADD 775
           D +   G +    S+ R+KGLGEM+A QLW+TT+NPDTR L+ V    A      +   D
Sbjct: 556 DKLRKEGVREGSWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPV----ACGELGTAGTTD 611

Query: 776 LFSRLMGD-EVEPRREFIQENSLPSALDI 803
           +F  LMG  E   RR +++E    + +D+
Sbjct: 612 MFDMLMGKGESAQRRIWLEEKGNLAEIDV 640


>gi|310780927|gb|ADP23939.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780967|gb|ADP23959.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781007|gb|ADP23979.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 203/398 (51%), Positives = 275/398 (69%), Gaps = 3/398 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGS
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGS 395


>gi|119369954|gb|ABL67991.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 255/421 (60%), Positives = 323/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G ++E ++ +G  D
Sbjct: 1   EVIMTVLHAGGKFDSNSYKVSGGLHGVGVSVVNALSEELSLTIWRDGYVHEQTYHDGEPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL  TG      GTE+ F PS++ F+  +F+Y+ L  RLRELSFLNS V+I LID+RS 
Sbjct: 61  APLKPTGPT-QQRGTEIKFKPSANTFTQIEFHYEILAKRLRELSFLNSGVKIELIDERSG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI AFV +L+R K P+  +       +D+I++++A+RWND + E + CF
Sbjct: 120 KS--DIFEYQGGIRAFVEHLNRMKNPIHPTVFYFSQEKDHINVEVAIRWNDSFQETLFCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGG+HL+GLRSALTR +  Y+E    +KK K    G+D REG T+VLS+K+ D
Sbjct: 178 TNNIPQRDGGSHLAGLRSALTRTLNQYIEAEGLAKKHKIDTNGEDIREGLTAVLSVKVQD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSS+V+ VVES VN+ L  +L E+P +AK IV K++DA   R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSDVKPVVESLVNEKLQDYLLENPQQAKAIVMKIIDAGRAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++ RRK  LDIA LPGKLADC E+DP  SELFLVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMNRRKSALDIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKM++SQE+GTLITALG GIG+D ++ +K+RYH+III TDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMIASQEVGTLITALGCGIGRDEYNPDKIRYHRIIIKTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|13517029|dbj|BAB40397.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04466]
          Length = 474

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 217/465 (46%), Positives = 307/465 (66%), Gaps = 10/465 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G + + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHRDGKIWEQEYERGKTMYPVKTVGDS-DRT 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P   IF    ++NYDTL  R+REL++LN  + + L+D+R  +        T  
Sbjct: 60  GTIVTFKPDPQIFQQTLEYNYDTLASRMRELAYLNKGITVHLVDRRHKKEDGSFEGETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G+  FV +LD +++PLM+  I  +G ++ + +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SENGLPEFVKFLDGNREPLMKDVISFEGEKNGVPVEVAMVYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADNSGMLDKLKFDISGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVSASVSQAVSEMLTDYLEEHPEDAKAIVQKVILAAQARHAAQKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP+K EL+LVEGDSAGG+AK GR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPEKCELYLVEGDSAGGTAKAGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +      +++KLRYHKI+IM DAD+DG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIFTALGVTIGTEEDPRALNLSKLRYHKIVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           FFR M  L+ NG +YI  PPLY + +G   QYV  ++  ++ +  
Sbjct: 420 FFRYMRELVENGHVYIATPPLYLVKKGSKKQYVWSDKERDEIIGQ 464


>gi|324039416|dbj|BAJ78461.1| DNA gyrase subunit B [Alcanivorax sp. 3-1-1]
          Length = 389

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 224/392 (57%), Positives = 294/392 (75%), Gaps = 4/392 (1%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHHM++EV+DN+IDE+L G+   I V ++ D S ++ DNGRGIPT++H+EEG+SAAEVI
Sbjct: 1   GLHHMVFEVVDNSIDEALAGFCSEIKVVIHPDESMSIQDNGRGIPTEMHEEEGVSAAEVI 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL
Sbjct: 61  MTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPL 120

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G   + +GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+RS +  
Sbjct: 121 EVVG-TTDSSGTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE- 178

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                Y+GG+ AFVSYL+ +K PL Q      +   D I++++AM+WND Y EN+ CFTN
Sbjct: 179 -DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCFTN 237

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+G R+ALTR + SY++K    KK+K S  GDD REG T+V+S+K+PDP+
Sbjct: 238 NIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPK 297

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++
Sbjct: 298 FSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREM 357

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           TRRKG LDIA LPGKLADC ++DP  SEL++V
Sbjct: 358 TRRKGALDIAGLPGKLADCQQKDPALSELYIV 389


>gi|148971427|gb|ABR20251.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 265/421 (62%), Positives = 327/421 (77%), Gaps = 2/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L + R+G+IYE  + +G  D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLNVHRDGHIYEQHYHHGTPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           NP+ VTG    D+GT + F PSSD F+  +F+YD L  RLRELSFLNS V I   D  S 
Sbjct: 61  NPIAVTGDTT-DSGTSIWFKPSSDTFTNINFHYDILAKRLRELSFLNSGVCICF-DWMSA 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
              +I    KGGI+AFV +L+R+K P+M     + G +D+++++L+M+WND Y EN+ CF
Sbjct: 119 VGNKINFNMKGGIKAFVEHLNRNKNPIMPEVFSMTGVKDDVTVELSMQWNDSYQENIFCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R ALTR + +Y+E    +KK K + IGDD REG T+VLS+K+ D
Sbjct: 179 TNNIPQKDGGTHLAGFRGALTRTLNNYIESEGYAKKAKVTTIGDDAREGLTAVLSVKVHD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV++ VES V++    +L E P  AK IV K+++A+  R+AARRAR
Sbjct: 239 PKFSSQTKDKLVSSEVKAAVESLVSEYFHNFLLERPTIAKTIVNKMIEAARAREAARRAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 299 DMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSSQE+ TLITALG GIG D +D +K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 359 ILNVEKARFDKMLSSQEVATLITALGCGIGPDEYDPDKIRYHRIIIMTDADVDGSHIRTL 418

Query: 517 L 517
           L
Sbjct: 419 L 419


>gi|2267074|gb|AAB63502.1| gyrase B subunit [Pseudoalteromonas rubra]
          Length = 423

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 262/425 (61%), Positives = 333/425 (78%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG +YE  +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +   TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAAIGDSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVL 274
           E +     Y+GGI AFV YL+R+K P+ +        R+   IS++++M+WND + EN+ 
Sbjct: 119 ENKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDAFRENIY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSI 332
           CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DA+  R+AA
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDAARAREAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTDADVDG+H
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSH 418

Query: 513 IRTLL 517
           IRTLL
Sbjct: 419 IRTLL 423


>gi|148971283|gb|ABR20179.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 324/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDQLQLTIHRDGKVHRQEYHLGTPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GT + F PS++IF+   FNY+ L  RLRELSFLNS V+I L+D+R  
Sbjct: 61  APLAVVGPSE-QRGTTIRFKPSAEIFTHIQFNYEILAKRLRELSFLNSGVRIELVDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E R     ++GG++AFV YL+R + P+  + +  +     ++I++A+ WND Y E++ C+
Sbjct: 118 ENRSDVFQHEGGLQAFVKYLNRSRTPVHDTVLWFKSQDGPVTIEVALYWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK +  GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKESSAKKDKLTTTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ +VE+ V   L  +L EHP EAK IV K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGIVEAAVGTKLQDFLLEHPQEAKAIVAKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE++RFDKML+S E+GTLITALG GIG+D FDI KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKSRFDKMLASAEVGTLITALGCGIGKDDFDIAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|2267078|gb|AAB63504.1| gyrase B subunit [Pseudoalteromonas undina]
          Length = 423

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 261/425 (61%), Positives = 332/425 (78%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG +YE  +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +   TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAAIGDSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVL 274
           E +     Y+GGI AFV YL+R+K P+ +        R+   I ++++M+WND + EN+ 
Sbjct: 119 ENKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHEREEDGIGVEVSMQWNDAFQENIY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSI 332
           CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DA+  R+AA
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDAARAREAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTDADVDG+H
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSH 418

Query: 513 IRTLL 517
           IRTLL
Sbjct: 419 IRTLL 423


>gi|222103613|gb|ACM44315.1| GyrB [Shewanella xiamenensis]
          Length = 419

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 254/422 (60%), Positives = 330/422 (78%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS   FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEQTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH I+IMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|148470236|gb|ABQ66065.1| gyrase b [uncultured bacterium]
          Length = 423

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 220/423 (52%), Positives = 300/423 (70%), Gaps = 6/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ +YKVSGGLHGVGVS VNALS  + + + + G I+EM F  G   
Sbjct: 1   EVIMTVLHAGGKFDKSTYKVSGGLHGVGVSCVNALSKNMVVEVSQNGKIFEMHFSKGKPT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L VTG   +  GT+VTF P   IF+V  ++YD L  RLREL+FLN  + I   D+R  
Sbjct: 61  KLLTVTGET-DKHGTKVTFWPDDTIFTVTVYDYDILLRRLRELAFLNKGLTIHFRDERED 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHEN 272
           +   +T  Y+GG+ +FV YL+ +K PL   PI I GS+++    +  ++ M+WND Y EN
Sbjct: 120 KSD-VTFCYEGGVRSFVEYLNENKVPLFPKPIYIHGSKESSDGVVEFEVGMQWNDTYTEN 178

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  + NNI  + GGTH++G  +ALTR +  Y++     K DK ++ GDD REG T+V+S+
Sbjct: 179 LHSYVNNISTRQGGTHVTGSSTALTRVLNQYIKSHNLQKSDKMAITGDDMREGLTAVISV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+F  QTK++L +SEV S+V+  V + L+ +LEE+P+ +++IV+K + A+  R+AA
Sbjct: 239 KVPNPQFEGQTKQRLGNSEVASIVQQIVGEELTIFLEENPVVSRMIVEKAILAAQAREAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LT RK  LD A LPGKL DC ERDP   E+++VEGDSAGGSAK GR R  QA+LP
Sbjct: 299 RKARELTLRKTALDSARLPGKLTDCQERDPALCEIYIVEGDSAGGSAKTGRDRRFQAVLP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE+AR +K+L + E+G +I A G GIG D+F + KLRYHKIIIMTDADVDG+H
Sbjct: 359 IRGKILNVEKARLEKILQNTEVGAMIAAFGCGIGHDNFSLEKLRYHKIIIMTDADVDGSH 418

Query: 513 IRT 515
           IRT
Sbjct: 419 IRT 421


>gi|119369980|gb|ABL68004.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 322/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS +L L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT + F PS+ IF+   FN+D L  RLRELSFLNS V+I LID+R  
Sbjct: 61  APLAPVGPSE-QRGTTIRFKPSAQIFTHIQFNHDILAKRLRELSFLNSGVRIELIDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E       ++GG++AFV YL+R + P+ +S    +     ++I++A++WND Y E++ C+
Sbjct: 118 ENTSDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPVTIEVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK    GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ +VE+ V+  L  +L EHP +AK I+ K+L+A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|119369942|gb|ABL67985.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 255/421 (60%), Positives = 323/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS +L L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT + F PS+ IF+   FN+D L  RLRELSFLNS V+I LID+R  
Sbjct: 61  APLAPVGPSE-QRGTTIRFKPSAQIFTHIQFNHDILAKRLRELSFLNSGVRIELIDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E       ++GG++AFV YL+R + P+ +S    +     ++I++A++WND Y E++ C+
Sbjct: 118 ENTSDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPVTIEVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK +  GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKTATTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSE++ +VE+ V+  L  +L EHP +AK I+ K+L+A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEIKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|222103617|gb|ACM44317.1| GyrB [Shewanella aquimarina]
          Length = 419

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 260/422 (61%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+R+G +YE  +  G  D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRRDGKLYEQFYTMGEPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A  +TGTE+ F PS++ FS   F++D L  R+RELSFLNS V I LID+R  
Sbjct: 61  APIAEIGEAT-NTGTEIRFWPSAETFSDTQFHFDILAKRVRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+ +K P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 120 KD--EFFKYEGGISAFVDYLNLNKTPVNKEIFHFVQEREDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G RSALTR + SY++K   +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRSALTRNLNSYMDKEGFNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  + + L  +L E+P EAK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D +K RYH I+IMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|88824783|gb|ABD52437.1| gyrase B [Escherichia coli]
          Length = 419

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 261/421 (61%), Positives = 328/421 (77%), Gaps = 4/421 (0%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   
Sbjct: 2   VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQA 61

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           PL VTG     TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  
Sbjct: 62  PLAVTGETE-KTGTVVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG 120

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CF
Sbjct: 121 KE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PD
Sbjct: 179 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR
Sbjct: 239 PKFSSQTKDKLVSSEVKSAVELQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 299 EMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTL
Sbjct: 359 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTL 418

Query: 517 L 517
           L
Sbjct: 419 L 419


>gi|148470298|gb|ABQ66096.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 258/421 (61%), Positives = 317/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSSWLKL I R G  Y M F +G   
Sbjct: 1   EVIMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSSWLKLTIHRGGKRYFMEFRHGDPT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL + G++    GTEV FL S++ F   +F+YD L  RLRELSFLN  V I L D R+ 
Sbjct: 61  APLAMVGNSE-RRGTEVHFLASAETFDTVEFHYDILAKRLRELSFLNHGVSIFLKDMRTD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             ++ T  + GG+  FV YL+R +  +  S     G RD +++++A++WN+ Y ENVLCF
Sbjct: 120 --QQETFSFSGGVRGFVEYLNRTRSVIHPSIFHASGERDGMTVEVAIQWNETYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+ALTR +  ++  +  +KK K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTALRAALTRTMNQFMVDNEIAKKSKIETSGDDMREGLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR VVE  V+D L  +L E+P E K+I+ K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPVVEDVVSDRLKDFLLENPQETKVIIGKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGV D   LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 EMTRRKGVFDGLGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK+LSSQEI TLITALGTGIG + +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLLSSQEIVTLITALGTGIGAEEYMPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|222103619|gb|ACM44318.1| GyrB [Shewanella aquimarina]
          Length = 419

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 258/422 (61%), Positives = 327/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+R+G +YE  +  G  D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRRDGKLYEQFYTMGEPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A  +TGTE+ F PS + FS   F++D L  R+RELSFLNS V I LID+R  
Sbjct: 61  APIAEIGEAT-NTGTEIRFWPSPETFSDTLFHFDILAKRVRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+ +K P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 120 KD--EFFKYEGGISAFVDYLNLNKTPVNKEIFHFVQEREDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + SY++K   +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAALTRNLNSYMDKEGFNKKGKASATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  + + L  +L E+P EAK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+  LITALG GIG+D +D +K RYH I+IMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVAALITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|56409828|emb|CAH65723.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 257/423 (60%), Positives = 329/423 (77%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR+G I++  + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G    +TGT + F PS + F+  +F+Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGKTE-ETGTRIRFWPSEETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     ++GGI AFV +L+R+K P+ Q           D I++++AM+WNDG+ E V 
Sbjct: 119 EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTREEDGITVEVAMQWNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD+TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 ARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVDG+HIR
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVDGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|161327351|gb|ABX60538.1| GyrB [Edwardsiella tarda]
          Length = 419

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 263/422 (62%), Positives = 332/422 (78%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R+G+++E  + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLGLVIRRDGHVHEQIYHHGVPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL + G     TGT V F PS   FS   +F YD L  RLRELSFLNS V I L DKR+
Sbjct: 61  APLKMVGDTE-QTGTRVRFWPSMQTFSNVVEFQYDILAKRLRELSFLNSGVSIRLRDKRN 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
              RE    Y+GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ C
Sbjct: 120 D--REDHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTMKDDIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + SY+E    +KK+K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNSYMESEGYTKKNKISATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P +AKI+V K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVESLMNERLAEYLLENPNDAKIVVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|28569045|gb|AAO47226.1|AF205853_2 DNA gyrase subunit B [Streptomyces rishiriensis]
          Length = 702

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 221/699 (31%), Positives = 331/699 (47%), Gaps = 82/699 (11%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y A  + +L GL+AV+KRP MYIG      GL H ++E++DN++DE+L G  D I V 
Sbjct: 17  SDYTARHLMVLDGLEAVRKRPGMYIGS-SDSRGLMHCLWEIIDNSVDEALAGACDHIEVI 75

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA----------------GGKFNQ 111
           L+ DGS  V+DNGRGIP D     G+S  E+  T+LHA                      
Sbjct: 76  LHDDGSVEVTDNGRGIPVDTEPRTGLSGVELAYTKLHAGGKFGGGSYGSGGLHG------ 129

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP----- 158
                      VG SVVNALS+ L + + R G  + +SF  G          D P     
Sbjct: 130 -----------VGASVVNALSARLDIEVDRHGRTHAISFRRGAPGTYSAPGPDAPFTRAQ 178

Query: 159 -LVVTGS-AGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
            L  T     + TGT V +     IF      + + L  R R+ +FL   + I + D+  
Sbjct: 179 GLHRTARIPKSRTGTRVRYWADRQIFLKDAKLSLENLHQRARQTAFLVPGLTIVVRDEYG 238

Query: 215 ---SPEPREITMFYKGGIEAFVSYLDRHKKPL----------MQSPIRIQGSRDNIS--- 258
                   E +  + GGI  F  YL   K              +  + +      ++   
Sbjct: 239 LGEGGSKGEESFRFDGGISEFCEYLAADKPVCDVLRLTGQGTFKETVPVLDEHGQMTPTE 298

Query: 259 ------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
                 +D+A+RW  GY   +  F N I    GGTH++G   A+ + +   +      + 
Sbjct: 299 VTRELGVDVALRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRAKKLLRV 358

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            +  ++ DD  EG T+V+++++ +P+F  QTKE L +S  R +V + ++  L A+L    
Sbjct: 359 AEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNTVISRELKAFLTSTK 418

Query: 373 L----EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
                +A+++++K + A+  R AAR+ +D  RRK  L+ +SLP KLADC   D ++SELF
Sbjct: 419 RDAAAQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELF 478

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSA G+AK  R+ E QA+LP+RGKILNV+++    ML + E G +I  +G G G+ 
Sbjct: 479 IVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT 538

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI---- 544
            FDI+  RY KII+MTDADVDG+HIRTLLLT F R M  ++ +G ++   PPL+ I    
Sbjct: 539 -FDIDAARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVESGRVFAAVPPLHRIELVQ 597

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
            +    +YV      E          +   + DS          +    A          
Sbjct: 598 PKKGQDRYVYTYSDRELRDRLMEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRT 657

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
               + + +E A         +D        S  A  L+
Sbjct: 658 LRRINLSDLEAAEQVFDLLMGNDVAPRKEFISSSAATLD 696



 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 6/96 (6%)

Query: 711 GDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
              +       L D +     KG+    S+QRYKGLGEM+A QL ETT++P  R+L R+ 
Sbjct: 603 DRYVYTYSDRELRDRLMEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRIN 662

Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           ++D   A+ +F  LMG++V PR+EFI  ++  + LD
Sbjct: 663 LSDLEAAEQVFDLLMGNDVAPRKEFISSSA--ATLD 696


>gi|310781035|gb|ADP23993.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781039|gb|ADP23995.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781041|gb|ADP23996.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 204/400 (51%), Positives = 276/400 (69%), Gaps = 3/400 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK 
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKS 397


>gi|119369932|gb|ABL67980.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 243/421 (57%), Positives = 310/421 (73%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GRGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V   
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPS 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +  + +  + P + K    K+L     R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEVWAHFWMKSPRKPKRFAPKLLRRPQAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAK+GR R+ QAILPL+GK
Sbjct: 300 DLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKRGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|148971329|gb|ABR20202.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 253/421 (60%), Positives = 315/421 (74%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS+WLKL I R+G  + M F  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ FLPS   F   +F+YD L  RLRELSFLN+ V I L D R  
Sbjct: 61  APLAVVGDSP-KRGTEIHFLPSPLTFGTIEFHYDILARRLRELSFLNNGVSIFLKDLRHG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG+  FV YL+R +  L  +     G ++ I++++AM+WN+ Y ENVLCF
Sbjct: 120 QE--ENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGITVEVAMQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNN PQ+DGGTHL+ LR+A+TR +  ++E++  ++K K    GDD REG T VLS+K+PD
Sbjct: 178 TNNTPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR  VE  V+D + ++L E P EA+IIV K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD   LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 ELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++SSQEI TLITALGTGIG+D +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148971387|gb|ABR20231.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 252/421 (59%), Positives = 314/421 (74%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS+ LKL I R+G  + M F  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTRLKLTIYRDGKRHFMEFREGDAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ FLPS   F   +F+YD    RLRELSFLN+ V I L D R  
Sbjct: 61  APLAVVGDSP-KRGTEIHFLPSPLTFGTIEFHYDIQARRLRELSFLNNGVSIFLKDLRHG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG+  FV YL+R +  L  +     G ++ I++++AM+WN+ Y ENVLCF
Sbjct: 120 QE--ENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGITVEVAMQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+A+TR +  ++E++  ++K K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR  VE  V+D + ++L E P EA+IIV K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD   LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 ELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++SSQEI TLITALGTGIG+D +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|229100795|ref|ZP_04231614.1| DNA gyrase subunit B [Bacillus cereus Rock3-28]
 gi|228682624|gb|EEL36682.1| DNA gyrase subunit B [Bacillus cereus Rock3-28]
          Length = 550

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 241/500 (48%), Positives = 341/500 (68%), Gaps = 5/500 (1%)

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151
           G  A EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ + R+G I+   + 
Sbjct: 2   GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYE 61

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISL 210
            GI    L V G   + TGT   F P  +IF     + +DTL  R+REL+FLN ++++++
Sbjct: 62  RGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAFLNRNIKLTI 120

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            DKR  + ++    Y+GGI+++V +L+R K+P+ + P+ ++GS+D I +++A+++N+GY 
Sbjct: 121 EDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVALQYNEGYT 179

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
            ++  FTNNI   +GGTH  G ++ALTR I  Y  K+   K    ++ G+D REG T+++
Sbjct: 180 NHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIV 239

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SIK P+P+F  QTK KL +SE R++ ES  ++    +L E+P  A+ +V K   A+  R 
Sbjct: 240 SIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARV 299

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAI
Sbjct: 300 AAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAI 359

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT IG D FDI K RYHK+IIMTDADVDG
Sbjct: 360 LPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMTDADVDG 418

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLTFF+R M  +I  G++YI +PPL+ + +GK +QY  +++ LE  L       
Sbjct: 419 AHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQP 478

Query: 571 EI-ELFCDSKGVISKNDLRN 589
           +         G ++   L  
Sbjct: 479 KPGIQRYKGLGEMNPTQLWE 498



 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%)

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428
           E    A  + +       ++      R+  ++K       +   +      + P   E  
Sbjct: 98  EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 157

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            VEG S  G   +   + N+                     ++            G    
Sbjct: 158 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 204

Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540
              +      K  I+ DAD +  G  +R  L      + P+    G           +  
Sbjct: 205 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 264

Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592
              +      +++ +  ++   +++        +  +++       K  +  + L   + 
Sbjct: 265 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 324

Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
           D    D  I + Y     +    A      + ++   +   + +    RL+ I    E  
Sbjct: 325 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 384

Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
              +        + DI   R  +        V    +      F +    + I    I  
Sbjct: 385 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 443

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757
                L  +  G KI+       L+ I +    +    +QRYKGLGEMN +QLWETT++P
Sbjct: 444 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 503

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           + RSLL+V + DA +AD+ F  LMGD+VEPRR FIQEN+     LDI
Sbjct: 504 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 550


>gi|56409818|emb|CAH65718.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 257/423 (60%), Positives = 329/423 (77%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR+G I++  + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G    +TGT + F PS + F+  +F+Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGKTE-ETGTRIRFWPSEETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     ++GGI AFV +L+R+K P+ Q           D I++++AM+WNDG+ E V 
Sbjct: 119 EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTREEDGITVEVAMQWNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCXKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD+TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 ARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVDG+HIR
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVDGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|310781037|gb|ADP23994.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 204/399 (51%), Positives = 276/399 (69%), Gaps = 3/399 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 396


>gi|148971425|gb|ABR20250.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 261/421 (61%), Positives = 322/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L IKREG ++E  + NG   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEHLHLLIKREGKLHEQEYRNGDAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V   A   TGTE+ F PS+ +F+   FNYD L  RLRELSFLNS V+I L D+R  
Sbjct: 61  YPLQVVADA-QGTGTEIRFKPSAKVFTHIQFNYDILARRLRELSFLNSGVRILLHDQRDD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI+AFV +L+R+K  L ++        +  ++++A++WND Y E V CF
Sbjct: 120 K--HDVFQYQGGIKAFVEHLNRNKTALHETVFHSIAEHERTTVEIALQWNDSYQETVYCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR I +Y+E     KK+K  + GDD REG T ++S+K+PD
Sbjct: 178 TNNIPQRDGGTHLAGFRAALTRTINNYIETEGLLKKEKIPMTGDDAREGLTGIVSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VVES +      +L E P+E+KIIV KV++A+  R+AAR+ R
Sbjct: 238 PKFSSQTKDKLVSSEVKGVVESLMAGKFEEFLLEKPVESKIIVGKVIEAARAREAARKDR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+A LPGKLADC ERDP  SELFLVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 EMTRRKGALDVAGLPGKLADCQERDPALSELFLVEGDSAGGSAKQGRDRKCQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG++ F+I+KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSVEVGTLITALGCGIGKEEFNIDKLRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|310781031|gb|ADP23991.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781045|gb|ADP23998.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781047|gb|ADP23999.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781049|gb|ADP24000.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781055|gb|ADP24003.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781057|gb|ADP24004.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781059|gb|ADP24005.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781061|gb|ADP24006.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781063|gb|ADP24007.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781065|gb|ADP24008.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781069|gb|ADP24010.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781071|gb|ADP24011.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781073|gb|ADP24012.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781075|gb|ADP24013.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 203/398 (51%), Positives = 275/398 (69%), Gaps = 3/398 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 395


>gi|113868628|ref|YP_727117.1| DNA topoisomerase IV subunit B [Ralstonia eutropha H16]
 gi|113527404|emb|CAJ93749.1| Topoisomerase IV subunit B [Ralstonia eutropha H16]
          Length = 663

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 209/619 (33%), Positives = 300/619 (48%), Gaps = 40/619 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L G+
Sbjct: 1   MASKT--SQYSESSIRVLKGLEPVKQRPGMY---TRTDNPL-HIVQEVIDNASDEALGGH 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVS 117
              I VTL+ DGS +V D+GRGIP  +H EEG+   E++ TRLHA     K    +Y  S
Sbjct: 55  GSEILVTLHRDGSLSVEDDGRGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGKGGAYAFS 114

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTF 175
           GGLHGVGVSV NALS+ L + + R+     ++F  G +  PL           +GT V  
Sbjct: 115 GGLHGVGVSVTNALSTQLDVTVWRDSMCSTLTFSGGDVTVPLASRKIERGEKKSGTRVQV 174

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF----------- 224
            P +  F         LQ  LR  + L   V+++L+ +++ E +                
Sbjct: 175 WPDARYFDSAAIPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEAL 234

Query: 225 -YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
               G E  +   +        +    +G  D       + W +        + N IP  
Sbjct: 235 AQGSGAELVIPMFEGEHFADPDANPGDEGFADGEGASWVVAWTEDGAPVRESYVNLIPTP 294

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L + + S++E     +     ++ +D     + VLS K+ DP+F  Q 
Sbjct: 295 AGGTHESGLREGLFQAVKSFIEMHA-LQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQI 353

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V +F    L  WL  H    K + + V+  +  R    RA     +K 
Sbjct: 354 KERLNSRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQAR---TRAAQKVEKKK 410

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC   D  ++ELFLVEGDSAGGSAK GR +E QAILPLRGK+LN    
Sbjct: 411 GSGVAVLPGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWET 470

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ E+  +  A+G      + + +   LRY KI I++DADVDGAHI+ LLLT F
Sbjct: 471 ERDRLFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLF 530

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----E 570
           FR  P LI  G +++ +PPL+ +       +     Y  DE  L                
Sbjct: 531 FRHFPKLIETGNVFVARPPLFRVDAPARGKKPAQKLYALDEGELLAIQDKLLKDGVKENS 590

Query: 571 EIELFCDSKGVISKNDLRN 589
                    G +S   L  
Sbjct: 591 WQISRFKGLGEMSAEQLWE 609



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQADDLFSR 779
           D +   G K     + R+KGLGEM+A QLWETT+NPDTR LL V +   D  Q  ++ + 
Sbjct: 579 DKLLKDGVKENSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSLGEYDLPQTVEMMNM 638

Query: 780 LMGD-EVEPRREFIQENSLPSALDI 803
           LMG  E   RR +++E       DI
Sbjct: 639 LMGKGEAAQRRSWLEEKGNEVEADI 663


>gi|148470262|gb|ABQ66078.1| gyrase b [uncultured bacterium]
          Length = 419

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 322/421 (76%), Gaps = 2/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS  L L I R+G  +EM F  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSDNLHLTIWRDGKQHEMDFKVGEPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL VTG A N TGT+V F+ SS IF   +++Y+ L  R+RELSFLN+ V+ISL D+R  
Sbjct: 61  APLKVTGEANNRTGTKVRFMASSAIFGSIEYHYEILAKRIRELSFLNNGVKISLCDERDG 120

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG+  FV+Y++R+K  L Q P    G ++ + +++AM+WND Y ENV CF
Sbjct: 121 KE--EDFAFSGGVAGFVAYINRNKSVLHQVPFHCVGEKEGMGVEVAMQWNDSYQENVQCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGG+HLS LR+ +TR + +Y+E++  +KK K    GDD REG   VLS+K+PD
Sbjct: 179 TNNIPQRDGGSHLSALRTVMTRTLNNYIEETELAKKAKVVTSGDDMREGLACVLSVKLPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSE+  V++  V + L  +L E+P +AKII  K+++A+  R+AAR+AR
Sbjct: 239 PKFSSQTKDKLVSSEISPVLQDIVGEALKTYLLENPNDAKIICGKIIEAARAREAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKGVLD   LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 299 ELTRRKGVLDGLGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSSQE+ TLITA+GTGIG+D +D NKLRYH+IIIMTDADVDG+HIRTL
Sbjct: 359 ILNVERARFDKMLSSQEVATLITAMGTGIGKDEYDPNKLRYHRIIIMTDADVDGSHIRTL 418

Query: 517 L 517
           L
Sbjct: 419 L 419


>gi|148971351|gb|ABR20213.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 253/421 (60%), Positives = 316/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS+WLKL I R+G  + M F  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ FLPS   F   +F+YD L  RLRELSFLN+ V I L D R  
Sbjct: 61  APLAVVGDSP-KRGTEIHFLPSPLTFGTIEFHYDILARRLRELSFLNNGVSILLKDLRLG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG+  FV YL+R +  L  +     G ++ I++++AM+WN+ Y ENVLCF
Sbjct: 120 QE--ENFSFNGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGITVEVAMQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+A+TR +  ++E++  ++K K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR  VE  V+D + ++L E P EA+I+V K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIVVGKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD   LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 ELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++SSQEI TLITALGTGIG+D +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|310781051|gb|ADP24001.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781053|gb|ADP24002.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 203/399 (50%), Positives = 276/399 (69%), Gaps = 3/399 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           +HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   MHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|88824761|gb|ABD52426.1| gyrase B [Salmonella enterica]
          Length = 419

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 258/419 (61%), Positives = 326/419 (77%), Gaps = 4/419 (0%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
            T LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL
Sbjct: 4   WTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPL 63

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
            VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  + 
Sbjct: 64  AVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE 122

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTN
Sbjct: 123 --DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+
Sbjct: 181 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++
Sbjct: 241 FSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKIL
Sbjct: 301 TRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKIL 360

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           NVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLL
Sbjct: 361 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 419


>gi|209863983|gb|ACI88909.1| GyrB [Acidithiobacillus caldus]
          Length = 420

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 250/421 (59%), Positives = 325/421 (77%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVGVSVVNALSS L+L IKR+G  +E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDESSYKVSGGLHGVGVSVVNALSSRLELSIKRDGQRWEQEYRRGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGT + F P  ++F    F +  LQ R REL++LN +++I+L D+R  
Sbjct: 61  APIAAVGPA-RGTGTTIRFWPDPEVFESVVFAFRKLQSRFRELAYLNDNLRITLRDERPG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           + RE T  Y+GG+ AFV  L++ + P+  + + I+G ++ I +D A++WNDGY E+V  F
Sbjct: 120 KTREETYHYEGGVAAFVRDLNQGRTPIHPTILTIKGEQEGIVVDAAVQWNDGYSESVYPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R+A+TR + +Y+E+     K K +V   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRAAMTRALGAYIERETADSKSKVAVEAADMREGLTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR VVE+ V+D L+++L+EHP+EA+ IV K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPVVEALVSDQLTSFLDEHPVEARAIVGKIVEAARAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRK  LD+A+LPGKLADC ERDP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 EITRRKSALDVANLPGKLADCQERDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILN ERARFD++LSS E+GTLITALGTGIG D F + KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNAERARFDRILSSDEVGTLITALGTGIGADEFRLEKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|148971445|gb|ABR20260.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 262/421 (62%), Positives = 321/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+Q SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   +  G   
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDSLELTIRRDGKIHYQMYRLGNPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   ++TGT+V F PS  IF+   F+YD L  RLRELSFLNS V+I L D R  
Sbjct: 61  EPLTVIG-TTDETGTDVHFTPSPKIFTNTVFHYDLLARRLRELSFLNSGVRIVLRDDRDL 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI AFV +L+R+K PL +  I I   ++ +S++LAM+WND Y EN  C+
Sbjct: 120 KE--DVFEYQGGIAAFVRHLNRNKTPLHEKXIYISAEKEGVSVELAMQWNDSYQENTFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+GLR+A+TR +  ++E    +KKDK S  GDD REG T+VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLAGLRAAMTRTLNQHIENLALAKKDKISPTGDDAREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES VN+ L  +L+E+P +A++I  K++DA+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVKGIVESIVNERLLDFLQENPSDARVIASKIIDAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC ERDP   EL+LVEG   G    Q R R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQERDPSLCELYLVEGRLCGRLCSQARDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS E+GTLITALGTGIG+D FDI KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSAEVGTLITALGTGIGKDDFDIKKLRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|47155276|emb|CAG28942.1| gyraseB [Shewanella sp. wp2]
          Length = 419

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 257/422 (60%), Positives = 327/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  +  G  D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRNGKLYEQFYSMGEPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G +   TGTE+ F PS + FS   F++D L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDST-STGTELRFWPSHETFSDTLFHFDILVKRVRELSFLNSGVGIRLVDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           + R+    Y+GGI AFV YL+ +K P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 118 DNRDEFFQYQGGISAFVDYLNVNKTPVNKDVFHFIQEREDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+E+   +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLTAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  + + L  +L EHP EAK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D +K RYH I+IMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|310781225|gb|ADP24088.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781229|gb|ADP24090.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781231|gb|ADP24091.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781233|gb|ADP24092.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 202/400 (50%), Positives = 276/400 (69%), Gaps = 3/400 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L   PI ++       +++ M++N+ Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNNSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK 
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKS 397


>gi|2267066|gb|AAB63498.1| gyrase B subunit [Pseudoalteromonas espejiana]
          Length = 423

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 260/425 (61%), Positives = 334/425 (78%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+REG ++E ++  G+ +
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPN 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL + G A + TGTE+ F PS + F+  DF+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAIIGDA-DTTGTELRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVL 274
           E +     Y+GGI+AFV YL+R+K P+ +        R+   IS++++M+WNDG+ EN+ 
Sbjct: 119 ENKSDHFKYEGGIQAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDGFQENIY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSI 332
           CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VE  + +  S +L E+P++AKI+V K++DA+  R+AA
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAARAREAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG +D+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D  K+RYH IIIMTDA++DG+H
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKIRYHSIIIMTDAELDGSH 418

Query: 513 IRTLL 517
           IRTLL
Sbjct: 419 IRTLL 423


>gi|215254254|gb|ACJ64126.1| DNA gyrase subunit B [Vibrio sp. cn83]
          Length = 419

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 262/421 (62%), Positives = 331/421 (78%), Gaps = 3/421 (0%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G ++  ++ +G  + 
Sbjct: 1   VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQVHTQTYHHGEPEA 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           PL V G   + TGTE+ F PS D FS  +F+YD L  RLRELSFLNS V I LIDKR  E
Sbjct: 61  PLTVIGDT-DKTGTEIRFWPSEDTFSNVEFHYDILAKRLRELSFLNSGVSIKLIDKR-EE 118

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCF 276
            +     ++GGI+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CF
Sbjct: 119 DKMDHFMFEGGIQAFVEHLNTNKTPIIQKIFHFDNERDDGITVEVAMQWNDGYQENIYCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+++ +K+PD
Sbjct: 179 TNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVPVKVPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR
Sbjct: 239 PKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPGEAKIVCTKIIDAARARDAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 299 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTL
Sbjct: 359 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTL 418

Query: 517 L 517
           L
Sbjct: 419 L 419


>gi|148971389|gb|ABR20232.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 252/421 (59%), Positives = 314/421 (74%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+S GLHGVGVSVVNALS+WLKL I R+G  + M F  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISVGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ FLPS   F   +F+YD L  RLRELSFLN+ V I L D R  
Sbjct: 61  APLAVVGDSP-KRGTEIHFLPSPLTFGTIEFHYDILARRLRELSFLNNGVSIFLKDLRHG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG+  FV YL+R +  L  +     G ++ I++++AM+WN+ Y ENVLCF
Sbjct: 120 QE--ENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGITVEVAMQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGT L+ LR+A+TR +  ++E++  ++K K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTLLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR  VE  V+D + ++L E P EA+IIV K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD   LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 ELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++SSQEI TLITALGTGIG+D +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|119369958|gb|ABL67993.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 254/421 (60%), Positives = 317/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGG+F+  SYK+SGGLHGVGVSVVNALS+WLK+ I R+G  + M F  G   
Sbjct: 1   EVIMTVLHAGGEFDSNSYKISGGLHGVGVSVVNALSTWLKMTIYRDGKRHFMEFREGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ FLPS + F V +F+YD L  RLRELSFLN+ V I L D R  
Sbjct: 61  APLAVVGDS-QKNGTEIHFLPSPETFGVIEFHYDILARRLRELSFLNNGVSILLKDLRHG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
              E    + GG+  FV YL+R +  L  +     G ++ I++++AM+WN+ Y ENVLCF
Sbjct: 120 --HEENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGIAVEVAMQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+A+TR +   +E++  ++K K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTALRAAMTRTLNQSIEENELARKAKVETTGDDMREGLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR  VE  V++ +  +L E P+EA+IIV K++DA+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPAVEEVVSEQMRNFLLEKPVEARIIVGKIIDAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD   LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 ELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++SSQEI TLITALGTGIG+D +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148470284|gb|ABQ66089.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 243/421 (57%), Positives = 314/421 (74%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS  LKL I+  G +YE  + +G   
Sbjct: 1   EVIMTVLHAGGKFDHDSYKISGGLHGVGVSVVNALSEDLKLTIRMNGKVYEQRYRDGDPM 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   GS+  + GTE+ F PS  IF    F YDT+  RLREL++LN+S+ I L D+R+ 
Sbjct: 61  APLAPVGSSS-EHGTEIRFKPSRQIFKNIQFQYDTIAKRLRELAYLNASIHIYLHDERTD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +    T  + GG++ FV  L+R+K P+          +D   +++AM+WND Y E + CF
Sbjct: 120 KK--ETFEFHGGLKEFVQDLNRNKTPIHSKIFYFSTEKDQTIVEVAMQWNDTYQEKLFCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGG+H+ G RSALTR + +Y+EK   +K++K +  GDD REG  ++LS+KMP+
Sbjct: 178 TNNIPQKDGGSHVVGFRSALTRVLNNYIEKEGYAKREKIATTGDDFREGLIAILSVKMPN 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV++VVES + +  +A+L E P +AK IV KV++ +  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKAVVESVMGEKFNAFLLECPQDAKSIVAKVMETARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRK   D+A LPGKLADC E DP  SELF+VEGDSAGGSAKQ R+R+ QA+LPL+GK
Sbjct: 298 ELTRRKSAFDVAGLPGKLADCQEEDPSLSELFIVEGDSAGGSAKQARNRKTQAVLPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARF KMLSSQE+ TLITALG GIG++ +  +KLRYH +IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFGKMLSSQEVVTLITALGCGIGREEYSPDKLRYHHVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|310781237|gb|ADP24094.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 201/398 (50%), Positives = 275/398 (69%), Gaps = 3/398 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L   PI ++       +++ M++N+ Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNNSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGGSA
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 395


>gi|148470200|gb|ABQ66048.1| gyrase b [uncultured bacterium]
 gi|148971363|gb|ABR20219.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 258/421 (61%), Positives = 316/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R G+I++  + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G     TGT V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R  
Sbjct: 61  YPLTVVGDTE-TTGTTVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERI- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
              E    Y+GG+  FV Y+++ K  L         + + I +++A++WND Y ENV CF
Sbjct: 119 -HAEHVFDYEGGLSEFVKYINQGKTHLNDIFHFTVQAENGIGVEVALQWNDTYQENVRCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R+ALTR + SY+E     KK K +V GDD REG T+++S+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRAALTRGLNSYMENENLLKKGKVAVSGDDAREGLTAIVSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVKPAVEQAMNKSFSEYLLENPQAAKSIAGKIIDAARARDAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRK  LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GK
Sbjct: 298 EMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKM+SSQE+GTLITALG GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148971339|gb|ABR20207.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 253/421 (60%), Positives = 315/421 (74%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS+WLKL I R+G  + M F  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ FLPS   F   +F+YD L  RLRELSFLN+ V I L D R  
Sbjct: 61  APLAVVGDSP-KRGTEIHFLPSPLTFGTIEFHYDILARRLRELSFLNNGVSILLKDLRHG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG+  FV YL+R +  L  +     G ++ I++++AM+WN+ Y ENVLCF
Sbjct: 120 QE--ENFSFNGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGITVEVAMQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+A+TR +  ++E++  ++K K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR  VE  V+D + ++L E P EA+IIV K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD   LPGKLADC E+DP + E++LVEGDSA GSAKQGR R  QAILPL+GK
Sbjct: 298 ELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAWGSAKQGRDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++SSQEI TLITALGTGIG+D +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|86604463|emb|CAJ76129.1| DNA gyrase B subunit [Shewanella psychrophila]
          Length = 418

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 326/421 (77%), Gaps = 4/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  +  G  D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRNGKLYEQFYSMGEPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G +   TGTE+ F PS + FS   F++D L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDST-STGTELRFWPSHETFSDTLFHFDILVKRVRELSFLNSGVGIRLVDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           + R+    Y+GGI AFV YL+ +K P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 118 DNRDEFFQYQGGISAFVDYLNVNKTPVNKDVFHFIQEREDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+E+   +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLTAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  + + L  +L EHP EAK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D +K RYH I+IMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRT 417

Query: 516 L 516
           L
Sbjct: 418 L 418


>gi|148470282|gb|ABQ66088.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 258/421 (61%), Positives = 318/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALSSWLKL I R G  Y M F +G   
Sbjct: 1   EVIMTVLHAGGKFDGNSYKISGGLHGVGVSVVNALSSWLKLTIHRGGKRYFMEFRHGDPT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL + G++    GTEV FL S++ F   +F+YD L  RLRELSFLN  V I L D R+ 
Sbjct: 61  APLAMVGNSE-RRGTEVHFLASAETFDTVEFHYDILAKRLRELSFLNHGVSIFLKDMRTD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             ++ T  + GG+  FV YL+R +  +  S     G RD +++++A++WN+ Y ENVLCF
Sbjct: 120 --QQETFSFSGGVRGFVEYLNRTRSVIHPSIFHASGERDGMTVEVAIQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+ALTR +  ++  +  +KK K    GDD REG TSVLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTALRAALTRTMNQFMVDNEIAKKSKIETSGDDMREGLTSVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR VVE  V+D L  +L E+P E K+I+ K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPVVEDVVSDRLKDFLLENPQETKVIIGKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGV D   LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 EMTRRKGVFDGLGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK+LSSQEI TLITALGTGIG + +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLLSSQEIVTLITALGTGIGAEEYMPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|310780909|gb|ADP23930.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780911|gb|ADP23931.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780913|gb|ADP23932.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780915|gb|ADP23933.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780917|gb|ADP23934.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780919|gb|ADP23935.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780921|gb|ADP23936.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780923|gb|ADP23937.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780925|gb|ADP23938.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780949|gb|ADP23950.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780951|gb|ADP23951.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780953|gb|ADP23952.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780955|gb|ADP23953.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780957|gb|ADP23954.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780959|gb|ADP23955.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780961|gb|ADP23956.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780963|gb|ADP23957.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780965|gb|ADP23958.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781001|gb|ADP23976.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781003|gb|ADP23977.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 201/396 (50%), Positives = 273/396 (68%), Gaps = 3/396 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAG
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAG 393


>gi|148971385|gb|ABR20230.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 245/421 (58%), Positives = 317/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS  L L I+  G IYE  + +G   
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSEELHLVIRMNGKIYEQYYHHGEPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +  + GTEV F PS++ F    F+YD L  RLREL+FLNSS++I L D+R+ 
Sbjct: 61  APLATIGESS-EHGTEVRFKPSAETFKNIQFHYDVLAKRLRELAFLNSSIRIYLTDERTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y GG++ FV  L+R+K P+          +D +++++AM+WND Y E + C+
Sbjct: 120 KN--EIFEYHGGLKGFVEDLNRNKTPIHSKIFYFNAEKDKVTVEVAMQWNDTYQEKLFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTH++G RS LTR + +Y+EK   +K++K +  GDD REG T+VLS+KMP+
Sbjct: 178 TNNIPQRDGGTHVAGFRSGLTRVVNNYIEKEGYAKREKVATSGDDLREGLTAVLSVKMPN 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FS+QTK+KLVSSE++S+VES +N+    +L E+P +AK IV KV++A+  R+AAR+AR
Sbjct: 238 PKFSAQTKDKLVSSEIKSIVESLMNEKFQEFLMENPQDAKGIVSKVIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRK  LD+A LPGKLADC E DP KSELF+VEGDSAGGSAKQ R R+ QA+LPL+GK
Sbjct: 298 ELTRRKSALDVAGLPGKLADCQEEDPTKSELFIVEGDSAGGSAKQARDRKTQAVLPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+ TLITALG GIG++ +  +KLRYH IIIM DADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVATLITALGCGIGREEYSPDKLRYHSIIIMIDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|13516991|dbj|BAB40378.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC05204]
          Length = 474

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 218/475 (45%), Positives = 306/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+ V G + + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVYREGKIWEQEYERGKTMYPVKVVGES-DKT 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISL----IDKRSPEPREITMF 224
           GT VTF P   IF    ++NYDTL  R+REL++LN  + + L      K        T  
Sbjct: 60  GTIVTFKPDPQIFQQTLEYNYDTLASRMRELAYLNRGITVHLVDRRNKKEDGSFEGETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G+  FV +LD +++PLM   I  +G ++ + +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLSEFVKFLDGNREPLMNDVISFEGEKNGVPVEVAMVYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADSSGMLDKLKFDISGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVSASVSQAVSEMLTDYLEEHPEDAKTIVQKVILAAQARHAAQKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP+K EL+LVEGDSAGG+AK GR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPEKCELYLVEGDSAGGTAKAGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +      +++KLRYHKI+IM DAD+DG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIFTALGVTIGTEEDPRALNLSKLRYHKIVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  L+ NG +YI  PPLY + +G   QY   ++  +  +     + +I+ +
Sbjct: 420 FFRYMRELVENGHVYIATPPLYLVKKGAKKQYAWSDKERDAIISEFGENSKIQRY 474


>gi|310781029|gb|ADP23990.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 201/396 (50%), Positives = 273/396 (68%), Gaps = 3/396 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L V
Sbjct: 61  MLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLEV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +    
Sbjct: 121 IGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--E 177

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI 
Sbjct: 178 VFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNID 237

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
            ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  
Sbjct: 238 TREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEG 297

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRR
Sbjct: 298 QTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRR 357

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           K  L+  +LPGKLADCSE+DP K ELFLVEGDSAGG
Sbjct: 358 KSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGG 393


>gi|222103611|gb|ACM44314.1| GyrB [Shewanella decolorationis]
          Length = 419

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 255/422 (60%), Positives = 331/422 (78%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+ V G A   TGTE+ F PS + FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  EPIKVIGDAT-KTGTEIRFWPSEETFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY E++ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKGVFHFMQERDDGITVEVAMQWNDGYQESIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+  ++ +K RYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRGEYNPDKTRYHNIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|148971295|gb|ABR20185.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 252/421 (59%), Positives = 322/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS   +L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDQPQLTIHRDGKVHRQEYHLGTPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GT + F PS++IF+   FNY+ L  RLRELSFLNS V+I L+D+R  
Sbjct: 61  APLAVVGPSE-QRGTTIRFKPSAEIFTHIQFNYEILAKRLRELSFLNSGVRIELVDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E R     ++GG++A V YL+R + P+  + +  +     ++I++A++WND Y E++ C+
Sbjct: 118 ENRSDVFQHEGGLQASVKYLNRSRTPVHDTVLWFKSQDGPVTIEVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK +  GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKESSAKKDKLTTTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KL SSEV+ +VE+ V   L  +L EHP +AK I+ K+L+A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLGSSEVKGIVEAAVGTKLQDFLLEHPQDAKAIIAKMLEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE++RFDKML+S E+GTLITALG GIG+D FDI KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKSRFDKMLASAEVGTLITALGCGIGKDDFDIAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|222103615|gb|ACM44316.1| GyrB [Shewanella sp. JCM 14937M]
          Length = 419

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 254/422 (60%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R G IYE  + +G+ +
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRAGKIYEQFYTHGVPN 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS+  FS  +F++D L  R+RELSFLNS V I L+D+R  
Sbjct: 61  EPIKEIGDA-VKTGTEIRFWPSAQTFSDVEFHFDILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KD--EFFKYEGGISAFVHYLNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+E+   +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRNLNTYMEREGYNKKGKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+A FDKMLSSQE+ TLITALG GIG+D ++ +K RYH I+IMTDADVDG+HIRT
Sbjct: 358 KILNVEKAHFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|310781249|gb|ADP24100.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781253|gb|ADP24102.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781255|gb|ADP24103.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781257|gb|ADP24104.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 199/396 (50%), Positives = 273/396 (68%), Gaps = 3/396 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++N+ Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNNSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V + L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           RK  L+  +LPGKLADCSE+DP K ELFLVEGDSAG
Sbjct: 358 RKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAG 393


>gi|9971371|dbj|BAB12492.1| DNA gyrase B subunit [Flectobacillus major]
          Length = 477

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 232/471 (49%), Positives = 317/471 (67%), Gaps = 9/471 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ LK+ + REG I++  +  G+   P+   G   + T
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTDLKVTVHREGKIFQQEYKIGVPQYPVKEIGVT-DRT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFY 225
           GT V F P   IFSV ++ Y+T+  RLRELSFLN+ ++I L D R  +          F 
Sbjct: 60  GTTVHFKPDDTIFSVTEYKYETVAGRLRELSFLNAGIKIFLKDLRDLDENGAPKSDDFFS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV+YLD  ++ L+  PI ++G ++ + + +AM +N  Y ENV+ + NNI   +G
Sbjct: 120 EGGLREFVTYLDSTREKLIPEPIYMEGDKNGVPVQVAMMYNTSYSENVVSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R ALTR + +Y +KS    K K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHVAGFRGALTRTLKNYADKSGALDKLKIDIAGDDFREGLTAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + EV   V + ++D L  WLEEHP EA+ IV KV+ A+  R AAR+AR++ +RK VL
Sbjct: 240 KLGNGEVSGAVSAAMSDMLETWLEEHPKEARQIVAKVILAAQARHAARKAREMVQRKTVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
              SLPGKLADCS+ DP   EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A+ 
Sbjct: 300 GGNSLPGKLADCSDSDPVGCELYLVEGDSAGGTAKQGRNRAYQAILPLRGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  +ITALG   G+D      +I KLRYHKIIIMTDADVDG+HIRTL+LTFF
Sbjct: 360 YKIYENEEIKNMITALGVSFGKDGDERALNIEKLRYHKIIIMTDADVDGSHIRTLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           FR M  L+ NG++YI +PPLY + RG+  +Y   E+  +  +      +E 
Sbjct: 420 FRYMKDLVDNGYIYIAQPPLYLVKRGQQSRYCWTEQQRDVAVRELGGDKES 470


>gi|10039343|dbj|BAB13324.1| DNA gyrase B subunit [Tenacibaculum amylolyticum]
          Length = 474

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 220/460 (47%), Positives = 306/460 (66%), Gaps = 10/460 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G I++  +  G    P+  TG   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHRDGKIWQQEYERGKTLYPVKTTGET-DIT 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMF 224
           GTEVTFLP   IF    ++NYDTL  R+REL++LN  + I+L DKR+ +        T  
Sbjct: 60  GTEVTFLPDRSIFQQTVEYNYDTLATRMRELAYLNKGITITLTDKRNKDDEGNDISETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G+  FV YLD  +  ++Q  I ++G ++ I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 STEGLSEFVKYLDSTRTSVIQHVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y ++S   K  K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADESGLLKNVKFEISGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +      +++KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNMFTALGITIGTEEDPRALNLSKLRYHKVVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           FFR M  ++  G++YI  PPLY + +G+  +Y  D+   +
Sbjct: 420 FFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDNQRD 459


>gi|269219419|ref|ZP_06163273.1| putative DNA gyrase subunit B [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211115|gb|EEZ77455.1| putative DNA gyrase subunit B [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 735

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 241/684 (35%), Positives = 341/684 (49%), Gaps = 79/684 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
             N SY A  +Q+L+GL+AV+KRP MYIG TD   GL H ++E++DNA+DE+LEG+AD +
Sbjct: 13  TSNESYTARHLQVLEGLEAVRKRPGMYIGSTDS-RGLMHCLWEIIDNAVDEALEGHADAV 71

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  DGS  V DNGRG+P D     G+S  EV+ T+LHAGGKF   SY  SGGLHGVG
Sbjct: 72  EVRLYADGSVEVRDNGRGVPVDEVPGVGLSGVEVVYTKLHAGGKFGGGSYGSSGGLHGVG 131

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------------DNPLVVTG 163
            SVVNALS  + +++ R G  Y+M F  G                        + L V G
Sbjct: 132 ASVVNALSERMDVQVDRGGKTYQMQFHRGEPGRFSDGASGPDPRAPFSAFTESSVLDVVG 191

Query: 164 S-AGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK-------- 213
             A N +GT V +    +IF +   F+Y+ L  R R+ +FL   + ISL+D+        
Sbjct: 192 KVAKNKSGTRVRYWADPEIFLASAAFSYEELVERARQTAFLVPGLTISLVDEREGAAGEN 251

Query: 214 ---------------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----- 253
                              PR  T  + GG   FV +L           +  +G+     
Sbjct: 252 AAGENAEGEGDEGQAPHEGPRTETFRFDGGTVDFVDFLAPDAAVTATMRLTGEGTFAEKV 311

Query: 254 ---------------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                             +++D+A+RW   Y   V  F N I    GGTH SG    L +
Sbjct: 312 PVLDAESGHLVSREVERAVAVDVALRWGKDYETRVESFVNIIRTPGGGTHQSGFEQGLMK 371

Query: 299 QITSYVEKSFG---SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
            + S VE +            +  DD   G T+V+++++P+P+F  QTKE L +S VR +
Sbjct: 372 VVRSLVESNSRRLKMSAKDPRIEKDDVLAGLTAVVTVRLPEPQFEGQTKEILGTSAVRGI 431

Query: 356 VESFVNDGLSAWLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V   L A L     + K     +++KV+     R  AR  ++++RRK  L+ +SLP
Sbjct: 432 VSGVVERELGAILGSSKRDQKTETSRLLEKVVAEMRARVTARMHKEISRRKNALEASSLP 491

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
            KLADC   D  ++ELF+VEGDSA G+AK  RS E QA+LP+RGKILNV++A    +L +
Sbjct: 492 AKLADCRSEDVAETELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASTADILKN 551

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +E+  +I  +G G G+  FD+   RY K+I+MTDADVDGAHIRTLLLT FFR M  L+  
Sbjct: 552 KEVSEIIQVVGAGSGRT-FDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLVQE 610

Query: 532 GFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           G +Y   PPL+ I     +G    Y+      + +   + L    + + +          
Sbjct: 611 GRVYAAVPPLHRIEVSGGKGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGLGE 670

Query: 588 RNFIDDALKIDKLIKDFYPNHDKT 611
            +    A       +         
Sbjct: 671 MDAHQLAETTMDPSRRTLRRIRME 694



 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 9/103 (8%)

Query: 709 CNGDKIKITGPCS--LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSL 762
             G K  I       L   +  + R G S    +QRYKGLGEM+A QL ETT++P  R+L
Sbjct: 629 KGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGLGEMDAHQLAETTMDPSRRTL 688

Query: 763 LRVKITDA---SQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
            R+++ D     +A+ +F  LMG++V PRREFI E +     D
Sbjct: 689 RRIRMEDERALMEAETVFELLMGNDVAPRREFIVEGAAAVDRD 731


>gi|209863967|gb|ACI88901.1| GyrB [Sulfobacillus acidophilus]
          Length = 418

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 252/421 (59%), Positives = 326/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WLKL+I R+G +++M F  G+  
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLKIYRKGKVHQMEFHRGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL +TG   +  GTEV FL S + F + +++++ L  R+RELSFLN+ V+I LID+R+ 
Sbjct: 61  APLAITG-TTDKKGTEVHFLASVETFVLVEYHFEILAKRIRELSFLNNGVKIELIDQRTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GGI+ FV Y+ R K  L          +DN+++++AM+WND Y E V C 
Sbjct: 120 KS--ENFAFSGGIKGFVEYMXRTKXVLHPKVFYAISEKDNMTVEVAMQWNDSYSETVQCL 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+GLR+A+TR +  Y+E++  +KK K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTGLRTAMTRTLNQYIEQNEFAKKAKVETTGDDMREGITCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VV   V   L+ +LEE+P++AKI+  K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVQPVVSEIVAAKLAEFLEENPVDAKIVCGKIVEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGV+D   LPGKLADC E++P  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 EITRRKGVMDTMGLPGKLADCQEKNPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDK+L SQEI TLITA+GTGIG+D F++ KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKLLGSQEIATLITAMGTGIGKDDFNLEKLRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|13516993|dbj|BAB40379.1| DNA gyrase B subunit [Cytophaga sp. MBIC01355]
 gi|13516995|dbj|BAB40380.1| DNA gyrase B subunit [Cytophaga sp. MBIC01356]
          Length = 474

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 221/475 (46%), Positives = 309/475 (65%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHRDGKIWEQEYERGKTLYPVKAVGDT-DKR 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P  +IF    +++YDTL  RLREL++LN  + I LIDKR  +        T  
Sbjct: 60  GTIVTFKPDPEIFKQTLEYSYDTLASRLRELAYLNKGITIHLIDKRVKKEDGSFEGETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD +++PLMQ  I  +G ++ + +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIQFLDGNREPLMQEAISFEGEKNGVPVEVAMIYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y ++S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEEHP  AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVSASVSQAVSEMLTDYLEEHPDTAKTIVQKVILAAQARHAAQKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP + E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHKI+IM DAD+DG+HI TL+LTF
Sbjct: 360 THKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY I +G   QY  +++  +  +     S +I+ +
Sbjct: 420 FFRYMKELIEAGHVYIATPPLYLIKKGAKKQYAWNDKERDAIVKEFGESSKIQRY 474


>gi|225575717|ref|ZP_03784327.1| hypothetical protein RUMHYD_03810 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037075|gb|EEG47321.1| hypothetical protein RUMHYD_03810 [Blautia hydrogenotrophica DSM
           10507]
          Length = 384

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 174/373 (46%), Positives = 239/373 (64%), Gaps = 2/373 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
             Y AD IQIL+GL+AV+KRP MYIG T    GLHH++YE++DNA+DE+L G+ D I VT
Sbjct: 13  EEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGFCDEIQVT 71

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N   S TV DNGRGIP  ++ + GI A EV+ T LHAGGKF    YKVSGGLHGVG SV
Sbjct: 72  INSGDSITVIDNGRGIPVGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 131

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186
           VNALS WL++ I  EG +Y   +  G     L + G      TGT V+FLP   IF    
Sbjct: 132 VNALSEWLEVTIYHEGKVYRQRYERGNTVYKLKIVGECEPEKTGTMVSFLPDKKIFEETV 191

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YD L+ R RE++FL   ++I L D+R+ E    T  Y+GGI+ FV YL+R K  L   
Sbjct: 192 YDYDILKQRFREMAFLTKGLKIVLTDERTDERISHTFHYEGGIKEFVKYLNRSKTELYPE 251

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G +D + +++AM+ ND Y EN   F NNI   +GGTH+ G R+ALT+    Y  K
Sbjct: 252 VIYCEGEKDGVFVEVAMQHNDSYTENTYGFVNNITTPEGGTHVVGFRNALTKTFNDYARK 311

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K  + ++ G+D REG  +++S+K+ +P+F  QTK+KL +SE R  V++ V+  L  
Sbjct: 312 NKLLKDSEPNLSGEDIREGLAAIVSVKIEEPQFEGQTKQKLGNSEARGAVDNIVSKQLEL 371

Query: 367 WLEEHPLEAKIIV 379
           +LE++P  AK+IV
Sbjct: 372 FLEQNPSVAKVIV 384


>gi|10039351|dbj|BAB13328.1| DNA ryrase B subunit [Microscilla sericea]
          Length = 479

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 227/471 (48%), Positives = 317/471 (67%), Gaps = 10/471 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGND 168
           ++ SYKVSGGLHGVGVS VNALSS L+  +  R+G IYE  +  G    P+   G   + 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSSMLRATVYSRDGKIYEQEYSEGFPKAPVKPVGET-DI 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMF 224
           TGT++ F P   IF+   F Y+T+  RLREL++LN+ ++I L D R  +     +E   F
Sbjct: 60  TGTKIQFKPDETIFAESVFKYETVASRLRELAYLNAGIKIKLQDHREKDEEGNSKEEDFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            +GG+  FV YLD  ++ L+  PI ++G ++N+ + +A+ +N  Y ENV+ + NNI   +
Sbjct: 120 SEGGLLEFVQYLDVSREKLIPEPIYMEGEKNNVPVQVALNYNTSYSENVVSYVNNINTIE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH+SG R ALTR + SY +KS   +K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHVSGFRRALTRTLKSYADKSGLLEKQKIEITGDDFREGLTAIISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +S+V   VES V++ L  +LEE+P  AK IV+KV+ A+  R+AA++AR++ +RK V
Sbjct: 240 TKLGNSDVMGAVESCVSETLQYFLEENPKAAKTIVQKVILAAQARNAAKKAREMVQRKNV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  + LPGKLADCSE+DP   E++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A+
Sbjct: 300 MSGSGLPGKLADCSEKDPALCEIYLVEGDSAGGSAKQGRDRNFQAILPLKGKILNVEKAQ 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  + EI  ++TALG   G +  +     +KLRYHKI+IMTDADVDG+HIRTL+LT 
Sbjct: 360 EHKIYDNDEIKNILTALGVRFGTEDDEKALNLDKLRYHKIVIMTDADVDGSHIRTLILTL 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           FFR M  LI  G++YI +PPLY I RGK+ +YV  E+   + +   S    
Sbjct: 420 FFRYMRELIDMGYVYIAQPPLYLIKRGKTERYVFTEDERVEVVKEISPDGT 470


>gi|13517007|dbj|BAB40386.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04446]
 gi|13517023|dbj|BAB40394.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04456]
          Length = 474

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 221/463 (47%), Positives = 301/463 (65%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHRDGKIWEQEYERGKSLYPVKAVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTFLP   IF     ++YDTL +RLREL++LN  + I L DKR  E     +  T  
Sbjct: 60  GTVVTFLPDRSIFQQTTTYSYDTLANRLRELAYLNKGITIILTDKRETEEDGSFKGETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD  + P+++  I ++G ++ I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SQEGLKEFIRFLDDTRHPIIEDVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTGTLKKYADNSGMLDKLKFDITGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V+  L  +LEEHP +AK+IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSQMLEDYLEEHPNDAKVIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCSE DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSGGGLPGKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHKI+IM DADVDG+HI TL+LTF
Sbjct: 360 SHKVFENEEIRNIFTALGVTIGTEEDSKALNLEKLRYHKIVIMCDADVDGSHISTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  LI NG++YI  PPLY + +G   +Y  +++  ++  
Sbjct: 420 FFRYMKELIENGYVYIATPPLYLVKKGAKKRYAWNDKERDEIA 462


>gi|222103605|gb|ACM44311.1| GyrB [Shewanella profunda]
          Length = 419

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 258/422 (61%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I LID+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|19909601|dbj|BAB86996.1| DNA gyrase subunit B [Halomonas pacifica]
          Length = 378

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 213/381 (55%), Positives = 278/381 (72%), Gaps = 3/381 (0%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISA 95
           D  +GLHHM++E++DN+IDE+L G+   I V ++ D S TVSDNGRGIPTD+H+EEG+SA
Sbjct: 1   DDGTGLHHMVFELVDNSIDEALAGHCSEIRVVIHPDESITVSDNGRGIPTDIHEEEGVSA 60

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL + R G ++E  + +G+ 
Sbjct: 61  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELKLTVWRAGQVHEQIYRHGVP 120

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
           + PL V G     +GT V F PS + F+  +F+YD L  RLRELSFLNS V I LID+RS
Sbjct: 121 EAPLSVVGKTE-QSGTRVHFRPSPETFANIEFHYDILAKRLRELSFLNSGVAIRLIDERS 179

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GG++AFV++L+ +K  L           D + +++AM+WND + EN+ C
Sbjct: 180 GKE--ELFHYEGGLKAFVNHLNTNKSTLNSVFHFNVEREDGVGVEVAMQWNDTFAENIFC 237

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           +TNNIPQ+DGGTHL+G R+ALTR +  Y+E     KK K +  GDD REG T+++S+K+P
Sbjct: 238 YTNNIPQRDGGTHLAGFRAALTRTLNGYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVP 297

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTKEKLVSSEV++ VE  +    S +L EHP EAK +V K+LDA+  R+AAR+A
Sbjct: 298 DPKFSSQTKEKLVSSEVKTAVEQEMGRLFSEYLIEHPNEAKAVVNKMLDAARAREAARKA 357

Query: 396 RDLTRRKGVLDIASLPGKLAD 416
           RD+TRRKG LD ASLPGKLAD
Sbjct: 358 RDMTRRKGALDNASLPGKLAD 378


>gi|13516999|dbj|BAB40382.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04442]
 gi|13517003|dbj|BAB40384.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04444]
          Length = 474

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 221/475 (46%), Positives = 310/475 (65%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHRDGKIWEQEYERGKTLYPVKAVGDT-DKR 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P  +IF    +++YDTL  RLREL++LN  + I LIDKR+ +        T  
Sbjct: 60  GTIVTFKPDPEIFKQTLEYSYDTLASRLRELAYLNKGITIHLIDKRAKKEDGNFEGETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD +++PLMQ  I  +G ++ + +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIKFLDGNREPLMQEAISFEGEKNGVPVEVAMIYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y ++S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEEHP  AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVSASVSQAVSEMLTDYLEEHPDTAKTIVQKVILAAQARHAAQKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP + E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHKI+IM DAD+DG+HI TL+LTF
Sbjct: 360 THKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY I +G   QY  +++  +  +     S +I+ +
Sbjct: 420 FFRYMKELIEAGHVYIATPPLYLIKKGAKKQYAWNDKERDAIVKEFGESSKIQRY 474


>gi|148971331|gb|ABR20203.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 260/421 (61%), Positives = 320/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L IKREG ++E  + NG   
Sbjct: 1   EVIMTVLHAGGKFDDDSYKVSGGLHGVGVSVVNALSEHLHLLIKREGKLHEQEYRNGDAA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V   A   TGTE+ F PS+ +F+   FNYD L  RLRELSFLNS V+I L D+R  
Sbjct: 61  YPLKVVADA-QGTGTEIRFKPSAKVFTHIQFNYDILARRLRELSFLNSGVRILLHDQRDD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI+AFV +L+R+K  L ++        +  ++++A++WND Y E V CF
Sbjct: 120 K--HDVFQYQGGIKAFVEHLNRNKTALHETVFHFIAEHERTTVEIALQWNDSYQETVYCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR I +Y+E     KK+K  + GDD REG T ++S+K+PD
Sbjct: 178 TNNIPQRDGGTHLAGFRAALTRTINNYIEAEGLLKKEKIPMTGDDAREGLTGIVSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VVES +      +L E P E+KIIV KV++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGVVESLMAGKFEEFLLEKPAESKIIVGKVIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+A LPGKLADC ERDP  SELFLVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 EMTRRKGALDVAGLPGKLADCQERDPALSELFLVEGDSAGGSAKQGRDRKCQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+AR DKMLSS E+GTLITALG GIG++  +I+KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARIDKMLSSVEVGTLITALGCGIGKEELNIDKLRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|312601151|gb|ADQ90406.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 168]
          Length = 577

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 219/528 (41%), Positives = 316/528 (59%), Gaps = 11/528 (2%)

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D   ++ D+GRGIPT +H +  ISAAEV+ T LHAGGKF+ KSYKVSGGLHGVG SVVN
Sbjct: 2   DDFKISIEDDGRGIPTGIHPKYEISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGASVVN 61

Query: 130 ALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQDF 187
           ALS  L++ IKR+G ++   FIN G     L V  +   + +GT++ F P  +I     F
Sbjct: 62  ALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNIDSSQSGTKIIFSPDFEILEKNSF 121

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
              T+ +RL+  ++L   ++  LIDKRS      T  ++GGI  +V  L ++ K L  + 
Sbjct: 122 QLLTIFNRLKNTAYLTRRIEFELIDKRSD--FSQTFCFEGGISDYVDELSKNFKKLTNTI 179

Query: 248 IR----IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           I      + ++D I ++ A+ +    H  +  +TNNI   +GG+H +GL   L R + +Y
Sbjct: 180 IYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCDGLLRILNNY 239

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
              +   K +    +  D ++G  +++SIK  +P F  QTK KL + EVR  V    ++ 
Sbjct: 240 ALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQFVNKAFSEV 299

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
              +L E+P +AK I+ + L A     AA+ AR+  +RK   DI +LPGKLADC+ ++ +
Sbjct: 300 FQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKLADCATKNSE 359

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +EL++VEG+SAGGSAK GR R  QAILPLRGK++N +R + +K+L ++EI ++ITA GT
Sbjct: 360 IAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITAFGT 419

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G+G   FDI+K+RY KIIIMTDAD DG+HIR+LLLTF FR    LI  GF+YI  PPLY 
Sbjct: 420 GVG-PEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAIPPLYK 478

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589
           I++GK + Y  +E   E +L                  G ++   L  
Sbjct: 479 ISQGKKIFYAYNEREKEKFLAEILKENSKFTIQRYKGLGEMNPEQLWE 526



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 13/225 (5%)

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            + I +   ++           +    QA++       + Q   +    K    L+ I  
Sbjct: 357 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 416

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE-----NYL 702
                     + S I  ++I   +      +GS I S    +   +  ++ E       +
Sbjct: 417 -FGTGVGPEFDISKIRYQKII--IMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAI 473

Query: 703 TILSLICNGDKIK-ITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
             L  I  G KI            L  I     K  ++QRYKGLGEMN  QLWETT++P 
Sbjct: 474 PPLYKISQGKKIFYAYNEREKEKFLAEILKENSK-FTIQRYKGLGEMNPEQLWETTMDPQ 532

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           TR + +V+I D      +F  LMG +V  R+ FI+EN+  + +DI
Sbjct: 533 TRRMYQVQIHDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAKVDI 577


>gi|119369922|gb|ABL67975.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 320/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF   SYKVSGGLHGVGVSVVNALS +L L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFGASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT + F PS+ IF+   FN+D L  RLRELSFLNS V+I LID+R  
Sbjct: 61  APLAPVGPSE-QRGTTIRFKPSAQIFTHIQFNHDILAKRLRELSFLNSGVRIELIDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E       ++GG++AFV YL+R + P+ +S    +     ++I +A++WND Y E++ C+
Sbjct: 118 ENTSDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPVTIKVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK    GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMPAKKDKVPTTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ +VE+ V+  L  +L EHP +AK I+ K+L+A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148470182|gb|ABQ66039.1| gyrase b [uncultured bacterium]
 gi|148971303|gb|ABR20189.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 255/421 (60%), Positives = 326/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDQLQLTIHRDGKVHRREYHLGTPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V+G +    GT + F PS++IF+   FNY+ L  RLRELSFLNS V+I L+D+R  
Sbjct: 61  APLAVSGPSE-QRGTTIRFKPSAEIFTHIQFNYEILAKRLRELSFLNSGVRIELVDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E R     ++GG++AFV YL+R + P+  + +  +     ++I++A++WND Y E++ C+
Sbjct: 118 ENRSDVFQHEGGLQAFVKYLNRSRTPVHDTVLWFKSQDGPVTIEVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK +  GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKESSAKKDKLTTTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ +VE+ V   L  +L EHP +AK IV K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGIVEAAVGAKLQDFLLEHPQDAKAIVAKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+A LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDVAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKML+S E+GTLITALG GIG+D FDI KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLASAEVGTLITALGCGIGKDDFDIAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148470226|gb|ABQ66060.1| gyrase b [uncultured bacterium]
          Length = 419

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 255/422 (60%), Positives = 315/422 (74%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R G I+E  + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   N TGT V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R  
Sbjct: 61  YPLKVVGDT-NRTGTRVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERI- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLC 275
              E    Y+GG+  FV Y++     L            + I++++A++WND Y ENV C
Sbjct: 119 -NAEHVFDYEGGLSEFVKYINEGNTHLNDIFHFTAAQADNGITVEVALQWNDSYQENVRC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQKDGGTHL+G R+ALTR + +Y++     KK+K +V GDD REG T+++S+K+P
Sbjct: 178 FTNNIPQKDGGTHLAGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTKEKLVSSEV++ VE  +N   S +L E+P  AK I  K++DA+  RDAAR+A
Sbjct: 238 DPKFSSQTKEKLVSSEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRK  LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+G
Sbjct: 298 REMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVERARFD+M+SS E+GTLITALG GIG++ ++ +KLRYHKIIIMTDADVDG+HIRT
Sbjct: 358 KILNVERARFDRMISSAEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|148470264|gb|ABQ66079.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 323/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTVFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|154496379|ref|ZP_02035075.1| hypothetical protein BACCAP_00667 [Bacteroides capillosus ATCC
           29799]
 gi|150274462|gb|EDN01539.1| hypothetical protein BACCAP_00667 [Bacteroides capillosus ATCC
           29799]
          Length = 660

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 174/664 (26%), Positives = 305/664 (45%), Gaps = 28/664 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    + +Y  +SI  LKG D V+KRP++  G  DG  G  H ++E+L NAIDE+ EG+
Sbjct: 1   MAK--ASKTYGNESISALKGADRVRKRPAVIFGS-DGLEGCEHAVFEILSNAIDEAREGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF---NQKSYKVS 117
             +ITVT   D S  V D GRG P D +++E     E++   L+AGGK+   +  +Y+ S
Sbjct: 58  GSVITVTRYEDKSIEVEDFGRGCPVDWNEKEQKYNWELVFCELYAGGKYNNNDGDNYEYS 117

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+G+G       S +    I R+G  Y + F  G     L      G  TG++  + P
Sbjct: 118 LGLNGLGSCATQYASEYFDAVIHRDGFEYTLHFEKGENIGGLKKEPYTGKKTGSKFRWKP 177

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             ++F+      +     ++  + +N+ V     ++   +       Y  GIE +V  L 
Sbjct: 178 DLEVFTDISIPVEYYLDVMKRQAVVNAGVTFRFRNQVGSKFEATEFKYDNGIEDYVKELA 237

Query: 238 RHKKPLMQSPIRIQ------GSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHLS 290
                      + +        +    + L++ +        +  + N+   + GG+   
Sbjct: 238 GENPLTQPVFWQTERKGRDREDKPEYKVKLSVSFCFSNAVQIIEHYHNSSWLEHGGSPEK 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +RSA    I  Y++     +K +  +  +D ++    V +       + +QTK+ + + 
Sbjct: 298 AMRSAFVSAIDGYLKAQGKYQKSESKITWNDIQDCLILVSNNFSTQTSYENQTKKAINNK 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDIA 408
            V+  +  F+   +  +  E+P +A+ I ++VL     R+ A +AR   ++K  G +DI+
Sbjct: 358 FVQEAMTEFLKSQMEVYFIENPFDAQKIGEQVLINKRARENAEKARLNIKKKLTGSMDIS 417

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +   K  DC  +D ++ EL++VEGDSA G+ K  R  E Q I+P+RGKILN  +A + K+
Sbjct: 418 NRVQKFVDCRTKDTERRELYIVEGDSAMGAVKLSRDAEFQGIMPVRGKILNCLKADYAKI 477

Query: 469 LSSQEIGTLITALGTGIGQDS--------FDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             S+ I  L+  LG G+  +         FD+  LR++K++I TDADVDG  IRTL+LT 
Sbjct: 478 FKSEIITDLLKVLGCGVEVNDKHAKDMATFDLMNLRWNKVVICTDADVDGFQIRTLILTM 537

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +R  P+LI  G++YI + PLY I   +   +   ++   D L +    +         G
Sbjct: 538 LYRLTPTLIQRGYVYIAESPLYEINCKEKTWFAYSDKEKNDILASLEGKKFTVQRSKGLG 597

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
               + +         ++   +       +     A +  +   ++ Q     +A     
Sbjct: 598 ENEPDMMW-----LTTMNPETRRLIKVMPEDVERTAQVFDLLLGDNLQGRKDHIAENGYK 652

Query: 641 RLNF 644
            L  
Sbjct: 653 YLEL 656



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 107/312 (34%), Gaps = 41/312 (13%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I+N F+               + ++++    +       +++      + 
Sbjct: 344 TSYENQTKKAINNKFVQEAMTEFLKS--QMEVYFIENPFDAQKIGEQVLINKRARENAEK 401

Query: 579 KGVISKNDLRNFIDDALKIDKLIK---DFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
             +  K  L   +D + ++ K +          +   +E     G      D E    + 
Sbjct: 402 ARLNIKKKLTGSMDISNRVQKFVDCRTKDTERRELYIVEGDSAMGAVKLSRDAEF-QGIM 460

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR---- 691
                 LN +     K +   I    + V      V ++   + ++      ++ +    
Sbjct: 461 PVRGKILNCLKADYAKIFKSEIITDLLKVLGCGVEVNDKHAKDMATFDLMNLRWNKVVIC 520

Query: 692 ---------IFSNRIEENYLTILSLICNGDKIKITGPC-------------------SLL 723
                    I +  +   Y    +LI  G       P                     +L
Sbjct: 521 TDADVDGFQIRTLILTMLYRLTPTLIQRGYVYIAESPLYEINCKEKTWFAYSDKEKNDIL 580

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
            ++   G+K  ++QR KGLGE     +W TT+NP+TR L++V   D  +   +F  L+GD
Sbjct: 581 ASL--EGKK-FTVQRSKGLGENEPDMMWLTTMNPETRRLIKVMPEDVERTAQVFDLLLGD 637

Query: 784 EVEPRREFIQEN 795
            ++ R++ I EN
Sbjct: 638 NLQGRKDHIAEN 649


>gi|91789025|ref|YP_549977.1| DNA topoisomerase IV subunit B [Polaromonas sp. JS666]
 gi|91698250|gb|ABE45079.1| DNA topoisomerase IV subunit B [Polaromonas sp. JS666]
          Length = 659

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 213/619 (34%), Positives = 302/619 (48%), Gaps = 44/619 (7%)

Query: 1   MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+D     ++ Y   SI++LKGL+ VK+RP MY   T  ++ L H+I EVLDN+ DE+L 
Sbjct: 1   MADKLSTASNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HIIQEVLDNSADEALA 56

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYK 115
           GY   I VTL+ DGS +V D+GRGIP  LH EE     E++ TRLHA     K    +Y 
Sbjct: 57  GYGKKIKVTLHTDGSVSVEDDGRGIPFGLHPEEKAPVVELVFTRLHAGGKFDKGKGGAYS 116

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTEV 173
            SGGLHGVGVSV NALS  L++   REG +  + F  G +   L +  +A  D   GT V
Sbjct: 117 FSGGLHGVGVSVTNALSKRLEVMSYREGMVARLVFSGGDVIEKLQLRKAAEGDRKCGTSV 176

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
              P +  F         L H LR  + L   V ++L ++++ E +  T  YKGG+  ++
Sbjct: 177 RAWPDAKYFESAALPMAELTHLLRSKAVLMPGVTVTLTNEKTKETQ--TWAYKGGLRDYL 234

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN----------ISIDLAMRWNDGYHENVLCFTNNIPQK 283
                            +G                    + + +        + N IP  
Sbjct: 235 MQTLTAD----PVIPMFEGEGFADASHDSFAEGEGAQWCVAFTEDGQPMRESYVNLIPTS 290

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH SGLR  L   + S+++           ++ +D     + VLS K+ DP+F  Q 
Sbjct: 291 AGGTHESGLRDGLFTAVKSFIDLH-SLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQI 349

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +   +V SFV   L  WL +H    + + +    A       ++A     ++ 
Sbjct: 350 KERLNSRDAVRLVSSFVRPTLELWLNQHVDYGRKLAE---LAIKAAQTRQKAGQKVEKRK 406

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +A LPGKL DC  +D   +E+FLVEGDSAGGSAK GR +E+QAILPLRGK+LN    
Sbjct: 407 GSGVAVLPGKLTDCESKDLAHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEV 466

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             D++ ++ EI  +  A+G          +   LRY K+ I++DADVDG+HI+ LLLT F
Sbjct: 467 ERDRLFANTEIHDIAVAIGVDPHGPHDKPDLSGLRYGKVCILSDADVDGSHIQVLLLTLF 526

Query: 522 FRQMPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----E 570
           FR  P LI  G +Y+ +PPL+ +       +  S  Y  DE  L   L            
Sbjct: 527 FRHFPKLIEAGNVYVARPPLFRVDAPARGKKPASKVYALDEGELTAILDKLRKDGVRENA 586

Query: 571 EIELFCDSKGVISKNDLRN 589
                    G +S   L  
Sbjct: 587 WSISRFKGLGEMSAEQLWE 605



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
             ++LD +   G      S+ R+KGLGEM+A QLWETTLNPDTR LL V++   D  Q +
Sbjct: 570 LTAILDKLRKDGVRENAWSISRFKGLGEMSAEQLWETTLNPDTRRLLPVQLGNFDFLQTE 629

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            L ++LMG  E   RRE ++ +     +DI
Sbjct: 630 SLITKLMGKGEAAARRELMELHGDAVEIDI 659


>gi|119370000|gb|ABL68014.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 320/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF   SYKVSGGLHGVGVSVVNALS +L L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFGASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT + F PS+ IF+   FN+D L  RLRELSFLNS V+I LID+R  
Sbjct: 61  APLAPVGPSE-QRGTTIRFKPSAQIFTHIQFNHDILAKRLRELSFLNSGVRIELIDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E       ++GG++AFV YL+R + P+ +S    +     ++I +A++WND Y E++ C+
Sbjct: 118 ENTSDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPVTIKVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK    GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ +VE+ V+  L  +L EHP +AK I+ K+L+A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|9971343|dbj|BAB12478.1| DNA gyrase B subunit [Flammeovirga aprica]
          Length = 476

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 228/469 (48%), Positives = 312/469 (66%), Gaps = 9/469 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ LK+ + R G +++  +  GI    +   G   + T
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTDLKVTVHRAGKVFQQEYKTGIPQYDVKTIGET-DIT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFY 225
           GT V F P   IF+   +NYDT+  RLRELS+LN+ + I L DKR      E  + T + 
Sbjct: 60  GTTVQFWPDLSIFTSGVYNYDTVASRLRELSYLNAGITIHLEDKREQDEEGENIQETFYS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  +VSYLD  ++ L+ +PI ++G + NI + +AM +N  + E+V  + NNI   +G
Sbjct: 120 EGGLSEYVSYLDNTRQALLGTPIFMEGEKANIQVQVAMTYNTSFSEHVFSYVNNINTYEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R +LTR + SY + +    K K  + GDD REG T+++S+K+P+P+F  QTK 
Sbjct: 180 GTHVAGFRRSLTRTLKSYADSTGLLDKVKIDIAGDDFREGLTAIISVKVPEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SEV   V+S V + L  +LEEHP EAK IV+KV+ A+  R AAR+AR++ +RK VL
Sbjct: 240 KLGNSEVSGAVDSAVTETLKTFLEEHPKEAKNIVQKVITAAQARHAARKAREMVQRKNVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKL+DCSE+DP   EL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A+ 
Sbjct: 300 TGTGLPGKLSDCSEKDPALCELYLVEGDSAGGSAKQGRDRNFQAILPLKGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  +ITALG   G ++ +      KLRYHKIIIMTDADVDG+HIRTL+LT F
Sbjct: 360 HKIYDNEEIKNIITALGVRFGTENDEKELNLEKLRYHKIIIMTDADVDGSHIRTLILTLF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           FR M  LI  G+LYI +PPLY + +GK  +Y   E+     +      E
Sbjct: 420 FRYMKPLIEQGYLYIAQPPLYLVKKGKQEKYCWSEDDRVRAIQEFGGDE 468


>gi|148470252|gb|ABQ66073.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 323/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|13517011|dbj|BAB40388.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04450]
 gi|13517019|dbj|BAB40392.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04454]
          Length = 474

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 218/465 (46%), Positives = 305/465 (65%), Gaps = 10/465 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG ++E  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVYREGKVWEQEYERGKTLYPVKTVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P   IF    ++NYDTL  R+REL++LN  + + L+DKR  +        T  
Sbjct: 60  GTIVTFKPDPQIFQQTLEYNYDTLASRMRELAYLNRGITVHLVDKRHKKEDGSYEGETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G+  FV +LD +++PLM+  I  +G ++ + +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLSEFVKFLDGNREPLMKDVISFEGEKNGVPVEVAMVYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADGSGMLDKLKFDISGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVSASVSQAVSEMLTDYLEEHPEDAKTIVQKVILAAQARHAAQKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +      ++ KLRYHK++IM DAD+DG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIFTALGVTIGTEEDPRALNLTKLRYHKVVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           FFR M  LI NGF+YI  PPLY + +G   QY   ++  +  + +
Sbjct: 420 FFRYMRELIENGFVYIATPPLYLVKKGAKKQYAWSDKDRDAIISD 464


>gi|119369888|gb|ABL67958.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
 gi|119369892|gb|ABL67960.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 323/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIITKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|9971351|dbj|BAB12482.1| DNA gyrase B subunit [Zobellia uliginosa]
          Length = 474

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 222/463 (47%), Positives = 305/463 (65%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVSVVNALS  LK  + R+G I+E  +  G    P+   G    + 
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSDRLKATVYRDGKIWEQEYERGKALYPVKSIGETE-ER 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF P   IF     ++Y+TL +R+RELSFLN  V IS+ D+R      E    T +
Sbjct: 60  GTMVTFHPDDQIFQQTIEYSYETLANRMRELSFLNKGVTISITDRRQKDEKGEFLSETFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ FV +LD +++PL+QS I ++G +++I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SDEGLKEFVKFLDGNREPLIQSVISMEGEKNDIPVEVAMIYNTSYTENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S   +K K  V GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTTTLKKYADASGMLEKLKFEVQGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ LS +LEEHP +AK+IV+KV+ A+  R AA +AR++ +RK V
Sbjct: 240 TKLGNREVSSAVSQAVSEMLSDYLEEHPDDAKVIVQKVILAAQARHAATKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP + E+FLVEGDSAGG+AK GR R+ QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKMGRDRKFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEDDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  LI  G +YI  PPLY + +G   +Y   ++  ++  
Sbjct: 420 FFRYMRELIEGGHVYIATPPLYLVKKGSKKRYAWSDKERDEIA 462


>gi|148927748|ref|ZP_01811183.1| DNA topoisomerase (ATP-hydrolyzing) [candidate division TM7
           genomosp. GTL1]
 gi|147886902|gb|EDK72437.1| DNA topoisomerase (ATP-hydrolyzing) [candidate division TM7
           genomosp. GTL1]
          Length = 572

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 229/494 (46%), Positives = 309/494 (62%), Gaps = 3/494 (0%)

Query: 88  HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
           H + G S  E ++T LHAGGKF    YKVS GLHGVG SVVNALSS L   + ++G +Y 
Sbjct: 1   HPKTGKSTLETVLTVLHAGGKFGGGGYKVSSGLHGVGSSVVNALSSKLVAEVHKDGKLYR 60

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
             +  G+    L V G    + GT  TF P  DIF   D +Y  +   LR  ++L   V 
Sbjct: 61  QEYERGVPVTKLEVVGKTAKNQGTTTTFYPDPDIFEAVDLDYKWVVDYLRHQAYLTKGVF 120

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           +S+ D+RS E   I  +++GGI+++V +L+  K  L      ++   ++  +++A+++ND
Sbjct: 121 VSVSDERSGER--IAFYFEGGIQSYVKHLNIGKDILSDDIFYVERQVEDCIVEVAVQYND 178

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y E V  F NN+   DGGTHL G R+ALTR I  Y  KS   K+ + ++ GDD REG T
Sbjct: 179 TYVETVKAFANNVYNPDGGTHLIGFRAALTRVINDYARKSGLLKEKEENLTGDDIREGLT 238

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++ +K+PDP+F  QTK KL + E+R  VE  +N+  + +LEEHP  AK I+ K L A+ 
Sbjct: 239 AIILVKLPDPQFEGQTKNKLGNPEMRRYVEQVMNEYFAYYLEEHPNTAKKIINKALLAAR 298

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AAR AR+   RKG LD  SLPGKLADCS +DPK SEL++VEGDSAGGSAK GR  + 
Sbjct: 299 ARKAARAARENVIRKGALDGLSLPGKLADCSSKDPKDSELYIVEGDSAGGSAKSGRDSKT 358

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGK+LNVERAR D+ML++ EI +LI A+G GI  + FDIN LRY +IIIMTDAD
Sbjct: 359 QAILPLRGKVLNVERARLDRMLNNNEIVSLIKAMGVGI-DEQFDINGLRYDRIIIMTDAD 417

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDG HI TLL+TFFFR M  ++  G +Y+ KPPL+ +  G    Y   +E     + +  
Sbjct: 418 VDGNHIATLLMTFFFRYMREVVDGGHIYLAKPPLFLVRAGSKKYYAYSDEERGQIIDDLV 477

Query: 568 LSEEIELFCDSKGV 581
              +       +G 
Sbjct: 478 KERKERGTKIDEGA 491



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 22/205 (10%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +   +   +++ + +  +    ++ +  +    D ++      V    +    
Sbjct: 368 VLNVERARLDRMLNNNEIVSLIKAMGVGIDEQFDINGLRYDRIIIMTDADVDGNHIATLL 427

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGR-KGISM 736
             F F    + +    I      +  +     K           ++D +    + +G  +
Sbjct: 428 MTFFFRYMREVVDGGHIYLAKPPLFLVRAGSKKYYAYSDEERGQIIDDLVKERKERGTKI 487

Query: 737 ---------------QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
                          QRYKGLGEM+A QLWETT+NP+ R L++VKI DA +AD +F++LM
Sbjct: 488 DEGADRNKQAGVTLLQRYKGLGEMDAEQLWETTMNPENRVLVQVKIEDAEKADAIFTKLM 547

Query: 782 GDEVEPRREFIQENSLPSA---LDI 803
           GDEVE R+ FIQ  +       LD+
Sbjct: 548 GDEVELRKHFIQSRAKFVNTEDLDV 572


>gi|319941584|ref|ZP_08015910.1| DNA topoisomerase [Sutterella wadsworthensis 3_1_45B]
 gi|319804954|gb|EFW01796.1| DNA topoisomerase [Sutterella wadsworthensis 3_1_45B]
          Length = 655

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 202/560 (36%), Positives = 288/560 (51%), Gaps = 24/560 (4%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   Y  ++I++LKGL+ VK+RP MY   T  ++ L H+I EV+DNA DE L GY   I+
Sbjct: 3   KKEEYGVEAIRVLKGLEPVKQRPGMY---TLTDNPL-HIIQEVIDNASDEVLAGYGKRIS 58

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKVSGGLH 121
           V +  DGS TV D+GRGIPT +H EE     E++ TRLHAGGKF        Y  +GGLH
Sbjct: 59  VEVAADGSVTVEDDGRGIPTGMHPEEHAPVLEIVFTRLHAGGKFAKADGSGPYTFAGGLH 118

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSS 179
           GVGVSV NALS  L + + R+G    M F +G +  PL +  S+   + TGT VT  P  
Sbjct: 119 GVGVSVTNALSKHLVVTVWRDGQEATMGFRDGFVSEPLEIKKSSRPKSRTGTRVTVWPDP 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F         L   LR  + L    ++  ++K +           GG++ ++    + 
Sbjct: 179 KYFDSPVIPEPALVRLLRSKAVLLPGCEVDYVNKMTGTEAHWKY--SGGLKEYLLSEIKG 236

Query: 240 KKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +  +           D+ S          + W          + N IP   GGTH +GL+
Sbjct: 237 ESLIEPFEASGFADEDSESFSPGEGASWVVVWTAEGPLTRESYVNLIPTPQGGTHEAGLK 296

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L + + ++++     +     ++ +D       VLS K  DP+F  QTKEKL S +  
Sbjct: 297 DGLFQAVRAFMDAHG-LQPKGVKILAEDVFSRVNFVLSTKSLDPQFQGQTKEKLTSRDAV 355

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V  FV      WL +H  E K +V+ ++       A +R      R+    +A LPGK
Sbjct: 356 KLVGGFVRPQFEFWLNDHADEGKKLVEHIISQ---AQARQRQAAKYERRRASTVAVLPGK 412

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC   D  ++ELF+VEGDSAGGSAKQGR +E QA+LPLRGKILN       ++  S  
Sbjct: 413 LTDCESSDITRNELFIVEGDSAGGSAKQGRDKEFQAVLPLRGKILNTWEVEGGELFRSDT 472

Query: 474 IGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           I  +  A+G        + +   LRY KI I++DADVDG+HI+ LLLT FF+  P LI  
Sbjct: 473 IHDIALAIGVDPHHRDGEPDLKGLRYGKICILSDADVDGSHIQVLLLTLFFKHFPKLIEL 532

Query: 532 GFLYIIKPPLYGITRGKSLQ 551
           G +Y+  PPL+ +   K  +
Sbjct: 533 GHVYVAMPPLFRVDAPKKGR 552



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 10/105 (9%)

Query: 708 ICNGDKIKITGPCSL---LDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762
                KI       L   L+++   G   + +S+ R+KGLGEM A QL ETTL PDTR L
Sbjct: 552 RKPDRKIYCLDERELSRTLESLKKEGFTEEQLSISRFKGLGEMKAEQLAETTLAPDTRKL 611

Query: 763 LRV---KITDASQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           L V    I++A     +   LMG+ +V  RR +++     + LD+
Sbjct: 612 LPVAFGSISEA-DTRTVMQTLMGERQVTGRRLWMEAYGDRAELDV 655


>gi|260223058|emb|CBA33241.1| DNA topoisomerase 4 subunit B [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 656

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 210/593 (35%), Positives = 301/593 (50%), Gaps = 27/593 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
                Y   SI++LKGL+ VK+RP MY   T  ++ L H+I EVLDNA DE+L GY   I
Sbjct: 4   KPTPEYSESSIRVLKGLEPVKQRPGMY---TRTDNPL-HIIQEVLDNAADEALAGYGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVSGGLH 121
            VTL+ DGS +V D+GRGIP  +H EE     E++ TRLHA     K    +Y  SGGLH
Sbjct: 60  KVTLHADGSVSVEDDGRGIPFGMHPEEKAPVIELVFTRLHAGGKFDKGKGGAYSFSGGLH 119

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSS 179
           GVGVSV NAL   L+    REG++  + F  G +   L V   G      GT V   P +
Sbjct: 120 GVGVSVTNALGKRLEATSYREGSVAHLVFEGGDVTEALQVRKAGDGDRKQGTTVRVWPDA 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F         L H LR  + L   V ++L+++++ E +     YKGG++ ++      
Sbjct: 180 KYFESAVLPMGELTHLLRSKAVLMPGVSVTLVNEKTKESQ--NWLYKGGLKDYLGQTLSA 237

Query: 240 KK--PLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
               P+        G+ D           + + +        + N IP   GGTH SGLR
Sbjct: 238 DPVIPMFDGEGFADGNNDTFAEGEGATWCVAFTEDGAPVRESYVNLIPTSAGGTHESGLR 297

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L + + S++E           ++ +D     + VLS K+ DP+F  Q KE+L S +  
Sbjct: 298 DGLFQAVKSFIEFH-SLLPKGVKLMPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAV 356

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V SFV   L  WL +H    K + +    A       ++A     ++    +A LPGK
Sbjct: 357 RLVSSFVRPALELWLNQHVDYGKKLAE---LAIKAAQTRQKAGQKVEKRKSSGVAVLPGK 413

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC  RD   +E+FLVEGDSAGGSAK GR +ENQAILPLRGK+LN      D++ ++ E
Sbjct: 414 LTDCESRDIAYNEVFLVEGDSAGGSAKMGRDKENQAILPLRGKVLNTWEVDRDRLFANTE 473

Query: 474 IGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           I  +  A+G      +   +   LRY K+ I++DADVDG+HI+ LLLT FFR  P LI  
Sbjct: 474 IHDISVAIGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPKLIET 533

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           G +Y+ +PPL+ +      +    + + + Y +++     I      +GV   
Sbjct: 534 GHVYVARPPLFRVDAPARGK----KPASKAYALDEGELTAILDKLRKEGVREG 582



 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 7/91 (7%)

Query: 719 PCSLLDTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS---QA 773
             ++LD +   G R+G  S+ R+KGLGEMNA QLW+TTLNPDTR LL V +  A      
Sbjct: 567 LTAILDKLRKEGVREGAWSISRFKGLGEMNAEQLWDTTLNPDTRRLLPVMLG-AINFGDT 625

Query: 774 DDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           + L ++LMG  E   RRE ++ +     +D+
Sbjct: 626 EALITKLMGKGEASSRRELMELHGDSVEIDV 656


>gi|148470248|gb|ABQ66071.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 253/421 (60%), Positives = 315/421 (74%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGL GVGVSVVNALS+WLKL I R+G  + M F  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLRGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ FLPS   F   +F+YD L  RLRELSFLN+ V I L D R  
Sbjct: 61  APLAVVGDSP-KRGTEIHFLPSPLTFGTIEFHYDILARRLRELSFLNNGVSILLKDLRHG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG+  FV YL+R +  L  +     G ++ I++++AM+WN+ Y ENVLCF
Sbjct: 120 QE--ENFSFNGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGITVEVAMQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+A+TR +  ++E++  ++K K    GDD REG T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR  VE  V+D + ++L E P EA+IIV K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD   LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 ELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++SSQEI TLITALGTGIG+D +   K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|13517013|dbj|BAB40389.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04451]
          Length = 474

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 220/475 (46%), Positives = 307/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKAIVHRDGKIWEQEYERGKTLYPVKAVGDT-DKR 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMF 224
           GT VTF P   IF    ++NYDTL  RLREL++LN  + I LID    +        T  
Sbjct: 60  GTIVTFKPDPRIFQQTLEYNYDTLASRLRELAYLNKGITIHLIDQRATEEDGSFEGETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD +++PLMQ  I  +G ++ + +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIKFLDGNREPLMQDAISFEGEKNGVPVEVAMIYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y ++S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEE+P  AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVSACVSQAVSEMLTDYLEENPDTAKTIVQKVILAAQARHAAQKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP+K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPEKCEVFLVEGDSAGGTAKQGRDRTFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHKI+IM DAD+DG+HI TL+LTF
Sbjct: 360 THKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY + +G   QY  +++  +D +     S +I+ +
Sbjct: 420 FFRYMKELIEAGHVYIATPPLYLVKKGNKKQYAWNDKERDDIVKEFGESSKIQRY 474


>gi|222103607|gb|ACM44312.1| GyrB [Shewanella marisflavi]
          Length = 419

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 257/422 (60%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG +YE  +  G  D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRREGKLYEQFYTMGEPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A  +TGTE+ F PSS  FS  +F++D L  R+RELSFLNS V I L+D+R  
Sbjct: 61  EPIKEIGDAT-NTGTEIRFWPSSQTFSDVEFHFDILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+ +K P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 120 KD--EFFKYEGGISAFVDYLNINKTPVNKEIFHFVQEREDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G RSALTR + +Y+++   +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRSALTRNLNTYMDREGFNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P EAK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D +K RYH I+IMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|119369936|gb|ABL67982.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 322/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 ANNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|13516985|dbj|BAB40375.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04449]
          Length = 478

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 229/468 (48%), Positives = 314/468 (67%), Gaps = 9/468 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS  L   + R+G +Y+  +  GI    +   G   +  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSHKLVATVHRKGTVYQQEYSRGIPQYDVKEIGKT-DVN 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----ITMFY 225
           GT V F P  +IF+V ++ YDT+  RLRELS+LN+ ++I L DKR  +        T F 
Sbjct: 60  GTIVHFYPDPEIFTVTEYKYDTVASRLRELSYLNAGIKIDLTDKRDKDDDGNYLGETFFS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG++ FV YLD  ++ L++ PI I+G ++ + + +AM +N  Y E+V+ + NNI   +G
Sbjct: 120 EGGLQEFVQYLDESRETLIEEPIYIEGEKNEVPVQVAMSYNTSYAEHVVSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH+SG R ALTR + +Y ++S    K K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHVSGFRRALTRTLKAYADRSGLLDKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +S+V   VES V D LS +LEEHP  A+ IV KV+ A+  R AAR+AR++ +RK V+
Sbjct: 240 KLGNSDVTGAVESAVGDVLSTYLEEHPKSARQIVAKVVLAAQARHAARKAREMVQRKNVM 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             + LPGKLADC+ +D   SEL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A+ 
Sbjct: 300 SGSGLPGKLADCASKDATISELYLVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  +ITALG   G +      ++ KLRYHKI+IMTDAD+DG+HIRTL+LTFF
Sbjct: 360 HKIYDNEEIKNMITALGVSFGTEEDEKALNMEKLRYHKIVIMTDADIDGSHIRTLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FR M  LI  G+LYI  PPLY + RGK L+Y  DE+    + +  +  
Sbjct: 420 FRYMKPLIDAGYLYIALPPLYLLKRGKELRYCWDEQQRAQFTMEMAKD 467


>gi|119369986|gb|ABL68007.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 254/421 (60%), Positives = 321/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIITKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LT RKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAK+GR R +QAILPL+GK
Sbjct: 298 ELTHRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKKGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS E GTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDETGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|11386844|sp|Q9LCK1|GYRB_CYTHU RecName: Full=DNA gyrase subunit B
 gi|6946707|dbj|BAA90686.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 478

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 224/468 (47%), Positives = 315/468 (67%), Gaps = 9/468 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ +K+ +   G +++  +  GI    +   G + +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTDMKVTVYSHGKVHQQEYKKGIPQYDVKEIGES-DLH 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFY 225
           GT+V FLP   IF+  ++ Y+T+ +RLRELSFLN  ++I+L D R      +        
Sbjct: 60  GTKVQFLPDDTIFTSSEYKYETIANRLRELSFLNKGIRITLQDHRQVDAEGKSEIEMFHS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV YLD  ++ L+ +P+ ++  +  I +++AM +N  Y ENV  + NNI   +G
Sbjct: 120 EGGLREFVDYLDSTREKLIPTPLYMESDKGPIPVEVAMLYNTSYSENVFSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R ALTR + SY +KS   +K K  V GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHVAGFRRALTRTLKSYADKSGMLEKLKMEVTGDDFREGLTAVISVKVQEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +S+V   V+  V + L+ +LEE+P EAKIIV+KV+ A+  R+AAR+AR++ +RK VL
Sbjct: 240 KLGNSDVMGAVDQVVGEMLNTYLEENPKEAKIIVQKVILAAQARNAARKAREMVQRKNVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             + LPGKLADCSE DP+K EL+LVEGDSAGGSAKQGR R+  AILPLRGKILNVE+A+ 
Sbjct: 300 SGSGLPGKLADCSESDPEKCELYLVEGDSAGGSAKQGRDRKYHAILPLRGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLIT----ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            ++  + EI  +IT    + GT  G+   ++ KLRYHK+IIMTDAD+DG+HIRTL+LTFF
Sbjct: 360 HRIYENDEIKNMITALGVSFGTEEGEKVLNLTKLRYHKVIIMTDADIDGSHIRTLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FR M +LI  G +YI +PPLY + RGK  +Y   EE  E  +   +  
Sbjct: 420 FRYMRALIDGGHVYIAQPPLYLVKRGKEEKYCWTEEQREAAVKELAKD 467


>gi|148971395|gb|ABR20235.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 261/421 (61%), Positives = 322/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNAL   L L IKREG ++E  + NG   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALPEHLHLLIKREGKLHEQEYRNGDAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V   A   TGTE+ F PS+ +F+   FNYD L  RLRELSFLNS V+I L D+R  
Sbjct: 61  YPLQVVADA-QGTGTEIRFKPSAKVFTHIQFNYDILARRLRELSFLNSGVRILLHDQRDD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI+AFV +L+R+K  L ++        +  ++++A++WND Y E V CF
Sbjct: 120 K--HDVFQYQGGIKAFVEHLNRNKTALHETVFHFIAEHERTTVEIALQWNDSYQETVYCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR I +Y+E     KK+K  + GDD REG T ++S+K+PD
Sbjct: 178 TNNIPQRDGGTHLAGFRAALTRTINNYIETEGLLKKEKIPMTGDDAREGLTGIVSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VVES +      +L E P+E+KIIV KV++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGVVESLMAGKFEEFLLEKPVESKIIVGKVIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+A LPGKLADC ERDP  SELFLVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 EMTRRKGALDVAGLPGKLADCQERDPALSELFLVEGDSAGGSAKQGRDRKCQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG++ F+I+KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSVEVGTLITALGCGIGKEEFNIDKLRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|119369912|gb|ABL67970.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 279/421 (66%), Positives = 330/421 (78%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF Q +YKVSGGLHGVGVSVVNALS WL+LRI R G  ++M F +G   
Sbjct: 1   EVIMTVLHAGGKFEQNAYKVSGGLHGVGVSVVNALSEWLELRIWRSGQEHKMRFHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL + G A    GTEVTFLPS   F+  +F+Y TL+HRLREL+FLNS V I L D+R  
Sbjct: 61  APLALVGPANGKRGTEVTFLPSPRTFTKTEFDYATLEHRLRELAFLNSGVTIRLSDQRGV 120

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E +E  + Y+GG+EAFV YLDR K  L+ +P+ I G RD I+++ A+ WND YHE++LCF
Sbjct: 121 EKKESKLHYEGGLEAFVRYLDRAKNGLIPAPLLITGERDGITVEAALSWNDSYHESMLCF 180

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR +  Y E S  +KK+K  + GDDCREG T VLS+K+PD
Sbjct: 181 TNNIPQRDGGTHLAGFRAALTRVVIKYAEDSGIAKKEKVQISGDDCREGLTCVLSVKVPD 240

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR VVES   D +  W EEHP EAK +V KV++A+  R+AAR+AR
Sbjct: 241 PKFSSQTKDKLVSSEVRPVVESVAADQIGRWFEEHPGEAKTVVGKVVEAAAAREAARKAR 300

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG  D ASLPGKLADC ERDP K ELF+VEGDSAGGSAKQ R+R NQA+LPLRGK
Sbjct: 301 ELTRRKGAFDSASLPGKLADCQERDPAKCELFIVEGDSAGGSAKQARNRNNQAVLPLRGK 360

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS  I TLITALGT +G + F+  KLRYHKIIIMTDADVDG+HIRTL
Sbjct: 361 ILNVERARFDKMLSSDAIATLITALGTSVGPEEFNPEKLRYHKIIIMTDADVDGSHIRTL 420

Query: 517 L 517
           L
Sbjct: 421 L 421


>gi|13517021|dbj|BAB40393.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04455]
          Length = 474

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 217/475 (45%), Positives = 304/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + REG ++E  +  G    P+  TG   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLHATVHREGKVWEQEYERGKPLYPVKATGET-DFR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P + IF     +NYDTL  R+REL++LN  + I+L D R  +           
Sbjct: 60  GTVVTFKPDTTIFQQTTEYNYDTLASRMRELAYLNKGITITLTDMRHKDDDGNYVSEKFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ FV +LD  + P++ + I ++G +++I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFVKFLDASRNPIIGTVISMEGEKNSIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEISGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L  +LEE+P +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLENYLEENPSDAKTIVEKVILAAQARHAAKKAREMVQRKSV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPALCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHKI+IM DADVDG+HI TL+LTF
Sbjct: 360 HHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHISTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY + +G   QY  +++  +  +     + +I+ +
Sbjct: 420 FFRYMKELIEAGHIYIAAPPLYLVKKGAKKQYAWNDDQRDQIVREFGENSKIQRY 474


>gi|18916447|dbj|BAB85513.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 374

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 214/351 (60%), Positives = 264/351 (75%), Gaps = 2/351 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 DAVAPLKVVGDAPGRRGTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           +PDP+FSSQTK+KLVSSEVR VVE+ +N+ L AW EEHP EAK+IV KV+ 
Sbjct: 299 VPDPKFSSQTKDKLVSSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKVIQ 349


>gi|119370002|gb|ABL68015.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 258/421 (61%), Positives = 323/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ VVES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPVVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|13517009|dbj|BAB40387.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04447]
          Length = 474

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 218/475 (45%), Positives = 304/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + REG ++E  +  G    P+  TG   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLHATVHREGKVWEQEYERGKPLYPVKATGET-DFR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P + IF     +NYDTL  R+REL++LN  + I+L D R  +           
Sbjct: 60  GTVVTFKPDTTIFQQTTEYNYDTLASRMRELAYLNKGITITLTDMRHKDDDGNYVSEKFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ FV +LD  + P++ + I ++G ++NI +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFVKFLDASRNPIIGTVISMEGEKNNIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEISGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L  +LEE+P +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLENYLEENPSDAKTIVEKVILAAQARHAAKKAREMVQRKSV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPALCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHKI+IM DADVDG+HI TL+LTF
Sbjct: 360 HHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHISTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY + +G   QY  +++  +  +     + +I+ +
Sbjct: 420 FFRYMKELIEAGHIYIAAPPLYLVKKGAKKQYAWNDDQRDQIVREFGENSKIQRY 474


>gi|19909599|dbj|BAB86995.1| DNA gyrase subunit B [Halomonas halmophila]
          Length = 378

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 210/381 (55%), Positives = 273/381 (71%), Gaps = 3/381 (0%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISA 95
           D  +GLHHM++E++DN+IDE+L GY   I V ++ D S TVSDNGRGIPTD+H+EEG+SA
Sbjct: 1   DDGTGLHHMVFELVDNSIDEALAGYCSEIRVIIHPDESITVSDNGRGIPTDVHEEEGVSA 60

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I R   ++E  + +G+ 
Sbjct: 61  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELKLTIWRNEQVHEQVYRHGVP 120

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             PL V G     +G+ V F PS + F   +F+YD L  RLRELSFLNS V I L+D+RS
Sbjct: 121 VAPLSVVGKTE-QSGSRVHFKPSPETFHNIEFHYDVLAKRLRELSFLNSGVAIRLMDERS 179

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GG++AFV +L+ +K  L           D + +++AM+WND + EN+ C
Sbjct: 180 GKE--ELFHYEGGLKAFVDHLNTNKTVLNPVFHFNVEREDGVGVEIAMQWNDTFAENIFC 237

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           +TNNIPQ+DGGTHL+G R++LTR +  Y+E     KK K S  GDD REG T+++S+K+P
Sbjct: 238 YTNNIPQRDGGTHLAGFRASLTRTLNHYIEAEGLLKKAKVSTSGDDAREGLTAIISVKVP 297

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  +    + +L E P EAK IV K+LDA+  R+AAR+A
Sbjct: 298 DPKFSSQTKDKLVSSEVKTAVEQEMGRQFAEYLVEKPNEAKSIVNKMLDAARAREAARKA 357

Query: 396 RDLTRRKGVLDIASLPGKLAD 416
           RD+TRRKG LDIA LPGKLAD
Sbjct: 358 RDMTRRKGALDIAGLPGKLAD 378


>gi|148470304|gb|ABQ66099.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 323/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSEMLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|88824779|gb|ABD52435.1| gyrase B [Serratia marcescens]
          Length = 419

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 259/417 (62%), Positives = 324/417 (77%), Gaps = 4/417 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V
Sbjct: 6   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLNV 65

Query: 162 TGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G     TGT V F PS   F+   +F YD L  RLRELSFLNS V I L DKR+   RE
Sbjct: 66  VGETE-QTGTMVRFWPSHQTFTNVTEFEYDILAKRLRELSFLNSGVSIRLKDKRTD--RE 122

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNI
Sbjct: 123 DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNI 182

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL G R+A+TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FS
Sbjct: 183 PQRDGGTHLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 242

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TR
Sbjct: 243 SQTKDKLVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTR 302

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNV
Sbjct: 303 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 362

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           E+ARFDKMLSSQE+ TLITALG GIG+D +  +KLRYH IIIMTDADVDG+HIRTLL
Sbjct: 363 EKARFDKMLSSQEVATLITALGCGIGRDEYSPDKLRYHSIIIMTDADVDGSHIRTLL 419


>gi|56409826|emb|CAH65722.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 254/423 (60%), Positives = 325/423 (76%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH GGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR+G I++  + +G+  
Sbjct: 1   EVIMTVLHGGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G    +TGT + F PS + F+  +F+Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGKTE-ETGTRIRFWPSEETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     ++GGI AFV +L+R+K P+ Q           D I++++AM+WNDG+ E V 
Sbjct: 119 EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTREEDGITVEVAMQWNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CF NNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFPNNIPQRDGGTHLAGFRGALTRPLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR +TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+
Sbjct: 299 ARXMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRXRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV G+HIR
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVXGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|2196790|gb|AAB80812.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 255/422 (60%), Positives = 327/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS D FS  +F+++ L  R+REL+FLNS V I LID+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELAFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKEVFHFMQERDDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG D ++ +K RYH IIIMTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGADEYNPDKTRYHNIIIMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|119369896|gb|ABL67962.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
 gi|119369898|gb|ABL67963.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
 gi|209863977|gb|ACI88906.1| GyrB [Acidithiobacillus ferrooxidans]
 gi|209863979|gb|ACI88907.1| GyrB [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 327/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R+ 
Sbjct: 61  APIAR-GDASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERA- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE T  Y+GGI AFV +L+R K  +  S I + G RD I ++ A++WN+GY+E VLCF
Sbjct: 119 -SREETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGIVVEAALQWNEGYNEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K +V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+MLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148470260|gb|ABQ66077.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 323/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSEMLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSIIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|2196838|gb|AAB80836.1| DNA gyrase beta-subunit [Shewanella hanedai]
          Length = 419

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 255/422 (60%), Positives = 331/422 (78%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L+L ++R+G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTVRRDGKLYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G +  +TGTE+ F PS+D F+   F++D L  R+RELSFLNS V I L+D+R  
Sbjct: 61  EPIKAIGDST-NTGTELRFWPSTDTFTDVLFHFDILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+ +K P+ +        RD+ I++++AM+WNDG+ EN+ C
Sbjct: 120 KD--EFFKYEGGISAFVDYLNVNKTPVNKEVFHFIQERDDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+EK   +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRNLNNYMEKEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L  +L EHP EAK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEQLGDYLIEHPNEAKLIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPAHSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D +K RYH I+I++DADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVVTLITALGCGIGRDEYDPDKTRYHNIVIISDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|9971327|dbj|BAB12470.1| DNA gyrase B subunit [marine bacterium MBIC1357]
 gi|13517027|dbj|BAB40396.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04465]
          Length = 474

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 219/475 (46%), Positives = 307/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G + + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHREGKIWEQEYERGKTLYPVKTIGDS-DKT 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P   IF    ++NYDTL  R+REL++LN  + + L+DKR  +        T  
Sbjct: 60  GTIVTFKPDPQIFQQTLEYNYDTLASRMRELAYLNKGITVHLVDKRHKKEDGSFEGETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G+  FV +LD +++PLM   I  +G ++ + +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLSEFVKFLDGNREPLMNDVISFEGEKNGVPVEVAMVYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y ++S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVSASVSQAVSEMLTDYLEEHPEDAKTIVQKVILAAQARHAAQKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP+K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPEKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHK++IM DAD+DG+HI TL+LTF
Sbjct: 360 THKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI NG +YI  PPLY + +G+   Y   ++  +        S  ++ +
Sbjct: 420 FFRYMKELIENGHIYIATPPLYLVKKGQKKSYAWTDKERDAIAEEFGGSVSVQRY 474


>gi|10039325|dbj|BAB13323.1| DNA gyrase B subunit [Tenacibaculum mesophilum]
 gi|10039345|dbj|BAB13325.1| DNA gyrase B subunit [Tenacibaculum mesophilum]
 gi|10039347|dbj|BAB13326.1| DNA gyrase B subunit [Tenacibaculum mesophilum]
 gi|10039349|dbj|BAB13327.1| DNA gyrase B subunit [Tenacibaculum mesophilum]
          Length = 474

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 216/475 (45%), Positives = 304/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + +EG I++  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGDT-DFT 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT V+FLP   IF     +NYDTL  R+REL++LN  + I+L DKR+ +        T  
Sbjct: 60  GTIVSFLPDKSIFQQTTEYNYDTLATRMRELAYLNKGITITLTDKRNQDDEGNNISETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G+  FV +LD  +  ++Q  I ++G ++ I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SEEGLSEFVKFLDGTRTQIIQDVISMEGEKNGIPVEVAMVYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y ++S   K  K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADESGLLKNVKFEIAGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVSAAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNMFTALGVTIGTEDDPRELNLTKLRYHKVVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  ++  G++YI  PPLY + +G+  +Y  D+   +        S  I+ +
Sbjct: 420 FFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDNQRDLIAQKMGGSVTIQRY 474


>gi|119221383|gb|ABL61895.1| GyrB [uncultured bacterium]
          Length = 417

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 256/420 (60%), Positives = 326/420 (77%), Gaps = 3/420 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R+ 
Sbjct: 61  APIAR-GDASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERA- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE T  Y+GGI AFV +L+R K  +  S I + G RD I ++ A++WN+GY+E VLCF
Sbjct: 119 -SREETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGIVVEAALQWNEGYNEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K +V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+MLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417


>gi|148971421|gb|ABR20248.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 417

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 259/421 (61%), Positives = 323/421 (76%), Gaps = 4/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L + R+G+IYE  + +G  D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLNVHRDGHIYEQHYHHGTPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           NP+ VTG    D+GT + F PSSD F+  +F+YD L  RLRELSFLNS V I L D+RS 
Sbjct: 61  NPIAVTGDTT-DSGTSIWFKPSSDTFTNINFHYDILAKRLRELSFLNSGVCICLTDERSG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI+AFV +L+R+K P+M     + G +D+++++L+M+WND Y EN+ CF
Sbjct: 120 KQ--DKFQYEGGIKAFVEHLNRNKNPIMPEVFSMTGVKDDVTVELSMQWNDSYQENIFCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R ALTR + +Y+E    +KK K         +G T+VLS+K+ D
Sbjct: 178 TNNIPQKDGGTHLAGFRGALTRTLNNYIESEGYAKKLKSPPSATTLVKGSTAVLSVKVHD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV++ VES V++    +L E P  AK IV K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKDKLVSSEVKAAVESLVSEYFHNFLLERPTIAKTIVNKMIEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 DMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSSQE+  LITALG GIG D +D +K+RYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSQEVA-LITALGCGIGPDEYDPDKIRYHRIIIMTDADVDGSHIRTL 416

Query: 517 L 517
           L
Sbjct: 417 L 417


>gi|126734076|ref|ZP_01749823.1| DNA gyrase, B subunit [Roseobacter sp. CCS2]
 gi|126716942|gb|EBA13806.1| DNA gyrase, B subunit [Roseobacter sp. CCS2]
          Length = 326

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 191/315 (60%), Positives = 234/315 (74%), Gaps = 1/315 (0%)

Query: 1   MSDNIQNSS-YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+D+ Q    Y ADSI++LKGL+AV+KRP MYIGDTD  SGLHHM+YEV+DN IDE+L G
Sbjct: 1   MADDPQKQEDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +AD + V +N DGS TV DNGRGIP  +H+EEG+SAAEVIMT+LHAGGKF+  SYKVSGG
Sbjct: 61  HADHVYVKINADGSVTVGDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS +L+LRI R+   +   F  G     L V G A    GTEVTFL S+
Sbjct: 121 LHGVGVSVVNALSDYLELRIWRDDKEHYARFEGGFTKEHLRVEGPANGRKGTEVTFLAST 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           D FS +DF + TL+ RLREL+FLNS V+I L D R  EP +  +FY+GG++ FV YLDR 
Sbjct: 181 DTFSNRDFEFSTLEKRLRELAFLNSGVRIILEDLRPAEPLKADLFYEGGVKEFVKYLDRS 240

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K PLM  PI + G RD+I +++AM WND Y+E VL FTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 241 KTPLMDDPIYVTGERDDIGVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHLAGFRGALTRA 300

Query: 300 ITSYVEKSFGSKKDK 314
           I  Y  ++  SKK+K
Sbjct: 301 IAKYATETGISKKEK 315


>gi|13517037|dbj|BAB40401.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04470]
          Length = 474

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 219/475 (46%), Positives = 307/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G + + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHREGKIWEQEYERGKTLYPVKTIGDS-DKT 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P   IF    ++NYDTL  R+REL++LN  + + L+DKR  +        T  
Sbjct: 60  GTIVTFKPDPQIFQQTLEYNYDTLASRMRELAYLNKGITVHLVDKRHKKEDGSFEGETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G+  FV +LD +++PLM   I  +G ++ + +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLSEFVKFLDGNREPLMNDVISFEGEKNGVPVEVAMVYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y ++S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVSASVSQAVSEMLTDYLEEHPEDAKTIVQKVILAAQARHAAQKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP+K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPEKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHK++IM DAD+DG+HI TL+LTF
Sbjct: 360 THKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI NG +YI  PPLY + +G+   Y   ++  +        S  ++ +
Sbjct: 420 FFRYMKELIENGHIYIATPPLYLVKKGQKKSYAWTDKERDTIAEEFGGSVSVQRY 474


>gi|209863958|gb|ACI88898.1| GyrB [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 255/421 (60%), Positives = 322/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIP+ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPKTDGGTHLAGFRGALTRTLNQYMEREGIITKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +V S +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVXSSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|209863981|gb|ACI88908.1| GyrB [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 327/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGCVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R+ 
Sbjct: 61  APIAR-GDASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERA- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE T  Y+GGI AFV +L+R K  +  S I + G RD I ++ A++WN+GY+E VLCF
Sbjct: 119 -SREETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGIVVEAALQWNEGYNEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K +V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+MLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|56409808|emb|CAH65724.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 256/423 (60%), Positives = 327/423 (77%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVS VNALS  ++L IKR+G I++  + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSXVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G    +TGT + F PS + F+  +F+Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGKTE-ETGTRIRFWPSEETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     ++GGI AFV +L+R+K P+ Q           D I++++AM+WNDG+ E V 
Sbjct: 119 EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTREEDGITVEVAMQWNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSXVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD+TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 ARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG D ++ +KLRYH IIIM DADVDG+HIR
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGXDEYNPDKLRYHNIIIMXDADVDGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|119369890|gb|ABL67959.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 326/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R+ 
Sbjct: 61  APIAR-GDASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERA- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE T  Y+GGI AFV +L+R K  +  S I + G RD I ++ A++WN+GY+E VLCF
Sbjct: 119 -SREETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGIVVEAALQWNEGYNEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K +V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTMFLGEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+MLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148971419|gb|ABR20247.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 318/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y  ++ +G   
Sbjct: 1   EVIMTVLHAGGKFDNNSYKVSGGLHGVGVSVVNALSKKLVLDIWRDGYHYSQTYADGGPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+     A   TGT+V F PS DIF+   F+++ L  RLRELSFLNS V+I L D+R  
Sbjct: 61  TPIEQL-EATQQTGTQVRFYPSDDIFTGTIFDFEILAKRLRELSFLNSGVRIVLTDERDD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +  E    + GG+  FV Y++  K  L +         D IS+++A++W D Y+E VLCF
Sbjct: 120 KRHE--FEHVGGLSEFVHYINAGKTGLNEVFHFTSEENDGISVEVALQWTDSYNEKVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           T+NIPQKDGGTHLSG RSALTR + SY++     KK+K +V GDD REG T+++S+K+PD
Sbjct: 178 TDNIPQKDGGTHLSGFRSALTRCLNSYMDSENLMKKEKVAVTGDDAREGLTAIISVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVS EV+  VES ++D  SA+L E+P  AK I  K++DA+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSGEVKPAVESAMHDKFSAYLLENPNAAKGIAGKIIDAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRK  LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GK
Sbjct: 298 EMTRRKTTLDIAGLPGKLADCQEKDPAISELYIVEGDSAGGSAKQGRNRKMQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSSQE+GTLITALGTGIG D ++ +KLRYHKIIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSQEVGTLITALGTGIGPDEYNPDKLRYHKIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|119369990|gb|ABL68009.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 250/421 (59%), Positives = 319/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GRGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVRTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|222103609|gb|ACM44313.1| GyrB [Shewanella marisflavi]
          Length = 419

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 256/422 (60%), Positives = 328/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG +YE  +  G  D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRREGKLYEQFYTMGEPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A  +TGTE+ F PSS  FS  +F++D L  R+RELSFLNS V I L+D+R  
Sbjct: 61  EPIKEIGDAT-NTGTEIRFWPSSQTFSDVEFHFDILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+ +K P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 120 KD--EFFKYEGGISAFVDYLNINKTPVNKEIFHFVQEREDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGG HL+G RSALTR + +Y+++   +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGAHLAGFRSALTRNLNTYMDREGFNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P EAK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D +K RYH I+IMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|149004061|ref|ZP_01828867.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP14-BS69]
 gi|147757962|gb|EDK64970.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP14-BS69]
          Length = 415

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/376 (47%), Positives = 251/376 (66%), Gaps = 10/376 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F N G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + IFS  DF Y+T+  RL E +FL  +V +SL DKR+ E   I   Y+ G++ FVSYL+
Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K+ L       +G  +   +++A+++NDG+ +N+L F NN+  KDGGTH +GL+SA+T
Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355
           + +  Y  K+   K+  +++ G D REG  +VLSI +P+   +F  QTK+KL S   R V
Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 356 VESFVNDGLSAWLEEH 371
           V+  V D L+ +L E+
Sbjct: 356 VDGIVADKLTFFLMEN 371


>gi|119369976|gb|ABL68002.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 250/421 (59%), Positives = 319/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GRGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|13517065|dbj|BAB40415.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04487]
          Length = 474

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 222/475 (46%), Positives = 308/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G   +D 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTHLKATVYREGKIWEQEYEKGKAMYPVKGIGDT-DDR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTFLP   IF     +NYDTL  R+REL++LN  + I+L DKR      E    T  
Sbjct: 60  GTAVTFLPDPSIFQTTTEYNYDTLASRMRELAYLNKGITITLTDKRQKDDKGEFVSETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ FV +LD +++P++   I ++G +++I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFVRFLDGNRQPIIGEVISMEGEKNDIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTSSLKKYADASGMLDKLKFEITGDDFREGLTAIISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ +  +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMVEIYLEEHPDDAKTIVQKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKLADCSE DP+  E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLADCSETDPEACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRY KI+IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYKKIVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  L+  G +YI  PPLY + +GK ++Y   E+  ++Y      S  ++ +
Sbjct: 420 FFRYMRELVEGGHVYIATPPLYLLKKGKKMRYAWSEKERDEYNAQMGGSASVQRY 474


>gi|9971345|dbj|BAB12479.1| DNA gyrase B subunit [Cytophaga marinoflava]
          Length = 474

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 223/475 (46%), Positives = 309/475 (65%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L+  + R+G I+E  +  G    P+   G   +D 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLRATVYRDGKIWEQEYEKGKAMYPVKGIGDT-DDR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTFLP   IF     FNYDTL  R+RELS+LN  + I+L+DKR      E    T  
Sbjct: 60  GTAVTFLPDPTIFQQTTEFNYDTLASRMRELSYLNKGITITLMDKRQKDEKGEFPVETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ FV ++D +++P++   I ++G +++I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SDEGLKEFVRFMDGNRQPIIGDVISMEGEKNDIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTSSLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ +  +LEEHP +AKIIV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMVEIYLEEHPDDAKIIVQKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKLADCSE DP+  E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLADCSETDPQACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHKI+IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  L+  G +YI  PPLY + +GK ++Y   E+  ++Y      S  ++ +
Sbjct: 420 FFRYMRELVEGGHVYIATPPLYLLKKGKKMRYAWSEKERDEYNEQMGGSAGVQRY 474


>gi|2853303|gb|AAC38147.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 419

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 251/416 (60%), Positives = 327/416 (78%), Gaps = 3/416 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  +
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G A + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  
Sbjct: 61  TPLAVVGDA-DKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREA 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           + +     Y+GGI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ C
Sbjct: 120 DKQ-DHFMYEGGIQAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + S+++K   SKK K +  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRAAITRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+A
Sbjct: 239 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D  + +KLRYH IIIMTDADV+  
Sbjct: 359 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEHNPDKLRYHNIIIMTDADVEAR 414


>gi|119369900|gb|ABL67964.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 257/421 (61%), Positives = 327/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A  + G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R+ 
Sbjct: 61  APIAR-GDASRNHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERA- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE T  Y+GGI AFV +L+R K  +  S I + G RD I ++ A++WN+GY+E VLCF
Sbjct: 119 -SREETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGIVVEAALQWNEGYNEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K +V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+MLSS EIGTLITALGTGIG   FD+ KLRYH +IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHPVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|119369970|gb|ABL67999.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 322/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS +L L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT + F PS+ IF+   FN+D L  RLRELSFLNS V I LID+R  
Sbjct: 61  APLAPVGPSE-QRGTTIRFKPSAQIFTHIQFNHDILAKRLRELSFLNSGVGIELIDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E       ++GG++AFV YL+R + P+ +S  R +     ++I++A++WND Y E++ C+
Sbjct: 118 ENTSDVFPHEGGLQAFVKYLNRSRTPVHESIPRFKTQDGPVTIEVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK    GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ +VE+ V+  L  +L EHP +AK I+ K+L+A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH++II+TDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIITDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148971325|gb|ABR20200.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 253/421 (60%), Positives = 318/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSV NALS +L L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVDNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT + F PS+ IF+   FN+D L  RLRELSFLNS V+I LID+R  
Sbjct: 61  APLAPVGPSE-QRGTTIRFKPSAQIFTHIQFNHDILAKRLRELSFLNSGVRIELIDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E       ++GG++AF  YL+R + P+ +S    +     +SI++A++WND Y E++ C+
Sbjct: 118 ENTSDVFQHEGGLQAFRKYLNRSRTPVHESIPWFKTQDGPVSIEVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK    GDD REG T++LS+++PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLTAILSVQLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQ K+KLVSSEV+ +VE+ V   L  +L EHP +AK I+ K+L+A+  R+AAR+AR
Sbjct: 238 PKFSSQAKDKLVSSEVKGIVEAAVGAKLQDFLLEHPQDAKAIIAKMLEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|2267076|gb|AAB63503.1| gyrase B subunit [Pseudoalteromonas tetraodonis]
          Length = 422

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 256/416 (61%), Positives = 324/416 (77%), Gaps = 6/416 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+REG ++E ++  G+ +
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPN 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G A + TGTE+ F PS + F+  DF+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGDA-DTTGTELRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVL 274
           E +     Y GGI+AFV YL+R+K P+ +        R+   IS++++M+WNDG+ EN+ 
Sbjct: 119 ENKTDHFKYDGGIQAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDGFQENIY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSI 332
           CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VE  + +  S +L E+P++AKI+V K++DA+  R+AA
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAARAREAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG +D+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           L+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D  KLRYH IIIMTDADV
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHSIIIMTDADV 414


>gi|119369902|gb|ABL67965.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 326/421 (77%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F P   +F+   F+++ +  RLREL+FLNS V I+L+D+R+ 
Sbjct: 61  APIAR-GDASRKHGSTIRFKPPPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERA- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE T  Y+GGI AFV +L+R K  +  S I + G RD I ++ A++WN+GY+E VLCF
Sbjct: 119 -SREETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGIVVEAALQWNEGYNEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K +V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+MLSS EIGTLITALGTGIG   FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|2196810|gb|AAB80822.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 256/422 (60%), Positives = 324/422 (76%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS   FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEYTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K PL +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPLNKDVFHFMQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+ TRRKG LD+  LPGKLADC E+DP  SE+ +VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REKTRRKGALDLGGLPGKLADCQEKDPGLSEINIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG D ++ +K RYH IIIMTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGADEYNPDKTRYHNIIIMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|126035196|gb|ABN72351.1| gyrase B subunit [Aeromonas caviae]
          Length = 411

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 252/413 (61%), Positives = 316/413 (76%), Gaps = 3/413 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G   
Sbjct: 2   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQ 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  
Sbjct: 62  APLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER-- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CF
Sbjct: 119 DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K+PD
Sbjct: 179 TNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
            +FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR
Sbjct: 239 LKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 299 ELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILNVE+ARF KM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDADV 
Sbjct: 359 ILNVEKARFGKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADVT 411


>gi|119369906|gb|ABL67967.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 250/421 (59%), Positives = 318/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GRGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E    + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQVDGGTHLTGFRSAMTRVLGGYMEPEGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|11386843|sp|Q9LCK0|GYRB_CYTAU RecName: Full=DNA gyrase subunit B
 gi|6939976|dbj|BAA90687.1| DNA gyrase subunit B [Cytophaga aurantiaca]
          Length = 478

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 223/468 (47%), Positives = 314/468 (67%), Gaps = 9/468 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ +K+ +   G +++  +  GI    +   G +    
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTDMKVTVYSHGKVHQQEYKKGIPQYDVKEIGESEIH- 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFY 225
           GT+V FLP   IF+  ++ Y+T+ +RLRELSFLN  ++I+L D R      +    T   
Sbjct: 60  GTKVQFLPDDSIFTSSEYKYETIANRLRELSFLNKGIRITLQDHREVDADGKSEIETFHS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV Y+D  ++ L+  P+ ++  +  I +++AM +N  Y ENV  + NNI   +G
Sbjct: 120 EGGLREFVEYVDSTRERLIPRPLYMESDKGPIPVEVAMLYNTSYSENVFSYVNNINTVEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R ALTR + SY +KS   +K K  V GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHVAGFRRALTRTLKSYADKSGMLEKLKMEVTGDDFREGLTAVISVKVQEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +S+V   V+  V + L+ +LEE+P EAKIIV+KV+ A+  R+AAR+AR++ +RK VL
Sbjct: 240 KLGNSDVMGAVDQVVGEMLNTYLEENPKEAKIIVQKVILAAQARNAARKAREMVQRKNVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             + LPGKLADCSE DP+K E++LVEGDSAGGSAKQGR R+  AILPLRGKILNVE+A+ 
Sbjct: 300 SGSGLPGKLADCSESDPEKCEIYLVEGDSAGGSAKQGRDRKYHAILPLRGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLIT----ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            ++  + EI  +IT    + GT  G+   ++ KLRYHK+IIMTDAD+DG+HIRTL+LTFF
Sbjct: 360 HRIYENDEIKNMITALGVSFGTEEGEKVLNLTKLRYHKVIIMTDADIDGSHIRTLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FR M +LI  G +YI +PPLY + RGK  +Y   EE  E  +   +  
Sbjct: 420 FRYMRALIDGGHVYIAQPPLYLVKRGKEEKYCWTEEQREVAVKELAKD 467


>gi|119369992|gb|ABL68010.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 323/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++II+TDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIITDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|18916432|dbj|BAB85508.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 374

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 214/351 (60%), Positives = 266/351 (75%), Gaps = 2/351 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNSDNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 DAVAPLKVVGDAPGRRGTEVTFLASTETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK ++ +PI ++ + + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSAANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           +PDP+FSSQTK+KLVSSEVR VVE+ +N+ L AW EEHP EAK+IV KV+ 
Sbjct: 299 VPDPKFSSQTKDKLVSSEVRPVVENVLNEALQAWFEEHPGEAKMIVGKVIQ 349


>gi|326316174|ref|YP_004233846.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373010|gb|ADX45279.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 660

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 216/628 (34%), Positives = 304/628 (48%), Gaps = 32/628 (5%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+    +   S Y   SI++LKGL+ VK+RP MY   T  ++ L H+I EVLDNA DE+L
Sbjct: 1   MAAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HIIQEVLDNAADEAL 56

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSY 114
            G+   I VTL  DGS  + D+GRGIP  LH EE     E++ TRLHA     K    +Y
Sbjct: 57  AGHGKRIKVTLFADGSVGIEDDGRGIPFGLHPEEKAPVIELVFTRLHAGGKFDKGKGGAY 116

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTE 172
             SGGLHGVGVSV NAL+  L+    R+G I  + F  G +  PL     A  +   GT 
Sbjct: 117 SFSGGLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEPLTARPLAAGERRQGTT 176

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V   P    F       + L H LR  + L   V +SL+++++ E +      KGG+  +
Sbjct: 177 VRVWPDGKYFESTALPMNELVHLLRSKAVLMPGVTVSLVNEKTKETQTWQY--KGGLRDY 234

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGG 286
           +         +          R N S          + + D        + N IP   GG
Sbjct: 235 LGQSLSADPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIPTSAGG 294

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH +GLR  L + + S++E           ++ +D     + VLS K+ DP+F  Q KEK
Sbjct: 295 THDAGLRDGLFQAVKSFIELH-SLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQVKEK 353

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L S +   +V S+V   L  WL +H    K + +    A       ++A     +K    
Sbjct: 354 LNSRDAVRLVSSYVRPALELWLHQHVDYGKKLAE---LAIKAAQTRQKAGQKVEKKKGSG 410

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +A LPGKL DC  RD   +E+FLVEGDSAGGSAK GR +E QA+LPLRGK+LN      D
Sbjct: 411 VAVLPGKLTDCESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEVDRD 470

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           ++ ++ EI  +  ALG      +   +   LRY K+ I++DADVDG+HI+ LLLT FFR 
Sbjct: 471 RLFANTEIHDISVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRH 530

Query: 525 MPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
            P LI  G +Y+ +PPLY +       +  S  Y  D+  LE  L   +        C  
Sbjct: 531 FPKLIETGHIYVARPPLYRVDVPARGKKPASKVYALDDGELEAILDKCAKDGVAREKCQI 590

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYP 606
                  ++         ++   +   P
Sbjct: 591 SRFKGLGEMNAEQLWETTLNPDTRRLLP 618



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 723 LDTIFSI-GRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQAD 774
           L+ I     + G+      + R+KGLGEMNA QLWETTLNPDTR LL V++ D   ++ +
Sbjct: 571 LEAILDKCAKDGVAREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGDLGFAETE 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            L ++LMG  E   RRE ++ +     +DI
Sbjct: 631 GLITKLMGKGEAAARRELMELHGDAVEVDI 660


>gi|56409812|emb|CAH65715.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 254/423 (60%), Positives = 325/423 (76%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH GGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR+G I++  + +G+  
Sbjct: 1   EVIMTVLHXGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G    +TGT + F PS + F+  +F+Y+ L  RLRELS LNS V I L D+R  
Sbjct: 61  APLAVIGKTE-ETGTRIRFWPSEETFTNIEFHYEILAKRLRELSXLNSGVSIKLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     ++GGI AFV +L+R+K P+ Q           D I+++ AM+WNDG+ E V 
Sbjct: 119 EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTREEDGITVEGAMQWNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD+TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 ARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ T ITALG GIG+D ++ +KLRYH IIIMTDA VDG+HIR
Sbjct: 359 GKILNVEKARFDKMLSSQEVATXITALGCGIGRDEYNPDKLRYHNIIIMTDAXVDGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|148971423|gb|ABR20249.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 244/421 (57%), Positives = 319/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS  L L I+  G +YE  +  G   
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSQELHLVIRMNGKVYEQYYHMGNPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G    + GTEV F PS+++F   +FNYDTL  RLREL+FLN+S++I L D+R+ 
Sbjct: 61  APLAEVGQTT-ERGTEVRFKPSAEMFKNIEFNYDTLAKRLRELAFLNTSIKIYLADERTD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +    +  Y GG++ FV  L+R+K P+          ++ +++++A++WND Y E + C+
Sbjct: 120 KK--DSFEYHGGLKGFVEDLNRNKTPIHSKIFYFSAEKERVTVEVAVQWNDTYQEKLFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTH++G RSALTR   +Y+EK   +KK+K +  GDD REG T+VLS+KMP+
Sbjct: 178 TNNIPQRDGGTHVAGFRSALTRVFNNYLEKEGYAKKEKVATSGDDLREGLTAVLSVKMPN 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FS+QTK+KLVSSE++S+VES + +    +L E+P +AK IV KV++A+  R+AAR+AR
Sbjct: 238 PKFSAQTKDKLVSSEIKSIVESLMGERFQDFLMENPQDAKNIVGKVIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRK  LD+A LPGKLADC E DP KSELF+VEGDSAGGSAKQ R R++QA+LPL+GK
Sbjct: 298 ELTRRKSALDVAGLPGKLADCQEEDPGKSELFIVEGDSAGGSAKQARDRKSQAVLPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+ TLITALG GIG++ +  +K RYH IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVATLITALGCGIGREEYSPDKTRYHSIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|13517033|dbj|BAB40399.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04468]
          Length = 474

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 222/475 (46%), Positives = 308/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G   +D 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTHLKATVYREGKIWEQEYEKGKAMYPVKGIGDT-DDR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTFLP   IF     +NYDTL  R+REL++LN  + I+L DKR      E    T  
Sbjct: 60  GTAVTFLPDPSIFQTTTEYNYDTLASRMRELAYLNKGITITLTDKRQKDDKGEFVSETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ FV +LD +++P++   I ++G +++I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFVRFLDGNRQPIIGEVISMEGEKNDIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTSSLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ +  +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMVEIYLEEHPDDAKTIVQKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKLADCSE DP+  E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLADCSETDPEACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRY KI+IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYKKIVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  L+  G +YI  PPLY + +GK ++Y   E+  ++Y      S  ++ +
Sbjct: 420 FFRYMRELVEGGHVYIATPPLYLLKKGKKMRYAWSEKERDEYNAQMGGSASVQRY 474


>gi|148470276|gb|ABQ66085.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 249/421 (59%), Positives = 320/421 (76%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GTGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYQGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIG LITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGALITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|148971399|gb|ABR20237.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 250/421 (59%), Positives = 321/421 (76%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GTGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVQDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|62633148|gb|AAX89532.1| DNA gyrase subunit B [Halomonas sp. P9]
          Length = 418

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 316/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I   G ++E  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELKLTIWXAGQVFEQLYHHGVAD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G     +GT V F PS++ F   +F+YD L  RLRELSFLNS V I LID+RS 
Sbjct: 61  APLAVVGKTE-QSGTRVHFRPSAETFHNIEFHYDILAKRLRELSFLNSGVAIRLIDERSG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GG++AFV++L+ +K  L           D + +++AM+WND + EN+ C+
Sbjct: 120 KE--ELFHYEGGLKAFVNHLNTNKTVLNPVFHFNAEREDGVGVEVAMQWNDTFSENIFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR +  Y+E     KK K +  GDD REG T+++S+K+PD
Sbjct: 178 TNNIPQRDGGTHLAGFRAALTRSLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FS+QTK+KLVSSEV++ VE  +    S +L E P EAK IV K+LDA+  R+AAR+AR
Sbjct: 238 PKFSAQTKDKLVSSEVKTAVEQEMGRLFSDYLIEKPNEAKAIVNKMLDAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA LPGKLADC E+DP  SELFLVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 DMTRRKGALDIAGLPGKLADCQEKDPSLSELFLVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG++ F+ +KLRYH IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|9971359|dbj|BAB12486.1| DNA gyrase B subunit [Tenacibaculum maritimum]
          Length = 474

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 220/475 (46%), Positives = 302/475 (63%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + +EG I++  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGET-DFT 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMF 224
           GT VTFLP   IF     +NYDTL  RLREL++LN  + I+L DKR+ +        T  
Sbjct: 60  GTIVTFLPDKSIFQQTTEYNYDTLATRLRELAYLNKGITITLTDKRNKDDEGNDIMETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G+  FV YLD  ++ L    I ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 STEGLPEFVKYLDNTREQLTADVISMEGEKNGIPVEVAMIYNTSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y E S   K  K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTGTLKKYAENSGLLKNVKFEIAGDDFREGLTAIISVKVGEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTDYLEENPDDAKTIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSETDPASCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +      +++KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKLRYHKVVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  ++  G++YI  PPLY + +G+  +Y  D+   +        S  I+ +
Sbjct: 420 FFRYMKEMVEQGYIYIATPPLYLVKKGQKKEYAWDDNQRDLIAQKMGGSVNIQRY 474


>gi|121593432|ref|YP_985328.1| DNA topoisomerase IV subunit B [Acidovorax sp. JS42]
 gi|120605512|gb|ABM41252.1| DNA topoisomerase IV subunit B [Acidovorax sp. JS42]
          Length = 660

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 212/612 (34%), Positives = 305/612 (49%), Gaps = 38/612 (6%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +   S Y   SI++LKGL+ VK+RP MY   T  ++ L H+I EVLDNA DE+L G+   
Sbjct: 7   STSASDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HIIQEVLDNAADEALAGFGKK 62

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVSGGL 120
           I VTL+ DGS +V D+GRGIP  LH EE     E++ TRLHA     K    +Y  SGGL
Sbjct: 63  IKVTLHTDGSVSVEDDGRGIPFGLHPEENAPVVELVFTRLHAGGKFDKGKGGAYSFSGGL 122

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT----GSAGNDTGTEVTFL 176
           HGVGVSV NAL++ L++   REG +  + F  G +  PL V     G      GT V   
Sbjct: 123 HGVGVSVTNALATRLEVATHREGQVARLVFAGGDVTEPLAVRPLQAGERKQ--GTTVRVW 180

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P +  F   +     L H LR  + L   V + L+++++ + +      KGG+  +++  
Sbjct: 181 PDAKYFESSNLPMGELTHLLRSKAVLMPGVTVQLVNEKTRDTQTWQY--KGGLRDYLAQT 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
                 +          R N S          + + +        + N IP   GGTH S
Sbjct: 239 LSADPVIPLFEGEGFADRHNESFAEGEGAAWCVAFTEEGQPVRESYVNLIPTSAGGTHES 298

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR  L   + S++E           ++ +D     + VL+ K+ DP+F  Q KE+L S 
Sbjct: 299 GLRDGLFNAVKSFIELH-SLLPKGVKLLPEDVFARASYVLAAKVLDPQFQGQIKERLNSR 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           +   +V SFV   L  WL +H    K + +    A       ++A     ++    +A L
Sbjct: 358 DAVRLVSSFVRPALELWLNQHVEYGKKLAE---LAIKAAQTRQKAGQKVEKRKGSGVAVL 414

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL DC  RD   +E+FLVEGDSAGGSAK GR +E+QAILPLRGK+LN      D++ +
Sbjct: 415 PGKLTDCESRDLAYNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVDRDRLFA 474

Query: 471 SQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + E+  +  A+G      S   +   LRY KI I++DADVDG+HI+ LLLT FFR  P L
Sbjct: 475 NTEVHDISVAIGVDPHGPSDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKL 534

Query: 529 IHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----EEIELFCD 577
           I  G +++ +PPL+ +       +  +  Y  DE  LE  L   +       +       
Sbjct: 535 IEAGHIFVARPPLFRVDVPARGKKPAAKVYALDESELESILDKCAKDGVPREKCQISRFK 594

Query: 578 SKGVISKNDLRN 589
             G ++   L  
Sbjct: 595 GLGEMNAEQLWE 606



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 723 LDTIFSI-GRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
           L++I     + G+      + R+KGLGEMNA QLWETTLNPDTR LL V++   D S  +
Sbjct: 571 LESILDKCAKDGVPREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGTFDFSATE 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            L ++LMG  E   RRE ++ +     +DI
Sbjct: 631 GLITKLMGKGEAAARRELMELHGDLVDVDI 660


>gi|9971341|dbj|BAB12477.1| DNA gyrase B subunit [Persicobacter diffluens]
          Length = 477

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 229/459 (49%), Positives = 314/459 (68%), Gaps = 10/459 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGND 168
           ++ +YKVSGGLHGVGVS VNALS  +K+ +  ++G IYE S+  G    P+   G   + 
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMF 224
           TGT V F+P  +IF+  ++ +D + +RLREL+FLN+ + I L D R  + +      T +
Sbjct: 60  TGTTVWFMPDDEIFTHHEYVWDRVANRLRELAFLNAGITIVLEDLRDVDEQGNPLSETFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            +GGI+ FV YLD  K+ L+   + I+G + NI + +AM +N  + ENV+ + NNI   +
Sbjct: 120 SEGGIKEFVEYLDDSKEKLIDEAVYIEGEKANIPVQVAMSYNTSFSENVVSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH+SG R ALTR + +Y +KS    K K  + GDD REG T+V+S+K+ +P+F  QTK
Sbjct: 180 GGTHVSGFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +S+    V+S V+D L+ +LEE+P  AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNSDAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMVQRKNV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +   SLPGKLADCS +D   SEL+LVEGDSAGGSAKQGR RE QAILPLRGKILNVE+A+
Sbjct: 300 MSSTSLPGKLADCSSKDAALSELYLVEGDSAGGSAKQGREREYQAILPLRGKILNVEKAQ 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  +ITA+G   G+D      D+ KLRYHKI+IMTDADVDG+HIRTL+LTF
Sbjct: 360 EHKIYDNEEIKNMITAMGVRFGKDGDEKALDMEKLRYHKIVIMTDADVDGSHIRTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           FFR M  LI NG++YI +PPLY + +G   +Y   EE  
Sbjct: 420 FFRYMRDLIDNGYVYIAQPPLYQVKKGAKQKYCWTEEDR 458


>gi|2905604|gb|AAC03527.1| gyrase subunit B [Shewanella oneidensis]
          Length = 418

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 247/414 (59%), Positives = 321/414 (77%), Gaps = 4/414 (0%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G+ D 
Sbjct: 3   IIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDA 62

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           P+   G A   TGTE+ F PS   FS  +F+++ L  R+RELSFLNS V I L+D+R  +
Sbjct: 63  PIKEIGDAT-KTGTEIRFWPSEQTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNK 121

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCF 276
                  Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ CF
Sbjct: 122 N--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFCF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PD
Sbjct: 180 TNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA   R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAPRAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 300 EMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG
Sbjct: 360 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKNRYHNIIIMTDADVDG 413


>gi|148470176|gb|ABQ66036.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 250/421 (59%), Positives = 321/421 (76%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GTGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|148971415|gb|ABR20245.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 249/421 (59%), Positives = 320/421 (76%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GTGTTVHFWPDPEVFESTEFSFARLEERFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G R  + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRXGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|9971367|dbj|BAB12490.1| DNA gyrase B subunit [Tenacibaculum ovolyticum]
          Length = 474

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 215/475 (45%), Positives = 308/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + +EG +++  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVHKEGKVWQQEYEKGKALYPVKTIGET-DFT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTFLP   IF    ++NYDTL  RLREL++LN  + I+L DKR+ +      + T  
Sbjct: 60  GTIVTFLPDKSIFAQTTEYNYDTLSARLRELAYLNKGITITLTDKRNTDDEGNYIQETFR 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G+  F+ YLD  ++ L  + I ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 STEGLPEFIKYLDSTREQLTANVISMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y ++S   K  K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADESGLLKNVKFEIAGDDFREGLTAIISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +      +++K+RYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKIRYHKVVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  ++  G++YI  PPLY + +G+  +Y  D+   +       ++  I+ +
Sbjct: 420 FFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDNQRDLIAQKLGVNVNIQRY 474


>gi|2196808|gb|AAB80821.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 252/422 (59%), Positives = 321/422 (76%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV+YL R K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVNYLKRRKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSE+++ VE  + + L+ +L E+P EAK+IV K+++A+  R+AA + 
Sbjct: 238 DPKFSSQTKDKLVSSELKTAVEQTMGEKLNDYLLENPAEAKLIVGKIVEAARAREAAGKV 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+ TRRKG LD+  LPGKLADC E+DP  SE+ +VEGDSAGGSAKQGR+R+NQAI PL+G
Sbjct: 298 REKTRRKGALDLGGLPGKLADCQEKDPGLSEINIVEGDSAGGSAKQGRNRKNQAIPPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG D ++ +K RYH IIIMTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGADEYNPDKTRYHNIIIMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|148470278|gb|ABQ66086.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 249/420 (59%), Positives = 319/420 (75%), Gaps = 1/420 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGT V F P  ++F   +F++  L+ R REL++LN    I L D+R  
Sbjct: 61  APIAAKGPAK-GTGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGSTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYLYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419


>gi|119369966|gb|ABL67997.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 255/421 (60%), Positives = 323/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQT+EKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTEEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++II+TDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIITDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|71898809|ref|ZP_00680977.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa Ann-1]
 gi|71731395|gb|EAO33458.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa Ann-1]
          Length = 458

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 190/463 (41%), Positives = 262/463 (56%), Gaps = 11/463 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           NS Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L GYA+ I V
Sbjct: 2   NSRYNAADIEVLTGLDPVKRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGYANRIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DGSC V+DNGRG+P D+H EE I   E+I+TRLHAGGKF+ ++Y  SGGLHGVGVS
Sbjct: 58  TLYKDGSCEVADNGRGMPVDIHPEEKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ 185
           VVNALSS + L IKREG+ + M F  G   + L V G+ +  +TGT + F P S  F   
Sbjct: 118 VVNALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN   L+H LR  + L   + + L+++ + E        K G+  ++       + L  
Sbjct: 178 KFNVRVLRHLLRAKAVLCPGLTVELLEEATGEINTWHF--KDGLRDYLKGEMTESELLPA 235

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D   +D A+ W          + N IP    GTH++GLRS LT  +  + +
Sbjct: 236 ELFIGCLKKDTEVVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDALREFCD 295

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +ES V+D  S
Sbjct: 296 FRNLLPRG-IKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTVHDAFS 354

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WL ++    + I +  ++ +  R           RK +    +LPGKLADC   D  ++
Sbjct: 355 LWLNQNVDIGEHIAQIAIERASARLKTE---KQVTRKKITHGPALPGKLADCISLDLSRT 411

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           ELFLVEGDSAGGSAKQ R ++ QAILPLRGKILN       + 
Sbjct: 412 ELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGQR 454


>gi|88824775|gb|ABD52433.1| gyrase B [Pseudomonas putida]
          Length = 419

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 244/419 (58%), Positives = 321/419 (76%), Gaps = 4/419 (0%)

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P
Sbjct: 4   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAP 63

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + V G +   TGT + F PS++ F    F++D L  R+RELSFLNS V I L D+RS + 
Sbjct: 64  MAVVGESE-TTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE 122

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFT 277
                 Y+GG+ AFV YL+ +K P+          R++ + +++A++WND ++EN+LCFT
Sbjct: 123 --EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFSVQREDGVGVEVALQWNDSFNENLLCFT 180

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL G RS+LTR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP
Sbjct: 181 NNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDP 240

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK++LVSSEV++ VE  +N   S +L E+P EAK +V K++DA+  R+AAR+AR+
Sbjct: 241 KFSSQTKDRLVSSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKARE 300

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKI
Sbjct: 301 MTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKI 360

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           LNVE+ARFDKM+SSQE+GTLITALG GIG++ ++I+KLRYH IIIMTDADVDG+H    
Sbjct: 361 LNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHTVPC 419


>gi|119369962|gb|ABL67995.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 249/421 (59%), Positives = 318/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GRGTTVLFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA+LPGKLADC E+D    E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DLTRRKGALDIANLPGKLADCQEKDLALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|262272990|gb|ACY40690.1| DNA gyrase subunit beta [Xanthomonas campestris pv.
           mangiferaeindicae]
 gi|262272992|gb|ACY40691.1| DNA gyrase subunit beta [Xanthomonas campestris pv.
           mangiferaeindicae]
 gi|262272996|gb|ACY40693.1| DNA gyrase subunit beta [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 419

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 259/421 (61%), Positives = 322/421 (76%), Gaps = 2/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL     A    GT + F PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  
Sbjct: 61  YPLKQL-EASTKRGTTLRFKPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-G 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E R     Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CF
Sbjct: 119 EGRRDDFHYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R+ALTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PD
Sbjct: 179 TNNIPQKDGGTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P FSSQTKEKLVSS+VR  VE+     L  +L+E+P EAK I  K++DA+  R+AAR+AR
Sbjct: 239 PSFSSQTKEKLVSSDVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGK
Sbjct: 299 DLTRRKGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML+S ++GTLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTL
Sbjct: 359 ILNVERARFDRMLASDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTL 418

Query: 517 L 517
           L
Sbjct: 419 L 419


>gi|262272994|gb|ACY40692.1| DNA gyrase subunit beta [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 419

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 259/421 (61%), Positives = 322/421 (76%), Gaps = 2/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL     A    GT + F PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  
Sbjct: 61  YPLKQL-EASTKCGTTLRFKPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-G 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E R     Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CF
Sbjct: 119 EGRRDDFHYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R+ALTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PD
Sbjct: 179 TNNIPQKDGGTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P FSSQTKEKLVSS+VR  VE+     L  +L+E+P EAK I  K++DA+  R+AAR+AR
Sbjct: 239 PSFSSQTKEKLVSSDVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGK
Sbjct: 299 DLTRRKGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML+S ++GTLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTL
Sbjct: 359 ILNVERARFDRMLASDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTL 418

Query: 517 L 517
           L
Sbjct: 419 L 419


>gi|160900517|ref|YP_001566099.1| DNA topoisomerase IV subunit B [Delftia acidovorans SPH-1]
 gi|160366101|gb|ABX37714.1| DNA topoisomerase (ATP-hydrolyzing) [Delftia acidovorans SPH-1]
          Length = 660

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 200/590 (33%), Positives = 301/590 (51%), Gaps = 27/590 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S Y   SI++LKGL+ VK+RP MY   T  ++ LH +  EV+DNA DE+L G+   I
Sbjct: 8   TSASEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHVL-QEVIDNAADEALAGFGKKI 63

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVSGGLH 121
             TL+ DGS +V D+GRGIP  +H EE     E++ TRLHA     K    +Y  SGGLH
Sbjct: 64  RFTLHSDGSYSVEDDGRGIPFGMHPEEKAPVVELVFTRLHAGGKFDKGKGGAYSFSGGLH 123

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTEVTFLPSS 179
           GVGVSV NAL++ L+  I REG +  ++F  G +  PL     A  +   GT V   P +
Sbjct: 124 GVGVSVTNALATRLEACIHREGKVATIAFSGGDVVEPLQSRPLAAGERKQGTTVRVWPDA 183

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F         L H LR  + L   V ++L+++++ + +      KGG+  ++      
Sbjct: 184 RYFESPQLPMGELMHLLRSKAVLMPGVSVTLVNEKTRDTQTWQF--KGGLRDYLQQSLHG 241

Query: 240 KKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +  +          R + S          + + +        + N IP   GGTH SGLR
Sbjct: 242 EAVIPLFEGEGFADRHHDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGTHDSGLR 301

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L + + +++E           ++ DD     + VL+ K+ DP+F  Q KE+L S +  
Sbjct: 302 DGLFQAVKAFIEMH-SLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLNSRDAV 360

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V  +V   L  WL EH    + + +  + A+  R  A +      ++    +A LPGK
Sbjct: 361 RLVSGYVRPALELWLNEHVEWGRKLAEIAIKAAQTRQKAGQK---VEKRKGSGVAVLPGK 417

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC  RD   +E+FLVEGDSAGGSAK GR++E QA+LPLRGK+LN      D++ ++ E
Sbjct: 418 LTDCESRDLSLNEVFLVEGDSAGGSAKMGRNKETQAVLPLRGKVLNTWEVDRDRLFANNE 477

Query: 474 IGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           I  +  A+G      +   +   LRY K+ I++DADVDG+HI+ LLLT FFR  P LI  
Sbjct: 478 IHDISVAIGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPKLIEA 537

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           G +++  PPL+ +      +    + + + Y +++     I       GV
Sbjct: 538 GHIHVALPPLFRVDVPARGK----KPAAKMYALDEGELTAILDKSAKDGV 583



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 8/91 (8%)

Query: 721 SLLDTIFSIGRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVK-IT-DASQA 773
            L   +    + G+      + R+KGLGEMNA QLWETTLNPDTR LL V+ +  D + A
Sbjct: 570 ELTAILDKSAKDGVPREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQFMNLDFAAA 629

Query: 774 DDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
           + + ++LMG  E   RRE ++ +     +DI
Sbjct: 630 EQVVTKLMGKGEAAARRELMELHGDAIEVDI 660


>gi|148470244|gb|ABQ66069.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 250/421 (59%), Positives = 321/421 (76%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTRLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GTGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|13517061|dbj|BAB40413.1| DNA gyrase B subunit [Cytophaga sp. MBIC01484]
          Length = 474

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 216/463 (46%), Positives = 301/463 (65%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + R+G I++  +  G    P+   G    + 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETE-ER 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GTEVTF P + IF+    ++Y+TL +R+RELSFLN  V IS+ DKR      E    T F
Sbjct: 60  GTEVTFHPDNTIFTQTIEYSYETLANRMRELSFLNKGVTISITDKRQKDEKGEFVSETFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ FV +LD +++ L+Q  I ++G +++I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SNEGLKEFVKFLDGNRESLIQGVIAMEGEKNDIPVEVAMIYNTSYTENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLPGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA +AR++ +RK V
Sbjct: 240 TKLGNREVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCSE+DP+K E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSGGGLPGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNMYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  L+  G +YI  PPLY + +G+  QY   ++  ++  
Sbjct: 420 FFRYMRELVEQGHIYIATPPLYLVKKGQKKQYAWSDKERDEIA 462


>gi|13516981|dbj|BAB40373.1| DNA gyrase B subunit [Persicobacter diffluens]
 gi|13516983|dbj|BAB40374.1| DNA gyrase B subunit [Persicobacter diffluens]
          Length = 477

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 229/459 (49%), Positives = 314/459 (68%), Gaps = 10/459 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGND 168
           ++ +YKVSGGLHGVGVS VNALS  +K+ +  ++G IYE S+  G    P+   G   + 
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMF 224
           TGT V F+P  +IF+  ++ +D + +RLREL+FLN+ + I L D R  + +      T +
Sbjct: 60  TGTTVWFMPDDEIFTHHEYVWDRVANRLRELAFLNAGITIILEDLRDVDEQGNPLSETFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            +GGI+ FV YLD  K+ L+   + I+G + NI + +AM +N  + ENV+ + NNI   +
Sbjct: 120 SEGGIKEFVEYLDDSKEKLIDEAVYIEGEKANIPVQVAMSYNTSFSENVVSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH+SG R ALTR + +Y +KS    K K  + GDD REG T+V+S+K+ +P+F  QTK
Sbjct: 180 GGTHVSGFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +S+    V+S V+D L+ +LEE+P  AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNSDAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMVQRKNV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +   SLPGKLADCS +D   SEL+LVEGDSAGGSAKQGR RE QAILPLRGKILNVE+A+
Sbjct: 300 MSSTSLPGKLADCSSKDATISELYLVEGDSAGGSAKQGREREYQAILPLRGKILNVEKAQ 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  +ITA+G   G+D      D+ KLRYHKI+IMTDADVDG+HIRTL+LTF
Sbjct: 360 EHKIYDNEEIKNMITAMGVRFGKDGDEKALDMEKLRYHKIVIMTDADVDGSHIRTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           FFR M  LI NG++YI +PPLY + +G   +Y   EE  
Sbjct: 420 FFRYMRDLIDNGYVYIAQPPLYQVKKGAKQKYCWTEEDR 458


>gi|296504102|ref|YP_003665802.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis BMB171]
 gi|296325154|gb|ADH08082.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis BMB171]
          Length = 575

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 225/581 (38%), Positives = 340/581 (58%), Gaps = 17/581 (2%)

Query: 83  IPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
           +PT +H + G    EVI+T LHAGGKF Q  YK SGGLHGVG SVVNALS WL + IKR+
Sbjct: 1   MPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVVTIKRD 59

Query: 143 GNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           GNIYE  F N G+    L   G    ++GT + F P + IFS  ++NY+TL  RLRE +F
Sbjct: 60  GNIYEQRFENGGVPATTLEKIGKTK-ESGTTMHFKPDTTIFSTTNYNYETLCERLRESAF 118

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           L   ++IS+ D+R+    E    Y+ GIEAFVSYL+  K  +    +   G ++ I  +L
Sbjct: 119 LLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEEKDSIHP-VVYFTGEQNGIEAEL 175

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A ++NDGY EN+L F NN+  KDGGTH +G ++A+TR    Y  K    K+  +++ G D
Sbjct: 176 AFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALLKEKDKNLEGTD 235

Query: 322 CREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
            REG  +++S+++P+   +F  QTK KL +SE RS +++ V++ L+ +LEE+P  A ++V
Sbjct: 236 IREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFLEENPDVATLLV 295

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +K + A+  R+AAR+AR+  R       +  +L GKL     R+P+K+EL+LVEGDSAGG
Sbjct: 296 RKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLTPAQSRNPQKNELYLVEGDSAGG 355

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           SAKQGR R  QA+LPLRGK++N E+A+   +  ++EI T+I A+G G+G + FD+  + Y
Sbjct: 356 SAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVGNE-FDVEDINY 414

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYV 553
            K++IMTDAD DGAHI+ LLLTFF+R M  LI  G ++I  PPLY ++    + + ++Y 
Sbjct: 415 DKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYA 474

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK--IDKLIKDFYPNHDKT 611
             +E L+           ++ +     + +       ++   +  I   I D      + 
Sbjct: 475 WSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRV 534

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652
                          ++ +   +  +     N +  ++E  
Sbjct: 535 TTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMETEVE 575



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           V N E  +  ++    ++   +  I       +     N D +V           +    
Sbjct: 375 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 434

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737
             F +      I + ++      +  +     K ++         LD +     KG  +Q
Sbjct: 435 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 494

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+   + LMGD+VEPRR++I+ N
Sbjct: 495 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 552


>gi|9971363|dbj|BAB12488.1| DNA gyrase B subunit [Tenacibaculum ovolyticum]
 gi|9971365|dbj|BAB12489.1| DNA gyrase B subunit [Tenacibaculum ovolyticum]
          Length = 474

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 215/475 (45%), Positives = 307/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + +EG +++  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVHKEGKVWQQEYEKGKALYPVKTIGET-DFT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTFLP   IF    ++NYDTL  RLREL++LN  + I+L DKR+ +      + T  
Sbjct: 60  GTIVTFLPDKSIFAQTTEYNYDTLSARLRELAYLNKGITITLTDKRNTDDEGNYIQETFR 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G+  F+ YLD  ++ L  + I ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 STEGLPEFIKYLDSTREQLTANVISMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y ++S   K  K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKYADESGLLKNVKFEIAGDDFREGLTAIISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +      +++K+RYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKIRYHKVVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  ++  G++YI  PPLY + +G+  +Y  D+   +        +  I+ +
Sbjct: 420 FFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDNQRDLIAQKLGGNVNIQRY 474


>gi|2353020|gb|AAB92595.1| gyrase beta subunit [Shewanella frigidimarina]
          Length = 419

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 252/422 (59%), Positives = 324/422 (76%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLQLTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PSSD F+  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDA-VKTGTELRFWPSSDTFTDVEFHFEILAKRVRELSFLNSGVGIRLVDERDG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           E       Y+ GI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 ED--EFFKYESGISAFVDYLNRNKTPINKDVFHFSHEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+E+   +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  + + L+ +L E+P + K+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQTMGEQLNDYLLENPADVKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
            + TRRKG LD+   PGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+NQAILPL+G
Sbjct: 298 CEKTRRKGALDLGGPPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|13517053|dbj|BAB40409.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04478]
          Length = 474

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 220/475 (46%), Positives = 303/475 (63%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG ++E  +  G    P+  TG   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVFREGKVWEQEYERGKTLYPVKSTG-TTDQR 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMF 224
           GT VTF P   IF+   ++NYDTL  RLREL+FLN  + I++ D+R  +        T  
Sbjct: 60  GTTVTFKPDPIIFTQVLEYNYDTLASRLRELAFLNKGITITITDRRHKDEEGNEISETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ F+ YLD  ++P++   I ++G ++   +++AM +N  Y EN+  + NNI   +
Sbjct: 120 STEGLKEFIKYLDDTREPIIADVISMEGEKNGTPVEVAMIYNTSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTTTLKKYADASGMLDKLKFDISGDDFREGLTAIVSVKVSEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L  +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLENYLEENPQDAKTIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCSE+DP+K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSGGGLPGKLSDCSEQDPEKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHKI+IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIRNIFTALGVTIGTEEDSKALNLEKLRYHKIVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY + +G    Y  D++  +  + +   S  I+ +
Sbjct: 420 FFRYMRDLIEAGHVYIATPPLYLVKKGAKKSYAWDDKERDGIVESFGGSATIQRY 474


>gi|148971405|gb|ABR20240.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 248/421 (58%), Positives = 319/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAT-ARGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYQGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIG LITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGALITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|83700332|gb|ABC41014.1| DNA gyrase subunit B [Phenylobacterium zucineum]
          Length = 425

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 292/425 (68%), Positives = 342/425 (80%), Gaps = 6/425 (1%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           VIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS +LKL++ R G  +EM F  G    
Sbjct: 1   VIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDFLKLKVFRGGMQHEMEFRRGDAVA 60

Query: 158 PLVVTGSAG------NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           PL VTG A         TGT VTFLPS+  F   +F+  TL+HRLREL+FLNS V I L 
Sbjct: 61  PLAVTGKAPLRDNGEFLTGTHVTFLPSTATFRFIEFDLKTLEHRLRELAFLNSGVTIWLK 120

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D R  EP E  M Y+GGIEAFV +LD+ K PLM+ PI ++G +D + +D+A+ WNDGYHE
Sbjct: 121 DLRGAEPFEEVMHYEGGIEAFVRHLDKAKHPLMKEPIVVRGRKDTVEVDMALWWNDGYHE 180

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+  RSALTR IT+Y E+S  +K++K SV G+D REG T VLS
Sbjct: 181 NVLCFTNNIPQRDGGTHLAAFRSALTRIITNYAEQSGAAKREKVSVSGEDAREGLTCVLS 240

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+PDP+FSSQTK+KLVSSEVR  VE  V++GLS W EEHP EAK+IV+K+ +A+  R+A
Sbjct: 241 VKVPDPKFSSQTKDKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKLIVQKITEAAAAREA 300

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR+LTRRK  LDI SLPGKLADC E+DP KSELFLVEGDSAGGSAKQ R+RENQAIL
Sbjct: 301 ARKARELTRRKSALDITSLPGKLADCQEKDPAKSELFLVEGDSAGGSAKQARNRENQAIL 360

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGKILNVERARFDKMLSS ++GTLITALG GIG+D FDI KLRYHKI+IMTDADVDGA
Sbjct: 361 PLRGKILNVERARFDKMLSSDQVGTLITALGAGIGRDDFDIEKLRYHKIVIMTDADVDGA 420

Query: 512 HIRTL 516
           HIRTL
Sbjct: 421 HIRTL 425


>gi|47155274|emb|CAG28941.1| gyraseB [Shewanella piezotolerans WP3]
 gi|86604465|emb|CAJ76130.1| DNA gyrase B subunit [Shewanella piezotolerans WP3]
          Length = 419

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 253/421 (60%), Positives = 323/421 (76%), Gaps = 4/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G  YE  +  G  +
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSHKLQLTIRRDGKAYEQFYTMGEPN 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGT + F PS + FS   F++D L  R+RELSFLNS V I L+D+R  
Sbjct: 61  EPIKPVGEAT-STGTVIRFWPSEETFSDVLFHFDILAKRVRELSFLNSGVGIRLVDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           + R+    Y+GGI AFV YL+ +K P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 118 DNRDEFFKYEGGISAFVDYLNVNKTPVNKEVFHFIQEREDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+E+   +KK K    GDD REG T+ +S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTGATGDDAREGLTAAISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  + + L  +L EHP EAK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D +K RYH I+IMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRT 417

Query: 516 L 516
           L
Sbjct: 418 L 418


>gi|9971361|dbj|BAB12487.1| DNA gyrase B subunit [Tenacibaculum maritimum]
          Length = 474

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 220/475 (46%), Positives = 302/475 (63%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + +EG I++  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGET-DFT 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMF 224
           GT VTFLP   IF     +NYDTL  RLREL++LN  + I+L DKR+ +        T  
Sbjct: 60  GTIVTFLPDKSIFQQTTEYNYDTLATRLRELAYLNKGITITLTDKRNKDDEGNDIMETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G+  FV YLD  ++ L    I ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 STEGLPEFVKYLDNTREQLTAGVISMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y E S   K  K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTGTLKKYAENSGLLKNVKFEIAGDDFREGLTAIISVKVGEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTDYLEENPDDAKTIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSETDPASCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +      +++KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKLRYHKVVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  ++  G++YI  PPLY + +G+  +Y  D+   +        S  I+ +
Sbjct: 420 FFRYMKEMVEQGYIYIATPPLYLVKKGQKKEYAWDDNQRDLIAQKMGGSVNIQRY 474


>gi|9971369|dbj|BAB12491.1| DNA gyrase B subunit [Flexibacter litoralis]
          Length = 483

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 221/470 (47%), Positives = 313/470 (66%), Gaps = 15/470 (3%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS  L++ + R G I+E  +  G     +   G   + +
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSDHLRVEVHRNGKIFEQEYSCGAPKYSVREIG-TTDVS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------SPEPREI 221
           GT+VTF P + IF+   F Y+T+ +RLRELS+LN+ V+I+L D+R        +      
Sbjct: 60  GTQVTFHPDATIFTHSVFKYETVANRLRELSYLNAGVKITLSDQRKEFGDKDENGNFVTE 119

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T   +GG+  FV +LD+ +  ++ + I ++G ++++ + +A+ +N  Y ENV  + NNI 
Sbjct: 120 TFLSEGGLREFVEFLDKSRTAIIPNAIYVEGDKNDVPVQVAILYNTSYSENVFSYVNNIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH++G   ALTR + SY +K+      K  + G D REG T+V+S+K+ +P+F  
Sbjct: 180 TIEGGTHITGFYRALTRVLKSYADKNG-LTDKKVELSGGDFREGMTAVISVKVMEPQFEG 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SEV   VES V D L  +LEE+P EAKII++KV  A+  R AAR+AR++ +R
Sbjct: 239 QTKTKLGNSEVSGAVESCVADALYNYLEENPKEAKIIIQKVTLAAQARMAARKAREMVQR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  L    LPGKLADCSE+DP+K E++LVEGDSAGGSAKQGR R++QAILPLRGKILNVE
Sbjct: 299 KTALSGTGLPGKLADCSEKDPEKCEIYLVEGDSAGGSAKQGRDRQSQAILPLRGKILNVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTL 516
           +A+  ++  ++EI  +ITALG   G++       +++KLRYHKI+IMTDADVDG+HIRTL
Sbjct: 359 KAQEHRIYDNEEIKNIITALGIRFGENEQGEKYLNLDKLRYHKIVIMTDADVDGSHIRTL 418

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           +LT FFR M  L+  G++YI +PPLY I +GK   Y  DE   E  +   
Sbjct: 419 ILTLFFRYMKDLVEKGYVYIAQPPLYLIKKGKQKIYCWDEPQREQAMREL 468


>gi|56409816|emb|CAH65717.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 253/423 (59%), Positives = 323/423 (76%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH GGKF+  SYKVSGGLHGVG SVVNALS  ++L IKREG I++  + +G+  
Sbjct: 1   EVIMTVLHGGGKFDDNSYKVSGGLHGVGASVVNALSEKVELTIKREGEIFQQIYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G    +TGT + F PS + F+  +F+Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGKTE-ETGTRIRFWPSEETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDEREE 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           +  +  M ++GGI A V +L+R+K P+ Q           D I++++AM+WNDG+   V 
Sbjct: 120 DKXDXXM-FEGGIRAXVEHLNRNKTPIHQKIFYFDHTREEDGITVEVAMQWNDGFQXGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD+TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+
Sbjct: 299 ARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRXRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ RFDKMLSSQE+ TLITALG GIG+D  + +KLRYH IIIM DADVDG+HIR
Sbjct: 359 GKILNVEKXRFDKMLSSQEVATLITALGCGIGRDEXNPDKLRYHNIIIMADADVDGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|119369988|gb|ABL68008.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 248/421 (58%), Positives = 318/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT V F P  ++F   +F++   + R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GRGTTVHFWPDPEVFESTEFSFARQEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+III+TDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIITDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|120610027|ref|YP_969705.1| DNA topoisomerase IV subunit B [Acidovorax citrulli AAC00-1]
 gi|120588491|gb|ABM31931.1| DNA topoisomerase IV subunit B [Acidovorax citrulli AAC00-1]
          Length = 660

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 215/628 (34%), Positives = 303/628 (48%), Gaps = 32/628 (5%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M+    +   S Y   SI++LKGL+ VK+RP MY   T  ++ L H+I EVLDNA DE+L
Sbjct: 1   MAAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HIIQEVLDNAADEAL 56

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSY 114
            G+   I VTL  DGS  + D+GRGIP  LH EE     E++ TRLHA     K    +Y
Sbjct: 57  AGHGKRIKVTLFADGSVGIEDDGRGIPFGLHPEEKAPVIELVFTRLHAGGKFDKGKGGAY 116

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTE 172
             SGGLHGVGVSV NAL+  L+    R+G I  + F  G +  PL     A  +   GT 
Sbjct: 117 SFSGGLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEPLTARPLAAGERRQGTT 176

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V   P    F         L H LR  + L   V +SL+++++ E +      KGG+  +
Sbjct: 177 VRVWPDGRYFESTALPMGELVHLLRSKAVLMPGVTVSLVNEKTKETQTWQY--KGGLRDY 234

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGG 286
           +         +          R N S          + + D        + N IP   GG
Sbjct: 235 LGQSLPADPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIPTSAGG 294

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH +GLR  L + + S++E           ++ +D     + VLS K+ DP+F  Q KEK
Sbjct: 295 THDAGLRDGLFQAVKSFIELH-SLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQVKEK 353

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L S +   +V S+V   L  WL +H    + + +    A       ++A     +K    
Sbjct: 354 LNSRDAVRLVSSYVRPALELWLHQHVDYGRKLAE---LAIKAAQTRQKAGQKVEKKKGSG 410

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +A LPGKL DC  RD   +E+FLVEGDSAGGSAK GR +E QA+LPLRGK+LN      D
Sbjct: 411 VAVLPGKLTDCESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEVDRD 470

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           ++ ++ EI  +  ALG      +   +   LRY K+ I++DADVDG+HI+ LLLT FFR 
Sbjct: 471 RLFANTEIHDISVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRH 530

Query: 525 MPSLIHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
            P LI  G +Y+ +PPLY +       +  S  Y  D+  LE  L   +        C  
Sbjct: 531 FPKLIEAGHIYVARPPLYRVDVPARGKKPASKVYALDDGELEAILDKCAKDGVAREKCQI 590

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYP 606
                  ++         ++   +   P
Sbjct: 591 SRFKGLGEMNAEQLWETTLNPDTRRLLP 618



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 723 LDTIFSI-GRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQAD 774
           L+ I     + G+      + R+KGLGEMNA QLWETTLNPDTR LL V++ D   ++ +
Sbjct: 571 LEAILDKCAKDGVAREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGDLGFAETE 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            L ++LMG  E   RRE ++ +     +DI
Sbjct: 631 GLITKLMGKGEAAARRELMELHGDAVEVDI 660


>gi|262189964|ref|ZP_06048273.1| DNA gyrase subunit B [Vibrio cholerae CT 5369-93]
 gi|262034149|gb|EEY52580.1| DNA gyrase subunit B [Vibrio cholerae CT 5369-93]
          Length = 344

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/344 (37%), Positives = 191/344 (55%), Gaps = 8/344 (2%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           MLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP 
Sbjct: 1   MLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPE 60

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G++YI +PPLY + +GK  QY+KDEE++  Y +  ++             ++   L
Sbjct: 61  LIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPL 120

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFI 645
              +       KL++     +    + + +     N E  +D+    +   +L  +LN  
Sbjct: 121 EKLVQQYNAAIKLVERMSRRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAK 180

Query: 646 AEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
              + +       +  +N     ++    GV  +++L    I S         S  ++  
Sbjct: 181 EVGASQYSVLVEHNAELNVYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGL 240

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
                 +        I+   + LD +    R+G+S+QRYKGLGEMN  QLWETT++P+TR
Sbjct: 241 IEAGAFIKRGERVQPISSFAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETR 300

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            +++V I DA  AD+LF+ LMGD+VEPRR FI+ N+L    LD+
Sbjct: 301 RMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNALKVANLDV 344


>gi|13517043|dbj|BAB40404.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04473]
          Length = 474

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 213/475 (44%), Positives = 303/475 (63%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + ++G I+E  +  G    P+   G   + +
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKASVHKDGKIWEQEYERGKPLYPVKAVGDT-DFS 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF P + IF     +NY+TL  R+REL+FLN  + I+L DKR      E      F
Sbjct: 60  GTVVTFHPDNQIFQQTIEYNYETLASRMRELAFLNKGLTITLTDKRQTDDKGEFISERFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G+  FV +LD ++ P+++  I ++G ++ + +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLSEFVRFLDGNRDPIIKDVISMEGEKNGVPVEVAMIYNSSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LT  +  + + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTSSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ +   +EE+P +AK I++KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMIEIHMEENPNDAKTIIEKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCS +DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSNQDPAECEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHKI+IM DADVDG+HI TL+LTF
Sbjct: 360 SHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY I +G+  +Y  +E+  E        S  ++ +
Sbjct: 420 FFRYMKELIEAGHIYIATPPLYLIKKGQKKRYAWNEDEREAIANEFKGSVSVQRY 474


>gi|2196812|gb|AAB80823.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 254/422 (60%), Positives = 325/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+ V K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLFVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSA GSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSACGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG D ++ +K RYH IIIMTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGADEYNPDKTRYHNIIIMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|215254256|gb|ACJ64127.1| DNA gyrase subunit B [Vibrio agarivorans]
          Length = 418

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 252/415 (60%), Positives = 319/415 (76%), Gaps = 3/415 (0%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    
Sbjct: 1   VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQA 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           PL V G   + TGTE+ F PS + FS  +F+YD L  RLRELSFLNS V I L D+R  E
Sbjct: 61  PLGVIGDT-DKTGTEIRFWPSEETFSNTEFHYDILAKRLRELSFLNSGVSIKLRDER-EE 118

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCF 276
            +     Y+GGI+AFV +L+ +K P+++        R++ I++++AM+WNDGY EN+ CF
Sbjct: 119 DKGDHFMYEGGIQAFVEHLNTNKTPIIEKVFHFNSEREDGIAVEVAMQWNDGYQENIYCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PD
Sbjct: 179 TNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+S VES + + LS +L EHP EAK +  K++DA+  RDAAR+AR
Sbjct: 239 PKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIEHPAEAKTVCTKIIDAARARDAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 299 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDAD    
Sbjct: 359 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADATAR 413


>gi|222110142|ref|YP_002552406.1| DNA topoisomerase iv subunit b [Acidovorax ebreus TPSY]
 gi|221729586|gb|ACM32406.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax ebreus TPSY]
          Length = 660

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 211/612 (34%), Positives = 304/612 (49%), Gaps = 38/612 (6%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           +   S Y   SI++LKGL+ VK+RP MY   T  ++ L H+I EVLDNA DE+L G+   
Sbjct: 7   STSASDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HIIQEVLDNAADEALAGFGKK 62

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVSGGL 120
           I VTL+ DGS +V D+GRGIP  LH EE     E++ TRLHA     K    +Y  SGGL
Sbjct: 63  IKVTLHTDGSVSVEDDGRGIPFGLHPEENAPVVELVFTRLHAGGKFDKGKGGAYSFSGGL 122

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT----GSAGNDTGTEVTFL 176
           HGVGVSV NAL++ L++   REG +  + F  G +  PL       G      GT V   
Sbjct: 123 HGVGVSVTNALATRLEVATHREGQVARLVFAGGDVTEPLAARPLQAGERKQ--GTTVRVW 180

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P +  F   +     L H LR  + L   V + L+++++ + +      KGG+  +++  
Sbjct: 181 PDAKYFESSNLPMGELTHLLRSKAVLMPGVTVQLVNEKTRDTQTWQY--KGGLRDYLAQT 238

Query: 237 DRHKKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
                 +          R N S          + + +        + N IP   GGTH S
Sbjct: 239 LSADPVIPLFEGEGFADRHNESFAEGEGAAWCVAFTEEGQPVRESYVNLIPTSAGGTHES 298

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR  L   + S++E           ++ +D     + VL+ K+ DP+F  Q KE+L S 
Sbjct: 299 GLRDGLFNAVKSFIELH-SLLPKGVKLLPEDVFARASYVLAAKVLDPQFQGQIKERLNSR 357

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           +   +V SFV   L  WL +H    K + +    A       ++A     ++    +A L
Sbjct: 358 DAVRLVSSFVRPALELWLNQHVEYGKKLAE---LAIKAAQTRQKAGQKVEKRKGSGVAVL 414

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL DC  RD   +E+FLVEGDSAGGSAK GR +E+QAILPLRGK+LN      D++ +
Sbjct: 415 PGKLTDCESRDLAYNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVDRDRLFA 474

Query: 471 SQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + E+  +  A+G      S   +   LRY KI I++DADVDG+HI+ LLLT FFR  P L
Sbjct: 475 NTEVHDISVAIGVDPHGPSDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKL 534

Query: 529 IHNGFLYIIKPPLYGIT------RGKSLQYVKDEESLEDYLINQSLS-----EEIELFCD 577
           I  G +++ +PPL+ +       +  +  Y  DE  LE  L   +       +       
Sbjct: 535 IEAGHIFVARPPLFRVDVPARGKKPAAKVYALDESELESILDKCAKDGVPREKCQISRFK 594

Query: 578 SKGVISKNDLRN 589
             G ++   L  
Sbjct: 595 GLGEMNAEQLWE 606



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 723 LDTIFSI-GRKGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT--DASQAD 774
           L++I     + G+      + R+KGLGEMNA QLWETTLNPDTR LL V++   D S  +
Sbjct: 571 LESILDKCAKDGVPREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGTFDFSATE 630

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            L ++LMG  E   RRE ++ +     +DI
Sbjct: 631 GLITKLMGKGEAAARRELMELHGDLVDVDI 660


>gi|163790377|ref|ZP_02184808.1| DNA topoisomerase IV subunit B [Carnobacterium sp. AT7]
 gi|159874281|gb|EDP68354.1| DNA topoisomerase IV subunit B [Carnobacterium sp. AT7]
          Length = 587

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 212/520 (40%), Positives = 313/520 (60%), Gaps = 14/520 (2%)

Query: 82  GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141
           G+PT +H   GI   +VI T LHAGGKF Q  YK SGGLHGVG SVVNALS WL + I R
Sbjct: 1   GMPTGMHSS-GIPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIIR 59

Query: 142 EGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           +G  Y+  F++ G     L    ++    GT V F P + IF+  + +YD L  RLRE +
Sbjct: 60  DGVHYQQKFVDGGKAKGSLKKIKTSNEKNGTIVHFKPDATIFTTVNLSYDVLAERLRESA 119

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FL   ++ISL+D+R+ +      +Y+ GI+ FVSYL+  K  L       +G  + I ++
Sbjct: 120 FLLKGLRISLVDERNDQA--EVFYYEEGIKEFVSYLNEDKDHLTPVA-YFEGENNEIEVE 176

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
            A ++NDGY E +L F NN+  KDGGTH +G+++A+T+    Y  K    K+  +++ G 
Sbjct: 177 FAFQYNDGYSETILSFVNNVRTKDGGTHEAGMKTAITKTFNDYARKVSLLKEKDKNLEGT 236

Query: 321 DCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           D REG  +V+SI++P+   +F  QTK KL + + RS VE+ V++ LS +L E+   ++ +
Sbjct: 237 DFREGLAAVISIRIPENLLQFEGQTKSKLGTPQARSAVETVVSEQLSYYLIENGDLSQQL 296

Query: 379 VKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           ++K L A   RDAAR+AR+     +K   +   L GKL     ++ K++EL+LVEGDSAG
Sbjct: 297 IRKALKAREARDAARKAREESRNGKKRKKNDTLLSGKLTPAQSKNAKRNELYLVEGDSAG 356

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAKQGR R+ QAILPLRGK++N E+A+  +++ ++EI T+I  +G G+G   FDI    
Sbjct: 357 GSAKQGRDRKFQAILPLRGKVINTEKAKLQEVMKNEEISTMIYTIGAGVG-PEFDIADCN 415

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG----ITRGKSLQY 552
           Y KIIIMTDAD DGAHI+TLLLTFF+R M  L   G +Y+  PPLY     I + + + Y
Sbjct: 416 YDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLFEAGKVYLALPPLYKLSRGIGKKEKIAY 475

Query: 553 VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
              ++ L     +   +  ++ +     + +       ++
Sbjct: 476 AWTDDELVQVTKDFGKNYILQRYKGLGEMNADQLWDTTMN 515



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 101/259 (38%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  +D               +      S  +          ++   ++     
Sbjct: 297 IRKALKAREARDAARKAREESRNGKKRKKNDTLLSGKLTPAQSKNAKRNELYLVEGDSAG 356

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +   V    +++  +  I       +  +  N 
Sbjct: 357 GSAKQGRDRKFQAILPLRGKVINTEKAKLQEVMKNEEISTMIYTIGAGVGPEFDIADCNY 416

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +        + ++      +  L    G K KI   
Sbjct: 417 DKIIIMTDADTDGAHIQTLLLTFFYRYMKPLFEAGKVYLALPPLYKLSRGIGKKEKIAYA 476

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L+      G K   +QRYKGLGEMNA QLW+TT+NPDTR+L+RVKI DA+QA+  
Sbjct: 477 WTDDELVQVTKDFG-KNYILQRYKGLGEMNADQLWDTTMNPDTRTLIRVKIDDAAQAEKR 535

Query: 777 FSRLMGDEVEPRREFIQEN 795
            S LMGD+VEPRR +I+ +
Sbjct: 536 VSVLMGDKVEPRRRWIESH 554


>gi|241764343|ref|ZP_04762371.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax delafieldii 2AN]
 gi|241366299|gb|EER60842.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax delafieldii 2AN]
          Length = 703

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 212/603 (35%), Positives = 303/603 (50%), Gaps = 42/603 (6%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS    +   S Y   SI++LKGL+ VK+RP MY   T  ++ L H+I EVLDNA DE+L
Sbjct: 44  MSAKPSSVSASEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPL-HIIQEVLDNAADEAL 99

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSY 114
            G+   I VTL+ DGS +V D+GRGIP  LH EE     E++ TRLHA     K    +Y
Sbjct: 100 AGFGKKIKVTLHQDGSVSVEDDGRGIPFGLHPEEKAPVIELVFTRLHAGGKFDKGKGGAY 159

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV----VTGSAGNDTG 170
             SGGLHGVGVSV NAL++ L+    REG +  + F  G +  PLV      G      G
Sbjct: 160 SFSGGLHGVGVSVTNALATRLEATSHREGKLARLVFSAGDVVEPLVARPLEAGERKQ--G 217

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V   P +  F         L H LR  + L   V +SL ++++ + +      KGG+ 
Sbjct: 218 TTVRVWPDAKYFESSALPLGELTHLLRSKAVLMPGVSVSLTNEKTRDTQTWQY--KGGLR 275

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN----------ISIDLAMRWNDGYHENVLCFTNNI 280
            ++                 +G                    + + +        + N I
Sbjct: 276 DYLQQTLSAD----PVIPLFEGEGFADAGHDSFAEGEGAAWCVAFTEDGQPVRESYVNLI 331

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           P   GGTH SGLR  L + + S++E           ++ +D     + VLS K+ DP+F 
Sbjct: 332 PTSAGGTHESGLRDGLFQAVKSFIELH-SLLPKGVKLMPEDVFARASYVLSAKVLDPQFQ 390

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            Q KE+L S +   +V  FV   L  WL +H    K + +  + A+  R  A +      
Sbjct: 391 GQIKERLNSRDAVRLVSGFVRPALELWLNQHVEYGKKLAELAIKAAQTRQRAGQK---VE 447

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           ++    +A LPGKL DC  RD   +E+FLVEGDSAGGSAK GR +ENQA+LPLRGK+LN 
Sbjct: 448 KRKGSGVAVLPGKLTDCESRDIAYNEVFLVEGDSAGGSAKMGRDKENQAVLPLRGKVLNT 507

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLL 518
                D++ ++ EI  +  ALG      + + +   LRY K+ I++DADVDG+HI+ LLL
Sbjct: 508 WEVDRDRLFANTEIHDISVALGVDPHGPADEPDLSGLRYGKVCILSDADVDGSHIQVLLL 567

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T FFR  P LI  G +Y+ +PPL+ +      +    + + + Y ++      I   C  
Sbjct: 568 TLFFRHFPKLIETGHIYVARPPLFRVDVPARGK----KPAAKMYALDDGELTAILDKCAK 623

Query: 579 KGV 581
           +GV
Sbjct: 624 EGV 626



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 5/90 (5%)

Query: 719 PCSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQAD 774
             ++LD     G  R+   + R+KGLGEMNA QLWETTLNPDTR LL V++     S  +
Sbjct: 614 LTAILDKCAKEGVPREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGGTGFSATE 673

Query: 775 DLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            L ++LMG  E   RRE ++ +     +DI
Sbjct: 674 GLITKLMGKGEAASRRELMELHGDAVEVDI 703


>gi|9971373|dbj|BAB12493.1| DNA gyrase B subunit [Polaribacter glomeratus]
          Length = 474

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 211/460 (45%), Positives = 299/460 (65%), Gaps = 10/460 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + ++G +++  +  G    P+   G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLTATVHKDGKLWQQEYSKGKALYPVKTIGET-DFN 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTFLP   IF+    FNYDTL  R+RELS+LN  + I+L DKR  +           
Sbjct: 60  GTVVTFLPDKTIFTQTTEFNYDTLASRMRELSYLNKGITITLTDKRETDDEGNFPTEIFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G+  F+ YLD  ++ L  + I ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 STEGLPEFIRYLDSTREQLTSTIISMEGEKNGIPVEVAMVYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LT  +  Y + S   K  K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTSTLKKYADDSGLLKNVKFEIAGDDFREGLTAIVSVKVQEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + +V S V   V++ L+ +LEE+P +AKIIV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNRDVTSAVSQAVSEMLTDYLEENPNDAKIIVQKVILAATARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +      +++K+RYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           FFR M  ++  G++YI  PPLY + +G+  +Y  D+   +
Sbjct: 420 FFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDNQRD 459


>gi|9971349|dbj|BAB12481.1| DNA gyrase B subunit [Stanierella latercula]
          Length = 474

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 216/475 (45%), Positives = 302/475 (63%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + ++G ++E  +  G    P+  TG   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLHAIVHKDGKVWEQEYERGKPLYPVKSTGDT-DFN 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P   IF    ++NYDTL  R+REL++LN  + I L DKR  +        T  
Sbjct: 60  GTIVTFKPDPTIFQQTLEYNYDTLASRMRELAYLNKGITIILTDKRHTDEEGNHVSETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ FV +LD  +  ++   I ++G +++I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFVKFLDTSRNAIIGDVISMEGEKNDIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  V GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADASGMLDKLKFEVAGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L  +LEE+P +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLENYLEENPSDAKTIVQKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPALCEVFLVEGDSAGGTAKQGRDRMFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  +  ALG  IG +        +KLRYHKI+IM DADVDG+HI TL+LTF
Sbjct: 360 HHKVFENEEIKNIFAALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHISTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY + +G   QY  +++  +  +     + +I+ +
Sbjct: 420 FFRYMKELIEAGHIYIAAPPLYLVKKGAKKQYAWNDDQRDMIVKEFGENSKIQRY 474


>gi|28866796|dbj|BAC65176.1| DNA gyrase B subunit [Polaribacter filamentus]
          Length = 474

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 213/475 (44%), Positives = 304/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + ++G +++  +  G    P+   G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLTATVHKDGKLWQQEYSKGKALYPVKTIGET-DFN 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTFLP   IF+    FNYDTL  R+RELS+LN  + I+L DKR  +           
Sbjct: 60  GTVVTFLPDKSIFTQTTEFNYDTLASRMRELSYLNKGITITLTDKRETDDEGNFPTEVFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G+  F+ YLD  ++ L  + I ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 STEGLPEFIRYLDSTREQLTSTIISMEGEKNGIPVEVAMVYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LT  +  Y + S   K  K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTSTLKKYADDSGLLKNVKFEIAGDDFREGLTAIISVKVQEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + +V S V   V++ L+ +LEE+P +AKIIV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNRDVTSAVSQAVSEMLTDYLEENPNDAKIIVQKVILAATARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +      +++K+RYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  ++  G++YI  PPLY + +G+  +Y  D+   +  +     S  I+ +
Sbjct: 420 FFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDHQRDVLVHQMGGSASIQRY 474


>gi|148470268|gb|ABQ66081.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 244/420 (58%), Positives = 313/420 (74%), Gaps = 3/420 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L LRI+R G +YE  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSERLFLRIRRSGALYEQEYRMGEPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS+ +F+   F+Y+ L +R+RE+SFLNS V+I L D+R+ 
Sbjct: 61  YPIRKIGEAT-GTGTEIRFQPSTQVFTETQFDYEVLANRIREISFLNSGVKIYLADERNE 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             R+   + +GGI AFV YL+R++  L  S     G    I +++A++W   Y E V CF
Sbjct: 120 --RQELFYVEGGIRAFVEYLNRNRTALHSSVCHFVGEEAGIGVEVALQWTKSYQETVFCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNN+PQ+DGGTHL+G RSALTR +  ++E++  ++K+K  V GDD REG T+V+S+++PD
Sbjct: 178 TNNLPQRDGGTHLTGFRSALTRTLVGFLEETGHARKEKVQVTGDDAREGLTAVVSVRVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VVE  V + L  +L EHP E + I +K++DA+  R+AARRAR
Sbjct: 238 PKFSSQTKDKLVSSEVKPVVEGLVAEKLREFLWEHPAEGRQIAEKMMDAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA LPGKLADC E+DP   ELFLVEGDSAGGSAKQ R R +QA+LPL+GK
Sbjct: 298 DLTRRKGALDIAGLPGKLADCQEKDPSLCELFLVEGDSAGGSAKQARDRRHQAVLPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
            +NVE+A FD++LSS EI  LITALG GIG+D F+   LRYH+I+IMTDADVDG+HIRTL
Sbjct: 358 TINVEKASFDRVLSSDEITALITALGCGIGKDDFNAGNLRYHRIVIMTDADVDGSHIRTL 417


>gi|148470174|gb|ABQ66035.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 248/421 (58%), Positives = 319/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GTGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG  AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGAAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQ K+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQAKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+G+
Sbjct: 300 DITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGR 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|148971277|gb|ABR20176.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 225/425 (52%), Positives = 299/425 (70%), Gaps = 5/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ +YKVSGGLHGVGVS VNALS +L  ++  +G  YE+ F  G   
Sbjct: 1   EVIMTVLHAGGKFDKGAYKVSGGLHGVGVSCVNALSKFLIAQVYSQGKTYEIRFAKGKPT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L+V G      GT VTFLP   IFS+++F++D L  R REL+FLN  + I+L D+R  
Sbjct: 61  QGLLVLGETE-KRGTRVTFLPDDTIFSIREFDFDVLAKRFRELAFLNRGITITLKDERDE 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHEN 272
           E  E   +Y+GGI +FV YL++ K+ L   PI   G++D     I  ++A++WN G+ E+
Sbjct: 120 EKEEALFYYEGGISSFVQYLNQGKEALFDPPIFFSGTKDGDDGPIEFEVALQWNKGFKES 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  F NNIP   GGTHL+G  +ALTR +  Y+      K DK ++ G+D REG T+VLS 
Sbjct: 180 IFTFVNNIPTAQGGTHLTGFSAALTRALNQYIRNKNLLKSDKITLPGEDMREGLTAVLST 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK++L +S+V SVV+    D L  +LEEHP  AKIIV KVL A+  R+AA
Sbjct: 240 KVMNPQFEGQTKQRLGNSDVGSVVQQITGDRLGTYLEEHPHIAKIIVDKVLLAAQAREAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           ++AR+LT RK  LD A LPG+L DC ERDP K E+F+VEGDSAGGSAK  R R  QAILP
Sbjct: 300 KKARELTIRKSALDSARLPGELVDCQERDPAKCEIFIVEGDSAGGSAKGARDRRFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++RF+K+L ++++G +I A G G+G ++F+  KLRYH+IIIMTDADVDG+H
Sbjct: 360 IRGKILNVEKSRFEKILQNEQVGNIIAAFGCGVGAENFNFEKLRYHRIIIMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|310781033|gb|ADP23992.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 392

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 202/395 (51%), Positives = 272/395 (68%), Gaps = 3/395 (0%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +T LHA
Sbjct: 1   YEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHA 60

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L V G  
Sbjct: 61  GGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLEVIGET 120

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
                T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +       Y
Sbjct: 121 EETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--EVFNY 177

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI  ++G
Sbjct: 178 EGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNIDTREG 237

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F  QTK 
Sbjct: 238 GTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKT 297

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTRRK  L
Sbjct: 298 KLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRRKSAL 357

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           +  +LPGKLADCSE+DP K ELFLVEGDSAGGSAK
Sbjct: 358 ENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 392


>gi|13517063|dbj|BAB40414.1| DNA gyrase B subunit [Cytophaga sp. MBIC01485]
          Length = 474

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 214/463 (46%), Positives = 300/463 (64%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT+VTFLP   IF+    F+Y+TL +RLREL+FLN  ++I L DKR  +           
Sbjct: 60  GTDVTFLPDRSIFTQTTEFSYETLANRLRELAFLNKGIKIILTDKRHKDEEGNFVTDVFQ 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD  ++P++   I ++G ++ I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIRFLDDTRQPIIADVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V+  L A+LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCSE DP   E+FLVEGDSAGG+AKQGR RE QAI+PLRGKILNVE+A 
Sbjct: 300 MSGGGLPGKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DAD+DG+HI TL+LTF
Sbjct: 360 THKVFENEEIRNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  +I  G++YI  PPLY + +G   +Y   ++  ++  
Sbjct: 420 FFRYMREMIEKGYIYIATPPLYLVKKGAKKRYAWSDKERDEIA 462


>gi|13517035|dbj|BAB40400.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04469]
          Length = 474

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 222/475 (46%), Positives = 308/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G   +D 
Sbjct: 1   DKYSYKVSGGLHGVGVSCVNALSTHLKATVYREGKIWEQEYEKGKAMYPVKGIGDT-DDR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTFLP   IF     +NYDTL  R+REL++LN  + I+L DKR      E    T  
Sbjct: 60  GTAVTFLPDPSIFQTTTEYNYDTLASRMRELAYLNKGITITLTDKRQKDDKGEFVSETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ FV +LD +++P++   I ++G +++I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFVRFLDGNRQPIIGEVISMEGEKNDIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTSSLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ +  +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMVEIYLEEHPDDAKTIVQKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKLADCSE DP+  E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLADCSETDPEACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRY KI+IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYKKIVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  L+  G +YI  PPLY + +GK ++Y   E+  ++Y      S  ++ +
Sbjct: 420 FFRYMRELVEGGHVYIATPPLYLLKKGKKMRYAWSEKERDEYNAQMGGSASVQRY 474


>gi|13517015|dbj|BAB40390.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04452]
          Length = 474

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 218/463 (47%), Positives = 299/463 (64%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G +    
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSMHLKATVHRDGKIWEQEYERGKTLYPVKTVGDSDIA- 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P  +IF    ++NYDTL  RLREL++LN  + + L D R  +        T  
Sbjct: 60  GTIVTFKPDPEIFQQTLEYNYDTLASRLRELAYLNKGITVVLTDLRHKDEEGAFISETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G+  FV YLD  ++PLMQ+ I  +G ++ + +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLTEFVQYLDATREPLMQTVISFEGEKNGVPVEVAMIYNTSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  + + S    K K  V GDD RE   S++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTHTLKKFADNSGMLDKLKFDVSGDDFRERINSIISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVSASVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAAQKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHKI+IM DAD+DG+HI TL+LTF
Sbjct: 360 QHKVFENEEIRNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  L+ NG +YI  PPLY + +G+  QY  ++   ++  
Sbjct: 420 FFRYMRELVENGHVYIATPPLYLVKKGQKKQYAWNDAERDEIA 462


>gi|291542541|emb|CBL15651.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Ruminococcus bromii L2-63]
          Length = 661

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 190/662 (28%), Positives = 326/662 (49%), Gaps = 28/662 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            + + YD  SI  LKG D V+KRP++  G  DG  G  H ++E+L N+IDE+ EGY   I
Sbjct: 4   KKTTDYDNTSITTLKGADRVRKRPAVIFGS-DGIDGCQHSVFEILSNSIDEAREGYGKKI 62

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVSGGLH 121
           TVT   DGS  V D+GRGIP D ++ E     E++   L+AGGK+N      Y+ S G++
Sbjct: 63  TVTRYSDGSIEVEDHGRGIPVDYNENEKRYNWELVFCELYAGGKYNNNEGENYEFSLGMN 122

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           G+G+      S ++ + I+R+G  Y + F  G +   L     +  DTGT++ + P  ++
Sbjct: 123 GLGLCSTQYSSEYMDVDIRRDGYRYTLRFEKGEIVGKLKKEPYSKKDTGTKIHWKPDLEV 182

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL----- 236
           F+  D   +     ++  + +N+ ++    ++        +  Y  GI   V+ +     
Sbjct: 183 FTDIDIQPEYFLDIMKRQAIVNAGIEFVFRNQNGKSFDTTSYNYVNGIVDHVAEVVGENG 242

Query: 237 ---DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
               +H +  +++  R         +D+++ +++  H     + N+   + GG     +R
Sbjct: 243 LSSIQHWETEVKTRDRDDKPEYKCKMDISVAFSNKVHLT-EYYHNSSWLEHGGAPDKAVR 301

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A   QI SY++++    K +  +  DD  +    V+S       + +QTK+ + +  ++
Sbjct: 302 NAFVYQIDSYLKQNNKYNKTESKIKYDDVEDSLVCVISSFSSVSSYENQTKKAVTNKGIQ 361

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDIASLP 411
             + +F+   L  +  E+PLEA+ I ++VL     R+ A + R   ++K  G LDI +  
Sbjct: 362 DAMTAFLRQSLEVYFIENPLEAEKICEQVLINKRSRENAEKTRLNIKKKLSGNLDITNRV 421

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
            K  DC  +D ++ ELF+VEGDSA G+ KQ R+ + QAI+P+RGKILN  +A +DK+  S
Sbjct: 422 AKFVDCRSKDTEQRELFIVEGDSALGACKQARNPDFQAIMPIRGKILNCLKADYDKIFKS 481

Query: 472 QEIGTLITALGTGIGQD--------SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           + I  L+  LG G+           SFD+N LR+ KII+ TDADVDG  IRTLLLT  +R
Sbjct: 482 EIITDLLKVLGCGVEVKSKANKNLSSFDMNALRWSKIILCTDADVDGFQIRTLLLTMLYR 541

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P+LI  G ++I + PLY IT    + +  DE   + ++      +         G   
Sbjct: 542 LTPTLIEEGKVFIAESPLYEITSKNDVYFAYDEVEKDKFIEQLGKEKFTIQRSKGLGENE 601

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            +     + +   ++   +           + A I  V   ++ Q     +       ++
Sbjct: 602 PD-----MMNLTTMNPESRRLIKVLPADAEQTAEIFDVLLGDNLQGRKDYIVEHGNEYID 656

Query: 644 FI 645
            +
Sbjct: 657 QL 658



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 106/306 (34%), Gaps = 33/306 (10%)

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           +  Q    + N  +           +   + ++++    E       +++      +   
Sbjct: 347 YENQTKKAVTNKGIQDAMTAFLR--QSLEVYFIENPLEAEKICEQVLINKRSRENAEKTR 404

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKL 638
           +  K  L   +D   ++ K +     + ++  +             ++      ++    
Sbjct: 405 LNIKKKLSGNLDITNRVAKFVDCRSKDTEQRELFIVEGDSALGACKQARNPDFQAIMPIR 464

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIF--------SF 685
              LN +    +K +   I    + V     +  ++  +     + +++           
Sbjct: 465 GKILNCLKADYDKIFKSEIITDLLKVLGCGVEVKSKANKNLSSFDMNALRWSKIILCTDA 524

Query: 686 GSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC----------SLLDTIFSI------ 729
                +I +  +   Y    +LI  G       P              D +         
Sbjct: 525 DVDGFQIRTLLLTMLYRLTPTLIEEGKVFIAESPLYEITSKNDVYFAYDEVEKDKFIEQL 584

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789
           G++  ++QR KGLGE     +  TT+NP++R L++V   DA Q  ++F  L+GD ++ R+
Sbjct: 585 GKEKFTIQRSKGLGENEPDMMNLTTMNPESRRLIKVLPADAEQTAEIFDVLLGDNLQGRK 644

Query: 790 EFIQEN 795
           ++I E+
Sbjct: 645 DYIVEH 650


>gi|9971335|dbj|BAB12474.1| DNA gyrase B subunit [Cellulophaga lytica]
          Length = 474

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 214/463 (46%), Positives = 305/463 (65%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G    +T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNSLKATVYREGKIWEQEYERGKALYPVKSIGETE-ET 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MF 224
           GT VTF P   IF+    +NY+TL +R+REL++LN  V IS+ DKR  + +        +
Sbjct: 60  GTIVTFYPDDTIFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKGEFLSEVFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD +++ L++  + ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIKFLDGNREQLIREVVSMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEE+P +AK+IV+KV+ A+  R AA +AR++ +RK V
Sbjct: 240 TKLGNREVSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+D  K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIRNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  LI  G +YI  PPLY + +G   +Y  +++  ++  
Sbjct: 420 FFRFMRELIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIA 462


>gi|257439262|ref|ZP_05615017.1| DNA gyrase subunit B [Faecalibacterium prausnitzii A2-165]
 gi|257198304|gb|EEU96588.1| DNA gyrase subunit B [Faecalibacterium prausnitzii A2-165]
          Length = 663

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 185/663 (27%), Positives = 310/663 (46%), Gaps = 30/663 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y  +SI  LKG D V+KRP++  G  DG  G  H I+E++ N+IDE+ +G+ D I V
Sbjct: 4   KQEYGNESITSLKGADRVRKRPAVIFGS-DGVEGCAHSIFEIVSNSIDEARDGHGDTINV 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGVG 124
           T   DGS  V D GRG+P D +  EG    E++   ++AGGK+   + +Y+ S GL+G+G
Sbjct: 63  TRCKDGSVIVEDFGRGMPVDWNNGEGRYNWELLFCEMYAGGKYGEGEDNYEFSLGLNGLG 122

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +      S+W+   I R+G  Y + F  G     L      G  TG+ + + P  ++F+ 
Sbjct: 123 LCATQYASAWMTADIYRDGFHYHLDFKRGENVGGLQKEPYKGRRTGSIIHWKPDDEVFTD 182

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRH 239
            D      +  LR  + +N+ + ++  D++     + +P + +  Y+ GI  +V  +   
Sbjct: 183 IDVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWKESWCYQNGIADYVQEVAGE 242

Query: 240 K--KPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-----VLCFTNNIPQKDGGTHLSGL 292
               P+        G       D  +R +  +  +     +  + N+   + GG+    +
Sbjct: 243 DTLTPVFSCESEASGRDREDQPDYKVRMSAAFCFSNKVQLLEYYHNSSWLEHGGSPEHAV 302

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A   QI  Y++     KK + ++   D ++    V S       + +QTK+ + +  V
Sbjct: 303 RTAFVYQINKYLKDKNLYKKGESAISFQDVQDCLVYVSSSFSTRTSYENQTKKAITNKFV 362

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI--ASL 410
              +  F+   L  +  E P EA+ I ++VL     R+ A + R   ++     I  A+ 
Sbjct: 363 SQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQIDLANR 422

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
             K  DC  +D  + EL++VEGDSA G+ KQ R  E QAI+P+RGKILN  +A + ++  
Sbjct: 423 VQKFVDCRTKDASRRELYIVEGDSAMGAVKQSRDSEYQAIMPIRGKILNCLKADYARIFK 482

Query: 471 SQEIGTLITALGTGI---GQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           S  I  LI  +G G+   G+ +     F+I+ LRY+KI+I TDADVDG  IRTL+LT  +
Sbjct: 483 SDVIVDLIKVMGCGVELGGKHNKELATFNIDNLRYNKIVICTDADVDGYQIRTLVLTMLY 542

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           R  P+LI+ G++YI + PLY IT      +   E     +L      +         G  
Sbjct: 543 RLTPTLINEGYVYIAESPLYEITTKDRTYFAYTEPEKAAFLKEIGDKKYTIQRSKGLGEN 602

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
               +         ++   +           E A +  +   ++       +A   A  L
Sbjct: 603 DPEMMW-----LTTMNPESRRLIKVLPTDVEETARVFDLLLGDNLAGRKEHIAQHGAEYL 657

Query: 643 NFI 645
           + +
Sbjct: 658 DDL 660



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 105/320 (32%), Gaps = 39/320 (12%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+               + +++  E  +       ++++     + 
Sbjct: 347 TSYENQTKKAITNKFVSQAMTDFLK--HYLEVYFLEKPEEAQKICQQVLVNKQSREHAEK 404

Query: 579 KGVISKNDLRNFIDDALKIDKLIK---DFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
                K  L   ID A ++ K +          +   +E     G    +S      ++ 
Sbjct: 405 TRQSIKKTLSTQIDLANRVQKFVDCRTKDASRRELYIVEGDSAMGAV-KQSRDSEYQAIM 463

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILV--KRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
                 LN +     + +   +    I V    +  G +    L   +I +       I 
Sbjct: 464 PIRGKILNCLKADYARIFKSDVIVDLIKVMGCGVELGGKHNKELATFNIDNLRYNKIVIC 523

Query: 694 SNRIEENY---------------------------LTILSLICNGDKIKITGPCSLLDTI 726
           ++   + Y                             +  +                  +
Sbjct: 524 TDADVDGYQIRTLVLTMLYRLTPTLINEGYVYIAESPLYEITTKDRTYFAYTEPEKAAFL 583

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG K  ++QR KGLGE +   +W TT+NP++R L++V  TD  +   +F  L+GD + 
Sbjct: 584 KEIGDKKYTIQRSKGLGENDPEMMWLTTMNPESRRLIKVLPTDVEETARVFDLLLGDNLA 643

Query: 787 PRREFIQENS---LPSALDI 803
            R+E I ++    L   LD+
Sbjct: 644 GRKEHIAQHGAEYLD-DLDV 662


>gi|119369944|gb|ABL67986.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 248/421 (58%), Positives = 319/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GRGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILP++GK
Sbjct: 300 DLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPVKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+III+TDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIITDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|148470238|gb|ABQ66066.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 255/421 (60%), Positives = 315/421 (74%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L L I R G ++E  + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   + +GT V F PS   FS   FN + L  RLRELSFLN+ V+I L D+R  
Sbjct: 61  YPLRVIGET-DSSGTTVRFWPSELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
              E    Y+GG+  FV Y++  K  L +       + + I +++A++WN+ Y ENV CF
Sbjct: 119 -NLEHVYDYEGGLSEFVKYINEGKTHLNEIFHFTADTENGIGVEVALQWNESYQENVRCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PD
Sbjct: 178 TNNIPQEDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRK  LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GK
Sbjct: 298 EMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKM+SSQE+GTLITALG GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|119369938|gb|ABL67983.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 254/423 (60%), Positives = 321/423 (75%), Gaps = 6/423 (1%)

Query: 97  EVIMTRLHAG--GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           EVIMT LH G  GKF+  SYKVSGGLHGVGVSVVNALS +L L I R+G ++   +  G 
Sbjct: 1   EVIMTVLH-GRRGKFDASSYKVSGGLHGVGVSVVNALSDYLLLTIHRDGKVHRQEYHLGD 59

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL V G +    GT + F PS+ IF+   F+Y+ L  RLRELSFLNS V+I LID+R
Sbjct: 60  PAAPLAVVGESA-QRGTTIRFKPSAQIFTHIQFSYEILAKRLRELSFLNSGVRIELIDER 118

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
             E R     ++GG++AFV+YL+R + P+  S +  +     +++++AM+WND Y E++ 
Sbjct: 119 --ENRSDVFQHEGGLKAFVTYLNRARTPIHDSVMWFKSQEGPVTVEVAMQWNDSYQESMF 176

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           C+TNNIPQKDGGTHL+G RSALTR +  Y+EK    KKDK    GDD REG T++LS+K+
Sbjct: 177 CYTNNIPQKDGGTHLAGFRSALTRMLNDYIEKELSGKKDKVPTTGDDAREGLTAILSVKL 236

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+ +VE+ V   L  +L EHP EAK IV K+++A+  R+AAR+
Sbjct: 237 PDPKFSSQTKDKLVSSEVKGIVEAAVGPKLQDFLLEHPQEAKSIVAKIIEAAHAREAARK 296

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKG LD+A LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+
Sbjct: 297 AREMTRRKGALDVAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLK 356

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH+II++ DADVDG+HIR
Sbjct: 357 GKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLTKLRYHRIILLADADVDGSHIR 416

Query: 515 TLL 517
           TLL
Sbjct: 417 TLL 419


>gi|13517057|dbj|BAB40411.1| DNA gyrase B subunit [Cytophaga sp. MBIC01482]
          Length = 474

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 214/463 (46%), Positives = 300/463 (64%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT+VTFLP   IF+    F+Y+TL +RLREL+FLN  ++I L DKR  +           
Sbjct: 60  GTDVTFLPDRSIFTQTTEFSYETLANRLRELAFLNKGIKIILTDKRHKDEEGNFVTDVFQ 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD  ++P++   I ++G ++ I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIRFLDDTRQPIIADVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V+  L A+LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCSE DP   E+FLVEGDSAGG+AKQGR RE QAI+PLRGKILNVE+A 
Sbjct: 300 MSGGGLPGKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DAD+DG+HI TL+LTF
Sbjct: 360 THKVFENEEIRDIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADIDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  +I  G++YI  PPLY + +G   +Y   ++  ++  
Sbjct: 420 FFRYMREMIEKGYIYIATPPLYLVKKGAKKRYAWSDKERDEIA 462


>gi|13517059|dbj|BAB40412.1| DNA gyrase B subunit [Cytophaga sp. MBIC01483]
          Length = 475

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 216/466 (46%), Positives = 302/466 (64%), Gaps = 10/466 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK  + +EG ++E  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNHLKATVYKEGKVWEQEYERGKALYPVKAIGDT-DFT 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GTEVTF P   IF     +NYDTL  RLREL++LN  + ++L DKR+     E    T  
Sbjct: 60  GTEVTFTPDDSIFQQTTEYNYDTLASRLRELAYLNKGITVTLTDKRNKKEDGEFENETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G+  FV +LD ++ P++ + I ++G ++ + +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SNEGLSEFVRFLDGNRNPIIGNVISMEGEKNGVPVEVAMIYNDSYAENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LT  +  + + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTGSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V + +  ++EE+P +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVAEMIEIYMEENPNDAKTIVQKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE DP   E+FLVEGDSAGG+AKQGR RE QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSETDPAVCEVFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           FFR M  L+  GF+YI  PPLY + +G+  QY  D++  +      
Sbjct: 420 FFRYMRELVEKGFVYIATPPLYLVKKGQKKQYAWDDKERDAIAERL 465


>gi|9971329|dbj|BAB12471.1| DNA gyrase B subunit [Cellulophaga lytica]
          Length = 474

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 214/463 (46%), Positives = 305/463 (65%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G    +T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNSLKATVYREGKIWEQEYERGKALYPVKSIGETE-ET 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MF 224
           GT VTF P   IF+    +NY+TL +R+REL++LN  V IS+ DKR  + +        +
Sbjct: 60  GTIVTFYPDDTIFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKGEFLSEVFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD +++ L++  + ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIKFLDGNREQLIREVVSMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEE+P +AK+IV+KV+ A+  R AA +AR++ +RK V
Sbjct: 240 TKLGNREVSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+D  K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  LI  G +YI  PPLY + +G   +Y  +++  ++  
Sbjct: 420 FFRFMRELIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIA 462


>gi|9971337|dbj|BAB12475.1| DNA gyrase B subunit [Cellulophaga lytica]
          Length = 474

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 215/463 (46%), Positives = 304/463 (65%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G    +T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNSLKATVYREGKIWEQEYERGKALYPVKSIGETE-ET 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF P   IF+    +NY+TL +R+REL++LN  V IS+ DKR      E      +
Sbjct: 60  GTIVTFYPDDTIFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKGEFLSEIFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD +++ L++  + ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIKFLDGNREQLIREVVSMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEE+P +AK+IV+KV+ A+  R AA +AR++ +RK V
Sbjct: 240 TKLGNREVSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+D  K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  LI  G +YI  PPLY + +G   +Y  +++  ++  
Sbjct: 420 FFRFMRELIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIA 462


>gi|13516997|dbj|BAB40381.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04441]
          Length = 474

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 218/461 (47%), Positives = 296/461 (64%), Gaps = 10/461 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R G ++E S+  G   +P+   G      
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSESLKATVYRNGKVWEQSYERGKALHPVKSVGETE-LR 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF P S IF    +++YDTL  R+RELS+LN  V I+L DKR      E      +
Sbjct: 60  GTMVTFKPDSTIFAEDLEYSYDTLASRMRELSYLNKGVTITLTDKRHKGEDGEAVFERFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ FV YLD  +  L++  I ++G +++I +++AM +N  + EN+  + NNI   +
Sbjct: 120 SDEGLKEFVRYLDGTRDSLIRDVIAMEGEKNDIPVEVAMVYNTSFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTTTLKKYADASGMLDKLKFEIAGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L  +LEEHP +A+ IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLENYLEEHPDDARAIVQKVILAAQARHAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCSE+DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSGGGLPGKLSDCSEQDPAICEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TA G  IG +        +KLRYHKI+IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIRNIFTAFGVTIGTEEDSKALNLDKLRYHKIVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           FFR M  LI NG++YI  PPLY + +G    Y   ++  + 
Sbjct: 420 FFRYMKELIENGYIYIATPPLYLVRKGNKKAYAWSDKERDQ 460


>gi|239735461|dbj|BAH70497.1| gyrase B subunit [Candidatus Amoebophilus asiaticus]
          Length = 477

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 220/474 (46%), Positives = 307/474 (64%), Gaps = 9/474 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           + +YKVSGGLHGVGVS VNALS  L+  + R+G IY+  +  G    P+   G+     G
Sbjct: 1   KGTYKVSGGLHGVGVSCVNALSIHLQATVYRDGKIYQQEYAKGAPLYPVKEVGTTT-LRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYK 226
           T + F P   IF+   +NY T+  RL EL++LN+ + I L D R  +      + T   +
Sbjct: 60  TTIHFQPDDSIFTTTTYNYSTIAARLGELAYLNAGLTIELTDLREQDQEGNFLQETFHSE 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+  FV+YLD  ++ L+  PI ++G + ++ + +A+ +N G+ ENV+ + NNI   +GG
Sbjct: 120 GGLAEFVAYLDNAREKLIPQPIYMEGEKYDVPVQVALSYNTGFTENVVSYVNNINTIEGG 179

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH++G R ALTR + SY EKS   +K K  ++GDD REG T+V+S+K+ +P+F  QTK K
Sbjct: 180 THVAGFRRALTRTLKSYAEKSNLLEKAKVEIVGDDFREGLTAVISVKVSEPQFEGQTKTK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV   V+S V++ L  +LEEHP EAKIIV KV+ A+  R AAR+AR++ +RK VL 
Sbjct: 240 LGNAEVVGAVDSCVSETLQNYLEEHPQEAKIIVSKVILAAQARHAARKAREMVQRKNVLT 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              LPGKLADCS+ DP   EL+LVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A+  
Sbjct: 300 GGGLPGKLADCSDSDPAACELYLVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKAQEH 359

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           ++  ++++  +I ALG   G +         KLRYHK+IIMTDADVDG+HIRTL+LTFF+
Sbjct: 360 RIYDNEQLRNMIMALGITFGTEEDAKAVNLEKLRYHKVIIMTDADVDGSHIRTLILTFFY 419

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           R +  L+  GFLYI  PPLY + RG   +Y   E+     + + S   + E   
Sbjct: 420 RYLKVLLERGFLYIALPPLYLVKRGSETRYCWTEQDRIAAVKDFSPDGKTESVN 473


>gi|6939919|dbj|BAA90680.1| DNA gyrase subunit B [Cytophaga fermentans]
          Length = 477

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 220/470 (46%), Positives = 313/470 (66%), Gaps = 9/470 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS++LK  + R G  Y+  +  G+    L   G A +DT
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTYLKAEVHRNGKAYQQEYAIGVPQGELQELG-ATDDT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFY 225
           GT +TF P   IF+  ++ Y  L +RLREL+FLN  ++I+L D+R        R      
Sbjct: 60  GTIITFKPDDSIFNTTEYKYSILANRLRELAFLNRGIRITLTDERELDEEGNQRTDEFHS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + G+  FV ++D  ++ L ++ I I   ++++ ++LA+++N  + ENV  + NNI   +G
Sbjct: 120 ERGLVEFVEFIDETREKLTENVIHITTEKNDVPVELAIQYNTSFGENVYSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R  LTR + ++ +KS    K K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHLTGFRRGLTRTLKTWADKSGLLSKLKFDIAGDDFREGLTAVISVKVQEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SEV   V+  V+  L+ +LEE+P +AKIIV KV+ A+  R AAR+AR++ +RK V+
Sbjct: 240 KLGNSEVSLAVDQAVSTALTHYLEENPKDAKIIVNKVILAATARHAARKAREMVQRKTVM 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCS++DP   E+FLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A  
Sbjct: 300 SGGGLPGKLADCSDKDPAICEVFLVEGDSAGGTAKQGRNRRFQAILPLRGKILNVEKALQ 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  + TALG  IG +         K+RYHK++IMTDADVDG+HI TL++TFF
Sbjct: 360 HKVFENEEIKNIFTALGITIGTEEDSKALNLEKIRYHKVVIMTDADVDGSHITTLIMTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           FR M  LI NG+LYI  PPLY   +GK+++Y  +E+  +D++   S  +E
Sbjct: 420 FRYMRDLIKNGYLYIATPPLYLCRKGKNVEYCWNEQQRQDFVAKYSGGKE 469


>gi|119221381|gb|ABL61894.1| GyrB [uncultured bacterium]
          Length = 417

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 252/420 (60%), Positives = 322/420 (76%), Gaps = 3/420 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A  + G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R+ 
Sbjct: 61  APIAR-GDASRNHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERA- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE T  Y+GGI AFV +L+R K  +  S I + G RD I ++ A++WN+GY+E VLCF
Sbjct: 119 -SREETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGIVVEAALQWNEGYNEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K +V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+MLSS EIGTLITALGTGIG   FD+ KLRYH +IIMTDADVDG+H    
Sbjct: 358 ILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHPVIIMTDADVDGSHTVPC 417


>gi|2905602|gb|AAC03526.1| gyrase subunit B [Shewanella putrefaciens]
          Length = 419

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 253/422 (59%), Positives = 325/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I LID+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGINAFVDYLNRNKTPVNKEVFHFMQERDDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG  D+  LPGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGAFDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML SQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|21465844|pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus
           Thermophilus Gyrase B In Complex With Novobiocin
 gi|21465845|pdb|1KIJ|B Chain B, Crystal Structure Of The 43k Atpase Domain Of Thermus
           Thermophilus Gyrase B In Complex With Novobiocin
          Length = 390

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/373 (43%), Positives = 229/373 (61%), Gaps = 4/373 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA +I++LKGL+ V+ RP+MYIG T G  G HH+  E+LDNA+DE+L GYA  I V L
Sbjct: 2   SYDASAIRVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEILVRL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS TV DNGRGIP DL  EEG  A EVI   LH+GGKF Q +YKVSGGLHGVG SVV
Sbjct: 61  NEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDF 187
           NALS W  + + REG  + ++F  G +  PL V G A    TGT VTF P  +IF    F
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRF 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +   ++ RLRE+++L + +++   D++  +        KGG+ +F   L   +  L + P
Sbjct: 181 DPSKIRARLREVAYLVAGLKLVFQDRQHGKE--EVFLDKGGVASFAKALAEGEDLLYEKP 238

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             I+G+   + +++      GY+  +L + N IP +DGGTHL+  +SA +R +  Y +K+
Sbjct: 239 FLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKA 298

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +K+      GDD  EG  +V+S+K+P+P+F  QTK KL++ E  + V   V + L   
Sbjct: 299 GLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEI 358

Query: 368 LEEHPLEAKIIVK 380
           LEE+P  AK + +
Sbjct: 359 LEENPRIAKAVYE 371


>gi|119369894|gb|ABL67961.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 420

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 242/421 (57%), Positives = 324/421 (76%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVG+SVVNALS  L L IKREG  +E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGISVVNALSKKLTLSIKREGQRWEQEYATGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+  TG+    TGT + F P  ++F   +F++  LQ+R +EL+FLN +++I+L D+R  
Sbjct: 61  APIAPTGNC-RGTGTTIIFWPDPEVFESTEFSFSRLQNRFKELAFLNDNLKITLKDEREG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE T  Y+GG+ AFV+ +++ ++ +  + IR++G RD I +D A++WNDGY E+V  F
Sbjct: 120 RKREATYHYEGGVAAFVADINKGREAIHPTIIRVRGERDGIVVDAAIQWNDGYAESVYPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +++Y+++   + K+K +    D REG  ++LS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRSAMTRAMSAYLDREGIAAKNKITADSSDMREGLAAILSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR VVE  + + L+ +L+EHP EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPVVEGIIAEALTTFLDEHPKEAQAIAAKIVEAARAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           + TRRK  +DIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 ETTRRKSAMDIANLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD++L S+EIGT+ITALGTGIG D F+  KLRYH+II+MTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRILESEEIGTMITALGTGIGPDEFNAAKLRYHRIILMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|148971285|gb|ABR20180.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 255/421 (60%), Positives = 314/421 (74%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L L I R G ++E  + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   + +GT V F PS   FS   FN + L  RLRELSFLN+ V+I L D+R  
Sbjct: 61  YPLRVIGET-DSSGTTVRFWPSELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
              E    Y+GG+  FV Y++  K  L +       + + I +++A++WN+ Y ENV C 
Sbjct: 119 -NLEHVYDYEGGLSEFVKYINEGKTHLNEIFHFTADTENGIGVEVALQWNESYQENVRCL 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRK  LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GK
Sbjct: 298 EMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKM+SSQE+GTLITALG GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|315273170|ref|ZP_07869216.1| DNA gyrase subunit B [Listeria marthii FSL S4-120]
 gi|313616206|gb|EFR89285.1| DNA gyrase subunit B [Listeria marthii FSL S4-120]
          Length = 415

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 182/416 (43%), Positives = 267/416 (64%), Gaps = 9/416 (2%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVQESASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L++ + REG  Y   F  G +   +   G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVHVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IF+    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKRDEHKVRKNFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           S+ +   ++ L+ ++ E+P  AK IV+K + AS  R AA+RAR++ R+   L+I++
Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISN 414


>gi|9971333|dbj|BAB12473.1| DNA gyrase B subunit [Cellulophaga lytica]
 gi|9971339|dbj|BAB12476.1| DNA gyrase B subunit [Cellulophaga lytica]
          Length = 474

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 214/463 (46%), Positives = 304/463 (65%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G    +T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNNLKATVYREGKIWEQEYERGKALYPVKSIGETE-ET 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MF 224
           GT VTF P   IF+    +NY+TL +R+REL++LN  V IS+ DKR  + +        +
Sbjct: 60  GTIVTFYPDDTIFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKGEFLSEVFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD +++ L++  + ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIKFLDGNREQLIRDVVSMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEE+P +AK+IV+KV+ A+  R AA +AR++ +RK V
Sbjct: 240 TKLGNREVSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+D  K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  LI  G +YI  PPLY + +G   +Y  +++  ++  
Sbjct: 420 FFRFMRELIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIA 462


>gi|13517055|dbj|BAB40410.1| DNA gyrase B subunit [Cytophaga sp. MBIC01481]
          Length = 474

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 221/475 (46%), Positives = 310/475 (65%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L  ++ ++G ++E  +  G    P+  TG   +D 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSVHLHAKVYKKGQVWEQEYEKGKPLYPVKSTGET-DDN 59

Query: 170 GTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF P  +IF     F+YDTL  RLREL+FLN  ++ISLIDKR+     E       
Sbjct: 60  GTVVTFKPDPEIFKEVTVFSYDTLAKRLRELAFLNKGIKISLIDKRNKDEKGEFISDNFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD  + P++   I ++G ++ I +++AM +ND Y+EN+  + NNI   +
Sbjct: 120 SEEGLKEFIRFLDETRVPIIGDVISMEGEKNEIPVEVAMIYNDSYNENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTTTLKKYADASGMLDKLKFEISGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L A+LEE+P +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVTSAVSQAVSEMLEAYLEENPNDAKTIVQKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCSE+DP++ E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSGGGLPGKLSDCSEQDPEQCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHKI+IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIRNIYTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY I +G   +Y  +E+  ++     +    ++ +
Sbjct: 420 FFRYMRELIEAGHVYIATPPLYLIKKGSKKRYAWNEKERDEITNEYAGGVAVQRY 474


>gi|2905608|gb|AAC03529.1| gyrase subunit B [Shewanella oneidensis]
          Length = 419

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 244/414 (58%), Positives = 318/414 (76%), Gaps = 4/414 (0%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G+ D 
Sbjct: 3   IIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDA 62

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           P+   G A   TGTE+ F PS   FS  +F+++ L  R+R+LSFLNS V I LI +R  +
Sbjct: 63  PIKEIGDAT-KTGTEIRFWPSEQTFSDVEFHFEILAKRVRKLSFLNSGVGIRLIHERDNK 121

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCF 276
                  Y+ GI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ CF
Sbjct: 122 N--EFFKYQSGISAFVEYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFCF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PD
Sbjct: 180 TNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA   R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAPRAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           + TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 300 EKTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDA+VDG
Sbjct: 360 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDAEVDG 413


>gi|9971381|dbj|BAB12497.1| DNA gyrase B subunit [Myroides odoratus]
          Length = 474

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 217/475 (45%), Positives = 302/475 (63%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L+  + R+G IYE  +  G    P+ V G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDLLRATVYRDGKIYEQEYSKGKALFPVKVIGET-DKR 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT V F P   IF+   +++YDTL  RLREL+FLN  + I+L D R  +     +    F
Sbjct: 60  GTTVMFKPDPTIFTQTLEYSYDTLASRLRELAFLNKGLTITLTDAREVDEKGQQKSEVFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            K G++ F+ +LD ++ P++   I ++  + ++ +++A+ +ND Y EN+  + NNI   +
Sbjct: 120 SKEGLKEFIKFLDGNRTPIINEVIWMESDKGDVPVEVALVYNDTYSENIYSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL G R  LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLQGFRMGLTRTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVMEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V + L  +LEE+P +AKIIV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVVSPVSQAVAEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MTGGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  S+EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 GHKVFESEEIKNIFTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI NG ++I  PPLY + +G+   Y   +E   D +        ++ +
Sbjct: 420 FFRYMRGLIENGHVFIATPPLYMVKKGQRKVYAWSDEERIDLMEEMGNGSSVQRY 474


>gi|23978227|dbj|BAC21110.1| DNA gyrase B subunit [Microcystis wesenbergii]
          Length = 391

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 186/390 (47%), Positives = 268/390 (68%), Gaps = 2/390 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I V +  DGS +V+D+GRGIPTD+H   G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHIEVDIKADGSVSVTDDGRGIPTDVHPTTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVG+SVVNALS+W+ + + R+  ++   +  GI  
Sbjct: 62  ETVLTILHAGGKFGSGGYKVSGGLHGVGISVVNALSAWVDVTVWRDHKVHTQRYERGIPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             LV + S G+ TGT V FLP ++IFS   +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELVSSPSEGDKTGTRVNFLPDTEIFSQGIEFDYSTLSGRLRELAYLNAGVKITFSDYRP 181

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVL 274
            EP      Y+GGI+ +V+Y+ R K+ L +  I + G ++ I++++A +W  D Y +N+L
Sbjct: 182 EEPHIEIYCYEGGIKEYVAYMCREKETLHKDIIYVSGEKNGINLEVAFQWCIDAYTDNIL 241

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F NNI   DGG HL GL++ LTR + +   K    K+++ ++ G++ REG T+V+S+K+
Sbjct: 242 GFANNIRTIDGGPHLKGLKAVLTRTLNNVARKRNKIKENEPNLAGENVREGLTAVISVKV 301

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P F  QTK KL ++EVR +V+S V + L+ +LE++P  A  I++K + A    +AARR
Sbjct: 302 PEPEFEGQTKTKLGNTEVRGIVDSLVGETLNEYLEQNPQVADTIIEKAVQAYKAAEAARR 361

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           ARDL RRK VL+ + LPGKLADCSERDP++
Sbjct: 362 ARDLVRRKSVLESSPLPGKLADCSERDPER 391


>gi|13358822|dbj|BAB33157.1| DNA gyrase B subunit [Porphyromonas gingivalis]
          Length = 478

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 227/472 (48%), Positives = 309/472 (65%), Gaps = 10/472 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS++L+  + R G I+   F  G   + + V GS    T
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSTYLRAEVYRNGKIHMQEFSCGKPLHDVEVIGSTE-RT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMF 224
           GT + F P S IFSV ++ Y  L  RLRELS+LN+ + ++L DKR+ +      ++    
Sbjct: 60  GTTIQFKPDSSIFSVTEYQYSILAKRLRELSYLNAGITLTLTDKRTLKEDGSGYKQDVFR 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ FV +LDR K+PL+ + I I   +  I +++AM +N  Y ENV  + N+I   +
Sbjct: 120 SEEGLKEFVRHLDRMKEPLVDNVIHIVTEKQGIPVEVAMTYNTSYLENVYSYVNDINTIE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R  LTR +  Y   S    K K  + GDD REG T+V+SIK+ +P+F  QTK
Sbjct: 180 GGTHLAGFRRGLTRTLKKYATDSKLLDKVKVEITGDDFREGLTAVISIKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++EV   V+  V++ L  +LEEHP EAK+IV KV+ A+  R AAR+AR++ +RK  
Sbjct: 240 TKLGNNEVTGAVDMAVSEALEYYLEEHPKEAKLIVDKVVLAATARQAARKAREMVQRKSP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L    LPGKLADCS +DP++ ELFLVEGDSAGG+AKQGR RE QAILPLRGKILNVE+A 
Sbjct: 300 LSGGGLPGKLADCSSKDPEQCELFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  S+EI  + TALG  IG +        +KLRYHK++IMTDADVDG+HI TL+LTF
Sbjct: 360 QHKVFESEEIRNIYTALGVTIGTEEDSKALNLSKLRYHKVVIMTDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           FFR M +LI NG+++I  PPLY   +GK  +Y   E+  + ++   +   E 
Sbjct: 420 FFRNMRTLIENGYVFIATPPLYLCKKGKEQEYCWTEQQRQAFVDRYADGNES 471


>gi|9971331|dbj|BAB12472.1| DNA gyrase B subunit [Cellulophaga lytica]
          Length = 474

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 214/463 (46%), Positives = 303/463 (65%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G   ++T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNHLKATVFREGKIWEQEYSKGKALYPVKSIGDT-DET 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF P   IF+    ++Y+TL  R+REL++LN  V I++ DKR      E      F
Sbjct: 60  GTIVTFYPDDTIFTQTTEYSYETLSSRMRELAYLNKGVTITITDKRVTDEKGEFLSEVFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD +++ L++  + ++G ++ I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIKFLDGNREQLIREVVSMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S   +K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADASGMLEKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEE+P +AK+IV+KV+ A+  R AA +AR++ +RK V
Sbjct: 240 TKLGNREVSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+D  K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  LI  G +YI  PPLY + +G   +Y   ++  ++  
Sbjct: 420 FFRFMRELIEAGHIYIATPPLYLVKKGTKKRYAWSDKERDEIA 462


>gi|119369946|gb|ABL67987.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/421 (58%), Positives = 318/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHA GKF+  SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAAGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GRGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+III+TDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIITDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|119369916|gb|ABL67972.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 268/421 (63%), Positives = 316/421 (75%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF Q +YKVSGGLHGVGVSVVNALS WL+LRI R G  ++M F +G   
Sbjct: 1   EVIMTVLHAGGKFEQNAYKVSGGLHGVGVSVVNALSEWLELRIWRSGQEHKMRFHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL + G A    GTEVTFLPS   F+  +F+Y TL+HRLREL+FLNS V I L D+R  
Sbjct: 61  APLALVGPANGKRGTEVTFLPSPRTFTKTEFDYATLEHRLRELAFLNSGVTIRLSDQRGV 120

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E +E  + Y+GG+EAFV YLDR K  L+ +P+ I G RD I+++ A+ WND YHE++LCF
Sbjct: 121 EKKESKLHYEGGLEAFVRYLDRAKNGLIPAPLLITGERDGITVEAALSWNDSYHESMLCF 180

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR +  Y E S  +KK+K  + GDDCREG T VLS+K+P 
Sbjct: 181 TNNIPQRDGGTHLAGFRAALTRVVIKYAEDSGIAKKEKVQISGDDCREGLTCVLSVKVPG 240

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR VVES       A       + K    + L     R+AAR+AR
Sbjct: 241 PKFSSQTKDKLVSSEVRPVVESVAATRSDAGSRSIQAKLKPKSARWLRQPPAREAARKAR 300

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG  D ASLPGKLADC ERDP K ELF+VEGDSAGGSAKQ R+R NQA+LPLRGK
Sbjct: 301 ELTRRKGAFDSASLPGKLADCQERDPAKCELFIVEGDSAGGSAKQARNRNNQAVLPLRGK 360

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS  I TLITALGT +G + F+  KLRYHKIIIMTDADVDG+HIRTL
Sbjct: 361 ILNVERARFDKMLSSDAIATLITALGTSVGPEEFNPEKLRYHKIIIMTDADVDGSHIRTL 420

Query: 517 L 517
           L
Sbjct: 421 L 421


>gi|2196834|gb|AAB80834.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/422 (58%), Positives = 327/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L   GKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G   
Sbjct: 1   EVIMTVLRPLGKFDHNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A  +TGTE+ F PS + F+  +F+Y+ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  EPIKEIGEAT-NTGTEIRFWPSQETFTDTEFHYELLAKRIRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI+AF+ YL+R+K P+ +        R++ I++++AM+WNDG+ E++ C
Sbjct: 120 KD--ELFHYEGGIKAFLKYLNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGFQESIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAALTRNLNNYMEKEGFNKKGKTNATGDDAREGLTAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D +K RYHKIII TDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDVYDPDKTRYHKIIIRTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|2267056|gb|AAB63493.1| gyrase B subunit [Marinomonas communis]
          Length = 422

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/425 (57%), Positives = 315/425 (74%), Gaps = 7/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I++ G +YE  + +G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSETVTLTIRKNGKVYEQHYAHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ-ISLIDKRS 215
            PL V G + +  GT V F PS++ FS   F YD L  RLR           I L D+R+
Sbjct: 61  APLAVIGES-DGKGTTVHFKPSAETFSNILFVYDILAKRLRGAVIPELWCSAIHLKDERT 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI---QGSRDNISIDLAMRWNDGYHEN 272
            +    +  YKGG+++FV +L+ +K+P+      I   +  ++ I++ LA++WN+G+ +N
Sbjct: 120 GKE--KSFNYKGGLKSFVEHLNTNKQPINDIFHFICQRENLKNGIAVKLALQWNEGFQKN 177

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           + C+TNNIPQ+DGGTHL+G R ALTR + +++E    +KK K +  GDDCREG T+++S+
Sbjct: 178 IYCYTNNIPQRDGGTHLAGFRGALTRTLNNFIEAEGLAKKQKVATTGDDCREGLTAIVSV 237

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV++ VE  ++   + +L E P EAK IV K+LDA+  R+AA
Sbjct: 238 KVPDPKFSSQTKDKLVSSEVKTAVEQEMSKRFAEFLLEKPNEAKTIVNKMLDAARAREAA 297

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           RRARD+TRRKG LDIA LPGKL DC E+DP  SE++LVEGDSAGGSAKQGR R  QAILP
Sbjct: 298 RRARDMTRRKGALDIAGLPGKLLDCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILP 357

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVE+ARFDKMLSS E+GTLITALG GIG+D F+ +KLRYH I+IMTDADVDG+H
Sbjct: 358 LKGKILNVEKARFDKMLSSAEVGTLITALGCGIGRDEFNADKLRYHSIVIMTDADVDGSH 417

Query: 513 IRTLL 517
           IRTLL
Sbjct: 418 IRTLL 422


>gi|88824769|gb|ABD52430.1| gyrase B [Proteus mirabilis]
          Length = 414

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 258/417 (61%), Positives = 324/417 (77%), Gaps = 4/417 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R+G I++  + +G+ D+ L V
Sbjct: 1   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIHRDGKIHQQIYRSGVPDDRLKV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G   + +GT V F PS D F    +F YD L  RLRELSFLNS V I LIDKR  + RE
Sbjct: 61  IGET-DKSGTFVRFWPSLDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKR--DNRE 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+AFV YL R+K P+ Q+       +D I +++AM WNDG+ ENV CFTNNI
Sbjct: 118 DHFHYEGGIKAFVEYLSRNKTPIHQNVFYFSTEKDGIGVEVAMLWNDGFQENVYCFTNNI 177

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL G R+A+TR + +Y++K   +KK K S  GDD REG  +V+S+K+PDP+FS
Sbjct: 178 PQRDGGTHLVGFRTAMTRTLNNYMDKEGFNKKSKISATGDDAREGLIAVISVKVPDPKFS 237

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TR
Sbjct: 238 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTR 297

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG LD+  LPGKLADCSERDP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNV
Sbjct: 298 RKGALDLGGLPGKLADCSERDPAFSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNV 357

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           E+ARFDKML+SQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLL
Sbjct: 358 EKARFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 414


>gi|148971349|gb|ABR20212.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 236/424 (55%), Positives = 306/424 (72%), Gaps = 6/424 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ +YKVSGGLHGVGVSVVNALS  LK+ + REG I+  S+  G  +
Sbjct: 1   EVIMTVLHAGGKFDKGAYKVSGGLHGVGVSVVNALSEQLKVEVYREGKIWTQSYKRGKPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+  TG    D GT VTF P SDI S   F+YD L +RLRE++FLN+  +I++ID+   
Sbjct: 61  GPVEATGKT-QDHGTRVTFKPDSDISSETKFSYDILSNRLREIAFLNAGAKITIIDEHDD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI  FV +L+ +KKPL   PI    S+++  +D A++ N+ Y ENV  F
Sbjct: 120 KKHT--FHYEGGISQFVRFLNANKKPLHSEPISASKSKEDTVVDFAIQHNEDYSENVFSF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N+I   +GGTHL+G RSALTR I  Y++K    K    +V GDD REG  +V++IK+P+
Sbjct: 178 VNDIKTPEGGTHLAGFRSALTRVINDYIKKYDLLKGKNFTVTGDDVREGLCAVIAIKIPN 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL + EV  +V+S V + L  + EE+P  AK I +K + A+  R+AA++AR
Sbjct: 238 PQFEGQTKTKLGNQEVEGLVKSIVGESLGIFFEENPATAKAISQKAIAAAEAREAAKKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKGVLD +SLPGKLADC ERDP++SELF+VEGDSAGGSAKQGR R  QAILP++GK
Sbjct: 298 DLTRRKGVLDGSSLPGKLADCQERDPERSELFIVEGDSAGGSAKQGRDRVFQAILPIKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGI---GQDSFDINKLRYHKIIIMTDADVDGAHI 513
           ILNVE+AR  K+LS++E+ TLI A+GTGI   G + F + KLRYHK+IIMTDADVDG+HI
Sbjct: 358 ILNVEKARLVKILSNEEVRTLIAAIGTGIGSEGDEGFKLEKLRYHKLIIMTDADVDGSHI 417

Query: 514 RTLL 517
           RTLL
Sbjct: 418 RTLL 421


>gi|148971411|gb|ABR20243.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 245/421 (58%), Positives = 314/421 (74%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L LRI+R G +YE  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSERLFLRIRRSGALYEQEYRMGEPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS+ +F+   F+Y+ L +R+RE+SFLNS V+I   D+R+ 
Sbjct: 61  YPIRKIGEAT-GTGTEIRFQPSTQVFTETQFDYEVLANRIREISFLNSGVKIYXADERNE 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             R+   + +GGI AFV YL+R++  L  S     G    I +++A++W   Y E V CF
Sbjct: 120 --RQELFYVEGGIRAFVEYLNRNRTALHSSVCHFVGEEAGIGVEVALQWTKSYQETVFCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNN+PQ+DGGTHL+G RSALTR +  ++E++  ++K+K  V GDD REG T+V+S+++PD
Sbjct: 178 TNNLPQRDGGTHLTGFRSALTRTLVGFLEETGHARKEKVQVTGDDAREGLTAVVSVRVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VVE  V + L  +L EHP E + I +K++DA+  R+AARRAR
Sbjct: 238 PKFSSQTKDKLVSSEVKPVVEGLVAEKLREFLWEHPAEGRQIAEKMMDAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LDIA LPGKLADC E+DP   ELFLVEGDSAGGSAKQ R R +QA+LPL+GK
Sbjct: 298 DLTRRKGALDIAGLPGKLADCQEKDPSLCELFLVEGDSAGGSAKQARDRRHQAVLPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           I+NVE+A FD++LSS EI  LITALG GIG+D F+   LRYH+I+IMTDADVDG+HIRTL
Sbjct: 358 IINVEKASFDRVLSSDEITALITALGCGIGKDDFNAGNLRYHRIVIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148470207|gb|ABQ66051.1| gyrase b [uncultured bacterium]
          Length = 419

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 272/419 (64%), Positives = 331/419 (78%), Gaps = 2/419 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+Q+SYKVSGGLHGVGVSVVNALS  L+L I   G  + MSF +G  D
Sbjct: 1   EVIMTVLHAGGKFDQESYKVSGGLHGVGVSVVNALSEKLQLTIYANGKKHFMSFTHGDPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G +   TGTEVTFLPS + FS   F++ TL+HRLREL+FLNS V + L D+R  
Sbjct: 61  ERLRVVGESEGKTGTEVTFLPSKETFSFTVFDFGTLEHRLRELAFLNSGVTLILRDERHV 120

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           + +E+ + Y+GGI+AFV+YLDR K  L    I IQG ++ I +DLAM W D YHE  LCF
Sbjct: 121 DIKEVVLHYEGGIQAFVAYLDRSKNALHSPSIFIQGEKEGIIVDLAMEWTDSYHETTLCF 180

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ++GG+HL+G R ALTR I +Y  +      +K S+ G+D REG T VLS+K+PD
Sbjct: 181 TNNIPQREGGSHLAGFRGALTRTINAYAAEMGKK--EKLSLTGEDMREGLTCVLSVKVPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR VVE  V D    WLEEHPL+A+ I++++++A++ R+AAR+AR
Sbjct: 239 PKFSSQTKDKLVSSEVRPVVEGIVADKFQQWLEEHPLDAEKIIERIMEAALAREAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKGVLDIASLPGKLADC ERDP KSE+F+VEGD AGGSAKQGR R+ QAILPLRGK
Sbjct: 299 ELTRRKGVLDIASLPGKLADCQERDPAKSEIFIVEGDGAGGSAKQGRRRQYQAILPLRGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           +LNVERARFDKML S++IGTLITALG GIG+D FD+NK RYHKII+MTDADVDG+HIRT
Sbjct: 359 VLNVERARFDKMLHSEQIGTLITALGMGIGRDDFDVNKARYHKIILMTDADVDGSHIRT 417


>gi|119369996|gb|ABL68012.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 253/421 (60%), Positives = 319/421 (75%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH G KF   SYKVSGGLHGVGVSVVNALS +L L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHGGRKFGASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT + F PS+ IF+   FN+D L  RLRELSFLNS V+I LID+R  
Sbjct: 61  APLAPVGPSE-QRGTTIRFKPSAQIFTHIQFNHDILAKRLRELSFLNSGVRIELIDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E       ++GG++AFV YL+R + P+ +S    +     ++I++A++WND Y E++ C+
Sbjct: 118 ENTSDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPVTIEVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK    GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ +VE+ V+  L  +L EHP +AK I+ K+L+A+  R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCLEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH++II+TDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIITDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|13358812|dbj|BAB33152.1| DNA gyrase B subunit [Bacteroides fragilis]
          Length = 477

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 222/475 (46%), Positives = 310/475 (65%), Gaps = 9/475 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVG+S VNALS+ +  ++ R G IY+  +  G    P+   G A + T
Sbjct: 1   DKGSYKVSGGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVGIADH-T 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFY 225
           GT+  F P   IF+   ++Y  L  RLREL++LN+ ++ISL D+R        +  T + 
Sbjct: 60  GTKQQFWPDDSIFTETIYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKHETFYS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + G+  FV +++  ++ L+   I +   + NI I++A+ +N G+ EN+  + NNI   +G
Sbjct: 120 EEGLREFVRFIESSREHLINDVIYLNTEKQNIPIEVAIMYNTGFSENIHSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHLAGFRRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++EV   V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +
Sbjct: 240 KLGNNEVMGAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPM 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCS++DP+K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A +
Sbjct: 300 SGGGLPGKLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMY 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K L S+EI  + TALG  IG +      +I+KLRYHKIIIMTDADVDG+HI TL++TFF
Sbjct: 360 HKALESEEIRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           FR MP +I NG+LYI  PPLY   +GK  +Y   +   + ++       E  +  
Sbjct: 420 FRYMPQIIQNGYLYIATPPLYLCKKGKIEEYCWTDAQRQKFIDTYGGGSENAIHT 474


>gi|89901418|ref|YP_523889.1| DNA topoisomerase IV subunit B [Rhodoferax ferrireducens T118]
 gi|89346155|gb|ABD70358.1| DNA topoisomerase IV subunit B [Rhodoferax ferrireducens T118]
          Length = 656

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 199/593 (33%), Positives = 302/593 (50%), Gaps = 27/593 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              + Y   SI++LKGL+ VK+RP MY   T  ++ L H+I E LDNA DE+L G+   I
Sbjct: 4   KPTNEYSEASIRVLKGLEPVKQRPGMY---TTTDTPL-HVIQEALDNAADEALAGHGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVSGGLH 121
            V L++DGS ++ D+GRGIP  LH  E     E++ T+LHA     K    +Y  SGGLH
Sbjct: 60  RVVLHLDGSVSIEDDGRGIPFGLHPTENAPVIELVFTQLHAGGKFDKGKGGAYSFSGGLH 119

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSS 179
           GVGVSV NAL++ L+    REG +  + F  G +  PL V   A     +GT V   P +
Sbjct: 120 GVGVSVTNALATRLEATTYREGKVASLVFAGGDVIEPLRVREPAPGERKSGTTVRVWPDA 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F         L H LR  + L   V ++L+++++ E +      KGG+  ++      
Sbjct: 180 KYFETLALPMAQLVHLLRSKAVLMPGVTVTLVNEKTKETQNWLF--KGGLLDYLMQTLAG 237

Query: 240 K--KPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +   P+ +         DN          + + +        + N IP   GGTH +GLR
Sbjct: 238 ELVIPVFEGDGFADAQHDNFAEGEGASWCVAFTEDGPLVRESYVNLIPTTAGGTHEAGLR 297

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L   + S++E           ++ +D     + VLS K+ DP+F  Q KE+L S +  
Sbjct: 298 DGLFTAVKSFIELH-SLLPKGVKLMPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAV 356

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V ++V   L  WL +H    K + +    A       ++A     ++    +A LPGK
Sbjct: 357 RLVSNYVRPALELWLNQHVEYGKKLAE---LAIKAAQTRQKAGQKVEKRKGSGVAVLPGK 413

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L DC  RD   +E+FLVEGDSAGGSAK GR +E+QAILPLRGK+LN      D++ ++ E
Sbjct: 414 LTDCESRDLAYNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFANNE 473

Query: 474 IGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           I  +  A+G      +   +   LRY K+ I++DADVDG+HI+ LLLT FF+  P LI  
Sbjct: 474 IHDISVAIGIDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFKHFPKLIET 533

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           G +++ +PPL+ +      +    +++ + Y +++     I      +GV   
Sbjct: 534 GRIFVARPPLFRVDAPARGK----KQASKAYALDEGELTAILDKLRKEGVREG 582



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 7/91 (7%)

Query: 719 PCSLLDTIFSIG-RKGI-SMQRYKGLGEMNASQLWETTLNPDTRSLLRV---KITDASQA 773
             ++LD +   G R+G  S+ R+KGLGEMNA QLW+TTLNPDTR LL V    I D  Q 
Sbjct: 567 LTAILDKLRKEGVREGAWSISRFKGLGEMNAEQLWDTTLNPDTRRLLPVHLGSI-DFLQT 625

Query: 774 DDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
             LF++LMG  E   RRE ++ +     +DI
Sbjct: 626 QGLFTQLMGKGEAAARRELMELHGDAVEIDI 656


>gi|119369960|gb|ABL67994.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 258/421 (61%), Positives = 319/421 (75%), Gaps = 4/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGG+F+  +YKVSGGLHGVGVSVVNALS  LKL IKR G  YE  + +G+  
Sbjct: 1   EVIMTVLHAGGEFDDNTYKVSGGLHGVGVSVVNALSGVLKLAIKRNGQTYEQVYHDGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V+GSA   TGT V F PS   F+   F++DTL  RLRELSFLNS V+I L D+RS 
Sbjct: 61  APLQVSGSAE-GTGTRVHFWPSPQTFNNIHFSFDTLAKRLRELSFLNSGVRILLQDERS- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLC 275
             +     Y+GG+ AFV YL+ HK PL Q      +     I +++A++WNDGY E V C
Sbjct: 119 -QQGELFQYEGGLSAFVDYLNTHKTPLNQVFHFNGRAEDSGIGVEIALQWNDGYQEAVYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G R+ALTR + +Y+E+    KK+K +  G+D REG T+++S+K+P
Sbjct: 178 FTNNIPQRDGGTHLQGFRTALTRTLNTYMEREGYLKKEKINTSGEDAREGLTAIVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV   V + +N+    +L E+P   K I+ K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVTQAVATLMNERFEEYLLENPQAGKSIISKMIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LDIA LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+G
Sbjct: 298 REMTRRKGALDIAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRRMQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSS E+GTLITALG GIG+D ++ +KLRYHKIIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSAEVGTLITALGCGIGRDEYNPDKLRYHKIIIMTDADVDGSHIRT 417

Query: 516 L 516
           L
Sbjct: 418 L 418


>gi|119369978|gb|ABL68003.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 247/421 (58%), Positives = 316/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    GT V F P  ++F   +F++  L+ R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GRGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD   +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGAMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTR KG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DLTRHKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITAL TGIGQD F+  KLRYH+III+TDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALSTGIGQDEFNAGKLRYHRIIIITDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|119369968|gb|ABL67998.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 245/422 (58%), Positives = 317/422 (75%), Gaps = 2/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK-RS 215
            P+   G A    GT V F P  ++F   +F++  L+ R REL++LN  + I L  +   
Sbjct: 61  APIAAKGPAK-GRGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNRRTWG 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
           P+    ++  K G+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  
Sbjct: 120 PKKGGESITMKAGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFP 179

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+P
Sbjct: 180 FTNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVP 239

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+A
Sbjct: 240 DPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKA 299

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RDLTRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 300 RDLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKG 359

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+III+TDADVDG+HIRT
Sbjct: 360 KILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIITDADVDGSHIRT 419

Query: 516 LL 517
           LL
Sbjct: 420 LL 421


>gi|110612659|gb|ABG78292.1| GyrB [uncultured bacterium]
          Length = 409

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 249/412 (60%), Positives = 311/412 (75%), Gaps = 3/412 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G IY   +  G+   P+   G A
Sbjct: 1   GGKFDSDSYKVSGGLHGVGVSVVNALSEMLQLTIRRDGKIYYQEYQMGVPQFPIKPIGVA 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GTE+ F PS  +F   +F+YD L  RLREL+FLNS V+I+L D+R  +    T  Y
Sbjct: 61  E-SRGTEIRFKPSPQVFGDTEFHYDILAKRLRELAFLNSGVRINLHDERIGKS--DTFEY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI AFV +L+R+K PL  +       +D   ++LA++WND Y EN+ CFTNNIPQ+DG
Sbjct: 118 QGGIRAFVEHLNRNKTPLHSTVFYFCADKDKTEVELALQWNDSYQENIFCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G RSALTR +  Y+E    +KK K    GDD REG T++LS+K+ DP+FSSQTK+
Sbjct: 178 GTHLAGFRSALTRTLNQYIEAEGIAKKAKIVPTGDDAREGLTAILSVKLADPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSE++ VVES V +    +L E+P +A+ I  KV+DA+  R+AAR+AR++TRRKGVL
Sbjct: 238 KLVSSEIKGVVESVVAEKFHEFLLENPADARAIASKVIDAARAREAARKAREMTRRKGVL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D+A LPGKLADC E+DP  SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARF
Sbjct: 298 DVAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARF 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           DKMLSS E+GTLITALG GIG+D F+ +KLRYH++IIMTDADVDG+HIRTLL
Sbjct: 358 DKMLSSVEVGTLITALGCGIGRDDFNPDKLRYHRVIIMTDADVDGSHIRTLL 409


>gi|119369904|gb|ABL67966.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 420

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 241/421 (57%), Positives = 323/421 (76%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ SYKVSGGLHGVG+SVVNALS  L L IKREG  +E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGISVVNALSKKLTLSIKREGQRWEQEYATGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+  TG+    TGT + F P  ++F   +F++  LQ+R +EL+FLN +++I+L D+R  
Sbjct: 61  APIAPTGNC-RGTGTTIIFWPDPEVFESTEFSFSRLQNRFKELAFLNDNLKITLKDEREG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE T  Y+GG+ AFV+ +++ ++ +  + IR++G RD I +D A++WNDGY E+V  F
Sbjct: 120 RKREATYHYEGGVAAFVADINKGREAIHPTIIRVRGERDGIVVDAAIQWNDGYAESVYPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DG THL+G RSA+TR +++Y+++   + K+K +    D REG  ++LS+K+PD
Sbjct: 180 TNNIPQADGDTHLTGFRSAMTRAMSAYLDREGIAAKNKITADSSDMREGLAAILSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR VVE  + + L+ +L+EHP EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPVVEGIIAEALTTFLDEHPKEAQAIAAKIVEAARAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           + TRRK  +DIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 ETTRRKSAMDIANLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD++L S+EIGT+ITALGTGIG D F+  KLRYH+II+MTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRILESEEIGTMITALGTGIGPDEFNAAKLRYHRIILMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|9971377|dbj|BAB12495.1| DNA gyrase B subunit [Flexibacter aggregans]
          Length = 478

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 217/475 (45%), Positives = 304/475 (64%), Gaps = 9/475 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVSVVNALS  LK  ++REG +Y   +  G    P+   G +  + 
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSRHLKAEVRREGKLYVQEYERGKPLYPVKEDGVST-EN 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFY 225
           GT VTF     IF   D+ YD L  R+RELSFLN  +++ + D+R        +E   F 
Sbjct: 60  GTTVTFFADGQIFDELDYTYDILASRMRELSFLNKGLRLIIRDERSTDEEGNFKEDNFFS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + G+  FV +LD  ++PL++  I + G ++ + +++AM +N  Y EN+  + NNI   +G
Sbjct: 120 EIGLSEFVRFLDESREPLIEEVIHVSGEKNGVPVEVAMIYNTSYAENLHSYVNNINTHEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHLSG R  LT  +  Y ++S    K K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHLSGFRRGLTSTLKKYADESGMLDKLKFEIAGDDFREGLTAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL + EV + V   V++ LS +LEE+P +A+ I++KV+ A+  R AAR+AR++ +RK VL
Sbjct: 240 KLGNREVNAPVSQAVSEMLSDYLEENPKDARRIIEKVILAATARHAARKAREMVQRKSVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCS +DP +SE++LVEGDSAGG+AKQGR R  QAI+PLRGKILNVE+A  
Sbjct: 300 TGTGLPGKLADCSSKDPAESEVYLVEGDSAGGTAKQGRDRHFQAIMPLRGKILNVEKAMV 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  + TALG  IG +  D      KLRYHKIIIM DADVDG+HI TL+LTFF
Sbjct: 360 HKIFENEEIKNIYTALGVRIGTEDDDRALNLEKLRYHKIIIMCDADVDGSHIETLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           FR M  LI  G++YI  PPLY + +GK   Y  +++  +  +++   +       
Sbjct: 420 FRYMRELIELGYIYIATPPLYQVKKGKKSHYAWNDDQRDKLVMDMKGAGSDSSVN 474


>gi|34786913|emb|CAE46957.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 253/423 (59%), Positives = 325/423 (76%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH GGKF+  +YKVSGGLHGVGVS VNALS  ++L IKR+G I++  + +G+  
Sbjct: 1   EVIMTVLHDGGKFDDNAYKVSGGLHGVGVSXVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G    +TGT + F  S + F+  +F+Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGKTE-ETGTRIRFWXSEETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     ++GGI AFV +L+R+K P+ Q           D I+ ++AM+WNDG+ E V 
Sbjct: 119 EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTREEDGITXEVAMQWNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD+TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 ARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVDG+HIR
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVDGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|313623967|gb|EFR94068.1| DNA topoisomerase IV, B subunit [Listeria innocua FSL J1-023]
          Length = 366

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/372 (43%), Positives = 237/372 (63%), Gaps = 10/372 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNY+TL  RLRE +FL   + I L+D+R       +  ++ G++ FV Y++  K  
Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIQLVDERVG--MAESFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +  +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHP-VVSFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354

Query: 361 NDGLSAWLEEHP 372
            + L+ +L E+P
Sbjct: 355 AEHLAYFLAENP 366


>gi|119369924|gb|ABL67976.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 255/421 (60%), Positives = 322/421 (76%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH GGKF+  SYKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G   
Sbjct: 1   EVIMTVLHGGGKFDASSYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A    G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R  
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GGI AFV +L+R K  +  + I + G RD I ++ A++WN+GY E VLCF
Sbjct: 120 --REEVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGIVVEAALQWNEGYSEAVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G R ALTR +  Y+E+     K K  V G+D REG T+VLS+K+PD
Sbjct: 178 TNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLTAVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR
Sbjct: 238 PKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LDIA+LPGKLADC E+DP K E++LVEGDSAGGSAK+GR R +QAILPL+GK
Sbjct: 298 ELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKRGRDRRHQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS EIGTLITALGTGIG   FD+ KLRYH++II+TDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIITDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|9971325|dbj|BAB12469.1| DNA gyrase B subunit [Capnocytophaga canimorsus]
          Length = 480

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 215/481 (44%), Positives = 307/481 (63%), Gaps = 16/481 (3%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALSS L   + R+G I++  +  G +  P+   G      
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSSHLTAVVYRDGKIWQQEYERGKVLYPVKQVGDT-QKR 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMF 224
           GT VTF P   IF    ++ YDTL  R+REL+FLN  + I+L D    + + E +  T +
Sbjct: 60  GTTVTFQPDDLIFQQTLEYKYDTLATRMRELAFLNRGITITLTDKREREENGEFKSETFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ YLD ++  ++ + I ++G ++ I +++AM +ND Y EN+  + NNI   +
Sbjct: 120 SENGLKEFIRYLDGNRPAIISNVIAMEGEKNEIPVEVAMVYNDSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKK------DKRSVIGDDCREGFTSVLSIKMPDPR 338
           GGTHL G R  LTR +  Y + S   +K      +   + G+D REG T+++S+K+ +P+
Sbjct: 180 GGTHLEGFRRGLTRTLKKYADSSGLLEKMSKDKKNPVQISGEDFREGLTAIVSVKVAEPQ 239

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +SEV +VV   V++ L A+LEEHP +AK+IV+KV+ A+  R AAR+AR+L
Sbjct: 240 FEGQTKTKLGNSEVLAVVSQAVSEMLEAYLEEHPNDAKVIVEKVIIAAQARHAARKAREL 299

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            +RK V+    LPGKL+DCSE++P+  E+FLVEGDSAGG+AKQGR R  QAILPL+GKIL
Sbjct: 300 VQRKTVMSGGGLPGKLSDCSEQNPELCEIFLVEGDSAGGTAKQGRDRNFQAILPLKGKIL 359

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIR 514
           NVE+A   K+  S+EI  + TALG  IG +         KLRYHK++IM DADVDG+HI 
Sbjct: 360 NVEKAMHHKVFDSEEIKNIFTALGVTIGTEDDAKALNLEKLRYHKVVIMCDADVDGSHIT 419

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           TL+LTFFFR M  LI  G++YI  PPLY + +G    Y  +++  +           I+ 
Sbjct: 420 TLILTFFFRYMRDLIEKGYVYIATPPLYLVKKGNKKAYAWNDKERDALSEEYGQGTNIQR 479

Query: 575 F 575
           +
Sbjct: 480 Y 480


>gi|56409810|emb|CAH65714.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 253/423 (59%), Positives = 322/423 (76%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH GGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR+G I++  + +G+  
Sbjct: 1   EVIMTVLHGGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G    +TGT + F PS + F+  +F+Y+ L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGKTE-ETGTRIRFWPSEETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     ++GGI AFV +L+R+K P+ Q           D I++++AM+WNDG+ E V 
Sbjct: 119 EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTREEDGITVEVAMQWNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR +T++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRGALTRTLTNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKXKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD+TRRKG LD+A LPGKLAD  E+DP  SEL++VEGDSAGGSA QGR R+NQAILPL+
Sbjct: 299 ARDMTRRKGALDLAXLPGKLADXQEKDPALSELYIVEGDSAGGSAXQGRXRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKIL VE+ RFDKMLSSQE+ TLITALG GIG+D  + +KLRYH IIIM DADVDG+HIR
Sbjct: 359 GKILXVEKXRFDKMLSSQEVATLITALGCGIGRDEXNPDKLRYHNIIIMXDADVDGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|148470224|gb|ABQ66059.1| gyrase b [uncultured bacterium]
          Length = 424

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 232/426 (54%), Positives = 304/426 (71%), Gaps = 7/426 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVS VN LS   ++ I R G+ YE  +  GI  
Sbjct: 1   EVIMTVLHAGGKFDASTYKVSGGLHGVGVSCVNGLSEQFEVEIWRGGHTYEQEYARGIPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS- 215
           + L  TG      GT+V FLP   IF+V ++NYDTL  RLREL+FLN  ++ISL D+R+ 
Sbjct: 61  DKLHQTG-TSKKRGTKVHFLPDKTIFTVTEYNYDTLAQRLRELAFLNKGLEISLTDERTT 119

Query: 216 ----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
                E +     Y GGI  F+ +L+R K+ L   PI ++  RDN+ +++AM++NDGY E
Sbjct: 120 DPKTGEAKHTEFKYSGGIAEFIKHLNRGKQTLHDKPIYMEAERDNVVMEIAMQYNDGYSE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F NNI   DGGTHLSG R+ALTR I +  ++    K  K ++ GDD REG  +V+S
Sbjct: 180 TVFTFANNINTVDGGTHLSGFRTALTRTINAAGQQMGLFKDLKENLSGDDVREGLVAVIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P P+F  QTK KL +S++  +V+SF+N+ L  +LE++P   + I+ K ++AS  R+A
Sbjct: 240 VKLPQPQFEGQTKGKL-NSDISGIVQSFLNERLGMFLEQNPPITRRIINKAIEASRAREA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+ARDLTRRKG LD   LPGKLADCSER P++ EL+LVEG+SAGG+AKQGR R  QAIL
Sbjct: 299 ARKARDLTRRKGALDGGGLPGKLADCSERRPERCELYLVEGESAGGTAKQGRDRRYQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PL+GKILNVE+AR+DKML  +EI  +ITALG GIG++ FD +KLRY K+I+MTDADVDG+
Sbjct: 359 PLKGKILNVEKARYDKMLGHEEIRAMITALGCGIGKEDFDASKLRYGKLILMTDADVDGS 418

Query: 512 HIRTLL 517
           HIRTL 
Sbjct: 419 HIRTLA 424


>gi|313625793|gb|EFR95411.1| DNA gyrase subunit B [Listeria innocua FSL J1-023]
          Length = 386

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 171/387 (44%), Positives = 248/387 (64%), Gaps = 9/387 (2%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVHESASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L++ + REG  Y   F  G +   + V G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IF+    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVK 380
           S+ +   ++ L+ ++ E+P  AK IV+
Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVE 385


>gi|148470296|gb|ABQ66095.1| gyrase b [uncultured bacterium]
          Length = 431

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 227/434 (52%), Positives = 309/434 (71%), Gaps = 16/434 (3%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++KSYKVSGGLHGVG+SVVNALS  L + I R+G++Y  S+  G+  
Sbjct: 1   EVIMTVLHAGGKFDKKSYKVSGGLHGVGISVVNALSKRLDMEIYRDGHVYRQSYSKGVPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L          GT VTF P  +I     F++D L +RLREL+FLN+ + I++ID+ + 
Sbjct: 61  GKLEQCEKTT-KRGTSVTFSPDDEIMEDNSFDFDILSNRLRELAFLNAGIHINIIDEINN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +  +    Y GGI++FV Y++++K  +++ PI I   +D++  ++++++NDGY E +  +
Sbjct: 120 KSHD--FKYDGGIKSFVEYINQNKSVIIKEPILISAKKDDVITEISLQYNDGYSEILYSY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYV-------EKSFGSKKDKRSVIGDDCREGFTSV 329
            NNI  K+GGTHL+G +SALTR I +Y        +   G + +   + GDD REG  +V
Sbjct: 178 VNNINTKEGGTHLAGFKSALTRVIDNYYTANLANFKDRGGKRNEVIQISGDDVREGLIAV 237

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +SIKMP+P+F  Q K KL +S V+ VVES VN+ L+ + +E+P  AKIIV+K LDAS  R
Sbjct: 238 ISIKMPNPQFEGQIKAKLGNSFVKGVVESLVNEKLTEFFDENPPVAKIIVEKALDASRAR 297

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           +AAR+A++L RRKG+LD +SLPGKLADC E+DP + E+++VEGDSAGGSAKQGR R+ QA
Sbjct: 298 EAARKAKELVRRKGLLDFSSLPGKLADCQEKDPSQCEIYIVEGDSAGGSAKQGRDRKYQA 357

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI------GQDSFDINKLRYHKIIIM 503
           ILPL+GKILNVE+AR +KML S+EI  LIT LG GI       +  F++ KLRYHKIIIM
Sbjct: 358 ILPLKGKILNVEKARLEKMLGSEEIKILITTLGGGITSGSKKEESFFNLEKLRYHKIIIM 417

Query: 504 TDADVDGAHIRTLL 517
           TDADVDG+HIRTLL
Sbjct: 418 TDADVDGSHIRTLL 431


>gi|10039311|dbj|BAB13316.1| DNA gyrase B subunit [Flexibacter flexilis]
          Length = 477

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 226/468 (48%), Positives = 307/468 (65%), Gaps = 10/468 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK+ ++REG ++E  +  G     +   G + +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTHLKVTVQREGKMFEQEYSIGKPLYSVREIGKS-DKH 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----ITMFY 225
           GT V F P + IFS  ++ Y+T+  RLRELSFLN  ++ISL D R  +  +         
Sbjct: 60  GTTVEFHPDATIFSTTEYKYETIATRLRELSFLNRGIRISLTDLREKDENDNPITEEFHS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + G+  FV YLD  ++ L+   I ++G +  I + +AM +N  Y ENV  + NNI   +G
Sbjct: 120 EAGLIEFVEYLDSTREKLIPEVIYMEGDK-VIPVQVAMHYNTSYSENVFSYVNNINTIEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R+ALTR +  Y +K     K K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 179 GTHVAGFRAALTRTLKGYADKEGMLDKVKIDIAGDDFREGLTAVISVKVAEPQFEGQTKT 238

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +S+V   V + V D L  WLEEHP EA+ IV KV+ A+  R AAR+AR++ +RK VL
Sbjct: 239 KLGNSDVSGAVSTTVADILQTWLEEHPKEARQIVNKVILAAQARHAARKAREMVQRKNVL 298

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCSE D    E++LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A+ 
Sbjct: 299 SGTGLPGKLADCSETDASLCEVYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAQE 358

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  +ITALG   G+D      +++KLRYHKIIIMTDADVDG+HIRTL+LTFF
Sbjct: 359 YKIYENEEIKNMITALGVQFGKDGDEKALNMDKLRYHKIIIMTDADVDGSHIRTLILTFF 418

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FR M  LI +G+LYI  PPLY + +GK  +Y   E+  +  +   +  
Sbjct: 419 FRYMKQLIEHGYLYIALPPLYQVKKGKDFRYCWSEDQRDIAIKELAKE 466


>gi|23978272|dbj|BAC21122.1| DNA gyrase B subunit [Pleurocapsa sp. PCC 7314]
          Length = 393

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 175/392 (44%), Positives = 251/392 (64%), Gaps = 4/392 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L G+   I V +N DGS TV+D+GRGIPT +H + G SA 
Sbjct: 2   GPKGLHHLVYEVVDNSIDEALAGFCTHIEVDINPDGSITVTDDGRGIPTGIHHKTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVGVSVVNALS  +++ + R+  I+   +  G   
Sbjct: 62  ETVMTVLHAGGKFGDGGYKVSGGLHGVGVSVVNALSKLVEVTVWRDKKIHLQRYERGKPQ 121

Query: 157 NPLVV--TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDK 213
             L           TGT V F+P   IF+    F Y+ L  RL+EL++LN+ ++I+  D 
Sbjct: 122 GKLATDPNKDDPKRTGTSVHFVPDETIFTETTVFEYEILAKRLKELAYLNAGIKITFTDN 181

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHEN 272
           RS E  +    Y+GGI+ +V Y+   K PL Q  I +   +  +++++A++W  D Y +N
Sbjct: 182 RSEEIHQDIFCYEGGIKEYVEYMTPEKDPLHQDIIYVNKEKKGVTVEVALQWCIDSYSDN 241

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +L F NNI   DGGTHL GL++ LTR + S+  K    K ++ ++ G++ REG T V+S+
Sbjct: 242 LLGFANNIRTIDGGTHLEGLKTVLTRTMNSFARKRNKIKDNESNLGGENVREGLTGVVSV 301

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP F  QTK KL ++EVR +V+S V + L+ +LE +      I+ K L++    +AA
Sbjct: 302 KVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLNDYLEFNLSVGDAIIDKALESFXAAEAA 361

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           R AR+L RRK VL+ + LPGKL+DCS RDP++
Sbjct: 362 RHARELVRRKSVLESSPLPGKLSDCSSRDPEE 393


>gi|56409820|emb|CAH65719.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 251/423 (59%), Positives = 320/423 (75%), Gaps = 4/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH GGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR+G I++  + +G   
Sbjct: 1   EVIMTVLHGGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G     TGT + F PS + F+  +F+Y+ L  RLRELSFLNS V I+L D+R  
Sbjct: 61  APLAGIGKTE-QTGTRIRFWPSEETFTNXEFHYEILAKRLRELSFLNSGVSINLTDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           E +     ++GGI AFV +L R K P+             D I++++ M+ NDG+ E V 
Sbjct: 119 EXKSDHFMFEGGIRAFVEHLXRKKTPIAXRIFFFXXXREEDGITVEVPMQXNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CF NNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+
Sbjct: 179 CFXNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGXSKKAQAATSGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARD+TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 ARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVDG+HIR
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMXDADVDGSHIR 418

Query: 515 TLL 517
           TLL
Sbjct: 419 TLL 421


>gi|332653604|ref|ZP_08419349.1| DNA gyrase, B subunit [Ruminococcaceae bacterium D16]
 gi|332518750|gb|EGJ48353.1| DNA gyrase, B subunit [Ruminococcaceae bacterium D16]
          Length = 661

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/665 (26%), Positives = 307/665 (46%), Gaps = 29/665 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     +SY  +SI  LKG D V+KRP +  G  DG  G  H ++E++ NAIDE+ EG+
Sbjct: 1   MAQK--KASYGNESISALKGADRVRKRPGVIFGS-DGLEGCEHAVFEIMSNAIDEAREGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSG 118
             +ITVT  +D S  V D GRG P D +++E     E++   L+AGGK+  +  +Y+ S 
Sbjct: 58  GSLITVTRFLDKSIQVEDQGRGCPVDWNEKEQKYNWELVFCELYAGGKYGGDGDNYEYSL 117

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLP 177
           GL+G+G       S +    I R+G  Y + F  G     L       G  TG+   + P
Sbjct: 118 GLNGLGSCATQYASEFFDATIWRDGFKYSLHFEKGENVGGLKKEPTDRGKKTGSTFRWKP 177

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-PEPREITMFYKGGIEAFVSYL 236
             ++F+  D   D     ++  + +N+ V     ++ +  +       Y+ GI  +V+ L
Sbjct: 178 DLEVFTDIDIPVDYYTDVMKRQAVVNAGVTFRFKEETTPGKFTTTDFQYENGILDYVTEL 237

Query: 237 DRHKKPLMQSPIRIQ------GSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHL 289
                       + +        +    + L++ +      + V  + N+   + GG+  
Sbjct: 238 AGEDPLTQPVFWQTERKGRDRDDKPEYKVKLSVSFCFSNRVSLVEHYHNSSWLEHGGSPE 297

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
             ++SA    I +Y+++    +K++  +  +D ++    V +       + +QTK+ + +
Sbjct: 298 KAMKSAFVSAIDAYLKQQGKYQKNEAKITFNDVQDALVLVSNNFSTQTSYENQTKKAINN 357

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDI 407
             V+  +  F+   L  +  E+P +A+ I ++VL     R+ A R R   ++K  G +DI
Sbjct: 358 KFVQEAMTEFLRSQLEVYFIENPFDAQKIAEQVLVNKRSRETAERTRLNIKKKLTGSMDI 417

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++   K   C  +D ++SEL++VEGDSA GS K  R  E QAI+P+RGKILN  +A + K
Sbjct: 418 SNRVQKFVPCRTKDIERSELYIVEGDSALGSVKLARDGEFQAIMPIRGKILNCLKADYGK 477

Query: 468 MLSSQEIGTLITALGTGIGQDS--------FDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           +  S  I  L+  LG G+            FD+  LR++KI+I TDADVDG  IRTL+LT
Sbjct: 478 IFKSDIITDLLKVLGCGVEVHDKRAKDLATFDLANLRWNKIVICTDADVDGFQIRTLVLT 537

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             +R  P+LI  G++YI + PLY IT  +   +   ++   D +      +         
Sbjct: 538 MLYRLTPTLIQQGYVYIAESPLYEITCKEKTWFAYSDKEKNDIVATLEGKKYDIQRSKGL 597

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           G    + +         ++   +       +     A +  +   +        +A    
Sbjct: 598 GENEPDMMW-----LTTMNPATRRLIKVMPEDVERTAQVFDLLLGDDLAGRKNHIADNGY 652

Query: 640 NRLNF 644
             L  
Sbjct: 653 KYLEL 657



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 127/370 (34%), Gaps = 46/370 (12%)

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
                +K + S  +  +   L    G+   +  K+ ++ +    DA V  ++      T 
Sbjct: 292 HGGSPEKAMKSAFVSAIDAYLKQQ-GKYQKNEAKITFNDV---QDALVLVSN-NFSTQTS 346

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           +  Q    I+N F+               + ++++    +       +++      +   
Sbjct: 347 YENQTKKAINNKFVQEAMTEFLRS--QLEVYFIENPFDAQKIAEQVLVNKRSRETAERTR 404

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDK---TFIEQAVISGVFNCESDQEINVSLASK 637
           +  K  L   +D + ++ K +     + ++     +E     G      D E   ++   
Sbjct: 405 LNIKKKLTGSMDISNRVQKFVPCRTKDIERSELYIVEGDSALGSVKLARDGEF-QAIMPI 463

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF---- 693
               LN +     K +   I    + V      V ++   + ++      ++ +I     
Sbjct: 464 RGKILNCLKADYGKIFKSDIITDLLKVLGCGVEVHDKRAKDLATFDLANLRWNKIVICTD 523

Query: 694 ---------SNRIEENYLTILSLICNGDKIKITGPC-------------------SLLDT 725
                    +  +   Y    +LI  G       P                     ++ T
Sbjct: 524 ADVDGFQIRTLVLTMLYRLTPTLIQQGYVYIAESPLYEITCKEKTWFAYSDKEKNDIVAT 583

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           +   G+K   +QR KGLGE     +W TT+NP TR L++V   D  +   +F  L+GD++
Sbjct: 584 L--EGKK-YDIQRSKGLGENEPDMMWLTTMNPATRRLIKVMPEDVERTAQVFDLLLGDDL 640

Query: 786 EPRREFIQEN 795
             R+  I +N
Sbjct: 641 AGRKNHIADN 650


>gi|119369918|gb|ABL67973.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 256/421 (60%), Positives = 315/421 (74%), Gaps = 2/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I  +G  +   +  G   
Sbjct: 1   EVIMTVLHAGGKFDGSGYKVSGGLHGVGVSVVNALSDILLLDIFLDGKHHHQEYRMGDPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL V G A    GT V F PS+ IF+  +F+YD L  RLRELSFLN  V+I L ++ + 
Sbjct: 61  SPLAVAGEANGRRGTLVRFYPSAKIFTNLEFHYDILARRLRELSFLNPGVRIVLREETTG 120

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    YKGGI+AFV YL+++K  +  S + ++  +D + ++ A++WND Y ENV CF
Sbjct: 121 --REDVYEYKGGIKAFVEYLNKNKSSIHDSILYMEVEQDGVMVEAALQWNDSYTENVFCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R+ALTR +  ++E     KK+K S+IGDD REG T+VLS+K+ D
Sbjct: 179 TNNIPQKDGGTHLTGFRNALTRVLGDHLETEGYVKKEKISMIGDDTREGLTAVLSVKVRD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV  VV + V + L  +L E+P EAK++  KV +A+  R+AAR+A+
Sbjct: 239 PKFSSQTKEKLVSSEVTPVVSTIVGERLKDFLLENPREAKLVAAKVCEAARAREAARKAK 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +L RRK VLDIA LPGKLADC E+DP KSELFLVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 299 ELNRRKSVLDIAGLPGKLADCQEKDPAKSELFLVEGDSAGGSAKQGRDRHFQAILPLKGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+AR +KMLSSQE+ TLITA+G GIG+D F   KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 359 ILNVEKARLEKMLSSQEVATLITAMGCGIGKDDFKPEKLRYHRIIIMTDADVDGSHIRTL 418

Query: 517 L 517
           L
Sbjct: 419 L 419


>gi|313115468|ref|ZP_07800933.1| DNA gyrase, B subunit, carboxyl terminus [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622178|gb|EFQ05668.1| DNA gyrase, B subunit, carboxyl terminus [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 663

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 180/664 (27%), Positives = 310/664 (46%), Gaps = 30/664 (4%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   Y  +SI  LKG D V+KRP++  G  DG  G  H I+E++ N+IDE+ +G+ D I 
Sbjct: 3   KKQEYGNESITSLKGADRVRKRPAVIFGS-DGVEGCAHSIFEIVSNSIDEARDGHGDTIN 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGV 123
           VT   DGS  V D GRG+P D +  EG    E++   ++AGGK+   + +Y+ S GL+G+
Sbjct: 62  VTRCKDGSVIVEDFGRGMPVDWNNGEGRYNWELLFCEMYAGGKYGEGEDNYEFSLGLNGL 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+      S+W+   I R+G  Y + F  G     L      G  TG+ + + P  ++F+
Sbjct: 122 GLCATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEAYKGRRTGSIIHWKPDDEVFT 181

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDR 238
             D      +  LR  + +N+ + ++  D++     + +    +  Y+ GI  +V+ +  
Sbjct: 182 DIDVPGSYYKDTLRRQAVVNAGLTLNFTDEKEKDPATGKAWYESWCYEHGIADYVAEVAG 241

Query: 239 HK--KPLMQSPIRIQGSRDNISIDLAMRWNDGYH-----ENVLCFTNNIPQKDGGTHLSG 291
                P+        G       D  +R +  +      + +  + N+   + GG+    
Sbjct: 242 EDTLTPVFSCESEASGRDREDQPDYKVRMSAAFCFSNKVQMLEYYHNSSWLEHGGSPEHA 301

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           +R+A   QI  Y+++    KK + ++   D ++    V S       + +QTK+ + +  
Sbjct: 302 VRTAFVYQINKYLKEKNLYKKGESAISFQDVQDCLVYVSSSFSTRTSYENQTKKAITNKF 361

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI--AS 409
           V   +  F+   L  +  E P EA+ I ++VL     R+ A + R   ++     I  A+
Sbjct: 362 VSQAMTDFLKHYLEVYFLEKPDEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQIDLAN 421

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
              K  DC  +D  + EL++VEGDSA G+ K  R  E QAI+P+RGKILN  +A + ++ 
Sbjct: 422 RVQKFVDCRTKDASRRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKADYARIF 481

Query: 470 SSQEIGTLITALGTGI---GQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            S  I  LI  +G G+   G+ +     F+++ LR++KI+I TDADVDG  IRTL+LT  
Sbjct: 482 KSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTLVLTML 541

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +R  P+LI  G++YI + PLY IT      +   E     +L      +         G 
Sbjct: 542 YRLTPTLIEKGYVYIAESPLYEITTKDRTYFAYTEPEKAAFLEEIGEKKYTIQRSKGLGE 601

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                +         ++   +          ++ A +  +   ++       +A   A  
Sbjct: 602 NDPEMMW-----LTTMNPESRRLIKVMPTDVVQTAQVFDILLGDNLAGRKEHIAQHGAEY 656

Query: 642 LNFI 645
           L+ +
Sbjct: 657 LDDL 660



 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 107/320 (33%), Gaps = 39/320 (12%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+               + +++  +  +       ++++     + 
Sbjct: 347 TSYENQTKKAITNKFVSQAMTDFLK--HYLEVYFLEKPDEAQKICQQVLVNKQSREHAEK 404

Query: 579 KGVISKNDLRNFIDDALKIDKLIK---DFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
                K  L   ID A ++ K +          +   +E     G      D E   ++ 
Sbjct: 405 TRQSIKKTLSTQIDLANRVQKFVDCRTKDASRRELYIVEGDSAMGAVKSSRDSE-YQAIM 463

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIFS------ 684
                 LN +     + +   +    I V     +   +  +E       ++        
Sbjct: 464 PIRGKILNCLKADYARIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVIC 523

Query: 685 --FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC----------------SLLDTI 726
                   +I +  +   Y    +LI  G       P                      +
Sbjct: 524 TDADVDGYQIRTLVLTMLYRLTPTLIEKGYVYIAESPLYEITTKDRTYFAYTEPEKAAFL 583

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG K  ++QR KGLGE +   +W TT+NP++R L++V  TD  Q   +F  L+GD + 
Sbjct: 584 EEIGEKKYTIQRSKGLGENDPEMMWLTTMNPESRRLIKVMPTDVVQTAQVFDILLGDNLA 643

Query: 787 PRREFIQENS---LPSALDI 803
            R+E I ++    L   LD+
Sbjct: 644 GRKEHIAQHGAEYLD-DLDV 662


>gi|148971359|gb|ABR20217.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 417

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 221/422 (52%), Positives = 295/422 (69%), Gaps = 6/422 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++++YK SGGLHGVG+SVVNALS  L+L I + G IY   +  G   
Sbjct: 1   EVIMTVLHAGGKFDKEAYKFSGGLHGVGISVVNALSDKLELTIFQNGKIYYQLYHRGTPT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L V G      GT + F P  +IF     F++DTL  RLREL+FLN +++I+++D+R+
Sbjct: 61  ERLKVIGDTK-KRGTLIKFHPDPEIFQETTEFSFDTLSARLRELAFLNKNLRITIVDERT 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +  E   FY+GGI +FV ++++ K  L    I +Q   +   ++LAM++NDGY E +  
Sbjct: 120 QKKHE--FFYEGGIVSFVEHVNKTKTRLFDEVIHMQQEDEKYVLELAMQYNDGYGEQLYS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI   +GGTH+SG +SALT+            K ++ S   +D REG   V+S+K+P
Sbjct: 178 FVNNINTVEGGTHVSGFKSALTKVCNKKGTDFGILKGNE-SFSSEDVREGLVCVISMKVP 236

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +SEV+ +V+S+    L ++ EE+P  AK I++K   A   R+AA++A
Sbjct: 237 EPQFEGQTKTKLGNSEVKGIVDSWAFAFLDSYFEENPAIAKKILQKAELAKRAREAAKKA 296

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RDLTRRK VL+   LPGKLADC++ DP K+ELF+VEGDSAGGSAKQGR R +QAILPLRG
Sbjct: 297 RDLTRRKTVLESIILPGKLADCTDEDPVKAELFIVEGDSAGGSAKQGRDRTHQAILPLRG 356

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR DKMLS+++I  LI A+G GIG + FDINK RYHKII+MTDADVDG+HIRT
Sbjct: 357 KILNVEKARLDKMLSNEQIQALIAAIGCGIGNE-FDINKARYHKIILMTDADVDGSHIRT 415

Query: 516 LL 517
           LL
Sbjct: 416 LL 417


>gi|148470221|gb|ABQ66058.1| gyrase b [uncultured bacterium]
          Length = 421

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 274/421 (65%), Positives = 325/421 (77%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF Q +YKVSGGLHGVGVSVVNALS WL+LRI R G  ++M F +G   
Sbjct: 1   EVIMTVLHAGGKFEQNAYKVSGGLHGVGVSVVNALSEWLELRIWRSGQEHKMRFHDGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL + G A    GTEVTFLPS   F+  +F+Y TL+HRLREL+FLNS V I L D+R  
Sbjct: 61  APLALVGPANGKRGTEVTFLPSPRTFTKTEFDYATLEHRLRELAFLNSGVTIRLSDQRGV 120

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E +E  + Y+GG+EAFV YLDR K  L+ +P+ I G RD I++  A+ WND YHE++LCF
Sbjct: 121 EKKESKLHYEGGLEAFVRYLDRAKNGLIPAPLLITGERDGITVXAALSWNDSYHESMLCF 180

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR +  Y E S  +KK+K  + GDDCREG T VLS+K+PD
Sbjct: 181 TNNIPQRDGGTHLAGFRAALTRVVIKYAEDSGIAKKEKVQISGDDCREGLTCVLSVKVPD 240

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR VVES   D +   +     EAK +V KV++A+  R+AAR+AR
Sbjct: 241 PKFSSQTKDKLVSSEVRPVVESVAADQIGTLVRGASGEAKTVVGKVVEAAAAREAARKAR 300

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG  D ASLPGKLADC ERDP K ELF+VEGDSAGGSAKQ R+R NQA+LPLRGK
Sbjct: 301 ELTRRKGAFDSASLPGKLADCQERDPAKCELFIVEGDSAGGSAKQARNRNNQAVLPLRGK 360

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS  I TLITALGT +G + F+  KLRYHKIIIMTDADVDG+HIRTL
Sbjct: 361 ILNVERARFDKMLSSDAIATLITALGTSVGPEEFNPEKLRYHKIIIMTDADVDGSHIRTL 420

Query: 517 L 517
           L
Sbjct: 421 L 421


>gi|2353024|gb|AAB69350.1| gyrase beta subunit [Shewanella benthica]
          Length = 420

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 254/423 (60%), Positives = 326/423 (77%), Gaps = 5/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSG LHGVGVSVVNALS  L+L I+R G +YE  +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGCLHGVGVSVVNALSQKLQLTIRRNGKLYEQFYTMGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            P+   G A   TGTE+ F PS + F +  +F++D L  R+RELSFLNS V I LID+R 
Sbjct: 61  APIKEIGDAT-STGTELRFWPSHETFTNNIEFHFDILVKRVRELSFLNSGVGIRLIDER- 118

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVL 274
            + R+    Y+GGI AFV YL+ +K P+ +        RD+ I++++AM+WNDG+ EN+ 
Sbjct: 119 -DNRDEFFQYQGGISAFVDYLNVNKTPVNKDAFHFIQERDDGITVEVAMQWNDGFQENIF 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + +Y+E+   +KK K S  GDD REG T+V+S+K+
Sbjct: 178 CFTNNIPQRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLTAVVSVKV 237

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VE  + + L  +L EHP EA++IV K++DA+  R+AAR+
Sbjct: 238 PDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLMEHPNEARLIVGKIIDAARAREAARK 297

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 298 AREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLK 357

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+  LITALG GIG+D +  +K RYH I+I+TDADVDG+HIR
Sbjct: 358 GKILNVEKARFDKMLSSQEVVDLITALGCGIGRDEYHPDKTRYHNIVIITDADVDGSHIR 417

Query: 515 TLL 517
           TLL
Sbjct: 418 TLL 420


>gi|261367451|ref|ZP_05980334.1| DNA gyrase subunit B [Subdoligranulum variabile DSM 15176]
 gi|282570223|gb|EFB75758.1| DNA gyrase subunit B [Subdoligranulum variabile DSM 15176]
          Length = 659

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 188/664 (28%), Positives = 308/664 (46%), Gaps = 27/664 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y  DSI+ LKG D V+KRP++  G  DG  G  H I+E++ N+IDE+ +GY
Sbjct: 1   MAKK--QQEYGNDSIRQLKGADRVRKRPAVIFGS-DGVEGCAHSIFEIISNSIDEARDGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSG 118
            + I VTL  D    V D GRGIP D +K E     +++   L+AGGK+     +Y  S 
Sbjct: 58  GNRINVTLFPDHVVEVEDFGRGIPVDYNKAEQRWNWDLVFCELYAGGKYAEGGGNYDFSL 117

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+G+G+      S W+   I R+G  Y + F  G     L      G  TG+ + + P 
Sbjct: 118 GLNGLGLCATQYASEWMTADIYRDGFHYHLDFQKGENVGGLQKEEYKGRRTGSVIRWKPD 177

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +++F+      +T Q  LR  + +N  V +   DK   + ++    Y+ GI  + + +  
Sbjct: 178 TEVFTDIAVPPETFQDMLRRQAVVNDGVTLVFTDKSGKDTQKYEYLYEHGIADYANEIVG 237

Query: 239 HK--KPLMQSPIRIQGSRDNISIDLAMRWNDGY-----HENVLCFTNNIPQKDGGTHLSG 291
            +   P+        G       D  +R N  +      + +  + N+   + GG+    
Sbjct: 238 DEALTPVHFCSGAAVGRDRADQPDYQVRMNVAFAFSNTVQTLEYYHNSSWLEHGGSPDRA 297

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           +RSA   QI ++++     KK++ ++   D ++    V S       + +QTK+ + +  
Sbjct: 298 VRSAFVSQINAWLKSKGLYKKNESAITFSDVQDCLVLVSSSFSTRTSYENQTKKAITNKF 357

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG--VLDIAS 409
           V   +  F+   L  +  EHP EA+   K+VL     R+ A +AR   ++     +D+A+
Sbjct: 358 VAQAMTEFLKHQLEVYFIEHPDEAEKACKQVLINKQSREHAEKARITIKKTMTQQMDLAN 417

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
              K  DC  +D  + EL++VEGDSA G+ KQ R  E QAI+P+RGKILN  +A + ++ 
Sbjct: 418 RVQKFVDCRTKDASRRELYIVEGDSAMGAVKQSRDSEFQAIMPIRGKILNCLKADYARIF 477

Query: 470 SSQEIGTLITALGTGIG--------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            S  I  LI  +G G+           SF+++ LR++K++I TDADVDG  IRTL+LT  
Sbjct: 478 KSDIITDLIRVMGCGVELGGSHNKDLASFNLDNLRFNKVVICTDADVDGYQIRTLVLTML 537

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +R  P+LI+ G++YI + PLY I       +   E    D L      +         G 
Sbjct: 538 YRLTPTLINKGYVYIAESPLYEINTKNKTYFAYTEPEKADILRRIEGEKYTIQRSKGLGE 597

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                +         +    +             A +  +   ++ Q     +A   A  
Sbjct: 598 NDPEMMW-----LTTMSPESRRLIKVLPTDAERTAQVFDLLLGDNLQGRKEHIAEHGAEY 652

Query: 642 LNFI 645
           L+ +
Sbjct: 653 LDDL 656



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 110/323 (34%), Gaps = 45/323 (13%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+               + +++  +  E       ++++     + 
Sbjct: 343 TSYENQTKKAITNKFVAQAMTEFLK--HQLEVYFIEHPDEAEKACKQVLINKQSREHAEK 400

Query: 579 KGVISKNDLRNFIDDALKIDKLIK---DFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
             +  K  +   +D A ++ K +          +   +E     G      D E   ++ 
Sbjct: 401 ARITIKKTMTQQMDLANRVQKFVDCRTKDASRRELYIVEGDSAMGAVKQSRDSEF-QAIM 459

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVK---RIARGVQEQ----FVLEGSSIFS---- 684
                 LN +     + +   I    I V        G   +    F L+          
Sbjct: 460 PIRGKILNCLKADYARIFKSDIITDLIRVMGCGVELGGSHNKDLASFNLDNLRFNKVVIC 519

Query: 685 --FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP-------------------CSLL 723
                   +I +  +   Y    +LI  G       P                     +L
Sbjct: 520 TDADVDGYQIRTLVLTMLYRLTPTLINKGYVYIAESPLYEINTKNKTYFAYTEPEKADIL 579

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
             I   G K  ++QR KGLGE +   +W TT++P++R L++V  TDA +   +F  L+GD
Sbjct: 580 RRI--EGEK-YTIQRSKGLGENDPEMMWLTTMSPESRRLIKVLPTDAERTAQVFDLLLGD 636

Query: 784 EVEPRREFIQENS---LPSALDI 803
            ++ R+E I E+    L   LD+
Sbjct: 637 NLQGRKEHIAEHGAEYLD-DLDV 658


>gi|148470188|gb|ABQ66042.1| gyrase b [uncultured bacterium]
 gi|148470194|gb|ABQ66045.1| gyrase b [uncultured bacterium]
 gi|148971335|gb|ABR20205.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 213/425 (50%), Positives = 282/425 (66%), Gaps = 8/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVG SVVNALS W  + + R+G IY M F  GI  
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGASVVNALSEWTSVEVCRDGKIYNMEFERGIKT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             + V G     +GT+VTF P   IF    F+YD +  R REL++LN S+   L D+RS 
Sbjct: 61  GEIKVIGK-RQKSGTKVTFKPDPQIFPEVVFDYDRIVARCRELAYLNESLAFYLEDERSG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ----GSRDNISIDLAMRWNDGYHEN 272
           +       Y  GI  FV  L+  K  +    + ++    G  + +S+ +A+++NDGY E+
Sbjct: 120 KK--DEFKYTKGIIQFVKQLNEGKDVIHSQVVYLERAEQGKENPMSVQVAVQYNDGYAES 177

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  F NNI    GGTHLSG ++ALTR +  Y + +   K +K    GDD REG ++++S+
Sbjct: 178 LHSFANNINTPGGGTHLSGFKTALTRTLNFYAKSNNLIKDEKEMPNGDDLREGLSAIVSV 237

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+F  QTK+KL + EV   V S VN+ L  WLEEHP +AK I++K + A   R+AA
Sbjct: 238 KVPNPQFEGQTKDKLGNGEVEGFVSSAVNEALGIWLEEHPGDAKRIIQKGILARQAREAA 297

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LT RKG L    LPGKL+DCS RD + +EL++VEG SAGG+AK GR R  QAILP
Sbjct: 298 RKARELT-RKGALTSGGLPGKLSDCSSRDMESTELYIVEGQSAGGTAKAGRDRVFQAILP 356

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           ++GKILNVE+AR DKML  +EI T++ AL  GIG +  D+ KLRY K++IMTDADVDG+H
Sbjct: 357 IKGKILNVEKARVDKMLGHEEIRTIVQALACGIGANDMDMTKLRYGKLVIMTDADVDGSH 416

Query: 513 IRTLL 517
           IRTLL
Sbjct: 417 IRTLL 421


>gi|10039321|dbj|BAB13321.1| DNA gyrase B submit [Flexibacter flexilis]
          Length = 478

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 223/468 (47%), Positives = 317/468 (67%), Gaps = 9/468 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ L+  + REG I++  +  G    P+ V G   + T
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTHLRATVHREGKIFQQEYSCGAPLYPVKVVGET-DRT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFY 225
           GT + F P + IF++ ++ YDT+  RLRELS+LN  + ISL D      + +P     + 
Sbjct: 60  GTIIDFTPDASIFTITEYKYDTVASRLRELSYLNKGIHISLTDLRQTDDNGQPLGEAFYS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV YLD  ++ L+  PI ++  ++   +++A+ +N  Y ENV  + NNI   +G
Sbjct: 120 EGGLREFVEYLDSTRENLIPEPIHMESEKNGTPVEVALLYNTSYTENVFSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R ALTR + +Y ++S   +K+K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHVAGFRRALTRTLKNYADRSGILEKEKIEITGDDFREGLTAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +S+V   V++ V + L  +LEEHP EAK+IV KV+ A+  R AAR+AR++ +RK VL
Sbjct: 240 KLGNSDVMGAVDASVAEMLDTYLEEHPREAKLIVSKVILAAKARHAARKAREMVQRKNVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             + LPGKLADCSE DP   E+++VEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A+ 
Sbjct: 300 SGSGLPGKLADCSESDPAVCEIYMVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLITALGTGI----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            ++  S+EI  +ITA+G       G+ + ++ KLRYHKIIIMTDADVDG+HIRTL+LTFF
Sbjct: 360 HRIYDSEEIRNIITAMGVSFGTADGERALNLEKLRYHKIIIMTDADVDGSHIRTLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           +R M  +I NG+LYI +PPLY + +GK  +Y   EE  E  +   +  
Sbjct: 420 YRYMREIIENGYLYIAQPPLYLVKKGKEERYCWTEEQREQAVRELAKE 467


>gi|4894896|gb|AAD32647.1|AF136391_1 gyrase B [Shewanella sp. ANA-3]
          Length = 418

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 250/421 (59%), Positives = 326/421 (77%), Gaps = 4/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L   GKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E  + +G+ D
Sbjct: 1   EVIMTVLQPVGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+ V G A   TGTE+ F PS + FS  DF+++ L +R+RELSFLNS V I L+++R  
Sbjct: 61  EPIKVIGDAT-KTGTEIRFWPSEETFSDVDFHFEILANRVRELSFLNSGVGIRLVNERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY E++ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQESIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G RSALTR   +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRSALTRNFNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVS EV++ VE  + + L+ +L E+P + K+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSREVKAAVEQTMGEKLNDYLVENPADGKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLCGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRT 417

Query: 516 L 516
           L
Sbjct: 418 L 418


>gi|10039307|dbj|BAB13314.1| DNA gyrase B subunit [Capnocytophaga gingivalis]
          Length = 484

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 219/471 (46%), Positives = 310/471 (65%), Gaps = 16/471 (3%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVSVVNALS+ L   + R+G I+E  +  GI    +   G      
Sbjct: 1   DKGSYKVSGGLHGVGVSVVNALSTHLTATVFRDGKIWEQEYERGIALYQVKEKGKTE-KR 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT+VTFLP ++IF    +FNYD L +R+REL+FLN  + I+L D R  +    P   T +
Sbjct: 60  GTKVTFLPDTEIFQQTVEFNYDILANRIRELAFLNKGIHITLTDLRHQDEKGAPISQTFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G+E F+ YLD ++ P+++  I ++G ++ I +++AM +ND ++EN+  + NNI   +
Sbjct: 120 SEKGLEEFIQYLDGNRTPIIKKIIAMEGEKNEIPVEVAMIYNDSFNENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKK------DKRSVIGDDCREGFTSVLSIKMPDPR 338
           GGTHL G R  LTR + +Y +KS   +K      +   + GDD REG T+++S+K+ +P+
Sbjct: 180 GGTHLQGFRMGLTRTLKNYADKSGLLEKASKDKKNPLEISGDDFREGLTAIISVKVAEPQ 239

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV + V   V+D L ++LEE+P +AK IV KV+ A+  R AA++AR+ 
Sbjct: 240 FEGQTKTKLGNREVTAAVSQAVSDMLESYLEENPEDAKTIVNKVILAAQARLAAKKAREA 299

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            +RK  +  A LP KLADC +++P+  ELFLVEGDSAGG+AKQGR ++ QAILPLRGKIL
Sbjct: 300 VQRKSPMGGAGLPNKLADCQDKNPENCELFLVEGDSAGGTAKQGRDQKFQAILPLRGKIL 359

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIR 514
           NVE+A   ++  ++EI  + TALG  IG +      +I+KLRYHKIIIM+DADVDG+HI 
Sbjct: 360 NVEKAMQHRVFENEEIKNIYTALGVTIGTEEDAKALNISKLRYHKIIIMSDADVDGSHIA 419

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           TL+LTFFFR M  LI  G +YI  PPLY + +GK  QY   +E  +     
Sbjct: 420 TLILTFFFRYMRELIEEGHVYIATPPLYLLKQGKKEQYAWSDEERDAITKE 470


>gi|119369914|gb|ABL67971.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 245/421 (58%), Positives = 305/421 (72%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF   SYKVSGGLHGVGVSVVNALS +L L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFGASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT + F PS+ IF+   FN+D L  RLRELSFLNS V+I LID+R  
Sbjct: 61  APLAPVGPSE-QRGTTIRFKPSAQIFTHIQFNHDILAKRLRELSFLNSGVRIELIDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E       ++GG++AFV YL+R + P+ +S    +     ++I +A++WND Y E++ C+
Sbjct: 118 ENTSDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPVTIKVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK    GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ +VE+ V+     +        K    +       R+AAR+AR
Sbjct: 238 PKFSSQTKDKLVSSEVKGIVEAAVSASCRIFCLSTRRTPKPSSPRCSRRPRAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSA GSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSADGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH++IIMTDADVDG+HIRTL
Sbjct: 358 ILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|160943136|ref|ZP_02090373.1| hypothetical protein FAEPRAM212_00616 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445605|gb|EDP22608.1| hypothetical protein FAEPRAM212_00616 [Faecalibacterium prausnitzii
           M21/2]
          Length = 699

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 183/668 (27%), Positives = 313/668 (46%), Gaps = 30/668 (4%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61
           S   +   Y  +SI  LKG D V+KRP++  G  DG  G  H I+E++ N+IDE+ +G+ 
Sbjct: 35  SSMAKKQEYGNESITSLKGADRVRKRPAVIFGS-DGVEGCAHSIFEIVSNSIDEARDGHG 93

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGG 119
           D I VT   DGS  V D GRG+P D +  EG    E++   ++AGGK+   + +Y+ S G
Sbjct: 94  DTINVTRCKDGSVIVEDFGRGMPVDWNNGEGRFNWELLFCEMYAGGKYGEGEDNYEFSLG 153

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+G+G+      S+W+   I R+G  Y + F  G     L      G  TG+ + + P  
Sbjct: 154 LNGLGLCATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEPYKGRRTGSIIHWKPDD 213

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVS 234
           ++F+  D      +  LR  + +N+ + ++  D++     + +P   +  Y+ GI  +V+
Sbjct: 214 EVFTDIDVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWHESWCYQNGIADYVA 273

Query: 235 YLDRHK--KPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-----VLCFTNNIPQKDGGT 287
            +       P+        G       D  +R +  +  +     +  + N+   + GG+
Sbjct: 274 EVAGEDTLTPVFSCESEAVGRDREDQPDYKVRMSAAFCFSNKVQLLEYYHNSSWLEHGGS 333

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
               +R+A   QI  Y+++    KK + ++   D ++    V S       + +QTK+ +
Sbjct: 334 PEHAVRTAFVYQINKYLKEKNLYKKGESTISFQDVQDCLVYVSSSFSTRTSYENQTKKAI 393

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +  V   +  F+   L  +  E P EA+ I ++VL     R+ A + R   ++     I
Sbjct: 394 TNKFVSQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQI 453

Query: 408 --ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             A+   K  DC  RD  + EL++VEGDSA G+ K  R  E QAI+P+RGKILN  +A +
Sbjct: 454 DLANRVQKFVDCRTRDSARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKADY 513

Query: 466 DKMLSSQEIGTLITALGTGI---GQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLL 517
            ++  S  I  LI  +G G+   G+ +     F+++ LR++KI+I TDADVDG  IRTL+
Sbjct: 514 ARIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTLV 573

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           LT  +R  P+LI+ G++YI + PLY IT      +   E     +L      +       
Sbjct: 574 LTMLYRLTPTLINKGYVYIAESPLYEITTKDRTYFAYTESEKAAFLQKIGDKKYTIQRSK 633

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G      +         ++   +          ++ A +  +   ++       +A  
Sbjct: 634 GLGENDPEMMW-----LTTMNPESRRLIKVMPTDVVQTAQVFDILLGDNLAGRKEHIAQH 688

Query: 638 LANRLNFI 645
            A  L+ +
Sbjct: 689 GAEYLDDL 696



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 107/320 (33%), Gaps = 39/320 (12%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+               + +++  E  +       ++++     + 
Sbjct: 383 TSYENQTKKAITNKFVSQAMTDFLK--HYLEVYFLEKPEEAQKICQQVLVNKQSREHAEK 440

Query: 579 KGVISKNDLRNFIDDALKIDKLIK---DFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
                K  L   ID A ++ K +          +   +E     G      D E   ++ 
Sbjct: 441 TRQSIKKTLSTQIDLANRVQKFVDCRTRDSARRELYIVEGDSAMGAVKSSRDSE-YQAIM 499

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIFS------ 684
                 LN +     + +   +    I V     +   +  +E       ++        
Sbjct: 500 PIRGKILNCLKADYARIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVIC 559

Query: 685 --FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP----------------CSLLDTI 726
                   +I +  +   Y    +LI  G       P                      +
Sbjct: 560 TDADVDGYQIRTLVLTMLYRLTPTLINKGYVYIAESPLYEITTKDRTYFAYTESEKAAFL 619

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG K  ++QR KGLGE +   +W TT+NP++R L++V  TD  Q   +F  L+GD + 
Sbjct: 620 QKIGDKKYTIQRSKGLGENDPEMMWLTTMNPESRRLIKVMPTDVVQTAQVFDILLGDNLA 679

Query: 787 PRREFIQENS---LPSALDI 803
            R+E I ++    L   LD+
Sbjct: 680 GRKEHIAQHGAEYLD-DLDV 698


>gi|6939926|dbj|BAA90681.1| DNA gyrase subunit B [Marinilabilia salmonicolor]
 gi|6939935|dbj|BAA90682.1| DNA gyrase subunit B [Marinilabilia salmonicolor biovar
           Agarovorans]
          Length = 477

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 220/464 (47%), Positives = 306/464 (65%), Gaps = 9/464 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G IY   +  G   + +   G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSISLKAEVHRDGKIYRQEYSKGKPLSSIEEVG-TTDIN 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFY 225
           GT +TF P   IF+  ++ Y  L +R+RELSFLN+ ++I LIDKR  +     +    + 
Sbjct: 60  GTWITFKPDDSIFNETEYKYSVLANRMRELSFLNAGLEIVLIDKREVDDEGNVKSERFYS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             G+  FV ++D +++ L+  PI I   ++++ +D+A+ +N  ++EN+  + NNI   +G
Sbjct: 120 DEGLLEFVKFIDVNREHLIDQPISISTEKNDVPVDIAIVYNTSFNENIYSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R  LTR + ++ +KS    K K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHLTGFRRGLTRTLKNWADKSGLLSKLKFDISGDDFREGLTAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SEV   V+  V+  L+ +LEE+P +AK IV KV+ A+  R AAR+AR+L +RK VL
Sbjct: 240 KLGNSEVSLAVDQAVSTMLNNYLEENPKDAKAIVNKVILAATARHAARKARELVQRKSVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCSE+DP +SE+FLVEGDSAGG+AKQGRSR  QAILPLRGKILNVE+A  
Sbjct: 300 TGGGLPGKLADCSEKDPAQSEIFLVEGDSAGGTAKQGRSRRFQAILPLRGKILNVEKALQ 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            ++  S EI  + TALG  IG +      +  KLRYHKI+IMTDADVDG HI TL++TFF
Sbjct: 360 HRVFESDEIKNIFTALGVNIGTEDDSKALNTEKLRYHKIVIMTDADVDGRHINTLIMTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           FR M  LI +G+LYI  PPLY + +GK+ QY   +    +++  
Sbjct: 420 FRYMKELIKDGYLYIAAPPLYFLKKGKNEQYCWTDAQRREFVEK 463


>gi|198042710|gb|ACH81180.1| GyrB [Vibrio sp. UST010723-002]
          Length = 407

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 248/409 (60%), Positives = 316/409 (77%), Gaps = 3/409 (0%)

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G  
Sbjct: 1   AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEP 60

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             PL V G     TGTE+ F PS + FS  +F+YD L  RLR+LSFLNS V I L D+R 
Sbjct: 61  QAPLSVIGETE-QTGTEIRFWPSEETFSNTEFHYDILAKRLRDLSFLNSGVSIKLRDER- 118

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVL 274
            E ++    Y+GGI+AFV +L+ +K P+++        R++ I++++AM+WNDGY EN+ 
Sbjct: 119 EEDKQDHFMYEGGIQAFVDHLNTNKTPIIEKVFHFNAEREDGIAVEVAMQWNDGYQENIF 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VE  + + LS +L EHP EAK +  K++DA+  RDAAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIEHPAEAKTVCTKIIDAARARDAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 AREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIM 407


>gi|2905606|gb|AAC03528.1| gyrase subunit B [Shewanella oneidensis]
          Length = 417

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 245/415 (59%), Positives = 322/415 (77%), Gaps = 4/415 (0%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G+ D 
Sbjct: 3   IIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDA 62

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           P+   G A   TGTE+ F PS   FS  +F+++ L  R+R+LSFLNS V I L+D+R  +
Sbjct: 63  PIKEIGDAT-KTGTEIRFWPSEQTFSDVEFHFEILAKRVRKLSFLNSGVGIRLVDERDNK 121

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCF 276
                  Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ CF
Sbjct: 122 N--EFFKYEGGISAFVEYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFCF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PD
Sbjct: 180 TNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 300 EMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMT+ADVDG 
Sbjct: 360 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKNRYHNIIIMTEADVDGR 414


>gi|148470190|gb|ABQ66043.1| gyrase b [uncultured bacterium]
          Length = 419

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 249/422 (59%), Positives = 313/422 (74%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSV NALS +L L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVDNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT + F PS+ IF+   FN+D L  RLRELSFLNS V+I LID+R  
Sbjct: 61  APLAPVGPSE-QRGTTIRFKPSAQIFTHIQFNHDILAKRLRELSFLNSGVRIELIDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYL-DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
           E       ++GG++AF     +R + P+ +S    +      +I++A++WND Y E++ C
Sbjct: 118 ENTSDVFQHEGGLQAFREKYLNRSRTPVHESIPWFKTQDGPETIEVALQWNDSYQESMFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           +TNNIPQKDGGTHL+G RSA TR +  Y+EK   +KKDK    GDD REG T++LS K+P
Sbjct: 178 YTNNIPQKDGGTHLAGFRSAQTRTLNDYIEKEMSAKKDKVPTTGDDAREGLTAILSEKLP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQ K+KLVSSEV+ +VE+  +  L  +L EHP +AK I+ K+L+A+  R+AAR+A
Sbjct: 238 DPKFSSQAKDKLVSSEVKGIVEAAESAKLQDFLLEHPQDAKAIIAKMLEAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 298 REMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH++IIMTDADVDG+HIRT
Sbjct: 358 KILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|94990120|ref|YP_598220.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10270]
 gi|94543628|gb|ABF33676.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10270]
          Length = 408

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/400 (44%), Positives = 255/400 (63%), Gaps = 3/400 (0%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L G+A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  D S TV D+GRGIP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L +     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEII-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI ++V +L+  K  
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
               +L E+P  A+ IV+K + AS  R AA+RAR++TR+K
Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKK 406


>gi|148971439|gb|ABR20257.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 223/425 (52%), Positives = 299/425 (70%), Gaps = 5/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKFN+ +YKVSGGLHGVGVS VNALS  L + + + G+ Y +SF  G + 
Sbjct: 1   EVIMTVLHAGGKFNKDTYKVSGGLHGVGVSCVNALSKALDVNVCKGGHEYTISFARGKVV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT V+F+P   IFSV  ++Y+T+ +RLREL+FLN  ++I   D+R+ 
Sbjct: 61  APLKKLGESK-KRGTTVSFIPDEQIFSVTTYDYETIYNRLRELAFLNKGLEIIFKDERNT 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHEN 272
           +  E     +GGI +FV +L+  K PL Q PI I+G+++        ++AM+WN+ Y E 
Sbjct: 120 DHAEAVFNAEGGIVSFVQFLNETKTPLFQDPIYIKGTKELHDGTLEFEVAMQWNETYTET 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  + NNI  + GGTHL+G  +ALTR + SY++     K  K  + GDD REG  +++S 
Sbjct: 180 VFSYVNNIATRQGGTHLTGFSTALTRVLNSYIKNHNLLKNAKTPITGDDVREGMAAIISA 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+F  QTK+KL + +V S  +  V +  + +LEEHP  AKIIV K   A+  R+AA
Sbjct: 240 KVPDPQFEGQTKQKLGNGDVGSAAQQIVGEEFATYLEEHPSIAKIIVDKAALAAQAREAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LT+RK VLD A LPGKL DCSERDP K E+++VEGDSAGGSAK GR R  QAILP
Sbjct: 300 RKARELTQRKSVLDSARLPGKLTDCSERDPAKCEIYIVEGDSAGGSAKGGRDRRFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R  K+L + E+G++I+A G GIG+D F++ KLRYHKII+MTDADVDG+H
Sbjct: 360 IRGKILNVEKSRLQKVLQNTEVGSMISAFGCGIGKDGFNLEKLRYHKIILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|23978243|dbj|BAC21115.1| DNA gyrase B subunit [Pseudanabaena sp. PCC 7367]
          Length = 392

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 191/391 (48%), Positives = 262/391 (67%), Gaps = 3/391 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN++DE+L GY D I V L  DGS  V+DNGRGIPTD+H   G SA 
Sbjct: 2   GPKGLHHLVYEVVDNSVDEALGGYCDTILVELLADGSVAVTDNGRGIPTDVHPRTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF+  SYKVSGGLHGVGVSVVNALS W+++ + R+G +++  +  GI  
Sbjct: 62  ETVMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSEWVEVSVWRQGKLHQQRYERGIPI 121

Query: 157 NPLVV-TGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             L V T       GT+V F+P + IF+   +F +D L  RLREL++LN+ ++I + D+R
Sbjct: 122 GNLEVSTAKDKQKRGTKVCFMPDTMIFATGIEFEFDILVGRLRELAYLNAGLKIEIADRR 181

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENV 273
               +  T  Y GGI  +VSY+ R K+ L    I I+G R++I I++AM+W  D Y +NV
Sbjct: 182 GETDKVETYQYDGGIREYVSYMTRDKEALHPEIIYIKGERNDIQIEVAMQWCIDSYSDNV 241

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F NNI   DGGTHL GL++ LTR I S   K    K    ++ G++ REG T+V+S+K
Sbjct: 242 FGFANNIRTVDGGTHLEGLKTVLTRTINSTARKLKKLKDSDSNLAGENVREGLTAVISVK 301

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +P+P F  QTK KL ++EVR  V+SFV + L+ ++E +P  A  I++K L +    +AAR
Sbjct: 302 VPEPEFEGQTKTKLGNTEVRGTVDSFVGEVLNEFIEFNPQVASTIIEKALQSYNAAEAAR 361

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           RAR+L RRK VL+ ++LPGKLADCS RDP +
Sbjct: 362 RARELVRRKSVLESSTLPGKLADCSSRDPSE 392


>gi|9971353|dbj|BAB12483.1| DNA gyrase B subunit [Flavobacterium aquatile]
          Length = 474

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 214/460 (46%), Positives = 294/460 (63%), Gaps = 10/460 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G +YE  +  G    P+   G      
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDNLKATVFRDGKVYEQEYEKGKAMYPVKQVGETT-KR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MF 224
           GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+L DKR  +           
Sbjct: 60  GTMVTFHPDKTIFTQTIEYSYDTLAARMRELSFLNKGITITLTDKRHTKDNGDFEGEVFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            K G++ FV +LD  ++P++   I ++  +  + +++A+ +N  Y EN+  + NNI   +
Sbjct: 120 SKEGLKEFVRFLDAGREPIISHVISMEHEKGEVPVEVALVYNTSYSENIFSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL G R  LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLQGFRMGLTRTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVSEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L  +LEE+P +AKIIV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVVSPVSQAVSEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAI+PLRGKILNVE+A 
Sbjct: 300 LGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRNFQAIMPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +        +KLRYHK+IIM DADVDG+HI TL+LTF
Sbjct: 360 HHKVFENEEIRNIFTALGVTIGTEEDSKALNLDKLRYHKVIIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           FFR M  LI  G +YI  PPLY + +G   +Y   ++  +
Sbjct: 420 FFRFMRELIEGGHVYIAAPPLYLVKKGNKKEYAWTDDQRD 459


>gi|295104658|emb|CBL02202.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Faecalibacterium prausnitzii SL3/3]
          Length = 663

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 182/664 (27%), Positives = 310/664 (46%), Gaps = 30/664 (4%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   Y  +SI  LKG D V+KRP++  G  DG  G  H I+E++ N+IDE+ +G+ D I 
Sbjct: 3   KKQEYGNESITSLKGADRVRKRPAVIFGS-DGVEGCAHSIFEIVSNSIDEARDGHGDTIN 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGV 123
           VT   DGS  V D GRG+P D +  EG    E++   ++AGGK+   + +Y+ S GL+G+
Sbjct: 62  VTRCKDGSVIVEDFGRGMPVDWNNGEGRFNWELLFCEMYAGGKYGEGEDNYEFSLGLNGL 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+      S+W+   I R+G  Y + F  G     L      G  TG+ + + P  ++F+
Sbjct: 122 GLCATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEPYKGRRTGSIIHWKPDDEVFT 181

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDR 238
             D      +  LR  + +N+ + ++  D++     + +P   +  Y+ GI  +V+ +  
Sbjct: 182 DIDVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWHESWCYQNGIADYVAEVAG 241

Query: 239 HK--KPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-----VLCFTNNIPQKDGGTHLSG 291
                P+        G       D  +R    +  +     +  + N+   + GG+    
Sbjct: 242 EDTLTPVFSCESEAVGRDREDQPDYKVRMGAAFCFSNKVQLLEYYHNSSWLEHGGSPEHA 301

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           +R+A   QI  Y+++    KK + ++   D ++    V S       + +QTK+ + +  
Sbjct: 302 VRTAFVYQINKYLKEKNLYKKGESAISFQDVQDCLVYVSSSFSTRTSYENQTKKAITNKF 361

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI--AS 409
           V   +  F+   L  +  E P EA+ I ++VL     R+ A + R   ++     I  A+
Sbjct: 362 VSQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQIDLAN 421

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
              K  DC  RD  + EL++VEGDSA G+ K  R  E QAI+P+RGKILN  +A + ++ 
Sbjct: 422 RVQKFVDCRTRDAARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKADYARIF 481

Query: 470 SSQEIGTLITALGTGI---GQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            S  I  LI  +G G+   G+ +     F++  LR++KI+I TDADVDG  IRTL+LT  
Sbjct: 482 KSDVIVDLIKVMGCGVELGGKHNKELATFNLENLRFNKIVICTDADVDGYQIRTLVLTML 541

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +R  P+LI+ G++YI + PLY IT      +   E     +L      +         G 
Sbjct: 542 YRLTPTLINKGYVYIAESPLYEITTKDRTYFAYTEPEKAAFLEKIGDKKYTIQRSKGLGE 601

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                +         ++   +          ++ A +  +   ++       +A   A  
Sbjct: 602 NDPEMMW-----LTTMNPESRRLIKVMPTDVVQTAQVFDILLGDNLAGRKEHIAQHGAEY 656

Query: 642 LNFI 645
           L+ +
Sbjct: 657 LDDL 660



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 107/320 (33%), Gaps = 39/320 (12%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+               + +++  E  +       ++++     + 
Sbjct: 347 TSYENQTKKAITNKFVSQAMTDFLK--HYLEVYFLEKPEEAQKICQQVLVNKQSREHAEK 404

Query: 579 KGVISKNDLRNFIDDALKIDKLIK---DFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
                K  L   ID A ++ K +          +   +E     G      D E   ++ 
Sbjct: 405 TRQSIKKTLSTQIDLANRVQKFVDCRTRDAARRELYIVEGDSAMGAVKSSRDSE-YQAIM 463

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIFS------ 684
                 LN +     + +   +    I V     +   +  +E       ++        
Sbjct: 464 PIRGKILNCLKADYARIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLENLRFNKIVIC 523

Query: 685 --FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC----------------SLLDTI 726
                   +I +  +   Y    +LI  G       P                      +
Sbjct: 524 TDADVDGYQIRTLVLTMLYRLTPTLINKGYVYIAESPLYEITTKDRTYFAYTEPEKAAFL 583

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG K  ++QR KGLGE +   +W TT+NP++R L++V  TD  Q   +F  L+GD + 
Sbjct: 584 EKIGDKKYTIQRSKGLGENDPEMMWLTTMNPESRRLIKVMPTDVVQTAQVFDILLGDNLA 643

Query: 787 PRREFIQENS---LPSALDI 803
            R+E I ++    L   LD+
Sbjct: 644 GRKEHIAQHGAEYLD-DLDV 662


>gi|2267068|gb|AAB63499.1| gyrase B subunit [Pseudoalteromonas haloplanktis subsp.
           haloplanktis]
          Length = 422

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 252/414 (60%), Positives = 320/414 (77%), Gaps = 6/414 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG ++E  +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQFYTMGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ F PS + F+  DF+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVIGDSE-TNGTEIRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-E 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVL 274
           E +     Y+GGI AFV YL+R+K P+ +        R+   IS++++M+WND + EN+ 
Sbjct: 119 ENKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDAFQENIY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSI 332
           CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VE  + +  + +L E+PL+AKI+V K++DA+  R+AA
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           L+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D +D  KLRYH+IIIMTD 
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHRIIIMTDQ 412


>gi|261599947|dbj|BAI45224.1| DNA gyrase beta-subunit [Pullulanibacillus naganoensis]
          Length = 419

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 217/422 (51%), Positives = 298/422 (70%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVG SVVNALS  L +++  +GNI+   +  G+  
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGASVVNALSEELWVKVYLKGNIHYQVYKRGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215
           + L + G   + TGT + F+P  +IF+    F +D L  R++EL+FLN  ++I+L D+R 
Sbjct: 61  SDLEIIGDT-DKTGTMIHFIPDPEIFTETTVFEFDILAKRIKELAFLNRGLRITLEDERE 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
              ++    Y+GGI++FV  L++ K  L + PI ++G +D IS+++AM++NDGY   +  
Sbjct: 120 NGKKKSYF-YEGGIKSFVKDLNKQKDVLHEEPIYVEGEKDGISVEVAMQYNDGYTSQIYS 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH  G ++ALTR I  Y +KS   K+   +++GDD REG T+++S+K P
Sbjct: 179 YANNIHTHEGGTHEFGFKTALTRVINDYAKKSQIFKESDPNLMGDDVREGLTAIVSVKHP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL ++E R++ ES   +  + +L E+P  A+ IV K L AS  R AA++A
Sbjct: 239 DPQFEGQTKTKLGNTEARTITESLFGEKFARFLIENPDVARKIVDKGLMASRARAAAKKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LTRRK  L++++LPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRG
Sbjct: 299 RELTRRKSALEVSALPGKLADCSSKDAAISEIYIVEGDSAGGSAKQGRDRHFQAILPLRG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR DK+LS+ EI  +ITALG G+    FDI K RYHK+IIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARLDKILSNNEIRAIITALGCGV-STDFDIEKARYHKVIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|213391520|gb|ACJ46501.1| gyrase B subunit [Pseudoalteromonas sp. BSw20607]
          Length = 423

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 251/411 (61%), Positives = 321/411 (78%), Gaps = 6/411 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL V G
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIG 67

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            +   TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E +    
Sbjct: 68  DSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHF 125

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIP 281
            Y+GGI+AFV YL+R+K P+ +        R+   IS++++M+WND Y EN+ CFTNNIP
Sbjct: 126 KYEGGIQAFVEYLNRNKTPIHKGVFHFTHEREEDGISVEVSMQWNDAYQENIYCFTNNIP 185

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRF 339
           Q+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+F
Sbjct: 186 QRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKF 245

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEV+S VE  + +  + +L E+P +AKI+V K++DAS  R+AAR+AR++T
Sbjct: 246 SSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDASRAREAARKAREMT 305

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILN
Sbjct: 306 RRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 365

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           VE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTDADVDG
Sbjct: 366 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDG 416


>gi|84310478|gb|ABC55387.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 409

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 206/409 (50%), Positives = 292/409 (71%), Gaps = 3/409 (0%)

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+   YKVSGGLHGVG SVVNALS+ L + + R+G I+   F  G+    L V 
Sbjct: 2   LHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKIHYQEFERGVPKADLKVI 61

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           G     TGT   F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+ 
Sbjct: 62  GDTE-VTGTTTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKN 120

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI+++V +L+R ++ + + P+ I+GS+D I++++A+++ND Y  N+  F NNI 
Sbjct: 121 EYCYEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIH 180

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH +G ++ LTR I  Y  ++   K+   ++ G+D REG T+++SIK PDP+F  
Sbjct: 181 TYEGGTHEAGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEG 240

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +SE R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+L RR
Sbjct: 241 QTKTKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELARR 300

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  L++++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE
Sbjct: 301 KSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 360

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           +AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDG
Sbjct: 361 KARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDG 408


>gi|13517047|dbj|BAB40406.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04475]
          Length = 474

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 222/466 (47%), Positives = 310/466 (66%), Gaps = 10/466 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVSVVNALS+ LK  + REG I+E  +  G    P+   G +  +T
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSNHLKATVHREGKIWEQEYERGKTLYPVKSVGESK-ET 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF+P   IFS    F+YDTL +R+REL++LN  V I+L DKR+     E    T F
Sbjct: 60  GTMVTFIPDDSIFSQTTEFSYDTLANRMRELAYLNKGVTITLTDKRNKDDKGEFISETFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ F+ +LD +++PL+Q+ I ++G ++ I +++AM +N GY EN+  + NNI   +
Sbjct: 120 SNEGLKEFIRFLDGNREPLIQTVISMEGEKNGIPVEVAMIYNTGYTENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  V GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVAGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEEHP +AK +V+KV+ A+  R AA +AR++ +RK  
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQRKNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DC++++P+  ELFLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A 
Sbjct: 300 MTGGGLPGKLSDCADQNPENCELFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK+IIM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNMYTALGVTIGTEEDSKALNLEKLRYHKVIIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           FFR M  LI NG +YI  PPLY + +G   +Y  +++  ++ + + 
Sbjct: 420 FFRYMRELIENGHVYIATPPLYLVKKGSKRRYAWNDDERDEIVESM 465


>gi|125972826|ref|YP_001036736.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum ATCC
           27405]
 gi|256005839|ref|ZP_05430789.1| DNA gyrase subunit B domain protein [Clostridium thermocellum DSM
           2360]
 gi|281417025|ref|ZP_06248045.1| DNA gyrase subunit B domain protein [Clostridium thermocellum JW20]
 gi|125713051|gb|ABN51543.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum ATCC
           27405]
 gi|255990203|gb|EEU00335.1| DNA gyrase subunit B domain protein [Clostridium thermocellum DSM
           2360]
 gi|281408427|gb|EFB38685.1| DNA gyrase subunit B domain protein [Clostridium thermocellum JW20]
 gi|316940938|gb|ADU74972.1| DNA gyrase subunit B domain protein [Clostridium thermocellum DSM
           1313]
          Length = 661

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 172/665 (25%), Positives = 297/665 (44%), Gaps = 27/665 (4%)

Query: 1   MSDNIQNSS--YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           MS   QN +  Y   SI+ LKG + V+ RP++  G  DG  G  H  +E+L N+IDE+ E
Sbjct: 1   MSKEKQNKAERYGNTSIKSLKGAERVRLRPAVIFGS-DGIEGCQHSFFEILSNSIDEARE 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YK 115
           G+  +I VT   D S  V D GRGIP D ++ E     E++   L+AGGK+   S   Y+
Sbjct: 60  GFGKVIEVTRFKDRSIMVKDYGRGIPLDYNENEKRYNWELVFCELYAGGKYKNNSGENYE 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            S GL+G+G       S ++ + + R+G  Y++ F  G     L         TGT + +
Sbjct: 120 FSLGLNGLGSCATQYSSEYMDVTVFRDGMRYDLHFEKGENVGGLKKQKWDYESTGTIIKW 179

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFV 233
            P  ++F+  +   +     LR+ + +N+ ++  L D+ S    E          I+   
Sbjct: 180 RPDLEVFTDINIPLEYYTEVLRKQAVVNAGLKFILYDEESDRVFEYCYENGIVDYIKEVS 239

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV---LCFTNNIPQKDGGTHLS 290
                      ++  R +   D     L M+    ++  V     + N+   + GG    
Sbjct: 240 GDKAFTDIQYYETSTRGRDREDKPEYKLKMQIAFCFNNEVNLLEYYHNSSFLEYGGAPDK 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +++A    I  +++      KD+  +   D ++    V +       + +QTK+ + + 
Sbjct: 300 AVKNAFVYVIDKFLKSQGKYNKDESRITFQDIQDSLILVSNSFSTITSYENQTKKSITNK 359

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDIA 408
            ++  +  F+ + L  +  E+ +E   I+++VL     R+ A + R   ++K  G +DI+
Sbjct: 360 FIQEAMTEFLKEKLEVYFIENKVECTKILEQVLVNKRSRETAEKTRVNIKKKLSGNVDIS 419

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +   K  DC  +D  K E+++VEGDSA GS K  R  E QAI+P+RGKILN  +A +D +
Sbjct: 420 NRVKKFVDCRSKDVNKREIYIVEGDSALGSCKLARDAEFQAIIPVRGKILNCLKADYDSI 479

Query: 469 LSSQEIGTLITALGTGIGQD--------SFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             ++ I  L+  LG G+           +FD+N LR+ KIII TDADVDG  IRTL+L  
Sbjct: 480 FKNEIIVDLLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIICTDADVDGYQIRTLILAM 539

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +R +P+LI  G ++I + PL+ I       +   ++   + +        I        
Sbjct: 540 LYRLVPTLIQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNEIVSKLKGKYTILRSKGLGE 599

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                     +     ++   +           +      +F  ++       +      
Sbjct: 600 N------DPDMMWQTTMNPETRRLIQVVPDDIKKTEEFFDLFLGDNLPGRKSYIEEHGHK 653

Query: 641 RLNFI 645
            L+ I
Sbjct: 654 YLDMI 658



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 109/310 (35%), Gaps = 32/310 (10%)

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
             +T +  Q    I N F+               + +++++      L    +++     
Sbjct: 343 STITSYENQTKKSITNKFIQEAMTEFLK--EKLEVYFIENKVECTKILEQVLVNKRSRET 400

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN--CESDQEINVS 633
            +   V  K  L   +D + ++ K +     + +K  I              +      +
Sbjct: 401 AEKTRVNIKKKLSGNVDISNRVKKFVDCRSKDVNKREIYIVEGDSALGSCKLARDAEFQA 460

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIF----- 683
           +       LN +    +  +   I    + V     +  ++  +E    + +++      
Sbjct: 461 IIPVRGKILNCLKADYDSIFKNEIIVDLLKVLGCGVEIKSKHNRELSTFDLNNLRWSKII 520

Query: 684 ---SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL---------------DT 725
                     +I +  +   Y  + +LI  G       P   +               + 
Sbjct: 521 ICTDADVDGYQIRTLILAMLYRLVPTLIQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNE 580

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           I S  +   ++ R KGLGE +   +W+TT+NP+TR L++V   D  + ++ F   +GD +
Sbjct: 581 IVSKLKGKYTILRSKGLGENDPDMMWQTTMNPETRRLIQVVPDDIKKTEEFFDLFLGDNL 640

Query: 786 EPRREFIQEN 795
             R+ +I+E+
Sbjct: 641 PGRKSYIEEH 650


>gi|317133209|ref|YP_004092523.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
 gi|315471188|gb|ADU27792.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
          Length = 661

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 185/661 (27%), Positives = 301/661 (45%), Gaps = 32/661 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + +Y  DSI  LKG + V+KRP +  G  DG  G  H I+E+L N+IDE+ EGY + I V
Sbjct: 6   SQTYGNDSISTLKGAERVRKRPGVIFGS-DGLEGCEHSIFEILSNSIDEAREGYGNRIIV 64

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN---QKSYKVSGGLHGV 123
           T   D S  V D GRG+P D +  E     E++   L+AGGK+N    +SY+ S GL+G+
Sbjct: 65  TRFADHSVQVEDFGRGVPVDYNPAEKRFNWELVYCELYAGGKYNTQAGESYEYSLGLNGL 124

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G       S ++ +  +R+G  Y + F  G     L    S    TGT   +LP  D+F+
Sbjct: 125 GACATQYASRYMDVISRRDGMEYTLHFERGENVGGLQKKKSKDKTTGTVQRWLPDLDVFT 184

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             D      Q  L+  + +N  ++  L D+          +Y+ GIE +V   +   +  
Sbjct: 185 DIDVPLAFYQDMLKRQAVVNPGLRFLLRDETPDGFETCEFYYENGIEDYVR--ELAGEDA 242

Query: 244 MQSPIRIQGSR----------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +     I   R            + I +A  +++     +  + N+   + GG     +R
Sbjct: 243 LTPVQSISCERQGRDRADKPEYKVKIAVAFCFHNS-ANRLEYYHNSSYLEHGGAPEKAVR 301

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SA   QI + +++S    K++  +   D  +    V S       + +QTK+ + +  ++
Sbjct: 302 SAFLSQIDALLKQSNKYLKNESRISFQDLEDCLLLVSSSFSTITSYENQTKKSITNKFIQ 361

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDIASLP 411
             +  F+   L  +  E+P +A  I ++VL     R+ A + R   ++K  G LDIA+  
Sbjct: 362 EAMTDFLRHSLEVYFIENPDDANKIAEQVLVNKRSRENAEKTRLNLKKKLSGSLDIANRV 421

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
            K  DC  RD  K EL++VEGDSA G+ K GR    QAI+P+RGKILN  +A + K+  +
Sbjct: 422 QKFVDCRTRDVSKRELYIVEGDSALGACKLGRDATFQAIIPVRGKILNCLKADYAKIFKN 481

Query: 472 QEIGTLITALGTGIG--------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
             I  +I  LG G+            F + +LR++K++I TDADVDG  IRTL+LT  +R
Sbjct: 482 DIITDIIKVLGCGVEVNTRANKDMHGFSLEQLRWNKVVICTDADVDGYQIRTLILTMLYR 541

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            +P+LI  G++YI + PLY I       +   E      L      +         G   
Sbjct: 542 LVPTLIREGYVYIAESPLYEINEKSMTYFAYTEPEKSTILAKLKGKKYTVQRSKGLGENE 601

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            + +         ++   +           +   +  +    +  E    +A      ++
Sbjct: 602 PDMMWET-----TMNPETRRLIRVLPDDVEKTVEVFDMLLGNNLAERKQYIAEHGEEYID 656

Query: 644 F 644
            
Sbjct: 657 L 657



 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 104/311 (33%), Gaps = 33/311 (10%)

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
             +T +  Q    I N F+               + ++++ +          +++     
Sbjct: 342 STITSYENQTKKSITNKFIQEAMTDFLR--HSLEVYFIENPDDANKIAEQVLVNKRSREN 399

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVS 633
            +   +  K  L   +D A ++ K +     +  K  +                     +
Sbjct: 400 AEKTRLNLKKKLSGSLDIANRVQKFVDCRTRDVSKRELYIVEGDSALGACKLGRDATFQA 459

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIF----- 683
           +       LN +     K +   I    I V     +   R  ++        +      
Sbjct: 460 IIPVRGKILNCLKADYAKIFKNDIITDIIKVLGCGVEVNTRANKDMHGFSLEQLRWNKVV 519

Query: 684 ---SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT--------------- 725
                     +I +  +   Y  + +LI  G       P   ++                
Sbjct: 520 ICTDADVDGYQIRTLILTMLYRLVPTLIREGYVYIAESPLYEINEKSMTYFAYTEPEKST 579

Query: 726 IFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
           I +  + K  ++QR KGLGE     +WETT+NP+TR L+RV   D  +  ++F  L+G+ 
Sbjct: 580 ILAKLKGKKYTVQRSKGLGENEPDMMWETTMNPETRRLIRVLPDDVEKTVEVFDMLLGNN 639

Query: 785 VEPRREFIQEN 795
           +  R+++I E+
Sbjct: 640 LAERKQYIAEH 650


>gi|9971375|dbj|BAB12494.1| DNA gyrase B subunit [Microscilla furvescens]
          Length = 478

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 232/475 (48%), Positives = 319/475 (67%), Gaps = 9/475 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ LK  + R G ++E  +  GI   P+  TG   + T
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTHLKATVHRNGTVFEQEYSRGIPQYPVKETGKT-DIT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFY 225
           GT V F P  DIF+V ++ Y+T+  RLREL+FLN+ +++ LID R  +      + + F 
Sbjct: 60  GTIVHFKPDMDIFTVGEYKYETVASRLRELAFLNAGIKLELIDHREQDENGNDLQESFFS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG++ FV YLD  ++ L+  PI I   +  I +++A+ +N  Y ENV+ + NNI   +G
Sbjct: 120 EGGLKEFVIYLDSTRERLIPDPIHINNEQGEIPVEVALSYNTSYSENVVSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R ALTR + SY +KS   +K K  + GDD REG T+V+SIK+ +P+F  QTK 
Sbjct: 180 GTHVAGFRRALTRTLKSYADKSGLLEKAKVEITGDDFREGLTAVVSIKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SE    V+S +++ L  +LEEHP EAK I++KV+ A+  R AAR+AR++ +RK VL
Sbjct: 240 KLGNSEASGAVDSSLSEALLTYLEEHPKEAKQIIQKVILAAQARQAARKAREMVQRKNVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCS++DP K E++LVEGDSAGGSAKQGR R+ QAILPLRGKILNVE+A+ 
Sbjct: 300 SGTGLPGKLADCSDKDPAKCEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  + EI  +ITALG   G++        +KLRYHKIIIMTDAD+DG+HIRTL+LTFF
Sbjct: 360 HKIYDNDEIKNIITALGVQFGKEDDQKALNTDKLRYHKIIIMTDADIDGSHIRTLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           FR M  LI NG+LYI  PPLY I +GK  +Y   E+     +   +   + +   
Sbjct: 420 FRYMRELIENGYLYIALPPLYLIKKGKQERYAWTEDDRVRIVKEIAPEGKEDTVN 474


>gi|28866794|dbj|BAC65175.1| DNA gyrase B subunit [Cyclobacterium marinum]
          Length = 478

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 220/475 (46%), Positives = 314/475 (66%), Gaps = 9/475 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALSS +K+ + R G I+E  ++ G+    +   G   +  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSSSMKVTVHRGGKIHEQEYVRGVPQYEVREIGET-DRR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFY 225
           GT V F P  +IF + ++ Y+T+ +RLRE++FLN+ ++ISL D R  +     R    + 
Sbjct: 60  GTHVHFKPDHEIFQILEYKYETIANRLREMAFLNAGIKISLKDLREKDEEGNYRADDFYS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV YLD +K+ +++ PI I+  ++ + + +AM +N+ Y ENV+ + N I   +G
Sbjct: 120 EGGLIEFVEYLDENKQKIIEKPIYIESEKNGVPVQVAMGYNNSYTENVVSYVNTINTYEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH+SG R ALTR + SY +KS    K K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHVSGFRRALTRTLKSYADKSGMLDKVKIDISGDDFREGLTAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +S+V   V++ V++ L  WL EHP EAKII+ KV+ A+  R AA++AR++ +RK VL
Sbjct: 240 KLGNSDVTGAVDASVSETLQFWLLEHPKEAKIIIGKVVLAAQARHAAKKAREMVQRKNVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADC+  DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+A+ 
Sbjct: 300 GGGGLPGKLADCANSDPAVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  + EI  ++TALG   G  + +      KLRYHKIIIMTDAD+DG+HIRTL+LT F
Sbjct: 360 HKIYDNDEIKNILTALGVKFGTANDEKELDLSKLRYHKIIIMTDADIDGSHIRTLILTLF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           FR M +LI +G++YI  PP Y + RGK  +Y   EE  +  +   +   + +   
Sbjct: 420 FRYMRNLIESGYVYIALPPFYLLKRGKEERYCWTEEDRQRVVKELAPDGKEDSVN 474


>gi|42541283|gb|AAS19521.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651909|gb|ABD14442.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264881|gb|ABG57016.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264887|gb|ABG57019.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264891|gb|ABG57021.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264893|gb|ABG57022.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264895|gb|ABG57023.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|146447332|gb|ABQ41311.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 404

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 244/406 (60%), Positives = 318/406 (78%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     
Sbjct: 61  T-DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|2196836|gb|AAB80835.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 245/422 (58%), Positives = 323/422 (76%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L   GKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G   
Sbjct: 1   EVIMTVLRPLGKFDHNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS + F+  +F+Y+ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  EPIKEIGEAT-KTGTEIRFWPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI+AFV YL+R+K P+ +        R++ I++++AM+WNDG+ E++ C
Sbjct: 120 KD--ELFHYEGGIKAFVKYLNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGFQESIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAALTRNLNNYMEKEGFNKKGKTNATGDDAREGLTAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+  VE  + + ++ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKGAVEQTMGEKMNDYLLENPADAKMIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KI NVE+ARFDKML  QE+ TLITALG GIG+D +D +K RYHKIII TDADVDG+HI T
Sbjct: 358 KIFNVEKARFDKMLFFQEVATLITALGCGIGRDEYDPDKTRYHKIIIRTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|9971347|dbj|BAB12480.1| DNA gyrase B subunit [Flavobacterium johnsoniae]
          Length = 474

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 214/461 (46%), Positives = 293/461 (63%), Gaps = 10/461 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVSVVNALS  +K  + REG IYE  +  G    P+   G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSVHMKSTVFREGKIYEQEYERGKSLYPVKQIGET-DKR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT  TF P   IF     F+YDTL  R+RELSFLN  + I+  DKR      E +     
Sbjct: 60  GTRQTFFPDDTIFQQTTEFSYDTLSARMRELSFLNKGITITFTDKREVDDKGEFKSEVFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + NNI   +
Sbjct: 120 SDEGLKEYIRYLDGNREPIISHVISMDHEKGEIPVEVALIYNTSYSENIFSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL G RS LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLQGFRSGLTRTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVSEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V + L  +LEE+P +AKII++KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNREVVSPVSQAVGEMLENYLEENPNDAKIIIQKVILAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCSE+DP + E++LVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  +G        +I KLRYHK+IIM DADVDG+HI TL+LTF
Sbjct: 360 HHKVFENEEIRNIFTALGVTVGTAEDSKALNIEKLRYHKVIIMCDADVDGSHISTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           FFR M  LI  G +YI  PPLY + +G   +Y  ++   + 
Sbjct: 420 FFRFMKELIEEGHVYIAAPPLYLVKKGNKKEYAWNDVQRDQ 460


>gi|2196850|gb|AAB80842.1| DNA gyrase beta-subunit [Citrobacter sp. AQ-2]
          Length = 419

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 256/422 (60%), Positives = 326/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHA  KF   SYKVSGGLHGVGVSVVNALS  L+L I+REG +++ ++++G+  
Sbjct: 1   EVIMTVLHALEKFEANSYKVSGGLHGVGVSVVNALSQKLELVIRREGKVHQQTYMHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG     TGT+V F PS + F+   +F YD L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGETE-VTGTQVRFWPSHETFTNVVEFEYDILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+ TRRKG LD+A LPGKLADC ERDP   EL+LVEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REKTRRKGALDLAGLPGKLADCQERDPAHFELYLVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRY  II++TDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYQSIIMITDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|6939896|dbj|BAA90678.1| DNA gyrase subunit B [Bacteroides vulgatus]
          Length = 479

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 217/472 (45%), Positives = 302/472 (63%), Gaps = 11/472 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ +  ++ R G IY+  +  G     +   G   + T
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG-TADIT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFY 225
           GT+ TF P   IF+V ++ +D LQ R+REL++LN  + ISL D    +     ++     
Sbjct: 60  GTKQTFWPDDTIFTVTEYKFDILQARMRELAYLNKGITISLTDRRIKEEDGSFKKEIFHS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             G++ FV +L+R+ + L+   I +   ++N  I+ A+ +N GY E++  + NNI   +G
Sbjct: 120 DEGVKEFVRFLNRNNEALINDVIYLNTEKNNTPIECAIMYNTGYRESLHSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH +G RSALTR +  Y E +   +K K  + G+D REG  +V+S+K+ +P+F  QTK 
Sbjct: 180 GTHEAGFRSALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SEV   V   V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR+  +RK  +
Sbjct: 240 KLGNSEVSGAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESVQRKSPM 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCS R+P++ ELFLVEGDSAGGSAKQGRSR  QAILPLRGKILNVE+A +
Sbjct: 300 GGGGLPGKLADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILNVEKAMW 359

Query: 466 DKMLSSQEIGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            K   S E+  +ITALG   G          +I+KLRYHK++IMTDADVDG+HI TL++T
Sbjct: 360 HKAFESDEVNNIITALGVRFGVDGNDDSKKANIDKLRYHKVVIMTDADVDGSHIDTLIMT 419

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
            F+R MP +I NG LYI  PPLY  ++GK  +Y   EE+ + ++      +E
Sbjct: 420 LFYRYMPEIIENGHLYIANPPLYKCSKGKISEYCYTEEARQAFIQKYGDGQE 471


>gi|9971355|dbj|BAB12484.1| DNA gyrase B subunit [Psychroflexus gondwanensis]
          Length = 474

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 216/475 (45%), Positives = 309/475 (65%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVSVVNALS  L  R+ ++G ++E  +  G    P+  TG      
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSIKLHARVFKDGRVWEQEYERGKAIYPVKSTGDTE-LK 59

Query: 170 GTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMF 224
           GTE+TF P  +IF    +F Y+TL  RLRELSFLN  ++IS+IDKR      E R    +
Sbjct: 60  GTEITFKPDYEIFQESVEFKYETLAKRLRELSFLNKGIKISIIDKRQTNDDGEYRHDEFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ ++D++++P++   I ++  +++I +++AM +N  Y EN+  + NNI   +
Sbjct: 120 SEEGLKEFIRFIDQNREPIITDVISMESEKNDIPVEVAMVYNSSYSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTATLKKYADNSGLLDKLKFEITGDDFREGLTAIVSVKVANPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + E+ S V   V + L  +LEE+P +AK IV+KV+ A+  R AA++AR++ +RK V
Sbjct: 240 TKLGNRELTSAVSQAVTEMLEIYLEENPNDAKTIVQKVMLAAQARHAAKKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCSE+DP+  E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A 
Sbjct: 300 MSGGGLPGKLSDCSEQDPEACEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             ++  ++EI  + TALG  IG +        +KLRYHK+IIM DADVDG+HI TL+LTF
Sbjct: 360 QHRVFENEEIKNIYTALGVTIGTEEDSKALNLSKLRYHKVIIMCDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI    +YI  PPLY I +G   +Y  +E+   + +     S  ++ +
Sbjct: 420 FFRYMKELIEASHIYIATPPLYLIKKGSKKRYAWNEKERNEIVKEYKTSVSVQRY 474


>gi|159146568|gb|ABW90728.1| DNA gyrase beta subunit [Vibrio cholerae]
          Length = 404

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 245/406 (60%), Positives = 316/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    
Sbjct: 61  TE-RTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|13358814|dbj|BAB33153.1| DNA gyrase B subunit [Chitinophaga pinensis]
          Length = 481

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 223/474 (47%), Positives = 314/474 (66%), Gaps = 13/474 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS  L + ++REG ++E  +  G+    +   G   + T
Sbjct: 1   DKNTYKVSGGLHGVGVSCVNALSDKLHVTVRREGKLFEQEYQRGVPQYAVREIG-TSDST 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFY 225
           GT V F P ++IF    +N + L  RLREL++LN  ++I+L D R  +        T + 
Sbjct: 60  GTTVHFKPDNEIFKETIYNREILAGRLRELAYLNRKIKITLTDDREKDEAGNSVTETFYS 119

Query: 226 KGGIEAFVSYLDRH--KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIP 281
           +GGI  FV  LDR+  +  L+  PI I+      N+++++A+ +ND + EN+  + NNI 
Sbjct: 120 EGGIIEFVQMLDRNGRRNGLLPDPIFIEAHDASSNVAVEVAVIYNDSFSENIFSYVNNIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH++G R A+TR   SY +K+   +K K  V GDD REG ++++S+K+P+P+F  
Sbjct: 180 TIEGGTHVAGFRRAITRIFKSYGDKNKMFEKTKIEVTGDDFREGLSAIISVKVPEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +S+V  VV+S V   L A+LEEHP EAKII+ KV+ A+  R+AAR+AR + +R
Sbjct: 240 QTKTKLGNSDVMGVVDSSVAAVLDAYLEEHPREAKIIINKVVLAAQAREAARKARQMVQR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K VL  + LPGKLADCSE DP+K EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE
Sbjct: 300 KSVLSGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLL 517
           +A   K+  ++EI  + TALG  IG +  D     +KLRYHK+IIMTDADVDG+HI TL+
Sbjct: 360 KAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLI 419

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           LTF FR M +++  G++YI +PPLY + + K   Y   EE  +  +   +  +E
Sbjct: 420 LTFIFRYMKAMVEQGYVYIAQPPLYLVKKSKEQIYAWTEEDRKAAIAKIAGGKE 473


>gi|6644148|gb|AAF20923.1| gyrase B subunit [Alishewanella fetalis]
          Length = 417

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 247/420 (58%), Positives = 315/420 (75%), Gaps = 4/420 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L  GGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++   +  G+  
Sbjct: 1   EVIMTFLECGGKFDDNSYKVSGGLHGVGVSVVNALSDVLELTIRRKGKVHSQIYHLGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G     TGT + F PS  IFS  +F+YD L  RLRELSFLNS V I L D+R+ 
Sbjct: 61  APLSVIGETE-GTGTAIRFWPSPTIFSDINFHYDILAKRLRELSFLNSGVSIILTDERTD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y GGIEAFV YL+R K             R++ I++++AM+WND Y ENV C
Sbjct: 120 KT--DHFKYDGGIEAFVQYLNRSKPVFNPKAFYFTDQREDGIAVEVAMQWNDSYQENVFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+++   +KK K    GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRVLNTYIDQEGYAKKMKVQASGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEVRS VES + + L+ +L E+  +AK+ V K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVRSAVESVMAEKLNEYLVENRGDAKLFVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++T RKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTVRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARF K+LSSQE+GTLITALG GIG++ ++ +K RYH I++MTDADV+G+HI T
Sbjct: 358 KILNVEKARFHKILSSQEVGTLITALGCGIGREEYNPDKTRYHSIVLMTDADVEGSHILT 417


>gi|156087396|ref|XP_001611105.1| DNA gyrase subunit B [Babesia bovis T2Bo]
 gi|154798358|gb|EDO07537.1| DNA gyrase subunit B, putative [Babesia bovis]
          Length = 944

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 190/552 (34%), Positives = 302/552 (54%), Gaps = 67/552 (12%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           S Y  D I +L+GL+AV+KRP MYIG+T  E+GLH +++E+LDN++DE L G  + ITVT
Sbjct: 148 SEYSTDDIVVLQGLEAVRKRPGMYIGNT-TETGLHQLLFEILDNSVDEYLAGCCNKITVT 206

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS-------------- 113
           L  DGS  +SDNGRGIP D+ ++ G S  E ++T LH+GGKFN  +              
Sbjct: 207 LRADGSAEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFNDTTSKPTPEDQVDEFYD 266

Query: 114 --------------------------YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
                                     Y+ + GLHGVG+SVVNALS+WL+  + +    Y 
Sbjct: 267 THISRKFRSQHVRGLRKRLKDASSNPYEYASGLHGVGLSVVNALSAWLRADVYKGTKQYS 326

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF---------------SVQDFNYDTL 192
           +    G++  PL V+  A   TGT ++F+P  D                     FN+DT+
Sbjct: 327 IQLSRGMVTEPLSVSKCAK-RTGTTISFMPDYDHVFIAHHDHQVDTECPGCASAFNHDTV 385

Query: 193 QHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQ--S 246
           ++R+ ELS++N  + + L+D+R         E T  +KGG   F+  + + + PL +  +
Sbjct: 386 RNRIEELSYVNPMLTLRLVDERLVNEDGSFHEETFMHKGGTREFLQDIIKDRVPLYKSAN 445

Query: 247 PIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            I I+G    + +++++ W  + Y   +  F NN+     GTH+ G ++A+T+ +     
Sbjct: 446 IINIRGKSGGVEVEVSLSWAAETYAAQLKGFANNV-STSAGTHIEGFKAAITKAVNHACR 504

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           ++   K    S+ G+  REG T+++S+K+    F  QTK KL +   R+ VE  V+  ++
Sbjct: 505 RAGLFKHKAPSISGEFIREGLTAIISVKLMGAEFDGQTKSKLGNQIARTAVERIVSYQMN 564

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG-VLDIASLPGKLADCSERDPKK 424
             LE+HP     I  K + A    + A+ A++L R+K        LP KL+DC+  D   
Sbjct: 565 EILEKHPQLLTAIYNKSIAAKRAFEVAKHAKELVRQKNANFLTTGLPAKLSDCTSNDIGL 624

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD-KMLSSQEIGTLITALGT 483
           +ELF+VEG+SA G+AKQ R+R  QA+LPL+GKILN+E+   D K++ ++EI  LI+++G 
Sbjct: 625 TELFIVEGESAAGNAKQARNRRFQAVLPLKGKILNIEKISSDLKVMENEEIKLLISSIGL 684

Query: 484 GIGQDSFDINKL 495
            +   ++  + L
Sbjct: 685 AVNPQTWRQDTL 696



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 47/68 (69%)

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788
              +GI++QR+KGLGEM A QLW+TT+NPD R L R+ + D  +A  +   LMG +V+ R
Sbjct: 867 DSMRGITVQRFKGLGEMMAQQLWDTTMNPDKRILRRISVQDGMRASKMLELLMGGDVQSR 926

Query: 789 REFIQENS 796
           +EFI  ++
Sbjct: 927 KEFIFTHA 934



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 53/124 (42%)

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           G  ++   A     + +  +          +   S     LRY KII++TDADVDGAH+R
Sbjct: 718 GTTVDTTEASSSDSVDNNNVTATDNLGNIPVDASSLAQLPLRYGKIILLTDADVDGAHLR 777

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
            LLL   FR  P L  +G +YI  PPLY IT  +     ++  +   Y    S  E    
Sbjct: 778 ILLLGLLFRICPQLYEHGRVYIACPPLYRITNMRKGNKARNGPNASAYTYAWSEEELPIA 837

Query: 575 FCDS 578
               
Sbjct: 838 INKE 841


>gi|42541279|gb|AAS19519.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|42541281|gb|AAS19520.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|42541285|gb|AAS19522.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|42541287|gb|AAS19523.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|110264867|gb|ABG57009.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264869|gb|ABG57010.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 403

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 243/405 (60%), Positives = 317/405 (78%), Gaps = 3/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     
Sbjct: 61  T-DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|10039319|dbj|BAB13320.1| DNA gyrase B subunit [Flexibacter sancti]
          Length = 481

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 224/474 (47%), Positives = 316/474 (66%), Gaps = 13/474 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALSS L + ++REG ++E  +  G+    +   G   ++T
Sbjct: 1   DKNTYKVSGGLHGVGVSCVNALSSLLHVTVRREGKLFEQEYSRGVPQYAVREIG-VSDET 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFY 225
           GT V F P ++IF    +N + L  RLREL++LN  ++I LID R  +          + 
Sbjct: 60  GTTVHFKPDNEIFKDITYNKEILAGRLRELAYLNRKIRIVLIDAREKDENGTPLTEIFYS 119

Query: 226 KGGIEAFVSYLDRH--KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIP 281
           +GGI  FVS LDR+  + PL+  PI ++      N+++++A+ +ND + EN+  + NNI 
Sbjct: 120 EGGIVEFVSMLDRNGRRNPLLPEPIFVETVDAGSNVAVEVAVIYNDSFSENIFSYVNNIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH++G R A+TR   SY +K+   +K K  V GDD REG ++++S+K+P+P+F  
Sbjct: 180 TIEGGTHVAGFRRAITRVFKSYGDKNKMFEKTKIEVTGDDFREGLSAIVSVKVPEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +S+V  VV+S V   L A+LEEHP EAK I+ KV+ A+  R+AAR+AR + +R
Sbjct: 240 QTKTKLGNSDVMGVVDSSVAAVLDAYLEEHPREAKTIINKVVLAAQAREAARKARQMVQR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K VL  + LPGKLADCSE DP+K EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE
Sbjct: 300 KSVLSGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLL 517
           +A   K+  ++EI  + TALG  IG +  D      KLRYHK+IIMTDADVDG+HI TL+
Sbjct: 360 KAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLAKLRYHKLIIMTDADVDGSHIATLI 419

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           LTF FR M +++  G++YI +PPLY + +GK   Y   E+  +  +   +  +E
Sbjct: 420 LTFIFRYMKAMVEQGYVYIAQPPLYLVKKGKEGIYAWTEDDRKGAVQQLANGKE 473


>gi|10039317|dbj|BAB13319.1| DNA gyrase B subunit [Flexibacter filiformis]
          Length = 481

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 224/474 (47%), Positives = 315/474 (66%), Gaps = 13/474 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ L + ++REG ++E  +  GI    +   G A + T
Sbjct: 1   DKNTYKVSGGLHGVGVSCVNALSTLLHVTVRREGKLFEQEYQRGIPQYAVREIGEA-DTT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFY 225
           GT V F P ++IF    +N + L  RLREL++LN  ++I+L D R  +        T + 
Sbjct: 60  GTTVHFKPDNEIFKDTTYNREILAGRLRELAYLNRKIRITLTDDREKDEAGNSISETFYS 119

Query: 226 KGGIEAFVSYLDRH--KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIP 281
           +GGI  FV  LDR   +  L+  PI I+      N+++++A+ +ND + EN+  + NNI 
Sbjct: 120 EGGIIEFVQMLDRSGRRNGLLPDPIFIEAHDASSNVAVEVAVIYNDSFSENIFSYVNNIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH++G R A+TR   SY +K+   +K K  V GDD REG ++++S+K+P+P+F  
Sbjct: 180 TIEGGTHVAGFRRAITRVFKSYGDKNKLFEKTKIEVTGDDFREGLSAIISVKVPEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +S+V  VV+S V   L A+LEEHP EAKII+ KV+ A+  R+AAR+AR + +R
Sbjct: 240 QTKTKLGNSDVMGVVDSSVAAVLDAYLEEHPREAKIIINKVVLAAQAREAARKARQMVQR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K VL  + LPGKLADCSE DP+K EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE
Sbjct: 300 KSVLSGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLL 517
           +A   K+  ++EI  + TALG  IG +  D     +KLRYHK+IIMTDADVDG+HI TL+
Sbjct: 360 KAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLI 419

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           LTF FR M +++  G++YI +PPLY + + K   Y   E+  +  +   +  +E
Sbjct: 420 LTFIFRYMKAMVEQGYVYIAQPPLYLVKKSKEQIYAWTEDDRKAAIQKLANGKE 473


>gi|13517001|dbj|BAB40383.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04443]
 gi|13517067|dbj|BAB40416.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC05558]
          Length = 474

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 223/475 (46%), Positives = 311/475 (65%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTLYPVKSIGET-DIT 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF+P   IF+   ++NYDTL +R+REL++LN  V I+L DKR+     E    T F
Sbjct: 60  GTIVTFVPDKSIFTQTVEYNYDTLANRMRELAYLNKGVTITLTDKRNKDDKGEFVAETFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ F+ +LD  ++PL+QS I ++G ++ I +++AM +N G+ EN+  + NNI   +
Sbjct: 120 SNEGLKEFIKFLDETREPLIQSVISMEGEKNGIPVEVAMIYNTGFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  V GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEEHP +AK +V+KV+ A+  R AA +AR++ +RK  
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQRKNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + +  LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSVGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY + +G   +Y  +++  ++ + +      I+ +
Sbjct: 420 FFRYMRELIEGGHVYIATPPLYLVKKGTKRRYAWNDKERDEIVESMKGGASIQRY 474


>gi|13517039|dbj|BAB40402.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04471]
          Length = 474

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 221/475 (46%), Positives = 311/475 (65%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHRDGKIWEQEYERGKTLYPVKSVGET-DIT 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF+P   IF+   ++NYDTL +R+REL++LN  V I++ DKR+     E    T F
Sbjct: 60  GTIVTFVPDKSIFTQTVEYNYDTLANRMRELAYLNKGVTITMTDKRNKDEKGEFIAETFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ F+ +LD  ++PL+QS I ++G ++ I +++AM +N G+ EN+  + NNI   +
Sbjct: 120 SNEGLKEFIKFLDETREPLIQSVISMEGEKNGIPVEVAMIYNTGFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  V GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEEHP +AK +V+KV+ A+  R AA +AR++ +RK  
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQRKNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + +  LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSVGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY + +G   +Y  +++  ++ + +      I+ +
Sbjct: 420 FFRYMRELIEGGHVYIATPPLYLVKKGAKRRYAWNDQERDEIVESMKGGASIQRY 474


>gi|315940101|gb|ADU56229.1| DNA gyrase subunit B [Nocardia rhamnosiphila]
          Length = 455

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 197/458 (43%), Positives = 279/458 (60%), Gaps = 32/458 (6%)

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G+A  + VTL  DG   V D+GRGIP  +H + GI   EV+MT+LHAGGKF+  SY V
Sbjct: 1   MAGHATRVEVTLLADGGVQVVDDGRGIPVAMHAQ-GIPTIEVVMTQLHAGGKFDSDSYAV 59

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG+SVVNALSS L+  +  +G  +  ++ + +    L V G     TGT + F 
Sbjct: 60  SGGLHGVGISVVNALSSRLEAEVDTDGYHWSQTYKDAVP-GQL-VQGEPTKTTGTTIRFW 117

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------- 214
               +F    +N++T+  RL+E++FLN  + I L D+R                      
Sbjct: 118 ADPAVFETTTYNFETVSRRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSDTAEAPKHDD 177

Query: 215 -------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
                   P+ +  T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN 
Sbjct: 178 NGEKPAAEPKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVSFNGKGPGHELEIAMQWNS 237

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  
Sbjct: 238 GYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDDIREGLA 297

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++ 
Sbjct: 298 AIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRSCNEHLAHWFEANPADAKTIVNKAVSSAQ 357

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AAR+AR+L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    
Sbjct: 358 ARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMY 417

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI
Sbjct: 418 QAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGI 455


>gi|261599945|dbj|BAI45223.1| DNA gyrase beta-subunit [Pullulanibacillus sp. D' C-1]
          Length = 419

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 217/422 (51%), Positives = 295/422 (69%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS  L +++   G I+   +  G+  
Sbjct: 1   EVIMTVLHAGGKFEGGGYKVSGGLHGVGASVVNALSEELWVKVALHGKIHYQVYKRGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L V G     TGT + F+P  +IF+    F +D L  R++EL+FLN  ++I+L D+R 
Sbjct: 61  ADLEVIGDTE-KTGTTIHFIPDPEIFTETTVFEFDILAKRIKELAFLNRGLKITLEDERE 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
              ++    Y+GGI++FV  L++ K  L + PI ++G +D IS+++AM++NDGY   +  
Sbjct: 120 NGKKKSYF-YEGGIKSFVKDLNKQKDVLHEEPIYVEGEKDGISVEVAMQYNDGYTSQIYS 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH  G ++ALTR I  Y +++   K++  +++GDD REG T+++S+K P
Sbjct: 179 YANNIHTHEGGTHEFGFKTALTRVINDYAKRTQIFKENDPNLMGDDVREGLTAIVSVKHP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL ++E R++ ES   +  + +L E+P  A+ IV K L AS  R AA++A
Sbjct: 239 DPQFEGQTKTKLGNTEARTITESLFGEKFARFLIENPDVARKIVDKGLMASRARAAAKKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LTRRK  L+++SLPGKLADCS +D K SE+++VEGDSAGGSAKQGR R  QAILPLRG
Sbjct: 299 RELTRRKSALEVSSLPGKLADCSSKDAKISEIYIVEGDSAGGSAKQGRDRHFQAILPLRG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+AR DK+LS+ EI  +ITALG G+    FDI K RYHK+IIMTDADVDG+HIRT
Sbjct: 359 KILNVEKARLDKILSNNEIRAIITALGCGV-STDFDIEKARYHKVIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|13358816|dbj|BAB33154.1| DNA gyrase B subunit [Chitinophaga pinensis]
          Length = 481

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 225/474 (47%), Positives = 312/474 (65%), Gaps = 13/474 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ L + +KREG ++E  +  GI    +   G    +T
Sbjct: 1   DKNTYKVSGGLHGVGVSCVNALSTLLHVTVKREGKLFEQEYSRGIPQYAVREIG-VSEET 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFY 225
           GT V F P  +IF    +N + L  RLREL++LN  ++I L D R  +        T + 
Sbjct: 60  GTTVHFKPDGEIFKDTTYNREILAGRLRELAYLNRKIRIVLTDDREKDDNGNSVSETFYS 119

Query: 226 KGGIEAFVSYLDRH--KKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           +GGI  FVS LDR+  +  L+  PI I+   +  N+++++A+ +ND + EN+  + NNI 
Sbjct: 120 EGGIIEFVSMLDRNGRRNALLPEPIFIEALDASSNVAVEVAVIYNDSFSENIFSYVNNIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH++G R A+TR   SY +K+   +K K  V GDD REG ++++S+K+P+P+F  
Sbjct: 180 TIEGGTHVAGFRRAITRVFKSYGDKNKMFEKTKVEVTGDDFREGLSAIVSVKVPEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +S+V  VV+S V   L A+LEEHP EAK I+ KV+ A+  R+AAR+AR + +R
Sbjct: 240 QTKTKLGNSDVMGVVDSSVAAVLDAYLEEHPREAKTIINKVVLAAQAREAARKARQMVQR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K VL  + LPGKLADCSE DPK  EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE
Sbjct: 300 KSVLSGSGLPGKLADCSENDPKLCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLL 517
           +A   K+  ++EI  + TALG  IG +  D      KLRYHK+IIMTDADVDG+HI TL+
Sbjct: 360 KAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLAKLRYHKLIIMTDADVDGSHIATLI 419

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           LTF FR M +++  G++YI +PPLY + + K   Y   EE  +  +   +  +E
Sbjct: 420 LTFIFRYMKAMVEQGYVYIAQPPLYLVKKSKEQIYAWTEEDRKAAIQQLANGKE 473


>gi|110264875|gb|ABG57013.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264877|gb|ABG57014.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 403

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 243/405 (60%), Positives = 317/405 (78%), Gaps = 3/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYCHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     
Sbjct: 61  T-DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|225017579|ref|ZP_03706771.1| hypothetical protein CLOSTMETH_01507 [Clostridium methylpentosum
           DSM 5476]
 gi|224949639|gb|EEG30848.1| hypothetical protein CLOSTMETH_01507 [Clostridium methylpentosum
           DSM 5476]
          Length = 661

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/608 (29%), Positives = 296/608 (48%), Gaps = 22/608 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     ++Y  +SI  LKG D V+KRP +  G  DG  G  H ++E+L N+IDE+ EGY
Sbjct: 1   MTRK-PKNTYGNESISSLKGADRVRKRPGVIFGS-DGLEGCEHSVFEILSNSIDEAREGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK---SYKVS 117
            D I +T   D S  V D GRGIP D +  E     E++   L+AGGK+N     SY+ S
Sbjct: 59  GDKIVITRFADHSIEVEDFGRGIPVDYNPIEERFNWELVFCELYAGGKYNTNNAESYEFS 118

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+G+G+      S ++ + I R+G +Y + F +G     L+   +    +GT++ + P
Sbjct: 119 LGLNGLGLCATQYSSEYMDVEIHRDGFVYTLHFEHGENVGGLMKRENGRKKSGTKIKWKP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              +F+  D   +     L+  + +N+ ++    ++           Y+ GI  +V  + 
Sbjct: 179 DLQVFTDIDIPAEYYHDILKRQAIVNNGLRFEFRNQTENGFETEEFLYEEGITDYVKEIA 238

Query: 238 RHKKPLMQSPIRIQ------GSRDNISIDLAMRWNDGYHENV-LCFTNNIPQKDGGTHLS 290
             +        + +        + +  + L +         +   + N+   + GG+   
Sbjct: 239 GEESLTSVQSWQAERTGRDRADKPDYRVKLGVALTFSNRVKLTEYYHNSSWLEHGGSPER 298

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            ++ A+  QI +Y++++    K++  V   D  +    V S       + +QTK+ + + 
Sbjct: 299 AVKQAMVSQIDAYLKQNGKYLKNESKVSFADIEDCLVLVSSSFSTQTSYENQTKKSITNK 358

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR--KGVLDIA 408
            +   +  F+   L  +  E+P+EA  I ++VL     R+ A + R   ++   G +D+A
Sbjct: 359 FIYEAMTEFLKHQLEVYFIENPIEAGKIAEQVLINKRSREKAEKTRLNLKKTLSGSVDLA 418

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +   K  DC  +D  + E+F+VEGDSA GS K GR  E QAI+P+RGKILN  +A +DK+
Sbjct: 419 NRVQKFVDCRTKDLSRREIFIVEGDSALGSCKLGRDAEFQAIIPVRGKILNCLKAGYDKI 478

Query: 469 LSSQEIGTLITALGTGIGQD--------SFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             +  I  +I  LG G+           SFD+N LR++K+II TDADVDG  IRTL+LT 
Sbjct: 479 FKNDIISDIIKVLGCGVEVKSKANKDLSSFDLNGLRWNKVIICTDADVDGFQIRTLILTM 538

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            +R  P+LI  G++YI + PL+ IT  K + +   E      L      +         G
Sbjct: 539 LYRLTPTLIDEGYVYIAQTPLFEITTKKKVYFAYSESEKTHILSMLGDEKFTLQRSKGLG 598

Query: 581 VISKNDLR 588
               + + 
Sbjct: 599 ENEPDMMW 606



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 101/308 (32%), Gaps = 39/308 (12%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+Y              + ++++            +++      + 
Sbjct: 345 TSYENQTKKSITNKFIYEAMTEFLK--HQLEVYFIENPIEAGKIAEQVLINKRSREKAEK 402

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN--CESDQEINVSLAS 636
             +  K  L   +D A ++ K +     +  +  I                     ++  
Sbjct: 403 TRLNLKKTLSGSVDLANRVQKFVDCRTKDLSRREIFIVEGDSALGSCKLGRDAEFQAIIP 462

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR----- 691
                LN +    +K +   I +  I V      V+ +   + SS    G ++ +     
Sbjct: 463 VRGKILNCLKAGYDKIFKNDIISDIIKVLGCGVEVKSKANKDLSSFDLNGLRWNKVIICT 522

Query: 692 --------IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS--------IGRK--- 732
                   I +  +   Y    +LI  G       P  L +               K   
Sbjct: 523 DADVDGFQIRTLILTMLYRLTPTLIDEGYVYIAQTP--LFEITTKKKVYFAYSESEKTHI 580

Query: 733 -------GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM-GDE 784
                    ++QR KGLGE     +W TT+ PDTR L++V   +A     +F  LM GD 
Sbjct: 581 LSMLGDEKFTLQRSKGLGENEPDMMWLTTMCPDTRRLVKVTRAEAEATSAMFD-LMLGDN 639

Query: 785 VEPRREFI 792
           ++ R++FI
Sbjct: 640 LQGRKDFI 647


>gi|148971299|gb|ABR20187.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 248/421 (58%), Positives = 310/421 (73%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS+WLKL I R+G  + M F  G   
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ FLPS   F   +F+YD L  RLRELSFLN+ V I L D R  
Sbjct: 61  APLAVVGDSP-KRGTEIHFLPSPLTFGTIEFHYDILARRLRELSFLNNGVSIFLKDLRHG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       + GG+  FV YL+R +  L  +     G ++ I++++AM+WN+ Y ENVLCF
Sbjct: 120 QE--ENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGITVEVAMQWNESYQENVLCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+ LR+A+TR +  ++E++  ++K K    GD  RE  T VLS+K+PD
Sbjct: 178 TNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDGMRESLTCVLSVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEVR  VE  V+D + ++L E P EA+IIV K+++A+  R+AAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD   LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 ELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDK++SSQEI TLITALGTGIG+D +   K+RYH+II    ADVDG+HIRTL
Sbjct: 358 ILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIHHDYADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|148470172|gb|ABQ66034.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 242/418 (57%), Positives = 325/418 (77%), Gaps = 1/418 (0%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF++ SYKVSGGLHGVG+SVVNALS  L L IKREG  +E  +  G    P+
Sbjct: 4   MTVLHAGGKFDENSYKVSGGLHGVGISVVNALSKKLTLSIKREGQRWEQEYATGDPVEPI 63

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
             TG+    TGT +TFLP S++F   +F+++ LQ+R +EL+FLN +++I+L D+R  + R
Sbjct: 64  APTGNC-RGTGTTITFLPDSEVFESIEFSFNRLQNRFKELAFLNDNLKITLKDEREGKKR 122

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
           E    Y+GG+ AFV+ +++ ++ +  + IR++G RD I ID A++WNDGY E+V  FTNN
Sbjct: 123 EAIFHYEGGVGAFVADINKGREAIHPTIIRVRGERDGIVIDAAIQWNDGYAESVYPFTNN 182

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ DGGTHL+G RSA+TR +++Y+++   + K+K +    D REG  ++LS+K+PDP+F
Sbjct: 183 IPQADGGTHLTGFRSAMTRALSAYLDREGVAAKNKITADSSDMREGLAAILSVKVPDPKF 242

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEVR VVE  + + L+ +L+EHP EA+ I  K+++A+  R+AAR+AR+ T
Sbjct: 243 SSQTKDKLVSSEVRPVVEGIIAEALTTFLDEHPKEAQAIAAKIVEAARAREAARKARETT 302

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK  +DIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GKILN
Sbjct: 303 RRKSAMDIANLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKILN 362

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           VERARFD++L S+EIGT+ITALGTGIG D F+  KLRYH+II+MTDADVDG+HIRTLL
Sbjct: 363 VERARFDRILESEEIGTMITALGTGIGPDEFNAAKLRYHRIILMTDADVDGSHIRTLL 420


>gi|84310474|gb|ABC55385.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis]
          Length = 409

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 209/410 (50%), Positives = 293/410 (71%), Gaps = 3/410 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+   YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L +
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEI 60

Query: 162 TGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G   + TGT   F+P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+
Sbjct: 61  IGETDH-TGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERK 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI
Sbjct: 120 NEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F 
Sbjct: 180 NTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTR
Sbjct: 240 GQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+I++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 300 RKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDG
Sbjct: 360 EKARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDG 408


>gi|13517031|dbj|BAB40398.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04467]
 gi|13517041|dbj|BAB40403.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04472]
          Length = 474

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 211/466 (45%), Positives = 303/466 (65%), Gaps = 10/466 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G     +
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNHLKATVYREGKIWEQEYSRGKAQYPVKSIGETE-LS 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF+P   IF+    ++Y+TL +R+REL++LN  + I + DKR+     E    T  
Sbjct: 60  GTVVTFIPDDTIFTQTTEYSYETLSNRMRELAYLNKGITIVITDKRNKDEKGEFISETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD  ++PL+ + I ++G ++ I +++AM +N G+ EN+  + NNI   +
Sbjct: 120 SQEGLKEFIKFLDATREPLINTVISMEGEKNGIPVEVAMIYNTGFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVSEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEEHP +AK IV+KV  A+  R AA +AR++ +RK  
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DCS++DP+  E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A 
Sbjct: 300 MGGGGLPGKLSDCSDQDPENCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           FFR M  LI +G +YI  PPLY + +G   +Y  +++  ++ + + 
Sbjct: 420 FFRYMRELIESGHVYIATPPLYLVKKGAKKRYAWNDKERDEIVESM 465


>gi|2853305|gb|AAC38148.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 419

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 235/416 (56%), Positives = 316/416 (75%), Gaps = 3/416 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  + K+SGGLHGV VSV+NALS  ++L I R G+I+  ++ +G   
Sbjct: 1   EVIMTVLHAGGKFDDNTNKLSGGLHGVRVSVINALSEKVELTIHRGGHIHTQTYRHGEPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  
Sbjct: 61  TPLAVVGDT-DKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREA 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ C
Sbjct: 120 DKH-DHFMYEGGIQAFVDHLNTNKTPIIERVFHFNSEREDGISVEVAMQWNDGFQENIFC 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+P
Sbjct: 179 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K+++A+   +AA +A
Sbjct: 239 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIINAARASEAAPKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGK+ADC E+DP   EL++VEG+SAGGSAKQGR+R+NQAI PL+G
Sbjct: 299 REMTRRKGALDLAGLPGKVADCQEKDPALFELYIVEGESAGGSAKQGRNRKNQAITPLKG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           KILNVE+ARFDKMLSS E+ TLITALG GIG+D  + +K R H IIIMTDADV+  
Sbjct: 359 KILNVEKARFDKMLSSLEVVTLITALGCGIGRDEDNPDKPRDHNIIIMTDADVEAR 414


>gi|190148874|gb|ACE63412.1| DNA gyrase B subunit [Pseudonocardia sp. S053]
          Length = 433

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 213/436 (48%), Positives = 284/436 (65%), Gaps = 18/436 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALSS L + I R+  ++   + +    
Sbjct: 1   EVIMTVLHAGGKFDDKSYAVSGGLHGVGVSVVNALSSALDVEIHRDKKVWRQHYEHSRP- 59

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G     TGT +TF    DIF    +N +T+  RL+E++FLN  + I L D+R+ 
Sbjct: 60  GPLRK-GEDTIRTGTSITFWADPDIFETTAYNLETISRRLQEMAFLNKGLTIVLRDERNG 118

Query: 217 EP---------------REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           E                +E T  Y GG+E FV++L+R K P+ +  +   G  +N  +++
Sbjct: 119 ESEEAAEPDAEGYVAKVKETTFHYPGGLEDFVAHLNRSKDPIHKKLVAFSGEAENHQVEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K    ++ GDD
Sbjct: 179 AMQWNSGYAESVYTFANTINTHEGGTHEEGFRAALTTTVNRYAREKKLLKDKDPALSGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK IV K
Sbjct: 239 IREGLAAIVSVKVREPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVQSAQARLAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILP+RGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI+
Sbjct: 359 GRDSMFQAILPIRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHKIV 417

Query: 502 IMTDADVDGAHIRTLL 517
           +MTDADVDG+HIRTLL
Sbjct: 418 LMTDADVDGSHIRTLL 433


>gi|84310486|gb|ABC55391.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii]
          Length = 409

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 209/410 (50%), Positives = 294/410 (71%), Gaps = 3/410 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+   YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+  + L +
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEI 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G   + TGT   F+P  +IF+    ++YD L +R+REL+FL   V I++ DKR  + R+
Sbjct: 61  IGETDH-TGTTTHFVPDPEIFTETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERK 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI
Sbjct: 120 NEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F 
Sbjct: 180 NTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTR
Sbjct: 240 GQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+I++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 300 RKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDG
Sbjct: 360 EKARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDG 408


>gi|319779376|ref|YP_004130289.1| Topoisomerase IV subunit B [Taylorella equigenitalis MCE9]
 gi|317109400|gb|ADU92146.1| Topoisomerase IV subunit B [Taylorella equigenitalis MCE9]
          Length = 630

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 199/572 (34%), Positives = 302/572 (52%), Gaps = 28/572 (4%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   T  ++ L H+I EV+DN+ DE+L G+A  I+VTLN D S TV D+GRGIP  LH 
Sbjct: 1   MY---TRTDNPL-HIIQEVIDNSADEALAGFAKKISVTLNEDLSVTVEDDGRGIPVGLHP 56

Query: 90  EEGISAAEVIMTRLHAGGKF---NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           EE +   E++ TRLHAGGKF   +  +Y  SGGLHGVGVSV NALS+ L++ + R+  ++
Sbjct: 57  EEHVPVVEIVFTRLHAGGKFNKKDGGAYAFSGGLHGVGVSVTNALSTRLEVTVTRDMGVH 116

Query: 147 EMSFIN-GILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
           ++ F N G +  PL     A    +GT V   P S  F       + L H LR  + L  
Sbjct: 117 QLVFENGGDVATPLEKIDIAPKRKSGTVVRVWPDSKYFDSSVIPINELIHLLRSKAVLLP 176

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK---PLMQSPIRIQGSRDNISI-- 259
            +++SL  +++ E       Y+ G+ +++S      +   PL      +Q   ++  +  
Sbjct: 177 GIEVSLKVEKTGEK--YKWQYESGLISYLSEELDGSELLIPLFSGQDYVQEGHESFELGE 234

Query: 260 --DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
                + W+         + N IP  +GGTH SGLR  L   + S+ E           +
Sbjct: 235 GASWVVAWSQEGPLVRESYVNLIPTTNGGTHESGLREGLYLALKSFAEMH-SLIPKGIKL 293

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
           + +D     + VLS K+ DP+F  Q KE+L S +   +V SFV      WL  +  E K 
Sbjct: 294 LPEDLFSRASFVLSAKVLDPQFQGQVKERLNSRDALRLVSSFVKTSFELWLNSNVDEGKK 353

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           + +    A     +  ++     ++    +A LPGKL DC   D  ++E+FLVEGDSAGG
Sbjct: 354 LAEF---AIKQAQSRTKSAQKVEKRKSSGVAVLPGKLTDCESNDASRTEVFLVEGDSAGG 410

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK--L 495
           SAK+GR +E QA+LPLRGK+LN      D++ S++EI  +  A+G      +   +   L
Sbjct: 411 SAKKGRDKEYQAVLPLRGKVLNSWEVDKDQLFSNKEIHDISVAIGVDPHCPTDFPDMSGL 470

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RY +I I++DADVDG+HI+ LLLT F++  P L+ NGF++I +PPL+ I      +    
Sbjct: 471 RYRRICILSDADVDGSHIQVLLLTLFYKHFPRLVENGFVFISQPPLFRIDVPAQGK---- 526

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
             + + Y ++    +  +    +K  I +  L
Sbjct: 527 RPARKFYCLDSEELQGTKDKLINKENIKETSL 558



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGD-EVEPRRE 790
           +++ R+KGLGEM+A QLWETT+NPDTR LL+V        + + +F  LMG  E   RR 
Sbjct: 558 LTISRFKGLGEMSAEQLWETTMNPDTRRLLQVSYGSNSLDELNRIFDTLMGKSESASRRA 617

Query: 791 FIQENSLPSALDI 803
            I+E    + LD+
Sbjct: 618 LIEEKGNLAQLDV 630


>gi|2182094|emb|CAA65022.1| DNA topoisomerase IV E subunit [Streptococcus pneumoniae]
          Length = 555

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 228/530 (43%), Positives = 321/530 (60%), Gaps = 18/530 (3%)

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN- 152
              EVI T LHAGGKF Q  YK SGGLHGVG SVVNALSSWL++ I R+G +Y+  F N 
Sbjct: 1   PTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENG 60

Query: 153 GILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           G     L   G+A  + TGT+VTF+P + IFS  DF Y+T+  RL E +FL  +V +SL 
Sbjct: 61  GKPVTTLKKIGTALKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLT 120

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           DKR+ E   I   Y+ G++ FVSYL+  K+ L       +G  +   +++A+++NDG+ +
Sbjct: 121 DKRTDEA--IEFHYENGVQDFVSYLNEDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSD 177

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+L F NN+  KDGGTH +GL+SA+T+ +  Y  K+   K+  +++ G D REG  +VLS
Sbjct: 178 NILSFVNNVRTKDGGTHETGLKSAITKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLS 237

Query: 332 IKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           I +P+   +F  QTK+KL S   R VV+  V D L+ +L E+   A  +++K + A   R
Sbjct: 238 ILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDAR 297

Query: 390 DAARRARDLTR--RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           +AAR+ARD +R  +K   D   L GKL     ++P K+EL+LVEGDSAGGSAKQGR R+ 
Sbjct: 298 EAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKF 357

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGK++N  +A+   +L ++EI T+I  +G G+G D F I    Y KIIIMTDAD
Sbjct: 358 QAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGAD-FSIEDANYDKIIIMTDAD 416

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYL 563
            DGAHI+TLLLTFF+R M  L+  G +YI  PPLY ++    + + + Y   +  LE+ L
Sbjct: 417 TDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEE-L 475

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFI---DDALKIDKLIKDFYPNHDK 610
           + Q             G ++ + L       +    I   I+D      +
Sbjct: 476 LKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERR 525



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 287 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 346

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 347 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 406

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 407 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 466

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 467 WTDGELEELLKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 526

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 527 NVLMGDKVEPRRKWIEDN 544


>gi|83700330|gb|ABC41013.1| DNA gyrase subunit B [Phenylobacterium lituiforme]
          Length = 425

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 290/425 (68%), Positives = 342/425 (80%), Gaps = 6/425 (1%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           VIMT LHAG KF+Q SYKVSGGLHGVGVSVVNAL  +LKL+I R G  +EM F  G   +
Sbjct: 1   VIMTVLHAGRKFDQNSYKVSGGLHGVGVSVVNALPDFLKLKIHRGGLTHEMEFRRGDAVS 60

Query: 158 PLVVTGSAG------NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           PL VTG++         TGTEVTFLPS+D F   +F+  TL+HRLREL+FLNS V I L 
Sbjct: 61  PLAVTGTSPKRDNGEFLTGTEVTFLPSTDTFRFIEFDLKTLEHRLRELAFLNSGVTIWLK 120

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D R  EP E  M Y+GGIEAFV +LD+ K PL++ PI ++G R+N+ +DLA+ WNDGYHE
Sbjct: 121 DLRGAEPFEEVMSYEGGIEAFVRHLDKAKTPLIKQPIVVRGKRENVEVDLALWWNDGYHE 180

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVLCFTNNIPQ+DGGTHL+  RSALTR I+ Y E S  +K++K SV G+D REG T VLS
Sbjct: 181 NVLCFTNNIPQRDGGTHLAAFRSALTRIISGYAESSGAAKREKVSVSGEDAREGLTCVLS 240

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+PDP+FSSQTK+KLVSSEVR  VES VN+GL  W EEHP EA++IV+K+ +A+  R+A
Sbjct: 241 VKVPDPKFSSQTKDKLVSSEVRPAVESLVNEGLGTWFEEHPNEARMIVQKIAEAAAAREA 300

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR+LTRRK  LDI SLPGKLADC E+DP KSE+FLVEGDSAGGSAKQ R+RENQAIL
Sbjct: 301 ARKARELTRRKSALDITSLPGKLADCQEKDPAKSEIFLVEGDSAGGSAKQARNRENQAIL 360

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGKILNVERARFDKMLSS ++GTLITALG GIG+D FDI KLRYHKI+IMTDADVDG+
Sbjct: 361 PLRGKILNVERARFDKMLSSDQVGTLITALGAGIGRDDFDIEKLRYHKIVIMTDADVDGS 420

Query: 512 HIRTL 516
           HIRTL
Sbjct: 421 HIRTL 425


>gi|109727202|gb|ABG45895.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264879|gb|ABG57015.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264883|gb|ABG57017.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|159146584|gb|ABW90736.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 402

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 242/404 (59%), Positives = 316/404 (78%), Gaps = 3/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     
Sbjct: 61  T-DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|198042684|gb|ACH81167.1| GyrB [Pseudoalteromonas sp. UST041101-043]
          Length = 408

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 249/410 (60%), Positives = 319/410 (77%), Gaps = 6/410 (1%)

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ 
Sbjct: 1   AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVP 60

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
           D PL V G +   TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R 
Sbjct: 61  DAPLAVIGDSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER- 118

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENV 273
            E +     Y+GGI+AFV YL+R+K P+ +        R+   IS++++M+WND Y EN+
Sbjct: 119 EENKSDHFKYEGGIQAFVEYLNRNKTPIHKGVFHFTHEREEDGISVEVSMQWNDAYQENI 178

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLS 331
            CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S
Sbjct: 179 YCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVS 238

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+PDP+FSSQTK+KLVSSEV+S VE  + +  + +L E+P +AKI+V K++DAS  R+A
Sbjct: 239 VKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDASRAREA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAIL
Sbjct: 299 ARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           PL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+II
Sbjct: 359 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRII 408


>gi|295102724|emb|CBL00269.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Faecalibacterium prausnitzii L2-6]
          Length = 663

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 180/663 (27%), Positives = 309/663 (46%), Gaps = 30/663 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              Y  +SI  LKG D V+KRP++  G  DG  G  H I+E++ N+IDE+ +G+ D I V
Sbjct: 4   KQEYGNESITSLKGADRVRKRPAVIFGS-DGVEGCAHSIFEIVSNSIDEARDGHGDTINV 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGVG 124
           T   DGS  V D GRG+P D +K E     E++   ++AGGK+   + +Y+ S GL+G+G
Sbjct: 63  TRCKDGSVIVEDFGRGMPVDWNKGEERYNWELLFCEMYAGGKYGEGEDNYEFSLGLNGLG 122

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +      S+W+   I R+G  Y + F  G     L      G  TG+ + + P  ++F+ 
Sbjct: 123 LCATQYASAWMTADIYRDGFHYHLDFQKGENVGGLHKEPYKGRRTGSIIHWKPDDEVFTD 182

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYL--D 237
            D      +  LR  + +N+ + ++  D++     + +P + +  Y+ GI  +V+    +
Sbjct: 183 IDVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWKESWCYEHGIADYVAETAGE 242

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-----VLCFTNNIPQKDGGTHLSGL 292
               P+        G       D  ++ +  +  +     +  + N+   + GG+    +
Sbjct: 243 DSLTPVFSCESEATGRDREDQPDYKVKMSAAFCFSNKVQLLEYYHNSSWLEHGGSPEHAV 302

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A   QI  Y++     KK + ++   D ++    V S       + +QTK+ + +  V
Sbjct: 303 RTAFVYQINKYLKDKNLYKKGESAISFQDVQDCLVYVSSSFSTRTSYENQTKKAITNKFV 362

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI--ASL 410
              +  F+   L  +  E P EA+ I ++VL     R+ A + R   ++     I  A+ 
Sbjct: 363 SQAMTDFLKHYLEVYFLEKPDEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQIDLANR 422

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
             K  DC  +D  + EL++VEGDSA G+ K  R  E QAI+P+RGKILN  +A + ++  
Sbjct: 423 VQKFVDCRTKDASRRELYIVEGDSAMGAVKTSRDSEYQAIMPIRGKILNCLKADYARIFK 482

Query: 471 SQEIGTLITALGTGI---GQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           S  I  LI  +G G+   G+ +     F+++ LR++KI+I TDADVDG  IRTL+LT  +
Sbjct: 483 SDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTLVLTMLY 542

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           R  P+LI+ G++YI + PLY IT      +   E     +L      +         G  
Sbjct: 543 RLTPTLINEGYVYIAESPLYEITTKDRTYFAYTEPEKATFLEEIGDKKYTIQRSKGLGEN 602

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
               +         ++   +             A +  +   ++       +A   A  L
Sbjct: 603 DPEMMW-----LTTMNPESRRLIKVMPTDVERTAQVFDILLGDNLAGRKEHIAQHGAEYL 657

Query: 643 NFI 645
           + +
Sbjct: 658 DDL 660



 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 108/320 (33%), Gaps = 39/320 (12%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+               + +++  +  +       ++++     + 
Sbjct: 347 TSYENQTKKAITNKFVSQAMTDFLK--HYLEVYFLEKPDEAQKICQQVLVNKQSREHAEK 404

Query: 579 KGVISKNDLRNFIDDALKIDKLIK---DFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
                K  L   ID A ++ K +          +   +E     G      D E   ++ 
Sbjct: 405 TRQSIKKTLSTQIDLANRVQKFVDCRTKDASRRELYIVEGDSAMGAVKTSRDSE-YQAIM 463

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIFSF----- 685
                 LN +     + +   +    I V     +   +  +E       ++        
Sbjct: 464 PIRGKILNCLKADYARIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVIC 523

Query: 686 ------GSKYK--------RIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTI 726
                 G + +        R+    I E Y+ I       +                  +
Sbjct: 524 TDADVDGYQIRTLVLTMLYRLTPTLINEGYVYIAESPLYEITTKDRTYFAYTEPEKATFL 583

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG K  ++QR KGLGE +   +W TT+NP++R L++V  TD  +   +F  L+GD + 
Sbjct: 584 EEIGDKKYTIQRSKGLGENDPEMMWLTTMNPESRRLIKVMPTDVERTAQVFDILLGDNLA 643

Query: 787 PRREFIQENS---LPSALDI 803
            R+E I ++    L   LD+
Sbjct: 644 GRKEHIAQHGAEYLD-DLDV 662


>gi|13517051|dbj|BAB40408.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04477]
          Length = 474

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 220/475 (46%), Positives = 307/475 (64%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTMYPVKSVGKT-DIT 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISL----IDKRSPEPREITMF 224
           GT VTF+P   IF+   ++NYDTL +R+REL++LN  V I+L          E    T F
Sbjct: 60  GTIVTFVPDKSIFTQTVEYNYDTLANRMRELAYLNKGVTITLLDKRNKDDKGEFVSETFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ F+ +LD  ++PL+QS I ++G ++ I +++AM +N G+ EN+  + NNI   +
Sbjct: 120 SNEGLKEFIKFLDETREPLIQSVISMEGEKNGIPVEVAMIYNTGFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  V GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEEHP +AK +V+KV+ A+  R AA +AR++ +RK  
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQRKNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + +  LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSVGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKPLNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY + +G   +Y  +++  ++ + +      I+ +
Sbjct: 420 FFRYMRELIEGGHVYIATPPLYLVKKGSKRRYAWNDQERDEIVESMKGGASIQRY 474


>gi|290892043|ref|ZP_06555040.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290558637|gb|EFD92154.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 380

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 166/380 (43%), Positives = 242/380 (63%), Gaps = 9/380 (2%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L++ + REG  Y   F  G +   +   G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IF+    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI   +GGTH SG +
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  ++   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R
Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358

Query: 354 SVVESFVNDGLSAWLEEHPL 373
           S+ +   ++ L+ ++ E+P 
Sbjct: 359 SITDKLFSEALNKFMMENPD 378


>gi|119369974|gb|ABL68001.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 239/421 (56%), Positives = 290/421 (68%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+Q SYKVSGGLHGVG+SVVNALS +L L I R+G  +   +  G   
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGISVVNALSEFLDLTIYRDGYEHHQRYALGEPC 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V   A N TGT V F PS  IFS    +YD L  RLRELSFLNS  +I L+D+R+ 
Sbjct: 61  APLEVVRPA-NRTGTIVRFKPSPRIFSDCTMHYDLLAKRLRELSFLNSGARIVLVDERAD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI AFV  L+R+K PL    I  Q  RD + +DLA++WND Y ENV C+
Sbjct: 120 KQ--DAFEYQGGIAAFVVDLNRNKDPLHPQVISFQAERDKVYVDLALQWNDSYQENVFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ LTR +  Y+E++  +K+ K ++ GDD REG T+VLS+K+ D
Sbjct: 178 TNNIPQRDGGTHLAGFRAGLTRTLNHYIEETGLAKRAKVALTGDDAREGLTAVLSVKVAD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  + K        R +         +A   + P   +   KK           R+AR
Sbjct: 238 PKFPRKPKTNSYPRRSRPLSSRCSTSLQAATSWKTPRLPRPQQKKWSRRPERARPPRKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC ERDP   EL+LVEGDSAGGSAKQ R R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQERDPSLCELYLVEGDSAGGSAKQARDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKMLSS E+GTLITALGTGIG+D F+ +KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMLSSAEVGTLITALGTGIGRDDFNADKLRYHRIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|84310484|gb|ABC55390.1| DNA gyrase subunit B [Bacillus vallismortis]
          Length = 409

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 208/410 (50%), Positives = 293/410 (71%), Gaps = 3/410 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+   YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+  + L +
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEI 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G   + +GT   F P  +IF+    ++YD L +R+REL+FL   V I++ DKR  + R+
Sbjct: 61  IGETDH-SGTTTRFFPDPEIFTETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERK 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI
Sbjct: 120 NEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F 
Sbjct: 180 NTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTR
Sbjct: 240 GQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+I++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 300 RKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDG
Sbjct: 360 EKARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDG 408


>gi|19909729|dbj|BAB87060.1| DNA gyrase subunit B [Microcystis wesenbergii NIES-104]
          Length = 381

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 183/381 (48%), Positives = 262/381 (68%), Gaps = 2/381 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I V +  DGS +V+D+GRGIPTD+H   G SA E ++T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCTHIEVDIKADGSVSVTDDGRGIPTDVHPTTGKSALETVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF    YKVSGGLHGVG+SVVNALS+W+ + + R+  ++   +  GI    LV 
Sbjct: 61  ILHAGGKFGSGGYKVSGGLHGVGISVVNALSAWVDVTVWRDHKVHTQRYERGIPVTELVS 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           + S G+ TGT V FLP ++IFS   +F+Y TL  RLREL++LN+ V+I+  D R  EP  
Sbjct: 121 SPSEGDKTGTRVNFLPDTEIFSQGIEFDYSTLSGRLRELAYLNAGVKITFSDYRPEEPHI 180

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNN 279
               Y+GGI+ +V+Y+ R K+ L +  I + G ++ I+I++A +W  D Y +N+L F NN
Sbjct: 181 EIYCYEGGIKEYVAYMCREKETLHKDIIYVSGEKNGINIEVAFQWCIDAYSDNILGFANN 240

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   DGGTHL GL++ LTR + +   K    K+++ ++ G++ REG T+V+S+K+P+P F
Sbjct: 241 IRTIDGGTHLEGLKAVLTRTLNNVARKRNKIKENEPNLAGENVREGLTAVISVKVPEPEF 300

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EVR +V+S V + L+ +LE++P  A  I++K + A    +AARRARDL 
Sbjct: 301 EGQTKTKLGNTEVRGIVDSLVGETLNEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLV 360

Query: 400 RRKGVLDIASLPGKLADCSER 420
           RRK VL+ + LPGKLADCSER
Sbjct: 361 RRKSVLESSPLPGKLADCSER 381


>gi|13517025|dbj|BAB40395.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04458]
          Length = 474

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 220/463 (47%), Positives = 301/463 (65%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G A + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHREGKIWEQEYERGKTMYPVKSVG-ASDMT 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF P   IF+    ++YDTL +R+REL++LN  V ISL DKR+     E    T F
Sbjct: 60  GTVVTFHPDKTIFTQTTEYSYDTLANRMRELAYLNKGVTISLTDKRNKDEKGEFVGETFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+++LD  + PL+Q+ I ++G ++ I +++AM +N G+ EN+  + NNI   +
Sbjct: 120 SEQGLKEFITFLDETRVPLIQNVISMEGEKNGIPVEVAMIYNTGFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEEHP +AK IV+KV  A+  R AA +AR++ +RK  
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTNYLEEHPEDAKQIVEKVKLAAQARHAAAKAREMVQRKNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DC+++DP   ELFLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A 
Sbjct: 300 MGGGGLPGKLSDCADQDPGNCELFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  LI  G +YI  PPLY + +G   +Y  D+   +  +
Sbjct: 420 FFRYMRELIEGGHVYIATPPLYLVKKGSKKRYAWDDGERDAII 462


>gi|291543196|emb|CBL16305.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Ruminococcus sp. 18P13]
          Length = 660

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/665 (25%), Positives = 299/665 (44%), Gaps = 30/665 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     + Y  +SI +LKG D V+KRP +  G  DG  G  H ++EV+ N+IDE+  G+
Sbjct: 1   MAKK--QADYGNESITMLKGADKVRKRPGVIFGS-DGLDGCEHSVFEVISNSIDEARAGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSG 118
            D I VT   D +  V D GRG P D +  E     E++   L+AGGK++    +Y  S 
Sbjct: 58  GDHIIVTRYQDQTIEVQDFGRGCPVDYNNTEKRYNWELVYCELYAGGKYDAEGDTYAYSL 117

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+G+G+      S ++ + I R+G  Y + F +G     L    +    TGT   + P 
Sbjct: 118 GLNGLGLCATQFASEFMDVEIFRDGFRYNLHFEHGNNVGGLKKEPTTQKKTGTRTRWKPD 177

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLD 237
            D+F+      +     LR  + +N ++  +   +       +    Y+ GI  +V  + 
Sbjct: 178 LDVFTDIQIPDEFFHDILRRQAIVNPNLLFTYRSQSEDGSFSVREFRYENGITDYVQEIV 237

Query: 238 RHKKPLMQSPIRIQGS--------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             K        + +             + I++A+ +++        + N+   + GG+  
Sbjct: 238 GDKAMTSIQHWQCEKKGRDRADKPEYKVRINVALTFSNQIKLT-EFYHNSSFLEHGGSPE 296

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
             +R A   QI SY++++    K++  +   D  +    V S       + +QTK+ + +
Sbjct: 297 RAVRQAFVSQIDSYLKQNSKYLKNESKITYPDIEDCLVLVSSGFSTQTSYENQTKKAITN 356

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDI 407
             +   +  F+   +  +  E+P EA  I +++L     R+ A R R   ++K  G +D+
Sbjct: 357 KFIYEAMTEFLKHQIEVYFIENPDEATRICEQILVNKRSRENAERTRLNLKKKLAGTIDL 416

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           +++  K  DC  +D  + EL++VEGDSA GS K  R  E QA++P+RGKILN  +A + K
Sbjct: 417 SNMVQKFVDCRTKDTARRELYIVEGDSALGSVKLAREAEFQAVIPVRGKILNCLKADYAK 476

Query: 468 MLSSQEIGTLITALGTGIGQDS--------FDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           +  ++ I  +I  LG G+   +        F +  LR+HKI+I TDADVDG  IRTL+LT
Sbjct: 477 IFKNEIITDIIKVLGCGVEVRTKANKDLSSFSLENLRWHKIVICTDADVDGFQIRTLILT 536

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             +R  P+LI  G++YI + PLY I       +   E+     L +    +         
Sbjct: 537 MLYRLTPTLIDEGYVYIAESPLYEINSKDKTYFAYTEKEKTKILSHLEGKKFTIQRSKGL 596

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           G          +     ++   +           +      +   ++ Q     ++    
Sbjct: 597 GENEPE-----MMSLTTMNPATRRLIQVTSDEAEKTFAAFDMLLGDNLQARKDFISEYGG 651

Query: 640 NRLNF 644
           + L  
Sbjct: 652 DYLEL 656



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 102/309 (33%), Gaps = 41/309 (13%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+Y              + ++++ +          +++      + 
Sbjct: 344 TSYENQTKKAITNKFIYEAMTEFLK--HQIEVYFIENPDEATRICEQILVNKRSRENAER 401

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYP---NHDKTFIEQAVISGVFNCESDQEINVSLA 635
             +  K  L   ID +  + K +          +   +E     G      + E   ++ 
Sbjct: 402 TRLNLKKKLAGTIDLSNMVQKFVDCRTKDTARRELYIVEGDSALGSVKLAREAEF-QAVI 460

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS- 694
                 LN +     K +   I    I V      V+ +   + SS      ++ +I   
Sbjct: 461 PVRGKILNCLKADYAKIFKNEIITDIIKVLGCGVEVRTKANKDLSSFSLENLRWHKIVIC 520

Query: 695 -----------------------NRIEENYLTILS-----LICNGDKIKITGPCS---LL 723
                                    I+E Y+ I       +                 +L
Sbjct: 521 TDADVDGFQIRTLILTMLYRLTPTLIDEGYVYIAESPLYEINSKDKTYFAYTEKEKTKIL 580

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
             +   G+K  ++QR KGLGE     +  TT+NP TR L++V   +A +    F  L+GD
Sbjct: 581 SHL--EGKK-FTIQRSKGLGENEPEMMSLTTMNPATRRLIQVTSDEAEKTFAAFDMLLGD 637

Query: 784 EVEPRREFI 792
            ++ R++FI
Sbjct: 638 NLQARKDFI 646


>gi|110612647|gb|ABG78286.1| GyrB [uncultured bacterium]
 gi|110612649|gb|ABG78287.1| GyrB [uncultured bacterium]
          Length = 405

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 248/408 (60%), Positives = 318/408 (77%), Gaps = 3/408 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L + ++R G ++E  + +G+ D P+  TG A   T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEELHMTVRRNGRVHEQHYRHGVPDAPMAETGDAT-TT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELS+LNS V I L D+RS   R+ T  Y+GGI
Sbjct: 60  GTQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLYDERS--QRQDTFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFV +L+++K  ++ +   +   +DNI ++L+M+WND Y E + CFTNNIPQ+DGGTH+
Sbjct: 118 TAFVEHLNKNKNVIIPTVFSMITEKDNIVVELSMQWNDSYQETLYCFTNNIPQRDGGTHM 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRTLNNYIESEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++VVES V +  + +L E+P  AK IV K++DA+  R+AARRAR++TRRKG LDIA 
Sbjct: 238 SEVKAVVESGVAEKFNDFLLENPSCAKAIVGKIIDAARAREAARRAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           SSQE+ TLITALG GIG D +D +K+RYH+IIIMTDADVDG+HIRTLL
Sbjct: 358 SSQEVATLITALGCGIGPDEYDPDKVRYHRIIIMTDADVDGSHIRTLL 405


>gi|326791469|ref|YP_004309290.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
 gi|326542233|gb|ADZ84092.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
          Length = 655

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 171/594 (28%), Positives = 287/594 (48%), Gaps = 19/594 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           ++  +YD  SI  LKG D V+ RP +  G  DG  G  H ++E+L N+IDE  EGY   I
Sbjct: 1   MREKTYDNQSISALKGADRVRLRPGVIFGS-DGIEGCQHSVFEILANSIDEFKEGYGHTI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVSGGLH 121
            VTL+ D S T+ D GRGIP D ++ E     E++   L+AGGK+N      Y+ S GL+
Sbjct: 60  KVTLHADHSITIEDFGRGIPVDYNEAEARYNWELVFCELYAGGKYNNNEGDNYEFSLGLN 119

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           G+G       S ++ + +KR+G IY + F  G     L  T +    TG+++ + P  D+
Sbjct: 120 GLGSCATQYSSEFMDVEVKRDGYIYNLHFEKGENIGGLRKTKAEYKQTGSKIHWKPDHDV 179

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK--GGIEAFVSYLDRH 239
           F+  + + +     L+  + +N +++    D+ S E           G  +      +  
Sbjct: 180 FTDVNVSSEYFYDVLKRQAVVNKNLEFIFTDEISNEKHVYLYEDGILGYAKEVAEEKNFT 239

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYH---ENVLCFTNNIPQKDGGTHLSGLRSAL 296
                +   + +   D     L  +    +      +  + N+   + GG+    +++A 
Sbjct: 240 DVVFTEQETKGKDREDRPEYKLKFQVAFCFCNEKNMLEYYHNSSYLEYGGSPDKAIKNAF 299

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
              I  Y++      KD++ +   D ++    + +       + +QTK+ + +  ++  +
Sbjct: 300 VYAIDQYLKNENLYNKDEKKITFVDIQDSLILISNSFSTVTSYENQTKKAITNKFIQEAI 359

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDIASLPGKL 414
           + ++ + L  +  E+   A +I K+VL     R+ A R R   R++  G +DI +   K 
Sbjct: 360 QEYLKEFLYIYFIENKDAAMLIAKQVLVNKRSREKAERTRINVRKQLSGSIDIGNRIKKF 419

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DC  +D  + EL++VEGDSA GS K GR  E Q I+P+RGKILN  +A +DK+  S  I
Sbjct: 420 VDCRTKDVTRRELYIVEGDSALGSCKLGRDSEFQGIMPVRGKILNCLKADYDKIFKSDII 479

Query: 475 GTLITALGTGIGQ--------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
             L+  LG GI           +F+++ LR++K+II TDADVDG  IRTL+LT  +  +P
Sbjct: 480 IDLLKVLGCGIEITSKHNKDLHTFELDNLRWNKVIICTDADVDGYQIRTLILTMLYALVP 539

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           +LI  G ++I + PLY I     + +   E    + L        I+       
Sbjct: 540 TLIKEGRVFIAETPLYEINTKDKVYFAYSEYEKTEILSKIKTKYTIQRSKGLGE 593



 Score = 94.3 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 105/307 (34%), Gaps = 32/307 (10%)

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
             +T +  Q    I N F+               + +++++++         +++     
Sbjct: 337 STVTSYENQTKKAITNKFIQEAIQEYLK--EFLYIYFIENKDAAMLIAKQVLVNKRSREK 394

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN--CESDQEINVS 633
            +   +  +  L   ID   +I K +     +  +  +                      
Sbjct: 395 AERTRINVRKQLSGSIDIGNRIKKFVDCRTKDVTRRELYIVEGDSALGSCKLGRDSEFQG 454

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIF----- 683
           +       LN +    +K +   I    + V     +  ++  ++    E  ++      
Sbjct: 455 IMPVRGKILNCLKADYDKIFKSDIIIDLLKVLGCGIEITSKHNKDLHTFELDNLRWNKVI 514

Query: 684 ---SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD---------------T 725
                     +I +  +   Y  + +LI  G       P   ++                
Sbjct: 515 ICTDADVDGYQIRTLILTMLYALVPTLIKEGRVFIAETPLYEINTKDKVYFAYSEYEKTE 574

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
           I S  +   ++QR KGLGE +   +WETT+ P++R L++V   +      +F  L+GD++
Sbjct: 575 ILSKIKTKYTIQRSKGLGENDPDMMWETTMCPESRRLIQVMPDNMEDTQTMFDVLLGDDL 634

Query: 786 EPRREFI 792
           + R++FI
Sbjct: 635 KGRKQFI 641


>gi|33186735|emb|CAE12281.1| gyrase B subunit [Vibrio chagasii]
          Length = 404

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 246/406 (60%), Positives = 314/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G   +PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQSPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + FS   F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  T-DQTGTEIRFWPSEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVDHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVS EV+S VE  + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSPEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|148470240|gb|ABQ66067.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 247/421 (58%), Positives = 314/421 (74%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L LRI+R G +YE  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEHLLLRIRRAGTLYEQEYEMGNPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+     A   TGTEV FLPS  IF+   F+YDT+  RL+E+SFLNS+++I L D+R  
Sbjct: 61  YPIRPV-EACEGTGTEVRFLPSPHIFTDTRFDYDTIARRLKEISFLNSNIKIYLRDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           + RE   + +GGI AFV YL+R++ PL  +          I +++A++W   Y E V CF
Sbjct: 118 DEREDLFWAEGGIRAFVEYLNRNRTPLHPTVFHCNVEEGGIGVEIALQWTRSYQETVFCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNN+PQ+DGGTHL+G RSALTR +T ++E+S  +K++K    GDD REG T+VLS+K+PD
Sbjct: 178 TNNVPQRDGGTHLTGFRSALTRTLTGFLEESGAAKREKVQATGDDAREGLTAVLSLKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+ VVE  + + L  +L EHP +   I +K+L+A+  R+AARRAR
Sbjct: 238 PKFSSQTKDKLVSSEVKPVVEGVLAERLKNFLWEHPRKPGQIAEKMLEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +LTRRKG LD+A LPGKLADC E+DP   ELFLVEGDSAGGSAKQ R R  QAILPL+GK
Sbjct: 298 ELTRRKGALDVAGLPGKLADCQEKDPALCELFLVEGDSAGGSAKQARDRRFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           I+NVE+A F+++LSS EI  LITALG GIG+D F +++LRYH+IIIMTDADVDG+HI TL
Sbjct: 358 IINVEKASFERVLSSGEIAALITALGCGIGKDDFHVSRLRYHRIIIMTDADVDGSHIHTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|312271570|gb|ADQ56140.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271572|gb|ADQ56141.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271592|gb|ADQ56151.1| DNA gyrase subunit B [Vibrio sp. HB0308-1A5]
 gi|312271620|gb|ADQ56165.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271622|gb|ADQ56166.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271714|gb|ADQ56212.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271828|gb|ADQ56269.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 211/375 (56%), Positives = 280/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|13517049|dbj|BAB40407.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04476]
          Length = 474

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 221/475 (46%), Positives = 309/475 (65%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTMYPVKSIGET-DIT 59

Query: 170 GTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF+P   IF+   ++NYDTL +R+REL++LN  V I+L DKR+     E    T F
Sbjct: 60  GTIVTFVPDKSIFTLTTEYNYDTLANRMRELAYLNKGVTITLTDKRNKDDKGEFVSETFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ F+ +LD  ++PL+QS I ++G ++   +++AM +N G+ EN+  + NNI   +
Sbjct: 120 SNEGLKEFIKFLDETREPLIQSVISMEGEKNGTPVEVAMIYNTGFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  V GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEEHP +AK +V+KV+ A+  R AA +AR++ +RK  
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQRKNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + +  LPGKL+DC E+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSVGGLPGKLSDCFEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY + +G   +Y  +++  ++ + +      I+ +
Sbjct: 420 FFRYMRELIEGGHVYIATPPLYLVKKGSKRRYAWNDQERDEIVESMKGGASIQRY 474


>gi|312271654|gb|ADQ56182.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271664|gb|ADQ56187.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271696|gb|ADQ56203.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271882|gb|ADQ56296.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 211/375 (56%), Positives = 280/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKHVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|159146570|gb|ABW90729.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 404

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 247/406 (60%), Positives = 318/406 (78%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+ +  ++ +G+ D PL + G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    
Sbjct: 61  TE-KTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV++L+R+K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVTHLNRNKTPIHEKVFHFNSEREDGIAVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + SY++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VESF+ D L+ +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|213556940|gb|ACJ53761.1| DNA gyrase B [Pseudoruegeria sp. HD-43]
          Length = 407

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 266/407 (65%), Positives = 319/407 (78%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS WL LRI   G  +   F +G     L V G
Sbjct: 1   HAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLDLRIWHNGKEHYARFEHGDCTKHLEVAG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            A  + GTEVTF+ S+D FS  ++ + TL++RLREL+FLNS V+I L D+R  EP ++ +
Sbjct: 61  DANGEKGTEVTFMASTDTFSDLNYVFKTLENRLRELAFLNSGVRIILRDERPAEPLQVEL 120

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GG+  FV YLDR K   M  PI + G RD I ++LAM WND YHENVL FTNNIPQ+
Sbjct: 121 CYEGGVREFVKYLDRSKASAMPEPIYMTGERDGIGVELAMWWNDSYHENVLPFTNNIPQR 180

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR I  Y   S  ++K+K +  GDD REG T VLS+K+PDP+FSSQT
Sbjct: 181 DGGTHLAGFRGALTRTINLYAGSSGIARKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQT 240

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR  VE  VN+ L  W EE+P +AK+IV K+++A++ R+AAR+AR+LTRRK 
Sbjct: 241 KDKLVSSEVRPAVEGMVNEKLGEWFEENPGQAKVIVGKIIEAALAREAARKARELTRRKT 300

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            +D+ASLPGKLADC E+DP KSE+FLVEGDSAGGSAKQGRSR NQA+LPLRGKILNVERA
Sbjct: 301 AMDVASLPGKLADCQEKDPAKSEIFLVEGDSAGGSAKQGRSRANQAVLPLRGKILNVERA 360

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           RFD+MLSSQEIGTLITALGTGIG+D FDI+KLRYHKI+IMTDADVDG
Sbjct: 361 RFDRMLSSQEIGTLITALGTGIGRDEFDISKLRYHKIVIMTDADVDG 407


>gi|312271596|gb|ADQ56153.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271598|gb|ADQ56154.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271604|gb|ADQ56157.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271606|gb|ADQ56158.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271608|gb|ADQ56159.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271610|gb|ADQ56160.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271612|gb|ADQ56161.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271616|gb|ADQ56163.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271618|gb|ADQ56164.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271624|gb|ADQ56167.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271626|gb|ADQ56168.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271628|gb|ADQ56169.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271630|gb|ADQ56170.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271632|gb|ADQ56171.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271634|gb|ADQ56172.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271636|gb|ADQ56173.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271640|gb|ADQ56175.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271642|gb|ADQ56176.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271648|gb|ADQ56179.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271652|gb|ADQ56181.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271662|gb|ADQ56186.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271666|gb|ADQ56188.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271668|gb|ADQ56189.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271670|gb|ADQ56190.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271672|gb|ADQ56191.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271674|gb|ADQ56192.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271676|gb|ADQ56193.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271680|gb|ADQ56195.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271682|gb|ADQ56196.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271686|gb|ADQ56198.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271688|gb|ADQ56199.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271690|gb|ADQ56200.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271694|gb|ADQ56202.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271698|gb|ADQ56204.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271700|gb|ADQ56205.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271702|gb|ADQ56206.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271706|gb|ADQ56208.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271708|gb|ADQ56209.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271710|gb|ADQ56210.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271716|gb|ADQ56213.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271718|gb|ADQ56214.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271720|gb|ADQ56215.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271722|gb|ADQ56216.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271724|gb|ADQ56217.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271726|gb|ADQ56218.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271730|gb|ADQ56220.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271732|gb|ADQ56221.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271734|gb|ADQ56222.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271736|gb|ADQ56223.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271738|gb|ADQ56224.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271742|gb|ADQ56226.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271744|gb|ADQ56227.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271746|gb|ADQ56228.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271750|gb|ADQ56230.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271752|gb|ADQ56231.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271754|gb|ADQ56232.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271756|gb|ADQ56233.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271758|gb|ADQ56234.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271760|gb|ADQ56235.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271762|gb|ADQ56236.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271764|gb|ADQ56237.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271766|gb|ADQ56238.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271768|gb|ADQ56239.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271774|gb|ADQ56242.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271776|gb|ADQ56243.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271778|gb|ADQ56244.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271780|gb|ADQ56245.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271782|gb|ADQ56246.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271784|gb|ADQ56247.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271786|gb|ADQ56248.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271788|gb|ADQ56249.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271790|gb|ADQ56250.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271792|gb|ADQ56251.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271794|gb|ADQ56252.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271796|gb|ADQ56253.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271798|gb|ADQ56254.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271800|gb|ADQ56255.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271802|gb|ADQ56256.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271806|gb|ADQ56258.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271810|gb|ADQ56260.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271814|gb|ADQ56262.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271818|gb|ADQ56264.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271820|gb|ADQ56265.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271822|gb|ADQ56266.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271824|gb|ADQ56267.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271826|gb|ADQ56268.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271830|gb|ADQ56270.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271832|gb|ADQ56271.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271834|gb|ADQ56272.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271836|gb|ADQ56273.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271838|gb|ADQ56274.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271840|gb|ADQ56275.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271844|gb|ADQ56277.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271846|gb|ADQ56278.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271848|gb|ADQ56279.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271850|gb|ADQ56280.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271852|gb|ADQ56281.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271854|gb|ADQ56282.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271856|gb|ADQ56283.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271858|gb|ADQ56284.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271860|gb|ADQ56285.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271866|gb|ADQ56288.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271868|gb|ADQ56289.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271870|gb|ADQ56290.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271872|gb|ADQ56291.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271874|gb|ADQ56292.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271876|gb|ADQ56293.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271880|gb|ADQ56295.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271884|gb|ADQ56297.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271886|gb|ADQ56298.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271888|gb|ADQ56299.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271890|gb|ADQ56300.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271892|gb|ADQ56301.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271894|gb|ADQ56302.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271896|gb|ADQ56303.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271898|gb|ADQ56304.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271900|gb|ADQ56305.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271902|gb|ADQ56306.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271906|gb|ADQ56308.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/375 (56%), Positives = 280/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|312271728|gb|ADQ56219.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 210/375 (56%), Positives = 280/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G ++  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKVHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|42541273|gb|AAS19516.1| DNA gyrase subunit B [Photobacterium iliopiscarium]
          Length = 405

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 242/407 (59%), Positives = 316/407 (77%), Gaps = 4/407 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ NG+   PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCNGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTTNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADVD 405


>gi|312271614|gb|ADQ56162.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271658|gb|ADQ56184.1| DNA gyrase subunit B [Vibrio cholerae O395]
 gi|312271660|gb|ADQ56185.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271712|gb|ADQ56211.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/375 (56%), Positives = 280/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|312271740|gb|ADQ56225.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/375 (56%), Positives = 280/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLTVVGDTE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|312271748|gb|ADQ56229.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271804|gb|ADQ56257.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/375 (56%), Positives = 280/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGETE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|19909727|dbj|BAB87059.1| DNA gyrase subunit B [Microcystis viridis NIES-102]
          Length = 381

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 182/381 (47%), Positives = 261/381 (68%), Gaps = 2/381 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HH++YEV+DN+IDE+L GY   I V +  DGS +V+D+GRGIPTD+H   G SA E ++T
Sbjct: 1   HHLVYEVVDNSIDEALAGYCTHIEVDIKADGSVSVTDDGRGIPTDVHPTTGKSALETVLT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF    YKVSGGLHGVG+SVVNALS+W+ + + R+  ++   +  GI    LV 
Sbjct: 61  ILHAGGKFGSGGYKVSGGLHGVGISVVNALSAWVDVTVWRDHKVHTQRYERGIPVTELVS 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           + S    TGT V FLP ++IFS   +F+Y TL  RLREL++LN+ V+I+  D R  EP  
Sbjct: 121 SPSQEEKTGTRVNFLPDTEIFSQGIEFDYSTLSGRLRELAYLNAGVKITFSDYRPEEPHI 180

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNN 279
            T  Y+GGI+ +V+Y+ R ++ L +  I + G ++ I+I++A +W  D Y +N+L F NN
Sbjct: 181 ETYCYEGGIKEYVAYMCRERETLHRDIIYVSGEKNGINIEVAFQWCIDAYSDNILGFANN 240

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   DGGTHL GL++ LTR + +   K    K+++ ++ G++ REG T+V+S+K+P+P F
Sbjct: 241 IRTIDGGTHLEGLKAVLTRTLNNVARKRNKIKENEPNLAGENVREGLTAVISVKVPEPEF 300

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EVR +V+S V + L+ +LE++P  A  I++K + A    +AARRARDL 
Sbjct: 301 EGQTKTKLGNTEVRGIVDSLVGETLNEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLV 360

Query: 400 RRKGVLDIASLPGKLADCSER 420
           RRK VL+ + LPGKLADCSER
Sbjct: 361 RRKSVLESSPLPGKLADCSER 381


>gi|91064759|emb|CAJ76131.2| DNA gyrase B subunit [Shewanella fidelis]
          Length = 416

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 246/410 (60%), Positives = 318/410 (77%), Gaps = 4/410 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G +YE  +  G  D P+  
Sbjct: 1   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVYEQFYTMGEPDEPIKE 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A  +TGTE+ F PS + FS  +F++D L  R+RELSFLNS V I L+D+R  E R+ 
Sbjct: 61  VGEAS-NTGTEIRFWPSEETFSDVNFHFDILAKRVRELSFLNSGVGIRLVDER--EDRDE 117

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNI 280
              Y+GGI AFV +L+ +K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNI
Sbjct: 118 FFKYEGGISAFVDFLNVNKTPVNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNI 177

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+G R ALTR + +Y+E+   +KK K +  GDD REG T+V+S+K+PDP+FS
Sbjct: 178 PQRDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTAATGDDAREGLTAVISVKVPDPKFS 237

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEV+S VE  + + L  +L EHP EAK+IV K++DA+  R+AAR+AR++TR
Sbjct: 238 SQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTR 297

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNV
Sbjct: 298 RKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 357

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+ARFDKMLSSQE+ TLITALG GIG+D +D +K RYH I+IMTDADVDG
Sbjct: 358 EKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDG 407


>gi|312271650|gb|ADQ56180.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271816|gb|ADQ56263.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271842|gb|ADQ56276.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271862|gb|ADQ56286.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271864|gb|ADQ56287.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271904|gb|ADQ56307.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 212/375 (56%), Positives = 281/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I LID+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|9971357|dbj|BAB12485.1| DNA gyrase B subunit [Salegentibacter salegens]
          Length = 474

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 214/463 (46%), Positives = 304/463 (65%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALSS LK  + R+  I+E  +  G    P+   G      
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSSTLKATVYRDNQIWEQEYEKGKPMYPVKPAGETE-LN 59

Query: 170 GTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT +TF P S IF    D+NYDTL  R+REL+FLN  +QI+L DKR      E      +
Sbjct: 60  GTVITFKPDSSIFQQSVDYNYDTLASRMRELAFLNKGIQITLTDKREVNDKGEYLSERFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+ +LD +++P++   I ++  +++I +++AM +N  + EN+  + NNI   +
Sbjct: 120 SEEGLKEFIKFLDGNREPIISHVIAMESEKNDIPVEVAMIYNTSFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  ++GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTTTLKKYADASGMLDKLKFEIVGDDFREGLTAIISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L  +LEE+P +AK I++KV+ A+  R+AA++ARD+ +RK  
Sbjct: 240 TKLGNREVTSAVSQSVSEMLENYLEENPNDAKTIIQKVILAAQARNAAKKARDMVQRKTA 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + I  LPGKL+DCSE+DP +SE+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSIGGLPGKLSDCSEQDPVQSEVFLVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             ++  ++EI  + TALG  IG +      + +KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 THRVFDNEEIKNIYTALGVTIGTEEDSKALNTDKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           F+R M  LI  G ++I  PPLY + +G   +Y   EE  ++  
Sbjct: 420 FYRYMKELIEGGHIFIATPPLYLVKKGSRKRYAWSEEERDEIA 462


>gi|148971391|gb|ABR20233.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 218/425 (51%), Positives = 297/425 (69%), Gaps = 5/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ +YKVSGGLHGVGVS VNALS  L + + + G+ Y +SF  G + 
Sbjct: 1   EVIMTVLHAGGKFDKDTYKVSGGLHGVGVSCVNALSKALDVNVCKGGHEYTISFARGKVV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT V+F+P   IFSV  ++Y+T+ +RLREL+FLN  ++I   D+R+ 
Sbjct: 61  APLKKLGESK-KRGTTVSFIPDEQIFSVTTYDYETIYNRLRELAFLNKGLEIIFKDERNT 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHEN 272
           +  E     +GGI +FV +L+  K PL Q PI I+G+++        ++AM+WN+ Y E 
Sbjct: 120 DHAEAVFNAEGGIVSFVQFLNETKTPLFQDPIYIKGTKELHDGTLEFEVAMQWNETYTET 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  + NNI  + GGTHL+G  +ALTR + SY++     K  K  + GDD REG  +++S 
Sbjct: 180 VFSYVNNIATRQGGTHLTGFSTALTRVLNSYIKNHNLLKNAKTPITGDDVREGMAAIISA 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+F  QTK+KL + +V S  +  V +  + +LEEHP  AKIIV K   A+  R+AA
Sbjct: 240 KVPNPQFEGQTKQKLGNGDVGSAAQQIVGEEFATYLEEHPSIAKIIVDKAALAAQAREAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LT+RK VLD A LPGKL DCSER P + E+++V GDSAGGSAK GR R  QAILP
Sbjct: 300 RKARELTQRKSVLDSARLPGKLTDCSERRPSEMEIYIVGGDSAGGSAKGGRDRRFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R  K+L + E+G++I+A G GIG+D F++ KLRYHKII+MTDADVDG+H
Sbjct: 360 IRGKILNVEKSRLQKVLQNTEVGSMISAFGCGIGKDGFNLEKLRYHKIILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|33187327|gb|AAP97526.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 407

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 208/413 (50%), Positives = 286/413 (69%), Gaps = 6/413 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+HI
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSHI 407


>gi|9971383|dbj|BAB12498.1| DNA gyrase B subunit [Sporocytophaga cauliformis]
          Length = 475

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 210/462 (45%), Positives = 293/462 (63%), Gaps = 11/462 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTGSAGND 168
           ++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G     
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIGETT-K 59

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITM 223
            GT VTF P   IF+    F+YDTL  R+RELSFLN  + I+  DKR      E +    
Sbjct: 60  RGTIVTFFPDETIFTQTTEFSYDTLSARMRELSFLNKGITITFTDKREVDEKGEFKTEVF 119

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
               G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + NNI   
Sbjct: 120 HSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEIPVEVALIYNTSYTENIFSYVNNINTH 179

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QT
Sbjct: 180 EGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVKVAEPQFEGQT 239

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA++AR++ +RK 
Sbjct: 240 KTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAKKAREMVQRKT 299

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           V+    LPGKL+DCSE+DP + E++LVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A
Sbjct: 300 VMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKA 359

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLT 519
              K+  ++EI  + TALG  +G           KLRYHK+IIM DADVDG+HI TL+LT
Sbjct: 360 MHHKVFENEEIRNIFTALGVTVGTAEDSKALNLEKLRYHKVIIMCDADVDGSHISTLILT 419

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           FFFR M  LI  G +YI  PPLY + +G   +Y  ++   + 
Sbjct: 420 FFFRFMKELIEEGHVYIAAPPLYLVKKGNKKEYAWNDVQRDQ 461


>gi|312271602|gb|ADQ56156.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271678|gb|ADQ56194.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271684|gb|ADQ56197.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271692|gb|ADQ56201.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271704|gb|ADQ56207.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271770|gb|ADQ56240.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271772|gb|ADQ56241.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271808|gb|ADQ56259.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271878|gb|ADQ56294.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/375 (56%), Positives = 280/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|312271590|gb|ADQ56150.1| DNA gyrase subunit B [Vibrio sp. HB0308-1A6]
 gi|312271600|gb|ADQ56155.1| DNA gyrase subunit B [Vibrio sp. HB0308-2A5]
 gi|312271638|gb|ADQ56174.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271644|gb|ADQ56177.1| DNA gyrase subunit B [Vibrio sp. L8M]
 gi|312271646|gb|ADQ56178.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271656|gb|ADQ56183.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271812|gb|ADQ56261.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/375 (56%), Positives = 280/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLSDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|209863973|gb|ACI88904.1| GyrB [Leptospirillum ferriphilum]
          Length = 418

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 206/423 (48%), Positives = 281/423 (66%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I + G ++  ++  G   
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLYLEIHQNGLVHRQTYHKGAPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F+++TL HR RE++FLN  + I   D+ + 
Sbjct: 61  APLAVFGETA-QRGTIIRFWPDMTIMETDQFSFETLAHRFREMAFLNPVLTIHFKDEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  + GG+++FVS+L+ +KKPL       +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFDGGVQSFVSFLNENKKPLHDVLFFRKNLEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T V+S+++P
Sbjct: 178 FANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGVISVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL SS V   +ESF+++ L    EE P  AK I +K +  +  R+AAR+A
Sbjct: 236 SPQFEGQTKAKLGSSWVSGAMESFLSEALQEKFEEDPQTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G + F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|241079549|ref|XP_002408893.1| DNA gyrase subunit B, putative [Ixodes scapularis]
 gi|215492575|gb|EEC02216.1| DNA gyrase subunit B, putative [Ixodes scapularis]
          Length = 538

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 192/534 (35%), Positives = 276/534 (51%), Gaps = 27/534 (5%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   T  ++ L H++ EV+DNA DE+L G+A  +TVTL  DG   V D+GRGIP  LH 
Sbjct: 1   MY---TRTDNPL-HIVQEVIDNAADEALAGFARTLTVTLLEDGGIQVEDDGRGIPVGLHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQ---KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           EE     E++ TRLHAGGKF++    +Y  SGGLHGVGVSV NALS  L++ + R+G   
Sbjct: 57  EENAPVVELVFTRLHAGGKFDKLNGGAYAFSGGLHGVGVSVTNALSRRLEVLVWRDGQAN 116

Query: 147 EMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           E+ F +G L+ PL  TG+     TGT V   P    F         L H L   + L   
Sbjct: 117 EIVFADGELEQPLTQTGTVGKRKTGTRVRVWPDPKYFDSAQIPLAQLTHILHSKAVLLEG 176

Query: 206 VQISLIDKRSPEPREITMFY---------KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           V + L+ +++ + ++                G+E  V   +  +           G   +
Sbjct: 177 VTVELVQQKTGQRQQWCYEDGLRGYLQEEMDGVELLVPLFEGRQYAPQDDDNFSAGEGAH 236

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             +  A+      +     + N IP   GGTH SGLR  L + + S+ E           
Sbjct: 237 WVVAWAL----DSNIVRESYVNLIPTPAGGTHESGLRDGLYQAVRSFAELH-SLIPKGVK 291

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           +  +D     + VLS K+ DP+F  Q KEKL S +   +V  +V + L   L  +  + +
Sbjct: 292 LQAEDVFARASFVLSAKVLDPQFQGQIKEKLNSRDAVRLVSGYVRNALELHLHANVDQGR 351

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
            + +  +  +  R  + +      ++    +A LPGKL DC   D + SELFLVEGDSAG
Sbjct: 352 KLAEVAVRQAQARTRSAQK---VEKRKSSGVAVLPGKLTDCESHDLESSELFLVEGDSAG 408

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--K 494
           GSAK GR +E QAILPLRGK+LN      D++ ++QEI  +  A+G        + +   
Sbjct: 409 GSAKMGRDKEFQAILPLRGKVLNAWEVDKDRLFANQEIHDISVAIGVDPHDAQSEPDLSG 468

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
           LRY +I I++DADVDG+HI+ LLLT FFR  P LI  G +Y+ +PPL+ +    
Sbjct: 469 LRYGRICILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHVYVARPPLFRVDVPA 522


>gi|6939879|dbj|BAA90676.1| DNA gyrase subunit B [Weeksella virosa]
          Length = 476

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 220/468 (47%), Positives = 317/468 (67%), Gaps = 9/468 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ L   + + G  Y   +  G     +   G   + +
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSNHLTAEVFKNGKHYIQEYEKGKPLYDVKQVGDT-DKS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFY 225
           GT VTF P + IF+  ++N++TL +RLRELS+LN  + I+L D+R  + +          
Sbjct: 60  GTTVTFTPDNTIFNELEYNFNTLANRLRELSYLNKGITITLTDERVKDEKGEPLLEVFHS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV ++D +++ +M + I ++G RD I +++AMR+N  Y+EN+  + NNI   +G
Sbjct: 120 DGGLKEFVEFIDGNREAIMDNVICMEGERDGIPVEVAMRYNTSYNENLHSYVNNINTHEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R ALTR +  Y +++F   K+K  ++GDD REG T+++S+K+ +P+F  QTK 
Sbjct: 180 GTHLAGFRRALTRTLKKYADENFNLTKEKVEIVGDDFREGLTAIISVKVMEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SEV   V+  V++ L+ +LEE+P+EAKIIV KV+ A+  R AA++AR++ +RK  +
Sbjct: 240 KLGNSEVSGAVDKIVSEMLTNFLEENPIEAKIIVDKVILAAKARQAAKKAREMVQRKNPM 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             + LPGKLADCS R+P++SE+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A  
Sbjct: 300 GGSGLPGKLADCSSRNPEESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKAMA 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+L ++EI  + TALG  IG +      +I+KLRYHK++IMTDADVDG+HI TL+LTFF
Sbjct: 360 HKVLDNEEIKNIYTALGVSIGTEEDSKALNISKLRYHKVVIMTDADVDGSHIATLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FR M  LI NG +YI  PPLY + +G   +Y   EE  E  +   +  
Sbjct: 420 FRYMKELIENGHIYIATPPLYLVKKGNKAEYAWGEEEREALVEKLAPD 467


>gi|209863969|gb|ACI88902.1| GyrB [Ferroplasma thermophilum]
          Length = 441

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 252/444 (56%), Positives = 326/444 (73%), Gaps = 26/444 (5%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL- 155
           EVIMT LHAGGKF+Q SYKVSGGLHGVGVS VNALSSWL+L ++REG ++++ F  G + 
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLIVRREGKVHQLEFARGFVQ 60

Query: 156 -----------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
                       +P+ + G   +  GTEV FLP + IF   + F+Y+ L  RLRELSFLN
Sbjct: 61  NRIIEQVDGVDVSPMKIVG-TTDKRGTEVHFLPDTQIFQQNNDFHYEILAKRLRELSFLN 119

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-------- 255
           + V+I L D+R+ +         GG+  FV +++ +KK L  +     G R         
Sbjct: 120 NGVRIRLKDERTGKE--DDFAGSGGVMGFVEFINANKKILHPNTFYAAGERPAETYGGIP 177

Query: 256 --NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
             +I ++++M+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +  +KK 
Sbjct: 178 GTSIGVEVSMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEANEIAKKQ 237

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K  V GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L  +LEE P 
Sbjct: 238 KVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKVLGEFLEERPN 297

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AK+I  K+++A   R+AAR+ARD+TRRKGVLD   LPGKLADC ERDP K E+++VEGD
Sbjct: 298 DAKLICLKIVEAVRAREAARKARDMTRRKGVLDGVGLPGKLADCQERDPAKCEIYIVEGD 357

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAKQGR R+ QAILPLRGK+LNVE+ARFDK+L+S++I TLITALGT IG+D F++ 
Sbjct: 358 SAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDKLLTSEQITTLITALGTSIGKDDFNLA 417

Query: 494 KLRYHKIIIMTDADVDGAHIRTLL 517
           KLRYH+IIIMTDADVDG+HIRTLL
Sbjct: 418 KLRYHRIIIMTDADVDGSHIRTLL 441


>gi|213391522|gb|ACJ46502.1| gyrase B subunit [Shewanella sp. BSw10008]
          Length = 419

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 245/408 (60%), Positives = 316/408 (77%), Gaps = 4/408 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  + +G+ D P+   G
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRAGKVYEQFYTHGVPDAPIKEIG 67

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            A   TGTE+ F PSS  F+  +F+++ L  R+RELSFLNS V I L+D+R  +      
Sbjct: 68  DA-VKTGTELRFWPSSQTFTDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKD--EFF 124

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ CFTNNIPQ
Sbjct: 125 KYEGGISAFVDYLNRNKTPINKDVFHFSQERDDGITVEVAMQWNDGYQENIFCFTNNIPQ 184

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL G R ALTR + +Y+E+   +KK K S  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 185 RDGGTHLVGFRGALTRNLNNYMEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQ 244

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRK
Sbjct: 245 TKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRK 304

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 305 GALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 364

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG
Sbjct: 365 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKARYHNIIIMTDADVDG 412


>gi|253826362|gb|ACT36484.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 222/408 (54%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKTLSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|42541267|gb|AAS19513.1| DNA gyrase subunit B [Photobacterium phosphoreum]
          Length = 405

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 241/407 (59%), Positives = 316/407 (77%), Gaps = 4/407 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADVD 405


>gi|33186729|emb|CAE12278.1| gyrase B subunit [Vibrio gigantis]
 gi|33186731|emb|CAE12279.1| gyrase B subunit [Vibrio crassostreae]
          Length = 404

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 246/406 (60%), Positives = 315/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|6939649|dbj|BAA90673.1| DNA gyrase subunit B [Elizabethkingia meningoseptica]
          Length = 476

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 216/468 (46%), Positives = 312/468 (66%), Gaps = 9/468 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ +   + R+G++Y+  +  G   + +   G + +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTDMITTVFRDGHVYQQKYQKGRAVSEVEKIGDS-DKK 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFY 225
           GT+  F P   IF+   +NYDTL  RLREL++LN  + I+L D+R+ +        T   
Sbjct: 60  GTQQFFQPDDTIFTELVYNYDTLASRLRELAYLNRGITITLTDERTKDENGNFKVETFHS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG++ FV ++D +++ +M+  I ++G RD+I +++AMR+N  ++EN+  + NNI   +G
Sbjct: 120 EGGLKEFVEFIDGNRESIMEHVIFMEGERDDIPVEVAMRYNTSFNENLHSYVNNINTHEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R ALTR +  Y +      K+K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHLAGFRRALTRTLKKYADDLGLPAKEKVEITGDDFREGLTAVISVKVMEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SEV   V+  V + L+ +LEE+P EAK IV+KV+ A+  R AA++AR++ +RK  +
Sbjct: 240 KLGNSEVSGAVDKIVGEMLTNFLEENPNEAKTIVQKVVLAAKARQAAKKAREMVQRKSPM 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             + LPGKL+DCS +DP +SELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++  
Sbjct: 300 GGSGLPGKLSDCSSKDPAESELFLVEGDSAGGTAKQGRDRLFQAILPLRGKILNVEKSML 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  + TALG  +G +         KLRYHKI+IMTDADVDG+HI TL+LTFF
Sbjct: 360 HKVYDNEEIKNIYTALGVSVGTEEDSKALNLTKLRYHKIVIMTDADVDGSHISTLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FR M  LI NG++YI  PPLY + +G    Y  +E+  E+  +  S  
Sbjct: 420 FRYMKELIENGYVYIASPPLYLVKKGNKKVYAWNEKEREELTMELSKD 467


>gi|198250533|gb|ACH85248.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
 gi|198250537|gb|ACH85250.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
 gi|199599923|gb|ACH91039.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
 gi|253826356|gb|ACT36481.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
 gi|253826374|gb|ACT36490.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
 gi|253826380|gb|ACT36493.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 222/408 (54%), Positives = 300/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|213391516|gb|ACJ46499.1| gyrase B subunit [Pseudoalteromonas sp. BSw20211]
          Length = 423

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 250/411 (60%), Positives = 320/411 (77%), Gaps = 6/411 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG +YE  +  G+ D PL   G
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVPDAPLAAIG 67

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            +   TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E +    
Sbjct: 68  DSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHF 125

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIP 281
            Y+GGI AFV YL+R+K P+ +        R+   IS++++M+WND + EN+ CFTNNIP
Sbjct: 126 KYEGGIRAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDAFQENIYCFTNNIP 185

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRF 339
           Q+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+F
Sbjct: 186 QRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKF 245

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DA+  R+AAR+AR++T
Sbjct: 246 SSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDAARAREAARKAREMT 305

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILN
Sbjct: 306 RRKGAMDLAGLPGKLADCQEKDPVQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 365

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           VE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTDADVDG
Sbjct: 366 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDG 416


>gi|148470192|gb|ABQ66044.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 247/421 (58%), Positives = 316/421 (75%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVI T LHAGGKF++ SYKVSGGLHGVGVSVVNALS+   L I+REG ++E  +  G  +
Sbjct: 1   EVIKTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKQTLAIRREGELWEQEYHCGDPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGT V F P  ++  V  F     + R REL++LN  + I L D+R  
Sbjct: 61  APIAAKGPAK-GTGTTVHFRPDPEVLKVPSFLLHAWKKRFRELAYLNDGLTILLNDERGD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             RE    Y+GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  F
Sbjct: 120 RKREGVYHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+G RSA+TR +  Y+E+   + K K ++   D REG T+VLS+K+PD
Sbjct: 180 TNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+AR
Sbjct: 240 PKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+TRRKG LDIA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 300 DITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFD+ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 360 ILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|73747862|gb|AAZ82832.1| gyrase B subunit [Vibrio cyclitrophicus]
          Length = 404

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 248/406 (61%), Positives = 316/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|42541289|gb|AAS19524.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|42541291|gb|AAS19525.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|42541293|gb|AAS19526.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 402

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 241/403 (59%), Positives = 315/403 (78%), Gaps = 3/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     
Sbjct: 61  T-DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|13358820|dbj|BAB33156.1| DNA gyrase B subunit [Porphyromonas levii]
          Length = 477

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 231/475 (48%), Positives = 317/475 (66%), Gaps = 9/475 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ L   + R+G IY+  +  GI    + V G   + T
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSTKLVAEVYRDGKIYKQEYSKGIPQTEVEVIGET-DRT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFY 225
           GT VTFLP   IF V  + Y+ L +RLREL++LN+ V+ISL D         PR  T + 
Sbjct: 60  GTSVTFLPDDSIFMVTVYEYNILANRLRELAYLNAGVKISLTDFRDRDEEGNPRSQTFYS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           + G++ FV YLD  K+ LM+  I +   + ++ +++AM +N  ++ENV  + NNI   +G
Sbjct: 120 QEGLKEFVHYLDSSKEHLMEEVIHMVNDKGDMPVEVAMTYNTTFNENVYSYVNNINTIEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R ALTR +  Y + S   +K+K  V+GDD REG T+V+SIK+ +P+F  QTK 
Sbjct: 180 GTHLTGFRRALTRTLKKYADDSGILEKEKVEVLGDDFREGLTAVVSIKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SE    V++ V++ L+ +LEEHP EA++IV KV+ A+  R AA+RAR++ +RKG +
Sbjct: 240 KLGNSEAVGAVDAAVSEALTVFLEEHPKEARLIVDKVVLAAKARMAAKRAREMVQRKGPM 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADC  RDP+  ELFLVEGDSAGG+AKQGR    QAILPLRGKILNVE+A  
Sbjct: 300 FSGGLPGKLADCRSRDPEICELFLVEGDSAGGTAKQGRDSMFQAILPLRGKILNVEKAMV 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            ++L +QEI  + TALG  IG +      +I+KLRYHK+IIMTDADVDG+HI TLLLTFF
Sbjct: 360 HRVLENQEIQAMYTALGVSIGTEEDPKALNIDKLRYHKVIIMTDADVDGSHIATLLLTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           FRQM  LI  G++YI  PPLY   +G  ++Y  ++E  + ++      +E ++  
Sbjct: 420 FRQMRVLIERGYVYIATPPLYQCKKGDVIRYCWNDEERQAFIEKYGDGDENKIIT 474


>gi|42541275|gb|AAS19517.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|42541277|gb|AAS19518.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|86651907|gb|ABD14441.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|86651913|gb|ABD14444.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|86651917|gb|ABD14446.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|86651919|gb|ABD14447.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|86651933|gb|ABD14449.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651937|gb|ABD14451.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651939|gb|ABD14452.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651941|gb|ABD14453.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651943|gb|ABD14454.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651945|gb|ABD14455.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651949|gb|ABD14457.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651951|gb|ABD14458.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651953|gb|ABD14459.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651955|gb|ABD14460.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651957|gb|ABD14461.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651959|gb|ABD14462.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651961|gb|ABD14463.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651963|gb|ABD14464.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651965|gb|ABD14465.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651976|gb|ABD14466.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651978|gb|ABD14467.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|110264871|gb|ABG57011.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264885|gb|ABG57018.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264889|gb|ABG57020.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 401

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 241/403 (59%), Positives = 315/403 (78%), Gaps = 3/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     
Sbjct: 61  T-DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|30580460|sp|Q9FAX2|GYRB_FLEJA RecName: Full=DNA gyrase subunit B
 gi|10039313|dbj|BAB13317.1| DNA gyrase B subunit [Flexibacter japonensis]
          Length = 481

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 222/474 (46%), Positives = 319/474 (67%), Gaps = 13/474 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ L + + REG I+E  +  G+    +   G A  DT
Sbjct: 1   DKNTYKVSGGLHGVGVSCVNALSTVLHVTVHREGKIFEQEYHRGVPQYAVREIG-ATTDT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFY 225
           GT   F P  +IF+   +N + L  RLREL++LN  ++I+L D+R  + +        + 
Sbjct: 60  GTTTHFKPDGEIFTETSYNREILAGRLRELAYLNRKIRITLTDEREKDEQGNVLSEPFYS 119

Query: 226 KGGIEAFVSYLDRH--KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIP 281
           +GGI  FV  LDR+  +  L+ +PI I+      N+++++++++ND + EN+  + NNI 
Sbjct: 120 EGGIMEFVQMLDRNGRRNSLLPAPIFIEAHDAPSNVAVEVSLQYNDSFSENIFSYVNNIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH++G R A+TR   +Y +++   +K K  V GDD REG ++++S+K+P+P+F  
Sbjct: 180 TIEGGTHVAGFRRAITRVFKTYGDRNKLFEKSKIEVTGDDFREGLSAIVSVKVPEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +S+V  VV+S V D L+A+LEEHP EA+ ++ KV+ A+  R+AAR+AR L +R
Sbjct: 240 QTKTKLGNSDVMGVVDSAVADVLNAYLEEHPKEARTVINKVVLAAQAREAARKARQLVQR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K VL  + LPGKLADCSE DP+K EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE
Sbjct: 300 KSVLTGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLL 517
           +A   K+  ++EI  + TALG  IG +  D     +KLRYHK+IIMTDADVDG+HI TL+
Sbjct: 360 KAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLI 419

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           LTF FR M +L+  G++YI +PPLY + +GK   Y   EE  +  +   +  +E
Sbjct: 420 LTFVFRYMKALVEQGYVYIAQPPLYLVKKGKEQIYAWTEEQRKAAVATLAGGKE 473


>gi|42541297|gb|AAS19528.1| DNA gyrase subunit B [Photobacterium angustum]
          Length = 402

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 244/404 (60%), Positives = 316/404 (78%), Gaps = 3/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I+R G+IY+  + +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIQRAGHIYQQVYRHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               TGT + F PS D F+  +F+YD L  RLRELSFLNS V I+L D+R  + +E    
Sbjct: 61  TE-KTGTRIRFWPSEDTFTNIEFHYDILAKRLRELSFLNSGVSINLSDER-EDGKEDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+
Sbjct: 119 YEGGIRAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|213391528|gb|ACJ46505.1| gyrase B subunit [Shewanella sp. BSw10166]
          Length = 419

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 243/408 (59%), Positives = 317/408 (77%), Gaps = 4/408 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  + +G+ D P+   G
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRAGKVYEQFYTHGVPDAPIKEIG 67

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            A   TGTE+ F PS D F+  +F+++ L  R+RELSFLNS V I L+D+R  +      
Sbjct: 68  DA-VKTGTELRFWPSGDTFTNVEFHFEILAKRVRELSFLNSGVGIRLVDERDGKD--EFF 124

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ CFTNNIPQ
Sbjct: 125 KYEGGISAFVDYLNRNKTPINKDVFHFSHEREDGITVEVAMQWNDGYQENIFCFTNNIPQ 184

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + +Y+E+   +KK K +  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 185 RDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQ 244

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRK
Sbjct: 245 TKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRK 304

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 305 GALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 364

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG
Sbjct: 365 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDG 412


>gi|13517005|dbj|BAB40385.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04445]
          Length = 474

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 222/475 (46%), Positives = 310/475 (65%), Gaps = 10/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTLFPVKSIGET-DIT 59

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF+P   IF+   ++NYDTL +R+REL++LN  V I+L DKR+     E    T F
Sbjct: 60  GTIVTFVPDKSIFTQTVEYNYDTLANRMRELAYLNKGVTITLTDKRNKDDKGEFVAETFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ F+ +LD  ++PL+QS I ++G ++ I +++AM +N G+ EN+  + NNI   +
Sbjct: 120 SNEGLKEFIKFLDETREPLIQSVISMEGEKNGIPVEVAMIYNTGFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  V GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEEHP +AK +V+KV+ A+  R AA +AR++ +RK  
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQRKNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + +  LPGKL+DCSE+DP K E+FLVEGDSAG +AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MSVGGLPGKLSDCSEQDPTKCEVFLVEGDSAGVTAKQGRDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           FFR M  LI  G +YI  PPLY + +G   +Y  +++  ++ + +      I+ +
Sbjct: 420 FFRYMRELIEGGHVYIATPPLYLVKKGAKRRYAWNDQERDEIIESMKGGASIQRY 474


>gi|213391514|gb|ACJ46498.1| gyrase B subunit [Pseudoalteromonas sp. BSw10014]
          Length = 423

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 250/411 (60%), Positives = 319/411 (77%), Gaps = 6/411 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG ++E  +  G+ D PL V G
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQFYTMGVPDAPLAVIG 67

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            +    GTE+ F PS + F+  DF+YD L  RLRELSFLNS V I L D+R  E +    
Sbjct: 68  DSE-TNGTEIRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-EENKSDHF 125

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIP 281
            Y+GGI AFV YL+R+K P+ +        R+   IS++++M+WND + EN+ CFTNNIP
Sbjct: 126 KYEGGIRAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDAFQENIYCFTNNIP 185

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRF 339
           Q+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+F
Sbjct: 186 QRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKF 245

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEV+S VE  + +  + +L E+PL+AKI+V K++DA+  R+AAR+AR++T
Sbjct: 246 SSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAARKAREMT 305

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILN
Sbjct: 306 RRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 365

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           VE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+IIIMTDADVDG
Sbjct: 366 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDG 416


>gi|84310476|gb|ABC55386.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 409

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 210/410 (51%), Positives = 293/410 (71%), Gaps = 3/410 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+   YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L V
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G   + TGT   F+P  +IF     ++YD L +R+REL+FL   V I++ DKR  + R+
Sbjct: 61  IGDT-DKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERK 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI
Sbjct: 120 NEYHYEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +G ++ LTR I  Y  +    K++  ++ GDD REG T+++SIK PDP+F 
Sbjct: 180 NTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE R++ ++  +  L  +L E+P  A+ IV+K L A+  R AA++AR+LTR
Sbjct: 240 GQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+I++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 300 RKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDG
Sbjct: 360 EKARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDG 408


>gi|285013336|gb|ADC32656.1| DNA gyrase subunit B [Pseudomonas putida]
          Length = 405

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 240/408 (58%), Positives = 315/408 (77%), Gaps = 4/408 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            +   TGT + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +      
Sbjct: 61  ESE-TTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFF 117

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GG+ AFV YL+ +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ
Sbjct: 118 KYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQ 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL G RS+LTR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQ
Sbjct: 178 RDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VE  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRK
Sbjct: 238 TKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+
Sbjct: 298 GALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           ARFDKM+SSQE+GTLITALG GIG++ ++I+KLRYH IIIMTDADVDG
Sbjct: 358 ARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDG 405


>gi|167772153|ref|ZP_02444206.1| hypothetical protein ANACOL_03528 [Anaerotruncus colihominis DSM
           17241]
 gi|167665951|gb|EDS10081.1| hypothetical protein ANACOL_03528 [Anaerotruncus colihominis DSM
           17241]
          Length = 661

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/664 (26%), Positives = 307/664 (46%), Gaps = 32/664 (4%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             + + Y  DSI  LKG D V+KRP +  G  DG  G  H ++E+L N+IDE+ EG+ + 
Sbjct: 3   KKRTTDYGNDSISSLKGADRVRKRPGVIFGS-DGLEGCQHAMFEILSNSIDEAREGHGNK 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF---NQKSYKVSGGL 120
           I +T   D S  + D GRGIP D ++ EG    E++   L+AGGK+     +SY+ S GL
Sbjct: 62  ILITRYRDQSIEIEDFGRGIPVDFNQREGRYNWELVFCELYAGGKYQTNEGESYEYSLGL 121

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +G+G+      S ++ + I R+G  Y + F +G     L    +    TG+++ + P   
Sbjct: 122 NGLGLCATQYASEYMDVEIYRDGMKYTLHFEHGENVGGLHKEETRRKQTGSKIRWKPDLQ 181

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F+  D   +     ++  + +N  V   L ++ +    E T  Y+ GI  +V+  +   
Sbjct: 182 VFTEIDIPLEFYMDTIKRQAVVNDGVTFILKNETASGFEETTFQYENGIVDYVT--ELAG 239

Query: 241 KPLMQSPIRIQGSR----------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +  +      +  R            + + +A  +++   +    + N+   + GG+   
Sbjct: 240 EEPLTPVQFWKAERRGRDREDKPEYKVRLSVAFCFSNR-VKRCEYYHNSSWLEYGGSPER 298

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            ++ A    I  Y++ +   +K +  +   D  +    V S       + +QTK+ + + 
Sbjct: 299 AVKLAFVYMIDGYIKNAGKYQKGESKITFADVEDCLVLVSSSFSTQTSYENQTKKAITNK 358

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDIA 408
            +   +  F+   +  +  E+P EA  I ++VL     R+ A R R   ++K  G +D++
Sbjct: 359 FIYEAMNDFLRHQMEVYFLENPDEAARIAEQVLINKRSRENAERTRLNLKKKLAGTVDMS 418

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +   K  DC  +D  + E+++VEGDSA GS K GR  E QAI+P+RGKILN  +A +DK+
Sbjct: 419 NRVQKFVDCRTKDVSRREIYIVEGDSALGSCKLGRDSEFQAIIPVRGKILNCLKAEYDKI 478

Query: 469 LSSQEIGTLITALGTGIGQDS--------FDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             +  I  +   LG G+   +        FD++ LR++KI+I TDADVDG  IRTL+LT 
Sbjct: 479 FKNDIIVDIFKVLGCGVEVTTKSNKEFSSFDLDGLRWNKIVICTDADVDGFQIRTLILTM 538

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            FR  P+LI  G +YI + PLY IT      +   E+     L     ++         G
Sbjct: 539 LFRLAPTLIERGRVYIAESPLYEITTKDKTYFAYTEQEKAHALAQIGDAKYTIQRSKGLG 598

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
               + +         ++   +           E + +  +   ++       +A   + 
Sbjct: 599 ENEPDMMW-----LTTMNPETRRLIRVTPSQAQETSDMFDLLLGDNLAGRKEFIAENGSR 653

Query: 641 RLNF 644
            L  
Sbjct: 654 YLEM 657



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 102/308 (33%), Gaps = 33/308 (10%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+Y              + ++++ +          +++      + 
Sbjct: 345 TSYENQTKKAITNKFIYEAMNDFLR--HQMEVYFLENPDEAARIAEQVLINKRSRENAER 402

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN--CESDQEINVSLAS 636
             +  K  L   +D + ++ K +     +  +  I                     ++  
Sbjct: 403 TRLNLKKKLAGTVDMSNRVQKFVDCRTKDVSRREIYIVEGDSALGSCKLGRDSEFQAIIP 462

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIF-------- 683
                LN +  + +K +   I      V     +   +  +E    +   +         
Sbjct: 463 VRGKILNCLKAEYDKIFKNDIIVDIFKVLGCGVEVTTKSNKEFSSFDLDGLRWNKIVICT 522

Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC----------------SLLDTIF 727
                  +I +  +   +    +LI  G       P                      + 
Sbjct: 523 DADVDGFQIRTLILTMLFRLAPTLIERGRVYIAESPLYEITTKDKTYFAYTEQEKAHALA 582

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
            IG    ++QR KGLGE     +W TT+NP+TR L+RV  + A +  D+F  L+GD +  
Sbjct: 583 QIGDAKYTIQRSKGLGENEPDMMWLTTMNPETRRLIRVTPSQAQETSDMFDLLLGDNLAG 642

Query: 788 RREFIQEN 795
           R+EFI EN
Sbjct: 643 RKEFIAEN 650


>gi|148971291|gb|ABR20183.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 221/423 (52%), Positives = 294/423 (69%), Gaps = 5/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVG SVVNALS   ++ +KR G  +  +   G   
Sbjct: 1   EVIMTVLHAGGKFDGGSYKVSGGLHGVGASVVNALSVRTRVEVKRNGFTWIQNCAKGHPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD--TLQHRLRELSFLNSSVQISLIDKR 214
             +   G     TGT+ TF P ++IF     +YD  TL +R REL+FLN+ + ISL D+R
Sbjct: 61  GAIEK-GEPTTKTGTKTTFKPDTEIFKDLSISYDFNTLANRFRELAFLNAGLYISLNDER 119

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           + + +E    Y  GI  FVSYL++ KK L    +  +G RD++ +++A +WND Y E++ 
Sbjct: 120 TGKKQE--FQYANGIAEFVSYLNQSKKALHTDVVYFRGERDDVEVEVAAQWNDSYSESIF 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTHL G R A+TR   +Y  +    K  K S+ G+D REG  +V+S+K+
Sbjct: 178 SYCNNINTIEGGTHLIGFRGAVTRTTNAYATEKNLLKDLKVSLEGEDIREGMAAVVSVKV 237

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL ++EV+ +VES VN+ ++ W + +P  AK I+ K ++A+  R+AAR+
Sbjct: 238 REPQFEGQTKTKLGNNEVKGIVESLVNEKMADWFDRNPGPAKQIIGKCVEAARAREAARK 297

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+LTRRK  LD  +LPGK+ADC ERDP   EL+LVEGDSAGGSAKQ R R  QA+LPL+
Sbjct: 298 ARELTRRKTALDGGTLPGKMADCQERDPALCELYLVEGDSAGGSAKQARDRRTQAVLPLK 357

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLS++EI  +I+ALGTGIG+D     K+RYHKIIIMTDADVDG+HIR
Sbjct: 358 GKILNVEKARFDKMLSNEEIRMMISALGTGIGKDQVSAEKIRYHKIIIMTDADVDGSHIR 417

Query: 515 TLL 517
           TLL
Sbjct: 418 TLL 420


>gi|110612653|gb|ABG78289.1| GyrB [uncultured bacterium]
          Length = 406

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 260/409 (63%), Positives = 322/409 (78%), Gaps = 3/409 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L L IKR G +YE  + +G+ D PL VTG A N 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEELHLLIKRHGKVYEQHYHHGVPDAPLAVTGEA-NA 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT+V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R+ +    T  Y+GG
Sbjct: 60  TGTQVWFKPSAQTFTNIEFHYDILAKRLRELSFLNSGVGILLFDERTNKQ--DTFRYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+R+K P++ S   + G +DNIS++LA++WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEHLNRNKTPIIPSVFSMSGEKDNISVELALQWNDSYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+GLRSALTR + +Y+E    +KK K +  GDD REG T+VLS+K+PDP+FS QTK+KLV
Sbjct: 178 LAGLRSALTRTLNNYIENEGHAKKAKVTTTGDDAREGLTAVLSVKVPDPKFSPQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+SVVES V + L+ +L E+P  AK IV K+++A+  R+AARRARD+ RRK  LDIA
Sbjct: 238 SSEVKSVVESLVAEKLNDYLLENPTVAKTIVGKIIEAARAREAARRARDMARRKSALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LSSQE+ TLITALG G G D +D +K+RYH+IIIMTDADVDG+HIRTLL
Sbjct: 358 LSSQEVATLITALGCGTGSDEYDPDKIRYHRIIIMTDADVDGSHIRTLL 406


>gi|33187275|gb|AAP97500.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 407

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/413 (50%), Positives = 285/413 (69%), Gaps = 6/413 (1%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +  
Sbjct: 1   LTVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEF 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +  
Sbjct: 61  GVIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK-- 117

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             +  ++GGI  FV   D +KK  +   I      +++++++A+ +ND Y EN+L F NN
Sbjct: 118 HESFHFEGGISQFVI--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNN 175

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F
Sbjct: 176 IKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQF 235

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LT
Sbjct: 236 EGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELT 295

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           R+K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILN
Sbjct: 296 RKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILN 355

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           VE+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 VEKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 407


>gi|2353018|gb|AAB92594.1| gyrase beta subunit [Shewanella gelidimarina]
          Length = 419

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 245/418 (58%), Positives = 319/418 (76%), Gaps = 4/418 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS ++L I+R+G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKVQLTIRRDGKLYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G +  +TGTE+ F PS+D F+   F+++ L  R+RELSFLNS V I LID+R  
Sbjct: 61  APVKEIGDST-NTGTELRFWPSTDTFTNVLFHFEILAKRVRELSFLNSGVGIRLIDERDD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +     + Y+GGI AFV YL+ +K P+ +        RD+ I++++AM+WNDG+ EN+ C
Sbjct: 120 KD--DCLKYEGGISAFVDYLNVNKTPVNKEVFHFIHERDDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRNLNNYMEKEGYNKKGKTNATGDDAREGLTAVISVKGP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVS+EV++ VE  + + L   L EHP EAK+IV K++DAS  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSNEVQTAVEQTMREHLPDSLVEHPNEAKLIVGKIIDASRAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LTRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGG  KQGR+R+NQAILPL+G
Sbjct: 298 RELTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGITKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           KILNV +ARFDKMLSS E+ TLITAL  GIG+D +D +K RYH I+IM DA+V+GA I
Sbjct: 358 KILNVGKARFDKMLSSPEVVTLITALRCGIGRDEYDPDKNRYHHIVIMNDAEVEGAPI 415


>gi|317057033|ref|YP_004105500.1| DNA topoisomerase [Ruminococcus albus 7]
 gi|315449302|gb|ADU22866.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 661

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 184/660 (27%), Positives = 311/660 (47%), Gaps = 25/660 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y  + I +LKG D V+ RP++  G  DG SG  H ++E++ N+IDE+ EG+
Sbjct: 1   MAEK--KQDYGNEDITLLKGKDRVRLRPAVMFGS-DGLSGCKHSVFEIISNSIDEAREGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
            D I VT   D S  V D GRG P D ++ E     E++   L+AGGK+N  S   Y+ +
Sbjct: 58  GDKIIVTKYFDDSIEVQDFGRGCPVDYNQREKRYNWELVYCELYAGGKYNNNSGDNYEYA 117

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+G+G       S ++ + + R+G  Y + F  G     L     +   TGT   + P
Sbjct: 118 LGLNGLGACATQYSSEYMDVEVIRDGFKYNLHFEKGDNVGGLKKEEYSSKKTGTRTRWKP 177

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYL 236
             D+F+      +  +  +++ + +N  V   L  +R     E    +Y+ GI  +V  +
Sbjct: 178 DLDVFTEISIEKEYFEDIMKKQAVVNPGVTFILRVQRENMSFEEITYYYENGIADYVKEI 237

Query: 237 DRHKKPLMQSPIRI------QGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHL 289
                               +  +    + L + +        +  F N+     GG+  
Sbjct: 238 AGEDTLTNVQHFSGDRKGRDRADKPEYKVKLGVAFVFSNKVQTLEYFHNSSFLSHGGSPD 297

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
             +RSA   QI +Y++ +    K+++ V   D  +    V S       +++QTK+ + +
Sbjct: 298 DAVRSAFVSQINAYLKSNNKYNKNEKPVTFQDVADCLVLVSSSFSTQTSYANQTKKAITN 357

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV--LDI 407
             ++  +  F+   L  +  E+P EA  I ++VL     R++A  +R   ++K    +D+
Sbjct: 358 KFIKECMTEFLKHNLEVYFIENPDEALKIAEQVLVNKRSRESAETSRLNIKKKLQGTIDL 417

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++   K  DC  +D  + EL++VEGDSA GS K  R  E QA++P+RGKILN  +A +DK
Sbjct: 418 SNQVQKFVDCRSKDLSRRELYIVEGDSALGSVKLARDAEFQAVIPVRGKILNCLKADYDK 477

Query: 468 MLSSQEIGTLITALGTGIGQDS--------FDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           +  ++ I  LI  LG G+  ++        F+++ LR++KI+I TDADVDG  IRTL+LT
Sbjct: 478 IFKNEIITDLIKVLGCGVEVNTGKKKDLSAFNLDNLRWNKIVICTDADVDGFQIRTLILT 537

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             +R  P+LI  G++YI + PL+ IT      +  DE   +  L                
Sbjct: 538 MLYRLTPTLIEKGYVYIAESPLFEITTKDKTYFAYDEPEKDKILKMIGDKSFTIQRSKGL 597

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           G  ++ D+ +      +  +LIK    + D T     ++ G       + I  + A  L 
Sbjct: 598 GE-NEADMMSLTTMNPETRRLIKVNPDDMDMTSWMFNMLLGDDLAGRKEFITNNGAEYLE 656



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 108/310 (34%), Gaps = 37/310 (11%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+               + ++++ +          +++      ++
Sbjct: 345 TSYANQTKKAITNKFIKECMTEFLK--HNLEVYFIENPDEALKIAEQVLVNKRSRESAET 402

Query: 579 KGVISKNDLRNFIDDALKIDKLI----KDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
             +  K  L+  ID + ++ K +    KD         +E     G      D E   ++
Sbjct: 403 SRLNIKKKLQGTIDLSNQVQKFVDCRSKDLSRREL-YIVEGDSALGSVKLARDAEF-QAV 460

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF- 693
                  LN +    +K +   I    I V      V      + S+      ++ +I  
Sbjct: 461 IPVRGKILNCLKADYDKIFKNEIITDLIKVLGCGVEVNTGKKKDLSAFNLDNLRWNKIVI 520

Query: 694 ------------SNRIEENYLTILSLICNGDKIKITGPCSLL---------------DTI 726
                       +  +   Y    +LI  G       P   +               D I
Sbjct: 521 CTDADVDGFQIRTLILTMLYRLTPTLIEKGYVYIAESPLFEITTKDKTYFAYDEPEKDKI 580

Query: 727 FS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
              IG K  ++QR KGLGE  A  +  TT+NP+TR L++V   D      +F+ L+GD++
Sbjct: 581 LKMIGDKSFTIQRSKGLGENEADMMSLTTMNPETRRLIKVNPDDMDMTSWMFNMLLGDDL 640

Query: 786 EPRREFIQEN 795
             R+EFI  N
Sbjct: 641 AGRKEFITNN 650


>gi|159894978|gb|ABX09835.1| DNA gyrase beta subunit [Vibrio sp. MWB21]
 gi|159894980|gb|ABX09836.1| DNA gyrase beta subunit [Vibrio sp. MWB28]
 gi|159894982|gb|ABX09837.1| DNA gyrase beta subunit [Vibrio sp. MWB29]
 gi|159894984|gb|ABX09838.1| DNA gyrase beta subunit [Vibrio sp. MWB30]
          Length = 404

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 240/406 (59%), Positives = 318/406 (78%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  T-DQTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVDHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|253826376|gb|ACT36491.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 221/408 (54%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI  +G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYAEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SE+R +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEIRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|10039323|dbj|BAB13322.1| DNA gyrase B subunit [Flexibacter canadensis]
          Length = 479

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 224/459 (48%), Positives = 309/459 (67%), Gaps = 10/459 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ LK  + REG ++   +  G     +   G   N T
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTHLKAEVHREGKVWVQEYERGKPQYDVKTVGET-NIT 59

Query: 170 GTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF P ++IF+    +NYDTL  RLREL++LN  ++++L D+R           + F
Sbjct: 60  GTIVTFTPDTEIFTLTTIYNYDTLAARLRELAYLNKGIRLTLTDERETNDDGSYVVNSYF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            +GG++ F++YLD +++PL+  PI I G++  I ++LA+++N  Y ENV  + NNI   +
Sbjct: 120 SEGGLKEFITYLDGNREPLIPEPIYIDGNKSGIPVELALQYNSTYSENVHSYVNNINTIE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++G R  LTR + SY EKS   K  K  + GDD REG T+V+S+K+ +P+F  QTK
Sbjct: 180 GGTHVAGFRRGLTRTLKSYAEKSGLLKNLKVEITGDDFREGLTAVVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++EV   V+  V + L  +LEEHP EA++IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNNEVIGAVDQAVGEILGVYLEEHPKEARLIVQKVVLAATARAAARKAREMVQRKSV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  + LPGKL+DCS  DP+  EL+LVEGDSAGG+AKQGR R  QAILPL+GKILNVE+A 
Sbjct: 300 MSGSGLPGKLSDCSNNDPEACELYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TA+G  IG    D      KLRYHKIIIMTDADVDG+HI TL+LTF
Sbjct: 360 EHKIYENEEIKNIFTAMGVSIGTPEDDKALNLEKLRYHKIIIMTDADVDGSHITTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           FFR M +L+  G++YI  PPLY + +GK  +Y   EE  
Sbjct: 420 FFRYMKALVEQGYIYIATPPLYLVKKGKDFEYAWTEEQR 458


>gi|34850099|emb|CAE46921.1| DNA gyrase subunit B [Vibrio sp. Mel 35]
 gi|34850103|emb|CAE46923.1| DNA gyrase subunit B [Vibrio crassostreae]
          Length = 404

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 245/406 (60%), Positives = 315/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH I+IMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIVIMTDADVD 404


>gi|253826378|gb|ACT36492.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 221/408 (54%), Positives = 300/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +F+ +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFIEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|159894998|gb|ABX09845.1| DNA gyrase beta subunit [Vibrio campbellii]
          Length = 403

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 242/405 (59%), Positives = 316/405 (78%), Gaps = 3/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  TE-KTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|33186737|emb|CAE12282.1| gyrase B subunit [Vibrio kanaloae]
 gi|33186745|emb|CAE12286.1| gyrase B subunit [Vibrio splendidus]
          Length = 404

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 250/406 (61%), Positives = 317/406 (78%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|253826370|gb|ACT36488.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 222/408 (54%), Positives = 298/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTRVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLRENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|199599919|gb|ACH91037.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 222/408 (54%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEDYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQESPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|42541295|gb|AAS19527.1| DNA gyrase subunit B [Photobacterium damselae]
          Length = 403

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 241/404 (59%), Positives = 311/404 (76%), Gaps = 3/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+I+   + +G+   PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT + F PSS+ F+   F Y+ L  RLRELSFLNS V I L D+R  E ++    
Sbjct: 61  T-DRTGTTIRFWPSSETFTNTTFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKQDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNRNKTPIHQKVFHFNVEREDGITVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + +Y+EK   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + L  +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH III TDAD
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHSIIISTDAD 402


>gi|310780905|gb|ADP23928.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 376

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 187/379 (49%), Positives = 258/379 (68%), Gaps = 3/379 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCSE 419
           RK  L+  +LPGKLADCSE
Sbjct: 358 RKSALENTTLPGKLADCSE 376


>gi|6939871|dbj|BAA90675.1| DNA gyrase subunit B [Bergeyella zoohelcum]
          Length = 477

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 219/469 (46%), Positives = 302/469 (64%), Gaps = 10/469 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ +  R+ R+G IY+  +  G     + V G   +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTDMTTRVYRDGKIYQQKYQRGKAVTEVEVVGET-DKR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFY 225
           GTE  F P   IF+  ++ YD L  RLREL+FLN  + I+L D+R        +  T + 
Sbjct: 60  GTEQFFQPDDTIFNELEYKYDKLSTRLRELAFLNKGITITLTDEREKNEDGSYKSETFYS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQ-GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           K G+  FV Y+D  K+P+M++PI I+    D I +++A+R+N+  H N+  + NNI  +D
Sbjct: 120 KEGLNEFVKYIDNAKEPIMENPIHIESKEGDEIPVEVALRYNNSVHSNIYSYVNNINTRD 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R ALT     Y E+    K     + G+D  EG TSV+S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRALTSTFKKYAEEVVTGKDKDVKIEGEDFLEGLTSVVSVKVMEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEV   V   V++ L  +LEE+P+EAK+IV+KV+ A+  R AA++AR+  +RK  
Sbjct: 240 TKLGNSEVSGAVSRVVSEALKNFLEENPIEAKLIVQKVILAAKARLAAQKARENIQRKTP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  A LPGKLADCS +DP  SE+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++ 
Sbjct: 300 MGGAGLPGKLADCSSKDPSISEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  +G +        +KLRYHK++IMTDAD+DG+HI TL+LTF
Sbjct: 360 IHKVYENEEIKNIYTALGVSVGTEEDSKALNLSKLRYHKVVIMTDADIDGSHISTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FFR M  LI  G++YI  PPLY + +G    Y  +E+  E+  +  S  
Sbjct: 420 FFRYMKELIEQGYVYIASPPLYLLKKGNKKVYAWNEKEREEKTLEMSTD 468


>gi|2196804|gb|AAB80819.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 251/422 (59%), Positives = 323/422 (76%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF   SY VSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFEDNSYNVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS + FS  +F+++ L  R+RELSFLNS V I LID+R  
Sbjct: 61  APIREIGDAT-KTGTEIRFWPSENTFSNIEFHFEILAKRVRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--ELFKYEGGISAFVDYLNRNKTPINKDVSHFIQERDDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ ++ E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYVLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML SQE+ TLITALG GIG+D ++ +K RY  II+MTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYQNIIMMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|13517045|dbj|BAB40405.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04474]
          Length = 474

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 217/463 (46%), Positives = 300/463 (64%), Gaps = 10/463 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G A + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHREGKIWEQEYERGKTMYPVKSVG-ASDMT 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF P   IF+    ++YDTL +R+REL++LN  V ISL DKR+     E    T F
Sbjct: 60  GTVVTFHPDKTIFTQTTEYSYDTLANRMRELAYLNKGVTISLTDKRNKDEKGEFVGETFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ F+++LD  + PL+Q+ I ++G ++ I +++AM +N G+ EN+  + NNI   +
Sbjct: 120 SEQGLKEFITFLDETRVPLIQNVISMEGEKNGIPVEVAMIYNTGFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEEHP +AK IV+KV  A+  R AA +AR++ +R+  
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTNYLEEHPEDAKQIVEKVKLAAQARHAAAKAREMVQRQNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +    LPGKL+DC+++ P+  ELFLVEGDSAGG+AK G  R  QAILPLRGKILNVE+A 
Sbjct: 300 MGGGGLPGKLSDCADQTPENCELFLVEGDSAGGTAKMGDDRNFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFR M  LI  G +YI  PPLY + +G   +Y  D+   +  +
Sbjct: 420 FFRYMRELIEGGHVYIATPPLYLVKKGSKKRYAWDDGERDAII 462


>gi|110612635|gb|ABG78280.1| GyrB [uncultured bacterium]
          Length = 406

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 252/409 (61%), Positives = 317/409 (77%), Gaps = 3/409 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVG+SVVNALS+ L L I+R G++YE  + +G+   PL +TG+   D
Sbjct: 1   FDDNSYKVSGGLHGVGISVVNALSAELHLAIRRNGHLYEQDYRDGVPLAPLAITGNV-QD 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGTEV F PS   F+   F+YD L  RLRELSFLNS V+I L D+R+ +    T  Y GG
Sbjct: 60  TGTEVWFKPSPATFTNIVFHYDVLAKRLRELSFLNSGVRIHLFDERTEKQ--DTFEYVGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+R+K P++     + G RDNI ++L+++WND + ENV CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEHLNRNKTPIIPMVFSVNGVRDNIGVELSIQWNDSFQENVFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ LTR + +Y+EK   +KK K    GDD REG T+VLS+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAGLTRTLNNYIEKEGLAKKAKIVTTGDDIREGLTAVLSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES V +  + +L E+P  AK IV K+ DA+  RDAARRAR++ RRKG LDIA
Sbjct: 238 SSEVKSAVESLVAEKFNDFLLENPSAAKTIVGKIFDAARARDAARRAREMVRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LSSQE+ TLITALG GIG + +D +K+RYH+IIIMTDADVDG+HIRTLL
Sbjct: 358 LSSQEVATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLL 406


>gi|33145988|emb|CAD57628.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 404

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 247/406 (60%), Positives = 314/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + FS   F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVDHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VE  + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|213391524|gb|ACJ46503.1| gyrase B subunit [Shewanella sp. BSw20248]
          Length = 419

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 242/408 (59%), Positives = 317/408 (77%), Gaps = 4/408 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  + +G+ D P+   G
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRAGKVYEQFYTHGVPDAPIKEIG 67

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            A   TGTE+ F PS D F+  +F+++ L  R+RELSFLNS V I L+D+R  +      
Sbjct: 68  DA-VKTGTELRFWPSGDTFTNVEFHFEILAKRVRELSFLNSGVGIRLVDERDGKD--EFF 124

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ CFTNNIPQ
Sbjct: 125 KYEGGISAFVDYLNRNKTPINKDVFHFSHEREDGITVEVAMQWNDGYQENIFCFTNNIPQ 184

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + +Y+E+   +KK K +  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 185 RDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQ 244

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRK
Sbjct: 245 TKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRK 304

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+  LPG+LADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 305 GALDLGGLPGELADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 364

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG
Sbjct: 365 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDG 412


>gi|310780945|gb|ADP23948.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 375

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 186/378 (49%), Positives = 257/378 (67%), Gaps = 3/378 (0%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHH++YEV+DN+IDE+L GY   I VT++ D S TV D+GRGIPTD+H + G  A EV +
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVAL 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN  +YKVSGGLHGVGVSVVNALS  L++ +K+   IY   +  G+    L 
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G       T +TF P  +IF    F+YD L  RLREL+FLN  + I LID+R  +   
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETVFDYDVLAQRLRELAFLNKGINIKLIDERDGKE-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV YL+R+K+ L   PI ++       +++ M++ND Y+EN+  F NNI
Sbjct: 178 EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAKNTEYEVEVCMQYNDSYNENIFSFANNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
             ++GGTHL G ++ALT+ I  Y  K    K +++++ G+D REG T+++S+K+ +P+F 
Sbjct: 238 DTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFE 297

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE+RS+VE+ V D L+A+LEE+P  AKIIV+K   A+  R+AAR+AR+LTR
Sbjct: 298 GQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTR 357

Query: 401 RKGVLDIASLPGKLADCS 418
           RK  L+  +LPGKLADCS
Sbjct: 358 RKSALENTTLPGKLADCS 375


>gi|58761293|gb|AAW82361.1| DNA gyrase subunit B [Dehalococcoides sp. TM-EtOH]
          Length = 395

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 190/398 (47%), Positives = 266/398 (66%), Gaps = 3/398 (0%)

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           ++DE++ G  D I V +  DGS +V DNGRGIP D+H    ISA E +MT LHAG KF  
Sbjct: 1   SVDEAMAGVCDRIKVIIYKDGSVSVEDNGRGIPIDIHPVTKISALETVMTVLHAGAKFGG 60

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           K+Y+VSGGLHGVG SVVNAL+ W  ++++R G IY+ S+  G    PL   G   + +GT
Sbjct: 61  KTYQVSGGLHGVGASVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEVG-VSDGSGT 119

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
              F   S IFS  +++++TL  RLRE+++LN  +++ + D++S + R      +GGI  
Sbjct: 120 TTIFKADSQIFSTTEYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERTYYF--EGGITG 177

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+R+++   + PI I    D+  +++A+++NDGY ++ L F N +   DGGTHL+G
Sbjct: 178 FVRHLNRNREVRHRQPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTIDGGTHLTG 237

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR    Y  KS   K    +++GDD REG  +++S+K+P+P+F  QTK KL + E
Sbjct: 238 FRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIE 297

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           ++S VES V + LS +LEEHP + K I++K + A+  R+AAR+ARDL  RK  LD  +LP
Sbjct: 298 IKSFVESAVTEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLP 357

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           GKLADCSERD    ELFLVEGDSAGGSAKQGR+R  QA
Sbjct: 358 GKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQA 395


>gi|19909649|dbj|BAB87020.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
          Length = 393

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/397 (44%), Positives = 241/397 (60%), Gaps = 11/397 (2%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G+ GLHH++YEV+DN++DESL GY D I VTL+ DGS  V DNGRGIP D+H EEG SA 
Sbjct: 1   GKRGLHHLVYEVVDNSVDESLAGYCDWIKVTLHEDGSVEVEDNGRGIPVDVHPEEGRSAL 60

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EV+ T LHAGGKF++ SYK+SGGLHGVGVSVVNALS WL++R+ R+G IY   +  G   
Sbjct: 61  EVVFTVLHAGGKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVYRDGKIYRQRYERGKPV 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             + V G   +  GT V F P   IFS  +F+ D L+HRLRE++FL   ++I   D+ + 
Sbjct: 121 TLVEVIGET-DKHGTVVRFKPDPLIFSETEFDPDILEHRLREIAFLVPGLKIEFEDRINN 179

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGY 269
           E    T  + GG++ FV YL+R KK L       +  +  +        +++A ++ D Y
Sbjct: 180 EK--KTFKFDGGLKEFVKYLNRGKKVLHDVIYLKRTEKVKVKDKEDEVIVEIAFQYTDSY 237

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E +L F N I   DGGTH++  ++ LTR +  Y  K    K    S  GDD REG T+V
Sbjct: 238 SEEILSFANTIKTVDGGTHVTAFKTTLTRLMNEYGRKHNFLKNGD-SFQGDDVREGLTAV 296

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+ + +P F  QTK KL + EV+  V   + + L    +  P   + I+ K++     R
Sbjct: 297 ISVYVKNPEFEGQTKSKLGNEEVKEAVNRAMREELKKIFDASPDLVRTILSKIMSTKQAR 356

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +AARRAR++ RRK VL   + PGKLADCS  D + +E
Sbjct: 357 EAARRAREMVRRKNVLQSTTHPGKLADCSSTDRENTE 393


>gi|28866790|dbj|BAC65173.1| DNA gyrase B subunit [Cellulophaga fucicola]
          Length = 470

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 215/464 (46%), Positives = 298/464 (64%), Gaps = 12/464 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K Y+VSGGLHGVGVS VNALS  LK  + R G IYE  +  G    P+   G      G
Sbjct: 1   DKIYRVSGGLHGVGVSCVNALSKDLKATVFRNGTIYEQEYQKGKALYPVKSIGETEI-RG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TM 223
           TEVTF P   IF+    FNY+TL +R+RELS+LN  V I+L DKR  +            
Sbjct: 60  TEVTFYPDDTIFTQTTEFNYETLANRMRELSYLNKGVAITLTDKRQEDKESESGFVGERF 119

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           +   G++ F+ +LD +++ L+Q+ I ++G ++ I +++AM +N  Y EN+  + NNI   
Sbjct: 120 YSDEGLKEFIKFLDGNREQLIQNVISMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTH 179

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           +GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QT
Sbjct: 180 EGGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQT 239

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL + EV + V   V++ L+ +LEE+P +AK+IV+KV+ A+  R AA +AR++ +RK 
Sbjct: 240 KTKLGNREVSAAVSQSVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKT 299

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           V+ I  LPGKL+DCS++DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A
Sbjct: 300 VMSIGGLPGKLSDCSDQDPVNCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKA 359

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLT 519
              K+  ++EI  + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LT
Sbjct: 360 MQHKVFENEEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILT 419

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFFR M  LI  G +YI  PPLY + +G   +Y   ++  ++  
Sbjct: 420 FFFRYMKELIEAGHIYIATPPLYLVKKGTKKRYAWSDKERDEIA 463


>gi|262274994|ref|ZP_06052805.1| topoisomerase IV subunit B [Grimontia hollisae CIP 101886]
 gi|262221557|gb|EEY72871.1| topoisomerase IV subunit B [Grimontia hollisae CIP 101886]
          Length = 576

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 203/526 (38%), Positives = 290/526 (55%), Gaps = 10/526 (1%)

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L+ D S  V D+GRG+P D+H EEG+S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 2   EVILHADQSLEVIDDGRGMPVDIHPEEGVSGVELILCKLHAGGKFSNKNYQFSGGLHGVG 61

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFS 183
           +SVVNALS  +++ +KR+G +Y+++F +G     L VTG+ G    GT V F P S  F 
Sbjct: 62  ISVVNALSKRVEVSVKRDGQVYDIAFEHGEKVQELTVTGTCGRRAKGTRVHFWPDSSYFD 121

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+   L++ L+  + L   ++I   DK + E        + G++ +++   R  + L
Sbjct: 122 SPKFSVSRLKNILKAKAVLCPGLEIVFTDKNTDETITWCY--ESGLKEYLAEGVRGYELL 179

Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P   + S  N + D A +   +G       + N IP   GGTH++GLR  L   +  
Sbjct: 180 PEEPFVGEFSASNEAADWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMRE 239

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  +    VLS+KM DP+F+ QTKE+L S +  + V   V D
Sbjct: 240 FCEFRNLLPRG-VKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 298

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DC+ +D 
Sbjct: 299 SFSLWLNERPQLAEQLAEVCIANAH---RRMRAAKKVVRKKVASGPALPGKLTDCAMQDL 355

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELFLVEGDSAGGSAKQ R RE QAI+PLRGKILN      D++L+SQE+  +  ++ 
Sbjct: 356 SRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSADQVLASQEVHDI--SVA 413

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GI  DS D++ LRY KI I+ DAD DG HI TLL   F +   +L+  G +Y+  PPLY
Sbjct: 414 LGIDPDSDDLSGLRYGKICILADADSDGLHIATLLCALFVKHFRALVKAGHVYVAMPPLY 473

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            I  GK + Y  D+E     L   S           KG+   N L+
Sbjct: 474 RIDCGKEVYYALDDEEKAGILERLSQKRAKIDVQRFKGLGEMNPLQ 519



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 100/283 (35%), Gaps = 44/283 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ +   L + L    ++        +K V+ K             D  ++D
Sbjct: 295 VVKDSFSLWLNERPQLAEQLAEVCIANAHRRMRAAKKVVRKKVASGPALPGKLTDCAMQD 354

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 355 LSR--TELFLVEGDSAGGSAKQARDREFQAIMPLRGKILN----------TWEVSADQVL 402

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S    G +Y +I             +  +   ++     +   
Sbjct: 403 ASQEVHDISVALGIDPDSDDLSGLRYGKICILADADSDGLHIATLLCALFVKHFRALVKA 462

Query: 712 DKIKITGP--------CSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQLWE 752
             + +  P          +   +    + GI            +QR+KGLGEMN  QL E
Sbjct: 463 GHVYVAMPPLYRIDCGKEVYYALDDEEKAGILERLSQKRAKIDVQRFKGLGEMNPLQLRE 522

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQE 794
           TT++P+TR L+++ I D  + D +   L+G +  E RR ++Q+
Sbjct: 523 TTMDPNTRRLVQLTIDDQEETDRMMDMLLGKKRAEDRRHWLQD 565


>gi|253826366|gb|ACT36486.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 220/408 (53%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            + GTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEDGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LT+RK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTQRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|28866792|dbj|BAC65174.1| DNA gyrase B subunit [Cellulophaga baltica]
          Length = 475

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 216/464 (46%), Positives = 301/464 (64%), Gaps = 12/464 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K Y+VSGGLHGVGVS VNALS+ LK  + R G IYE  +  G    P+   G      G
Sbjct: 1   DKFYRVSGGLHGVGVSCVNALSTHLKATVFRNGTIYEQEYEKGKALYPVKSIGETEI-RG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR------EITM 223
           TEVTF P   IF+    F+Y+TL +R+RELS+LN  V I++ DKR  +        E   
Sbjct: 60  TEVTFYPDETIFTQTTEFSYETLSNRMRELSYLNKGVAITMTDKRQKDKDSPSGFLEERF 119

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           F + G++ F+ +LD +++PL+   I ++G ++ I +++AM +N  Y EN+  + NNI   
Sbjct: 120 FSEEGLKEFIKFLDGNREPLINGVISMEGEKNGIPVEVAMVYNTSYTENLHSYVNNINTH 179

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           +GGTHLSG R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QT
Sbjct: 180 EGGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIISVKVGEPQFEGQT 239

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL + EV + V   V++ LS +LEE+P +AK+IV+KV+ A+  R AA +AR++ +RK 
Sbjct: 240 KTKLGNREVSAAVSQAVSEMLSDYLEENPDDAKVIVQKVVLAATARHAATKAREMVQRKT 299

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           V+ I  LPGKL+DCS++DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A
Sbjct: 300 VMSIGGLPGKLSDCSDQDPVNCEVFLVEGDSAGGTAKQGRDRMFQAILPLRGKILNVEKA 359

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLT 519
              K+  ++EI  + TALG  IG +        +KLRYHK++IM DADVDG+HI TL+LT
Sbjct: 360 MTHKVFENEEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILT 419

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           FFFR M  LI  G +YI  PPLY + +G   +Y  +++  ++  
Sbjct: 420 FFFRYMRELIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIA 463


>gi|253826384|gb|ACT36495.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 222/408 (54%), Positives = 300/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  GSEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|285013338|gb|ADC32657.1| DNA gyrase subunit B [Pantoea ananatis]
          Length = 405

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 245/408 (60%), Positives = 317/408 (77%), Gaps = 4/408 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGV VVNALS  L+L I+REG +++  +++G+ + PL VTG
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVPVVNALSQKLELTIRREGKVHQQIYLHGVPEAPLAVTG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              + TGT + F PS D F+   DF YD L  RLRELSFLNS V I L  +   + R   
Sbjct: 61  DT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELSFLNSGVSIRL--EDKRDARNDH 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ
Sbjct: 118 FHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQ 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 178 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRK
Sbjct: 238 TKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVGKIIDAARAREAARRAREMTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC ERDP  SE++LVEGDSAGGSAKQGR+R+NQAILPL+GKIL+VE+
Sbjct: 298 GALDLAGLPGKLADCQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILSVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           ARFDKML+SQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG
Sbjct: 358 ARFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG 405


>gi|33186733|emb|CAE12280.1| gyrase B subunit [Vibrio crassostreae]
 gi|34850107|emb|CAE46925.1| DNA gyrase subunit B [Vibrio crassostreae]
          Length = 404

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 245/406 (60%), Positives = 314/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|33187277|gb|AAP97501.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/412 (50%), Positives = 285/412 (69%), Gaps = 6/412 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 406


>gi|33187279|gb|AAP97502.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187281|gb|AAP97503.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187293|gb|AAP97509.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187297|gb|AAP97511.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187303|gb|AAP97514.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187309|gb|AAP97517.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187329|gb|AAP97527.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 406

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/412 (50%), Positives = 285/412 (69%), Gaps = 6/412 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +++S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 406


>gi|220928823|ref|YP_002505732.1| DNA gyrase subunit B domain protein [Clostridium cellulolyticum
           H10]
 gi|219999151|gb|ACL75752.1| DNA gyrase subunit B domain protein [Clostridium cellulolyticum
           H10]
          Length = 660

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/667 (25%), Positives = 305/667 (45%), Gaps = 32/667 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   + + Y  +SI  LKG D V+ RP +  G  DG  G  H  +E+L N+IDE+ EG+
Sbjct: 1   MTKKDRKNEYGNESISSLKGADRVRLRPGVIFGS-DGLDGCEHSFFEILSNSIDEAREGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
            +II +T   D S  V D GRG+P D + +E     E++   L+AGGK+   S   Y+ S
Sbjct: 60  GNIIEITRFADNSIMVQDWGRGLPVDYNSKEERFNWELVYCELYAGGKYQNNSGENYEYS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+G+G       S +  + + R+G  Y++ F  G     L       + T T   + P
Sbjct: 120 LGLNGLGACATQYSSEYFDVTVFRDGYRYDLHFEKGENIGGLKKEKCKYDRTSTIQKWRP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             D+F+  D   +  Q  L++ + +N+ ++  L D+ S E        + GI  ++  + 
Sbjct: 180 DIDVFTDIDIPLEYYQTVLKKQAVVNAGLKFILKDEESGETYIYMY--ENGIVDYIKEIT 237

Query: 238 RHKKPLMQSPIRIQG--------SRDNISIDLAMR-WNDGYHENVLCFTNNIPQKDGGTH 288
           +            +G         +    + + +    + +   +  + N+   + GG  
Sbjct: 238 K--DTGFTEVQFYEGSARGRDRADKPEYKVKMQIAFCFNNHTNLLEYYHNSSFLEYGGAP 295

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
              +++A+  +I   ++      KD+  +   D  +    V++       + +QTK+ + 
Sbjct: 296 DKAVKNAMIYEIDKSIKARGKYNKDESKITFADIEDSLILVVNSFSTITSYENQTKKSIT 355

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLD 406
           +  ++  +  F+   L  +  E+ +E+  I++++L     R+ A + R   ++K  G LD
Sbjct: 356 NKFIQETMTDFLKQQLEIYFIENKIESDKIIEQILVNKRSRETAEKTRINIKKKLSGNLD 415

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I++   K  DC  +D  + E+++VEGDSA G+ K GR  E QAI+P+RGKILN  +A++D
Sbjct: 416 ISNRVKKFVDCRTKDISRREIYIVEGDSALGACKLGRDAEFQAIMPVRGKILNCLKAQYD 475

Query: 467 KMLSSQEIGTLITALGTGIGQ--------DSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
            +  ++ I  L+  LG G+          ++FD+  LR+ K+II TDADVDG  IRTL+L
Sbjct: 476 NIFKNEIIIDLLKVLGCGVEIKSKHNKDLNTFDLANLRWDKVIICTDADVDGFQIRTLIL 535

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T  +R +P+L+  G ++I + PL+ IT      +   E+   + L      +        
Sbjct: 536 TMLYRLVPTLLSVGKVFIAESPLFEITCKNKSYFAYTEKEKAEILAKLEGKKYTIQRSKG 595

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            G      +         ++   +           +  ++  V   ++       +    
Sbjct: 596 LGENEPEMMWET-----TMNPATRRLIKVMPSDVEKTTMMFDVLLGDNLAGRKQFIEDNG 650

Query: 639 ANRLNFI 645
              L+ I
Sbjct: 651 NKYLDMI 657



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 112/314 (35%), Gaps = 39/314 (12%)

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
             +T +  Q    I N F+           +   + +++++   +  +    +++     
Sbjct: 341 STITSYENQTKKSITNKFIQETMTDFLK--QQLEIYFIENKIESDKIIEQILVNKRSRET 398

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVS 633
            +   +  K  L   +D + ++ K +     +  +  I                     +
Sbjct: 399 AEKTRINIKKKLSGNLDISNRVKKFVDCRTKDISRREIYIVEGDSALGACKLGRDAEFQA 458

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIF----- 683
           +       LN +  + +  +   I    + V     +  ++  ++    + +++      
Sbjct: 459 IMPVRGKILNCLKAQYDNIFKNEIIIDLLKVLGCGVEIKSKHNKDLNTFDLANLRWDKVI 518

Query: 684 ---SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP-------------------CS 721
                     +I +  +   Y  + +L+  G       P                     
Sbjct: 519 ICTDADVDGFQIRTLILTMLYRLVPTLLSVGKVFIAESPLFEITCKNKSYFAYTEKEKAE 578

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L  +   G+K  ++QR KGLGE     +WETT+NP TR L++V  +D  +   +F  L+
Sbjct: 579 ILAKL--EGKK-YTIQRSKGLGENEPEMMWETTMNPATRRLIKVMPSDVEKTTMMFDVLL 635

Query: 782 GDEVEPRREFIQEN 795
           GD +  R++FI++N
Sbjct: 636 GDNLAGRKQFIEDN 649


>gi|33187301|gb|AAP97513.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 206/412 (50%), Positives = 285/412 (69%), Gaps = 6/412 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +++S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAIVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 406


>gi|159894996|gb|ABX09844.1| DNA gyrase beta subunit [Vibrio harveyi]
          Length = 403

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 239/405 (59%), Positives = 317/405 (78%), Gaps = 3/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  T-DQTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|295979567|dbj|BAJ07456.1| DNA gyrase subunit B [Prosthecomicrobium pneumaticum]
          Length = 306

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 204/306 (66%), Positives = 250/306 (81%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+AD ++VTLN DGSCTV DNGRGIPTD+H  EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADEVSVTLNPDGSCTVKDNGRGIPTDIHPGEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS+WLKL++ R+G ++EM F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSAWLKLKVWRKGKVHEMRFTHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
             D PL +TG      GTEVTFLPS++ FS  +F+Y TL+HRLREL+FLNS V+I L DK
Sbjct: 121 EPDAPLAITGDWDGRNGTEVTFLPSTETFSKTEFDYATLEHRLRELAFLNSGVRIVLTDK 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  EP+   + Y+GG+EAFV YLDR KKPL+  PI I+  RD I++++AM WND YHENV
Sbjct: 181 RGVEPKREELMYEGGLEAFVRYLDRTKKPLVPDPITIRAERDGIAVEVAMWWNDTYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+T+Y E    SKK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVTAYAEAGGVSKKEKVALTGDDCREGLTAVLSVK 300

Query: 334 MPDPRF 339
           +PDP+F
Sbjct: 301 VPDPKF 306


>gi|34850105|emb|CAE46924.1| DNA gyrase subunit B [Vibrio crassostreae]
          Length = 403

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 246/405 (60%), Positives = 315/405 (77%), Gaps = 3/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLTVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           A + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  A-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|33187299|gb|AAP97512.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/412 (50%), Positives = 284/412 (68%), Gaps = 6/412 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV   D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVI--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +++S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 406


>gi|33187307|gb|AAP97516.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187311|gb|AAP97518.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/412 (50%), Positives = 284/412 (68%), Gaps = 6/412 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV   D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVI--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 406


>gi|2196844|gb|AAB80839.1| DNA gyrase beta-subunit [Shewanella sp. MR-7]
          Length = 419

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 249/422 (59%), Positives = 326/422 (77%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L   GKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E  + +G+ D
Sbjct: 1   EVIMTVLQPVGKFDHNSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+ V G A   TGTE+ F PS + FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  EPIKVIGDAT-KTGTEIRFWPSEETFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY E++ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQESIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML SQE+ TLITALG GIG+D ++ +K RYHKIIIMTDA VDG+HI T
Sbjct: 358 KILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYHKIIIMTDAYVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|325678933|ref|ZP_08158531.1| DNA gyrase, B subunit, C-terminal domain protein [Ruminococcus
           albus 8]
 gi|324109437|gb|EGC03655.1| DNA gyrase, B subunit, C-terminal domain protein [Ruminococcus
           albus 8]
          Length = 661

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/601 (29%), Positives = 293/601 (48%), Gaps = 28/601 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y  D I +LKG D V+KRP++  G  DG  G  H ++E+L N+IDE+ EG+
Sbjct: 1   MANK--KQDYANDDITMLKGADRVRKRPAVIFGS-DGIDGCQHSVFEILSNSIDEAREGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
            D I VT   D S  V D GRG P D ++ E     E++   L+AGGKF+  S   Y  +
Sbjct: 58  GDKIIVTKYDDNSIEVQDFGRGCPVDYNQREKRYNWELVYCELYAGGKFDNNSGENYSFA 117

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+G+G       S ++ + + R+G  Y++ F  G     L    +    TGT   + P
Sbjct: 118 LGLNGLGACATQYSSEYMDVEVFRDGYKYDLHFEKGENKGGLKKEETKQKKTGTRTHWKP 177

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYL 236
             D+F+  + +    +  +++ + +N  V   L  +R+    E    FY+ GI  +V  +
Sbjct: 178 DLDVFTDINIDKSFFEDVMKKQAVVNPGVTFLLRVQRNDGTFEEQTFFYENGIADYVKEI 237

Query: 237 DRHKKPLMQSPIRIQG--------SRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGT 287
                          G         +D   + L + +        +  F N+     GG+
Sbjct: 238 AGEDTLTN--VQYFTGDRRGRDRADKDEYKVKLGVSFVFSNKVQTLEYFHNSSFLSHGGS 295

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
               +RSA T QI +Y++ +    K+++ +   D  +    V S       +++QTK+ +
Sbjct: 296 PDDAVRSAFTSQINAYLKNNNKYNKNEKPINFQDVADCLVLVSSSFSTQTSYANQTKKAI 355

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV--L 405
            +  ++  +  F+   L  +  E+P EA  I ++VL     R++A  +R   ++K    +
Sbjct: 356 TNKFIKECMTEFLKHNLEVYFIENPDEALKIAEQVLVNKRSRESAETSRLNIKKKLQGTI 415

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D+++   K  DC  +D  + EL++VEGDSA GS K  R  E QA++P+RGKILN  +A +
Sbjct: 416 DLSNQVQKFVDCRSKDLSRRELYIVEGDSALGSVKLARDAEFQAVIPVRGKILNCLKADY 475

Query: 466 DKMLSSQEIGTLITALGTGIGQDS--------FDINKLRYHKIIIMTDADVDGAHIRTLL 517
           DK+  ++ I  LI  LG G+  ++        F+++ LR++K++I TDADVDG  IRTL+
Sbjct: 476 DKIFKNEIITDLIKVLGCGVEVNTGKKKDLSAFNLDNLRWNKVVICTDADVDGFQIRTLI 535

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           LT  +R  P+LI  G++YI + PL+ IT      +  DE   +  L              
Sbjct: 536 LTMLYRLTPTLIEKGYVYIAESPLFEITTKDKTYFAYDEPEKDKILKMIGDKSFTIQRSK 595

Query: 578 S 578
            
Sbjct: 596 G 596



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 108/310 (34%), Gaps = 37/310 (11%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+               + ++++ +          +++      ++
Sbjct: 345 TSYANQTKKAITNKFIKECMTEFLK--HNLEVYFIENPDEALKIAEQVLVNKRSRESAET 402

Query: 579 KGVISKNDLRNFIDDALKIDKLI----KDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
             +  K  L+  ID + ++ K +    KD         +E     G      D E   ++
Sbjct: 403 SRLNIKKKLQGTIDLSNQVQKFVDCRSKDLSRREL-YIVEGDSALGSVKLARDAEF-QAV 460

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR--- 691
                  LN +    +K +   I    I V      V      + S+      ++ +   
Sbjct: 461 IPVRGKILNCLKADYDKIFKNEIITDLIKVLGCGVEVNTGKKKDLSAFNLDNLRWNKVVI 520

Query: 692 ----------IFSNRIEENYLTILSLICNGDKIKITGPCSLL---------------DTI 726
                     I +  +   Y    +LI  G       P   +               D I
Sbjct: 521 CTDADVDGFQIRTLILTMLYRLTPTLIEKGYVYIAESPLFEITTKDKTYFAYDEPEKDKI 580

Query: 727 FS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785
              IG K  ++QR KGLGE  A  +  TT+NP+TR L++V   D      +F+ L+GD++
Sbjct: 581 LKMIGDKSFTIQRSKGLGENEADMMSLTTMNPETRRLIKVNPDDVEMTQWMFNMLLGDDL 640

Query: 786 EPRREFIQEN 795
             R+EFI  N
Sbjct: 641 AGRKEFITNN 650


>gi|86651947|gb|ABD14456.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 402

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 241/404 (59%), Positives = 315/404 (77%), Gaps = 3/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     
Sbjct: 61  T-DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMT AD
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTYAD 402


>gi|159894988|gb|ABX09840.1| DNA gyrase beta subunit [Vibrio sp. fram1]
          Length = 403

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 239/405 (59%), Positives = 317/405 (78%), Gaps = 3/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  T-DQTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVDHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|294960273|gb|ADF49629.1| DNA gyrase subunit B [Shewanella sp. S7-3]
          Length = 405

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 242/408 (59%), Positives = 318/408 (77%), Gaps = 4/408 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E  + +G+ D P+ V G
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            A   TGTE+ F PS + FS  +F+++ L  R+RELSFLNS V I L+D+R  +      
Sbjct: 61  DAT-KTGTEIRFWPSEETFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFF 117

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WND Y E++ CFTNNIPQ
Sbjct: 118 KYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDSYQESIFCFTNNIPQ 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 178 RDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRK
Sbjct: 238 TKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 298 GALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG
Sbjct: 358 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDG 405


>gi|110612689|gb|ABG78307.1| GyrB [uncultured bacterium]
 gi|110612691|gb|ABG78308.1| GyrB [uncultured bacterium]
          Length = 407

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 246/410 (60%), Positives = 318/410 (77%), Gaps = 3/410 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+Q SYKVSGGLHGVGVSVVNALS WLKL+I R+G +++M F  G+   PL VTG   
Sbjct: 1   GEFDQNSYKVSGGLHGVGVSVVNALSDWLKLKIYRKGKVHQMEFHRGVPQAPLAVTG-TT 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + TGTEV FL S D F + +++++ L  R+RELSFLN+ V+I LID+R+ +       + 
Sbjct: 60  DKTGTEVHFLASVDTFVLVEYHFEILAKRIRELSFLNNGVKIELIDQRTGKS--ENFAFS 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG++ FV Y++R K  L        G +DNI++++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGVKGFVEYMNRTKTVLHPKVFYAIGEKDNITVEVAMQWNDSYSETVQCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+GLR+A+TR +  Y+E++  +KK K    GDD REG T VLS+K+PDP+FSSQTK+K
Sbjct: 178 THLTGLRTAMTRTLNQYIEQNEFAKKAKVETTGDDMREGITCVLSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+ VV   V   L+ +LEE+P +AKI+  K+++A+  R+AAR+AR++TRRKGV+D
Sbjct: 238 LVSSEVQPVVSEIVAAKLAEFLEENPNDAKIVCGKIVEAARAREAARKAREITRRKGVMD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFD
Sbjct: 298 TMGLPGKLADCQEKDPAMSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           K+L S EI TLITA+GTGIG+D F++ KLRYH+IIIMTDADVDG+HIRTL
Sbjct: 358 KLLGSAEIATLITAMGTGIGKDDFNLEKLRYHRIIIMTDADVDGSHIRTL 407


>gi|84310482|gb|ABC55389.1| DNA gyrase subunit B [Bacillus mojavensis]
          Length = 409

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/410 (51%), Positives = 292/410 (71%), Gaps = 3/410 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+   YKVSGGLHGVG SVVNALS+ L + + R+G I+   +  GI  + L V
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQVYNRGIPVSDLEV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G   + TGT   F+P  +IF+    + YD L +R+REL+FL   V I++ DKR  + R+
Sbjct: 61  IGETDH-TGTTTHFVPDPEIFTETTEYEYDPLANRVRELAFLTKGVNITIEDKREGQERK 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+++V YL+R K+ + + PI I+G +D I++++A+++NDGY  N+  FTNNI
Sbjct: 120 NEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDGYTSNIYSFTNNI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F 
Sbjct: 180 NTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE R++ ++  +  L  ++ E+P  A+ IV K L A+  R AA++AR+LTR
Sbjct: 240 GQTKTKLGNSEARTITDTLFSAALETFMLENPDAARKIVDKGLMAARARMAAKKARELTR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+I++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 300 RKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+L + E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDG
Sbjct: 360 EKARLDKILPNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDG 408


>gi|61661950|gb|AAX51630.1| DNA gyrase beta subunit [Photobacterium iliopiscarium]
          Length = 403

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 240/405 (59%), Positives = 314/405 (77%), Gaps = 4/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ NG+   PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCNGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTTNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|148971287|gb|ABR20181.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/423 (49%), Positives = 287/423 (67%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F++DTL HR REL+FLN  + I L D+ + 
Sbjct: 61  APLAVFGETT-QRGTIIRFWPDMTIMETDQFSFDTLAHRFRELAFLNPVLTIHLKDEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GG+++FVS+L+ +KK L +     +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFEGGVQSFVSFLNENKKTLHEVLFFRKTLEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P
Sbjct: 178 FANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A
Sbjct: 236 GPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|148470211|gb|ABQ66053.1| gyrase b [uncultured bacterium]
          Length = 421

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 211/425 (49%), Positives = 282/425 (66%), Gaps = 8/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVG SVVNALS   ++ + R+G +Y M F  G+  
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGASVVNALSERTEVEVCRDGKVYAMEFERGVKT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           + L   G     TGT+VTF P + IF    F+YD +  R REL++LN  +   + D+R+ 
Sbjct: 61  SELKTIGK-RQKTGTKVTFKPDAQIFPDITFDYDRVVVRCRELAYLNEGLAFYIEDERTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ----GSRDNISIDLAMRWNDGYHEN 272
           +       Y  GI  FV  L+  K+ +    I ++    G  + +S+ +AM++NDGY E+
Sbjct: 120 KK--DEFKYTRGIIQFVKQLNEGKEVIHNQVIYLEREEPGKDNPMSVQVAMQYNDGYAES 177

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  F NNI    GGTHLSG  +ALTR +  Y + +   K +K    GDD REG ++++SI
Sbjct: 178 LHSFANNINTPGGGTHLSGFETALTRTLNFYAKSNNLIKDEKEMPNGDDLREGLSAIVSI 237

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+F  QTK+KL + EV   V + VN+ L  WLEEHP +AK I++K L A   R+AA
Sbjct: 238 KVPNPQFEGQTKDKLGNGEVEGFVANAVNETLGTWLEEHPADAKRIIQKGLLARQAREAA 297

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LT RKG L    LPGKLADCS RD + +EL++VEG SAGG+AK GR R  QAILP
Sbjct: 298 RKARELT-RKGALSSGGLPGKLADCSSRDMESTELYIVEGRSAGGTAKAGRDRVFQAILP 356

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           ++GKILNVE+AR DKMLS +EI T++ AL  G+G    D++KLR  K++IMTDADVDG+H
Sbjct: 357 IKGKILNVEKARVDKMLSHEEIRTIVQALACGLGASDMDLSKLRCGKLVIMTDADVDGSH 416

Query: 513 IRTLL 517
           IRTLL
Sbjct: 417 IRTLL 421


>gi|33187343|gb|AAP97534.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 406

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 207/412 (50%), Positives = 285/412 (69%), Gaps = 6/412 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDSRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 406


>gi|213391526|gb|ACJ46504.1| gyrase B subunit [Shewanella sp. BSw20661]
          Length = 419

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 242/408 (59%), Positives = 316/408 (77%), Gaps = 4/408 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  + +G+ D P+   G
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRAGKVYEQFYTHGVPDAPIKEIG 67

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            A   TGTE+ F PS D F+  +F+++ L  R+RELSFLNS V I L+D+R  +      
Sbjct: 68  DA-VKTGTELRFWPSGDTFTNVEFHFEILAKRVRELSFLNSGVGIRLVDERDGKD--EFF 124

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ CFTNNIPQ
Sbjct: 125 KYEGGISAFVDYLNRNKTPINKDVFHFSHEREDGITVEVAMQWNDGYQENIFCFTNNIPQ 184

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + +Y+E+   +KK K +  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 185 RDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQ 244

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRK
Sbjct: 245 TKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRK 304

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKI NVE+
Sbjct: 305 GALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKISNVEK 364

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG
Sbjct: 365 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDG 412


>gi|110612637|gb|ABG78281.1| GyrB [uncultured bacterium]
 gi|110612661|gb|ABG78293.1| GyrB [uncultured bacterium]
          Length = 399

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 257/402 (63%), Positives = 318/402 (79%), Gaps = 3/402 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS  L L IKR G +YE  + +G+ D PL VTG A 
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSEELHLLIKRHGKVYEQHYHHGVPDAPLAVTGEA- 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           N TGT+V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R+ +    T  Y+
Sbjct: 60  NATGTQVWFKPSAQTFTNIEFHYDILAKRLRELSFLNSGVGILLFDERTNKQ--DTFRYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV +L+R+K P++ S   + G +DNIS++LA++WND Y EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEHLNRNKTPIIPSVFSMSGEKDNISVELALQWNDSYQENIFCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+GLRSALTR + +Y+E    +KK K +  GDD REG T+VLS+K+PDP+FSSQTK+K
Sbjct: 178 THLAGLRSALTRTLNNYIENEGHAKKAKVTTTGDDAREGLTAVLSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+SVVES V + L+ +L E+P  AK IV K+++A+  R+AARRARD+TRRK  LD
Sbjct: 238 LVSSEVKSVVESLVAEKLNDYLLENPTVAKTIVGKIIEAARAREAARRARDMTRRKSALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           KMLSSQE+ TLITALG GIG D +D +K+RYH+IIIMTDADV
Sbjct: 358 KMLSSQEVATLITALGCGIGSDEYDPDKIRYHRIIIMTDADV 399


>gi|148762481|dbj|BAF63942.1| DNA topoisomerase IV subunit B [Bacillus licheniformis]
          Length = 406

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 182/406 (44%), Positives = 261/406 (64%), Gaps = 10/406 (2%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YE++DN++DE L G+ + I V ++ D S +V D GRG+PT +H + G    E+I
Sbjct: 6   GLHHLVYEIVDNSVDEVLAGHGNHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEII 64

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNP 158
           +T LHAGGKF Q  YK SGGLHGVG SVVNALS WL + I+R+GN+Y   F N G     
Sbjct: 65  LTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGNVYRQRFENGGKPVTS 124

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G+    TGT + F P   +FS   FN++TL  RLRE +FL   ++I LID+R  + 
Sbjct: 125 LDKIGTTK-KTGTLIHFKPDPTMFSTTTFNFETLSERLRESAFLLKGLKIELIDER--DQ 181

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
            + T  Y+ GIEAFV+     +K  +   +  +G  + I +D A ++NDGY EN+L F N
Sbjct: 182 TKETFLYENGIEAFVA-YLNEEKDALSEVVSFEGEHNGIEVDFAFQFNDGYSENILSFVN 240

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP- 337
           N+  KDGGTH SG ++A+TR    Y  K    K+  +++ G D REG ++++S+++P+  
Sbjct: 241 NVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEEL 300

Query: 338 -RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
            +F  QTK KL +SE RS V++ V++ L+ +LEE+   A ++VKK + AS  R+AAR+AR
Sbjct: 301 LQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRETATLLVKKAIKASQAREAARKAR 360

Query: 397 D--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           +   + +K     A+L GKL     R+P K+EL+LVEGDSAGGSAK
Sbjct: 361 EEARSGKKRKKSEATLSGKLTPAQSRNPSKNELYLVEGDSAGGSAK 406


>gi|312271594|gb|ADQ56152.1| DNA gyrase subunit B [Vibrio sp. HB0308-1B5]
          Length = 373

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 211/375 (56%), Positives = 280/375 (74%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           GY   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHSEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS
Sbjct: 61  GLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R
Sbjct: 120 AQTFTNIEFHYDILAKRLRELSFLNSGVSIKLSDER-EEDKKDHFMYEGGIQAFVTHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|34850111|emb|CAE46927.1| DNA gyrase subunit B [Vibrio sp. Mel 34]
          Length = 404

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 251/406 (61%), Positives = 317/406 (78%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKFN  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFNDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|33187337|gb|AAP97531.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei]
          Length = 406

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/412 (50%), Positives = 285/412 (69%), Gaps = 6/412 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  F++  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFIT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPVEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 406


>gi|253826368|gb|ACT36487.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 220/408 (53%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ + PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHKPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D  DI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGEDL-DISKARYHKIIIMTDADVDG 404


>gi|148762473|dbj|BAF63938.1| DNA topoisomerase IV subunit B [Bacillus licheniformis]
          Length = 406

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 182/406 (44%), Positives = 261/406 (64%), Gaps = 10/406 (2%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YE++DN++DE L G+ + I V ++ D S +V D GRG+PT +H + G    E+I
Sbjct: 6   GLHHLVYEIVDNSVDEVLAGHGNHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEII 64

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNP 158
           +T LHAGGKF Q  YK SGGLHGVG SVVNALS WL + I+R+GN+Y   F N G     
Sbjct: 65  LTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGNVYRQRFENGGKPVTS 124

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G+    TGT + F P   +FS   FN++TL  RLRE +FL   ++I LID+R  + 
Sbjct: 125 LDKIGTTK-KTGTLIHFKPDPTMFSTTTFNFETLSERLRESAFLLKGLKIELIDER--DQ 181

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
            + T  Y+ GIEAFV+     +K  +   +  +G  + I +D A ++NDGY EN+L F N
Sbjct: 182 TKETFLYENGIEAFVA-YLNEEKDALSEVVSFEGEHNGIEVDFAFQFNDGYSENILSFVN 240

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP- 337
           N+  KDGGTH SG ++A+TR    Y  K    K+  +++ G D REG ++++S+++P+  
Sbjct: 241 NVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEEL 300

Query: 338 -RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
            +F  QTK KL +SE RS V++ V++ L+ +LEE+   A ++VKK + AS  R+AAR+AR
Sbjct: 301 LQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRETATLLVKKAIKASQAREAARKAR 360

Query: 397 D--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           +   + +K     A+L GKL     R+P K+EL+LVEGDSAGGSAK
Sbjct: 361 EEARSGKKRKKSEATLSGKLTPAQSRNPSKNELYLVEGDSAGGSAK 406


>gi|33186743|emb|CAE12285.1| gyrase B subunit [Vibrio splendidus]
 gi|34850123|emb|CAE46929.1| DNA gyrase subunit B [Vibrio sp. Mel 31]
          Length = 404

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 249/406 (61%), Positives = 316/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|148470213|gb|ABQ66054.1| gyrase b [uncultured bacterium]
          Length = 421

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 208/425 (48%), Positives = 276/425 (64%), Gaps = 8/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVG SVVNALS W  + + R+G IY M F  GI  
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGASVVNALSEWTSVEVCRDGKIYNMEFERGIKT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             + V G     +GT+VTF P   IF    F+YD +  R REL++LN S+   L D+RS 
Sbjct: 61  GEIKVIGK-RQKSGTKVTFKPDPQIFPEVVFDYDRIVARCRELAYLNESLAFYLEDERSG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ----GSRDNISIDLAMRWNDGYHEN 272
           E       Y  GI  FV  L+  K  +    + ++    G  + +S+ +A+++NDGY E+
Sbjct: 120 EK--DEFKYTKGIIQFVKQLNEGKDVIHSQVVYLERAEQGKENPMSVQVAVQYNDGYAES 177

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  F NNI    GGTHLSG ++ALTR +  Y + +   K +K    GDD REG ++++S+
Sbjct: 178 LHSFANNINTPGGGTHLSGFKTALTRTLNFYAKSNNLIKDEKEMPNGDDLREGLSAIVSV 237

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+F  QTK+KL + EV   V S VN+ L  WLEEHP +AK I++K + A   R+AA
Sbjct: 238 KVPNPQFEGQTKDKLGNGEVEGFVSSAVNEALGIWLEEHPGDAKRIIQKGILARQAREAA 297

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+    +  +D   LPGKL+DCS RD + +EL++VEG SAGG+AK GR R  QAILP
Sbjct: 298 RKARE-IDTQRGIDSGGLPGKLSDCSSRDMESTELYIVEGQSAGGTAKAGRDRVFQAILP 356

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           ++GKILNVE+AR DKML  +EI T++ AL  GIG +  D  KLRY K+ I TDADVDG+H
Sbjct: 357 IKGKILNVEKARVDKMLGHEEIRTIVQALACGIGANDMDRTKLRYGKLAITTDADVDGSH 416

Query: 513 IRTLL 517
           IRTLL
Sbjct: 417 IRTLL 421


>gi|61661886|gb|AAX51598.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661958|gb|AAX51634.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 403

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 240/405 (59%), Positives = 314/405 (77%), Gaps = 4/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKSAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|86651935|gb|ABD14450.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|110264873|gb|ABG57012.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|111380356|gb|ABH09611.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380358|gb|ABH09612.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380360|gb|ABH09613.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380362|gb|ABH09614.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380364|gb|ABH09615.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380366|gb|ABH09616.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380370|gb|ABH09618.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380372|gb|ABH09619.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380374|gb|ABH09620.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380376|gb|ABH09621.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380386|gb|ABH09626.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380388|gb|ABH09627.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380390|gb|ABH09628.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380392|gb|ABH09629.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 400

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 240/402 (59%), Positives = 314/402 (78%), Gaps = 3/402 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     Y
Sbjct: 61  -DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFMY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+D
Sbjct: 119 EGGIQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK
Sbjct: 179 GGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 299 LDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           FDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 FDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 400


>gi|303238191|ref|ZP_07324727.1| DNA gyrase subunit B domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302594237|gb|EFL63949.1| DNA gyrase subunit B domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 659

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/610 (27%), Positives = 296/610 (48%), Gaps = 19/610 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS   +   Y  +SI  LKG D V+ RPS+  G  DG  G  H ++E+L N+IDE+ EG+
Sbjct: 1   MSKQSKVEQYGNESITSLKGADRVRLRPSVIFGS-DGIEGCEHSVFEILSNSIDEAREGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
             +I V+   D S  + D+GRGIP D +++E     E++   L+AGGK+   S   Y+ S
Sbjct: 60  GRVIEVSRFKDNSVMIKDHGRGIPLDYNEKEQRYNWELVFCELYAGGKYKNNSGENYEFS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+G+G       S ++ + + R+G  Y++ F  G     L+        TGT + + P
Sbjct: 120 LGLNGLGSCATQYSSEYMDVTVYRDGFKYDLHFEKGENVGGLLKQKCNYEGTGTIIKWKP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSY 235
             D+F+  +   +   + L++ + +N+ ++  L D+ S E  E          I    S 
Sbjct: 180 DLDVFTDINIPLEYYSNILKKQAVVNAGLKFVLFDEESTETFEYCYENGIVDYITEVSSE 239

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV---LCFTNNIPQKDGGTHLSGL 292
                    ++  + +   D     + M+    ++  +     + N+   + GG     +
Sbjct: 240 KSFTGIQFYETSTKGRDREDKPEYKVKMQIAFSFNNEINMMEYYHNSSFLEHGGAPDKAV 299

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++A   +I   ++      KD+  +   D ++    V +       + +QTK+ + +  +
Sbjct: 300 KNAFVYEIDKCIKARGKYTKDEAKITFQDIQDSLILVTNSFSTITSYENQTKKSITNKFI 359

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDIASL 410
           +  +  F+   L  +  E+ +E+  I+++++     R+ A + R   ++K  G +DI++ 
Sbjct: 360 QEAMTDFLKQQLEVYFIENKMESDKIIEQIIVNKRSRETAEKTRINIKKKLTGNIDISNR 419

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
             K  DC  +D  + E+++VEGDSA G+ K GR  E QAI+P+RGKILN  +A +D +  
Sbjct: 420 VKKFVDCRTKDINRREIYIVEGDSALGACKLGRDAEFQAIIPVRGKILNCLKADYDNIFK 479

Query: 471 SQEIGTLITALGTGIGQ--------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           S+ I  L+  LG G+          ++FDIN  R+ KIII TDADVDG  IRTL+L   +
Sbjct: 480 SEIIVDLLKVLGCGVEIKSKHNKELNTFDINNFRWSKIIICTDADVDGFQIRTLILAMIY 539

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           R +P+LI+ G ++I + PL+ IT      +   ++   D +   +    ++         
Sbjct: 540 RLVPTLINLGKVFIAESPLFEITHKDKTYFAYSDKEKNDIVAKLNGKYSVQRSKGLGENQ 599

Query: 583 SKNDLRNFID 592
            +      ++
Sbjct: 600 PEMMWETTMN 609



 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 109/314 (34%), Gaps = 40/314 (12%)

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
             +T +  Q    I N F+           +   + +++++   +  +    +++     
Sbjct: 341 STITSYENQTKKSITNKFIQEAMTDFLK--QQLEVYFIENKMESDKIIEQIIVNKRSRET 398

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVS 633
            +   +  K  L   ID + ++ K +     + ++  I                     +
Sbjct: 399 AEKTRINIKKKLTGNIDISNRVKKFVDCRTKDINRREIYIVEGDSALGACKLGRDAEFQA 458

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIF----- 683
           +       LN +    +  +   I    + V     +  ++  +E    + ++       
Sbjct: 459 IIPVRGKILNCLKADYDNIFKSEIIVDLLKVLGCGVEIKSKHNKELNTFDINNFRWSKII 518

Query: 684 ---SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC-------------------S 721
                     +I +  +   Y  + +LI  G       P                     
Sbjct: 519 ICTDADVDGFQIRTLILAMIYRLVPTLINLGKVFIAESPLFEITHKDKTYFAYSDKEKND 578

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           ++  +   G+   S+QR KGLGE     +WETT+NP++R L++V   D    + +F  L+
Sbjct: 579 IVAKL--NGK--YSVQRSKGLGENQPEMMWETTMNPESRKLIKVMPDDVESTERMFDVLL 634

Query: 782 GDEVEPRREFIQEN 795
           GD +  R+ FI+EN
Sbjct: 635 GDNLPGRKNFIEEN 648


>gi|61661866|gb|AAX51588.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661870|gb|AAX51590.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661882|gb|AAX51596.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661884|gb|AAX51597.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|148793366|gb|ABR12747.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|148793384|gb|ABR12756.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|148793388|gb|ABR12758.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|148793396|gb|ABR12762.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 403

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 239/405 (59%), Positives = 314/405 (77%), Gaps = 4/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|198250529|gb|ACH85246.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 220/408 (53%), Positives = 298/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR    QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDHHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +IT LGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITTLGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|13516989|dbj|BAB40377.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC01599]
          Length = 478

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 225/475 (47%), Positives = 307/475 (64%), Gaps = 9/475 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ LK  + R G I E  F  GI   P   TG   +  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTDLKATVYRNGVITEQEFKIGIPQYPAKETGKT-DRR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFY 225
           GT + F P   IF+V ++ Y+T+ +RLRE+++LN+ ++I L D    +    P+    + 
Sbjct: 60  GTTIHFKPDDSIFTVTEYKYETIANRLREMAYLNAGIRIFLKDLREIEEDGNPKSDEFYS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV YLD  ++ ++++PI I+    ++ + +AM +N  Y ENV+ + N I   +G
Sbjct: 120 EGGLVEFVQYLDETREKIIEAPIYIESIDQDVPVQVAMSYNSSYSENVVSYVNTINTYEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R ALTR + SY +KS    K K  V GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHVTGFRRALTRTLKSYADKSGMLDKLKIEVSGDDFREGLTAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +S+V   V+S V++ L  WLEEHP EAK IV KV+ A+  R AAR+AR++ +RK VL
Sbjct: 240 KLGNSDVVGAVDSAVSEVLQTWLEEHPKEAKTIVGKVILAAQARHAARKAREMVQRKNVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADC+  DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+A  
Sbjct: 300 GGGGLPGKLADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHE 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  + EI  ++TALG   G  + D       LRYHKIIIMTDAD+DG+HIRTL+LT F
Sbjct: 360 HKIYDNDEIKNILTALGVKFGTVNDDKELDLAGLRYHKIIIMTDADIDGSHIRTLILTLF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           FR M  LI NG++YI  PPLY + RGK  +Y   EE  +  +   +   + +   
Sbjct: 420 FRYMRPLIENGYIYIALPPLYLLKRGKDERYCWTEEERKVLISEMAKDGKEDSVN 474


>gi|148971317|gb|ABR20196.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 210/423 (49%), Positives = 286/423 (67%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGAPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F++DTL HR REL+FLN  + I L ++ + 
Sbjct: 61  APLAVFGETA-KRGTIIRFWPDMTIMETDQFSFDTLSHRFRELAFLNPVLTIHLKEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P
Sbjct: 178 FANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A
Sbjct: 236 GPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|148971311|gb|ABR20193.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 212/423 (50%), Positives = 287/423 (67%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F++DTL HR REL+FLN  + I L D+ + 
Sbjct: 61  APLAVFGETT-QRGTIIRFWPDMTIMETDQFSFDTLAHRFRELAFLNPVLTIHLKDEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ GLR+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P
Sbjct: 178 FANNIHTREGGTHVRGLRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A
Sbjct: 236 GPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|209863964|gb|ACI88900.1| GyrB [Acidianus brierleyi]
          Length = 436

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 248/439 (56%), Positives = 324/439 (73%), Gaps = 21/439 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL- 155
           EVIMT LHAGGKF+Q SYKVSGGLHGVGVS VNALS WL+L ++R+G +  + F  G + 
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVNLIEFAKGEVQ 60

Query: 156 ----------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
                            +P+ + G A +  GTEV FL   +IF+  +F+Y+ L  R+REL
Sbjct: 61  NRIIETVTGPDGQPVEVSPMKIVG-ATDKRGTEVHFLADEEIFTNVEFHYEVLSKRIREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLN+ V I L+D+R+ +       + GG++ FV Y++R K  L  +       ++ I++
Sbjct: 120 SFLNNGVHIRLVDQRTGKE--EDFAFAGGVKGFVEYINRAKTTLHPNIFYANAEKEGITV 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +K+ K    G
Sbjct: 178 EVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKRAKVETSG 237

Query: 320 DDCREGFTSVLSIKMPDPRFSSQT-KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           DD REG   VLS+K+P+P+FSSQT ++KLVSSEVR  V   V   L+ +L E P +AKII
Sbjct: 238 DDMREGLACVLSVKVPEPKFSSQTKRDKLVSSEVRLPVGELVGKALTDFLLETPGDAKII 297

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
             K++DA+  R+AAR+AR++TRRKGV+D   LPGKLADC E+DP +SELFLVEGDSAGGS
Sbjct: 298 CGKIVDAARAREAARKAREMTRRKGVMDGMGLPGKLADCQEKDPAQSELFLVEGDSAGGS 357

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AKQGR R+ QAILPL+GK LNVERARFDKMLSSQE+ TLITALGTGIG++ ++++KLRYH
Sbjct: 358 AKQGRDRKFQAILPLKGKTLNVERARFDKMLSSQEVLTLITALGTGIGKEDYNLDKLRYH 417

Query: 499 KIIIMTDADVDGAHIRTLL 517
           +II MTDADVDG+HIRTLL
Sbjct: 418 RIITMTDADVDGSHIRTLL 436


>gi|62910165|gb|AAY21053.1| DNA gyrase beta subunit [Photobacterium angustum]
          Length = 401

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/403 (60%), Positives = 315/403 (78%), Gaps = 3/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I+R G+IY+  + +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIQRAGHIYQQVYRHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               TGT + F PS D F+  +F+YD L  RLRELSFLNS V I+L D+R  + +E    
Sbjct: 61  TE-KTGTRIRFWPSEDTFTNIEFHYDILAKRLRELSFLNSGVSINLSDER-EDGKEDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+
Sbjct: 119 YEGGIRAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|159146588|gb|ABW90738.1| DNA gyrase beta subunit [Vibrio cholerae]
          Length = 400

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 241/402 (59%), Positives = 312/402 (77%), Gaps = 3/402 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    
Sbjct: 61  TE-RTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|253826364|gb|ACT36485.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 221/408 (54%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILP RGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPQRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|6946703|dbj|BAA90674.1| DNA gyrase subunit B [Chryseobacterium indologenes]
          Length = 476

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 218/468 (46%), Positives = 316/468 (67%), Gaps = 9/468 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ +   + R+GNIY+  +  G     +   G +    
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNEMVTTVYRDGNIYQQIYSKGKAQTQVEEIGHSEKK- 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFY 225
           GT+  F P   IF+   +NYDTL  RLRELS+LN  + I+L D+R        R      
Sbjct: 60  GTKQFFQPDDTIFTELVYNYDTLASRLRELSYLNKGITITLTDEREKLEDGSFRSEVFHS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG++ FV+Y+D +++ +M+  I ++G RD+I +++AMR+N  ++EN+  + NNI   +G
Sbjct: 120 EGGLKEFVAYIDGNRESIMEHVIFMEGERDDIPVEVAMRYNTSFNENLHSYVNNINTHEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R ALTR +  Y ++     K+K  + GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GTHLAGFRRALTRTLKKYADELGLPAKEKVEITGDDFREGLTAVVSVKVMEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +SEV   V+  V + L+ +LEE+P EAK+IV+KV+ A+  R AA++AR++ +RK  +
Sbjct: 240 KLGNSEVSGAVDKIVGEMLTNFLEENPNEAKLIVQKVVLAAKARQAAKKAREMVQRKSPM 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             + LPGKL+DCS +DP +SE+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++  
Sbjct: 300 GGSGLPGKLSDCSSKDPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSML 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  + TALG  +G +      ++ KLRYHKI+IMTDAD+DG+HI TL+LTFF
Sbjct: 360 HKVYDNEEIRNIYTALGVSVGTEEDSKALNMAKLRYHKIVIMTDADIDGSHISTLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FR M  LI NG++YI +PPLY + +G    Y  +E+  E++ ++ S  
Sbjct: 420 FRYMKELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLDMSPD 467


>gi|110264857|gb|ABG57004.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264859|gb|ABG57005.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 404

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/406 (59%), Positives = 316/406 (77%), Gaps = 4/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++   
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 MYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADV 404


>gi|13516987|dbj|BAB40376.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC01539]
          Length = 478

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 225/468 (48%), Positives = 305/468 (65%), Gaps = 9/468 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ LK  + R G I E  F  GI   P    G   +  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTDLKATVYRNGVITEQEFKIGIPQYPAKQVG-TTDRR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFY 225
           GT + F P + IF++ ++ Y+T+ +RLRE+SFLN+ ++I L D    +     +    + 
Sbjct: 60  GTTIHFKPDASIFAITEYKYETIANRLREMSFLNAGIRIFLTDLRETEDDGSVKSDEFYS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV YLD  ++ ++ +PI I   ++ + + +AM +N  Y ENV+ + N I   +G
Sbjct: 120 EGGLVEFVQYLDVSREKIIDTPISIDTEKNGVPVQVAMNYNSSYSENVVSYVNTINTYEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G+H+SG R ALTR + SY +KS    K K  V GDD REG T+V+S+K+ +P+F  QTK 
Sbjct: 180 GSHVSGFRRALTRTLKSYADKSGMLDKLKMEVSGDDFREGLTAVISVKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +S+V   V+S V++ L  WLEEHP EAKIIV KV+ A+  R AAR+AR++ +RK VL
Sbjct: 240 KLGNSDVVGAVDSAVSEALQIWLEEHPKEAKIIVGKVILAAQARHAARKAREMVQRKNVL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADC+  DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+A  
Sbjct: 300 GGGGLPGKLADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHE 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  ++TALG  IG  + D       LRYHKIIIMTDAD+DG+HIRTL+LT F
Sbjct: 360 HKIYDNEEIKNILTALGVKIGTVNDDKELDLSSLRYHKIIIMTDADIDGSHIRTLILTLF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FR M +LI  G++YI  PPLY + RGK  +Y   EE  +      +  
Sbjct: 420 FRYMRTLIEYGYVYIALPPLYLLKRGKDERYCWTEEERKILTAEMAKD 467


>gi|34850095|emb|CAE46919.1| DNA gyrase subunit B [Vibrio gigantis]
          Length = 404

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 246/406 (60%), Positives = 314/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKFN  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFNDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|110612709|gb|ABG78317.1| GyrB [uncultured bacterium]
          Length = 409

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 252/412 (61%), Positives = 314/412 (76%), Gaps = 3/412 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L IKREG ++E  + NG    PL V   A
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLHLLIKREGKLHEQEYRNGDAVYPLQVVADA 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGTE+ F PS+ +F+   FNYD L  RLRELSFLNS V+I L D+R  +       Y
Sbjct: 61  -QGTGTEIRFKPSAKVFTHIQFNYDILARRLRELSFLNSGVRILLHDQRDDK--HDVFQY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI+AFV +L+R+K  L ++        +  ++++A++WND Y E V CFTNNIPQ+DG
Sbjct: 118 QGGIKAFVEHLNRNKTALHETVFHFIAEHERTTVEIALQWNDSYQETVYCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+A TR I +Y+E     KK+K  + GDD REG T ++S+K+PDP+FSSQTK+
Sbjct: 178 GTHLAGFRAAPTRTINNYIETEGLLKKEKIPMTGDDAREGLTGIVSVKLPDPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR VVES +      +L E P+E+KIIV KV++A+  R+AAR+AR++TRRKG L
Sbjct: 238 KLVSSEVRGVVESLMAGKFEEFLLEKPVESKIIVGKVIEAARAREAARKAREMTRRKGAL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D+A LPGKLADC ERDP  SELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF
Sbjct: 298 DVAGLPGKLADCQERDPALSELFLVEGDSAGGSAKQGRDRKCQAILPLKGKILNVEKARF 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           DKMLSS E+GTLITALG GIG++ F+I+KLRY++III+TDADVDG+HIRTLL
Sbjct: 358 DKMLSSVEVGTLITALGCGIGKEEFNIDKLRYYRIIIITDADVDGSHIRTLL 409


>gi|253826360|gb|ACT36483.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 220/408 (53%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D  DI+K RYH+IIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGEDL-DISKARYHRIIIMTDADVDG 404


>gi|33187331|gb|AAP97528.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 406

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/412 (50%), Positives = 284/412 (68%), Gaps = 6/412 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R  EL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFHELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +++S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 406


>gi|33187291|gb|AAP97508.1| DNA gyrase subunit B [Campylobacter lari]
          Length = 404

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 205/410 (50%), Positives = 278/410 (67%), Gaps = 6/410 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   + R+G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVHRDGEIYRQEFSEGKVTSDFE 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
             G     TGT + F P   IF + +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  TIG-TSKKTGTIIEFWPDDQIFEITNFDYEILAKRFRELAYLNPKITINFKDNRIGKA-- 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVT--DLNKKQALTKAIFFNVDEEDVNVEVALLYNDSYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDSKITGEDVREGLIAVVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL SS VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSSYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K    + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKETSSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERTFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+L S++I  +ITA G GIG D FDI KLRYHKIIIMTDADVDG
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIG-DEFDIEKLRYHKIIIMTDADVDG 404


>gi|326201733|ref|ZP_08191604.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Clostridium papyrosolvens DSM 2782]
 gi|325988333|gb|EGD49158.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Clostridium papyrosolvens DSM 2782]
          Length = 660

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/667 (25%), Positives = 305/667 (45%), Gaps = 32/667 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ + + + Y  +SI  LKG D V+ RP +  G  DG  G  H  +E+L N+IDE+ EG+
Sbjct: 1   MTKDSRKNEYGNESISSLKGADRVRLRPGVIFGS-DGLDGCEHSFFEILSNSIDEAREGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
            ++I VT   D S  + D GRG+P D + +E     E++   L+AGGK+   S   Y+ S
Sbjct: 60  GNVIEVTRFADKSIMIQDWGRGLPVDYNTKEERFNWELVYCELYAGGKYQNNSGENYEYS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+G+G       S +  + + R+G  Y++ F  G     L       + T T   + P
Sbjct: 120 LGLNGLGACATQYSSEYFDVTVFRDGYRYDLHFEKGENVGGLKKEKCKYDKTSTIQKWRP 179

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             D+F+      +  Q  L++ + +N+ ++  L D+ S E       Y+ GI  +V  + 
Sbjct: 180 DIDVFTEIHIPLEHFQTVLKKQAVVNAGLKFILKDEESGETF--IYLYENGIVDYVKEIT 237

Query: 238 RHKKPLMQSPIRIQG--------SRDNISIDLAMR-WNDGYHENVLCFTNNIPQKDGGTH 288
           +  +         +G         +    + + +    +     +  + N+   + GG  
Sbjct: 238 K--ETGFTEIQYYEGSTKGRDREDKPEYKVKMQIAFCFNNQTNLLEYYHNSSFLEYGGAP 295

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
              +++AL  +I   ++      KD+  +   D  +    V++       + +QTK+ + 
Sbjct: 296 DKAVKNALIYEIDKGIKARGKYNKDESKITFADIEDSLILVVNSFSTITSYENQTKKSIT 355

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLD 406
           +  ++  +  F    L  +  E+  E+  I++++L     R+ A + R   ++K  G +D
Sbjct: 356 NKFIQEAMTDFFKQQLEIYFIENKFESDKIIEQILVNKRSRETAEKTRINIKKKLSGNVD 415

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I++   K  DC  +D  K E+++VEGDSA G+ K GR  E QAI+P+RGKILN  +A +D
Sbjct: 416 ISNRVKKFVDCRTKDITKREIYIVEGDSALGACKLGRDAEFQAIMPVRGKILNCLKAEYD 475

Query: 467 KMLSSQEIGTLITALGTGIGQ--------DSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
            +  ++ I  L+  LG G+          ++FD+  LR+ K+II TDADVDG  IRTL+L
Sbjct: 476 SIFKNEIIVDLLKVLGCGVEIKSKHNKDLNTFDMANLRWDKVIICTDADVDGFQIRTLIL 535

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T  +R +P+L+  G ++I + PL+ IT      +   E+   + L     S+        
Sbjct: 536 TMLYRLVPTLLTEGKVFIAESPLFEITCKNKAYFAYTEKEKAEILAKLKDSKYTIQRSKG 595

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            G      +         ++   +           +  ++  V   ++       +    
Sbjct: 596 LGENEPEMMWQT-----TMNPASRRLIKVMPSDVEKTTMMFDVLLGDNLAGRKQFIEDNG 650

Query: 639 ANRLNFI 645
           +  L+ I
Sbjct: 651 SKYLDMI 657



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 111/314 (35%), Gaps = 39/314 (12%)

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
             +T +  Q    I N F+       +   +   + +++++   +  +    +++     
Sbjct: 341 STITSYENQTKKSITNKFIQEAMTDFFK--QQLEIYFIENKFESDKIIEQILVNKRSRET 398

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVS 633
            +   +  K  L   +D + ++ K +     +  K  I                     +
Sbjct: 399 AEKTRINIKKKLSGNVDISNRVKKFVDCRTKDITKREIYIVEGDSALGACKLGRDAEFQA 458

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIF----- 683
           +       LN +  + +  +   I    + V     +  ++  ++    + +++      
Sbjct: 459 IMPVRGKILNCLKAEYDSIFKNEIIVDLLKVLGCGVEIKSKHNKDLNTFDMANLRWDKVI 518

Query: 684 ---SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP-------------------CS 721
                     +I +  +   Y  + +L+  G       P                     
Sbjct: 519 ICTDADVDGFQIRTLILTMLYRLVPTLLTEGKVFIAESPLFEITCKNKAYFAYTEKEKAE 578

Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           +L  +    +   ++QR KGLGE     +W+TT+NP +R L++V  +D  +   +F  L+
Sbjct: 579 ILAKL-KDSK--YTIQRSKGLGENEPEMMWQTTMNPASRRLIKVMPSDVEKTTMMFDVLL 635

Query: 782 GDEVEPRREFIQEN 795
           GD +  R++FI++N
Sbjct: 636 GDNLAGRKQFIEDN 649


>gi|312271576|gb|ADQ56143.1| DNA gyrase subunit B [Vibrio sp. K0606-41]
 gi|312271580|gb|ADQ56145.1| DNA gyrase subunit B [Vibrio sp. K0706-35]
 gi|312271582|gb|ADQ56146.1| DNA gyrase subunit B [Vibrio sp. PS0705-3A4]
 gi|312271588|gb|ADQ56149.1| DNA gyrase subunit B [Vibrio sp. K0406-01S]
          Length = 373

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 209/375 (55%), Positives = 283/375 (75%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GHCKDIVVTIHEDNSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PS
Sbjct: 61  GLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV +L+ 
Sbjct: 120 AETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADK-HDHFMYEGGIQAFVDHLNT 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALT
Sbjct: 179 NKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|111380368|gb|ABH09617.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|111380380|gb|ABH09623.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|159146566|gb|ABW90727.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 400

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 240/402 (59%), Positives = 314/402 (78%), Gaps = 3/402 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     Y
Sbjct: 61  -DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLSDER-EEGKHDHFMY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+D
Sbjct: 119 EGGIQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK
Sbjct: 179 GGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 299 LDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           FDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 FDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 400


>gi|33187283|gb|AAP97504.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/412 (50%), Positives = 284/412 (68%), Gaps = 6/412 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +++S+K+ +P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVSEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 406


>gi|198042714|gb|ACH81182.1| GyrB [Vibrio sp. UST010723-012]
          Length = 401

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 240/403 (59%), Positives = 315/403 (78%), Gaps = 3/403 (0%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    
Sbjct: 1   VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQA 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           PL V G   + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  E
Sbjct: 61  PLAVIGDT-DKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDER-EE 118

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCF 276
            +     ++GGI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CF
Sbjct: 119 DKSDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDYEREDGIAVEVAMQWNDGFQENIYCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PD
Sbjct: 179 TNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR
Sbjct: 239 PKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 299 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH 
Sbjct: 359 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 401


>gi|6939949|dbj|BAA90684.1| DNA gyrase subunit B [Pedobacter heparinus DSM 2366]
          Length = 479

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 221/467 (47%), Positives = 307/467 (65%), Gaps = 10/467 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ LK  + REG I+   +  G     +   G      
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTHLKAEVHREGKIWVQEYNIGKPLYEVKSIGDTDKL- 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMF 224
           GT +TF P   IF+    + YDTL  RLRELSFLN  ++++L D+R    + E       
Sbjct: 60  GTIITFTPDPTIFTQTTEYRYDTLASRLRELSFLNKGIKLTLTDERETLENGEFLSELFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            +GG++ FV +LD  +  L+  PI ++G ++ I ++LA+++ND Y ENV  + NNI   +
Sbjct: 120 SEGGLKEFVQFLDGTRPSLIPEPIYVEGIKNGIPVELALQYNDSYSENVHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++G R  LTR + +Y +KS   K  K  + GDD REG T+V+S+K+ +P+F  QTK
Sbjct: 180 GGTHIAGFRRGLTRTLKAYADKSGLLKNVKFEITGDDFREGLTAVISVKVQEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEV   V+  V + L  +LEE+P EA++IV KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNSEVMGAVDIAVGEALGIYLEEYPKEARMIVNKVILAATARAAARKAREMVQRKSV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  + LPGKLADCS+ DP+K EL+LVEGDSAGG+AKQGR R  QAILPL+GKILNVE+A 
Sbjct: 300 MGGSGLPGKLADCSDSDPEKCELYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  + EI  + TALG  IG +  D      KLRYHKI+IMTDAD+DG+HI TL+LTF
Sbjct: 360 EHKIYENDEIKNMFTALGVSIGTEEDDKALNLAKLRYHKIVIMTDADIDGSHITTLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           FFR M +LI  G++YI  PPLY + +GK  +Y  +++  +D +    
Sbjct: 420 FFRYMKALIEAGYVYIAAPPLYQVKKGKEFEYCWNDKQRDDAVQRLK 466


>gi|110264841|gb|ABG56996.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264843|gb|ABG56997.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264851|gb|ABG57001.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264853|gb|ABG57002.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 404

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/406 (59%), Positives = 316/406 (77%), Gaps = 4/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++   
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 MYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADV 404


>gi|290794985|gb|ADD64511.1| DNA gyrase B [Vibrio splendidus]
 gi|290794987|gb|ADD64512.1| DNA gyrase B [Vibrio splendidus]
          Length = 404

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 249/406 (61%), Positives = 315/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|159146586|gb|ABW90737.1| DNA gyrase beta subunit [Vibrio cholerae]
          Length = 400

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 241/402 (59%), Positives = 312/402 (77%), Gaps = 3/402 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    
Sbjct: 61  TE-RTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLSDER-EEDKKDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|297581951|ref|ZP_06943871.1| DNA gyrase subunit B [Vibrio cholerae RC385]
 gi|297533818|gb|EFH72659.1| DNA gyrase subunit B [Vibrio cholerae RC385]
          Length = 247

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/248 (55%), Positives = 180/248 (72%), Gaps = 2/248 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +
Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ + 
Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239

Query: 247 PIRIQGSR 254
                  R
Sbjct: 240 VFHFNQER 247


>gi|148971301|gb|ABR20188.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 210/423 (49%), Positives = 284/423 (67%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F++DTL HR REL+FLN  + I L D+ + 
Sbjct: 61  APLAVFGETT-QRGTIIRFWPDMTIMETDQFSFDTLAHRFRELAFLNPVLTIHLNDEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S++ P
Sbjct: 178 FANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRTP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A
Sbjct: 236 GPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKI IMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKITIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|33145994|emb|CAD57637.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 404

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 248/406 (61%), Positives = 314/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKL DC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLVDCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|295979459|dbj|BAJ07402.1| DNA gyrase subunit B [alpha proteobacterium MBIC3818]
 gi|295979461|dbj|BAJ07403.1| DNA gyrase subunit B [alpha proteobacterium MBIC3819]
          Length = 307

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 198/307 (64%), Positives = 240/307 (78%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+AD +TVTLN DGS TVSDNGRGIPTDLH EEG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADHVTVTLNPDGSVTVSDNGRGIPTDLHPEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS+ L LRI R    + M+F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSTKLDLRIWRNDQEHFMTFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFLPS + F+  +F++ TL+HRLREL+FLNS  +I L DK
Sbjct: 121 DAVGPLEVVGPANGKKGTEVTFLPSPETFTKTEFDFATLEHRLRELAFLNSGARIILTDK 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  E     ++Y+GG+EAFV YLDR K PL+++PI ++  +D I+++ AM WND YHE V
Sbjct: 181 RGVEDVVEELYYEGGLEAFVRYLDRAKHPLIETPIAVRAEKDGITVEAAMWWNDSYHEQV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+T Y E +   KK+K S+ GDDCREG T VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVTGYAESTGLMKKEKVSLSGDDCREGLTCVLSVK 300

Query: 334 MPDPRFS 340
           +PDP+FS
Sbjct: 301 VPDPKFS 307


>gi|110612705|gb|ABG78315.1| GyrB [uncultured bacterium]
          Length = 412

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 253/413 (61%), Positives = 313/413 (75%), Gaps = 4/413 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +YKVSGGLHGVGVSVVNALSS LKL I+R G  YE  + +G+   PL +TG A
Sbjct: 3   GGKFDDNTYKVSGGLHGVGVSVVNALSSVLKLAIRRNGQTYEQEYHDGVPQQPLSITGPA 62

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT+V F PS   F+   F++DTL  RLRELSFLNS V+I L D+RS E       Y
Sbjct: 63  -QGTGTKVHFWPSPATFNNIHFSFDTLAKRLRELSFLNSGVRIVLQDERSSEQ--EVFQY 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GG+ AFV YL+ HK  L Q      Q     I++++AM+WNDGY E V CFTNNIPQ+D
Sbjct: 120 EGGLSAFVHYLNTHKTALNQVFHFTAQAEDSGITVEIAMQWNDGYQEAVYCFTNNIPQRD 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL G R+ALTR + +Y+E+    KK+K S  G+D REG T+++S+K+PDP+FSSQTK
Sbjct: 180 GGTHLQGFRTALTRTLNTYMEREGYLKKEKVSTSGEDAREGLTAIVSVKVPDPKFSSQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV   V + +N+    +L E+P   K IV K++DA+  R+AAR+AR++TRRKG 
Sbjct: 240 DKLVSSEVTQAVANLMNEKFEEYLLENPQAGKSIVSKMIDAARAREAARKAREMTRRKGA 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LDIA LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+AR
Sbjct: 300 LDIAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRRMQAILPLKGKILNVEKAR 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           FDKMLSS E+GTLITALG GIG++ ++ +KLRYHKIII+TDADVDG+HIRTLL
Sbjct: 360 FDKMLSSAEVGTLITALGCGIGREEYNPDKLRYHKIIIITDADVDGSHIRTLL 412


>gi|167041928|gb|ABZ06666.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [uncultured marine microorganism HF4000_137B17]
          Length = 334

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/305 (54%), Positives = 212/305 (69%), Gaps = 9/305 (2%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
            +   S Y ADSI++LKGL+AV+KRP MYIGDTD  +GLHHM+YEV+DN+IDE+L+GY  
Sbjct: 7   QDNSKSKYRADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALDGYCT 66

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT+N D S +V DNGRGIP D+HK E  SAAEVIMT+LHAGGKF+  SYK+SGGLHG
Sbjct: 67  NIKVTINSDQSISVEDNGRGIPVDIHKGERKSAAEVIMTQLHAGGKFDHDSYKISGGLHG 126

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L I R+   Y + F +G   +PL V G   N TGT + FLPS  +F
Sbjct: 127 VGVSVVNALSEKLILGIFRDKKEYFVEFKDGRALSPLKVKGKT-NKTGTFINFLPSKKVF 185

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S+  F+   LQ R+REL+FLN  + I L+DK + + +E    + GGI+ FV +LD++K  
Sbjct: 186 SLTKFSSSILQKRMRELAFLNKGLSIILVDKTAKKEKEYKNKHNGGIQEFVEFLDKNKTA 245

Query: 243 --------LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
                   L + PI I G +DN+ ++ +++WN GY E +L F NNI Q+DGGTHL G RS
Sbjct: 246 LVNKNDVNLFKKPIYISGLKDNVMVECSLKWNAGYSEEMLPFANNIHQRDGGTHLLGFRS 305

Query: 295 ALTRQ 299
           ALTR 
Sbjct: 306 ALTRV 310


>gi|190341290|gb|ACE74722.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 406

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/408 (50%), Positives = 290/408 (71%), Gaps = 3/408 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+   YKVSGGLHGVG SVVNALS+ L   + R+G I+  ++  G+    L + G
Sbjct: 1   HAGGKFDGSGYKVSGGLHGVGASVVNALSTELDATVHRDGKIHRQTYKRGVPVTDLEIIG 60

Query: 164 SAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              + TGT   F+P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+  
Sbjct: 61  ETDH-TGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE 119

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI+++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI  
Sbjct: 120 YHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINT 179

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK P P+F  Q
Sbjct: 180 YEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPGPQFEGQ 239

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK
Sbjct: 240 TKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRK 299

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+I++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 300 SALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 359

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYH+++IMTDADVDG
Sbjct: 360 ARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHRVVIMTDADVDG 406


>gi|198042692|gb|ACH81171.1| GyrB [Pseudoalteromonas sp. UST050418-013]
          Length = 405

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 245/407 (60%), Positives = 316/407 (77%), Gaps = 6/407 (1%)

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D P
Sbjct: 1   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L V G +   TGTE+ F PS + F+  DF+Y+ L  RLRELSFLNS V I L D+R  E 
Sbjct: 61  LAVIGDSE-TTGTELRFWPSGETFTNLDFHYEILAKRLRELSFLNSGVSIILNDER-EEN 118

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCF 276
           +     Y+GGI+AFV YL+R+K P+ +        R+   IS++++M+WND Y EN+ CF
Sbjct: 119 KSDHFKYEGGIQAFVEYLNRNKTPIHKGVFHFTHEREEDGISVEVSMQWNDAYQENIYCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKM 334
           TNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+
Sbjct: 179 TNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DAS  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 AREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+II
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRII 405


>gi|210630764|ref|ZP_03296588.1| hypothetical protein COLSTE_00473 [Collinsella stercoris DSM 13279]
 gi|210160360|gb|EEA91331.1| hypothetical protein COLSTE_00473 [Collinsella stercoris DSM 13279]
          Length = 701

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/673 (26%), Positives = 309/673 (45%), Gaps = 39/673 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N  N  Y  DSI+ LK  + V+ RP++  G  DG  G  H  +E+L N++DE+ +GY
Sbjct: 37  MAKNTAN--YGNDSIRQLKDEERVRLRPAVIFGS-DGLDGCAHAAFEILSNSVDEARQGY 93

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
            ++IT+T   DGS  V DNGRG P D +  E     E++   L+AGGK+N      Y  S
Sbjct: 94  GNLITLTAFRDGSIQVEDNGRGCPLDWNPSEKRFNWELVFCELYAGGKYNNNEGGDYDFS 153

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF----INGILDNPLVVTGSAGNDTGTEV 173
            G +G+G       S ++ + + R+GN Y + F    + G     L +  +  N TGT +
Sbjct: 154 LGTNGLGSCATQYASEYMDVTVWRDGNKYSLHFKKGKVVGAKKKALEIEPTDENRTGTTI 213

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK-RSPEPREITMFYKGGIEAF 232
            + P  ++F+     ++  +  +R  + +N++V   L  +    E  E    Y  GIE +
Sbjct: 214 KWRPDLEVFTSISIPHEWYRETMRRQAVVNANVTFRLRIEGDDGEFTEEDFCYPKGIEDY 273

Query: 233 VSYLDRHKKPLMQSPIRIQGSR----------DNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           V          +  P  I+  R           N+ I   + ++  +      + N+   
Sbjct: 274 VLEKVGA--DYLTEPFFIETERRGRDREDLPDYNVKITACLCFSRTFQMQ-EYYHNSSWL 330

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           ++GG+     RSALT  I +Y++      K++ S+   D ++    V +       + +Q
Sbjct: 331 ENGGSPEKAARSALTSAIDAYIKSQGKYNKNESSIKWQDVQDCLVLVTNCFSTQTSYENQ 390

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTR 400
           TK+ + +  ++  + +F  + L+ +L E+   A  I+++VL     R+ A + R    T 
Sbjct: 391 TKKAINNRFIQQAMTAFFKERLATYLIENKDAANKIMEQVLINKRSRENAEKTRQSIKTN 450

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
            +   D+A+   K  DC  +D  + E+++VEGDSA G+ +  R  E Q ++P+RGKILN 
Sbjct: 451 LQQKTDMANRVQKFIDCRSKDKTRREVYIVEGDSAAGAIRTSRDAEFQGVMPVRGKILNC 510

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDS--------FDINKLRYHKIIIMTDADVDGAH 512
            +  + ++  S  I  L+  LG G+            FD++ L + K+II TDADVDG H
Sbjct: 511 LKEDYPRIFKSDVIMDLMRVLGCGVEIKDKRIKNLGAFDLDNLNWSKVIICTDADVDGYH 570

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTL+LT  +R +P+LI  G++YI + PLY I   +   +   E    D L      +  
Sbjct: 571 IRTLILTMLYRLVPTLIDEGYVYIAESPLYEINCKEKTYFAYTELEKNDILTEIGDQKCS 630

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                  G    + +         ++   +       +  ++   +  +     +     
Sbjct: 631 INRSKGLGENDPDMMW-----LTTMNPETRRLIKVEPEDVVKMESMFNLLLGNDEAGRKR 685

Query: 633 SLASKLANRLNFI 645
            +A      L+ +
Sbjct: 686 HIAEHGKEYLDQL 698



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 111/309 (35%), Gaps = 35/309 (11%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I+N F+       +      +   ++++++    +    +++      + 
Sbjct: 385 TSYENQTKKAINNRFIQQAMTAFFK--ERLATYLIENKDAANKIMEQVLINKRSRENAEK 442

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYP---NHDKTFIEQAVISGVFNCESDQEINVSLA 635
                K +L+   D A ++ K I          +   +E    +G      D E    + 
Sbjct: 443 TRQSIKTNLQQKTDMANRVQKFIDCRSKDKTRREVYIVEGDSAAGAIRTSRDAEF-QGVM 501

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIFSF----- 685
                 LN + E   + +   +    + V     +   + ++     +  ++        
Sbjct: 502 PVRGKILNCLKEDYPRIFKSDVIMDLMRVLGCGVEIKDKRIKNLGAFDLDNLNWSKVIIC 561

Query: 686 --------------GSKYKRIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTI 726
                          +   R+    I+E Y+ I       + C              D +
Sbjct: 562 TDADVDGYHIRTLILTMLYRLVPTLIDEGYVYIAESPLYEINCKEKTYFAYTELEKNDIL 621

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG +  S+ R KGLGE +   +W TT+NP+TR L++V+  D  + + +F+ L+G++  
Sbjct: 622 TEIGDQKCSINRSKGLGENDPDMMWLTTMNPETRRLIKVEPEDVVKMESMFNLLLGNDEA 681

Query: 787 PRREFIQEN 795
            R+  I E+
Sbjct: 682 GRKRHIAEH 690


>gi|33146008|emb|CAD57648.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 404

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 249/406 (61%), Positives = 316/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|268610222|ref|ZP_06143949.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus flavefaciens
           FD-1]
          Length = 659

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/660 (26%), Positives = 310/660 (46%), Gaps = 28/660 (4%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           + + Y  DSI +LKG D V+KRP++  G  DG  G  H ++EV+ N+IDE+  GY + I 
Sbjct: 3   KKNDYGNDSISMLKGADRVRKRPAVIFGS-DGLDGCEHSVFEVISNSIDEARAGYGNKIV 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGLHGV 123
           +T   +    V D GRG P D +  E     E++   L+AGGK++    +Y+ S GL+G+
Sbjct: 62  ITHFRNNEIEVEDFGRGCPVDYNNNEKRYNWELVYCELYAGGKYDAADDAYEYSLGLNGL 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+      S ++ +++ R+G  Y++ F  G     L         TGT+  + P  ++F+
Sbjct: 122 GLCSTQYSSEFMDVQVIRDGFKYDLHFEKGENVGGLKKEPCKKKQTGTKTRWRPDLEVFT 181

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRHKKP 242
             + + +     L+  + +N ++      +           FY+ GI  +V  +      
Sbjct: 182 DINISDEFFCDILKRQAIVNPNILFVFRSENEAGGFNEQEFFYESGITEYVQEIAGDSAL 241

Query: 243 LMQSPIRIQGS--------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
                   +             + +D+A+ +++   +    + N+   + GG+    ++ 
Sbjct: 242 TTIQHWTAEKKGRDREDKPEYKVKLDVALTFSNK-AKLTEYYHNSSFLEHGGSPAEAVKR 300

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A   QI +Y++   G +K++  V   D  E    V S       +++QTK+ + +  +R 
Sbjct: 301 AFQAQIDAYIKSINGYQKNESKVTYADVEECLILVSSSFSTQTSYANQTKKAITNKFIRE 360

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDIASLPG 412
            +  F+   L  +  E+P EAK I ++VL     R++A R R   ++K  G +D+A++  
Sbjct: 361 AMTEFLRHQLEVYFIENPDEAKRISEQVLLNKRSRESAERTRQNMKKKLTGTIDLANMVE 420

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           K  DC  +D  + E+++VEGDSA GS K  R  E QA++P+RGKILN  +A + K+  S+
Sbjct: 421 KFVDCRTKDVTRREIYIVEGDSALGSVKLARDAEFQAVIPVRGKILNCLKADYGKIFKSE 480

Query: 473 EIGTLITALGTGIGQD--------SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            I  L+  LG G+           +FDIN  R+ KI+I TDADVDG  IRTL+LT  +R 
Sbjct: 481 IITDLLKVLGCGVEVTAKANKELSTFDINNFRWSKIVICTDADVDGFQIRTLILTMLYRL 540

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P+LI  G++YI + PL+ I   +   +   E+  +  L      +         G    
Sbjct: 541 TPTLISEGYVYIAESPLFEINTKEKTYFAYTEQEKQRILDQIGDKKHTIQRSKGLGENEP 600

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           +     +     ++   +       +   E A I  +   +  Q     ++   A+ L+ 
Sbjct: 601 D-----MMSLTTMNPDTRRLIKVTAEDIQESAEIFEMLLGDDLQGRKDYISQYGADYLDL 655



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 107/324 (33%), Gaps = 37/324 (11%)

Query: 504 TDADVDGAHIRTL----LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           T ADV+   I         T +  Q    I N F+               + ++++ +  
Sbjct: 324 TYADVEECLILVSSSFSTQTSYANQTKKAITNKFIREAMTEFLR--HQLEVYFIENPDEA 381

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           +       L++      +      K  L   ID A  ++K +     +  +  I      
Sbjct: 382 KRISEQVLLNKRSRESAERTRQNMKKKLTGTIDLANMVEKFVDCRTKDVTRREIYIVEGD 441

Query: 620 GVFN--CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQ 672
                   +      ++       LN +     K +   I    + V     +  A+  +
Sbjct: 442 SALGSVKLARDAEFQAVIPVRGKILNCLKADYGKIFKSEIITDLLKVLGCGVEVTAKANK 501

Query: 673 EQFVLEGSSIFSF-------------------GSKYKRIFSNRIEENY-----LTILSLI 708
           E    + ++                        +   R+    I E Y       +  + 
Sbjct: 502 ELSTFDINNFRWSKIVICTDADVDGFQIRTLILTMLYRLTPTLISEGYVYIAESPLFEIN 561

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
                            +  IG K  ++QR KGLGE     +  TT+NPDTR L++V   
Sbjct: 562 TKEKTYFAYTEQEKQRILDQIGDKKHTIQRSKGLGENEPDMMSLTTMNPDTRRLIKVTAE 621

Query: 769 DASQADDLFSRLMGDEVEPRREFI 792
           D  ++ ++F  L+GD+++ R+++I
Sbjct: 622 DIQESAEIFEMLLGDDLQGRKDYI 645


>gi|312271584|gb|ADQ56147.1| DNA gyrase subunit B [Vibrio sp. SA0606-03S]
 gi|312271586|gb|ADQ56148.1| DNA gyrase subunit B [Vibrio sp. SA0606-63]
          Length = 373

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 210/375 (56%), Positives = 284/375 (75%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GHCKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT++ F PS
Sbjct: 61  GLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++ FS  +F+YD L  RLRELSFLNS V I LID+R  +  +    Y+GGI+AFV +L+ 
Sbjct: 120 AETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADK-QDHFMYEGGIQAFVQHLNT 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALT
Sbjct: 179 NKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|148470230|gb|ABQ66062.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 204/423 (48%), Positives = 285/423 (67%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L+L I + G ++  ++  G  +
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSETLQLEIHQNGLVHRQTYHKGNPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I      +++TL HR REL+FLN  + I L ++ + 
Sbjct: 61  APLAVVGET-QSRGTTIRFWPDMTIMETDQLSFETLAHRFRELAFLNPVMTIHLKEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE    ++GGI++FV++L+ +KK L       +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREEAFHFEGGIQSFVAFLNENKKILHDVLSFRKQLEDGAQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+ALT+ I  ++ +   +K ++    G+D REG T+V+S+++ 
Sbjct: 178 FANNIHTREGGTHVRGFRTALTKTINEFIREKQLNKGEEVR--GEDVREGLTAVISVRIS 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +ESF+++ L    +E PL AK + +K +  +  R+AAR+A
Sbjct: 236 NPQFEGQTKGKLGSSWVAGAMESFLSEALQDKFDEDPLVAKKVAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G + F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|253826354|gb|ACT36480.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 221/408 (54%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSG LHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGSLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FVYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|33187333|gb|AAP97529.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 405

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/411 (50%), Positives = 284/411 (69%), Gaps = 6/411 (1%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V
Sbjct: 1   VLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +    
Sbjct: 61  IGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--HE 117

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI 
Sbjct: 118 SFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIK 175

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +++S+K+P+P+F  
Sbjct: 176 TPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEG 235

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR+
Sbjct: 236 QTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRK 295

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE
Sbjct: 296 KESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE 355

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 KARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 405


>gi|33186747|emb|CAE12287.1| gyrase B subunit [Vibrio splendidus]
          Length = 405

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 249/405 (61%), Positives = 316/405 (78%), Gaps = 3/405 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G  
Sbjct: 3   GGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVIGDT 62

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y
Sbjct: 63  -DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEY 120

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+D
Sbjct: 121 EGGIQAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRD 180

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG HL+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK
Sbjct: 181 GGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTK 240

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG 
Sbjct: 241 DKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGA 300

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 301 LDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 360

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           FDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 361 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 405


>gi|198042678|gb|ACH81164.1| GyrB [Pseudoalteromonas spongiae]
          Length = 406

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 250/409 (61%), Positives = 315/409 (77%), Gaps = 5/409 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG I+E  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKIHEQIYNMGEPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +    GTE+ F PSS+ FS  +F+YD L  RLRELSFLNS V I L D+R  
Sbjct: 61  APLAVVGESE-TNGTEIRFWPSSETFSDVNFHYDILAKRLRELSFLNSGVSIILADERDE 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVL 274
           +       Y+GGI+AFV +L+ +K P+ Q+          D IS+++AM+WNDG+ E++ 
Sbjct: 120 KK--DHFKYEGGIQAFVEFLNTNKTPVNQNVFHFTSTREEDGISVEVAMQWNDGFQESIY 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNN PQ+DGGTHL+G RSALTR + +Y+EK   +KK+K S  GDD REG T+V+S+K+
Sbjct: 178 CFTNNTPQRDGGTHLAGFRSALTRTLNTYMEKEGFNKKEKSSASGDDAREGLTAVISVKV 237

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VE  + + LS +L E+P +AKI+V K++DA+  R+AAR+
Sbjct: 238 PDPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEYLLENPQDAKIVVTKIIDAARAREAARK 297

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKG +D+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 298 AREMTRRKGAMDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 357

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH IIIM
Sbjct: 358 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHSIIIM 406


>gi|3172533|gb|AAC18605.1| DNA gyrase B [Francisella tularensis]
          Length = 375

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/378 (42%), Positives = 216/378 (57%), Gaps = 12/378 (3%)

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           AGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI ALG GIG + ++ +K
Sbjct: 1   AGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKALGCGIGAEDYNPDK 60

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
            RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+  G+LYI +PPLY + +GK   Y+K
Sbjct: 61  TRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPPLYKVKKGKQETYLK 120

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           DE++L +YL N  L         +  VIS   L N+ +   K  K+IK +   + +  + 
Sbjct: 121 DEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKVIKKYTKTYPEKLLR 179

Query: 615 QAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWHGSINNSDIL--VKR 666
                  +  ES          K+    N  A   E+         G     +I   V  
Sbjct: 180 VMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDIGEDGKENISYGVNH 237

Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
              G    ++++ S   +   +    + + + +       +     K  +    S +D +
Sbjct: 238 YINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAKKEYVDDFESAIDWL 297

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
               RKG  +QRYKGLGEMN  QLWETT++PD R LL+V I DA +AD LF+ LMGDEVE
Sbjct: 298 LKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVEADALFTTLMGDEVE 357

Query: 787 PRREFIQENSLP-SALDI 803
           PRR FI+ N+L    LD+
Sbjct: 358 PRRNFIESNALNVVNLDV 375


>gi|311746902|ref|ZP_07720687.1| putative DNA topoisomerase IV, B subunit [Algoriphagus sp. PR1]
 gi|126578591|gb|EAZ82755.1| putative DNA topoisomerase IV, B subunit [Algoriphagus sp. PR1]
          Length = 631

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 187/673 (27%), Positives = 305/673 (45%), Gaps = 65/673 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M++ +Q   Y  DSI+ L   + ++ RP MYIG     S    G++ ++ EVLDN+IDE 
Sbjct: 1   MANPVQ---YTEDSIRSLDWREHIRLRPGMYIGKLGDGSAQDDGIYVLVKEVLDNSIDEH 57

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSY 114
           + GY   I V +  +    + D GRGIP             VI     ++ GGK++  ++
Sbjct: 58  MMGYGRTIEVKI-SEHKVEIRDYGRGIPLGK----------VIDCVSKINTGGKYDSGAF 106

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + S GL+GVG   VNALS + K++  R+G      F  G+L N   VT  + +  GT+V 
Sbjct: 107 QKSVGLNGVGTKAVNALSDFFKVQAYRDGQTKVAEFEKGVLTNDPPVT-KSSDRNGTKVV 165

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P + IF    F  D L++++   ++LN+ + I+   K+         F   G+   +S
Sbjct: 166 FSPDASIFKNYHFIPDYLENQIWNYAYLNAGLTINFNGKK--------YFSDKGLYDLLS 217

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
                +       I ++G+     I++A+  ++ Y E    F N      GGTHLS  R 
Sbjct: 218 NKVDEESARYP-IIHLKGND----IEVAITHSNQYGEEYYSFVNGQYTTQGGTHLSAFRE 272

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS----- 349
           ++ + +  + +K              D R+   + +++++ +P F SQTK KL S     
Sbjct: 273 SIVKTVREFFKK---------DYDASDIRQSVVASIAVRVQEPVFESQTKTKLGSHSVGP 323

Query: 350 --SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLT 399
               +R+ V  F+   L  +L ++P  A  ++K++L +   R         A  RA+   
Sbjct: 324 DGPTLRTFVNDFIKVELDNYLHKNPAVADALLKRILQSERERKEISGIKKLANERAKKAN 383

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
                L    +    A   E     + LF+ EGDSA GS  + R  + QA+  LRGK LN
Sbjct: 384 LHNKKLRDCRVHYDDAKADEDKKNNTMLFITEGDSASGSITKSRDVQTQAVFSLRGKPLN 443

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
                   +  ++E   L  AL    G     I  LRY KI+I TDADVDG HIR L++T
Sbjct: 444 CYSMTKKVVYENEEFNLLQHALNIEDG-----IENLRYRKIVIATDADVDGMHIRLLIMT 498

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           +F +  P L+ NG L+I+  PL+ +   K   Y   +E  +  +       EI  F    
Sbjct: 499 YFLQFFPDLVKNGHLFILDTPLFRVRNKKETIYCYSDEERQRAIHKLGSKPEITRF-KGL 557

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           G IS  +  NFI + ++++ +I +               +   N +     N+ +   LA
Sbjct: 558 GEISPEEFGNFIGEDIRLEPIILNKETKIADLLGFYMGKNTP-NRQQFIIKNLKIEKDLA 616

Query: 640 NRLNFIAEKSEKS 652
                  E++++ 
Sbjct: 617 LDETKAKEENDEE 629


>gi|294809110|ref|ZP_06767828.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294443664|gb|EFG12413.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 317

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 142/319 (44%), Positives = 201/319 (63%), Gaps = 9/319 (2%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS+      N SY ADSIQ+L+GL+AV+KRP+MYIGD     GLHH++YE++DN+IDE+L
Sbjct: 1   MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY D I VT+N D S TV DNGRGIP D H++E  SA EV MT LHAGGKF++ SYKVS
Sbjct: 60  AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+S VNALS+ +  ++ R G IY+  +  G     +   G   + TGT   F P
Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233
              IF+   ++Y  L  RLREL++LN+ ++ISL D+R        +    + + G+  FV
Sbjct: 179 DGTIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKSEQFYSEEGLREFV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++  ++ L+   I +   +  I I++A+ +N G+ ENV  + NNI   +GGTHL+G R
Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298

Query: 294 SALTRQITSYVEKSFGSKK 312
            ALTR +    + +   K+
Sbjct: 299 RALTRTLKKSPKTARCWKR 317


>gi|253826352|gb|ACT36479.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 221/408 (54%), Positives = 300/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGEVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  +++ L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEVVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|159146582|gb|ABW90735.1| DNA gyrase beta subunit [Vibrio rotiferianus]
          Length = 401

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 240/403 (59%), Positives = 315/403 (78%), Gaps = 3/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  T-DQTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|261265511|gb|ACX55940.1| DNA gyrase subunit B [Paenibacillus sp. YC36]
          Length = 404

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 227/408 (55%), Positives = 296/408 (72%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  + +++KREG I+E  F  G+    L VTG
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKVIVQVKREGKIHEQEFRCGVPQYDLRVTG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              ++TGT+VTF P  +IF+    ++YDTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ET-DETGTQVTFWPDEEIFTETTEYDYDTLQSRIRELAFLNRGIEIFLSDERTD--VSQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV YL+R ++ L Q PI ++G +DNI +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEYLNRTREALHQPPIFVEGDKDNIHVEVALQYNDSYSENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K    ++ GDD REG T+++S+K+P+P+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNDYARKHNVIKDSDANLSGDDVREGMTAIISVKIPEPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   +    ++EE+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKFQEFMEENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+L + EI  +ITALGTGIG D FDI K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILGNAEIRAIITALGTGIG-DGFDITKARYHKIIIMTDADVDG 404


>gi|190341296|gb|ACE74725.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 222/408 (54%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L+++ KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQDKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|209863975|gb|ACI88905.1| GyrB [Leptospirillum ferriphilum]
          Length = 418

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 211/423 (49%), Positives = 287/423 (67%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F++DTL HR REL+FLN  + I L D+ + 
Sbjct: 61  APLAVFGETT-QRGTIIRFWPDMTIMETDQFSFDTLAHRFRELAFLNPVLTIHLKDEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GG+++FVS+L+ +KK L +     +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFEGGVQSFVSFLNENKKTLHEVLFFRKTLEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P
Sbjct: 178 FANNIHTREGGTHVRGFRTAITKTIDRFIREKQLNKGEEVR--GEDVREGLTGIISVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A
Sbjct: 236 GPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|42541265|gb|AAS19512.1| DNA gyrase subunit B [Aliivibrio fischeri]
          Length = 403

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 245/405 (60%), Positives = 315/405 (77%), Gaps = 3/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G  + PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGK 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS + F+   F Y+ L  RLRELSFLNS V I L D R  E +     
Sbjct: 61  T-DTTGTKIRFWPSEETFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVQHLNRNKTPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G RSALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDIAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           RFDKMLSSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 RFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|86651915|gb|ABD14445.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 401

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 240/403 (59%), Positives = 314/403 (77%), Gaps = 3/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             ++TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     
Sbjct: 61  T-DETGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMT A
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTYA 401


>gi|42541271|gb|AAS19515.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|61661896|gb|AAX51603.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661900|gb|AAX51605.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793370|gb|ABR12749.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793382|gb|ABR12755.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 403

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 242/405 (59%), Positives = 315/405 (77%), Gaps = 4/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++   
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 MYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|61661946|gb|AAX51628.1| DNA gyrase beta subunit [Photobacterium iliopiscarium]
 gi|61661948|gb|AAX51629.1| DNA gyrase beta subunit [Photobacterium iliopiscarium]
          Length = 402

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 239/404 (59%), Positives = 313/404 (77%), Gaps = 4/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ NG+   PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCNGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTTNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|110612703|gb|ABG78314.1| GyrB [uncultured bacterium]
          Length = 408

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 247/411 (60%), Positives = 306/411 (74%), Gaps = 3/411 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS  L+L ++  G +YE  +  G    P+ VTG+  
Sbjct: 1   GKFDNSSYKVSGGLHGVGVSVVNALSETLELTVRINGQVYEQLYKLGEPQAPIKVTGTTS 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            + GTE+ F PS  IF+  +F+YD L  RLRELSFLN  VQI L D+R  +    +  Y+
Sbjct: 61  -ERGTEIRFKPSPTIFTQLEFHYDILAKRLRELSFLNQGVQIELFDERDGKK--DSFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+R K  +  +            ++LAM+WND Y E + CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVQYLNRKKTGIHPTVFYFSEDVKGTIVELAMQWNDSYQETIFCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R ALTR + +Y+EK   +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRGALTRTLNNYIEKEGLAKKFKISTTGDDAREGLTAVLSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR+VVE  V +  + +L E P EAK I+ K+++A+  R+AAR+AR++TRRK  LD
Sbjct: 238 LVSSEVRAVVEGTVAEHFNNFLLEKPQEAKAIITKMVEAARAREAARKAREMTRRKSALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +A LPGKLADC ERDP   E+ +VEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+ARFD
Sbjct: 298 VAGLPGKLADCQERDPALCEILIVEGDSAGGSAKQGRSRKTQAILPLRGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           KMLSSQE+G LITALG GIG   F+ +KLRYHKIII+TDADVDG+HIRTLL
Sbjct: 358 KMLSSQEVGVLITALGCGIGSQEFNADKLRYHKIIIITDADVDGSHIRTLL 408


>gi|159146590|gb|ABW90739.1| DNA gyrase beta subunit [Vibrio chagasii]
          Length = 401

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 244/403 (60%), Positives = 311/403 (77%), Gaps = 3/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + FS   F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  T-DQTGTEIRFWPSEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVDHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VE  + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|33187341|gb|AAP97533.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 405

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 207/411 (50%), Positives = 284/411 (69%), Gaps = 6/411 (1%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V
Sbjct: 1   VLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +    
Sbjct: 61  IGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--HE 117

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI 
Sbjct: 118 SFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIK 175

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +V+S+K+P+P+F  
Sbjct: 176 TPDGGTHETGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAVVSVKVPEPQFEG 235

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR+
Sbjct: 236 QTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALIAARGREAAKKARELTRK 295

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE
Sbjct: 296 KESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE 355

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 KARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 405


>gi|198250535|gb|ACH85249.1| DNA gyrase subunit B [Paenibacillus edaphicus]
          Length = 406

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 221/410 (53%), Positives = 296/410 (72%), Gaps = 7/410 (1%)

Query: 104 HAGGKFNQKS--YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           HAGGKF      YKVSGGLHGVG+SVVNALS  L +++KREG +++  F  G+    L +
Sbjct: 1   HAGGKFGGDESGYKVSGGLHGVGISVVNALSKKLVVQVKREGKVHQQEFSCGVPQYDLKI 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G    +TGT+ TF P  +IF     +++DTLQ R+REL+FLN  ++I L D+RS     
Sbjct: 61  IGETE-ETGTQATFWPDEEIFKETTEYDFDTLQSRIRELAFLNKGIEIVLTDERSDVSNS 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV +L+R+++PL + PI ++G +DNI++++A+++ND Y EN+  F NNI
Sbjct: 120 --FMYEGGIVSFVEHLNRNREPLHEPPIFVEGEKDNITVEVALQYNDTYAENIYSFANNI 177

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH SG +SALTR +  Y  K    K +  ++ GDD REG T+++S+K+P+P+F 
Sbjct: 178 NTHEGGTHESGFKSALTRILNEYARKYNTIKDNDANLSGDDVREGLTAIISVKIPEPQFE 237

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SEVR +VES  +D L  +L E+P  AK IV+K + A   R+AAR+AR+LTR
Sbjct: 238 GQTKTKLGNSEVRGIVESLFSDKLEEFLVENPSVAKKIVEKGVQAQRAREAARKARELTR 297

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 298 RKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 357

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+LS+ EI  +ITALGTGIG D F+I K RYHK+IIMTDADVDG
Sbjct: 358 EKARLDKILSNAEIRAIITALGTGIG-DDFEITKARYHKVIIMTDADVDG 406


>gi|239735455|dbj|BAH70494.1| gyrase B subunit [Cardinium endosymbiont of Ixodes scapularis]
          Length = 478

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 224/468 (47%), Positives = 314/468 (67%), Gaps = 9/468 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           + +YK+SGGLHGVGVS VNALS+ L++ + R+G IY+ ++  GI   P+   G      G
Sbjct: 1   KDTYKISGGLHGVGVSCVNALSTHLEVTVYRDGKIYKQAYAQGIPSYPVKAVG-TTELRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYK 226
           T V F+P S IF+   +N  T+  RL+EL++LN  + + L D+R       P +     +
Sbjct: 60  TTVHFVPDSTIFTTTIYNLHTIVGRLQELAYLNVGLTMELEDRRELDEQGNPFQQKFHSQ 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+  F ++LD +K  +M +PI ++G ++N+ + +AM +N GY E V+ + NNI   +GG
Sbjct: 120 GGLLEFAAHLDSNKVSIMPTPILVEGEKNNVVVQVAMTYNTGYSETVVSYVNNIHTIEGG 179

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H++G + ALTR + +Y +KS   +K K  +IGDD REG T+V+S+K+ +P+F  QTK K
Sbjct: 180 MHVTGFKRALTRTLKNYSDKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  VES V + L  +LEEHP EAK+I+ KV+ A+  R AAR+AR++ +RK VL 
Sbjct: 240 LGNAEVQGAVESCVAEVLHYYLEEHPKEAKLIINKVIVAAQARQAARKAREMVQRKNVLM 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            +SLPGKLADCSERDP   ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  
Sbjct: 300 SSSLPGKLADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQAY 359

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           K+  ++++  +ITALG  I     D     +KLRYHKI+IMTDADVDG+HIRTL+LTFFF
Sbjct: 360 KIYDNEQVRNMITALGVAIETGESDQASNLDKLRYHKIVIMTDADVDGSHIRTLILTFFF 419

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           R M  +I  G+LYI  PPLY + R K   Y   +   E Y+   SL +
Sbjct: 420 RYMRQIIEKGYLYIASPPLYLVKRDKEAHYCWTDAEKEGYVAQLSLKD 467


>gi|198042700|gb|ACH81175.1| GyrB [Pseudoalteromonas sp. UST050418-030]
          Length = 404

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 243/406 (59%), Positives = 316/406 (77%), Gaps = 6/406 (1%)

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D P
Sbjct: 1   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L V G + + TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E 
Sbjct: 61  LAVIGDS-DTTGTELRFWPSAETFTKLDFHYDILAKRLRELSFLNSGVSIILNDER-EEN 118

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCF 276
           +     Y+GGI+AFV Y++R+K P+ +        R    IS++++M+WND Y EN+ CF
Sbjct: 119 KSDHFKYEGGIQAFVEYINRNKTPIHKGVFHFTHERVEDGISVEVSMQWNDAYQENIYCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKM 334
           TNNIPQ+DGGTHL+G RSALTR + +++EK   +KK K   +  GDD REG T+V+S+K+
Sbjct: 179 TNNIPQRDGGTHLAGFRSALTRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DAS  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 AREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+I
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRI 404


>gi|160933740|ref|ZP_02081128.1| hypothetical protein CLOLEP_02601 [Clostridium leptum DSM 753]
 gi|156867617|gb|EDO60989.1| hypothetical protein CLOLEP_02601 [Clostridium leptum DSM 753]
          Length = 662

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 193/642 (30%), Positives = 310/642 (48%), Gaps = 26/642 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+       Y  +SI  LKG D V+KRP++  G  DG  G  H I+E+L N+IDE+ EG+
Sbjct: 1   MAKKTV--EYGNESISSLKGADRVRKRPAVIFGS-DGIEGCQHSIFEILSNSIDEAREGF 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ---KSYKVS 117
              I +T   DGS  V D+GRGIP D +K E     E++   L+AGGK+N    +SY+ S
Sbjct: 58  GREIVLTRFEDGSIEVEDHGRGIPVDYNKNEDRYNWELVFCELYAGGKYNNASAESYEYS 117

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+G+G+      S ++ + I+R+G  Y + F +G     L     A  DTG+++ + P
Sbjct: 118 LGLNGLGLCSTQYASEYMDVDIRRDGLRYTLHFEHGENVGGLHKEPYAKKDTGSKIKWKP 177

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS--- 234
              +F+  D         ++  + +N+ V+    ++      E    Y+ GI   V    
Sbjct: 178 DLQVFTDIDVPVAYFLDMIKRQAIVNAGVKFVFRNQAGRSFEETVFNYQDGITDHVKELA 237

Query: 235 -----YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                   +  +   +   R         I++A+ +++        + N+   + GG   
Sbjct: 238 GEDALTPVQSWQAEKKVRDRADKPEYKCKINVALTFSNKISVA-EYYHNSSWLEHGGAPE 296

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
             +R+A   QI SY++++    K++  +   D  +    V+S       + +QTK+ + +
Sbjct: 297 KAVRNAFVYQIDSYLKQTGKYNKNESKITFADVEDCLVIVISSFSSVTSYENQTKKAITN 356

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDI 407
             ++  +   +   L  +  E+PL+A  I  +VL     R+ A + R   ++K    +DI
Sbjct: 357 KGIQEAMVEMLRHQLEIYFIENPLDADKIAGQVLINKRSREDAEKTRLNLKKKLTSNMDI 416

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            S   K  DC  +D    ELF+VEGDSA G+ KQ R  + QAI+P+RGKILN  +A +DK
Sbjct: 417 TSRVAKFVDCRSKDVNLRELFIVEGDSALGACKQARDPDFQAIIPIRGKILNCLKADYDK 476

Query: 468 MLSSQEIGTLITALGTGI--------GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           +  +  I  LI  LG G+           SFD+N+LR+ K+I+ TDADVDG  IRTLLLT
Sbjct: 477 IFKNDIITDLIKVLGCGVQVKSKANKELASFDLNQLRWSKVILCTDADVDGFQIRTLLLT 536

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
             +R  P+LI  G ++I + PLY IT      +   E   + +L              SK
Sbjct: 537 MIYRLTPALIEAGKVFIAESPLYEITSKTDTYFAYTEAEKQKFLDQLEAEGGRFTIQRSK 596

Query: 580 GVISKN-DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
           G+     D+ N      +  +LIK    + +KT     ++ G
Sbjct: 597 GLGENEPDMMNLTTMNPQTRRLIKVMPTDMEKTVEMFDLLLG 638



 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 111/323 (34%), Gaps = 41/323 (12%)

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           +T +  Q    I N  +      +        + ++++    +       +++      +
Sbjct: 343 VTSYENQTKKAITNKGIQEAMVEMLR--HQLEIYFIENPLDADKIAGQVLINKRSREDAE 400

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLA 635
              +  K  L + +D   ++ K +     + +   +             ++      ++ 
Sbjct: 401 KTRLNLKKKLTSNMDITSRVAKFVDCRSKDVNLRELFIVEGDSALGACKQARDPDFQAII 460

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIF------- 683
                 LN +    +K +   I    I V     +  ++  +E    + + +        
Sbjct: 461 PIRGKILNCLKADYDKIFKNDIITDLIKVLGCGVQVKSKANKELASFDLNQLRWSKVILC 520

Query: 684 -SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC-------------------SLL 723
                   +I +  +   Y    +LI  G       P                      L
Sbjct: 521 TDADVDGFQIRTLLLTMIYRLTPALIEAGKVFIAESPLYEITSKTDTYFAYTEAEKQKFL 580

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           D + + G +  ++QR KGLGE     +  TT+NP TR L++V  TD  +  ++F  L+GD
Sbjct: 581 DQLEAEGGR-FTIQRSKGLGENEPDMMNLTTMNPQTRRLIKVMPTDMEKTVEMFDLLLGD 639

Query: 784 EVEPRREFIQENS---LPSALDI 803
            +  R+++I EN    L  A D+
Sbjct: 640 NLSGRKDYIAENGHLYLDVA-DV 661


>gi|267850652|gb|ACY82401.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 218/408 (53%), Positives = 297/408 (72%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ  +REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSHIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGK+LNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKVLNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR D +L + EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDMILPNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|261265509|gb|ACX55939.1| DNA gyrase subunit B [Paenibacillus sp. YC28]
          Length = 404

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 223/408 (54%), Positives = 296/408 (72%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  + +++KREG I+E  F  G+    L VTG
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKVIVQVKREGKIHEQEFRCGVPQYDLRVTG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
               +TGT+VTF P  +IF+    ++YDTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ETE-ETGTQVTFWPDEEIFTETTEYDYDTLQSRIRELAFLNRGIEIVLSDERTD--VSHT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV YL+R ++ L + PI ++G +D I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FMYEGGIISFVEYLNRTREALHEPPIFVEGDKDQIHVEVALQYNDSYSENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+P+P+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNDYARKHNVLKESDSNLSGDDVREGLTAIISVKIPEPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   +    +++E+P  AK +V+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKFQEFMDENPAIAKKLVEKGIQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+L + EI  +ITALGTGIG D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILGNAEIRAIITALGTGIG-DDFDISKARYHKIIIMTDADVDG 404


>gi|148536444|gb|ABQ85774.1| DNA gyrase subunit B [Vibrio splendidus]
          Length = 403

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 248/405 (61%), Positives = 314/405 (77%), Gaps = 3/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|6939886|dbj|BAA90677.1| DNA gyrase subunit B [Empedobacter brevis]
          Length = 479

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 226/471 (47%), Positives = 305/471 (64%), Gaps = 10/471 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ L   + + G  Y   +  G     +   G      
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSNHLSAEVFKNGKQYIQEYSKGKPLYDVKEVG-TTEKN 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT VTF P   IF     +NY TL +RLREL+FLN  + I+LID+R  +        T  
Sbjct: 60  GTTVTFTPDDTIFQEVQTYNYQTLANRLRELAFLNKGINITLIDEREKDADGNSITETFH 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ FV ++D  ++ +M   I ++G RD I +++AMR+N  Y+ENV  + NNI   +
Sbjct: 120 SEEGLKEFVEFIDGSRESIMDKVIFMEGERDGIPVEVAMRYNTSYNENVHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R ALTR +  Y E++F   K+K  ++GDD REG T+V+S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRALTRTLKKYAEENFNLAKEKVEIVGDDFREGLTAVISVKVMEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEV   V+  V + L+ +LEE+P EAK IV KV+ A+  R AA++AR++ +RK  
Sbjct: 240 TKLGNSEVSPAVDKIVAEMLTNFLEENPTEAKQIVDKVILAAKARQAAKKAREMVQRKNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  + LPGKLADCS R P++SELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A 
Sbjct: 300 MGGSGLPGKLADCSSRKPEESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+L ++EI  + TALG  IG +      +I+KLRYHK++IMTDADVDG+HI TL+LTF
Sbjct: 360 AHKVLDNEEIKNIYTALGVTIGTEEDSKALNISKLRYHKVVIMTDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           FFR M  LI  G +YI  PPLY I +G   +Y  +E+  E      S    
Sbjct: 420 FFRYMKELIEQGHIYIATPPLYLIKKGAKAEYAWNEKERERLTAEFSADGS 470


>gi|198250531|gb|ACH85247.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 220/408 (53%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGV VVNALS  L++++KREG +++  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVPVVNALSKKLEVQVKREGKVHQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|61661872|gb|AAX51591.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661874|gb|AAX51592.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661878|gb|AAX51594.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661922|gb|AAX51616.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 402

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 238/404 (58%), Positives = 313/404 (77%), Gaps = 4/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|148762485|dbj|BAF63944.1| DNA topoisomerase IV subunit B [Bacillus licheniformis]
          Length = 406

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 181/406 (44%), Positives = 260/406 (64%), Gaps = 10/406 (2%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH++YE++DN++DE L G+ + I V ++ D S +V D GRG+PT +H + G    E+I
Sbjct: 6   GLHHLVYEIVDNSVDEVLAGHGNHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEII 64

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNP 158
           +T LHAGGKF Q  YK SGGLHGVG SVVNALS WL + I+R+GN+Y   F N G     
Sbjct: 65  LTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGNVYRQRFENGGKPVTS 124

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G+    TGT + F P   +FS   FN++TL  RLRE +FL   ++I LID+R  + 
Sbjct: 125 LDKIGTTK-KTGTLIHFKPDPTMFSTTTFNFETLSERLRESAFLLKGLKIELIDER--DQ 181

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
            + T  Y+ GIEAFV+     +K  +   +  +G  + I +D A ++NDGY EN+L F N
Sbjct: 182 TKETFLYENGIEAFVA-YLNEEKDALSEVVSFEGEHNGIEVDFAFQFNDGYSENILSFVN 240

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP- 337
           N+  KDGGTH SG ++A+TR    Y  K    K+  +++ G D REG ++++S+++P+  
Sbjct: 241 NVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEEL 300

Query: 338 -RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
            +F   TK KL +SE RS V++ V++ L+ +LEE+   A ++VKK + AS  R+AAR+AR
Sbjct: 301 LQFEGLTKGKLGTSEARSAVDAIVSEQLAYFLEENRETATLLVKKAIKASQAREAARKAR 360

Query: 397 D--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           +   + +K     A+L GKL     R+P K+EL+LVEGDSAGGSAK
Sbjct: 361 EEARSGKKRKKSEATLSGKLTPAQSRNPSKNELYLVEGDSAGGSAK 406


>gi|55469459|gb|AAV52388.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|61661858|gb|AAX51584.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661862|gb|AAX51586.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661864|gb|AAX51587.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661888|gb|AAX51599.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661890|gb|AAX51600.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661892|gb|AAX51601.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661894|gb|AAX51602.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661898|gb|AAX51604.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661952|gb|AAX51631.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793358|gb|ABR12743.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793362|gb|ABR12745.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793364|gb|ABR12746.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793368|gb|ABR12748.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793372|gb|ABR12750.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793374|gb|ABR12751.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793378|gb|ABR12753.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793380|gb|ABR12754.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793392|gb|ABR12760.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793398|gb|ABR12763.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 403

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 242/405 (59%), Positives = 315/405 (77%), Gaps = 4/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++   
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 MYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|148971327|gb|ABR20201.1| DNA gyrase subunit B [uncultured bacterium]
 gi|148971357|gb|ABR20216.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 426

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 258/428 (60%), Positives = 320/428 (74%), Gaps = 9/428 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+Q SYKVSGGLHGVG +VVNALS W+ +RI R+G  + + F NG   
Sbjct: 1   EVIMTVLHAGGKFDQSSYKVSGGLHGVGAAVVNALSEWMDVRIWRDGTEFFIRFENGNPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +   TGTEV F PS   F+  +F++   + RLREL+FLNS ++ISL D+R  
Sbjct: 61  APLRVVGPSERPTGTEVVFKPSPATFTRTEFDFAVFERRLRELAFLNSGLEISLRDERHA 120

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVL 274
            P +    YKGG+  FV++LDR K  L+  PI          I I+ A+ WND +HE +L
Sbjct: 121 TPIQSRFCYKGGLVEFVAWLDRSKSALISPPITASREDKGSGIKIEFALSWNDSFHETML 180

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNI Q+DGGTHL+G RSALTR ++ Y +          S++G+D REG T+VLS+K+
Sbjct: 181 CFTNNIIQRDGGTHLAGFRSALTRVVSKYADAIGKKD--NVSLVGEDMREGLTAVLSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+ +V++ + D L  W E HP EAK +V+KV+DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVQPIVQAAIADVLDHWFETHPKEAKALVQKVIDAAAAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARDLTRRKGVLD++SLPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R  QAILPL+
Sbjct: 299 ARDLTRRKGVLDVSSLPGKLADCQERDPSKSEIFIVEGDSAGGSAKQGRDRRTQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVD 509
           GKILNVER+RFD+MLSS EIGTLITALGTGIG        FDI K+RYH+++IMTDADVD
Sbjct: 359 GKILNVERSRFDRMLSSAEIGTLITALGTGIGPADPEQGGFDIGKIRYHRVVIMTDADVD 418

Query: 510 GAHIRTLL 517
           G+HIRTLL
Sbjct: 419 GSHIRTLL 426


>gi|33145998|emb|CAD57639.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 404

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 248/406 (61%), Positives = 314/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|148971433|gb|ABR20254.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 211/425 (49%), Positives = 282/425 (66%), Gaps = 8/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVG SVVNALS   ++ + R+G +Y M F  G+  
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGASVVNALSECTEVEVCRDGKVYAMEFERGVKT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           + L   G     TGT+VTF P + IF    F+YD +  R REL++LN  +   + D+R+ 
Sbjct: 61  SELKTIGK-RQKTGTKVTFKPDAQIFPDITFDYDRVVVRCRELAYLNEGLAFYIEDERTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ----GSRDNISIDLAMRWNDGYHEN 272
           +       Y  GI  FV  L+  K+ +    I ++    G  + +S+ +AM++NDGY E+
Sbjct: 120 KK--DEFKYTRGIIQFVKQLNEGKEVIHNQVIYLEREEPGKDNPMSVQVAMQYNDGYAES 177

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  F NNI    GGTHLSG  +ALTR +  Y + +   K +K    GDD REG ++++SI
Sbjct: 178 LHSFANNINTPGGGTHLSGFETALTRTLNFYAKSNNLIKDEKEMPNGDDLREGLSAIVSI 237

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P+P+F  QTK+KL + EV   V + VN+ L  WLEEHP +AK I++K L A   R+AA
Sbjct: 238 KVPNPQFEGQTKDKLGNGEVEGFVANAVNETLGTWLEEHPADAKRIIQKGLLARQAREAA 297

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LT RKG L    LPGKLADCS RD + +EL++VEG SAGG+AK GR R  QAILP
Sbjct: 298 RKARELT-RKGALSSGGLPGKLADCSSRDMESTELYIVEGRSAGGTAKAGRDRVFQAILP 356

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           ++GKILNVE+AR DKMLS +EI T++ AL  G+G    D++KLR  K++IMTDADVDG+H
Sbjct: 357 IKGKILNVEKARVDKMLSHEEIRTIVQALACGLGASDMDLSKLRCGKLVIMTDADVDGSH 416

Query: 513 IRTLL 517
           IRTLL
Sbjct: 417 IRTLL 421


>gi|33186741|emb|CAE12284.1| gyrase B subunit [Vibrio tasmaniensis]
          Length = 404

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 250/406 (61%), Positives = 316/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKFN  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFNDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F  S + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWLSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|229815925|ref|ZP_04446248.1| hypothetical protein COLINT_02980 [Collinsella intestinalis DSM
           13280]
 gi|229808478|gb|EEP44257.1| hypothetical protein COLINT_02980 [Collinsella intestinalis DSM
           13280]
          Length = 701

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/673 (26%), Positives = 307/673 (45%), Gaps = 39/673 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N  N  Y  DSI+ LK  + V+ RP++  G  DG  G  H  +E+L NA+DE+ +GY
Sbjct: 37  MAKNTAN--YGNDSIRQLKDEERVRLRPAVIFGS-DGLDGCAHAAFEILSNAVDEARQGY 93

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
             +IT+T   DGS  V DNGRG P D +  E     E++   L+AGGK+N      Y  S
Sbjct: 94  GKLITLTAFRDGSIQVEDNGRGCPLDWNPSEKRFNWELVFCELYAGGKYNNNEGGDYDFS 153

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF----INGILDNPLVVTGSAGNDTGTEV 173
            G +G+G       S ++ + + R+GN Y + F    + G     L +  +  + TGT +
Sbjct: 154 LGTNGLGSCATQYASEYMDVTVWRDGNKYSLHFKKGKVVGAKKKALEIEPTDEHRTGTTI 213

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK-RSPEPREITMFYKGGIEAF 232
            + P  ++F+     +D  +  +R  + +N++V   L  +    E  E    Y  GIE +
Sbjct: 214 KWRPDLEVFTSISIPHDWYRETMRRQAVVNANVTFRLCIEGDDGEFTEEDFCYPKGIEDY 273

Query: 233 VSYLDRHKKPLMQSPIRIQGSR----------DNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           V          +  P  I+  R           N+ I   + ++  +      + N+   
Sbjct: 274 VLEKVGA--DYLTEPFFIEAERRGRDREDLPDYNVKITACLCFSRTFQMQ-EYYHNSSWL 330

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           ++GG+     RSALT  I +Y+++     K++ S+   D ++    V +       + +Q
Sbjct: 331 ENGGSPEKAARSALTSAIDAYIKQQGKYNKNESSIKWQDVQDCLVLVTNCFSTQTSYENQ 390

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTR 400
           TK+ + +  ++  + +F  + L+ +L E+   A  I+++VL     R+ A + R    T 
Sbjct: 391 TKKAINNRFIQQAMTAFFKERLATYLIENKDAANKIMEQVLINKRSRENAEKTRQSIKTN 450

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
            +   D+A+   K  DC  +D  + E+++VEGDSA G+ +  R  E Q ++P+RGKILN 
Sbjct: 451 LQQKTDMANRVQKFIDCRSKDKTRREVYIVEGDSAAGAIRTSRDAEFQGVMPVRGKILNC 510

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDS--------FDINKLRYHKIIIMTDADVDGAH 512
            +  + ++  S  I  L+  LG G+            FD++ L + K+II TDADVDG H
Sbjct: 511 LKEDYPRIFKSDIIMDLMRVLGCGVEIKDKRIKNLGAFDLDNLNWSKVIICTDADVDGYH 570

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTL+LT  +R +P+LI  G++YI + PLY I   +   +   E      L      +  
Sbjct: 571 IRTLILTMLYRLVPTLIDEGYVYIAESPLYEINCKEKTYFAYTELEKNAILTEIGDQKCS 630

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                  G    + +         ++   +       +   +   +  +     +     
Sbjct: 631 INRSKGLGENDPDMMW-----LTTMNPETRRLIKVEPEDVAKMESMFNLLLGNDEAGRKR 685

Query: 633 SLASKLANRLNFI 645
            +A      L+ +
Sbjct: 686 HIAEHGKEYLDQL 698



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 111/309 (35%), Gaps = 35/309 (11%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I+N F+       +      +   ++++++    +    +++      + 
Sbjct: 385 TSYENQTKKAINNRFIQQAMTAFFK--ERLATYLIENKDAANKIMEQVLINKRSRENAEK 442

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYP---NHDKTFIEQAVISGVFNCESDQEINVSLA 635
                K +L+   D A ++ K I          +   +E    +G      D E    + 
Sbjct: 443 TRQSIKTNLQQKTDMANRVQKFIDCRSKDKTRREVYIVEGDSAAGAIRTSRDAEF-QGVM 501

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIFSF----- 685
                 LN + E   + +   I    + V     +   + ++     +  ++        
Sbjct: 502 PVRGKILNCLKEDYPRIFKSDIIMDLMRVLGCGVEIKDKRIKNLGAFDLDNLNWSKVIIC 561

Query: 686 --------------GSKYKRIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTI 726
                          +   R+    I+E Y+ I       + C                +
Sbjct: 562 TDADVDGYHIRTLILTMLYRLVPTLIDEGYVYIAESPLYEINCKEKTYFAYTELEKNAIL 621

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG +  S+ R KGLGE +   +W TT+NP+TR L++V+  D ++ + +F+ L+G++  
Sbjct: 622 TEIGDQKCSINRSKGLGENDPDMMWLTTMNPETRRLIKVEPEDVAKMESMFNLLLGNDEA 681

Query: 787 PRREFIQEN 795
            R+  I E+
Sbjct: 682 GRKRHIAEH 690


>gi|148470270|gb|ABQ66082.1| gyrase b [uncultured bacterium]
          Length = 426

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 254/421 (60%), Positives = 312/421 (74%), Gaps = 9/421 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+Q SYKVSGGLHGVG +VVNALS W+ +RI R+G  Y + F NG   
Sbjct: 1   EVIMTVLHAGGKFDQSSYKVSGGLHGVGAAVVNALSEWMDVRIWRDGTEYFIRFENGNAV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V   +   TGTEV F PS   F+  +F++   + RLREL+FLNS ++ISL D+R  
Sbjct: 61  APLHVVAPSEQPTGTEVVFKPSPATFTRTEFDFTVFERRLRELAFLNSGLKISLRDERHA 120

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVL 274
            P +    YKGG+  FV++LDR K  L+  PI          I I+ A+ WND +HE +L
Sbjct: 121 TPIQSRFCYKGGLVEFVAWLDRSKSALISPPITALHEDKGSGIKIEFALSWNDSFHETML 180

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNI Q+DGGTHL+G RSALTR I+ Y +          S++G+D REG T+VLS+K+
Sbjct: 181 CFTNNIIQRDGGTHLAGFRSALTRVISKYADAIGKKD--NVSLVGEDMREGLTAVLSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+ +V++ V D L  W E HP EAK +V+KV+DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVQPIVQAAVTDVLDHWFETHPKEAKALVQKVIDAATAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARDLTRRKGVLD++SLPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R  QAILPL+
Sbjct: 299 ARDLTRRKGVLDVSSLPGKLADCQERDPSKSEIFIVEGDSAGGSAKQGRDRRTQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVD 509
           GKILNVER+RFD+MLSS EIGTLITALGTGIG        FDI K+RYH+++IMTDADVD
Sbjct: 359 GKILNVERSRFDRMLSSAEIGTLITALGTGIGPTDPEQGGFDIGKIRYHRVVIMTDADVD 418

Query: 510 G 510
           G
Sbjct: 419 G 419


>gi|84310480|gb|ABC55388.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 409

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 206/410 (50%), Positives = 292/410 (71%), Gaps = 3/410 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+   YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    + V
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPMADVEV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G   + TGT   F+P  +IF+    ++YD L  R+REL+FL   V+I++ DKR  + ++
Sbjct: 61  IGET-DTTGTITHFVPDPEIFTETTVYDYDLLSSRVRELAFLTKGVKITIEDKREEKEQK 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+++V YL+R K+ + + PI I+G++D I+++ A+++ND Y  N+  F NNI
Sbjct: 120 NEYCYEGGIKSYVEYLNRSKEVVHEEPIYIEGTKDGITVEAALQYNDSYTSNIYSFANNI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +G ++ LTR I  Y  K    K+   ++ GDD REG T+++SIK PDP+F 
Sbjct: 180 NTYEGGTHEAGFKTGLTRVINDYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE R++ ++  ++ L  +L E+P  A+ ++ K L A+  R AA++AR+LTR
Sbjct: 240 GQTKTKLGNSEARTITDALFSEALETFLFENPDSARKVIDKGLMAARARMAAKKARELTR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+I++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 300 RKSALEISNLPGKLADCSSKDPGISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDG
Sbjct: 360 EKARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDG 408


>gi|61661876|gb|AAX51593.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661880|gb|AAX51595.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661924|gb|AAX51617.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661926|gb|AAX51618.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661928|gb|AAX51619.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661930|gb|AAX51620.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661932|gb|AAX51621.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 402

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 238/404 (58%), Positives = 313/404 (77%), Gaps = 4/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|30580459|sp|Q9FAX1|GYRB_FLEEL RecName: Full=DNA gyrase subunit B
 gi|10039315|dbj|BAB13318.1| DNA gyrase B subunit [Flexibacter elegans]
          Length = 478

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 219/465 (47%), Positives = 315/465 (67%), Gaps = 9/465 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALSS L   + REG +++  +  G     + V G + + T
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSSLLVATVHREGKVFQQKYSTGNPQGAVEVVGQS-DRT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFY 225
           GT + F P + IF+  ++ Y+T+  RLRELS+LN  ++++L D R  + +        F 
Sbjct: 60  GTTIYFEPDATIFATTEYKYETVSKRLRELSYLNKGIRLTLTDLRETDEQGRHLYEEFFS 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG++ FV +LD  ++PL+ +PI ++ +  +I +++A+ +N+ Y ENV  + NNI   +G
Sbjct: 120 EGGLKEFVEHLDSTRQPLLPAPIHVEKTDGDIPVEVALIYNNSYSENVFSYVNNINTHEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH+SG R ALTR + SY +KS   +K K  + GDD REG T+V+SIK+ +P+F  QTK 
Sbjct: 180 GTHVSGFRRALTRTLKSYADKSGMLEKAKVEITGDDFREGLTAVISIKVAEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL +S+    V++ V++ L  +LEE+P EAK+I++KV+ A+  R AAR+AR++ +RK V+
Sbjct: 240 KLGNSDAIGAVDNAVSEILGYYLEENPREAKLIIQKVILAAQARQAARKAREMVQRKNVM 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
              SLPGKLADCS+ +P++ EL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A+ 
Sbjct: 300 GGTSLPGKLADCSDTNPERCELYLVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKAQE 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            K+  ++EI  +ITA+G   G +         KLRYHKIIIMTDADVDG+HIRTL+LTFF
Sbjct: 360 YKIYDNEEIKNMITAMGVTFGTEEDSKALNLTKLRYHKIIIMTDADVDGSHIRTLILTFF 419

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           FR M  LI  G+LY+  PPLY + +GK  +Y   +   +  +   
Sbjct: 420 FRYMRELIEQGYLYVALPPLYIVKKGKEERYAWSDAERDAIIREI 464


>gi|13358824|dbj|BAB33158.1| DNA gyrase B subunit [Prevotella oralis]
          Length = 484

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 210/475 (44%), Positives = 299/475 (62%), Gaps = 14/475 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALSS +  ++ R+G IY+  +  G    P+ V G   +  
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVMG-TTDKR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID---KRSPEPREITMFYK 226
           GT   F P   IF+   + +D +  R+REL++LN+ ++I+L D       +PR      K
Sbjct: 60  GTRQQFWPDKTIFTTIHYQWDIIARRMRELAYLNAGIKITLTDLRANEEGKPRVEVFHAK 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G++ FV Y+DRH+  L    I ++  +  I I++A+ +N  Y EN+  + NNI   +GG
Sbjct: 120 DGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGG 179

Query: 287 THLSGLRSALTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           THLSG R+ALTR + +Y +     S   +K K  + G+D REG T+V+SIK+ +P+F  Q
Sbjct: 180 THLSGFRTALTRVLKAYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQ 239

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEV   V+  V + L+ +LEEHP EAK I +KV+ A+  R AAR+AR+  +RK
Sbjct: 240 TKTKLGNSEVSGAVQQAVGEALTNYLEEHPAEAKKICEKVVLAATARIAARKARESVQRK 299

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             +    LPGKLADCS +DPK  E+FLVEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 300 NFMSGGGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEK 359

Query: 463 ARFDKMLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
            ++ ++  ++ +  +I ++G   G         +I+KLRY KIIIMTDADVDG+HI TL+
Sbjct: 360 VQWHRVFEAESVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLI 419

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEE 571
           +T F+R MP +I +G LYI  PPLY  +    + +Y   E+  + +    +  +E
Sbjct: 420 MTLFYRFMPKVIEDGHLYIANPPLYKCSYKNKVSEYCYTEQQRQAFFDKYANGDE 474


>gi|33186739|emb|CAE12283.1| gyrase B subunit [Vibrio pomeroyi]
          Length = 404

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 249/406 (61%), Positives = 315/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKFN  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFNDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ C TNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCSTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|148971289|gb|ABR20182.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 208/423 (49%), Positives = 284/423 (67%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I   G I+  ++  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHSNGLIHRQTYHKGAPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F++DTL HR REL+FLN  + I L ++ + 
Sbjct: 61  APLTVFGETA-QRGTIIRFWPDMTIMETDQFSFDTLSHRFRELAFLNPVLTIHLKEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG   ++S+++P
Sbjct: 178 FANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLMGIISVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK +L SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A
Sbjct: 236 GPQFEGQTKAELGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|253826382|gb|ACT36494.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 222/408 (54%), Positives = 300/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE++ VEGDSAGGSAKQGR R +QAILPLRGKILNVE+
Sbjct: 298 RALEVSSLPGKLADCSTKDASISEVYSVEGDSAGGSAKQGRDRHSQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRVIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|295979561|dbj|BAJ07453.1| DNA gyrase subunit B [Chromobacterium sp. MBIC3901]
          Length = 303

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 172/306 (56%), Positives = 217/306 (70%), Gaps = 3/306 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DT   +GLHHM++EVLDNAIDE+L G+AD I VT+N D S +V DNGRGIPTD+H EEG 
Sbjct: 1   DTQDGTGLHHMVFEVLDNAIDEALAGHADTIKVTINPDNSVSVEDNGRGIPTDIHPEEGR 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+  SYK+SGGLHGVGVSVVNALS WLKL+I R+G ++EM F  G
Sbjct: 61  SAAEVIMTILHAGGKFDSNSYKISGGLHGVGVSVVNALSDWLKLKIWRDGKVHEMEFRRG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL VTG   +  GTEVTF  S + F   +F++D L  R+RELSFLN  V I LIDK
Sbjct: 121 DAVAPLTVTGHTSH-RGTEVTFFASVETFGHIEFHFDILAKRIRELSFLNQGVGIQLIDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           RS +       + GG+  FV Y++R+K  L        G +D +++++AM+WND Y ENV
Sbjct: 180 RSGKE--ENFAFSGGVAGFVEYMNRNKTVLHPKTFYGLGEKDGMTVEVAMQWNDSYQENV 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGG H++ LR  +TR +  ++E+S  +KK K    GDD REG T VLS+K
Sbjct: 238 QCFTNNIPQRDGGAHMTALRQVMTRTLNQFIEESEAAKKAKVDTTGDDMREGLTCVLSVK 297

Query: 334 MPDPRF 339
           +PDP+F
Sbjct: 298 LPDPKF 303


>gi|239735437|dbj|BAH70485.1| gyrase B subunit [Cardinium endosymbiont of Amphitetranychus
           quercivorus]
          Length = 478

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 226/468 (48%), Positives = 313/468 (66%), Gaps = 9/468 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           + +YK+SGGLHGVGVS VNALS+ L++ + R G IY+  +  GI   P+   GS     G
Sbjct: 1   KDTYKISGGLHGVGVSCVNALSAHLEVTVYRNGKIYKQEYAQGIPRYPVKEVGSTA-LRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYK 226
           T V F P + IF+   +N  T+ +RL+EL++LN  + + L D R  +    P + T   +
Sbjct: 60  TTVHFTPDNSIFTTTVYNLHTIVNRLQELAYLNVGLTMQLEDHRERDEQNSPFKQTFHSE 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+  FVS+LD  K  +M +PI ++G ++N+ + +AM +N GY E V+ + NNI   +GG
Sbjct: 120 GGLLEFVSHLDSTKVSIMPAPILVEGEKNNVIVQVAMTYNTGYSETVVSYVNNIHTIEGG 179

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H++G + A TR + SY +KS   +K K  +IGDD REG T+V+S+K+ +P+F  QTK K
Sbjct: 180 MHVTGFKRAXTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  VES V + L  +LEEHP EAK+I+ KV+ A+  R AAR+AR++ +RK VL 
Sbjct: 240 LGNAEVQGAVESCVAEVLHYYLEEHPKEAKLIINKVIVAAQARQAARKAREMVQRKNVLM 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
             SLPGKLADCSERDP   ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  
Sbjct: 300 SNSLPGKLADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQTY 359

Query: 467 KMLSSQEIGTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           K+  ++++  +ITALG  +G      +  ++KLRYHKI+IMTDADVDG+HIRTL+LTFFF
Sbjct: 360 KIYDNEQVRNMITALGVSMGTDGTDQATHLDKLRYHKIVIMTDADVDGSHIRTLILTFFF 419

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           R M  +I  G LYI  PPLY + R K   Y   E   E ++   SL +
Sbjct: 420 RYMREVIEKGHLYIASPPLYLVKRDKEEHYCWTELEKEKWVKELSLKD 467


>gi|253826372|gb|ACT36489.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 221/408 (54%), Positives = 300/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L+++++REG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVEREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++PL Q PI ++G +D+I +++A+++NDGY EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPLHQPPIYVEGEKDHIQVEVALQYNDGYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GD  REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDGVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKI+IMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIVIMTDADVDG 404


>gi|33146006|emb|CAD57647.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 404

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 246/406 (60%), Positives = 313/406 (77%), Gaps = 3/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFNNIEFHYDILAERLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI AFV +L+ ++ P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGILAFVEHLNTNETPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQA+LPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAVLPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|84310488|gb|ABC55392.1| DNA gyrase subunit B [Bacillus sonorensis]
          Length = 409

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 203/410 (49%), Positives = 292/410 (71%), Gaps = 3/410 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+   YKVSGGLHGVG SVVNALS+ L + + R+G ++   +  G+    L V
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKVHYQEYERGVPKADLKV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G       T   F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+
Sbjct: 61  IGDTDVTGTTTH-FKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERK 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+++V +L+R ++ + + P+ I+GS+D I++++A+++ND Y  N+  F NNI
Sbjct: 120 NEYCYEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +G ++ LTR I  Y  ++   K++  ++ G+D REG T+++SIK PDP+F 
Sbjct: 180 HTYEGGTHEAGFKTGLTRVINDYARRNGVFKENDPNLSGEDVREGLTAIISIKHPDPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTR
Sbjct: 240 GQTKTKLGNSEARAITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L++++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 300 RKSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDG
Sbjct: 360 EKARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDG 408


>gi|33187289|gb|AAP97507.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 206/412 (50%), Positives = 283/412 (68%), Gaps = 6/412 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R   IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNEEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV   D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVI--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+H
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSH 406


>gi|148536426|gb|ABQ85765.1| DNA gyrase subunit B [Aliivibrio fischeri]
 gi|164608580|gb|ABY62581.1| DNA gyrase beta subunit [Aliivibrio fischeri]
          Length = 402

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 244/404 (60%), Positives = 314/404 (77%), Gaps = 3/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G  + PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGK 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS + F+   F Y+ L  RLRELSFLNS V I L D R  E +     
Sbjct: 61  T-DTTGTKIRFWPSEETFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVQHLNRNKTPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G RSALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDIAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           RFDKMLSSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 RFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|110612713|gb|ABG78319.1| GyrB [uncultured bacterium]
 gi|110612715|gb|ABG78320.1| GyrB [uncultured bacterium]
          Length = 409

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 251/412 (60%), Positives = 311/412 (75%), Gaps = 4/412 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  +YKVSGGLHGVGVSVVNALSS LKL I+R G  YE  + +G+   PL +TG A 
Sbjct: 1   GKFDDNTYKVSGGLHGVGVSVVNALSSVLKLAIRRNGQTYEQEYHDGVPQQPLSITGPA- 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT+V F PS   F+   F++DTL  RLRELSFLNS V+I L D+RS E       Y+
Sbjct: 60  QGTGTKVHFWPSPATFNNIHFSFDTLAKRLRELSFLNSGVRIVLQDERSSEQ--EVFQYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           GG+ AFV YL+ HK  L Q      Q     I++++AM+WNDGY E V CFTNNIPQ+DG
Sbjct: 118 GGLSAFVHYLNTHKTALNQVFHFTAQAEDSGITVEIAMQWNDGYQEAVYCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL G R+ALTR + +Y+E+    KK+K S  G+D REG T+++S+K+PDP+FSSQTK+
Sbjct: 178 GTHLQGFRTALTRTLNTYMEREGYLKKEKVSTSGEDAREGLTAIVSVKVPDPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV   V + +N+    +L E+P   K IV K++DA+  R+AAR+AR++TRRKG L
Sbjct: 238 KLVSSEVTQAVANLMNEKFEEYLLENPQAGKSIVSKMIDAARAREAARKAREMTRRKGAL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA LPGK ADC ERDP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARF
Sbjct: 298 DIAGLPGKFADCQERDPALSELYLVEGDSAGGSAKQGRNRRMQAILPLKGKILNVEKARF 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           DKMLSS E+GTLITALG GIG++ ++ +KLRYHKIII+TDADVDG+HIRTLL
Sbjct: 358 DKMLSSAEVGTLITALGCGIGREEYNPDKLRYHKIIIITDADVDGSHIRTLL 409


>gi|159894992|gb|ABX09842.1| DNA gyrase beta subunit [Vibrio sp. SB-84]
 gi|159894994|gb|ABX09843.1| DNA gyrase beta subunit [Vibrio sp. seaur.1.1]
          Length = 401

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 237/403 (58%), Positives = 315/403 (78%), Gaps = 3/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  T-DQTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVDHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|301477628|dbj|BAJ12099.1| DNA gyrase subunit beta [Pandoraea sp. KOx]
          Length = 423

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 245/426 (57%), Positives = 319/426 (74%), Gaps = 15/426 (3%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163
           VSGGLHGVGVS VNALSS+LKL ++R+G  + M F  G+              +PL V G
Sbjct: 1   VSGGLHGVGVSCVNALSSYLKLTVRRDGKKHFMEFHRGVPQNREIDVVDGVETSPLKVLG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
              +  GTEV FL    IF   +F+YD L  R+RELSFLN+ V+I L D+R+ +      
Sbjct: 61  DT-DKRGTEVHFLADETIFGKVEFHYDILAKRMRELSFLNNGVRIRLTDQRTGKE--DDF 117

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            + GG++ FV ++++ K  L  +   + G RD I +++AM+WND Y+E+VLCFTNNIPQ+
Sbjct: 118 AFGGGVKGFVEFINKSKTVLHPTVFHVVGERDGIGVEVAMQWNDSYNESVLCFTNNIPQR 177

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+GLR+A+TR I  Y+ +S  +KK K    GDD REG T VLS+K+P+P+FSSQT
Sbjct: 178 DGGTHLTGLRAAMTRVINKYISESEIAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQT 237

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR+ VE +V   L  +L+E P++AKII  K+++A+  RDAAR+AR++TRRKG
Sbjct: 238 KDKLVSSEVRAPVEEYVAKALEDFLQETPIDAKIICSKIVEAARARDAARKAREMTRRKG 297

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+A
Sbjct: 298 VLDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 357

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           RFDK++SS++I TLITALG GIG+D ++I+KLRYH+IIIMTDADVDGAHIRTLLLTF +R
Sbjct: 358 RFDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFLYR 417

Query: 524 QMPSLI 529
           Q+P LI
Sbjct: 418 QVPELI 423


>gi|110612707|gb|ABG78316.1| GyrB [uncultured bacterium]
          Length = 409

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 252/412 (61%), Positives = 312/412 (75%), Gaps = 4/412 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  +YKVSGGLHGVGVSVVNALSS LKL I+R G  YE  + +G+   PL +TG A 
Sbjct: 1   GKFDDNTYKVSGGLHGVGVSVVNALSSVLKLAIRRNGQTYEQEYHDGVPQQPLSITGPA- 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT+V F PS   F+   F++DTL  RLRELSFLNS V+I L D+RS E       Y+
Sbjct: 60  QGTGTKVHFWPSPATFNNIHFSFDTLAKRLRELSFLNSGVRIVLQDERSSEQ--EVFQYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           GG+ AFV YL+ HK  L Q      Q     I++++AM+WNDGY E V CFTNNIPQ+DG
Sbjct: 118 GGLSAFVHYLNTHKTALNQVFHFTAQAEDSGITVEIAMQWNDGYQEAVYCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL G R+ALTR + +Y+E+    KK+K S  G+D REG T+++S+K+PDP+FSSQTK+
Sbjct: 178 GTHLQGFRTALTRTLNTYMEREGYLKKEKVSTSGEDAREGLTAIVSVKVPDPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV   V + +N+    +L E+P   K IV K++DA+  R+AAR+AR++TRRKG L
Sbjct: 238 KLVSSEVTQAVANLMNEKFEEYLLENPQAGKSIVSKMIDAARAREAARKAREMTRRKGAL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARF
Sbjct: 298 DIAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRRMQAILPLKGKILNVEKARF 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           DKMLSS E+GTLITALG GIG++ ++ +KLRYHKIII+TDADVDG+HIRTLL
Sbjct: 358 DKMLSSAEVGTLITALGCGIGREEYNPDKLRYHKIIIITDADVDGSHIRTLL 409


>gi|159146558|gb|ABW90723.1| DNA gyrase beta subunit [Vibrio chagasii]
          Length = 401

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 245/403 (60%), Positives = 311/403 (77%), Gaps = 3/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + FS   F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVEHLNTNKTPIIQKIFHFDNERDDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VE  + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|148470180|gb|ABQ66038.1| gyrase b [uncultured bacterium]
 gi|148971281|gb|ABR20178.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 210/423 (49%), Positives = 286/423 (67%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNAL+  L L I + G I+  ++  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALTETLFLEIHQNGLIHRQTYHKGTPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F++DTL HR REL+FLN  + I L D+ + 
Sbjct: 61  APLAVFGETT-QRGTIIRFWPDMTIMETDQFSFDTLAHRFRELAFLNPVLTIHLKDEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P
Sbjct: 178 FANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A
Sbjct: 236 GPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|148793390|gb|ABR12759.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 403

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 238/405 (58%), Positives = 313/405 (77%), Gaps = 4/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNAL   ++L I R G+IY+ ++ +G+   PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALCEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|6939958|dbj|BAA90685.1| DNA gyrase subunit B [Sphingobacterium spiritivorum]
          Length = 479

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 219/467 (46%), Positives = 312/467 (66%), Gaps = 10/467 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ L   + R+G I++  +  G     +   G +   T
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKAIGESE-RT 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF P  +IF++   +NYDTL +RLREL+FLN  ++++++D+R        R+   F
Sbjct: 60  GTTVTFFPDPEIFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREILDDGSFRKDVFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            +GG++ FV +LD +++ L+ +PI ++G +  + ++LA+++ND Y ENV  + NNI   +
Sbjct: 120 SEGGLQEFVKFLDGNRQSLISNPIYVEGIKQGVPVELALQYNDTYSENVHSYVNNINTIE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG+H++G R  LTR +  Y E S   K  K  + GDD REG T+V+S+K+ +P+F  QTK
Sbjct: 180 GGSHVAGFRRGLTRTLKKYAEDSGLLKNLKVEIAGDDFREGLTAVISVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++EV   V+  V + LS +LEE+P EAK+IV+KV+ A+  R AAR+AR++ +RK V
Sbjct: 240 TKLGNNEVMGAVDVAVGEILSTYLEENPREAKMIVQKVVIAAQARAAARKAREMVQRKTV 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  + LPGKLADCS+ DP K E+F VEGDSAGG+AKQGR R+ QAI+PLRGKILNVE+A 
Sbjct: 300 MGGSGLPGKLADCSDNDPHKCEIFFVEGDSAGGTAKQGRDRKFQAIMPLRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  +G           KLRYHKI+IMTDADVDG+HI TL+LTF
Sbjct: 360 EHKIYENEEIKNMFTALGVSVGTADDAKALNLEKLRYHKIVIMTDADVDGSHIATLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           +FR M  LI NG++YI  PPLY + +GK  +Y   EE     +    
Sbjct: 420 YFRYMKELIENGYVYIATPPLYLVKKGKESEYAWTEEQRLQAIQRLK 466


>gi|110264809|gb|ABG56980.1| DNA gyrase beta subunit [Vibrio harveyi]
 gi|159895000|gb|ABX09846.1| DNA gyrase beta subunit [Vibrio harveyi]
          Length = 400

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 239/402 (59%), Positives = 314/402 (78%), Gaps = 3/402 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  T-DQTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|33145996|emb|CAD57638.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 403

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 247/404 (61%), Positives = 315/404 (77%), Gaps = 3/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             ++TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DNTGTEIRFWPSEETFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P++Q  +     R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVEHLNTNKTPIIQKILHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|148971371|gb|ABR20223.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 242/421 (57%), Positives = 310/421 (73%), Gaps = 1/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L + R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSEHLWLEVHRQGRMHRQEYRMGEPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             +     A    GT V FLPS+++F++ +F+YD L  RLREL+FLNS ++I L D R  
Sbjct: 61  FAMRDV-EASVRRGTTVRFLPSTEVFAITEFHYDILAKRLRELAFLNSGLRIELADLRPG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           + RE    Y+GGI AFV +L   K PL    I +    D I +++A++W DGY E V C+
Sbjct: 120 QEREDVFAYEGGICAFVQHLVELKTPLHPKVISLNYRADGIEVEVALQWTDGYQEGVYCY 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ+DGGTHL+G R+ALTR +T Y+E++  +K  K  + G D REG  +VLS+K+PD
Sbjct: 180 TNNIPQRDGGTHLTGFRAALTRTLTQYIERANLAKNAKVQLSGGDMREGLIAVLSVKVPD 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV++VVE  V   L  +L E+P EA+ I  KV+DA+  R+AAR+AR
Sbjct: 240 PKFSSQTKEKLVSSEVKTVVEQGVGQTLEEFLLENPGEARTIAGKVVDAARAREAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLA C E+DP  SELFLVEG SAGGSAKQGR+R+NQA+LPL+GK
Sbjct: 300 EMTRRKGALDIAGLPGKLAACQEKDPALSELFLVEGHSAGGSAKQGRNRKNQAVLPLKGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNV +ARF +ML+S E+GTLITALG GIG++ +  +K+RYH+IIIMTDA   G+HIRTL
Sbjct: 360 ILNVAKARFHRMLASAEVGTLITALGCGIGKEEYTPDKIRYHRIIIMTDATSTGSHIRTL 419

Query: 517 L 517
           L
Sbjct: 420 L 420


>gi|33187319|gb|AAP97522.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei]
          Length = 405

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 205/410 (50%), Positives = 282/410 (68%), Gaps = 6/410 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R   IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNKEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPVEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDG 404


>gi|253826388|gb|ACT36497.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 220/408 (53%), Positives = 298/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVS VNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSDVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYH IIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHNIIIMTDADVDG 404


>gi|148971319|gb|ABR20197.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 210/423 (49%), Positives = 286/423 (67%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRRTYHKGAPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F++DTL HR REL+FLN  + I L ++ + 
Sbjct: 61  APLAVFGETA-QRGTIIRFWPDMTIMETDQFSFDTLSHRFRELAFLNPVLTIHLKEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P
Sbjct: 178 FANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A
Sbjct: 236 GPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|61661944|gb|AAX51627.1| DNA gyrase beta subunit [Photobacterium iliopiscarium]
          Length = 403

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 238/405 (58%), Positives = 313/405 (77%), Gaps = 4/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGG  +  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ NG+   PL   G 
Sbjct: 1   AGGNCDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCNGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTTNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q     +  R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFESEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|159146562|gb|ABW90725.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 400

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 243/402 (60%), Positives = 314/402 (78%), Gaps = 3/402 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+ +  ++ +G+ D PL + G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y
Sbjct: 61  E-KTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFMY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV++L+R+K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+D
Sbjct: 119 EGGIQAFVTHLNRNKTPIHEKVFHFNSEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R+ALTR + SY++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK
Sbjct: 179 GGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VESF+ D L+ +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 299 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           FDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 400


>gi|312271578|gb|ADQ56144.1| DNA gyrase subunit B [Vibrio sp. SA0706-05S]
          Length = 373

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 210/375 (56%), Positives = 284/375 (75%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GHCKDIVVTIHEDNSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT++ F PS
Sbjct: 61  GLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++ FS  +F+YD L  RLRELSFLNS V I LID+R  +  +    Y+GGI+AFV +L+ 
Sbjct: 120 AETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADK-QDHFMYEGGIQAFVQHLNT 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALT
Sbjct: 179 NKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 299 SAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|13517017|dbj|BAB40391.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04453]
          Length = 474

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 218/467 (46%), Positives = 303/467 (64%), Gaps = 10/467 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G   + T
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTLYPVKSVGET-DIT 59

Query: 170 GTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMF 224
           GT VTF+P   IF+   ++NYDTL +R+REL++LN  V I+L DKR+     E    T F
Sbjct: 60  GTIVTFVPDKSIFTLTTEYNYDTLANRMRELAYLNKGVTITLTDKRNKDDKGEFVSETFF 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G++ F+ +LD  ++PL+QS I ++G ++   +++AM +N G+ EN+  + NNI   +
Sbjct: 120 SNEGLKEFIKFLDETREPLIQSVISMEGEKNGTPVEVAMIYNTGFSENLHSYVNNINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLSG R  LT  +  Y + S    K K  V GDD REG T+++S+K+ +P+F  QTK
Sbjct: 180 GGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL + EV S V   V++ L+ +LEEHP +AK +V+KV+ A+  R AA +AR++ +RK  
Sbjct: 240 TKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQRKNP 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           + +  LPGKL+DC E+DP K E+FLVEGDSAGG+AKQGR R  QA LP RGKILNVE+A 
Sbjct: 300 MSVGGLPGKLSDCFEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAFLPFRGKILNVEKAM 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+   +EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 QHKVFEIEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKLVIMCDADVDGSHIETLILTF 419

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           FFR M  LI  G +YI  PPLY + +G   +Y  +++  ++ + +  
Sbjct: 420 FFRYMRELIEGGHVYIATPPLYLVKKGSKRRYAWNDQERDEIVESMK 466


>gi|253826358|gb|ACT36482.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 220/408 (53%), Positives = 299/408 (73%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+   R   
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTDISRT-- 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L+++++P+ Q PI ++G +D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGIISFVEHLNQNREPVHQPPIYVEGKKDHIQVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD  EG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVSEGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRR+
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRR 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE ++VEGDSAGGSAKQGR+R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEAYIVEGDSAGGSAKQGRNRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS+ EI  +ITALGTGIG+D FDI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSNAEIRAIITALGTGIGED-FDISKARYHKIIIMTDADVDG 404


>gi|239735439|dbj|BAH70486.1| gyrase B subunit [Cardinium endosymbiont of Eotetranychus
           suginamensis]
          Length = 462

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 223/460 (48%), Positives = 304/460 (66%), Gaps = 9/460 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS  L++ + R G IY+  +  GI   P+   GS     GT V F P 
Sbjct: 1   GLHGVGVSCVNALSXHLEVTVYRNGKIYKQEYAQGIPRYPVKEVGSTA-LRGTTVHFTPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
           + IF+   +N  T+ +RL+EL++LN  + + L D R  +    P + T   +GG+  FVS
Sbjct: 60  NSIFTTTVYNLHTIVNRLQELAYLNVGLTMQLEDHRERDEQNSPFKQTFHSEGGLLEFVS 119

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD  K  +M +PI ++G ++N+ + +AM +N GY E V+ + NNI   +GG H++G + 
Sbjct: 120 HLDSTKVSIMPAPILVEGEKNNVIVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFKR 179

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY +KS   +K K  +IGDD REG T+V+S+K+ +P+F  QTK KL ++EV+ 
Sbjct: 180 ALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQG 239

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES V + L  +LEEHP EAK+I+ KV+ A   R AAR+AR++ +RK VL   SLPGKL
Sbjct: 240 AVESCVAEVLHYYLEEHPKEAKLIINKVIVAVQARQAARKAREMVQRKNVLMSNSLPGKL 299

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCSERDP   ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  K+  ++++
Sbjct: 300 ADCSERDPALCELFLVEGDSAGGTAKIGRNRRFQAILPLKGKILNVEKAQTYKIYDNEQV 359

Query: 475 GTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +ITALG  +G      +  ++KLRYHKI+IMTDADVDG+HIRTL+LTFFFR M  +I 
Sbjct: 360 RNMITALGVSMGTDGTDQATHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYMREVIE 419

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            G LYI  PPLY + R K   Y   E   E  +   SL +
Sbjct: 420 KGHLYIASPPLYLVKRDKEEHYCWTELEKEKRVKELSLKD 459


>gi|55469461|gb|AAV52389.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469463|gb|AAV52390.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469465|gb|AAV52391.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469467|gb|AAV52392.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469479|gb|AAV52398.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|61661860|gb|AAX51585.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661902|gb|AAX51606.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661908|gb|AAX51609.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661912|gb|AAX51611.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661920|gb|AAX51615.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264833|gb|ABG56992.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264835|gb|ABG56993.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264837|gb|ABG56994.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264839|gb|ABG56995.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264861|gb|ABG57006.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264865|gb|ABG57008.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 402

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 241/404 (59%), Positives = 314/404 (77%), Gaps = 4/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++   
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 MYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|61661868|gb|AAX51589.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 402

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 238/404 (58%), Positives = 314/404 (77%), Gaps = 4/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF++ SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G 
Sbjct: 1   AGGKFDENSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++   
Sbjct: 61  S-DKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 TYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|209863971|gb|ACI88903.1| GyrB [Leptospirillum ferriphilum]
          Length = 419

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 206/424 (48%), Positives = 282/424 (66%), Gaps = 8/424 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L+L I + G ++  ++  G  +
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSETLQLEIHQNGLVHRQTYHKGTPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F+++TL HR REL+FLN  + I L ++ + 
Sbjct: 61  APLAVVGET-QSRGTTIRFWPDMTIMETDQFSFETLAHRFRELAFLNPVMTIHLKEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN--VL 274
             RE    ++GGI++FV++L+ +KK L       +   D    ++A        EN  VL
Sbjct: 119 -LREEAFHFEGGIQSFVAFLNENKKILHDVLFFRKQLEDGAQFEVAFFQYQESTENETVL 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F NNI  ++G TH+ G R+ALT+ I  ++ +   +K ++    G+D REG T+V+S+++
Sbjct: 178 GFANNIHTREGATHVRGFRTALTKTINKFIREKQLNKGEEVR--GEDVREGLTAVISVRI 235

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL SS V   +ESF+++ L    +E PL AK I +K +  +  R+AAR+
Sbjct: 236 SNPQFEGQTKGKLGSSWVAGAMESFLSEALQDKFDEDPLVAKKIAEKAVLTAQAREAARK 295

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           A+DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+
Sbjct: 296 AKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLK 355

Query: 455 GKILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           GKILNVE++R  +K +++ E+  LITA+G G+G + F   KLRYHKIIIMTDADVDG+HI
Sbjct: 356 GKILNVEKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVDGSHI 415

Query: 514 RTLL 517
           RTLL
Sbjct: 416 RTLL 419


>gi|61661956|gb|AAX51633.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 401

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 238/403 (59%), Positives = 312/403 (77%), Gaps = 4/403 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G +
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGDS 60

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++    
Sbjct: 61  -DKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHFT 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+
Sbjct: 119 YEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|148536442|gb|ABQ85773.1| DNA gyrase subunit B [Vibrio orientalis]
          Length = 400

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 237/402 (58%), Positives = 312/402 (77%), Gaps = 3/402 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+ +  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVTLTIHRGGHTHTQTYHHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS + F+  +F+YD L  RLRELSFLNS V I L D+R  E +     
Sbjct: 61  T-DKTGTQIRFWPSGETFTNTEFHYDILAKRLRELSFLNSGVSIMLKDER-EEDKSDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVDHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|15530011|gb|AAL01494.1| gyrase B [bacterium W3 18-1]
          Length = 406

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 244/409 (59%), Positives = 316/409 (77%), Gaps = 4/409 (0%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D P+   G A  
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSRKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT- 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I LID+R  +       Y+G
Sbjct: 60  KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLIDERDNKN--EFFKYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG
Sbjct: 118 GISAFVDYLNRNKTPVNKEVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 LGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG+HIR 
Sbjct: 358 KMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRP 406


>gi|61661954|gb|AAX51632.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 401

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 237/403 (58%), Positives = 312/403 (77%), Gaps = 4/403 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G +
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGDS 60

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++    
Sbjct: 61  -DKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHFT 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+
Sbjct: 119 YEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|148470184|gb|ABQ66040.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 248/421 (58%), Positives = 307/421 (72%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGK +  SYKVSGGLHGVGVSVVNALSS L L I R G ++E  + +G   
Sbjct: 1   EVIMTVLHAGGKLDDNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   + +GT V F PS   FS   FN + L  RLRELSFLN+ V+I L D+R  
Sbjct: 61  YPLRVIGET-DSSGTTVRFWPSELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
              E    Y+GG+  FV Y++  K  L +       + + I +++A++WN+ Y ENV CF
Sbjct: 119 -NLEHVYDYEGGLSEFVKYINEGKTHLNEIFHFTADTENGIGVEVALQWNESYQENVRCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRK  LDIA LPGKLADC E+DP  SEL+ VEGDSAGGSAKQGR+R+ QAILP +GK
Sbjct: 298 EMTRRKSALDIAGLPGKLADCQEKDPALSELYQVEGDSAGGSAKQGRNRKMQAILPWKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           I NVERARFDK +S QE+GT ITALG GIG++ ++ +KLRYHKIII TDADVDG+HIRTL
Sbjct: 358 IQNVERARFDKTISGQEVGTQITALGCGIGREEYNPDKLRYHKIIIKTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|55469469|gb|AAV52393.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469471|gb|AAV52394.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469473|gb|AAV52395.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469475|gb|AAV52396.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469477|gb|AAV52397.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|61661904|gb|AAX51607.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661906|gb|AAX51608.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661910|gb|AAX51610.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661914|gb|AAX51612.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661916|gb|AAX51613.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661918|gb|AAX51614.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661934|gb|AAX51622.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661936|gb|AAX51623.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661938|gb|AAX51624.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661940|gb|AAX51625.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661942|gb|AAX51626.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264827|gb|ABG56989.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264829|gb|ABG56990.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264831|gb|ABG56991.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264845|gb|ABG56998.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264847|gb|ABG56999.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264855|gb|ABG57003.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264863|gb|ABG57007.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 402

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 241/404 (59%), Positives = 314/404 (77%), Gaps = 4/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++   
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 MYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|119369920|gb|ABL67974.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 258/423 (60%), Positives = 326/423 (77%), Gaps = 5/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G I+E  + NG+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDELHLTIERHGKIHEQHYRNGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P V        TGT+V F PSS  F+  +F+YD L  RLRELSFLNS V+I L D+RS 
Sbjct: 61  EP-VKVTGDTTTTGTKVWFKPSSATFTNIEFHYDILAKRLRELSFLNSGVKIHLHDERSD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI+AFV +L+R+K P++        ++DN++++LA++WND + ENV CF
Sbjct: 120 KR--DEFCYEGGIKAFVEHLNRNKTPIIPCVFSFTAAKDNVAVELALQWNDSFQENVYCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R+ LTR + +Y+EK   +KK+K S  GDD REG T++LS+K+ D
Sbjct: 178 TNNIPQKDGGTHLAGFRAGLTRTLNTYIEKEGLAKKEKVSTTGDDAREGLTAILSVKVAD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+S VES V +  + +L E+P  +K+IV K+ +A+  RDAARRAR
Sbjct: 238 PKFSSQTKDKLVSSEVKSSVESLVAEKFNDFLLENPSVSKVIVGKMFEAARARDAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++ RRKG +DIA LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR R+ QAILPL+GK
Sbjct: 298 EMVRRKGAMDIAGLPGKLADCQEKDPAMSEIYIVEGDSAGGSAKQGRDRKFQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM--TDADVDGAHIR 514
           ILNVE+ARFDKMLSSQE+ TLITALG GIG + +D +K+RYH+IIIM  TDADVDG+HIR
Sbjct: 358 ILNVEKARFDKMLSSQEVATLITALGCGIGHEDYDPDKVRYHRIIIMTDTDADVDGSHIR 417

Query: 515 TLL 517
           TLL
Sbjct: 418 TLL 420


>gi|198042666|gb|ACH81158.1| GyrB [Alteromonas sp. UST010723-013]
          Length = 399

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 246/402 (61%), Positives = 307/402 (76%), Gaps = 4/402 (0%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  SYKVSGGLHGVGVSVVNALSS LKLRI+R G  +E  + +G+   PL 
Sbjct: 1   TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSRLKLRIRRGGKAHEQEYHHGVPQAPLA 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG   + TGT + F PSSD F+   ++YD L  RLRELSFLNS V I L D+R  +   
Sbjct: 61  VTGDT-DKTGTMIRFWPSSDTFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERDGKE-- 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNN 279
               Y+GGI+AFV YL+  K P+ Q          D I++++AM+WND + ENV CFTNN
Sbjct: 118 DHFMYEGGIKAFVEYLNEKKTPVHQKVFHFCSEQEDGIAVEVAMQWNDSFQENVFCFTNN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+G R ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+PDP+F
Sbjct: 178 IPQRDGGTHLAGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKF 237

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEVR  VES +N+ L+ +L E+P E+KII  K++DA+  R+AAR+AR++T
Sbjct: 238 SSQTKDKLVSSEVRPAVESAMNEKLAEFLLENPAESKIIAGKIIDAARAREAARKAREMT 297

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILN
Sbjct: 298 RRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 357

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           VE+ARFDKMLSSQE+ TLITALG GIG+D +D  KLRYH I+
Sbjct: 358 VEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHSIL 399


>gi|89891250|ref|ZP_01202757.1| topoisomerase IV. subunit B [Flavobacteria bacterium BBFL7]
 gi|89516562|gb|EAS19222.1| topoisomerase IV.  subunit  B [Flavobacteria bacterium BBFL7]
          Length = 620

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 188/666 (28%), Positives = 305/666 (45%), Gaps = 64/666 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M++N Q   Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EV+DN+IDE 
Sbjct: 1   MAENTQ---YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILVKEVIDNSIDEF 57

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I V++  +   TV D GRGIP            +V+ ++++ GGK++ +++K 
Sbjct: 58  VMGSGKTIEVSIQGE-RVTVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKK 108

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALSS+ ++   R+G      F  G L N   +        GT++TF+
Sbjct: 109 SVGLNGVGTKAVNALSSYFRVESTRDGKSASAEFSRGEL-NDQEMLEETSRRKGTKMTFV 167

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P  +IF    F  + +   L+   +LN  + I    ++         F + G++  +S  
Sbjct: 168 PDGEIFKNFKFRPEYVARMLKNYVYLNPGLTIMFNGEK--------FFSENGLKDLLSEN 219

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                 L    I ++     ++I         Y E    F N      GGTHL+  R AL
Sbjct: 220 IVDTDRLYP-IIHLKSEDIEVAIT---HSRTQYSEEYHSFVNGQNTTQGGTHLAAFREAL 275

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            R +  +  K++ +          D R+   S ++IK+ +P F SQTK KL S+++    
Sbjct: 276 VRTVREFYGKNYDAS---------DIRKSIVSAIAIKVMEPVFESQTKTKLGSTDMGGDL 326

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLD 406
              R+ +  F+   L  +L +H   A+ I +K++ A   R      R       +K  L 
Sbjct: 327 PTVRTFINDFLKTKLDNYLHKHSDVAEAIQRKIIQAERERKDLSGIRKLARDRAKKASLH 386

Query: 407 IA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                     L D  + +  +S LF+ EGDSA GS  + R+   QA+  LRGK LN    
Sbjct: 387 NKKLRDCRVHLTDSKKENNLESTLFITEGDSASGSITKSRNVNTQAVFSLRGKPLNSYNM 446

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL          +  LRY+KI+I TDADVDG HIR LL+TFF +
Sbjct: 447 SKKIVYENEEFNLLQAALNI-----EDSMEDLRYNKIVIATDADVDGMHIRLLLITFFLQ 501

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI  G +YI++ PL+ +   K  +Y    E     L     + EI  F    G IS
Sbjct: 502 FFPELIKKGHIYILQTPLFRVRNKKETRYCYTPEERAAALAELGKNPEITRF-KGLGEIS 560

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            ++ ++FI + +++D L+ D   + ++              ++  +    +   L   L+
Sbjct: 561 PDEFKHFIGEDMRLDPLMLDDNMSIEELLKFYM-------GKNTPDRQEFIIDNLKVELD 613

Query: 644 FIAEKS 649
            I E +
Sbjct: 614 IIEEDT 619


>gi|33187339|gb|AAP97532.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 402

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 203/408 (49%), Positives = 281/408 (68%), Gaps = 6/408 (1%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           +T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +  
Sbjct: 1   LTVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEF 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +  
Sbjct: 61  GVIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK-- 117

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NN
Sbjct: 118 HESFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNN 175

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +++S+K+P+P+F
Sbjct: 176 IKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQF 235

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LT
Sbjct: 236 EGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELT 295

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           R+K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILN
Sbjct: 296 RKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILN 355

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           VE+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDAD
Sbjct: 356 VEKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDAD 402


>gi|42541269|gb|AAS19514.1| DNA gyrase subunit B [Photobacterium kishitanii]
          Length = 402

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 240/404 (59%), Positives = 314/404 (77%), Gaps = 4/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  + ++   
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EDGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 MYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|307939316|gb|ADN95849.1| DNA gyrase B [Hymenobacter sp. 35/26(2010)]
          Length = 435

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 214/436 (49%), Positives = 295/436 (67%), Gaps = 17/436 (3%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGGKF++ SYKVSGGLHGVGVS VNALS  LK+ ++R G++YE  +  G+   
Sbjct: 1   LIMTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGHLYEQEYKIGVPQY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           P+   G    + GT+V FLP   IF+   + Y+T+  RLRELS+LN  ++I+L D+R  +
Sbjct: 61  PVKQIGDTE-EHGTQVEFLPDDSIFTELVYKYETIATRLRELSYLNKGIRITLTDRRDND 119

Query: 218 PR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
                     + +GG+  FV YLD  +  LM  PI +   +    +++A+++ND Y E++
Sbjct: 120 VDGNFLYEEFYSEGGLSEFVGYLDAGRTVLMPKPIHVISEKGGTPVEVALQYNDSYQEHI 179

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             + NNI   +GGTH++G RSALTR + +Y +KS   +K K  + GDD REG T+V+S+K
Sbjct: 180 FSYVNNINTIEGGTHVAGFRSALTRTLKAYADKSGMLEKAKVEIQGDDFREGLTAVISVK 239

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL +S+V   V   V + L+ +LEE+P EA+IIV+KV+ A+  R AAR
Sbjct: 240 VQEPQFEGQTKTKLGNSDVSGAVNQAVGEILNQYLEENPKEARIIVEKVILAARARIAAR 299

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++ +RK VL   SLPGKLADCSE DPK  EL+LVEGDSAGG+AKQGR+R  QAILPL
Sbjct: 300 KAREMVQRKTVLGSNSLPGKLADCSESDPKICELYLVEGDSAGGTAKQGRNRAFQAILPL 359

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF------------DINKLRYHKII 501
           RGKILNVE+A+  ++  ++EI  +ITALG   G  +             ++ KLRYHK+I
Sbjct: 360 RGKILNVEKAQEHRIYENEEIKNMITALGVSFGTPADPENGIEADPKGLNMTKLRYHKVI 419

Query: 502 IMTDADVDGAHIRTLL 517
           IMTDA VDG+HIRTLL
Sbjct: 420 IMTDAXVDGSHIRTLL 435


>gi|37683433|gb|AAQ98790.1| gyrase B [Cardinium endosymbiont of Encarsia pergandiella]
          Length = 428

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 220/429 (51%), Positives = 302/429 (70%), Gaps = 9/429 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ +YK+SGGLHGVGVS VNALS+ L + + R G IY+  +  G+  
Sbjct: 1   EVIMTVLHAGGKFDKGTYKISGGLHGVGVSCVNALSAHLAVTVYRNGKIYKQEYAQGVPC 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G      GT V F P S IF+   +N  T+ +RL+ L++LN  +++ L D+R  
Sbjct: 61  YPVKEIG-TTELRGTTVHFTPDSSIFTTTVYNLHTIINRLQGLAYLNVGLRMQLEDRREQ 119

Query: 217 E----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +    P + T + +GG+  FVS+L+R K  +M +PI ++G ++NI + +AM +N GY E 
Sbjct: 120 DEQGNPFQQTFYSQGGLLEFVSHLERTKTSIMPTPILVEGEKNNIGVQVAMTYNTGYSET 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V+ + NNI   +GG H++G + ALTR + +Y +KS   +K K  +IGDD REG T+V+S+
Sbjct: 180 VVSYVNNIHTIEGGMHVTGFKRALTRTLKNYADKSGLLEKAKIEIIGDDFREGLTAVISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S VES V + L  +LEEHP EAK+IV KV+ A+  R AA
Sbjct: 240 KVGEPQFEGQTKTKLGNAEVQSAVESCVAEVLHYYLEEHPKEAKLIVNKVIVAAQARQAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++ +RK VL   SLPGKLADCSERDP   ELFLVEGDSAGG+AK GR+R  QAILP
Sbjct: 300 RKAREMVQRKNVLMSNSLPGKLADCSERDPTLCELFLVEGDSAGGTAKMGRNRRFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADV 508
           L+GKILNVE+A+  K+  ++++  +ITALG  IG DS +     +KLRYHKI+IMTDADV
Sbjct: 360 LKGKILNVEKAQAYKIYDNEQVRNMITALGVAIGTDSNEQAINLDKLRYHKIVIMTDADV 419

Query: 509 DGAHIRTLL 517
           DG+HIRTLL
Sbjct: 420 DGSHIRTLL 428


>gi|88824771|gb|ABD52431.1| gyrase B [Shigella sonnei]
          Length = 405

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 250/408 (61%), Positives = 315/408 (77%), Gaps = 4/408 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I    + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIRRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFANVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLL
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 405


>gi|2905610|gb|AAC03530.1| gyrase subunit B [Shewanella pealeana]
          Length = 419

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 242/422 (57%), Positives = 314/422 (74%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L++ I+R+G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQMTIRRDGRVYEQFYAHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS+D F+   F++D L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIAPIGEAT-KTGTEIRFWPSTDTFTDVLFHFDILAKRVRELSFLNSGVGIRLVDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           + R+    Y+GGI AFV YL+ +  P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 118 DNRDEFFKYEGGISAFVDYLNVNNTPVDKEVFHFCQEREDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+E+   +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S V+  + + L  +L EHP EAK+IV K++DA+  R+  R+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVDQTMGEQLGDYLREHPNEAKLIVGKIIDAARARETGRKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+  RRKG LD+  LPGKLADC E+DP  SE+ +VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 RENNRRKGALDLGGLPGKLADCQEKDPGLSEMNIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GI   +  +      K    TDADV G+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGICVVNMTVLHAGGKKEDSTTDADVGGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|295979449|dbj|BAJ07397.1| DNA gyrase subunit B [Caulobacter crescentus CB15]
          Length = 318

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 194/318 (61%), Positives = 237/318 (74%), Gaps = 10/318 (3%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN DGS TV+D+GRGIP D+H+ EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATKVQVILNADGSVTVTDDGRGIPVDMHEGEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+L I R G +++M F  G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERG 120

Query: 154 ILDNPLVVTGSAGND----------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
                L VTG +             TGTEVTF PS D F+  +F+  TL+HRLREL+FLN
Sbjct: 121 DAVTSLKVTGDSPVRTEGPKAGETLTGTEVTFFPSKDTFAFIEFDRKTLEHRLRELAFLN 180

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I   D R  EP E  +FY+GGIEAFV +LD+ K PL+++PI ++G +D + IDLA+
Sbjct: 181 SGVTIWFKDHRDVEPWEEKLFYEGGIEAFVRHLDKAKTPLLKAPIAVKGVKDKVEIDLAL 240

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE +LCFTNNIPQ+DGGTHLS  R+ALTR ITSY E S   KK+K S+ G+D R
Sbjct: 241 WWNDSYHEQMLCFTNNIPQRDGGTHLSAFRAALTRIITSYAESSGILKKEKVSLGGEDSR 300

Query: 324 EGFTSVLSIKMPDPRFSS 341
           EG T VLS+K+PDP+FSS
Sbjct: 301 EGLTCVLSVKVPDPKFSS 318


>gi|110612679|gb|ABG78302.1| GyrB [uncultured bacterium]
          Length = 402

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 237/405 (58%), Positives = 312/405 (77%), Gaps = 4/405 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G + 
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+
Sbjct: 61  -TTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           GG+ AFV YL+ +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 118 GGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL G RS+LTR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+
Sbjct: 178 GTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV++ VE  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG L
Sbjct: 238 KLVSSEVKTAVEQEMNKYFADFLLENPSEAKAVVGKMIDAARAREAARKAREMTRRKGAL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARF
Sbjct: 298 DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARF 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           DKM+SSQE+GTLITALG GIG++ ++I+KLRYH IIIMTDADVDG
Sbjct: 358 DKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDG 402


>gi|159894990|gb|ABX09841.1| DNA gyrase beta subunit [Vibrio sp. idb.1.4]
 gi|159895004|gb|ABX09848.1| DNA gyrase beta subunit [Vibrio sp. GB-215]
          Length = 400

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 236/402 (58%), Positives = 314/402 (78%), Gaps = 3/402 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  T-DQTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVDHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|239735457|dbj|BAH70495.1| gyrase B subunit [Cardinium endosymbiont of Culicoides arakawae]
          Length = 478

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 224/458 (48%), Positives = 312/458 (68%), Gaps = 9/458 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           + SYK+SGGLHGVG+S VNALS  L+  + R+G IY+  +  GI   P+   G   N  G
Sbjct: 1   KDSYKISGGLHGVGISCVNALSDRLEAIVYRDGKIYKQEYAKGIPLYPVKEMGET-NLRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYK 226
           T + F P   IF+   +N  T+ +RL+EL++LN  ++++L D R  +    P     + +
Sbjct: 60  TTIHFAPDHSIFTTTVYNLHTITNRLQELAYLNVGLKMTLEDLREKDDQGNPMHQAFYSE 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+  FVSYLD  K+ +M +PI ++G ++++ + +AM +N GY E V+ + NNI   +GG
Sbjct: 120 GGLREFVSYLDSTKESIMPAPIFVEGEKNDVVVQVAMTYNTGYSETVVSYVNNINTVEGG 179

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H++G R ALTR + SY +KS   +K K  +IGDD REG T+V+S+K+ +P+F  QTK K
Sbjct: 180 MHVTGFRRALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVVSVKVAEPQFEGQTKTK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  VE+ V + L  +LEEHP EAK+IV KV+ A+  R AAR+AR++ +RK VL 
Sbjct: 240 LGNAEVQGAVETCVAEVLHYYLEEHPKEAKLIVAKVIVAAQARQAARKAREMVQRKNVLT 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            +SLPGKLADCSE DP   ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  
Sbjct: 300 NSSLPGKLADCSENDPTLCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQVY 359

Query: 467 KMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           K+  ++++  +ITALG  IG +       ++KLRYHKI+IMTDADVDG+HIRTL+LTFFF
Sbjct: 360 KIYDNEQVRNMITALGVVIGTEGDDKAVHLDKLRYHKIVIMTDADVDGSHIRTLILTFFF 419

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           R + S+I  G+LYI  PPLY + R K  QY   E   +
Sbjct: 420 RYLRSIIEKGYLYIASPPLYLVKRDKEAQYCWTESEKD 457


>gi|9971299|dbj|BAB12467.1| DNA gyrase B subunit [Marinospirillum minutulum]
          Length = 404

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 244/407 (59%), Positives = 308/407 (75%), Gaps = 4/407 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I R+  +YE  + +G+   PL V GS  + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLTLTIWRDKQVYEQVYRHGVPQTPLTVIGST-DKSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T   F PS++ F+  +F++DTL  RLRELSFLNS V+ISL+D+R+   RE    Y+GG+ 
Sbjct: 60  TLARFRPSNETFTNIEFSFDTLAKRLRELSFLNSGVKISLVDERNG--REEIFHYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K  L +      Q     +++++AM+WNDGY EN+ C+TNNIPQ+DGG HL
Sbjct: 118 AFVDHLNTNKTTLGKVFYFSHQREEGGVNVEVAMQWNDGYSENIYCYTNNIPQRDGGAHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR +  Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRGALTRVLNQYIEQEGLAKKAKVSTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR+ VE  +    S +L E P EAK IV K+LDA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVRTAVEQEMGKTFSDFLLEFPQEAKAIVSKMLDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           SS E+GTLITALG GIG++ F+ +KLRYH IIIMTDADVDG+HIRTL
Sbjct: 358 SSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADVDGSHIRTL 404


>gi|110612651|gb|ABG78288.1| GyrB [uncultured bacterium]
          Length = 397

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 254/400 (63%), Positives = 315/400 (78%), Gaps = 3/400 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L L IKR G +YE  + +G+ D PL VTG A N 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEELHLLIKRHGKVYEQHYHHGVPDAPLAVTGEA-NA 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT+V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R+ +    T  Y+GG
Sbjct: 60  TGTQVWFKPSAQTFTNIEFHYDILAKRLRELSFLNSGVGILLFDERTNKQ--DTFRYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+R+K P++ S   + G +DNIS++LA++WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEHLNRNKTPIIPSVFSMSGEKDNISVELALQWNDSYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+GLRSALTR + +Y+E    +KK K +  GDD R G T+VLS+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGLRSALTRTLNNYIENEGHAKKAKVTTTGDDARGGLTAVLSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+SVVES V + L+ +L E+P  AK IV K+++A+  R+AARRARD+TRRK  LDIA
Sbjct: 238 SSEVKSVVESLVAEKLNDYLLENPTVAKTIVGKIIEAARAREAARRARDMTRRKSALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           LSSQE+ TLITALG GIG D +D +K+RYH+IIIMTDADV
Sbjct: 358 LSSQEVATLITALGCGIGSDEYDPDKIRYHRIIIMTDADV 397


>gi|42541301|gb|AAS19530.1| DNA gyrase subunit B [Photobacterium profundum]
          Length = 402

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 240/404 (59%), Positives = 312/404 (77%), Gaps = 3/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G ++   + +G+ D PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGFVHHQIYRHGVPDKPLETIGE 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT + F PS   F+   F+Y+ L  RLRELSFLNS V I LID+R  E ++    
Sbjct: 61  T-DKTGTRLRFWPSEGTFTNVVFHYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI AFV++L+R+K P+          R++ I +++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIRAFVAHLNRNKTPIHAKVFHFDFEREDGIVVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG+HL+G R ALTR + ++++K   SKK+K S  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGSHLAGFRGALTRTLNTFMDKEGFSKKEKTSTCGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P +AKI+  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESVMGEKLSEFLLENPSDAKIVCGKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|23978288|dbj|BAC21126.1| DNA gyrase B subunit [Pseudanabaena sp. PCC 7403]
          Length = 392

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 186/389 (47%), Positives = 264/389 (67%), Gaps = 3/389 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH+++EV+DN++DE+L G+ ++I V L  DGS TVSDNGRGIP D+H + G SA 
Sbjct: 2   GPKGLHHLVFEVVDNSVDEALGGHCNLILVELLADGSVTVSDNGRGIPVDIHPKTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKS-YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           E +MT+L AGGKF  +S YKVSGGLHGVG+SVVNALS W+++++ R+ N+YE  F  G+ 
Sbjct: 62  ETVMTKLGAGGKFGGESGYKVSGGLHGVGISVVNALSEWVEVKVWRQSNVYEHRFERGVP 121

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              +  + +     GT+V F P + IF     F++ TL  RL+EL++LN+ V+I   D+R
Sbjct: 122 LGDMKTSIAESPSRGTQVRFKPDAQIFQTDTVFDFTTLAGRLKELAYLNAGVKIQFTDRR 181

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENV 273
             EPR  T  Y GGI  +V+Y+ R K+P+    I +QG RDN+ +++A++W  D Y++N+
Sbjct: 182 EEEPRIETYHYDGGIREYVAYMTREKEPIHPDIIYVQGERDNVQVEVALQWCVDAYNDNI 241

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           L F NNI   DGGTHL GL++ LTR +     K    K+   ++ G++ REG T+V+S+K
Sbjct: 242 LGFANNIRTIDGGTHLEGLKTVLTRSLNVIARKLKKLKEGDSNLAGENVREGLTAVISVK 301

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +P+P F  QTK KL + EVR +V+SFV + L+ +LE HP  A  I+ K + A    +AAR
Sbjct: 302 VPNPEFEGQTKTKLGNMEVRGIVDSFVGEVLNEYLEFHPAVAISILDKAIQAFNAAEAAR 361

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDP 422
           RAR+L RRK  L+ ++LPGKLADCS RDP
Sbjct: 362 RARELVRRKSALESSTLPGKLADCSSRDP 390


>gi|110264811|gb|ABG56981.1| DNA gyrase beta subunit [Aliivibrio fischeri]
 gi|110264813|gb|ABG56982.1| DNA gyrase beta subunit [Aliivibrio fischeri]
 gi|110264819|gb|ABG56985.1| DNA gyrase beta subunit [Aliivibrio fischeri]
 gi|110264821|gb|ABG56986.1| DNA gyrase beta subunit [Aliivibrio fischeri]
          Length = 401

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 243/403 (60%), Positives = 313/403 (77%), Gaps = 3/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G  + PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGK 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS + F+   F Y+ L  RLRELSFLNS V I L D R  E +     
Sbjct: 61  T-DTTGTKIRFWPSEETFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+R+K P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVQHLNRNKTPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G RSALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDIAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|269799106|gb|ACZ43831.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799108|gb|ACZ43832.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799124|gb|ACZ43840.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 374

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/376 (55%), Positives = 278/376 (73%), Gaps = 4/376 (1%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSG
Sbjct: 1   GHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F PS
Sbjct: 61  GLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ 
Sbjct: 120 HETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNV 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 239 RTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 298

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 299 EQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 358

Query: 417 CSERDPKKSELFLVEG 432
           C E+DP  SEL++VEG
Sbjct: 359 CQEKDPALSELYIVEG 374


>gi|159895006|gb|ABX09849.1| DNA gyrase beta subunit [Vibrio parahaemolyticus]
          Length = 400

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 241/402 (59%), Positives = 316/402 (78%), Gaps = 3/402 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     
Sbjct: 61  T-DKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|332879895|ref|ZP_08447580.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682106|gb|EGJ55018.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 615

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 181/629 (28%), Positives = 291/629 (46%), Gaps = 54/629 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++   YD DSIQ L  L+ V+ RP MYIG     S    G++ ++ EVLDN+IDE + G 
Sbjct: 1   MEEIRYDEDSIQTLDPLEHVRLRPGMYIGKLGDGSSADDGIYVLLKEVLDNSIDEFIMGA 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V +  D    V D GRGIP            +V+ ++++ GGK++ +++K S GL
Sbjct: 61  GKTIDVKI-SDNKVEVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKKSIGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS+ K+   R+      SF  GI+              GT V F+P   
Sbjct: 112 NGVGTKAVNALSSYFKVESVRDNQTKSASFERGIIKEE-SPIEETQKRRGTSVAFIPDDT 170

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + +   L+   +LN  + I+   ++         + + G++  ++  + ++
Sbjct: 171 IFKNFKFRNEYVVRMLKNYVYLNPGLTINYNGEK--------YYSENGLKDLLTE-NNNE 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +  +   I ++G    ++I         Y E    F N      GGTHL+  + A  + I
Sbjct: 222 EDFLYPIIHLKGEDIEVAIS---HSKTQYSEEYYSFVNGQNTTQGGTHLNAFKEAYVKTI 278

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------R 353
             + +K+             D R+   + LSIK+ +P F SQTK KL S+E+       R
Sbjct: 279 RDFYKKN---------FDPSDVRKSIIAGLSIKVMEPVFESQTKTKLGSTEMGEGMPSVR 329

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDI--- 407
           + +  FV   L  +L ++   A  I++K+++A   R+     R       +K  L     
Sbjct: 330 TYINDFVTRHLDDYLHKNNEVADAILRKIMEAQREREDLAGIRKLAKERAKKANLHNKKL 389

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                 L D  ++   +S LF+ EG+SA GS  + R    QA+  LRGK LN        
Sbjct: 390 NDCRIHLTDTKDKRNLQSTLFITEGNSASGSITKSRDVNTQAVFSLRGKPLNTYGMTKKI 449

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   L  AL          ++ LRY+ I+I TDADVDG HIR LL TFF +  P 
Sbjct: 450 VYENEEFNLLQAALNI-----EDSMDDLRYNNIVIATDADVDGMHIRLLLTTFFLQFFPE 504

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LYI++ PL+ +       Y   EE  +  +       EI  F    G IS ++ 
Sbjct: 505 IIKEGHLYILQTPLFRVRNKNEKIYCYSEEEKQAAIAKLKGKPEITRF-KGLGEISPDEF 563

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
           ++FI + +++D ++ D   + ++      
Sbjct: 564 KDFIGEDIRLDPVMLDKTIHIEQLLDFYM 592



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 28/141 (19%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +L  +    F  +  +     +      +  +    +KI           I  +  K
Sbjct: 489 HIRLLLTTFFLQFFPEIIKE--GHLYILQTPLFRVRNKNEKIYCYSEEEKQAAIAKL--K 544

Query: 733 G-ISMQRYKGLGEMNASQ----------LWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           G   + R+KGLGE++  +          L     +P       V +      + L    M
Sbjct: 545 GKPEITRFKGLGEISPDEFKDFIGEDIRL-----DP-------VMLDKTIHIEQLLDFYM 592

Query: 782 GDEVEPRREFIQENSLPSALD 802
           G     R++FI  N L   +D
Sbjct: 593 GKNTPDRQDFIINN-LKVEID 612


>gi|145631754|ref|ZP_01787515.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|144982615|gb|EDJ90161.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
          Length = 343

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/343 (35%), Positives = 188/343 (54%), Gaps = 7/343 (2%)

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           MLSSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP 
Sbjct: 1   MLSSQEVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPE 60

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G++YI +PPLY + +GK  +Y+KD + +E Y +  +L         +   ++    
Sbjct: 61  LIERGYVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVF 120

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFI 645
              + +   + KLI     ++    ++  +     + E  +E     +       +L   
Sbjct: 121 EKLVAEYNSVQKLIGRLSRHYPAPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAK 180

Query: 646 AEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
             ++ +      ++      + ++     G+   + L    +           + ++   
Sbjct: 181 ETEAHQYSVRTQFNAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGL 240

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
                 +I       +     +++ +    RKG+ +QRYKGLGEMNA QLWETT++P++R
Sbjct: 241 LEEGAYVIRGEKVQPVRNFEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSR 300

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            +L+V I DA  AD LF+ LMGDEVEPRREFI+ N+L + LD+
Sbjct: 301 RMLKVSIKDAVAADQLFTTLMGDEVEPRREFIELNALRANLDV 343


>gi|4588025|gb|AAD25958.1|AF090333_1 gyrase B subunit [Bacillus anthracis]
          Length = 404

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 204/407 (50%), Positives = 289/407 (71%), Gaps = 4/407 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+   YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G
Sbjct: 1   HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              + TGT   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++  
Sbjct: 61  DT-DQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE- 118

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
              +GGI+++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI  
Sbjct: 119 FHCEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK PDP+F  Q
Sbjct: 179 YEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPDPQFEGQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK
Sbjct: 239 TKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPG+LADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+
Sbjct: 299 SALEVSSLPGRLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           AR DK+LS+ E+ T+ITA+GT IG D FDI K RYHK+IIMTDADVD
Sbjct: 359 ARLDKILSNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMTDADVD 404


>gi|42541299|gb|AAS19529.1| DNA gyrase subunit B [Photobacterium profundum SS9]
          Length = 402

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 241/404 (59%), Positives = 312/404 (77%), Gaps = 3/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G I+   + +G+ D PL   G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGFIHHQIYRHGVPDKPLETIGE 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT + F PS   F+   F+Y+ L  RLRELSFLNS V I LID+R  E ++    
Sbjct: 61  T-DKTGTLLRFWPSEGTFTNVVFHYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI AFV++L+R+K P+          R++ I +++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 YEGGIRAFVAHLNRNKTPIHAKVFHFDFEREDGIVVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG+HL+G R ALTR + ++++K   SKK+K S  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGSHLAGFRGALTRTLNTFMDKEGYSKKEKTSTCGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P +AKI+  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESVMGEKLSEFLLENPSDAKIVCGKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|33187295|gb|AAP97510.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 403

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/409 (50%), Positives = 282/409 (68%), Gaps = 6/409 (1%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V
Sbjct: 1   VLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGQVISEFGV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +    
Sbjct: 61  IGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--HE 117

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI 
Sbjct: 118 SFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIK 175

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +++S+K+P+P+F  
Sbjct: 176 TPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEG 235

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR+
Sbjct: 236 QTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRK 295

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE
Sbjct: 296 KESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE 355

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           +AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG
Sbjct: 356 KARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDG 403


>gi|110612655|gb|ABG78290.1| GyrB [uncultured bacterium]
          Length = 400

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 251/402 (62%), Positives = 310/402 (77%), Gaps = 2/402 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS  L L+IKR   IYE  +I+G    PL +TG A 
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSEQLHLKIKRNNKIYEQHYIHGEPQAPLAITGDA- 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + TGT + F PS++ F+  +F+YD L  RLRELSFLNS + I+L D+R  E    T  Y 
Sbjct: 60  DTTGTSIWFKPSANTFNNIEFHYDILAKRLRELSFLNSGICINLNDERDAEKH-DTFLYN 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI AFV +L+R+K P++     +Q  +D I IDL+M+ N+ Y EN+ CFTNNIPQKDGG
Sbjct: 119 GGISAFVEHLNRNKTPIIPMIFSMQAEKDGIGIDLSMQRNNTYQENLYCFTNNIPQKDGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G RSALTR + +Y+E    +KK K +  GDD REG T+VLS+K+PDP+FSSQTK+K
Sbjct: 179 THLAGFRSALTRTLNNYIENEGYAKKAKITTTGDDAREGLTAVLSVKVPDPKFSSQTKDK 238

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VES V +  + +L E+P  AKIIV K++DA+  R+AARRARD+TRRKG LD
Sbjct: 239 LVSSEVKSAVESAVAEKFNDFLLENPQVAKIIVGKMIDAARAREAARRARDMTRRKGALD 298

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFD
Sbjct: 299 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFD 358

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           KML+SQE+ TLITALG GIG D +D +K+RYH+IIIMTDADV
Sbjct: 359 KMLASQEVATLITALGCGIGSDEYDPDKVRYHRIIIMTDADV 400


>gi|139438115|ref|ZP_01771668.1| Hypothetical protein COLAER_00656 [Collinsella aerofaciens ATCC
           25986]
 gi|133776312|gb|EBA40132.1| Hypothetical protein COLAER_00656 [Collinsella aerofaciens ATCC
           25986]
          Length = 665

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 179/673 (26%), Positives = 307/673 (45%), Gaps = 39/673 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N  N  Y  DSI+ LK  + V+ RP++  G  DG  G  H  +E+L NA+DE+ +GY
Sbjct: 1   MAKNTAN--YGNDSIRQLKDEERVRLRPAVIFGS-DGLDGCAHAAFEILSNAVDEARQGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVS 117
             +IT+T   DGS  V DNGRG P D +  E     E++   L+AGGK+N      Y  S
Sbjct: 58  GKLITLTAFRDGSIQVEDNGRGCPLDWNPSEKRFNWELVFCELYAGGKYNNNQGGDYDFS 117

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF----INGILDNPLVVTGSAGNDTGTEV 173
            G +G+G       S ++ + + R+GN Y + F    + G     L +  S  N TGT +
Sbjct: 118 LGTNGLGSCATQYASEYMDVTVWRDGNKYSLHFKKGKVVGAKKKALEIEPSDENRTGTTI 177

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK-RSPEPREITMFYKGGIEAF 232
            + P  ++F+     +D  +  +R  + +N++V   L  +    E  E    Y  GIE +
Sbjct: 178 KWRPDLEVFTSISIPHDWYRETMRRQAVVNANVTFRLRIEGDDGEFSEEDFCYPKGIEDY 237

Query: 233 VSYLDRHKKPLMQSPIRIQGSR----------DNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           V          +  P  I+  R           N+ I   M ++  +      + N+   
Sbjct: 238 VLEKVG--TDYLTEPFFIEADRRGRDREDLPDYNVKITACMCFSRTFMMQ-EYYHNSSWL 294

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           ++GG+     RSALT  I +Y+++     K++  +   D ++    V +       + +Q
Sbjct: 295 ENGGSPEKAARSALTSAIDAYIKQQGKYNKNESGIKWQDVQDCLVLVTNCFSTQTSYENQ 354

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTR 400
           TK+ + +  ++  + +F  + LS +L E+   A  I+++VL     R+ A + R    T 
Sbjct: 355 TKKAINNRFIQQAMTAFFKERLSTYLIENKDAANKIMEQVLINKRSRENAEKTRQSIKTN 414

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
            +   D+A+   K  DC  +D  + E+++VEGDSA G+ +  R  E Q ++P+RGKILN 
Sbjct: 415 LQQKTDMANRVQKFIDCRSKDKNRREIYIVEGDSAAGAIRTSRDAEFQGVMPVRGKILNC 474

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDS--------FDINKLRYHKIIIMTDADVDGAH 512
            +  + ++  S  I  L+  LG G+            FD++ L ++K+II TDADVDG H
Sbjct: 475 LKEDYPRIFKSDIIMDLMRVLGCGVEIKDKRIKNLGAFDLDNLNWNKVIICTDADVDGYH 534

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IRTL+LT  +R +P+LI  G++YI + PLY I   +   +   E      L      +  
Sbjct: 535 IRTLVLTMLYRLVPTLIDEGYVYIAESPLYEINCKEKTYFAYTELEKNGILKEIGDQKCS 594

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                  G    + +         ++   +       +   +   +  +     +     
Sbjct: 595 INRSKGLGENDPDMMW-----LTTMNPETRRLIKVEPEDVTKMETMFNLLLGNDEAGRKR 649

Query: 633 SLASKLANRLNFI 645
            ++      L+ +
Sbjct: 650 HISEHGKEYLDQL 662



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 112/309 (36%), Gaps = 35/309 (11%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I+N F+       +      S   ++++++    +    +++      + 
Sbjct: 349 TSYENQTKKAINNRFIQQAMTAFFK--ERLSTYLIENKDAANKIMEQVLINKRSRENAEK 406

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDK---TFIEQAVISGVFNCESDQEINVSLA 635
                K +L+   D A ++ K I     + ++     +E    +G      D E    + 
Sbjct: 407 TRQSIKTNLQQKTDMANRVQKFIDCRSKDKNRREIYIVEGDSAAGAIRTSRDAEF-QGVM 465

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIFSF----- 685
                 LN + E   + +   I    + V     +   + ++     +  ++        
Sbjct: 466 PVRGKILNCLKEDYPRIFKSDIIMDLMRVLGCGVEIKDKRIKNLGAFDLDNLNWNKVIIC 525

Query: 686 --------------GSKYKRIFSNRIEENY-----LTILSLICNGDKIKITGPCSLLDTI 726
                          +   R+    I+E Y       +  + C                +
Sbjct: 526 TDADVDGYHIRTLVLTMLYRLVPTLIDEGYVYIAESPLYEINCKEKTYFAYTELEKNGIL 585

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG +  S+ R KGLGE +   +W TT+NP+TR L++V+  D ++ + +F+ L+G++  
Sbjct: 586 KEIGDQKCSINRSKGLGENDPDMMWLTTMNPETRRLIKVEPEDVTKMETMFNLLLGNDEA 645

Query: 787 PRREFIQEN 795
            R+  I E+
Sbjct: 646 GRKRHISEH 654


>gi|119221379|gb|ABL61893.1| GyrB [uncultured bacterium]
          Length = 416

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 242/411 (58%), Positives = 315/411 (76%), Gaps = 3/411 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GG+F+  +YKVSGGLHGVGVSVVNALS  L+LRI R+G ++   + +G    P+   G A
Sbjct: 9   GGEFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQAPIAR-GDA 67

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               G+ + F PS  +F+   F+++ +  RLREL+FLNS V I+L+D+R+   RE    Y
Sbjct: 68  SRKHGSTIRFKPSPQVFADTHFHFEIIAKRLRELAFLNSGVHITLLDERA--SREEIFHY 125

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI AFV +L+R K  +  S I + G RD I ++ A++WN+GY+E VLCFTNNIPQ DG
Sbjct: 126 EGGIRAFVEHLNRSKTAIHPSVITLTGERDGIVVEAALQWNEGYNEAVLCFTNNIPQADG 185

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R ALTR +  Y+E+     K K +V G+D REG T+VLS+K+PDP+FSSQTKE
Sbjct: 186 GTHLAGFRGALTRTLNQYMEREGILAKAKVAVSGEDAREGLTAVLSVKVPDPKFSSQTKE 245

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV+ +VES +++ L+ +L+EHP EA+ I  K+++A+  R+AARRAR+LTRRKG L
Sbjct: 246 KLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRARELTRRKGAL 305

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA+LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R +QAILPL+GKILNVERARF
Sbjct: 306 DIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARF 365

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           D+ML S EIGTLITALGTGIG + FD+ KLRYH+++IMTDADVDG+HIR  
Sbjct: 366 DRMLLSDEIGTLITALGTGIGVEDFDVAKLRYHRVVIMTDADVDGSHIRPC 416


>gi|33186727|emb|CAE12277.1| gyrase B subunit [Vibrio splendidus]
          Length = 403

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 247/405 (60%), Positives = 312/405 (77%), Gaps = 3/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKFN  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFNDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFE 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI+A V +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 YEGGIQAIVEHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HL+G R ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQT
Sbjct: 179 DGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADV
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADV 403


>gi|110612641|gb|ABG78283.1| GyrB [uncultured bacterium]
          Length = 405

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 216/406 (53%), Positives = 289/406 (71%), Gaps = 5/406 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF++ +YKVSGGLHGVG+S VNALS  L + + + G  YEM F  G + + L   GSA 
Sbjct: 1   GKFDKNTYKVSGGLHGVGISCVNALSKKLHVDVFQSGKHYEMEFARGKVAHLLKEVGSA- 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            +TGT VTF P+  IFSV  F+YD L  RLREL+FLN  ++I   D+R  E +E    Y+
Sbjct: 60  QNTGTRVTFWPNETIFSVTVFDYDILLKRLRELAFLNRGIKIVFRDERDTEHKEQVFCYE 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRI----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           GG+ +FVS+L+ +K+PL   PI +    +G    I  ++AM+WN+ Y E++  + NNI  
Sbjct: 120 GGLVSFVSFLNENKEPLFSKPIYMHGVKEGHDGPIDFEVAMQWNNTYSESIYSYVNNIST 179

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           + GGTHL+G  +ALTR + SY++     K DK SV GDD REG T+V+S+K+P+P+F  Q
Sbjct: 180 RQGGTHLTGFSTALTRVLNSYIKNHQLLKSDKISVSGDDMREGLTAVISVKVPNPQFEGQ 239

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK++L +S+V SVV+  V + L+ +LEE+P  AK IV K + A+  RDAAR+AR+LT RK
Sbjct: 240 TKQRLGNSDVASVVQQIVGEELAVFLEENPSIAKTIVDKAILAAQARDAARKARELTLRK 299

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             LD A LPGKL DC E+DP   E+++VEGDSAGGSAK GR R  QAILP+RGKILNVE+
Sbjct: 300 TALDSARLPGKLTDCQEKDPAVCEIYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEK 359

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AR +K+L +QE+G +I+A G GIG+D+F+I KLRYHKIIIMTDADV
Sbjct: 360 ARLEKILQNQEVGAMISAFGCGIGKDNFNIEKLRYHKIIIMTDADV 405


>gi|33187345|gb|AAP97535.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 402

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 203/408 (49%), Positives = 279/408 (68%), Gaps = 6/408 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI   V+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQXVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +   ++    + GDD REG  +++S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASVREKDNKITGDDVREGLIAIVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADV
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADV 402


>gi|148536438|gb|ABQ85771.1| DNA gyrase subunit B [Vibrio mediterranei]
          Length = 400

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 244/402 (60%), Positives = 314/402 (78%), Gaps = 3/402 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G  + PL V G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSKKVTLTIHRGGQIHTQTYHHGEPEAPLKVIGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     +
Sbjct: 61  -DKTGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFMF 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+D
Sbjct: 119 EGGIQAFVEHLNTNKTPIIQKIFHFDNERDDGITVEVAMQWNDGYQENIYCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK
Sbjct: 179 GGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVESAMGEKLSEFLVENPGEAKIVCTKIIDAARARDAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 299 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           FDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 400


>gi|198042688|gb|ACH81169.1| GyrB [Pseudoalteromonas sp. UST050418-010]
          Length = 404

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 242/406 (59%), Positives = 314/406 (77%), Gaps = 6/406 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  SYKVSGG HGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL 
Sbjct: 1   TVLHAGGKFDDNSYKVSGGFHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLA 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E + 
Sbjct: 61  VIGDSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKS 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTN 278
               Y+GGI+AFV Y++R+K P+ +        R    IS++++M+WND Y EN+ CFTN
Sbjct: 119 DHFKYEGGIQAFVEYINRNKTPIHKGVFHFTHERVEDGISVEVSMQWNDAYQENIYCFTN 178

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPD 336
           NIPQ+DGGTHL+G RSALTR + +++EK   +KK K   +  GDD REG T+V+S+K+PD
Sbjct: 179 NIPQRDGGTHLAGFRSALTRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTK+KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DAS  R+AAR+AR
Sbjct: 239 PKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GK
Sbjct: 299 EMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++  KLRYH+III
Sbjct: 359 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIII 404


>gi|328349771|emb|CBY89193.1| GyrB protein [Flavobacterium sp. R-40838]
          Length = 430

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 201/430 (46%), Positives = 284/430 (66%), Gaps = 11/430 (2%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNI 145
           +HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G +
Sbjct: 1   IHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKV 60

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204
           YE  +  G    P+ V G      GT VTF P   IF+   D++YDTL  R+RELS+LN 
Sbjct: 61  YEQEYEKGKALYPVKVIGETS-KRGTIVTFYPDPSIFTQTVDYSYDTLSARMRELSYLNK 119

Query: 205 SVQISLIDKRSPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
            + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I ++
Sbjct: 120 GITITFTDKREVDKDGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDSEKGEIPVE 179

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GD
Sbjct: 180 VALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFDISGD 239

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +A+IIV+
Sbjct: 240 DFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARIIVQ 299

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AK
Sbjct: 300 KVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAK 359

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINKLR 496
           QGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +      +I+KLR
Sbjct: 360 QGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALNISKLR 419

Query: 497 YHKIIIMTDA 506
           YHK+IIM DA
Sbjct: 420 YHKVIIMCDA 429


>gi|33187305|gb|AAP97515.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 402

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/408 (50%), Positives = 281/408 (68%), Gaps = 6/408 (1%)

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V 
Sbjct: 1   LHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVI 60

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
           G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +    +
Sbjct: 61  GKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--HES 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI  
Sbjct: 118 FHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKT 175

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            DGGTH +G R  LTR I+ Y+E +  +++    + GDD REG  +++S+K+P+P+F  Q
Sbjct: 176 PDGGTHEAGFRMGLTRVISXYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQ 235

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K
Sbjct: 236 TKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKK 295

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 296 ESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEK 355

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG
Sbjct: 356 ARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDG 402


>gi|307939330|gb|ADN95856.1| DNA gyrase B [Hymenobacter actinosclerus]
          Length = 437

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 215/438 (49%), Positives = 297/438 (67%), Gaps = 19/438 (4%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGGKF++ SYKVSGGLHGVGVS VNALS  LK+ ++R G +YE  +  G    
Sbjct: 1   LIMTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSEDLKVTVRRNGKVYEQEYKIGAPQY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----- 212
           P+   G   ++ GT+V FLP + IF+   + Y T+  RLRELSFLNS ++++L D     
Sbjct: 61  PVREIG-TTDEHGTQVEFLPDASIFTEHIYKYATIASRLRELSFLNSGIRLTLTDRREPG 119

Query: 213 KRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           +   E R    +  GG+  FV Y     +  LM +PI +   + +  +++A+++ND Y E
Sbjct: 120 ENGAEFRGEEFYSTGGLAEFVQYLDGTERHALMPAPIHVISEKGSTPVEVALQYNDSYQE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  + NNI   +GGTH++G RSALTR + +Y +KS   +K K  + G+D REG T+V+S
Sbjct: 180 NIFSYVNNINTHEGGTHVAGFRSALTRTLKAYADKSGKLEKAKVEISGEDFREGLTAVIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++EV   V + V + L+ +LEE+P EA IIV+KV+ A+  R A
Sbjct: 240 VKVQEPQFEGQTKTKLGNNEVNGAVNTVVGEILAQYLEENPKEAGIIVEKVILAAKARIA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++ +RK VL   SLPGKLADCSE DP+  E++LVEGDSAGG+AKQGR+R  QAIL
Sbjct: 300 ARKAREMVQRKSVLGSTSLPGKLADCSESDPEICEIYLVEGDSAGGTAKQGRNRAFQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF------------DINKLRYHK 499
           PLRGKILNVE+A+  ++L ++EI  +ITALG   G  +             +INKLRYHK
Sbjct: 360 PLRGKILNVEKAQEHRILENEEIRNMITALGVSFGVAADPEKGIEADSKALNINKLRYHK 419

Query: 500 IIIMTDADVDGAHIRTLL 517
           +IIMTDADVDG+HIRTL+
Sbjct: 420 VIIMTDADVDGSHIRTLV 437


>gi|17367214|sp|Q9X3Y3|GYRB_BACCE RecName: Full=DNA gyrase subunit B
 gi|4588022|gb|AAD25955.1|AF090330_1 gyrase B subunit [Bacillus cereus]
          Length = 404

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 205/407 (50%), Positives = 291/407 (71%), Gaps = 4/407 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+   YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G
Sbjct: 1   HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              + TGT   F P  +IF     +++DTL  R+REL+FLN ++++++ DKR  + ++  
Sbjct: 61  DT-DQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKRERKQKKE- 118

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI+++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI  
Sbjct: 119 FHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  Q
Sbjct: 179 YEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK
Sbjct: 239 TKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+
Sbjct: 299 SALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           AR DK+LS+ E+ T+ITA+GT IG D FDI K RYHK+IIMTDADVD
Sbjct: 359 ARLDKILSNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMTDADVD 404


>gi|2196802|gb|AAB80818.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 418

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 249/422 (59%), Positives = 322/422 (76%), Gaps = 5/422 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHA  KF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAFRKFDHNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLV SEV++ VE  + + L+ +L E+P +A++ V K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVFSEVKTAVEQTMGEKLNDYLLENPADAELFVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML SQE+ TLITALG GIG+D ++ +K RYHKIIIMTDA VDG+HI T
Sbjct: 358 KILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYHKIIIMTDA-VDGSHILT 416

Query: 516 LL 517
           LL
Sbjct: 417 LL 418


>gi|239735459|dbj|BAH70496.1| gyrase B subunit [Cardinium endosymbiont of Culicoides ohmorii]
          Length = 478

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 224/458 (48%), Positives = 312/458 (68%), Gaps = 9/458 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           + SYK+SGGLHGVG+S VNALS  L+  + R+G IY+  +  GI   P+   G   N  G
Sbjct: 1   KDSYKISGGLHGVGISCVNALSDRLEAIVYRDGRIYKQEYAKGIPLYPVKEMGET-NLRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYK 226
           T + F P   IF+   +N  T+ +RL+EL++LN  ++++L D R  +    P     + +
Sbjct: 60  TTIHFAPDHSIFTTTVYNLHTITNRLQELAYLNVGLKMTLKDLREKDDQGNPMHQAFYSE 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+  FVSYLD  K+ +M +PI ++G ++++ + +AM +N GY E V+ + NNI   +GG
Sbjct: 120 GGLREFVSYLDSTKESIMPAPIFVEGEKNDVVVQVAMTYNTGYSETVVSYVNNINTVEGG 179

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H++G R ALTR + SY +KS   +K K  +IGDD REG T+V+S+K+ +P+F  QTK K
Sbjct: 180 MHVTGFRRALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVVSVKVAEPQFEGQTKTK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  VE+ V + L  +LEEHP EAK+IV KV+ A+  R AAR+AR++ +RK VL 
Sbjct: 240 LGNAEVQGAVETCVAEVLHYYLEEHPKEAKLIVAKVIVAAQARQAARKAREMVQRKNVLT 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            +SLPGKLADCSE DP   ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  
Sbjct: 300 NSSLPGKLADCSENDPTLCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQVY 359

Query: 467 KMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           K+  ++++  +ITALG  IG +       ++KLRYHKI+IMTDADVDG+HIRTL+LTFFF
Sbjct: 360 KIYDNEQVRNMITALGIVIGTEGDDKAVHLDKLRYHKIVIMTDADVDGSHIRTLILTFFF 419

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           R + S+I  G+LYI  PPLY + R K  QY   E   +
Sbjct: 420 RYLRSIIEKGYLYIASPPLYLVKRDKEAQYCWTESEKD 457


>gi|110264849|gb|ABG57000.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 401

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 240/403 (59%), Positives = 313/403 (77%), Gaps = 4/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++   
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 MYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTD 401


>gi|307939338|gb|ADN95860.1| DNA gyrase B [Hymenobacter xinjiangensis]
          Length = 437

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 212/438 (48%), Positives = 289/438 (65%), Gaps = 19/438 (4%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGG F++ SYKVSGGLHGVGVS VNALS  LK+ ++R G +Y+  +  G    
Sbjct: 1   LIMTVLHAGGXFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGKVYQQEYKIGAPQY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----- 212
           P+   G    + GT+V FLP   IFS   + Y T+  RLREL++LN  ++I+L D     
Sbjct: 61  PVKEIGETE-EHGTQVEFLPDDTIFSESVYKYATIASRLRELAYLNRGIRITLTDRREPG 119

Query: 213 KRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           +   E      F  GG+  FV Y     +  LM +PI +   + +  +++A+++ND Y E
Sbjct: 120 ENGAEFLGEEFFSTGGLSEFVQYLDGSERHALMPAPIHVISEKGSTPVEVALQYNDSYQE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  + NNI   +GGTH++G RSALTR + +Y +KS   +K K  + G+D REG T+V+S
Sbjct: 180 NIFSYVNNINTHEGGTHVAGFRSALTRTLKAYADKSGKLEKAKVEISGEDFREGLTAVIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++EV   V + V + LS +LEE+P EA IIV+KV+ A+  R A
Sbjct: 240 VKVQEPQFEGQTKTKLGNNEVSGAVNTVVGEILSQYLEENPKEAGIIVEKVILAAKARIA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++ +RK VL   SLPGKLADCSE DP+  E++LVEGDSAGG+AKQGR+R  QAIL
Sbjct: 300 ARKAREMVQRKSVLGSTSLPGKLADCSESDPEICEIYLVEGDSAGGTAKQGRNRAFQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN------------KLRYHK 499
           PLRGKILNVE+A+  ++L ++EI  +ITALG   G  +                KLRYHK
Sbjct: 360 PLRGKILNVEKAQEHRILENEEIRNMITALGVSFGVQADVEKGIEADAKALNTAKLRYHK 419

Query: 500 IIIMTDADVDGAHIRTLL 517
           +IIMTDADVDG+HIRTLL
Sbjct: 420 VIIMTDADVDGSHIRTLL 437


>gi|33187285|gb|AAP97505.1| DNA gyrase subunit B [Campylobacter coli]
          Length = 403

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 208/408 (50%), Positives = 281/408 (68%), Gaps = 6/408 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 2   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLIATVERXGEIYRQEFSEGKVISEFG 61

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+YD L  R REL++LN  + I+  D R  +   
Sbjct: 62  VIGKSK-KTGTTIEFWPDDTIFEVTEFDYDILAKRFRELAYLNPKITINFKDNRVGKS-- 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FVS  D +KK  +  PI      +++++++A+ +ND Y EN+L F NNI
Sbjct: 119 ESFHFEGGISQFVS--DLNKKEALTKPIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 176

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +V+++K+P+P+F 
Sbjct: 177 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVNVKVPEPQFE 236

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL SS VR +V     + LS + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 237 GQTKGKLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 296

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 297 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 356

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           E+AR DK+  S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADV
Sbjct: 357 EKARLDKIXKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADV 403


>gi|253826386|gb|ACT36496.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 220/408 (53%), Positives = 296/408 (72%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L++++KREG +Y+  +  G     +   G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +   TGT+VTF P  +IF+    +++DTLQ R+REL+FLN  ++I L D+R+      T
Sbjct: 61  ESEM-TGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTD--ISQT 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GG  +FV +L+++++P+ Q PI ++G +D+I ++ A+++ND Y EN+  F NNI  
Sbjct: 118 FIYEGGTISFVEHLNQNREPVHQPPIYVEGEKDHIQVEDALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR +  Y  K    K+   ++ GDD REG T+++S+K+PDP+F  Q
Sbjct: 178 HEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKIPDPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES   + L  +L+E+P  AK IV+K + A   R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQG  R  QAILPLRGKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGHDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           AR DK+LS  EI  +ITALGTGIG+DS DI+K RYHKIIIMTDADVDG
Sbjct: 358 ARLDKILSIAEIRAIITALGTGIGEDS-DISKARYHKIIIMTDADVDG 404


>gi|269799074|gb|ACZ43815.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799092|gb|ACZ43824.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 375

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 212/377 (56%), Positives = 279/377 (74%), Gaps = 4/377 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVS
Sbjct: 1   AGHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F P
Sbjct: 61  GGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWP 119

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+
Sbjct: 120 SHETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLN 178

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R AL
Sbjct: 179 VNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGAL 238

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 239 TRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 298

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLA
Sbjct: 299 VEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLA 358

Query: 416 DCSERDPKKSELFLVEG 432
           DC E+DP  SEL++VEG
Sbjct: 359 DCQEKDPALSELYIVEG 375


>gi|110264823|gb|ABG56987.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 401

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 240/403 (59%), Positives = 313/403 (77%), Gaps = 4/403 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++    
Sbjct: 61  -DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+
Sbjct: 119 YEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|295979441|dbj|BAJ07393.1| DNA gyrase subunit B [Rhodoplanes elegans]
          Length = 306

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 198/306 (64%), Positives = 244/306 (79%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L GYA  ++VTLN DGS TV D+GRGIPT +HK EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGYAREVSVTLNPDGSVTVRDDGRGIPTAIHKGEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSSWLKLRI R+G+ + M F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSWLKLRIWRDGHEHFMEFRHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G AG   GTEVTFL S++ F++ ++++ TL+HRLREL+FLNS V+I L DK
Sbjct: 121 EAVAPLAVVGDAGGQRGTEVTFLASTETFTMTEYDWGTLEHRLRELAFLNSGVRIVLTDK 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y+GG+EAFV ++DR+KKPL+  PI I+ +RD I ++ A+ WNDGYHE V
Sbjct: 181 RHAVEKREEMHYEGGVEAFVRFIDRNKKPLVVDPIVIKSARDGIEVECALWWNDGYHETV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQIT Y E    SKK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQITGYAESGGVSKKEKVALTGDDCREGLTAVLSVK 300

Query: 334 MPDPRF 339
           +PDP+F
Sbjct: 301 VPDPKF 306


>gi|198250523|gb|ACH85243.1| DNA gyrase subunit B [Paenibacillus apiarius]
          Length = 404

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 215/408 (52%), Positives = 295/408 (72%), Gaps = 5/408 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  L + +KREG+I++  +  G+    L V G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSEMLLVTVKREGHIHQQEYRRGVPQADLKVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
               +TGT + F P  D+F+    + YD L  R+REL+FLN  +++ L D+R+ + +   
Sbjct: 61  ETA-ETGTTIKFKPDPDVFTETTEYEYDILLSRIRELAFLNKGIEMVLSDERTGQSQT-- 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI  FV YL+R+++ + + PI ++GS+DNI+ ++A+++ND Y EN+  F NNI  
Sbjct: 118 FKYEGGIMEFVDYLNRNREKMHEPPIYVEGSKDNITCEIALQYNDSYTENIYSFANNIHT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR I  Y  K+   K    ++ GDD REG T+++S+K+P+P+F  Q
Sbjct: 178 HEGGTHESGFKSALTRIINDYARKTNLVKDSTSNLSGDDVREGLTAIISVKIPEPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VES  ++    +L E+P  ++ +V+K L AS  R+AARRAR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESVFSEKFMDFLNENPAISRKVVEKGLQASRAREAARRARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +D  + ELF+VEGDSAGGSAKQGR R  QAILPL+GKILNVE+
Sbjct: 298 SALEVSSLPGKLADCSSKDAAQCELFIVEGDSAGGSAKQGRDRHFQAILPLKGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           +R D++LS+ EI  +ITALGT IG+D FD+++ RYHKIIIMTDADVDG
Sbjct: 358 SRLDRILSNAEIRAIITALGTSIGED-FDLSRARYHKIIIMTDADVDG 404


>gi|261265513|gb|ACX55941.1| DNA gyrase subunit B [Paenibacillus sp. YC54]
          Length = 406

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 222/410 (54%), Positives = 294/410 (71%), Gaps = 7/410 (1%)

Query: 104 HAGGKFNQKS--YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           HAGGKF      YKVSGGLHGVG+SVVNALS  L +++KREG +++  F  G+    L V
Sbjct: 1   HAGGKFGGDESGYKVSGGLHGVGISVVNALSKKLVVQVKREGKVHQQEFNCGVPQYDLKV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G +  +TGT+VTF P  +IF     +++DTLQ R+REL+FLN  V+I L D+RS     
Sbjct: 61  IGESE-ETGTQVTFWPDEEIFKETTEYDFDTLQSRIRELAFLNKGVEIVLTDERSDVSTS 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV +L+R ++ L   PI ++G +DNI++++A+++ND Y EN+  F NNI
Sbjct: 120 --FIYEGGIVSFVEHLNRTREALHTPPIFVEGEKDNITVEVALQYNDTYAENIYSFANNI 177

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH SG RSALTR +  Y  K    K  + ++ GDD REG T+++S+K+P+P+F 
Sbjct: 178 NTHEGGTHESGFRSALTRILNEYARKFNSIKDSEANLSGDDVREGLTAIISVKIPEPQFE 237

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SEVR +VES  ++ L  +L E+P  AK I++K + A   R+AAR+AR+LTR
Sbjct: 238 GQTKTKLGNSEVRGIVESLFSEKLEEFLVENPSIAKKIIEKGVQAQRAREAARKARELTR 297

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQG  R  QAILPLRGKILNV
Sbjct: 298 RKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGCDRHFQAILPLRGKILNV 357

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+LS+ EI  +ITALGTGIG D FDI K RYHK+IIMTDADVDG
Sbjct: 358 EKARLDKILSNAEIRAIITALGTGIG-DDFDITKARYHKVIIMTDADVDG 406


>gi|119369948|gb|ABL67988.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 422

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/423 (49%), Positives = 279/423 (65%), Gaps = 3/423 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-IL 155
           EVIMT LHAGGKF    YKVSGGLHGVGVSVVNALSS L L I R+GN +++ F +G   
Sbjct: 1   EVIMTVLHAGGKFGGSGYKVSGGLHGVGVSVVNALSSSLTLEIDRDGNHHQLEFRDGGKP 60

Query: 156 DNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              L VTG A    TGT VTF+P   IF   +F   T+  RL+ ++FLN  ++I   D+R
Sbjct: 61  QGGLRVTGPAPGGRTGTTVTFVPDPTIFDEVEFRAQTVTERLQIMAFLNRGLEIRFTDQR 120

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           +    +    Y GGI  +V +L+  K+ L +     + S +   +++A +WN GY+E++ 
Sbjct: 121 AGRAAKEVFKYSGGIVDYVRHLNNTKESLFRKVGYYEQSEEGQEVEVAFQWNTGYYESIH 180

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N I   +GG H  G R A+T  I  Y  K    K+ + ++ G+D REG T+++S+++
Sbjct: 181 SFANGIATIEGGMHEEGFRKAITNVINRYARKRNLLKEKEENLKGEDIREGLTAIVSVRL 240

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            DP+F  QTK KL +  +RS+VE   N+ L+ WLEE+P E   +V K + AS  R AA+ 
Sbjct: 241 ADPQFEGQTKGKLGNVSIRSLVERATNEKLADWLEENPREGGQVVAKAIQASRSRMAAQH 300

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARDLTRRK  LD A LPGKL DCS RDP++ ELF+VEG+SAGGSAK  R    QAILP+R
Sbjct: 301 ARDLTRRKNALDGAGLPGKLVDCSSRDPRECELFIVEGNSAGGSAKDARDPRTQAILPIR 360

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+AR DK+L + EI  LI A+G G+ +  FD++K+RY KII++TDADVDG+HIR
Sbjct: 361 GKILNVEKARSDKILKNTEIQALIAAIGAGV-EADFDVSKVRYDKIILLTDADVDGSHIR 419

Query: 515 TLL 517
           TLL
Sbjct: 420 TLL 422


>gi|146300228|ref|YP_001194819.1| DNA topoisomerase IV subunit B [Flavobacterium johnsoniae UW101]
 gi|146154646|gb|ABQ05500.1| DNA topoisomerase, type IIA, subunit B, region 2 domain protein
           [Flavobacterium johnsoniae UW101]
          Length = 622

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 185/657 (28%), Positives = 292/657 (44%), Gaps = 58/657 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++ + Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN IDE + G 
Sbjct: 2   LEQNQYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSPDDGIYILLKEVLDNCIDEFVMGS 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+  D + +V D GRGIP            +V+ ++++ GGK++ K+++ S GL
Sbjct: 62  GKTIEVTI-KDKTVSVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSKAFQKSVGL 112

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALS++ ++   R+       F  G L +   V        GT+VTF P   
Sbjct: 113 NGVGTKAVNALSTYFRVESVRDDKQKAAEFSGGNLVSEEDVI-DTTKRKGTKVTFTPDET 171

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + +   ++   +LN+ + I    ++         + + G+   +      +
Sbjct: 172 IFKNYKFRLEYVIKMVKNYCYLNNGLTIIFNGEK--------YYSENGLRDLLEETISEE 223

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
                          +I + L       Y E    F N      GGTHL+  R A+ + I
Sbjct: 224 DLEYPIIHL---KEHDIEVALTHS-KTQYSEEYHSFVNGQNTTQGGTHLAAYREAVVKTI 279

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------- 352
             +  K+F +          D R+   S +SIK+ +P F SQTK KL S+++        
Sbjct: 280 REFYNKNFEAS---------DVRKSIVSAISIKVMEPVFESQTKTKLGSTDMGSDDGTPA 330

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD---LTRRKGVLD 406
              R+ V  F+   L  +L ++P  A  +++K+L A   R      R       +K  L 
Sbjct: 331 VSVRTFVNDFIKTKLDNYLHKNPTTADALLRKILQAERERKELSGIRKLATDRAKKANLH 390

Query: 407 IA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                     L D       +S LF+ EGDSA GS  + R    QA+  LRGK LN    
Sbjct: 391 NKKLRDCRAHLPDTKNPRNLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGM 450

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL    G     + KLRY+ I+I TDADVDG HIR LL+TFF +
Sbjct: 451 TKKIVYENEEFNLLQAALDIEDG-----LEKLRYNNIVIATDADVDGMHIRLLLITFFLQ 505

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI  G LYI++ PL+ +   K   Y   +E  +D +       EI  F    G IS
Sbjct: 506 FFPELIKEGHLYILQTPLFRVRNKKETIYCYSDEERKDAIEKLKPKPEITRF-KGLGEIS 564

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            ++ +NFI D +++D ++ D   + ++        +     E   +       +L  
Sbjct: 565 PDEFKNFIGDTIRLDPVMMDKNTSIEQLLSFYMGKNTPDRQEFIIKNLKVEIDELEE 621



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +L  +    F  +  +     +      +  +    + I         D I  + + 
Sbjct: 494 HIRLLLITFFLQFFPELIKE--GHLYILQTPLFRVRNKKETIYCYSDEERKDAIEKL-KP 550

Query: 733 GISMQRYKGLGEMNASQLW----ETT-LNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
              + R+KGLGE++  +      +T  L+P       V +   +  + L S  MG     
Sbjct: 551 KPEITRFKGLGEISPDEFKNFIGDTIRLDP-------VMMDKNTSIEQLLSFYMGKNTPD 603

Query: 788 RREFIQENSLPSALD 802
           R+EFI +N L   +D
Sbjct: 604 RQEFIIKN-LKVEID 617


>gi|261414958|ref|YP_003248641.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371414|gb|ACX74159.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327568|gb|ADL26769.1| putative DNA topoisomerase IV, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 614

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/617 (26%), Positives = 272/617 (44%), Gaps = 63/617 (10%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLEGY 60
           +  + Y  DSI+ L+  + ++ RP MYIG          G++ ++ E++DN+IDE + G 
Sbjct: 1   MAATKYTEDSIKSLEWHEHIRLRPGMYIGKLGDGQSPDDGIYVLVKEIIDNSIDEFVMGA 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSG 118
              I + ++ D +  V D GRGIP             VI     ++ GGK++ ++++ S 
Sbjct: 61  GKKIEINID-DHAARVRDYGRGIPLGK----------VIDCVSKINTGGKYDSEAFQKSV 109

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG   VNALS+   ++  R+G + +  F  G+L        +     GTE+ F P 
Sbjct: 110 GLNGVGTKAVNALSTKFIVKSYRDGRMKQAEFSRGVLVQDYKEC-ATNEKNGTEIYFEPD 168

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +DIF    F    ++ ++   ++LN+ +Q+ + DK              G+   ++    
Sbjct: 169 ADIFKNYRFLPAYMEEKVWNYAYLNNGLQLVMNDKV--------YTSPNGLLDLLNKHVD 220

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                    I  +G      I+ A    + Y E+   F N      GGTH    R  L +
Sbjct: 221 DSIRY--PVIHFKGKD----IECAFTHGNQYGEHYYSFVNGQHTTQGGTHQQAFREGLVK 274

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS-------E 351
               + +K          +   D R      +S+++ +P F SQTK KL S+       +
Sbjct: 275 GARDHFKK---------DLDPQDVRNCVIGAISVRIQEPVFESQTKTKLGSTTVAPGGAQ 325

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKG 403
           +RS V  +V      +L ++P   K ++ ++      R         A  RA+       
Sbjct: 326 LRSWVVDYVASEFDNFLHKNPETEKALLNRITQNERERKEIAGIKKLANERAKKANLHNR 385

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            L        L D      ++S +F+ EGDSA GS  + R+ + QA+  LRGK LN    
Sbjct: 386 KLRD--CKIHLTDVKNALNRESMIFITEGDSASGSITKARNVQTQAVFSLRGKPLNSFGM 443

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL    G     +  LRY K+II TDADVDG HIR LL+TFF +
Sbjct: 444 TKKVVYENEEFNLLQHALDIENG-----LENLRYDKVIIATDADVDGMHIRLLLMTFFLQ 498

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+    LYI++ PL+ +   +  +Y  DE   +        +          G IS
Sbjct: 499 FFPELVEQKHLYILQTPLFRVRNKQVTKYCYDEAERDKAAKEIGKTGLEITRFKGLGEIS 558

Query: 584 KNDLRNFIDDALKIDKL 600
             +   FI++ ++++ +
Sbjct: 559 PEEFGQFINEDMRLETV 575


>gi|281334024|gb|ADA61201.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 405

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 237/408 (58%), Positives = 312/408 (76%), Gaps = 4/408 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  +YKVSGGLHGVGVSVVNALS  L+L I+R   ++E  + +G+   PL   G
Sbjct: 1   HAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
              + +GTEV F PS + FS   F++D L  R+RELSFLNS V I L D+R+ +      
Sbjct: 61  ET-DGSGTEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELF 117

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GG++AFV YL+ +K  + +     +Q   D + +++A++WND ++EN+LCFTNNIPQ
Sbjct: 118 KYEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQ 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQ
Sbjct: 178 RDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRK
Sbjct: 238 TKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+
Sbjct: 298 GALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           ARFDKMLSSQE+GTLITALG GIG++ ++I+KLRYH IIIMTDADVDG
Sbjct: 358 ARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDG 405


>gi|117571421|gb|ABK40095.1| Rep/GyrB/AD fusion protein [Inducible protein expression vector
           pReg Neo]
          Length = 557

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/226 (58%), Positives = 163/226 (72%), Gaps = 4/226 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 134 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 193

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 194 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 253

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 254 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 312

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GG   
Sbjct: 313 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGPCM 356


>gi|307939324|gb|ADN95853.1| DNA gyrase B [Hymenobacter fastidiosus]
          Length = 433

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 216/432 (50%), Positives = 298/432 (68%), Gaps = 15/432 (3%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF++ SYKVSGGLHGVGVS VNALSS LK+ ++R G++YE  +  G+    +
Sbjct: 3   MTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSSDLKVTVRRNGHMYEQEYKIGVPQYAV 62

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
              G    + GTEV FLP + IF+   + Y+T+ +RLRELS+LN  ++I+L D+R  E  
Sbjct: 63  KEIGDTE-EHGTEVEFLPDASIFTESVYKYETVANRLRELSYLNKGIRITLTDRREKEDD 121

Query: 220 ----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
                   F  GG+  FV YLD  +  LM +PI ++  +    +++A+++ND Y E++  
Sbjct: 122 GSFLYEEFFSHGGLSEFVQYLDSGRTVLMPAPIHVESEKGGTPVEVALQYNDSYQEHIFS 181

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH++G RSALTR + +Y +KS   +K K  V+GDD REG T+V+S+K+ 
Sbjct: 182 YVNNINTIEGGTHVAGFRSALTRTLKAYADKSGLLEKAKVEVLGDDFREGLTAVISVKVQ 241

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +S+V   V + V + L+ +L+E+P EA+IIV+KV+ A+  R AAR+A
Sbjct: 242 EPQFEGQTKTKLGNSDVSGAVNTAVGEILNQYLQENPKEARIIVEKVILAAKARVAARKA 301

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++ +RK VL   SLPGKLADCSE DP   EL+LVEGDSAGG+AKQGR+R  QAILPLRG
Sbjct: 302 REMVQRKSVLGSNSLPGKLADCSESDPAICELYLVEGDSAGGTAKQGRNRAFQAILPLRG 361

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----------NKLRYHKIIIMTD 505
           KILNVE+A+  ++  ++EI  +ITALG    + + +           +KLRYHKIIIMTD
Sbjct: 362 KILNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSTTRSLNVDKLRYHKIIIMTD 421

Query: 506 ADVDGAHIRTLL 517
           ADVDG+HIRTLL
Sbjct: 422 ADVDGSHIRTLL 433


>gi|148793360|gb|ABR12744.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 403

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 241/405 (59%), Positives = 314/405 (77%), Gaps = 4/405 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLH VGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHRVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++   
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ
Sbjct: 119 MYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|312271574|gb|ADQ56142.1| DNA gyrase subunit B [Vibrio sp. PS0705-5A3]
          Length = 373

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/375 (55%), Positives = 284/375 (75%), Gaps = 3/375 (0%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I +T++ D S +VSD+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+  SYKVSG
Sbjct: 1   GHCSDIIITIHEDNSVSVSDDGRGIPTEMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  ++L IKR+G I++  + +G+   PL V G    +TGT + F PS
Sbjct: 61  GLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQAPLAVIGKTE-ETGTRIRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+  +F+Y+ L  RLRELSFLNS V I L D+R  E +     ++GGI AFV +L+R
Sbjct: 120 EETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDER-EEDKSDHFMFEGGIRAFVEHLNR 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ Q       +R++ I++++AM+WNDG+ E V CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPIHQKIFYFDHTREDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 RTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +++ LS +L E+P EAKI+  K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC
Sbjct: 299 SAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSELFLVEG 432
            E+DP  SEL++VEG
Sbjct: 359 QEKDPALSELYIVEG 373


>gi|269799104|gb|ACZ43830.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799112|gb|ACZ43834.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799114|gb|ACZ43835.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 373

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 207/375 (55%), Positives = 276/375 (73%), Gaps = 4/375 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+   + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVS
Sbjct: 1   AGHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F P
Sbjct: 61  GGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWP 119

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+
Sbjct: 120 SHETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLN 178

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R AL
Sbjct: 179 VNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGAL 238

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 239 TRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 298

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 299 VEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLA 358

Query: 416 DCSERDPKKSELFLV 430
           DC E+DP  SEL++V
Sbjct: 359 DCQEKDPALSELYIV 373


>gi|269854593|gb|ACZ51343.1| DNA gyrase subunit B [Paenibacillus sp. YC20]
          Length = 406

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 221/410 (53%), Positives = 294/410 (71%), Gaps = 7/410 (1%)

Query: 104 HAGGKFNQKS--YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           HAGGKF      YKVSGGLHGVG+SVVNALS  L +++KREG +++  F  G+    L V
Sbjct: 1   HAGGKFGGDESGYKVSGGLHGVGISVVNALSKKLVVQVKREGKVHQQEFNCGVPQYDLKV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G +  +TGT+VTF P  +IF     +++DTLQ R+REL+FLN  ++I L D+RS     
Sbjct: 61  IGESE-ETGTQVTFWPDEEIFKETTEYDFDTLQSRIRELAFLNKGIEIVLTDERSDVSTS 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI +FV +L+R ++ L   PI ++G +DNI++++A+++ND Y EN+  F NNI
Sbjct: 120 --FIYEGGIVSFVEHLNRTREALHTPPIFVEGEKDNITVEVALQYNDTYAENIYSFANNI 177

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH SG +SALTR +  Y  K    K  + ++ GDD REG T+++S+K+P+P+F 
Sbjct: 178 NTHEGGTHESGFKSALTRILNEYARKFNSIKDSEANLSGDDVREGLTAIISVKIPEPQFE 237

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SEVR +VES  ++ L   L E+P  AK I++K + A   R+AAR+AR+LTR
Sbjct: 238 GQTKTKLGNSEVRGIVESLFSEKLEESLVENPSIAKKIIEKGVQAQRAREAARKARELTR 297

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 298 RKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 357

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+LS+ EI  +ITALGTGIG D FDI K RYHK+IIMTDADVDG
Sbjct: 358 EKARLDKILSNAEIRAIITALGTGIG-DDFDITKARYHKVIIMTDADVDG 406


>gi|328349733|emb|CBY89174.1| GyrB protein [Flavobacterium sp. R-38296]
          Length = 426

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 201/427 (47%), Positives = 280/427 (65%), Gaps = 10/427 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
            D+HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVS VNALS  L+  + REG 
Sbjct: 1   VDIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSDHLRATVFREGK 60

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
           +YE  +  G    P+   G   +  GT VTF P   IF+    ++YDT+  R+RELSFLN
Sbjct: 61  VYEQEYEKGKAMYPVKQIGET-DKRGTMVTFHPDKTIFTQTIEYSYDTIAARMRELSFLN 119

Query: 204 SSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
             + I+L D+R      E        + G++ FV +LD+ ++ ++   I ++  +  I +
Sbjct: 120 KGITITLTDRRDVNDKGEFASEIFHSQEGLKEFVRFLDKGRESIISHVISMEHEKGEIPV 179

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S    K K  + G
Sbjct: 180 EVALVYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADSSGLLDKLKFEITG 239

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ L  +LEE+P +AKIIV
Sbjct: 240 DDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPNDAKIIV 299

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +KV+ A+  R AA++AR++ +RK VL    LPGKL+DCSE+DP K E++LVEGDSAGG+A
Sbjct: 300 QKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTA 359

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINKL 495
           KQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +      +I KL
Sbjct: 360 KQGRDRMFQAILPLRGKILNVEKAMPHKVFENEEIRNIFTALGVTIGTEEDSKALNIEKL 419

Query: 496 RYHKIII 502
           RYHK+II
Sbjct: 420 RYHKVII 426


>gi|159146574|gb|ABW90731.1| DNA gyrase beta subunit [Vibrio vulnificus]
 gi|159146592|gb|ABW90740.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 398

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 241/400 (60%), Positives = 313/400 (78%), Gaps = 3/400 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+ +  ++ +G+ D PL + G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT V F PS++ F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y
Sbjct: 61  E-KTGTTVRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFMY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV++L+R+K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+D
Sbjct: 119 EGGIQAFVTHLNRNKTPIHEKVFHFNAEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R+ALTR + SY++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK
Sbjct: 179 GGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VESF+ D L+ +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 299 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           FDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 398


>gi|159894986|gb|ABX09839.1| DNA gyrase beta subunit [Vibrio sp. B356]
          Length = 399

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 235/401 (58%), Positives = 313/401 (78%), Gaps = 3/401 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  T-DQTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVDHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 399


>gi|328349745|emb|CBY89180.1| GyrB protein [Flavobacterium sp. R-38373]
          Length = 426

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 200/427 (46%), Positives = 277/427 (64%), Gaps = 10/427 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
            D+HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVS VNALS+ L+  + R+G 
Sbjct: 1   VDMHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSNHLRATVFRDGK 60

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLN 203
           +YE  +  G    P+   G   +  GT VTF P   IF+   ++NYDT+  R+RELSFLN
Sbjct: 61  VYEQEYEKGKAQYPVKQIGET-DKRGTMVTFKPDDTIFTQSTEYNYDTIAGRMRELSFLN 119

Query: 204 SSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
             + I+L DKR      E          G++ FV +LD+ ++ ++   I +   +  I +
Sbjct: 120 KGITITLTDKRETDEKGEFVSEIFHSDEGLKEFVRFLDKGREGIISHVISMDHEKGEIPV 179

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S    K K  + G
Sbjct: 180 EVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADSSGLLDKLKFEITG 239

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ L  +LEE+P +AK IV
Sbjct: 240 DDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPNDAKTIV 299

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +KV+ A+  R AA++AR++ +RK VL    LPGKL+DCSE+DP K E++LVEGDSAGG+A
Sbjct: 300 QKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTA 359

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKL 495
           KQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +         KL
Sbjct: 360 KQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALNLEKL 419

Query: 496 RYHKIII 502
           RYHK+II
Sbjct: 420 RYHKVII 426


>gi|269799116|gb|ACZ43836.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 373

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 208/375 (55%), Positives = 277/375 (73%), Gaps = 4/375 (1%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSG
Sbjct: 1   GHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F PS
Sbjct: 61  GLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ 
Sbjct: 120 HETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNV 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 239 RTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 298

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 299 EQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 358

Query: 417 CSERDPKKSELFLVE 431
           C E+DP  SEL++VE
Sbjct: 359 CQEKDPALSELYIVE 373


>gi|328349725|emb|CBY89170.1| GyrB protein [Flavobacterium sp. R-40837]
          Length = 419

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 194/415 (46%), Positives = 272/415 (65%), Gaps = 7/415 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP  +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +
Sbjct: 1   GRGIPVGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATV 60

Query: 140 KR-EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLR 197
              +G +YE  +  G    P+   G      GT VTF P   IF+   D++YDTL  R+R
Sbjct: 61  HSSDGKVYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDQSIFTQTIDYSYDTLSARMR 119

Query: 198 ELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
           ELS+LN  + I+  DKR                 G++ ++ YLD +++P++   I +   
Sbjct: 120 ELSYLNKGITITFTDKRELDKEGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNE 179

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           +  I +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K 
Sbjct: 180 KGEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKL 239

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P 
Sbjct: 240 KFDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPN 299

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +A+IIV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGD
Sbjct: 300 DARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGD 359

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           SAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 360 SAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTIGTE 414


>gi|110264815|gb|ABG56983.1| DNA gyrase beta subunit [Aliivibrio fischeri]
 gi|110264817|gb|ABG56984.1| DNA gyrase beta subunit [Aliivibrio fischeri]
          Length = 400

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 242/402 (60%), Positives = 312/402 (77%), Gaps = 3/402 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G  + PL V G   
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT- 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + TGT++ F PS + F+   F Y+ L  RLRELSFLNS V I L D R  E +     Y+
Sbjct: 60  DTTGTKIRFWPSEETFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFMYE 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           GGI+AFV +L+R+K P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DG
Sbjct: 119 GGIQAFVQHLNRNKTPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G RSALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+
Sbjct: 179 GTHLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKD 238

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG L
Sbjct: 239 KLVSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGAL 298

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARF
Sbjct: 299 DIAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 358

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           DKMLSSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 DKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 400


>gi|148470290|gb|ABQ66092.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 201/423 (47%), Positives = 279/423 (65%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L+L I +EG ++   +  G+  
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSQTLELEIHQEGKLHRQVYHQGVPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G+     GT + F P   I     F +DTL HR REL+FLN  + I  + +   
Sbjct: 61  APLAVVGTTT-LRGTSIRFWPDLSIMETDTFLFDTLAHRFRELAFLNPILTI--VLREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GGI+++  +L+ +KK + +     +        ++A ++ +   +E +L 
Sbjct: 118 SLREETFHFEGGIKSYNEFLNENKKTIHEVLFFRRELPTGAQFEVAFQYQETTDNETILG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  K+GGTH+ G R+ALTR I  +++    +K ++    G+D REG T+V+S+++P
Sbjct: 178 FANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELR--GEDIREGLTAVVSVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL SS V   +E+F+ + +    EE P  AK I  K +  +M R+AAR+A
Sbjct: 236 DPQFEGQTKAKLGSSWVAGAMETFLAEEMQERFEEFPQIAKKIADKGIQTAMAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++L +RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 296 KELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAILPLKG 355

Query: 456 KILNVERA-RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+A   ++ ++  E+  LITA+G G+G + +    LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|301477620|dbj|BAJ12095.1| DNA gyrase subunit beta [Pandoraea sputorum]
          Length = 425

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 242/428 (56%), Positives = 317/428 (74%), Gaps = 15/428 (3%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163
           VSGGLHGVGVS VNALS++LKL ++R+G  + M F  G+              +PL + G
Sbjct: 1   VSGGLHGVGVSCVNALSTYLKLTVRRDGKKHFMEFHQGVPQNRELEVVDGVETSPLKLLG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
              +  GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +      
Sbjct: 61  DT-DKRGTEVHFLADETIFGKVEYHYDILAKRMRELSFLNNGVRIRLTDQRTGKE--DDF 117

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            + GG++ FV Y+++ K  L  +   + G RD I +++AM+WND Y+E VLCFTNNIPQ+
Sbjct: 118 AFGGGVKGFVEYINKSKTVLHPTVFHVMGERDGIGVEVAMQWNDSYNETVLCFTNNIPQR 177

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG+HL+GLR+A+TR I  Y+ +S  +KK K    GDD REG T VLS+K+P+P+FSSQT
Sbjct: 178 DGGSHLTGLRAAMTRVINKYIAESEIAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQT 237

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR+ VE +V   L  +L+E P +AKII  K+++A+  RDAAR+AR++TRRKG
Sbjct: 238 KDKLVSSEVRAPVEEYVAKALEDFLQETPNDAKIICTKIVEAARARDAARKAREMTRRKG 297

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+A
Sbjct: 298 VLDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 357

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           RFDK++SS++I TLITALG GIG+D ++I+KLRYH+IIIMTDADVDGAHIRTLLLTF +R
Sbjct: 358 RFDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFLYR 417

Query: 524 QMPSLIHN 531
           Q+P LI  
Sbjct: 418 QVPELIER 425


>gi|255036527|ref|YP_003087148.1| DNA topoisomerase IV subunit B [Dyadobacter fermentans DSM 18053]
 gi|254949283|gb|ACT93983.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Dyadobacter fermentans DSM 18053]
          Length = 623

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 174/630 (27%), Positives = 273/630 (43%), Gaps = 61/630 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
              N  YD  SI+ L   + ++ RP MYIG     S    G++ ++ EV+DN+IDE + G
Sbjct: 2   ESTNVQYDESSIRSLDWKEHIRLRPGMYIGKLGDGSSVDDGIYVLVKEVVDNSIDEHMMG 61

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVS 117
               I + +  +    V D GRGIP             V+     ++ GGK++  +++ S
Sbjct: 62  NGKTIEIKI-SEHRVEVRDYGRGIPLGK----------VVDCVSKINTGGKYDSGAFQKS 110

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+GVG   VNALSS  K++  R+G      F  G L N     G+     GT V F P
Sbjct: 111 VGLNGVGTKAVNALSSHFKVQSYRDGKTKSAEFNQGALLNESPE-GTTSQRNGTHVAFEP 169

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IF    +    L + +    +LN+ + I+   ++         F + G+   +    
Sbjct: 170 DGTIFKNFRYIPQYLDNMIWNYCYLNAGLTINFNGQK--------YFSQNGLLDLLKSKS 221

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             +       I ++G      I+LAM   + Y E    F N      GGTHL+  R A+ 
Sbjct: 222 DAETLRYP-IIHLKGED----IELAMTHGNQYGEEYYSFVNGQYTTQGGTHLAAFREAVV 276

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL---------V 348
           + +  +  K             +D R      ++I++ +P F SQTK KL          
Sbjct: 277 KAVREHFGK---------DYAPEDIRSSIIGAIAIRVQEPVFESQTKTKLGSNTITPDPN 327

Query: 349 SSEVRSVVESFVNDGLSAWLE---EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           S+ VR+ V  FV + L  +L    E     K  +++           ++  +   +K  L
Sbjct: 328 STTVRTFVNDFVKERLDNFLHMNPESRDALKKRIEQSERERKELAGIKKLANDRAKKANL 387

Query: 406 DIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                      L D    +  ++ LF+ EGDSA GS  + R  + QA+  LRGK LN   
Sbjct: 388 HNKKLRDCRVHLTDLKSDNRYETTLFITEGDSASGSITKSRDIQTQAVFSLRGKPLNSFG 447

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
                +  ++E   L  AL    G     +  LR+++III TDADVDG HIR LL+TFF 
Sbjct: 448 LTKKIVYENEEFNLLQHALDVENG-----VENLRFNRIIIATDADVDGMHIRLLLMTFFL 502

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           +  P L+ NG L++++ PL+ +   K   Y   EE  +  +       EI  F    G I
Sbjct: 503 QFFPDLVRNGHLFVLETPLFRVRNKKETIYCYSEEEKQAAIDKLGNKPEITRF-KGLGEI 561

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
           S  +   FI + ++++ +I     +  K  
Sbjct: 562 SPEEFGKFIGEDMRVEPVILQKETSIQKLL 591


>gi|148616462|gb|ABQ96974.1| GyrB [Nocardiopsis lucentensis]
          Length = 424

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 209/425 (49%), Positives = 285/425 (67%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L + I+++G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTALDVEIRKDGHVWTQHYEMTAPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G   ++TGT++TF P  DIF    F ++TL  R++E++FLN  + I++ D+R  
Sbjct: 62  GDL-VRGEETDETGTQITFWPDGDIFETTVFTFETLARRMQEMAFLNKGLSITIRDERPE 120

Query: 217 E----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y  G+  +V +++  K+P   S I  +   D IS+++AM+WN  Y  +
Sbjct: 121 HTDGGPTVNTFHYDEGLSDYVRHINAKKEPAHASIISFEEDGDGISVEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y       +    ++ GDD REG TS++S+
Sbjct: 181 VHTFANTINTAEGGTHGEGFRSALTTLVNRYARDQKLLRDKDDNLTGDDIREGLTSIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQRVTNEHLRDWFERNPGEAKDIVSKASQAARARIAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR   +QAILP
Sbjct: 301 RQARDLTRRKTLLESTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPHHQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI +D FD +KLRYHKII+MTDADVDG+H
Sbjct: 361 IRGKILNVEKSRIDRILKNNEVQAIITALGTGIHED-FDADKLRYHKIILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|307939326|gb|ADN95854.1| DNA gyrase B [Hymenobacter fastidiosus]
          Length = 432

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 215/431 (49%), Positives = 297/431 (68%), Gaps = 15/431 (3%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF++ SYKVSGGLHGVGVS VNALSS LK+ ++R G++YE  +  G+    +
Sbjct: 3   MTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSSDLKVTVRRNGHMYEQEYKIGVPQYAV 62

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
              G    + GTEV FLP + IF+   + Y+T+ +RLRELS+LN  ++I+L D+R  E  
Sbjct: 63  KEIGDTE-EHGTEVEFLPDASIFTESVYKYETVANRLRELSYLNKGIRITLTDRREKEDD 121

Query: 220 ----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
                   F  GG+  FV YLD  +  LM +PI ++  +    +++A+++ND Y E++  
Sbjct: 122 GSFLYEEFFSHGGLSEFVQYLDSGRTVLMPAPIHVESEKGGTPVEVALQYNDSYQEHIFS 181

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH++G RSALTR + +Y +KS   +K K  V+GDD REG T+V+S+K+ 
Sbjct: 182 YVNNINTIEGGTHVAGFRSALTRTLKAYADKSGLLEKAKVEVLGDDFREGLTAVISVKVQ 241

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +S+V   V + V + L+ +L+E+P EA+IIV+KV+ A+  R AAR+A
Sbjct: 242 EPQFEGQTKTKLGNSDVSGAVNTAVGEILNQYLQENPKEARIIVEKVILAAKARVAARKA 301

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++ +RK VL   SLPGKLADCSE DP   EL+LVEGDSAGG+AKQGR+R  QAILPLRG
Sbjct: 302 REMVQRKSVLGSNSLPGKLADCSESDPAICELYLVEGDSAGGTAKQGRNRAFQAILPLRG 361

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----------NKLRYHKIIIMTD 505
           KILNVE+A+  ++  ++EI  +ITALG    + + +           +KLRYHKIIIMTD
Sbjct: 362 KILNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSTTRSLNVDKLRYHKIIIMTD 421

Query: 506 ADVDGAHIRTL 516
           ADVDG+HIRTL
Sbjct: 422 ADVDGSHIRTL 432


>gi|88824773|gb|ABD52432.1| gyrase B [Yersinia enterocolitica]
          Length = 405

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 240/401 (59%), Positives = 309/401 (77%), Gaps = 4/401 (0%)

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V 
Sbjct: 8   LHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVV 67

Query: 163 GSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           G   + TGT V F PS   F +  +F Y+    RLRELSFLNS V I L DKR+ +    
Sbjct: 68  GET-DQTGTTVRFWPSFQTFTNNTEFQYEIPAKRLRELSFLNSGVSIKLKDKRNDKE--D 124

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI+AFV YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIP
Sbjct: 125 HFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIP 184

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL G R+A+TR ++SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSS
Sbjct: 185 QRDGGTHLVGFRTAMTRTLSSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSS 244

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRR
Sbjct: 245 QTKDKLVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRR 304

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE
Sbjct: 305 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 364

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 365 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 405


>gi|148971437|gb|ABR20256.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 426

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 255/428 (59%), Positives = 317/428 (74%), Gaps = 9/428 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+Q SYKVSGGLHGVG +VVNALS W+ +RI R+   + + F NG   
Sbjct: 1   EVIMTVLHAGGKFDQSSYKVSGGLHGVGAAVVNALSEWMDVRIWRDSTEFFIRFENGNPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G +   TGTEV F PS   F+  +F++   + RLREL+FLNS ++ISL D+R  
Sbjct: 61  APLRVVGPSERPTGTEVVFKPSPVTFTRTEFDFAVFERRLRELAFLNSDLEISLRDERHA 120

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
            P +    Y+GG+  FV++LDR K  L+        +     I I+ A+ WND +HE +L
Sbjct: 121 TPIQSCFCYRGGLVEFVAWLDRSKSALISLPITALREDKGSGIKIEFALSWNDSFHETML 180

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNI Q+DGGTHL+G RSALTR ++ Y +          S++G+D REG T+VLS+K+
Sbjct: 181 CFTNNIIQRDGGTHLAGFRSALTRVVSKYADAIGKKD--NVSLVGEDMREGLTAVLSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+ +V+S V D L  W E HP EAK +V+KV+DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVQPIVQSAVTDVLDHWFETHPKEAKALVQKVIDAAAAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           ARDLTRRKGVLD++SLPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R  QAILPL+
Sbjct: 299 ARDLTRRKGVLDVSSLPGKLADCQERDPSKSEIFIVEGDSAGGSAKQGRDRRTQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVD 509
           GKILNVER+RFD+MLSS EIGTLITALGTG G        FDI K+RYH+++IMTDADVD
Sbjct: 359 GKILNVERSRFDRMLSSAEIGTLITALGTGTGPADPEQGGFDIGKIRYHRVVIMTDADVD 418

Query: 510 GAHIRTLL 517
           G+HIRTLL
Sbjct: 419 GSHIRTLL 426


>gi|110612673|gb|ABG78299.1| GyrB [uncultured bacterium]
          Length = 401

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 240/404 (59%), Positives = 306/404 (75%), Gaps = 3/404 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS +L L I R+G ++   +  G    PL V G +   
Sbjct: 1   FDASSYKVSGGLHGVGVSVVNALSDYLLLTIHRDGRVHRQEYRLGDPVAPLAVVGPSE-Q 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GT + F PS+ IF+   FN+D L  RLRELSFLNS V+I LID+R  E       ++GG
Sbjct: 60  RGTTIRFKPSAQIFTHIQFNHDVLAKRLRELSFLNSGVRIELIDER--ENTSDVFQHEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++AFV YL+R + P+ +S    +     ++I++A++WND Y E++ C+TNNIPQKDGGTH
Sbjct: 118 LQAFVKYLNRSRTPVHESIPWFKTQDGPVTIEVALQWNDSYQESMFCYTNNIPQKDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G RSALTR +  Y+EK   +KKD+    GDD REG T++LS+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRSALTRTLNDYIEKEMSAKKDRVPTTGDDAREGLTAILSVKLPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+ +VE+ V   L  +L EHP +AK I+ K+L+A+  R+AAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKGIVEAAVAAKLQDFLLEHPQDAKAIIAKMLEAARAREAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LSS E+GTLITALG GIG+D FD+ KLRYH++IIMTDADVDG+H
Sbjct: 358 LSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDADVDGSH 401


>gi|269854595|gb|ACZ51344.1| DNA gyrase subunit B [Paenibacillus sp. YC39]
          Length = 406

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 219/410 (53%), Positives = 295/410 (71%), Gaps = 7/410 (1%)

Query: 104 HAGGKFNQKS--YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           HAGGKF      YKVSGGLHGVG+SVVNALS  L +++KREG I++  F  G+    L +
Sbjct: 1   HAGGKFGGDESGYKVSGGLHGVGISVVNALSKKLVVQVKREGKIHQQEFNCGVPQYELKI 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G +  +TGT+VTF P  +IF     +++DTLQ R+REL+FLN  ++I L D+RS     
Sbjct: 61  IGDSE-ETGTQVTFWPDEEIFKETTEYDFDTLQSRIRELAFLNKGIEIVLTDERSDVSTS 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI + V +L+++++PL   PI ++G +DNI++++A+++ND Y EN+  F NNI
Sbjct: 120 --FIYEGGIVSLVEHLNQNREPLHSPPIFVEGEKDNITVEVALQYNDTYAENIYSFANNI 177

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH SG +SALTR +  Y  K    K  + ++ GDD REG T+++S+K+P+P+F 
Sbjct: 178 NTHEGGTHESGFKSALTRILNEYARKFNSIKDSEANLPGDDVREGLTAIISVKIPEPQFE 237

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SEVR +VES  ++ L  +L E+P  AK I++K + A   R+AAR+AR+LTR
Sbjct: 238 GQTKTKLGNSEVRGIVESLFSEKLEEFLVENPSIAKRIIEKGVQAQRAREAARKARELTR 297

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR    QAILPLRGKILNV
Sbjct: 298 RKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDHHFQAILPLRGKILNV 357

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           E+AR DK+LS+ EI  +ITALGTGIG D FDI K RYHK+IIMTDADVDG
Sbjct: 358 EKARLDKILSNVEIRAIITALGTGIG-DDFDITKARYHKVIIMTDADVDG 406


>gi|33145992|emb|CAD57633.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 403

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 241/403 (59%), Positives = 310/403 (76%), Gaps = 3/403 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGTE+ F PS + FS   F+YD L  RLRELSFLNS V I LID+R  E +     
Sbjct: 61  T-DKTGTEIRFWPSEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVDHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDPRFSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPRFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VE  + + LS +L ++P EAK +  K++DA+  RDAAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVEQAMGEKLSEFLIKNPTEAKTVCTKIIDAARARDAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GK+LNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKVLNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT+ 
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTEQ 401


>gi|159146560|gb|ABW90724.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 398

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 242/400 (60%), Positives = 312/400 (78%), Gaps = 3/400 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+ +  ++ +G+ D PL + G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT V F PS+  FS  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y
Sbjct: 61  E-KTGTTVRFWPSAQTFSNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFMY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV++L+R+K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+D
Sbjct: 119 EGGIQAFVTHLNRNKTPIHEKVFHFNSEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R+ALTR + SY++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK
Sbjct: 179 GGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VESF+ D L+ +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 299 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           FDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 398


>gi|159146576|gb|ABW90732.1| DNA gyrase beta subunit [Vibrio vulnificus]
 gi|159146594|gb|ABW90741.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 398

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 241/400 (60%), Positives = 312/400 (78%), Gaps = 3/400 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+ +  ++ +G+ D PL + G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y
Sbjct: 61  E-KTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFMY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV++L+R+K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+D
Sbjct: 119 EGGIQAFVTHLNRNKTPIHEKVFHFNSEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R+ALTR + SY++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK
Sbjct: 179 GGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VESF+ D L+ +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 299 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           FDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 398


>gi|328349753|emb|CBY89184.1| GyrB protein [Flavobacterium sp. R-38392]
          Length = 426

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 198/427 (46%), Positives = 276/427 (64%), Gaps = 10/427 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
            D+HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVS VNALS  L+  + REG 
Sbjct: 1   VDIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSDHLRATVYREGK 60

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
           +YE  +  G    P+   G   +  GT VTF P   IF+    ++YDT+  R+RELSFLN
Sbjct: 61  VYEQEYEKGKAMYPVKQIGET-DKRGTMVTFHPDKSIFTQTIEYSYDTIAGRMRELSFLN 119

Query: 204 SSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
             + I+L D+R      E          G++ FV +LD+ ++ ++   I ++  +  + +
Sbjct: 120 KGITITLTDRRDVNDKGEFASEVFHSTEGLKEFVRFLDKGREAIISHVISMEHEKGEVPV 179

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S    K K  + G
Sbjct: 180 EVALVYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADSSGLLDKLKFEITG 239

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +A+IIV
Sbjct: 240 DDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDARIIV 299

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +KV+ A+  R AA++AR++ +RK VL    LPGKL+DCSE+DP K E++LVEGDSAGG+A
Sbjct: 300 QKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTA 359

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKL 495
           KQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +         KL
Sbjct: 360 KQGRDRMFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALNLEKL 419

Query: 496 RYHKIII 502
           RYHK+II
Sbjct: 420 RYHKVII 426


>gi|148616472|gb|ABQ96979.1| GyrB [Nocardiopsis salina]
          Length = 423

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 213/425 (50%), Positives = 285/425 (67%), Gaps = 7/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALSS L++ I R+G I+   +      
Sbjct: 2   EVIMTVLHAGGKFDDKSYAVSGGLHGVGVSVVNALSSSLEVEIHRDGYIWRQHYELTRP- 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G     TGT++TF P   IF    F+Y+TL  R++E++FLN  + IS+ D+R  
Sbjct: 61  GDL-VRGEEATRTGTQITFWPDEGIFETTTFSYETLSRRMQEMAFLNKGLSISIRDERPE 119

Query: 217 EPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
              +     T  Y+ G+  +V Y++  K+P   S I  +   D IS+++AM+WN  Y  +
Sbjct: 120 FVDDGPVVNTYHYENGLSDYVDYINSKKEPAHASIISFEEEGDGISVEIAMQWNQSYTSS 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+
Sbjct: 180 VHTFANTINTAEGGTHEEGFRTALTALINRYARDQKLLREKDDNLTGDDIREGLTAIISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  WLE +P EAK IV K   A+  R AA
Sbjct: 240 KLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWLERNPGEAKDIVSKASQAARARVAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR   +QAILP
Sbjct: 300 RQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPHHQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI +D FD +KLRYHKII+MTDADVDG+H
Sbjct: 360 IRGKILNVEKSRIDRILKNNEVQAIITALGTGIHED-FDASKLRYHKIILMTDADVDGSH 418

Query: 513 IRTLL 517
           IRTLL
Sbjct: 419 IRTLL 423


>gi|269799110|gb|ACZ43833.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 372

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 207/374 (55%), Positives = 275/374 (73%), Gaps = 4/374 (1%)

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+   + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKV
Sbjct: 1   LAGHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKV 60

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F 
Sbjct: 61  SGGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFW 119

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL
Sbjct: 120 PSHETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYL 178

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           + +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R A
Sbjct: 179 NVNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 238

Query: 296 LTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           LTR + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 239 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 298

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 299 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKL 358

Query: 415 ADCSERDPKKSELF 428
           ADC E+DP  SEL+
Sbjct: 359 ADCQEKDPALSELY 372


>gi|291166441|gb|EFE28487.1| DNA gyrase B subunit [Filifactor alocis ATCC 35896]
          Length = 660

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/596 (28%), Positives = 292/596 (48%), Gaps = 19/596 (3%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +  QN  Y  +SI  LKG D V+ RP++  G  DG  G  H ++E+L NAIDE+ EG   
Sbjct: 4   EKKQNVDYGNNSISSLKGPDRVRLRPAVIFGS-DGIEGCQHAMFEILSNAIDEAREGNGT 62

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN---QKSYKVSGG 119
            I V  + D S T+ D GRG P D +++E     E+I   L+AGGK+N    K+Y+ S G
Sbjct: 63  KINVIRHSDFSVTIEDFGRGAPLDFNEKENRYNYELIFEELYAGGKYNTNQGKNYEYSLG 122

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+G+G       S ++ +++KR+G +Y++ F  G     L     +   T T++ F P +
Sbjct: 123 LNGLGCCATQYSSEYMDVKVKRDGYLYQVHFEKGYSIGGLKKEKDSSPGTYTKIKFKPDT 182

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           ++F+  +   +     L+  + +N  V   L D+ S                     D +
Sbjct: 183 EVFTDINITLEFYCDTLKRQAVINKGVSFHLFDEISNSEFSYCYENGIVDYVNELIGDNY 242

Query: 240 KKPLMQSPIRIQG----SRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHLSGLRS 294
                   +  +G     +    +   + +      N +  + N+   + GG+     +S
Sbjct: 243 ISSPHSVSLETKGRDREDKPFYKLKADICFAFSNEANRLEFYHNSSYLEHGGSPEKATKS 302

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A    + SY++K     K+++ +   D  +    V++       + +QTK+ + +  ++ 
Sbjct: 303 AFVSAVDSYIKKLGKYYKNEKKISFSDIEDSLLLVINSFSTMTSYENQTKKAITNKFIQQ 362

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR--KGVLDIASLPG 412
            +  F+ + L  +  E+  E + I+ ++L     R++A + R   +R  K   D  +   
Sbjct: 363 ALTDFLKEQLEIYFTENQQEGEKIIDQILVNKHSRESAEKTRMAIKRNLKTTFDPLTRIK 422

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           K  DC  ++P + EL++VEGDSA GS KQGR+ + QAI+P+RGKILN  ++   ++ ++ 
Sbjct: 423 KFVDCRTKNPDERELYIVEGDSALGSCKQGRNSDFQAIIPIRGKILNCLKSDSARIFAND 482

Query: 473 EIGTLITALGTGIGQD--------SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            I  +I+ LGTG+  +         F+++ LR++KIII TDADVDG  IRTLLLT F+  
Sbjct: 483 IITDIISILGTGVEMNSKHLKDIADFNMDNLRWNKIIICTDADVDGFQIRTLLLTMFYML 542

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            P+LI  G++YI + PLY I+      +   E+  E  L     S  ++       
Sbjct: 543 TPTLIEKGYIYIAESPLYEISSKNKTYFAYSEKEKEAILSKIKGSYHVQRSKGLGE 598



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 108/312 (34%), Gaps = 38/312 (12%)

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
             +T +  Q    I N F+               + + ++++  E  +    +++     
Sbjct: 342 STMTSYENQTKKAITNKFIQQALTDFLK--EQLEIYFTENQQEGEKIIDQILVNKHSRES 399

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN--CESDQEINVS 633
            +   +  K +L+   D   +I K +     N D+  +             +       +
Sbjct: 400 AEKTRMAIKRNLKTTFDPLTRIKKFVDCRTKNPDERELYIVEGDSALGSCKQGRNSDFQA 459

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
           +       LN +   S + +   I    I +      +  + + + +       ++ +I 
Sbjct: 460 IIPIRGKILNCLKSDSARIFANDIITDIISILGTGVEMNSKHLKDIADFNMDNLRWNKII 519

Query: 694 -------------SNRIEENYLTILSLICNGDKIKITGPCSLL---------------DT 725
                        +  +   Y+   +LI  G       P   +               + 
Sbjct: 520 ICTDADVDGFQIRTLLLTMFYMLTPTLIEKGYIYIAESPLYEISSKNKTYFAYSEKEKEA 579

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK---ITDASQADDLFSRLMG 782
           I S  +    +QR KGLGE     +WETT+NP+TR L++V      D   A   F  L+G
Sbjct: 580 ILSKIKGSYHVQRSKGLGENEPDMMWETTMNPETRRLIQVTEYNPEDTKIA---FDTLLG 636

Query: 783 DEVEPRREFIQE 794
           D+++ R+E+I+ 
Sbjct: 637 DDLQSRKEYIEN 648


>gi|110612643|gb|ABG78284.1| GyrB [uncultured bacterium]
          Length = 395

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 238/398 (59%), Positives = 306/398 (76%), Gaps = 3/398 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVG SVVNALS  L + ++R G ++E  + +G+ D P+  TG A   
Sbjct: 1   FDDNSYKVSGGLHGVGASVVNALSEELHMTVRRNGRVHEQHYRHGVPDAPMAETGDAT-T 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT++ F PS++ FS  +F+YD L  RLRELS+LNS V I L D+RS   R+ T  Y+GG
Sbjct: 60  TGTQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLYDERS--QRQDTFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I AFV +L+++K  ++ +   +   +DNI ++L+M+WND Y E + CFTNNIPQ+DGGTH
Sbjct: 118 ITAFVEHLNKNKNVIIPTVFSMITEKDNIVVELSMQWNDSYQETLYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTR + +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLV
Sbjct: 178 MAGFRAALTRTLNNYIESEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++VVES V +  + +L E+P  AK IV K+ DA+  R+AARRAR++TRRKG LDIA
Sbjct: 238 SSEVKAVVESGVAEKFNDFLLENPSCAKAIVGKITDAARAREAARRAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           LSSQE+ TLITALG GIG D +D +K+RYH+IIIMTDA
Sbjct: 358 LSSQEVATLITALGCGIGPDEYDPDKVRYHRIIIMTDA 395


>gi|307939308|gb|ADN95845.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 440

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 215/441 (48%), Positives = 299/441 (67%), Gaps = 21/441 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E+IMT LHAGGKF++ SYKVSGGLHGVGVS VNALS+ LK+ ++R G+ YE  +  GI  
Sbjct: 1   ELIMTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS- 215
             +   G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R  
Sbjct: 61  YDVKEVGLSE-EHGTEVQFLPDATIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREK 119

Query: 216 ---PEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHE 271
                 R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y E
Sbjct: 120 LEGGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NV  + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S
Sbjct: 180 NVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R A
Sbjct: 240 VKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAIL
Sbjct: 300 ARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLR 496
           PLRGKILNVE+A+  ++L ++EI  +ITALG                G      + +KLR
Sbjct: 360 PLRGKILNVEKAQEHRILENEEIKNMITALGVSFNERKSLAFTTDDDGTESGPLNFSKLR 419

Query: 497 YHKIIIMTDADVDGAHIRTLL 517
           YHK+IIMTDADVDG+HIRTLL
Sbjct: 420 YHKVIIMTDADVDGSHIRTLL 440


>gi|223983625|ref|ZP_03633803.1| hypothetical protein HOLDEFILI_01084 [Holdemania filiformis DSM
           12042]
 gi|223964392|gb|EEF68726.1| hypothetical protein HOLDEFILI_01084 [Holdemania filiformis DSM
           12042]
          Length = 328

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/314 (42%), Positives = 206/314 (65%), Gaps = 6/314 (1%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +     SY +  IQ+L+GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA 
Sbjct: 2   EKPVEHSYTSHDIQVLEGLEAVRKRPGMYIGSTS-EKGLHHLVWEIVDNSIDEALAGYAT 60

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I ++++     TV DNGRG+P ++H++ GIS  E I T LHAGGKF   +YKVSGGLHG
Sbjct: 61  EIEISVDPQNIVTVEDNGRGMPVEIHEKTGISTVETIFTVLHAGGKFGGGAYKVSGGLHG 120

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLPSSD 180
           VG SVVNALS WL++ + +EG ++ + F N G    PL   G+   +  G+ V FL  + 
Sbjct: 121 VGASVVNALSEWLEVTVYKEGKVFFIRFENGGKAVAPLKQIGTCDPSKHGSLVRFLADAT 180

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE--PREITMFYKGGIEAFVSYLD 237
           IF+    +N+D L  RLR+++FLN  +++   D+R  +   R  T  Y+GG++ ++++L+
Sbjct: 181 IFTETVAYNHDVLYDRLRQIAFLNKGIKLLFTDERMEDEAKRSHTFLYEGGLKEYIAFLN 240

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           ++K P+ +  I ++G +D I +++AM++NDGY  NV  F NNI   +GGTH  G + AL 
Sbjct: 241 KNKTPIHEEIIYVEGEQDGIQVEIAMQYNDGYVPNVYSFCNNINTGEGGTHEEGFKLALN 300

Query: 298 RQITSYVEKSFGSK 311
           R + SY +++   K
Sbjct: 301 RTLNSYAKEAGLLK 314


>gi|148616442|gb|ABQ96964.1| GyrB [Nocardiopsis baichengensis]
          Length = 424

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 206/425 (48%), Positives = 284/425 (66%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALSS L+  ++R+G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSSRLEAEVRRDGHVWRQHYEVTRPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             +   G    +TGT++TF     IF    ++++TL  R++E++FLN  + I+L D+R  
Sbjct: 62  ADVAK-GEETAETGTQITFWADPTIFETTTYSFETLARRMQEMAFLNKGLSITLRDERPE 120

Query: 217 E----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y+ G+  FV +++  K+P   S I  +   + IS+++AM+WN  Y  +
Sbjct: 121 FLADGPVVQTFHYEDGLVDFVRHINAKKEPSHASIIDFEEDGEGISVEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       ++   ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRTALTSVVNRYARDQKLLREKDDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   ++ +  W E +P EAK IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQRVTHEHVRDWFERNPGEAKDIVSKASQAARARIAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P+KSE+++VEGDSAGGSAK GR    QAILP
Sbjct: 301 RQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPLYQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKII+MTDADVDG+H
Sbjct: 361 IRGKILNVEKARIDRILKNNEVQAIITALGTGI-HDDFDIDKLRYHKIILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|27544672|dbj|BAC55031.1| DNA gyrase B subunit [Legionella spiritensis]
          Length = 300

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/302 (56%), Positives = 225/302 (74%), Gaps = 3/302 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  +GLHHM++EV+DNAIDE+L G+   I V +++D S TV D+GRGIP D+H+EEG 
Sbjct: 1   DTDDGTGLHHMVFEVVDNAIDEALAGHCKEINVIIHVDESITVKDDGRGIPVDIHEEEGR 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R   ++E  + NG
Sbjct: 61  SAAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTIRRNNKVHEQHYRNG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           + D PL VTG A   TGT+V F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+
Sbjct: 121 VPDAPLAVTGDA-VATGTQVWFKPSANTFSNIEFHYDILARRLRELSFLNSGVCIHLLDE 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +  + T  Y+GGI+AFV +L+R+K P+M     +   +DNIS++L+M+WND + E +
Sbjct: 180 RTQK--QDTFRYEGGIKAFVEHLNRNKTPIMPVVFSLNAEKDNISVELSMQWNDSFQETI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL+G R+ALTR + +Y+E    +KK K +  GDD REG T+VLS+K
Sbjct: 238 FCFTNNIPQRDGGTHLAGFRAALTRTLNTYIENEGFAKKAKITTTGDDAREGLTAVLSVK 297

Query: 334 MP 335
           +P
Sbjct: 298 VP 299


>gi|33187325|gb|AAP97525.1| DNA gyrase subunit B [Campylobacter coli]
          Length = 400

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 209/406 (51%), Positives = 281/406 (69%), Gaps = 6/406 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V G 
Sbjct: 1   AGGKFDKDTYKVSGGLHGVGVSVVNALSKKLIATVERNGEIYRQEFSEGKVISEFGVIGK 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +   TGT + F P   IF V +F+YD L  R REL++LN  + I+  D R  +    +  
Sbjct: 61  SK-KTGTTIEFWPDDTIFEVTEFDYDILAKRFRELAYLNPKITINFKDNRVGKS--ESFH 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           ++GGI  FVS  D +KK  +  PI      +++++++A+ +ND Y EN+L F NNI   D
Sbjct: 118 FEGGISQFVS--DLNKKEALTKPIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPD 175

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH +G R  LTR I++Y+E +  +++    + GDD REG  +V+S+K+P+P+F  QTK
Sbjct: 176 GGTHEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTK 235

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL SS VR +V     + LS + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  
Sbjct: 236 GKLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKES 295

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR
Sbjct: 296 LSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKAR 355

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG
Sbjct: 356 LDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDG 400


>gi|301477624|dbj|BAJ12097.1| DNA gyrase subunit beta [Pandoraea sp. NS15]
          Length = 418

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 241/421 (57%), Positives = 314/421 (74%), Gaps = 15/421 (3%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGSA 165
           GGLHGVGVS VNALSS+LKL ++R+G  + M F  G+              +PL V G  
Sbjct: 1   GGLHGVGVSCVNALSSYLKLTVRRDGKKHFMEFHRGVPQNREIEVVDGVETSPLKVVGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            +  GTEV FL    IF   +F+YD L  R+RELSFLN+ V+I L D R+ +       +
Sbjct: 61  -DKRGTEVHFLADETIFGKVEFHYDILAKRMRELSFLNNGVRIRLTDLRTGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV ++++ K  L  +   + G RD I +++AM+WND Y+E+VLCFTNNIPQ+DG
Sbjct: 118 GGGVKGFVEFINKSKTVLHPTVFHVMGERDGIGVEVAMQWNDSYNESVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+ +S  +KK K    GDD REG T VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYISESEIAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR+ VE +V   L  +L+E P++AKII  K+++A+  RDAAR+AR++TRRKGVL
Sbjct: 238 KLVSSEVRAPVEEYVAKALEDFLQETPIDAKIICSKIVEAARARDAARKAREMTRRKGVL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARF
Sbjct: 298 DGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARF 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           DK++SS++I TLITALG GIG+D ++I+KLRYH+IIIMTDADVDGAHIRTLLLTF +RQ+
Sbjct: 358 DKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQV 417

Query: 526 P 526
           P
Sbjct: 418 P 418


>gi|4589346|gb|AAD26460.1|AF136388_1 gyrase B subunit [Bacillus cereus]
          Length = 407

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 206/409 (50%), Positives = 292/409 (71%), Gaps = 4/409 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+   YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + 
Sbjct: 2   FDGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQ 60

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+G
Sbjct: 61  TGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEG 119

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGT
Sbjct: 120 GIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGT 179

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL
Sbjct: 180 HEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L++
Sbjct: 240 GNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEV 299

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           +SLPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK
Sbjct: 300 SSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDK 359

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           +LS+ E+ T+ITA+GT IG D FDI K RYHK+IIMTDADVDG+HIRTL
Sbjct: 360 ILSNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGSHIRTL 407


>gi|160558667|gb|ABX45022.1| DNA gyrase subunit B [Streptomyces sp. IMBJ01]
          Length = 510

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 218/502 (43%), Positives = 301/502 (59%), Gaps = 24/502 (4%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+   Y VSGGLHGVGVSVVNALS+ + + +K +G+ +   +  G+   PL     
Sbjct: 1   AGGKFDGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQ-HE 59

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------- 215
           A  +TGT VTF    DIF   +++++TL  R +E++FLN  + + L D+R          
Sbjct: 60  ATEETGTTVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGAD 119

Query: 216 ----------PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLA 262
                        R +T  Y+ GI  FV Y   R    + QS I I+    +  +S ++A
Sbjct: 120 SADAVEPAEEETARTVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSAEIA 179

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN  Y E V  F N I   +GGTH  G R+ALT  +  Y       ++   ++ G+D 
Sbjct: 180 MQWNTQYSEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDV 239

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+++S+K+ +P+F  QTK KL ++E ++ V+  V++ L+ W + +P EA  I++K 
Sbjct: 240 REGHTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKG 299

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + AS  R AAR+ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK G
Sbjct: 300 IAASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSG 359

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+   QAILP+RGKILNVE+AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 RNPMYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIIL 418

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           M DADVDG HI TLLLTF FR M  L+  G +Y+ +PPLY I  G+        +   D 
Sbjct: 419 MADADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDA 478

Query: 563 LINQSLSEEIELFCDSKGVISK 584
           L+         +  DS      
Sbjct: 479 LVALGKQNGKRIKEDSIQRFKG 500



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 6/34 (17%)

Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLW 751
           D + ++G+      K  S+QR+KG GEMNA+QLW
Sbjct: 477 DALVALGKQNGKRIKEDSIQRFKGFGEMNATQLW 510


>gi|159895002|gb|ABX09847.1| DNA gyrase beta subunit [Vibrio harveyi]
          Length = 400

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 236/402 (58%), Positives = 313/402 (77%), Gaps = 3/402 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDYSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               TGT++ F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  TE-QTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCTKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           RFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTD
Sbjct: 359 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|4588023|gb|AAD25956.1|AF090331_1 gyrase B subunit [Bacillus thuringiensis]
          Length = 404

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 203/407 (49%), Positives = 289/407 (71%), Gaps = 4/407 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+   YKVSGGLHGVG SVVNALS+ L++ + R+G I+   +  GI    L V G
Sbjct: 1   HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYQRGIPVADLKVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              + TGT   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++  
Sbjct: 61  DT-DKTGTITRFKPDPEIFKETTEYEFDTLATRVRELAFLNRNIKLTIEDKREHKQKKE- 118

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI+++V +L+R K+P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI  
Sbjct: 119 FHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  Q
Sbjct: 179 YEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SE R++ ES  ++    +L E+P  A+ +V K   A+  R AA++AR+LTRRK
Sbjct: 239 TKTKLGNSEARTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+
Sbjct: 299 SALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           AR DK+LS+ E+ T+ITA+GT IG D FDI K RYHK+IIMTDADVD
Sbjct: 359 ARLDKILSNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMTDADVD 404


>gi|110264825|gb|ABG56988.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 400

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 239/402 (59%), Positives = 312/402 (77%), Gaps = 4/402 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            + TGT + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++    
Sbjct: 61  -DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+
Sbjct: 119 YEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           RFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTD
Sbjct: 359 RFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|295979453|dbj|BAJ07399.1| DNA gyrase subunit B [Paracoccus sp. Y4]
          Length = 315

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/315 (56%), Positives = 219/315 (69%), Gaps = 7/315 (2%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+ EV+DN IDE+L G+AD + V ++ D S +V DNGRGIP D+H  EG+
Sbjct: 1   DTDDGSGLHHMVTEVVDNGIDEALAGHADYVQVKIHADNSVSVRDNGRGIPVDMHPTEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVVNALS WL+LR+ R G  +   F  G
Sbjct: 61  SAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLELRVWRNGKEHYARFEKG 120

Query: 154 ILDNPLVVTGS-AGNDTGTEVTFLPSSD------IFSVQDFNYDTLQHRLRELSFLNSSV 206
                L V G  A  +TGTEV FL S+        FS  ++ Y TL+ RLREL+FLNS V
Sbjct: 121 DTVEHLRVVGEAAPGETGTEVRFLASAKTNDPNGTFSNLEYVYKTLETRLRELAFLNSGV 180

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+R  E +   +FY+GG+  FV YLDR K  +M  PI + G R  I +++AM WN
Sbjct: 181 RIILEDERHAEVQRTELFYEGGVREFVKYLDRSKTAVMPEPIFMSGERGGIGVEVAMWWN 240

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D YHE VL FTNNIPQ+DGGTHL+G R ALTR I  Y + S  +KK+K    GDD REG 
Sbjct: 241 DSYHETVLPFTNNIPQRDGGTHLAGFRGALTRVIGKYAQDSGIAKKEKVEFTGDDAREGL 300

Query: 327 TSVLSIKMPDPRFSS 341
           T VLS+K+PDP+FSS
Sbjct: 301 TCVLSVKVPDPKFSS 315


>gi|148616468|gb|ABQ96977.1| GyrB [Nocardiopsis rhodophaea]
          Length = 424

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/425 (48%), Positives = 282/425 (66%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ K+Y VSGGLHGVGVSVVNALSS L++ I+ +G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDDKAYAVSGGLHGVGVSVVNALSSRLEVEIRCDGHVWRQRYELTRPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L     A  +TGT++TF     IF    +N++TL  R++E +FLN  + I+L D+R  
Sbjct: 62  ADLSK-DEATEETGTQITFWADDSIFETTTYNFETLARRMQETAFLNKGLSITLRDERPE 120

Query: 217 E----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y+ G+  FV +++  K P   S I  +   + IS+++AM+WN  Y  +
Sbjct: 121 FTGDAPVVHTYHYEDGLADFVRHINAAKDPAHASIISFEEEGEGISVEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       ++ + ++ GDD REG T+V+S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRAALTSIVNRYARDQRLLREKEDNLTGDDIREGLTAVISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQRVTNEHLRDWFERNPGEAKDIVTKTNQAARARVAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P+KSE+++VEGDSAGGSAK GR    QAILP
Sbjct: 301 RQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPHYQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITA+GTGI  D FDI KLRYHKII+MTDADVDG+H
Sbjct: 361 IRGKILNVEKSRIDRILKNNEVQAIITAMGTGI-HDEFDIEKLRYHKIILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|33187315|gb|AAP97520.1| DNA gyrase subunit B [Campylobacter coli]
 gi|33187317|gb|AAP97521.1| DNA gyrase subunit B [Campylobacter coli]
          Length = 400

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 209/406 (51%), Positives = 281/406 (69%), Gaps = 6/406 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V G 
Sbjct: 1   AGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGK 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +   TGT + F P   IF V +F+YD L  R REL++LN  + I+  D R  +    +  
Sbjct: 61  SK-KTGTTIEFWPDDTIFEVTEFDYDILAKRFRELAYLNPKITINFKDNRVGKS--ESFH 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           ++GGI  FVS  D +KK  +  PI      +++++++A+ +ND Y EN+L F NNI   D
Sbjct: 118 FEGGISQFVS--DLNKKEALTKPIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPD 175

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH +G R  LTR I++Y+E +  +++    + GDD REG  +V+S+K+P+P+F  QTK
Sbjct: 176 GGTHEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTK 235

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL SS VR +V     + LS + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  
Sbjct: 236 GKLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKES 295

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR
Sbjct: 296 LSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKAR 355

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG
Sbjct: 356 LDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDG 400


>gi|148470286|gb|ABQ66090.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 199/423 (47%), Positives = 276/423 (65%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L+L I +EG ++   +  G+  
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSQTLELEIHQEGKLHRQVYHQGVPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G+     GT + F P   I     F +DTL HR REL+FLN  + I  + +   
Sbjct: 61  APLAVVGTTT-LRGTSIRFWPDLSIMETDTFLFDTLAHRFRELAFLNPILTI--VLREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE-NVLC 275
             RE T  ++GGI+++  +L+ +KK + +     +        ++A ++ +      +L 
Sbjct: 118 SLREETFHFEGGIKSYNEFLNENKKTIHEVLFFRRELPTGAQFEVAFQYQETTDNETILG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  K+GGTH+ G R+ALTR I  +++    +K ++    G+D REG T+V+S+++P
Sbjct: 178 FANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELR--GEDIREGLTAVVSVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL SS V   +E+F+ + +    EE P  AK I  K +  +M R+AAR+A
Sbjct: 236 DPQFEGQTKAKLGSSWVAGAMETFLAEEMQERFEEFPQIAKKIADKGIQTAMAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++L +RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R+ QAI PL+G
Sbjct: 296 KELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAISPLKG 355

Query: 456 KILNVERA-RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+A   ++ ++  E+  LITA+G G+G + +    LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|269799102|gb|ACZ43829.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 372

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 206/374 (55%), Positives = 275/374 (73%), Gaps = 4/374 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+   + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVS
Sbjct: 1   AGHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F P
Sbjct: 61  GGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWP 119

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+
Sbjct: 120 SHETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLN 178

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R AL
Sbjct: 179 VNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGAL 238

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 239 TRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 298

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 299 VEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLA 358

Query: 416 DCSERDPKKSELFL 429
           DC E+DP  SEL++
Sbjct: 359 DCQEKDPALSELYI 372


>gi|198250527|gb|ACH85245.1| DNA gyrase subunit B [Paenibacillus validus]
          Length = 403

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 223/406 (54%), Positives = 294/406 (72%), Gaps = 5/406 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF  + YKVSGGLHGVGVSVVNALS  L +++KREG IYE  +  G+    L V G  
Sbjct: 2   GGKFGGEGYKVSGGLHGVGVSVVNALSKKLVVQVKREGIIYEQEYHRGVPQQDLQVIGET 61

Query: 166 GNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             ++GT+VTF P  +IF+    F++DTLQ R+REL+FLN  ++I L D+R+      T  
Sbjct: 62  S-ESGTQVTFWPDEEIFTETREFDFDTLQSRIRELAFLNRGIEIILRDERTD--VSHTFK 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GGI +FV YL+R ++ L Q PI ++G +DNI +++A+++ND Y EN+  F NNI   +
Sbjct: 119 YEGGIISFVEYLNRTREALHQPPIFVEGDKDNIHVEVALQYNDSYSENIYSFANNINTHE 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH SG +SALTR +  Y  K+   K+   ++ GDD REG T+++S+K+P+P+F  QTK
Sbjct: 179 GGTHESGFKSALTRILNDYARKNNAIKESDANLSGDDVREGLTAIISVKIPEPQFEGQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEVR +VES   +    +++E+P  AK IV+K L A   R+AAR+AR+LTR K  
Sbjct: 239 TKLGNSEVRGIVESLFAEKFQEFMDENPAIAKKIVEKGLQAQRAREAARKARELTRWKSA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+++SLPGKLADCS +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNVE++R
Sbjct: 299 LEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKSR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            DK+LS+ EI  +ITALGTGIG D FDI K RYHKIIIMTDADVDG
Sbjct: 359 LDKILSNAEIRAIITALGTGIG-DDFDIAKARYHKIIIMTDADVDG 403


>gi|148470302|gb|ABQ66098.1| gyrase b [uncultured bacterium]
          Length = 417

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 202/416 (48%), Positives = 278/416 (66%), Gaps = 7/416 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHKNGLIHRQTYHKGAPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F++DTL HR REL+FLN  + I L ++ + 
Sbjct: 61  APLTVFGETA-QRGTIIRFWPDMTIMETDQFSFDTLSHRFRELAFLNPVLTIHLKEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG   ++S+++P
Sbjct: 178 FANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLMGIISVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK +L SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A
Sbjct: 236 GPQFEGQTKAELGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           KILNVE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADVDG
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDG 411


>gi|148616440|gb|ABQ96963.1| GyrB [Nocardiopsis alba]
          Length = 424

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 207/425 (48%), Positives = 288/425 (67%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVG+SVVNALS+ L + I+++G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGISVVNALSTALDVEIRQQGHVWRQHYEMTAPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G A ++TGT++TF    DIF    F+++TL  R++E++FLN  + I++ D+R  
Sbjct: 62  GEL-VKGEATDETGTQITFWADGDIFETTTFSFETLARRMQEMAFLNKGLSITIRDERPE 120

Query: 217 EPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
              +     T  Y+ G+  +V +++  K+P   S I  +   + I++++AM+WN  Y  +
Sbjct: 121 HTDDGPVVNTFHYEEGLSDYVRHINNKKEPAHASIISFEEEGEGIAVEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y       +    ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQRLLRDKDDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK IV +   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSRASQAARARVAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   DP++ E+++VEGDSAGGSAK GR+  NQAILP
Sbjct: 301 RQARDLTRRKTLLETTSLPGKLSDCQSTDPEECEVYIVEGDSAGGSAKGGRNPHNQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE+AR D++L +QE+  +ITALGTGI +D FD  KLRYHKII+MTDADVDG+H
Sbjct: 361 IRGKILNVEKARIDRILKNQEVQAIITALGTGIHED-FDAEKLRYHKIILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|18916405|dbj|BAB85499.1| DNA gyrase subunit B [Rhizobium leguminosarum]
          Length = 305

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 200/305 (65%), Positives = 256/305 (83%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+ADI+TVTLN DGS TV+DNGRGIPTD+H  EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADIVTVTLNPDGSVTVTDNGRGIPTDIHTGEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WLKL+I+R   I+EMSF +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVWLKLKIRRHDKIHEMSFTHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           + D PL VTG A N+TGTEV+F+PS+D F++ +F+Y TL+HRLREL+FLNS V+I L DK
Sbjct: 121 VADAPLKVTGEAPNETGTEVSFMPSTDTFTMTEFDYGTLEHRLRELAFLNSGVRILLTDK 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + ++  + Y GG+EAFV+YLDR KK L+  P+ I+G +D I++++AM WND YHENV
Sbjct: 181 RHSDIKQEELRYDGGLEAFVAYLDRAKKSLVDKPVAIRGEKDGITVEVAMWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTH++G R+ALTRQ+ SY + S  +K++K ++ G+DCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHMAGFRAALTRQVVSYADSSGITKREKVTLQGEDCREGLTAVLSVK 300

Query: 334 MPDPR 338
           +PDP+
Sbjct: 301 VPDPK 305


>gi|150390857|ref|YP_001320906.1| DNA gyrase subunit B [Alkaliphilus metalliredigens QYMF]
 gi|149950719|gb|ABR49247.1| DNA gyrase, subunit B domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 680

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 163/585 (27%), Positives = 289/585 (49%), Gaps = 24/585 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D  +   Y  +SI  L  ++ V+ RP +  G  DG +G  H + E + N++DE+ EG+
Sbjct: 1   MTDK-KKQEYGNESISSLTEIEKVRLRPQVIFGS-DGITGSRHTVDETVANSVDEAKEGF 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK---SYKVS 117
             +I V    D S +V D  RGIP + + +E     E++   L+AGGK+N     SY+ S
Sbjct: 59  GKLIKVKRFKDRSISVQDFARGIPVEFNSKENKYNWELVFCTLYAGGKYNTNSGESYEYS 118

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+G+G +     S ++ + ++R+G  Y + F  G     L         TGT +T+ P
Sbjct: 119 KGLNGLGTTATQFASEYMDVLVRRDGYEYTLRFEKGENIGGLQKKKCDYESTGTTITWKP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             D+F+  +   +  Q  L+  + +N  +   L D+ S E        + GI  ++  ++
Sbjct: 179 DLDVFTDINIPLEFYQELLKRQAIVNKGITFELYDEASEENFTYYY--EKGIVDYIEEIN 236

Query: 238 RHKK------PLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLS 290
             K+        +++  R +  +    +   + +  + +  ++  + N+   + GG    
Sbjct: 237 GGKELSSVQYIELETKGRDRADKPEYKVKAEVAFAFNNHASHIEYYHNSSYLEYGGAPDK 296

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            ++SA    I  Y++ +   KKD++  I  D  +    + +       F +QTK  + + 
Sbjct: 297 AVKSAFLSAIEQYLKNNNLYKKDEKRAIFADIEDSLVLISNSYSTLTSFENQTKRAISNV 356

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--GVLDIA 408
            ++S +  F+ + L  +  E+ +EA  I  +++     R++A + R   ++K     + A
Sbjct: 357 FIQSALTDFLKEKLQIYFIENKVEADKIANQIIINKRSRESAEKTRINVKKKLESPSNFA 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +   K  DC  +D  K EL++VEGDSA GS KQGR  E QAI+P+RGKILN  +A+ D +
Sbjct: 417 NKVAKFVDCKTKDKSKRELYIVEGDSAMGSTKQGRDSEFQAIMPVRGKILNCLKAKLDNI 476

Query: 469 LSSQEIGTLITALGTGIGQD--------SFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
            +   I  L+  L  GI           +F+++KL + K+II TDADVDG  IRTL+L  
Sbjct: 477 FNDSVIVDLLKVLSCGIEIKSKNNTDLYTFELDKLNWDKVIICTDADVDGYQIRTLILAM 536

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
            +R +P+L+  G +YI + PL+ I      +    ++    ++ N
Sbjct: 537 LYRLVPTLLREGKVYIAETPLFEIISTTLPKLTDKQKDGITFVEN 581



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 113/332 (34%), Gaps = 54/332 (16%)

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
             LT F  Q    I N F+               + +++++   +       +++     
Sbjct: 340 STLTSFENQTKRAISNVFIQSALTDFLK--EKLQIYFIENKVEADKIANQIIINKRSRES 397

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF--NCESDQEINVS 633
            +   +  K  L +  + A K+ K +     +  K  +             +       +
Sbjct: 398 AEKTRINVKKKLESPSNFANKVAKFVDCKTKDKSKRELYIVEGDSAMGSTKQGRDSEFQA 457

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILV-----KRIARGVQEQFVLEGSSIF----- 683
           +       LN +  K +  ++ S+    + V     +  ++   + +  E   +      
Sbjct: 458 IMPVRGKILNCLKAKLDNIFNDSVIVDLLKVLSCGIEIKSKNNTDLYTFELDKLNWDKVI 517

Query: 684 ---SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP----------------CSLLD 724
                     +I +  +   Y  + +L+  G       P                   + 
Sbjct: 518 ICTDADVDGYQIRTLILAMLYRLVPTLLREGKVYIAETPLFEIISTTLPKLTDKQKDGIT 577

Query: 725 TIFSIGRKGISM---------------------QRYKGLGEMNASQLWETTLNPDTRSLL 763
            + + G K  S+                     QR KGLGE     +W+TT+NP TR L+
Sbjct: 578 FVENKGDKNYSIFVYSDQQRDFVVSKLKGKYAIQRSKGLGENEPEMMWQTTMNPQTRKLI 637

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +V ++DA +ADD+F  L+G+ +E R+  I EN
Sbjct: 638 QVTMSDAQKADDVFDLLLGNNLEGRKVHIAEN 669


>gi|295979455|dbj|BAJ07400.1| DNA gyrase subunit B [Paracoccus sp. F1547]
          Length = 313

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/313 (57%), Positives = 224/313 (71%), Gaps = 6/313 (1%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DN IDE+L G+AD + V ++ D S +V DNGRGIP D+H  EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNGIDEALAGHADFVRVKIHADNSVSVRDNGRGIPVDMHPTEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+LRI R G  +   F  G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGQEHYARFEKG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSD------IFSVQDFNYDTLQHRLRELSFLNSSVQ 207
                L V G A  ++GTEV F+ SS        FS  D+ + TL++RLREL+FLNS V+
Sbjct: 121 ETAEHLRVVGDAPGESGTEVRFMASSKTTDPEGTFSNLDYVFKTLENRLRELAFLNSGVR 180

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           I + D+R  EP    +FY GG+  FV YLDR K   M++PI + G R+ I +++AM WND
Sbjct: 181 IIIEDERPAEPLRTELFYDGGVREFVKYLDRSKTSTMETPIFMTGERNGIGVEVAMWWND 240

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            YHE VL FTNNIPQ+DGGTH++G R ALTR IT Y ++S  ++K+K    GDD REG T
Sbjct: 241 SYHETVLPFTNNIPQRDGGTHMAGFRGALTRVITKYAQESGIARKEKVDFTGDDAREGLT 300

Query: 328 SVLSIKMPDPRFS 340
            VLS+K+PDP+FS
Sbjct: 301 CVLSVKVPDPKFS 313


>gi|33187323|gb|AAP97524.1| DNA gyrase subunit B [Campylobacter coli]
          Length = 400

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/406 (51%), Positives = 281/406 (69%), Gaps = 6/406 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   + G 
Sbjct: 1   AGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFDIIGK 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +   TGT + F P   IF V +F+YD L  R REL++LN  + I+  D R  +    +  
Sbjct: 61  SK-KTGTTIEFWPDDTIFEVTEFDYDILAKRFRELAYLNPKITINFKDNRVGKS--ESFH 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           ++GGI  FVS  D +KK  +  PI      +++++++A+ +ND Y EN+L F NNI   D
Sbjct: 118 FEGGISQFVS--DLNKKEALTKPIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPD 175

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH +G R  LTR I++Y+E +  +++    + GDD REG  +V+S+K+P+P+F  QTK
Sbjct: 176 GGTHEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTK 235

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL SS VR +V     + LS + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  
Sbjct: 236 GKLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKES 295

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR
Sbjct: 296 LSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKAR 355

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG
Sbjct: 356 LDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDG 400


>gi|2232283|gb|AAC34929.1| gyrase beta subunit [Shewanella amazonensis SB2B]
          Length = 419

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 243/422 (57%), Positives = 317/422 (75%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L    KF   SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G+ D
Sbjct: 1   EVIMTVLRPLKKFEDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+ V G A   TGTEV F PS + FS   F++D L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKVVGDAT-KTGTEVRFWPSEETFSDTLFHFDILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 120 KD--EFFKYEGGISAFVEYLNRNKTPVNKDIFHFAQEREDGITVEVAMQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIP +DGGTHL+G R ALT  + +Y+E    +KK+K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPHRDGGTHLAGFRGALTGNLNNYMEAEGYNKKNKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  + + L  +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLLENPGDAKLIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGG AKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGFAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML SQE+ TLITALG GIG+D +D +K RY  I ++TDA VDG+HI T
Sbjct: 358 KILNVEKARFDKMLFSQEVATLITALGCGIGRDEYDPDKTRYQYIFMVTDAYVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|148536432|gb|ABQ85768.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 402

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 243/404 (60%), Positives = 311/404 (76%), Gaps = 4/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G+   PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG- 59

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     
Sbjct: 60  TTDTTGTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282
           ++GGI+AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ
Sbjct: 119 FEGGIKAFVTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGG HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 179 RDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ARFDKM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|6946705|dbj|BAA90683.1| DNA gyrase subunit B [Rikenella microfusus]
          Length = 476

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 223/460 (48%), Positives = 309/460 (67%), Gaps = 11/460 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS+ L+  + R+G I+   F  G+    + V     + T
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSTDLEAVVHRQGKIFRQRFSRGVPQGDIEVI-GTTDRT 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITM 223
           GT +TF P  +IF+    +NYD L  RLREL++LN  + +++ D     + S E R    
Sbjct: 60  GTTITFKPDGEIFTQTTVYNYDILNSRLRELAYLNKGIHLNITDKREKDEESGEYRHDNY 119

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           + + G++ FV +LD +++PL++  I I G RD + I++A+++N G+ ENV  + NNI   
Sbjct: 120 YSQEGLKEFVKFLDGNREPLIEETIHITGERDGVPIEVALQYNTGFSENVHTYVNNINTI 179

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           +GGTHL+G R  LTR +  Y E S    K K  + GDD REG T+++S+K+ +P+F  QT
Sbjct: 180 EGGTHLTGFRRGLTRTLKKYAEDSGMLAKLKFEISGDDFREGLTAIISVKVAEPQFEGQT 239

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL +SEV   V++ V+  L+ +LEE+P +AK IV+KV+ A+  R AAR+ARDL +RK 
Sbjct: 240 KTKLGNSEVAGAVDNAVSAALTNYLEENPKDAKAIVQKVILAATARTAARKARDLVQRKT 299

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VL  + LPGKLADCS RD +K+E+FLVEGDSAGG+AKQGR R  QAI+PLRGKILNVE+A
Sbjct: 300 VLSGSGLPGKLADCSSRDMEKTEMFLVEGDSAGGTAKQGRDRTFQAIMPLRGKILNVEKA 359

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLT 519
              KM  ++EI  + TALG  IG +        +KLRY K+IIMTDADVDG+HI TL++T
Sbjct: 360 TDHKMYDNEEIKNIFTALGVTIGTEEDSKALNLSKLRYGKVIIMTDADVDGSHIATLIMT 419

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           FFFR+MP +I NG L+I  PPLY + +GK  +Y   +E  
Sbjct: 420 FFFRRMPDIIQNGHLFIATPPLYLVKKGKQERYCWTDEER 459


>gi|313674757|ref|YP_004052753.1| DNA topoisomerase type iia subunit b region 2 domain protein
           [Marivirga tractuosa DSM 4126]
 gi|312941455|gb|ADR20645.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Marivirga tractuosa DSM 4126]
          Length = 619

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/657 (27%), Positives = 286/657 (43%), Gaps = 60/657 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +    YD DSI+ L   + ++ RP MYIG     S    G++ ++ EV+DN+IDE + G+
Sbjct: 1   MAEFQYDEDSIKSLDWREHIRMRPGMYIGKLGDGSSPDDGIYVLVKEVIDNSIDEHMMGF 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSG 118
              I + +  D    V D GRGIP             V+     ++ GGK++  +++ S 
Sbjct: 61  GKTIEIKI-TDQRVEVRDYGRGIPLGK----------VVDCVSKINTGGKYDTGAFQKSV 109

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG   VNALS++ K++  REG      F  G+L N   VT S+    GT + F P 
Sbjct: 110 GLNGVGTKAVNALSNYFKVQAFREGQTKVAEFQRGVLTNDAQVT-SSSGRNGTLIAFEPD 168

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             +F    F    L+ ++   +FLNS + I+                  G+   +     
Sbjct: 169 ETVFKNYHFIPGFLEEQMWNYAFLNSGLTINFNG--------DKFHSANGLADLLDRKSD 220

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +       I ++G      I++AM   + Y E    F N      GGTHL+  + A+ +
Sbjct: 221 EETNRYP-IIHLKGED----IEMAMTHANQYGEEYYSFVNGQNTTQGGTHLTAFKEAIVK 275

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SE 351
            I  +  K+             D R+   + +++++ +P F SQTK KL S         
Sbjct: 276 TIRDFYGKN---------YDPSDIRQAIVAAVAVRVQEPVFESQTKTKLGSQNVAPDGPT 326

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA 408
           +R+ +  FV   L  +L  +P  A+ I K+++ +   R      +   +   +K  L   
Sbjct: 327 MRTFINDFVKKALDDFLHRNPKTAEAIQKRIMQSERERKDMAGIKKLANERAKKANLHNK 386

Query: 409 ---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
                     D        + +F+ EGDSA GS  + R  + QA+  LRGK LN      
Sbjct: 387 KLRDCRVHYDDNKHDRKDDTMIFITEGDSASGSITKSRDVQTQAVFSLRGKPLNCYGKTK 446

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL    G     +  LRY K+II TDADVDG HIR LL+TFF +  
Sbjct: 447 KLVYENEEFNLLQHALNIEEG-----LEGLRYRKVIIATDADVDGMHIRLLLMTFFLQFF 501

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P L+ +G LYI+  PL+ +   K   Y   +E     +     + EI  F    G IS  
Sbjct: 502 PDLVRDGHLYILDTPLFRVRNKKETIYCYSDEERRRAIEKIGKAAEITRF-KGLGEISPE 560

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           +   FI++ +K+D +I +      K  +   + +     +      + +   L   L
Sbjct: 561 EFGEFINENIKLDPIILNNQTKI-KDLLTFYMGTNTMERQQFIIDKLRVEKDLEEEL 616


>gi|219555776|ref|ZP_03534852.1| DNA gyrase subunit B [Mycobacterium tuberculosis T17]
          Length = 406

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/366 (38%), Positives = 205/366 (56%), Gaps = 34/366 (9%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
                  Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA 
Sbjct: 44  KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 102

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            + V L  DG   V+D+GRGIP   H   GI   +V+MT+LHAGGKF+  +Y +SGGLHG
Sbjct: 103 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 161

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F
Sbjct: 162 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 219

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214
              +++++T+  RL+E++FLN  + I+L D+R                            
Sbjct: 220 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 279

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +  T  Y GG+  FV +++R K  +  S +   G      +++A++WN GY E+
Sbjct: 280 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAIQWNAGYSES 339

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+
Sbjct: 340 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 399

Query: 333 KMPDPR 338
           K+ +P+
Sbjct: 400 KVSEPQ 405


>gi|148971429|gb|ABR20252.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 198/423 (46%), Positives = 277/423 (65%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L+L I +EG ++   +  G+  
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSQTLELEIHQEGKLHRQVYHQGVPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G+     GT + F P   I     F +DTL HR RE +FLN  + I  + +   
Sbjct: 61  APLAVVGTTT-LRGTSIRFWPDLSIMETDTFLFDTLAHRFREQAFLNPILTI--VLREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GGI+++  +L  +KK + +     +        ++A ++ +   +E +L 
Sbjct: 118 SLREETFHFEGGIKSYNEFLKENKKTIHEVLFFRRELPTGAQFEVAFQYQETTDNETILG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  K+GGTH+ G R+ALTR I  +++    +K ++    G+D REG T+V+S+++P
Sbjct: 178 FANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELR--GEDIREGLTAVVSVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL SS V   +E+F+ + +    EE P  AK I  K +  +M R+AAR+A
Sbjct: 236 DPQFEGQTKAKLGSSWVAGAMETFLAEEMQERFEEFPQIAKKIADKGIQTAMAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++L +RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 296 KELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAILPLKG 355

Query: 456 KILNVERA-RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNV++A   ++ ++  E+  L+TA+G G+G + +    LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVKKAGGAERFVTHDEVRALVTAVGCGLGNEEYSQKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|17367217|sp|Q9X3Y5|GYRB_BACMY RecName: Full=DNA gyrase subunit B
 gi|4588024|gb|AAD25957.1|AF090332_1 gyrase B subunit [Bacillus mycoides]
          Length = 404

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 202/407 (49%), Positives = 289/407 (71%), Gaps = 4/407 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+   YKVSGGLHGVG SVVNALS+ L++ + R+G I+   +  G+    L V G
Sbjct: 1   HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLRVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              + TGT   F P S+IF+    + +DTL  R+REL+FLN ++++++ DKR  + ++  
Sbjct: 61  ET-DRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE- 118

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI+++V +L+R K+P+ + P+ + GS+D I +++A+++N+GY  ++  FTNNI  
Sbjct: 119 FHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  Q
Sbjct: 179 YEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SE R++ ES  ++    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK
Sbjct: 239 TKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+
Sbjct: 299 SALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           AR DK+LS+ E+ T+ITA+GT IG D F I K RYHK+IIMTDADVD
Sbjct: 359 ARLDKILSNDEVRTIITAIGTNIGGD-FAIEKARYHKVIIMTDADVD 404


>gi|13358818|dbj|BAB33155.1| DNA gyrase B subunit [Flavobacterium ferrugineum]
          Length = 481

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 220/474 (46%), Positives = 313/474 (66%), Gaps = 13/474 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVGVS VNALS+ L + ++REG ++E  +  G+   P+ V G +  +T
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTHLHVTVQREGKVFEQEYRIGVPQYPVRVVGESE-NT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----DKRSPEPREITMFY 225
           GT V F P   IF+   +N + L+ RLRELSFLN  V+I+L      +   +P   + F 
Sbjct: 60  GTRVQFWPDDTIFTSTVYNKEILEGRLRELSFLNRGVRINLTDLREQEEDGQPYTKSFFS 119

Query: 226 KGGIEAFVSYLDRH--KKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIP 281
           +GGI  FV  LD +  +  L+   I ++G  +N  +++++A+ +N+ Y E++  + NNI 
Sbjct: 120 EGGIVEFVEMLDTNAGRTTLIPKVISVEGHDNNTNVAVEVALSYNNSYAEHIYSYVNNIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH+SG R ALTR   +Y +++   +K K  + GDD REG ++++S+K+P+P+F  
Sbjct: 180 TIEGGTHVSGFRRALTRVFKAYGDRNSLFEKAKVEIEGDDFREGLSAIISVKVPEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +S+V  VV+S V+  L A+LEE+P EAK IV KV+ A+  R AAR+AR+L +R
Sbjct: 240 QTKTKLGNSDVMGVVDSTVSRVLEAYLEENPKEAKSIVAKVILAAQARAAARKARELVQR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K VL    LPGKLADCS+RD +K ELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE
Sbjct: 300 KTVLTGGGLPGKLADCSDRDAEKCELFLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLL 517
           +A   K+  ++EI  + TALG  +G           KLRYHK+IIMTDADVDG+HI TL+
Sbjct: 360 KAMEHKIYENEEIRNMYTALGVTVGTPEDPKELNLTKLRYHKLIIMTDADVDGSHIATLI 419

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           LTF FR M +++  G++Y+ +PPLY + +GK   Y  +E   +  +      +E
Sbjct: 420 LTFIFRYMKAMVEQGYVYLAQPPLYLVKKGKEAAYAFNETQRKALVEKLGGGKE 473


>gi|190148812|gb|ACE63381.1| DNA gyrase B subunit [Thermobifida halotolerans]
          Length = 423

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 207/425 (48%), Positives = 284/425 (66%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH GGKF+ KSY VSGGLHGVGVSVVNALS+ L++ ++R+G ++   +      
Sbjct: 1   EVIMTVLHVGGKFDSKSYAVSGGLHGVGVSVVNALSTRLEVEVRRDGYVWTQCYEMTQPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L   G + ++TGT++TF     IF    +N++TL  RL+E++FLN  + I++ D+R  
Sbjct: 61  TDLTR-GESTDETGTQITFWADGSIFETTTYNFETLSRRLQEMAFLNRGLSITIRDERPE 119

Query: 217 ----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y+GG+  FV +++  K+P   + I  + S D I+ ++AM+WN  Y  +
Sbjct: 120 FVGDSPVTQTYHYEGGLSDFVHHINATKEPARSTVIAFEDSGDGIAAEIAMQWNQSYTSS 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       +    ++ GDD REG T+++S+
Sbjct: 180 VHTFANTINTAEGGTHEEGFRAALTSIVNRYARDQKLLRDKDDNLTGDDIREGLTAIVSV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   ++ L  W + +P EAK IV K   A+  R AA
Sbjct: 240 KLTDPQFEGQTKTKLGNTEAKSFVQKVCHEHLRDWFDRNPGEAKDIVTKANQAARARIAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKLADC   DP++SE+++VEGDSAGGSAK GR    QAILP
Sbjct: 300 RQARDLTRRKTLLESTSLPGKLADCQSTDPERSEVYIVEGDSAGGSAKGGRDPHYQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE+AR D++L + E+  +ITALGTG+  D FDI KLRYHKII+MTDADVDG+H
Sbjct: 360 IRGKILNVEKARIDRILKNNEVQAIITALGTGV-HDDFDIEKLRYHKIILMTDADVDGSH 418

Query: 513 IRTLL 517
           IRTLL
Sbjct: 419 IRTLL 423


>gi|328349717|emb|CBY89166.1| GyrB protein [Flavobacterium sp. R-38388]
          Length = 427

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 201/428 (46%), Positives = 278/428 (64%), Gaps = 11/428 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
            D+HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS  L+  +   +G
Sbjct: 1   VDIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSADG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202
            +YE  +  G    P+   G   +  GT VTF P   IF+   DF YDTL  R+RELSFL
Sbjct: 61  KVYEQEYERGKALYPVKQIG-TTDKRGTIVTFYPDDTIFTQTVDFTYDTLSARMRELSFL 119

Query: 203 NSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKREVDKEGNFVSEIFHSTEGLKEYIRYLDANREPIINHVISMDSDKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGLLDKLKFEIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +AKII
Sbjct: 240 GDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDAKII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NK 494
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +        +K
Sbjct: 360 AKQGRDRMFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTIGTEEDSKALNLSK 419

Query: 495 LRYHKIII 502
           LRYHK++I
Sbjct: 420 LRYHKVVI 427


>gi|294054869|ref|YP_003548527.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614202|gb|ADE54357.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Coraliomargarita akajimensis DSM 45221]
          Length = 616

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 181/612 (29%), Positives = 283/612 (46%), Gaps = 56/612 (9%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYAD 62
           +++Y  DSI+ L   + ++ RP MYIG     S    G++ ++ EV+DN+IDE + G+  
Sbjct: 2   SANYTEDSIKSLDWKEHIRLRPGMYIGKLGDGSSQDDGIYILLKEVIDNSIDEFVMGHGK 61

Query: 63  IITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           II V +  DG+  +V D GRGIP    K+     A  I T    G K++ +++K S GL+
Sbjct: 62  IIEVNI--DGTHVSVRDYGRGIPLGKLKD----CASKINT----GAKYDSEAFKKSVGLN 111

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+  VNALS   +++  REG    ++F  G +        +A  D GT + F P  DI
Sbjct: 112 GVGIKAVNALSKEFEIQAYREGKTRCVAFAQGEVTTEDKRDKAADADNGTALRFDPDPDI 171

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F  D ++  L   ++LNS + I    K+             G+   +        
Sbjct: 172 FGKCRFREDYVEDMLWNYAYLNSGLTIVYNGKK--------FKSDKGLHDLLENKLDG-- 221

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
                P+       +  +++A     GY E+   F N      GGTHL+  R AL + + 
Sbjct: 222 ----DPLYPIIHLKDKDVEIAFTHASGYGEDYYSFVNGQHTTMGGTHLAAFREALAKTVK 277

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------RS 354
            + +K              D R    + +S+K+ +P F SQTK KL S E+       R+
Sbjct: 278 DFYKK---------DFDAVDIRTSICAAVSVKVEEPVFESQTKTKLGSLEMGPKGPTVRT 328

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA----ARRARDLTRR-KGVLDIAS 409
            + +F+   L  +L   P  AK ++ K+ ++   R       + AR+  ++ K       
Sbjct: 329 FMNNFIKQALDNYLHRSPETAKELLSKIQESERNRKELKGIQKLARERAKKAKIHNKKLR 388

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
                 D  +     S LF+ EGDSA GS  + R    QA+  L+GK LN        + 
Sbjct: 389 DCRIHLDTKKEGRLDSTLFITEGDSASGSITKARDVNTQAVFSLKGKPLNSFGLTKKVVY 448

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            ++E   L  AL    G     ++ LRY+ ++I TDADVDG HIR LL+TFF +  P LI
Sbjct: 449 ENEEFNLLQDALNIEDG-----LDGLRYNNVVIATDADVDGMHIRLLLITFFLQFFPELI 503

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G L+I++ PL+ +   K  +Y   +E     +       EI  F    G IS ++  N
Sbjct: 504 RQGHLHILQTPLFRVRNKKVTRYCYSDEERLAAIEECKPKPEITRF-KGLGEISPDEFSN 562

Query: 590 FIDDALKIDKLI 601
           FI   +++D +I
Sbjct: 563 FIGKNIRLDPVI 574


>gi|33187287|gb|AAP97506.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 403

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 205/409 (50%), Positives = 281/409 (68%), Gaps = 6/409 (1%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V
Sbjct: 1   VLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGQVISEFGV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +    
Sbjct: 61  IGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--YE 117

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NN  
Sbjct: 118 SFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNXK 175

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +V+S+K+P+P+F  
Sbjct: 176 TPDGGTHEAGXRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAVVSVKVPEPQFEG 235

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR+
Sbjct: 236 QTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRK 295

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE
Sbjct: 296 KESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE 355

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           +AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG
Sbjct: 356 KARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDG 403


>gi|4589345|gb|AAD26459.1|AF136387_1 gyrase B subunit [Bacillus cereus]
          Length = 407

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 204/409 (49%), Positives = 291/409 (71%), Gaps = 4/409 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+   YKVSGGLHGVG SVVNALS+ L++ + R+G I+   +  GI    L V G   + 
Sbjct: 2   FDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DK 60

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+G
Sbjct: 61  TGTITRFKPDPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEG 119

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+++V +L+R K+P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGT
Sbjct: 120 GIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGT 179

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL
Sbjct: 180 HEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SE R++ ES  ++    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L++
Sbjct: 240 GNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEV 299

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           +SLPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK
Sbjct: 300 SSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDK 359

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           +LS+ E+ T+ITA+GT IG D FDI K RYHK+IIMTDADVDG+HIRTL
Sbjct: 360 ILSNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGSHIRTL 407


>gi|2196800|gb|AAB80817.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 246/422 (58%), Positives = 320/422 (75%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L A  K+   SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLMALKKYEDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLVENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML SQE+ TLITALG GIG+D ++ +K RY  I ++TDA VDG+HI T
Sbjct: 358 KILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYQNIFMVTDALVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|148536434|gb|ABQ85769.1| DNA gyrase subunit B [Aliivibrio salmonicida]
          Length = 402

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 243/404 (60%), Positives = 311/404 (76%), Gaps = 4/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G+   PL V G 
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG- 59

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             + TGT++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     
Sbjct: 60  TTDTTGTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282
           ++GGI+AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ
Sbjct: 119 FEGGIKAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGG HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 179 RDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ARFDKM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|289450647|ref|YP_003475279.1| DNA gyrase subunit B, C-terminal domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185194|gb|ADC91619.1| DNA gyrase, B subunit, C-terminal domain protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 662

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/608 (28%), Positives = 285/608 (46%), Gaps = 28/608 (4%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
              YD  SI  LKG + V+ RP +  G  D   G  H  +E+L N+IDE+ EGY D+I V
Sbjct: 4   QQQYDNASISSLKGAERVRLRPGVIFGS-DSLEGCEHAFFEILSNSIDEAREGYGDVINV 62

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK---SYKVSGGLHGV 123
               D S  V D GRGIP D + +E     E++   L+AGGK+N     +Y+ S GL+G+
Sbjct: 63  HRYADNSIEVEDFGRGIPLDFNPKENRYNWELVYCELYAGGKYNTNNGENYEFSLGLNGL 122

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G       S +  +++ R+G  Y + F  G     L    +    TGT   FLP  ++F+
Sbjct: 123 GACATQYASEYFDVQVMRDGYKYSLHFEKGENVGGLSKEPTRFKRTGTIQHFLPDREVFT 182

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
                 +     L+  + +N+ V  + ID  + E      FY  G+  +++ LD  +  L
Sbjct: 183 DIAIPTEYFTETLKRQAVVNNGVHFNFIDDITGEK--YEFFYADGVRDYINELDAGRGML 240

Query: 244 MQSPIRI-------QGSRDNISIDLAMR-WNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                         +  +    +   +    +     +  + N+   + GG+    +RSA
Sbjct: 241 QNPIYFTASGQGQDRADKPMYKVKATVALTFNNEINGMEYYHNSSFLEHGGSPDKAVRSA 300

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +T +     +     K ++  +  +D ++    ++S       + +QTK+ + +  ++  
Sbjct: 301 ITGEFDRQAKNMNKYKANESKLTFNDIQDSLLIIISSFSTSTSYENQTKKAINNKFIQDF 360

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV--LDIASLPGK 413
           +   +   L  W  E   EA+ ++++VL     R+ A + R   ++K +  +DI +   K
Sbjct: 361 LTEQLRSNLEIWFIERREEAERVLEQVLINKRSRENAEKQRLSIKKKLMGSVDITNRIKK 420

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
             DC  +D  + EL++VEGDSA GS K GR  E QAI+ +RGKILN  +A    +  S+ 
Sbjct: 421 FVDCRTKDLNRRELYIVEGDSALGSCKLGRDAEFQAIIAVRGKILNCLKADLATIFKSEI 480

Query: 474 IGTLITALGTGIGQDS--------FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           I  LI  LG G+   S        FD+N LR+ KIII TDADVDG  IRTL+LT F+R +
Sbjct: 481 ITNLIKVLGCGVEIKSKQNKELTAFDLNALRWDKIIICTDADVDGYQIRTLILTMFYRLL 540

Query: 526 PSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           P+L+  G +YI + PL+ I     R +   +  +E+   + + N +            G 
Sbjct: 541 PTLLAEGRVYIAESPLFEIVATKGRKEVTHFAYNEKEKAEIIRNLAGYRLNIQRSKGLGE 600

Query: 582 ISKNDLRN 589
                +  
Sbjct: 601 NEPEMMWE 608



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
            +  + +                 + I ++    +++QR KGLGE     +WETT+NP T
Sbjct: 556 LFEIVATKGRKEVTHFAYNEKEKAEIIRNLAGYRLNIQRSKGLGENEPEMMWETTMNPQT 615

Query: 760 RSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795
           R L++V     D  QA   F  L+GD +  R+E I+ N
Sbjct: 616 RRLIQVMPESEDTMQAK--FDLLLGDNLTGRKEHIENN 651


>gi|2196794|gb|AAB80814.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 247/422 (58%), Positives = 319/422 (75%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L A  KF   SY VSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLMALKKFEDNSYDVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RY  I + TDA VDG+HI T
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYQNIFMATDAYVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|148971307|gb|ABR20191.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 245/421 (58%), Positives = 305/421 (72%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF ++   VSGGLHGVGVSVVNALSS L L I R G ++E  + +G   
Sbjct: 1   EVIMTVLHAGGKFRRQQLYVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   + +GT V F PS   FS   FN + L  RLRELSFLN+ V+I L D+R  
Sbjct: 61  YPLRVIGET-DSSGTTVRFWPSELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
              E    Y+GG+  FV Y++  K  L +       + + I +++A++WN+ Y ENV CF
Sbjct: 119 -NLEHVYDYEGGLSEFVKYINEGKTHLNEIFHFTADTENGIGVEVALQWNESYQENVRCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+FSSQTKEKLVSSEV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR
Sbjct: 238 PKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRK  L        LADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILP +GK
Sbjct: 298 EMTRRKSALAYCRFTRLLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPFKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVERARFDKM+SSQE+GTLITALG GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTL
Sbjct: 358 ILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|332800599|emb|CBY89789.1| GyrB protein [Flavobacterium psychrolimnae]
          Length = 427

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 197/428 (46%), Positives = 277/428 (64%), Gaps = 11/428 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            IYE  +  G    P+   G      GT VTF P   IF+    ++YDTL  R+RELSFL
Sbjct: 61  KIYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFL 119

Query: 203 NSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKREKDKDGNFVSEVFHSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINK 494
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG        +I K
Sbjct: 360 AKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTAEDSKALNIEK 419

Query: 495 LRYHKIII 502
           LRYHK+II
Sbjct: 420 LRYHKVII 427


>gi|148762423|dbj|BAF63913.1| DNA gyrase subunit B [Virgibacillus proomii]
          Length = 404

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 197/402 (49%), Positives = 280/402 (69%), Gaps = 4/402 (0%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH+++E++DN+IDE+L GY D I V +  D S TV DNGRGIP D+ K+ G  A EVI
Sbjct: 6   GLHHLVWEIIDNSIDEALAGYCDRIEVIVEKDNSITVKDNGRGIPVDIQKKTGRPALEVI 65

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF    YKVSGGLHGVG SVVNALSS L++ + R+  I+ ++F  G+    +
Sbjct: 66  MTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSSKLEVYVHRDNKIHYLAFERGVPQGEI 125

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
            + G   + TGT V F+P + IF+   +FN+D L  RLREL+FLN  + I+L DKR+ + 
Sbjct: 126 QIVGKT-DITGTIVHFVPDTTIFTETAEFNFDILSQRLRELAFLNKGITIALEDKRT-DR 183

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
             ++  Y+GGI ++V +++++K+ L   P   +G    I++++A+++NDG+  N+  F N
Sbjct: 184 EPVSYHYEGGISSYVEFINQNKEVLH-EPFYAEGEAQGITVEIAIQYNDGFTSNLYSFAN 242

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTH SG ++ LTR I  Y  K+   K++  ++ G+D REG T+++S+K P+P+
Sbjct: 243 NIHTYEGGTHESGFKTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPNPQ 302

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +SEVR+V +S  ++  S +L E+P  AKIIV K L AS  R AA++AR+L
Sbjct: 303 FEGQTKTKLGNSEVRTVTDSVFSELFSKFLFENPDVAKIIVDKGLMASRARAAAKKAREL 362

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           TRRKG L+I++LPGKLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 363 TRRKGALEISNLPGKLADCSSKDASISELYIVEGDSAGGSAK 404


>gi|148616454|gb|ABQ96970.1| GyrB [Nocardiopsis halophila]
          Length = 424

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 206/425 (48%), Positives = 283/425 (66%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALSS L+  ++R+G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSSRLEAEVRRDGHVWRQHYEVTRPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             +   G    +TGT++TF     IF    ++++TL  R++E++FLN  + I+L D+R  
Sbjct: 62  ADVAK-GEETAETGTQITFWADPTIFETTTYSFETLARRMQEMAFLNKGLSITLRDERPE 120

Query: 217 E----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y+ G+  FV +++  K+P   S I  +   + IS+++AM+WN  Y  +
Sbjct: 121 FLADGPVVQTFHYEDGLVDFVRHINAKKEPSHASIIDFEEDGEGISVEIAMQWNQPYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       ++   ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRTALTSVVNRYARDQKLLREKDDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   ++ +  W E +P EAK IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQRVTHEHVRDWFERNPGEAKDIVSKASQAARARIAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P+KSE+++VEGDSAGGSAK GR    QAILP
Sbjct: 301 RQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPLYQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKII+MTDADVDG+H
Sbjct: 361 IRGKILNVEKARIDRILKNNEVQAIITALGTGI-HDDFDIEKLRYHKIILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|33187335|gb|AAP97530.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 400

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 202/406 (49%), Positives = 279/406 (68%), Gaps = 6/406 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGQVISEFG 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +   
Sbjct: 61  VIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--H 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI
Sbjct: 118 ESFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNI 175

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTH +G R  LTR I++Y+E +  +++    + GDD REG  +++S+K+P+P+F 
Sbjct: 176 KTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFE 235

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR
Sbjct: 236 GQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTR 295

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           +K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 296 KKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNV 355

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           E+AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDA
Sbjct: 356 EKARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDA 400


>gi|110612657|gb|ABG78291.1| GyrB [uncultured bacterium]
          Length = 397

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 244/400 (61%), Positives = 308/400 (77%), Gaps = 3/400 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVG+SVVNALS+ L L I+R G++YE  + +G+   PL +TG+   D
Sbjct: 1   FDDNSYKVSGGLHGVGISVVNALSAELHLAIRRNGHLYEQDYRDGVPLAPLAITGNV-QD 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGTEV F PS   F+   F+YD L  RLRELSFLNS V+I L D+R+ +    T  Y GG
Sbjct: 60  TGTEVWFKPSPATFTNIVFHYDVLAKRLRELSFLNSGVRIHLFDERTEKQ--DTFEYVGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+R+K P++     + G RDNI ++L+++WND + ENV CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEHLNRNKTPIIPMVFSVNGVRDNIGVELSIQWNDSFQENVFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ LTR + +Y+EK   +KK K    GDD REG T+VLS+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAGLTRTLNNYIEKEGLAKKAKIVTTGDDIREGLTAVLSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES V +  + +L E+P  AK IV K+ DA+  RDAARRAR++ RRKG LDIA
Sbjct: 238 SSEVKSAVESLVAEKFNDFLLENPSAAKTIVGKIFDAARARDAARRAREMVRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           LSSQE+ TLITALG GIG + +D +K+RYH+IIIMTDADV
Sbjct: 358 LSSQEVATLITALGCGIGPEEYDPDKVRYHRIIIMTDADV 397


>gi|307939332|gb|ADN95857.1| DNA gyrase B [Hymenobacter aerophilus]
          Length = 435

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 218/436 (50%), Positives = 293/436 (67%), Gaps = 19/436 (4%)

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT LHAGGKF++ SYKVSGGLHGVGVS VNALS  LK+ ++R G +YE  +  GI   P
Sbjct: 1   IMTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSQDLKVTVRRNGKVYEQEYKIGIPQYP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID-----K 213
           +   G   ++ GT+V FLP   IFS   + Y T+  RLRELSFLNS ++++L D     +
Sbjct: 61  VRELG-TTDEHGTQVEFLPDDTIFSEHVYKYATIASRLRELSFLNSGIRLTLTDRREPGE 119

Query: 214 RSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
              E R    F  GG+  FV Y     +  LM +PI +   +    +++A+++ND Y EN
Sbjct: 120 NGAEFRNDEFFSTGGLAEFVQYLDGTERHALMPAPIHVINEKGITPVEVALQYNDSYQEN 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  + NNI   +GGTH++G RSALTR + +Y +KS   +K K  + G+D REG T+V+S+
Sbjct: 180 IFSYVNNINTHEGGTHVAGFRSALTRTLKAYADKSGKLEKAKVEISGEDFREGLTAVISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV   V + V + L+ +LEE+P EA IIV+KV+ A+  R AA
Sbjct: 240 KVAEPQFEGQTKAKLGNNEVNGAVNTAVGEILAQYLEENPKEAGIIVEKVILAAKARIAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++ +RK VL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILP
Sbjct: 300 RKAREMVQRKSVLGSTSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF------------DINKLRYHKI 500
           LRGKILNVE+A+  ++L ++EI  +ITALG   G  +             +I KLRYHK+
Sbjct: 360 LRGKILNVEKAQEHRILENEEIRNMITALGVSFGVAADPELGIEADSKALNIKKLRYHKV 419

Query: 501 IIMTDADVDGAHIRTL 516
           IIMTDADVDG+HIRTL
Sbjct: 420 IIMTDADVDGSHIRTL 435


>gi|301477616|dbj|BAJ12093.1| DNA gyrase subunit beta [Pandoraea sp. TA04]
          Length = 424

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 241/427 (56%), Positives = 316/427 (74%), Gaps = 15/427 (3%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGS 164
           SGGLHGVGVS VNALS++LKL ++R+G  + M F  G+              +PL + G 
Sbjct: 1   SGGLHGVGVSCVNALSTYLKLTVRRDGKKHFMEFHQGVPQNRELEMVDGVETSPLKLLGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             +  GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +       
Sbjct: 61  T-DKRGTEVHFLADETIFGKVEYHYDILAKRMRELSFLNNGVRIRLTDQRTGKE--DDFA 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           + GG++ FV Y+++ K  L  +   + G RD I +++AM+WND Y+E VLCFTNNIPQ+D
Sbjct: 118 FGGGVKGFVEYINKSKTVLHPTVFHVMGERDGIGVEVAMQWNDSYNETVLCFTNNIPQRD 177

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG+HL+GLR+A+TR I  Y+ +S  +KK K    GDD REG T VLS+K+P+P+FSSQTK
Sbjct: 178 GGSHLTGLRAAMTRVINKYIAESEIAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQTK 237

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEVR+ VE +V   L  +L+E P +AKII  K+++A+  RDAAR+AR++TRRKGV
Sbjct: 238 DKLVSSEVRAPVEEYVAKALEDFLQETPNDAKIICTKIVEAARARDAARKAREMTRRKGV 297

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR
Sbjct: 298 LDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAR 357

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           FDK++SS++I TLITALG GIG+D ++I+KLRYH+IIIMTDADVDGAHIRTLLLTF +RQ
Sbjct: 358 FDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQ 417

Query: 525 MPSLIHN 531
           +P LI  
Sbjct: 418 VPELIER 424


>gi|148470215|gb|ABQ66055.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 201/423 (47%), Positives = 278/423 (65%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L+L I +EG ++   +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSRRLELEIYQEGRLHRQVYHQGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G+     GT + F P   I     F +DTL HR REL+FLN  + I  + +   
Sbjct: 61  APLSVVGTTA-LRGTSIRFWPDLSIMETDTFLFDTLAHRFRELAFLNPILTI--VLREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE-NVLC 275
             RE T  ++GGI+++  +L+ +KK + +     +        ++A ++ +      +L 
Sbjct: 118 SLREETFHFEGGIKSYNEFLNENKKTIHEVLFFRRELPSGAQFEVAFQYQETTDNETILG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  K+GGTH+ G R+ALTR I  +++    +K ++    G+D REG T+V+S+++P
Sbjct: 178 FANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELR--GEDIREGLTAVVSVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL SS V   +E+F+ + +    EE P  AK I  K +  +M R+AAR+A
Sbjct: 236 DPQFEGQTKAKLGSSWVSGAMETFLAEEMQERFEEFPQIAKKIADKAIQTAMAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++L +RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 296 KELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAILPLKG 355

Query: 456 KILNVERA-RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+A   ++ ++  E+  LITA+G G+G + +    LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|148470203|gb|ABQ66049.1| gyrase b [uncultured bacterium]
 gi|148971401|gb|ABR20238.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 197/423 (46%), Positives = 287/423 (67%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++G  ++ ++  G  +
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLEIDQKGKHFKQTYHKGEPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL + G + + TGT + F P   I    +F++D L HR REL +LN ++ I L ++ + 
Sbjct: 61  APLSIAGDS-DKTGTTIRFYPDMSIMETDEFSFDVLAHRFRELGYLNPALTIVLTEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+ +L+ +K+ + ++    +   +    +++ ++ D    E +L 
Sbjct: 119 -LRETVFHDEGGIRSFLVFLNENKRTIHETLFFRKTFENGSIFEVSFQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GG+H+ G RSALTR +  ++     +K ++    G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGSHVKGFRSALTRVVNRFIRDKNLNKGEEVR--GEDIREGLSAIISIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +ESF+ + L    E+    A+ I  K + ++  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVAGAMESFLAESLEDAFEKQGAVARAIADKAILSAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+ +  +K ++  E+  LITA+G G+G++ F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKTKGIEKFITHDEVRALITAVGCGLGEEDFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|332800575|emb|CBY89777.1| GyrB protein [Flavobacterium gillisiae]
          Length = 427

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 198/428 (46%), Positives = 276/428 (64%), Gaps = 11/428 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L   +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLTATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202
            +Y+  +  G    P+   G      GT VTF P + IF+   DF YDTL  R+RELS+L
Sbjct: 61  KVYQQEYEKGKALYPVKQIGETT-KRGTIVTFYPDNTIFTQTTDFTYDTLSARMRELSYL 119

Query: 203 NSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR                 G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKRELDKDGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDNEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINK 494
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG        +I K
Sbjct: 360 AKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTAEDSKALNIEK 419

Query: 495 LRYHKIII 502
           LRYHK+II
Sbjct: 420 LRYHKVII 427


>gi|301477626|dbj|BAJ12098.1| DNA gyrase subunit beta [Pandoraea sp. TA02]
          Length = 422

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 241/425 (56%), Positives = 316/425 (74%), Gaps = 15/425 (3%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGS 164
           SGGLHGVGVS VNALS++LKL ++R+G  + M F  G+              +PL + G 
Sbjct: 1   SGGLHGVGVSCVNALSTYLKLTVRRDGKKHFMEFHQGVPQNRELEMVDGVETSPLKLLGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             +  GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +       
Sbjct: 61  T-DKRGTEVHFLADETIFGKVEYHYDILAKRMRELSFLNNGVRIRLTDQRTGKE--DDFA 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           + GG++ FV Y+++ K  L  +   + G RD I +++AM+WND Y+E VLCFTNNIPQ+D
Sbjct: 118 FGGGVKGFVEYINKSKTVLHPTVFHVMGERDGIGVEVAMQWNDSYNETVLCFTNNIPQRD 177

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG+HL+GLR+A+TR I  Y+ +S  +KK K    GDD REG T VLS+K+P+P+FSSQTK
Sbjct: 178 GGSHLTGLRAAMTRVINKYIAESEIAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQTK 237

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEVR+ VE +V   L  +L+E P +AKII  K+++A+  RDAAR+AR++TRRKGV
Sbjct: 238 DKLVSSEVRAPVEEYVAKALEDFLQETPNDAKIICTKIVEAARARDAARKAREMTRRKGV 297

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR
Sbjct: 298 LDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAR 357

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
           FDK++SS++I TLITALG GIG+D ++I+KLRYH+IIIMTDADVDGAHIRTLLLTF +RQ
Sbjct: 358 FDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQ 417

Query: 525 MPSLI 529
           +P LI
Sbjct: 418 VPELI 422


>gi|33187313|gb|AAP97519.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei]
          Length = 400

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 204/406 (50%), Positives = 280/406 (68%), Gaps = 6/406 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V G 
Sbjct: 1   AGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGK 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +    +  
Sbjct: 61  SK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFH 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +KGGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI   D
Sbjct: 118 FKGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPD 175

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F  QTK
Sbjct: 176 GGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTK 235

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  
Sbjct: 236 GKLGSTYVRPIVSKASFEYLTKYFEENPVEAKAIMNKALMAARGREAAKKARELTRKKES 295

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR
Sbjct: 296 LSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKAR 355

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG
Sbjct: 356 LDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDG 400


>gi|18157438|dbj|BAB83771.1| DNA gyrase subunit B [Rhodobacter veldkampii]
          Length = 307

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 181/307 (58%), Positives = 223/307 (72%), Gaps = 1/307 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DN IDE+L G+A+ + V ++ D S +V DNGRGIPTD+H  EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNGIDEALAGHANYVHVKIHADSSVSVRDNGRGIPTDIHAGEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+LRI R G  +   F++G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSEWLELRIWRNGKEHYAKFVHG 120

Query: 154 ILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
               PL V G  A  + GTEV FL S+  FS  D+ + TL++RLREL+FLNS V+I L D
Sbjct: 121 DTVEPLRVVGDAAPGEKGTEVRFLASTQTFSNLDYVFKTLENRLRELAFLNSGVRIILED 180

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R  EP    + Y+GG+  FV YLDR K  +M  PI I G R  I +++AM WND YHE 
Sbjct: 181 ERPVEPLRTELMYEGGVREFVRYLDRSKASVMAEPIFITGERGGIGVEVAMWWNDSYHET 240

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           VL FTNNIPQ+DGGTHL+G R ALTR I +Y + S  +KK+K    GDD REG T VLS+
Sbjct: 241 VLPFTNNIPQRDGGTHLAGFRGALTRTINAYAQSSGIAKKEKVDFTGDDAREGLTCVLSV 300

Query: 333 KMPDPRF 339
           K+PDP+F
Sbjct: 301 KVPDPKF 307


>gi|33145990|emb|CAD57629.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 405

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 244/405 (60%), Positives = 310/405 (76%), Gaps = 3/405 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKFN  SYKVSGGLHGVGVSVVNAL   + L I R G I+  ++ +G    PL V G  
Sbjct: 3   GGKFNDNSYKVSGGLHGVGVSVVNALPKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGDT 62

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGTE+ F P  + FS   F+YD L  RLRELSFLNS V I LID+R  E +     +
Sbjct: 63  -DKTGTEIRFWPGEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMF 120

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+D
Sbjct: 121 EGGIQAFVDHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRD 180

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK
Sbjct: 181 GGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTK 240

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VE  + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG 
Sbjct: 241 DKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKGA 300

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 301 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 360

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           FDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIM DADVD
Sbjct: 361 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 405


>gi|319955666|ref|YP_004166933.1| DNA topoisomerase type iia subunit b region 2 domain protein
           [Cellulophaga algicola DSM 14237]
 gi|319424326|gb|ADV51435.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Cellulophaga algicola DSM 14237]
          Length = 618

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/666 (27%), Positives = 305/666 (45%), Gaps = 68/666 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS+N     Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EV+DN IDE 
Sbjct: 1   MSENT---DYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVVDNCIDEF 57

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I +++  D   +V D GRGIP            +V+ ++++ GGK++ +++K 
Sbjct: 58  VMGSGRTIDISI-KDNLVSVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKK 108

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS++ K+   R+  +    F  G L       G      GT+V+F+
Sbjct: 109 SVGLNGVGTKAVNALSTFFKVESSRDNQLKTAEFHQGNLVQE-EGPGETSKRKGTKVSFI 167

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   IF    +  + ++  L+   +LN  + I    ++         F + G++  +   
Sbjct: 168 PDEVIFKKYKYRNEYIERMLKNYVYLNPGLTIVFNGEK--------FFSENGLKDLLED- 218

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + + + ++   I ++G    ++I         Y E    F N      GGTH S  R A+
Sbjct: 219 NNNMEDMLYPIIHLKGDDIEVAIT---HSKTQYSEEYHSFVNGQHTTQGGTHQSAFREAI 275

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + I  +  KS+ +          D R+   S ++IK+ +P F SQTK KL S+++    
Sbjct: 276 AKTIRDFYGKSYDAS---------DIRKSIISAIAIKVMEPVFESQTKTKLGSTDMGGEF 326

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRR 401
              R+ +  F+   L  +L ++P  A+ + +K++ A   R         A  RA+     
Sbjct: 327 PTVRTYINDFIGTKLDNYLHKNPDTAEKLQRKIMQAEKERKDLSGIRKLARDRAKKSNLH 386

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
              L    +   LAD       +S LF+ EGDSA GS  + R    QA+  LRGK LN  
Sbjct: 387 NKKLRDCRV--HLADIKNNRYLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSY 444

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
                 +  ++E   L  AL          +  LRY+KI+I TDADVDG HIR LL+TFF
Sbjct: 445 GMSKKIVYENEEFNLLQAALNI-----EDSMEDLRYNKIVIATDADVDGMHIRLLLITFF 499

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
            +  P LI    LYI++ PL+ +   K   Y    E  +  +   S   EI  F    G 
Sbjct: 500 LQFFPELIKENHLYILQTPLFRVRNKKQTFYCYSPEEKKAAMEALSGKPEITRF-KGLGE 558

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS ++ ++FI + ++++ ++ D   + +        +   +  ++  +    +   L   
Sbjct: 559 ISPDEFQHFIGEDIRLEPVMLDKNMSIES-------LLEFYMGKNTPDRQKFIIENLKVE 611

Query: 642 LNFIAE 647
           L+ I +
Sbjct: 612 LDLIED 617


>gi|110612669|gb|ABG78297.1| GyrB [uncultured bacterium]
          Length = 410

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 232/411 (56%), Positives = 314/411 (76%), Gaps = 1/411 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF++ SYKVSGGLHGVG+SVVNALS  L L IKREG  +E  +  G    P+  TG+  
Sbjct: 1   GKFDENSYKVSGGLHGVGISVVNALSKKLTLSIKREGQRWEQEYATGDPVAPIAPTGNC- 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT + F P  ++F   +F++  LQ+R +EL+FLN +++I+L D+R    RE T  Y+
Sbjct: 60  RGTGTTIIFWPDPEVFESTEFSFSRLQNRFKELAFLNDNLKITLKDEREGRKREATYHYE 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+ AFV+ +++ ++ +  + IR++G RD I +D A++WNDGY E+V  FTNNIPQ DG 
Sbjct: 120 GGVAAFVADINKGREAIHPTIIRVRGERDGIVVDAAIQWNDGYAESVYPFTNNIPQADGD 179

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G RSA+TR +++Y+++   + K+K +    D REG  ++LS+K+PDP+FSSQTK+K
Sbjct: 180 THLTGFRSAMTRAMSAYLDREGIAAKNKITADSSDMREGLAAILSVKVPDPKFSSQTKDK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR VVE  + + L+ +L+EHP EA+ I  K+++A+  R+AAR+AR+ TRRK  +D
Sbjct: 240 LVSSEVRPVVEGIIAEALTTFLDEHPKEAQAIAAKIVEAARAREAARKARETTRRKSAMD 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD
Sbjct: 300 IANLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFD 359

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           ++L S+EIGT+ITALGTGIG D F+  KLRYH+II+MTDADVDG+HIRTLL
Sbjct: 360 RILESEEIGTMITALGTGIGPDEFNAAKLRYHRIILMTDADVDGSHIRTLL 410


>gi|148971413|gb|ABR20244.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/425 (48%), Positives = 281/425 (66%), Gaps = 5/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ +YKVSGGLHGVGVS VNALS  L + + + G+ Y +SF  G + 
Sbjct: 1   EVIMTVLHAGGKFDKDTYKVSGGLHGVGVSCVNALSKALDVNVCKGGHEYTISFARGKVV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT V+F+P   IFSV  + Y T+ +RLREL+FLN  ++I   D+R+ 
Sbjct: 61  APLKKLGESK-KRGTTVSFIPVEQIFSVTTYYYQTIYNRLRELAFLNKGLEIIFTDERNT 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHEN 272
           +  E     +GGI +FV +L+  K PL   P   QGSR       S ++AM+WN+ Y E 
Sbjct: 120 DHAEAVFNAEGGIVSFVQFLNGTKTPLFPRPHLYQGSRPLHDGTLSFEVAMQWNETYTET 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  + NNI  + GGTHL G  +ALTR + SY++     +  K  + GD  R G  +++S 
Sbjct: 180 VFSYVNNIATRQGGTHLPGFSTALTRVLNSYIKNHHLYQNAKTPITGDFVRPGMAAIISA 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+P P+F  QTK+KL   +V S  +  V +  + + +EHP  AKIIV K   A+  R+AA
Sbjct: 240 KVPTPQFKGQTKQKLGPGDVGSAAQQIVGEEFATYPQEHPSIAKIIVDKAALAAQAREAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+ T+RK VLD A LPGK  DCSERDP K ++++VEGDSAGGSAK GR R  QAILP
Sbjct: 300 RKAREWTQRKSVLDRARLPGKSTDCSERDPAKCQIYIVEGDSAGGSAKGGRDRRFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RG I NVE++R  K+L + ++G++ +A G GIG+D F + KLRYH II++TDADVDG+H
Sbjct: 360 IRGTIPNVEKSRLQKVLQNTQVGSMFSAFGCGIGKDGFYLEKLRYHTIILLTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|148616460|gb|ABQ96973.1| GyrB [Nocardiopsis listeri]
          Length = 424

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/425 (48%), Positives = 284/425 (66%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVG SVVNALS+ L + I+ +G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGASVVNALSTALDVEIRTDGHVWRQHYEMTAPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             + V G    +TGT++TF     IF    ++++TL  RL+E++FLN  + I+L D+R  
Sbjct: 62  GDI-VKGEVTEETGTQLTFWADDSIFETTVYSFETLSRRLQEMAFLNKGLAITLRDERPE 120

Query: 217 EPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
              +     T  Y+ G+  FV Y++  K+P   S I  +   D IS+++AM+WN  Y  +
Sbjct: 121 FTDDGPVVQTYHYEQGLADFVDYINAKKEPAHASIISFEEDGDGISVEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y       ++ + ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTTEGGTHEEGFRSALTTLVNRYARDQRLLREKEDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAARARVAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC    P++ EL++VEGDSAGGSAK GR+  NQAILP
Sbjct: 301 RQARDLTRRKTLLETTSLPGKLSDCQSTKPEECELYIVEGDSAGGSAKGGRNPHNQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L +QE+  +ITALGTGI +D FD  KLRYHKI++MTDADVDG+H
Sbjct: 361 IRGKILNVEKSRIDRILKNQEVQAIITALGTGIHED-FDQEKLRYHKIVLMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|328349757|emb|CBY89186.1| GyrB protein [Flavobacterium sp. R-37608]
          Length = 426

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 199/427 (46%), Positives = 277/427 (64%), Gaps = 10/427 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
            DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS  +K  + R+G 
Sbjct: 1   VDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHMKSTVFRDGK 60

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
           IYE  +  G    P+   G   +  GT  TF P   IF+    F+++TL  R+RELS+LN
Sbjct: 61  IYEQEYERGKSIYPVKQIGET-DKRGTMQTFYPDDTIFTQTIEFSFETLSARMRELSYLN 119

Query: 204 SSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
             + I+  DKR         +       G++ ++ YLD +++P++   I +   +  I +
Sbjct: 120 KGITITFTDKRELDKDGNYVQEVFHSDEGLKEYIRYLDGNREPIISHVISMDNEKGEIPV 179

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + G
Sbjct: 180 EVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGLLDKLKFEISG 239

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ L  +LEE+P +AKIIV
Sbjct: 240 DDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPNDAKIIV 299

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +KV+ A+  R AA++AR++ +RK VL    LPGKL+DCSE+DP K E++LVEGDSAGG+A
Sbjct: 300 QKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTA 359

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKL 495
           KQGR R+ QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG           KL
Sbjct: 360 KQGRDRQFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTAEDSKALNLEKL 419

Query: 496 RYHKIII 502
           RYHK+II
Sbjct: 420 RYHKVII 426


>gi|307939312|gb|ADN95847.1| DNA gyrase B [Hymenobacter sp. VUG-A48]
          Length = 436

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 213/437 (48%), Positives = 296/437 (67%), Gaps = 21/437 (4%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ SYKVSGGLHGVGVS VNALS+ LK+ ++R G+ YE  +  G    P+ 
Sbjct: 1   TVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGFPQYPVK 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----P 216
             G   ++ GTEV FLP + IF+   + YD +  RLR+LS+LN  ++I+L D+R      
Sbjct: 61  EVGDT-DEHGTEVQFLPDASIFTETVYQYDKVAGRLRDLSYLNKGIRITLTDRRETVEGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
           E R    F  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV  
Sbjct: 120 EFRGEEFFSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVYS 179

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+ 
Sbjct: 180 YVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKVM 239

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+A
Sbjct: 240 EPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARKA 299

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAI+PLRG
Sbjct: 300 KDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAIMPLRG 359

Query: 456 KILNVERARFDKMLSSQEIGTLITALG---------------TGIGQDSFDINKLRYHKI 500
           KILNVE+A+  ++L ++EI  +ITALG               TG+     + +KLRYHK+
Sbjct: 360 KILNVEKAQEHRILENEEIRNMITALGVSFNERKSLAFTTDDTGVETGPLNFDKLRYHKV 419

Query: 501 IIMTDADVDGAHIRTLL 517
           IIMTDADVDG+HIRTLL
Sbjct: 420 IIMTDADVDGSHIRTLL 436


>gi|27544670|dbj|BAC55030.1| DNA gyrase B subunit [Legionella erythra]
          Length = 299

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/299 (56%), Positives = 218/299 (72%), Gaps = 3/299 (1%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DT   +GLHHM++EV+DN+IDE+L GY   I VT++ D S TV D+GRGIP D+HKEEG 
Sbjct: 1   DTVDGTGLHHMVFEVVDNSIDEALAGYCKEIFVTIHADESITVKDDGRGIPVDIHKEEGR 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G ++E  + NG
Sbjct: 61  SAAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTIRRNGKVHEQHYRNG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           + D PL +TG A N TGT+V F PS++ F+  +F+YD L  RLRELSFLNS V I L D+
Sbjct: 121 VPDAPLAITGDA-NATGTQVWFKPSANTFNNIEFHYDILAKRLRELSFLNSGVCIHLFDE 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +  + T  Y+GGI+AFV +L+R+K P+M     +   +DNI++DL+M+WN+ + E  
Sbjct: 180 RTQK--QDTFRYEGGIQAFVEHLNRNKTPIMPVVFSLTAEKDNITVDLSMQWNNSFQETF 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
            CFTNNIPQ+DGGTHL+G R+ALTR + +Y+E    +KK K +  GDD REG  S LS 
Sbjct: 238 FCFTNNIPQRDGGTHLAGFRAALTRTLNTYIETEGYAKKAKVTTTGDDAREGPHSCLSC 296


>gi|328349715|emb|CBY89165.1| GyrB protein [Flavobacterium sp. R-40949]
          Length = 427

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 198/428 (46%), Positives = 281/428 (65%), Gaps = 11/428 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202
            +YE  +  G    P+ V G      GT VTF P   IF+   D++YDTL  R+RELS+L
Sbjct: 61  KVYEQEYEKGKALYPVKVIGETS-KRGTIVTFYPDPSIFTQTVDYSYDTLSARMRELSYL 119

Query: 203 NSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKREVDKDGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDSEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINK 494
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +      +I+K
Sbjct: 360 AKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALNISK 419

Query: 495 LRYHKIII 502
           LRYHK+II
Sbjct: 420 LRYHKVII 427


>gi|33187349|gb|AAP97537.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 400

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 203/406 (50%), Positives = 280/406 (68%), Gaps = 6/406 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V G 
Sbjct: 1   AGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGK 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +    +  
Sbjct: 61  SK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFH 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI   D
Sbjct: 118 FEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPD 175

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH +G R  LTR I++Y+E +  +++    + GDD REG  +++S+K+P+P+F  QTK
Sbjct: 176 GGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTK 235

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  
Sbjct: 236 GKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKES 295

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR
Sbjct: 296 LSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKAR 355

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMTDADVDG
Sbjct: 356 LDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDG 400


>gi|302340477|ref|YP_003805683.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637662|gb|ADK83089.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Spirochaeta smaragdinae DSM 11293]
          Length = 597

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/612 (27%), Positives = 280/612 (45%), Gaps = 50/612 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M+    ++SYD   I+ L  L+ ++ R  MYIG     S    G++ ++ E++DN+IDE 
Sbjct: 1   MAKK--STSYDESKIKTLSSLEHIRLRTGMYIGRLGDGSNFDDGIYILLKEIIDNSIDEY 58

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G  ++I V L  D    V D GRGIP      E +S        ++ G K+N + ++ 
Sbjct: 59  IMGSGNLIKVQL-ADNVVRVRDFGRGIPLGKV-IECVSI-------INTGAKYNDEVFQF 109

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTF 175
           S GL+GVG   VNALS   ++   R G  +E  F  G L +     G A     GT   F
Sbjct: 110 SVGLNGVGTKAVNALSKRFRVVSFRNGAYFEAIFERGELKS--QKKGKAPKEKNGTYTEF 167

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
               DIF    FN + ++ R+   + LN+ + +    KR           + G+   ++ 
Sbjct: 168 EADPDIFGDYLFNQEFVEQRMWNYACLNAGLTLEFNKKR--------FKSEKGLLDLLAS 219

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
               K          +G +    ++ A    + Y E    F N     DGGTH S  R  
Sbjct: 220 EIGEKTLY--EIGYYRGEK----LEFAFTHTETYGETYFSFVNGQYTSDGGTHQSAFREG 273

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L + +  + +K+           G D REG    +++K+ +P F SQTK KL ++EVR  
Sbjct: 274 LLKGVNEFYKKN---------YSGVDVREGIAGAIAVKLMNPVFESQTKNKLGNTEVRGW 324

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR---RKGVLDIASLPG 412
           + + V D ++ +L +    AK +  K+ +   +R      +   R   +K  L I  L  
Sbjct: 325 IVNEVKDAVADFLHKDQEAAKKLEDKIRNNERLRKELNSVKKEAREAAKKIALKIPKLKD 384

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
                 +++  ++ +FL EG SA G+    R   +QAI  LRGK  N    +   +  ++
Sbjct: 385 CKYHLGDKEGDETMIFLTEGASATGAMVSSRDVYHQAIFSLRGKPQNTWGKKKADLYKNE 444

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E+  ++ ALG        D+ +LRY KI+I TDAD DG HIR LLLTFF      L+H G
Sbjct: 445 ELYNMMMALGI-----ENDVAELRYAKIVIATDADHDGFHIRNLLLTFFLNYFEELVHQG 499

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            ++I++ P++ +   K  +Y  + +  ++ + + S + E+  F     +      +   +
Sbjct: 500 RVFILETPIFRVRNKKETRYCYNLKERDEAMGSLS-NHEVTRFKGLGEISPSEFGQFIGE 558

Query: 593 DALKIDKLIKDF 604
           D   ++  IK  
Sbjct: 559 DMRLVNVSIKSL 570


>gi|295979571|dbj|BAJ07458.1| DNA gyrase subunit B [Rhodobacter sp. MBIC 590]
          Length = 312

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/313 (57%), Positives = 220/313 (70%), Gaps = 8/313 (2%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DN IDE+L G+A  +TV ++ D S +V DNGRGIP D+H  EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNGIDEALAGHATAVTVKIHADSSVSVRDNGRGIPVDMHASEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+LRI R G  +   F NG
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGKEHFARFENG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTF-------LPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                L V   A  + GTEV F        P    FS  D+++ TL++RLREL+FLNS V
Sbjct: 121 ETVEHLRVVRDAPGEKGTEVRFLAAAKTNRPDGT-FSNLDYSFKTLENRLRELAFLNSGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+R  EP    +FY+GG+  FV YLDR K P+M  PI I G R  I +++AM WN
Sbjct: 180 RILLEDERPAEPLHSELFYEGGVREFVRYLDRSKSPVMPEPIFITGERGGIGVEIAMWWN 239

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D YHE VL FTNNIPQ+DGGTHL+G R ALTR IT Y + S  ++++K    GDD REG 
Sbjct: 240 DSYHETVLPFTNNIPQRDGGTHLAGFRGALTRTITKYAQDSGIARREKVDFTGDDAREGL 299

Query: 327 TSVLSIKMPDPRF 339
           T VLS+K+PDP+F
Sbjct: 300 TCVLSVKVPDPKF 312


>gi|148616474|gb|ABQ96980.1| GyrB [Nocardiopsis synnemataformans]
          Length = 420

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 205/422 (48%), Positives = 285/422 (67%), Gaps = 6/422 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L++ I+  G+++   +      
Sbjct: 1   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTALEVEIRLHGHVWRQRYEMTAPT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G + ++TGT++TF P   IF    F+++TL  R++E++FLN  + I++ D+R  
Sbjct: 61  GEL-VKGESTDETGTQITFWPDGGIFETTTFSFETLARRMQEMAFLNKGLSITIRDERPE 119

Query: 217 E----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y+ G+  +V +++  K+P   S I  +   + IS+++AM+WN  Y  +
Sbjct: 120 HTDGGPTVNTFHYEEGLSDYVRHINAKKEPAHASIISFEEDGEGISVEVAMQWNQSYTSS 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y       ++   ++ GDD REG T+++S+
Sbjct: 180 VHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQKLLREKDDNLTGDDIREGLTAIISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           KM DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK IV KV  A+  R AA
Sbjct: 240 KMADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKVSQAARARVAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR+  NQAILP
Sbjct: 300 RQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHNQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI +D FD  KLRYHK+I+MTDADVDG+H
Sbjct: 360 IRGKILNVEKSRIDRILKNTEVQAIITALGTGIHED-FDAEKLRYHKVILMTDADVDGSH 418

Query: 513 IR 514
           IR
Sbjct: 419 IR 420


>gi|148971443|gb|ABR20259.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 428

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 211/429 (49%), Positives = 290/429 (67%), Gaps = 9/429 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ +YKVSGGLHGVGVS VNALS+ L+  + R+G IY+  +  GI  
Sbjct: 1   EVIMTVLHAGGKFDKGTYKVSGGLHGVGVSCVNALSTHLQATVYRDGRIYQQEYAKGIPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G    + GT + F P   IF+   +NY T+  RL EL++LN  + I L+D R  
Sbjct: 61  YPVKEIGVTT-ERGTTIHFQPDISIFTTAIYNYSTIAARLSELAYLNVGLTIELVDFREK 119

Query: 217 EPREIT----MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +  +       + +GG+  FV+YLD  ++ L+  PI I G + ++ + +A+ +N G+ EN
Sbjct: 120 DANDKFLQQTFYSEGGLAEFVTYLDDTREKLIPHPIVIGGEKYDVPVQVALSYNTGFTEN 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V+ + NNI   +GGTH++G R ALTR + SY EKS   +K K  +IGDD REG T+V+S+
Sbjct: 180 VVSYVNNINTVEGGTHVAGFRRALTRTLKSYAEKSNLLEKAKVEIIGDDFREGLTAVISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL +++V   V+  V++ L ++LEEHP EAK IV KV+ A+  R AA
Sbjct: 240 KVAEPQFEGQTKTKLGNADVLGAVDICVSEVLESYLEEHPQEAKTIVSKVILAAQARQAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++ +RK VL    LPGKLADCS+ DP   ELFLVEGDSAGG+AKQGR R  QAILP
Sbjct: 300 RKAREMVQRKNVLTGGGLPGKLADCSDSDPAVCELFLVEGDSAGGTAKQGRDRRFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADV 508
           LRGKILNVE+A+  ++  ++++  +I ALG   G +         KLRY+K+IIMTDADV
Sbjct: 360 LRGKILNVEKAQEHRIYDNEQLRNMIMALGITFGTEEDAKAINLEKLRYYKVIIMTDADV 419

Query: 509 DGAHIRTLL 517
           DG+HIRTLL
Sbjct: 420 DGSHIRTLL 428


>gi|307939322|gb|ADN95852.1| DNA gyrase B [Hymenobacter sp. VUG-A141a]
          Length = 435

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 211/436 (48%), Positives = 294/436 (67%), Gaps = 17/436 (3%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGG F++ SYKVSGGLHGVGVS VNALS  LK+ ++R G++YE  +  G+   
Sbjct: 1   LIMTVLHAGGXFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGHLYEQEYKIGVPQY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           P+        + GT+V FLP   IF+   + Y+T+  RLRELS+LN  ++I+L D+R  +
Sbjct: 61  PVKQISDTE-EHGTQVEFLPDDSIFTESVYKYETIATRLRELSYLNKGIRITLTDRRDND 119

Query: 218 PR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
                     + +GG+  FV+YLD  +  LM +PI +   +    +++A+++ND Y E++
Sbjct: 120 VDGNFLYEEFYSEGGLSEFVAYLDAGRTVLMPNPIHVISEKGGTPVEVALQYNDSYQEHI 179

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             + NNI   +GGTH++G RSALTR + +Y +KS   +K K  + GDD REG T+V+S+K
Sbjct: 180 FSYVNNINTVEGGTHVAGFRSALTRTLKAYADKSGMLEKAKVEIQGDDFREGLTAVISVK 239

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL +S+V   V   V + L+ +LEE+P EA+IIV+KV+ A+  R AAR
Sbjct: 240 VQEPQFEGQTKTKLGNSDVSGAVNQAVGEILNQYLEENPKEARIIVEKVILAARARIAAR 299

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++ +RK VL   SLPGKLADCSE DPK  EL+LVEGDSAGG+AKQGR+R  QAILPL
Sbjct: 300 KAREMVQRKTVLGSNSLPGKLADCSESDPKICELYLVEGDSAGGTAKQGRNRAFQAILPL 359

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF------------DINKLRYHKII 501
           RGKILNVE+A+  ++  ++EI  +ITALG   G  +             ++NKLRYHK+I
Sbjct: 360 RGKILNVEKAQEHRIYENEEIKNMITALGVSFGTPADPENGIEADPKGLNMNKLRYHKVI 419

Query: 502 IMTDADVDGAHIRTLL 517
           IMTDA VDG+HIRT  
Sbjct: 420 IMTDAXVDGSHIRTSA 435


>gi|298230862|ref|ZP_06964543.1| DNA gyrase subunit B [Streptococcus pneumoniae str. Canada MDR_19F]
          Length = 539

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 213/504 (42%), Positives = 321/504 (63%), Gaps = 5/504 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F+P  
Sbjct: 13  LHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIPDP 71

Query: 180 DIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF     F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y++ 
Sbjct: 72  KIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYINE 131

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R++LTR
Sbjct: 132 NKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTSLTR 191

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +   
Sbjct: 192 VINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNR 251

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLADCS
Sbjct: 252 LFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCS 311

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
             +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L 
Sbjct: 312 SNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLF 371

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI +
Sbjct: 372 TAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 430

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PP+YG+  G  ++      + ++  + ++L         +K  I +      +DD    +
Sbjct: 431 PPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQLWE 488

Query: 599 KLIKDFYPNHDKTFIEQAVISGVF 622
             +   +    +  ++ A  +   
Sbjct: 489 TTMDPEHRLMARVSVDDAAEADKI 512



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 437 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 494

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 495 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 539


>gi|330466712|ref|YP_004404455.1| DNA topoisomerase [Verrucosispora maris AB-18-032]
 gi|328809683|gb|AEB43855.1| DNA topoisomerase [Verrucosispora maris AB-18-032]
          Length = 1169

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/475 (37%), Positives = 256/475 (53%), Gaps = 40/475 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     + Y AD +  L+GLDAV+KRP MYIG TD   G+ H++ E+LDN+ DE + G+
Sbjct: 1   MTAE-PETLYGADDLTHLEGLDAVRKRPGMYIGSTDS-RGVGHLVNEILDNSTDEGVAGH 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I VTL+ DGS  V D+GRGIPTD+H   GIS  E+++TRLHAGGKF    YK SGGL
Sbjct: 59  ATTIEVTLHADGSVQVDDDGRGIPTDVHARSGISGVELVLTRLHAGGKFGGSGYKTSGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--------LDNP------LVVTG--S 164
           HGVG S VNALS    + ++R G ++ MSF +G+         D P      L V G   
Sbjct: 119 HGVGASAVNALSRRFDVTVRRSGKVHTMSFRHGVPGIFDGDGPDAPFTPGPGLQVVGAMK 178

Query: 165 AGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            G  TGT + +      F      ++D ++ +LR  +FL   V  +L D  + EP +   
Sbjct: 179 RGQRTGTSIRYWYDPRYFETGATLDHDAVRAKLRHTAFLVPGVSYTLRDLTAEEPTKEQF 238

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------RDNISIDLAMRW 265
            Y  G+   V +L       +   + + G                   +    I++A RW
Sbjct: 239 HYPNGLTDMVEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEIEVAFRW 298

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK-SFGSKKDKRSVIGDDCRE 324
             GY   V CFTN I    GGTH  G   AL R +   V       K  + +   DD  E
Sbjct: 299 GTGYERTVECFTNTIRNAHGGTHRKGFERALARTLADAVRNTRGLLKAKEDAPTLDDVLE 358

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE--EHPLEAKIIVKKV 382
           G T+V+ +++P+P+F+SQTK++L ++ V  VV+  V   L +WL+  +   EA+ +++K+
Sbjct: 359 GMTAVVHVRVPEPQFTSQTKDELSTAGVTKVVQGLVEQHLKSWLDDRKTKTEARTVLQKI 418

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +DA+ VR   ++ +D  RRK  L+ A++P KL DC      +SELF+VEGDSA G
Sbjct: 419 VDAARVRLTQKQQKDAARRKTALEGAAMPAKLVDCRATGVDRSELFIVEGDSALG 473



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 9/131 (6%)

Query: 681  SIFSFGSKYKR--IFSNRIEENYLTILSLICNGDK-IKITGPCSL-----LDTIFSIGRK 732
             + +  ++Y R  I + R+      +  +   G     I           +  +   G++
Sbjct: 1035 LLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPETIFTYTQAEMEATVRKLEQAGKQ 1094

Query: 733  GIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
             ++ + R+KGLGEM+A +LWETT+NP TRS+ R+ + D   A+ +   LMG++VEPRR +
Sbjct: 1095 IVTPIPRFKGLGEMDADELWETTMNPATRSVRRITLEDVDAAERILELLMGEKVEPRRNW 1154

Query: 792  IQENSLPSALD 802
            + +++     D
Sbjct: 1155 LIDSADRVDRD 1165



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 2/210 (0%)

Query: 438  SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
            SA+  R+ E QA+LP+RGKILNV++A   ++L + E   ++  LG G G+  FD++ +RY
Sbjct: 958  SARVARTAEYQALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRT-FDLSAMRY 1016

Query: 498  HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-TRGKSLQYVKDE 556
             +++IM DADVDGAHIRTLL+T F R M  LI  G LY   PPL+ I T+G++ + +   
Sbjct: 1017 GRVLIMADADVDGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPETIFTY 1076

Query: 557  ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
               E     + L +  +               +  +                    ++ A
Sbjct: 1077 TQAEMEATVRKLEQAGKQIVTPIPRFKGLGEMDADELWETTMNPATRSVRRITLEDVDAA 1136

Query: 617  VISGVFNCESDQEINVSLASKLANRLNFIA 646
                        E   +     A+R++  A
Sbjct: 1137 ERILELLMGEKVEPRRNWLIDSADRVDRDA 1166


>gi|148971383|gb|ABR20229.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 199/423 (47%), Positives = 283/423 (66%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++G+ +  ++  G+  
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLVLDIDQKGSHFRQTYHKGVPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL VTG +   TGT + F P   I     F++D L HR REL +LN S+   L  +   
Sbjct: 61  APLAVTGPSE-TTGTSIRFYPDLSIMETDAFSFDVLAHRFRELGYLNPSLT--LSLREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+ +++ +K+ L +     +   +  + ++A ++ D    E +L 
Sbjct: 118 TLREEVFHDEGGIRSFLIFVNENKRTLHEPLSFRKSFDNGSTFEVAFQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GGTH+ G R+ALTR +  Y+++   +K ++  V G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGTHVRGFRAALTRVVNRYIKEKNLNKGEE--VKGEDIREGLSALISIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+ + L    E+    A+ I  K + ++  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVSGAMETFLAEFLEDAFEKQGAIARSIADKAILSAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPSKCELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+ +  ++ ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKTKGVEEFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|213647471|ref|ZP_03377524.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 326

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/326 (34%), Positives = 173/326 (53%), Gaps = 8/326 (2%)

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 1   GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 60

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L             +S   L   + +     K+I    
Sbjct: 61  KGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRME 120

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           D++      + L   LN   +     K +   +   N
Sbjct: 121 RRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQN 180

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   +     +       ++         +     +  +T 
Sbjct: 181 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTS 240

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+
Sbjct: 241 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 300

Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803
            LMGD VEPRR FI+EN+L  + +DI
Sbjct: 301 TLMGDAVEPRRAFIEENALKAANIDI 326


>gi|307939342|gb|ADN95862.1| DNA gyrase B [Hymenobacter chitinivorans]
          Length = 432

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/434 (47%), Positives = 291/434 (67%), Gaps = 17/434 (3%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGGKF++ SYK SGGLHGVGVS VNALS+   + +KR+G+IYE  +  G+   
Sbjct: 1   LIMTVLHAGGKFDKNSYKTSGGLHGVGVSCVNALSTHTHVTVKRDGHIYEQEYTIGVPQY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS- 215
            +   G    + GT+V F P   IF     ++Y+ +  RLREL++LN  ++I L D R+ 
Sbjct: 61  DVRQIGDTT-ERGTQVWFQPDPSIFDETLIYSYERIATRLRELAYLNRGIRIVLTDLRTP 119

Query: 216 ---PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               E +    F +GG+  +V YLD ++  LM  P+ +   R  I +++A ++ND Y E+
Sbjct: 120 ADGGEEQRDEFFSEGGVAEYVQYLDANRTVLMTRPVYVSTER-GIPVEVAFQYNDSYQEH 178

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  + NNI   +GGTH++G RSA+TR + +Y EKS    K K  + GDD REG T+V+S+
Sbjct: 179 IFSYVNNINTHEGGTHVAGFRSAITRVLKAYAEKSGEVAKAKIEIQGDDFREGLTAVISV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL +SEV   V   V + L+ +LEE+P EA++IV+KV+ A+  R AA
Sbjct: 239 KVQEPKFEGQTKGKLGNSEVSGAVNQVVGEILNQYLEENPKEARVIVEKVILAAKARVAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           ++AR++ +RK VL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILP
Sbjct: 299 KKAREMVQRKTVLGSNSLPGKLADCSESDPELCELYLVEGDSAGGTAKQGRNRAFQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----------NKLRYHKIII 502
           LRGKILNVE+A+  ++  ++EI  +ITALG    + + +           +KLRYHK+II
Sbjct: 359 LRGKILNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSSTRSLNLDKLRYHKVII 418

Query: 503 MTDADVDGAHIRTL 516
           MTDADVDG+HIRTL
Sbjct: 419 MTDADVDGSHIRTL 432


>gi|307939320|gb|ADN95851.1| DNA gyrase B [Hymenobacter sp. VUG-A60a]
          Length = 434

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/433 (48%), Positives = 291/433 (67%), Gaps = 17/433 (3%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGG F++ SYKVSGGLHGVGVS VNALS  LK+ ++R G++YE  +  G+   P+
Sbjct: 3   MTVLHAGGXFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGHLYEQEYKIGVPQYPV 62

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
              G    + GT+V FLP   IF+   + Y+T+  RLRELS+LN  ++I+L D+R  +  
Sbjct: 63  KEIGDTE-EHGTQVEFLPDDTIFTESVYKYETIATRLRELSYLNKGIRITLTDRRDNDVD 121

Query: 220 ----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
                   + +GG+  FV YLD  +  LM  PI +   +    +++A+++ND Y E++  
Sbjct: 122 GNFLYEEFYSEGGLSEFVGYLDAGRTVLMPKPIHVISEKGGTPVEVALQYNDSYQEHIFS 181

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH++G RSALTR + +Y +KS   +K K  + GDD REG T+V+S+K+ 
Sbjct: 182 YVNNINTIEGGTHVAGFRSALTRTLKAYADKSGMLEKAKVEIQGDDFREGLTAVISVKVQ 241

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +S+V   V   V + L+ +LEE+P EA+IIV+KV+ A+  R AAR+A
Sbjct: 242 EPQFEGQTKTKLGNSDVSGAVNQAVGEILNQYLEENPKEARIIVEKVILAARARIAARKA 301

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++ +RK VL   SLPGKLADCSE DPK  EL+LVEGDSAGG+AKQGR+R  QAILPLRG
Sbjct: 302 REMVQRKTVLGSNSLPGKLADCSESDPKICELYLVEGDSAGGTAKQGRNRAFQAILPLRG 361

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSF------------DINKLRYHKIIIM 503
           KILNVE+A+  ++  ++EI  +ITALG   G  +             ++ KLRYHK+IIM
Sbjct: 362 KILNVEKAQEHRIYENEEIKNMITALGVSFGTPADLENGIEADPKGLNMTKLRYHKVIIM 421

Query: 504 TDADVDGAHIRTL 516
           TDA VDG+HIRTL
Sbjct: 422 TDAXVDGSHIRTL 434


>gi|269799122|gb|ACZ43839.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 370

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 206/372 (55%), Positives = 273/372 (73%), Gaps = 4/372 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+   + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVS
Sbjct: 1   AGHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F P
Sbjct: 61  GGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWP 119

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+
Sbjct: 120 SHETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLN 178

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R AL
Sbjct: 179 VNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGAL 238

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 239 TRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 298

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 299 VEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLA 358

Query: 416 DCSERDPKKSEL 427
           DC E+DP  SEL
Sbjct: 359 DCQEKDPALSEL 370


>gi|29348442|ref|NP_811945.1| DNA topoisomerase IV subunit B [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569193|ref|ZP_04846603.1| DNA topoisomerase IV subunit B [Bacteroides sp. 1_1_6]
 gi|298385854|ref|ZP_06995411.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
 gi|29340346|gb|AAO78139.1| DNA topoisomerase IV subunit B [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841212|gb|EES69293.1| DNA topoisomerase IV subunit B [Bacteroides sp. 1_1_6]
 gi|298261082|gb|EFI03949.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
          Length = 625

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 182/663 (27%), Positives = 287/663 (43%), Gaps = 74/663 (11%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLE 58
           DN     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 10  DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I +T+  +   +V D GRGIP            E + + L+ GGK++ K++K S 
Sbjct: 70  QAGKKIEITVEENLRVSVRDYGRGIPQGK-------LVEAV-SVLNTGGKYDSKAFKKSV 121

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  ++R  R+G +   +F  G L     VT     D GT + F P 
Sbjct: 122 GLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLQTD--VTQDTEEDNGTFIFFEPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I     R           + G+   ++    
Sbjct: 180 NTLFVNYCFKPEFIETMLRNYTYLNTGLAIIYNGHRI--------LSRNGLVDLLNDNMT 231

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   + ++G      I++A      Y E    F N      GGTH S  +  + R
Sbjct: 232 A--TGLYPIVHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 285

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV--- 355
            I  +  K+             D R G  + +++ + +P F SQTK KL S+ +      
Sbjct: 286 TIKEFFNKNMDYT---------DIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMTPGGVT 336

Query: 356 VESFVNDG------------------LSAWLEEHPLEAKIIVKKVLDAS-MVRDAARRAR 396
           V  +V D                   +   ++E   E K I      A    + A    R
Sbjct: 337 VNKYVGDFIKLEVDNFLHKNADVAEVMQQKIQESEKERKAIAGVTKLARERAKKANLHNR 396

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            L   +  L+     G   D        S +F+ EGDSA GS  + R    QA+  LRGK
Sbjct: 397 KLRDCRIHLNDPKGKGMEED--------SCIFITEGDSASGSITKSRDVNTQAVFSLRGK 448

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
            LN        +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR L
Sbjct: 449 PLNSFGLTKKVVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLL 503

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           L+TFF +  P LI  G +YI++ PL+ +   K   Y   E+   + +   S + EI  F 
Sbjct: 504 LITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTVYCYSEDERVNAINELSPNPEITRF- 562

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              G IS ++ ++FI   ++++++      +  K  +E  +       ++    N+ +  
Sbjct: 563 KGLGEISPDEFKHFIGKDMRLEQVTLR-KTDAVKELLEFYMGKNTMERQNFIIDNLVIEE 621

Query: 637 KLA 639
            LA
Sbjct: 622 DLA 624


>gi|307939318|gb|ADN95850.1| DNA gyrase B [Hymenobacter roseosalivarius]
          Length = 434

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 211/433 (48%), Positives = 291/433 (67%), Gaps = 17/433 (3%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF++ SYKVSGGLHGVGVS VNALS  LK+ ++R G++YE  +  G+   P+
Sbjct: 3   MTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGHLYEQEYKIGVPQYPV 62

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
              G    + GT+V FLP   IF+   + Y+T+  RLRELS+LN  ++I+L D+R  +  
Sbjct: 63  KQIGDTE-EHGTQVEFLPDDSIFTELVYKYETIATRLRELSYLNKGIRITLTDRRDNDVD 121

Query: 220 ----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
                   + +GG+  FV YLD  +  LM  PI +   +    +++A+++ND Y E++  
Sbjct: 122 GNFLYEEFYSEGGLSEFVGYLDAGRTVLMPKPIHVISEKGGTPVEVALQYNDSYQEHIFS 181

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH++G RSALTR + +Y +KS   +K K  + GDD REG T+V+S+K+ 
Sbjct: 182 YVNNINTIEGGTHVAGFRSALTRTLKAYADKSGMLEKAKVEIQGDDFREGLTAVISVKVQ 241

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +S+V   V   V + L+ +LEE+P EA+IIV+KV+ A+  R AAR+A
Sbjct: 242 EPQFEGQTKTKLGNSDVSGAVNQAVGEILNQYLEENPKEARIIVEKVILAARARIAARKA 301

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++ +RK VL   SLPGKLADCSE DPK  EL+LVEGDSAGG+AKQGR+R  QAILPLRG
Sbjct: 302 REMVQRKTVLGSNSLPGKLADCSESDPKICELYLVEGDSAGGTAKQGRNRAFQAILPLRG 361

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSF------------DINKLRYHKIIIM 503
           KILNVE+A+  ++  ++EI  +ITALG   G  +             ++ KLRYHK+IIM
Sbjct: 362 KILNVEKAQEHRIYENEEIKNMITALGVSFGTPADPENGVEADPKGLNMTKLRYHKVIIM 421

Query: 504 TDADVDGAHIRTL 516
           T A VDG+HIRTL
Sbjct: 422 TXAXVDGSHIRTL 434


>gi|332800593|emb|CBY89786.1| GyrB protein [Flavobacterium hibernum]
          Length = 425

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 199/426 (46%), Positives = 276/426 (64%), Gaps = 10/426 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
            DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS  +K  + REG 
Sbjct: 1   VDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSVHMKSTVFREGK 60

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
           IYE  +  G    P+   G   +  GT  TF P + IF+    F+YDTL  R+RELSFLN
Sbjct: 61  IYEQEYERGKAIYPVKQIGET-DKRGTRQTFYPDNTIFTQTTEFSYDTLSARMRELSFLN 119

Query: 204 SSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
             + I+  DKR      E +        G++ ++ YLD +++P++   I +   +  I +
Sbjct: 120 KGITITFTDKREVDEKGEFKSEVFHSTEGLKEYIRYLDGNREPIVSHVISMDNDKGEIPV 179

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A+ +N  Y EN+  + NNI   +GGTHL G RS LTR +  Y + S    K K  + G
Sbjct: 180 EVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLKFEIAG 239

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +A+II+
Sbjct: 240 DDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPNDARIII 299

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP + E++LVEGDSAGG+A
Sbjct: 300 QKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGGTA 359

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKL 495
           KQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G           KL
Sbjct: 360 KQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTAEDSKALNLEKL 419

Query: 496 RYHKII 501
           RYHK+I
Sbjct: 420 RYHKVI 425


>gi|2196792|gb|AAB80813.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 418

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/422 (58%), Positives = 319/422 (75%), Gaps = 5/422 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L +  KF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLCSLRKFDHNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV  L+R+K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVESLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+    ++IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENHRC-ELIVGKIVDAARAREAARKA 296

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+NQAILPL+G
Sbjct: 297 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKNQAILPLKG 356

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML SQE+ TLITALG GIG+D ++ +K RYHKIII+TDA VDG+HI T
Sbjct: 357 KILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYHKIIIITDAVVDGSHILT 416

Query: 516 LL 517
           LL
Sbjct: 417 LL 418


>gi|110612677|gb|ABG78301.1| GyrB [uncultured bacterium]
          Length = 410

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 238/411 (57%), Positives = 310/411 (75%), Gaps = 1/411 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F++ SYKVSGGLHGVGVSVVNALS+ L L I+REG ++E  +  G    P+   G A 
Sbjct: 1   GEFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPVAPIAAKGPAK 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F P  ++F   +F++  L+ R REL++LN  + I L D+R    RE    Y+
Sbjct: 61  -GTGTTVHFWPDPEVFESTEFSFARLEKRFRELAYLNDGLTILLNDERGDRKREGVYHYE 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+ AFV  +++ ++ +  + IRI+G RD + +D A++WNDGY+E+V  FTNNIPQ DGG
Sbjct: 120 GGVAAFVLDINKSREAVHPTVIRIKGDRDGVMVDTAIQWNDGYNESVFPFTNNIPQADGG 179

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G RS +TR +  Y+E+   + K K ++   D REG T+VLS+K+PDP+FSSQTK+K
Sbjct: 180 THLTGFRSVMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPDPKFSSQTKDK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR +VES + +G+  +L+E P EA+ I  K+++A+  R+AAR+ARD+TRRKG LD
Sbjct: 240 LVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKARDITRRKGALD 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD
Sbjct: 300 IANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFD 359

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           +ML S EIGTLITALGTGIGQD F+  KLRYH+IIIMTDADVD +HIRTLL
Sbjct: 360 RMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDDSHIRTLL 410


>gi|328349739|emb|CBY89177.1| GyrB protein [Flavobacterium sp. R-38423]
 gi|328349747|emb|CBY89181.1| GyrB protein [Flavobacterium sp. R-40835]
 gi|328349751|emb|CBY89183.1| GyrB protein [Flavobacterium sp. R-37599]
 gi|328349767|emb|CBY89191.1| GyrB protein [Flavobacterium sp. R-36964]
          Length = 427

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/428 (45%), Positives = 279/428 (65%), Gaps = 11/428 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            +YE  +  G    P+   G      GT VTF P   IF+    ++YDTL  R+RELSFL
Sbjct: 61  KVYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFL 119

Query: 203 NSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKREVDKEGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINK 494
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +      +I+K
Sbjct: 360 AKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTEEDSKALNISK 419

Query: 495 LRYHKIII 502
           LRYHK+II
Sbjct: 420 LRYHKVII 427


>gi|260062971|ref|YP_003196051.1| DNA topoisomerase IV subunit B [Robiginitalea biformata HTCC2501]
 gi|88784539|gb|EAR15709.1| DNA topoisomerase IV subunit B [Robiginitalea biformata HTCC2501]
          Length = 619

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/653 (27%), Positives = 286/653 (43%), Gaps = 54/653 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +  S Y  ++I+ L   + ++ RP MYIG     S    G++ ++ EV+DN IDE + G 
Sbjct: 1   MAQSQYTEENIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVIDNCIDEFVMGA 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +T+  D   TV D GRGIP            EV+ ++++ GGK++ +++K + GL
Sbjct: 61  GKTIEITIRED-KVTVRDYGRGIPLGK-------VVEVV-SKMNTGGKYDTRAFKKAVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALS++ ++   R+G      F  G L N            GT+VTF P   
Sbjct: 112 NGVGTKAVNALSTYFRVESNRDGKSKAAEFETGDLKNE-EFLEETSRKRGTKVTFTPDET 170

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +  + ++  LR   +LN  + I    ++           + G++  +   +   
Sbjct: 171 IFKKYKYRSEYVERMLRNYVYLNPGLTIVFNGEK--------FHSENGLKDLLQDNNSAD 222

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L    I ++G    +++         Y E    F N      GGTH S  R AL + +
Sbjct: 223 DLLYP-IIHLKGEDIEVALT---HSKTQYSEEYHSFVNGQHTTQGGTHQSAFREALVKTL 278

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------R 353
             +  K+             D R+   S +SIK+ +P F SQTK KL S+++       R
Sbjct: 279 RDFYGKN---------YDPSDVRKSVISAISIKVMEPVFESQTKTKLGSTDMGGNLPTVR 329

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIASL 410
           + +  FV   L  +L ++P  A++I +K+  A   R      R       +K  L    L
Sbjct: 330 TYINDFVGRELDNYLHKNPQTAELIQRKIQQAERERKELSGIRKLARERAKKASLHNKKL 389

Query: 411 PGKLADCSERDPKK---SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                        +   + LF+ EGDSA GS  + R    QA+  LRGK LN        
Sbjct: 390 RDCRVHLDNMKNDRRLETTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGMSKKI 449

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR LL+TFF +  P 
Sbjct: 450 VYENEEFNLLQAALNI-----EESLEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFPE 504

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LYI++ PL+ +   K   Y   EE   + +       EI  F    G IS ++ 
Sbjct: 505 IIKEGHLYILQTPLFRVRNKKETIYCYSEEEKREAVKKLKGKPEITRF-KGLGEISPDEF 563

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
           ++FI + ++++ ++ D   + ++        +     E   E        +  
Sbjct: 564 QHFIGEDIRLEPVMLDKAMSIEELLKFYMGKNTPDRQEFIIENLKVEVDLVEE 616


>gi|148470232|gb|ABQ66063.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 199/423 (47%), Positives = 278/423 (65%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVV+ALS  L+L I +EG ++  ++  G+  
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVSALSQTLELEIHQEGKLHRQAYHQGVPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G+     GT + F P   I     F +DTL HR REL+FLN  + I  + +   
Sbjct: 61  APLAVVGTTT-LRGTSIRFWPDLSIMETDTFLFDTLAHRFRELAFLNPILTI--VLREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE-NVLC 275
             RE T  ++GGI+++  +L+ +KK + +     +        ++A ++ +      +L 
Sbjct: 118 SLREETFHFEGGIKSYNEFLNENKKTIHEVLFFRRELPTGAQFEVAFQYQETTDNETILG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  K+GGTH+ G R+ALTR I  +++    +K ++    G+D REG T+V S+++P
Sbjct: 178 FANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELR--GEDIREGLTAVASVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL SS V   +E+F+ + +    EE P  AK I  K +  +M R+AAR+A
Sbjct: 236 DPQFEGQTKAKLGSSWVAGAMETFLAEEMQERFEEFPQIAKKIADKGIQTAMAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++L +RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 296 KELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAILPLKG 355

Query: 456 KILNVERARF-DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+A + ++ ++  E+  LITA+G G+G + +    LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKAGWAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|269799098|gb|ACZ43827.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799100|gb|ACZ43828.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 372

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 210/374 (56%), Positives = 277/374 (74%), Gaps = 4/374 (1%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSG
Sbjct: 1   GHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS
Sbjct: 61  GLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ 
Sbjct: 120 HETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNV 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPINKDAFHFSAEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 239 RTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 298

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLAD
Sbjct: 299 EQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLAD 358

Query: 417 CSERDPKKSELFLV 430
           C E+DP  SEL++V
Sbjct: 359 CQEKDPALSELYIV 372


>gi|110612711|gb|ABG78318.1| GyrB [uncultured bacterium]
          Length = 414

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 229/416 (55%), Positives = 295/416 (70%), Gaps = 7/416 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  +YKVSGGLHGVGVS VNALS    + I R+G  +E  +  G    PL  TG   
Sbjct: 1   GKFDSSTYKVSGGLHGVGVSCVNALSQEFSVEIWRDGLTWEQDYSCGDPTTPLRQTG-TS 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREI 221
              GT V FLP   IF+V ++NYDTL  RLRE++FLN  + I+L D+R     + EPR  
Sbjct: 60  RRRGTRVHFLPDKSIFAVTEYNYDTLAQRLREMAFLNKGLSITLTDERNIDPKTGEPRRG 119

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y GGI  F+ +L+R K  L   PI ++ SRD + ID+A+++NDGY E +  F NNI 
Sbjct: 120 EFRYAGGISEFIRHLNRGKSVLHGKPIAMEASRDGVEIDIALQYNDGYSETLFSFANNIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTHLSG RSALTR I +  +     K  K ++ GDD REG  +V+S+K+P P+F  
Sbjct: 180 TVDGGTHLSGFRSALTRTINAVGQSLGLFKDVKENLSGDDVREGLVAVVSVKLPQPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL +S++   V++FVN+ L A+LE++P  AK I+ K +DA+  R+AAR+ARDLTRR
Sbjct: 240 QTKGKL-NSDIAGTVQAFVNERLGAFLEQNPPIAKRIINKAIDAARAREAARKARDLTRR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG LD   LPGKLADCSER+P++ EL+LVEG+SAGG+AKQGR R  QAILPL+GKILNVE
Sbjct: 299 KGALDGGGLPGKLADCSERNPERCELYLVEGESAGGTAKQGRDRRFQAILPLKGKILNVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           +AR+DKML  +EI  +ITALG GIG+D FD +KLRYHK+I++TDADVDG+HIRTLL
Sbjct: 359 KARYDKMLGHEEIRAMITALGCGIGKDDFDPSKLRYHKLILITDADVDGSHIRTLL 414


>gi|9971301|dbj|BAB12468.1| DNA gyrase B subunit [Marinospirillum megaterium]
          Length = 404

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 240/404 (59%), Positives = 299/404 (74%), Gaps = 4/404 (0%)

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
            EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I RE  +YE  + +GI 
Sbjct: 3   LEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELTLTIWREKQVYEQVYKHGIS 62

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             PL   G     TGT V F PS   F+  +F ++TL  RLRELSFLNS V+ISL D+R+
Sbjct: 63  QAPLTAVG-TTEKTGTLVRFRPSPQTFNNIEFVFETLAKRLRELSFLNSGVKISLRDERN 121

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVL 274
              RE    Y+GG++AFV +L+ +K  L +      Q   D +++++AM+WNDGY EN+ 
Sbjct: 122 G--REEVFHYEGGLKAFVDHLNTNKTTLGKVFYFSHQREDDGVNVEVAMQWNDGYSENIY 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           C+TNNIPQ+DGG HL+G RS LTR +  Y+E+   +KK K S  GDD REG T+++S+K+
Sbjct: 180 CYTNNIPQRDGGAHLAGFRSGLTRVLNQYIEQEGLAKKAKVSTTGDDAREGLTAIVSVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEVR+ VE  +    + +L E P EAK IV K+LDA+  R+AAR+
Sbjct: 240 PDPKFSSQTKDKLVSSEVRTAVEQEMGKTFTDYLLEFPQEAKAIVGKMLDAARAREAARK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKG LDIA LPGKLADC E+DP  SE++LVEGDSAGGSAKQGR R  QAILPL+
Sbjct: 300 AREMTRRKGALDIAGLPGKLADCQEKDPSLSEIYLVEGDSAGGSAKQGRDRRTQAILPLK 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           GKI NVE+ARFDKMLSS E+GTLITALG GIG++ F+ +KLRYH
Sbjct: 360 GKIFNVEKARFDKMLSSAEVGTLITALGCGIGREEFNADKLRYH 403


>gi|27544666|dbj|BAC55028.1| DNA gyrase B subunit [Legionella quinlivanii]
          Length = 299

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 173/302 (57%), Positives = 222/302 (73%), Gaps = 3/302 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  +GLHHM++EV+DN+IDE+L G+   I V ++ D S TV D+GRGIP  +HKEEG 
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDEALAGHCKEIHVRIHADESITVKDDGRGIPVVIHKEEGR 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G ++E  + NG
Sbjct: 61  SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLIRRHGKVHEQHYRNG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           + D PL  TG A   TGT+V F PS++ FS  +F+YD L  RLRELSFLNS V I L D+
Sbjct: 121 VPDAPLTATGEAS-STGTQVWFKPSANTFSNIEFHYDILAKRLRELSFLNSGVCIHLFDE 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +  + T  Y+GGI+AFV +L+R+K P+M     + G +DNI I+LAM+WND + E +
Sbjct: 180 RTQK--QDTFRYEGGIKAFVEHLNRNKTPIMPIVFSLTGEKDNIQIELAMQWNDSFQETI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL+G R+ALTR + +Y+E    +KK K +  GDD REG T+VLS+K
Sbjct: 238 FCFTNNIPQRDGGTHLAGFRAALTRTLNNYIENEGFAKKAKITTTGDDAREGLTAVLSVK 297

Query: 334 MP 335
           +P
Sbjct: 298 VP 299


>gi|15530005|gb|AAL01490.1| gyrase B [Shewanella sp. CL256/73]
          Length = 399

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 237/402 (58%), Positives = 313/402 (77%), Gaps = 4/402 (0%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E  + +G+ D P+ V G A  
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDAT- 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGTE+ F PS + FS  +F+++ L  R+RELSFLNS V I L+D+R  +       Y+G
Sbjct: 60  KTGTEIRFWPSEETFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GI AFV YL+R+K P+ +        R++ I++++AM+WNDGY E++ CFTNNIPQ+DGG
Sbjct: 118 GISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQESIFCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 LGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           KMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADV
Sbjct: 358 KMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADV 399


>gi|269799118|gb|ACZ43837.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 370

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 206/372 (55%), Positives = 274/372 (73%), Gaps = 4/372 (1%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSG
Sbjct: 1   GHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F PS
Sbjct: 61  GLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ 
Sbjct: 120 HETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNV 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 239 RTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 298

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 299 EQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 358

Query: 417 CSERDPKKSELF 428
           C E+DP  SEL+
Sbjct: 359 CQEKDPALSELY 370


>gi|295979443|dbj|BAJ07394.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
 gi|295979447|dbj|BAJ07396.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
          Length = 304

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/306 (59%), Positives = 229/306 (74%), Gaps = 2/306 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN DGS TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNADGSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LR+ R+G  + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSRLLLRVWRDGKEHFIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G AG   GTEVTF  S++ F+  ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 EAVAPLAVVGDAGGKRGTEVTFYASAETFTNVEYDFATLEHRLRELAFLNSGVNILLSDL 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y+GG+  FV YLDR+KK ++  PI I    + I+++ A+ WND YHENV
Sbjct: 181 RHGIEKREEMRYEGGVVEFVKYLDRNKKAIVPMPITILAEMNGITVECALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y +    +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAD--VIAKKEKITLTGDDCREGLTAVLSVK 298

Query: 334 MPDPRF 339
           +PDP+F
Sbjct: 299 VPDPKF 304


>gi|309806042|ref|ZP_07700065.1| putative DNA topoisomerase IV subunit B [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167561|gb|EFO69717.1| putative DNA topoisomerase IV subunit B [Lactobacillus iners
           LactinV 03V1-b]
          Length = 343

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/349 (43%), Positives = 217/349 (62%), Gaps = 9/349 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   N++YD  SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ GY
Sbjct: 1   MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D GRG+PT +H   G+   EVI+T LHAGGKF +K+Y+ SGGL
Sbjct: 58  GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WLK+R+ R+G  +E  F++ G     L   G+  + TGT +TF P S
Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   + Y+T+Q RLRE +FL   V+ +L D+R P+ ++   +  G            
Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNE 234

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            K  +      +G  DNI ++ + ++NDGY ENV+ F NN+   DGG+H +G RS  TR 
Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEK 346
              Y +K    K   + + G D REG ++VLS+K+P+    F  QTK  
Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGN 343


>gi|269799088|gb|ACZ43822.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 371

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/373 (56%), Positives = 275/373 (73%), Gaps = 4/373 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVS
Sbjct: 1   AGHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F P
Sbjct: 61  GGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWP 119

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+
Sbjct: 120 SHETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLN 178

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R AL
Sbjct: 179 VNKTPINKDAFHFSAEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGAL 238

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 239 TRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 298

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLA
Sbjct: 299 VEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLA 358

Query: 416 DCSERDPKKSELF 428
           DC E+DP  SEL+
Sbjct: 359 DCQEKDPALSELY 371


>gi|148470292|gb|ABQ66093.1| gyrase b [uncultured bacterium]
          Length = 415

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 198/420 (47%), Positives = 274/420 (65%), Gaps = 7/420 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L+L I +EG ++   +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSRRLELEIYQEGRLHRQVYHQGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G+     GT + F P   I     F +DTL HR REL+FLN  + I  + +   
Sbjct: 61  APLSVVGTTA-LRGTSIRFWPDLSIMETDTFLFDTLAHRFRELAFLNPILTI--VLREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE-NVLC 275
             RE T  ++GGI+++  +L+ +KK + +     +        ++A ++ +      +L 
Sbjct: 118 SLREETFHFEGGIKSYNEFLNENKKTIHEVLFFRRELPSGAQFEVAFQYQETTDNETILG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  K+GGTH+ G R+ALTR I  +++    +K ++    G+D REG T+V+S+++P
Sbjct: 178 FANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELR--GEDIREGLTAVVSVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL SS V   +E+F+ + +    EE P  AK I  K +  +M R+AAR+A
Sbjct: 236 DPQFEGQTKAKLGSSWVSGAMETFLAEEMQERFEEFPQIAKKIADKAIQTAMAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++L +RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 296 KELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAILPLKG 355

Query: 456 KILNVERA-RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+A   ++ ++  E+  LITA+G G+G   +    LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKAGGAERFVTHDEVRALITAVGCGLGNKEYSQKNLRYHKIIIMTDADVDGSHIR 415


>gi|190148818|gb|ACE63384.1| DNA gyrase B subunit [Thermobifida fusca]
          Length = 415

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 204/417 (48%), Positives = 280/417 (67%), Gaps = 6/417 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L++ ++R+G ++  S+      
Sbjct: 1   EVIMTVLHAGGKFDSKSYAVSGGLHGVGVSVVNALSTQLEVEVRRDGYLWTQSYEMTKPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L +     ++TGT++TF P   IF    FN++TL  RL+E++FLN  + I++ D+R  
Sbjct: 61  TEL-IRREPTDETGTQITFWPDGSIFETTTFNFETLSRRLQEMAFLNKGLSITIRDERPE 119

Query: 217 ----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T +Y+GG+  FV +L+  K+P+  S I  + + D I++++AM+WN  Y  +
Sbjct: 120 FVGDSPVTQTYYYEGGLSDFVRHLNATKEPVHSSIIAFEEAGDGIAVEIAMQWNQSYTSS 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       +     + GDD REG T+++S+
Sbjct: 180 VHTFANTINTAEGGTHEEGFRAALTSIVNRYARDQKLLRDKDEDLTGDDIREGLTAIVSV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   ++ L  WL+ +P EAK IV K   A+  R AA
Sbjct: 240 KLADPQFEGQTKTKLGNTEAKSFVQKVCHEYLRDWLDRNPGEAKDIVTKATQAARARIAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LTRRK +L+  SLPGKLADC   DP++ E+++VEGDSAGGSAK GR    QAILP
Sbjct: 300 RQARELTRRKTLLESTSLPGKLADCQSTDPERCEVYIVEGDSAGGSAKGGRDPYYQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           +RGKILNVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKII+MTDADVD
Sbjct: 360 IRGKILNVEKARIDRILKNNEVQAIITALGTGI-HDDFDITKLRYHKIILMTDADVD 415


>gi|295979445|dbj|BAJ07395.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
          Length = 305

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/306 (59%), Positives = 229/306 (74%), Gaps = 2/306 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN DGS TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNADGSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LR+ R+G  + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSRLLLRVWRDGKEHFIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G AG   GTEVTF  S++ F+  ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 EAVAPLAVVGDAGGKRGTEVTFYASAETFTNVEYDFATLEHRLRELAFLNSGVNILLSDL 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y+GG+  FV YLDR+KK ++  PI I    + I+++ A+ WND YHENV
Sbjct: 181 RHGIEKREEMRYEGGVVEFVKYLDRNKKAIVPMPITILAEMNGITVECALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y +    +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAD--VIAKKEKITLTGDDCREGLTAVLSVK 298

Query: 334 MPDPRF 339
           +PDP+F
Sbjct: 299 VPDPKF 304


>gi|148616450|gb|ABQ96968.1| GyrB [Nocardiopsis exhalans]
          Length = 424

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 198/425 (46%), Positives = 284/425 (66%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVG+SVVNALS+ L + I+++G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGISVVNALSTALDVEIRQQGHVWRQHYEMTAPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L + G   ++TGT++TF     IF    F+++TL  R++E++FLN  + I++ D+R  
Sbjct: 62  GEL-IKGEETDETGTQITFWADGSIFETTTFSFETLARRMQEMAFLNKGLSITIRDERPD 120

Query: 217 EPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
              +     T  Y+ G+  +V +++  K+P   S I  +   + I++++AM+WN  Y  +
Sbjct: 121 HIDDAPVVNTFHYEEGLSDYVRHINAKKEPAHASIISFEEEGEGIAVEVAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y       +  + ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQKLLRDKEDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P E K IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEGKDIVSKASQAARARVAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  S PGKL+DC   +P++ E+++VEGDSAGGSAK GR+  NQAILP
Sbjct: 301 RQARDLTRRKTLLETTSPPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHNQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI ++ FD  KLRYHK+I+MTDADVDG+H
Sbjct: 361 IRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEE-FDAEKLRYHKVILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|2196854|gb|AAB80844.1| DNA gyrase beta-subunit [Citrobacter sp. MAM-1]
          Length = 419

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 247/422 (58%), Positives = 321/422 (76%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHA  KF   S +VSGG  GV VSVVNALS  L+L I+REG +++ ++++G+  
Sbjct: 1   EVIMTVLHALEKFEANSNEVSGGRPGVRVSVVNALSQKLELVIRREGKVHQQTYVHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG     TGT+V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGETE-ATGTQVRFWPSHETFTNVVEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG D ++ +K+R   +++MTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGGDVYNPDKVRGQSVVMMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|90185706|emb|CAJ84447.1| gyrase B protein [Vibrio splendidus]
          Length = 398

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 243/400 (60%), Positives = 309/400 (77%), Gaps = 3/400 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y
Sbjct: 61  -DKTGTEIRFWPSEETFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+D
Sbjct: 119 EGGIQAFVEHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG HL+G R ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK
Sbjct: 179 GGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 299 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           FDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 398


>gi|119369982|gb|ABL68005.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 202/423 (47%), Positives = 280/423 (66%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L+L I +EG ++   +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSRRLELEIYQEGRLHRQVYHQGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G+     GT + F P   I     F +DTL HR REL+FLN  + I  + +   
Sbjct: 61  APLSVVGTTA-LRGTSIRFWPDLSIMETDTFLFDTLAHRFRELAFLNPILTI--VLREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GGI+++  +L+ +KK + +     +        ++A ++ +   +E +L 
Sbjct: 118 SLREETFHFEGGIKSYNEFLNENKKTIHEVLFFRRELPSGAQFEVAFQYQETTDNETILG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  K+GGTH+ G R+ALTR I  +++    +K ++    G+D REG T+V+S+++P
Sbjct: 178 FANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELR--GEDIREGLTAVVSVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL SS V   +E+F+ + +    EE P  AK I  K +  +M R+AAR+A
Sbjct: 236 DPQFEGQTKAKLGSSWVSGAMETFLAEEMQERFEEFPQIAKKIADKAIQTAMAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++L +RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 296 KELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRGRKFQAILPLKG 355

Query: 456 KILNVERA-RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+A   ++ ++  E+  LITA+G G+G + +    LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|267850654|gb|ACY82402.1| DNA gyrase subunit B [Paenibacillus sp. YC64]
          Length = 401

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 218/405 (53%), Positives = 295/405 (72%), Gaps = 5/405 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF  + YKVSGGLHGVGVSVVNALS  + +++KREG+IY+  +  G     + + G
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSELVIVQVKREGHIYQQEYRKGAPQYDIKIIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
               +TGT+VTF P S+IF+    ++Y+TLQ R+REL+FLN  ++I L D+R+       
Sbjct: 61  DTT-ETGTQVTFTPDSEIFTETTVYDYETLQSRIRELAFLNKGIEIVLSDERTGVSNS-- 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI  FV YL+R+++ L + PI ++G++D+I +++A+++ND Y EN+  F NNI  
Sbjct: 118 FKYEGGIIEFVKYLNRNREALHEQPIYVEGAKDHIHVEVALQYNDSYTENIYSFANNINT 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH SG +SALTR I  Y  K+   K +  +  GDD REG T+++S+K+P+P+F  Q
Sbjct: 178 HEGGTHESGFKSALTRIINDYARKTNLIKDNDSNFSGDDVREGLTAIISVKIPEPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEVR +VESF  + L  +LEE+P  ++ IV+K L A+  R+AAR+AR+LTRRK
Sbjct: 238 TKTKLGNSEVRGIVESFFAEKLQEFLEENPSVSRKIVEKGLQAARAREAARKARELTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L++ SLPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+
Sbjct: 298 SALEVGSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           AR D++L + EI  +ITALGTGI  D FD++K RYHKIIIMTDAD
Sbjct: 358 ARLDRILGNAEIRAIITALGTGI-SDEFDLSKARYHKIIIMTDAD 401


>gi|23978276|dbj|BAC21123.1| DNA gyrase B subunit [Pleurocapsa sp. PCC 7327]
          Length = 391

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/390 (48%), Positives = 261/390 (66%), Gaps = 2/390 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I V +N DGS TV+DNGRGIPTD H   G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHIEVDINSDGSVTVTDNGRGIPTDTHPTTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVG+SVVNALS W+K+ + R+  ++   +  GI  
Sbjct: 62  ETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVKVTVWRDNKVHTQRYERGIPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L +       TGT +TFLP   IF+   +F+Y TL  RL+EL++LN+ V+I+  DKR 
Sbjct: 122 TELEIKPEKEERTGTSITFLPDLQIFTGGIEFDYSTLAGRLKELAYLNAGVKITFSDKRG 181

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVL 274
            EP   T  Y+GGI+ +V+Y+ R K+PL Q  I + G ++ I +++AM+W  D Y +N+L
Sbjct: 182 SEPHVETYCYEGGIKEYVAYMCREKQPLHQDIIYVSGEKNGIQLEVAMQWCVDAYSDNLL 241

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F NNI   DGGTHL GL++ LTR + S   K    K ++ ++ G++ REG T V+S+K+
Sbjct: 242 GFANNIRTIDGGTHLEGLKTVLTRTLNSVARKRNKIKDNEPNLAGENVREGLTGVISVKV 301

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P F  QTK KL ++EVR +V+S   + L+ +LE HP  A  I++K + A    +AARR
Sbjct: 302 PEPEFEGQTKTKLGNTEVRGIVDSIAGEALNEYLEFHPQVADAIIEKAVQAFKAAEAARR 361

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           AR+L RRK VL+ + LPGKLADCS RDP +
Sbjct: 362 ARELVRRKSVLESSPLPGKLADCSSRDPSE 391


>gi|2196798|gb|AAB80816.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/422 (58%), Positives = 318/422 (75%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L A G +   SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLVALGNYEAHSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F P  D FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPFEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K+++A+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLVENPADAKLIVGKIVEAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML SQE+ TLITALG GIG+D ++ +K RY  I IMTDA VDG+HI T
Sbjct: 358 KILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYQNIFIMTDALVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|2196852|gb|AAB80843.1| DNA gyrase beta-subunit [Citrobacter sp. JYME-1]
          Length = 419

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 246/422 (58%), Positives = 320/422 (75%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHA  KF   S  VSGG  GV VSVVNALS  L+L I+REG +++ ++++G+  
Sbjct: 1   EVIMTVLHALEKFEANSNDVSGGRPGVRVSVVNALSQKLELVIRREGKVHQQTYVHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL VTG     TGT+V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR 
Sbjct: 61  APLAVTGETE-ATGTQVRFWPSHETFTNVVEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ C
Sbjct: 120 GKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRA
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQPMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLAGLPGKLADCQERDPAHSELYLVEGDSAGGFAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GIG D ++ +K+R   +++MTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGGDVYNPDKVRGQSVVMMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|94537348|gb|ABF29776.1| DNA gyrase B [Bacillus cereus biovar anthracis str. CI]
          Length = 405

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/408 (50%), Positives = 292/408 (71%), Gaps = 4/408 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
             YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L + G   + TGT
Sbjct: 1   GGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKIIGDT-DQTGT 59

Query: 172 EVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
              F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+
Sbjct: 60  ITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIK 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           ++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH  
Sbjct: 119 SYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEV 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +S
Sbjct: 179 GFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++SL
Sbjct: 239 EARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS
Sbjct: 299 PGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           + E+ T+ITA+GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLL
Sbjct: 359 NDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLL 405


>gi|198042712|gb|ACH81181.1| GyrB [Vibrio sp. UST010723-010]
          Length = 392

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 233/394 (59%), Positives = 304/394 (77%), Gaps = 3/394 (0%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL
Sbjct: 1   MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYHHGEPQAPL 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G   + TGT + F PS   F+  +F+YD L  RLRELSFLNS V I L D+R  E +
Sbjct: 61  AVVGDT-DKTGTMIRFWPSDQTFTNVEFHYDILAKRLRELSFLNSGVSIKLADER-EEDK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTN 278
                Y+GGI+AFV++L+ +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTN
Sbjct: 119 HDHFMYEGGIQAFVNHLNTNKTPIHEKVFHFNSEREDGISVEVAMQWNDGFQENIYCFTN 178

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+
Sbjct: 179 NIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPK 238

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEV+S VES + + LS +L EHP EAK++  K++DA+  R+AAR+AR++
Sbjct: 239 FSSQTKDKLVSSEVKSAVESTMGEKLSEFLAEHPSEAKMVCSKIIDAARAREAARKAREM 298

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKIL
Sbjct: 299 TRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 358

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           NVE+ARFDKMLSSQE+ TLITALG GIG+D ++ 
Sbjct: 359 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 392


>gi|332800581|emb|CBY89780.1| GyrB protein [Flavobacterium degerlachei]
          Length = 427

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/428 (45%), Positives = 279/428 (65%), Gaps = 11/428 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            +YE  +  G    P+   G      GT VTF P   IF+    F+YDTL  R+RELS+L
Sbjct: 61  KVYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPSIFTQTIEFSYDTLSARMRELSYL 119

Query: 203 NSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR      +          G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKRELDKDGKFVSEVFHSDEGLKEYIRYLDGNREPIIAHVISMDNDKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINK 494
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +      +I+K
Sbjct: 360 AKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTEEDSKALNISK 419

Query: 495 LRYHKIII 502
           LRYHK+II
Sbjct: 420 LRYHKVII 427


>gi|110612663|gb|ABG78294.1| GyrB [uncultured bacterium]
          Length = 393

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 251/396 (63%), Positives = 312/396 (78%), Gaps = 3/396 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L L IKR G +YE  + +G+ D PL VTG A N 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEELHLLIKRHGKVYEQHYHHGVPDAPLAVTGEA-NA 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT+V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R+ +    T  Y+GG
Sbjct: 60  TGTQVWFKPSAQTFTNIEFHYDILAKRLRELSFLNSGVGILLFDERTNKQ--DTFRYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+R+K P++ S   + G +DNIS++LA++WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEHLNRNKAPIIPSVFSMSGEKDNISVELALQWNDSYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+GLRSALTR + +Y+E    +KK K +  GDD REG T+VLS+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGLRSALTRTLNNYIENEGHAKKAKVTTTGDDAREGLTAVLSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+SVVES V + L+ +L E+P  AK IV K+++A+  R+AARRARD+TRRK  LDIA
Sbjct: 238 SSEVKSVVESLVAEKLNDYLLENPTVAKTIVGKIIEAARAREAARRARDMTRRKSALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG D +D +K+RYH+IIIMT
Sbjct: 358 LSSQEVATLITALGCGIGSDEYDPDKIRYHRIIIMT 393


>gi|317133917|ref|YP_004089828.1| DNA gyrase subunit B domain protein [Ruminococcus albus 7]
 gi|315450379|gb|ADU23942.1| DNA gyrase subunit B domain protein [Ruminococcus albus 7]
          Length = 660

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/607 (28%), Positives = 288/607 (47%), Gaps = 30/607 (4%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SYD +SI  LKG D V+KRP +  G  +G  G  H  +E+L N+IDE+ +GY   IT  
Sbjct: 3   ASYDNNSISSLKGADRVRKRPGVIFGS-NGLEGAQHAYFEILSNSIDEAKDGYGSKITTI 61

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGVGV 125
           L  DGS +V D+GRGIP + +K E     E++   L+AGGK+  +  +Y+ S GL+G+G 
Sbjct: 62  LYEDGSISVQDHGRGIPLEFNKTENRYNWELVYCELYAGGKYDVDGANYEYSLGLNGLGA 121

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
                 S +  + + R+G  Y + F  G      +     + ++TGT   + P  ++F+ 
Sbjct: 122 CATQYASEYFDVEVVRDGYKYNLHFEKGENIGGLVKKKLKSKSETGTFQKWKPDLEVFTD 181

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +  Y+ L    ++ + +N  +   ++D+ S    E     + GI  ++  +   K    
Sbjct: 182 TNITYEYLLDVNKKQAMVNKGITFCIMDQSSDTNTEYYY--ENGIIDYIEEISDGKNISS 239

Query: 245 QSPIRIQG--------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
              I   G            +  ++A  +N+     +  + N+   + GG     ++SA 
Sbjct: 240 PYYIEGSGTGRDREDLKEYKVKAEIAFAFNND-VPTLQYYHNSSFLEHGGAPDKAVKSAF 298

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
                  +++     K +  +   D  +    +++       + +QTK+ + +  ++  +
Sbjct: 299 VAVFDKILKQRGKYNKGETKISFADIEDSLIVIVNSLSTMTSYENQTKKAINNKFIQDFL 358

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKL 414
              + + L  W  E+  ++  ++ ++L     R+A+ + R   +RK V    S     K 
Sbjct: 359 TELIKERLEIWFIENAGDSNRVIDQILANKRSREASEKQRIALKRKLVGKSDSWDRVKKF 418

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DC  +D    ELF+VEGDSA GS K GR  E QA++P+RGKILN  ++   K++SS  I
Sbjct: 419 VDCKSKDTSIRELFIVEGDSALGSVKMGRDSEFQAVMPVRGKILNCLKSDISKIVSSDII 478

Query: 475 GTLITALGTGI---------GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             LI  LG GI         G  SFDIN L+++KIII TDADVDG  IRTL+LT  +R  
Sbjct: 479 MDLIKVLGCGIEIPIKTPKRGVLSFDINNLKWNKIIICTDADVDGFQIRTLILTMIYRLC 538

Query: 526 PSLIHNGFLYIIKPP----LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           P+LI  G++YI + P     Y     +   +  DE+     +  +  S          G 
Sbjct: 539 PTLIEEGYVYIAETPLYEMRYKTRANEETFFAFDEKEKNKIMKGKDPSRFFIQRSKGLGE 598

Query: 582 ISKNDLR 588
            +   + 
Sbjct: 599 NTAEFMW 605



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QR KGLGE  A  +W TT++P TR L+RV   DA +  + F   +G+ V  R+ +I+EN
Sbjct: 590 IQRSKGLGENTAEFMWLTTMDPKTRRLIRVTSEDAKKMLEYFELYLGNNVAARKSYIEEN 649


>gi|256820909|ref|YP_003142188.1| DNA topoisomerase IV subunit B [Capnocytophaga ochracea DSM 7271]
 gi|256582492|gb|ACU93627.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Capnocytophaga ochracea DSM 7271]
          Length = 616

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/618 (28%), Positives = 292/618 (47%), Gaps = 58/618 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++   YD DSI+ L   + ++ RP MYIG     S    G++ ++ EV+DN IDE + G 
Sbjct: 1   MEEIRYDEDSIRSLDWQEHIRTRPGMYIGKLGDGSSADDGIYILLKEVIDNCIDEFVMGA 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V +  D    V D GRGIP            +V+ ++++ GGK++ +++K S GL
Sbjct: 61  GKTIDVKI-TDNQVEVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKKSIGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALS++ K+   R+G      F  G+L         +    GT V F+P   
Sbjct: 112 NGVGTKAVNALSTYFKVESVRDGQCKSAIFERGLLKEE-SAIEESQKRRGTSVAFIPDDT 170

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + +   L+   +LN  + I+   ++         + + G++  ++  + ++
Sbjct: 171 IFKNFKFRNEYVVRMLKNYVYLNPGLTINYNGEK--------YYSENGLKDLLTE-NNNE 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +  +   I ++G    I+I         Y E    F N      GGTHL+  + A  + I
Sbjct: 222 EDFLYPIIHLRGEDIEIAIS---HSKTQYSEEYYSFVNGQNTTQGGTHLNAFKEAYVKTI 278

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------R 353
             + +K++ +          D R+   + LSIK+ +P F SQTK KL S+E+       R
Sbjct: 279 RDFYKKNYDAS---------DVRKSIIAGLSIKVMEPVFESQTKTKLGSTEMGEGMPSVR 329

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGVL 405
           + +  F++  L  +L ++P  +  + +K++ A   R+        A  RA+  +     L
Sbjct: 330 TYINDFISRHLDDFLHKNPEISDALQRKIMQAQREREDLAGIRKLAKERAKKASLHNRKL 389

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               +   L D  +    +S LF+ EGDSA GS  + R    QA+  LRGK LN      
Sbjct: 390 RDCRV--HLTDTKDERALQSTLFITEGDSASGSITKSRDVTTQAVFSLRGKPLNTYGMSK 447

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL          ++ LRY+ I++ TDADVDG HIR LL+TFF +  
Sbjct: 448 KIVYENEEFNLLQAALNI-----EDSMDDLRYNNIVVATDADVDGMHIRLLLITFFLQFF 502

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P +I  G LYI++ PL+ +       Y   EE  E  +       EI  F    G IS +
Sbjct: 503 PEIIKEGHLYILQTPLFRVRNKTQKIYCYSEEEKEAAIDKLKGKPEITRF-KGLGEISPD 561

Query: 586 DLRNFIDDALKIDKLIKD 603
           + ++FI + +++D ++ D
Sbjct: 562 EFKDFIGEDIRLDPVMMD 579



 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 34/144 (23%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSI 729
              +L  +    F  +  +     +      +  +     KI           +D +   
Sbjct: 489 HIRLLLITFFLQFFPEIIKE--GHLYILQTPLFRVRNKTQKIYCYSEEEKEAAIDKL--- 543

Query: 730 GRKG-ISMQRYKGLGEMNASQ----------LWETTLNPDTRSLLRVKITDASQADDLFS 778
             KG   + R+KGLGE++  +          L     +P       V +      + L  
Sbjct: 544 --KGKPEITRFKGLGEISPDEFKDFIGEDIRL-----DP-------VMMDKTIHTEQLLE 589

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
             MG     R+EFI  N L   +D
Sbjct: 590 FYMGKNTPDRQEFIINN-LKVEID 612


>gi|148616466|gb|ABQ96976.1| GyrB [Nocardiopsis prasina]
          Length = 425

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 202/422 (47%), Positives = 286/422 (67%), Gaps = 6/422 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVG+SVVNALS+ L + I+++G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGISVVNALSTALDVEIRQQGHVWRQHYEMTAPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G A +DTGT++TF   +DIF    F+++TL  R++E++FLN  + I++ D+R  
Sbjct: 62  GDL-VKGEATDDTGTQITFWADADIFETTTFSFETLARRMQEMAFLNKGLSITIRDERPD 120

Query: 217 EPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
              +     T  Y+ G+  +V +++  K+P   S I  +   + I++++AM+WN  Y  +
Sbjct: 121 HTDDGPVVNTFHYEEGLSDYVRHINAKKEPAHASIISFEEDGEGIAVEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y       +  + ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQKLLRDKEDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAARARVAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR+  NQAILP
Sbjct: 301 RQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHNQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI ++ FD  KLRYHKII+MTDADVDG+H
Sbjct: 361 IRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEE-FDAEKLRYHKIILMTDADVDGSH 419

Query: 513 IR 514
           IR
Sbjct: 420 IR 421


>gi|255030521|ref|ZP_05302472.1| DNA topoisomerase IV subunit B [Listeria monocytogenes LO28]
          Length = 317

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/323 (44%), Positives = 202/323 (62%), Gaps = 8/323 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G S  EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHEDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNY+TL  RLRE +FL   + I LID+R          ++ G++ FV Y++  K  
Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREG 325
           Y  +    K+  +++ G D REG
Sbjct: 295 YARRVNLLKEKDKNLEGSDIREG 317


>gi|281356734|ref|ZP_06243225.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Victivallis vadensis ATCC BAA-548]
 gi|281316861|gb|EFB00884.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Victivallis vadensis ATCC BAA-548]
          Length = 609

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 176/624 (28%), Positives = 294/624 (47%), Gaps = 52/624 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M +   + +YD  +I+ L  L+ ++ RP MYIG     S    G++ +I E++DN+IDE 
Sbjct: 1   MPEE-NSVAYDGSAIKTLSALEHIRLRPGMYIGRMGDGSHPDDGIYILIKEIIDNSIDEF 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G+   + +++      T+ D GRGIP D          E + + ++ GGK+N   +K 
Sbjct: 60  IMGHGKRVELSI-EGNEVTIRDYGRGIPLDK-------VVECV-SVMNTGGKYNDDVFKF 110

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS +  +R  R+G  +E +F  G+L       G  G   GT V F+
Sbjct: 111 SIGLNGVGTKAVNALSEFFLVRAVRDGRFHEATFERGVLTGENE--GECGEKNGTFVRFI 168

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   +F    F  + ++ RL   ++LNS + +    +R             G++  +   
Sbjct: 169 PDPTLFPNYAFKLEYIEKRLWMYAYLNSGLALYFNGQR--------YLSANGLQDLLESE 220

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                   +  +    +  + +I+ A+  +D Y E    F N     DGGTHLS  +  +
Sbjct: 221 TG------EERLYNVIAYRSKTIEFALTHSDNYGETSFSFVNGQYTNDGGTHLSAFKEGV 274

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + I  +  K+            D+ R+G    ++IK+ DP F SQTK KL +++VR  +
Sbjct: 275 LKGINEFSGKN---------YKADEIRDGMIGAVAIKIKDPVFESQTKNKLGNTDVRGPI 325

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIASLPGK 413
            + V D +  +L ++   ++I++ KV     +    +  +     T++K  L I  L   
Sbjct: 326 VAAVRDAIVDYLHKNKDVSEILLDKVARNEQMHRQIQEVKKKGRETQQKTRLRIPKLKDC 385

Query: 414 LAD-----CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
                       +   + +FL EGDSA GS +  R   +QAI  LRGK +N    +FDK+
Sbjct: 386 KFHIGDKWPRNLEKSDTMIFLTEGDSAAGSLEVCRDVNSQAIFALRGKPMNCYGEKFDKI 445

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
            S++E+  L+ ALG        DI  LRY K++I TDADVDG HIR LL+T+F      L
Sbjct: 446 YSNEELTFLMQALGI-----EDDIENLRYDKVVIATDADVDGLHIRNLLITYFLCFFEQL 500

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           + +G LY+++ PL+ + + K        ++  D    +   +         G IS  +  
Sbjct: 501 VLSGHLYVLETPLFRVQKPKEKPVYCYSDAERDAAAAKLGKKAEITRFKGLGEISPKEFG 560

Query: 589 NFIDDALKIDKLIKDFYPNHDKTF 612
            FI + +K+  +  +   N  +  
Sbjct: 561 QFIGEDIKLQPVTLENMRNVPELL 584


>gi|190148824|gb|ACE63387.1| DNA gyrase B subunit [Streptomonospora alba]
          Length = 423

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 203/425 (47%), Positives = 284/425 (66%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGV+VVNALSS L++ I R+GN++  S+      
Sbjct: 1   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVTVVNALSSRLEIEICRDGNVWRQSYSTARPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G   ++TGT+  F     IF    ++++TL  R++E++FLN  + I++  +R  
Sbjct: 61  APLER-GEETSETGTQTVFWADDTIFESTTYSFETLARRMQEMAFLNKGLSITIRGERPE 119

Query: 217 ----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y+ GI  FV++++  K+P   S I  +   + IS +++M+WN  +  +
Sbjct: 120 FVGDTPLVHTYHYENGISDFVAHINTTKEPAHASIIGFEEEGEGISTEISMQWNQSFTSS 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y  +    ++   ++ GDD REG T+++S+
Sbjct: 180 VHTFANTINTAEGGTHEEGFRTALTSVVNRYAREQKLLREKDDNLTGDDIREGLTAIISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   ++ L  W E +P EAK +V K   A+  R AA
Sbjct: 240 KLADPQFEGQTKTKLGNTEAKSFVQRVTHEHLRDWFERNPGEAKDVVTKASQAARARIAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLT+RK +L+  SLPGKL+DC   +P+KSE+++VEGDSAGGSAK GR    QAILP
Sbjct: 300 RQARDLTQRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPHYQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI  D FD +KLRYHKII+MTDADVDG+H
Sbjct: 360 IRGKILNVEKSRIDRILKNNEVQAIITALGTGI-HDDFDASKLRYHKIILMTDADVDGSH 418

Query: 513 IRTLL 517
           IRTLL
Sbjct: 419 IRTLL 423


>gi|269799120|gb|ACZ43838.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 369

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 206/371 (55%), Positives = 273/371 (73%), Gaps = 4/371 (1%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSG
Sbjct: 1   GHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G   + TGTE+ F PS
Sbjct: 61  GLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ 
Sbjct: 120 HETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNV 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 239 RTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 298

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 299 EQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 358

Query: 417 CSERDPKKSEL 427
           C E+DP  SEL
Sbjct: 359 CQEKDPALSEL 369


>gi|148616438|gb|ABQ96962.1| GyrB [Nocardiopsis aegyptia]
          Length = 424

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 204/425 (48%), Positives = 285/425 (67%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L + I+++G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTALDVEIRKDGHVWRQHYEMTAPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G A ++TGT++TF     IF    + ++TL  R++E++FLN  + I++ D+R  
Sbjct: 62  GEL-VKGEATDETGTQITFWADGSIFETTVYTFETLARRMQEMAFLNKGLSITIRDERPE 120

Query: 217 E----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y  G+  +V +++  K+P   S I  +   D IS ++AM+WN  Y  +
Sbjct: 121 HTDGGPTVNTFHYDEGLADYVRHINTKKEPAHASIISFEEDGDGISAEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G  SALT  +  Y       ++ + ++ GDD REG T+++SI
Sbjct: 181 VHTFANTINTAEGGTHEEGFHSALTTLVNRYARDQKLLREREENLTGDDIREGLTAIISI 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAARARVAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRR+ +L+  SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR+  NQAILP
Sbjct: 301 RQARDLTRRRTLLESTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHNQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI ++ FD +KLRYHK+I+MTDADVDG+H
Sbjct: 361 IRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEE-FDADKLRYHKVILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|119369964|gb|ABL67996.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 204/423 (48%), Positives = 289/423 (68%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++G  +   +  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL VTG + + TGT + F P   I     F+YD L HR RELSFLN S+ I+L ++ + 
Sbjct: 61  SPLAVTG-SSDRTGTAIRFYPDLTIMETGQFSYDVLAHRFRELSFLNPSLTITLAEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+S+++ +K+ L +     +   +  + +++ ++ D    E +L 
Sbjct: 119 -LRESVFHDEGGIRSFLSFVNENKRVLHEPLFFWKVLENGATFEISFQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GG+H+ G RSALT+ +  ++     +K ++  V G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEE--VKGEDIREGLSAIVSIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+++ L    E+    A+ I  K + ++  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+ +  +K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKTKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|119369910|gb|ABL67969.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 204/423 (48%), Positives = 289/423 (68%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++G  +   +  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL VTG + + TGT + F P   I     F+YD L HR RELSFLN S+ I+L ++ + 
Sbjct: 61  SPLAVTG-SSDRTGTAIRFYPDLTIMETDQFSYDVLAHRFRELSFLNPSLTITLAEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+S+++ +K+ L +     +   +  + +++ ++ D    E +L 
Sbjct: 119 -LRESVFHDEGGIRSFLSFVNENKRVLHEPLFFWKVLENGATFEISFQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GG+H+ G RSALT+ +  ++     +K ++  V G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEE--VKGEDIREGLSAIVSIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+++ L    E+    A+ I  K + ++  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+ +  +K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKTKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|298479894|ref|ZP_06998093.1| DNA gyrase, B subunit [Bacteroides sp. D22]
 gi|299144912|ref|ZP_07037980.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
 gi|295085680|emb|CBK67203.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Bacteroides xylanisolvens XB1A]
 gi|298273703|gb|EFI15265.1| DNA gyrase, B subunit [Bacteroides sp. D22]
 gi|298515403|gb|EFI39284.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
          Length = 625

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/655 (27%), Positives = 292/655 (44%), Gaps = 58/655 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLE 58
           DN     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 10  DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I +T+  +   +V D GRGIP        I A  +    L+ GGK++ K++K S 
Sbjct: 70  QAGKKIEITVEENLRVSVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFKKSV 121

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  ++R  R+G +   +F  G L      T +   + GT + F P 
Sbjct: 122 GLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTD--ETKNTEEENGTYIFFEPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I     R           + G+   ++    
Sbjct: 180 NTLFLNYCFKPEFIETMLRNYTYLNTGLAIIYNGHRI--------LSRNGLVDLLNDNMT 231

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   I ++G      I++A      Y E    F N      GGTH S  +  + R
Sbjct: 232 A--TGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 285

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------ 352
            I  +  K+             D R G  + +++ + +P F SQTK KL S+ +      
Sbjct: 286 TIKEFFNKNMDYT---------DIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMVPGGVT 336

Query: 353 -RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTRRKGVLDIASL 410
               V  F+   +  +L ++   A+ I +K+ ++   R A     +    R    ++ + 
Sbjct: 337 VNKYVGDFIKQEVDNFLHKNADIAEAIQQKIQESEKERKAIAGVTKLARERAKKANLHNR 396

Query: 411 PGKLADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +       DP      + S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 KLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 456

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 457 KKVVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLLITFFLQF 511

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   EE   + +     + EI  F    G IS 
Sbjct: 512 FPDLIKKGHVYILQTPLFRVRNKKKTNYCYSEEERINAINELGPNPEITRF-KGLGEISP 570

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 571 DEFKHFIGKDMRLEQVTLR-KTDAVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 624


>gi|119369934|gb|ABL67981.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 197/423 (46%), Positives = 277/423 (65%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGG+F+   YKVSGGLHGVGVSVVNALS  L+L I + G ++  ++  G  +
Sbjct: 1   EVIMTVLHAGGEFDNSLYKVSGGLHGVGVSVVNALSETLQLEIHQNGLVHRQTYHKGTPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G      GT + F P   I     F+++TL HR REL+FLN  + I L ++ + 
Sbjct: 61  APLAVVGET-QSRGTTIRFWPDMTIMETDQFSFETLAHRFRELAFLNPVMTIHLKEEETL 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
               + +  + G   F    +R ++   +     +   D    ++A ++ +   +E VL 
Sbjct: 120 REGSVPL--ERGHPVFCRISERKQENPARFLFFRKQLEDGAQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+ALT+ I  ++ +   +K ++    G+D REG T+V+S+++ 
Sbjct: 178 FANNIHTREGGTHVRGFRTALTKTINKFIREKQLNKGEEVR--GEDVREGLTAVISVRIS 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +ESF+++ L    +E PL AK I +K +  +  R+AAR+A
Sbjct: 236 NPQFEGQTKGKLGSSWVAGAMESFLSEALQDKFDEDPLVAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G + F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|19909745|dbj|BAB87068.1| DNA gyrase subunit B [bacterium MBIC3368]
          Length = 296

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 180/294 (61%), Positives = 224/294 (76%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISA 95
           D  SGLHHM+YEV+DN+IDE+L G+AD +TVTLN DGS TV+DNGRGIP D+H EEGISA
Sbjct: 1   DDGSGLHHMVYEVVDNSIDEALAGHADYVTVTLNADGSVTVTDNGRGIPVDIHPEEGISA 60

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L LRI R    + + F +G  
Sbjct: 61  AEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSTTLDLRIYRNDKEHFIRFHHGES 120

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             PL V G A   +GTEVTF PS + F+  +F+YDTL+HRLREL+FLNS  +I L D R 
Sbjct: 121 AAPLEVVGDAPGKSGTEVTFTPSPETFTKTEFDYDTLEHRLRELAFLNSGARIILTDNRG 180

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            EP    ++Y+GG+EAFV YLDR K PL++ P+ +   +D I++++AM WN  YHENVLC
Sbjct: 181 VEPHVEELYYEGGLEAFVRYLDRAKHPLIEEPVTMMAEKDGITVEVAMWWNSSYHENVLC 240

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           FTNNIPQ+DGGTHL+G R+ALTRQ+T Y + S   K++K S  G+DCREG + V
Sbjct: 241 FTNNIPQRDGGTHLAGFRAALTRQLTGYADTSGLLKREKVSPTGEDCREGLSCV 294


>gi|269799080|gb|ACZ43818.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 371

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/373 (56%), Positives = 275/373 (73%), Gaps = 4/373 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVS
Sbjct: 1   AGHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F P
Sbjct: 61  GGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWP 119

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+
Sbjct: 120 SHETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLN 178

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R AL
Sbjct: 179 VNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGAL 238

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 239 TRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 298

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLA
Sbjct: 299 VEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLA 358

Query: 416 DCSERDPKKSELF 428
           DC E+DP  SEL+
Sbjct: 359 DCQEKDPALSELY 371


>gi|18157436|dbj|BAB83770.1| DNA gyrase subunit B [Rhodobacter azotoformans]
          Length = 312

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/312 (57%), Positives = 219/312 (70%), Gaps = 8/312 (2%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DN IDE+L G+A  +TV ++ D S +V DNGRGIP D+H  EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNGIDEALAGHATAVTVKIHADSSVSVRDNGRGIPVDMHASEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+LRI R G  +   F NG
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGKEHFARFENG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTF-------LPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                L V   A  + GTEV F        P    FS  D+++ TL++RLREL+FLNS V
Sbjct: 121 ETVEHLRVVRDAPGEKGTEVRFLAAAKTNRPDGT-FSNLDYSFKTLENRLRELAFLNSGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+R  EP    +FY+GG+  FV YLDR K P+M  PI I G R  I +++AM WN
Sbjct: 180 RILLEDERPAEPLHSELFYEGGVREFVRYLDRSKSPVMPEPIFITGERGGIGVEIAMWWN 239

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D YHE VL FTNNIPQ+DGGTHL+G R ALTR IT Y + S  ++++K    GDD REG 
Sbjct: 240 DSYHETVLPFTNNIPQRDGGTHLAGFRGALTRTITKYAQDSGIARREKVDFTGDDAREGL 299

Query: 327 TSVLSIKMPDPR 338
           T VLS+K+PDP+
Sbjct: 300 TCVLSVKVPDPK 311


>gi|198042696|gb|ACH81173.1| GyrB [Pseudoalteromonas sp. UST050418-023]
          Length = 399

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 241/401 (60%), Positives = 310/401 (77%), Gaps = 6/401 (1%)

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG +YE  +  G+ 
Sbjct: 1   AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVP 60

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
           D PL   G +   TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R 
Sbjct: 61  DAPLAAIGDSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER- 118

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENV 273
            E +     Y+GGI AFV YL+R+K P+ +        R+   IS++++M+WND + EN+
Sbjct: 119 EENKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDAFQENI 178

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLS 331
            CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S
Sbjct: 179 YCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVS 238

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+PDP+FSSQTK+KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DA+  R+A
Sbjct: 239 VKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDAARAREA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAIL
Sbjct: 299 ARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           PL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ 
Sbjct: 359 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 399


>gi|27544674|dbj|BAC55032.1| DNA gyrase B subunit [Legionella waltersii]
          Length = 293

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/296 (55%), Positives = 214/296 (72%), Gaps = 3/296 (1%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  +GLHHM++EV+DN+IDE+L G+   I VT++ D S TV D+GRGIP D+HKEEG 
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDEALAGHCKEIFVTIHADESITVKDDGRGIPVDIHKEEGK 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G ++E  + +G
Sbjct: 61  SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLIRRHGKVHEQHYRHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           + D P+  TG   N TGT+V F PS+  F+  +F+YD L  RLRELS+LNS V I L D+
Sbjct: 121 VPDAPIAETG-TANSTGTQVWFKPSASTFTNIEFHYDILAKRLRELSYLNSGVCIHLFDE 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           RS   R+ T  Y+GGI+AFV +L+++K  +  +   +   +D I I+LA++WND Y E +
Sbjct: 180 RS--QRKDTFHYEGGIKAFVEHLNKNKTAVHPNVFAMTAEKDGIVIELALQWNDTYQETI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            CFTNNIPQKDGGTH++G R+ALTR + +Y+E    +KK K S  GDD REG T+V
Sbjct: 238 FCFTNNIPQKDGGTHMAGFRAALTRTLNNYIEHEGYAKKAKVSPTGDDSREGLTAV 293


>gi|320353624|ref|YP_004194963.1| DNA topoisomerase IV subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320122126|gb|ADW17672.1| DNA topoisomerase IV subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 610

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/619 (27%), Positives = 278/619 (44%), Gaps = 57/619 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +    YD   I+ L  L+ ++KRP MYIG     S    G++ ++ E+LDNA+DE + G+
Sbjct: 1   MTEHQYDESKIKTLSSLEHIRKRPGMYIGRLGDGSHPDDGIYILLKEILDNAVDEFIMGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + +  DG C V D GRGIP            E + + ++ G K+N + ++ S GL
Sbjct: 61  GKRIDIHIGEDGLCRVRDYGRGIPLGK-------VVECV-SVINTGAKYNTEVFQFSVGL 112

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +   R+G      F  G+L       G      GT + FLP S+
Sbjct: 113 NGVGTKAVNALSSHFTVTAFRDGRYKTAVFAQGLLQ--REEEGETTEKNGTLIEFLPDSE 170

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F+   +  RL   ++LN+ + + L               K G+   +       
Sbjct: 171 SFPGFRFDPQYVDQRLWRYAYLNAGLSLYL--------DRDLYLSKNGLLDLLDREVSS- 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + +      +       SI+ A    D Y E+   F N     +GGTHLS  R  + + I
Sbjct: 222 ERIYPPIHFVDK-----SIEFAFTHTDDYGESYFSFVNGTYTSEGGTHLSAFREGILKGI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +  K            G D R+G   +L++K+ +P F SQTK KL ++++R  + + V
Sbjct: 277 NEFTGK---------KFNGLDVRDGIVGILAVKVQEPVFESQTKNKLGNTDIRGPIVNAV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
            D ++  L + P  A+++V KV     VR   +  R   + K          +L DC   
Sbjct: 328 KDAVATHLYKFPETAEVLVDKVQRNERVRRELQSVRRDAKAKAKKIAF-KIPQLKDCKYH 386

Query: 419 ------ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
                  +  +++ LF+ EG SA GS    R    QA+  L+GK +NV   R D +  ++
Sbjct: 387 PSRGQASKPGRENMLFITEGQSAAGSIVSARDPMTQAVFSLKGKPMNVLGQRLDVLYKNE 446

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E+ +L+ AL          I  LRY K+I+ TDADVDG HIR LLLTFF      LI   
Sbjct: 447 EMYSLMQALNI-----EDSIADLRYDKVILATDADVDGLHIRNLLLTFFLHYFEQLIKQE 501

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-----ELFCDSKGVISKNDL 587
            +YI++ P++ +   +   Y   +  +++ +    +  +             G IS  + 
Sbjct: 502 RVYILETPIFRVRNKEKTFYCYSDRDMDEAITALKVKSKADRAVETTRFKGLGEISPPEF 561

Query: 588 RNFIDDALKIDKL-IKDFY 605
           + FI   +++ ++ +    
Sbjct: 562 KQFIGQDMRLRQVRLDRLS 580


>gi|315224100|ref|ZP_07865940.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga
           ochracea F0287]
 gi|314945833|gb|EFS97842.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga
           ochracea F0287]
          Length = 616

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/618 (28%), Positives = 292/618 (47%), Gaps = 58/618 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++   YD DSI+ L   + ++ RP MYIG     S    G++ ++ EV+DN IDE + G 
Sbjct: 1   MEEIRYDEDSIRSLDWQEHIRTRPGMYIGKLGDGSSADDGIYILLKEVIDNCIDEFVMGA 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V +  D    V D GRGIP            +V+ ++++ GGK++ +++K S GL
Sbjct: 61  GKTIDVKI-TDNQVEVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKKSIGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALS++ K+   R+G      F  G+L         +    GT V F+P   
Sbjct: 112 NGVGTKAVNALSTYFKVESVRDGQCKSAIFERGLLKEEGA-IEESQKRRGTSVAFIPDDT 170

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + +   L+   +LN  + I+   ++         + + G++  ++  + ++
Sbjct: 171 IFKNFKFRNEYVVRMLKNYVYLNPGLTINYNGEK--------YYSENGLKDLLTE-NNNE 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +  +   I ++G    I+I         Y E    F N      GGTHL+  + A  + I
Sbjct: 222 EDFLYPIIHLRGEDIEIAIS---HSKTQYSEEYYSFVNGQNTTQGGTHLNAFKEAYVKTI 278

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------R 353
             + +K++ +          D R+   + LSIK+ +P F SQTK KL S+E+       R
Sbjct: 279 RDFYKKNYDAS---------DVRKSIIAGLSIKVMEPVFESQTKTKLGSTEMGEGMPSVR 329

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGVL 405
           + +  F++  L  +L ++P  +  + +K++ A   R+        A  RA+  +     L
Sbjct: 330 TYINDFISRHLDDFLHKNPEISDALQRKIMQAQREREDLAGIRKLAKERAKKASLHNRKL 389

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               +   L D  +    +S LF+ EGDSA GS  + R    QA+  LRGK LN      
Sbjct: 390 RDCRV--HLTDTKDERALQSTLFITEGDSASGSITKSRDVTTQAVFSLRGKPLNTYGMSK 447

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL          ++ LRY+ I++ TDADVDG HIR LL+TFF +  
Sbjct: 448 KIVYENEEFNLLQAALNI-----EDSMDDLRYNNIVVATDADVDGMHIRLLLITFFLQFF 502

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P +I  G LYI++ PL+ +       Y   EE  E  +       EI  F    G IS +
Sbjct: 503 PEIIKEGHLYILQTPLFRVRNKTQKIYCYSEEEKEAAIDKLKGKPEITRF-KGLGEISPD 561

Query: 586 DLRNFIDDALKIDKLIKD 603
           + ++FI + +++D ++ D
Sbjct: 562 EFKDFIGEDIRLDPVMMD 579



 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 34/144 (23%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSI 729
              +L  +    F  +  +     +      +  +     KI           +D +   
Sbjct: 489 HIRLLLITFFLQFFPEIIKE--GHLYILQTPLFRVRNKTQKIYCYSEEEKEAAIDKL--- 543

Query: 730 GRKG-ISMQRYKGLGEMNASQ----------LWETTLNPDTRSLLRVKITDASQADDLFS 778
             KG   + R+KGLGE++  +          L     +P       V +      + L  
Sbjct: 544 --KGKPEITRFKGLGEISPDEFKDFIGEDIRL-----DP-------VMMDKTIHTEQLLE 589

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
             MG     R+EFI  N L   +D
Sbjct: 590 FYMGKNTPDRQEFIINN-LKVEID 612


>gi|86133355|ref|ZP_01051937.1| DNA topoisomerase IV subunit B [Polaribacter sp. MED152]
 gi|85820218|gb|EAQ41365.1| DNA topoisomerase IV subunit B [Polaribacter sp. MED152]
          Length = 619

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/667 (29%), Positives = 309/667 (46%), Gaps = 66/667 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS   +   Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN+IDE 
Sbjct: 1   MSKETK---YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILVKEVLDNSIDEY 57

Query: 57  LEGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           + G    I ++++  GS  TV D GRGIP            +V+ ++++ GGK++ K++K
Sbjct: 58  VMGAGKTIEISIH--GSKVTVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSKAFK 107

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            S GL+GVG   VNALSS+ ++   REG      F  G L+N            GT+V+F
Sbjct: 108 KSVGLNGVGTKAVNALSSYFRVESSREGKSASAEFSQGNLEN-EEFLEETSRRKGTKVSF 166

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +P   IF    F  + +   L+   +LN  + I    ++         F K G++  +  
Sbjct: 167 IPDETIFKNYKFRNEYVAKMLKNYVYLNPGLTIIFNGEK--------FFSKNGLKDLLED 218

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
            +     L    I ++G    I++         Y E    F N      GGTH S  R A
Sbjct: 219 NNNTDDMLYP-IIHLKGDDIEIAVT---HSKTQYSEEYYSFVNGQHTTQGGTHQSAFREA 274

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV--- 352
           + + +  +  KSF +          D R+   + ++IK+ +P F SQTK KL S+E+   
Sbjct: 275 IVKTVREFYGKSFEAS---------DIRKSIIAAIAIKVMEPVFESQTKTKLGSTEMGGE 325

Query: 353 ----RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVL 405
               R+ +  FV   L  +L ++P  A  ++KK++ A   R      R       +K  L
Sbjct: 326 LPTVRTYINDFVKTKLDNYLHKNPEVADKLLKKIVQAEKERKELSGIRKLARDRAKKASL 385

Query: 406 DIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                      L D  + +  ++ LF+ EGDSA GS  + R+   QA+  L+GK LN   
Sbjct: 386 HNKKLRDCRIHLGDIKKENYLETTLFITEGDSASGSITKSRNVNTQAVFSLKGKPLNSYG 445

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
                +  ++E   L  AL    G     +  LRY+ I+I TDADVDG HIR LL+TFF 
Sbjct: 446 LSKKIVYENEEFNLLQAALNIEDG-----LEDLRYNNIVIATDADVDGMHIRLLLITFFL 500

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           +  P LI  G LYI++ PL+ +   K   Y   +E   + +       EI  F    G I
Sbjct: 501 QFFPELIKEGHLYILETPLFRVRNKKQTFYCYSDEEKREAIEKLKGKPEITRF-KGLGEI 559

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           S N+  +FI D +++D ++ D      +  IEQ +    +  ++  +    + + L   L
Sbjct: 560 SPNEFVHFIGDDIRLDPVMLD-----KEMSIEQMLQ--FYMGKNTPDRQKFIINNLKVEL 612

Query: 643 NFIAEKS 649
           ++I E+ 
Sbjct: 613 DYIEEEV 619


>gi|295979549|dbj|BAJ07447.1| DNA gyrase subunit B [Brevundimonas diminuta]
 gi|295979553|dbj|BAJ07449.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 313

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/313 (61%), Positives = 235/313 (75%), Gaps = 7/313 (2%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+AD++TVTLN DGS TV+DNGRGIPT +H EEGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADLVTVTLNEDGSVTVTDNGRGIPTAIHAEEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+L I R+G  + + F  G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELVIYRDGKKHSVRFERG 120

Query: 154 ILDNPLVVTGSAGND-------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                L V G A          TGTEVTF PS   FS  DF+  TL+HRLREL+FLNS V
Sbjct: 121 ETVRSLAVVGDAPMREDKGRLLTGTEVTFFPSVTTFSHIDFDLKTLEHRLRELAFLNSGV 180

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
            I L D R  EP EI + Y+GG+EAFV +LD+ K P+++  I I+G +D I +DLA+ WN
Sbjct: 181 VIKLSDHRGAEPIEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGIELDLALWWN 240

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D YHE +LCFTNNIPQ+DGGTHLS  R++LTR + SY+E S  +KK+K +  G+D REG 
Sbjct: 241 DSYHETMLCFTNNIPQRDGGTHLSAFRASLTRVMGSYIESSGLAKKEKVAPTGEDAREGL 300

Query: 327 TSVLSIKMPDPRF 339
           T VLS+K+PDP+F
Sbjct: 301 TCVLSVKVPDPKF 313


>gi|332800585|emb|CBY89782.1| GyrB protein [Flavobacterium frigidarium]
          Length = 427

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 198/428 (46%), Positives = 279/428 (65%), Gaps = 11/428 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            IYE  +  G    P+   G      GT VTF P   IF+    ++YDTL  R+RELSFL
Sbjct: 61  KIYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFL 119

Query: 203 NSSVQISLIDKRSPEPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGISITFTDKREKDKDGNFVGEVFHSTEGLKEYIRYLDGNREPIIGHVISMDNDKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINK 494
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +      +I+K
Sbjct: 360 AKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTEEDSKALNISK 419

Query: 495 LRYHKIII 502
           LRYHK+II
Sbjct: 420 LRYHKVII 427


>gi|218259448|ref|ZP_03475180.1| hypothetical protein PRABACTJOHN_00838 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225102|gb|EEC97752.1| hypothetical protein PRABACTJOHN_00838 [Parabacteroides johnsonii
           DSM 18315]
          Length = 621

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/619 (28%), Positives = 286/619 (46%), Gaps = 56/619 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESL 57
           S   Q ++Y+ D I+ L  ++ +++RP MYIG     S    G++ ++ EVLDN+IDE +
Sbjct: 6   STMQQPTAYNDDDIKTLDWMEHIRRRPGMYIGKLGDGSYADDGIYVLLKEVLDNSIDEYM 65

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I VT+  +G+ +V D GRG+P     +        + ++++ G K++ K++K S
Sbjct: 66  MGYGKTIEVTV-EEGTVSVRDYGRGVPLGKVVD--------VSSKMNTGAKYDSKAFKKS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+GVG+  VNALSS+  +   R+G    + +   ++              GT   F+P
Sbjct: 117 VGLNGVGIKAVNALSSYFLITSHRDGECKRVEYSKAVITEE-APICPTEEANGTLTYFIP 175

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             +IF    +  + ++  L+   FLNS + I    K+           + G+   ++   
Sbjct: 176 DKEIFKDYQYKDEYIESLLKNYVFLNSGLTIIFNGKK--------FHSRNGLVDLLNENM 227

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
                 +   + ++G      I++ +  ++ Y E    F N      GGTHLS  R AL 
Sbjct: 228 T--TEPLYPIVHLKGED----IEVVITHSNQYGEEYYSFVNGQHTTQGGTHLSAFREALG 281

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS--- 354
           R I  Y  K+F            D R G  + +SIK+ +P F SQTK KL S ++     
Sbjct: 282 RVIKEYYNKNFEYS---------DIRAGVVAAISIKVEEPVFESQTKTKLGSKDMGPDGP 332

Query: 355 ----VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA------RRARDLTRRKGV 404
                +  F+   L  +L ++   +  +++K+ ++   R A        R R        
Sbjct: 333 SVGKFIGDFIKKELDNYLHKNAETSDALLRKIQESEKERKAIAGVTKLARERAKKANLHN 392

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +      L D    + + S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 393 KKLRDCRIHLNDTKGDNLEDSCIFITEGDSASGSITKSRDPNLQAVFSLRGKPLNSFGLT 452

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     +  LRY+K+II TDADVDG HIR LL+TFF + 
Sbjct: 453 KKIVYENEEFNLLQAALNIEDG-----LEGLRYNKVIIATDADVDGMHIRLLLITFFLQF 507

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI    +YI++ PL+ +   +   Y   EE   + +     + EI  F    G IS 
Sbjct: 508 FPDLIKRNHVYILQTPLFRVRNKQKTWYCYSEEERVNAIAAAGKNAEITRF-KGLGEISP 566

Query: 585 NDLRNFIDDALKIDKLIKD 603
           ++ ++FI   +++D +   
Sbjct: 567 DEFKHFIGKDIRLDPVTMK 585



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 32/181 (17%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
                 L   A   E    G   N  I+            +L  +    F     +   N
Sbjct: 458 ENEEFNLLQAALNIEDGLEGLRYNKVIIATDADVDGMHIRLLLITFFLQFFPDLIK--RN 515

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ------ 749
            +      +  +               ++ I + G K   + R+KGLGE++  +      
Sbjct: 516 HVYILQTPLFRVRNKQKTWYCYSEEERVNAIAAAG-KNAEITRFKGLGEISPDEFKHFIG 574

Query: 750 ----LWETTLNPDTRSLLRVKITDASQADDLFSRL---MGDEVEPRREFIQENSLPSALD 802
               L     +P   ++ +    D  +       L   MG     R+ FI +N L    D
Sbjct: 575 KDIRL-----DPV--TMKK---EDLVK-----DMLEFYMGKNTMERQNFIIDN-LVVEED 618

Query: 803 I 803
           +
Sbjct: 619 V 619


>gi|110612699|gb|ABG78312.1| GyrB [uncultured bacterium]
          Length = 413

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 242/412 (58%), Positives = 310/412 (75%), Gaps = 1/412 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +YKVSGGLHGVGVSVVNALS  L L + R+G ++   +  G     +     A
Sbjct: 3   GGKFDDNAYKVSGGLHGVGVSVVNALSEHLWLEVHRQGRMHRQEYRMGEPLFAMRDV-EA 61

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT V FLPS+++F++ +F+YD L  RLREL+FLNS ++I L D R  + RE    Y
Sbjct: 62  SVRRGTTVRFLPSTEVFAITEFHYDILAKRLRELAFLNSGLRIELADLRPGQEREDVFAY 121

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI AFV +L   K PL    I +  S D I +++A++W DGY E V C+TNNIPQ+DG
Sbjct: 122 EGGICAFVQHLVELKTPLHPKVISLNYSADGIEVEVALQWTDGYQEGVYCYTNNIPQRDG 181

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR +T Y+E+   +K  K  + GDD REG  +VLS+K+PDP+FSSQTKE
Sbjct: 182 GTHLTGFRAALTRTLTQYIERENLAKNAKVQLSGDDMREGLIAVLSVKVPDPKFSSQTKE 241

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV++VVE  V   L  +L E+P EA+ I  KV+ A+  R+AAR+AR++TRRKG L
Sbjct: 242 KLVSSEVKTVVEQGVGQTLEEFLLENPGEARTIAGKVVGAARAREAARKAREMTRRKGAL 301

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA LPGKLADC E+DP  SELFLVEGDSAGGSAKQGR+R+NQA+LPL+GKILNVE+ARF
Sbjct: 302 DIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKNQAVLPLKGKILNVEKARF 361

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           D+ML+S E+GTLITALG GIG+D ++ +K+RYH+III+TDADVDG+HIRTLL
Sbjct: 362 DRMLASAEVGTLITALGCGIGKDEYNPDKIRYHRIIIITDADVDGSHIRTLL 413


>gi|307939302|gb|ADN95842.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 440

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 214/441 (48%), Positives = 297/441 (67%), Gaps = 21/441 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E IMT L AGGKF++ SYKVSGGLHGVGVS VNALS+ LK+ ++R G+ YE  +  GI  
Sbjct: 1   EXIMTVLXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS- 215
             +   G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R  
Sbjct: 61  YDVKEVGLSE-EHGTEVQFLPDATIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREK 119

Query: 216 ---PEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHE 271
                 R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y E
Sbjct: 120 LEGGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NV  + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S
Sbjct: 180 NVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R A
Sbjct: 240 VKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAIL
Sbjct: 300 ARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLR 496
           PLRGKILNVE+A+  ++L ++EI  +ITALG                G      + +KLR
Sbjct: 360 PLRGKILNVEKAQEHRILENEEIKNMITALGVSFNERKSLAFTTDDDGTESGPLNFSKLR 419

Query: 497 YHKIIIMTDADVDGAHIRTLL 517
           YHK+IIMTDADVDG+HIRTLL
Sbjct: 420 YHKVIIMTDADVDGSHIRTLL 440


>gi|110612717|gb|ABG78321.1| GyrB [uncultured bacterium]
          Length = 411

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 242/412 (58%), Positives = 311/412 (75%), Gaps = 1/412 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +YKVSGGLHGVGVSVVNALS  L L + R+G ++   +  G     +     A
Sbjct: 1   GGKFDDNAYKVSGGLHGVGVSVVNALSEHLWLEVHRQGRMHRQEYRMGEPLFAMRDV-EA 59

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT V FLPS+++F++ +F+YD L  RLREL+FLNS ++I L D R  + RE    Y
Sbjct: 60  SVRRGTTVRFLPSTEVFAITEFHYDILAKRLRELAFLNSGLRIELADLRPGQEREDVFAY 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI AFV +L   K PL  + I +    D I +++A++W DGY E V C+TNNIPQ+DG
Sbjct: 120 EGGICAFVQHLVELKTPLHPNVISLNYRADGIEVEVALQWTDGYQEGVYCYTNNIPQRDG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR +T Y+E+   +K  K  + GDD REG  +VLS+K+PDP+FSSQTKE
Sbjct: 180 GTHLTGFRAALTRTLTQYIERENLAKNAKVQLSGDDMREGLIAVLSVKVPDPKFSSQTKE 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV++VVE  V   L  +L E+P EA+ I  KV+DA+  R+AAR+AR++TRRKG L
Sbjct: 240 KLVSSEVKTVVEQGVGQTLEEFLLENPGEARTIAGKVVDAARAREAARKAREMTRRKGAL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA LPGKLADC E+DP  SELFLVEGDSAGGSAKQGR+R+NQA+LPL+GKILNVE+ARF
Sbjct: 300 DIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKNQAVLPLKGKILNVEKARF 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           D+ML+S E+GTLITALG GIG+D ++ +K+RYH+III+TDADVDG+HIRTLL
Sbjct: 360 DRMLASAEVGTLITALGCGIGKDEYNPDKIRYHRIIIITDADVDGSHIRTLL 411


>gi|262405894|ref|ZP_06082444.1| DNA topoisomerase IV, B subunit [Bacteroides sp. 2_1_22]
 gi|294647852|ref|ZP_06725404.1| DNA topoisomerase IV subunit B [Bacteroides ovatus SD CC 2a]
 gi|294806249|ref|ZP_06765096.1| DNA topoisomerase IV subunit B [Bacteroides xylanisolvens SD CC 1b]
 gi|262356769|gb|EEZ05859.1| DNA topoisomerase IV, B subunit [Bacteroides sp. 2_1_22]
 gi|292636760|gb|EFF55226.1| DNA topoisomerase IV subunit B [Bacteroides ovatus SD CC 2a]
 gi|294446505|gb|EFG15125.1| DNA topoisomerase IV subunit B [Bacteroides xylanisolvens SD CC 1b]
          Length = 625

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/655 (27%), Positives = 294/655 (44%), Gaps = 58/655 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLE 58
           DN     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 10  DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I +T+  +   +V D GRGIP        I A  +    L+ GGK++ K++K S 
Sbjct: 70  QAGKKIEITVEENLRVSVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFKKSV 121

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  ++R  R+G +   +F  G L      T +   + GT + F P 
Sbjct: 122 GLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTD--ETQNTEEENGTYIFFEPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I     R           + G+   ++    
Sbjct: 180 NTLFLNYCFKPEFIETMLRNYTYLNTGLAIIYNGHRI--------LSRNGLVDLLNDNMT 231

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   I ++G      I++A      Y E    F N      GGTH S  +  + R
Sbjct: 232 A--TGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 285

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------ 352
            I  +  K+             D R G  + +++ + +P F SQTK KL S+ +      
Sbjct: 286 TIKEFFNKNMDYT---------DIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMVPGGVT 336

Query: 353 -RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTRRKGVLDIASL 410
               V  F+   +  +L ++   A+ I +K+ ++   R A     +    R    ++ + 
Sbjct: 337 VNKYVGDFIKQEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARERAKKANLHNR 396

Query: 411 PGKLADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +       DP      + S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 KLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 456

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 457 KKVVYENEEFNLLQAALNIEDG-----LDGLRYNKVIVATDADVDGMHIRLLLITFFLQF 511

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   EE   + +   S + EI  F    G IS 
Sbjct: 512 FPDLIKKGHVYILQTPLFRVRNKKKTIYCYSEEERVNAINELSPNPEITRF-KGLGEISP 570

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 571 DEFKHFIGKDMRLEQVSLR-KTDAVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 624


>gi|332800589|emb|CBY89784.1| GyrB protein [Flavobacterium gelidilacus]
          Length = 427

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 199/428 (46%), Positives = 279/428 (65%), Gaps = 11/428 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFL 202
            IYE  +  G    P+   G   +  GT VTF P   IF+   +F+YDTL  R+RELSFL
Sbjct: 61  KIYEQEYERGKALYPVKQIG-TTDKRGTIVTFYPDDTIFTQSIEFSYDTLSARMRELSFL 119

Query: 203 NSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKREVDKDGNFVSEIFHSDEGLKEYIRYLDANREPIIGHVISMDSDKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGLLDKLKFEIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +AKII
Sbjct: 240 GDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDAKII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NK 494
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +        +K
Sbjct: 360 AKQGRDRMFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTEEDSKALNLSK 419

Query: 495 LRYHKIII 502
           LRYHK++I
Sbjct: 420 LRYHKVVI 427


>gi|269799126|gb|ACZ43841.1| DNA gyrase subunit B [Moritella marina]
          Length = 371

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 205/373 (54%), Positives = 273/373 (73%), Gaps = 4/373 (1%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   + V ++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSG
Sbjct: 1   GHCTDVVVKIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R G+I++  + +G    P+ V G     TGTE+ F PS
Sbjct: 61  GLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDIE-TTGTELRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ 
Sbjct: 120 HETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNV 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIHCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R + +Y+EK    KK K  S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 239 RTLNNYMEKEGFLKKAKTTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 298

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 299 EQSMGEKLAEYLLENPKEASTVVMKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 358

Query: 417 CSERDPKKSELFL 429
           C E+DP  SEL++
Sbjct: 359 CQEKDPALSELYI 371


>gi|154490322|ref|ZP_02030583.1| hypothetical protein PARMER_00555 [Parabacteroides merdae ATCC
           43184]
 gi|154088933|gb|EDN87977.1| hypothetical protein PARMER_00555 [Parabacteroides merdae ATCC
           43184]
          Length = 621

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 175/619 (28%), Positives = 286/619 (46%), Gaps = 56/619 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESL 57
           S   Q ++Y+ D I+ L  ++ +++RP MYIG     S    G++ ++ EVLDN+IDE +
Sbjct: 6   STMQQPTAYNDDDIKTLDWMEHIRRRPGMYIGKLGDGSYADDGIYVLLKEVLDNSIDEYM 65

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I VT+  +G+ +V D GRG+P     +        + ++++ G K++ K++K S
Sbjct: 66  MGYGKTIEVTV-EEGTVSVRDYGRGVPLGKVVD--------VSSKMNTGAKYDSKAFKKS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+GVG+  VNALSS+  +   R+G    + +   ++              GT   F+P
Sbjct: 117 VGLNGVGIKAVNALSSYFLITSYRDGECKRVEYNKAVITEE-APICPTEEANGTLTYFIP 175

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             +IF    +  + ++  L+   FLNS + I    K+           + G+   ++   
Sbjct: 176 DKEIFKDYQYKDEYIESLLKNYVFLNSGLTIVFNGKK--------FHSRNGLVDLLNENM 227

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
                 +   + ++G      I++ +  ++ Y E    F N      GGTHLS  R AL 
Sbjct: 228 T--TEPLYPIVHLKGED----IEVVITHSNQYGEEYYSFVNGQHTTQGGTHLSAFREALG 281

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS--- 354
           R I  Y  K+F            D R G  + +SIK+ +P F SQTK KL S ++     
Sbjct: 282 RVIKEYYNKNFEYS---------DIRAGVVAAISIKVEEPVFESQTKTKLGSKDMGPDGP 332

Query: 355 ----VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA------RRARDLTRRKGV 404
                V  F+   L  +L ++   +  +++K+ ++   R A        R R        
Sbjct: 333 SVGKFVGDFIKKELDNYLHKNAETSDALLRKIQESEKERKAIAGVTKLARERAKKANLHN 392

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +      L D    + + S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 393 KKLRDCRIHLNDTKGDNLEDSCIFITEGDSASGSITKSRDPNLQAVFSLRGKPLNSFGLT 452

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     +  LRY+K+II TDADVDG HIR LL+TFF + 
Sbjct: 453 KKIVYENEEFNLLQAALNIEDG-----LEGLRYNKVIIATDADVDGMHIRLLLITFFLQF 507

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI    +YI++ PL+ +   +   Y   EE   + +     + EI  F    G IS 
Sbjct: 508 FPDLIKRNHVYILQTPLFRVRNKQKTWYCYSEEERVNAIAAAGKNAEITRF-KGLGEISP 566

Query: 585 NDLRNFIDDALKIDKLIKD 603
           ++ ++FI   +++D +   
Sbjct: 567 DEFKHFIGKDIRLDPVTMK 585



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 32/181 (17%)

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
                 L   A   E    G   N  I+            +L  +    F     +   N
Sbjct: 458 ENEEFNLLQAALNIEDGLEGLRYNKVIIATDADVDGMHIRLLLITFFLQFFPDLIK--RN 515

Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ------ 749
            +      +  +               ++ I + G K   + R+KGLGE++  +      
Sbjct: 516 HVYILQTPLFRVRNKQKTWYCYSEEERVNAIAAAG-KNAEITRFKGLGEISPDEFKHFIG 574

Query: 750 ----LWETTLNPDTRSLLRVKITDASQADDLFSRL---MGDEVEPRREFIQENSLPSALD 802
               L     +P   ++ +    D  +       L   MG     R+ FI +N L    D
Sbjct: 575 KDIRL-----DPV--TMKK---EDLVK-----DMLEFYMGKNTMERQNFIIDN-LVVEED 618

Query: 803 I 803
           +
Sbjct: 619 V 619


>gi|160884652|ref|ZP_02065655.1| hypothetical protein BACOVA_02641 [Bacteroides ovatus ATCC 8483]
 gi|156109687|gb|EDO11432.1| hypothetical protein BACOVA_02641 [Bacteroides ovatus ATCC 8483]
          Length = 625

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/655 (27%), Positives = 293/655 (44%), Gaps = 58/655 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLE 58
           DN     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 10  DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I +T+  +   +V D GRGIP        I A  +    L+ GGK++ K++K S 
Sbjct: 70  QAGKKIEITVEENLRVSVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFKKSV 121

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  ++R  R+G +   +F  G L      T +   + GT + F P 
Sbjct: 122 GLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTD--ETKNTEEENGTYIFFEPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I     R           + G+   ++    
Sbjct: 180 NTLFLNYCFKPEFIETMLRNYTYLNTGLAIIYNGHRI--------LSRNGLVDLLNDNMT 231

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   I ++G      I++A      Y E    F N      GGTH S  +  + R
Sbjct: 232 A--TGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 285

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------ 352
            I  +  K+             D R G  + +++ + +P F SQTK KL S+ +      
Sbjct: 286 TIKEFFNKNMDYT---------DIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMVPGGVT 336

Query: 353 -RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTRRKGVLDIASL 410
               V  F+   +  +L ++   A++I +K+ ++   R A     +    R    ++ + 
Sbjct: 337 VNKYVGDFIKQEVDNFLHKNADIAEVIQQKIQESEKERKAIAGVTKLARERAKKANLHNR 396

Query: 411 PGKLADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +       DP      + S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 KLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 456

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 457 KKVVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLLITFFLQF 511

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   EE   + +     + EI  F    G IS 
Sbjct: 512 FPDLIKKGHVYILQTPLFRVRNKKKTNYCYSEEERINAINELGPNPEITRF-KGLGEISP 570

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 571 DEFKHFIGKDMRLEQVTLR-KTDAVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 624


>gi|149199675|ref|ZP_01876707.1| DNA topoisomerase IV subunit B [Lentisphaera araneosa HTCC2155]
 gi|149137192|gb|EDM25613.1| DNA topoisomerase IV subunit B [Lentisphaera araneosa HTCC2155]
          Length = 603

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/618 (27%), Positives = 279/618 (45%), Gaps = 54/618 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M++    + YD   IQ L  L+ ++KRP MYIG     S    G++ ++ EVLDN IDE 
Sbjct: 1   MAEKKAPAEYDEKQIQTLDPLEHIRKRPGMYIGRLGNGSNQNDGIYVLLKEVLDNCIDEF 60

Query: 57  LEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKS 113
           +  + + I + ++ + G+    D GRGIP             V+     ++ GGK++  +
Sbjct: 61  IMNHGNKIDLKIDTEAGTFYTRDYGRGIPLGA----------VVDCVSKMNTGGKYDGNA 110

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           ++ S GL+GVG   VNALS+  +++  R+G   E  F  G+L +     G    + GTEV
Sbjct: 111 FEFSVGLNGVGTKAVNALSAHFRVKSFRDGKFKEACFEEGVLVS--ENDGKTDEENGTEV 168

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS +IF     +   +  R+   ++LN  + + L  ++         + + G+  F+
Sbjct: 169 EFSPSREIFPKYKIDLGFIDRRMWGYAYLNRGLSLYLNGQK--------FYSRNGLRDFI 220

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                  K +    +       +  ++        Y EN   + N     DGGTH    R
Sbjct: 221 E------KEINDEKLYDIIYHRDDRLEFGFCHTGNYGENYYSYVNGQYTNDGGTHQQAFR 274

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             + + +  Y  K+           G D R+G    +++K+ +P F SQTK KL ++E+R
Sbjct: 275 EGILKGVNDYAGKN---------FDGSDVRDGLFGAVAVKVKEPIFESQTKNKLGNTEIR 325

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S V + V   ++ +L ++   A  +++KV     +R           +     ++    K
Sbjct: 326 SEVVNKVKAFVTDFLHKNKNVADRLLEKVTLNEKMRKNITDL-KKLAKDKQKKVSFKIPK 384

Query: 414 LADC------SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           L DC           ++S +F+ EGDSA GS    R    QA+ PLRGK  N    + + 
Sbjct: 385 LRDCKHHLNDKSTLGEESMIFITEGDSATGSMISCRDVLTQALFPLRGKPKNSHNMKREF 444

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E+  ++ A+          ++ LRY K+II TDAD DG HIR LLLT+F      
Sbjct: 445 VYKNEELYFMMKAINI-----EDSLDDLRYAKVIIATDADQDGLHIRNLLLTYFLTFFEG 499

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+ NG LYI++ P+Y +   K   Y  DEE  ++ +       EI  F     +      
Sbjct: 500 LVTNGHLYILETPIYRVRNKKETVYCYDEEEKDEAVAKLGRGHEITRFKGLGEISPNEFG 559

Query: 588 RNFIDDALKIDKLIKDFY 605
           +   +D   I   I+   
Sbjct: 560 QFIGEDMRIIQVNIEKMS 577



 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 29/115 (25%)

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE--------- 744
           +  +      I  +    + +         + +  +GR G  + R+KGLGE         
Sbjct: 503 NGHLYILETPIYRVRNKKETVYCYDEEEKDEAVAKLGR-GHEITRFKGLGEISPNEFGQF 561

Query: 745 ----MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
               M                +++V I   S    +    MG     R++FI +N
Sbjct: 562 IGEDM---------------RIIQVNIEKMSDIPHVLDFFMGSNTGDRKQFIMDN 601


>gi|27544678|dbj|BAC55034.1| DNA gyrase B subunit [Tatlockia maceachernii]
          Length = 389

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 240/392 (61%), Positives = 306/392 (78%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+R G ++E  + +G+ D+PL VTG A + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLTIRRNGKVHEQHYRHGVPDSPLAVTGEA-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+V F PS   FS  +F+YD L  RLRELSFLNS V+I L D+R+ +    T  Y+GGI+
Sbjct: 60  TQVWFKPSPATFSNIEFHYDILAKRLRELSFLNSGVRIHLYDERTQKQ--DTFCYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+R+K P+M     + G +DNIS++L+++WND + E + CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEHLNRNKTPIMPVVFSLSGEKDNISVELSLQWNDSFQETIFCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E    +KK K +  GDD REG T+VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRTLNSYIENEGYAKKAKITTTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VES V++ L+ +L E+P  AK IV K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKAAVESLVSEKLNDFLLENPSIAKSIVGKIIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG D +D +K RYH+III
Sbjct: 358 SQEVATLITALGCGIGPDEYDPDKTRYHRIII 389


>gi|148470242|gb|ABQ66068.1| gyrase b [uncultured bacterium]
 gi|148470258|gb|ABQ66076.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 204/423 (48%), Positives = 289/423 (68%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++G  +   +  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL VTG + + TGT + F P   I     F+YD L HR RELSFLN S+ I+L ++ + 
Sbjct: 61  SPLAVTG-SSDRTGTAIRFYPDLTIMETDQFSYDVLAHRFRELSFLNPSLTITLAEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+S+++ +K+ L +     +   +  + +++ ++ D    E +L 
Sbjct: 119 -LRESVFHDEGGIRSFLSFVNENKRVLHEPLFFRKVLENGATFEISFQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GG+H+ G RSALT+ +  ++     +K ++  V G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEE--VKGEDIREGLSAIVSIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+++ L    E+    A+ I  K + ++  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+ +  +K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKTKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|148616464|gb|ABQ96975.1| GyrB [Nocardiopsis metallicus]
          Length = 424

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 199/425 (46%), Positives = 285/425 (67%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVG+SVVNALS+ L + I+++G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGISVVNALSTALDVEIRQQGHVWRQHYEMTAPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L + G   ++TGT++TF     IF    F+++TL  R++E++FLN  + I++ D+R  
Sbjct: 62  GEL-IKGEETDETGTQITFWADGSIFETTTFSFETLARRMQEMAFLNKGLSITIRDERPD 120

Query: 217 EPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
              +     T  Y+ G+  +V +++  K+P   S I  +   + I++++AM+WN  Y  +
Sbjct: 121 HIDDAPVVNTFHYEEGLSDYVRHINAKKEPAHASIISFEEDGEGIAVEVAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y       +  + ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQKLLRDKEDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P E K IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEGKDIVSKASQAARARVAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR+  NQAILP
Sbjct: 301 RQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHNQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI ++ FD  KLRYHK+I+MTDADVDG+H
Sbjct: 361 IRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEE-FDAEKLRYHKVILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|164608582|gb|ABY62582.1| DNA gyrase beta subunit [Aliivibrio fischeri]
          Length = 397

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 239/399 (59%), Positives = 309/399 (77%), Gaps = 3/399 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G  + PL V G   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DT 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT++ F PS + F+   F Y+ L  RLRELSFLNS V I L D R  E +     Y+GG
Sbjct: 60  TGTKIRFWPSEETFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFMYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           I+AFV +L+R+K P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 119 IQAFVQHLNRNKTPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGT 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G RSALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 HLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDI
Sbjct: 239 VSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 AGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 358

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           MLSSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 MLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 397


>gi|326799058|ref|YP_004316877.1| DNA topoisomerase type II subunit alpha B [Sphingobacterium sp. 21]
 gi|326549822|gb|ADZ78207.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Sphingobacterium sp. 21]
          Length = 626

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/621 (27%), Positives = 281/621 (45%), Gaps = 55/621 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           ++Y+ DSI+ L   + ++ RP MYIG     S    G++ ++ EV+DN+IDE + G    
Sbjct: 2   TNYNEDSIRSLDWKEHIRLRPGMYIGKLGDGSAYDDGIYVLLKEVVDNSIDEFVMGAGKT 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +++  +   +V D GRGIP         S  +V+ ++++ GGK++ K+++ S GL+GV
Sbjct: 62  IDISV-SELKVSVRDYGRGIPIG-------SVVDVV-SKINTGGKYDSKAFQKSVGLNGV 112

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G   VNALSS   ++  R G      F  G L              GT VTF+P   IF 
Sbjct: 113 GTKAVNALSSSFVVQSYRAGRTRIAEFSKGELLKD--EEKETTQRNGTAVTFVPDDSIFR 170

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +  + +++ +    FLN+ + ++   ++           + G+   +      +   
Sbjct: 171 NYKYRPEFVENMIWNYVFLNTGLTVNFNGQK--------FVSENGLRDLLERNIDVEGMR 222

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I ++G      I++A+     Y E    F N      GGTH +  R A+ + +  +
Sbjct: 223 YP-IIHLKGED----IEIALTHGQQYGEEYYSFVNGQHTTQGGTHQAAFREAVVKTVREF 277

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SEVRSVV 356
            +K F +          D R      ++IK+ +P F SQTK KL S         VR+ +
Sbjct: 278 YKKEFDAS---------DIRASVIGAIAIKVQEPVFESQTKTKLGSQSIGPDGPTVRTFI 328

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDI--ASLP 411
             FV   L  +L +HP  A  ++K++L +   R      +   +   +K  L        
Sbjct: 329 NDFVKKSLDDYLHKHPDTADALLKRILQSERERKDIAGIKKLANERAKKASLHNRKLRDC 388

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
               D      +++ LF+ EGDSA GS  + R  + QA+  L+GK LN        +  +
Sbjct: 389 KIHYDDKNERNQETTLFITEGDSASGSITKSRDVQTQAVFSLKGKPLNAFGLTKKVVYEN 448

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +E   L  AL    G     I+ LRY+ I+I TDADVDG HIR LL+TFF +  P L+  
Sbjct: 449 EEFNLLQHALNIEDG-----IDGLRYNNIVIATDADVDGMHIRLLLMTFFLQFFPDLVKA 503

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G + I++ PL+ +   K   Y   +E  +  +I      EI  F    G IS ++   FI
Sbjct: 504 GHVSILQTPLFRVRNKKETIYCYSDEERQRAIIKLGGKPEITRF-KGLGEISPDEFGLFI 562

Query: 592 DDALKIDKLIKDFYPNHDKTF 612
              +++D +I        +  
Sbjct: 563 GKDMRLDPVILSKDQKIQQLL 583


>gi|297621779|ref|YP_003709916.1| DNA topoisomerase IV, subunit B [Waddlia chondrophila WSU 86-1044]
 gi|297377080|gb|ADI38910.1| DNA topoisomerase IV, subunit B [Waddlia chondrophila WSU 86-1044]
          Length = 605

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/653 (29%), Positives = 299/653 (45%), Gaps = 59/653 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M+       YD  +IQ L  L+ ++KR  MYIG     S    G++ +I EV+DN IDE 
Sbjct: 1   MAKK-----YDETTIQTLDALEHIRKRTGMYIGRLGDGSHYDDGIYILIKEVIDNCIDEF 55

Query: 57  LEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           + G  + I +T + D G  TV D GRGIP      E +S       +++ G K+N   ++
Sbjct: 56  IMGNGNQILITKDQDLGKITVRDFGRGIPLGKV-IECVS-------QINTGAKYNDDVFQ 107

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            S GL+GVG   VNALSS   +R  REG   E  F  G L       G      GT V F
Sbjct: 108 FSVGLNGVGTKAVNALSSRFLVRSHREGKFVEAEFSKGRLQKD--KKGKTQEKDGTYVEF 165

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +P S+IF    F+ + +  RL    +LN+ + I+   +R             G+   ++ 
Sbjct: 166 IPDSEIFKSFKFDDEYIVKRLWNYVYLNTGLTINYNGERIRSDH--------GLLDLLNQ 217

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
            +  ++ L +             ++ A      Y E+   F N     DGGTHLS  R  
Sbjct: 218 -EVSEEGLYEPLHYKSKQ-----LEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREG 271

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           L + +  Y +K+           G D REG    ++I++ DP F SQTK KL ++E+R+ 
Sbjct: 272 LLKGVNEYAKKN---------FQGVDVREGVFGTVAIRIQDPVFESQTKNKLGNTEIRAP 322

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           +   V + +   L +HP  AK I++++     VR     A     ++    I+    KL 
Sbjct: 323 LVQEVKEAVVNLLFKHPSTAKKIIERIAFNEKVRK-ELSAVKKEAKEKQKKISFKIPKLR 381

Query: 416 DCS------ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           D         +  +K+ +FL EGDSA  S    R    QA+  LRGK LNV   + D++ 
Sbjct: 382 DSKYHFGDGSKYAEKTMIFLTEGDSASASIVSSRDPLTQAVFSLRGKPLNVFGMKMDQLY 441

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            ++E+  +++AL         DI+ LRY K+++ TDADVDG HIR LL+T F      L+
Sbjct: 442 KNEEMFNVMSALNI-----EEDISNLRYEKVVLATDADVDGMHIRNLLITLFLTYFEGLV 496

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
            NG LYI++ PL+ +   +   Y   E+  E  +       EI  F    G IS  + + 
Sbjct: 497 LNGHLYILETPLFKVRNKEKTIYCYSEKEKEKAVKELKKGVEITRF-KGLGEISPQEFKQ 555

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           FI   +++  +  + + +   T        G    E  + I  +L ++    L
Sbjct: 556 FIGPDIRLIPVAVNSFSDIKPTLQF---YMGKNTPERKKFIMNNLVNEDQELL 605


>gi|148616444|gb|ABQ96965.1| GyrB [Nocardiopsis chromatogenes]
          Length = 420

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 199/421 (47%), Positives = 280/421 (66%), Gaps = 6/421 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L+  ++R+G+++  ++      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTRLEAEVRRDGHVWRQTYEMTRPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             +   G    D+GT++TF     IF    ++++TL  R++E++FLN  + I+L D+R  
Sbjct: 62  ADVAK-GEETADSGTQITFWADPSIFETTTYSFETLARRMQEMAFLNKGLSITLRDERPE 120

Query: 217 EPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
              +     T  Y+  +  FV +++  K+P   S I  +   + IS+++AM+WN  Y  +
Sbjct: 121 FAPDGTAVQTFHYEDDLVDFVRHINAKKEPSHASVIDFEEDGEGISVEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y  +     +   ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRTALTSVVNRYAREQRLLLEKDDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   ++ L  W E +P EAK +V K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQRVTHEHLRDWFERNPGEAKDVVSKANQAARARIAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P+KSE+++VEGDSAGGSAK GR    QAILP
Sbjct: 301 RQARDLTRRKTLLESTSLPGKLSDCQSAEPEKSEVYIVEGDSAGGSAKGGRDPLYQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKII+MTDADVDG+H
Sbjct: 361 IRGKILNVEKARIDRILKNNEVQAIITALGTGI-HDDFDIDKLRYHKIILMTDADVDGSH 419

Query: 513 I 513
           I
Sbjct: 420 I 420


>gi|260172993|ref|ZP_05759405.1| DNA topoisomerase IV subunit B [Bacteroides sp. D2]
 gi|315921271|ref|ZP_07917511.1| DNA topoisomerase IV subunit B [Bacteroides sp. D2]
 gi|313695146|gb|EFS31981.1| DNA topoisomerase IV subunit B [Bacteroides sp. D2]
          Length = 625

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 180/655 (27%), Positives = 292/655 (44%), Gaps = 58/655 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLE 58
           DN     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 10  DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I +T+  +   +V D GRGIP        I A  +    L+ GGK++ K++K S 
Sbjct: 70  QAGKKIEITVEENLRVSVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFKKSV 121

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  ++R  R+G +   +F  G L      T S   + GT + F P 
Sbjct: 122 GLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTD--ETQSTEEENGTYIFFEPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I     R           + G+   ++    
Sbjct: 180 NTLFLNYCFKPEFIETMLRNYTYLNTGLAIIYNGHRI--------LSRNGLVDLLNDNMT 231

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   I ++G      I++A      Y E    F N      GGTH S  +  + R
Sbjct: 232 A--TGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 285

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------ 352
            I  +  K+             D R G  + +++ + +P F SQTK KL S+ +      
Sbjct: 286 TIKEFFNKNMDYT---------DIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMVPGGVT 336

Query: 353 -RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTRRKGVLDIASL 410
               V  F+   +  +L ++   A+ I +K+ ++   R A     +    R    ++ + 
Sbjct: 337 VNKYVGDFIKQEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARERAKKANLHNR 396

Query: 411 PGKLADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +       DP      + S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 KLRDCRVHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 456

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 457 KKVVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLLITFFLQF 511

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   EE   + +     + EI  F    G IS 
Sbjct: 512 FPDLIKKGHVYILQTPLFRVRNKKKTNYCYSEEERINAINELGPNPEITRF-KGLGEISP 570

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 571 DEFKHFIGKDMRLEQVTLR-KTDAVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 624


>gi|167749708|ref|ZP_02421835.1| hypothetical protein EUBSIR_00666 [Eubacterium siraeum DSM 15702]
 gi|167657331|gb|EDS01461.1| hypothetical protein EUBSIR_00666 [Eubacterium siraeum DSM 15702]
 gi|291556469|emb|CBL33586.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Eubacterium siraeum V10Sc8a]
          Length = 667

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/670 (25%), Positives = 302/670 (45%), Gaps = 35/670 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD +S++ LKG D V+ RP +  G  DG  G  H ++E+L N+IDE+ EG+   I
Sbjct: 1   MAKKNYDDNSLKQLKGPDQVRLRPGVIFGS-DGLDGCCHSVFEILSNSIDEAREGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVSGGLH 121
            VT  +D S  V D GRGIP D +K E     E+    L+AGGK++  S   Y  S GL+
Sbjct: 60  IVTRFLDKSIEVQDYGRGIPIDFNKNEEKYNWELAFCTLYAGGKYDNNSGDNYSYSLGLN 119

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFLPS 178
           G+G+      + ++++       IY++ F  G              +   TGT++ + P 
Sbjct: 120 GLGLCSTQFAAEYMEVESNNGTWIYDLRFEKGYNVEKEERGFRRHQSDGTTGTKIKWKPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAF 232
            D+F+  D  ++     LR  + +N  +   L ++   E        E    Y+ GI  +
Sbjct: 180 LDVFTDIDVPFEYFDDVLRRQAVVNDGLTFVLRNEVRDEETGETRFEEHIYCYENGISDY 239

Query: 233 VSYLDRHKKPLMQSPIRIQ------GSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDG 285
           +  +        +     Q        +    + + + +        +  + N+   + G
Sbjct: 240 LKEIVGDTALTTEQVWSAQRTGKDREDKPEYKVKMKVAFVFSNKVQLIQHYHNSSWLEHG 299

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G+    +++A T QI  +++ +    K +  +   D  +    + S       + +QTK+
Sbjct: 300 GSPDKAMQAAFTNQIDGWLKANSKYNKTEGKIKFTDIADCLVFISSNFSTQTSYENQTKK 359

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--G 403
            + +  ++  +  ++   L  +  E+P EA  I ++VL     R+ A +ARD  +++  G
Sbjct: 360 SITNKFIQEAMTDWLKHQLEVYFLENPDEAVKICEQVLINKRARENAAKARDTIKKQLSG 419

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            +D+A+   K  DC  +D  + EL++VEGDSA G+ KQ R  + QA++P+RGK LN  +A
Sbjct: 420 KIDLANRIPKFVDCRSKDTARRELYIVEGDSALGAVKQARDADYQAVMPVRGKTLNCLKA 479

Query: 464 RFDKMLSSQEIGTLITALGTGIGQD--------SFDINKLRYHKIIIMTDADVDGAHIRT 515
            +DK+  S+ I  L+  LG G+           +FD+N LR+ KIII TDAD DG  IRT
Sbjct: 480 SYDKIFKSEIITNLMKILGCGVEVKAKANKDLSTFDLNNLRWEKIIICTDADYDGYQIRT 539

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           L+LT  +R +P++I  GF+YI + PLY I       +   E   +  L +    +     
Sbjct: 540 LILTMLYRLVPTVIEKGFVYIAESPLYEINSKDMTYFAYTEAEKQRILADIGEQKYKIQR 599

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
               G          +     ++   +       +   +   I  +   ++       + 
Sbjct: 600 SKGLGENEPE-----MMSLTTMNPETRRLIRVMPEDAQKTQEIFELLLGDNLDGRKDYIR 654

Query: 636 SKLANRLNFI 645
                 L+ I
Sbjct: 655 DYGYKYLDDI 664



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 108/306 (35%), Gaps = 35/306 (11%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+               + ++++ +          +++        
Sbjct: 351 TSYENQTKKSITNKFIQEAMTDWLK--HQLEVYFLENPDEAVKICEQVLINKRARENAAK 408

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYP---NHDKTFIEQAVISGVFNCESDQEINVSLA 635
                K  L   ID A +I K +          +   +E     G    ++      ++ 
Sbjct: 409 ARDTIKKQLSGKIDLANRIPKFVDCRSKDTARRELYIVEGDSALGAV-KQARDADYQAVM 467

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDIL-----VKRIARGVQEQFVLEGSSIF------- 683
                 LN +    +K +   I  + +      V+  A+  ++    + +++        
Sbjct: 468 PVRGKTLNCLKASYDKIFKSEIITNLMKILGCGVEVKAKANKDLSTFDLNNLRWEKIIIC 527

Query: 684 -SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT----------------I 726
                   +I +  +   Y  + ++I  G       P   +++                +
Sbjct: 528 TDADYDGYQIRTLILTMLYRLVPTVIEKGFVYIAESPLYEINSKDMTYFAYTEAEKQRIL 587

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG +   +QR KGLGE     +  TT+NP+TR L+RV   DA +  ++F  L+GD ++
Sbjct: 588 ADIGEQKYKIQRSKGLGENEPEMMSLTTMNPETRRLIRVMPEDAQKTQEIFELLLGDNLD 647

Query: 787 PRREFI 792
            R+++I
Sbjct: 648 GRKDYI 653


>gi|110612693|gb|ABG78309.1| GyrB [uncultured bacterium]
          Length = 399

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 250/402 (62%), Positives = 310/402 (77%), Gaps = 3/402 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS  L L I+REG ++E  + +G    PL VT  A 
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSESLHLVIRREGKVHEQHYAHGEPLAPLAVT-GAA 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT++ F PS+  F+  +F+Y+ L  RLREL+FLNS V I L D+RS +       Y+
Sbjct: 60  TTTGTQIWFKPSAATFTHIEFSYEILARRLRELAFLNSGVNILLKDERSDKS--DVFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+R K  +  S   +Q  +DN+ I+LAM+WND Y EN+LCFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNRTKTAMFPSIFSMQAEKDNVGIELAMQWNDSYQENLLCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G RSALTR + +Y+E+   +KK K +  GDD REG T+VLS+K+ DP+FSSQTK+K
Sbjct: 178 THLAGFRSALTRTLNNYIEQEGFAKKAKVTTTGDDAREGLTAVLSVKVHDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VES V D L+ +L E+P  AK IV K++DA+  R+AAR+ARDLTRRKG LD
Sbjct: 238 LVSSEVKSAVESVVADKLNDFLLENPAIAKTIVGKMIDAARAREAARKARDLTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           KMLSSQE+ TLITALG GIG D +D +K+RYH+IIIMT+ADV
Sbjct: 358 KMLSSQEVATLITALGCGIGSDEYDPDKIRYHRIIIMTNADV 399


>gi|18916420|dbj|BAB85504.1| DNA gyrase subunit B [Bradyrhizobium elkanii USDA 94]
          Length = 303

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 181/305 (59%), Positives = 228/305 (74%), Gaps = 2/305 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + VTLN D S TV D+GRGIP  +HKEEG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 DAVAPLKVVGDAPGKRGTEVTFLASTETFKNIEYDFATLEHRLRELAFLNSGVHIVLSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y + +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYADAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDPR 338
           +PDP+
Sbjct: 299 VPDPK 303


>gi|148971377|gb|ABR20226.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/423 (47%), Positives = 280/423 (66%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF  K Y  SGGLHGVG SVVNALS  L L I + G I+  ++  G  +
Sbjct: 1   EVIMTVLHAGGKFEGKVYDTSGGLHGVGSSVVNALSETLFLEIHQNGLIHRQTYHKGTPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   +  GT + F P   I     F+++TL HR RE++FLN  + I L D+ + 
Sbjct: 61  APLAVFGET-DQRGTTIRFWPDMTIMETDQFSFETLAHRFREMAFLNPVLTIHLKDEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLC 275
             RE T  ++GG+++FVS+L+ +KK         +   D    ++A ++ +   +E VL 
Sbjct: 119 -LREETFHFEGGVQSFVSFLNENKKTFHDVLFFRKNMEDGSQFEVAFQYQESTENETVLG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG + ++S+++P
Sbjct: 178 FANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLSGIISVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL SS V   +ESF+++ L    EE P  AK I +K +  +  R+AAR+A
Sbjct: 236 SPQFEGQTKAKLGSSWVAGAMESFLSEVLQEKFEEDPQTAKKIAEKAVLTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +DL +RK VL+ ++LPGKLADC E DP KSEL++V GDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 KDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVVGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE++R  +K +++ E+  LITA+G G+G + F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|291529815|emb|CBK95400.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Eubacterium siraeum 70/3]
          Length = 667

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/670 (25%), Positives = 302/670 (45%), Gaps = 35/670 (5%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +YD +S++ LKG D V+ RP +  G  DG  G  H ++E+L N+IDE+ EG+   I
Sbjct: 1   MAKKNYDDNSLKQLKGPDQVRLRPGVIFGS-DGLDGCCHSVFEILSNSIDEAREGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---YKVSGGLH 121
            VT  +D S  V D GRGIP D +K E     E+    L+AGGK++  S   Y  S GL+
Sbjct: 60  IVTRFLDKSIEVQDYGRGIPIDFNKNEEKYNWELAFCTLYAGGKYDNNSGDNYSYSLGLN 119

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFLPS 178
           G+G+      + ++++       IY++ F  G              +   TGT++ + P 
Sbjct: 120 GLGLCSTQFAAEYMEVESNNGTWIYDLRFEKGYNVEKEERGFRRHQSDGTTGTKIKWKPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAF 232
            D+F+  D  ++     LR  + +N  +   L ++   E        E    Y+ GI  +
Sbjct: 180 LDVFTDIDVPFEYFDDVLRRQAVVNDGLTFVLRNEVRDEETGETHFEEHIYCYENGISDY 239

Query: 233 VSYLDRHKKPLMQSPIRIQ------GSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDG 285
           +  +        +     Q        +    + + + +        +  + N+   + G
Sbjct: 240 LKEIVGDTALTTEQVWSAQRTGKDREDKPEYKVKMKVAFVFSNKVQLIQHYHNSSWLEHG 299

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G+    +++A T QI  +++ +    K +  +   D  +    + S       + +QTK+
Sbjct: 300 GSPDKAMQAAFTNQIDGWLKANSKYNKTEGKIKFTDIADCLVFISSNFSTQTSYENQTKK 359

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK--G 403
            + +  ++  +  ++   L  +  E+P EA  I ++VL     R+ A +ARD  +++  G
Sbjct: 360 SITNKFIQEAMTDWLKHQLEVYFLENPDEAVKICEQVLINKRARENAAKARDTIKKQLSG 419

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            +D+A+   K  DC  +D  + EL++VEGDSA G+ KQ R  + QA++P+RGK LN  +A
Sbjct: 420 KIDLANRIPKFVDCRSKDTARRELYIVEGDSALGAVKQARDADYQAVMPVRGKTLNCLKA 479

Query: 464 RFDKMLSSQEIGTLITALGTGIGQD--------SFDINKLRYHKIIIMTDADVDGAHIRT 515
            +DK+  S+ I  L+  LG G+           +FD+N LR+ KIII TDAD DG  IRT
Sbjct: 480 SYDKIFKSEIITNLMKILGCGVEVKAKANKDLSTFDLNNLRWEKIIICTDADYDGYQIRT 539

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           L+LT  +R +P++I  GF+YI + PLY I       +   E   +  L +    +     
Sbjct: 540 LILTMLYRLVPTVIEKGFVYIAESPLYEINSKDMTYFAYTEAEKQRILADIGEQKYKIQR 599

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
               G          +     ++   +       +   +   I  +   ++       + 
Sbjct: 600 SKGLGENEPE-----MMSLTTMNPETRRLIRVMPEDAQKTQEIFELLLGDNLDGRKDYIR 654

Query: 636 SKLANRLNFI 645
                 L+ I
Sbjct: 655 DYGYKYLDDI 664



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 108/306 (35%), Gaps = 35/306 (11%)

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           T +  Q    I N F+               + ++++ +          +++        
Sbjct: 351 TSYENQTKKSITNKFIQEAMTDWLK--HQLEVYFLENPDEAVKICEQVLINKRARENAAK 408

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYP---NHDKTFIEQAVISGVFNCESDQEINVSLA 635
                K  L   ID A +I K +          +   +E     G    ++      ++ 
Sbjct: 409 ARDTIKKQLSGKIDLANRIPKFVDCRSKDTARRELYIVEGDSALGAV-KQARDADYQAVM 467

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDIL-----VKRIARGVQEQFVLEGSSIF------- 683
                 LN +    +K +   I  + +      V+  A+  ++    + +++        
Sbjct: 468 PVRGKTLNCLKASYDKIFKSEIITNLMKILGCGVEVKAKANKDLSTFDLNNLRWEKIIIC 527

Query: 684 -SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT----------------I 726
                   +I +  +   Y  + ++I  G       P   +++                +
Sbjct: 528 TDADYDGYQIRTLILTMLYRLVPTVIEKGFVYIAESPLYEINSKDMTYFAYTEAEKQRIL 587

Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786
             IG +   +QR KGLGE     +  TT+NP+TR L+RV   DA +  ++F  L+GD ++
Sbjct: 588 ADIGEQKYKIQRSKGLGENEPEMMSLTTMNPETRRLIRVMPEDAQKTQEIFELLLGDNLD 647

Query: 787 PRREFI 792
            R+++I
Sbjct: 648 GRKDYI 653


>gi|159146564|gb|ABW90726.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 395

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 238/397 (59%), Positives = 309/397 (77%), Gaps = 3/397 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  + L I R G+ +  ++ +G+ D PL + G     
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTE-K 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GG
Sbjct: 60  TGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFMYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           I+AFV++L+R+K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 119 IQAFVTHLNRNKTPIHEKVFHFNSEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGT 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+ALTR + SY++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 HLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VESF+ D L+ +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG LD+
Sbjct: 239 VSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDL 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 358

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           MLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 MLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 395


>gi|4589348|gb|AAD26462.1|AF136390_1 gyrase B subunit [Bacillus thuringiensis]
          Length = 404

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 199/402 (49%), Positives = 287/402 (71%), Gaps = 4/402 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+   YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G
Sbjct: 1   HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              + TGT   F P  +IF     +++DTL  R+REL+FLN ++++++ DKR  + ++  
Sbjct: 61  DT-DQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE- 118

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI+++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY +N+  FTNNI  
Sbjct: 119 FHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTDNIYSFTNNIHT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  Q
Sbjct: 179 YEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK
Sbjct: 239 TKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+++SLPGKLADCS +DP  SE+++VEGDSAGGSA+QGR R  QAILPL+GKI+NVE+
Sbjct: 299 SALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSARQGRDRHFQAILPLKGKIINVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           AR DK+LS+ E+ T+ITA+GT IG D FDI K RYHK+IIMT
Sbjct: 359 ARLDKILSNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMT 399


>gi|7407142|gb|AAF61927.1| DNA gyrase B [Klebsiella pneumoniae]
          Length = 396

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 239/399 (59%), Positives = 307/399 (76%), Gaps = 4/399 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L+L I+R+  +++  + +G+   PL  TG   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAATGET-DK 59

Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+G
Sbjct: 60  TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 118 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KL
Sbjct: 178 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+
Sbjct: 238 VSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 298 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           MLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 358 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDA 396


>gi|4894894|gb|AAD32646.1|AF136386_1 gyrase B [Photobacterium phosphoreum]
          Length = 420

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 238/422 (56%), Positives = 315/422 (74%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGK +  SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+  
Sbjct: 1   EVIMTVLHAGGKLDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            PL   G + + TGT + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R 
Sbjct: 61  APLAEVGDS-DKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER- 118

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVL 274
            E ++    Y+GGI AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V 
Sbjct: 119 EEGKQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+
Sbjct: 179 CFTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV++ VES +N+  + +L + P +AKI   K +DAS  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLKSPAKAKIDCGKNIDASRAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKG LD+A LP KLADC E+DP  SEL++VE DSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 AREMTRRKGALDLAGLPRKLADCQEKDPALSELYIVERDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLR  +         DG+HIR
Sbjct: 359 GKILNVEKARFDKMLSSQELATLITAMGCGIGRDEYNPDKLRLPQYHHHDRRRRDGSHIR 418

Query: 515 TL 516
           TL
Sbjct: 419 TL 420


>gi|33187321|gb|AAP97523.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 397

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 199/403 (49%), Positives = 276/403 (68%), Gaps = 6/403 (1%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF++ +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V
Sbjct: 1   VLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G +   TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +    
Sbjct: 61  IGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--HE 117

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           +  ++GGI  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI 
Sbjct: 118 SFHFEGGISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIK 175

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH +G R  LTR I++Y+E +  +++    + G+D REG  +V+S+K+P+P+F  
Sbjct: 176 TPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEG 235

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR+
Sbjct: 236 QTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRK 295

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  L + +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE
Sbjct: 296 KESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE 355

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           +AR DK+L S++I  +ITA G GIG+D FD++KLRYHKIIIMT
Sbjct: 356 KARLDKILKSEQIQNMITAFGCGIGED-FDLSKLRYHKIIIMT 397


>gi|27530056|dbj|BAC53883.1| DNA gyrase B subunit [Legionella hackeliae]
          Length = 290

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/292 (57%), Positives = 216/292 (73%), Gaps = 3/292 (1%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISA 95
           D  +GLHHM++EV+DN+IDE+L GY   I VT++ D S +V D+GRGIP D+HKEEG SA
Sbjct: 1   DDGTGLHHMVFEVVDNSIDEALPGYCHEINVTIHSDESISVKDDGRGIPVDIHKEEGRSA 60

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L+I+R G ++E  + NG+ 
Sbjct: 61  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLQIRRNGKVHEQHYRNGVP 120

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
           D PL VTG A N TGT+V F PS++ F+  +F+YD L  RLRELSFLNS V I L D+R+
Sbjct: 121 DAPLAVTGDA-NSTGTQVWFKPSANTFTNIEFHYDILAKRLRELSFLNSGVCIHLYDERT 179

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +    T  Y+GGI+AFV +L+R+K P+M +   +   RDNIS++LAM+WND + E + C
Sbjct: 180 QKR--DTFRYEGGIQAFVEHLNRNKTPIMPTVFTLASERDNISVELAMQWNDSFQETIFC 237

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           FTNNIPQ+DGGTHL+G R+ALTR + +Y+E    +KK K    GDD REG T
Sbjct: 238 FTNNIPQRDGGTHLAGFRAALTRTLNTYIENEGFAKKAKVVTTGDDAREGLT 289


>gi|269799090|gb|ACZ43823.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 368

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 207/370 (55%), Positives = 272/370 (73%), Gaps = 4/370 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVS
Sbjct: 1   AGHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F P
Sbjct: 61  GGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWP 119

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+
Sbjct: 120 SHETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLN 178

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R AL
Sbjct: 179 VNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGAL 238

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 239 TRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 298

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLA
Sbjct: 299 VEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLA 358

Query: 416 DCSERDPKKS 425
           DC E+DP  S
Sbjct: 359 DCQEKDPALS 368


>gi|239735445|dbj|BAH70489.1| gyrase B subunit [Cardinium endosymbiont of Tetranychus urticae red
           form A]
          Length = 462

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 225/460 (48%), Positives = 307/460 (66%), Gaps = 9/460 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS+ L + + R G IY+  +  GI   P+   G   +  GT V F P 
Sbjct: 1   GLHGVGVSCVNALSAHLAVTVYRNGKIYKQEYAQGIPQYPVKEVG-TTDLRGTTVHFTPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
           S IF+   +N  T+ +RL+EL++LN  +++ L D+R  +    P   T   +GG+  FV+
Sbjct: 60  SSIFTTTVYNLHTIVNRLQELAYLNVGLKMQLEDRRERDEAGNPFGQTFHSQGGLLEFVA 119

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD  K  +M +PI ++G ++N+ + +AM +N GY E V+ + NNI   +GG H++G R 
Sbjct: 120 HLDSSKVSIMPAPILVEGEKNNVVVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFRR 179

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY +KS   +K K  +IGDD REG T+V+S+K+ +P+F  QTK KL ++EV+ 
Sbjct: 180 ALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQG 239

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES V + L  +LEEHP EAK+I+ KV+ A+  R AAR+AR++ +RK VL   SLPGKL
Sbjct: 240 AVESCVGEVLHYYLEEHPKEAKLIINKVIVAAQARQAARKAREMVQRKNVLMSNSLPGKL 299

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCSERDP   ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  K+  ++++
Sbjct: 300 ADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQVYKIYDNEQV 359

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +ITALG  +G D  D     +KLRYHKI+IMTDADVDG+HIRTL+LTFFFR M  +I 
Sbjct: 360 RNMITALGVTMGTDGNDQAIHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYMRDIIE 419

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            G LYI  PPLY + R K  QY   +   E  +   SL +
Sbjct: 420 KGHLYIASPPLYLVKRDKEEQYCWTDSEKEASVTQFSLKD 459


>gi|325287883|ref|YP_004263673.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Cellulophaga lytica DSM 7489]
 gi|324323337|gb|ADY30802.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Cellulophaga lytica DSM 7489]
          Length = 618

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/666 (28%), Positives = 303/666 (45%), Gaps = 68/666 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MSDN +   Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN IDE 
Sbjct: 1   MSDNTK---YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNCIDEF 57

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I + +  D    V D GRGIP            +V+ ++++ GGK++ K++K 
Sbjct: 58  VMGAGKTIEINI-KDNLVKVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSKAFKK 108

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS++ K+   REG      F  G L         +    GT+V+F 
Sbjct: 109 SVGLNGVGTKAVNALSNFFKVESSREGQSKWAEFSQGNLVAEEGPV-DSSKRKGTKVSFT 167

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   IF    +  + +   L+   +LN  + I    ++         F + G++  +   
Sbjct: 168 PDETIFKNYKYRNEYVVRMLKNYVYLNPGLTIVFNGEK--------YFSENGLKDLLED- 218

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + + + L+   I ++G    I+I         Y E    F N      GGTH S  R A+
Sbjct: 219 NNNVEDLLYPIIHLKGDDIEIAIT---HSKTQYSEEYQSFVNGQHTTQGGTHQSAFREAI 275

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + I  +  K++ +          D R+   S +SIK+ +P F SQTK KL S+++    
Sbjct: 276 VKTIRDFYGKNYEAS---------DIRKSIISAVSIKVMEPVFESQTKTKLGSTDMGGNY 326

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRR 401
              R+ +  FV   L  +L ++P  A+ + +K++ A   R         A  RA+  +  
Sbjct: 327 PTVRTYINDFVGKYLDNYLHKNPETAEALQRKIIQAERERKDLSGIRKLARDRAKKASLH 386

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
              L    +   L D  +    +S LF+ EGDSA GS  + R    QA+  LRGK LN  
Sbjct: 387 NKKLRDCRV--HLGDLKKDRRLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSY 444

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
                 +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR LL+TFF
Sbjct: 445 GMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIATDADVDGMHIRLLLITFF 499

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
            +  P LI    LYI++ PL+ +   K   Y    E   + +   +   EI  F    G 
Sbjct: 500 LQFFPELIKENHLYILQTPLFRVRNKKQTYYCYSPEEKAEAIEKLTGKPEITRF-KGLGE 558

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS ++ ++FI D ++++ ++ D         IEQ +    +  ++  +    +   L   
Sbjct: 559 ISPDEFKHFIGDDIRLEPVMLD-----KAMSIEQLL--SFYMGKNTPDRQKFIIENLKVE 611

Query: 642 LNFIAE 647
           L+ I +
Sbjct: 612 LDLIED 617


>gi|307939334|gb|ADN95858.1| DNA gyrase B [Hymenobacter sp. VUG-A106]
          Length = 438

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 212/438 (48%), Positives = 295/438 (67%), Gaps = 19/438 (4%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGGKF++ SYKV GGLHGVGV  VNALS  LK+ ++R G +Y+  +  GI   
Sbjct: 2   IIMTVLHAGGKFDKDSYKVYGGLHGVGVRCVNALSQDLKVTVRRNGKMYQQEYKIGIPQY 61

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----- 212
           P+   G   ++ GT+V FLP + IFS   + Y T+  RLRELS+LNS ++I+L D     
Sbjct: 62  PVKEIG-TTDEHGTQVEFLPDTSIFSEHIYKYATIAGRLRELSYLNSGIRITLTDRREPG 120

Query: 213 KRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           ++  E R    +  GG+  FV Y     +  LM +PI +   + +  +++A+++ND Y E
Sbjct: 121 EKDAEFRGEEFYSTGGLAEFVQYLDGTERHALMPAPIHVINEKGSTPVEVALQYNDSYQE 180

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  + NNI   +GGTH++G RSALTR + +Y +KS   +K K  + G+D REG T+V+S
Sbjct: 181 NIFSYVNNINTHEGGTHVAGFRSALTRTLKAYADKSGKLEKAKVEISGEDFREGLTAVIS 240

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++EV   V + V + L+ +LEE+P EA IIV+KV+ A+  R A
Sbjct: 241 VKVQEPQFEGQTKAKLGNNEVNGAVNTAVGEILAQYLEENPKEAGIIVEKVILAAKARIA 300

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A++AR++ +RK VL   SLPGKLADCSE DP+  E++LVEGDSAGG+AKQGR+R  QAIL
Sbjct: 301 AKKAREMVQRKSVLGSTSLPGKLADCSESDPEICEIYLVEGDSAGGTAKQGRNRAFQAIL 360

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF------------DINKLRYHK 499
           PLRGKILNVE+A+  ++L ++EI  +ITALG   G  +             +I KLRYHK
Sbjct: 361 PLRGKILNVEKAQEHRILENEEIRNMITALGVSFGVAADPENGIEADSKALNIKKLRYHK 420

Query: 500 IIIMTDADVDGAHIRTLL 517
           +IIMTDADV G+HIRTLL
Sbjct: 421 VIIMTDADVXGSHIRTLL 438


>gi|23978259|dbj|BAC21119.1| DNA gyrase B subunit [Xenococcus sp. PCC 7307]
          Length = 395

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 174/394 (44%), Positives = 255/394 (64%), Gaps = 6/394 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L G+   I V +N DGS TV+D+GRGIPT +H + G SA 
Sbjct: 2   GPKGLHHLVYEVVDNSIDEALAGFCTHIEVDINADGSITVTDDGRGIPTGIHSKTGKSAL 61

Query: 97  EVIMTRLHA--GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           E +MT LHA          YKVSGGLHGVGVSVVNALS  +++ + R+  +++  +  G 
Sbjct: 62  ETVMTVLHAGGKFGGAGSGYKVSGGLHGVGVSVVNALSKLVEVTVWRDRKVHQQRYEKGK 121

Query: 155 LDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLI 211
               LVV       N TGT V F+P + IF+    F Y+ L  RL+EL++LN+ ++I+  
Sbjct: 122 PQGSLVVEPNKEQPNRTGTAVHFVPDNTIFTETTVFEYEVLAKRLKELAYLNAGIKITFS 181

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYH 270
           D+R PE R+    Y+GGI+ +V Y+   K PL Q  I +   ++ +++++A++W  D Y 
Sbjct: 182 DRREPEIRQDVFCYEGGIKEYVEYMTLEKDPLHQDIIYVNKEKNGVTVEVALQWCIDAYS 241

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           +N+L F NNI   DGGTHL GL++ LTR + S+  K    K ++ ++ G++ REG T V+
Sbjct: 242 DNLLGFANNIRTIDGGTHLEGLKTVLTRTMNSFARKRNKIKDNESNLGGENVREGLTGVV 301

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE +      I++K + +    +
Sbjct: 302 SVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLNDYLEFNLSVGDAIIEKAIQSFKAAE 361

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           AAR AR+L RRK VL+ + LPGKLADCS RDP++
Sbjct: 362 AARHARELVRRKSVLESSPLPGKLADCSTRDPEE 395


>gi|295979557|dbj|BAJ07451.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 313

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/313 (61%), Positives = 235/313 (75%), Gaps = 7/313 (2%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+AD++TVTLN DGS TV+DNGRGIPT +H EEGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADLVTVTLNEDGSVTVTDNGRGIPTAIHAEEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+L + REG  + + F  G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELVVYREGKKHTVRFERG 120

Query: 154 ILDNPLVVTGSAGND-------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                L V G A          TGTEVTF PS   FS  DF+  TL+HRLREL+FLNS V
Sbjct: 121 ETVRSLAVVGEAPMREDKGRLLTGTEVTFYPSVTTFSHIDFDLKTLEHRLRELAFLNSGV 180

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
            I L D R  EP EI + Y+GG+EAFV +LD+ K P+++  I I+G +D I +DLA+ WN
Sbjct: 181 VIKLSDHRGAEPVEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGIELDLALWWN 240

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D YHE +LCFTNNIPQ+DGGTHLS  R++LTR + SY+E S  +KK+K +  G+D REG 
Sbjct: 241 DSYHETMLCFTNNIPQRDGGTHLSAFRASLTRVMGSYIESSGLAKKEKVAPTGEDAREGL 300

Query: 327 TSVLSIKMPDPRF 339
           T VLS+K+PDP+F
Sbjct: 301 TCVLSVKVPDPKF 313


>gi|149278658|ref|ZP_01884794.1| DNA topoisomerase IV subunit B [Pedobacter sp. BAL39]
 gi|149230653|gb|EDM36036.1| DNA topoisomerase IV subunit B [Pedobacter sp. BAL39]
          Length = 642

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 169/656 (25%), Positives = 288/656 (43%), Gaps = 60/656 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +   +Y+ DSI+ L   + ++ RP MYIG     S    G++ ++ E++DN+IDE + G 
Sbjct: 1   MAEPNYNEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLLKEIVDNSIDEFVMGS 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSG 118
              I +T+  D    V D GRGIP             VI     ++ GGK++  +++ S 
Sbjct: 61  GRTIEITV-SDQKVNVRDYGRGIPLGK----------VIDCVSKINTGGKYDSNAFQKSV 109

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG   VNALS+   ++  R+    ++ F  G +     +        GT +TF P 
Sbjct: 110 GLNGVGTKAVNALSTAFSVQSYRDNKTKKVEFSKGEITIDNPII-DTTQRNGTAITFYPD 168

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF    +  D ++  +    FLN+ + I+   ++           + G+   ++    
Sbjct: 169 ESIFRNYHYIPDFVESMIWNYVFLNAGLTINFNGQK--------YLSERGLYDLLTKHVG 220

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +       I ++G      I++AM     Y E+   F N      GGTH +  R A+ +
Sbjct: 221 AEVMRYP-IIHLKGHD----IEIAMTHGQQYGEDYHSFVNGQNTTQGGTHQAAFREAVVK 275

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SE 351
            I  + +K F +          D R    + +S+++ +P F SQTK KL S         
Sbjct: 276 TIREFYKKEFDAS---------DIRGSIVAAISVRVQEPVFESQTKTKLGSQNMGPEGPS 326

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA 408
           VR+ +  FV   L  +L +H   A  ++K++L +   R      +   +   +K  L   
Sbjct: 327 VRTFINDFVKKELDDYLHKHADVADALLKRILQSERERKDIAGIKKLANDRAKKASLHNK 386

Query: 409 --SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
                    + +     ++ LF+ EGDSA GS  + R  + QA+  L+GK LN       
Sbjct: 387 KLRDCKVHFNSTHEKRYETTLFITEGDSASGSITKSRDVDCQAVFSLKGKPLNCYELTKK 446

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L  AL    G     ++ L Y+ I+I TDADVDG HIR L++TFF +  P
Sbjct: 447 VVYENEEFNLLQHALNIEDG-----LDGLHYNNIVIATDADVDGMHIRLLMMTFFLQFFP 501

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            L+ +G +YI++ PL+ +   K   Y   +E  +  +       EI  F    G IS ++
Sbjct: 502 DLVRSGHVYILQTPLFRVRNKKETIYCYSDEERKAAIAKLGSKPEITRF-KGLGEISPDE 560

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
              FI   +++D +I        K+ +E  +     + +     N+ +       L
Sbjct: 561 FGLFIGKDIRLDPVI--LKDQTIKSLLEYYMGKNTPDRQQHIIRNLRIEKDTIEEL 614


>gi|148793386|gb|ABR12757.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 396

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 234/398 (58%), Positives = 308/398 (77%), Gaps = 4/398 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G + + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGDS-DKTGT 59

Query: 172 EVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++    Y+GGI 
Sbjct: 60  RLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHFTYEGGIR 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+DGGTHL
Sbjct: 119 AFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRKG LD+A 
Sbjct: 239 SEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRKGALDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           SSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 SSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 396


>gi|51246132|ref|YP_066016.1| DNA topoisomerase IV subunit B [Desulfotalea psychrophila LSv54]
 gi|50877169|emb|CAG37009.1| probable topoisomerase IV, subunit B [Desulfotalea psychrophila
           LSv54]
          Length = 613

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/617 (26%), Positives = 281/617 (45%), Gaps = 58/617 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M+     S+YD   I+ L  L+ ++KRP MYIG     S    G++ ++ EV+DNA+DE 
Sbjct: 1   MTST--PSNYDESKIKTLSSLEHIRKRPGMYIGRLGNGSHQDDGIYILLKEVVDNAVDEF 58

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I V ++ +G   V D GRGIP        +    VI T    G K+N   ++ 
Sbjct: 59  IMGAGKKIDVAVSEEGRVRVRDYGRGIPLGKL----VDCVSVINT----GAKYNTDVFQF 110

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS    +   R+G     +F  G L +     G +    GT + FL
Sbjct: 111 SVGLNGVGTKAVNALSDEFTVTAYRDGKYASATFSQGKLQH--KEEGESEEKNGTLINFL 168

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS D+F    ++ D +  R+   ++LN+ +++               + K G+   ++  
Sbjct: 169 PSRDMFPEFSYDSDFVSRRMWRYAYLNAGLKLYFNK--------SLFYSKEGLRDLLAKE 220

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                     PI  +      +++ A    D ++++   F N     +GGTHLS  R  +
Sbjct: 221 LSDSNLY--EPIYYKDE----TLEFAFAHTDSFNDSYYTFVNGTYTSEGGTHLSAFREGV 274

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + +  +  K           +  D R+G    L++K+ +P F SQTK KL ++EVRS +
Sbjct: 275 LKGVNEFSGK---------KFVNTDVRDGIVGTLAVKVKEPVFESQTKNKLGNTEVRSWI 325

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--------VRDAARRARDLTRRKGVLDIA 408
            + V + +S+ L +H   A+I++ K+              ++A  RA+ ++ +   L   
Sbjct: 326 VNKVREAVSSELYKHSDTAEILLDKIQRNEKVRKELQSVRKEAKARAKKVSLKIPQLKDC 385

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
                  +      +++ +F+ EG SA GS    R    QA+  ++GK LNV   +   +
Sbjct: 386 KYHPAK-NAPSAAGRENMVFITEGQSAAGSIVSSRDPLIQAVFSMKGKPLNVLGHQLATL 444

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             ++E+  L+  L          I+ LR+ K+I+ TDADVDG HIR LLLTFF      L
Sbjct: 445 YKNEEMYALMRTLNI-----EHSISDLRFDKVIMATDADVDGLHIRNLLLTFFLHYFEPL 499

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD-----SKGVIS 583
           +  G +YI++ P++ +       Y   E+             + +L  +       G IS
Sbjct: 500 VKLGHVYILETPIFRVRNKAETIYCYSEKEKNAAQKKLGGQGKKKLNVEMTRFKGLGEIS 559

Query: 584 KNDLRNFIDDALKIDKL 600
             + + FI D +++  +
Sbjct: 560 PKEFKQFIGDDIRLKSV 576


>gi|237721891|ref|ZP_04552372.1| DNA topoisomerase IV subunit B [Bacteroides sp. 2_2_4]
 gi|229448760|gb|EEO54551.1| DNA topoisomerase IV subunit B [Bacteroides sp. 2_2_4]
          Length = 625

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/655 (27%), Positives = 294/655 (44%), Gaps = 58/655 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLE 58
           DN     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 10  DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I +T+  +   +V D GRGIP        I A  +    L+ GGK++ K++K S 
Sbjct: 70  QAGKKIEITVEENLRVSVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFKKSV 121

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  ++R  R+G +   +F  G L      T +   + GT + F P 
Sbjct: 122 GLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTD--ETQNTEEENGTYIFFEPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I     R           + G+   ++    
Sbjct: 180 NTLFLNYSFKPEFIETMLRNYTYLNTGLAIIYNGHRI--------LSRNGLVDLLNDNMT 231

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   I ++G      I++A      Y E    F N      GGTH S  +  + R
Sbjct: 232 A--TGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 285

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------ 352
            I  +  K+             D R G  + +++ + +P F SQTK KL S+ +      
Sbjct: 286 TIKEFFNKNMDYT---------DIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMIPGGVT 336

Query: 353 -RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTRRKGVLDIASL 410
               V  F+   +  +L ++   A+ I +K+ ++   R A     +    R    ++ + 
Sbjct: 337 VNKYVGDFIKQEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARERAKKANLHNR 396

Query: 411 PGKLADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +       DP      + S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 KLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 456

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 457 KKVVYENEEFNLLQAALNIEDG-----LDGLRYNKVIVATDADVDGMHIRLLLITFFLQF 511

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   EE   + +   S + EI  F    G IS 
Sbjct: 512 FPDLIKKGHVYILQTPLFRVRNKKKTIYCYSEEERVNAINELSPNPEITRF-KGLGEISP 570

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 571 DEFKHFIGKDMRLEQVSLR-KTDAVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 624


>gi|255533358|ref|YP_003093730.1| DNA topoisomerase IV subunit B [Pedobacter heparinus DSM 2366]
 gi|255346342|gb|ACU05668.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Pedobacter heparinus DSM 2366]
          Length = 633

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/661 (25%), Positives = 286/661 (43%), Gaps = 60/661 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +   +Y+ DSI+ L   + ++ RP MYIG     S    G++ ++ E++DN+IDE + G 
Sbjct: 1   MAEPNYNEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLLKEIVDNSIDEFVMGS 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSG 118
              I +T+  D    V D GRGIP             VI     ++ GGK++ K+++ S 
Sbjct: 61  GRTIEITV-SDQKVNVRDYGRGIPLGK----------VIDCVSKINTGGKYDSKAFQKSV 109

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG   VNALS+   ++  R+    ++ F  G +     +        GT +TF P 
Sbjct: 110 GLNGVGTKAVNALSTNFVVQSYRDNKTKKVEFSKGEIVLDNAII-DTTQRNGTAITFYPD 168

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF    +  D ++  +    FLN+ + I+   ++         F + G+   +     
Sbjct: 169 ETIFRNYHYIPDFVESMIWNYVFLNAGLTINFNGQK--------YFSERGLYDLLHKHAD 220

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +         +        I++AM     Y E+   F N      GGTH +  R A+ +
Sbjct: 221 VESVRYPIIHLVGSD-----IEIAMTHGQQYGEDYHSFVNGQHTTQGGTHQAAFREAVVK 275

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SE 351
            I  + +K + +          D R    + +S+++ +P F SQTK KL S         
Sbjct: 276 TIREFYKKEYDAS---------DIRSSIIAAISVRVQEPVFESQTKTKLGSQNMGPDGPS 326

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA 408
           VR+ +  FV   L  +L +H   A  ++K++L +   R      +   +   +K  L   
Sbjct: 327 VRTFINDFVKKELDDYLHKHSDVADALLKRILQSERERKDIAGIKKLANDRAKKASLHNK 386

Query: 409 --SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
                    + +     ++ LF+ EGDSA GS  + R  + QA+  L+GK LN       
Sbjct: 387 KLRDCKIHFNSTHDKRYETTLFITEGDSASGSITKSRDVDCQAVFSLKGKPLNCYELTKK 446

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L  AL    G     ++ L Y+ I+I TDADVDG HIR L++TFF +  P
Sbjct: 447 VVYENEEFNLLQHALNIEDG-----LDGLHYNNIVIATDADVDGMHIRLLMMTFFLQFFP 501

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            L+  G +YI++ PL+ +   K   Y   ++  +  +       EI  F    G IS ++
Sbjct: 502 DLVRAGHVYILQTPLFRVRNKKETIYCYSDDERKKAIEKLGNKPEITRF-KGLGEISPDE 560

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
              FI   +++D +I        K  +E  +     + +     N+ +     +     A
Sbjct: 561 FGLFIGKDIRLDPVI--LKDQTIKNLLEYYMGKNTPDRQQHIIRNLRIEKDEVSEDEIKA 618

Query: 647 E 647
           E
Sbjct: 619 E 619


>gi|190148858|gb|ACE63404.1| DNA gyrase B subunit [Pseudonocardia saturnea]
          Length = 433

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 208/436 (47%), Positives = 283/436 (64%), Gaps = 18/436 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SY VSGGLHGVGVSVVNALS+ L + I  +G ++   +   +  
Sbjct: 1   EVIMTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTALDVEIHTDGFVWRQHYARSVP- 59

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G     TG+ VT+    DIF    +N +T++ RL+E++FLN  + I L D+R+ 
Sbjct: 60  GPLRK-GEPTRQTGSTVTYWADPDIFETVVYNIETIRRRLQEMAFLNKGLTIILRDERNG 118

Query: 217 ---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +E T  Y  G+E FVSYL++ K P+ +  +   G     ++++
Sbjct: 119 DTSAAEEPDAEGYVGKVKEYTFCYPNGLEDFVSYLNKSKDPIHKKLVSFSGEAAGHALEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y ++    K    ++ G+D
Sbjct: 179 AMQWNSGYTESVHTFANTINTHEGGTHEEGFRSALTTTVNRYAKEKKLLKDKDPALSGED 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P EAK IV K
Sbjct: 239 IREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLSDWFERNPTEAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVQSAQARAAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILP+RGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHK++
Sbjct: 359 GRDSMFQAILPIRGKIINVEKARIDRVLKNTEVRAIITALGTGI-HDEFDLAKLRYHKVV 417

Query: 502 IMTDADVDGAHIRTLL 517
           +MTDADVDG+HIRTLL
Sbjct: 418 LMTDADVDGSHIRTLL 433


>gi|295979551|dbj|BAJ07448.1| DNA gyrase subunit B [Brevundimonas diminuta]
 gi|295979555|dbj|BAJ07450.1| DNA gyrase subunit B [Brevundimonas diminuta]
 gi|295979559|dbj|BAJ07452.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 313

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/313 (61%), Positives = 235/313 (75%), Gaps = 7/313 (2%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+AD++TVTLN DGS TV+DNGRGIPT +H EEG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADLVTVTLNEDGSVTVTDNGRGIPTAIHAEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+L I REG  + + F  G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELVIYREGKKHSVRFERG 120

Query: 154 ILDNPLVVTGSAGND-------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                L V G A          TGTEVTF PS   FS  DF+  TL+HRLREL+FLNS V
Sbjct: 121 ETVRALAVIGDAPMREDKGRLLTGTEVTFYPSVTTFSHIDFDLKTLEHRLRELAFLNSGV 180

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
            I L D R  EP EI + Y+GG+EAFV +LD+ K P+++  I I+G +D I +DLA+ WN
Sbjct: 181 VIKLSDHRGAEPVEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGIELDLALWWN 240

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D YHE +LCFTNNIPQ+DGGTHLS  R++LTR + SY+E S  +KK+K +  G+D REG 
Sbjct: 241 DSYHETMLCFTNNIPQRDGGTHLSAFRASLTRVMGSYIESSGLAKKEKVAPTGEDAREGL 300

Query: 327 TSVLSIKMPDPRF 339
           T VLS+K+PDP+F
Sbjct: 301 TCVLSVKVPDPKF 313


>gi|124002042|ref|ZP_01686896.1| topoisomerase IV subunit B [Microscilla marina ATCC 23134]
 gi|123992508|gb|EAY31853.1| topoisomerase IV subunit B [Microscilla marina ATCC 23134]
          Length = 621

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 175/628 (27%), Positives = 278/628 (44%), Gaps = 59/628 (9%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           S Y  D+I+ L   + ++KRP MYIG     S    G++ ++ E+LDN+IDE + G+   
Sbjct: 2   SKYTEDNIKTLDWREHIRKRPGMYIGKLGNGSAQDDGIYVLVKEILDNSIDEHMMGFGKK 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLH 121
           I + L  +    V D GRGIP             VI     ++ GGK++  +++ S GL+
Sbjct: 62  IEIKL-EEKRVVVRDYGRGIPLGK----------VIDCVSKINTGGKYDSDAFQKSVGLN 110

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG   VNALS++ K++  R+G      F  G++ N            GT   F P +D+
Sbjct: 111 GVGTKAVNALSAYFKVQSFRDGETKVAEFNQGVITND-EPIAKTSERNGTLTIFEPDNDV 169

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    +N D L+  +   +FLN+ ++I    K          F + G+   + +      
Sbjct: 170 FVNYKYNPDFLEDLIWNYAFLNAGLKIKFNGKE--------YFSENGLLDLLRFKTNKTN 221

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
                 I ++G+     I++A+  ++ Y E    F N      GGTHLS  R ++ +   
Sbjct: 222 IRYP-IIHLKGND----IEVALTHSNQYGEEYYSFVNGQNTTQGGTHLSAFRESVVKVAR 276

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS------- 354
            +  K              D R    + +SI++ +P F SQTK KL S +V         
Sbjct: 277 DFYGK---------DFDSADVRASIVATVSIRVQEPVFESQTKTKLGSQQVAPGGLSIRA 327

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG-- 412
            V  F+   L  +L  +P  AK I  ++L +   R      + L  +K            
Sbjct: 328 FVNDFIKTELDNYLHRNPEVAKAIEARILQSEKERKEISVIKKLANQKARKANLHNKKLR 387

Query: 413 ----KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
                  D  + +  ++ LF+ EGDSA GS  + R  + QA+  LRGK LN  +     +
Sbjct: 388 DCRVHFIDQKKDNRYETTLFITEGDSASGSLTKARDVQTQAVFSLRGKPLNCYKLTKKVV 447

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             ++E   L  AL    G     I  LRY+KI+I TDADVDG HIR LL+TFF +  P +
Sbjct: 448 YENEEFNLLQHALDIEDG-----IENLRYNKIVIATDADVDGMHIRLLLMTFFLQFFPDV 502

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           +  G LY+++ PL+ +   K   Y   E+  +  + +     EI  F    G IS ++  
Sbjct: 503 VKQGHLYVLETPLFRVRNKKKTVYCYSEKEKQRAIKSLGSKPEITRF-KGLGEISPDEFG 561

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQA 616
            FI   ++ + +      + D       
Sbjct: 562 QFIGSNMRAEPVSLRSETSIDDVLAYYM 589


>gi|110638017|ref|YP_678224.1| DNA topoisomerase IV subunit B [Cytophaga hutchinsonii ATCC 33406]
 gi|110280698|gb|ABG58884.1| DNA topoisomerase IV, subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 628

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 181/613 (29%), Positives = 279/613 (45%), Gaps = 63/613 (10%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADIIT 65
           Y  DSI+ L   + ++ RP MYIG     S    G++ ++ E++DN+IDE + G    I 
Sbjct: 8   YTEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLVKEIIDNSIDEHMMGNGKQID 67

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLHGV 123
           + +  D    V D GRGIP             VI     ++ GGK++  +++ S GL+GV
Sbjct: 68  IVI-TDKKVEVRDYGRGIPLGK----------VIDCVSKINTGGKYDSGAFQKSVGLNGV 116

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G   VNALS++ K++  R+G      F  G L      T S     GT +TF P + IF 
Sbjct: 117 GTKAVNALSAYFKVQSIRDGKTKVAEFEKGELVKDHKET-STTEKNGTMITFTPDNTIFK 175

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F  + L+ +L   +FLN+ + I+   K+         + + G+   +      +   
Sbjct: 176 NFYFIPEFLEEQLWNYAFLNAGLTINYNGKK--------YYSENGLLDLLKRKADVESIR 227

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I ++G+     I++ +   + Y E    F N      GGTHL+  R A+ + +  Y
Sbjct: 228 YP-FIHLKGND----IEICLTHGEQYGEEYYSFVNGQYTTQGGTHLAAFREAVVKTVREY 282

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SEVRSVV 356
            +K F +          D R      ++I++ +P F SQTK KL S         VR+ V
Sbjct: 283 YKKDFDAS---------DVRSSIIGAIAIRVQEPVFESQTKTKLGSQNVAHEGPTVRNFV 333

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGVLDIA 408
             FV   L  +L ++   A  ++K++L +   R         A  RA+        L   
Sbjct: 334 NDFVKRELDNYLHQNSTAADALLKRILQSERERKDIAGIKKLANDRAKKANLHNKKLRDC 393

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
                L D       +S LF+ EGDSA GS  + R  E QA+  LRGK LN        +
Sbjct: 394 RF--HLDDEKSDKRYESTLFITEGDSASGSITKSRKVETQAVFSLRGKPLNCFGLTKKIV 451

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             ++E   L  AL    G     +  LRY  ++I TDADVDG HIR LL+TFF +  P L
Sbjct: 452 YENEEFNLLQHALNIEDG-----LEGLRYKNVVIATDADVDGMHIRLLLMTFFLQFFPDL 506

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           + NG L+I+  PL+ +   K   Y   EE  +  +    +  EI  F    G IS ++  
Sbjct: 507 VRNGHLFILDTPLFRVRNKKETIYCYSEEEKQKAMAKLGVKPEITRF-KGLGEISPDEFG 565

Query: 589 NFIDDALKIDKLI 601
           +FI + +++D +I
Sbjct: 566 HFIGENIRLDPII 578


>gi|312892466|ref|ZP_07751959.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Mucilaginibacter paludis DSM 18603]
 gi|311295046|gb|EFQ72222.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Mucilaginibacter paludis DSM 18603]
          Length = 631

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 173/619 (27%), Positives = 272/619 (43%), Gaps = 58/619 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M++N+   +YD DSI+ L   + ++ RP MYIG     S    G++ ++ E++DN+IDE 
Sbjct: 1   MAENV---NYDNDSIRSLDWKEHIRLRPGMYIGKLGDGSAYDDGIYVLLKEIVDNSIDEF 57

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSY 114
           + G    I + +  D   +V D GRGIP             VI     ++ GGK++ K++
Sbjct: 58  VMGAGRSIEINM-SDQKVSVRDYGRGIPLGK----------VIDCVSKINTGGKYDSKAF 106

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + S GL+GVG   VNALS+   ++  R+G      F  G L              GT + 
Sbjct: 107 QKSVGLNGVGTKAVNALSNSFTVQSYRDGRTKIAEFAKGELVRE-EPEKETTQRNGTAIN 165

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FLP   IF    F  + + + +    +LNS + I+   ++         F + G+   + 
Sbjct: 166 FLPDDTIFRHYRFIPEFVDNMIWNYVYLNSGLTINFNGQK--------FFSERGLYDLLV 217

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
                        I ++G      I+LA+     Y E    F N      GGTH +  R 
Sbjct: 218 KNTDSNALRYP-IIHLKGED----IELALTHGQAYGEEYYSFVNGQHTTQGGTHQAAFRE 272

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS----- 349
           A+ + I  + EK      DK+     D R      ++IK+ +P F SQTK KL S     
Sbjct: 273 AIGKTIKEFFEK------DKKDFEPVDIRASIVGAIAIKVQEPVFESQTKTKLGSQNIGP 326

Query: 350 --SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGV 404
               VR+ +  FV   L  +L  +P  A  +  +++ +   R      +   +   +K  
Sbjct: 327 EGPTVRTFINDFVKRELDNFLHRNPATADALKARIMQSERERKDIAGIKKLANERAKKAS 386

Query: 405 LDIA--SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           L            D      + + LF+ EGDSA GS  + R    QA+  L+GK LN   
Sbjct: 387 LHNKKLRDCKIHFDDQHERRQDTTLFITEGDSASGSITKSRDVMTQAVFSLKGKPLNCFG 446

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
                +  ++E   L  AL    G     I+ +RY+ I+I TDADVDG HIR LL+TFF 
Sbjct: 447 LTKKVVYENEEFNLLQHALNIEDG-----IDGIRYNNIVIATDADVDGMHIRLLLMTFFL 501

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           +  P L+  G + I++ PL+ +   K   Y   +E   + +       EI  F    G I
Sbjct: 502 QFFPDLVKAGHVSILQTPLFRVRNKKETIYCYSDEERRNAIEKLGNKPEITRF-KGLGEI 560

Query: 583 SKNDLRNFIDDALKIDKLI 601
           S ++   FI   +++D + 
Sbjct: 561 SPDEFGLFIGKDIRLDPVY 579


>gi|148762383|dbj|BAF63893.1| DNA topoisomerase IV subunit B [Halobacillus yeomjeoni]
          Length = 407

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 187/406 (46%), Positives = 264/406 (65%), Gaps = 9/406 (2%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH+++E++DNA+DE+L G+   +TVTL+ DGS +V D  RG+PT +H + G    EVI
Sbjct: 6   GLHHLVHEIVDNAVDEALAGFGQQMTVTLHKDGSVSVEDEARGMPTGMH-KTGKPTPEVI 64

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNP 158
           +T LHAGGKF Q  YK SGGLHGVG SVVNALS WL+++I R+G  Y   F N G+    
Sbjct: 65  LTVLHAGGKFGQGGYKSSGGLHGVGASVVNALSEWLEVKICRDGERYYQRFENGGVPVTS 124

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G A   +GT + F P   IFSV  FN++TL  RLRE +FL    +I+L+D+R  E 
Sbjct: 125 LEHKG-ATRKSGTTIRFKPDPTIFSVTKFNFETLSERLREAAFLLKGFRINLVDER-KER 182

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
            E    Y  GIE+FV+YL+  K  L    +  +GS   I  D+A ++NDG  E++L F N
Sbjct: 183 VEEVYQYDDGIESFVAYLNEEKDTLHP-VVSFEGSHSEIEADIAFQFNDGLAESILSFVN 241

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP- 337
           N+  KDGGTH SG ++A+TR    Y  ++   K+  +++ G+D REGFT+++S+++P+  
Sbjct: 242 NVRTKDGGTHESGAKTAITRVFNDYARRAQMLKEKDKNLEGNDIREGFTAIISVRIPEEL 301

Query: 338 -RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
            +F  QTK KL +SE RS V++ V + LS +LEE+P  A +++KK + A   R+AAR+AR
Sbjct: 302 LQFEGQTKSKLGTSEARSAVDAVVAEQLSYFLEENPDVASMLIKKAIKAKEAREAARKAR 361

Query: 397 D--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           +   + +K       L GKL     R+P+K+EL+LVEGDSAGGSAK
Sbjct: 362 EDARSGKKKKRKDTLLSGKLTPAQSRNPQKNELYLVEGDSAGGSAK 407


>gi|269799082|gb|ACZ43819.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 370

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/372 (56%), Positives = 275/372 (73%), Gaps = 4/372 (1%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSG
Sbjct: 1   GHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS
Sbjct: 61  GLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ 
Sbjct: 120 HETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNV 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 239 RTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 298

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLAD
Sbjct: 299 EQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLAD 358

Query: 417 CSERDPKKSELF 428
           C E+DP  SEL+
Sbjct: 359 CQEKDPALSELY 370


>gi|111380384|gb|ABH09625.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 393

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 233/395 (58%), Positives = 307/395 (77%), Gaps = 3/395 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G   ++
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DE 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     Y+GG
Sbjct: 60  TGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFMYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           I+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGT
Sbjct: 119 IQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGT 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 HLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+
Sbjct: 239 VSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDL 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 AGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 358

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           MLSSQE+ TLITA+G GIG+D ++ +KLRYH III
Sbjct: 359 MLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIII 393


>gi|153807001|ref|ZP_01959669.1| hypothetical protein BACCAC_01278 [Bacteroides caccae ATCC 43185]
 gi|149130121|gb|EDM21331.1| hypothetical protein BACCAC_01278 [Bacteroides caccae ATCC 43185]
          Length = 625

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 181/655 (27%), Positives = 293/655 (44%), Gaps = 58/655 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLE 58
           DN     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 10  DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I +T+  +   +V D GRGIP        I A  +    L+ GGK++ K++K S 
Sbjct: 70  QAGKKIEITVEENLRVSVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFKKSV 121

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  ++R  R+G +   +F  G L      T +   D GT + F P 
Sbjct: 122 GLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGTLLTD--ETQTTEEDNGTYIFFEPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I     R           + G+   ++    
Sbjct: 180 NTLFLNYCFKPEFIETMLRNYTYLNTGLAIIYNGHRI--------LSRNGLVDLLNDNMT 231

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   I ++G      I++A      Y E    F N      GGTH S  +  + R
Sbjct: 232 A--TGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 285

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS---- 354
            I  +  K+             D R G  + +++ + +P F SQTK KL S+ +      
Sbjct: 286 TIKEFFNKNMDYT---------DIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMAPGGMT 336

Query: 355 ---VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTRRKGVLDIASL 410
               V  F+   +  +L ++   A+ I +K+ ++   R A     +    R    ++ + 
Sbjct: 337 VNKYVGDFIKLEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARERAKKANLHNR 396

Query: 411 PGKLADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +       DP      + S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 KLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 456

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 457 KKVVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLLITFFLQF 511

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   EE   + +   S + EI  F    G IS 
Sbjct: 512 FPDLIKKGHVYILQTPLFRVRNKKKTLYCYSEEERVNAINELSPNPEITRF-KGLGEISP 570

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 571 DEFKHFIGKDMRLEQVTLR-KTDAVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 624


>gi|42527747|ref|NP_972845.1| DNA topoisomerase IV subunit B [Treponema denticola ATCC 35405]
 gi|41818575|gb|AAS12764.1| topoisomerase IV, B subunit, putative [Treponema denticola ATCC
           35405]
 gi|325475013|gb|EGC78199.1| topoisomerase IV [Treponema denticola F0402]
          Length = 605

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 180/647 (27%), Positives = 280/647 (43%), Gaps = 53/647 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M+   + + YD   I+ L  L+ ++ R  MYIG     S    G++ ++ EV+DN+IDE 
Sbjct: 1   MA--TKKAVYDESKIKTLSSLEHIRLRTGMYIGRLGDGSNPDDGIYILVKEVIDNSIDEF 58

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I +    +   TV D GRGIP      E +S        ++ G K+N   ++ 
Sbjct: 59  IMGNGSRIDIQ-QEENKITVRDFGRGIPLGK-LVECVS-------VINTGAKYNDDVFQF 109

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS   ++   R+G   E  F  G L +        G   GT V F+
Sbjct: 110 SVGLNGVGTKAVNALSEHFRVVAVRDGKYAEAIFERGKLVSEKSGNTKPGIKNGTLVEFI 169

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P + IF    FN D ++ R+   ++LNS + +S   K            + G+   +   
Sbjct: 170 PDTKIFGDYKFNLDFIEKRIWNYAYLNSGLTLSFNGKL--------FKSENGLLDLLESN 221

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                  +    R +       ++ A    + Y E    F N     DGGTHLS  +  L
Sbjct: 222 VG--TSTIYEVCRFKEK----QLEFAFSHTNNYGETYYSFVNGQYTSDGGTHLSAFKEGL 275

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + I  Y  K+            +D REG  + +S+K+  P F SQTK KL ++EVRS +
Sbjct: 276 LKGINEYFRKN---------YKSEDVREGTCAAVSVKIQAPVFESQTKNKLGNTEVRSWI 326

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
            +     +  WL+++   A   ++  + A+              +     IA    KL D
Sbjct: 327 VNDTKSAVVEWLQKNADSAAK-LESKIIANEKLRTELNTVKKEAKAAAKKIAIKIPKLKD 385

Query: 417 CSER-----DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           C          + + +F+ EGDSA G+    R    QAI  LRGK  N+   +  ++  +
Sbjct: 386 CKFHLGDGKFGEDTMIFITEGDSATGAMVSSRDVLTQAIFSLRGKPENMYGKKRAQIYKN 445

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
            E+  ++ ALG        DI  LRY KI+I TDAD DG HIR LLLTFF      L+ +
Sbjct: 446 AELYNMMMALGI-----ENDIEGLRYSKIVIATDADNDGFHIRNLLLTFFLSYFEELVTS 500

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G ++I++ PL+ +   K   Y   E+  ++ +     S EI  F    G IS  +   FI
Sbjct: 501 GRVHILETPLFRVRTKKETSYCYSEKERDEAVSRLGASSEITRF-KGLGEISPKEFGQFI 559

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
              +K+  +                   G    E  + I  +L +++
Sbjct: 560 GQDIKLLPVTVQTLKKVPSIL---EFYMGKNTPERRKFIMKNLLAEI 603



 Score = 42.7 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 43/212 (20%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +  + QA+ S     E+      +   K A   N +     ++    +  S I++     
Sbjct: 417 RDVLTQAIFSLRGKPENMYGKKRAQIYKNAELYNMMMALGIENDIEGLRYSKIVIA-TDA 475

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
                 +      F      + + S R+      +  +    +           + +   
Sbjct: 476 DNDGFHIRNLLLTFFLSYFEELVTSGRVHILETPLFRVRTKKETSYCYSEKERDEAV--- 532

Query: 730 GRKGIS--MQRYKGLGEMNAS-------QLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            R G S  + R+KGLGE++         Q      +     LL V +            L
Sbjct: 533 SRLGASSEITRFKGLGEISPKEFGQFIGQ------DIK---LLPVTVQ----------TL 573

Query: 781 ----------MGDEVEPRREFIQENSLPSALD 802
                     MG     RR+FI +N L + +D
Sbjct: 574 KKVPSILEFYMGKNTPERRKFIMKN-LLAEID 604


>gi|146321367|ref|YP_001201078.1| DNA gyrase [Streptococcus suis 98HAH33]
 gi|145692173|gb|ABP92678.1| DNA gyrase [Streptococcus suis 98HAH33]
          Length = 528

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/499 (42%), Positives = 312/499 (62%), Gaps = 5/499 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
            SVVNALS+ L + + + G +Y   +  G +   L V G   + +GT V F P  +IF+ 
Sbjct: 7   SSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHFTPDPEIFTE 65

Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++  L  R++EL+FLN  + +S+ DKR    +     Y+GGI ++V YL+ +K  +
Sbjct: 66  TTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKEYHYEGGIASYVEYLNENKDVI 125

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            ++PI  +G  D+I++++AM++   YHENV+ F NNI   +GGTH  G R+ALTR I  Y
Sbjct: 126 FETPIYTEGEMDDITVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRTALTRVINDY 185

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            +K+   K+++ ++ G+D REG T+V+S+K P P+F  QTK KL +SEV  +     +D 
Sbjct: 186 AKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVKITNRLFSDA 245

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            + +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++LPGKLADCS  D  
Sbjct: 246 FAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDAA 305

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+ELF+VEGDSAGGSAK GR RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+GT
Sbjct: 306 KTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGT 365

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G G D FD++K RY K++IMTDADVDGAHIRTLLLT F+R M  ++  G++YI +PP+YG
Sbjct: 366 GFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYG 424

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I  G  ++     +   +       + E      SK  I +      +DD    +  +  
Sbjct: 425 IKVGSEIKEYI--QPGVNQEQELQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNP 482

Query: 604 FYPNHDKTFIEQAVISGVF 622
                 +  ++ A  +   
Sbjct: 483 ENRLMARVSVDDAAEADKI 501



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 2/85 (2%)

Query: 721 SLLDTIF--SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
            L D +   S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F 
Sbjct: 444 ELQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIFD 503

Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803
            LMGD+VEPRREFI+EN++ S LD+
Sbjct: 504 MLMGDKVEPRREFIEENAVYSTLDV 528


>gi|262092494|gb|ACY25665.1| DNA gyrase B [Ruegeria scottomollicae]
          Length = 397

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 248/397 (62%), Positives = 309/397 (77%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS WL+LRI R+G  +   F  G     L V G  G
Sbjct: 1   GKFDSNSYKVSGGLHGVGVSVVNALSDWLELRIWRKGKEHVARFERGDTAEHLSVVGDCG 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + TGTEV FL S+D FS  +F+++TL+ RLREL+FLNS V+I L D+R  E  E  +FY+
Sbjct: 61  DRTGTEVRFLASTDTFSNLEFSFETLEKRLRELAFLNSGVRIVLADERPAERLETELFYE 120

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG++ FV YLDR K P+M++PI I+G RD I I++AM WND YHE VL FTNNIPQ+DGG
Sbjct: 121 GGVKEFVKYLDRSKSPVMEAPIYIKGERDEIGIEIAMWWNDSYHETVLPFTNNIPQRDGG 180

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH++G R ALTR I +Y + S  +K++K S  GDD REG T VLS+K+PDP+FSSQTK+K
Sbjct: 181 THVAGFRGALTRTINNYAQSSGIAKREKISFTGDDAREGLTCVLSVKVPDPKFSSQTKDK 240

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR VVES + + LS W EE+P  AK +V K+++A++ R+AAR+AR+LTRRK  +D
Sbjct: 241 LVSSEVRPVVESLMGEKLSEWFEENPNVAKQVVGKIIEAALAREAARKARELTRRKTAMD 300

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +  L GKL DCSE+DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD
Sbjct: 301 VNFLAGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFD 360

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           +ML SQEIG L+ ALGTGIG+D F+I KLRYHKI+IM
Sbjct: 361 RMLGSQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIM 397


>gi|296187933|ref|ZP_06856325.1| putative DNA topoisomerase IV subunit B [Clostridium
           carboxidivorans P7]
 gi|296047059|gb|EFG86501.1| putative DNA topoisomerase IV subunit B [Clostridium
           carboxidivorans P7]
          Length = 410

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/412 (37%), Positives = 229/412 (55%), Gaps = 18/412 (4%)

Query: 1   MSDNIQNSS-YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M    +    YD  ++  L+ L+ V+ RP MYIG T G  GLHH I+E+LDN+IDE   G
Sbjct: 1   MEQREEKVQVYDVTALTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D   V LN D S T+ DNGRGIPT +H  +  S  E++ T LH GGKFN   YK SGG
Sbjct: 60  FGDKAIVILNKDKSVTIIDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNDVYKTSGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGND 168
           LHGVG +VVNALS W+ + IK+ G+IY   F             G     L + G+   +
Sbjct: 120 LHGVGAAVVNALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNTK-E 178

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT+VTFLP  D+FS  +F +D +  RL+EL+F N  + + +IDKR  E  E     + G
Sbjct: 179 TGTKVTFLPDKDVFSNTEFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKEYHSERG 238

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKD 284
           +  F+ YL+  K  L   PI  +G R+   I    ++ +++ D   E +  + NNIP  +
Sbjct: 239 LLDFIEYLNESKTALHTPPILFEGEREVNGISMYSEVCVQFTDSTTEYIASYVNNIPTTE 298

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
            GTH SG ++ +TR    + +K    K+  +   GDD REG T+++ IK+ +P F  QTK
Sbjct: 299 SGTHESGFKAGMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTK 358

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
            KL ++E  +++        S W+E++   A  I+   +DA+  R+  ++ +
Sbjct: 359 TKLGNTEAYTMMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKIK 410


>gi|119369930|gb|ABL67979.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 230/423 (54%), Positives = 292/423 (69%), Gaps = 5/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS +L L I R+G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT + F PS+ IF+   FN+D L  RLRELSFLNS V+I LID+R  
Sbjct: 61  APLAPVGPSE-QRGTTIRFKPSAQIFTHIQFNHDILAKRLRELSFLNSGVRIELIDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E       ++GG++AFV YL+R + P+ +S    +     ++I++A++WND Y E++ C+
Sbjct: 118 ENTSDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPVTIEVALQWNDSYQESMFCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G RSALTR +  Y+EK   +KKDK    GDD REG T++LS+K+PD
Sbjct: 178 TNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLTAILSVKLPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P      + +      +           + +    P   +   ++       R+AAR+AR
Sbjct: 238 PEVLLADQGQAGLLRGQGHRRGGGERKAAGFSAWAPAGRQSHHRQDARGGRAREAARKAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKG LDIA LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+GK
Sbjct: 298 EMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT--DADVDGAHIR 514
           ILNVE+ARFDKMLSS E+GTLITALG GIG+D FD+ KLRYH++IIMT  DADVDG+HIR
Sbjct: 358 ILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDADADVDGSHIR 417

Query: 515 TLL 517
           TLL
Sbjct: 418 TLL 420


>gi|18916441|dbj|BAB85511.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|19979601|dbj|BAB88756.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979603|dbj|BAB88757.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 181/304 (59%), Positives = 225/304 (74%), Gaps = 2/304 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNSDNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S++ F   ++++  L+HRLREL+FLNS V I L D 
Sbjct: 121 DAVAPLKVVGDAPGRRGTEVTFLASTETFKNVEYDFAMLEHRLRELAFLNSGVNIILSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+K P++ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKSPIVPAPIMVRAEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDP 337
           +PDP
Sbjct: 299 VPDP 302


>gi|19979595|dbj|BAB88753.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/304 (60%), Positives = 228/304 (75%), Gaps = 2/304 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVILNADNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I+L D 
Sbjct: 121 DAVAPLKVVGDAPGKRGTEVTFLASTETFKNIEYDFATLEHRLRELAFLNSGVNIALSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M+Y GG+E FV YLDR+KK L+ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMYYSGGVEEFVKYLDRNKKALVPAPIMVRSEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDP 337
           +PDP
Sbjct: 299 VPDP 302


>gi|119369994|gb|ABL68011.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 200/423 (47%), Positives = 278/423 (65%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVGVSVVNALS  L+L I +EG ++   +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSRRLELGIYQEGRLHRQVYHQGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G+     GT + F P   I     F +DTL HR REL+FLN  + I  + +   
Sbjct: 61  APLSVVGTTA-LRGTSIRFWPDLSIMETDTFLFDTLAHRFRELAFLNPILTI--VLREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE-NVLC 275
             RE T  ++GGI+++  +L+ +KK + +     +        ++A ++ +      +L 
Sbjct: 118 SLREETFHFEGGIKSYNEFLNENKKTIHEVLFFRRELPSGAQFEVAFQYQETTDNETILG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  K+GGTH+ G R+ALTR I  +++    +K ++    G+D REG T+V+S+++P
Sbjct: 178 FANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELR--GEDIREGLTAVVSVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL SS V   +E+F+ + +    EE P  AK I  K +  +M R+AAR+A
Sbjct: 236 DPQFEGQTKAKLGSSWVSGAMETFLAEEMQERFEEFPQIAKKIADKAIQTAMAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++L +RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 296 KELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAILPLKG 355

Query: 456 KILNVERA-RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+A   ++ ++  E+  LITA+G G+G + +    LRYHKIII+TDADVDG+HIR
Sbjct: 356 KILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIITDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|18916423|dbj|BAB85505.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916426|dbj|BAB85506.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 303

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/305 (59%), Positives = 226/305 (74%), Gaps = 2/305 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 DAVAPLKVVGDAPGRRGTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDPR 338
           +PDP+
Sbjct: 299 VPDPK 303


>gi|327406038|ref|YP_004346876.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Fluviicola taffensis DSM 16823]
 gi|327321546|gb|AEA46038.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Fluviicola taffensis DSM 16823]
          Length = 634

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/614 (27%), Positives = 272/614 (44%), Gaps = 56/614 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLEGY 60
           +  + Y  D+I+ L   + ++ RP MYIG          G++ ++ E++DN++DE + G 
Sbjct: 1   MAENQYTEDNIRSLDWKEHIRLRPGMYIGKLGDGASADDGIYILVKEIVDNSVDEFVMGN 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + +  DG  +V D GRGIP      E +S       +++ GGK++ K++K S GL
Sbjct: 61  GKRIDIKV-KDGKVSVRDYGRGIPLGKV-IECVS-------QINTGGKYDSKAFKKSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALS +  +   REG   ++ F  G L   L          GT   F+P   
Sbjct: 112 NGVGTKAVNALSDYFMVYSVREGQKKQVVFSRGELTEDLP-LSKTDEVNGTYFEFIPDES 170

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F    L        +LN  + I    ++           K G++  +       
Sbjct: 171 IFKKFAFKMPYLIKMFWNYCYLNRGLAIYFNGEK--------YQSKDGLKDLLEDNMDG- 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +   I ++G      I++A      Y E+   F N      GGTH S  R ++ + I
Sbjct: 222 -DPLYPIIHLEGDD----IEVAFTHGKTYGEDYYSFVNGQHTTQGGTHQSAFRESIAKVI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE-------VR 353
             + +K              D R+   + +++K+ +P F SQTK KL S E       +R
Sbjct: 277 RDFYKK---------DYDASDIRQSIVAAIAVKVIEPVFESQTKTKLGSQEIEPDGKSMR 327

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA-- 408
           + +  F+ D L  +L  HP  A  + KK+  +   R      R       +K  L     
Sbjct: 328 AFINDFLKDKLDNYLHRHPDVADTLEKKIKQSERERKELSGIRKLARDRAKKASLHNKKL 387

Query: 409 -SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                 L D  +   + + LF+ EGDSA GS  + R    QA+  LRGK LN        
Sbjct: 388 RDCRSHLTDLKDEKREMTTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNCYGLTKKV 447

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   +  AL         D++ LRY+ I+I TDADVDG HIR LLLTFF +  P 
Sbjct: 448 VYENEEFNLIQAAL-----DIEEDMDNLRYNNIVIATDADVDGMHIRLLLLTFFLQFFPD 502

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+    +Y+++ PL+ +   K   Y   +E     +     + EI  F    G IS ++ 
Sbjct: 503 LVKRNHVYVLQTPLFRVRNKKKTIYCYSDEERRAAISELGKNPEITRF-KGLGEISPDEF 561

Query: 588 RNFIDDALKIDKLI 601
           ++FI D ++++ ++
Sbjct: 562 KHFIGDDIRLEPVL 575


>gi|19979597|dbj|BAB88754.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979599|dbj|BAB88755.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/304 (60%), Positives = 226/304 (74%), Gaps = 2/304 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNADNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 DAVAPLKVVGDAPGKRGTEVTFLASTETFKNVEYDFATLEHRLRELAFLNSGVNIVLSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK L+ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKALVPAPIMVRSEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDP 337
           +PDP
Sbjct: 299 VPDP 302


>gi|18916417|dbj|BAB85503.1| DNA gyrase subunit B [Bradyrhizobium elkanii USDA 76]
 gi|18916438|dbj|BAB85510.1| DNA gyrase subunit B [Bradyrhizobium elkanii]
 gi|19979619|dbj|BAB88765.1| subunit B protein of DNA gyrase [Bradyrhizobium elkanii]
          Length = 303

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/305 (59%), Positives = 227/305 (74%), Gaps = 2/305 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + VTLN D S TV D+GRGIP  +HKEEG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 DAVAPLKVVGDAPGKRGTEVTFLASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDPR 338
           +PDP+
Sbjct: 299 VPDPK 303


>gi|293372368|ref|ZP_06618752.1| DNA topoisomerase IV subunit B [Bacteroides ovatus SD CMC 3f]
 gi|292632551|gb|EFF51145.1| DNA topoisomerase IV subunit B [Bacteroides ovatus SD CMC 3f]
          Length = 625

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/655 (27%), Positives = 294/655 (44%), Gaps = 58/655 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLE 58
           DN     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 10  DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I +T+  +   +V D GRGIP        I A  +    L+ GGK++ K++K S 
Sbjct: 70  QAGKKIEITVEENLRVSVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFKKSV 121

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  ++R  R+G +   +F  G L      T +   + GT + F P 
Sbjct: 122 GLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTD--ETQNTEEENGTYIFFEPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I     R           + G+   ++    
Sbjct: 180 NTLFLNYSFKPEFIETMLRNYTYLNTGLAIIYNGHRI--------LSRNGLVDLLNDNMT 231

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   I ++G      I++A      Y E    F N      GGTH S  +  + R
Sbjct: 232 A--TGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 285

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------ 352
            I  +  K+             D R G  + +++ + +P F SQTK KL S+ +      
Sbjct: 286 TIKEFFNKNMDYT---------DIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMVPGGVT 336

Query: 353 -RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTRRKGVLDIASL 410
               V  F+   +  +L ++   A+ I +K+ ++   R A     +    R    ++ + 
Sbjct: 337 VNKYVGDFIKLEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARERAKKANLHNR 396

Query: 411 PGKLADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +       DP      + S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 KLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 456

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 457 KKVVYENEEFNLLQAALNIEDG-----LDGLRYNKVIVATDADVDGMHIRLLLITFFLQF 511

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   EE   + +   S + EI  F    G IS 
Sbjct: 512 FPDLIKKGHVYILQTPLFRVRNKKKTIYCYSEEERVNAINELSPNPEITRF-KGLGEISP 570

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 571 DEFKHFIGKDMRLEQVSLR-KTDAVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 624


>gi|148793394|gb|ABR12761.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 397

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 237/399 (59%), Positives = 309/399 (77%), Gaps = 4/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI
Sbjct: 60  TRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+DGGTH
Sbjct: 119 RAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           LSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 LSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 397


>gi|301477618|dbj|BAJ12094.1| DNA gyrase subunit beta [Pandoraea sp. TA25]
          Length = 426

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 239/428 (55%), Positives = 315/428 (73%), Gaps = 15/428 (3%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGSAGNDT 169
           GVGVS VNALS++LKL ++R+G  + M F  G+              +PL + G   +  
Sbjct: 1   GVGVSCVNALSTYLKLTVRRDGKKHFMEFHQGVPQNRELEMVDGVETSPLKLLGDT-DKR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +       + GG+
Sbjct: 60  GTEVHFLADETIFGKVEYHYDILAKRMRELSFLNNGVRIRLTDQRTGKE--DDFAFGGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + FV Y+++ K  L  +   + G RD I +++AM+WND Y+E VLCFTNNIPQ+DGG+HL
Sbjct: 118 KGFVEYINKSKTVLHPTVFHVMGERDGIGVEVAMQWNDSYNETVLCFTNNIPQRDGGSHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GLR+A+TR I  Y+ +S  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVS
Sbjct: 178 TGLRAAMTRVINKYIAESEIAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR+ VE +V   L  +L+E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD   
Sbjct: 238 SEVRAPVEEYVAKALEDFLQETPNDAKIICTKIVEAARARDAARKAREMTRRKGVLDGVG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFDK++
Sbjct: 298 LPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDKLI 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           SS++I TLITALG GIG+D ++I+KLRYH+IIIMTDADVDGAHIRTLLLTF +RQ P LI
Sbjct: 358 SSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQGPELI 417

Query: 530 HNGFLYII 537
             G++YI 
Sbjct: 418 ERGYVYIA 425


>gi|239735447|dbj|BAH70490.1| gyrase B subunit [Cardinium endosymbiont of Tetranychus urticae red
           form B]
          Length = 462

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 225/460 (48%), Positives = 308/460 (66%), Gaps = 9/460 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS+ L + + R G IY+  ++ GI   P+   G   +  GT V F P 
Sbjct: 1   GLHGVGVSCVNALSAHLAVTVYRNGKIYKQEYVQGIPQYPVKEVG-TTDLRGTTVHFTPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
           S IF+   +N  T+ +RL+EL++LN  +++ L D+R  +    P   T   +GG+  FV+
Sbjct: 60  SSIFTTTVYNLHTIVNRLQELAYLNVGLKMQLEDRRERDEAGNPFGQTFHSQGGLLEFVA 119

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD  K  +M +PI ++G ++N+ + +AM +N GY E V+ + NNI   +GG H++G R 
Sbjct: 120 HLDSSKVSIMPAPILVEGEKNNVVVQVAMTYNTGYSETVVSYVNNIHTIEGGIHVTGFRR 179

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY +KS   +K K  +IGDD REG T+V+S+K+ +P+F  QTK KL ++EV+ 
Sbjct: 180 ALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQG 239

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES V + L  +LEEHP EAK+I+ KV+ A+  R AAR+AR++ +RK VL   SLPGKL
Sbjct: 240 AVESCVGEVLHYYLEEHPKEAKLIINKVIVAAQARQAARKAREMVQRKNVLMSNSLPGKL 299

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCSERDP   ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  K+  ++++
Sbjct: 300 ADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQVYKIYDNEQV 359

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +ITALG  +G D  D     +KLRYHKI+IMTDADVDG+HIRTL+LTFFFR M  +I 
Sbjct: 360 RNMITALGVTMGTDGNDQAIHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYMRDIIE 419

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            G LYI  PPLY + R K  QY   +   E  +   SL +
Sbjct: 420 KGHLYIASPPLYLVKRDKEEQYCWTDSEKEASVTQFSLKD 459


>gi|19979617|dbj|BAB88764.1| subunit B protein of DNA gyrase [Bradyrhizobium elkanii]
 gi|19979621|dbj|BAB88766.1| subunit B protein of DNA gyrase [Bradyrhizobium elkanii]
          Length = 303

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/305 (59%), Positives = 227/305 (74%), Gaps = 2/305 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + VTLN D S TV D+GRGIP  +HKEEG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 DAVAPLKVVGEAPGKRGTEVTFLASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDPR 338
           +PDP+
Sbjct: 299 VPDPK 303


>gi|148616478|gb|ABQ96982.1| GyrB [Nocardiopsis tropica]
          Length = 424

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 204/425 (48%), Positives = 283/425 (66%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L + I+  G+++          
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTALDVEIRVHGHVWRQHCEMTAPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G   ++TGT++TF P   IF    F ++TL  R++E++FLN  + I++ D+R  
Sbjct: 62  GEL-VKGETTDETGTQITFWPDGSIFETTTFTFETLARRMQEMAFLNKGLSITIRDERPE 120

Query: 217 E----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y+ G+  +V +++  K+P   S I  +   D I++++AM+WN  Y  +
Sbjct: 121 HTDGGPTVNTFHYEDGLSDYVRHINAKKEPAHASIISFEEEGDGIAVEVAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y       ++   ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQKLLREKDDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK +V K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDVVSKASQAARARVAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR+  NQAILP
Sbjct: 301 RQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHNQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI ++ FD  KLRYHK+I+MTDADVDG+H
Sbjct: 361 IRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEE-FDAEKLRYHKVILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|300865367|ref|ZP_07110178.1| DNA gyrase subunit B (fragment) [Oscillatoria sp. PCC 6506]
 gi|300336670|emb|CBN55328.1| DNA gyrase subunit B (fragment) [Oscillatoria sp. PCC 6506]
          Length = 410

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/410 (39%), Positives = 246/410 (60%), Gaps = 11/410 (2%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           ++Y AD IQIL   +AV+KRP MYIG T G  GLHH++YEV+DN+IDE++ GY   I V 
Sbjct: 2   TNYSADQIQILTPTEAVRKRPGMYIG-TTGARGLHHLVYEVVDNSIDEAMAGYCTHIQVD 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +N DGS TV+D+GRGIP+D+  + G S  E ++T LH G   ++ SYKVSGGLHGVG++V
Sbjct: 61  INADGSVTVTDDGRGIPSDIVAKNGKSFVETVLTVLHRGEWCDRDSYKVSGGLHGVGIAV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QD 186
           +NALS WL++ + R+  IY   F  GI    L+   S  N TGT VTF P S IF+   +
Sbjct: 121 INALSEWLEVTVWRKEQIYTQRFERGIPVTELIAKPSLENRTGTSVTFKPDSQIFTTSIE 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKK 241
           F+Y+T    LR+++++N  + I L D          PR  T  ++ GI  +V+YL+  K+
Sbjct: 181 FDYNTFAIHLRQIAYVNPGLTIILTDNSLEMLDSSSPRIETYCFELGIREYVAYLNSDKE 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWN---DGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           PL +  I I+G R+ I + +A +W    +  ++ +L F N+I   DGGTH+  L+ A+ R
Sbjct: 241 PLHEEVIYIEGDRNGIQVQIAFQWYVPSEYGYDKLLGFANSIRTIDGGTHIESLKLAIPR 300

Query: 299 QITSYVEKSFGSKKDKRSVIGDD-CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
            +++   K    K    ++   D    G+T ++++K+P+P F   T+ +L + EVR  +E
Sbjct: 301 TVSAIAHKLGKLKDADTNLGWMDGFNCGYTGIIAVKLPNPIFEGPTRTRLANLEVREFIE 360

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           S V + L+ +LE HP  A  IV++ + A       R+ R L R++ +L  
Sbjct: 361 SLVREKLTEYLEAHPDVAIAIVEQAIQAHNTAVTKRQERVLLRQQELLKD 410


>gi|163756901|ref|ZP_02164009.1| DNA topoisomerase IV subunit B [Kordia algicida OT-1]
 gi|161323137|gb|EDP94478.1| DNA topoisomerase IV subunit B [Kordia algicida OT-1]
          Length = 618

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 189/665 (28%), Positives = 302/665 (45%), Gaps = 64/665 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS   QNS Y  ++I+ L   + ++ RP MYIG     S    G++ ++ EVLDN+IDE 
Sbjct: 1   MS---QNSQYSEENIRTLDWREHIRTRPGMYIGKLGDGSSADDGIYILVKEVLDNSIDEF 57

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I V++       V D GRGIP            +V+ ++++ G K++ K++K 
Sbjct: 58  VMGVGKTIEVSIQGT-KVIVRDYGRGIPLGK-------VVDVV-SKMNTGAKYDSKAFKK 108

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS++ ++   R+G      F  G+L +            GT+VTF+
Sbjct: 109 SVGLNGVGTKAVNALSTYFRVESTRDGKSSAAEFATGVLKDK-EFLEETSRRRGTKVTFV 167

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   IF    F  + +   LR   +LN  + I    ++         F + G++  +   
Sbjct: 168 PDETIFKNFKFRMEYVAKMLRNYVYLNPGLTIIFNGEK--------FFSENGLKDLLED- 218

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +++ ++   I ++G    +++         Y E    F N      GGTH S  R A+
Sbjct: 219 NNNQEDMLYPIIHLKGDDIEVAMT---HSKTQYSEEYHSFVNGQHTTQGGTHQSAFREAI 275

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + I  +  K++ +          D R+   S +SIK+ +P F SQTK KL S+++    
Sbjct: 276 VKTIRDFYGKNYEAS---------DIRKSIISAISIKVMEPVFESQTKTKLGSTDMGGDL 326

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD---LTRRKGVLD 406
              R+ V  F+   L  +L ++P  A+ + +K+L A   R      R       +K  L 
Sbjct: 327 PTVRTYVNDFIGKYLDNYLHKNPETAEKLQRKILQAERERKELSGIRKLAKERAKKASLH 386

Query: 407 IA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                     L D  +    +S LF+ EGDSA GS  + R    QA+  LRGK LN    
Sbjct: 387 NKKLRDCRIHLGDVKKDRRLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYAM 446

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR LL+TFF +
Sbjct: 447 SKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQ 501

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI  G LYI++ PL+ +   K   Y   E      +   S   EI  F    G IS
Sbjct: 502 FFPELIKEGHLYILQTPLFRVRNKKETIYCYSEAEKLTAIEKLSGKPEITRF-KGLGEIS 560

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            ++ ++FI D +++D ++ D   + ++              ++       + + L   L+
Sbjct: 561 PDEFKHFIGDDIRLDPVMLDRETSIEELLQFYM-------GKNTPNRQEFIINNLKVELD 613

Query: 644 FIAEK 648
            I EK
Sbjct: 614 LIEEK 618


>gi|187917918|ref|YP_001883481.1| DNA topoisomerase IV subunit B [Borrelia hermsii DAH]
 gi|119860766|gb|AAX16561.1| hypothetical protein BH0036 [Borrelia hermsii DAH]
          Length = 598

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 194/642 (30%), Positives = 284/642 (44%), Gaps = 55/642 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++ ++YD   I  L  L+ ++ R  MYIG     S    G++ ++ E++DN+IDE + GY
Sbjct: 1   MKTNNYDESKIVTLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILVKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +    D   +V D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GKEIVIK-KEDNVISVRDYGRGIPLGK-------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  REGN +E  F  G L N     G +    GT + FL  ++
Sbjct: 112 NGVGTKAVNALSSKFLVRSIREGNFFEAVFSKGNLIN--TTEGKSDEHDGTYIEFLADTE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  ++I+  D+              G+  F++   + +
Sbjct: 170 IFGKYKYSEDFLRRRFFHYACLNKGLKINYNDQ--------IFQSNNGLLDFINDEIKDE 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYNFVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTSDGGTHQTGFREGFARAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E RS V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRSNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              +   L +    AK I  KV+D   +R      R    ++    I+    KL DC   
Sbjct: 328 QRVILEILYKDKTLAKAIESKVVDNERLRKELSSVRRE-AKERAKRISFKIPKLKDCKFH 386

Query: 421 DPKKS------ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
             +KS       +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNEKSMHSGSTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+KI+I TDAD DG HIR LLLTFF      L+ N  +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKIVIATDADFDGFHIRNLLLTFFLTYFEDLVLNKHI 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           YI++ PL+ +    S  Y   EE  +  +    L           G IS ++ R+FID A
Sbjct: 502 YILETPLFRVRNKSSTIYCYSEEEKQKAIFE--LKNPEVTRFKGLGEISPSEFRSFIDVA 559

Query: 595 LKIDKLIKDFYPNHDKTFIEQA-VISGVFNCESDQEINVSLA 635
                 +      + K   EQ     G    E    I  +L 
Sbjct: 560 T---IKLTKVDLVNIKEIKEQLGFYMGPNTPERRNFIMENLI 598



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 20/194 (10%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +    QA+ S     ++  E N S   K     N +     +    ++  + I++     
Sbjct: 415 RDVYTQAIFSLRGKPQNMFEKNKSEIYKNEELYNMMVALGIEESIENLRYNKIVIA-TDA 473

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
                 +      F        + +  I      +  +      I           IF +
Sbjct: 474 DFDGFHIRNLLLTFFLTYFEDLVLNKHIYILETPLFRVRNKSSTIYCYSEEEKQKAIFEL 533

Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV-KIT----DASQADDLFSRL---M 781
             K   + R+KGLGE++ S         + RS + V  I     D     ++  +L   M
Sbjct: 534 --KNPEVTRFKGLGEISPS---------EFRSFIDVATIKLTKVDLVNIKEIKEQLGFYM 582

Query: 782 GDEVEPRREFIQEN 795
           G     RR FI EN
Sbjct: 583 GPNTPERRNFIMEN 596


>gi|119952842|ref|YP_945051.1| DNA topoisomerase IV subunit B [Borrelia turicatae 91E135]
 gi|119861613|gb|AAX17381.1| DNA gyrase subunit B [Borrelia turicatae 91E135]
          Length = 598

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/598 (30%), Positives = 270/598 (45%), Gaps = 51/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +  +SYD   I  L  L+ ++ R  MYIG     S    G++ ++ E++DN+IDE + G+
Sbjct: 1   MNTNSYDESKIVTLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILVKEIIDNSIDEFIMGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +    +   +V D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GKEILIK-KENNIISVRDYGRGIPLGK-------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R+GN +E  F  G L N   + G +    GT + FL  ++
Sbjct: 112 NGVGTKAVNALSSNFLVRSIRDGNFFEAIFSKGNLIN--TIEGKSNEQNGTYIEFLADTE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  ++I+  D+              G+  F++   + +
Sbjct: 170 IFGKYKYSEDFLRRRFFHYACLNKGLKINYNDQ--------IFQSDNGLLDFINAEIKGE 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDFVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTSDGGTHQTGFREGFARAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E RS V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLIATLSVKIKDPIFESQTKNKLGNIETRSSVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC--- 417
              +   L +    AK I  KV+D   +R      R    ++    I+    KL DC   
Sbjct: 328 QRIILEILYKDKTLAKAIENKVVDNERLRKELSSVRKE-AKERAKKISFKIPKLKDCKFH 386

Query: 418 ---SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                     + +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNEKSMHSDSTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+KI+I TDAD DG HIR LLLTFF      L+ NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKIVIATDADFDGFHIRNLLLTFFLTYFEDLVLNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +    S  Y       E     + L           G IS ++ R+FID
Sbjct: 502 YILETPLFRVRNKSSTIYCY--FEEEKQKAVRELKNPEVTRFKGLGEISPSEFRSFID 557


>gi|86143382|ref|ZP_01061784.1| DNA topoisomerase IV subunit B [Leeuwenhoekiella blandensis MED217]
 gi|85830287|gb|EAQ48747.1| DNA topoisomerase IV subunit B [Leeuwenhoekiella blandensis MED217]
          Length = 618

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/633 (27%), Positives = 284/633 (44%), Gaps = 57/633 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M++  +   Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN+IDE 
Sbjct: 1   MAEQTK---YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNSIDEF 57

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I V++       V D GRGIP            +V+ ++++ GGK++ +++K 
Sbjct: 58  VMGAGKTIEVSIQGT-RVIVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKK 108

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS + ++   R+       F  G                GT++TF+
Sbjct: 109 SVGLNGVGTKAVNALSEYFRVESTRDNKSASAEFERG-TLKDEEFLDETSRRKGTKITFV 167

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   IF    F  + +   L+   +LN  + I    ++         + + G++  +   
Sbjct: 168 PDDTIFKNYKFRNEYVSRMLKNYVYLNPGLTIVFNGEK--------FYSENGLKDLLGDR 219

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                 L    I ++G    +++         Y E    F N      GGTH +  R A+
Sbjct: 220 IAENDILYP-IIHLRGDDIEVALT---HSRTQYSEEYHSFVNGQNTTQGGTHQAAFREAV 275

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            R I  +  K++ +          D R+   S +SIK+ +P F SQTK KL S+++    
Sbjct: 276 VRTIREFYNKNYDAS---------DIRKSIVSAISIKVMEPVFESQTKTKLGSTDMGGEL 326

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLD 406
              R+ V  F+   L  +L ++P  A+ + +K+L A   R      R       +K  L 
Sbjct: 327 PTVRTYVNDFLKTKLDNYLHKNPETAEKLQRKILQAERERTELSGIRKLAKERAKKASLH 386

Query: 407 IA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                     L D  +    +S LF+ EGDSA GS  + R    QA+  LRGK LN    
Sbjct: 387 NKKLRDCRVHLTDSKKERNLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYNM 446

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L +AL          +  LRY+ I+I TDADVDG HIR LL+TFF +
Sbjct: 447 SKKIVYENEEFNLLQSALNI-----EESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQ 501

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI  G L+I++ PL+ +   K   Y   E+   D +   S   EI  F    G IS
Sbjct: 502 FFPELIKEGHLFILETPLFRVRNKKKTIYCYSEQERRDAIEELSGKPEITRF-KGLGEIS 560

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
            ++ ++FI + +++  ++ D   + ++      
Sbjct: 561 PDEFKHFIGENIRLAPIMLDEAMSIEEILQFYM 593


>gi|148971403|gb|ABR20239.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 202/423 (47%), Positives = 288/423 (68%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKV+GGLHGVGVSVVNALS  L L I ++G  +   +  G+L+
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVAGGLHGVGVSVVNALSDTLILEIDQKGQHFHQVYHKGVLE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL VTG     TGT + F P   I     F+YD L HR RELS+LN ++ I+L ++ + 
Sbjct: 61  APLAVTG-TSERTGTAIRFTPDLTIMETDQFSYDVLAHRFRELSYLNPALTITLAEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+++++ +K+ +  S    +   +    ++++++ D    E +L 
Sbjct: 119 -LREAVFHDEGGIRSFLAFVNENKRIIHDSLYFRKTFENGSLFEVSLQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GG+H+ G RSALTR +  Y+ +   +K ++  V G+D REG +S++SIK+P
Sbjct: 178 YVNNIPTREGGSHVRGFRSALTRVVNRYIREKNLNKGEE--VKGEDIREGLSSIISIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+++ L    E+    A+ I  K +  +  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVSGAMETFLSEALEDAFEKQGTVARAIADKAILTAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP K+EL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPAKAELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+ +  +K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKTKGVEKFITHDEVRALITAVGCGLGGEEFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|10039309|dbj|BAB13315.1| DNA gyrase B subunit [Capnocytophaga ochracea]
          Length = 481

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 216/474 (45%), Positives = 300/474 (63%), Gaps = 18/474 (3%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ SYKVSGGLHGVGVS VNALS  L   + R+G I++  +  G+   P+   G+  +  
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSDHLTATVYRDGKIWQQEYQRGVAMYPVKQVGNT-DKR 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMF 224
           GT+VTF P   IF     + YDTL  R+REL++LN  + I+L D R+ +          +
Sbjct: 60  GTKVTFHPDEVIFEQTIEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKGNFITEKFY 119

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            + G++ FV +LD ++ P++ + I + G ++ I +++AM +ND Y+EN+  + NNI   +
Sbjct: 120 SQNGLKEFVKFLDGNRMPIIGNVIAMDGEKNGIPVEVAMIYNDSYNENLHSYVNNINTSE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI------GDDCREGFTSVLSIKMPDPR 338
           GGTHL G R  LTR + +Y +KS   +K  +         GDD REG T+V+S+K+ +P+
Sbjct: 180 GGTHLQGFRMGLTRTLKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQ 239

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V   L  +LEE+P +AK IV+KV+ A+  R AAR+AR++
Sbjct: 240 FEGQTKTKLGNREVTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREM 299

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            +RK V+    LPGKLADCSE DP+K ELFLVEGDSAGG+AKQGR+++ QAILPLRGKIL
Sbjct: 300 VQRKSVMSGGGLPGKLADCSEEDPEKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKIL 359

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIR 514
           NVE+A   K+  S EI  + TALG  +G +        +KLRYHK+IIM DADVDG+HI 
Sbjct: 360 NVEKAMQHKVFDSDEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHIT 419

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQ 566
           TL+LTFFFR M  LI NG +YI  PPLY       K  +Y  +++  +      
Sbjct: 420 TLILTFFFRYMRELIENGHVYIATPPLYLVKSKNSKREEYAWNDKQRDALSAEM 473


>gi|255012021|ref|ZP_05284147.1| DNA topoisomerase IV subunit B [Bacteroides fragilis 3_1_12]
 gi|313149858|ref|ZP_07812051.1| DNA topoisomerase IV subunit B [Bacteroides fragilis 3_1_12]
 gi|313138625|gb|EFR55985.1| DNA topoisomerase IV subunit B [Bacteroides fragilis 3_1_12]
          Length = 623

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/619 (27%), Positives = 278/619 (44%), Gaps = 59/619 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           +     Y  D+I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN+IDE    
Sbjct: 10  DNNPVEYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHPEDGIYVLLKEVIDNSIDEFKMQ 69

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I + +  +   +V D GRGIP            E + + L+ GGK++ K++K S G
Sbjct: 70  SGKKIEIRIEENLRVSVRDYGRGIPQGK-------LVEAV-SVLNTGGKYDSKAFKKSVG 121

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVGV  VNALSS  ++R  R+G +   +F  G L            + GT + F P +
Sbjct: 122 LNGVGVKAVNALSSNFEVRSYRDGKVRCATFTKGELITDHTE--DTEEENGTYIFFEPDN 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F    F  + ++  LR  ++LN+ + I    +R           + G+   ++     
Sbjct: 180 TLFLNYTFRPEFIETMLRNYTYLNTGLAIIYNGQRI--------LSRNGLVDLLNDNMTA 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +   + ++G      I++A      Y E    F N      GGTH S  +  + R 
Sbjct: 232 --TGLYPIVHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIART 285

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS----- 354
           I  +  K+             D R G  + +++ + +P F SQTK KL S+ +       
Sbjct: 286 IKEFYNKNQDYT---------DIRNGLVAAIAVNVEEPMFESQTKIKLGSTNMSPGGVTV 336

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGV 404
              V  FV   +  +L +H   A+I+++K+ D+   R         A  RA+        
Sbjct: 337 NKFVGDFVKQEVDNFLHKHADVAEIMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRK 396

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L    +          + +   +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 LRDCRIHLNDVKGKGLEEESC-IFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 455

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 456 KKVVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLLITFFLQF 510

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   EE   + +   S + EI  F    G IS 
Sbjct: 511 FPDLIKKGHVYILQTPLFRVRNKKKTLYCYTEEERVNAIKELSPNPEITRF-KGLGEISP 569

Query: 585 NDLRNFIDDALKIDKLIKD 603
           ++ ++FI   ++++++   
Sbjct: 570 DEFKHFIGKDMRLEQVSLR 588


>gi|19909669|dbj|BAB87030.1| DNA gyrase subunit B [Halorhodospira halophila]
          Length = 389

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 231/392 (58%), Positives = 289/392 (73%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++   + +G     L V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSERLRLVIERDGKVHVQEYADGAPVTSLKVVGETE-QTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T +TF PS  +F+   +NYD L  R RELSFLN  V+I L D+R+ +       Y GGI 
Sbjct: 60  TRITFKPSEAVFTEVQYNYDILAKRFRELSFLNPGVRIVLKDERTEKE--DVFEYTGGIR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+R+K PL  +   +   RD + +D+AM+WND Y EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEHLNRNKTPLHPTVFYVTAWRDGVGVDVAMQWNDSYQENIFCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR +  Y+E     KK K +  G+D REG T+V+S+K PDP+FSSQTK+KLVSS
Sbjct: 178 GFRGALTRTVNGYLETEGYLKKLKSTPSGEDVREGLTAVVSVKAPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+ +VES +++ L  +L EHP EA+ I ++V+ AS  R+AAR+AR++TRRK  LDIA L
Sbjct: 238 EVKGIVESLLSESLQTFLAEHPPEARAIAERVIQASRAREAARKAREMTRRKDALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP KSE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQERDPAKSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+D FD +KLRYH+III
Sbjct: 358 SAEVGTLITALGCGIGRDDFDPDKLRYHRIII 389


>gi|332800613|emb|CBY89796.1| GyrB protein [Flavobacterium xinjiangense]
          Length = 424

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 193/425 (45%), Positives = 271/425 (63%), Gaps = 11/425 (2%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+ A EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L   +   +G
Sbjct: 1   VGIHKKEGVXALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLIATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            IY+  +  G    P+   G      GT VTF P   IF+    F+YDTL  R+RELS+L
Sbjct: 61  KIYQQEYEKGKALYPVKQIGETT-KRGTIVTFYPDETIFTQTTEFSYDTLSARMRELSYL 119

Query: 203 NSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR                 G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKRELDKDGNFVSEVFHSDEGLKEYIRYLDGNREPIIAHVISMDNEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINK 494
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG        +I K
Sbjct: 360 AKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTAEDSKALNIEK 419

Query: 495 LRYHK 499
           LRYHK
Sbjct: 420 LRYHK 424


>gi|18147171|dbj|BAB83066.1| DNA gyrase subunit B [Alcanivorax sp. Haw-2]
          Length = 395

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 240/398 (60%), Positives = 305/398 (76%), Gaps = 4/398 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+ D PL V G    
Sbjct: 1   KFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLEVVG-TTE 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            +GT V F PS++ FS   F+YD L  RLRELSFLNS V+I L D+RS E       Y+G
Sbjct: 60  TSGTSVHFRPSAETFSNIKFHYDILAKRLRELSFLNSGVRIHLKDERSGEE--EIFEYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           G+ AFVSYL+ +K PL Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGG
Sbjct: 118 GLSAFVSYLNVNKTPLNQVFHFQYEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R ALTR + +Y++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+  VE  + +    +L E+P EAK I +K++DA+  RDAAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC ++DP +SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQQKDPAQSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           KMLSSQE+GTLITALG GIG+D +++ KLRYH+IIIMT
Sbjct: 358 KMLSSQEVGTLITALGCGIGRDEYNVEKLRYHRIIIMT 395


>gi|269799096|gb|ACZ43826.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 368

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 208/370 (56%), Positives = 273/370 (73%), Gaps = 4/370 (1%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSG
Sbjct: 1   GHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS
Sbjct: 61  GLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ 
Sbjct: 120 HETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNV 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 239 RTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 298

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLAD
Sbjct: 299 EQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLAD 358

Query: 417 CSERDPKKSE 426
           C E+DP  SE
Sbjct: 359 CQEKDPALSE 368


>gi|19909747|dbj|BAB87069.1| DNA gyrase subunit B [bacterium MBIC3369]
          Length = 296

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 179/291 (61%), Positives = 223/291 (76%)

Query: 39  SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98
           SGLHHM+YEV+DN+IDE+L G+AD +TVTLN DGS TV+DNGRGIP D+H EEGISAAEV
Sbjct: 1   SGLHHMVYEVVDNSIDEALAGHADYVTVTLNADGSVTVTDNGRGIPVDIHPEEGISAAEV 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT+LHAGGKF+  SYKVSGGLHGVGVSVVNALS+ L LRI R    + + F +G    P
Sbjct: 61  IMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSTTLDLRIYRNDKEHFIRFHHGESAAP 120

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L V G A   +GTEVTF PS + F+  +F+YDTL+HRLREL+FLNS  +I L D R  EP
Sbjct: 121 LEVVGDAPGKSGTEVTFTPSPETFTKTEFDYDTLEHRLRELAFLNSGARIILTDNRGVEP 180

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
               ++Y+GG+EAFV YLDR K PL++ P+ +   +D I++++AM WN  YHENVLCFTN
Sbjct: 181 HVEELYYEGGLEAFVRYLDRAKHPLIEEPVTMMAEKDGITVEVAMWWNSSYHENVLCFTN 240

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           NIPQ+DGGTHL+G R+ALTRQ+T Y + S   K++K S  G+DCREG + V
Sbjct: 241 NIPQRDGGTHLAGFRAALTRQLTGYADTSGLLKREKVSPTGEDCREGLSCV 291


>gi|307939298|gb|ADN95840.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 436

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 209/435 (48%), Positives = 292/435 (67%), Gaps = 21/435 (4%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF++ SYKVSGGLHGVGVS VNALS+ LK+ ++R G+ YE  +  GI    +
Sbjct: 1   MTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---- 215
              G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R     
Sbjct: 61  KEVGLSE-EHGTEVQFLPDASIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLEG 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
              R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV 
Sbjct: 120 GVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVY 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+
Sbjct: 180 SYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+
Sbjct: 240 QEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLR
Sbjct: 300 AKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLRYHK 499
           GKILNVE+A+  ++L ++EI  +ITALG                G      + +KLRYHK
Sbjct: 360 GKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSKLRYHK 419

Query: 500 IIIMTDADVDGAHIR 514
           +IIMTDADV G+HIR
Sbjct: 420 VIIMTDADVXGSHIR 434


>gi|262395286|ref|YP_003287140.1| topoisomerase IV subunit B [Vibrio sp. Ex25]
 gi|262338880|gb|ACY52675.1| topoisomerase IV subunit B [Vibrio sp. Ex25]
          Length = 553

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 185/509 (36%), Positives = 273/509 (53%), Gaps = 12/509 (2%)

Query: 83  IPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
           +P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R+
Sbjct: 1   MPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVTVRRD 60

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           G +YE++F +G   + L VTG+ G    GT V F P +  F   +F+   L + LR  + 
Sbjct: 61  GQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSANFSVTRLVNNLRAKAV 120

Query: 202 LNSSVQISLIDKRSPEPREITMFY--KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           L   ++I+L DK + +  +       K  +   V       +              N ++
Sbjct: 121 LCPGLEITLTDKVNGKDYKWYYEDGLKDYLAEGVKGYPVIPEEPFTGEFLADTEAANWAV 180

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
              +   +G       + N IP   GGTH++GLR  L   +  + E      +    + G
Sbjct: 181 ---IWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLLEAMREFCEFRNLLPRG-VKLTG 236

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD  +  + VLS+K+ DP+F+ QTKE+L S +  + V   V D  S WL E P  A+ + 
Sbjct: 237 DDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSGVVKDAFSLWLNEKPQLAEQLA 296

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +  +  +       RA     RK V    +LPGKL DCS +D  ++E+F VEGDSAGGSA
Sbjct: 297 EVCIANAH---RRMRAAKKVVRKKVASGPALPGKLTDCSAQDLSRTEIFFVEGDSAGGSA 353

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQ R RE QA++PLRGKILN      D++L+SQE+  +  ++  GI  DS ++  LRY K
Sbjct: 354 KQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI--SVALGIDPDSDNLEGLRYGK 411

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           I I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY I  GK + Y  D++  
Sbjct: 412 ICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPPLYRIDCGKEVFYALDDDEK 471

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLR 588
           +  L   S  +        KG+   N L+
Sbjct: 472 DGILERLSKKKAKINVQRFKGLGEMNPLQ 500



 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D++   ++   L+G 
Sbjct: 475 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDSTATMEMMDMLLGK 534

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 535 KRADDRRSWLQNN 547


>gi|269799076|gb|ACZ43816.1| DNA gyrase subunit B [Moritella japonica]
          Length = 370

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 207/372 (55%), Positives = 273/372 (73%), Gaps = 4/372 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVS
Sbjct: 1   AGHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I R G I+   + +G+ + P+  TG     TGTE+ F P
Sbjct: 61  GGLHGVGVSVVNALSEKLELTIFRHGKIHNQIYRHGVPEAPMAETG-VIEGTGTELRFWP 119

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F+YD L  RLRELSFLNS V I LID+R  + ++    Y+GGI+AF+ YL+
Sbjct: 120 SHETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKQDHFVYEGGIKAFIDYLN 178

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R AL
Sbjct: 179 VNKTPINKEAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGAL 238

Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           TR + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 239 TRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 298

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLA
Sbjct: 299 VEQAMGEKLAEYLLENPKEAATVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLA 358

Query: 416 DCSERDPKKSEL 427
           DC E+DP  SEL
Sbjct: 359 DCQEKDPALSEL 370


>gi|328349731|emb|CBY89173.1| GyrB protein [Flavobacterium sp. R-38294]
          Length = 413

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 192/409 (46%), Positives = 269/409 (65%), Gaps = 6/409 (1%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
            D+HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVS VNALS  L+  + REG 
Sbjct: 1   VDIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSDHLRATVFREGK 60

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
           +YE  +  G    P+   G   +  GT VTF P   IF+    ++YDT+  R+RELSFLN
Sbjct: 61  VYEQEYEKGKAMYPVKQIGET-DKRGTMVTFHPDKTIFTQTIEYSYDTIAARMRELSFLN 119

Query: 204 SSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
             + I+L D+R      E        + G++ FV +LD+ ++ ++   I ++  +  I +
Sbjct: 120 KGITITLTDRRDVNEKGEFASEIFHSQEGLKEFVRFLDKGRESIISHVISMEHEKGEIPV 179

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S    K K  + G
Sbjct: 180 EVALVYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADSSGLLDKLKFEITG 239

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ L  +LEE+P +AKIIV
Sbjct: 240 DDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPNDAKIIV 299

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +KV+ A+  R AA++AR++ +RK VL    LPGKL+DCSE+DP K E++LVEGDSAGG+A
Sbjct: 300 QKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTA 359

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           KQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 360 KQGRDRMFQAILPLRGKILNVEKAMPHKVFENEEIRNIFTALGVTIGTE 408


>gi|18916429|dbj|BAB85507.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916444|dbj|BAB85512.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916451|dbj|BAB85514.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916455|dbj|BAB85515.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916458|dbj|BAB85516.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916462|dbj|BAB85517.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|19979605|dbj|BAB88758.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979607|dbj|BAB88759.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 303

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/305 (60%), Positives = 228/305 (74%), Gaps = 2/305 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PLVV G A    GTEVTFL S D F   ++++ TL+HRLREL+FLNS V I+L D 
Sbjct: 121 DAVAPLVVVGDAPGKRGTEVTFLASPDTFKNIEYDFATLEHRLRELAFLNSGVNIALSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDPR 338
           +PDP+
Sbjct: 299 VPDPK 303


>gi|332800579|emb|CBY89779.1| GyrB protein [Flavobacterium antarcticum]
          Length = 412

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 188/409 (45%), Positives = 271/409 (66%), Gaps = 6/409 (1%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
            D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ +   + ++G 
Sbjct: 1   VDIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNKMVSTVFKDGK 60

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
           +YE  +  G    P+   G   +  GT  TF P   IF+    F+YDTL  R+RELS+LN
Sbjct: 61  VYEQEYSRGKAVYPVKQIGET-DKRGTRQTFYPDDSIFTQTIEFSYDTLAARMRELSYLN 119

Query: 204 SSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
             + I+ +DKR      E ++       G++ ++ YLD +++P++   I +   +  I +
Sbjct: 120 KGITITFVDKRETDEKGEFKQEVFHSDEGLKEYIRYLDGNREPIISHVISMDSDKGEIPV 179

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + G
Sbjct: 180 EVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISG 239

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +A+IIV
Sbjct: 240 DDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARIIV 299

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+A
Sbjct: 300 QKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTA 359

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           KQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 360 KQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTIGTE 408


>gi|94264175|ref|ZP_01287972.1| DNA topoisomerase II:ATP-binding region, ATPase-like [delta
           proteobacterium MLMS-1]
 gi|94269557|ref|ZP_01291494.1| DNA topoisomerase II:ATP-binding region, ATPase-like [delta
           proteobacterium MLMS-1]
 gi|93451169|gb|EAT02088.1| DNA topoisomerase II:ATP-binding region, ATPase-like [delta
           proteobacterium MLMS-1]
 gi|93455433|gb|EAT05631.1| DNA topoisomerase II:ATP-binding region, ATPase-like [delta
           proteobacterium MLMS-1]
          Length = 614

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/617 (27%), Positives = 283/617 (45%), Gaps = 58/617 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M+    ++ YD   I+ L  L+ ++ RP MYIG     S    G++ ++ EV+DN +DE 
Sbjct: 1   MT--SPSAVYDESKIKTLSSLEHIRMRPGMYIGRLGNGSHPDDGIYILLKEVIDNGVDEF 58

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I + L  D   T+ D GRGIP      E +S        ++ G K+N  +++ 
Sbjct: 59  IMGAGRAIDIALADDNVVTIRDYGRGIPLGK-LVECVS-------VINTGAKYNTDAFQF 110

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNA+SS   +   R+G      F  G+L N    +G +    GT V F 
Sbjct: 111 SVGLNGVGTKAVNAMSSRFVVTSFRDGEFARAKFARGVLVN--EESGRSREPNGTLVEFR 168

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P  ++F    FN D ++ RL+  S+LN+ + ++   +          + + G+   ++  
Sbjct: 169 PDGEMFPEYAFNRDFIRRRLKRYSYLNAGLTLNFDGES--------FYSENGLLDLLASE 220

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                       R +      +++ A    DGY E+   F N     +GGTHLS  R  L
Sbjct: 221 TSGTSLYEPIYHREK------TVEFAFSHTDGYGESYFSFVNGTYTAEGGTHLSAFREGL 274

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + +  Y  K            G D REG    +++K+ +P F SQTK KL ++++R  +
Sbjct: 275 LKGVNEYAGK---------KFDGADVREGVVGAVAVKVREPIFESQTKNKLGNADIRGEI 325

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--------VRDAARRARDLTRRKGVLDIA 408
            + V + +SA+L ++   A++++ K+  ++          ++A  +AR +  +   L   
Sbjct: 326 VTAVREAVSAFLYKNTDIAELVIDKIQQSARVRKELQHVRKEAKAKARKVALKIPQLKDC 385

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
                         +++ +FL EG SA GS    R    QA+  L+GK LNV       +
Sbjct: 386 KYHPAPGKP-SPAGRENMVFLTEGQSASGSIVSARDPMTQAVFSLKGKPLNVFGQPMALL 444

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             + E+  ++ AL          I +LR+ KIII TDADVDG HIR LLLTFF     SL
Sbjct: 445 YKNDEMYNIMRAL-----DVEESIGRLRFDKIIIATDADVDGLHIRNLLLTFFLHYFESL 499

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD-----SKGVIS 583
           +  G +YI++ P+Y +   +   Y   E+   +     +   +     +       G IS
Sbjct: 500 VKRGHVYILETPIYRVRNKEQTFYCYTEKERREADQKLAGRGKTRRPVEVTRFKGLGEIS 559

Query: 584 KNDLRNFIDDALKIDKL 600
             + + FI   +++ ++
Sbjct: 560 PKEFKQFIGSEMRLQQV 576



 Score = 38.1 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 77/279 (27%), Gaps = 45/279 (16%)

Query: 543 GITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
            + +       + +       +    L +        K   +  +   F+ +       I
Sbjct: 356 RVRKELQHVRKEAKAKARKVALKIPQLKDCKYHPAPGKPSPAGRENMVFLTEGQSASGSI 415

Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661
                   +  + QAV S      +     ++L  K     N +     +   G +    
Sbjct: 416 VS-----ARDPMTQAVFSLKGKPLNVFGQPMALLYKNDEMYNIMRALDVEESIGRLRFDK 470

Query: 662 ILVKRI--ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
           I++       G+  + +L    +  F S  KR     +E     I  +            
Sbjct: 471 IIIATDADVDGLHIRNLLLTFFLHYFESLVKRGHVYILE---TPIYRVRNKEQTFYCYTE 527

Query: 720 CSLLDTIFSIGRKG-----ISMQRYKGLGE-------------MNASQLWETTLNPDTRS 761
               +    +  +G     + + R+KGLGE             M                
Sbjct: 528 KERREADQKLAGRGKTRRPVEVTRFKGLGEISPKEFKQFIGSEM---------------R 572

Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800
           L +V I   S+   +    MG     RRE+I  + L   
Sbjct: 573 LQQVDIDTLSEVPRVLEFYMGKNTPSRREYIMSH-LVVD 610


>gi|2353016|gb|AAB92593.1| gyrase beta subunit [Shewanella pealeana]
          Length = 419

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 240/422 (56%), Positives = 316/422 (74%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L++ I+R+G +YE  + +G+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS++ F+   F++D L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIAPIGEAT-KTGTEIRFWPSTETFTDVLFHFDILAKRVRELSFLNSGVGIRLVDER-- 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           + R+    Y+GGI AFV YL+ +K P+ +        R++ I++++AM+WNDG+ EN+ C
Sbjct: 118 DNRDEFFKYEGGISAFVDYLNVNKTPVNKEVFHFCQEREDGITVEVAMQWNDGFQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R ALTR + +Y+E+   +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVS EV+S V+  + + L  +L+EHP EAK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSIEVKSAVDQTMGEQLGDYLKEHPNEAKLIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG +D+   PGKLADC E+DP  SE+ + EGDSAGGSAK GR+R+NQAILPL+G
Sbjct: 298 REMTRRKGAVDLGGPPGKLADCQEKDPGLSEMNIEEGDSAGGSAKPGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKMLSSQE+ TLITALG GI   +  +      K    TDADV G+HIRT
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGICVVNMTVLHAGGKKEDSTTDADVGGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|305666738|ref|YP_003863025.1| DNA topoisomerase IV subunit B [Maribacter sp. HTCC2170]
 gi|88708962|gb|EAR01196.1| DNA topoisomerase IV subunit B [Maribacter sp. HTCC2170]
          Length = 619

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/614 (28%), Positives = 281/614 (45%), Gaps = 54/614 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +  S Y  D+I+ L   + ++ RP MYIG     S    G++ ++ E LDN IDE + G 
Sbjct: 1   MAQSQYTEDNIRSLDWKEHIRLRPGMYIGKLGDGSSADDGIYILLKETLDNCIDEFVMGA 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +++  D    V D GRGIP            +V+ ++++ GGK++ +++K S GL
Sbjct: 61  GKTIEISI-KDNIVRVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKKSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS+ +++  RE  I    F  G+L +            GT V+F P   
Sbjct: 112 NGVGTKAVNALSSFFEVQSSRENKIKTAQFEQGVLVSEEGPV-ETSKRKGTRVSFTPDET 170

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +  + ++  L+   +LN  + I    ++           + G++  +   +  +
Sbjct: 171 IFKKYKYRNEYVERMLKNYVYLNPGLTIVFNGEK--------FHSENGLKDLLEDNNNAE 222

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L    I ++G    ++I         Y E    F N      GGTH +  R AL R I
Sbjct: 223 DLLYP-IIHLKGEDIEVAIT---HSKTQYSEEYHSFVNGQHTTQGGTHQAAFREALVRTI 278

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------R 353
             +  K++ +          D R+   S ++IK+ +P F SQTK KL S+++       R
Sbjct: 279 RDFYGKNYDAS---------DIRKSIISAIAIKVMEPVFESQTKTKLGSTDMGGDFPTVR 329

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA-- 408
           + +  FV   L  +L ++P  ++ + +K++ A   R      R       +K  L     
Sbjct: 330 TYINDFVGRYLDNYLHKNPDTSEKLQRKIMMAEKERKELSGIRKLARDRAKKASLHNKKL 389

Query: 409 -SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                 L D       +S LF+ EGDSA GS  + R    QA+  LRGK LN        
Sbjct: 390 RDCRVHLGDMKNDRRLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGMSKKI 449

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR LL+TFF +  P 
Sbjct: 450 VYENEEFNLLQAALNI-----EESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFPE 504

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI    LYI++ PL+ +   K   Y   ++  +  L   +   EI  F    G IS ++ 
Sbjct: 505 LIKENHLYILQTPLFRVRNKKETIYCYSDDERKGALDKLTGKPEITRF-KGLGEISPDEF 563

Query: 588 RNFIDDALKIDKLI 601
           ++FI + ++++ ++
Sbjct: 564 QHFIGEDIRLEPVM 577


>gi|148616482|gb|ABQ96984.1| GyrB [Nocardiopsis xinjiangensis]
          Length = 421

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/424 (48%), Positives = 288/424 (67%), Gaps = 9/424 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L + I+R+G+++   +    + 
Sbjct: 2   EVIMTVLHAGGKFDDKSYAVSGGLHGVGVSVVNALSTALDVEIRRDGHVWRQRY---DVT 58

Query: 157 NPLV-VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            P   V G   ++TGT++TF P  DIF    F+Y+TL  R++E++FLN  + I++ D+R 
Sbjct: 59  RPGELVRGEEVSETGTQITFWPDPDIFETITFSYETLSRRMQEMAFLNKGLSITIRDERP 118

Query: 216 PEPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
               +     T  Y  G+  +V++++  K+P   S I  +   + I+ ++AM+WN  Y  
Sbjct: 119 EFIDDGPVVNTYHYVNGLSDYVNHINAKKEPAHASIISFEEEGEGIAAEIAMQWNQSYTS 178

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +V  F N I   +GGTH  G R+ALT  I  Y       ++ + ++ GDD REG T+++S
Sbjct: 179 SVHTFANTINTAEGGTHEEGFRTALTALINRYARDQKLLREKEDNLTGDDIREGLTAIIS 238

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ DP+F  QTK KL ++E +S V+   N+ L  WLE +P EAK IV K   A+  R A
Sbjct: 239 VKLTDPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWLERNPGEAKDIVSKASQAARARVA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+ARDLTRRK +L+  SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR   +QAIL
Sbjct: 299 ARQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPHHQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           P+RGKILNVE++R D++L + E+  +ITALGTGI +D FD +KLRYHKII+MTDADVDG+
Sbjct: 359 PIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHED-FDASKLRYHKIILMTDADVDGS 417

Query: 512 HIRT 515
           HIRT
Sbjct: 418 HIRT 421


>gi|148762381|dbj|BAF63892.1| DNA topoisomerase IV subunit B [Halobacillus trueperi]
          Length = 407

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 185/406 (45%), Positives = 257/406 (63%), Gaps = 9/406 (2%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH+++E++DNAIDE+L G+ + +TVTL+ DGS +V D  RG+PT +H + G    EVI
Sbjct: 6   GLHHLVHEIVDNAIDEALSGFGEKMTVTLHKDGSVSVQDEARGMPTGMH-KTGKPTPEVI 64

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNP 158
           +T LHAGGKF Q  YK SGGLHGVG SVVNALS WL++ I R+G  +   F N G+    
Sbjct: 65  LTVLHAGGKFGQGGYKSSGGLHGVGASVVNALSEWLEVHICRDGEKFYQRFENGGVPVTS 124

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G A   TGT + F P   IFS+  FN++TL  RLRE +FL    +I L+D+R  E 
Sbjct: 125 LENKG-ATRKTGTTIRFKPDPSIFSMTKFNFETLSERLREAAFLLKGFRIILVDER-KET 182

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y  G+ +FV YL+  K  L    +  +GS   I  D A ++NDG+ EN+L F N
Sbjct: 183 VREEYQYDDGLVSFVEYLNEEKDTLHS-VVSFEGSHSGIEADFAFQFNDGFAENILSFVN 241

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP- 337
           N+  KDGGTH SG ++A+TR    Y  ++   K   +++ G+D REGFT+V+S+++P+  
Sbjct: 242 NVRTKDGGTHESGAKTAITRVFNDYARRAQLLKDKDKNLEGNDIREGFTAVISVRIPEEL 301

Query: 338 -RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
            +F  QTK KL +SE RS V+  V + LS +LEE+P  A +++KK + A   R+AAR+AR
Sbjct: 302 LQFEGQTKSKLGTSEARSAVDGIVAEQLSYFLEENPDVASMLIKKAIKAKEAREAARKAR 361

Query: 397 D--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           +   + +K       L GKL     ++ KK+EL+LVEGDSAGGSAK
Sbjct: 362 EDARSGKKKKRKDTLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAK 407


>gi|19979609|dbj|BAB88760.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979611|dbj|BAB88761.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/304 (60%), Positives = 227/304 (74%), Gaps = 2/304 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PLVV G A    GTEVTFL S D F   ++++ TL+HRLREL+FLNS V I+L D 
Sbjct: 121 DAVAPLVVVGDAPGKRGTEVTFLASPDTFKNIEYDFATLEHRLRELAFLNSGVNIALSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV +LDR+KK ++ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKHLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDP 337
           +PDP
Sbjct: 299 VPDP 302


>gi|198250539|gb|ACH85251.1| DNA gyrase subunit B [Brevibacillus brevis]
          Length = 421

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 232/424 (54%), Positives = 302/424 (71%), Gaps = 20/424 (4%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------- 155
           HAGGKF+Q SYKVSGGLHGVGVS VN LS  LKL I R+G ++ M F+ G+         
Sbjct: 1   HAGGKFDQNSYKVSGGLHGVGVSCVNGLSKLLKLTIHRDGKVHFMEFVRGVPQNREIEMR 60

Query: 156 ----DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
                +P+ V G   +  GTEV F    +IF+  +F+Y+ L  R+RELSFLN+ V I L 
Sbjct: 61  DGVAVSPIKVIGDT-DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVNIKLS 119

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWN 266
           D+R+ +       ++GG   FV Y+++ K  L  +  +  G R      NI++D++M+WN
Sbjct: 120 DQRTGKE--EVFAFEGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNITVDVSMQWN 177

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D Y+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+++   +KK K  + GDD REG 
Sbjct: 178 DAYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDEQEFAKKAKVGINGDDMREGL 237

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T VLS+K+P+P+FSSQTK+KLVSSEVR  VE  V   L+ +L+E P +AKII  K+++A+
Sbjct: 238 TCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAA 297

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R+AAR+ARDLTRRKG++D   L  KLADC E+DP   EL++VEGDSAGGSAKQGR R+
Sbjct: 298 RAREAARKARDLTRRKGIMDGLGLSAKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRK 357

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPLRGK+LNVE+ARF+KMLSS++I TLI   GT IG D F++ KLRYH+IIIMTDA
Sbjct: 358 FQAILPLRGKVLNVEKARFEKMLSSEQITTLIATPGTSIGPDEFNVEKLRYHRIIIMTDA 417

Query: 507 DVDG 510
           DVDG
Sbjct: 418 DVDG 421


>gi|18147159|dbj|BAB83060.1| DNA gyrase subunit B [Alcanivorax sp. OM-2]
          Length = 395

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 238/398 (59%), Positives = 304/398 (76%), Gaps = 4/398 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+ D PL V G+   
Sbjct: 1   KFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLEVVGNTE- 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            +GT + F PS + FS   F+YD L  RLRELSFLNS V+I L D+R+ E       Y+G
Sbjct: 60  TSGTSIHFRPSGETFSNIKFHYDILAKRLRELSFLNSGVRIHLKDERNGEE--EVFEYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           G+ AFVSYL+ +K PL Q          D I++++AM+WND Y EN+ CFTNNIPQ+DGG
Sbjct: 118 GLSAFVSYLNTNKTPLNQVFHFQFDREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R ALTR + +Y++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + +    +L E+P EAK I +K++DA+  RDAAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKAAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           KMLSSQE+GTLITALG GIG+D +++ KLRYH+IIIMT
Sbjct: 358 KMLSSQEVGTLITALGCGIGRDEYNVEKLRYHRIIIMT 395


>gi|148536436|gb|ABQ85770.1| DNA gyrase subunit B [Aliivibrio wodanis]
          Length = 404

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 243/406 (59%), Positives = 312/406 (76%), Gaps = 4/406 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G I++ ++ +G    PL V G+
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGEIFQQTYCHGEPQAPLAVVGT 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
                 T++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     
Sbjct: 61  TDTTG-TKIRFWPSEQTFTNVEFVYDILAKRLRELSFLNSGVSIILQDMR-EEDKSDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282
           ++GGI+AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ
Sbjct: 119 FEGGIQAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGG HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 179 RDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           ARFDKM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 ARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 404


>gi|190148850|gb|ACE63400.1| DNA gyrase B subunit [Pseudonocardia hydrocarbonoxydans]
          Length = 434

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/437 (47%), Positives = 280/437 (64%), Gaps = 19/437 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SY VSGGLHGVGVSVVNALS  L   I  +G ++   +   I  
Sbjct: 1   EVIMTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSVALDAEIHTDGFVWRQHYARSIP- 59

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G A   TG+ +T+    DIF    +N +T++ RL+E++FLN  + + L D+R+ 
Sbjct: 60  GPLRK-GEATTRTGSSITYWADPDIFETTTYNLETIRRRLQEMAFLNKGLTMVLRDERNG 118

Query: 217 EPREI----------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           E                       Y  G+E FV++L++ K P+ +  +   G  D  +++
Sbjct: 119 EANHDAEEPDAEGYVAKTVENVYCYPNGLEDFVAHLNKSKDPIHKKLVSFSGEADGHALE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K    ++ GD
Sbjct: 179 VAMQWNSGYTESVYTFANTINTHEGGTHEEGFRSALTSTVNRYARAQKLLKDKDPALSGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAKIIV 
Sbjct: 239 DIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLTDWFERNPAEAKIIVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP +SE+++VEGDSAGGSAK
Sbjct: 299 KSVQSAQARAAARKARELVRRKSATDIGGLPGKLADCRSTDPVRSEVYIVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILP+RGKI+NVE+AR D++L + E+  +ITALGTGI  D FD++KLRYHK+
Sbjct: 359 SGRDSMFQAILPIRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLSKLRYHKV 417

Query: 501 IIMTDADVDGAHIRTLL 517
           ++MTDADVDG+HIRTLL
Sbjct: 418 VLMTDADVDGSHIRTLL 434


>gi|255012823|ref|ZP_05284949.1| DNA topoisomerase IV subunit B [Bacteroides sp. 2_1_7]
 gi|301307810|ref|ZP_07213766.1| putative DNA topoisomerase IV, B subunit [Bacteroides sp. 20_3]
 gi|300834153|gb|EFK64767.1| putative DNA topoisomerase IV, B subunit [Bacteroides sp. 20_3]
          Length = 621

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/620 (28%), Positives = 286/620 (46%), Gaps = 58/620 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESL 57
           S   Q + Y+ D I+ L  ++ +++RP MYIG     S    G++ ++ EVLDN+IDE +
Sbjct: 6   STIQQPTEYNDDDIKTLDWMEHIRRRPGMYIGKLGDGSYADDGIYVLLKEVLDNSIDEYM 65

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I VT+  +G+  V D GRG+P     +        + ++++ G K++ K++K S
Sbjct: 66  MGYGKSIEVTI-EEGTVAVRDYGRGVPLGKVVD--------VSSKMNTGAKYDSKAFKKS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+GVG+  VNALSS+  +   R+G    + +   I+          G   GT+V F+P
Sbjct: 117 VGLNGVGIKAVNALSSYFLITSYRDGECKRVEYSKAIVTEE-SDIQPTGEANGTQVFFVP 175

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             +IF    +  + ++  L+   FLNS + I    KR         + + G+   ++   
Sbjct: 176 DREIFKDYHYKDEFIEGLLKNYVFLNSGLSIIYNGKR--------FYSRNGLVDLLNENM 227

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
                 +   I ++G      I++ +  ++ Y E    F N      GGTHLS  + ++ 
Sbjct: 228 T--TEPLYPIIHLKGED----IEVVITHSNQYGEEYYSFVNGQHTTQGGTHLSAFKESVG 281

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS--- 354
           R I  Y  K+F            D R G  + +SIK+ +P F SQTK KL S ++     
Sbjct: 282 RVIKEYYNKNFEYS---------DIRAGIVAAISIKVEEPVFESQTKTKLGSKDIGPDGP 332

Query: 355 --------VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
                    +++ +++ L   +E   L  K I++   +         +      +K  L 
Sbjct: 333 TVAKFIGDFIKNDLDNYLHKNMETSELLLKKILESEKE-RKAIAGVTKLARERAKKANLH 391

Query: 407 IA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                     L D      ++S +F+ EGDSA GS  + R+   QA+  LRGK LN    
Sbjct: 392 NKKLRDCRIHLTDSKGDLLEESSIFITEGDSASGSITKSRNPNYQAVFSLRGKPLNSYGL 451

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL    G     +  LRY+K+II TDADVDG HIR LL+TFF +
Sbjct: 452 TKKIVYENEEFNLLQAALNIEDG-----LEGLRYNKVIIATDADVDGMHIRLLLITFFLQ 506

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI    +YI++ PL+ +   +   Y   EE     +     + EI  F    G IS
Sbjct: 507 FFPDLIKRNHVYILQTPLFRVRNRQKTWYCYSEEERLAAIAAAGKNPEITRF-KGLGEIS 565

Query: 584 KNDLRNFIDDALKIDKLIKD 603
            ++ ++FI   +++D +   
Sbjct: 566 PDEFKHFIGKDIRLDPVTMK 585



 Score = 38.5 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 73/252 (28%), Gaps = 37/252 (14%)

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
           N+ L +      DSKG + +       +       + K   PN+   F  +      +  
Sbjct: 392 NKKLRDCRIHLTDSKGDLLEESSIFITEGDSASGSITKSRNPNYQAVFSLRGKPLNSYGL 451

Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFS 684
                      + L   LN      E    G   N  I+            +L  +    
Sbjct: 452 TKKIVYENEEFNLLQAALNI-----EDGLEGLRYNKVIIATDADVDGMHIRLLLITFFLQ 506

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           F     +   N +      +  +               L  I + G K   + R+KGLGE
Sbjct: 507 FFPDLIK--RNHVYILQTPLFRVRNRQKTWYCYSEEERLAAIAAAG-KNPEITRFKGLGE 563

Query: 745 MNASQ----------LWETTLNPDTRSLLRVKITDASQADDLFSRL---MGDEVEPRREF 791
           ++  +          L     +P   ++ +    D  +       L   MG     R+ F
Sbjct: 564 ISPDEFKHFIGKDIRL-----DPV--TMKK---EDLVK-----DMLEFYMGKNTMERQNF 608

Query: 792 IQENSLPSALDI 803
           I +N L    D+
Sbjct: 609 IIDN-LVVEEDV 619


>gi|18916435|dbj|BAB85509.1| DNA gyrase subunit B [Bradyrhizobium liaoningense]
          Length = 303

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/305 (59%), Positives = 228/305 (74%), Gaps = 2/305 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNSDNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 DAVAPLKVVGDAPGRRGTEVTFLASTETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK ++ +PI ++ + + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSAANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDPR 338
           +PDP+
Sbjct: 299 VPDPK 303


>gi|88802816|ref|ZP_01118343.1| DNA topoisomerase IV subunit B [Polaribacter irgensii 23-P]
 gi|88781674|gb|EAR12852.1| DNA topoisomerase IV subunit B [Polaribacter irgensii 23-P]
          Length = 619

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 188/670 (28%), Positives = 306/670 (45%), Gaps = 72/670 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS   +   Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN+IDE 
Sbjct: 1   MSQETK---YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILVKEVLDNSIDEY 57

Query: 57  LEGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           + G    I +++   GS  TV D GRGIP            +V+ ++++ GGK++ K++K
Sbjct: 58  VMGAGKNIEISIQ--GSKVTVRDFGRGIPLGK-------VVDVV-SKMNTGGKYDSKAFK 107

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTE 172
            S GL+GVG   VNALSS+ ++   R+G      F  G     L        +    GT+
Sbjct: 108 KSVGLNGVGTKAVNALSSFFRVESSRDGKSASAEFSQGN----LEQQDFLEESSRRKGTK 163

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V+F+P  +IF    F  + +   L+   +LN  + I    ++         F + G++  
Sbjct: 164 VSFIPDEEIFKKYKFRNEYVAKMLKYYVYLNPGLTIIFNGEK--------FFSENGLKDL 215

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           +   +  +  L    I ++G    ++I         Y E    F N      GGTH +  
Sbjct: 216 LEDNNHQEDMLYP-IIHLKGDDIEVAIT---HSKTQYSEEYHSFVNGQHTTQGGTHQTAF 271

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R A+ + I  +  K+F +          D R+   S ++IK+ +P F SQTK KL S+++
Sbjct: 272 REAIVKTIREFYGKNFEAS---------DVRKSIISAIAIKVMEPIFESQTKTKLGSTDM 322

Query: 353 -------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRK 402
                  R+ +  F+   L  +L ++P  + ++ +K++ A   R      R       +K
Sbjct: 323 GGKLPTVRTYINDFLKTKLDNYLHKNPAVSDMLQRKIMQAEKERKELSGIRKLAKDRAKK 382

Query: 403 GVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
             L           L D  + +  ++ LF+ EGDSA GS  + R+   QA+  L+GK LN
Sbjct: 383 SSLHNKKLRDCRIHLGDIKKENYLETTLFITEGDSASGSITKSRNVNTQAVFSLKGKPLN 442

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
                   +  ++E   L  AL    G     I  LRY+ I+I TDADVDG HIR LL+T
Sbjct: 443 SFGLSKKIVYENEEFNLLQAALNIEDG-----IEDLRYNNIVIATDADVDGMHIRLLLIT 497

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF +  P LI  G LYI++ PL+ +   K   Y   +E     +       EI  F    
Sbjct: 498 FFLQFFPELIKEGHLYILETPLFRVRNKKQTFYCYSQEEKNAAIAKLKGKPEITRF-KGL 556

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           G IS N+  +FI D +++D ++ D      +  IEQ +    +  ++  +    +   L 
Sbjct: 557 GEISPNEFVHFIGDDIRLDPVMLD-----KEMSIEQMLE--FYMGKNTPDRQKFIIENLK 609

Query: 640 NRLNFIAEKS 649
             L+ I ++ 
Sbjct: 610 VELDTIEDEV 619


>gi|86130199|ref|ZP_01048799.1| DNA topoisomerase IV subunit B [Dokdonia donghaensis MED134]
 gi|85818874|gb|EAQ40033.1| DNA topoisomerase IV subunit B [Dokdonia donghaensis MED134]
          Length = 618

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 179/661 (27%), Positives = 294/661 (44%), Gaps = 63/661 (9%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
           Q + Y+ D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN IDE + G  
Sbjct: 3   QETQYNEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILVKEVLDNCIDEFVMGAG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I +++  +    V D GRGIP            +V+ ++++ GGK++ +++K S GL+
Sbjct: 63  KTIEISIQGE-KVIVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKKSVGLN 113

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN-PLVVTGSAGNDTGTEVTFLPSSD 180
           GVG   VNALS++ ++   R+G      F  G L N  L          GT+V+F+P S+
Sbjct: 114 GVGTKAVNALSNYFRVESTRDGKSASAEFERGELTNQDL--LDETSRRRGTKVSFVPDSE 171

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    F  + ++  ++   +LN  + I    ++         F + G++  +S      
Sbjct: 172 IFKNFKFRSEYVERLIKNYVYLNPGLTIVFNGEK--------FFSENGLKDLLSESIAEG 223

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L    I ++G    ++I         Y E    F N      GGTH +  R ++ R I
Sbjct: 224 DRLY-DIIHLKGEDIEVAIT---HSKTQYSEEYHSFVNGQHTTQGGTHQAAFRESIVRTI 279

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------R 353
             +  K++ +          D R+   S +SIK+ +P F SQTK KL S+++       R
Sbjct: 280 REFYGKNYEAS---------DIRKSIVSAISIKVMEPVFESQTKTKLGSTDMGGDLPTVR 330

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA-- 408
           + +  F+   L  +L ++P  A  + +K+L A   R      R       +K  L     
Sbjct: 331 TYINDFLKTALDNFLHKNPPVADALQRKILQAERERKDLSGIRKLAKERAKKASLHNKKL 390

Query: 409 -SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                 L D  +    ++ LF+ EGDSA GS  + R    QA+  L+GK LN        
Sbjct: 391 RDCRIHLTDSKKARNLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNSYGLSKKI 450

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   L  AL          I  LRY+ I+I TDADVDG HIR LL+TFF +  P 
Sbjct: 451 VYENEEFNLLQAALNI-----EESIEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFPE 505

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LYI++ PL+ +   K   Y   ++   D +       EI  F    G IS ++ 
Sbjct: 506 VIKEGHLYILETPLFRVRNKKETIYCYSDQEKADAMAKLGAKPEITRF-KGLGEISPDEF 564

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
           + FI + +          P      +    +   +  ++  +    +   L   L+ + E
Sbjct: 565 QFFIGEDM-------RLAPVMLDKALMIEELLSFYMGKNTPDRQKFIIENLKVELDRVVE 617

Query: 648 K 648
           +
Sbjct: 618 E 618



 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 62/173 (35%), Gaps = 15/173 (8%)

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
             ++  N L       E       NN  I       G+  + +L    +  F    + I 
Sbjct: 452 YENEEFNLLQAALNIEESIEDLRYNNIVIATDADVDGMHIRLLLITFFLQFF---PEVIK 508

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS--QLW 751
              +      +  +    + I         D +  +G K   + R+KGLGE++    Q +
Sbjct: 509 EGHLYILETPLFRVRNKKETIYCYSDQEKADAMAKLGAK-PEITRFKGLGEISPDEFQFF 567

Query: 752 --ETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
             E     D R L  V +  A   ++L S  MG     R++FI EN L   LD
Sbjct: 568 IGE-----DMR-LAPVMLDKALMIEELLSFYMGKNTPDRQKFIIEN-LKVELD 613


>gi|148793376|gb|ABR12752.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 397

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 237/399 (59%), Positives = 309/399 (77%), Gaps = 4/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G   + TG
Sbjct: 1   HNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI
Sbjct: 60  TRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+DGGTH
Sbjct: 119 RAFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           LSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 LSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 397


>gi|150009930|ref|YP_001304673.1| DNA topoisomerase IV subunit B [Parabacteroides distasonis ATCC
           8503]
 gi|256838705|ref|ZP_05544215.1| DNA topoisomerase IV, B subunit [Parabacteroides sp. D13]
 gi|262382766|ref|ZP_06075903.1| DNA topoisomerase IV subunit B [Bacteroides sp. 2_1_33B]
 gi|298374287|ref|ZP_06984245.1| DNA topoisomerase IV [Bacteroides sp. 3_1_19]
 gi|149938354|gb|ABR45051.1| DNA topoisomerase IV subunit B [Parabacteroides distasonis ATCC
           8503]
 gi|256739624|gb|EEU52948.1| DNA topoisomerase IV, B subunit [Parabacteroides sp. D13]
 gi|262295644|gb|EEY83575.1| DNA topoisomerase IV subunit B [Bacteroides sp. 2_1_33B]
 gi|298268655|gb|EFI10310.1| DNA topoisomerase IV [Bacteroides sp. 3_1_19]
          Length = 621

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/620 (28%), Positives = 286/620 (46%), Gaps = 58/620 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESL 57
           S   Q + Y+ D I+ L  ++ +++RP MYIG     S    G++ ++ EVLDN+IDE +
Sbjct: 6   STIQQPTEYNDDDIKTLDWMEHIRRRPGMYIGKLGDGSYADDGIYVLLKEVLDNSIDEYM 65

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I VT+  +G+  V D GRG+P     +        + ++++ G K++ K++K S
Sbjct: 66  MGYGKSIEVTI-EEGTVAVRDYGRGVPLGKVVD--------VSSKMNTGAKYDSKAFKKS 116

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+GVG+  VNALSS+  +   R+G    + +   I+          G   GT+V F+P
Sbjct: 117 VGLNGVGIKAVNALSSYFLITSYRDGECKRVEYSKAIVTEE-SDIQPTGEANGTQVFFVP 175

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             +IF    +  + ++  L+   FLNS + I    KR         + + G+   ++   
Sbjct: 176 DREIFKDYHYKDEFIEGLLKNYVFLNSGLSIIYNGKR--------FYSRNGLVDLLNENM 227

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
                 +   I ++G      I++ +  ++ Y E    F N      GGTHLS  + ++ 
Sbjct: 228 T--TEPLYPIIHLKGED----IEVVITHSNQYGEEYYSFVNGQHTTQGGTHLSAFKESIG 281

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS--- 354
           R I  Y  K+F            D R G  + +SIK+ +P F SQTK KL S ++     
Sbjct: 282 RVIKEYYNKNFEYS---------DIRAGIVAAISIKVEEPVFESQTKTKLGSKDIGPDGP 332

Query: 355 --------VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
                    +++ +++ L   +E   L  K I++   +         +      +K  L 
Sbjct: 333 TVAKFIGDFIKNDLDNYLHKNMETSELLLKKILESEKE-RKAIAGVTKLARERAKKANLH 391

Query: 407 IA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                     L D      ++S +F+ EGDSA GS  + R+   QA+  LRGK LN    
Sbjct: 392 NKKLRDCRIHLTDSKGDLLEESSIFITEGDSASGSITKSRNPNYQAVFSLRGKPLNSYGL 451

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL    G     +  LRY+K+II TDADVDG HIR LL+TFF +
Sbjct: 452 TKKIVYENEEFNLLQAALNIEDG-----LEGLRYNKVIIATDADVDGMHIRLLLITFFLQ 506

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI    +YI++ PL+ +   +   Y   EE     +     + EI  F    G IS
Sbjct: 507 FFPDLIKRNHVYILQTPLFRVRNRQKTWYCYSEEERLAAIAAAGKNPEITRF-KGLGEIS 565

Query: 584 KNDLRNFIDDALKIDKLIKD 603
            ++ ++FI   +++D +   
Sbjct: 566 PDEFKHFIGKDIRLDPVTMK 585



 Score = 38.5 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 73/252 (28%), Gaps = 37/252 (14%)

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
           N+ L +      DSKG + +       +       + K   PN+   F  +      +  
Sbjct: 392 NKKLRDCRIHLTDSKGDLLEESSIFITEGDSASGSITKSRNPNYQAVFSLRGKPLNSYGL 451

Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFS 684
                      + L   LN      E    G   N  I+            +L  +    
Sbjct: 452 TKKIVYENEEFNLLQAALNI-----EDGLEGLRYNKVIIATDADVDGMHIRLLLITFFLQ 506

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
           F     +   N +      +  +               L  I + G K   + R+KGLGE
Sbjct: 507 FFPDLIK--RNHVYILQTPLFRVRNRQKTWYCYSEEERLAAIAAAG-KNPEITRFKGLGE 563

Query: 745 MNASQ----------LWETTLNPDTRSLLRVKITDASQADDLFSRL---MGDEVEPRREF 791
           ++  +          L     +P   ++ +    D  +       L   MG     R+ F
Sbjct: 564 ISPDEFKHFIGKDIRL-----DPV--TMKK---EDLVK-----DMLEFYMGKNTMERQNF 608

Query: 792 IQENSLPSALDI 803
           I +N L    D+
Sbjct: 609 IIDN-LVVEEDV 619


>gi|269799078|gb|ACZ43817.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 364

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/366 (56%), Positives = 271/366 (74%), Gaps = 4/366 (1%)

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G+   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSG
Sbjct: 1   GHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSG 60

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS
Sbjct: 61  GLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPS 119

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ 
Sbjct: 120 HETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNV 178

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 179 NKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALT 238

Query: 298 RQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           R + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 239 RTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 298

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLAD
Sbjct: 299 EQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLAD 358

Query: 417 CSERDP 422
           C E+DP
Sbjct: 359 CQEKDP 364


>gi|7407138|gb|AAF61925.1| DNA gyrase B [Klebsiella pneumoniae subsp. pneumoniae]
          Length = 394

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 238/397 (59%), Positives = 306/397 (77%), Gaps = 4/397 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L+L I+R+  +++  + +G+   PL VTG   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DK 59

Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+G
Sbjct: 60  TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 118 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KL
Sbjct: 178 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+
Sbjct: 238 VSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 298 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           MLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 358 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 394


>gi|19979613|dbj|BAB88762.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979615|dbj|BAB88763.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 303

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/305 (60%), Positives = 229/305 (75%), Gaps = 2/305 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGI
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHASRVDVILNADNSVTVRDDGRGIPVDIHKGEGI 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PLVV G A    GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I+L D 
Sbjct: 121 DAVAPLVVVGDAPGKRGTEVTFLASTETFKNIEYDFATLEHRLRELAFLNSGVNIALSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y GG+E FV YLDR+KK L+ +PI ++   + I ++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMHYSGGVEEFVKYLDRNKKALVPTPIMVRSEANGIGVEAALWWNDSYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVK 298

Query: 334 MPDPR 338
           +PDP+
Sbjct: 299 VPDPK 303


>gi|110612683|gb|ABG78304.1| GyrB [uncultured bacterium]
          Length = 396

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 229/398 (57%), Positives = 299/398 (75%), Gaps = 3/398 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVG+SVVNALS  L+L I R+G I+   +  G    PL VTG A   
Sbjct: 1   FDASSYKVSGGLHGVGISVVNALSDQLQLTIYRDGKIHRQEYHLGTPLAPLAVTG-ASAQ 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GT + F PS+ IF+   F Y+    RLRELSFLNS V+I L+D+R  +       ++GG
Sbjct: 60  RGTTIRFKPSAQIFTHIQFTYEIFAKRLRELSFLNSGVRIELVDERENKT--DVFQHEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++AFV YL+R + P+  S +  +     ++I+++++WND Y E++ C+TNNIPQKDGGTH
Sbjct: 118 LQAFVKYLNRSRTPIHDSIMWFKTQDGPVTIEVSLQWNDSYQESMFCYTNNIPQKDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G RSALTR +  Y+EK   +KKDK +  GDD REG T++LS+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRSALTRTLNDYIEKETSAKKDKLATTGDDAREGLTAILSVKLPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+ +VE+ V   L  +L EHP +AK IV K+++A+  R+AAR+AR++T RKG LD+A
Sbjct: 238 SSEVKGIVEAAVGAKLQDFLLEHPQDAKAIVAKIIEAARAREAARKAREMTWRKGALDVA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SE+F+VEGDSAGGSAKQGR R  QAILPL+G+ILNVE++RFDKM
Sbjct: 298 GLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGRILNVEKSRFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           L+S E+GTLITALG GIG+D FDI KLRYH++IIMTDA
Sbjct: 358 LASAEVGTLITALGCGIGKDDFDIAKLRYHRVIIMTDA 395


>gi|254507508|ref|ZP_05119642.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus 16]
 gi|219549578|gb|EED26569.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus 16]
          Length = 553

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 188/507 (37%), Positives = 272/507 (53%), Gaps = 8/507 (1%)

Query: 83  IPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
           +P D+H E+GIS  E+IMT+LHAGGKF+  +YK SGGLHGVG+SVVNALS  +++ +KR+
Sbjct: 1   MPVDIHPEKGISGVELIMTKLHAGGKFSNDNYKFSGGLHGVGISVVNALSKRVEVTVKRQ 60

Query: 143 GNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           G ++E++F +G     L VTG+ G+ +TGT V F P +  F    F+   L + LR  + 
Sbjct: 61  GQVHEIAFEHGNAVTELTVTGTCGHRNTGTSVHFWPDAKYFDSYKFSALRLVNNLRAKAV 120

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           L   ++I+  DK + E  +                     P            +  +   
Sbjct: 121 LCPGLEITFSDKVNDEEHKWYYEDGLKDYLAEGVKGYEVLPAEPYIGEFTAETEMATW-A 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
            +   +G       + N +P K GGTH++GLR  L   +  + E      +    + GDD
Sbjct: 180 VIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
             +  + VLS+KM DP+F+ QTKE+L S +  + V   V D  S WL E P  A+ + + 
Sbjct: 239 IFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSGVVKDAFSLWLNEKPQLAEQLAEV 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            +  +       RA     RK V    +LPGKL DCS +D  ++E+F VEGDSAGGSAKQ
Sbjct: 299 CIANAH---RRMRASKKVVRKKVASGPALPGKLTDCSVQDLNRTEIFFVEGDSAGGSAKQ 355

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
            R RE QA++PLRGKILN      D++L+SQE+  +  ++  GI  D+ +++ LRY KI 
Sbjct: 356 ARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI--SVALGIDPDNDNLDGLRYGKIC 413

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY I  GK + Y  D++  E 
Sbjct: 414 ILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPPLYRIDCGKEVFYALDDDEKEG 473

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLR 588
            L   S  +        KG+   N L+
Sbjct: 474 VLERLSKKKAKINVQRFKGLGEMNPLQ 500



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D  Q  ++   L+G 
Sbjct: 475 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDNEQTMEMMDMLLGK 534

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 535 KRADDRRSWLQTN 547


>gi|146325105|gb|ABQ22201.1| DNA gyrase subunit B [Vibrio alginolyticus]
          Length = 393

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 233/395 (58%), Positives = 308/395 (77%), Gaps = 3/395 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIM 393


>gi|203283965|ref|YP_002221705.1| DNA topoisomerase IV, B subunit [Borrelia duttonii Ly]
 gi|201083408|gb|ACH92999.1| DNA topoisomerase IV, B subunit [Borrelia duttonii Ly]
          Length = 598

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 193/642 (30%), Positives = 282/642 (43%), Gaps = 55/642 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++ + YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKKNFYDESKIVTLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIVDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +    D   TV D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GKEIVIK-REDNVITVRDYGRGIPLGK-------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  REGN +E  F  G L N     G +    GT + FL  ++
Sbjct: 112 NGVGTKAVNALSSKFLIRSIREGNFFEAVFSKGNLIN--TTEGKSDEQNGTYIEFLADTE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D LQ R    + LN  ++I+  D+              G+  F+    +++
Sbjct: 170 IFGKYKYSEDFLQRRFFHYACLNKGLEINYNDQ--------IFRSDNGLLDFIRAEIKYE 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDFVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTSDGGTHQTGFREGFARAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LSIK+ DP F SQTK KL + E R  +   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSIKIKDPIFESQTKNKLGNVETRGNIAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC--- 417
              +   L +    AK I  KV+D   +R      R    ++    I+    KL DC   
Sbjct: 328 QRLILEILYKDKTLAKTIESKVIDNERLRKELSSVRKE-AKERAKKISFKIPKLKDCKFH 386

Query: 418 ---SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                     + +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNEKSVHSDATMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNRSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      L+ NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTYFEDLVLNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           +I++ PL+ +    +  Y   EE  +  L+   L           G IS N+ + FID A
Sbjct: 502 HILETPLFRVRNKSATIYCYSEEDKQKALLK--LKNPEVTRFKGLGEISPNEFKGFIDVA 559

Query: 595 LKIDKLIKDFYPNHDKTFIEQA-VISGVFNCESDQEINVSLA 635
              +  +      + K   EQ     G    E    I  +L 
Sbjct: 560 ---NIKLTKVDLVNIKEIKEQLGFYMGPNTPERRNFIMENLI 598


>gi|313204490|ref|YP_004043147.1| DNA topoisomerase type IIia subunit b region 2 domain protein
           [Paludibacter propionicigenes WB4]
 gi|312443806|gb|ADQ80162.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Paludibacter propionicigenes WB4]
          Length = 624

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 185/626 (29%), Positives = 285/626 (45%), Gaps = 65/626 (10%)

Query: 1   MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAI 53
           M + +  S    Y   +I  L+GL+ V++RP MYIG     S    G++ ++ EVLDN I
Sbjct: 1   MEEFVNESQLVDYGDSNIITLEGLEHVRRRPGMYIGKLGDGSHVDDGIYVLLKEVLDNCI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE   G    I V +  DG   V D GRGIP      E +S    IM   + GGK++ K+
Sbjct: 61  DEYRMGAGKAIDVRV-QDGHVEVRDFGRGIPLGKM-VEAVS----IM---NTGGKYDSKA 111

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           +K S GL+GVG   VNALSS   ++  R+G   +  F  G L +   +      + GT +
Sbjct: 112 FKKSVGLNGVGTKAVNALSSTFVVQSFRDGQSRKAEFQKGKLVSDSDIFADNT-ERGTLI 170

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F+P + +F    +  D ++  LR  ++LN+ + I+   K+           K G+   +
Sbjct: 171 YFVPDNTLFENYLYKEDYIETMLRNYAYLNTGLTINFNGKKI--------LSKNGLTDLL 222

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +     +       I ++G      I++A   +D Y E    F N      GGTH S  R
Sbjct: 223 NENITAQPLY--PIIHLKGED----IEIAFTHSDQYGEEYYSFVNGQHTTQGGTHQSAFR 276

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            A+ R I  +  K+         +   D R G  + ++I + +P F SQTK KL S ++ 
Sbjct: 277 EAVARTIKEFYSKN---------MEVGDIRNGIIAAVAISVEEPIFESQTKTKLGSRDMA 327

Query: 354 -------SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDL 398
                    +  F+   L  +L  +   A I+++K+ D+   R         A  RA+ +
Sbjct: 328 KDGVSVNKFISDFLKKELDNYLHRNSETANILLQKIQDSEKERKAIAGVTKLARERAKKV 387

Query: 399 TRRKGVLDIA----SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
                 L       +      D        S +F+ EGDSA GS  + R    QA+  LR
Sbjct: 388 NLHNKKLRDCRVHFNDSLTKDDAKNAAIHNSCIFITEGDSASGSITKSRDVNTQAVFSLR 447

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK LN        +  ++E   L  AL    G     +  LRY+K+I+ TDADVDG HIR
Sbjct: 448 GKPLNSYGLTKKIVYENEEFNLLQAALNIEEG-----VENLRYNKVIVATDADVDGMHIR 502

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
            LL+TFF +  P LI  G +YI++ PL+ +   K   Y   EE     +     + EI  
Sbjct: 503 LLLITFFLQFFPDLIKKGHVYILQTPLFRVRNKKETFYCYSEEERLASMAKVGSNPEITR 562

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKL 600
           F    G IS ++ ++FI   +++D++
Sbjct: 563 F-KGLGEISPDEFKHFIGKDMRLDQV 587


>gi|148971297|gb|ABR20186.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 198/421 (47%), Positives = 285/421 (67%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF    YKVSGGLHGVG++VVNALS +  + ++R+G  Y  SF  G+  
Sbjct: 1   EVIMTVLHAGGKFENDVYKVSGGLHGVGLTVVNALSEFTIVTVRRDGKEYRQSFSRGLPT 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L + G A   TGT + F P ++IFS Q+F+  +L+ RLR+  FLN  + I+L+D+R  
Sbjct: 61  GGLEIIGEAE-GTGTMIRFKPDAEIFSSQNFDSGSLKERLRDTVFLNPGISITLVDERFG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
              E   + + G+  F++YL++ K+  +   I  + +   I ++ A+++N GY E V  F
Sbjct: 120 LNEEEKYYSEKGVADFIAYLNKGKEA-ITEIISGKKAEGGIVVEFAIQYNTGYEEKVESF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTHL+G  SALT+ +++Y+ ++  S K    + G+D REG   V+S+ M D
Sbjct: 179 VNTIRTDEGGTHLTGFHSALTKAVSNYISRNKASAKQAERISGEDVREGLAGVVSVMMQD 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F  QTKEKL + +V+++VES V   LS + EEHP + ++I++K   A+  R++AR+AR
Sbjct: 239 PEFEGQTKEKLGNIQVKALVESCVYQQLSRYFEEHPQDIRMIIEKASSAANARESARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +L R+K + D   LPGKL DC E DP+++ELF+VEG+SAGGS+KQGR ++ QA+LPLRGK
Sbjct: 299 ELARKKSIFDDNILPGKLTDCIESDPERTELFIVEGESAGGSSKQGRDKKIQAVLPLRGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+A  +K+  + EI  +I A GTGI +  F+ + +RY KIIIMTDADVDG+HIRTL
Sbjct: 359 ILNVEKASSEKIFDNAEIKAMIAAFGTGINES-FNPDNIRYRKIIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|18147167|dbj|BAB83064.1| DNA gyrase subunit B [Alcanivorax sp. PR-1]
          Length = 393

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 236/396 (59%), Positives = 304/396 (76%), Gaps = 3/396 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+ + PL V G     
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSETLKLTIRRHGKVHEQVYHDGVPEKPLEVVG-TTES 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F PSS  F+   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG
Sbjct: 60  SGTAIRFRPSSGTFNNIQFHYDILAKRLRELSFLNSGVRIHLVDERSGDE--DVFEYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + AFV+YL+++K  L Q         D IS+++AM+WND Y EN+ C+TNNIPQ+DGGTH
Sbjct: 118 LSAFVTYLNQNKNSLNQVFHFQVDREDGISVEVAMQWNDSYQENIFCYTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + +Y+EK    K++K +  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAALTRTLNNYMEKEGFLKREKANPSGDDAREGLTAIISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + +    +L EHP+E+K IV+K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKSAVEQTMTERFQDFLLEHPVESKNIVQKIIDAARARDAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D +D +KLRYH+IIIMT
Sbjct: 358 LSSQEVATLITALGCGIGRDEYDADKLRYHRIIIMT 393


>gi|239735441|dbj|BAH70487.1| gyrase B subunit [Cardinium endosymbiont of Oligonychus ilicis]
          Length = 462

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 222/460 (48%), Positives = 304/460 (66%), Gaps = 9/460 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS+ L++ + R   IY+  +  GI    +   GS     GT V F P 
Sbjct: 1   GLHGVGVSCVNALSAHLEVTVYRNEKIYKQEYAQGIPLYSVKEIGSTA-LRGTTVHFTPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
           S IF+   +N  T+ +RL+EL++LN  +++ L D R  +    P E     +GG+  FVS
Sbjct: 60  SSIFTTTIYNLHTIVNRLQELAYLNVGLKMQLKDHRERDDQGNPFEQKFHSEGGLLEFVS 119

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD  K  +M +PI ++G ++NI + +AM +N GY E V+ + NNI   +GG H++G + 
Sbjct: 120 HLDSTKVSIMPAPILVEGEKNNIIVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFKR 179

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY +KS   +K K  +IGDD REG T+V+S+K+ +P+F  QT+ KL ++EV+ 
Sbjct: 180 ALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTRTKLGNAEVQG 239

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES V + L  +LEEHP EAK+I+ KV  A+  R AAR+AR++ +RK VL   SLPGKL
Sbjct: 240 AVESCVAEVLHYYLEEHPKEAKLIINKVTVAAQARQAARKAREMVQRKNVLMSNSLPGKL 299

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCSERDP   ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  K+  ++++
Sbjct: 300 ADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQTYKIYDNEQV 359

Query: 475 GTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +ITALG  +G      +  ++KLRYHKI+IMTDADVDG+HIRTL+LTFFFR M  +I 
Sbjct: 360 RNMITALGVSMGTDGTDQATHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYMREVIE 419

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            G LYI  PPLY + R K   Y   E   E ++   SL +
Sbjct: 420 KGHLYIASPPLYLVKRDKEEHYCWTELEKEKWVKELSLKD 459


>gi|255689861|ref|ZP_05413536.1| DNA topoisomerase 4 subunit B [Bacteroides finegoldii DSM 17565]
 gi|260624466|gb|EEX47337.1| DNA topoisomerase 4 subunit B [Bacteroides finegoldii DSM 17565]
          Length = 625

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 175/655 (26%), Positives = 291/655 (44%), Gaps = 58/655 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLE 58
           DN     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 10  DNNDAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I + +  +   +V D GRGIP        I A  +    L+ GGK++ K++K S 
Sbjct: 70  QAGKKIEIIVEENLRVSVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFKKSV 121

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  ++R  R+G +   +F  G L      T +   D GT + F P 
Sbjct: 122 GLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGELLAD--ETQNTEEDNGTYIFFEPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I     R           + G+   ++    
Sbjct: 180 NTLFLNYSFKPEFIETMLRNYTYLNTGLAIIYNGHRI--------LSRNGLVDLLNDNMT 231

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   I ++G      I++A      Y E    F N      GGTH S  +  + R
Sbjct: 232 A--TGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 285

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV--- 355
            I  +  K+             D R G  + +++ + +P F SQTK KL S+ +      
Sbjct: 286 TIKEFFNKNMDYT---------DIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMAPGGIT 336

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA-----RDLTRRKGVLDIASL 410
           V  +V D +   ++    +   I + +       +  R+A     +    R    ++ + 
Sbjct: 337 VNKYVGDFIKLEVDNFLHKNADIAETIQQKIQESEKERKAIAGVTKLARERAKKANLHNR 396

Query: 411 PGKLADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             +       DP      ++S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 KLRDCRIHLNDPKGKGLEEESCIFITEGDSASGSITKSRDVTTQAVFSLRGKPLNSFGLT 456

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF + 
Sbjct: 457 KKVVYENEEFNLLQAALNIEDG-----LDGLRYNKVIVATDADVDGMHIRLLMITFFLQF 511

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   +E   + +   S + EI  F    G IS 
Sbjct: 512 FPDLIKKGHVYILQTPLFRVRNKKKTIYCYSDEERINAIEELSPNPEITRF-KGLGEISP 570

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 571 DEFKHFIGKDMRLEQVTLR-KTDAVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 624


>gi|146325103|gb|ABQ22200.1| DNA gyrase subunit B [Vibrio alginolyticus]
          Length = 393

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 234/395 (59%), Positives = 308/395 (77%), Gaps = 3/395 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+
Sbjct: 60  TQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 239 SEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 SSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 393


>gi|239735449|dbj|BAH70491.1| gyrase B subunit [Cardinium endosymbiont of Tetranychus urticae red
           form C]
          Length = 462

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 224/460 (48%), Positives = 305/460 (66%), Gaps = 9/460 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS VNALS+ L + + R G IYE  +  GI   P+   G   +  GT V F P 
Sbjct: 1   GLHGVGVSCVNALSAHLAVTVYRNGKIYEQEYAQGIPQYPVKEVG-TTDLRGTTVHFTPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
           S IF+   +N  T+ +RL+EL++LN  +++ L D+R  +    P   T   +GG+  FV+
Sbjct: 60  SSIFTTTVYNLHTIVNRLQELAYLNVGLKMQLEDRRERDEAGNPFGQTFHSQGGLLEFVA 119

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD  K  +M +PI ++G ++N+ + +AM +N GY E V+ + NNI   +GG H++G R 
Sbjct: 120 HLDSSKVSIMPAPILVEGEKNNVVVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFRR 179

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY +KS   +K K  +IGDD REG T+V+S+K+ +P+F  QTK KL ++EV+ 
Sbjct: 180 ALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQG 239

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES V + L  +LEE P EAK+I+ KV+ A+  R AAR+AR++ +RK VL   SLPGKL
Sbjct: 240 AVESCVGEVLHYYLEEPPKEAKLIINKVMVAAQARQAARKAREMVQRKNVLMSNSLPGKL 299

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCSERDP   ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  K+  ++++
Sbjct: 300 ADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQVYKIYDNEQV 359

Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +ITALG  +G D  D     +KLRYHKI+IMTDADVDG+HIRTL+LTFFFR M  +I 
Sbjct: 360 RNMITALGVTMGTDGNDQAIHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRCMRDIIE 419

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
              LYI  PPLY + R K  QY   +   E  +   SL +
Sbjct: 420 KAHLYIASPPLYLVKRDKEEQYCWTDSEKEASVTQFSLKD 459


>gi|325969896|ref|YP_004246087.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
           [Spirochaeta sp. Buddy]
 gi|324025134|gb|ADY11893.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Spirochaeta sp. Buddy]
          Length = 600

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 166/608 (27%), Positives = 268/608 (44%), Gaps = 52/608 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +  ++YD   IQ L  L+ ++KRP MYIG     +    G++ ++ EV+DN++DE + GY
Sbjct: 1   MAKTTYDESKIQTLSALEHIRKRPGMYIGRLGNGTHVDDGIYILLKEVVDNSVDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +    +    V D GRGIP        +    +I T    G K++   ++ S GL
Sbjct: 61  GSRILIR-RKECEVRVRDYGRGIPLGKV----VDCVSIINT----GAKYSDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +   REG  +  +F  GIL      TG      GTEV F P  +
Sbjct: 112 NGVGTKAVNALSSHFMVTSFREGKYHSATFSQGILLK--EETGETKEADGTEVVFTPDPE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F    +N D +  RL   ++LN+ + +    K              G+   +       
Sbjct: 170 LFGDYAYNEDFIFSRLWSYAYLNTGLCLDYNGKV--------YKSAHGLLDLLDKEVG-- 219

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              + + I  Q  +   ++         Y EN   + N     DGGTH S  +  + + I
Sbjct: 220 TEGLYTIIHYQAKQMEFALT---HVAGSYGENYFSYVNGQHTTDGGTHQSAFKEGILKGI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             + +K++            D REG    +++K+ DP F SQTK KL ++E+R+ + + V
Sbjct: 277 NEHFKKNW---------APQDVREGVVGAIAVKVKDPVFESQTKNKLSNTEIRTWIVNEV 327

Query: 361 NDGLSAWL----EEHPLEAKIIVKKVLDASMVRD----AARRARDLTRRKGVLDIASLPG 412
            D +  +L    EE     + I+        + +    A   A+ ++     L       
Sbjct: 328 RDAIVDFLLKNAEEAQKLYQKIINNEALRKELNEVKKGARESAKKVSLNIPKLKDCKYHL 387

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
             +     + + S +FL EGDSA G+  + R    QA+  LRGKI+NV   +  ++  + 
Sbjct: 388 GQSTTHPDECEHSMIFLTEGDSASGTITKTRDVMTQAVFSLRGKIVNVYGKKKTEIYKNA 447

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E+  ++ ALG   G     +  LRY K+II TDAD DG HIR LL+T+F      L+  G
Sbjct: 448 ELYNMMVALGIENG-----VEGLRYGKVIIATDADTDGFHIRNLLMTYFLTYFEDLVFAG 502

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            LYI++ PL+ +       Y   E   +D      +           G I   +   FI 
Sbjct: 503 RLYILETPLFRVRNKNQTVYCYSEHQRDDATAQ--IKNSEVTRFKGLGEIDPKEFGQFIG 560

Query: 593 DALKIDKL 600
           + +++  +
Sbjct: 561 EDMRLIPV 568


>gi|126035360|gb|ABN72433.1| gyrase B subunit [Vibrio parahaemolyticus AQ4037]
          Length = 395

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 235/397 (59%), Positives = 311/397 (78%), Gaps = 3/397 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GG
Sbjct: 60  TGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           I+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 119 IQAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGT 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 HLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+
Sbjct: 239 VSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDL 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 358

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           MLSSQE+ TLITALG GIG+D ++ +KLRYH III+T
Sbjct: 359 MLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIILT 395


>gi|56409822|emb|CAH65720.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 244/432 (56%), Positives = 316/432 (73%), Gaps = 22/432 (5%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV---------NALSSWLKLRIKREGNIYE 147
           EVIMT LH GGKF+  SYKV         S+          NALS  ++L IKR+G I++
Sbjct: 1   EVIMTVLHGGGKFDDNSYKV---------SLGVHGVGVSVVNALSEKVELTIKRKGEIFQ 51

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
             + +G+   PL V G    +TGT + F PS + F+  +F+Y+ L  RLREL FLNS V 
Sbjct: 52  QIYHHGVPQAPLAVIGKTE-ETGTRIRFWPSEETFTNIEFHYEILAKRLRELFFLNSGVW 110

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRW 265
           I   D+R  E +     ++GGI AFV +L+R+K P  Q           D I++++AM+W
Sbjct: 111 IKFTDER-EEDKSDHFMFEGGIRAFVEHLNRNKTPXHQKIXYFDXTREEDGITVEVAMQW 169

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ E V CFTNNIPQ+DGGTHL+G R ALTR + ++++K   SKK + +  GDD REG
Sbjct: 170 NDGFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREG 229

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +++ LS +L E+P EAKI+  K++DA
Sbjct: 230 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDA 289

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+ARD+TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R
Sbjct: 290 ARAREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNR 349

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           +NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTD
Sbjct: 350 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 409

Query: 506 ADVDGAHIRTLL 517
           ADVDG+HIRTLL
Sbjct: 410 ADVDGSHIRTLL 421


>gi|307939304|gb|ADN95843.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 434

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 210/435 (48%), Positives = 293/435 (67%), Gaps = 21/435 (4%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF++ SYKVSGGLHGVGVS VNALS+ LK+ ++R G+ YE  +  GI    +  
Sbjct: 1   VLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDVKE 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PE 217
            G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R       
Sbjct: 61  VGLSE-EHGTEVQFLPDATIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLEGGV 119

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
            R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV  +
Sbjct: 120 FRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVYSY 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+ +
Sbjct: 180 VNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKVQE 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+A+
Sbjct: 240 PQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARKAK 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLRGK
Sbjct: 300 DMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLRGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLRYHKII 501
           ILNVE+A+  ++L ++EI  +ITALG                G      + +KLRYHK+I
Sbjct: 360 ILNVEKAQEHRILENEEIKNMITALGVSFNERKSLAFTTDDDGTESGPLNFSKLRYHKVI 419

Query: 502 IMTDADVDGAHIRTL 516
           IMTDADVDG+HIRTL
Sbjct: 420 IMTDADVDGSHIRTL 434


>gi|2196806|gb|AAB80820.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 245/422 (58%), Positives = 317/422 (75%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L A  KF   SY VSGG HGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLMALKKFEDNSYDVSGGWHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS + FS  +F+++ L  R+RELSFLNS V I LID+R  
Sbjct: 61  APIREIGDAT-KTGTEIRFWPSENTFSNIEFHFEILAKRVRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--ELFKYEGGISAFVDYLNRNKTPINKDVSHFIQERDDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G R+ALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRTALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML SQE+ TLITALG GIG+D ++ +K RY  I +MTDA VDG+HI T
Sbjct: 358 KILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYQNIFMMTDAYVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|257168212|gb|ACV40239.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168216|gb|ACV40241.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168220|gb|ACV40243.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168222|gb|ACV40244.1| DNA gyrase subunit B [Yersinia enterocolitica]
          Length = 279

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/281 (54%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +       Y+GGI+AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|164608600|gb|ABY62591.1| DNA gyrase beta subunit [Aliivibrio salmonicida]
 gi|164608602|gb|ABY62592.1| DNA gyrase beta subunit [Aliivibrio salmonicida]
          Length = 398

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 239/400 (59%), Positives = 307/400 (76%), Gaps = 4/400 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G+   PL V G   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDT 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     ++GG
Sbjct: 60  TGTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFMFEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           I+AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG
Sbjct: 119 IKAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+K
Sbjct: 179 AHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDK 238

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 239 LVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALD 298

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 299 IAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 358

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           KM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 KMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 398


>gi|27544680|dbj|BAC55035.1| DNA gyrase B subunit [Fluoribacter gormanii]
          Length = 389

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 237/392 (60%), Positives = 303/392 (77%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E  + NG+ + P+  TG A   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLTVRRHGKIHEQHYRNGVPEAPMAETGDAT-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ FS  +F+YD L  RLRELS+LNS V I L D+RS   R+ T  Y+GGI+
Sbjct: 60  TQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERS--QRQDTFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K  ++ +   +   +DNI ++L+M+WND Y E + CFTNNIPQ+DGGTH++
Sbjct: 118 AFVEHLNKNKTVIIPTVFSMSAEKDNIVVELSMQWNDSYQETLYCFTNNIPQRDGGTHMA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRTLNNYIESEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+SVVES V +  + +L E+P  AK IV K++DA+  R+AARRAR++TRRKG LDIA L
Sbjct: 238 EVKSVVESSVAEKFNDFLLENPACAKAIVAKIIDAARAREAARRAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG D +D +K+RYH+III
Sbjct: 358 SQEVATLITALGCGIGPDEYDPDKVRYHRIII 389


>gi|325104897|ref|YP_004274551.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Pedobacter saltans DSM 12145]
 gi|324973745|gb|ADY52729.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Pedobacter saltans DSM 12145]
          Length = 635

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 179/622 (28%), Positives = 280/622 (45%), Gaps = 63/622 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M++   + +Y  DSI+ L   + ++ RP MYIG     S    G++ ++ E++DN+IDE 
Sbjct: 1   MAE--LSVNYSEDSIRSLDWKEHIRLRPGMYIGKLGDGSAYDDGIYVLLKEIVDNSIDEF 58

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSY 114
           + G    I +++  D    V D GRGIP             VI     ++ GGK++ K++
Sbjct: 59  VMGAGKTIDISVY-DHKIYVRDYGRGIPLGK----------VIDCVSKINTGGKYDSKAF 107

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + S GL+GVG   VNALSS   ++  R+G   +  F  G L              GT + 
Sbjct: 108 QKSVGLNGVGTKAVNALSSTFTVQSYRDGKSKKAEFTKGELIGDNPEI-ETTQRNGTSIH 166

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F+P   IF    F  + +++ +    FLN+ + I+  +++         F + G+   + 
Sbjct: 167 FVPDDTIFRNFRFIPEFVENMIWNYVFLNAGLTINFNNQK--------YFSEKGLHDLLI 218

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
                +       I ++G      I++AM     Y E    F N      GGTH    R 
Sbjct: 219 RNTDAETNRYP-IIHLKGED----IEIAMTHGQQYGEEYYSFVNGQHTTQGGTHQQAFRE 273

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS----- 349
           A+ + I  + +K F +          D R    + +SI++ +P F SQTK KL S     
Sbjct: 274 AVVKTIREFYKKEFDAS---------DIRASIVAAISIRVQEPVFESQTKTKLGSLNVGP 324

Query: 350 --SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLT 399
               VR+ +  FV   L  +L +HP  A  ++K++L +   R         A  RA+  +
Sbjct: 325 DGPTVRTFINDFVKKELDDYLHKHPDVADGLLKRILQSERERKDIAGIKKLANERAKKAS 384

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
                L             E + KK+ LF+ EGDSA GS  + R    Q +  L+GK LN
Sbjct: 385 LHNRKLRDCKWHLDDEKQPEENRKKTTLFITEGDSASGSITKARDVNTQGVFSLKGKPLN 444

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
                   +  ++E   L  AL    G     ++ LRY+ I+I TDADVDG HIR LLLT
Sbjct: 445 SFGLTKKVVYENEEFNLLQHALNIEDG-----LDGLRYNNIVIATDADVDGMHIRLLLLT 499

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF +  P L+  G +YI++ PL+ +   K   Y   +E     +       EI  F    
Sbjct: 500 FFLQFFPDLVKTGHVYILQTPLFRVRNKKETIYCYSDEERVLAINKLGNKPEITRF-KGL 558

Query: 580 GVISKNDLRNFIDDALKIDKLI 601
           G IS N+   FI + +++D +I
Sbjct: 559 GEISPNEFEGFIGEDMRLDPVI 580


>gi|227121273|gb|ACP19328.1| GyrB [Leptospirillum ferriphilum]
          Length = 405

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 199/410 (48%), Positives = 273/410 (66%), Gaps = 7/410 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D PL 
Sbjct: 1   TVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLA 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G      GT + F P   I     F++DTL HR REL+FLN  + I L D+ +   RE
Sbjct: 61  VFGETT-QRGTIIRFWPDMTIMETDQFSFDTLAHRFRELAFLNPVLTIHLKDEET--LRE 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNN 279
            T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL F NN
Sbjct: 118 ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLGFANN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P P+F
Sbjct: 178 IHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIPGPQF 235

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A+DL 
Sbjct: 236 EGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLA 295

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILN
Sbjct: 296 KRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILN 355

Query: 460 VERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           VE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADV
Sbjct: 356 VEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADV 405


>gi|325954943|ref|YP_004238603.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
           [Weeksella virosa DSM 16922]
 gi|323437561|gb|ADX68025.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Weeksella virosa DSM 16922]
          Length = 624

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 171/625 (27%), Positives = 282/625 (45%), Gaps = 62/625 (9%)

Query: 1   MSDNI-------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVL 49
           M++N            Y  D+I+ L   + ++ RP MYIG     S    G++ ++ E++
Sbjct: 1   MTENKLPLEQDSSTVKYTEDNIRTLDWREHIRMRPGMYIGKLGDGSSQDDGIYILLKEII 60

Query: 50  DNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           DN+IDE + G    I + L  +   T+ D GRGIP        + A     ++++ GGK+
Sbjct: 61  DNSIDEFVMGTGKTIEIHLREE-EVTIRDYGRGIPLGKM----VDAV----SKMNTGGKY 111

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           + +++K S GL+GVG   VNALSS+ +++  R+G      F  G +              
Sbjct: 112 DSQAFKKSVGLNGVGTKAVNALSSYFRVQSVRDGRTRIAEFSKGEIMQQ-EEEKDTTLRR 170

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++TF+P   IF    F  + +   L+   +LN  ++I    +          + + G+
Sbjct: 171 GTKITFIPDKTIFLHFKFRKEYIVKMLKNYVYLNPGLRIIFNGEE--------FYSENGL 222

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  +       + ++   I ++G    I+I      +  Y E    F N      GGTHL
Sbjct: 223 KDLLQDNIE--EEVIYDVIHLKGEDIEIAIT---HSSKSYSETYYSFVNGQNTTQGGTHL 277

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +  + A+ + +  +  K+             D R+     +SIK+ +P F SQTK KL S
Sbjct: 278 AAFKEAVVKTLREFYNKN---------YDPSDIRKSIIGAISIKVIEPVFESQTKTKLGS 328

Query: 350 SEV-------RSVVESFVNDGLSAWLEEHPLEAKII---VKKVLDASMVRDAARRARDLT 399
           +++       R+ V  F+   L  +L ++P  A+ I   +K+           R+     
Sbjct: 329 TDMGPDMVTVRTFVNDFIKTNLDNYLHKNPDVAQSIERKIKQSETERKELSGIRKLARER 388

Query: 400 RRKGVLDIASLPGKLADCSERDPK---KSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +K  L    L       +    +    S LF+ EGDSA GS  + R  E QA+  LRGK
Sbjct: 389 AKKVSLHNKKLRDCRQHYNNPKDEARLDSTLFITEGDSASGSITKSRDVETQAVFSLRGK 448

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
            LN        +  ++E   L  AL          +  LRY+ ++I TDADVDG HIR L
Sbjct: 449 PLNSYGLTKKIVYENEEFNLLQAALNI-----EDSLEDLRYNNVVIATDADVDGMHIRLL 503

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           L+TFF +  P LI  G LYI++ PL+ +   K  +Y   EE     L     + EI  F 
Sbjct: 504 LITFFLQFFPELIREGHLYILQTPLFRVRNKKETRYCYTEEERLKALEELGKNPEITRF- 562

Query: 577 DSKGVISKNDLRNFIDDALKIDKLI 601
              G IS ++ ++FI   ++++ ++
Sbjct: 563 KGLGEISPDEFKHFIGKDIRLEPVM 587



 Score = 38.1 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 3/77 (3%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +L  +    F  +  R     +      +  +    +          L  +  +G K
Sbjct: 499 HIRLLLITFFLQFFPELIRE--GHLYILQTPLFRVRNKKETRYCYTEEERLKALEELG-K 555

Query: 733 GISMQRYKGLGEMNASQ 749
              + R+KGLGE++  +
Sbjct: 556 NPEITRFKGLGEISPDE 572


>gi|257168326|gb|ACV40299.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/281 (55%), Positives = 202/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H+EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHEEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DQTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIRAFVEYLNKNKTPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|149370482|ref|ZP_01890171.1| DNA topoisomerase IV, subunit B [unidentified eubacterium SCB49]
 gi|149356033|gb|EDM44590.1| DNA topoisomerase IV, subunit B [unidentified eubacterium SCB49]
          Length = 616

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 177/614 (28%), Positives = 283/614 (46%), Gaps = 54/614 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           + ++ Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN+IDE + G 
Sbjct: 1   MSDTKYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNSIDEFVMGA 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + +  D    V D GRGIP            +V+ ++++ GGK++ +++K S GL
Sbjct: 61  GKTIEIRI-KDKIVKVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKKSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS+ K+   R+       F  G L         +    GT+VTF+P   
Sbjct: 112 NGVGTKAVNALSSFFKVESHRDNQSKFAEFSQGELKED-SSIEQSSKRKGTKVTFIPDEL 170

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +  + ++  LR   +LN  + I    ++           + G++  +      +
Sbjct: 171 IFKNYKYRNEYVEKMLRYYVYLNPGLTIDFNGEK--------FLSENGLKDLLEDNMTQE 222

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L    I ++G+   +++         Y E    F N      GGTHL+  R ++ + I
Sbjct: 223 DMLYP-VIHLKGNDIEVALT---HSKTQYSEEYHSFVNGQNTTQGGTHLAAYRESVVKTI 278

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------R 353
             +  K++ +          D R+   S +SIK+ +P F SQTK KL S+++       R
Sbjct: 279 REFYGKNYDAS---------DIRKSIVSAISIKVMEPVFESQTKTKLGSTDMGGDLPTVR 329

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA-- 408
           + +  FV   L  +L ++P  A+II +K+L A   R      R       +K  L     
Sbjct: 330 TYINDFVKTHLDNFLHKNPAVAEIIQRKILTAERERKELSGIRKLAKDRAKKANLHNKKL 389

Query: 409 -SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                 L D  +    +S LF+ EGDSA GS  + R    QA+  L+GK LN        
Sbjct: 390 RDCRIHLGDTKKERNLESTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNCYGLTKKI 449

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   L  AL          I  LRY+ I+I TDADVDG HIR LL+TFF +  P 
Sbjct: 450 VYENEEFNLLQAALNI-----EESIEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFPE 504

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LYI++ PL+ +   K   Y   E+     +       EI  F    G IS ++ 
Sbjct: 505 VIKEGHLYILQTPLFRVRNKKKTIYCYSEDERRSAMEELKPKPEITRF-KGLGEISPDEF 563

Query: 588 RNFIDDALKIDKLI 601
            +FI + +++D ++
Sbjct: 564 VHFIGEDIRLDPVM 577



 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 54/184 (29%), Gaps = 37/184 (20%)

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
             ++  N L       E       NN  I       G+  + +L    +  F    + I 
Sbjct: 451 YENEEFNLLQAALNIEESIEDLRYNNIVIATDADVDGMHIRLLLITFFLQFF---PEVIK 507

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ---- 749
              +      +  +      I                +    + R+KGLGE++  +    
Sbjct: 508 EGHLYILQTPLFRVRNKKKTIYCYSEDERRSA-MEELKPKPEITRFKGLGEISPDEFVHF 566

Query: 750 ------LWETTLNPDTRSLL--RVKITDASQADDLFSRL---MGDEVEPRREFIQENSLP 798
                 L     +P    +L  ++ I            L   MG     R+EFI EN L 
Sbjct: 567 IGEDIRL-----DP---VMLDKQMSIE---------ELLKFYMGKNTPDRQEFIIEN-LK 608

Query: 799 SALD 802
             LD
Sbjct: 609 VELD 612


>gi|150024741|ref|YP_001295567.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771282|emb|CAL42751.1| Topoisomerase IV subunit B [Flavobacterium psychrophilum JIP02/86]
          Length = 618

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 178/626 (28%), Positives = 280/626 (44%), Gaps = 56/626 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
            +   Y+ D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN IDE + G 
Sbjct: 2   QEQDQYNEDNIRSLDWKEHIRLRPGMYIGKLGDGSSPDDGIYILLKEVLDNCIDEFVMGA 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+  D   TV D GRGIP            +V+ ++++ GGK++ K++K S GL
Sbjct: 62  GKTIEVTM-KDKMVTVRDYGRGIPLGK-------VIDVV-SKMNTGGKYDSKAFKKSVGL 112

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDTGTEVTFLPSS 179
           +GVG   VNALS + ++   R+       F  G L   L      +    GT+V+F+   
Sbjct: 113 NGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGNLT--LEEDIIESTKRKGTKVSFIADE 170

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    +  + +   L+   +LN+ + I    ++         F   G++  +      
Sbjct: 171 AIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGLKDLLEENIAE 222

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +  +    I + G    I+I         Y E    F N      GGTHL   R ++ + 
Sbjct: 223 EDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHLGAFRESIVKT 278

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------- 352
           I  +  K              D R+   S + +++ +P F SQTK KL S+++       
Sbjct: 279 IKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGSTDMGPDLPSV 329

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD---LTRRKGVLDIA- 408
           R+ V  F+   L  +L ++P  A ++++K+L A   R      R       +K  L    
Sbjct: 330 RTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDRAKKSNLHNKK 389

Query: 409 --SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
                  L D       +S LF+ EGDSA GS  + R    QA+  LRGK LN       
Sbjct: 390 LRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGMSKK 449

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR LL+TFF +  P
Sbjct: 450 IVYENEEFNLLQAALNI-----EESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFP 504

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            +I  G LYI++ PL+ +   K   Y   E+   D +       EI  F    G IS ++
Sbjct: 505 EMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKLKPKPEITRF-KGLGEISPDE 563

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTF 612
            +NFI + +++D ++ D   + +K  
Sbjct: 564 FKNFIGETIRLDPVMLDKSTSIEKLL 589



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 17/183 (9%)

Query: 626 SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
                 +   ++  N L       E       NN  I       G+  + +L    +  F
Sbjct: 444 YGMSKKIVYENEEFNLLQAALNIEESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQFF 503

Query: 686 GSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
               + I    +      +  +    + I         D I  + +    + R+KGLGE+
Sbjct: 504 ---PEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL-KPKPEITRFKGLGEI 559

Query: 746 NASQLW----ETT-LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800
           +  +      ET  L+P       V +  ++  + L    MG     R+ FI  N L   
Sbjct: 560 SPDEFKNFIGETIRLDP-------VMLDKSTSIEKLLEFYMGKNTPDRQTFIINN-LKVE 611

Query: 801 LDI 803
           LD+
Sbjct: 612 LDV 614


>gi|88824777|gb|ABD52434.1| gyrase B [Enterobacter cloacae]
          Length = 394

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 241/397 (60%), Positives = 307/397 (77%), Gaps = 4/397 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ D PL VTG   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DK 59

Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+G
Sbjct: 60  TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 118 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KL
Sbjct: 178 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+
Sbjct: 238 VSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDL 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 298 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           MLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 358 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 394


>gi|68159575|gb|AAY86369.1| gyrase B [Clostridium clostridioforme]
          Length = 426

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/429 (42%), Positives = 257/429 (59%), Gaps = 11/429 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YK SGGLHGVG SVVNALS+ + L++ R+G IY   +  G   
Sbjct: 1   EVIMTVLHAGGKFDNDAYKTSGGLHGVGSSVVNALSAHMDLKVYRDGFIYHDEYEKGRPV 60

Query: 157 NPLV-----VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
             L      V G    +TGT + FLP  DIF    F  D L+ RL E ++LN ++ +   
Sbjct: 61  IKLENGLLPVIGKT-RETGTCINFLPDGDIFEKTRFKADWLKSRLHETAYLNPNLTLYYE 119

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           +KR  E  ++      GI A+V  L+  K P+   PI  +G+ D + ++ A+++ D + E
Sbjct: 120 NKRPGEGEKVAFHEPEGIVAYVRELNSGKTPVH-DPIYFKGTVDKVEVEAAIQFVDTFEE 178

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+L F NNI  ++GGTHL+G ++  T  I SY  +    K    +  G D R G T+V++
Sbjct: 179 NILGFCNNIFTQEGGTHLAGFKTKFTALINSYAREIGILKDKDTNFTGADTRNGMTAVIA 238

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K PDP F  QTK KL S++    V +   D L  + + +    K ++     ++ +R A
Sbjct: 239 VKHPDPIFEGQTKTKLASADATKAVFTVTGDELQLYFDRNVEVLKGVIGCAEKSAKIRRA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
             +A+     K      S  GKLA+C  RD  + E+F+VEGDSAGGSAK  R+R+ QAIL
Sbjct: 299 EEKAKTNMLTKSKFSFDS-NGKLANCESRDASRCEIFIVEGDSAGGSAKTARNRQYQAIL 357

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ---DSFDINKLRYHKIIIMTDADV 508
           P+RGKILNVE+A  DK+L++ EI T+I + G G  +   + FDI KLRY KII+MTDADV
Sbjct: 358 PIRGKILNVEKASMDKVLANAEIKTMINSFGCGFSEGYGNDFDITKLRYDKIILMTDADV 417

Query: 509 DGAHIRTLL 517
           DG+HIRTLL
Sbjct: 418 DGSHIRTLL 426


>gi|203287508|ref|YP_002222523.1| DNA topoisomerase IV [Borrelia recurrentis A1]
 gi|201084728|gb|ACH94302.1| DNA topoisomerase IV [Borrelia recurrentis A1]
          Length = 598

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 193/642 (30%), Positives = 281/642 (43%), Gaps = 55/642 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++ + YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKKNCYDESKIVTLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIVDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I +    D   TV D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GKEIVIK-REDNVITVRDYGRGIPLGK-------VVESV-SVINTGAKYNDNVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  REGN +E  F  G L N     G +    GT + FL  ++
Sbjct: 112 NGVGTKAVNALSSKFLIRSIREGNFFEAVFSKGNLIN--TTEGKSDEQNGTYIEFLADTE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D LQ R      LN  ++I+  D+              G+  F+    +++
Sbjct: 170 IFGKYKYSEDFLQRRFFHYVCLNKGLEINYNDQ--------IFRSDNGLLNFIRAEIKYE 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDFVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTSDGGTHQTGFREGFARAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LSIK+ DP F SQTK KL + E R  +   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSIKIKDPIFESQTKNKLGNIETRGNIAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC--- 417
              +   L +    AK I  KV+D   +R      R    ++    I+    KL DC   
Sbjct: 328 QRLILEILYKDKTLAKTIESKVIDNERLRKELSSVRKE-AKERAKKISFKIPKLKDCKFH 386

Query: 418 ---SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                     + +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNEKSVHSDATMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNRSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      L+ NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTYFEDLVLNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
           +I++ PL+ +    +  Y   EE  +  L+   L           G IS N+ + FID A
Sbjct: 502 HILETPLFRVRNKSATIYCYSEEDKQKALLK--LKNPEVTRFKGLGEISPNEFKGFIDVA 559

Query: 595 LKIDKLIKDFYPNHDKTFIEQA-VISGVFNCESDQEINVSLA 635
              +  +      + K   EQ     G    E    I  +L 
Sbjct: 560 ---NIKLTKVDLVNIKEIKEQLGFYMGPNTPERRNFIMENLI 598


>gi|120435833|ref|YP_861519.1| DNA topoisomerase IV subunit B [Gramella forsetii KT0803]
 gi|117577983|emb|CAL66452.1| topoisomerase IV subunit B [Gramella forsetii KT0803]
          Length = 620

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/664 (26%), Positives = 295/664 (44%), Gaps = 64/664 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS+N +   Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EV+DN+IDE 
Sbjct: 1   MSENTK---YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSQDDGIYILLKEVIDNSIDEF 57

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I +++  +    V D GRGIP            +V+ ++++ GGK++ +++K 
Sbjct: 58  VMGAGKTIEISV-QNQRVIVRDFGRGIPLGK-------VVDVV-SKMNTGGKYDTRAFKK 108

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALSS+ ++   R+   +   F  G L              GT++TF+
Sbjct: 109 SVGLNGVGTKAVNALSSYFRVESSRDTKSHAAEFEQGNLMEE-EHLDETSRRRGTKITFI 167

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   IF    F  + ++  L+   +LN  + I    ++         + + G++  +   
Sbjct: 168 PDEVIFKKYKFRNEYIEKMLKNYVYLNPGLTIVFNGEK--------FYSENGLKDLLGDS 219

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                 L    + ++G    ++I         Y E    F N      GGTHL+  R ++
Sbjct: 220 IHEDDMLYP-ILHLKGEDIEVAIT---HSRSQYSEEYHSFVNGQNTSQGGTHLAAFRESV 275

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + I  Y  K++ +          D R+   + +SIK+ +P F SQTK KL S+++    
Sbjct: 276 VKTIREYYGKNYEAS---------DIRKSIVAAISIKVMEPVFESQTKTKLGSTDMGGKL 326

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLD 406
              R+ +  FV   L  +L ++   A+ + +K+L A   R      R       +K  L 
Sbjct: 327 PTVRTHINDFVKRNLDNYLHKNSETAESLQRKILQAERERKDLSGIRKLAKDRAKKASLH 386

Query: 407 IASLPGKLADCSERDPKKS---ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              L        +   ++     LF+ EGDSA GS  + R    QA+  L+GK LN    
Sbjct: 387 NKKLRDCRVHLGDSKHERCLETTLFITEGDSASGSITKSRDVVTQAVFSLKGKPLNSYGL 446

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL          +  LRYH I+I TDADVDG HIR LL+TFF +
Sbjct: 447 SKKIVYENEEFNLLQAALNI-----EESLEDLRYHNIVIATDADVDGMHIRLLLITFFLQ 501

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI    LYI++ PL+ +   K   Y   E      +   S   EI  F    G IS
Sbjct: 502 FFPELIKENHLYILQTPLFRVRNKKETIYCYSEMERRQAMEKLSGKPEITRF-KGLGEIS 560

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            ++  +FI D +++D ++ D   + ++           +  ++  +    +   L   L+
Sbjct: 561 PDEFVHFIGDNIRLDPVMLDKDKSIEEML-------SFYMGKNTPDRQEFIIDNLKFELD 613

Query: 644 FIAE 647
            + +
Sbjct: 614 LVED 617



 Score = 37.7 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 31/175 (17%)

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L   LN      +  +H  +  +D  V  +        +L  +    F  +  +   N +
Sbjct: 460 LQAALNIEESLEDLRYHNIVIATDADVDGM-----HIRLLLITFFLQFFPELIKE--NHL 512

Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ-------- 749
                 +  +    + I           +  +  K   + R+KGLGE++  +        
Sbjct: 513 YILQTPLFRVRNKKETIYCYSEMERRQAMEKLSGK-PEITRFKGLGEISPDEFVHFIGDN 571

Query: 750 --LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
             L     +P       V +      +++ S  MG     R+EFI +N L   LD
Sbjct: 572 IRL-----DP-------VMLDKDKSIEEMLSFYMGKNTPDRQEFIIDN-LKFELD 613


>gi|148971393|gb|ABR20234.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 199/423 (47%), Positives = 277/423 (65%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGL+GVGV VVNALS  L+L I +EG ++   +  G+ D
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLYGVGVPVVNALSRRLELEIYQEGRLHRQVYHQGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G+     GT + F P   I     F +DTL HR REL+FLN  + I  + +   
Sbjct: 61  APLSVVGTTA-LRGTSIRFWPDLSIMETDTFLFDTLAHRFRELAFLNPILTI--VLREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE-NVLC 275
             RE T  ++GGI+++  +L+ +KK + +     +        ++A ++ +      +L 
Sbjct: 118 SLREETFHFEGGIKSYNEFLNENKKTIHEVLFFRRELPSGAQFEVAFQYQETTDNETILG 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  K+GGTH+ G R+ALTR I  +++    +K ++    G+D REG T+V+S+++P
Sbjct: 178 FANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELR--GEDIREGLTAVVSVRIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK KL SS V   +E+F+ + +    EE P  AK I  K +  +M R+AAR+A
Sbjct: 236 DPQFEGQTKAKLGSSWVSGAMETFLAEEMQERFEEFPQIAKKIADKAIQTAMAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           ++L +RK VL+ ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R+ QAILPL+G
Sbjct: 296 KELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAILPLKG 355

Query: 456 KILNVERA-RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+A   ++ ++  E+  LITA+G G+G + +    LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|148616452|gb|ABQ96969.1| GyrB [Nocardiopsis gilva]
          Length = 424

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 202/425 (47%), Positives = 277/425 (65%), Gaps = 6/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF    Y VSGGLHGVG+SVVNALS+ L   I  EG+ +   + +G   
Sbjct: 2   EVIMTVLHAGGKFEGGGYAVSGGLHGVGLSVVNALSTRLSAEIWTEGHRWTQDYRDGAPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L        +TGT++TF     IF    +N++TL  R++E +FLN  + I++ D+R  
Sbjct: 62  ADLSK-DEPTEETGTQITFWADGSIFETTTYNFETLARRMQETAFLNKGLSITIRDERPE 120

Query: 217 E----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y+ G+  FV +++  K P   S I  +   D IS+++AM+WN  Y  +
Sbjct: 121 FTGDAPVVHTYHYENGLADFVRHINAAKDPAHASIISFEEEGDGISVEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       ++ + ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRTALTSIVNRYARDQRLVREKEDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK +V K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQRVTNEHLRDWFERNPGEAKDVVTKATQAARARIAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P+KSE+++VEGDSAGGSAK GR    QAILP
Sbjct: 301 RQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPHYQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITA+GTG+ ++ FDI KLRYHKII+MTDADVDG+H
Sbjct: 361 IRGKILNVEKSRIDRILKNNEVQAIITAMGTGVHEE-FDIEKLRYHKIILMTDADVDGSH 419

Query: 513 IRTLL 517
           IRTLL
Sbjct: 420 IRTLL 424


>gi|257168214|gb|ACV40240.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168218|gb|ACV40242.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168224|gb|ACV40245.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168226|gb|ACV40246.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168228|gb|ACV40247.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168230|gb|ACV40248.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168298|gb|ACV40284.1| DNA gyrase subunit B [Yersinia enterocolitica]
          Length = 279

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/281 (54%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +       Y+GGI+AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|111380382|gb|ABH09624.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 391

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 231/393 (58%), Positives = 305/393 (77%), Gaps = 3/393 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G   ++
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DE 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     Y+GG
Sbjct: 60  TGTRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFMYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           I+AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGT
Sbjct: 119 IQAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGT 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 HLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+
Sbjct: 239 VSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDL 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 AGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 358

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           MLSSQE+ TLITA+G GIG+D ++ +KLRYH I
Sbjct: 359 MLSSQEVATLITAMGCGIGRDEYNPDKLRYHNI 391


>gi|257168262|gb|ACV40264.1| DNA gyrase subunit B [Yersinia kristensenii]
 gi|257168300|gb|ACV40286.1| DNA gyrase subunit B [Yersinia kristensenii]
 gi|257168312|gb|ACV40292.1| DNA gyrase subunit B [Yersinia kristensenii]
 gi|257168314|gb|ACV40293.1| DNA gyrase subunit B [Yersinia kristensenii]
 gi|257168316|gb|ACV40294.1| DNA gyrase subunit B [Yersinia kristensenii]
 gi|257168322|gb|ACV40297.1| DNA gyrase subunit B [Yersinia kristensenii]
          Length = 279

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/281 (55%), Positives = 200/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI AFV YL ++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168292|gb|ACV40280.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/281 (54%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H+EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHEEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL + G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKMVGET-DLTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI AFV YL ++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIRAFVEYLSKNKTPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|295388323|gb|ADG03057.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ F   +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFPNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|257168210|gb|ACV40238.1| DNA gyrase subunit B [Yersinia bercovieri]
 gi|257168268|gb|ACV40267.1| DNA gyrase subunit B [Yersinia mollaretii]
 gi|257168272|gb|ACV40269.1| DNA gyrase subunit B [Yersinia mollaretii]
 gi|257168274|gb|ACV40271.1| DNA gyrase subunit B [Yersinia mollaretii]
 gi|257168276|gb|ACV40272.1| DNA gyrase subunit B [Yersinia mollaretii]
          Length = 279

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/281 (55%), Positives = 203/281 (72%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT LH+EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGLHEEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS + F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DLTGTTVRFWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI+AFV YL ++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIKAFVEYLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|85541233|gb|ABC70857.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Bovismorbificans]
          Length = 392

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 235/395 (59%), Positives = 302/395 (76%), Gaps = 4/395 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GG
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A
Sbjct: 238 SSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+N AILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 392


>gi|198042690|gb|ACH81170.1| GyrB [Pseudoalteromonas sp. UST050418-011]
          Length = 392

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 238/394 (60%), Positives = 305/394 (77%), Gaps = 6/394 (1%)

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG +YE  +  G+ D P
Sbjct: 1   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVPDAP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G +   TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E 
Sbjct: 61  LAAIGDSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EEN 118

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCF 276
           +     Y+GGI AFV YL+R+K P+ +        R+   IS++++M+WND + EN+ CF
Sbjct: 119 KSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDAFQENIYCF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKM 334
           TNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+
Sbjct: 179 TNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DA+  R+AAR+
Sbjct: 239 PDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDAARAREAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 299 AREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLK 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D
Sbjct: 359 GKILNVEKARFDKMLSSQEVATLITALGCGIGRD 392


>gi|257168236|gb|ACV40251.1| DNA gyrase subunit B [Yersinia frederiksenii]
 gi|257168242|gb|ACV40254.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 279

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/281 (54%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +       Y+GGI+AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|27530058|dbj|BAC53884.1| DNA gyrase B subunit [Legionella jamestowniensis]
          Length = 285

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/287 (58%), Positives = 211/287 (73%), Gaps = 3/287 (1%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHHM++EV+DN+IDE+L GY   I VT++ D S TV D+GRGIP D+HKEEG SAAEVIM
Sbjct: 1   LHHMVFEVVDNSIDEALAGYCTEIQVTIHGDESITVKDDGRGIPVDIHKEEGRSAAEVIM 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G +YE  + NG+ D PL 
Sbjct: 61  TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLIRRNGKVYEQHYRNGVPDAPLA 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG A   TGT+V F PS++ F+  +F+YD L  RLRELSFLNS V I L D+R+ +   
Sbjct: 121 VTGDAT-STGTQVWFKPSANTFTNIEFHYDILAKRLRELSFLNSGVCIHLYDERTQKR-- 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y+GGI+AFV +L+R+K P+M     + G ++NIS++LAM+WND + E + CFTNNI
Sbjct: 178 DTFRYEGGIQAFVEHLNRNKTPIMPLVFTLTGEKENISVELAMQWNDSFQETIFCFTNNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           PQ+DGGTHL+G R+ALTR + +Y+E    +KK K    GDD REG T
Sbjct: 238 PQRDGGTHLAGFRAALTRTLNTYIENEGFAKKAKIVTTGDDAREGLT 284


>gi|269799086|gb|ACZ43821.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 368

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 208/370 (56%), Positives = 273/370 (73%), Gaps = 4/370 (1%)

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           +   I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGG
Sbjct: 1   HCTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 60

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS 
Sbjct: 61  LHGVGVSVVNALSKKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSH 119

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F+   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +
Sbjct: 120 ETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVN 178

Query: 240 KKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           K P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR
Sbjct: 179 KTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTR 238

Query: 299 QITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
            + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 239 TLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVE 298

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             + + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLADC
Sbjct: 299 QAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADC 358

Query: 418 SERDPKKSEL 427
            E+DP  SEL
Sbjct: 359 QEKDPALSEL 368


>gi|257168208|gb|ACV40237.1| DNA gyrase subunit B [Yersinia aleksiciae]
 gi|257168260|gb|ACV40263.1| DNA gyrase subunit B [Yersinia aleksiciae]
 gi|257168266|gb|ACV40266.1| DNA gyrase subunit B [Yersinia aleksiciae]
 gi|257168288|gb|ACV40278.1| DNA gyrase subunit B [Yersinia aleksiciae]
          Length = 279

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/281 (55%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT LH+EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGLHEEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DLTGTTVRFWPSFQTFTNNTEFQYEMLAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI AFV YL ++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|295388340|gb|ADG03065.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TL TALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLTTALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|228473015|ref|ZP_04057772.1| DNA topoisomerase II domain protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275597|gb|EEK14374.1| DNA topoisomerase II domain protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 617

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/630 (29%), Positives = 281/630 (44%), Gaps = 55/630 (8%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           N   + Y  D+IQ L+  + V+ RP MYIG     S    G++ ++ EV+DN+IDE + G
Sbjct: 7   NKPITEYGDDNIQTLEWQEHVRMRPGMYIGKLGDGSSADDGIYILLKEVIDNSIDEFVMG 66

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I V +  D   +V D GRGIP            +V+ ++++ GGK++ +++K S G
Sbjct: 67  AGKQIEVRI-EDNKVSVRDFGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKKSVG 117

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVG   VNALSS+  +   R+G     SF  G+L        ++    GT V F+P  
Sbjct: 118 LNGVGTKAVNALSSYFYVASVRDGQKKSASFSLGVLQEE-SPLKASNERRGTLVEFVPDG 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    F  + +   L+  ++LN  + I    ++         F + G++  +   +  
Sbjct: 177 TIFKNYKFRSEYVVRMLKNYTYLNPGLVIVYNGEK--------FFSENGLKDLLLEDNNE 228

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +       I ++G    I++         Y E    F N      GGTHL+  R A+   
Sbjct: 229 EDFAYP-IIHLRGEDIEIALT---HSQSQYSEQYYSFVNGQNTTQGGTHLAAYREAIVAT 284

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------- 352
           + +Y  K              D R+     +SIK+ +P F SQTK KL S+E+       
Sbjct: 285 LRNYYNK---------PYDASDIRKSIIGAISIKVMEPVFESQTKTKLGSTEMGDGLPTV 335

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA- 408
           R+ + +FV   L  +L + P  A+ I KK+L A   R      R       +K  L    
Sbjct: 336 RTYITNFVQKHLDDYLHKQPEIAEEIQKKILQAERERKELSGIRKLARDRAKKVSLHNKK 395

Query: 409 --SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
                  L D       +S LF+ EG+SA GS    R    QA+  LRGK LN       
Sbjct: 396 LRDCRIHLTDSKHEKALESTLFITEGNSASGSITTSRDANTQAVFSLRGKPLNSFGKTKK 455

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L  AL          I  LRY+ I++ TDADVDG HIR LL+TFF +  P
Sbjct: 456 IVYENEEFNLLQAAL-----DIEDSIENLRYNNIVLATDADVDGMHIRLLLITFFLQFFP 510

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G +YI++ PL+ +   K   Y   EE  E     + L           G IS ++
Sbjct: 511 ELIKEGHVYILQTPLFRVRNSKETIYCYSEE--ERIAAIEKLKNPEITRFKGLGEISPDE 568

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
            ++FI   +++D ++ D   N +K      
Sbjct: 569 FKHFIGQDMRLDPVMMDKAMNIEKLLDFYM 598


>gi|68165236|gb|AAY87578.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165238|gb|AAY87579.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 201/359 (55%), Positives = 268/359 (74%), Gaps = 3/359 (0%)

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 60

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +F
Sbjct: 61  VNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIEF 119

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ +  
Sbjct: 120 HYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKV 178

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K
Sbjct: 179 FHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDK 238

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ 
Sbjct: 239 EGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD 298

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 299 FLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 357


>gi|91201871|emb|CAJ74931.1| similar to DNA gyrase subunit B [Candidatus Kuenenia
           stuttgartiensis]
          Length = 613

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/617 (27%), Positives = 275/617 (44%), Gaps = 61/617 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +  S+Y  + I+ L   + ++ RP MYIG     S    G++ ++ EV+DN+IDE + G+
Sbjct: 1   MVKSAYTEEHIKSLDWKEHIRLRPGMYIGKLGDGSSMDDGIYVLVKEVVDNSIDEYVMGF 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM---TRLHAGGKFNQKSYKVS 117
              I + +  +   TV D GRGIP              +     +++ GGK++ ++++ S
Sbjct: 61  GKTIEIKI-SEHEVTVRDYGRGIPLGK-----------VFDCVAKINTGGKYDSEAFQKS 108

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+G+G   VNALS +  ++  R+GN   + F  G +           +  GT + F+P
Sbjct: 109 VGLNGIGTKAVNALSGYFMVQSIRDGNAKSVEFSRGNMTKDFP-VEKTSHRNGTLIQFIP 167

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IF    F  D L++++   ++LN+ + I    ++           + G+   ++   
Sbjct: 168 DEKIFKNYRFIPDFLENQIWNYAYLNAGLTIDFNGRKI--------HSENGLFDLLTRKT 219

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             +                  I+ A    D Y E    F N      GGTHL+  R A+ 
Sbjct: 220 DPETLRYPIIHSRDRD-----IEFAFTHADQYGEEYYSFVNGQHTTQGGTHLAAFREAIV 274

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS--- 354
           R +  + +K F +          D R      +S+++ +P F SQTK KL S  +     
Sbjct: 275 RTVREFYKKDFDAA---------DIRASIVGAISVRIQEPVFESQTKTKLGSINISPDGI 325

Query: 355 ----VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDI 407
                V  +V   L  +L +H   A+ ++K++L +   R      +   +   +K  L  
Sbjct: 326 SIRAFVNDYVKKELDDYLHKHNDVAEKLLKRILQSERERKEIAGIKKLANQRAKKANLHN 385

Query: 408 ASLPGKLADCSERDPKK---SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             L       +    ++   S +F+ EGDSA GS  + R+ E QAI  LRGK LN     
Sbjct: 386 KKLRDCRIHYNSEKNEQRYESSIFITEGDSASGSITKARNVETQAIFSLRGKPLNCFGLT 445

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     I  LRY+ +II TDADVDG HIR LL+TFF + 
Sbjct: 446 KKVVYENEEFNLLQHALNIEDG-----IENLRYNNVIIATDADVDGMHIRLLLMTFFLQF 500

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
              L+ NG +YI++ PL+ +       Y  +EE     +     + EI  F    G IS 
Sbjct: 501 FSDLVKNGHVYILETPLFRVRNKNETMYCYNEEEKLAAMNKMGKNPEITRF-KGLGEISP 559

Query: 585 NDLRNFIDDALKIDKLI 601
           N+   FI + +++  L+
Sbjct: 560 NEFGQFIGENIRLQPLV 576


>gi|148971309|gb|ABR20192.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 207/422 (49%), Positives = 293/422 (69%), Gaps = 5/422 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+   YKVSGGLHGVG+SVVNALS  L    +  G ++   +  G   
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGLSVVNALSKSLTAYDRYGGQLFVQQYERGKPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G   + TG E+ FLP   IF    F +DTL +RLRE +FLN+ V +SL+D+ + 
Sbjct: 61  GPMTAVGPD-DTTGFELVFLPDDTIFEEMGFQFDTLANRLREQAFLNAGVYLSLVDQATG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-VLC 275
             R++   Y GG+ +FV YL+ +++ L   PI     R+ +S+D+A+++ND Y +  +  
Sbjct: 120 --RQVRYQYNGGVVSFVEYLNLNREVLHAHPIAFNAQRERVSVDVAIQYNDTYTDTGLFT 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F N I   +GGTH +G ++ALT+    +  K    K+   ++ G+D REG T++ S+K+P
Sbjct: 178 FANTIHTAEGGTHEAGFKAALTKVCNDFARKYGLLKEQDSNLSGEDVREGITAICSVKLP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +SE+R + E+ V++GLS + EE P  AK +++K + AS  R+AAR+A
Sbjct: 238 EPQFEGQTKTKLGNSEIRGITEAVVSEGLSTFFEETPTVAKRVLEKAISASRAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+L RRK  L+ ++LPGKL DCS +DP +SE++LVEGDSAGGSAKQGR+R  QAILPLRG
Sbjct: 298 RELVRRKNALESSTLPGKLTDCSSKDPSESEIYLVEGDSAGGSAKQGRNRAFQAILPLRG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVERAR D++L+++EI  +ITA+GTGI    F+++  RYH+I++MTDADVDG+HIRT
Sbjct: 358 KILNVERARLDRILANEEIRAMITAIGTGI-AGDFNLDSARYHRIVLMTDADVDGSHIRT 416

Query: 516 LL 517
           LL
Sbjct: 417 LL 418


>gi|295388348|gb|ADG03069.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 235/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+  F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQTRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|295388290|gb|ADG03041.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  G+D REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGNDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|257168278|gb|ACV40273.1| DNA gyrase subunit B [Yersinia rohdei]
          Length = 279

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/281 (54%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +       Y+GGI+AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168234|gb|ACV40250.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 279

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/281 (54%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS   F +  +F Y+ L  RLR+LSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRDLSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +       Y+GGI+AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|253564645|ref|ZP_04842102.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_2_5]
 gi|251948421|gb|EES88703.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_2_5]
 gi|301165330|emb|CBW24902.1| putative topoisomerase IV subunit B [Bacteroides fragilis 638R]
          Length = 623

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/619 (27%), Positives = 277/619 (44%), Gaps = 59/619 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           +     Y  D+I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN+IDE    
Sbjct: 10  DNNPVEYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHPEDGIYVLLKEVIDNSIDEFKMQ 69

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I + +  +   +V D GRGIP            E + + L+ GGK++ K++K S G
Sbjct: 70  SGKKIEIRVEENLRVSVRDYGRGIPQGK-------LIEAV-SVLNTGGKYDSKAFKKSVG 121

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVGV  VNALSS  ++R  R+G +   +F  G L            + GT + F P  
Sbjct: 122 LNGVGVKAVNALSSNFEVRSYRDGKVRCATFTKGELVTDHTE--DTEEENGTYIFFEPDE 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F    F  + ++  LR  ++LN+ + I    +R           + G+   ++     
Sbjct: 180 TLFLNYSFRPEFIETMLRNYTYLNTGLAIIYNGQRI--------LSRNGLVDLLNDNMTA 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +   + ++G      I++A      Y E    F N      GGTH S  +  + R 
Sbjct: 232 --TGLYPIVHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIART 285

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS----- 354
           I  +  K+             D R G  + +++ + +P F SQTK KL S+ +       
Sbjct: 286 IKEFYNKNQDYT---------DIRNGLVAAIAVNVEEPMFESQTKIKLGSTNMSPGGITV 336

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGV 404
              V  F+   +  +L +H   A+I+++K+ D+   R         A  RA+        
Sbjct: 337 NKFVGDFIKQEVDNFLHKHADIAEIMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRK 396

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L    +          + +   +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 LRDCRVHLNDVKGKGLEEESC-IFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 455

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 456 KKVVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLLITFFLQF 510

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   EE   + +   S + EI  F    G IS 
Sbjct: 511 FPDLIKKGHVYILQTPLFRVRNKKKTLYCYTEEERVNAIKELSPNPEITRF-KGLGEISP 569

Query: 585 NDLRNFIDDALKIDKLIKD 603
           ++ R+FI   ++++++   
Sbjct: 570 DEFRHFIGKDMRLEQVSLR 588


>gi|68165226|gb|AAY87573.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165228|gb|AAY87574.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165230|gb|AAY87575.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165232|gb|AAY87576.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165246|gb|AAY87583.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165248|gb|AAY87584.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165254|gb|AAY87587.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165256|gb|AAY87588.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 201/359 (55%), Positives = 268/359 (74%), Gaps = 3/359 (0%)

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 60

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +F
Sbjct: 61  VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTFTNIEF 119

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ +  
Sbjct: 120 HYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKV 178

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K
Sbjct: 179 FHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDK 238

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ 
Sbjct: 239 EGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD 298

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 299 FLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 357


>gi|315022878|gb|EFT35902.1| DNA topoisomerase IV subunit B [Riemerella anatipestifer RA-YM]
          Length = 619

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/618 (27%), Positives = 292/618 (47%), Gaps = 55/618 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS+ +Q  +Y  D+I+ L   + ++ RP MYIG     S    G++ ++ E+LDN+IDE 
Sbjct: 1   MSEALQQVNYSEDNIRTLDWQEHIRLRPGMYIGKLGDGSSADDGIYILLKEILDNSIDEF 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
                  I + L+ D    + D GRGIP            + + ++++ GGK++ K++K 
Sbjct: 61  RMKAGKRIEIKLD-DRKVQIRDYGRGIPLGK-------VVDAV-SKMNTGGKYDSKAFKK 111

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS + +++  R+       F  G +         + +  GTE+TF+
Sbjct: 112 SVGLNGVGTKAVNALSEYFRVKSVRDNKTKVAEFCRGNITENFPE-EDSSDRNGTEITFI 170

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P ++IF    F  + ++  LR  ++LN  ++I    +          F + G++  +   
Sbjct: 171 PDAEIFLNYKFRKEYIERMLRNYAYLNPGLKIIFNGET--------YFSENGLKDLLEEE 222

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
              +       + ++G    ++I      +    E    F N      GGTHL+  R A 
Sbjct: 223 MESQTLY--PIVHLKGDDIEVAIT---HSDKSQTETYFSFVNGQNTTQGGTHLNAFREAY 277

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + I  +  K+F +          D R+   + +SI + +P F SQTK KL S+++    
Sbjct: 278 VKTIREFFNKNFDAS---------DIRKSIIAAISINVEEPVFESQTKTKLGSNDIGPQG 328

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA---ARRARDLTRRKGVLD 406
              R+ V  F+   L  +L ++P  A+ I KK+L +   R      ++      +K  L 
Sbjct: 329 PTVRTFVIDFLKTKLDNFLHKNPEVAEAIYKKILVSERERKELSGIQKLARERAKKVSLH 388

Query: 407 IASLPGKLADCSERDPKK---SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              L       +E+   +   +++F+ EGDSA GS  + R  E QA+  L+GK LN    
Sbjct: 389 NKKLRDCRQHYNEQKADRKSETQIFITEGDSASGSITKSRDVETQAVFSLKGKPLNCYGL 448

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL          +  LRY+++II TDADVDG HIR L++TFF +
Sbjct: 449 TKKVVYENEEFNLLQAALNI-----EESLEDLRYNQVIIATDADVDGMHIRLLMITFFLQ 503

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI NG LYI++ PL+ +   K  +Y   EE     L     + EI  F    G IS
Sbjct: 504 FFPDLIKNGHLYILQTPLFRVRNKKETRYCYTEEERIKALNELGKNPEITRF-KGLGEIS 562

Query: 584 KNDLRNFIDDALKIDKLI 601
            ++ ++FI   ++++ ++
Sbjct: 563 PDEFKHFIGKDIRLEPVV 580


>gi|295388325|gb|ADG03058.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ +S+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGVSVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREVTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|53715824|ref|YP_101816.1| DNA topoisomerase IV subunit B [Bacteroides fragilis YCH46]
 gi|60683745|ref|YP_213889.1| DNA topoisomerase IV subunit B [Bacteroides fragilis NCTC 9343]
 gi|265764692|ref|ZP_06092967.1| DNA topoisomerase IV, B subunit [Bacteroides sp. 2_1_16]
 gi|52218689|dbj|BAD51282.1| DNA topoisomerase IV subunit B [Bacteroides fragilis YCH46]
 gi|60495179|emb|CAH10000.1| putative topoisomerase IV subunit B [Bacteroides fragilis NCTC
           9343]
 gi|263254076|gb|EEZ25510.1| DNA topoisomerase IV, B subunit [Bacteroides sp. 2_1_16]
          Length = 623

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/619 (27%), Positives = 277/619 (44%), Gaps = 59/619 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           +     Y  D+I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN+IDE    
Sbjct: 10  DNNPVEYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHPEDGIYVLLKEVIDNSIDEFKMQ 69

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I + +  +   +V D GRGIP            E + + L+ GGK++ K++K S G
Sbjct: 70  SGKKIEIRVEENLRVSVRDYGRGIPQGK-------LIEAV-SVLNTGGKYDSKAFKKSVG 121

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVGV  VNALSS  ++R  R+G +   +F  G L            + GT + F P  
Sbjct: 122 LNGVGVKAVNALSSNFEVRSYRDGKVRCATFTKGELVTDHTE--DTEEENGTYIFFEPDE 179

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F    F  + ++  LR  ++LN+ + I    +R           + G+   ++     
Sbjct: 180 TLFLNYSFRPEFIETMLRNYTYLNTGLAIIYNGQRI--------LSRNGLVDLLNDNMTA 231

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +   + ++G      I++A      Y E    F N      GGTH S  +  + R 
Sbjct: 232 --TGLYPIVHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIART 285

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS----- 354
           I  +  K+             D R G  + +++ + +P F SQTK KL S+ +       
Sbjct: 286 IKEFYNKNQDYT---------DIRNGLVAAIAVNVEEPMFESQTKIKLGSTNMSPGGITV 336

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGV 404
              V  F+   +  +L +H   A+I+++K+ D+   R         A  RA+        
Sbjct: 337 NKFVGDFIKQEVDNFLHKHADVAEIMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRK 396

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L    +          + +   +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 397 LRDCRVHLNDVKGKGLEEESC-IFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 455

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 456 KKVVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLLITFFLQF 510

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   EE   + +   S + EI  F    G IS 
Sbjct: 511 FPDLIKKGHVYILQTPLFRVRNKKKTLYCYTEEERVNAIKELSPNPEITRF-KGLGEISP 569

Query: 585 NDLRNFIDDALKIDKLIKD 603
           ++ R+FI   ++++++   
Sbjct: 570 DEFRHFIGKDMRLEQVSLR 588


>gi|325336833|gb|ADZ13107.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Riemerella anatipestifer RA-GD]
          Length = 633

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 173/618 (27%), Positives = 292/618 (47%), Gaps = 55/618 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS+ +Q  +Y  D+I+ L   + ++ RP MYIG     S    G++ ++ E+LDN+IDE 
Sbjct: 15  MSEALQQVNYSEDNIRTLDWQEHIRLRPGMYIGKLGDGSSADDGIYILLKEILDNSIDEF 74

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
                  I + L+ D    + D GRGIP            + + ++++ GGK++ K++K 
Sbjct: 75  RMKAGKRIEIKLD-DRKVQIRDYGRGIPLGK-------VVDAV-SKMNTGGKYDSKAFKK 125

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS + +++  R+       F  G +         + +  GTE+TF+
Sbjct: 126 SVGLNGVGTKAVNALSEYFRVKSVRDNKTKVAEFCRGNITENFPE-EDSSDRNGTEITFI 184

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P ++IF    F  + ++  LR  ++LN  ++I    +          F + G++  +   
Sbjct: 185 PDAEIFLNYKFRKEYIERMLRNYAYLNPGLKIIFNGET--------YFSENGLKDLLEEE 236

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
              +       + ++G    ++I      +    E    F N      GGTHL+  R A 
Sbjct: 237 MESQTLY--PIVHLKGDDIEVAIT---HSDKSQTETYFSFVNGQNTTQGGTHLNAFREAY 291

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + I  +  K+F +          D R+   + +SI + +P F SQTK KL S+++    
Sbjct: 292 VKTIREFFNKNFDAS---------DIRKSIIAAISINVEEPVFESQTKTKLGSNDIGPQG 342

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA---ARRARDLTRRKGVLD 406
              R+ V  F+   L  +L ++P  A+ I KK+L +   R      ++      +K  L 
Sbjct: 343 PTVRTFVIDFLKTKLDNFLHKNPEVAEAIYKKILVSERERKELSGIQKLARERAKKVSLH 402

Query: 407 IASLPGKLADCSERDPKK---SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              L       +E+   +   +++F+ EGDSA GS  + R  E QA+  L+GK LN    
Sbjct: 403 NKKLRDCRQHYNEQKADRKSETQIFITEGDSASGSITKSRDVETQAVFSLKGKPLNCYGL 462

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL          +  LRY+++II TDADVDG HIR L++TFF +
Sbjct: 463 TKKVVYENEEFNLLQAALNI-----EESLEDLRYNQVIIATDADVDGMHIRLLMITFFLQ 517

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI NG LYI++ PL+ +   K  +Y   EE     L     + EI  F    G IS
Sbjct: 518 FFPDLIKNGHLYILQTPLFRVRNKKETRYCYTEEERIKALNELGKNPEITRF-KGLGEIS 576

Query: 584 KNDLRNFIDDALKIDKLI 601
            ++ ++FI   ++++ ++
Sbjct: 577 PDEFKHFIGKDIRLEPVV 594


>gi|257168270|gb|ACV40268.1| DNA gyrase subunit B [Yersinia mollaretii]
          Length = 279

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/281 (55%), Positives = 202/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEGIS
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDEEGIS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS + F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DLTGTTVRFWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI+AFV YL ++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIKAFVEYLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168238|gb|ACV40252.1| DNA gyrase subunit B [Yersinia massiliensis]
          Length = 279

 Score =  369 bits (948), Expect = e-99,   Method: Composition-based stats.
 Identities = 157/281 (55%), Positives = 203/281 (72%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEGIS
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDEEGIS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS + F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DQTGTTVRFWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI+AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIKAFVEYLNKNKTPIHPKVFYFSTVKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|295388336|gb|ADG03063.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  369 bits (948), Expect = e-99,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSF NS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFSNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|295388292|gb|ADG03042.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388294|gb|ADG03043.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388296|gb|ADG03044.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388298|gb|ADG03045.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388300|gb|ADG03046.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388306|gb|ADG03049.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388317|gb|ADG03054.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388321|gb|ADG03056.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388329|gb|ADG03060.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388332|gb|ADG03061.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388334|gb|ADG03062.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388338|gb|ADG03064.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388342|gb|ADG03066.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388346|gb|ADG03068.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388352|gb|ADG03071.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388356|gb|ADG03073.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388358|gb|ADG03074.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388360|gb|ADG03075.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388362|gb|ADG03076.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388366|gb|ADG03078.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388368|gb|ADG03079.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388374|gb|ADG03082.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388376|gb|ADG03083.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388380|gb|ADG03085.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388382|gb|ADG03086.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388390|gb|ADG03090.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295442416|gb|ADG21187.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  369 bits (948), Expect = e-99,   Method: Composition-based stats.
 Identities = 235/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|227121275|gb|ACP19329.1| GyrB [Leptospirillum ferriphilum]
          Length = 405

 Score =  369 bits (948), Expect = e-99,   Method: Composition-based stats.
 Identities = 198/410 (48%), Positives = 273/410 (66%), Gaps = 7/410 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D PL 
Sbjct: 1   TVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLA 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G      GT + F P   I     F++DTL HR REL+FLN  + I L D+ +   RE
Sbjct: 61  VFGETT-QRGTIIRFWPDMTIMETDQFSFDTLAHRFRELAFLNPVLTIHLKDEET--LRE 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNN 279
            T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL F NN
Sbjct: 118 ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLGFANN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           +  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P P+F
Sbjct: 178 VHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIPGPQF 235

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A+DL 
Sbjct: 236 EGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLA 295

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILN
Sbjct: 296 KRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILN 355

Query: 460 VERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           VE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADV
Sbjct: 356 VEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADV 405


>gi|295388372|gb|ADG03081.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  369 bits (948), Expect = e-99,   Method: Composition-based stats.
 Identities = 235/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DYFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|167763905|ref|ZP_02436032.1| hypothetical protein BACSTE_02287 [Bacteroides stercoris ATCC
           43183]
 gi|167698021|gb|EDS14600.1| hypothetical protein BACSTE_02287 [Bacteroides stercoris ATCC
           43183]
          Length = 662

 Score =  369 bits (948), Expect = e-99,   Method: Composition-based stats.
 Identities = 175/653 (26%), Positives = 294/653 (45%), Gaps = 60/653 (9%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
               Y+ D+I+ L  ++ ++ R  MYIG     S    G++ ++ EV+DN+IDE   G  
Sbjct: 50  SEVEYNEDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG 109

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V +  +   +V D GRGIP            E + ++L+ GGK++ K++K S GL+
Sbjct: 110 KRIEVNIEENLRVSVRDYGRGIPQGK-------LVEAV-SKLNTGGKYDSKAFKKSVGLN 161

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+  VNALSS  ++R  R+G +    F  G+L + L     +  + GT + F P + +
Sbjct: 162 GVGIKAVNALSSRFEVRSYRDGKVRTAIFEKGVLQSDLTE--DSTEENGTYIFFEPDNTL 219

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+   F    ++  LR  ++LN+ +      +R             G+E  +        
Sbjct: 220 FTNYSFQNQFVETLLRNYTYLNTGLTFIYNGQRIISRH--------GLEDLLKDNMT--S 269

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
             +   + ++G      I++A    + Y E    F N      GGTH + L+  + R I 
Sbjct: 270 EGLYDIVHLKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTALKEHIARTIK 325

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SEVRS 354
            +  K+             D R G  + ++I + +P F SQTK KL S         V  
Sbjct: 326 EFYNKNQDYA---------DIRNGLVAAIAIDVEEPMFESQTKTKLGSNNMWPEGPTVNK 376

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGVLD 406
            V  F+   +  +L ++PL ++++++K+ D+   R         A  RA+        L 
Sbjct: 377 YVGDFIKTEVDNYLHKNPLVSEVMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRKLR 436

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
                       +++ +   +F+ EGDSA GS  + R    QA+  LRGK LN       
Sbjct: 437 DCRFHLSDGKGKDQEAESC-IFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKK 495

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR L++TFF +  P
Sbjct: 496 VVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLIITFFLQFFP 550

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G +YI++ PL+ +   K   Y   E+     +     + EI  F    G IS ++
Sbjct: 551 DLIKKGHVYILQTPLFRVRNKKKTSYCYTEDERVKAIEELGPNPEITRF-KGLGEISPDE 609

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
            R+FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 610 FRHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 661


>gi|68165242|gb|AAY87581.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  369 bits (948), Expect = e-99,   Method: Composition-based stats.
 Identities = 201/359 (55%), Positives = 268/359 (74%), Gaps = 3/359 (0%)

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 60

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +F
Sbjct: 61  VNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTFTNIEF 119

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ +  
Sbjct: 120 HYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKV 178

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K
Sbjct: 179 FHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDK 238

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ 
Sbjct: 239 EGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD 298

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 299 FLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 357


>gi|257168244|gb|ACV40255.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168246|gb|ACV40256.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168248|gb|ACV40257.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168250|gb|ACV40258.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168252|gb|ACV40259.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168254|gb|ACV40260.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168256|gb|ACV40261.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168258|gb|ACV40262.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168290|gb|ACV40279.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168296|gb|ACV40282.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168304|gb|ACV40288.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168306|gb|ACV40289.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168308|gb|ACV40290.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168310|gb|ACV40291.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168318|gb|ACV40295.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168320|gb|ACV40296.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168324|gb|ACV40298.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 154/281 (54%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H+EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHEEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL + G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKMVGET-DLTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI AFV YL ++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|147917477|gb|ABQ52591.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 392

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 234/394 (59%), Positives = 308/394 (78%), Gaps = 3/394 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           ++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+A
Sbjct: 60  QIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 FVDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A L
Sbjct: 239 EVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 299 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           SQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 SQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 392


>gi|300777682|ref|ZP_07087540.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
           gleum ATCC 35910]
 gi|300503192|gb|EFK34332.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
           gleum ATCC 35910]
          Length = 628

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 170/618 (27%), Positives = 289/618 (46%), Gaps = 56/618 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS  I N +Y  D+I+ L   + ++ RP MYIG     S    G++ ++ E+LDN+IDE 
Sbjct: 1   MSQEI-NPTYSEDNIRTLDWQEHIRLRPGMYIGKLGDGSSADDGIYILLKEILDNSIDEF 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
                  I + L+ DG  T+ D GRGIP            + + ++++ GGK++ K++K 
Sbjct: 60  RMRAGKRIEIKLD-DGKVTIRDFGRGIPLGK-------VVDAV-SKMNTGGKYDSKAFKK 110

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS + ++R  R+G +    F  G++           +  GTE++F+
Sbjct: 111 SVGLNGVGTKAVNALSDYFRVRSFRDGKMKAAEFSRGMIKENFEE-KETSDRNGTEISFI 169

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P  +IF    +  + ++  LR  ++LN  ++I    +          + + G++      
Sbjct: 170 PDGEIFLHFKYRKEYIERMLRNYAYLNPGLKILFNGET--------YYSENGLKD--LLE 219

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +  +  ++   + ++     ++I      +    E    F N      GGTHL+  R A 
Sbjct: 220 EELESDILYPIVHLKDDDIEVAIT---HSDKSQTETYFSFVNGQNTTQGGTHLNAFREAY 276

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + +  +  KSF +          D R+   + +SI + +P F SQTK KL S+++    
Sbjct: 277 VKTVREFFNKSFDAS---------DIRKSIIAAISINVEEPVFESQTKTKLGSNDMGPNG 327

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR------DAARRARDLTRRKG 403
              R+ +  F+   L  +L ++P  A+ I +K+L +   R          R R       
Sbjct: 328 PTVRTFIIDFLKSKLDNFLHKNPEIAEAIQRKILISERERKELSGIQKLARERAKKVSLH 387

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +        D        +++F+ EGDSA GS  + R  E QA+  L+GK LN    
Sbjct: 388 NKKLRDCRQHYNDQKAERKGDTQIFITEGDSASGSITKSRDVETQAVFSLKGKPLNCYGL 447

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL          +  LRY+++II TDADVDG HIR L++TFF +
Sbjct: 448 TKKVVYENEEFNLLQAALNI-----EESLEDLRYNQVIIATDADVDGMHIRLLMITFFLQ 502

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI NG LYI++ PL+ +   K  +Y   E+     L     + EI  F    G IS
Sbjct: 503 FFPDLIKNGHLYILQTPLFRVRNKKETRYCYTEQERVKALNELGKNPEITRF-KGLGEIS 561

Query: 584 KNDLRNFIDDALKIDKLI 601
            ++ ++FI   ++++ ++
Sbjct: 562 PDEFKHFIGKDIRLEPVV 579


>gi|282889676|ref|ZP_06298215.1| hypothetical protein pah_c004o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500250|gb|EFB42530.1| hypothetical protein pah_c004o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 612

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 183/657 (27%), Positives = 295/657 (44%), Gaps = 63/657 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M+       YD  S++ L  L+ ++ R  MYIG     S    G++ M+ EV+DN++DE 
Sbjct: 1   MAKK-----YDESSVKTLGALEHIRLRSGMYIGRLGDGSHPDDGIYIMVKEVIDNSVDEF 55

Query: 57  LEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKS 113
           +  + + I + ++ + G  +V D GRGIP             VI     ++ G K+N   
Sbjct: 56  IMKHGNRIIIGVDPEQGLISVRDFGRGIPLGK----------VIDCVSQINTGAKYNDDV 105

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           ++ S GL+GVG   VNALSS   +R  REG   E  F  G L      +       GT V
Sbjct: 106 FQFSVGLNGVGTKAVNALSSHFLVRSHREGKSMEAVFSQGKLI--REKSQKTSEPDGTYV 163

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F+P  +IF    F  + +Q RL   ++LN+ + +    +          + + G+   +
Sbjct: 164 EFIPDKEIFKKFRFEPEYIQKRLWHYAYLNTGLILEYNGQDI--------YSENGLLDLL 215

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +      +  +  P+  +G      ++ A      Y E+   F N     DGGTHLS  R
Sbjct: 216 NEEVT--EDRLYEPLYYRGK----LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFR 269

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             + + +  Y +K+           G D REG    +++++ DP F SQTK KL ++E+R
Sbjct: 270 EGILKGVNEYSKKN---------FQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELR 320

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             +   V D +   L ++   A  I+++++           A     ++    I+    K
Sbjct: 321 GPLVQEVKDAVVNMLYKNSSTANSIIERIVFNEK-LRKELAAVKKEAKEKQKKISFKIPK 379

Query: 414 LADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           L DC           +K+ +FL EGDSA  S    R    QA+  LRGK LNV   + D+
Sbjct: 380 LRDCKYHAQDKADVGEKTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQ 439

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E+  L++AL         DI  LRY K+I+ TDADVDG HIR LL+TFF      
Sbjct: 440 LYKNEEMFNLMSALNI-----EDDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEG 494

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           L+ NG L+I++ PL+ +   +   Y   EE  +  +       E+  F    G IS N+ 
Sbjct: 495 LVLNGHLFILETPLFKVRNREKTLYCYSEEERDKAIKQLKKGIEVTRF-KGLGEISPNEF 553

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
           + FI   +++  +    + +   T        G    +  Q I  +L ++L   L  
Sbjct: 554 KQFIGKDIRLIPVTISLFSDIKTTL---DFYMGKNTPKRKQFIMENLINELEPTLEA 607



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 36/202 (17%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +  + QAV S      +   + +    K     N ++  + +    ++    +++     
Sbjct: 415 RDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNIEDDIENLRYQKVILA-TDA 473

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
            V    +      F        + +  +      +  +      +         D     
Sbjct: 474 DVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVRNREKTLYCYSEEER-DKAIKQ 532

Query: 730 GRKGISMQRYKGLGEMNASQ---------LWETTLNPDTRSLLRVKITDASQADDLF--- 777
            +KGI + R+KGLGE++ ++                     L+ V I+       LF   
Sbjct: 533 LKKGIEVTRFKGLGEISPNEFKQFIGKDI-----------RLIPVTIS-------LFSDI 574

Query: 778 -SRL---MGDEVEPRREFIQEN 795
            + L   MG     R++FI EN
Sbjct: 575 KTTLDFYMGKNTPKRKQFIMEN 596


>gi|68165234|gb|AAY87577.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 202/359 (56%), Positives = 269/359 (74%), Gaps = 3/359 (0%)

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 60

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +F
Sbjct: 61  VNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIEF 119

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I LID+R  E ++    Y+GGI+AFV++L+R+K P+ +  
Sbjct: 120 HYDILAKRLRELSFLNSGVSIKLIDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKV 178

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K
Sbjct: 179 FHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDK 238

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ 
Sbjct: 239 EGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD 298

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 299 FLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 357


>gi|85541249|gb|ABC70865.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Newlands]
          Length = 397

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 235/396 (59%), Positives = 302/396 (76%), Gaps = 4/396 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
            F+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   +
Sbjct: 4   NFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-D 62

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+
Sbjct: 63  KTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYE 120

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 121 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 180

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 181 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 240

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD
Sbjct: 241 LVSSEVKSAVEQQMNELLSEYLLENPFDAKIVVGKIIDAARAREAARRAREMTRRKGALD 300

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +A LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 301 LAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPLKGKILNVEKARFD 360

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           KMLSSQE+ TLI ALG GIG+D ++ +KLRYH III
Sbjct: 361 KMLSSQEVATLIPALGCGIGRDEYNPDKLRYHSIII 396


>gi|164608610|gb|ABY62596.1| DNA gyrase beta subunit [Aliivibrio sp. ATCC 33715]
 gi|164608612|gb|ABY62597.1| DNA gyrase beta subunit [Vibrio sp. cann.1.1]
 gi|164608614|gb|ABY62598.1| DNA gyrase beta subunit [Vibrio sp. cann.1.2]
 gi|164608616|gb|ABY62599.1| DNA gyrase beta subunit [Vibrio sp. cann.1.3]
 gi|164608618|gb|ABY62600.1| DNA gyrase beta subunit [Vibrio sp. cann.1.4]
 gi|164608620|gb|ABY62601.1| DNA gyrase beta subunit [Vibrio sp. cann.2.1]
 gi|164608622|gb|ABY62602.1| DNA gyrase beta subunit [Vibrio sp. cann.2.2]
 gi|164608624|gb|ABY62603.1| DNA gyrase beta subunit [Vibrio sp. cann.2.3]
 gi|164608626|gb|ABY62604.1| DNA gyrase beta subunit [Vibrio sp. cann.2.4]
 gi|164608628|gb|ABY62605.1| DNA gyrase beta subunit [Vibrio sp. cann.2.5]
 gi|164608630|gb|ABY62606.1| DNA gyrase beta subunit [Vibrio sp. cann.2.6]
          Length = 402

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 240/404 (59%), Positives = 310/404 (76%), Gaps = 4/404 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G I++ ++ +G    PL V G+
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRKGEIFQQTYCHGEPQAPLAVVGT 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
                 T++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     
Sbjct: 61  TDTTG-TKIRFWPSDQTFTNVEFVYDILAKRLRELSFLNSGVSIILQDMR-EEDKSDHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282
           ++GGI+AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ
Sbjct: 119 FEGGIQAFVTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGG HLSG RSALTR + ++++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 179 RDGGAHLSGFRSALTRTLNTFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 299 GALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ARFDKM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|227121269|gb|ACP19326.1| GyrB [Leptospirillum ferriphilum]
          Length = 405

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 200/410 (48%), Positives = 272/410 (66%), Gaps = 7/410 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D PL 
Sbjct: 1   TVLHAGGKFNNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLA 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G      GT + F P   I     F++DTL HR REL+FLN  + I L D+ +   RE
Sbjct: 61  VFGETT-QRGTIIRFWPDMTIMETDQFSFDTLAHRFRELAFLNPVLTIYLKDEET--LRE 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNN 279
            T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL F NN
Sbjct: 118 ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLGFANN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G D REG T ++S+++P P+F
Sbjct: 178 IHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GKDVREGLTGIISVRIPGPQF 235

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A+DL 
Sbjct: 236 EGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLA 295

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILN
Sbjct: 296 KRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILN 355

Query: 460 VERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           VE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADV
Sbjct: 356 VEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADV 405


>gi|19909607|dbj|BAB86999.1| DNA gyrase subunit B [Legionella pneumophila]
          Length = 389

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 234/392 (59%), Positives = 300/392 (76%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G +YE  + +G+ ++P+  TG A N TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ FS  +F+YD L  RLRELS+LNS V I L D+R+ +    T  Y+GGI+
Sbjct: 60  TQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKK--DTFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+      +   +D I I+LAM+WNDGY E + CFTNNIPQ+DGGTH++
Sbjct: 118 AFVEHLNKNKTPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQRDGGTHMA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VES V +  + +L E+P  AK IV K++DA+  R+AARRAR++TRRKG LDIA L
Sbjct: 238 EVKPAVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG + +D +K+RYH+III
Sbjct: 358 SQEVATLITALGCGIGPEEYDPDKVRYHRIII 389


>gi|27544668|dbj|BAC55029.1| DNA gyrase B subunit [Fluoribacter bozemanae]
          Length = 389

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 238/392 (60%), Positives = 302/392 (77%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E  + NG+ D P+  TG A   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLTVRRHGKIHEQHYRNGVPDAPMAETGDAS-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ FS  +F+YD L  RLRELS+LNS V I L D+RS   R+ T  Y+GGI 
Sbjct: 60  TQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERS--QRQDTFHYEGGIT 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K  +M +   +   +DNI ++L+M+WND Y E + CFTNNIPQ+DGGTH++
Sbjct: 118 AFVEHLNKNKNTIMPTVFSMTAEKDNIVVELSMQWNDSYQETLYCFTNNIPQRDGGTHMA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRTLNNYIESEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+SVVES V +  + +L E+P  AK IV K++DA+  R+AARRAR++TRRKG LDIA L
Sbjct: 238 EVKSVVESSVAEKFNDFLLENPSSAKAIVGKIIDAARAREAARRAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML+
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLA 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG D +D +K+RYH+III
Sbjct: 358 SQEVATLITALGCGIGPDEYDPDKVRYHRIII 389


>gi|18147165|dbj|BAB83063.1| DNA gyrase subunit B [Alcanivorax sp. Tak-1]
          Length = 392

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 238/395 (60%), Positives = 303/395 (76%), Gaps = 3/395 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  LKL I+R GN+YE ++ +G+    L V GS  + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEHLKLTIRRHGNVYEQTYHHGVPQKDLDVVGST-DST 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F PS + F+   F+YD L  RLRELSFLNS V+I L+D+RS +       Y GG+
Sbjct: 60  GTAVHFRPSPETFTNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFQYDGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFVSYL++ K  L +         D I +++AM+WND Y EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 SAFVSYLNQSKSALNEVFHFQIDREDGIGVEVAMQWNDSYQENIFCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRSLNNYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +++    +L EHP EAK+IV+K++DA+  RDAAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQTMSERFQDYLLEHPGEAKMIVQKIIDAARARDAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           SSQE+ TLITALG GIG+D ++ +KLRYH+IIIMT
Sbjct: 358 SSQEVATLITALGCGIGRDEYNADKLRYHRIIIMT 392


>gi|223936083|ref|ZP_03627997.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [bacterium Ellin514]
 gi|223895305|gb|EEF61752.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [bacterium Ellin514]
          Length = 609

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 180/617 (29%), Positives = 276/617 (44%), Gaps = 62/617 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M++N + + YD   I+ L  L+ ++ R  MYIG     S    G + ++ EV+DN IDE 
Sbjct: 1   MAEN-KKNVYDESKIKTLSSLEHIRLRTGMYIGRIGDGSHHDDGCYVLLKEVIDNTIDEY 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSY 114
           + GY   + + +      +V D GRGIP             VI     ++ G K+N   +
Sbjct: 60  IMGYGKEVQIKV-EGNKVSVRDFGRGIPLGK----------VIDCVSKINTGAKYNDDVF 108

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + S GL+GVG   VNALS    +R  R G   E SF  G L      TG      GT + 
Sbjct: 109 QFSVGLNGVGTKAVNALSKDFYVRSHRGGEFSEASFKQGKLKG--EKTGKTTEPDGTFIE 166

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P   IF   +F  + ++ RLR  S+LN+ +++    +            K G+   V 
Sbjct: 167 FEPDPTIFKESEFRAEYIEKRLRHYSYLNTGLKLQFNGQT--------FQSKNGLLDLVM 218

Query: 235 Y--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG-YHENVLCFTNNIPQKDGGTHLSG 291
                 + +P+              +++     ++  Y E+   F N     DGGTHLS 
Sbjct: 219 EDLRADNSEPIYPPLHFANK-----TLEFCFTHSNSRYGESFFSFVNGQYTSDGGTHLSA 273

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R  L + +  +          K    GDD RE     ++I++ DP F SQTK KL ++E
Sbjct: 274 FREGLLKAVNEH---------SKGKYEGDDVRECMVGAVAIRLKDPLFESQTKNKLGNTE 324

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--------VRDAARRARDLTRRKG 403
           +R+ + + V + L  +   +   A+ I+ KV D            + A  RA+ +T R  
Sbjct: 325 IRTELVNTVREELLHFFNRNREVAEKIMAKVEDTRQLRKELQDVKKLARERAKAITFRIP 384

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            L          D  +   K S +FL EG SA GS    R    QAI  L+GK LNV   
Sbjct: 385 QLKD---CKVHFDKEKGKGKGSMVFLTEGQSAAGSIVSCRDVNTQAIFVLKGKPLNVWDL 441

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           + D +  + E+  L+ +L         ++  LRY K+I+ TDADVDG HIR LL+T+FFR
Sbjct: 442 KRDIVYKNDEMYNLMRSL-----DIEDNLEGLRYEKVILATDADVDGLHIRNLLITYFFR 496

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
               L+ +G LY+++ PL+ +       Y   E   +        S EI  F    G IS
Sbjct: 497 FFDQLVQDGHLYVLETPLFRVRNKDKTIYCYSEAERDTASQALGKSCEITRF-KGLGEIS 555

Query: 584 KNDLRNFIDDALKIDKL 600
             + + FI   +++ ++
Sbjct: 556 PAEFKQFIGKEMRLSQV 572



 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 58/201 (28%), Gaps = 34/201 (16%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-AEKSEKSWHGSINNSDILVKRI- 667
           +    QA+        +  ++   +  K     N + +   E +  G      IL     
Sbjct: 421 RDVNTQAIFVLKGKPLNVWDLKRDIVYKNDEMYNLMRSLDIEDNLEGLRYEKVILATDAD 480

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G+  + +L       F    +      +      +  +      I             
Sbjct: 481 VDGLHIRNLLITYFFRFFDQLVQD---GHLYVLETPLFRVRNKDKTIYCYSEAERDTASQ 537

Query: 728 SIGRKGISMQRYKGLGE-------------MNASQLWETTLNPDTRSLLRVKITDASQAD 774
           ++G K   + R+KGLGE             M                L +V+      A 
Sbjct: 538 ALG-KSCEITRFKGLGEISPAEFKQFIGKEM---------------RLSQVEYAAKPDAS 581

Query: 775 DLFSRLMGDEVEPRREFIQEN 795
           ++ S  MG     R+++I EN
Sbjct: 582 NILSFYMGRNTPERKDYIMEN 602


>gi|295388388|gb|ADG03089.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++  S  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETSSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|295388364|gb|ADG03077.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 235/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILTKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|319900695|ref|YP_004160423.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Bacteroides helcogenes P 36-108]
 gi|319415726|gb|ADV42837.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Bacteroides helcogenes P 36-108]
          Length = 625

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 178/655 (27%), Positives = 300/655 (45%), Gaps = 60/655 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           N Q+  Y  ++I+ L  ++ ++ R  MYIG     S    G++ ++ EV+DN+IDE   G
Sbjct: 11  NGQSVDYTEENIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMG 70

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I VT+  +   +V D GRGIP            E + ++L+ GGK++ K++K S G
Sbjct: 71  AGKRIEVTIEENLRVSVRDYGRGIPQGK-------LIEAV-SKLNTGGKYDSKAFKKSVG 122

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVG+  VNALSS  ++R  R+G +    F  G+L +    T S+  ++GT + F P S
Sbjct: 123 LNGVGIKAVNALSSRFEVRSYRDGKVRTAIFEKGVLQSD--ETRSSEEESGTFIFFEPDS 180

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F    F    +++ LR  ++LN+ + I    +R             G+E  +      
Sbjct: 181 TLFLNYLFQNTFVENLLRNYTYLNTGLAIIYNGQRILSRH--------GLEDLLKDNMTA 232

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +   I ++G      I++A    + Y E    F N      GGTH S L+  + + 
Sbjct: 233 --EGLYDIIHLKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSALKEHIAKT 286

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS----- 354
           I  +  K+             D R G  + ++I + +P+F  QTK KL S  +       
Sbjct: 287 IKEFYNKNQEYS---------DIRNGIVAAIAINVEEPQFEGQTKTKLGSPSMEPGGVSV 337

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGV 404
              V  F+   +  +L ++PL ++++++K+ D+   R         A  RA+        
Sbjct: 338 NKYVGDFIKTEVDNYLHKNPLVSEVMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRK 397

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L             +++ +   +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 398 LRDCRFHLNDGKGKDKETESC-IFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLT 456

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR L++TFF + 
Sbjct: 457 KKVVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLIITFFLQF 511

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   E+     +     + EI  F    G IS 
Sbjct: 512 FPDLIKKGHVYILQTPLFRVRNKKKTNYCYTEDERIKSIEELGPNPEITRF-KGLGEISP 570

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 571 DEFKHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIINNLVIEEDLA 624


>gi|68165250|gb|AAY87585.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165252|gb|AAY87586.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 201/359 (55%), Positives = 268/359 (74%), Gaps = 3/359 (0%)

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 60

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +F
Sbjct: 61  VNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIEF 119

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ +  
Sbjct: 120 HYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKV 178

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K
Sbjct: 179 FHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDK 238

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ 
Sbjct: 239 EGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD 298

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 299 FLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 357


>gi|295388315|gb|ADG03053.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 235/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSERVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|148536440|gb|ABQ85772.1| DNA gyrase subunit B [Vibrio mimicus]
          Length = 391

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 305/393 (77%), Gaps = 3/393 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGETE-RTGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AF
Sbjct: 60  VRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 239 VKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           QE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 391


>gi|148470274|gb|ABQ66084.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 206/423 (48%), Positives = 290/423 (68%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++G  +   +  G  D
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL VTG + + TGT + F P   I     F+YD L HR RELSFLN S+ I+L ++ + 
Sbjct: 61  SPLAVTG-SSDRTGTAIRFYPDLTIMETDQFSYDVLAHRFRELSFLNPSLTITLAEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG-YHENVLC 275
             RE     +GGI +F+S+++ +K+ L +     +   +  + +++ ++ D  Y E +L 
Sbjct: 119 -LRESVFHDEGGIRSFLSFVNENKRVLHEPLFFRKVLENGATFEISFQYQDTTYAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GG+H+ G RSALT+ +  ++     +K ++  V G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEE--VKGEDIREGLSAIVSIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+++ L   LE+    A+ I  K + ++  R+AAR A
Sbjct: 236 NPQFEGQTKAKLGSSWVAGAMETFLSESLEDALEKQGAIARAIADKAILSAQAREAAREA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+ +  +K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKTKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|295388282|gb|ADG03037.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + +  S +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKPSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|164608590|gb|ABY62586.1| DNA gyrase beta subunit [Aliivibrio logei]
 gi|164608592|gb|ABY62587.1| DNA gyrase beta subunit [Aliivibrio logei]
 gi|164608594|gb|ABY62588.1| DNA gyrase beta subunit [Aliivibrio logei]
          Length = 397

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 238/399 (59%), Positives = 306/399 (76%), Gaps = 4/399 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G+   PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTD 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     ++G
Sbjct: 60  TTGTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFMFEG 118

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           GI+AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DG
Sbjct: 119 GIKAFVTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+
Sbjct: 179 GAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKD 238

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG L
Sbjct: 239 KLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGAL 298

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARF
Sbjct: 299 DIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 358

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           DKM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 DKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMT 397


>gi|295388327|gb|ADG03059.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 236/396 (59%), Positives = 311/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G A + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDA-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 394


>gi|332293167|ref|YP_004431776.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171253|gb|AEE20508.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 653

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 179/663 (26%), Positives = 292/663 (44%), Gaps = 63/663 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
            Q + Y+ D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN IDE + G 
Sbjct: 36  TQETQYNEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILVKEVLDNCIDEFVMGA 95

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V++  +    V D GRGIP            +V+ ++++ GGK++ +++K S GL
Sbjct: 96  GKTIEVSIQGE-KVIVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKKSVGL 146

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN-PLVVTGSAGNDTGTEVTFLPSS 179
           +GVG   VNALSS+ ++   R+       F  G L N  L          GT+V+F+P +
Sbjct: 147 NGVGTKAVNALSSYFRVESTRDAKSASAEFARGELTNQDL--LDETSRRRGTKVSFVPDA 204

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF    F  + ++  ++   +LN  + I    ++         F + G++  +S     
Sbjct: 205 EIFKNFKFRSEYVERLIKNYVYLNPGLTIVFNGEK--------FFSENGLKDLLSESIAE 256

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
              L    I ++G    ++I         Y E    F N      GGTH +  R ++ + 
Sbjct: 257 GDRLY-DIIHLKGEDIEVAIT---HSKSQYSEEYHSFVNGQNTTQGGTHQAAFRESIVKT 312

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------- 352
           I  +  KS+ +          D R+   S +SIK+ +P F SQTK KL S+++       
Sbjct: 313 IREFYNKSYEAS---------DIRKSIVSAISIKVMEPVFESQTKTKLGSTDMGGELPTV 363

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA- 408
           R+ +  F+   L  +L ++   A  + +K+L A   R      R       +K  L    
Sbjct: 364 RTYINDFLKTALDNFLHKNTPVADALQRKILQAERERKDLSGIRKLAKDRAKKANLHNKK 423

Query: 409 --SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
                  L D  +    ++ LF+ EGDSA GS  + R    QA+  L+GK LN       
Sbjct: 424 LRDCRIHLTDSKKERNLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNSYGLSKK 483

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L  AL          I  LRY+ I+I TDADVDG HIR LL+TFF +  P
Sbjct: 484 IVYENEEFNLLQAALNI-----EESIEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFP 538

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G LYI++ PL+ +   K   Y   ++   D +       EI  F    G IS ++
Sbjct: 539 ELIKEGHLYILETPLFRVRNKKETVYCYSDQEKADAMARLGAKPEITRF-KGLGEISPDE 597

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
            + FI + +          P      +    +   +  ++  +    +   L   L+ + 
Sbjct: 598 FQFFIGEDI-------RLAPVMLDKALMIEELLSFYMGKNTPDRQKFIIENLKVELDRVV 650

Query: 647 EKS 649
           E+ 
Sbjct: 651 EED 653


>gi|295979563|dbj|BAJ07454.1| DNA gyrase subunit B [Porphyrobacter sp. MBIC3897]
          Length = 321

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 179/321 (55%), Positives = 228/321 (71%), Gaps = 15/321 (4%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM++EV DNAIDE+L G+ D++ + LN DGS +V DNGRGIPT +H EEG+
Sbjct: 1   DTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPTGMHSEEGV 60

Query: 94  SAAEVIMTRLHAGGKF----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           SAAEVIMT+LHAGGKF    +  +YKVSGGLHGVGVSVVNALS WL+L I REG  + M 
Sbjct: 61  SAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELTIWREGKEHWMR 120

Query: 150 FINGILDNPLVVTGSAG----------NDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRE 198
           F +G    PL V G A              GT VTF  S D F    +F+++ L+HR RE
Sbjct: 121 FEHGDAVAPLEVKGDAPRSDRNADANGFKKGTRVTFKASHDTFKNVTEFDFEKLEHRYRE 180

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           L+FLNS V+I L DKR  +  E  ++Y+GGI AFV YLDR+K+ L+  PI +   +D I 
Sbjct: 181 LAFLNSGVRIKLRDKRHEDVVEHDLYYEGGIAAFVKYLDRNKQALIPEPIAVSAEKDGIG 240

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           ID+A+ WND Y+ENVL FTNNIPQ+DGGTHLS  R+ALTR + +Y E+S   KK+K S+ 
Sbjct: 241 IDVALEWNDSYYENVLAFTNNIPQRDGGTHLSAFRAALTRTLNNYAERSGMLKKEKVSLS 300

Query: 319 GDDCREGFTSVLSIKMPDPRF 339
           G+D REG T+++S+K+PDP+F
Sbjct: 301 GEDMREGLTAIVSVKLPDPKF 321


>gi|300772127|ref|ZP_07081997.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300760430|gb|EFK57256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 617

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 170/610 (27%), Positives = 279/610 (45%), Gaps = 55/610 (9%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           ++Y+ DSI+ L   + ++ RP MYIG     S    G++ ++ EV+DN+IDE + G   I
Sbjct: 2   TTYNEDSIRSLDWKEHIRLRPGMYIGKLGDGSAYDDGIYVLLKEVVDNSIDEFVMGAGKI 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +++N +   +V D GRGIP         S  +V+ ++++ GGK++ K+++ S GL+GV
Sbjct: 62  IDISVN-ENKVSVRDYGRGIPIG-------SVVDVV-SKINTGGKYDSKAFQKSVGLNGV 112

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G   VNALS+   ++  R+G      F  G L              GT V+F P   IF 
Sbjct: 113 GTKAVNALSTQFTVQSYRQGETRIAQFSKGELVTD--EKKETTQRNGTAVSFYPDDSIFR 170

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +  + +++ +    FLNS + I+   ++           + G++  +      +   
Sbjct: 171 NYKYRMEFVENMIWNYVFLNSGLTINFNGQK--------FISENGLKDLLERNIDTESMR 222

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I ++G      I++A+     Y E    F N      GGTH +  R AL + I  +
Sbjct: 223 YP-IIHLKGED----IEIALTHGQQYGEEYYSFVNGQHTTQGGTHQAAFREALVKTIREF 277

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SEVRSVV 356
            +K F +          D R      ++IK+ +P F SQTK KL S         VR+ +
Sbjct: 278 YKKDFDAA---------DVRSSIIGAIAIKVQEPVFESQTKTKLGSQSIGPDGPTVRTFI 328

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDI--ASLP 411
             F+   L  +L  +   A  ++K++L +   R      +   +   +K  L        
Sbjct: 329 NDFLKKALDDYLHRNSDTADALLKRILQSERERKDIAGIKKLANERAKKASLHNRKLRDC 388

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
                      +++ LF+ EGDSA GS  + R  + QA+  L+GK LN        +  +
Sbjct: 389 KVHFSDKNERNQETTLFITEGDSASGSITKSRDVQTQAVFSLKGKPLNSYGMSKKIVYEN 448

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +E   L  AL    G     ++ LRY+ I+I TDADVDG HIR LLLTFF +  P L+  
Sbjct: 449 EEFNLLQHALNIEDG-----LDGLRYNNIVIATDADVDGMHIRLLLLTFFLQFFPDLVKA 503

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G + I++ PL+ +   K   Y   +E  +  +       EI  F    G IS ++   FI
Sbjct: 504 GHVAILQTPLFRVRNKKETIYCYSDEERQRAIAKLGAKPEITRF-KGLGEISPSEFGLFI 562

Query: 592 DDALKIDKLI 601
              +++D +I
Sbjct: 563 GKDIRLDPVI 572


>gi|91217688|ref|ZP_01254645.1| DNA topoisomerase IV subunit B [Psychroflexus torquis ATCC 700755]
 gi|91184192|gb|EAS70578.1| DNA topoisomerase IV subunit B [Psychroflexus torquis ATCC 700755]
          Length = 631

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 185/670 (27%), Positives = 305/670 (45%), Gaps = 68/670 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M+   +   Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN+IDE 
Sbjct: 6   MAQETK---YTEDNIKSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNSIDEF 62

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I V++       V D GRGIP            +V+ ++++ GGK++  ++K 
Sbjct: 63  VMGSGKTIEVSIQST-KVNVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDTNAFKK 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALSS+ ++   R+G      F  G L N       +    GT+VTF+
Sbjct: 114 SVGLNGVGTKAVNALSSYFRVESSRDGKSVSAEFDQGNLINK-EDLEESSRRRGTKVTFI 172

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   IF    +  + ++  L+   +LN  + I    ++         + + G++  +S  
Sbjct: 173 PDEVIFKKYSYRNEYIEKMLKNYVYLNPGLTIMFNGEK--------FYSEEGLKDLLSDR 224

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            R +  L    I ++G+   ++I  +      Y E    F N      GGTH +  R A+
Sbjct: 225 IREEDRLFP-IIHLRGNDIEVAITFSKAQ---YSEEYHSFVNGQNTTQGGTHQTAFREAI 280

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + I  + +K+             D R+   S +SIK+ +P F SQTK KL S+++    
Sbjct: 281 VKTIRDFYKKN---------FEPSDIRKSIVSAVSIKVMEPIFESQTKTKLGSTDMGEDL 331

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRR 401
              R+ +  F+   L  +L ++   A+ + +K+L A   R         A  RA+  +  
Sbjct: 332 PSVRTFILDFMKQELDNYLHKNNETAEQLHRKILRAEKERKDLSGIRKLAKDRAKKSSVH 391

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
              L        L D  +    ++ LF+ EGDSA GS  + R    QA+  L+GK LN  
Sbjct: 392 NKKLRD--CRIHLEDTKKEGYLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNSY 449

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
                 +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR L++TFF
Sbjct: 450 GLSKKIVYENEEFNLLQAALNI-----EDSLEDLRYNNIVIATDADVDGMHIRLLIITFF 504

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
            +  P LI  G LYI++ PL+ +   K   Y   E    + L     + EI  F    G 
Sbjct: 505 LQFFPELIKEGHLYILQTPLFRVRDKKQTFYCYSETERREALKKLRGNPEITRF-KGLGE 563

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
           IS ++ +NFI D +++D ++ D Y +  +       I   +  ++  +    +   L   
Sbjct: 564 ISPDEFKNFIGDDIRLDPVMLDKYKSIPE-------ILEFYMGKNTPDRQNFIIENLKVE 616

Query: 642 LNFIAEKSEK 651
           ++ + E  E+
Sbjct: 617 IDLVEEVKEE 626


>gi|68165240|gb|AAY87580.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 201/359 (55%), Positives = 268/359 (74%), Gaps = 3/359 (0%)

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 60

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +F
Sbjct: 61  VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTFTNIEF 119

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ +  
Sbjct: 120 HYDILAKRLRELSFLNSGVSIKLSDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKV 178

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K
Sbjct: 179 FHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDK 238

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ 
Sbjct: 239 EGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD 298

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 299 FLAENPSEAKHVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 357


>gi|307939306|gb|ADN95844.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 437

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 211/438 (48%), Positives = 294/438 (67%), Gaps = 21/438 (4%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF++ SYKVSGGLHGVGV  VNALS+ LK+ ++R G+ YE  +  GI    +
Sbjct: 1   MTVLHAGGKFDKGSYKVSGGLHGVGVXCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---- 215
              G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R     
Sbjct: 61  KEVGLSE-EHGTEVQFLPDATIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLEG 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
              R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV 
Sbjct: 120 GVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVY 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+
Sbjct: 180 SYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+
Sbjct: 240 QEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLR
Sbjct: 300 AKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLRYHK 499
           GKILNVE+A+  ++L ++EI  +ITALG                G      + +KLRYHK
Sbjct: 360 GKILNVEKAQEHRILENEEIKNMITALGVSFNERKSLAFTTDDDGTESGPLNFSKLRYHK 419

Query: 500 IIIMTDADVDGAHIRTLL 517
           +IIMT ADVDG+HIRTLL
Sbjct: 420 VIIMTXADVDGSHIRTLL 437


>gi|307939288|gb|ADN95835.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 436

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 209/437 (47%), Positives = 292/437 (66%), Gaps = 21/437 (4%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT   AGGKF++ SYKVSGGLHGVGVS VNALS+ LK+ ++R G+ YE  +  GI    +
Sbjct: 1   MTVXXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---- 215
              G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R     
Sbjct: 61  KEVGLSE-EHGTEVQFLPDASIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLEG 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
              R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV 
Sbjct: 120 GVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVY 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+
Sbjct: 180 SYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+
Sbjct: 240 QEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLR
Sbjct: 300 AKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLRYHK 499
           GKILNVE+A+  ++L ++EI  +ITALG                G      + +KLRYHK
Sbjct: 360 GKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSKLRYHK 419

Query: 500 IIIMTDADVDGAHIRTL 516
           +IIMTDADVDG+HIRT 
Sbjct: 420 VIIMTDADVDGSHIRTC 436


>gi|257168280|gb|ACV40274.1| DNA gyrase subunit B [Yersinia ruckeri]
 gi|257168282|gb|ACV40275.1| DNA gyrase subunit B [Yersinia ruckeri]
 gi|257168284|gb|ACV40276.1| DNA gyrase subunit B [Yersinia ruckeri]
 gi|257168286|gb|ACV40277.1| DNA gyrase subunit B [Yersinia ruckeri]
          Length = 279

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 153/281 (54%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL + G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKMVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +       Y+GGI+AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RNDKE--DHFHYEGGIKAFVEYLNKNKTPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|330996821|ref|ZP_08320690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329572264|gb|EGG53923.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 655

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 173/694 (24%), Positives = 294/694 (42%), Gaps = 71/694 (10%)

Query: 1   MSDNIQNSS------YDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLD 50
           M++  + +       Y  D I+ L  ++ ++ RP MYIG     S    G++ ++ EV+D
Sbjct: 1   MAEEEKPNEAPILTEYTEDHIRHLSDMEHIRTRPGMYIGKLGDGSHAEDGIYVLLKEVID 60

Query: 51  NAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           N+IDE        I +T+  +   +V D GRGIP        I A  +    L+ GGK++
Sbjct: 61  NSIDEFKMNAGRRIEITVEDNLRVSVRDYGRGIPLGKL----IEAVSM----LNTGGKYD 112

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K++K S GL+GVGV  VNALSS  ++R  R+G +   +F  GIL +    T    ++ G
Sbjct: 113 SKAFKKSVGLNGVGVKAVNALSSHFEVRSHRDGEMRRATFERGILTS--ESTEPTADENG 170

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F P   +F    F  + ++  LR  ++LN+ + I    +R           + G+ 
Sbjct: 171 TFIYFEPDCALFKNYTFRTEFIETMLRNYTYLNTGLTIMFNGRRI--------HSRNGLV 222

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             ++    +    +   I ++G      I++A      Y E    F N      GGTH S
Sbjct: 223 DLLNDNMTN--DGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQS 276

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS- 349
             +  +   I  +  K+F            D R G  + +++ + +P F SQTK KL S 
Sbjct: 277 AFKKHIAETIKDFSGKNFDYG---------DIRNGLVAAIAVNIEEPLFESQTKIKLGSL 327

Query: 350 -------SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA------RRAR 396
                    +   V  FV + +  +L ++   A II++K+ +    R A        R R
Sbjct: 328 TTIPDGGISIDKFVGDFVKEQVDNYLHKNTDIADIIIQKITENEKERKAIAGVTKLARER 387

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
                     +      L D      + S +F+ EGDSA GS  + R    QA+  LRGK
Sbjct: 388 AKKANLHNRKLRDCRIHLNDAKGDLKEDSSIFITEGDSASGSITKSRDVTTQAVFSLRGK 447

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
            LN        +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L
Sbjct: 448 PLNCFGLTKKVVYENEEFNLLQAALNIEDG-----LDGLRYNKVIVATDADVDGMHIRLL 502

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           ++TFF +  P LI  G +YI++ PL+ +   K+    +  + LE+               
Sbjct: 503 MITFFLQFFPELIKKGHVYILQTPLFRVRNRKNKIGKQKLKELEEEAKAAKSDFITRYCY 562

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA- 635
             +  ++  +      +  +    + +  P+  K FI   +     +     ++   L  
Sbjct: 563 SDEERVAAIEALGPDPEITRFKG-LGEISPDEFKHFIGPDIRLEQVSLHKSDQVKELLEY 621

Query: 636 -------SKLANRLNFIAEKSEKSWHGSINNSDI 662
                   +    +N +  + +++       + I
Sbjct: 622 YMGKNTMERQNFIINNLVIEEDRAEEDETAETAI 655


>gi|126035256|gb|ABN72381.1| gyrase B subunit [Enterobacter cloacae]
          Length = 394

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 241/397 (60%), Positives = 307/397 (77%), Gaps = 4/397 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG   + TG
Sbjct: 1   NNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDA 394


>gi|257168240|gb|ACV40253.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 279

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 153/281 (54%), Positives = 199/281 (70%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F P    F+    F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DQTGTTVRFWPRFQTFTNTTEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +       Y+GGI+AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168302|gb|ACV40287.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 153/281 (54%), Positives = 200/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H+EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHEEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL + G   + TGT V F PS   F +  +F Y+ L  RLREL FLNS V I L DK
Sbjct: 121 PQAPLKMVGET-DLTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELWFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI AFV YL ++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|332520465|ref|ZP_08396927.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Lacinutrix algicola 5H-3-7-4]
 gi|332043818|gb|EGI80013.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Lacinutrix algicola 5H-3-7-4]
          Length = 619

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 181/666 (27%), Positives = 296/666 (44%), Gaps = 66/666 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS+  +   Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN+IDE 
Sbjct: 1   MSEQTK---YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSPDDGIYILLKEVLDNSIDEF 57

Query: 57  LEGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           + G    I +++   GS   V D GRGIP            +V+ ++++ GGK++ K++K
Sbjct: 58  VMGAGKTIEISVQ--GSKVIVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSKAFK 107

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            S GL+GVG   VNALSS+ ++   R+G      F  G L +            GT+V+F
Sbjct: 108 KSVGLNGVGTKAVNALSSYFRVESSRDGKSASADFEQGNLVDE-EFLEETSRRKGTKVSF 166

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +P   IF    F  + +   L+   +LN  + I    ++         + + G++  ++ 
Sbjct: 167 IPDEIIFKNYKFRSEYVVKMLKNYVYLNPGLTIVFNGEK--------YYSENGLKDLLAE 218

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                  L    I ++G    +++         Y E    F N      GGTHL+  R A
Sbjct: 219 KTTETDLLYP-IIHLRGDDIEVALT---HSKTQYSEEYNSFVNGQNTTQGGTHLTAFREA 274

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV--- 352
           + + I  +  K + +          D R+   S ++IK+ +P F SQTK KL S+++   
Sbjct: 275 VVKTIRDFYGKQYDAS---------DIRKSIISAIAIKVMEPVFESQTKTKLGSTDMGGD 325

Query: 353 ----RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVL 405
               R+ +  F+   L  +L ++   A+ I +K+L A   R      R       +K  L
Sbjct: 326 LPTVRTYINDFLKTHLDNYLHKNSDTAEKIQRKILQAERERKELSGIRKLAKDRAKKASL 385

Query: 406 DIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                        D       ++ LF+ EGDSA GS  + R    QA+  L+GK LN   
Sbjct: 386 HNKKLRDCRVHFGDTKNERNLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNCYG 445

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
                +  ++E   L  AL          +  LRY+ ++I TDADVDG HIR LL+TFF 
Sbjct: 446 LTKKIVYENEEFNLLQAALNI-----EESLEDLRYNNVVIATDADVDGMHIRLLLITFFL 500

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           +  P +I  G LYI++ PL+ +   K   Y   EE   D +       EI  F    G I
Sbjct: 501 QFFPEVIKEGHLYILQTPLFRVRNKKETIYCYSEEERRDAIEKLKPKPEITRF-KGLGEI 559

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           S ++  +FI + +++D ++ D   + D+       +   +  ++       +   L   L
Sbjct: 560 SPDEFVHFIGEDIRLDPVMLDDNMSIDE-------LLSFYMGKNTPTRQEFIIDNLKVEL 612

Query: 643 NFIAEK 648
           + I E 
Sbjct: 613 DLIEED 618



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 26/140 (18%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +L  +    F  +  +     +      +  +    + I         D I  + + 
Sbjct: 490 HIRLLLITFFLQFFPEVIKE--GHLYILQTPLFRVRNKKETIYCYSEEERRDAIEKL-KP 546

Query: 733 GISMQRYKGLGEMNASQ----------LWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
              + R+KGLGE++  +          L     +P       V + D    D+L S  MG
Sbjct: 547 KPEITRFKGLGEISPDEFVHFIGEDIRL-----DP-------VMLDDNMSIDELLSFYMG 594

Query: 783 DEVEPRREFIQENSLPSALD 802
                R+EFI +N L   LD
Sbjct: 595 KNTPTRQEFIIDN-LKVELD 613


>gi|95105514|gb|ABF54924.1| DNA gyrase subunit B [Photobacterium leiognathi]
          Length = 391

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 232/393 (59%), Positives = 305/393 (77%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G   ++TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     Y+GGI+
Sbjct: 60  TRIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFMYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A 
Sbjct: 239 SEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITA+G GIG+D ++ +KLRYH III
Sbjct: 359 SSQEVATLITAMGCGIGRDEYNPDKLRYHNIII 391


>gi|312128865|ref|YP_003996205.1| DNA topoisomerase type iia subunit b region 2 domain protein
           [Leadbetterella byssophila DSM 17132]
 gi|311905411|gb|ADQ15852.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Leadbetterella byssophila DSM 17132]
          Length = 627

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 178/629 (28%), Positives = 283/629 (44%), Gaps = 61/629 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +  ++YD  SI+ L   + ++ RP MYIG     S    G++ ++ EV+DN IDE   G+
Sbjct: 1   MAENNYDESSIRSLDWKEHIRLRPGMYIGKLGDGSAPDDGIYVLLKEVIDNCIDEYAMGH 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V+++ +G  +V D GRGIP            +V+ ++++ G K++ K+++ + GL
Sbjct: 61  GKAIEVSID-EGKVSVRDYGRGIPLGK-------VVDVV-SKINTGAKYDSKAFQKAVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS+ K+   REG +    F  G+L +            GT V F P + 
Sbjct: 112 NGVGTKAVNALSSYFKVTAVREGEMKTAEFERGVLISE-SEIEKTDAKNGTHVIFEPDNT 170

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F    F    +++ +    +LNS + I L  K+         +   G+   +       
Sbjct: 171 VFKNYHFIGQYIENMIWNYCYLNSGLSIYLNRKK--------FYSANGLLDLLLRKTDES 222

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
                  I ++G      I++A+   + Y E    F N      GGTHLS  + A+ + +
Sbjct: 223 SLRYP-IIHLKGED----IEMALTHGNQYGEEYYSFVNGQNTTQGGTHLSAFKEAIVKTV 277

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS---------SE 351
             +  K             +D R+     +++++ +P F SQTK KL S           
Sbjct: 278 RDHYGK---------DYASEDVRQSIIGAIAVRIQEPVFESQTKTKLGSNNISLDENAPT 328

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKG 403
           VR+ V  FV + L  +L  HP     + +++  +   R         A  RA+       
Sbjct: 329 VRTFVNDFVKEHLDNYLHMHPDIKDALKRRIEQSERERKELAGVKKIANERAKKANLHNR 388

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            L        L D        + LF+ EGDSA GS  + R+ E QA+  LRGK LN    
Sbjct: 389 KLRD--CKYHLTDEKFEGRLDTMLFITEGDSASGSITKARNPETQAVFSLRGKPLNCYGL 446

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL    G     I  LRY++I+I TDADVDG+HIR LLLTFF +
Sbjct: 447 SKKVVYENEEFNLLQHALDIENG-----IETLRYNQIVIATDADVDGSHIRLLLLTFFLQ 501

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P L+  G L+I++ PL+ +   K   Y   +E  +  +       EI  F    G IS
Sbjct: 502 FFPDLVREGHLFILQTPLFRVRNKKETIYCYSDEEKQMAINKLGGKPEITRF-KGLGEIS 560

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
            ++   FI+  +K+D +I +      K  
Sbjct: 561 PHEFEGFINKDIKLDPVILEKESTIPKLL 589


>gi|163789020|ref|ZP_02183464.1| DNA topoisomerase IV, subunit B [Flavobacteriales bacterium ALC-1]
 gi|159875684|gb|EDP69744.1| DNA topoisomerase IV, subunit B [Flavobacteriales bacterium ALC-1]
          Length = 619

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 171/612 (27%), Positives = 278/612 (45%), Gaps = 54/612 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYAD 62
            S+Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN+IDE + G   
Sbjct: 4   QSNYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSPDDGIYILLKEVLDNSIDEFVMGAGK 63

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +++  +    V D GRGIP            +V+ ++++ GGK++ K++K S GL+G
Sbjct: 64  SIEISIQGE-RVIVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSKAFKKSVGLNG 114

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG   VNALSS+ ++   R+G      F  G L              GT+V+F+P   IF
Sbjct: 115 VGTKAVNALSSYFRVESTRDGKSASAEFELGELK-DQEFLEDTSRRKGTKVSFVPDDSIF 173

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               +  + +   L+   +LN  + I    ++         F + G++  +S        
Sbjct: 174 KNYKYRNEYVVKMLKNYVYLNPGLTIVFNGEK--------YFSENGLKDLLSENINESDM 225

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    I ++G    ++I         Y E    F N      GGTHL+  R ++ + +  
Sbjct: 226 LYP-IIHLRGDDIEVAIT---HSKTQYSEEYHSFVNGQNTTQGGTHLAAYRESIVKTVRE 281

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-------V 355
           +  K++ +          D R+   + ++IK+ +P F SQTK KL S+++          
Sbjct: 282 FYGKNYDAS---------DIRKSVVTAIAIKVMEPVFESQTKTKLGSTDMGGGLPTVRAY 332

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA---S 409
           +  FV   L  +L ++P  A+ I +K+L A   R      R       +K  L       
Sbjct: 333 INDFVKTYLDNFLHKNPDTAEKIQRKILQAERERKELSGIRKLAKDRAKKASLHNKKLRD 392

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
                 D       ++ LF+ EGDSA GS  + R    QA+  L+GK LN        + 
Sbjct: 393 CRVHFGDTKNERNLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNCYGLSKKIVY 452

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            ++E   L  AL          +  LRY+ ++I TDADVDG HIR LL+TFF +  P +I
Sbjct: 453 ENEEFNLLQAALNI-----EESLEDLRYNNVVIATDADVDGMHIRLLLITFFLQFFPEVI 507

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
             G LYI++ PL+ +   K   Y   EE   + +       EI  F    G IS ++  +
Sbjct: 508 KEGHLYILQTPLFRVRNKKETIYCYSEEERREAIQKLKPKPEITRF-KGLGEISPDEFVH 566

Query: 590 FIDDALKIDKLI 601
           FI + +++D ++
Sbjct: 567 FIGEDIRLDPVM 578



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 26/141 (18%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +L  +    F  +  +     +      +  +    + I         + I  + + 
Sbjct: 490 HIRLLLITFFLQFFPEVIKE--GHLYILQTPLFRVRNKKETIYCYSEEERREAIQKL-KP 546

Query: 733 GISMQRYKGLGEMNASQ----------LWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
              + R+KGLGE++  +          L     +P       V +      ++L S  MG
Sbjct: 547 KPEITRFKGLGEISPDEFVHFIGEDIRL-----DP-------VMLDKDMSIEELLSFYMG 594

Query: 783 DEVEPRREFIQENSLPSALDI 803
                R+EFI EN L   LDI
Sbjct: 595 KNTPTRQEFIIEN-LKVELDI 614


>gi|147917481|gb|ABQ52593.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 392

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 232/394 (58%), Positives = 307/394 (77%), Gaps = 3/394 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 392


>gi|285804186|gb|ADC35601.1| DNA gyrase subunit B [Geobacillus thermoglucosidasius]
          Length = 419

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 225/422 (53%), Positives = 296/422 (70%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS  L++ + R+G I+   +  G+  
Sbjct: 1   EVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSEELEVYVHRDGKIHYQKYQRGVPC 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L V G   + TGT V F P  +IF+    F+Y+TL  RLREL+FLN  ++I+L DKR 
Sbjct: 61  TDLQVVGET-DRTGTTVHFKPDPEIFTETTEFDYETLATRLRELAFLNRGLKITLEDKRV 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
              +     Y+GGI+ +V +L+R ++ L + PI I G RD I +++A ++ND Y  N+  
Sbjct: 120 ENRKNE-YCYEGGIQPYVKHLNRTREVLHEEPIYIIGERDGIYVEIAFQYNDSYSSNIYS 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI   +GGTH SG + ALTR I  Y  K    K +  ++ G+D REG T+++SIK P
Sbjct: 179 FVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKDNDPNLTGEDVREGLTAIVSIKHP 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL +S+ R+V ++  ++    +L E+P  A+ IV+K + A+  R AA++A
Sbjct: 239 APQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LTRRK  L+I++LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRG
Sbjct: 299 RELTRRKSALEISNLPGKLADCSSKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KI+NVE+AR DK+LS+ E+  +ITALGTGIG+D FDI K RYHKIIIMTDADVDG+HIRT
Sbjct: 359 KIINVEKARLDKILSNNEVRAIITALGTGIGED-FDITKARYHKIIIMTDADVDGSHIRT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|295388354|gb|ADG03072.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S++++   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDEEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|46445984|ref|YP_007349.1| DNA topoisomerase IV subunit B [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399625|emb|CAF23074.1| putative DNA gyrase (topoisomerase) chain B [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 606

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 170/609 (27%), Positives = 276/609 (45%), Gaps = 50/609 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
            +YD  +++ L  L  ++ R  MYIG     +    G++ M+ EV+DN++DE +  +   
Sbjct: 3   KNYDESTVKTLDALAHIRLRSGMYIGRLGDGTNPDDGIYIMLKEVVDNSVDEFIMKHGKK 62

Query: 64  ITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I + L+ D S  +V D GRGIP            E + ++++ G K+N   ++ S GL+G
Sbjct: 63  IIIELDEDLSRVSVRDFGRGIPLGK-------VVECV-SQINTGAKYNDDVFQFSVGLNG 114

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG   VNALSS   ++  R+G   E  F  G+L       G    + GT V F+P  +IF
Sbjct: 115 VGTKAVNALSSHFVVKSYRDGEFVEAHFSQGLLKQ--EKKGKTKEENGTYVEFIPDPEIF 172

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F  + +  R+   ++LN+ + +    +              G+   ++      + 
Sbjct: 173 KKYRFQKEYILKRIWHYAYLNTGLILQFNGEEIQSKY--------GLLDLLNAEVT--ED 222

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +  PI  +G      ++LA      Y E+   F N     DGGTHLS  R  + + +  
Sbjct: 223 RLYEPIHYRGKF----LELAFLHTHSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVNE 278

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + +K+           G D REG    + +K+ DP F SQTK KL ++E+R+ +   V +
Sbjct: 279 FTKKN---------FQGVDVREGIVGTILVKVKDPIFESQTKNKLGNNELRAPIVQEVKE 329

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC----- 417
            +   L +HP  A  +V++++    +R           ++    I+    KL D      
Sbjct: 330 AVVNLLHKHPDVANRLVERIVFNEKLRKELASV-KKEAKEKQKKISFKIPKLRDSKYHYQ 388

Query: 418 -SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
                 + + +FL EGDSA  S    R    QA+  LRGK LNV   + D++  ++E+  
Sbjct: 389 DRSVHSENTMIFLTEGDSASASVVASRDPLIQAVYSLRGKPLNVFGMKLDQLYKNEEMFN 448

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L+ AL         +I KLRY+K+I+ TDADVDG HIR L++TFF      L+ NG LYI
Sbjct: 449 LMNALNI-----EDEIEKLRYNKVILATDADVDGMHIRNLMITFFLTYFEGLVLNGHLYI 503

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           ++ PL+ +       Y  +EE     ++      E+  F     +      +    D   
Sbjct: 504 LETPLFKVRNKVQTIYCYNEEEKNKAVVKLKKQVEVTRFKGLGEISPSEFKQFIGKDIRL 563

Query: 597 IDKLIKDFY 605
           I   I  F 
Sbjct: 564 IPVTIHSFS 572


>gi|330837757|ref|YP_004412398.1| DNA topoisomerase IV subunit B [Spirochaeta coccoides DSM 17374]
 gi|329749660|gb|AEC03016.1| DNA topoisomerase IV subunit B [Spirochaeta coccoides DSM 17374]
          Length = 606

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 178/650 (27%), Positives = 292/650 (44%), Gaps = 59/650 (9%)

Query: 1   MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAI 53
           M+ + +   +++YD   IQ L  L+ ++ RP MYIG          G++ ++ E++DN+I
Sbjct: 1   MATDPKIRRDTTYDESKIQTLSALEHIRLRPGMYIGRLGDGRHVDDGIYVLLKEIVDNSI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE + G    ++V+L  D +  V D+GRGIP      E +S        ++ G K+N + 
Sbjct: 61  DEFIMGNGTRVSVSL-RDKTVMVRDHGRGIPLGK-LVECVS-------VINTGAKYNDEV 111

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           ++ S GL+GVG   VNALSS   +R  R G   E  F  GIL +     G A    GT +
Sbjct: 112 FQFSVGLNGVGTKAVNALSSHFVVRAFRAGIFAEAVFERGILKS--EKKGKADEADGTYI 169

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F+P  DIFS   FN D +  R+   ++LN+ + +    K              G+   +
Sbjct: 170 EFIPDHDIFSDYTFNPDYIVERMWNYAYLNTGLTMEFNGKS--------YRSAHGLLDLL 221

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                  +      I  +G +   +          Y E    + N     DGGTH++  +
Sbjct: 222 EKEVGDDEMY--KVIHYRGKQMEFAFT---HTPGSYGETYFSYVNGQHTNDGGTHVAAFK 276

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L + I  + +K++            D REG    +++K+ +P F SQTK KL ++E+R
Sbjct: 277 EGLLKGINDHFKKNW---------SAQDVREGLIGAIAVKLQNPLFESQTKNKLGNTEIR 327

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + +   V + + ++L  +P +A  I  K++    +R      +  T R     ++    K
Sbjct: 328 TWIVQEVKEAVESFLLRNPDDASRINTKIIQNEKLRKELNEVKK-TARDAARKVSLNIPK 386

Query: 414 LADCSER--------DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           L DC             ++S +FL EGDSA G+  + R    QA+  LRGK+ NV   + 
Sbjct: 387 LKDCKYHLNQGSHPEQGEQSMIFLTEGDSASGTITKVRDVRTQAVFSLRGKVPNVCGKKK 446

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            ++  + E+  ++ ALG        DI+ LRY K+II TDAD DG HIR LL+T+F    
Sbjct: 447 TEIYKNAELYNMMVALGI-----ENDISGLRYGKVIIATDADNDGFHIRILLMTYFLTYF 501

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
             L+ +G L+I++ PL+ +   +   Y   E S ++ +                G I  +
Sbjct: 502 EDLVLSGRLFILETPLFRVRNKQKTIYCYTEVSRDEAMAQLR--GAEVTRFKGLGEIDPS 559

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
           +   FI + +K+  +         K     A   G    E    I  +L 
Sbjct: 560 EFGQFIGEDMKLVPVSISSMNEAHKAV---AFYMGGNTPERRDFIVENLI 606


>gi|148616458|gb|ABQ96972.1| GyrB [Nocardiopsis kunsanensis]
          Length = 423

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 204/425 (48%), Positives = 285/425 (67%), Gaps = 7/425 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L + I+R+G ++   +      
Sbjct: 2   EVIMTVLHAGGKFDDKSYAVSGGLHGVGVSVVNALSTALDVEIRRDGYVWRQRYDMTRP- 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G   ++TGT++TF     IF    F+Y+TL  R++E++FLN  + I++ D+R  
Sbjct: 61  GEL-VRGEEVSETGTQITFWADPGIFETTTFSYETLSRRMQEMAFLNKGLSITIRDERPD 119

Query: 217 EPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
              +     T  Y  G+  +V++++  K P   S I  +   + I+ ++AM+WN  Y  +
Sbjct: 120 FIDDGPVVNTYHYVNGLSDYVNHINAKKDPAHASIISFEEEGEGIAAEIAMQWNQSYTSS 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N +   +GGTH  G R+ALT  I  Y       ++ + ++ GDD REG T+++S+
Sbjct: 180 VHTFANTVNTAEGGTHEEGFRTALTALINRYARDQKLLREKEDNLTGDDIREGLTAIISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  WLE +P EAK IV K   A+  R AA
Sbjct: 240 KLTDPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWLERNPGEAKDIVSKASQAARARVAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR   +QAILP
Sbjct: 300 RQARDLTRRKTLLESTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPHHQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI +D FD +KLRYHKI++MTDADVDG+H
Sbjct: 360 IRGKILNVEKSRIDRILKNAEVQAIITALGTGIHED-FDASKLRYHKIVLMTDADVDGSH 418

Query: 513 IRTLL 517
           IRTLL
Sbjct: 419 IRTLL 423


>gi|328349729|emb|CBY89172.1| GyrB protein [Flavobacterium sp. R-41504]
          Length = 418

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 189/410 (46%), Positives = 267/410 (65%), Gaps = 7/410 (1%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202
            +YE  +  G    P+   G      GT VTF P   IF+   D++YDTL  R+RELS+L
Sbjct: 61  KVYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPSIFTQTIDYSYDTLSARMRELSYL 119

Query: 203 NSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR                 G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKRELDKEGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 360 AKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTIGTE 409


>gi|109287852|dbj|BAE96347.1| DNA gyrase subunit B [Photorhabdus sp. CbKj163]
 gi|109287854|dbj|BAE96348.1| DNA gyrase subunit B [Photorhabdus sp. OnIr40]
          Length = 391

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 231/394 (58%), Positives = 302/394 (76%), Gaps = 4/394 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL + G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGETE-QT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GG
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 391


>gi|307939294|gb|ADN95838.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 435

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 209/436 (47%), Positives = 291/436 (66%), Gaps = 21/436 (4%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT L AGGKF++ SYKVSGGLHGVGVS VNALS+ LK+ ++R G+ YE  +  GI    +
Sbjct: 1   MTVLXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---- 215
              G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R     
Sbjct: 61  KEVGLSE-EHGTEVQFLPDASIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLEG 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
              R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV 
Sbjct: 120 GVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVY 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+
Sbjct: 180 SYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+
Sbjct: 240 QEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLR
Sbjct: 300 AKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLRYHK 499
           GKILNVE+A+  ++L ++EI  +ITALG                G      +  KLRYHK
Sbjct: 360 GKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFTKLRYHK 419

Query: 500 IIIMTDADVDGAHIRT 515
           +IIMTDADVDG+HI T
Sbjct: 420 VIIMTDADVDGSHIPT 435


>gi|326335477|ref|ZP_08201664.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692243|gb|EGD34195.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 617

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 185/632 (29%), Positives = 283/632 (44%), Gaps = 59/632 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           N  N  Y  D+IQ L+  + V+ RP MYIG     S    G++ ++ E +DN+IDE + G
Sbjct: 7   NKPNMEYGEDNIQTLEWQEHVRMRPGMYIGKLGDGSSADDGIYILLKEAIDNSIDEFVMG 66

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I V +  D   TV D GRGIP            +V+ ++++ GGK++ +++K S G
Sbjct: 67  AGKQIEVRI-EDNKVTVRDFGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKKSVG 117

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD--NPLVVTGSAGNDTGTEVTFLP 177
           L+GVG   VNALSS+  +   R+G     +F  G+L   +PL    ++    GT VTF+P
Sbjct: 118 LNGVGTKAVNALSSYFYVASVRDGQRKSATFSLGVLQEESPLE---ASNEKRGTLVTFVP 174

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IF    F  + +   L+  ++LN  + I    ++         F + G+E  +   +
Sbjct: 175 DGTIFKNYKFRSEYVVRMLKNYTYLNPGLTIIYNGEK--------FFSENGLEDLLKEDN 226

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             +       I + G    I++         Y E    F N      GGTHL+  R A+ 
Sbjct: 227 NEEDFAYP-IIHLSGEDIEIALT---HSKSQYSEQYYSFVNGQNTTQGGTHLNAYREAIV 282

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV----- 352
             + +Y  K              D R+     +SIK+ +P F SQTK KL S+E+     
Sbjct: 283 ATLRNYYNK---------PYEASDIRKSIIGAISIKVMEPVFESQTKTKLGSTEMGEGMP 333

Query: 353 --RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDI 407
             R+ + +FV   L  +L + P  A+ I +K+L A   R      R       +K  L  
Sbjct: 334 SVRTYITNFVQKHLDDYLHKQPGIAEEIQRKILQAERERKELSDIRKLARDRTKKVSLHN 393

Query: 408 A---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
                    L D       +S LF+ EG+SA GS    R    QA+  LRGK LN     
Sbjct: 394 KKLRDCRIHLTDSKHEQALESTLFITEGNSASGSITTSRDANTQAVFSLRGKPLNSFGKT 453

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL          I  LRY+ I++ TDADVDG HIR LL+TFF + 
Sbjct: 454 KKIVYENEEFNLLQAAL-----DIEDSIENLRYNNIVLATDADVDGMHIRLLLITFFLQF 508

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P LI  G +YI++ PL+ +   K   Y   +E  E     + L           G IS 
Sbjct: 509 FPELIKEGHVYILQTPLFRVRNSKETIYCYTDE--ERIAAIEKLKNPEITRFKGLGEISP 566

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
           ++ ++FI   +++D ++ D   + +K      
Sbjct: 567 DEFKHFIGQDMRLDPVMIDKTMHIEKLLDFYM 598


>gi|86651911|gb|ABD14443.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 390

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 233/392 (59%), Positives = 306/392 (78%), Gaps = 3/392 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G   ++TGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGTRIRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV +
Sbjct: 60  WPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFMYEGGIQAFVEH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R 
Sbjct: 119 LNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 179 ALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKA 238

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 239 AVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKL 298

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 299 ADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 358

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            TLITA+G GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 ATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 390


>gi|257456581|ref|ZP_05621776.1| DNA topoisomerase 4 subunit B [Treponema vincentii ATCC 35580]
 gi|257446001|gb|EEV21049.1| DNA topoisomerase 4 subunit B [Treponema vincentii ATCC 35580]
          Length = 604

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 166/610 (27%), Positives = 268/610 (43%), Gaps = 47/610 (7%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
             ++YD   I+ L  L+ ++ R  MYIG     S    G++ ++ EVLDN+IDE + G  
Sbjct: 3   AKNTYDESKIKTLSSLEHIRLRTGMYIGRLGNGSNPDDGIYILLKEVLDNSIDEFIMGNG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           D I   +  D   TV D GRGIP            E + + ++ G K+N + ++ S GL+
Sbjct: 63  DRID-AMLQDNKVTVRDYGRGIPLGK-------VVECV-SVINTGAKYNDEVFQFSVGLN 113

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG   VNALS + ++   R+G   E  F  G+L +        G   GT V F+P  +I
Sbjct: 114 GVGTKAVNALSEYFRVVSVRDGKYAEAVFERGVLKHEKQGDAKKGIKNGTLVEFIPDREI 173

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    FN D ++ R+   ++LN+ + ++                + G+   ++       
Sbjct: 174 FGDYAFNLDFIEKRMWNYAYLNAGLTLTFNGAS--------YISENGLLDLLNAEIG--- 222

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
              +  +          ++ A    + Y E    F N     DGGTHLS  +  L + I 
Sbjct: 223 ---EETLYTIAHFKEAKLEFAFTHTNNYGETYFSFVNGQYTSDGGTHLSAFKEGLLKGIN 279

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+            +D REG  + +++K+  P F SQTK KL ++EVR+ + +   
Sbjct: 280 EYYRKN---------YKSEDVREGTCAAVAVKVQAPVFESQTKNKLGNTEVRTWIVNGTK 330

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER- 420
             +  WL+++   A+ + +K+L           +     +     IA    KL DC    
Sbjct: 331 AAVVEWLQKNAEAARKLEEKILANER-LRTELNSVKKEAKAAAKKIAMKIPKLKDCKFHL 389

Query: 421 ----DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
                  +S +F+ EGDSA GS    R    QA+  LRGK  N+   +   +  + E+  
Sbjct: 390 GDKQYGNESMIFITEGDSASGSMVSSRDVLTQALFSLRGKPENMHGKKRAAIYKNAELYN 449

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++ ALG         +  LRY+KIII TDAD DG HIR LLLTFF      L+ +G ++I
Sbjct: 450 MMMALGI-----ENSLESLRYNKIIIATDADNDGFHIRNLLLTFFLTYFEELVLSGRIFI 504

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           ++ PL+ +   K   Y   E+  +  +     + E+  F     +      +    D   
Sbjct: 505 LETPLFRVRTKKETCYCYSEKERDSEMKRLGTAAEVTRFKGLGEISPSEFGQFIGKDIRL 564

Query: 597 IDKLIKDFYP 606
           +   I+    
Sbjct: 565 LPVSIQTVKK 574


>gi|164608584|gb|ABY62583.1| DNA gyrase beta subunit [Aliivibrio logei]
          Length = 397

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 237/399 (59%), Positives = 306/399 (76%), Gaps = 4/399 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  ++L I R G +++  + +G+   PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEVFQQIYCHGVPQAPLAVIG-TTD 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     ++G
Sbjct: 60  TTGTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFMFEG 118

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           GI+AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DG
Sbjct: 119 GIKAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+
Sbjct: 179 GAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKD 238

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG L
Sbjct: 239 KLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGAL 298

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARF
Sbjct: 299 DIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 358

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           DKM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 DKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMT 397


>gi|295388286|gb|ADG03039.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 235/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFRPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|198042686|gb|ACH81168.1| GyrB [Pseudoalteromonas sp. UST050418-009]
          Length = 391

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 304/393 (77%), Gaps = 6/393 (1%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL +
Sbjct: 1   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAI 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G +   TGTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E +  
Sbjct: 61  IGDSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSD 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNN 279
              Y+GGI+AFV YL+R+K P+ +        R+   IS++++M+WND Y EN+ CFTNN
Sbjct: 119 HFKYEGGIQAFVEYLNRNKTPIHKGVFHFTHEREEDGISVEVSMQWNDAYQENIYCFTNN 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDP 337
           IPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP
Sbjct: 179 IPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDP 238

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  + +  + +L E+P +AKI+V K++DAS  R+AAR+AR+
Sbjct: 239 KFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDASRAREAARKARE 298

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 299 MTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 358

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           LNVE+ARFDKMLSSQE+ TLITALG GIG+D +
Sbjct: 359 LNVEKARFDKMLSSQEVATLITALGCGIGRDEY 391


>gi|333029561|ref|ZP_08457622.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Bacteroides coprosuis DSM 18011]
 gi|332740158|gb|EGJ70640.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Bacteroides coprosuis DSM 18011]
          Length = 620

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 186/621 (29%), Positives = 288/621 (46%), Gaps = 60/621 (9%)

Query: 1   MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNA 52
           MS+N++N +    Y  D I+ L  ++ ++ RP MYIG     S    G++ ++ EVLDN+
Sbjct: 1   MSENLENKTTSVAYTDDHIRHLSDMEHIRVRPGMYIGKLGDGSFAEDGIYVLLKEVLDNS 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE        I V +  + + +V D GRGIP            E + + L+ GGK++ K
Sbjct: 61  IDEFKMNAGKRIDVVVEDNLTASVRDFGRGIPQGK-------LIEAV-SVLNTGGKYDSK 112

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           ++K S GL+GVG+  VNALS   ++R  REG +    F  G L   L  T S+G  TGT 
Sbjct: 113 AFKKSVGLNGVGIKAVNALSKRFEVRSYREGKMRRAVFSQGNL--ELDETLSSGEKTGTY 170

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P   +F    F  + ++  LR  ++LN+ + IS    R           K G+E  
Sbjct: 171 IAFEPDESLFKGYSFRSEYIETMLRNYTYLNTGLVISYNKTRIES--------KNGLEDL 222

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           +S         +   I ++G      I++A      Y E    F N      GGTH S  
Sbjct: 223 LSDNMT--SEGLYPIIHLKGDD----IEVAFTHASQYGEEYYSFVNGQHTTQGGTHQSAF 276

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +  + R I  +  K+             D R G  + ++I + +P F SQTK KL S+ +
Sbjct: 277 KEHIARAIRDFYNKN---------HDFSDIRNGLVAAVAINVEEPLFESQTKIKLGSTHM 327

Query: 353 RS-------VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA------ARRARDLT 399
                     V  F+   +  +L  +   A++++KK+ ++   R A        R R   
Sbjct: 328 GPKGPTVNKFVGDFIKTEVDNYLHRNAKVAEVLLKKIQESEKERKAIAGVTKIARERAKK 387

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
                  +      L D    D + S +F+ EGDSA GS  + R    QA+  LRGK LN
Sbjct: 388 VSLHNKKLRDCRIHLNDVKGEDKEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLN 447

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
                   +  ++E   L  AL    G     I+ LRY+K+I+ TDADVDG HIR LL+T
Sbjct: 448 SFGLTKKVVYENEEFNLLQAALNIEDG-----IDGLRYNKVIVATDADVDGMHIRLLLIT 502

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF +  P LI  G +YI++ PL+ +   K  +Y   EE     +     + EI  F    
Sbjct: 503 FFLQFFPDLIKKGHVYILQTPLFRVRNKKETRYCYTEEERVSAINELGPNPEITRF-KGL 561

Query: 580 GVISKNDLRNFIDDALKIDKL 600
           G IS ++ ++FI   ++++++
Sbjct: 562 GEISPSEFKHFIGKDMRLEQV 582


>gi|295388370|gb|ADG03080.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 235/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEDFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|328349727|emb|CBY89171.1| GyrB protein [Flavobacterium sp. R-38503]
          Length = 414

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 189/410 (46%), Positives = 267/410 (65%), Gaps = 7/410 (1%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202
            +YE  +  G    P+   G      GT VTF P   IF+   D++YDTL  R+RELS+L
Sbjct: 61  KVYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPSIFTQTIDYSYDTLSARMRELSYL 119

Query: 203 NSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR                 G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKRELDKEGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 360 AKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTIGTE 409


>gi|295388350|gb|ADG03070.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SY+VSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYRVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|83853991|gb|ABC47933.1| gyrase B subunit [Vibrio cholerae O1 biovar El Tor]
          Length = 390

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 234/392 (59%), Positives = 304/392 (77%), Gaps = 3/392 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV
Sbjct: 60  RFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 119 THLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 179 RGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 239 KSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 299 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           E+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 EVATLITALGCGIGRDEYNPDKLRYHNIIIMT 390


>gi|171912370|ref|ZP_02927840.1| DNA topoisomerase IV subunit B [Verrucomicrobium spinosum DSM 4136]
          Length = 638

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 173/665 (26%), Positives = 287/665 (43%), Gaps = 58/665 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           + N  Y  DSI+ L   + ++ RP MYIG     +    G++ ++ EV+DN IDE + GY
Sbjct: 1   MANHGYTEDSIRSLDWREHIRLRPGMYIGKLGDGTAPEDGIYVLLKEVIDNTIDEHVMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              + +T+  +  CT+ D GRG+P     E    AA++     + G K++ + +K S GL
Sbjct: 61  GKEVEITI-EENVCTIRDYGRGVPLGKLME---CAAQI-----NTGAKYDSEVFKRSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG+  VNALS    ++  REG    + F  G++   +    +  +  GT++TF P   
Sbjct: 112 NGVGIKAVNALSDRFDIQAYREGKTRAIEFSQGLVVKEMKNPVATTDRDGTKITFHPDPT 171

Query: 181 IFSVQDFNY-DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            F+       D ++  LR  ++LN  + ++L  ++           K G+   ++     
Sbjct: 172 SFAGDYAFRLDFIREMLRFYAWLNPGLTLTLNGEK--------FRSKDGLIDLLNAKLTE 223

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            +P                +++A     GY E    F N      GGTHL+  R AL  +
Sbjct: 224 -EPQYPIIYLASKE-----VEVAFTHGVGYGEECYSFVNGQHTTQGGTHLAAFREALVAE 277

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS----- 354
              + +K              D R    + +S+K+ +P F SQTK KL S+ +       
Sbjct: 278 AREFFKKQ---------FDPSDVRGSLVAAVSVKVQEPVFESQTKTKLGSTTMEPNGRSL 328

Query: 355 ------VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDI 407
                  V S +++ L    +      + I     +   +    + AR+  R+ K     
Sbjct: 329 RTTIVNFVTSQLDNYLHKHGDVAKAMLEKIQANEKERKEISGIQKIARESARKAKVHNKK 388

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                   D    D +KS LF+ EGDSA GS  + R    QA+  LRGK LN        
Sbjct: 389 LRDCRVHLDTKNPDREKSTLFITEGDSASGSITKSRDVNFQAVFSLRGKPLNCFGLTRKV 448

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
              ++E   L  AL         D+ +LRY  +++ TDADVDG HIR L++TFF +  P 
Sbjct: 449 CYENEEFNLLQNALNI-----EEDLEELRYQNVVMATDADVDGMHIRLLMITFFLQFYPE 503

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G LYI++ PL+ +   K   Y   +E     +     + EI  F    G IS ++ 
Sbjct: 504 LIRRGHLYILQTPLFRVRNKKETFYCYSDEERFKAIAKCGKAAEITRF-KGLGEISPDEF 562

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
           ++FI   ++++ ++   + +  +         G    +  + I  +L  +    L   A 
Sbjct: 563 KHFIGPKMRLEPVLMPEHKSIKELLTF---YMGKNTPDRQEYIVQNLRVEHDIELEDKAR 619

Query: 648 KSEKS 652
             E+ 
Sbjct: 620 DEEER 624



 Score = 43.8 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 96/312 (30%), Gaps = 30/312 (9%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ------YVKDEE 557
           T  + +G  +RT ++ F   Q+ + +H     + K  L  I   +  +           E
Sbjct: 319 TTMEPNGRSLRTTIVNFVTSQLDNYLHK-HGDVAKAMLEKIQANEKERKEISGIQKIARE 377

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
           S     ++     +  +  D+K    +       +       + K    N    F  +  
Sbjct: 378 SARKAKVHNKKLRDCRVHLDTKNPDREKSTLFITEGDSASGSITKSRDVNFQAVFSLRGK 437

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
               F             + L N LN   +  E  +   +  +D  V  +        +L
Sbjct: 438 PLNCFGLTRKVCYENEEFNLLQNALNIEEDLEELRYQNVVMATDADVDGM-----HIRLL 492

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737
             +    F  +  R     +      +  +    +             I   G K   + 
Sbjct: 493 MITFFLQFYPELIR--RGHLYILQTPLFRVRNKKETFYCYSDEERFKAIAKCG-KAAEIT 549

Query: 738 RYKGLGEMNASQ------LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           R+KGLGE++  +             P  R L  V + +     +L +  MG     R+E+
Sbjct: 550 RFKGLGEISPDEFKHFIG-------PKMR-LEPVLMPEHKSIKELLTFYMGKNTPDRQEY 601

Query: 792 IQENSLPSALDI 803
           I +N L    DI
Sbjct: 602 IVQN-LRVEHDI 612


>gi|324039436|dbj|BAJ78471.1| DNA gyrase subunit B [Alcanivorax sp. TE-9]
          Length = 392

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 235/395 (59%), Positives = 303/395 (76%), Gaps = 3/395 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+ + PL V G     +
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSETLKLTIRRHGKVHEQVYHDGVPEKPLEVVG-TTESS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + F PSS  F+   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+
Sbjct: 60  GTAIRFRPSSGTFNNIQFHYDILAKRLRELSFLNSGVRIHLVDERSGDE--DVFEYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFV+YL+++K  L Q         D IS+++AM+WND Y EN+ C+TNNIPQ+DGGTHL
Sbjct: 118 SAFVTYLNQNKNSLNQVFHFQVDREDGISVEVAMQWNDSYQENIFCYTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y+EK    K++K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRTLNNYMEKEGFLKREKANPSGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  + +    +L EHP+E+K IV+K++DA+  RDAAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKSAVEQTMTERFQDFLLEHPVESKNIVQKIIDAARARDAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           SSQE+ TLITALG GIG+D +D +KLRYH+IIIMT
Sbjct: 358 SSQEVATLITALGCGIGRDEYDADKLRYHRIIIMT 392


>gi|83854013|gb|ABC47944.1| gyrase B subunit [Aeromonas hydrophila]
          Length = 389

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 239/392 (60%), Positives = 300/392 (76%), Gaps = 3/392 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LT RKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTHRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           LITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 358 LITALGCGIGRDEYNPDKLRYHNIIIMTDADV 389


>gi|295388344|gb|ADG03067.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DRT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+ GGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRGGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|257168206|gb|ACV40236.1| DNA gyrase subunit B [Yersinia aldovae]
          Length = 279

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 151/281 (53%), Positives = 198/281 (70%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL + G     TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L D 
Sbjct: 121 PQAPLKMVGETE-LTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDN 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +       Y+GGI AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RNDKE--DHFHYEGGIRAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLFGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|68165244|gb|AAY87582.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 201/359 (55%), Positives = 268/359 (74%), Gaps = 3/359 (0%)

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 60

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +F
Sbjct: 61  VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGEIE-RTGTTVRFWPSAQTFTNIEF 119

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ +  
Sbjct: 120 HYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKV 178

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K
Sbjct: 179 FHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDK 238

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ 
Sbjct: 239 EGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD 298

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  S
Sbjct: 299 FLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 357


>gi|328349735|emb|CBY89175.1| GyrB protein [Flavobacterium sp. R-38313]
          Length = 414

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 189/410 (46%), Positives = 267/410 (65%), Gaps = 7/410 (1%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202
            +YE  +  G    P+   G      GT VTF P   IF+   D++YDTL  R+RELS+L
Sbjct: 61  KVYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDQSIFTQTIDYSYDTLSARMRELSYL 119

Query: 203 NSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR                 G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKRELDKEGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 360 AKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTIGTE 409


>gi|313205726|ref|YP_004044903.1| DNA topoisomerase type iia subunit b region 2 domain protein
           [Riemerella anatipestifer DSM 15868]
 gi|312445042|gb|ADQ81397.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Riemerella anatipestifer DSM 15868]
          Length = 619

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 172/618 (27%), Positives = 292/618 (47%), Gaps = 55/618 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS+ +Q  +Y  D+I+ L   + ++ RP MYIG     S    G++ ++ E+LDN+IDE 
Sbjct: 1   MSEALQQVNYSEDNIRTLDWQEHIRLRPGMYIGKLGDGSSADDGIYILLKEILDNSIDEF 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
                  I + L+ D    + D GRGIP            + + ++++ GGK++ K++K 
Sbjct: 61  RMKAGKRIEIKLD-DRKVQIRDYGRGIPLGK-------VVDAV-SKMNTGGKYDSKAFKK 111

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS + +++  R+       F  G +         + +  GTE+TF+
Sbjct: 112 SVGLNGVGTKAVNALSEYFRVKSVRDNKTKVAEFCRGNITENFPE-EDSSDRNGTEITFI 170

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P ++IF    F  + ++  LR  ++LN  ++I    +          F + G++  +   
Sbjct: 171 PDAEIFLNYKFRKEYIERMLRNYAYLNPGLKIIFNGET--------YFSENGLKDLLEEE 222

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
              +       + ++G    ++I      +    E    F N      GGTHL+  R A 
Sbjct: 223 MESQTLY--PIVHLKGDDIEVAIT---HSDKSQTETYFSFVNGQNTTQGGTHLNAFREAY 277

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + I  +  K+F +          D R+   + +SI + +P F SQTK KL S+++    
Sbjct: 278 VKTIREFFNKNFDAS---------DIRKSIIAAISINVEEPVFESQTKTKLGSNDIGPQG 328

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA---ARRARDLTRRKGVLD 406
              R+ V  F+   L  +L ++P  A+ + KK+L +   R      ++      +K  L 
Sbjct: 329 PTVRTFVIDFLKTKLDNFLHKNPEVAEAVHKKILVSERERKELSGIQKLARERAKKVSLH 388

Query: 407 IASLPGKLADCSERDPKK---SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              L       +E+   +   +++F+ EGDSA GS  + R  E QA+  L+GK LN    
Sbjct: 389 NKKLRDCRQHYNEQKADRKSETQIFITEGDSASGSITKSRDVETQAVFSLKGKPLNCYGL 448

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL          +  LRY+++II TDADVDG HIR L++TFF +
Sbjct: 449 TKKVVYENEEFNLLQAALNI-----EESLEDLRYNQVIIATDADVDGMHIRLLMITFFLQ 503

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI NG LYI++ PL+ +   K  +Y   EE     L     + EI  F    G IS
Sbjct: 504 FFPDLIKNGHLYILQTPLFRVRNKKETRYCYTEEERIRALNELGKNPEITRF-KGLGEIS 562

Query: 584 KNDLRNFIDDALKIDKLI 601
            ++ ++FI   ++++ ++
Sbjct: 563 PDEFKHFIGKDIRLEPVV 580


>gi|148762369|dbj|BAF63886.1| DNA topoisomerase IV subunit B [Halobacillus litoralis]
          Length = 407

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 184/406 (45%), Positives = 256/406 (63%), Gaps = 9/406 (2%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           GLHH+++E++DNAIDE+L G+ + +T TL+ DGS +V D  RG+PT +H + G    EVI
Sbjct: 6   GLHHLVHEIVDNAIDEALSGFGEKMTATLHKDGSVSVQDEARGMPTGMH-KTGKPTPEVI 64

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNP 158
           +T LHAGGKF Q  YK SGGLHGVG SVVNALS WL++ I R+G  +   F N G+    
Sbjct: 65  LTVLHAGGKFGQGGYKSSGGLHGVGASVVNALSEWLEVHICRDGEKFYQRFENGGVPVTS 124

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L   G A   TGT + F P   IFS+  FN++TL  RLRE +FL    +I L+D+R  E 
Sbjct: 125 LENKG-ATRKTGTTIRFKPDPSIFSMTKFNFETLSERLREAAFLLKGFRIILVDER-KET 182

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y  G+ +FV YL+  K  L    +  +GS   I  D A ++NDG+ EN+L F N
Sbjct: 183 VREEYQYDDGLVSFVEYLNEEKDTLHS-VVSFEGSHSGIEADFAFQFNDGFAENILSFVN 241

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP- 337
           N+  KDGGTH SG ++A+TR    Y  ++   K   +++ G+D REGFT+V+S+++P+  
Sbjct: 242 NVRTKDGGTHESGAKTAITRVFNDYARRAQLLKDKDKNLEGNDIREGFTAVISVRIPEEL 301

Query: 338 -RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
            +F  QTK KL +SE RS V+  V + LS +LEE+P  A +++KK + A   R+AAR+AR
Sbjct: 302 LQFEGQTKSKLGTSEARSAVDGIVAEQLSYFLEENPDVASMLIKKAIKAKEAREAARKAR 361

Query: 397 D--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           +   + +K       L GKL     ++ KK+EL+LVEGDSAGGSAK
Sbjct: 362 EDARSGKKKKRKDTLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAK 407


>gi|4589347|gb|AAD26461.1|AF136389_1 gyrase B subunit [Bacillus cereus]
          Length = 406

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 203/409 (49%), Positives = 290/409 (70%), Gaps = 4/409 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +    +VSGG HGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + T
Sbjct: 1   DGGGNEVSGGWHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQT 59

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GG
Sbjct: 60  GTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH
Sbjct: 119 IKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL 
Sbjct: 179 EVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLG 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++
Sbjct: 239 NSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVS 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+
Sbjct: 299 SLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LS+ E+ T+ITA+GT IG D FDI K RYHK+IIMTDADVDG+HIRTLL
Sbjct: 359 LSNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGSHIRTLL 406


>gi|227536159|ref|ZP_03966208.1| possible DNA topoisomerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244056|gb|EEI94071.1| possible DNA topoisomerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 617

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 170/610 (27%), Positives = 279/610 (45%), Gaps = 55/610 (9%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           ++Y+ DSI+ L   + ++ RP MYIG     S    G++ ++ EV+DN+IDE + G   I
Sbjct: 2   TTYNEDSIRSLDWKEHIRLRPGMYIGKLGDGSAYDDGIYVLLKEVVDNSIDEFVMGAGKI 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +++N +   +V D GRGIP         S  +V+ ++++ GGK++ K+++ S GL+GV
Sbjct: 62  IDISVN-ENKVSVRDYGRGIPIG-------SVVDVV-SKINTGGKYDSKAFQKSVGLNGV 112

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G   VNALS+   ++  R+G      F  G L              GT V+F P   IF 
Sbjct: 113 GTKAVNALSTQFTVQSYRQGETRIAQFSKGELVTD--EKKETTQRNGTAVSFYPDDSIFR 170

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +  + +++ +    FLNS + I+   ++           + G++  +      +   
Sbjct: 171 NYKYRMEFVENMIWNYVFLNSGLVINFNGQK--------FISENGLKDLLERNIDTESMR 222

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I ++G      I++A+     Y E    F N      GGTH +  R AL + I  +
Sbjct: 223 YP-IIHLKGED----IEIALTHGQQYGEEYYSFVNGQHTTQGGTHQAAFREALVKTIREF 277

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SEVRSVV 356
            +K F +          D R      ++IK+ +P F SQTK KL S         VR+ +
Sbjct: 278 YKKDFDAA---------DVRSSIIGAIAIKVQEPVFESQTKTKLGSQSIGPDGPTVRTFI 328

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDI--ASLP 411
             F+   L  +L  +   A  ++K++L +   R      +   +   +K  L        
Sbjct: 329 NDFLKKALDDYLHRNSDTADALLKRILQSERERKDIAGIKKLANERAKKASLHNRKLRDC 388

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
                      +++ LF+ EGDSA GS  + R  + QA+  L+GK LN        +  +
Sbjct: 389 KVHFSDKNERNQETTLFITEGDSASGSITKSRDVQTQAVFSLKGKPLNSYGMSKKIVYEN 448

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +E   L  AL    G     ++ LRY+ I+I TDADVDG HIR LLLTFF +  P L+  
Sbjct: 449 EEFNLLQHALNIEDG-----LDGLRYNNIVIATDADVDGMHIRLLLLTFFLQFFPDLVKA 503

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G + I++ PL+ +   K   Y   +E  +  +       EI  F    G IS ++   FI
Sbjct: 504 GHVAILQTPLFRVRNKKETIYCYSDEERQRAIAKLGAKPEITRF-KGLGEISPSEFGLFI 562

Query: 592 DDALKIDKLI 601
              +++D +I
Sbjct: 563 GKDIRLDPVI 572


>gi|227553420|ref|ZP_03983469.1| possible DNA topoisomerase IV subunit B [Enterococcus faecalis
           HH22]
 gi|227177431|gb|EEI58403.1| possible DNA topoisomerase IV subunit B [Enterococcus faecalis
           HH22]
          Length = 299

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 148/303 (48%), Positives = 198/303 (65%), Gaps = 5/303 (1%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+  I N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY
Sbjct: 1   MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VT+  D S  V+D+GRG+PT +H   GI   EVI T LHAGGKF Q  YK SGGL
Sbjct: 59  GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+G  Y   F + G     L   G      GT VTFLP  
Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS  +F+Y+ L  RLRE +FL   V+I+L D+R  EP+E    Y+ GI+ FV+YL+  
Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K  L    +   G+++ I ++LA ++NDGY ENVL F NN+  KDGGTH  G+++++T+ 
Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296

Query: 300 ITS 302
              
Sbjct: 297 YNE 299


>gi|295388284|gb|ADG03038.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DRFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNI Q+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNISQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|51921648|gb|AAU13950.1| gyrase B subunit [Vibrio vulnificus]
          Length = 390

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 237/392 (60%), Positives = 307/392 (78%), Gaps = 3/392 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G+   PL V G     TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVQLTIYRGGHIHTQTYHHGVPQAPLTVVGDTE-KTGTTVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L
Sbjct: 60  PSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLQDER-EEDKKDHFMYEGGIQAFVTHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        R++ IS+++AM+WNDG+ EN+  FTNNIPQ+DGGTHL+G R+A
Sbjct: 119 NRNKTPIHEKVFHFNTEREDGISVEVAMQWNDGFQENIYWFTNNIPQRDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 LTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VESF+ D L+ +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 239 VESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 299 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 358

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           TLITALG GIG+D ++ +KLRYH IIIMTDAD
Sbjct: 359 TLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 390


>gi|49065929|gb|AAT49055.1| gyrase B [Capnocytophaga canimorsus]
 gi|49065933|gb|AAT49057.1| gyrase B [Capnocytophaga canimorsus]
          Length = 423

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 200/424 (47%), Positives = 280/424 (66%), Gaps = 16/424 (3%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVS VNALSS L   + R+G I++  +  G +  P+   G      GT V
Sbjct: 1   YKVSGGLHGVGVSCVNALSSHLTAVVYRDGKIWQQEYERGKVLYPVKQVGDT-QKRGTTV 59

Query: 174 TFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGG 228
           TF P   IF    ++ YDTL  R+REL+FLN  + I+L D    + + E +  T + + G
Sbjct: 60  TFQPDDLIFQQTLEYKYDTLATRMRELAFLNRGITITLTDKREREENGEFKSETFYSENG 119

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ F+ YLD ++  ++ + I ++G ++ I +++AM +ND Y EN+  + NNI   +GGTH
Sbjct: 120 LKEFIRYLDGNRPAIISNVIAMEGEKNEIPVEVAMVYNDSYSENLHSYVNNINTHEGGTH 179

Query: 289 LSGLRSALTRQITSYVEKSFGSKK------DKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           L G R  LTR +  Y + S   +K      +   + G+D REG T+++S+K+ +P+F  Q
Sbjct: 180 LEGFRRGLTRTLKKYADSSGLLEKMSKDKKNPVQISGEDFREGLTAIVSVKVAEPQFEGQ 239

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +SEV +VV   V++ L A+LEEHP +AK+IV+KV+ A+  R AAR+AR+L +RK
Sbjct: 240 TKTKLGNSEVLAVVSQAVSEMLEAYLEEHPNDAKVIVEKVIIAAQARHAARKARELVQRK 299

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
            V+    LPGKL+DCSE++P+  E+FLVEGDSAGG+AKQGR R  QAILPL+GKILNVE+
Sbjct: 300 TVMSGGGLPGKLSDCSEQNPELCEIFLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEK 359

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLL 518
           A   K+  S+EI  + TALG  IG +         KLRYHK++IM DADVDG+HI TL+L
Sbjct: 360 AMHHKVFDSEEIKNIFTALGVTIGTEDDAKALNLEKLRYHKVVIMCDADVDGSHITTLIL 419

Query: 519 TFFF 522
           TFFF
Sbjct: 420 TFFF 423


>gi|307939328|gb|ADN95855.1| DNA gyrase B [Hymenobacter elongatus]
          Length = 422

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 201/423 (47%), Positives = 284/423 (67%), Gaps = 15/423 (3%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT L AGGKF++ SYKVSGGLHGVGVS VNALS  LK+ ++R G++Y+  +  G+   
Sbjct: 1   LIMTVLXAGGKFDKDSYKVSGGLHGVGVSCVNALSQDLKVTVRRNGHVYQQEYKIGVPQY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----K 213
           P+   G    + GT+V FLP S IF+   + YDT+ +RLRELS+LN  ++I L D     
Sbjct: 61  PVKEIGDTE-EHGTQVEFLPDSSIFTESVYKYDTIANRLRELSYLNKGIRIMLTDLREKN 119

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
                     + +GG+  FV YLD  ++ LM +PI +   +    +++A+++ND Y E++
Sbjct: 120 DDGTFLGEEFYSQGGLSEFVQYLDSGRQVLMPNPIHVVSEKGGTPVEVALQYNDSYQEHI 179

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             + NNI   +GGTH++G RSALTR + +Y +KS   +K K  + GDD REG T+V+S+K
Sbjct: 180 FSYVNNINTIEGGTHVAGFRSALTRTLKAYADKSGMLEKAKVEIQGDDFREGLTAVISVK 239

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL +S+V   V + V + L+ +LEE+P EA+II++KV+ A+  R AAR
Sbjct: 240 VQEPQFEGQTKTKLGNSDVSGAVNTVVGEILNQYLEENPKEARIIIEKVILAARARIAAR 299

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++ +RK VL   SLPGKLADCSE DP   EL+LVEGDSAGG+AKQGR+R  QAILPL
Sbjct: 300 KAREMVQRKTVLGSNSLPGKLADCSESDPAICELYLVEGDSAGGTAKQGRNRAFQAILPL 359

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----------NKLRYHKIIIM 503
           RGKILNVE+A+  ++  ++EI  +ITALG    + + +           +KLRYHK+IIM
Sbjct: 360 RGKILNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSTTRSLNLDKLRYHKVIIM 419

Query: 504 TDA 506
           TDA
Sbjct: 420 TDA 422


>gi|295134568|ref|YP_003585244.1| DNA topoisomerase IV subunit B [Zunongwangia profunda SM-A87]
 gi|294982583|gb|ADF53048.1| DNA topoisomerase IV subunit B [Zunongwangia profunda SM-A87]
          Length = 620

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 178/664 (26%), Positives = 298/664 (44%), Gaps = 64/664 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           MS   +   Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN IDE 
Sbjct: 1   MSQETK---YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNCIDEF 57

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           + G    I V++  +    V D GRGIP            +V+ ++++ GGK++ +++K 
Sbjct: 58  VMGSGKTIEVSV-QNQRVIVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKK 108

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALSS+ ++   R+G  +   F  G L +            GT+VTF+
Sbjct: 109 SVGLNGVGTKAVNALSSYFRVESNRDGKSHAAEFEQGNLKDE-ESLEETSRRRGTKVTFV 167

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P   IF    F  + ++  ++   +LN  + I    ++         + + G++  ++  
Sbjct: 168 PDELIFKNFKFRNEYIEKMIKNYVYLNPGLSIIFNGEK--------FYSENGLKDLLND- 218

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
             +K+  +   I ++G    I++         Y E    F N      GGTHL+  R A+
Sbjct: 219 TLNKEDRLYPIIHLRGDDIEIAVT---HSKAQYSEEYHSFVNGQNTSQGGTHLAAFREAI 275

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + +  +  K++ +          D R+   + +SIK+ +P F SQTK KL S+++    
Sbjct: 276 VKTVREFYGKNYDAS---------DIRKSIVAAISIKVMEPVFESQTKTKLGSTDMGGDF 326

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLD 406
              R+ +  FV      +L ++   A+ + +K+L A   R      R       +K  L 
Sbjct: 327 PTVRTYINDFVKRNFDNYLHKNQETAEKLQRKILQAERERKDLSGIRKLAKERAKKASLH 386

Query: 407 IA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                     L D  +    ++ LF+ EGDSA GS  + R    QA+  L+GK LN    
Sbjct: 387 NKKLRDCRIHLGDNKKERYLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNSYGL 446

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR LL+TFF +
Sbjct: 447 SKKIVYENEEFNLLQAALNI-----EESLEDLRYNNIVIATDADVDGMHIRLLLITFFLQ 501

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI    LYI++ PL+ +   K   Y   E   +  +       EI  F    G IS
Sbjct: 502 FFPELIKENHLYILQTPLFRVRNKKETIYCYSEYERKQAVQKLKGKVEITRF-KGLGEIS 560

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            ++ + FI D +++D ++ D   + ++           +  ++  +    +   L   L+
Sbjct: 561 PDEFKYFIGDDIRLDPVMLDKDKSIEEML-------SFYMGKNTPDRQEFIIDNLKVELD 613

Query: 644 FIAE 647
            I E
Sbjct: 614 LIEE 617



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 28/141 (19%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +L  +    F  +  +   N +      +  +    + I           +  +  K
Sbjct: 490 HIRLLLITFFLQFFPELIKE--NHLYILQTPLFRVRNKKETIYCYSEYERKQAVQKL--K 545

Query: 733 G-ISMQRYKGLGEMNASQ----------LWETTLNPDTRSLLRVKITDASQADDLFSRLM 781
           G + + R+KGLGE++  +          L     +P       V +      +++ S  M
Sbjct: 546 GKVEITRFKGLGEISPDEFKYFIGDDIRL-----DP-------VMLDKDKSIEEMLSFYM 593

Query: 782 GDEVEPRREFIQENSLPSALD 802
           G     R+EFI +N L   LD
Sbjct: 594 GKNTPDRQEFIIDN-LKVELD 613


>gi|328349711|emb|CBY89163.1| GyrB protein [Flavobacterium sp. R-36669]
          Length = 418

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 192/419 (45%), Positives = 271/419 (64%), Gaps = 11/419 (2%)

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFIN 152
           SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS  L+  +   +G +YE  +  
Sbjct: 1   SALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSSDGKVYEQEYER 60

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLI 211
           G    P+   G      GT VTF P   IF+   +F YDTL  R+RELSFLN  + I+  
Sbjct: 61  GKALYPVKQIGETT-KRGTIVTFYPDPIIFTQTVEFAYDTLSARMRELSFLNKGITITFT 119

Query: 212 DKRSPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           DKR  +              G++ +V YLD +++P++   I +   +  + +++A+ +N 
Sbjct: 120 DKREVDKDGNFVSEIFHSDEGLKEYVRYLDANREPIISHVISMNSEKGEVPVEVALIYNT 179

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T
Sbjct: 180 SYTENIFAYVNNINTHEGGTHLQGFRTGLTRALKKYADSSGMLDKLKFEIAGDDFREGLT 239

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++S+K+ +P+F  QTK KL + EV + V   V++ +  +LEE+P +A+IIV+KV+ A+ 
Sbjct: 240 AIISVKVSEPQFEGQTKTKLGNREVVAPVSQAVSEMIENYLEENPNDARIIVQKVILAAQ 299

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  
Sbjct: 300 ARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEVYLVEGDSAGGTAKQGRDRAF 359

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIII 502
           QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +      +I+KLRYHK+II
Sbjct: 360 QAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALNISKLRYHKVII 418


>gi|295388319|gb|ADG03055.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNN PQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNTPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|27544682|dbj|BAC55036.1| DNA gyrase B subunit [Fluoribacter dumoffii]
          Length = 389

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 237/392 (60%), Positives = 304/392 (77%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E  + NG+ + P+V TG A   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLTVRRHGKIHEQHYRNGVPEAPMVETGDAT-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ FS  +F+YD L  RLRELS+LNS V I L D+RS   R+ T  Y+GGI+
Sbjct: 60  TQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERS--QRQDTFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K  ++ +   +   +DNI ++L+M+WND Y E + CFTNNIPQ+DGGTH++
Sbjct: 118 AFVEHLNKNKNVIIPTVFSMSAEKDNIVVELSMQWNDSYQETLYCFTNNIPQRDGGTHMA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+SVVES V +  + +L E+P  AK IV K++DA+  R+AARRAR++TRRKG LD+A L
Sbjct: 238 EVKSVVESSVAEKFNDFLLENPSSAKAIVAKIIDAARAREAARRAREMTRRKGALDVAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG D +D +K+RYH+III
Sbjct: 358 SQEVATLITALGCGIGPDEYDPDKVRYHRIII 389


>gi|295388312|gb|ADG03052.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            SSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 SSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|324039456|dbj|BAJ78481.1| DNA gyrase subunit B [Alcanivorax sp. Wf-3]
          Length = 412

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 239/396 (60%), Positives = 306/396 (77%), Gaps = 4/396 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+  NPL V G   + +
Sbjct: 20  DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYHHGVPANPLEVVG-TTDSS 78

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+
Sbjct: 79  GTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGL 136

Query: 230 EAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFVSYL+ +K  L Q      +   D I++++AM+WND Y E++ CFTNNIPQ+DGGTH
Sbjct: 137 SAFVSYLNTNKTALNQVFHFNYEREEDGIAVEVAMQWNDSYQESIFCFTNNIPQRDGGTH 196

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + SY++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 197 LAGFRAALTRTLNSYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 256

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 257 SSEVKSAVEQTMGDLFQDYLLENPTEARSIVQKIIDAARARDAARKAREMTRRKGALDIA 316

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 317 GLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 376

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+GTLITALG GIG+D ++I+KLRYH+IIIMT
Sbjct: 377 LSSQEVGTLITALGCGIGRDEYNIDKLRYHRIIIMT 412


>gi|317474758|ref|ZP_07934032.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909439|gb|EFV31119.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 640

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 176/653 (26%), Positives = 293/653 (44%), Gaps = 60/653 (9%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
               Y+ D+I+ L  ++ ++ R  MYIG     S    G++ ++ EV+DN+IDE   G  
Sbjct: 28  NEVEYNEDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG 87

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V +  +   +V D GRGIP            E + ++L+ GGK++ K++K S GL+
Sbjct: 88  KRIEVNIEDNLRVSVRDYGRGIPQGK-------LVEAV-SKLNTGGKYDSKAFKKSVGLN 139

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+  VNALSS  ++R  R+G +  + F  G+L +   VT  +  + GT + F P + +
Sbjct: 140 GVGIKAVNALSSRFEVRSYRDGKVRTVIFEKGVLQSD--VTEDSTEENGTYIFFEPDNTL 197

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F    ++  LR  ++LN+ +      +R             G+E  +        
Sbjct: 198 FLNYSFQNQFVETLLRNYTYLNTGLTFIYNGQRIISRH--------GLEDLLKDNMT--S 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
             +   + ++G      I++A    + Y E    F N      GGTH + L+  + R I 
Sbjct: 248 EGLYDIVHLKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTALKEHIARTIK 303

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SEVRS 354
            +  K+             D R G  + ++I + +P F SQTK KL S         V  
Sbjct: 304 EFYNKNQDYA---------DIRNGLVAAIAIDVEEPMFESQTKTKLGSNNMWPDGPTVNK 354

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGVLD 406
            V  F+   +  +L ++PL  +++++K+ D+   R         A  RA+        L 
Sbjct: 355 YVGDFIKTEVDNFLHKNPLVTEVMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRKLR 414

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
                       E++     +F+ EGDSA GS  + R    QA+  LRGK LN       
Sbjct: 415 DCRFHLSDGKGKEQETDSC-IFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKK 473

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR L++TFF +  P
Sbjct: 474 VVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLIITFFLQFFP 528

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G +YI++ PL+ +   K   Y   E+     +     + EI  F    G IS ++
Sbjct: 529 DLIKKGHVYILQTPLFRVRNKKKTNYCYTEDERIKAIEELGPNPEITRF-KGLGEISPDE 587

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
            ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 588 FKHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 639


>gi|284484537|gb|ADB90399.1| DNA gyrase subunit B [Shewanella sp. udc329]
          Length = 395

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 229/398 (57%), Positives = 302/398 (75%), Gaps = 4/398 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  LKL I+R G  YE  + +G    P+   G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLKLTIRRNGKTYEQYYRHGNPVEPIKEIG-TSEHT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +F+Y+ L  R+RELSFLNS V I L D+R  +       Y+GGI
Sbjct: 60  GTEIRFWPSKETFTDVEFHYEILAKRVRELSFLNSGVGIRLRDERDHKD--DFFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFV YL+ +K  + +        RD+ I++++AM+WNDG+ EN+LCFTNNIPQ+DGGTH
Sbjct: 118 HAFVEYLNHNKTAVNKEIFHFSQERDDGITVEVAMQWNDGFQENILCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + +Y+E    +KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAALTRNLNNYMEAEGYNKKNKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE  + + L+ +L E+P EA+++V K++DA+  R+AAR+AR++TRRKG LD+ 
Sbjct: 238 SSEVKTAVEQTMAEKLNDYLLENPNEARLVVSKIIDAARAREAARKAREMTRRKGALDLG 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           LSSQE+ +LITALG GIG+D ++ +K RYH IIIMTDA
Sbjct: 358 LSSQEVASLITALGCGIGRDEYNPDKTRYHNIIIMTDA 395


>gi|85541243|gb|ABC70862.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 391

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 235/394 (59%), Positives = 302/394 (76%), Gaps = 4/394 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GG
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV YL+++K P+  +       +D I I++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A
Sbjct: 238 SSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+N AILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLITALG GIG+D ++ +KLRYH+III
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLRYHRIII 391


>gi|149003442|ref|ZP_01828331.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS69]
 gi|147758625|gb|EDK65623.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS69]
          Length = 524

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 210/500 (42%), Positives = 317/500 (63%), Gaps = 5/500 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F+P   IF 
Sbjct: 2   GSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIPDPKIFT 60

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI ++V Y++ +K  
Sbjct: 61  ETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYINENKDV 120

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH  G R+ALTR I  
Sbjct: 121 IFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVIND 180

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++
Sbjct: 181 YARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 240

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLADCS  +P
Sbjct: 241 AFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNP 300

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+G
Sbjct: 301 AETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMG 360

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
           TG G + FD++K RY K+++MTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+Y
Sbjct: 361 TGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIY 419

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
           G+  G  ++      + ++  + ++L         +K  I +      +DD    +  + 
Sbjct: 420 GVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQLWETTMD 477

Query: 603 DFYPNHDKTFIEQAVISGVF 622
             +    +  ++ A  +   
Sbjct: 478 PEHRLMARVSVDDAAEADKI 497



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L   +S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 422 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 479

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 480 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 524


>gi|295388308|gb|ADG03050.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 235/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG  EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGLQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGSTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|257168232|gb|ACV40249.1| DNA gyrase subunit B [Yersinia enterocolitica]
          Length = 279

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 153/281 (54%), Positives = 200/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V     + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVAET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+ +       Y+GGI+AFV YL+++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|111114859|ref|YP_709477.1| DNA topoisomerase IV subunit B [Borrelia afzelii PKo]
 gi|216263988|ref|ZP_03435982.1| DNA topoisomerase II (N- region) domain protein [Borrelia afzelii
           ACA-1]
 gi|110890133|gb|ABH01301.1| DNA topoisomerase IV [Borrelia afzelii PKo]
 gi|215980032|gb|EEC20854.1| DNA topoisomerase II (N- region) domain protein [Borrelia afzelii
           ACA-1]
          Length = 599

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 182/600 (30%), Positives = 278/600 (46%), Gaps = 54/600 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   ++ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLISIRDYGRGIPLGK-------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL   +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--ESYDKDGTYVEFLADPE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  D+            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLVINYNDQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASM--------VRDAARRARDLTRRKGVLDIASLPG 412
              +S  L +  + AK+I KKV+D            ++A  RA+ ++ +   L       
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKLKD---CK 384

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
              + S +  +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++
Sbjct: 385 FHFNSSSKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNE 444

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E+  ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG
Sbjct: 445 ELYNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNG 499

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI++ PL+ +   K+  Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 500 HMYILETPLFRVRNKKNTIYCYSEEEKQKAILQLKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|295388304|gb|ADG03048.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 233/396 (58%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K    KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFPKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEG+SAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGNSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|227121271|gb|ACP19327.1| GyrB [Leptospirillum ferriphilum]
          Length = 405

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 200/410 (48%), Positives = 274/410 (66%), Gaps = 7/410 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKFN   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  D PL 
Sbjct: 1   TVLHAGGKFNNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLA 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G      GT + F P   I     F++DTL HR REL+FLN  + I L D+ +   RE
Sbjct: 61  VFGETT-QRGTIIRFWPDMTIMETDQFSFDTLAHRFRELAFLNPVLTIHLKDEET--LRE 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNN 279
            T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL F NN
Sbjct: 118 ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLGFANN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P P+F
Sbjct: 178 IHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIPGPQF 235

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A+DL 
Sbjct: 236 EGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLA 295

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R +QAILPL+GKILN
Sbjct: 296 KRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRSQAILPLKGKILN 355

Query: 460 VERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           VE++R  +K +++ E+  LITA+G G+G++ F   KLRYHKIIIMTDADV
Sbjct: 356 VEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADV 405


>gi|90185708|emb|CAJ84448.1| gyrase B protein [Vibrio parahaemolyticus]
          Length = 393

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 234/395 (59%), Positives = 309/395 (78%), Gaps = 3/395 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIM 393


>gi|269799084|gb|ACZ43820.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 368

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 209/370 (56%), Positives = 275/370 (74%), Gaps = 4/370 (1%)

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHG
Sbjct: 1   DIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHG 60

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS + F
Sbjct: 61  VGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETF 119

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K P
Sbjct: 120 TNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTP 178

Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           + +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + 
Sbjct: 179 INKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLN 238

Query: 302 SYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +
Sbjct: 239 NYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAM 298

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLADC E+
Sbjct: 299 GEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQEK 358

Query: 421 DPKKSELFLV 430
           DP  SEL++V
Sbjct: 359 DPALSELYIV 368


>gi|307939344|gb|ADN95863.1| DNA gyrase B [Hymenobacter norwichensis]
          Length = 433

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 207/435 (47%), Positives = 285/435 (65%), Gaps = 18/435 (4%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGGKF++ SYK SGGLHGVGVS VNALS+   + +KR+G+IYE  ++ GI   
Sbjct: 1   LIMTVLHAGGKFDKNSYKTSGGLHGVGVSCVNALSTHTHVTVKRDGHIYEQEYVIGIPQY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLID---- 212
            +   G    + GT V F P + IF     ++++ +  RLRELS+LN  V+I L D    
Sbjct: 61  DVRQVGDTT-ERGTRVMFQPDATIFDETTEYSFERIASRLRELSYLNRGVRILLTDLREA 119

Query: 213 -KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
            +          F +GG+  +V YLD  +  LM  P+ +   R  I +++A ++ND Y E
Sbjct: 120 DENGEGAVSEEFFSEGGLAEYVQYLDNSRTVLMTKPVYVATER-GIPVEVAFQYNDSYQE 178

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           ++  + NNI   +GGTH++G RSA+TR + +Y EKS    K K  + GDD REG T+++S
Sbjct: 179 HIFSYVNNINTHEGGTHVAGFRSAITRVLKAYAEKSGEVAKAKVEIQGDDFREGLTAIIS 238

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL +SEV   V   V + L+ +LEE+P EA++IV KV+ A+  R A
Sbjct: 239 VKVQEPKFEGQTKGKLGNSEVSGAVNQVVGEILNQYLEENPKEARVIVDKVILAAKARVA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A++AR++ +RK VL   SLPGKLADCSE DP   EL+LVEGDSAGG+AKQGR+R  QAIL
Sbjct: 299 AKKAREMVQRKSVLGSNSLPGKLADCSESDPSICELYLVEGDSAGGTAKQGRNRAFQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGT----------GIGQDSFDINKLRYHKII 501
           PLRGKILNVE+A+  ++  ++EI  +ITALG           G      +++KLRYHK+I
Sbjct: 359 PLRGKILNVEKAQEHRIYENEEIRNMITALGVSFETRTDDEDGSSSRFLNLDKLRYHKVI 418

Query: 502 IMTDADVDGAHIRTL 516
           IMTDA VDG+HIRTL
Sbjct: 419 IMTDAXVDGSHIRTL 433


>gi|107016082|gb|ABF83542.1| DNA gyrase subunit B [Vibrio mimicus]
          Length = 391

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 233/393 (59%), Positives = 303/393 (77%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGETE-RTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+
Sbjct: 60  TTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 239 SEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 SSQEVATLITALGCGIGRDEYNPDKLRYHNIII 391


>gi|19909585|dbj|BAB86988.1| DNA gyrase subunit B [Chromatium sp. HMD001]
          Length = 389

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 240/392 (61%), Positives = 300/392 (76%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS WLKLRI+R G+IYE  +  G    PL   G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLKLRIQRGGHIYEQEYRMGEPVYPLKRVGDTE-QTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS +IF+  DF+YD +  RLRELSFLNS V+I+L ++ +   R     Y+GGI 
Sbjct: 60  TEIRFQPSPEIFTSLDFHYDIMARRLRELSFLNSGVRITLSEEATG--RSDHFEYQGGIR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+ +K+P+  + +     R +IS++LA++WN GY E + C+TN IPQ+DGGTHL+
Sbjct: 118 AFVEHLNSNKEPIHPTVMHFSAERQDISVELAIQWNSGYQETIFCYTNTIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+ALTR + SY+E+    +  K   IGDD REG T+VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GLRAALTRTLNSYIEQEALDRSQKVRAIGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+SVVES V + LS +LEE P EAK I  K+L+A+  RDAAR+AR++TRRKGVLDIA L
Sbjct: 238 EVKSVVESLVAEQLSIFLEETPNEAKSIANKMLEAARARDAARKAREMTRRKGVLDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG++ ++ + LRYH+III
Sbjct: 358 SAEVGTLITALGCGIGREEYNPDNLRYHRIII 389


>gi|224537369|ref|ZP_03677908.1| hypothetical protein BACCELL_02247 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520994|gb|EEF90099.1| hypothetical protein BACCELL_02247 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 623

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 184/652 (28%), Positives = 298/652 (45%), Gaps = 60/652 (9%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYAD 62
           N  Y  D+I+ L  ++ ++ R  MYIG     +    G++ ++ EV+DN+IDE   G   
Sbjct: 12  NVEYTEDNIRHLDDMEHIRVRSGMYIGRLGDGTQNDDGIYVLLKEVMDNSIDEFKMGAGR 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I + +  +   +V D GRGIP            E + ++L+ GGK++ K++K S GL+G
Sbjct: 72  RIEINIEDNLRVSVRDYGRGIPQGK-------LIEAV-SKLNTGGKYDSKAFKKSVGLNG 123

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+  VNALSS  ++R  REG +    F  G L +   VT S   ++GT + F P S +F
Sbjct: 124 VGIKAVNALSSRFEVRSYREGKVRIAIFEKGNLQSD--VTESCNEESGTYIFFEPDSTLF 181

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F  + ++  LR  ++LN+ + I    +R             G+E  ++     +  
Sbjct: 182 LNYSFQANFVETLLRNYTYLNTGLSIIYNGQRIISRH--------GLEDLLNDNMTAQGL 233

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                I ++G      I++A    + Y E    F N      GGTH S L+  + R I  
Sbjct: 234 YN--IIHLKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSALKEHIARTIKE 287

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-------V 355
           +  K+             D R G  + ++I + +P+F  QTK KL S  +          
Sbjct: 288 FYNKNQEYA---------DIRNGIVAAIAINVEEPQFEGQTKTKLGSPSMSPGGVSVNKY 338

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGVLDI 407
           V  F+   +  +L ++PL A+++++K+ D+   R         A  RA+        L  
Sbjct: 339 VGDFIKTEVDNYLHKNPLVAEVMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRKLRD 398

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                      E++ +   +F+ EGDSA GS  + R    QA+  LRGK LN        
Sbjct: 399 CRYHLNDGKGKEQESESC-IFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKV 457

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   L  AL    G     I  LRY+K+I  TDADVDG HIR LL+TFF +  P 
Sbjct: 458 VYENEEFNLLQAALNIEDG-----IEGLRYNKVIAATDADVDGMHIRLLLITFFLQFFPD 512

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G +YI++ PL+ +   K   Y   EE  +  +   S + EI  F    G IS ++ 
Sbjct: 513 LIKKGHVYILQTPLFRVRNKKKTIYCYTEEERQKAIAELSPNPEITRF-KGLGEISPDEF 571

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           R+FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 572 RHFIGKDMRLEQVTLR-KTDLVKELLEFYMGKNTMERQNFIINNLVIEEDLA 622


>gi|255535415|ref|YP_003095786.1| DNA topoisomerase IV subunit B [Flavobacteriaceae bacterium
           3519-10]
 gi|255341611|gb|ACU07724.1| Topoisomerase IV subunit B [Flavobacteriaceae bacterium 3519-10]
          Length = 627

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 167/618 (27%), Positives = 287/618 (46%), Gaps = 56/618 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M++     +Y  D+I+ L   + ++ RP MYIG     S    G++ ++ E++DN+IDE 
Sbjct: 1   MTEQNI-VNYSEDNIRTLDWQEHIRIRPGMYIGKLGDGSSADDGIYILLKEIIDNSIDEF 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           +      I + ++ +G  T+ D GRGIP            + + ++++ GGK++ K++K 
Sbjct: 60  VMKSGKRIEIKID-EGKATIRDFGRGIPLGK-------VVDAV-SKMNTGGKYDSKAFKK 110

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG   VNALS + +++  REG      F  G++           +  GTE+TF+
Sbjct: 111 SVGLNGVGSKAVNALSEYFRVKSVREGKTKIAEFSKGLITRDFPE-ADTSDRNGTEITFI 169

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P S IF+   F  + ++  L+   +LN  ++I    +          F + G++  +   
Sbjct: 170 PDSTIFTHFKFRKEYIEKMLKNYCYLNPGLKIIFNGET--------FFSENGLKDLLQEE 221

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                 ++   + ++     ++I      +    E    F N      GGTHL+  R A 
Sbjct: 222 IEG--EIIYPVVHLKDEDIEVAIT---HSDKSQSETYFSFVNGQNTTQGGTHLNAFREAY 276

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV---- 352
            + I  Y  K+F +          D R+   + ++IK+ +P F SQTK KL S+E+    
Sbjct: 277 VKTIREYFNKNFEAA---------DIRKSIIAAVAIKVIEPVFESQTKTKLGSNEMEPGK 327

Query: 353 ---RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR------DAARRARDLTRRKG 403
              R+ + +F+ + L  +L ++   A+ I +K++ +   R          R R       
Sbjct: 328 ETVRTFITNFLKNKLDNFLHQNQEIAEAIHRKIIISERERKELSGIQKLARERAKKVSLH 387

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              +        D       ++ +F+ EGDSA GS  + R  E QA+  L+GK LN    
Sbjct: 388 NKKLRDCRHHYNDQKALRKSETMIFITEGDSASGSITKSRDVETQAVFSLKGKPLNCYGL 447

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL          +  LRY+ +II TDADVDG HIR L++TFF +
Sbjct: 448 TKRVVYENEEFNLLQAALNI-----EDSLEDLRYNHVIIATDADVDGMHIRLLMITFFLQ 502

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
             P LI NG LYI++ PL+ +   K  +Y   E      L     + EI  F    G IS
Sbjct: 503 FFPDLIKNGHLYILQTPLFRVRNKKETRYCYSEPERLKALNELGKNPEITRF-KGLGEIS 561

Query: 584 KNDLRNFIDDALKIDKLI 601
            ++ ++FI   ++++ ++
Sbjct: 562 PDEFKHFIGKDIRLEPVV 579


>gi|111380378|gb|ABH09622.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 390

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 232/392 (59%), Positives = 305/392 (77%), Gaps = 3/392 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L IKR G+I++  + +G+ D PL V G   ++TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F PS + F+  +F Y+ L  RLRELSFLNS V I L D+R  E +     Y+GGI+A
Sbjct: 60  RIRFWPSEETFTNIEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFMYEGGIQA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+R+K P+          RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+
Sbjct: 119 FVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VES +N+ L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A L
Sbjct: 239 EVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 299 PGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITA+G GIG+D ++ +KLRYH III
Sbjct: 359 SQEVATLITAMGCGIGRDEYNPDKLRYHNIII 390


>gi|88824749|gb|ABD52420.1| gyrase B [Escherichia coli]
          Length = 392

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 237/395 (60%), Positives = 303/395 (76%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMMRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 392


>gi|257168294|gb|ACV40281.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 154/281 (54%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H+EEG+S
Sbjct: 1   TDHGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHEEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL + G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKMVGET-DLTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI AFV YL ++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|85541251|gb|ABC70866.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 392

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 235/394 (59%), Positives = 302/394 (76%), Gaps = 4/394 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GG
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A
Sbjct: 238 SSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 391


>gi|212692587|ref|ZP_03300715.1| hypothetical protein BACDOR_02084 [Bacteroides dorei DSM 17855]
 gi|237709101|ref|ZP_04539582.1| DNA topoisomerase IV subunit B [Bacteroides sp. 9_1_42FAA]
 gi|237724417|ref|ZP_04554898.1| DNA topoisomerase IV subunit B [Bacteroides sp. D4]
 gi|265752624|ref|ZP_06088193.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_1_33FAA]
 gi|212664872|gb|EEB25444.1| hypothetical protein BACDOR_02084 [Bacteroides dorei DSM 17855]
 gi|229437286|gb|EEO47363.1| DNA topoisomerase IV subunit B [Bacteroides dorei 5_1_36/D4]
 gi|229456797|gb|EEO62518.1| DNA topoisomerase IV subunit B [Bacteroides sp. 9_1_42FAA]
 gi|263235810|gb|EEZ21305.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_1_33FAA]
          Length = 625

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 181/659 (27%), Positives = 292/659 (44%), Gaps = 65/659 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           N     Y  D+I+ L  ++ V+ RP MYIG     S    G++ ++ EVLDN+IDE    
Sbjct: 9   NNPAVEYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHAEDGIYVLLKEVLDNSIDEFKMQ 68

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I + +  +   +V D GRGIP            E + + L+ GGK++ K++K S G
Sbjct: 69  AGKKIEIIIEENLRVSVRDYGRGIPQGK-------LIEAV-SVLNTGGKYDSKAFKKSVG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVGV  VNALSS  ++R  R+G +   +F  G L      T +   + GT + F P +
Sbjct: 121 LNGVGVKAVNALSSRFEVRSYRDGKVRIATFAKGDLLTD--TTQNTTEENGTYIFFEPDN 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F    F  + ++  LR  ++LN+ + I    +R           + G+   ++     
Sbjct: 179 LLFENYSFRPEFVETMLRNYTYLNTGLAIIYNGQRI--------LSRNGLVDLLNDNMTA 230

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +   I ++G      I++A      Y E    F N      GGTH S  +  + R 
Sbjct: 231 --VGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIART 284

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS----- 354
           I  Y  K+             D R G  + +++ + +P F SQTK KL S+ +       
Sbjct: 285 IKEYFNKNMDYS---------DIRNGLVAAIAVNVEEPLFESQTKIKLGSTNMAPGGPTV 335

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGV 404
              V  FV   +  +L +H   A ++++K+ ++   R         A  RA+        
Sbjct: 336 NKFVGDFVKTEVDNYLHKHTDVADVMLQKIQESEKERKAIAGVTKLARERAKKANLHNRK 395

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L        L D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 396 LRDCRF--HLNDVKGDKKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLT 453

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     +  LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 454 KKIVYENEEFNLLQAALNIEDG-----MEGLRYNKVIVATDADVDGMHIRLLLITFFLQF 508

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            P LI  G +YI++ PL+ +   K       Y   EE     +   S + EI  F    G
Sbjct: 509 FPDLIKKGHVYILQTPLFRVRNRKKGVYETVYCYSEEERIAAIERLSPNPEITRF-KGLG 567

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
            IS ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   +A
Sbjct: 568 EISPDEFKHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIIDNLVIEEDIA 625


>gi|18147157|dbj|BAB83059.1| DNA gyrase subunit B [Alcanivorax sp. Haw1]
          Length = 393

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 238/396 (60%), Positives = 303/396 (76%), Gaps = 4/396 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+ D PL V G     +
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLEVVG-TTETS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F PS++ FS   F+YD L  RLRELSFLNS V+I L D+RS E       Y+GG+
Sbjct: 60  GTSVHFRPSAETFSNIKFHYDILAKRLRELSFLNSGVRIHLKDERSGEE--EIFEYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFVSYL+ +K PL Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVSYLNVNKTPLNQVFHFQYEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR + +Y++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+  VE  + +    +L E+P EAK I +K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ++DP +SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQQKDPAQSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+GTLITALG GIG+D +++ KLRYH+IIIMT
Sbjct: 358 LSSQEVGTLITALGCGIGRDEYNVEKLRYHRIIIMT 393


>gi|328349763|emb|CBY89189.1| GyrB protein [Flavobacterium sp. R-36961]
          Length = 414

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 184/410 (44%), Positives = 267/410 (65%), Gaps = 7/410 (1%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202
            IYE  +  G    P+   G      GT VTF P   IF+   +++YDTL  R+RELS+L
Sbjct: 61  KIYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSYL 119

Query: 203 NSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + ++  DKR                 G++ ++ YLD +++P++   I +   +  + 
Sbjct: 120 NKGITVTFTDKRELDKDGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDNEKGEVP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 360 AKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTE 409


>gi|295388384|gb|ADG03087.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 233/396 (58%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+++K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVTVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG  D+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGAPDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|27530060|dbj|BAC53885.1| DNA gyrase B subunit [Legionella rubrilucens]
          Length = 282

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 162/284 (57%), Positives = 209/284 (73%), Gaps = 3/284 (1%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAE 97
            +GLHHM++EV+DN+IDE+L G+   I VT++ D S TV D+GRGIP D+HKEEG SAAE
Sbjct: 1   GTGLHHMVFEVVDNSIDEALAGHCKEIFVTIHADESITVKDDGRGIPVDIHKEEGRSAAE 60

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G ++E  + NG+ D 
Sbjct: 61  VIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTIRRHGKVHEQHYRNGVPDA 120

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           PL +TG A N TGT+V F PSS+ FS  +F+YD L  RLRELSFLNS V I L D+R+ +
Sbjct: 121 PLAITGDA-NATGTQVWFKPSSNTFSNIEFHYDILAKRLRELSFLNSGVCIHLFDERTQK 179

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
             + T  Y+GGI+AFV + +R+K P+M     +   +DNI++DL+M+WND + E   CFT
Sbjct: 180 --QDTFRYEGGIQAFVEHFNRNKTPIMPIVFSLTAEKDNITVDLSMQWNDSFQETFFCFT 237

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           NNIPQ+DGGTHL+G R+ALTR + +Y+E    +KK K +  GDD
Sbjct: 238 NNIPQRDGGTHLAGFRAALTRTLNTYIENEGYAKKAKVTTTGDD 281


>gi|224534911|ref|ZP_03675480.1| DNA topoisomerase II domain protein [Borrelia spielmanii A14S]
 gi|224513851|gb|EEF84176.1| DNA topoisomerase II domain protein [Borrelia spielmanii A14S]
          Length = 599

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 184/600 (30%), Positives = 278/600 (46%), Gaps = 54/600 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   T+ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KQNNLITIRDYGRGIPLGK-------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSIRNGKSFEALFSKGNLLESREI--ESSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  D+            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNDQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASM--------VRDAARRARDLTRRKGVLDIASLPG 412
              +S  L +  + AK+I KKV+D            ++A  RA+ ++ +   L       
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKLKD---CK 384

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
              + S    +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++
Sbjct: 385 FHFNSSSNQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNE 444

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E+  ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG
Sbjct: 445 ELYNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNG 499

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
            +YI++ PL+ +   K+  Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 500 HMYILETPLFRVRNKKNTIYCYSEEEKQKAVLQLKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|148616446|gb|ABQ96966.1| GyrB [Nocardiopsis composta]
          Length = 422

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 203/423 (47%), Positives = 279/423 (65%), Gaps = 6/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L+  ++R+G++   ++      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTRLEAEVRRDGHVGRQNYEMTRPA 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             +   G    +TGT++TF     IF    +NY+TL  R++E++FLN  + I+L D+R  
Sbjct: 62  ADVAK-GEETAETGTQITFWADPSIFETTVYNYETLARRMQEMAFLNKGLSITLRDERPE 120

Query: 217 EPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
              +     T  Y  G+  FV +++  K P   S I  +   + IS+++AM+WN  +  +
Sbjct: 121 FVDDGPAVQTFHYDEGLVDFVRHINTKKDPAHASIIDFEEDGEGISVEIAMQWNQSFTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       ++   ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRAALTSIVNRYARDQKLLREKDDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQRVANEHLRDWFERNPGEAKDIVTKASQAARARIAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P+KSEL++VEGDSAGGSAK GR+   QAILP
Sbjct: 301 RQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSELYIVEGDSAGGSAKGGRNPIYQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           +RGKILNVE++R D++L + E+  +ITALGTGI  D FDI KLRYHKII+MTDADVDG+ 
Sbjct: 361 IRGKILNVEKSRIDRILKNNEVQAIITALGTGI-HDDFDIEKLRYHKIILMTDADVDGSL 419

Query: 513 IRT 515
           +RT
Sbjct: 420 VRT 422


>gi|313609060|gb|EFR84778.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL F2-208]
          Length = 308

 Score =  366 bits (940), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 138/314 (43%), Positives = 196/314 (62%), Gaps = 8/314 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  ++Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNAYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ DGS +VSD GRG+P  +H + G    EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHEDGSVSVSDEGRGMPVGMH-KTGKPTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G  Y+  F + G  D  L   G +   TGT + F P   IF
Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               FNY+TL  RLRE +FL   + I LID+R          ++ G++ FV Y++  K  
Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIELIDERVG--MAEVFHFEEGVKNFVEYINEGKDV 235

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L       +G    I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    
Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294

Query: 303 YVEKSFGSKKDKRS 316
           Y  +    K+  ++
Sbjct: 295 YARRVNLLKEKDKN 308


>gi|262404743|ref|ZP_06081298.1| topoisomerase IV subunit B [Vibrio sp. RC586]
 gi|262349775|gb|EEY98913.1| topoisomerase IV subunit B [Vibrio sp. RC586]
          Length = 553

 Score =  366 bits (940), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 189/508 (37%), Positives = 280/508 (55%), Gaps = 10/508 (1%)

Query: 83  IPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
           +P D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R+
Sbjct: 1   MPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRD 60

Query: 143 GNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           G +YE++F +G     L VTG+ G  +TGT V F P +  F   +F+   L + LR  + 
Sbjct: 61  GQVYEIAFEHGDKVTELAVTGTCGRRNTGTSVHFWPDTKYFDSPNFSVSRLVNNLRAKAV 120

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           L   ++I   DK      E    Y+ G++ +++   +    L + P   + +    +   
Sbjct: 121 LCPGLEIIFTDK--VNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAATW 178

Query: 262 A-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           A +   +G       + N IP   GGTH++GLR  L   +  + E      +    + G+
Sbjct: 179 AVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGE 237

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D  +    VLSIKM DP+F+ QTKE+L S +  + V   V D  S WL E P  A+ + +
Sbjct: 238 DVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAE 297

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
             +  +  R    RA     RK +    +LPGKL DC+ +D  ++ELFLVEGDSAGGSAK
Sbjct: 298 VCIANAHSR---MRASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAK 354

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           Q R RE QA++PLRGKILN      D++L+SQE+  +  ++  GI  D+ ++  LRY K+
Sbjct: 355 QARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI--SVALGIDPDNDNLEALRYGKV 412

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
            I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY I  GK + Y  D++  E
Sbjct: 413 CILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKE 472

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLR 588
             L   S  +        KG+   N L+
Sbjct: 473 GVLERLSQKKAKVNVQRFKGLGEMNPLQ 500



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 276 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQD 335

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 336 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 383

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  +      +Y ++             +  +   +      +   
Sbjct: 384 ASQEVHDISVALGIDPDNDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 443

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 444 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 503

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 504 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRTWLQRN 547


>gi|328349761|emb|CBY89188.1| GyrB protein [Flavobacterium sp. R-40832]
          Length = 416

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 184/410 (44%), Positives = 267/410 (65%), Gaps = 7/410 (1%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202
            +YE  +  G    P+   G      GT VTF P   IF+   +++YDTL  R+RELS+L
Sbjct: 61  KVYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSYL 119

Query: 203 NSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + ++  DKR                 G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITVTFTDKRELDKDGNFVSEIFHSDDGLKEYIRYLDGNREPIIAHVISMDHEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 360 AKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTE 409


>gi|157829905|pdb|1AJ6|A Chain A, Novobiocin-Resistant Mutant (R136h) Of The N-Terminal 24
           Kda Fragment Of Dna Gyrase B Complexed With Novobiocin
           At 2.3 Angstroms Resolution
          Length = 219

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 128/219 (58%), Positives = 158/219 (72%), Gaps = 2/219 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 1   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 61  TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185
           VVNALS  L+L I+ EG I+   + +G+   PL VTG     TGT V F PS + F+   
Sbjct: 121 VVNALSQKLELVIQHEGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 179

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +F Y+ L  RLRELSFLNS V I L DKR  +       
Sbjct: 180 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYE 218


>gi|290794993|gb|ADD64515.1| DNA gyrase B [Vibrio tasmaniensis]
          Length = 393

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 238/395 (60%), Positives = 305/395 (77%), Gaps = 3/395 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI
Sbjct: 60  GTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFEYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG H
Sbjct: 119 QAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIM 393


>gi|330685623|gb|EGG97267.1| putative DNA topoisomerase IV subunit B [Staphylococcus epidermidis
           VCU121]
          Length = 344

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 159/348 (45%), Positives = 220/348 (63%), Gaps = 9/348 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N QN  Y  DSIQ+L+GL+AV+KRP MYIG TD   GLHH++YEV+DN++DE L GY
Sbjct: 1   MAMNKQNH-YSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D ITV LN D S ++ DNGRG+PT +H   G    +VI T LHAGGKF Q  YK SGGL
Sbjct: 59  GDEITVILNQDDSISIEDNGRGMPTGIHAS-GKPTVQVIFTILHAGGKFGQGGYKTSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS WL++ I R+GNIY+ SF + G+    L+  G             P  
Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYKQSFKDGGVPATGLLKEGKTKKTGTKVTF-KPDP 176

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     FN+D L  RL+E +FL  +++I LID R  + RE    Y+ GI+ FVSY++ 
Sbjct: 177 EIFKATTSFNFDVLSERLQESAFLLKNLKIKLIDLRRGKEREEYYHYEEGIKEFVSYVNE 236

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L        G+ + I +D+A ++ND Y E++L F NN+  KDGGTH  G ++A+TR
Sbjct: 237 GKEVLH-DVTTFTGTSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTK 344
               Y  +    K+  +++ G+D REG T+++S+++P+   +F  QTK
Sbjct: 296 VFNDYARRINELKEKDKNLDGNDIREGLTAIVSVRIPEELLQFEGQTK 343


>gi|332881000|ref|ZP_08448670.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681174|gb|EGJ54101.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 655

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 175/694 (25%), Positives = 294/694 (42%), Gaps = 71/694 (10%)

Query: 1   MSDNIQNSS------YDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLD 50
           M++  + +       Y  D I+ L  ++ ++ RP MYIG     S    G++ ++ EV+D
Sbjct: 1   MAEEEKPNEAPILTEYTEDHIRHLSDMEHIRTRPGMYIGKLGDGSHAEDGIYVLLKEVID 60

Query: 51  NAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           N+IDE        I +T+  +   +V D GRGIP        I A  +    L+ GGK++
Sbjct: 61  NSIDEFKMNAGRRIEITVEDNLRVSVRDYGRGIPLGKL----IEAVSM----LNTGGKYD 112

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K++K S GL+GVGV  VNALSS  ++R  R+G +   +F  GIL      T    ++ G
Sbjct: 113 SKAFKKSVGLNGVGVKAVNALSSHFEVRSHRDGEMRRATFERGILTG--ESTEPTADENG 170

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F P S +F    F  + ++  LR  ++LN+ + I    +R           + G+ 
Sbjct: 171 TFIYFEPDSALFKNYTFRTEFIETMLRNYTYLNTGLTIMFNGRRI--------HSRNGLV 222

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             ++    +    +   I ++G      I++A      Y E    F N      GGTH S
Sbjct: 223 DLLNDNMTN--DGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQS 276

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS- 349
             +  +   I  +  K+F            D R G  + ++I + +P F SQTK KL S 
Sbjct: 277 AFKKHIAETIKDFSGKNFDYG---------DIRNGLVAAIAINIEEPLFESQTKIKLGSL 327

Query: 350 -------SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA------RRAR 396
                    +   V  FV + +  +L ++   A II++K+ +    R A        R R
Sbjct: 328 TTIPDGGISIDKFVGDFVKEQVDNYLHKNTDIADIIIQKITENEKERKAIAGVTKLARER 387

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
                     +      L D      + S +F+ EGDSA GS  + R    QA+  LRGK
Sbjct: 388 AKKANLHNRKLRDCRIHLNDAKGDLKEDSSIFITEGDSASGSITKSRDVTTQAVFSLRGK 447

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
            LN        +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L
Sbjct: 448 PLNCFGLTKKVVYENEEFNLLQAALNIEDG-----LDGLRYNKVIVATDADVDGMHIRLL 502

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           ++TFF +  P LI  G +YI++ PL+ +   K+    +  + LE+               
Sbjct: 503 MITFFLQFFPELIKKGHVYILQTPLFRVRNRKNKIGKQKLKELEEEAKAAKSDFITRYCY 562

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA- 635
             +  ++  +      +  +    + +  P+  K FI   +     +     ++   L  
Sbjct: 563 SDEERVAAIEALGPDPEITRFKG-LGEISPDEFKHFIGPDIRLEQVSLHKSDQVKELLEY 621

Query: 636 -------SKLANRLNFIAEKSEKSWHGSINNSDI 662
                   +    +N +  + +++       + I
Sbjct: 622 YMGKNTMERQNFIINNLVIEEDRAEEDETAETAI 655


>gi|189502056|ref|YP_001957773.1| DNA topoisomerase IV subunit B [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497497|gb|ACE06044.1| hypothetical protein Aasi_0648 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 626

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 170/626 (27%), Positives = 276/626 (44%), Gaps = 58/626 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           + N  Y   +I+ L   + ++ RP MYIG     S    G++ +  EV+DN+IDE + GY
Sbjct: 1   MINHQYTEANIRSLDWREHIRLRPGMYIGKLGDGSAQDDGIYVLFKEVIDNSIDEYVMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSG 118
              I + L      TV D GRGIP             V+     ++ GGK++ +S++ S 
Sbjct: 61  GKRIDIQLTA-SQVTVRDFGRGIPLGK----------VVDCVSKINTGGKYDTQSFQKSV 109

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG   VNALS+  K +  REG      F  G L              GT ++F P 
Sbjct: 110 GLNGVGTKAVNALSAHFKAQSFREGKTKVAIFSQGKLLEE-SPIQDTKEKDGTLISFEPD 168

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             +F+   F    ++ +L   +FLN+ ++I L  +          F K G+   ++    
Sbjct: 169 PTLFNNFRFLPHFVEEQLWNYAFLNAGLKIYLNGQE--------YFSKNGLLDLLNRKTD 220

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +                  I++A+  N+ Y E    F N      GGTHL+  + A  +
Sbjct: 221 EESLCYPIIHMKDTD-----IEIALTHNNQYGEEYYSFVNGQFTTQGGTHLAAFKEAFAK 275

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SE 351
            I  + +K F +          D R      +S+++ +P F SQTK KL S         
Sbjct: 276 TIRDFYKKDFDAT---------DIRASVVGAISVRVQEPVFESQTKTKLGSQQIGPEGPS 326

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA 408
           +R+ +  FV   L  +L ++P  A+ ++ ++L +   R      +   +   +K  L   
Sbjct: 327 IRTFINDFVKRELDNYLHKNPETAEALLSRILQSERERKDIAGIKKLANERAKKASLHNK 386

Query: 409 SLPGKLADCSERDPK--KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            L       +        S +F+ EG+SA GS  + R  + QA+  LRGK LN       
Sbjct: 387 KLRDCRIHYNTTHKDRDNSMVFITEGNSASGSITKSRDVQTQAVFSLRGKPLNCFGYTKK 446

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E+  L  AL    G     +  LRY K+II TDADVDG HIR L+LT+F +  P
Sbjct: 447 LVYENEELNLLQHALNIEDG-----LEGLRYRKVIIATDADVDGMHIRLLILTYFLQFFP 501

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            L+ NG +Y+++ PL+ +   +   Y  +E   +  +       EI  F    G IS ++
Sbjct: 502 ELVRNGHVYLLETPLFRVRNKQKTLYCYNETEKQQAIQQLGKQPEITRF-KGLGEISADE 560

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTF 612
            +NFI   ++I+ +      +  +  
Sbjct: 561 FKNFIGTQMRIEPVTLRKETSIHQLL 586


>gi|154347396|dbj|BAF74639.1| DNA gyrase subunit B [Streptobacillus moniliformis]
          Length = 438

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 205/444 (46%), Positives = 272/444 (61%), Gaps = 24/444 (5%)

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           S  EVIMT LHAGGKF+  +Y+ SGGLHGVG+SVVNALS  L+  + R+G +    F  G
Sbjct: 1   SRVEVIMTVLHAGGKFDNSNYQFSGGLHGVGISVVNALSEKLEATVTRDGKVVRQIFSKG 60

Query: 154 ILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
                 +  G A     GT + F P +DIF    F+YD LQ RL+EL++LN  ++I LID
Sbjct: 61  NAITEALEIGKAPAKAHGTTIKFKPDADIFETIQFDYDILQRRLKELAYLNQGIKIILID 120

Query: 213 -KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI-------QGS---------RD 255
            ++  + +E   +++GGI  FV+     +  +++  I +       +G            
Sbjct: 121 ARKPEKVKEEVFYFEGGIVDFVTE-LVGEDKIIEDVIYMKDRVMLTEGEVDDEGNPIPDK 179

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM + +        F NNI   DGGTH+SGLR+ALTR I     +       K 
Sbjct: 180 YSEVEIAMIYKNSQSTIEYSFVNNINTSDGGTHVSGLRTALTRTINDLARE----ASSKN 235

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
              G+D REG   VLS+K P+P+F SQTK KL SSE  S+V       L  +LE+HP + 
Sbjct: 236 EFKGEDVREGLVYVLSLKFPEPQFESQTKAKLGSSEATSIVSGVFGSKLKMYLEDHPKDC 295

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K I+ K+  +   R+AA+RARDL  +K    +  LPGKLADC  ++P++SE+F+VEGDSA
Sbjct: 296 KTIIDKIAISKQAREAAKRARDLVTKKNEFSLGGLPGKLADCQSKNPEESEIFIVEGDSA 355

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAKQGR +E QAILPLRGKILNVE+A   K+L + EI  +ITA G G G D FDI KL
Sbjct: 356 GGSAKQGRFKEYQAILPLRGKILNVEKANEHKILENSEIKAMITAFGAGFG-DRFDIEKL 414

Query: 496 RYHKIIIMTDADVDGAHIRTLLLT 519
           RYHK+IIMTDADVDG+HIRTLL  
Sbjct: 415 RYHKVIIMTDADVDGSHIRTLLTC 438


>gi|324039428|dbj|BAJ78467.1| DNA gyrase subunit B [Alcanivorax sp. Shm-2]
          Length = 393

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 240/396 (60%), Positives = 306/396 (77%), Gaps = 4/396 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+  NPL V G   + +
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYHHGVPANPLEVVG-TTDSS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+
Sbjct: 60  GTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFVSYL+ +K  L Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVSYLNTNKTALNQVFHFNFEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + SY++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAALTRTLNSYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+GTLITALG GIG+D ++I+KLRYH+IIIMT
Sbjct: 358 LSSQEVGTLITALGCGIGRDEYNIDKLRYHRIIIMT 393


>gi|323343732|ref|ZP_08083959.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
 gi|323095551|gb|EFZ38125.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
          Length = 657

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 164/562 (29%), Positives = 265/562 (47%), Gaps = 55/562 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           +IQ  SY  ++I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN+IDE    
Sbjct: 12  DIQPVSYTDENIRHLSDMEHVRTRPGMYIGRLGDGSLPEDGIYVLLKEVIDNSIDEFKMN 71

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I + +  +   TV D GRGIP            E + + L+ GGK++ K++K S G
Sbjct: 72  AGKRIEIDIEENLRVTVRDYGRGIPQGK-------LVEAV-SVLNTGGKYDSKAFKKSVG 123

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVGV  VNALSS  +++  REG + +++F  G        T  + ++TGT + F P  
Sbjct: 124 LNGVGVKAVNALSSRFEVKSFREGKVRDITFERGEKKTD--KTSKSTDETGTFIYFEPDD 181

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F    F+ D ++  LR  ++LNS + I    +R           + G+E  ++    +
Sbjct: 182 TLFQNYQFHDDIVETMLRNYTYLNSGLAIMYNGRRI--------LSRNGLEDLLNDNMTN 233

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +   I I+G      I++A    + Y E    F N      GGTH S  +  + R 
Sbjct: 234 --DGLYPIIHIKGED----IEVAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIART 287

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS----- 354
           I  +  K++            D R G  + ++I + +P F SQTK KL S+ +       
Sbjct: 288 IKEFYNKNYEY---------IDIRNGLVAAIAINVEEPVFESQTKIKLGSTLMAPNGETI 338

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA------RRARDLTRRKGVLD 406
              V  F+   +  +L  HP  A+++  K+ ++   R A        R R          
Sbjct: 339 NKYVGDFLKKEVDNFLHIHPDVAEVMENKIKESERERKAMAGVTKLARERAKKANLHNRK 398

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +       +D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN       
Sbjct: 399 LRDCRIHYSDTKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKK 458

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  P
Sbjct: 459 VVYENEEFNLLQAALDIEEG-----LDTLRYNKVIVATDADVDGMHIRLLIITFFLQFFP 513

Query: 527 SLIHNGFLYIIKPPLYGITRGK 548
            LI  G +++++ PL+ +   +
Sbjct: 514 ELIKKGHVFVLQTPLFRVRNRR 535


>gi|328349765|emb|CBY89190.1| GyrB protein [Flavobacterium sp. R-36963]
          Length = 414

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 184/410 (44%), Positives = 267/410 (65%), Gaps = 7/410 (1%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202
            +YE  +  G    P+   G      GT VTF P   IF+   +++YDTL  R+RELS+L
Sbjct: 61  KVYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSYL 119

Query: 203 NSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + ++  DKR                 G++ ++ YLD +++P++   I +   +  I 
Sbjct: 120 NKGITVTFTDKRELDKDGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 360 AKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTE 409


>gi|119369926|gb|ABL67977.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 422

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 197/426 (46%), Positives = 279/426 (65%), Gaps = 9/426 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH GGKF++ +YKVSGGLHGVGVS VNALS  L + + + G  +   F  G   
Sbjct: 1   EVIMTVLHGGGKFDKATYKVSGGLHGVGVSCVNALSKKLHVEVYQNGKAWCDGFCQGQTS 60

Query: 157 NPLVV-TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
                  G          +FL     F   +          +         Q  L D+R 
Sbjct: 61  AYPENGRGDNEARN--ARSFLARWHHFYRDELRLGCAPQAPKRSRIPQPRHQNFLSDERD 118

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI----QGSRDNISIDLAMRWNDGYHE 271
            E  E+ ++Y+GGI +FVSYL+ +K P+   P+ +    +G+   + +++AM+WND Y E
Sbjct: 119 TEHPELCLYYEGGIVSFVSYLNENKLPMFPKPMYVHGIKEGTDGPVEVEVAMQWNDTYTE 178

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  + NNI  + GGTH+SG  +ALTR + +Y++    +  +K SV GDD REG T+V+S
Sbjct: 179 NLHSYVNNIATRQGGTHVSGFSTALTRVLNNYIKAHQKA--EKISVTGDDMREGLTAVIS 236

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+P+P+F  QTK++L +S+V S+V+    + L+ +L+E+P  A++I +K + A+  R+A
Sbjct: 237 VKVPNPQFEGQTKQRLGNSDVGSIVQMICGEQLATFLDENPAIARLICEKAMIAAQAREA 296

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A++AR+LT RK  LD   LPGKL DC ERDP+  E+++VEGDSAGGSAK GR R  QAIL
Sbjct: 297 AKKARELTLRKTALDSGRLPGKLTDCQERDPELCEIYIVEGDSAGGSAKMGRDRRFQAIL 356

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           P+RGKILNVE+AR +K+L + E+G++I A G GIG+D+F++ KLRYHKIIIMTDADVDG+
Sbjct: 357 PIRGKILNVEKARLEKILQNTEVGSMIAAFGCGIGKDNFNLEKLRYHKIIIMTDADVDGS 416

Query: 512 HIRTLL 517
           HIRTLL
Sbjct: 417 HIRTLL 422


>gi|58530652|dbj|BAD89280.1| DNA gyrase B [Ferrimonas balearica]
          Length = 390

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 229/393 (58%), Positives = 298/393 (75%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L ++R+G+I+E  +  G    PL   G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PSS IFS   F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI 
Sbjct: 60  TTIRFWPSSQIFSDTTFHYDILAKRLRELSFLNSGVSIRLVDERDAKE--DHYCYEGGIH 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+++K P+ Q        R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVEFLNQNKTPVHQQVFHFTTEREDGIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  + + L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVEQTMGEQLQDFLLENPGDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITA+G GIG+D ++ +K RYH III
Sbjct: 358 SSQEVATLITAMGCGIGRDEYNPDKTRYHNIII 390


>gi|28436086|dbj|BAC57433.1| gyrase B subunit [Pseudoalteromonas piscicida]
 gi|283489193|gb|ADB24862.1| gyrase B subunit [Pseudoalteromonas flavipulchra]
          Length = 390

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 238/392 (60%), Positives = 308/392 (78%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G +++  +  G+ D PL V G A   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVHQQKYTMGVPDAPLGVIGEAE-STG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS++ FS  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+
Sbjct: 60  TELRFWPSAETFSDTNFHYDILAKRLRELSFLNSGVSIILNDER-EENKQDHFKYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV+YL+R K P+ QS       RD+ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVAYLNRKKTPVHQSVFHFSTERDDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y+EK   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNTYMEKEGFNKKYKTSATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+  VE  + + L+ +L E+P +AK +V K++DA+  R+AAR+AR++TRRKGV+D+A 
Sbjct: 239 SEVKGAVEQMMAEKLTEFLLENPGDAKTVVNKIVDAARAREAARKAREMTRRKGVMDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SSQE+ TLITALG GIG+D ++  KLRYH+II
Sbjct: 359 SSQEVATLITALGCGIGRDEYNPEKLRYHRII 390


>gi|307939348|gb|ADN95865.1| DNA gyrase B [Hymenobacter sp. NS/2(2010)]
          Length = 429

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 202/431 (46%), Positives = 285/431 (66%), Gaps = 19/431 (4%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF++ SYK SGGLHGVGVS VNALS+   + +KR+G+IYE  ++ G+    +
Sbjct: 1   MTVLHAGGKFDKNSYKTSGGLHGVGVSCVNALSTHTHVTVKRDGHIYEQEYVIGVPQYDV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLI----DKR 214
              G    + GT V F P   IF     ++Y+ +  RLRELS+LN  ++I L      + 
Sbjct: 61  RKVGDTT-ERGTLVRFQPDETIFDETLIYSYERIATRLRELSYLNRGIRIVLTDLRTPED 119

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
             EP++   + +GG+  +V YLD  +  LM  P+ +   R  I +++A ++ND + E++ 
Sbjct: 120 GGEPQQSEFYSQGGVAEYVQYLDNSRTVLMHKPVYVATER-GIPVEVAFQYNDSFQEHIY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTH+SG R+A+TR + +Y EKS    K K  + GDD REG T+V+S+K+
Sbjct: 179 SYVNNINTHEGGTHVSGFRAAITRVLKAYAEKSGEVAKAKVEIQGDDFREGLTAVISVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV   V + V + L+ +LEE+P EA++I+ KV+ A+  R AA++
Sbjct: 239 AEPKFEGQTKGKLGNSEVNGAVNTVVGEILNQYLEENPKEARVIIDKVILAAKARIAAKK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++ +RK VL   SLPGKLADCSE DP+  E++LVEGDSAGG+AKQGR+R  QAILPLR
Sbjct: 299 AREMVQRKTVLGSNSLPGKLADCSESDPEICEIYLVEGDSAGGTAKQGRNRAFQAILPLR 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF------------DINKLRYHKIII 502
           GKILNVE+A+  ++L ++EI  +ITALG   G  +             +I KLRYHK+II
Sbjct: 359 GKILNVEKAQEHRILENEEIRNMITALGVTFGMPADPETGAEADARALNIAKLRYHKVII 418

Query: 503 MTDADVDGAHI 513
           MTDA VDG+HI
Sbjct: 419 MTDAXVDGSHI 429


>gi|126035244|gb|ABN72375.1| gyrase B subunit [Enterobacter cloacae]
          Length = 392

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 238/395 (60%), Positives = 304/395 (76%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYTHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 392


>gi|307939314|gb|ADN95848.1| DNA gyrase B [Hymenobacter glaciei]
          Length = 435

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 207/436 (47%), Positives = 289/436 (66%), Gaps = 21/436 (4%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T L AGGKF++ SYKVSGG HGVGVS VNALS+ LK+ ++R G+ YE  +  G    P+ 
Sbjct: 1   TVLXAGGKFDKGSYKVSGGPHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGFPQYPVK 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----P 216
             G    + GTEV FLP + IF+   + YD +  RLR+LS+LN  ++I+L D+R      
Sbjct: 61  EVGDTA-EHGTEVQFLPDASIFTETVYQYDKVAGRLRDLSYLNKGIRITLTDRRETVEDG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
             R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV  
Sbjct: 120 SFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVYS 179

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+ 
Sbjct: 180 YVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVDITGDDFREGLTAVISVKVM 239

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+A
Sbjct: 240 EPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARKA 299

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +D+ +RKGVL   SLPGKLADCSE DP   EL+LVEGDSAGG+AKQGR+R  QAI+PLRG
Sbjct: 300 KDMVQRKGVLSSNSLPGKLADCSESDPAICELYLVEGDSAGGTAKQGRNRAFQAIMPLRG 359

Query: 456 KILNVERARFDKMLSSQEIGTLITALG---------------TGIGQDSFDINKLRYHKI 500
           KILNVE+A+  ++L ++EI  +ITALG               TG+     + +KLRYHK+
Sbjct: 360 KILNVEKAQEHRILENEEIRNMITALGVSFNERKSLAFTTDDTGVETGPLNFDKLRYHKV 419

Query: 501 IIMTDADVDGAHIRTL 516
           IIMT ADVDG+HIRTL
Sbjct: 420 IIMTXADVDGSHIRTL 435


>gi|297568942|ref|YP_003690286.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924857|gb|ADH85667.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 608

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 163/608 (26%), Positives = 276/608 (45%), Gaps = 56/608 (9%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADIIT 65
           YD   I+ L  L+ ++ RP MYIG     S    G++ ++ EV+DN +DE + G    I 
Sbjct: 8   YDESKIKTLSSLEHIRLRPGMYIGRLGNGSHPDDGIYILLKEVIDNGVDEFIMGAGKTIE 67

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           + +  +GS  V D GRGIP      E +S        ++ G K+N  +++ S GL+GVG 
Sbjct: 68  IAVGEEGSVRVRDYGRGIPLGK-LVECVS-------VINTGAKYNTDAFQFSVGLNGVGT 119

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
             VNALS   ++   R+G      F+ G L       G +    GT V F P   +F   
Sbjct: 120 KAVNALSRRFEVTSFRDGEFARAVFVAGELQE--EEKGLSKEKNGTLVEFQPDPAMFPDY 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            FN + ++ RL+  ++LN+ + +    +          + + G+   +          + 
Sbjct: 178 TFNREFIRKRLKRYAYLNAGLHLDFDGES--------FYSEKGLLDLLEAETSG--TQLY 227

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            PI  +      +I+ A    D Y E    F N     +GGTHLS  R  L + I  +  
Sbjct: 228 EPIHFRDK----TIEFAFAHTDNYGETYFSFVNGTYTNEGGTHLSAFREGLLKGINEFAG 283

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K            G+D REG    +++K+ +P F SQTK KL ++++R+ + + V D +S
Sbjct: 284 K---------KFDGEDVREGVVGAVAVKVREPIFESQTKNKLGNTDIRAGIVAVVRDEVS 334

Query: 366 AWLEEHPLEAKIIVKKVLDASM--------VRDAARRARDLTRRKGVLDIASLPGKLADC 417
           A+L ++   A++++ K+  ++          ++A  +AR +  +   L            
Sbjct: 335 AFLYKNTELAELVIDKIQQSARVRKELQHVRKEAKAKARKVALKIPQLKDCKYHPAPGKP 394

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
                +++ +FL EG SA GS    R    QA+  L+GK  NV       +  + E+ ++
Sbjct: 395 -SPSGRENMIFLTEGQSASGSIVSARDPMTQAVFSLKGKPYNVYGQPLATLYKNDEMYSI 453

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           + AL          I +LR+ KIII TDADVDG HIR L+LTFF     SL+  G +YI+
Sbjct: 454 MRAL-----DIEDSIGRLRFDKIIIATDADVDGLHIRNLILTFFLHYFESLVKRGHVYIL 508

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD-----SKGVISKNDLRNFID 592
           + P++ +   +   Y   ++   +     +         +       G IS  + + FI 
Sbjct: 509 ETPIFRVRNKEETIYCYSDKERTEAEKKLAGRGSKRRPVEITRFKGLGEISPKEFKQFIG 568

Query: 593 DALKIDKL 600
             +++ ++
Sbjct: 569 PDMRLQQV 576



 Score = 42.7 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 22/137 (16%)

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
           G+  + ++    +  F S  KR     +E     I  +    + I         +    +
Sbjct: 481 GLHIRNLILTFFLHYFESLVKRGHVYILE---TPIFRVRNKEETIYCYSDKERTEAEKKL 537

Query: 730 GRKG-----ISMQRYKGLGEMNASQ------LWETTLNPDTRSLLRVKITDASQADDLFS 778
             +G     + + R+KGLGE++  +             PD R L +V I   S+   +  
Sbjct: 538 AGRGSKRRPVEITRFKGLGEISPKEFKQFIG-------PDMR-LQQVDIDTLSEVPRILE 589

Query: 779 RLMGDEVEPRREFIQEN 795
             MG     RRE+I  +
Sbjct: 590 FYMGKNTPDRREYIMAH 606


>gi|15530010|gb|AAL01493.1| gyrase B [Shewanella sp. 184]
          Length = 393

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 231/396 (58%), Positives = 305/396 (77%), Gaps = 4/396 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G+ D P+   G A   T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDAT-KT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS   FS  +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI
Sbjct: 60  GTEIRFWPSEQTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+ 
Sbjct: 238 SSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLG 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +K RYH IIIMT
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMT 393


>gi|295442414|gb|ADG21186.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKV GGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVLGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|147917473|gb|ABQ52589.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 390

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 233/392 (59%), Positives = 307/392 (78%), Gaps = 3/392 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 239 VKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           QE+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRYHNIIIM 390


>gi|257168264|gb|ACV40265.1| DNA gyrase subunit B [Yersinia kristensenii]
          Length = 279

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 156/281 (55%), Positives = 200/281 (71%), Gaps = 4/281 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDISVSVQDDGRGIPTGMHDEEGVS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+
Sbjct: 61  AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGV 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
              PL V G   + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DK
Sbjct: 121 PQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDK 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R+   RE    Y+GGI AFV YL ++K P+          +D+I +++A++WNDG+ EN+
Sbjct: 180 RND--REDHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENI 237

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
            CFTNNIPQ+DGGTHL G R+A+TR + SY++K   SKK K
Sbjct: 238 YCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|284037454|ref|YP_003387384.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
           [Spirosoma linguale DSM 74]
 gi|283816747|gb|ADB38585.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Spirosoma linguale DSM 74]
          Length = 632

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 172/639 (26%), Positives = 288/639 (45%), Gaps = 65/639 (10%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDE 55
           M++ +  +  Y+ DSI+ L   + ++ RP MYIG     S    G++ +I E +DN IDE
Sbjct: 1   MAELLNQAVQYNEDSIRSLDWREHIRLRPGMYIGKLGDGSAADDGIYVLIKETIDNCIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
            + G+  +I V +  D    V D GRGIP            EV+ ++++ GGK++  +++
Sbjct: 61  HVMGFGKVIEVRV-TDHRVEVRDFGRGIPLGK-------VVEVV-SKINTGGKYDSGAFQ 111

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEV 173
            S GL+GVG   VNALSS+ +++  REG      F  G     L   G        GT +
Sbjct: 112 KSVGLNGVGTKAVNALSSYFRVQSFREGKTVWAEFDRG----ELKQRGEDATTERNGTLI 167

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P   +F    F    L++ +    +LN+ + IS   ++           + G+   +
Sbjct: 168 CFEPDDTVFKHFHFIPQFLENMIWNYCYLNAGLTISFNKQK--------YLSQNGLLDLL 219

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
               +  +    S            +++A+   + Y E    F N      GGTHL+ L+
Sbjct: 220 RDKTKKDE---DSLRYPIIHLKGNDLEIALTHGNQYGEEYYSFVNGQYTTQGGTHLNALK 276

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            A+   +  + +K+             D R    + +SI++ +P F SQTK KL S  + 
Sbjct: 277 EAVVETVRRHFDKN---------YEVSDIRSSIIAAVSIRVQEPVFESQTKTKLGSQNMS 327

Query: 354 S---------VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRR 401
                      V+ FV + L  +L  +P   + + K++  +   R      +   +   +
Sbjct: 328 PEPNAQSVSSFVKDFVKERLDDFLHMNPAVREALKKRIEQSERERKELAGIKKLANDRAK 387

Query: 402 KGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           K  L           L D    D  +S LF+ EGDSA GS  + R+ ++QA+  LRGK L
Sbjct: 388 KASLHNKKLRDCRNHLPDLKADDRYQSTLFITEGDSASGSITKSRNVQSQAVFSLRGKPL 447

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N        +  ++E   L  AL    G     +  LRY++I+I TDADVDG HIR L+L
Sbjct: 448 NCFGLTKKVVYENEEFNLLQHALDIEDG-----LEGLRYNRIVIATDADVDGMHIRLLML 502

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-----YVKDEESLEDYLINQSLSEEIE 573
           TFF +  P L+ NG LYI++ PL+ +   K+ +     Y +DE+      + ++  +   
Sbjct: 503 TFFLQFFPDLVRNGHLYILETPLFRVRNPKNHKETTYCYSEDEKQKAIDKLTKAAKKVEI 562

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
                 G IS ++   FI + ++++ +I +   +  K  
Sbjct: 563 TRFKGLGEISPDEFGLFIGENMRLEPVIMEKETSVPKLL 601


>gi|329956512|ref|ZP_08297109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328524409|gb|EGF51479.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 662

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 173/654 (26%), Positives = 294/654 (44%), Gaps = 60/654 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
                Y+ D+I+ L  ++ ++ R  MYIG     S    G++ ++ EV+DN+IDE   G 
Sbjct: 49  NSEVEYNEDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGA 108

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V +  +   +V D GRGIP            E + ++L+ GGK++ K++K S GL
Sbjct: 109 GKRIEVNIEENLRVSVRDYGRGIPQGK-------LVEAV-SKLNTGGKYDSKAFKKSVGL 160

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG+  VNALSS  ++R  R+G +  + F  G+L + +     +  + GT + F P + 
Sbjct: 161 NGVGIKAVNALSSRFEVRSYRDGKVRAVIFEKGVLQSDITQ--DSTEENGTYIFFEPDNT 218

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F    F    ++  LR  ++LN+ +      +R             G+E  +       
Sbjct: 219 LFLNYSFQNQFVETLLRNYTYLNTGLTFIYNGQRIISRH--------GLEDLLKDNMT-- 268

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +   + ++G      I++A    + Y E    F N      GGTH + L+  + R I
Sbjct: 269 SEGLYDIVHLKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTALKEHIARTI 324

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SEVR 353
             +  K+             D R G  + ++I + +P F SQTK KL S         V 
Sbjct: 325 KEFFNKNQDYA---------DIRNGLVAAIAIDVEEPMFESQTKTKLGSNNMWPEGPTVN 375

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGVL 405
             V  F+   +  +L ++PL ++++++K+ D+   R         A  RA+        L
Sbjct: 376 KYVGDFIKTEVDNYLHKNPLVSEVMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRKL 435

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
                        +++ +   +F+ EGDSA GS  + R    QA+  LRGK LN      
Sbjct: 436 RDCRFHLSDGKGKDQEAESC-IFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTK 494

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR L++TFF +  
Sbjct: 495 KVVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLIITFFLQFF 549

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P LI  G +YI++ PL+ +   K   Y   E+     +     + EI  F    G IS +
Sbjct: 550 PDLIKKGHVYILQTPLFRVRNKKKTNYCYTEDERVKAIEELGPNPEITRF-KGLGEISPD 608

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           + ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 609 EFKHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 661


>gi|298208510|ref|YP_003716689.1| DNA topoisomerase IV subunit B [Croceibacter atlanticus HTCC2559]
 gi|83848433|gb|EAP86302.1| DNA topoisomerase IV subunit B [Croceibacter atlanticus HTCC2559]
          Length = 618

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 186/660 (28%), Positives = 292/660 (44%), Gaps = 63/660 (9%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
           Q + Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN+IDE +    
Sbjct: 3   QETKYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNSIDEFVMNAG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I +++  +    V D GRGIP    K+        ++++++ GGK++ K++K S GL+
Sbjct: 63  KTIEISIQGE-RVIVRDYGRGIPLGKVKD--------VVSKMNTGGKYDSKAFKKSVGLN 113

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG   VNALSS+ ++   R+G      F  G L +            GT+VTF+P   I
Sbjct: 114 GVGTKAVNALSSYFRVESSRDGKSASAEFAQGNLTDE-EFLDETSRRRGTKVTFIPDEAI 172

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    +  + +   L+   +LN  + I    +R         + + G++  +S   R   
Sbjct: 173 FKNYKYRSEYVAKMLKNYVYLNPGLTIVFNGER--------FYSENGLKDLLSDTIREDD 224

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L    I ++G    ++I         Y E    F N      GGTH S  R A+ + + 
Sbjct: 225 RLYP-IIHLKGDDIEVAIT---HSKTQYSEEYHSFVNGQHTTQGGTHQSAFREAIVKTVR 280

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------RS 354
            +  K+             D R+   S ++IK+ DP F SQTK KL S+++       R+
Sbjct: 281 EFYGKN---------YESSDIRKSVVSAIAIKVMDPVFESQTKTKLGSTDMGGDFPTVRT 331

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            +  F+   L  +L  H   A  + KK+L A   R      R L  R      +    KL
Sbjct: 332 YINDFLKTKLDNYLHRHQDVADQLQKKILQAERERKDLSGIRKL-ARDRAKKASLHNKKL 390

Query: 415 ADCSERDPKK-------SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            DC              + LF+ EGDSA GS  + R    QA+  L+GK LN        
Sbjct: 391 RDCRIHLGDHKKDRYLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNSYGLSKKI 450

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   L  AL          I  LRY+ I+I TDADVDG HIR LL+TFF +  P 
Sbjct: 451 VYENEEFNLLQAALNI-----EDSIEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFPE 505

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LYI++ PL+ +   K   Y   E    + +   S   EI  F    G IS ++ 
Sbjct: 506 VIKEGHLYILQTPLFRVRNKKETVYCYSEFEKREAIEKLSGKAEITRF-KGLGEISPDEF 564

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
           + FI + +++D ++ D   +        A +   +  ++  +    +   L   L+ I E
Sbjct: 565 QYFIGEDIRLDPVMLDQDMSI-------AELLEFYMGKNTSDRQEFIIDNLKVELDVIEE 617


>gi|225012783|ref|ZP_03703217.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Flavobacteria bacterium MS024-2A]
 gi|225003057|gb|EEG41033.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Flavobacteria bacterium MS024-2A]
          Length = 620

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 185/664 (27%), Positives = 300/664 (45%), Gaps = 67/664 (10%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
             ++Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EVLDN IDE + G  
Sbjct: 3   NQTAYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSPDDGIYILLKEVLDNCIDEFVMGAG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I +T+  +   TV D GRGIP            +V+ ++++ GGK++ +++K S GL+
Sbjct: 63  KTIEITI-KESQVTVRDFGRGIPLGK-------VVDVV-SKMNTGGKYDSRAFKKSVGLN 113

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSD 180
           GVG   VNALSS   ++  R+      SF  G L  +P      +    GT+V F P   
Sbjct: 114 GVGTKAVNALSSSFVVQSNRDKQSKTASFEFGNLNLDPPAE--ESSRRRGTKVVFTPDVG 171

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +  + ++  ++   +LN  + I L  ++           + G+   ++      
Sbjct: 172 IFKNYKYRLEYVERMIKYYVYLNLGLTIELNGEK--------FISENGLLDLLTDQTNEN 223

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
                  I ++G+   +++         Y E    F N      GGTH +  R  L + +
Sbjct: 224 DLSYP-IIHLRGNDIEVALT---HSKTQYSEEYHSFVNGQHTTQGGTHQAAFREGLVKTV 279

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV-------R 353
             Y  K++ +          D R+   S +SIK+ +P F SQTK KL S+E+       R
Sbjct: 280 RDYFGKNYEAS---------DIRKSIISAVSIKVMEPVFESQTKTKLGSTEMGEGMPSVR 330

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGVL 405
           S +  F++  L  +L ++   A+ I +K++ A   R         A  RA+  +     L
Sbjct: 331 SYIVDFLSTQLDNFLHKNTDVAEAIQRKIIQAERERKDLSGIRKLARERAKKASLHNKKL 390

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               +   L D  +     S LF+ EGDSA GS  + R    QA+  LRGK LN      
Sbjct: 391 RDCRV--HLPDLKKDRRLDSTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGMSK 448

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR LL+TFF +  
Sbjct: 449 KIVYENEEFNLLQAALNI-----EDSLEDLRYNNIVIATDADVDGMHIRLLLITFFLQFF 503

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P LI  G LYI++ PL+ +   K   Y   E+   + +   S   EI  F    G IS +
Sbjct: 504 PELIKEGHLYILQTPLFRVRDKKQTFYCYSEQERREAITKLSGKPEITRF-KGLGEISPD 562

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
           + + FI + +++D ++ D          EQ +    +  ++  +    +   L   L+F+
Sbjct: 563 EFKFFIGEDIRLDPVMMD-----KTITTEQLLE--FYMGKNTPDRQKFIIENLKVELDFV 615

Query: 646 AEKS 649
            E+S
Sbjct: 616 EEQS 619



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 26/140 (18%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +L  +    F  +  +     +      +  +                + I  +  K
Sbjct: 490 HIRLLLITFFLQFFPELIKE--GHLYILQTPLFRVRDKKQTFYCYSEQERREAITKLSGK 547

Query: 733 GISMQRYKGLGEMNASQ----------LWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782
              + R+KGLGE++  +          L     +P       V +      + L    MG
Sbjct: 548 -PEITRFKGLGEISPDEFKFFIGEDIRL-----DP-------VMMDKTITTEQLLEFYMG 594

Query: 783 DEVEPRREFIQENSLPSALD 802
                R++FI EN L   LD
Sbjct: 595 KNTPDRQKFIIEN-LKVELD 613


>gi|18916411|dbj|BAB85501.1| DNA gyrase subunit B [Rhodopseudomonas sp. B29]
          Length = 303

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 180/305 (59%), Positives = 229/305 (75%), Gaps = 2/305 (0%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE+L GYA  + V LN DG  TV D+GRGIP D+HK EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGYATRVEVILNADGGVTVRDDGRGIPVDIHKGEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LR+ R    + + F +G
Sbjct: 61  SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLILRVWRNDKEHYIEFAHG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL V G A    GTEVTF  S++ F+  ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 DAVAPLEVVGDANGRRGTEVTFYASAETFTHIEYDFATLEHRLRELAFLNSGVYIVLSDM 180

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R    +   M Y+GG+  FV YLDR+KKP++ +PI +    + I+++ A+ WND YHENV
Sbjct: 181 RHAVEKREEMRYEGGVTEFVKYLDRNKKPIVDTPIVMMADLNGITVEAALWWNDTYHENV 240

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+G R+ALTRQ+T Y + +  +KK+K ++ GDDCREG T+VLS+K
Sbjct: 241 LCFTNNIPQRDGGTHLAGFRAALTRQLTGYADNN--AKKEKVALTGDDCREGLTAVLSVK 298

Query: 334 MPDPR 338
           +PDP+
Sbjct: 299 VPDPK 303


>gi|22091046|dbj|BAC06814.1| gyrase B [Yersinia enterocolitica]
 gi|22091048|dbj|BAC06815.1| gyrase B [Yersinia enterocolitica]
 gi|22091050|dbj|BAC06816.1| gyrase B [Yersinia enterocolitica]
          Length = 390

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 234/393 (59%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI
Sbjct: 60  TTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHNIII 390


>gi|262092492|gb|ACY25664.1| DNA gyrase B [Ruegeria sp. HD-28]
          Length = 392

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 243/392 (61%), Positives = 304/392 (77%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS+WL+LR+ R G  +   F  G     L V G  G+ TG
Sbjct: 1   SNSYKVSGGLHGVGVSVVNALSNWLELRVWRNGKEHVARFEGGETVEHLKVVGECGDRTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV FL S+D FS  +++++TL+ RLREL+FLNS V+I L+D+R  E  E  +FY+GG++
Sbjct: 61  TEVRFLASTDTFSNLEYSFETLEKRLRELAFLNSGVRIILVDERPAERLETELFYEGGVK 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLDR K   M  PI I+G RD+I +++AM WND YHE+VL FTNNIPQ+DGGTH++
Sbjct: 121 EFVKYLDRSKSSAMPEPIYIKGERDDIGVEIAMWWNDSYHESVLPFTNNIPQRDGGTHIA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR I +Y + S  +K++K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRGALTRTINNYAQSSGIAKREKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  VN+ L+ W EE+P EAKIIV K+++A++ R+AAR+AR+LTRRK  +D+  L
Sbjct: 241 EVRPAVEGMVNEKLAEWFEENPNEAKIIVGKIIEAALAREAARKARELTRRKTAMDVNYL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
            GKL DCSE+DP K+E+FLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+MLS
Sbjct: 301 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIG L+ ALGTGIG+D F+I KLRYHKI+I
Sbjct: 361 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVI 392


>gi|224533024|ref|ZP_03673630.1| DNA topoisomerase II domain protein [Borrelia burgdorferi WI91-23]
 gi|224512018|gb|EEF82413.1| DNA topoisomerase II domain protein [Borrelia burgdorferi WI91-23]
          Length = 599

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 186/598 (31%), Positives = 276/598 (46%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   ++ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLISIRDYGRGIPLGK-------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  D+            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNDQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSPTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNDSSTQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K   Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 502 YILETPLFRVRNKKITTYCYSEEEKQKAILELKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|295388386|gb|ADG03088.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 232/396 (58%), Positives = 307/396 (77%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K  +++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTLIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++D +  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDVARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH  IIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNTIIMT 394


>gi|255506571|gb|ACU12377.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 389

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 237/392 (60%), Positives = 299/392 (76%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+
Sbjct: 60  TEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA L
Sbjct: 238 EVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+GTLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SQEVGTLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|19909647|dbj|BAB87019.1| DNA gyrase subunit B [Serratia rubidaea]
          Length = 390

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++ +G    PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGQVHEQTYSHGEPQAPLTVVGETE-QTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS   F+   +F YD L  RLRELSFLNS V I L DKRS +       Y+GGI
Sbjct: 60  TTVRFWPSHQTFTNVVEFEYDILAKRLRELSFLNSGVSIRLKDKRSDKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRRNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|22090954|dbj|BAC06768.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 390

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGCSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|19909611|dbj|BAB87001.1| DNA gyrase subunit B [Methylococcus capsulatus]
          Length = 389

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 236/392 (60%), Positives = 294/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  L L I R G  Y   + +G    PL   G A + TG
Sbjct: 1   DNAYKVSGGLHGVGVSVVNALSERLWLEICRGGRRYRQEYRDGEPLAPLAEVGPA-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS  IFS  +F+Y+ L  RLRELSFLNS V+I L DKRS +       ++GGI 
Sbjct: 60  TTVRFKPSPQIFSNIEFHYEILAKRLRELSFLNSGVRIELEDKRSGKN--EVFEFEGGIR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K PL      +Q  RD + +++AM+WND Y ENV C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEHLNKNKTPLFDKVFHLQAERDGVGVEIAMQWNDSYQENVFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E+    KK K   +GDD REG T+VLS+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRTVNQYIEEQGLLKKQKVVTVGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+SVVES + + L+ +L E+P  A+ I  KV+DA+  R+AAR+AR++TRRK  LDIA L
Sbjct: 238 EVKSVVESVMAEKLNDFLLENPSIARTIANKVVDAARAREAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SELF+VEGDSAGGSAKQGR R +QAILPL+GKILNVERARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRRSQAILPLKGKILNVERARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+E+GTLITALG GIG++ ++ +KLRYH+III
Sbjct: 358 SEEVGTLITALGCGIGREEYNPDKLRYHRIII 389


>gi|295388310|gb|ADG03051.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 233/396 (58%), Positives = 308/396 (77%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKAPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLR H IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRCHNIIIMT 394


>gi|22091042|dbj|BAC06812.1| gyrase B [Yersinia enterocolitica]
 gi|22091044|dbj|BAC06813.1| gyrase B [Yersinia enterocolitica]
 gi|22091052|dbj|BAC06817.1| gyrase B [Yersinia enterocolitica]
 gi|22091054|dbj|BAC06818.1| gyrase B [Yersinia enterocolitica]
          Length = 390

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 234/393 (59%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI
Sbjct: 60  TTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHNIII 390


>gi|27530054|dbj|BAC53882.1| DNA gyrase B subunit [Legionella cherrii]
          Length = 281

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 159/284 (55%), Positives = 207/284 (72%), Gaps = 3/284 (1%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           LHHM++EV+DN+IDE+L G+   I VT++ D S TV D+GRGIP D+HKEEG SAAEVIM
Sbjct: 1   LHHMVFEVVDNSIDEALAGHCKEIFVTIHSDESITVKDDGRGIPVDIHKEEGRSAAEVIM 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E  + NG+ D P+ 
Sbjct: 61  TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTVRRHGKIHEQHYRNGVPDAPMA 120

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            TG A   TGT++ F PS++ FS  +F+YD L  RLRELS+LNS V I L D+RS   R+
Sbjct: 121 ETGDAT-TTGTQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLYDERS--QRQ 177

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y+GGI AFV +L+++K  +M +   +   +DNI ++L+M+WND Y E + CFTNNI
Sbjct: 178 DTFHYEGGITAFVEHLNKNKNVIMPAVFSMTAEKDNIVVELSMQWNDSYQETLYCFTNNI 237

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           PQ+DGGTH++G R+ALTR + +Y+E    +KK K S  GDD RE
Sbjct: 238 PQRDGGTHMAGFRAALTRTLNNYIENEGYAKKAKVSPTGDDARE 281


>gi|324039422|dbj|BAJ78464.1| DNA gyrase subunit B [Alcanivorax sp. K3-3]
 gi|324039424|dbj|BAJ78465.1| DNA gyrase subunit B [Alcanivorax sp. K3-4]
          Length = 393

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 236/396 (59%), Positives = 305/396 (77%), Gaps = 4/396 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS  LK+ I+R G ++E  + +G+ D PL V G+  + +
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKMTIRRNGQVHEQVYRHGVPDKPLEVVGNT-DSS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + F PS++ FS   F+YD L  RLRELSFLNS V+I L D+RS E       Y+GG+
Sbjct: 60  GTSIHFRPSAETFSNIKFHYDILAKRLRELSFLNSGVRIHLKDERSGEE--EVFEYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFVSYL+ +K PL Q      +   D I++++AM+WND Y E++ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVSYLNVNKTPLNQVFHFQYEREEDGIAVEVAMQWNDSYQESIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR + +Y+EK    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRGALTRTLNNYMEKEGLLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+  VE  + +    +L E+P EAK I +K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ++DP +SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQQKDPAQSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+GTLITALG GIG+D +++ KLRYH+IIIMT
Sbjct: 358 LSSQEVGTLITALGCGIGRDEYNVEKLRYHRIIIMT 393


>gi|18147149|dbj|BAB83055.1| DNA gyrase subunit B [Marinobacterium georgiense]
          Length = 301

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 166/303 (54%), Positives = 217/303 (71%), Gaps = 3/303 (0%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISA 95
           D  SGLHHM++E++DN IDE+L G+   I V ++ D S TVSDNGRGIPTD+HKEEG+SA
Sbjct: 2   DDGSGLHHMVFELVDNGIDEALAGHCSEIAVIIHPDESVTVSDNGRGIPTDIHKEEGVSA 61

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AEVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALSS LKL I+R G ++E  + +G+ 
Sbjct: 62  AEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSSELKLTIRRAGQVHEQIYHHGVP 121

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
           + PL V G   + TGT V F PS + F+   F YD L  RLRELSFLNS V+I L D+RS
Sbjct: 122 EVPLRVVGET-DLTGTIVRFKPSEETFTNISFQYDILAKRLRELSFLNSGVRIRLKDERS 180

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
              RE    Y+GG+ AFV +L+++K P+ +         + + +++AM+WNDG+ E + C
Sbjct: 181 G--REEVFEYEGGLAAFVEFLNQNKSPINKIFHFNTMHENGVGVEVAMQWNDGFQEGLHC 238

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNIPQ+DGGTHLSG R+ALTR + SY+E    +K  K S  GDD REG  +++S+K+P
Sbjct: 239 FANNIPQRDGGTHLSGFRAALTRCLNSYIESEQLNKNGKVSTSGDDSREGLVAIISVKVP 298

Query: 336 DPR 338
           DP+
Sbjct: 299 DPK 301


>gi|88824755|gb|ABD52423.1| gyrase B [Escherichia coli]
          Length = 392

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 237/395 (60%), Positives = 303/395 (76%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DSSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQ+K+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQSKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 392


>gi|18147179|dbj|BAB83070.1| DNA gyrase subunit B [Alcanivorax sp. Cro-4]
          Length = 393

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 239/396 (60%), Positives = 304/396 (76%), Gaps = 4/396 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G   + +
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+
Sbjct: 60  GTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFVSYL+ +K  L Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVSYLNTNKTALNQVFHFNFEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + SY++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAALTRTLNSYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+GTLITALG GIG+D ++I KLRYH+IIIMT
Sbjct: 358 LSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIMT 393


>gi|58530650|dbj|BAD89279.1| DNA gyrase B [Ferrimonas balearica]
          Length = 390

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 229/393 (58%), Positives = 298/393 (75%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L ++R+G+I+E  +  G    PL   G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PSS IFS   F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI 
Sbjct: 60  TTIRFWPSSQIFSDTTFHYDILAKRLRELSFLNSGVSIRLVDERDAKE--DHYCYEGGIH 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+++K P+ Q        R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVEFLNQNKTPVHQQVFHFTIEREDGIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  + + L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVEQTMGEQLQDFLLENPGDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITA+G GIG+D ++ +K RYH III
Sbjct: 358 SSQEVATLITAMGCGIGRDEYNPDKTRYHNIII 390


>gi|219685298|ref|ZP_03540117.1| DNA topoisomerase II (N- region) domain protein [Borrelia garinii
           Far04]
 gi|219673071|gb|EED30091.1| DNA topoisomerase II (N- region) domain protein [Borrelia garinii
           Far04]
          Length = 599

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 187/598 (31%), Positives = 278/598 (46%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   T+ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLITIRDYGRGIPLGK-------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L         + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGNLLESRE--MESFDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  ++            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNNQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAREV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                +  +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNGSSKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K+  Y   EE  +  +I      E+  F    G IS N+ ++FID
Sbjct: 502 YILETPLFRVRNKKNTIYCYSEEEKKKAMIQLKGGCEVTRF-KGLGEISPNEFKSFID 558


>gi|85541241|gb|ABC70861.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
          Length = 390

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 234/393 (59%), Positives = 300/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+N AILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|290794989|gb|ADD64513.1| DNA gyrase B [Vibrio tasmaniensis]
          Length = 392

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 238/394 (60%), Positives = 305/394 (77%), Gaps = 3/394 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI
Sbjct: 60  GTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG H
Sbjct: 119 QAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 392


>gi|189464618|ref|ZP_03013403.1| hypothetical protein BACINT_00961 [Bacteroides intestinalis DSM
           17393]
 gi|189436892|gb|EDV05877.1| hypothetical protein BACINT_00961 [Bacteroides intestinalis DSM
           17393]
          Length = 623

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 181/652 (27%), Positives = 300/652 (46%), Gaps = 60/652 (9%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYAD 62
           N  Y  D+I+ L  ++ ++ R  MYIG     +    G++ ++ EV+DN+IDE   G   
Sbjct: 12  NVEYTEDNIRHLDDMEHIRVRSGMYIGRLGDGTQNDDGIYVLLKEVMDNSIDEFKMGAGK 71

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +++  +   +V D GRGIP            E + ++L+ GGK++ K++K S GL+G
Sbjct: 72  RIEISIEENLRVSVRDYGRGIPQGK-------LIEAV-SKLNTGGKYDSKAFKKSVGLNG 123

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG+  VNALS+  ++R  REG +    F  GIL +   VT ++  ++GT + F P S +F
Sbjct: 124 VGIKAVNALSNRFEVRSYREGKVRIAIFEKGILQSD--VTENSDEESGTYIFFEPDSTLF 181

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F  + ++  LR  ++LN+ + I    +R             G+E  ++     +  
Sbjct: 182 LNYSFQANFVEMLLRNYTYLNTGLSIIYNGQRIISRH--------GLEDLLNDNMTAQGL 233

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
                I ++G      I++A    + Y E    F N      GGTH S L+  + R I  
Sbjct: 234 YN--IIHLKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSALKEHIARTIKE 287

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-------V 355
           +  K+             D R G  + ++I + +P+F  QTK KL S  +          
Sbjct: 288 FYNKNQEYA---------DIRNGIVAAIAINVEEPQFEGQTKTKLGSPSMSPGGVSVNKY 338

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGVLDI 407
           V  F+   +  +L ++PL A+++++K+ D+   R         A  RA+        L  
Sbjct: 339 VGDFIKTEVDNYLHKNPLVAEVMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRKLRD 398

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                      +++ +   +F+ EGDSA GS  + R    QA+  LRGK LN        
Sbjct: 399 CRYHLNDGKGKDQETESC-IFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKKV 457

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   L  AL    G     I  LRY+K+I  TDADVDG HIR LL+TFF +  P 
Sbjct: 458 VYENEEFNLLQAALNIEDG-----IEGLRYNKVIAATDADVDGMHIRLLLITFFLQFFPD 512

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G +YI++ PL+ +   K   Y   EE  +  +     + EI  F    G IS ++ 
Sbjct: 513 LIKKGHVYILQTPLFRVRNKKKTLYCYTEEERQKAIAELGPNPEITRF-KGLGEISPDEF 571

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           R+FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 572 RHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIINNLVIEEDLA 622


>gi|33590324|gb|AAQ22702.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. akhurstii]
          Length = 389

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 230/392 (58%), Positives = 300/392 (76%), Gaps = 4/392 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GG
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           LSSQE+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLRYHSI 389


>gi|320537889|ref|ZP_08037803.1| DNA topoisomerase IV subunit B [Treponema phagedenis F0421]
 gi|320145263|gb|EFW36965.1| DNA topoisomerase IV subunit B [Treponema phagedenis F0421]
          Length = 604

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 175/641 (27%), Positives = 277/641 (43%), Gaps = 48/641 (7%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
             ++YD   I+ L  L+ ++ R  MYIG     S    G++ ++ EV+DN+IDE + G  
Sbjct: 3   AKNTYDESKIKTLSSLEHIRLRTGMYIGRLGNGSNPDDGIYILLKEVIDNSIDEFIMGNG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           + I V L+      V D GRGIP            E + + ++ G K+N + ++ S GL+
Sbjct: 63  NRIDVQLDG-NKVIVRDYGRGIPLGK-------VVECV-SVINTGAKYNDEVFQFSVGLN 113

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG   VNALS+  ++   R+G   E  F  G L +        G   GT V F+P   I
Sbjct: 114 GVGTKAVNALSTHFRVVSIRDGKFSEAVFEQGSLKSQKQGATKPGIKNGTLVEFVPDEQI 173

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F   +FN D ++ R+   ++LNS + ++                + G+   ++       
Sbjct: 174 FGQYEFNRDFIEKRMWNYAYLNSGLLLTFNG--------AQFKSENGLLDLLNANVSGST 225

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
                    + SR    ++ A    + Y E    F N     DGGTHLS  +  L + I 
Sbjct: 226 LY--DVGYFKESR----LEFAFSHTNNYGETYFSFVNGQYTSDGGTHLSAFKEGLLKGIN 279

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+            +D REG  + +++K+  P F SQTK KL ++EVR+ + +   
Sbjct: 280 EYFRKN---------YKSEDVREGTCAAVAVKIQAPIFESQTKNKLGNTEVRTWIVNDTK 330

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER- 420
             +  WL+++   A+ + +K++           A     R     IA    KL DC    
Sbjct: 331 AAVVEWLQKNAEAARKMEEKIVANER-LRTELNAVKKEARAAAKKIAIKIPKLKDCKFHL 389

Query: 421 ----DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
                  ++ +F+ EGDSA GS    R    QAI  LRGK  N++  +   +  + E+  
Sbjct: 390 GDKLYGDETMIFITEGDSASGSMVSSRDVMVQAIFSLRGKPENMQGKKRAAIYKNAELYN 449

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           ++ ALG        DI  LRY KIII TDAD DG HIR LLLTFF      LI +G ++I
Sbjct: 450 MMMALGI-----ENDIEGLRYSKIIIATDADNDGFHIRNLLLTFFLTYFEELITSGRIFI 504

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           ++ PL+ +   K   Y   E+  +     Q  +          G IS ++   FI   +K
Sbjct: 505 LETPLFRVRSKKETIYCYSEKERD-IAFKQLGAGAEITRFKGLGEISPSEFGQFIGKDIK 563

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +  +         +        +     E   +  ++    
Sbjct: 564 LLPVTVQTLKKVPQILEFYMGKNTPQRKEFIMKNLLAEIDA 604



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 31/206 (15%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +  + QA+ S     E+ Q    +   K A   N +     ++    +  S I++     
Sbjct: 416 RDVMVQAIFSLRGKPENMQGKKRAAIYKNAELYNMMMALGIENDIEGLRYSKIIIA-TDA 474

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
                 +      F      + I S RI      +  +    + I              I
Sbjct: 475 DNDGFHIRNLLLTFFLTYFEELITSGRIFILETPLFRVRSKKETIYCYSEKE-----RDI 529

Query: 730 GRK----GISMQRYKGLGEMNASQ---------LWETTLNPDTRSLLRVKITDASQADDL 776
             K    G  + R+KGLGE++ S+                     LL V +    +   +
Sbjct: 530 AFKQLGAGAEITRFKGLGEISPSEFGQFIGKDI-----------KLLPVTVQTLKKVPQI 578

Query: 777 FSRLMGDEVEPRREFIQENSLPSALD 802
               MG     R+EFI +N L + +D
Sbjct: 579 LEFYMGKNTPQRKEFIMKN-LLAEID 603


>gi|290794991|gb|ADD64514.1| DNA gyrase B [Vibrio tasmaniensis]
          Length = 393

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 238/394 (60%), Positives = 305/394 (77%), Gaps = 3/394 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI
Sbjct: 60  GTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG H
Sbjct: 119 QAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 392


>gi|226321134|ref|ZP_03796675.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 29805]
 gi|226233426|gb|EEH32166.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 29805]
          Length = 599

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 186/598 (31%), Positives = 277/598 (46%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   ++ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLISIRDYGRGIPLGK-------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  D+            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNDQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                +  +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNDSSKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K   Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 502 YILETPLFRVRNKKITIYCYSEEEKQKAILELKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|51921646|gb|AAU13949.1| gyrase B subunit [Vibrio vulnificus]
          Length = 391

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 233/393 (59%), Positives = 306/393 (77%), Gaps = 3/393 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  + L I R G+ +  ++ +G+ D PL + G     TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTE-KTGTTVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L
Sbjct: 60  PSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFMYEGGIQAFVTHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        R++ I++++AM+WNDG+ EN+  FTNNIPQ+DGGTHL+G R+A
Sbjct: 119 NRNKTPIHEKVFHFNAEREDGIAVEVAMQWNDGFQENIYWFTNNIPQRDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT+++LV SEV+S 
Sbjct: 179 LTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTQDQLVLSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VESF+ D L+ +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 239 VESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 299 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 358

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           TLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 391


>gi|211927051|dbj|BAG82778.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 390

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 305/393 (77%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG +++ ++++G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGETE-LTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TQVRFWPSHETFTNVVEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|58530648|dbj|BAD89278.1| DNA gyrase B [Ferrimonas balearica DSM 9799]
          Length = 390

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 229/393 (58%), Positives = 298/393 (75%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L ++R+G+I+E  +  G    PL   G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PSS IFS   F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI 
Sbjct: 60  TTIRFWPSSQIFSDTTFHYDILAKRLRELSFLNSGVSIRLVDERDAKE--DHYCYEGGIH 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+++K P+ Q        R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVEFLNQNKTPVHQQVFHFXIEREDGIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  + + L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVEQTMGEQLQDFLLENPGDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITA+G GIG+D ++ +K RYH III
Sbjct: 358 SSQEVATLITAMGCGIGRDEYNPDKTRYHNIII 390


>gi|218131607|ref|ZP_03460411.1| hypothetical protein BACEGG_03227 [Bacteroides eggerthii DSM 20697]
 gi|217985910|gb|EEC52249.1| hypothetical protein BACEGG_03227 [Bacteroides eggerthii DSM 20697]
          Length = 640

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 176/653 (26%), Positives = 293/653 (44%), Gaps = 60/653 (9%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
               Y+ D+I+ L  ++ ++ R  MYIG     S    G++ ++ EV+DN+IDE   G  
Sbjct: 28  NEVEYNEDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG 87

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
             I V +  +   +V D GRGIP            E + ++L+ GGK++ K++K S GL+
Sbjct: 88  KRIEVNIEDNLRVSVRDYGRGIPQGK-------LIEAV-SKLNTGGKYDSKAFKKSVGLN 139

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+  VNALSS  ++R  R+G +  + F  G+L +   V   +  + GT + F P + +
Sbjct: 140 GVGIKAVNALSSRFEVRSYRDGKVRTVIFEKGVLQSD--VMEDSTEENGTYIFFEPDNTL 197

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F    ++  LR  ++LN+ +      +R             G+E  +        
Sbjct: 198 FLNYSFQNQFVETLLRNYTYLNTGLTFIYNGQRIISRH--------GLEDLLKDNMT--S 247

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
             +   + ++G      I++A    + Y E    F N      GGTH + L+  + R I 
Sbjct: 248 EGLYDIVHLKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTALKEHIARTIK 303

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS-------SEVRS 354
            +  K+             D R G  + ++I + +P F SQTK KL S         V  
Sbjct: 304 EFYNKNQDYA---------DIRNGLVAAIAIDVEEPMFESQTKTKLGSNNMWPDGPTVNK 354

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGVLD 406
            V  F+   +  +L ++PL A+++++K+ D+   R         A  RA+        L 
Sbjct: 355 YVGDFIKTEVDNFLHKNPLVAEVMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRKLR 414

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
                       E++     +F+ EGDSA GS  + R    QA+  LRGK LN       
Sbjct: 415 DCRFHLSDGKGKEQETDSC-IFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKK 473

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR L++TFF +  P
Sbjct: 474 VVYENEEFNLLQAALNIEDG-----IEGLRYNKVIVATDADVDGMHIRLLIITFFLQFFP 528

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI  G +YI++ PL+ +   K   Y   E+     +     + EI  F    G IS ++
Sbjct: 529 DLIKKGHVYILQTPLFRVRNKKKTNYCYTEDERIKAIEELGPNPEITRF-KGLGEISPDE 587

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
            ++FI   ++++++      +  K  +E  +       ++    N+ +   LA
Sbjct: 588 FKHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 639


>gi|126035302|gb|ABN72404.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 390

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GG
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A
Sbjct: 238 SSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSSQE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLRYHSII 390


>gi|260591900|ref|ZP_05857358.1| putative DNA topoisomerase IV, B subunit [Prevotella veroralis
           F0319]
 gi|260536184|gb|EEX18801.1| putative DNA topoisomerase IV, B subunit [Prevotella veroralis
           F0319]
          Length = 647

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 152/566 (26%), Positives = 255/566 (45%), Gaps = 57/566 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M + ++   Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE 
Sbjct: 1   MDELVKPVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDEF 60

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
                D I + +  +   +V D GRGIP            E + + L+ GGK++ K++K 
Sbjct: 61  KMNAGDRIEIDIEDNLRVSVRDYGRGIPQGK-------LVEAV-SVLNTGGKYDSKAFKK 112

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVGV  VNALSS  +++  REG +  +SF  G L      T    +++GT + F 
Sbjct: 113 SVGLNGVGVKAVNALSSHFEVKSFREGKVRALSFEKGNLQGD--KTKKTNDESGTYIYFE 170

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P + +F    F+ D ++  LR  ++LN+ + I    +R             G++  ++  
Sbjct: 171 PDNTLFKNYSFHDDIVEEMLRNYTYLNTGLTIMYNGRRILSRH--------GLKDLLTDN 222

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                  +   + ++G      I++A    + Y E    F N      GGTH +  +  +
Sbjct: 223 MTG--DPLYPIVHMKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAFKEHI 276

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-- 354
            + I  +  K              D R G  + +++ + +P F SQTK KL S+ +    
Sbjct: 277 AKTIKEFFGKYEY----------GDIRNGLVAAIAVNVEEPVFESQTKIKLGSTLMAPEG 326

Query: 355 ---------VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
                     +++ V++ L    E+     +  +K+            +      +K  L
Sbjct: 327 ETINKYVGDFIKTNVDNYLHIHKEDFTDILESKIKETERERKAMAGVTKLARERAKKANL 386

Query: 406 DI---ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                        D      + S +F+ EGDSA GS  + R    QA+  LRGK LN   
Sbjct: 387 HNRKLRDCRIHFCDVKNDRKEDSSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFG 446

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
                +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF 
Sbjct: 447 LTKKVVYENEEFNLLQAALDIEDG-----LDSLRYNKVIVATDADVDGMHIRLLIITFFL 501

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGK 548
           +  P LI  G +Y+++ PL+ +   +
Sbjct: 502 QFFPELIKKGHVYVLQTPLFRVRNRR 527


>gi|22090910|dbj|BAC06746.1| gyrase B [Salmonella enterica subsp. enterica serovar Chester]
          Length = 390

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V  ++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGNIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|126035210|gb|ABN72358.1| gyrase B subunit [Escherichia coli]
          Length = 391

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 237/394 (60%), Positives = 302/394 (76%), Gaps = 4/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 391


>gi|216264324|ref|ZP_03436316.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 156a]
 gi|224533936|ref|ZP_03674521.1| DNA topoisomerase II domain protein [Borrelia burgdorferi CA-11.2a]
 gi|215980797|gb|EEC21604.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 156a]
 gi|224512939|gb|EEF83305.1| DNA topoisomerase II domain protein [Borrelia burgdorferi CA-11.2a]
 gi|312148155|gb|ADQ30814.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi JD1]
          Length = 599

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 186/598 (31%), Positives = 276/598 (46%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   ++ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLISIRDYGRGIPLGK-------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  D+            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNDQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNDSSTQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K   Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 502 YILETPLFRVRNKKITTYCYSEEEKQKAILELKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|147917479|gb|ABQ52592.1| gyrase B subunit [Vibrio alginolyticus]
 gi|147917483|gb|ABQ52594.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 390

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 232/392 (59%), Positives = 306/392 (78%), Gaps = 3/392 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           ++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+A
Sbjct: 60  QIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 FVDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A L
Sbjct: 239 EVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 299 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 SQEVATLITALGCGIGRDEYNPDKLRYHNIII 390


>gi|7107361|gb|AAF36388.1|AF221694_1 GyrB [Yersinia pestis]
          Length = 226

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 135/229 (58%), Positives = 168/229 (73%), Gaps = 4/229 (1%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSC 74
           I++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S 
Sbjct: 1   IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEILVTIHADNSV 60

Query: 75  TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW 134
           +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  
Sbjct: 61  SVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEK 120

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQ 193
           L+L I+REG ++E ++  G+   PL V G     TGT V F PS   F +  +F Y+ L 
Sbjct: 121 LELVIRREGKVHEQTYKMGVPQAPLKVVGETE-QTGTTVRFWPSFQTFTNNTEFQYEILA 179

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P
Sbjct: 180 KRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNP 226


>gi|15594382|ref|NP_212170.1| DNA topoisomerase IV subunit B [Borrelia burgdorferi B31]
 gi|195941776|ref|ZP_03087158.1| DNA topoisomerase IV subunit B [Borrelia burgdorferi 80a]
 gi|218249859|ref|YP_002374570.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi ZS7]
 gi|223889201|ref|ZP_03623790.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 64b]
 gi|225549309|ref|ZP_03770282.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 94a]
 gi|226322049|ref|ZP_03797574.1| DNA topoisomerase II domain protein [Borrelia burgdorferi Bol26]
 gi|3914288|sp|Q59189|PARE_BORBU RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|2687909|gb|AAC66418.1| DNA topoisomerase IV (parE) [Borrelia burgdorferi B31]
 gi|218165047|gb|ACK75108.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi ZS7]
 gi|223885450|gb|EEF56551.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 64b]
 gi|225370167|gb|EEG99607.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 94a]
 gi|226232639|gb|EEH31393.1| DNA topoisomerase II domain protein [Borrelia burgdorferi Bol26]
          Length = 599

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 186/598 (31%), Positives = 277/598 (46%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   ++ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLISIRDYGRGIPLGK-------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  D+            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNDQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                +  +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNDSSKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K   Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 502 YILETPLFRVRNKKITTYCYSEEEKQKAILELKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|157073797|dbj|BAF79897.1| gyrase B [Methylobacterium nodulans]
          Length = 392

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 263/392 (67%), Positives = 317/392 (80%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+WL+LRI R G+ + M F +G    PL V G AG   G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTWLRLRIWRGGHEHAMEFRHGDAVAPLAVVGPAGEKRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS + FS+ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+E
Sbjct: 61  TEVTFLPSPETFSMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELVYEGGVE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR K PL+  P+ ++  RD I +++A+ WND YHE VL FTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRTKTPLVAKPVVVRAERDGIGVEVALWWNDSYHETVLPFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQIT Y E S  +KK+K ++ GDDCREG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQITGYAESSGIAKKEKVTLSGDDCREGLTAIISVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVE+ +N+GLS WLEEHP EAK IV KV +A+  R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVENVLNEGLSNWLEEHPSEAKTIVGKVAEAAAAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGTGIG++ F+ +KLRYH+III
Sbjct: 361 SQEIGTLITALGTGIGREEFNPDKLRYHRIII 392


>gi|227121277|gb|ACP19330.1| GyrB [Leptospirillum ferriphilum]
          Length = 405

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 197/410 (48%), Positives = 273/410 (66%), Gaps = 7/410 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+   YKVSGGLHGVGVS+VNALS  L L I + G I+  ++  G  D PL 
Sbjct: 1   TVLHAGGKFDNNLYKVSGGLHGVGVSMVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLA 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G      GT + F P   I     F++DTL HR REL+FLN  + I L D+ +   RE
Sbjct: 61  VFGETT-QRGTIIRFWPDMTIMETDQFSFDTLAHRFRELAFLNPVLTIHLKDEET--LRE 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNN 279
            T  ++GG+++FVS+L+ +KK L       +   D    ++A ++ +   +E VL F NN
Sbjct: 118 ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLGFANN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I  ++GGTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P P+F
Sbjct: 178 IHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIPGPQF 235

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL SS V   +ESF+++ L    EE PL AK I +K +  +  R+AAR+A+DL 
Sbjct: 236 EGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLA 295

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILN
Sbjct: 296 KRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILN 355

Query: 460 VERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           VE++R  +K +++ E+  LITA+G G+G++ F   +LRYHKIIIMTDADV
Sbjct: 356 VEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKELRYHKIIIMTDADV 405


>gi|312149598|gb|ADQ29669.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi N40]
          Length = 599

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 186/598 (31%), Positives = 276/598 (46%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   ++ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLISIRDYGRGIPLGK-------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  D+            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNDQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC--- 417
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 418 ---SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNDRSTQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K   Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 502 YILETPLFRVRNKKITTYCYSEEEKQKAILELKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|221217488|ref|ZP_03588959.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 72a]
 gi|221192766|gb|EEE18982.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 72a]
          Length = 599

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 186/598 (31%), Positives = 276/598 (46%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   ++ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLISIRDYGRGIPLGK-------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  D+            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNDQ--------IFESKNGLLDFLNLEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNDSSTQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K   Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 502 YILETPLFRVRNKKITTYCYSEEEKQKAILELKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|219684880|ref|ZP_03539822.1| DNA topoisomerase II (N- region) domain protein [Borrelia garinii
           PBr]
 gi|219671825|gb|EED28880.1| DNA topoisomerase II (N- region) domain protein [Borrelia garinii
           PBr]
          Length = 599

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 187/598 (31%), Positives = 278/598 (46%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   T+ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLITIRDYGRGIPLGK-------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L         + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGNLLESRE--MESSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  ++            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNNQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAREV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                +  +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNGSNKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K+  Y   EE  +  +I      E+  F    G IS N+ ++FID
Sbjct: 502 YILETPLFRVRNKKNTIYCYSEEEKKKAMIQLKGGCEVTRF-KGLGEISPNEFKSFID 558


>gi|22090928|dbj|BAC06755.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
 gi|22090930|dbj|BAC06756.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
          Length = 390

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AA RAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAGRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|22090912|dbj|BAC06747.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|22090914|dbj|BAC06748.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|22090916|dbj|BAC06749.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|22090918|dbj|BAC06750.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|22090920|dbj|BAC06751.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|22090922|dbj|BAC06752.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|22090924|dbj|BAC06753.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|22090926|dbj|BAC06754.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|22090938|dbj|BAC06760.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|22090940|dbj|BAC06761.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson]
 gi|22090942|dbj|BAC06762.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090944|dbj|BAC06763.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090946|dbj|BAC06764.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090948|dbj|BAC06765.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090950|dbj|BAC06766.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090952|dbj|BAC06767.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090956|dbj|BAC06769.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|22090958|dbj|BAC06770.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 390

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|225552290|ref|ZP_03773230.1| DNA topoisomerase II domain protein [Borrelia sp. SV1]
 gi|225371288|gb|EEH00718.1| DNA topoisomerase II domain protein [Borrelia sp. SV1]
          Length = 599

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 185/598 (30%), Positives = 275/598 (45%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   ++ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLISIRDYGRGIPLGK-------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL   +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADLE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  D+            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNDQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNDSSAQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K   Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 502 YILETPLFRVRNKKITTYCYSEEEKQKAILELKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|324039426|dbj|BAJ78466.1| DNA gyrase subunit B [Alcanivorax sp. Ksm-2]
 gi|324039452|dbj|BAJ78479.1| DNA gyrase subunit B [Alcanivorax sp. Wf-1]
 gi|324039454|dbj|BAJ78480.1| DNA gyrase subunit B [Alcanivorax sp. Wf-2]
 gi|324039458|dbj|BAJ78482.1| DNA gyrase subunit B [Alcanivorax sp. Wf-4]
          Length = 393

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 239/396 (60%), Positives = 306/396 (77%), Gaps = 4/396 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+  NPL V G   + +
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYHHGVPANPLEVVG-TTDSS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+
Sbjct: 60  GTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFVSYL+ +K  L Q      +   D I++++AM+WND Y E++ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVSYLNTNKTALNQVFHFNYEREEDGIAVEVAMQWNDSYQESIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + SY++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAALTRTLNSYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKSAVEQTMGDLFQDYLLENPTEARSIVQKIIDAARARDAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+GTLITALG GIG+D ++I+KLRYH+IIIMT
Sbjct: 358 LSSQEVGTLITALGCGIGRDEYNIDKLRYHRIIIMT 393


>gi|110612687|gb|ABG78306.1| GyrB [uncultured bacterium]
          Length = 402

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 233/403 (57%), Positives = 299/403 (74%), Gaps = 1/403 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GG F+  +YKVSGGLHGVGVSVVNALS  L L + R+G ++   +  G     +     A
Sbjct: 1   GGNFDDNAYKVSGGLHGVGVSVVNALSEHLWLEVHRQGRMHRQEYRMGEPLFAMRDV-EA 59

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT V FLPS+++F++ +F+YD L  RLREL+FLNS ++I L D R  + RE    Y
Sbjct: 60  SVRRGTTVRFLPSTEVFAITEFHYDILAKRLRELAFLNSGLRIELADLRPGQEREDVFAY 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI AFV +L   K PL    I +    D I +++A++W DGY E V C+TNNIPQ+DG
Sbjct: 120 EGGICAFVQHLVELKTPLHPKVISLNYRADGIEVEVALQWTDGYQEGVYCYTNNIPQRDG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR +T Y+E+   +K  K  + GDD REG  +VLS+K+PDP+FSSQTKE
Sbjct: 180 GTHLTGFRAALTRTLTQYIERENLAKNAKVQLSGDDMREGLIAVLSVKVPDPKFSSQTKE 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV++VVE  V   L  +L E+P EA+ I  KV+DA+  R+AAR+AR++TRRKG L
Sbjct: 240 KLVSSEVKTVVEQGVGQTLEEFLLENPGEARTIAGKVVDAARAREAARKAREMTRRKGAL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA LPGKLADC E+DP  SELFLVEGDSAGGSAKQGR+R+NQA+LPL+GKILNVE+ARF
Sbjct: 300 DIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKNQAVLPLKGKILNVEKARF 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           D+ML+S E+GTLITAL  GIG+D ++ +K+RYH+IIIMTDADV
Sbjct: 360 DRMLASAEVGTLITALSCGIGKDEYNPDKIRYHRIIIMTDADV 402


>gi|156901530|gb|ABU96755.1| GyrB [Salmonella enterica subsp. houtenae]
 gi|156901532|gb|ABU96756.1| GyrB [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|156901534|gb|ABU96757.1| GyrB [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|156901536|gb|ABU96758.1| GyrB [Salmonella enterica subsp. salamae]
 gi|156901544|gb|ABU96762.1| GyrB [Salmonella enterica subsp. indica]
          Length = 391

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|58530656|dbj|BAD89282.1| DNA gyrase B [Ferrimonas sp. A3B-57-2]
          Length = 390

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 231/393 (58%), Positives = 299/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R+G+I+E ++  G    PL V G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLDLTVRRQGHIHEQTYHLGDPAAPLKVVGDSE-KTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS  IFS   F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI 
Sbjct: 60  TMIRFWPSPQIFSDTTFHYDILAKRLRELSFLNSGVSIRLVDERDGKE--DHFCYEGGIH 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+++K P+ Q        R++ I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVEFLNQNKTPVNQQVFHFTTEREDGIGVEVSMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + SY++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRTLNSYMDKEGYSKKAKTSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVEQAMGEKLQEFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITA+G GIG+D +D +K RYH III
Sbjct: 358 SSQEVATLITAMGCGIGRDEYDPDKTRYHNIII 390


>gi|295388288|gb|ADG03040.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 234/396 (59%), Positives = 310/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLH VGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHSVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++++       R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIENIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|239735443|dbj|BAH70488.1| gyrase B subunit [Cardinium endosymbiont of Tetranychus
           pueraricola]
          Length = 462

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 222/460 (48%), Positives = 305/460 (66%), Gaps = 9/460 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVS V+ALS  L++ + R G IY+     GI   P+   GS     GT V F P 
Sbjct: 1   GLHGVGVSCVDALSPHLEVTVYRNGKIYKQEDAQGIPRYPVKEVGSTA-LRGTTVHFTPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234
           + IF+   +N  T+ +RL+EL++LN  + + L D R  +    P + T   +GG+  FVS
Sbjct: 60  NSIFTTTVYNLHTIVNRLQELAYLNVGLTMQLEDHRERDEQNSPFKQTFHSEGGLLEFVS 119

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +LD  K  +M +PI ++G ++N+ + +AM +N GY E V+ + NNI   +GG H++G + 
Sbjct: 120 HLDSTKVSIMPAPILVEGEKNNVIVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFKR 179

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY +KS   +K K  +IGDD REG T+V+S+K+ +P+F  QTK KL ++EV+ 
Sbjct: 180 ALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQG 239

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES V + L  +LEEHP EAK+I+ KV+ A+  R AAR+AR++ +RK VL   SLPGKL
Sbjct: 240 AVESCVAEVLHYYLEEHPKEAKLIINKVIVAAQARQAARKAREMVQRKNVLMSNSLPGKL 299

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCSERDP   ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  K+  ++++
Sbjct: 300 ADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQTYKIYDNEQV 359

Query: 475 GTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +ITALG  +G      +  ++KLRYHKI+IMTDADVDG+HIRTL+LTFFFR M  +I 
Sbjct: 360 RNMITALGVSMGTDGTDQATHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYMREVIE 419

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
            G LYI  PPLY + R K   Y   E   E ++   SL +
Sbjct: 420 KGHLYIASPPLYLVKRDKEEHYCWTELEKEKWVKELSLKD 459


>gi|225549741|ref|ZP_03770706.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 118a]
 gi|225369701|gb|EEG99149.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 118a]
          Length = 599

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 186/598 (31%), Positives = 276/598 (46%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +   ++ D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLISIRDYGRGIPLGK-------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  D+            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNDQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLIATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNDSSTQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K   Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 502 YILETPLFRVRNKKITTYCYSEEEKQKAILELKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|301477622|dbj|BAJ12096.1| DNA gyrase subunit beta [Pandoraea pnomenusa]
          Length = 425

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 237/418 (56%), Positives = 307/418 (73%), Gaps = 15/418 (3%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGSAGNDTGTE 172
            S VNALSS+LKL ++R+G  + M F  G+              +PL V G   +  GTE
Sbjct: 11  SSCVNALSSYLKLTVRRDGKKHFMEFHRGVPQNREIEVVDGVETSPLKVLGDT-DKRGTE 69

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V FL    IF   +F+YD L  R+RELSFLN+ V+I L D R+ +       + GG++ F
Sbjct: 70  VHFLADETIFGNVEFHYDILAKRMRELSFLNNGVRIRLTDLRTGKE--DDFAFGGGVKGF 127

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y+++ K  L  +   + G RD I +++AM+WND Y+E VLCFTNNIPQ+DGGTHL+GL
Sbjct: 128 VEYINKSKTVLHPTVFHVMGERDGIGVEVAMQWNDSYNETVLCFTNNIPQRDGGTHLTGL 187

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR I  Y+ +S  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSEV
Sbjct: 188 RAAMTRVINKYIVESEMAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEV 247

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+ VE +V   L  +L+E P +AKII  K+++A+  RDAAR+AR++TRRKGVLD   LPG
Sbjct: 248 RAPVEEYVAKALEDFLQETPNDAKIICSKIVEAARARDAARKAREMTRRKGVLDGVGLPG 307

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFDK++SS+
Sbjct: 308 KLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDKLISSE 367

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           +I TLITALG GIG+D ++I+KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQ+P LI 
Sbjct: 368 QIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQVPELIE 425


>gi|85541247|gb|ABC70864.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Anatum]
          Length = 392

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 234/394 (59%), Positives = 301/394 (76%), Gaps = 4/394 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GG
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A
Sbjct: 238 SSEVKSAVEQQMNELLSEYLLENPFDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLI ALG GIG+D ++ +KLRYH III
Sbjct: 358 LSSQEVATLIPALGCGIGRDEYNPDKLRYHSIII 391


>gi|18147183|dbj|BAB83072.1| DNA gyrase subunit B [Alcanivorax sp. Can-1]
          Length = 393

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 241/396 (60%), Positives = 305/396 (77%), Gaps = 4/396 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G   + +
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+
Sbjct: 60  GTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFVSYL+ +K PL Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + SY++K    KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+GTLITALG GIG+D ++I KLRYH+IIIMT
Sbjct: 358 LSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIMT 393


>gi|58530654|dbj|BAD89281.1| DNA gyrase B [Ferrimonas sp. A3B-58]
          Length = 390

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 226/393 (57%), Positives = 300/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L ++R+G+++E ++  G    PL   G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTVRRQGHVHEQTYHLGDPAAPLKAVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  +       Y+GGI+
Sbjct: 60  TTIRFWPSPQIFSDTLFHYEILAKRLRELSFLNSGVSIRLVDERDGKE--DHYSYEGGIQ 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+++K P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVEFLNQNKTPVHQQVFHFTTEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  + + L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVEQAMGEQLQDFLLENPGDAKTVVNKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITA+G GIG+D ++ +K RYH III
Sbjct: 358 SSQEVATLITAMGCGIGRDEYNPDKTRYHNIII 390


>gi|303237810|ref|ZP_07324368.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella disiens FB035-09AN]
 gi|302482035|gb|EFL45072.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella disiens FB035-09AN]
          Length = 648

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 155/567 (27%), Positives = 259/567 (45%), Gaps = 58/567 (10%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDE 55
           M++N + S +Y  ++I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE
Sbjct: 1   MAENNKKSVAYTDENIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
                 D I + +  +   +V D GRGIP            E + + L+ GGK++ K++K
Sbjct: 61  FKMNEGDRIEIDIEDNLRVSVRDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFK 112

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            S GL+GVGV  VNALSS  +++  REG + E+SF  G   +    T  + ++ GT + F
Sbjct: 113 KSVGLNGVGVKAVNALSSKFEVKSFREGKVRELSFEQGNKKSD--NTKKSTDEQGTYIYF 170

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P + +F    F+ D +   LR  ++LN+ + I     R             G++  ++ 
Sbjct: 171 EPDNTLFKNYSFHDDIVVTMLRNYTYLNTGLTIMYNGHRIASRH--------GLQDLLTD 222

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                   +   + ++G      I++A    + Y E    F N      GGTH S  +  
Sbjct: 223 NMTV--DPLYPIVHMKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSAFKEH 276

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL-------- 347
           + R I  +  K              D R G  + +++ + +P F SQTK KL        
Sbjct: 277 IARTIKEFFGKYEY----------GDIRNGMVAAIAVNVEEPVFESQTKIKLGSTLMAPD 326

Query: 348 ---VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
              ++  V   +++ +++ L    EE     +  +K+            +      +K  
Sbjct: 327 GETINKFVGDFIKTNIDNYLHIHKEEFTDILENKIKETERERKAMAGVTKLARERAKKAN 386

Query: 405 LDI---ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           L            +D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN  
Sbjct: 387 LHNRKLRDCRIHFSDAKNDLKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNCF 446

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
                 +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF
Sbjct: 447 GLTKKVVYENEEFNLLQAALDIEDG-----LDTLRYNKVIVATDADVDGMHIRLLIITFF 501

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGK 548
            +  P LI  G +Y+++ PL+ +   +
Sbjct: 502 LQFFPELIKKGHVYVLQTPLFRVRNKR 528


>gi|148470228|gb|ABQ66061.1| gyrase b [uncultured bacterium]
          Length = 417

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 196/415 (47%), Positives = 281/415 (67%), Gaps = 7/415 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++G  +   +  G  D+PL 
Sbjct: 4   TVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPDSPLA 63

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           VTG + + TGT + F P   I     F+YD L HR RELSFLN S+ I+L ++ +   RE
Sbjct: 64  VTG-SSDRTGTAIRFYPDLTIMETDQFSYDVLAHRFRELSFLNPSLTITLAEEET--LRE 120

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNN 279
                +GGI +F+S+++ +K+ L +     +   +  + +++ ++ D    E +L + NN
Sbjct: 121 SVFHDEGGIRSFLSFVNENKRVLHEPLFFRKVLENGATFEISFQYQDTTDAETLLSYVNN 180

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IP ++GG+H+ G RSALT+ +  ++     +K ++  V G+D REG ++++SIK+P+P+F
Sbjct: 181 IPTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEE--VKGEDIREGLSAIVSIKIPNPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL SS V   +E+F+++ L    E+    A+ I  K + ++  R+AAR+AR+LT
Sbjct: 239 EGQTKAKLGSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQAREAARKARELT 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILN
Sbjct: 299 KRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILN 358

Query: 460 VERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           VE+ +  +K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HI
Sbjct: 359 VEKTKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVDGSHI 413


>gi|198042680|gb|ACH81165.1| GyrB [Pseudoalteromonas luteoviolacea]
          Length = 379

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 230/381 (60%), Positives = 298/381 (78%), Gaps = 3/381 (0%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G +++  +  G+ D PL 
Sbjct: 1   TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGQVHQQKYTMGVPDAPLA 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G A   TGTE+ F PS + FS  +F+YD L  RLRELSFLNS V I L D+R  E ++
Sbjct: 61  VIGEAE-TTGTELRFWPSPETFSDINFHYDILAKRLRELSFLNSGVSIILTDER-EENKQ 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNN 279
               Y+GGI+AFV YL+R K P+ QS       R++ IS++++M+WNDG+ EN+ CFTNN
Sbjct: 119 DHFKYEGGIQAFVEYLNRKKTPVHQSVFHFTSEREDGISVEVSMQWNDGFQENIYCFTNN 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTH +G R+ALTR + +Y+EK   +KK+K S  GDD REG T+V+S+K+PDP+F
Sbjct: 179 IPQRDGGTHFAGFRAALTRTLNTYMEKEGFNKKNKTSATGDDAREGLTAVVSVKVPDPKF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEV+  VE  + + L+ +L E+P +AK +V K++DA+  R+AAR+AR++T
Sbjct: 239 SSQTKDKLVSSEVKGAVEQAMAEKLNEFLLENPQDAKTVVNKIVDAARAREAARKAREMT 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKGV+D+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILN
Sbjct: 299 RRKGVMDLAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 358

Query: 460 VERARFDKMLSSQEIGTLITA 480
           VE+ARFDKMLSSQE+ TLITA
Sbjct: 359 VEKARFDKMLSSQEVATLITA 379


>gi|156901538|gb|ABU96759.1| GyrB [Salmonella bongori]
          Length = 391

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|23978251|dbj|BAC21117.1| DNA gyrase B subunit [Chlorogloeopsis sp. PCC 6718]
          Length = 396

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 185/393 (47%), Positives = 260/393 (66%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   + V LN DGS TV+D+GRGIPTD+H + G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTDIHPQTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVG+SVVNALS W+++++ R+  +Y   +  G+  
Sbjct: 62  ETVLTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVKVWRDKKVYAQRYERGVPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L       N TGT V F P   IF +  +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELTAKPYKENRTGTSVNFKPDPQIFTTDTEFDYITLASRLRELAYLNAGVKITFTDYRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S +P+  T  YKGGI  +++Y++  K+PL +  I +QG R+N+ ++++++W  D Y
Sbjct: 182 QLLKSDQPKVETYEYKGGICEYIAYMNADKQPLHEEIIYVQGERNNVQVEVSLQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G+  REG T V
Sbjct: 242 TDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNLSGEHVREGLTGV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+ +PDP F  QTK KL ++EVR +V+S V + L+ +LE  P  A  I+ K + A    
Sbjct: 302 ISVNVPDPEFEGQTKTKLGNTEVRGIVDSLVGESLTEYLEFRPRIADAILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSTRDP 394


>gi|156901540|gb|ABU96760.1| GyrB [Salmonella choleraesuis]
 gi|156901542|gb|ABU96761.1| GyrB [Salmonella enterica subsp. diarizonae]
          Length = 391

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G  +   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKTHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|32364176|gb|AAP80236.1| GyrB [Bisgaard Taxon 14]
          Length = 391

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 234/395 (59%), Positives = 295/395 (74%), Gaps = 5/395 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E  +  G+   PL V G     
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSDQLQLTIRREGKVHEQFYSLGVPQAPLAVIGETE-Q 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT V FLPS   F+   F Y+ L  RLRELSFLNS V I LID+RS +       Y+GG
Sbjct: 60  TGTTVRFLPSPATFTNIHFEYELLAKRLRELSFLNSGVSIKLIDQRSDKS--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           I AFV YL+++K P+   P      +++ I +++A++WNDG+ EN+ CFTNNIPQ+DG T
Sbjct: 118 IRAFVEYLNKNKNPIHNQPFYFSIEKEDGIGVEVALQWNDGFQENLYCFTNNIPQRDGAT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+  R+ALTR + +Y+E     K  K S  GDD REG  +V+S+K+PDP+FSSQTK+KL
Sbjct: 178 HLAXFRAALTRTLNNYMEADEPKK-SKVSASGDDAREGLVAVISVKVPDPKFSSQTKDKL 236

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VES   + L  +L E+P +AKIIV K++DA+  R+AAR+AR++TRRKG LD+
Sbjct: 237 VSSEVKSAVESPWVERLQTYLLENPTDAKIIVGKIIDAAPAREAARKAREMTRRKGALDL 296

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKLADC ERDP  SEL++VEGDSAG SAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 297 GGLPGKLADCQERDPALSELYIVEGDSAGCSAKQGRNRKNQAILPLKGKILNVEKARFDK 356

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           MLSSQE+GTLITALG GIG+D ++  KLRYHKIII
Sbjct: 357 MLSSQEVGTLITALGCGIGRDEYNPEKLRYHKIII 391


>gi|33590342|gb|AAQ22711.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii]
          Length = 389

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 231/392 (58%), Positives = 299/392 (76%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTG 59

Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS D F    +F +D L  RLRELSFLNS V I LIDKR+    E    Y+GGI
Sbjct: 60  TRVRFWPSMDTFRDNTEFQHDILAKRLRELSFLNSGVSIRLIDKRT--NIEDHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR +  Y++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRTAMTRTLNRYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SSQE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSII 389


>gi|22090932|dbj|BAC06757.1| gyrase B [Salmonella paratyphi]
 gi|22090934|dbj|BAC06758.1| gyrase B [Salmonella paratyphi]
 gi|22090936|dbj|BAC06759.1| gyrase B [Salmonella paratyphi]
          Length = 390

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I I++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|187735688|ref|YP_001877800.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425740|gb|ACD05019.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 613

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 169/609 (27%), Positives = 278/609 (45%), Gaps = 54/609 (8%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLEGYADII 64
           +YD +SI+ L   + ++ RP MYIG          G++ ++ EV+DN+IDE + G+   I
Sbjct: 2   AYDENSIKTLDWREHIRMRPGMYIGKLGDGASPDDGIYVLLKEVIDNSIDEFVMGFGKKI 61

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           T+ +  DG C V D GRGIP     +    AA     +++ G K++  ++K S GL+GVG
Sbjct: 62  TIDVTPDGLCEVRDFGRGIPLGKLLD---CAA-----KINTGAKYDSDAFKKSVGLNGVG 113

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
           +  VNALS + +++  R+G      F  G         G+     GT   F    DIF  
Sbjct: 114 IKAVNALSDFFEIQAYRDGETRSYQFCRGKEIPKGRKDGATEEPNGTRTAFHADPDIFPA 173

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F  + ++   R  S+LN  + +    +R           K G+   ++      +  
Sbjct: 174 ATQFRPEYIEKMCRYYSYLNKGLALHFNGRR--------YISKNGLLDLLAEAMS--EAP 223

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +   I ++G      I++A      Y E    F N      GGTH +  R A+ + +  +
Sbjct: 224 LYPIIHLEGHD----IEVAFTHGGQYGEEHYSFVNGQHTTQGGTHQAAFREAIVKTLRDF 279

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS-------EVRSVV 356
            +K++ +          D R    + +SIK+ +P F SQTK KL S+        +R+ V
Sbjct: 280 FKKNYEAG---------DIRSSLVAAISIKVKEPVFESQTKTKLGSNTISPEGETIRTFV 330

Query: 357 ESFVNDGLSAWLEEHPLEAKII---VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +F+   L  +L ++P  AK +   +K            ++      RK  +   +L   
Sbjct: 331 GNFIARELDNYLHKNPETAKALEAKIKDSERDRKELSGIQKLARENARKAKIHNKNLRDC 390

Query: 414 LADCSERDPK--KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
               + +  +  ++ LF+ EG SA GS    R  E QA+  LRGK LN        +  +
Sbjct: 391 RVHYNSKHSRAGETTLFITEGISASGSITTARDAETQAVFSLRGKPLNSFGMSRKVVYEN 450

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +E   L  AL    G     + +LRY K++I TDAD DG HIR LL+TFF +  P LI  
Sbjct: 451 EEFNFLQHALNIENG-----LEELRYDKVVIATDADDDGMHIRILLMTFFIQFFPELIRE 505

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G L+I++ PL+ +   +   Y   +   E+ +     + EI  F    G IS  + + FI
Sbjct: 506 GHLFILQTPLFRVRNKQQTIYCYSDAEREEAISLLGKNPEITRF-KGLGEISPQEFKAFI 564

Query: 592 DDALKIDKL 600
            + +++D++
Sbjct: 565 GEGMRLDRV 573


>gi|300727525|ref|ZP_07060916.1| DNA topoisomerase II (N- region) domain protein [Prevotella
           bryantii B14]
 gi|299775228|gb|EFI71829.1| DNA topoisomerase II (N- region) domain protein [Prevotella
           bryantii B14]
          Length = 654

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 159/571 (27%), Positives = 257/571 (45%), Gaps = 62/571 (10%)

Query: 1   MSD------NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLD 50
           MS+      N Q   Y  D+I+ L  ++ V+ RP MYIG     +    G++ ++ EV+D
Sbjct: 1   MSEESVNIQNQQPVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLPEDGIYVLLKEVID 60

Query: 51  NAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           N+IDE        I V +  +   +V D GRGIP            E + + L+ GGK++
Sbjct: 61  NSIDEFKMKAGSRIEVDIEDNLRVSVRDYGRGIPQGK-------LVEAV-SVLNTGGKYD 112

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K++K S GL+GVGV  VNALSS   +R  REG + E+ F  G   +    T  + ++ G
Sbjct: 113 SKAFKKSVGLNGVGVKAVNALSSHFTVRSYREGKVREIEFEKGNKISD--HTNKSNDENG 170

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F P + +F    F+ D ++  LR  ++LNS + I     R           + G+E
Sbjct: 171 TFIYFEPDNTLFKNYSFHDDIVETMLRNYTYLNSGLTIMYNGCRI--------HSRNGLE 222

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             ++        +    +       +  I++A    + Y E    F N      GGTH S
Sbjct: 223 DLLT------DNMTVDGLYPIIHMKDDDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQS 276

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
             +  + + I  Y  K              D R G  + ++I + +P F SQTK KL S+
Sbjct: 277 AFKEHIAKTIKEYFNKYEY----------TDIRNGLVAAIAINVEEPVFESQTKIKLGST 326

Query: 351 EVRS---VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR------- 400
           ++      +  +V D +   ++ +      + + + +     +  R+A            
Sbjct: 327 QMSPDGDSINKYVGDFIKKEVDNYLHIHTDVAEVIENKIKESEHERKAMAGVTKLARERA 386

Query: 401 RKGVLDI---ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +K  L            +D      + S +F+ EGDSA GS  + R    QA+  LRGK 
Sbjct: 387 KKANLHNRKLRDCRVHFSDVKNPLKEASSIFITEGDSASGSITKSRDVNTQAVFSLRGKP 446

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LN        +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L+
Sbjct: 447 LNCFGLTKKIVYQNEEFNLLQAALNIEDG-----LDDLRYNKVIVATDADVDGMHIRLLI 501

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
           +TFF +  P LI  G +Y+++ PL+ +   +
Sbjct: 502 ITFFLQFYPDLIKKGHVYVLQTPLFRVRNRR 532


>gi|288800666|ref|ZP_06406123.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332127|gb|EFC70608.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 645

 Score =  363 bits (931), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 171/686 (24%), Positives = 292/686 (42%), Gaps = 67/686 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M D ++   Y  D+I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN+IDE 
Sbjct: 1   MVDQVK---YTDDNIRHLSDMEHVRTRPGMYIGRLGDGSLPEDGIYVLLKEVVDNSIDEF 57

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
                  I + +  + S +V D GRGIP            E + + L+ GGK++ K++K 
Sbjct: 58  KMNAGRRIEIDITENASVSVRDYGRGIPQGK-------LIEAV-SVLNTGGKYDSKAFKK 109

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S GL+GVG+  VNALS   ++R  R+G +    F  GIL +    T    ++ GT + F 
Sbjct: 110 SVGLNGVGIKAVNALSKRFEVRSYRDGKVRTAIFERGILQSD--KTTKTTDENGTFIFFE 167

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P + +F    F+ D ++  LR  ++LN+ + I    +R           + G+   ++  
Sbjct: 168 PDNQLFLNYRFHDDIIETMLRNYTYLNTGLAIMYNGRRI--------MSRNGLADLLTDT 219

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                  +   I I G      I++A    + Y E    F N      GGTH +  +  +
Sbjct: 220 MT--TDGLYPIIHIIGED----IEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQTAFKEHI 273

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-- 354
            + I  +  K+F            D R G  + ++I + +P F SQTK KL S+ +    
Sbjct: 274 AKTIKEFSGKNFEYG---------DIRNGLVAAIAINVEEPMFESQTKIKLGSTTMSPND 324

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-------RKGVL 405
              +  ++ D +   ++ +  +   I + +L      +  R++            +K  L
Sbjct: 325 GVSINKYIGDFVKTEVDNYLHKHADIAETMLAKIQESERERKSMAGVTKLARERAKKANL 384

Query: 406 DI---ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                       +D    D +KS +F+ EGDSA GS  + R    QA+  LRGK LN   
Sbjct: 385 HNRKLRDCRIHYSDGKNNDKEKSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFG 444

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
                +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF 
Sbjct: 445 LTKKVVYENEEFNLLQAALDIEEG-----LDSLRYNKVIVATDADVDGMHIRLLIITFFL 499

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGK---SLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           +  P LI  G +Y+++ PL+ +   K     + V +E   +    ++            +
Sbjct: 500 QFFPELIKKGHVYVLQTPLFRVRNKKTKIKNKAVLEENGNKQKQGDKKNDFITRYCYTEE 559

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
             I   D      +  +    + +  P+    FI   +           ++   L   + 
Sbjct: 560 ERIKAIDELGPSPEITRFKG-LGEISPDEFVHFIGPEMRLEQVTLHKTDQVQKLLEYYMG 618

Query: 640 ----NRLNFIAEKSEKSWHGSINNSD 661
                R NFI +          ++ +
Sbjct: 619 KNTMERQNFIIDNLLVEEDVVEDDKE 644


>gi|307939340|gb|ADN95861.1| DNA gyrase B [Hymenobacter algoricola]
          Length = 434

 Score =  363 bits (931), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 204/433 (47%), Positives = 284/433 (65%), Gaps = 17/433 (3%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT L AGGKF++  YK SGGLHGVGVS VNALS+   + ++R+G++YE  +  G+    +
Sbjct: 4   MTVLXAGGKFDKNXYKTSGGLHGVGVSCVNALSTHTHVTVERDGHVYEQEYHIGVPLYDV 63

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS--- 215
              G +    GT V F P   IF     ++Y+ +  RLREL++LN  ++I L D R+   
Sbjct: 64  REIGDST-GRGTRVMFQPDPSIFDETLVYSYERIATRLRELAYLNRGIRIVLTDLRTPAD 122

Query: 216 -PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
             E +    + +GG+  +V YLD  +  LM  P+ +   R  I +++A ++ND Y E++ 
Sbjct: 123 GGEEQRDEFYSQGGVAEYVQYLDNSRTVLMTRPVYVATER-GIPVEVAFQYNDSYQEHIF 181

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTH++G RSA+TR + +Y EKS    K K  + GDD REG T+V+S+K+
Sbjct: 182 SYVNNINTHEGGTHVAGFRSAITRVLKAYAEKSGEVAKAKIEIQGDDFREGLTAVISVKV 241

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV   V   V + L+ +LEE+P EA+IIV+KV+ A+  R AAR+
Sbjct: 242 QEPKFEGQTKGKLGNSEVSGAVNQVVGEILNQYLEENPKEARIIVEKVILAAKARVAARK 301

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++ +RK VL   SLPGKLADCSE DP   EL+LVEGDSAGG+AKQGR+R  QAILPLR
Sbjct: 302 AREMVQRKSVLGSNSLPGKLADCSESDPALCELYLVEGDSAGGTAKQGRNRAFQAILPLR 361

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----------NKLRYHKIIIMT 504
           GKILNVE+A+  ++  ++EI  +ITALG    + + +           +KLRYHK+IIMT
Sbjct: 362 GKILNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSTTRSLNLDKLRYHKVIIMT 421

Query: 505 DADVDGAHIRTLL 517
           DADV G+HIRTLL
Sbjct: 422 DADVXGSHIRTLL 434


>gi|324039418|dbj|BAJ78462.1| DNA gyrase subunit B [Alcanivorax sp. K2-1]
 gi|324039420|dbj|BAJ78463.1| DNA gyrase subunit B [Alcanivorax sp. K2-2]
          Length = 393

 Score =  363 bits (931), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 236/396 (59%), Positives = 303/396 (76%), Gaps = 4/396 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+ D PL V G+  + +
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLDVVGNT-DSS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + F PS++ FS   F+YD L  RLRELSFLNS V+I L D+RS E       Y+GG+
Sbjct: 60  GTSIHFRPSAETFSNIKFHYDILAKRLRELSFLNSGVRIHLKDERSGEE--EVFEYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFVS+L+ +K PL Q          D I++++AM+WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVSFLNENKTPLNQVFHFQYDREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR + +Y++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+  VE  + +    +L E+P EAK I +K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+GTLITALG GIG+D +++ KLRYH+IIIMT
Sbjct: 358 LSSQEVGTLITALGCGIGRDEYNVEKLRYHRIIIMT 393


>gi|211927053|dbj|BAG82779.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 390

 Score =  363 bits (931), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG +++  +++G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELTIRREGKVHQQIYVHGVPQAPLAVTGET-DITG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+    F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TRVRFWPSHETFTNVRDFEYDILAKRLRELSFLNSGVSIRLDDKRDGKS--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 RAFVEYLNKNKTPIHPTVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G RSA+TR + +Y+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRSAMTRTLNAYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKTAVEQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SE++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +SQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 ASQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|164608588|gb|ABY62585.1| DNA gyrase beta subunit [Aliivibrio logei]
 gi|164608598|gb|ABY62590.1| DNA gyrase beta subunit [Aliivibrio logei]
          Length = 395

 Score =  363 bits (931), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 236/397 (59%), Positives = 304/397 (76%), Gaps = 4/397 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G+   PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDTT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     ++GGI
Sbjct: 60  GTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFMFEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           +AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG 
Sbjct: 119 KAFVTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGA 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 HLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDI
Sbjct: 239 VSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 AGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 358

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           M+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 MISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMT 395


>gi|307939336|gb|ADN95859.1| DNA gyrase B [Hymenobacter gelipurpurascens]
          Length = 437

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 205/437 (46%), Positives = 285/437 (65%), Gaps = 19/437 (4%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +IMT LHAGG F++ SYKVSGGLHGVGVS VNALS  LK+ ++R G +YE  +  G    
Sbjct: 1   LIMTVLHAGGXFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGKMYEQEYKIGAPQY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----- 212
           P+   G    + GT+V FLP   IF+   + Y T+  RLRELS+LN  ++I+L D     
Sbjct: 61  PVREIGETE-EHGTQVEFLPDDTIFTESVYKYATVASRLRELSYLNKGIRITLTDRREKG 119

Query: 213 KRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           +   E      + +GG+  FV Y     ++ LM +PI +   + N  +++A+++ND Y E
Sbjct: 120 ENGAEFLTEDFYSEGGLAEFVQYLDGSERRALMPAPIHVISEKGNTPVEVALQYNDSYQE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  + NNI   +GGTH++G RSALTR + +Y +KS   +K K  + G+D REG T+V+S
Sbjct: 180 NIFSYVNNINTHEGGTHVAGFRSALTRTLKAYADKSGKLEKAKVEISGEDFREGLTAVIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++EV   V + V + L+ +LEE+P EA IIV+KV+ A+  R A
Sbjct: 240 VKVQEPQFEGQTKTKLGNNEVSGAVNTAVGEILTQYLEENPKEAGIIVEKVILAAKARIA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR++ +RK VL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAIL
Sbjct: 300 ARKAREMVQRKTVLGSTSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN------------KLRYHK 499
           PLRGKILNVE+A+  ++L ++EI  +ITALG   G ++                KLRYHK
Sbjct: 360 PLRGKILNVEKAQEHRILENEEIRNMITALGVSFGVNADVEKGIEADAKALNTTKLRYHK 419

Query: 500 IIIMTDADVDGAHIRTL 516
           + I+TDAD   + I TL
Sbjct: 420 VFILTDADXHXSXIHTL 436


>gi|269799094|gb|ACZ43825.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 364

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 208/366 (56%), Positives = 272/366 (74%), Gaps = 4/366 (1%)

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGV
Sbjct: 1   IVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 60

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS + F+
Sbjct: 61  GVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFT 119

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K P+
Sbjct: 120 NTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTPI 178

Query: 244 MQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + +
Sbjct: 179 NKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNN 238

Query: 303 YVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + 
Sbjct: 239 YMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMG 298

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKLADC E+D
Sbjct: 299 EKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQEKD 358

Query: 422 PKKSEL 427
           P  SEL
Sbjct: 359 PALSEL 364


>gi|9802387|gb|AAF99704.1| gyrase B subunit [Pseudoalteromonas sp. A316]
          Length = 396

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 234/398 (58%), Positives = 303/398 (76%), Gaps = 6/398 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL V G +   
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGESE-T 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGTE+ F PS + F+  DF+YD L  RLRELS LNS V I L D+R  E +     Y+GG
Sbjct: 60  TGTELRFWPSGETFTNLDFHYDILAKRLRELSSLNSGVSIILNDER-EENKTDHFKYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           I AFV YL+R+K P+ +        R+   IS++++M+WNDGY EN+ CFTNNIPQ+DGG
Sbjct: 119 IRAFVEYLNRNKTPIHKGVFHFTHEREEDGISVEVSMQWNDGYQENIYCFTNNIPQRDGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           THL+G RSALTR + +Y+EK   +KK K   +  GD  REG T+V+S+K+PDP+FSSQTK
Sbjct: 179 THLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDYAREGLTAVVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DAS  R+AAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +D+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+ KILNVE+AR
Sbjct: 299 MDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKPKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            DKMLSSQE+ +LITALG GIG+D ++  KLRYH+III
Sbjct: 359 VDKMLSSQEVASLITALGCGIGRDEYNPEKLRYHRIII 396


>gi|9971293|dbj|BAB12464.1| DNA gyrase B subunit [Oceanospirillum multiglobuliferum]
          Length = 391

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 229/393 (58%), Positives = 293/393 (74%), Gaps = 3/393 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  +YKVSGGLHGVGVSVVNALS  L L I R G ++E  + +G+   PL + G     
Sbjct: 1   FDDNTYKVSGGLHGVGVSVVNALSEELTLTIWRNGKVHEQVYRHGVPQEPLKIIGETT-K 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGTE  F PS + F+  +F+YD L  RLRELSFLNS V I+L+D+RS   R     Y+GG
Sbjct: 60  TGTEARFRPSPETFTNIEFHYDILAKRLRELSFLNSGVSITLLDERSG--RTDNFKYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + AFV YL+++K  L           D + +++A++WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 LRAFVEYLNQNKTALNTVFHFNAQREDGVGVEVALQWNDTYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + SY+E+   +KK+K S  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAALTRTLNSYIEQEAKNKKEKVSTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  +    +  L E+P EAK IV K++DA+  R+AAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKSAVEQEMGRLFADHLLENPNEAKAIVNKMIDAARAREAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS E+GTLITA+G GIG++ F+ +KLRYH II
Sbjct: 358 LSSAEVGTLITAMGCGIGREEFNPDKLRYHSII 390


>gi|156901528|gb|ABU96754.1| GyrB [Salmonella enterica subsp. arizonae]
          Length = 391

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL +TG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQLYEHGVPQAPLAITGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|147917469|gb|ABQ52587.1| gyrase B subunit [Vibrio alginolyticus]
 gi|147917475|gb|ABQ52590.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 389

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 232/391 (59%), Positives = 306/391 (78%), Gaps = 3/391 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 239 VKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRYHNIII 389


>gi|2196826|gb|AAB80830.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 228/410 (55%), Positives = 305/410 (74%), Gaps = 4/410 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L   GKF + S +VSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G   
Sbjct: 1   EVIMTVLRPLGKFEEPSKQVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A  +TGTE+ F PS + F+  +F+Y+ L  R+RELSFLNS V I LID+R  
Sbjct: 61  EPIKEIGEAT-NTGTEIRFWPSQETFTDTEFHYELLAKRIRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GG +AFV YL+R+K P+ +        R++ I++++AM+WNDG+ E++ C
Sbjct: 120 KD--EFFHYEGGPKAFVEYLNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGFQESIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
            TNNIPQ+DGGTHL+G R+ALTR + +Y+E    +KK K +  GDD REG T+V+ +K+P
Sbjct: 178 CTNNIPQRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVCVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F SQTK+KLVSSEV+  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR A
Sbjct: 238 DPKFRSQTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARGA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           KILNVE+ARFDKMLSSQE+ TLITALG GIG D  D  + RY + ++MTD
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGLDVSDPVQTRYQEFMVMTD 407


>gi|15530007|gb|AAL01491.1| gyrase B [bacterium PV-4]
          Length = 392

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 234/395 (59%), Positives = 303/395 (76%), Gaps = 4/395 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  LKL I+R+G +YE  +  G  D P+   G A  
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDAT- 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           +TGTE+ F PS++ FS   F++D L  R+RELSFLNS V I LID+R  +       Y+G
Sbjct: 60  NTGTEIRFWPSAETFSDTLFHFDILAKRVRELSFLNSGVGIRLIDERDNKD--EFFKYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GI AFV YL+ +K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GISAFVDYLNLNKTPVNKEIFHFVQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+ALTR + SY++K   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAALTRNLNSYMDKEGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VE  + + L  +L E+P EAK+IV K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKSAVEQTMGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 LGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           KMLSSQE+ TLITALG GIG+D +D +K RYH I+
Sbjct: 358 KMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIV 392


>gi|126035330|gb|ABN72418.1| gyrase B subunit [Shigella flexneri]
          Length = 390

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGT 59

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+
Sbjct: 60  MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A L
Sbjct: 238 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           SQE+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 SQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 390


>gi|294675109|ref|YP_003575725.1| type II topoisomerase family protein [Prevotella ruminicola 23]
 gi|294472315|gb|ADE81704.1| type II topoisomerase family protein [Prevotella ruminicola 23]
          Length = 649

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 160/563 (28%), Positives = 255/563 (45%), Gaps = 57/563 (10%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           N +  +YD  +IQ L GL+ ++ RP MYIG     S    G++ ++ EV DN+IDE    
Sbjct: 9   NPETVNYDEGNIQTLTGLEHIRLRPGMYIGRLGDGSSAEDGIYVLLKEVFDNSIDEFKMK 68

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
             D I V +  +   +V D GRGIP      E +S        L+  GKF+ K++K S G
Sbjct: 69  AGDRIEVNVEDNLRISVRDYGRGIPQGK-LIESVSI-------LNTSGKFDSKAFKKSIG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVGV  VNALSS  ++   R+G + +  F  G L +   VT  + ++ GT + F P +
Sbjct: 121 LNGVGVKAVNALSSHFEVHSYRDGKVRKAVFECGKLISD--VTEPSQDENGTYIYFEPDA 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+ + +++ LR  ++LN  + I    +R             G+E  +      
Sbjct: 179 TKFINYQFHDEIVENMLRNYTYLNIGLTIMYNGRRILSRH--------GLEDLLKDRMT- 229

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +   + +QG      I++A    + Y E    F N      GGTH S  +  + R 
Sbjct: 230 -SDALYPIVHLQGED----IEIAFTHANQYGEEYYSFVNGQHTTQGGTHQSAFKEHIART 284

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS----SEVRSV 355
           I  +  K              D R G  + ++I + +P F SQTK KL S     +    
Sbjct: 285 IKEFYGKYEY----------GDIRTGIVAAIAINVEEPLFESQTKIKLGSLTMAPDGGVS 334

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-------RKGVLDI- 407
           V  +V D +   ++ +    + + + + +     +  R+A            +K  L   
Sbjct: 335 VNKYVGDFIKTEVDNYLHIHQDVAEVLENKIKESERDRKAMAGVTKLARERAKKANLHNR 394

Query: 408 --ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
                    +D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN      
Sbjct: 395 KLRDCRIHFSDVKNDRKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNCFGLTK 454

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL          ++ LRY+K+I+ TDADVDG HIR L++TFF +  
Sbjct: 455 KVVYENEEFNLLQAAL-----DIEESLDTLRYNKVIVATDADVDGMHIRLLIITFFLQFF 509

Query: 526 PSLIHNGFLYIIKPPLYGITRGK 548
           P LI  G +Y+++ PL+ +   +
Sbjct: 510 PELIKKGHVYVLQTPLFRVRNRR 532


>gi|38224414|gb|AAR14136.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp. necrophorum]
          Length = 403

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 186/402 (46%), Positives = 269/402 (66%), Gaps = 2/402 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGND 168
             +YKVSGGLHGVG+SVVNALS W ++++KREGN+Y   ++ G     + +      G  
Sbjct: 2   NDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGET 61

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  +IF    F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +  ++GG
Sbjct: 62  TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGG 121

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  F+  + R  + L+   I I+G  + + +D+A  +  G  E +  F NNI   +GG+H
Sbjct: 122 ISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEVIYSFVNNINTPEGGSH 181

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ LT+ I    +     K+    + G D REG  +++S+K+P P+F  QTK KL 
Sbjct: 182 VTGFRTCLTKVINDIGKSQGFLKEKDGKLQGGDIREGIVAIISVKVPQPQFEGQTKTKLG 241

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEV  +V + ++  L  +LE++P + K+I++K+L +   R+AA+RAR+   RK VL++ 
Sbjct: 242 NSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSVLEVG 301

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADCS + P++ E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K 
Sbjct: 302 SLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKA 361

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           L S EI  ++TA GT IG++SFD+ KLRY KII+MTDADVDG
Sbjct: 362 LESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 403


>gi|147917471|gb|ABQ52588.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 390

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 232/391 (59%), Positives = 306/391 (78%), Gaps = 3/391 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 2   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQ 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AF
Sbjct: 61  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAF 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 120 VDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 180 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 240 VKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 300 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 359

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 360 QEVATLITALGCGIGRDEYNPDKLRYHNIII 390


>gi|224531691|ref|ZP_03672323.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           valaisiana VS116]
 gi|224511156|gb|EEF81562.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           valaisiana VS116]
          Length = 599

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 185/598 (30%), Positives = 275/598 (45%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +    + D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIR-KENNLIAIRDYGRGIPLGK-------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L     +   + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGNLLESKEI--ESSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R      LN  + I+  ++            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYVCLNKGLIINYNNQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNGSSEQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K+  Y   EE  +  ++      E+  F    G IS N+ + FID
Sbjct: 502 YILETPLFRVRNKKNTIYCYSEEEKQKAILELKGGCEVTRF-KGLGEISPNEFKGFID 558


>gi|84873490|gb|ABC67805.1| DNA gyrase subunit b [Vibrio harveyi]
          Length = 391

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 228/393 (58%), Positives = 305/393 (77%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+
Sbjct: 60  TQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 239 SEVKSAVESSMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 SSQEVATLITALGCGIGRDEYNPDKLRYHNIII 391


>gi|19909707|dbj|BAB87049.1| DNA gyrase subunit B [Pseudomonas sp. Tol5]
          Length = 289

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 155/291 (53%), Positives = 207/291 (71%), Gaps = 3/291 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
             SGLHHM++EV+DN+IDE+L G+ D I++ ++ D S TV DNGRGIP D+HKEEG+SAA
Sbjct: 1   DGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVKDNGRGIPVDVHKEEGVSAA 60

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+  
Sbjct: 61  EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQ 120

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+ + G +   TGT++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS 
Sbjct: 121 EPMKIVGDSE-TTGTQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSG 179

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GG+ AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCF
Sbjct: 180 KE--ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCF 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           TNNIPQ+DGGTHL G RSALTR + +Y+E    +KK K +  GDD R+G T
Sbjct: 238 TNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDARKGLT 288


>gi|290794999|gb|ADD64518.1| DNA gyrase B [Vibrio kanaloae]
          Length = 392

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 236/394 (59%), Positives = 304/394 (77%), Gaps = 3/394 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL + G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYNHGEPQAPLAIVGDT-DRT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +++YD L  RLRELSFLNS V I LID+R  E +     Y+GGI
Sbjct: 60  GTEIRFWPSEETFTNIEYHYDILAKRLRELSFLNSGVSIRLIDER-EEDKMDHFEYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG H
Sbjct: 119 QAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G RSALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRSALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 392


>gi|148971431|gb|ABR20253.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 215/421 (51%), Positives = 285/421 (67%), Gaps = 3/421 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L+I+R G +YE  +  G   
Sbjct: 1   EVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSERLFLKIRRSGALYEQEYRMGEPL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +P+   G A   TGTE+ F PS+ IFS  +F+Y+ L +R+RE+SFLNS V+I   D+R+ 
Sbjct: 61  HPIRKIGEA-RGTGTEIRFQPSAQIFSETNFDYEVLANRIREISFLNSGVKIYPTDERNE 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             R+   + +GGI AFV YL+R++     +     G    I +++A++W   Y E V CF
Sbjct: 120 --RQELFYVEGGIRAFVEYLNRNRTAPHPTVCHFSGGEAGIGVEVALQWTKSYQETVFCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNN+PQ+DGGTHL+G RSALTR +  ++E++  ++K+K  V GDD REG T+V+SI++  
Sbjct: 178 TNNLPQRDGGTHLTGFRSALTRTLVGFLEETGHARKEKVQVTGDDAREGLTAVVSIRVYR 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
            +     + +      ++                         ++ ++A+  R+AARRAR
Sbjct: 238 SQVQLPDQGQAGLLGSQTGRRGVRCRKTEGVSLGASGCRTPDCREKMEAARAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG LD+A LPGKLADC E+DP   ELFLVEGDSAGGSAKQ R R +QA+LPL GK
Sbjct: 298 DLTRRKGALDVAGLPGKLADCQEKDPSLCELFLVEGDSAGGSAKQARDRRHQAVLPLNGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           I+NVE+A FD++LSS EI  LITALG GIG+D F+   LRYH++IIMTDADVDG+HIRTL
Sbjct: 358 IINVEKASFDRVLSSDEITALITALGCGIGKDDFNAGNLRYHRVIIMTDADVDGSHIRTL 417

Query: 517 L 517
           L
Sbjct: 418 L 418


>gi|19909643|dbj|BAB87017.1| DNA gyrase subunit B [Serratia marcescens subsp. marcescens]
          Length = 389

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 239/392 (60%), Positives = 301/392 (76%), Gaps = 4/392 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G     TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLTVVGETE-QTGT 59

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F PS   F+   DF YD L  RLRELSFLNS V I L DKR+   RE    Y+GGI+
Sbjct: 60  MVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRTD--REDHFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+A+TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A L
Sbjct: 238 EVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG+D +  +KLRYH III
Sbjct: 358 SQEVATLITALGCGIGRDEYSPDKLRYHSIII 389


>gi|126035300|gb|ABN72403.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 389

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 236/392 (60%), Positives = 302/392 (77%), Gaps = 4/392 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGT 59

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+
Sbjct: 60  MVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A L
Sbjct: 238 EVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SQEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|295388378|gb|ADG03084.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 233/396 (58%), Positives = 308/396 (77%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHG+GVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGMGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S  ES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAFESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLEGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|164608586|gb|ABY62584.1| DNA gyrase beta subunit [Aliivibrio logei]
          Length = 395

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 235/397 (59%), Positives = 304/397 (76%), Gaps = 4/397 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  ++L I R G +++  + +G+   PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEVFQQIYCHGVPQAPLAVIG-TTDTT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     ++GGI
Sbjct: 60  GTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFMFEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           +AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG 
Sbjct: 119 KAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGA 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 HLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDI
Sbjct: 239 VSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 AGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 358

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           M+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 MISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMT 395


>gi|7407140|gb|AAF61926.1| DNA gyrase B [Klebsiella pneumoniae subsp. ozaenae]
          Length = 390

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 234/393 (59%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L+L I+R+  +++  + +G+   PL VTG   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DK 59

Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+G
Sbjct: 60  TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 118 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KL
Sbjct: 178 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+
Sbjct: 238 VSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 298 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           MLSSQE+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 390


>gi|198042718|gb|ACH81184.1| GyrB [Vibrio sp. UST040801-006]
          Length = 377

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 223/379 (58%), Positives = 295/379 (77%), Gaps = 3/379 (0%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL
Sbjct: 1   MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPL 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G   + TGT++ F PSS+ F+  +F+YD L  RLRELSFLNS V I L D+R  E +
Sbjct: 61  AVVGDT-DKTGTQIRFWPSSETFTNTEFHYDILAKRLRELSFLNSGVSIKLSDER-EEDK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTN 278
                Y+GGI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTN
Sbjct: 119 HDHFMYEGGIQAFVQHLNTNKTPIIEKIFHFNFEREDGISVEVAMQWNDGFQENIFCFTN 178

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+G R+ALTR + ++++K   S+K K +  GDD REG T+V+S+K+PDP+
Sbjct: 179 NIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSEKAKTATSGDDAREGLTAVVSVKVPDPK 238

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++
Sbjct: 239 FSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREM 298

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKIL
Sbjct: 299 TRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 358

Query: 459 NVERARFDKMLSSQEIGTL 477
           NVE+ARFDKMLSSQE+ TL
Sbjct: 359 NVEKARFDKMLSSQEVATL 377


>gi|85541239|gb|ABC70860.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 389

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 233/392 (59%), Positives = 299/392 (76%), Gaps = 4/392 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGT 59

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+
Sbjct: 60  MVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A L
Sbjct: 238 EVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+N AILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SPEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|190148814|gb|ACE63382.1| DNA gyrase B subunit [Thermobifida cellulosilytica TB100]
          Length = 407

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 193/408 (47%), Positives = 268/408 (65%), Gaps = 6/408 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L++ ++R+G ++   +      
Sbjct: 2   EVIMTVLHAGGKFDSKSYAVSGGLHGVGVSVVNALSTRLEVEVRRDGYLWTQRYEMTHPV 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L + G   ++TGT+VTF     IF    +N++TL  RL+E++FLN  + I++ D+R  
Sbjct: 62  TEL-IRGEPTDETGTQVTFWADGSIFETTTYNFETLSRRLQEMAFLNKGLSITIRDERPE 120

Query: 217 ----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y+GG+  FV +L+  K+P   S I  + S D I++++AM+WN  Y  +
Sbjct: 121 FVGDSPVTQTYHYEGGLADFVRHLNATKEPAHSSIIAFEDSGDGIAVEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       +    ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTTEGGTHEEGFRAALTSIVNRYARDQKLLRDKDDNLTGDDVREGLTAIVSV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   ++ L  W + +P EAK IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQKVCHEHLRDWFDRNPGEAKDIVTKASRAARARIAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LTRRK +L+  SLPGKLADC   DP++ E+++VEGDSAGGSAK GR    QAILP
Sbjct: 301 RQARELTRRKTLLESTSLPGKLADCQSTDPERCEVYIVEGDSAGGSAKGGRDPHYQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           +RGKILNVE+AR D++L + E+  +ITALGTG+  D FDI KLRYHK+
Sbjct: 361 IRGKILNVEKARIDRILKNNEVQAIITALGTGV-HDEFDIEKLRYHKV 407


>gi|34540199|ref|NP_904678.1| DNA topoisomerase IV subunit B [Porphyromonas gingivalis W83]
 gi|34396511|gb|AAQ65577.1| DNA topoisomerase IV, B subunit, putative [Porphyromonas gingivalis
           W83]
          Length = 644

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 152/566 (26%), Positives = 256/566 (45%), Gaps = 55/566 (9%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
           +    + Y    I+ L+  + +++RP MYIG     +    G++ ++ EVLDN++DE + 
Sbjct: 4   EKQLQTEYIESDIKTLEWDEHIRRRPGMYIGKLGDGTHADDGIYVLLKEVLDNSVDEFVM 63

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G    I +T+  +G+ TV D GRGIP     +           +++ GGK + K++K S 
Sbjct: 64  GAGKSIDITI-ENGTVTVRDYGRGIPLGKLVDAT--------CKMNTGGKIDSKAFKKSV 114

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG+  VNALS+   + + R+G    + +    L         +G  +GTEV F P 
Sbjct: 115 GLNGVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPV-PSGEPSGTEVRFTPD 173

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             +F    +  + +   ++  +FLN+ +      K+           + G+E  ++    
Sbjct: 174 DSLFRNYRYQEEFVVSMIKNYTFLNTGLSFFYNGKK--------FLSRKGLEDLLAENMT 225

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                    +       +  I++ +     Y +    F N      GGTHLS  R A+ R
Sbjct: 226 G------DALYPIIHLSDTDIEIVVTHTQQYGDEFYSFVNGQNTTQGGTHLSAFREAVAR 279

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------ 352
            I  +  K+F            D R G  + +SIK+ +P F SQTK KL S ++      
Sbjct: 280 TIKEFYSKNFEYS---------DIRSGMAAAISIKVEEPVFESQTKTKLGSRDMGPDGPT 330

Query: 353 -RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR------RARDLTRRKGVL 405
            +  V  F+   L  +L  H   A+ +++K+  +   R A        R R         
Sbjct: 331 IQKFVGDFLKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARERAKKSNLHNK 390

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +      L D   ++P+++ +F+ EG+SA GS    R    QA+  LRGK LN      
Sbjct: 391 KLRDCTVHLNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGKPLNCFGLTK 450

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL    G     ++ LRY+++II TDAD DG HIR L++TFF +  
Sbjct: 451 KVVYENEEFNLLQAALNIEEG-----LDGLRYNRVIIATDADDDGMHIRLLIITFFLQFF 505

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ 551
           P L+  G +Y+++ PL+ +      +
Sbjct: 506 PDLVRKGHVYVLETPLFRVFLPPESK 531



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ---LWETTLNPDTRSLLRVKI--T 768
           I           +  +G+K   + R+KGLGE++  Q   L    ++ +   L  V +   
Sbjct: 557 IYCYSEAEKQAALKQLGKK-ADVTRFKGLGEISPEQFKDL----IDEENIRLEPVSLKRE 611

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D  +  +L +  MG     R+EFI +N L    D+
Sbjct: 612 DKIK--ELLTFYMGKNTSERQEFIIDN-LVVDEDV 643


>gi|22090642|dbj|BAC06612.1| gyrase B [Escherichia coli]
 gi|22090648|dbj|BAC06615.1| gyrase B [Escherichia coli]
 gi|22090650|dbj|BAC06616.1| gyrase B [Escherichia coli]
 gi|22090652|dbj|BAC06617.1| gyrase B [Escherichia coli]
 gi|22090654|dbj|BAC06618.1| gyrase B [Escherichia coli]
 gi|22090656|dbj|BAC06619.1| gyrase B [Escherichia coli]
 gi|22090712|dbj|BAC06647.1| gyrase B [Escherichia coli]
 gi|22090804|dbj|BAC06693.1| gyrase B [Escherichia coli]
 gi|22090806|dbj|BAC06694.1| gyrase B [Escherichia coli]
 gi|22090808|dbj|BAC06695.1| gyrase B [Escherichia coli]
 gi|22090810|dbj|BAC06696.1| gyrase B [Escherichia coli]
 gi|22090812|dbj|BAC06697.1| gyrase B [Escherichia coli]
 gi|22090814|dbj|BAC06698.1| gyrase B [Escherichia coli]
 gi|22090816|dbj|BAC06699.1| gyrase B [Escherichia coli]
 gi|22090818|dbj|BAC06700.1| gyrase B [Escherichia coli]
 gi|22090820|dbj|BAC06701.1| gyrase B [Escherichia coli]
 gi|22090824|dbj|BAC06703.1| gyrase B [Escherichia coli]
 gi|22090826|dbj|BAC06704.1| gyrase B [Escherichia coli]
 gi|22090828|dbj|BAC06705.1| gyrase B [Escherichia coli]
 gi|22090830|dbj|BAC06706.1| gyrase B [Escherichia coli]
 gi|22090832|dbj|BAC06707.1| gyrase B [Escherichia coli]
 gi|22090834|dbj|BAC06708.1| gyrase B [Escherichia coli]
 gi|22090846|dbj|BAC06714.1| gyrase B [Escherichia coli]
 gi|22090848|dbj|BAC06715.1| gyrase B [Escherichia coli]
 gi|22090854|dbj|BAC06718.1| gyrase B [Escherichia coli]
 gi|22090864|dbj|BAC06723.1| gyrase B [Escherichia coli]
 gi|22090868|dbj|BAC06725.1| gyrase B [Escherichia coli]
 gi|22090870|dbj|BAC06726.1| gyrase B [Escherichia coli]
 gi|22090872|dbj|BAC06727.1| gyrase B [Escherichia coli]
 gi|22090874|dbj|BAC06728.1| gyrase B [Escherichia coli]
 gi|22090876|dbj|BAC06729.1| gyrase B [Escherichia coli]
 gi|22090878|dbj|BAC06730.1| gyrase B [Escherichia coli]
 gi|22090880|dbj|BAC06731.1| gyrase B [Escherichia coli]
 gi|22090884|dbj|BAC06733.1| gyrase B [Escherichia coli]
 gi|22090890|dbj|BAC06736.1| gyrase B [Escherichia coli]
 gi|22090906|dbj|BAC06744.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|31071479|dbj|BAC76788.1| DNA gyrase B subunit [Chlorogloeopsis fritschii PCC 6912]
          Length = 396

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 185/393 (47%), Positives = 260/393 (66%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   + V LN DGS TV+D+GRGIPTD+H + G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTDIHPQTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVG+SVVNALS W+++++ R+  +Y   +  G+  
Sbjct: 62  ETVLTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVKVWRDKKVYAQRYERGVPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L       N TGT V F P   IF +  +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELTAKPYKENRTGTSVNFKPDPQIFTTDTEFDYITLASRLRELAYLNAGVKITFTDYRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S +P+  T  Y+GGI  +++Y+   K+PL +  I +QG R+N+ ++++++W  D Y
Sbjct: 182 QLLKSDQPKVETYEYEGGIREYIAYMIADKQPLHEEVIYVQGERNNVQVEVSLQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G+  REG T V
Sbjct: 242 TDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNLSGEHVREGLTGV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE  P  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGESLTEYLEFRPSIADAILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSTRDP 394


>gi|88824751|gb|ABD52421.1| gyrase B [Escherichia coli]
          Length = 392

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 236/395 (59%), Positives = 301/395 (76%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+ R + +Y++K   SKK K S  GDD REG  +V+S+K+PD +FSSQTK+KLVS
Sbjct: 178 AGFRAAMARTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDXKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 392


>gi|110612665|gb|ABG78295.1| GyrB [uncultured bacterium]
          Length = 405

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 194/410 (47%), Positives = 272/410 (66%), Gaps = 7/410 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+   YKVSGGLHGVGVSVVNALS  L L I + G I+  ++  G  + PL V G   
Sbjct: 1   GKFDNSLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPEAPLAVFGET- 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           +  GT + F P   I     F+++TL HR RE++FLN  + I L D+ +   RE T  ++
Sbjct: 60  DQRGTTIRFWPDMTIMETDQFSFETLAHRFREMAFLNPVLTIHLKDEET--LREETFHFE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDG 285
           GG+++FVS+L+ +KK         +   D    ++A ++ +   +E VL F NNI  ++G
Sbjct: 118 GGVQSFVSFLNENKKTFHDVLFFRKNMEDGSQFEVAFQYQESTENETVLGFANNIHTREG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH+ G R+A+T+ I  ++ +   +K ++    G+D REG T ++S+++P P+F  QTK 
Sbjct: 178 GTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIPSPQFEGQTKA 235

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL SS V   +ESF+++ L    EE P  AK I +K +  +  R+AAR+A+DL +RK VL
Sbjct: 236 KLGSSWVAGAMESFLSEVLQEKFEEDPQTAKKIAEKAVLTAQAREAARKAKDLAKRKNVL 295

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR- 464
           + ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE++R 
Sbjct: 296 EGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRG 355

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
            +K +++ E+  LITA+G G+G + F   KLRYHKIIIMTDADVDG+HIR
Sbjct: 356 IEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVDGSHIR 405


>gi|110612645|gb|ABG78285.1| GyrB [uncultured bacterium]
          Length = 397

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 244/399 (61%), Positives = 309/399 (77%), Gaps = 3/399 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L L I+R G I+E  + +G+ D P+  TG A   
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEELHLVIRRHGKIHEQHYRHGVPDAPIAETGDAT-T 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT++ F PS++ FS  +F+YD L  RLRELS+LNS V I L D+RS   R+ T  Y+GG
Sbjct: 60  TGTQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERS--QRQDTFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I AFV +L+++K  +  +   +   +DNI ++L+M+WND Y E + CFTNNIPQ+DGGTH
Sbjct: 118 IRAFVEHLNKNKTVINPAVFSMSAEKDNIVVELSMQWNDSYQETLFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTR + +Y+E    +KK K S  GDD REG T+VLS+K+PDP+FSSQTK+KLV
Sbjct: 178 MAGFRAALTRTLNNYIENEGHAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+SVVES V++ L+ +L ++P  AK IV K++DA+  R+AARRAR +TRRKG LDIA
Sbjct: 238 SSEVKSVVESSVSEKLNDFLMKNPAAAKAIVAKIIDAARAREAARRARGMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           LSSQE+ TLITALG GIG D +D +K+RYH+IIIMTDAD
Sbjct: 358 LSSQEVATLITALGCGIGPDEYDPDKVRYHRIIIMTDAD 396


>gi|82940548|emb|CAJ44282.1| gyrase B protein [Vibrio chagasii]
          Length = 393

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 233/393 (59%), Positives = 301/393 (76%), Gaps = 3/393 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G   +PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQSPLAVIGDT-DQT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + FS   F+YD L  RLRELSFLNS V I LID+R  E +     ++GGI
Sbjct: 60  GTEIRFWPSEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVDHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSSQE+ TLITALG GIG+D ++ +KLRYH I 
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIH 391


>gi|22090644|dbj|BAC06613.1| gyrase B [Escherichia coli]
 gi|22090662|dbj|BAC06622.1| gyrase B [Escherichia coli]
 gi|22090766|dbj|BAC06674.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHNIII 390


>gi|164608604|gb|ABY62593.1| DNA gyrase beta subunit [Aliivibrio wodanis]
          Length = 399

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 238/401 (59%), Positives = 307/401 (76%), Gaps = 4/401 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R+G I++ ++ +G    PL V G+ 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRKGEIFQQTYCHGEPQAPLAVVGTT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
                T++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     +
Sbjct: 61  DTTG-TKIRFWPSDQTFTNVEFVYDILAKRLRELSFLNSGVSIILQDMR-EEDKSDHFMF 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           +GGI+AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+
Sbjct: 119 EGGIQAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGG HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG
Sbjct: 239 KDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 ALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           RFDKM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 RFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMT 399


>gi|188995458|ref|YP_001929710.1| DNA topoisomerase IV subunit B [Porphyromonas gingivalis ATCC
           33277]
 gi|188595138|dbj|BAG34113.1| DNA topoisomerase IV B subunit [Porphyromonas gingivalis ATCC
           33277]
          Length = 644

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 153/566 (27%), Positives = 256/566 (45%), Gaps = 55/566 (9%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
           +    + Y    I+ L+  + +++RP MYIG     S    G++ ++ EVLDN++DE + 
Sbjct: 4   EKQLQTEYIESDIKTLEWDEHIRRRPGMYIGKLGDGSHADDGIYVLLKEVLDNSVDEFVM 63

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G    I +T+  +G+ TV D GRGIP     +           +++ GGK + K++K S 
Sbjct: 64  GAGKSIDITI-ENGTVTVRDYGRGIPLGKLVDAT--------CKMNTGGKIDSKAFKKSV 114

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG+  VNALS+   + + R+G    + +    L         +G  +GTEV F P 
Sbjct: 115 GLNGVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPV-PSGEPSGTEVRFTPD 173

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             +F    +  + +   ++  +FLN+ +      K+           + G+E  ++    
Sbjct: 174 DSLFRNYRYQEEFVVSMIKNYTFLNTGLSFFYNGKK--------FLSRKGLEDLLAENMT 225

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                    +       +  I++ +     Y +    F N      GGTHLS  R A+ R
Sbjct: 226 G------DALYPIIHLSDTDIEIVVTHTQQYGDEFYSFVNGQNTTQGGTHLSAFREAVAR 279

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------ 352
            I  +  K+F            D R G  + +SIK+ +P F SQTK KL S ++      
Sbjct: 280 TIKEFYSKNFEYS---------DIRSGMAAAISIKVEEPVFESQTKTKLGSRDMGPDGPT 330

Query: 353 -RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR------RARDLTRRKGVL 405
            +  V  F+   L  +L  H   A+ +++K+  +   R A        R R         
Sbjct: 331 IQKFVGDFLKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARERAKKSNLHNK 390

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +      L D   ++P+++ +F+ EG+SA GS    R    QA+  LRGK LN      
Sbjct: 391 KLRDCTVHLNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGKPLNCFGLTK 450

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL    G     ++ LRY+++II TDAD DG HIR L++TFF +  
Sbjct: 451 KVVYENEEFNLLQAALNIEEG-----LDGLRYNRVIIATDADDDGMHIRLLIITFFLQFF 505

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ 551
           P L+  G +Y+++ PL+ +      +
Sbjct: 506 PDLVRKGHVYVLETPLFRVFLPPESK 531



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ---LWETTLNPDTRSLLRVKI--T 768
           I           +  +G+K   + R+KGLGE++  Q   L    ++ +   L  V +   
Sbjct: 557 IYCYSEAEKQAALKQLGKK-ADVTRFKGLGEISPEQFKDL----IDEENIRLEPVSLKRE 611

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           D  +  +L +  MG     R+EFI +N L    D+
Sbjct: 612 DKIK--ELLTFYMGKNTSERQEFIIDN-LVVDEDV 643


>gi|78096533|emb|CAJ40941.1| DNA gyrase subunit B [Aeromonas eucrenophila]
 gi|78096535|emb|CAJ40942.1| DNA gyrase subunit B [Aeromonas eucrenophila]
          Length = 386

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 234/388 (60%), Positives = 299/388 (77%), Gaps = 2/388 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F
Sbjct: 1   VSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS  IFS   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV Y
Sbjct: 61  WPSPTIFSDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEY 118

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+ Q        +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+A
Sbjct: 119 LNQNKTPIHQKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 179 LTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLA
Sbjct: 239 VEQAMGEKLAEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+G
Sbjct: 299 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 358

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIM 503
           TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 359 TLITALGCGIGRDEYNPDKLRYHNIIIM 386


>gi|19909555|dbj|BAB86973.1| DNA gyrase subunit B [Rhodothalassium salexigens]
          Length = 390

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 250/390 (64%), Positives = 302/390 (77%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WL+LRI R+G  + M F +G     L   G A   TG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSEWLELRIWRDGGEFTMRFEHGEPQGDLARVGDAATKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF PS   F + DF ++ L+ R REL+FLNS V I L D R  +PR++ + Y+GGI 
Sbjct: 61  TQVTFKPSEATFKIVDFEFEKLERRFRELAFLNSGVHIQLEDHRHADPRQVNLHYEGGIT 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV ++DR K  L+  PI IQG RD ++++LAM W D YHENV CFTNNIPQ+DGGTHL+
Sbjct: 121 EFVRHIDRTKTALVTEPITIQGERDGVTVELAMEWTDSYHENVFCFTNNIPQRDGGTHLA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
             R+ALTR + +Y   S  +KK K S+ GDD REG T+VLS+K+PDP+FSSQTKEKLVSS
Sbjct: 181 AFRAALTRAVNAYAGSSGQAKKAKVSISGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE+ +N+ L+ W EE+P EAK ++ KV+DA+  R+AAR+AR+LTRRKG LD+ASL
Sbjct: 241 EVRPAVEALMNEQLATWFEENPNEAKAVIAKVVDAAAAREAARKARELTRRKGALDVASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP KSELF+VEGDSAGGSAKQGR+R  QAILPLRGKILNVERARFD+ML+
Sbjct: 301 PGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNRSFQAILPLRGKILNVERARFDRMLA 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           S EIGTLITALGTGIG+D F+  KLRYHKI
Sbjct: 361 SNEIGTLITALGTGIGRDDFNAEKLRYHKI 390


>gi|95105516|gb|ABF54925.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 391

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 229/393 (58%), Positives = 305/393 (77%), Gaps = 3/393 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKV+GGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVAGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSSQE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNII 391


>gi|22091032|dbj|BAC06807.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSHETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|51921644|gb|AAU13948.1| gyrase B subunit [Vibrio vulnificus]
          Length = 391

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 305/393 (77%), Gaps = 3/393 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  + L I R G+ +  ++ +G+ D PL + G     TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTE-KTGTTVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L
Sbjct: 60  PSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFMYEGGIQAFVTHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 119 NRNKTPIHEKVFHFNSEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY++K   SKK K +  GDD REG T+V+S+K+PDP FSSQ ++KLVSSEV+S 
Sbjct: 179 LTRTLNSYMDKRSYSKKAKTANSGDDAREGLTAVVSVKVPDPNFSSQNQDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VESF+ D L+ +L EHP EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 239 VESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 299 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 358

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           TLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 359 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 391


>gi|82940536|emb|CAJ44276.1| gyrase B protein [Vibrio cyclitrophicus]
          Length = 392

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 234/394 (59%), Positives = 303/394 (76%), Gaps = 3/394 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI
Sbjct: 60  GTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFEYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG H
Sbjct: 119 QAFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLITALG GIG+D ++ +KLRYH I +
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIHL 392


>gi|19909619|dbj|BAB87005.1| DNA gyrase subunit B [Marinobacterium jannaschii]
          Length = 389

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 219/392 (55%), Positives = 293/392 (74%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS+ L+L ++R G ++E  + +G+   PL V G     +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSTELRLTVRRNGKVHEQVYEHGVPREPLKVIGETE-SSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ F+   F +D L  RLRELSFLNS V+I L D+R+   RE    Y+GG+ 
Sbjct: 60  THVRFFPSTETFTNTTFQFDLLAKRLRELSFLNSGVRIVLKDERAG--REEVFEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+ +K  +           + + +++AM+WND + E++ CFTNNIPQ+DGGTHLS
Sbjct: 118 AFVGFLNTNKTTVNNMFHFTVMHENGVGVEVAMQWNDSFQESIHCFTNNIPQRDGGTHLS 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+E    +K  K +  GDDCREG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRTALTRCLNNYIESEGLNKNGKIATSGDDCREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  + + L+ +L+E+P ++K +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQCMGEKLAEYLQENPQDSKSVVAKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SELF+VEGDSAGG AKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELFIVEGDSAGGFAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG++ ++ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGREEYNPDKLRYHSIII 389


>gi|22090792|dbj|BAC06687.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|19909761|dbj|BAB87076.1| DNA gyrase subunit B [Rhodomicrobium vannielii ATCC 17100]
          Length = 392

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 253/392 (64%), Positives = 309/392 (78%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+ L+L I R G+ + M+F +G+   PL + G A +  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTRLELTIWRSGHEHFMAFADGVPVEPLKIVGPAPDLRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T VTF PS   F++ DF+Y TL+ RLREL+FLNS V I L D R  EP +    Y+GG++
Sbjct: 61  TRVTFTPSPATFTMVDFDYATLEFRLRELAFLNSGVYIRLNDLRGVEPVKSEFKYEGGLK 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR + PL   P+ ++  R+ ++++ A+ WNDGYHENVLCFTNNIPQ+DGGTHL+
Sbjct: 121 AFVEYLDRARTPLFPVPVFVRADREGVAVEAALWWNDGYHENVLCFTNNIPQRDGGTHLA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR I +Y   +  +K++K  + GDD REG T VLS+K+ DP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRTINTYAAATGVAKREKVQLTGDDAREGLTCVLSVKVADPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VES + D L  W EEHP+E K+I+ KV +A+  R+AAR+AR+LTRRKGVLD+A+L
Sbjct: 241 EVRPAVESIMTDILGTWFEEHPVEGKLILLKVAEAAAAREAARKARELTRRKGVLDVANL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP KSE+FLVEGDSAGGSAKQGR R NQA+LPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCQERDPAKSEVFLVEGDSAGGSAKQGRDRSNQAVLPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGTGIG+D FDI KLRYH+III
Sbjct: 361 SQEIGTLITALGTGIGRDDFDIAKLRYHRIII 392


>gi|18147185|dbj|BAB83073.1| DNA gyrase subunit B [Alcanivorax sp. Can-2]
 gi|18147187|dbj|BAB83074.1| DNA gyrase subunit B [Alcanivorax sp. Can-3]
 gi|18147189|dbj|BAB83075.1| DNA gyrase subunit B [Alcanivorax sp. Can-4]
 gi|18147191|dbj|BAB83076.1| DNA gyrase subunit B [Alcanivorax sp. Hak-1]
 gi|18147193|dbj|BAB83077.1| DNA gyrase subunit B [Alcanivorax sp. Hak-2]
          Length = 392

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 240/395 (60%), Positives = 304/395 (76%), Gaps = 4/395 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G   + +
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+
Sbjct: 60  GTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFVSYL+ +K PL Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + SY++K    KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           LSSQE+GTLITALG GIG+D ++I KLRYH+IIIM
Sbjct: 358 LSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIM 392


>gi|22090646|dbj|BAC06614.1| gyrase B [Escherichia coli]
 gi|22090658|dbj|BAC06620.1| gyrase B [Escherichia coli]
 gi|22090660|dbj|BAC06621.1| gyrase B [Escherichia coli]
 gi|22090664|dbj|BAC06623.1| gyrase B [Escherichia coli]
 gi|22090666|dbj|BAC06624.1| gyrase B [Escherichia coli]
 gi|22090668|dbj|BAC06625.1| gyrase B [Escherichia coli]
 gi|22090670|dbj|BAC06626.1| gyrase B [Escherichia coli]
 gi|22090672|dbj|BAC06627.1| gyrase B [Escherichia coli]
 gi|22090674|dbj|BAC06628.1| gyrase B [Escherichia coli]
 gi|22090676|dbj|BAC06629.1| gyrase B [Escherichia coli]
 gi|22090678|dbj|BAC06630.1| gyrase B [Escherichia coli]
 gi|22090680|dbj|BAC06631.1| gyrase B [Escherichia coli]
 gi|22090682|dbj|BAC06632.1| gyrase B [Escherichia coli]
 gi|22090684|dbj|BAC06633.1| gyrase B [Escherichia coli]
 gi|22090686|dbj|BAC06634.1| gyrase B [Escherichia coli]
 gi|22090688|dbj|BAC06635.1| gyrase B [Escherichia coli]
 gi|22090690|dbj|BAC06636.1| gyrase B [Escherichia coli]
 gi|22090692|dbj|BAC06637.1| gyrase B [Escherichia coli]
 gi|22090694|dbj|BAC06638.1| gyrase B [Escherichia coli]
 gi|22090696|dbj|BAC06639.1| gyrase B [Escherichia coli]
 gi|22090698|dbj|BAC06640.1| gyrase B [Escherichia coli]
 gi|22090700|dbj|BAC06641.1| gyrase B [Escherichia coli]
 gi|22090702|dbj|BAC06642.1| gyrase B [Escherichia coli]
 gi|22090704|dbj|BAC06643.1| gyrase B [Escherichia coli]
 gi|22090706|dbj|BAC06644.1| gyrase B [Escherichia coli]
 gi|22090708|dbj|BAC06645.1| gyrase B [Escherichia coli]
 gi|22090710|dbj|BAC06646.1| gyrase B [Escherichia coli]
 gi|22090714|dbj|BAC06648.1| gyrase B [Escherichia coli]
 gi|22090716|dbj|BAC06649.1| gyrase B [Escherichia coli]
 gi|22090718|dbj|BAC06650.1| gyrase B [Escherichia coli]
 gi|22090720|dbj|BAC06651.1| gyrase B [Escherichia coli]
 gi|22090724|dbj|BAC06653.1| gyrase B [Escherichia coli]
 gi|22090726|dbj|BAC06654.1| gyrase B [Escherichia coli]
 gi|22090728|dbj|BAC06655.1| gyrase B [Escherichia coli]
 gi|22090730|dbj|BAC06656.1| gyrase B [Escherichia coli]
 gi|22090732|dbj|BAC06657.1| gyrase B [Escherichia coli]
 gi|22090734|dbj|BAC06658.1| gyrase B [Escherichia coli]
 gi|22090736|dbj|BAC06659.1| gyrase B [Escherichia coli]
 gi|22090738|dbj|BAC06660.1| gyrase B [Escherichia coli]
 gi|22090740|dbj|BAC06661.1| gyrase B [Escherichia coli]
 gi|22090742|dbj|BAC06662.1| gyrase B [Escherichia coli]
 gi|22090744|dbj|BAC06663.1| gyrase B [Escherichia coli]
 gi|22090746|dbj|BAC06664.1| gyrase B [Escherichia coli]
 gi|22090748|dbj|BAC06665.1| gyrase B [Escherichia coli]
 gi|22090750|dbj|BAC06666.1| gyrase B [Escherichia coli]
 gi|22090752|dbj|BAC06667.1| gyrase B [Escherichia coli]
 gi|22090754|dbj|BAC06668.1| gyrase B [Escherichia coli]
 gi|22090756|dbj|BAC06669.1| gyrase B [Escherichia coli]
 gi|22090758|dbj|BAC06670.1| gyrase B [Escherichia coli]
 gi|22090760|dbj|BAC06671.1| gyrase B [Escherichia coli]
 gi|22090762|dbj|BAC06672.1| gyrase B [Escherichia coli]
 gi|22090764|dbj|BAC06673.1| gyrase B [Escherichia coli]
 gi|22090768|dbj|BAC06675.1| gyrase B [Escherichia coli]
 gi|22090770|dbj|BAC06676.1| gyrase B [Escherichia coli]
 gi|22090772|dbj|BAC06677.1| gyrase B [Escherichia coli]
 gi|22090774|dbj|BAC06678.1| gyrase B [Escherichia coli]
 gi|22090776|dbj|BAC06679.1| gyrase B [Escherichia coli]
 gi|22090778|dbj|BAC06680.1| gyrase B [Escherichia coli]
 gi|22090780|dbj|BAC06681.1| gyrase B [Escherichia coli]
 gi|22090782|dbj|BAC06682.1| gyrase B [Escherichia coli]
 gi|22090784|dbj|BAC06683.1| gyrase B [Escherichia coli]
 gi|22090786|dbj|BAC06684.1| gyrase B [Escherichia coli]
 gi|22090788|dbj|BAC06685.1| gyrase B [Escherichia coli]
 gi|22090790|dbj|BAC06686.1| gyrase B [Escherichia coli]
 gi|22090794|dbj|BAC06688.1| gyrase B [Escherichia coli]
 gi|22090796|dbj|BAC06689.1| gyrase B [Escherichia coli]
 gi|22090798|dbj|BAC06690.1| gyrase B [Escherichia coli]
 gi|22090800|dbj|BAC06691.1| gyrase B [Escherichia coli]
 gi|22090802|dbj|BAC06692.1| gyrase B [Escherichia coli]
 gi|22090822|dbj|BAC06702.1| gyrase B [Escherichia coli]
 gi|22090836|dbj|BAC06709.1| gyrase B [Escherichia coli]
 gi|22090838|dbj|BAC06710.1| gyrase B [Escherichia coli]
 gi|22090840|dbj|BAC06711.1| gyrase B [Escherichia coli]
 gi|22090842|dbj|BAC06712.1| gyrase B [Escherichia coli]
 gi|22090844|dbj|BAC06713.1| gyrase B [Escherichia coli]
 gi|22090850|dbj|BAC06716.1| gyrase B [Escherichia coli]
 gi|22090852|dbj|BAC06717.1| gyrase B [Escherichia coli]
 gi|22090856|dbj|BAC06719.1| gyrase B [Escherichia coli]
 gi|22090858|dbj|BAC06720.1| gyrase B [Escherichia coli]
 gi|22090860|dbj|BAC06721.1| gyrase B [Escherichia coli]
 gi|22090862|dbj|BAC06722.1| gyrase B [Escherichia coli]
 gi|22090882|dbj|BAC06732.1| gyrase B [Escherichia coli]
 gi|22090886|dbj|BAC06734.1| gyrase B [Escherichia coli]
 gi|22090888|dbj|BAC06735.1| gyrase B [Escherichia coli]
 gi|22090892|dbj|BAC06737.1| gyrase B [Escherichia coli]
 gi|22090894|dbj|BAC06738.1| gyrase B [Escherichia coli]
 gi|22090896|dbj|BAC06739.1| gyrase B [Escherichia coli]
 gi|22090898|dbj|BAC06740.1| gyrase B [Escherichia coli]
 gi|22090900|dbj|BAC06741.1| gyrase B [Escherichia coli]
 gi|22090902|dbj|BAC06742.1| gyrase B [Escherichia coli]
 gi|22090908|dbj|BAC06745.1| gyrase B [Escherichia coli]
 gi|22090960|dbj|BAC06771.1| gyrase B [Shigella boydii]
 gi|22090962|dbj|BAC06772.1| gyrase B [Shigella boydii]
 gi|22090964|dbj|BAC06773.1| gyrase B [Shigella boydii]
 gi|22090966|dbj|BAC06774.1| gyrase B [Shigella flexneri]
 gi|22090968|dbj|BAC06775.1| gyrase B [Shigella flexneri]
 gi|22090970|dbj|BAC06776.1| gyrase B [Shigella flexneri]
 gi|22090972|dbj|BAC06777.1| gyrase B [Shigella flexneri]
 gi|22090974|dbj|BAC06778.1| gyrase B [Shigella flexneri]
 gi|22090976|dbj|BAC06779.1| gyrase B [Shigella flexneri]
 gi|22090978|dbj|BAC06780.1| gyrase B [Shigella flexneri]
 gi|22090980|dbj|BAC06781.1| gyrase B [Shigella flexneri]
 gi|22090982|dbj|BAC06782.1| gyrase B [Shigella flexneri]
 gi|22090984|dbj|BAC06783.1| gyrase B [Shigella flexneri]
 gi|22090986|dbj|BAC06784.1| gyrase B [Shigella flexneri]
 gi|22090988|dbj|BAC06785.1| gyrase B [Shigella flexneri]
 gi|22090990|dbj|BAC06786.1| gyrase B [Shigella flexneri]
 gi|22090992|dbj|BAC06787.1| gyrase B [Shigella flexneri]
 gi|22090994|dbj|BAC06788.1| gyrase B [Shigella flexneri]
 gi|22090996|dbj|BAC06789.1| gyrase B [Shigella sonnei]
 gi|22090998|dbj|BAC06790.1| gyrase B [Shigella sonnei]
 gi|22091000|dbj|BAC06791.1| gyrase B [Shigella sonnei]
 gi|22091002|dbj|BAC06792.1| gyrase B [Shigella sonnei]
 gi|22091004|dbj|BAC06793.1| gyrase B [Shigella sonnei]
 gi|22091006|dbj|BAC06794.1| gyrase B [Shigella sonnei]
 gi|22091008|dbj|BAC06795.1| gyrase B [Shigella sonnei]
 gi|22091010|dbj|BAC06796.1| gyrase B [Shigella sonnei]
 gi|22091012|dbj|BAC06797.1| gyrase B [Shigella sonnei]
 gi|22091014|dbj|BAC06798.1| gyrase B [Shigella sonnei]
 gi|22091016|dbj|BAC06799.1| gyrase B [Shigella sonnei]
 gi|22091018|dbj|BAC06800.1| gyrase B [Shigella sonnei]
 gi|116734150|gb|ABK20137.1| gyraseB [Shigella boydii]
          Length = 390

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|22090866|dbj|BAC06724.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 300/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AK +V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKFVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|22090722|dbj|BAC06652.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARSREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|85541235|gb|ABC70858.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Manhattan]
          Length = 388

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 231/390 (59%), Positives = 298/390 (76%), Gaps = 4/390 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GG
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A
Sbjct: 238 SSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+N AILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           LSSQE+ TLITALG GIG+D ++ +KLRYH
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLRYH 387


>gi|160891682|ref|ZP_02072685.1| hypothetical protein BACUNI_04137 [Bacteroides uniformis ATCC 8492]
 gi|317478257|ref|ZP_07937422.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156859089|gb|EDO52520.1| hypothetical protein BACUNI_04137 [Bacteroides uniformis ATCC 8492]
 gi|316905564|gb|EFV27353.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 644

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 179/662 (27%), Positives = 295/662 (44%), Gaps = 68/662 (10%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           + +  Y  D+I+ L  ++ ++ R  MYIG     S    G++ ++ EV+DN+IDE   G 
Sbjct: 23  VSSVEYTDDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGA 82

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+      +V D GRGIP            E + ++L+ GGK++ K++K S GL
Sbjct: 83  GKRIEVTIEDSLRVSVRDYGRGIPQGK-------LVEAV-SKLNTGGKYDSKAFKKSVGL 134

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG+  VNALSS  ++R  R+G +    F  G L +   VT  +  ++GT + F P + 
Sbjct: 135 NGVGIKAVNALSSRFEVRSYRDGKVRTAIFEKGTLLSD--VTEDSTEESGTYIFFEPDAT 192

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F    F    ++  LR  ++LN+ +      +R             G+E  +       
Sbjct: 193 LFLNYSFQNQFVETLLRNYTYLNTGLTFIYNGQRIVSRH--------GLEDLLKDNMT-- 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +   I ++G      I++A    + Y E    F N      GGTH + L+  + R I
Sbjct: 243 SEGLYDIIHLKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTALKEHIARTI 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS----------- 349
             +  K+             D R G  + ++I + +P F SQTK KL S           
Sbjct: 299 KEFYNKNQEYA---------DIRNGLVAAIAIDVEEPMFESQTKTKLGSNNMWPAAPQEH 349

Query: 350 ----SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARD 397
                 V   V  F+   +  +L ++PL A+++++K+ D+   R         A  RA+ 
Sbjct: 350 KPAGPTVNKYVGDFIKTEVDNYLHKNPLVAEVMLQKIQDSEKERKAIAGVTKLARERAKK 409

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
                  L             +++ +   +F+ EGDSA GS  + R    QA+  LRGK 
Sbjct: 410 ANLHNRKLRDCRYHLSDGKGKDQETESC-IFITEGDSASGSITKSRDVNTQAVFSLRGKP 468

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LN        +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR L+
Sbjct: 469 LNSYGLTKKVVYENEEFNLLQAALNIEDG-----IETLRYNKVIVATDADVDGMHIRLLI 523

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           +TFF +  P LI  G +YI++ PL+ +   K   Y   EE     +     + EI  F  
Sbjct: 524 ITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTSYCYTEEERVKAIEELGPNPEITRF-K 582

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G IS ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   
Sbjct: 583 GLGEISPDEFKHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIINNLVIEED 641

Query: 638 LA 639
           LA
Sbjct: 642 LA 643


>gi|19909613|dbj|BAB87002.1| DNA gyrase subunit B [Methylococcus capsulatus str. Bath]
          Length = 386

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 236/389 (60%), Positives = 294/389 (75%), Gaps = 3/389 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L L I R G  Y   + +G    PL   G A + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSERLWLEICRGGRRYRQEYRDGEPLAPLAEVGPA-DTTGTTV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS  IFS  +F+Y+ L  RLRELSFLNS V+I L DKRS +       ++GGI AFV
Sbjct: 60  RFKPSPQIFSNIEFHYEILAKRLRELSFLNSGVRIELEDKRSGKN--EVFEFEGGIRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+++K PL      +Q  RD + +++AM+WND Y ENV C+TNNIPQ+DGGTHL+G R
Sbjct: 118 EHLNKNKTPLFDKVFHLQAERDGVGVEIAMQWNDSYQENVFCYTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y+E+    KK K + +GDD REG T+VLS+K+PDP+FSSQTKEKLVSSEV+
Sbjct: 178 AALTRTVNQYIEEQGLLKKQKVATVGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SVVES + + L+ +L E+P  A+ I  KV+DA+  R+AAR+AR++TRRK  LDIA LPGK
Sbjct: 238 SVVESVMAEKLNDFLLENPSIARTIANKVVDAARAREAARKAREMTRRKSALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SELF+VEGDSAGGSAKQGR R +QAILPL+GKILNVERARFDKMLSS+E
Sbjct: 298 LADCQEKDPALSELFIVEGDSAGGSAKQGRDRRSQAILPLKGKILNVERARFDKMLSSEE 357

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIII 502
           +GTLITALG GIG++ ++ +KLRYH+III
Sbjct: 358 VGTLITALGCGIGREEYNPDKLRYHRIII 386


>gi|328349741|emb|CBY89178.1| GyrB protein [Flavobacterium sp. R-38349]
          Length = 409

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 186/408 (45%), Positives = 262/408 (64%), Gaps = 7/408 (1%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-REG 143
            D+HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS  L+  +  R+G
Sbjct: 1   VDMHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSRDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            +YE  +  G    P+   G      GT VTF P   IF+    F+Y+TL  R+RELSFL
Sbjct: 61  KVYEQEYERGKALYPVKPIGETT-KRGTIVTFYPDDTIFTQTTEFSYETLSARMRELSFL 119

Query: 203 NSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR                 G++ ++ YLD++++P++   I +   +  I 
Sbjct: 120 NKGITITFTDKRELDKDGNFVSEKFHSTEGLKEYIRYLDKNREPIIAHVISMDSEKGEIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D +  +LEE+P +A+II
Sbjct: 240 GDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK VL    LPGKL+DCSE+DP + E++LVEGDS GG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPARCEVYLVEGDSXGGT 359

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           AKQGR R  Q ILPLRGKI N E+A   K+  ++EI  + TALG  IG
Sbjct: 360 AKQGRDRAFQXILPLRGKIXNXEKAMHHKVFENEEIRNIFTALGVTIG 407


>gi|27544684|dbj|BAC55037.1| DNA gyrase B subunit [Legionella brunensis]
          Length = 389

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 241/392 (61%), Positives = 303/392 (77%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+R G I+E  + NG+ D PL VTG A N TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLLIRRNGKIHEQHYRNGVPDAPLAVTGEA-NTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+V F PS++ F+  +F+YD L  RLRELSFLNS V I L D+R+ +    T  Y+GGI+
Sbjct: 60  TQVWFKPSANTFTNIEFHYDILAKRLRELSFLNSGVCIHLYDERTQKR--DTFRYEGGIQ 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+R+K P+M     +   RDNI+++LAM+WND + E + CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEHLNRNKTPIMPVVFTLLADRDNIAVELAMQWNDSFQETIFCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+E    +KK K    GDD REG T+VLS+K+ DP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRTLNTYIENEGFAKKAKVVTTGDDAREGLTAVLSVKVSDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VES V + L+ +L E+P  AK +V K++DA+  R+AARRAR++TRRKG LDIA L
Sbjct: 238 EVKAAVESLVAEKLNDFLLENPAIAKSVVGKMIDAARAREAARRAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG D +D +K+RYH+III
Sbjct: 358 SQEVATLITALGCGIGPDEYDPDKIRYHRIII 389


>gi|299141987|ref|ZP_07035121.1| DNA topoisomerase IV [Prevotella oris C735]
 gi|298576449|gb|EFI48321.1| DNA topoisomerase IV [Prevotella oris C735]
          Length = 660

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 157/563 (27%), Positives = 263/563 (46%), Gaps = 55/563 (9%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
              Q  +Y  D+I+ L  ++ V+ RP MYIG     +    G++ ++ EV+DN+IDE   
Sbjct: 14  QQEQPVAYTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLPEDGIYVLLKEVIDNSIDEFKM 73

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
              + I + +  +   +V D GRGIP            E + + L+ GGK++ K++K S 
Sbjct: 74  KAGNRIEIEVEDNLRVSVRDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFKKSV 125

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG+  VNALSS  +++  R+G + E++F  G+  +    T    ++ GT + F P 
Sbjct: 126 GLNGVGIKAVNALSSHFEVKSFRDGKVRELTFEKGVKKSD--KTLDTNDENGTYIYFEPD 183

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F+ D ++  LR  ++LNS + I    +R           + G+   ++    
Sbjct: 184 NTLFKDYSFHNDIVETMLRNYTYLNSGLTIMYNGRRIKS--------RNGLADLLNDNMT 235

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +    +   + I G      I++A    + Y E    F N      GGTH S  +  + +
Sbjct: 236 N--DGLYPIVHIIGED----IEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAK 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS---- 354
            I  +  K++            D R G  + +++ + +P F SQTK KL S+++      
Sbjct: 290 TIKEFFNKNYEYT---------DVRNGLVAAIALNVEEPVFESQTKIKLGSTQMAPDGES 340

Query: 355 ---VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA------RRARDLTRRKGVL 405
               V  F+   +  +L  HP  A++I  K+ ++   R A        R R         
Sbjct: 341 INKYVGDFIKLNVDNYLHIHPDVAEVIENKIKESERERKAMAGVTKLARERAKKANLHNR 400

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +        D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN      
Sbjct: 401 KLRDCRIHFCDAKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTK 460

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  
Sbjct: 461 KVVYENEEFNLLQAALDIEEG-----LDTLRYNKVIVATDADVDGMHIRLLIITFFLQFF 515

Query: 526 PSLIHNGFLYIIKPPLYGITRGK 548
           P LI  G +Y+++ PL+ +   +
Sbjct: 516 PELIKKGHVYVLQTPLFRVRNKR 538


>gi|295979547|dbj|BAJ07446.1| DNA gyrase subunit B [Asticcacaulis biprosthecium]
          Length = 323

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 230/323 (71%), Gaps = 17/323 (5%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DNAIDE L G+A  + V LN+DGSCTV+D+GRGIP D+H+ EG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEVLAGHATRVEVILNVDGSCTVTDDGRGIPVDIHEGEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+Q SYKVSGGLHGVGVSVVNALS +L L I R+G  + + F  G
Sbjct: 61  SAAEVIMTELHAGGKFDQNSYKVSGGLHGVGVSVVNALSDYLDLVIYRQGKKHSVRFERG 120

Query: 154 ILDNPLVVTGSAG------NDTGTEVTFLPSSD-----------IFSVQDFNYDTLQHRL 196
               PL V G A       + TGTEVTF PS              FS  DF+  TL+HRL
Sbjct: 121 ATVKPLEVIGEAPKRDDGRDYTGTEVTFFPSMAKKDAQGMTLDGTFSFIDFDRKTLEHRL 180

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           REL+FLNS V I   D R  EP E  + Y GGI  FV +LD+ K  ++++P+ ++G R+ 
Sbjct: 181 RELAFLNSGVSIRFADLREAEPYETLLHYDGGIIEFVRHLDKAKTAIIKAPVAVRGHREK 240

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           + +DLA++WND YHE +LCFTNNIPQ+DGGTHL+  R ALTR +T+Y+E S  +KK+K +
Sbjct: 241 VEVDLALQWNDSYHETMLCFTNNIPQRDGGTHLAAFRGALTRVMTAYLESSGAAKKEKVT 300

Query: 317 VIGDDCREGFTSVLSIKMPDPRF 339
           V G+D REG T VLS+K+PDP+F
Sbjct: 301 VTGEDAREGLTCVLSVKVPDPKF 323


>gi|295388302|gb|ADG03047.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 233/396 (58%), Positives = 309/396 (78%), Gaps = 3/396 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGV VSVVNALS  + L I R G+I+  ++ +G  + PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVDVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           LSSQE+ TLITALG GIG+D ++ +KLRY+ IIIMT
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYYNIIIMT 394


>gi|213855672|ref|ZP_03383912.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 432

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 207/396 (52%), Gaps = 7/396 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +              +       P   
Sbjct: 178 RFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                 G  + +     +   +G       + N IP   GGTH++GLR  L   +  + E
Sbjct: 238 FIGNFNGETEAVDW-ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                 +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S
Sbjct: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFS 355

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
            WL ++   A+ + +  + ++  R  A +    T+ 
Sbjct: 356 LWLNQNVQAAEQLAEMAIASAQRRLRADKKSGTTKN 391


>gi|58530658|dbj|BAD89283.1| DNA gyrase B [Ferrimonas marina]
 gi|58530660|dbj|BAD89284.1| DNA gyrase B [Ferrimonas marina]
 gi|58530662|dbj|BAD89285.1| DNA gyrase B [Ferrimonas marina]
 gi|58530664|dbj|BAD89286.1| DNA gyrase B [Ferrimonas marina]
          Length = 390

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 228/393 (58%), Positives = 300/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G+++E ++  G  + PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTIRRQGHVHEQTYHLGEPEAPLKVVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS  IFS   F+YD L  R+RELSFLNS V I L+D+R  +       Y+GGI+
Sbjct: 60  TSIRFWPSPTIFSDVTFHYDILAKRVRELSFLNSGVSIRLVDERDGKE--EHFCYEGGIQ 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNIS-IDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K  + Q+       R++ + +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVDFLNTNKTAINQNIFYFNSEREDGTAVEIAMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R++LTR + +Y++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRASLTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+  VE  + + L+ +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKGAVEQAMGEKLAEYLLENPAEAKMVVNKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D +D  K RYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYDPEKTRYHNIII 390


>gi|208609657|dbj|BAG72204.1| gyrase B [Methylobacterium sp. Hojyo1]
          Length = 392

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 263/392 (67%), Positives = 319/392 (81%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+WL+LRI R G  + M F +G   +PL V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTWLRLRIWRAGQEHAMEFRHGDAVSPLAVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS+D F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+E
Sbjct: 61  TEVTFLPSTDTFTMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELVYEGGVE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR K PL+  P+ ++  RD I +++A+ WND YHE VL FTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRTKSPLVSQPVVVRADRDGIGVEVALWWNDSYHETVLPFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQIT Y E S  +K++K S+ GDDCREG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQITGYAESSGIAKREKVSLTGDDCREGLTAIISVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVE+ +N+GLS WLEEHP EAK IV KV +A+  R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVENVLNEGLSNWLEEHPAEAKTIVGKVAEAAAAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGTGIG++ F+ +KLRYH+III
Sbjct: 361 SQEIGTLITALGTGIGREEFNPDKLRYHRIII 392


>gi|126035286|gb|ABN72396.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 388

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 236/391 (60%), Positives = 302/391 (77%), Gaps = 4/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSIII 388


>gi|256422122|ref|YP_003122775.1| DNA topoisomerase IV subunit B [Chitinophaga pinensis DSM 2588]
 gi|256037030|gb|ACU60574.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Chitinophaga pinensis DSM 2588]
          Length = 640

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 179/640 (27%), Positives = 287/640 (44%), Gaps = 66/640 (10%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAI 53
           M+   +    ++Y  DSI+ L   + ++ RP MYIG     S    G++ ++ EV DN I
Sbjct: 1   MATTDKKDLSAAYTEDSIRSLDWREHIRLRPGMYIGKLGDGSSMDDGIYILLKEVADNCI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE   G+   I + +      T+ D GRGIP            +V+ ++++ G K++ K+
Sbjct: 61  DEHTMGFGKQIDIRVTEHN-VTIRDYGRGIPLGK-------VVDVV-SKINTGAKYDSKA 111

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           ++ S GL+GVG   VNALSS+ ++   REG      F  G L        +     GT V
Sbjct: 112 FQKSVGLNGVGTKAVNALSSYFRVESFREGRGKVAEFERGNLTKEHKE-ANTSEPNGTLV 170

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           TF P   +F    F  + L++++    FLN+ + IS   K+           K G+   +
Sbjct: 171 TFTPDDTVFRNYRFIPEFLENQIWNYCFLNAGLTISFNGKK--------YISKNGLLDLL 222

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                  +      I ++G      I++A+   + Y E    F N      GGTHL+  R
Sbjct: 223 QRKTNEDELRYP-IIHLKGED----IEVAITHENQYGEEYYSFVNGQHTTQGGTHLAAFR 277

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS---- 349
            A  + +  + +K              D R    + +S+++ +P F SQTK KL S    
Sbjct: 278 EAFVKTLRDFYKK---------DYEATDIRASICAAISVRVQEPVFESQTKTKLGSLTVF 328

Query: 350 ---SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDL 398
                +++ V  F++  L  +L ++P  A+ + K++  +   R         A  RA+  
Sbjct: 329 ENGPSMKAFVLDFLSKHLDDFLHKNPTTAEALKKRIEQSERERKELAGIKKLANERAKKA 388

Query: 399 TRRKGVLDIASL------PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
                 L    +       GK  +  E     + +F+ EGDSA GS  + R+ E QA+  
Sbjct: 389 NLHNRKLRDCRIHLNEEVSGKDKNDLETKRLNTTIFITEGDSASGSITKSRNVETQAVFS 448

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGK LN        +  ++E   L  AL    G     +  LRY++I++ TDADVDG H
Sbjct: 449 LRGKPLNSFGLTKKIVYENEEFNLLQHALNIEEG-----LEGLRYNRIVVATDADVDGMH 503

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           IR LLLTFF +  P L+ NG LYI++ PL+ +   +   Y   +E     +       EI
Sbjct: 504 IRLLLLTFFLQFFPDLVKNGHLYILETPLFRVRNKQQTIYCYTDEERIKAIKKLGNKPEI 563

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
             F    G IS ++  NFI+D +K++ +I     +  K  
Sbjct: 564 TRF-KGLGEISPDEFANFINDDMKVEPVILSKDTHIQKLL 602


>gi|325299434|ref|YP_004259351.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Bacteroides salanitronis DSM 18170]
 gi|324318987|gb|ADY36878.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Bacteroides salanitronis DSM 18170]
          Length = 645

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 182/648 (28%), Positives = 281/648 (43%), Gaps = 86/648 (13%)

Query: 1   MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNA 52
           M +  +     +SY  ++I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN+
Sbjct: 1   MEEENELMQPTASYTEENIRHLSDMEHVRTRPGMYIGRLGDGSQAEDGIYVLMKEVIDNS 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE   G    I + L      +V D GRGIP         S  + + + L+ GGK++ K
Sbjct: 61  IDEFKMGAGKRIDIQLEEGLRVSVRDYGRGIPLG-------SLVDAV-SMLNTGGKYDTK 112

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           ++K S GL+GVG   VNALSS    R  R+G + E  F  G L +    TG    + GT 
Sbjct: 113 AFKKSVGLNGVGAKAVNALSSRFVARSVRDGQMREAIFERGNLISD--TTGPTQEENGTF 170

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P + +F    F  + ++  LR  ++LN+ + I    KR           + G+E  
Sbjct: 171 IFFEPDNTLFLNYHFRPEFIETMLRNYTYLNTGLSIYYNGKRIVS--------RNGLEDL 222

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++       P +   + ++G      I++A      Y E    F N      GGTH S  
Sbjct: 223 LNDNMTA--PGLYPIVHLKGED----IEIAFTHTAQYGEEYYSFVNGQHTTQGGTHQSAF 276

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +  L R I  +  K+   +         D R G  + ++I + +P F SQTK KL S  +
Sbjct: 277 KEHLARTIKEFYGKNLEYQ---------DIRNGLVAAIAINVIEPTFESQTKIKLGSLVM 327

Query: 353 RS------------------VVESFVNDGLSAWL--------------EEHPLEAKIIVK 380
                                V  F+ + +  +L              +E   E K I  
Sbjct: 328 APEKDSDGNPYPLSGISVNKFVGDFIKENVDNYLHKHPDVADVVLQKIQESEKERKAIAG 387

Query: 381 KVLDAS-MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
               A    + A    R L   +  L+         D       +S +F+ EGDSA GS 
Sbjct: 388 VTKIARERAKKANLHNRKLRDCRIHLND--QKASKKDEENDPRLESSIFITEGDSASGSI 445

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
            + R    QA+  LRGK LN        +  ++E   L  AL    G     ++ LRY+K
Sbjct: 446 TKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALNIEDG-----LDGLRYNK 500

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS----LQYVKD 555
           +I+ TDADVDG HIR L++TFF +  P LI  G +YI++ PL+ +   K       Y   
Sbjct: 501 VIVATDADVDGMHIRLLMITFFLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETIYCYS 560

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           EE     +   S + EI  F    G IS ++ RNFI   ++++++   
Sbjct: 561 EEERLAAIEKLSPNPEITRF-KGLGEISPDEFRNFIGKDMRLEQVSLR 607


>gi|51598299|ref|YP_072487.1| DNA topoisomerase IV subunit B [Borrelia garinii PBi]
 gi|51572870|gb|AAU06895.1| DNA topoisomerase IV [Borrelia garinii PBi]
          Length = 599

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 186/598 (31%), Positives = 276/598 (46%), Gaps = 50/598 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++  +YD   I  L  L+ ++ R  MYIG     S    G++ +I E++DN+IDE + GY
Sbjct: 1   MKTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIIDNSIDEFIMGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I +    +    + D GRGIP            E + + ++ G K+N   ++ S GL
Sbjct: 61  GNEIFIK-KENNLIAIRDYGRGIPLGK-------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS   +R  R G  +E  F  G L         + +  GT V FL  S+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGNLLESRE--MESSDKDGTYVEFLADSE 169

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    ++ D L+ R    + LN  + I+  ++            K G+  F++   +  
Sbjct: 170 IFGKYSYSEDFLKRRFFHYACLNKGLIINYNNQ--------IFESKNGLLDFLNSEIKSD 221

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L              +++ A    + Y E    F N     DGGTH +G R    R I
Sbjct: 222 DLLYDIVYYSSK-----TLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTGFREGFVRAI 276

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +++K         +    D REG  + LS+K+ DP F SQTK KL + E R  V   V
Sbjct: 277 NDFLKK---------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAREV 327

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS-- 418
              +S  L +  + AK+I KKV+D   +R      R    R+    I+    KL DC   
Sbjct: 328 QKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKE-ARERAKKISFKIPKLKDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                +  +++ +FL EGDSA GS    R    QAI  LRGK  N+      ++  ++E+
Sbjct: 387 FNDSSKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             ++ ALG         I  LRY+K++I TDAD DG HIR LLLTFF      LI NG +
Sbjct: 447 YNMMVALGI-----EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHM 501

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           YI++ PL+ +   K   Y   EE  +  +I      E+  F    G IS N+ ++FID
Sbjct: 502 YILETPLFRVRNKKITIYCYSEEEKKKAMIQLKGGYEVTRF-KGLGEISPNEFKSFID 558


>gi|290794997|gb|ADD64517.1| DNA gyrase B [Vibrio tasmaniensis]
          Length = 391

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 304/393 (77%), Gaps = 3/393 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI
Sbjct: 60  GTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG H
Sbjct: 119 QAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSSQE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNII 391


>gi|281424898|ref|ZP_06255811.1| putative DNA topoisomerase IV, B subunit [Prevotella oris F0302]
 gi|281401016|gb|EFB31847.1| putative DNA topoisomerase IV, B subunit [Prevotella oris F0302]
          Length = 660

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 158/563 (28%), Positives = 263/563 (46%), Gaps = 55/563 (9%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
              Q  +Y  D+I+ L  ++ V+ RP MYIG     +    G++ ++ EV+DN+IDE   
Sbjct: 14  QQEQPVAYTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLPEDGIYVLLKEVIDNSIDEFKM 73

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
              D I + +  +   +V D GRGIP            E + + L+ GGK++ K++K S 
Sbjct: 74  KAGDRIEIEVENNLRVSVRDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFKKSV 125

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG+  VNALSS  +++  R+G + E++F  G+  +    T    ++ GT + F P 
Sbjct: 126 GLNGVGIKAVNALSSHFEVKSFRDGKVRELTFEKGVKKSD--KTLDTNDENGTYIYFEPD 183

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F+ D ++  LR  ++LNS + I    +R           + G+   ++    
Sbjct: 184 NTLFKDYSFHNDIVETMLRNYTYLNSGLTIMYNGRRIKS--------RNGLADLLNDNMT 235

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +    +   + I G      I++A    + Y E    F N      GGTH S  +  + +
Sbjct: 236 N--DGLYPIVHIIGED----IEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAK 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS---- 354
            I  +  K++            D R G  + +++ + +P F SQTK KL S+++      
Sbjct: 290 TIKEFFNKNYEYT---------DVRNGLVAAIALNVEEPVFESQTKIKLGSTQMAPDGES 340

Query: 355 ---VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA------RRARDLTRRKGVL 405
               V  F+   +  +L  HP  A++I  K+ ++   R A        R R         
Sbjct: 341 INKYVGDFIKLNVDNYLHIHPDVAEVIENKIKESERERKAMAGVTKLARERAKKANLHNR 400

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +        D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN      
Sbjct: 401 KLRDCRIHFCDAKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTK 460

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  
Sbjct: 461 KVVYENEEFNLLQAALDIEEG-----LDTLRYNKVIVATDADVDGMHIRLLIITFFLQFF 515

Query: 526 PSLIHNGFLYIIKPPLYGITRGK 548
           P LI  G +Y+++ PL+ +   +
Sbjct: 516 PELIKKGHVYVLQTPLFRVRNKR 538


>gi|167756991|ref|ZP_02429118.1| hypothetical protein CLORAM_02540 [Clostridium ramosum DSM 1402]
 gi|167703166|gb|EDS17745.1| hypothetical protein CLORAM_02540 [Clostridium ramosum DSM 1402]
          Length = 315

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 148/316 (46%), Positives = 201/316 (63%), Gaps = 8/316 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S+YD  +IQIL+GL+AV+KRP MYIG TD   GLHH+++E++DNAIDE+L G+
Sbjct: 1   MNYMAAKSNYDESNIQILEGLEAVRKRPGMYIGSTDA-RGLHHLVWEIVDNAIDEALSGF 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGG 119
            D I VT+  D S  V+D+GRG+PT +H   G    EVI+T LHAGGKFN    YK SGG
Sbjct: 60  GDNIQVTICKDNSIKVTDHGRGMPTGMHAS-GKPTTEVILTILHAGGKFNEDGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178
           LHGVG SVVNALSSWL++ I R+G I++  F + G     L V G + N TGT + F+P 
Sbjct: 119 LHGVGASVVNALSSWLEVTIYRDGKIWQQRFEDGGSKVGKLKVIGKS-NQTGTTIHFMPD 177

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           S IFSV ++N+ T+  RL E +FL   ++I L+D+R+ +          G+ AFV YL+ 
Sbjct: 178 SSIFSVYEYNFSTISERLMESAFLLKGIKIDLVDERTGKEISYQY--DNGLTAFVEYLNY 235

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L    I I+G+ + I +D+AM++  GY E  L F N +   DGGTH +G RSALTR
Sbjct: 236 EKETLN-EIINIEGTNNEIEVDVAMQFTSGYQETTLSFVNLVRTGDGGTHETGFRSALTR 294

Query: 299 QITSYVEKSFGSKKDK 314
               Y  K    K+ +
Sbjct: 295 TFNEYARKYGLLKERQ 310


>gi|332297526|ref|YP_004439448.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Treponema brennaborense DSM 12168]
 gi|332180629|gb|AEE16317.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Treponema brennaborense DSM 12168]
          Length = 606

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 171/591 (28%), Positives = 265/591 (44%), Gaps = 50/591 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDES 56
           M +   N  YD   IQ L  L+ ++ R  MYIG     S    G++ ++ EV+DNA+DE 
Sbjct: 1   MGEKKANV-YDESKIQTLSPLEHIRLRSGMYIGRLGDGSNRSDGIYILLKEVVDNAVDEF 59

Query: 57  LEGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           + G  D I + +   GS   V D GRGIP            E + + ++ G K+N   ++
Sbjct: 60  IMGNGDRIMIDIQ--GSRVKVRDYGRGIPLGK-------VVECV-SVINTGAKYNDDVFQ 109

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            S GL+GVG   VNALSS+ K+   R G   E  F  G L +        G   GT + F
Sbjct: 110 FSVGLNGVGTKAVNALSSYFKVLSARGGQCAEAVFERGTLVSSRTGKTKGGVPDGTYIEF 169

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P ++IF   +FN + ++ RL   ++LN+ +++                 + G+   ++ 
Sbjct: 170 EPDTEIFGSYEFNMEFVEKRLWNYAYLNAGLKLVCNG--------SEYVSQNGLLDLLNS 221

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                   +      +G R    ++ A   ++ Y EN   F N     DGGTHLS  +  
Sbjct: 222 ELDG--ASLYPVGYYKGER----LEFAFTHSNAYGENYFSFVNGQETSDGGTHLSAFKEG 275

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
             + +  +  K         +   +D REG  + L +K+ DP F SQTK KL ++++RS 
Sbjct: 276 FLKGVNEFYRK---------TFKSEDVREGMAAALLVKIKDPVFESQTKNKLGNTDIRSW 326

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           + +     +  WL  +P  AK + +KV+           A     ++    I+    KL 
Sbjct: 327 IVNETKSAVDDWLHRNPETAKQLEQKVVANER-LRTELNAVKKEAKEAAKKISLNIPKLK 385

Query: 416 DCSERDPK-----KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           DC            + +F+ EGDSA GS    R    QAI  LRGK  N+   +   +  
Sbjct: 386 DCKYHFGDGDKGLNTMIFVTEGDSASGSMVGCRDPMTQAIFSLRGKPENMFGRKRADIYK 445

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           + E+  L+ ALG        D+  LRY KIII TDAD DG HIR L+LTFF      L+ 
Sbjct: 446 NAELYNLMMALGI-----ENDLAGLRYEKIIIATDADNDGFHIRNLMLTFFLGYFEELVT 500

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           +G ++I++ PL+ +   K  +Y   E   +  +       E+  F     +
Sbjct: 501 SGRVFILETPLFRVRTKKETRYCYTEAERDREMKALGAGSEVTRFKGLGEI 551


>gi|19909731|dbj|BAB87061.1| DNA gyrase subunit B [Phyllobacterium myrsinacearum]
          Length = 389

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 260/390 (66%), Positives = 326/390 (83%), Gaps = 1/390 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS WL+L+I+R+G I+EMSF +G+ D PL   G +  +TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSVWLRLKIRRQGKIHEMSFTHGVADAPLREIGDSNGETGTE 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V+FLPS++ F++ +F++ TL+HRLREL+FLNS V+I L D+R  +P E+ +FY+GG+ A+
Sbjct: 61  VSFLPSTETFTMVEFDFKTLEHRLRELAFLNSGVRILLADRRHADPVELELFYEGGLTAY 120

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR KK L+  PI I+G RD+ ++++AM WND YHENVLCFTNNIPQ+DGGTHL+G 
Sbjct: 121 VKYLDRTKKELVSEPIYIRGERDDTTVEVAMWWNDSYHENVLCFTNNIPQRDGGTHLAGF 180

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTRQ+T Y E +  +KK K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 181 RGALTRQMTGYAENTGQAKKAKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 240

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+VVES VN+ LS+WLEEHP E K++V+KV+ A+  R+AAR+ARD+T RK  L I+SLPG
Sbjct: 241 RAVVESLVNEALSSWLEEHPAEGKVLVEKVIQAASAREAARKARDIT-RKNSLSISSLPG 299

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER + D+MLSS 
Sbjct: 300 KLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERVKLDRMLSSD 359

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +IGTLI ALGT IG+D F+ +KLRYHKIII
Sbjct: 360 QIGTLILALGTSIGKDEFNPDKLRYHKIII 389


>gi|148470266|gb|ABQ66080.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 197/423 (46%), Positives = 281/423 (66%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++GN +   +  GI +
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQIYHKGIPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL         TGT + F P   I     F++D L HR REL +LN ++ I  I +   
Sbjct: 61  SPLA-ITGTSETTGTSIRFYPDLTIMETDAFSFDVLAHRFRELGYLNPALTI--ILREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+ +++ +K+ +       +   +  + +++ ++ D    E +L 
Sbjct: 118 TLREEIFHDEGGIRSFLLFVNENKRTIHDPLSFRKSLDNGSTFEVSFQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GGTH+ G R+ALTR +  ++++   +K ++  V G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGTHVRGFRAALTRVVNRFIKEKNLNKGEE--VKGEDIREGLSAIISIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+ + L    E+    A+ I  K + ++  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVSGAMETFLAESLEDAFEKQGAVARAIADKAILSAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP KSEL +VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPAKSELCIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+++  +K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSKGVEKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|35210347|dbj|BAC92685.1| gyrase B subunit [Bacillus tusciae]
          Length = 388

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 205/392 (52%), Positives = 274/392 (69%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVGVSVVNALS WL++ + REG+ Y   +  G+   PL   G   + TG
Sbjct: 1   GKGYKVSGGLHGVGVSVVNALSEWLEVEVWREGSAYRQRYSRGVPVTPLERLGPT-DRTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF P  +IF    F YD LQ RLREL+FLN+ + I L  + + + R     Y+GGI 
Sbjct: 60  TQVTFKPDPEIFEDVVFQYDILQGRLRELAFLNAGITIIL--EDARDGRRQEFAYQGGIR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +FV YL+R K+ L Q P+ I   +D++ +++A+++NDGY  ++  F NNI   +GGTH S
Sbjct: 118 SFVEYLNRSKEVLHQPPVYIAAEKDDVMVEVALQYNDGYVPSLYSFANNIHTHEGGTHES 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G +SALTR I  Y  K+   K    +V G+D REG T+++S+K+PDP+F  QTK KL +S
Sbjct: 178 GFKSALTRVINDYARKNNLLKDSDSNVTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR +VES   +    +LEE+P  A+ IV K + A+  R+AAR+AR+LTRRK  L+++SL
Sbjct: 238 EVRGIVESAFGERFVVFLEENPAVARKIVDKCITAARAREAARKARELTRRKNALEVSSL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL DCS +D  +SEL+LVEGDSAGGSAK GR R  QAILPLRGKILNVE+AR DK+LS
Sbjct: 298 PGKLWDCSSKDASESELYLVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARMDKILS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           + EI  +ITA+GTGI +  FDI++ RYHK++I
Sbjct: 358 NNEIRAIITAIGTGI-EPDFDISRARYHKVVI 388


>gi|307939346|gb|ADN95864.1| DNA gyrase B [Hymenobacter rigui]
          Length = 431

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 203/433 (46%), Positives = 285/433 (65%), Gaps = 19/433 (4%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ SYK SGGLHGVGV  VNALS+   + +KR+G+IYE  +  G+    + 
Sbjct: 1   TVLHAGGKFDKNSYKTSGGLHGVGVRXVNALSTHTHVTVKRDGHIYEQEYTIGVPQYDVR 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLI----DKRS 215
             G    + GT V F P + IF     ++Y+ +  RLRELS+LN  ++I L      +  
Sbjct: 61  QIGDTT-ERGTLVWFQPDATIFDETTTYSYERIATRLRELSYLNRGIRIILTDLRTPEDG 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            EP++   F +GG+  +V YLD  +  LM  P+ +   R  I +++A ++ND + E++  
Sbjct: 120 GEPQQNEFFSEGGVAEYVQYLDNSRTVLMHKPVYVATER-GIPVEVAFQYNDSFQEHIYS 178

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH+SG R+A+TR + +Y EKS    K K  + GDD REG T+V+S+K+ 
Sbjct: 179 YVNNINTHEGGTHVSGFRAAITRVLKAYAEKSGEVAKAKVEIQGDDFREGLTAVISVKVA 238

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +SEV   V + V + L+ +LEE+P EA++I+ KV+ A+  R AA++A
Sbjct: 239 EPKFEGQTKGKLGNSEVNGAVNTVVGEILNQYLEENPKEARVIIDKVILAAKARIAAKKA 298

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++ +RK VL   SLPGKLADCSE DP+  E++LVEGDSAGG+AKQGR+R  QAILPLRG
Sbjct: 299 REMVQRKTVLGSNSLPGKLADCSESDPEICEIYLVEGDSAGGTAKQGRNRAFQAILPLRG 358

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSF------------DINKLRYHKIIIM 503
           KILNVE+A+  ++L ++EI  +ITALG   G  +             +  KLRYHK+IIM
Sbjct: 359 KILNVEKAQEHRILENEEIRNMITALGVTFGMPADPENGIEADAKALNTAKLRYHKVIIM 418

Query: 504 TDADVDGAHIRTL 516
           T ADVDG+HIRTL
Sbjct: 419 TXADVDGSHIRTL 431


>gi|308157266|gb|ADO15560.1| DNA gyrase subunit B [Gordonia sp. hbs1]
          Length = 452

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 206/455 (45%), Positives = 278/455 (61%), Gaps = 38/455 (8%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++      
Sbjct: 1   EVIMTVLHAGGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKP- 59

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L   G A   TGT V F P   IF+    FN +T+  RL+E++FLN  + I+L D+R 
Sbjct: 60  GALEQ-GDATRKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRP 118

Query: 216 P----------------------------------EPREITMFYKGGIEAFVSYLDRHKK 241
                                              +P+  T  Y  G+  ++ +L+R K+
Sbjct: 119 QAVEAPGDANGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQ 178

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            +  + I      +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  + 
Sbjct: 179 SIHNTVIGFSAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVN 238

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  +    K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N
Sbjct: 239 KYALEKKLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCN 298

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  W E +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   D
Sbjct: 299 EHLGHWFEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSND 358

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P K E+++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA 
Sbjct: 359 PTKCEVYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAF 418

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           GTGI  D FDI+KLRYHKI++MTDADVDG+HIRTL
Sbjct: 419 GTGI-HDEFDISKLRYHKIVLMTDADVDGSHIRTL 452


>gi|211927081|dbj|BAG82793.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 390

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 239/393 (60%), Positives = 307/393 (78%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG +++ ++I+G+   PL  TG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELLIRREGKVHQQTYIHGVPQAPLAATGDT-DATG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V F PS + F+   +F YD L  RLRELSFLNS V I LIDKR  + R+    Y+GGI
Sbjct: 60  TQVRFWPSHETFTNVIEFEYDILAKRLRELSFLNSGVSIRLIDKR--DGRQDHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 RAFVEYLNKNKTPIHPTVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G RSA+TR + +Y+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRSAMTRTLNAYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKTAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +SQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 ASQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|290794995|gb|ADD64516.1| DNA gyrase B [Vibrio tasmaniensis]
          Length = 393

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 304/393 (77%), Gaps = 3/393 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI
Sbjct: 60  GTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG H
Sbjct: 119 QAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSSQE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNII 391


>gi|33590316|gb|AAQ22698.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 387

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 230/390 (58%), Positives = 300/390 (76%), Gaps = 4/390 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL + G     TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGETE-QTGTRVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GGI+AFV 
Sbjct: 60  WPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 FLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 358 ATLITALGCGIGRDEYNPDKLRYHSIIIMT 387


>gi|317504321|ref|ZP_07962308.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
           DSM 15606]
 gi|315664572|gb|EFV04252.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
           DSM 15606]
          Length = 660

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 161/563 (28%), Positives = 261/563 (46%), Gaps = 55/563 (9%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
                 +Y  D+I+ L  ++ V+ RP MYIG     +    G++ ++ EV+DN+IDE   
Sbjct: 14  QQEPTVAYTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLPEDGIYVLLKEVVDNSIDEFKM 73

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
              D I + +  +   +V D GRGIP            E + + L+ GGK++ K++K S 
Sbjct: 74  KAGDRIEIEVEDNLRVSVRDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFKKSV 125

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG+  VNALSS  +++  R+G + E++F  G+  N   VT    ++ GT + F P 
Sbjct: 126 GLNGVGIKAVNALSSHFEVKSFRDGKVRELTFEKGVKLND--VTLETDDENGTFIYFEPD 183

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             +F    F+ D ++  LR  ++LNS + I    +R           + G+   ++    
Sbjct: 184 KSLFKDYSFHNDIVETMLRNYTYLNSGLTIMYNGRRIKS--------RNGLADLLNDTMT 235

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +    +   + I G      I++A    + Y E    F N      GGTH S  +  + +
Sbjct: 236 N--DGLYPIVHIVGED----IEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAK 289

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS---- 354
            I  +  K++            D R G  + ++I + +P F SQTK KL S+++      
Sbjct: 290 TIKEFYNKNYEYT---------DVRNGLVAAIAINVEEPVFESQTKIKLGSTQMAPDGES 340

Query: 355 ---VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA------RRARDLTRRKGVL 405
               V  FV   +  +L  HP  A++I  K+ ++   R A        R R         
Sbjct: 341 INKYVGDFVKQNVDNYLHIHPDVAEVIENKIKESEKERKAMAGVTKLARERAKKANLHNR 400

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            +        D      + S +F+ EGDSA GS  + R    QA+  LRGK LN      
Sbjct: 401 KLRDCRIHFCDAKNDRKEDSSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTK 460

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  
Sbjct: 461 KVVYENEEFNLLQAALDIEDG-----LDSLRYNKVIVATDADVDGMHIRLLIITFFLQFF 515

Query: 526 PSLIHNGFLYIIKPPLYGITRGK 548
           P LI  G +Y+++ PL+ +   +
Sbjct: 516 PELIKKGHVYVLQTPLFRVRNKR 538


>gi|281422343|ref|ZP_06253342.1| putative DNA topoisomerase IV, B subunit [Prevotella copri DSM
           18205]
 gi|281403574|gb|EFB34254.1| putative DNA topoisomerase IV, B subunit [Prevotella copri DSM
           18205]
          Length = 669

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 154/564 (27%), Positives = 259/564 (45%), Gaps = 57/564 (10%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
              Q   Y  D+I+ L  ++ V+ RP MYIG     +    G++ ++ EV+DN+IDE   
Sbjct: 23  QEQQPVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLPEDGIYVLLKEVVDNSIDEFKM 82

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G    + + +  +   +V D GRGIP            E + + L+ GGK++ K++K S 
Sbjct: 83  GAGARLEIDIEDNLRVSVRDYGRGIPQGK-------LVEAV-SVLNTGGKYDSKAFKKSV 134

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  +++  R+G +  + F  GIL +         ++ GT + F P 
Sbjct: 135 GLNGVGVKAVNALSSHFEVKSYRDGKVRHLKFEKGILKSD--TMEDTEDENGTFIFFEPD 192

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F+ D ++  LR  ++LN+ + I    +R             G++  +S    
Sbjct: 193 NTLFKNYSFHDDFVETMLRNYTYLNTGLTIMHNGRRILSRH--------GLQDLLSDNMT 244

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +    +   + ++G      I++A    + Y E    F N      GGTH S  +  + +
Sbjct: 245 N--EGLYDIVHMKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAK 298

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS---- 354
            I  +  K   +          D R G  + ++I + +P F SQTK KL S+ +      
Sbjct: 299 TIKEFYGKYEYA----------DIRNGLVAAIAINVEEPVFESQTKIKLGSTTMTPNGGE 348

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-------RKGVLDI 407
            +  +V D L   ++ +    K + + + +     +  R+A            +K  L  
Sbjct: 349 TINKYVGDFLKKEVDNYLHIHKDVAEVLENKIKESERERKAMAGVTKLARERAKKANLHN 408

Query: 408 ---ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
                     +D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 409 RKLRDCRIHFSDAKNERKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 468

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF + 
Sbjct: 469 KKVVYENEEFNLLQAALDIEDG-----LDSLRYNKVIVATDADVDGMHIRLLIITFFLQF 523

Query: 525 MPSLIHNGFLYIIKPPLYGITRGK 548
            P LI  G +Y+++ PL+ +   +
Sbjct: 524 FPDLIKKGHVYVLQTPLFRVRNKR 547


>gi|254880970|ref|ZP_05253680.1| DNA topoisomerase IV subunit B [Bacteroides sp. 4_3_47FAA]
 gi|294777378|ref|ZP_06742829.1| putative DNA topoisomerase [Bacteroides vulgatus PC510]
 gi|319639978|ref|ZP_07994705.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_1_40A]
 gi|254833763|gb|EET14072.1| DNA topoisomerase IV subunit B [Bacteroides sp. 4_3_47FAA]
 gi|294448446|gb|EFG16995.1| putative DNA topoisomerase [Bacteroides vulgatus PC510]
 gi|317388256|gb|EFV69108.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_1_40A]
          Length = 625

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 179/659 (27%), Positives = 291/659 (44%), Gaps = 65/659 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           N     Y  D+I+ L  ++ V+ RP MYIG     S    G++ ++ E++DN+IDE    
Sbjct: 9   NNPAVEYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHAEDGIYVLLKEIIDNSIDEFKMQ 68

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I + +  +   +V D GRGIP            E + + L+ GGK++ K++K S G
Sbjct: 69  AGKKIEIIIEENLRVSVRDYGRGIPQGK-------LIEAV-SVLNTGGKYDSKAFKKSVG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVGV  VNALSS  ++R  R+G +   +F  G L      T     + GT + F P +
Sbjct: 121 LNGVGVKAVNALSSRFEVRSYRDGKVRIATFAKGDLLT--DTTQDTTEENGTYIFFEPDN 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F    F  + ++  LR  ++LN+ + I    +R           + G+   ++     
Sbjct: 179 LLFENYSFRPEFVETMLRNYTYLNTGLAIIYNGQRI--------LSRNGLVDLLNDNMTA 230

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +   I ++G      I++A      Y E    F N      GGTH S  +  + R 
Sbjct: 231 --VGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIART 284

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS----- 354
           I  Y  K+             D R G  + +++ + +P F SQTK KL S+ +       
Sbjct: 285 IKEYFNKNMDYA---------DIRNGLVAAIAVNVEEPLFESQTKIKLGSTNMAPGGPTV 335

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGV 404
              V  FV   +  +L +H   A ++++K+ ++   R         A  RA+        
Sbjct: 336 NKFVGDFVKTEVDNYLHKHTDVADVMLQKIQESEKERKAIAGVTKLARERAKKANLHNRK 395

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L        L D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 396 LRDCRF--HLNDAKGDKKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLT 453

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     +  LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 454 KKIVYENEEFNLLQAALNIEDG-----MEGLRYNKVIVATDADVDGMHIRLLLITFFLQF 508

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            P LI  G +YI++ PL+ +   K       Y   EE     +   S + EI  F    G
Sbjct: 509 FPDLIKKGHVYILQTPLFRVRNRKKGVYETVYCYSEEERVAAIERLSPNPEITRF-KGLG 567

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
            IS ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   +A
Sbjct: 568 EISPDEFKHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIIDNLVVEEDIA 625


>gi|156901546|gb|ABU96763.1| GyrB [Escherichia coli]
          Length = 389

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 237/392 (60%), Positives = 301/392 (76%), Gaps = 4/392 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGT 59

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+
Sbjct: 60  MVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A L
Sbjct: 238 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SQEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|147917467|gb|ABQ52586.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 389

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 231/390 (59%), Positives = 305/390 (78%), Gaps = 3/390 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 2   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQ 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AF
Sbjct: 61  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAF 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 120 VDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 180 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 240 VKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 300 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 359

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 360 QEVATLITALGCGIGRDEYNPDKLRYHNII 389


>gi|22091038|dbj|BAC06810.1| gyrase B [Klebsiella pneumoniae]
 gi|22091040|dbj|BAC06811.1| gyrase B [Klebsiella pneumoniae]
          Length = 390

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+  +++  + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|270295220|ref|ZP_06201421.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274467|gb|EFA20328.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 644

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 179/662 (27%), Positives = 295/662 (44%), Gaps = 68/662 (10%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           + +  Y  D+I+ L  ++ ++ R  MYIG     S    G++ ++ EV+DN+IDE   G 
Sbjct: 23  VSSVEYTDDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGA 82

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+      +V D GRGIP            E + ++L+ GGK++ K++K S GL
Sbjct: 83  GKRIEVTIEDSLRVSVRDYGRGIPQGK-------LVEAV-SKLNTGGKYDSKAFKKSVGL 134

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG+  VNALSS  ++R  R+G +    F  G L +   VT  +  ++GT + F P + 
Sbjct: 135 NGVGIKAVNALSSRFEVRSYRDGKVRIAIFEKGTLLSD--VTEDSTEESGTYIFFEPDAT 192

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F    F    ++  LR  ++LN+ +      +R             G+E  +       
Sbjct: 193 LFLNYSFQNQFVETLLRNYTYLNTGLTFIYNGQRIVSRH--------GLEDLLKDNMT-- 242

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +   I ++G      I++A    + Y E    F N      GGTH + L+  + R I
Sbjct: 243 SEGLYDIIHLKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTALKEHIARTI 298

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS----------- 349
             +  K+             D R G  + ++I + +P F SQTK KL S           
Sbjct: 299 KEFYNKNQEYA---------DIRNGLVAAIAIDVEEPMFESQTKTKLGSNNMWPAAPQEH 349

Query: 350 ----SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARD 397
                 V   V  F+   +  +L ++PL A+++++K+ D+   R         A  RA+ 
Sbjct: 350 KPAGPTVNKYVGDFIKTEVDNYLHKNPLVAEVMLQKIQDSEKERKAIAGVTKLARERAKK 409

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
                  L             +++ +   +F+ EGDSA GS  + R    QA+  LRGK 
Sbjct: 410 ANLHNRKLRDCRYHLSDGKGKDQETESC-IFITEGDSASGSITKSRDVNTQAVFSLRGKP 468

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LN        +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR L+
Sbjct: 469 LNSYGLTKKVVYENEEFNLLQAALNIEDG-----IETLRYNKVIVATDADVDGMHIRLLI 523

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           +TFF +  P LI  G +YI++ PL+ +   K   Y   EE     +     + EI  F  
Sbjct: 524 ITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTSYCYTEEERVKAIEELGPNPEITRF-K 582

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G IS ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   
Sbjct: 583 GLGEISPDEFKHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIINNLVIEED 641

Query: 638 LA 639
           LA
Sbjct: 642 LA 643


>gi|23978239|dbj|BAC21114.1| DNA gyrase B subunit [Phormidium sp. IAM M-99]
          Length = 391

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 184/390 (47%), Positives = 261/390 (66%), Gaps = 2/390 (0%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN++DE+L GY   I +++N DGS TV+D+GRGIPT +H + G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSVDEALAGYCKAIDISINADGSVTVTDDGRGIPTGIHPKTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVG+SVVNALS W+++ + RE  ++   F  GI  
Sbjct: 62  ETVMTILHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVTVWREKKVHLQRFERGIAM 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L V       TGT VTFLP + IF     F+Y TL  RLREL++LN  V+I   D R 
Sbjct: 122 GELQVEPYPQARTGTSVTFLPDASIFTETTKFDYTTLSGRLRELAYLNGGVRIKFADHRE 181

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVL 274
              RE   FY+GGI   +SY++R K+PL +  I + G R+ I +++A++W  D Y++N++
Sbjct: 182 GSEREDVYFYEGGIREDISYMNREKQPLHEEVIFVSGERNGIQVEVALQWCSDAYNDNII 241

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G++ REG T+V+S+K+
Sbjct: 242 GFANNIRTVDGGTHLEGLKAVLTRTLNTIARKRNKIKENESNLAGENIREGLTAVISVKV 301

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP F  QTK KL ++EVR +V+S V + L+ +LE  P  +  I++K + A    +AAR 
Sbjct: 302 PDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPNVSDAIIEKAVQAFKAAEAARH 361

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           AR++ RRK VL+ ++LPGKLADC+ RDP +
Sbjct: 362 AREMVRRKSVLESSTLPGKLADCASRDPSE 391


>gi|84310538|gb|ABC55417.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 390

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 190/392 (48%), Positives = 276/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G ++   F  G+    L V G     TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGDTE-VTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNDYCYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R ++ + + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH 
Sbjct: 120 KSYVEHLNRSREVVHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  ++   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++
Sbjct: 240 SEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVV 390


>gi|126035270|gb|ABN72388.1| gyrase B subunit [Enterobacter cloacae]
          Length = 389

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 237/392 (60%), Positives = 303/392 (77%), Gaps = 4/392 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYTHGVPQAPLAVTGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           QE+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSIIIM 389


>gi|22091026|dbj|BAC06804.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGET-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|150003803|ref|YP_001298547.1| DNA topoisomerase IV subunit B [Bacteroides vulgatus ATCC 8482]
 gi|149932227|gb|ABR38925.1| DNA topoisomerase IV subunit B [Bacteroides vulgatus ATCC 8482]
          Length = 625

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 179/659 (27%), Positives = 291/659 (44%), Gaps = 65/659 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           N     Y  D+I+ L  ++ V+ RP MYIG     S    G++ ++ E++DN+IDE    
Sbjct: 9   NNPAVEYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHAEDGIYVLLKEIIDNSIDEFKMQ 68

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I + +  +   +V D GRGIP            E + + L+ GGK++ K++K S G
Sbjct: 69  AGKKIEIIIEENLRVSVRDYGRGIPQGK-------LIEAV-SVLNTGGKYDSKAFKKSVG 120

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVGV  VNALSS  ++R  R+G +   +F  G L      T     + GT + F P +
Sbjct: 121 LNGVGVKAVNALSSRFEVRSYRDGKVRIATFAKGDLLT--DTTQDTTEENGTYIFFEPDN 178

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F    F  + ++  LR  ++LN+ + I    +R           + G+   ++     
Sbjct: 179 LLFENYSFRPEFVETMLRNYTYLNTGLAIIYNGQRI--------LSRNGLVDLLNDNMTA 230

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +   I ++G      I++A      Y E    F N      GGTH S  +  + R 
Sbjct: 231 --VGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHMART 284

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS----- 354
           I  Y  K+             D R G  + +++ + +P F SQTK KL S+ +       
Sbjct: 285 IKEYFNKNMDYA---------DIRNGLVAAIAVNVEEPLFESQTKIKLGSTNMAPGGPTV 335

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRARDLTRRKGV 404
              V  FV   +  +L +H   A ++++K+ ++   R         A  RA+        
Sbjct: 336 NKFVGDFVKTEVDNYLHKHTDVADVMLQKIQESEKERKAIAGVTKLARERAKKANLHNRK 395

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L        L D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 396 LRDCRF--HLNDAKGDKKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLT 453

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     +  LRY+K+I+ TDADVDG HIR LL+TFF + 
Sbjct: 454 KKIVYENEEFNLLQAALNIEDG-----MEGLRYNKVIVATDADVDGMHIRLLLITFFLQF 508

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
            P LI  G +YI++ PL+ +   K       Y   EE     +   S + EI  F    G
Sbjct: 509 FPDLIKKGHVYILQTPLFRVRNRKKGVYETVYCYSEEERIAAIERLSPNPEITRF-KGLG 567

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
            IS ++ ++FI   ++++++      +  K  +E  +       ++    N+ +   +A
Sbjct: 568 EISPDEFKHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIIDNLVVEEDIA 625


>gi|161085586|dbj|BAF93880.1| DNA gyrase B [Sporosarcina sp. YM9-109]
          Length = 391

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 199/393 (50%), Positives = 281/393 (71%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS   ++ ++R+G ++ + F  GIL + L V G   ++TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEETEVYVRRDGKVHFIKFERGILSHELEVIGET-DETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F    +IF+    + Y+ L HRLREL++LN  ++IS+ D+R  E R  T +Y+GGI
Sbjct: 60  TRTRFKADPEIFTETTVYEYEILAHRLRELAYLNRGLRISITDEREEENRTDTFYYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+++K+P+ + PI I+G +D ISI++AM++N GY EN+  F NNI   +GGTH 
Sbjct: 120 KSYVEHLNKNKEPIHEVPIFIEGEKDGISIEIAMQYNSGYAENLFSFANNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR +  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 SGFKTALTRVVNDYARKNGMLKEADPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV ++  +  ++G   +L E+P+ A++++ K L A+  R AA+ AR+LTRRK  L+++S
Sbjct: 240 SEVSTITNALFSEGFQRFLLENPVTARMVIDKSLMAARARIAAKNARELTRRKSALEVSS 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS R+P  SEL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 300 LPGKLADCSSRNPAISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            + EI  +ITALGTGIG D FD++K RYHKI+I
Sbjct: 360 GNAEIRMMITALGTGIG-DEFDLSKARYHKIVI 391


>gi|302344829|ref|YP_003813182.1| DNA topoisomerase IV subunit B [Prevotella melaninogenica ATCC
           25845]
 gi|302149357|gb|ADK95619.1| DNA topoisomerase IV subunit B [Prevotella melaninogenica ATCC
           25845]
          Length = 652

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 153/573 (26%), Positives = 259/573 (45%), Gaps = 64/573 (11%)

Query: 1   MSDNIQNS-------SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVL 49
           M  +   +       SY  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+
Sbjct: 1   MDKSTATNPQSSTPVSYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVI 60

Query: 50  DNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           DN+IDE      D I + +  +   +V D GRGIP            E + + L+ GGK+
Sbjct: 61  DNSIDEFKMNAGDRIEIDVEDNLRVSVRDYGRGIPQGK-------LVEAV-SVLNTGGKY 112

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           + K++K S GL+GVGV  VNALS+  +++  R+G + E+SF  G L +    T  + ++ 
Sbjct: 113 DSKAFKKSVGLNGVGVKAVNALSAHFEVKSFRDGKVRELSFEKGNLQSD--KTKKSADEN 170

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + F P + +F    F+ D ++  LR  ++LN+ + I    +R             G+
Sbjct: 171 GTYIYFEPDATLFKHYSFHDDIVEEMLRNYTYLNTGLTIMYNGRRILSRH--------GL 222

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  ++         +   + ++G      I++A    + Y E    F N      GGTH 
Sbjct: 223 KDLLTDNMTV--DPLYPIVHMKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQ 276

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +  +  + + I  +  K              D R G  + ++I + +P F SQTK KL S
Sbjct: 277 TAFKEHIAKTIKEFFGKYEY----------GDIRNGLVAAIAINVEEPVFESQTKIKLGS 326

Query: 350 SEVRS-----------VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           +++              +++ V++ L    E+     +  +K+            +    
Sbjct: 327 TQMSPDGESINKYVGDFIKTNVDNYLHIHKEDFTDILENKIKETERERKAMAGVTKLARE 386

Query: 399 TRRKGVLDI---ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
             +K  L             D      ++S +F+ EGDSA GS  + R    QA+  LRG
Sbjct: 387 RAKKANLHNRKLRDCRVHYCDVKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRG 446

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K LN        +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR 
Sbjct: 447 KPLNCFGLTKKVVYENEEFNLLQAALDIEDG-----LDSLRYNKVIVATDADVDGMHIRL 501

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
           L++TFF +  P LI  G +Y+++ PL+ +   +
Sbjct: 502 LIITFFLQFFPELIKKGHVYVLQTPLFRVRNRR 534


>gi|84310536|gb|ABC55416.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 390

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 191/392 (48%), Positives = 276/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+   F  G+    L V G     TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDTE-VTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R ++ + + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH 
Sbjct: 120 KSYVEHLNRSREVIHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  ++   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++
Sbjct: 240 SEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVV 390


>gi|22091020|dbj|BAC06801.1| gyrase B [Enterobacter aerogenes]
          Length = 390

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 234/393 (59%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+  +++  + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQIYEHGVPQAPLAVTGETE-STG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|23978247|dbj|BAC21116.1| DNA gyrase B subunit [Stanieria cyanosphaera str. PCC 7437]
          Length = 393

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 188/390 (48%), Positives = 263/390 (67%), Gaps = 4/390 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I + LN DGS  V+D+GRGIPT +H + G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHIEIELNADGSVRVTDDGRGIPTGIHPKTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVGVSVVNALS W+++ + R+  I+   +  GI  
Sbjct: 62  ETVMTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRDQKIHTQRYERGIPS 121

Query: 157 NPLVVTGSA--GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDK 213
             LVV  +      TGT V F P + IF+    F Y+ L  RLREL++LN+ V+I+  D 
Sbjct: 122 GDLVVQANIQEPQRTGTAVHFFPDTKIFTETIHFEYNVLAGRLRELAYLNAGVKITFTDH 181

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHEN 272
           R  E R+   FY+GGI+ +V+Y+ R K+PL Q  I +QG ++ ++I++A++W  D +++N
Sbjct: 182 RIEETRQEIYFYEGGIKEYVTYMTREKEPLHQDIIYVQGEKNGVNIEVALQWCVDAFNDN 241

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +L F NNI   DGGTHL GL++ LTR I     K    K+++ ++ G++ REG T V+S+
Sbjct: 242 LLGFANNIRTIDGGTHLEGLKTVLTRTINDIARKRNKIKENESNLGGENVREGLTGVISV 301

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP F  QTK KL ++EVR +V+S V + L+ +LE +P  A  +++K + A    +AA
Sbjct: 302 KVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLNEYLEFNPQVADSVIEKAVQAFKAAEAA 361

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDP 422
           RRAR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 RRARELVRRKSVLESSPLPGKLADCSSRDP 391


>gi|53148437|dbj|BAD52246.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148439|dbj|BAD52247.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148441|dbj|BAD52248.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148443|dbj|BAD52249.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148445|dbj|BAD52250.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148447|dbj|BAD52251.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148449|dbj|BAD52252.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148451|dbj|BAD52253.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148453|dbj|BAD52254.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
          Length = 391

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 226/394 (57%), Positives = 301/394 (76%), Gaps = 4/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-STG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  THIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K P+          R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKTPVNSQVFHFNVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G RS+LTR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+
Sbjct: 298 LPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMI 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           SSQE+GTLITALG GIG++ ++I+KLRYH IIIM
Sbjct: 358 SSQEVGTLITALGCGIGREEYNIDKLRYHNIIIM 391


>gi|148470288|gb|ABQ66091.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 196/423 (46%), Positives = 281/423 (66%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++GN +   +  GI +
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQIYHKGIPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL         TGT + F P   I     F++D L HR REL +LN ++ I  I +   
Sbjct: 61  SPLA-ITGTSETTGTSIRFYPDLTIMETDAFSFDVLAHRFRELGYLNPALTI--ILREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+ +++ +K+ +       +   +  + +++ ++ D    E +L 
Sbjct: 118 TLREEIFHDEGGIRSFLLFVNENKRTIHDPLSFRKSLDNGSTFEVSFQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GGTH+ G R+ALTR +  ++++   +K ++  V G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGTHVRGFRAALTRVVNRFIKEKNLNKGEE--VKGEDIREGLSAIISIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+ + L    E+    A+ I  K + ++  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVSGAMETFLAESLEDAFEKQGAVARAIADKAILSAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E D  KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDSAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+++  +K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSKGVEKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|33590332|gb|AAQ22706.1| DNA gyrase subunit B [Photorhabdus temperata subsp. khanii]
 gi|33590340|gb|AAQ22710.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 386

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 229/389 (58%), Positives = 300/389 (77%), Gaps = 4/389 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    YKGG
Sbjct: 60  GTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYKGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRY 497
           LSSQE+ TLITALG GIG+D ++ +KLRY
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLRY 386


>gi|82940538|emb|CAJ44277.1| gyrase B protein [Vibrio kanaloae]
          Length = 392

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 303/393 (77%), Gaps = 3/393 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI
Sbjct: 60  GTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG H
Sbjct: 119 QAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSSQE+ TLITALG GIG+D ++ +KLRYH I 
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIH 391


>gi|83017295|dbj|BAE53565.1| DNA gyrase B [Microbulbifer maritimus]
          Length = 389

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 230/392 (58%), Positives = 297/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E +F +G+   PL V G   + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLTIRRGGKVHEQTFHHGVPQAPLAVVGDT-DSTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+V F PS++ FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TKVHFKPSAETFSNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EIYEYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQNQREDGIAVEVALQWNDSFQENIYCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+EK    KKDK S  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNNYIEKEGVGKKDKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHYFNDYLLENPQEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  FD NKLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFDPNKLRYHSIII 389


>gi|198042706|gb|ACH81178.1| GyrB [Vibrio sp. UST000620-026]
          Length = 376

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 226/378 (59%), Positives = 289/378 (76%), Gaps = 3/378 (0%)

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    P
Sbjct: 1   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L V G   + TGTE+ F PS + FS   F+YD L  RLRELSFLNS V I LID+R  E 
Sbjct: 61  LAVIGDT-DKTGTEIRFWPSEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EED 118

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFT 277
           +     ++GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFT
Sbjct: 119 KSDHFMFEGGIQAFVDHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFT 178

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP
Sbjct: 179 NNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDP 238

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  + + LS +L E+P EAK +  K++DA+  RDAAR+AR+
Sbjct: 239 KFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKARE 298

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 299 MTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 358

Query: 458 LNVERARFDKMLSSQEIG 475
           LNVE+ARFDKMLSSQE+ 
Sbjct: 359 LNVEKARFDKMLSSQEVA 376


>gi|126035342|gb|ABN72424.1| gyrase B subunit [Shigella sonnei]
          Length = 389

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 236/392 (60%), Positives = 301/392 (76%), Gaps = 4/392 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGT 59

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+
Sbjct: 60  MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A L
Sbjct: 238 EVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SQEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|126666920|ref|ZP_01737896.1| DNA topoisomerase IV subunit B [Marinobacter sp. ELB17]
 gi|126628636|gb|EAZ99257.1| DNA topoisomerase IV subunit B [Marinobacter sp. ELB17]
          Length = 557

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 180/491 (36%), Positives = 267/491 (54%), Gaps = 10/491 (2%)

Query: 83  IPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
           +P D+HKEEG+   E+I++RLHAGGKF++ +Y  SGGLHGVGVSVVNALS+ L++ I+R 
Sbjct: 1   MPVDMHKEEGVPGVELILSRLHAGGKFSEGNYSFSGGLHGVGVSVVNALSTHLEVLIRRN 60

Query: 143 GNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           G ++ M+F NG     L V  S    +TGT + F P +  F   +F+   L+H LR  + 
Sbjct: 61  GQVHRMTFANGDKVTELEVVDSCGKRNTGTRLKFTPDTKYFDSANFSVSRLRHNLRAKAV 120

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           L   + ++   +++ E       Y+ G+  ++       + +   P     S +   +D 
Sbjct: 121 LCPGLTVTFSQEKTGEK--DEWCYQDGLRDYLRISLAGSEVVPLEPFTGSFSGNTEIVDW 178

Query: 262 AMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           A++W  DG       + N IP   GGTH++GLR+ L   +  + E      +    +  +
Sbjct: 179 AIQWLPDGGDAVAESYVNLIPTAQGGTHVNGLRTGLLEAMRDFCEFRSLLPRG-IKLSPE 237

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D  E    VLS KM +P+FS QTKE+L S +  + +   V D  S WL +H   A+I+ +
Sbjct: 238 DIWERVVYVLSFKMQEPQFSGQTKERLSSRQAAAFISGVVKDAFSLWLNQHTDVAEILAE 297

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
             +  +       +A     RK +    +LPGKLADCS  D  +SELFLVEGDSAGGSAK
Sbjct: 298 LFISNAQ---RRLKASKKVARKRITSGPALPGKLADCSGSDTARSELFLVEGDSAGGSAK 354

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           Q R RE QA++PL+GKILN       ++L+SQEI  +  A+G   G D  ++  LRY+K+
Sbjct: 355 QARDREFQAVMPLKGKILNTWEVDSSEVLASQEIHDIAVAIGVDPGSD--ELAGLRYNKV 412

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
            I+ DAD DG HI TLL   F +    ++  G +++  PPLY +  GK   Y  DE   +
Sbjct: 413 CILADADSDGLHIATLLCALFVKHFRPVVAAGHVFVAMPPLYRVDLGKQTFYALDESEKQ 472

Query: 561 DYLINQSLSEE 571
             +   +    
Sbjct: 473 GIIDRLAAENS 483



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           ++D + +   +G +S+ R+KGLGEMN  QL ETT+ PDTR L+ + I D    D     L
Sbjct: 474 IIDRLAAENSRGKVSVTRFKGLGEMNPLQLRETTMAPDTRRLVMLTIADGDDTDSCMDML 533

Query: 781 MGDEVEP-RREFIQ 793
           +G +  P RR +++
Sbjct: 534 LGKKRAPDRRAWLE 547


>gi|78096537|emb|CAJ40943.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 386

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 229/388 (59%), Positives = 293/388 (75%), Gaps = 2/388 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TG+EV F
Sbjct: 1   VSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGSEVRF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS  IF+   ++Y+ L  RLRELSFLNS V I L D+R          Y+GGI+AFV Y
Sbjct: 61  WPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEY 118

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+A
Sbjct: 119 LNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 179 LTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLA
Sbjct: 239 VEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+G
Sbjct: 299 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 358

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIM 503
           TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 359 TLITALGCGIGRDEYNPDKLRYHNIIIM 386


>gi|33590312|gb|AAQ22696.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 386

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 228/389 (58%), Positives = 298/389 (76%), Gaps = 4/389 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL + G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGETE-QTG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GGI
Sbjct: 60  TRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYH 498
           SSQE+ TLITALG GIG+D ++ +KLRYH
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYH 386


>gi|22091024|dbj|BAC06803.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 303/393 (77%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L+E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSDYLQENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|22091022|dbj|BAC06802.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 303/393 (77%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L+E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSDYLQENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|82940554|emb|CAJ44285.1| gyrase B protein [Vibrio tapetis]
          Length = 395

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 235/395 (59%), Positives = 305/395 (77%), Gaps = 3/395 (0%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  + L I R+G+ ++ ++ +G  D PL  TG    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGATGDTE- 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT + F PS + F+   F+Y+ L  RLRELSFLNS V I LID+R  E +     Y+G
Sbjct: 60  KTGTIIRFWPSEETFTNVHFHYEILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFCYEG 118

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           G +AFV YL+ +K P++Q        R++ IS+++AM+WNDGY EN+ CFTNNIPQ+DGG
Sbjct: 119 GTQAFVDYLNTNKTPIIQKVFHFDYEREDGISVEVAMQWNDGYQENIFCFTNNIPQRDGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+K
Sbjct: 179 THLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFSSQTKDK 238

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD
Sbjct: 239 LVSSEVKSAVESAMGEKLSEFLIENPSEAKIVCSKIIDAARARDAARKAREMTRRKGALD 298

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 299 LAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 358

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           KMLSSQE+ TLITALG GIG+D ++ +KLRYH I 
Sbjct: 359 KMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIH 393


>gi|126035358|gb|ABN72432.1| gyrase B subunit [Vibrio cholerae]
          Length = 387

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 231/389 (59%), Positives = 301/389 (77%), Gaps = 3/389 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV+
Sbjct: 60  FWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVT 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 HLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 GALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 239 SAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 299 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 358

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIII 502
           + TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 VATLITALGCGIGRDEYNPDKLRYHNIII 387


>gi|261211527|ref|ZP_05925815.1| topoisomerase IV subunit B [Vibrio sp. RC341]
 gi|260839482|gb|EEX66108.1| topoisomerase IV subunit B [Vibrio sp. RC341]
          Length = 551

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 188/505 (37%), Positives = 278/505 (55%), Gaps = 10/505 (1%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+H EE +S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R+G +
Sbjct: 2   DIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQV 61

Query: 146 YEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
           YE++F +G     L VTG+ G  +TGT V F P +  F   +F+   L + LR  + L  
Sbjct: 62  YEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFSVSRLVNNLRAKAVLCP 121

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA-M 263
            ++I   DK      E    Y+ G++ +++   +    L + P   + +    +   A +
Sbjct: 122 GLEIIFTDK--VNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAATWAVI 179

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
              +G       + N IP   GGTH++GLR  L   +  + E      +    + G+D  
Sbjct: 180 WLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVF 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           +    VLSIKM DP+F+ QTKE+L S +  + V   V D  S WL E P  A+ + +  +
Sbjct: 239 DRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCI 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
             +  R    RA     RK +    +LPGKL DC+ +D  ++ELFLVEGDSAGGSAKQ R
Sbjct: 299 ANAHSR---MRASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQAR 355

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            RE QA++PLRGKILN      D++L+SQE+  +  ++  GI  D+ ++  LRY K+ I+
Sbjct: 356 DREFQAVMPLRGKILNTWEVSADQVLASQEVHDI--SVALGIDPDNDNLEALRYGKVCIL 413

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
            DAD DG HI TLL   F R   +L+  G +Y+  PPLY I  GK + Y  D++  E  L
Sbjct: 414 ADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVL 473

Query: 564 INQSLSEEIELFCDSKGVISKNDLR 588
              S  +        KG+   N L+
Sbjct: 474 ERLSQKKAKVNVQRFKGLGEMNPLQ 498



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 274 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQD 333

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 334 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 381

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  +      +Y ++             +  +   +      +   
Sbjct: 382 ASQEVHDISVALGIDPDNDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 441

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 442 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 501

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 502 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRTWLQRN 545


>gi|332829189|gb|EGK01853.1| hypothetical protein HMPREF9455_02001 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 617

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 173/624 (27%), Positives = 282/624 (45%), Gaps = 61/624 (9%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAI 53
           M +        +Y  D I+ L   + +++RP MYIG     S    G++ ++ EVLDN+I
Sbjct: 1   MEEEKIELPEVNYSDDDIKTLDWQEHIRRRPGMYIGKLGDGSSADDGIYVLLKEVLDNSI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE + GY   I V +  +G   V D+GRG+P    K+        + ++++ G K++ K+
Sbjct: 61  DEYMMGYGKTIDVAI-EEGVVRVRDHGRGVPLGKVKD--------VSSKMNTGAKYDSKA 111

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           +K S GL+GVG+  VNALSS+ +++  R+     + +   I+            + GT +
Sbjct: 112 FKKSVGLNGVGIKAVNALSSFFQIQSFRDRQTTSVEYSKAIVTKEDK-IHDTTEENGTLI 170

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F+P + IF+  +F  D ++  L+   FLN+ + I    K+         F K G+   +
Sbjct: 171 EFIPDNTIFTNYNFRDDYVESLLKNYVFLNTGLTIIYNGKK--------FFSKNGLVDLL 222

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +         +   I ++       I++ +   D Y E    F N      GGTH S  R
Sbjct: 223 NENMT--SEALYPIIHLKDED----IEVVITHTDQYGEEYYSFVNGQHTTQGGTHQSAFR 276

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            +L+R +  Y  K+F            D R G  + +SIK+ +P F SQTK KL S ++ 
Sbjct: 277 ESLSRVVKEYYNKNFDYA---------DIRSGIVAAISIKVEEPVFESQTKTKLGSKDMG 327

Query: 354 S---VVESFVNDGLSAWLEEHPLEA--------KIIVKKVLDASMVRDAARRARDLTRRK 402
                V+ F+ D L   L+ +  +         K I+    +         +      +K
Sbjct: 328 PGGPSVQKFIGDFLKKELDNYLHKHSDVSETLLKKILDSEKE-RKAIAGVTKLARERAKK 386

Query: 403 GVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
             L             D    +  ++ +F+ EGDSA GS  + R+   QA+  LRGK LN
Sbjct: 387 ANLHNKKLRDCRIHYNDTKGDNLDETSIFITEGDSASGSITKSRNPNLQAVFSLRGKPLN 446

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
                   +  ++E   L  AL    G     ++ LRY+KII+ TDAD DG HIR L+LT
Sbjct: 447 SFGLTKKIVYENEEFNLLQAALNIEDG-----LDGLRYNKIIVATDADTDGMHIRLLILT 501

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF +  P LI    +YI++ PL+ +   K   Y   EE     +     + EI  F    
Sbjct: 502 FFLQFFPDLIKKNHVYILQTPLFRVRNKKETFYCYTEEERIAAISKLGANPEITRF-KGL 560

Query: 580 GVISKNDLRNFIDDALKIDKLIKD 603
           G IS ++  +FI   +++D++   
Sbjct: 561 GEISPDEFVHFIGKDMRLDRVTMK 584


>gi|22091034|dbj|BAC06808.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 238/393 (60%), Positives = 303/393 (77%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ D PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|288928630|ref|ZP_06422476.1| DNA topoisomerase IV, B subunit [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329614|gb|EFC68199.1| DNA topoisomerase IV, B subunit [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 668

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 167/685 (24%), Positives = 287/685 (41%), Gaps = 65/685 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
              ++Y  D+I+ L  ++ V+ RP MYIG     +    G++ ++ EV+DN+IDE     
Sbjct: 24  NNQTAYTDDNIRHLSDMEHVRTRPGMYIGRLGDGTQAEDGIYVLLKEVIDNSIDEFKMQA 83

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I V L  D   +V D GRGIP            E + + L+ GGK++ K+++ S GL
Sbjct: 84  GKRIEVDLEDDLRVSVRDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFQKSVGL 135

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG+  VNALS+  + R  REG +  + F  G L +    T     + GT + F P + 
Sbjct: 136 NGVGLKAVNALSARFEARSYREGKVRTVVFERGELISD--NTEDTNEENGTFIFFEPDNT 193

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +F    F  + ++  LR  ++LN+ + I    +R           + G+   ++    + 
Sbjct: 194 LFLNYRFKGEFVETMLRNYTYLNAGLTIMYNGRRI--------ISRNGLADLLNDRMTN- 244

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              +   I IQG      I++A    + Y E    F N      GGTH S  +  + + I
Sbjct: 245 -DGLYPIIHIQGED----IEIAFTHANQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAKTI 299

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS---SEVRSVVE 357
             +  K++            D R G  + ++I + +P F SQTK KL S   S     V 
Sbjct: 300 KDFFSKNYEY---------VDIRNGLVAAIAINVQEPMFESQTKIKLGSLTMSPGGESVN 350

Query: 358 SFVNDGLSAWLEEHPLEA-------KIIVKKVLDASMVRDAARRARDLTRRKGVLDI--- 407
            +V D +   ++ +           K  + +            +      +K  L     
Sbjct: 351 KYVGDFIKREVDNYLHIHADVAEEIKRKIDESERERKAMAGVTKIARERAKKANLHNRKL 410

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                  +D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN        
Sbjct: 411 RDCRIHFSDAKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKKV 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  P 
Sbjct: 471 VYENEEFNLLQAALDIEEG-----LDTLRYNKVIVATDADVDGMHIRLLIITFFLQFFPE 525

Query: 528 LIHNGFLYIIKPPLYGITRGK------SLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           L+  G +Y+++ PL+ +   +       +    D   ++    N  ++       + +  
Sbjct: 526 LVKKGHVYVLQTPLFRVRNRRTKIKSKKVIAAADARLMKGERKNDFITRYCYNEDERQKA 585

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           I++      I     + ++  + + +    +  +EQ  +    N +  + +   +     
Sbjct: 586 IAELGPDPEITRFKGLGEISPEEFTHFIGPEMRLEQVTLHK--NDQVHKLLEYYMGKNTM 643

Query: 640 NRLNFIAEKSEKSWHGSINNSDILV 664
            R NFI +       G        V
Sbjct: 644 ERQNFIIDNLVVETDGPTEEETTEV 668


>gi|148470256|gb|ABQ66075.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 195/423 (46%), Positives = 278/423 (65%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++GN +   +  GI +
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNRFRQIYHKGIPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL         TGT + F P   I     F++D L HR REL +LN ++ I  I +   
Sbjct: 61  SPLA-ITGTSETTGTSIRFYPDLTIMETDAFSFDVLAHRFRELGYLNPALTI--ILREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+ +++ +K+ +       +   +  + +++ ++ D    E +L 
Sbjct: 118 TLREEVFHDEGGIRSFLLFVNENKRTIHDPLTFRKSFDNGSTFEISFQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GGTH+ G R+ALTR +  +++    +K ++    G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGTHVRGFRAALTRVVNRFIKDKNLNKGEEVR--GEDIREGLSAIVSIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+ + L    E+    A+ I  K + ++  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVSGAMETFLAEALEDAFEKQGTVARAIADKAILSAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP KSEL++VEGDS GGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSVGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+++   K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSKGVGKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|32364164|gb|AAP80230.1| GyrB [Bisgaard Taxon 17]
          Length = 382

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 230/385 (59%), Positives = 293/385 (76%), Gaps = 3/385 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+R+G+++E  +  G    PL + G+    +GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTIIGNTE-TSGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F PS DIF++  F+Y  L  RLRELSFLNS V I L+DKR          Y+GGI+AF
Sbjct: 60  VRFWPSPDIFAITTFDYKILAKRLRELSFLNSGVSIRLVDKRDGTE--DHFHYEGGIQAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKNPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR + SY+E     KK+K S  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RGALTRSLNSYMENEGLLKKEKVSTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VES +N+ +  +L E+P +AKIIV +++D S  R+AAR+AR++TRRKG LDIA LPG
Sbjct: 238 KSAVESAMNEKMQEYLLENPADAKIIVNQIMDGSTCREAARKAREMTRRKGALDIAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRY 497
           E+GTLITALG GIG+D ++ +KLRY
Sbjct: 358 EVGTLITALGCGIGRDEYNPDKLRY 382


>gi|22091036|dbj|BAC06809.1| gyrase B [Klebsiella oxytoca]
          Length = 390

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 233/393 (59%), Positives = 300/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+  I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKIHRQIYAHGVPQAPLAVTGDTE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSYETFTNVIEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKTAVEQQMNELLNEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|328862532|gb|EGG11633.1| hypothetical protein MELLADRAFT_46846 [Melampsora larici-populina
           98AG31]
          Length = 1259

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 150/704 (21%), Positives = 258/704 (36%), Gaps = 65/704 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S    + +Y     Q L  L+ V KRP  YIG  +                         
Sbjct: 110 SKKSASQTY-----QKLTQLEHVLKRPDTYIGSVEAIRQYMWVYDKEKKAMANKEISFVP 164

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ ++ E+L NA D        D + VT++ +    +V +NG+GIP ++H+ EG    E
Sbjct: 165 GLYKIVDEILVNAADNKQRDDKMDTLKVTIDPEKNLISVMNNGKGIPIEIHETEGCYIPE 224

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGI- 154
           +I   L AG  F+    K +GG +G G  + N  S+   +          Y+ +F N + 
Sbjct: 225 LIFGHLLAGSNFDDDEKKTTGGRNGYGAKLANIYSTEFIVETAEATTCKKYKQTFRNNMS 284

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFS------VQDFNYDTLQHRLRELSFLNSSVQI 208
           +     +T +   D  T+++F P    F+      +       L  R+ +++    +V++
Sbjct: 285 VKEKPKITENKKGDQYTKISFKPDLVKFNLPAENGLAGDMEALLSKRVYDMAGTLKNVKV 344

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            L D+R                                   I         ++A   +DG
Sbjct: 345 WLNDERLKVTTFKKYVEM-YTNGINEVKIPGSPGAGPPKATILYEECGKRWEVAFTPSDG 403

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
             + +  F N+I    GGTH+  +   L  +IT    K       K  +     R     
Sbjct: 404 QFQQI-SFCNSIATTKGGTHVDHVVKQLVEKITEAANKHK----AKVKLKPFQVRNHLWV 458

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            ++  + +P F SQTKE +        V  F +  + +      +    ++  V+D + +
Sbjct: 459 FVNCLVENPAFDSQTKENMTLG-----VSKFGSKCVMSDEFFKKVMKSGVIDSVVDFAKL 513

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---R 445
           ++     +    ++  +          +   +   +  L L EGDSA   A  G +   R
Sbjct: 514 KEEVALKKTDGSKRSRITGIVKLEDANNAGTKKAAECTLILTEGDSAKSLAVAGLTVIGR 573

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           +N  + PLRGK+LNV  A   ++L++ EI  +   +G   G+       LRY  ++IMTD
Sbjct: 574 DNYGVFPLRGKLLNVREASGTQLLANAEIQHIKKIMGLQQGKKYTSRESLRYGSLMIMTD 633

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
            D DG+HI+ L++ F     PSL+   GFL     P+  +TR K           E +  
Sbjct: 634 QDHDGSHIKGLIINFLDYFFPSLLEIPGFLVEFITPIVKVTRKKQELSFFTMPEFERWKE 693

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
                         +   SK        DA    K       +  K    Q     + + 
Sbjct: 694 EN---------NGGREWKSKYYKGLGTSDAKDAKKYFSKMSSHRIKFAPTQPTDRDLIDM 744

Query: 625 ESDQEIN---VSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             +++                +     S+ S+   IN   IL  
Sbjct: 745 AFNKKKADNRKEWLRGFEPGTHLDHNVSQISYTEFINKELILFS 788


>gi|329962707|ref|ZP_08300630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328529541|gb|EGF56444.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 644

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 180/664 (27%), Positives = 294/664 (44%), Gaps = 68/664 (10%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
            +  +  Y  D+I+ L  ++ ++ R  MYIG     S    G++ ++ EV+DN+IDE   
Sbjct: 21  TSASSVEYTDDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKM 80

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G    I VT+      +V D GRGIP            E + ++L+ GGK++ K++K S 
Sbjct: 81  GAGKRIEVTIEDSLRVSVRDYGRGIPQGK-------LVEAV-SKLNTGGKYDSKAFKKSV 132

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG+  VNALSS  ++R  REG +    F  G L +   VT  +  + GT + F P 
Sbjct: 133 GLNGVGIKAVNALSSRFEVRSYREGKVRTAIFEKGTLLSD--VTEDSAEENGTYIFFEPD 190

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F    ++  LR  ++LN+ +      +R             G+E  +     
Sbjct: 191 ATLFLNYSFQNQFVETLLRNYTYLNTGLTFIYNGQRIVSRH--------GLEDLLKDNMT 242

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   I ++G      I++A    + Y E    F N      GGTH + L+  + R
Sbjct: 243 --SEGLYDIIHLKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTALKEHIAR 296

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS--------- 349
            I  +  K+             D R G  + ++I + +P F SQTK KL S         
Sbjct: 297 TIKEFYNKNQEYA---------DIRNGLVAAIAIDVEEPMFESQTKTKLGSNNMWPAAPQ 347

Query: 350 ------SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD--------AARRA 395
                   V   V  F+   +  +L ++PL A+++++K+ D+   R         A  RA
Sbjct: 348 EHKPAGPTVNKYVGDFIKTEVDNYLHKNPLVAEVMLQKIQDSEKERKAIAGVTKLARERA 407

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +        L             +++ +   +F+ EGDSA GS  + R    QA+  LRG
Sbjct: 408 KKANLHNRKLRDCRYHLSDGKGKDQEAESC-IFITEGDSASGSITKSRDVNTQAVFSLRG 466

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K LN        +  ++E   L  AL    G     I  LRY+K+I+ TDADVDG HIR 
Sbjct: 467 KPLNSYGLTKKVVYENEEFNLLQAALNIEDG-----IETLRYNKVIVATDADVDGMHIRL 521

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           L++TFF +  P LI  G +YI++ PL+ +   K   Y   E+     +     + EI  F
Sbjct: 522 LIITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTNYCYTEDERIKSIEELGPNPEITRF 581

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
               G IS ++ R+FI   ++++++      +  K  +E  +       ++    N+ + 
Sbjct: 582 -KGLGEISPDEFRHFIGKDMRLEQVSLR-KTDLVKELLEFYMGKNTMERQNFIINNLVIE 639

Query: 636 SKLA 639
             LA
Sbjct: 640 EDLA 643


>gi|282880548|ref|ZP_06289255.1| DNA topoisomerase IV subunit B [Prevotella timonensis CRIS 5C-B1]
 gi|281305651|gb|EFA97704.1| DNA topoisomerase IV subunit B [Prevotella timonensis CRIS 5C-B1]
          Length = 670

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 156/575 (27%), Positives = 262/575 (45%), Gaps = 56/575 (9%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADII 64
           +Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EVLDN+IDE      D I
Sbjct: 29  AYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVLDNSIDEFKMKAGDRI 88

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +  +    V D GRGIP            E + + L+ GGK++ K++K S GL+GVG
Sbjct: 89  EIDIEDNLRVRVRDYGRGIPQGK-------LVEAV-SVLNTGGKYDSKAFKKSVGLNGVG 140

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +  VNALS+  ++   REG + +++F  G +      T    +++GT + F P   +F  
Sbjct: 141 IKAVNALSAHFEVESFREGKVRKLTFEKGDMKTD--KTTKTSDESGTYIYFEPDDTLFKN 198

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+ D ++  LR  ++LN+ + I    +R           + G+E  ++         +
Sbjct: 199 YSFHDDIVETMLRNYTYLNAGLTIMYNGRRIKS--------RNGLEDLLNDNMT--TDGL 248

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I + G      I++A    + Y E    F N      GGTH S  +  + + I  + 
Sbjct: 249 YPIIHMIGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAKTIKEFF 304

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV---VESFVN 361
           +K++            D R G    ++I + +P F SQTK KL S+++      +  +V 
Sbjct: 305 DKNYEYT---------DIRNGIVGAIAINVEEPVFESQTKIKLGSTQMAPGGETINKYVG 355

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDAS--------MVRDAARRARDLTRRKGVLDI---ASL 410
           D +   ++ +    K     +L+A                +      +K  L        
Sbjct: 356 DFIKREVDNYLHIHKEDCADILEAKIKSSEHERKAMAGVTKLARERAKKANLHNRKLRDC 415

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
               +D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN        +  
Sbjct: 416 RIHFSDEKNDRKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYE 475

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  P LI 
Sbjct: 476 NEEFNLLQAALDIEDG-----LDTLRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIK 530

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
            G +Y+++ PL+ +   ++    KD  +  D  ++
Sbjct: 531 KGHVYVLQTPLFRVRNKRTKIKNKDVIAEADEKLD 565


>gi|155029069|dbj|BAF75420.1| DNA gyrase B [Sporosarcina saromensis]
 gi|161085592|dbj|BAF93883.1| DNA gyrase B [Sporosarcina sp. HG646]
 gi|161085594|dbj|BAF93884.1| DNA gyrase B [Sporosarcina sp. HG711]
          Length = 391

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 195/393 (49%), Positives = 281/393 (71%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS + ++ ++R+  ++ ++F  G++   L V G   ++TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEYTEVYVRRDEKVHAITFERGVVTKELEVIGET-DETG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F    +IF     + Y+ L HRLREL++LN  ++IS+ D+R  E R  T  Y+GGI
Sbjct: 60  TRIRFKADPEIFLETTVYEYEILAHRLRELAYLNRGLRISITDEREEEKRVDTFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+++K+P+ + PI I+G +D ISI++AM++N G+ EN+  F NNI   +GGTH 
Sbjct: 120 KSYVEHLNKNKEPIHEDPIFIEGEKDGISIEIAMQYNSGFAENLFSFANNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR +  Y  K+   K+   ++ GDD REG T+++S+K PDP+F  QTK KL +
Sbjct: 180 SGFKTALTRVVNDYARKNGIIKESDPNLSGDDVREGLTAIISVKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV ++  +  ++G   +L E+P+ A++++ K L A+  R AA+ AR+LTRRK  L+++S
Sbjct: 240 SEVSTITNALFSEGFQRFLLENPITARLVIDKSLMAARARIAAKNARELTRRKSALEVSS 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL+DCS RDPK SEL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 300 LPGKLSDCSSRDPKISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            + EI  +ITALGTGIG + FD++K RYHKIII
Sbjct: 360 GNAEIRMMITALGTGIGGE-FDLSKARYHKIII 391


>gi|18157440|dbj|BAB83772.1| DNA gyrase subunit B [Rhodobacter blasticus]
          Length = 317

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 173/316 (54%), Positives = 222/316 (70%), Gaps = 11/316 (3%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  SGLHHM+YEV+DN IDE+L G+A  + V ++ D S +V DNGRGIP D+H EEG+
Sbjct: 1   DTDDGSGLHHMVYEVVDNGIDEALAGHATDVAVIIHADDSVSVRDNGRGIPVDIHHEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQ-----KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
           SAAEVIMT+LHAGGKFN       +YKVSGGLHGVGVSVVNALS WL+L + R+   Y  
Sbjct: 61  SAAEVIMTQLHAGGKFNNTDDSGNAYKVSGGLHGVGVSVVNALSEWLELTVWRDETEYRA 120

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI------FSVQDFNYDTLQHRLRELSFL 202
            F +G     +   G A    GT+V FL S+ +      FS  D+++ TL++RLREL+FL
Sbjct: 121 RFEDGECVVHVYPVGPAPGKRGTQVRFLASAKVNRPDGTFSNLDYSFKTLENRLRELAFL 180

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V+I L D+R  EP+ + +FY+GG+  FV +LDR K  +M  PI + G R+ I +++A
Sbjct: 181 NSGVRIVLEDERHAEPQRVELFYEGGVREFVKFLDRSKSSIMSEPIYMVGERNGIGVEVA 240

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M WND YHENVL FTNNIPQ+DGGTHL+G R ALTR IT Y + S  +K++K    GDD 
Sbjct: 241 MWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRTITGYAQSSGIAKREKVDFTGDDA 300

Query: 323 REGFTSVLSIKMPDPR 338
           REG T VLS+K+PDP+
Sbjct: 301 REGLTCVLSVKVPDPK 316


>gi|95105520|gb|ABF54927.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 393

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 228/391 (58%), Positives = 305/391 (78%), Gaps = 3/391 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 5   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQ 63

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AF
Sbjct: 64  IRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAF 122

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 123 VEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 182

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 183 FRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 242

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 243 VKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLP 302

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 303 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 362

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 363 QEVATLITALGCGIGRDEYNPDKLRYHNIII 393


>gi|82940540|emb|CAJ44278.1| gyrase B protein [Vibrio lentus]
          Length = 393

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 303/393 (77%), Gaps = 3/393 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI
Sbjct: 60  GTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG H
Sbjct: 119 QAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSSQE+ TLITALG GIG+D ++ +KLRYH I 
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIH 391


>gi|58530666|dbj|BAD89287.1| DNA gyrase B [Ferrimonas sp. A3B-64-2]
          Length = 390

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 228/393 (58%), Positives = 299/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G+++E  +  G  + PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTIRRQGHVHEQIYHLGEPEAPLKVVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS  IFS   F+YD L  R+RELSFLNS V I L+D+R  +       Y+GGI+
Sbjct: 60  TSIRFWPSPTIFSDVTFHYDILAKRVRELSFLNSGVSIRLVDERDGKE--EHFCYEGGIQ 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNIS-IDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K  + Q+       R++ + +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVDFLNTNKTAINQNIFYFNSEREDGTAVEIAMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R++LTR + +Y++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRASLTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+  VE  + + L+ +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKGAVEQAMGEKLAEYLLENPAEAKMVVNKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D +D  K RYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYDPEKTRYHNIII 390


>gi|83854001|gb|ABC47938.1| gyrase B subunit [Vibrio cholerae O139]
          Length = 386

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 230/388 (59%), Positives = 300/388 (77%), Gaps = 3/388 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV
Sbjct: 60  RFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 119 THLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 179 RGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 239 KSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 299 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           E+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 359 EVATLITALGCGIGRDEYNPDKLRYHNI 386


>gi|66474505|gb|AAY46822.1| GyrB [Aeromonas caviae]
          Length = 385

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 230/388 (59%), Positives = 296/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K+P+P+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPEPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|126035354|gb|ABN72430.1| gyrase B subunit [Vibrio cholerae]
          Length = 386

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 230/388 (59%), Positives = 300/388 (77%), Gaps = 3/388 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV
Sbjct: 60  RFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 119 THLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 179 RGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 239 KSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 299 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           E+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 359 EVATLITALGCGIGRDEYNPDKLRYHNI 386


>gi|22091028|dbj|BAC06805.1| gyrase B [Enterobacter cloacae]
 gi|22091030|dbj|BAC06806.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 237/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|325859713|ref|ZP_08172843.1| DNA topoisomerase IV subunit B [Prevotella denticola CRIS 18C-A]
 gi|325482639|gb|EGC85642.1| DNA topoisomerase IV subunit B [Prevotella denticola CRIS 18C-A]
          Length = 653

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 160/678 (23%), Positives = 284/678 (41%), Gaps = 65/678 (9%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADII 64
            Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE      D I
Sbjct: 16  DYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDEFKMNAGDRI 75

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +  +   +V D GRGIP            E + + L+ GGK++ K++K S GL+GVG
Sbjct: 76  EIDVEDNLRVSVRDYGRGIPQGK-------LVEAV-SVLNTGGKYDSKAFKKSVGLNGVG 127

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           V  VNALSS  +++  R+G + E+SF  G + +    T  + ++ GT + F P + +F  
Sbjct: 128 VKAVNALSSHFEVKSFRDGKVRELSFEKGNIRSD--KTKKSADENGTYIYFEPDNTLFKN 185

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+ D ++  LR  ++LN+ + I    +R             G++  ++         +
Sbjct: 186 YSFHDDIVEEMLRNYTYLNTGLAIMYNGRRILSRH--------GLKDLLTDNMTV--DPL 235

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              + ++G      I++A    + Y E    F N      GGTH +  +  + R I  + 
Sbjct: 236 YPIVHMKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAFKEHIARTIKEFF 291

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS---------- 354
            K              D R G  + +++ + +P F SQTK KL S+++            
Sbjct: 292 GKYEY----------GDIRNGLVAAIAVNVEEPVFESQTKIKLGSTQMAPDGESINKYVG 341

Query: 355 -VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI---ASL 410
             +++ V++ L    E+     +  +K+            +      +K  L        
Sbjct: 342 DFIKTNVDNYLHIHKEDFTDILENKIKETERERKAMAGVTKLARERAKKANLHNRKLRDC 401

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
                D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN        +  
Sbjct: 402 RVHYCDVKNNRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYE 461

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  P LI 
Sbjct: 462 NEEFNLLQAALDIEDG-----LDSLRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIK 516

Query: 531 NGFLYIIKPPLYGITRGK---SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
            G +Y+++ PL+ +   +     + V  +         +            +  ++    
Sbjct: 517 KGHVYVLQTPLFRVRNRRTKIKDKQVIADADAHRAKNEKKNDFITRYCYSEEERLAAISD 576

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA----NRLN 643
                +  +    + +  P+    FI   +         + +++  L   +      R N
Sbjct: 577 LGPEPEITRFKG-LGEISPDEFAHFIGPDMRLEQVTLHKNDQVSKLLEYYMGKNTMERQN 635

Query: 644 FIAEKSEKSWHGSINNSD 661
           FI +           + +
Sbjct: 636 FIIDNLVIEEDLPEEDGE 653


>gi|222354432|gb|ACM47984.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 388

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 236/390 (60%), Positives = 298/390 (76%), Gaps = 3/390 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 2   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 61  IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LG GIG+D ++ +KLRYH IIIMTDADVD 
Sbjct: 359 LGCGIGRDEYNPDKLRYHNIIIMTDADVDA 388


>gi|22090904|dbj|BAC06743.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 300/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+RE  I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRECKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|126035304|gb|ABN72405.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|126035308|gb|ABN72407.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|126035318|gb|ABN72412.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 387

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 235/390 (60%), Positives = 301/390 (77%), Gaps = 4/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|95105518|gb|ABF54926.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 389

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 230/391 (58%), Positives = 304/391 (77%), Gaps = 3/391 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT
Sbjct: 1   TSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           ++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+A
Sbjct: 60  QIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 FVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A L
Sbjct: 239 EVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 299 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 359 SQEVATLITALGCGIGRDEYNPDKLRYHNII 389


>gi|82568131|dbj|BAE48500.1| DNA gyrase B [Thermoflavimicrobium dichotomicum]
          Length = 390

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 205/393 (52%), Positives = 286/393 (72%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            + YK SGGLHGVGVSVVNALS WL++ +KREG I+   +  G+ +  L V G   N+TG
Sbjct: 1   GEGYKFSGGLHGVGVSVVNALSEWLEVEVKREGKIHRQRYRRGVPEMDLEVIGYT-NETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T++TF P  +IF+    ++YD LQ+RLREL+FLN  ++I L D+R  E R+    + GGI
Sbjct: 60  TKITFKPDKEIFTETTVYDYDILQNRLRELAFLNRGIKIVLEDQR-GEGRKDIFQFDGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +L+R+++ L + PI I+G+++ I I++AM++ND Y  N+  + NNI   +GGTH 
Sbjct: 119 CSFVEHLNRNREVLHEPPIYIEGTKEQIQIEIAMQYNDSYSSNIYSYANNIHTHEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  ++   K+   ++ GDD REG T+++S+K+ +P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRNNLLKESDSNLTGDDVREGLTAIVSVKITNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R+  E   +D   ++LEEHP  AK I+ K + A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 239 SEARTATEQLFSDRFQSYLEEHPAVAKKIISKAVTAARAREAARKARELTRRKNALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ R+ + SELF+VEGDSAGG+AKQGR R  QAILPL+GKILNVE+AR DK L
Sbjct: 299 LPGKLADCTSRNAEISELFIVEGDSAGGTAKQGRDRMFQAILPLKGKILNVEKARLDKAL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI T+ITALGTGIG+D F+++KLRYHKIII
Sbjct: 359 SNDEIRTIITALGTGIGED-FNLDKLRYHKIII 390


>gi|282858665|ref|ZP_06267823.1| DNA topoisomerase IV subunit B [Prevotella bivia JCVIHMP010]
 gi|282588583|gb|EFB93730.1| DNA topoisomerase IV subunit B [Prevotella bivia JCVIHMP010]
          Length = 648

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 150/567 (26%), Positives = 258/567 (45%), Gaps = 58/567 (10%)

Query: 1   MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDE 55
           M++  ++   Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE
Sbjct: 1   MAEEAKSKVQYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
                 + I + +  +   +V D GRGIP            E + + L+ GGK++ K++K
Sbjct: 61  FKMEAGNRIEIDIEENLRVSVRDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFK 112

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            S GL+GVGV  VNALS+  +++  REG +  + F  G L +    T  + ++ GT + F
Sbjct: 113 KSVGLNGVGVKAVNALSAKFEVKSFREGKVRHLWFEKGELKDD--KTSKSTDENGTFIYF 170

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P + +F    F+ D ++  LR  ++LN+ + I    +R             G++  ++ 
Sbjct: 171 EPDNTLFKNYQFHDDIVETMLRNYTYLNTGLTIMYNGRRILSRH--------GLKDLLTD 222

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                   +   + ++G      I++A    + Y E    F N      GGTH +  +  
Sbjct: 223 NMTV--DPLYPIVHMKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAFKEH 276

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           + + I  Y  K              D R G  + +++ + +P F SQTK KL S+++   
Sbjct: 277 IAKTIKEYFGKYEY----------GDIRNGLVAAIAVNVEEPIFESQTKVKLGSTQMAPD 326

Query: 356 ---VESFVNDGLSAWLEEHPLEAKIIVKKVLDAS--------MVRDAARRARDLTRRKGV 404
              +  +V D +   ++ +    K     +L+                 +      +K  
Sbjct: 327 GDTINKYVGDFIKLNVDNYLHIHKEDCSDILENKIKETERERKAMAGVTKLARERAKKAN 386

Query: 405 LDI---ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           L            +D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN  
Sbjct: 387 LHNRKLRDCRIHYSDVKNDRKEESAIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSF 446

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
                 +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF
Sbjct: 447 GLTKKVVYENEEFNLLQAALDIEEG-----LDSLRYNKVIVATDADVDGMHIRLLIITFF 501

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGK 548
            +  P LI  G +Y+++ PL+ +   +
Sbjct: 502 LQFFPELIKKGHVYVLQTPLFRVRNRR 528


>gi|126035266|gb|ABN72386.1| gyrase B subunit [Enterobacter cloacae]
          Length = 388

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 236/391 (60%), Positives = 302/391 (77%), Gaps = 4/391 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYTHGVPQAPLAVTGDT-DKTGTMV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 238 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           E+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYHSIIIM 388


>gi|198274083|ref|ZP_03206615.1| hypothetical protein BACPLE_00220 [Bacteroides plebeius DSM 17135]
 gi|198273161|gb|EDY97430.1| hypothetical protein BACPLE_00220 [Bacteroides plebeius DSM 17135]
          Length = 645

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 177/682 (25%), Positives = 287/682 (42%), Gaps = 84/682 (12%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
             + +++Y  ++I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN+IDE   
Sbjct: 7   QTVSSAAYTEENIRHLSDMEHVRTRPGMYIGRLGDGSQVEDGIYVLLKEVVDNSIDEFKM 66

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
           G    I + +  +   +V D GRGIP         S  + + + L+ GGK++ K++K S 
Sbjct: 67  GAGKRIDIQMEDNLRVSVRDYGRGIPLG-------SLVDAV-SMLNTGGKYDTKAFKKSV 118

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG   VNALS        R+G + +  F  G L +    T +   + GT + F P 
Sbjct: 119 GLNGVGAKAVNALSRRFIAWSARDGQMRKAVFERGELVSD--ETCATDEENGTYIFFEPD 176

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             +F    F  + ++  LR  ++LN+ + I     R           + G+E  ++    
Sbjct: 177 DTLFLNYHFRPEFIETMLRNYTYLNTGLSIYYNGHRIVS--------RNGLEDLLNDNMT 228

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              P +   + + G      I++A   +  Y E    F N      GGTH S  +  + R
Sbjct: 229 A--PGLYPIVHLTGED----IEIAFTHSAQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 282

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS--------- 349
            I  +  K+         +   D R G  + ++I + +P F SQTK KL S         
Sbjct: 283 AIKEFYGKN---------LEFQDIRNGLVAAIAINVIEPTFESQTKIKLGSLTMAPEKDS 333

Query: 350 -----SEVRSVVESFVNDGLSAW------------------LEEHPLEAKIIVKKVLDAS 386
                      V  FV D +                     ++E   E K I      A 
Sbjct: 334 EGNPYPFSGISVNKFVGDFVKEQVDNYLHKHPDVAEVLLQKIQESEKERKAIAGVTKIAR 393

Query: 387 -MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
              + A    R L   +  L+      K  D    +   S +F+ EGDSA GS  + R  
Sbjct: 394 ERAKKANLHNRKLRDCRIHLNDQKGGKKEEDDPRLE---SSIFITEGDSASGSITKSRDV 450

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
             QA+  LRGK LN        +  ++E   L  AL    G     ++ LRY+K+I+ TD
Sbjct: 451 NTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALNIEEG-----LDGLRYNKVIVATD 505

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS----LQYVKDEESLED 561
           ADVDG HIR L++TFF +  P LI  G +YI++ PL+ +   K       Y   +E    
Sbjct: 506 ADVDGMHIRLLMITFFLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETIYCYSDEERVA 565

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
            +   S + EI  F    G IS ++ R+FI   ++++++      +  K  +E  +    
Sbjct: 566 AIEKLSPNPEITRF-KGLGEISPDEFRHFIGKDMRLEQVTLR-KTDAVKELLEFYMGKNT 623

Query: 622 FNCESDQEINVSLASKLANRLN 643
              ++    N+ +   L     
Sbjct: 624 MERQNFIIDNLVVEEDLIKNEE 645



 Score = 38.8 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 108/373 (28%), Gaps = 43/373 (11%)

Query: 460 VERARFDKMLSSQEIGTLITALGTGI-----GQDSFDINKLRYHKIIIMTDADVDGA--- 511
           + RA  +    + E   +   L   I             K++   + +  + D +G    
Sbjct: 280 IARAIKEFYGKNLEFQDIRNGLVAAIAINVIEPTFESQTKIKLGSLTMAPEKDSEGNPYP 339

Query: 512 --HIR-TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD-------EESLED 561
              I     +  F ++      +    + +  L  I   +  +           E + + 
Sbjct: 340 FSGISVNKFVGDFVKEQVDNYLHKHPDVAEVLLQKIQESEKERKAIAGVTKIARERAKKA 399

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
            L N+ L +      D KG   + D           +           +    QAV S  
Sbjct: 400 NLHNRKLRDCRIHLNDQKGGKKEEDDPRLESSIFITEGDSASGSITKSRDVNTQAVFSLR 459

Query: 622 FNCESDQEINVSLASKLAN-RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
               +   +   +  +     L   A   E+   G   N  I+            +L  +
Sbjct: 460 GKPLNSFGLTKKVVYENEEFNLLQAALNIEEGLDGLRYNKVIVATDADVDGMHIRLLMIT 519

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNG--DKIKITGPCSLLDTIFSIGRKGISMQR 738
               F     +     I +  L  +     G  + I        +  I  +      + R
Sbjct: 520 FFLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETIYCYSDEERVAAIEKLS-PNPEITR 578

Query: 739 YKGLGEMNASQLWETTLNPDTR-------SLLRVKI--TDASQADDLFSRLMGDEVEPRR 789
           +KGLGE++           + R        L +V +  TDA +  +L    MG     R+
Sbjct: 579 FKGLGEISPD---------EFRHFIGKDMRLEQVTLRKTDAVK--ELLEFYMGKNTMERQ 627

Query: 790 EFIQENSLPSALD 802
            FI +N L    D
Sbjct: 628 NFIIDN-LVVEED 639


>gi|126035268|gb|ABN72387.1| gyrase B subunit [Enterobacter cloacae]
          Length = 389

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 238/392 (60%), Positives = 304/392 (77%), Gaps = 4/392 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           QE+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSIIIM 389


>gi|83308247|emb|CAJ42020.1| gyrase B [Vibrio tapetis]
          Length = 394

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 235/394 (59%), Positives = 305/394 (77%), Gaps = 3/394 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  + L I R+G+ ++ ++ +G  D PL VTG     
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGVTGDTE-K 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F PS + F+   F+Y+ L  RLRELSFLNS V I LID+R  E +     Y+GG
Sbjct: 60  TGTIIRFWPSEETFTNVHFHYEILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFCYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            +AFV YL+ +K P++Q        R++ IS+++AM+WNDGY EN+ CFTNNIPQ+DGGT
Sbjct: 119 TQAFVDYLNTNKTPIIQKVFHFDYEREDGISVEVAMQWNDGYQENIFCFTNNIPQRDGGT 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KL
Sbjct: 179 HLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+
Sbjct: 239 VSSEVKSAVESAMGEKLSEFLIENPSEAKIVCSKIIDAARARDAARKAREMTRRKGALDL 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 AGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 358

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           MLSSQE+ TLITALG GIG+D ++ +KLRYH I 
Sbjct: 359 MLSSQEVATLITALGCGIGRDEYNPDKLRYHNIH 392


>gi|145309474|dbj|BAF56639.1| DNA gyrase subunit B [Alicyclobacillus tolerans]
          Length = 390

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 196/393 (49%), Positives = 276/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+WL++ + R+G IYE  +  G     L V GS  + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTWLRVEVHRDGKIYEQEYERGTPLYDLRVIGSTDH-TG 59

Query: 171 TEVTFLPSSDIFSVQDFNY-DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V+F P  +IF+       + LQ+RLREL+FLN+ ++I   D+R    +++   Y GG+
Sbjct: 60  TSVSFRPDPEIFTETIVFDSEILQNRLRELAFLNAGLEIIFQDERDG-GKKLNFHYSGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L + P+ + G +D++++++A+++NDGY   +  F NNI   +GGTH 
Sbjct: 119 AEFVEFLNKSKDVLHEDPVFVSGKKDDVTVEIALQYNDGYSATLFSFANNINTHEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  +  K    K+   ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 179 SGFKSALTRVINDFARKLNAIKESDNNLTGDDVREGLTAIISVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES   + L  +L+EHP  AK IV+K + A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 239 SEVRGIVESLFGEKLQTFLDEHPSVAKKIVEKAVMAARAREAARKARELTRRKNALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D    EL++VEGDSAGGSAK GR R  QAILP+RGKI+NVE++R DK+L
Sbjct: 299 LPGKLADCSSKDASICELYIVEGDSAGGSAKSGRDRTFQAILPIRGKIINVEKSRLDKVL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++E+ ++ITA GTGIG+D FDI K RYHKI+I
Sbjct: 359 SNEEVRSIITASGTGIGED-FDITKARYHKIVI 390


>gi|119369998|gb|ABL68013.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 195/423 (46%), Positives = 278/423 (65%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHA GKF+  +YKVSGGLHGVGVSVVNALS  L L I ++GN +   +  GI +
Sbjct: 1   EVIMTVLHAVGKFDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQVYHKGIPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL         TGT + F P   I     F++D L HR REL +LN ++ I  I +   
Sbjct: 61  APLA-ITGTSETTGTSIRFYPDLTIMETDAFSFDVLAHRFRELGYLNPALTI--ILREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+ +++ +K+ +       +   +  + +++ ++ D    E +L 
Sbjct: 118 TLREEVFHDEGGIRSFLLFVNENKRTIHDPLSFRKSFDNGSTFEISFQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GGTH+ G R+ALTR +  +++    +K ++    G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGTHVRGFRAALTRVVNRFIKDKNLNKGEEVR--GEDIREGLSAIVSIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+ + L    E+    A+ I  K + ++  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVSGAMETFLAEALEDAFEKQGAVARAIADKAILSAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           KILNVE+++  +K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIR
Sbjct: 356 KILNVEKSKGVEKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|307939350|gb|ADN95866.1| DNA gyrase B [Hymenobacter ocellatus]
          Length = 437

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 198/425 (46%), Positives = 282/425 (66%), Gaps = 18/425 (4%)

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGG F++ SYKVSGGLHGVG+S VNALS+ L++ + ++G +Y+  +  G    P+   
Sbjct: 6   LHAGGXFDKDSYKVSGGLHGVGMSCVNALSNLLRVTVFKDGKVYQQEYERGAPLYPVKQI 65

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-- 220
           G      GT+V F P   IF+   + Y+T+  RLRELS+LN  ++I+L+DKR  +     
Sbjct: 66  GETE-SRGTQVEFWPDDTIFTDTVYRYETIAARLRELSYLNKGIRINLLDKREIDENGVA 124

Query: 221 --ITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                + +GG+  FV Y     ++ LM  PI +   + N+ +++A+++ND Y E+V  + 
Sbjct: 125 RGEQFYSEGGLAEFVQYLDGAERRALMPKPIHVVSEKGNVPVEVALQYNDSYQEHVFSYV 184

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNI   +GGTH++G R+ALTR + +Y +KS    K+K  + GDD REG T+V+S+K+ +P
Sbjct: 185 NNINTHEGGTHVAGFRAALTRTLKAYADKSGKLAKEKIEISGDDFREGITAVISVKVAEP 244

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL +SEV   V + V + L+ +LEE+P EA +IV KV+ A+  R AA++AR+
Sbjct: 245 QFEGQTKTKLGNSEVSGAVNTVVGEILAQYLEENPKEAILIVDKVILAAKARIAAKKARE 304

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           + +RK V+   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLRGKI
Sbjct: 305 MVQRKTVMGSFSLPGKLADCSETDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLRGKI 364

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSF------------DINKLRYHKIIIMTD 505
           LNVE+A+   +  +QEI  +ITALG   G  +             +++KLRYHK+IIMTD
Sbjct: 365 LNVEKAQEHHIYENQEIRNMITALGVSFGVPADPERGIEKDDKALNLSKLRYHKVIIMTD 424

Query: 506 ADVDG 510
           ADVDG
Sbjct: 425 ADVDG 429


>gi|83017273|dbj|BAE53555.1| DNA gyrase B [Microbulbifer sp. MBIC08258]
          Length = 389

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 226/392 (57%), Positives = 295/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E  + +G+   PL + G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELKLTIRRGGKIHEQVYHHGVPQAPLEIVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TAVHFKPSPDTFSNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EIYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQSQREDGIAVEVALQWNDSFQENIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+EK    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNNYIEKEGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|23978223|dbj|BAC21109.1| DNA gyrase B subunit [Anabaena cylindrica]
          Length = 396

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 181/395 (45%), Positives = 260/395 (65%), Gaps = 7/395 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN++DE+L G+   + V +N DGS TV+D+GRGIP D+H + G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSVDEALAGHCTHVEVDINADGSVTVTDDGRGIPVDIHPKTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVG+SVVNALS ++++ + R+   +   +      
Sbjct: 62  ETVLTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEFVEVTVWRDNKEHLQRYERSFPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L V       TGT +TF P + IF+   +F+Y TL  RLREL++LN+ V+I   D R 
Sbjct: 122 TELQVKPYKEARTGTSITFKPDTQIFTTSIEFDYITLSGRLRELAYLNAGVKIIFTDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S  P+     YKGGI+ +++Y++R K+PL +  I +QG R+N+ ++++++W  D Y
Sbjct: 182 ELLKSDTPKIEVYEYKGGIKEYIAYMNREKQPLHEEIIYVQGERNNVQVEVSLQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K+ + ++ G+  REG T+V
Sbjct: 242 TDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNAIARKRNKIKEHESNLSGEHVREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+SFV + L+ +LE HP  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSFVGEVLTEYLEFHPAIADSILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +AAR AR+L RRK VL+ + LPGKLADCS RDP +
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDPSE 396


>gi|254169591|gb|ACT64886.1| DNA gyrase B subunit [Shewanella algae]
          Length = 390

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 228/393 (58%), Positives = 301/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G    P+   G A   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEAT-KTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS + F+  +F+Y+ L  R+RELSFLNS V I LID+R  +       Y+GGI+
Sbjct: 60  TEIRFWPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLIDERDNKD--EFFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+R+K P+ ++       RD+ I++++AM+WNDG+ E++ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNRNKTPVNKAVFHFSQERDDGITVEVAMQWNDGFQESIFCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  
Sbjct: 238 SEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKGALDLGG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D +D  K RYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYDPEKTRYHYIII 390


>gi|126035340|gb|ABN72423.1| gyrase B subunit [Shigella sonnei]
          Length = 388

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 236/391 (60%), Positives = 301/391 (76%), Gaps = 4/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSIII 388


>gi|37725266|gb|AAR02323.1| gyrase B subunit [Aerococcus urinae]
 gi|37725268|gb|AAR02324.1| gyrase B subunit [Aerococcus urinae]
 gi|37725270|gb|AAR02325.1| gyrase B subunit [Aerococcus urinae]
          Length = 393

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 188/395 (47%), Positives = 272/395 (68%), Gaps = 3/395 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + R+G IY+  +  G + + L V G + + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTKLRVEVYRDGKIYQQEYSRGHIVSDLKVVGQS-DKTG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F+   +IF    D+++ TL  R+REL+FLN  + I+L D+R  + +E+   Y+GGI
Sbjct: 60  TVVNFVADPEIFTDTTDYDFQTLNKRVRELAFLNKGLHITLEDRREEDSQEVAYQYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + +V YL+ +K+ L + P+ ++G  D+I +++A ++  GYH N + F NNI   +GGTH 
Sbjct: 120 KEYVQYLNENKEILFEEPVYLEGQMDDIEVEVAFQYTAGYHSNFMSFANNIHTFEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG+++ALTR I  Y       K+   ++ G+D REG T ++SI+ P+P+F  QTK KL +
Sbjct: 180 SGIKTALTRTINDYARSQNLLKEKDDNLSGEDVREGLTLIVSIRHPNPQFEGQTKMKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR++ +      L  +L E P  A+ IV K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVRTITDRLFGQHLEQFLYETPNIARQIVDKGILASKARQAAKRAREMTRKKSGLEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS R P++ ELF+VEG+SAGGSAK GR R  QAILP+RGKILNVE+A  D++L
Sbjct: 300 LPGKLADCSSRVPEECELFIVEGNSAGGSAKLGRDRHFQAILPIRGKILNVEKASMDRIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           +++EI +L TA+GTG G D FD+ K RYHK++IMT
Sbjct: 360 ANEEIRSLFTAMGTGWGND-FDVTKARYHKLVIMT 393


>gi|161085588|dbj|BAF93881.1| DNA gyrase B [Sporosarcina sp. YM9-149]
          Length = 391

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 195/393 (49%), Positives = 281/393 (71%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS + ++ ++R+  ++ ++F  G++   L V G   ++TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEYTEVYVRRDEKVHAITFERGVVTKELEVIGET-DETG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F    +IF     + Y+ L HRLREL++LN  ++IS+ D+R  E R  T  Y+GGI
Sbjct: 60  TRIRFKADPEIFLETTVYEYEILAHRLRELAYLNRGLRISITDEREEEKRVDTFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+++K+P+ + PI I+G +D ISI++AM++N G+ EN+  F NNI   +GGTH 
Sbjct: 120 KSYVEHLNKNKEPIHEDPIFIEGEKDGISIEIAMQYNSGFAENLFSFANNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR +  Y  K+   K+   ++ GDD REG T+++S+K PDP+F  QTK KL +
Sbjct: 180 SGFKTALTRVVNDYARKNGIIKESDPNLSGDDVREGLTAIISVKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV ++  +  ++G   +L E+P+ A+++V K L A+  R AA+ AR+LTRRK  L+++S
Sbjct: 240 SEVSTITNALFSEGFQRFLLENPITARLVVDKSLMAARARIAAKNARELTRRKSALEVSS 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL+DCS RDPK SEL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 300 LPGKLSDCSSRDPKISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            + EI  +ITALGTGIG + FD++K RYHKI+I
Sbjct: 360 GNAEIRMMITALGTGIGGE-FDLSKARYHKIVI 391


>gi|327312914|ref|YP_004328351.1| DNA topoisomerase IV subunit B [Prevotella denticola F0289]
 gi|326944601|gb|AEA20486.1| DNA topoisomerase IV subunit B [Prevotella denticola F0289]
          Length = 653

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 161/678 (23%), Positives = 285/678 (42%), Gaps = 65/678 (9%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADII 64
            Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE      D I
Sbjct: 16  DYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDEFKMNAGDRI 75

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +  +   +V D GRGIP            E + + L+ GGK++ K++K S GL+GVG
Sbjct: 76  EIDVEDNLRVSVRDYGRGIPQGK-------LVEAV-SVLNTGGKYDSKAFKKSVGLNGVG 127

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           V  VNALSS  +++  R+G + E+SF  G + +    T  + ++ GT + F P + +F  
Sbjct: 128 VKAVNALSSHFEVKSFRDGKVRELSFEKGNIRSD--KTKKSADENGTYIYFEPDNTLFKN 185

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+ D ++  LR  ++LN+ + I    +R             G++  ++         +
Sbjct: 186 YSFHDDIVEEMLRNYTYLNTGLTIMYNGRRILSRH--------GLKDLLTDNMTV--DPL 235

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              + ++G      I++A    + Y E    F N      GGTH +  +  + R I  + 
Sbjct: 236 YPIVHMKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAFKEHIARTIKEFF 291

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS---------- 354
            K              D R G  + +++ + +P F SQTK KL S+++            
Sbjct: 292 GKYEY----------GDIRNGLVAAIAVNVEEPVFESQTKIKLGSTQMAPDGESINKYVG 341

Query: 355 -VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI---ASL 410
             +++ V++ L    E+     +  +K+            +      +K  L        
Sbjct: 342 DFIKTNVDNYLHIHKEDFTDILENKIKETERERKAMAGVTKLARERAKKANLHNRKLRDC 401

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
                D      ++S +F+ EGDSA GS  + R+   QA+  LRGK LN        +  
Sbjct: 402 RVHYCDVKNNRKEESSIFITEGDSASGSITKSRNVNTQAVFSLRGKPLNSFGLTKKVVYE 461

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  P LI 
Sbjct: 462 NEEFNLLQAALDIEDG-----LDSLRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIK 516

Query: 531 NGFLYIIKPPLYGITRGK---SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
            G +Y+++ PL+ +   +     + V  +         +            +  ++    
Sbjct: 517 KGHVYVLQTPLFRVRNRRTKIKDKQVIADADAHRAKNEKKNDFITRYCYSEEERLAAISD 576

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA----NRLN 643
                +  +    + +  P+    FI   +         + +++  L   +      R N
Sbjct: 577 LGPEPEITRFKG-LGEISPDEFAHFIGPDMRLEQVTLHKNDQVSKLLEYYMGKNTMERQN 635

Query: 644 FIAEKSEKSWHGSINNSD 661
           FI +           N +
Sbjct: 636 FIIDNLVIEEDLPEENGE 653


>gi|23978284|dbj|BAC21125.1| DNA gyrase B subunit [Chroococcidiopsis sp. PCC 7431]
          Length = 396

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 186/393 (47%), Positives = 257/393 (65%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I + LN DGS  V D+GRGIPTD H + G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHIEIDLNADGSVQVVDDGRGIPTDTHPQTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVG+SVVNALS W+++ + R+  ++   +  G+  
Sbjct: 62  ETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVTVWRDKKVHTQRYERGVPM 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             L         TGT V F P ++IF+V  +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 GELQTKSFKEAKTGTGVRFKPDAEIFTVGTEFDYITLAGRLRELAYLNAGVRITFTDHRL 181

Query: 216 P-----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
                 EP+  T  YKGGI  +VSY++  K+ L +  I +QG R+N+ +++A++W  D Y
Sbjct: 182 ELLKSQEPKVETYEYKGGIREYVSYINNDKQALHEEIIFVQGERNNVQVEVALQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +N+L F NNI   DGGTHL GL++ LTR + +   K    K ++ ++ G+  REG T+V
Sbjct: 242 TDNLLGFANNIRTVDGGTHLEGLKTVLTRTLNAIARKRNKIKDNEPNLSGEHVREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE  P  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPSIADSILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|119369940|gb|ABL67984.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 224/427 (52%), Positives = 284/427 (66%), Gaps = 15/427 (3%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R G I+E  + NG+ D
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDELHLTIERHGKIHEQHYRNGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P V        TGT+V F PSS  F+  +F+YD L  RLRELSFLNS V+I L D+RS 
Sbjct: 61  EP-VKVTGDTTTTGTKVWFKPSSATFTNIEFHYDILAKRLRELSFLNSGVKIHLHDERSD 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +       Y+GGI+AFV +L+R+K P++        ++DN++++LA++WND + ENV CF
Sbjct: 120 KR--DEFCYEGGIKAFVEHLNRNKTPIIPCVFSFTAAKDNVAVELALQWNDSFQENVYCF 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQKDGGTHL+G R+ LTR + +Y+EK   ++K K        R G T         
Sbjct: 178 TNNIPQKDGGTHLAGFRAGLTRTLNTYIEKEGLAQKGKSFHN----RRGCTRRTDCDFIG 233

Query: 337 PRFSSQTKEKLVSSEVRSVVESF------VNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
                +++  + +      + S           +        +  K    K +     RD
Sbjct: 234 KS--GRSQILVTNKRQVGFIRSEIFCLISCRCKIQGLFTWKSVRFKSHCWKNVWKRRARD 291

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AARRAR++ RRKG +DIA LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR R  QAI
Sbjct: 292 AARRAREMVRRKGAMDIAGLPGKLADCQEKDPAMSEIYIVEGDSAGGSAKQGRDRNFQAI 351

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG + +D +K+RYH+IIIMTDADVDG
Sbjct: 352 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGHEDYDPDKVRYHRIIIMTDADVDG 411

Query: 511 AHIRTLL 517
           +HIRTLL
Sbjct: 412 SHIRTLL 418


>gi|110612695|gb|ABG78310.1| GyrB [uncultured bacterium]
          Length = 404

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 207/406 (50%), Positives = 278/406 (68%), Gaps = 6/406 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF++ +YKVSGGLHGVGVS VNALS  + + + R+  IYE+ F  G   + L V     
Sbjct: 1   GKFDKNTYKVSGGLHGVGVSCVNALSKKMHVEVARDEKIYEIEFSRGKALHALRVVSETK 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
              GT++ F     IFSV  F+YD +  RLREL+FLN  V+I L D+R  E  E++  Y+
Sbjct: 61  -KRGTKMRFWADDAIFSVTTFDYDLILKRLRELAFLNRGVKIVLKDERDAEHPEVSFRYE 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCFTNNIPQ 282
           GGI +FVSYL+ +K  L  +P+ I+GS++     +  + +++WND Y + +  + NNI  
Sbjct: 120 GGIVSFVSYLNENKNTLFATPVYIRGSKEISDGIVEFEASLQWNDSYTDTLFSYVNNIAT 179

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           + GGTH+SG  +ALTR    Y++     K +K +V GDD REG  +VLS+K+P+P+F  Q
Sbjct: 180 RQGGTHVSGFSTALTRVFNLYLKAHPLPKSEKFTVTGDDMREGMVAVLSLKVPNPQFEGQ 239

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KL + EV S V+  V D LS +LEE+P  AK+I++K L A+  R+AARRAR+LT RK
Sbjct: 240 TKQKLGNMEVGSCVQQIVGDELSTFLEENPAVAKVILEKALVAAQAREAARRARELT-RK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             LD A LPGKL DC ERDP   ELF+VEGDSAGGSAK GR R  QAILP+RGKILNVE+
Sbjct: 299 TALDSARLPGKLTDCQERDPALCELFIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEK 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           AR +++L +QE+ T++ A+G GIG   F + KLRYHK+IIMTDADV
Sbjct: 359 ARLERILQNQEVATMVAAMGCGIGAGHFTLEKLRYHKVIIMTDADV 404


>gi|33590328|gb|AAQ22704.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. luminescens]
          Length = 389

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 227/387 (58%), Positives = 297/387 (76%), Gaps = 4/387 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-Q 59

Query: 169 TGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+    E    Y+G
Sbjct: 60  TGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRT--NIEDHFHYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 118 GIKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KL
Sbjct: 178 HLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+
Sbjct: 238 VSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDL 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 298 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINK 494
           MLSSQE+ TLITALG GIG+D ++ +K
Sbjct: 358 MLSSQEVATLITALGCGIGRDEYNPDK 384


>gi|4514415|dbj|BAA75406.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 389

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 232/392 (59%), Positives = 291/392 (74%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L I R G+I++  + +G    PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVIGDIE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    ++GG+ 
Sbjct: 60  TTVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVA--LEHIFDFEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINQGKTHLNEIFHFTTQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+GTLITALG GIG++ ++ +KLRYHKIII
Sbjct: 358 SQEVGTLITALGCGIGREEYNPDKLRYHKIII 389


>gi|126035322|gb|ABN72414.1| gyrase B subunit [Shigella boydii]
          Length = 389

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 236/391 (60%), Positives = 301/391 (76%), Gaps = 4/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTM 60

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 61  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 239 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|66474535|gb|AAY46837.1| GyrB [Aeromonas sp. AN-46]
          Length = 385

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 232/388 (59%), Positives = 295/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+  ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRHEYNPDK 385


>gi|254169589|gb|ACT64885.1| DNA gyrase B subunit [Shewanella sp. 20-23R]
          Length = 390

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 226/393 (57%), Positives = 299/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G    P+   G A   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEAT-KTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS + F+  +F+Y+ L  R+RELSFLNS V I LID+R  +       Y+GGI+
Sbjct: 60  TEIRFWPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLIDERDNKD--EFFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+R+K P+ +        R++ I++++AM+WNDG+ E++ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGFQESIFCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y+E    +KK K +  GDD  EG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRNLNNYMENEGFNKKGKTNATGDDACEGLTAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  
Sbjct: 238 SEVKGAVEQTMAEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKGALDLGG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D +D  K RYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYDPEKTRYHYIII 390


>gi|222354430|gb|ACM47983.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 387

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 236/389 (60%), Positives = 298/389 (76%), Gaps = 3/389 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 2   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 61  IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           LG GIG+D ++ +KLRYH IIIMTDADVD
Sbjct: 359 LGCGIGRDEYNPDKLRYHNIIIMTDADVD 387


>gi|66474495|gb|AAY46817.1| GyrB [Aeromonas caviae]
 gi|66474523|gb|AAY46831.1| GyrB [Aeromonas hydrophila]
          Length = 385

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 231/388 (59%), Positives = 296/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|126035202|gb|ABN72354.1| gyrase B subunit [Escherichia coli]
          Length = 388

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 236/391 (60%), Positives = 302/391 (77%), Gaps = 4/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG +   TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGESE-KTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSIII 388


>gi|66474507|gb|AAY46823.1| GyrB [Aeromonas veronii bv. sobria]
          Length = 385

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 232/388 (59%), Positives = 295/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+
Sbjct: 61  -GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDQYNPDK 385


>gi|38492386|gb|AAR22499.1| DNA gyrase subunit B [Citrobacter sp. AHL6]
          Length = 389

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 234/391 (59%), Positives = 299/391 (76%), Gaps = 4/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+R+  I+   + +G+   PL VTG   + TGT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSQKLELVIQRDNKIHRQIYEHGVPQAPLAVTGDT-DKTGTM 60

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELS LNS V I L DKR  +       Y+GGI A
Sbjct: 61  VRFWPSHETFTNVTEFEYEILAKRLRELSSLNSGVSIRLKDKRDGKE--DHFHYEGGIRA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 239 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|313159318|gb|EFR58682.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 624

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 165/619 (26%), Positives = 279/619 (45%), Gaps = 59/619 (9%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAI 53
           M+D      N +Y  D+I  L   + ++ RP MYIG          G++ +I EV+DN++
Sbjct: 1   MADLLNTNPNDNYGDDAIVTLSPREHIRLRPGMYIGKLGDGAQADDGIYVLIKEVVDNSV 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE + G    I +++  D   +V D GRGIP         S A  + + ++ GGK+   +
Sbjct: 61  DEFIMGVGRQIDISI-ADNVVSVRDYGRGIPL-------KSLAAAV-SEMNTGGKYGGSA 111

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           +K + GL+GVGV  VN LSS    R  R+G    ++F  G+  +    +G      GT +
Sbjct: 112 FKKTVGLNGVGVKAVNMLSSEFTARSVRDGEARTVTFAQGLEQSDTWESG-VREKNGTFI 170

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           +F    ++F    +N + ++  +R  ++LN  +  +            +   K G+   +
Sbjct: 171 SFRVDEEVFGQYAYNLEYVEQMIRNYTYLNLGLTFNFNG--------SSYVSKNGLLDLL 222

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +     +       +          I++A+    GY E+   F N      GGTH +  R
Sbjct: 223 NENMTEEPLYPPIHLSGDD------IEVAIAHGTGYGESYFSFVNGQYTSQGGTHQAAFR 276

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE-- 351
            A+ + +  +  K              D R    + +S+K+ DP F SQTK KL S E  
Sbjct: 277 EAIAKTVKEFYHK---------DYDPSDIRTSIIAAISVKVTDPVFESQTKIKLGSKEIE 327

Query: 352 ----VRSVVESFVNDGLSAWLEEHPLE----AKIIVKKVLDASMVRDAARRARDLTRRKG 403
               +R+ V  F+   L  +L +H        K IV+   +        ++    T +K 
Sbjct: 328 PGVSMRNFVVDFLGKHLDDYLHKHSETAQILQKKIVENEKE-RKAISGIQKKARETAKKV 386

Query: 404 VLDIASLPGKLADCSERD--PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
            L+   L       +++    ++S +F+ EG+SA GS  + R    QA+  LRGK LN  
Sbjct: 387 SLNNKKLRDCKIHRTDKHELAEQSMIFITEGNSASGSITKSRDVRTQAVFSLRGKPLNCY 446

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
                 +  ++E   L  AL         D++ LRY+K+II TDADVDG HIR L++TFF
Sbjct: 447 GLTKKVVYENEEFNLLQAALNI-----EEDMDNLRYNKVIIATDADVDGMHIRLLMMTFF 501

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
            +  P +I  G L++++ PL+ +   K   Y   E+      +++  +          G 
Sbjct: 502 LQFFPDVIRQGHLFVLQTPLFRVRNKKETHYCYSEDERLK-AVSRCGANAEITRFKGLGE 560

Query: 582 ISKNDLRNFIDDALKIDKL 600
           IS ++ R FI + +++DK+
Sbjct: 561 ISPDEFREFIGEGMRLDKV 579



 Score = 37.7 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 91/313 (29%), Gaps = 44/313 (14%)

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD------EESLEDYL 563
           G  +R  ++ F  + +   +H       +     I   +  +           E+ +   
Sbjct: 329 GVSMRNFVVDFLGKHLDDYLHK-HSETAQILQKKIVENEKERKAISGIQKKARETAKKVS 387

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
           +N     + ++    K  +++  +    +       + K         F  +      + 
Sbjct: 388 LNNKKLRDCKIHRTDKHELAEQSMIFITEGNSASGSITKSRDVRTQAVFSLRGKPLNCYG 447

Query: 624 CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683
                       + L   LN   +     ++  I  +D  V  +        +L  +   
Sbjct: 448 LTKKVVYENEEFNLLQAALNIEEDMDNLRYNKVIIATDADVDGM-----HIRLLMMTFFL 502

Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKG 741
            F     R     +      +  +    +          L  +    R G +  + R+KG
Sbjct: 503 QFFPDVIRQ--GHLFVLQTPLFRVRNKKETHYCYSEDERLKAV---SRCGANAEITRFKG 557

Query: 742 LGEMNASQLWETTLNPDTR-------SLLRVKI-TDASQADDLFSRL---MGDEVEPRRE 790
           LGE++           + R        L +V+I  D    D +   L   MG     R+ 
Sbjct: 558 LGEISPD---------EFREFIGEGMRLDKVRITKD----DPIHDLLEFYMGKNTYERQG 604

Query: 791 FIQENSLPSALDI 803
           FI +N L    DI
Sbjct: 605 FIIDN-LRIEEDI 616


>gi|126035294|gb|ABN72400.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 387

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 236/390 (60%), Positives = 301/390 (77%), Gaps = 4/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I I++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|83017261|dbj|BAE53550.1| DNA gyrase B [Microbulbifer sp. MBIC04035]
          Length = 389

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 227/392 (57%), Positives = 296/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E ++ +G+   PL V G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLTIRRGGKIHEQTYHHGVPQAPLEVVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSEDTFSNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EVYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQSQREDGIAVEVALQWNDSFQENIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|48425515|pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
           Subunit Complexed With Adpnp
 gi|48425516|pdb|1S16|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
           Subunit Complexed With Adpnp
          Length = 390

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 219/398 (55%), Gaps = 11/398 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +      + G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A +   +G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E      +    +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
             WL ++   A+++ +  + ++      R A+ + R+K
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQ--RRMRAAKKVVRKK 390


>gi|226429004|gb|ACO55122.1| DNA gyrase [Allochromatium vinosum]
          Length = 280

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 151/282 (53%), Positives = 198/282 (70%), Gaps = 3/282 (1%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           M++EV+DN+IDE+L GY + ++VTL+ DGS +V D+GRGIP D+H EE  SAAEVI+T L
Sbjct: 1   MVFEVVDNSIDEALAGYCNTVSVTLHTDGSVSVLDDGRGIPVDIHAEENRSAAEVILTVL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L LRI R G I+E  +  G+   PL V G
Sbjct: 61  HAGGKFDDNSYKVSGGLHGVGVSVVNALSDRLLLRIYRNGQIHEQEYSLGVPQYPLKVIG 120

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                TGTE+ F PS +IF+  +F+YD L  RLRELSFLNS V+I+L D+ S   R    
Sbjct: 121 ETT-ATGTEIRFHPSPEIFTNLEFHYDILAKRLRELSFLNSGVRIALTDEASG--RHDVF 177

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI AFV  L+++K+ +  + +     R +I ++LA++WN+ Y E + C+TN IPQ+
Sbjct: 178 EYEGGIRAFVENLNQNKEAIHPTVVYFSTERQDIGVELAIQWNNSYQETIFCYTNTIPQR 237

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           DGGTHL+GLR+ALTR +  Y+E+    K  K   IGDD REG
Sbjct: 238 DGGTHLAGLRAALTRTLNGYIEREGLDKNQKVRPIGDDAREG 279


>gi|66474511|gb|AAY46825.1| GyrB [Aeromonas sp. AE-51]
 gi|66474513|gb|AAY46826.1| GyrB [Aeromonas hydrophila]
 gi|66474517|gb|AAY46828.1| GyrB [Aeromonas hydrophila]
 gi|66474521|gb|AAY46830.1| GyrB [Aeromonas hydrophila]
 gi|66474525|gb|AAY46832.1| GyrB [Aeromonas sp. AN-24]
 gi|66474527|gb|AAY46833.1| GyrB [Aeromonas hydrophila]
 gi|66474531|gb|AAY46835.1| GyrB [Aeromonas hydrophila]
          Length = 385

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 233/388 (60%), Positives = 296/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|18147151|dbj|BAB83056.1| DNA gyrase subunit B [Alcanivorax sp. Nag1]
          Length = 389

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 238/392 (60%), Positives = 301/392 (76%), Gaps = 4/392 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G   
Sbjct: 1   GKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TT 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + +GT V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+
Sbjct: 60  DSSGTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           GG+ AFVSYL+ +K PL Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DG
Sbjct: 118 GGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR + SY++K    KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+
Sbjct: 178 GTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG L
Sbjct: 238 KLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGAL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIA LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARF
Sbjct: 298 DIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARF 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           DKMLSSQE+GTLITALG GIG+D ++I KLRY
Sbjct: 358 DKMLSSQEVGTLITALGCGIGRDEYNIEKLRY 389


>gi|66474515|gb|AAY46827.1| GyrB [Aeromonas hydrophila]
          Length = 385

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 233/388 (60%), Positives = 295/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D +  +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYKPDK 385


>gi|66474539|gb|AAY46839.1| GyrB [Aeromonas jandaei]
          Length = 385

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 233/388 (60%), Positives = 296/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + SY+EK   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNSYMEKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|31071477|dbj|BAC76787.1| DNA gyrase B subunit [Fischerella major NIES-592]
          Length = 396

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 184/393 (46%), Positives = 261/393 (66%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   + V LN DGS TV+D+GRGIPT +  + G S  
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTGIVAKTGKSGL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVG+SVVNALS W+++ + R+  ++   +  GI  
Sbjct: 62  ETVLTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVTVWRDKKVHTQRYERGIPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L+V     + TGT V+FLP S IF+   +F++ TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELIVKPYKDHRTGTSVSFLPDSQIFTTGTEFDFTTLASRLRELAYLNAGVKITFTDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S +P+  T  +KGGI  +++Y++  K+PL +  I +QG R+N+ +++A++W  D Y
Sbjct: 182 QLLKSDQPKVETYEHKGGIREYITYINADKQPLHEEVIYVQGERNNVQVEVALQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +N+L F NNI   DGGTHL GL++ LTR + +   K    K  + ++ G+  REG T V
Sbjct: 242 TDNILGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKLKDSEPNLSGEHVREGLTGV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE HP  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGETLTEYLEFHPSVADAILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|27374981|dbj|BAC53770.1| DNA gyrase B subunit [Marinospirillum insulare]
          Length = 390

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 231/393 (58%), Positives = 294/393 (74%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I R+  ++E  + +G+   PL V G     +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELTLTIWRDKQVHEQVYSHGVPQTPLTVIGETE-KSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ F+  +F++DTL  RLRELSFLNS V+ISL+D+R+   RE    Y+GG+ 
Sbjct: 60  TLVRFRPSNETFTNIEFSFDTLAKRLRELSFLNSGVKISLVDERN--NREEIFHYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K  L        Q   D +++++AM+WNDGY EN+ C+TNNIPQ+DGG HL
Sbjct: 118 AFVDHLNTNKTTLGSVFYFSNQREEDGVNVEVAMQWNDGYSENIYCYTNNIPQRDGGAHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR +  Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRGALTRVLNQYIEQEGLAKKAKVSTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR+ VE  +    S +L E+P EAK IV K+LDA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVRTAVEQEMGKTFSDFLLEYPQEAKAIVSKMLDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SS E+GTLITALG GIG++ F+ +KLRYH III
Sbjct: 358 SSAEVGTLITALGCGIGREEFNPDKLRYHSIII 390


>gi|161085590|dbj|BAF93882.1| DNA gyrase B [Sporosarcina sp. HG644]
          Length = 391

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 195/393 (49%), Positives = 280/393 (71%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS   ++ ++R+  ++ +SF  G++   L V G   ++TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEHTEVYVRRDEKVHAISFERGVVTKELEVIGDT-DETG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F    +IF     + Y+ L HRLREL++LN  ++IS+ D+R  E R  T  Y+GGI
Sbjct: 60  TRIRFKADPEIFLETTVYEYEILAHRLRELAYLNRGLRISITDEREEEKRVDTFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+++K+P+ + PI I+G +D ISI++AM++N G+ EN+  F NNI   +GGTH 
Sbjct: 120 KSYVEHLNKNKEPIHEDPIFIEGEKDGISIEIAMQYNSGFAENLFSFANNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR +  Y  K+   K+   ++ GDD REG T+++S+K PDP+F  QTK KL +
Sbjct: 180 SGFKTALTRVVNDYARKNGIIKESDPNLSGDDVREGLTAIISVKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV ++  +  ++G   +L E+P+ A++++ K L A+  R AA+ AR+LTRRK  L+++S
Sbjct: 240 SEVSTITNALFSEGFQRFLLENPITARLVIDKSLMAARARIAAKNARELTRRKSALEVSS 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL+DCS RDPK SEL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 300 LPGKLSDCSSRDPKISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            + EI  +ITALGTGIG + FD++K RYHKI+I
Sbjct: 360 GNAEIRMMITALGTGIGGE-FDLSKARYHKIVI 391


>gi|19909621|dbj|BAB87006.1| DNA gyrase subunit B [Oceanospirillum linum]
          Length = 389

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 228/392 (58%), Positives = 292/392 (74%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L + R G ++E  +++G+ + PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLTLTVWRSGKVHEQVYVHGVPETPLRVIGETE-KTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE  F PS + F+  +F+YD L  RLRELSFLNS V I+L D+RS   R     Y+GG+ 
Sbjct: 60  TETRFHPSPETFTNVEFHYDILAKRLRELSFLNSGVSITLTDERSG--RTDNFKYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+++K  L           D   +++A++WND Y EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEYLNQNKTALNDVFHFSAEREDGTGVEVALQWNDSYQENIYCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+E+    KKDK +  G+D REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRTLNNYIEQDPKVKKDKANTSGEDAREGLTAIVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VE  +    + +L E P EAK IV K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKSAVEQEMGRLFADYLLEKPNEAKAIVNKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITA+G GIG++ F+ +KLRYH III
Sbjct: 358 SAEVGTLITAMGCGIGREEFNPDKLRYHSIII 389


>gi|164608632|gb|ABY62607.1| DNA gyrase beta subunit [Vibrio sp. MdR7]
 gi|164608634|gb|ABY62608.1| DNA gyrase beta subunit [Vibrio sp. SA5]
 gi|164608636|gb|ABY62609.1| DNA gyrase beta subunit [Vibrio sp. SA6]
          Length = 398

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 237/400 (59%), Positives = 309/400 (77%), Gaps = 4/400 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  ++L I R+G I++ ++ +G+   PL VT    + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGEIFQQTYCHGVPQAPLAVT-GKTDT 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT++ F PS   F+  +F Y+ L  RLRELSFLNS V I L D R  E +     ++GG
Sbjct: 60  TGTKIRFWPSDQTFANIEFVYEILAKRLRELSFLNSGVSIILQDMR-EEDKSDHFMFEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQ--GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           I+AFV +L+R+K P+ Q           D I++++AM+WND + EN+ C+TNNIPQ+DGG
Sbjct: 119 IQAFVDHLNRNKTPIHQKIFHFDFMREEDGIAVEVAMQWNDSFQENIFCYTNNIPQRDGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G RSALTR + ++++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+K
Sbjct: 179 THLAGFRSALTRTLNTFMDKEGFSKKAKASTSGDDAREGLTAVVSVKVPDPKFSSQTKDK 238

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 239 LVSSEVKSAVESAMGEKLSEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALD 298

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 299 IAGLPGKLADCQEKDPSQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 358

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           KMLSSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 KMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 398


>gi|198250525|gb|ACH85244.1| DNA gyrase subunit B [Bacillus azotoformans]
          Length = 405

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 203/392 (51%), Positives = 275/392 (70%), Gaps = 4/392 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS+ L++ +  +G I+ + F  G +   L V G   + TGT V F P  
Sbjct: 17  LHGVGASVVNALSTELEVFVHLDGKIHYIKFERGAVVEELKVIGET-DKTGTIVHFSPDP 75

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF     + YD L  RLREL+FLN  + + + DKR  E +     Y+GGI ++V +L+R
Sbjct: 76  EIFQETTVYEYDVLATRLRELAFLNRGLNLIIEDKRP-EGKTQHWCYEGGIISYVEHLNR 134

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ + + P+ + G +D I+ ++A+++ND Y  N+  F NNI   +GGTH  G ++ALTR
Sbjct: 135 SREVIHEEPVYVMGEKDGITAEVALQYNDSYVSNIYSFANNIHTYEGGTHEVGFKTALTR 194

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  KS   K++  ++ GDD REG T+++S+K PDP+F  QTK KL +SEVR++V+S
Sbjct: 195 VINDYARKSGMFKENDPNLTGDDVREGLTTIISVKHPDPQFEGQTKTKLGNSEVRAIVDS 254

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++ L  +L E+P   K IV+K L AS  R AA++AR+LTRRKG L+I+SLPGKLADCS
Sbjct: 255 VFSEQLDKFLMENPSVGKKIVEKGLMASRARIAAKKARELTRRKGALEISSLPGKLADCS 314

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D   SEL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++LS+ EI T+I
Sbjct: 315 SKDASISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILSNNEIRTII 374

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           TALGTGIG+D FDI+K RYHKI+IMTDADVDG
Sbjct: 375 TALGTGIGED-FDISKARYHKIVIMTDADVDG 405


>gi|19909633|dbj|BAB87012.1| DNA gyrase subunit B [Roseobacter litoralis Och 149]
          Length = 391

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 243/392 (61%), Positives = 304/392 (77%), Gaps = 1/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WL+LRI REG  +   F  G   + L V G   + TG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTVDHLKVVGDT-DRTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F+ S+D FS  +++++TL+ RLREL+FLNS V+I LID+R  E     +FY+GG++
Sbjct: 60  TEVRFMASTDTFSNLEYSFETLEKRLRELAFLNSGVRIILIDERPAEELRSELFYEGGVK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLDR K  +M  PI I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++
Sbjct: 120 EFVKYLDRSKSSVMPEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMA 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR I +Y + S  ++K+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 180 GFRGALTRTINNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  VN+ L+ W EE+P EAKI+V K+++A+  R+AAR+ARDLTRRK  +D+  L
Sbjct: 240 EVRPAVEGLVNEKLAEWFEENPSEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
            GKL DCSE+DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML 
Sbjct: 300 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLG 359

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIG L+ ALGTGIG+D F+I+KLRYHKI+I
Sbjct: 360 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIVI 391


>gi|289623440|emb|CBK13149.1| DNA gyrase subunit B [Paenibacillus anaericanus]
 gi|289623442|emb|CBK13150.1| DNA gyrase subunit B [Paenibacillus ginsengisoli]
          Length = 389

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 201/393 (51%), Positives = 278/393 (70%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVGVSVVNALS  L + +KREG+I++  +  G     L + G    +TG
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSEKLVVEVKREGHIHQQEYRRGAPQYDLRIIGDTE-ETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+  F P  +IF+    F+Y+ L  R+REL+FLN  + ISL D+R+         Y+GGI
Sbjct: 60  TKTRFHPDPEIFTETTVFDYNILVTRIRELAFLNKGINISLTDERTG--VSEVFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + +V YL++H++ + + PI ++G RD I I++++++ND Y EN+  F NNI   +GGTH 
Sbjct: 118 KEYVKYLNQHREVIHEEPIYVEGQRDQIQIEVSLQYNDSYSENIFSFANNINTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 SGFKSALTRIINDYARKNNLIKDNDSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES   + L  ++EE+P  ++ I+ K L AS  R+AAR+AR+LTRRK  L++++
Sbjct: 238 SEVRGIVESLFAERLQEFMEENPSVSRRILDKGLQASRAREAARKARELTRRKSALEVSA 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            + EI  +ITALGTGIG++ FDI+K RYHK+II
Sbjct: 358 GNAEIRAIITALGTGIGEE-FDISKARYHKVII 389


>gi|167752021|ref|ZP_02424148.1| hypothetical protein ALIPUT_00263 [Alistipes putredinis DSM 17216]
 gi|167660262|gb|EDS04392.1| hypothetical protein ALIPUT_00263 [Alistipes putredinis DSM 17216]
          Length = 624

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 169/613 (27%), Positives = 271/613 (44%), Gaps = 56/613 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           +  ++SY  D+I  L   + ++ RP MYIG     S    G++ +I EV+DN++DE + G
Sbjct: 7   DNTSNSYGDDAIVTLSPREHIRLRPGMYIGKLGDGSQADDGIYVLIKEVVDNSVDEFIMG 66

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I VT+  D   TV D GRGIP         S A  + + ++ GGK+   ++K + G
Sbjct: 67  AGKQIDVTV-EDDIVTVRDYGRGIPL-------KSLAAAV-SEMNTGGKYGGSAFKKTVG 117

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVGV  VN LSS    R  R+G    ++F  G+  +    +G      GT ++F    
Sbjct: 118 LNGVGVKAVNMLSSEFTARSVRDGEARTVTFAQGLEQSDRWESG-VQEKNGTFISFRVDR 176

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           ++F    +N + ++  +R  ++LN  +      +            K G+   +      
Sbjct: 177 EVFGDYSYNLEYVEQMIRNYTYLNLGLTFRFNGQS--------YVSKNGLLDLLGENMTE 228

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           +       I + G      I++A+    GY E+   F N      GGTH +  R A+ + 
Sbjct: 229 EPLYAP--IHLSGED----IEVAIAHGTGYGESYYSFVNGQYTSQGGTHQAAFREAIAKT 282

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV--- 356
           I  +  K              D R    + +S+++ DP F SQTK KL S E+   V   
Sbjct: 283 IKEFYHK---------DYDPSDIRTSIIAAISVRVTDPVFESQTKIKLGSKEIEPGVPLR 333

Query: 357 -------ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
                     ++D L    E   +  K IV+   +        ++    T +K  L+   
Sbjct: 334 NFIVDFLAKHLDDYLHKHSETAQILQKKIVENEKE-RKAISGIQKKARETAKKVSLNNKK 392

Query: 410 LPGKLADC--SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           L              ++S +F+ EG+SA GS  + R    QA+  LRGK LN        
Sbjct: 393 LRDCKIHLTDKNELAEESMIFITEGNSASGSITKSRDVRTQAVFSLRGKPLNCFGLTKKV 452

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++E   L  AL         D++ LRY+K++I TDADVDG HIR LL+TFF +  P 
Sbjct: 453 VYENEEFNLLQAALNI-----EEDMDNLRYNKVVIATDADVDGMHIRLLLMTFFLQFFPD 507

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +I  G LY+++ PL+ +   K   Y   EE      + +  +          G IS ++ 
Sbjct: 508 VIRGGHLYVLQTPLFRVRNKKETHYCYSEEEKNR-AVARCGANAEITRFKGLGEISPDEF 566

Query: 588 RNFIDDALKIDKL 600
           R FI   +++DK+
Sbjct: 567 RGFIGQDIRLDKV 579


>gi|161085582|dbj|BAF93878.1| DNA gyrase B [Sporosarcina sp. YM6-219]
          Length = 391

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 196/393 (49%), Positives = 280/393 (71%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS   ++ ++R+  ++ +SF  G++   L V G   ++TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEHTEVYVRRDEKVHAISFERGVVTKELEVIGET-DETG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F    +IF     + Y+ L HRLREL++LN  ++IS+ D+R  E R  T  Y+GGI
Sbjct: 60  TRIRFKADPEIFLETTVYEYEILAHRLRELAYLNRGLRISITDEREEEKRVDTFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+++K+P+ + PI I+G +D ISI++AM++N G+ EN+  F NNI   +GGTH 
Sbjct: 120 KSYVEHLNKNKEPIHEDPIFIEGEKDGISIEIAMQYNSGFAENLFSFANNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR +  Y  K+   K+   ++ GDD REG T+++S+K PDP+F  QTK KL +
Sbjct: 180 SGFKTALTRVVNDYARKNGIIKESDPNLSGDDVREGLTAIISVKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV ++  +  ++G   +L E+P+ A+++V K L A+  R AA+ AR+LTRRK  L+++S
Sbjct: 240 SEVSTITNALFSEGFQRFLLENPITARLVVDKSLMAARARIAAKNARELTRRKSALEVSS 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL+DCS RDPK SEL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 300 LPGKLSDCSSRDPKISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            + EI  +ITALGTGIG + FD++K RYHKI+I
Sbjct: 360 GNAEIRMMITALGTGIGGE-FDLSKARYHKIVI 391


>gi|66474537|gb|AAY46838.1| GyrB [Aeromonas veronii bv. sobria]
          Length = 385

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 232/388 (59%), Positives = 295/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+
Sbjct: 61  -GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|126035346|gb|ABN72426.1| gyrase B subunit [Vibrio cholerae]
          Length = 386

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 230/388 (59%), Positives = 300/388 (77%), Gaps = 3/388 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV+
Sbjct: 60  FWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVT 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 HLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 GALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 239 SAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 299 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 358

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKII 501
           + TLITALG GIG+D ++ +KLRYH II
Sbjct: 359 VATLITALGCGIGRDEYNPDKLRYHNII 386


>gi|332664037|ref|YP_004446825.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332332851|gb|AEE49952.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 636

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 175/674 (25%), Positives = 283/674 (41%), Gaps = 72/674 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDES 56
           M+   Q  SY+ D+I+ L   + ++ RP MYIG          G++ +I EV+DN IDE 
Sbjct: 1   MAQ--QQVSYNEDNIRSLDWKEHIRLRPGMYIGKLGDGASSDDGIYILIKEVVDNCIDEF 58

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSY 114
           + G+   I + +  D +  + D GRGIP             VI     ++ GGK++ K++
Sbjct: 59  VMGHGKEIQLKI-EDNTAEIRDYGRGIPLGK----------VIDCVSKINTGGKYDSKAF 107

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           K S GL+GVG   VNALS +  ++  R+G +    F  G L              GT VT
Sbjct: 108 KKSVGLNGVGTKAVNALSDYFMVKAVRDGQMKIAEFEKGELLKE-HPIKKTDEPNGTFVT 166

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P + IF    F  D L+++L   ++LNS ++++                K G+   + 
Sbjct: 167 FRPDNVIFKNYRFQKDHLENQLWNYAYLNSGLKLNYNGNII--------TSKNGLLDLLE 218

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
              +++                  +++AM   + Y E    F N      GG+HLS  + 
Sbjct: 219 RKSKNEDLRYPIIHLKADD-----LEVAMSHGNHYGEQYYSFVNGQNTTQGGSHLSAFKE 273

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS----- 349
           A+   +  +   +             D      + +SI++ +P F SQTK KL S     
Sbjct: 274 AVVDTVKKFYNAN---------YDRTDILGSIVAAVSIRVEEPVFESQTKTKLGSVNIAP 324

Query: 350 --SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT-------- 399
               +R+ V + + + L   L +HP  A  + K++L +   R      + L         
Sbjct: 325 EGQTIRTFVGNAIKEHLDNHLRKHPEIADALKKRILQSERERKEIADIKKLANQRAKKAN 384

Query: 400 --RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
              +K               +E     + LF+ EGDSA GS  + R  + QAI  LRGK 
Sbjct: 385 LHNKKLRDCRLHFNDSAKKVAEDMRLATTLFITEGDSASGSITKARDVQTQAIFSLRGKP 444

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LN        +  ++E   L  AL    G     ++ LRY++++I TDADVDG HIR L+
Sbjct: 445 LNCYGLTKKTVYENEEFNLLQHALNIEDG-----MDDLRYNRVVIATDADVDGMHIRLLM 499

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           LTFF +  P L+    LYI++ PL+ +   +   Y   E      +       EI  F  
Sbjct: 500 LTFFLQFFPELVRGNHLYILETPLFRVRDKQQRFYCYSETEKRAAIKKLRGKPEITRF-K 558

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G IS ++   FI   ++++ +I     + D               ++  E    +   
Sbjct: 559 GLGEISPDEFSAFIGPDIRLEPVIISDNTDIDDVLSYYM-------GKNTPERQDFIIGN 611

Query: 638 LANRLNFIAEKSEK 651
           L   LN +  + E+
Sbjct: 612 LRVELNDVETEIEE 625


>gi|126035364|gb|ABN72435.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 389

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 232/391 (59%), Positives = 307/391 (78%), Gaps = 3/391 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT++ 
Sbjct: 1   QVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV 
Sbjct: 60  FWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQ 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 HLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 AALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 239 SAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 299 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 358

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           + TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 VATLITALGCGIGRDEYNPDKLRYHNIIIMT 389


>gi|211927067|dbj|BAG82786.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 390

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 298/393 (75%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G   + L V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTG 59

Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS D F    +F YD L  RLRELSFLNS V I LIDKR  +       Y+GGI
Sbjct: 60  TRVRFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL R K  +  +       +D+I ++++M+WND + ENV CFTNNIPQ+DGG HL
Sbjct: 118 KAFVEYLSRAKTSIHNNVFYFSTEKDDIGVEISMQWNDSFQENVYCFTNNIPQRDGGAHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + SY+EK   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ LS +L+E+P + KIIV K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +SQE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 ASQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|83017248|dbj|BAE53544.1| DNA gyrase B [Microbulbifer sp. MBIC08242]
 gi|83017250|dbj|BAE53545.1| DNA gyrase B [Microbulbifer sp. MBIC08247]
 gi|83017257|dbj|BAE53548.1| DNA gyrase B [Microbulbifer sp. MBIC08245]
 gi|83017266|dbj|BAE53552.1| DNA gyrase B [Microbulbifer sp. MBIC08240]
 gi|142000958|dbj|BAF56100.1| DNA gyrase B [Microbulbifer variabilis]
          Length = 389

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 226/392 (57%), Positives = 296/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E ++ +G+   PL V G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLTIRRGGKIHEQTYHHGVPQAPLEVVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSEDTFSNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EVYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQSQREDGIAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|19909573|dbj|BAB86982.1| DNA gyrase subunit B [Maricaulis maris]
          Length = 393

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 248/393 (63%), Positives = 304/393 (77%), Gaps = 1/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDT 169
           Q SYKVSGGLHGVGVSVVNALS W+ L I R G  + M F  G  +  L V G A     
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWMDLTIWRNGKKHWMRFRRGDAEEDLKVMGDAEPGQK 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV F+PS + F++ +FN +TLQHRLREL+FLNS V+I+L D+R  E    TM Y GG+
Sbjct: 61  GTEVRFMPSEETFTMTEFNRETLQHRLRELAFLNSGVKITLRDEREAELYSDTMVYDGGV 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFV++LDR+K P+   P+ I G +D ++++ A+ WND YHENVLCFTNNIPQ+DGGTHL
Sbjct: 121 AAFVAHLDRNKTPIFTPPVLITGEKDGVAVEAALEWNDSYHENVLCFTNNIPQRDGGTHL 180

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR I +Y   S  + K K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVS
Sbjct: 181 AGFRGALTRIINTYAASSGLASKAKVSISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVS 240

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR  VE  V + L+ W EEHP EAK++V K+++A+  R+AAR+AR+LTRRK  L+I+S
Sbjct: 241 SEVRPAVEGAVGEALAEWFEEHPTEAKMVVGKIIEAAAAREAARKARELTRRKSALEISS 300

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP KSELF+VEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKML
Sbjct: 301 LPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKML 360

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            S+++GTLITALGTGIG+D  +  KLRYHK+II
Sbjct: 361 GSEQVGTLITALGTGIGRDQINYEKLRYHKVII 393


>gi|164608606|gb|ABY62594.1| DNA gyrase beta subunit [Aliivibrio wodanis]
 gi|164608608|gb|ABY62595.1| DNA gyrase beta subunit [Aliivibrio wodanis]
          Length = 398

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 236/400 (59%), Positives = 306/400 (76%), Gaps = 4/400 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  ++L I R+G I++ ++ +G    PL V G+    
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGEIFQQTYCHGEPQAPLAVVGTTDTT 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
             T++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     ++GG
Sbjct: 61  G-TKIRFWPSEQTFTNVEFVYDILAKRLRELSFLNSGVSIILQDMR-EEDKSDHFMFEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           I+AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG
Sbjct: 119 IQAFVTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            HLSG RSALTR + ++++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+K
Sbjct: 179 AHLSGFRSALTRTLNTFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDK 238

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 239 LVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALD 298

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 299 IAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 358

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           KM+SSQE+GTLITALG GIG+D ++ +KLRYH IIIMTDA
Sbjct: 359 KMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 398


>gi|33590318|gb|AAQ22699.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 385

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 226/388 (58%), Positives = 297/388 (76%), Gaps = 4/388 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL + G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGETE-QT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GG
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLR 496
           LSSQE+ TLITALG GIG+D ++ +KLR
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLR 385


>gi|119369928|gb|ABL67978.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 197/422 (46%), Positives = 277/422 (65%), Gaps = 3/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LH+GGKF+   YKVSGGLHGVG SVVNALS+ L + + + G I+   +  G + 
Sbjct: 1   EVIMTVLHSGGKFDGGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVV 60

Query: 157 N-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
              L   G   N   + +   P  D +   D  +  ++     +S           DKR 
Sbjct: 61  AGSLGRWGYRENGNNSSLHTRP-RDFYRNNDLRFGQIKQTYSRISLFEPRTSNLHHDKRE 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
              +     Y+GGI ++V Y++ +K  +  +PI   G  D+I++++AM++  GYHENV+ 
Sbjct: 120 GLEQTKHYHYEGGIASYVEYINENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMS 179

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI   +GGTH  G R+ALTR I  Y  K+   K ++ ++ G+D REG T+V+S+K P
Sbjct: 180 FANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHP 239

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +SEV  +     +D  S +L E+P  AK IV+K + A+  R AA+RA
Sbjct: 240 NPQFEGQTKTKLGNSEVVKITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRA 299

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TR+K  L+I++LPGKLADCS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RG
Sbjct: 300 REVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRG 359

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+A  DK+L+++EI +L TA+GTG G + FD+ K RY K+++MTDADVDG+HIRT
Sbjct: 360 KILNVEKASMDKILANEEIRSLFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGSHIRT 418

Query: 516 LL 517
           LL
Sbjct: 419 LL 420


>gi|83017255|dbj|BAE53547.1| DNA gyrase B [Microbulbifer sp. MBIC08252]
          Length = 389

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 225/392 (57%), Positives = 296/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E ++ +G+   PL V G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLTIRRGGKIHEQTYHHGVPQAPLEVVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D F+  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSEDTFNNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EVYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQSQREDGIAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|302122526|gb|ADK92932.1| DNA gyrase subunit B [Geobacillus jurassicus]
          Length = 388

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 202/391 (51%), Positives = 272/391 (69%), Gaps = 4/391 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS WL++ + R+G I+   +  G     L V G   + TGT   
Sbjct: 1   KVSGGLHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTR 59

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P  +IF+    F+Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V
Sbjct: 60  FKPDPEIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNE-YVYEGGIRSYV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+R ++ L + PI I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG +
Sbjct: 119 RHLNRTREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR I  Y  K    K +  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R
Sbjct: 179 MALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDAR 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           +V ++  ++    +L EHP  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGK
Sbjct: 239 TVTDAVFSEQFETFLLEHPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D +LS+ E
Sbjct: 299 LADCSSRDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDXILSNNE 358

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           +  +ITALGTGIG+D FDI+K RYHKIIIMT
Sbjct: 359 VRAIITALGTGIGED-FDISKARYHKIIIMT 388


>gi|3985962|dbj|BAA34866.1| DNA gyrase subunit B protein [Nitrosospira multiformis ATCC 25196]
          Length = 389

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 234/392 (59%), Positives = 302/392 (77%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS WL+L I+R+G I+++ F  G+   PL  TG      G
Sbjct: 1   SDSYKVSGGLHGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVGPLATTGKTE-RRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV FL S +IF   +++YD    RLRELSFLN+ V+I LID+R+ +    T  + GG++
Sbjct: 60  TEVHFLASKEIFGDIEYHYDIFAKRLRELSFLNNGVKIHLIDQRNAKE--ETFAFVGGVK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +FV Y++R K  L  +     G +D I+++++M+WND Y E VLCFTNNIPQKDGGTHL+
Sbjct: 118 SFVEYVNRTKSVLHPNIFYAAGEKDRIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR + +Y+EKS  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSS
Sbjct: 178 GLRAAMTRTLNNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVE  V+  L+ +L EHP++AKII  K+++A+  R+AAR+AR+LTRRKGVLD   L
Sbjct: 238 EVRPVVEEIVSLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEI +LITALGTGIG+D ++ +KLRYH+III
Sbjct: 358 SQEIASLITALGTGIGKDEYNPDKLRYHRIII 389


>gi|18147175|dbj|BAB83068.1| DNA gyrase subunit B [Alcanivorax sp. 12W-23]
          Length = 390

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 236/393 (60%), Positives = 300/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G+  + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQLYRHGVPAMPLEVVGNT-DSSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS + F+   F+YD L  RLRELSFLNS V+I L+D+R+ E       Y GG+ 
Sbjct: 60  TAIHFRPSPETFTNIKFHYDILAKRLRELSFLNSGVRIHLLDERNGEE--DVFEYDGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFVSYL+++K PL Q          D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVSYLNQNKTPLNQVFHFQFDREEDGIAVEVAMQWNDSYQENLFCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + SY+EK    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRTLNSYMEKEGLLKKEKANPTGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  + +    +L E+P EAK I  K++DA+  RDAAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKSAVEQTMGELFQDYLLENPQEAKAISSKIIDAARARDAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+GTLITALG GIG+D +++ KLRYH+III
Sbjct: 358 SSQEVGTLITALGCGIGRDEYNVEKLRYHRIII 390


>gi|328947271|ref|YP_004364608.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Treponema succinifaciens DSM 2489]
 gi|328447595|gb|AEB13311.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Treponema succinifaciens DSM 2489]
          Length = 697

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 164/586 (27%), Positives = 259/586 (44%), Gaps = 47/586 (8%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           +++  Y  D I  L  L+ ++ R  MYIG     S    G++ ++ EV+DNA+DE + G+
Sbjct: 92  LKSKDYGDDKIIHLDALEHIRLRSGMYIGRLGDGSNQNDGIYILLKEVVDNAVDEFIMGF 151

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I + +  D    V D GRGIP            E + + ++ G K+N   ++ S G+
Sbjct: 152 GKKIEIEV-KDSRVKVRDYGRGIPLGK-------VVECV-SEINTGAKYNDDVFQFSVGM 202

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALSS+ ++   R G   E  F  G L +            GT   F+P   
Sbjct: 203 NGVGTKAVNALSSYFRVVSVRAGQCAEAVFEQGKLVSQRSGNLKQKQPDGTYFEFVPDEA 262

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF   +FN + ++ R+   ++LN+ + + L  K              G+   ++      
Sbjct: 263 IFGKYNFNMEFVEKRIWNYAYLNAGLTLKLNGKE--------YKSDNGLFDLLNKEIEGT 314

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
                      GS     +  A    + Y EN   F N     DGGTHL+  +    + I
Sbjct: 315 SL------YAIGSYQGDRLKFAFTHTNSYGENYFSFVNGQYTADGGTHLAAFKEGFVKGI 368

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             +            S   +D REG  + + +K+ DP F SQTK KL ++++R  + S  
Sbjct: 369 NDFY---------GTSYKSEDIREGMAAAVLVKVKDPVFESQTKNKLGNTDIRQWIVSET 419

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
             GL  WL  +P  AK I +K+     +R      +    ++    I+    KL DC   
Sbjct: 420 QSGLDDWLHHNPEAAKKIQEKIQANEKLRTELSAVKKE-AKEAARKISIRIPKLKDCRFH 478

Query: 421 -----DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
                  + S +F+ EGDSA G+    R+ + QAI  LRGK  N+   +  ++  + E+ 
Sbjct: 479 IQDGAKGENSMIFITEGDSASGTMTHSRNADYQAIFSLRGKPENMYGKKQSEIYKNDELY 538

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L+ ALG        D+  L+Y KI+I TDAD DG HIR L++TFF      L+ +G ++
Sbjct: 539 QLMMALGI-----EQDVENLKYSKIVIATDADNDGFHIRNLVMTFFLGYFEELVTSGRIF 593

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
           I++ PL+ +   K   Y   EE  +        S E   F     +
Sbjct: 594 ILETPLFRVRNKKENIYCYSEEERDKAQKKLGSSAETTRFKGLGEI 639


>gi|33590334|gb|AAQ22707.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 385

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 228/388 (58%), Positives = 299/388 (77%), Gaps = 4/388 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    YKGG
Sbjct: 60  GTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYKGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRTAMTRTLNSYMDKEGYNKKSKDSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLR 496
           LSSQE+ TLITALG GIG+D ++ +KLR
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLR 385


>gi|254169593|gb|ACT64887.1| DNA gyrase B subunit [Shewanella haliotis]
          Length = 390

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 227/393 (57%), Positives = 300/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G    P+   G A   TG
Sbjct: 1   DHSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEAT-KTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS + F+  +F+Y+ L  R+RELSFLNS V I LID+R  +       Y+GGI+
Sbjct: 60  TEIRFWPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLIDERDNKD--EFFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+R+K P+ +        R++ I++++AM+WNDG+ E++ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGFQESIFCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  
Sbjct: 238 SEVKGAVEQTMAEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKGALDLGG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D +D  K RYH III
Sbjct: 358 SSQEVATLITALGCGIGRDEYDPEKTRYHYIII 390


>gi|126035350|gb|ABN72428.1| gyrase B subunit [Vibrio cholerae]
          Length = 385

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 229/387 (59%), Positives = 299/387 (77%), Gaps = 3/387 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV
Sbjct: 60  RFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 119 THLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 179 RGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 239 KSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 299 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHK 499
           E+ TLITALG GIG+D ++ +KLRYH 
Sbjct: 359 EVATLITALGCGIGRDEYNPDKLRYHN 385


>gi|126035220|gb|ABN72363.1| gyrase B subunit [Escherichia coli]
          Length = 387

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 236/390 (60%), Positives = 300/390 (76%), Gaps = 4/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|66474497|gb|AAY46818.1| GyrB [Aeromonas veronii bv. sobria]
          Length = 385

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 231/388 (59%), Positives = 295/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AF  YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFFEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|297614606|gb|ADI48605.1| DNA gyrase subunit B [Shewanella sp. KJW27]
          Length = 388

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 227/391 (58%), Positives = 302/391 (77%), Gaps = 4/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G    P+   G A   TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEAT-KTGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS + F+  +F+Y+ L  R+RELSFLNS V I L+D+R  +       Y+GGI+AF
Sbjct: 60  IRFWPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLVDERDNKD--ELFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V YL+R+K P+ +        R++ I++++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G
Sbjct: 118 VEYLNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAALTRNLNNYMEKEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LP
Sbjct: 238 VKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D +D +K RYH III
Sbjct: 358 QEVATLITALGCGIGRDEYDPDKTRYHYIII 388


>gi|328349709|emb|CBY89162.1| GyrB protein [Flavobacterium sp. R-36668]
          Length = 412

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 188/413 (45%), Positives = 266/413 (64%), Gaps = 11/413 (2%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPL 159
           T++ AGGKF++ SYKVSGGLHGVGVSVVNALS  L+  +   +G +YE  +  G    P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSSDGKVYEQEYERGKALYPV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
              G      GT VTF P   IF+   +F YDTL  R+RELSFLN  + I+  DKR  + 
Sbjct: 61  KQIGETT-KRGTIVTFYPDPIIFTQTVEFAYDTLSARMRELSFLNKGITITFTDKREVDK 119

Query: 219 R----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                        G++ +V YLD +++P++   I +   +  + +++A+ +N  Y EN+ 
Sbjct: 120 DGNFVSEIFHSDEGLKEYVRYLDANREPIISHVISMNSEKGEVPVEVALIYNTSYTENIF 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+
Sbjct: 180 AYVNNINTHEGGTHLQGFRTGLTRALKKYADSSGMLDKLKFEIAGDDFREGLTAIISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL + EV + V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA++
Sbjct: 240 SEPQFEGQTKTKLGNREVVAPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAKK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPLR
Sbjct: 300 AREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEVYLVEGDSAGGTAKQGRDRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIM 503
           GKILNVE+A   K+  ++EI  + TALG  IG +      +I+KLRYHK+IIM
Sbjct: 360 GKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALNISKLRYHKVIIM 412


>gi|12644446|sp|Q44274|GYRB_ACIGB RecName: Full=DNA gyrase subunit B
 gi|11270914|pir||T43903 DNA gyrase chain B [imported] - Acinetobacter sp. (fragment)
 gi|4514417|dbj|BAA75407.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 389

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 232/392 (59%), Positives = 291/392 (74%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L I R G+I++  + +G    PL + G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKIVGDVE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TIVRFWPSTETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVA--LEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINQGKTHLNEIFHFTTQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+GTLITALG GIG++ ++ +KLRYHKIII
Sbjct: 358 SQEVGTLITALGCGIGREEYNPDKLRYHKIII 389


>gi|289806573|ref|ZP_06537202.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 183

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 109/179 (60%), Positives = 139/179 (77%), Gaps = 1/179 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS + F+  
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179


>gi|260910858|ref|ZP_05917502.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635009|gb|EEX53055.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 680

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 157/563 (27%), Positives = 251/563 (44%), Gaps = 55/563 (9%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
            N    +Y  D+I+ L  ++ V+ RP MYIG     +    G++ ++ EV+DN+IDE   
Sbjct: 34  QNNNQPAYTDDNIRHLSDMEHVRTRPGMYIGRLGDGTQAEDGIYVLLKEVIDNSIDEFKM 93

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I V L  D   +V D GRGIP            E + + L+ GGK++ K+++ S 
Sbjct: 94  QAGKRIEVDLEDDLRVSVRDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFQKSV 145

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVG+  VNALS   + R  REG +  + F  G L +    T S   + GT V F P 
Sbjct: 146 GLNGVGLKAVNALSVRFEARSYREGKVRTVVFERGELISD--NTESTNEENGTFVFFEPD 203

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I    +R           + G+   ++    
Sbjct: 204 NTLFLNYRFKAEFVETMLRNYTYLNAGLAIMHNGRRI--------ISRNGLADLLNDRMT 255

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +    +   I IQG      I++A    + Y E    F N      GGTH S  +  + +
Sbjct: 256 N--DGLYPIIHIQGED----IEIAFTHANQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAK 309

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS---SEVRSV 355
            I  +  K++            D R G  + ++I + +P F SQTK KL S   S     
Sbjct: 310 TIKDFFSKNYEY---------VDIRNGMVAAIAINVQEPMFESQTKIKLGSLTMSPGGES 360

Query: 356 VESFVNDGLSAWLEEHPLEA-------KIIVKKVLDASMVRDAARRARDLTRRKGVLDI- 407
           V  +V D +   ++ +           K  + +            +      +K  L   
Sbjct: 361 VNKYVGDFIKREVDNYLHIHADVAEELKRKIDESERERKAMAGVTKMARERAKKANLHNR 420

Query: 408 --ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
                    +D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN      
Sbjct: 421 KLRDCRIHFSDVKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTK 480

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
             +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  
Sbjct: 481 KVVYENEEFNLLQAALDIEEG-----LDTLRYNKVIVATDADVDGMHIRLLIITFFLQFF 535

Query: 526 PSLIHNGFLYIIKPPLYGITRGK 548
           P L+  G +Y+++ PL+ +   +
Sbjct: 536 PELVKKGHVYVLQTPLFRVRNRR 558


>gi|82568127|dbj|BAE48498.1| DNA gyrase B [Thermoactinomyces intermedius]
          Length = 391

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 205/393 (52%), Positives = 279/393 (70%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YK SGGLHGVGVSVVNALS+WL + +KR+G IY   +  G+ +  L V G    +TG
Sbjct: 1   GDGYKFSGGLHGVGVSVVNALSTWLSVEVKRDGKIYHQRYQRGVPEADLEVIGETE-ETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T++TF P  +IF+    F+++ LQ+RLREL+FLN  V+I L D R  E +E+   ++GGI
Sbjct: 60  TKITFKPDPEIFTETTEFDFNILQNRLRELAFLNGGVKIILKDLRGEEEKEVVFQFEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +L+R+++ L Q P+ IQG RD+I I++A+++ND +  N+  + NNI   +GGTH 
Sbjct: 120 RSFVEHLNRNREVLNQPPVYIQGERDSILIEIALQYNDSFTSNIYSYANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  ++   K +  ++ GDD REG T+++S+K+ DP+F  QTK KL +
Sbjct: 180 AGFKSALTRVINDYARRNNLLKDNDSNLTGDDVREGLTAIISVKIMDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE RS  E    D    +L+EHP EAK I+ K + AS  R AAR+AR+LTRRK  L++++
Sbjct: 240 SEARSATEQLFADHFQTYLDEHPAEAKKIINKAVMASRARQAARKARELTRRKNALEVSA 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ R  + SELF+VEGDSAGG+AKQGR R  QAILPL+GKI+NVE+AR D+ L
Sbjct: 300 LPGKLADCTSRSAQDSELFIVEGDSAGGTAKQGRDRMFQAILPLKGKIINVEKARLDRAL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI T+ITALGTGIG D F+I K RYHKIII
Sbjct: 360 SNDEIRTIITALGTGIG-DDFNIEKARYHKIII 391


>gi|83017284|dbj|BAE53560.1| DNA gyrase B [Microbulbifer sp. MBIC06494]
 gi|83017286|dbj|BAE53561.1| DNA gyrase B [Microbulbifer sp. MBIC08243]
          Length = 389

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 225/392 (57%), Positives = 297/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E ++ +G+   PL V G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSRELKLTIRRGGKIHEQTYHHGVPQAPLEVVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS+D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSADTFSNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSAKE--EIYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQSQREDGIAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNTYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGQHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|83853999|gb|ABC47937.1| gyrase B subunit [Vibrio cholerae O1 biovar El Tor]
          Length = 385

 Score =  356 bits (914), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 230/387 (59%), Positives = 300/387 (77%), Gaps = 3/387 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS+  F+  +F+YD L  RLRELSFLNS V I LID+R  E ++    Y+GGI+AFV
Sbjct: 60  RFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKKDHFMYEGGIQAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 119 THLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 179 RGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 239 KSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 299 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHK 499
           E+ TLITALG GIG+D ++ +KLRYH 
Sbjct: 359 EVATLITALGCGIGRDEYNPDKLRYHN 385


>gi|33590350|gb|AAQ22715.1| DNA gyrase subunit B [Photorhabdus temperata subsp. khanii]
          Length = 397

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 227/387 (58%), Positives = 298/387 (77%), Gaps = 4/387 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-Q 59

Query: 169 TGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT V F PS D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    YKG
Sbjct: 60  TGTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYKG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+AFV +L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 118 GIKAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KL
Sbjct: 178 HLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+
Sbjct: 238 VSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDL 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 298 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINK 494
           MLSSQE+ TLITALG GIG+D ++ +K
Sbjct: 358 MLSSQEVATLITALGCGIGRDEYNPDK 384


>gi|330872226|gb|EGH06375.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 416

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 159/426 (37%), Positives = 232/426 (54%), Gaps = 11/426 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   L+H L+  + L   + +S  DK + E  E             S  D  
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSTNEKVEWHYEDGLRSYLQDSVSDFL 235

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           + P         G+++ +     +   +G       + N IP   GGTH++GLR  L   
Sbjct: 236 RLPDEPFCGSFAGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDA 294

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+L S E  + V   
Sbjct: 295 MREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 353

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL  H      +    ++ +       +A     RK +    +LPGKLADC+ 
Sbjct: 354 VKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQGPALPGKLADCAG 410

Query: 420 RDPKKS 425
           +DP +S
Sbjct: 411 QDPARS 416


>gi|126035218|gb|ABN72362.1| gyrase B subunit [Escherichia coli]
 gi|126035226|gb|ABN72366.1| gyrase B subunit [Escherichia coli]
 gi|126035232|gb|ABN72369.1| gyrase B subunit [Escherichia coli]
          Length = 387

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 235/390 (60%), Positives = 300/390 (76%), Gaps = 4/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHNII 387


>gi|328349713|emb|CBY89164.1| GyrB protein [Flavobacterium sp. R-36523]
          Length = 405

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 183/402 (45%), Positives = 259/402 (64%), Gaps = 7/402 (1%)

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFIN 152
           SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS  L+  +   +G +YE  +  
Sbjct: 1   SALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSSDGKVYEQEYER 60

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLI 211
           G    P+   G      GT VTF P   IF+   +F YDTL  R+RELSFLN  + I+  
Sbjct: 61  GKALYPVKQIGETT-KRGTIVTFYPDPIIFTQTVEFAYDTLSARMRELSFLNKGITITFT 119

Query: 212 DKRSPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           DKR  +              G++ +V YLD +++P++   I +   +  + +++A+ +N 
Sbjct: 120 DKREVDKDGNFVSEIFHSDEGLKEYVRYLDANREPIISHVISMNSEKGEVPVEVALIYNT 179

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T
Sbjct: 180 SYTENIFAYVNNINTHEGGTHLQGFRTGLTRALKKYADSSGMLDKLKFEIAGDDFREGLT 239

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++S+K+ +P+F  QTK KL + EV + V   V++ +  +LEE+P +A+IIV+KV+ A+ 
Sbjct: 240 AIISVKVSEPQFEGQTKTKLGNREVVAPVSQAVSEMIENYLEENPNDARIIVQKVILAAQ 299

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  
Sbjct: 300 ARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEVYLVEGDSAGGTAKQGRDRAF 359

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG + 
Sbjct: 360 QAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTED 401


>gi|317420202|emb|CBW30258.1| gyrase B subunit [Pseudoalteromonas nigrifaciens]
          Length = 390

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 236/392 (60%), Positives = 302/392 (77%), Gaps = 6/392 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  LKL I+REG ++E ++ +G+ D PL + G A + TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYSHGVPDAPLALIGDA-DTTGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS   F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI AF
Sbjct: 60  LRFWPSDQTFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIRAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           V YL+R+K P+ +           D I ++++M+WND Y EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 VEYLNRNKTPIHKGVFHFTHTREEDGIVVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 GFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + +  + +L EHP +AKI+V K++DAS  R+AAR+AR++TRRKG +D+A
Sbjct: 239 SSEVKSAVEQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           LSSQE+ TLITALG GIG+D ++  KLRYH+I
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPEKLRYHRI 390


>gi|307939310|gb|ADN95846.1| DNA gyrase B [Bacteroidetes bacterium P3(2010)]
          Length = 428

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 203/429 (47%), Positives = 286/429 (66%), Gaps = 21/429 (4%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT L AGGKF++ SYKVSGGLHGVGVS VNALS+ LK+ ++R G++YE  +  G     +
Sbjct: 1   MTVLXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHMYEQEYKIGFPQYDV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---- 215
              G   ++ GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R     
Sbjct: 61  KQVGDT-DEHGTEVQFLPDASIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLEG 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
            E R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV 
Sbjct: 120 GEFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVY 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+
Sbjct: 180 SYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+
Sbjct: 240 MEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLR
Sbjct: 300 AKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLRYHK 499
           GKILNVE+A+  ++L ++EI  +ITALG                G      + +KLRYHK
Sbjct: 360 GKILNVEKAQEHRILENEEIKNMITALGVSFNERKSLAFTTDDDGTESGPLNFSKLRYHK 419

Query: 500 IIIMTDADV 508
           +IIMT ADV
Sbjct: 420 VIIMTXADV 428


>gi|33590352|gb|AAQ22716.1| DNA gyrase subunit B [Photorhabdus temperata subsp. tasmaniensis]
          Length = 385

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 227/388 (58%), Positives = 299/388 (77%), Gaps = 4/388 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    Y+GG
Sbjct: 60  GTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRTAMTRTLNSYMDKEGYTKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLR 496
           LSSQE+ TLITALG GIG+D ++ +KLR
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLR 385


>gi|148470246|gb|ABQ66070.1| gyrase b [uncultured bacterium]
 gi|148470250|gb|ABQ66072.1| gyrase b [uncultured bacterium]
          Length = 417

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 192/418 (45%), Positives = 277/418 (66%), Gaps = 7/418 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L L I ++GN +   +  GI +
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQIYHKGIPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +PL         TGT + F P   I     F++D L HR REL +LN ++ I  I +   
Sbjct: 61  SPLA-ITGTSETTGTSIRFYPDLTIMETDAFSFDVLAHRFRELGYLNPALTI--ILREEE 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+ +++ +K+ +       +   +  + +++ ++ D    E +L 
Sbjct: 118 TLREEVFHDEGGIRSFLLFINENKRTIHDPLSFRKSFDNGSTFEVSFQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GGTH+ G R+ALTR +  ++++   +K ++  V G+D REG ++++SIK+P
Sbjct: 178 YVNNIPTREGGTHVRGFRAALTRVVNRFIKEKNLNKGEE--VKGEDIREGLSAIISIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V   +E+F+ + L    E+    A+ I  K + ++  R+AAR+A
Sbjct: 236 NPQFEGQTKAKLGSSWVSGAMETFLAESLEDAFEKQGAVARAIADKAILSAQAREAARKA 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LT+RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+G
Sbjct: 296 RELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           KILNVE+++  +K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+H
Sbjct: 356 KILNVEKSKGVEKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGSH 413


>gi|157060424|gb|ABV03218.1| GyrB [Chlamydia trachomatis]
          Length = 392

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 164/401 (40%), Positives = 236/401 (58%), Gaps = 15/401 (3%)

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K
Sbjct: 2   ARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQK 61

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +QEIG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +
Sbjct: 62  VFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSA 121

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI N  +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L
Sbjct: 122 LIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEAL 181

Query: 588 RNFIDDALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             F++  L+++  I            F++              E      S L +     
Sbjct: 182 ETFVNLILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH---- 237

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
            E+ E +   +  ++  +++     V E+   +          Y     + I  +     
Sbjct: 238 -EEKEAAIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP- 295

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
                           ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV
Sbjct: 296 ----KISPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRV 351

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
            + DA +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 352 SLKDAVEADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 392


>gi|126035262|gb|ABN72384.1| gyrase B subunit [Enterobacter cloacae]
 gi|126035264|gb|ABN72385.1| gyrase B subunit [Enterobacter cloacae]
          Length = 389

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 238/391 (60%), Positives = 303/391 (77%), Gaps = 4/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ D PL VTG   + TGT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTGTM 60

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 61  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 239 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|126035208|gb|ABN72357.1| gyrase B subunit [Escherichia coli]
 gi|126035324|gb|ABN72415.1| gyrase B subunit [Shigella boydii]
 gi|126035332|gb|ABN72419.1| gyrase B subunit [Shigella flexneri]
 gi|126035334|gb|ABN72420.1| gyrase B subunit [Shigella flexneri]
          Length = 387

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 235/390 (60%), Positives = 300/390 (76%), Gaps = 4/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|126035296|gb|ABN72401.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 386

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 235/389 (60%), Positives = 300/389 (77%), Gaps = 4/389 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I I++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 238 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKII 501
           E+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYHSII 386


>gi|33590330|gb|AAQ22705.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 385

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 228/388 (58%), Positives = 299/388 (77%), Gaps = 4/388 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    YKGG
Sbjct: 60  GTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYKGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLR 496
           LSSQE+ TLITALG GIG+D ++ +KLR
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKLR 385


>gi|18147145|dbj|BAB83053.1| DNA gyrase subunit B [Alcanivorax borkumensis]
          Length = 390

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 239/393 (60%), Positives = 302/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G   + +G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+ 
Sbjct: 60  TAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFVSYL+ +K PL Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + SY++K    KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+GTLITALG GIG+D ++I KLRYH+III
Sbjct: 358 SSQEVGTLITALGCGIGRDEYNIEKLRYHRIII 390


>gi|531259|dbj|BAA07145.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 389

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 223/392 (56%), Positives = 299/392 (76%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  THIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K P+          R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKTPVNSQVFHFNVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G RS+LTR + +Y+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRSSLTRSLNNYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMNKFFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+
Sbjct: 298 LPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMI 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SSQE+GTLITALG GIG++ ++I+KLRYH II
Sbjct: 358 SSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|83017297|dbj|BAE53566.1| DNA gyrase B [Microbulbifer elongatus]
          Length = 389

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 228/392 (58%), Positives = 297/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E  + +G+ D PL V G +   TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELKLTIRRGGKIHEQVYRHGVPDAPLTVVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS  +F+++ L  RLRELSFLNS V+I L D+R+ +       Y+GG+ 
Sbjct: 60  TSVHFKPSAETFSNIEFHFEQLAKRLRELSFLNSGVRIVLGDERTGKE--EVYEYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQNQREDGIAVEVALQWNDSFQENIYCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+EK    KKDK S  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNNYIEKEGVGKKDKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +   L+ +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGQSLNDYLLENPQEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|210142368|dbj|BAG80975.1| DNA gyrase subunit B [Paenibacillus antarcticus]
          Length = 389

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 200/393 (50%), Positives = 282/393 (71%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVGVSVVNALS  + + +KREG+IY+  +  G     + V G + ++ G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSEKVVVTVKREGHIYQQEYRRGAPQYDVKVIGDS-DEHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T VTF P  +IF+    ++Y TL  R+RE++FLN  + ++L D+R+     +   Y+GGI
Sbjct: 60  TTVTFHPDPEIFTETTEYDYATLLTRVREIAFLNKGIALTLNDERTESS--VRFMYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + +V +L+  K+ L + PI ++GSRD + +++A+++ND Y EN+  F NNI   +GGTH 
Sbjct: 118 KEYVKFLNEKKEALHEEPIYVEGSRDMMQVEVALQYNDSYTENIYSFCNNINTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K    ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 SGFKSALTRIINDYARKTGVIKDSNSNLSGDDVREGLTAIISVKIPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES  ++ L  +LEE+P  ++ I++K L AS  R+AAR+AR+LTRRK  L++++
Sbjct: 238 SEVRGIVESLFSEKLQEFLEENPAVSRRILEKGLQASRAREAARKARELTRRKSALEVSA 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITA+GTGIG+D FD++K RYHK+II
Sbjct: 358 SNAEIRNMITAMGTGIGED-FDLSKARYHKVII 389


>gi|157073801|dbj|BAF79899.1| gyrase B [Methylobacterium radiotolerans JCM 2831]
          Length = 399

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 246/399 (61%), Positives = 306/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALSSWL+LRI R    + M F +G    PL V G      G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVIGPGNGRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y+GGIE
Sbjct: 61  TEVTFLPSTETFTMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYEGGIE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M SP+ +   RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPIDGMTSPVVVSSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQ+T Y E S  +KK+K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENVLNEGLSTWLEENPSQARSVMGKVVLAASAREAARKARETVTRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+  KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|110612667|gb|ABG78296.1| GyrB [uncultured bacterium]
          Length = 402

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 215/402 (53%), Positives = 286/402 (71%), Gaps = 6/402 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F++ +YKVSGGLHGVGVSVVNALS  LK+ + REG I+  S+  G  + P+  TG    D
Sbjct: 2   FDKGAYKVSGGLHGVGVSVVNALSENLKVEVYREGKIWTQSYKRGKPEGPVEATGKT-QD 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GT VTF P +DIF+   F+YD L +RLRE++FLN+  +I++ID+   +       Y+GG
Sbjct: 61  HGTRVTFKPDADIFNEIKFSYDVLSNRLREIAFLNAGAKITIIDEHDDKKHT--FHYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  FV +L+ +KKPL   PI    ++++  +D A+++N+ Y ENV  F N+I   DGGTH
Sbjct: 119 ISQFVRFLNANKKPLHVEPISSSKTKEDTVVDFAIQYNEDYSENVFSFVNDIKTPDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G RSALTR I  Y++K    K    +V GDD REG  +V+SIK+P+P+F  QTK KL 
Sbjct: 179 LAGFRSALTRVINDYIKKYDLLKGKNFAVTGDDVREGLCAVISIKIPNPQFEGQTKTKLG 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           + EV  +V+S V + L  + EE+P  AK I +K + A+  R+AA++ARDLTRRKGVLD +
Sbjct: 239 NQEVEGIVKSIVGESLGIFFEENPATAKAISQKAIAAAEAREAAKKARDLTRRKGVLDGS 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ER+P++SELF+VEGDSAGGSAKQGR R  QAILP++GKILNVE+AR  K+
Sbjct: 299 SLPGKLADCQEREPERSELFIVEGDSAGGSAKQGRDRVFQAILPIKGKILNVEKARLVKI 358

Query: 469 LSSQEIGTLITALGTGI---GQDSFDINKLRYHKIIIMTDAD 507
           LS++E+ TLI A+GTGI   G + F I KLRYHK+ IMTDAD
Sbjct: 359 LSNEEVRTLIAAIGTGIGSEGDEGFKIEKLRYHKLSIMTDAD 400


>gi|313574587|emb|CBX26146.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574589|emb|CBX26147.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574593|emb|CBX26149.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 274/392 (69%), Positives = 331/392 (84%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKVHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S + F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPETFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQEELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  P+ I+G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPVAIKGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|317420206|emb|CBW30260.1| gyrase B subunit [Pseudoalteromonas translucida]
          Length = 389

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 236/391 (60%), Positives = 301/391 (76%), Gaps = 6/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  LKL I+REG ++E ++ +G+ D PL V G A + TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYTHGVPDAPLAVIGDA-DTTGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS   F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI AF
Sbjct: 60  LRFWPSDQTFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIRAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           V YL+R+K P+ +           D I ++++M+WND Y EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 VEYLNRNKTPIHKGVFHFTHTREEDGIVVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 GFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + +  + +L EHP +AKI+V K++DAS  R+AAR+AR++TRRKG +D+A
Sbjct: 239 SSEVKSAVEQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           LSSQE+ TLITALG GIG+D ++  KLRYH+
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPEKLRYHR 389


>gi|19909625|dbj|BAB87008.1| DNA gyrase subunit B [Terasakiella pusilla]
          Length = 402

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 246/402 (61%), Positives = 314/402 (78%), Gaps = 11/402 (2%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--- 168
            SYKVSGGLHGVGVSVVNALS WL+L I R+G  + + F NG    PL V G A      
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSDWLELNIYRDGKEHFVRFENGESVEPLKVIGDAPVKADG 60

Query: 169 ---TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT VTF  S +IF++ +++Y+TL+HRLREL+FLNS V++ L D+R  E +E  + Y
Sbjct: 61  TAENGTRVTFHASDEIFAITEYDYNTLEHRLRELAFLNSGVRMLLRDERHAETKETLLHY 120

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNNI 280
           +GG+  FV Y+DR K  ++  P+ + GSR     D + ++++M+WND YHENV+CFTNNI
Sbjct: 121 EGGLLEFVKYVDRSKTAILPEPVFMTGSREDNNGDEVGVEVSMQWNDSYHENVMCFTNNI 180

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL+G R ALTR + +Y ++S  +KK K ++ G+D REG T+V+S+K+PDP+FS
Sbjct: 181 PQRDGGTHLAGFRGALTRTVNTYAQESGLAKKMKVTIAGEDIREGLTAVVSVKVPDPKFS 240

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR VV++ V + L  W EEHP EA+ I+ K+ +A+  RDAAR+AR+LTR
Sbjct: 241 SQTKDKLVSSEVRPVVKNLVGEALKEWFEEHPNEARQIIGKICEAAAARDAARKARELTR 300

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKGV+DI+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQGR R++QAILPL+GKILNV
Sbjct: 301 RKGVMDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRDRKSQAILPLKGKILNV 360

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ERARFDKMLSSQE+GTLITALGTGIG+D F+I+K RYHKIII
Sbjct: 361 ERARFDKMLSSQEVGTLITALGTGIGRDDFNIDKCRYHKIII 402


>gi|313574591|emb|CBX26148.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 273/392 (69%), Positives = 330/392 (84%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKVHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S + F++ D++Y TL+HRLREL+FLNS V+I L DK   + ++  + Y GG+E
Sbjct: 61  TEVTFLASPETFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKSHSDVKQEELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  P+ I+G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPVAIKGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|33590354|gb|AAQ22717.1| DNA gyrase subunit B [Photorhabdus sp. Q614]
          Length = 385

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 229/388 (59%), Positives = 297/388 (76%), Gaps = 4/388 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELIIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFW 59

Query: 177 PSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS D F    +F +D L  RLRELSFLNS V I LIDKR+         Y+GGI+AFV +
Sbjct: 60  PSMDTFRDNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGGIKAFVEF 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A
Sbjct: 118 LNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 MTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 238 VETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIM 503
           TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 TLITALGCGIGRDEYNPDKLRYHSIIIM 385


>gi|126035260|gb|ABN72383.1| gyrase B subunit [Enterobacter cloacae]
          Length = 388

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 237/391 (60%), Positives = 303/391 (77%), Gaps = 4/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSIII 388


>gi|23978220|dbj|BAC21108.1| DNA gyrase B subunit [Nostoc linckia]
          Length = 396

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 188/395 (47%), Positives = 262/395 (66%), Gaps = 7/395 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I V +N DGS TV+D+GRGIPTD H   G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHIEVDINADGSVTVTDDGRGIPTDTHSRTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVG+SVVNALS  +++ + R+  ++   +  G   
Sbjct: 62  ETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEIVEVTVWRDKKVHIQRYERGAPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L V       TGT VTF P S IF+   +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TDLQVKPYKEARTGTSVTFKPDSQIFTTGIEFDYITLSGRLRELAYLNAGVKITFTDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S  P+  +  YKGGI+ +++Y++R K+PL +  I +QG R+N+ ++++++W  D Y
Sbjct: 182 ELLKSDTPKVESYEYKGGIKEYIAYMNREKQPLHEEIIYVQGERNNVQVEVSLQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G+  REG T+V
Sbjct: 242 TDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNLSGEHVREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE HP  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPSIADAILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +AAR AR+L RRK VL+ + LPGKLADCS RDP +
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDPSE 396


>gi|18147177|dbj|BAB83069.1| DNA gyrase subunit B [Alcanivorax sp. Nag-2]
          Length = 389

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 240/392 (61%), Positives = 303/392 (77%), Gaps = 4/392 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G   + +GT 
Sbjct: 1   TYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSSGTA 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F PS + FS   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+ AF
Sbjct: 60  VHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGLSAF 117

Query: 233 VSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           VSYL+ +K PL Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 VSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + SY++K    KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA LP
Sbjct: 238 VKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           QE+GTLITALG GIG+D ++I KLRYH+IIIM
Sbjct: 358 QEVGTLITALGCGIGRDEYNIEKLRYHRIIIM 389


>gi|83017293|dbj|BAE53564.1| DNA gyrase B [Microbulbifer sp. MBIC08251]
          Length = 389

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 228/392 (58%), Positives = 294/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS+ LKL I+R+G I+E ++ +G+   PL V G   + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSAELKLTIRRDGRIHEQTYRDGVPQAPLAVVGET-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS + FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y GG+ 
Sbjct: 60  TMVHFKPSPETFSNIEFHFDVLAKRLRELSFLNSGVRILLKDERSGKE--EIYEYGGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+  K P+ +         D I +++A++WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNHAKTPINKVLHFQSQRDDGIGVEVALQWNDSFQENIYCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+EK    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRTALTRGLNNYIEKEGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VE  +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKSAVEQEMGQHFSDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  FD +K+RYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFDADKIRYHSIII 389


>gi|32480603|gb|AAP83867.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480607|gb|AAP83869.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480609|gb|AAP83870.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480611|gb|AAP83871.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 233/394 (59%), Positives = 298/394 (75%), Gaps = 2/394 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL   G
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQLG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            +    GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +Q+SLID+R  E R    
Sbjct: 61  VSA-KRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLQVSLIDER-GEGRRDDF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQK
Sbjct: 119 HYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETIYCFTNNIPQK 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KEKLVSS+V+  VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKG
Sbjct: 239 KEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERA
Sbjct: 299 VLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           RFD+MLSS E+GTLITALGTGIG+D ++ +KLRY
Sbjct: 359 RFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|126035274|gb|ABN72390.1| gyrase B subunit [Enterobacter cloacae]
          Length = 389

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 237/391 (60%), Positives = 303/391 (77%), Gaps = 4/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG   + TGT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTM 60

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 61  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 239 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           QE+ TLITALG GIG+D ++ +KLRYH III
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|261878863|ref|ZP_06005290.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334542|gb|EFA45328.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 667

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 157/564 (27%), Positives = 256/564 (45%), Gaps = 56/564 (9%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
              Q   Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 24  TQPQTPEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDEFKM 83

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
              D I V ++ +   +V D GRGIP            E + + L+ GGK++ K++K S 
Sbjct: 84  NAGDRIEVDIDDNLHVSVRDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFKKSV 135

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALS+  +++  REG + E+ F  G L +    T  + ++ GT V F P 
Sbjct: 136 GLNGVGVKAVNALSAHFEVKSYREGKVRELKFEKGQLMDD--KTSKSQDENGTYVFFEPD 193

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           S +F    F  + ++  LR  ++LNS + I    +R           + G+E  ++    
Sbjct: 194 SSLFKNYAFRDEIVETMLRNYTYLNSGLTIMYNGRRIKS--------RNGLEDLLNDNMT 245

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                    + ++G      I++A    + Y E    F N      GGTH S  +  + R
Sbjct: 246 VDSLY--PIVHVKGDD----IEVAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAR 299

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS---- 354
            I  + +K++            D R G  + ++I + +P F SQTK KL S+ +      
Sbjct: 300 TIKEFFDKNYEYA---------DIRNGIVAAIAINVEEPVFESQTKIKLGSTVMAPDGET 350

Query: 355 ---VVESFVNDGLSAWLEEHPLEAKIIVKKVL----DASMVRDAARRARDLTRRKGVLDI 407
               V  F+   +  +L  H  +   I++  +              +      +K  L  
Sbjct: 351 INKFVGDFLKREVDNYLHIHKEDVTDILENKIKESERERKAMAGVTKLARERAKKASLHN 410

Query: 408 ---ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
                      D      +++ +F+ EGDSA GS  + R    QA+  LRGK LN     
Sbjct: 411 RKLRDCRIHFCDAKNDQKEETSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 470

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
              +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF + 
Sbjct: 471 KKVVYENEEFNLLQAALDIEDG-----LDNLRYNKVIVATDADVDGMHIRLLIITFFLQF 525

Query: 525 MPSLIHNGFLYIIKPPLYGITRGK 548
            P LI  G +++++ PL+ +   +
Sbjct: 526 YPELIKKGHVFVLQTPLFRVRNRR 549


>gi|18147143|dbj|BAB83052.1| DNA gyrase subunit B [Fundibacter jadensis]
          Length = 390

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 300/393 (76%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G+  + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQLYRHGVPAMPLEVVGNT-DSSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS + F+   F+YD L  RLRELSFLNS V+I L+D+R+ E       Y GG+ 
Sbjct: 60  TAIHFRPSPETFTNIKFHYDILAKRLRELSFLNSGVRIHLLDERNGEE--DVFEYDGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFVSYL+++K PL Q          D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 AFVSYLNQNKTPLNQVFHFQFDREEDGIAVEVAMQWNDSYQENLFCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + SY+EK    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRAALTRTLNSYMEKEGLLKKEKANPTGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  + +    +L E+P EA+ I  K++DA+  RDAAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKSAVEQTMGELFQDYLLENPQEARAISSKIIDAARARDAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+GTLITALG GIG+D +++ KLRYH+III
Sbjct: 358 SSQEVGTLITALGCGIGRDEYNVEKLRYHRIII 390


>gi|282879060|ref|ZP_06287820.1| DNA topoisomerase IV subunit B [Prevotella buccalis ATCC 35310]
 gi|281298794|gb|EFA91203.1| DNA topoisomerase IV subunit B [Prevotella buccalis ATCC 35310]
          Length = 670

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 155/558 (27%), Positives = 259/558 (46%), Gaps = 56/558 (10%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADII 64
           SY  D+I+ L  ++ V+ RP MYIG     +    G++ ++ EV+DN+IDE      D I
Sbjct: 29  SYTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLPEDGIYVLLKEVIDNSIDEFKMKSGDRI 88

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + +  +   +V D GRGIP            E + + L+ GGK++ K++K S GL+GVG
Sbjct: 89  EIDVEENLRVSVRDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFKKSVGLNGVG 140

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +  VNALS+  +++  REG +  ++F  G +      T    ++TGT V F P + +F  
Sbjct: 141 LKAVNALSAHFEVKSYREGKVRSITFEKGEIKTD--QTDKTKDETGTYVYFEPDNTLFKN 198

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+ D ++  LR  ++LN+ + I    +R           + G+E  ++         +
Sbjct: 199 YSFHDDIVETMLRNYTYLNAGLTIMYNGRRIKS--------RNGLEDLLNDNMT--TDGL 248

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              + + G      I++A    + Y E    F N      GGTH S  +  + + I  + 
Sbjct: 249 YPIVHVIGDD----IEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAKTIKEFY 304

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-------VVE 357
           +K++            D R G  + ++I + +P F SQTK KL S+ +          V 
Sbjct: 305 DKNYEYT---------DIRNGLVAAVAINVEEPVFESQTKIKLGSTLMAPGGETINKYVG 355

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDAS----MVRDAARRARDLTRRKGVLDIA---SL 410
            F+   +  +L  H  +   +++  + AS           +      +K  L        
Sbjct: 356 DFIKREVDNYLHIHKEDCADVLETKIKASEHERKAMAGVTKLARERAKKANLHNKKLRDC 415

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
               +D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN        +  
Sbjct: 416 RIHFSDEKNDRKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKKVVYE 475

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  P LI 
Sbjct: 476 NEEFNLLQAALDIEDG-----LDTLRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIK 530

Query: 531 NGFLYIIKPPLYGITRGK 548
            G +Y+++ PL+ +   +
Sbjct: 531 KGHVYVLQTPLFRVRNRR 548


>gi|313574651|emb|CBX26178.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 274/392 (69%), Positives = 330/392 (84%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKVHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQEELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  P+ I+G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPVAIKGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|302746262|gb|ADL62721.1| GyrB [Morganella morganii subsp. morganii]
          Length = 388

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 235/391 (60%), Positives = 298/391 (76%), Gaps = 4/391 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G   + L V G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTGTRV 59

Query: 174 TFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS D F    +F YD L  RLRELSFLNS V I LIDKR  +       Y+GGI+AF
Sbjct: 60  RFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL R K  +  +       +D+I ++++M+WND + ENV CFTNNIPQ+DGG HL+G 
Sbjct: 118 VEYLSRAKTSIHNNVFYFSTEKDDIGVEISMQWNDSFQENVYCFTNNIPQRDGGAHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + SY+EK   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE+ +N+ LS +L+E+P + KIIV K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 238 KTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQ
Sbjct: 298 KLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           E+ TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYHSIIIM 388


>gi|313574629|emb|CBX26167.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 274/392 (69%), Positives = 331/392 (84%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S + F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPETFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  P+ I+G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPVAIKGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|126035310|gb|ABN72408.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|126035316|gb|ABN72411.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 385

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 233/388 (60%), Positives = 299/388 (77%), Gaps = 4/388 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 238 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           E+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYHSI 385


>gi|35210343|dbj|BAC92683.1| gyrase B subunit [Alicyclobacillus cycloheptanicus]
          Length = 389

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 206/393 (52%), Positives = 280/393 (71%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+WLK+ + R+GNIY   +  G+    L + G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTWLKVEVHRDGNIYVQEYERGVPKYDLKIVGKTDH-TG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T VTFLP  +IF+    F  D LQ RLREL+FLN+ ++I   D+R  +    T  Y GG+
Sbjct: 60  TSVTFLPDPEIFTETTEFQSDILQGRLRELAFLNAGLEIIYEDEREDKT--YTYLYSGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFV YL+++K  L  +P+ + G +D +++++A+++NDGY   +L F NNI   +GGTH 
Sbjct: 118 AAFVEYLNKNKDLLHPNPVYVTGKKDEVTVEVALQYNDGYATTLLSFANNINTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K+++ ++ G+D REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 178 SGFKSALTRVINDYGRKTNIIKENENNLSGEDVREGLTAVVSVKVPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE    + L  + EE+P  AK IV+K L A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 238 SEVRGIVEGLFGEKLQTFFEENPSVAKRIVEKSLTAARAREAARKARELTRRKNALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAK GR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLADCSTKDASISELYIVEGDSAGGSAKGGRDRNFQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++E+  +ITA+GTGIG D FDI+K RYHKI+I
Sbjct: 358 SNEEVRAIITAIGTGIG-DDFDISKARYHKIVI 389


>gi|66474499|gb|AAY46819.1| GyrB [Aeromonas caviae]
          Length = 385

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 230/388 (59%), Positives = 295/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + +Y++K   SKK K +  GD  REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDHVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|35210339|dbj|BAC92681.1| gyrase B subunit [Alicyclobacillus acidoterrestris]
 gi|300068753|dbj|BAJ10558.1| DNA gyrase subunit B [Alicyclobacillus acidoterrestris]
          Length = 390

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 202/393 (51%), Positives = 279/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALSSWLK+ + R+G++Y   +  G+    L V G   +  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSSWLKVEVWRDGHVYVQEYERGVPKYDLKVVGDT-DKHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T VTFLP  +IF+    F  +TLQHRLREL+FLN+ + I L D+R     +    Y+GG+
Sbjct: 60  TSVTFLPDPEIFTETTVFQIETLQHRLRELAFLNAGLAIVLEDQREGGKTQE-FHYEGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + FVSYL++ K  L   P+ ++G +D+++I++A+++NDGY   +  F NNI   +GGTH 
Sbjct: 119 KEFVSYLNKSKDVLHPDPVFVEGVKDDVTIEVALQYNDGYASTIYSFANNINTGEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K  + ++ GDD REG  +V+S+K+P+P+F  QTK KL +
Sbjct: 179 SGFKSALTRVINDYGRKNNLIKGSESNLTGDDVREGIVAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES   D L  +L+E+P  A+ I+ K + A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 239 SEVRGIVESLFGDKLQTFLDENPSVARKIIDKCVTAARAREAARKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DC  +DP++SE++LVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 299 LPGKLTDCVSKDPERSEIYLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++EI  +ITA GTGIG D FD++K RYHK++I
Sbjct: 359 SNEEIRAIITAAGTGIG-DEFDLSKARYHKVVI 390


>gi|41387074|gb|AAS01491.1| GyrB [Bacillus sp. ES-027]
 gi|41387080|gb|AAS01494.1| GyrB [Bacillus sp. SAFN-003]
          Length = 393

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 192/395 (48%), Positives = 277/395 (70%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           S+ E+ T+ITA+GT IG D FDI K RYHK+IIMT
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMT 392


>gi|531257|dbj|BAA07144.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 389

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 225/392 (57%), Positives = 299/392 (76%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  THIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G RS+LTR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+
Sbjct: 298 LPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMI 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SSQE+GTLITALG GIG++ ++I+KLRYH II
Sbjct: 358 SSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|66474501|gb|AAY46820.1| GyrB [Aeromonas enteropelogenes]
 gi|66474519|gb|AAY46829.1| GyrB [Aeromonas hydrophila]
          Length = 385

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 232/388 (59%), Positives = 296/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + SY++K   SKK K +  GD+ REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDNVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|332300679|ref|YP_004442600.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332177742|gb|AEE13432.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 673

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 163/624 (26%), Positives = 268/624 (42%), Gaps = 68/624 (10%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
           D    + Y  D  + L   + ++KRP MYIG     +    G++ +I EV+DN+IDE + 
Sbjct: 14  DQATVAGYTEDDFRTLSWSEHIRKRPGMYIGKIGDGTQADDGIYILIKEVIDNSIDEFVM 73

Query: 59  GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           G    I +T++ +     + D GRGIP     +          ++++ G K + +++K S
Sbjct: 74  GVGSEIRITIDSETNEVQIRDYGRGIPLGKLVDAT--------SKMNTGAKIDSQAFKKS 125

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGSAGNDTGTEVTFL 176
            GL+GVG+  VNALSS   ++  REG    +++    +               GT V+F 
Sbjct: 126 VGLNGVGLKAVNALSSTFTVQSWREGETSSVTYERAEMVAHTPAAPCEDKGVHGTLVSFT 185

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P +++F    ++   ++  +R   +LN+ + + L DK+           + G++ F+S  
Sbjct: 186 PDAEVFRNSHYDLRHVEALVRNYCYLNTGLTLYLNDKK--------YVSRHGLQDFLSDT 237

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                     P+          I++A+   + Y E    F N      GGTHL+  R  +
Sbjct: 238 ITG------DPLYPIIRLTGPDIEVAITHIEQYGEEFYSFVNGQYTTQGGTHLTAFREQV 291

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV- 355
            R I  +  K F            D R G  + +SI++ +P F SQTK KL S E+    
Sbjct: 292 ARVIKEFSGKGFEYG---------DIRSGMAAAISIRIIEPEFESQTKIKLGSKEMVPQD 342

Query: 356 ------------VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--- 400
                       V+ FV D L   L+ +      I + +L      +  R+A        
Sbjct: 343 PMFEHEPLRGVTVQKFVGDFLKEKLDNYLHMHPDISEVMLQTIQANERERKAMSGVTKLA 402

Query: 401 ----RKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
               +K  L             D   ++P+ + +F+ EG+SA GS  Q R    QA+  L
Sbjct: 403 RERAKKASLHNKKLRDCTEHYNDPKAKNPELTSIFITEGNSASGSITQSRDARYQAVFSL 462

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK LN        +  ++E   L  AL    G     +  LRY+++II TDAD DG HI
Sbjct: 463 RGKPLNSYGLSKKVVYENEEFNLLQAALNIEDG-----LEGLRYNRVIIATDADDDGMHI 517

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSE 570
           R L LTFF +  P L+  G +YI++ PLY ++   + K     +   + +     ++ SE
Sbjct: 518 RLLTLTFFLQFFPELVRRGHVYILETPLYRVSLPAKRKKSITARVASAGKKKGGKKATSE 577

Query: 571 EIELFCDSKGVISKNDLRNFIDDA 594
                  S    S  +L   ++  
Sbjct: 578 PASETETSAYCYSDQELNAAVERM 601


>gi|313885866|ref|ZP_07819607.1| DNA topoisomerase IV subunit B [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924695|gb|EFR35463.1| DNA topoisomerase IV subunit B [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 673

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 163/624 (26%), Positives = 268/624 (42%), Gaps = 68/624 (10%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLE 58
           D    + Y  D  + L   + ++KRP MYIG     +    G++ +I EV+DN+IDE + 
Sbjct: 14  DQATVAGYTEDDFRTLSWSEHIRKRPGMYIGKIGDGTQADDGIYILIKEVIDNSIDEFVM 73

Query: 59  GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           G    I +T++ +     + D GRGIP     +          ++++ G K + +++K S
Sbjct: 74  GVGSEIRITIDSETNEVQIRDYGRGIPLGKLVDAT--------SKMNTGAKIDSQAFKKS 125

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGSAGNDTGTEVTFL 176
            GL+GVG+  VNALSS   ++  REG    +++    +               GT V+F 
Sbjct: 126 VGLNGVGLKAVNALSSTFTVQSWREGETSSVTYERAEMVAHTPAAPCEDKEVHGTLVSFT 185

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P +++F    ++   ++  +R   +LN+ + + L DK+           + G++ F+S  
Sbjct: 186 PDAEVFRNSHYDLRHVEALVRNYCYLNTGLTLYLNDKK--------YVSRHGLQDFLSDT 237

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                     P+          I++A+   + Y E    F N      GGTHL+  R  +
Sbjct: 238 ITG------DPLYPIIRLTGPDIEVAITHIEQYGEEFYSFVNGQYTTQGGTHLTAFREQV 291

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV- 355
            R I  +  K F            D R G  + +SI++ +P F SQTK KL S E+    
Sbjct: 292 ARVIKEFSGKGFEYG---------DIRSGMAAAISIRIIEPEFESQTKIKLGSKEMVPQD 342

Query: 356 ------------VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--- 400
                       V+ FV D L   L+ +      I + +L      +  R+A        
Sbjct: 343 PMFEHEPLRGVTVQKFVGDFLKEKLDNYLHMHPDISEVMLQTIQANERERKAMSGVTKLA 402

Query: 401 ----RKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
               +K  L             D   ++P+ + +F+ EG+SA GS  Q R    QA+  L
Sbjct: 403 RERAKKASLHNKKLRDCTEHYNDPKAKNPELTSIFITEGNSASGSITQSRDARYQAVFSL 462

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK LN        +  ++E   L  AL    G     +  LRY+++II TDAD DG HI
Sbjct: 463 RGKPLNSYGLSKKVVYENEEFNLLQAALNIEDG-----LEGLRYNRVIIATDADDDGMHI 517

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSE 570
           R L LTFF +  P L+  G +YI++ PLY ++   + K     +   + +     ++ SE
Sbjct: 518 RLLTLTFFLQFFPELVRRGHVYILETPLYRVSLPAKRKKSITARVASAGKKKGGKKATSE 577

Query: 571 EIELFCDSKGVISKNDLRNFIDDA 594
                  S    S  +L   ++  
Sbjct: 578 PASETETSAYCYSDQELNAAVERM 601


>gi|41387076|gb|AAS01492.1| GyrB [Bacillus sp. FO-011]
          Length = 392

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 194/395 (49%), Positives = 278/395 (70%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           S+ E+ T+ITA+GT IG D FDI K RYHK+IIMT
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHKVIIMT 392


>gi|23978217|dbj|BAC21107.1| DNA gyrase B subunit [Calothrix brevissima]
          Length = 398

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 187/397 (47%), Positives = 267/397 (67%), Gaps = 9/397 (2%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   + V LN DGS TV+D+GRGIPTD+H + G SA 
Sbjct: 2   GPKGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTDIHPKTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVG+SVVNALS ++++ + R+  ++   +  GI  
Sbjct: 62  ETVLTILHAGGKFGGGGYKVSGGLHGVGISVVNALSEFVEVTVWRDKKVHLQRYERGIPV 121

Query: 157 NPLVVT--GSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           + L V         TGT VTFLP + IF+   +F+Y TL  RLREL++LN+ V+I+  D 
Sbjct: 122 SDLQVKPNKEKEARTGTSVTFLPDTQIFTTGTEFDYITLAGRLRELAYLNAGVKITFTDN 181

Query: 214 R-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-D 267
           R     S  P+  T  Y+GGI+ +++Y++R K+PL +  I +QG R N+ +++A++W  D
Sbjct: 182 RLELLKSDTPKIETYEYRGGIKEYIAYMNREKQPLHEEIIYVQGERSNVQVEVALQWCTD 241

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y +NVL F NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G+  REG T
Sbjct: 242 AYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNLSGEHVREGLT 301

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE HP  A  ++ K + A  
Sbjct: 302 AIISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPSVADAVLDKAIQAFK 361

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +AAR AR+L RRK VL+ + LPGKLADCS RDP +
Sbjct: 362 AAEAARHARELVRRKSVLESSPLPGKLADCSTRDPSE 398


>gi|313574595|emb|CBX26150.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574597|emb|CBX26151.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 274/392 (69%), Positives = 330/392 (84%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S + F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPETFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  P+ I G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY + S   K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSEAKILVGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|66474529|gb|AAY46834.1| GyrB [Aeromonas sp. AN-30]
          Length = 385

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 230/388 (59%), Positives = 296/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIRVEVAMQWNDSYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH+ G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THVVGFRTALTRTLNNYMDKEDSSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|84310500|gb|ABC55398.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|84310512|gb|ABC55404.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|84310514|gb|ABC55405.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|84310518|gb|ABC55407.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|84310520|gb|ABC55408.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|84310524|gb|ABC55410.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 193/392 (49%), Positives = 276/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L + G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVV 390


>gi|23978237|dbj|BAC21113.1| DNA gyrase B subunit [Synechococcus leopoliensis]
 gi|31071469|dbj|BAC76783.1| DNA gyrase B subunit [Synechococcus sp. PCC 7942]
          Length = 396

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 183/393 (46%), Positives = 262/393 (66%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DNA+DE+L GY + I V L  DGSC V+DNGRGIPTD+H + G SA 
Sbjct: 2   GPKGLHHLVYEVVDNAVDEALAGYCNTIDVRLLEDGSCQVTDNGRGIPTDIHPQTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVGVSVVNALS ++++ + REG  ++  F  G   
Sbjct: 62  ETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNALSEYVEVTVWREGKTHQQRFEQGNPI 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L V   A +  GT+V F P + IF    +F+Y TL  RL+EL++LN+ V+I   D+R 
Sbjct: 122 GELQVAPDADDRRGTQVRFKPDATIFSETTEFDYGTLASRLKELAYLNAGVRIDFTDERL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               + EP + T +++GGI  +V+Y++  K+ L    I +Q  +D + ++ A++W  D Y
Sbjct: 182 QLTKNHEPHQETYYFEGGIREYVAYMNTDKQALHSEIIFVQSEKDGVQVEAALQWCVDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +N+L F NNI   DGGTH+ GL++ LTR + +   K    K    ++ G++ REG T++
Sbjct: 242 SDNILGFANNIRTIDGGTHIEGLKTVLTRTMNTIARKRNKRKDADNNLSGENIREGLTAI 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V++ V + L+ +LE HP  A +I++K + A    
Sbjct: 302 VSVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGETLTEYLEFHPSVADLILEKAIQAFNAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AARRAR+L RRK VL+ ++LPGKLADCS RDP
Sbjct: 362 EAARRARELVRRKSVLESSTLPGKLADCSSRDP 394


>gi|31071481|dbj|BAC76789.1| DNA gyrase B subunit [Hapalosiphon sp. IAM M-264]
          Length = 396

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 187/393 (47%), Positives = 258/393 (65%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   + V LN DGS TV+D+GRGIPT +  + G S  
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTGIVAKTGKSGL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVGVSVVNALS W+++ + R+  ++   +  GI  
Sbjct: 62  ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRDQKVHTQRYERGIPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L       N TGT VTF P S IF+   +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELNAKPYKDNRTGTSVTFQPDSQIFTTGTEFDYTTLASRLRELAYLNAGVKITFTDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S +P+  T  YKGGI  +++Y++  K+PL +  I +QG R+N+ +++A++W  D Y
Sbjct: 182 QLLKSDQPKVETYEYKGGIREYITYINADKQPLHEEVIYVQGERNNVQVEVALQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K  + ++ G+  REG T +
Sbjct: 242 TDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKDSEPNLSGEHVREGLTGL 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE HP  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGETLTEYLEFHPSVADAILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|325268376|ref|ZP_08135008.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
           multiformis DSM 16608]
 gi|324989230|gb|EGC21181.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
           multiformis DSM 16608]
          Length = 653

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 151/565 (26%), Positives = 258/565 (45%), Gaps = 57/565 (10%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESL 57
           + +     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE  
Sbjct: 9   TPDASPVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDEFK 68

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
               D I + +  +   +V D GRGIP            E + + L+ GGK++ K++K S
Sbjct: 69  MNAGDRIEIDVEDNLRVSVRDYGRGIPQGK-------LVEAV-SVLNTGGKYDSKAFKKS 120

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+GVGV  VNALSS  +++  R+G + E++F  G + N    T  + +++GT + F P
Sbjct: 121 VGLNGVGVKAVNALSSHFEVKSYRDGRVRELTFGKGNIQND--RTAKSSDESGTYIYFEP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + +F    F+ D ++  LR  ++LN+ + I    +R             G++  ++   
Sbjct: 179 DNTLFKNYSFHDDIVEEMLRNYTYLNTGLTIMYNGRRILSRH--------GLKDLLTDNM 230

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
                 +   + ++G      I++A    + Y E    F N      GGTH +  +  + 
Sbjct: 231 TV--DPLYPIVHMKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAFKEHIA 284

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS--- 354
           R I  +  K              D R G  + +++ + +P F SQTK KL S+++     
Sbjct: 285 RTIKEFFGKYEY----------GDIRNGLVAAIAVNVEEPVFESQTKIKLGSTQMAPDGE 334

Query: 355 --------VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
                    +++ V++ L    E+     +  +K+            +      +K  L 
Sbjct: 335 SINKYVGDFIKTNVDNYLHIHKEDFTDILENKIKETERERKAMAGVTKLARERAKKANLH 394

Query: 407 I---ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                       D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN    
Sbjct: 395 NRKLRDCRVHYCDVKNNRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGL 454

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +
Sbjct: 455 TKKVVYENEEFNLLQAALDIEDG-----LDSLRYNKVIVATDADVDGMHIRLLIITFFLQ 509

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGK 548
             P LI  G +Y+++ PL+ +   +
Sbjct: 510 FFPELIKKGHVYVLQTPLFRVRNRR 534


>gi|306517909|emb|CBL53378.1| gyrase B subuni [Photobacterium sp. CECT 7614]
          Length = 384

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 226/386 (58%), Positives = 298/386 (77%), Gaps = 3/386 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L I R G+I++  + +G    PL V G   + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHQQIYHHGEPQAPLAVIGDT-DRTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F PS+D F+  +F+Y+ L  RLRELSFLNS V I LID+R  E +     Y+GGI+A
Sbjct: 60  RIRFWPSADTFTNIEFHYEILAKRLRELSFLNSGVSIKLIDER-EEGKMDHFMYEGGIQA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+R+K P+ Q        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 FVQHLNRNKTPIHQKVFHFNLEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRGALTRTLNNFMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VES + + LS +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A L
Sbjct: 239 EVKPAVESTMGEKLSEFLLENPSDAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 299 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLR 496
           SQE+ TLITA+G GIG+D ++ +KLR
Sbjct: 359 SQEVATLITAMGCGIGRDEYNPDKLR 384


>gi|19909615|dbj|BAB87003.1| DNA gyrase subunit B [Marinomonas vaga]
          Length = 392

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 226/395 (57%), Positives = 295/395 (74%), Gaps = 6/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I++ G +YE  + +G+   PL V G + +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSETVTLTIRKNGKVYEQHYAHGVPQAPLAVIGES-DGKG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   F YD L  RLRELSFLNS V I L D+R+ +       Y+GG++
Sbjct: 60  TTVHFKPSAETFSNILFVYDILAKRLRELSFLNSGVAIHLKDERTGKE--EFFNYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIRI---QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           +FV +L+ +K+P+      I   +   D I++++A++WN+G+ EN+ C+TNNIPQ+DGGT
Sbjct: 118 SFVEHLNTNKQPINDIFHFICQREDLEDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R ALTR + +++E    +KK K +  GDDCREG T+++S+K+PDP+FSSQTK+KL
Sbjct: 178 HLAGFRGALTRTLNNFIEAEGLAKKQKVATTGDDCREGLTAIVSVKVPDPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV++ VE  ++   + +L E P EAK IV K+LDA+  R+AARRARD+TRRKG LDI
Sbjct: 238 VSSEVKTAVEQEMSKRFAEFLLEKPNEAKTIVNKMLDAARAREAARRARDMTRRKGALDI 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDK
Sbjct: 298 AGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDK 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           MLSS E+GTLITALG GIG+D F+ +KLRYH I+I
Sbjct: 358 MLSSAEVGTLITALGCGIGRDEFNADKLRYHSIVI 392


>gi|145309491|dbj|BAF56643.1| DNA gyrase subunit B [Alicyclobacillus kakegawensis]
          Length = 389

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 193/393 (49%), Positives = 271/393 (68%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS WL++ + R+G ++   +  G+    L V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSEWLRVEVHRDGKVHVQEYERGVPLYDLKVVG-TTDHTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V+F P  +IF+    F  D LQ RLREL+FLN+ ++I   D+   + R       GG+
Sbjct: 60  TIVSFRPDPEIFTETTEFQSDILQGRLRELAFLNAGLEIVYNDECEGKSRTYCY--SGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L + P+ ++G R ++S+++A+++NDGY   +  F NNI   +GG+H 
Sbjct: 118 SEFVRFLNKSKDVLHEDPVFVKGVRQDVSVEIALQYNDGYAAVLYSFANNIHTHEGGSHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ALTR I  Y  K    K ++ ++ GDD REG T+++S+K+PDP+F  QTK KL +
Sbjct: 178 AGFKAALTRVINDYARKMNLLKDNESNLTGDDVREGLTAIVSVKVPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +V+   +D   A+LE++P  A+ IV K + A+  R+AAR+AR++TRRK  L+++S
Sbjct: 238 SEVRGIVDGLFSDKFYAFLEQNPSVARRIVDKSITAARAREAARKAREVTRRKSALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D    EL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLADCSSKDASVCELYIVEGDSAGGSAKQGRDRNFQAILPLRGKIINVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI ++ITA+GTGIG D FDI K RYHKI+I
Sbjct: 358 SNAEIRSIITAIGTGIG-DEFDIAKARYHKIVI 389


>gi|313574559|emb|CBX26132.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574561|emb|CBX26133.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574563|emb|CBX26134.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574565|emb|CBX26135.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574567|emb|CBX26136.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574569|emb|CBX26137.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574571|emb|CBX26138.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574573|emb|CBX26139.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574575|emb|CBX26140.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574577|emb|CBX26141.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574579|emb|CBX26142.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574581|emb|CBX26143.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574583|emb|CBX26144.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574585|emb|CBX26145.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 274/392 (69%), Positives = 330/392 (84%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S D F++ D+++ TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPDTFTMTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIKQEELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  P+ I G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY E S   K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP +AKI+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|3985960|dbj|BAA34865.1| DNA gyrase subunit B protein [Nitrosomonas europaea]
          Length = 389

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 235/392 (59%), Positives = 293/392 (74%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS WL+L I+R GN+Y+M F  G+   PL VTG      G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLRLTIRRNGNVYQMEFREGVAVAPLKVTGQTE-KHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV FL S  +F    ++YD    RLRELSFLN  ++I L D+R  + RE    + GGI 
Sbjct: 60  TEVHFLASQSVFGDITYHYDIFAKRLRELSFLNHGIKIRLADQR--DDREEVFAFTGGIR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++R K  L  S    +G +DNI++++AM+WND Y E VLCFTNNIPQKDGGTHL+
Sbjct: 118 NFVEYINRSKTVLHPSIFYAKGLKDNITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLT 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR + +Y+EK+  +KK K    GDD REG T VLS+K+ +P+FSSQTKEKLVSS
Sbjct: 178 GLRAAMTRTLNNYIEKNELAKKAKVDTTGDDMREGITCVLSVKLFEPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV   VE  V   LS +L E+P EAK I  K+++A+  R+AAR+AR+L RRKGVLD   L
Sbjct: 238 EVHPAVEEIVVQKLSDFLLENPNEAKTICNKIIEAARAREAARKARELIRRKGVLDSMGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DPK  EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++S
Sbjct: 298 PGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEI +LITALGTGIG+D ++ +KLRYH+III
Sbjct: 358 SQEIVSLITALGTGIGKDEYNPDKLRYHRIII 389


>gi|126035230|gb|ABN72368.1| gyrase B subunit [Escherichia coli]
          Length = 386

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 234/389 (60%), Positives = 299/389 (76%), Gaps = 4/389 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 238 KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKII 501
           E+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYHNII 386


>gi|313574599|emb|CBX26152.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574601|emb|CBX26153.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574605|emb|CBX26155.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574607|emb|CBX26156.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574631|emb|CBX26168.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574633|emb|CBX26169.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574635|emb|CBX26170.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574655|emb|CBX26180.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 274/392 (69%), Positives = 330/392 (84%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  P+ I+G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPVAIKGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|313574653|emb|CBX26179.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 274/392 (69%), Positives = 330/392 (84%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQEELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  P+ I+G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPVAIKGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|84310490|gb|ABC55393.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii]
          Length = 390

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 193/392 (49%), Positives = 276/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+  + L + G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEIIGETDH-TG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF+    ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFTETTVYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  L  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSAALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALG GIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGPGIGED-FNLEKARYHKVV 390


>gi|33590326|gb|AAQ22703.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 387

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 228/388 (58%), Positives = 298/388 (76%), Gaps = 4/388 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL + G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGETE-QTGTRV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS D F +   F +D L  RLRELSFLNS V I LIDKR+         YKGGI+AF
Sbjct: 60  RFWPSMDTFRNNTKFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYKGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L++++ P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEFLNKNQTPIYPNVFYFLTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 238 KTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           E+ TLITALG GIG+D+++ +KLRYH I
Sbjct: 358 EVATLITALGCGIGRDAYNPDKLRYHSI 385


>gi|33590322|gb|AAQ22701.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. hainanensis]
          Length = 383

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 225/386 (58%), Positives = 295/386 (76%), Gaps = 4/386 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GG
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINK 494
           LSSQE+ TLITALG GIG+D ++ +K
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDK 383


>gi|32480599|gb|AAP83865.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480601|gb|AAP83866.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 233/394 (59%), Positives = 298/394 (75%), Gaps = 2/394 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL   G
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQLG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            +    GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +Q+SLID+R  E R    
Sbjct: 61  VSA-KRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLQVSLIDER-GEGRRDDF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQK
Sbjct: 119 HYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQK 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KEKLVSS+V+  VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKG
Sbjct: 239 KEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERA
Sbjct: 299 VLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           RFD+MLSS E+GTLITALGTGIG+D ++ +KLRY
Sbjct: 359 RFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|83017259|dbj|BAE53549.1| DNA gyrase B [Microbulbifer sp. MBIC08244]
 gi|83017264|dbj|BAE53551.1| DNA gyrase B [Microbulbifer sp. MBIC04024]
 gi|142000945|dbj|BAF56096.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000949|dbj|BAF56097.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000951|dbj|BAF56098.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000953|dbj|BAF56099.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000960|dbj|BAF56101.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000967|dbj|BAF56102.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000969|dbj|BAF56103.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000971|dbj|BAF56104.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000975|dbj|BAF56105.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000977|dbj|BAF56106.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000979|dbj|BAF56107.1| DNA gyrase B [Microbulbifer variabilis]
          Length = 389

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 226/392 (57%), Positives = 296/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E ++ +G+   PL V G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLIIRRGGKIHEQTYHHGVPQAPLEVVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSEDTFSNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EVYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQSQREDGIAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|32480583|gb|AAP83857.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 231/394 (58%), Positives = 295/394 (74%), Gaps = 2/394 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL- 59

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                 GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R    
Sbjct: 60  EVSAKRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI +FV +L + K PL  + I + G  + I +D A++W D Y E + CFTNNIPQK
Sbjct: 119 HYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGIVVDAALQWTDAYQETMYCFTNNIPQK 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KEKLVSS+V+  VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKG
Sbjct: 239 KEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERA
Sbjct: 299 VLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           RFD+MLSS E+GTLITALGTGIG+D ++ +KLRY
Sbjct: 359 RFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|33590338|gb|AAQ22709.1| DNA gyrase subunit B [Photorhabdus luminescens]
          Length = 384

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 228/387 (58%), Positives = 296/387 (76%), Gaps = 4/387 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTG 59

Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS D F    +F +D L  RLRELSFLNS V I LIDKR+    E    Y+GGI
Sbjct: 60  TRVRFWPSMDTFRDNTEFQHDILAKRLRELSFLNSGVSIRLIDKRT--NIEDHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLR 496
           SSQE+ TLITALG GIG+D ++ +KLR
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLR 384


>gi|2196824|gb|AAB80829.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 228/409 (55%), Positives = 303/409 (74%), Gaps = 4/409 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L   GKF + S +VSGG HGVGVSVVNALS  L+L I+R+G +YE  + +G   
Sbjct: 1   EVIMTVLRPLGKFEEPSKQVSGGWHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A  +TGTE+ F PS + F+  +F+Y+ L  R+RELSFLNS V I LID+R  
Sbjct: 61  EPIKEIGEAT-NTGTEIRFWPSQETFTDTEFHYELLAKRIRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI+AFV YL+R+K P+ +        RD+ I++++AM+WNDG+ E++ C
Sbjct: 120 K--YEFFHYEGGIKAFVEYLNRNKTPVNKDVFHFSQERDDGITVEVAMQWNDGFQESIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR A
Sbjct: 238 DPKFSSQTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAAREA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           KILNVE+ARFDKML S E+ T ITALG GIG D F   + R  + I+MT
Sbjct: 358 KILNVEKARFDKMLFSLEVATFITALGCGIGLDVFYPVQTRGREFIVMT 406


>gi|83017282|dbj|BAE53559.1| DNA gyrase B [Microbulbifer sp. MBIC08249]
          Length = 389

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 221/392 (56%), Positives = 297/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E ++ +G+   PL + G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSRELKLTIRRAGKIHEQTYHHGVPQAPLEIVGES-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ F+  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSAETFNNIEFHFDILAKRLRELSFLNSGVRIVLKDERSGKE--EVYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV++L+++K  + +         D  ++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVAFLNQNKTAINKVLHFQSQREDGTAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGQHFADYLLENPQEAKSVVIKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|66474533|gb|AAY46836.1| GyrB [Aeromonas enteropelogenes]
          Length = 385

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 231/388 (59%), Positives = 296/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + SY++K   S+K K +  GD+ REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNSYMDKEDYSRKAKSAASGDNLREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|33469255|gb|AAQ19676.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. kayaii]
          Length = 384

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 227/387 (58%), Positives = 297/387 (76%), Gaps = 4/387 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+    E    Y+GG
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRT--NIEDHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKL 495
           LSSQE+ TLITALG GIG+D ++ +KL
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDKL 384


>gi|313574623|emb|CBX26164.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 274/392 (69%), Positives = 330/392 (84%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  P+ I+G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPVAIRGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|198042704|gb|ACH81177.1| GyrB [Pseudoalteromonas sp. UST981101-030]
          Length = 378

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 230/381 (60%), Positives = 291/381 (76%), Gaps = 5/381 (1%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           VIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG I+E  +  G    
Sbjct: 1   VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKIHEQIYNMGEPAA 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           PL V G +    GTE+ F PSS+ FS  +F+YD L  RLRELSFLNS V I L D+R  +
Sbjct: 61  PLAVVGESE-TNGTEIRFWPSSETFSDVNFHYDILAKRLRELSFLNSGVSIILADERDEK 119

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLC 275
                  Y+GGI+AFV +L+ +K P+ Q+          D IS+++AM+WNDG+ E + C
Sbjct: 120 K--DHFKYEGGIQAFVEFLNTNKTPVNQNVFHFTSTREEDGISVEVAMQWNDGFQEGIYC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G RSALTR + +Y+EK   +KK+K S  GDD REG T+V+ +K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRSALTRTLNTYMEKEGFNKKEKSSASGDDAREGLTAVICVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+S VE  + + LS +L E+P +AKI+V K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEYLLENPQDAKIVVTKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG +D+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGAMDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGT 476
           KILNVE+ARFDKMLSSQE+ T
Sbjct: 358 KILNVEKARFDKMLSSQEVAT 378


>gi|126035290|gb|ABN72398.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|126035292|gb|ABN72399.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 385

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 234/388 (60%), Positives = 299/388 (77%), Gaps = 4/388 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I I++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 238 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           E+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYHSI 385


>gi|19909639|dbj|BAB87015.1| DNA gyrase subunit B [Rhodobacter sphaeroides]
          Length = 398

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 248/398 (62%), Positives = 301/398 (75%), Gaps = 6/398 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WL+LRI R G  +   F NG     L V   A  + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGREHFARFENGETVEHLRVVRDAPGEKG 60

Query: 171 TEVTFLPSSDI------FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           TEV FL S+        FS  D+++ TL+ RLREL+FLNS V+I L D+R  EP    +F
Sbjct: 61  TEVRFLASAKTNRPDGTFSNLDYSFKTLEARLRELAFLNSGVRILLEDERPAEPLHSELF 120

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GG+  FV YLDR K P+M  PI I G R  I +++AM WND YHE VL FTNNIPQ+D
Sbjct: 121 YEGGVREFVRYLDRSKSPVMPEPIFITGERGGIGVEVAMWWNDSYHETVLPFTNNIPQRD 180

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R ALTR IT Y + S  ++++K    GDD REG T VLS+K+PDP+FSSQTK
Sbjct: 181 GGTHLAGFRGALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQTK 240

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEVR  VE+ VN+ L+ W EE+P  AK IV K+++A++ R+AAR+AR++TRRK  
Sbjct: 241 DKLVSSEVRPAVENLVNEKLAEWFEENPAIAKSIVGKIVEAALAREAARKAREMTRRKTA 300

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +D+ASLPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERAR
Sbjct: 301 MDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGKILNVERAR 360

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           FD+MLSS+ +GTLITALG GIG+D FDI KLRYHKIII
Sbjct: 361 FDRMLSSETVGTLITALGAGIGRDEFDIAKLRYHKIII 398


>gi|19909549|dbj|BAB86970.1| DNA gyrase subunit B [Mycoplana dimorpha]
          Length = 390

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 282/390 (72%), Positives = 331/390 (84%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L+I+R G+I+EMSF +G+ D PL +TG  G++TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSVMLRLKIRRSGHIHEMSFTHGVADGPLRITGDCGDETGT 60

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EVTFLPS + FS  +FNY TL+HRLREL+FLNS V+I L D+R  + R+  M Y GG+EA
Sbjct: 61  EVTFLPSPETFSNIEFNYQTLEHRLRELAFLNSGVRILLTDRRHSDVRQDEMMYDGGLEA 120

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +LDR KKPL+  PI I+G RD I++++AM WND YHENVLCFTNNIPQ+DGGTHL+G
Sbjct: 121 FVHFLDRAKKPLVPKPIAIRGERDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHLAG 180

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTRQ+ SY E S   KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSE
Sbjct: 181 FRGALTRQVVSYGESSGILKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSE 240

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR VVES VN+ LS WLEEHP EAK++V KV++A+  R+AAR+AR+LTRRKG LDI+SLP
Sbjct: 241 VRPVVESLVNEALSNWLEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALDISSLP 300

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS
Sbjct: 301 GKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 360

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QEIGTLITALGT IG+D F+  KLRYHKII
Sbjct: 361 QEIGTLITALGTSIGKDEFNPEKLRYHKII 390


>gi|126035240|gb|ABN72373.1| gyrase B subunit [Enterobacter cloacae]
          Length = 387

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 236/390 (60%), Positives = 302/390 (77%), Gaps = 4/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG     TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTE-KTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L+E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLSDYLQENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|83017288|dbj|BAE53562.1| DNA gyrase B [Microbulbifer sp. MBIC08253]
          Length = 389

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 226/392 (57%), Positives = 294/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS+ LK+ I+R+G I+E ++ +G+   PL V G   + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSAELKMTIRRDGRIHEQTYRDGVPQAPLAVVGET-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y GG+ 
Sbjct: 60  TTVHFKPSPDTFSNIEFHFDVLAKRLRELSFLNSGVRILLKDERSGKE--EIYEYGGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+  K P+ +         D I +++A++WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNHAKTPINKVLHFQSQRDDGIGVEVALQWNDSFQENIYCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+EK    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNNYIEKEGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGQHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  FD +K+RYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFDADKIRYHSIII 389


>gi|19909641|dbj|BAB87016.1| DNA gyrase subunit B [Rhodovulum strictum]
          Length = 386

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 253/386 (65%), Positives = 302/386 (78%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS WL+LRI R+G  +   F  G     L V G AG   GTEV 
Sbjct: 1   KVSGGLHGVGVSVVNALSDWLELRIWRDGKEHFARFERGDTVEHLRVVGEAGGRKGTEVR 60

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL S D FS  D+ + TL++RLREL+FLNS V+I L D+R  EP    +FY+GG+  FV 
Sbjct: 61  FLASLDTFSNLDYVFKTLENRLRELAFLNSGVRIVLEDERPAEPLRTELFYEGGVREFVR 120

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLDRHK P+M  PI + G RD I +++AM WND YHE VL FTNNIPQ+DGGTHL+G R 
Sbjct: 121 YLDRHKTPVMAEPIFMTGERDGIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRG 180

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I +Y   S  +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR 
Sbjct: 181 ALTRTINNYAMSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRP 240

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES VN+ L+ W EE+P +A+ IV K+++A++ R+AAR+AR+LTRRK  +D+ASLPGKL
Sbjct: 241 AVESLVNEKLAEWFEENPQQARQIVGKIIEAALAREAARKARELTRRKTAMDVASLPGKL 300

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP KSE+FLVEGDSAGGSAKQGRSR NQA+LPLRGKILNVERARFD+MLSSQEI
Sbjct: 301 ADCQERDPAKSEIFLVEGDSAGGSAKQGRSRANQAVLPLRGKILNVERARFDRMLSSQEI 360

Query: 475 GTLITALGTGIGQDSFDINKLRYHKI 500
           GTLITALGTGIG+D FDI+KL YHKI
Sbjct: 361 GTLITALGTGIGRDEFDISKLGYHKI 386


>gi|82568129|dbj|BAE48499.1| DNA gyrase B [Thermoactinomyces vulgaris]
          Length = 391

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 207/393 (52%), Positives = 278/393 (70%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YK SGGLHGVGVSVVNALS WL + +KR+G IY   +  G+ D  L V G    +TG
Sbjct: 1   GDGYKFSGGLHGVGVSVVNALSIWLSVEVKRDGKIYHQRYQRGVPDADLEVIGETE-ETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T++TF P  +IF+    F+++ LQ+RLREL+FLN  V+I L D R  E +E+   ++GGI
Sbjct: 60  TKITFKPDPEIFTETTEFDFNILQNRLRELAFLNGGVKIILKDLRGEEEKEVVFQFEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +LDR+++ L Q P+ IQG RD+I I++A+++ND +  N+  + NNI   +GGTH 
Sbjct: 120 RSFVEHLDRNREVLNQPPVYIQGERDSILIEIALQYNDSFTSNIYSYANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  ++   K +  ++ GDD REG T+++S+K+ DP+F  QTK KL +
Sbjct: 180 AGFKSALTRVINDYARRNNLLKDNDSNLTGDDVREGLTAIISVKIMDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE RS  E    D    +L+EHP EAK I+ K + AS  R AAR+AR+LTRRK  L++++
Sbjct: 240 SEARSATEQLFADHFQTYLDEHPAEAKKIINKAVMASRARQAARKARELTRRKNALEVSA 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ R  + SELF+VEGDSAGG+AKQGR R  QAILPL+GKI+NVE+AR D+ L
Sbjct: 300 LPGKLADCTSRSAQDSELFIVEGDSAGGTAKQGRDRMFQAILPLKGKIINVEKARLDRAL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI T+ITALGTGIG D F+I K RYHKIII
Sbjct: 360 SNDEIRTIITALGTGIG-DDFNIEKARYHKIII 391


>gi|83755259|gb|ABC46477.1| gyrase B [Candidatus Paenicardinium endonii]
          Length = 412

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 212/413 (51%), Positives = 292/413 (70%), Gaps = 9/413 (2%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF++ SYKVSGGLHGVGVS VNALSS L++ + R G IY+ ++  G   + +   G 
Sbjct: 1   AGGKFDKNSYKVSGGLHGVGVSCVNALSSHLQVTVYRNGKIYQQTYAQGTPLHAVQAIG- 59

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPRE 220
           A +  GT V F P S IF+   +N  T+ +RL+EL++LN  ++I+L DKR      EP +
Sbjct: 60  ATDLRGTTVHFTPDSTIFTTTVYNAHTIANRLQELAYLNLGLRITLEDKRERNESQEPFK 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T + K G+ AFV +L   K+ +M  PI I+G+++N+++ +AM +N GY E V  + NNI
Sbjct: 120 QTFYSKEGLRAFVLHLSSGKEFIMPEPILIEGTKNNVAVQVAMTYNTGYSETVASYVNNI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           P  +GG H++G + ALTR + +Y +KS   +K K  +IGDD REG T+V+S+K+ +P+F 
Sbjct: 180 PTIEGGMHVTGFKRALTRTLKNYADKSNLLEKAKVEIIGDDFREGLTAVISVKVAEPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+  VES V + L  +LEEHP EAK I+ KV+ A+  R AAR+AR++ +
Sbjct: 240 GQTKAKLGNAEVQGAVESCVAETLYYYLEEHPKEAKYIIDKVIIAAQARQAARKAREIIQ 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK VL  +SLPGKLADCSERDPK  ELFLVEGDSAGG+AK GR+R  QAILPL+GKILNV
Sbjct: 300 RKNVLVGSSLPGKLADCSERDPKLCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQD----SFDINKLRYHKIIIMTDADVD 509
           E+A+  K+  +++I  +ITALG  +G+D      D++KLRYHKI+IMTDADVD
Sbjct: 360 EKAQLYKIYDNEQIRNMITALGITLGKDIEDKPMDLDKLRYHKIVIMTDADVD 412


>gi|281484872|gb|ADA70305.1| DNA gyrase subunit B [Photobacterium damselae]
          Length = 383

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 227/385 (58%), Positives = 296/385 (76%), Gaps = 3/385 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  ++L I R G+I+   + +G+   PL V G   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PSS+ F+   F Y+ L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AF
Sbjct: 60  IRFWPSSETFTNTTFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKQDHFMYEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+R+K P+ Q        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VEHLNRNKTPIHQKVFHFNVEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR + +Y+EK   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES + + L  +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A LP
Sbjct: 239 VKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLR 496
           QE+ TLITA+G GIG+D ++ +KLR
Sbjct: 359 QEVATLITAMGCGIGRDEYNPDKLR 383


>gi|164690653|dbj|BAF98610.1| gyrase B [Sporolactobacillus kofuensis]
          Length = 389

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 194/393 (49%), Positives = 271/393 (68%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ + +++ R G++Y   +  G     L + G +   TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTKMWVKVYRNGHVYYQEYHRGKPVADLKIIGDSE-QTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF+    F Y+TL+ R+REL+FLN +++IS+ D+R  E ++ T  Y+GGI
Sbjct: 60  TTTHFDPDPEIFTDTTTFEYETLRVRVRELAFLNKNIRISIEDRR-EEDKKETFHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+R K+ + Q    ++G +D I +++AM++N G+   +  F NNI   +GGTH 
Sbjct: 119 RSYVEFLNRSKEVIHQPID-LEGEKDGIKVEIAMQYNSGFSSQLYSFANNIHTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G + ALTR I  Y  K+   K    ++ GDD REG T+++S+K PDP+F  QTK KL +
Sbjct: 178 YGFKVALTRVINDYARKNQFIKGSDANLTGDDVREGLTAIVSVKHPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR++ ++  +D  S +L E+P  A++IV K + AS  R AA++AR+LTRRK  L+++S
Sbjct: 238 SEVRAITDTLFSDSFSRFLMENPDVARLIVDKGIIASRARTAAKKARELTRRKSSLEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRLYQAILPLRGKIINVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITALGTGIG D F++ K RYHKIII
Sbjct: 358 SNAEIRAMITALGTGIG-DEFNLEKARYHKIII 389


>gi|155029071|dbj|BAF75421.1| DNA gyrase B [Halobacillus faecis]
          Length = 389

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 195/393 (49%), Positives = 276/393 (70%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + R+GNI+  ++  G+ +  L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTKLEVFVHRDGNIHYQAYHRGVPEEDLKVIGET-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F P  +IFS    + ++ L +RLREL+FLN  + IS+ DKR+ E   +  +++GGI
Sbjct: 60  TRIQFKPDPEIFSETQEYKFEILANRLRELAFLNKGLTISIEDKRTDEEP-VNYYFEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +++R ++ L      I+  +D IS ++AM++NDG+  N+  + NNI   +GGTH 
Sbjct: 119 LSYVEHMNRTRETLH-DAFFIEDEQDEISXEIAMQYNDGFASNIYSYANNIHTYEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 178 SGFKTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R+V +S  ++  + +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++
Sbjct: 238 SEARTVTDSLFSESFTKFLFENPNMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSN 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLADCSSKDANISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+  +ITALGTGIG++ FDI+K RYHKI+I
Sbjct: 358 SNNEVRAIITALGTGIGEE-FDISKARYHKIVI 389


>gi|145309493|dbj|BAF56644.1| DNA gyrase subunit B [Alicyclobacillus kakegawensis]
          Length = 389

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 194/393 (49%), Positives = 272/393 (69%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS WL++ + R+G ++   +  G+    L V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSEWLRVEVHRDGKVHVQEYERGVPLYDLKVVG-TTDHTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V+F P  +IF+    F  D LQ RLREL+FLN+ ++I   D+R  + R       GG+
Sbjct: 60  TIVSFRPDPEIFTETTEFQSDILQGRLRELAFLNAGLEIMYNDEREGKSRTYCY--SGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L + P+ ++G R ++S+++A+++NDGY   +  F NNI   +GG+H 
Sbjct: 118 SEFVRFLNKSKDVLHEDPVFVKGVRQDVSVEIALQYNDGYAAVLYSFANNIHTHEGGSHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ALTR I  Y  K    K ++ ++ GDD REG T+++S+K+PDP+F  QTK KL +
Sbjct: 178 AGFKAALTRVINDYARKMNLLKDNESNLTGDDVREGLTAIVSVKVPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +V+   +D   A+LE++P  A+ IV K + A+  R+AAR+AR++TRRK  L+++S
Sbjct: 238 SEVRGIVDGLFSDKFYAFLEQNPSVARRIVDKSITAARAREAARKAREVTRRKSALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D    EL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLADCSSKDASVCELYIVEGDSAGGSAKQGRDRNFQAILPLRGKIINVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI ++ITA+GTGIG D FDI K RYHKI+I
Sbjct: 358 SNAEIRSIITAIGTGIG-DEFDIAKARYHKIVI 389


>gi|35210325|dbj|BAC92674.1| gyrase B subunit [Alicyclobacillus pomorum]
          Length = 389

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 207/393 (52%), Positives = 279/393 (70%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS WLK+ + R+G IY   F  G +   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEWLKVVVYRDGKIYTQEFERGNVKYDLKVIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T VTF P   IF+    F+ D LQ+RLREL+FLN+ ++I   D+R  E  ++T  Y GG+
Sbjct: 60  TTVTFKPDPQIFTETTEFSADVLQNRLRELAFLNAGLEIVYEDER--EDNQVTYCYSGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFV +L++ K  L  +P+ + G +D++++++A+++NDGY   +  F NNI   +GG H 
Sbjct: 118 AAFVEFLNKSKDVLHPTPVYVTGVKDDVTVEIALQYNDGYSTTLFSFANNIHTHEGGAHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K+++ ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 SGFKSALTRVINDYARKNNIVKENESNLTGDDVREGLTAIVSVKVPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES   D L  + +E+P  A+ I++K + A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 238 SEVRGIVESLFGDKLQVFFDENPSVARKIIEKSVTAARAREAARKARELTRRKNALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL+LVEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLADCSSKDASISELYLVEGDSAGGSAKQGRDRNFQAILPLRGKIINVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+QEI  +ITALGTGIG D FDI K RYHKI+I
Sbjct: 358 SNQEIRAIITALGTGIG-DDFDITKARYHKIVI 389


>gi|297614608|gb|ADI48606.1| DNA gyrase subunit B [Shewanella sp. KJW23]
          Length = 387

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 226/390 (57%), Positives = 299/390 (76%), Gaps = 4/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G    P+   G A   TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEAT-KTGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS + F+  +F+Y+ L  R+RELSFLNS V I LID+R  +       Y+GGI+AF
Sbjct: 60  IRFWPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLIDERDNKD--EFFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V YL+R+K P+ +        R++ I++++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G
Sbjct: 118 VEYLNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LP
Sbjct: 238 VKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D +D  K RYH II
Sbjct: 358 QEVATLITALGCGIGRDEYDPEKTRYHYII 387


>gi|306517917|emb|CBL53382.1| gyrase B subuni [Photobacterium rosenbergii]
          Length = 385

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 224/387 (57%), Positives = 296/387 (76%), Gaps = 3/387 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L I R G+I++  + +G    PL + G     TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRGGSIHQQVYHHGEPQAPLGIIGETE-KTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F PS++ FS  +F Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI A
Sbjct: 60  RIRFWPSAETFSNIEFQYEILAKRLRELSFLNSGVSIKLIDER-EEDKQDHFMYEGGIRA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+R+K P+       + +R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 FVEHLNRNKTPIHPKVFHFEFTREDGIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + ++++K    KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRGALTRTLNNFMDKEGYLKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VES + + LS +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A L
Sbjct: 239 EVKPAVESTMGEKLSEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 299 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRY 497
           SQE+ TLITA+G GIG+D ++ +KLRY
Sbjct: 359 SQEVATLITAMGCGIGRDEYNPDKLRY 385


>gi|317448554|emb|CBW30249.1| gyrase B subunit [Pseudoalteromonas carrageenovora]
          Length = 391

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 234/393 (59%), Positives = 306/393 (77%), Gaps = 6/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL + G +   TGTE+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAIIGDSE-TTGTEL 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS + F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV
Sbjct: 60  RFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-EENKSDHFKYEGGIQAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            YL+R+K P+ +        R+   IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 EYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 FRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  + +  + +L E+P++AKI+V K++DA+  R+AAR+AR++TRRKG +D+A 
Sbjct: 239 SEVKSAVEQAMAEKFTDFLLENPMDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+ TLITALG GIG+D ++  KLRYH+III
Sbjct: 359 SSQEVATLITALGCGIGRDEYNPEKLRYHRIII 391


>gi|83017277|dbj|BAE53557.1| DNA gyrase B [Microbulbifer sp. MBIC06448]
 gi|83017279|dbj|BAE53558.1| DNA gyrase B [Microbulbifer sp. MBIC06406]
          Length = 389

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 226/392 (57%), Positives = 297/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G IYE ++  G+   PL V G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELKLTIRRAGRIYEQTYHQGVPQAPLGVVGES-DSTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSANTFSNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EVYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV++L+++K P+ +         D I++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVAFLNQNKTPINKVLHFHSQREDGIAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGQHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|66474503|gb|AAY46821.1| GyrB [Aeromonas caviae]
          Length = 385

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 231/388 (59%), Positives = 296/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + 
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDPYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNNYMDKEDSSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|23978267|dbj|BAC21121.1| DNA gyrase B subunit [Nodularia sp. PCC 73104]
          Length = 396

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 184/395 (46%), Positives = 258/395 (65%), Gaps = 7/395 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L G+   I V +N DGS TV+D+GRGIP D H   G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGHCTHIEVDINADGSVTVTDDGRGIPIDTHSRTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVG+SVVNALS  L++ + R+  ++   +  G+  
Sbjct: 62  ETVLTVLHAGGKFGGGGYKVSGGLHGVGLSVVNALSDVLEVTVWRDNKVHVQRYERGVPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L+        TGT + F P S IF    +F+Y T+  RLREL++LN+ V+I   D R 
Sbjct: 122 TELIAKPDKEGKTGTSIKFNPDSQIFINTVEFDYITIAGRLRELAYLNAGVKIIFGDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S  PR  T  YKGGI+ +++Y++R K+PL +  I + G R+N+ ++++++W  D Y
Sbjct: 182 ELLKSDTPRIETYEYKGGIKEYIAYMNRDKQPLHEEIIYVHGERNNVQVEVSLQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G+  REG T+V
Sbjct: 242 TDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNAIARKRNKIKENESNLSGEHVREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + LS +LE HP  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLSEYLEFHPGIADSILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +AAR AR+L RRK VL+ + LPGKLADCS RDP +
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDPSE 396


>gi|23978255|dbj|BAC21118.1| DNA gyrase B subunit [Oscillatoria sp. PCC 7112]
          Length = 396

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 186/393 (47%), Positives = 258/393 (65%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L G+   I + LN DGS TV+D+GRGIPT +  + G S  
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGHCTHIEIDLNADGSVTVTDDGRGIPTGIVAKTGKSGI 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVG+SVVNALS W+++ +  +   +   +  G   
Sbjct: 62  ETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVTVWLDQKEHLQRYERGNPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L V  + G  TGT V+FLP + IF+   +F+Y TL  RLREL +LN+ V+I+  D R 
Sbjct: 122 TELKVKPNKGTRTGTSVSFLPDTQIFTTGIEFDYTTLAGRLRELGYLNAGVRITFSDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S EP   T  Y+GGI+ +++Y+     PL    I +QG R+N+ I++A++W  D +
Sbjct: 182 ALLKSSEPYIETYCYEGGIKEYIAYMTAKNSPLHDEVIYVQGERNNVQIEVALQWCVDAF 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + S   K    K+++ ++ G++ REG T+V
Sbjct: 242 SDNVLGFANNIRTIDGGTHLEGLKAVLTRTMNSIARKRNKIKENEPNLAGENVREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE  P  A  I++K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPQVADAILEKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AARRARDL RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARRARDLVRRKSVLESSPLPGKLADCSSRDP 394


>gi|31071473|dbj|BAC76785.1| DNA gyrase B subunit [Tolypothrix sp. IAM M-259]
          Length = 396

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 187/393 (47%), Positives = 261/393 (66%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   + V +N DGS TV+D+GRGIPTDLH + G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHVEVDINADGSVTVTDDGRGIPTDLHPKTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LH GGKF    YKVSGGLHGVG+SVVNALS  +++ + R+  ++   +  GI  
Sbjct: 62  ETVLTVLHTGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHIQRYERGIPA 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L         TGT VTF P + IF+   +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELQTKPYKEARTGTSVTFKPDTQIFTTGIEFDYITLAGRLRELAYLNAGVKITFTDNRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S  P+  T  YKGGI+ +V+Y++R K+PL +  I +QG R N+ +++A++W  D Y
Sbjct: 182 ELLKSDTPKVETYEYKGGIKEYVTYMNREKQPLHEEIIYVQGERSNVQVEVALQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G+  REG T+V
Sbjct: 242 TDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEANLSGEHVREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE HP  A  ++ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIADSVLDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|145309489|dbj|BAF56642.1| DNA gyrase subunit B [Alicyclobacillus fastidiosus]
          Length = 390

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 201/391 (51%), Positives = 279/391 (71%), Gaps = 4/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            YKVSGGLHGVG SVVNALS+WLK+ + R+GN+Y   +  G+    L + G   +  GT 
Sbjct: 3   GYKVSGGLHGVGASVVNALSTWLKVEVYRDGNVYVQEYERGVPQYDLKIIG-TTDQHGTS 61

Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V+FLP  +IF+    F  + LQHRLREL+FLN+ + I L D+R     +    Y+GG++ 
Sbjct: 62  VSFLPDPEIFTETTVFQIEMLQHRLRELAFLNAGLAIVLEDEREGGKTQE-FHYEGGVKE 120

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FVSYL+R K  L + P+ + G +D++++++A+++NDGY   +  F NNI   +GGTH SG
Sbjct: 121 FVSYLNRSKDVLHEDPVFVAGVKDDVTVEVALQYNDGYASTIYSFANNINTGEGGTHESG 180

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +SALTR I  Y  K+   K ++ ++ GDD REG  SV+S+K+P+P+F  QTK KL +SE
Sbjct: 181 FKSALTRVINDYGRKNNLIKGNESNLTGDDVREGIVSVISVKVPEPQFEGQTKTKLGNSE 240

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR +VES   D L  +L+E+P  A+ I+ K + AS  R+AAR+AR+LTRRK  L+++SLP
Sbjct: 241 VRGIVESLFGDKLQTFLDENPSVARKIIDKCVTASRAREAARKARELTRRKSALEVSSLP 300

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL DC  +DP++SE++LVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+LS+
Sbjct: 301 GKLTDCVTKDPERSEIYLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKILSN 360

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +EI  +ITA GTGIG D FD++K RYHK++I
Sbjct: 361 EEIRAIITASGTGIG-DEFDLSKARYHKVVI 390


>gi|83017299|dbj|BAE53567.1| DNA gyrase B [Microbulbifer salipaludis]
          Length = 389

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 225/392 (57%), Positives = 295/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E  + +G+ D PL + G     +G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELKLTIRRGGKIHEQIYRHGVPDAPLAIIGDTE-TSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS+D F+  +F+++ L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TAVHFKPSADTFTNIEFHFEQLAKRLRELSFLNSGVRIVLRDERSGKE--EVYEYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQNQREDGIAVEVALQWNDSFQENIYCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+EK    KKDK S  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNNYIEKEGVGKKDKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHSFNDYLLENPQEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|295979577|dbj|BAJ07461.1| DNA gyrase subunit B [Ralstonia sp. GTF1Y]
          Length = 324

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 156/327 (47%), Positives = 216/327 (66%), Gaps = 24/327 (7%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP----TDLHK 89
           DT   +GLHH+++EVLDN+IDE+L G+   ITVT++ D S +++DNGRGIP     D   
Sbjct: 1   DTSDGTGLHHLVFEVLDNSIDEALAGWCTEITVTIHSDNSISITDNGRGIPPLVKFDDKH 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E   SAAE+ MT LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G  + + 
Sbjct: 61  EPKRSAAEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQAHLLE 120

Query: 150 FING-----------------ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
           F  G                 +  +P+ V G   +  GTEV FL   +IF+  +F+Y+ L
Sbjct: 121 FAQGAVQNRLVETVPGPDGVPVEVSPMKVIGPT-DKRGTEVHFLADEEIFTNVEFHYEIL 179

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             R+RELSFLN+ V I L D+R+ +       + GG++ FV Y++R K  L  +      
Sbjct: 180 SKRIRELSFLNNGVHIRLTDQRTGKE--EDFAFSGGVKGFVEYINRGKSTLHPNIFYANT 237

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D I+++++M+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR +  Y+E++  +KK
Sbjct: 238 EKDGIAVEVSMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVMNKYIEENEIAKK 297

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRF 339
            K    GDD REG   VLS+K+P+P+F
Sbjct: 298 AKVETTGDDMREGLACVLSVKVPEPKF 324


>gi|38707277|emb|CAE82159.1| DNA gyrase B subunit [Shewanella decolorationis]
          Length = 395

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 229/398 (57%), Positives = 301/398 (75%), Gaps = 5/398 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E  + +G+ D P+ V G A   TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDAT-KTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           E+ F PS + FS  +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI A
Sbjct: 60  EIRFWPSEETFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV YL+R+K P+ +        RD+ I++++AM+WNDGY E++ CFTNNIPQ+DGGTHL+
Sbjct: 118 FVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDC-REGFTSVLSIKMPDPRFSSQTKEKLVS 349
           G RSALTR + +Y+E    ++K K +  GDD  R         K+PDP+FSSQTK+KLVS
Sbjct: 178 GFRSALTRNLNNYMENEGYNQKGKTNATGDDAPRRFNGPGFQFKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  
Sbjct: 238 SEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           SSQE+ TLITALG GIG+D ++ +K RYH IIIMTDAD
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDAD 395


>gi|23978280|dbj|BAC21124.1| DNA gyrase B subunit [Leptolyngbya sp. PCC 7375]
          Length = 396

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 181/393 (46%), Positives = 261/393 (66%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN++DE+L GY   IT+ LN DGS TV+D+GRGIPTD+H   G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSVDEALAGYCKTITIDLNADGSVTVTDDGRGIPTDVHARTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVGVSVVNALS W+++ + R    +   +  G   
Sbjct: 62  ETVMTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRNKKEHLQRYERGEAQ 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L V   A + TGT V+F P   IF+   +F+Y TL  RLREL++LN+ V I+  D R 
Sbjct: 122 GELSVKSGADSQTGTSVSFKPDQLIFTETVEFDYSTLAGRLRELAYLNAGVDITFTDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               + EP+    FY+GGI  +V Y+++ K+P+    I + G ++ + ++ A++W+ D Y
Sbjct: 182 ELLKADEPKINRYFYEGGIREYVEYINKEKQPIHPDIIYVTGEKNGVQVEAALQWSVDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +N++ F NNI   DGGTHL GL++ LTR + ++  K    K ++ ++ G++ REG T+V
Sbjct: 242 SDNLMGFANNIRTVDGGTHLEGLKAVLTRTMNNFARKRNKRKDNEPNLAGENIREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+P+P F  QTK KL ++EVR +V+S + + LS +L+ +P     I++K + +    
Sbjct: 302 ISVKVPEPEFEGQTKTKLGNTEVRGIVDSLIGETLSEYLDFNPNVVDSILEKAIQSFNAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AARRARDL RRK VL+ ++LPGKLADCS RDP
Sbjct: 362 EAARRARDLVRRKSVLESSTLPGKLADCSSRDP 394


>gi|307939292|gb|ADN95837.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 432

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 204/433 (47%), Positives = 287/433 (66%), Gaps = 21/433 (4%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF++ SYKVSGGLHGVGV  VNALS+ LK+ ++R G+ YE  +  GI    + 
Sbjct: 1   TVLHAGGKFDKGSYKVSGGLHGVGVRXVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDVK 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----P 216
             G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R      
Sbjct: 61  EVGLSE-EHGTEVQFLPDASIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLEGG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
             R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV  
Sbjct: 120 VFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVYS 179

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+ 
Sbjct: 180 YVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKVQ 239

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+A
Sbjct: 240 EPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARKA 299

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLRG
Sbjct: 300 KDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLRG 359

Query: 456 KILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLRYHKI 500
           KILNVE+A+  ++L ++EI  +ITALG                G      + +KLRYH++
Sbjct: 360 KILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSKLRYHQV 419

Query: 501 IIMTDADVDGAHI 513
           II TDADVDG  I
Sbjct: 420 IIXTDADVDGXDI 432


>gi|83017268|dbj|BAE53553.1| DNA gyrase B [Microbulbifer sp. MBIC06120]
          Length = 389

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 225/392 (57%), Positives = 297/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E ++ +G+   PL + G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSRELKLTIRRGGKIHEQTYHHGVPQAPLDIVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS+D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSADTFSNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EVYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQSQREDGIAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|323462873|pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit
 gi|323462877|pdb|3LPS|A Chain A, Crystal Structure Of Pare
          Length = 408

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 213/398 (53%), Gaps = 10/398 (2%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            N+ Y+A  I++L GLD VK+RP MY   TD     +H+  EV+DN++DE+L G+A  I 
Sbjct: 20  HNTRYNAADIEVLSGLDPVKRRPGMY---TDTARP-NHLAQEVIDNSVDEALAGHAKQIE 75

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGSC VSD+GRG+P D+H EE I   E+I+TRLHAGGKFN ++Y  SGGLHGVGV
Sbjct: 76  VTLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGV 135

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184
           SVVNALS+ ++L IKREG+ + M F +G   + L V G+    +TGT + F      F  
Sbjct: 136 SVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDT 195

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             FN   L+H LR  + L   + + L D+ + E        + G+  ++       + L 
Sbjct: 196 PKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAEHEMLP 253

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                    +D   +D A  W          + N IP    GTH++GLRS LT  +  + 
Sbjct: 254 ADLFVGSLKKDTEIVDWAAGWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFC 313

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +      +    +  +D  +  T VLS+KM DP+FS QTKE+L S +    +E   +D  
Sbjct: 314 DFRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAF 372

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           S +L ++    + I +  +D        +  + + R+K
Sbjct: 373 SLYLNQNVEIGEKIAQIAID--RASARLKTEKQIVRKK 408


>gi|155029073|dbj|BAF75422.1| DNA gyrase B [Amphibacillus sediminis]
          Length = 390

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 202/393 (51%), Positives = 275/393 (69%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + R+ NIY + F  G+  N L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTSLEVYVHRDNNIYFLGFEKGVPKNELEVIGET-DVTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     +NYDTL +RLREL+FLN  ++IS+ DKR  + +    +Y+GGI
Sbjct: 60  TRTHFTPDPEIFEETTVYNYDTLAYRLRELAFLNKGLRISIEDKRQEQVKREDFYYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L++ K+ L   P   +     I++++A+++NDG+   +  F NNI   +GG H 
Sbjct: 120 KSYVEHLNQSKEVLH-EPFYAEKEEQGITVEVAIQYNDGFASQIYSFANNIHTYEGGMHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 179 SGFKTGLTRVINDYARKNNLFKEADPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  ++  S +L E+P  AKIIV+K L AS  R AA++AR+LTRRKG L+I++
Sbjct: 239 SETRTITDATFSELFSKFLFENPDTAKIIVEKGLMASRARLAAKKARELTRRKGALEISN 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS RD   SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSRDATISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI ++ITALGTGIG+D FDI K RYHKI+I
Sbjct: 359 SNNEIRSIITALGTGIGED-FDITKARYHKIVI 390


>gi|83853993|gb|ABC47934.1| gyrase B subunit [Vibrio cholerae]
          Length = 384

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 228/386 (59%), Positives = 298/386 (77%), Gaps = 3/386 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV+
Sbjct: 60  FWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVT 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 HLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 GALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 239 SAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 299 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 358

Query: 474 IGTLITALGTGIGQDSFDINKLRYHK 499
           + TLITALG GIG+D ++ +KLRYH 
Sbjct: 359 VATLITALGCGIGRDEYNPDKLRYHN 384


>gi|126035258|gb|ABN72382.1| gyrase B subunit [Enterobacter cloacae]
          Length = 387

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 236/390 (60%), Positives = 302/390 (77%), Gaps = 4/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|145309495|dbj|BAF56645.1| DNA gyrase subunit B [Alicyclobacillus shizuokensis]
          Length = 389

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 194/393 (49%), Positives = 269/393 (68%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS WL++ + R+G ++   +  G+    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEWLRVEVHRDGKVHVQEYERGVPLYDLKVVG-TTDHTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V+F P   IF+    F  D LQ RLREL+FLN+ ++I   D+R  + R       GG+
Sbjct: 60  TIVSFRPDPQIFTETTEFQSDILQGRLRELAFLNAGLEIVYNDEREGKSRTYCY--SGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L   P+ ++G R ++S+++A+++NDGY   +  F NNI   +GG+H 
Sbjct: 118 AEFVRFLNKSKDVLHDDPVFVKGVRQDVSVEIALQYNDGYAAVLYSFANNIHTHEGGSHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ALTR I  Y  K    K ++ ++ GDD REG T+++S+K+PDP+F  QTK KL +
Sbjct: 178 AGFKAALTRVINDYARKMNLLKNNESNLTGDDVREGLTAIVSVKVPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +V+    D   A+LE++P  A+ IV K + A+  R+AAR+AR++TRRK  L+++S
Sbjct: 238 SEVRGIVDGLFADKFYAFLEQNPSVARKIVDKSITAARAREAARKAREVTRRKSALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D    EL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLADCSSKDASVCELYIVEGDSAGGSAKQGRDRNFQAILPLRGKIINVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI ++ITA+GTGIG D FDI K RYHKI+I
Sbjct: 358 SNAEIRSIITAIGTGIG-DEFDIAKARYHKIVI 389


>gi|4996818|dbj|BAA78454.1| subunit B protein of DNA gyrase [bacterium rM17]
          Length = 299

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 158/302 (52%), Positives = 204/302 (67%), Gaps = 9/302 (2%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGIS 94
             +GLHHM++EV+DNAIDE+L G+ D I VT++ D S +V+DNGRGIPTD+HK  E G S
Sbjct: 1   DGTGLHHMVFEVVDNAIDEALAGHCDDIVVTIHADNSVSVTDNGRGIPTDIHKDDEFGRS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAE++MT LHAGGKF+  SYKVSGGLHGVGVS VNALS WL+L I R G  +EM F  G 
Sbjct: 61  AAEIVMTELHAGGKFDHNSYKVSGGLHGVGVSCVNALSEWLRLTIWRNGKTHEMEFRQGE 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL VTG + +  GT V FL  S IF   ++ YD L  RLRELSFLN+ V++ LID+R
Sbjct: 121 RVEPLSVTG-SSDRKGTSVRFLADSTIFENIEYQYDVLAKRLRELSFLNNGVKVRLIDER 179

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYH 270
             +       + GG++ FV Y++R K  L  +   +    +     + +D+AM+WND Y 
Sbjct: 180 QGKE--EDFAFLGGVKGFVDYINRAKTVLHPNVFSVSTESNAGGETVGVDVAMQWNDSYS 237

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E VLCFTNNIPQ+DGG+HL+GLR+A+TR I  Y+  +  +KK K    GDD REG   VL
Sbjct: 238 ETVLCFTNNIPQRDGGSHLTGLRAAMTRVINKYIADNELAKKAKVDTSGDDMREGLACVL 297

Query: 331 SI 332
           S+
Sbjct: 298 SV 299


>gi|315606879|ref|ZP_07881888.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
           ATCC 33574]
 gi|315251544|gb|EFU31524.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
           ATCC 33574]
          Length = 679

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 156/562 (27%), Positives = 262/562 (46%), Gaps = 56/562 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEG 59
           N    +Y  D+I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN+IDE    
Sbjct: 36  NHDTPTYTDDNIRHLSDMEHVRTRPGMYIGRLGDGSLPEDGIYVLLKEVIDNSIDEFKMN 95

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
             D I V ++ +   +V D GRGIP            E + + L+ GGK++ K++K S G
Sbjct: 96  AGDRIEVDIDDNLRVSVRDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFKKSVG 147

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVG+  VNALS+  + +  R+G + E+ F  G+L +    T    +++GT + F P +
Sbjct: 148 LNGVGLKAVNALSARFEAKSYRDGTVRELVFERGVLKDD--ETHETSDESGTFIFFEPDA 205

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            +F    F+ D ++  LR  ++LN+ + I    +R             G++  ++     
Sbjct: 206 LLFKNYKFHDDIVETMLRNYTYLNTGLTIMYNGRRILSRH--------GLKDLLTDNMTV 257

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
               +   + ++G      I++A    + Y E    F N      GGTH S  +  + + 
Sbjct: 258 --DGLYDIVHVKGED----IEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAKT 311

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS----- 354
           I  +  K              D R G  + +++ + +P F SQTK KL S+++       
Sbjct: 312 IKEFYGKYEY----------GDIRNGLVAAIALNVEEPVFESQTKIKLGSTQMAPDGDSI 361

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA------RRARDLTRRKGVLD 406
              V  F+   +  +L  H   A++I  K+ ++   R A        R R          
Sbjct: 362 NKYVGDFIKKEIDNYLHIHQDVAEVIENKIKESERERKAMAGVTKLARERAKKANLHNRK 421

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           +       +D      +++ +F+ EGDSA GS  + R    QA+  LRGK LN       
Sbjct: 422 LRDCRIHFSDVKNERKEEASIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKK 481

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  P
Sbjct: 482 VVYENEEFNLLQAALDIEDG-----LDTLRYNKVIVATDADVDGMHIRLLIITFFLQFFP 536

Query: 527 SLIHNGFLYIIKPPLYGITRGK 548
            LI  G +Y+++ PL+ +   +
Sbjct: 537 ELIKKGHVYVLQTPLFRVRNKR 558


>gi|33590344|gb|AAQ22712.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii]
          Length = 384

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 228/387 (58%), Positives = 296/387 (76%), Gaps = 4/387 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTG 59

Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS D F    +F +D L  RLRELSFLNS V I LIDKR+    E    Y+GGI
Sbjct: 60  TRVRFWPSMDTFRDNTEFQHDILAKRLRELSFLNSGVSIRLIDKRT--NIEDHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLR 496
           SSQE+ TLITALG GIG+D ++ +KLR
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLR 384


>gi|32480597|gb|AAP83864.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 232/394 (58%), Positives = 296/394 (75%), Gaps = 2/394 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL- 59

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                 GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +Q+SLID+R  E R    
Sbjct: 60  EVSAKRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLQVSLIDER-GEGRRDDF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQK
Sbjct: 119 HYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETIYCFTNNIPQK 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KEKLVSS+V+  VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKG
Sbjct: 239 KEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERA
Sbjct: 299 VLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           RFD+MLSS E+GTLITALGTGIG+D ++ +KLRY
Sbjct: 359 RFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|23978263|dbj|BAC21120.1| DNA gyrase B subunit [Fischerella muscicola]
          Length = 396

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 188/393 (47%), Positives = 261/393 (66%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   + V LN DGS TV+D+GRGIPT +  + G S  
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTGIVAKTGKSGL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVGVSVVNALS W+++ + R+ N++   +  GI  
Sbjct: 62  ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRDKNVHTQRYERGIPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L V     N TGT V+F P S IF+   +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELNVKPYKDNRTGTSVSFQPDSQIFTTGTEFDYTTLASRLRELAYLNAGVKITFTDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S +P+  T  YKGGI  +++Y++  K+PL +  I +QG R+N+ +++A++W  D Y
Sbjct: 182 ELLKSDQPKVETYEYKGGIREYITYINADKQPLHEEVIYVQGERNNVQVEVALQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K ++ ++ G+  REG T V
Sbjct: 242 TDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKDNEPNLSGEHVREGLTGV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE HP  A  ++ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGETLTEYLEFHPSVADAVLDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|226327149|ref|ZP_03802667.1| hypothetical protein PROPEN_01014 [Proteus penneri ATCC 35198]
 gi|225204367|gb|EEG86721.1| hypothetical protein PROPEN_01014 [Proteus penneri ATCC 35198]
          Length = 387

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 215/393 (54%), Gaps = 9/393 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  SSY+A  I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  +
Sbjct: 1   MTQSSYNAKDIEVLNGLEPVRRRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGHASKV 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            V L  D S  V DNGRG+P D+H E  +SA E+I+  LHAGGKF+ K+Y+ SGGLHGVG
Sbjct: 57  DVILYADQSIEVIDNGRGMPVDIHPELKVSAIELILAHLHAGGKFSNKNYQFSGGLHGVG 116

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSDIFS 183
           +SVVNALS  +++ ++R+G IY+++F NG     L   G  A  DTGT V F P    F 
Sbjct: 117 ISVVNALSKRIEVTVRRDGKIYQIAFENGDKVEELHEIGTCAKRDTGTSVHFWPDGAYFD 176

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V  F+  +L H L+  + L   V +S +DK +         Y  G+  ++S        L
Sbjct: 177 VPRFSSKSLSHVLKAKAVLCPGVNVSFVDKVNNTQ--ENWCYADGLTDYLSEAVAEFVRL 234

Query: 244 MQSPIRIQGSRDNISIDLAM-RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + P   +   DN +++ +M    +G       + N IP   GGTH++GLR  +   +  
Sbjct: 235 PEEPFTGKFEGDNEAVEWSMLWLPEGGDLLTESYVNLIPTVQGGTHVNGLRQGVLDAMRE 294

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           + E      +    +  DD  E    VLS+KM DP+F+ QTKE+L S +  + V + V +
Sbjct: 295 FCEFRNLLPRG-LKLTADDTWERCAYVLSVKMQDPQFAGQTKERLSSRQTSAFVANAVKN 353

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
             S WL ++    +++ +  + ++  R  A + 
Sbjct: 354 AFSLWLNQNVQVGELLAEMAISSAQRRMRAAKK 386


>gi|126035272|gb|ABN72389.1| gyrase B subunit [Enterobacter cloacae]
          Length = 388

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 236/390 (60%), Positives = 302/390 (77%), Gaps = 4/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG   + TGT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTM 60

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 61  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 239 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRYHSII 388


>gi|118026324|emb|CAL44984.1| gyrase B [Vibrio sp. NRP 45]
          Length = 393

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 235/393 (59%), Positives = 306/393 (77%), Gaps = 3/393 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R+G+ ++ ++ +G  D PL VTGS  + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVDLTIYRQGSTHQQTYRHGEPDAPLGVTGST-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + F PS + F+   F+Y+ L  RLRELSFLNS V I LID+R  E +     Y+GG 
Sbjct: 60  GTVIRFWPSENTFTNVHFHYEILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFCYEGGT 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV YL+ +K P++Q        R++ IS+++AM+WNDGY EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVDYLNTNKTPIIQKVFHFDYEREDGISVEVAMQWNDGYQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLIENPSEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSSQE+ TLITALG GIG+D ++ +KLRYH I 
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIH 391


>gi|332883597|gb|EGK03878.1| hypothetical protein HMPREF9456_01419 [Dysgonomonas mossii DSM
           22836]
          Length = 617

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 177/624 (28%), Positives = 283/624 (45%), Gaps = 61/624 (9%)

Query: 1   MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAI 53
           M +        +Y  D I+ L   + +++RP MYIG     S    G++ ++ EVLDN+I
Sbjct: 1   MEEEKIVLPEINYSDDDIKTLDWQEHIRRRPGMYIGKLGDGSSADDGIYVLLKEVLDNSI 60

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE + G+   I V++  DG   V D+GRG+P    K+        + +R++ G K++ K+
Sbjct: 61  DEYMMGFGKNIDVSI-TDGVVKVRDHGRGVPLGKVKD--------VSSRMNTGAKYDSKA 111

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           +K S GL+GVG+  VNALSS+  ++  REG    + +   I             + GT +
Sbjct: 112 FKKSVGLNGVGIKAVNALSSFFLIQSYREGQTTSVEYCRAI-VEKEEAIHPTNEENGTLI 170

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F+P + IF+   F  D ++  L+   FLN+ + I+   K+           K G+   +
Sbjct: 171 EFIPDATIFTGYTFRDDYVESLLKNYVFLNTGLTITYNGKK--------FHSKNGLVDLL 222

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +      +PL       +       I++ +   D Y E    F N      GGTH S  R
Sbjct: 223 NEYMTS-EPLYPIIHMKEAD-----IEVVITHTDQYGEEYYSFVNGQHTTQGGTHQSAFR 276

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            +L+R I  +  K+F            D R G  + +S+K+ +P F SQTK KL S ++ 
Sbjct: 277 ESLSRVIKEFYNKNFDYA---------DIRSGIVAAISVKVEEPVFESQTKTKLGSKDMG 327

Query: 354 S---VVESFVNDGLSAWLEEHPLEA--------KIIVKKVLDASMVRDAARRARDLTRRK 402
                V+ F+ D L   L+ +  +         K I++   +         +      +K
Sbjct: 328 PGGPSVQKFIGDFLKKELDNYLHKHADTSEALLKKILESEKE-RKAIAGVTKLARERAKK 386

Query: 403 GVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
             L             D    +  ++ +F+ EGDSA GS  + R+   QA+  LRGK LN
Sbjct: 387 ANLHNKKLRDCRIHYNDTKGDNLDETSIFITEGDSASGSITKSRNPNLQAVFSLRGKPLN 446

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
                   +  ++E   L  AL    G     ++ LRY+KIII TDAD DG HIR LLLT
Sbjct: 447 SFGLTKKIVYENEEFNLLQAALNIEDG-----LDGLRYNKIIIATDADTDGMHIRLLLLT 501

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF +  P LI    +YI++ PL+ +   K   Y   EE   + +     + EI  F    
Sbjct: 502 FFLQFFPDLIKKNHVYILQTPLFRVRNKKETIYCYTEEERLNAIKKLGSNPEITRF-KGL 560

Query: 580 GVISKNDLRNFIDDALKIDKLIKD 603
           G IS ++  +FI   +++D++   
Sbjct: 561 GEISPDEFVHFIGKDIRLDRVSMR 584


>gi|51987930|dbj|BAD44725.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 390

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 227/393 (57%), Positives = 298/393 (75%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           SQE+GTLITALG GIG+D ++I+KLRYH IIIM
Sbjct: 358 SQEVGTLITALGCGIGRDEYNIDKLRYHNIIIM 390


>gi|35210341|dbj|BAC92682.1| gyrase B subunit [Alicyclobacillus herbarius]
          Length = 389

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 195/393 (49%), Positives = 275/393 (69%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS WL++ + R+G ++   +  G+    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEWLRVEVHRDGKVHVQEYERGVPLYDLKVVG-TTDHTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V+F P  +IF+    F  D LQ RLREL+FLN+ ++I   D+R  + R       GG+
Sbjct: 60  TIVSFRPDPEIFTETTEFQSDVLQGRLRELAFLNAGLEIVFNDEREGKSRTYCY--SGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K+ L   P+ ++G RD++S+++A+++NDGY   +  F NNI   +GG+H 
Sbjct: 118 AEFVLFLNKSKEVLHPDPVFVKGIRDDVSVEIALQYNDGYAATLYSFANNIHTHEGGSHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ALTR I  Y  K    K+++ ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 AGFKTALTRVINDYARKMNLLKENESNLTGDDVREGLTAIVSVKVPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +V+    D   A+LE++P  A+ IV K + A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 238 SEVRGIVDGLFADKFYAFLEQNPSVARKIVDKSVTAARAREAARKARELTRRKSALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRNFQAILPLRGKIINVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI ++ITA+GTGIG D FD++K RYHKI+I
Sbjct: 358 SNTEIRSIITAIGTGIG-DDFDLSKARYHKIVI 389


>gi|88824753|gb|ABD52422.1| gyrase B [Escherichia coli]
          Length = 392

 Score =  353 bits (906), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 231/395 (58%), Positives = 292/395 (73%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNA S  L+L I+REG I+   + +G+   PL VTG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNAPSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+A+TR + +Y++K   SKK K S  G+  REG  +V+S+K PBP FSSQ K KLVS
Sbjct: 178 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGEHAREGLIAVVSVKXPBPXFSSQXKXKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE   N  L  +L E+P + KI+V K++ A+  R+AARRAR++TRRKG LD+A 
Sbjct: 238 SEVKSXVEQXXNXLLXEYLXENPTDXKIVVGKIIXAARAREAARRAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           SSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 392


>gi|317420208|emb|CBW30261.1| gyrase B subunit [Pseudoalteromonas undina]
          Length = 392

 Score =  353 bits (906), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 235/394 (59%), Positives = 304/394 (77%), Gaps = 6/394 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  LKL I+REG +YE  +  G+ D PL   G +   TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVPDAPLAAIGDSE-TTGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI AF
Sbjct: 60  LRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIRAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           V YL+R+K P+ +        R+   IS++++M+WND + EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 VEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDAFQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 GFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + +  + +L E+P++AKI+V K++DA+  R+AAR+AR++TRRKG +D+A
Sbjct: 239 SSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP + EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQXELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLITALG GIG+D ++  KLRYH+III
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPEKLRYHRIII 392


>gi|189460239|ref|ZP_03009024.1| hypothetical protein BACCOP_00876 [Bacteroides coprocola DSM 17136]
 gi|189433100|gb|EDV02085.1| hypothetical protein BACCOP_00876 [Bacteroides coprocola DSM 17136]
          Length = 644

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 181/686 (26%), Positives = 287/686 (41%), Gaps = 88/686 (12%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDN 51
           M +          SY  ++I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN
Sbjct: 1   MEEEYNEQIANPVSYTEENIRHLSDMEHVRTRPGMYIGRLGDGSQAEDGIYVLLKEVVDN 60

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
            IDE   G    I + +  +   +V D GRGIP         S  + + + L+ GGK++ 
Sbjct: 61  CIDEFKMGAGKRIEIQMEDNLRVSVRDYGRGIPLG-------SLVDAV-SMLNTGGKYDT 112

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           K++K S GL+GVG   VNALSS    R  R+G + E  F  G L +    T S   + GT
Sbjct: 113 KAFKKSVGLNGVGAKAVNALSSRFIARSVRDGQMREAVFAKGELISD--TTQSTEEENGT 170

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P + +F    F  + ++  LR  ++LN+ + I     R           + G+E 
Sbjct: 171 YIFFEPDNTLFLNYHFRPEYIETMLRNYTYLNTGLSIYYNGHRIVS--------RNGLED 222

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            ++     +       + ++       I++A   +  Y E    F N      GGTH S 
Sbjct: 223 LLNDNMTSQGLY--PIVHLKDED----IEIAFTHSPQYGEEYYSFVNGQHTTQGGTHQSA 276

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +  + R I  +  K+         +   D R G  + ++I + +P F SQTK KL S  
Sbjct: 277 FKEHIARTIKEFYGKN---------MEFQDIRNGLVAAIAINVIEPTFESQTKIKLGSLT 327

Query: 352 VRS--------------VVESFVNDGLSA------------------WLEEHPLEAKIIV 379
           +                 V  F+ D +                     ++E   E K I 
Sbjct: 328 MAPEKDSDGNPYPLSGISVNKFIGDFIKENVDNYLHKHPDVADVLLQKIQESEKERKAIA 387

Query: 380 KKVLDAS-MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
                A    + A    R L   +  L+     G   D       +S +F+ EGDSA GS
Sbjct: 388 GVTKIARERAKKANLHNRKLRDCRIHLNDL--KGAKKDEENDPRLESSIFITEGDSASGS 445

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
             + R    QA+  LRGK LN        +  ++E   L  AL    G     ++ LRY+
Sbjct: 446 ITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALNIEDG-----LDGLRYN 500

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS----LQYVK 554
           K+I+ TDADVDG HIR L++TFF +  P LI  G +YI++ PL+ +   K       Y  
Sbjct: 501 KVIVATDADVDGMHIRLLMITFFLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETIYCY 560

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
            +E     +     + EI  F    G IS ++ RNFI   ++++ +      +  K  +E
Sbjct: 561 TDEERIAAIEKLGPNPEITRF-KGLGEISPDEFRNFIGKDMRLELVSLR-KTDAVKELLE 618

Query: 615 QAVISGVFNCESDQEINVSLASKLAN 640
             +       ++    N+ +   L N
Sbjct: 619 FYMGKNTMERQNFIINNLVIEEDLLN 644


>gi|225419992|ref|ZP_03762295.1| hypothetical protein CLOSTASPAR_06333 [Clostridium asparagiforme
           DSM 15981]
 gi|225041384|gb|EEG51630.1| hypothetical protein CLOSTASPAR_06333 [Clostridium asparagiforme
           DSM 15981]
          Length = 422

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 139/408 (34%), Positives = 209/408 (51%), Gaps = 75/408 (18%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            +  + Y A+ IQIL+GL+AV+KRP+MYIG+T    GLHH++ E++DNA+DE+L G+   
Sbjct: 16  TMVKNEYRAEQIQILEGLEAVRKRPAMYIGNTSSA-GLHHLVCEIVDNAVDEALAGHCSA 74

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           ++VTLN DGS T++DNGRGIP  + K+ G+SA +V+ T LHAGGKF+  +YKVSGGLHGV
Sbjct: 75  VSVTLNRDGSVTITDNGRGIPVGIQKKTGLSALQVVFTVLHAGGKFDSSNYKVSGGLHGV 134

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------DNPLVVTGSAGNDT 169
           G SVVNALS WL++ ++R+G  ++ S+  G+                 PL         T
Sbjct: 135 GASVVNALSLWLRVEVRRDGGTWKQSYSRGVPDGAVTKEEAVRGCATGPLARQDDPIPLT 194

Query: 170 -----------------------------GTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
                                        GT VTFLP  +IF    F Y+ L+ R+RE +
Sbjct: 195 RQDDPVPSARNEAPFSPARQGALDTVSVSGTTVTFLPDPEIFRDPVFQYEVLKKRMRETA 254

Query: 201 FLNSSVQISLIDKRSPEPR-------------------------------EITMFYKGGI 229
           FL   + ++L D R+                                   +     + G+
Sbjct: 255 FLTKGLSLTLTDLRADCKHGSNTAATPDATTADAPKSPESSNLPQPTLPRQDHFLCEKGL 314

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           E FV++L+R   PL    I       +I ++ A++   GY + +  F NNI   +GG+H+
Sbjct: 315 EDFVNWLNRDASPLYSEIICGGADSGDIQVEFAIQHTAGYDQRLYSFVNNISTPEGGSHV 374

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           +G  SAL R +          K+    +  ++  EG T+V+S++M DP
Sbjct: 375 TGFHSALVRALNHCARNLKLLKESAPPLCREELTEGLTAVISVRMQDP 422


>gi|35210345|dbj|BAC92684.1| gyrase B subunit [Alicyclobacillus disulfidooxidans]
          Length = 390

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 199/393 (50%), Positives = 280/393 (71%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALSSW+++ + R+GN+YE  +  G+    L + G   N TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSSWMRVEVHRDGNVYEQEYERGVPMYDLRIIG-TTNHTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V+F P S+IF+    F+ D LQ+RLREL+FLN+ ++I   D+R  E +     Y GG+
Sbjct: 60  TTVSFRPDSEIFTETTVFDADILQNRLRELAFLNAGLEIVFTDERI-EGKTNVYHYSGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFV YL++ +  L + P+ + G +D +++++A+++NDGY   +  F NNI   +GGTH 
Sbjct: 119 AAFVEYLNKSRDVLHEQPVFVAGKKDEVTVEIALQYNDGYSTTLFSFANNINTHEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  K+   K+   ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARKANAIKEADNNLSGDDVREGLTAIVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES   + L  +L+EHP  AK I++K + A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 239 SEVRGIVESLFGEKLQTFLDEHPSVAKKILEKSIMAARAREAARKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS RDP   EL++VEGDSAGGSAK GR R  QAILP+RGKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSRDPSICELYIVEGDSAGGSAKSGRDRNFQAILPIRGKIINVEKARLDKVL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++E+ ++ITA GTGI  + FDI+K RYHK++I
Sbjct: 359 SNEEVRSIITASGTGI-AEEFDISKARYHKVVI 390


>gi|308153058|dbj|BAJ22118.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 391

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 195/393 (49%), Positives = 277/393 (70%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF     ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVIHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  +    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  L  +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ ++ITALGTGIG+D F++ K RYHK++I
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVVI 391


>gi|33590346|gb|AAQ22713.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. akhurstii]
          Length = 383

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 227/386 (58%), Positives = 296/386 (76%), Gaps = 4/386 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGT 59

Query: 172 EVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GGI+
Sbjct: 60  RVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A L
Sbjct: 238 EVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLR 496
           SQE+ TLITALG GIG+D ++ +KLR
Sbjct: 358 SQEVATLITALGCGIGRDEYNPDKLR 383


>gi|31071471|dbj|BAC76784.1| DNA gyrase B subunit [Anabaena planctonica]
          Length = 396

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 182/393 (46%), Positives = 264/393 (67%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN++DE+L GY   + V +N DGS TV+D+GRGIPTD+H + G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSVDEALAGYCTHVEVDINADGSVTVTDDGRGIPTDIHPKTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVG+SVVNALS ++++ + R+  I+   +      
Sbjct: 62  ETVLTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEFVEVTVWRDHKIHTQRYERSFPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             LV      + TGT +TF P + IF+   +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELVAKPYKEDRTGTSITFKPDTQIFTTSIEFDYITLSGRLRELAYLNAGVKITFTDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S  P+  T  YKGG + +++Y++R K+PL +  I +QG R+N+ ++++++W  D Y
Sbjct: 182 ELLKSDIPKIETYEYKGGFKEYIAYMNRDKQPLHEEIIYVQGERNNVQVEVSLQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G+  REG T+V
Sbjct: 242 TDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNATARKRNKIKENESNLSGEHVREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK +L ++EVR +V+SFV + L+ +L+ HP  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTRLGNTEVRGIVDSFVGEVLTEYLDFHPAIADAILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|33590314|gb|AAQ22697.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 383

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 224/386 (58%), Positives = 295/386 (76%), Gaps = 4/386 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL + G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGETE-QT 59

Query: 170 GTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GG
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 IKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINK 494
           LSSQE+ TLITALG GIG+D ++ +K
Sbjct: 358 LSSQEVATLITALGCGIGRDEYNPDK 383


>gi|307564794|ref|ZP_07627322.1| DNA topoisomerase IV subunit B [Prevotella amnii CRIS 21A-A]
 gi|307346516|gb|EFN91825.1| DNA topoisomerase IV subunit B [Prevotella amnii CRIS 21A-A]
          Length = 646

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 155/567 (27%), Positives = 255/567 (44%), Gaps = 58/567 (10%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDE 55
           M +  +N   Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE
Sbjct: 1   MVEETKNIVQYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDE 60

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
                 + I + +  +   TV D GRGIP        I A  +    L+ GGK++ K++K
Sbjct: 61  FKMEAGNRIEIDIEDNLRVTVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFK 112

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            S GL+GVGV  VNALSS  +++  R+G +  + F  G L +    T  + ++ GT + F
Sbjct: 113 KSVGLNGVGVKAVNALSSKFEVKSFRDGKVRHLCFEKGCLKDD--KTSKSNDENGTFIYF 170

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P + +F    F  + ++  LR  ++LN+ + I    +R             G++  ++ 
Sbjct: 171 EPDNTLFKNYKFLDEIVETMLRNYTYLNTGLTIMYNGRRILSRH--------GLKDLLTD 222

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
                   +   + ++G      I++A    + Y E    F N      GGTH S  +  
Sbjct: 223 NMTV--DPLYPIVHMKGED----IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSAFKEH 276

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS- 354
           + + I  Y  K              D R G  + ++I + +P F SQTK KL S+ +   
Sbjct: 277 IAKTIKEYYGKYEYI----------DIRNGLVAAIAINVEEPIFESQTKVKLGSTLMEPN 326

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS--------MVRDAARRARDLTRRKGV 404
              +  ++ D +   ++ +    K     +L+                 +      +K  
Sbjct: 327 GDTINKYIGDFIKLNVDNYLHIHKEDCADILENKIKETERERKAMAGVTKLARERAKKAN 386

Query: 405 LDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           L            +D      ++S +F+ EGDSA GS  + R    QA+  LRGK LN  
Sbjct: 387 LHNKKLRDCRIHFSDIKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSF 446

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
                 +  ++E   L  AL    G     ++ LRY+KII+ TDADVDG HIR L++TFF
Sbjct: 447 GLTKKVVYENEEFNLLQAALDIEEG-----LDTLRYNKIIVATDADVDGMHIRLLIITFF 501

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGK 548
            +  P LI  G +Y+++ PL+ I   +
Sbjct: 502 LQFFPELIKKGHVYVLQTPLFRIRNRR 528


>gi|157060406|gb|ABV03209.1| GyrB [Chlamydia trachomatis]
 gi|157060408|gb|ABV03210.1| GyrB [Chlamydia trachomatis]
 gi|157060412|gb|ABV03212.1| GyrB [Chlamydia trachomatis]
 gi|157060414|gb|ABV03213.1| GyrB [Chlamydia trachomatis]
 gi|157060416|gb|ABV03214.1| GyrB [Chlamydia trachomatis]
 gi|157060418|gb|ABV03215.1| GyrB [Chlamydia trachomatis]
 gi|157060420|gb|ABV03216.1| GyrB [Chlamydia trachomatis]
 gi|157060422|gb|ABV03217.1| GyrB [Chlamydia trachomatis]
          Length = 392

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 164/401 (40%), Positives = 236/401 (58%), Gaps = 15/401 (3%)

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K
Sbjct: 2   ARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQK 61

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +QEIG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +
Sbjct: 62  VFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSA 121

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI N  +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L
Sbjct: 122 LIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEAL 181

Query: 588 RNFIDDALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             F++  L+++  I            F++              E      S L +     
Sbjct: 182 ETFVNLILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH---- 237

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
            E+ E +   +  ++  +++     V E+   +          Y     + I  +     
Sbjct: 238 -EEKEAAIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP- 295

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
                           ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV
Sbjct: 296 ----KISPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRV 351

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
            + DA +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 352 SLKDAVEADHIFTMLMGEEVPPRREFIKSHALSIRMNNLDI 392


>gi|262285791|gb|ACY41221.1| DNA gyrase B [Pseudorhodobacter sp. HDW-19]
          Length = 403

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 245/399 (61%), Positives = 305/399 (76%), Gaps = 6/399 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS WL+LR+   G  Y   F +G     +   G A N+ 
Sbjct: 5   DGNAYKVSGGLHGVGVSVVNALSDWLELRVWHNGMEYFARFEDGECVEHVREVGPAPNER 64

Query: 170 GTEVTFLPSSDI------FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           GTEV F+ SS +      FS  ++++ TL++RLREL+FLNS  +I +ID+R  EP    +
Sbjct: 65  GTEVRFMASSKVNRPDGTFSDLEYSFKTLENRLRELAFLNSGARIIVIDERPAEPLHSEL 124

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
           FY+GG+  +V YLDR K  ++  PI I G R+ I +++AM WND YHENVL FTNNIPQ+
Sbjct: 125 FYEGGVREYVKYLDRSKTSILPEPIYIIGERNGIMVEIAMWWNDSYHENVLPFTNNIPQR 184

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+GLR ALTR I +Y + +  +KK+K    GDD REG T VLS+K PDP+FSSQT
Sbjct: 185 DGGTHLAGLRGALTRTINNYAQSTGIAKKEKIDFTGDDAREGLTCVLSVKAPDPKFSSQT 244

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR  VE  VN+ L+ W EE+P  AKIIV K+++A+  R+AAR+ARDLTRRK 
Sbjct: 245 KDKLVSSEVRPAVEGMVNEKLAEWFEENPANAKIIVGKIIEAAFAREAARKARDLTRRKS 304

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LDI++LPGKLADC E+D  K+ELFLVEGDSAGGSAKQGRSR+NQA+LPL+GKILNVERA
Sbjct: 305 PLDISNLPGKLADCQEKDASKAELFLVEGDSAGGSAKQGRSRQNQAVLPLKGKILNVERA 364

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           RFD+MLSSQEIGTLITA+GTGIG+D F++ KLRYHKIII
Sbjct: 365 RFDRMLSSQEIGTLITAMGTGIGRDEFNLAKLRYHKIII 403


>gi|157073789|dbj|BAF79893.1| gyrase B [Methylobacterium fujisawaense]
          Length = 399

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 244/399 (61%), Positives = 305/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALSSWL+LRI R    + M F +G    PL V G      G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVVGPGNGRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV+FLPS++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y+GGIE
Sbjct: 61  TEVSFLPSTETFTMIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYEGGIE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M SP+ +   RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPIDGMTSPVVVSSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQ+T Y E S  +KK+K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+ R+   RKG LDIA
Sbjct: 241 SSEVRPAVENVLNEGLSTWLEENPSQARSVMAKVVLAASAREAARQGRETVTRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+  KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|313574603|emb|CBX26154.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574609|emb|CBX26157.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574611|emb|CBX26158.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574613|emb|CBX26159.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574615|emb|CBX26160.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574617|emb|CBX26161.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574619|emb|CBX26162.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 274/392 (69%), Positives = 330/392 (84%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+ +P+ I G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRSKKPLVNTPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|83017290|dbj|BAE53563.1| DNA gyrase B [Microbulbifer sp. MBIC06108]
          Length = 389

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 226/392 (57%), Positives = 294/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS+ LK+ I+R+G I+E ++ +G+   PL V G   + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSAELKMTIRRDGRIHEQNYRDGVPQAPLAVVGET-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y GG+ 
Sbjct: 60  TTVHFKPSPDTFSNIEFHFDVLAKRLRELSFLNSGVRILLKDERSGKE--EIYEYGGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+  K P+ +         D I +++A++WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNHAKTPINKVLHFQSQRDDGIGVEVALQWNDSFQENIYCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+EK    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNNYIEKEGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGQHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  FD +K+RYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFDADKIRYHSIII 389


>gi|88824759|gb|ABD52425.1| gyrase B [Aeromonas hydrophila]
          Length = 383

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 234/386 (60%), Positives = 295/386 (76%), Gaps = 3/386 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKIII 502
           LITALG GIG+D ++ +KLRYH III
Sbjct: 358 LITALGCGIGRDEYNPDKLRYHNIII 383


>gi|3985988|dbj|BAA34870.1| DNA gyrase subunit B protein [Nitrosomonas sp. JL21]
          Length = 389

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 234/392 (59%), Positives = 299/392 (76%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS WLKL I+R G ++ M F  G+   PL V G +G   G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLKLTIRRNGKVHHMEFRMGVPMKPLEVIGESGRH-G 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV FL S +IF   +++YD    RLRELSFLN+ V+I LID+R+ +       + GGI+
Sbjct: 60  TEVHFLASQEIFGQVEYHYDIFAKRLRELSFLNNGVKIHLIDQRTGKE--EKFAFTGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++R K  L  +     G +DNI++++AM+WND Y E VLCFTNNIPQKDGGTHL+
Sbjct: 118 NFVEYINRSKTVLHPAIFYTTGVKDNITVEVAMQWNDSYTEQVLCFTNNIPQKDGGTHLT 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR + +Y+EK+  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSS
Sbjct: 178 GLRAAMTRTLNNYIEKNELAKKAKVETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVE  V   LS +L E+P++AK I  K+++A+  R+AAR+AR+LTRRKGVLD   L
Sbjct: 238 EVRPVVEEVVTQKLSEFLLENPIDAKTICNKIIEAARAREAARKARELTRRKGVLDSMGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E++P+  EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++S
Sbjct: 298 PGKLADCQEKNPELCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEI +LITALGTGIG+D ++ +KLRYH+III
Sbjct: 358 SQEIISLITALGTGIGKDEYNPDKLRYHRIII 389


>gi|41387078|gb|AAS01493.1| GyrB [Bacillus sp. FO-080]
          Length = 392

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 191/395 (48%), Positives = 277/395 (70%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + R+G I+   +  G+    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P S+IF+    + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           S+ E+ T+ITA+GT IG D F I K RYHK+IIMT
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FAIEKARYHKVIIMT 392


>gi|157073791|dbj|BAF79894.1| gyrase B [Methylobacterium hispanicum]
 gi|157073829|dbj|BAF79913.1| gyrase B [Methylobacterium hispanicum]
          Length = 399

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 246/399 (61%), Positives = 305/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI R    + M F +G    PL V G      G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIWRNDQEHAMEFGHGEAKAPLKVVGPGNGRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y GGIE
Sbjct: 61  TEVTFLPSTETFTMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYDGGIE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M  P+ ++  RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPIEGMSKPVVVRSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQIT Y E S  +K++K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQITGYAESSGVAKREKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENVLNEGLSTWLEENPSQAKALMGKVVLAASAREAARKARETVTRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|317420210|emb|CBW30262.1| gyrase B subunit [Pseudoalteromonas peptidolytica]
          Length = 388

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 230/388 (59%), Positives = 302/388 (77%), Gaps = 3/388 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+R+G +++  +  G+ D PL + G A   TGTE+ 
Sbjct: 2   KVSGGLHGVGVSVVNALSEKLQLTIRRDGKVHQQKYTMGVPDAPLGIIGEAE-TTGTELR 60

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ FS  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV 
Sbjct: 61  FWPSAETFSDTNFHYDILAKRLRELSFLNSGVSIILSDER-EENKQDHFKYEGGIQAFVE 119

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           YL+R K P+ QS       R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 120 YLNRKKTPVHQSVFHFSTEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 179

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 180 AALTRTLNTYMEKEGFNKKHKTNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 239

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VE  + + L+ +L E+P +AK +V K++DA+  R+AAR+AR++TRRKGV+D+A L GK
Sbjct: 240 GAVEQMMAEKLTEFLLENPGDAKTVVNKIVDAARAREAARKAREMTRRKGVMDLAGLRGK 299

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC ERDP   EL++VEGDSAGG AKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 300 LADCQERDPALXELYIVEGDSAGGXAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 359

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKII 501
           + TLITALG GIG+D ++  KLRYH+II
Sbjct: 360 VATLITALGCGIGRDEYNPEKLRYHRII 387


>gi|126035288|gb|ABN72397.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 385

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 234/388 (60%), Positives = 299/388 (77%), Gaps = 4/388 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVR 59

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV
Sbjct: 60  FWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+++K P+  +       +D I I++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 118 EYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGK
Sbjct: 238 SAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 298 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 357

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKII 501
           + TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 VATLITALGCGIGRDEYNPDKLRYHSII 385


>gi|157060402|gb|ABV03207.1| GyrB [Chlamydia trachomatis]
 gi|157060404|gb|ABV03208.1| GyrB [Chlamydia trachomatis]
 gi|157060410|gb|ABV03211.1| GyrB [Chlamydia trachomatis]
 gi|157060426|gb|ABV03219.1| GyrB [Chlamydia trachomatis]
          Length = 393

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 164/401 (40%), Positives = 236/401 (58%), Gaps = 15/401 (3%)

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKL DC E+DP+K E+++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR  K
Sbjct: 3   ARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQK 62

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +QEIG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +
Sbjct: 63  VFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSA 122

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI N  +YI +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L
Sbjct: 123 LIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEAL 182

Query: 588 RNFIDDALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
             F++  L+++  I            F++              E      S L +     
Sbjct: 183 ETFVNLILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH---- 238

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
            E+ E +   +  ++  +++     V E+   +          Y     + I  +     
Sbjct: 239 -EEKEAAIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP- 296

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
                           ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV
Sbjct: 297 ----KISPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRV 352

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
            + DA +AD +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 353 SLKDAVEADHIFTMLMGEEVPPRREFIKSHALSIRMNNLDI 393


>gi|85541245|gb|ABC70863.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 385

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 230/388 (59%), Positives = 296/388 (76%), Gaps = 4/388 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVR 59

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV
Sbjct: 60  FWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 118 EYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGK
Sbjct: 238 SAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC ERDP  SEL+LVEGDSAGG AKQGR+R+N AILPL+GKILNVE+ARFDKMLS QE
Sbjct: 298 LADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVEKARFDKMLSFQE 357

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKII 501
           + TLITALG GIG+D ++ +KLRYH II
Sbjct: 358 VATLITALGCGIGRDEYNPDKLRYHSII 385


>gi|145309499|dbj|BAF56647.1| DNA gyrase subunit B [Alicyclobacillus contaminans]
 gi|145309501|dbj|BAF56648.1| DNA gyrase subunit B [Alicyclobacillus contaminans]
          Length = 389

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 207/393 (52%), Positives = 278/393 (70%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS WLK+ + R+G IY   +  G +   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEWLKVVVYRDGKIYTQEYERGNVLYDLKVIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T VTF P  +IF+    F+ D LQ RLREL+FLN+ ++I   D+R  +   +T  Y GG+
Sbjct: 60  TTVTFKPDPEIFTETTEFSSDILQSRLRELAFLNAGLEIVYEDEREDKQ--VTYCYSGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            AFV YL++ K  L  +P+ + G RD++++++A+++NDGY + +  F NNI   +GG+H 
Sbjct: 118 AAFVEYLNKSKDVLHPTPVYVTGVRDDVTVEIALQYNDGYSQTLFSFANNIHTHEGGSHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K ++  + GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 SGFKSALTRVINDYARKNNLVKDNEDKLTGDDVREGLTAIVSVKVPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES   D L  + +E+P  A+ IV+K + A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 238 SEVRGIVESLFADKLQIFFDENPSVARKIVEKSVTAARAREAARKARELTRRKNALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL+LVEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLADCSSKDASVSELYLVEGDSAGGSAKQGRDRNFQAILPLRGKIINVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+QEI  +ITALGTGIG D FDI K RYHK++I
Sbjct: 358 SNQEIRAIITALGTGIG-DDFDITKARYHKVVI 389


>gi|126035200|gb|ABN72353.1| gyrase B subunit [Escherichia coli]
          Length = 385

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 233/388 (60%), Positives = 298/388 (76%), Gaps = 4/388 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 238 KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           E+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYHNI 385


>gi|313574637|emb|CBX26171.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574639|emb|CBX26172.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574641|emb|CBX26173.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574643|emb|CBX26174.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574645|emb|CBX26175.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574647|emb|CBX26176.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574649|emb|CBX26177.1| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
          Length = 392

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 273/392 (69%), Positives = 328/392 (83%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  PI I   +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPIAIHSEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY + S   K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP EAKI++ KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSEAKILIGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|298372413|ref|ZP_06982403.1| DNA gyrase subunit B [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275317|gb|EFI16868.1| DNA gyrase subunit B [Bacteroidetes oral taxon 274 str. F0058]
          Length = 623

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 181/629 (28%), Positives = 272/629 (43%), Gaps = 65/629 (10%)

Query: 1   MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNA 52
           M+++     Q+       I  L+GL  V+KRP MYIG     S    G++ +I EV+DN+
Sbjct: 1   MTEDSNLLGQSGENSEVEIVHLEGLKHVRKRPGMYIGKLGDGSSPDDGIYVLIKEVIDNS 60

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE   G+   I +TL  D +  V D GRGI     +E  I A  V    ++  GK+   
Sbjct: 61  IDEFRNGFGATIDITL-EDNTVRVRDYGRGI----SQESMIKAVSV----MNTSGKYTSS 111

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            YK S GL+GVG   VNALS    +R  REG +    F  G+L        +    +GTE
Sbjct: 112 GYKKSVGLNGVGTKAVNALSERFIIRSYREGTVKSAVFEKGVLVEE-TPAEATAEKSGTE 170

Query: 173 VTFLPSS--DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           V F P +  DIF    +  + +   ++   +LN  + I              M  + G+ 
Sbjct: 171 VIFKPDNDADIFGNFAYREEFVVSMIKNYCYLNMGLTIDFNG--------SKMTSQNGLL 222

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +          +   + ++G      I++     + Y E    F N      GGTH S
Sbjct: 223 DLLDENIT--SDPLYPIVHLKGED----IEIVFTHTNQYGEEYYSFVNGQHTIQGGTHQS 276

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
             R    + I  +  K+             D R G  + +S+ + DP F SQTK KL S+
Sbjct: 277 AFREYFGKSIRDFYGKNMEYA---------DIRMGLVAAISVSLQDPVFESQTKIKLGST 327

Query: 351 EVRS------VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR--- 401
           +V         V+ F+ D +   ++ +      + + +       +  R+A     +   
Sbjct: 328 KVDPNDPNSMTVQKFIGDFVVKEIDRYLHINHDVAEILQKKIQESEKERKAIASVTKVAR 387

Query: 402 KGVLDIASLPGKLADCS-------ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           K    ++    KL DC              + LF+ EGDSA GS  + R    QA+  LR
Sbjct: 388 KNAQKVSLHNKKLRDCRIHFNDTKSDSKNDTCLFITEGDSASGSITKTRDPNLQAVFSLR 447

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK LN        + ++ E+  L  AL    G     I  LRY+KIII TDAD DG HIR
Sbjct: 448 GKSLNSFNKTKQIVYTNVELNLLQAALNVEDG-----IEGLRYNKIIIATDADPDGMHIR 502

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           +LL+TFF +  P LI  G +YI++ PL+ +   K   Y   EE  +  L     + EI  
Sbjct: 503 SLLMTFFLQFFPDLIKKGHIYILQTPLFRVRNKKETLYCYSEEERKQALSKLGANPEITR 562

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           F    G I  ++ + FI   +++DK+   
Sbjct: 563 F-KGLGEIDPDEFKTFIGKNMRLDKVTLR 590



 Score = 41.5 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 24/120 (20%)

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLW 751
           I    I      +  +    + +           +  +G     + R+KGLGE++  +  
Sbjct: 517 IKKGHIYILQTPLFRVRNKKETLYCYSEEERKQALSKLG-ANPEITRFKGLGEIDPDEFK 575

Query: 752 ETT-----LNPDTRSLLRVKI--TDASQADDLFSRL---MGDEVEPRREFIQENSLPSAL 801
             T     +      L +V +   DA         L   MG   + R++FI  N L   +
Sbjct: 576 --TFIGKNM-----RLDKVTLRKEDAVS-----DMLKFYMGKNTQERQDFIVNN-LNVEV 622


>gi|157073813|dbj|BAF79905.1| gyrase B [Methylobacterium gregans]
 gi|157073825|dbj|BAF79911.1| gyrase B [Methylobacterium gregans]
          Length = 399

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 248/399 (62%), Positives = 306/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI R    + M F +G    PL V G      G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIWRNDQEHAMEFGHGEAKAPLKVVGPGNGRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y GGIE
Sbjct: 61  TEVTFLPSTETFTMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYDGGIE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  MQ P+ ++  RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPIEGMQKPVVVRSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQIT Y E S  +KK+K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQITGYAESSGVAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENVLNEGLSTWLEENPSQAKALMGKVVLAASAREAARKARETVTRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|313574625|emb|CBX26165.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574627|emb|CBX26166.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 272/392 (69%), Positives = 328/392 (83%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S   F++ +++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPQTFTMTEYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  PI I   +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPIAIHSEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY + S   K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP EAKI++ KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSEAKILIGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|226428998|gb|ACO55119.1| DNA gyrase [Allochromatium vinosum DSM 180]
 gi|226429000|gb|ACO55120.1| DNA gyrase [Allochromatium minutissimum]
 gi|226429002|gb|ACO55121.1| DNA gyrase [Allochromatium sp. AX1YPE]
 gi|226429006|gb|ACO55123.1| DNA gyrase [Allochromatium vinosum]
 gi|226429008|gb|ACO55124.1| DNA gyrase [Allochromatium vinosum]
          Length = 280

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 153/282 (54%), Positives = 200/282 (70%), Gaps = 3/282 (1%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           M++EV+DN+IDE+L GY   ++VTL+ DGS +V D+GRGIP D+H EE  SAAEVI+T L
Sbjct: 1   MVFEVVDNSIDEALAGYCSTVSVTLHADGSVSVVDDGRGIPVDIHAEENRSAAEVILTVL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L LRI+R G+++E  +  G    PL V G
Sbjct: 61  HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLYLRIRRGGHLHEQEYRLGEPVYPLRVIG 120

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
               +TGTE+ F PS +IFS  DF+YD L  RLRELSFLNS V+I+L D+ S   R    
Sbjct: 121 DTE-ETGTEIRFYPSGEIFSNLDFHYDILAKRLRELSFLNSGVRIALSDEASG--RHDVF 177

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI AFV  L+++K+P+  + +     R +I ++LA++WN+ Y E + C+TN IPQ+
Sbjct: 178 EYEGGIRAFVENLNQNKEPIHPTVVYFSTERQDIGVELAIQWNNSYQETIFCYTNTIPQR 237

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           DGGTHL+GLR+ALTR +  Y+E+    K  K   IGDD REG
Sbjct: 238 DGGTHLAGLRAALTRTLNGYIEREGLDKNQKIRPIGDDAREG 279


>gi|32480585|gb|AAP83858.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 230/394 (58%), Positives = 294/394 (74%), Gaps = 2/394 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL- 59

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                 GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R    
Sbjct: 60  EVSAKRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI +FV +L + K PL  + I + G  + I +D A++W D Y E + CFTNNIPQK
Sbjct: 119 HYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGIVVDAALQWTDAYQETMYCFTNNIPQK 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DG THL+G R+ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQT
Sbjct: 179 DGRTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KEKLVSS+V+  VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKG
Sbjct: 239 KEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERA
Sbjct: 299 VLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           RFD+MLSS E+GTLITALGTGIG+D ++ +KLRY
Sbjct: 359 RFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|32480587|gb|AAP83859.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480589|gb|AAP83860.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480591|gb|AAP83861.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480595|gb|AAP83863.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480605|gb|AAP83868.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 231/394 (58%), Positives = 296/394 (75%), Gaps = 2/394 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL- 59

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                 GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R    
Sbjct: 60  EVSAKRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQK
Sbjct: 119 HYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQK 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KEKLVSS+V+  VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKG
Sbjct: 239 KEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERA
Sbjct: 299 VLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           RFD+MLSS E+GTLITALGTGIG+D ++ +KLRY
Sbjct: 359 RFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|126035212|gb|ABN72359.1| gyrase B subunit [Escherichia coli]
 gi|126035214|gb|ABN72360.1| gyrase B subunit [Escherichia coli]
 gi|126035216|gb|ABN72361.1| gyrase B subunit [Escherichia coli]
          Length = 385

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 233/388 (60%), Positives = 298/388 (76%), Gaps = 4/388 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 238 KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           E+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYHSI 385


>gi|164690661|dbj|BAF98614.1| gyrase B [Sporolactobacillus inulinus]
          Length = 389

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 195/393 (49%), Positives = 270/393 (68%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ + +++ R G++Y   +  G     L + G +   TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTKMWVKVYRNGHVYYQEYHRGKPLADLKIIGDSE-QTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     F+YDTL+ R+REL+FLN +++IS+ D+R  E +  T  Y+GGI
Sbjct: 60  TTTHFEPDPEIFKDTTTFDYDTLRVRVRELAFLNKNIRISIEDRR-EEGKRDTYHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+R K+ + +    ++G +D I +++AM++N G+   +  F NNI   +GGTH 
Sbjct: 119 RSYVEFLNRSKEVIHEPID-LEGEKDGIKVEIAMQYNSGFTGQLYSFANNIHTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G + ALTR I  Y  K+   K    ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 178 YGFKVALTRVINDYARKNQLIKASDPNLTGDDVREGLTAIVSIKHPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR++ ++  ++  S +L E+P  A++IV K L AS  R AA++AR+LTRRK  L+++S
Sbjct: 238 SEVRAITDTLFSEAFSRYLLENPDVARLIVDKGLIASRARTAAKKARELTRRKSSLEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRMFQAILPLRGKILNVEKARLDRIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITALGTGIG D F++ K RYHKIII
Sbjct: 358 SNAEIRAMITALGTGIG-DEFNLEKARYHKIII 389


>gi|82940550|emb|CAJ44283.1| gyrase B protein [Listonella anguillarum]
          Length = 385

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 223/387 (57%), Positives = 298/387 (77%), Gaps = 3/387 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F PS++ F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GG
Sbjct: 60  TGTTLRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFRYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           I+AFV +L+R+K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG 
Sbjct: 119 IKAFVGHLNRNKTPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGA 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 HLAGFRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VES + + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+
Sbjct: 239 VSSEVKSAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDL 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 358

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINK 494
           MLSSQE+ TLITALG GIG+D ++ +K
Sbjct: 359 MLSSQEVATLITALGCGIGRDEYNPDK 385


>gi|208973052|dbj|BAG74369.1| DNA gyrase B [Paenibacillus polymyxa]
          Length = 389

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 207/393 (52%), Positives = 282/393 (71%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVGVSVVNALSS + + +KR+G++YE  +  G     + V G    +TG
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSSKMIVHVKRDGHVYEQEYHRGAPQYDVRVIGDTE-ETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+ TF P   IF+    ++YDTLQ R+REL+FLN  + ISL D+R+      T  Y+GGI
Sbjct: 60  TQTTFYPDEQIFTETTVYDYDTLQTRIRELAFLNKGIAISLTDERTG--ASDTFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             +V +L++ ++ L + PI ++GSRD I +++A+++ND Y EN+  F NNI   +GGTH 
Sbjct: 118 SEYVQFLNQKREALHEQPIYVEGSRDMIQVEVALQYNDSYTENIYSFANNINTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 SGFKSALTRIINDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES   + L  +LEE+P  ++ +V K L A+  R+AAR+AR+LTRRK  L+I+S
Sbjct: 238 SEVRGIVESLFAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SS EI +++TA+GTGIG D FDI+K RYHK+II
Sbjct: 358 SSDEIRSMVTAMGTGIG-DDFDISKARYHKVII 389


>gi|308153068|dbj|BAJ22123.1| DNA gyrase subunit B [Bacillus sp.]
          Length = 391

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 197/393 (50%), Positives = 277/393 (70%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+   +  GI  + L V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQVYNRGIPVSDLEVIGETDH-TG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF+    + YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFTETTEYEYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++NDGY  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDGYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  L  ++ E+P  A+ IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSAALETFMLENPDAARKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ ++ITALGTGIG+D F++ K RYHK++I
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVVI 391


>gi|190148836|gb|ACE63393.1| DNA gyrase B subunit [Pseudonocardia aurantiaca]
          Length = 413

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 190/415 (45%), Positives = 264/415 (63%), Gaps = 18/415 (4%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SY VSGGLHGVGVSVVNALS+ L + I  +G ++   +   +   PL   G    
Sbjct: 1   KFDSDSYAVSGGLHGVGVSVVNALSTALDVEIHTDGFVWRQHYARSVP-GPLRK-GEPTK 58

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------- 216
            TG+ VTF P  DIF    FN +T++ RL+E++FLN  + I L D+R+            
Sbjct: 59  RTGSTVTFWPDGDIFETLTFNIETIRRRLQEMAFLNKGLTIILCDERNGHPAEEEEPDAE 118

Query: 217 ----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               + +E T  Y  G+E FV++L++ K P+ +  +   G  +  ++++AM+WN GY E+
Sbjct: 119 GYVAKVKEYTFCYPNGLEDFVAHLNKSKDPIHKKLVSYTGEGEGHAVEVAMQWNSGYTES 178

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y       K+   ++ G+D REG  +++S+
Sbjct: 179 VYTFANTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPALSGEDIREGLAAIVSV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK IV K + ++  R AA
Sbjct: 239 KVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEAKTIVNKAVSSAQARMAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAILP
Sbjct: 299 RKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYVVEGDSAGGSAKSGRDSMYQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           +RGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI++MTDAD
Sbjct: 359 IRGKIINVEKARLDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHKIVLMTDAD 412


>gi|83854003|gb|ABC47939.1| gyrase B subunit [Vibrio parahaemolyticus]
 gi|83854011|gb|ABC47943.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 386

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 230/388 (59%), Positives = 304/388 (78%), Gaps = 3/388 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 239 VKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHK 499
           QE+ TLITALG GIG+D ++ +KLRYH 
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRYHN 386


>gi|145642081|ref|ZP_01797652.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021]
 gi|145273261|gb|EDK13136.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.4-21]
          Length = 430

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 153/426 (35%), Positives = 235/426 (55%), Gaps = 14/426 (3%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A  I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V+DNGRG+P D+H  EG+S  EVI+T+LHAGGKF+ K+Y+ +GGLHGVG+S
Sbjct: 58  ILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQ 185
           VVNALS  + +++KR G +Y+++F NG     L V G+ G   TGT V F P+   F   
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTSVHFKPNPKYFDNA 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  +DK +         Y+ G+  ++       + L +
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFLDKVNNTQ--DIWLYEDGLSDYLIEAVNGFETLPE 235

Query: 246 SPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            P     +G+ + +S    +   +G       + N IP   GGTH++GLR  L   I  +
Sbjct: 236 KPFVGEFKGTNEAVSW-ALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREF 294

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            E      +    +  DD  E  + +LS+KM D +F+ QTKE+L S +    V   + D 
Sbjct: 295 CEFRNLLPRG-VKLTADDIWERCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDA 353

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            S WL ++  +A+ + +  + ++       RA     RK ++   +LPGKLADC  +D +
Sbjct: 354 FSLWLNQNVQDAEKLAEIAISSAQ---RRLRAAKKVVRKKLVSGPALPGKLADCGSQDLE 410

Query: 424 KSELFL 429
           K+ELF 
Sbjct: 411 KTELFF 416


>gi|11078717|dbj|BAB17363.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 388

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 224/391 (57%), Positives = 296/391 (75%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ 
Sbjct: 60  TQIHFKPSAETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV+YL+ +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+
Sbjct: 118 AFVAYLNTNKTAVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    + +L EHP EAK +V K+ DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFADFLLEHPNEAKAVVGKMNDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG++ ++I+KLRYH II
Sbjct: 358 SQEVGTLITALGCGIGREEYNIDKLRYHNII 388


>gi|84310494|gb|ABC55395.1| DNA gyrase subunit B [Bacillus mojavensis]
 gi|115333967|gb|ABI94016.1| DNA gyrase subunit B [Bacillus axarquiensis]
 gi|115333969|gb|ABI94017.1| DNA gyrase subunit B [Bacillus axarquiensis]
 gi|115333971|gb|ABI94018.1| DNA gyrase subunit B [Bacillus malacitensis]
 gi|115333973|gb|ABI94019.1| DNA gyrase subunit B [Bacillus malacitensis]
          Length = 390

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 195/392 (49%), Positives = 275/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+   +  G+  + L V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQVYNRGVPVSDLEVIGETDH-TG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF+    + YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFTETTEYEYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  L  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSAALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVV 390


>gi|31071475|dbj|BAC76786.1| DNA gyrase B subunit [Nostoc entophytum]
          Length = 396

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 186/393 (47%), Positives = 259/393 (65%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I V +N DGS TV+D+GRGIPTD H   G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHIEVDINADGSVTVTDDGRGIPTDTHSRTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVG+SVVNALS  +++ + R+  ++   +  G   
Sbjct: 62  ETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHVQRYERGTPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L V       TGT VTF P   IF+   +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TDLQVKAYKEARTGTSVTFKPDIQIFTTGIEFDYITLSGRLRELAYLNAGVKITFTDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S  P+  +  YKGGI+ +++Y++R K+PL +  I +QG R+N+ ++++++W  D Y
Sbjct: 182 ELLKSDTPKVESYEYKGGIKEYIAYMNREKRPLHEEIIYVQGERNNVQVEVSLQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G+  REG T+V
Sbjct: 242 TDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEANLSGEHVREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +L  HP  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLGFHPGVADAILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|126035336|gb|ABN72421.1| gyrase B subunit [Shigella flexneri]
          Length = 385

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 233/387 (60%), Positives = 298/387 (77%), Gaps = 4/387 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYH 498
           QE+ TLITALG GIG+D ++ +KLRYH
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYH 384


>gi|12644442|sp|Q44088|GYRB_ACILW RecName: Full=DNA gyrase subunit B
 gi|12644445|sp|Q44272|GYRB_ACIG9 RecName: Full=DNA gyrase subunit B
 gi|4514413|dbj|BAA75405.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514425|dbj|BAA75411.1| DNA gyrase subunit B [Acinetobacter lwoffii]
          Length = 390

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 230/393 (58%), Positives = 288/393 (73%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I R G I+E  + +G    PL V G   N TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDT-NRTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TRVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--NAEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            FV Y++  K  L            + I++++A++WND Y ENV CFTNNIPQKDGGTHL
Sbjct: 118 EFVKYINEGKTHLNDIFHFTAAQADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y++     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVS
Sbjct: 178 AGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA 
Sbjct: 238 SEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+
Sbjct: 298 LPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMI 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SS E+GTLITALG GIG++ ++ +KLRYHKIII
Sbjct: 358 SSAEVGTLITALGCGIGREEYNPDKLRYHKIII 390


>gi|83017241|dbj|BAE53541.1| DNA gyrase B [Microbulbifer sp. MBIC08246]
 gi|83017243|dbj|BAE53542.1| DNA gyrase B [Microbulbifer sp. MBIC08259]
 gi|83017252|dbj|BAE53546.1| DNA gyrase B [Microbulbifer sp. MBIC08250]
          Length = 389

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 226/392 (57%), Positives = 295/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E  + +G+   PL V G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLIIRRGGKIHEQIYHHGVPQAPLEVVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSEDTFSNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EVYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQSQREDGIAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|228471272|ref|ZP_04056078.1| DNA topoisomerase II domain protein [Porphyromonas uenonis 60-3]
 gi|228306914|gb|EEK16012.1| DNA topoisomerase II domain protein [Porphyromonas uenonis 60-3]
          Length = 673

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 161/619 (26%), Positives = 266/619 (42%), Gaps = 68/619 (10%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           + Y  D  + L   + ++KRP MYIG     +    G++ +I EV+DN+IDE + G    
Sbjct: 19  AGYTEDDFRTLSWSEHIRKRPGMYIGKLGDGTQADDGIYILIKEVIDNSIDEFVMGVGSE 78

Query: 64  ITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           I +T++ +     + D GRGIP     +          ++++ G K + +++K S GL+G
Sbjct: 79  IRITIDGETNEVQIRDYGRGIPLGKLVDAT--------SKMNTGAKIDSQAFKKSVGLNG 130

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGSAGNDTGTEVTFLPSSDI 181
           VG+  VNALSS   ++  REG    +++    +             + GT V F P +++
Sbjct: 131 VGLKAVNALSSTFTVQSWREGETSSVTYERAEMIAHTPAEPWEDKEEHGTLVVFTPDAEV 190

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    ++   ++  +R   +LN+ + + L DK+           + G++ F+S       
Sbjct: 191 FRNSHYDLRHVEALVRNYCYLNTGLTLYLNDKK--------YVSRHGLQDFLSDTITG-- 240

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
                P+          I++A+   + Y E    F N      GGTHL+  R  + R I 
Sbjct: 241 ----DPLYPIIRLTGPDIEVAITHIEQYGEEFYSFVNGQYTTQGGTHLTAFREQVARVIK 296

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV------ 355
            +  K F            D R G  + +SI++ +P F SQTK KL S E+         
Sbjct: 297 EFSGKGFEYG---------DIRSGMAAAISIRIIEPEFESQTKIKLGSKEMVPQDPMFEH 347

Query: 356 -------VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-------R 401
                  V+ FV D L   L+ +      I + +L      +  R+A            +
Sbjct: 348 EPLRGVTVQKFVGDFLKEKLDNYLHMHPEISEVMLQTIQANERERKAMSGVTKLARERAK 407

Query: 402 KGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           K  L             D   ++P+ + +F+ EG+SA GS  Q R    QA+  LRGK L
Sbjct: 408 KASLHNKKLRDCTEHYNDPKAKNPELTSIFITEGNSASGSITQSRDARYQAVFSLRGKPL 467

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N        +  ++E   L  AL    G     ++ LRY+++II TDAD DG HIR L L
Sbjct: 468 NSYGLSKKVVYENEEFNLLQAALNIEDG-----LDGLRYNRVIIATDADDDGMHIRLLTL 522

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           TFF +  P L+  G +YI++ PLY ++   + K     +   + +     +   E     
Sbjct: 523 TFFLQFFPELVRRGHVYILETPLYRVSLPAKRKKSITARVASAGKKKGGKKVTIEPASET 582

Query: 576 CDSKGVISKNDLRNFIDDA 594
             S    S  +L   ++  
Sbjct: 583 ETSAYCYSDQELNAAVERM 601


>gi|83017246|dbj|BAE53543.1| DNA gyrase B [Microbulbifer sp. MBIC08248]
          Length = 389

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 226/392 (57%), Positives = 295/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E  + +G+   PL V G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLIIRRGGKIHEQIYHHGVPQAPLEVVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSEDTFSNIEFHFDVLAKRLRELSFLNSGVRIILKDERSGKE--EVYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQSQREDGIAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|18147147|dbj|BAB83054.1| DNA gyrase subunit B [Halomonas marina]
          Length = 389

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 230/392 (58%), Positives = 287/392 (73%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  LKL I R+G ++E  + +G+ + PL V G+    +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELKLTIWRQGKVHEQIYRHGVPEAPLAVVGNTE-KSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   F    F+Y+ L  RLRELSFLNS V I LID+RS +       Y+GG++
Sbjct: 60  TLVRFKPSPLTFGNIAFHYEILAKRLRELSFLNSGVAIRLIDERSGKE--ELFHYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+ +K  L           D I +++AM+WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVDHLNTNKAALNPVFHFEMEREDGIGVEVAMQWNDAFSENIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK K    GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRTLNSYIEAEGLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGRLFSEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG++ F+ +KLRYH +II
Sbjct: 358 SAEVGTLITALGCGIGREEFNPDKLRYHSVII 389


>gi|211927063|dbj|BAG82784.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 393

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 195/392 (49%), Positives = 274/392 (69%), Gaps = 3/392 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGT 171
            YKVSGGLHGVG SVVNALSS L +++ R G+IY M F  G +  P+ + G A +D  GT
Sbjct: 3   GYKVSGGLHGVGASVVNALSSSLDVKVTRNGHIYYMDFERGKVKTPMKIIGDAPDDAHGT 62

Query: 172 EVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F+P  DIF     ++ + L  R+REL+FLN  ++I++ D R  EP E    Y+GGI 
Sbjct: 63  AVHFVPDPDIFRETTTYDINILTTRIRELAFLNKGLRITIRDNRPDEPTEDDFLYEGGIR 122

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            +V YLD++K  L   PI ++G ++ I++++A+++ D YH N++ FTNNI   +GGTH  
Sbjct: 123 HYVEYLDKNKTVLFPEPIYVEGEQNGITVEVALQYTDDYHSNLMTFTNNIHTYEGGTHEE 182

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G + ALTR I  Y  K+   K+   ++ G+D REG T+V+S+K PDP+F  QTK KL +S
Sbjct: 183 GFKRALTRVINDYARKNNLLKESDANLSGEDVREGMTAVVSVKHPDPQFEGQTKTKLGNS 242

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           + R+ V+   ++  S +L E+P  A+ +V K + AS  R AA+RAR++TR+K  L+I++L
Sbjct: 243 DARAAVDRLFSEHFSKYLMENPSVARKVVDKGMLASKARVAAKRAREVTRKKSGLEISNL 302

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLAD + +DP+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  DK+L+
Sbjct: 303 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASIDKILA 362

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ++EI +L TA+GTG G D FD++K  YHK+II
Sbjct: 363 NEEIRSLFTAMGTGFGGD-FDLSKANYHKLII 393


>gi|82568121|dbj|BAE48495.1| DNA gyrase B [Mechercharimyces mesophilus]
          Length = 389

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 197/393 (50%), Positives = 283/393 (72%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            + Y  SGGLHGVGVSVVNALS WL+++++R+G I+   +  G+    L V G   ++TG
Sbjct: 1   GEGYTFSGGLHGVGVSVVNALSEWLEVKVRRDGKIHFQRYERGVPQADLKVIGET-DETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           TE+ F P  D+F+    ++Y+TLQ RLRELSFLNS + I++ D+R  +         GGI
Sbjct: 60  TEIHFKPDPDVFTETTEYDYNTLQTRLRELSFLNSGLAITITDERGDKSDHYKF--DGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+R+++ + + P+ IQG++D +++++AM++ND +  ++  + NNI   +GGTH 
Sbjct: 118 RSYVEHLNRNREVMHKEPVYIQGTKDGLNVEIAMQYNDSFSSHIYSYANNIHTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  ++   K    ++ GDD REG TS++S+K+ DP+F  QTK KL +
Sbjct: 178 AGFKSALTRVINDYARRNNLLKGQDSNLTGDDVREGLTSIISVKIADPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R+V ES  ++    +LEEHP EAK +++K L A+  R+AARRAR+LTRRK  L+++S
Sbjct: 238 SEARTVTESLFSEHFHIFLEEHPQEAKKVIQKALTAARAREAARRARELTRRKNALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ R+   SEL+LVEGDSAGG+AKQGR R  QAILPLRGKI+NVE++R DK L
Sbjct: 298 LPGKLADCTSRNASSSELYLVEGDSAGGTAKQGRDRMFQAILPLRGKIINVEKSRLDKAL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++E+ T+ITALGTG+G+D F I+K RYHKIII
Sbjct: 358 SNEEVRTIITALGTGVGED-FQIDKARYHKIII 389


>gi|157073817|dbj|BAF79907.1| gyrase B [Methylobacterium persicinum]
          Length = 399

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 244/399 (61%), Positives = 306/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WL+LRI R    + M F +G    PL V G      G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSQWLRLRIWRNDQEHAMEFRHGDAVAPLKVVGPGQGRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS+D F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y GGIE
Sbjct: 61  TEVTFLPSTDTFTMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYDGGIE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR KKP+  M +P+ ++  R+ I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSKKPIEGMTNPVTVRAEREGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQIT Y + S  SK++K ++ G+DCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQITGYADSSGVSKREKVTLTGEDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENVLNEGLSTWLEENPQQARAVMGKVVLAASAREAARKARETVTRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|306517915|emb|CBL53381.1| gyrase B subuni [Photobacterium ganghwense]
          Length = 386

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 226/387 (58%), Positives = 299/387 (77%), Gaps = 3/387 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L I R G+I++  + +G    PL V G + + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHQQIYHHGEPQAPLAVIGDS-DRTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F PS+  FS  +F+Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI+A
Sbjct: 60  RIRFWPSAATFSNIEFHYEILAKRLRELSFLNSGVSIRLIDER-EENKQDHFMYEGGIKA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+R+K P+       + +R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 FVEHLNRNKTPIHPKVFHFEFTREDGIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR +  ++EK   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRGALTRTLNLFMEKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VES + + LS +L E+P +AK +  K+++AS  R+AAR+AR++TRRKG LD+A L
Sbjct: 239 EVKPAVESAMGEKLSEFLLENPSDAKTVCSKIIEASRAREAARKAREMTRRKGALDLAGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 299 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRY 497
           SQE+ TLITA+G GIG+D ++ +KLRY
Sbjct: 359 SQEVATLITAMGCGIGRDEYNPDKLRY 385


>gi|148793356|gb|ABR12742.1| DNA gyrase beta subunit [Photobacterium indicum]
          Length = 389

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 231/391 (59%), Positives = 302/391 (77%), Gaps = 3/391 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L I R G+I+   + +G+ D PL   G   + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRHGSIHHQIYHHGVPDKPLEAIGET-DKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F PS D F+   F+Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI+A
Sbjct: 60  RIRFWPSEDTFTNVVFHYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGIKA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+R+K P+          R++ IS+++AM+WNDG+ E + CFTNNIPQ+DGG+HL+
Sbjct: 119 FVEHLNRNKTPIHSKVFHFDFEREDGISVEVAMQWNDGFQEGIYCFTNNIPQRDGGSHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + ++++K   SKK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRGALTRTLNTFMDKEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VES +N+ LS +L E+P +AKI+  K++DAS  R+AAR+AR++TRRKG LD+A L
Sbjct: 239 EVKPAVESAMNEKLSEFLLENPSDAKIVCSKIIDASRAREAARKAREMTRRKGALDLAGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 299 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+ TLITA+G GIG+D ++ +KLRYH II
Sbjct: 359 SQEVATLITAMGCGIGRDEYNPDKLRYHNII 389


>gi|126035248|gb|ABN72377.1| gyrase B subunit [Enterobacter cloacae]
          Length = 386

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 236/389 (60%), Positives = 301/389 (77%), Gaps = 4/389 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ D PL VTG   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+A
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 238 VKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKI 500
           QE+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSI 386


>gi|224023524|ref|ZP_03641890.1| hypothetical protein BACCOPRO_00226 [Bacteroides coprophilus DSM
           18228]
 gi|224016746|gb|EEF74758.1| hypothetical protein BACCOPRO_00226 [Bacteroides coprophilus DSM
           18228]
          Length = 648

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 181/683 (26%), Positives = 291/683 (42%), Gaps = 87/683 (12%)

Query: 1   MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNA 52
           M +  +  +    Y  ++I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN 
Sbjct: 3   MEEINEQQNTPVSYTEENIRHLSDMEHVRTRPGMYIGRLGDGSQAEDGIYVLLKEVVDNC 62

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE   G    I + +  +   +V D GRGIP         S  + + + L+ GGK++ K
Sbjct: 63  IDEFKMGAGKRIDIQMEDNLRVSVRDYGRGIPLG-------SLVDAV-SMLNTGGKYDTK 114

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           ++K S GL+GVG   VNALSS    R  R+G + E  F  G L +    T S   + GT 
Sbjct: 115 AFKKSVGLNGVGAKAVNALSSRFVARSVRDGQMREAIFTQGNLISD--TTSSTDEENGTY 172

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P + +F    F  + ++  LR  ++LN+ + I     R           + G+E  
Sbjct: 173 IFFEPDNTLFLNYHFRPEFIETMLRNYTYLNTGLAIYYNGHRI--------ISRNGLEDL 224

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++     +       I ++G      I++A   +  Y E    F N      GGTH S  
Sbjct: 225 LNDNMTSQGLY--PIIHLKGED----IEIAFTHSPQYGEEYYSFVNGQHTTQGGTHQSAF 278

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +  L R I  +  K+         +   D R G  + ++I + +P F SQTK KL S  +
Sbjct: 279 KEHLARTIKEFFGKN---------MEFQDIRNGLVAAVAINVIEPTFESQTKIKLGSLTM 329

Query: 353 RS------------------VVESFVNDGLSAWL--------------EEHPLEAKIIVK 380
                                V  FV + +  +L              +E   E K I  
Sbjct: 330 APEKDSDGNPYPLSGVSVNKFVGDFVKENVDNYLHKHADVAEVLLQKIQESEKERKAIAG 389

Query: 381 KVLDAS-MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
               A    + A    R L   +  L+   +     D  +    +S +F+ EGDSA GS 
Sbjct: 390 VTKIARERAKKANLHNRKLRDCRIHLND--VKTGKKDDEDDPRAESSIFITEGDSASGSI 447

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
            + R    QA+  LRGK LN        +  ++E   L  AL    G     ++ LRY+K
Sbjct: 448 TKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALNIEDG-----LDGLRYNK 502

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS----LQYVKD 555
           +I+ TDADVDG HIR L++TFF +  P LI  G +YI++ PL+ +   K       Y   
Sbjct: 503 VIVATDADVDGMHIRLLMMTFFLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETIYCYT 562

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           +E     +     + EI  F    G IS ++ RNFI   ++++++      +  +  +E 
Sbjct: 563 DEERVAAIEKLGPNPEITRF-KGLGEISPDEFRNFIGKDMRLEQVTLR-KTDAVRELLEF 620

Query: 616 AVISGVFNCESDQEINVSLASKL 638
            +       ++    N+ +   L
Sbjct: 621 YMGKNTMERQNFIIDNLVVEEDL 643


>gi|116488839|gb|ABJ98770.1| DNA gyrase B [Silicibacter lacuscaerulensis ITI-1157]
          Length = 382

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 238/382 (62%), Positives = 296/382 (77%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS WL+LRI R G  +   F  G     L V G  G+ TGTEV 
Sbjct: 1   QVSGGLHGVGVSVVNALSDWLELRIWRNGKEHFARFERGETVEHLKVVGECGDRTGTEVR 60

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL S+D FS  +++++TL+ RLREL+FLNS V+I L+D+R  E  E  +FY+GG++ FV 
Sbjct: 61  FLASTDTFSNLEYSFETLEKRLRELAFLNSGVRIILVDERPAERLETELFYEGGVKEFVK 120

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLDR K P M  PI I+G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R+
Sbjct: 121 YLDRSKTPAMPEPIYIKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRA 180

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I +Y + S  +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR 
Sbjct: 181 ALTRTINNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRP 240

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  VN+ L+ W EE+P EAK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL
Sbjct: 241 AVEGMVNEKLAEWFEENPNEAKTIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKL 300

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DCSE+DP K+ELFLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+MLSSQEI
Sbjct: 301 KDCSEKDPSKTELFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLSSQEI 360

Query: 475 GTLITALGTGIGQDSFDINKLR 496
           G L+ ALGTGIG+D FDI+KLR
Sbjct: 361 GNLVMALGTGIGRDEFDISKLR 382


>gi|240280878|gb|EER44382.1| DNA topoisomerase 2 [Ajellomyces capsulatus H143]
          Length = 1737

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 150/702 (21%), Positives = 259/702 (36%), Gaps = 49/702 (6%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
           +++  Q L  L+ + KRP  YIG  +  +                      GL+ +  E+
Sbjct: 134 NSEKYQKLTQLEHIIKRPDTYIGSIERSTNQMWVYNMQSGSMEFREVSYVPGLYKIFDEI 193

Query: 49  LDNAIDE-SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D    +   D I VTL+ + G  +V +NGRGIP ++H +E +   E++   L + 
Sbjct: 194 LVNAADNKHNDKNMDEIRVTLDRESGEISVWNNGRGIPIEIHAKEKVYIPELVFGHLLSS 253

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGS 164
             ++    KV+GG +G G  + N  S+   L          Y+ ++ + +          
Sbjct: 254 SNYDDNQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTDNMSKMGKPKITD 313

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
              D  T+VTF+P    F +   + D    ++ R+ +L+     V + L   R P     
Sbjct: 314 CKGDDYTKVTFIPDFKKFGMDGIDDDFEALVKRRVYDLAGTCK-VTVKLNGSRIPIRNFK 372

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                       +      +   +    I     +   ++    +DG  + V  F N+I 
Sbjct: 373 QYMQMY----TNAIKKERGEEASKDKSEIITDNPDPRWEIGFAVSDGSFQQV-SFVNSIA 427

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG+H++ +   +       VE      K   ++     R      ++ ++ +P F+S
Sbjct: 428 TTSGGSHVNSVADQI---CNKLVEAVKKKNKTGATLKPAQIRNHIFVFVNAQIVNPAFTS 484

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE+L +   +   +  ++D     + +  +   I+      A  +       R     
Sbjct: 485 QTKEQLTTKPSQFGSKCVLSDEFLKKILKTQVMENILHFAEKKADQILKKTDGNRRSRMN 544

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
              L  A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+L
Sbjct: 545 NPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLL 598

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A  D++  + EI  +   LG    ++  D   LRY  ++IMTD D DG+HI+ LL+
Sbjct: 599 NVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLI 658

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            FF    PSL+      I    P+  + +G        +                     
Sbjct: 659 NFFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKVFFTMQEYKTWQEIHGHDKRW 718

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
            K         +  D  +    L K     H     E  +I   F+ +   E       +
Sbjct: 719 EKKYYKGLGTSSTDDAEIYFRDLDKHLKQFHVMQDHEAELIDLAFSKKKADER-KEWLRQ 777

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                       E ++   IN   IL            V++G
Sbjct: 778 FKPGTFLDHTTDEITYTDFINKELILFSMADNIRSIPSVIDG 819


>gi|148971397|gb|ABR20236.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 428

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 202/432 (46%), Positives = 281/432 (65%), Gaps = 15/432 (3%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++K YK++GGLHGVGV VVNALSS L   +K+  ++Y M F  GI  
Sbjct: 1   EVIMTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSSRLVAVVKKPESMYSMEFSKGITQ 60

Query: 157 ------NPLVVTG-----SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
                  P  +TG     +  + +GT   F P  +IF    F+ + L+ RLREL+FLNS+
Sbjct: 61  GTIAKRTPDEITGMGIKLNMPDKSGTVTKFWPDPEIFQTLKFSREILEKRLRELAFLNSN 120

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           +   L D+   +    +  + GG+ AFV+Y+   + PL+ S I     +D I ++ A+++
Sbjct: 121 ITFILSDE--SDSYVNSFHFDGGLSAFVAYISEGENPLLSSTIHETSEKDGIILEYALQY 178

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
            +   E +  F NNI   +GGTHL+G ++ L++ +  +  K    K    +VIG+D REG
Sbjct: 179 TNSGSEIIEGFVNNIGTPEGGTHLAGFKAGLSKAVLDFARKKDTYKGID-TVIGEDIREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             S++ +KM +P+F  QTK KL +SEV+ +V+S V   +  +LE +P  A  IVK+ + A
Sbjct: 238 IVSIVHVKMMNPQFEGQTKAKLGNSEVKGIVQSMVESTMKLFLESYPAYADKIVKRAMLA 297

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+A+RRAR+L RRK  L+  +LPGKL+DCS  D +KSEL++VEG+SAGGS KQ R+R
Sbjct: 298 AEAREASRRARELVRRKTTLESGTLPGKLSDCSSTDEEKSELYIVEGNSAGGSTKQARNR 357

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           E QA+LPLRGKILNVE+   DK  S+Q I  LI  LG+GIG +  D+ KLRY KIIIMTD
Sbjct: 358 EFQAVLPLRGKILNVEKVSDDKAFSNQIIRDLIAVLGSGIGDEI-DLKKLRYGKIIIMTD 416

Query: 506 ADVDGAHIRTLL 517
           ADVDG+HIRTLL
Sbjct: 417 ADVDGSHIRTLL 428


>gi|157073823|dbj|BAF79910.1| gyrase B [Methylobacterium tardum]
          Length = 399

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 247/399 (61%), Positives = 306/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALSSWL+LRI R    + M F +G    PL V G      G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSWLRLRIWRNDTEHAMEFRHGDAVAPLEVVGPGNGRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y+GGIE
Sbjct: 61  TEVTFLPSTETFTMIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYEGGIE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M SP+ +   RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPIDGMTSPVVVSSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQIT Y E S  +KK+K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQITGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENVLNEGLSTWLEENPSQARSVMGKVVLAASAREAARKARETVTRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+  KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|157073819|dbj|BAF79908.1| gyrase B [Methylobacterium brachiatum]
 gi|157073821|dbj|BAF79909.1| gyrase B [Methylobacterium brachiatum]
 gi|157073827|dbj|BAF79912.1| gyrase B [Methylobacterium brachiatum]
          Length = 399

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 247/399 (61%), Positives = 308/399 (77%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALSSWLKLRI R    + M F +G   +PL V G      G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSWLKLRIWRNEMEHAMEFRHGDAVSPLKVVGPGNGRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS+D F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y+GGIE
Sbjct: 61  TEVTFLPSTDTFTMIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEHKREELYYEGGIE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M SP+ ++  R+ I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPIEGMSSPVVVRAEREGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQIT Y + S  SK++K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQITGYADSSGVSKREKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENVLNEGLSTWLEENPQQARSVMGKVVLAASAREAARKARETVTRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+  KLRYH+III
Sbjct: 361 LSSVEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|4514433|dbj|BAA75415.1| DNA gyrase subunit B [Acinetobacter radioresistens]
          Length = 389

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 231/392 (58%), Positives = 291/392 (74%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L ++R G I+E  + +G+   PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQTE-RTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TKVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLCDERI--NLEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKNHLNEIFHFTTQAENGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SELFLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+S
Sbjct: 298 PGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG++ ++ +KLRYHKI+I
Sbjct: 358 SAEVGTLITALGCGIGREEYNPDKLRYHKIVI 389


>gi|157073815|dbj|BAF79906.1| gyrase B [Methylobacterium komagatae]
          Length = 399

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 245/399 (61%), Positives = 306/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WL+LRI R    + M F +G    PL V G      G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSQWLRLRIWRNDQEHSMEFRHGDAVAPLKVVGPGEGKRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y GGIE
Sbjct: 61  TEVTFLPSTETFTMIEFDYPTLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYDGGIE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR KKP+  M +P+ ++  RD I ++ A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSKKPIDGMTNPVVVRADRDGIRVECAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQIT Y + S  SK++K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQITGYADSSGVSKREKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +A++++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENVLNEGLSTWLEENPQQARVVMSKVVLAASAREAARKARETVTRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|41387082|gb|AAS01495.1| GyrB [Bacillus sp. SAFR-048]
          Length = 392

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 192/395 (48%), Positives = 277/395 (70%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPAADLKVIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P S+IF+    + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ + GS+D I +++A+++N+GY  ++  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           S+ E+ T+ITA+GT IG D F I K RYHK+IIMT
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FAIEKARYHKVIIMT 392


>gi|23978214|dbj|BAC21106.1| DNA gyrase B subunit [Oscillatoria agardhii]
          Length = 396

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 186/395 (47%), Positives = 254/395 (64%), Gaps = 7/395 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DNAIDE+L GY   I +  N +GS TV+D+GRGIP D H + G SA 
Sbjct: 2   GPRGLHHLVYEVVDNAIDEALAGYCTHIEIDFNANGSVTVTDDGRGIPVDTHSKTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVGVSVVNALS WL++ + R+   Y   F  G   
Sbjct: 62  ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPA 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID--- 212
             L         TGT V+FLP + IF+   +F+ DT+  RLREL++LN+ V+I+L D   
Sbjct: 122 TELTSKPIKEARTGTSVSFLPDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 181

Query: 213 --KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
                  PR  T  Y+GGI  +++Y++  K+PL +  I   G R N+ I++A++W  D Y
Sbjct: 182 ELLNRENPRIETYCYEGGIREYIAYMNNDKQPLHEDIIYTCGERSNVQIEVALQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            + VL F NNI   DGGTHL GL++ LTR + +   K    K+ + ++ G++ REG T+V
Sbjct: 242 SDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S K+PDP F  QTK +L + EVR +V+S V + L+ +LE +P  A  I++K + A    
Sbjct: 302 ISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAIIEKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +AARRARDL RRK VL+ + LPGKLADCS RDP +
Sbjct: 362 EAARRARDLVRRKSVLESSPLPGKLADCSTRDPHE 396


>gi|66474509|gb|AAY46824.1| GyrB [Aeromonas schubertii]
          Length = 385

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 232/388 (59%), Positives = 295/388 (76%), Gaps = 3/388 (0%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           G+F+  SYKVSGGL GVGVSVVNALS  L L I+R G++YE ++  G    PL   G A 
Sbjct: 1   GEFDDNSYKVSGGLDGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+
Sbjct: 61  -TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LD
Sbjct: 238 LVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINK 494
           KM+SSQE+GTLITALG GIG+D ++ +K
Sbjct: 358 KMISSQEVGTLITALGCGIGRDEYNPDK 385


>gi|83854015|gb|ABC47945.1| gyrase B subunit [Plesiomonas shigelloides]
          Length = 382

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 227/385 (58%), Positives = 294/385 (76%), Gaps = 3/385 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG ++   +  G    PL V G   N TGT+V F P
Sbjct: 1   GGLHGVGVSVVNALSDKLELMIRREGKVHTQEYHLGEPVAPLAVVGDT-NATGTQVRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S  IF+  +F Y+ L  RLRELSFLNS V I L+DKR+ +       Y+GGI+AFV YL+
Sbjct: 60  SPTIFTNIEFQYEILAKRLRELSFLNSGVSIHLLDKRNDKQ--DHFKYEGGIQAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           R+K P+          +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+T
Sbjct: 118 RNKNPIHDKVCYFSSEKDGIGVEVALQWNDGFQENLYCFTNNIPQRDGGTHLAGFRAAMT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+EK   +KK K ++ GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+  VE
Sbjct: 178 RTLNAYIEKEGFAKKAKINMTGDDSREGLTAVISVKVPDPKFSSQTKDKLVSSEVKPAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + + L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 238 SLMGERLQEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP   EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 298 QERDPALFELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 357

Query: 478 ITALGTGIGQDSFDINKLRYHKIII 502
           ITALG GIG+D ++ +KLRYH III
Sbjct: 358 ITALGCGIGRDEYNPDKLRYHSIII 382


>gi|32364174|gb|AAP80235.1| GyrB [Gallibacterium genomosp. 1]
          Length = 386

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 231/388 (59%), Positives = 299/388 (77%), Gaps = 3/388 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG+++E  +  G    PL V G + + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLQLTIRREGHVHEQFYCLGEPQAPLAVIGES-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS  IFS  +F Y+ L  RLRELSFLNS V I LID R+   R     Y+GGI+
Sbjct: 60  TTVRFWPSPSIFSDTEFQYEVLSKRLRELSFLNSGVSIRLIDLRT--NRSDHFHYEGGIQ 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+++K P+   P  +   +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEYLNKNKNPIHSKPFYLNTEKDGIGVEVALQWNDGFQENLYCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+A+TR + +Y+EK   +KK K ++ GDD REG  +++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAAMTRTLNNYMEKEGYNKKSKVAMAGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+SVVES V + L  +L E+P +AKIIV K++DA+  R+AAR+AR++TRRKG LD+  L
Sbjct: 238 EVKSVVESAVGERLQEYLLENPNDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
            GKLADC ERDP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD+MLS
Sbjct: 298 RGKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDRMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYH 498
           SQE+  LITALG GIG+D ++ +KLRYH
Sbjct: 358 SQEVAALITALGCGIGRDEYNPDKLRYH 385


>gi|19909623|dbj|BAB87007.1| DNA gyrase subunit B [Oceanospirillum maris]
          Length = 388

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 226/391 (57%), Positives = 295/391 (75%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L + R G ++E  +++G+   PL V G + + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLTLTVWRSGKLHEQVYVHGVPQTPLRVIGDS-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE  F PS + F+  +F+YD L  RLRELSFLNS V I L+D+RS   R     Y+GG+ 
Sbjct: 60  TETRFHPSPETFTNVEFHYDILAKRLRELSFLNSGVSIILLDERSG--RTDNFKYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV+YL+++K  L           D  ++++A++WN+ Y EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVTYLNQNKTALNDVFHFTSEREDGTTVEVALQWNESYQENIYCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+E+    KKD+ +  G+D REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRTLNTYIEQDPKVKKDRANTSGEDAREGLTAIVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L+E P EAK IV K+LDA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGRLFSDYLQEKPNEAKAIVNKMLDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S E+GTLITA+G GIG++ F+ +KLRYH II
Sbjct: 358 SVEVGTLITAMGCGIGREEFNPDKLRYHSII 388


>gi|148611271|gb|ABQ95824.1| DNA gyrase subunit B [Acidiphilium sp. DX6]
          Length = 400

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 232/402 (57%), Positives = 294/402 (73%), Gaps = 9/402 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVG +VVNALS W+++RI R+G  + + F NG    PL V G++ + T
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT VTF PS+  F+  +F++   + RLREL+FLNS + I+L D+R    +E    Y GG+
Sbjct: 61  GTSVTFRPSAATFTRTEFDFAIYERRLRELAFLNSGLTINLRDERHSAVQEAHFRYGGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
             FVS+LDR K  L   P+          I ++ A+ WND YHE +LCFTNNI Q+DGGT
Sbjct: 121 VEFVSWLDRAKTQLFSPPVTAFKDDAPGGIKVEFALAWNDTYHETMLCFTNNIVQRDGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G RSALTR ++ Y E          S+ G+D REG T+VLS+K+PDP+FSSQTK+KL
Sbjct: 181 HLAGFRSALTRVVSKYAESLGKKDS--LSLSGEDMREGLTAVLSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+ +V++ V D L  W E HP E ++I +KV+DA+  R+AA +AR+LT RKGVLDI
Sbjct: 239 VSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAAHKARELTHRKGVLDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+
Sbjct: 299 STLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 358

Query: 468 MLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMT 504
           ML S EIGTLITALGTGIG     Q  FDI+KLRYH+I+IMT
Sbjct: 359 MLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|82568125|dbj|BAE48497.1| DNA gyrase B [Mechercharimyces asporophorigenens]
          Length = 389

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 196/393 (49%), Positives = 284/393 (72%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            + Y  SGGLHGVGVSVVNALS WL+++++R+G I+   +  G+    L V G   ++TG
Sbjct: 1   GEGYTFSGGLHGVGVSVVNALSEWLEVKVRRDGKIHFQRYERGVPQADLKVIGET-DETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           TE+ F P  D+F+    ++Y+TLQ RLRELSFLNS + I++ D+R  +         GGI
Sbjct: 60  TEIHFKPDPDVFTETTEYDYNTLQTRLRELSFLNSGLAITITDERGDKSDHYKF--DGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+R+++ + ++P+ IQG++D +++++AM++ND +  ++  + NNI   +GGTH 
Sbjct: 118 RSYVEHLNRNREVMHKTPVYIQGTKDGLNVEIAMQYNDSFSSHIYSYANNIHTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  ++   K    ++ GDD REG T+++S+K+ DP+F  QTK KL +
Sbjct: 178 AGFKSALTRVINDYARRNNLLKGQDSNLTGDDVREGLTAIISVKIADPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R+V ES  ++    +LEEHP EAK +++K L A+  R+AARRAR+LTRRK  L+++S
Sbjct: 238 SEARTVTESLFSEHFHIFLEEHPQEAKKVIQKALTAARAREAARRARELTRRKNALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ R+   SEL+LVEGDSAGG+AKQGR R  QAILPLRGKI+NVE++R DK L
Sbjct: 298 LPGKLADCTSRNASSSELYLVEGDSAGGTAKQGRDRMFQAILPLRGKIINVEKSRLDKAL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++E+ T+ITALGTG+G+D F I+K RYHKIII
Sbjct: 358 SNEEVRTIITALGTGVGED-FQIDKARYHKIII 389


>gi|4996790|dbj|BAA78440.1| subunit B protein of DNA gyrase [bacterium rM1]
          Length = 300

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 202/303 (66%), Gaps = 9/303 (2%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGI 93
              +GLHHM++EV+DNAIDE+L G+ D I VT++ D S +V+DNGRGIPTD+HK  E G 
Sbjct: 1   SDGTGLHHMVFEVVDNAIDEALAGHCDDIVVTIHADNSVSVTDNGRGIPTDIHKDDEFGR 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAE++MT LHAGGKF+  SYKVSGGLHGVGVS VNALS WL+L I R G  +EM F  G
Sbjct: 61  SAAEIVMTELHAGGKFDHNSYKVSGGLHGVGVSCVNALSQWLRLTIWRNGQTHEMEFRQG 120

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL VTG   +  GT V FL    IF   ++ YD L  RLRELSFLN+ V++ L+D+
Sbjct: 121 ERVEPLSVTG-TADRKGTSVRFLADGTIFENIEYQYDVLAKRLRELSFLNNGVKVRLVDE 179

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGY 269
           R  +       + GG++ FV Y++R K  L  +   +        + + +D+AM+WND Y
Sbjct: 180 RQGKE--EDFAFLGGVKGFVDYINRSKTVLHPNVFSVSTESSAGGETVGVDVAMQWNDSY 237

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E VLCFTNNIPQ+DGG+HL+GLR+A+TR I  Y+  +  +KK K    GDD REG   V
Sbjct: 238 SETVLCFTNNIPQRDGGSHLTGLRAAMTRVINKYIADNELAKKAKVDTSGDDMREGLACV 297

Query: 330 LSI 332
           LS+
Sbjct: 298 LSV 300


>gi|148611291|gb|ABQ95834.1| DNA gyrase subunit B [Acidiphilium sp. DBS2]
          Length = 400

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 234/402 (58%), Positives = 297/402 (73%), Gaps = 9/402 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVG +VVNALS W+++RI R+G  + + F NG    PL V G++ + T
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT VTF PS+  F+  +F++   + RLREL+FLNS + I+L D+R    +E    Y+GG+
Sbjct: 61  GTSVTFRPSAATFTRTEFDFAIYERRLRELAFLNSGLTINLRDERHSAVQEAHFRYEGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
             FVS+LDR K  L   P+          I ++ A+ WND YHE +LCFTNNI Q+DGGT
Sbjct: 121 VEFVSWLDRAKTQLFSPPVTAFKDDAPGGIEVEFALAWNDTYHETMLCFTNNIVQRDGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G RSALTR ++ Y E          S+ G+D REG T+VLS+K+PDP+FSSQTK+KL
Sbjct: 181 HLAGFRSALTRVVSKYAESLGKKDS--LSLSGEDMREGLTAVLSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+ +V++ V D L  W E HP E ++I +KV+DA+  R+AAR+AR+LTRRKGVLDI
Sbjct: 239 VSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRKGVLDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+
Sbjct: 299 STLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 358

Query: 468 MLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMT 504
           ML S EIGTLITALGTGIG     Q  FDI+KLRYH+I+IMT
Sbjct: 359 MLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|23978211|dbj|BAC21105.1| DNA gyrase B subunit [Anabaena variabilis]
          Length = 396

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 187/395 (47%), Positives = 262/395 (66%), Gaps = 7/395 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I V +N DGS TV+D+GRGIPTD H   G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHIEVDINADGSVTVTDDGRGIPTDTHSRTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVG+SVVNALS  +++ + R+  ++   +  GI  
Sbjct: 62  ETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHIQRYERGIPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L+        TGT V+F P S IF+   +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELIAKPYKEARTGTSVSFKPDSQIFTNSIEFDYITLSSRLRELAYLNAGVKITFTDNRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S  P+  +  YKGGI+ +++Y++R K+PL +  I +QG R+N+ I+++++W  D Y
Sbjct: 182 ELLKSDTPKVESYEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERNNVQIEVSLQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F  NI   DGGTHL GL++ LTR + +   K    K+++ ++ G+  REG T+V
Sbjct: 242 TDNVLGFATNIRTIDGGTHLEGLKAVLTRTLNTIARKRNKIKENEANLSGEHVREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE HP  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIADAILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +AAR AR+L RRK VL+ + LPGKLADCS RDP +
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDPSE 396


>gi|83017270|dbj|BAE53554.1| DNA gyrase B [Microbulbifer sp. MBIC03330]
          Length = 389

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 225/392 (57%), Positives = 295/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E  + +G+   PL + G + + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLIIRRGGKIHEQIYHHGVPQAPLGIVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D FS  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSEDTFSNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EIYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D I++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFQSQRDDGIAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+EK    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNNYIEKEGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|33590358|gb|AAQ22719.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 383

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 226/386 (58%), Positives = 297/386 (76%), Gaps = 4/386 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    YKGGI
Sbjct: 60  TRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYKGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV +L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR + SY++K   +KK K S  GDD R+G  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDARQGLVAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKL 495
           SSQE+ TLITALG GIG+D ++ +KL
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKL 383


>gi|320032749|gb|EFW14700.1| DNA topoisomerase 2 [Coccidioides posadasii str. Silveira]
          Length = 1717

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 146/693 (21%), Positives = 257/693 (37%), Gaps = 43/693 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGD----------------------TDGESG 40
            N  +S   +D  Q L  ++ + KRP  YIG                            G
Sbjct: 125 TNEASSGKSSDQYQKLSQVEHIIKRPDTYIGSIERTQQNMWVYNSTTDQMEYREVSYVPG 184

Query: 41  LHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEV 98
           L+ +  E+L NA D          I VTL+M+ G  +V +NGRGIP ++H +E I   E+
Sbjct: 185 LYKIFDEILVNAADNKQRDNNMSEIKVTLDMEAGEISVWNNGRGIPVEIHSKEKIYIPEL 244

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILD 156
           I   L     ++    KV+GG +G G  + N  S+   +     R    Y  ++ + +  
Sbjct: 245 IFGHLLTSSNYDDDQAKVTGGRNGYGAKLCNIFSTEFTVETADSRSKKKYRQTWQDNMSK 304

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
                   +  +  T++TF P    F ++  + D      R +  L  + ++++    S 
Sbjct: 305 MGKAKITESKGNDYTKITFKPDFKKFGMEGMDADFEALVKRRVYDLAGTCRVTVRLNGSR 364

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
            P      Y       +      +         I         ++    +DG  + V  F
Sbjct: 365 IPISNFKKYMEMYTKAIKRERGEEAA--SDKSEIVTDSTEPRWEIGFAVSDGSFQQV-SF 421

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N+I    GGTH++ +   +  ++   V+K   +      +     R      ++  + +
Sbjct: 422 VNSIATTSGGTHVNYISDQICSKLADAVKKKNKTGPL---LKPAQIRNHIFLFVNCLIVN 478

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F+SQTKE+L + + +   +  +++     + +  +   I+      A  +      +R
Sbjct: 479 PAFTSQTKEQLTTKQSQFGSKCVLSEEFLKKILKTQVMQNIMHFAEQKADQILKKTDGSR 538

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPL 453
                   L  A+  G       ++     L L EGDSA G A  GR+    +   + PL
Sbjct: 539 RARMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPL 592

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNV  A  D++  +QEI  +   LG    ++  D   LRY  ++IMTD D DG+HI
Sbjct: 593 RGKLLNVRDASVDQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHI 652

Query: 514 RTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           + LL+ +     PSL+   GFL     P+  + +G        +         +      
Sbjct: 653 KGLLINYLQVAFPSLLKIPGFLIEFITPIVKVWKGDPKNPTASKSFFTLPEYEEWKKSHG 712

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                 K         +  D  +    L +     H     E  +I   F+ +   +   
Sbjct: 713 HDRRWDKKYYKGLGTSSTEDAEVYFRDLDRHLKEFHAMQDTEAQLIDLAFSKKKADDR-K 771

Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
               +            + ++   IN   IL  
Sbjct: 772 EWLRQFKPGTYLDHSVDKITYTDFINKELILFS 804


>gi|303322098|ref|XP_003071042.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110741|gb|EER28897.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 1717

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 146/693 (21%), Positives = 257/693 (37%), Gaps = 43/693 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGD----------------------TDGESG 40
            N  +S   +D  Q L  ++ + KRP  YIG                            G
Sbjct: 125 TNEASSGKSSDQYQKLSQVEHIIKRPDTYIGSIERTQQNMWVYNSTTDQMEYREVSYVPG 184

Query: 41  LHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEV 98
           L+ +  E+L NA D          I VTL+M+ G  +V +NGRGIP ++H +E I   E+
Sbjct: 185 LYKIFDEILVNAADNKQRDNNMSEIKVTLDMEAGEISVWNNGRGIPVEIHSKEKIYIPEL 244

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILD 156
           I   L     ++    KV+GG +G G  + N  S+   +     R    Y  ++ + +  
Sbjct: 245 IFGHLLTSSNYDDDQAKVTGGRNGYGAKLCNIFSTEFTVETADSRSKKKYRQTWQDNMSK 304

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
                   +  +  T++TF P    F ++  + D      R +  L  + ++++    S 
Sbjct: 305 MGKAKITESKGNDYTKITFKPDFKKFGMEGMDADFEALVKRRVYDLAGTCRVTVRLNGSR 364

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
            P      Y       +      +         I         ++    +DG  + V  F
Sbjct: 365 IPISNFKKYMEMYTKAIKRERGEEAA--SDKSEIVTDSTEPRWEIGFAVSDGSFQQV-SF 421

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N+I    GGTH++ +   +  ++   V+K   +      +     R      ++  + +
Sbjct: 422 VNSIATTSGGTHVNYISDQICSKLADAVKKKNKTGPL---LKPAQIRNHIFLFVNCLIVN 478

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F+SQTKE+L + + +   +  +++     + +  +   I+      A  +      +R
Sbjct: 479 PAFTSQTKEQLTTKQSQFGSKCVLSEEFLKKILKTQVMQNIMHFAEQKADQILKKTDGSR 538

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPL 453
                   L  A+  G       ++     L L EGDSA G A  GR+    +   + PL
Sbjct: 539 RARMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPL 592

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNV  A  D++  +QEI  +   LG    ++  D   LRY  ++IMTD D DG+HI
Sbjct: 593 RGKLLNVRDASVDQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHI 652

Query: 514 RTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           + LL+ +     PSL+   GFL     P+  + +G        +         +      
Sbjct: 653 KGLLINYLQVAFPSLLKIPGFLIEFITPIVKVWKGDPKNPTASKSFFTLPEYEEWKKSHG 712

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                 K         +  D  +    L +     H     E  +I   F+ +   +   
Sbjct: 713 HDRRWDKKYYKGLGTSSTEDAEVYFRDLDRHLKEFHAMQDTEAQLIDLAFSKKKADDR-K 771

Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
               +            + ++   IN   IL  
Sbjct: 772 EWLRQFKPGTYLDHSVDKITYTDFINKELILFS 804


>gi|126035352|gb|ABN72429.1| gyrase B subunit [Vibrio cholerae]
          Length = 383

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 227/385 (58%), Positives = 297/385 (77%), Gaps = 3/385 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++
Sbjct: 60  WPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R 
Sbjct: 119 LNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 179 ALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKS 238

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 239 AVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 298

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 299 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 358

Query: 475 GTLITALGTGIGQDSFDINKLRYHK 499
            TLITALG GIG+D ++ +KLRYH 
Sbjct: 359 ATLITALGCGIGRDEYNPDKLRYHN 383


>gi|32480593|gb|AAP83862.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 230/394 (58%), Positives = 295/394 (74%), Gaps = 2/394 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL- 59

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                 GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R    
Sbjct: 60  EVSAKRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQK
Sbjct: 119 HYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQK 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSS T
Sbjct: 179 DGGTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSPT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KEKLVSS+V+  VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRKG
Sbjct: 239 KEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKG 298

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           VLDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERA
Sbjct: 299 VLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERA 358

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           RFD+MLSS E+GTLITALGTGIG+D ++ +KLRY
Sbjct: 359 RFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|84310498|gb|ABC55397.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
 gi|84310502|gb|ABC55399.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
 gi|84310504|gb|ABC55400.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
 gi|84310510|gb|ABC55403.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 390

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 194/392 (49%), Positives = 276/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF     ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVIHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  +    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  L  +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVV 390


>gi|157073795|dbj|BAF79896.1| gyrase B [Methylobacterium mesophilicum]
          Length = 399

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 245/399 (61%), Positives = 309/399 (77%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALSS+LKLRI R G  + M F +G    PL + G      G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSFLKLRIWRNGMEHAMEFRHGDAVAPLEIVGPGEGRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y+GGIE
Sbjct: 61  TEVTFLPSTNTFTMIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEHKREELYYEGGIE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M SP+ ++  R+ I +++A+ WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPIEGMASPVVVRAEREGIRVEVALWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQIT Y + S  SK++K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQITGYADSSGVSKREKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENVLNEGLSTWLEENPQQARSVMGKVVLAASAREAARKARETVTRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+  KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|19909635|dbj|BAB87013.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
          Length = 390

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 255/392 (65%), Positives = 312/392 (79%), Gaps = 2/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALSS L LR+ R+G  + + F +G    PL V G AG   G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSRLLLRVWRDGKEHFIEFAHGEAVAPLAVVGDAGGKRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTF  S++ F+  ++++ TL+HRLREL+FLNS V I L D R    +   M Y+GG+ 
Sbjct: 61  TEVTFYASAETFTNVEYDFATLEHRLRELAFLNSGVNILLSDLRHGIEKREEMRYEGGVV 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLDR+KK ++  PI I    + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+
Sbjct: 121 EFVKYLDRNKKAIVPMPITILAEMNGITVECALWWNDSYHENVLCFTNNIPQRDGGTHLA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTRQ+  Y +    +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRGALTRQVNGYAD--VIAKKEKITLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVE+ +N+ L++W EEHP EAK IV KV++A+  R+AAR+AR+LTRRKG LDIASL
Sbjct: 239 EVRPVVENVINEALASWFEEHPAEAKTIVGKVVEAAAAREAARKARELTRRKGALDIASL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLS
Sbjct: 299 PGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S ++GTLITALGTGIG+D FDI+KLRYHKII+
Sbjct: 359 SDQVGTLITALGTGIGRDDFDISKLRYHKIIL 390


>gi|313574621|emb|CBX26163.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 273/392 (69%), Positives = 329/392 (83%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D  L V G     +G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAALSVIGEYEGRSG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFL S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+E
Sbjct: 61  TEVTFLASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELLYDGGLE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR KKPL+  P+ I+G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++
Sbjct: 121 AFVRYLDRAKKPLVDKPVAIRGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASL
Sbjct: 241 EVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS
Sbjct: 301 PGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITALGT IG+D F+ +KLRYHKIII
Sbjct: 361 SQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|304383905|ref|ZP_07366362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
           DSM 16973]
 gi|304334983|gb|EFM01256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
           DSM 16973]
          Length = 643

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 159/556 (28%), Positives = 255/556 (45%), Gaps = 55/556 (9%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADIIT 65
           Y+ D+I+ L  ++ V+ RP MYIG     S    G++ ++ EV+DN+IDE        I 
Sbjct: 9   YNDDNIRHLSDMEHVRTRPGMYIGRLGDGSLPEDGIYVLLKEVIDNSIDEFKMHAGKRID 68

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           + ++ +   TV D GRGIP        I A  +    L+ GGK++ K++K S GL+GVG+
Sbjct: 69  IDIDDNLRVTVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFKKSVGLNGVGL 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
             VNALS+  ++R  R+  +    F  G L      T  + +++GT V F P + +F   
Sbjct: 121 KAVNALSTRFEVRSYRDSQVRTAIFERGQLITD--TTTPSDDESGTLVAFTPDNTMFLNY 178

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+ D ++  LR  ++LN+ + I    +R           + G+E  +     +      
Sbjct: 179 RFHDDIVEDMLRNYTYLNTGLAIICNGRRI--------LSRNGLEDLLQDTMTN------ 224

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             +          I++A    + Y E    F N      GGTH S  +  + + I  +  
Sbjct: 225 DGLYPIVHLAADDIEIAFTHANQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAKTIREFAG 284

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-------VVES 358
           KS             D R G  + ++I + +P F SQTK KL S  +          V  
Sbjct: 285 KS---------FDSSDIRNGLVAAIAINVEEPMFESQTKIKLGSLTMAPDGISINKYVGD 335

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA------RRARDLTRRKGVLDIASLPG 412
           F+   L  +L ++P  A+ I+ KV +    R A        R R          +     
Sbjct: 336 FLKTELDNFLHKNPDIAEAILAKVQENERERKAMAGVTKLARERAKKANLHNRKLRDCRI 395

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
             +D  +   +++ +F+ EGDSA GS  + R    QA+  LRGK LN        +  ++
Sbjct: 396 HYSDVKDPRKEEACIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENE 455

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           E   L  AL    G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  P LI  G
Sbjct: 456 EFNLLQAALDIEDG-----LDTLRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIKKG 510

Query: 533 FLYIIKPPLYGITRGK 548
            +Y+++ PL+ +   +
Sbjct: 511 HVYVLQTPLFRVRNRR 526


>gi|19909561|dbj|BAB86976.1| DNA gyrase subunit B [Novospirillum itersonii]
 gi|19909563|dbj|BAB86977.1| DNA gyrase subunit B [Novospirillum itersonii]
          Length = 392

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 253/392 (64%), Positives = 310/392 (79%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS WL LRI R+G  +   F  G     L     A +  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLDLRIWRDGWEHYARFEGGDTVKHLERVRPAPDQKG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTF  S  IF++ +++++TL+HRLREL+FLNS V + L D R  EP+ +T  Y+GGIE
Sbjct: 61  TEVTFFASPSIFAITEYSFETLEHRLRELAFLNSGVTLVLTDARHGEPKSVTFHYEGGIE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLD+ ++PL + P+ + G RD I++D+++ W D YHEN LCFTNNIPQKDGGTHL+
Sbjct: 121 AFVKYLDKSRQPLQEKPVVMAGERDGITVDVSLEWTDAYHENTLCFTNNIPQKDGGTHLA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR ALTR +++Y ++S   KK+K    GDD REG T VLS+K+PDP+FSSQTKEKLVSS
Sbjct: 181 GLRGALTRTLSAYAQQSGLLKKEKVQPTGDDMREGMTCVLSVKVPDPKFSSQTKEKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR+VVE+ V + L+ WL+EHP EA+ I+ KV++A+  R+AARRAR+LTRRKG LDI+SL
Sbjct: 241 EVRTVVENVVAEKLAEWLDEHPSEARRIMGKVVEAAAAREAARRARELTRRKGALDISSL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC  RDP +SELF+VEGDSAGGSAKQGR R  QAILPL+GKILNVERARFDKMLS
Sbjct: 301 PGKLADCQNRDPAQSELFIVEGDSAGGSAKQGRDRGFQAILPLKGKILNVERARFDKMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEIGTLITA+GTGIG D F+I+KLRYHK+II
Sbjct: 361 SQEIGTLITAMGTGIGADDFNIDKLRYHKVII 392


>gi|126035326|gb|ABN72416.1| gyrase B subunit [Shigella dysenteriae]
 gi|126035328|gb|ABN72417.1| gyrase B subunit [Shigella dysenteriae]
 gi|126035338|gb|ABN72422.1| gyrase B subunit [Shigella flexneri]
          Length = 385

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 233/388 (60%), Positives = 298/388 (76%), Gaps = 4/388 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRF 59

Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV 
Sbjct: 60  WPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+
Sbjct: 118 YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 178 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKL
Sbjct: 238 AVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIII 502
            TLITALG GIG+D ++ +KLRYH III
Sbjct: 358 ATLITALGCGIGRDEYNPDKLRYHSIII 385


>gi|126035228|gb|ABN72367.1| gyrase B subunit [Escherichia coli]
          Length = 384

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 232/387 (59%), Positives = 297/387 (76%), Gaps = 4/387 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 238 KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHK 499
           E+ TLITALG GIG+D ++ +KLRYH 
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYHN 384


>gi|291513744|emb|CBK62954.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Alistipes shahii WAL 8301]
          Length = 626

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 165/607 (27%), Positives = 268/607 (44%), Gaps = 56/607 (9%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADIIT 65
           Y  D+I  L   + ++ RP MY+G     S     L+ +I EV+DN+IDE + G    I 
Sbjct: 15  YGDDAIVTLSPREHIRLRPGMYVGVVGDGSQPDEALYVLIKEVVDNSIDEFIMGAGRQID 74

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           +TL  D   TV D GRGIP         S A  +  +++ GGK+   ++K + GL+GVGV
Sbjct: 75  ITL-ADNVVTVRDYGRGIPL-------KSLAAAV-GQMNTGGKYGGDAFKKTVGLNGVGV 125

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
             VN LS     R  R+G    ++F  G+  +    +G      GT +++    +IF   
Sbjct: 126 KAVNMLSEEFTARSVRDGEARTVTFAKGLEVSDRWESG-VNEKNGTFISYRVDKEIFGEY 184

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            +N + ++ ++R  S+LN  + ++   K            K G+   V+           
Sbjct: 185 AYNLEYVEQKIRNYSYLNLGLTLNFNGKS--------YVSKNGLLDLVNDNMTEDPLYPP 236

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I + G      I++ +    GY E+   F N      GGTH + LR+A+ + +  +  
Sbjct: 237 --IHLTGED----IEVVITHGTGYGESYDSFVNGQHTTQGGTHQTALRAAVAKTVKEFYH 290

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE-------- 357
           K              D R    + +SIK+ DP F +Q K K  S EV   V         
Sbjct: 291 K---------DYDPSDIRTSIIAAISIKVTDPIFENQMKTKYGSKEVEPGVSVNNFVADF 341

Query: 358 --SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
               ++D L    E   +  + IV+   +        ++    T +K  L+   L     
Sbjct: 342 LTKHLDDYLHKHAETAQILQRKIVENEKE-RKAISGIQKKARETAKKVSLNNKKLRDCKI 400

Query: 416 DC--SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
                    ++S +F+ EG+SA GS  + R    QA+  LRGK LN        +  ++E
Sbjct: 401 HRTDRNELAEQSMIFITEGNSASGSITKSRDVRTQAVFSLRGKPLNCYGLTKKVVYENEE 460

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
              L  AL         D++ LRY+K++I TDADVDG HIR L++TFF +  P +I  G 
Sbjct: 461 FNLLQAALNI-----EEDMDNLRYNKVVIATDADVDGMHIRLLMMTFFLQFFPEVIRQGH 515

Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593
           L++++ PL+ +   K   Y   EE      + +  +          G IS ++ + FI +
Sbjct: 516 LFVLQTPLFRVRNKKETLYCYSEEERLK-AVARCGANAEITRFKGLGEISPDEFKEFIGE 574

Query: 594 ALKIDKL 600
            +++DK+
Sbjct: 575 NMRLDKV 581


>gi|281486953|gb|ADA71024.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 374

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 222/377 (58%), Positives = 285/377 (75%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V   L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSTRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+A R+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAVRKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|148611267|gb|ABQ95822.1| DNA gyrase subunit B [Acidiphilium sp. DX3]
 gi|148611269|gb|ABQ95823.1| DNA gyrase subunit B [Acidiphilium sp. DX5]
 gi|148611273|gb|ABQ95825.1| DNA gyrase subunit B [Acidiphilium sp. DX1-4]
 gi|148611275|gb|ABQ95826.1| DNA gyrase subunit B [Acidiphilium sp. DX1-7]
 gi|148611279|gb|ABQ95828.1| DNA gyrase subunit B [Acidiphilium sp. DX1-9]
 gi|148611281|gb|ABQ95829.1| DNA gyrase subunit B [Acidiphilium sp. DX1-10]
 gi|148611283|gb|ABQ95830.1| DNA gyrase subunit B [Acidiphilium sp. DX1-11]
 gi|148611289|gb|ABQ95833.1| DNA gyrase subunit B [Acidiphilium sp. DBS1]
 gi|148611294|gb|ABQ95835.1| DNA gyrase subunit B [Acidiphilium sp. DY3]
 gi|148611296|gb|ABQ95836.1| DNA gyrase subunit B [Acidiphilium sp. DY4]
 gi|148611298|gb|ABQ95837.1| DNA gyrase subunit B [Acidiphilium sp. GF3]
 gi|148611300|gb|ABQ95838.1| DNA gyrase subunit B [Acidiphilium sp. LY1]
 gi|148611304|gb|ABQ95840.1| DNA gyrase subunit B [Acidiphilium sp. SM1]
 gi|148611310|gb|ABQ95842.1| DNA gyrase subunit B [Acidiphilium sp. SB8]
          Length = 400

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 234/402 (58%), Positives = 297/402 (73%), Gaps = 9/402 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVG +VVNALS W+++RI R+G  + + F NG    PL V G++ + T
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT VTF PS+  F+  +F++   + RLREL+FLNS + I+L D+R    +E    Y+GG+
Sbjct: 61  GTSVTFRPSAATFTRTEFDFAIYERRLRELAFLNSGLTINLRDERHSAVQEAHFRYEGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
             FVS+LDR K  L   P+          I ++ A+ WND YHE +LCFTNNI Q+DGGT
Sbjct: 121 VEFVSWLDRAKTQLFSPPVTAFKDDAPGGIKVEFALAWNDTYHETMLCFTNNIVQRDGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G RSALTR ++ Y E          S+ G+D REG T+VLS+K+PDP+FSSQTK+KL
Sbjct: 181 HLAGFRSALTRVVSKYAESLGKKDS--LSLSGEDMREGLTAVLSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+ +V++ V D L  W E HP E ++I +KV+DA+  R+AAR+AR+LTRRKGVLDI
Sbjct: 239 VSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRKGVLDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+
Sbjct: 299 STLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 358

Query: 468 MLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMT 504
           ML S EIGTLITALGTGIG     Q  FDI+KLRYH+I+IMT
Sbjct: 359 MLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|261188733|ref|XP_002620780.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
 gi|239592012|gb|EEQ74593.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1758

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 152/702 (21%), Positives = 259/702 (36%), Gaps = 49/702 (6%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
            ++  Q L  L+ + KRP  YIG  +  +                      GL+ +  E+
Sbjct: 130 SSERYQKLTQLEHIIKRPDTYIGSIERSTNQMWVYNSESESMEFREVSYVPGLYKIFDEI 189

Query: 49  LDNAID-ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D    +   D I VT+N + G  +V +NGRGIP ++H  E +   E+I   L   
Sbjct: 190 LVNAADNRHNDKNMDEIRVTVNRESGEISVWNNGRGIPIEIHSREKVYIPELIFGHLLTS 249

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+   L          Y+ ++ + +          
Sbjct: 250 SNYNDDQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTDNMSKMGKPKITD 309

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
              D  T+VTF P    F +   + D    ++ R+ +L+     V + L   R P     
Sbjct: 310 CKGDDYTKVTFTPDFKKFGMDGIDDDFEALVKRRVYDLAGTCK-VTVKLNGSRVPVRNFK 368

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                       +      +   +    I     +   ++    +DG  + V  F N+I 
Sbjct: 369 QYMQMY----TNAIKKERGEEACRDKSEIITDNPDPRWEIGFAVSDGSFQQV-SFVNSIA 423

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG+H++ +   +  ++   V+K   +     ++     R      ++ ++ +P F+S
Sbjct: 424 TTSGGSHVNTVADQICNKLVEVVKKKNKTG---ATLKPAQIRNHIFVFVNSQIVNPAFTS 480

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE+L +   +   +  ++D     + +  +   I+      A  +   +   R     
Sbjct: 481 QTKEQLTTKPSQFGSKCVLSDDFLKKILKTQVMENIMHFAEKKADQILKKSDGNRRSRMN 540

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
              L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+L
Sbjct: 541 NPKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLL 594

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A  D++  + EI  +   LG    ++  D   LRY  ++IMTD D DG+HI+ LL+
Sbjct: 595 NVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLI 654

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            FF    PSL+      I    P+  + +G        +           L         
Sbjct: 655 NFFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKSFFTMQEYETWLEIHGHDKRW 714

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
            K            D  +    L +     H     E  +I   F+ +   E       +
Sbjct: 715 EKKYYKGLGTSTTDDAEIYFRDLDRHLKQFHVMRDHEAELIDLAFSKKKADER-KEWLRQ 773

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                       E ++   IN   IL            V++G
Sbjct: 774 FKPGTFLDHTTEEITYTDFINKELILFSMADNIRSIPSVIDG 815


>gi|153830856|ref|ZP_01983523.1| DNA gyrase subunit B [Vibrio cholerae 623-39]
 gi|148873666|gb|EDL71801.1| DNA gyrase subunit B [Vibrio cholerae 623-39]
          Length = 301

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 8/300 (2%)

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTFF+RQMP LI  G++YI +PPLY + +GK  QY+KDEE++  Y +  ++   
Sbjct: 2   HIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDGA 61

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQE 629
                     ++   L   +       KL++     +    + + +     N E  +D+ 
Sbjct: 62  ELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIYVPRINAELCADKA 121

Query: 630 INVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFS 684
              +   +L  +LN     + +       +  +N     V+    GV  +++L    I S
Sbjct: 122 AVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYLPKVQVRTHGVTHEYLLSADLINS 181

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
                    S  ++        +        I+   + LD +    R+G+S+QRYKGLGE
Sbjct: 182 KEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAAALDWLIKESRRGLSIQRYKGLGE 241

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           MN  QLWETT++P+TR +++V I DA  AD+LF+ LMGD+VEPRR FI+ N+L    LD+
Sbjct: 242 MNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETNALKVANLDV 301


>gi|126035206|gb|ABN72356.1| gyrase B subunit [Escherichia coli]
 gi|126035320|gb|ABN72413.1| gyrase B subunit [Shigella boydii]
          Length = 384

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 232/386 (60%), Positives = 297/386 (76%), Gaps = 4/386 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 238 KSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYH 498
           E+ TLITALG GIG+D ++ +KLRYH
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYH 383


>gi|225678456|gb|EEH16740.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
          Length = 1788

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 145/685 (21%), Positives = 256/685 (37%), Gaps = 43/685 (6%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
            ++  Q L  L+ + KRP  YIG  +  +                      GL+ +  E+
Sbjct: 138 SSERYQKLTQLEHIIKRPDTYIGSIERSTSQMWVYNSESEAMEYREVSYVPGLYKIFDEI 197

Query: 49  LDNAIDE-SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D    +   D I VTLN + G  +V +NGRGIP ++H +E +   E+I   L   
Sbjct: 198 LVNAADNKHNDKNMDEIRVTLNRESGEISVWNNGRGIPIEIHAKEKLYIPELIFGHLLTS 257

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+   +     R+   Y+ ++ N +          
Sbjct: 258 SNYNDMQQKVTGGRNGYGAKLCNIFSTEFTIETADSRQNKKYKQTWTNNMSKMGKAKITD 317

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
                 T+VTF P    F ++  + D      R +  +  + ++ ++             
Sbjct: 318 CKGQDYTKVTFTPDFKKFGMEGVDDDFEALVKRRVYDMAGTCKV-IVKLNGSRIPVRNFK 376

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
               +       +R ++   +    I     +   ++    +DG  + V  F N+I    
Sbjct: 377 QYMAMYTNAIKKERGEEAA-KDKTEILLDNPDPRWEVGFAVSDGSFQQV-SFVNSIATTS 434

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG+H++ +   +  ++   V+K   +     S+     R      ++ ++ +P F+SQTK
Sbjct: 435 GGSHVNAVADQICNRLAETVKKRNKTG---ASLKPAQIRNHIFVFVNSQIVNPAFTSQTK 491

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L +   +   +  +++     + +  +   I+      A  +   +   R        
Sbjct: 492 EQLTTKPSQFGSKIVLSEEFLKKVIKTQVMENIMHFAEKKADQILKKSDGNRRSRMNNPK 551

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVE 461
           L  A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV 
Sbjct: 552 LTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKMLNVR 605

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            A  D++  + EI  +   LG    ++  D   LRY  ++IMTD D DG+HI+ LL+ F 
Sbjct: 606 DASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINFL 665

Query: 522 FRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
               PSL+      I    P+  + +G     +  +                      K 
Sbjct: 666 QVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPIISKSFFTMQEYETWKEIHGHDRRWEKK 725

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                      D  +    L K     H     E  +I   F+ +   E       +   
Sbjct: 726 YYKGLGTSTTEDAEIYFQDLDKHLKQFHVMQDNEAQLIDLAFSKKKADER-KEWLRQFKP 784

Query: 641 RLNFIAEKSEKSWHGSINNSDILVK 665
                    E ++   IN   IL  
Sbjct: 785 GTFLDHTTEEITYTDFINKELILFS 809


>gi|297614602|gb|ADI48603.1| DNA gyrase subunit B [Shewanella algae]
          Length = 385

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 225/388 (57%), Positives = 297/388 (76%), Gaps = 4/388 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G    P+   G A   TGTE+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEAT-KTGTEI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS + F+  +F+Y+ L  R+RELSFLNS V I LID+R  +       Y+GGI+AFV
Sbjct: 60  RFWPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLIDERDNKD--EFFHYEGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            YL+R+K P+ +        RD+ I++++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 EYLNRNKTPVNKDVFHFSQERDDGITVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPG
Sbjct: 238 KGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           E+ TLITALG GIG+D +D  K RYH I
Sbjct: 358 EVATLITALGCGIGRDEYDPEKTRYHYI 385


>gi|19909535|dbj|BAB86963.1| DNA gyrase subunit B [Caulobacter vibrioides]
          Length = 402

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 259/402 (64%), Positives = 311/402 (77%), Gaps = 10/402 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT- 169
           Q SYKVSGGLHGVGVSVVNALS WL+L I R G +++M F  G     L VTG +   T 
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTE 60

Query: 170 ---------GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                    GTEVTF PS D F+  +F+  TL+HRLREL+FLNS V I   D R  EP E
Sbjct: 61  GPKAGETLTGTEVTFFPSKDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWE 120

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
             +FY+GGIEAFV +LD+ K PL+++PI ++G +D + IDLA+ WND YHE +LCFTNNI
Sbjct: 121 EKLFYEGGIEAFVRHLDKAKTPLLKAPIAVKGVKDKVEIDLALWWNDSYHEQMLCFTNNI 180

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHLS  R+ALTR ITSY E S   KK+K S+ G+D REG T VLS+K+PDP+FS
Sbjct: 181 PQRDGGTHLSAFRAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFS 240

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR  VE  V++GLS W EEHP EAK IV K+ +A+  R+AAR+AR+LTR
Sbjct: 241 SQTKDKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTR 300

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  LDI SLPGKLADCSERDP KSE+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNV
Sbjct: 301 RKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNV 360

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ERARFDKMLSS +IGTLITALG GIG+D F+ +K+RYHKI++
Sbjct: 361 ERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVL 402


>gi|11078707|dbj|BAB17358.1| DNA gyrase subunit B [Pseudomonas alcaligenes]
          Length = 389

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 226/392 (57%), Positives = 297/392 (75%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+R G I+E ++++G+   PL   G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAPVGDSE-GTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG++
Sbjct: 60  TQIHFKPSDDTFKNIHFSWDILAKRIRELSFLNSGVGIVLRDERSGKE--ELFKYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K  + Q      Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNCQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRSALTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +      +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMGKYFGDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SSQE+GTLITALG GIG++ ++I+KLRYH II
Sbjct: 358 SSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|4514429|dbj|BAA75413.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514431|dbj|BAA75414.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 389

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 232/392 (59%), Positives = 286/392 (72%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I R G I+E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIHRAGQIHEQEYAHGDPQYPLKVVGET-DTSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   F+ D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERV--NLEHIYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L         + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNDIFHFTTDADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+GTLITALG GIG++ ++ +KLRYHKIII
Sbjct: 358 SQEVGTLITALGCGIGREEYNPDKLRYHKIII 389


>gi|110430606|gb|ABG73430.1| DNA topoisomerase II [Pleurotus ostreatus]
          Length = 1571

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 149/699 (21%), Positives = 285/699 (40%), Gaps = 60/699 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------G 40
               + +Y     Q L  L+ + KRP  YIG  +  +                      G
Sbjct: 99  KKTASETY-----QKLSQLEHILKRPDSYIGSIETITQAMWIFDADAKRMVHREVKYVPG 153

Query: 41  LHHMIYEVLDNAIDESLEGYA-DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEV 98
              ++ E+L NA D  +     D + VT++++  + +V +NG+GIP ++H  E +   E+
Sbjct: 154 FFKIVDEILVNAADNKVNDPTMDALKVTIDIENCTISVYNNGKGIPVEMHTTEKMYIPEL 213

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL- 155
           I   L +   ++    K++GG +G G  + N  S    +    K  G  Y  ++   +  
Sbjct: 214 IFGHLLSSSNYDDDEKKLTGGRNGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNVTQ 273

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLID 212
                +T ++ N+  T VTF P    F +   + DT   L+ R+ +++     V++ L  
Sbjct: 274 VGKAKITKNSRNEEYTRVTFKPELTRFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNG 333

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R              IEA  +    +     Q+   +   + +   ++A   +DG  + 
Sbjct: 334 ERLKIKTFKQYVEM-YIEAATAGAKENSGGAAQAKPTVIYEQISPRWEVAFATSDGTFQQ 392

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N+I   +GGTH++ +   L++ I +++ K   +   K +      +      ++ 
Sbjct: 393 V-SFANSIATIEGGTHVNYIADQLSKSIIAHIAKKNKAATVKPAQ----VKNHMWIFVNA 447

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
            + +P F SQTKE L     +      +++     +++       I+ +VL+ +  +   
Sbjct: 448 LIENPTFDSQTKETLTLPAGKFGSRPALSEEFMKKVQKS-----SIIDQVLNWAKFKADQ 502

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSREN 447
           +  +    ++  L   +      +   ++ +K  L L EGDSA      G A  GR   N
Sbjct: 503 QIKKTDGSKRNRLTGMAKLSDANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRD--N 560

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
             + PLRGK+LNV  AR D+++ ++EI  +   +G    ++  +++ LRY +++IMTD D
Sbjct: 561 FGVFPLRGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQD 620

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
            DG+HI+ LL+ F     PSL+      +    P+  +T+G   +        E +L   
Sbjct: 621 HDGSHIKGLLINFLDHFYPSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEET 680

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
             S++      +          +  D      ++ K   P       E+A+I   F+ + 
Sbjct: 681 PDSKK-----WTAKYYKGLGTSSDADAREYFSQMGKHMIPFATMEDEERALIDLAFSKKK 735

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             +       +            E  +   IN   IL  
Sbjct: 736 ADDR-KEWQRQFKPGTYLDHNIDEIPFTDFINKELILFS 773


>gi|12644437|sp|Q43907|GYRB_ACIBA RecName: Full=DNA gyrase subunit B
 gi|4514405|dbj|BAA75401.1| DNA gyrase subunit B [Acinetobacter baumannii]
          Length = 388

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 232/391 (59%), Positives = 290/391 (74%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSAETFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKNHLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG++ ++ +KLRYHKII
Sbjct: 358 SQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|208609661|dbj|BAG72206.1| gyrase B [Methylobacterium sp. RB978]
          Length = 395

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 259/395 (65%), Positives = 312/395 (78%), Gaps = 3/395 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+WL+LRI R G  + M F +G    PL V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTWLRLRIWRAGKEHTMEFRHGDAVAPLAVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS D F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+E
Sbjct: 61  TEVTFLPSPDTFTMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKRDELVYEGGVE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR K+  +++PI ++  RD I +++A+ WND +HENVLCFTNNIPQ+DGGTHL+
Sbjct: 121 AFVRYLDRAKQAQIEAPIVLRQERDGIGVEVALWWNDTFHENVLCFTNNIPQRDGGTHLA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQIT Y E S  +KK+K ++ G+DCREG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQITGYAEASGVTKKEKVALTGEDCREGLTAVVSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  +N  L  WLEEHP EA+II  KV  A+  R+AAR+ARDLT RKG LDIASL
Sbjct: 241 EVRPAVEGVMNATLGTWLEEHPNEARIIAAKVALAAAAREAARKARDLTTRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVERAR DKMLS
Sbjct: 301 PGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARLDKMLS 360

Query: 471 SQEIGTLITALGTGIGQ---DSFDINKLRYHKIII 502
           SQEIGTLITALGTGIG+    +F+ +KLRYH+III
Sbjct: 361 SQEIGTLITALGTGIGRDGAHAFNPDKLRYHRIII 395


>gi|154270939|ref|XP_001536323.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
 gi|150409546|gb|EDN04990.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
          Length = 1808

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 146/688 (21%), Positives = 257/688 (37%), Gaps = 49/688 (7%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
           +++  Q L  L+ + KRP  YIG  +  +                      GL+ +  E+
Sbjct: 134 NSEKYQKLTQLEHIIKRPDTYIGSIERSTNQMWVYNMQSGSMEFRVVSYVPGLYKIFDEI 193

Query: 49  LDNAIDE-SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D    +   D I VTL+ + G  +V +NGRGIP ++H +E +   E++   L + 
Sbjct: 194 LVNAADNKHSDKNMDEIRVTLDRESGQISVWNNGRGIPIEIHAKEKVYIPELVFGHLLSS 253

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGS 164
             ++    KV+GG +G G  + N  S+   L          Y+ ++ + +          
Sbjct: 254 SNYDDNQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTDNMSKMGKPKITD 313

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
              D  T+VTF P    F +   + D    ++ R+ +L+     V + L   R P     
Sbjct: 314 CKGDDYTKVTFTPDFKKFGMDGIDDDFEALVKRRVYDLAGTCK-VTVKLNGSRIPIRNFK 372

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                       +      +   +    I     +   ++    +DG  + V  F N+I 
Sbjct: 373 QYMQMY----TNAIKKERGEEAAKDKSEIITDNPDPRWEIGFAVSDGSFQQV-SFVNSIA 427

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG+H++ +   +  ++   V+K   +     ++     R      ++ ++ +P F+S
Sbjct: 428 TTSGGSHVNSVADQICNKLVDAVKKKNKTG---ATLKPAQIRNHIFVFVNAQIVNPAFTS 484

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE+L +   +   +  ++D     + +  +   I+      A  +       R     
Sbjct: 485 QTKEQLTTKPSQFGSKCVLSDEFLKKILKTQVMENILHFAEKKADQILKKTDGNRRSRMN 544

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
              L  A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+L
Sbjct: 545 NPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLL 598

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A  D++  + EI  +   LG    ++  D   LRY  ++IMTD D DG+HI+ LL+
Sbjct: 599 NVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLI 658

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            FF    PSL+      I    P+  + +G        +                     
Sbjct: 659 NFFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKVFFTMQEYKTWQEIHGHDKRW 718

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
            K         +  D  +    L K     H     E  +I   F+ +   E       +
Sbjct: 719 EKKYYKGLGTSSTDDAEIYFRDLDKHLKQFHVMQDHEAELIDLAFSKKKADER-KEWLRQ 777

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVK 665
                       E ++   +N   IL  
Sbjct: 778 FKPGTFLDHTTDEITYTDFVNKELILFS 805


>gi|84310508|gb|ABC55402.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 390

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 193/392 (49%), Positives = 275/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF     ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVIHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  +    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  L  +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALG GIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGPGIGED-FNLEKARYHKVV 390


>gi|306517913|emb|CBL53380.1| gyrase B subuni [Photobacterium halotolerans]
          Length = 385

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 225/388 (57%), Positives = 293/388 (75%), Gaps = 4/388 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I R G+I++  +  G    PL V G + + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSDKLELTIHRHGHIHQQIYHLGEPQAPLGVVGDS-DRTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F PS  IF+   F+Y+ L  RLRELSFLNS V I L D+R  +       Y+GGI A
Sbjct: 60  RIRFWPSDTIFTDTTFHYEILAKRLRELSFLNSGVSIKLSDERDGKQ--DHFMYEGGIRA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+R+K P+          R++ IS+++AM+WND + EN+ CFTNNIPQ+DGG+HL+
Sbjct: 118 FVEHLNRNKTPIHPKAFHFAYEREDGISVEVAMQWNDSFQENIYCFTNNIPQRDGGSHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + ++++    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRGALTRTLNNFMDAEGYTKKAKVATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VES + + LS +L E+P +AKI+  K++DAS  R+AARRAR++TRRKG LD+A L
Sbjct: 238 EVKPAVESAMGEKLSEYLLENPTDAKIVCGKIIDASRAREAARRAREMTRRKGALDLAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYH 498
           SQE+ TLITA+G GIG+D ++ +KLRYH
Sbjct: 358 SQEVATLITAMGCGIGRDEYNPDKLRYH 385


>gi|116488807|gb|ABJ98769.1| DNA gyrase B [Pseudoruegeria aquimaris]
          Length = 382

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 248/382 (64%), Positives = 301/382 (78%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS WL+LRI R+G  +   F  G     L V G  G+ TGTEV 
Sbjct: 1   QVSGGLHGVGVSVVNALSDWLELRIWRDGKEHFARFERGETVKHLEVVGECGDRTGTEVR 60

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F+ S+D FS  D+++ TL++RLREL+FLNS V+I L D+R  EP    ++Y+GG++ FV 
Sbjct: 61  FMASTDTFSNLDYSFKTLENRLRELAFLNSGVRIILEDERPAEPLRSELYYEGGVQEFVR 120

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLDRHK   M+ PI + G RD I I++AM WND YHE VL FTNNIPQ+DGGTHL+G R 
Sbjct: 121 YLDRHKTSTMEDPIFVTGERDGIGIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRG 180

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I +Y + S  +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR 
Sbjct: 181 ALTRTINNYAQSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRP 240

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +N+ LS W EEHP EAK IV K+++A++ R+AAR+AR+LTRRK  +D+ASLPGKL
Sbjct: 241 AVEGLMNEKLSEWFEEHPNEAKQIVGKIIEAALAREAARKARELTRRKTAMDVASLPGKL 300

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP KSELFLVEGDSAGGSAKQGRSR NQA+LPLRGKILNVERARFD+MLSSQEI
Sbjct: 301 ADCQEKDPGKSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLSSQEI 360

Query: 475 GTLITALGTGIGQDSFDINKLR 496
           GTLITALGTGIG+D F+I KLR
Sbjct: 361 GTLITALGTGIGRDEFNIEKLR 382


>gi|19909593|dbj|BAB86992.1| DNA gyrase subunit B [Caulobacter vibrioides]
          Length = 402

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 253/402 (62%), Positives = 307/402 (76%), Gaps = 10/402 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT- 169
           Q SYKVSGGLHGVGVSVVNALS WL+L I R G +++M F  G     L VTG +   T 
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTE 60

Query: 170 ---------GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                    GTEVTF PS + F+  +F+  TL+HRLREL+FLNS V I   D R  EP E
Sbjct: 61  GPKAGETLTGTEVTFFPSKETFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDAEPWE 120

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
             + Y GGIEAFV +LD+ K PL+++PI ++G +D + +DLA+ WND YHE +LCFTNNI
Sbjct: 121 EKLHYDGGIEAFVRHLDKVKTPLLKAPISVRGVKDKVEVDLALWWNDSYHEQMLCFTNNI 180

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHLS  R+ALTR IT Y E S   KK+K S+ G+D REG T VLS+K+PDP+FS
Sbjct: 181 PQRDGGTHLSAFRAALTRIITGYAESSGILKKEKVSLGGEDAREGLTCVLSVKVPDPKFS 240

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR  VE  V +GL+ W EEHP EA+ IV K+ +A+  R+AAR+AR+LTR
Sbjct: 241 SQTKDKLVSSEVRPAVEGLVQEGLATWFEEHPNEARAIVSKIAEAAAAREAARKARELTR 300

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  LDI SLPGKLADCSERDP KSE+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNV
Sbjct: 301 RKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNV 360

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ERARFDKMLSS +IGTLITALG GIG+D F+ +K+RYHKI++
Sbjct: 361 ERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVL 402


>gi|33590360|gb|AAQ22720.1| DNA gyrase subunit B [Photorhabdus temperata subsp. temperata]
          Length = 383

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 226/386 (58%), Positives = 297/386 (76%), Gaps = 4/386 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    YKGGI
Sbjct: 60  TRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYKGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV +L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR + SY++K   +KK K S  GDD R+G  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDARQGLVAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKL 495
           SSQE+ TLITALG GIG+D ++ +KL
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKL 383


>gi|23978230|dbj|BAC21111.1| DNA gyrase B subunit [Anabaena variabilis]
          Length = 396

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 183/395 (46%), Positives = 260/395 (65%), Gaps = 7/395 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+IDE+L GY   I V +N DGS  V+D+GRGIP D H   G SA 
Sbjct: 2   GPRGLHHLVYEVVDNSIDEALAGYCTHIEVEINADGSVAVTDDGRGIPIDTHSRTGKSAL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E +MT LHAGGKF    YKVSGGLHGVG+SVVNALS  +++ + R+  ++   +  G+  
Sbjct: 62  ETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHTQRYERGVPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L+        TGT VTF P + IF+   +F+Y T+  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELITNPYKEARTGTSVTFKPDTQIFTNSIEFDYITISGRLRELAYLNAGVKITFTDNRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S  P+  +  YKGGI+ +++Y++R K+PL +  I +QG R+N+ I+++++W  D Y
Sbjct: 182 ELLKSDTPKVESYEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERNNVQIEVSLQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K+ + ++ G+  REG T+V
Sbjct: 242 TDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNTIARKRNKIKEHEPNLSGEHVREGLTAV 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QT+ KL ++EVR +V+S V + L+ +LE HP  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTQTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIADSILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           +AAR AR+L RRK VL+ + LPGKLADCS RDP +
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDPSE 396


>gi|19909559|dbj|BAB86975.1| DNA gyrase subunit B [Pseudorhodobacter ferrugineus]
          Length = 397

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 241/397 (60%), Positives = 304/397 (76%), Gaps = 6/397 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGVSVVNALS WL+LR+ R    Y   F NG     +   G A  + GT
Sbjct: 1   NAYKVSGGLHGVGVSVVNALSDWLELRVWRNDKEYFARFENGDCVEHVREVGPAPGEKGT 60

Query: 172 EVTFLPSSDI------FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           EV F+ S+        FS  ++++ TL++RLREL+FLNS  +I +ID+R  EP +  +FY
Sbjct: 61  EVRFMASAKTNRPDGTFSDLEYSFKTLENRLRELAFLNSGARIIVIDERPAEPLQTELFY 120

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  +V YLDR K  +M  PI I G +  I +++AM WND YHENVL FTNNIPQ+DG
Sbjct: 121 EGGVREYVKYLDRSKTSIMPEPIYIIGEKGGIVVEVAMWWNDSYHENVLPFTNNIPQRDG 180

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR ALTR I +Y + +  +KK+K    GDD REG T VLS+K+PDP+FSSQTK+
Sbjct: 181 GTHLAGLRGALTRTINNYAQSTGIAKKEKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKD 240

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR+ VE  VN+ L+ W EE+P  A+IIV K+++A++ R+AAR+ARDLTRRK  L
Sbjct: 241 KLVSSEVRAAVEGMVNEKLAEWFEENPSIARIIVGKIIEAALAREAARKARDLTRRKSPL 300

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DI++LPGKLADC E+D  K+ELFLVEGDSAGGSAKQGRSR+NQA+LPL+GKILNVERARF
Sbjct: 301 DISNLPGKLADCQEKDASKAELFLVEGDSAGGSAKQGRSRQNQAVLPLKGKILNVERARF 360

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D+ML SQEIGTLITA+GTGIG+D F++ KLRYHKI+I
Sbjct: 361 DRMLGSQEIGTLITAMGTGIGRDEFNLKKLRYHKIVI 397


>gi|126035306|gb|ABN72406.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|126035314|gb|ABN72410.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 383

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 231/385 (60%), Positives = 297/385 (77%), Gaps = 4/385 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVR 59

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV
Sbjct: 60  FWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 118 EYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGK
Sbjct: 238 SAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 298 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 357

Query: 474 IGTLITALGTGIGQDSFDINKLRYH 498
           + TLITALG GIG+D ++ +KLRYH
Sbjct: 358 VATLITALGCGIGRDEYNPDKLRYH 382


>gi|1049326|gb|AAB51450.1| DNA gyrase beta subunit [Caulobacter crescentus CB15]
          Length = 212

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 119/195 (61%), Positives = 142/195 (72%), Gaps = 10/195 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+
Sbjct: 17  MTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 76

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V LN DGS TV+D+GRGIP D+H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGL
Sbjct: 77  ATKVQVILNADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 136

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND----------TG 170
           HGVGVSVVNALS WL+L I R G +++M F  G     L VTG +             TG
Sbjct: 137 HGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTG 196

Query: 171 TEVTFLPSSDIFSVQ 185
           TEVTF PS D F+  
Sbjct: 197 TEVTFFPSKDTFAFI 211


>gi|259121545|gb|ACV92071.1| DNA gyrase subunit B [Bacillus sp. fiply 3A]
          Length = 389

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 194/391 (49%), Positives = 275/391 (70%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF     ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  +    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  L  +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           S+ E+ ++ITALGTGIG+D F++ K RYHK+
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKV 389


>gi|332800605|emb|CBY89792.1| GyrB protein [Flavobacterium succinicans]
          Length = 405

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 180/399 (45%), Positives = 256/399 (64%), Gaps = 7/399 (1%)

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGI 154
            EV+MT++ AGGKF++ SYKVSGGLHGVGVS VNALSS L+  +   +G +YE  +  G 
Sbjct: 1   LEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSSHLRATVHSSDGKVYEQEYERGK 60

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDK 213
              P+   G      GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DK
Sbjct: 61  ALYPVKQIGDTT-KRGTIVTFYPDPTIFTQTTEYSYDTLSARMRELSFLNKGISITFTDK 119

Query: 214 RSPEPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           R  +              G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y
Sbjct: 120 REVDKDGNFLGEVFHSTEGLKEYIRYLDGNREPIIGHVISMDHEKGEIPVEVALIYNTSY 179

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            EN+  + NNI   +GGTHL G RS LTR +  Y + S    K K  + GDD REG T++
Sbjct: 180 SENIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLKFEITGDDFREGLTAI 239

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +A+II++KV+ A+  R
Sbjct: 240 ISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPNDARIIIQKVILAAQAR 299

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AA++AR++ +RK V+    LPGKL+DCSE+DP + E++LVEGDSAGG+AKQGR R  QA
Sbjct: 300 HAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGGTAKQGRDRAFQA 359

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           ILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 360 ILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTE 398


>gi|308153066|dbj|BAJ22122.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
          Length = 390

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 193/393 (49%), Positives = 277/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     +++DTL  R+REL+FLN S+++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRSIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ T+ITA+GT IG D FDI K RYHK+II
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHKVII 390


>gi|307939300|gb|ADN95841.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 427

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 200/425 (47%), Positives = 282/425 (66%), Gaps = 21/425 (4%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF++ SYKVSGGLHGVGV  VNALS+ LK+ ++R G+ YE  +  GI    +
Sbjct: 4   MTVLHAGGKFDKGSYKVSGGLHGVGVXCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 63

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---- 215
              G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R     
Sbjct: 64  KEVGLSE-EHGTEVQFLPDASIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLEG 122

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
              R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV 
Sbjct: 123 GVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVY 182

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+
Sbjct: 183 SYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKV 242

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+
Sbjct: 243 QEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARK 302

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLR
Sbjct: 303 AKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLR 362

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLRYHK 499
           GKILNVE+A+  ++L ++EI  +ITALG                G      + +KLRYHK
Sbjct: 363 GKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSKLRYHK 422

Query: 500 IIIMT 504
           +IIMT
Sbjct: 423 VIIMT 427


>gi|41387058|gb|AAS01485.1| GyrB [Bacillus sp. H-13]
 gi|41387066|gb|AAS01488.1| GyrB [Bacillus thuringiensis serovar aizawai]
          Length = 390

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 192/393 (48%), Positives = 277/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ T+ITA+GT IG D FDI K RYHK+II
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHKVII 390


>gi|9971287|dbj|BAB12461.1| DNA gyrase B subunit [Oceanospirillum maris]
 gi|9971289|dbj|BAB12462.1| DNA gyrase B subunit [Oceanospirillum maris]
          Length = 386

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 225/388 (57%), Positives = 293/388 (75%), Gaps = 3/388 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L + R G ++E  +++G+   PL V G + + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLTLTVWRSGKLHEQVYVHGVPQTPLRVIGDS-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE  F PS + F+  +F+YD L  RLRELSFLNS V I L+D+RS   R     Y+GG+ 
Sbjct: 60  TETRFHPSPETFTNVEFHYDILAKRLRELSFLNSGVSIILLDERSG--RTDNFKYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV+YL+++K  L           D  ++++A++WN+ Y EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVTYLNQNKTALNDVFHFTSEREDGTTVEVALQWNESYQENIYCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+E+    KKDK +  G+D REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRTLNTYIEQDPKVKKDKANTSGEDAREGLTAIVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L+E P EAK IV K+LDA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGRLFSDYLQEKPNEAKAIVNKMLDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYH 498
           S E+GTLITA+G GIG++ F+ +KLRYH
Sbjct: 358 SVEVGTLITAMGCGIGREEFNPDKLRYH 385


>gi|41387051|gb|AAS01482.1| GyrB [Bacillus sp. H-09]
 gi|41387056|gb|AAS01484.1| GyrB [Bacillus sp. H-12]
 gi|237502649|gb|ACQ94973.1| DNA gyrase subunit B [Brevibacillus brevis]
          Length = 390

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 192/393 (48%), Positives = 276/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ T+ITA+GT IG D FDI K RYHK+II
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHKVII 390


>gi|11078715|dbj|BAB17362.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 388

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 224/391 (57%), Positives = 297/391 (75%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ 
Sbjct: 60  TQIHFKPSAETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV+YL+ +K P+ Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+
Sbjct: 118 AFVAYLNTNKTPVNQVFHFNIQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + SY+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGRHFADFLLENPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAI PL+GKILNVE+ARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAIFPLKGKILNVEKARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG+D ++I+KLRYH II
Sbjct: 358 SQEVGTLITALGCGIGRDEYNIDKLRYHNII 388


>gi|33590320|gb|AAQ22700.1| DNA gyrase subunit B [Photorhabdus temperata subsp. khanii NC19]
          Length = 381

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 227/384 (59%), Positives = 297/384 (77%), Gaps = 4/384 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    YKGGI+AF
Sbjct: 60  RFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYKGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEFLNKNKTPIHPNVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 238 KTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLR 496
           E+ TLITALG GIG+D ++ +KLR
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLR 381


>gi|239610333|gb|EEQ87320.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ER-3]
          Length = 1804

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 152/702 (21%), Positives = 259/702 (36%), Gaps = 49/702 (6%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
            ++  Q L  L+ + KRP  YIG  +  +                      GL+ +  E+
Sbjct: 130 SSERYQKLTQLEHIIKRPDTYIGSIERSTNQMWVYNSESESMEFREVSYVPGLYKIFDEI 189

Query: 49  LDNAID-ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D    +   D I VT+N + G  +V +NGRGIP ++H  E +   E+I   L   
Sbjct: 190 LVNAADNRHNDKNMDEIRVTVNRESGEISVWNNGRGIPIEIHSREKVYIPELIFGHLLTS 249

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+   L          Y+ ++ + +          
Sbjct: 250 SNYNDDQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTDNMSKMGKPKITD 309

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
              D  T+VTF P    F +   + D    ++ R+ +L+     V + L   R P     
Sbjct: 310 CKGDDYTKVTFTPDFKKFGMDGIDDDFEALVKRRVYDLAGTCK-VTVKLNGSRVPVRNFK 368

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                       +      +   +    I     +   ++    +DG  + V  F N+I 
Sbjct: 369 QYMQMY----TNAIKKERGEEASRDKSEIITDNPDPRWEIGFAVSDGSFQQV-SFVNSIA 423

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG+H++ +   +  ++   V+K   +     ++     R      ++ ++ +P F+S
Sbjct: 424 TTSGGSHVNTVADQICNKLVEVVKKKNKTG---ATLKPAQIRNHIFVFVNSQIVNPAFTS 480

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE+L +   +   +  ++D     + +  +   I+      A  +   +   R     
Sbjct: 481 QTKEQLTTKPSQFGSKCVLSDDFLKKILKTQVMENIMHFAEKKADQILKKSDGNRRSRMN 540

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
              L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+L
Sbjct: 541 NPKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLL 594

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A  D++  + EI  +   LG    ++  D   LRY  ++IMTD D DG+HI+ LL+
Sbjct: 595 NVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLI 654

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            FF    PSL+      I    P+  + +G        +           L         
Sbjct: 655 NFFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKSFFTMQEYETWLEIHGHDKRW 714

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
            K            D  +    L +     H     E  +I   F+ +   E       +
Sbjct: 715 EKKYYKGLGTSTTDDAEIYFRDLDRHLKQFHVMRDHEAELIDLAFSKKKADER-KEWLRQ 773

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                       E ++   IN   IL            V++G
Sbjct: 774 FKPGTFLDHTTEEITYTDFINKELILFSMADNIRSIPSVIDG 815


>gi|12644439|sp|Q44065|GYRB_ACIHA RecName: Full=DNA gyrase subunit B
 gi|4514419|dbj|BAA75408.1| DNA gyrase subunit B [Acinetobacter haemolyticus]
          Length = 388

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 231/391 (59%), Positives = 287/391 (73%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L I R G  ++  + +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQEHQQEYHHGDPQYPLRVIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R           +GG+ 
Sbjct: 60  TIVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVNLENVYDY--EGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + IS+++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVRYINEGKTHLNEIFHFTTDADNGISVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K  V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVVVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG++ ++ +KLRYHKII
Sbjct: 358 SQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|110612681|gb|ABG78303.1| GyrB [uncultured bacterium]
          Length = 396

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 186/401 (46%), Positives = 260/401 (64%), Gaps = 7/401 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+   YKVSGGLHGVGVSVVNALS  L L I + G ++  ++  G    PL V G     
Sbjct: 1   FDNNLYKVSGGLHGVGVSVVNALSETLYLEIHQNGLVHRQTYHKGAPVAPLAVFGETA-Q 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GT + F P   I     F+++TL HR RE++FLN  + I   D+ +   RE T  + GG
Sbjct: 60  RGTIIRFWPDMTIMETDQFSFETLAHRFREMAFLNPVLTIHFKDEET--LREETFHFDGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGT 287
           +++FVS+L+ +KKPL       +   D    ++A ++ +   +E VL F NNI  ++GGT
Sbjct: 118 VQSFVSFLNENKKPLHDVLFFRKNLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+ G R+A+T+ I  ++ +   +K ++    G+D REG T V+S+++P P+F  QTK KL
Sbjct: 178 HVQGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGLTGVISVRIPSPQFGGQTKAKL 235

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            SS V   +ESF+++ L    EE P  AK I +K +  +  R+AAR+A+DL +RK VL+ 
Sbjct: 236 GSSWVSGAMESFLSEALQEKFEEDPQTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEG 295

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FD 466
           ++LPGKLADC E DP K EL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE++R  +
Sbjct: 296 SNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIE 355

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           K +++ E+  LITA+G G+G + F   KLRYHKIIIMTDAD
Sbjct: 356 KFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDAD 396


>gi|19909609|dbj|BAB87000.1| DNA gyrase subunit B [Marinomonas communis]
          Length = 392

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 230/395 (58%), Positives = 291/395 (73%), Gaps = 6/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I++ G IYE S+ +G+   PL V G +    G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSETVTLTIRKNGKIYEQSYAHGVPQAPLAVVGESDGA-G 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   F YD L  RLRELSFLNS V I L D+RS +       Y+GG++
Sbjct: 60  TTVHFKPSAETFSNILFVYDILAKRLRELSFLNSGVAIHLKDERSGKE--EFFNYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRD---NISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           +FV +L+ +K P+      I    D    I++++A+ WN+G+ EN+ C+TNNIPQ+DGGT
Sbjct: 118 SFVEHLNTNKTPINDIFHFICQRDDLDDGIAVEVALPWNEGFQENIYCYTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R ALTR + +++E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KL
Sbjct: 178 HLAGFRGALTRTLNNFIESEGLAKKQKVATTGDDSREGLTAIVSVKVPDPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV++ VE  +    S +L E P EAKIIV K+LDA+  R+AARRARD+TRRKG LDI
Sbjct: 238 VSSEVKTAVEQEMAKRFSEYLLEKPNEAKIIVNKMLDAARAREAARRARDMTRRKGALDI 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDK
Sbjct: 298 AGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDK 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           MLSS E+GTLITALG GIG+D F+ +KLRYH I+I
Sbjct: 358 MLSSAEVGTLITALGCGIGRDEFNADKLRYHSIVI 392


>gi|82568133|dbj|BAE48501.1| DNA gyrase B [Laceyella putida]
          Length = 390

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 200/393 (50%), Positives = 281/393 (71%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            + YK SGGLHGVGVSVVNALS WL++ +KREG I+   +  G+ ++ L V G    +TG
Sbjct: 1   GEGYKFSGGLHGVGVSVVNALSEWLEVEVKREGKIHRQRYRRGVPEHDLEVVGQTE-ETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T +TF P + IF+    ++YD LQ+RLREL+FLN  V+I L DKR  E +++   Y+GGI
Sbjct: 60  TTITFKPDATIFTETTVYDYDILQNRLRELAFLNRGVKIILEDKR-GEGKQVVFQYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           ++FV +L+R+++ L + PI I G +++I  ++AM++ND +  N+  + NNI   +GGTH 
Sbjct: 119 QSFVEHLNRNREVLHEPPIYIMGEKESIHAEIAMQYNDSFSSNIYSYANNIHTHEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  ++   K +  ++ GDD REG T+++S+K+ DP+F  QTK KL +
Sbjct: 179 SGFKSALTRVINDYARRNNMLKDNDSNLTGDDVREGLTAIISVKISDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R+  E    +    +LEE+P  AK ++ K + A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 239 SEARTATEQLFTEHFQTYLEENPAVAKKVIGKAVMAARAREAARKARELTRRKNALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ R+  +SELF+VEGDSAGG+AKQGR R  QAILPLRGK+LNVE+AR DK L
Sbjct: 299 LPGKLADCTSRNAAESELFIVEGDSAGGTAKQGRDRMFQAILPLRGKVLNVEKARIDKAL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++EI T+ITALGTGI  + F+I K RYHKI+I
Sbjct: 359 SNEEIRTIITALGTGI-ANDFNIEKARYHKIVI 390


>gi|115333965|gb|ABI94015.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 390

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 193/392 (49%), Positives = 275/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF     ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  +    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  L  +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++I ALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMIPALGTGIGED-FNLEKARYHKVV 390


>gi|223674722|gb|ACN13057.1| DNA gyrase subunit B [bacterium 2195.1]
 gi|223674724|gb|ACN13058.1| DNA gyrase subunit B [bacterium 2216]
          Length = 384

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 229/386 (59%), Positives = 299/386 (77%), Gaps = 4/386 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG ++  ++++G   +PL V G   + TGT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHTQTYVHGEPQDPLKVIGDT-DVTGTT 60

Query: 173 VTFLPSS-DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS     +  +F YD L  RLRELSFLNS V I L+DKR  +       Y+GGI+A
Sbjct: 61  VRFWPSFNTFTNHTEFEYDILAKRLRELSFLNSGVAIRLLDKRDGKN--DHFHYEGGIKA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 FVEYLNKNKTPIHPTVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSA+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRSAMTRTLNAYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LP
Sbjct: 239 VKTAVETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRY 497
           QE+ TLITALG GIG+D ++ +KLRY
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRY 384


>gi|328349749|emb|CBY89182.1| GyrB protein [Flavobacterium sp. R-38377]
          Length = 411

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 186/412 (45%), Positives = 266/412 (64%), Gaps = 11/412 (2%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPL 159
           T++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G +YE  +  G    P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKALYPV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE- 217
              G      GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  + 
Sbjct: 61  KQIGETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREVDK 119

Query: 218 ---PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                        G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+ 
Sbjct: 120 EGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEIPVEVALIYNTSYTENIF 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+
Sbjct: 180 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA++
Sbjct: 240 QEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAKK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPLR
Sbjct: 300 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIII 502
           GKILNVE+A   K+  ++EI  + TALG  +G +      +I+KLRYHK+II
Sbjct: 360 GKILNVEKAMHHKVFENEEIRNIFTALGVTVGTEEDSKALNISKLRYHKVII 411


>gi|332800587|emb|CBY89783.1| GyrB protein [Flavobacterium fryxellicola]
          Length = 411

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 187/412 (45%), Positives = 264/412 (64%), Gaps = 11/412 (2%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPL 159
           T++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G +YE  +  G    P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKALYPV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS--- 215
              G      GT VTF P   IF     F+YDTL  R+RELS+LN  + I+  DKR    
Sbjct: 61  KQIGETT-KRGTIVTFYPDDTIFQQTTEFSYDTLSARMRELSYLNKGITITFTDKRELDK 119

Query: 216 -PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                        G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+ 
Sbjct: 120 DGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEIPVEVALIYNTSYTENIF 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+
Sbjct: 180 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA++
Sbjct: 240 AEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAKK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPLR
Sbjct: 300 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRNFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIII 502
           GKILNVE+A   K+  ++EI  + TALG  IG +      +I+KLRYHK+II
Sbjct: 360 GKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALNISKLRYHKVII 411


>gi|126035198|gb|ABN72352.1| gyrase B subunit [Aeromonas veronii]
          Length = 382

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 231/385 (60%), Positives = 293/385 (76%), Gaps = 3/385 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV 
Sbjct: 1   QVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS  IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV 
Sbjct: 60  FWPSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 ALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKL
Sbjct: 238 AVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 298 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYHK 499
           GTLITALG GIG+D ++ +KLRYH 
Sbjct: 358 GTLITALGCGIGRDEYNPDKLRYHN 382


>gi|51587621|emb|CAH19216.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 209/395 (52%), Positives = 283/395 (71%), Gaps = 3/395 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+R++R+G +YE ++  G+ + P   TG   +  GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRDGKVYEQAYARGVSNGPPQETG-TTDKRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P   +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  LIHFKPDPTVMDTVDFNFETLSQRLRELAFLNAGLLITIRDERTQKEHD--FKFDGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY E+    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAERGGLWKDLKETPAGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+ +LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLATFLEENPPLAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            EI TLITALGTGIG + +D  K RYH+II+MTDA
Sbjct: 358 AEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|41387044|gb|AAS01480.1| GyrB [Bacillus sp. H-03]
          Length = 390

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 192/393 (48%), Positives = 276/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHHQKYERGIPVADLKVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ T+ITA+GT IG D FDI K RYHK+II
Sbjct: 359 SNDEMRTIITAIGTNIGGD-FDIEKARYHKVII 390


>gi|148611285|gb|ABQ95831.1| DNA gyrase subunit B [Acidiphilium sp. DX1-12]
          Length = 400

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 233/402 (57%), Positives = 296/402 (73%), Gaps = 9/402 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVG +VVNALS W+++RI R+G  + + F NG    PL V G++ + T
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT VTF PS+  F+  +F++   + RLREL+FLNS + I+L D+R    +E    Y+GG+
Sbjct: 61  GTSVTFRPSAATFTRTEFDFAIYERRLRELAFLNSGLTINLRDERHSAVQEAHFRYEGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
             FVS+LDR K  L   P+          I ++ A+ WND YHE +LCFTNNI Q+D GT
Sbjct: 121 VEFVSWLDRAKTQLFSPPVTAFKDDAPGGIKVEFALAWNDTYHETMLCFTNNIVQRDSGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G RSALTR ++ Y E          S+ G+D REG T+VLS+K+PDP+FSSQTK+KL
Sbjct: 181 HLAGFRSALTRVVSKYAESLGKKDS--LSLSGEDMREGLTAVLSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+ +V++ V D L  W E HP E ++I +KV+DA+  R+AAR+AR+LTRRKGVLDI
Sbjct: 239 VSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRKGVLDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+
Sbjct: 299 STLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 358

Query: 468 MLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMT 504
           ML S EIGTLITALGTGIG     Q  FDI+KLRYH+I+IMT
Sbjct: 359 MLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|19909605|dbj|BAB86998.1| DNA gyrase subunit B [Halomonas halmophila]
          Length = 389

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 228/392 (58%), Positives = 287/392 (73%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  LKL I R+G ++E  + +G+ ++PL V G     +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELKLTIWRQGQVHEQVYRHGVAESPLSVVG-TTEQSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           + V F PS++ F   +F+YD L  RLRELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  SRVHFRPSTETFHNIEFHYDVLAKRLRELSFLNSGVAIRLTDERSGKE--ELFHYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+ +K  L           D + +++AM+WND + EN+ C+TNNIPQ DGGTHL+
Sbjct: 118 AFVDHLNTNKTVLNPVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R++LTR +  Y+E     KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRASLTRTLNHYIEAEGLLKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LV+GDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPSLSELYLVQGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG++ FD +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGREKFDPDKLRYHSIII 389


>gi|84310506|gb|ABC55401.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 390

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 193/392 (49%), Positives = 276/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGET-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF     ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  +    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  L  +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K R+HK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARFHKVV 390


>gi|327349241|gb|EGE78098.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1804

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 152/702 (21%), Positives = 260/702 (37%), Gaps = 49/702 (6%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
            ++  Q L  L+ + KRP  YIG  +  +                      GL+ +  E+
Sbjct: 130 SSERYQKLTQLEHIIKRPDTYIGSIERSTNQMWVYNSESESMEFREVSYVPGLYKIFDEI 189

Query: 49  LDNAID-ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D    +   D I VT+N + G  +V +NGRGIP ++H  E +   E+I   L   
Sbjct: 190 LVNAADNRHNDKNMDEIRVTVNRESGEISVWNNGRGIPIEIHSREKVYIPELIFGHLLTS 249

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+   L          Y+ ++ + +          
Sbjct: 250 SNYNDDQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTDNMSKMGKPKITD 309

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
              D  T+VTF P    F +   + D    ++ R+ +L+     V + L   R P     
Sbjct: 310 CKGDDYTKVTFTPDFKKFGMDGIDDDFEALVKRRVYDLAGTCK-VTVKLNGSRVPVRNFK 368

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                       +      +   +    I     +   ++    +DG  + V  F N+I 
Sbjct: 369 QYMQMY----TNAIKKERGEEASRDKSEIITDNPDPRWEIGFAVSDGSFQQV-SFVNSIA 423

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG+H++ +   +  ++   V+K   +     ++     R      ++ ++ +P F+S
Sbjct: 424 TTSGGSHVNTVADQICNKLVEVVKKKNKTG---ATLKPAQIRNHIFVFVNSQIVNPAFTS 480

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE+L +   +   +  ++D     + +  +   I+      A  +   +   R     
Sbjct: 481 QTKEQLTTKPSQFGSKCVLSDDFLKKILKTQVMENIMHFAEKKADQILKKSDGNRRSRMN 540

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
              L  A+  G       +D  +  L L EGDSA G A  GR+    +   + PLRGK+L
Sbjct: 541 NPKLTDANKAG------TKDGHQCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLL 594

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A  D++  + EI  +   LG    ++  D   LRY  ++IMTD D DG+HI+ LL+
Sbjct: 595 NVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLI 654

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            FF    PSL+      I    P+  + +G        +           L         
Sbjct: 655 NFFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKSFFTMQEYETWLEIHGHDKRW 714

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
            K            D  +    L +     H     E  +I   F+ +   E       +
Sbjct: 715 EKKYYKGLGTSTTDDAEIYFRDLDRHLKQFHVMRDHEAELIDLAFSKKKADER-KEWLRQ 773

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                       E ++   IN   IL            V++G
Sbjct: 774 FKPGTFLDHTTEEITYTDFINKELILFSMADNIRSIPSVIDG 815


>gi|102144062|gb|ABF70172.1| GyrB [Aeromonas caviae]
          Length = 381

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 230/384 (59%), Positives = 293/384 (76%), Gaps = 3/384 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKI 500
           LITALG GIG+D ++ +KLRYH I
Sbjct: 358 LITALGCGIGRDEYNPDKLRYHNI 381


>gi|31071483|dbj|BAC76790.1| DNA gyrase B subunit [Hapalosiphon delicatulus]
          Length = 396

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 185/393 (47%), Positives = 256/393 (65%), Gaps = 7/393 (1%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G  GLHH++YEV+DN+ID +L GY   + V LN DGS TV+D+GRGIPT +  + G S  
Sbjct: 2   GPRGLHHLVYEVVDNSIDXALAGYCTHVEVDLNADGSVTVTDDGRGIPTGIVAKTGKSGL 61

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    Y+VSGGLHGVGVSVVNALS W++  + R+  ++   +  GI  
Sbjct: 62  ETVLTVLHAGGKFGGGGYEVSGGLHGVGVSVVNALSEWVEATVWRDQKVHTQRYERGIPV 121

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L       N TGT VTF P S IF+   +F+Y TL  RLREL++LN+ V+I+  D R 
Sbjct: 122 TELNAKPYKDNRTGTSVTFQPDSQIFTTGTEFDYTTLASRLRELAYLNAGVKITFTDHRL 181

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
               S +P+  T  YKGGI  +++Y++  K+PL +  I +QG R+N+ +++A++W  D Y
Sbjct: 182 QLLKSDQPKVETYEYKGGIREYITYINADKQPLHEEVIYVQGERNNVQVEVALQWCTDAY 241

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +NVL F NNI   DGGTHL GL++ LTR + +   K    K  + ++ G+  REG T +
Sbjct: 242 TDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKDSEPNLSGEHVREGLTGL 301

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE HP  A  I+ K + A    
Sbjct: 302 ISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGETLTEYLEFHPSVADAILDKAIQAFKAA 361

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
           +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 EAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|307149444|gb|ADN38375.1| DNA gyrase B [Pseudoalteromonas sp. CMMED769]
          Length = 388

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 222/390 (56%), Positives = 292/390 (74%), Gaps = 3/390 (0%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G +++  +  G+ D PL V G
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGEVHQQKYTMGVPDAPLAVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            A   TGTE+ F PS + FS  +F+YD L  RLRELSFLNS V I L D+R  E +    
Sbjct: 61  EAE-STGTELRFWPSPETFSDINFHYDILAKRLRELSFLNSGVSIILTDER-EENKNDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI+AFV YL+R K P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ
Sbjct: 119 KYEGGIQAFVEYLNRKKTPVHQHVFHFTTEREDGISVEVSMQWNDGFQENIYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R+ALTR + +Y+EK   +KK+K S  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRAALTRTLNTYMEKEGFNKKNKTSATGDDAREGLTAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+  VE  + + L+ +L E+P +AK +V K++DA+  R+AAR+AR++TRRK
Sbjct: 239 TKDKLVSSEVKGAVEQAMAEKLNEFLLENPQDAKTVVNKIVDAARAREAARKAREMTRRK 298

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           GV+D+A LPGKLADC E+DP  SEL++VEGDSAGG AKQGRSR+   I+P++GKILNVE+
Sbjct: 299 GVMDLAGLPGKLADCQEKDPALSELYIVEGDSAGGYAKQGRSRKIHQIVPIKGKILNVEQ 358

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           AR  KM SS E G + T LG GIG+  +D 
Sbjct: 359 ARLIKMSSSHEDGGVPTVLGGGIGRAEYDP 388


>gi|33590356|gb|AAQ22718.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. akhurstii]
          Length = 384

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 226/387 (58%), Positives = 295/387 (76%), Gaps = 4/387 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNAL   L+L I+R+G ++E ++  G+  +PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALPEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GGI
Sbjct: 60  TRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 118 KAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLR 496
           SSQE+ TLITALG GIG+D ++ +KLR
Sbjct: 358 SSQEVATLITALGCGIGRDEYNPDKLR 384


>gi|33469253|gb|AAQ19675.1| DNA gyrase subunit B [Xenorhabdus nematophila]
          Length = 380

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 227/383 (59%), Positives = 294/383 (76%), Gaps = 4/383 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++ +G+  +PL + G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELTIRRDGKVHEQTYHHGVPQSPLNIVGDTE-QTGTTV 59

Query: 174 TFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS D F    +F YD L  RLRELSFLNS V I L+DKR+    E    YKGGI+AF
Sbjct: 60  RFWPSMDTFKINTEFEYDILAKRLRELSFLNSGVSIRLVDKRT--NAEDLFHYKGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L R+K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEFLSRNKNPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 238 KTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKL 495
           E+ TLITALG GIG+D ++ +KL
Sbjct: 358 EVATLITALGCGIGRDEYNPDKL 380


>gi|102144060|gb|ABF70171.1| GyrB [Aeromonas hydrophila]
          Length = 381

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 232/384 (60%), Positives = 293/384 (76%), Gaps = 3/384 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKI 500
           LITALG GIG+D ++ +KLRYH I
Sbjct: 358 LITALGCGIGRDEYNPDKLRYHNI 381


>gi|23978233|dbj|BAC21112.1| DNA gyrase B subunit [Anabaenopsis circularis]
          Length = 398

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 187/395 (47%), Positives = 261/395 (66%), Gaps = 9/395 (2%)

Query: 37  GESGLHHMIY--EVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           G  GLHH++Y  EV+DN++DE+L GY   I + +N DGS +V+D+GRGIPTD H   G S
Sbjct: 2   GPRGLHHLVYVYEVVDNSVDEALAGYCTHIEIEINADGSVSVTDDGRGIPTDTHSRTGKS 61

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           A E +MT LHAGGKF    YKVSGGLHGVG+SVVNALS  +++ + R+  ++   +  G+
Sbjct: 62  ALETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHTQRYERGV 121

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               LV        TGT VTF P + IF+   +F+Y TL  RLREL++LN+ V+I+  D 
Sbjct: 122 PVTELVAKPYKEARTGTSVTFKPDTQIFTTGIEFDYITLAGRLRELAYLNAGVKITFTDN 181

Query: 214 R-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-D 267
           R     S  P+  T  YKGGI+ +++Y++R K+PL +  I +QG R N+ I++A++W  D
Sbjct: 182 RLELIKSDTPKVETYEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERSNVQIEVALQWCTD 241

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y +NVL F NNI   DGGTHL GL++ LTR + +   K    K+++ ++ G+  REG T
Sbjct: 242 AYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNLSGEHVREGLT 301

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+PDP F  QTK KL ++EVR +V+S V + L+ +LE HP  A  I+ K + A  
Sbjct: 302 AVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIADSILDKAIQAFK 361

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             +AAR AR+L RRK VL+ + LPGKLADCS RDP
Sbjct: 362 AAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 396


>gi|83854009|gb|ABC47942.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 385

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 229/387 (59%), Positives = 303/387 (78%), Gaps = 3/387 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT++ F PS
Sbjct: 1   GLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV +L+ 
Sbjct: 60  AETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQHLNT 118

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALT
Sbjct: 119 NKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALT 178

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 179 RTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 238

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC
Sbjct: 239 SAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 298

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 299 QEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 358

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMT 504
           ITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 359 ITALGCGIGRDEYNPDKLRYHNIIIMT 385


>gi|33590310|gb|AAQ22695.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 382

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 225/385 (58%), Positives = 295/385 (76%), Gaps = 4/385 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL + G     TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGETE-QTGTRVRFW 59

Query: 177 PSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GGI+AFV +
Sbjct: 60  PSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGGIKAFVEF 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A
Sbjct: 118 LNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 MTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 238 VETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKI 500
           TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 TLITALGCGIGRDEYNPDKLRYHSI 382


>gi|11078697|dbj|BAB17353.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 389

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 227/392 (57%), Positives = 297/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+GTLITALG GIG+D ++I+KLRYH III
Sbjct: 358 SQEVGTLITALGCGIGRDEYNIDKLRYHNIII 389


>gi|84310516|gb|ABC55406.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 192/392 (48%), Positives = 275/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGV  SVVNALS+ L + + R+G I+  ++  G+    L + G   + TG
Sbjct: 1   GSGYKVSGGLHGVRASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVV 390


>gi|317420198|emb|CBW30256.1| gyrase B subunit [Pseudoalteromonas haloplanktis]
          Length = 390

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 235/392 (59%), Positives = 302/392 (77%), Gaps = 6/392 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  LKL I+REG ++E  +  G+ D PL V G +    GTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQFYTMGVPDAPLAVIGDSE-TNGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS + F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI AF
Sbjct: 60  IRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-EENKSDHFKYEGGIRAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           V YL+R+K P+ +        R+   IS++++M+WND + EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 VEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDAFQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 GFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + +  + +L E+PL+AKI+V K++DA+  R+AAR+AR++TRRKG +D+A
Sbjct: 239 SSEVKSAVEQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           LSSQE+ TLITALG GIG+D +D  KLRYH+I
Sbjct: 359 LSSQEVATLITALGCGIGRDEYDPEKLRYHRI 390


>gi|51571555|emb|CAH18944.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 210/395 (53%), Positives = 282/395 (71%), Gaps = 3/395 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+R++R G IYE ++  G+ +      G   +  GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKIYEQTYARGVSNGSPQEVG-TTDKRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  MIHFKPDSMVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAEKGGVWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARIAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            EI TLITALGTGIG + +D  K RYH+II+MTDA
Sbjct: 358 AEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|198042720|gb|ACH81185.1| GyrB [Vibrio sp. UST950701-007]
          Length = 381

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 224/383 (58%), Positives = 297/383 (77%), Gaps = 3/383 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+
Sbjct: 60  TQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 239 SEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDI 492
           SSQE+ TLITALG GIG+D ++ 
Sbjct: 359 SSQEVATLITALGCGIGRDEYNP 381


>gi|3985984|dbj|BAA34868.1| DNA gyrase subunit B protein [Nitrosomonas sp. AL212]
          Length = 389

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 231/392 (58%), Positives = 295/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS WLKL I+R+   +++ F  G+   PL + G +    G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLKLTIRRDSKTHQIEFRMGVPVKPLEIIGESERH-G 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV FL S +IF   +++YD    RLRELSFLN+ V+I LID+RS +       + GGI 
Sbjct: 60  TEVHFLASKEIFGNIEYHYDIFAKRLRELSFLNNGVKIHLIDQRSGKD--EKFAFTGGIR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++R K  L  S     G +DNI+++++M+WND Y E VLCFTNNIPQKDGGTHL+
Sbjct: 118 NFVEYINRSKTVLHPSIFYTTGVKDNIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR + +Y+EK+  +KK K    GDD REG + VLS+K+ +P+FSSQTKEKLVSS
Sbjct: 178 GLRAAMTRTLNNYIEKNELAKKAKVETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVE  V   LS +L E+PL+AK I  K++D++  R+AAR+AR+LTRRKGVLD   L
Sbjct: 238 EVRPVVEEVVTQKLSEYLLENPLDAKTICNKIIDSARAREAARKARELTRRKGVLDSMGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E++P   EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++S
Sbjct: 298 PGKLADCQEKNPALCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEI +LITALGTG G+D ++ +KLRYH+III
Sbjct: 358 SQEIISLITALGTGFGKDEYNPDKLRYHRIII 389


>gi|208609659|dbj|BAG72205.1| gyrase B [Methylobacterium sp. RB129]
          Length = 395

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 258/395 (65%), Positives = 310/395 (78%), Gaps = 3/395 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALSSWL+LRI R G  + M F +G    PL   G A +  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSWLRLRIWRAGQEHAMEFRHGDAVAPLAAVGPANDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV+FLPS++ F+  +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y GG+E
Sbjct: 61  TEVSFLPSTETFTQVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKRDELVYDGGVE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR K  L+++PI ++  RD I +++A+ WND YHENVLCFTNNIPQ+DGGTHL+
Sbjct: 121 AFVRYLDRAKPALIEAPIVLRQERDGIGVEVALWWNDSYHENVLCFTNNIPQRDGGTHLA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQIT Y E S  +K++K S+ GDDCREG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQITGYAESSGVTKREKVSLTGDDCREGLTAVVSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  +N+ L +WLEEHP EA+ I  KV  A+  R+AAR+ARDLT RKG LDIASL
Sbjct: 241 EVRPAVEGVLNETLGSWLEEHPSEARTIAAKVALAAAAREAARKARDLTTRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVERAR DKMLS
Sbjct: 301 PGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARLDKMLS 360

Query: 471 SQEIGTLITALGTGIGQ---DSFDINKLRYHKIII 502
           SQEIGTLITALGTGIG+    +F+ +KLRYH+III
Sbjct: 361 SQEIGTLITALGTGIGRDGAHAFNPDKLRYHRIII 395


>gi|313747308|dbj|BAJ41202.1| DNA gyrase subunit B [Bacillus sp. 2B205-2S]
          Length = 390

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 192/393 (48%), Positives = 268/393 (68%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS    +++ R+G+I+E+ F  G    PL + G   +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSIETDVQVHRDGHIHEIKFERGRTIQPLTIIGDTDH-NG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F     IF     + YD L HR+REL++LN  + I ++D+R+ E R+    Y+GGI
Sbjct: 60  TTTRFKADPTIFKETTVYEYDILAHRIRELAYLNRGITIIIMDERNEEIRKDVYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V  L+ +K+PL    I ++G +D ISI++AM++N G+   +L F NNI   +GGTH 
Sbjct: 120 KSYVEQLNENKEPLH-EAIDLKGEKDGISIEIAMQYNSGFASTILSFANNINTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  K+   K    ++ G+D REG  +++SIK PDP+F  QTK KL +
Sbjct: 179 SGFKTALTRVINDYARKNNLLKDADANLSGEDVREGLVAIVSIKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV S+  S  ++    +L E+P  A+ IV K L AS  R AA++AR++TRRK  L+I+S
Sbjct: 239 SEVSSITNSLFSERFERFLLENPTVARTIVDKGLIASRARVAAKKAREMTRRKSALEISS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS R P++ E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 299 LPGKLADCSSRHPEECEVYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++EI  +ITA+GTGIG++ F++ K RYHKI+I
Sbjct: 359 SNEEIRAMITAVGTGIGEE-FNLEKARYHKIVI 390


>gi|19909551|dbj|BAB86971.1| DNA gyrase subunit B [Caulobacter segnis]
          Length = 399

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 252/399 (63%), Positives = 307/399 (76%), Gaps = 10/399 (2%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND---- 168
           SYKVSGGLHGVGVSVVNALS WL+L I R G +++M F  G     L VTG +       
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRQEGP 60

Query: 169 ------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                 TGTEVTF PS D F+  +F+  TL+HRLREL+FLNS V I   D R  EP E  
Sbjct: 61  KAGETLTGTEVTFFPSRDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDAEPWEEK 120

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           + Y+GGIEAFV +LD+ K PL+++PI ++G +D + +DLA+ WND YHE +LCFTNNIPQ
Sbjct: 121 LHYEGGIEAFVRHLDKAKTPLLKAPISVRGLKDKVEVDLALWWNDSYHEQMLCFTNNIPQ 180

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHLS  R+ALTR IT+Y E S   KK+K ++ G+D REG T VLS+K+PDP+FSSQ
Sbjct: 181 RDGGTHLSAFRAALTRIITNYAESSGILKKEKVNLGGEDAREGLTCVLSVKVPDPKFSSQ 240

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEVR  VE  V +GL+ W EEHP EA+ IV K+ +A+  R+AAR+AR+LTRRK
Sbjct: 241 TKDKLVSSEVRPAVEGLVQEGLATWFEEHPNEARAIVSKIAEAAAAREAARKARELTRRK 300

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             LDI SLPGKLADCSERDP KSE+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNVER
Sbjct: 301 SALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVER 360

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           ARFDKMLSS +IGTLITALG GIG+D F+ +K+RYHKI+
Sbjct: 361 ARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIV 399


>gi|27530062|dbj|BAC53886.1| DNA gyrase B subunit [Legionella pneumophila subsp. fraseri]
          Length = 279

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 158/282 (56%), Positives = 204/282 (72%), Gaps = 3/282 (1%)

Query: 48  VLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
           V+DN+IDESL GY   I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGG
Sbjct: 1   VVDNSIDESLAGYCKEIFVTIHSDESITVKDDGRGIPVDIHKEEGKSAAEVIMTVLHAGG 60

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L L ++R G +YE  + +G+ + P+  TG A N
Sbjct: 61  KFDDNSYKVSGGLHGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPEAPIAETGEA-N 119

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++ F PS++ FS  +F+YD L  RLRELS+LNS V I L D+R+ +    T  Y+G
Sbjct: 120 STGTQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKK--DTFHYEG 177

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+AFV +L+++K P+      +   +D I I+LAM+WNDGY E + CFTNNIPQ+DGGT
Sbjct: 178 GIKAFVEHLNKNKTPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQRDGGT 237

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           H++G R+ALTR + +Y+E    +KK K S  GDD REG T+V
Sbjct: 238 HMAGFRAALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAV 279


>gi|126035282|gb|ABN72394.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|126035298|gb|ABN72402.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 383

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 231/386 (59%), Positives = 297/386 (76%), Gaps = 4/386 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWP 59

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL
Sbjct: 60  SHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+
Sbjct: 118 NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 178 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLAD
Sbjct: 238 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKIII 502
           LITALG GIG+D ++ +KLRYH III
Sbjct: 358 LITALGCGIGRDEYNPDKLRYHSIII 383


>gi|148611277|gb|ABQ95827.1| DNA gyrase subunit B [Acidiphilium sp. DX1-8]
          Length = 400

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 233/402 (57%), Positives = 296/402 (73%), Gaps = 9/402 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVG +VVNALS W+++RI R+G  + + F NG    PL V G++ + T
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT VTF PS+  F+  +F++   + RLREL+FLNS + I+L D+R    +E    Y+GG+
Sbjct: 61  GTSVTFRPSAATFTRTEFDFAIYERRLRELAFLNSGLTINLRDERHSAVQEAHFRYEGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
             FVS+LDR K  L   P+          I ++ A+ WND YHE +LCFTNNI Q+DGGT
Sbjct: 121 VEFVSWLDRAKTQLFSPPVTAFKDDAPGGIKVEFALAWNDTYHETMLCFTNNIVQRDGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G RSALTR ++ Y E          S+ G+D REG T+VLS+K+PDP+FSSQTK+KL
Sbjct: 181 HLAGFRSALTRVVSKYAESLGKKDS--LSLSGEDMREGLTAVLSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+ +V++ V D L  W E HP E ++I +KV+DA+  R+AAR+AR+LTRRKGVLDI
Sbjct: 239 VSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRKGVLDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+
Sbjct: 299 STLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 358

Query: 468 MLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMT 504
           ML S EIGTLITALGTGIG     Q  FDI+KLRYH+ +IMT
Sbjct: 359 MLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRTVIMT 400


>gi|83017275|dbj|BAE53556.1| DNA gyrase B [Microbulbifer sp. MBIC06115]
          Length = 389

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 225/392 (57%), Positives = 296/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G IYE  + +G+   PL V G + + +G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSRELKLTIRRGGKIYEQIYHHGVPQAPLGVVGDS-DTSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS+D F+  +F++D L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSADTFNNIEFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE--EVYEYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D  ++++A++WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPINKVLHFHSQREDGTAVEVALQWNDSFQESIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGQHFADYLMEHPQEAKAVVIKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SVEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|313747311|dbj|BAJ41203.1| DNA gyrase subunit B [Bacillus sp. 6B254-3L]
          Length = 390

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 192/393 (48%), Positives = 268/393 (68%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS    +++ R+G+I+E+ F  G    PL + G   +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSIETDVQVHRDGHIHEIKFERGRTIQPLTIIGDTDH-NG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F     IF     + YD L HR+REL++LN  + I ++D+R+ E R+    Y+GGI
Sbjct: 60  TTTRFKADPTIFKETTVYEYDILAHRIRELAYLNRGITIIIMDERNEEIRKDVYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V  L+ +K+PL    I ++G +D ISI++AM++N G+   +L F NNI   +GGTH 
Sbjct: 120 KSYVEQLNENKEPLH-EAIDLKGEKDGISIEIAMQYNSGFASTILSFANNINTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  K+   K    ++ G+D REG  +++SIK PDP+F  QTK KL +
Sbjct: 179 SGFKTALTRVINDYARKNNLLKDSDANLSGEDVREGLVAIVSIKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV S+  S  ++    +L E+P  A+ IV K L AS  R AA++AR++TRRK  L+I+S
Sbjct: 239 SEVSSITNSLFSERFERFLLENPTVARTIVDKGLIASRARVAAKKAREMTRRKSALEISS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS R P++ E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 299 LPGKLADCSSRHPEECEVYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++EI  +ITA+GTGIG++ F++ K RYHKI+I
Sbjct: 359 SNEEIRAMITAVGTGIGEE-FNLEKARYHKIVI 390


>gi|19909565|dbj|BAB86978.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 399

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 256/399 (64%), Positives = 310/399 (77%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-- 168
           Q SYKVSGGLHGVGVSVVNALS WL+L I R+G  + + F  G     L V G A     
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELVIYRDGKKHSVRFERGETVRSLAVVGDAPMRED 60

Query: 169 -----TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                TGTEVTF PS   FS  DF+  TL+HRLREL+FLNS V I L D R PEP EI +
Sbjct: 61  KGRLLTGTEVTFFPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLSDHRGPEPIEIML 120

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GG+EAFV +LD+ K P+++  I I+G +D I +DLA+ WND YHE +LCFTNNIPQ+
Sbjct: 121 HYEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGIELDLALWWNDSYHETMLCFTNNIPQR 180

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHLS  R++LTR + SY+E S  +KK+K +  G+D REG T VLS+K+PDP+FSSQT
Sbjct: 181 DGGTHLSAFRASLTRVMGSYIESSGLAKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQT 240

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEVR  VES  ++GL+ W EEHP+EAK+IV K+++A+  R+AAR+ARDLTRRK 
Sbjct: 241 KDKLVSSEVRPAVESLCSEGLATWFEEHPVEAKMIVSKIIEAASAREAARKARDLTRRKS 300

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            L+I+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERA
Sbjct: 301 ALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERA 360

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           RFD+MLSS  IGTLI ALGTGIG+D F+ +KLRYHKII+
Sbjct: 361 RFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 399


>gi|86740466|ref|YP_480866.1| DNA topoisomerase II [Frankia sp. CcI3]
 gi|86567328|gb|ABD11137.1| DNA topoisomerase II [Frankia sp. CcI3]
          Length = 658

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 148/388 (38%), Positives = 219/388 (56%), Gaps = 5/388 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
            Y A SI +  GL AV++ PSMYIG T G  GLHH+++E++DNA+DE   G   +I V L
Sbjct: 13  EYTARSIVLFSGLTAVRRNPSMYIGST-GTEGLHHLVFELIDNAVDEFAVGTCGLIEVVL 71

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           + DGSC+VSD+GRGIP D H +  + A +V+MT LH+GGKF   +Y+ S GLHGVG+S V
Sbjct: 72  HADGSCSVSDDGRGIPVDEHPDLRVPALQVVMTTLHSGGKFQGDTYRRSAGLHGVGLSCV 131

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL++ + R+G +Y  S+  G     + + G   +  GT V F P   IF    F 
Sbjct: 132 NALSEWLRVEVHRDGGMYTQSYGRGEPTTTVDMVG-TSDRHGTLVRFRPDMMIFDAAAFV 190

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
              L  R+ EL+FL+  + + L+D+R+      T  Y  G++ F++  +R  + +   PI
Sbjct: 191 TGVLAARMAELAFLHPGLVLRLVDERTDTE--ETFDYVEGVKGFLTQRNRDAEVVHPEPI 248

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I   R ++ +D+A++W +GY E +  F N +    GG H+  LR+ L   I  +   + 
Sbjct: 249 IITAERSDLVLDVALQWTEGYAEEMSSFVNAVRTDQGGAHVDALRTGLASAINDHASMNR 308

Query: 309 GSK-KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
                    +  +D  EG T+V+S++M  PRF  QTK +L S EV   V   V + ++A 
Sbjct: 309 MLDSFAGERITTNDILEGLTAVVSLRMDSPRFDGQTKRRLQSPEVGPFVRRAVAETVAAT 368

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRA 395
           L   P     +V + LDA+  R AAR A
Sbjct: 369 LRREPGLGARVVARALDATRARLAARLA 396


>gi|325279768|ref|YP_004252310.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Odoribacter splanchnicus DSM 20712]
 gi|324311577|gb|ADY32130.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Odoribacter splanchnicus DSM 20712]
          Length = 611

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 167/609 (27%), Positives = 271/609 (44%), Gaps = 55/609 (9%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
            +Y  DSI+ L   + ++ RP MYIG     S    G++ ++ EV+DN+IDE   G    
Sbjct: 3   ENYSEDSIRTLDWQEHIRLRPGMYIGKLGDGSAPDDGIYILVKEVVDNSIDEFAMGAGTE 62

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           IT+ +  D   +V D GRGIP     +          ++++ G K++ +++K S GL+GV
Sbjct: 63  ITIKV-EDRKVSVRDFGRGIPLGKLVDAS--------SKMNTGAKYDSEAFKKSVGLNGV 113

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+  VNALS   +++  R+G    + +    +              GT+VTF    DIF 
Sbjct: 114 GIKAVNALSESFEIQSFRDGETKYVRYCRAKIVEE-RKIEPTDQPNGTQVTFFADKDIFG 172

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              +  + L+  ++   FLN+ + I   D           + K G+   +          
Sbjct: 173 NYHYIAEYLEAMVKNYVFLNTGLTIFFND--------HKYYSKRGLYDLLMENMSG--EG 222

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +   I ++G      I++AM     Y E    F N      GGTHLS  R A+ + I  +
Sbjct: 223 LYPIIHLKGED----IEMAMTHGRQYGEEYYSFVNGQHTTQGGTHLSAFREAVAKTIRDF 278

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS--------- 354
            +K F            D R      +SIK+ +P F SQTK KL S ++R          
Sbjct: 279 YKKDFEIS---------DIRTSIIGAISIKVQEPVFESQTKTKLGSKDIRPDGPTVRNFI 329

Query: 355 --VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLP 411
              V   +++ L    +   L  + IV+   +   +    + AR+  ++           
Sbjct: 330 MDFVTRELDNYLHRNPDTAELLLRKIVETEKERKAMSGVQKIARERAKQVSLHNRKLRDC 389

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
               + +     +S +F+ EGDSA GS  + R    QA+  LRGK LN      + +  +
Sbjct: 390 RVHFNSNHERKNESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKEIVYKN 449

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +E   L  AL    G     + +LRY+ +I+ TDADVDG HIR LLLTFF +  P L+  
Sbjct: 450 EEFNLLQAALNIEDG-----LEELRYNNVIVATDADVDGMHIRLLLLTFFLQFFPDLVRA 504

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           G +YI++ PL+ +   K  +Y   +   E+ +       EI  F    G IS N+  +FI
Sbjct: 505 GHVYILQTPLFRVRNKKETRYCYSDAERENAIQKLGPKPEITRF-KGLGEISPNEFVHFI 563

Query: 592 DDALKIDKL 600
              ++++ +
Sbjct: 564 GKDIRLEPV 572


>gi|151547439|gb|ABS12463.1| topoisomerase II [Bacillus thuringiensis]
          Length = 390

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 190/393 (48%), Positives = 275/393 (69%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ +V K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ T+ITA+GT IG D FDI K RYHK+II
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHKVII 390


>gi|11270916|pir||T43907 DNA gyrase chain B [imported] - Acinetobacter sp. (fragment)
 gi|4514427|dbj|BAA75412.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 388

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 236/392 (60%), Positives = 288/392 (73%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L I R G I+E  + +G    PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPQYPLKVVGETS-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS D FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSGDTFSQTIFNVDILARRLRELSFLNAGVKIVLRDERV--NFEHIYAYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L         S + I++++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKNHLNDIFHFTADSDNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYLENENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC  +DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQ-KDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 356

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+GTLITALG GIG++ ++ +KLRYHKIII
Sbjct: 357 SQEVGTLITALGCGIGREEYNPDKLRYHKIII 388


>gi|229496649|ref|ZP_04390363.1| DNA topoisomerase II domain protein [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316546|gb|EEN82465.1| DNA topoisomerase II domain protein [Porphyromonas endodontalis
           ATCC 35406]
          Length = 645

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 172/658 (26%), Positives = 283/658 (43%), Gaps = 87/658 (13%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           + Y   SI  L     +++RP MYIG     S    G++ ++ EV+DN+IDE + G   +
Sbjct: 5   TGYTEGSITTLDWDVHIRRRPGMYIGKLGDGSASDDGIYVLLKEVIDNSIDEFVMGQGKV 64

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+  +G+ +V D GRGIP        I A     ++++ G K + +++K S GL+GV
Sbjct: 65  IEVTI-AEGAVSVRDYGRGIPLGKL----IDAV----SKMNTGAKMDSRAFKKSVGLNGV 115

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+  VNALSS   ++ +REG    + F    +     V        GTEV F P + +F 
Sbjct: 116 GIKAVNALSSSFSVQSRREGQTKRVEFERAKILYDGEVV-PCDEPQGTEVCFTPDATLFR 174

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F  + +   LR  +FLN+ + I    K+           + G++  ++       PL
Sbjct: 175 NYQFREEYVVAMLRNYTFLNAGLTIIYNGKK--------FLSRHGLQDLLNEDLTG-DPL 225

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                          I++A+   + Y E    F N      GGTHLS  R ++ R I  +
Sbjct: 226 YPVIHLQSDD-----IEVAITHINQYGEEFYSFVNGQNTTQGGTHLSAFRESVARVIKEH 280

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV----------- 352
             K+F            D R G  + +S+K+ +P F SQTK KL S ++           
Sbjct: 281 FSKNFDYS---------DIRSGIVAAVSLKVIEPTFESQTKTKLGSKDMVPEEHQYKDEP 331

Query: 353 ------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--------VRDAARRARDL 398
                 +  V  F+ D L  +L  H   A +++KK+ ++           + A  RA+  
Sbjct: 332 LYGVSIQKFVGDFLKDRLDDYLHIHTDVADVMLKKIQESERERKSMSGVAKLARERAKKS 391

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           +     L   S+        +++P+++ +F+ EG+SA GS    R  + QA+  LRGK L
Sbjct: 392 SLHNKKLRDCSIHLNDTKLKDKEPERTSIFITEGNSASGSITTSRDPKYQAVFSLRGKPL 451

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N        +  ++E   L  AL    G     +  LRY+++II TDAD DG HIR L+L
Sbjct: 452 NCFGLTKKIVYENEEFNLLQAALNIEEG-----LEGLRYNRVIIATDADDDGMHIRLLML 506

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-------------------YVKDEESL 559
           TFF +  P L+  G +YI++ PLY +                          Y    +  
Sbjct: 507 TFFLQFFPDLVRKGHVYILETPLYRVALPPGEIAQRKKRKTKGEKATSEEYTYYCYSDEE 566

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFI-DDALKIDKLIKDFYPNHDKTFIEQA 616
            D  ++    +         G IS ++ +  I ++ +K+ ++       +        
Sbjct: 567 RDQALHLLGKKAQLTRFKGLGEISADEFKELITEENIKLRQVTLRKEDTYKHLLDFYM 624


>gi|38224465|gb|AAR14140.1| DNA gyrase B subunit [Fusobacterium varium]
          Length = 398

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 179/399 (44%), Positives = 261/399 (65%), Gaps = 2/399 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS W  + +K +G I+   +  G+ +  +   G    + G
Sbjct: 2   NDNYKVSGGLHGVGVSVVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTT-EHG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F    +IF    ++Y+TL++RL+EL++LN  ++I L D R    ++    ++GGI 
Sbjct: 61  TTVRFKADHEIFETLIYDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKKEEFKFEGGIV 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+  +    + L+  PI + G  DN+++D+A  +     E +  F NNI   +G +H+S
Sbjct: 121 DFLKEITEETEKLIPEPIYMTGEVDNVAVDIAFLYTVNQSEIIYSFVNNINTHEGRSHVS 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +    +     K+    + G+D REG T+++S+K+P P+F  QTK KL +S
Sbjct: 181 GFRTALTGVLNDVGKAQGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV  +V + V   L   LE++P + KII++K+L++   R+AA++AR+L  RK VL++ SL
Sbjct: 241 EVTGIVSTLVGTNLKIVLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS ++P + E+++VEGDSAGGSAKQGR R +QAILPLRGKILNVE+A   K L 
Sbjct: 301 PGKLADCSSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLE 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           + E+  +ITA GT IG DSF+I KLRY KII+MTDADV+
Sbjct: 361 NNEVRAMITAFGTSIG-DSFNIEKLRYGKIILMTDADVE 398


>gi|119196923|ref|XP_001249065.1| hypothetical protein CIMG_02836 [Coccidioides immitis RS]
          Length = 1635

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 146/693 (21%), Positives = 258/693 (37%), Gaps = 43/693 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGD----------------------TDGESG 40
            N  +S   +D  Q L  ++ + KRP  YIG                            G
Sbjct: 42  TNEASSGKSSDQYQKLSQVEHIIKRPDTYIGSIERTQQNMWVYNSTTDQMEYREVSYVPG 101

Query: 41  LHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEV 98
           L+ +  E+L NA D          I VTL+M+ G  +V +NGRGIP ++H +E I   E+
Sbjct: 102 LYKIFDEILVNAADNKQRDNNMSEIKVTLDMEAGEISVWNNGRGIPVEIHSKEKIYIPEL 161

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILD 156
           I   L     ++ +  KV+GG +G G  + N  S+   +     R    Y  ++ + +  
Sbjct: 162 IFGHLLTSSNYDDEQAKVTGGRNGYGAKLCNIFSTEFTVETADSRSKKKYRQTWQDNMSK 221

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
                   +  +  T++TF P    F ++  + D      R +  L  + ++++    S 
Sbjct: 222 MRKAKITESKGNDYTKITFKPDFKKFGMEGMDADFEALVKRRVYDLAGTCRVTVRLNGSR 281

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
            P      Y       +      +         I         ++    +DG  + V  F
Sbjct: 282 IPISNFKKYMEMYTKAIKRERGEEAA--SDKSEIVTDSTEPRWEIGFAVSDGSFQQV-SF 338

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N+I    GGTH++ +   +  ++   V+K   +      +     R      ++  + +
Sbjct: 339 VNSIATTSGGTHVNYISDQICSKLADAVKKKNKTGPL---LKPAQIRNHIFLFVNCLIVN 395

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F+SQTKE+L + + +   +  +++     + +  +   I+      A  +      +R
Sbjct: 396 PAFTSQTKEQLTTKQSQFGSKCVLSEEFLKKILKTQVMQNIMHFAEQKADQILKKTDGSR 455

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPL 453
                   L  A+  G       ++     L L EGDSA G A  GR+    +   + PL
Sbjct: 456 RARMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPL 509

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNV  A  D++  +QEI  +   LG    ++  D   LRY  ++IMTD D DG+HI
Sbjct: 510 RGKLLNVRDASVDQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHI 569

Query: 514 RTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           + LL+ +     PSL+   GFL     P+  + +G        +         +      
Sbjct: 570 KGLLINYLQVAFPSLLKIPGFLIEFITPIVKVWKGDPKNPTASKSFFTLPEYEEWKKSHG 629

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                 K         +  D  +    L +     H     E  +I   F+ +   +   
Sbjct: 630 HDRRWDKKYYKGLGTSSTEDAEVYFRDLDRHLKEFHAMQDNEAQLIDLAFSKKKADDR-K 688

Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
               +            + ++   IN   IL  
Sbjct: 689 EWLRQFKPGTYLDHSVDKITYTDFINKELILFS 721


>gi|157073793|dbj|BAF79895.1| gyrase B [Methylobacterium rhodesianum]
 gi|157073803|dbj|BAF79900.1| gyrase B [Methylobacterium rhodesianum]
          Length = 399

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 249/399 (62%), Positives = 308/399 (77%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+ LKLRI R G  + M F +G    PL V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS + F++ +F++ TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+E
Sbjct: 61  TEVTFLPSPETFTMTEFDFATLEKRLRELAFLNSGVRIVLTDARHAEHKREELCYEGGVE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M  P+ + G RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPVEGMTKPVTVLGERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQ+T Y E S  +KK+K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQMTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENILNEGLSRWLEENPAQAKSVMAKVVLAAAAREAARKARETITRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPTKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|157073811|dbj|BAF79904.1| gyrase B [Methylobacterium zatmanii]
          Length = 399

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 251/399 (62%), Positives = 308/399 (77%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+ LKLRI R G  + M F +G    PL V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS + F++ +F+Y TL+ RLREL+FLNS V+I L D R  E R   + Y+GG+E
Sbjct: 61  TEVTFLPSPETFTMTEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHRREELCYEGGVE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M  P+ + G RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPVEGMAKPVTVLGERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQ+T Y E S  +KK+K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQLTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPTKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|51571545|emb|CAH18939.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 208/395 (52%), Positives = 281/395 (71%), Gaps = 3/395 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+R++R+G +YE S+  G+ +      G   +  GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRDGKVYEQSYARGVSNGSPQEVG-TTDKRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P   +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  LIHFKPDPTVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVFIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +S 
Sbjct: 178 FKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSV 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            EI TLITALGTGIG + +D  K RYH+II+MTDA
Sbjct: 358 AEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|126035254|gb|ABN72380.1| gyrase B subunit [Enterobacter cloacae]
          Length = 384

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 233/386 (60%), Positives = 299/386 (77%), Gaps = 4/386 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTMV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 238 KSAVEQQMNELLSEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYH 498
           E+ TLITALG GIG+D ++ +KLRYH
Sbjct: 358 EVATLITALGCGIGRDEYNPDKLRYH 383


>gi|317420192|emb|CBW30253.1| gyrase B subunit [Pseudoalteromonas antarctica]
          Length = 385

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 233/387 (60%), Positives = 297/387 (76%), Gaps = 6/387 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  LKL I+REG ++E ++ +G+ D PL V G A + TGTE+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYTHGVPDAPLAVIGDA-DTTGTEL 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS   F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI AFV
Sbjct: 60  RFWPSDQTFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIRAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            YL+R+K P+ +           D I ++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 EYLNRNKTPIHKGVFHFTHTREEDGIVVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 FRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  + +  + +L EHP +AKI+V K++DAS  R+AAR+AR++TRRKG +D+A 
Sbjct: 239 SEVKSAVEQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLR 496
           SSQE+ TLITALG GIG+D ++  KLR
Sbjct: 359 SSQEVATLITALGCGIGRDEYNPEKLR 385


>gi|126035356|gb|ABN72431.1| gyrase B subunit [Vibrio cholerae]
          Length = 381

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 226/383 (59%), Positives = 296/383 (77%), Gaps = 3/383 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV+
Sbjct: 60  FWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVT 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 HLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 GALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 239 SAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 299 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 358

Query: 474 IGTLITALGTGIGQDSFDINKLR 496
           + TLITALG GIG+D ++ +KLR
Sbjct: 359 VATLITALGCGIGRDEYNPDKLR 381


>gi|83854007|gb|ABC47941.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 385

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 228/387 (58%), Positives = 302/387 (78%), Gaps = 3/387 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT++ 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV 
Sbjct: 60  FWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQ 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 HLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV SEV+
Sbjct: 179 AALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVLSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 239 SAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 299 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 358

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKI 500
           + TLITALG GIG+D ++ +KLRYH I
Sbjct: 359 VATLITALGCGIGRDEYNPDKLRYHNI 385


>gi|51571563|emb|CAH18948.1| gyrase B [Corallococcus coralloides]
 gi|51571565|emb|CAH18949.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 210/395 (53%), Positives = 283/395 (71%), Gaps = 3/395 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+R++R G +YE S+  G+ +      G   +  GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVSNGSPQEVG-TTDKRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    ++GGI +
Sbjct: 60  TIHFKPDSMVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFEGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            EI TLITALGTGIG + +D  K RYH+II+MTDA
Sbjct: 358 AEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|11078693|dbj|BAB17351.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 388

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 225/391 (57%), Positives = 295/391 (75%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS + F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSEETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG+D ++I+KLRYH II
Sbjct: 358 SQEVGTLITALGCGIGRDEYNIDKLRYHNII 388


>gi|126035204|gb|ABN72355.1| gyrase B subunit [Escherichia coli]
          Length = 384

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 231/387 (59%), Positives = 296/387 (76%), Gaps = 4/387 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWP 59

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL
Sbjct: 60  SLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+
Sbjct: 118 NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 178 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLAD
Sbjct: 238 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
             ERDP  SEL+LVEGDSAGGSAKQGR+R+NQA+LPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 SQERDPALSELYLVEGDSAGGSAKQGRNRKNQALLPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIM 503
           LITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 LITALGCGIGRDEYNPDKLRYHNIIIM 384


>gi|51987928|dbj|BAD44724.1| DNA gyrase subunit B [Pseudomonas anguilliseptica]
          Length = 390

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 227/393 (57%), Positives = 299/393 (76%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+R G I+E ++++G+   P+   G + + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPTAPIATVGDS-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS + F+   F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSEETFANIHFSWDILAKRLRELSFLNSGVGILLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEYLNHNKTAVNQVFHFTVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR+  +Y+E+    KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRKPDAYIEQEGLPKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           SQE+GTLITALG GIG+D ++I+KLRYH IIIM
Sbjct: 358 SQEVGTLITALGCGIGRDEYNIDKLRYHNIIIM 390


>gi|157073785|dbj|BAF79891.1| gyrase B [Methylobacterium extorquens]
 gi|157073787|dbj|BAF79892.1| gyrase B [Methylobacterium extorquens]
          Length = 399

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 248/399 (62%), Positives = 310/399 (77%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+ LKLRI R G  + M F +G    PL V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS++ F++ +F+Y TL+ RLREL+FLNS V+I + D R  E +   + Y+GG+E
Sbjct: 61  TEVTFLPSTETFTMTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKREELCYEGGVE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M  P+ + G RD I +++A+ WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPVDGMTKPVTVLGERDGIRVEVALWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQ+T Y E S  +K++K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|41387042|gb|AAS01479.1| GyrB [Bacillus sp. H-01]
          Length = 390

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 192/393 (48%), Positives = 277/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R +QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHSQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ T+ITA+GT IG D FDI K RYHK+II
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHKVII 390


>gi|164690657|dbj|BAF98612.1| gyrase B [Sporolactobacillus nakayamae subsp. racemicus]
          Length = 389

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 192/393 (48%), Positives = 269/393 (68%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ + +++ R G++Y   +  G     L + G + + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTKMWVKVYRNGHVYYQEYHRGKPAADLKIIGDS-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDT-LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF+         L+ R+REL+FLN +++IS+ D+R  E ++ T  Y+GGI
Sbjct: 60  TTTHFDPDPEIFTDTTTFDYDTLRVRVRELAFLNKNIRISIEDRR-EEDKQETFHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V YL+R K+ + Q    ++G +D I +++AM++N G+   +  F NNI   +GGTH 
Sbjct: 119 RSYVEYLNRSKEVIHQPID-LEGEKDGIKVEIAMQYNSGFASQLYSFANNIHTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G + ALTR I  Y  K    K    ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 178 YGFKVALTRVINDYARKKQFVKSSDPNLTGDDVREGLTAIVSIKHPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR++ ++  ++  S +L E+P  A++I++K + AS  R AA++AR+LTRRK  L+I+S
Sbjct: 238 SEVRAITDTLFSEAFSRFLLENPDVARLIIEKGIVASRARTAAKKARELTRRKSSLEISS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRLFQAILPLRGKILNVEKARLDRIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITALGTGIG D F+++K RYHKIII
Sbjct: 358 SNAEIRAMITALGTGIG-DEFNLDKARYHKIII 389


>gi|126035312|gb|ABN72409.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 382

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 230/384 (59%), Positives = 296/384 (77%), Gaps = 4/384 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRF 59

Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV 
Sbjct: 60  WPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+
Sbjct: 118 YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 178 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKL
Sbjct: 238 AVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYH 498
            TLITALG GIG+D ++ +KLRYH
Sbjct: 358 ATLITALGCGIGRDEYNPDKLRYH 381


>gi|269799066|gb|ACZ43811.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 348

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 196/349 (56%), Positives = 259/349 (74%), Gaps = 4/349 (1%)

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           ++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGVGVSV
Sbjct: 1   IHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSV 60

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS + F+   F
Sbjct: 61  VNALSKKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTNTLF 119

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K P+ +  
Sbjct: 120 HYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTPINKDA 178

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK
Sbjct: 179 FHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEK 238

Query: 307 SFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
               KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L+
Sbjct: 239 EGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLA 298

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            +L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LPGKL
Sbjct: 299 EYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKL 347


>gi|115500936|dbj|BAF34138.1| B subunit gyrase [Pseudomonas sp. CYN01B]
          Length = 388

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 225/391 (57%), Positives = 297/391 (75%), Gaps = 4/391 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y+VSGGLHGVGVSVVNALS  L+L I+R G ++E  +++G+   PL V G   + TG
Sbjct: 1   DNTYRVSGGLHGVGVSVVNALSEELRLTIRRAGQVWEQVYVHGVPQAPLAVIGET-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+V F PS++ FS   F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQVHFKPSAETFSNIQFSWDILAKRIRELSFLNSGVGIVLRDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K  + +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVDYLNTNKTAVNEVFHFQVQREDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            GLRSALTR + +Y+E    +KK K +  GDD REG T+++ +K+PDP+FSSQTK+KLVS
Sbjct: 178 GGLRSALTRNLNNYIEAEGLAKKFKVATTGDDAREGLTAIIRVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           SSQE+GTLITALG GIG++ F+I+KLRYH I
Sbjct: 358 SSQEVGTLITALGCGIGREEFNIDKLRYHNI 388


>gi|317420190|emb|CBW30252.1| gyrase B subunit [Pseudoalteromonas aliena]
          Length = 387

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 230/389 (59%), Positives = 300/389 (77%), Gaps = 6/389 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL V G +   TGTE+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGDSE-TTGTELRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS + F+  DF+Y+ L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV Y
Sbjct: 60  WPSGETFTNLDFHYEILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIQAFVEY 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L+R+K P+ +        R+   IS++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 LNRNKTPIHKGVFHFTHEREEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           SALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 SALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  + +  + +L E+P++AKI+V K++DAS  R+AAR+AR++TRRKG +D+A  P
Sbjct: 239 VKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGXP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKI 500
           QE+ TLITALG GIG+D ++  KLRYH+I
Sbjct: 359 QEVATLITALGCGIGRDEYNPEKLRYHRI 387


>gi|11078701|dbj|BAB17355.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 388

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 224/391 (57%), Positives = 296/391 (75%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ F    F++D L  R+RELSFLNS V I L ++RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKEERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG+D ++I+KLRYH II
Sbjct: 358 SQEVGTLITALGCGIGRDEYNIDKLRYHNII 388


>gi|302024210|ref|ZP_07249421.1| DNA gyrase subunit B [Streptococcus suis 05HAS68]
          Length = 320

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 141/322 (43%), Positives = 207/322 (64%), Gaps = 8/322 (2%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++ I++       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+AD I V +  D S TV DNGRGIP D+ ++ G  A E + T LHAGGKF    YK
Sbjct: 60  ALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + + G +Y   +  G +   L V G   + +GT V F
Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHF 178

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            P  +IF+    F++  L  R++EL+FLN  + +S+ DKR    +     Y+GGI ++V 
Sbjct: 179 TPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKEYHYEGGIASYVE 238

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K  + ++PI  +G  D+I++++AM++   YHENV+ F NNI   +GGTH  G R+
Sbjct: 239 YLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298

Query: 295 ALTRQITSYVEKSFGSKKDKRS 316
           ALTR I  Y +K+   K+++ +
Sbjct: 299 ALTRVINDYAKKNKILKENEDN 320


>gi|159146580|gb|ABW90734.1| DNA gyrase beta subunit [Vibrio chagasii]
          Length = 383

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 229/385 (59%), Positives = 296/385 (76%), Gaps = 3/385 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ 
Sbjct: 1   RVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIGDT-DQTGTEIR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS + FS   F+YD L  RLRELSFLNS V I LID+R  E +     ++GGI+AFV 
Sbjct: 60  FWPSEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGIQAFVD 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 HLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 AALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VE  + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG LD+A LPGK
Sbjct: 239 SAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 299 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 358

Query: 474 IGTLITALGTGIGQDSFDINKLRYH 498
           + TLITALG GIG+D ++ +KLRYH
Sbjct: 359 VATLITALGCGIGRDEYNPDKLRYH 383


>gi|237502647|gb|ACQ94972.1| DNA gyrase subunit B [Bacillus thuringiensis]
          Length = 391

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 200/393 (50%), Positives = 275/393 (69%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS W+++ +K+   I+ M F  G  D  L V G    +TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSEWMEVEVKQNNKIHYMRFTVGTPDADLAVIGETE-ETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+VTF P   IF+    F YD LQ R+REL+FLN  ++I+L D R  + RE +  Y+GGI
Sbjct: 60  TKVTFKPDPTIFTETTVFEYDVLQKRIRELAFLNKGLRITLKDTRPDQEREESFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV YL+++++PL +  I  +G +D + +++A+++ND Y  N+  F NNI   +GGTH 
Sbjct: 120 VQFVEYLNKNREPLHEEVIYCEGEKDGLFVEVALQYNDSYVSNIYSFANNINTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +++LTR I  Y  K    K+   ++ GDD REG T+++S+K+ +P+F  QTK KL +
Sbjct: 180 TGFKTSLTRVINDYSRKFNLLKEKDPNLSGDDVREGITAIISVKIQEPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE RS+ ES   D  S ++EE+P  AK +V+K L AS  R+AAR+AR++TRRK  L++++
Sbjct: 240 SEARSITESVFGDRFSTFMEENPGVAKKVVEKALMASRAREAARKAREMTRRKSALEVSA 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D  +SELF+VEGDSAGGSAK GR R  QAILPLRGK+LNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDASESELFIVEGDSAGGSAKSGRDRHFQAILPLRGKVLNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            + EI  +ITALGTG+G+D FDI K RYHK++I
Sbjct: 360 GNNEIRMIITALGTGVGED-FDITKARYHKVVI 391


>gi|164690659|dbj|BAF98613.1| gyrase B [Sporolactobacillus terrae]
          Length = 389

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 192/393 (48%), Positives = 269/393 (68%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ + +++ R G++Y   +  G     L + G + + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTTMWVKVYRNGHVYYQEYHRGKPAADLKIIGDS-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDT-LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF+         L+ R+REL+FLN +++IS+ D+R  E ++ T  Y+GGI
Sbjct: 60  TTTHFEPDPEIFTDTTTFDYDTLRVRVRELAFLNKNIRISIEDRR-AEDKKETFHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+R K+ + Q    ++G +D I +++AM++N G+   +  F NNI   +GGTH 
Sbjct: 119 RSYVEFLNRSKEVIHQPID-LEGEKDGIKVEIAMQYNSGFSSQLYSFANNIHTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G + ALTR I  Y  K+   K    ++ GDD REG T+++S+K PDP+F  QTK KL +
Sbjct: 178 YGFKVALTRVINDYGRKNQFIKGSDSNLTGDDVREGLTAIVSVKHPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR++ ++  ++  S +L E+P  A+IIV+K + AS  R AA++AR+LTRRK  L+++S
Sbjct: 238 SEVRTITDTLFSEAFSRFLLENPDVARIIVEKGIVASRARSAAKKARELTRRKSSLEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRLFQAILPLRGKILNVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITALGTGIG D F++ K RYHKIII
Sbjct: 358 SNAEIRAMITALGTGIG-DEFNLEKARYHKIII 389


>gi|126035222|gb|ABN72364.1| gyrase B subunit [Escherichia coli]
 gi|126035224|gb|ABN72365.1| gyrase B subunit [Escherichia coli]
          Length = 383

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 231/385 (60%), Positives = 296/385 (76%), Gaps = 4/385 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVR 59

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV
Sbjct: 60  FWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 118 EYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGK
Sbjct: 238 SAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 298 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 357

Query: 474 IGTLITALGTGIGQDSFDINKLRYH 498
           + TLITALG GIG+D ++ +KLRYH
Sbjct: 358 VATLITALGCGIGRDEYNPDKLRYH 382


>gi|145309468|dbj|BAF56637.1| DNA gyrase subunit B [Alicyclobacillus sendaiensis]
          Length = 389

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 199/393 (50%), Positives = 274/393 (69%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVG SVVNALS W+++ + R+G+IY   +  G     L V G   + TG
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWMRVEVHRDGHIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y GG+
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L   PI +   +D++++++A+++NDGY   V  F NNI   +GGTH 
Sbjct: 119 AEFVRWLNQSKNVLFDDPIYVSAVKDDVAVEIALQYNDGYTATVYSFANNINTVEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRHGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE+   + +  +LEE+P  A+ IV K + A+  R+AARRAR+LTR K  +D+ S
Sbjct: 239 SEVRGIVETLFAERMQIFLEENPAIARKIVDKCILAARAREAARRARELTRSK-KMDVTS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +++EI  +ITA GTGIG D FDI+K RYHKI+I
Sbjct: 358 ANEEIRAIITACGTGIG-DDFDISKARYHKIVI 389


>gi|288801769|ref|ZP_06407211.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
 gi|288335811|gb|EFC74244.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
          Length = 624

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 147/546 (26%), Positives = 249/546 (45%), Gaps = 57/546 (10%)

Query: 21  LDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           ++ V+ RP MYIG          G++ ++ EV+DN+IDE      D I + +  +   +V
Sbjct: 1   MEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDEFKMNAGDRIEIDVEDNLRVSV 60

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            D GRGIP            E + + L+ GGK++ K++K S GL+GVGV  VNALSS  +
Sbjct: 61  RDYGRGIPQGK-------LVEAV-SVLNTGGKYDSKAFKKSVGLNGVGVKAVNALSSHFE 112

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           ++  R+G + E+SF  G L +    T  + ++ GT + F P + +F    F+ D ++  L
Sbjct: 113 VKSFRDGKVRELSFEKGNLQSD--KTKKSADENGTYIYFEPDATLFKNYSFHDDIVEEML 170

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           R  ++LN+ + I    +R             G++  ++         +   + ++G    
Sbjct: 171 RNYTYLNTGLTIMYNGRRILSRH--------GLKDLLTDNMTV--DPLYPIVHMKGED-- 218

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             I++A    + Y E    F N      GGTH +  +  + + I  +  K          
Sbjct: 219 --IEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAFKEHIAKTIKEFFGKYEY------- 269

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-----------VVESFVNDGLS 365
               D R G  + +++ + +P F SQTK KL S+++              +++ V++ L 
Sbjct: 270 ---GDIRNGLVAAIAVNVEEPVFESQTKIKLGSTQMSPDGESINKYVGDFIKTNVDNYLH 326

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI---ASLPGKLADCSERDP 422
              E+     +  +K+            +      +K  L             D      
Sbjct: 327 IHKEDFTDILENKIKETERERKAMAGVTKLARERAKKANLHNRKLRDCRVHYCDVKNDRK 386

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           ++S +F+ EGDSA GS  + R    QA+  LRGK LN        +  ++E   L  AL 
Sbjct: 387 EESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNCFGLTKKVVYENEEFNLLQAALD 446

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
              G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  P LI  G +Y+++ PL+
Sbjct: 447 IEDG-----LDSLRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIKKGHVYVLQTPLF 501

Query: 543 GITRGK 548
            +   +
Sbjct: 502 RVRNRR 507


>gi|113912341|gb|ABI48367.1| DNA gyrase subunit B [Pseudomonas fragi]
          Length = 393

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 228/390 (58%), Positives = 298/390 (76%), Gaps = 3/390 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VDYLNTNKNPVNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +    S +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LDIA LPG
Sbjct: 238 KTAVEQEMGKFFSDFLLEHPNEAKLIVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQ
Sbjct: 298 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+GTLITALG GIG++ ++I+KLRYH III
Sbjct: 358 EVGTLITALGCGIGREEYNIDKLRYHNIII 387


>gi|130373027|emb|CAM57279.1| DNA gyrase subunit B [Yersinia sp. Y55]
          Length = 381

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 230/384 (59%), Positives = 295/384 (76%), Gaps = 4/384 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI AFV 
Sbjct: 60  WPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLNKNKTPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYH 498
            TLITALG GIG+D ++ +KLRYH
Sbjct: 358 ATLITALGCGIGRDEYNPDKLRYH 381


>gi|332800609|emb|CBY89794.1| GyrB protein [Flavobacterium tegetincola]
          Length = 405

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 188/401 (46%), Positives = 261/401 (65%), Gaps = 7/401 (1%)

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFIN 152
           SA EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +GNIYE  +  
Sbjct: 1   SALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGNIYEQEYEK 60

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLI 211
           G    P+   G      GT VTF P   IF+   D++YDTL  R+RELSFLN  + I+  
Sbjct: 61  GKALYPVKQIGQTT-KRGTIVTFYPDPSIFTQTIDYSYDTLSARMRELSFLNKGITITFT 119

Query: 212 DKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           DKR                 G++ ++ YLD +++P++   I +   +  I +++A+ +N 
Sbjct: 120 DKRELDKDGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDSDKGEIPVEVALIYNT 179

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T
Sbjct: 180 SYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLT 239

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +A+IIV+KV+ A+ 
Sbjct: 240 AIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARIIVQKVILAAQ 299

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  
Sbjct: 300 ARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRNF 359

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 360 QAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTIGTE 400


>gi|164608596|gb|ABY62589.1| DNA gyrase beta subunit [Aliivibrio logei]
          Length = 388

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 231/390 (59%), Positives = 299/390 (76%), Gaps = 4/390 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  ++L I R G +++  + +G+   PL V G   + TGT++
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVELTINRRGEVFQQIYCHGVPQAPLAVIG-TTDTTGTKI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     ++GGI+AFV
Sbjct: 60  RFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFMFEGGIKAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           ++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG HLSG
Sbjct: 119 THLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDIA LP
Sbjct: 239 VKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SS
Sbjct: 299 GKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+GTLITALG GIG+D ++ +KLRYH II
Sbjct: 359 QEVGTLITALGCGIGRDEYNPDKLRYHNII 388


>gi|164690651|dbj|BAF98609.1| gyrase B [Sporolactobacillus laevolacticus]
          Length = 385

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 195/389 (50%), Positives = 268/389 (68%), Gaps = 5/389 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ + +++   G++Y   +  G     L + G +   TGT   
Sbjct: 1   KVSGGLHGVGASVVNALSTKMWVKVYLNGHVYYQEYRRGKPVADLKIIGDSE-RTGTTTH 59

Query: 175 FLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P  +IF+    F+YDTL+ R+REL+FLN +++IS+ DKR  E ++ T  Y+GGI ++V
Sbjct: 60  FEPDPEIFTETTIFDYDTLRVRVRELAFLNKNIRISIEDKR-EEDKKETFHYEGGIRSYV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+R K+ + Q    ++G +D I +++AM++N G+   +  F NNI   +GGTH  G +
Sbjct: 119 EFLNRSKEVIHQPID-LEGEKDGIKVEIAMQYNSGFSSQLYSFANNIHTHEGGTHEYGFK 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR I  Y  K    K    ++ GDD REG T+++S+K PDP+F  QTK KL +SEVR
Sbjct: 178 VALTRVINDYARKKQFIKSSDANLTGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVR 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           ++ ++   +  S +L E+P  AK+IV+K + AS  R AA++AR+LTRRK  L+I+SLPGK
Sbjct: 238 TITDTLFTESFSRFLLENPDVAKLIVEKGIVASRARTAAKKARELTRRKSSLEISSLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+LS+ E
Sbjct: 298 LADCSSKDASISELYIVEGDSAGGSAKQGRDRMFQAILPLRGKIINVEKARLDKILSNAE 357

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIII 502
           I  +ITALGTGIG D F + K RYHKIII
Sbjct: 358 IRAMITALGTGIG-DEFTLEKARYHKIII 385


>gi|51571561|emb|CAH18947.1| gyrase B [Corallococcus exiguus]
          Length = 392

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 209/395 (52%), Positives = 282/395 (71%), Gaps = 3/395 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+R++R G +YE S+  G+ +      G+     GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVANGSPQEVGTTDKL-GT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P + +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  TIHFKPDTQVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARLAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            EI TLITALGTGIG + +D  K RYH+II+MTDA
Sbjct: 358 AEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|12644440|sp|Q44080|GYRB_ACIJU RecName: Full=DNA gyrase subunit B
 gi|4514423|dbj|BAA75410.1| DNA gyrase subunit B [Acinetobacter junii]
          Length = 388

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 231/391 (59%), Positives = 285/391 (72%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+R G I+E  + +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIQRAGQIHEQEYCHGDPQYPLKVVGET-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   F+ D L  RLRELSFLN+ V+I L D+R           +GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLENVYDY--EGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTTDADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAARRAR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARRAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG++ ++ +KLRYHKII
Sbjct: 358 SQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|189909565|gb|ACE60642.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 385

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 191/386 (49%), Positives = 273/386 (70%), Gaps = 3/386 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L + G   + TGT   F
Sbjct: 1   VSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TGTTTHF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V 
Sbjct: 60  VPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVE 119

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++
Sbjct: 120 YLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKT 179

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R+
Sbjct: 180 GLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 239

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           + ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKL
Sbjct: 240 ITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKL 299

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+
Sbjct: 300 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 359

Query: 475 GTLITALGTGIGQDSFDINKLRYHKI 500
            ++ITALGTGIG+D F++ K RYHK+
Sbjct: 360 RSMITALGTGIGED-FNLEKARYHKV 384


>gi|145309497|dbj|BAF56646.1| DNA gyrase subunit B [Alicyclobacillus macrosporangiidus]
          Length = 389

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 197/393 (50%), Positives = 271/393 (68%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS W+K+ + R+G IY   +  G +   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEWMKVEVHRDGKIYVQEYQRGEVMYDLKVIGET-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ + LQ+RLREL+FLN+ ++I L D+R  +         GG+
Sbjct: 60  TKVSFKPDPEIFTETTTFDSEVLQNRLRELAFLNAGLEIVLEDEREDKRYVYHY--TGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L+R K  L   P+ + G +D +++++A+++N+GY   +  F NNI   +GG H 
Sbjct: 118 AEFVKFLNRTKDVLHSEPVFVSGVKDEVTVEIALQYNEGYSTTLFSFANNIHTHEGGAHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ALTR I  Y  K    K+++ +  GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 AGFKTALTRVINDYGRKMNLIKENESNPTGDDVREGLTAIVSVKVPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +V+   ++   A+LEE+P  AK IV K L A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 238 SEVRGIVDGLFSERFQAFLEENPAVAKRIVDKCLTAARAREAARKARELTRRKSALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ +D    EL+LVEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLADCASKDASVCELYLVEGDSAGGSAKQGRDRNFQAILPLRGKIINVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITALGTGIG D FDI K RYHKI+I
Sbjct: 358 SNNEIRAIITALGTGIG-DDFDITKARYHKIVI 389


>gi|145975397|gb|ABQ00176.1| GyrB [Listonella anguillarum]
 gi|145975399|gb|ABQ00177.1| GyrB [Listonella anguillarum]
 gi|145975401|gb|ABQ00178.1| GyrB [Listonella anguillarum]
 gi|145975403|gb|ABQ00179.1| GyrB [Listonella anguillarum]
          Length = 384

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 224/386 (58%), Positives = 298/386 (77%), Gaps = 3/386 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + TGT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV 
Sbjct: 60  FWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFRYEGGIKAFVG 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+R+K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G R
Sbjct: 119 HLNRNKTPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 GALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES + + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 239 SAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 299 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 358

Query: 474 IGTLITALGTGIGQDSFDINKLRYHK 499
           + TLITALG GIG+D ++ +KLRYH 
Sbjct: 359 VATLITALGCGIGRDEYNPDKLRYHN 384


>gi|38224369|gb|AAR14133.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp. necrophorum]
          Length = 403

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 181/402 (45%), Positives = 263/402 (65%), Gaps = 2/402 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGND 168
              YKVSGGLHGVG+SVVNALS W ++++KREGN+Y   ++ G     + +      G  
Sbjct: 2   NDDYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGET 61

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  +IF    F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +  ++GG
Sbjct: 62  TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGG 121

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  F+  + R  + L+   I I+G  + + +D+A  +  G  E +  F NNI   +GG+H
Sbjct: 122 ISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEVIYSFVNNINTTEGGSH 181

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ LT+ I    +     K+    +      +    ++S+K+P P+F  QTK KL 
Sbjct: 182 VTGFRTCLTKVINDIGKSQGFLKEKDGKLQEATFGKELWLIISVKVPPPQFEGQTKTKLG 241

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEV  +V + ++  L  +LE++P + K+I++K+L +   R+AA+RAR+   RK VL++ 
Sbjct: 242 NSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSVLEVG 301

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADCS + P++ E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K 
Sbjct: 302 SLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKA 361

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           L S EI  ++TA GT IG++SFD+ KLRY KII+MTDADVDG
Sbjct: 362 LESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 403


>gi|11078699|dbj|BAB17354.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 387

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 225/390 (57%), Positives = 295/390 (75%), Gaps = 3/390 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS + F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFRPSDETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           SQE+GTLITALG GIG+D ++I+KLRYH I
Sbjct: 358 SQEVGTLITALGCGIGRDEYNIDKLRYHNI 387


>gi|11078695|dbj|BAB17352.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 388

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 226/391 (57%), Positives = 297/391 (75%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG+D ++I+KLRYH II
Sbjct: 358 SQEVGTLITALGCGIGRDEYNIDKLRYHNII 388


>gi|300068744|dbj|BAJ10555.1| DNA gyrase subunit B [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius]
          Length = 389

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 198/393 (50%), Positives = 273/393 (69%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVG SVVNALS WL++ + R+G+IY   +  G     L V G   + TG
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWLRVEVHRDGHIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y GG+
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLANRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L   PI +   +D++++++A+++NDG+   V  F NNI   +GGTH 
Sbjct: 119 AEFVHWLNQSKDVLFDDPIYVSAVKDDVAVEIALQYNDGFSATVYSFANNINTAEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRFGMLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE+   + +  +LEE+P  A+ IV K + A+  R+AARRAR+LTR K  +D+ S
Sbjct: 239 SEVRGIVETLFAERMQIFLEENPSIARKIVDKCILAARAREAARRARELTRSK-KMDVTS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DC  +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLTDCGSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +++EI  +ITA GTGIG D FDI+K RYHKI+I
Sbjct: 358 ANEEIRAIITACGTGIG-DDFDISKARYHKIVI 389


>gi|330898605|gb|EGH30024.1| DNA gyrase subunit B [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 173

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 107/177 (60%), Positives = 140/177 (79%), Gaps = 4/177 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +YD+ SI++LKGLDAV+KRP MYIGDTD  SGLHHM++EV+DN+IDE+L G+
Sbjct: 1   MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 58  CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKP 173


>gi|157073783|dbj|BAF79890.1| gyrase B [Methylobacterium extorquens]
          Length = 399

 Score =  346 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 248/399 (62%), Positives = 310/399 (77%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+ LKLRI R G  + M F +G    PL V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS++ F++ +F+Y TL+ RLREL+FLNS V+I + D R  E +   + Y+GG+E
Sbjct: 61  TEVTFLPSTETFTMTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKREELCYEGGVE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M  P+ + G RD I +++A+ WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPVDGMTKPVTVLGERDGIRVEVALWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQ+T Y E S  +K++K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|198042702|gb|ACH81176.1| GyrB [Pseudoalteromonas sp. UST981101-004]
          Length = 381

 Score =  346 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 227/383 (59%), Positives = 296/383 (77%), Gaps = 6/383 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL V G +   T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGDSE-TT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI
Sbjct: 60  GTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           +AFV Y++R+K P+ +        R    IS++++M+WND Y EN+ CFTNNIPQ+DGGT
Sbjct: 119 QAFVEYINRNKTPIHKGVFHFTHERVEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGT 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           HL+G RSALTR + +++EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+
Sbjct: 179 HLAGFRSALTRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPDPKFSSQTKD 238

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV+S VE  + +  + +L E+P++AKI+V K++DAS  R+AAR+AR++TRRKG +
Sbjct: 239 KLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGAM 298

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARF
Sbjct: 299 DLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 358

Query: 466 DKMLSSQEIGTLITALGTGIGQD 488
           DKMLSSQE+ TLITALG GIG+D
Sbjct: 359 DKMLSSQEVATLITALGCGIGRD 381


>gi|308153148|dbj|BAJ22163.1| DNA gyrase subunit B [Shewanella sp.]
          Length = 391

 Score =  346 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 231/394 (58%), Positives = 300/394 (76%), Gaps = 5/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  +  G  D P+   G A   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLQLTIRRNGKLYEQFYTMGEPDAPIKEIGDAT-STG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           TE+ F PS + F +  +F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI
Sbjct: 60  TELRFWPSHETFTNNIEFHFDILVKRVRELSFLNSGVGIRLVDER--DNRDEFFQYQGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFV YL+ +K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVDYLNVNKTPINKDVFHFIHERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR + +Y+E+   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + + L  +L EHP EA++IV K++DA+  R+AAR+AR++TRRKG LD+ 
Sbjct: 238 SSEVKSAVEQTMGEKLGDYLMEHPTEARLIVGKIIDAARAREAARKAREMTRRKGALDLG 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LSSQE+ TLITALG GIG+D +D +K RYH I+I
Sbjct: 358 LSSQEVATLITALGCGIGRDEYDPDKTRYHNIVI 391


>gi|21730596|pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With
           Clorobiocin
          Length = 205

 Score =  346 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 122/206 (59%), Positives = 147/206 (71%), Gaps = 2/206 (0%)

Query: 20  GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDN 79
           GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+
Sbjct: 1   GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 60

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I
Sbjct: 61  GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI 120

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRE 198
           +REG I+   + +G+   PL VTG     TGT V F PS + F+   +F Y+ L  RLRE
Sbjct: 121 QREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVTEFEYEILAKRLRE 179

Query: 199 LSFLNSSVQISLIDKRSPEPREITMF 224
           LSFLNS V I L DKR  +       
Sbjct: 180 LSFLNSGVSIRLRDKRDGKEDHFHYE 205


>gi|121892|sp|P22840|GYRB_PROMI RecName: Full=DNA gyrase subunit B
 gi|150881|gb|AAA83961.1| DNA gyrase beta-subunit [Proteus mirabilis]
          Length = 182

 Score =  346 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 109/177 (61%), Positives = 139/177 (78%), Gaps = 1/177 (0%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L GY D I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCDEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVRDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           VVNALS  L+L I R+G I++  + +G+ D+ L V G   + +GT V F PS D F 
Sbjct: 122 VVNALSEKLELTIHRDGKIHQQIYRSGVPDDRLKVIGET-DKSGTFVRFWPSLDTFK 177


>gi|19909687|dbj|BAB87039.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 305

 Score =  346 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 153/306 (50%), Positives = 205/306 (66%), Gaps = 19/306 (6%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISA 95
           GLHH+++EVLDN+IDE+L GY + I VT++ D S +V+DNGRGIPTD+      E   SA
Sbjct: 1   GLHHLVFEVLDNSIDEALAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSA 60

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AE++MT LHAGGKF+Q SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  GI 
Sbjct: 61  AEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGIA 120

Query: 156 ------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
                        +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN
Sbjct: 121 QDRVLEQVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLN 179

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           + V+I L D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM
Sbjct: 180 NGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAM 237

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD R
Sbjct: 238 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 297

Query: 324 EGFTSV 329
           EG + V
Sbjct: 298 EGLSCV 303


>gi|41387064|gb|AAS01487.1| GyrB [Bacillus sp. H-18]
          Length = 390

 Score =  346 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 191/393 (48%), Positives = 276/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEG SAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGGSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ T+ITA+GT IG D FDI K RYHK+II
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHKVII 390


>gi|51571579|emb|CAH18956.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  346 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 211/395 (53%), Positives = 280/395 (70%), Gaps = 3/395 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            + KVSGGLHGVGV+ VN L+ W K+RI+R G ++E  +  G+ D+P    G   +  GT
Sbjct: 1   GAXKVSGGLHGVGVTCVNFLAEWFKVRIQRNGKVFEQGYARGVPDSPPREVG-TTDKRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P   I    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  MIHFKPDPTIMETADFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGIAS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K  L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKTALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +SALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKSALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARIAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KMLSS
Sbjct: 298 GKLADCQSRDPXESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            EI TLITALGTGIG + +D  K RYH+II+MTDA
Sbjct: 358 AEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|300068735|dbj|BAJ10552.1| DNA gyrase subunit B [Alicyclobacillus sp. P2]
          Length = 389

 Score =  346 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 198/393 (50%), Positives = 273/393 (69%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVG SVVNALS WL++ + R+G+IY   +  G     L V G   + TG
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWLRVEVHRDGHIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y GG+
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLANRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L   PI +   +D++++++A+++NDG+   V  F NNI   +GGTH 
Sbjct: 119 AEFVRWLNQSKDVLFDDPIYVSAVKDDVAVEIALQYNDGFSATVYSFANNINTAEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRFGMLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE+   + +  +LEE+P  A+ IV K + A+  R+AARRAR+LTR K  +D+ S
Sbjct: 239 SEVRGIVETLFAERMQIFLEENPSIARKIVDKCILAARAREAARRARELTRSK-KMDVTS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DC  +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLTDCGSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +++EI  +ITA GTGIG D FDI+K RYHKI+I
Sbjct: 358 ANEEIRAIITACGTGIG-DDFDISKARYHKIVI 389


>gi|148611308|gb|ABQ95841.1| DNA gyrase subunit B [Acidiphilium sp. SB6]
          Length = 400

 Score =  346 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 233/402 (57%), Positives = 296/402 (73%), Gaps = 9/402 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVG +VVNALS W+++RI R+G  + + F NG    PL V G++ + T
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
            T VTF PS+  F+  +F++   + RLREL+FLNS + I+L D+R    +E    Y+GG+
Sbjct: 61  RTSVTFRPSAATFTRTEFDFAIYERRLRELAFLNSGLTINLRDERHSAVQEAHFRYEGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
             FVS+LDR K  L   P+          I ++ A+ WND YHE +LCFTNNI Q+DGGT
Sbjct: 121 VEFVSWLDRAKTQLFSPPVTAFKDDAPGGIKVEFALAWNDTYHETMLCFTNNIVQRDGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G RSALTR ++ Y E          S+ G+D REG T+VLS+K+PDP+FSSQTK+KL
Sbjct: 181 HLAGFRSALTRVVSKYAESLGKKDS--LSLSGEDMREGLTAVLSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+ +V++ V D L  W E HP E ++I +KV+DA+  R+AAR+AR+LTRRKGVLDI
Sbjct: 239 VSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRKGVLDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+
Sbjct: 299 STLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 358

Query: 468 MLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMT 504
           ML S EIGTLITALGTGIG     Q  FDI+KLRYH+I+IMT
Sbjct: 359 MLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|328349721|emb|CBY89168.1| GyrB protein [Flavobacterium sp. R-38274]
          Length = 402

 Score =  346 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 184/396 (46%), Positives = 258/396 (65%), Gaps = 7/396 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGIL 155
           EV+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G +YE  +  G  
Sbjct: 1   EVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKA 60

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR 214
             P+   G      GT VTF P + IF+    F+YDTL  R+RELS+LN  + I+  DKR
Sbjct: 61  LYPVKQIGETT-KRGTIVTFYPDNTIFTQTTEFSYDTLSARMRELSYLNKGITITFTDKR 119

Query: 215 SPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
             +              G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y 
Sbjct: 120 EKDKDGNFVSEVFHSTEGLKEYIRYLDSNREPIIAHVISMDSDKGEIPVEVALIYNTSYT 179

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  V GDD REG T+++
Sbjct: 180 ENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEVSGDDFREGLTAII 239

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ +P+F  QTK KL + EV S V   V D + ++LEE+P +A+IIV+KV+ A+  R 
Sbjct: 240 SVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIESYLEENPNDARIIVQKVILAAQARH 299

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA++AR++ +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAI
Sbjct: 300 AAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAI 359

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LPLRGKILNVE+A   K+  ++EI  + TALG  IG
Sbjct: 360 LPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIG 395


>gi|13359144|dbj|BAB33303.1| DNA gyrase B subunit [Marinobacterium stanieri]
          Length = 386

 Score =  346 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 222/389 (57%), Positives = 295/389 (75%), Gaps = 3/389 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +YKVSGGLHGVGVSVVNALSS LKL I+R G ++E  + +G+ + PL + G   + TGT 
Sbjct: 1   TYKVSGGLHGVGVSVVNALSSDLKLTIRRAGQVHEQIYHHGVPEEPLKIVGET-DLTGTI 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F PS + F+   F YD L  RLRELSFLNS V+I L D+RS   RE    Y+GG+ AF
Sbjct: 60  VRFKPSEETFTNIQFQYDILAKRLRELSFLNSGVRIRLKDERSG--REEVFEYEGGLAAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+++K P+ +         + + ++++M+WND + E++ CF NNIPQ+DGGTHLSG 
Sbjct: 118 VEFLNQNKSPVNKIFHFNAMHENGVGVEVSMQWNDSFQESLHCFANNIPQRDGGTHLSGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR + +Y+E    +K  K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RTALTRCLNNYIESEQLNKTGKVSTSGDDSREGLTAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +   L+ +L E+P +AK +V+K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 238 KTAVEQMMGQFLNEYLLENPQDAKAVVQKMIDAARAREAARKAREMTRRKGALDVAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKML+S 
Sbjct: 298 KLADCQEKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLTSA 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKII 501
           E+GTLITALG GIG++ F+ +KLRYH+II
Sbjct: 358 EVGTLITALGCGIGREEFNPDKLRYHRII 386


>gi|157073809|dbj|BAF79903.1| gyrase B [Methylobacterium thiocyanatum]
          Length = 399

 Score =  346 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 249/399 (62%), Positives = 308/399 (77%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+ L LRI R G  + M F +G    PL V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTSLMLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+E
Sbjct: 61  TEVTFLPSTETFTMTEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELCYEGGVE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M  P+ + G RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPVDGMAKPVTVLGERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQ+T Y E S  +KK+K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQLTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|148222806|ref|NP_001082502.1| topoisomerase (DNA) II alpha 170kDa [Xenopus laevis]
 gi|47939759|gb|AAH72193.1| LOC398512 protein [Xenopus laevis]
          Length = 1579

 Score =  346 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 149/743 (20%), Positives = 273/743 (36%), Gaps = 73/743 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 32  YQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDEGLNCRDITFVPGLYKIFDEILVNAA 91

Query: 54  DESLEGYA-DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I +T++ D  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 92  DNKQRDPTMSCIKITIDPDNNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 151

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   I++ ++ N + + P         + 
Sbjct: 152 DQKKVTGGRNGYGAKLCNIFSNKFTVETACREYKKIFKQTWTNNMSNAPDPKIKPFEGED 211

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++  +  V++ L  KR            
Sbjct: 212 FTCITFQPDLSKFKMQILDKDIVALMSRRAYDVAGSSKGVKVFLNGKR---------LPV 262

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G   +V    + K     +P ++   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 263 SGFRTYVEMYLKDKLDETGNPFKVMHEQVNDRWEVCLTMSEKGFQQI-SFVNSIATTKGG 321

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   SV     +      ++  + +P F SQTKE 
Sbjct: 322 RHVDYVADQIVTKLIDVVKKKN---KGGISVKPFQVKNHMWVFVNALIENPTFDSQTKEN 378

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                     + I+  V   +         +    +   + 
Sbjct: 379 M-TLQSKSFGSKCTLSEKFIKGATSCGIVESILNWVKFKAQ---TQLNKKCSAVKHTKIK 434

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   R+  +  L L EGDSA      G    GR R    + PLRGK+LNV 
Sbjct: 435 GIPKLDDANDAGSRNSLECTLILTEGDSAKTLAVSGLGVVGRDR--YGVFPLRGKLLNVR 492

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 493 EASHKQIMENAEINNIIKIVGLQYKKNYDDNESLRTLRYGKIMIMTDQDQDGSHIKGLLI 552

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
            F     PSL+ + FL     P+  +T+ K           E++      +         
Sbjct: 553 NFIHHNWPSLLKHCFLEEFITPIIKVTKNKQELSFYSIPEFEEWK-----NNTESHKTWK 607

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                        +       + +   P      I+ A I+  F+ +   +    L    
Sbjct: 608 IKYYKGLGTSTSKEAKEYFADMERHRIPFKYAGPIDDAAITMAFSRKKVDDRKEWLT--- 664

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
               NF+ ++ E+  HG       L  +  + +     +    I    S  +R   + ++
Sbjct: 665 ----NFMQDRRERRLHGLPEEY--LYGKSTKYLTFNDFINKELILFSNSDNERSIPSLVD 718

Query: 699 ENYLTILSLI----CNGDKIKIT 717
                   ++       DK ++ 
Sbjct: 719 GLKPGQRKVLFTCFKRNDKREVK 741


>gi|45478723|gb|AAS66626.1| DNA gyrase subunit B [Campylobacter fetus]
          Length = 390

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 195/396 (49%), Positives = 265/396 (66%), Gaps = 7/396 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           ++ +YKVSGGLHGVG SVVNALS  L L IKR+GN+Y   F  GI  N L       N T
Sbjct: 1   DKDTYKVSGGLHGVGASVVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F P  DIF V +F+   L  R +EL++LN   +I++  K   +    T  ++GG+
Sbjct: 60  GTSVEFWPDDDIFEVTEFDKQILSKRFKELAYLNP--RITINFKDQRDGFSETYHFEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           E+FV+  D +K   +   +   G  +++ +D A+ +N+ Y EN+L F NNI   DGGTH 
Sbjct: 118 ESFVT--DINKSNPVSKAVSFSGGEEDVIVDFALLYNETYTENLLSFVNNIKTPDGGTHE 175

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ LTR IT+Y+  +  +++    + GDD REG  +++S+K+P+P+F  QTK KL S
Sbjct: 176 AGFRAGLTRAITNYIAANAAAREKDTKITGDDIREGLIAIVSVKVPEPQFEGQTKGKLGS 235

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           S V+ +V+    D L  + EE+P+EAK I+ K L A+  R+AA++ARDLTR+K  L+   
Sbjct: 236 SYVKPIVQKMTFDVLCKYFEENPIEAKAIMNKALMAARGREAAKKARDLTRKKDSLNSVG 295

Query: 410 L-PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
             PGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+
Sbjct: 296 TLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKI 355

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           L S+EI  +ITA G GIG++ FD  KLRYHKIIIMT
Sbjct: 356 LKSEEIKNMITAFGFGIGEE-FDPEKLRYHKIIIMT 390


>gi|297517766|ref|ZP_06936152.1| DNA topoisomerase IV subunit B [Escherichia coli OP50]
          Length = 494

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 182/501 (36%), Positives = 273/501 (54%), Gaps = 10/501 (1%)

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R+G +Y ++
Sbjct: 1   EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIA 60

Query: 150 FINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F NG     L V G+    +TGT V F P    F    F+   L H L+  + L   V+I
Sbjct: 61  FENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEI 120

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA-MRWND 267
           +  D+ +   +      + G+  +++        L + P     + D  ++D A +   +
Sbjct: 121 TFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPE 178

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G       + N IP   GGTH++GLR  L   +  + E      +    +  +D  +   
Sbjct: 179 GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCA 237

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
            VLS+KM DP+F+ QTKE+L S +  + V   V D    WL ++   A+++ +  + ++ 
Sbjct: 238 YVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQ 297

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
                 RA     RK +    +LPGKLADC+ +D  ++ELFLVEGDSAGGSAKQ R RE 
Sbjct: 298 ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREY 354

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAI+PL+GKILN      D++L+SQE+  +  ++  GI  DS D+++LRY KI I+ DAD
Sbjct: 355 QAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGIDPDSDDLSQLRYGKICILADAD 412

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
            DG HI TLL   F +   +L+ +G +Y+  PPLY I  GK + Y   EE  E  L    
Sbjct: 413 SDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK 472

Query: 568 LSEEIELFCDSKGVISKNDLR 588
             +        KG+   N ++
Sbjct: 473 RKKGKPNVQRFKGLGEMNPMQ 493



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 76/238 (31%), Gaps = 43/238 (18%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +   + ++       + L   ++S        +K V+ K             D   +D
Sbjct: 269 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 328

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             +++ ++L
Sbjct: 329 LNR--TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN----------TWEVSSDEVL 376

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTIL-SLICN 710
             +    +     ++  S      +Y +I             +  +   ++    +L+ +
Sbjct: 377 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 436

Query: 711 GDKI-------KITGPCSLLDTIFSIGRKGI-----------SMQRYKGLGEMNASQL 750
           G          +I     +   +    ++G+           ++QR+KGLGEMN  QL
Sbjct: 437 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL 494


>gi|317448556|emb|CBW30250.1| gyrase B subunit [Pseudoalteromonas tetraodonis]
          Length = 390

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 233/388 (60%), Positives = 300/388 (77%), Gaps = 6/388 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I+REG ++E ++  G+ + PL V G A + TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPNAPLAVIGDA-DTTGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS + F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y GGI+AF
Sbjct: 60  LRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-EENKTDHFKYDGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           V YL+R+K P+ +        R+   IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 VEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 GFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + +  S +L E+P++AKI+V K++DA+  R+AAR+AR++TRRKG +D+A
Sbjct: 239 SSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLR 496
           LSSQE+ TLITALG GIG+D +D  KLR
Sbjct: 359 LSSQEVATLITALGCGIGRDEYDPEKLR 386


>gi|84310534|gb|ABC55415.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 390

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 187/392 (47%), Positives = 273/392 (69%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G ++   F  G+    L V G       
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGETEVTGT 60

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI
Sbjct: 61  TTH-FKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKRDGKERKNEYCYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R ++ + + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH 
Sbjct: 120 KSYVEHLNRSREVVHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LT  I  Y  ++   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTGVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++
Sbjct: 240 SEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVV 390


>gi|163256309|dbj|BAF95665.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3E]
          Length = 286

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 167/283 (59%), Positives = 207/283 (73%), Gaps = 2/283 (0%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           HM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+
Sbjct: 1   HMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQ 60

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V 
Sbjct: 61  LHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVV 120

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
           G A    GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D R    +   
Sbjct: 121 GDAPGRRGTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREE 180

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           M Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ
Sbjct: 181 MHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQ 240

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           +DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG
Sbjct: 241 RDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREG 281


>gi|157073799|dbj|BAF79898.1| gyrase B [Methylobacterium organophilum]
          Length = 399

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 250/399 (62%), Positives = 304/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+ LKLRI R G  + M F +G    PL V G AG   G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTCLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGERRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTF PS + FS+ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+E
Sbjct: 61  TEVTFYPSPETFSMIEFDYPTLEKRLRELAFLNSGVRIVLTDARHAEHKREELCYQGGVE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M  P+ + G RD I ++ A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPVEGMSKPVTVLGERDGIRVECAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTRQ+T Y E S  +KK+K ++ GDDCREG T+++S+++PDP+FSSQTK+KLV
Sbjct: 181 LAGFRAALTRQLTGYAESSGIAKKEKVALTGDDCREGLTAIVSVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEEHP EA+ ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENILNEGLSNWLEEHPGEARSVMGKVVLAAAAREAARKARETITRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+  KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|288562964|pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With
           Inhibitor
          Length = 203

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 122/204 (59%), Positives = 147/204 (72%), Gaps = 2/204 (0%)

Query: 20  GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDN 79
           GLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I VT++ D S +V D+
Sbjct: 1   GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 60

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I
Sbjct: 61  GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVI 120

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRE 198
           +REG I+   + +G+   PL VTG     TGT V F PS + F+   +F Y+ L  RLRE
Sbjct: 121 QREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVTEFEYEILAKRLRE 179

Query: 199 LSFLNSSVQISLIDKRSPEPREIT 222
           LSFLNS V I L DKR  +     
Sbjct: 180 LSFLNSGVSIRLRDKRDGKEDHFH 203


>gi|38224496|gb|AAR14142.1| DNA gyrase B subunit [Fusobacterium varium]
          Length = 399

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 179/400 (44%), Positives = 259/400 (64%), Gaps = 2/400 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS W  + +K +G I+   +  G+ +  +   G    + G
Sbjct: 2   NDNYKVSGGLHGVGVSVVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTT-EHG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F    +IF    ++Y+TL++RL+EL++LN  ++I L D R    ++    ++GGI 
Sbjct: 61  TTVRFKADHEIFETLIYDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKKEEFKFEGGIV 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+  +    + L+  PI + G  DN+++D+A  +     E +  F NNI   +G +H+S
Sbjct: 121 DFLKEITEETEKLIPEPIYMTGEVDNVAVDIAFLYTVNQSEIIYSFVNNINTHEGRSHVS 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR I    +     K+    + G+D REG T+++S+K+P P+F  QTK KL +S
Sbjct: 181 GFRTALTRVINDVGKAQGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV  +V + V   L   LE++P + K   ++ +++   R+AA++AR+L  RK VL++ SL
Sbjct: 241 EVTGIVSTLVGTNLKIVLEDNPNDHKNNNRENMNSKKAREAAQKARELVLRKSVLEVGSL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS ++P + E+++VEGDSAGGSAKQGR R +QAILPLRGKILNVE+A   K L 
Sbjct: 301 PGKLADCSSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLE 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           + E+  +ITA GT IG DSF+I KLRY KII+MTDADVDG
Sbjct: 361 NNEVRAMITAFGTSIG-DSFNIEKLRYGKIILMTDADVDG 399


>gi|300068750|dbj|BAJ10557.1| DNA gyrase subunit B [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius]
          Length = 389

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 198/393 (50%), Positives = 276/393 (70%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVG SVVNALS+W+++ + R+G+IY   +  G     L + G   + TG
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSTWMRVEVHRDGHIYVQEYERGTPLYDLKIIG-TTDKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y GG+
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L + PI +   +D++++++A+++NDGY   V  F NNI   +GGTH 
Sbjct: 119 AEFVRWLNQSKDVLFEDPIYVSAVKDDVAVEIALQYNDGYAATVYSFANNINTAEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE+   + +  +LEE+P  A+ IV K + A+  R+AARRAR+LTR K  +D+ S
Sbjct: 239 SEVRGIVETLFAERMQTFLEENPSVARKIVDKCILAARAREAARRARELTRSK-KMDVTS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +++EI  +ITA GTGIG D FDI+K RYHKI+I
Sbjct: 358 ANEEIRAIITACGTGIG-DDFDISKARYHKIVI 389


>gi|90903298|gb|ABE02214.1| gyrase B [Campylobacter jejuni]
          Length = 387

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 188/393 (47%), Positives = 263/393 (66%), Gaps = 6/393 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F + +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V G +   
Sbjct: 1   FGKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-K 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +    +  ++GG
Sbjct: 60  TGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI   DGGTH
Sbjct: 118 ISQFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTH 175

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G R  LTR I++    +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL 
Sbjct: 176 EAGFRMGLTRVISNLHRSNASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLG 235

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           S+ VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + 
Sbjct: 236 STYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVG 295

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+
Sbjct: 296 TLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKI 355

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           L S++I  +ITA G GIG+D FD++KLRYHKII
Sbjct: 356 LKSEQIQNMITAFGCGIGED-FDLSKLRYHKII 387


>gi|35210335|dbj|BAC92679.1| gyrase B subunit [Alicyclobacillus acidiphilus]
          Length = 388

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 199/391 (50%), Positives = 274/391 (70%), Gaps = 6/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            YKVSGGLHGVG SVVNALS WL++ + R+G +YE  +  G+    L V G   + TGT 
Sbjct: 3   GYKVSGGLHGVGASVVNALSIWLRVEVHRDGQVYEQEYERGVPLYDLRVIG-TTDRTGTT 61

Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V+F P  +IF+    F+++TLQ RLREL+FLN+ + I L D+R  +   +   Y+GG+  
Sbjct: 62  VSFRPDPEIFTETTEFSFETLQGRLRELAFLNAGLNIILEDERDGKR--VDYRYEGGVSE 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L++ K  L   P+ + G +D++++++A+++NDGY   +  F NNI   +GGTH +G
Sbjct: 120 FVRFLNQSKDVLFPDPVFVSGVKDDVTVEIALQYNDGYSSTLYSFANNINTGEGGTHEAG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +SALTR I  Y  K+   K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +SE
Sbjct: 180 FKSALTRVINDYGRKNNLLKSNDGSLTGDDVREGLTAVISVKVPEPQFEGQTKTKLGNSE 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR +VES   + L  +LEE+P  A+ I+ K + A+  R+AA+RAR+LTR K  +D+ SLP
Sbjct: 240 VRGIVESLFGEHLQIFLEENPTVARRILDKSVMAARAREAAKRARELTRSK-KMDVTSLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL DC  +DP+ SEL+LVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+LS+
Sbjct: 299 GKLTDCVSKDPEMSELYLVEGDSAGGSAKGGRDPQTQAILPLRGKIINVEKARLDKILSN 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +EI  +ITA GTGIG D FDI K RYHKI+I
Sbjct: 359 EEIRAIITACGTGIG-DEFDITKARYHKIVI 388


>gi|328349719|emb|CBY89167.1| GyrB protein [Flavobacterium sp. R-38474]
          Length = 400

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 183/395 (46%), Positives = 256/395 (64%), Gaps = 6/395 (1%)

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           +MT++ AGGKF++ SYKVSGGLHGVGVS VNALS+ L+  + R+G +YE  +  G    P
Sbjct: 1   VMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSNHLRATVFRDGKVYEQEYEKGKAQYP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS-- 215
           +   G   +  GT VTF P   IF+   ++NYDT+  R+RELSFLN  + I+L DKR   
Sbjct: 61  VKQIGET-DKRGTMVTFKPDDTIFTQSTEYNYDTIAGRMRELSFLNKGITITLTDKRETD 119

Query: 216 --PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
              E          G++ FV +LD+ ++ ++   I +   +  I +++A+ +N  Y EN+
Sbjct: 120 EKGEFVSEIFHSDEGLKEFVRFLDKGREGIISHVISMDHEKGEIPVEVALIYNTSYSENI 179

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             + NNI   +GGTHL G R  LTR +  Y + S    K K  + GDD REG T+++S+K
Sbjct: 180 FSYVNNINTHEGGTHLQGFRMGLTRTLKKYADSSGLLDKLKFEITGDDFREGLTAIISVK 239

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL + EV S V   V++ L  +LEE+P +AK IV+KV+ A+  R AA+
Sbjct: 240 VQEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPNDAKTIVQKVILAAQARHAAK 299

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++ +RK VL    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPL
Sbjct: 300 KAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRNFQAILPL 359

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           RGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 360 RGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTE 394


>gi|116488841|gb|ABJ98771.1| DNA gyrase B [Ruegeria pomeroyi]
          Length = 382

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 233/382 (60%), Positives = 292/382 (76%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS WL+LRI R G  +   F  G     L V G  G+ TGTEV 
Sbjct: 1   QVSGGLHGVGVSVVNALSDWLELRIWRHGKEHVARFERGDTVEHLRVVGECGDRTGTEVR 60

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL S+  FS  D+ ++TL+ RLREL+FLNS V+I LID+R  E  E  +FY+GG+  FV 
Sbjct: 61  FLASTTTFSNLDYVFETLEKRLRELAFLNSGVRIILIDERPAERIETELFYEGGVREFVK 120

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLDR K P+M +PI  +G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R 
Sbjct: 121 YLDRSKSPVMPAPIYFKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRG 180

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I +Y + S  +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR 
Sbjct: 181 ALTRTINNYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRP 240

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ VN+ L+ W EE+P  AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL
Sbjct: 241 AVENLVNEKLAEWFEENPNVAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKL 300

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DCSE+DP K+E+FLVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+ML SQEI
Sbjct: 301 KDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEI 360

Query: 475 GTLITALGTGIGQDSFDINKLR 496
           G L+ ALGTGIG+D F+I+KLR
Sbjct: 361 GNLVMALGTGIGRDEFNISKLR 382


>gi|190148816|gb|ACE63383.1| DNA gyrase B subunit [Thermobifida alba]
          Length = 404

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 190/406 (46%), Positives = 268/406 (66%), Gaps = 6/406 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ L++ I+++G ++   +        L + G   ++TGT++TF
Sbjct: 1   VSGGLHGVGVSVVNALSTRLEVEIRKDGYVWTQRYEMTHPVTDL-IKGEPTDETGTQITF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----EPREITMFYKGGIEA 231
                IF    +N++TL  RL+E++FLN  + I++ D+R       P   T  Y+GG+  
Sbjct: 60  WADDSIFETTTYNFETLSRRLQEMAFLNKGLSITIRDERPEFVGDSPVTQTYHYEGGLAD 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +++  K+P   + I  + S D I+ ++AM+WN  Y  +V  F N I   +GGTH  G
Sbjct: 120 FVRHINATKEPAHSTIIAFEDSGDGIAAEIAMQWNQSYTSSVHTFANTINTAEGGTHEEG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  +  Y       +    ++ GDD REG T+++S+K+ DP+F  QTK KL ++E
Sbjct: 180 FRAALTSIVNRYARDQKLLRDKDDNLTGDDVREGLTAIVSVKLTDPQFEGQTKTKLGNTE 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            +S ++   ++ L  W + +P EAK IV K   A+  R AAR+AR+LTRRK +L+  SLP
Sbjct: 240 AKSFIQKVCHEHLRDWFDRNPGEAKDIVTKASQAARARIAARQARELTRRKTLLESTSLP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC   DP++ E+++VEGDSAGGSAK GR    QAILP+RGKILNVE+AR D++L +
Sbjct: 300 GKLADCQSTDPERCEVYIVEGDSAGGSAKGGRDPHYQAILPIRGKILNVEKARIDRILKN 359

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
            E+  +ITALGTG+  D FDI KLRYHKII+MTDADVDG+HIRTLL
Sbjct: 360 NEVQAIITALGTGV-HDDFDIEKLRYHKIILMTDADVDGSHIRTLL 404


>gi|28277299|gb|AAH44276.1| LOC398512 protein [Xenopus laevis]
          Length = 1132

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 149/743 (20%), Positives = 273/743 (36%), Gaps = 73/743 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 32  YQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDEGLNCRDITFVPGLYKIFDEILVNAA 91

Query: 54  DESLEGYA-DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I +T++ D  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 92  DNKQRDPTMSCIKITIDPDNNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 151

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   I++ ++ N + + P         + 
Sbjct: 152 DQKKVTGGRNGYGAKLCNIFSNKFTVETACREYKKIFKQTWTNNMSNAPDPKIKPFEGED 211

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++  +  V++ L  KR            
Sbjct: 212 FTCITFQPDLSKFKMQILDKDIVALMSRRAYDVAGSSKGVKVFLNGKR---------LPV 262

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G   +V    + K     +P ++   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 263 SGFRTYVEMYLKDKLDETGNPFKVMHEQVNDRWEVCLTMSEKGFQQI-SFVNSIATTKGG 321

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   SV     +      ++  + +P F SQTKE 
Sbjct: 322 RHVDYVADQIVTKLIDVVKKKN---KGGISVKPFQVKNHMWVFVNALIENPTFDSQTKEN 378

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                     + I+  V   +         +    +   + 
Sbjct: 379 M-TLQSKSFGSKCTLSEKFIKGATSCGIVESILNWVKFKAQ---TQLNKKCSAVKHTKIK 434

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   R+  +  L L EGDSA      G    GR R    + PLRGK+LNV 
Sbjct: 435 GIPKLDDANDAGSRNSLECTLILTEGDSAKTLAVSGLGVVGRDR--YGVFPLRGKLLNVR 492

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 493 EASHKQIMENAEINNIIKIVGLQYKKNYDDNESLRTLRYGKIMIMTDQDQDGSHIKGLLI 552

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
            F     PSL+ + FL     P+  +T+ K           E++      +         
Sbjct: 553 NFIHHNWPSLLKHCFLEEFITPIIKVTKNKQELSFYSIPEFEEWK-----NNTESHKTWK 607

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                        +       + +   P      I+ A I+  F+ +   +    L    
Sbjct: 608 IKYYKGLGTSTSKEAKEYFADMERHRIPFKYAGPIDDAAITMAFSRKKVDDRKEWLT--- 664

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
               NF+ ++ E+  HG       L  +  + +     +    I    S  +R   + ++
Sbjct: 665 ----NFMQDRRERRLHGLPEEY--LYGKSTKYLTFNDFINKELILFSNSDNERSIPSLVD 718

Query: 699 ENYLTILSLI----CNGDKIKIT 717
                   ++       DK ++ 
Sbjct: 719 GLKPGQRKVLFTCFKRNDKREVK 741


>gi|51571583|emb|CAH18958.1| gyrase B [Corallococcus coralloides]
          Length = 390

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 210/393 (53%), Positives = 279/393 (70%), Gaps = 3/393 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN L+ W K+RI+R G ++E  +  G+ D+P    G   +  GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLAEWFKVRIQRNGKVFEQGYARGVPDSPPREVG-TTDKRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P   I    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  MIHFKPDPTIMETADFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGIAS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K  L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKTALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +SALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKSALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARIAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KMLSS
Sbjct: 298 GKLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            EI TLITALGTGIG + +D  K RYH+II+MT
Sbjct: 358 AEIVTLITALGTGIGAEDYDPEKARYHRIILMT 390


>gi|199599921|gb|ACH91038.1| DNA gyrase subunit B [Paenibacillus durus]
          Length = 404

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 206/392 (52%), Positives = 280/392 (71%), Gaps = 5/392 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS  + + +KREG+ Y+  +  G+    +   G   ++T T+ TFLP  
Sbjct: 17  LHGVGISVVNALSEKVIVTVKREGHAYQQEYRRGVPQYDIRTIGDT-DETSTKTTFLPDP 75

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    ++Y+TL  R+REL+FLN  ++ISL D+R+         Y GGI  +V +L+ 
Sbjct: 76  EIFTETTVYDYNTLLTRIRELAFLNKGIEISLTDERTGASST--FKYDGGIIEYVKFLNE 133

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ L + PI + GSRD I I++A+++ND Y EN+  F NNI   +GGTH SG +SALTR
Sbjct: 134 KKEVLHEEPIYVGGSRDMIQIEVALQYNDSYTENIYSFANNIHTHEGGTHESGFKSALTR 193

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  KS   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +SEVR +VES
Sbjct: 194 IINDYARKSGIIKDNSSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVES 253

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + L  +LEE+P  ++ +++K L AS  R+AAR+AR+LTRRK  L+++SLPGKLADCS
Sbjct: 254 LFGEKLQEFLEENPAISRRVLEKSLQASRAREAARKARELTRRKSALEVSSLPGKLADCS 313

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D   SELF+VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++LS+ EI  +I
Sbjct: 314 SKDASISELFIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAII 373

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           TALGTGIG D FD++K RYHK++IMTDADVDG
Sbjct: 374 TALGTGIG-DDFDLSKARYHKVVIMTDADVDG 404


>gi|35210327|dbj|BAC92675.1| gyrase B subunit [Alicyclobacillus acidocaldarius]
 gi|300068738|dbj|BAJ10553.1| DNA gyrase subunit B [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius]
 gi|300068741|dbj|BAJ10554.1| DNA gyrase subunit B [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius]
          Length = 389

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 199/393 (50%), Positives = 274/393 (69%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVG SVVNALS W+++ + R+G IY   +  G     L V G   + TG
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y GG+
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L   PI +   +D++++++A+++NDGY   V  F NNI   +GGTH 
Sbjct: 119 AEFVRWLNQSKDVLFDDPIYVSAVKDDVAVEIALQYNDGYAATVYSFANNINTAEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE+   + +  +LEE+P  A+ IV+K + A+  R+AARRAR+LTR K  +D+ S
Sbjct: 239 SEVRGIVETLFAERMQMFLEENPSIARKIVEKCILAARAREAARRARELTRSK-KMDVTS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +++EI  +ITA GTGIG D FDI+K RYHKI+I
Sbjct: 358 ANEEIRAIITACGTGIG-DDFDISKARYHKIVI 389


>gi|19909685|dbj|BAB87038.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 303

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 153/306 (50%), Positives = 205/306 (66%), Gaps = 19/306 (6%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISA 95
           GLHH+++EVLDN+IDE+L GY + I VT++ D S +V+DNGRGIPTD+      E   SA
Sbjct: 1   GLHHLVFEVLDNSIDEALAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSA 60

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AE++MT LHAGGKF+Q SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  GI 
Sbjct: 61  AEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGIA 120

Query: 156 ------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
                        +P++VTG    + GTEV F+    IF   +++YD L  R+RELSFLN
Sbjct: 121 QDRVLEKVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLN 179

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           + V+I L D RS +       + GG++ FV Y+++ K  L  +     G +D + +++AM
Sbjct: 180 NGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAM 237

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD R
Sbjct: 238 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 297

Query: 324 EGFTSV 329
           EG + V
Sbjct: 298 EGLSCV 303


>gi|22762029|dbj|BAC11801.1| gyrase B [Campylobacter jejuni]
          Length = 386

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 190/392 (48%), Positives = 266/392 (67%), Gaps = 6/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           + +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   V G +   TG
Sbjct: 1   KDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F P   IF V +F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI 
Sbjct: 60  TTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGIS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV+  D +KK  +   I      +++++++A+ +ND Y EN+L F NNI   DGGTH +
Sbjct: 118 QFVT--DLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEA 175

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LTR I++Y+E +  +++    + GDD REG  +++S+K+P+P+F  QTK KL S+
Sbjct: 176 GFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGST 235

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            VR +V     + L+ + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +L
Sbjct: 236 YVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTL 295

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L 
Sbjct: 296 PGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILK 355

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++I  +ITA G GIG+D FD++KLRYHKIII
Sbjct: 356 SEQIQNMITAFGCGIGED-FDLSKLRYHKIII 386


>gi|332800577|emb|CBY89778.1| GyrB protein [Flavobacterium limicola]
          Length = 401

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 181/395 (45%), Positives = 256/395 (64%), Gaps = 7/395 (1%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILD 156
           V+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G   
Sbjct: 1   VVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKAL 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            P+   G      GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR 
Sbjct: 61  YPVKQIGETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE 119

Query: 216 PEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
            +              G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y E
Sbjct: 120 KDKDGNFVSEVFHSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEIPVEVALIYNTSYTE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S
Sbjct: 180 NIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R A
Sbjct: 240 VKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAIL
Sbjct: 300 AKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           PLRGKILNVE+A   K+  ++EI  + TALG  IG
Sbjct: 360 PLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIG 394


>gi|126035284|gb|ABN72395.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 382

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 229/385 (59%), Positives = 296/385 (76%), Gaps = 4/385 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           +GGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F 
Sbjct: 1   TGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFW 59

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV Y
Sbjct: 60  PSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 118 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLA
Sbjct: 238 VEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKI 500
           TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 TLITALGCGIGRDEYNPDKLRYHSI 382


>gi|157073805|dbj|BAF79901.1| gyrase B [Methylobacterium rhodinum]
          Length = 399

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 249/399 (62%), Positives = 305/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS  LKLRI R G  + M F +G    PL V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTF PS D F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+E
Sbjct: 61  TEVTFTPSQDTFTMVEFDYPTLEKRLRELAFLNSGVRIVLTDARHAEHKREELCYEGGVE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            FV YLDR +KP+  M  P+ + G RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 EFVRYLDRSRKPVDGMAKPVTVLGERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQIT Y E S  +K++K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQITGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|297614604|gb|ADI48604.1| DNA gyrase subunit B [Shewanella chilikensis]
          Length = 382

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 222/385 (57%), Positives = 297/385 (77%), Gaps = 4/385 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G    P+   G A   TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEAT-KTGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS + F+  +F+Y+ L  R+RELSFLNS V I L+D+R  +       Y+GGI+AF
Sbjct: 60  IRFWPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLVDERDNKD--ELFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V YL+R+K P+ +        R++ I++++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G
Sbjct: 118 VEYLNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAALTRNLNNYMEKEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LP
Sbjct: 238 VKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLR 496
           QE+ TLITALG GIG+D +D +K R
Sbjct: 358 QEVATLITALGCGIGRDEYDPDKTR 382


>gi|308153070|dbj|BAJ22124.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 385

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 191/387 (49%), Positives = 272/387 (70%), Gaps = 3/387 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+  + L + G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEIIGETDH-TG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF+    ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFTETTVYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  L  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSAALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLR 496
           S+ E+ ++ITALGTGIG+D F++ K R
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKAR 385


>gi|126035344|gb|ABN72425.1| gyrase B subunit [Shigella sonnei]
          Length = 383

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 231/386 (59%), Positives = 296/386 (76%), Gaps = 4/386 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWP 59

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL
Sbjct: 60  SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+
Sbjct: 118 NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 178 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLAD
Sbjct: 238 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKIII 502
           LITALG GIG+D ++ +KLRYH III
Sbjct: 358 LITALGCGIGRDEYNPDKLRYHSIII 383


>gi|305861866|gb|ADM72891.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947804|gb|ADN96142.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947809|gb|ADN96144.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947818|gb|ADN96148.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 386

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 230/389 (59%), Positives = 299/389 (76%), Gaps = 4/389 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F 
Sbjct: 1   SGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS D FS  +F+++ L  R+RELSFLNS V I LID+R  +       Y+GGI AFV YL
Sbjct: 60  PSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLIDERDNKN--EFFKYEGGISAFVDYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSA
Sbjct: 118 NRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY+E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLA
Sbjct: 238 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMT 504
           TLITALG GIG+D ++ +K RYH IIIMT
Sbjct: 358 TLITALGCGIGRDEYNPDKTRYHNIIIMT 386


>gi|198042698|gb|ACH81174.1| GyrB [Pseudoalteromonas sp. UST050418-027]
          Length = 385

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 229/387 (59%), Positives = 300/387 (77%), Gaps = 6/387 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL V G + + TGTE+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGDS-DTTGTEL 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV
Sbjct: 60  RFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIQAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            Y++R+K P+ +        R    IS++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 EYINRNKTPIHKGVFHFTHERVEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            RSALTR + +++EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 FRSALTRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VE  + +  + +L E+P++AKI+V K++DAS  R+AAR+AR++TRRKG +D+A 
Sbjct: 239 SEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLR 496
           SSQE+ TLITALG GIG+D ++  KLR
Sbjct: 359 SSQEVATLITALGCGIGRDEYNPEKLR 385


>gi|126035348|gb|ABN72427.1| gyrase B subunit [Vibrio cholerae]
          Length = 380

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 225/382 (58%), Positives = 295/382 (77%), Gaps = 3/382 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+
Sbjct: 60  SAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLN 118

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R AL
Sbjct: 119 RNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 179 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 238

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES +N+ L+ +L E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 239 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 298

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 299 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 358

Query: 477 LITALGTGIGQDSFDINKLRYH 498
           LITALG GIG+D ++ +KLRYH
Sbjct: 359 LITALGCGIGRDEYNPDKLRYH 380


>gi|302746266|gb|ADL62723.1| GyrB [Morganella morganii subsp. sibonii]
          Length = 388

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 231/390 (59%), Positives = 296/390 (75%), Gaps = 4/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVN LS  L+L I+R+G ++E  + +G   + L + G   + TGT 
Sbjct: 2   SYKVSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTIVGET-DKTGTR 60

Query: 173 VTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS D F    +F YD L  RLRELSFLNS V I L+DKR  +       Y+GGI+A
Sbjct: 61  VRFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLVDKRDGKE--DHFHYEGGIKA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL R K  +  +       +D+I ++++M+WND + ENV CFTNNIPQ+DGG HL+G
Sbjct: 119 FVEYLSRAKTSIHNNVFYFSTEKDDIGVEVSMQWNDSFQENVYCFTNNIPQRDGGAHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + SY+EK   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V++ VE+ +N+ LS +L+E+P + KIIV K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 239 VKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+S
Sbjct: 299 GKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLAS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKII 501
           QE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 359 QEVATLITALGCGIGRDEYNPDKLRYHSII 388


>gi|300068747|dbj|BAJ10556.1| DNA gyrase subunit B [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius]
          Length = 389

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 198/393 (50%), Positives = 274/393 (69%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVG SVVNALS W+++ + R+G IY   +  G     L V G   + TG
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y+GG+
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDEREGGKRAV-FKYEGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L   PI +   +D++++++A+++NDGY   V  F NNI   +GGTH 
Sbjct: 119 AEFVRWLNQSKDVLFDDPIYVSAVKDDVAVEIALQYNDGYAATVYSFANNINTAEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE+   + +  +LEE+P  A+ IV+K + A+  R+AARRAR+LTR K  +D+ S
Sbjct: 239 SEVRGIVETLFAERMQMFLEENPSIARKIVEKCILAARAREAARRARELTRSK-KMDVTS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DC  +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLTDCGSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +++EI  +ITA GTGIG D FDI+K RYHKI+I
Sbjct: 358 ANEEIRAIITACGTGIG-DDFDISKARYHKIVI 389


>gi|332800603|emb|CBY89791.1| GyrB protein [Flavobacterium reichenbachii]
          Length = 400

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 182/394 (46%), Positives = 256/394 (64%), Gaps = 6/394 (1%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           V+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS  +K  + R+G IYE  +  G    
Sbjct: 1   VVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSIHMKSTVFRDGKIYEQEYERGKSLY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS- 215
           P+   G   +  GT  TF P   IF+    F+YDTL  R+RELSFLN  + I+  DKR  
Sbjct: 61  PVKQIGET-DKRGTRQTFYPDDTIFTQTTEFSYDTLSARMRELSFLNKGITITFTDKREV 119

Query: 216 ---PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               E R        G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN
Sbjct: 120 DEKGEFRSEVFHSTEGLKEYIRYLDGNREPIVSHVISMDHDKGEIPVEVALIYNTSYTEN 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  + NNI   +GGTHL G RS LTR +  Y + S    K K  + GDD REG T+++S+
Sbjct: 180 IFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGLLDKLKFEIAGDDFREGLTAIISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +A++I++KV+ A+  R AA
Sbjct: 240 KVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPNDARLIIQKVILAAQARHAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           ++AR++ +RK V+    LPGKL+DCSE+DP + E++LVEGDSAGG+AKQGR R  QAILP
Sbjct: 300 KKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGGTAKQGRDRNFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LRGKILNVE+A   K+  ++EI  + TALG  +G
Sbjct: 360 LRGKILNVEKAMHHKVFENEEIRNIFTALGVTVG 393


>gi|210142362|dbj|BAG80972.1| DNA gyrase subunit B [Paenibacillus macquariensis subsp. defensor]
          Length = 389

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 196/393 (49%), Positives = 279/393 (70%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVGVSVVNALS    + +K +G+IY+  +  G+    + V G + ++ G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSEKAVVTVKVKGHIYQQEYRRGVPQYDVRVIGES-DEHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T VTF P  +IF+    ++Y TL  R+RE++FLN  + ++L D+R+     +   Y+GGI
Sbjct: 60  TTVTFHPDPEIFTETTVYDYGTLLTRVREIAFLNKGIALTLNDERADSS--VRFMYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + +V +L+  K+ L + PI ++GSRD + +++A+++ND Y EN+  F NNI   +GGTH 
Sbjct: 118 KEYVKFLNEKKEALHEEPIYVEGSRDMMQVEVALQYNDSYTENIYSFCNNINTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K    ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 SGFKSALTRIINDYARKTGVIKDSNSNLSGDDVREGLTAIISVKIPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES  ++ L  +LEE+P  ++ I++K L AS  R+AAR+AR+LTRRK  L++++
Sbjct: 238 SEVRGIVESLFSEKLQEFLEENPAVSRRILEKGLQASRAREAARKARELTRRKSALEVSA 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QA LPLRGKILNVE+AR D++L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQASLPLRGKILNVEKARLDRIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITA+GTGIG+  FD++K RYHK+II
Sbjct: 358 SNAEIRNMITAMGTGIGEG-FDLSKARYHKVII 389


>gi|198042682|gb|ACH81166.1| GyrB [Pseudoalteromonas sp. UST020129-030]
          Length = 372

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 222/374 (59%), Positives = 288/374 (77%), Gaps = 6/374 (1%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+REG ++E ++  G+ + PL +
Sbjct: 1   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPNAPLAI 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A + TGTE+ F PS + F+  DF+YD L  RLRELSFLNS V I L D+R  E +  
Sbjct: 61  IGDA-DTTGTELRFWPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-EENKTD 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNN 279
              Y GGI+AFV YL+R+K P+ +        R+   IS++++M+WNDG+ EN+ CFTNN
Sbjct: 119 HFKYDGGIQAFVEYLNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDGFQENIYCFTNN 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDP 337
           IPQ+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP
Sbjct: 179 IPQRDGGTHLAGFRSALTRTLKNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDP 238

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  + +  S +L E+P++AKI+V K++DA+  R+AAR+AR+
Sbjct: 239 KFSSQTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAARAREAARKARE 298

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG +D+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 299 MTRRKGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 358

Query: 458 LNVERARFDKMLSS 471
           LNVE+ARFDKMLSS
Sbjct: 359 LNVEKARFDKMLSS 372


>gi|151415017|gb|ABS11698.1| DNA gyrase subunit B [Pseudomonas oleovorans subsp. lubricantis]
          Length = 390

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 224/390 (57%), Positives = 299/390 (76%), Gaps = 4/390 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ 
Sbjct: 4   QVSGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIH 62

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS + F+   F++D L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV 
Sbjct: 63  FKPSEETFANIHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVE 120

Query: 235 YLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           YL+ +K  + Q     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G R
Sbjct: 121 YLNTNKTVVNQVFHFSVQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFR 180

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 181 SALTRHLNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 240

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGK
Sbjct: 241 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 300

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+SSQE
Sbjct: 301 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVERARFDRMISSQE 360

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           +GTLITALG GIG+D ++I+KLRYH IIIM
Sbjct: 361 VGTLITALGCGIGRDEYNIDKLRYHNIIIM 390


>gi|90903296|gb|ABE02213.1| gyrase B [Pseudorhodobacter incheonensis]
          Length = 310

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 171/310 (55%), Positives = 217/310 (70%), Gaps = 11/310 (3%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           HM+YEV+DN IDE+L G+A+ + V ++ D S +V DNGRGIP D+H+EEG+SAAEVIMT+
Sbjct: 1   HMVYEVVDNGIDEALAGHANYVLVKIHADSSVSVRDNGRGIPVDMHQEEGVSAAEVIMTQ 60

Query: 103 LHAGGKFNQ-----KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           LHAGGKFN       +YKVSGGLHGVGVSVVNALS WL+LR+ R   +Y   F  G    
Sbjct: 61  LHAGGKFNNTDEGGNAYKVSGGLHGVGVSVVNALSDWLELRVWRNDKVYYARFEKGECTV 120

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDI------FSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
            +   G A  + GTEV F+ SS +      FS  DF++ TL+ RLREL+FLNS V+I + 
Sbjct: 121 HVREEGDAPGEKGTEVRFMASSKLTDPEGTFSNLDFSFKTLETRLRELAFLNSGVRIIIE 180

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+R  E  +  ++Y GG++ FV YLDR K  +M  PI + G    I +++AM WND YHE
Sbjct: 181 DERPAEALKTELYYDGGVKEFVKYLDRSKTAVMPEPIYMLGEVRGIGVEVAMWWNDSYHE 240

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NVL FTNNIPQ+DGGTHL+GLR ALTR I SY + S  +KK+K    GDD REG T VLS
Sbjct: 241 NVLPFTNNIPQRDGGTHLAGLRGALTRTINSYAQSSGIAKKEKVDFTGDDAREGLTCVLS 300

Query: 332 IKMPDPRFSS 341
           +K+PDP+FSS
Sbjct: 301 VKVPDPKFSS 310


>gi|35210331|dbj|BAC92677.1| gyrase B subunit [Alicyclobacillus sp. DSM 11984]
          Length = 389

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 197/393 (50%), Positives = 273/393 (69%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVG SVVNALS W+++ + R+G+IY   +  G     L V G   + TG
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWMRVEVHRDGHIYVQEYERGTPLYDLKVIG-TTDQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y GG+
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLANRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L   PI +   +D++++++A+++NDG+   V  F NNI   +GGTH 
Sbjct: 119 AEFVHWLNQSKDVLFDDPIYVSALKDDVAVEIALQYNDGFSATVYSFANNINTAEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRFGMLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE+   + +  +LEE+P  A+ IV K + A+  R+AARRAR+LTR K  +D+ S
Sbjct: 239 SEVRGIVETLFAERMQIFLEENPSVARKIVDKCILAARAREAARRARELTRSK-KMDVTS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DC  +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLTDCGSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +++EI  +ITA GTGIG D FDI+K RYHKI+I
Sbjct: 358 ANEEIRAIITACGTGIG-DDFDISKARYHKIVI 389


>gi|82940552|emb|CAJ44284.1| gyrase B protein [Vibrio tapetis]
          Length = 384

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 229/386 (59%), Positives = 299/386 (77%), Gaps = 3/386 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R+G+ ++ ++ +G  D PL VTG     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGVTGDTE-KT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + F PS + F+   F+Y+ L  RLRELSFLNS V I LID+R  E +     Y+GG 
Sbjct: 60  GTIIRFWPSEETFTNVHFHYEILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFCYEGGT 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV YL+ +K P++Q        R++ IS+++AM+WNDGY EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVDYLNTNKTPIIQKVFHFDYEREDGISVEVAMQWNDGYQENIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A
Sbjct: 239 SSEVKSAVESAMGEKLSEFLIENPSEAKIVCSKIIDAARARDAARKAREMTRRKGALDLA 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 299 GLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINK 494
           LSSQE+ TLITALG GIG+D ++ +K
Sbjct: 359 LSSQEVATLITALGCGIGRDEYNPDK 384


>gi|305861834|gb|ADM72875.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861836|gb|ADM72876.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861838|gb|ADM72877.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861840|gb|ADM72878.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861842|gb|ADM72879.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861844|gb|ADM72880.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861846|gb|ADM72881.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861848|gb|ADM72882.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861850|gb|ADM72883.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861852|gb|ADM72884.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861854|gb|ADM72885.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861856|gb|ADM72886.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861858|gb|ADM72887.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861860|gb|ADM72888.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861864|gb|ADM72890.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947786|gb|ADN96133.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947788|gb|ADN96134.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947790|gb|ADN96135.1| DNA gyrase B subunit [Shewanella baltica OS195]
 gi|307947792|gb|ADN96136.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947794|gb|ADN96137.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947796|gb|ADN96138.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947798|gb|ADN96139.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947800|gb|ADN96140.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947802|gb|ADN96141.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947812|gb|ADN96145.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947814|gb|ADN96146.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947816|gb|ADN96147.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 386

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 229/389 (58%), Positives = 299/389 (76%), Gaps = 4/389 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F 
Sbjct: 1   SGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS D FS  +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL
Sbjct: 60  PSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSA
Sbjct: 118 NRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY+E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLA
Sbjct: 238 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMT 504
           TLITALG GIG+D ++ +K RYH IIIMT
Sbjct: 358 TLITALGCGIGRDEYNPDKTRYHNIIIMT 386


>gi|18147161|dbj|BAB83061.1| DNA gyrase subunit B [Alcanivorax sp. Abu-1]
          Length = 386

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 230/388 (59%), Positives = 296/388 (76%), Gaps = 4/388 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +YKVSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G+  + +
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPAMPLEVVGNT-DSS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + F PS++ F+   F+YD L  RLRELSFLNS V+I L+D+R+ E       Y+GG+
Sbjct: 60  GTAIHFRPSAETFTNIKFHYDILAKRLRELSFLNSGVRIHLLDERNGEE--DVFEYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFVSYL+ +K PL Q          D I++++AM+WND Y EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVSYLNENKTPLNQVFHFQFDREEDGIAVEVAMQWNDSYQENLFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + SY+EK    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAALTRTLNSYMEKEGLLKKEKANPTGDDAREGLTAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + +    +L E+P EAK I  K++DA+  RDAAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKSAVEQTMGELFQDYLLENPQEAKAISSKIIDAARARDAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLR 496
           LSSQE+GTLITALG GIG+D +++ KLR
Sbjct: 358 LSSQEVGTLITALGCGIGRDEYNVEKLR 385


>gi|324331800|gb|ADY38686.1| DNA gyrase subunit B [Ignatzschineria indica]
          Length = 379

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 221/381 (58%), Positives = 287/381 (75%), Gaps = 3/381 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           +SGGLHGVGVSVVNALSS LKL I + G I+E  +  G  D PL   G   + TGT V F
Sbjct: 2   ISGGLHGVGVSVVNALSSKLKLTIYKHGKIHEQEYTLGDPDYPLREIGET-DKTGTTVYF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS ++F+  DF+YDTL  RLREL+FLNS ++I+L D+R  + RE    Y+GGI+A+V  
Sbjct: 61  KPSKEVFNNIDFDYDTLYKRLRELAFLNSGIRITLRDER--DDREDVFQYEGGIKAYVEL 118

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +++++  +          +DNIS++++++W DGY E+V C+TNNIPQ DGGTHL+G R+A
Sbjct: 119 INKNRNKIHPQIFYCNCQKDNISVEISLQWTDGYQESVFCYTNNIPQSDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR +  Y+++    KK K +  GDD REG T+++S+K+P P+FSSQTKEKLVSSEVR V
Sbjct: 179 MTRTLNRYMQEEGLLKKTKVATTGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPV 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+S + + L  +L E P +AK I  K++DA+M R+AAR+AR+ TRRK  LDIA LPGKLA
Sbjct: 239 VDSILAERLEEFLLERPEDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP KSELF+VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFD+M+ S EIG
Sbjct: 299 DCQEKDPAKSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMIGSAEIG 358

Query: 476 TLITALGTGIGQDSFDINKLR 496
           TLITALG GIG+D FD +KLR
Sbjct: 359 TLITALGCGIGRDEFDPDKLR 379


>gi|326775215|ref|ZP_08234480.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Streptomyces cf. griseus XylebKG-1]
 gi|326655548|gb|EGE40394.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Streptomyces cf. griseus XylebKG-1]
          Length = 643

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 144/389 (37%), Positives = 224/389 (57%), Gaps = 10/389 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + YDA++I +  GL+AV++ PSMY+G T G  G HH++ E++DNA+DE+  G+   I+V
Sbjct: 2   TTDYDAEAITLYSGLEAVRRNPSMYVGST-GADGAHHLVLELVDNAVDEAAAGHCGTISV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ DGSC+V+D+GRGIPTD H E G+ A E+++T LH+GGKF++ SY  S GLHGVG++
Sbjct: 61  ELHGDGSCSVTDDGRGIPTDQHPEAGVPACELVLTTLHSGGKFDRSSYATSAGLHGVGLA 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            VNALS WL+L + R+G  +  SF  G ++ PL   G +    GT V F P  +IFS   
Sbjct: 121 CVNALSKWLRLDVWRDGAHHSESFARGSVETPLKRVGDSA-RRGTRVWFRPDPEIFSSCV 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            + + L  RL ++++L+  +++ L+D R+   R  ++  + G+   +++  R  + +   
Sbjct: 180 LDAELLYARLLDIAYLHPGLRVDLVDHRTG--RNESLCERSGVRGLLAHRARDAEKVHAE 237

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+    + D   ID A++W +GY E V  + N I    GG+H+  LR AL   +      
Sbjct: 238 PVTFAWAGDGCVIDAAVQWTEGYAEQVFAYVNTIRTDLGGSHVDALRGALAGVVAD---- 293

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                     +   D  EG T+V++I++PD RF  QTK  L + E  + V   V +    
Sbjct: 294 --HLGPAADRMTVVDILEGLTAVIAIRIPDARFDGQTKRTLRNDEAGARVFDVVTEQARR 351

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            L   P  A+ I ++ +DAS  R AAR A
Sbjct: 352 ALAADPELARRIAERAVDASRARLAARLA 380


>gi|182434701|ref|YP_001822420.1| putative DNA gyrase B subunit [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463217|dbj|BAG17737.1| putative DNA gyrase B subunit [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 643

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 144/389 (37%), Positives = 224/389 (57%), Gaps = 10/389 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + YDA++I +  GL+AV++ PSMY+G T G  G HH++ E++DNA+DE+  G+   I+V
Sbjct: 2   TTDYDAEAITLYSGLEAVRRNPSMYVGST-GADGAHHLVLELVDNAVDEAAAGHCGTISV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ DGSC+V+D+GRGIPTD H E G+ A E+++T LH+GGKF++ SY  S GLHGVG++
Sbjct: 61  ELHGDGSCSVTDDGRGIPTDQHPEAGVPACELVLTTLHSGGKFDRSSYATSAGLHGVGLA 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            VNALS WL+L + R+G  +  SF  G ++ PL   G +    GT V F P  +IFS   
Sbjct: 121 CVNALSKWLRLDVWRDGAHHSESFARGSVETPLKRVGDSA-RRGTRVWFRPDPEIFSSCV 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            + + L  RL ++++L+  +++ L+D R+   R  ++  + G+   +++  R  + +   
Sbjct: 180 LDAELLYARLLDIAYLHPGLRVDLVDHRTG--RNESLCERSGVRGLLAHRARDAEKVHAE 237

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+    + D   ID A++W +GY E V  + N I    GG+H+  LR AL   +      
Sbjct: 238 PVTFAWAGDGCVIDAAVQWTEGYAEQVFAYVNTIRTDLGGSHVDALRGALAGVVAD---- 293

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                     +   D  EG T+V++I++PD RF  QTK  L + E  + V   V +    
Sbjct: 294 --HLGPAADRMTVVDILEGLTAVIAIRIPDARFDGQTKRTLRNDEAGARVFDVVTEQARR 351

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            L   P  A+ I ++ +DAS  R AAR A
Sbjct: 352 ALAADPELARRIAERAVDASRARLAARLA 380


>gi|145309487|dbj|BAF56641.1| DNA gyrase subunit B [Alicyclobacillus sacchari]
          Length = 389

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 200/391 (51%), Positives = 273/391 (69%), Gaps = 5/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            YKVSGGLHGVG SVVNALS WLK+ + R+G I+   +  G     L + G   N TGT 
Sbjct: 3   GYKVSGGLHGVGASVVNALSEWLKVEVHRDGKIHVQEYERGTPLYDLKIVGET-NRTGTT 61

Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           VTF P  +IF+    F+ +TLQ+RLREL+FLN+ ++I L D+R    R     Y+GG++ 
Sbjct: 62  VTFRPDPEIFTETTEFSAETLQNRLRELAFLNAGLEIVLEDEREGGKRFE-YHYEGGVKE 120

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+  K  L   PI +QG ++ +++++A+++NDGY   +  F NNI   +GGTH +G
Sbjct: 121 FVLYLNHSKDVLFPEPIYVQGVKEEVTVEIALQYNDGYSSTLYSFANNINTGEGGTHEAG 180

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +SALTR I  Y  ++   K    S+ GDD REG T+V+S+K+P+P+F  QTK KL +SE
Sbjct: 181 FKSALTRIINDYGRRNNLVKGSDGSLTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGNSE 240

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR +VES   + L  +LEE+P  A+ I++K + A+  R+AA+RAR+LTR K  +++ SLP
Sbjct: 241 VRGIVESLFGERLQIFLEENPSVARRILEKCVLAARAREAAKRARELTRNK-KMEVTSLP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL DC  +DP+ SEL+LVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+LS+
Sbjct: 300 GKLTDCVSKDPEVSELYLVEGDSAGGSAKGGRDPQTQAILPLRGKIINVEKARLDKVLSN 359

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +EI  +ITA GTGIG D FD++K RYHKI+I
Sbjct: 360 EEIRAIITACGTGIG-DEFDLSKARYHKIVI 389


>gi|302122524|gb|ADK92931.1| DNA gyrase subunit B [Geobacillus jurassicus]
          Length = 393

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 198/386 (51%), Positives = 268/386 (69%), Gaps = 4/386 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS WL++ + R+G I+   +  G     L V G   + TGT   F P  
Sbjct: 11  LHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDP 69

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    F+Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V +L+R
Sbjct: 70  EIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNE-YVYEGGIRSYVRHLNR 128

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG + ALTR
Sbjct: 129 TREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTR 188

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K +  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++
Sbjct: 189 IINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDA 248

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L EHP  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS
Sbjct: 249 VFSEQFETFLLEHPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCS 308

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +I
Sbjct: 309 SRDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAII 368

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMT 504
           TALGTGIG+D FDI+K RYHKIIIMT
Sbjct: 369 TALGTGIGED-FDISKARYHKIIIMT 393


>gi|207678292|gb|ACI25158.1| DNA gyrase B [Phaeobacter sp. M23-3.1]
          Length = 378

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 237/376 (63%), Positives = 293/376 (77%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS WL+LRI R+G  +   F  G     L V G  G+ TGTE
Sbjct: 2   SYKVSGGLHGVGVSVVNALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQTGTE 61

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V FL S+D FS  ++ ++TL+ RLREL+FLNS V+I LID+R  E  E+ +FY+GG++ F
Sbjct: 62  VRFLASTDTFSNLEYLFETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEF 121

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR K P+M++PI I G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G 
Sbjct: 122 VKYLDRSKSPVMEAPIYITGDRDEIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGF 181

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 182 RGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 241

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R VVES VN+ L+ W EE+P +AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L G
Sbjct: 242 RPVVESLVNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAG 301

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DCSE+DP K+E+FLVEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQ
Sbjct: 302 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQ 361

Query: 473 EIGTLITALGTGIGQD 488
           EIG L+ ALGTGIG+D
Sbjct: 362 EIGNLVMALGTGIGRD 377


>gi|84310492|gb|ABC55394.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 390

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 190/392 (48%), Positives = 276/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    + V G   + TG
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF+    ++YD L  R+REL+FL   V+I++ DKR  + ++    Y+GGI
Sbjct: 60  TITHFVPDPEIFTETTVYDYDLLSSRVRELAFLTKGVKITIEDKREEKEQKNEYCYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G++D I++++A+++ND Y  N+  F NNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGTKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K+   ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  ++ L  +L E+P  A+ ++ K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDALFSEALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPGISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVV 390


>gi|33590348|gb|AAQ22714.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 380

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 224/383 (58%), Positives = 294/383 (76%), Gaps = 4/383 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL + G     TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGETE-QTGTRVR 59

Query: 175 FLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GGI+AFV
Sbjct: 60  FWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R
Sbjct: 118 EFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 TAMTRTLNSYMDKEGSTKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 238 TAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 298 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 357

Query: 474 IGTLITALGTGIGQDSFDINKLR 496
           + TLITALG GIG+D ++ +KLR
Sbjct: 358 VATLITALGCGIGRDEYNPDKLR 380


>gi|50551479|ref|XP_503213.1| YALI0D23969p [Yarrowia lipolytica]
 gi|49649081|emb|CAG81413.1| YALI0D23969p [Yarrowia lipolytica]
          Length = 1537

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 150/688 (21%), Positives = 263/688 (38%), Gaps = 48/688 (6%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEVL 49
           ++  Q L  L+ + KRP  YIG  +                         GL+ +  E+L
Sbjct: 104 SEQYQKLTQLEHILKRPDTYIGSVEATASPMWVWNQTTSALEHKMVTIVPGLYKIFDEIL 163

Query: 50  DNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +     D + VT++ D    +V +NG+GIP ++H +E I   E+I   L    
Sbjct: 164 VNAADNKIRDPKMDSLEVTIDADKNEISVMNNGKGIPVEIHDKEKIYIPELIFGNLLTSS 223

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGS- 164
            +N    KV GG +G G  + N  S+  KL    ++ G IY  ++ N +           
Sbjct: 224 NYNDNEKKVVGGRNGFGAKLCNIFSTEFKLETADQKNGKIYTQTWSNNMSKVDKPKIKEL 283

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLIDKRSPEPREI 221
                 T+VTF P   +F++ + + DT+     R+ +++     V++ L   R       
Sbjct: 284 KTKKEYTKVTFKPDLKLFNMTELDADTVGVLMRRVYDIAGTTHGVKVKLNGTRLALKDFK 343

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                     ++  L   +   +    +I     N   ++A   +DG ++NV  F N+I 
Sbjct: 344 AYVDL-----YLKSLVADEDNEVVQKSKIVHEIVNDRWEVAFAVSDGTYQNV-SFVNSIA 397

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   L  ++T+  +K          V     +      ++  + +P F+S
Sbjct: 398 TTSGGTHVNYIADQLVAKLTATAKKK----LKDAQVKPAQLKANMFIFINCLIENPAFTS 453

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE++ +       +  ++D     +  +    + ++      +   DAA +  D + +
Sbjct: 454 QTKEQMTTKVSAFGSKCELSDKFIKQVTNNTDIMERVLSIAGRNA---DAALKKTDGSSK 510

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
           K  +              +   +  L L EGDSA   A  G S   RE     PLRGK+L
Sbjct: 511 KKRITTLVKLEDAQLAGTKRGHECTLILTEGDSAMTMANAGLSVIGRERYGAFPLRGKML 570

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A  D+++ + EI  +   +G    +       LRY  ++IMTD D DG+HI+ L++
Sbjct: 571 NVREASTDQIMKNAEIQAIKEIIGLQHKKHYTSCKDLRYGHLMIMTDQDHDGSHIKGLII 630

Query: 519 TFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            F     P L+   GFL     P+  +   +  + VK                E +    
Sbjct: 631 NFLETMFPGLLQIPGFLLEFITPIVKVMVMRGKKVVKTIPFYNMPEYEAWRDFEGQQCTW 690

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +             D       L +     H  T  ++  I   F+ +   +       K
Sbjct: 691 TSKYFKGLGTTPTADATEYFKDLDRHMKQFHAVTAEDRPFIELAFSKKKADDR-KEWLRK 749

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVK 665
                +   + +       IN   IL  
Sbjct: 750 YKPGTHLDPKLTHIPVSDFINKELILFS 777


>gi|328349707|emb|CBY89220.1| GyrB protein [Flavobacterium sp. R-36233]
          Length = 401

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 179/395 (45%), Positives = 254/395 (64%), Gaps = 7/395 (1%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNP 158
           MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS  L+  +   +G +YE  +  G    P
Sbjct: 3   MTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSSDGKVYEQEYERGKALYP 62

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           +   G      GT VTF P   IF+   +F YDTL  R+RELSFLN  + I+  DKR  +
Sbjct: 63  VKQIGETT-KRGTIVTFYPDPIIFTQTVEFAYDTLSARMRELSFLNKGITITFTDKREVD 121

Query: 218 PR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
                         G++ +V YLD +++P++   I +   +  + +++A+ +N  Y EN+
Sbjct: 122 KDGNFVSEIFHSDEGLKEYVRYLDANREPIISHVISMNSEKGEVPVEVALIYNTSYTENI 181

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K
Sbjct: 182 FAYVNNINTHEGGTHLQGFRTGLTRALKKYADSSGMLDKLKFEIAGDDFREGLTAIISVK 241

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL + EV + V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA+
Sbjct: 242 VSEPQFEGQTKTKLGNREVVAPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAK 301

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPL
Sbjct: 302 KAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEVYLVEGDSAGGTAKQGRDRAFQAILPL 361

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           RGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 362 RGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTE 396


>gi|126035250|gb|ABN72378.1| gyrase B subunit [Enterobacter cloacae]
 gi|126035252|gb|ABN72379.1| gyrase B subunit [Enterobacter cloacae]
          Length = 383

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 233/385 (60%), Positives = 298/385 (77%), Gaps = 4/385 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ D PL VTG   + TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTGTMVR 59

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV
Sbjct: 60  FWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 118 EYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 238 SAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 298 LADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 357

Query: 474 IGTLITALGTGIGQDSFDINKLRYH 498
           + TLITALG GIG+D ++ +KLRYH
Sbjct: 358 VATLITALGCGIGRDEYNPDKLRYH 382


>gi|19909591|dbj|BAB86991.1| DNA gyrase subunit B [Brevundimonas variabilis]
          Length = 398

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 255/398 (64%), Positives = 310/398 (77%), Gaps = 6/398 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-- 168
           Q SYKVSGGLHGVGVSVVNALS +L+L+I R G  +EM F  G    PL VTG A     
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDYLELKIYRNGKQHEMRFERGDTVTPLRVTGDAPMREN 60

Query: 169 ----TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               +GT+VTF PS   F+  DF+  TL+HRLREL+FLNS V I L D R  E  E  + 
Sbjct: 61  GKVLSGTQVTFFPSITTFAHIDFDLKTLEHRLRELAFLNSGVVIKLQDHRGAEKFEEILH 120

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GG+EAFV +LD+ K P+++  I I+G +DNI IDLA+ WND YHE +LCFTNNIPQ+D
Sbjct: 121 YEGGVEAFVRHLDKSKSPILKDVIVIRGKKDNIEIDLALWWNDSYHETMLCFTNNIPQRD 180

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLS  R++LTR ++SY+E S   KK+K +  G+D REG T VLS+K+PDP+FSSQTK
Sbjct: 181 GGTHLSAFRTSLTRVMSSYMESSGALKKEKVAPSGEDAREGLTCVLSVKVPDPKFSSQTK 240

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEVR  VE    +GLS W EEHP+EAK++V K+++A+  R+AAR+ARDLTRRK  
Sbjct: 241 DKLVSSEVRPAVEGLCTEGLSQWFEEHPIEAKLVVAKIIEAASAREAARKARDLTRRKSA 300

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LDI+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERAR
Sbjct: 301 LDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERAR 360

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           FD+MLSS+ IGTLI ALGTGIG+D F+ +KLRYHKII+
Sbjct: 361 FDRMLSSELIGTLILALGTGIGRDDFNADKLRYHKIIL 398


>gi|307939290|gb|ADN95836.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 424

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 199/425 (46%), Positives = 281/425 (66%), Gaps = 21/425 (4%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT   AGGKF++ SYKVSGGLHGVGVS VNALS+ LK+ ++R G+ YE  +  GI    +
Sbjct: 1   MTVXXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---- 215
              G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R     
Sbjct: 61  KEVGLSE-EHGTEVQFLPDASIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLEG 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
              R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV 
Sbjct: 120 GVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVY 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+
Sbjct: 180 SYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+
Sbjct: 240 QEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLR
Sbjct: 300 AKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLRYHK 499
           GKILNVE+A+  ++L ++EI  +ITALG                G      + +KLRYHK
Sbjct: 360 GKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSKLRYHK 419

Query: 500 IIIMT 504
           +IIMT
Sbjct: 420 VIIMT 424


>gi|189397228|gb|ACD93410.1| DNA gyrase B subunit [Fusobacterium varium]
          Length = 391

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 181/393 (46%), Positives = 259/393 (65%), Gaps = 2/393 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS W  + +K +G I+   +  G+ +  +   G    + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTT-EHGTTV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F    +IF    ++Y+TL++RL+EL++LN  ++I L D R    ++    ++GGI  F+
Sbjct: 60  RFKADHEIFETLIYDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKKEEFKFEGGIVDFL 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
             +    + L+  PI + G  DN+++D+A  +     E +  F NNI   +GGTH+SG R
Sbjct: 120 KEITEETEKLIPEPIYMTGEVDNVAVDIAFLYTVNQSEIIYSFVNNINTHEGGTHVSGFR 179

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I    +     K+    + G+D REG T+++S+K+P P+F  QTK KL +SEV 
Sbjct: 180 TALTRVINDVGKAQGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVT 239

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V + V   L   LE++P + KII++K+L++   R+AA++AR+L  RK VL++ SLPGK
Sbjct: 240 GIVSTLVGTNLKIVLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGK 299

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS ++P + E+++VEGDSAGGSAKQGR R +QAILPLRGKILNVE+A   K L + E
Sbjct: 300 LADCSSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNE 359

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           +  +ITA GT IG DSF+I KLRY KII+MTDA
Sbjct: 360 VRAMITAFGTSIG-DSFNIEKLRYGKIILMTDA 391


>gi|213609168|ref|ZP_03368994.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 160

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 101/159 (63%), Positives = 128/159 (80%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           VVNALS  L+L I+R+G I+   + +G+   PL VTG  
Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT 160


>gi|308153056|dbj|BAJ22117.1| DNA gyrase subunit B [Bacillus alcalophilus]
          Length = 384

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 191/387 (49%), Positives = 274/387 (70%), Gaps = 4/387 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ I+R+GN+Y   +  G+    L + G +  ++G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTMLEVEIERDGNLYHQKYHQGVPAADLAIIGKSE-NSG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+  F P  +IF     ++YDTL  RLREL+FLN  + I++ DKR  + +    +Y+GGI
Sbjct: 60  TKTHFKPDPEIFQETIVYDYDTLALRLRELAFLNKGLTITITDKR-EDGKSAKYYYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +L+R K+ L   PI I+G +D +++++A+++NDGY  N+  F NNI   +GGTH 
Sbjct: 119 ASFVKHLNRTKEVLHDEPIHIEGEKDGLNVEVAVQYNDGYVGNLYSFANNISTHEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  K+   K++  ++ GDD REG T+++S+K+PDP+F  QTK KL +
Sbjct: 179 SGFKTALTRVINDYARKNSLVKENDPNLTGDDVREGLTAIISVKIPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ +S  ++  S +L E+P  A+ IV+K L AS  R+AA++AR+LTRRK  L++++
Sbjct: 239 SEARTITDSLFSEHFSRFLIENPQVARKIVEKGLMASRAREAAKKARELTRRKSALEVSA 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ +D   SE+++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCASKDASISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLR 496
           ++ EI  +ITA GTG+G D FDI K R
Sbjct: 359 ANNEIRAMITAFGTGVGGD-FDIEKAR 384


>gi|190341288|gb|ACE74721.1| DNA gyrase subunit B [Bacillus megaterium]
          Length = 405

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 204/392 (52%), Positives = 286/392 (72%), Gaps = 4/392 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS+ L++ + R+G ++   +  G+    L V G   + TGT + F P  
Sbjct: 17  LHGVGASVVNALSTSLEVYVHRDGKVHYQKYERGVPAADLKVVGET-DKTGTVIQFHPDG 75

Query: 180 DIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+   ++++DTL +RLREL+FLN  ++I++ DKR  + R     Y+GGI+++V +L+R
Sbjct: 76  EIFTETLEYDFDTLANRLRELAFLNRGIKITIEDKREEDKRRE-YHYEGGIKSYVEHLNR 134

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+ + + PI I+G+RDNIS+++A+++ND Y  N+  F NNI   +GGTH +G ++ALTR
Sbjct: 135 AKEVIHEEPIYIEGNRDNISVEIAIQYNDSYTSNLYSFANNIHTYEGGTHEAGFKTALTR 194

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S
Sbjct: 195 VINDYARKNSVFKDSDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDS 254

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + L  +L E+P+ AK +++K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS
Sbjct: 255 VFAEHLETYLLENPIVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 314

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SEL++VEGDSAGGSAKQGRSR  QAILPLRGKI+NVE+AR DK+LS+ EI T+I
Sbjct: 315 SKDPSISELYVVEGDSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTII 374

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           TALGTGIG D FDI+K RYHKI+IMTDADVDG
Sbjct: 375 TALGTGIG-DDFDISKARYHKIVIMTDADVDG 405


>gi|157073781|dbj|BAF79889.1| gyrase B [Methylobacterium aquaticum]
          Length = 395

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 258/395 (65%), Positives = 313/395 (79%), Gaps = 3/395 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS+WL+LR+ R G  + M F +G   + L V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTWLRLRVWRGGQEHAMDFRHGDAVSALAVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS + F++ +F+Y TL+ RLREL+FLNS V+I L D R  E R   + Y+GG+E
Sbjct: 61  TEVTFLPSPETFTMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHRRDELVYEGGVE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YLDR K+P +++PI ++  RD I +++A+ WND +HENVLCFTNNIPQ+DGGTHL+
Sbjct: 121 AFVRYLDRAKEPQIEAPIVLRQERDGIGVEVALWWNDTFHENVLCFTNNIPQRDGGTHLA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTRQIT Y E S  +KK+K ++ G+DCREG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 181 GFRAALTRQITGYAEASGVTKKEKVALTGEDCREGLTAVVSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VE  +N  L  WLEEHP EA+II  KV  A+  R+AAR+ARDLT RKG LDIASL
Sbjct: 241 EVRPAVEGVMNATLGTWLEEHPNEARIIAAKVALAAAAREAARKARDLTTRKGALDIASL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVERAR DKMLS
Sbjct: 301 PGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARLDKMLS 360

Query: 471 SQEIGTLITALGTGIGQ---DSFDINKLRYHKIII 502
           SQEIGTLITALGTGIG+    +F+ +KLRYH+III
Sbjct: 361 SQEIGTLITALGTGIGRDGAHAFNPDKLRYHRIII 395


>gi|332800583|emb|CBY89781.1| GyrB protein [Flavobacterium flevense]
          Length = 378

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 172/379 (45%), Positives = 246/379 (64%), Gaps = 7/379 (1%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EG 143
             +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGLHGVGVS VNALS+ L   +   +G
Sbjct: 1   VGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSNHLTATVHSSDG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            +Y+  +  G    P+   G      GT VTF P   IF+    ++YDTL  R+RELSFL
Sbjct: 61  KVYQQEYEKGKALYPVKQIGDTS-KRGTIVTFYPDPTIFTQTTEYSYDTLSARMRELSFL 119

Query: 203 NSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           N  + I+  DKR  +              G++ ++ YLD +++P++   I +   + +I 
Sbjct: 120 NKGITITFTDKREIDKDGNFLSEVFHSTEGLKEYIRYLDGNREPIIAHVISMDHDKGDIP 179

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + 
Sbjct: 180 VEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDIS 239

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +AKII
Sbjct: 240 GDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVSEMVENYLEENPNDAKII 299

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+
Sbjct: 300 VQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGT 359

Query: 439 AKQGRSRENQAILPLRGKI 457
           AKQGR R  QAILPLRGKI
Sbjct: 360 AKQGRDRNFQAILPLRGKI 378


>gi|84310496|gb|ABC55396.1| DNA gyrase subunit B [Bacillus sonorensis]
          Length = 390

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 187/392 (47%), Positives = 275/392 (70%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G ++   +  G+    L V G       
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKVHYQEYERGVPKADLKVIGDTDVTG- 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R ++ + + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH 
Sbjct: 120 KSYVEHLNRSREVIHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  ++   K++  ++ G+D REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARRNGVFKENDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++
Sbjct: 240 SEARAITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVV 390


>gi|35210329|dbj|BAC92676.1| gyrase B subunit [Alicyclobacillus acidocaldarius subsp.
           rittmannii]
          Length = 389

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 200/393 (50%), Positives = 276/393 (70%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVG SVVNALS W+++ + R+G+IY   +  G     L V G   + TG
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWMRVEVHRDGSIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y GG+
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L + PI +   +D++++++A+++NDGY   V  F NNI   +GGTH 
Sbjct: 119 AEFVRWLNQSKDVLFEDPIYVSAVKDDVAVEIALQYNDGYAATVYSFANNINTAEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE+   + +  +LEE+P  A+ IV+K + AS  R+AARRAR+LTR K  +D+ S
Sbjct: 239 SEVRGIVETLFAERMQMFLEENPSIARKIVEKCILASRAREAARRARELTRSK-KMDVTS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +++EI  +ITA GTGIG D FDI+K RYHKI+I
Sbjct: 358 ANEEIRAIITACGTGIG-DDFDISKARYHKIVI 389


>gi|148611287|gb|ABQ95832.1| DNA gyrase subunit B [Acidiphilium sp. DX1-13]
          Length = 399

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 232/400 (58%), Positives = 295/400 (73%), Gaps = 9/400 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVG +VVNALS W+++RI R+G  + + F NG    PL V G++ + T
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT VTF PS+  F+  +F++   + RLREL+FLNS + I+L D+R    +E    Y+GG+
Sbjct: 61  GTSVTFRPSAATFTRTEFDFAIYERRLRELAFLNSGLTINLRDERHSAVQEAHFRYEGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
             FVS+LDR K  L   P+          I ++ A+ WND YHE +LCFTNNI Q+DGGT
Sbjct: 121 VEFVSWLDRAKTQLFSPPVTAFKDDAPGGIKVEFALAWNDTYHETMLCFTNNIVQRDGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G RSALTR ++ Y E          S+ G+D REG T+VLS+K+PDP+FSSQTK+KL
Sbjct: 181 HLAGFRSALTRVVSKYAESLGKKDS--LSLSGEDMREGLTAVLSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+ +V++ V D L  W E HP E ++I +KV+DA+  R+AAR+AR+LTRRKGVLDI
Sbjct: 239 VSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRKGVLDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+
Sbjct: 299 STLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 358

Query: 468 MLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIII 502
           ML S EIGTLITALGTGIG     Q  FDI+KLRYH+I+I
Sbjct: 359 MLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVI 398


>gi|21238925|dbj|BAB96568.1| DNA gyrase subunit B [Bogoriella caseolytica]
          Length = 461

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 211/462 (45%), Positives = 293/462 (63%), Gaps = 31/462 (6%)

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DG   V DNGRGIP D+   EG  A EV++T LHAGGKF    Y VSGGLHGVGVSVVN
Sbjct: 2   DDGGIRVVDNGRGIPVDVVPSEGKPAVEVVLTVLHAGGKFGGGGYSVSGGLHGVGVSVVN 61

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALSS L + +KR+G ++ M F++G+   PL   G A  DTGT VTF  S + F   D+++
Sbjct: 62  ALSSRLHVEVKRDGFVWSMDFVDGVPTGPLRQ-GEATEDTGTTVTFWASENTFETTDYSF 120

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPE-------------------------PREITMF 224
           +TL+ R ++++FLN  +++ L D+R+                            RE+T  
Sbjct: 121 ETLRSRFQQMAFLNKGLKLVLTDERAGVTDVGDEITGEAGESAEGVDLTPRTGHREVTYK 180

Query: 225 YKGGIEAFVSYLDRHK--KPLMQSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNNI 280
           Y  G+  +V++L+  K  +P+    I ++    +  +  ++A++W   + E+V  + N I
Sbjct: 181 YDNGLRDYVAHLNSAKRSEPVHPEIITLEAEDTDRQLSAEIALQWTGAFSESVHSYANTI 240

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G RSALT  +  Y       K+   ++ G+D REG T+V+S+K+ +P+F 
Sbjct: 241 STTEGGTHEEGFRSALTSLLNKYARDKGFLKERDDNLTGEDIREGLTAVISVKLGEPQFE 300

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++E R+ V++ +   L  WL+ HP EAK I +K   A+  R AAR+AR+ TR
Sbjct: 301 GQTKTKLGNTEARTFVQTQLYSHLGDWLDAHPGEAKDIFRKGQQAAAARLAARKAREATR 360

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK +L+ AS+PGKL DCS RDP++SE+FLVEGDSAGGSA +GR  E QAILPLRGKILNV
Sbjct: 361 RKSLLESASMPGKLKDCSTRDPRRSEIFLVEGDSAGGSAVRGRDPETQAILPLRGKILNV 420

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D+ L +QEI  LITA GTGIG++ FDI KLRYHKI++
Sbjct: 421 EKARLDRALGNQEIQALITAFGTGIGEE-FDITKLRYHKIVL 461


>gi|19909575|dbj|BAB86983.1| DNA gyrase subunit B [Caulobacter henricii]
          Length = 402

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 256/402 (63%), Positives = 308/402 (76%), Gaps = 10/402 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-- 168
           Q SYKVSGGLHGVGVSVVNALS WL+L+I R G+ Y+M F  G     L  TG +     
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELKIHRNGHSYQMRFERGDAVTSLAQTGDSPVRAD 60

Query: 169 --------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                   TGTEVTF PS D F+  DF+  TL+HRLREL+FLNS V I   D R   P E
Sbjct: 61  GPKAGTTLTGTEVTFFPSKDTFAFIDFDRKTLEHRLRELAFLNSGVTIYFRDLRDAAPWE 120

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
             + Y+GGIEAFV +LD+ K PL++ PI I+G +D + +DLA+ WND YHE++LCFTNNI
Sbjct: 121 EKLHYEGGIEAFVRHLDKAKTPLLKMPIVIRGRKDKVEVDLALWWNDSYHEHMLCFTNNI 180

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHLS  R ALTR IT+Y E S  +KK+K +V G+D REG T VLS+K+PDP+FS
Sbjct: 181 PQRDGGTHLSAFRGALTRIITNYAESSGITKKEKVNVGGEDAREGLTCVLSVKVPDPKFS 240

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEVR  VE  V +GL+ W EEHP EAK IV K+ +A+  R+AAR+AR+LTR
Sbjct: 241 SQTKDKLVSSEVRPAVEGLVQEGLATWFEEHPNEAKAIVSKIAEAAAAREAARKARELTR 300

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  LDI SLPGKLADCSERDP KSE+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNV
Sbjct: 301 RKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNV 360

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ERARFDKMLSS +IGTLITALG GIG+D F+ +K+RYHKI++
Sbjct: 361 ERARFDKMLSSDQIGTLITALGAGIGRDDFNADKVRYHKIVL 402


>gi|297614600|gb|ADI48602.1| DNA gyrase subunit B [Shewanella haliotis]
          Length = 383

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 222/386 (57%), Positives = 295/386 (76%), Gaps = 4/386 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+R+G +YE  + +G    P+   G A   TGTE+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEAT-KTGTEIRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS + F+  +F+Y+ L  R+RELSFLNS V I LID+R  +       Y+GGI+AFV Y
Sbjct: 60  WPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLIDERDNKD--EFFHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+R+K P+ +        R++ I++++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R+
Sbjct: 118 LNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+ 
Sbjct: 178 ALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKG 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKL
Sbjct: 238 AVEQTMAEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYHKI 500
            TLITALG GIG+D +D  K RYH I
Sbjct: 358 ATLITALGCGIGRDEYDPEKTRYHYI 383


>gi|157073779|dbj|BAF79888.1| gyrase B [Methylobacterium aminovorans]
          Length = 399

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 251/399 (62%), Positives = 307/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS  LKLRI R G  + M F +G    PL V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVSLKLRIWRAGKEHRMEFHHGDAVAPLEVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS D F++ +F++ TL+ RLREL+FLNS V+I L D R  E R   + Y+GG+E
Sbjct: 61  TEVTFLPSPDTFTMTEFDFATLEKRLRELAFLNSGVRIVLTDARHAEHRREELCYEGGVE 120

Query: 231 AFVSYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +KP+  M  P+ + G RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKPVDGMAKPVTVLGERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQ+T Y E S  +KK+K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQLTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|302746257|gb|ADL62719.1| GyrB [Morganella morganii subsp. morganii]
          Length = 386

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 232/389 (59%), Positives = 295/389 (75%), Gaps = 4/389 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVN LS  L+L I+R+G ++E  + +G   + L V G   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTGTR 59

Query: 173 VTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS D F    +F YD L  RLRELSFLNS V I LIDKR  +       Y+GGI+A
Sbjct: 60  VRFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL R K  +  +       +D+I ++++M+WND + ENV CFTNNIPQ+DGG HL+G
Sbjct: 118 FVEYLSRAKTSIHNNVFYFSTEKDDIGVEISMQWNDSFQENVYCFTNNIPQRDGGAHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+A+TR + SY+EK   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V++ VE+ +N+ LS +L+E+P + KIIV K++DA+  R+AARRAR++TRRKG LD+A LP
Sbjct: 238 VKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALDLAGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+S
Sbjct: 298 GKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLAS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKI 500
           QE+ TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 QEVATLITALGCGIGRDEYNPDKLRYHSI 386


>gi|3320890|gb|AAC26518.1| DNA gyrase beta-subunit [Aeromonas hydrophila]
          Length = 392

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 229/395 (57%), Positives = 294/395 (74%), Gaps = 4/395 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI-KREGNIYEMSFINGILDNPLVVTGSAGND 168
           +  SYK SGGLHGVGVSVVNALS  L L I      +Y+ ++  G    P+   G +   
Sbjct: 1   DDNSYKASGGLHGVGVSVVNALSDKLLLTIACVTATVYKQTYHLGEPQAPIKQIGDST-G 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGTEV F PS  IFS    +Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GG
Sbjct: 60  TGTEVRFWPSPAIFSDTLIHYEILAKRLRELSFLNSGVFIRLQDER--DGREAHFCYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV YL+++K P+          +D I +++AM+WND Y + V CFTNNIP++DGGTH
Sbjct: 118 IKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDTYQDGVYCFTNNIPERDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L GLR+ LTR + SY++K   SKK K +  GDD R+G  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LDGLRTVLTRTLNSYMDKKDYSKKAKSAASGDDVRKGLIAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA
Sbjct: 238 SSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           +SSQE+GTLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 ISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIM 392


>gi|258569355|ref|XP_002543481.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
 gi|237903751|gb|EEP78152.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
          Length = 1704

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 150/699 (21%), Positives = 258/699 (36%), Gaps = 53/699 (7%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT----------------------DGES 39
           +   Q+     D  Q L   + + +RP  YIG                            
Sbjct: 119 ASTAQSKGNSGDQYQKLTQKEHIIRRPDTYIGSVERTQQQMWVFNSTTEQMEFREVSYVP 178

Query: 40  GLHHMIYEVLDNAIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGI 93
           GL+ +  E+L NA D      S+      I VTL+ + G  +V +NGRGIP ++H +E I
Sbjct: 179 GLYKIFDEILVNAADNKQRDSSM----SEIRVTLDKEAGEISVWNNGRGIPVEIHSKEKI 234

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFI 151
              E+I   L     ++    KV+GG +G G  + N  S+   +          Y+ ++ 
Sbjct: 235 YIPELIFGHLLTSSNYDDDQAKVTGGRNGYGAKLCNIFSTEFTVETADSNSKKKYKQTWK 294

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           + +             D  T++TF P    F ++  + D      R +  L  + ++++ 
Sbjct: 295 DNMSVMGKAKIADVKGDDYTKITFKPDFMKFGMEGMDDDFEALVKRRVYDLAGTCKVNVK 354

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
              +         Y       +       +        I     +   ++    +DG  +
Sbjct: 355 LNGTKIALRGFKKYMEMYTKAIKNERG--EEATSDKSEIVTDSPDPRWEIGFAVSDGSFQ 412

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N+I    GGTH++ +   +  ++   V+K   +      +     R      ++
Sbjct: 413 QV-SFVNSIATTSGGTHVNYISDQICAKLAESVKKKNKTGPL---LKPAQIRNHIFLFVN 468

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             + +P F+SQTKE+L +   +   +  +++     + +  +   I+      A  +   
Sbjct: 469 CLIVNPAFTSQTKEQLTTKPSQFGSKCTLSEDFLKKILKTQVMQNIMHFAEQKADQILKK 528

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQ 448
              +R        L  A+  G       ++     L L EGDSA G A  GR+    +  
Sbjct: 529 TDGSRRARMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLF 582

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            + PLRGK+LNV  A  D++  +QEI  +   LG    ++  D   LRY  ++IMTD D 
Sbjct: 583 GVFPLRGKLLNVRDASVDQISKNQEIQNIKNFLGLQHKKEYADTRGLRYGHLMIMTDQDH 642

Query: 509 DGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           DG+HI+ LL+ +     PSL+   GFL     P+  + +G   Q    +           
Sbjct: 643 DGSHIKGLLINYLQVAFPSLLKIPGFLIEFITPIVKVWKGDPKQPTATKSFFTIPEYEAW 702

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
                      K         +  D  +    L +     H     E  +I   F+ +  
Sbjct: 703 KEVHGHDRRWDKKYYKGLGTSSTEDAEIYFRDLDRHLKEFHALQDNEAQLIDLAFSKKKA 762

Query: 628 QEINVSLAS-KLANRLNFIAEKSEKSWHGSINNSDILVK 665
            E    L   K    L+   EK   S+   IN   IL  
Sbjct: 763 DERKEWLRQFKPGTYLDHSVEKI--SYTDFINKELILFS 799


>gi|226326915|ref|ZP_03802433.1| hypothetical protein PROPEN_00775 [Proteus penneri ATCC 35198]
 gi|225204752|gb|EEG87106.1| hypothetical protein PROPEN_00775 [Proteus penneri ATCC 35198]
          Length = 430

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 245/429 (57%), Positives = 321/429 (74%), Gaps = 4/429 (0%)

Query: 162 TGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G     +GT V F PS + F    +F YD L  RLRELSFLNS V I LIDKR  + RE
Sbjct: 2   IGDTE-KSGTFVRFWPSLETFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKR--DNRE 58

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+AFV YL R+K P+ Q+       +D I +++AM WNDG+ ENV CFTNNI
Sbjct: 59  DHFHYEGGIKAFVEYLSRNKTPIHQNVFYFSTEKDGIGVEVAMLWNDGFQENVYCFTNNI 118

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL G R+A+TR + +Y++K   +KK K S  GDD REG  +V+S+K+PDP+FS
Sbjct: 119 PQRDGGTHLVGFRTAMTRTLNNYMDKEGFNKKSKISATGDDAREGLIAVISVKVPDPKFS 178

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TR
Sbjct: 179 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKIVVGKIIDAARAREAARKAREMTR 238

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG LD+  LPGKLADCSERDP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNV
Sbjct: 239 RKGALDLGGLPGKLADCSERDPAFSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNV 298

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+ARFDKML+SQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTF
Sbjct: 299 EKARFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTF 358

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F+RQMP +I  G ++I +PPLY + +GK  QY+KD++++++YL++ +L        +   
Sbjct: 359 FYRQMPEIIERGHIFIAQPPLYKVKKGKQEQYIKDDDAMDEYLMSIALDGAALYISEHAP 418

Query: 581 VISKNDLRN 589
            +    L  
Sbjct: 419 AMHGEQLEK 427


>gi|41387046|gb|AAS01481.1| GyrB [Bacillus sp. H-04]
          Length = 390

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 190/393 (48%), Positives = 275/393 (69%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     +++DTL  R+RE +FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFQETTVYDFDTLATRMRESAFLNRNIKLTIEDKRKHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VE DSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEDDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ T+ITA+GT IG D FDI K RYHK+II
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHKVII 390


>gi|41387062|gb|AAS01486.1| GyrB [Bacillus sp. H-17]
          Length = 390

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 188/393 (47%), Positives = 276/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + REG I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     +++ TL  R+R+L+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFQETTVYDFHTLATRMRDLAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  +TK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGRTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AAR+AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAARKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS ++P  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR +K+L
Sbjct: 299 LPGKLADCSSKEPAISEIYIVEGDSAGGSAKQGRDRHCQAILPLKGKIINVEKARLEKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ E+ T+ITA+GT IG D FDI K RYHK+II
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHKVII 390


>gi|22762027|dbj|BAC11800.1| gyrase B [Campylobacter coli]
          Length = 386

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 195/392 (49%), Positives = 265/392 (67%), Gaps = 6/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           + +YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   + G +   TG
Sbjct: 1   KDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFDIIGKSK-KTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F P   IF V +FNYD L  R REL++LN  + I+  D R  +    +  ++GGI 
Sbjct: 60  TTIEFWPDDTIFEVTEFNYDILAKRFRELAYLNPKITINFKDNRVDKS--ESFHFEGGIS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FVS  D +KK  +  PI      +++++++A+ +ND Y EN+L F NNI   DGGTH +
Sbjct: 118 QFVS--DLNKKEALTKPIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEA 175

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LTR I++Y+E +  +++    + GDD REG  +V+S+K+P+P+F  QTK KL SS
Sbjct: 176 GFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSS 235

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            VR +V     + LS + EE+P+EAK I+   L A   R+AA++AR+LTR+K  L + +L
Sbjct: 236 YVRPIVSKASFEYLSKYFEENPIEAKAIMNIALMAGRGREAAKKARELTRKKESLSVGTL 295

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L 
Sbjct: 296 PGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILK 355

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++I  +ITA G GIG+D FD++KLRYHKIII
Sbjct: 356 SEQIQNMITAFGCGIGED-FDLSKLRYHKIII 386


>gi|19909617|dbj|BAB87004.1| DNA gyrase subunit B [Oceanospirillum beijerinckii]
          Length = 387

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 230/390 (58%), Positives = 293/390 (75%), Gaps = 3/390 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L + R G ++E  +I+G+   PL V G       TE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLTLTVWRSGKVHEQVYIHGVPQEPLRVIGETTKTG-TE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
             F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R+ +       Y+GG+ AF
Sbjct: 60  TRFHPSAETFSNIEFHYDILAKRLRELSFLNSGVSIILIDERTGKS--DNFKYEGGLSAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K  L           D + +++A++WND Y EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNQNKTALNSVFHFSSEREDGVGVEVALQWNDSYQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAALTRTLNSYMEQDPKIKKDKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +   LS +L+E+P EAK IV K+L+A+  R+AAR+AR++TRRKG LDIA LPG
Sbjct: 238 KTAVEQEMGRLLSDYLQENPNEAKSIVNKMLEAARAREAARKAREMTRRKGALDIAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSS 
Sbjct: 298 KLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSA 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+GTLITA+G GIG++ F+ +KLRYH III
Sbjct: 358 EVGTLITAMGCGIGREEFNPDKLRYHSIII 387


>gi|148616456|gb|ABQ96971.1| GyrB [Nocardiopsis halotolerans]
          Length = 403

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 188/404 (46%), Positives = 267/404 (66%), Gaps = 6/404 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ KSY VSGGLHGVGVSVVNALS+ L + I+R+G+++   +      
Sbjct: 2   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTALDVEIRRDGHVWRQHYEMTRPT 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             L V G   ++TGT++TF P  +IF    F ++TL  R++E++FLN  + I++ D+R  
Sbjct: 62  GDL-VRGEETDETGTQITFWPDGNIFETTSFTFETLARRMQEMAFLNKGLSITIRDERPE 120

Query: 217 E----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                P   T  Y+GG+  +V +++  K+P   S I  +   + +S ++AM+WN  Y  +
Sbjct: 121 HTDGGPEVNTFHYEGGLSDYVRHINAKKEPAHASIISFEEDGEGLSAEIAMQWNQSYTSS 180

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G RSALT  +  Y  +    ++   ++ GDD REG T+++S+
Sbjct: 181 VHTFANTINTAEGGTHEEGFRSALTTLVNRYAREQRLLREKDDNLTGDDIREGLTAIISV 240

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++E +S V+   N+ L  W E +P EAK IV K   A+  R AA
Sbjct: 241 KLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAARARVAA 300

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+ARDLTRRK +L+  SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR   +QAILP
Sbjct: 301 RQARDLTRRKTLLESTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPHHQAILP 360

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           +RGKILNVE++R D++L + E+  +ITALGTGI +D FD +KLR
Sbjct: 361 IRGKILNVEKSRIDRILKNAEVQAIITALGTGIHED-FDASKLR 403


>gi|35210337|dbj|BAC92680.1| gyrase B subunit [Alicyclobacillus hesperidum]
          Length = 389

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 201/391 (51%), Positives = 273/391 (69%), Gaps = 5/391 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            YKVSGGLHGVG SVVNALS WLK+ + R+G I+   +  G     L V G   + TGT 
Sbjct: 3   GYKVSGGLHGVGASVVNALSEWLKVEVHRDGKIHVQEYERGTPLYDLKVVGET-DRTGTT 61

Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           VTF P  +IF+    F+ +TLQ+RLREL+FLN+ ++I L D+R    R     Y+GG++ 
Sbjct: 62  VTFRPDPEIFTETTEFSAETLQNRLRELAFLNAGLEIVLEDEREGGKRFE-YHYEGGVKE 120

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL+  K  L   PI +QG +D +++++A+++NDGY   +  F NNI   +GGTH +G
Sbjct: 121 FVLYLNHSKDVLFAEPIYVQGVKDEVTVEIALQYNDGYSSTLYSFANNINTGEGGTHEAG 180

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +SALTR I  Y  ++   K    S+ GDD REG T+V+S+K+P+P+F  QTK KL +SE
Sbjct: 181 FKSALTRIINDYGRRNNLIKGSDGSLTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGNSE 240

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR +VES   + L  +LEE+P  A+ I++K + A+  R+AA+RAR+LTR K  +++ SLP
Sbjct: 241 VRGIVESLFGERLQIFLEENPAVARRILEKCVLAARAREAAKRARELTRNK-KMEVTSLP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL DC  +DP+ SEL+LVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+LS+
Sbjct: 300 GKLTDCVSKDPEVSELYLVEGDSAGGSAKGGRDPQTQAILPLRGKIINVEKARLDKVLSN 359

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +EI  +ITA GTGIG D FD++K RYHKI+I
Sbjct: 360 EEIRAIITACGTGIG-DEFDLSKARYHKIVI 389


>gi|11078709|dbj|BAB17359.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 389

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 222/392 (56%), Positives = 296/392 (75%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  L+L I+R   ++E  + +G+   PL   G   + +G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F PS + FS   F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++
Sbjct: 60  TEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K  + +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMGKYFADFLLENPNEAKSVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SSQE+GTLITALG GIG++ ++I+KLRYH II
Sbjct: 358 SSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|19909577|dbj|BAB86984.1| DNA gyrase subunit B [Caulobacter henricii]
          Length = 400

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 254/400 (63%), Positives = 314/400 (78%), Gaps = 10/400 (2%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--- 169
           SYKVSGGLHGVGVSVVNALS WL+L+I R+G  ++M F  G     L VTG+A   T   
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLELKIYRDGKQHQMRFERGDTVKSLEVTGTAPIRTTGD 60

Query: 170 -------GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                  GTEVTF PS   FS  DF++ TL+HRLREL+FLNS V I L D R  EP ++T
Sbjct: 61  KAGQPLSGTEVTFFPSITTFSHIDFDFKTLEHRLRELAFLNSGVVIRLADMRHAEPIDVT 120

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           + Y+GG+EAFV +LD+ K+PL++  I I+G ++ I +DLA+ WND YHE +LCFTNNIPQ
Sbjct: 121 LHYEGGVEAFVRHLDKSKQPLLKDVIVIRGKKEGIELDLALWWNDSYHETMLCFTNNIPQ 180

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHLS  R++LTR +  Y+E S  +KK+K +  G+D REG T VLS+K+PDP+FSSQ
Sbjct: 181 RDGGTHLSAFRASLTRVMGGYIESSGLAKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQ 240

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEVR  VE+  ++GLS W EEHP+EAK+IV K+++A+  R+AAR+ARDLTRRK
Sbjct: 241 TKDKLVSSEVRPAVEALCSEGLSTWFEEHPVEAKMIVAKIIEAASAREAARKARDLTRRK 300

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+I+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVER
Sbjct: 301 SALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVER 360

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ARFD+MLSS  IGTLI ALGTGIG+D F+ +KLRYHKII+
Sbjct: 361 ARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 400


>gi|308153060|dbj|BAJ22119.1| DNA gyrase subunit B [Aneurinibacillus aneurinilyticus]
          Length = 389

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 212/393 (53%), Positives = 280/393 (71%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            + YKVSGGLHGVGVSVVNALS  L + +KR G  Y   F  G   + L + G A  DTG
Sbjct: 1   GEGYKVSGGLHGVGVSVVNALSKKLTIEVKRNGKRYIQHFAIGEPVDELTIAGEAE-DTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+VTF+P  +IF+    ++Y+ LQ RLRELSFLN  V+I+L D+R  +       Y+GGI
Sbjct: 60  TKVTFMPDPEIFTETIVYDYEILQKRLRELSFLNRGVRITLHDERIGKE--EEFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV YL+++K+ L + PI ++G +D + +++A+++ND +  N+  + NNI   +GGTH 
Sbjct: 118 LSFVEYLNKNKEKLHEPPIFLEGEKDGLMVEIALQYNDSFASNIYSYANNIHTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K    K+   +++GDD REG T+++S+K+PDP+F  QTK KL +
Sbjct: 178 SGFKSALTRVINDYARKHNLLKEKDDNLMGDDVREGLTAIISVKIPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R + ES   +    +LEEHP EAK IV+K L AS  R+AAR+AR+LTRRK  L+ +S
Sbjct: 238 SEARGITESLFAEHFFIYLEEHPQEAKRIVEKSLTASRAREAARKARELTRRKNALEFSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS RD   SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+AR DK+L
Sbjct: 298 LPGKLADCSSRDASISELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITALGTGIG+D FDI K RYH+III
Sbjct: 358 SNAEIRAIITALGTGIGED-FDIAKARYHQIII 389


>gi|159146578|gb|ABW90733.1| DNA gyrase beta subunit [Vibrio chagasii]
          Length = 381

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 228/383 (59%), Positives = 294/383 (76%), Gaps = 3/383 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F
Sbjct: 1   VSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIGDT-DQTGTEIRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS + FS   F+YD L  RLRELSFLNS V I LID+R  E +     ++GGI+AFV +
Sbjct: 60  WPSEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGIQAFVDH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+
Sbjct: 119 LNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRA 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 179 ALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 238

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  + + LS +L E+P EAK +  K++DA+  RDAAR+AR++TRRKG LD+A LPGKL
Sbjct: 239 AVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKL 298

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 299 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 358

Query: 475 GTLITALGTGIGQDSFDINKLRY 497
            TLITALG GIG+D ++ +KLRY
Sbjct: 359 ATLITALGCGIGRDEYNPDKLRY 381


>gi|11078711|dbj|BAB17360.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
 gi|11078713|dbj|BAB17361.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 389

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 222/392 (56%), Positives = 296/392 (75%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  L+L I+R   ++E  + +G+   PL   G   + +G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F PS + FS   F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++
Sbjct: 60  TEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K  + +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SSQE+GTLITALG GIG++ ++I+KLRYH II
Sbjct: 358 SSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|126035236|gb|ABN72371.1| gyrase B subunit [Escherichia coli]
          Length = 382

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 230/385 (59%), Positives = 295/385 (76%), Gaps = 4/385 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWP 59

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL
Sbjct: 60  SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+
Sbjct: 118 NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 178 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLAD
Sbjct: 238 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKII 501
           LITALG GIG+D ++ +KLRYH II
Sbjct: 358 LITALGCGIGRDEYNPDKLRYHNII 382


>gi|307939296|gb|ADN95839.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 422

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 198/423 (46%), Positives = 280/423 (66%), Gaps = 21/423 (4%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT L AGGKF++ SYKVSGGLHGVGVS VNALS+ LK+ ++R G+ YE  +  GI    +
Sbjct: 1   MTVLXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---- 215
              G +  + GTEV FLP + IF+  ++ YDT+  RLR+LS+LN  ++I+L D+R     
Sbjct: 61  KEVGLSE-EHGTEVQFLPDASIFTETEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLEG 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
              R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y ENV 
Sbjct: 120 GVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTPVEVALQYNTSYQENVY 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTH++G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S+K+
Sbjct: 180 SYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R AAR+
Sbjct: 240 QEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIAARK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAILPLR
Sbjct: 300 AKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGT---------------GIGQDSFDINKLRYHK 499
           GKILNVE+A+  ++L ++EI  +ITALG                G      + +KLRYHK
Sbjct: 360 GKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSKLRYHK 419

Query: 500 III 502
           +II
Sbjct: 420 VII 422


>gi|41387053|gb|AAS01483.1| GyrB [Bacillus sp. H-10]
          Length = 390

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 190/393 (48%), Positives = 275/393 (69%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG  VVNALS+ L++ + REG I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGAPVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     +++DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++++++N+GY  N+  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ IV+K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            + E+ T+ITA+GT IG D FDI K RYHK+II
Sbjct: 359 PNDEVRTIITAIGTNIGGD-FDIEKARYHKVII 390


>gi|32364170|gb|AAP80233.1| GyrB [Pasteurella canis]
          Length = 382

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 232/385 (60%), Positives = 294/385 (76%), Gaps = 3/385 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  +  G  + PL   G   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSGKLQLTIRRQGKVHEQIYHLGEPEAPLAAIGET-DQTGTS 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F PS  IF+  +F YD L  RLRELSFLNS V I L DKR+   R+    Y+GGI+AF
Sbjct: 60  VRFWPSPTIFNNIEFEYDILAKRLRELSFLNSGVSIKLFDKRND--RQDHFHYEGGIQAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+R+K P+ Q P      +D I ++++M+WND ++ENV CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNRNKNPIHQKPFYFSTEKDGIGVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGY 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
             ALTR + +Y+E    +KK K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 PVALTRSLNNYIENEGHNKKSKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VES +N+ L  +L E+P +AKIIV K++DA+  R+AAR+AR++TRRKG LD+  LPG
Sbjct: 238 KSAVESVMNEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS 
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRY 497
           E+GTLITALG GIG+D ++  KLRY
Sbjct: 358 EVGTLITALGCGIGRDEYNPEKLRY 382


>gi|269216531|ref|ZP_06160385.1| DNA gyrase, B subunit [Slackia exigua ATCC 700122]
 gi|269130060|gb|EEZ61142.1| DNA gyrase, B subunit [Slackia exigua ATCC 700122]
          Length = 516

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 216/513 (42%), Positives = 301/513 (58%), Gaps = 12/513 (2%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQ 193
           +++ + R+G+ Y + F  G+    L   G++   TGT VTF P  +IF+    ++Y  LQ
Sbjct: 1   MEVDVCRDGSRYRIVFERGVTTEKLKRIGNSK-KTGTIVTFWPDPEIFTDTTVYDYSILQ 59

Query: 194 HRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           +R RE++FLN  + I + D+R       P   +  Y GGI  FV YL+  K+ L   PI 
Sbjct: 60  NRFREMAFLNRGLHIEMHDERDLDEEGNPHTDSFQYAGGIVDFVKYLNNGKETLN-KPIY 118

Query: 250 IQGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            +    + ++++AM+W   Y  N V  F NNI   +GGTHL G ++ALTR I  Y     
Sbjct: 119 FEAENKDGTVEIAMQWTTSYSANGVEAFANNINTTEGGTHLEGFKNALTRTINDYARAKG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K+   ++ GDD REG ++V+S+K+ +P+F  QTK KL ++E+R +V+  V  GL+ +L
Sbjct: 179 LLKEKDSNLTGDDAREGLSAVISVKLHEPQFEGQTKTKLGNTEIRGLVQGAVTKGLAEYL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK IV K   A   R+AAR+AR++TRRKGVLD  S+PGKLADCS RDP   E+F
Sbjct: 239 EENPTPAKRIVNKASQALKAREAARKAREMTRRKGVLDSFSMPGKLADCSSRDPSACEIF 298

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQ R R+ QAILPLRGKILNVERA   + LSS  I +LITA+GT IG+D
Sbjct: 299 IVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTISSLITAIGTNIGED 358

Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548
            +D  K RYH+IIIMTDADVDGAHIR LLLTFF+R MP LI+ G++YI +PPLYG+ +  
Sbjct: 359 -YDGEKARYHRIIIMTDADVDGAHIRCLLLTFFYRYMPDLINRGYVYIAQPPLYGLKKKN 417

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
           S      +     Y          +L    K  + +      +D     +  ++      
Sbjct: 418 S---ASGKILKYIYNDEAKDELVAKLENPDKYEMQRYKGLGEMDPQQLWETTMEPETRTL 474

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
            +  IE A  + +   E   E+       +   
Sbjct: 475 LQVDIEDAAAAELAVSELMGELVEPRKEFIQKH 507



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793
             MQRYKGLGEM+  QLWETT+ P+TR+LL+V I DA+ A+   S LMG+ VEPR+EFIQ
Sbjct: 446 YEMQRYKGLGEMDPQQLWETTMEPETRTLLQVDIEDAAAAELAVSELMGELVEPRKEFIQ 505

Query: 794 ENSLPSA-LDI 803
           +++     LDI
Sbjct: 506 KHARDVRFLDI 516


>gi|19909631|dbj|BAB87011.1| DNA gyrase subunit B [Rhodobacter capsulatus]
          Length = 397

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 242/397 (60%), Positives = 295/397 (74%), Gaps = 6/397 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGVSVVNALS WL+L++ R   +Y   F  G     +   G A  + GT
Sbjct: 1   NAYKVSGGLHGVGVSVVNALSDWLELKVWRNDKVYFARFEKGDCVVHVHEIGEAPGEKGT 60

Query: 172 EVTFLPSSDI------FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           EV F+ SS        FS  D+ + TL+ RLREL+FLNS V+I L D+R  EP    + Y
Sbjct: 61  EVRFMASSKTNDPEGTFSNLDYVFKTLETRLRELAFLNSGVRIILEDERPAEPLRSELHY 120

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG+  FV YLDR K  +M  PI + G    I +++AM WND YHE VL FTNNIPQ+DG
Sbjct: 121 DGGVREFVKYLDRSKTAVMPDPIYMVGEVRGIGVEVAMWWNDSYHETVLPFTNNIPQRDG 180

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R ALTR IT Y + S  +K++K    GDD REG T VLS+K+PDP+FSSQTK+
Sbjct: 181 GTHLAGFRGALTRTITKYAQDSGIAKREKIDFTGDDAREGLTCVLSVKVPDPKFSSQTKD 240

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR  VE+ VN+ L+ W EEHP EAK IV K+++A++ R+AAR+AR+LTRRK  +
Sbjct: 241 KLVSSEVRPAVENLVNEKLAEWFEEHPTEAKGIVGKIIEAALAREAARKARELTRRKTAM 300

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D+ASLPGKLADC E+DP  SE+FLVEGDSAGGSAKQGR R+NQA+LPLRGKILNVERARF
Sbjct: 301 DVASLPGKLADCQEKDPALSEVFLVEGDSAGGSAKQGRERKNQAVLPLRGKILNVERARF 360

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D+MLSS +IGTLITALGTGIG+D F+I KLRYHKI+I
Sbjct: 361 DRMLSSDQIGTLITALGTGIGRDEFNIAKLRYHKIVI 397


>gi|126035366|gb|ABN72436.1| gyrase B subunit [Yersinia enterocolitica]
          Length = 380

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 226/383 (59%), Positives = 293/383 (76%), Gaps = 4/383 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWP 59

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL
Sbjct: 60  SFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+
Sbjct: 118 NKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 238 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTGIGQDSFDINKLRYHK 499
           LITALG GIG+D ++ +KLRYH 
Sbjct: 358 LITALGCGIGRDEYNPDKLRYHN 380


>gi|19909693|dbj|BAB87042.1| DNA gyrase subunit B [Ochrobactrum anthropi]
          Length = 393

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 253/394 (64%), Positives = 309/394 (78%), Gaps = 4/394 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG +TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGAETGT 60

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV+FLPS D FS+ +F++DTL+ RLREL+FLNS V+I L D+R  +  E  + Y GG+  
Sbjct: 61  EVSFLPSPDTFSMVEFDFDTLERRLRELAFLNSGVRIKLTDRRHADVVEHELHYDGGLVE 120

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y+D+ KK L+  PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G
Sbjct: 121 FVKYIDQSKKSLLDEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAG 180

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTRQ+T Y + S  +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSE
Sbjct: 181 FRGALTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSE 240

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR VVES VN+ LS WLEEHP   KI+V+KV+ A      A R      RK  L + SLP
Sbjct: 241 VRPVVESLVNEALSTWLEEHPAGGKIVVEKVIQA-AAAREAARKARDITRKSNLSVTSLP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS
Sbjct: 300 GKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISS 359

Query: 472 QEIGTLITALGTGIGQ---DSFDINKLRYHKIII 502
            ++GTLITALGT IG+     F+ +KLRYHKIII
Sbjct: 360 DQVGTLITALGTSIGKDETHGFNPDKLRYHKIII 393


>gi|126035238|gb|ABN72372.1| gyrase B subunit [Enterobacter cloacae]
          Length = 382

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 230/385 (59%), Positives = 296/385 (76%), Gaps = 4/385 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG   + TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYTHGVPQAPLAVTGDT-DKTGTMVRFW 59

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV Y
Sbjct: 60  PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 118 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 238 VEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKI 500
           TLITALG GIG+D ++ +KLRYH I
Sbjct: 358 TLITALGCGIGRDEYNPDKLRYHSI 382


>gi|164690655|dbj|BAF98611.1| gyrase B [Sporolactobacillus nakayamae subsp. nakayamae]
          Length = 389

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 190/393 (48%), Positives = 270/393 (68%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y+VSGGLHGVG SVVNALS+ + +++ R G++Y   +  G     L + G + + TG
Sbjct: 1   GGGYEVSGGLHGVGASVVNALSTTMWVKVYRNGHVYYQEYHRGKPAADLKIIGDS-DQTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDT-LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF+         L+ R+REL+FLN +++IS+ D+R  E ++ T  Y+GGI
Sbjct: 60  TTTHFDPDPEIFTDTTTFDYDTLRVRVRELAFLNKNIRISIEDRR-EEDKKETFHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V YL+R K+ + Q    ++G +D I +++AM++N G+   +  F NNI   +GGTH 
Sbjct: 119 RSYVEYLNRSKEVIHQPID-LEGEKDGIKVEIAMQYNSGFASQLYSFANNIHTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G + ALTR I  Y  K+   K    ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 178 YGFKVALTRVINDYARKNQFVKSSDPNLTGDDVREGLTAIVSIKHPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR++ ++  ++  S +L E+P  A++I++K + AS  R AA++AR+LTRRK  L+++S
Sbjct: 238 SEVRAITDTLFSEAFSRFLLENPDVARLIIEKGIVASRARTAAKKARELTRRKSSLEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRLFQAILPLRGKILNVEKARLDRIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITALGTGIG D F+++K RYHKIII
Sbjct: 358 SNAEIRAMITALGTGIG-DEFNLDKARYHKIII 389


>gi|119473123|ref|XP_001258508.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
 gi|119406660|gb|EAW16611.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
          Length = 1735

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 152/715 (21%), Positives = 264/715 (36%), Gaps = 59/715 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------G 40
           D    S+  ++  Q L  L+ + KRP  YIG  +  +                      G
Sbjct: 118 DQPAKSTNASEKYQKLTQLEHIIKRPDTYIGSVERTTQFMWVYDSEMEGMKYREVSYVPG 177

Query: 41  LHHMIYEVLDNAIDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
           L+ +  E++ NA D     +     D I VT++ + G  +V +NGRGIP ++H +EGI  
Sbjct: 178 LYKIFDEIVVNAADNKQNDANM---DEIRVTIDRESGEISVWNNGRGIPIEIHAKEGIYV 234

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+   +  +  R+   Y+ ++ N 
Sbjct: 235 PELIFGHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTNN 294

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +          A  D  T+VTF P    F ++  + D      R +  L  + ++++   
Sbjct: 295 MSKMGKAKITDAKGDDYTKVTFKPDYAKFGMEGMDDDFEALVKRRVYDLAGTAKVAVKLN 354

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
            S  P      Y       +      +    +    I     +   ++    +DG    V
Sbjct: 355 GSRIPVRNFKKYMEMYTKAIRRERGEEDTNAKDE--IITCSPDPHWEIGFTVSDGSFHQV 412

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GGTH++ +   +  ++   V+K   +     ++     R      ++  
Sbjct: 413 -SFVNSIATTSGGTHVNYIADQICARLADQVKKKNKNG---ATLKPAQIRNHIFIFVNAL 468

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P F+SQTKE+L +   +   +  + +     + +  +   I+      A  +     
Sbjct: 469 IVNPAFTSQTKEQLTTKSSQFGSKCTLEEDFYKKILKTEVMNNILHFAQAKADQLLKKTD 528

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAI 450
             R        L  A+  G       +D     L L EGDSA G A  GR+    +   +
Sbjct: 529 GGRRTRMNNPKLVDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGV 582

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            PLRGK+LNV  A F+++  +QEI  +   LG    ++  D   LRY  ++IMTD D DG
Sbjct: 583 FPLRGKLLNVRDASFEQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDG 642

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGI-----TRGKSLQYVKDEESLEDYLI 564
           +HI+ LL+ F   Q PSL+      I    P+  +           +        E +  
Sbjct: 643 SHIKGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWKE 702

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
                                      D  +    L +     H     E  +I   F+ 
Sbjct: 703 EHK-----HERGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDHETELIELAFSK 757

Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           +   E       +            + ++   IN   IL            V++G
Sbjct: 758 KKADER-KEWLRQFKPGTFLDHSVEKITYTDFINKELILFSMADNQRSIPSVVDG 811


>gi|51571597|emb|CAH18965.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 210/395 (53%), Positives = 281/395 (71%), Gaps = 3/395 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+RI+R G +YE S+  G+ +      G+     GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVPNGQPQEVGTTDKV-GT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    ++GGI +
Sbjct: 60  MIHFKPDSQVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFEGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVFIKTEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+ +LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLATFLEENPPLAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            EI TLITALGTGI  + +D  K RYH+II+MTDA
Sbjct: 358 AEIVTLITALGTGIVAEDYDPEKARYHRIILMTDA 392


>gi|254390879|ref|ZP_05006090.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
 gi|294816152|ref|ZP_06774795.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
 gi|326444485|ref|ZP_08219219.1| putative DNA gyrase B subunit [Streptomyces clavuligerus ATCC
           27064]
 gi|197704577|gb|EDY50389.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
 gi|294328751|gb|EFG10394.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
          Length = 643

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 147/438 (33%), Positives = 234/438 (53%), Gaps = 12/438 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            + Y A++I +  GL+AV++ PSMY+G T G  G HH++ E++DNA+DE+  G+   I+V
Sbjct: 2   TTDYTAEAITVHSGLEAVRRNPSMYVGST-GPDGAHHLVLELVDNAVDEAAAGHCGAISV 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  DGSC+V+D+GRGIPTD H   G+ A E+++T LH+GGKF+  SY  S GLHGVG++
Sbjct: 61  ELYDDGSCSVTDDGRGIPTDPHPAAGVPACELVLTTLHSGGKFDDSSYATSAGLHGVGLA 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            VNALS WL+L + R+G  +  SF  G ++ PL   G + +  G+ V F P  +IFS   
Sbjct: 121 CVNALSEWLRLDVWRDGAHHSESFARGSVETPLKRVGDS-DRRGSRVWFRPDPEIFSSCL 179

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
            + D +  RL ++++L+  +++ L D R+   R  ++    G+   ++Y     + +   
Sbjct: 180 LDTDLVHARLLDIAYLHPGLRVELTDHRTG--RHESLCETTGVRGLLAYRAHDAEKVHAE 237

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P  I  + D   ID A++W +GY E +  + N +    GG+H+  LR AL   +      
Sbjct: 238 PTTIAWAGDGCVIDAAVQWTEGYAEQIFSYVNTVRTDLGGSHVDALRRALAGVVAD---- 293

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                     +   D  EG T+V++I+ PD RF  QTK  L + +  + V   V +    
Sbjct: 294 --HLGPSADRMTVVDILEGLTAVIAIRTPDARFDGQTKRTLRNDDAGARVFDVVTEQARR 351

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLADCSERDPKK 424
            L   P  A+ I ++ +DAS  R AAR A     +R + V    ++  +      +D   
Sbjct: 352 ALAADPELARRIAERAIDASRARLAARLAGRTARSRTRAVEVDYAVYQRQFGIRSKDWHD 411

Query: 425 SELFLVEGDSAGGSAKQG 442
           S  +L + D  G  A+  
Sbjct: 412 SCAWLTDEDLLGKHAELC 429


>gi|41387070|gb|AAS01489.1| GyrB [Bacillus sp. 83-3C]
 gi|41387072|gb|AAS01490.1| GyrB [Bacillus sp. 83-5C]
          Length = 387

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 188/390 (48%), Positives = 272/390 (69%), Gaps = 4/390 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ + R+G I+   +  GI    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF     + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI
Sbjct: 60  TITRFKPDPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+P+ + P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH 
Sbjct: 119 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  K+   K    ++ G+D REG T+++SIK P+P+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ES  ++    +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SE+++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           S+ E+ T+ITA+GT IG D FDI K RYHK
Sbjct: 359 SNDEVRTIITAIGTNIGGD-FDIEKARYHK 387


>gi|323710210|gb|ADY03039.1| DNA gyrase B [Escherichia coli]
          Length = 264

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 145/266 (54%), Positives = 189/266 (71%), Gaps = 4/266 (1%)

Query: 47  EVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           EV+DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAG
Sbjct: 1   EVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 60

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG   
Sbjct: 61  GKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE 120

Query: 167 NDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y
Sbjct: 121 -KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHY 177

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DG
Sbjct: 178 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDG 237

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSK 311
           GTHL+G R+A+TR + +Y++K   SK
Sbjct: 238 GTHLAGFRAAMTRTLNAYMDKEGYSK 263


>gi|33146002|emb|CAD57642.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 375

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 228/377 (60%), Positives = 291/377 (77%), Gaps = 3/377 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GG
Sbjct: 60  TGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           I+AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG 
Sbjct: 119 IQAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGA 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KL
Sbjct: 179 HLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+
Sbjct: 239 VSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDL 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 AGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 358

Query: 468 MLSSQEIGTLITALGTG 484
           MLSSQE+ TLITALG G
Sbjct: 359 MLSSQEVATLITALGCG 375


>gi|145309477|dbj|BAF56640.1| DNA gyrase subunit B [Alicyclobacillus vulcanalis]
          Length = 389

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 198/393 (50%), Positives = 275/393 (69%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVG SVVNALSSW+++ + R+G+IY   +  G     L + G   + TG
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSSWMRVEVHRDGHIYVQEYERGTPLYDLKIIG-TTDKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ DTL +RLREL+FLN+ ++I   D+R    R +   Y GG+
Sbjct: 60  TKVSFKPDPEIFTETTVFSADTLINRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K+ L   PI +   +D++++++A+++NDGY   V  F NNI   +GGTH 
Sbjct: 119 AEFVRWLNQSKEVLFDDPIYVSALKDDVAVEIALQYNDGYAATVYSFANNINTAEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRYGMLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE+   + +  +LEE+P  A+ IV K + A+  R+AARRAR+LTR K  +D+ S
Sbjct: 239 SEVRGIVETLFGERMQIFLEENPSVARKIVDKCILAARAREAARRARELTRSK-KMDVTS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +++EI  +ITA GTGIG D FD++K RY KI+I
Sbjct: 358 ANEEIRAIITACGTGIG-DDFDLSKARYQKIVI 389


>gi|328349759|emb|CBY89187.1| GyrB protein [Flavobacterium sp. R-41499]
          Length = 397

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 180/391 (46%), Positives = 253/391 (64%), Gaps = 6/391 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T++ AGGKF++ SYKVSGGLHGVGVSVVNALS  +K  + R+G IYE  +  G    P+ 
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSVHMKSTVFRDGKIYEQEYERGKAIYPVK 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS---- 215
             G   +  GT  TF P   IF+    F+YDTL  R+RELSFLN  + I+  DKR     
Sbjct: 61  QVGET-DKRGTRQTFYPDDTIFTQTIEFSYDTLSARMRELSFLNKGITITFTDKREVDEK 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            E +        G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  
Sbjct: 120 GEFKVEVFHSDEGLKEYIRYLDGNREPIISHVISMDHEKGEIPVEVALIYNTSYTENIFS 179

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNI   +GGTHL G RS LTR +  Y + S    K K  + GDD REG T+++S+K+ 
Sbjct: 180 YVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVA 239

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL + EV S V   V + L  +LEE+P +A+II++KV+ A+  R AA++A
Sbjct: 240 EPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPNDARIIIQKVILAAQARHAAKKA 299

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++ +RK V+    LPGKL+DCSE+DP + E++LVEGDSAGG+AKQGR R  QAILPLRG
Sbjct: 300 REMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGGTAKQGRDRAFQAILPLRG 359

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIG 486
           KILNVE+A   K+  ++EI  + TALG  +G
Sbjct: 360 KILNVEKAMHHKVFENEEIRNIFTALGVTVG 390


>gi|6644318|gb|AAF21003.1|AF208252_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 387

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 232/390 (59%), Positives = 294/390 (75%), Gaps = 3/390 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           LITALG GIG+D ++ +KLR  +    TDA
Sbjct: 358 LITALGCGIGRDEYNPDKLRLSQHHHHTDA 387


>gi|35210333|dbj|BAC92678.1| gyrase B subunit [Alicyclobacillus sp. MIH 332]
 gi|145309471|dbj|BAF56638.1| DNA gyrase subunit B [Alicyclobacillus sp. IAM 14934]
          Length = 389

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 199/393 (50%), Positives = 274/393 (69%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K YKVSGGLHGVG SVVNALS W+++ + R+G+IY   +  G     L V G   + TG
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSLWMRVEVHRDGHIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V+F P  +IF+    F+ +TL +RLREL+FLN+ ++I   D+R    R +   Y GG+
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGV 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L++ K  L   PI +   +D++++++A+++NDGY   V  F NNI   +GGTH 
Sbjct: 119 AEFVRWLNQSKDVLFDDPIYVSAVKDDVAVEIALQYNDGYTATVYSFANNINTAEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  +    K +  S+ GDD REG T+V+S+K+P+P+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VE+   + +  +LEE+P  A+ IV K + A+  R+AARRAR+LTR K  +D+ S
Sbjct: 239 SEVRGIVETLFAERMQMFLEENPAIARKIVDKCILAARAREAARRARELTRSK-KMDVTS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKL DCS +DP++SELFLVEGDSAGGSAK GR  + QAILPLRGKI+NVE+AR DK+L
Sbjct: 298 LPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +++EI  +ITA GTGIG D FDI+K RYHKI+I
Sbjct: 358 ANEEIRAIITACGTGIG-DDFDISKARYHKIVI 389


>gi|302746260|gb|ADL62720.1| GyrB [Morganella morganii subsp. morganii]
          Length = 386

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 232/389 (59%), Positives = 295/389 (75%), Gaps = 4/389 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVN LS  L+L I+R+G ++E  + +G   + L V G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTGTRVRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS D F    +F YD L  RLRELSFLNS V I LIDKR  +       Y+GGI+AFV 
Sbjct: 60  WPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL R K  +  +       +D+I ++++M+WND + ENV CFTNNIPQ+DGG HL+G R+
Sbjct: 118 YLSRAKTSIHNNVFYFSTEKDDIGVEISMQWNDSFQENVYCFTNNIPQRDGGAHLAGFRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY+EK   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYIEKEALNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ LS +L+E+P + KIIV K++DA+  R+AARRAR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+
Sbjct: 298 ADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIM 503
            TLITALG GIG+D ++ +KLRYH IIIM
Sbjct: 358 ATLITALGCGIGRDEYNPDKLRYHSIIIM 386


>gi|197092375|gb|ACE74724.2| DNA gyrase subunit B [Paenibacillus polymyxa]
          Length = 399

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 204/387 (52%), Positives = 279/387 (72%), Gaps = 5/387 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALSS + + +KR+G++YE  +  G     + V G    +TGT+ TF P  
Sbjct: 17  LHGVGVSVVNALSSKMIVHVKRDGHVYEQEYHRGAPQYDVRVIGDTE-ETGTQTTFYPDE 75

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            IF+    ++YDTLQ R+REL+FLN  + ISL D+R+      T  Y+GGI  +V +L++
Sbjct: 76  QIFTETTVYDYDTLQTRIRELAFLNKGIAISLTDERTG--ASDTFHYEGGISEYVQFLNQ 133

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI ++GSRD I +++A+++ND Y EN+  F NNI   +GGTH SG +SALTR
Sbjct: 134 KREALHEQPIYVEGSRDTIQVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTR 193

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K+   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +SEVR +VES
Sbjct: 194 IINDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVES 253

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + L  +LEE+P  ++ +V K L A+  R+AAR+AR+LTRRK  L+I+SLPGKLADCS
Sbjct: 254 LFAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCS 313

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +D   SEL++VEGDSAGGSAKQGR R  QAILP+RGKILNVE+AR D++LSS EI +++
Sbjct: 314 SKDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMV 373

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTD 505
           TA+GTGIG D FDI+K RYHK+IIMTD
Sbjct: 374 TAMGTGIG-DDFDISKARYHKVIIMTD 399


>gi|6644316|gb|AAF21001.1|AF208250_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 387

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 232/390 (59%), Positives = 294/390 (75%), Gaps = 3/390 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           LITALG GIG+D ++ +KLR  +    TDA
Sbjct: 358 LITALGCGIGRDEYNPDKLRVSQHHHHTDA 387


>gi|285804188|gb|ADC35602.1| DNA gyrase subunit B [Geobacillus thermocatenulatus]
          Length = 394

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 196/386 (50%), Positives = 269/386 (69%), Gaps = 4/386 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS WL++ + R+G I+   +  G     L V G   + TGT   F P  
Sbjct: 12  LHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPSTDLQVIGET-DRTGTTTRFKPDP 70

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    F+Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V +L+R
Sbjct: 71  EIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE-YIYEGGIRSYVRHLNR 129

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG + ALTR
Sbjct: 130 TREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTR 189

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K++  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++
Sbjct: 190 IINDYARKQQIFKENDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDA 249

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P  A+ IV+K + A+  R AA++AR+LTRRK  LDI++LPGKLADCS
Sbjct: 250 VFSEQFEMFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALDISNLPGKLADCS 309

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +I
Sbjct: 310 SRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAII 369

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMT 504
           TALGTGIG++ FDI+K RYHK+IIMT
Sbjct: 370 TALGTGIGEE-FDISKARYHKVIIMT 394


>gi|126035234|gb|ABN72370.1| gyrase B subunit [Escherichia coli]
          Length = 381

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 229/384 (59%), Positives = 294/384 (76%), Gaps = 4/384 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFW 59

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV Y
Sbjct: 60  PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 118 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLA
Sbjct: 238 VEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRYHK 499
           TLITALG GIG+D ++ +KLRYH 
Sbjct: 358 TLITALGCGIGRDEYNPDKLRYHN 381


>gi|19909567|dbj|BAB86979.1| DNA gyrase subunit B [Brevundimonas vesicularis]
          Length = 397

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 255/397 (64%), Positives = 310/397 (78%), Gaps = 7/397 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND---- 168
           SYKVSGGLHGVGVSVVNALS WL+L+I R+G  +EM F  G     L VTG A       
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLELKIYRDGKAHEMRFERGDTVKSLEVTGDAPIREDTG 60

Query: 169 ---TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              +GTEVTF PS   FS  DF+  TL+HRLREL+FLNS V I L D+R  EP E+ + Y
Sbjct: 61  KPLSGTEVTFFPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLADQRHAEPVEMILHY 120

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+EAFV +LD+ K P+++  I I+G ++ I +DLA+ WND YHE +LCFTNNIPQ+DG
Sbjct: 121 EGGVEAFVRHLDKSKTPILKDVIVIRGKKEGIELDLALWWNDSYHETMLCFTNNIPQRDG 180

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHLS  R++LTR +  Y+E S   KK+K SV G+D REG T VLS+K+PDP+FSSQTK+
Sbjct: 181 GTHLSAFRASLTRVMGGYIESSGAGKKEKVSVTGEDAREGLTCVLSVKVPDPKFSSQTKD 240

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR  VES  ++GL+ W EEHP+EAK IV K+++A+  R+AAR+ARDLTRRK  L
Sbjct: 241 KLVSSEVRPAVESLCSEGLATWFEEHPVEAKQIVAKIIEAASAREAARKARDLTRRKSAL 300

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +I+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERARF
Sbjct: 301 EISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARF 360

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D+MLSS  IGTLI ALGTGIG+D F+ +KLRYHKII+
Sbjct: 361 DRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 397


>gi|4996796|dbj|BAA78443.1| subunit B protein of DNA gyrase [bacterium rM4]
          Length = 323

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 162/327 (49%), Positives = 218/327 (66%), Gaps = 32/327 (9%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLH 88
           DT   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V+DNGRGIPT     D H
Sbjct: 1   DTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKH 60

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
            E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G ++++
Sbjct: 61  -EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGKVHQI 119

Query: 149 SFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHR 195
            F  G +             +P+ VTG A +  GTEV FLP ++IF    DF+Y+ L  R
Sbjct: 120 EFARGFVQNRLLETVDGFEVSPMKVTG-ASDRRGTEVHFLPDTEIFKENHDFHYEILAKR 178

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLN+ V+I LID+RS +         GG+  FV +++ +K+ L  +     G+R 
Sbjct: 179 LRELSFLNNGVRIRLIDERSGKE--DDFSGAGGVMGFVKFINANKRVLHPTAFHASGTRP 236

Query: 256 ----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                      I +++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E
Sbjct: 237 AESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSI 332
           ++  +KK K  V GDD REG   VLS+
Sbjct: 297 QNELAKKAKVEVTGDDMREGLCCVLSV 323


>gi|159146572|gb|ABW90730.1| DNA gyrase beta subunit [Photobacterium damselae]
          Length = 378

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 222/380 (58%), Positives = 291/380 (76%), Gaps = 3/380 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  ++L I R G+I+   + +G+   PL V G   + TGT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTTIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PSS+ F+   F Y+ L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV +L
Sbjct: 60  PSSETFTNTTFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKQDHFMYEGGIQAFVEHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ Q        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R A
Sbjct: 119 NRNKTPIHQKVFHFNVEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y+EK   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 LTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES + + L  +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 239 VESTMGEKLGEFLLENPSDAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 299 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 358

Query: 476 TLITALGTGIGQDSFDINKL 495
           TLITA+G GIG+D ++ +KL
Sbjct: 359 TLITAMGCGIGRDEYNPDKL 378


>gi|126035278|gb|ABN72392.1| gyrase B subunit [Salmonella enterica]
          Length = 379

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 228/382 (59%), Positives = 294/382 (76%), Gaps = 4/382 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFW 59

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV Y
Sbjct: 60  PSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 118 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLA
Sbjct: 238 VEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRY 497
           TLITALG GIG+D ++ +KLRY
Sbjct: 358 TLITALGCGIGRDEYNPDKLRY 379


>gi|308153062|dbj|BAJ22120.1| DNA gyrase subunit B [Bacillus azotoformans]
          Length = 379

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 191/380 (50%), Positives = 261/380 (68%), Gaps = 3/380 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++ +  +G I+ + F  G +   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHLDGKIHYIKFERGAVVEELKVIGET-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF     + YD L  RLREL+FLN  + + + DKR  E +     Y+GGI
Sbjct: 60  TIVHFSPDPEIFQETTVYEYDVLATRLRELAFLNRGLNLIIEDKRP-EGKTQHWCYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+R ++ + + P+ + G +D I+ ++A+++ND Y  N+  F NNI   +GGTH 
Sbjct: 119 ISYVEHLNRSREVIHEEPVYVMGEKDGITAEVALQYNDSYVSNIYSFANNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G ++ALTR I  Y  KS   K++  ++ GDD REG T+++S+K PDP+F  QTK KL +
Sbjct: 179 VGFKTALTRVINDYARKSGMFKENDPNLTGDDVREGLTTIISVKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR++V+S  ++ L  +L E+P   K IV+K L AS  R AA++AR+LTRRKG L+I+S
Sbjct: 239 SEVRAIVDSVFSEQLDKFLMENPSVGKKIVEKGLMASRARIAAKKARELTRRKGALEISS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 299 LPGKLADCSSKDASISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRIL 358

Query: 470 SSQEIGTLITALGTGIGQDS 489
           S+ EI T+ITALGTGIG+D 
Sbjct: 359 SNNEIRTIITALGTGIGEDF 378


>gi|253317615|gb|ACT22745.1| gyrase subunit B [Aeromonas sobria]
          Length = 392

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 229/382 (59%), Positives = 291/382 (76%), Gaps = 3/382 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV 
Sbjct: 6   QVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVR 64

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS  IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV 
Sbjct: 65  FWPSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVE 122

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+
Sbjct: 123 YLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRT 182

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 183 ALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKT 242

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKL
Sbjct: 243 AVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKL 302

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 303 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 362

Query: 475 GTLITALGTGIGQDSFDINKLR 496
           GTLITALG GIG+D ++ +KLR
Sbjct: 363 GTLITALGCGIGRDEYNPDKLR 384


>gi|157073807|dbj|BAF79902.1| gyrase B [Methylobacterium suomiense]
          Length = 399

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 248/399 (62%), Positives = 304/399 (76%), Gaps = 7/399 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALS  LKLRI R G  + M F +G    PL V G AG+  G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTF PS + F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+E
Sbjct: 61  TEVTFTPSPETFTMVEFDYPTLEKRLRELAFLNSGVRIVLTDARHAEHKREELCYEGGVE 120

Query: 231 AFVSYLDRHKK--PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV YLDR +K    M  P+ + G RD I +++A  WND ++E VL FTNNIPQ+DGGTH
Sbjct: 121 AFVRYLDRSRKSVEGMAKPVTVLGERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ALTRQIT Y E S  +KK+K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLV
Sbjct: 181 MAGFRAALTRQITGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE+ +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+AR+   RKG LDIA
Sbjct: 241 SSEVRPAVENILNEGLSTWLEENPSQARSVMAKVVLAAAAREAARKARETITRKGALDIA 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADC ERDP K EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+M
Sbjct: 301 SLPGKLADCQERDPTKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 360

Query: 469 LSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIII 502
           LSS EIGTLITALG GIG+ S     F+ +KLRYH+III
Sbjct: 361 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|19909629|dbj|BAB87010.1| DNA gyrase subunit B [Rhodoblastus acidophilus]
 gi|19909697|dbj|BAB87044.1| DNA gyrase subunit B [bacterium MBIC3366]
          Length = 397

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 259/397 (65%), Positives = 315/397 (79%), Gaps = 5/397 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG---- 166
           Q SYKVSGGLHGVGVSVVNALSS L LRI REG  +E+ F +G    PL V G A     
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSKLSLRIWREGLEHEVDFAHGDAVAPLKVVGEAPLEEG 60

Query: 167 -NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT VTFLPS + FS  +F+Y T++HRLREL+FLNS V+I L D R  E +   + Y
Sbjct: 61  KPKRGTSVTFLPSLETFSAIEFDYATIEHRLRELAFLNSGVRIVLSDSRHAERKVEILHY 120

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+EAFV YLDR K PL+  PI+++G RD I+++ A+ WND YHENVL FTNNIPQ+DG
Sbjct: 121 EGGLEAFVRYLDRTKSPLISKPIQMRGERDGITVEAALWWNDSYHENVLVFTNNIPQRDG 180

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTRQ+T Y E S  +K++K  + G+DCREG T V+S+K+PDP+FSSQTK+
Sbjct: 181 GTHLAGFRAALTRQVTGYAEHSGLTKREKVDLTGEDCREGLTCVVSVKVPDPKFSSQTKD 240

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR VVE  +N+ L  WLEE P EAK +V KV++A+  R+AAR+AR+LTRRKG L
Sbjct: 241 KLVSSEVRPVVEGVINETLGQWLEESPSEAKTVVGKVVEAASAREAARKARELTRRKGAL 300

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           D+A+LPGKLADC ERDP K+ELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARF
Sbjct: 301 DVANLPGKLADCQERDPAKAELFIVEGDSAGGSAKQGRNREYQAVLPLRGKILNVERARF 360

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           DKMLSS++IGTLITALG GIG D F+I+KLRYHKII+
Sbjct: 361 DKMLSSEQIGTLITALGAGIGHDEFNIDKLRYHKIIV 397


>gi|332800607|emb|CBY89793.1| GyrB protein [Flavobacterium swingsii]
          Length = 402

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 182/395 (46%), Positives = 256/395 (64%), Gaps = 7/395 (1%)

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILD 156
           V+MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G +YE  +  G   
Sbjct: 2   VVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKAL 61

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            P+   G      GT VTF P   IF+   +++YDTL  R+RELSFLN  + I+  DKR 
Sbjct: 62  YPVKQIGETT-KRGTIVTFYPDETIFTQSTEYSYDTLSARMRELSFLNKGITITFTDKRE 120

Query: 216 ----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
                           G++ ++ YLD +++P++   I +   + +I +++A+ +N  Y E
Sbjct: 121 LDKEGNFVSEVFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKSDIPVEVALIYNTSYTE 180

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           N+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S
Sbjct: 181 NIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFEISGDDFREGLTAIIS 240

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R A
Sbjct: 241 VKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHA 300

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           A++AR++ +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAIL
Sbjct: 301 AKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAIL 360

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           PLRGKILNVE+A   K+  ++EI  + TALG  IG
Sbjct: 361 PLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIG 395


>gi|38224440|gb|AAR14138.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp.
           funduliforme]
          Length = 402

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 179/402 (44%), Positives = 262/402 (65%), Gaps = 3/402 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGND 168
             +YKVSGGLHGVG+SVVNALS W ++++KREGN+Y   ++ G     + +     AG  
Sbjct: 2   NDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPIEDVKIISALEAGET 61

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  +IF    F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +  ++GG
Sbjct: 62  TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGG 121

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  F+  + +  + L+   I I+G  + + +D+A  +  G  E +  F NNI   +GG+H
Sbjct: 122 ISDFLKEVTQENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEIIYSFVNNINTTEGGSH 181

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ LT+ I  + +     K+ + +                + P P+F  QTK KL 
Sbjct: 182 VTGFRTCLTKVIIDFGKNPGFLKEKEENSKRRHSGRNCCYYFG-QSPHPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEV  +V + ++  L  +LE++P + K+I++K+L++   R+AA+RAR+   RK VL++ 
Sbjct: 241 NSEVSGIVNTVLSTDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEVG 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADCS + P++ E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K 
Sbjct: 301 SLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKA 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           L S EI  ++TA GT IG++SFD+ KLRY KII+MTDADVDG
Sbjct: 361 LESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 402


>gi|126035280|gb|ABN72393.1| gyrase B subunit [Salmonella enterica]
          Length = 380

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 228/382 (59%), Positives = 294/382 (76%), Gaps = 4/382 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWP 59

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL
Sbjct: 60  SHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+
Sbjct: 118 NKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 178 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLAD
Sbjct: 238 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTGIGQDSFDINKLRYH 498
           LITALG GIG+D ++ +KLRYH
Sbjct: 358 LITALGCGIGRDEYNPDKLRYH 379


>gi|3985986|dbj|BAA34869.1| DNA gyrase subunit B protein [Nitrosomonas sp. GH22]
          Length = 389

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 239/392 (60%), Positives = 302/392 (77%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS WL+L I R+GN++++ F +G+   PL VTG   +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV FL S  IF    ++YD    RLRELSFLN  ++I L+D+R  + RE T  + GGI 
Sbjct: 60  TEVHFLASQAIFGNVTYHYDIFARRLRELSFLNYGIRIRLVDQR--DNREETFAFSGGIR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++R K  L  S    +G +D+I++++AM+WND Y E VLCFTNNIPQKDGGTHL+
Sbjct: 118 NFVEYINRTKTVLHPSIFYAKGMKDDITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLT 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR + SY+EK+  +KK K    GDD REG T VLSIK+ +P+FSSQTKEKLVSS
Sbjct: 178 GLRAAMTRTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVE  V+  LS ++ E+P EAKII  K+++A+  R+AAR+AR+LTRRKGVLD   L
Sbjct: 238 EVRPVVEEVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRRKGVLDSMGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DPK  EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++S
Sbjct: 298 PGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEI +LITALGTGIG+D ++ +KLRYH+III
Sbjct: 358 SQEIVSLITALGTGIGKDEYNPDKLRYHRIII 389


>gi|70992793|ref|XP_751245.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|66848878|gb|EAL89207.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|159130301|gb|EDP55414.1| DNA topoisomerase II [Aspergillus fumigatus A1163]
          Length = 1660

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 153/710 (21%), Positives = 264/710 (37%), Gaps = 49/710 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------G 40
           D    S+  ++  Q L  L+ + KRP  YIG  +  +                      G
Sbjct: 46  DQPATSTNASEKYQKLTQLEHIIKRPDTYIGSVERTTQFMWVYDSETEGMKYKEVSYVPG 105

Query: 41  LHHMIYEVLDNAIDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
           L+ +  E++ NA D     +     D I VT++ + G  +V +NGRGIP ++H +EGI  
Sbjct: 106 LYKIFDEIVVNAADNKQNDANM---DEIRVTIDRESGEISVWNNGRGIPIEIHAKEGIYV 162

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+   +  +  R+   Y+ ++ N 
Sbjct: 163 PELIFGHLLTSSNYDDTQKKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTNN 222

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +          A  +  T+VTF P    F ++  + D      R +  L  + ++++   
Sbjct: 223 MSKMGKAKITDAKGEDYTKVTFKPDYAKFGMEGMDDDFEALVKRRVYDLAGTTKVAVKLN 282

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
            S  P      Y       +      +    +    I     +   ++    +DG    V
Sbjct: 283 GSRIPVRNFKKYMEMYTKAIRRERGEEDTNAKDE--IITCSPDPRWEIGFAVSDGSFHQV 340

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GGTH++ +   +  ++   V+K   +     ++     R      ++  
Sbjct: 341 -SFVNSIATTSGGTHVNYIADQICARLADQVKKKNKNG---ATLKPAQIRNHIFIFVNAL 396

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P F+SQTKE+L +   +   +  + +     +    +   I+      A  +     
Sbjct: 397 IVNPAFTSQTKEQLTTKSSQFGSKCVLEEDFYKKILRTEVMNNILHFAQAKADQLLKKTD 456

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAI 450
             R        L  A+  G       +D     L L EGDSA G A  GR+    +   +
Sbjct: 457 GGRRTRMNNPKLVDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGV 510

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            PLRGK+LNV  A F+++  +QEI  +   LG    ++  D   LRY  ++IMTD D DG
Sbjct: 511 FPLRGKLLNVRDASFEQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDG 570

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           +HI+ LL+ F   Q PSL+      I    P+  + +G      K               
Sbjct: 571 SHIKGLLINFLQAQFPSLLKIPEFLIEFITPIAKVWKGDPKNPTKQHSFFTMPEYEAWKE 630

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
           E                     D  +    L +     H     E  +I   F+ +   E
Sbjct: 631 EHKHERGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTLQDHETELIELAFSKKKADE 690

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                  +            + ++   IN   IL            V++G
Sbjct: 691 R-KEWLRQFKPGTFLDHSVDKITYTDFINKELILFSMADNQRSIPSVVDG 739


>gi|12644443|sp|Q44270|GYRB_ACIG3 RecName: Full=DNA gyrase subunit B
 gi|11270908|pir||T43899 DNA gyrase chain B [imported] - Acinetobacter sp. (fragment)
 gi|4514409|dbj|BAA75403.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 388

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 229/391 (58%), Positives = 286/391 (73%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L L I R G ++E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WN+ Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTADTENGIGVEVALQWNESYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG++ ++ +KLRYHKII
Sbjct: 358 SQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|13359140|dbj|BAB33301.1| DNA gyrase B subunit [Marinobacterium georgiense]
 gi|13359142|dbj|BAB33302.1| DNA gyrase B subunit [Marinobacterium georgiense]
          Length = 387

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 227/390 (58%), Positives = 295/390 (75%), Gaps = 3/390 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +YKVSGGLHGVGVSVVNALSS LKL I+R G ++E  + +G+ + PL V G   + TGT 
Sbjct: 1   TYKVSGGLHGVGVSVVNALSSELKLTIRRAGQVHEQIYHHGVPEVPLRVVGET-DLTGTI 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F PS + F+   F YD L  RLRELSFLNS V+I L D+RS   RE    Y+GG+ AF
Sbjct: 60  VRFKPSEETFTNISFQYDILAKRLRELSFLNSGVRIRLKDERSG--REEVFEYEGGLAAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+++K P+ +         + + +++AM+WNDG+ E + CF NNIPQ+DGGTHLSG 
Sbjct: 118 VEFLNQNKSPINKIFHFNTMHENGVGVEVAMQWNDGFQEGLHCFANNIPQRDGGTHLSGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR + SY+E    +K  K S  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAALTRCLNSYIESEQLNKNGKVSTSGDDSREGLVAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +   L+A+L E+P +AK +V+K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 238 KTAVEQLMASELNAYLLENPQDAKAVVQKMIDAARAREAARKAREMTRRKGALDVAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKML+S 
Sbjct: 298 KLADCQEKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLTSA 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+GTLITALG GIG++ F+ +KLRYH III
Sbjct: 358 EVGTLITALGCGIGREEFNADKLRYHSIII 387


>gi|328349743|emb|CBY89179.1| GyrB protein [Flavobacterium sp. R-38352]
          Length = 404

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 182/394 (46%), Positives = 256/394 (64%), Gaps = 7/394 (1%)

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDN 157
           +MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G +YE  +  G    
Sbjct: 1   VMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKALY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           P+   G      GT VTF P + IF+    F+YDTL  R+RELS+LN  + I+  DKR  
Sbjct: 61  PVKQIGETT-KRGTIVTFYPDNTIFTQTTEFSYDTLSARMRELSYLNKGITITFTDKREK 119

Query: 217 EPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +              G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN
Sbjct: 120 DKDGNFVSEVFHSTEGLKEYIRYLDSNREPIIAHVISMDSDKGEIPVEVALIYNTSYTEN 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  + NNI   +GGTHL G R+ LTR +  Y + S    K K  V GDD REG T+++S+
Sbjct: 180 IFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEVSGDDFREGLTAIISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL + EV S V   V D + ++LEE+P +A+IIV+KV+ A+  R AA
Sbjct: 240 KVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIESYLEENPNDARIIVQKVILAAQARHAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           ++AR++ +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILP
Sbjct: 300 KKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LRGKILNVE+A   K+  ++EI  + TALG  IG
Sbjct: 360 LRGKILNVEKAMHHKVFENEEIRNIFTALGVTIG 393


>gi|317420200|emb|CBW30257.1| gyrase B subunit [Pseudoalteromonas issachenkonii]
          Length = 388

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 232/390 (59%), Positives = 299/390 (76%), Gaps = 6/390 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL I+REG ++E  +  G+ D PL V G +    GTE+ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLKLTIRREGKLHEQFYTMGVPDAPLAVIGDSE-TNGTEIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI AFV YL
Sbjct: 60  PSGETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-EENKSDHFKYEGGIRAFVEYL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +R+K P+ +        R+   IS++++M+WND + EN+ CFTNNIPQ+DGGTHL+G RS
Sbjct: 119 NRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRS 178

Query: 295 ALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 179 ALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  + +  + +L E+PL+AKI+V K++DA+  R+AAR+AR+LTRRKG +D+A LPG
Sbjct: 239 KSAVEQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAARKARELTRRKGAMDLAGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP + EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 299 KLADCQEKDPAQXELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+ TLITALG GIG+D ++  KLRYH+III
Sbjct: 359 EVATLITALGCGIGRDEYNPEKLRYHRIII 388


>gi|145353138|ref|XP_001420882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581118|gb|ABO99175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1292

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 138/706 (19%), Positives = 261/706 (36%), Gaps = 74/706 (10%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGD----------------------TDGES 39
           ++  +N+    +  Q    L+ +  RP  Y+G                            
Sbjct: 19  TNKTKNNKSVEEIYQKKTQLEHILLRPDTYVGSCERAEEKAWVYDAATKSLTHKQVSFVP 78

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D  +       + V ++++ G   V ++G GIP ++HK+EG+   E
Sbjct: 79  GLYKIFDEILVNATDNKVRDPKMKELRVDIDVEQGLIRVYNDGNGIPVEMHKDEGVYVPE 138

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGI- 154
           +I   L     ++    KV GG +G G  + N  S+   +       G  Y   F N + 
Sbjct: 139 LIFGHLLTSSNYDDNEKKVVGGRNGYGAKLANIFSTEFIVETCDGSRGKRYRQVFKNNMS 198

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQIS 209
           +     ++    ++  T +TF P  + F ++    +       +        +  +  I 
Sbjct: 199 VKGEPELSKCKKSENWTCITFKPDFEKFGMESLVNEDVAALMCKRVYDAAGNIGKNTNIY 258

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L  ++             G   +VS     +    +        +     ++ +  +D  
Sbjct: 259 LNGEKLE---------VKGFSDYVSLYLDGQANAPKIF-----EKTMDRWEVCVTISDTA 304

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
                 F N I    GGTH++ +   +++++   ++K    +K  +++     +      
Sbjct: 305 QFQQCSFVNGICTMKGGTHVNSVADQISQKLLEKIQK---KEKSCKNLKAFQVKNHLWVF 361

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           ++  + +P F SQTKE L++   +       +D +   L E       +V  ++  +  +
Sbjct: 362 VNALIENPAFDSQTKETLITRPNKFGSAYAPSDAIIKKLMESG-----VVDNIMSWAQFK 416

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RE 446
            +    +    ++  L          D   R+ +   L L EGDSA   A  G S   R+
Sbjct: 417 QSKELKKTDGAKRSRLTGIPKLDDANDAGGRNSESCTLILTEGDSAKALAVSGLSVVGRD 476

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
              + PLRGK+LNV  A  +++ ++ EI  +   LG   G++      LRY K++IMTD 
Sbjct: 477 KYGVFPLRGKLLNVRDASHEQIKNNTEINHIKQILGLQHGKEYDSAKSLRYGKLMIMTDQ 536

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           D DG+HI+ LL+ F     PSL+   GFL     P+   T+GK  +        E +   
Sbjct: 537 DHDGSHIKGLLINFLHAHFPSLLKIPGFLLEFITPIIKATKGKQSKVFYTMPEYEAWKEA 596

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
              +    +        S          A +  +       +      +      + +  
Sbjct: 597 NDGTSGWSIKYYKGLGTS---------TANEAKEYFASLDHHRKSFVWQSDGDGDLIDMS 647

Query: 626 SDQEINVSLASKLANR-----LNFIAEKSEKSWHGSINNSDILVKR 666
             ++  V   + L        L+   E     +   IN   IL  R
Sbjct: 648 FSKKRVVDRKAWLTAYEPGTFLDMTGEDI--RYDEFINKELILFSR 691


>gi|19909571|dbj|BAB86981.1| DNA gyrase subunit B [Brevundimonas bacteroides]
          Length = 398

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 256/398 (64%), Positives = 310/398 (77%), Gaps = 6/398 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-- 168
           Q SYKVSGGLHGVGVSVVNALS WLKL I R G  +EM F  G     L VTG A     
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLKLVIFRNGKRHEMRFERGDTVESLRVTGDAPLRDD 60

Query: 169 ----TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               +GT+VTF PS   FS  DF+  TL+HRLREL+FLNS V I L D R  EP +I + 
Sbjct: 61  GRVLSGTQVTFYPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLQDHRGAEPVDILLH 120

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GG+EAFV +LD+ K P+++  I I+G +DNI IDLA+ WND YHE +LCFTNNIPQ+D
Sbjct: 121 YEGGVEAFVRHLDKSKTPILKDVIVIRGRKDNIEIDLALWWNDSYHETMLCFTNNIPQRD 180

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLS  R++LTR +++Y+E S   KK+K +  G+D REG T VLS+K+PDP+FSSQTK
Sbjct: 181 GGTHLSAFRASLTRVMSAYMESSGALKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQTK 240

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEVR  VE   ++GLS W EEHP+EAK +V K+++A+  R+AAR+ARDLTRRK  
Sbjct: 241 DKLVSSEVRPAVEGLCSEGLSQWFEEHPVEAKQVVAKIIEAASAREAARKARDLTRRKSA 300

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +DI+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERAR
Sbjct: 301 MDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERAR 360

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           FD+MLSS+ IGTLI ALGTGIG+D F+ +KLRYHKII+
Sbjct: 361 FDRMLSSELIGTLILALGTGIGRDDFNADKLRYHKIIL 398


>gi|258647743|ref|ZP_05735212.1| putative DNA topoisomerase IV, B subunit [Prevotella tannerae ATCC
           51259]
 gi|260852588|gb|EEX72457.1| putative DNA topoisomerase IV, B subunit [Prevotella tannerae ATCC
           51259]
          Length = 683

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 165/591 (27%), Positives = 269/591 (45%), Gaps = 82/591 (13%)

Query: 1   MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDN 51
           M++ ++ +     +YD   I+ L   + ++ RP MYIG     S    G++ ++ E +DN
Sbjct: 1   MAEELKQTMYKRGTYDESKIRHLDDTEHIRTRPGMYIGRLGDGSHAEDGIYVLLKESIDN 60

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           +IDE  EG+   I V+++ D + T+ D GRGIP         S  + + ++L+ G K++ 
Sbjct: 61  SIDEFNEGFGKRIEVSIDNDRAATIRDYGRGIPLG-------SLVDAV-SKLNTGAKYDT 112

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
             +  S GL+GVG+  VNALS    +R  REG ++E +F  G L            + GT
Sbjct: 113 SVFTASVGLNGVGLKAVNALSLKFVVRSYREGRMHEATFERGRLQEDHYE--DTHEEDGT 170

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            V F P  ++F    F  +T+   LR  ++LN+ + I L  +R           + G+E 
Sbjct: 171 YVYFEPDPELFLHFHFEDETVDTMLRNYTYLNTGLAIFLNGRRI--------ISRNGLED 222

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            ++       P +   I ++G     +ID+A      Y E    F N      GGTH S 
Sbjct: 223 LLNDNMTA--PGLYPIIHLKGD----NIDIAFTHTSQYGEEYYSFVNGQHTTLGGTHQSA 276

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +  + R I  +  K+             D R G  + +S+++ +P F SQTK KL S  
Sbjct: 277 FKEHIARTIKEHFGKN---------FDVQDVRNGLVAAISVRVIEPMFESQTKIKLGSLM 327

Query: 352 VRS------------------VVESFVNDGLSAWLEEHPLEAKIIVKKVLDA-------- 385
           +                     V  F+ + +  +L ++   A+++++K+ D+        
Sbjct: 328 MAPTKDKDGHPFPLSGVSVNKFVGDFIKEQVDNYLHKNLDTAEVMLQKIQDSERDRKAMA 387

Query: 386 -------SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
                     + A      L   +  L+ A   G   D   R    S LF+ EG+SA GS
Sbjct: 388 GVTKLARERAKKANLHNAKLRDCRIHLNEAPKKGYNKDNDPRF--DSSLFITEGNSASGS 445

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
             + R    QA+  LRGK LN      + +  ++E   L +AL    G     ++ LRY+
Sbjct: 446 ITKSRDANTQAVFSLRGKPLNCFGKTKEVVYKNEEFSLLQSALNIEDG-----LDGLRYN 500

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549
           K+I+ TDADVDG HIR L++TFF +  P LI  G +YI++ PL+ +     
Sbjct: 501 KVIVATDADVDGMHIRLLMITFFLQFFPELIKKGHVYILQTPLFRVRNKVK 551


>gi|269799068|gb|ACZ43812.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 342

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 193/344 (56%), Positives = 254/344 (73%), Gaps = 4/344 (1%)

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGVGVSVVN
Sbjct: 1   DDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 60

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L+L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS + F+   F+Y
Sbjct: 61  ALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTNTLFHY 119

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K P+ +    
Sbjct: 120 DILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTPINKDAFH 178

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK  
Sbjct: 179 FSAEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEG 238

Query: 309 GSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L+ +
Sbjct: 239 FLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLAEY 298

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           L E+P EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LP
Sbjct: 299 LLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLP 342


>gi|182411930|ref|YP_001816996.1| DNA topoisomerase IV subunit B [Opitutus terrae PB90-1]
 gi|177839144|gb|ACB73396.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Opitutus terrae PB90-1]
          Length = 629

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 166/672 (24%), Positives = 269/672 (40%), Gaps = 83/672 (12%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESL 57
           ++ I   +Y   SI+ L   + ++ RP MYIG          G++ ++ E +DN+IDE  
Sbjct: 14  ANAIMAQAYTEASIKTLSSTEHIRLRPGMYIGRLGNGAHAEDGIYVLLKESIDNSIDEFT 73

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I + L  D    V D GRGIP            E + + ++ G K++ +++K +
Sbjct: 74  MGYGRKIEIEL-QDRMVRVRDYGRGIPLGK-------VLECV-SIINTGAKYDSETFKKA 124

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
            GL+GVG   VNALS   + +  R+G    + F  G L              GT + F P
Sbjct: 125 VGLNGVGQKAVNALSFSYRAQAFRDGQTKLVEFAQGKLRKD-HKIAKTTERNGTLIEFTP 183

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
              +F     F  + ++  L   +FLN  + ++   K            + G++  +   
Sbjct: 184 DEALFGKDFKFRPEFIEDMLWNYAFLNRGLTLTFNGKA--------FRSENGLKDLLQKN 235

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
                  +   I ++G       ++A      Y E    F N      GGTHL+  R AL
Sbjct: 236 LSG--EPLYPIIHLEGEDM----EVAFTHGAHYGEEYYSFVNGQHTTMGGTHLAAFREAL 289

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-- 354
              + ++          KR     D R+   + +S+++ +P F SQTK KL S+++    
Sbjct: 290 VETVRNF---------FKRDYDAADVRQSIDAAVSVRVMEPVFESQTKTKLGSTDIAPGG 340

Query: 355 ---------VVES----------FVNDGLSAWLEEHPLEAKIIVKKVLDAS-MVRDAARR 394
                     V+              D L   +EE   E K +      A    + A+  
Sbjct: 341 PSIRDFIGKFVQQSLDGYLHKNRETADALRNKIEESERERKELAGIRSLARERAKKASLH 400

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
            R L   +  L   +             ++S LF+VEGDSA GS    R  + QA+  L+
Sbjct: 401 NRKLRDCRLHLGDRN----------ERAEESTLFIVEGDSAAGSLTATRDVQTQAVFALK 450

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK LN        +  ++E   L +AL          ++ LRY++++I TDADVDG HIR
Sbjct: 451 GKPLNTFGLSKKVIYENEEFHLLQSAL-----NVEDSMDGLRYNRVVIATDADVDGMHIR 505

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
            LL++FF +  P LI NG L+I++ PL+ +   K   Y   EE  +  +     S EI  
Sbjct: 506 LLLISFFLQFFPDLIRNGHLFILETPLFRVRNKKETIYCYSEEEKQAAMKKLGASHEITR 565

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           F     + +                      P       +   + G F  ++  E    +
Sbjct: 566 FKGLGEISAGE--------FKDFIGEAMRLEPVTLAHLNDSNELLGFFMGKNTPERQDFI 617

Query: 635 ASKLANRLNFIA 646
              L    + +A
Sbjct: 618 IDNLKVEKDLVA 629


>gi|11078703|dbj|BAB17356.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 389

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 220/392 (56%), Positives = 294/392 (75%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  L+L I+R   ++E  + +G+   PL   G   + +G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F PS + FS   F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++
Sbjct: 60  TEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K  + +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LD A 
Sbjct: 238 SEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDNAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+D   SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDHALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SSQE+GTLITALG GIG++ ++I+KLRYH II
Sbjct: 358 SSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|126035246|gb|ABN72376.1| gyrase B subunit [Enterobacter cloacae]
          Length = 381

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTMVRF 59

Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV 
Sbjct: 60  WPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+
Sbjct: 118 YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 178 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYH 498
            TLITALG GIG+D ++ +KLRYH
Sbjct: 358 ATLITALGCGIGRDEYNPDKLRYH 381


>gi|538664|pir||C49347 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) B chain -
           Caulobacter crescentus (fragment)
 gi|13592169|gb|AAC43046.2| DNA gyrase B subunit [Caulobacter crescentus CB15]
          Length = 203

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 115/187 (61%), Positives = 137/187 (73%), Gaps = 10/187 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     + Y ADSI++LKGLDAV+KRP MYIGDTD  SGLHHM+YEV+DNAIDE+L G+
Sbjct: 17  MTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 76

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V LN DGS TV+D+GRGIP D+H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGL
Sbjct: 77  ATKVQVILNADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 136

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND----------TG 170
           HGVGVS VNALS WL+L I R G +++M F  G     L VTG +             TG
Sbjct: 137 HGVGVSDVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTG 196

Query: 171 TEVTFLP 177
           TEVTF P
Sbjct: 197 TEVTFFP 203


>gi|115390190|ref|XP_001212600.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
 gi|114194996|gb|EAU36696.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
          Length = 1732

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 142/669 (21%), Positives = 255/669 (38%), Gaps = 46/669 (6%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S+N    +  ++  Q L  L+ + KRP  Y+G T+  +                      
Sbjct: 121 SNNQDKDTNVSEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVP 180

Query: 40  GLHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E++ NA D        D I VT++ + G  +V +NGRGIP ++H +E +   E
Sbjct: 181 GLYKIFDEIVVNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSKEKMYVPE 240

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGIL 155
           +I   L     ++    KV+GG +G G  + N  S+   +  +  R+   Y+ ++   + 
Sbjct: 241 LIFGHLLTSSNYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTENMT 300

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
                    A     T+VTF P    F +   + D      R +  L  + ++++    S
Sbjct: 301 KMGKAKITDAKGADYTKVTFKPDYAKFGMTGMDDDFEALVKRRVYDLAGTAKVAVKLNGS 360

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
             P      Y       +        P  ++   I     +   ++    +DG  + V  
Sbjct: 361 RIPIRNFKMYMEMYTKAIRRERGDMGPAGKNE--IITCSPDPRWEVGFAVSDGAFQQV-S 417

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F N+I    GGTH++ +   +  ++   V+K   +     ++     R      ++  + 
Sbjct: 418 FVNSIATTSGGTHVNYIADQICGKLAEQVKKKNKNG---ATLKPAQIRNHIFIFVNALIV 474

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P F+SQTKE+L + + +   +  + +     + +  +   I+      A  +       
Sbjct: 475 NPAFTSQTKEQLTTKQSQFGSKCVLEEDFYKKILKTEVMTNILHFAQQKADQMLKKTDGG 534

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILP 452
           R        L  A+  G       ++     L L EGDSA G A  GR+    +   + P
Sbjct: 535 RRSRMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFP 588

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGK+LNV  A FD++  +QEI  +   +G    ++  D   LRY  ++IMTD D DG+H
Sbjct: 589 LRGKLLNVRDASFDQIAKNQEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSH 648

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           I+ LL+ F   Q PSL+      I    P+  + +G      K+      +         
Sbjct: 649 IKGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGD----PKNPTKQRSFFTMPEYEAW 704

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
            E     +G   K                 +D   +  +    Q     +      ++  
Sbjct: 705 KEEHGHERGWEHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQDNEVELIELAFSKKKA 764

Query: 632 VSLASKLAN 640
                 L  
Sbjct: 765 DERKEWLRQ 773


>gi|297464683|ref|XP_001254710.3| PREDICTED: DNA topoisomerase II, beta isozyme [Bos taurus]
          Length = 1908

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 53  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 112

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 113 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 172

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 173 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 232

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 233 YTCITFQPDLSKFKMEKLDRDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 283

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 284 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 342

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 343 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 399

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 400 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 455

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 456 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 513

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 514 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 573

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 574 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 633

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 634 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 685

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 686 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 737

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 738 VDGFKPGQRKVLFTCFKRNDKREVK 762


>gi|90185710|emb|CAJ84449.2| gyrase B protein [Listonella anguillarum]
          Length = 382

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 221/384 (57%), Positives = 297/384 (77%), Gaps = 3/384 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + TGT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  E ++    Y+GGI+AFV +L
Sbjct: 60  PSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLLDER-EEDKKDHFRYEGGIKAFVGHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G R A
Sbjct: 119 NRNKTPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFRGA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 179 LTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKTA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES + + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 239 VESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 299 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 358

Query: 476 TLITALGTGIGQDSFDINKLRYHK 499
           TLITALG GIG+D ++ +KLRYH 
Sbjct: 359 TLITALGCGIGRDEYNPDKLRYHN 382


>gi|307939352|gb|ADN95867.1| DNA gyrase B [Hymenobacter psychrotolerans]
          Length = 423

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 198/425 (46%), Positives = 275/425 (64%), Gaps = 19/425 (4%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF++ SYK SGGLHGVGVS VNALS+   + +KREG+IYE  +  G+    +   G    
Sbjct: 1   KFDKNSYKTSGGLHGVGVSCVNALSTHTHVTVKREGHIYEQEYTIGVPQYDVRQIGDTT- 59

Query: 168 DTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPRE 220
           + GT V F P   IF    +++Y+ +  RLREL++LN  ++I L D R        EP+ 
Sbjct: 60  ERGTRVWFQPDPTIFDETLEYSYERIATRLRELAYLNRGIRIVLTDLRDAAVGTEGEPQR 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
              + +GG+  +V YLD  +  LM  P+ +   R  I +++A ++ND Y E++  + NNI
Sbjct: 120 TEFYSEGGVAEYVQYLDSSRTVLMTKPVYVATER-GIPVEVAFQYNDSYQEHIFSYVNNI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH++G RSA+TR +  Y EKS    K K  + GDD REG T+V+S+K+ +P+F 
Sbjct: 179 NTHEGGTHVAGFRSAITRVLKGYAEKSGEVAKAKVEIQGDDFREGLTAVISVKVAEPKFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SEV   V   V + L+ +LEE+P EA++IV+KV+ A+  R AA++AR++ +
Sbjct: 239 GQTKGKLGNSEVSGAVNQVVGEILNQYLEENPKEARVIVEKVILAAKARVAAKKAREMVQ 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK VL   SLPGKLADCSE DP   EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNV
Sbjct: 299 RKSVLGSNSLPGKLADCSESDPAICELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDI----------NKLRYHKIIIMTDADVDG 510
           E+A+  ++  ++EI  +ITALG    + + +           +KLRYHKIIIMT A V G
Sbjct: 359 EKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSSSRSLNLDKLRYHKIIIMTXAXVXG 418

Query: 511 AHIRT 515
           +HIRT
Sbjct: 419 SHIRT 423


>gi|115500952|dbj|BAF34146.1| B subunit gyrase [Pseudomonas nitroreducens]
          Length = 394

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 220/393 (55%), Positives = 293/393 (74%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVGVSVVNALS  L+L I+REG ++E  + +G+   PL   G     +G
Sbjct: 1   DNIYKVSGGLHGVGVSVVNALSHELRLTIRREGKVWEQVYHHGVPQFPLRPVGDTE-GSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F PS + F    F++D L  R+RELSFLNS   I L D+R+ +       Y+GG++
Sbjct: 60  TEVHFKPSPETFHNIHFSWDILAKRIRELSFLNSGEGIVLRDERTGKE--ELFKYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K  + Q      Q   + + + +A++WND +  N+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNCQLQENGVGVKVALQWNDSFKRNILCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRSALTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SSQE+GTLITALG GIG++ ++I+KLRYH ++I
Sbjct: 358 SSQEVGTLITALGCGIGREEYNIDKLRYHNMVI 390


>gi|198042676|gb|ACH81163.1| GyrB [Alteromonas sp. UST981101-024]
          Length = 376

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 226/379 (59%), Positives = 286/379 (75%), Gaps = 4/379 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS LKLRI+R G  +E  + +G+   PL VTG   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLKLRIRRAGKAHEQEYHHGVPQAPLAVTGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS+D F+   ++YD L  RLRELSFLNS V I L D+R  +       Y+GGI+
Sbjct: 60  TMIRFWPSADTFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERDGKE--DHFMYEGGIQ 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+  K P+ Q          D I++ +AM+WND + ENV C TNNI +++GGTHL
Sbjct: 118 AFVEYLNEKKTPVHQKVFHFASEQEDGIAVKVAMQWNDSFQENVFCLTNNILKREGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR  VES +N+ L+ +L E+P E+KII  K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 SEVRPAVESAMNEKLADFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQD 488
           SSQE+ TLITALG GIG+D
Sbjct: 358 SSQEVATLITALGCGIGRD 376


>gi|307947806|gb|ADN96143.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 386

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 229/389 (58%), Positives = 299/389 (76%), Gaps = 4/389 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHG+GVSVVNALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F 
Sbjct: 1   SGGLHGLGVSVVNALSXKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS D FS  +F+++ L  R+RELSFLNS V I LID+R  +       Y+GGI AFV YL
Sbjct: 60  PSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLIDERDNKN--EFFKYEGGISAFVDYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSA
Sbjct: 118 NRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY+E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLA
Sbjct: 238 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMT 504
           TLITALG GIG+D ++ +K RYH IIIMT
Sbjct: 358 TLITALGCGIGRDEYNPDKTRYHNIIIMT 386


>gi|2196796|gb|AAB80815.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 228/405 (56%), Positives = 300/405 (74%), Gaps = 4/405 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L    K    SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D
Sbjct: 1   EVIMTVLMRFKKSEANSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+   PS D  S  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRPWPSEDTSSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVDYLNRNKTPVNKDVSHFMQEREDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ ++ E+P + K+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYVLENPADVKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLAD  E+DP  SE+++VEGD A GSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADYQEKDPGLSEIYIVEGDYASGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           KILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RY K+
Sbjct: 358 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYQKV 402


>gi|317420212|emb|CBW30263.1| gyrase B subunit [Pseudoalteromonas marina]
          Length = 384

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 227/386 (58%), Positives = 297/386 (76%), Gaps = 6/386 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL V G +   TGTE+ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGDSE-TTGTELRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV Y+
Sbjct: 60  PSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIQAFVEYI 118

Query: 237 DRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +R+K P+ +        R    IS++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G RS
Sbjct: 119 NRNKTPIHKGVFHFTHERVEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRS 178

Query: 295 ALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ALTR + +++EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 179 ALTRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  + +  + +L E+P++AKI+V K++DAS  R+AAR+AR++TRRKG +D+A L G
Sbjct: 239 KSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLRG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 299 KLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYH 498
           E+ TLITALG GIG+D ++  KLRYH
Sbjct: 359 EVATLITALGCGIGRDEYNPEKLRYH 384


>gi|121308839|dbj|BAF43524.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1569

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 140/695 (20%), Positives = 265/695 (38%), Gaps = 50/695 (7%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLH 42
                  ++  Q L  L+ + KRP  YIG  +  +                      G  
Sbjct: 93  QNKKKSTSEMYQKLTQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFF 152

Query: 43  HMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
            ++ E+L NA D  +     D + VT++  +G+ +V +NGRGIP ++H +E +   E+I 
Sbjct: 153 KIVDEILVNAADNKINDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIF 212

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFINGILD-N 157
             L     ++    K++GG +G G  + N  S    +    +     Y+ ++ + +    
Sbjct: 213 GHLLTSTNYDDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCG 272

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLIDKR 214
              +T +   +  T +TF P    F +   + DT+   + R+ +++     V++ L D+R
Sbjct: 273 KAKITKNTRGEEYTRITFRPDLKRFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDER 332

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                              +  ++           I   + +   ++A   +       +
Sbjct: 333 LKIKNFKQYVEMYVSSVQEAAAEKSGGAAQPKQTVIH-EQISDRWEIAYTLSTEGTFQHV 391

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N+I    GGTH++ +   +++ + + + K         +V     R      +   +
Sbjct: 392 SFANSIATSKGGTHVNYIADQISKALVTSISKKN----KGATVKPAQIRNHMWLFVKSLI 447

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P F SQTKE L     +   +  ++D     + +       IV  VL+ +  +   + 
Sbjct: 448 VNPTFDSQTKELLTLPSSKFGSKPTISDEFIKKVAKSG-----IVDNVLNWAKFKADQQM 502

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAIL 451
            R    ++  L   +      +   R  +   L L EGDSA   A  G     R+N  + 
Sbjct: 503 KRADGTKRSRLLGLAKLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVF 562

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNV  AR D+++ ++EI  +   +G    +D  + + LRY +++IMTD D DG+
Sbjct: 563 PLRGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGS 622

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           HI+ L++ F     PSL+      +    P+  + +G  ++        E +     L E
Sbjct: 623 HIKGLIINFLDHFYPSLLKIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQW-----LEE 677

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
             +                  D      K+ K   P       ++ +I   F+ +   E 
Sbjct: 678 APDARKWESKYYKGLGTSEDKDAREYFSKMEKHMIPFAPTQEGDRELIDLAFSKKKADER 737

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
                 +            E  +   IN   IL  
Sbjct: 738 -KEWLRQFKPGTFLDHRLEEIPYSEFINKELILFS 771


>gi|253317617|gb|ACT22746.1| gyrase subunit B [Vibrio harveyi]
          Length = 395

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 223/383 (58%), Positives = 298/383 (77%), Gaps = 3/383 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ 
Sbjct: 6   QVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIR 64

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV 
Sbjct: 65  FWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVE 123

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 124 HLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 183

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 184 AALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 243

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 244 SAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 303

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 304 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 363

Query: 474 IGTLITALGTGIGQDSFDINKLR 496
           + TLITALG GIG+D ++ +KLR
Sbjct: 364 VATLITALGCGIGRDEYNPDKLR 386


>gi|332800595|emb|CBY89787.1| GyrB protein [Flavobacterium micromati]
          Length = 401

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 176/396 (44%), Positives = 256/396 (64%), Gaps = 7/396 (1%)

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDN 157
           +MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    
Sbjct: 1   VMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALY 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS- 215
           P+   G      GT VTF P   IF+   +++YDTL  R+RELS+LN  + ++  DKR  
Sbjct: 61  PVKQIGETT-KRGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSYLNKGITVTFTDKREL 119

Query: 216 ---PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                          G++ ++ YLD +++P++   I +   +  + +++A+ +N  Y EN
Sbjct: 120 DKDGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDNEKGEVPVEVALIYNTSYTEN 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           +  + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+
Sbjct: 180 IFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA
Sbjct: 240 KVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           ++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILP
Sbjct: 300 KKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILP 359

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 360 LRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTE 395


>gi|57898980|dbj|BAD86854.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1572

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 139/695 (20%), Positives = 274/695 (39%), Gaps = 50/695 (7%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLH 42
                  ++  Q L  L+ + KRP  YIG  +  +                      G  
Sbjct: 93  QNKKKSTSEMYQKLTQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFF 152

Query: 43  HMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
            ++ E+L NA D  +     D + VT++  +G+ +V +NGRGIP ++H +E +   E+I 
Sbjct: 153 KIVDEILVNAADNKINDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIF 212

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFINGILD-N 157
             L     ++    K++GG +G G  + N  S    +    +     Y+ ++ + +    
Sbjct: 213 GHLLTSTNYDDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCG 272

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLIDKR 214
              +T +   +  T +TF P    F +   + DT+   + R+ +++     V++ L D+R
Sbjct: 273 KAKITKNTRGEEYTRITFRPDLKRFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDER 332

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                              +  ++           I   + +   ++A   +       +
Sbjct: 333 LKIKNFKQYVEMYVSSVQEAAAEKSGGAAQPKQTVIH-EQISDRWEIAYTLSTEGTFQHV 391

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N+I    GGTH++ +   +++ + + + K         +V     R      +   +
Sbjct: 392 SFANSIATSKGGTHVNYIADQISKALVTSISKKN----KGATVKPAQIRNHMWLFVKSLI 447

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P F SQTKE L     +   +  ++D     + +       IV  VL+ +  +   + 
Sbjct: 448 VNPTFDSQTKELLTLPSSKFGSKPTISDEFIKKVAKSG-----IVDNVLNWAKFKADQQM 502

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAIL 451
            R    ++  L   +      +   R  +   L L EGDSA   A  G     R+N  + 
Sbjct: 503 KRADGTKRSRLLGLAKLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVF 562

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNV  AR D+++ ++EI  +   +G    +D  + + LRY +++IMTD D DG+
Sbjct: 563 PLRGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGS 622

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           HI+ L++ F     PSL+      +    P+  + +G  ++        E +L      +
Sbjct: 623 HIKGLIINFLDHFYPSLLKIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEETP--D 680

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
             +        +  ++ ++  +   K++K +  F P  +    ++ +I   F+ +   E 
Sbjct: 681 ARKWESKYYKGLGTSEDKDAREYFSKMEKHMIPFAPTQEG---DRELIDLAFSKKKADER 737

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
                 +            E  +   IN   IL  
Sbjct: 738 -KEWLRQFKPGTFLDHRLEEIPYSEFINKELILFS 771


>gi|33590336|gb|AAQ22708.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. luminescens]
          Length = 383

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 223/380 (58%), Positives = 292/380 (76%), Gaps = 4/380 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS D F +  +F +D L  RLRELSFLNS V I LIDKR+    E    Y+GGI+AFV 
Sbjct: 60  WPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRT--NIEDHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 FLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINK 494
            TLITALG GIG+D ++ +K
Sbjct: 358 ATLITALGCGIGRDEYNPDK 377


>gi|121700316|ref|XP_001268423.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
 gi|119396565|gb|EAW06997.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
          Length = 1735

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 149/713 (20%), Positives = 266/713 (37%), Gaps = 55/713 (7%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------G 40
           D    S+  ++  Q L  L+ + KRP  YIG  +  +                      G
Sbjct: 118 DEPAKSTNASEKYQKLTQLEHIIKRPDTYIGSVERTTQHMWVYSSTTEGMEYREVSYVPG 177

Query: 41  LHHMIYEVLDNAIDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
           L+ +  E++ NA D     +     D I VT++ + G  +V +NGRGIP ++H +EGI  
Sbjct: 178 LYKIFDEIVVNAADNKQNDAKM---DEIRVTVDRESGEISVWNNGRGIPIEIHSKEGIYV 234

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+   +  +  R+   Y+ ++ + 
Sbjct: 235 PELIFGHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTSN 294

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +          A  D  T+VTF P    F +   + D      R +  L  + ++++   
Sbjct: 295 MSKMGKAKITDAKGDDYTKVTFKPDYARFGMDGMDDDFEALVKRRVYDLAGTAKVAVKLN 354

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
            S  P      Y       +      +    +  I       +  +      +DG    V
Sbjct: 355 GSRVPIRNFKKYMEMYTKAIRRERGEEDAGAKDEIITCSPDPHWEV--GFTVSDGSFHQV 412

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GGTH++ +   +  ++   V+K   +     ++     R      ++  
Sbjct: 413 -SFVNSIATTSGGTHVNYIADQICVKLADQVKKKNKNG---ATLKPAQIRNHIFIFVNAL 468

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P F+SQTKE+L +   +   +  + +     + +  +   I+      A  +     
Sbjct: 469 IVNPAFTSQTKEQLTTKSSQFGSKCVLEEDFYKKILKTEVMNNILHFAQAKADQMLKKTD 528

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAI 450
             R        L  A+  G       +D     L L EGDSA G A  GR+    +   +
Sbjct: 529 GGRRTRMNNPKLVDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGV 582

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            PLRGK+LNV  A F+++  +QEI  +   +G    ++  D   LRY  ++IMTD D DG
Sbjct: 583 FPLRGKLLNVRDASFEQISKNQEIQNIKNFMGLQHKKEYIDTRGLRYGHLMIMTDQDHDG 642

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           +HI+ LL+ F   Q PSL+      I    P+  + +G      K+      +       
Sbjct: 643 SHIKGLLINFLQAQFPSLLKIPEFLIEFITPIIKVWKGD----PKNPTKQRSFFTMPEYE 698

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
              E     +G   K                 +D   +  +    Q   + +      ++
Sbjct: 699 AWKEQHGHERGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTLQDHETELIELAFSKK 758

Query: 630 IN---VSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                     +           ++ ++   IN   IL            V++G
Sbjct: 759 KADERKEWLRQFKPGTFLDHSVAKITYTDFINKELILFSMADNQRSIPSVIDG 811


>gi|113912339|gb|ABI48366.1| DNA gyrase subunit B [Pseudomonas fragi]
          Length = 392

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 226/388 (58%), Positives = 293/388 (75%), Gaps = 3/388 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ 
Sbjct: 1   KVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTQIH 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS   F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV 
Sbjct: 60  FKPSDQTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVD 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS
Sbjct: 118 YLNTNKTPVNQVFHFSVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 ALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +    S +L E+P EAK+IV K++DA+  R+AAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 AVEQEMGRFFSDFLLENPNEAKLIVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 298 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIII 502
           GTLITALG GIG+D ++I KLRYH III
Sbjct: 358 GTLITALGCGIGRDEYNIEKLRYHNIII 385


>gi|324331794|gb|ADY38683.1| DNA gyrase subunit B [Ignatzschineria indica]
          Length = 376

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 219/378 (57%), Positives = 285/378 (75%), Gaps = 3/378 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           +SGGLHGVGVSVVNALSS LKL I + G I+E  +  G  D PL   G   + TGT V F
Sbjct: 2   ISGGLHGVGVSVVNALSSKLKLTIYKHGKIHEQEYTLGDPDYPLREIGET-DKTGTTVYF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS ++F+  DF+YDTL  RLREL+FLNS ++I+L D+R  + RE    Y+GGI+A+V  
Sbjct: 61  KPSKEVFNNIDFDYDTLYKRLRELAFLNSGIRITLRDER--DDREDVFQYEGGIKAYVEL 118

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +++++  +          +DNIS++++++W DGY E+V C+TNNIPQ DGGTHL+G R+A
Sbjct: 119 INKNRNKIHPQIFYCNCQKDNISVEISLQWTDGYQESVFCYTNNIPQSDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR +  Y+++    KK K +  GDD REG T+++S+K+P P+FSSQTKEKLVSSEVR V
Sbjct: 179 MTRTLNRYMQEEGLLKKTKVATTGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPV 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+S + + L  +L E P +AK I  K++DA+M R+AAR+AR+ TRRK  LDIA LPGKLA
Sbjct: 239 VDSILAERLEEFLLERPEDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP KSELF+VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFD+M+SS EIG
Sbjct: 299 DCQEKDPAKSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMISSAEIG 358

Query: 476 TLITALGTGIGQDSFDIN 493
           TLITALG GIG+D FD +
Sbjct: 359 TLITALGCGIGRDEFDPD 376


>gi|19909739|dbj|BAB87065.1| DNA gyrase subunit B [Paracoccus sp. N81106]
          Length = 288

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 158/288 (54%), Positives = 201/288 (69%), Gaps = 6/288 (2%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HHM+YEV+DN IDE L G+AD + V ++ D S +V DNGRGIP D+H  EG+SAAEVIMT
Sbjct: 1   HHMVYEVVDNGIDEVLAGHADFVQVKIHADSSVSVRDNGRGIPVDMHAGEGVSAAEVIMT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           +LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+LRI R    + + F  G     LVV
Sbjct: 61  QLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNDKEHFVRFERGDTVKSLVV 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSV------QDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            G A  ++GTEV F+ S+            D+++ TL++RLREL+FLNS V+I L D+R 
Sbjct: 121 VGDAPGESGTEVRFMASAKTVHPDGTFSNLDYSFKTLENRLRELAFLNSGVRIILEDERH 180

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            E ++  +FY+GG++ FV YLDR K  +M  PI I G +  I +++AM WND YHE VL 
Sbjct: 181 AEVQKTELFYEGGVKEFVKYLDRSKTAVMPEPIFITGEKGGIGVEVAMWWNDSYHETVLP 240

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           FTNNIPQ+DGGTH++G R ALTR I  Y + S  +KK+K    GDD R
Sbjct: 241 FTNNIPQRDGGTHMAGFRGALTRVIGKYAQDSGIAKKEKVDFTGDDAR 288


>gi|4996780|dbj|BAA78435.1| subunit B protein of DNA gyrase [bacterium rJ9]
 gi|4996822|dbj|BAA78456.1| subunit B protein of DNA gyrase [bacterium rA2]
          Length = 323

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 165/327 (50%), Positives = 213/327 (65%), Gaps = 32/327 (9%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLH 88
           DT   +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V+DNGRGIPT     D H
Sbjct: 1   DTSDGTGLHHLVFEVVDNSIDEALAGYCDDIAVTIHADGSLSVTDNGRGIPTGVKMDDKH 60

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
            E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G ++++
Sbjct: 61  -EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHQI 119

Query: 149 SFINGILD------------NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHR 195
            F  G               +P+ VTG    D GT V FLP  +IF    DF+Y+TL  R
Sbjct: 120 EFARGAAQNRQIEVVDGFETSPMKVTG-TTEDRGTSVRFLPDVEIFGDNHDFHYETLAKR 178

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLN+ V+I LID+R+ +         GG+  FV ++   KK L  +P    GSR 
Sbjct: 179 LRELSFLNNGVRIRLIDERTGKE--DDFSGAGGVLGFVKFISTGKKVLHPTPFYASGSRP 236

Query: 256 ----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                      I +++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+ 
Sbjct: 237 AETYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIA 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSI 332
            +  +KK K  V GDD REG   VLS+
Sbjct: 297 DNELAKKAKVEVTGDDMREGLCCVLSV 323


>gi|159161830|gb|ABW95907.1| gyrase B [Xenorhabdus nematophila]
          Length = 379

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 224/382 (58%), Positives = 291/382 (76%), Gaps = 4/382 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y  SGGLHGVGVSVVNALS  L+L I+R+G ++E ++ +G+  +PL + G     TGT V
Sbjct: 1   YNPSGGLHGVGVSVVNALSEKLELTIRRDGKVHEQTYHHGVPQSPLNIVGDTE-QTGTTV 59

Query: 174 TFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS D F    +F YD L  RLRELSFLNS V I L+DKR+    E    YKGGI+AF
Sbjct: 60  RFWPSMDTFKINTEFEYDILAKRLRELSFLNSGVSIRLVDKRT--NAEDLFHYKGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L R+K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEFLSRNKNPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 238 KTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINK 494
           E+ TLITALG GIG+D ++ +K
Sbjct: 358 EVATLITALGCGIGRDEYNPDK 379


>gi|323133438|gb|ADX30737.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 381

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 221/383 (57%), Positives = 295/383 (77%), Gaps = 4/383 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G + + TGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGDS-DKTGTRLRF 59

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++    Y+GGI AFV 
Sbjct: 60  WPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHFTYEGGIRAFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+DGGTHL+G R
Sbjct: 119 HLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 GALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VES +N+  + +L E P +AKII  K++DAS  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 239 TAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRKGALDLAGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 299 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 358

Query: 474 IGTLITALGTGIGQDSFDINKLR 496
           + TLITA+G GIG+D ++ +KLR
Sbjct: 359 VATLITAMGCGIGRDEYNPDKLR 381


>gi|116488843|gb|ABJ98772.1| DNA gyrase B [Ruegeria atlantica]
          Length = 382

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 234/382 (61%), Positives = 293/382 (76%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS+WL+LR+ R G  +   F  G     L V    G+ TGTEV 
Sbjct: 1   QVSGGLHGVGVSVVNALSNWLELRVWRNGKEHVARFEGGETVEHLKVVAECGDRTGTEVR 60

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL S D FS  +++++TL+ RLREL+FLNS V+I LID+R  E  E  +FY+GG++ FV 
Sbjct: 61  FLASLDTFSNLEYSFETLEKRLRELAFLNSGVRIILIDERPAERLETELFYEGGVKEFVK 120

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLDR K   M  PI I+G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R 
Sbjct: 121 YLDRSKTSAMPEPIYIKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHIAGFRG 180

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR I +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR 
Sbjct: 181 ALTRTINNYAQTSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRP 240

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +N+ L+ W EE+P  AKIIV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL
Sbjct: 241 AVEGLMNEKLAEWFEENPNVAKIIVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKL 300

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DCSE+DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+MLSSQEI
Sbjct: 301 KDCSEKDPTKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLSSQEI 360

Query: 475 GTLITALGTGIGQDSFDINKLR 496
           G L+ ALGTGIG+D F+I KLR
Sbjct: 361 GNLVMALGTGIGRDEFNIEKLR 382


>gi|19909645|dbj|BAB87018.1| DNA gyrase subunit B [Spirillum pleomorphum]
          Length = 389

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 227/392 (57%), Positives = 296/392 (75%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G+I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSELLVLTVRRSGHIWEQTYVHGVPQEPMHIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS   F    FN+D L  RLRELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TELHFKPSPLTFVNIHFNWDILAKRLRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGG HL 
Sbjct: 118 AFVEYLNLNKTAVNQIFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGAHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNAYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGRYFTDFLLENPAEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+S
Sbjct: 298 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVERARFDRMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+GTLITALG GIG+D ++I+KLRYH III
Sbjct: 358 SQEVGTLITALGCGIGRDEYNIDKLRYHNIII 389


>gi|84310530|gb|ABC55413.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 189/392 (48%), Positives = 272/392 (69%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YK   GLHGV  SVVNALS+ L + + R+G I+  ++  G+    L + G   + TG
Sbjct: 1   GSGYKYPAGLHGVSASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K RYHK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARYHKVV 390


>gi|6644321|gb|AAF21006.1|AF208255_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 386

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 231/389 (59%), Positives = 293/389 (75%), Gaps = 3/389 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTD 505
           LITALG GIG+D ++ +KLR  +    TD
Sbjct: 358 LITALGCGIGRDEYNPDKLRVSQHHHHTD 386


>gi|88824765|gb|ABD52428.1| gyrase B [Mycobacterium avium]
          Length = 432

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 194/433 (44%), Positives = 266/433 (61%), Gaps = 33/433 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ I R+G  +   + + +    L   G A   TG
Sbjct: 3   NSGYNVSGGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVP-GTLKQ-GEATKRTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    DIF   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSDTAD 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+ QS I   G      ++
Sbjct: 121 APKSAQEKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK+IV 
Sbjct: 241 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKI 419

Query: 501 IIMTDADVDGAHI 513
           ++MTDADVDG+HI
Sbjct: 420 VLMTDADVDGSHI 432


>gi|254973567|gb|ACT98612.1| gyrase B [Alishewanella jeotgali]
          Length = 379

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 227/382 (59%), Positives = 289/382 (75%), Gaps = 4/382 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++   +  G+   PL V G     +GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSDVLELTIRRKGQVHSQIYHLGVPQAPLAVIGETE-GSGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F PS  IFS  +F+YD L  RLRELSFLNS V I L D+R+ +       Y GGIEA
Sbjct: 60  AIRFWPSPTIFSDINFHYDILAKRLRELSFLNSGVSIILTDERTDKT--DHFKYDGGIEA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV YL+R K  +          R++ I++++AM+WND Y ENV CFTNNIPQ+DGGTHL+
Sbjct: 118 FVQYLNRSKTSIHPKAFYFTDQREDGIAVEVAMQWNDSYQENVFCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + +Y+++   +KK K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRGALTRVLNTYIDQEGYAKKMKVQASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVRS VES + + L+ +L E+P +AKIIV K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVRSAVESVMAEKLNEYLLENPGDAKIIVGKIVDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDI 492
           SQE+GTLITALG GIG++ ++ 
Sbjct: 358 SQEVGTLITALGCGIGREEYNP 379


>gi|12644444|sp|Q44271|GYRB_ACIG6 RecName: Full=DNA gyrase subunit B
 gi|11270910|pir||T43900 DNA gyrase chain B [imported] - Acinetobacter sp. (fragment)
 gi|4514411|dbj|BAA75404.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 388

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 226/391 (57%), Positives = 284/391 (72%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I R G  +E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLIIHRAGQTHEQEYCHGDSQYPLKVIGET-DKSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS   FS   F+ + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TVIRFWPSELTFSQTIFSVEILARRLRELSFLNAGVRIVLRDERV--NFEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       +   I++++A++WN+ Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTTDTDSGIAVEVALQWNESYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLESENILKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG++ ++ +KLRYHKII
Sbjct: 358 SQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|18369812|dbj|BAB84101.1| DNA topoisomerase II [Aspergillus fumigatus]
          Length = 1495

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 150/710 (21%), Positives = 262/710 (36%), Gaps = 49/710 (6%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------G 40
           D    S+  ++  Q L  L+ + KRP  YIG  +  +                      G
Sbjct: 46  DQPATSTNASEKYQKLTQLEHIIKRPDTYIGSVERTTQFMWVYDSETEGMKYKEVSYVPG 105

Query: 41  LHHMIYEVLDNAIDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
           L+ +  E++ NA D     +     D I VT++ + G  +V +NGRGIP ++H +EGI  
Sbjct: 106 LYKIFDEIVVNAADNKQNDANM---DEIRVTIDRESGEISVWNNGRGIPIEIHAKEGIYV 162

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+   +  +  R+   Y+ ++ N 
Sbjct: 163 PELIFGHLLTSSNYDDTQKKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTNN 222

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +          A  +  T+VT  P    F ++  + D      R +  L  + ++++   
Sbjct: 223 MSKMGKAKITDAKGEDYTKVTCKPDYAKFGMEGMDDDFEALVKRRVYDLAGTTKVAVKLN 282

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
            S  P      Y       +      +    +    I     +   ++    +DG    V
Sbjct: 283 GSRIPVRNFKKYMEMYTKAIRRERGEEDTNAKDE--IITCSPDPRWEIGFAVSDGSFHQV 340

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GGTH++ +   +  ++   V+K   +     ++     R      ++  
Sbjct: 341 -SFVNSIATTSGGTHVNYIADQICARLADQVKKKNKNG---ATLKPAQIRNHIFIFVNAL 396

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P F+SQTKE+L +   +   +  + +     +    +   I+      A  +     
Sbjct: 397 IVNPAFTSQTKEQLTTKSSQFGSKCVLEEDFYKKILRTEVMNNILHFAQAKADQLLKKTD 456

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAI 450
             R        L  A+  G       +D     L L EGDSA G A  GR+    +   +
Sbjct: 457 GGRRTRMNNPKLVDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGV 510

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            PLRGK+LNV  A F+++  +QEI  +   LG    ++      LRY  ++IMTD D DG
Sbjct: 511 FPLRGKLLNVRDASFEQISKNQEIQNIKNFLGLQHKKEYTHTRGLRYGHLMIMTDQDHDG 570

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           +HI+ LL+ F   Q PSL+      I    P+  + +G      K               
Sbjct: 571 SHIKGLLINFLQAQFPSLLKIPEFLIEFITPIAKVWKGDPKNPTKQHSFFTMPEYEAWKE 630

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
           +                     D  +    L +     H     E  +I   F+ +   E
Sbjct: 631 DHKHDRGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTLQDHETELIELAFSKKKADE 690

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                  +            + ++   IN   IL            V++G
Sbjct: 691 R-KEWLRQFKPGTFLDHSVDKITYTDFINKELILFSMADNQRSIPSVVDG 739


>gi|302746270|gb|ADL62725.1| GyrB [Morganella morganii subsp. sibonii]
          Length = 384

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 226/387 (58%), Positives = 292/387 (75%), Gaps = 4/387 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVN LS  L+L I+R+G ++E  + +G   + L + G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTIVGET-DKT 59

Query: 170 GTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F PS D F    +F YD L  RLRELSFLNS V I L+DKR  +       Y+GG
Sbjct: 60  GTRVRFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLVDKRDGKE--DHFHYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+AFV YL R K  +  +       +D+I ++++M+WND + ENV CFTNNIPQ+DGG H
Sbjct: 118 IKAFVEYLSRAKTSIHNNVFYFSTEKDDIGVEISMQWNDSFQENVYCFTNNIPQRDGGAH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+A+TR + SY+EK   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE+ +N+ LS +L+E+P + KIIV K++DA+  R+AARRAR++TRRKG LD+A
Sbjct: 238 SSEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALDLA 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM
Sbjct: 298 GLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKL 495
           L+SQE+ TLITALG GIG+D ++ +KL
Sbjct: 358 LASQEVATLITALGCGIGRDEYNPDKL 384


>gi|85541237|gb|ABC70859.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 379

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 225/381 (59%), Positives = 291/381 (76%), Gaps = 4/381 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   + TGT V F PS
Sbjct: 1   GLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPS 59

Query: 179 SDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+
Sbjct: 60  HETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           ++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+T
Sbjct: 118 KNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 178 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC
Sbjct: 238 QQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ERDP  SEL+LVEGDSAGG AKQGR+R+N AILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 298 QERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVEKARFDKMLSSQEVATL 357

Query: 478 ITALGTGIGQDSFDINKLRYH 498
           ITALG GIG+D ++ +KLRYH
Sbjct: 358 ITALGCGIGRDEYNPDKLRYH 378


>gi|154347394|dbj|BAF74638.1| DNA gyrase subunit B [Streptobacillus moniliformis]
          Length = 429

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 196/429 (45%), Positives = 263/429 (61%), Gaps = 24/429 (5%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  +Y+ SGGLHGVG+SVVNALS  L+  + R+G +    F  G      +  G+
Sbjct: 4   AGGKFDNSNYQFSGGLHGVGISVVNALSEKLEATVTRDGRVVRQIFSKGNAITEALEIGN 63

Query: 165 AG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREIT 222
           A     GT + F P +DIF    F+YD LQ RL+EL++LN  ++I LID ++  + +E  
Sbjct: 64  APAKAHGTTIKFKPDADIFETIQFDYDILQRRLKELAYLNQGIKIILIDARKPEKVKEEV 123

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRI-------QGS---------RDNISIDLAMRWN 266
            +++GGI  FV+     +  +++  I +       +G               +++AM + 
Sbjct: 124 FYFEGGIVDFVTE-LVGEDKIIEDVIYMKDRVMLTEGEVDDEGNPIPDKYSEVEIAMIYK 182

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           +        F NNI   DGGTH+SGLR+ALTR I     +       K    G+D REG 
Sbjct: 183 NSQSTIEYSFVNNINTSDGGTHVSGLRTALTRTINDLARE----ASSKNEFKGEDVREGL 238

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
             VLS+K P+P+F SQTK KL SSE  S+V       L  +LE+HP + K I+ K+  + 
Sbjct: 239 VYVLSLKFPEPQFESQTKAKLGSSEATSIVSGVFGSKLKMYLEDHPKDCKTIIDKIAISK 298

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R+AA+RARDL  +K    +  LPGKLADC  ++P++SE+F+VEGDSAGGSAKQGR +E
Sbjct: 299 QAREAAKRARDLVTKKNEFSLGGLPGKLADCQSKNPEESEIFIVEGDSAGGSAKQGRFKE 358

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
            QAILPLRGKILNVE+A   K+L + EI  +ITA G G G D FDI KLRYHKIIIMTDA
Sbjct: 359 YQAILPLRGKILNVEKANEHKILENSEIKAMITAFGAGFG-DRFDIEKLRYHKIIIMTDA 417

Query: 507 DVDGAHIRT 515
           DVDG+HIRT
Sbjct: 418 DVDGSHIRT 426


>gi|82568119|dbj|BAE48494.1| DNA gyrase B [Mechercharimyces mesophilus]
 gi|82568123|dbj|BAE48496.1| DNA gyrase B [Mechercharimyces mesophilus]
          Length = 389

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 195/393 (49%), Positives = 281/393 (71%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            + Y  SGGLHGVGVSV NA S WL+++++R+G I+   +  G+    L V G   ++TG
Sbjct: 1   GEGYTFSGGLHGVGVSVGNAHSEWLEVKVRRDGKIHFQRYERGVPQADLKVIGET-DETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           TE+ F P  D+F+    ++Y+TLQ RLRELSFLNS + I++ D+R  +         GGI
Sbjct: 60  TEIHFKPDPDVFTETTEYDYNTLQTRLRELSFLNSGLAITITDERGDKSDHYKF--DGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+R+++ + + P+ IQG++D +++++AM++ND +  ++  + NNI   +GGTH 
Sbjct: 118 RSYVEHLNRNREVMHKEPVYIQGTKDGLNVEIAMQYNDSFSSHIYSYANNIHTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  ++   K    ++ GDD REG TS++S+K+ DP+F  QTK KL +
Sbjct: 178 AGFKSALTRVINDYARRNNLLKGQDSNLTGDDVREGLTSIISVKIADPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R+V ES  ++    +LEEHP EAK +++K L A+  R+AARRAR+LTRRK  L+++S
Sbjct: 238 SEARTVTESLFSEHFHIFLEEHPQEAKKVIQKALTAARAREAARRARELTRRKNALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ R+   SEL+LVEGDSAGG+AKQGR R  QAILPLRGKI+NVE++R DK L
Sbjct: 298 LPGKLADCTSRNASSSELYLVEGDSAGGTAKQGRDRMFQAILPLRGKIINVEKSRLDKAL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++E+ T+ITALGTG+G+D F I+K RYHKIII
Sbjct: 358 SNEEVRTIITALGTGVGED-FQIDKARYHKIII 389


>gi|262065131|gb|ACY07619.1| gyrase B subunit [Listonella anguillarum]
          Length = 400

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 222/389 (57%), Positives = 299/389 (76%), Gaps = 3/389 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + TGT + 
Sbjct: 9   QVSGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLR 67

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV 
Sbjct: 68  FWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFRYEGGIKAFVG 126

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+R+K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G R
Sbjct: 127 HLNRNKTPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFR 186

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 187 GALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 246

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES + + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 247 SAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 306

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 307 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 366

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIII 502
           + TLITALG GIG+D ++ +KLR   I++
Sbjct: 367 VATLITALGCGIGRDEYNPDKLRILCIVL 395


>gi|38224399|gb|AAR14135.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp.
           funduliforme]
          Length = 404

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 183/403 (45%), Positives = 268/403 (66%), Gaps = 3/403 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGND 168
             +YKVSGGLHGVG+SVVNALS W ++++KREGN+Y   ++ G     + +     AG  
Sbjct: 2   NDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPIEDVKIISALEAGET 61

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  +IF    F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +  ++GG
Sbjct: 62  TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGG 121

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  F+  + +  + L+   I I+G  + + +D+A  +  G  E +  F NNI   +GG+H
Sbjct: 122 ISDFLKEVTQENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEIIYSFVNNINTTEGGSH 181

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKR-SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           ++G R+ LT+ I    +KS   +  K  +       +    ++S+K+P P+F  QTK KL
Sbjct: 182 VTGFRTCLTKVIIDIGKKSGIFEGKKMENYKEATFGKELLLIISVKVPQPQFEGQTKTKL 241

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SEV  +V + ++  L  +LE++P + K+I++K+L++   R+AA+RAR+   RK VL++
Sbjct: 242 GNSEVSGIVNTVLSTDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEV 301

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            SLPGKLADCS + P++ E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K
Sbjct: 302 GSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHK 361

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            L S EI  ++TA GT IG++SFD+ KLRY KII+MTDADVDG
Sbjct: 362 ALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 404


>gi|23428629|gb|AAM12397.1| gyrase B [Zymomonas mobilis subsp. mobilis CP4]
          Length = 190

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 111/191 (58%), Positives = 143/191 (74%), Gaps = 5/191 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ + Q+  YDA SI++L+GLDAV+KRP MYIGDTD  SGLHHM++EV DNAIDE+L GY
Sbjct: 1   MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ----KSYKV 116
            D++ + +  DGS +V DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF+      +YKV
Sbjct: 61  CDLVKIAIYDDGSVSVEDNGRGIPTGIHPEEGVSAAEVIMTQLHAGGKFDNNANSNAYKV 120

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS +L+L + R+G  + M F +G+   PL V G A +  GT V F 
Sbjct: 121 SGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRFH 179

Query: 177 PSSDIFSVQDF 187
           PS++ F + +F
Sbjct: 180 PSAETFKITEF 190


>gi|86169577|gb|ABC87028.1| DNA gyrase subunit B [Weissella confusa]
          Length = 394

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 186/395 (47%), Positives = 269/395 (68%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGND 168
              YKVSGGLHGVG SVVNALS+ L + + R+G  Y M F  G +   +      +A   
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELDVMVVRDGQGYAMDFERGHVKTTMHSAPVDNAPVS 60

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GT V FLP  DIF     ++Y  L +R+REL+FLN  ++IS+ D R+ EP   +  Y+G
Sbjct: 61  RGTIVHFLPDPDIFRETTTYDYKILMNRVRELAFLNKGLRISITDNRADEPETESFHYEG 120

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+ +V +L+ +K  +   PI ++G  + I +++++++ D YH N+L FTNNI   +GGT
Sbjct: 121 GIKEYVRFLNVNKDVIFDDPIYVEGMENGIEVEVSLQYTDDYHSNMLSFTNNIHTYEGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G ++ALTR I  Y  K+   K++  ++ GDD REG T+++S+K P+P+F  QTK KL
Sbjct: 181 HETGFKAALTRVINDYARKNGQLKENDDALSGDDVREGLTAIVSVKHPNPQFEGQTKTKL 240

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +S+ R+ V+   ++  + ++ E+P  AK IV+K + A   R AA+RAR+ TR+K  L+I
Sbjct: 241 GNSDARTAVDRMFSETFNRFMMENPAVAKQIVEKGILAGKARMAAKRAREATRKKSGLEI 300

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A+LPGKLAD + +DP+ SELF+VEGDSAGGSAKQGR R  QAILP+RGKILNVE+A  DK
Sbjct: 301 ANLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASLDK 360

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +L+++EI +L TA+GTG G + FD+ K +YHK+II
Sbjct: 361 ILANEEIRSLFTAMGTGFGNE-FDVTKAKYHKLII 394


>gi|224086458|ref|XP_002193920.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Taeniopygia guttata]
          Length = 2085

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 148/727 (20%), Positives = 268/727 (36%), Gaps = 81/727 (11%)

Query: 11   DADSI-QILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEV 48
              + I Q    L+ +  RP  YIG  +  +                     GL+ +  E+
Sbjct: 593  TVEHIYQKKTQLEHILLRPDTYIGSVELVTQQMWVFDEGVGLNCRDVTFVPGLYKIFDEI 652

Query: 49   LDNAIDESLE-GYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
            L NA D          I VT++  + + +V +NG+GIP   HK E +    +I  +L   
Sbjct: 653  LVNAADNKQRDKNMSCIKVTIDVENNTISVWNNGKGIPVVEHKVEKVYVPAMIFGQLLTS 712

Query: 107  GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVVTGS 164
              ++    KV+GG +G G  + N  S+   +    RE   +++ ++ + +     +    
Sbjct: 713  SNYDDNEKKVTGGRNGYGAKLCNIFSTKFTVETGCREYKKLFKQTWTDNMGKAGEMKLKY 772

Query: 165  AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
               D  T VTF P    F +   + D    +  R  +++     V++ L  +R       
Sbjct: 773  FDGDDYTCVTFQPDLSKFKMTVLDKDIVALMSRRAYDIAGSTKDVKVFLNGQR------- 825

Query: 222  TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                  G  ++V    + K     + +++     N   ++ +  ++   + V  F N+I 
Sbjct: 826  --LPVKGFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVCLTLSEKGFQQV-SFVNSIA 882

Query: 282  QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
               GG H+  +   L  ++   V+K   +      V     +      ++  + +P F S
Sbjct: 883  TTKGGRHVDYVADQLVTKLIDVVKKKNKNGVG---VKPFQVKNHMWIFVNALIENPTFDS 939

Query: 342  QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
            QTKE +            +++             + I+  V   +         +    +
Sbjct: 940  QTKENMTLQSKNFGSTCKLSEKFIKGAV-GCGIVESILNWVKFKAQ---NQLNKKCSAVK 995

Query: 402  KGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGK 456
               +          D   ++     L L EGDSA      G    GR +    + PLRGK
Sbjct: 996  HSKIKGVPKLDDANDAGSKNSLDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGK 1053

Query: 457  ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHI 513
            ILNV  A   +++ + EI  +I  +G    ++  D      LRY KI+IMTD D DG+HI
Sbjct: 1054 ILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDQESLKSLRYGKIMIMTDQDQDGSHI 1113

Query: 514  RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL-INQSLSEEI 572
            + LL+ F     PSL+ + FL     P+   ++ K           E++    Q+ +   
Sbjct: 1114 KGLLINFIHHNWPSLLRHNFLEEFITPIIKASKNKEEIAFYSIPEFEEWKASTQNYNSWK 1173

Query: 573  ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
              +    G  +  + + +  D  K     K   P       + A I+  F+ +  +E   
Sbjct: 1174 IKYYKGLGTSTSKEAKEYFADMAKHRIGFKYSGPE------DDAAITLAFSKKKIEERKE 1227

Query: 633  SLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI 692
             L        NF+ ++ ++  HG              G    ++     I     K   +
Sbjct: 1228 WLT-------NFMEDRRQRKLHGLPEEY-------LYGKNTDYLTYNDFIN----KELVL 1269

Query: 693  FSNRIEE 699
            FSN   E
Sbjct: 1270 FSNSDNE 1276


>gi|156071394|dbj|BAF75804.1| DNA gyrase subunit B [Bradyrhizobium canariense]
          Length = 277

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 162/279 (58%), Positives = 204/279 (73%), Gaps = 2/279 (0%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           HM+YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+
Sbjct: 1   HMVYEVVDNAIDEALAGHATRVDVILNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQ 60

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V 
Sbjct: 61  LHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVV 120

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
           G A    GTEVTF  S++ F   ++++ TL+HRLREL+FLNS V I+L D R    +   
Sbjct: 121 GDAPGRRGTEVTFQASTETFKNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREE 180

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           M Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ
Sbjct: 181 MHYSGGVEEFVKYLDRNKKAIVPAPIMVRAESNGIGVEAALWWNDSYHENVLCFTNNIPQ 240

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           +DGGTHL+G R ALTRQ+  Y E +  +KK+K ++ GDD
Sbjct: 241 RDGGTHLAGFRGALTRQVNGYAEAN--AKKEKIALTGDD 277


>gi|269849457|gb|ACZ49797.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 374

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 224/377 (59%), Positives = 285/377 (75%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLTDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA   R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAVRAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|45382161|ref|NP_990122.1| DNA topoisomerase 2-alpha [Gallus gallus]
 gi|13959708|sp|O42130|TOP2A_CHICK RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|6714553|dbj|BAA22539.2| DNA topoisomeraseII_alpha [Gallus gallus]
          Length = 1553

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 143/745 (19%), Positives = 278/745 (37%), Gaps = 75/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 35  YQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVGLNCRDVTFVPGLYKIFDEILVNAA 94

Query: 54  DESLE-GYADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ +  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 95  DNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 154

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++ + +     +       + 
Sbjct: 155 DEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKKLFKQTWTDNMGKAGEMTLKHFDGED 214

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T VTF P    F +   + D    +  R  +++     V++ L  KR            
Sbjct: 215 YTCVTFQPDLSKFKMTILDKDIVALMSRRAYDIAGSTKDVKVFLNGKR---------LPV 265

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     + +++     N   ++ +  ++   + V  F N+I    GG
Sbjct: 266 KGFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVCLTLSEKGFQQV-SFVNSIATTKGG 324

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +      V     +      ++  + +P F SQTKE 
Sbjct: 325 RHVDYVADQIVTKLIDVVKKKNKNGVG---VKPFQVKNHMWIFVNSLIENPTFDSQTKEN 381

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +            +++             + I+  V   +         +    +   + 
Sbjct: 382 MTLQAKSFGSTCKLSEKFIKGAV-GCGIVESILNWVKFKAQ---TQLNKKCSAVKHTKIK 437

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   ++     L L EGDSA      G    GR +    + PLRGK+LNV 
Sbjct: 438 GVPKLDDANDAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKMLNVR 495

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 496 EASHKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLI 555

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIELFCD 577
            F     PSL+ + FL     P+  +++ K           E++  + Q+ +     +  
Sbjct: 556 NFIHHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNYNSWKIKYYK 615

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +     K   P       + A I+  F+ +  +E    L   
Sbjct: 616 GLGTSTSKEAKEYFADMARHRIGFKYSGPE------DDAAITLAFSKKKVEERKEWLT-- 667

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ +++ HG   +   L  +    +     +    +    S  +R   + +
Sbjct: 668 -----NFMEDRRQRNVHGLPEDY--LYGKDTNYLTYNDFINKELVLFSNSDNERSIPSLV 720

Query: 698 EENYLTILSLI----CNGDKIKITG 718
           +        ++       DK ++ G
Sbjct: 721 DGLKPGQRKVLFTCFKRNDKREVKG 745


>gi|83854005|gb|ABC47940.1| gyrase B subunit [Vibrio parahaemolyticus]
 gi|126035362|gb|ABN72434.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 381

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 225/383 (58%), Positives = 299/383 (78%), Gaps = 3/383 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ FS  +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV +L+
Sbjct: 60  SAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQHLN 118

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+AL
Sbjct: 119 TNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 179 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 238

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 239 ESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 298

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 299 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 358

Query: 477 LITALGTGIGQDSFDINKLRYHK 499
           LITALG GIG+D ++ +KLRYH 
Sbjct: 359 LITALGCGIGRDEYNPDKLRYHN 381


>gi|89511878|dbj|BAE86872.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc]
 gi|283132379|dbj|BAI63595.1| DNA gyrase subunit B [Leptospira biflexa]
          Length = 387

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 197/389 (50%), Positives = 271/389 (69%), Gaps = 3/389 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS++L++ + +EG ++   +  G+    + + G   +  GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSTYLEVEVHQEGKLHYQKYQAGVPVEDVKIIGETTH-RGTVV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P   IF+  DF++DTL  R RE++FLN  + I + D+R  E  +    + GGI +FV
Sbjct: 60  RFRPDHTIFTTVDFSFDTLSARFREIAFLNKGLLIRIEDQRKEEFAKHEFKFDGGIVSFV 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y+   K PL    +   G ++N+  ++A+++ D Y EN+ CFTN I    GGTHL G R
Sbjct: 120 EYITESKHPLH-KVLHFVGEKENVWAEIALQYCDTYSENIFCFTNAINNNLGGTHLEGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +ALTR +  +++K     K + +   GDD +EG  +V+SIK+P P+F+SQTKEKLV++EV
Sbjct: 179 TALTRTLNDHLKKDQTLFKKQPNGLQGDDIKEGLCAVISIKIPQPQFNSQTKEKLVNAEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + ++++   +GL+ + EE+P   K I++K + AS  R+AARRARDLTRRK VL+   LPG
Sbjct: 239 KGLMQTITGEGLNRYFEENPAIIKKILEKCILASKAREAARRARDLTRRKTVLEGGGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCSE+DP+  ELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS++
Sbjct: 299 KLADCSEKDPEHCELFLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSNE 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKII 501
           EI TLIT +GTGIG D F++ KLRY KII
Sbjct: 359 EIRTLITVMGTGIGDDEFNVEKLRYRKII 387


>gi|4996832|dbj|BAA78461.1| subunit B protein of DNA gyrase [bacterium rA9]
          Length = 282

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 145/279 (51%), Positives = 194/279 (69%), Gaps = 9/279 (3%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEG 92
           T   +GLHHM++EV+DNAIDE+L GY D I VT++ D S +V+DNGRGIPT +HK  E  
Sbjct: 2   TSDGTGLHHMVFEVVDNAIDEALAGYCDDIVVTIHADNSISVTDNGRGIPTAIHKDDEHH 61

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SAAE++MT LHAGGKF+Q SYKVSGGLHGVGVS VNALS WL+L I R G  ++M F  
Sbjct: 62  RSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTIWRNGEEHQMEFRR 121

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G    PL VTG A + TGT V +L  ++IF+  D+ Y+ L  RLRELSFLN+ V+I L+D
Sbjct: 122 GERVAPLAVTGPA-DRTGTRVQYLADAEIFNNIDYTYEILARRLRELSFLNNGVKIRLVD 180

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----NISIDLAMRWNDG 268
           +R+ +   +     GG++ FV Y++R K  L  +   +    +     + +++AM+WND 
Sbjct: 181 ERTGQDENLAFL--GGVKGFVQYINRAKTVLHDNIFAVTTESEAGGVRVGVEVAMQWNDS 238

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR +  Y+  +
Sbjct: 239 YAETVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYITDN 277


>gi|297491323|ref|XP_002698796.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Bos taurus]
 gi|296472299|gb|DAA14414.1| topoisomerase (DNA) II beta 180kDa [Bos taurus]
          Length = 1707

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 142 YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 201

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 202 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 261

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 262 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 321

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 322 YTCITFQPDLSKFKMEKLDRDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 372

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 373 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 431

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 432 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 488

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 489 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 544

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 545 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 602

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 603 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 662

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 663 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 722

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 723 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 774

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 775 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 826

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 827 VDGFKPGQRKVLFTCFKRNDKREVK 851


>gi|295979569|dbj|BAJ07457.1| DNA gyrase subunit B [Rhodoferax fermentans]
          Length = 325

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 161/328 (49%), Positives = 214/328 (65%), Gaps = 25/328 (7%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHK 89
           DT   +GLHH+++EV+DN+IDESL G+ D I VT++ D S +V DNGRGIPT    D   
Sbjct: 1   DTSDGTGLHHLVFEVVDNSIDESLAGHCDDILVTIHADNSVSVVDNGRGIPTGVKMDDKH 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++R+G ++ + 
Sbjct: 61  EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDGKVHVLE 120

Query: 150 FINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRL 196
           F  G +             +P+ V G      GTEV FLP +DIF   + F+YD L  RL
Sbjct: 121 FSKGFVQNRITEVQDGIEVSPMKVIGDTE-RRGTEVHFLPDTDIFQQNNDFHYDVLAKRL 179

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD- 255
           RELSFLN  V+I L D+R+ +          G+  FV+++++ K  L  +     G R  
Sbjct: 180 RELSFLNHGVRIRLKDERTGKE--DDFSGADGVRGFVNFINKGKTILNPNIFHALGDRQS 237

Query: 256 ----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
               NI +++AM+WN GY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y++ +  +K
Sbjct: 238 DQNTNIGVEVAMQWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDDTEVAK 297

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           K K  V GDD REG T VLS+K+P+P+F
Sbjct: 298 KAKVEVTGDDMREGLTCVLSVKVPEPKF 325


>gi|18147163|dbj|BAB83062.1| DNA gyrase subunit B [Alcanivorax sp. Oha-1]
          Length = 381

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 230/384 (59%), Positives = 292/384 (76%), Gaps = 4/384 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G   + +GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQVYRHGVPAMPLEVVG-TTDSSGTAIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS + F+   F+YD L  RLRELSFLNS V+I L+D+R+ E       Y+GG+ AFVSY
Sbjct: 60  RPSPETFTNIKFHYDILAKRLRELSFLNSGVRIHLLDERNGEE--DVFEYEGGLSAFVSY 117

Query: 236 LDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+ +K PL Q          D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL+G R+
Sbjct: 118 LNENKTPLNQVFHFQFDREEDGIAVEVAMQWNDSYQENLFCFTNNIPQRDGGTHLAGFRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY+EK    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 178 ALTRTLNSYMEKEGLLKKEKANPTGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  + +    +L E+P EAK I  K++DA+  RDAAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 AVEQTMGELFQDYLLENPQEAKAISSKIIDAARARDAARKAREMTRRKGALDIAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYH 498
           GTLITALG GIG+D +++ KLRYH
Sbjct: 358 GTLITALGCGIGRDEYNVEKLRYH 381


>gi|313747320|dbj|BAJ41207.1| DNA gyrase subunit B [Terribacillus halophilus]
          Length = 390

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 204/393 (51%), Positives = 275/393 (69%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+E SF  G+    L VTG + + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTNLDVTVHRDGKIHEQSFERGVPQGDLKVTGES-DRTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF+    +N +TL  R+REL+FLN  + ISL DKR  E   IT  Y+GGI
Sbjct: 60  TITHFKPDPEIFTETTAYNKETLLVRIRELAFLNKGLAISLEDKRDEESETITFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+R K+ L   P   + +   I++++A+++NDGY  ++  F NNI   +GGTH 
Sbjct: 120 RSYVEHLNRSKEVLH-EPFYAENTDSEITVEIALQYNDGYTSSIYSFANNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +S LTR I  Y  K+   K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 179 AGFKSGLTRVINDYARKNNMFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R V ++   +  S +L E+P  A+I+V+K L AS  R AA+RAR+LTRRKG L+++S
Sbjct: 239 SEARQVTDAAFTELFSKFLFENPDTARIVVEKGLMASRARIAAKRARELTRRKGALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDASISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ++ EI  +ITALGTGIG+D FDI+K RYHK++I
Sbjct: 359 ANNEIRAMITALGTGIGED-FDISKARYHKLVI 390


>gi|110612675|gb|ABG78300.1| GyrB [uncultured bacterium]
          Length = 406

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 192/411 (46%), Positives = 277/411 (67%), Gaps = 7/411 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  +YKVSGGL GVGVSVVNALS  L L I ++G  +   +  G  D+PL VTG + + 
Sbjct: 1   FDNNTYKVSGGLRGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPDSPLAVTG-SSDR 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F P   I     F+YD L HR RELSFLN S+ I+L ++ +   RE     +GG
Sbjct: 60  TGTAIRFYPDLTIMETDQFSYDVLAHRFRELSFLNPSLTITLAEEET--LRESVFHDEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGT 287
           I +F+S+++ +K+ L +     +   +  + +++ ++ D    E +L + NNIP ++GG+
Sbjct: 118 IRSFLSFVNENKRVLHEPLFFRKVLENGATFEISFQYQDTTDAETLLSYVNNIPTREGGS 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+ G RSALT+ +  ++     +K ++  V G+D REG ++++SIK+P+P+F  QTK KL
Sbjct: 178 HVRGFRSALTKVVNRFIRDKNLNKGEE--VKGEDIREGLSAIVSIKIPNPQFEGQTKAKL 235

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            SS V   +E+F+++ L    E+    A+ I  K + ++  R+AAR+AR+LT+RK VL+ 
Sbjct: 236 GSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQAREAARKARELTKRKNVLEG 295

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FD 466
           ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+ +  +
Sbjct: 296 SNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKTKGVE 355

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIRTLL
Sbjct: 356 KFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVDGSHIRTLL 406


>gi|4996786|dbj|BAA78438.1| subunit B protein of DNA gyrase [bacterium rJ13]
          Length = 323

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 164/327 (50%), Positives = 215/327 (65%), Gaps = 32/327 (9%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLH 88
           DT   +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V+DNGRGIPT     D H
Sbjct: 1   DTSDGTGLHHLVFEVVDNSIDEALAGYCDDIAVTIHADGSLSVTDNGRGIPTGVKMDDKH 60

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
            E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G ++++
Sbjct: 61  -EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHQI 119

Query: 149 SFINGILD------------NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHR 195
            F  G +             +P+ +TGS   D GT V FLP  +IF    DF+Y+TL  R
Sbjct: 120 EFARGFVQNRAIEVVDGFETSPMKITGSTE-DRGTAVRFLPDVEIFGDNHDFHYETLAKR 178

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLN+ V+I LID+R+ +         GG+  FV ++   KK L  +P    G+R 
Sbjct: 179 LRELSFLNNGVRIRLIDERTGKE--DDFSGAGGVLGFVKFISTGKKVLHPTPFHASGTRP 236

Query: 256 ----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                      I +++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+ 
Sbjct: 237 AETYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIA 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSI 332
            +  +KK K  V GDD REG   VLS+
Sbjct: 297 DNEFAKKAKVDVTGDDMREGLCCVLSV 323


>gi|308153064|dbj|BAJ22121.1| DNA gyrase subunit B [Bacillus badius]
          Length = 390

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 198/393 (50%), Positives = 276/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS  L++ + R+  IY  S+  G+    L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEKLEVFVHRDNQIYYQSYKRGVPQEELKVVGDT-DYTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F P ++IF+    + YDTL +RLREL+FLN  ++I + D+R          Y+GGI
Sbjct: 60  TTIHFKPDAEIFTETTVYEYDTLANRLRELAFLNRGIRIIIEDRREEGKTNEYY-YEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R K+ +   PI ++G++D I+ ++A+++N+G+  NV  F NNI   +GGTH 
Sbjct: 119 KSYVEHLNRTKEVVHSEPIYVEGTKDGIAAEIALQYNEGFASNVYSFANNINTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  K+   K+ + ++ G+D REG T+++SIK PDP+F  QTK KL +
Sbjct: 179 SGFKTALTRVINDYARKNGLVKEAETNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R+V ++  +     +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+++S
Sbjct: 239 SEARTVTDAVFSSHFETFLLENPAVARKIVEKGLMAARARMAAKKARELTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS RDP+ SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSRDPEISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITALGTGIG D FDI+K RYHK++I
Sbjct: 359 SNNEIRMIITALGTGIG-DEFDISKARYHKLVI 390


>gi|225165844|ref|ZP_03727622.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Opitutaceae bacterium TAV2]
 gi|224799915|gb|EEG18366.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Opitutaceae bacterium TAV2]
          Length = 617

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 168/614 (27%), Positives = 270/614 (43%), Gaps = 62/614 (10%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           + Y   SI+ L  L+ ++ RP MYIG     S    G++ ++ E +DN+IDE   G+   
Sbjct: 3   ADYTESSIKTLSPLEHIRLRPGMYIGRLGNGSHAEDGIYVLLKETIDNSIDEFTMGHGKK 62

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLH 121
           I V L+ D + TV D GRGIP             +I     ++ G K++ ++++ + GL+
Sbjct: 63  IEVYLD-DRTLTVRDYGRGIPLGK----------LIDCVSIINTGAKYDSETFQKAVGLN 111

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD- 180
           GVG   VNALS   +    R+G      F  G L              GT + F P  D 
Sbjct: 112 GVGQKAVNALSLSYRAEAIRDGQCKIAEFRCGKLVKDNKPQ-PTTERNGTIIEFTPDPDE 170

Query: 181 --IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
               +   F  + ++  L   ++LN  + +    K            + G++  ++    
Sbjct: 171 KLFGTEFRFRTEYIEEMLWNYAYLNRGLTLYFNGKP--------FRSENGLKDLLTKKLT 222

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                   P+      +   I++A+   + Y E    F N      GGTHL+  R  L  
Sbjct: 223 G------EPLYPMSHIEAPDIEVALTHGEHYGEEYYSFVNGQHTTMGGTHLAAFREGLVA 276

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS---- 354
            + ++ +K              D R+   + +SI++ +P F SQTK KL SS++      
Sbjct: 277 TLRNFFKK---------DYEAADVRQSIIAAVSIRVQEPVFESQTKTKLGSSDMGPKGPS 327

Query: 355 ---VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLTRRKGVLDIA 408
               +  F+   L  WL  +P  A+ I +K+  +   R      R       +K  L   
Sbjct: 328 VRQFITQFLQQNLDNWLHRNPEAAEAIKRKIEASERERKELSGIRSLAKERAKKASLHNK 387

Query: 409 --SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
                    D  ++  ++S +F+VEGDSA GS    R  + QA+  L+GK LN       
Sbjct: 388 KLRDCRVHLDSKDKRAEESSIFIVEGDSAAGSLTACRDVQTQAVFALKGKPLNTFGLTKK 447

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            +  ++E   L +AL    G     I  LRY+K+II TDADVDG HIR LLL+FF +  P
Sbjct: 448 IIYENEEFHLLQSALNIEEG-----IENLRYNKVIIATDADVDGMHIRLLLLSFFLQFFP 502

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI NG + I++ PL+ +   K   Y   E   +  L     + EI  F    G +S ++
Sbjct: 503 DLITNGHVSILETPLFRVRNKKQTIYCYSEAEKQSALHKLGQNAEITRF-KGLGEVSPSE 561

Query: 587 LRNFIDDALKIDKL 600
            ++FI D ++++ +
Sbjct: 562 FKDFISDNIRLEPV 575


>gi|4996778|dbj|BAA78434.1| subunit B protein of DNA gyrase [bacterium rJ5]
          Length = 277

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 156/280 (55%), Positives = 191/280 (68%), Gaps = 3/280 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L GY   +TVTL+ DGS  V+DNGRGIPT++  EEG S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGYCTEVTVTLHGDGSVAVTDNGRGIPTEIMPEEGRS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF    YKVSGGLHGVGVSVVNALS  L L I R+G  +   +  G 
Sbjct: 61  AAEVIMTILHAGGKFGGSGYKVSGGLHGVGVSVVNALSDKLLLDIYRQGRHHHQEYRLGE 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL   G   +  GT V F PS  IFS  + +YD L  RLRELSFLNS V+I L ++ 
Sbjct: 121 PQAPLAEQGDT-DKRGTAVRFYPSGKIFSNLEMHYDILARRLRELSFLNSGVRIVLREEA 179

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           S   RE    YKGGI AFV YL++ K P+  S + +    DN+ ++ A++WND Y ENV 
Sbjct: 180 SG--REDVFEYKGGISAFVEYLNKSKSPIHDSVLYMVAELDNVVVEAALQWNDSYTENVF 237

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           CFTNNIPQ+DGGTHL+G R+ALTR +  Y+E     KK+K
Sbjct: 238 CFTNNIPQRDGGTHLTGFRNALTRTLGEYLESQGIIKKEK 277


>gi|84310526|gb|ABC55411.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 188/392 (47%), Positives = 271/392 (69%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YK   GLHGVG SVVNALS+ L + + R+G I+  ++  G+    L + G   + TG
Sbjct: 1   GSGYKYPAGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K R  K++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARSPKVV 390


>gi|164456751|dbj|BAF97868.1| gyrase B subunit [Vibrio gazogenes]
          Length = 382

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 222/385 (57%), Positives = 296/385 (76%), Gaps = 4/385 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG+SVVNALS  + L I R G+IY  ++ +G+   PL   G     +GT V F
Sbjct: 1   VSGGLHGVGISVVNALSEKVALTIYRSGHIYTQTYHHGVPQAPLASVGDTE-KSGTLVRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PSS+ F+  +F+Y+ L  RLRELSFLNS V I LID+R  +       Y+GGI+ FVS+
Sbjct: 60  WPSSETFTNIEFHYEILAKRLRELSFLNSGVSIKLIDERDSKQ--DHFRYEGGIQEFVSH 117

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+R+K P+          R++ I++++AM+WND + E++ CFTNNIPQ+DGGTH++G R+
Sbjct: 118 LNRNKTPIHDRVFHFNQEREDGITVEVAMQWNDSFQESIFCFTNNIPQRDGGTHMAGFRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + ++++K   SKK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 178 ALTRTLNTFMDKEGFSKKEKTSTSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ + + LS +L E+P EAKI+  K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETAMGEKLSEFLIENPNEAKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYHK 499
            TLITALG GIG+D ++ +KLRYH 
Sbjct: 358 ATLITALGCGIGRDEYNPDKLRYHN 382


>gi|9971297|dbj|BAB12466.1| DNA gyrase B subunit [Oceanobacter kriegii]
          Length = 385

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 218/387 (56%), Positives = 283/387 (73%), Gaps = 2/387 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  LKL I+R G +YE  + +G+ D PL   G     +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLKLTIRRGGKLYEQEYTHGVPDYPLKEVG-VSETSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T VTFLPS + F+  +F+YD L  RLRELSFLNS V+I L D+R  +       ++GG+ 
Sbjct: 60  TAVTFLPSKETFTKTEFSYDYLAKRLRELSFLNSGVRIHLKDERVADKEN-LFEFEGGLA 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +FV YL+  K  L +         D IS+++AM+WND + E++ C+TNNIPQ+DGGTHL+
Sbjct: 119 SFVKYLNEGKTALNEVFHFNAEREDGISVEVAMQWNDTFQESIHCYTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+ +    KK+K S  G+D REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRAALTRSLNTYITQEGLDKKNKVSTTGNDAREGLTAIISVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +      +L E+P  AK +V K++DA+  R+AAR+AR++TRRKG L+IA L
Sbjct: 239 EVKPAVEQEMGRLFQEYLLENPQTAKDLVGKMIDAARAREAARKAREMTRRKGALEIAGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 299 PGKLADCQEKDPALSEVYLVEGDSAGGSAKQGRDRCTQAILPLKGKILNVEKARFDKMLS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRY 497
             E+GTLITALG GIG + F+ +KLRY
Sbjct: 359 FAEVGTLITALGCGIGCEEFNPDKLRY 385


>gi|189909567|gb|ACE60643.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 189/387 (48%), Positives = 270/387 (69%), Gaps = 3/387 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    L + G   + TGT   F
Sbjct: 1   VSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TGTTTHF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           +P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V 
Sbjct: 60  VPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVE 119

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++
Sbjct: 120 YLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKT 179

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R+
Sbjct: 180 GLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 239

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           + ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKL
Sbjct: 240 ITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKL 299

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+
Sbjct: 300 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 359

Query: 475 GTLITALGTGIGQDSFDINKLRYHKII 501
            ++ITALGTGIG+D F++ K R  K  
Sbjct: 360 RSMITALGTGIGED-FNLEKARTTKCH 385


>gi|126035242|gb|ABN72374.1| gyrase B subunit [Enterobacter cloacae]
          Length = 380

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 230/383 (60%), Positives = 296/383 (77%), Gaps = 4/383 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTMVRF 59

Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV 
Sbjct: 60  WPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+
Sbjct: 118 YLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 178 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRY 497
            TLITALG GIG+D ++ +KLRY
Sbjct: 358 ATLITALGCGIGRDEYNPDKLRY 380


>gi|218681055|ref|ZP_03528952.1| DNA gyrase subunit B [Rhizobium etli CIAT 894]
          Length = 302

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 146/294 (49%), Positives = 206/294 (70%), Gaps = 5/294 (1%)

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           RTLLLTFFFRQMP LI  G LYI +PPLY ++RGKS+QY+KDE++LE+YLI+Q L +   
Sbjct: 10  RTLLLTFFFRQMPELIERGHLYIAQPPLYKVSRGKSVQYLKDEKALEEYLISQGLEDAAL 69

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEIN 631
               S  V +  DLR  I DAL++  L+ + +  +++  +EQA I+G  N +   D    
Sbjct: 70  KLG-SGEVRTGQDLREVILDALRMRALLDNLHSRYNRAVVEQAAIAGALNADFVSDPARA 128

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690
            ++AS++A+RL+ IAE++E+ W G +  +  +  +R+ RGV+E  VL+ + I S  +++ 
Sbjct: 129 RAVASEVASRLDIIAEETERGWQGDLTSDGGLRFERMVRGVREIVVLDMALIGSSDARHI 188

Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750
              + R++E Y T  SL      ++I+GP +LLD IF+ GRKG++MQRYKGLGEMNA QL
Sbjct: 189 DQLTARLKEIYQTPPSLHRREGDVEISGPRALLDAIFATGRKGLTMQRYKGLGEMNAEQL 248

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           WETTL+P+ RSLL+VK+ DA+ AD LF+RLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 249 WETTLDPNVRSLLQVKVNDATDADGLFARLMGDEVEPRREFIQDNALSVANLDI 302


>gi|19909579|dbj|BAB86985.1| DNA gyrase subunit B [Brevundimonas intermedia]
          Length = 397

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 254/397 (63%), Positives = 311/397 (78%), Gaps = 7/397 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND---- 168
           SYKVSGGLHGVGVSVVNALS WL+L+I R+G  ++M F  G     LV+TG A       
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLELKIYRDGKAHQMRFERGDTVKSLVITGDAPIREDTG 60

Query: 169 ---TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              +GTEVTF PS   FS  DF+  TL+HRLREL+FLNS V I L D+R  EP E+ + Y
Sbjct: 61  KPLSGTEVTFYPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLADQRHAEPVEMILHY 120

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+EAFV +LD+ K P+++  I I+G ++ I +DLA+ WND YHE +LCFTNNIPQ+DG
Sbjct: 121 EGGVEAFVRHLDKSKTPILKDVIVIRGKKEGIELDLALWWNDSYHETMLCFTNNIPQRDG 180

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHLS  R++LTR +  Y+E S   KK+K SV G+D REG T VLS+K+PDP+FSSQTK+
Sbjct: 181 GTHLSAFRASLTRVMGGYIESSGAGKKEKVSVTGEDAREGLTCVLSVKVPDPKFSSQTKD 240

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR  VE+  ++GLS W EEHP+EAK IV K+++A+  R+AAR+ARDLTRRK  L
Sbjct: 241 KLVSSEVRPAVEALCSEGLSTWFEEHPVEAKQIVAKIIEAASAREAARKARDLTRRKSAL 300

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +I+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERARF
Sbjct: 301 EISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARF 360

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D+MLSS  IGTLI ALGTGIG+D F+ +KLRYHKII+
Sbjct: 361 DRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 397


>gi|117650769|gb|ABK54359.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 388

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 245/388 (63%), Positives = 298/388 (76%), Gaps = 7/388 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-------TG 170
           GGLHGVGVSVVNALS WL+L I R+G  + + F  G     L V G A          TG
Sbjct: 1   GGLHGVGVSVVNALSDWLELVIYRDGKKHSVRFERGETVRSLAVVGDAPMREDKGRLLTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTF PS   FS  DF+  TL+HRLREL+FLNS V I L D R  EP EI + Y+GG+E
Sbjct: 61  TEVTFFPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLSDHRGAEPIEIMLHYEGGVE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +LD+ K P+++  I I+G +D I +DLA+ WND YHE +LCFTNNIPQ+DGGTHLS
Sbjct: 121 AFVRHLDKSKTPILKDVIVIRGQKDGIELDLALWWNDSYHETMLCFTNNIPQRDGGTHLS 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
             R++LTR + SY+E S  +KK+K +  G+D REG T VLS+K+PDP+FSSQTK+KLVSS
Sbjct: 181 AFRASLTRVMGSYIESSGLAKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 240

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR  VES  ++GL+ W EEHP+EAK+IV K+++A+  R+ AR+ARDLTRRK  L+I+SL
Sbjct: 241 EVRPAVESLCSEGLATWFEEHPVEAKMIVSKIIEAASAREXARKARDLTRRKLALEISSL 300

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERARFD+MLS
Sbjct: 301 PGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLS 360

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYH 498
           S  IGTLI ALGTGIG+D F+ +KLRYH
Sbjct: 361 SDLIGTLILALGTGIGRDDFNADKLRYH 388


>gi|154297045|ref|XP_001548951.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
 gi|150843138|gb|EDN18331.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
          Length = 1823

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 144/719 (20%), Positives = 269/719 (37%), Gaps = 67/719 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GL 41
             + +    +  Q L  L+ + KRP  YIG  +                         GL
Sbjct: 140 KPKKTKTSTEQYQKLTQLEHIIKRPDTYIGSVEKTEQTMWVFNSENKEMELRKVTFVPGL 199

Query: 42  HHMIYEVLDNAIDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAA 96
           + +  E++ NA D     +       I V ++ + G  +V ++GRGIP ++H++E I   
Sbjct: 200 YKIFDEIMVNAADNKQNDANM---KNIKVVVDREKGEISVENDGRGIPVEIHEKEKIYIP 256

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGI 154
           E+I   L  G  ++    K +GG +G G  + N  S+   L  +    G  Y+ ++ + +
Sbjct: 257 EMIFGHLLTGSNYDDDEAKTTGGRNGYGAKLCNIFSTEFTLETQDSNSGKRYKQTWTDNM 316

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLI 211
                    S+ N   T VTF P    F +   + D    ++ R+ +++     V++ L 
Sbjct: 317 SKMGKARISSSKNADFTRVTFTPDWTKFKMTGIDDDFEAMVKRRVYDMAGTVKGVKVYLN 376

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
                   ++       + A     +R       + + ++ S+ +   ++    +DG  +
Sbjct: 377 ----GAQIKLDFKKYIEMYAKAINKERGLDDASANSVIVEDSKGHPKWEVGFAVSDGSFQ 432

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N+I    GGTH++ +   +  ++   V+K          +  +  R      ++
Sbjct: 433 QV-SFVNSIATTSGGTHVNYIADQICDKLLEVVKKRN---PKGALLKANQVRNHIFLFVN 488

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             + +P F+SQTKE+L + + +   +  + +       +   + + +   +  A+   D 
Sbjct: 489 CLITNPAFTSQTKEQLTTRKPQFGSKCVLTEE----FLKKIGKTEAVENILNFAAKKADL 544

Query: 392 ARRA----RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---S 444
                   R        L  A+L G       +   +  L L EGDSA G A  GR    
Sbjct: 545 ELAKSDGNRRSRMNNPKLVDANLAG------TKRGHECTLILTEGDSAKGLAVAGRAVLD 598

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            +   + PLRGK+LNV  A  D++  + EI  +   LG        D   LRY  ++IM 
Sbjct: 599 PDRIGVFPLRGKLLNVRDASHDQIAKNAEIQNIKQFLGLKHKTTYKDTLGLRYGHLMIMA 658

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYL 563
           D D DG+HI+ LL+ F   Q PSL+     +     P+  + +G +        +L  + 
Sbjct: 659 DQDHDGSHIKGLLINFLQVQYPSLLKLPEFFREFITPIVKVWKGPN---PNKPTNLRSFF 715

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
                 E  E   + K    K                  +   +  +    +     + +
Sbjct: 716 TMPEYEEWKESNNNDKSWKHKYYKGLGTSKPEDAQIYFSNLDVHLREFETIKPEEEEMLD 775

Query: 624 CESDQEINVSLASKLANRL---NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
               ++   S  + L N +            ++   IN   IL            V++G
Sbjct: 776 LAFSKKKADSRKTWLGNFIPGTYLDHTDKMLTYDNFINKELILFSMADNMRSIPSVIDG 834


>gi|327309598|ref|XP_003239490.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
 gi|326459746|gb|EGD85199.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
          Length = 1674

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 142/694 (20%), Positives = 250/694 (36%), Gaps = 41/694 (5%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           +         ++  Q +  L+ + KRP  YIG  +                         
Sbjct: 117 TTETVEGGGSSEKYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVP 176

Query: 40  GLHHMIYEVLDNAIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D          I VTL+ + G  +V +NGRGIP ++HK+E I   E
Sbjct: 177 GLYKIFDEILVNAADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPE 236

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGIL 155
           +I   L     +N    KV+GG +G G  + N  S    +     ++   +++++ N + 
Sbjct: 237 LIFGHLLTSSNYNDMQEKVTGGRNGYGAKLCNIFSKEFTVETADSKQKKKFKLTWTNNMS 296

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
                       D  T+VTF P    F +   + D      R +  +  +   ++    +
Sbjct: 297 TMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGT 356

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
             P +    Y       +                I     +   ++    +DG  + V  
Sbjct: 357 RIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-S 415

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F N+I    GGTH++ +   +        +      K   ++     +      ++ ++ 
Sbjct: 416 FVNSIATTSGGTHVNYISDQI---CNKLADALKKKNKTGATLKATQIKNHIFLFVNSQIV 472

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P F+SQTKE+L +   +   +  V+D     + +  +   I+      A  +       
Sbjct: 473 NPAFTSQTKEQLTTRPSQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGN 532

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILP 452
           R        L  A+  G       +D     L L EGDSA G A  GR+    +   + P
Sbjct: 533 RRSRMNNPKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFP 586

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGK+LNV  A  D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+H
Sbjct: 587 LRGKLLNVRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSH 646

Query: 513 IRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           I+ LL+ +     P+L+   GFL     P+  + +G        +         +     
Sbjct: 647 IKGLLINYLQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHTKSFFTLPEYEEWKEAH 706

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
                  K         +  D  +    L +     H     E  +I   F+ +   E  
Sbjct: 707 AHDKKWQKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER- 765

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
                +            + ++   IN   IL  
Sbjct: 766 KEWLRQFKPGTYLDHSTDQITYTDFINKELILFS 799


>gi|6644325|gb|AAF21010.1|AF208259_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 228/380 (60%), Positives = 290/380 (76%), Gaps = 3/380 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLR 496
           LITALG GIG+D ++ +KLR
Sbjct: 358 LITALGCGIGRDEYNPDKLR 377


>gi|3021640|dbj|BAA25340.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 220/385 (57%), Positives = 294/385 (76%), Gaps = 4/385 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+          R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+L
Sbjct: 118 TNKTPVNSQVFHFSVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N   S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKII 501
           LITALG GIG++ ++I+KLRYH II
Sbjct: 358 LITALGCGIGREEYNIDKLRYHNII 382


>gi|49065931|gb|AAT49056.1| gyrase B [Capnocytophaga cynodegmi]
          Length = 421

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 198/422 (46%), Positives = 275/422 (65%), Gaps = 14/422 (3%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVS VNALS  L   + REG +Y+  +  G    P+   G   +  GT V
Sbjct: 1   YKVSGGLHGVGVSCVNALSVHLTATVSREGKVYQQEYSRGKALYPVKQVGDT-DKRGTTV 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGG 228
           TFLP ++IF     + YDTL  R+REL+FLN  + I+L D R+ +          + + G
Sbjct: 60  TFLPDTEIFQQTTEYKYDTLAARIRELAFLNKGITINLTDLRNKDEKGNYISEKFYSENG 119

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +  FV YLD  +  ++   I ++G +  I +++AM +ND ++EN+  + NNI   +GGTH
Sbjct: 120 LTEFVKYLDASRPAIIGRVIAMEGEKAGIPVEVAMIYNDSFNENLYSYVNNINTSEGGTH 179

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVI------GDDCREGFTSVLSIKMPDPRFSSQ 342
           L G R  LTR + SY +KS   +K  +         GDD REG T+++S+K+ +P+F  Q
Sbjct: 180 LQGFRMGLTRTLKSYADKSGILEKASKDKKNPIEIVGDDFREGLTAIISVKVAEPQFEGQ 239

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL + EV + V   V+D L A+LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK
Sbjct: 240 TKTKLGNREVTAAVSQAVSDMLEAYLEENPNDAKAIVEKVILAAQARQAARKAREMVQRK 299

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
            V+    LPGKL+DCSE+DP+K ELFLVEGDSAGG+AK GR +  QAILPL+GKILNVE+
Sbjct: 300 TVMSSGGLPGKLSDCSEQDPEKCELFLVEGDSAGGTAKSGRDKNYQAILPLKGKILNVEK 359

Query: 463 ARFDKMLSSQEIGTLITALGT--GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             F K+L ++EI  + +ALG        + ++ KLRYHK++IM DADVDG+HI TL+LTF
Sbjct: 360 TNFVKVLDNEEISNIYSALGVYYDPEIKALNLEKLRYHKVVIMCDADVDGSHITTLILTF 419

Query: 521 FF 522
           FF
Sbjct: 420 FF 421


>gi|2196842|gb|AAB80838.1| DNA gyrase beta-subunit [Shewanella sp. MR-4]
          Length = 419

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 232/425 (54%), Positives = 311/425 (73%), Gaps = 10/425 (2%)

Query: 97  EVIMTRLHAGGKFN---QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           EVIMT L    KF       Y        VGV VVNALS  L+L I+REG ++E  + +G
Sbjct: 1   EVIMTVLCRVCKFEVLTNDVY---VDRPRVGVPVVNALSKKLQLTIRREGKVHEQFYTHG 57

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           + D P+ V G A   TGTE+ F PS   FS  +F+++ L  R+RELSFLNS V I L+D+
Sbjct: 58  VPDEPIKVIGDAT-KTGTEIRFWPSEQTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDE 116

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHEN 272
           R  +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY E+
Sbjct: 117 RDNKN--EFFKYEGGISAFVDYLNRNKTPVNKEVFHFMQEREDGITVEVAMQWNDGYQES 174

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           + CFTNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+
Sbjct: 175 IFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISV 234

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVS+EV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AA
Sbjct: 235 KVPDPKFSSQTKDKLVSNEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAA 294

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++T RKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 295 RKAREMTLRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILP 354

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GKILNVE+ARFD MLSSQE+ TLITALG GIG   ++ +K RY+ +++MTDADVDG+H
Sbjct: 355 LKGKILNVEKARFDXMLSSQEVATLITALGCGIGDVVYNPDKTRYNYVVVMTDADVDGSH 414

Query: 513 IRTLL 517
           I TLL
Sbjct: 415 ILTLL 419


>gi|114145437|ref|NP_001041456.1| transcription factor [Ciona intestinalis]
 gi|93003262|tpd|FAA00214.1| TPA: transcription factor protein [Ciona intestinalis]
          Length = 1538

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 135/666 (20%), Positives = 245/666 (36%), Gaps = 65/666 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 25  YQKKTQLEHILLRPDTYIGSVEPVTQAMWVYDEGEGMVNREITFVPGLYKIFDEILVNAA 84

Query: 54  DESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I +T+N +    +V ++G+GIP   HK E +   E+I   L     ++ 
Sbjct: 85  DNKQRDPKMSTIKITINPEKNLISVWNDGKGIPVVEHKGEKMYVPEMIFGHLLTSSNYDD 144

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIK-REGNIYE-MSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+  K+    ++  +Y   S+   +         S     
Sbjct: 145 DDKKVTGGRNGYGAKLCNIFSTKFKVETASKDEKMYFSQSWSKNMSKAHDKKIVSYEKPD 204

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T VTF P  + F ++  + DT+     R  +++   S V++ L   +            
Sbjct: 205 FTCVTFHPDLEKFHMESLDKDTVALLSRRAYDIAGSTSGVKVFLNGSK---------LPV 255

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
              + +V       +     P ++   + N   ++ +  +D   + V  F N+I    GG
Sbjct: 256 KNFKDYVQLYVAQMRDDNGEPFKVIHEQVNPRWEICLTSSDKGFQQV-SFVNSIATTKGG 314

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H   +   +T+++   V++     K    V     +      ++  + +P F SQTKE 
Sbjct: 315 RHTDYVIDQVTKKLIEVVKRKN---KGGVEVKPFQIKNHCWLFVNCLIENPTFDSQTKEN 371

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +     +   +  + +               IV  +++    +  ++  +    +   L 
Sbjct: 372 MTLQAKKFGSKCNLTEKFLKMASSSG-----IVDNIMNWVKFKAQSQLQKKSAGKSNKLK 426

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERA 463
                    D   R      L L EGDSA   A  G S   R+   + PLRGK+LNV  A
Sbjct: 427 GVPKLDDANDAGTRHSLDCTLILTEGDSAKTLAVSGLSVIGRDKYGVFPLRGKLLNVRDA 486

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLTF 520
              +++ + EI  +I  +G    +     +    LRY K++IMTD D DG+HI+ LL+ F
Sbjct: 487 SHKQIMDNIEINHIIKIMGLKYNKKYETDDDLKSLRYGKLMIMTDQDHDGSHIKGLLINF 546

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDS 578
                P ++    L     P+  +T+G  +         ED+   I    S +++ +   
Sbjct: 547 IHTNWPKMLQRRMLEEFITPIVKVTKGSQVLCFYTIPEFEDWQNTIENPKSWKVKYYKGL 606

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
               SK                  D   +  +     A   G  +   +++        L
Sbjct: 607 GTSTSKE-----------AKSYFADMLRHRVRFRYSGAGDDGCIDMAFNRKRADDRKEWL 655

Query: 639 ANRLNF 644
            N +  
Sbjct: 656 TNFMEE 661


>gi|3021632|dbj|BAA25336.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 221/385 (57%), Positives = 294/385 (76%), Gaps = 4/385 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLILTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+L
Sbjct: 118 TNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N   S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKII 501
           LITALG GIG++ ++I+KLRYH II
Sbjct: 358 LITALGCGIGREEYNIDKLRYHNII 382


>gi|324331796|gb|ADY38684.1| DNA gyrase subunit B [Ignatzschineria sp. NML 95-0260]
          Length = 376

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 220/379 (58%), Positives = 281/379 (74%), Gaps = 3/379 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALSS LKL I + G I+E  +  G  D PL   G   +  GT V F P
Sbjct: 1   GGLHGVGVSVVNALSSKLKLTIYKHGKIHEQEYTVGEPDYPLREIGET-DKNGTTVYFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S D+F+  DF +D L  RLREL+FLNS ++I L D+R+   RE    Y+GGI+A+V  ++
Sbjct: 60  SKDVFTDIDFEFDILFKRLRELAFLNSGIRIVLKDERTD--REEIFEYEGGIKAYVELIN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +++  +          RDNI++++A +W DGY E+V C+TNNIPQ DGGTHL+G R+A+T
Sbjct: 118 KNRNEIHPDIFYCDCQRDNINVEIAFQWTDGYQESVFCYTNNIPQSDGGTHLAGFRAAMT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R +  Y++     KK K +  GDD REG T+++S+K+P P+FSSQTKEKLVSSEVR VV+
Sbjct: 178 RTLNRYMQDEGLLKKVKVATTGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPVVD 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + + L  +L EHP +AK I  K++DA+M R+AAR+AR+ TRRK  LDIA LPGKLADC
Sbjct: 238 SVLAERLEQFLLEHPDDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP +SELF+VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFD+M+SS EIGTL
Sbjct: 298 QEKDPAQSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMISSAEIGTL 357

Query: 478 ITALGTGIGQDSFDINKLR 496
           ITALG GIG+D FD +KLR
Sbjct: 358 ITALGCGIGRDEFDPDKLR 376


>gi|302122522|gb|ADK92930.1| DNA gyrase subunit B [Geobacillus subterraneus]
          Length = 394

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 195/386 (50%), Positives = 266/386 (68%), Gaps = 4/386 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS WL++ + R+G I+   +  G     L V G   + TGT   F P  
Sbjct: 12  LHGVGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVVGET-DRTGTTTRFKPDP 70

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    F+Y+TL  RLREL+FLN  ++I L D+R    +     Y+GGI ++V +L+R
Sbjct: 71  EIFTETTEFDYETLATRLRELAFLNRGLKIILTDERVDNRKNEYF-YEGGIRSYVRHLNR 129

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI I G RD I++++A+++NDGY  N+  F NNI   +GG H SG + ALTR
Sbjct: 130 TREVLHEEPIYITGERDGIAVEIALQYNDGYTSNIYSFVNNIHTYEGGMHESGFKMALTR 189

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K +  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++
Sbjct: 190 IINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDA 249

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L EHP  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS
Sbjct: 250 VFSEQFETFLLEHPAVARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCS 309

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+LS+ E+  +I
Sbjct: 310 SRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAII 369

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMT 504
           TALGTGIG+D FDI+K RYHK+IIMT
Sbjct: 370 TALGTGIGED-FDISKARYHKVIIMT 394


>gi|3021630|dbj|BAA25335.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 220/385 (57%), Positives = 294/385 (76%), Gaps = 4/385 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+L
Sbjct: 118 TNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKII 501
           LITALG GIG++ ++I+KLRYH II
Sbjct: 358 LITALGCGIGREEYNIDKLRYHNII 382


>gi|260941161|ref|XP_002614747.1| hypothetical protein CLUG_05525 [Clavispora lusitaniae ATCC 42720]
 gi|238851933|gb|EEQ41397.1| hypothetical protein CLUG_05525 [Clavispora lusitaniae ATCC 42720]
          Length = 760

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 150/711 (21%), Positives = 262/711 (36%), Gaps = 55/711 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT----------DGES------------GLHHMIYEVL 49
           ++  Q L  L+ + KRP  YIG            D ES            GL+ +  E+L
Sbjct: 43  SEQYQKLSQLEHILKRPDTYIGSVEKNKVEMWCFDSESESMVFKEVTIVPGLYKIFDEIL 102

Query: 50  DNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I V ++  + + +V ++GRGIP ++H +E +   E+I   L    
Sbjct: 103 VNAADNKIRDPSMKNIKVNVDAPNNTISVMNDGRGIPVEIHTKEQMYIPEMIFGNLLTSS 162

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGI-LDNPLVVTGS 164
            ++    KV+GG +G G  + N  S+   +    +  G +Y  ++ + +       +T  
Sbjct: 163 NYDDDQKKVTGGRNGFGAKLCNIFSTEFTVETADQNTGKLYIQTWTDNMSKVGKPKITKV 222

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREI 221
                 T+VTF P    F++   + D L     R+ +L        I L +K+       
Sbjct: 223 KNKKEYTKVTFKPDLTKFNMDALDEDILAVLNRRVYDLCGTVKDCNIYLNEKKLAIRNFK 282

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                                   S +     + N   +LA   +DG    V  F N+I 
Sbjct: 283 GYVEMYVKAIQARSPQIAGDVTAPSIVY---EQVNERWELAFAVSDGNFNQV-SFVNSIA 338

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH+  +   +  ++ + + K     K K  +  +  +      ++  + +P F+S
Sbjct: 339 TTAGGTHVKYVTDQIIDKLLAELNKQ-EKGKKKLMIKANQIKNHIFIFVNCLIENPAFTS 397

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE+L +   +   +      ++    +  L    I + +       +    ++D  +R
Sbjct: 398 QTKEQLTTRASQFASKQKDKVTITDQFIKKIL-KTNIRETIQSIVDANEGKALSKDDGKR 456

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGK 456
           +  +   +          ++  K  L L EGDSA      G A  GR        PLRGK
Sbjct: 457 RTRIKDQAKLVDANKAGTKEGHKCTLILTEGDSAKSLAVAGMAVIGRD--YYGCFPLRGK 514

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADVDGAHIR 514
           +LNV  A  +++  + EI  L   +G    +     +I  LRY  ++IMTD D DG+HI+
Sbjct: 515 LLNVRDASTEQIAKNAEITALKQIIGLQHRKHYTLENIKDLRYGHVMIMTDQDHDGSHIK 574

Query: 515 TLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDY-LINQSLSEEI 572
            LL+ FF    P L++  GFL     P+  +T     +   +  S        +    E 
Sbjct: 575 GLLINFFESSFPGLLNIPGFLLEFITPIVKVTIKGRGRQAANVISFYSMPEFEEWRDTEG 634

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                +            +D      KL K     H     E  +I   F+ +   +   
Sbjct: 635 TNCRWTHKYYKGLGTSTSVDAVEYFSKLDKHLKEFHALESDEPPLIELAFSKKKADDR-K 693

Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683
                        ++         IN   ILV     G    +++    + 
Sbjct: 694 EWLQGFQPGTFLDSDMKVIPIKNFINEELILVF---HG----WIISDPFLH 737


>gi|11078705|dbj|BAB17357.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 389

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 221/392 (56%), Positives = 295/392 (75%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSG LHGVGVSVVNALS  L+L I+R   ++E  + +G+   PL   G   + +G
Sbjct: 1   DNTYKVSGRLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F PS + FS   F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++
Sbjct: 60  TEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K  + Q     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKSAVNQVFHFNVQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SSQE+GTLITALG GIG++ ++++KLRYH II
Sbjct: 358 SSQEVGTLITALGCGIGREEYNMDKLRYHNII 389


>gi|3985982|dbj|BAA34867.1| DNA gyrase subunit B protein [Nitrosomonas sp. HPCv101]
          Length = 389

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 237/392 (60%), Positives = 299/392 (76%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS WL+L I R+GNI+++ F +G+   PL +TG      G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLRLTIYRKGNIHQIEFRDGVAVAPLAITGQTEKQ-G 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV FL S  IF    ++YD    RLRELSFLN  ++I L D+R  + RE    + GGI 
Sbjct: 60  TEVHFLASKLIFGDITYHYDIFARRLRELSFLNYGIKIRLADRR--DNREEIFAFSGGIR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++R K  L  +    +G +D+I++++AM+WND Y E VLCFTNNIPQKDGGTHL+
Sbjct: 118 NFVEYINRTKTVLHPNIFYAKGMKDDITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLT 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GLR+A+TR + +Y+EK+  +KK K    GDD REG T VLSIK+ +P+FSSQTKEKLVSS
Sbjct: 178 GLRAAMTRTLNNYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR VVE  V+  LS +L E+P EAKII  K+++A+  R+AAR+AR+LTRRKGVLD   L
Sbjct: 238 EVRPVVEEVVSHKLSDFLLENPNEAKIICNKIIEAARAREAARKARELTRRKGVLDSMGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DPK  EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++S
Sbjct: 298 PGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQEI  LITALGTGIG+D ++++KLRYH+III
Sbjct: 358 SQEIVALITALGTGIGKDEYNLDKLRYHRIII 389


>gi|71018835|ref|XP_759648.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
 gi|46099406|gb|EAK84639.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
          Length = 1518

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 145/682 (21%), Positives = 260/682 (38%), Gaps = 61/682 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +++ Q L  L+ + KRP  YIG  +  +                      GL+ +  E+L
Sbjct: 97  SETYQKLSQLEHILKRPDTYIGSVEKHTEKLWVFDKSKKQMVYRETTYVPGLYKIFDEIL 156

Query: 50  DNAIDE-SLEGYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  + +     + V +N  +GS  V +NG GIP ++H++E +   E+I   L    
Sbjct: 157 VNAADNKARDSNMTALKVEINREEGSIMVWNNGHGIPVEMHEKERVYIPELIFGHLLTSS 216

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVTGS 164
            ++    KV+GG +G G  + N  S+   +     +    Y+ +F   +       +T  
Sbjct: 217 NYDDNEAKVTGGRNGYGAKLANIYSTEFTVETADSKNQCKYKQTFTKNMHEKGKPKITKH 276

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           + ND  T +TF P   +F +   +      +  R+ +++     ++++L  +        
Sbjct: 277 SKNDEYTSITFKPDLALFGMDAIDDHMEALMLKRVYDMAGTVKGIKVTLNGELLKIKNFK 336

Query: 222 TMFYK--------GGIEAFVSYLDRHKK---PLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                        GG                    + I         + ++A   +DG  
Sbjct: 337 QYVEMYVSAINELGGKADNGEEDAAGLPTSAAPKPAIIYESTVDKGRNWEVAFAVSDGEF 396

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
             V  F NNI    GG H+  +   +  ++  +V+K   + K   +      R+     +
Sbjct: 397 RQV-SFVNNIATIKGGKHVDHVADQVISRLIEHVKKDKHTGKVMPNQ----VRQQLWVFV 451

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-IVKKVLDASMVR 389
           + ++ +P F  QTK      E  ++ +S      +   E      K  +V  ++  +  +
Sbjct: 452 NCQIVNPTFDGQTK------ETLTLKQSAFGSKWTLTDEFARKVIKSGVVDNIVSFARFK 505

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRS 444
                 +    ++  +          +   R  K   L L EGDSA      G  + GR 
Sbjct: 506 QDQALKKTDGHKRTRITNIPKLEDANNAGGRKAKDCTLILTEGDSAKSLAVAGIVEVGRD 565

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
             N  + PLRGK+LNV  A  D+++ + EI  +   LG   G+   D N LRY  I+IMT
Sbjct: 566 --NYGVFPLRGKLLNVREASHDQIMKNAEIKAIKEILGLQHGKQYLDTNSLRYGSIMIMT 623

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           D D DG+HI+ L++ F     PSL+   GFL     P+    +GK           E + 
Sbjct: 624 DQDHDGSHIKGLIINFLDHFYPSLLKIPGFLVEFITPIVRCRKGKQDISFFTIPEYETWR 683

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
              +  +   +        S++        AL+  KL  D   + D+  I+ A      +
Sbjct: 684 DAHNGGKGWHIKYYKGLGTSESQDAKRYFRALEKHKLAFDVTRDGDRELIDLAFNKKKAD 743

Query: 624 CESDQEINVSLASKLANRLNFI 645
              +        + L +  + I
Sbjct: 744 DRKEWLRQFRPGTYLDHNTDRI 765


>gi|82568135|dbj|BAE48502.1| DNA gyrase B [Seinonella peptonophila]
          Length = 389

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 194/393 (49%), Positives = 271/393 (68%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YK SGGLHGVGVSVVNALS  L + +KR+G I+   +  GI  + L V G A     
Sbjct: 1   NGGYKFSGGLHGVGVSVVNALSESLAVEVKRDGKIHRQEYARGIPQSSLQVVGEAEGTG- 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTL-QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T  TF P  +IF        T+ Q+RLREL+FLN+ ++I   D R+ +  E      GGI
Sbjct: 60  TTTTFRPDPEIFKETTIFDATILQNRLRELAFLNAGLRIIFKDLRTEQEAEYKY--DGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV YL+R+++ L   PI + G RD   +++A+++ND Y   +L + NNI   +GGTH 
Sbjct: 118 SSFVEYLNRNRETLHAPPIYVTGERDTTQVEVALQYNDSYSSRILSYANNIHTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  ++   K+++ ++ GDD REG T+++S+K+ DP+F +QTK KL +
Sbjct: 178 AGFKSALTRVINDYARRNNLLKENQSNLTGDDVREGLTAIISVKIMDPQFEAQTKIKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR++ E  +N+ +  +LEE+P  AK ++ K + AS  R+AAR+AR+LTRRK  L++++
Sbjct: 238 SEVRTITEQLLNEKIQIYLEENPAVAKKVINKAMMASRAREAARKARELTRRKNALEVSA 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ R   +SELF+VEGDSAGG+AKQGR R  QAILPL+GKILNV +AR D++L
Sbjct: 298 LPGKLADCTSRKADESELFIVEGDSAGGTAKQGRDRMFQAILPLKGKILNVGKARLDRVL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI T+ITALGTGIG+D F ++K RYHKIII
Sbjct: 358 SNDEIRTIITALGTGIGED-FQLDKARYHKIII 389


>gi|302122530|gb|ADK92934.1| DNA gyrase subunit B [Geobacillus subterraneus]
          Length = 394

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 195/386 (50%), Positives = 266/386 (68%), Gaps = 4/386 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS WL++ + R+G I+   +  G     L V G   + TGT   F P  
Sbjct: 12  LHGVGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVVGET-DRTGTTTRFKPDP 70

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    F+Y+TL  RLREL+FLN  ++I L D+R    +     Y+GGI ++V +L+R
Sbjct: 71  EIFTETTEFDYETLATRLRELAFLNRGLKIILTDERVDNRKNEYF-YEGGIRSYVRHLNR 129

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI I G RD I++++A+++NDGY  N+  F NNI   +GG H SG + ALTR
Sbjct: 130 TREVLHEEPIYITGERDGIAVEIALQYNDGYTSNIYSFVNNIHTYEGGMHESGFKMALTR 189

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K +  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++
Sbjct: 190 IINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDA 249

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L EHP  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS
Sbjct: 250 VFSEQFETFLLEHPAVARKIVEKGMXAARARLAAKKARELTRRKSALEISNLPGKLADCS 309

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+LS+ E+  +I
Sbjct: 310 SRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAII 369

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMT 504
           TALGTGIG+D FDI+K RYHK+IIMT
Sbjct: 370 TALGTGIGED-FDISKARYHKVIIMT 394


>gi|148536430|gb|ABQ85767.1| DNA gyrase subunit B [Aliivibrio fischeri]
          Length = 382

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 225/384 (58%), Positives = 295/384 (76%), Gaps = 3/384 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  ++L I R G I++  + +G  + PL V G   + TGT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + F+   F Y+ L  RLRELSFLNS V I L D R  E +     Y+GGI+AFV +L
Sbjct: 60  PSEETFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFMYEGGIQAFVQHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA
Sbjct: 119 NRNKTPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 LTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDIA LPGKLA
Sbjct: 239 VESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A FDKMLSS+E+G
Sbjct: 299 DCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKASFDKMLSSREVG 358

Query: 476 TLITALGTGIGQDSFDINKLRYHK 499
           TLITALG GIG+D ++ +KLRYH 
Sbjct: 359 TLITALGCGIGRDEYNPDKLRYHN 382


>gi|332800597|emb|CBY89788.1| GyrB protein [Flavobacterium omnivorum]
          Length = 398

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 178/394 (45%), Positives = 253/394 (64%), Gaps = 7/394 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPL 159
           T++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS--- 215
              G      GT VTF P   IF+    ++YDTL  R+RELS+LN  + I+  DKR    
Sbjct: 61  KQIGETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSYLNKGITITFTDKRELDK 119

Query: 216 -PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                        G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+ 
Sbjct: 120 DGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEIPVEVALIYNTSYTENIF 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+
Sbjct: 180 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA++
Sbjct: 240 QEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAKK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPLR
Sbjct: 300 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           GKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 360 GKILNVEKAMHHKVFENEEIRNIFTALGVTIGTE 393


>gi|156063624|ref|XP_001597734.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980]
 gi|154697264|gb|EDN97002.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1846

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 142/713 (19%), Positives = 268/713 (37%), Gaps = 55/713 (7%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GL 41
             + +    +  Q L  L+ + KRP  YIG  +                         GL
Sbjct: 145 KPKKTKTSTEQYQKLTQLEHIIKRPDTYIGSVEKTEQTMWVFNSETKEMELRKVTFVPGL 204

Query: 42  HHMIYEVLDNAIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           + +  E++ NA D          + V ++ + G  +V ++GRGIP ++H++E I   E+I
Sbjct: 205 YKIFDEIMVNAADNKQNDPNMKNLKVVVDREKGEISVENDGRGIPVEIHEKEKIYIPEMI 264

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDN 157
              L  G  ++    K +GG +G G  + N  S+   L  +    G  Y+ ++ + +   
Sbjct: 265 FGHLLTGSNYDDDEAKTTGGRNGYGAKLCNIFSTEFTLETQDSNSGKRYKQTWADNMSKM 324

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKR 214
                 S+ N   T VTF P    F +   + D    ++ R+ +++ +   V++ L    
Sbjct: 325 GKAKISSSKNADFTRVTFTPDWKKFKMTGIDDDFEAMVKRRVYDMAGVVKGVKVYLN--- 381

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                ++       + A     +R  +    + + ++ S+ +   ++    +DG  + V 
Sbjct: 382 -GTQIKLDFKKYIEMYAKAINKERGSEDTSANTVIVEDSKGHPKWEVGFAVSDGSFQQV- 439

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N+I    GGTH++ +   +  ++   V+K          +  +  R      ++  +
Sbjct: 440 SFVNSIATTSGGTHVNYIADQICDKLLEVVKKRN---PKGALLKANQVRNHIFLFVNCLI 496

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P F+SQTKE+L + + +   +  + +       +   + + +   +  A+   D    
Sbjct: 497 TNPAFTSQTKEQLTTRKPQFGSKCTLTEE----FLKKIGKTEAVENILNFAAKKADLELA 552

Query: 395 A----RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SREN 447
                R        L  A+L G       +   +  L L EGDSA G A  GR     + 
Sbjct: 553 KSDGNRRSRMNNPKLVDANLAG------TKRGHECTLILTEGDSAKGLAVAGRAVLDPDR 606

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
             + PLRGK+LNV  A  D++  + EI  +   LG        D   LRY  ++IM D D
Sbjct: 607 IGVFPLRGKLLNVRDASHDQIAKNAEIQNIKQFLGLKHKTVYKDTLGLRYGHLMIMADQD 666

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
            DG+HI+ LL+ F   Q PSL+     +     P+  + +G +     +  S       +
Sbjct: 667 HDGSHIKGLLINFLQVQYPSLLKLPEFFREFITPIVKVWKGPNPNKPTNLRSFFTIPEYE 726

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
              E        K    K    +  +DA      +       +    E+  +  +   + 
Sbjct: 727 EWKEAHANDKGWKHKYYKGLGTSKAEDAQIYFSNLDVHLREFEVIKPEEEEMLDLAFSKK 786

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
             +   +                  ++   IN   IL            V++G
Sbjct: 787 KADSRKTWLGNFVPGTYLDHTDKMLTYDNFINKELILFSMADNLRSIPSVIDG 839


>gi|3021626|dbj|BAA25333.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 220/385 (57%), Positives = 294/385 (76%), Gaps = 4/385 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+          R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+L
Sbjct: 118 TNKTPVNSQVFHFSVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N   S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKII 501
           LITALG GIG++ ++I+KLRYH II
Sbjct: 358 LITALGCGIGREEYNIDKLRYHHII 382


>gi|212659907|gb|ACJ37010.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 271

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 146/273 (53%), Positives = 197/273 (72%), Gaps = 2/273 (0%)

Query: 42  HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           HHM++EV+DN++DE+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T
Sbjct: 1   HHMVFEVVDNSVDEALAGHADSILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL  
Sbjct: 61  VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQ 120

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
                   GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R  
Sbjct: 121 L-EVSAKRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRD 178

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIP
Sbjct: 179 DFHYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIP 238

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           QKDGGTHL+G R+ALTR + +Y+E++  +++ K
Sbjct: 239 QKDGGTHLAGFRAALTRTLGNYIEQNGIARQAK 271


>gi|255946696|ref|XP_002564115.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
           chrysogenum Wisconsin 54-1255]
 gi|211591132|emb|CAP97358.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
           chrysogenum Wisconsin 54-1255]
          Length = 1725

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 151/714 (21%), Positives = 272/714 (38%), Gaps = 55/714 (7%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           +D+   S   ++  Q L  L+ + KRP  YIG T+  +                      
Sbjct: 121 ADSASKSGDASEKYQKLTQLEHIIKRPDTYIGSTERTTQQMWVYNSGTELMEFRDVSFVP 180

Query: 40  GLHHMIYEVLDNAIDESLEGYAD----IITVTLNMD-GSCTVSDNGRGIPTDLHKEEGIS 94
           GL+ +  E++ NA D     + D     I +T++ + G  +V +NGRGIP ++H +E I 
Sbjct: 181 GLYKIFDEIVVNAAD---NKHNDSSMNEIRITIDREAGEISVWNNGRGIPIEIHSKEKIY 237

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFIN 152
             E+I   L     ++    KV+GG +G G  + N  S+   L  +  R+   Y+ ++  
Sbjct: 238 VPELIFGHLLTSSNYDDSQQKVTGGRNGFGAKLCNVFSTEFTLETQDSRQKKKYKQTWTE 297

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
            +          A  D  T+VTF P    F ++  + D      R +  L  +  +++  
Sbjct: 298 NMTKMGKAKITDAKGDDYTKVTFKPDFAKFGMEGIDDDFESLVKRRVYDLAGTAGVAVKL 357

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
             +  P      Y       +        P  +    I     +   ++    +DG  + 
Sbjct: 358 NNTRVPIRSFRKYMEMYTKAIRKERGDDGPPTKDE--IITCSPDPRWEIGFAVSDGSFQQ 415

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N+I    GGTH++ +   +  ++   V+K   S     ++     R      +  
Sbjct: 416 V-SFVNSIATTSGGTHVNYIADQICTRLADQVKKKNKSG---ATLKSAQIRNHIFIFVKA 471

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
            + +P F+SQTKE+L +   +   +  +++     + +  + + I+      A  +    
Sbjct: 472 LIVNPAFTSQTKEQLTTKASQFGSKCPLDEDFYKKVLKTEVMSNILHFAEQKADQILKKG 531

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQA 449
              R        L  A+  G       R+     L L EG+SA G A  GR+    +   
Sbjct: 532 DTGRRTRMNNPKLVDANKAG------TREGHHCTLILTEGESAKGLAMAGRAVVGPDLFG 585

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           + PLRGK+LNV  A FD++  + EI ++   +G    ++  D   LRY  ++IMTD D D
Sbjct: 586 VFPLRGKLLNVRDASFDQISKNVEIQSIKNFIGLQHKKEYTDTKGLRYGHLMIMTDQDHD 645

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           G+HI+ LL+ F   Q PSL+      I    P+  + +G      K+    + +      
Sbjct: 646 GSHIKGLLINFLQAQFPSLLKIPEFLIEFITPIIKVWKGD----PKNPTKQKSFFTMPEH 701

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
            E  E     +G   K                 +D   +  +    Q   +G+      +
Sbjct: 702 DEWREAHQHERGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDGEAGLIELAFSK 761

Query: 629 EIN---VSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           +          +           ++ ++   IN   IL            V++G
Sbjct: 762 KKADERKEWLRQFKPGTFLDHSVAKITYTDFINKELILFSMADNQRSIPSVVDG 815


>gi|3021638|dbj|BAA25339.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 221/385 (57%), Positives = 294/385 (76%), Gaps = 4/385 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+L
Sbjct: 118 TNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N   S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKII 501
           LITALG GIG++ ++I+KLRYH II
Sbjct: 358 LITALGCGIGREEYNIDKLRYHNII 382


>gi|73990502|ref|XP_534241.2| PREDICTED: similar to DNA topoisomerase II, beta isozyme [Canis
            familiaris]
          Length = 2041

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15   IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
             Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 473  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 532

Query: 54   DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
            D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 533  DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 592

Query: 112  KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
               KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 593  DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 652

Query: 170  GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 653  YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 703

Query: 227  GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
             G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 704  NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 762

Query: 287  THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
             H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 763  RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 819

Query: 347  LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
            + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 820  M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 875

Query: 407  IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                     D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 876  GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 933

Query: 462  RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
             A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 934  EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 993

Query: 519  TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
             F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 994  NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 1053

Query: 578  SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
              G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 1054 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 1105

Query: 638  LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                 NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 1106 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 1157

Query: 698  EENYLTI-----LSLICNGDKIKIT 717
             + +         +     DK ++ 
Sbjct: 1158 VDGFKPGQRKVLFTCFKRNDKREVK 1182


>gi|332800591|emb|CBY89785.1| GyrB protein [Flavobacterium glaciei]
          Length = 398

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 178/392 (45%), Positives = 253/392 (64%), Gaps = 7/392 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPL 159
           T++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G +YE  +  G    P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKALYPV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
              G      GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  + 
Sbjct: 61  KQIGETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDK 119

Query: 219 R----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                        G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+ 
Sbjct: 120 DGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEIPVEVALIYNTSYTENIF 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+
Sbjct: 180 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA++
Sbjct: 240 AEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAKK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPLR
Sbjct: 300 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           GKILNVE+A   K+  ++EI  + TALG  IG
Sbjct: 360 GKILNVEKAMHHKVFENEEIRNIFTALGVTIG 391


>gi|3021620|dbj|BAA25330.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 220/385 (57%), Positives = 294/385 (76%), Gaps = 4/385 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+L
Sbjct: 118 TNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKII 501
           LITALG GIG++ ++I+KLRYH II
Sbjct: 358 LITALGCGIGREEYNIDKLRYHHII 382


>gi|149584135|ref|XP_001519680.1| PREDICTED: similar to DNA topoisomerase II [Ornithorhynchus
           anatinus]
          Length = 1746

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 143/746 (19%), Positives = 277/746 (37%), Gaps = 79/746 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 62  YQKKTQLEHILLRPDTYIGSVELLTQQMWVFDEDAGLNCRDVTFVPGLYKIFDEILVNAA 121

Query: 54  DESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ +  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 122 DNKQRDNKMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 181

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI----KREGNIYEMSFINGILDNPLVVTGSAGN 167
              KV+GG +G G  + N  S+   +       R   +++ ++ + +     +       
Sbjct: 182 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYR--KLFKQTWTDNMGKAGEMKLKPFDG 239

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +  T +TF P    F +   + D    +  R  +++     V++ L  KR          
Sbjct: 240 EDYTCITFQPDLAKFKMTSLDKDIVALMSRRAYDIAGSTKDVKVFLNGKR---------L 290

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G   +V    + K     +P+++     N   ++ +  ++   + V  F N+I    
Sbjct: 291 PVKGFRGYVDLYVKDKVDETGNPLKVIHEEVNSRWEVCLTMSEKGFQQV-SFVNSIATSK 349

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTK
Sbjct: 350 GGRHVDYVADQIISKLIEVVKKKN---KGGVAVKPHQVKNHMWIFVNSLIENPTFDSQTK 406

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E + + + +S                     + I+  V   + ++      +    +   
Sbjct: 407 ENM-TLQAKSFGSKCQLSEKFIKAAASCGVVESILNWVKFKAQIQL---NKKCSAVKHNR 462

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILN 459
           +          D   ++     L L EGDSA      G    GR +    + PLRGK+LN
Sbjct: 463 IKGIPKLDDANDAGSKNSTDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKMLN 520

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTL 516
           V  A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ L
Sbjct: 521 VREASHKQIMENAEINNIIKIVGLQYKKNYDDQDSLKTLRYGKIMIMTDQDQDGSHIKGL 580

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELF 575
           L+ F     PSL+ + FL     P+  ++R K           E++  +     +    +
Sbjct: 581 LINFIHHNWPSLLRHRFLEEFITPIVKVSRNKQEMSFYSLPEFEEWKNSTGDHKKWKVKY 640

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
               G  +  + + +  D  +     K   P       + A IS  F+ +   +    L 
Sbjct: 641 YKGLGTSTSKEAKEYFSDMTRHRIQFKYSGPE------DDAAISLAFSKKQIDDRKEWLT 694

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
                  +F+ ++ ++  HG   +   L  +    +     +    I    S  +R   +
Sbjct: 695 -------HFMEDRRQRKLHGLPEDY--LYGKATNYLTYNDFINKELILFSNSDNERSIPS 745

Query: 696 RIEENYLTILSLI----CNGDKIKIT 717
            ++        ++       DK ++ 
Sbjct: 746 MVDGLKPGQRKVLFTCFRRNDKREVK 771


>gi|198042672|gb|ACH81161.1| GyrB [Alteromonas sp. UST981101-018]
          Length = 373

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 229/375 (61%), Positives = 287/375 (76%), Gaps = 4/375 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALSS LKLRI+R G  +E  + +G+   PL VTG   + TGT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSSRLKLRIRRGGKAHEQEYHHGVPQAPLAVTGDT-DKTGTMIR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PSSD F+   ++YD L  RLRELSFLNS V I L D+R  +       Y+GGI+AFV 
Sbjct: 60  FWPSSDTFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERDGKE--DHFMYEGGIQAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           YL+  K P+ Q          D I++++AM+WND + ENV CFTNNIPQ+DGGTHL+G R
Sbjct: 118 YLNEKKTPVHQKVFHFASEQEDGIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVR
Sbjct: 178 GALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVR 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VES +N+ L+ +L E+P E+KII  K++DA+  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 238 PAVESAMNEKLADFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE
Sbjct: 298 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 357

Query: 474 IGTLITALGTGIGQD 488
           + TLITALG GIG+D
Sbjct: 358 VATLITALGCGIGRD 372


>gi|317420224|emb|CBW30269.1| gyrase subunit B [Psychrobacter aquimaris]
          Length = 385

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 226/388 (58%), Positives = 289/388 (74%), Gaps = 3/388 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L++ I REG  Y  ++ +G+ D  +       + TGT++
Sbjct: 1   YKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADIQQ-MEPTDKTGTQI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PSSD+F+   F YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FV
Sbjct: 60  RFYPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           SY++  K  + +    +    D IS+++A++W D Y+E VLCFTNNIPQ+DGGTHLSG R
Sbjct: 118 SYINAGKDGINEVFHFVSEQDDGISVEVALQWTDTYNEKVLCFTNNIPQRDGGTHLSGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALTR + SY+++    KK+K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 SALTRGLNSYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES ++D  + +L E+P   K I  K++DA+  RDAAR+AR++TRRK  LDIA LPGK
Sbjct: 238 SAVESAMHDKFNDYLLENPSAGKAIANKIIDAARARDAARKAREMTRRKTTLDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E
Sbjct: 298 LADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAE 357

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKII 501
           +G LITALG GIG D ++ +K+RYHKII
Sbjct: 358 VGNLITALGCGIGPDEYNPDKVRYHKII 385


>gi|83016380|dbj|BAE53406.1| DNA gyrase B [Laceyella sacchari]
          Length = 390

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 198/393 (50%), Positives = 278/393 (70%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YK SGGLHGVGVSVVNALS WL++ +KREG I+  S+  G+ ++ L        +TG
Sbjct: 1   GGGYKFSGGLHGVGVSVVNALSEWLQVEVKREGKIHRQSYRRGVPEHDLQ-IVGETEETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T VTF P   IF+    ++++TLQ RLREL+FLN  ++I L DKR  E + +   Y+GGI
Sbjct: 60  TTVTFKPDPTIFTETTVYDFETLQSRLRELAFLNRGIKIVLEDKR-GEGKHVVFQYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+R+++ L + PI I G +++I +++AM++ND +  N+  + NNI   +GGTH 
Sbjct: 119 QSYVEHLNRNREVLHEPPIYISGEKESIQVEIAMQYNDSFSSNIYSYANNIHTHEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +SALTR I  Y  ++   K +  ++ GDD REG T+++S+K+ DP+F  QTK KL +
Sbjct: 179 AGFKSALTRVINDYARRNNLLKDNDSNLTGDDVREGLTAIISVKIADPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE RS  E    +    +LEE+P  AK ++ K + A+  R+AAR+AR+LTRRK  L+++S
Sbjct: 239 SEARSATEQLFTEHFQTYLEENPAVAKKVIGKAVMAARAREAARKARELTRRKNALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ R+  +SELF+VEGDSAGG+AKQGR R  QAILPLRGK+LNVE+AR DK L
Sbjct: 299 LPGKLADCTSRNAAESELFIVEGDSAGGTAKQGRDRMFQAILPLRGKVLNVEKARLDKAL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S++EI T+ITALGTGIG D F+I K RYH I+I
Sbjct: 359 SNEEIRTIITALGTGIG-DDFNIEKARYHNIVI 390


>gi|323710224|gb|ADY03046.1| DNA gyrase B [Escherichia coli]
          Length = 260

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 142/263 (53%), Positives = 186/263 (70%), Gaps = 4/263 (1%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DNAIDE+L G+   I VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGK
Sbjct: 1   VDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK 60

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     
Sbjct: 61  FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-K 119

Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+G
Sbjct: 120 TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEG 177

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 178 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 237

Query: 288 HLSGLRSALTRQITSYVEKSFGS 310
           HL+G R+A+TR + +Y++K   S
Sbjct: 238 HLAGFRAAMTRTLNAYMDKEGYS 260


>gi|19909547|dbj|BAB86969.1| DNA gyrase subunit B [Mycoplana bullata]
          Length = 398

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 251/398 (63%), Positives = 309/398 (77%), Gaps = 10/398 (2%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--- 169
           SYKVSGGLHGVGVSVVNALS WL+L+I R+G  ++M F  G     LV+TG A   T   
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLELKIYRDGKAHQMRFERGDTVKSLVITGDAPIRTEGE 60

Query: 170 -------GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                  GTEVTF PS   FS  DF+  TL+HRLREL+FLNS V I L D R  EP EI 
Sbjct: 61  KAGQPLSGTEVTFYPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLADHRGAEPVEIL 120

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           + Y+GG+EAFV +LD+ K P+++  I I+G +D I +DLA+ WND YHE +LCFTNNIPQ
Sbjct: 121 LHYEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGIELDLALWWNDSYHETMLCFTNNIPQ 180

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL   R++LTR + +Y+E S  +KK+K +  G+D REG T VLS+K+PDP+FSSQ
Sbjct: 181 RDGGTHLLAFRTSLTRVMGAYIESSGLAKKEKFAPTGEDAREGLTCVLSVKVPDPKFSSQ 240

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEVR  VE+  ++GLS W EEHP+EAK+IV K+++A+  R+AAR+ARDLTRRK
Sbjct: 241 TKDKLVSSEVRPAVENLCSEGLSQWFEEHPVEAKLIVSKIIEAASAREAARKARDLTRRK 300

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             L+I+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVER
Sbjct: 301 SALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVER 360

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           ARFD+ML S+ IGTLI ALGTGIG+D F+ +K+RYHKI
Sbjct: 361 ARFDRMLLSELIGTLILALGTGIGRDDFNADKVRYHKI 398


>gi|212531355|ref|XP_002145834.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
 gi|210071198|gb|EEA25287.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
          Length = 1696

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 151/701 (21%), Positives = 262/701 (37%), Gaps = 51/701 (7%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLD 50
           D  Q L   + + KRP  YIG  +  +                      GL+ +  E++ 
Sbjct: 130 DKYQKLTQYEHIIKRPDTYIGSIEKTTQQMWVYDSATESMAFREVTFVPGLYKIFDEIVV 189

Query: 51  NAID-----ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           NA D     E +    D I +T++ + G  +V +NGRGIP ++H +E I   E+I   L 
Sbjct: 190 NAADNKQNDEKM----DEIRITIDRESGVISVWNNGRGIPIEIHSKEKIYVPELIFGHLL 245

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVT 162
               ++    KV+GG +G G  + N  S+   +     R+G  Y  ++ + +        
Sbjct: 246 TSSNYDDGQMKVTGGRNGFGAKLCNVFSTEFSIETCDSRQGKKYHQTWTDNMSKVGKAKI 305

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            S+ +D  T+VTF P    F +   + D      R +  L  + ++++    S  P    
Sbjct: 306 TSSKSDDYTKVTFKPDYQKFGMDGMDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPVR-N 364

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                 +       +R ++ +      +  S  +   ++    +DG  + V  F N+I  
Sbjct: 365 FKKYMEMYTKAIKKERGEEAVNDKSEIVTAS-PDPRWEVGFAVSDGSFQQV-SFVNSIAT 422

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG+H++ +   +        E      K   S+     R      ++  + +P F+SQ
Sbjct: 423 TSGGSHVNYIADQI---CNRLAEAVKKKNKQGASLKASQIRNHIFIFVNALIVNPAFTSQ 479

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE+L +   +   +  ++D     + +  +   I+      A  +       R      
Sbjct: 480 TKEQLTTKPSQFGSKCILDDDFYKKVLKTEVMTNILHFAEKKADQLLKKTDGGRRSRMNN 539

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LN
Sbjct: 540 PKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLN 593

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A  D++  + EI  + + +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ 
Sbjct: 594 VRDASVDQISKNAEIQNIKSFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLIN 653

Query: 520 FFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           F   Q PSL+      I    P+  + +G      K +         Q   E        
Sbjct: 654 FLQVQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKSKSFFTMPEYEQWKEENKNDLSWQ 713

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                        D  +    L +     H     E  +I   F+ +   E       + 
Sbjct: 714 HKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQDHEAQLIDLAFSKKKADER-KEWLRQY 772

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                      + ++   IN   IL            V++G
Sbjct: 773 KPGTFLDHSTKQITYTDFINKELILFSMADNQRSIPSVVDG 813


>gi|113912343|gb|ABI48368.1| DNA gyrase subunit B [Pseudomonas fragi]
          Length = 383

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 224/386 (58%), Positives = 294/386 (76%), Gaps = 3/386 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ 
Sbjct: 1   KVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTQIH 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV 
Sbjct: 60  FKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVD 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS
Sbjct: 118 YLNTNKNPVNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 ALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +    S +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 AVEQEMGKFFSDFLLEHPNEAKLIVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 298 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYHKI 500
           GTLITALG GIG++ ++I+KLRYH I
Sbjct: 358 GTLITALGCGIGREEYNIDKLRYHNI 383


>gi|4996776|dbj|BAA78433.1| subunit B protein of DNA gyrase [bacterium rJ4]
          Length = 276

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 155/279 (55%), Positives = 190/279 (68%), Gaps = 3/279 (1%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94
           TD  +GLHHM++EV+DNAIDE+L GY   +TVTL+ DGS  V+DNGRGIPT++  EEG S
Sbjct: 1   TDDGTGLHHMVFEVVDNAIDEALAGYCTEVTVTLHGDGSVAVTDNGRGIPTEIMPEEGRS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT LHAGGKF    YKVSGGLHGVGVSVVNALS  L L I R+G  +   +  G 
Sbjct: 61  AAEVIMTILHAGGKFGGSGYKVSGGLHGVGVSVVNALSDKLLLDIYRQGRHHHQEYRLGE 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL   G   +  GT V F PS  IFS  + +YD L  RLRELSFLNS V+I L ++ 
Sbjct: 121 PQAPLAEQGDT-DKRGTAVRFYPSGKIFSNLEMHYDILARRLRELSFLNSGVRIVLREEA 179

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           S   RE    YKGGI AFV YL++ K P+  S + +    DN+ ++ A++WND Y ENV 
Sbjct: 180 SG--REDVFEYKGGISAFVEYLNKSKSPIHDSVLYMVAELDNVVVEAALQWNDSYTENVF 237

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           CFTNNIPQ+DGGTHL+G R+ALTR +  Y+E     KK+
Sbjct: 238 CFTNNIPQRDGGTHLTGFRNALTRTLGEYLESQGIIKKE 276


>gi|149639393|ref|XP_001507216.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Ornithorhynchus anatinus]
          Length = 1923

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 142/742 (19%), Positives = 276/742 (37%), Gaps = 88/742 (11%)

Query: 3    DNIQNSSYDADS--------IQILKGLDAVKKRPSMYIGDTDGES--------------- 39
            + +++++ +  S         Q    L+ +  RP  YIG  +  +               
Sbjct: 338  EEMESTNKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCR 397

Query: 40   ------GLHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEE 91
                  GL+ +  E+L NA D          I ++++ +    ++ +NG+GIP   HK E
Sbjct: 398  EVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVE 457

Query: 92   GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMS 149
             +    +I  +L     ++    KV+GG +G G  + N  S+   +    +   +  + +
Sbjct: 458  KVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQT 517

Query: 150  FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSV 206
            ++N ++            +  T +TF P    F +   + D    +  R  +L+     V
Sbjct: 518  WVNNMMKTSEPKIKHFEGEDYTCITFQPDLAKFKMDKLDKDIVALMTRRAYDLAGSCKGV 577

Query: 207  QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
            ++    K+             G  ++V    + K       +++     N   D+ +  +
Sbjct: 578  KVMFNGKK---------LPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLS 628

Query: 267  DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            +   + +  F N+I    GG H+  +   +  ++   V+K   +     SV     +   
Sbjct: 629  EKGFQQI-SFVNSIATTKGGRHVDYVVDQIVGKLIEVVKKKNKAG---VSVKPFQVKNHI 684

Query: 327  TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
               ++  + +P F SQTKE + + + +S                +    + I+  V   +
Sbjct: 685  WVFVNCLIENPTFDSQTKENM-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKA 743

Query: 387  MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQ 441
                     +  + +   +          D   +   +  L L EGDSA      G    
Sbjct: 744  Q---TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVI 800

Query: 442  GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYH 498
            GR R    + PLRGKILNV  A   +++ + EI  +I  +G    +   D      LRY 
Sbjct: 801  GRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDAESLKTLRYG 858

Query: 499  KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEES 558
            KI+IMTD D DG+HI+ LL+ F     PSL+ +GFL     P+   ++ K          
Sbjct: 859  KIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPE 918

Query: 559  LEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
             +++  +    +     +    G  +  + + +  D  +   L +   P       + A 
Sbjct: 919  FDEWKKHMENHKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAA 972

Query: 618  ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
            I+  F+ +   +    L        NF+ ++ ++  HG       L ++   G   + + 
Sbjct: 973  ITLAFSKKKIDDRKEWLT-------NFMEDRRQRRLHG-------LPEQFLYGTATKHLT 1018

Query: 678  EGSSIFSFGSKYKRIFSNRIEE 699
                I     K   +FSN   E
Sbjct: 1019 YNDFIN----KELILFSNSDNE 1036


>gi|307939354|gb|ADN95868.1| DNA gyrase B [Hymenobacter soli]
          Length = 412

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 191/397 (48%), Positives = 273/397 (68%), Gaps = 6/397 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E+IMT LHAGG  ++ SYKVSGGLHGVGVS VNALS+ LK+ ++R+G+IYE  +  G   
Sbjct: 1   ELIMTVLHAGGXXDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRKGHIYEQEYKIGFPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-- 214
             +   G   ++ GTEV FLP + IFS  ++ YDT+  RLR+LS+LN  ++I+L D+R  
Sbjct: 61  YDVKEIGDT-DEHGTEVQFLPDASIFSETEYRYDTVASRLRDLSYLNKGIRITLTDRREK 119

Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHE 271
             + E R    +  GG+  FV YLD  ++P +   PI ++  +    +++A+++N  Y E
Sbjct: 120 VENGEFRGEEFYSTGGLRDFVQYLDGEQRPSLLAEPIYVESEKGGTPVEVALQYNTSYQE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NV  + NNI   +GGTH+ G RSA+TR + +Y +K+   +K K  + GDD REG T+V+S
Sbjct: 180 NVYSYVNNINTIEGGTHVGGFRSAVTRVLKNYGDKNKLFEKAKVEITGDDFREGLTAVIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL +SEV   V S V + L+ +L+E+P +A  I++KV+ A+  R A
Sbjct: 240 VKVAEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+A+D+ +RKGVL   SLPGKLADCSE DP+  EL+LVEGDSAGG+AKQGR+R  QAI+
Sbjct: 300 ARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAIM 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           PLRGKILNVE+A+  ++L ++EI  +ITALG    + 
Sbjct: 360 PLRGKILNVEKAQEHRILENEEIRNMITALGVSFNER 396


>gi|308153150|dbj|BAJ22164.1| DNA gyrase subunit B [Thermocrispum municipale]
          Length = 400

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 187/403 (46%), Positives = 260/403 (64%), Gaps = 14/403 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            KSY VSGGLHGVGVSVVNALS  L++ I R G I+   ++N     PL   G   + TG
Sbjct: 1   SKSYAVSGGLHGVGVSVVNALSKRLEVEIHRGGVIWTQKYVNSEP-GPLQKEG-TTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T ++F P  +IF    FN +T+  RL+E++FLN  + + L D+R PE  E          
Sbjct: 59  TILSFWPDENIFETTYFNTETVARRLQEMAFLNKGLTMVLRDERQPEEAEDAEGQQAALK 118

Query: 222 --TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T +Y GG+E FV +++  +  +    I  +   D + +++AM+WN GY  +V  F N 
Sbjct: 119 ERTYYYPGGLEDFVKHINASRDTVHDKVISFEAKGDGLQVEVAMQWNTGYTPSVYTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG  +++SIK+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAIVSIKLAEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE +S V++  N+ LS W E +P EAK+I+ K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNSEAKSFVQTTTNEWLSDWFERNPSEAKLIISKAVSSAQARLAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG LDI  LPGKL DC    P++ EL++VEGDSAGGSAK+GR    QAILP+RGKI+N
Sbjct: 299 RRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR DK+L + E+ +LITALGTGI ++ FDI KLRYHKI++
Sbjct: 359 VEKARIDKVLKNNEVQSLITALGTGIHEE-FDITKLRYHKIVL 400


>gi|307110827|gb|EFN59062.1| hypothetical protein CHLNCDRAFT_137783 [Chlorella variabilis]
          Length = 1566

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 141/692 (20%), Positives = 251/692 (36%), Gaps = 71/692 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT----------DGES----------GLHHMIYEVLDN 51
            ++ Q +  ++ V  RP  YIG T          DGE           GL+ +  E+L N
Sbjct: 31  EETYQKVTQVEHVLLRPDTYIGSTERQQQQLWVHDGERMVHKSIDFVPGLYKIFDEILVN 90

Query: 52  AIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D  +     D + V ++ D GS  V +NG GIP ++HK EGI   E+I   L     +
Sbjct: 91  AADNKVRDASMDTLRVDVDADKGSIKVMNNGAGIPVEVHKTEGIYVPELIFGNLLTSSNY 150

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN---IYEMSFINGILDNPLVVTGSAG 166
           N    KV+GG +G G  + N  S+   +    +G     Y+ +F   +      V     
Sbjct: 151 NDNEKKVTGGRNGYGAKLANIFSTKFVVETC-DGKRGRRYKQTFTQNMSKKGQPVITDCK 209

Query: 167 -NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            ++  T +TF P    F ++D   ++++   + +  +   +          +  ++    
Sbjct: 210 ADENWTCITFYPDLARFGMEDLEQESVELMRKRVYDMAGLL---------GKTVKVFYNG 260

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +                           R +   ++ +   +G    V  F N I    G
Sbjct: 261 QRLKVKSFQEYVDMYLGPKDEGPTRVYERISDRWEVCIAPTEGQFNQV-SFVNAICTSKG 319

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++ +   + + +   + K       K +V     +      ++  + +P F SQTK+
Sbjct: 320 GTHVNYISDQVVKYLCDMINKK----DKKANVKPFMAKNYLWVFVNCLIENPAFDSQTKD 375

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
            L         +  + D     +         +V  +L  +  +      +    ++  L
Sbjct: 376 TLTLRASSFGSKCDLPDAFLKKVANCG-----VVNSILSFASFKADKELKKGDGAKRQRL 430

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNV 460
                     D   R+     L L EGDSA      G +  GR R    + PLRGK+LNV
Sbjct: 431 TGIPKLEDANDAGGRNSAGCTLILTEGDSAKSLAVAGLSVVGRDR--FGVFPLRGKLLNV 488

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             A   ++  + EI  +   LG   G+   D   LRY  ++IMTD D DG+HI+ L++ +
Sbjct: 489 RDASAAQITGNAEIQNIKQILGLQHGKVYTDAKSLRYGHLMIMTDQDHDGSHIKGLIMNY 548

Query: 521 FFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           F    PSL+   GFL     P+   T+GK           E++    +       +    
Sbjct: 549 FHHFYPSLLKLPGFLVEFITPIIKATKGKETISFYTMPEYEEWSETHNTRGWTIKYFKGL 608

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           G  + ++            +   +   +  +   +             ++        L 
Sbjct: 609 GTSTADE----------AKQYFANIQSHRKEFVWDGDADGQALEMAFSKKKVEDRKQWLQ 658

Query: 640 N-----RLNFIAEKSEKSWHGSINNSDILVKR 666
                  L+  A+    S+   ++   IL  R
Sbjct: 659 AFSPGTFLDHTADTI--SYSQFVHKELILFSR 688


>gi|19909569|dbj|BAB86980.1| DNA gyrase subunit B [Brevundimonas bacteroides]
          Length = 400

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 252/400 (63%), Positives = 306/400 (76%), Gaps = 10/400 (2%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--- 169
           SYKVSGGLHGVGVSVVNALS WLKL I R G  +EM F  G     L VTG A   T   
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLKLVIFRNGKRHEMRFERGDTVESLRVTGDAPIRTDGA 60

Query: 170 -------GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                  GT+VTF PS   FS  DF+  TL+HRLREL+FLNS V I L D R  EP E  
Sbjct: 61  KAGQTLSGTQVTFYPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLADHRHAEPFEEI 120

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           + Y+GG+EAFV +LD+ K P+++  I I+G ++ + +DLA+ WND YHE +LCFTNNIPQ
Sbjct: 121 LHYEGGVEAFVRHLDKSKSPILKDVIVIRGKKEGVELDLALWWNDSYHETMLCFTNNIPQ 180

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHLS  R++LTR + +Y+E S   KK+K +  G+D REG T VLS+K+PDP+FSSQ
Sbjct: 181 RDGGTHLSAFRASLTRVMGAYMESSGALKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQ 240

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEVR  VE+  ++GLS W EEHP+EAK+I  K+++A+  R+AAR+ARDLTRRK
Sbjct: 241 TKDKLVSSEVRPAVEALCSEGLSTWFEEHPVEAKLITAKIIEAASAREAARKARDLTRRK 300

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
             +DI+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVER
Sbjct: 301 SAMDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVER 360

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ARFD+MLSS  IGTLI ALGTGIG+D F+ +KLRYHKII+
Sbjct: 361 ARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 400


>gi|302746272|gb|ADL62726.1| GyrB [Morganella psychrotolerans]
          Length = 389

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 230/391 (58%), Positives = 290/391 (74%), Gaps = 4/391 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNAL+  L+L I+REG ++E  + +G     L V G   + TG
Sbjct: 2   DNSYKVSGGLHGVGVSVVNALTEKLELVIRREGKVHEQIYRHGEPQGHLAVVGET-DKTG 60

Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS D F    +F Y+ L  RLRELSFLNS V I LIDKR  +       Y GGI
Sbjct: 61  TRVRFWPSMDTFKTETEFEYEILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYDGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL R K  +  +       +DNI++++AM+WND + ENV CFTNNIPQ+DGG HL
Sbjct: 119 KAFVEYLSRAKTSIHNNVFYFSTEKDNINVEVAMQWNDSFQENVYCFTNNIPQRDGGAHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G          S++EK   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFPCGNDPYSQSFIEKEGLNKKAKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VES +N+ LS +L+E+P + KIIV K++DA+  R+AARRAR++TRRKG LD+A 
Sbjct: 239 SEVKTAVESIMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALDLAG 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 LPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           +SQE+ TLITALG+GIG+D ++ +KLRYH+I
Sbjct: 359 ASQEVATLITALGSGIGRDEYNPDKLRYHRI 389


>gi|48596890|dbj|BAD22773.1| DNA gyrase subunit B [Photobacterium indicum]
          Length = 387

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 225/389 (57%), Positives = 299/389 (76%), Gaps = 3/389 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  ++L I R G+I+   + +G+ D PL   G   + TGT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVELTINRHGSIHHQIYHHGVPDKPLEAIGET-DKTGTRIR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS D F+   F+Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI+AFV 
Sbjct: 60  FWPSEDTFTNVVFHYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGIKAFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+R+K P+          R++ IS+++AM+WNDG+ E + CFTNNIPQ+DGG+HL+G R
Sbjct: 119 HLNRNKTPIHSKVFHFDFEREDGISVEVAMQWNDGFQEGIYCFTNNIPQRDGGSHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + ++++K   SKK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 GALTRTLNTFMDKEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VES +N+ LS +L E+P +AKI+  K++DAS  R+AAR+AR++TRRKG LD+A LPGK
Sbjct: 239 PAVESAMNEKLSEFLLENPSDAKIVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  S L++VEGD+AGGSAKQGR+R+NQA+LPL+GKILNVE+ARFDKMLSSQE
Sbjct: 299 LADCQEKDPALSVLYIVEGDAAGGSAKQGRNRKNQAMLPLKGKILNVEKARFDKMLSSQE 358

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIII 502
           + TLITA+G GIG+D ++ +KLR H I+I
Sbjct: 359 VATLITAMGCGIGRDEYNPDKLRDHNIVI 387


>gi|209863962|gb|ACI88899.1| GyrB [Acidiphilium acidophilum]
          Length = 398

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 230/398 (57%), Positives = 292/398 (73%), Gaps = 9/398 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVG +VVNALS W+++RI R+G  + + F NG    PL V G++ + T
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT VTF PS+  F+  +F++   + RLREL+FLNS + I+L D+R    +E    Y+GG+
Sbjct: 61  GTSVTFRPSAATFTRTEFDFAIYERRLRELAFLNSGLTINLRDERHSAVQEAHFRYEGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
             FVS+LDR K  L   P+          I ++ A+ WND YHE +LCFTNNI Q+DGGT
Sbjct: 121 VEFVSWLDRAKTQLFSPPVTAFKDDAPGGIKVEFALAWNDTYHETMLCFTNNIVQRDGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G RSALTR ++ Y E          S+  +D REG T+VLS+K+PDP+FSSQTK+KL
Sbjct: 181 HLAGFRSALTRVVSKYAESLGKKDS--LSLSCEDMREGLTAVLSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+ +V++ V D L  W E HP E ++I +KV+DA+  R+AAR+AR+LTRRKGVLDI
Sbjct: 239 VSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRKGVLDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADC ERDP KSE+F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+
Sbjct: 299 STLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 358

Query: 468 MLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKI 500
           ML S EIGTLITALGTGIG     Q  FDI+KLRYH+I
Sbjct: 359 MLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRI 396


>gi|302500519|ref|XP_003012253.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
 gi|291175810|gb|EFE31613.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
          Length = 1680

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 142/685 (20%), Positives = 250/685 (36%), Gaps = 41/685 (5%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
            ++  Q +  L+ + KRP  YIG  +                         GL+ +  E+
Sbjct: 126 SSEKYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEI 185

Query: 49  LDNAIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D          I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L   
Sbjct: 186 LVNAADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTS 245

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+   +     ++   +++++ N +          
Sbjct: 246 SNYNDMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITE 305

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              D  T+VTF P    F +   + D      R +  +  +   ++    +  P +    
Sbjct: 306 CKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKK 365

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y       +                I     +   ++    +DG  + V  F N+I    
Sbjct: 366 YMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTS 424

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++ +   +        +      K   ++     +      ++ ++ +P F+SQTK
Sbjct: 425 GGTHVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTK 481

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L +   +   +  V+D     + +  +   I+      A  +       R        
Sbjct: 482 EQLTTRPSQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPK 541

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVE 461
           L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV 
Sbjct: 542 LTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVR 595

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            A  D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ + 
Sbjct: 596 DASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYL 655

Query: 522 FRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
               P+L+   GFL     P+  + +G        +         +            K 
Sbjct: 656 QVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKK 715

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  D  +    L +     H     E  +I   F+ +   E       +   
Sbjct: 716 YYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKP 774

Query: 641 RLNFIAEKSEKSWHGSINNSDILVK 665
                    + ++   IN   IL  
Sbjct: 775 GTYLDHSTDQITYTDFINKELILFS 799


>gi|62288325|gb|AAX78438.1| DNA gyrase subunit beta [Aeromonas hydrophila subsp.
           decolorationis]
          Length = 376

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 227/379 (59%), Positives = 289/379 (76%), Gaps = 3/379 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKL 495
           LITALG GIG+D ++ +KL
Sbjct: 358 LITALGCGIGRDEYNPDKL 376


>gi|317420196|emb|CBW30255.1| gyrase B subunit [Pseudoalteromonas espejiana]
          Length = 386

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 228/385 (59%), Positives = 297/385 (77%), Gaps = 6/385 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I+REG ++E ++  G+ + PL + G A + TGTE+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPNAPLAIIGDA-DTTGTELRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS + F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV Y
Sbjct: 60  WPSGETFTNLDFHYDILAKRLRELSFLNSGVSIILTDER-EENKSDHFKYEGGIQAFVEY 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L+R+K P+ +        R+   IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 LNRNKTPVHKGVFHFTHEREEDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           SALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 SALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  + +  S +L E+P++AKI+V K++DA+  R+AAR+AR++TRRKG +D+A LP
Sbjct: 239 VKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP   EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQEKDPSLXELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLR 496
           QE+ TLITALG GIG+D +D  KLR
Sbjct: 359 QEVATLITALGCGIGRDEYDPEKLR 383


>gi|313747305|dbj|BAJ41201.1| DNA gyrase subunit B [Bacillus sp. 3B133-2]
          Length = 390

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 181/393 (46%), Positives = 267/393 (67%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS   ++ +KR+G+I+ + F  G    PL + G + ++TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSVSTEVYVKRDGHIHSIKFERGKTVQPLQIIGES-DETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F    +IF     + Y+ L  R+REL++LN  ++I++ D+R  E R  +  ++GGI
Sbjct: 60  TTTRFKADPEIFKETTVYEYEILATRIRELAYLNRGIRITIQDEREEEVRSDSFHFEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             +V +L++ K+P+      ++G +D IS+++AM++N G+   +  F NNI   +GGTH 
Sbjct: 120 REYVEHLNKSKEPIHDPID-VRGEKDGISVEIAMQYNAGFSSTIYSFANNINTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  K+   K    ++ G+D REG T+++S+K PDP+F  QTK KL +
Sbjct: 179 SGFKTALTRVINDYARKNGMLKDSDANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV S+  S  ++G   ++ E+P  A+ I++K L A+  R AA++AR+ TRRK  L+++S
Sbjct: 239 SEVSSITNSLFSEGFERFMLENPSVARKIIEKGLMAARARVAAKKAREFTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+  +P +SE+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+A  +++L
Sbjct: 299 LPGKLADCTSTNPAESEIYIVEGDSAGGSAKSGRDRYFQAILPLRGKILNVEKANLNRIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITA GTGIG++ FD+ K RYHKI+I
Sbjct: 359 SNAEIRAMITAFGTGIGEE-FDLEKARYHKIVI 390


>gi|89160899|gb|ABD62993.1| DNA gyrase subunit B [Lactobacillus brevis]
          Length = 319

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 151/320 (47%), Positives = 216/320 (67%), Gaps = 4/320 (1%)

Query: 19  KGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSD 78
           +GL+AV+KRP MYIG T  + GLHH+++E++DN IDE+L G+AD I VT+N D S TV+D
Sbjct: 1   EGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIVDNGIDEALAGFADEIHVTVNQDNSITVTD 59

Query: 79  NGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLR 138
           NGRGIP D+ K+ G  A E + T LHAGGKF    YKVSGGLHGVG SVVNALS+ L+++
Sbjct: 60  NGRGIPVDIQKKTGKPALETVYTILHAGGKFGGGGYKVSGGLHGVGASVVNALSTDLEVQ 119

Query: 139 IKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHR 195
           + R G  Y ++F +G +  P+ V   G   +  GT V FLP  DIF     F+  TL  R
Sbjct: 120 VIRGGKKYAIAFDHGHVKTPMHVIEEGLPQDQHGTIVHFLPDPDIFRETTVFDIKTLTTR 179

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           +REL+FLN  ++I++ D+R  +P E    Y+GGI  +V YL+ +K+ L + PI ++G  +
Sbjct: 180 IRELAFLNKGLRITIRDERPEKPTEEDFLYEGGIRHYVDYLNENKETLFEPPIYVEGQEN 239

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
            I++++A+++ D YH N+L FTNNI   +GGTH  G + ALTR +  Y  ++   K ++ 
Sbjct: 240 GITVEVALQYTDDYHNNLLTFTNNIHTYEGGTHEEGFKRALTRVVNDYARQNKLMKDNEA 299

Query: 316 SVIGDDCREGFTSVLSIKMP 335
           ++ GDD REG T+V+S+K P
Sbjct: 300 NLTGDDVREGLTAVVSVKHP 319


>gi|326473740|gb|EGD97749.1| DNA topoisomerase II [Trichophyton tonsurans CBS 112818]
          Length = 1678

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 143/685 (20%), Positives = 250/685 (36%), Gaps = 41/685 (5%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
            ++  Q +  L+ + KRP  YIG  +                         GL+ +  E+
Sbjct: 126 SSEKYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEI 185

Query: 49  LDNAIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D          I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L   
Sbjct: 186 LVNAADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTS 245

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+   +     ++   +++++ N +          
Sbjct: 246 SNYNDMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITE 305

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              D  T+VTF P    F +   + D      R +  +  +   S+    +  P +    
Sbjct: 306 CKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTSVKLNGTRIPIKSFKK 365

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y       +                I     +   ++    +DG  + V  F N+I    
Sbjct: 366 YMEMYTKAIKAERGEDSTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTS 424

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++ +   +        +      K   ++     +      ++ ++ +P F+SQTK
Sbjct: 425 GGTHVNYISDQI---CNKLADALKKKNKAGATLKAAQIKNHIFLFVNSQIVNPAFTSQTK 481

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L +   +   +  V+D     + +  +   I+      A  +       R        
Sbjct: 482 EQLTTRASQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPK 541

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVE 461
           L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV 
Sbjct: 542 LTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVR 595

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            A  D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ + 
Sbjct: 596 DASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYL 655

Query: 522 FRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
               P+L+   GFL     P+  + +G        +         +            K 
Sbjct: 656 QVAFPTLLKIPGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKK 715

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  D  +    L +     H     E  +I   F+ +   E       +   
Sbjct: 716 YYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKP 774

Query: 641 RLNFIAEKSEKSWHGSINNSDILVK 665
                    + ++   IN   IL  
Sbjct: 775 GTYLDHSTDQITYTDFINKELILFS 799


>gi|2196832|gb|AAB80833.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 214/409 (52%), Positives = 289/409 (70%), Gaps = 4/409 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L   GKF   S  V  G   VGVSVVNALS  L+L I+R+G +YE  + +G   
Sbjct: 1   EVIMTVLRPLGKFEDPSKDVYVGWPRVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F P+ + F+  +F+Y+ L  R+RELSFLNS V I LID+R  
Sbjct: 61  EPIKEIGEAT-KTGTEIRFWPTHETFTETEFHYELLAKRIRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI+AFV YL+R+K P+ +        RD+ I++++AM+WNDG+ E++ C
Sbjct: 120 KD--EFFHYEGGIKAFVEYLNRNKTPVNKDVFHFSQERDDGITVEVAMQWNDGFQESIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + +Y+E    +KK K +   DD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATRDDAREGLTAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVS+EV+  VE  + + L+ +L E+P  +K IV K+++A+  R+ AR+A
Sbjct: 238 DPKFSSQTKDKLVSTEVKGPVEQTMGEKLNDYLLENPAHSKRIVGKIIEAARAREGARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TR KGVLD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRCKGVLDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           KI  VE+ARFDKMLSSQE+ T I ALG GIG            +++IMT
Sbjct: 358 KIFKVEKARFDKMLSSQEVATXINALGCGIGCGVLTALHTGGEEVVIMT 406


>gi|326482946|gb|EGE06956.1| DNA topoisomerase II [Trichophyton equinum CBS 127.97]
          Length = 1678

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 143/685 (20%), Positives = 250/685 (36%), Gaps = 41/685 (5%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
            ++  Q +  L+ + KRP  YIG  +                         GL+ +  E+
Sbjct: 126 SSEKYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEI 185

Query: 49  LDNAIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D          I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L   
Sbjct: 186 LVNAADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTS 245

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+   +     ++   +++++ N +          
Sbjct: 246 SNYNDMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITE 305

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              D  T+VTF P    F +   + D      R +  +  +   S+    +  P +    
Sbjct: 306 CKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTSVKLNGTRIPIKSFKK 365

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y       +                I     +   ++    +DG  + V  F N+I    
Sbjct: 366 YMEMYTKAIKAERGEDSTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTS 424

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++ +   +        +      K   ++     +      ++ ++ +P F+SQTK
Sbjct: 425 GGTHVNYISDQI---CNKLADALKKKNKAGATLKAAQIKNHIFLFVNSQIVNPAFTSQTK 481

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L +   +   +  V+D     + +  +   I+      A  +       R        
Sbjct: 482 EQLTTRASQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPK 541

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVE 461
           L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV 
Sbjct: 542 LTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVR 595

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            A  D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ + 
Sbjct: 596 DASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYL 655

Query: 522 FRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
               P+L+   GFL     P+  + +G        +         +            K 
Sbjct: 656 QVAFPTLLKIPGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKK 715

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  D  +    L +     H     E  +I   F+ +   E       +   
Sbjct: 716 YYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKP 774

Query: 641 RLNFIAEKSEKSWHGSINNSDILVK 665
                    + ++   IN   IL  
Sbjct: 775 GTYLDHSTDQITYTDFINKELILFS 799


>gi|38350512|gb|AAR18369.1| DNA gyrase subunit B protein [Fusobacterium necrophorum subsp.
           necrophorum]
          Length = 402

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 181/402 (45%), Positives = 266/402 (66%), Gaps = 3/402 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGND 168
             +YKVSGGLHGVG+SVVNALS W ++++KREGN+Y   ++ G     + +      G  
Sbjct: 2   NDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGET 61

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  +IF    F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +  ++GG
Sbjct: 62  TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGG 121

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  F+  + R  + L+   I I+G  + + +D+A  +  G  E +  F NNI   +GG+H
Sbjct: 122 ISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEVIYSFVNNINTTEGGSH 181

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++G R+ L R +  + +KS   +  +  +          +++S+K+P P+F  QTK KL 
Sbjct: 182 VTGFRTCLQRLLMIW-KKSGIFEGKRWKITRRRHSGRNWAIISVKVPQPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEV  +V + ++  L  +LE++P + K+I++K+L +   R+AA+RAR+   RK VL++ 
Sbjct: 241 NSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSVLEVG 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADCS + P++ E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K 
Sbjct: 301 SLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKA 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           L S EI  ++TA GT IG++SFD+ KLRY KII+MTDADVDG
Sbjct: 361 LESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 402


>gi|281486947|gb|ADA71021.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 374

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 223/377 (59%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTC-TGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLVDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|83017302|dbj|BAE53568.1| DNA gyrase B [Microbulbifer hydrolyticus]
          Length = 389

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 225/392 (57%), Positives = 293/392 (74%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS+ LKL I+R G I+E  + +G+   PL V     + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSAELKLTIRRGGKIHEQVYRHGVPVAPLSVV-GDTDTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ F+  +F+++ L  RLRELSFLNS V+I L D+RS +       Y+GG+ 
Sbjct: 60  TTVHFKPSAETFTNIEFHFEQLAKRLRELSFLNSGVRIVLRDERSGKE--EVYEYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+ +K P+ +         D IS+++A++WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNLNKNPINKVLHFQNQREDGISVEVALQWNDSFQENIYCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + +Y+EK    KKDK S  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNNYIEKEGVGKKDKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK IV K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGLSFNDYLLENPQEAKAIVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC ++DP  SE++L EGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQQKDPALSEIYLAEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S E+GTLITALG GIG+  F+ +KLRYH III
Sbjct: 358 SAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|133778460|dbj|BAF49236.1| DNA gyrase B subunit [Leptospira meyeri serovar Semaranga]
          Length = 387

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 195/389 (50%), Positives = 270/389 (69%), Gaps = 3/389 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS++L++ + ++G ++   +  G+    + V G   +  GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSTYLEVEVHQDGKLHYQKYQAGVPMEDVKVIGDTTH-RGTVV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F     IF+  DF++DTL  R RE++FLN  + I + D+R  E  +    + GGI +FV
Sbjct: 60  RFKADDTIFTTVDFSFDTLSARFREIAFLNKGLLIRIEDQRKDEVAKHEFKFDGGIVSFV 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y+   K PL    +   G ++N+  ++A+++ D Y EN+ CFTN I    GGTHL G R
Sbjct: 120 EYITESKHPLH-KVLHFVGEKENVWAEIALQYCDTYSENIFCFTNAINNNLGGTHLEGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +ALTR +  +++K     K + +   GDD +EG  +V+SIK+P P+F+SQTKEKLV++EV
Sbjct: 179 TALTRTLNDHLKKDQILFKKQPNGLQGDDIKEGLCAVISIKIPQPQFNSQTKEKLVNAEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + ++++   +GL+ + EE+P   K I++K + AS  R+AARRARDLTRRK VL+   LPG
Sbjct: 239 KGLMQTITGEGLNRFFEENPAVIKKILEKCILASKAREAARRARDLTRRKTVLEGGGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCSE+DP+  EL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS++
Sbjct: 299 KLADCSEKDPEHCELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSNE 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKII 501
           EI TLIT +GTGIG D F++ KLRY KII
Sbjct: 359 EIRTLITVMGTGIGDDEFNVEKLRYKKII 387


>gi|332001632|gb|AED99067.1| DNA gyrase subunit B [Ferrimonas sp. JYr13]
          Length = 384

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 218/384 (56%), Positives = 294/384 (76%), Gaps = 4/384 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G +++  +  G  ++P+   G   + TGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSDKLELTIRRQGKVHQQIYRLGEPESPVAAVGDT-DKTGTAI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS   FS  +F+Y+ L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV
Sbjct: 60  RFWPSPGTFSNIEFHYEILAKRLRELSFLNSGVSIKLLDERDGKN--DHFCYEGGIQAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            YL+++K P+          R++ I+++++M+WNDG+ E++ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 EYLNQNKTPIHPMAFSFNLEREDGIAVEVSMQWNDGFQESIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR + SY+EK   +KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RAALTRTLNSYMEKEGFNKKNKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  + + LS +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG +D+A LPG
Sbjct: 238 KTAVEQAMGEKLSDYLLENPNDAKSVVNKIIDAARAREAARKAREMTRRKGAMDLAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SE+++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLR 496
           E+ TLITALG GIG+D +D  K R
Sbjct: 358 EVATLITALGCGIGRDDYDPEKTR 381


>gi|294657090|ref|XP_459406.2| DEHA2E01738p [Debaryomyces hansenii CBS767]
 gi|199432439|emb|CAG87617.2| DEHA2E01738p [Debaryomyces hansenii]
          Length = 1411

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 156/712 (21%), Positives = 261/712 (36%), Gaps = 45/712 (6%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHM 44
            SS  +D  Q L  L+ + KRP  YIG  +                         GL+ +
Sbjct: 37  KSSNASDQYQKLSQLEHILKRPDTYIGSVERSPIEMWCFDPIAESMVYKEVNIVPGLYKI 96

Query: 45  IYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
             E+L NA D  ++      I V ++ + +   V ++G+GIP ++H +E I   E+I   
Sbjct: 97  FDEILVNAADNKIKDPSMKNIKVKIDPENNLIEVMNDGKGIPVEIHDKEKIYIPELIFGN 156

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL-DNPL 159
           L     ++    KV+GG +G G  + N  S+   L       G +Y+ ++ N +   +  
Sbjct: 157 LLTSSNYDDDEKKVTGGRNGFGAKLCNIFSTEFILETADLNTGFLYKQTWTNNMSNISKP 216

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSP 216
            +T        T+VTF P    F +   + +TL     R+ +L    ++  I L DK+  
Sbjct: 217 KITKLKSKREYTKVTFKPDLSKFGMTSLDEETLSVLTRRVYDLCGTVNNCNIYLNDKKLN 276

Query: 217 EPREITM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
                             +         +Q+   I     N   ++A   +DG    V  
Sbjct: 277 IRNFKAYVEMYVKAIKERNPDPEPMDGTIQNYTTIVHEVFNDRWEVAFAVSDGSFNQV-S 335

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F N+I    GGTH+  +   +  ++ + + K    KK        + +      ++  + 
Sbjct: 336 FVNSIATTAGGTHVKHVSDQIITKLIATLAKKEKGKKKLMIKT-QEVKNNMFLFVNCLIE 394

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P F+SQTKE+L +   +   +      +S       L    IV K+   +   +     
Sbjct: 395 NPAFTSQTKEQLTTKVSQFGGKPSEKIAISEQFINKIL-KTSIVDKIRSIANANEDKALQ 453

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAI 450
           +    RK  +              ++  K  L L EGDSA      G A  GR+      
Sbjct: 454 KVDGSRKSRIKGQVKLVDANRAGTKEGHKCTLILTEGDSALSLAVAGLAVVGRN--YYGC 511

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADV 508
            PLRGK+LNV  A  D++  + EI  L   +G    +     +IN LRY  I+IMTD D 
Sbjct: 512 FPLRGKLLNVREASTDQVSKNVEINALKQIIGLQHKKHYSLENINTLRYGHIMIMTDQDQ 571

Query: 509 DGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           DG+HI+ L++ F     P L+   GFL     P+  +T  +     +           + 
Sbjct: 572 DGSHIKGLIINFLETSFPGLLQVPGFLLEFITPIVKVTVNRRGSGKQVIPFYTMPEFEKW 631

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
              E      ++            +       L K     H     +Q +I   F+ +  
Sbjct: 632 RDTEGLTCRWTQKYYKGLGTSTDAEGREYFSALDKHLKTFHALQGDDQQLIDLAFSKKKA 691

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
            +             +   +  E      IN   IL            VL+G
Sbjct: 692 DDR-KEWLQGFEPGTHLDPDLEEIPISDFINKELILFSMADNVRSIPSVLDG 742


>gi|134077492|emb|CAK96636.1| unnamed protein product [Aspergillus niger]
          Length = 1712

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 148/701 (21%), Positives = 255/701 (36%), Gaps = 61/701 (8%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GL 41
           N  +  Y   SI  L  L+ + KRP  YIG  +  +                      GL
Sbjct: 130 NNASEKYQKASISGLTQLEHIIKRPDTYIGSVERTTQQMWVYSSESDGMEYREVSYVPGL 189

Query: 42  HHMIYEVLDNAID-----ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
           + +  E++ NA D     E++      I VT++ + G  +V +NGRGIP ++H +E I  
Sbjct: 190 YKIFDEIVVNAADNKQNDENM----SEIRVTVDRESGVISVWNNGRGIPIEMHAKEKIYV 245

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+   +  +   +   Y  ++   
Sbjct: 246 PELIFGHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQDSSQKKKYRQTWTEN 305

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +          A  +  T+VTF P    F +   + D      R +  L  + ++++   
Sbjct: 306 MTKIGKAKITEAKGEDYTKVTFKPDYAKFGMDGMDDDFEALVKRRVYDLAGTAKVNVKLN 365

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
            +  P      Y       +        P  +    I     +   ++    +DG  + V
Sbjct: 366 GTRIPIRGFKKYMEMYTKAIRKERGDTGPAPKDE--IITCSPDPRWEVGFAVSDGAFQQV 423

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GGTH++ +   +        E+     K+  ++     R      ++  
Sbjct: 424 -SFVNSIATTSGGTHVNYIADQI---CNRLAEQVKKKNKNGATLKTAQIRNHIFIFVNAL 479

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P F+SQTKE+L +   +   +  +++     + +  +   I+      A  +     
Sbjct: 480 IVNPAFTSQTKEQLTTKASQFGSKCVLDEDFYKKILKTAVMENILHFAQQKADQMLKKTD 539

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAI 450
             R        L  A+  G       +D     L L EGDSA G A  GR+    +   +
Sbjct: 540 GGRRSRMNNPKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGV 593

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            PLRGK+LNV  A FD++  +QEI  +   LG    ++  D   LRY  ++IMTD D DG
Sbjct: 594 FPLRGKLLNVRDASFDQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDG 653

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGI-----TRGKSLQYVKDEESLEDYLI 564
           +HI+ LL+ F   Q PSL+      I    P+  +           +        E +  
Sbjct: 654 SHIKGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAE 713

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
                                      D  +    L +     H     E  +I   F+ 
Sbjct: 714 EHQ-----HERGWDHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDNEAELIELAFSK 768

Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
           +   E       +            + ++   IN   IL  
Sbjct: 769 KKADER-KEWLRQFKPGTFLDHSVEKITYTDFINKELILFS 808


>gi|86651921|gb|ABD14448.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 379

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 222/381 (58%), Positives = 295/381 (77%), Gaps = 3/381 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  ++L IKR G+I++  + +G+ D PL V G   ++TGT + F PS + F+ 
Sbjct: 1   VSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGTRIRFWPSEETFTN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F Y+ L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV +L+R+K P+ 
Sbjct: 60  IEFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFMYEGGIQAFVEHLNRNKTPIH 118

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                    RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R ALTR + S+
Sbjct: 119 PKVFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRGALTRTLNSF 178

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ 
Sbjct: 179 MDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEK 238

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP 
Sbjct: 239 LAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 298

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G 
Sbjct: 299 VSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGC 358

Query: 484 GIGQDSFDINKLRYHKIIIMT 504
           GIG+D ++ +KLRYH IIIMT
Sbjct: 359 GIGRDEYNPDKLRYHNIIIMT 379


>gi|288925439|ref|ZP_06419373.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella
           buccae D17]
 gi|288337910|gb|EFC76262.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella
           buccae D17]
          Length = 627

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 151/545 (27%), Positives = 254/545 (46%), Gaps = 56/545 (10%)

Query: 21  LDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           ++ V+ RP MYIG     S    G++ ++ EV+DN+IDE      D I V ++ +   +V
Sbjct: 1   MEHVRTRPGMYIGRLGDGSLPEDGIYVLLKEVIDNSIDEFKMNAGDRIEVDIDDNLRVSV 60

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            D GRGIP            E + + L+ GGK++ K++K S GL+GVG+  VNALS+  +
Sbjct: 61  RDYGRGIPQGK-------LVEAV-SMLNTGGKYDSKAFKKSVGLNGVGLKAVNALSARFE 112

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
            +  R+G + E+ F  G+L +    T    +++GT + F P + +F    F+ D ++  L
Sbjct: 113 AKSYRDGTVRELVFERGVLKDD--ETHETSDESGTFIFFEPDALLFKNYKFHDDIVETML 170

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           R  ++LN+ + I    +R             G++  ++         +   + ++G    
Sbjct: 171 RNYTYLNTGLTIMYNGRRILSRH--------GLKDLLTDNMTV--DGLYDIVHVKGED-- 218

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             I++A    + Y E    F N      GGTH S  +  + + I  +  K          
Sbjct: 219 --IEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAKTIKEFYGKYEY------- 269

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-------VVESFVNDGLSAWLE 369
               D R G  + +++ + +P F SQTK KL S+++          V  F+   +  +L 
Sbjct: 270 ---GDIRNGLVAAIALNVEEPVFESQTKIKLGSTQMAPDGDSINKYVGDFIKKEIDNYLH 326

Query: 370 EHPLEAKIIVKKVLDASMVRDAA------RRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            H   A++I  K+ ++   R A        R R          +       +D      +
Sbjct: 327 IHQDVAEVIENKIKESERERKAMAGVTKLARERAKKANLHNRKLRDCRIHFSDVKNERKE 386

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           ++ +F+ EGDSA GS  + R    QA+  LRGK LN        +  ++E   L  AL  
Sbjct: 387 EASIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALDI 446

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
             G     ++ LRY+K+I+ TDADVDG HIR L++TFF +  P LI  G +Y+++ PL+ 
Sbjct: 447 EDG-----LDTLRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIKKGHVYVLQTPLFR 501

Query: 544 ITRGK 548
           +   +
Sbjct: 502 VRNKR 506


>gi|198042722|gb|ACH81186.1| GyrB [Vibrio sp. UST981101-011]
          Length = 379

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 221/381 (58%), Positives = 295/381 (77%), Gaps = 3/381 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGV VSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++
Sbjct: 1   YKVSGGLHGVSVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV
Sbjct: 60  RFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 119 EHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 179 RAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPG
Sbjct: 239 KSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 299 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 358

Query: 473 EIGTLITALGTGIGQDSFDIN 493
           E+ TLITALG GIG+D ++ +
Sbjct: 359 EVATLITALGCGIGRDEYNPD 379


>gi|242772741|ref|XP_002478098.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
 gi|218721717|gb|EED21135.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
          Length = 1678

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 151/702 (21%), Positives = 264/702 (37%), Gaps = 51/702 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           AD  Q L  L+ + KRP  YIG  +  +                      GL+ +  E++
Sbjct: 129 ADKYQKLTQLEHIIKRPDTYIGSIEKTTQQMWVYDSATESMEFREVTYVPGLYKIFDEIV 188

Query: 50  DNAID-----ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
            NA D     E++    D I +T++ + G  +V +NGRGIP ++H +E I   E+I   L
Sbjct: 189 VNAADNKQNDENM----DEIRITVDRESGVISVWNNGRGIPIEVHSKEQIFVPELIFGHL 244

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVV 161
                ++    KV+GG +G G  + N  S+   +     R+G  Y+ ++   +       
Sbjct: 245 LTSSNYDDGQMKVTGGRNGFGAKLCNVFSTEFTIETCDSRQGKKYQQTWTENMSKMGKAK 304

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
             ++  D  T+VTF P    F ++  + D      R +  L  + ++++    S  P   
Sbjct: 305 ITASKVDDYTKVTFKPDYKKFGMEGMDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPIR- 363

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                  +       +R ++        +  S  +   ++    +DG  + V  F N+I 
Sbjct: 364 NFKKYMEMYTKAIKKERGEEATNDKSEIVTAS-PDPRWEVGFTVSDGSFQQV-SFVNSIA 421

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   +        E      K   ++     R      ++  + +P F+S
Sbjct: 422 TTSGGTHVNYIADQI---CNRLAEAVKKKNKQGATLKASQIRNHIFIFVNALIVNPAFTS 478

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE+L +   +   +  +++     + +  +   I+      A  +       R     
Sbjct: 479 QTKEQLTTKPSQFGSKCILDEDFYKKVLKTEVMTNILHFAEKKADQILKKTDGGRRSRMN 538

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
              L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+L
Sbjct: 539 NPKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLL 592

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A  D++  + EI  + + +G    ++  D   LRY  ++IMTD D DG+HI+ LL+
Sbjct: 593 NVRDASIDQISKNAEIQNIKSFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLI 652

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            F   Q PSL+      I    P+  + +G      K +         Q   E       
Sbjct: 653 NFLQVQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKSKSFFTMPEYEQWKEEHKYDRTW 712

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                         D  +    L +     H     E  +I   F+ +   E       +
Sbjct: 713 QHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQDHEAQLIDLAFSKKKADER-KEWLRQ 771

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                       + ++   IN   IL            V++G
Sbjct: 772 YKPGTFLDHSTKQITYTDFINKELILFSMADNQRSIPSVVDG 813


>gi|330444051|ref|YP_004377037.1| DNA gyrase B [Chlamydophila pecorum E58]
 gi|328807161|gb|AEB41334.1| DNA gyrase B [Chlamydophila pecorum E58]
          Length = 601

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 165/606 (27%), Positives = 272/606 (44%), Gaps = 54/606 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           ++Y   SI  L  L+ ++ R  MYIG     S    G++ +  EV+DNAIDE + G+   
Sbjct: 2   TTYSEASIISLASLEHIRLRAGMYIGRLGDGSQPEDGIYTLFKEVVDNAIDEYIMGHGSS 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT--RLHAGGKFNQKSYKVSGGLH 121
           + +T + + + TV D GRGIP             +I    +++ G K+ +  +  S GL+
Sbjct: 62  LEIT-SKENTLTVRDYGRGIPLGK----------LIDCASKINTGAKYTEDVFHYSVGLN 110

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+  VNALSS   +R  R     +  +  G+L        S  +  GTEV+F P ++I
Sbjct: 111 GVGLKAVNALSSEFTIRSIRNKKSLKAYYRQGVLQE--TQQSSTKDPNGTEVSFTPDAEI 168

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+   F  + L  ++R+ ++++  ++I    +            K G++           
Sbjct: 169 FANFRFQQEFLIKKIRQYTYVHPGLEILFNSES--------FVSKEGLKDLFHAEVPQGA 220

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
                 I  Q  +    +       D + E    F N     DGGTHLS  + A+ + I 
Sbjct: 221 LYPP--IFFQKDK----LSFIFSHLDTHTERYTSFVNGQETLDGGTHLSAFKEAVVKGIN 274

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            +  K+            +D REG    L+IK+  P F SQTK KL ++++R+ +   + 
Sbjct: 275 EFFGKN---------FATNDIREGLMGCLAIKISSPIFESQTKNKLGNTQIRTPLIKEIK 325

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC---- 417
            G+  +L      A ++++K+      R + +  +    ++          KL DC    
Sbjct: 326 QGIIEYLRSDKATAHLLLEKIKTNEKTRKSIQLIKQGI-KENQKKTHYKIPKLRDCKFHY 384

Query: 418 --SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
                  + S LF+ EG+SA  S    R    QA+  LRGK +NV      KM  + E+ 
Sbjct: 385 HEQSLYGEASSLFVTEGESASASILASRDPHTQAVFSLRGKPMNVFSLEEAKMYKNDELF 444

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L TALG           +LRY+KII+ TDADVDG HIR LL+TFF +   SL+  G ++
Sbjct: 445 YLATALGF----AKHGPQQLRYNKIILATDADVDGMHIRNLLITFFLKSFLSLVTGGHVF 500

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK-GVISKNDLRNFIDDA 594
           I++ PL+ +   +   Y   E+     +        +E+      G IS  + + FI   
Sbjct: 501 ILETPLFKLRNHEQTIYCYSEQEKLAAIQALGKKSALEITRFKGLGEISPKEFKAFIGPK 560

Query: 595 LKIDKL 600
           +++  +
Sbjct: 561 MRLAPV 566



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 35/110 (31%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGE-------------MNAS 748
            +  L  +   I        L  I ++G+K  + + R+KGLGE             M   
Sbjct: 505 PLFKLRNHEQTIYCYSEQEKLAAIQALGKKSALEITRFKGLGEISPKEFKAFIGPKM--- 561

Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRL---MGDEVEPRREFIQEN 795
                        L  V I+D      L S L   MG   + R++FI +N
Sbjct: 562 ------------RLAPVTISDP---SGLPSLLQFYMGKNTKERKQFILDN 596


>gi|328349755|emb|CBY89185.1| GyrB protein [Flavobacterium sp. R-37612]
          Length = 399

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 178/395 (45%), Positives = 254/395 (64%), Gaps = 7/395 (1%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNP 158
           MT++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P
Sbjct: 1   MTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS-- 215
           +   G      GT VTF P   IF+   +++YDTL  R+RELSFLN  + ++  DKR   
Sbjct: 61  VKQIGETT-KRGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSFLNKGITVTFTDKRELD 119

Query: 216 --PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
                         G++ ++ YLD ++ P++   I +   +  I +++A+ +N  Y EN+
Sbjct: 120 KDGNFVSEVFHSDEGLKEYIRYLDSNRDPIIAHVISMDNDKGEIPVEVALIYNTSYTENI 179

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K
Sbjct: 180 FSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVK 239

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA+
Sbjct: 240 VQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAK 299

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPL
Sbjct: 300 KAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILPL 359

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           RGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 360 RGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTE 394


>gi|317420194|emb|CBW30254.1| gyrase B subunit [Pseudoalteromonas elyakovii]
          Length = 381

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 227/383 (59%), Positives = 295/383 (77%), Gaps = 6/383 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL V G +   TGTE+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGDSE-TTGTELRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV Y
Sbjct: 60  WPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIQAFVEY 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L+R+K P+ +        R+   IS++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 LNRNKTPIHKGVFHFTHEREEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           SALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 SALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  + +  + +L E+P +AKI+V K++DAS  R+AAR+AR++TRRKG +D+A LP
Sbjct: 239 VKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 299 GKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINK 494
           QE+ TLITALG GIG+D ++  K
Sbjct: 359 QEVATLITALGCGIGRDEYNPEK 381


>gi|262090296|gb|ACY25089.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 378

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 228/381 (59%), Positives = 289/381 (75%), Gaps = 3/381 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS  
Sbjct: 1   SVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDT 59

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+  
Sbjct: 60  LFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHP 117

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++
Sbjct: 118 KVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 177

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+
Sbjct: 178 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 237

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  S
Sbjct: 238 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 297

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GI
Sbjct: 298 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 357

Query: 486 GQDSFDINKLRYHKIIIMTDA 506
           G+D ++ +KLRYH IIIMTDA
Sbjct: 358 GRDEYNPDKLRYHNIIIMTDA 378


>gi|332800611|emb|CBY89795.1| GyrB protein [Flavobacterium xanthum]
          Length = 395

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 177/390 (45%), Positives = 251/390 (64%), Gaps = 7/390 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELS+LN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSYLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEVFHSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVKVQEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPLRGKIL
Sbjct: 301 VQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRNFQAILPLRGKIL 360

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQD 488
           NVE+A   K+  ++EI  + TALG  IG +
Sbjct: 361 NVEKAMHHKVFENEEIRNIFTALGVTIGTE 390


>gi|307947820|gb|ADN96149.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 386

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 227/389 (58%), Positives = 299/389 (76%), Gaps = 4/389 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVS++NALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F 
Sbjct: 1   SGGLHGVGVSMINALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS D FS  +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL
Sbjct: 60  PSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSA
Sbjct: 118 NRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY+E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLA
Sbjct: 238 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMT 504
           TLITALG GIG+D ++ +K RYH IIIMT
Sbjct: 358 TLITALGCGIGRDEYNPDKTRYHNIIIMT 386


>gi|296809619|ref|XP_002845148.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
 gi|238844631|gb|EEQ34293.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
          Length = 1676

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 144/699 (20%), Positives = 255/699 (36%), Gaps = 43/699 (6%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDT----------------------DGESGLHHMIYEV 48
            ++  Q +  L+ + KRP  YIG                            GL+ +  E+
Sbjct: 125 SSEKYQKITQLEHILKRPDTYIGSVERTEKQMWVYNSTTELMEYREVSYVPGLYKIFDEI 184

Query: 49  LDNAIDESLEG-YADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D        + I VTL+ +G   +V +NGRGIP ++H +E I   E+I   L   
Sbjct: 185 LVNAADNKQNDPNMNEIRVTLDKEGGEISVWNNGRGIPVEVHSKEKIYIPELIFGHLLTS 244

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGS 164
             +N +  KV+GG +G G  + N  S+   +     R    +++++ N +          
Sbjct: 245 SNYNDQQEKVTGGRNGYGAKLCNIFSNEFTIETADSRTKKKFKLTWTNNMSAMGKPKITE 304

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              D  T+VTF P    F ++  + D      R +  +  +   ++    +  P +    
Sbjct: 305 CKGDDYTKVTFKPDFAKFGMEGMDDDFEALVKRRVYDMAGTCGTAVKLNGTKIPVKSFKK 364

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y       +       +        I     +   ++    +DG  + V  F N+I    
Sbjct: 365 YMEMYTKAIKTERG--EDPTSDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTS 421

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++ +   +        +      K   ++     +      ++ ++ +P F+SQTK
Sbjct: 422 GGTHVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNCQIVNPAFTSQTK 478

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L +   +   +  V+D     + +  +   I+      A  +       R        
Sbjct: 479 EQLTTRSSQFGSKCIVSDEFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPK 538

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVE 461
           L  A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV 
Sbjct: 539 LTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVR 592

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            A  D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ + 
Sbjct: 593 DASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYL 652

Query: 522 FRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
               P+L+   GFL     P+  + +G        +         +            K 
Sbjct: 653 QVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKETHAHDKKWQKK 712

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  D  +    L K     H     E  +I   F+ +   E       +   
Sbjct: 713 YYKGLGTSSTEDAQIYFQDLDKHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKP 771

Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                    + ++   IN   IL            V++G
Sbjct: 772 GTYLDHSTEQITYSDFINKELILFSMADNIRSIPSVIDG 810


>gi|281486955|gb|ADA71025.1| DNA gyrase subunit B [Aeromonas popoffii]
          Length = 375

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 222/377 (58%), Positives = 287/377 (76%), Gaps = 2/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFW 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL
Sbjct: 61  PSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYL 118

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 119 NQNKTPIYPKVFHFSIEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 179 TRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 238

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 239 EQAMGEKLGEFLLENPGDAKIVVNKIVDAARAREAARKARELTRRKGALDIAGLPGKLAD 298

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 299 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 358

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 359 LITALGCGIGRDEYNPD 375


>gi|84310532|gb|ABC55414.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 188/392 (47%), Positives = 271/392 (69%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YK   GLHGV  SVVNALS+ L + + R+G I+  ++  G+    L + G   + TG
Sbjct: 1   GSGYKYPAGLHGVSASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K R HK++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARCHKVV 390


>gi|19909589|dbj|BAB86990.1| DNA gyrase subunit B [Brevundimonas subvibrioides]
          Length = 401

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 251/401 (62%), Positives = 308/401 (76%), Gaps = 10/401 (2%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG----- 166
            SYKVSGGLHGVGVSVVNALS WLKL I R G  +EM F  G     L +TG A      
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSDWLKLVIYRNGKRHEMRFERGDTVESLRMTGDAPLRDSG 60

Query: 167 -----NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
                  +GTEVTF PS   FS  DF+  TL+HRLREL+FLNS V I L D R  EP E 
Sbjct: 61  GRAGQPLSGTEVTFYPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLRDDRGAEPFEE 120

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
            + Y+GG+EAFV +LD+ K P+++  I I+G ++ I +DLA+ WND YHE +LCFTNNIP
Sbjct: 121 ILHYEGGVEAFVRHLDKSKTPILKDVIVIRGKKEGIELDLALWWNDSYHETMLCFTNNIP 180

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHLS  R++LTR + SY++ +  ++K+K SV G+D REG T VLS+K+PDP+FSS
Sbjct: 181 QRDGGTHLSAFRTSLTRVMGSYIDTAGAARKEKVSVSGEDAREGLTCVLSVKVPDPKFSS 240

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEVR  VE+   +GLS W EEHP+EAK++V K+++A+  R+AAR+ARDLTRR
Sbjct: 241 QTKDKLVSSEVRPAVEALCTEGLSTWFEEHPVEAKLVVGKIIEAAAAREAARKARDLTRR 300

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K  ++I+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVE
Sbjct: 301 KTAMEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVE 360

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           RARFD+MLSS  IGTLI ALGTGIG+D F+ +KLRYHKII+
Sbjct: 361 RARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 401


>gi|301626919|ref|XP_002942632.1| PREDICTED: DNA topoisomerase 2-alpha, partial [Xenopus (Silurana)
           tropicalis]
          Length = 1458

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 142/733 (19%), Positives = 271/733 (36%), Gaps = 75/733 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 31  YQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDEGLNCRDVTFVPGLYKIFDEILVNAA 90

Query: 54  DESLEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I +T+N +  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 91  DNKQRDPTMSCIKITINPESNTVSVWNNGKGIPVVEHKVEKVFVPALIFGQLLTSSNYDD 150

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++ + + D           + 
Sbjct: 151 DQKKVTGGRNGYGAKLCNIFSNKFTVETACREYKKVFKQTWTDNMSDAADAKIKPFDGED 210

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++  +  V++ L  KR            
Sbjct: 211 YTCITFQPDLSKFKMQILDKDIVALMSRRAYDVAGSSKGVKVFLNGKR---------LPI 261

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    ++K     +P+++     N   ++ +  ++   + +  F N+I    GG
Sbjct: 262 SGFRSYVDLYLKNKLDETGNPLKVMHELVNDRWEICLTMSEKGFQQI-SFVNSIATTKGG 320

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE 
Sbjct: 321 RHVDYVADQIIAKLIEVVKKKN---KGGIAVKPFQVKNHMWVFVNSLIENPTFDSQTKEN 377

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 378 M-TLQSKSFGSKCTLSEKFIKGATNCGIVESILNWVKFKAQ---TQLNKKCSSVKHTKIK 433

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   R+     L L EGDSA      G    GR R    + PLRGK+LNV 
Sbjct: 434 GIPKLDDANDAGSRNSLDCTLILTEGDSAKTLAVSGLGVVGRDR--YGVFPLRGKLLNVR 491

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D      LRY K++IMTD D DG+HI+ LL+
Sbjct: 492 EASHKQIMENAEINNIIKIVGLQYKKNYDDNESLKTLRYGKVMIMTDQDQDGSHIKGLLI 551

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
            F     PSL+ + FL     P+  +T+ K           E++  N    +  ++    
Sbjct: 552 NFIHHNWPSLLKHRFLEEFITPIIKVTKSKQELSFYSIPEFEEWKNNTDSHKTWKIKYYK 611

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
               S          + +  +   D   +      E  +          ++        L
Sbjct: 612 GLGTS---------TSKEAKEYFSDMERHRIPFKYEGPIDDAAITLAFSRKKVDDRKEWL 662

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
               NF+ ++ E+  HG              G   +++     I      +    +++I 
Sbjct: 663 T---NFMQDRRERRLHGLPEEY-------LYGKSTKYLTFNDFIN-KELMHVDYVADQII 711

Query: 699 ENYLTILSLICNG 711
              + ++     G
Sbjct: 712 AKLIEVVKKKNKG 724


>gi|222872663|gb|EEF09794.1| predicted protein [Populus trichocarpa]
          Length = 167

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 99/165 (60%), Positives = 125/165 (75%), Gaps = 1/165 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+N    +Y A SI++LKGL+AV+ RP MYIGDTD  +GLHHM++EV+DNAIDE+L GY
Sbjct: 1   MSENT-TENYGAGSIKVLKGLEAVRTRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAA+VIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CKDIIVTIHADNSVSVQDDGRGIPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           HGVG+SVVNALS  L+L I+R+G ++E  +  G    PL V G  
Sbjct: 120 HGVGISVVNALSDKLQLTIRRQGKVHEQFYHLGDPQEPLSVIGET 164


>gi|308153114|dbj|BAJ22146.1| DNA gyrase subunit B [Kibdelosporangium aridum]
          Length = 401

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 178/403 (44%), Positives = 259/403 (64%), Gaps = 15/403 (3%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SY VSGGLHGVG+SVVNALS+ L++ ++R+G ++  S+ +     P+   G A   TGT 
Sbjct: 1   SYAVSGGLHGVGISVVNALSTRLEVVVQRDGYVWTQSYRDSEPVAPVAQ-GEATETTGTS 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---------- 222
           +TF P   IF    FN +T+  RL+E++FLN  + I L D+R  E               
Sbjct: 60  ITFWPDPQIFETVTFNAETVARRLQEMAFLNKGLTIVLRDERVSEEEAAEDAEGQAARIK 119

Query: 223 ---MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y GG+E FV +++  ++ + +S I  +     + +++AM+WN GY E+V  F N 
Sbjct: 120 ERTYHYPGGLEDFVKHINHAREAVHKSVIAFEAKGTGLEVEIAMQWNTGYSESVYTFANT 179

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALTR +  Y       K+   ++ G+D REG  +++SIK+ +P+F
Sbjct: 180 INTPEGGTHEEGFRAALTRVVNVYARDKKLLKEKDTNLTGEDVREGLAAIVSIKLAEPQF 239

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK+KL ++E ++ V++  N+ L  W E +P EAK IV K + ++  R AAR+A++L 
Sbjct: 240 EGQTKQKLGNTEAKTFVQTTSNEHLQHWFEANPAEAKTIVTKAVSSAQARIAARKAKELV 299

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG LDI  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR    QAILP+RGKI+N
Sbjct: 300 RRKGALDIGGLPGKLKDCRSTNPEECELYIVEGDSAGGSAKEGRDSRFQAILPIRGKIIN 359

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR D++L + E+ +LITALGTGI  D FD++KLRYHKI++
Sbjct: 360 VEKARIDRVLKNTEVQSLITALGTGI-HDEFDLSKLRYHKIVL 401


>gi|327283546|ref|XP_003226502.1| PREDICTED: DNA topoisomerase 2-beta-like [Anolis carolinensis]
          Length = 1640

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 148/735 (20%), Positives = 271/735 (36%), Gaps = 80/735 (10%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------G 40
           S N           Q    L+ +  RP  YIG  +  +                     G
Sbjct: 54  SKNDSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPVTQLMWVFDEDIGMNCREITFVPG 113

Query: 41  LHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEV 98
           L+ +  E+L NA D          I ++++ +    ++ +NG+GIP   HK E +    +
Sbjct: 114 LYKIFDEILVNAADNKQRDKNMTCIKISIDAESNIISIWNNGKGIPVVEHKVEKMYVPAL 173

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILD 156
           I  +L     ++    KV+GG +G G  + N  S+   +    +   +  + +++N ++ 
Sbjct: 174 IFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWLNNMMK 233

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDK 213
                      D  T VTF P    F ++  + DT   +  R  +L+     V+I    K
Sbjct: 234 TSDPKIKHFEGDDYTCVTFQPDLAKFKMEKLDKDTVALMTRRAYDLAGACKGVKIMFNGK 293

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           +             G  ++V    + K       +++     N   D+ +  ++   + V
Sbjct: 294 K---------LPVNGFRSYVDLYVKDKLDETGVALKVTHELANERWDVCLTLSEKGFQQV 344

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GG H+  +   +  ++   V+K   +     SV     +      ++  
Sbjct: 345 -SFVNSIATTKGGRHVDYVVDQIVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCL 400

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P F SQTKE + + + +S                +    + I+  V   +       
Sbjct: 401 IENPSFDSQTKENM-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQL 456

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQ 448
             +  + +   +          D   +      L L EGDSA      G    GR R   
Sbjct: 457 NKKCSSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--Y 514

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTD 505
            + PLRGKILNV  A   +++ + EI  +I  +G    +   D      LRY KI+IMTD
Sbjct: 515 GVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTD 574

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
            D DG+HI+ LL+ F     PSL+ +GFL     P+   ++ K           +++  +
Sbjct: 575 QDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELAFYSIPEFDEWKKH 634

Query: 566 QSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
               +     +    G  +  + + +  D  +   L +   P       + A I+  F+ 
Sbjct: 635 MENHKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSK 688

Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFS 684
           +   +    L        NF+ ++ ++  HG       L ++   G   + +     I  
Sbjct: 689 KKIDDRKEWLT-------NFMEDRRQRRLHG-------LPEQFLYGTATKHLTYNDFIN- 733

Query: 685 FGSKYKRIFSNRIEE 699
              K   +FSN   E
Sbjct: 734 ---KELILFSNSDNE 745


>gi|126341720|ref|XP_001380856.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase
           II, beta isozyme) [Monodelphis domestica]
          Length = 1756

 Score =  336 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 190 YQKKTQLEHILLRPDTYIGSVEPLTQSMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 249

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I ++++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 250 DNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 309

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            D 
Sbjct: 310 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWVNNMMKTSEPKVKYFDGDD 369

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 370 YTCITFQPDLLKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 420

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 421 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 479

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 480 RHVDYVVDQIVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFVNCLIENPTFDSQTKEN 536

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 537 M-TLQPKSFGSKCQLSEKFFKAASNCGIIESILNWVKFKAQ---TQLNKKCSSVKYSKIK 592

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 593 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 650

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 651 EASHKQIMENAEINNIIKIVGLQYKKSYEDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 710

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 711 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 770

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 771 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 822

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 823 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 874

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 875 VDGFKPGQRKVLFTCFKRNDKREVK 899


>gi|149729823|ref|XP_001492165.1| PREDICTED: similar to DNA topoisomerase (ATP-hydrolysing) [Equus
           caballus]
          Length = 1630

 Score =  336 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 62  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 121

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 122 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 181

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 182 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 241

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 242 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 292

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 293 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 351

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 352 RHVDYVVDQVVSKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 408

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 409 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 464

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 465 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 522

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 523 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 582

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 583 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 642

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 643 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 694

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 695 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 746

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 747 VDGFKPGQRKVLFTCFKRNDKREVK 771


>gi|9971291|dbj|BAB12463.1| DNA gyrase B subunit [Oceanospirillum beijerinckii]
          Length = 383

 Score =  336 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 226/385 (58%), Positives = 289/385 (75%), Gaps = 3/385 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L L + R G ++E  +I+G+   PL V G       TE 
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLTLTVWRSGKVHEQVYIHGVPQEPLRVIGETTKTG-TET 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R+ +       Y+GG+ AFV
Sbjct: 60  RFHPSAETFSNIEFHYDILAKRLRELSFLNSGVSIILIDERTGKS--DNFKYEGGLSAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+++K  L           D + +++A++WND Y EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 118 EYLNQNKTALNSVFHFSSEREDGVGVEVALQWNDSYQENIYCFTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AALTRTLNSYMEQDPKIKKDKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +   LS +L+E+P EAK IV K+L+A+  R+AAR+AR++TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRLLSDYLQENPNEAKSIVNKMLEAARAREAARKAREMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSS E
Sbjct: 298 LADCQEKDPALSELYLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAE 357

Query: 474 IGTLITALGTGIGQDSFDINKLRYH 498
           +GTLITA+G GIG++ F+ +KLRYH
Sbjct: 358 VGTLITAMGCGIGREEFNPDKLRYH 382


>gi|302844478|ref|XP_002953779.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f.
           nagariensis]
 gi|300260887|gb|EFJ45103.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f.
           nagariensis]
          Length = 1126

 Score =  336 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 147/698 (21%), Positives = 262/698 (37%), Gaps = 66/698 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDT--------------------DGESGLHHMIYEVLDNAID 54
            Q    L+ +  RP  YIG T                    +   GL+ +  E+L NA D
Sbjct: 2   YQKKTQLEHIILRPDTYIGSTERQPNTIWVHNGQKMELKTVNYPPGLYKIFDEILVNAAD 61

Query: 55  ESLEGYA-DIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
             +     D I V ++  + S  V ++GRGIP ++HKEEG+   E+I   L     +N  
Sbjct: 62  NKVRDPTMDTIKVDVDPANNSIRVWNSGRGIPVEVHKEEGVYVPELIFGHLLTSSNYNDS 121

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGILDNPLVVTGSAG-ND 168
             K++GG +G G  + N  S+   +    +G     Y+ +F N +             +D
Sbjct: 122 EKKITGGRNGYGAKLANIFSTEFTVETC-DGSRQRRYKQTFTNNMQQKGTPKITDCKASD 180

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTL---QHRLREL-SFLNSSVQISLIDKR-SPEPREITM 223
             T +TF P    F + + + D +   + R+ ++   L   V++    +R S +  +  +
Sbjct: 181 NWTCITFKPDLAKFGMSELDEDIVSVLRRRVFDMAGVLGKGVKVFYNGERLSIKSFQEYV 240

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
               G +   ++          + I     R N   ++ +   DG  + V  F N I  +
Sbjct: 241 DMYLGPKVKRTWFRG---VPHDNGIPRFCERLNDRWEICISLTDGSFQQV-SFVNAISTQ 296

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH+  + + +   +   +EK         ++     R      L+  + +P F SQ 
Sbjct: 297 KGGTHVEYIVNQI---VKHCIEKLSKKTAKTTAIKPAMVRNHLWIFLNCYVENPAFDSQA 353

Query: 344 ---KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-IVKKVLDASMVRDAARRARDLT 399
              K  L++ E  ++  +         +       K  +   ++  +  +      +   
Sbjct: 354 SPFKIVLLTKETLTLRSTSFGSKCELPIPLLDKVLKAGLSDSIIKYAEFKSQKDLKKGDG 413

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGK 456
            ++  L   +      D          L L EGDSA   A  G     R +  + PLRGK
Sbjct: 414 VKRSRLVGMAKLDDANDAGGPRSTDCTLILTEGDSAKSLAVSGLGVVGRNHYGVFPLRGK 473

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           +LNV  A   ++ ++QEI  +   +G   G+     + LRY  ++IMTD D DG+HI+ L
Sbjct: 474 LLNVREASAVQIAANQEIQNIKQIMGLQHGRVYDSTSSLRYGHLMIMTDQDHDGSHIKGL 533

Query: 517 LLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIE 573
           ++ F     PSL+   GF+     P+    RG+  +        E +   ++ + S    
Sbjct: 534 IMNFMHSFFPSLLKIPGFMLEFITPIVKARRGRETKVFYTMPEYEAWKESLDNNTSGWDI 593

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +    G  +K +            +       +  +                 ++    
Sbjct: 594 KYYKGLGTSTKEE----------AQEYFSRLNLHRKEFVWTGDEDGDAIELAFSKKRVDD 643

Query: 634 LASKLAN-----RLNFIAEKSEKSWHGSINNSDILVKR 666
               L+N      L+  AEK   S+   IN   IL  R
Sbjct: 644 RKEWLSNFVPGTYLDQSAEKI--SYADFINKELILFSR 679


>gi|126035276|gb|ABN72391.1| gyrase B subunit [Pseudomonas aeruginosa]
          Length = 384

 Score =  336 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 220/387 (56%), Positives = 293/387 (75%), Gaps = 4/387 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R   ++E  + +G+   PL   G   + +GTEV
Sbjct: 1   YKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS + FS   F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++AFV
Sbjct: 60  HFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            YL+ +K  + +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G 
Sbjct: 118 EYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPG
Sbjct: 238 KTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSSQ
Sbjct: 298 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQ 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHK 499
           E+GTLITALG GIG++ ++I+KLRYH 
Sbjct: 358 EVGTLITALGCGIGREEYNIDKLRYHN 384


>gi|196230803|ref|ZP_03129664.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Chthoniobacter flavus Ellin428]
 gi|196225144|gb|EDY19653.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Chthoniobacter flavus Ellin428]
          Length = 613

 Score =  336 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 170/656 (25%), Positives = 279/656 (42%), Gaps = 63/656 (9%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLEGYADI 63
           S+Y   SI+ L  L+ ++ RP MYIG          G++ ++ E +DN IDE   G+   
Sbjct: 3   SNYTEASIKTLSSLEHIRLRPGMYIGRLGNGAHAEDGIYVLLKETVDNCIDEFTMGFGKK 62

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +  + S  V D GRGIP        +    +I T    G K++ ++++ + GL+GV
Sbjct: 63  IEVEV-EERSVRVRDYGRGIPLGKL----VDCVSIINT----GAKYDSETFQKAVGLNGV 113

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G   VNAL+   + +  REG+   + F  G L +   VT       GT + F P   +F 
Sbjct: 114 GQKAVNALALSYRAQAIREGDTKVVEFEKGRLKSESKVT-KTTERNGTFIEFTPDEALFG 172

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F  + ++  L   +FLN  + ++L  K            + G++  ++        
Sbjct: 173 KDFRFRAEFIEDMLWNYAFLNRGLTLTLNGKP--------FRSQNGLKDLLTKELNG--E 222

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +   I ++G      I++AM   + Y E    F N      GGTHL+  R AL   + +
Sbjct: 223 PLYPIIHLEGDD----IEIAMTHGNHYGEEYWSFVNGQHTTMGGTHLAAFREALVATVRN 278

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-------V 355
           + +K              D R+   + +S+++ +P F SQTK KL S+E+          
Sbjct: 279 HFKK---------DYDAADIRQSIDAAVSVRVQEPVFESQTKTKLGSTEIGPGGPSLKEF 329

Query: 356 VESFVNDGLSAWLEEHPLEAKII---VKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           V  F+   L  +L ++   A+II   +++  +        R       +K  L    L  
Sbjct: 330 VGKFMQQALDTFLHKNREVAEIIKGKIEQNEEERKELAGIRNIAKERAKKASLHNRKLRD 389

Query: 413 KLADC--SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
                       ++S LF+VEGDSA GS    R  + QA+  L+GK LN        +  
Sbjct: 390 CRLHLGDRNPRAEESTLFIVEGDSAAGSLTSTRDVQTQAVFALKGKPLNTFGLTKKIIYE 449

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++E   L +AL    G     ++ LRY++I+I TDADVDG HIR LL++FF +  P +I 
Sbjct: 450 NEEFHLLQSALNIEDG-----LDGLRYNRIVIATDADVDGMHIRLLLISFFLQYFPDVIR 504

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           N  LYI++ PL+ +   K  QY   E+  +  +     S EI  F     + +       
Sbjct: 505 NNHLYILQTPLFRVRNKKVTQYCYSEQEKQAAMARLGASHEITRFKGLGEISAGEFKDFI 564

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
            ++            P +         +   F  ++  E    +   L    + I 
Sbjct: 565 GENI--------RLDPVNLHHLYSSDELLTFFMGKNTPERQEFIIDNLRVEKDLIE 612


>gi|194475602|gb|ACF74548.1| DNA gyrase subunit B [Duganella zoogloeoides]
          Length = 406

 Score =  336 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 223/409 (54%), Positives = 288/409 (70%), Gaps = 20/409 (4%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NP 158
           Q SYKVSGGLHGVGVS VNALS  LKL I+R+G ++ M F  G+              +P
Sbjct: 1   QNSYKVSGGLHGVGVSCVNALSKTLKLTIRRDGKVHFMEFARGVPVDRELEMRDGFAVSP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + V G   +  GT+V F     IF   +F+Y+ L  R+RELSFLN+ V I L D+R+ + 
Sbjct: 61  IKVIGDT-DKRGTDVHFWADETIFGNVEFHYEILAKRIRELSFLNNGVNIRLSDQRTGKE 119

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENV 273
                 ++GG   FV Y+++ K  L  +  +  G R      NIS+D++M+WND Y+E V
Sbjct: 120 --DIFAFEGGTRGFVEYINKAKTVLHPTVFQATGERMSDQNTNISVDVSMQWNDAYNEQV 177

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           LCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E+   +KK K  + GDD REG T VLS+K
Sbjct: 178 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEEHEFAKKAKVEISGDDMREGLTCVLSVK 237

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +P+P+FSSQTK+KLVSSEVR  VE  V   L+ +L+E P +AKII  K+++A+  R+AAR
Sbjct: 238 VPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAAR 297

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +ARDLTRRKGV+D   L  KLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPL
Sbjct: 298 KARDLTRRKGVMDGLGLSAKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPL 357

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           RGK+LNVE+ARF+KMLSS++I TLI  LGT IG D F++ KLRYH+III
Sbjct: 358 RGKVLNVEKARFEKMLSSEQITTLIATLGTSIGPDEFNVEKLRYHRIII 406


>gi|238477927|gb|ACR43657.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|238477934|gb|ACR43660.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|238477938|gb|ACR43662.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|269849459|gb|ACZ49798.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|281486949|gb|ADA71022.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|281486951|gb|ADA71023.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|291192908|gb|ADD83429.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|291192924|gb|ADD83437.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 374

 Score =  336 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 224/377 (59%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|319411861|emb|CBQ73904.1| probable DNA topoisomerase II [Sporisorium reilianum]
          Length = 1513

 Score =  336 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 140/687 (20%), Positives = 253/687 (36%), Gaps = 75/687 (10%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           +    + +Y     Q L  L+ + KRP  YIG  +  +                      
Sbjct: 95  TSKSASETY-----QKLSQLEHILKRPDTYIGSVEKHTEKLWVYDKTKKQMAYRETTYVP 149

Query: 40  GLHHMIYEVLDNAIDE-SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           G + +  E+L NA D  + +   + + V +N D GS  V +NG GIP ++H +E +   E
Sbjct: 150 GFYKIFDEILVNAADNKARDLNMNHLKVEINRDEGSIMVWNNGHGIPVEMHDKERVYIPE 209

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGIL 155
           +I   L     ++    KV+GG +G G  + N  S+   +     +    Y+ +F   + 
Sbjct: 210 LIFGHLLTSSNYDDNEAKVTGGRNGYGAKLANIYSTEFTVETADSKNQCKYKQTFSKNMH 269

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLI 211
                 +T  + ++  T +TF P   +F ++  +      +  R+ +++     ++++L 
Sbjct: 270 DKGKPKITKHSKSEEYTCITFKPDLALFGMESIDDHMEALMLKRVYDMAGTVKGIKVTLN 329

Query: 212 DKRSPEPREITMFYK--------GGIEAFVSYLDRHKK---PLMQSPIRIQGSRDNISID 260
            +                     GG                    + I         + +
Sbjct: 330 GEALKVKNFKQYVEMYVTAINELGGKTDNTEEGAADVPTGAAPKPAIIYESTVDKGRNWE 389

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A   +DG    V  F NNI    GG H+  +   +  ++  +V+K          V+ +
Sbjct: 390 VAFAVSDGEFRQV-SFVNNIATIKGGKHVDHVADQVISRLIDHVKKDK----KTGKVMPN 444

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-IV 379
             R+     ++ ++ +P F  QTK      E  ++ +S      +   E      K  +V
Sbjct: 445 QVRQQLWVFVNCQIVNPTFDGQTK------ETLTLKQSAFGSKWTLTDEFARKVIKSGVV 498

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA---- 435
             ++  +  +      +    ++  +          +   R  K   L L EGDSA    
Sbjct: 499 DNIVSFARFKQDQALKKTDGHKRTRITNIPKLEDANNAGGRKAKDCTLILTEGDSAKSLA 558

Query: 436 -GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
             G  + GR   N  + PLRGK+LNV  A  D+++ + EI  +   LG   G+   D+N 
Sbjct: 559 VAGIVEVGRD--NYGVFPLRGKLLNVREASHDQIMKNAEIKAIKEILGLQHGKQYLDVNS 616

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYV 553
           LRY  I+IMTD D DG+HI+ L++ F     PSL+   GFL     P+    +GK     
Sbjct: 617 LRYGSIMIMTDQDHDGSHIKGLIINFLDHFYPSLLRIPGFLVEFITPIVKCRKGKQELSF 676

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 E +  +             KG   K        D     K  +    +     +
Sbjct: 677 FTIPEYETWRDSH---------NGGKGWHIKYYKGLGTSDPQDAKKYFRALEKHKLPFDV 727

Query: 614 EQAVISGVFNCESDQEINVSLASKLAN 640
            Q     + +   +++        L  
Sbjct: 728 TQEGDRELIDLAFNKKKADDRKEWLRQ 754


>gi|4996814|dbj|BAA78452.1| subunit B protein of DNA gyrase [bacterium rM14]
          Length = 321

 Score =  336 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 163/325 (50%), Positives = 211/325 (64%), Gaps = 32/325 (9%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKE 90
              +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V+DNGRGIPT     D H E
Sbjct: 1   SDGTGLHHLVFEVVDNSIDEALAGYCDDIAVTIHADGSLSVTDNGRGIPTGVKMDDKH-E 59

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
              SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G ++++ F
Sbjct: 60  PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHQIEF 119

Query: 151 INGILD------------NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLR 197
             G               +P+ VTG    D GT V FLP  +IF    DF+Y+TL  RLR
Sbjct: 120 ARGAAQNRQIEVVDGFETSPMKVTG-TTEDRGTSVRFLPDVEIFGDNHDFHYETLAKRLR 178

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-- 255
           ELSFLN+ V+I LID+R+ +         GG+  FV ++   KK L  +P    GSR   
Sbjct: 179 ELSFLNNGVRIRLIDERTGKE--DDFSGAGGVLGFVKFISTGKKVLHPTPFYASGSRPAE 236

Query: 256 --------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                    I +++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +
Sbjct: 237 TYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADN 296

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSI 332
             +KK K  V GDD REG   VLS+
Sbjct: 297 ELAKKAKVEVTGDDMREGLCCVLSV 321


>gi|19909711|dbj|BAB87051.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 310

 Score =  336 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 150/312 (48%), Positives = 203/312 (65%), Gaps = 24/312 (7%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGI 93
            +GLHH+++EVLDN+IDE+L GY   I VT++ D S ++ DNGRGIP     D   E   
Sbjct: 1   GTGLHHLVFEVLDNSIDEALAGYCTEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKR 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAE+ MT LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G ++ + F  G
Sbjct: 61  SAAEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKG 120

Query: 154 IL-----------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
            +                  +P+ V G A +  GTEV FL   +IF+  +F+Y+ L  R+
Sbjct: 121 DVQNRIIETVPGPDGQPVEVSPMKVIG-ATDKRGTEVHFLADEEIFTNVEFHYEILSKRI 179

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLN+ V I L+D+R+ +       + GG++ FV Y++R K  L  +       +D 
Sbjct: 180 RELSFLNNGVHIKLVDQRTGKE--EDFAFSGGVKGFVEYINRAKTVLHPNIFYANTEKDG 237

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  
Sbjct: 238 IGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKAKVE 297

Query: 317 VIGDDCREGFTS 328
             GDD REG   
Sbjct: 298 TTGDDMREGLAV 309


>gi|299755855|ref|XP_001828929.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298411411|gb|EAU92936.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 1557

 Score =  336 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 138/682 (20%), Positives = 271/682 (39%), Gaps = 50/682 (7%)

Query: 18  LKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAIDE 55
           L  L+ + KRP  YIG  +  +                      G   ++ E+L NA D 
Sbjct: 91  LTQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIVDEILVNAADN 150

Query: 56  SLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
            +     D + VT++  +G+ +V +NGRGIP ++H +E +   E+I   L     ++   
Sbjct: 151 KINDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTSTNYDDDE 210

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFINGILD-NPLVVTGSAGNDTG 170
            K++GG +G G  + N  S    +    +     Y+ ++ + +       +T +   +  
Sbjct: 211 KKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITKNTRGEEY 270

Query: 171 TEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T +TF P    F +   + DT+   + R+ +++     V++ L D+R             
Sbjct: 271 TRITFRPDLKRFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDERLKIKNFKQYVEMY 330

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                 +  ++           I   + +   ++A   +       + F N+I    GGT
Sbjct: 331 VSSVQEAAAEKSGGAAQPKQTVIH-EQISDRWEIAYTLSTEGTFQHVSFANSIATSKGGT 389

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++ +   +++ + + + K         +V     R      +   + +P F SQTKE L
Sbjct: 390 HVNYIADQISKALVTSISKKN----KGATVKPAQIRNHMWLFVKSLIVNPTFDSQTKELL 445

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
                +   +  ++D     + +       IV  VL+ +  +   +  R    ++  L  
Sbjct: 446 TLPSSKFGSKPTISDEFIKKVAKSG-----IVDNVLNWAKFKADQQMKRADGTKRSRLLG 500

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKILNVERAR 464
            +      +   R  +   L L EGDSA   A  G     R+N  + PLRGK+LNV  AR
Sbjct: 501 LAKLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVREAR 560

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D+++ ++EI  +   +G    +D  + + LRY +++IMTD D DG+HI+ L++ F    
Sbjct: 561 HDQIMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGSHIKGLIINFLDHF 620

Query: 525 MPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            PSL+      +    P+  + +G  ++        E +L      +  +        + 
Sbjct: 621 YPSLLKIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEETP--DARKWESKYYKGLG 678

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            ++ ++  +   K++K +  F P  +    ++ +I   F+ +   E       +      
Sbjct: 679 TSEDKDAREYFSKMEKHMIPFAPTQEG---DRELIDLAFSKKKADER-KEWLRQFKPGTF 734

Query: 644 FIAEKSEKSWHGSINNSDILVK 665
                 E  +   IN   IL  
Sbjct: 735 LDHRLEEIPYSEFINKELILFS 756


>gi|119584762|gb|EAW64358.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_b [Homo sapiens]
          Length = 1643

 Score =  336 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 50  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 109

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 110 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 169

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 170 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 229

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 230 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKK---------LPV 280

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 281 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 339

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 340 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 396

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 397 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 452

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 453 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 510

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 511 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 570

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 571 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 631 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 682

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 683 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 734

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 735 VDGFKPGQRKVLFTCFKRNDKREVK 759


>gi|12644441|sp|Q44081|GYRB_ACIJO RecName: Full=DNA gyrase subunit B
 gi|4514421|dbj|BAA75409.1| DNA gyrase subunit B [Acinetobacter johnsonii]
          Length = 389

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 231/392 (58%), Positives = 289/392 (73%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I R G+I++  + +G    PL V     + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPVYPLTVV-GDTDTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--HAEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L         + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINQGKTHLNDIFHFTVQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           SQE+GTLITALG GIG++ ++ +KLRYHKIII
Sbjct: 358 SQEVGTLITALGCGIGREEYNPDKLRYHKIII 389


>gi|301060277|ref|ZP_07201143.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300445620|gb|EFK09519.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 218

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 108/218 (49%), Positives = 147/218 (67%), Gaps = 2/218 (0%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
            Q  +Y A  I++L+GL AV+KRPSMYIG+T  E GLHH++YEV+DN+IDE+L GY D I
Sbjct: 2   TQEQTYAASDIKVLEGLSAVRKRPSMYIGNTSFE-GLHHLVYEVVDNSIDEALAGYCDQI 60

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            + L  D S  + DNGRGIP D+H    + A EV+MT+LHAGGKF+ K+Y+VSGGLHGVG
Sbjct: 61  DIKLMTDNSVVIRDNGRGIPVDMHASANMPALEVVMTKLHAGGKFDNKTYRVSGGLHGVG 120

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALSS L++ + RE   Y   +  G    PL + G     TGT++ F P   IF  
Sbjct: 121 VSVVNALSSHLEVEVYREKKTYYQRYERGESKTPLEIRGETA-RTGTKIHFSPDPLIFET 179

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             F+++TL  R+RELSFL   ++I ++D+R+ + +   
Sbjct: 180 IIFDFETLAKRMRELSFLTKGLRIKILDERTGKKKTFC 217


>gi|291192910|gb|ADD83430.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 374

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 224/377 (59%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPTLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|321251923|ref|XP_003192225.1| DNA topoisomerase II [Cryptococcus gattii WM276]
 gi|317458693|gb|ADV20438.1| DNA topoisomerase II, putative [Cryptococcus gattii WM276]
          Length = 1377

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 146/675 (21%), Positives = 256/675 (37%), Gaps = 63/675 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S+   +  Y     Q L   + V KRP  YIG  +  +                      
Sbjct: 103 SNKNASEVY-----QKLSQREHVLKRPDTYIGSVEAITQPMWVLNPETKTMMHRPITFVP 157

Query: 40  GLHHMIYEVLDNAIDESLEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           G   +  E+L NA D  +     D I V ++ +  + +V +NGRGIP ++H +EG+   E
Sbjct: 158 GFLKIFDEILVNASDNKINDPTMDSIKVVIDREKNTVSVYNNGRGIPVEMHTKEGVMIPE 217

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL 155
           +I   L AG  F+    K++GG +G G  + N  S    +    K     Y+  F N + 
Sbjct: 218 LIFGHLLAGSNFDDDQKKLTGGRNGYGAKLANIYSHEFVVETADKVNSKKYKQIFSNNMS 277

Query: 156 DNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLI 211
              +         +  T++TF P  + F +   + DT   L  R+ +++     V++ L 
Sbjct: 278 KKGIPKITDNKKGEEWTKITFKPDLERFGMDGIDDDTNALLMKRVYDMAGTVKDVKVFLN 337

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+R                +  +  +      +  P  I     N   ++A   +DG  +
Sbjct: 338 DERIKVKNFKQYVEMYLNASTTAASEAAGGAAVTKPP-IIYEVANRRWEVAFALSDGEFK 396

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  FTN+I    GGTH+  + + L  ++   ++K   +   K        +      ++
Sbjct: 397 QV-SFTNSIATTKGGTHVDMIATQLANKLMDQIKKKNKAAPVK----PFQIKNHMWIFVN 451

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             + +P F SQTKE L         +  +++     + +       I+  VL+ +  +  
Sbjct: 452 ALIENPAFDSQTKENLTLKSSAFGSKCELSEEFIKKVAKTG-----IIDNVLNWARFKQD 506

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRE 446
               +    ++  +          +   R+ K   L L EGDSA      G A  GR   
Sbjct: 507 QILKKTDGTKRSRISGIVKLEDANNAGGRNSKNCTLILTEGDSAKALAVSGLAVVGRDE- 565

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
              + PLRGK+LNV  A  D+++ + EI  +   LG    QD   ++ LRY  ++IMTD 
Sbjct: 566 -YGVFPLRGKLLNVREAGHDQIVKNVEIQHIKQILGLKHNQDYASVDSLRYGHLMIMTDQ 624

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           D DG+HI+ L++ F     PSL+      +    P+  + +GK           E++   
Sbjct: 625 DHDGSHIKGLIINFLDHFYPSLLRIPNFLVEFITPIVKVWKGKKEISFYTMPQYEEWKAQ 684

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
                      + +G  SK         +    K   D   +       Q     + +  
Sbjct: 685 N---------NNGRGWESKYYKGLGTSTSADAKKYFGDLDKHRLAFETMQPEDRQLIDMA 735

Query: 626 SDQEINVSLASKLAN 640
            +++        L  
Sbjct: 736 FNKKKADDRKEWLRQ 750


>gi|238477948|gb|ACR43667.1| DNA gyrase subunit B [Aeromonas enteropelogenes]
          Length = 374

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 226/377 (59%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|308810347|ref|XP_003082482.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
 gi|116060951|emb|CAL56339.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
          Length = 1099

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 143/692 (20%), Positives = 252/692 (36%), Gaps = 72/692 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGD----------------------TDGESGLHHMIYEVLDNA 52
            Q    L+ +  RP  Y+G                            GL+ +  E+L NA
Sbjct: 56  YQKKTQLEHILLRPDTYVGSCERAEEKAWVYDDATKSLVHRQVSFVPGLYKIFDEILVNA 115

Query: 53  IDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D  +       + V ++++ G   V ++G GIP ++HKEEG+   E+I   L     ++
Sbjct: 116 TDNKVRDPKMKELRVDIDVEQGIIRVYNDGNGIPVEMHKEEGVYVPELIFGHLLTSSNYD 175

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-LDNPLVVTGSAG 166
               KV GG +G G  + N  S+   +    +G     Y   F N + +    VVT    
Sbjct: 176 DNEKKVVGGRNGYGAKLANIFSTEFIIETC-DGSREKRYRQVFNNNMSVKGEPVVTKCKK 234

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           ++  T VTF P    F ++    +       +        +  +  I L  ++       
Sbjct: 235 SENWTCVTFKPDFAKFGMESLVNEDVAALMCKRVYDAAGNIGKNTSIYLNGEKLA----- 289

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                 G   +VS     +         +   R  + +      +D        F N I 
Sbjct: 290 ----IKGFNDYVSMYLNSQATA-PKIFDLSTDRWQVCV----SISDSQQFQQCSFVNGIC 340

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   +++++   ++K    +K  +++     +      ++  + +P F S
Sbjct: 341 TMKGGTHVNNVADQISQKLLEKIQK---KEKTCKNLKAFQVKNHLWVFVNALIENPAFDS 397

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE L++   +       +D +   L +       +V+ ++  +  + +    +    +
Sbjct: 398 QTKETLITRPNKFGSSYSPSDSIIKKLMDSG-----VVENIMSWAQFKQSKELKKTDGAK 452

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
           +  L          D   R+ +   L L EGDSA   A  G S   R+   + PLRGK+L
Sbjct: 453 RSRLTGIPKLDDANDAGGRNSESCTLILTEGDSAKALAVSGLSVVGRDKYGVFPLRGKLL 512

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A  D++ ++ EI  +   LG   G++      LRY K++IMTD D DG+HI+ LL+
Sbjct: 513 NVRDASHDQIKNNAEINNIKQILGLQHGKEYDSAKSLRYGKLMIMTDQDHDGSHIKGLLI 572

Query: 519 TFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            F     PSL+   GFL     P+   T+GK  +        E +               
Sbjct: 573 NFLHAHFPSLLKIPGFLLEFITPIIKATKGKQSKVFYTLPEYETWKEANQ---------G 623

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ---EINVSL 634
           S G   K         A +  +       +      E      + +    +   E   + 
Sbjct: 624 SAGWSIKYYKGLGTSTANEAKEYFASLDHHRKNFIWESDGDGDLIDMSFSKKRVEDRKAW 683

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
            +                +   IN   IL  R
Sbjct: 684 LNAYEPGTFLDMSGEAIRYDEFINKELILFSR 715


>gi|19909713|dbj|BAB87052.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 310

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 150/311 (48%), Positives = 203/311 (65%), Gaps = 24/311 (7%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGI 93
            +GLHH+++EVLDN+IDE+L GY   I VT++ D S ++ DNGRGIP     D   E   
Sbjct: 1   GTGLHHLVFEVLDNSIDEALAGYCTEIQVTIHSDNSISIIDNGRGIPPLVKFDDKHEPKR 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAE+ MT LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G ++ + F  G
Sbjct: 61  SAAEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFARG 120

Query: 154 IL-----------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
            +                  +P+ V G A +  GTEV FL   +IF+  +F+Y+ L  R+
Sbjct: 121 DVQNRLVETVTGPDGEPVEVSPMKVIG-ATDKRGTEVHFLADEEIFTNVEFHYEILSKRI 179

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLN+ V I L+D+R+ +       + GG++ FV Y++R K  L  +       +D 
Sbjct: 180 RELSFLNNGVHIKLVDQRTGKE--EDFAFSGGVKGFVEYINRSKSVLHPNIFYANTEKDG 237

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  
Sbjct: 238 IGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKAKVE 297

Query: 317 VIGDDCREGFT 327
             GDD REG  
Sbjct: 298 TTGDDMREGLA 308


>gi|110612697|gb|ABG78311.1| GyrB [uncultured bacterium]
          Length = 399

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 179/404 (44%), Positives = 267/404 (66%), Gaps = 7/404 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  +YKVSGGLHGV VSVVNALS  L L I + G  ++ ++  G  + PL + G + 
Sbjct: 1   GKFDNNTYKVSGGLHGVWVSVVNALSETLLLEIDQMGKHFKQTYHKGEPEAPLSIAGDS- 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           + TGT + F P   I    +F++D L HR REL +LN ++ I L ++ +   RE     +
Sbjct: 60  DKTGTTIWFYPDMSIMETDEFSFDVLAHRFRELGYLNPALTIVLTEEET--LRETVFHDE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDG 285
           GGI +F+ +L+ +K+ + ++    +   +    +++ ++ D    E +L + NNIP ++G
Sbjct: 118 GGIRSFLVFLNENKRTIHETLFFRKTFENGSIFEVSFQYQDTTDAETLLSYVNNIPTREG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G+H+ G RSALTR +  ++     +K ++    G+D REG ++++SIK+P+P+F  QTK 
Sbjct: 178 GSHVKGFRSALTRVVNRFIRDKNLNKGEEVR--GEDIREGLSAIISIKIPNPQFEGQTKA 235

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL SS V   +ESF+ + L    E+    A+ I  K + ++  R+AAR+AR+LT+RK VL
Sbjct: 236 KLGSSWVAGAMESFLAESLEDAFEKQGAVARAIADKAILSAQAREAARKARELTKRKNVL 295

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR- 464
           + ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ + 
Sbjct: 296 EGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKTKG 355

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            +K ++  E+  LITA+G G+G++ F +  LRYHKIIIMTDADV
Sbjct: 356 IEKFITHDEVRALITAVGCGLGEEDFSLKNLRYHKIIIMTDADV 399


>gi|119584763|gb|EAW64359.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_c [Homo sapiens]
          Length = 1626

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 55  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 114

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 115 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 174

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 175 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 234

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 235 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKK---------LPV 285

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 286 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 344

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 345 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 401

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 402 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 457

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 458 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 515

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 516 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 575

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 576 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 635

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 636 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 687

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 688 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 739

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 740 VDGFKPGQRKVLFTCFKRNDKREVK 764


>gi|328349769|emb|CBY89192.1| GyrB protein [Flavobacterium sp. R-36976]
          Length = 398

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 175/394 (44%), Positives = 254/394 (64%), Gaps = 7/394 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPL 159
           T++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G +YE  +  G    P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKALYPV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS--- 215
              G      GT VTF P   IF+   +++YDTL  R+RELS+LN  + ++  DKR    
Sbjct: 61  KQIGETT-KRGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSYLNKGITVTFTDKRELDK 119

Query: 216 -PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                        G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+ 
Sbjct: 120 DGNFVSEIFHSDDGLKEYIRYLDGNREPIIAHVISMDHEKGEIPVEVALIYNTSYTENIF 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+
Sbjct: 180 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA++
Sbjct: 240 QEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAKK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPLR
Sbjct: 300 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           GKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 360 GKILNVEKAMHHKVFENEEIRNIFTALGVTVGTE 393


>gi|297287019|ref|XP_001092092.2| PREDICTED: DNA topoisomerase 2-beta [Macaca mulatta]
          Length = 1621

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 50  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 109

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 110 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 169

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 170 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 229

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 230 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 280

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 281 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 339

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 340 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 396

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 397 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 452

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 453 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 510

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 511 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 570

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 571 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 631 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 682

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 683 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 734

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 735 VDGFKPGQRKVLFTCFKRNDKREVK 759


>gi|18147153|dbj|BAB83057.1| DNA gyrase subunit B [Alcanivorax sp. Mho1]
          Length = 380

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 228/383 (59%), Positives = 292/383 (76%), Gaps = 4/383 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL I+R G ++E  + +G+ D PL V G+  + +GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLDVVGNT-DSSGTSIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ FS   F+YD L  RLRELSFLNS V+I L D+RS E       Y+GG+ AFVS+
Sbjct: 60  RPSAETFSNIKFHYDILAKRLRELSFLNSGVRIHLKDERSGEE--EVFEYEGGLSAFVSF 117

Query: 236 LDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+ +K PL Q          D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL+G R 
Sbjct: 118 LNENKTPLNQVFHFQYDREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRG 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+ 
Sbjct: 178 ALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKG 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  + +    +L E+P EAK I +K++DA+  RDAAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 AVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKAREMTRRKGALDIAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRY 497
           GTLITALG GIG+D +++ KLRY
Sbjct: 358 GTLITALGCGIGRDEYNVEKLRY 380


>gi|238477932|gb|ACR43659.1| DNA gyrase subunit B [Aeromonas jandaei]
 gi|269849463|gb|ACZ49800.1| DNA gyrase subunit B [Aeromonas jandaei]
          Length = 374

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 226/377 (59%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+EK   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMEKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|148611302|gb|ABQ95839.1| DNA gyrase subunit B [Acidiphilium sp. XTS1]
          Length = 400

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 237/402 (58%), Positives = 297/402 (73%), Gaps = 9/402 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVG +VVNALS W+++RI R+G  + + F NG    PL V G + + T
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGPSDHAT 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT VTF PS+  F+  +F++   + RLREL+FLNS + I L D+R    +E    Y+GG+
Sbjct: 61  GTSVTFRPSAATFTRTEFDFAIYERRLRELAFLNSGLTIDLRDERHSAVQEAHFRYEGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
             FVS+LDR K  L  SPI      ++  I ++ A+ WND YHE +LCFTNNI Q+DGGT
Sbjct: 121 VEFVSWLDRAKTQLFSSPIAAFKDDTQGGIKVEFALAWNDTYHETMLCFTNNIVQRDGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G RSALTR ++ Y E          S+ G+D REG T+VLS+K+PDP+FSSQTK+KL
Sbjct: 181 HLAGFRSALTRVVSKYAESLGKKDS--LSLSGEDMREGLTAVLSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+ +V++ V D L  W E HP E K+I +KV+DA+  R+AARRAR+LTRRKGVLDI
Sbjct: 239 VSSEVQPLVQAAVADALEHWFETHPKEGKLIAQKVMDAASAREAARRARELTRRKGVLDI 298

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLADC ERDP KSE+F+VEG SAGGSAKQGR R+ QAILPL+GKILNVERARFD+
Sbjct: 299 STLPGKLADCQERDPAKSEIFIVEGGSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 358

Query: 468 MLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMT 504
           ML S EIGTLITALGTGIG     Q  FDI+KLRYH+I+IMT
Sbjct: 359 MLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|1066004|dbj|BAA07236.1| typr II DNA topoisomerase beta isoform [Mus musculus]
          Length = 1612

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 43  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 102

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 103 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 162

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 163 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 222

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 223 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 273

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 274 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 332

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 333 RHVDYVVDQVVSKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 389

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 390 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 445

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 446 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 503

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 504 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 563

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 564 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 623

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 624 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 675

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 676 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 727

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 728 VDGFKPGQRKVLFTCFKRNDKREVK 752


>gi|20141946|sp|Q02880|TOP2B_HUMAN RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
          Length = 1626

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 55  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 114

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 115 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 174

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 175 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 234

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 235 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKK---------LPV 285

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 286 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 344

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 345 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 401

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 402 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 457

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 458 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 515

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 516 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 575

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 576 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 635

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 636 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 687

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 688 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 739

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 740 VDGFKPGQRKVLFTCFKRNDKREVK 764


>gi|4996788|dbj|BAA78439.1| subunit B protein of DNA gyrase [bacterium rJ16]
          Length = 323

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 157/327 (48%), Positives = 211/327 (64%), Gaps = 32/327 (9%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLH 88
           DT   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V+DNGRGIPT     D H
Sbjct: 1   DTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVTDNGRGIPTGVKMDDKH 60

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
            E   SA+E+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALSS L+L ++REG ++ +
Sbjct: 61  -EPKRSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSMLRLTVRREGKVHVL 119

Query: 149 SFINGILD------------NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHR 195
            F  G +             +P+ V G   +  GTEV FLP ++IF    DF+Y+ L  R
Sbjct: 120 EFSRGFVQNRILETVDGVEISPMQVLGDT-DKRGTEVHFLPDTEIFKENSDFHYEILAKR 178

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLN+ V+I L D+RS +         GG+  FV ++++ K  L  +     G R 
Sbjct: 179 LRELSFLNNGVRIRLKDERSGKE--DDFSGAGGVRGFVEFINKGKTVLHPNSFYASGERP 236

Query: 256 ----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                     +I +++AM+WN GY E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y++
Sbjct: 237 AETYGGIAGTHIGVEVAMQWNSGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYID 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSI 332
           ++  +KK K  V GDD REG   VLS+
Sbjct: 297 ENDFAKKAKVEVTGDDMREGLCCVLSV 323


>gi|313747322|dbj|BAJ41208.1| DNA gyrase subunit B [Virgibacillus halophilus]
 gi|313747324|dbj|BAJ41209.1| DNA gyrase subunit B [Virgibacillus halophilus]
          Length = 389

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 207/393 (52%), Positives = 280/393 (71%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALSS L++ + R+G I+ + F  G+  N + V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSSNLEVYVHRDGKIHFLGFERGVPQNEIKVIGET-DITG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+  F P  DIF+    F+ DTL  R+REL+FLN  ++I+  DKRS +  E    Y+GGI
Sbjct: 60  TKTHFKPDPDIFTETTVFDDDTLSQRIRELAFLNKGIRITFEDKRSGKEPEE-FHYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             +V+Y++R+K+ L   P   +G+ + I++D+A+++NDG+  N+  F NNI   +GGTH 
Sbjct: 119 SEYVAYINRNKEVLH-EPFFAEGNAEGITVDVAVQYNDGFTSNIYSFANNIHTYEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  KS   K +  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 178 SGFKTALTRVINDYARKSNLLKDNDTNLSGDDVREGITAIVSIKHPDPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR++ ++  ++  S +L E+P   +IIV K L AS  R AA++ARDLTRRK  L+++S
Sbjct: 238 SEVRTITDALFSEAFSKFLFENPTVGRIIVDKGLMASRARAAAKKARDLTRRKSALEVSS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS R+ + SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 298 LPGKLADCSSRNAEISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI T+ITALGTGIG++ FDI+K RYHKI+I
Sbjct: 358 SNNEIRTIITALGTGIGEE-FDISKARYHKIVI 389


>gi|291192912|gb|ADD83431.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 375

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 226/378 (59%), Positives = 286/378 (75%), Gaps = 3/378 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINK 494
           LITALG GIG D ++ +K
Sbjct: 358 LITALGCGIGHDEYNPDK 375


>gi|224045386|ref|XP_002197470.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Taeniopygia guttata]
          Length = 1622

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 141/743 (18%), Positives = 271/743 (36%), Gaps = 73/743 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 55  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 114

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I ++++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 115 DNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 174

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            D 
Sbjct: 175 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPKIKHFEGDD 234

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++ L  K+            
Sbjct: 235 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMLNGKK---------LPV 285

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 286 NGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGFQQI-SFVNSIATTKGG 344

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 345 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFVNCLIENPSFDSQTKEN 401

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 402 M-TLQPKSFGSKCQLSEKFFKAASNCGIIESILNWVKFKAQ---TQLNKKCSSVKHSKIK 457

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +      L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 458 GIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 515

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 516 EASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLI 575

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 576 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENHKAWKIKYYK 635

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 636 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 687

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI---FS 694
                NF+ ++ ++  HG      +            F+ +   +FS     + I     
Sbjct: 688 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPSLVD 741

Query: 695 NRIEENYLTILSLICNGDKIKIT 717
                    + +     DK ++ 
Sbjct: 742 GLKPGQRKVLFTCFKRNDKREVK 764


>gi|19913408|ref|NP_001059.2| DNA topoisomerase 2-beta [Homo sapiens]
 gi|119584761|gb|EAW64357.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_a [Homo sapiens]
 gi|162317664|gb|AAI56331.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
 gi|162318196|gb|AAI57119.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
          Length = 1621

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 50  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 109

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 110 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 169

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 170 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 229

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 230 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKK---------LPV 280

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 281 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 339

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 340 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 396

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 397 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 452

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 453 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 510

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 511 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 570

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 571 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 631 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 682

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 683 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 734

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 735 VDGFKPGQRKVLFTCFKRNDKREVK 759


>gi|37231|emb|CAA48197.1| DNA topoisomerase II [Homo sapiens]
          Length = 1621

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 50  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 109

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 110 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 169

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 170 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 229

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 230 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKK---------LPV 280

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 281 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 339

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 340 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 396

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 397 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 452

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 453 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 510

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 511 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 570

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 571 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 631 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 682

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 683 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 734

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 735 VDGFKPGQRKVLFTCFKRNDKREVK 759


>gi|3869382|gb|AAC77432.1| DNA topoisomerase II beta [Homo sapiens]
          Length = 1598

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 27  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 86

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 87  DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 146

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 147 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 206

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 207 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKK---------LPV 257

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 258 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 316

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 317 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 373

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 374 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 429

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 430 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 487

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 488 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 547

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 548 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 607

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 608 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 659

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 660 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 711

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 712 VDGFKPGQRKVLFTCFKRNDKREVK 736


>gi|34328148|ref|NP_033435.2| DNA topoisomerase 2-beta [Mus musculus]
 gi|76363529|sp|Q64511|TOP2B_MOUSE RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
 gi|32451610|gb|AAH54541.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|54887373|gb|AAH41106.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|148688695|gb|EDL20642.1| topoisomerase (DNA) II beta [Mus musculus]
          Length = 1612

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 43  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 102

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 103 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 162

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 163 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 222

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 223 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 273

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 274 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 332

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 333 RHVDYVVDQVVSKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 389

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 390 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 445

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 446 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 503

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 504 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 563

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 564 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 623

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 624 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 675

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 676 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 727

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 728 VDGFKPGQRKVLFTCFKRNDKREVK 752


>gi|161085578|dbj|BAF93876.1| DNA gyrase B [Bacillus sp. YM6-008]
          Length = 390

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 190/393 (48%), Positives = 263/393 (66%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS    +++ REG+I+E+ F  G     L V G   +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSIETIVQVHREGHIHEIKFERGKTVQELTVIGDTDH-NG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F    +IF     + YD L HR+REL++LN  ++I++ D+R  E R  T  Y+GGI
Sbjct: 60  TTTRFKADPEIFKETTVYEYDILAHRIRELAYLNRGIKITIADEREEEMRSTTYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L++ K P+      + G +D I++++AM++N G+  N+  F NNI   +GGTH 
Sbjct: 120 RSYVEHLNQSKDPIHDPID-VLGEKDGITVEIAMQYNAGFSSNIFSFANNINTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  KS   K+   ++ G+D REG T+++S+K PDP+F  QTK KL +
Sbjct: 179 SGFKTALTRVINDYARKSGLLKESDANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +  S  +DG   ++ E+P  A+ IV+K L A+  R AA++AR+ TRRK  L+++S
Sbjct: 239 SEVSQITNSLFSDGFERFMLENPTVARKIVEKGLMAARARVAAKKAREFTRRKNALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS  +P   E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 299 LPGKLADCSSTNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITA GTGIG++ F++ K RYHKIII
Sbjct: 359 SNAEIRAMITAFGTGIGEE-FNLEKARYHKIII 390


>gi|302030076|gb|ADK91573.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 374

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 225/377 (59%), Positives = 286/377 (75%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLRDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|281341246|gb|EFB16830.1| hypothetical protein PANDA_016140 [Ailuropoda melanoleuca]
          Length = 1599

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 32  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 91

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 92  DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 151

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 152 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 211

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 212 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 262

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 263 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 321

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 322 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 378

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 379 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 434

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 435 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 492

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 493 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 552

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 553 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 612

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 613 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 664

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 665 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 716

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 717 VDGFKPGQRKVLFTCFKRNDKREVK 741


>gi|296228227|ref|XP_002759705.1| PREDICTED: DNA topoisomerase 2-beta-like [Callithrix jacchus]
          Length = 1620

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 50  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 109

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 110 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 169

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 170 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 229

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 230 YTCITFQPDLSKFKMEKLDKDIVALMTKRAYDLAGSCKGVKVMFNGKK---------LPV 280

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 281 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 339

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 340 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 396

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 397 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 452

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 453 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 510

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 511 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 570

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 571 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 631 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 682

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 683 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 734

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 735 VDGFKPGQRKVLFTCFKRNDKREVK 759


>gi|269849461|gb|ACZ49799.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192922|gb|ADD83436.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192930|gb|ADD83440.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 374

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 225/377 (59%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|332816287|ref|XP_516332.3| PREDICTED: DNA topoisomerase 2-beta [Pan troglodytes]
          Length = 1621

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 50  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 109

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 110 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 169

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 170 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 229

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 230 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKK---------LPV 280

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 281 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 339

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 340 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 396

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 397 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 452

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 453 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 510

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 511 EASHKQIMENAEINNIIKIVGLQYKKSYDDAKSLKTLRYGKIMIMTDQDQDGSHIKGLLI 570

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 571 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 631 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 682

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 683 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 734

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 735 VDGFKPGQRKVLFTCFKRNDKREVK 759


>gi|332215374|ref|XP_003256818.1| PREDICTED: DNA topoisomerase 2-beta-like [Nomascus leucogenys]
          Length = 1621

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 50  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 109

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 110 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 169

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 170 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 229

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 230 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKK---------LPV 280

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 281 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 339

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 340 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWIFINCLIENPTFDSQTKEN 396

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 397 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 452

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 453 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 510

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 511 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 570

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 571 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 631 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 682

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 683 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 734

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 735 VDGFKPGQRKVLFTCFKRNDKREVK 759


>gi|7388329|sp|Q9Y8G8|TOP2_PENCH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|5441259|dbj|BAA82356.1| type II DNA topoisomerase [Aspergillus terreus]
          Length = 1587

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 140/662 (21%), Positives = 253/662 (38%), Gaps = 46/662 (6%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S+N    +  ++  Q L  L+ + KRP  Y+G T+  +                      
Sbjct: 55  SNNQDKDTNVSEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVP 114

Query: 40  GLHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E++ NA D        D I VT++ + G  +V +NGRGIP ++H +E +   E
Sbjct: 115 GLYKIFDEIVVNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSKEKMYVPE 174

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGIL 155
           +I   L     ++    KV+GG +G G  + N  S+   +  +  R+   Y+ ++   + 
Sbjct: 175 LIFGHLLTSSNYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTENMT 234

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
                    A     T+VTF P    F +   + D      R +  L  + ++++    S
Sbjct: 235 KMGKAKITDAKGADYTKVTFKPDYAKFGMTGMDDDFEALVKRRVYDLAGTAKVAVKLNGS 294

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
             P      Y       +        P  ++   I     +   ++    +DG  + V  
Sbjct: 295 RIPIRNFKMYMEMYTKAIRRERGDMGPAGKNE--IITCSPDPRWEVGFAVSDGAFQQV-S 351

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F N+I    GGTH++ +   +  ++   V+K   +     ++     R      ++  + 
Sbjct: 352 FVNSIAITSGGTHVNYIADQICSKLAEQVKKKNKNG---ATLKPAQIRNHIFIFVNALIV 408

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P F+SQTKE+L + + +   +  + +     + +  +   I+      A  +       
Sbjct: 409 NPAFTSQTKEQLTTKQSQFGSKCVLEEDFYKKILKTEVMTNILHFAQQKADQMLKKTDGG 468

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILP 452
           R        L  A+  G       ++     L L EGDSA G A  GR+    +   + P
Sbjct: 469 RRSRMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFP 522

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGK+LNV  A FD++  +QEI  +   +G    ++  D   LRY  ++I TD D DG+H
Sbjct: 523 LRGKLLNVRDASFDQIAKNQEIQNIKNFIGLQHKKEYTDTRGLRYGHLMITTDQDHDGSH 582

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           I+ LL+ F   Q PSL+      I    P+  + +G      K+      +         
Sbjct: 583 IKGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGD----PKNPTKQRSFFTMPEYEAW 638

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
            E     +G   K                 +D   +  +    Q     +      ++  
Sbjct: 639 KEEHGHERGWEHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQDNEVELIELAFSKKKA 698

Query: 632 VS 633
             
Sbjct: 699 DE 700


>gi|240952142|ref|XP_002399322.1| DNA topoisomerase II, putative [Ixodes scapularis]
 gi|215490528|gb|EEC00171.1| DNA topoisomerase II, putative [Ixodes scapularis]
          Length = 1582

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 142/712 (19%), Positives = 269/712 (37%), Gaps = 67/712 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDT----------DGES-------------GLHHMIYEVLDN 51
            Q    L+ +  RP  YIG            DGE              GL+ +  E+L N
Sbjct: 36  YQKKSQLEHILLRPDTYIGSVEPISQTMWVYDGEENGGMKNRSVTYVPGLYKIFDEILVN 95

Query: 52  AIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D        D I + ++ D    ++ +NGRGIP   HK E +    +I   L     +
Sbjct: 96  AADNKQRDKNMDCIKIEIDPDANRISIWNNGRGIPVVEHKVEKMFVPTLIFGHLLTSSNY 155

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-R-EGNIYEMSFINGILD-NPLVVTGSAG 166
           N +  KV+GG +G G  + N  S+   +    R E  +++  + + +       +     
Sbjct: 156 NDEEKKVTGGRNGYGAKLCNIFSTKFIVETYSRSEKRLFKQVWEDNMKKTTEPKIRTEPK 215

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREITM 223
            +  T +TF P    FS++  + DT+     R  +++     V++ L  KR         
Sbjct: 216 GEDFTRITFHPDLSKFSMEKLDADTVALLSRRAYDVAGCTRGVKVYLNGKR--------- 266

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
               G + +V    + K+    +P+ +     +   ++A+  ++      + F N+I   
Sbjct: 267 LPVKGFKDYVGLFLKDKEDEAGNPLTVVYESPSDRWEVAVTLSEAGEFRQMSFVNSIATT 326

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG+H+  +   LT+++   V+K   +    ++      ++     ++  + +P F SQT
Sbjct: 327 KGGSHVDYIAEQLTKKVLENVKKKNKAGVKIQNKQ---IKDHVWVFVNCLIENPTFDSQT 383

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE +     +   +  ++D     + +  +   ++      A         A+    +  
Sbjct: 384 KENMTLQAKKFGSKCELSDKFYNQVLKCGVVEAVMSWLTFKAQKQLGMKCSAK----KHS 439

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKIL 458
            L          D   R+     L L EGDSA      G A  GR +    + PL+GK+L
Sbjct: 440 KLKGIPKLEDANDAGTRNSVDCTLILTEGDSAKSLAVSGLAVVGRDK--YGVFPLKGKML 497

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRT 515
           NV  A   ++L + EI  +I  +G    +    +     LRY +++IMTD D DG+HI+ 
Sbjct: 498 NVREASHKQILENAEINNVIKIMGLQYKKKYESVEDLKALRYGRLMIMTDQDQDGSHIKG 557

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI-NQSLSEEIEL 574
           L++ F     PSL+   FL     P+   ++GK+          E++             
Sbjct: 558 LVINFIHHNWPSLLKLPFLEEFITPIVKASKGKNEISFYSLPEFEEWKTATDDWQRWKVK 617

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  +  + + +  D   +   IK  Y   +     +   S     +    +   +
Sbjct: 618 YYKGLGTSTGKEAKEYFSDM--LRHRIKFKYQGGEDDRAIELAFSKKLADQRKDWLRGGM 675

Query: 635 ASKLANRLNFIAEKS-------EKSWHGSINNSDILVKRIARGVQEQFVLEG 679
             +   R   + E           ++   +N   IL   +        +++G
Sbjct: 676 EERKQRRELGLPEIYLYGKETKNITYEDFVNKELILFSNMDNERSIPSLVDG 727


>gi|3024753|sp|Q64399|TOP2B_CRILO RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
 gi|2137065|pir||S59969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) isoform beta -
           Chinese hamster
 gi|790988|emb|CAA60173.1| DNA topoisomerase (ATP-hydrolysing) [Cricetulus longicaudatus]
          Length = 1612

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 43  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 102

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 103 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 162

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 163 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 222

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 223 YTCITFQPDLAKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 273

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 274 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 332

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 333 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 389

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 390 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 445

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 446 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 503

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 504 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 563

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 564 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 623

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 624 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 675

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 676 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 727

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 728 VDGFKPGQRKVLFTCFKRNDKREVK 752


>gi|292494329|dbj|BAI94507.1| DNA gyrase subunit B [Pseudomonas indoloxydans]
          Length = 384

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 220/385 (57%), Positives = 295/385 (76%), Gaps = 4/385 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ 
Sbjct: 3   QVSGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIH 61

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS + F+   F++D L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV 
Sbjct: 62  FKPSEETFANIHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVE 119

Query: 235 YLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           YL+ +K  + Q     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G R
Sbjct: 120 YLNTNKTVVNQVFHFSVQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFR 179

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 180 SALTRHLNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 239

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGK
Sbjct: 240 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 299

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+SSQE
Sbjct: 300 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVERARFDRMISSQE 359

Query: 474 IGTLITALGTGIGQDSFDINKLRYH 498
           +GTLITALG GIG+D ++I+KLRYH
Sbjct: 360 VGTLITALGCGIGRDEYNIDKLRYH 384


>gi|18369816|dbj|BAB84103.1| DNA topoisomerase II [Penicillium chrysogenum]
          Length = 1423

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 149/704 (21%), Positives = 268/704 (38%), Gaps = 55/704 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           ++  Q L  L+ + KRP  YIG T+  +                      GL+ +  E++
Sbjct: 7   SEKYQKLTQLEHIIKRPDTYIGSTERTTQQMWVYNSGTELMEFRDVSFVPGLYKIFDEIV 66

Query: 50  DNAIDESLEGYAD----IITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
            NA D     + D     I +T++ + G  +V +NGRGIP ++H +E I   E+I   L 
Sbjct: 67  VNAAD---NKHNDSSMNEIRITIDREAGEISVWNNGRGIPIEIHSKEKIYVPELIFGHLL 123

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVT 162
               ++    KV+GG +G G  + N  S+   L  +  R+   Y+ ++   +        
Sbjct: 124 TSSNYDDSQQKVTGGRNGFGAKLCNVFSTEFTLETQDSRQKKKYKQTWTENMTKMGKAKI 183

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             A  D  T+VTF P    F ++  + D      R +  L  +  +++    +  P    
Sbjct: 184 TDAKGDDYTKVTFKPDFAKFGMEGIDDDFESLVKRRVYDLAGTAGVAVKLNNTRVPIRSF 243

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y       +        P  +    I     +   ++    +DG  + V  F N+I  
Sbjct: 244 RKYMEMYTKAIRKERGDDGPPTKDE--IITCSPDPRWEIGFAVSDGSFQQV-SFVNSIAT 300

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++ +   +  ++   V+K   S     ++     R      +   + +P F+SQ
Sbjct: 301 TSGGTHVNYIADQICTRLADQVKKKNKSG---ATLKSAQIRNHIFIFVKALIVNPAFTSQ 357

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE+L +   +   +  +++     + +  + + I+      A          R      
Sbjct: 358 TKEQLTTKASQFGSKCPLDEDFYKKVLKTEVMSNILHFAEQKADPDLKKGDTGRRTRMNN 417

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             L  A+  G       R+ +   L L EG+SA G A  GR+    +   + PLRGK+LN
Sbjct: 418 PKLVDANKAG------TREGRHCTLILTEGESAKGLAMAGRAVVGPDLFGVFPLRGKLLN 471

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A FD++  + EI ++   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ 
Sbjct: 472 VRDASFDQISKNVEIQSIKNFIGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLIN 531

Query: 520 FFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           F   Q PSL+      I    P+  + +G      K+    + +       E  E     
Sbjct: 532 FLQAQFPSLLKIPEFLIEFITPIIKVWKGD----PKNPTKQKSFFTMPEHDEWREAHQHE 587

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN---VSLA 635
           +G   K                 +D   +  +    Q   +G+      ++         
Sbjct: 588 RGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDGEAGLIELAFSKKKADERKEWL 647

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
            +           ++ ++   IN   IL            V++G
Sbjct: 648 RQFKPGTFLDHSGAKITYTDFINKELILFSMADNQRSIPSVVDG 691


>gi|19909709|dbj|BAB87050.1| DNA gyrase subunit B [Ralstonia sp. E2]
          Length = 310

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 152/313 (48%), Positives = 204/313 (65%), Gaps = 24/313 (7%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGI 93
            +GLHH+++EVLDN+IDE+L GY   I VT++ D S ++ DNGRGIP     D   E   
Sbjct: 1   GTGLHHLVFEVLDNSIDEALAGYCTEIQVTIHTDNSISIVDNGRGIPPDVKFDDKHEPKR 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAE+ MT LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G ++ + F  G
Sbjct: 61  SAAEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGKVHLLEFAQG 120

Query: 154 -----------------ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
                            +  +P+ VTG A +  GTEV FL    IF+  +F+Y+ L  R+
Sbjct: 121 AVQNRLVESATGTDGQPVEVSPMKVTG-ATDKRGTEVHFLADEAIFTNVEFHYEVLSKRI 179

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLN+ V I L D+R+ +       + GG++ FV Y++R K  L  +       +D 
Sbjct: 180 RELSFLNNGVHIRLTDQRTGKE--EDFAFSGGVKGFVEYINRAKTTLHPTIFYANAEKDG 237

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I++++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  
Sbjct: 238 IAVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAKVE 297

Query: 317 VIGDDCREGFTSV 329
             GDD REG   V
Sbjct: 298 TTGDDMREGLACV 310


>gi|115500940|dbj|BAF34140.1| B subunit gyrase [Azomonas agilis]
          Length = 385

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 222/388 (57%), Positives = 290/388 (74%), Gaps = 3/388 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L L ++R+G ++E  + +G+   PL   G   + +GTE+ 
Sbjct: 1   KVSGGLHGVGVSVVNALSEELLLTVRRDGKVWEQLYQHGVPAAPLSAIGET-DTSGTEIR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS + F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV 
Sbjct: 60  FKPSPETFKNIHFSWDILAKRLRELSFLNSGVGILLRDERSGKE--ELFKYEGGLRAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K  + Q         D + +++A++WNDG++E++LCFTNNIPQ+DGGTHL+G RS
Sbjct: 118 YLNTNKTIVNQVFHFNVQRNDGVGVEVALQWNDGFNEHILCFTNNIPQRDGGTHLAGFRS 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E+   +KK K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 ALTRNLNTYLEQEGLAKKFKFQPTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +    + +L E P EAK +V K+LDA+  R+AAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 AVEQEMGKYFAEFLLERPAEAKAVVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIII 502
           GTLITALG GIG+D ++I KLR H I+I
Sbjct: 358 GTLITALGCGIGRDEYNIEKLRNHNIVI 385


>gi|19909715|dbj|BAB87053.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 310

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 149/313 (47%), Positives = 206/313 (65%), Gaps = 24/313 (7%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGI 93
            +GLHH+++EVLDN+IDE+L GY   I VT++ D S ++ DNGRGIP     D   E   
Sbjct: 1   GTGLHHLVFEVLDNSIDEALAGYCTEIQVTIHSDNSISIIDNGRGIPPLVKFDDKHEPKR 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAE+ MT LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G ++ + F  G
Sbjct: 61  SAAEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKG 120

Query: 154 IL-----------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
            +                  +P+ + G A +  GTEV FL   +IF+  +F+Y+ L  R+
Sbjct: 121 DVQNRIVETVTGPDGQPVEVSPMKIIG-ATDKRGTEVHFLADEEIFTNVEFHYEILSKRI 179

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLN+ V I L+D+R+ +       + GG++ FV Y++R K  L  +       +D 
Sbjct: 180 RELSFLNNGVHIKLVDQRTGKE--EDFAFSGGVKGFVEYINRSKSVLHPNIFYANTEKDG 237

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I++++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  ++E++  +KK K  
Sbjct: 238 IAVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKHIEENEVAKKAKVE 297

Query: 317 VIGDDCREGFTSV 329
             GDD REG + V
Sbjct: 298 TTGDDMREGLSCV 310


>gi|3786306|dbj|BAA33955.1| TopoisomeraseII [Candida glabrata]
          Length = 1406

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 158/718 (22%), Positives = 271/718 (37%), Gaps = 61/718 (8%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDT----------DGES---------- 39
           MS+    +  Y     Q +  L+ + KRP  YIG            D E+          
Sbjct: 1   MSEPKTASERY-----QKISQLEHILKRPDTYIGSVEIQEQEQWIYDEETDCMIDKTVNI 55

Query: 40  --GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
             GL  +  E+L NA D  +       I VT+N +     V ++G+GIP ++H++E I  
Sbjct: 56  VPGLFKIFDEILVNAADNKVRDPSMKRIDVTINPEENFIEVRNDGKGIPIEIHEKEKIYI 115

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+   L     + G  Y  ++ N 
Sbjct: 116 PELIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTLETADPKNGRKYVQTWENN 175

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+V F P    F ++  + D    ++ R+ +++     V + 
Sbjct: 176 MNVCHPPKITSYKKVPSYTKVAFKPDLSRFGMESLDSDILGVMRRRVYDINGSVRDVNVY 235

Query: 210 LIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           L  K             Y   +E      +        +   I   R +   ++A   +D
Sbjct: 236 LNGKPLKIRNFKNYVELYLKSLEKMRKMDNGESDTTPSNIPTILYERVSDRWEIAFAVSD 295

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + V  F N+I    GGTH++ +   + R+++         KK K+++     +    
Sbjct: 296 ISFKQV-SFVNSIATTTGGTHVNYIADQIVRKVSD------ILKKKKKNIKPYQIKNNMF 348

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +    +    + +    +  K+ + + 
Sbjct: 349 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCDISSDYINKIMKTDLATKIFEIAD 403

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
                   +    RK  +              +D  K  L L EGDSA      G A  G
Sbjct: 404 ENANNALKKSDGSRKSRITDYPKLEDANKAGTKDGYKCTLILTEGDSALSLAVAGLAVVG 463

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 464 RD--YYGCYPLRGKMLNVREATADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 521

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  +T  K ++ V    +L D
Sbjct: 522 MTDQDHDGSHIKGLIINFIETSFPGLLDIPGFLIEFITPIVKVTITKPIKKVISFFNLPD 581

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +   EE   +   +            +       L       H     ++ +I   
Sbjct: 582 Y--EKWREEESHKYSWKQKYYKGLGTSTSPEIIEYFSNLDTHLKKFHALQGDDKDLIDLA 639

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           F+ +   +       +           +E      IN   IL            VL+G
Sbjct: 640 FSKKKADDR-KEWLRQYEPGTVLDPTLNEIPISDFINKELILFSLADNVSSIPSVLDG 696


>gi|302659966|ref|XP_003021668.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
 gi|291185576|gb|EFE41050.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
          Length = 1680

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 141/685 (20%), Positives = 249/685 (36%), Gaps = 41/685 (5%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
            ++  Q +  L+ + KRP  YIG  +                         GL+ +  E+
Sbjct: 126 SSEKYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEI 185

Query: 49  LDNAIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D          I VTL+ + G  +V +NGRGIP ++HK+E     E+I   L   
Sbjct: 186 LVNAADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQTYIPELIFGHLLTS 245

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+   +     ++   +++++ N +          
Sbjct: 246 SNYNDMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITE 305

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              D  T+VTF P    F +   + D      R +  +  +   ++    +  P +    
Sbjct: 306 CKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKK 365

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y       +                I     +   ++    +DG  + V  F N+I    
Sbjct: 366 YMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTS 424

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++ +   +        +      K   ++     +      ++ ++ +P F+SQTK
Sbjct: 425 GGTHVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTK 481

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L +   +   +  V+D     + +  +   I+      A  +       R        
Sbjct: 482 EQLTTRPSQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPK 541

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVE 461
           L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV 
Sbjct: 542 LTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVR 595

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            A  D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ + 
Sbjct: 596 DASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYL 655

Query: 522 FRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
               P+L+   GFL     P+  + +G        +         +            K 
Sbjct: 656 QVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKK 715

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  D  +    L +     H     E  +I   F+ +   E       +   
Sbjct: 716 YYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKP 774

Query: 641 RLNFIAEKSEKSWHGSINNSDILVK 665
                    + ++   IN   IL  
Sbjct: 775 GTYLDHSTDQITYTDFINKELILFS 799


>gi|328550504|ref|NP_001127186.1| DNA topoisomerase 2-beta [Pongo abelii]
 gi|55725810|emb|CAH89685.1| hypothetical protein [Pongo abelii]
          Length = 1620

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 50  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 109

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 110 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 169

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 170 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 229

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 230 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKK---------LPV 280

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 281 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 339

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 340 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 396

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 397 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 452

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 453 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 510

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 511 EASHKQIMENAEINNIIKIVGQQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 570

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 571 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 631 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 682

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 683 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 734

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 735 VDGFKPGQRKVLFTCFKRNDKREVK 759


>gi|301782147|ref|XP_002926491.1| PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
          Length = 1608

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 141/745 (18%), Positives = 274/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 41  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 100

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 101 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 160

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 161 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 220

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 221 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 271

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 272 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 330

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 331 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 387

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 388 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 443

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 444 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 501

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 502 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 561

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 562 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 621

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 622 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 673

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 674 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 725

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 726 VDGFKPGQRKVLFTCFKRNDKREVK 750


>gi|313747302|dbj|BAJ41200.1| DNA gyrase subunit B [Bacillus sp. 2H604W]
          Length = 390

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 188/393 (47%), Positives = 263/393 (66%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS    +++ REG I+E+ F  G     L V G   +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSVETIVQVHREGQIHEIKFERGKTAQKLTVIGETNH-NG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F    +IF     + +D L HR+REL++LN  ++I++ D+R  E R  T  Y+GGI
Sbjct: 60  TTTRFKADPEIFKETTIYEFDILAHRIRELAYLNRGIKITITDERGEEERSTTYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L++ K P+ +    + G +D IS+++AM++N G+  N+  F NNI   +GGTH 
Sbjct: 120 RSYVEHLNQSKDPIHEPID-VLGEKDGISVEIAMQYNAGFSSNIFSFANNINTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  K+   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +
Sbjct: 179 SGFKTALTRVINDYARKNGLLKEADANLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +  S  +DG   ++ E+P  A+ I++K L A+  R AA++AR+ TRRK  L+++S
Sbjct: 239 SEVSQITNSLFSDGFERFMLENPTVARKIIEKGLMAARARVAAKKAREFTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS  +P   E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 299 LPGKLADCSSTNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITA GTGIG++ F++ K RYHKIII
Sbjct: 359 SNAEIRAMITAFGTGIGEE-FNLEKARYHKIII 390


>gi|58698128|ref|ZP_00373051.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535374|gb|EAL59450.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 271

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 138/270 (51%), Positives = 177/270 (65%), Gaps = 7/270 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MYIGDTD  SGLHHM+YEV+DNAIDESL GY D I V++N DGS +V+DNGRGIPTD+H+
Sbjct: 1   MYIGDTDDGSGLHHMVYEVIDNAIDESLAGYCDKIEVSINKDGSVSVTDNGRGIPTDIHE 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EEGISAAEVIMT+LHAGGKF+  +YKVSGGLHGVG+SVVNALSSWL+L I R    + M 
Sbjct: 61  EEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGISVVNALSSWLELTIWRNKKEHFMR 120

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           F +G    PL V     N  GT+VTF+PS++ F+  +F+Y TL+ R+REL+FLNS++ I+
Sbjct: 121 FEDGESIEPLKVVNENTNKRGTKVTFMPSTETFNGINFSYSTLESRIRELAFLNSNIDIT 180

Query: 210 LIDKRSPEPREITMFYKGGIEA-----FVSYLDRHKKPLMQSPIRIQG--SRDNISIDLA 262
           L D R+    E         +               K  +     ++G      IS++++
Sbjct: 181 LRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNKTHVTKIASMKGDAEDLGISLEIS 240

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           M WND Y+EN+LCFTNNI           L
Sbjct: 241 MEWNDSYYENMLCFTNNIRMVVRIWQDLDL 270


>gi|163256315|dbj|BAF95668.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3H]
          Length = 275

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 157/271 (57%), Positives = 196/271 (72%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           HM+YEV+DNAIDE+L G+A  + VTLN D S TV D+GRGIP D+HK EGISAAEVIMT+
Sbjct: 1   HMVYEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIHKGEGISAAEVIMTQ 60

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162
           LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L+LRI R+   + + F +G    PL V 
Sbjct: 61  LHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLELRIWRDDKEHYIEFAHGDAVAPLRVV 120

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
           G A    GTEVTF  + + F   ++++ TL+HRLREL+FLNS V I L D R    +   
Sbjct: 121 GEAPGKRGTEVTFHAAVETFKNVEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREE 180

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           M Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ
Sbjct: 181 MHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQ 240

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           +DGGTHL+G R ALTRQ+  Y E +   +K 
Sbjct: 241 RDGGTHLAGFRGALTRQVNGYAEANAKKEKI 271


>gi|238477946|gb|ACR43666.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
 gi|269849453|gb|ACZ49795.1| DNA gyrase subunit B [Aeromonas media]
 gi|269849465|gb|ACZ49801.1| DNA gyrase subunit B [Aeromonas media]
 gi|281486943|gb|ADA71019.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
 gi|281486957|gb|ADA71026.1| DNA gyrase subunit B [Aeromonas media]
 gi|299829784|gb|ADJ55575.1| DNA gyrase subunit B [Aeromonas media]
          Length = 374

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 223/377 (59%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|2196840|gb|AAB80837.1| DNA gyrase beta-subunit [Shewanella oneidensis MR-1]
          Length = 419

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 231/422 (54%), Positives = 310/422 (73%), Gaps = 4/422 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L    KF   + +V      VGVSVVNALS  L+L I+R+G ++E  + +G+ D
Sbjct: 1   EVIMTVLCRVCKFEVLTNEVYVDRPRVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS   FS  +F+++ L  R+RELSFLNS V I L+D+R  
Sbjct: 61  APIKEIGDAT-KTGTEIRFWPSEQTFSNVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ C
Sbjct: 120 KN--EFFKYEGGISAFVHYLNRNKNPVNKDLFHFMQERDDGITVEVAMQWNDGYQENIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVS+EV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSNEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++T RKG  D+  LPGKLADC E+DP  SE+++VEG+ AGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTLRKGAFDLGGLPGKLADCQEKDPGLSEIYIVEGEFAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+ARFDKML SQE+GTLITALG GIG   + ++K R   ++IMTDADVDG+HI T
Sbjct: 358 KILNVEKARFDKMLFSQEVGTLITALGCGIGGVVYTLDKTRGKYVVIMTDADVDGSHILT 417

Query: 516 LL 517
           LL
Sbjct: 418 LL 419


>gi|329582021|emb|CCA63154.1| DNA gyrase B subunit [Flavobacterium frigoris]
          Length = 391

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 177/388 (45%), Positives = 248/388 (63%), Gaps = 7/388 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L   +   +G +Y+  +  G    P+   G
Sbjct: 4   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLTATVHSSDGKVYQQEYEKGKALYPVKQIG 63

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEP 218
                 GT VTF P   IF+    F+YDTL  R+RELS+LN  + I+  DKR        
Sbjct: 64  ETT-KRGTIVTFYPDETIFTQTTEFSYDTLSARMRELSYLNKGITITFTDKRELDKDGNF 122

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 123 VSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDNEKGEIPVEVALIYNTSYTENIFSYVN 182

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 183 NINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVKVAEPQ 242

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D + A+LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 243 FEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARIIVQKVILAAQARHAAKKAREM 302

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPLRGKIL
Sbjct: 303 VQRKPVMGGGGLPGKLSDCSEQDPTKCEVYLVEGDSAGGTAKQGRDRAFQAILPLRGKIL 362

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIG 486
           NVE+A   K+  ++EI  + TALG  +G
Sbjct: 363 NVEKAMHHKVFENEEIRNIFTALGVTVG 390


>gi|281486939|gb|ADA71017.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 374

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 225/377 (59%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|50291033|ref|XP_447949.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51338747|sp|O93794|TOP2_CANGA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|49527260|emb|CAG60900.1| unnamed protein product [Candida glabrata]
          Length = 1406

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 158/718 (22%), Positives = 271/718 (37%), Gaps = 61/718 (8%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDT----------DGES---------- 39
           MS+    +  Y     Q +  L+ + KRP  YIG            D E+          
Sbjct: 1   MSEPKTASERY-----QKISQLEHILKRPDTYIGSVEIQEQEQWIYDEETDCMIDKTVNI 55

Query: 40  --GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
             GL  +  E+L NA D  +       I VT+N +     V ++G+GIP ++H++E I  
Sbjct: 56  VPGLFKIFDEILVNAADNKVRDPSMKRIDVTINPEENFIEVRNDGKGIPIEIHEKEKIYI 115

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+   L     + G  Y  ++ N 
Sbjct: 116 PELIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTLETADPKNGRKYVQTWENN 175

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+V F P    F ++  + D    ++ R+ +++     V + 
Sbjct: 176 MNVCHPPKITSYKKGPSYTKVAFKPDLSRFGMESLDSDILGVMRRRVYDINGSVRDVNVY 235

Query: 210 LIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           L  K             Y   +E      +        +   I   R +   ++A   +D
Sbjct: 236 LNGKPLKIRNFKNYVELYLKSLEKMRKMDNGESDTTPSNIPTILYERVSDRWEIAFAVSD 295

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + V  F N+I    GGTH++ +   + R+++         KK K+++     +    
Sbjct: 296 ISFKQV-SFVNSIATTTGGTHVNYIADQIVRKVSD------ILKKKKKNIKPYQIKNNMF 348

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +    +    + +    +  K+ + + 
Sbjct: 349 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCDISSDYINKIMKTDLATKIFEIAD 403

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
                   +    RK  +              +D  K  L L EGDSA      G A  G
Sbjct: 404 ENANNALKKSDGSRKSRITDYPKLEDANKAGTKDGYKCTLILTEGDSALSLAVAGLAVVG 463

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 464 RD--YYGCYPLRGKMLNVREATADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 521

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  +T  K ++ V    +L D
Sbjct: 522 MTDQDHDGSHIKGLIINFIETSFPGLLDIPGFLIEFITPIVKVTITKPIKKVISFFNLPD 581

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +   EE   +   +            +       L       H     ++ +I   
Sbjct: 582 Y--EKWREEESHKYSWKQKYYKGLGTSTSPEIIEYFSNLDTHLKKFHALQGDDKDLIDLA 639

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           F+ +   +       +           +E      IN   IL            VL+G
Sbjct: 640 FSKKKADDR-KEWLRQYEPGTVLDPTLNEIPISDFINKELILFSLADNVRSIPSVLDG 696


>gi|19909661|dbj|BAB87026.1| DNA gyrase subunit B [Zoogloea ramigera]
          Length = 403

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 218/406 (53%), Positives = 281/406 (69%), Gaps = 19/406 (4%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLV 160
           SYKVSGGLHGVGVS VNALS WL+L + R+G+ + M F  G               +PL 
Sbjct: 1   SYKVSGGLHGVGVSCVNALSKWLRLTVARDGHKHFMEFNRGHAVDRNIELVDGVETSPLK 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G      GT V +L   +IF   +++Y+ L  RLRELSFLN+ V+I L+D+R+ +   
Sbjct: 61  VIGDTT-KRGTRVHYLADEEIFGTVEYHYEILAKRLRELSFLNNGVKIRLVDQRTGKE-- 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCF 276
               + GG++ FV Y++R K  L  +     G        I++++AM+WND Y E VLC+
Sbjct: 118 EDFAFAGGVKGFVEYINRAKSVLHPTVFHSSGESIQAGVPITVEVAMQWNDSYAEQVLCY 177

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
           TNNIPQ DGGTHL+GLR+A+TR I  Y+E++  +KK K  + GDD REG   VLS+KMPD
Sbjct: 178 TNNIPQADGGTHLTGLRTAMTRVINKYIEENEIAKKAKVDISGDDMREGLACVLSVKMPD 237

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F+SQTK KLVS E R  VE  V   L+ +L E P++AK I  K+++AS  R+AARRAR
Sbjct: 238 PKFASQTKMKLVSGEARPAVEEVVAQKLADFLLERPIDAKTICGKIVEASRAREAARRAR 297

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGK
Sbjct: 298 EMTRRKGVLDGVGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 357

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +LNVERARFDK++SS++I TLITALGT IG D F   KLRYH+II+
Sbjct: 358 VLNVERARFDKLISSEQITTLITALGTSIGADDFKPEKLRYHRIIL 403


>gi|156095793|ref|XP_001613931.1| DNA gyrase subunit b [Plasmodium vivax SaI-1]
 gi|148802805|gb|EDL44204.1| DNA gyrase subunit b, putative [Plasmodium vivax]
          Length = 936

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 214/766 (27%), Positives = 346/766 (45%), Gaps = 146/766 (19%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y+ S GLHGVG+SV NALSS++K+++ R G I+ +    G +  PL V     +  GT++
Sbjct: 228 YRFSSGLHGVGLSVANALSSFMKVKVFRRGKIHSIELEKGKVVTPLSVRDCPVSKRGTQI 287

Query: 174 TFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------- 215
            + P   IF      N + +++R+ +L++LN  +     D+R+                 
Sbjct: 288 HYRPDPTIFKNTIRHNAEMIRNRIHQLAYLNDRLSFYFYDERAAKKAAAEAENAANAADL 347

Query: 216 ----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI---RIQGSRDN 256
                                  + ++GG++ ++  L ++K  L +       I     N
Sbjct: 348 ADVADHAGNTAEHNNLDFYPYEVIKHEGGLDEYMESLTKNKASLFKDSNKVISITCHHKN 407

Query: 257 ISIDLAMRWNDG-YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           + IDL ++W  G YHE+++ F NN+   DGGTH+  ++ A++R +   ++K+  + ++  
Sbjct: 408 VHIDLRLKWTQGEYHEHIISFVNNVNTTDGGTHVDAMKYAISRCVNFNIKKN-EATRNFV 466

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ G+  REG T++LSIKM +P F  QTK KL S  ++ ++ES + + LS   +  P   
Sbjct: 467 NIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFEKLSEIFDFEPNLL 526

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDPKKSELFLVEGDS 434
             I  K L A    + A+ ARDL R K     A++ PGKL DC   D  ++E+F+VEGDS
Sbjct: 527 NTIYLKALQAKASDEEAKAARDLIRSKNNQCYATILPGKLVDCISDDINRNEIFIVEGDS 586

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKM-LSSQEIGTLITALGTGI-------- 485
           A GSAKQ R+RE QAILPL+GKILNVE+ + +K    + E+ +LITA+G  +        
Sbjct: 587 AAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITAIGLSVSCENSKIA 646

Query: 486 ------------------------------------GQDSFDINKLRYHKIIIMTDADVD 509
                                                ++      LRY KIIIMTDADVD
Sbjct: 647 KGKSTINSKKKDLKKKYDLRSGKKENAQVNNALVSKKKNPLFDTPLRYGKIIIMTDADVD 706

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G HIR LLLTF +R   ++I NG +++  PPLY +T  +       E  ++ + ++   S
Sbjct: 707 GEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDATIKETVMKQFNVSTKNS 766

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
           + +        +     L +  D +   +                +    G    +    
Sbjct: 767 KTLIHTYSDDELNVLLGLLDK-DRSSHAEHRSAQLGRG-------KPTRGGNLPSDDRGS 818

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKY 689
               LA      LNF        ++G+              V ++  L         ++ 
Sbjct: 819 GLAGLAD-----LNF-------GYNGADE------------VTKEGELSTDDSSVANTEN 854

Query: 690 KRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749
               +N     +           + +I               KG+        GEM A Q
Sbjct: 855 ADPAANSAFFTFS---------KRYEIQRF------------KGL--------GEMMADQ 885

Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           LW TT++P  R L+RV ++DA +A++L   LMG++ + R+ FI EN
Sbjct: 886 LWSTTMDPRVRKLIRVTVSDAMRANNLIFSLMGEDSKLRKSFILEN 931



 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/106 (46%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           + YDA  I IL+GL+AV+KRP MYIG+TD   GLH +++E++DN++DE      + I + 
Sbjct: 51  NDYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNEIKIV 109

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           ++ D S T+ DNGRGIP D+H++   SA E ++T LH+G KF    
Sbjct: 110 IHQDESVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFVDDE 155


>gi|86169573|gb|ABC87026.1| DNA gyrase subunit B [Fructobacillus pseudoficulneus]
          Length = 393

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 189/394 (47%), Positives = 268/394 (68%), Gaps = 3/394 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDT 169
              YKVSGGLHGVG SVVNALS+ L +++ R+G +Y M F  G +  P+    G    + 
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTTLDVQVVRDGQLYYMDFETGHVKTPMTKKDGPLPIER 60

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F P  DIF     +NY TL  R+REL+FLN  ++IS+ DKRS EP + +  ++GG
Sbjct: 61  GTIVHFKPDPDIFQETTVYNYQTLLTRVRELAFLNKGLRISIEDKRSDEPLKESFHFEGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ +VSYLD  K+ L   P+ ++G  + I +++A+++  G  EN+  FTNNI   +GGTH
Sbjct: 121 IKEYVSYLDEEKQALFDEPVYVEGEENGIVVEVALQYTTGVKENLKTFTNNINTYEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ALTR I  Y  K    K+   S+ G+D REG T+++SIK PDP+F  QTK KL 
Sbjct: 181 ETGFKTALTRVINDYARKQKLIKEGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +S+ R   +   ++  + ++ E+P  AK IV+K   A   R +A+RAR++TR++  L+I+
Sbjct: 241 NSDARQATDRMFSETFARFMLENPAVAKQIVEKGSLAQRARLSAKRAREMTRKQSGLEIS 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLAD + +DP+ SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNV +A  D++
Sbjct: 301 NLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVGKATLDRV 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L+++EI +L TALG+G G D FD++K  YHKIII
Sbjct: 361 LANEEIRSLFTALGSGFG-DDFDVSKANYHKIII 393


>gi|18369808|dbj|BAB84099.1| DNA topoisomerase II [Aspergillus candidus]
          Length = 1096

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 149/701 (21%), Positives = 261/701 (37%), Gaps = 51/701 (7%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLD 50
              Q L  L+ + KRP  YIG  +  +                      GL+ +  E++ 
Sbjct: 2   SKYQKLTQLEHIIKRPDTYIGSIEKATQQMWVYDSATESMEFREVTFVPGLYKIFDEIVV 61

Query: 51  NAID-----ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           NA D     E +    D I +T++ + G  +V +NGRGIP ++H +E I   E+I   L 
Sbjct: 62  NAADNKQNDEKM----DEIRITIDRESGVISVWNNGRGIPIEIHSKEKIYVPELIFGHLL 117

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVT 162
               ++    KV+GG +G G  + N  S+   +     R+G  Y  ++ + +        
Sbjct: 118 TSSNYDDGQMKVTGGRNGFGAKLCNVFSTEFSIETVDSRQGKKYVQTWTDNMSKVGKAKI 177

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            SA  +  T+VTF P    F ++  + D      R +  L  + ++++    S  P    
Sbjct: 178 TSAKGEDYTKVTFKPDYKKFGMEGMDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPVR-N 236

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                 +       +R ++        +  S  +   ++    +DG  + V  F N+I  
Sbjct: 237 FKKYMEMYTKAIKKERGEEAANDKSEIVTAS-PDPRWEVGFAVSDGSFQQV-SFVNSIAT 294

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG+H++ +   +        E      K   ++     R      ++  + +P F+SQ
Sbjct: 295 TSGGSHVNYIADQI---CNRLAEAVKKKNKQGATLKASQIRNHIFIFVNALIVNPAFTSQ 351

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE+L +   +   +  ++D     + +  +   I+      A  +       +      
Sbjct: 352 TKEQLTTKPSQFGSKCILDDDFYKKVLKTEVMTNILHFAEKKADQLLKKTDGGKRSRMNN 411

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LN
Sbjct: 412 PKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLN 465

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A  D++  + EI  + + +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ 
Sbjct: 466 VRDASIDQISKNAEIQNIKSFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLIN 525

Query: 520 FFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           F   Q PSL+      I    P+  + +G      K +         Q   E        
Sbjct: 526 FLQVQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKSKSFFTMPEYEQWKEEHKNDRAWQ 585

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                        D  +    L +     H     E  +I   F+ +   E       + 
Sbjct: 586 HKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQDHEAQLIDLAFSKKKADER-KEWLRQY 644

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                      + ++   IN   IL            V++G
Sbjct: 645 KPGTFLDHSTKQITYTDFINKELILFSMADNQRSIPSVVDG 685


>gi|183448231|gb|ACC62877.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|238477936|gb|ACR43661.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|238477940|gb|ACR43663.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|238477942|gb|ACR43664.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192914|gb|ADD83432.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192918|gb|ADD83434.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192920|gb|ADD83435.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192926|gb|ADD83438.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192928|gb|ADD83439.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192932|gb|ADD83441.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 374

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 225/377 (59%), Positives = 286/377 (75%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|213391518|gb|ACJ46500.1| gyrase B subunit [Pseudoalteromonas sp. BSw10087]
          Length = 366

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 214/361 (59%), Positives = 273/361 (75%), Gaps = 6/361 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  LKL I+REG ++E ++ +G+ D PL V G
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYSHGVPDAPLAVIG 67

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            A + TGTE+ F PS   F+  DF+YD L  RLRELSFLNS V I L D+R  E +    
Sbjct: 68  DA-DTTGTELRFWPSDQTFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHF 125

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIP 281
            Y+GGI AFV YL+R+K P+ +           D I + ++M+WND Y EN+ CFTNNIP
Sbjct: 126 KYEGGIRAFVEYLNRNKTPIHKGVFHFTHTREEDGIVVGVSMQWNDAYQENIYCFTNNIP 185

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRF 339
           Q+DGGTHL+G RSALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+F
Sbjct: 186 QRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKF 245

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEV+S VE  + +  + +L EHP +AKI+V K++DAS  R+AAR+AR++T
Sbjct: 246 SSQTKDKLVSSEVKSAVEQAIAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMT 305

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILN
Sbjct: 306 RRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 365

Query: 460 V 460
           V
Sbjct: 366 V 366


>gi|86169575|gb|ABC87027.1| DNA gyrase subunit B [Weissella paramesenteroides]
          Length = 394

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 184/395 (46%), Positives = 262/395 (66%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGND 168
              YKVSGGLHGVG SVVNALS+ L + + R+G  + M F  G +   +           
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTNLDVLVVRDGKGFAMDFERGHVKTEMHEIAIDDKPVS 60

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GT V F P  DIF     F+Y TL +R+REL+FL+  ++IS+ D R  EP   +  Y+G
Sbjct: 61  RGTIVHFAPDPDIFRETTVFDYKTLMNRVRELAFLSKGLRISITDMRPEEPVVESFHYEG 120

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+ +V +L+ +K  +   PI ++G  ++I +++++++ D +H N+L FTNNI   +GGT
Sbjct: 121 GIKEYVDFLNVNKDVIFNEPIYVEGMENDIDVEVSLQYTDDFHSNLLSFTNNIHTYEGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G +SALTR I  Y  K+   K +   + GDD REG T+++S+K PDP+F  QTK KL
Sbjct: 181 HETGFKSALTRVINDYARKNKILKDNDDPLSGDDVREGLTAIVSVKHPDPQFEGQTKTKL 240

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +S+ R+ V+   ++  + ++ E+P  AK IV+K + A   R AA+RAR+ TR+K  L+I
Sbjct: 241 GNSDARTAVDRMFSETFARFMMENPTTAKQIVEKGILAGKARMAAKRAREATRKKSGLEI 300

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A+LPGKLAD + +DP+ SELF+VEGDSAGGSAKQGR R  QAILP+RGKILNVE+A  +K
Sbjct: 301 ANLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASMEK 360

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +L + EI +L TA+GTG G   FD+ K +YHK+II
Sbjct: 361 ILGNDEIRSLFTAMGTGFG-TDFDVTKAKYHKLII 394


>gi|291045133|ref|NP_001094328.1| topoisomerase II beta [Rattus norvegicus]
 gi|109945583|dbj|BAE96971.1| DNA topoisomerase IIbeta [Rattus norvegicus]
          Length = 1614

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 140/745 (18%), Positives = 273/745 (36%), Gaps = 77/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 43  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 102

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 103 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 162

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 163 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 222

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 223 YTCITFQPDLAKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 273

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 274 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 332

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 333 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 389

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 390 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 445

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILN  
Sbjct: 446 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNAR 503

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 504 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 563

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 564 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWEKHIENQKAWKIKYYK 623

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 624 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 675

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG      +            F+ +   +FS     + I S  +
Sbjct: 676 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPS--L 727

Query: 698 EENYLTI-----LSLICNGDKIKIT 717
            + +         +     DK ++ 
Sbjct: 728 VDGFKPGQRKVLFTCFKRNDKREVK 752


>gi|317030635|ref|XP_001392968.2| DNA topoisomerase 2 [Aspergillus niger CBS 513.88]
          Length = 1707

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 146/698 (20%), Positives = 255/698 (36%), Gaps = 61/698 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHM 44
            S+  ++  Q L  L+ + KRP  YIG  +  +                      GL+ +
Sbjct: 128 KSNNASEKYQKLTQLEHIIKRPDTYIGSVERTTQQMWVYSSESDGMEYREVSYVPGLYKI 187

Query: 45  IYEVLDNAID-----ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEV 98
             E++ NA D     E++      I VT++ + G  +V +NGRGIP ++H +E I   E+
Sbjct: 188 FDEIVVNAADNKQNDENM----SEIRVTVDRESGVISVWNNGRGIPIEMHAKEKIYVPEL 243

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILD 156
           I   L     ++    KV+GG +G G  + N  S+   +  +   +   Y  ++   +  
Sbjct: 244 IFGHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQDSSQKKKYRQTWTENMTK 303

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
                   A  +  T+VTF P    F +   + D      R +  L  + ++++    + 
Sbjct: 304 IGKAKITEAKGEDYTKVTFKPDYAKFGMDGMDDDFEALVKRRVYDLAGTAKVNVKLNGTR 363

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
            P      Y       +        P  +    I     +   ++    +DG  + V  F
Sbjct: 364 IPIRGFKKYMEMYTKAIRKERGDTGPAPKDE--IITCSPDPRWEVGFAVSDGAFQQV-SF 420

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N+I    GGTH++ +   +        E+     K+  ++     R      ++  + +
Sbjct: 421 VNSIATTSGGTHVNYIADQI---CNRLAEQVKKKNKNGATLKTAQIRNHIFIFVNALIVN 477

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F+SQTKE+L +   +   +  +++     + +  +   I+      A  +       R
Sbjct: 478 PAFTSQTKEQLTTKASQFGSKCVLDEDFYKKILKTAVMENILHFAQQKADQMLKKTDGGR 537

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPL 453
                   L  A+  G       +D     L L EGDSA G A  GR+    +   + PL
Sbjct: 538 RSRMNNPKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPL 591

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNV  A FD++  +QEI  +   LG    ++  D   LRY  ++IMTD D DG+HI
Sbjct: 592 RGKLLNVRDASFDQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHI 651

Query: 514 RTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGI-----TRGKSLQYVKDEESLEDYLINQS 567
           + LL+ F   Q PSL+      I    P+  +           +        E +     
Sbjct: 652 KGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAEEHQ 711

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
                                   D  +    L +     H     E  +I   F+ +  
Sbjct: 712 -----HERGWDHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDNEAELIELAFSKKKA 766

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
            E       +            + ++   IN   IL  
Sbjct: 767 DER-KEWLRQFKPGTFLDHSVEKITYTDFINKELILFS 803


>gi|327275489|ref|XP_003222506.1| PREDICTED: DNA topoisomerase 2-alpha-like [Anolis carolinensis]
          Length = 1559

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 128/663 (19%), Positives = 241/663 (36%), Gaps = 60/663 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 37  YQKKTQLEHILLRPDTYIGSVEQVTQQMWVFDEEIGLNCRDVTFVPGLYKIFDEILVNAA 96

Query: 54  DESLE-GYADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I +T++ +  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 97  DNKQRDKKMSCIKITIDPENNTVSVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 156

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE    ++ ++ N +     +       + 
Sbjct: 157 DEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKKRFQQTWSNNMGKAGEMKLKYFDGED 216

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +   + D    +  R  +++  ++ V + L   +            
Sbjct: 217 FTCITFQPDLAKFKMTTLDKDIVALMSRRAYDIAGASNGVTVFLNGNK---------LPV 267

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     + ++I     N   ++ +  ++   + V  F N+I    GG
Sbjct: 268 RGFRSYVDLYIKDKVDETGNLLKIIHEEVNSRWEVCLTMSEKGFQQV-SFVNSIATTKGG 326

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +   +   ++      K   +V     +      ++  + +P F SQTKE 
Sbjct: 327 RHVDYVADQI---VNKLIDVVKRRNKGGVAVKPFQVKNHMWIFINCLIENPTFDSQTKEN 383

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +            +++             + I+  V   +         +    +   + 
Sbjct: 384 MTLQAKSFGSTCKLSEKFIKGAVSC-GIVENILNWVKFKAQ---NQLNKKCSAVKHTRIK 439

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   ++     L L EGDSA      G    GR R    + PLRGK+LNV 
Sbjct: 440 GIPKLDDANDAGSKNSINCTLILTEGDSAKTLAVSGLGVVGRDR--YGVFPLRGKMLNVR 497

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 498 EASHKQIMENAEINNIIKIVGLQYKKTYDDEESLRTLRYGKIMIMTDQDQDGSHIKGLLI 557

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
            F     PSL+ + FL     P+  +++ K           E++  +             
Sbjct: 558 NFIHHNWPSLLRHRFLEEFITPIVKVSKNKEEISFYSIPEFEEWKSSN-----SNYRNWK 612

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                        +      ++ +   P       + A I+  F+ +   +    L S +
Sbjct: 613 TKYYKGLGTSTSKEAKEYFAEMTRHRIPFKYSGPEDDAAITLAFSKKKIDDRKEWLTSFM 672

Query: 639 ANR 641
            +R
Sbjct: 673 EDR 675


>gi|281486945|gb|ADA71020.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 374

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 222/377 (58%), Positives = 286/377 (75%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK +SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKTISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|291399726|ref|XP_002716252.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Oryctolagus
           cuniculus]
          Length = 1667

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 141/722 (19%), Positives = 269/722 (37%), Gaps = 80/722 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 98  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEEVGMNCREVTFVPGLYKIFDEILVNAA 157

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I ++++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 158 DNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 217

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 218 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 277

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 278 YTCITFQPDLAKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 328

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 329 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 387

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 388 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 444

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 445 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 500

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 501 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 558

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 559 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 618

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 619 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 678

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 679 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 730

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG       L ++   G   + +     I     K   +FSN  
Sbjct: 731 -----NFMEDRRQRRLHG-------LPEQFLYGTATKHLTYNDFIN----KELILFSNSD 774

Query: 698 EE 699
            E
Sbjct: 775 NE 776


>gi|194477400|gb|ACF74796.1| DNA gyrase subunit B [Halorubrum lacusprofundi]
          Length = 405

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 271/406 (66%), Gaps = 9/406 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGS--AGNDTGTE 172
           VSGGLHGVGVSVVNALS  L++ +KR+G +Y   F  G                 +TGT 
Sbjct: 1   VSGGLHGVGVSVVNALSERLEVEVKRDGGVYRHEFARGEPAEDGFERVRDLNDDEETGTY 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP-----REITMFYKG 227
           + F P  +IF    F + TL  RLREL+FLNS V ++LID+R  E       E T  Y+G
Sbjct: 61  IRFWPDEEIFETTAFEFSTLASRLRELAFLNSGVAVTLIDERDEEGVDDAGDEETFRYEG 120

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI  FV YL+  + P+    I  +   D+I +++AM+  +    +V  F NNI  ++GGT
Sbjct: 121 GIREFVGYLNEARTPIHDEVIYFEDEDDDIHVEVAMQATEELQGSVHAFANNINTREGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G ++ALTR +  Y          + ++ G+D REG T+V+S+K PDP+F  QTK KL
Sbjct: 181 HLTGFKTALTRTVNDYANTHGLVDDLEANLKGEDVREGLTAVISVKHPDPQFEGQTKTKL 240

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SEVR +VES  +D L  + EE+P  A+ +V K  +A+  R AA++A +LTRRK  L+ 
Sbjct: 241 GNSEVRGIVESATHDKLGTFFEENPDTARKVVHKAAEAARARKAAKKAEELTRRKSALES 300

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            +LPGKLADC  RDP+++ELF+VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ R D+
Sbjct: 301 TALPGKLADCQTRDPEEAELFVVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKHRLDR 360

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           +L + EI  LITA+G GIG++ FDI+ +RY+KIIIMTDADVDGAHI
Sbjct: 361 ILENDEIRALITAIGAGIGEE-FDIDDVRYNKIIIMTDADVDGAHI 405


>gi|317420226|emb|CBW30270.1| gyrase subunit B [Psychrobacter namhaensis]
          Length = 383

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 221/386 (57%), Positives = 287/386 (74%), Gaps = 3/386 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L++ I REG+ Y  ++ +G+ D  +       + TGT++
Sbjct: 1   YKVSGGLHGVGVSVVNALSKKLEMNIWREGHHYHQTYTDGVPDADIQQ-MEPTDKTGTQI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS+D+F+   F YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FV
Sbjct: 60  RFYPSADVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           SY++  K  +           + IS+++A++W D Y+E VLCFTNNIPQ+DGGTHLSG R
Sbjct: 118 SYINAGKDGINDVFHFTSDQDEGISVEVALQWTDTYNEKVLCFTNNIPQRDGGTHLSGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALTR + SY+++    KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 SALTRGLNSYMDRENLFKKEKIAATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES ++D  + +L E+P   K I  K++DA+  RDAAR+AR++TRRK  LDIA LPGK
Sbjct: 238 SAVESAMSDKFNDYLLENPSAGKAIANKIIDAARARDAARKAREMTRRKTTLDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFD+MLSS E
Sbjct: 298 LADCQEKDPSLSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDRMLSSAE 357

Query: 474 IGTLITALGTGIGQDSFDINKLRYHK 499
           +G LITALG GIG D ++ +K+RYHK
Sbjct: 358 VGNLITALGCGIGPDEYNPDKVRYHK 383


>gi|291192916|gb|ADD83433.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 374

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 225/377 (59%), Positives = 286/377 (75%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG D ++ +
Sbjct: 358 LITALGCGIGHDEYNPD 374


>gi|19912105|dbj|BAB88364.1| DNA gyrase subunit B [Cytophaga sp. MBIC01355]
 gi|19912107|dbj|BAB88365.1| DNA gyrase subunit B [Cytophaga sp. MBIC01356]
          Length = 391

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 183/392 (46%), Positives = 255/392 (65%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   +  GT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSEHLKATVHRDGKIWEQEYERGKTLYPVKAVGDT-DKRGTIVTF 59

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIE 230
            P  +IF    +++YDTL  RLREL++LN  + I LIDKR  +        T   + G++
Sbjct: 60  KPDPEIFKQTLEYSYDTLASRLRELAYLNKGITIHLIDKRVKKEDGSFEGETFHSEEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD +++PLMQ  I  +G ++ + +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFIQFLDGNREPLMQEAISFEGEKNGVPVEVAMIYNTSYAENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y ++S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L+ +LEEHP  AK IV+KV+ A+  R AA++AR++ +RK V+ I  L
Sbjct: 240 EVSASVSQAVSEMLTDYLEEHPDTAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP + E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPAQCEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAMTHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +        +KLRYH
Sbjct: 360 NEEIKNIFTALGVTIGTEEDSKALNLSKLRYH 391


>gi|315047873|ref|XP_003173311.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
 gi|311341278|gb|EFR00481.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
          Length = 1672

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 142/697 (20%), Positives = 251/697 (36%), Gaps = 49/697 (7%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           +         +D  Q +  L+ + KRP  YIG  +                         
Sbjct: 117 TTETAEGGGSSDKYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVP 176

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D          I VTL+ + G  +V +NGRGIP ++HK+E I   E
Sbjct: 177 GLYKIFDEILVNAADNKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEHIYIPE 236

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL 155
           +I   L     +N    KV+GG +G G  + N  S+   +          +++++   + 
Sbjct: 237 LIFGHLLTSSNYNDMQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKKFKLTWTKNMS 296

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLID 212
                    +  D  T+VTF P    F +   + D    ++ R+ +++       + L  
Sbjct: 297 TMGKAKITESKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCG-TTVKLNG 355

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
            R P                 +      +        I     +   ++    +DG  + 
Sbjct: 356 TRIPVKSFKKYMEMYTK----AIKTERGEDPTSDKNDIITESPDRRWEIGFTVSDGSFQQ 411

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N+I    GGTH++ +   +        +      K   ++     +      ++ 
Sbjct: 412 V-SFVNSIATTSGGTHVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNS 467

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           ++ +P F+SQTKE+L +   +   +  V+D     + +  +   I+      A  +    
Sbjct: 468 QIVNPAFTSQTKEQLTTRSSQFGSKCIVSDDFLKKVMKTRVMDDILHFAEKKADQILKKT 527

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQA 449
              R        L  A+  G       ++     L L EGDSA G A  GR+    +   
Sbjct: 528 DGNRRSRMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFG 581

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           + PLRGK+LNV  A  D++  + EI  +   +G    ++  D   LRY  ++IMTD D D
Sbjct: 582 VFPLRGKLLNVRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHD 641

Query: 510 GAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           G+HI+ LL+ +     P+L+   GFL     P+  + +G        +         +  
Sbjct: 642 GSHIKGLLINYLQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWK 701

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
                     K         +  D  +    L +     H     E  +I   F+ +   
Sbjct: 702 EAHAHDKKWQKKYYKGLGTSSTEDAQVYFQDLDRHLKQFHTLQDKEAELIELAFSKKKAD 761

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
           E       +            + ++   IN   IL  
Sbjct: 762 ER-KEWLRQFKPGTYLDHSMDQITYTDFINKELILFS 797


>gi|19909583|dbj|BAB86987.1| DNA gyrase subunit B [Maricaulis maris]
          Length = 382

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 240/382 (62%), Positives = 295/382 (77%), Gaps = 1/382 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFL 176
           GGLHGVGVSVVNALS W+ L I R G  + M F  G  +  L V G A     GTEV F+
Sbjct: 1   GGLHGVGVSVVNALSDWMDLTIWRNGKRHWMRFRRGDAEEDLKVMGDAEPGQKGTEVRFM 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + F++ +FN +TLQHRLREL+FLNS V+I+L D+R  E    TM Y GG+ AFV++L
Sbjct: 61  PSEETFTMTEFNRETLQHRLRELAFLNSGVKITLRDEREAELYSDTMVYDGGVAAFVAHL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+K P+   P+ I G +D ++++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKTPIFTPPVLITGEKDGVAVEAALEWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I +Y   S  + K K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  V
Sbjct: 181 TRIINTYAASSGLASKAKVSISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAV 240

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  V + L+ W EEHP EAK++V K+++A+  R+AAR+AR+LTRRK  L+I+SLPGKLAD
Sbjct: 241 EGAVGEALAEWFEEHPTEAKMVVGKIIEAAAAREAARKARELTRRKSALEISSLPGKLAD 300

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP KSELF+VEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS+++GT
Sbjct: 301 CQEKDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSEQVGT 360

Query: 477 LITALGTGIGQDSFDINKLRYH 498
           LITALGTGIG+D  +  KLRYH
Sbjct: 361 LITALGTGIGRDQINYEKLRYH 382


>gi|303276424|ref|XP_003057506.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461858|gb|EEH59151.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1473

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 145/696 (20%), Positives = 259/696 (37%), Gaps = 73/696 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGD---TDGES-------------------GLHHMIYEVL 49
            D  Q    L+ +  RP  Y+G    T+  +                   GL+ +  E+L
Sbjct: 56  EDIYQKKTQLEHILLRPDTYVGSCEKTEALTWVYDKETNKLVQRNMSFVPGLYKIFDEIL 115

Query: 50  DNAIDESLEGYADIIT----VTLNMD-----GSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
            NA D       + +     VTL +D     G+  V ++G GIP ++HKEEG+   E+I 
Sbjct: 116 VNATD-------NKVRDPTMVTLRVDIDSAEGTIKVFNDGNGIPVEMHKEEGVYVPELIF 168

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-LD 156
             L     ++    KV+GG +G G  + N  S+   +    +G     Y   F N +   
Sbjct: 169 GHLLTSSNYDDNEKKVTGGRNGYGAKLANIFSTEFIIETC-DGARERRYRQVFKNNMGEK 227

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
              VVT    +D  T +TF P    F++     DT+    + +     +     I K + 
Sbjct: 228 CEPVVTKCKKSDNWTCITFKPDLSKFNMTHLEDDTVALMCKRVYDAAGN-----IGKNTK 282

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
                      G   +V      ++   +        + N   ++ +  +D  +     F
Sbjct: 283 IFLNGDRLKVKGFSDYVDLYLEGRENAPKVF-----EKVNDRWEVCVTISDTGNFQQCSF 337

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I    GGTH++ +        T  +EK    +K  +++     +      ++  + +
Sbjct: 338 VNGICTMKGGTHVNAVAD---DVATKLLEKIKKKEKSCKNLKSTHVKNHLWVFVNALIEN 394

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F SQTKE L +        +F +   ++      + +  IV+++L  +  + +    +
Sbjct: 395 PAFDSQTKETLNTRAA-----NFGSKFSASDAVIKKMMSSGIVEQILSWASFKQSKELKK 449

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAIL 451
           +   +K  L          D   ++ +   L L EGDSA      G +  GR R    + 
Sbjct: 450 NDGAKKTRLTGIPKLDDANDAGGKNSEHCTLILTEGDSAKALAVSGLSVVGRDR--YGVF 507

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNV  A  ++++++ EI  +   LG   G        LRY  I+IMTD D DG+
Sbjct: 508 PLRGKLLNVRDASHEQIMNNAEISYIKQILGLKHGIQYESAKSLRYGHIMIMTDQDHDGS 567

Query: 512 HIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           HI+ LL+ F     PSL+   GFL     P+   T+GK  +        E++  +   + 
Sbjct: 568 HIKGLLINFLHAHFPSLLKIPGFLVEFITPIIKATKGKKSEVFYTMPEYENFKESLGDAG 627

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
                      +      +   +A +    +         +      +  +   +   + 
Sbjct: 628 TKGWSIKYYKGLG----TSTSKEAKEYFAALAHHRKTFTWSDDNSGDLIDMAFSKKRVDD 683

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
                +             +  +   +N   IL  R
Sbjct: 684 RKQWLTAYEPGTFLDMTGDDVGYDDFVNKELILFSR 719


>gi|210142366|dbj|BAG80974.1| DNA gyrase subunit B [Paenibacillus macquariensis subsp.
           macquariensis]
          Length = 389

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 198/393 (50%), Positives = 282/393 (71%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVGVSVVNALS  + + +K +G+IY+  +  G+    + V G + ++ G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSEKVVVTVKVKGHIYQQEYRRGVPQYDVRVIGDS-DEHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T VTF P  +IF+    ++Y TL  R+RE++FLN  + ++L D+R+     +   Y+GGI
Sbjct: 60  TTVTFHPDPEIFTETTVYDYGTLLTRVREIAFLNKGIALTLNDERADSS--VRFMYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + +V +L+  K+ L + PI ++GSRD + +++A+++ND Y EN+  F NNI   +GGTH 
Sbjct: 118 KEYVKFLNEKKEALHEEPIYVEGSRDMMQVEVALQYNDSYTENIYSFCNNINTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K    ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 SGFKSALTRIINDYARKTGVIKDSNSNLSGDDVREGLTAIISVKIPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES  ++ L  +LEE+P  ++ I++K L AS  R+AAR+AR+LTRRK  L++++
Sbjct: 238 SEVRGIVESLFSEKLQEFLEENPAVSRRILEKGLQASRAREAARKARELTRRKSALEVSA 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITA+GTGIG+D FD++K RYHK+II
Sbjct: 358 SNAEIRNMITAMGTGIGED-FDLSKARYHKVII 389


>gi|218516074|ref|ZP_03512914.1| DNA gyrase subunit B [Rhizobium etli 8C-3]
          Length = 362

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 253/360 (70%), Positives = 308/360 (85%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+Q SYKVSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PL VTG A
Sbjct: 3   GGKFDQNSYKVSGGLHGVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGDA 62

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGTEV+F+PSS+ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y
Sbjct: 63  PDATGTEVSFMPSSETFTMTEFDYGTLEHRLRELAFLNSGVRILLSDKRHSDIKQEEMRY 122

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG+EAFV+YLDR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DG
Sbjct: 123 DGGLEAFVAYLDRAKKPLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDG 182

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R+ALTRQ+ SY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+
Sbjct: 183 GTHMAGFRAALTRQVVSYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKD 242

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEVR VVES VN+ LS W EEHP EAKI+V KV++A+  R+AAR+AR+LTRRKG L
Sbjct: 243 KLVSSEVRPVVESLVNEALSTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGAL 302

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DIASLPGKLADCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF
Sbjct: 303 DIASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 362


>gi|19909533|dbj|BAB86962.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 394

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 218/397 (54%), Positives = 288/397 (72%), Gaps = 15/397 (3%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVT 162
           KVSGGLHGVGVS VNALSSWL+L ++R G    M F  GI              +P++VT
Sbjct: 1   KVSGGLHGVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVT 60

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
           G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +     
Sbjct: 61  GDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DD 117

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             + GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ
Sbjct: 118 FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQ 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQ
Sbjct: 178 RDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TRRK
Sbjct: 238 TKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTRRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           GVLD   LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+
Sbjct: 298 GVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+
Sbjct: 358 ARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHR 394


>gi|45384180|ref|NP_990413.1| DNA topoisomerase 2-beta [Gallus gallus]
 gi|3122959|sp|O42131|TOP2B_CHICK RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
 gi|2463529|dbj|BAA22540.1| DNA topoisomeraseII_beta [Gallus gallus]
          Length = 1627

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 141/743 (18%), Positives = 272/743 (36%), Gaps = 73/743 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 60  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 119

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I ++++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 120 DNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 179

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            D 
Sbjct: 180 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPKIKHFEGDD 239

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +++ + D    +  R  +L+     V++ L  K+            
Sbjct: 240 YTCITFQPDLSKFKMENLDKDIVSLMTRRAYDLAGSCKGVKVMLNGKK---------LPV 290

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 291 NGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGFQQI-SFVNSIATTKGG 349

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 350 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFVNCLIENPSFDSQTKEN 406

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 407 M-TLQPKSFGSKCQLSEKFFKAASNCGIIESILNWVKFKAQ---TQLNKKCSSVKHSKIK 462

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +      L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 463 GIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 520

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 521 EASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLI 580

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 581 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENHKAWKIKYYK 640

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 641 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 692

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI---FS 694
                NF+ ++ ++  HG      +            F+ +   +FS     + I     
Sbjct: 693 -----NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPSLVD 746

Query: 695 NRIEENYLTILSLICNGDKIKIT 717
                    + +     DK ++ 
Sbjct: 747 GLKPGQRKVLFTCFKRNDKREVK 769


>gi|328349737|emb|CBY89176.1| GyrB protein [Flavobacterium sp. R-38420]
          Length = 398

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 177/394 (44%), Positives = 253/394 (64%), Gaps = 7/394 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPL 159
           T++ AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPV 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS--- 215
              G      GT VTF P   IF+   +++YDTL  R+RELSFLN  + ++  DKR    
Sbjct: 61  KQIGETT-KRGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSFLNKGITVTFTDKRELDK 119

Query: 216 -PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                        G++ ++ YLD ++ P++   I +   +  I +++A+ +N  Y EN+ 
Sbjct: 120 DGNFVSEVFHSDEGLKEYIRYLDSNRDPIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + NNI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+
Sbjct: 180 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVKV 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL + EV S V   V++ +  +LEE+P +A+IIV+KV+ A+  R AA++
Sbjct: 240 QEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAKK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG+AKQGR R  QAILPLR
Sbjct: 300 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILPLR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           GKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 360 GKILNVEKAMHHKVFENEEIRNIFTALGVTVGTE 393


>gi|18369820|dbj|BAB84105.1| DNA topoisomerase II [Penicillium marneffei]
          Length = 1162

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 150/701 (21%), Positives = 262/701 (37%), Gaps = 51/701 (7%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLD 50
           D  Q L   + + KRP  YIG  +  +                      GL+ +  E++ 
Sbjct: 20  DKYQKLTQYEHIIKRPDTYIGSIEKTTQQMWVYDSATESMAFREVTFVPGLYKIFDEIVV 79

Query: 51  NAID-----ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           NA D     E +    D I +T++ + G  +V +NGRGIP ++H +E I   E+I   L 
Sbjct: 80  NAADNKQNDEKM----DEIRITIDRESGVISVWNNGRGIPIEIHSKEKIYVPELIFGHLL 135

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVT 162
               ++    KV+GG +G G  + N  S+   +     R+G  Y  ++ + +        
Sbjct: 136 TSSNYDDGQMKVTGGRNGFGAKLCNVFSTEFSIETCDSRQGKKYHQTWTDNMSKVGKAKI 195

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            S+ +D  T+VTF P    F +   + D      R +  L  + ++++    S  P    
Sbjct: 196 TSSKSDDYTKVTFKPDYQKFGMDGMDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPVR-N 254

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                 +       +R ++ +      +  S  +   ++    +DG  + V  F N+I  
Sbjct: 255 FKKYMEMYTKAIKKERGEEAVNDKSEIVTAS-PDPRWEVGFAVSDGSFQQV-SFVNSIAT 312

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG+H++ +   +        E      K   ++     R      ++  + +P F+SQ
Sbjct: 313 TSGGSHVNYIADQI---CNRLAEAVKKKNKQGATLKASQIRNHIFIFVNALIVNPAFTSQ 369

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE+L +   +   +  ++D     + +  +   I+      A  +       R      
Sbjct: 370 TKEQLTTKPSQFGSKCILDDDFYKKVLKTEVMTNILHFAEKKADQLLKKTDGGRRSRMNN 429

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LN
Sbjct: 430 PKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLN 483

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A  D++  + EI  + + +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ 
Sbjct: 484 VRDASVDQISKNAEIQNIKSFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLIN 543

Query: 520 FFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           F   Q PSL+      I    P+  + +G      K +         Q   E        
Sbjct: 544 FLQVQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKSKSFFTMPEYEQWKEENKNDLSWQ 603

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
                        D  +    L +     H     E  +I   F+ +   E       + 
Sbjct: 604 HKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQDHEAQLIDLAFSKKKADER-KEWLRQY 662

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                      + ++   IN   IL            V++G
Sbjct: 663 KPGTFLDHSTKQITYTDFINKELILFSMADNQRSIPSVVDG 703


>gi|311358941|gb|ADP94159.1| GyrB [Pseudomonas putida]
          Length = 381

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 218/382 (57%), Positives = 292/382 (76%), Gaps = 4/382 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV Y
Sbjct: 60  KPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+ +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS
Sbjct: 118 LNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           +LTR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 SLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 298 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLR 496
           GTLITALG GIG++ ++I+KLR
Sbjct: 358 GTLITALGCGIGREEYNIDKLR 379


>gi|296418623|ref|XP_002838930.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634913|emb|CAZ83121.1| unnamed protein product [Tuber melanosporum]
          Length = 1612

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 134/556 (24%), Positives = 237/556 (42%), Gaps = 57/556 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT----------DGES------------GLHHMIYEVL 49
           AD+ Q L  L+ + KRP  Y+G            D  +            GL+ +  E+L
Sbjct: 51  ADAYQKLTQLEHILKRPDTYVGSVERSERHMWVFDSGTTSMVWKPVTMVPGLYKIFDEIL 110

Query: 50  DNAIDESLEGY-ADIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +     D + VT++    + +V +NGRGIP ++H +E +   E+I   L    
Sbjct: 111 VNAADNKIRDPKMDTLKVTVDKATNTISVYNNGRGIPIEIHSKEKVYVPELIFGHLLTSS 170

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGI-LDNPLVVTGS 164
            ++    KV+GG +G G  + N  S+   +    K     Y+ ++ + +       +T +
Sbjct: 171 NYDDDEKKVTGGRNGYGAKLCNIFSTEFTVETGDKNTKQKYKQTWTDNMGKMGKAKITAN 230

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
              +  T++TF P    F +++ + D    ++ R+ +++     V++ L  +R       
Sbjct: 231 PKGEQFTKITFKPDLAKFHMEEMDDDFEALVKRRVYDMAASVKDVKVFLNGERIKLNFRK 290

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                            H++   +  + I     N   ++A   + G  + V  F N+I 
Sbjct: 291 YCEMY--------VNALHEEAGCEEKLVITWEVVNDRWEVAFAASGGNFQQV-SFVNSIA 341

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   L   +   ++K   S    ++      R  F   ++  + +P F+S
Sbjct: 342 TTSGGTHVNYIADQLCTHLQGALKKQNKSGAAVKNAQ---MRNHFFIFVNCLIENPAFTS 398

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS-MVRDAARRARDLTR 400
           QTKE+L +       +  ++D     + ++      I+      +         +R    
Sbjct: 399 QTKEQLTTRAGAFGSKCALSDTFIKNILKNTPVISNIIDYANMKADKQLKKTDGSRRSRI 458

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDS------AGGSAKQGRSRENQAILPLR 454
               L  A+  G       +D ++  L L EGDS      AG SA  GR R    + PLR
Sbjct: 459 NNPKLIDANRAG------TKDSQECVLILTEGDSARSLAVAGISAIDGRDR--FGVFPLR 510

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK+LNV  A  D+++ + EI  +   LG    +      +LRY  ++IMTD D DG+HI+
Sbjct: 511 GKLLNVRDASHDQIMKNAEIQNIKQILGLQHKKVYESRKELRYGHLMIMTDQDYDGSHIK 570

Query: 515 TLLLTFFFRQMPSLIH 530
            LL+ FF  Q PSL++
Sbjct: 571 GLLINFFETQFPSLLN 586


>gi|84310528|gb|ABC55412.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 187/392 (47%), Positives = 270/392 (68%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YK   GLHGV  SVVNALS+ L + + R+G I+  ++  G+    L + G   + TG
Sbjct: 1   GSGYKYPAGLHGVSASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALGTGIG+D F++ K R  K++
Sbjct: 360 SNNEVRSMITALGTGIGED-FNLEKARSPKVV 390


>gi|238477929|gb|ACR43658.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 374

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 224/377 (59%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKGVLDIA L GKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGVLDIAGLHGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|186462238|gb|ACC78596.1| DNA gyrase subunit B [Serratia sp. J49]
 gi|186462240|gb|ACC78597.1| DNA gyrase subunit B [Serratia sp. J437]
 gi|186462242|gb|ACC78598.1| DNA gyrase subunit B [Serratia sp. J440]
 gi|186462246|gb|ACC78600.1| DNA gyrase subunit B [Serratia sp. 8H1D]
 gi|186462248|gb|ACC78601.1| DNA gyrase subunit B [Serratia sp. 25N]
 gi|186462250|gb|ACC78602.1| DNA gyrase subunit B [Serratia sp. 136-1]
 gi|186462252|gb|ACC78603.1| DNA gyrase subunit B [Serratia sp. 136-2]
 gi|186462254|gb|ACC78604.1| DNA gyrase subunit B [Serratia sp. 226]
 gi|186462256|gb|ACC78605.1| DNA gyrase subunit B [Serratia sp. 242-1B]
          Length = 375

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 223/378 (58%), Positives = 290/378 (76%), Gaps = 4/378 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG ++E ++  G    PL V G   + TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFW 59

Query: 177 PSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F +  +F YD L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV Y
Sbjct: 60  PSYETFTNNVEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A
Sbjct: 118 LNKNKTPIHPNVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 MTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 238 VETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDIN 493
           TLITALG GIG+D ++ +
Sbjct: 358 TLITALGCGIGRDEYNPD 375


>gi|58258575|ref|XP_566700.1| DNA topoisomerase II [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134106673|ref|XP_778347.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50261050|gb|EAL23700.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222837|gb|AAW40881.1| DNA topoisomerase II, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1272

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 147/675 (21%), Positives = 257/675 (38%), Gaps = 63/675 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S+   +  Y     Q L   + V KRP  YIG  +  +                      
Sbjct: 104 SNKNASEVY-----QKLSQREHVLKRPDTYIGSVEAITQPMWILNPETKTMVHRPITFVP 158

Query: 40  GLHHMIYEVLDNAIDESLEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           G   +  E+L NA D  +     D I V ++ +  + +V +NGRGIP ++H +EG+   E
Sbjct: 159 GFLKIFDEILVNASDNKINDPTMDSIKVVIDREKNAISVYNNGRGIPVEMHTKEGVMIPE 218

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGI- 154
           +I   L AG  F+    K++GG +G G  + N  S    +    K     Y+  F N + 
Sbjct: 219 LIFGHLLAGSNFDDDQKKLTGGRNGYGAKLANIYSHEFIVETADKVNSKKYKQIFSNNMS 278

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLI 211
                 +T +   +  T++TF P  + F +   + DT   L  R+ +++     V++ L 
Sbjct: 279 KKGTPKITDNKKGEEWTKITFKPDLERFGMNGIDDDTNALLMKRVYDMAGTVKDVKVFLN 338

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+R                +  +  +      +  P  I     N   ++A   +DG  +
Sbjct: 339 DERIKVKNFKQYVEMYLNASTTATSEAAGGAAVTKPP-IIYEVANKRWEVAFALSDGEFK 397

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  FTN+I    GGTH+  + + L  ++   ++K   +   K        +      ++
Sbjct: 398 QV-SFTNSIATTKGGTHVDMIATQLANKLMDQIKKKNKAAPVK----PFQIKNHMWIFVN 452

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             + +P F SQTKE L         +  +++     + +       I+  VL+ +  +  
Sbjct: 453 ALIENPAFDSQTKENLTLKSSAFGSKCELSEEFIKKVAKTG-----IIDNVLNWARFKQD 507

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRE 446
               +    ++  +          +   R+ K   L L EGDSA      G A  GR   
Sbjct: 508 QILKKTDGTKRSRISGIVKLEDANNAGGRNSKNCTLILTEGDSAKALAVSGLAVVGRDE- 566

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
              + PLRGK+LNV  A  D+++ + EI  +   LG    QD    + LRY  ++IMTD 
Sbjct: 567 -YGVFPLRGKLLNVREAGHDQIVKNVEIQHIKQILGLKHNQDYATADSLRYGHLMIMTDQ 625

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           D DG+HI+ L++ F     PSL+      +    P+  + +GK           E++   
Sbjct: 626 DHDGSHIKGLIINFLDHFYPSLLRIPNFLVEFITPIVKVWKGKKEISFYTMPQYEEWKAQ 685

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
                      + +G  SK         +    K   D   +       Q     + +  
Sbjct: 686 N---------NNGRGWESKYYKGLGTSTSADAKKYFSDLDKHRLAFETMQPEDRQLIDMA 736

Query: 626 SDQEINVSLASKLAN 640
            +++        L  
Sbjct: 737 FNKKKADDRKEWLRQ 751


>gi|19912097|dbj|BAB88360.1| DNA gyrase subunit B [Cytophaga sp. I-377]
          Length = 391

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 185/392 (47%), Positives = 254/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  LK  + R+G I++  +  G    P+   G   + TGTEVTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLKATVHRDGKIWQQEYERGKTLYPVKTVGET-DITGTEVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIE 230
            P   IF     +NYDTL  R+REL++LN  + ++L DKR+ +        T     G+ 
Sbjct: 60  SPDKSIFQQTTEYNYDTLATRMRELAYLNKGITVTLTDKRNKDDEGNDISETFHSDQGLS 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLD  + P++Q  I ++G ++ I +++AM +ND Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVRYLDSTRTPVIQHVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S   K  K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTGTLKKYADNSGLLKNVKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+ I  L
Sbjct: 240 EVTSAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSIGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSF----DINKLRYH 498
           ++EI  + TALG  IG +      +++KLRYH
Sbjct: 360 NEEIKNMFTALGITIGTEEDPRALNLSKLRYH 391


>gi|238477944|gb|ACR43665.1| DNA gyrase subunit B [Aeromonas enteropelogenes]
          Length = 374

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 225/377 (59%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSS+TK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSRTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|190148862|gb|ACE63406.1| DNA gyrase B subunit [Pseudonocardia tetrahydrofuranoxydans]
          Length = 409

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 183/412 (44%), Positives = 259/412 (62%), Gaps = 18/412 (4%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SY VSGGLHGVGVSVVNALS+ L + I  +G  ++  +   +    L   G+A   T
Sbjct: 1   DSDSYAVSGGLHGVGVSVVNALSTRLDVEIDTDGFHWDQQYTRSVP-GTLNK-GAATRRT 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           GT +TF    DIF    +N +T++ RL+E++FLN  + I L D+R+              
Sbjct: 59  GTTITFWADPDIFETTVYNIETIRRRLQEMAFLNKGLTIVLRDERNGDSDEAEEPDAEGY 118

Query: 217 --EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
             + +E    Y  G+E FV++L++ K P+ +  +   G     ++++AM+WN GY E+V 
Sbjct: 119 VAKVKEHVFCYPNGLEDFVAHLNKTKDPIYKKLVAFTGEAPGHALEVAMQWNSGYTESVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N I   +GGTH  G R+ALT  +  Y       K+   ++ GDD REG  +++S+K+
Sbjct: 179 TFANTINTHEGGTHEEGFRAALTSTVNKYARDKKLLKEKDPALSGDDIREGLAAIVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EA+ IV K + ++  R AAR+
Sbjct: 239 KEPQFEGQTKTKLGNTEVKSFVQRISNEWLADWFERNPTEARTIVNKAVQSAQARLAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+L RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAILP+R
Sbjct: 299 ARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMTQAILPIR 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           GKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI++MTDA
Sbjct: 359 GKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHKIVLMTDA 409


>gi|317158221|ref|XP_001826919.2| DNA topoisomerase 2 [Aspergillus oryzae RIB40]
          Length = 1700

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 149/690 (21%), Positives = 261/690 (37%), Gaps = 55/690 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           ++  Q L  L+ + KRP  YIG  +  S                      GL+ +  E++
Sbjct: 125 SEKYQKLTQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDEIV 184

Query: 50  DNAIDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
            NA D     +     D I VT++ + G  +V +NGRGIP ++H +E I   E+I   L 
Sbjct: 185 VNAADNKQNDANM---DEIRVTISRETGEISVWNNGRGIPIEMHAKEKIYVPELIFGHLL 241

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVT 162
               ++    KV+GG +G G  + N  S+   +  +  R+   Y+ ++ + +        
Sbjct: 242 TSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQDSRQKKKYKQTWTSNMTKMGKAKI 301

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             A  D  T+VTF P    F +   + D      R +  L  + ++++    S  P    
Sbjct: 302 TDAKGDDYTKVTFKPDYAKFGMDGMDNDFEALVKRRVYDLAGTAKVAVKLNGSRVPVRNF 361

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y       +        P  +    I     +   ++    +DG  + V  F N+I  
Sbjct: 362 KKYMEMYTKAIRRERGDDGPAAKDE--IITCSPDPRWEVGFAVSDGSFQQV-SFVNSIAT 418

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++ +   +  ++   V+K   +     ++     R      ++ ++ +P F+SQ
Sbjct: 419 TSGGTHVNYIADQICSKLADQVKKKNKNG---ATLKPAQIRNHIFIFVNAQIVNPAFTSQ 475

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE+L +   +   +  + +     + +  + + I+      A  +       R      
Sbjct: 476 TKEQLTTKSSQFGSKCVLEEDFYKKILKTDVMSNILHFAQQKADQMLKKTDGGRRARMNN 535

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LN
Sbjct: 536 PKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLN 589

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A F+++  + EI  +   LG    ++  D   LRY  ++IMTD D DG+HI+ LL+ 
Sbjct: 590 VRDATFEQISKNAEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLIN 649

Query: 520 FFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           F   Q PSL+      I    P+  + +G      K+      +          E     
Sbjct: 650 FLQAQFPSLLRIPEFLIEFITPIIKVWKGD----PKNPTKQRSFFTMPEYEAWKEEHKHE 705

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN---VSLA 635
           +G   K                 +D   +  +    Q    G+      ++         
Sbjct: 706 RGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDNEVGLIELAFSKKKADERKEWL 765

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVK 665
            +           S+ S+   IN   IL  
Sbjct: 766 RQFKPGTFLDHSVSKISYTDFINKELILFS 795


>gi|317420204|emb|CBW30259.1| gyrase B subunit [Pseudoalteromonas paragorgicola]
          Length = 383

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 226/385 (58%), Positives = 294/385 (76%), Gaps = 6/385 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL ++REG ++E  +  G+ D PL V G +   TGTE+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGDSE-TTGTELRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV Y
Sbjct: 60  WPSAETFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIQAFVEY 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           L+R+K P+ +        R+   IS++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 LNRNKTPIHKGVFHFTHEREEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           SALTR + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 SALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VE  + +  + +L E+P +AKI+V K++DAS  R+AAR+AR++TRRKG +D+A LP
Sbjct: 239 VKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLP 298

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK LSS
Sbjct: 299 GKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKXLSS 358

Query: 472 QEIGTLITALGTGIGQDSFDINKLR 496
           QE+ TLITA   GIG+D ++  KLR
Sbjct: 359 QEVATLITAFRYGIGRDEYNPEKLR 383


>gi|238477950|gb|ACR43668.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 374

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 225/377 (59%), Positives = 285/377 (75%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPAIFSDTLFHYEILAKRLRELSFLNSGVFIRLQDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISGKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|198042694|gb|ACH81172.1| GyrB [Pseudoalteromonas sp. UST050418-015]
          Length = 385

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 226/387 (58%), Positives = 298/387 (77%), Gaps = 6/387 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  LKL I+R+G ++E  +  G+ D PL + G +   TGTE+ F PS + 
Sbjct: 1   GVGVSVVNALSEKLKLTIRRQGKLHEQFYTMGVPDAPLAIIGDSE-TTGTEIRFWPSGET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  DF++D L  RLRELSFLNS V I L D+R  E +     Y+GGI AFV YL+R+K 
Sbjct: 60  FTNLDFHFDILAKRLRELSFLNSGVSIILNDER-EENKTDHFKYEGGIRAFVEYLNRNKT 118

Query: 242 PLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           P+ +        R+   IS++++M+WND + EN+ CFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 119 PVHKGVFHFTHEREEDGISVEVSMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRSALTRT 178

Query: 300 ITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 179 LNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 238

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             + +  + +L E+P++AKI+V K++DA+  R+AAR+AR++TRRKG +D+A LPGKLADC
Sbjct: 239 QAMAEKFTEFLLENPMDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLAGLPGKLADC 298

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 299 QEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 358

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMT 504
           ITALG GIG+D ++  KLRYH+IIIMT
Sbjct: 359 ITALGCGIGRDEYNPEKLRYHRIIIMT 385


>gi|148971279|gb|ABR20177.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 432

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 208/436 (47%), Positives = 275/436 (63%), Gaps = 19/436 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++K YKV+GGLHGVGV VVNALSS L   +K+   +Y   F  GI  
Sbjct: 1   EVIMTVLHAGGKFDKKVYKVTGGLHGVGVHVVNALSSQLIAIVKKGETVYYEEFQKGIPS 60

Query: 157 NPLVVTG---------------SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
             L                        TGT + F    +IF    ++YDTL  R+R+L+F
Sbjct: 61  GVLKNVKREDYRKIPELNAIEIKMSEPTGTLIAFNADKEIFGDSKYSYDTLLSRMRDLAF 120

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           LN  V I + D+RS +     + YKGG+  FV YL      + +  I     RD+  I+ 
Sbjct: 121 LNPKVTIEIEDRRSGKS--EILSYKGGLTEFVKYLGEGYSHVNKDIIYNSEERDDSQIEY 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A ++     E +  F NNI   +GGTH +G RS L+R I  Y  KS    K   S+ G+D
Sbjct: 179 AFQYTTNTSEILESFVNNISTIEGGTHATGFRSGLSRAIQDYA-KSKNLIKGVESITGED 237

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+ ++M +P+F  QTK KL +SE+R  V+S V + +  ++E +P  A+IIVK+
Sbjct: 238 VREGLVAVIHVRMREPQFEGQTKSKLGNSEMRGTVQSVVENHMKQYMEGYPNIAEIIVKR 297

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           VL A+  R+A+R+AR+L RRK  L+   LPGKL+DCS  DP+K+E++LVEGDSAGGSAKQ
Sbjct: 298 VLAAAEAREASRKARELVRRKSALEGGGLPGKLSDCSSSDPEKTEIYLVEGDSAGGSAKQ 357

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
            R+R+ QA+LPLRGKILNVE+A   K LS+Q I  LITA+GT + +D  DI KLRY KII
Sbjct: 358 ARNRDFQAVLPLRGKILNVEKANDFKALSNQVIRDLITAMGTNVKEDL-DIKKLRYGKII 416

Query: 502 IMTDADVDGAHIRTLL 517
           +MTDADVDG+HIRTLL
Sbjct: 417 MMTDADVDGSHIRTLL 432


>gi|3021622|dbj|BAA25331.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 216/385 (56%), Positives = 290/385 (75%), Gaps = 4/385 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+          R++ + +++A++WND ++EN+LCFTN IPQ+DGGTHL G RS+L
Sbjct: 118 TNKTPVNSQVFHFSVQREDGVGVEVALQWNDSFNENLLCFTNIIPQRDGGTHLVGFRSSL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N   S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL+LVEGDSAGGSA Q  +R  QAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYLVEGDSAGGSANQANNRRTQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKII 501
           LITALG GIG++ ++I+KLRYH II
Sbjct: 358 LITALGCGIGREEYNIDKLRYHHII 382


>gi|32364162|gb|AAP80229.1| GyrB [Actinobacillus lignieresii]
          Length = 380

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 224/382 (58%), Positives = 282/382 (73%), Gaps = 6/382 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALSS L+L I+REG+++E  +  G  D PL V G   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTVIGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F PS DIF    +F Y  L  RLRELSFLNS V I LID+R  +       Y+GGI+A
Sbjct: 60  VRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIRLIDERDGKE--EHFKYEGGIKA 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           +V YL+  K  +  +P   Q  +    +   ++WND Y+ENV CFTNNIPQ+DGG HL+G
Sbjct: 118 YVEYLNEGKTHIHNTPFYFQPRKTVSVLKCQLQWNDSYNENVYCFTNNIPQRDGGKHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            R ALTR + +Y++ S   KK + ++   GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 178 FRGALTRALKNYMDNSGVVKKAESNIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR  VES +N+ L  +L E+P +AK IV K++DA+  R+A R+AR++TRRKG LD+  
Sbjct: 238 SEVRGAVESSMNEALQEYLAENPDDAKNIVTKIIDAARAREAGRKAREMTRRKGALDLGG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 298 LPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKML 357

Query: 470 SSQEIGTLITALGTGIGQDSFD 491
           SSQE+ TLITALGTGIG+D ++
Sbjct: 358 SSQEVATLITALGTGIGRDDYN 379


>gi|221132667|ref|XP_002158728.1| PREDICTED: similar to topoisomerase (DNA) II alpha, partial [Hydra
           magnipapillata]
          Length = 1323

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 123/624 (19%), Positives = 238/624 (38%), Gaps = 57/624 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDT----------DGES------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG T          D ES            GL+ +  E++ NA
Sbjct: 20  YQKKSQLEHIILRPDSYIGSTEPCQQSMWVWDDESSSIISKNITFSPGLYKIFDEIIVNA 79

Query: 53  IDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I V ++++    +V +NGRGIP ++HKE+ +    +I   L     ++
Sbjct: 80  ADNKQRDVKMNTIKVNIDVEKNIISVWNNGRGIPVEMHKEQNVYVPTLIFGHLLTSSNYD 139

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
               KV GG +G G  + N  S+   +    +G  ++  + N +                
Sbjct: 140 DTEKKVVGGRNGFGAKLCNIFSTKFSIETGCDGKKFKQVWKNNMSKAEPEHIVDYSGSDF 199

Query: 171 TEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T VTF P    F +   + D +   + R  +++ +   V + L  +   + +  +     
Sbjct: 200 TCVTFSPDLPKFKMDKLDNDFVSLLKRRAYDMAGVCRGVSVYLNGE---KLKVKSFKDYV 256

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+    +    + +      I       N   ++ +  ++        F N+I    GGT
Sbjct: 257 GLYVKTACKTENGEEQGPKIIH---EIVNPRWEICVTVSES-GFQHSSFVNSIATTKGGT 312

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++ +   L  ++ + V+K  G       +     +      ++  + +P F SQTKE +
Sbjct: 313 HVTYIVDQLCDKLIATVKKKTGKGGFD--IKPFHVKSHLWVFVNTLIENPTFDSQTKENM 370

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
              +        ++D     +++  +   I+      +    +A    +  + +   L  
Sbjct: 371 TLRKSAFGSTCELSDKYIKMVQDTGVLENILSWVKFKS----EAQLNKKGSSSKHSRLKG 426

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERAR 464
                   D   +  +   L + EGDSA      G S   R+   + PLRGK+LNV  A 
Sbjct: 427 VPKLEDANDAGTKRSRDCTLIVTEGDSAKALVMAGLSVVGRDKYGVFPLRGKLLNVRDAS 486

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKL---RYHKIIIMTDADVDGAHIRTLLLTFF 521
             +++++ EIG+L+  +G   G+   + N +   RY  ++IM D D DG+HI+ L++ F 
Sbjct: 487 HSQIMNNAEIGSLVKIIGLQFGKKYENENDMKTLRYGHLMIMADQDQDGSHIKGLVINFI 546

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKS-----------LQYVKDEESLEDYLINQSLSE 570
               P L+   FL     P+   ++ K             ++ +   + + + I      
Sbjct: 547 HANWPGLLKIPFLEEFITPIIKASKSKKETISFFSIPEFEEWKEATPNYKSWHIKYYKGL 606

Query: 571 EIELFCDSKGVISKNDLRNFIDDA 594
                 + K   S       + + 
Sbjct: 607 GSSTSIEGKEYFSDMQRHRIVFEY 630


>gi|317420218|emb|CBW30266.1| gyrase subunit B [Psychrobacter immobilis]
          Length = 383

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 222/386 (57%), Positives = 287/386 (74%), Gaps = 3/386 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L++ I REG  Y  ++ +G+ D  +       + TGT++ F
Sbjct: 1   VSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADIQQ-MEPTDKTGTQIRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PSSD+F+   F YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FVSY
Sbjct: 60  YPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++  K  + +    +    D IS+++A++W D Y+E V CFTNNIPQ+DGGTHLSG RSA
Sbjct: 118 INAGKDGINEVFHFVSEQDDGISVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y+++    KK+K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 LTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES ++D  + +L+E+P   K I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLA
Sbjct: 238 VESAMHDKFNDYLQENPSAGKAIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+G
Sbjct: 298 DCQEKDPAFSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVG 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKII 501
            LITALG GIG D ++ +K+RYHKII
Sbjct: 358 NLITALGCGIGPDEYNPDKVRYHKII 383


>gi|194477391|gb|ACF74792.1| DNA gyrase subunit B [Halorubrum lipolyticum]
          Length = 407

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 198/406 (48%), Positives = 273/406 (67%), Gaps = 9/406 (2%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVT--GSAGNDT 169
           SY+VSGGLHGVGVSVVNALS  L++ +KR+G +Y   F  G               G +T
Sbjct: 2   SYQVSGGLHGVGVSVVNALSERLEVEVKRDGGVYRHEFARGEPAEDGFERVRDMDDGEET 61

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-----MF 224
           GT + F P  ++F    F + TL +RLREL+FLNS V +SL+D+R  +  + T       
Sbjct: 62  GTYIRFWPDDEVFETTAFEFSTLANRLRELAFLNSGVAVSLVDERGADADDDTGDEETFR 121

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GGI  FV YL+  + P+ +  I  +   D+I +++AM+  +    +V  F NNI  ++
Sbjct: 122 YEGGIREFVGYLNETRTPIHEEVIYFEDEADDIHVEVAMQATEELQGSVHAFANNINTRE 181

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G ++ALTR +  Y  +         ++ G+D REG T+V+S+K PDP+F  QTK
Sbjct: 182 GGTHLTGFKTALTRTVNDYANEHGLVDDLDANLKGEDVREGLTAVISVKHPDPQFEGQTK 241

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEVR +VES  ++ L  + EE+P  A+ +V K  +A+  R AA++A +LTRRK  
Sbjct: 242 TKLGNSEVRGIVESATHEKLGTFFEENPDTARKVVHKAAEAARARKAAKKAEELTRRKSA 301

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+  +LPGKLADC  RDP ++ELF+VEGDSAGGSAKQGR+RENQAILPL+GKILNVE+ R
Sbjct: 302 LESTALPGKLADCQTRDPTEAELFVVEGDSAGGSAKQGRNRENQAILPLKGKILNVEKHR 361

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            D++L + EI  LITA+G GIG++ FDI+ +RY+KIIIMTDADVDG
Sbjct: 362 LDRILENDEIRALITAIGAGIGEE-FDIDDVRYNKIIIMTDADVDG 406


>gi|324331802|gb|ADY38687.1| DNA gyrase subunit B [Ignatzschineria sp. NML 100429]
          Length = 376

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 218/379 (57%), Positives = 281/379 (74%), Gaps = 3/379 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS LKL I + G I+E  +  G  D PL   G   +  GT V F PS D+
Sbjct: 1   GVGVSVVNALSSKLKLTIYKHGKIHEQEYTVGEPDYPLREIGET-DKNGTTVYFKPSKDV 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  DF +D L  RLREL+FLNS ++I L D+R+   RE    Y+GGI+A+V  +++++ 
Sbjct: 60  FTDIDFEFDILFKRLRELAFLNSGIRIVLKDERTD--REEIFEYEGGIKAYVELINKNRN 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            +          RDNI++++A +W DGY E+V C+TNNIPQ DGGTHL+G R+A+TR + 
Sbjct: 118 EIHPDIFYCDCQRDNINVEIAFQWTDGYQESVFCYTNNIPQSDGGTHLAGFRAAMTRTLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y++     KK K +  GDD REG T+++S+K+P P+FSSQTKEKLVSSEVR VV+S + 
Sbjct: 178 RYMQDEGLLKKVKVATTGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPVVDSVLA 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  +L EHP +AK I  K++DA+M R+AAR+AR+ TRRK  LDIA LPGKLADC E+D
Sbjct: 238 ERLEQFLLEHPDDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P +SELF+VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFD+M+SS EIGTLITAL
Sbjct: 298 PAQSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMISSAEIGTLITAL 357

Query: 482 GTGIGQDSFDINKLRYHKI 500
           G GIG+D FD +KLRYH++
Sbjct: 358 GCGIGRDEFDPDKLRYHRM 376


>gi|83415014|dbj|BAE53771.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 400

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 195/401 (48%), Positives = 261/401 (65%), Gaps = 10/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           + SYKVSGGLHGVGVS VNALS++L+  ++R+G IY   F  G + N L + G   ND G
Sbjct: 1   KNSYKVSGGLHGVGVSCVNALSAYLRAEVRRDGKIYAQEFSCGKVTNELTIIGET-NDRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYK 226
           T +TF P S IF V ++ YD L  RLRELSFLN+ V++ L DKR    +   +    +  
Sbjct: 60  TTITFKPDSSIFIVTEYKYDILASRLRELSFLNAGVRLELTDKRVSFVNGTFKHEIFYSS 119

Query: 227 GGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            G+  FV ++D  K+PL+    I I   +  I +++AM +N  Y+E++  + NNI   + 
Sbjct: 120 EGLSEFVRFIDSAKQPLIGNDIIHIITEKQGIPVEIAMTYNTSYNESISSYVNNINTIEH 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++G R ALTR +  Y   S   +K K  +  DD REG T+V+SIK+ +P+F  QTK 
Sbjct: 180 GTHVAGFRRALTRTLKKYAVDSKLLEKIKIEISPDDFREGLTAVISIKVQEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++E    V+  V   LS +LEEHP EAK IV KV+ A+M R AAR AR++ +RK  L
Sbjct: 240 KLGNNEAIGAVDQAVGTALSVYLEEHPKEAKTIVDKVVLAAMARHAARNAREMVQRKSPL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCS+R+P+K E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A  
Sbjct: 300 AGGGLPGKLADCSDRNPEKCEIFLVEGDSAGGTAKQGRERKYQAILPLRGKILNVEKAMP 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIII 502
            K+L + EI  + TALG  IG        +I+KLRYHK++I
Sbjct: 360 YKVLENSEIRNIFTALGVTIGTTEDSKGLNIDKLRYHKVVI 400


>gi|39975823|ref|XP_369302.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
 gi|145011529|gb|EDJ96185.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
          Length = 1680

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 150/722 (20%), Positives = 272/722 (37%), Gaps = 68/722 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           +      +Y     Q L  L+ + KRP  YIG  +                         
Sbjct: 124 TKKTATETY-----QKLTQLEHIIKRPDTYIGSVERTETKMWTFNKQTGLVENRIVAFVP 178

Query: 40  GLHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D S        + VT++ + G  +V +NG+GIP ++H++E +   E
Sbjct: 179 GLYKIFDEILVNAADNSQRDKTMTYLKVTVDRESGQISVENNGKGIPVEMHEKEKVYIPE 238

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL 155
           +I   L  G  ++ K  K  GG +G G  + N  S+   L  +    G  Y+ ++ N + 
Sbjct: 239 LIFGHLLTGSNYDDKELKTVGGRNGYGAKLTNIFSTEFILEAQDSSNGKRYKQTWTNNMS 298

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ----HRLREL-SFLNSSVQISL 210
           +       S        VTF P    F + D   D L+     R+ ++   L+S+V++ L
Sbjct: 299 NCGKAKITSNKTQDFVRVTFTPDYARFGMPDGIDDDLEGLLYRRVYDMAGTLDSNVKVHL 358

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
             ++     +          A         +    + +  +  + +    +    +DG  
Sbjct: 359 NGEQLKVNFKKYCEMYAKSIAQERDDVPEGEDSKVAEVIFEDPKAHKRWKVGFTVSDGQF 418

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           + V  F N+I    GGTH++ +   +T  + + + K         S+   + +      +
Sbjct: 419 QQV-SFVNSIATTQGGTHVNYIADQITAALLADLNKKK----KGHSLKQHNIKNYIFIFV 473

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           +  + +P F+SQTKE+L +   +   +  + +     + +      II      A  +  
Sbjct: 474 TCLIENPAFTSQTKEQLTTKASQFGSKCPLTEPFLKKVRQTEAIENIIHFAEKKADKMLS 533

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SREN 447
            +   +        L  A+L G       +   +  L L EGDSA G A  GR     + 
Sbjct: 534 KSDGNKRSRISNEKLVDANLAG------TKHGHECTLVLTEGDSARGLAVAGRAILDPDR 587

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
             + PLRGK+LNV  A  D++L ++EI  +   LG    Q   D   LRY  ++IM D D
Sbjct: 588 IGVFPLRGKMLNVRDASIDQILKNKEIQNIKQFLGLKHKQVYTDTKGLRYGHLMIMADQD 647

Query: 508 VDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGI------TRGKSLQYVKDEESLE 560
            DG+HI+ LL+ F   Q PSL+    F      P+  +       +   L+   +    E
Sbjct: 648 HDGSHIKGLLINFLQVQFPSLLQIPDFFQEFITPVVKVWQGSNPKKPTKLKTFFNMPQYE 707

Query: 561 DYLI--NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF-IEQAV 617
           ++       +      +    G  S  D + +  D   +D  +K F+        + +  
Sbjct: 708 EWKEAHKHEIRRWDYKYLKGLGSSSNEDAQVYFTD---LDLHLKQFHTMKPDEIELFELA 764

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
            S     +   +                    + ++   +N   IL            ++
Sbjct: 765 FS-----KKKADARKEWLGNFIPGTFLDHSTKQITYSDFVNKELILFSMADNMRSIPSMI 819

Query: 678 EG 679
           +G
Sbjct: 820 DG 821


>gi|86169579|gb|ABC87029.1| DNA gyrase subunit B [Weissella hellenica]
          Length = 394

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 187/395 (47%), Positives = 269/395 (68%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGND 168
              YKVSGGLHGVG SVVNALS+ L + + R+G  Y M F  G +   +       A   
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTSLDVLVVRDGKGYAMDFERGHVKTSMHEVSAEDAPVS 60

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GT V F P  DIF     F+Y TL +R+REL+FLN  ++IS+ D R  EP   +  Y+G
Sbjct: 61  RGTIVRFAPDPDIFRETTVFDYKTLMNRVRELAFLNKGLRISITDMRLNEPIVESFHYEG 120

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+ +V++L+ +K  +   PI ++G  ++I++++++++ D +H N+L FTNNI   +GGT
Sbjct: 121 GIKEYVNFLNVNKDVIFNEPIYVEGMENDIAVEVSLQYTDDFHSNLLSFTNNIHTYEGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G +SALTR I  Y  +    K++  ++ GDD REG T+++S+K PDP+F  QTK KL
Sbjct: 181 HETGFKSALTRVINDYARRIKILKENDDTLSGDDVREGLTAIVSVKHPDPQFEGQTKTKL 240

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +S+ R+ V+   +D  + ++ E+P  AK +V+K + A   R AA+RAR+ TR+K  L+I
Sbjct: 241 GNSDARTAVDRMFSDTFARFMMENPKIAKQVVEKGILAGKARMAAKRAREATRKKSGLEI 300

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A+LPGKLAD + +DPK SELF+VEGDSAGGSAKQGR R  QAILP+RGKILNVE+A  +K
Sbjct: 301 ANLPGKLADNTSKDPKISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASMEK 360

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +L+++EI +L TA+GTG G + FD+ K +YHK+II
Sbjct: 361 ILANEEIRSLFTAMGTGFGNE-FDVTKAKYHKLII 394


>gi|312214411|emb|CBX94403.1| similar to DNA topoisomerase II [Leptosphaeria maculans]
          Length = 1716

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 146/707 (20%), Positives = 279/707 (39%), Gaps = 57/707 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +D  Q+L  L+ + KRP  YIG  + ++                      GL+ +  E+L
Sbjct: 143 SDKYQMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSSTESMEFRDVTYVPGLYKIFDEIL 202

Query: 50  DNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D          I VTL+ + G  ++ ++G+GIP ++HKE GI   E+I   L    
Sbjct: 203 VNAADNKQNDKNMSEIRVTLDRETGEISIKNDGKGIPIEIHKEHGIYVPEMIFGHLLTSS 262

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILD-NPLVVTGS 164
            ++    KV+GG +G G  + N  S+   +     ++   Y+ ++ + +       +   
Sbjct: 263 NYDDNQQKVTGGRNGYGAKLCNVFSTEFTVETVDSKQKKKYKQTWTDNMSKMGKAKIVDF 322

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
             +D  T+V++    D F +   + D    ++ R  +++     V++ L   R       
Sbjct: 323 KSSDDYTKVSWKADYDRFGMTGIDDDFEAMVKRRTYDIAGTLRGVKVYLNGDRVKVTSFA 382

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                  +       ++ +    +    I   + +   D+    +DG    V  F N+I 
Sbjct: 383 KYME---MYTKSIAREQGRSEDDKEANVIITDKHD-RWDIGFAVSDGAFNQV-SFVNSIA 437

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   +  ++ + V K   +      +     +      ++  + +P F+S
Sbjct: 438 TTSGGTHVNYIAEQIVDRLLAIVNKKNKAAVK---LKPAQIKNHIFLFVNCSIVNPAFTS 494

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE+L +   +   +  ++D     +E+       +++ ++  +  + A +  +     
Sbjct: 495 QTKEQLTTKSSQFGSKPVLSDKFLKAIEKTD-----VIQNIMHFAQ-QKADQMMKKTDGN 548

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKIL 458
           K      +          +D     L L EG+SA   A  GR   +++   + PLRGK+L
Sbjct: 549 KRNRISNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLL 608

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDS--FDINKLRYHKIIIMTDADVDGAHIRTL 516
           NV  A  D+++ + EI  +   +G    ++    D+  LRY  ++IMTD D DG+HI+ L
Sbjct: 609 NVRDATVDQIMKNAEIQNIKKFMGLQHKKEYTVSDMKSLRYGHLMIMTDQDHDGSHIKGL 668

Query: 517 LLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           L+ F   Q PSL+   GFL     P+  + +G      K+  SL+ +       E  E  
Sbjct: 669 LINFLQCQFPSLLKIPGFLLEFITPIVKVWKGD----PKNPRSLKSFFSMPEYEEWKEQH 724

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
              KG   K        D        KD   +     + +     +      ++   +  
Sbjct: 725 KHEKGWEHKYFKGLGTSDIPDAQIYFKDLDTHMKSFQVMREEEEKLIELAFSKKKADARK 784

Query: 636 SKLANRL---NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
             L + +   +      E S+   +N   IL            V++G
Sbjct: 785 EWLRDFVPGQHLDLTTQEISYDDFVNKELILFSMADNLRSIPSVIDG 831


>gi|4996798|dbj|BAA78444.1| subunit B protein of DNA gyrase [bacterium rM5]
          Length = 322

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 157/326 (48%), Positives = 209/326 (64%), Gaps = 32/326 (9%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHK 89
           T   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V+DNGRGIPT     D H 
Sbjct: 1   TSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKH- 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E   SA+E+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++REG ++ + 
Sbjct: 60  EPKRSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRREGKVHVLE 119

Query: 150 FIN------------GILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRL 196
           F              G+  +P+ +TG      GTEV FLP +DIF    DF+Y+ L  RL
Sbjct: 120 FSRGFVQNRLIEDVGGVEVSPMRITGDTE-KRGTEVHFLPDTDIFKENSDFHYEILAKRL 178

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-- 254
           RELSFLN+ V+I L D+RS +         GG+  FV ++++ K  L  +P    G R  
Sbjct: 179 RELSFLNNGVRIRLKDERSGKE--DDFSGAGGVRGFVEFINKGKTVLHPNPFYASGERAS 236

Query: 255 --------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                    +I +++AM+WN GY E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+++
Sbjct: 237 ETYGGIPDTHIGVEVAMQWNSGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDE 296

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSI 332
              +KK K  V GDD REG   VLS+
Sbjct: 297 HDFAKKAKVEVTGDDMREGLCCVLSV 322


>gi|317420222|emb|CBW30268.1| gyrase subunit B [Psychrobacter cibarius]
          Length = 383

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 222/386 (57%), Positives = 287/386 (74%), Gaps = 3/386 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L++ I REG  Y  ++ +G+ D  +       + TGT++ F
Sbjct: 1   VSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADIQQ-MEPTDKTGTQIRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PSSD+F+   F YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FVSY
Sbjct: 60  YPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++  K  + +    +    D IS+++A++W D Y+E V CFTNNIPQ+DGGTHLSG RSA
Sbjct: 118 INAGKDGINEVFHFVSEQDDGISVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y+++    KK+K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 LTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES ++D  + +L+E+P   K I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLA
Sbjct: 238 VESAMHDKFNDYLQENPSAGKAIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+G
Sbjct: 298 DCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVG 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKII 501
            LITALG GIG D ++ +K+RYHKII
Sbjct: 358 NLITALGCGIGPDEYNPDKVRYHKII 383


>gi|254444126|ref|ZP_05057602.1| DNA topoisomerase II N-terminal domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198258434|gb|EDY82742.1| DNA topoisomerase II N-terminal domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 591

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 170/599 (28%), Positives = 265/599 (44%), Gaps = 55/599 (9%)

Query: 30  MYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           MYIG     S    G++ +I E++DN+IDE   G+   I +T+  D + TV D GRGIP 
Sbjct: 1   MYIGKLGDGSSPDDGIYVLIKEIIDNSIDEHTSGHGKRIDITI-QDETVTVRDFGRGIPL 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
                  +    VI T    G K++ ++++ S GL+GVG   VN LS        REG  
Sbjct: 60  GKV----VDCVSVINT----GAKYDSETFQKSVGLNGVGTKAVNFLSESFVASAYREGKT 111

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
            + +F +G L              GT V F+P   IF    +  + ++  L   ++LN+ 
Sbjct: 112 KKATFEHGELAKESRQV-KTDEKNGTYVEFVPDHSIFKNFKYRLEFVEAMLWNYAYLNTG 170

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           + +SL  +            + G++  +         ++   I ++G      I++A+  
Sbjct: 171 LTLSLNGET--------FKSENGLKDLLQDNLSG--DILYPIIHLKGED----IEVAITH 216

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
              Y E+   F N      GGTH +  R A+ + I  +  K+             D R  
Sbjct: 217 GTHYGEDYFSFVNGQHTTMGGTHQAAFREAIVKTIREFFNKN---------YDPADVRTS 267

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVS-------SEVRSVVESFVNDGLSAWLEEHPLEAKII 378
             S +S+++ +P F SQTK KL S         +R+ V SF+   L   L  +P  AK I
Sbjct: 268 IVSAISVRVQEPVFESQTKTKLGSQNIAPKGPSIRNFVNSFIKKELDDHLHRYPETAKAI 327

Query: 379 VKKVLDASMVRDAARRARDLTRRKG-----VLDIASLPGKLADCSERDPKKSELFLVEGD 433
            +K++ +   R      R L R K                  +   +    + LF+VEGD
Sbjct: 328 QQKIVSSEKERKELSGIRKLAREKAKKVNLHNKKLRDCRAHFNSRHKQADDATLFIVEGD 387

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGS  + R    QA+  L+GK LN        +  + E   L +AL    G     ++
Sbjct: 388 SAGGSITKTRDVNTQAVFSLKGKPLNAFGLSKKIVYQNDEFNCLQSALDIEDG-----LD 442

Query: 494 KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYV 553
            LRY+K++I TDADVDG HIR LLLTFF +  P L+  G LYI++ PL+ +   K   Y 
Sbjct: 443 TLRYNKVVIATDADVDGMHIRMLLLTFFLQFFPDLVRQGHLYILQTPLFRVRNKKKTIYC 502

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
            +++  +  L N   + EI  F       S ++   FI   +K++ +      N D+  
Sbjct: 503 YNQKEKDRALKNLGKAAEITRFKGLGEA-SPDEFATFIGPDMKLEHVTMAHLHNIDELL 560


>gi|2196828|gb|AAB80831.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 220/409 (53%), Positives = 295/409 (72%), Gaps = 4/409 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L   GKF   S  V  G   VGVSVVNALS  L+L I+R+G +YE  + +G   
Sbjct: 1   EVIMTVLRPLGKFEDPSKDVYVGWPRVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS + F+  +F+Y+ L  R+RELSFLNS V I LID+R  
Sbjct: 61  EPIKEIGEAT-KTGTEIRFWPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI+AFV YL+R+K P+ +        R++ I++++AM+WNDG+ E++ C
Sbjct: 120 K--YEFFHYEGGIKAFVEYLNRNKTPVNKDVFHFSQEREDGITVEVAMQWNDGFQESIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+  VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           KI NVE+ARFDKML  QE+ T ITALG GIG       + R  +++IMT
Sbjct: 358 KIFNVEKARFDKMLFFQEVATFITALGCGIGGVVLTAVQTRGKEVVIMT 406


>gi|9971295|dbj|BAB12465.1| DNA gyrase B subunit [Pseudospirillum japonicum]
          Length = 381

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 220/383 (57%), Positives = 285/383 (74%), Gaps = 3/383 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ L L I R G ++E S+ +G+   PL V G+    +G+++ F
Sbjct: 1   VSGGLHGVGVSVVNALSAELDLTIWRAGQVFEQSYQHGVPQYPLKVVGTTK-KSGSQIRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS   F+  +F+YD L  RLRELSFLNS V I L D+RS   R+    Y+GG++AF+ +
Sbjct: 60  KPSPQTFTNIEFHYDILAKRLRELSFLNSGVGIYLQDERSG--RKEHFCYQGGLKAFIEH 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+R+K  L           D I +++A++WNDG+ EN+ C+TNNIPQ+DGGTHLSG R+A
Sbjct: 118 LNRNKNHLNAVFHFSCERDDGIGVEVALQWNDGFAENIFCYTNNIPQRDGGTHLSGFRAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR +  Y+E+    KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 LTRSLNQYIEQEGLLKKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  +      +L E+P E+K IV K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLA
Sbjct: 238 VEQEMARCFGEYLLENPKESKAIVDKMLDAARAREAARKAREMTRRKGALDIAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SE++LVEGDSAGG AKQGR R  QAILPL+GKILNVE+ARFD+MLSS EIG
Sbjct: 298 DCQEKDPALSEIYLVEGDSAGGFAKQGRDRRTQAILPLKGKILNVEKARFDRMLSSAEIG 357

Query: 476 TLITALGTGIGQDSFDINKLRYH 498
           TLITALG GIG++ F+ +KLRYH
Sbjct: 358 TLITALGCGIGREEFNPDKLRYH 380


>gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum]
 gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum]
          Length = 1537

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 141/748 (18%), Positives = 276/748 (36%), Gaps = 83/748 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +  +                      GL+ +  E+L NA
Sbjct: 24  YQKKSQLEHILLRPDTYIGSVEPVTESMWVYDTEEDSMVQREITYVPGLYKIFDEILVNA 83

Query: 53  IDESLEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        D I + +N +    +V +NG+GIP   HK+E +    +I   L     +N
Sbjct: 84  ADNKQRDQTMDTIKIDINKEENIISVWNNGKGIPVVEHKDEKMYVPTMIFGHLLTSSNYN 143

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRI----KREGNIYEMSFINGILDNPLVVTGSAG 166
            +  KV+GG +G G  + N  S+   +       R    ++ ++ + +  +         
Sbjct: 144 DEEAKVTGGRNGFGAKLCNIFSNKFTVETASREYR--KAFKQTWADNMAKSSDPSIKEVK 201

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
               T+V+F P    F +   + D    +  R  +++     V++ L  K         +
Sbjct: 202 TTDYTKVSFSPDLAKFRMTCLDKDIVDLMSRRAYDVAASTRGVRVYLNGK---------L 252

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
                 + +V+   + K+  + +P+++         ++A+  +D   + V  F N+I   
Sbjct: 253 LPIKTFQDYVNLYIKGKEDEIGNPLKLVYENAGQRWEVAVTMSDTGFKQV-SFVNSIATT 311

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG H+  +   + +Q+T  V+K     K    +     +      ++  + +P F SQT
Sbjct: 312 KGGRHVDYITDMIVKQLTDIVKKRN---KGGMDLKNHQVKNHLWVFVNCLIVNPTFDSQT 368

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE +         +  +++     + +       IV+ VL  +  +   +  +   +++ 
Sbjct: 369 KEHMTLQVKNFGSKCTLSEKFVTGVSKCG-----IVEAVLSWAKFKAQTQLQKQSGKKQS 423

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKIL 458
            L          D   R+     L L EGDSA      G    GR +    + PLRGK+L
Sbjct: 424 KLKGVPKLEDANDAGTRNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLL 481

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRT 515
           NV  A   +++ + EI  ++  +G    +    +     LRY +++IMTD D DG+HI+ 
Sbjct: 482 NVREASHKQIMDNAEISNIVKIVGLQYKKKYETMEDLKSLRYGRLMIMTDQDQDGSHIKG 541

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIE 573
           L++ F     P+L+   FL     P+   T+GK           E++          +I+
Sbjct: 542 LIINFIHHNWPTLLKLPFLEEFITPIVKATKGKDETSFYSLPEFEEWKDATRNWNKYKIK 601

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +       SK              +  ++   +      E A           +++  S
Sbjct: 602 YYKGLGTSTSKE-----------AKEYFQNMKRHRILFKYEDAGDDEHIEMAFSKKMVDS 650

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
               L N +     + E          + L ++  R V  +  +    +       +R  
Sbjct: 651 RKEWLTNWMVESKRRKEAGL-----AEEYLYEKNTRTVTYKDFVNKELVLFSNMDNERSI 705

Query: 694 SNRIEENYLTILSL----ICNGDKIKIT 717
           ++ ++        +    I   DK +I 
Sbjct: 706 ASVVDGLKPGSRKVLFTCIKRNDKREIK 733


>gi|194477388|gb|ACF74791.1| DNA gyrase subunit B [Halorubrum coriense]
          Length = 398

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 202/401 (50%), Positives = 271/401 (67%), Gaps = 6/401 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGSAGND--TGTE 172
           VSGGLHGVGVSVVNALS  L++ + R+G ++   F  G            AG D  TGTE
Sbjct: 1   VSGGLHGVGVSVVNALSERLEVEVTRDGGVFRHRFARGEPAEDGFERVRDAGPDESTGTE 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P  +IF   DF   TL +RLREL+FLNS V+I L+D R       T  Y GGI  F
Sbjct: 61  IRFWPDEEIFETTDFQTSTLANRLRELAFLNSGVEIRLVDDRDDTA--ETFRYDGGIREF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+  + P+ +  I  +G  D + +++AM+  +    +V  F NNI  ++GGTHL+G 
Sbjct: 119 VEYLNETRSPIHEDVIYFEGESDGVHVEVAMQATEELQGSVHAFANNINTREGGTHLTGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ALTR +  Y  +         ++ G+D REG T+V+S+K PDP+F  QTK KL +SEV
Sbjct: 179 KTALTRTVNDYANEHGLVDDLDANLKGEDVREGLTAVVSVKHPDPQFEGQTKTKLGNSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R VVES  ++ L  + EE+P  A+ +V K  +A+  R AA++A +LTRRK  L+  +LPG
Sbjct: 239 RGVVESATHEKLGTFFEENPDTAEKVVHKAAEAARARKAAKKAEELTRRKSALESTALPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC  RDP+++ELF+VEGDSAGGSAKQGR+RENQAILPL+GKILNVE+ R D++L + 
Sbjct: 299 KLADCQTRDPEEAELFVVEGDSAGGSAKQGRNRENQAILPLKGKILNVEKHRLDRILEND 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           EI  LITA+G GIG++ FDI+ +RY+KII+MTDADVDGAHI
Sbjct: 359 EIRALITAIGAGIGEE-FDIDDVRYNKIILMTDADVDGAHI 398


>gi|110612639|gb|ABG78282.1| GyrB [uncultured bacterium]
          Length = 406

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 185/411 (45%), Positives = 268/411 (65%), Gaps = 7/411 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  +YKVSGGLHGVGVSVVNALS  L L I ++GN +   +  GI + PL         
Sbjct: 1   FDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQVYHKGIPEAPLA-ITGTSET 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F P   I     F++D L HR REL +LN ++ I  I +     RE     +GG
Sbjct: 60  TGTSIRFYPDLTIMETDAFSFDVLAHRFRELGYLNPALTI--ILREEETLREEVFHDEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGT 287
           I +F+ +++ +K+ +       +   +  + +++ ++ D    E +L + NNIP ++GGT
Sbjct: 118 IRSFLLFVNENKRTIHDPLTFRKSFDNGSTFEISFQYQDTTDAETLLSYVNNIPTREGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+ G R+ALTR +  +++    +K ++    G+D REG ++++SIK+P+P+F  QTK KL
Sbjct: 178 HVRGFRAALTRVVNRFIKDKNLNKGEEVR--GEDIREGLSAIVSIKIPNPQFEGQTKAKL 235

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            SS V   +E+F+ + L    E+    A+ I  K + ++  R+AAR+AR+LT+RK VL+ 
Sbjct: 236 GSSWVSGAMETFLAEALEDAFEKQGTVARAIADKAILSAQAREAARKARELTKRKNVLEG 295

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FD 466
           ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+++  +
Sbjct: 296 SNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSKGVE 355

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIRTLL
Sbjct: 356 KFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGSHIRTLL 406


>gi|6644322|gb|AAF21007.1|AF208256_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 228/383 (59%), Positives = 290/383 (75%), Gaps = 3/383 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGV VSVVNALS  L L I+R G++YE ++  G    PL   G++   TGTEV F 
Sbjct: 1   SGGLHGVCVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGNST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   FNY+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFNYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ +GGTHL G R+AL
Sbjct: 118 NQNKTPMHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQPNGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+EK   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMEKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHK 499
           LITALG GIG+D ++ +KLR  +
Sbjct: 358 LITALGCGIGRDEYNPDKLRVSQ 380


>gi|269849455|gb|ACZ49796.1| DNA gyrase subunit B [Aeromonas sobria]
          Length = 374

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 220/377 (58%), Positives = 284/377 (75%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG+SVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGISVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSS-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL
Sbjct: 60  PSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLHDER--DGREVHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEHDGIGVEVAMQWNDAYQEGVCCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLGEFLLENPSDAKIVVDKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILN E+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNAEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|161085584|dbj|BAF93879.1| DNA gyrase B [Sporosarcina sp. YM9-101]
          Length = 391

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 193/393 (49%), Positives = 274/393 (69%), Gaps = 3/393 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS   ++ ++  G ++ + F  G +   L V G    +TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSETTEVSVRLNGQVHFIEFKRGDVQKELSVIGETE-ETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + F   ++IF+    + Y+ L +RLREL++LN  + +++ D+R  E R     Y+GGI
Sbjct: 60  TTIRFKADAEIFTETTVYEYEILANRLRELAYLNRGLMVTITDERGEENRTDVYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V +L+++K+P+ + PI I+G +D ISI++AM++N GY EN+  F NNI   +GGTH 
Sbjct: 120 KSYVEHLNKNKEPIHEEPIFIEGEKDGISIEIAMQYNSGYAENLFSFANNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 SGFKTALTRIINDYSRKNGVLKEADPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV ++  S  ++G   +L E+P  A+ I+ K L A+  R AA+ AR+ TRRK VL+++S
Sbjct: 240 SEVSTITNSLFSEGFQRFLLENPSTARKIIDKSLMAARARLAAKNAREFTRRKSVLEVSS 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS RDP  SEL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 300 LPGKLADCSSRDPGISELYIVEGDSAGGSAKMGRDRHFQAILPLRGKILNVEKARLDRIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            + EI  +ITALGTGIG++ F+++K RYHK++I
Sbjct: 360 GNLEIRAMITALGTGIGEE-FNLSKARYHKLVI 391


>gi|110612671|gb|ABG78298.1| GyrB [uncultured bacterium]
          Length = 406

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 185/411 (45%), Positives = 268/411 (65%), Gaps = 7/411 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  +YKVSGGLHGVGVSVVNALS  L L I ++GN +   +  GI + PL         
Sbjct: 1   FDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQVYHKGIPEAPLA-ITGTSET 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F P   I     F++D L HR REL +LN ++ I  I +     RE     +GG
Sbjct: 60  TGTSIRFYPDLTIMETDAFSFDVLAHRFRELGYLNPALTI--ILREEETLREEVFHDEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGT 287
           I +F+ +++ +K+ +       +   +  + +++ ++ D    E +L + NNIP ++GGT
Sbjct: 118 IRSFLLFVNENKRTIHDPLSFRKSFDNGSTFEISFQYQDTTDAETLLSYVNNIPTREGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+ G R+ALTR +  +++    +K ++    G+D REG ++++SIK+P+P+F  QTK KL
Sbjct: 178 HVRGFRAALTRVVNRFIKDKNLNKGEEVR--GEDIREGLSAIVSIKIPNPQFEGQTKAKL 235

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            SS V   +E+F+ + L    E+    A+ I  K + ++  R+AAR+AR+LT+RK VL+ 
Sbjct: 236 GSSWVSGAMETFLAEALEDAFEKQGAVARAIADKAILSAQAREAARKARELTKRKNVLEG 295

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FD 466
           ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE+++  +
Sbjct: 296 SNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSKGVE 355

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           K ++  E+  LITA+G G+G + F +  LRYHKIIIMTDADVDG+HIRTLL
Sbjct: 356 KFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGSHIRTLL 406


>gi|148470272|gb|ABQ66083.1| gyrase b [uncultured bacterium]
          Length = 434

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 192/436 (44%), Positives = 267/436 (61%), Gaps = 21/436 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++K YK++GGLHGVGV VVNALS  L   +KR   IY   F  G+  
Sbjct: 1   EVIMTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSRLLIAVVKRPEGIYYEKFEKGVPS 60

Query: 157 NPLVVTGSAGNDT-----------------GTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
             L                           G  + F P  +IF   +F+Y  +  R++EL
Sbjct: 61  GGLQFVEKGSWGNTGEPEIDSIEPKLAQDHGLIIKFYPDPEIFEDLNFSYQVIHERIKEL 120

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           +FLN  V IS+ D+R      +    +GG+  FV YL    + +++ PI      ++  +
Sbjct: 121 AFLNPQVAISIKDERINASEVMHF--EGGLSQFVDYLGEGHQSILKEPIYNLEETEDTVV 178

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           +    +N+   E +  + NNI   +GGTH++G R+ L+R +  Y  K+    K   S++ 
Sbjct: 179 EFTFLYNNSTSEIMQSYVNNISTVEGGTHVTGFRAGLSRAVQDYA-KNHDLVKGVESIVS 237

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +VL +K+  P+F  QTK KL +S VR +V+S     L ++ E  P  A+ IV
Sbjct: 238 DDVREGLVAVLHVKVIAPQFEGQTKSKLGNSTVRGIVQSSTEKYLKSYFESFPNIAQNIV 297

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           ++V+ A+  R+A+R A++L RRK  L+  +LPGKLADCS  DP K+EL++VEG+SAGGSA
Sbjct: 298 RRVIMAAAAREASRNAKELVRRKSALESGNLPGKLADCSSSDPAKAELYIVEGESAGGSA 357

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQ R+R+ QAILPLRGKILNVE+A   K L+++EI  LIT +GT I +DS D++KLRY K
Sbjct: 358 KQARTRDYQAILPLRGKILNVEKAADIKTLANEEIRNLITVMGTNI-KDSLDLSKLRYGK 416

Query: 500 IIIMTDADVDGAHIRT 515
           IIIMTDADVDG+HIRT
Sbjct: 417 IIIMTDADVDGSHIRT 432


>gi|303305924|gb|ADM13621.1| gyrase B [Planococcaceae bacterium MW-10]
          Length = 393

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 189/391 (48%), Positives = 272/391 (69%), Gaps = 5/391 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVG SVVNALS   ++ +KR+G I+E+ F  G +   L V G A + TG+   
Sbjct: 5   QVSGGLHGVGASVVNALSEHAEVIVKRDGKIHEIKFERGAVTQELKVIGDA-DTTGSTTR 63

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F    +IF+    + +D L +R+REL++LN  + I++ D+R  E ++ T  Y+GGI+++V
Sbjct: 64  FKADPEIFTETTVYEFDILANRIRELAYLNRGLAITIQDEREGEEQKKTYHYEGGIKSYV 123

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+  K+PL + PI ++G ++ I+I++AM++N GY+  +  F NNI   +GGTH SG +
Sbjct: 124 EHLNAKKEPLHEEPIFVEGEKEGITIEIAMQYNAGYNAAIFSFANNINTYEGGTHESGFK 183

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR I  Y  K+   K+ + ++ GDD REG T+++SIK PDP+F  QTK KL +SEV 
Sbjct: 184 TALTRVINDYARKNNILKEAEANLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEVS 243

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +  S  +DG   +L E+P  A+ +V K +     R  A++AR+ TRRK  L+++SLPGK
Sbjct: 244 QITNSLFSDGFERFLLENPSVARQVVDKGM--MAARARAKKAREFTRRKSALEVSSLPGK 301

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADCS R+P +SEL++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L + E
Sbjct: 302 LADCSSRNPAESELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILGNNE 361

Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           I  +ITALGTGIG + F++ K RYHK++IMT
Sbjct: 362 IRAMITALGTGIGGE-FNLEKARYHKVVIMT 391


>gi|19912103|dbj|BAB88363.1| DNA gyrase subunit B [Cytophaga sp. I-1858]
          Length = 391

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 187/392 (47%), Positives = 252/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  LK  + R G IYE  +  G    P+   G   +  GT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSEHLKATVYRGGKIYEQEYERGKTLYPVKTIGDT-DKRGTTVTF 59

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIE 230
            P  +IF    +++YDTL  RLREL+FLN  + + LIDKR  +        T   + G+ 
Sbjct: 60  KPDPEIFQQTLEYSYDTLASRLRELAFLNKGITVHLIDKRHKKEDGSFEGETFHSEEGLT 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLD  ++PLM+  I  +G ++ I +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVRYLDATREPLMKDVIAFEGEKNGIPVEVAMVYNTSYAENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y ++S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTHTLKKYADESGMLDKLKFDISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V+ I  L
Sbjct: 240 EVSASVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMTHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +        +KLRYH
Sbjct: 360 NEEIKNIFTALGVTIGTEEDSKALNLSKLRYH 391


>gi|83415016|dbj|BAE53772.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 400

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 195/401 (48%), Positives = 261/401 (65%), Gaps = 10/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           + SYKVSGGLHGVGVS VNALS++LK  ++R+G IY   F  G   N L V G   ND G
Sbjct: 1   KDSYKVSGGLHGVGVSCVNALSAYLKAEVRRDGKIYTQEFSCGKATNVLTVIGET-NDRG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYK 226
           T ++F P S IF V ++ YD L  RLRELSFLN+ V++ L D+R+     + +  T +  
Sbjct: 60  TTISFKPDSSIFIVTEYKYDILASRLRELSFLNAGVKLELTDRRTLLVGGDYKHDTFYSS 119

Query: 227 GGIEAFVSYLDRHKKPLM-QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            G+  FV ++D  K+PL+ +  I I   +  I +++AM +N  Y+E++  + NNI   + 
Sbjct: 120 AGLNEFVRFIDAAKEPLIGKDIIHIVTEKQGIPVEVAMTYNTSYNESISSYVNNINTVEH 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH+SG R ALTR +  Y   S   +K K  +  DD REG T+V+SIK+ +P+F  QTK 
Sbjct: 180 GTHVSGFRRALTRTLKKYAVDSKLLEKVKIEISPDDFREGLTAVISIKVQEPQFEGQTKT 239

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++EV   V+  V + L  +LEEHP EAKIIV KV+ A+  R AAR AR++ +RK  L
Sbjct: 240 KLGNNEVTGAVDQAVGEALGNYLEEHPKEAKIIVDKVILAATARHAARNAREMVQRKSPL 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               LPGKLADCS++DP++ E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A  
Sbjct: 300 AGGGLPGKLADCSDKDPERCEIFLVEGDSAGGTAKQGRDRKYQAILPLRGKILNVEKAMP 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIII 502
            K+  S EI  +  ALG  IG        +I KLRYHK++I
Sbjct: 360 HKVFESVEIRNIFIALGVTIGTSEDSKELNIEKLRYHKVVI 400


>gi|51587623|emb|CAH19217.1| gyrase B [Corallococcus coralloides]
          Length = 386

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 206/389 (52%), Positives = 276/389 (70%), Gaps = 3/389 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +YKVSGGLHGVGV+ VN LS W K+R++ +G +YE ++  GI   P+   G   +  GT 
Sbjct: 1   AYKVSGGLHGVGVTCVNFLSEWFKVRVQTKGKVYEHAYERGIPTGPVQEVG-TTDKRGTY 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P + +    DFN++TL  RLREL+FLN+ + I++ D R+ +  E    + GGI +F
Sbjct: 60  IAFKPDTSVMETVDFNFETLSQRLRELAFLNAGLHITVRDLRTNKEHE--FKFDGGISSF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL++ K+ L   PI  +  R+ +++++AM+WNDGY E +  F NNI   +GG+HLSG 
Sbjct: 118 VEYLNKSKEVLHDKPISFKAEREGVTLEIAMQWNDGYDERIYTFANNINTHEGGSHLSGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+P+P+F  QTK KL +SEV
Sbjct: 178 KAALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLPNPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE  VND L+ +LEE P+ AK +V K+ DA   R AAR+AR+  RRKGVLD   LPG
Sbjct: 238 KGLVEQMVNDQLATFLEETPMVAKKVVAKIGDACRARIAARKARETVRRKGVLDGGGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S 
Sbjct: 298 KLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSA 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKII 501
           EI TLITALGTGIG + +D  K RYH+II
Sbjct: 358 EIVTLITALGTGIGAEDYDPEKARYHRII 386


>gi|281486937|gb|ADA71016.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 374

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 223/377 (59%), Positives = 286/377 (75%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D   +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGSGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQT++KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTEDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|148971275|gb|ABR20175.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 434

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 193/438 (44%), Positives = 270/438 (61%), Gaps = 21/438 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++K YK++GGLHGVGV VVNALS  L   +KR   IY   F  G+  
Sbjct: 1   EVIMTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSRLLIAVVKRPEGIYYEKFEKGVPS 60

Query: 157 NPLVVTGSAGNDT-----------------GTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
             L                           G  + F P  ++F   +F+Y  +  R++EL
Sbjct: 61  GGLRFVEKGSWGNTGEPEIDSIEPKLAQDHGLIIKFYPDPEVFEDLNFSYQVIHERIKEL 120

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           +FLN  V IS+ D+R      +    +GG+  FV YL    + +++ PI      ++  +
Sbjct: 121 AFLNPQVAISIKDERINASEVMHF--EGGLSQFVDYLGEGHQSILKEPIYNLEETEDTVV 178

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           + A  +N+   E +  + NNI   +GGTH++G R+ L+R +  Y  K+    K   S++ 
Sbjct: 179 EFAFLYNNSTSEIMQSYVNNISTVEGGTHVTGFRAGLSRAVQDYA-KNHDLVKGVESIVS 237

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +VL +K+  P+F  QTK KL +S VR +V+S     L ++ E  P  A+ IV
Sbjct: 238 DDVREGLVAVLHVKVIAPQFEGQTKSKLGNSTVRGIVQSSTEKYLKSYFESFPNIAQNIV 297

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           ++V+ A+  R+A+R A++L RRK  L+  +LPGKLADC+  DP K+EL++VEG+SAGGSA
Sbjct: 298 RRVIMAAAAREASRNAKELVRRKSALESGNLPGKLADCTSSDPAKAELYIVEGESAGGSA 357

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQ R+R+ QAILPLRGKILNVE+A   K L+++EI  LIT +GT I +DS D++KLRY K
Sbjct: 358 KQARTRDYQAILPLRGKILNVEKAADIKTLANEEIRNLITVMGTNI-KDSLDLSKLRYGK 416

Query: 500 IIIMTDADVDGAHIRTLL 517
           IIIMTDADVDG+HIRTLL
Sbjct: 417 IIIMTDADVDGSHIRTLL 434


>gi|19909587|dbj|BAB86989.1| DNA gyrase subunit B [Brevundimonas subvibrioides ATCC 15264]
          Length = 393

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 252/393 (64%), Positives = 302/393 (76%), Gaps = 6/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-- 168
           Q SYKVSGGLHGVGVSVVNALS WLKL I R G  +EM F  G     L VTG A     
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLKLVIFRNGQRHEMKFERGDTVESLRVTGEAPMREN 60

Query: 169 ----TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               +GT+VTF PS   F+  DF+  TL+HRLREL+FLNS V I L D R  EP E  + 
Sbjct: 61  GKVLSGTQVTFYPSVTTFAHIDFDLKTLEHRLRELAFLNSGVVIKLQDHRGVEPFEEILH 120

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GG+EAFV +LD+ K P+++  I I+G RDNI IDLA+ WND YHE +LCFTNNIPQ+D
Sbjct: 121 YEGGVEAFVRHLDKSKTPILKDVIVIRGKRDNIEIDLALWWNDSYHETMLCFTNNIPQRD 180

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHLS  R++LT+ + +Y+E S   KK+K +  G+D REG T VLS+K+PDP+FSSQTK
Sbjct: 181 GGTHLSAFRTSLTKVMGAYMESSGALKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQTK 240

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEVR  VE    DGL+ W EEHP+EAK +V K+++A+  R+AAR+ARDLTRRK  
Sbjct: 241 DKLVSSEVRPAVEGLCTDGLNQWFEEHPVEAKAVVAKIIEAASAREAARKARDLTRRKSA 300

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LDI+SLPGKLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERAR
Sbjct: 301 LDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERAR 360

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           FD+MLSS+ IGTLI ALGTGIG+D F+ +KLRY
Sbjct: 361 FDRMLSSELIGTLILALGTGIGRDDFNADKLRY 393


>gi|12644438|sp|Q43947|GYRB_ACICA RecName: Full=DNA gyrase subunit B
 gi|4514407|dbj|BAA75402.1| DNA gyrase subunit B [Acinetobacter calcoaceticus]
          Length = 388

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 226/391 (57%), Positives = 284/391 (72%), Gaps = 3/391 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGV VSVVNALSS L L I R G ++E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVSVSVVNALSSKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   F+   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFTQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       +   I +++A++WN+ Y ENV CFTNNIPQKDGG+HL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTADTDSGIGVEVALQWNESYQENVRCFTNNIPQKDGGSHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+S
Sbjct: 298 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMIS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           SQE+GTLITALG GIG++ ++ +KLRYHKII
Sbjct: 358 SQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|326427380|gb|EGD72950.1| DNA topoisomerase II [Salpingoeca sp. ATCC 50818]
          Length = 1795

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 124/586 (21%), Positives = 231/586 (39%), Gaps = 56/586 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E++ NA 
Sbjct: 70  YQKKTQLEHILLRPDTYIGSVESNTKNLFVVDPEAGFVQREITYVPGLYKIFDEIIVNAA 129

Query: 54  DESLEGYA-DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D  +     D I VT++      +V + G+GIP  +H +EG+   E+I   L     ++ 
Sbjct: 130 DNKIRDPTMDCIKVTIDKAKAEISVYNTGKGIPVQVHAKEGVYVPELIFGHLLTSSNYDD 189

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDN--PLVVTGSAGN 167
              KV+GG +G G  + N  S+   +       G  Y   F + +     P++V   + +
Sbjct: 190 NQKKVTGGRNGYGAKLCNIFSTKFVVETCDTETGKKYRQVFRDNMAIKEDPVIVKTKSSD 249

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              T +TF P    F + + + D    +  R+ +++     +++ L ++R P        
Sbjct: 250 KDFTRITFRPDLSKFHMSELDDDIIALMARRVYDVAGTTRGIKVYLNNERLPVRH----- 304

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
                + +V+ + R +    +    +   R    + + +  N       + F N+I    
Sbjct: 305 ----FKDYVNLVLRDQNVDTKVVHEVVNDR--WEVCMTLSEN---GFQQMSFVNSIATTK 355

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++ +   +   + S +++         +V     +      ++  + +P F SQTK
Sbjct: 356 GGTHVNYVADQIVSGLLSTIKRKN----KGAAVKPHQVKNHMWLFINCLIENPSFDSQTK 411

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E +            ++D       ++  +  I+   +  A +   A         +K  
Sbjct: 412 ENMTRRSKDFGSNPVLSDK----FLKNIKDTGIVDAVLNWAKLKSQAQLSKASSGSKKCK 467

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVE 461
           +          +   R+  K  L L EGDSA   A  G     R+   + PLRGK+LNV 
Sbjct: 468 ISGIPKLDDANEAGGRNSSKCTLILTEGDSAKALAVSGLGVLGRDYYGVFPLRGKLLNVR 527

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            A   +++ + E+  +   +G   G +     +LRY +++IMTD D DG+HI+ LL+ F 
Sbjct: 528 EASHKQIMDNAEVKNIAKIMGLKFGHEYTTTKQLRYGRLMIMTDQDQDGSHIKGLLINFI 587

Query: 522 FRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
               PSL+      +    P+   T+GK           E +   Q
Sbjct: 588 HHFWPSLLKMPDFLVEFVTPIVKCTKGKQEVSFFTIPQYETWAEQQ 633


>gi|322695778|gb|EFY87581.1| DNA topoisomerase 2 [Metarhizium acridum CQMa 102]
          Length = 1653

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 151/714 (21%), Positives = 269/714 (37%), Gaps = 53/714 (7%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S       Y     Q L  L+ + KRP  YIG  +                         
Sbjct: 128 SSKTATEMY-----QKLTQLEHIIKRPDTYIGSVEKTDQQMWVYNKTTSQMEYKNITYVP 182

Query: 40  GLHHMIYEVLDNAIDES-LEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAA 96
           G + +  E++ NA D S  EG     + V +N + G  +V +NG+GIP  +H++E I   
Sbjct: 183 GFYKIFDEIMVNAADNSQREGSGMTFMKVNINRETGEISVENNGKGIPIVIHEKEKIYIP 242

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGI 154
           E+I   L AG  F+    K  GG +G G  + N  S    +  +    G  Y+ ++ + +
Sbjct: 243 EMIFGHLLAGSNFDDNEKKTVGGRNGYGAKLCNVFSKEFTVECQDAGNGKKYKQTWTDNM 302

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ----HRLRELSFLNSSVQISL 210
                    S+ +     +TF P  D F + +   D L+     R+ +++     V++ L
Sbjct: 303 QKMQKAKITSSKSADFVRITFKPDYDRFGMPEGIDDDLEALLYRRVYDMAGTVHGVRVYL 362

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
             ++               ++  +     +       + I   + +   ++A   +DG  
Sbjct: 363 NGEQIKLRDFKAYCDL-YAKSIAAERTAEEGGTPTCTVEIDKDKSHPRWEVAFTVSDGTF 421

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           + V  F N+I    GGTH++ +   +T  +   ++K       K+S      R      +
Sbjct: 422 QQV-SFVNSIATTTGGTHVNYIADQITGSLLKALDKKKKGHSLKQSH----LRNHIFIFI 476

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           +  + +P F+SQTKE+L +      V  F +  +        +     ++ ++D +  + 
Sbjct: 477 NCFIENPAFNSQTKEQLTTK-----VSQFGSKCVLGDAFLKAIAKSDAIENIMDFAQKKA 531

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SREN 447
               ++    ++  +  A L         R   +  L L EGDSA G A  GR     + 
Sbjct: 532 DKMLSKSDGSKRARVSNAKLVEANL-AGTRRGHECTLILTEGDSAKGLAVSGRAILDPDK 590

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
             + PLRGK+LNV  A  D++  +QEI  +   LG    Q   D   LRY  ++IMTD D
Sbjct: 591 IGVFPLRGKLLNVRDASLDQITKNQEIQNIKQFLGLKHKQVYTDTKSLRYGHLMIMTDQD 650

Query: 508 VDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
            DG+HI+ LL+ F   Q PSL+    FL     P+  + +G   +  +  +S        
Sbjct: 651 HDGSHIKGLLINFLQVQFPSLLKIPKFLQEFITPIVKVWQGPDPKKPQRLKSFFTQPQYD 710

Query: 567 SLSEEIELFCDSKGVISKNDLRNFI-DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
              E  +             L     +DA      + +     +    E+A +  +   +
Sbjct: 711 EWKESHKAELSRWQSKYFKGLGTSSNEDAQVYFTNLDNHLKEFETMKSEEAELFDLVFSK 770

Query: 626 SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
              +                    E ++   ++   IL            V++G
Sbjct: 771 KKADARKEWLGNYIPGTFLDHSTKEITYTDFVSKELILFSMADNLRSIPSVIDG 824


>gi|289619683|emb|CBI53966.1| putative TOP2 protein [Sordaria macrospora]
          Length = 1915

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 152/694 (21%), Positives = 261/694 (37%), Gaps = 55/694 (7%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GL 41
                 Y     Q L  L+ + KRP  YIG  +                         GL
Sbjct: 124 KTATEMY-----QKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVPGL 178

Query: 42  HHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           + +  E+L NA D S        + V++N + G  +V +NG+GIP ++H  E     E+I
Sbjct: 179 YKIFDEILVNAADNSQRDSSMTFLKVSINRESGEISVENNGKGIPVEIHGTEKCYVPELI 238

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDN 157
              L AG  F+    K  GG +G G  + N  S    L  +    G  Y+ ++ + +   
Sbjct: 239 FGHLLAGSNFDDNEKKTVGGRNGYGAKLTNIFSREFILECQDSVNGKRYKQTWTDNMSKM 298

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ----HRLRELSFLNSSVQISLIDK 213
                 S        +TF P    F + D   D L+     R+ +++   S +++ L  +
Sbjct: 299 STPKITSNKAADFVRITFRPDFSKFGMADGIDDDLEALLYRRVYDMAGTVSGIKVWLNGE 358

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-IDLAMRWNDGYHEN 272
                 +          A         + +  + +  +  R      ++    +DG  + 
Sbjct: 359 HLKLNFKTYCGLYAKAIAKERDEVADGEDVTPATVIFEQQRSEGKLWEVGFTVSDGSFQQ 418

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F NNI    GG+H++ +   +   +   +++          +   + +  F   ++ 
Sbjct: 419 V-SFVNNIATTSGGSHVNYIADQIIEVLMKELQRKK---GKGHGLKTANVKNQFFIFINC 474

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
            + +P FSSQTKE+L +   R          L     +   +++ I   +  A   RD  
Sbjct: 475 LIDNPAFSSQTKEQLTTKPARF----GSKCQLGDQFLKKVRQSEAIDNLLSFADKKRDKD 530

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQA 449
               D ++RK + +   +         +  ++  L L EGDSA G A  GR         
Sbjct: 531 LAKNDGSKRKRISNDKLIEANY--AGGKYSQECTLILTEGDSARGLAVAGRAILDPNRIG 588

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           + PLRGK+LNV  A  D++L ++E+  +   LG   G+   D   LRY  ++IM D D+D
Sbjct: 589 VFPLRGKMLNVRDASADQILKNKEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDLD 648

Query: 510 GAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGI---TRGKSLQYVKDEESLEDYLIN 565
           G+HI+ LL+ FF  Q PSL+    F      P+  +      +  Q ++   +L  Y   
Sbjct: 649 GSHIKGLLINFFECQFPSLLRIPNFFQEFITPVVKVWQGPNPRKPQKLQGFFTLPQYE-E 707

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
              S + EL       +         D  +    L K        T  E  +    F+ +
Sbjct: 708 WKESHKNELRRWKYKYLKGLGSSTTDDAQIYFTNLTKHLKEFDVMTREESEMFELAFSKK 767

Query: 626 SDQEINVSLAS-KLANRLNFIAEKSEKSWHGSIN 658
                   LA  +    L+   EK   +   +  
Sbjct: 768 KADARKEWLAKCEPGTYLDHSTEKISYTDFVNRE 801


>gi|212659875|gb|ACJ37002.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|212659877|gb|ACJ37003.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|212659879|gb|ACJ37004.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 268

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 142/270 (52%), Positives = 193/270 (71%), Gaps = 2/270 (0%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           +++EV+DN++DE+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T L
Sbjct: 1   LVFEVVDNSVDEALAGHADSILVKIHIDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL    
Sbjct: 61  HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL- 119

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                 GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R    
Sbjct: 120 EVSAKRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDF 178

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI +FV +L + K PL  + I + G  + I +D A++W D Y E + CFTNNIPQK
Sbjct: 179 HYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGIVVDAALQWTDAYQETMYCFTNNIPQK 238

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           DGGTHL+G R+ALTR + +Y+E++  +++ 
Sbjct: 239 DGGTHLAGFRAALTRTLGNYIEQNGVARQA 268


>gi|25006381|dbj|BAC24010.1| DNA topoisomerase II [Trichophyton rubrum]
          Length = 1097

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 142/682 (20%), Positives = 247/682 (36%), Gaps = 41/682 (6%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDN 51
             Q +  L+ + KRP  YIG  +                         GL+ +  E+L N
Sbjct: 1   QYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVN 60

Query: 52  AIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D          I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +
Sbjct: 61  AADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNY 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGN 167
           N    KV+GG +G G  + N  S    +     ++   +++++ N +             
Sbjct: 121 NDMQEKVTGGRNGYGAKLCNIFSKEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKG 180

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           D  T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y  
Sbjct: 181 DDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYME 240

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                +                I     +   ++    +DG  + V  F N+I    GGT
Sbjct: 241 MYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGT 299

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++ +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L
Sbjct: 300 HVNYISDQI---CNKLADALKKKNKTGATLKATQIKNHIFLFVNSQIVNPAFTSQTKEQL 356

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +   +   +  V+D     + +  +   I+      A  +       R        L  
Sbjct: 357 TTRPSQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTD 416

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERAR 464
           A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A 
Sbjct: 417 ANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDAS 470

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +    
Sbjct: 471 VDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDYDGSHIKGLLINYLQVA 530

Query: 525 MPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            P+L+   GFL     P+  + +G        +         +            K    
Sbjct: 531 FPTLLKIPGFLIEFITPIVKVWKGDPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYK 590

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                +  D  +    L +     H     E  +I   F+ +   E       +      
Sbjct: 591 GLGTSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTY 649

Query: 644 FIAEKSEKSWHGSINNSDILVK 665
                 + ++   IN   IL  
Sbjct: 650 LDHSTDQITYTDFINKELILFS 671


>gi|116874214|gb|ABK30796.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 367

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 219/370 (59%), Positives = 285/370 (77%), Gaps = 4/370 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    YKGGI+AFV 
Sbjct: 60  WPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYKGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 FLNKNKTPIHPNVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTG 484
            TLITALG G
Sbjct: 358 ATLITALGCG 367


>gi|51571607|emb|CAH18970.1| gyrase B [Corallococcus coralloides]
          Length = 385

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 207/388 (53%), Positives = 276/388 (71%), Gaps = 3/388 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +YKVSGGLHGVGV+ VN LS W K+R++ +G +YE S+  GI   P+   GS  +  GT 
Sbjct: 1   AYKVSGGLHGVGVTCVNFLSEWFKVRVQTKGKVYEHSYERGIPTGPVQEVGST-DKRGTY 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P + +    DFN++TL  RLREL+FLN+ + I++ D R+ +  E    + GGI +F
Sbjct: 60  IAFKPDTTVMETVDFNFETLSQRLRELAFLNAGLHITIRDLRTNKEHE--FKFDGGIASF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL++ K+ L   PI  +  R+ +++++AM+WNDGY E +  F NNI   +GG+HLSG 
Sbjct: 118 VEYLNKSKEVLHDKPIAFKTEREGVTLEIAMQWNDGYDERIYTFANNINTHEGGSHLSGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+P+P+F  QTK KL +SEV
Sbjct: 178 KAALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLPNPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE  VND L+ +LEE P+ AK +V K+ DA   R AAR+AR+  RRKGVLD   LPG
Sbjct: 238 KGLVEQMVNDQLATFLEETPMVAKKVVAKIGDACRARIAARKARETVRRKGVLDGGGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S 
Sbjct: 298 KLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSA 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           EI TLITALGTGIG + +D  K RYH+I
Sbjct: 358 EIVTLITALGTGIGAEDYDPEKARYHRI 385


>gi|313747316|dbj|BAJ41205.1| DNA gyrase subunit B [Terribacillus saccharophilus]
 gi|313747318|dbj|BAJ41206.1| DNA gyrase subunit B [Terribacillus saccharophilus]
          Length = 390

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 203/393 (51%), Positives = 274/393 (69%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+E SF  GI    L VTG + + TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTQLDVMVHRDGKIHEQSFQRGIPTGDLQVTGES-DRTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F P  +IF+    +N +TL  R+REL+FLN  + ISL D+R   P  +T  Y+GGI
Sbjct: 60  TITHFKPDPEIFTETTEYNKETLLVRIRELAFLNKGLAISLEDRREENPEPVTFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+R K+ L   P   + +   I++++A+++NDGY  ++  F NNI   +GGTH 
Sbjct: 120 RSYVEHLNRSKEVLH-EPFYAENTDSEITVEVALQYNDGYTSSIYSFANNIHTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G +S LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 179 AGFKSGLTRVINDYARKNNMFKEADPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R V ++   +  S +L E+P  A+I+V+K L AS  R AA+RAR+LTRRKG L+++S
Sbjct: 239 SEARQVTDAAFTELFSKFLFENPDTARIVVEKGLMASRARIAAKRARELTRRKGALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR DK+L
Sbjct: 299 LPGKLADCSSKDATISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ++ EI  +ITALGTGIG+D FDI+K RYHK++I
Sbjct: 359 ANNEIRAMITALGTGIGED-FDISKARYHKLVI 390


>gi|212659914|gb|ACJ37013.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 269

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 144/271 (53%), Positives = 195/271 (71%), Gaps = 2/271 (0%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
           M++EV+DN++DE+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T L
Sbjct: 1   MVFEVVDNSVDEALAGHADSILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL    
Sbjct: 61  HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL- 119

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                 GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R    
Sbjct: 120 EVSAKRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDF 178

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQK
Sbjct: 179 HYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQK 238

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           DGGTHL+G R+ALTR + +Y+E++  +++ K
Sbjct: 239 DGGTHLAGFRAALTRTLGNYIEQNGIARQAK 269


>gi|261883807|ref|ZP_06007846.1| DNA gyrase subunit B [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 247

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 114/196 (58%), Positives = 140/196 (71%), Gaps = 2/196 (1%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y A +I++LKGL+AV+KRP MYIGDT+  SGLHHMIYEV+DN+IDES+ GY D I +
Sbjct: 5   EKNYGAGNIKVLKGLEAVRKRPGMYIGDTN-ISGLHHMIYEVVDNSIDESMAGYCDTINI 63

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L  +GSC V+DNGRGIP D+H  E ISAA V++T LHAGGKF++ +YKVSGGLHGVGVS
Sbjct: 64  ELTREGSCIVTDNGRGIPVDIHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 123

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L L IKR+GN+Y   F  GI  N L       N TGT V F P  DIF V +
Sbjct: 124 VVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRTGTSVEFWPDDDIFEVTE 182

Query: 187 FNYDTLQHRLRELSFL 202
           F+   L  R +EL++ 
Sbjct: 183 FDKQILLKRFKELAYF 198


>gi|326427379|gb|EGD72949.1| DNA topoisomerase II, variant [Salpingoeca sp. ATCC 50818]
          Length = 1761

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 127/606 (20%), Positives = 238/606 (39%), Gaps = 63/606 (10%)

Query: 2   SDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES--------------- 39
           +  ++ S   AD+        Q    L+ +  RP  YIG  +  +               
Sbjct: 16  TQAMKKSKKGADAGKTVEEIYQKKTQLEHILLRPDTYIGSVESNTKNLFVVDPEAGFVQR 75

Query: 40  ------GLHHMIYEVLDNAIDESLEGYA-DIITVTLNMDG-SCTVSDNGRGIPTDLHKEE 91
                 GL+ +  E++ NA D  +     D I VT++      +V + G+GIP  +H +E
Sbjct: 76  EITYVPGLYKIFDEIIVNAADNKIRDPTMDCIKVTIDKAKAEISVYNTGKGIPVQVHAKE 135

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMS 149
           G+   E+I   L     ++    KV+GG +G G  + N  S+   +       G  Y   
Sbjct: 136 GVYVPELIFGHLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSTKFVVETCDTETGKKYRQV 195

Query: 150 FINGILDN--PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNS 204
           F + +     P++V   + +   T +TF P    F + + + D    +  R+ +++    
Sbjct: 196 FRDNMAIKEDPVIVKTKSSDKDFTRITFRPDLSKFHMSELDDDIIALMARRVYDVAGTTR 255

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            +++ L ++R P             + +V+ + R +    +    +   R    + + + 
Sbjct: 256 GIKVYLNNERLPVRH---------FKDYVNLVLRDQNVDTKVVHEVVNDR--WEVCMTLS 304

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
            N       + F N+I    GGTH++ +   +   + S +++         +V     + 
Sbjct: 305 EN---GFQQMSFVNSIATTKGGTHVNYVADQIVSGLLSTIKRKN----KGAAVKPHQVKN 357

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
                ++  + +P F SQTKE +            ++D       ++  +  I+   +  
Sbjct: 358 HMWLFINCLIENPSFDSQTKENMTRRSKDFGSNPVLSDK----FLKNIKDTGIVDAVLNW 413

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG-- 442
           A +   A         +K  +          +   R+  K  L L EGDSA   A  G  
Sbjct: 414 AKLKSQAQLSKASSGSKKCKISGIPKLDDANEAGGRNSSKCTLILTEGDSAKALAVSGLG 473

Query: 443 -RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
              R+   + PLRGK+LNV  A   +++ + E+  +   +G   G +     +LRY +++
Sbjct: 474 VLGRDYYGVFPLRGKLLNVREASHKQIMDNAEVKNIAKIMGLKFGHEYTTTKQLRYGRLM 533

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLE 560
           IMTD D DG+HI+ LL+ F     PSL+      +    P+   T+GK           E
Sbjct: 534 IMTDQDQDGSHIKGLLINFIHHFWPSLLKMPDFLVEFVTPIVKCTKGKQEVSFFTIPQYE 593

Query: 561 DYLINQ 566
            +   Q
Sbjct: 594 TWAEQQ 599


>gi|197295762|gb|ACH58591.1| gyrase subunit B [Methylobacterium phyllosphaerae]
          Length = 389

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 236/389 (60%), Positives = 297/389 (76%), Gaps = 7/389 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALSSWL+LRI R    + M F +G    PL V G      GTEV+FLPS
Sbjct: 1   GLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVVGPGNGRRGTEVSFLPS 60

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y+GGIEAFV YLDR
Sbjct: 61  TETFTMIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYEGGIEAFVRYLDR 120

Query: 239 HKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +KP+  M SP+ +   RD I +++A  WND ++E VL FTNNIPQ+DGGTH++G R+AL
Sbjct: 121 SRKPIDGMTSPVVVSSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TRQ+T Y E S  +KK+K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  V
Sbjct: 181 TRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPAV 240

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLAD
Sbjct: 241 ENVLNEGLSTWLEENPSQARSVMAKVVLAASAREAARKARETVTRKGALDIASLPGKLAD 300

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS EIGT
Sbjct: 301 CQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIGT 360

Query: 477 LITALGTGIGQDS-----FDINKLRYHKI 500
           LITALG GIG+ S     F+  KLRYH+I
Sbjct: 361 LITALGAGIGRSSTDREGFNPEKLRYHRI 389


>gi|95108291|emb|CAK18167.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. smithia]
 gi|237761973|emb|CAY86116.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. smithia]
          Length = 372

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDCIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|38224428|gb|AAR14137.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp.
           funduliforme]
          Length = 403

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 179/403 (44%), Positives = 262/403 (65%), Gaps = 4/403 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGND 168
             +YKVSGGLHGVG+SVVNALS W ++++KREGN+Y   ++ G     + +     AG  
Sbjct: 2   NDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPIEDVKIISALEAGET 61

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  +IF    F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +  ++GG
Sbjct: 62  TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGG 121

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  F+  + +  + L+   I I+G  + + +D+A  +  G  E +  F NNI   +GG+H
Sbjct: 122 ISDFLKEVTQENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEIIYSFVNNINTTEGGSH 181

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKR-SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           +  L     +      +KS   +  K  +       +    ++S+K+P P+F  QTK KL
Sbjct: 182 VPDLELVY-KGFNDIGKKSGTFEGKKMENYKEATFGKELLLIISVKVPQPQFEGQTKTKL 240

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SEV  +V + ++  L  +LE++P + K+I++K+L++   R+AA+RAR+   RK VL++
Sbjct: 241 GNSEVSGIVNTVLSTDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEV 300

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            SLPGKLADCS + P++ E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K
Sbjct: 301 GSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHK 360

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            L S EI  ++TA GT IG++SFD+ KLRY KII+MTDADVDG
Sbjct: 361 ALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 403


>gi|28974177|gb|AAO61457.1| gyrase B subunit [Bacillus safensis]
          Length = 378

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 188/380 (49%), Positives = 264/380 (69%), Gaps = 3/380 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L + + R+G I+   F  G+    L V G   + TGT   F+P  +IF+  
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTET 59

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + 
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVH 119

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + P+ I+G +D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y 
Sbjct: 120 EEPVYIEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYA 179

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L
Sbjct: 180 RKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEAL 239

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P  AK IV+K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  
Sbjct: 240 EKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSI 299

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 300 SELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 359

Query: 485 IGQDSFDINKLRYHKIIIMT 504
           IG+D F + K RYHKI+IMT
Sbjct: 360 IGED-FTLEKARYHKIVIMT 378


>gi|161085580|dbj|BAF93877.1| DNA gyrase B [Bacillus sp. YM6-204]
          Length = 390

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 187/393 (47%), Positives = 264/393 (67%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS    +++ REG+I+E+ F  G     L + G   +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSVETIVQVHREGHIHEIKFQRGKTIQELKIIGDT-DRNG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F    +IF     + YD L HR+REL++LN  ++I++ D+R  E R  T  Y+GGI
Sbjct: 60  TTTRFKADPEIFKETTVYEYDILAHRIRELAYLNRGIRITIADEREGEERSTTYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L++ K+P+      + G +D IS+++AM++N G+  N+  F NNI   +GGTH 
Sbjct: 120 RSYVEHLNQSKEPIHDPID-VLGEKDGISVEIAMQYNAGFSSNIFSFANNINTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  K    K+   ++ G+D REG T+++S+K PDP+F  QTK KL +
Sbjct: 179 SGFKTALTRVINDYARKGGLLKEADANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +  +  +DG   ++ E+P  A+ +V+K L A+  R AA++AR+ TRRK  L+++S
Sbjct: 239 SEVSQITNALFSDGFERFMLENPTVARKVVEKGLMAARARVAAKKAREFTRRKNALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS  +P + E+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 299 LPGKLADCSSTNPAECEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITA GTGIG++ F++ K RYHKIII
Sbjct: 359 SNAEIRAMITAFGTGIGEE-FNLEKARYHKIII 390


>gi|25006385|dbj|BAC24012.1| DNA topoisomerase II [Trichophyton violaceum]
          Length = 1094

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 142/681 (20%), Positives = 248/681 (36%), Gaps = 41/681 (6%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q +  L+ + KRP  YIG  +                         GL+ +  E+L NA
Sbjct: 1   YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 60

Query: 53  IDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D          I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N
Sbjct: 61  ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   +     ++   +++++ N +             D
Sbjct: 121 DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGD 180

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
             T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y   
Sbjct: 181 DYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEM 240

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
               +                I     +   ++    +DG  + V  F N+I    GGTH
Sbjct: 241 YTKAIKAERGEDTTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++ +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L 
Sbjct: 300 VNYISDQI---CNKLADALKKKNKTGATLKATQIKNHIFLFVNSQIVNPAFTSQTKEQLT 356

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +   +   +  V+D     + +  +   I+      A  +       R        L  A
Sbjct: 357 TRPSQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDA 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARF 465
           +  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  
Sbjct: 417 NKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASV 470

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     
Sbjct: 471 DQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAF 530

Query: 526 PSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           P+L+   GFL     P+  + +G        +         +            K     
Sbjct: 531 PTLLKIPGFLIEFITPIVKVWKGDPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYKG 590

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
               +  D  +    L +     H     E  +I   F+ +   E       +       
Sbjct: 591 LGTSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYL 649

Query: 645 IAEKSEKSWHGSINNSDILVK 665
                + ++   IN   IL  
Sbjct: 650 DHSTDQITYTDFINKELILFS 670


>gi|302124418|gb|ADK93814.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 376

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 226/379 (59%), Positives = 288/379 (75%), Gaps = 3/379 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS  
Sbjct: 1   SVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDT 59

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+  
Sbjct: 60  LFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHP 117

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                   +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++
Sbjct: 118 KVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 177

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+
Sbjct: 178 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 237

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  S
Sbjct: 238 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 297

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GI
Sbjct: 298 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 357

Query: 486 GQDSFDINKLRYHKIIIMT 504
           G+D ++ +KLRYH IIIMT
Sbjct: 358 GRDEYNPDKLRYHNIIIMT 376


>gi|150951045|ref|XP_001387295.2| DNA topoisomerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388275|gb|EAZ63272.2| DNA topoisomerase II [Pichia stipitis CBS 6054]
          Length = 1439

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 166/773 (21%), Positives = 273/773 (35%), Gaps = 53/773 (6%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S+  ++ S  +++ Q L  L+ + KRP  YIG  +                         
Sbjct: 55  SNGTKSKSNASETYQKLSQLEHILKRPDTYIGSVERTKMEMWSYDEASDEMVYKEVSIVP 114

Query: 40  GLHHMIYEVLDNAIDESLEGYA-DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D  +       I V ++ +  +  V ++GRGIP ++H++E I   E
Sbjct: 115 GLYKIFDEILVNAADNKIRDPTMKNIRVKIDPENNTIQVMNDGRGIPIEIHEKEKIYIPE 174

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI--YEMSFINGIL 155
           +I   L     ++    KV+GG +G G  + N  S+  +L          Y+ ++   + 
Sbjct: 175 LIFGNLLTSSNYDDDEKKVTGGRNGFGAKLCNIFSTEFQLETADLNTELLYKQTWTGNMS 234

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLI 211
                 +T        T+V+F P    F ++  + +    L+ R+ +L        + L 
Sbjct: 235 QVTKPKITKLKTKKEYTKVSFRPDLSKFGMESLDEEILSVLRRRVYDLCGTVKDCNVYLN 294

Query: 212 DKRSPEPREITM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
           DK+       +            S     ++        +     N   +LA   +DG  
Sbjct: 295 DKKLNVRNFKSYVEMYVNAIKKRSPDTALEENNGTKYTTVVHEVFNDRWELAFAVSDGSF 354

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
             V  F N+I    GGTH+  +   +  ++   + K     K K  +   + R      L
Sbjct: 355 NQV-SFVNSIATTSGGTHVKYVSDQIINKLVETLSK-KEKGKKKLMIKPQEVRNNMFLFL 412

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDAS 386
           +  + +P F+SQTKE+L +      V  F        +      +K     IV K+ D +
Sbjct: 413 NCLIENPAFTSQTKEQLTTR-----VSQFGGKPSEKLVISDNFISKILKTSIVDKIRDIA 467

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQ 441
              +     +    +K  +              RD  K  L L EGDSA      G A  
Sbjct: 468 NANEDKALQKADGSKKSRIKGQVKLVDANKAGTRDGNKCTLILTEGDSALSLAVSGLAVV 527

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHK 499
           GR        PLRGK+LNV  A  D++  + EI  L   +G    +     +   LRY  
Sbjct: 528 GRD--YYGCFPLRGKLLNVREASADQIAKNTEINALKQIIGLQHKKVYTPENAKTLRYGH 585

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEES 558
           I+IMTD D DG+HI+ L++ F     P L++  GFL     P+  +T  K     +    
Sbjct: 586 IMIMTDQDQDGSHIKGLIINFLETSFPGLLNIPGFLLEFITPIIKVTIKKRGGGKEVIPF 645

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
                       E      S            ++       L K     H     ++  I
Sbjct: 646 YNMPEFETWREREGGNSRWSHKYYKGLGTSTPLEARQYFSALDKHLKRFHALQEDDKQYI 705

Query: 619 SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
              F+ +   E             +     +E      IN   IL            VL+
Sbjct: 706 DLAFSKKKADER-KEWLQGFQPGTHLDPNLTEIPISDFINQELILFSMADNVRSIPSVLD 764

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
           G         Y     N   E  +  LS   +       G  SL+ TI  + +
Sbjct: 765 GFKPGQRKVLYGCFKRNLKSEIKVAQLSGYVSEKTGYHHGEQSLVQTIIGLAQ 817


>gi|281486941|gb|ADA71018.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 374

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 222/377 (58%), Positives = 287/377 (76%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNA+S  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNAVSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++ +
Sbjct: 358 LITALGCGIGRDEYNPD 374


>gi|254580647|ref|XP_002496309.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
 gi|238939200|emb|CAR27376.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
          Length = 1427

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 173/769 (22%), Positives = 291/769 (37%), Gaps = 58/769 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT----------DGES----------- 39
           M+ + +++   ++  Q +  L+ + KRP  YIG            D ES           
Sbjct: 1   MTVDNKSA---SERYQKITQLEHILKRPDTYIGSVEVQESHQWIYDEESDSMVEKEVSIV 57

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++ +  S  V ++G+GIP ++H +E I   
Sbjct: 58  PGLFKIFDEILVNAADNKVRDPSMKKIEVNIDSEANSIDVKNDGKGIPIEIHNKENIYIP 117

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGI 154
           E+I   L     ++    KV+GG +G G  + N  S    +       GN Y   + N +
Sbjct: 118 ELIFGHLLTSSNYDDDEKKVTGGRNGFGAKLCNIFSVEFIVETADPGSGNKYVQRWENNM 177

Query: 155 -LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ---ISL 210
            + +P  +T      + T+++F P    F+++  + DTL    R +  +N SV+   + L
Sbjct: 178 GVCHPPKITSYKKGPSYTKISFKPDLKRFNMETLDNDTLGVMRRRVYDVNGSVRDINVYL 237

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR--IQGSRDNISIDLAMRWNDG 268
             K                      +     P         I   R N   ++A+  +D 
Sbjct: 238 NGKSLKIKTFKNYVELYTKSLERKRIAEGLAPEGSDGKSPPILYERVNDCWEIALATSDM 297

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
             + +  F N+I    GGTH++ +   + R+IT  + K       K++V     +     
Sbjct: 298 SFQQI-SFVNSIATTTGGTHVNYISDQIVRKITEMLRKQ------KKTVKAHQVKNLMFL 350

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            ++  + +P FSSQTKE+L +       +  ++      + +  LEAK I+    + +  
Sbjct: 351 FINCLVENPAFSSQTKEQLTTRVKDFGSQCEISPEFIKKIMKSGLEAK-ILDLATENAHA 409

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGR 443
                  +    RK  +              R+  K  L L EGDSA      G A  GR
Sbjct: 410 TL----KKSDGTRKNRITDYPKLEDANKAGTREGHKCTLVLTEGDSALSLAVAGLAVVGR 465

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
                   PLRGK+LNV  A  D++  + EI  +   +G    +   D   LRY  ++IM
Sbjct: 466 D--YYGCYPLRGKMLNVREATVDQIQKNAEIQAIKKIMGLQHRKRYEDTKTLRYGHLMIM 523

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           TD D DG+HI+ L++ F     P L++  GFL     P+  +T  K  + V    ++ DY
Sbjct: 524 TDQDHDGSHIKGLIINFLDSSFPGLLNIPGFLVEFITPIVKVTITKPRREVISFYNMPDY 583

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +   EE   +   +         +  +       L +     H     EQ +I   F
Sbjct: 584 --EKWRDEESHRYKWKQKYYKGLGTSSGQEARQYFSDLDRHLKRFHALQEGEQDLIDLAF 641

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682
           + +   +       +           +E      IN   IL            VL+G   
Sbjct: 642 SKKKADDR-KEWLRQYEPGTVLDPRLTEIPISDFINKELILFSLADNIRSIPNVLDGFKP 700

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
                 Y     N   E  ++ L+           GP SL  TI  + +
Sbjct: 701 GQRKVIYGSFKRNITSEIKISTLANYVAEQTDYHHGPDSLAQTIIGLAQ 749


>gi|284027866|gb|ADB66753.1| DNA gyrase subunit beta [Aeromonas sp. 'CDC 2478-85']
 gi|284027868|gb|ADB66754.1| DNA gyrase subunit beta [Aeromonas sp. CECT 5178]
          Length = 371

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 230/374 (61%), Positives = 289/374 (77%), Gaps = 3/374 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL I+R+G++YE ++  G    PL   G A   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSILLADER--DGREVHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           ++ K P+ Q        +D I +++AM+WNDGY E V CFTNNIPQ+DGGTHL+G R+AL
Sbjct: 118 NQSKTPIHQKVFHFSADQDGIGVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLAGFRAAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKTSASGDDVREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + D L+ +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQAMADKLADFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSF 490
           LITALG GIG+D +
Sbjct: 358 LITALGCGIGRDEY 371


>gi|328773079|gb|EGF83116.1| hypothetical protein BATDEDRAFT_18312 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1218

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 136/586 (23%), Positives = 240/586 (40%), Gaps = 55/586 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDT----------DGES----------GLHHMIYEVLDNAID 54
            Q    L+ +  RP  YIG T          DGE           GL+ +  E++ NA D
Sbjct: 89  YQKKTQLEHILIRPDTYIGSTEFINTPLWVFDGERMVHRPISFVPGLYKIFDEIIVNAAD 148

Query: 55  ESLEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
             +     D I ++++ +  + +V +NGRGIP ++H +E I   E+I   L     ++  
Sbjct: 149 NKVRDPTMDTIKISIDREKNTISVYNNGRGIPIEIHAKEQIYVPELIFGHLLTSSNYDDD 208

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVTGSAGNDT 169
             KV+GG +G G  + N  S++  +     R G  ++  F N +       +T +   + 
Sbjct: 209 EKKVTGGRNGYGAKLCNIFSTYFMVETADSRSGRKFKQVFSNNMSSKTTPTITQNNKGED 268

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T++TF P  + F +   + D    L+ R  +L+     +++ L + R            
Sbjct: 269 FTQITFKPDLEKFKMTVIDDDFEALLKKRAYDLAGCVRGIKVFLNNTRIK---------I 319

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
              + +V     +  P       I   + N   ++A   +DG    V  F N+I    GG
Sbjct: 320 KDFKDYVDLYLDNVNPETGLKPPIVYEKLNDRWEIAYTPSDGQFNQV-SFANSICTSKGG 378

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH++ +   +   +   V+K     K    +     +      ++ ++ +P F SQTKE 
Sbjct: 379 THVNTIADQIVTGLMDQVKK---KDKKAVPLKPHQAKSHIWIFVNCQVENPTFDSQTKET 435

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL-TRRKGVL 405
           L         ++ +++          +    I+  ++  +  +      +   + +K  +
Sbjct: 436 LTLRTSAFGSKTPISEEFMK-----KVFRSGIIDTIMKFAKFKQDQLLKKTDGSGKKSRI 490

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVER 462
           +  +      +   ++  K  L L EGDSA   A  G S   R+N  + PLRGK+LNV  
Sbjct: 491 NGITKLDDANNAGTKNGGKCTLILTEGDSAKSLAVSGLSVVGRDNFGVFPLRGKLLNVRE 550

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A   ++  + EI  +   LG   G+   D + LRY  ++IMTD D DG+HI+ L++ F  
Sbjct: 551 ATHAQITGNAEISAIKQILGLQHGKVYEDASTLRYGHLMIMTDQDHDGSHIKGLIINFLD 610

Query: 523 RQMPS-LIHNGFLYIIKPPLYGITR----GKSLQYVKDEESLEDYL 563
              PS L   GFL     P+   T+     K           E + 
Sbjct: 611 HFWPSLLYIPGFLLEFITPIVRATKGKGHNKQEISFFTIPEFEQWK 656


>gi|317420220|emb|CBW30267.1| gyrase subunit B [Psychrobacter luti]
          Length = 383

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 224/386 (58%), Positives = 287/386 (74%), Gaps = 3/386 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L++ I REG  Y  ++ +G+ D  +     A + TGT++ F
Sbjct: 1   VSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYNDGVPDGDIQQ-MEATDQTGTQIRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS+D+F+   F YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FVSY
Sbjct: 60  YPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++  K  +      +    D IS+++A++W D Y+E VLCFTNNIPQ+DGGTHLSG RSA
Sbjct: 118 INAGKDGINDVFHFVSEQDDGISVEVALQWTDTYNEKVLCFTNNIPQRDGGTHLSGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY+++    KK+K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 LTRGLNSYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES ++D  + +L E+P   K I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLA
Sbjct: 238 VESAMHDKFNDYLLENPSTGKAIASKIIDAARARDAARKAREMTRRKTXLDIAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+G
Sbjct: 298 DCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVG 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKII 501
            LITALG GIG D ++ +K+RYHKII
Sbjct: 358 NLITALGCGIGPDEYNPDKVRYHKII 383


>gi|3021644|dbj|BAA25342.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 381

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 222/384 (57%), Positives = 291/384 (75%), Gaps = 3/384 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKVVGESE-TTGTQIHFRP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SDETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 QEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTL 357

Query: 478 ITALGTGIGQDSFDINKLRYHKII 501
           ITALG GIG+D ++I+KLRYH II
Sbjct: 358 ITALGCGIGRDEYNIDKLRYHNII 381


>gi|62633150|gb|AAX89533.1| DNA gyrase subunit B [Vibrio sp. CF6]
          Length = 378

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 225/379 (59%), Positives = 287/379 (75%), Gaps = 3/379 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GG     SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G  
Sbjct: 1   GGNSMNNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            ++TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y
Sbjct: 61  -DETGTEIRFWPSEETFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GGI+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+D
Sbjct: 119 EGGIQAFVEHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG HL+G R ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK
Sbjct: 179 GGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 299 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGT 483
           FDKMLSSQE+ TL TAL  
Sbjct: 359 FDKMLSSQEVVTLNTALAL 377


>gi|19912139|dbj|BAB88381.1| DNA gyrase subunit B [Cytophaga sp. MBIC04665]
          Length = 391

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 188/392 (47%), Positives = 253/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G   + TGTEVTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTLYPVKTVGET-DITGTEVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIE 230
           LP   IF     +NY+TL  R+REL++LN  + I+L DKR+ +        T     G+ 
Sbjct: 60  LPDKSIFQQTTEYNYETLATRMRELAYLNKGITITLTDKRNKDDEGNFIAETFHSNEGLS 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLD  + P++Q  I ++G ++ I +++AM +ND Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKYLDSTRTPVIQHVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S   K  K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADTSGLLKNVKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V + L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+ I  L
Sbjct: 240 EVTSAVSQAVAEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSIGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSETDPAVCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSF----DINKLRYH 498
           ++EI  + TALG  IG +      +++KLRYH
Sbjct: 360 NEEIKNMFTALGITIGTEEDPRALNLSKLRYH 391


>gi|116874216|gb|ABK30797.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 368

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 218/371 (58%), Positives = 284/371 (76%), Gaps = 4/371 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELIIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    Y+GGI+AFV 
Sbjct: 60  WPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+++K P+  +       +D I ++ A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 FLNKNKTPIHPNVFYFSTEKDGIGVEAALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGI 485
            TLITALG G+
Sbjct: 358 ATLITALGCGM 368


>gi|241955060|ref|XP_002420251.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
 gi|223643592|emb|CAX42474.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
          Length = 1461

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 150/712 (21%), Positives = 265/712 (37%), Gaps = 56/712 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +++ Q L  L+ + KRP  YIG  +                         GL+ +  E+L
Sbjct: 59  SETYQKLSQLEHILKRPDTYIGSVEKTKTEMWCFDADTESMVFKEVTIVPGLYKIFDEIL 118

Query: 50  DNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I V ++  +    V ++G+GIP ++H +E +   E+I   L    
Sbjct: 119 VNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPVEMHTKENMYIPELIFGNLLTSS 178

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFINGIL-DNPLVVTG 163
            ++    KV+GG +G G  + N  S+  ++    +   G +Y+ S+ N +   +   +T 
Sbjct: 179 NYDDNEKKVTGGRNGFGAKLCNIFSTQFEVETA-DLNMGKLYKQSWTNNMSNVSKPKITT 237

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                  T++TF P    F +   + D    L+ R+ +L     +  I L +KR      
Sbjct: 238 LKTKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNCNIYLNEKRLNISSF 297

Query: 221 ITM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
            +            S     +   +++   I     N   ++A   +DG    V  F N+
Sbjct: 298 KSYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFNDRWEVAFAVSDGSFNQV-SFVNS 356

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I    GGTH+  +   +  ++   + K     K K  +   + R+     ++  + +P F
Sbjct: 357 IATTSGGTHVKYVSDQIINKLVETLSK-KEKGKKKLMIKPQEVRDNMFLFINCLIENPAF 415

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           +SQTKE+L +   +       +  ++     + +    IV+K+   +   +     +   
Sbjct: 416 TSQTKEQLTTKVSQF---GGKDKFVANDNLINRILKTSIVEKIRAIANANEDKALQKADG 472

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGK 456
            RK  +              +D     L L EG SA   A  G S   R+     PLRGK
Sbjct: 473 SRKSRIKGQVNLVDANRAGTKDGHNCTLILTEGLSAMNLAVAGLSVVGRDYYGCFPLRGK 532

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADVDGAHIR 514
           +LNV  A  D++  + EI +L   +G    +     +I  LRY  I+IMTD D DG+HI+
Sbjct: 533 LLNVREASADQIAKNSEINSLKQIIGLQHKKVYTAENIKSLRYGHIMIMTDQDQDGSHIK 592

Query: 515 TLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRG------KSLQYVKDEESLEDYLINQS 567
            L++ F     P L+   GFL     P+  +T        K +         E +     
Sbjct: 593 GLIINFLETSFPGLLDIPGFLLEFITPIVKVTVRARGAGGKRVIPFYTMPEFEHWR---- 648

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
              E +    ++           ++       L +     H     ++  I   F+ +  
Sbjct: 649 -DTEGKQCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHALQGEDKNYIDLAFSKKKA 707

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
            E             +   E +E      IN   IL            VL+G
Sbjct: 708 DER-KEWLQGFLPGTHLDPEITEIPISDFINKELILFSMSDNVRSIPSVLDG 758


>gi|51571591|emb|CAH18962.1| gyrase B [Corallococcus coralloides]
          Length = 384

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 200/382 (52%), Positives = 267/382 (69%), Gaps = 3/382 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGV+ VN L+ W K+RI+R G ++E  +  G+ + P V  G   +  GT + F
Sbjct: 6   VSGGLHGVGVTCVNFLAEWFKVRIQRNGKVFEQGYARGVPNGPPVEVG-TTDKRGTMIHF 64

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P   I    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV Y
Sbjct: 65  KPDPTIMETADFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGIASFVEY 122

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L++ K  L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG +SA
Sbjct: 123 LNKAKTALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKSA 182

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +
Sbjct: 183 LTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGL 242

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VND L+++LEE+P  AK +V K+ DA     AAR+AR+  RRKGVLD   LPGKLA
Sbjct: 243 VEQMVNDQLASFLEENPPLAKKVVAKIGDACRAGIAARKARETVRRKGVLDGGGLPGKLA 302

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI 
Sbjct: 303 DCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIV 362

Query: 476 TLITALGTGIGQDSFDINKLRY 497
           TLITALGTGI  + +D  K RY
Sbjct: 363 TLITALGTGIVGEDYDPEKARY 384


>gi|86169565|gb|ABC87022.1| DNA gyrase subunit B [Leuconostoc pseudomesenteroides KCTC 3652]
          Length = 393

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 182/394 (46%), Positives = 263/394 (66%), Gaps = 3/394 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDT 169
              YKVSGGLHGVG SVVNALS+ L +R+ R+  +Y M F  G ++ P+   T     + 
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTDLDVRVVRDNTVYYMDFKVGRVNTPMKQLTEKPTIER 60

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F P +DIF     +NY+TL  R+REL+FLN  ++IS+ D R  E    +  ++GG
Sbjct: 61  GTIVHFKPDADIFRETTVYNYNTLLTRVRELAFLNKGLRISITDNRPEEAVSESFHFEGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ +VSYL++ K  +   P+ ++G  + I ++ A+++     +N+  FTNNI   +GGTH
Sbjct: 121 IKEYVSYLNKDKTAIFPEPVYVEGEENGIVVEAALQYTTDIKDNLRTFTNNINTYEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ALTR I  Y  K+   K +  S+ G+D REG T+++SIK PDP+F  QTK KL 
Sbjct: 181 ETGFKTALTRVINDYARKNGQLKDNAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +S+ R   +   ++  S ++ E+P  AK IV+K + A   R AA+RAR++TR++  L+I 
Sbjct: 241 NSDARQATDRMFSETFSRFMMENPAVAKQIVEKGVLAQKARLAAKRAREMTRKQSGLEIG 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLAD +  DP+ SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNV +A  D++
Sbjct: 301 NLPGKLADNTSNDPEISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVGKASLDRV 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L+++EI +L TA+GTG G D F++ K  YHK+II
Sbjct: 361 LANEEIRSLFTAMGTGFG-DDFNVEKANYHKVII 393


>gi|84310522|gb|ABC55409.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 185/392 (47%), Positives = 268/392 (68%), Gaps = 3/392 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YK   GLHGV  SVVNALS+ L + + R+G I+  ++  G+    L + G   + TG
Sbjct: 1   GSGYKYPAGLHGVSASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F+P  +IF    +++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +++V YL+R K+ + + PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH 
Sbjct: 120 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ LTR I  Y  K    K++  ++ GDD REG T+++SIK PDP+F  QTK KL +
Sbjct: 180 AGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE R++ ++  +  +  ++ E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++
Sbjct: 240 SEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISN 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L
Sbjct: 300 LPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKIL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+ E+ ++ITALG G G+D F++ K R  K++
Sbjct: 360 SNNEVRSMITALGPGSGED-FNLEKARCPKVV 390


>gi|111305596|gb|AAI21351.1| LOC779457 protein [Xenopus (Silurana) tropicalis]
          Length = 757

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 146/741 (19%), Positives = 276/741 (37%), Gaps = 87/741 (11%)

Query: 3   DNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES---------------- 39
           +   N+  D+          Q    L+ +  RP  YIG  +  +                
Sbjct: 33  ETESNNKNDSSKKMSVERVYQKKTQLEHILLRPDTYIGSVETVTQSMWVYDEDVGMNCRD 92

Query: 40  -----GLHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEG 92
                GL+ +  E+L NA D        + I ++++ D    ++ +NG+GIP   HK E 
Sbjct: 93  ITYVPGLYKIFDEILVNAADNKQRDKNMNCIKISIDPDSNIISIWNNGKGIPVVEHKVEK 152

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSF 150
           +    +I  +L     ++ +  KV+GG +G G  + N  S+   +    +   +  + ++
Sbjct: 153 MYVPALIFGQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTW 212

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQ 207
            N +L            D  T +TF P    F ++  + DT+     R  +++     V+
Sbjct: 213 TNNMLKTTEPKIKHFDGDDYTCITFQPDLAKFQMEKLDKDTVALLTRRAYDIAGSCKGVK 272

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           + L  K+             G  ++V    + +       +++     N   D+ +  ++
Sbjct: 273 VLLNGKK---------LPVNGFRSYVDLYVKDRLDETGVALKVIHEVANERWDVCLTLSE 323

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GG H+  +   +  ++   V+K   +     SV     +    
Sbjct: 324 KGFQQI-SFVNSIATTKGGRHVDYVVDQIVSKLIEVVKKKNKAG---VSVKPFQVKNHVW 379

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F SQTKE + + + +            +    +    + I+  V   + 
Sbjct: 380 VFVNCLIENPTFDSQTKENM-TLQPKGFGSKCQLSEKFSKAASNCGIVESILNWVKFKAQ 438

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
                   +  + +   +          D   +      L L EGDSA      G    G
Sbjct: 439 ---TQLNKKCSSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIG 495

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHK 499
           R R    + PLRGKILNV  A   +++ + EI  +I  +G    +   D      LRY K
Sbjct: 496 RDR--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDNESLKTLRYGK 553

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           I+IMTD D DG+HI+ LL+ FF    PSL+ + FL     P+   T+ K           
Sbjct: 554 IMIMTDQDQDGSHIKGLLINFFHHNWPSLLKHSFLEEFITPIVKATKNKQELSFYSIPEF 613

Query: 560 EDYLIN-QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
           E++    ++       +    G  +  + + +  D  +   + +   P       + A I
Sbjct: 614 EEWKKQTENQKLWKIKYYKGLGTSTSKEAKEYFADMDRHRIIFRYAGPE------DDAAI 667

Query: 619 SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           +  F+ +   +    L        NF+ ++ ++  HG       L ++   G   + +  
Sbjct: 668 TLAFSKKKVDDRKEWLT-------NFMEDRRQRRLHG-------LPEQFLYGTATKHLTY 713

Query: 679 GSSIFSFGSKYKRIFSNRIEE 699
              I     K   +FSN   E
Sbjct: 714 NDFIN----KELILFSNSDNE 730


>gi|308153106|dbj|BAJ22142.1| DNA gyrase subunit B [Actinokineospora riparia]
          Length = 403

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 180/405 (44%), Positives = 263/405 (64%), Gaps = 15/405 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  +KR+G ++  S+      + +   G A  + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLEAVVKRDGYVWTQSYAASQPVDSVAR-GEATRELG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP------------ 218
           T +TF P  +IF    FN +T+  RL+E++FLN  + I L D+R  E             
Sbjct: 60  TSITFWPDPEIFETTTFNAETVARRLQEMAFLNKGLTIVLRDERVSEDEAAADVDGQAAR 119

Query: 219 -REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
            +E T  Y GG+E FV +++  ++P+ +  I  +     + +++AM+WN GY E+V  F 
Sbjct: 120 VKERTYHYPGGLEDFVKHINHTREPIHKKVIAFEAKGTGVEVEVAMQWNTGYSESVYTFA 179

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G R+ALTR +  Y  +    K+   ++ GDD REG  +++SIK+ +P
Sbjct: 180 NTINTPEGGTHEEGFRAALTRVVNVYAREKKLLKEKDANLSGDDVREGLAAIVSIKLAEP 239

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK+KL ++E ++ V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+
Sbjct: 240 QFEGQTKQKLGNTEAKTFVQQTCNEWLADWFERNPSDAKTIVTKAVSSAQARMAARKARE 299

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           L RRKG LDI  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR    QAILP+RGKI
Sbjct: 300 LVRRKGALDIGGLPGKLKDCRSTNPEECELYIVEGDSAGGSAKEGRESLFQAILPIRGKI 359

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +NVE+AR D++L + E+ +LITALGTGI Q+ FD+ KLRYHKI++
Sbjct: 360 INVEKARIDRVLKNTEVQSLITALGTGI-QEDFDVTKLRYHKIVL 403


>gi|6644324|gb|AAF21009.1|AF208258_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 386

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 225/389 (57%), Positives = 289/389 (74%), Gaps = 3/389 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I + LAM+WND Y E V C TNNI  +DGGT+L G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVKLAMQWNDAYQEGVYCLTNNILHRDGGTYLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SS+E+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSREVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTD 505
           LITALG GIG+D ++ +K+R  +    TD
Sbjct: 358 LITALGCGIGRDEYNPDKMRVSQHHHHTD 386


>gi|19912095|dbj|BAB88359.1| DNA gyrase subunit B [Cytophaga sp. T-551]
          Length = 391

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 188/392 (47%), Positives = 253/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  LK  + REG I+E  +  G    P+   G   + TGTEVTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTLYPVKTVGET-DITGTEVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIE 230
           LP   IF     +NY+TL  R+REL++LN  + I+L DKR+ +        T     G+ 
Sbjct: 60  LPDKSIFQQTTEYNYETLATRMRELAYLNKGITITLTDKRNKDDEGNFIAETFHSNEGLS 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLD  + P++Q  I ++G ++ I +++AM +ND Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKYLDSTRTPVIQHVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S   K  K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTGTLKKYADTSGLLKNVKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V + L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+ I  L
Sbjct: 240 EVTSAVSQAVAEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSIGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE DP   E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSETDPAVCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSF----DINKLRYH 498
           ++EI  + TALG  IG +      +++KLRYH
Sbjct: 360 NEEIKNMFTALGITIGTEEDPRALNLSKLRYH 391


>gi|197295747|gb|ACH58586.1| gyrase subunit B [Methylobacterium fujisawaense]
          Length = 388

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 236/388 (60%), Positives = 296/388 (76%), Gaps = 7/388 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALSSWL+LRI R    + M F +G    PL V G      GTEV+FLP
Sbjct: 1   GGLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVVGPGNGRRGTEVSFLP 60

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y+GGIEAFV YLD
Sbjct: 61  STETFTMIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYEGGIEAFVRYLD 120

Query: 238 RHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           R +KP+  M SP+ +   RD I +++A  WND ++E VL FTNNIPQ+DGGTH++G R+A
Sbjct: 121 RSRKPIDGMTSPVVVSSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+T Y E S  +KK+K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  
Sbjct: 181 LTRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPA 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLA
Sbjct: 241 VENVLNEGLSTWLEENPSQARSVMAKVVLAASAREAARKARETVTRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS EIG
Sbjct: 301 DCQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIG 360

Query: 476 TLITALGTGIGQDS-----FDINKLRYH 498
           TLITALG GIG+ S     F+  KLRYH
Sbjct: 361 TLITALGAGIGRSSTDREGFNPEKLRYH 388


>gi|317420228|emb|CBW30271.1| gyrase subunit B [Psychrobacter arcticus]
          Length = 382

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 220/384 (57%), Positives = 287/384 (74%), Gaps = 3/384 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L++ I REG  +  ++ +G+ D+ +     A + TGT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSKKLEMNIWREGYHHHQTYTDGVPDSDIQQ-MEATDQTGTQIRFY 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS+D+F+   F YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FVSY+
Sbjct: 60  PSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSYI 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +  K  +      I    D IS+++A++W D Y+E V CFTNNIPQ+DGGTHLSG RSAL
Sbjct: 118 NAGKDGINDVFHFISNQEDGISVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+++    KK+K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 178 TRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES ++D  + +L+E+P   K+I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLAD
Sbjct: 238 ESAMHDKFNDYLQENPSAGKLIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGRSR+ QAI PL+GKILNVERARFDKMLSSQE+G 
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAIFPLKGKILNVERARFDKMLSSQEVGN 357

Query: 477 LITALGTGIGQDSFDINKLRYHKI 500
           LITALG GIG D ++ +K+RYHKI
Sbjct: 358 LITALGCGIGPDEYNPDKVRYHKI 381


>gi|156538202|ref|XP_001601580.1| PREDICTED: similar to topoisomerase II [Nasonia vitripennis]
          Length = 1510

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 140/744 (18%), Positives = 259/744 (34%), Gaps = 74/744 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +  +                      GL+ +  E+L NA
Sbjct: 26  YQKKTQLEHILLRPDTYIGSVEPVTELMWIYDKEKEMMIQKEIKYVPGLYKIFDEILVNA 85

Query: 53  IDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        D I + ++  + + +V +NG+GIP  +HKEE +    +I   L     ++
Sbjct: 86  ADNKQRDPKMDSIKIDIDAENNTISVWNNGKGIPVVIHKEENMYVPTMIFGHLLTSSNYD 145

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY----EMSFINGILDNPLVVTGSAG 166
               KV+GG +G G  + N  S    +        Y    + ++ N +            
Sbjct: 146 DAEEKVTGGRNGYGAKLCNIFSHRFTVETA--CKEYKKSLKQTWGNNMGKASEAKIKEFH 203

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            +  T+VTF P    F ++  + D +    R          I+   +        T    
Sbjct: 204 GEDFTKVTFSPDLSKFKMEKLDEDVVALMSRRAYD------IAASSRGVKVFLNGTRVPV 257

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
              + +V    + K+    +P++I         ++A+  +D      + F N+I    GG
Sbjct: 258 KSFKDYVDLYIKGKEDDTGNPLKITYENCGPRWEVAITLSDK-GFQQMSFVNSIATTKGG 316

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   + +Q+   ++K   +      +     +      ++  + +P F SQTKE 
Sbjct: 317 RHVDHVTDMVVKQLIETLKKKNKAGVQ---IKPFQIKNHLWVFINCLINNPTFDSQTKEN 373

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV-L 405
           +   +     +  +++     + +       IV+ VL  +  +  ++  +   + K   L
Sbjct: 374 MTLQQKSFGSKCTLSEKFITNVTKSG-----IVESVLSWAKFKADSQLQKLGPKSKQRKL 428

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNV 460
                     D          L L EGDSA      G A  GR +    + PL+GKILNV
Sbjct: 429 QGIPKLEDANDAGTARSLDCTLILTEGDSAKSMAVSGIASIGRDK--YGVFPLKGKILNV 486

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLL 517
             A   ++L + EI  LI  LG    +     +    LRY KI+IMTD D DG+HI+ LL
Sbjct: 487 REATHKQILENAEINNLIKILGLQYKKKYETRDDLKTLRYGKIMIMTDQDQDGSHIKGLL 546

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           + F     PSL+   F+     P+    +G  +         E +          ++   
Sbjct: 547 INFIHHNWPSLLKLNFIEEFITPIVKARKGNHVLSFFSLPEFEAWKKETENFHTYKIKYY 606

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                S          A +  +  ++   +  +   +  V          ++        
Sbjct: 607 KGLGTS---------TAQEAKEYFENMARHRIRFRYDGDVDDQNIIMAFSKKCVDQRKDW 657

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L N +     + E            L ++  R V     +    +        R   N +
Sbjct: 658 LTNHMEETKRRKEIGLG-----ERYLYEKDTRAVSFSDFINVELVLFSNYDNIRSIPNMM 712

Query: 698 EENYLTILSLI----CNGDKIKIT 717
           +        ++       DK ++ 
Sbjct: 713 DGLKPGQRKVLFTCFKRNDKREVK 736


>gi|18369822|dbj|BAB84106.1| DNA topoisomerase II [Talaromyces flavus var. flavus]
          Length = 1094

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 142/689 (20%), Positives = 257/689 (37%), Gaps = 54/689 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTD----------------------GESGLHHMIYEVL 49
           +D  Q L   + + KRP  YIG T+                         GL+ +  E++
Sbjct: 1   SDKYQKLSPREHIIKRPDTYIGSTEMTPQQMWVYSSATEGMEFREVTYVPGLYKIFDEIV 60

Query: 50  DNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D        D I VT++ + G  +V +NGRGIP ++H +E I   E+I   L    
Sbjct: 61  VNAADNKQNDKNMDEIRVTIDRESGVISVWNNGRGIPIEMHAKEKIYVPELIFGHLLTSS 120

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSA 165
            ++    KV+GG +G G  + N  S+   L  +   +   Y+ ++ + +          A
Sbjct: 121 NYDDTQQKVTGGRNGYGAKLCNVFSTEFILETQDSHQKKRYKQTWTDNMTKVGKAKITEA 180

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             +  T+VTF P    F +   + D      R +  L  + ++++    S  P      Y
Sbjct: 181 KGEDFTKVTFKPDYAKFGMTGIDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPIRNFKKY 240

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                  +        P  +    I     +   ++    +DG  + V  F N+I    G
Sbjct: 241 MEMYTKAIRRERGDDGPAPKDE--IITCSPDPRWEVGFAVSDGSFQQV-SFVNSIATTSG 297

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++ +   +  ++ + ++K   +     ++     R      ++  + +P F+SQTKE
Sbjct: 298 GTHVNYIADQICGRLATELKKKNKNG---ATLKPAQLRNHIFIFVNALIVNPAFTSQTKE 354

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           +L + + +   +  + D     + +  + + I+      A  +       R        L
Sbjct: 355 QLTTKQTQFGSKCPLEDDFYKKILKTNVMSNILSFAAHKADQMLKKTDGGRRSRMNNPKL 414

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVER 462
             A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV  
Sbjct: 415 TDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRD 468

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A F+++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ F  
Sbjct: 469 ASFEQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQ 528

Query: 523 RQMPSLIHNGFLYI-IKPPLYGI-----TRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
            Q PSL+      I    P+  +                    E +            + 
Sbjct: 529 AQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTRQHSFFTMPEYEAFREAHKNERWEHKYY 588

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              G  +  D + +  D       +             +A +  +   +   +       
Sbjct: 589 KGLGTSTTEDAQVYFRD-------LDRHLKEFHTIQDNEAALIELAFSKKKADERKEWLR 641

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVK 665
           +           S+ ++   IN   IL  
Sbjct: 642 QFRPGTYLDHTLSKITYTDFINKELILFS 670


>gi|38224356|gb|AAR14132.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp. necrophorum]
          Length = 404

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 178/403 (44%), Positives = 260/403 (64%), Gaps = 3/403 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGND 168
             +YKVSGGLHGVG+SVVNALS W ++++KREGN+Y   ++ G     + +      G  
Sbjct: 2   NDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGET 61

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  +IF    F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +  ++GG
Sbjct: 62  TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGG 121

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  F+  + R  + L+   I I+G  + + +D+A  +  G  E +  F NNI   +G   
Sbjct: 122 ISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEVIYSFVNNINTTEGRLS 181

Query: 289 LSGLRSALTRQITSYVEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
              + +  T+ +   +EKS    K+   +       +    ++S+K+P P+F  QTK KL
Sbjct: 182 CDWISNLFTKGLLMILEKSQGFLKEKMENYKEATFGKELWLIISVKVPQPQFEGQTKTKL 241

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SEV  +V + ++  L  +LE++P + K+I++K+L +   R+AA+RAR+   RK VL++
Sbjct: 242 GNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSVLEV 301

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            SLPGKLADCS + P++ E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K
Sbjct: 302 GSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHK 361

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            L S EI  ++TA GT IG++SFD+ KLRY KII+MTDADVDG
Sbjct: 362 ALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 404


>gi|148971313|gb|ABR20194.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 434

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 191/438 (43%), Positives = 263/438 (60%), Gaps = 21/438 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++K YK++GGLHGVGV VVNALS  L   +KR   IY   F  G+  
Sbjct: 1   EVIMTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSRLLIAVVKRPEGIYYEKFEKGVPS 60

Query: 157 NPLVVTGSAGNDT-----------------GTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
             L                           G  + F P  +I             R++EL
Sbjct: 61  GGLQFVEKGSWGNTGEPEIDSIEPKLAQDHGLIIKFYPDPEILRTLISLTRWSIERIKEL 120

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           +FLN  V IS+ D+R      +    +GG+  FV YL    + +++ PI      ++  +
Sbjct: 121 AFLNPQVAISIKDERINASEVMHF--EGGLSQFVDYLGEGHQSILKEPIYNLEETEDTVV 178

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           + A  +N+   E +  + NNI   +GGTH++G R+ L+R +  Y  K+    K   S++ 
Sbjct: 179 EFAFLYNNSTSEIMQSYVNNISTVEGGTHVTGFRAGLSRAVQDYA-KNHDLVKGVESIVS 237

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +VL +K+  P+F  QTK KL +S VR +V+S       ++ E  P  A+ IV
Sbjct: 238 DDVREGLVAVLHVKVIAPQFEGQTKSKLGNSTVRGIVQSSTEKYFKSYFESFPNIAQNIV 297

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           ++V+ A+  R+A+R A++L RRK  L+  +LPGKLADCS  DP K+EL++VEG+SAGGSA
Sbjct: 298 RRVIMAAAAREASRNAKELVRRKSALESGNLPGKLADCSSSDPAKAELYIVEGESAGGSA 357

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQ R+R+ QAILPLRGKILNVE+A   K L+++EI  LIT +GT I +DS D++KLRY K
Sbjct: 358 KQARTRDYQAILPLRGKILNVEKAADIKTLANEEIRNLITVMGTNI-KDSLDLSKLRYGK 416

Query: 500 IIIMTDADVDGAHIRTLL 517
           IIIMTDADVDG+HIRTLL
Sbjct: 417 IIIMTDADVDGSHIRTLL 434


>gi|3021624|dbj|BAA25332.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 381

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 218/384 (56%), Positives = 290/384 (75%), Gaps = 3/384 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLAAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +    S +L E+P EAK++V K++DA+  R+AAR+ R++TRRKG LDIA LPGKLADC
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKTREMTRRKGALDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 QEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTL 357

Query: 478 ITALGTGIGQDSFDINKLRYHKII 501
           ITALG GIG++ ++I+KLRYH II
Sbjct: 358 ITALGCGIGREEYNIDKLRYHNII 381


>gi|329942345|ref|ZP_08291155.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Chlamydophila psittaci Cal10]
 gi|332286986|ref|YP_004421887.1| DNA topoisomerase IV subunit B [Chlamydophila psittaci 6BC]
 gi|313847583|emb|CBY16571.1| putative DNA gyrase subunit b or topoisomerase IV subunit b
           [Chlamydophila psittaci RD1]
 gi|325506566|gb|ADZ18204.1| DNA topoisomerase IV subunit B [Chlamydophila psittaci 6BC]
 gi|328815255|gb|EGF85243.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Chlamydophila psittaci Cal10]
 gi|328914217|gb|AEB55050.1| DNA topoisomerase II domain protein [Chlamydophila psittaci 6BC]
          Length = 602

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 159/606 (26%), Positives = 267/606 (44%), Gaps = 53/606 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           ++Y   S+  L  L+ ++ R  MYIG     S    G++ +  EV+DNAIDE + GY   
Sbjct: 2   ATYTEASVVSLASLEHIRLRAGMYIGRLGDGSQVEDGIYTLFKEVVDNAIDEFIMGYGKT 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLH 121
           I++    D + TV D+GRGIP             +I     ++ G K+ Q  +  S GL+
Sbjct: 62  ISI-FTDDSTITVRDSGRGIPLGK----------MIDCVSKINTGAKYTQDVFHFSVGLN 110

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+  VNALS    +R  R+   +  +F  G+L +     GS  +  GTE+TF P   I
Sbjct: 111 GVGLKAVNALSEKFTVRSVRKKKYHYATFYKGVLQD--SRQGSTKDPDGTEITFSPDPTI 168

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+   FN + L+ ++R  ++L+  ++I   ++            + G+          + 
Sbjct: 169 FTNFAFNDEFLRKKIRRYTYLHPGLEIICNNEV--------FISQQGLLDLFKEEIPEET 220

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
                         N  +       + + E    F N     DGG+HL+  + A+ + I 
Sbjct: 221 LYPPIAF------QNSELSFLFSHLETHSERYFSFVNGQETLDGGSHLAAFKEAVVKGIN 274

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+            +D REG    ++IK+  P F SQTK KL ++++RS +   V 
Sbjct: 275 EYFGKN---------FTSNDIREGIVGCIAIKIASPIFESQTKNKLGNTQIRSGIIKEVK 325

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR-----ARDLTRRKGVLDIASLPGKLAD 416
             +   L+++   + ++++K+      R   +           +    +          +
Sbjct: 326 SAIIQELKKNKSRSDLLLEKIKLNEKTRKNIQFIKQDLKDKQKKLHYKIPKLRDCKFHYN 385

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
                 + S +F+ EG+SA  S    R+   QA+  LRGK +NV     +KM  + E+  
Sbjct: 386 ERSLYGEASSIFVTEGESASASILSSRNPLTQAVFSLRGKPMNVFSLEEEKMYKNDELFY 445

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TALG            LRY+KII+ TDADVDG HIR LL+TFF +   S++ N  L+I
Sbjct: 446 LATALGITKNSTQH----LRYNKIILATDADVDGMHIRNLLITFFLKTFLSVVENQHLFI 501

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDDA 594
           ++ PL+ +    +  Y   ++     +      E           G IS  + + FI   
Sbjct: 502 LETPLFKVRYKDTTLYCYSDQEKTQAIQKLGKKEAHIEVTRFKGLGEISPKEFKTFIGAD 561

Query: 595 LKIDKL 600
           +++  +
Sbjct: 562 MRLTPV 567


>gi|163256301|dbj|BAF95661.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3A]
          Length = 270

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 156/269 (57%), Positives = 193/269 (71%)

Query: 45  IYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           +YEV+DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LH
Sbjct: 1   VYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLH 60

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G 
Sbjct: 61  AGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGD 120

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           A    GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M 
Sbjct: 121 APGRRGTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMH 180

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+D
Sbjct: 181 YSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRD 240

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           GGTHL+G R ALTRQ+  Y E +   +K 
Sbjct: 241 GGTHLAGFRGALTRQVNGYAEANAKKEKI 269


>gi|149040009|gb|EDL94093.1| similar to topoisomerase (DNA) II beta [Rattus norvegicus]
          Length = 733

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 142/722 (19%), Positives = 269/722 (37%), Gaps = 80/722 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 43  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 102

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 103 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 162

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 163 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 222

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 223 YTCITFQPDLAKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 273

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 274 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 332

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 333 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 389

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 390 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 445

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 446 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 503

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 504 EASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLI 563

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCD 577
            F     PSL+ +GFL     P+   ++ K           +++  +    +     +  
Sbjct: 564 NFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 623

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L   
Sbjct: 624 GLGTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT-- 675

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++  HG       L ++   G   + +     I     K   +FSN  
Sbjct: 676 -----NFMEDRRQRRLHG-------LPEQFLYGTATKHLTYNDFIN----KELILFSNSD 719

Query: 698 EE 699
            E
Sbjct: 720 NE 721


>gi|66474563|gb|AAY46851.1| GyrB [Aeromonas bestiarum]
          Length = 372

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 218/374 (58%), Positives = 283/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+  ++ +K
Sbjct: 359 LGCGIGRAEYNPDK 372


>gi|308153144|dbj|BAJ22161.1| DNA gyrase subunit B [Saccharopolyspora hordei]
          Length = 403

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 176/405 (43%), Positives = 254/405 (62%), Gaps = 16/405 (3%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y VSGGLHGVGVSVVNALS+ L+  I   G ++   + +     P+   G   + TGT
Sbjct: 1   GAYAVSGGLHGVGVSVVNALSTALEAEIHTGGYVWRQRYEDSKPVAPVER-GEKTDKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI---------- 221
            +TF     +F    +N +T+  RL+E++FLN  + I L D+R  E  E           
Sbjct: 60  SITFWADPKVFETTRYNAETVARRLQEMAFLNKGLTIILRDERVAEEDEAGEDASGATAR 119

Query: 222 ----TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
               T  Y GG+E FV +++  K+P+ +  +    S +   +++AM+WN GY+++V  F 
Sbjct: 120 VKERTFHYPGGLEDFVRHINATKEPIHKKVVSFSASGEGHELEIAMQWNSGYNQSVYTFA 179

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G RSALTR + +Y       K    ++ GDD REG  +++S+K+ +P
Sbjct: 180 NTINTHEGGTHEEGFRSALTRVVNAYARDKRLIKDKDGNLTGDDVREGLAAIVSVKVREP 239

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL ++EV+S V++   + L+ W E +P EAK+IV K + ++  R AAR+A++
Sbjct: 240 QFEGQTKTKLGNTEVKSFVQTTAFEWLTDWFERNPAEAKVIVNKAVSSAQARVAARKAKE 299

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           L RRK  +DI  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    QAILPLRGKI
Sbjct: 300 LVRRKSAMDIGGLPGKLKDCQSNNPDECELYIVEGDSAGGSAKEGRESRFQAILPLRGKI 359

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +NVE+AR DK+L + E+  +ITALGTGI  D FD++KLRYHKI++
Sbjct: 360 INVEKARIDKVLKNNEVQAIITALGTGI-HDEFDLSKLRYHKIVL 403


>gi|56675124|emb|CAI34864.1| DNA gyrase subunit B [Aeromonas sp. V130]
 gi|56675126|emb|CAI34865.1| DNA gyrase subunit B [Aeromonas sp. F553E]
 gi|56675128|emb|CAI34866.1| DNA gyrase subunit B [Aeromonas sp. V23]
 gi|56675130|emb|CAI34867.1| DNA gyrase subunit B [Aeromonas sp. V183]
          Length = 372

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|19912101|dbj|BAB88362.1| DNA gyrase subunit B [Cytophaga sp. I-1856]
          Length = 391

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 187/392 (47%), Positives = 252/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  LK  + R G IYE  +  G    P+   G   +  GT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSEHLKATVYRGGKIYEQEYERGKTLYPVKTIGDT-DKRGTTVTF 59

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIE 230
            P  +IF    +++YDTL  RLREL+FLN  + + LIDKR  +        T   + G+ 
Sbjct: 60  KPDPEIFQQTLEYSYDTLASRLRELAFLNKGITVHLIDKRHKKEDGSFEGETFHSEEGLT 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLD  ++PLM+  I  +G ++ I +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVRYLDATREPLMKDVIAFEGEKNGIPVEVAMVYNTSYAENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y ++S    K K  + GDD REG T+++S+K+ +P+F  Q K KL + 
Sbjct: 180 GFRRGLTHTLKKYADESGMLDKLKFDISGDDFREGLTAIVSVKVAEPQFEGQQKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L  +LEEHP +AK IV+KV+ A+  R AA++AR++ +RK V+ I  L
Sbjct: 240 EVSASVSQAVSEMLKDYLEEHPDDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMTHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSF----DINKLRYH 498
           ++EI  + TALG  IG +      +I+KLRYH
Sbjct: 360 NEEIKNIFTALGVTIGTEEDSKALNISKLRYH 391


>gi|163256311|dbj|BAF95666.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3F]
          Length = 275

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 162/277 (58%), Positives = 201/277 (72%), Gaps = 2/277 (0%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGK
Sbjct: 1   VDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGK 60

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A   
Sbjct: 61  FDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGR 120

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG
Sbjct: 121 RGTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGG 180

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTH
Sbjct: 181 VEEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTH 240

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           L+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG
Sbjct: 241 LAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREG 275


>gi|25006387|dbj|BAC24013.1| DNA topoisomerase II [Arthroderma otae]
          Length = 1087

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 144/696 (20%), Positives = 253/696 (36%), Gaps = 43/696 (6%)

Query: 14  SIQILKGLDAVKKRPSMYIGDT----------------------DGESGLHHMIYEVLDN 51
             Q +  L+ + KRP  YIG                            GL+ +  E+L N
Sbjct: 1   QYQKITQLEHILKRPDTYIGSVERTEKQMWVYNSTTELMEYREVSYVPGLYKIFDEILVN 60

Query: 52  AIDESLEG-YADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D        + I VTL+ +G   +V +NGRGIP ++H +E I   E+I   L     +
Sbjct: 61  AADNKQNDPNMNEIRVTLDKEGGEISVWNNGRGIPVEVHSKEKIYIPELIFGHLLTSSNY 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGN 167
           N +  KV+GG +G G  + N  S+   +     R    +++++ N +             
Sbjct: 121 NDQQEKVTGGRNGYGAKLCNIFSNEFTIETADSRTKKKFKLTWTNNMSAMGKPKITECKG 180

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           D  T+VTF P    F ++  + D      R +  +  +   ++    +  P +    Y  
Sbjct: 181 DDYTKVTFKPDFAKFGMEGMDDDFEALVKRRVYDMAGTCGTAVKLNGTKIPVKSFKKYME 240

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                +       +        I     +   ++    +DG  + V  F N+I    GGT
Sbjct: 241 MYTKAIKTERG--EDPTSDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGT 297

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++ +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L
Sbjct: 298 HVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNCQIVNPAFTSQTKEQL 354

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +   +   +  V+D     + +  +   I+      A  +       R        L  
Sbjct: 355 TTRSSQFGSKCIVSDEFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTD 414

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERAR 464
           A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV  A 
Sbjct: 415 ANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDAS 468

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +    
Sbjct: 469 VDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVA 528

Query: 525 MPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            P+L+   GFL     P+  + +G        +         +            K    
Sbjct: 529 FPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKETHAHDKKWQKKYYK 588

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                +  D  +    L K     H     E  +I   F+ +   E       +      
Sbjct: 589 GLGTSSTEDAQIYFQDLDKHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTY 647

Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                 + ++   IN   IL            V++G
Sbjct: 648 LDHSTEQITYSDFINKELILFSMADNIRSIPSVIDG 683


>gi|95108295|emb|CAK18169.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. achromogenes]
          Length = 372

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 283/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRRNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|146318411|ref|YP_001198123.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 05ZYH33]
 gi|145689217|gb|ABP89723.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 05ZYH33]
          Length = 241

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 122/244 (50%), Positives = 165/244 (67%), Gaps = 7/244 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHHM++E++DNA+DE+L G
Sbjct: 1   MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS +VSD GRG+P  +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLSVSDRGRGMPVGMHA-TGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177
           LHGVG SVVNALSSWL++ I R+G +Y+  F   G     L   G+A    TGT+VTF+P
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMP 178

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              IFS  DF ++T+  RL+E +FL   V ++L D+R+ E  +    Y  G++ +VSYL+
Sbjct: 179 DDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGE--QEEYHYDNGVQDYVSYLN 236

Query: 238 RHKK 241
             KK
Sbjct: 237 EDKK 240


>gi|198042674|gb|ACH81162.1| GyrB [Alteromonas sp. UST981101-023]
          Length = 346

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 204/348 (58%), Positives = 259/348 (74%), Gaps = 4/348 (1%)

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           IMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS LKLRI+R G  +E  + +G+   P
Sbjct: 1   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLKLRIRRAGKAHEQEYHHGVPQAP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           L VTG   + TGT + F PS+D F+   ++YD L  RLRELSFLNS V I L D+R  + 
Sbjct: 61  LAVTGDT-DKTGTMIRFWPSADTFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERDGKE 119

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFT 277
                 Y+GGI+AFV YL+  K P+ Q          D I++++AM+WND + ENV CFT
Sbjct: 120 --DHFMYEGGIQAFVEYLNEKKTPVHQKVFHFASEQEDGIAVEVAMQWNDSFQENVFCFT 177

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+PDP
Sbjct: 178 NNIPQRDGGTHLAGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDP 237

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEVR  VES +N+ L+ +L E+P E+KII  K++DA+  R+AAR+AR+
Sbjct: 238 KFSSQTKDKLVSSEVRPAVESAMNEKLADFLLENPAESKIIAGKIIDAARAREAARKARE 297

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R
Sbjct: 298 MTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNR 345


>gi|56675144|emb|CAI34874.1| DNA gyrase subunit B [Aeromonas sp. F713E]
 gi|62867460|emb|CAI79641.1| DNA gyrase subunit B [Aeromonas tecta]
 gi|62867462|emb|CAI79642.1| DNA gyrase subunit B [Aeromonas tecta]
 gi|62867464|emb|CAI79643.1| DNA gyrase subunit B [Aeromonas tecta]
 gi|62867466|emb|CAI79644.1| DNA gyrase subunit B [Aeromonas tecta]
 gi|62867468|emb|CAI79645.1| DNA gyrase subunit B [Aeromonas tecta]
          Length = 372

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 220/374 (58%), Positives = 284/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFSDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|23451162|gb|AAN32686.1| DNA gyrase subunit B [Aeromonas hydrophila]
 gi|31616507|gb|AAP47819.1| DNA gyrase B [Aeromonas salmonicida subsp. salmonicida]
 gi|56675116|emb|CAI34860.1| DNA gyrase subunit B [Aeromonas bestiarum]
 gi|56675118|emb|CAI34861.1| DNA gyrase subunit B [Aeromonas sp. V1]
 gi|56675120|emb|CAI34862.1| DNA gyrase subunit B [Aeromonas sp. V32]
 gi|56675122|emb|CAI34863.1| DNA gyrase subunit B [Aeromonas sp. V155]
 gi|56675132|emb|CAI34868.1| DNA gyrase subunit B [Aeromonas sp. F530D]
 gi|56675134|emb|CAI34869.1| DNA gyrase subunit B [Aeromonas sp. F666I]
 gi|66474559|gb|AAY46849.1| GyrB [Aeromonas bestiarum]
 gi|95108293|emb|CAK18168.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. masoucida]
          Length = 372

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|209863349|gb|ACI88774.1| DNA gyrase subunit B [Aeromonas sp. JH92]
 gi|209863351|gb|ACI88775.1| DNA gyrase subunit B [Aeromonas sp. JH85]
 gi|209863353|gb|ACI88776.1| DNA gyrase subunit B [Aeromonas sp. JH86]
          Length = 372

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 219/371 (59%), Positives = 282/371 (76%), Gaps = 2/371 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS 
Sbjct: 4   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSP 63

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++
Sbjct: 64  TIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQN 121

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR 
Sbjct: 122 KTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRT 181

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 182 LNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 241

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E
Sbjct: 242 MGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQE 301

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 302 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 361

Query: 480 ALGTGIGQDSF 490
           ALG GIG+D +
Sbjct: 362 ALGCGIGRDEY 372


>gi|210142364|dbj|BAG80973.1| DNA gyrase subunit B [Paenibacillus macquariensis subsp. defensor]
          Length = 389

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 197/393 (50%), Positives = 281/393 (71%), Gaps = 5/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVGVSVVNALS  + + +K +G+IY+  +  G+    + V G + ++ G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSEKVVVTVKVKGHIYQQEYRRGVPQYDVRVIGES-DEHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T VTF P  +IF+    ++Y TL  R+RE++FLN  + ++L D+R+     +   Y+GGI
Sbjct: 60  TTVTFHPDPEIFTETTVYDYGTLLTRVREIAFLNKGIALTLNDERADSS--VRFMYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + +V +L+  K+ L + PI ++GSRD + +++A+++ND Y EN+  F NNI   +GGTH 
Sbjct: 118 KEYVKFLNEKKEALHEEPIYVEGSRDMMQVEVALQYNDSYTENIYSFCNNINTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K    ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 SGFKSALTRIINDYARKTGVIKDSNSNLSGDDVREGLTAIISVKIPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR + ES  ++ L  +LEE+P  ++ I++K L AS  R+AAR+AR+LTRRK  L++++
Sbjct: 238 SEVRGIAESLFSEKLQEFLEENPAVSRRILEKGLQASRAREAARKARELTRRKSALEVSA 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L
Sbjct: 298 LPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRIL 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITA+GTGIG+D FD++K RYHK+II
Sbjct: 358 SNAEIRNMITAMGTGIGED-FDLSKARYHKVII 389


>gi|156071392|dbj|BAF75803.1| DNA gyrase subunit B [Bradyrhizobium betae]
          Length = 278

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 163/279 (58%), Positives = 203/279 (72%), Gaps = 2/279 (0%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGK
Sbjct: 1   VDNAIDEALAGHATRVDVILNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGK 60

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PLVV G A   
Sbjct: 61  FDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPGR 120

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEVTF  S++ F   ++++ TL+HRLREL+FLNS V I+L D R    +   M Y GG
Sbjct: 121 RGTEVTFQASTETFKNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREEMHYSGG 180

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTH
Sbjct: 181 VEEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTH 240

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           L+G R ALTRQ+  Y E    +KK+K ++ GDDCREG T
Sbjct: 241 LAGFRGALTRQVNGYAEAH--AKKEKIALTGDDCREGLT 277


>gi|209863347|gb|ACI88773.1| DNA gyrase subunit B [Aeromonas sp. JH79]
          Length = 371

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 219/371 (59%), Positives = 282/371 (76%), Gaps = 2/371 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS 
Sbjct: 3   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSP 62

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++
Sbjct: 63  TIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQN 120

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR 
Sbjct: 121 KTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRT 180

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 181 LNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 240

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E
Sbjct: 241 MGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQE 300

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 301 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 360

Query: 480 ALGTGIGQDSF 490
           ALG GIG+D +
Sbjct: 361 ALGCGIGRDEY 371


>gi|25006383|dbj|BAC24011.1| DNA topoisomerase II [Trichophyton interdigitale]
          Length = 1093

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 142/681 (20%), Positives = 248/681 (36%), Gaps = 41/681 (6%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q +  L+ + KRP  YIG  +                         GL+ +  E+L NA
Sbjct: 1   YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 60

Query: 53  IDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D          I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N
Sbjct: 61  ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   +     ++   +++++ N +             D
Sbjct: 121 DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGD 180

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
             T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y   
Sbjct: 181 DYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEM 240

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
               +                I     +   ++    +DG  + V  F N+I    GGTH
Sbjct: 241 YTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTH 299

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++ +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L 
Sbjct: 300 VNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLT 356

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +   +   +  V+D     + +  +   I+      A  +       R        L  A
Sbjct: 357 TRASQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDA 416

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARF 465
           +  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  
Sbjct: 417 NKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASV 470

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     
Sbjct: 471 DQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAF 530

Query: 526 PSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           P+L+   GFL     P+  + +G        +         +            K     
Sbjct: 531 PTLLKIPGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYKG 590

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
               +  D  +    L +     H     E  +I   F+ +   E       +       
Sbjct: 591 LGTSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYL 649

Query: 645 IAEKSEKSWHGSINNSDILVK 665
                + ++   IN   IL  
Sbjct: 650 DHSTDQITYTDFINKELILFS 670


>gi|203366781|gb|ACH98383.1| DNA gyrase B subunit [Geitlerinema sp. PCC 7105]
          Length = 374

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 166/373 (44%), Positives = 244/373 (65%), Gaps = 8/373 (2%)

Query: 45  IYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           +YEV+DN++DE+L GY   I + +N DGS +V+D+GRGIPT++H + G SA E ++T LH
Sbjct: 1   VYEVVDNSVDEALAGYCTHIEIDINADGSVSVTDDGRGIPTEVHSKTGRSALETVLTVLH 60

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-VTG 163
           AGGKF    YKVSGGLHGVGVSVVNALS W+++ + RE  ++   +  G     L     
Sbjct: 61  AGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWREKKVHTQRYERGKPVEDLKTKPS 120

Query: 164 SAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPE 217
                TGT V FLP  DIF+   +F+Y T+  R+REL++LN+ V+I+  D R     + E
Sbjct: 121 PDKKRTGTSVRFLPDRDIFTTGIEFDYTTIAGRIRELAYLNAGVRITFTDNRLEFLGTTE 180

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCF 276
           PR  T  Y+GGI  +V Y++R K+P+ +  I + G R+N+ +++A++W+ D Y +N+L F
Sbjct: 181 PRIETYCYEGGIREYVQYMNRDKEPIHEEIIYVSGERNNVQVEVALQWSIDAYSDNLLGF 240

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI   DGGTHL GL++ LTR + +   K    K+   ++ G++ REG T V+S+K+PD
Sbjct: 241 ANNIRTVDGGTHLEGLKTVLTRTMNNIARKRNKLKEGASNLGGENVREGLTGVISVKVPD 300

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F  QTK KL ++EVR +V+S V + L+ +LE  P  A  I++K + A    +AARRAR
Sbjct: 301 PEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPNVADAILEKAIQAFNAAEAARRAR 360

Query: 397 DLTRRKGVLDIAS 409
           +L RRK VL+ ++
Sbjct: 361 ELVRRKSVLESST 373


>gi|3021642|dbj|BAA25341.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 381

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 219/384 (57%), Positives = 291/384 (75%), Gaps = 3/384 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKIL+VE+ARFDKM+SSQE+GTL
Sbjct: 298 QEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILHVEKARFDKMISSQEVGTL 357

Query: 478 ITALGTGIGQDSFDINKLRYHKII 501
           ITALG GIG+D ++I+KLRYH II
Sbjct: 358 ITALGCGIGRDEYNIDKLRYHNII 381


>gi|194477398|gb|ACF74795.1| DNA gyrase subunit B [Halorubrum sodomense]
          Length = 401

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 198/401 (49%), Positives = 270/401 (67%), Gaps = 6/401 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGSAGND--T 169
           SY+VSGGLHGVGVSVVNALS  L++ ++R+G ++   F  G             G D  T
Sbjct: 3   SYQVSGGLHGVGVSVVNALSERLEVEVRRDGGVFRHEFARGEPAEDGFERVRDMGPDEST 62

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F P  +IF   +F   TL +RLREL+FLNS V+I L+D    +  E T  Y GGI
Sbjct: 63  GTEIRFWPDEEIFETTEFQTSTLANRLRELAFLNSGVEIRLVD--DRDDTEETFKYDGGI 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV+YL+  + P+ +  I  +   D + +++AM+  +    +V  F NNI  ++GGTHL
Sbjct: 121 REFVAYLNETRSPIHEEVIYFEDETDGVHVEVAMQATEELQGSVHAFANNINTREGGTHL 180

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ALTR +  Y  +         ++ G+D REG T+V+S+K PDP+F  QTK KL +
Sbjct: 181 TGFKTALTRTVNDYANEHGLVDDLDANLKGEDVREGLTAVVSVKHPDPQFEGQTKTKLGN 240

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR VVES  ++ L  + EE+P  A+ +V K  +A+  R AA++A +LTRRK  L+  +
Sbjct: 241 SEVRGVVESATHEKLGTFFEENPDTAEKVVHKAAEAARARKAAKKAEELTRRKSALESTA 300

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC  RDP ++ELF+VEGDSAGGSAKQGR+RENQAILPL+GKILNVE+ R D++L
Sbjct: 301 LPGKLADCQTRDPTEAELFVVEGDSAGGSAKQGRNRENQAILPLKGKILNVEKHRLDRIL 360

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            + EI  LITA+G GIG++ FDI  +RY+KII+MTDADVDG
Sbjct: 361 ENDEIRALITAIGAGIGEE-FDIEDVRYNKIILMTDADVDG 400


>gi|24021179|gb|AAN40980.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|56675140|emb|CAI34872.1| DNA gyrase subunit B [Aeromonas sp. F544A]
 gi|83683058|emb|CAJ47373.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 372

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 217/374 (58%), Positives = 280/374 (74%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R          Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|223634721|sp|Q01879|TOP2_PICGU RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|190347620|gb|EDK39928.2| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1400

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 149/719 (20%), Positives = 255/719 (35%), Gaps = 70/719 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEVL 49
           +D  Q L  L+ + KRP  YIG  +                         GL+ +  E+L
Sbjct: 56  SDQYQKLSQLEHILKRPDTYIGSVEKTGVEMWSFDAATESMIYKEVHIVPGLYKIFDEIL 115

Query: 50  DNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I V ++  + + +V ++G+GIP ++HK+E I   E+I   L    
Sbjct: 116 VNAADNKIRDPSMRNIKVNIDAENNTISVMNDGKGIPIEIHKKEKIYIPELIFGNLLTSS 175

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL-DNPLVVTGS 164
            ++    KV+GG +G G  + N  S+   L         +Y+ ++ N +       +T  
Sbjct: 176 NYDDDEKKVTGGRNGYGAKLCNIFSTEFVLETADLNTSQVYKQTWTNNMANLTKPKITKL 235

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
                 T+VTF P    F ++  + D    L+ R+ +L        I L DK+       
Sbjct: 236 KSKKEYTKVTFKPDLSKFHMEMLDDDILSVLRRRVYDLCGTVKDCNIYLNDKKLSIRNFK 295

Query: 222 TM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
           +            S      +   ++   I     N   ++A   +DG    V  F N+I
Sbjct: 296 SYVEMYVNAIRERSPDPVAPEGETRNYSTIVHEVFNDRWEVAFAVSDGSFNQV-SFVNSI 354

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
               GGTH+  +   +  ++           K K ++   + R      ++  + +P F+
Sbjct: 355 ATTSGGTHVKYVSDQIITKLID-ALTKKEKGKKKLNIKPQEVRNNMFVFINCLIENPAFT 413

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDASMVRDAARRAR 396
           SQTKE+L +      V  F        +      AK     I  K+       +    ++
Sbjct: 414 SQTKEQLTTR-----VAQFGGKPSEKIVISDQFIAKILKTSIADKIRTIVNANEDKEMSK 468

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG-----GSAKQGRSRENQAIL 451
               RK  +              ++  K  L L EGDSA      G    GR        
Sbjct: 469 ADGSRKSRIKNQVKLVDANKAGTKEGYKCTLILTEGDSAMPLAVAGLTVVGRD--YYGCF 526

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADVD 509
           PLRGK+LNV  A  +++  + EI ++   +G    +     +I  LRY  I+IMTD D D
Sbjct: 527 PLRGKLLNVREASIEQVSKNAEINSIKQIMGLQHKKRYTPENIKSLRYGHIMIMTDQDQD 586

Query: 510 GAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGK----SLQYVKDEESLEDYL- 563
           G+HI+ L++ F     P L+   GFL     P+  +T        +    +    E +  
Sbjct: 587 GSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVKVTITGRGNHRVIPFYNMPEFEKWRE 646

Query: 564 ---INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +      +       +    +D  +K    ++D    +            
Sbjct: 647 TEGTTCKWKHKYFKGLGTSLESEGREYFAALDRHMKSFHALQDGDSQYIDM--------- 697

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
            F+ +   E             +   +  E      IN   IL            +L+G
Sbjct: 698 AFSKKKADER-KDWLQAFRPGTHLDPQIREIPISEFINKELILFSMADNVRSIPSILDG 755


>gi|308153142|dbj|BAJ22160.1| DNA gyrase subunit B [Saccharomonospora azurea]
          Length = 399

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 184/402 (45%), Positives = 261/402 (64%), Gaps = 15/402 (3%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SY VSGGLHGVGVSVVNALS+ L + + R+G I+   +   +    L+  G     TGT 
Sbjct: 1   SYAVSGGLHGVGVSVVNALSTALDVEVHRDGRIWVQHYEKSVP-GDLIDKGPTE-RTGTS 58

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---------- 222
           VTF    DIF   +++ +T+  RL+E++FLN  + I L D+R  +  +            
Sbjct: 59  VTFWADPDIFETTEYSAETVARRLQEMAFLNKGLTIVLRDERVADEADEDATGERAGIKE 118

Query: 223 --MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
              +Y GG++ FV+Y++  K P+  S I  +   + + +++AM+WN  +  +V  F N I
Sbjct: 119 RTYYYPGGLQDFVAYINASKDPIHPSVIGFEQKGEGLEVEVAMQWNSSFTPSVYTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALTR + +Y       K+   ++ GDD REG  +++SIK+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAIVSIKLAEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE RS V++  N+ L+ W E +P EAKII+ K + +S  R AAR+ARDL R
Sbjct: 239 GQTKTKLGNSEARSFVQTTCNEWLADWFERNPAEAKIIINKAVSSSQARLAARKARDLVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG +DI  LPGKL DC  RDP++ EL++VEGDSAGGSAK+GR    QAILP+RGKI+NV
Sbjct: 299 RKGAMDIGGLPGKLKDCRSRDPEECELYIVEGDSAGGSAKEGRDSRYQAILPIRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L +QE+ +LITALGTGI  D FDI+KLRYHK+++
Sbjct: 359 EKARIDRVLKNQEVQSLITALGTGI-HDDFDISKLRYHKVVL 399


>gi|37956525|gb|AAP15348.1| gyrase B [Geobacter grbiciae]
          Length = 382

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 212/384 (55%), Positives = 283/384 (73%), Gaps = 2/384 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L+L I+R+G +++ S+  G    PL + G      GT +TFLP   IF   +F++D L  
Sbjct: 1   LELEIRRDGKVFQQSYAYGAPLTPLEIVGETK-KRGTRITFLPDDTIFETTEFSFDILSQ 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLREL+FLN+ V+I++ D+R  E +     Y+GGI +FV YL+R++  L   P+  +G R
Sbjct: 60  RLRELAFLNAGVRITISDER-EEGKHHDFHYEGGIVSFVEYLNRNRTVLHPKPVYFRGER 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
             I +++A+++ND Y E V  F NNI   +GGTHL G R+ALTR + SY   +  +KK+K
Sbjct: 119 AGIDMEIAIQYNDSYDEKVFTFANNINTHEGGTHLVGFRAALTRSMNSYAGANELTKKEK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            S+ G+D REG T+V+S+K+P P+F  QTK KL +SEV+  VES +N+ L+ +LEE+P  
Sbjct: 179 VSISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGFVESLMNEQLAVFLEENPKI 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AK I+ K ++A+  R+AAR+AR+LTRRK  LDI+SLPGKLADC ERDP   EL+LVEGDS
Sbjct: 239 AKDIIGKSIEAARAREAARKARELTRRKSALDISSLPGKLADCQERDPALCELYLVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           AGGSAKQGR R+ +AILPL+GKILNVE+ARFDKMLSSQEIGTLITALGT IG++ FD+ K
Sbjct: 299 AGGSAKQGRDRKFRAILPLKGKILNVEKARFDKMLSSQEIGTLITALGTSIGKEDFDVAK 358

Query: 495 LRYHKIIIMTDADVDGAHIRTLLL 518
           LRYH+II+MTDADVDG+HI TLLL
Sbjct: 359 LRYHRIIVMTDADVDGSHILTLLL 382


>gi|56675142|emb|CAI34873.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 372

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 216/374 (57%), Positives = 280/374 (74%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R          Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  G+D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGEDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|164663033|ref|XP_001732638.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
 gi|159106541|gb|EDP45424.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
          Length = 1376

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 140/665 (21%), Positives = 249/665 (37%), Gaps = 87/665 (13%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGD----------------------TDGESGLHHMIYEVL 49
           +D+ Q L  L+ V +RP  YIG                       T    G + +  E+L
Sbjct: 24  SDTYQKLSQLEHVLRRPDTYIGSVERRTETMWVYDVAKEQMAYRDTSYVPGFYKIFDEIL 83

Query: 50  DNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +     D + VT++ D G+ +V +NG+GIP ++H++E +   E+I   L    
Sbjct: 84  VNAADNKVRDPSMDTMKVTIDKDAGTISVWNNGQGIPVEIHEKEQVYIPELIFGNLLTSS 143

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN---IYEMSFINGILDN-PLVVTG 163
            ++    KV+GG +G G  + N  S+   +    +      Y+  F N + D     +T 
Sbjct: 144 NYDDDEAKVTGGRNGFGAKLTNIYSTEFIVETA-DKQRELKYKQVFSNHMHDKDKPKITK 202

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
           +   +  T +TF P   +F +   + DT    ++ +                        
Sbjct: 203 NTRKEEYTCITFKPDLSLFHMDSIHPDTEALLMKRV-----------------------F 239

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
              G     V            + +           ++    +DG    V  F NNI   
Sbjct: 240 DMAG---TRVIRPHGGNPVPRPTIVYDASEDHGRLWEVGFAVSDGTARQV-SFVNNIATI 295

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG H+  + S +  +I  +++K       K +      R+     ++ ++ +P F SQT
Sbjct: 296 KGGKHVDHVESQIVERIMEHLKKGKKDAPIKANH----IRQQLWIFVNCQIVNPTFDSQT 351

Query: 344 KEKLV---SSEVRSVVESFVNDGLSAWLEEH-PLEAKIIVKKVLDASMVRDAARRARDLT 399
           KE L    S+     V    +D     L+       + IV+   D      A    +   
Sbjct: 352 KETLTLKPSAFGSKWV--MPDDFAKKVLKSGVIDNVQSIVQYHQD--RQLQATDGRKRSR 407

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGK 456
                L+ A+  G       +   +  L L EGDSA G A  G S   R+   + PLRGK
Sbjct: 408 VSVTKLEDANWAG------TKRSAECTLILTEGDSAKGLAVSGLSEVGRDAYGVFPLRGK 461

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           +LNV  A +D++  + EI  +   LG   G+    ++ LRY  ++IMTD D DG+HI+ L
Sbjct: 462 LLNVREATYDQIKKNTEIKNIKEILGLQHGKSYSTVDGLRYGSLMIMTDQDFDGSHIKGL 521

Query: 517 LLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           ++ +     PSL+      +    P+   T+G+ ++        E +             
Sbjct: 522 IINYLDHFYPSLLKIPNFLVEFITPIIKATKGQEVRSFFTIPEFEQWKATGD-------- 573

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
              +G  +K           ++ +  +D   +       +     + +   +++      
Sbjct: 574 -GGRGWTTKYYKGLGTSKPYEMKEYFRDMDRHMLSFDTIRPEDHDLLDLAFNKKKADDRK 632

Query: 636 SKLAN 640
             L  
Sbjct: 633 EWLRQ 637


>gi|56675146|emb|CAI34875.1| DNA gyrase subunit B [Aeromonas sp. F729F]
 gi|56675148|emb|CAI34876.1| DNA gyrase subunit B [Aeromonas eucrenophila]
 gi|83683052|emb|CAJ47370.1| DNA gyrase subunit B [Aeromonas eucrenophila]
 gi|83683054|emb|CAJ47371.1| DNA gyrase subunit B [Aeromonas eucrenophila]
          Length = 372

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 221/374 (59%), Positives = 286/374 (76%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFSDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q        +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHQKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLAEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|22450172|dbj|BAC10603.1| DNA gyrase B subunit [Shewanella marinintestina]
          Length = 380

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 225/383 (58%), Positives = 295/383 (77%), Gaps = 4/383 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALSS L++ I+R+G +YE  + +G+ D P+   G A   TGTE+ F P
Sbjct: 1   GGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPITAIGEAT-KTGTEIRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ FS   F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+
Sbjct: 60  SAETFSDVLFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R AL
Sbjct: 118 VNKTPVNKEVFHFIQERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E+   +KK K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 178 TRNLNNYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLAD
Sbjct: 238 EQTMGEQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 CQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTGIGQDSFDINKLRYHK 499
           LITALG GIG+D +D +K RYH 
Sbjct: 358 LITALGCGIGRDEYDPDKTRYHN 380


>gi|317420183|emb|CBW30251.1| gyrase B subunit [Pseudoalteromonas arctica]
          Length = 381

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 225/383 (58%), Positives = 295/383 (77%), Gaps = 6/383 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  LKL ++REG ++E  +  G+ D PL V G + + TGTE+ F PS + 
Sbjct: 1   GVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGES-DTTGTELRFWPSGET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  DF+Y+ L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV YL+R+K 
Sbjct: 60  FTNLDFHYEILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIQAFVEYLNRNKT 118

Query: 242 PLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           P+ +        R+   IS++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 119 PIHKGVFHFTHEREEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSALTRT 178

Query: 300 ITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 179 LNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 238

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             + +  + +L E+P +AKI+V K++DAS  R+AAR+AR++TRRKG +D+A LPGKLADC
Sbjct: 239 QAMAEKFTEFLLENPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLPGKLADC 298

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 299 QEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 358

Query: 478 ITALGTGIGQDSFDINKLRYHKI 500
           ITALG GIG+D ++  KLRYH+I
Sbjct: 359 ITALGCGIGRDEYNPEKLRYHRI 381


>gi|186462258|gb|ACC78606.1| DNA gyrase subunit B [Serratia sp. 242-1T]
          Length = 375

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 222/378 (58%), Positives = 289/378 (76%), Gaps = 4/378 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG ++E ++  G    PL V G   + TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFW 59

Query: 177 PSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F +  +F YD L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV Y
Sbjct: 60  PSYETFTNNVEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A
Sbjct: 118 LNKNKTPIHPNVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 MTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 238 VETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDIN 493
           TLITALG GI +D ++ +
Sbjct: 358 TLITALGCGIVRDEYNPD 375


>gi|66474547|gb|AAY46843.1| GyrB [Aeromonas bestiarum]
 gi|66474549|gb|AAY46844.1| GyrB [Aeromonas bestiarum]
          Length = 372

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 283/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG D ++ +K
Sbjct: 359 LGCGIGSDEYNPDK 372


>gi|255076711|ref|XP_002502027.1| predicted protein [Micromonas sp. RCC299]
 gi|226517292|gb|ACO63285.1| predicted protein [Micromonas sp. RCC299]
          Length = 1459

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 149/696 (21%), Positives = 258/696 (37%), Gaps = 72/696 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGD--------------TDG--------ESGLHHMIYEVL 49
            D  Q    L+ +  RP  Y+G               T+           GL+ +  E+L
Sbjct: 55  EDIYQKKTQLEHILLRPDTYVGSCEKTEEKAWVYCKDTNKLVQRQMSFVPGLYKIFDEIL 114

Query: 50  DNAIDESLEGYADIIT----VTLNMD-----GSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
            NA D       + +     VTL +D     G   V ++G GIP ++HKEEG+   E+I 
Sbjct: 115 VNATD-------NKVRDPSMVTLRVDIDQEAGCIRVYNDGNGIPVEMHKEEGVYVPELIF 167

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-LD 156
             L     +N    KV+GG +G G  + N  S+   +    +G     Y   F N +   
Sbjct: 168 GHLLTSSNYNDNEKKVTGGRNGYGAKLANIFSTEFVVETC-DGSRERRYRQVFKNNMGEK 226

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
              VVT     D  T +TF P    F++ +   DT+    + +     +     I K + 
Sbjct: 227 CEPVVTKCKPTDNWTCITFKPDLAKFNMTELEDDTVALMCKRVYDAAGN-----IGKNTK 281

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
                      G   +V      ++   +        + N   ++ +  +D  +   + F
Sbjct: 282 VFLNGERLKVKGFSDYVDLYLEGRENAPKVY-----EKVNDRWEVCVTISDSGNFQQVSF 336

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I    GGTH++ +   +  +    +EK    +K  +++     +      ++  + +
Sbjct: 337 VNGICTMKGGTHVNQVADEVAGK---LLEKIKKKEKSCKNLKAAHVKNHLWVFVNALIEN 393

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F SQTKE L +        +F +   ++      +    IV+++L  +  + +    +
Sbjct: 394 PAFDSQTKETLNTRA-----SNFGSKYEASDKVIKQMMNSGIVEQILSWASFKQSKEMKK 448

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAIL 451
              ++   L          D   R+ +   L L EGDSA      G +  GR R    + 
Sbjct: 449 SDGKKATRLTGIPKLDDANDAGGRNSEHCTLILTEGDSAKALAVSGLSVVGRDR--YGVF 506

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNV  A  D+++++ EI  +   LG   G        LRY  I+IMTD D DG+
Sbjct: 507 PLRGKLLNVRDASHDQIMNNAEINHIKQILGLRHGTTYESAKSLRYGHIMIMTDQDHDGS 566

Query: 512 HIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           HI+ LL+ F     PSL+   GFL     P+   T+GK  +        +++   +   E
Sbjct: 567 HIKGLLINFLHAHFPSLLKIPGFLVEFITPIIKATKGKQSKVFYTLPEYDNW--KEHAEE 624

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
                  +          +   +A +    +         T      +  +   +   E 
Sbjct: 625 TGTGRGWNIKYYKGLG-TSTAKEAKEYFAALDHHKKTFAWTTDGDGNLIDMAFSKKRVED 683

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
             +  +             +  +   IN   IL  R
Sbjct: 684 RKAWLNAYEPGTYLDMTGDDVRYDDFINKELILFSR 719


>gi|3021634|dbj|BAA25337.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 381

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 221/384 (57%), Positives = 289/384 (75%), Gaps = 3/384 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMKVVGDSE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SSETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EEFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D + +++A++WND + EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNEVFHFSVQREDGVGVEIALQWNDSFTENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   SKK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV   VE
Sbjct: 178 RNLYTYIEQEGLSKKNKVATTGDDIREGLTAIISVKVPDPKFSSQTKDKLVSSEVNLAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +    S +L E P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC
Sbjct: 238 QEMGKYFSDFLLEKPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 QEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTL 357

Query: 478 ITALGTGIGQDSFDINKLRYHKII 501
           ITALG GIG++ ++I KLRYH II
Sbjct: 358 ITALGCGIGREEYNIEKLRYHHII 381


>gi|19912051|dbj|BAB88337.1| DNA gyrase subunit B [Cytophaga sp. MBIC04693]
          Length = 391

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 184/392 (46%), Positives = 257/392 (65%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ LK  + R+G I+E  +  G    P+   G   +  GT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVHRDGKIWEQEYERGKALYPVKSVGET-DYRGTIVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIE 230
            P   IF+    ++Y+TL +R+RELSFLN  V I++ D+R      E    T F   G++
Sbjct: 60  KPDDTIFTQTIEYSYETLSNRMRELSFLNKGVTITITDRRRKDDKGEFISETFFSNDGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD +++PL+Q+ I ++G +++I +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGNREPLIQNVISMEGEKNDIPVEVAMIYNTSYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTTTLKKYADSSGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEEHP +AK+IV+KV+ A+  R AA +AR++ +RK V+ +  L
Sbjct: 240 EVSSAVSQAVSEMLTDYLEEHPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMSVGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPAQCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|51571553|emb|CAH18943.1| gyrase B [Corallococcus coralloides]
          Length = 384

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 204/387 (52%), Positives = 274/387 (70%), Gaps = 3/387 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGV+ VN LS W K+R++R G  YE S+  G+ +      G   +  GT + F
Sbjct: 1   VSGGLHGVGVTCVNFLSEWFKVRVQRAGKAYEQSYSRGVSNGSPQEVG-TTDKRGTTIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV Y
Sbjct: 60  KPDSTVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISSFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++A
Sbjct: 118 LNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +
Sbjct: 178 LTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGL 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLA
Sbjct: 238 VEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLDGGGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI 
Sbjct: 298 DCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIV 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKIII 502
           TLITALGTGIG + +D  K RYH+II+
Sbjct: 358 TLITALGTGIGAEDYDPEKARYHRIIL 384


>gi|314940667|gb|ADT64459.1| DNA gyrase subunit B [Ochrobactrum ciceri]
          Length = 376

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 249/377 (66%), Positives = 309/377 (81%), Gaps = 1/377 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG +T
Sbjct: 1   DQNSYKVSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGGET 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV+FLPS + FS+ +F++DTL+ RLREL+FLNS V+I L D+R  +  E  + Y GG+
Sbjct: 61  GTEVSFLPSPETFSMVEFDFDTLERRLRELAFLNSGVRIKLADRRHADLVEHELHYDGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV Y+D+ KKPL++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL
Sbjct: 121 VEFVKYIDQSKKPLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHL 180

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTRQ+T Y + S  +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVS
Sbjct: 181 AGFRGALTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVS 240

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR VVES VN+ LS WLEEHP   K +V+KV+ A+  R+AAR+ARD+T RK  L + S
Sbjct: 241 SEVRPVVESLVNEALSTWLEEHPAGGKAVVEKVIQAAAAREAARKARDIT-RKSNLSVTS 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+
Sbjct: 300 LPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMI 359

Query: 470 SSQEIGTLITALGTGIG 486
           SS ++GTLITALGT IG
Sbjct: 360 SSDQVGTLITALGTSIG 376


>gi|314940665|gb|ADT64458.1| DNA gyrase subunit B [Ochrobactrum sp. MJ11]
          Length = 376

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 250/377 (66%), Positives = 309/377 (81%), Gaps = 1/377 (0%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLV TG AGN+T
Sbjct: 1   DQNSYKVSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVATGEAGNET 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV+FLPS + FS+ +F++DTL+ RLREL+FLNS V+I L D R  + +E  + Y GG+
Sbjct: 61  GTEVSFLPSPETFSMVEFDFDTLERRLRELAFLNSGVRIKLADHRHADVKEHELHYDGGL 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV Y+D+ KK L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL
Sbjct: 121 VEFVKYIDQSKKSLLEEPIYIRNEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHL 180

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTRQ+T Y + S  +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVS
Sbjct: 181 AGFRGALTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVS 240

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR VVES VN+ LS WLEEHP   K +V+KV+ A+  R+AAR+ARD+T RK  L + S
Sbjct: 241 SEVRPVVESLVNEALSTWLEEHPAGGKAVVEKVIQAAAAREAARKARDIT-RKSTLTVTS 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC ERDP KSELF+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+ML
Sbjct: 300 LPGKLADCQERDPAKSELFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRML 359

Query: 470 SSQEIGTLITALGTGIG 486
           SS+++GTLITALGT IG
Sbjct: 360 SSEQVGTLITALGTSIG 376


>gi|3021646|dbj|BAA25343.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 381

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 220/384 (57%), Positives = 290/384 (75%), Gaps = 3/384 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 QEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTL 357

Query: 478 ITALGTGIGQDSFDINKLRYHKII 501
           ITALG GIG++  +I+KLRYH II
Sbjct: 358 ITALGCGIGREENNIDKLRYHNII 381


>gi|19912099|dbj|BAB88361.1| DNA gyrase subunit B [CFB-group bacterium QA93A]
          Length = 391

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 181/392 (46%), Positives = 250/392 (63%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  L   + +EG I++  +  G    P+   G   + TGT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGDT-DFTGTIVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIE 230
           LP   IF     +NYDTL  R+REL++LN  + I+L DKR+ +            + G+ 
Sbjct: 60  LPDKSIFQQTTEYNYDTLATRMRELAYLNKGITITLTDKRNQDDEGNDISEVFHSEEGLS 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD  +  ++Q  I ++G ++ I +++AM +ND Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGTRTQIIQDVISMEGEKNGIPVEVAMVYNDSYAENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y ++S   K  K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTHTLKKYADESGLLKNVKFEIAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+ I  L
Sbjct: 240 EVSAAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSIGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE DP + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDIN----KLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNMFTALGVSIGTEDDPRELNLSKLRYH 391


>gi|148971435|gb|ABR20255.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 191/426 (44%), Positives = 264/426 (61%), Gaps = 7/426 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++ +YKVSGGLHGVGVS VNALS  L + + + G+ Y +SF  G + 
Sbjct: 1   EVIMTVLHAGGKFDKDTYKVSGGLHGVGVSCVNALSKALDVNVCKGGHEYTISFARGKVV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G +    GT V+F+P   IFSV  ++Y+T+ +RLREL+FLN  ++I   D+R+ 
Sbjct: 61  APLKKLGESK-KRGTTVSFIPDEQIFSVTTYDYETIYNRLRELAFLNKGLEIIFKDERNT 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHEN 272
           +  E     +GG+ +FV +L+  K PL Q PI I+G+++        ++AM+      + 
Sbjct: 120 DHAEAVFNAEGGVVSFVQFLNETKTPLFQDPIYIKGTKELHDGTLEFEVAMQCTKLILKQ 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD-DCREGFTSVLS 331
               +  + Q   G      +  L        +    S+     + G    RE   S L 
Sbjct: 180 SFLMSTTLLQDREGPTKLDFQLLLQGYSIPISKIILFSRTQSLRLRGMMFVREWQQSSLQ 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             +  P    +  +  V  +V S  +  V +  + +LEE P  AKIIV K   A+  R+A
Sbjct: 240 RSLI-PSLRDKLSKSSVMGDVGSAAQQIVGEEFATYLEERPSIAKIIVDKAALAAQAREA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR+L++RK VLD A LPGKL DCSERDP K E+++VEGDSAGGSAK GR R  QAIL
Sbjct: 299 ARKARELSKRKSVLDSARLPGKLTDCSERDPAKCEIYIVEGDSAGGSAKGGRDRRFQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           P+RGKILNVE++R  K+L + E+G++I+A G GIG+D F++ KLRYHKII+MTDADVDG+
Sbjct: 359 PIRGKILNVEKSRLQKVLQNTEVGSMISAFGCGIGKDGFNLEKLRYHKIILMTDADVDGS 418

Query: 512 HIRTLL 517
           HIRTLL
Sbjct: 419 HIRTLL 424


>gi|113681126|ref|NP_001038656.1| DNA topoisomerase 2-beta [Danio rerio]
 gi|94733296|emb|CAK11279.1| novel protein similar to vertebrate topoisomerase (DNA) II beta
           180kDa (TOP2B) [Danio rerio]
          Length = 1618

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 142/746 (19%), Positives = 273/746 (36%), Gaps = 79/746 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 54  YQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEEIGMNLREISFVPGLYKIFDEILVNAA 113

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I +T++ +  + +V +NG+GIP   HK+E +    +I   L     ++ 
Sbjct: 114 DNKQRDKNMTTIKITIDPESNTISVWNNGKGIPVVEHKDEKMYVPALIFGHLLTSSNYDD 173

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY----EMSFINGILDNPLVVTGSAGN 167
              KV+GG +G G  + N  S    +        Y    + ++   +  +          
Sbjct: 174 NEKKVTGGRNGYGAKLCNIFSLKFTVETA--CKEYKRSFKQTWTENMGKSNEAKIKYFDG 231

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +  T VTF P    F+++  + D +     R  +++     V++ L  K+          
Sbjct: 232 EDFTCVTFQPDLAKFNMEKLDKDIVALLTRRAYDVAGSCRGVKVILNGKK---------L 282

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
                 ++V +  + K       +++     N   ++ +  ++   + +  F N+I    
Sbjct: 283 PVNSFRSYVDFYVKDKLDETGVALKVVNETVNERWEVCLTMSEKGFQQI-SFVNSIATTK 341

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTK
Sbjct: 342 GGRHIDYIVDQIVGKLIEVVKKKNKAG---VSVKPFQVKNHLWVFVNALIENPTFDSQTK 398

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E + + + +S                +    + I+  V   +         +  + +   
Sbjct: 399 ENM-TLQTKSFGSKCALSEKFIRAATNCGIVESILNWVKFKAQ---TQLNKKCSSVKHSK 454

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILN 459
           +          D   +   +  L L EGDSA      G    GR R    + PLRGKILN
Sbjct: 455 IKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILN 512

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTL 516
           V  A   +++ + EI  +I  LG    +   D      LRY +I+IMTD D DG+HI+ L
Sbjct: 513 VREATHKQIMENAEINNIIKILGLQYKKSYDDPESLKSLRYGRIMIMTDQDQDGSHIKGL 572

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIELF 575
           L+ FF    PSL+ + FL     P+   ++ K           E++  + +S       +
Sbjct: 573 LINFFHHNWPSLLKHTFLEEFITPIVKASKNKQEVSFYSIPEFEEWKKHTESYKTWHIKY 632

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
               G  +  + + +  D  +   + K           + A I+  F+ +   +    L 
Sbjct: 633 YKGLGTSTSKEAKEYFSDMERHRIMFKYNGTE------DDAAITLAFSKKKTDDRKEWLT 686

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695
                  NF+ ++ ++  HG       L     R +     +    I    S  +R   +
Sbjct: 687 -------NFMEDRRQRRMHGLPEQY--LYGTSTRHLSYNDFINKELILFSNSDNERSIPS 737

Query: 696 RIEENYLT----ILSLICNGDKIKIT 717
            ++         + + +   DK ++ 
Sbjct: 738 LVDGLKPGQRKVLFTCVKRNDKREVK 763


>gi|3021636|dbj|BAA25338.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 381

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 220/384 (57%), Positives = 292/384 (76%), Gaps = 3/384 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 QEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTL 357

Query: 478 ITALGTGIGQDSFDINKLRYHKII 501
           ITALG GIG++ ++I+KLRYH II
Sbjct: 358 ITALGCGIGREEYNIDKLRYHNII 381


>gi|168011945|ref|XP_001758663.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690273|gb|EDQ76641.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1238

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 135/693 (19%), Positives = 263/693 (37%), Gaps = 69/693 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            ++ Q    L+ +  RP  Y+G  +  +                    GL+ +  E+L N
Sbjct: 29  EETYQKKTQLEHILLRPDTYVGSIEKYTQTLWVYEDGKMVNRSITFVPGLYKIFDEILVN 88

Query: 52  AIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + V +++D    +V +NG G+P ++HKEEG+   E+I   L  
Sbjct: 89  AADNKQRDPSM----DTVKVEIDIDQNFISVYNNGAGVPVEIHKEEGVYVPEMIFGHLLT 144

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGIL-DNPLVV 161
              +N    K +GG +G G  + N  S+   +    +G     Y+  F N +   +   +
Sbjct: 145 SSNYNDSEKKTTGGRNGYGAKLANIFSTEFTIETA-DGTRQRRYKQIFTNNMSLKSEPKI 203

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           T     +  T+V+F P    F++     D +    + +  +   +      + + +    
Sbjct: 204 TTCKPYENWTKVSFKPDLSKFNMTHLESDVVALMSKRVVDIAGCIGKGCKVELNGKR--- 260

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                   + +V           + P+     + +   ++ +  +DG    V  F N+I 
Sbjct: 261 --LPIKSFQDYVGLYLSVANFNREEPLPRIYEKVSDRWEICVSLSDGQFNQV-SFCNSIA 317

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   +   +   V K   +   K        +      ++  + +P F S
Sbjct: 318 TIRGGTHVAYVADQIVSHVLGLVNKKNKTAGVK----PFQIKNHMWVFVNALINNPTFDS 373

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE L +            +  + +L++       +V+ VL  +  + +    ++   +
Sbjct: 374 QTKETLTTRASSF---GSKCELSAEFLKKVAKCG--VVENVLTWADFKQSKELKKNDGAK 428

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
           +  +          D   R  ++  L L EGDSA   A  G S   R+   + PLRGK+L
Sbjct: 429 RQRITGIPKLDDANDAGGRSSEQCTLILTEGDSAKALAMSGISVVGRDKYGVFPLRGKLL 488

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A   +++ + EI  +   LG   G+D  +   LRY  ++IMTD D DG+HI+ LL+
Sbjct: 489 NVREASHKQIMENAEITNIKRILGLQHGKDYDNTKSLRYGHLMIMTDQDHDGSHIKGLLI 548

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            F     PSL+      +    P+   +  + +         E +  + +         +
Sbjct: 549 NFIHSFWPSLLKIPSFLVEFITPIVKASNKQKMLSFYTMPEYEAWKESLN--------GE 600

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +KG   K         + +  +  ++   +      E  +          ++   +  + 
Sbjct: 601 TKGWTIKYYKGLGTSTSKEGKEYFRELSKHKKDFKWESEMDGDAIEMAFSKKKIEARKTW 660

Query: 638 LANR-----LNFIAEKSEKSWHGSINNSDILVK 665
           L +      L+  A+K    +   +N   IL  
Sbjct: 661 LRHYEPGTFLDMTADKI--KYSDFVNKELILFS 691


>gi|38453813|dbj|BAD02207.1| DNA topoisomerase II [Arthroderma simii]
 gi|38453815|dbj|BAD02208.1| DNA topoisomerase II [Arthroderma simii]
          Length = 1089

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 141/679 (20%), Positives = 247/679 (36%), Gaps = 41/679 (6%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +     ++   +++++ N +             D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y     
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMYT 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +                I     +   ++    +DG  + V  F N+I    GGTH++
Sbjct: 241 KAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTHVN 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L + 
Sbjct: 300 YISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNCQIVNPAFTSQTKEQLTTR 356

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
             +   +  V+D     + +  +   I+      A  +       R        L  A+ 
Sbjct: 357 ASQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANK 416

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDK 467
            G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  D+
Sbjct: 417 AG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQ 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     P+
Sbjct: 471 ISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPT 530

Query: 528 LIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           L+   GFL     P+  + +G        +         +            K       
Sbjct: 531 LLKIPGFLIEFITPIVKVWKGNPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKKYYKGLG 590

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
             +  D  +    L +     H     E  +I   F+ +   E       +         
Sbjct: 591 TSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYLDH 649

Query: 647 EKSEKSWHGSINNSDILVK 665
              + ++   IN   IL  
Sbjct: 650 STDQITYTDFINKELILFS 668


>gi|29839795|ref|NP_828901.1| DNA topoisomerase IV subunit B [Chlamydophila caviae GPIC]
 gi|29834142|gb|AAP04779.1| topoisomerase, subunit B, putative [Chlamydophila caviae GPIC]
          Length = 602

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 161/604 (26%), Positives = 268/604 (44%), Gaps = 49/604 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           ++Y   S+  L  L+ ++ R  MYIG     S    G++ +  EV+DNAIDE + G+   
Sbjct: 2   ATYTEASVVSLASLEHIRLRAGMYIGRLGDGSQVEDGIYTLFKEVVDNAIDEFIMGHGKR 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I+++     S TV D GRGIP      E +S       +++ G K+ Q  +  S GL+GV
Sbjct: 62  ISISTQAT-SVTVRDYGRGIPLGKM-IECVS-------KINTGAKYTQDVFHFSVGLNGV 112

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+  VNALS    +R  R+   +  +F  GIL N     GS  +  GTE+TF P   IF+
Sbjct: 113 GLKAVNALSETFTVRSVRKKKYHAATFCKGILQN--SRQGSTKDPDGTEITFSPDPTIFT 170

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN + L+ ++R  ++L+  ++I   D+            + G++         +   
Sbjct: 171 DFSFNDEFLRKKIRRYTYLHPGLEILCNDEV--------FVSQQGLQDLFKEEITEETLY 222

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                       N  +       + ++E    F N     DGGTHL+  + A+ + I  Y
Sbjct: 223 PPIAF------QNSELSFLFTHLETHNERYFSFVNGQETVDGGTHLAAFKEAIVKGINEY 276

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K         +   +D R+G    ++IK+  P F SQTK KL ++++RS +   V   
Sbjct: 277 FGK---------TFTSNDIRDGLVGCIAIKIASPIFESQTKNKLGNTQIRSGIIKDVKSA 327

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARR-----ARDLTRRKGVLDIASLPGKLADCS 418
           +   L+++   A +++ K+      R   +           +    +          +  
Sbjct: 328 IIQELKKNKSYADLLLDKIKLNEKTRKNIQFIKQDLKDKQKKLHYKIPKLRDCKFHYNER 387

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
               + S +F+ EG+SA  S    R+   QA+  LRGK +NV     +KM  + E+  L 
Sbjct: 388 SLYGEASSIFVTEGESASASILSSRNPLTQAVFSLRGKPMNVFSLEEEKMYKNDELFYLA 447

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           +ALG            LRY+KII+ TDADVDG HIR LL+TFF +    ++ N  L+I++
Sbjct: 448 SALGITKNNTQH----LRYNKIILATDADVDGMHIRNLLITFFLKTFLPIVENHHLFILE 503

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDDALK 596
            PL+ +    +  Y   ++     +      E           G IS  + + FI   ++
Sbjct: 504 TPLFKVRYKDTTLYCYSDQEKVQAIQKLGKKEANLEITRFKGLGEISPKEFKTFIGADMR 563

Query: 597 IDKL 600
           +  +
Sbjct: 564 LTPV 567


>gi|163256317|dbj|BAF95669.1| DNA gyrase subunit B [Bradyrhizobium sp. KO5]
          Length = 272

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 156/268 (58%), Positives = 194/268 (72%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           YEV+DNAIDE+L G+A  + VTLN D S TV D+GRGIP  +HKEEG+SAAEVIMT+LHA
Sbjct: 1   YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGVSAAEVIMTQLHA 60

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A
Sbjct: 61  GGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDA 120

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y
Sbjct: 121 PGKRGTEVTFLASTETFKNVEYDFATLEHRLRELAFLNSGVHIVLSDMRHAVEKREEMHY 180

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DG
Sbjct: 181 SGGVEEFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDG 240

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKD 313
           GTHL+G R ALTRQ+  Y E +   +K 
Sbjct: 241 GTHLAGFRGALTRQVNGYAEANAKKEKI 268


>gi|62184674|ref|YP_219459.1| DNA topoisomerase IV subunit B [Chlamydophila abortus S26/3]
 gi|62147741|emb|CAH63485.1| putative DNA gyrase subunit b or topoisomerase IV subunit b
           [Chlamydophila abortus S26/3]
          Length = 602

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 161/604 (26%), Positives = 266/604 (44%), Gaps = 49/604 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           ++Y   S+  L  L+ ++ R  MYIG     S    G++ +  EV+DNAIDE + GY   
Sbjct: 2   ATYTEASVVSLASLEHIRLRAGMYIGRLGDGSQVEDGIYTLFKEVVDNAIDEFIMGYGKT 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + V  + D + TV D+GRGIP      E +S       +++ G K+ Q  +  S GL+GV
Sbjct: 62  L-VIFSDDSTITVRDSGRGIPLGKM-IECVS-------KINTGAKYTQDVFHFSVGLNGV 112

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+  VNALS    +R  R+   +   F  GIL +     GS  +  GTE+TF P   IF+
Sbjct: 113 GLKAVNALSEKFTVRSVRKKKYHYAIFHKGILQD--SRQGSTKDPDGTEITFSPDPTIFT 170

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              FN + L+ ++   ++L+  ++I   ++            + G+          +   
Sbjct: 171 NFSFNDEFLRKKIHRYTYLHPGLEIIYNNEA--------FVSQQGLLDLFKEEIPEETLY 222

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                       N  +       D + E    F N     DGG+HL+  + A+ + I  Y
Sbjct: 223 PPLAFH------NAELSFLFSHLDTHTERYFSFVNGQETIDGGSHLAAFKEAIVKGINEY 276

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
             K+            +D REG    ++IK+  P F SQTK KL ++++RS +   V   
Sbjct: 277 FGKN---------FTSNDIREGIVGCIAIKIASPIFESQTKNKLGNTQIRSGIIKEVKSA 327

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARR-----ARDLTRRKGVLDIASLPGKLADCS 418
           +   L+++   A +++ K+      R   +           +    +          +  
Sbjct: 328 IIQELKKNKSYADLLLDKIKLNEKTRKNIQFIKQDLKDKQKKLHYKIPQLRDCKFHYNER 387

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
               + S +F+ EG+SA  S    R+   QA+  LRGK +NV     +K+  + E+  L 
Sbjct: 388 SLYGEASSIFVTEGESASASILSSRNPLTQAVFSLRGKPMNVFSLEEEKVYKNDELFYLA 447

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
           TALG            LRY+KII+ TDADVDG HIR LL+TFF +   S++ N  L+I++
Sbjct: 448 TALGITKNSTQH----LRYNKIILATDADVDGMHIRNLLITFFLKTFVSVVENHHLFILE 503

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDDALK 596
            PL+ +    +  Y   ++     +      E           G IS  + + FI   ++
Sbjct: 504 TPLFKVRYKDTTLYCYSDQEKTQAIQKLGKKEAHLEVTRFKGLGEISPKEFKTFIGADMR 563

Query: 597 IDKL 600
           +  +
Sbjct: 564 LTPV 567


>gi|62867458|emb|CAI79640.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 372

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 217/374 (58%), Positives = 280/374 (74%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R          Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGLFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|124377266|emb|CAM32366.1| DNA gyrase subunit B [Aeromonas sharmana]
          Length = 375

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 222/378 (58%), Positives = 289/378 (76%), Gaps = 4/378 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R+G++YE ++  G  + PL   G + + TGTE+ F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRQGHVYEQTYFLGEPEAPLKQIGDS-DQTGTEIRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI AFV +L+++K
Sbjct: 60  IFSDTLFHYEILVKRLRELSFLNSGVAIHLEDER--DNREQHFHYEGGIRAFVEFLNQNK 117

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+          RD+ I++++AM+WND Y ENV CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 118 TPIHPKAFYFAQERDDGITVEVAMQWNDSYQENVYCFTNNIPQRDGGTHLAGFRAALTRT 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 LNNYMDKEGYSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQC 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 238 MGEKLDEYLLENPADAKTVVTKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 298 RDPALSELYIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLSSQEVATLIT 357

Query: 480 ALGTGIGQDSFDINKLRY 497
           ALG GIG+D +D +K+RY
Sbjct: 358 ALGCGIGRDEYDPDKMRY 375


>gi|255729204|ref|XP_002549527.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
 gi|240132596|gb|EER32153.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
          Length = 1398

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 154/763 (20%), Positives = 269/763 (35%), Gaps = 54/763 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +++ Q L  L+ + KRP  YIG  +                         GL+ +  E+L
Sbjct: 138 SETYQKLSQLEHILKRPDTYIGSVEKTKMEMWCFDAETESMVFKEVTIVPGLYKIFDEIL 197

Query: 50  DNAIDESLEGYA-DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I V ++ +  +  V ++G+GIP ++H +E +   E+I   L    
Sbjct: 198 VNAADNKIRDPTMKNIKVKIDPENNTIEVMNDGKGIPVEMHTKENMYIPELIFGNLLTSS 257

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL-DNPLVVTGS 164
            ++    KV+GG +G G  + N  S+  ++       G +Y+  + + +       +T  
Sbjct: 258 NYDDNQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQVWTDNMTNVAKPKITTL 317

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
                 T++TF P    F +   + D    L+ R+ +L     +  I L DKR       
Sbjct: 318 RTKKEYTKITFKPDLAKFDMDSLDEDLLAVLRRRVYDLCGTVKNCNIYLNDKRLSISSFK 377

Query: 222 TM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
           +            S     +    ++   I     N   ++A   +DG    V  F N+I
Sbjct: 378 SYVEMYVKAIRERSPEPLTEDGTSKNFTTIVHEVFNERWEVAFAVSDGTFNQV-SFVNSI 436

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
               GGTH+  +   +  ++   + K     K K  +   + R+     ++  + +P F+
Sbjct: 437 ATTAGGTHVKYVSDQIINKLVETLSK-KEKGKKKLMIKPQEVRDNMFLFINCLIENPAFT 495

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTKE+L +   +          ++     + +    IV K+   +   +     +    
Sbjct: 496 SQTKEQLTTKVSQF---GGKQKFVANDNLINRILKTSIVDKIRAIANANEDKALQKADGS 552

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKI 457
           RK  +              +      L L EG SA   A  G S   R+     PLRGK+
Sbjct: 553 RKSRIKGQVSLVDANKAGTKLGHNCTLILTEGLSALNLAVAGLSVVGRDYYGCFPLRGKL 612

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADVDGAHIRT 515
           LNV  A  D++  + EI  L   +G    +     +I +LRY  I+IMTD D DG+HI+ 
Sbjct: 613 LNVREASADQISKNAEINALKQIIGLQHKKHYTAENIKQLRYGHIMIMTDQDQDGSHIKG 672

Query: 516 LLLTFFFRQMPSLIH-NGFLYIIKPPLYGITR------GKSLQYVKDEESLEDYLINQSL 568
           L++ F     P L+   GFL     P+  +T          +         E +   +  
Sbjct: 673 LIINFLETSFPGLLEIPGFLLEFITPIVKVTIKTRGSGNNRVIPFYTMPEFEAWRDGEGS 732

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
                         S         +A +    +            E A    +   +   
Sbjct: 733 QCRWTHKYYKGLGTSTPM------EAREYFTALDRHLKKFHALQGEDASYIDLAFSKKKA 786

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688
           +             +   E +E      IN   IL            VL+G         
Sbjct: 787 DERKDWLQGFIPGTHLDPEINEIPISDFINKELILFSMSDNIRSIPSVLDGLKPGQRKVL 846

Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
           Y  I      E  +  L+   + +     G  SL+ TI  + +
Sbjct: 847 YGCIKKKLKSEIKVAQLAGYVSENTGYHHGEQSLVQTIIGLAQ 889


>gi|302812673|ref|XP_002988023.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
 gi|300144129|gb|EFJ10815.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
          Length = 1151

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 140/728 (19%), Positives = 271/728 (37%), Gaps = 78/728 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDNAID 54
            Q    L+ V  RP  Y+G  +  +                    GL+ +  E+L NA D
Sbjct: 18  YQKKTPLEHVLLRPDTYVGSIEKHTQTLWVYEGGQLVNRAVTYVPGLYKIFDEILVNAAD 77

Query: 55  E-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
                 S+    D + VT++++  + +V +NG G+P ++H E+G+   E+I   L     
Sbjct: 78  NKQRDPSM----DAVKVTISVEQNTISVYNNGDGVPVEVHNEQGVYVPEMIFGHLLTSSN 133

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVTGSA 165
           ++    K +GG +G G  + N  S+   +     + G  Y+  F N +   +   ++   
Sbjct: 134 YDDNEKKTTGGRNGYGAKLANIFSTEFVIETADGKRGKKYKQVFSNNMSAKSEPAISSCK 193

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            N+  T+VTF P    F +     D +    + +  +   +  ++  + + +   +    
Sbjct: 194 SNENWTKVTFKPDLAKFHMTYLEEDVVALMSKRVLDIAGCLGRTVKVELNGQKLPV---- 249

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                 +V       +   +  +     R N   ++ +  +DG  + V  F N+I    G
Sbjct: 250 -KTFSDYVGLYLASAQKGKEETLPRIYERANDRWEVCVSLSDGQFQQV-SFVNSIATIRG 307

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH+  +      QI S++++    K    +V G   R      ++  + +P F SQTKE
Sbjct: 308 GTHVQHVS----EQIVSHIQEIVNKKNKNANVKGFQIRNHLWVFVNSLIDNPAFDSQTKE 363

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
            L + +          +    +L++       +V  VL  +  + +    ++   ++  L
Sbjct: 364 TLTTRQTSF---GSKCELSPEFLKKVSKCG--VVDNVLSWADFKQSKELKKNDGAKRQRL 418

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVER 462
              +      D   ++ +   L L EGDSA   A  G S   R +  + PLRGK+LNV  
Sbjct: 419 TGIAKLDDANDAGGKNSEACTLILTEGDSAKALAMSGISVVGRNHYGVFPLRGKLLNVRE 478

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A   +++ + EI ++   LG   G+   +   LRY  ++IMTD D DG+HI+ L++ F  
Sbjct: 479 ATHKQIMDNAEITSIKQILGLQQGKGYENTKSLRYGHLMIMTDQDHDGSHIKGLIINFIH 538

Query: 523 RQMPSLIH-NGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
              PSL+   GFL     P+     +   +         E +                K 
Sbjct: 539 TFWPSLLKVPGFLVEFITPIVKATHKNGKVLSFYTMPEYESW----------------KE 582

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            +        I     +          + +  ++        N E    I ++ + K   
Sbjct: 583 SLRGETKGWSIKYYKGLGTSTAKEGKEYFRDLVKHKKDFAWDNDEDGDSIELAFSKK--- 639

Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700
                  ++ K W          + +  R +     +    I    +   R   + ++  
Sbjct: 640 -----KTEARKIW-LRGYQPGTFLDQTQRVITYSDFINKELILFSLADLARSVPSMVDGL 693

Query: 701 YLTILSLI 708
                 ++
Sbjct: 694 KPGQRKIL 701


>gi|56675136|emb|CAI34870.1| DNA gyrase subunit B [Aeromonas popoffii]
 gi|56675138|emb|CAI34871.1| DNA gyrase subunit B [Aeromonas sp. F600C]
          Length = 372

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSIEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|133778472|dbj|BAF49242.1| DNA gyrase B subunit [Leptospira fainei serovar Hurstbridge]
          Length = 387

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 197/388 (50%), Positives = 277/388 (71%), Gaps = 3/388 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS WL++ + + G I+   +  GI   P+ V G +    GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEWLEVEVYQRGKIHYQKYAKGIPQGPVTVIGDSE-ARGTVV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P + IF+  +F YD L  R REL+FLN  +++ + D R  E  E    + GGI +FV
Sbjct: 60  RFKPDATIFTTTEFQYDVLTARFRELAFLNKGLKLIVKDTRKAEVEEHDFLFDGGIVSFV 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+ +K PL    I  + ++D++  ++A++++D Y EN+ CFTNNI    GGTHL G R
Sbjct: 120 EYLNENKHPLH-KTIHFERNKDDVVAEIAIQYSDTYSENIFCFTNNINNSLGGTHLEGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +ALTR +  +++K     K + +   GDD +EG T+V+S+K+P P+F+SQTKEKLV++E+
Sbjct: 179 AALTRTLNDFLKKDQQLVKKQPTGLSGDDLKEGLTAVISVKIPQPQFNSQTKEKLVNAEI 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + ++++   +GLS + EE+P   K I++K + A+  R+AAR+ARDLTRRK VL+   LPG
Sbjct: 239 KGIMQTLTGEGLSLFFEENPSVTKKILEKCILAAKAREAARKARDLTRRKTVLEGGGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCSE+DP  SEL++VEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L ++
Sbjct: 299 KLADCSEKDPAGSELYIVEGDSAGGSAKQGRDRNYQAILPLKGKILNVEKSRLDKILGNE 358

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           EI TL++ALGTGIG+D F+++K+RYHKI
Sbjct: 359 EIRTLVSALGTGIGEDEFNVDKIRYHKI 386


>gi|23451159|gb|AAN32685.1| DNA gyrase subunit B [Aeromonas bestiarum]
          Length = 372

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTXVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|66474551|gb|AAY46845.1| GyrB [Aeromonas salmonicida subsp. salmonicida]
          Length = 372

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 283/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV + VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVNTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|19912041|dbj|BAB88332.1| DNA gyrase subunit B [Cytophaga sp. MBIC04663]
          Length = 391

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 186/392 (47%), Positives = 256/392 (65%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ LK  + R+G ++E  +  G    P+   G   ++TGT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVHRDGKVWEQEYERGKSLYPVKSVGET-DETGTIVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIE 230
           +P   IF+    ++Y+TL +R+RELSFLN  V IS+ DKR      E    T +   G+ 
Sbjct: 60  IPDDSIFTQTTEYSYETLANRMRELSFLNKGVTISITDKRVKDKEGEYLSETFYSDAGLS 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD  ++PL+Q  I ++G ++ I +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGTREPLIQGVIAMEGEKNGIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S   +K K  V GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADSSGMLEKLKFEVQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V + L+ +LEEHP +AK+IV+KV+ A+  R AA +AR++ +RK V+ I  L
Sbjct: 240 EVSSAVSQAVCEMLTDYLEEHPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMSIGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP + E+FLVEGDSAGG+AK GR R+ QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPAQCEVFLVEGDSAGGTAKMGRDRKFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|209863321|gb|ACI88760.1| DNA gyrase subunit B [Aeromonas sp. JH108]
          Length = 375

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 223/374 (59%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS
Sbjct: 3   GLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPS 61

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL++
Sbjct: 62  PTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQ 119

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR
Sbjct: 120 NKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTR 179

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 180 TLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 239

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC 
Sbjct: 240 AMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQ 299

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLI
Sbjct: 300 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLI 359

Query: 479 TALGTGIGQDSFDI 492
           TALG GIG+D ++ 
Sbjct: 360 TALGCGIGRDEYNP 373


>gi|302782265|ref|XP_002972906.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
 gi|300159507|gb|EFJ26127.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
          Length = 1151

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 139/724 (19%), Positives = 269/724 (37%), Gaps = 70/724 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDNAID 54
            Q    L+ V  RP  Y+G  +  +                    GL+ +  E+L NA D
Sbjct: 18  YQKKTPLEHVLLRPDTYVGSIEKHTQTLWVYEGGQLVNRAVTYVPGLYKIFDEILVNAAD 77

Query: 55  ESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                   D + VT++++  + +V +NG G+P ++H E+G+   E+I   L     ++  
Sbjct: 78  NKQRDPIMDAVKVTISVEQNTISVYNNGDGVPVEVHNEQGVYVPEMIFGHLLTSSNYDDN 137

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVTGSAGNDT 169
             K +GG +G G  + N  S+   +     + G  Y+  F N +   +   ++    N+ 
Sbjct: 138 EKKTTGGRNGYGAKLANIFSTEFVIETADGKRGKKYKQVFSNNMSAKSEPAISSCKSNEN 197

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
            T+VTF P    F +     D +    + +  +   +  ++  + + +   +        
Sbjct: 198 WTKVTFKPDLAKFHMTYLEEDVVALMSKRVLDIAGCLGRTVKVELNGQKLPV-----KTF 252

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             +V       +   +  +     R N   ++ +  +DG  + V  F N+I    GGTH+
Sbjct: 253 SDYVGLYLASAQKGKEETLPRIYERANDRWEVCVSLSDGQFQQV-SFVNSIATIRGGTHV 311

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
             +      QI S++++    K    +V G   R      ++  + +P F SQTKE L +
Sbjct: 312 QHVS----EQIVSHIQEIVNKKNKNANVKGFQIRNHLWVFVNSLIDNPAFDSQTKETLTT 367

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            +          +    +L++       +V  VL  +  + +    ++   ++  L   +
Sbjct: 368 RQTSF---GSKCELSPEFLKKVSKCG--VVDNVLSWADFKQSKELKKNDGAKRQRLTGIA 422

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFD 466
                 D   ++ +   L L EGDSA   A  G S   R +  + PLRGK+LNV  A   
Sbjct: 423 KLDDANDAGGKNSEACTLILTEGDSAKALAMSGISVVGRNHYGVFPLRGKLLNVREATHK 482

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           +++ + EI ++   LG   G+   +   LRY  ++IMTD D DG+HI+ L++ F     P
Sbjct: 483 QIMDNAEITSIKQILGLQQGKGYENTKSLRYGHLMIMTDQDHDGSHIKGLIINFIHTFWP 542

Query: 527 SLIH-NGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           SL+   GFL     P+     +   +         E +                K  +  
Sbjct: 543 SLLKVPGFLVEFITPIVKATHKNGKVLSFYTMPEYESW----------------KESLRG 586

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                 I     +          + +  ++        N E    I ++ + K       
Sbjct: 587 ETKGWSIKYYKGLGTSTAKEGKEYFRDLVKHKKDFAWDNDEDGDSIELAFSKK------- 639

Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704
              ++ K W          + +  R +     +    I    +   R   + ++      
Sbjct: 640 -KTEARKIW-LRGYQPGTFLDQTQRVITYSDFINKELILFSLADLARSVPSMVDGLKPGQ 697

Query: 705 LSLI 708
             ++
Sbjct: 698 RKIL 701


>gi|209863323|gb|ACI88761.1| DNA gyrase subunit B [Aeromonas sp. JH119]
          Length = 371

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 223/372 (59%), Positives = 283/372 (76%), Gaps = 3/372 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS
Sbjct: 3   GLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPS 61

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL++
Sbjct: 62  PTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQ 119

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR
Sbjct: 120 NKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTR 179

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 180 TLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 239

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC 
Sbjct: 240 AMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQ 299

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLI
Sbjct: 300 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLI 359

Query: 479 TALGTGIGQDSF 490
           TALG GIG+D +
Sbjct: 360 TALGCGIGRDEY 371


>gi|196000919|ref|XP_002110327.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
 gi|190586278|gb|EDV26331.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
          Length = 1164

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 147/690 (21%), Positives = 251/690 (36%), Gaps = 51/690 (7%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDNAID 54
            Q    L+ +  RP  YIG  +  +                    GL+ +  E+L NA D
Sbjct: 18  YQKKSQLEHILLRPDTYIGSVEHITQTMWVIEDGKMMNKSITYPPGLYKIFDEILVNAAD 77

Query: 55  ESLEG-YADIITVTLNMDGSC-TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                   D I +T++ + +   + +NGRGIP ++H+EE +    +I   L     +N  
Sbjct: 78  NKQRDPRMDTIKITIDPENNLLKIWNNGRGIPVEIHREENVYVPTLIFGHLLTSSNYNDD 137

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTG--SAGND 168
             KV+GG +G G  + N  S+  K+       G  +  ++ N +                
Sbjct: 138 ERKVTGGRNGYGAKLCNIFSTEFKVETYSADSGKQFSQTWNNNMSKAREPKITAIEKSKQ 197

Query: 169 TGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             T +TF P    F +     D    +  R  +++     V++ L   R P         
Sbjct: 198 EFTCITFKPDLQKFGLTHLTSDIVSLMTRRAYDIAAAARGVKVYLNGDRIPIKTFKDYVE 257

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                 F++  ++      +   +I     N   ++ +  +D        F N+I    G
Sbjct: 258 L-----FLANEEKDDGEEDKEKRKITHEIVNGRWEVCLTASDR-GFQQASFVNSIATTKG 311

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++ +   L  ++   V+K     K    V     +      ++  + +P F SQTKE
Sbjct: 312 GTHVNHVVDQLVEKLMGAVKKKN---KGGIDVKPYQIKNHMWVFINCLIENPSFDSQTKE 368

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
            +     +S   S                 + I+  V   +  + +    +    +   L
Sbjct: 369 NMTLR-AKSFGSSCNLSEKFIKGALGCGVVERILNWVRFKTQAQLS---KKCSASKHSKL 424

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVER 462
                     D   R+     L L EGDSA   A  G S   R+   + PLRGK+LN   
Sbjct: 425 KGIPKLDDANDAGTRNSSDCTLILTEGDSAKALAVSGLSVVGRDKYGVFPLRGKLLNTRE 484

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDI---NKLRYHKIIIMTDADVDGAHIRTLLLT 519
           A   +++ + EI  +I  LG    +   D      LRY  ++IM D D DG+HI+ LL+ 
Sbjct: 485 ASSKQVMENAEINNIIKILGLHYNKKYNDDVSLKSLRYGNLMIMADQDQDGSHIKGLLIN 544

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDS 578
           F     PSL+   FL     P+  +T+GK+          E++  N  S       +   
Sbjct: 545 FIHHNWPSLLQQPFLKEFITPIVKVTKGKNEIAFYSIPEFEEWKQNTASYKSWKVKYYKG 604

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            G  +  + + +  D  +     +  Y  +D     Q   S     E  + +N S+  K 
Sbjct: 605 LGTSTPKEAKEYFADMSRHRVAFR--YDGNDDDTAIQLAFSKKMISERKEWLNKSMEDKK 662

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIA 668
             +LN   E        S  +    V +  
Sbjct: 663 NRKLNNKPEPYLYGKEVSDISYSDFVNKEL 692


>gi|110612701|gb|ABG78313.1| GyrB [uncultured bacterium]
          Length = 429

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 182/430 (42%), Positives = 268/430 (62%), Gaps = 19/430 (4%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  +YKVSGGLHGVG SVVNALS    + + ++G ++   +  GI    +   G+
Sbjct: 2   AGGKFDNDAYKVSGGLHGVGASVVNALSEEATVVVHQDGGMHLQEYKIGIPKARVKKIGT 61

Query: 165 AGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT- 222
                GT   F P + IF    ++N+D +   LR+ ++L    +++L D R  +    T 
Sbjct: 62  TK-SHGTITLFKPDATIFKEGIEWNWDKIVSHLRQQAYLVKGTRVALFDAREHQEAFETE 120

Query: 223 ---------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
                           +++GG+ + V++ ++ + P+ +    +   ++ + +++A ++ D
Sbjct: 121 TPMLRDLGIDAPSMTFYFEGGLRSLVAFYNKRQTPIHKRIFYVDKEQEGVQVEVAFQYVD 180

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
                +  F NN    +GGTH++G ++ALTR + +Y   +   K+   +  GDD  EG T
Sbjct: 181 DITPRITAFANNTYNSEGGTHVTGFKTALTRSLNTYGRAANIIKEKDENFTGDDVLEGIT 240

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+P+ +F  QTK KL S+E  S V S   + L  +LEE+P +A+ I+ KVL A  
Sbjct: 241 AVVSVKLPEIQFEGQTKAKLGSTEATSAVASVFGEALGMFLEENPDDARAIINKVLLALK 300

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA+ A+D   RKG L+  +LPGKLADC  ++ +++ELF+VEGDSAGGS+KQGR R  
Sbjct: 301 ARKAAKAAKDSVLRKGALEGMTLPGKLADCQVKNAEEAELFIVEGDSAGGSSKQGRDRRT 360

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPLRGKILNVERAR D+ML+S EI  L+ ALGT IG D FDI+KLRYHK+I+ TDAD
Sbjct: 361 QAILPLRGKILNVERARIDRMLASVEIRALVVALGTAIG-DVFDISKLRYHKLILATDAD 419

Query: 508 VDGAHIRTLL 517
           VDG+HIRTLL
Sbjct: 420 VDGSHIRTLL 429


>gi|3021628|dbj|BAA25334.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 381

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 220/384 (57%), Positives = 291/384 (75%), Gaps = 3/384 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +    S +L E P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC
Sbjct: 238 QEMGKYFSDFLLEKPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 QEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTL 357

Query: 478 ITALGTGIGQDSFDINKLRYHKII 501
           ITALG GIG++ ++I+KLRYH II
Sbjct: 358 ITALGCGIGREEYNIDKLRYHHII 381


>gi|18369810|dbj|BAB84100.1| DNA topoisomerase II [Aspergillus flavus]
          Length = 1219

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 148/690 (21%), Positives = 260/690 (37%), Gaps = 55/690 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           ++    L  L+ + KRP  YIG  +  S                      GL+ +  E++
Sbjct: 23  SEKYHKLTQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDEIV 82

Query: 50  DNAIDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
            NA D     +     D I VT++ + G  +V +NGRGIP ++H +E I   E+I   L 
Sbjct: 83  VNAADNKQNDANM---DEIRVTISRETGEISVWNNGRGIPIEMHAKEKIYVPELIFGHLL 139

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVT 162
               ++    KV+GG +G G  + N  S+   +  +  R+   Y+ ++ + +        
Sbjct: 140 TSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQDSRQKKKYKQTWTSNMTKMGKAKI 199

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             A  D  T+VTF P    F +   + D      R +  L  + ++++    S  P    
Sbjct: 200 TDAKGDDYTKVTFKPDYAKFGMDGMDNDFEALVKRRVYDLAGTAKVAVKLNGSRVPVRNF 259

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y       +        P  +    I     +   ++    +DG  + V  F N+I  
Sbjct: 260 KKYMEMYTKAIRRERGDDGPAAKDE--IITCSPDPRWEVGFAVSDGSFQQV-SFVNSIAT 316

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++ +   +  ++   V+K   +     ++     R      ++ ++ +P F+SQ
Sbjct: 317 TSGGTHVNYIADQICSKLADQVKKKNKNG---ATLKPAQIRNHIFIFVNAQIVNPAFTSQ 373

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE+L +   +   +  + +     + +  + + I+      A  +       R      
Sbjct: 374 TKEQLTTKSSQFGSKCVLEEDFYKKILKTDVMSNILHFAQQKADQMLKKTDGGRRARMNN 433

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             L  A+  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LN
Sbjct: 434 PKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLN 487

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A F+++  + EI  +   LG    ++  D   LRY  ++IMTD D DG+HI+ LL+ 
Sbjct: 488 VRDATFEQISKNAEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLIN 547

Query: 520 FFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           F   Q PSL+      I    P+  + +G      K+      +          E     
Sbjct: 548 FLQAQFPSLLRIPEFLIEFITPIIKVWKGD----PKNPTKQRSFFTMPEYEAWKEEHKHE 603

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN---VSLA 635
           +G   K                 +D   +  +    Q    G+      ++         
Sbjct: 604 RGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDNEVGLIELAFSKKKADERKEWL 663

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVK 665
            +           S+ S+   IN   IL  
Sbjct: 664 RQFKPGTFLDHSVSKISYTDFINKELILFS 693


>gi|18369814|dbj|BAB84102.1| DNA topoisomerase II [Aspergillus niger]
          Length = 1391

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 145/698 (20%), Positives = 254/698 (36%), Gaps = 61/698 (8%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHM 44
            S+  ++  Q L  L+ + KRP  YIG  +  +                      GL+ +
Sbjct: 55  KSNNASEKYQKLTQLEHIIKRPDTYIGSVERTTQQMWVYSSESEGMEYREVSYVPGLYKI 114

Query: 45  IYEVLDNAID-----ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEV 98
             E++ NA D     E++      I VT++ + G  +V +NGRGIP ++H +E I   E+
Sbjct: 115 FDEIVVNAADNKQNDENM----SEIRVTVDRESGVISVWNNGRGIPIEMHAKEKIYVPEL 170

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILD 156
           I   L     ++    KV+GG +G G  + N  S+   +  +   +   Y  ++   +  
Sbjct: 171 IFGHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQDSSQKKKYRQTWTENMTK 230

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
                   A  +   +VTF P    F +   + D      R +  L  + ++++    + 
Sbjct: 231 IGKAKITEAKGEDYAKVTFKPDYAKFGMDGMDDDFEALVKRRVYDLAGTAKVNVKLNGTR 290

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
            P      Y       +        P  +    I     +   ++    +DG  + V  F
Sbjct: 291 IPIRGFKKYMEMYTKAIRKERGDTGPAPKDE--IITCSPDPRWEVGFAVSDGAFQQV-SF 347

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N+I    GGTH++ +   +        E+     K+  ++     R      ++  + +
Sbjct: 348 VNSIATTSGGTHVNYIADRI---CNRLAEQVKKKNKNGATLKTAQIRNHIFIFVNALIVN 404

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F+SQTKE+L +   +   +  +++     + +  +   I+      A  +       R
Sbjct: 405 PAFTSQTKEQLTTKASQFGSKCVLDEDFYKKVLKTAVMDNILHFAQQKADQMLKKTDGGR 464

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPL 453
                   L  A+  G       +D     L L EGDSA G A  GR+    +   + PL
Sbjct: 465 RSRMNNPKLTDANKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPL 518

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNV  A FD++  +QEI  +   LG    ++  D   LRY  ++IMTD D DG+HI
Sbjct: 519 RGKLLNVRDASFDQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHI 578

Query: 514 RTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGI-----TRGKSLQYVKDEESLEDYLINQS 567
           + LL+ F   Q PSL+      I    P+  +           +        E +     
Sbjct: 579 KGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAEEHQ 638

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
                                   D  +    L +     H     E  +I   F+ +  
Sbjct: 639 -----HERGWDHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDNEAELIELAFSKKKA 693

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
            E       +            + ++   IN   IL  
Sbjct: 694 DER-KEWLRQFKPGTFLDHSVEKITYTDFINKELILFS 730


>gi|38453821|dbj|BAD02211.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 141/679 (20%), Positives = 247/679 (36%), Gaps = 41/679 (6%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +     ++   +++++ N +             D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y     
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRTPIKSFKKYMEMYT 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +                I     +   ++    +DG  + V  F N+I    GGTH++
Sbjct: 241 KAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTHVN 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L + 
Sbjct: 300 YISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTR 356

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
             +   +  V+D     + +  +   I+      A  +       R        L  A+ 
Sbjct: 357 PSQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANK 416

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDK 467
            G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  D+
Sbjct: 417 AG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQ 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     P+
Sbjct: 471 ISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPT 530

Query: 528 LIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           L+   GFL     P+  + +G        +         +            K       
Sbjct: 531 LLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKKYYKGLG 590

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
             +  D  +    L +     H     E  +I   F+ +   E       +         
Sbjct: 591 TSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYLDH 649

Query: 647 EKSEKSWHGSINNSDILVK 665
              + ++   IN   IL  
Sbjct: 650 STDQITYTDFINKELILFS 668


>gi|302673662|ref|XP_003026517.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
 gi|300100200|gb|EFI91614.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
          Length = 1494

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 138/597 (23%), Positives = 252/597 (42%), Gaps = 49/597 (8%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----------------------S 39
           S   +++   +++ Q L  L+ + KRP  YIG  +                         
Sbjct: 81  SKKNKSA---SETYQKLTQLEHILKRPDSYIGSVETIQQPMWTYDAEKKRMVHRTVKYVP 137

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           G   ++ E+L NA D  +     D I V+ ++D  + +V +NG+GIP ++H  E +   E
Sbjct: 138 GFFKIVDEILVNAADNKINDPSMDTIKVSYDLDENTISVYNNGKGIPIEMHSREKMYIPE 197

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL 155
           +I   L +   ++    K++GG +G G  + N  S    +    K     Y+ ++ + + 
Sbjct: 198 LIFGHLLSSSNYDDDEKKLTGGRNGYGAKLANIYSHEFTVETADKNTKQKYKQTWTDNMS 257

Query: 156 D-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLI 211
                 +T +   +  T VTF P    F +   + DT   LQ R+ +L+     V++ L 
Sbjct: 258 KCGKPKITSNGKGEEYTRVTFRPDLKRFGMDRIDEDTASLLQRRVYDLAGTVKDVKVFLN 317

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           D+R                A     +         P  I         ++A   ++G  +
Sbjct: 318 DERLKIKNFKQYVEMYINSAQAEASEVSGGAAQTKPT-IVHEILGKRWEVAFTVSEGTFQ 376

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N+I    GGTH++ +   + + + + + K   +   K        +      ++
Sbjct: 377 QV-SFANSIATIKGGTHVNLIADQIAKNLLASINKKNKAATVKAPQ----IKNHMWIFVN 431

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             + +P F SQTKE L     +   +  +++     +++ P     +V+ +L+ +  +  
Sbjct: 432 ALIENPTFDSQTKETLTLPASKFGTKPVLSEDFMKKVQKSP-----LVENILNWAKFKAD 486

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQ 448
            +  +    ++  L          +   +  K   L L EGDSA   A  G     R+N 
Sbjct: 487 QQIKKTDGSKRSRLTGLPKLSDANNAGTKYAKDCTLILTEGDSAKALAIAGLGVVGRDNY 546

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            + PLRGK+LNV  AR D+++ ++EI  +   LG    +D  DI  LRY K++IMTD D 
Sbjct: 547 GVFPLRGKLLNVREARHDQIMKNEEIQNIKKILGLQHNKDYTDIASLRYGKLMIMTDQDH 606

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLEDYL 563
           DG+HI+ L+L F     PSL+     ++++   P+  +T+G   +        E +L
Sbjct: 607 DGSHIKGLILNFLDHFYPSLLKLDPAFLLEFITPIVRVTKGNQRKDFFTLPEYERWL 663


>gi|212659883|gb|ACJ37006.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 267

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 143/269 (53%), Positives = 192/269 (71%), Gaps = 2/269 (0%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           +EV+DN++DE+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHA
Sbjct: 1   FEVVDNSVDEALAGHADSILVKIHIDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHA 60

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL      
Sbjct: 61  GGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL-EV 119

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R     Y
Sbjct: 120 SAKRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHY 178

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI +FV +L + K PL  + I + G  + I +D A++W D Y E + CFTNNIPQKDG
Sbjct: 179 EGGIRSFVEHLAQLKTPLHPNVISVTGEHNGIVVDAALQWTDAYQETMYCFTNNIPQKDG 238

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           GTHL+G R+ALTR + +Y+E++  +++ K
Sbjct: 239 GTHLAGFRAALTRTLGNYIEQNGVARQAK 267


>gi|32306474|gb|AAP78925.1| DNA gyrase subunit B [Buchnera aphidicola]
          Length = 375

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 205/378 (54%), Positives = 279/378 (73%), Gaps = 4/378 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYK+SGGLHGVG+SVVNALS  L+L I +    Y+  + NG    PL + G
Sbjct: 1   HAGGKFDNSSYKISGGLHGVGISVVNALSEKLELIIYKNKKKYQQIYRNGKPQYPLSIIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            + N TGT + F PS   F     F Y+ L  RLRELSFLNS++ I L D R+       
Sbjct: 61  KS-NITGTYIRFWPSYKTFKNKTIFQYEILSKRLRELSFLNSNIAIYLYDNRTNIKNHYH 119

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
              KGGI+AFV +L++ K  +       +  ++   +++AM+W D + EN+LCFTNNIPQ
Sbjct: 120 Y--KGGIKAFVKFLNQKKIAIHSHIFYFKSKKEETELEIAMQWTDSHQENILCFTNNIPQ 177

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           KDGGTHLSG RS +TR +  ++EK   +KK+K S+ G+D REG T+V+SIK+PDP+FSSQ
Sbjct: 178 KDGGTHLSGFRSGMTRTLNLHIEKEGYNKKNKVSITGEDIREGLTAVISIKIPDPKFSSQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEVRS++ES +N+ L  +L E+P +AK I++K+++++ +R+AARRAR++ +RK
Sbjct: 238 TKDKLVSSEVRSIIESLINENLIEFLLENPNDAKFIIQKIINSTKIREAARRAREINKRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G+ D+ +LPGKL+DC E DPK SE++LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+
Sbjct: 298 GISDLGTLPGKLSDCQENDPKLSEIYLVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITA 480
           ++FDKML SQE+ +LITA
Sbjct: 358 SKFDKMLLSQEVSSLITA 375


>gi|328791048|ref|XP_001119985.2| PREDICTED: DNA topoisomerase 2 [Apis mellifera]
          Length = 1447

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 146/765 (19%), Positives = 265/765 (34%), Gaps = 80/765 (10%)

Query: 1   MSDNIQNSSYDADS--------IQILKGLDAVKKRPSMYIGDTDGES------------- 39
           MS  I+N S D  +         Q    L+ +  RP  YIG  +  +             
Sbjct: 1   MSTAIENGSNDNSAKKKTIEGIYQKKSQLEHILLRPDTYIGSVEPVTEIMWVYDKEKESM 60

Query: 40  ---------GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLH 88
                    GL+ +  E+L NA D        D I + +N  +   +V +NG+GIP  +H
Sbjct: 61  TQKEIKYVPGLYKIFDEILVNAADNKQRDPKMDTIKIEINAENNIISVWNNGKGIPVVIH 120

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY-- 146
           KEE +    +I   L     ++ +  KV+GG +G G  + N  S    +        Y  
Sbjct: 121 KEENMYVPTMIFGHLLTSSNYDDEEEKVTGGRNGYGAKLCNIFSHRFTVETA--SKEYKK 178

Query: 147 --EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
             + ++ N +             +  T+V F P    F +Q  + D +    R       
Sbjct: 179 CLKQTWSNNMGSASEPRIKDFSGEDFTKVIFSPDLSKFKMQSLDDDIIALMSRRAYD--- 235

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
              I+   +        T       + +V +  + ++  + +P++I         ++A+ 
Sbjct: 236 ---IAASTRGVKVFLNGTKIPVKNFKDYVDFYIKGREDDVGNPLKIVYENCGPRWEVAIA 292

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
            +D      + F N+I    GG H+  +   + +Q+T  ++K   +     ++     + 
Sbjct: 293 LSDK-GFQQMSFVNSIATTKGGRHVDHVTELIVKQLTETLKKKNKAG---VTIKPFQIKN 348

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
                ++  + +P F SQTKE +         +  +++           +  I+   +  
Sbjct: 349 HLWIFINCLINNPTFDSQTKENMTLQPKSFGSKCTLSEK----FITSVTKIGIVEAVLTW 404

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSA 439
           A    D+  +      ++  L          D       +  L L EGDSA      G A
Sbjct: 405 AKFKADSQLQKLGPKSKQRKLQGIPKLEDANDAGTNKSLECTLILTEGDSAKTMAVSGLA 464

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LR 496
             GR +    I PLRGKILNV  A   ++L + EI  LI  LG    +          LR
Sbjct: 465 AIGRDK--YGIFPLRGKILNVREATHKQILENAEINNLIKILGLQYKKKYETREDLKTLR 522

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556
           Y K++IMTD D DG+HI+ LL+ F     PSL+   F+     P+   T+G  +      
Sbjct: 523 YGKMMIMTDQDQDGSHIKGLLINFIHHNWPSLLKLNFVEEFITPIVKATKGNQVLSFFSM 582

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
                +          ++        S          A +  +  ++   +  +   +  
Sbjct: 583 PEFNKWKSETENFHTYKIKYYKGLGTS---------TAKEAKEYFENMTRHRIRFRYDGD 633

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
                      ++        L N ++    + E            L ++  R V     
Sbjct: 634 QDDQNIIMAFSKKCVDQRKDWLMNHMDETKRRKEIGLG-----ERYLYEKDTRTVSFSDF 688

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSL----ICNGDKIKIT 717
           +    +        R   N I+        +    +   DK ++ 
Sbjct: 689 INVELVLYSNYDNVRSIPNMIDGFKPGQRKVLYTCLKRNDKREVK 733


>gi|86169581|gb|ABC87030.1| DNA gyrase subunit B [Weissella halotolerans]
          Length = 394

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 193/395 (48%), Positives = 272/395 (68%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-- 168
              YKVSGGLHGVG SVVNALS++L + + R+G  Y M F  G +   + VT + G D  
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTFLDVTVVRDGQAYSMKFARGHVVQEMQVTTAEGQDIS 60

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GT V FLP  DIF     F+  TL +R+REL+FLN  ++IS+ D+R  EP   +  Y+G
Sbjct: 61  RGTIVHFLPDPDIFRETTEFDIKTLTNRVRELAFLNKGLRISITDRRPAEPVVNSFHYEG 120

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+ +V YLD HK  L + P+ ++G+ + I +++++++ D YH N++ FTNNI   +GGT
Sbjct: 121 GIKEYVEYLDVHKDVLFKDPVYVEGAENGIEVEVSLQYTDDYHINMMSFTNNIHTYEGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G  +ALTR I  Y  K    K++  ++ G+D REG T+++S+K PDP+F  QTK KL
Sbjct: 181 HETGFEAALTRVINDYARKHGQLKENDEALTGEDVREGLTAIVSVKHPDPQFEGQTKTKL 240

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +S+ R+ VE   ++  + ++ E+P  AK IV+K + AS  R AA+RAR+ TR+K  L+I
Sbjct: 241 GNSDARTAVERTFSETFARFMMENPDVAKQIVEKGMLASQARRAAKRAREATRKKSGLEI 300

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLAD + +DPK SELF+VEGDSAGGSAKQGR R  QAILP+RGKILNVE+A  D+
Sbjct: 301 SNLPGKLADNTSKDPKISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASLDR 360

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +L++ EI ++ TA+GTG G+D FD+ K  YHK II
Sbjct: 361 ILANDEIRSIFTAMGTGFGED-FDVEKANYHKFII 394


>gi|269799070|gb|ACZ43813.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 336

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 190/338 (56%), Positives = 250/338 (73%), Gaps = 4/338 (1%)

Query: 76  VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWL 135
           VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L
Sbjct: 1   VSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKL 60

Query: 136 KLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHR 195
           +L I R G I+  ++ +G+ D P+  TG   + TGTE+ F PS + F+   F+YD L  R
Sbjct: 61  ELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTNTLFHYDILAKR 119

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+ +K P+ +        R+
Sbjct: 120 LRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTPINKDAFHFSVERE 178

Query: 256 N-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           + I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK    KK K
Sbjct: 179 DGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGFLKKAK 238

Query: 315 RSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
            S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L+ +L E+P 
Sbjct: 239 SSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLAEYLLENPK 298

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           EA  +V K++DAS  R+AAR+ARD+TRRKG LD+A LP
Sbjct: 299 EASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLP 336


>gi|194475600|gb|ACF74547.1| DNA gyrase subunit B [Duganella violaceinigra]
          Length = 403

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 215/406 (52%), Positives = 289/406 (71%), Gaps = 20/406 (4%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLV 160
           +YKVSGGLHGVGVS VNALS  L++ I+R+G +++M F+ G            +  +P+ 
Sbjct: 1   AYKVSGGLHGVGVSCVNALSKLLRVTIRRDGKVHQMEFVRGAAQNREIEMLDGVAVSPIK 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G   +  GT+V F    +IF+  +F+Y+ L  R+RELSFLN+ V I L D+R+ +   
Sbjct: 61  VIGET-DKRGTDVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVNIKLTDQRNGKE-- 117

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLC 275
               ++GG   FV Y+++ K  L  +  +  G R       IS+D++M+WND ++E VLC
Sbjct: 118 EIFAFEGGTRGFVEYINKAKTVLHPTVFQATGERQSDQNTTISVDVSMQWNDAFNEQVLC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+GLR+A+TR I  Y++++  +KK K  + GDD REG T VLS+K+P
Sbjct: 178 FTNNIPQRDGGTHLTGLRAAMTRVINKYIDENDFAKKAKVEISGDDMREGLTCVLSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+A
Sbjct: 238 EPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLMEKPNDAKIICGKIVEAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RDLTRRKG++D   L  KLADC E+DP  SEL++VEGDSAGGSAKQGR R+ QAILPLRG
Sbjct: 298 RDLTRRKGIMDGLGLSAKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLRG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           K+LNVE+ARF+KMLSS++I TLI  LGT IG D F+I KLRYH+II
Sbjct: 358 KVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNIEKLRYHRII 403


>gi|163256326|dbj|BAF95673.1| DNA gyrase subunit B [Bradyrhizobium sp. KO19A]
          Length = 265

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 154/262 (58%), Positives = 192/262 (73%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           YEV+DNAIDE+L G+A  + VTLN D S TV D+GRGIP  +HKEEG+SAAEVIMT+LHA
Sbjct: 1   YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGVSAAEVIMTQLHA 60

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A
Sbjct: 61  GGKFDQNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDA 120

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y
Sbjct: 121 PGKRGTEVTFLASAETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHY 180

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DG
Sbjct: 181 SGGVEEFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDG 240

Query: 286 GTHLSGLRSALTRQITSYVEKS 307
           GTHL+G R ALTRQ+  Y + +
Sbjct: 241 GTHLAGFRGALTRQVNGYADAN 262


>gi|19912033|dbj|BAB88328.1| DNA gyrase subunit B [Cytophaga sp. MBIC04671]
 gi|19912035|dbj|BAB88329.1| DNA gyrase subunit B [Cytophaga sp. MBIC04672]
 gi|19912037|dbj|BAB88330.1| DNA gyrase subunit B [Cytophaga sp. MBIC04673]
 gi|19912039|dbj|BAB88331.1| DNA gyrase subunit B [Cytophaga sp. MBIC04674]
 gi|19912047|dbj|BAB88335.1| DNA gyrase subunit B [Cytophaga sp. MBIC04684]
 gi|19912049|dbj|BAB88336.1| DNA gyrase subunit B [Cytophaga sp. MBIC04662]
 gi|19912137|dbj|BAB88380.1| DNA gyrase subunit B [Cytophaga sp. MBIC04683]
          Length = 391

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 186/392 (47%), Positives = 257/392 (65%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ LK  + R+G ++E  +  G    P+   G   ++TGT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVHRDGKVWEQEYERGKSLYPVKSVGET-DETGTIVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIE 230
           +P   IF+    ++Y+TL +R+RELSFLN  V IS+ DKR      E    T +   G+ 
Sbjct: 60  IPDDSIFTQTTEYSYETLANRMRELSFLNKGVTISITDKRVKDKEGEYLSETFYSDAGLS 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD  ++PL+Q  I ++G ++ I +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGTREPLIQGVIAMEGEKNGIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S   +K K  V GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADSSGMLEKLKFEVQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEEHP +AK+IV+KV+ A+  R AA +AR++ +RK V+ I  L
Sbjct: 240 EVSSAVSQAVSEMLTDYLEEHPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMSIGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP + E+FLVEGDSAGG+AK GR R+ QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPAQCEVFLVEGDSAGGTAKMGRDRKFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|68480866|ref|XP_715586.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|68480977|ref|XP_715530.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437155|gb|EAK96506.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437215|gb|EAK96565.1| DNA topoisomerase II [Candida albicans SC5314]
          Length = 1461

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 146/711 (20%), Positives = 255/711 (35%), Gaps = 54/711 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +++ Q L  L+ + KRP  YIG  +                         GL+ +  E+L
Sbjct: 59  SETYQKLSQLEHILKRPDTYIGSVEKTKTEMWCFDAETESMVFKEVTIVPGLYKIFDEIL 118

Query: 50  DNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I V ++  +    V ++G+GIP ++H +E +   E+I   L    
Sbjct: 119 VNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTKENMYIPELIFGNLLTSS 178

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFINGIL-DNPLVVTG 163
            ++    KV+GG +G G  + N  S+  ++    +   G +Y+ S+ N +   +   +T 
Sbjct: 179 NYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETA-DLNMGKLYKQSWTNNMSNVSKPKITT 237

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                  T++TF P    F +   + D    L+ R+ +L     +  I L DKR      
Sbjct: 238 LRPKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNCNIYLNDKRLNISSF 297

Query: 221 ITM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                         S     +   +++   I     N   ++A   +DG    V  F N+
Sbjct: 298 KGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFNDRWEVAFAVSDGSFNQV-SFVNS 356

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I    GGTH+  +   +  ++   + K     K K  +   + R+     ++  + +P F
Sbjct: 357 IATTSGGTHVKYVSDQIINKLVETLSKK-EKGKKKLMIKPQEVRDNMFLFINCLIENPAF 415

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           +SQTKE+L +   +       +  ++     + +    IV K+   +   +     +   
Sbjct: 416 TSQTKEQLTTKVSQF---GGKDKFVANDNLINRILKTSIVDKIRAIANANEDKALQKADG 472

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGK 456
            RK  +              +D     L L EG SA   A  G S   R+     PLRGK
Sbjct: 473 SRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLAVAGLSVVGRDYYGCFPLRGK 532

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADVDGAHIR 514
           +LNV  A  D++  + EI +L   +G    +     +I  LRY  I+IMTD D DG+HI+
Sbjct: 533 LLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIKSLRYGHIMIMTDQDQDGSHIK 592

Query: 515 TLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
            L++ F     P L+   GFL     P+  +         +                E  
Sbjct: 593 GLIINFLETSFPGLLDIPGFLLEFITPIVKV-----TVKARGAGGKRVIPFYTMPEFEHW 647

Query: 574 LFCDSKGVISKNDLRNFI-----DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
              + K           +      +A +    +            E      +   +   
Sbjct: 648 RDTEGKQCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHALQGEDKDYIDLAFSKKKA 707

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           +             +   E +E      IN   IL            VL+G
Sbjct: 708 DERKEWLQGFLPGTHLDPEITEIPISDFINKELILFSMSDNVRSIPSVLDG 758


>gi|269302503|gb|ACZ32603.1| putative topoisomerase IV, B subunit [Chlamydophila pneumoniae
           LPCoLN]
          Length = 602

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 168/607 (27%), Positives = 274/607 (45%), Gaps = 55/607 (9%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           ++Y   SI  L  LD ++ R  MYIG     S    G++ +  EV+DN IDE + G+   
Sbjct: 2   AAYTEASILSLASLDHIRLRAGMYIGRLGNGSQKEDGIYTLFKEVVDNGIDEFIMGHGKS 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLH 121
           + ++   D   ++ D GRGIP             +I     ++ G K+ Q  +  S GL+
Sbjct: 62  LKIS-ASDKQISIQDQGRGIPLGK----------LIDCVSKINTGAKYTQDVFHFSVGLN 110

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+  VNALS    +R  R+   +  +F  G+L       GS  +  GT V+F P   I
Sbjct: 111 GVGLKAVNALSEIFSVRSVRKKKYHLATFHRGVLQE--SKQGSTKDPDGTFVSFTPDPSI 168

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    FN+D L+ ++R+ ++L+S ++I   D+              G++          +
Sbjct: 169 FPEFTFNHDFLKDKIRQYTYLHSGLEIRFNDEV--------FISHNGLKDLFDAEIT--E 218

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P + SP+  Q       +       +G  E    F N     DGGTHL+  + A+ + + 
Sbjct: 219 PPLYSPLFFQNED----LTFIFSHLEGNTERYFSFVNGQETLDGGTHLTAFKEAIVKGVN 274

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            +  K         + + +D REG    ++IK+  P F SQTK KL ++++RS +   V 
Sbjct: 275 EFFGK---------TFVSNDIREGIVGCIAIKIASPIFESQTKNKLGNTQIRSSLIKDVK 325

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC---- 417
           + +   L +  + A+++++K+      R   +  +   + K    +     KL DC    
Sbjct: 326 EAIVQALRKDKVAAELLLEKIKFNEKTRKNIQFIKQDLKSKQK-KVHYKIPKLRDCKFHY 384

Query: 418 --SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
                  + S +FL EG+SA  S    R+   QA+  LRGK +NV      KM  + E+ 
Sbjct: 385 NDRSLYGEASSIFLTEGESASASILASRNPLTQAVFSLRGKPMNVFSLEETKMYKNDELF 444

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L TALG            LRY+K+I+ TDADVDG HIR LL+TFF + +  L+ N  L+
Sbjct: 445 YLATALGITQNGIQH----LRYNKVILATDADVDGMHIRNLLITFFLKTLLPLVENNHLF 500

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDD 593
           I++ PL+ +    +  Y   E+     L      +           G IS  +   FI  
Sbjct: 501 ILETPLFKVRNKTTTLYCYSEQEKMQALQQFGKKDSSLEITRFKGLGEISPKEFAAFIGP 560

Query: 594 ALKIDKL 600
            +++  +
Sbjct: 561 EIRLTPV 567


>gi|115500926|dbj|BAF34133.1| DNA gyrase subunit B [Azomonas macrocytogenes]
          Length = 382

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 218/383 (56%), Positives = 284/383 (74%), Gaps = 3/383 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E  + +G+    L   G     +GTE
Sbjct: 2   SYKVSGGLHGVGVSVVNALSEELQLTIRREGKVWEQIYTHGVPKAALSPIGETE-GSGTE 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 61  IRFKPSAETFKNIHFSWDILAKRLRELSFLNSGVGILLRDERSGKD--ELFKYEGGLRAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K  + Q         D + +++A++WND ++EN+LCFTNNIP +DGGTH +G 
Sbjct: 119 VEYLNTNKTAVNQVFHFNVQRDDGVEVEVALQWNDSFNENILCFTNNIPHRDGGTHFAGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
             +LTR + SY+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV
Sbjct: 179 PFSLTRNLNSYIEQEGLAKKFKISTTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPG
Sbjct: 239 KTAVEQEMGKYFADFLLEHPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 298

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSS 
Sbjct: 299 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSA 358

Query: 473 EIGTLITALGTGIGQDSFDINKL 495
           E+GTLITALG GIG+D ++I KL
Sbjct: 359 EVGTLITALGCGIGRDEYNIEKL 381


>gi|38453817|dbj|BAD02209.1| DNA topoisomerase II [Trichophyton tonsurans]
          Length = 1089

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 142/679 (20%), Positives = 247/679 (36%), Gaps = 41/679 (6%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +     ++   +++++ N +             D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF P    F +   + D      R +  +  +   S+    +  P +    Y     
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTSVKLNGTRIPIKSFKKYMEMYT 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +                I     +   ++    +DG  + V  F N+I    GGTH++
Sbjct: 241 KAIKAERGEDSTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTHVN 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L + 
Sbjct: 300 YISDQI---CNKLADALKKKNKAGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTR 356

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
             +   +  V+D     + +  +   I+      A  +       R        L  A+ 
Sbjct: 357 ASQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANK 416

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDK 467
            G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  D+
Sbjct: 417 AG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQ 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     P+
Sbjct: 471 ISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPT 530

Query: 528 LIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           L+   GFL     P+  + +G        +         +            K       
Sbjct: 531 LLKIPGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYKGLG 590

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
             +  D  +    L +     H     E  +I   F+ +   E       +         
Sbjct: 591 TSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYLDH 649

Query: 647 EKSEKSWHGSINNSDILVK 665
              + ++   IN   IL  
Sbjct: 650 STDQITYTDFINKELILFS 668


>gi|33187347|gb|AAP97536.1| DNA gyrase subunit B [Campylobacter coli]
          Length = 368

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 183/373 (49%), Positives = 250/373 (67%), Gaps = 5/373 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L   ++R G IY   F  G + +   + G +   TGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFDIIGKSK-KTGTTI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P   IF V +F+YD L  R REL++LN  + I+  D R  +    +  ++GGI  FV
Sbjct: 60  EFWPDDTIFEVTEFDYDILAKRFRELAYLNPKITINFKDNRVGKS--ESFHFEGGISQFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           S  D +KK  +  PI      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R
Sbjct: 118 S--DLNKKEALTKPIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFR 175

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             LTR I++Y+E +  +++    + GDD REG  +V+S+K+P+P+F  QTK KL SS VR
Sbjct: 176 MGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVR 235

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +V     + LS + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGK
Sbjct: 236 PIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGK 295

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC  +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L S++
Sbjct: 296 LADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQ 355

Query: 474 IGTLITALGTGIG 486
           I  +ITA G GIG
Sbjct: 356 IQNMITAFGCGIG 368


>gi|19112597|ref|NP_595805.1| DNA topoisomerase II [Schizosaccharomyces pombe 972h-]
 gi|12644105|sp|P08096|TOP2_SCHPO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|3393015|emb|CAA20107.1| DNA topoisomerase II [Schizosaccharomyces pombe]
          Length = 1485

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 140/633 (22%), Positives = 261/633 (41%), Gaps = 57/633 (9%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDN 51
             Q L   + V +RP  YIG  +  +                      GL+ +  E++ N
Sbjct: 77  QYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIVN 136

Query: 52  AIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D  +     + + VTL+ +    ++ +NG+GIP ++H +E I   E+I   L     +
Sbjct: 137 AADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTSSNY 196

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGIL-DNPLVVTGSA 165
           +    KV+GG +G G  + N  S+   +    +      Y+ ++ + +   +  V+T   
Sbjct: 197 DDNQKKVTGGRNGYGAKLCNIFSTEFVVETA-DKERMKKYKQTWYDNMSRKSEPVITSLK 255

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             D  T++TF P    F +   + D    ++ R+ +++      ++ L ++R        
Sbjct: 256 KPDEYTKITFKPDLAKFGMDKIDDDMVSIIKRRIYDMAGTVRETKVYLNNERIS------ 309

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                G + +V           + P R+     N   D+A   +DG  + V  F NNI  
Sbjct: 310 ---ISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDGQFKQV-SFVNNIST 365

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++ + + +   I   V+K       K  V     +      ++ ++ +P F SQ
Sbjct: 366 IRGGTHVNYVANKIVDAIDEVVKKEN----KKAPVKAFQIKNYVQVFVNCQIENPSFDSQ 421

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L +       +  ++D     +++       +V++VL  +  +   + ++     +
Sbjct: 422 TKETLTTKVSAFGSQCTLSDKFLKAIKKS-----SVVEEVLKFATAKADQQLSKGDGGLR 476

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             +   +          ++  K  L L EGDSA   A  G S   R+   + PLRGK+LN
Sbjct: 477 SRITGLTKLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLN 536

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A   ++L+++EI  +   +G    +   D+  LRY  ++IMTD D DG+HI+ L++ 
Sbjct: 537 VREASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSHIKGLIIN 596

Query: 520 FFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           +     PSL+   GFL     P+   TRG  +Q        E +      +         
Sbjct: 597 YLESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYWKEAN--NNGRGWKIKY 654

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              +  +D  +       +D+ +K F+   +K 
Sbjct: 655 YKGLGTSDHDDMKSYFSDLDRHMKYFHAMQEKD 687


>gi|238507856|ref|XP_002385129.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
 gi|220688648|gb|EED45000.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
          Length = 1717

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 148/684 (21%), Positives = 258/684 (37%), Gaps = 55/684 (8%)

Query: 18  LKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAIDE 55
           L  L+ + KRP  YIG  +  S                      GL+ +  E++ NA D 
Sbjct: 124 LTQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDEIVVNAADN 183

Query: 56  ----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
               +     D I VT++ + G  +V +NGRGIP ++H +E I   E+I   L     ++
Sbjct: 184 KQNDANM---DEIRVTISRETGEISVWNNGRGIPIEMHAKEKIYVPELIFGHLLTSSNYD 240

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   +  +  R+   Y+ ++ + +          A  D
Sbjct: 241 DTQQKVTGGRNGFGAKLCNVFSTEFSIETQDSRQKKKYKQTWTSNMTKMGKAKITDAKGD 300

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
             T+VTF P    F +   + D      R +  L  + ++++    S  P      Y   
Sbjct: 301 DYTKVTFKPDYAKFGMDGMDNDFEALVKRRVYDLAGTAKVAVKLNGSRVPVRNFKKYMEM 360

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
               +        P  +    I     +   ++    +DG  + V  F N+I    GGTH
Sbjct: 361 YTKAIRRERGDDGPAAKDE--IITCSPDPRWEVGFAVSDGSFQQV-SFVNSIATTSGGTH 417

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++ +   +  ++   V+K   +     ++     R      ++ ++ +P F+SQTKE+L 
Sbjct: 418 VNYIADQICSKLADQVKKKNKNG---ATLKPAQIRNHIFIFVNAQIVNPAFTSQTKEQLT 474

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +   +   +  + +     + +  + + I+      A  +       R        L  A
Sbjct: 475 TKSSQFGSKCVLEEDFYKKILKTDVMSNILHFAQQKADQMLKKTDGGRRARMNNPKLTDA 534

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARF 465
           +  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A F
Sbjct: 535 NKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDATF 588

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           +++  + EI  +   LG    ++  D   LRY  ++IMTD D DG+HI+ LL+ F   Q 
Sbjct: 589 EQISKNAEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQF 648

Query: 526 PSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           PSL+      I    P+  + +G      K+      +          E     +G   K
Sbjct: 649 PSLLRIPEFLIEFITPIIKVWKGD----PKNPTKQRSFFTMPEYEAWKEEHKHERGWEHK 704

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN---VSLASKLANR 641
                            +D   +  +    Q    G+      ++          +    
Sbjct: 705 YYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDNEVGLIELAFSKKKADERKEWLRQFKPG 764

Query: 642 LNFIAEKSEKSWHGSINNSDILVK 665
                  S+ S+   IN   IL  
Sbjct: 765 TFLDHSVSKISYTDFINKELILFS 788


>gi|84394566|ref|ZP_00993271.1| DNA topoisomerase IV subunit B [Vibrio splendidus 12B01]
 gi|84374816|gb|EAP91758.1| DNA topoisomerase IV subunit B [Vibrio splendidus 12B01]
          Length = 535

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 176/491 (35%), Positives = 265/491 (53%), Gaps = 12/491 (2%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T+LH+GGKF+  +YK SGGLHGVG+SVVNALS  +++ ++R+G ++E++   G     L 
Sbjct: 1   TKLHSGGKFSNNNYKFSGGLHGVGISVVNALSKRVEVTVRRDGQVHEIALEGGHAVTDLT 60

Query: 161 VTGSAGN-DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
           VTG+ G+ +TGT V F P    F    F+   L + LR  + L   ++I+ +DK   E  
Sbjct: 61  VTGTCGHRNTGTTVHFWPDPKYFDSSKFSVLRLINNLRAKAVLCPGLEITFVDKVGGEEH 120

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPI--RIQGSRDNISIDLAMRWNDGYHENVLCFT 277
           +     + G++ +++   +    L + P         +  +    +   +G       + 
Sbjct: 121 KWYY--EDGLKDYLAEGVKGYTLLPEEPYVGEFVAETEMANW-AIIWQPEGGDMITESYV 177

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N +P K GGTH++GLR  L   +  + E      +    + GDD  +  + VLS+KM DP
Sbjct: 178 NLVPTKQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGDDIFDRCSYVLSVKMQDP 236

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F+ QTKE+L S +  + V   V D  S WL E P  A+++ +  +  +       RA  
Sbjct: 237 QFAGQTKERLSSRQTAAFVSGVVKDAFSLWLNEKPQLAELLAEACIANAH---RRMRASK 293

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
              RK +    +LPGKL DCS +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKI
Sbjct: 294 KVVRKKIASGPALPGKLTDCSVQDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKI 353

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LN      D++L+SQE+  +  ++  GI  D+ D++ LRY KI I+ DAD DG HI TLL
Sbjct: 354 LNTWEVSADQVLASQEVHDI--SVALGIDPDNDDLSGLRYGKICILADADSDGLHIATLL 411

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
              F R   +L+  G +Y+  PPLY I  GK + Y  D+   +  L   S  +       
Sbjct: 412 CALFTRHFHALVEAGHIYVAMPPLYRIDCGKEVFYALDDSEKDGVLERLSQKKAKINVQR 471

Query: 578 SKGVISKNDLR 588
            KG+   N L+
Sbjct: 472 FKGLGEMNPLQ 482



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRR 789
           +  I++QR+KGLGEMN  QL ETT++P+TR L+++ I D    +++   L+G +  + RR
Sbjct: 464 KAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDNDATNEMMDMLLGKKRADDRR 523

Query: 790 EFIQEN 795
            ++Q N
Sbjct: 524 TWLQTN 529


>gi|90903300|gb|ABE02215.1| gyrase B [Mycobacterium tuberculosis H37Rv]
          Length = 424

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 179/426 (42%), Positives = 252/426 (59%), Gaps = 33/426 (7%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF   +Y +SGGLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G+  
Sbjct: 2   GKFGSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPT 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------ 214
             TG+ V F     +F   +++++ +  RL+E++FLN  + I+L D+R            
Sbjct: 60  KKTGSTVRFWADPAVFEPTEYDFEAVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVS 119

Query: 215 ------------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
                               + +  T  Y GG   FV +++R K  +  S +   G    
Sbjct: 120 DVAEAPKSASERAAESTAPHKVKSRTFHYPGGPVDFVKHINRTKNAIHSSIVDFSGKGTG 179

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             +++AM+WN GY E+V  F N I   +GG H  G RSALT  +  Y +     K    +
Sbjct: 180 HEVEIAMQWNAGYSESVHTFANTINTHEGGRHEEGFRSALTSVVNKYAKDRKLLKDKDPN 239

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           + GDD REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK
Sbjct: 240 LTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAK 299

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           ++V K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAG
Sbjct: 300 VVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAG 359

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLR
Sbjct: 360 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLR 418

Query: 497 YHKIII 502
           YHKI++
Sbjct: 419 YHKIVL 424


>gi|38453823|dbj|BAD02212.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 141/679 (20%), Positives = 247/679 (36%), Gaps = 41/679 (6%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +     ++   +++++ N +             D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y     
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMYT 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +                I     +   ++    +DG  + V  F N+I    GGTH++
Sbjct: 241 KAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTHVN 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L + 
Sbjct: 300 YISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTR 356

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
             +   +  V+D     + +  +   I+      A  +       R        L  A+ 
Sbjct: 357 PSQFGSKCAVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANK 416

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDK 467
            G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  D+
Sbjct: 417 AG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQ 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     P+
Sbjct: 471 ISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPT 530

Query: 528 LIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           L+   GFL     P+  + +G        +         +            K       
Sbjct: 531 LLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKKYYKGLG 590

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
             +  D  +    L +     H     E  +I   F+ +   E       +         
Sbjct: 591 TSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYLDH 649

Query: 647 EKSEKSWHGSINNSDILVK 665
              + ++   IN   IL  
Sbjct: 650 STDQITYTDFINKELILFS 668


>gi|239735453|dbj|BAH70493.1| gyrase B subunit [Cardinium endosymbiont of Indozuriel dantur]
          Length = 422

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 204/423 (48%), Positives = 288/423 (68%), Gaps = 9/423 (2%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS+ L++ + R G IY+ ++  GI   P+   G   +  GT + F P   IF+   +N  
Sbjct: 1   LSTHLEVTVYRNGKIYKQAYAQGIPRYPVQEVG-TTDLRGTTLHFTPDPSIFTTTVYNLH 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           T+ +RL+EL++LN  +Q+ L D R  +    P   T   +GG+  FV++LD  K  +M  
Sbjct: 60  TIVNRLQELAYLNIGLQMQLEDLRERDEQGNPFSQTFHSEGGLLEFVAHLDSTKVAIMPM 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI ++G ++N+ + +AM +N GY E V+ + NNI   +GG H++G R ALTR + SY +K
Sbjct: 120 PILVEGEKNNVVVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFRRALTRTLKSYADK 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           S   +K K  ++GDD REG T+V+S+K+ +P+F  QTK KL ++EV+S VES V + L  
Sbjct: 180 SGLLEKAKIEIVGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQSAVESCVGEVLHY 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEEHP EAK+I+ KV+ A+  R AAR+AR++ +RK VL   SLPGKLADCSERDP   E
Sbjct: 240 YLEEHPKEAKLIINKVIIAAQARQAARKAREMVQRKNVLMSNSLPGKLADCSERDPALCE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  K+  ++++  +ITALG  +G
Sbjct: 300 LFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQTYKIYDNEQVRNMITALGISMG 359

Query: 487 ----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
               + +  ++KLRYHKI+IMTDADVDG+HIRTL+LTFFFR M  +I  G+LYI  PPLY
Sbjct: 360 TDGNEQAIHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYMRDIIEKGYLYIASPPLY 419

Query: 543 GIT 545
            + 
Sbjct: 420 LVK 422


>gi|213407866|ref|XP_002174704.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
 gi|212002751|gb|EEB08411.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
          Length = 1499

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 129/632 (20%), Positives = 254/632 (40%), Gaps = 59/632 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +   Q +   + V +RP  YIG  +                         GL+ +  E++
Sbjct: 71  SQQYQRISPREHVLRRPDTYIGSVEKTEMPMWVYDSEQNKMVYKEVNIVPGLYKIFDEII 130

Query: 50  DNAIDESLEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +     + + V ++ +    +V +NG+GIP ++H++EGI   E+I   L    
Sbjct: 131 VNAADNKVRDPTMNTLKVEIDPEANVISVYNNGKGIPVEIHEKEGIYIPELIFGHLLTSS 190

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSF-INGILDNPLVVTG 163
            ++    KV+GG +G G  + N  S    +    +      Y+ ++  N    +   V  
Sbjct: 191 NYDDNQKKVTGGRNGYGAKLCNIFSHEFTVETA-DKLRMKKYKQTWTENMSKKSEPKVVD 249

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
               D  T++TF P    F +   + D    ++ R+ +++     +++ L ++R      
Sbjct: 250 MKRADEYTKITFKPDLAKFGMTKLDDDLVSVVKRRVYDMAGTIPDIKVFLNNERINIKNF 309

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                       +       +     P  I   R N   ++A   +DG  +N+  F N+I
Sbjct: 310 RKYV-------ELFVSSLRNRTDSTKPPTILYDRPNERWEVAYTLSDGQFKNI-SFVNSI 361

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
               GGTH++ +   + +++ +   K         ++     +      ++ ++ +P F 
Sbjct: 362 ATTRGGTHVNYVADEIVKRVQAEFSKKN----KHAALKPFQIKNNLWLFINCQIVNPSFD 417

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTKE L +       +  ++D     L +       I+    + +  +   + ++   +
Sbjct: 418 SQTKETLTTKPSAFGSKCDLSDTFFKQLIKSE-----IIAVCSELAKAKADQQMSKTDGK 472

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRG 455
            +  +              R+ KK  L L EGDSA      G    GR      + PLRG
Sbjct: 473 SRSRITGLPKLSDANKAGTRESKKCTLILTEGDSAKTLVVSGLGVVGRD--YYGVYPLRG 530

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNV  A ++++++++EI  +   LG    +     + LRY  ++IMTD D DG+HI+ 
Sbjct: 531 KLLNVREASYNQIINNKEIQAIKKILGLAHNKKYTSTDGLRYGHLMIMTDQDHDGSHIKG 590

Query: 516 LLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           L++ +     PSL+H  GFL     P+    +G+ +         + +  N   +     
Sbjct: 591 LIINYLESTYPSLLHLEGFLIEFITPIVRCRKGREIISFFTLPEFDYWKENN--NNGRGW 648

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
                  +  +D ++  +    +D+ IK F+ 
Sbjct: 649 SIKYYKGLGTSDAKDMKEYFSALDRHIKQFHT 680


>gi|119369908|gb|ABL67968.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 428

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 172/433 (39%), Positives = 244/433 (56%), Gaps = 17/433 (3%)

Query: 97  EVIMTRLHAGGKFNQK----SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           EVIMT LHA GKF+ +    +YK SGGLHGVG SVVNALS+ L + IKR+G  +   F  
Sbjct: 1   EVIMTVLHAAGKFDNETGESAYKTSGGLHGVGASVVNALSTRLTMEIKRDGFTWHQEFRG 60

Query: 153 G-ILDNPLVVTGSAGNDTGTEVTFLPSSDIF------SVQDFNYDTLQHRLRELSFLNSS 205
           G      L   G    + GT + F P   IF          F+ + +   L   + LN  
Sbjct: 61  GGEPVAELA-MGKPSREHGTTIRFWPDPTIFVPEEGQDPLSFDKERVARSLSTRAHLNPG 119

Query: 206 VQISLIDKRSP-EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
           + I++ID+R   E       +   ++   +         +     +   +  + + +A+R
Sbjct: 120 LAITMIDERDGSEQTWKAESFAEILDDLATVSSAPVFGPLSETAAVDTDKGRVEVMVALR 179

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
            +      +  + NNI    GGTH +G+RSAL + I +Y + +      K  +  +D +E
Sbjct: 180 VHAERASTIASYANNIVTPQGGTHEAGMRSALLKAINAYGKTNGLL---KEPLTAEDVQE 236

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  + +++++ +P F+ QTK+KL ++E    V   V   LS   EE+P +AK ++ +   
Sbjct: 237 GLVAAVAVRVTEPLFAGQTKDKLANTECTGAVMQVVYRLLSKHFEENPKDAKNLINRAAL 296

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AA +AR+L  RK  L    LPGKLADC E DP   EL++VEGDSAGGSAKQGR 
Sbjct: 297 AAKARAAAEKARELVERKNPLSGGGLPGKLADCQESDPSLCELYIVEGDSAGGSAKQGRD 356

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R+ QAILPL+GK LNV +    K L SQEI  + T LG G+  ++FDI+KLRYH++IIMT
Sbjct: 357 RKFQAILPLKGKPLNVMKYDMGKALKSQEISNITTVLGCGV-LNTFDISKLRYHRVIIMT 415

Query: 505 DADVDGAHIRTLL 517
           DADVDG+HIRTLL
Sbjct: 416 DADVDGSHIRTLL 428


>gi|87299380|dbj|BAE79512.1| gyrase B subunit [Terrimonas lutea]
          Length = 404

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 196/405 (48%), Positives = 266/405 (65%), Gaps = 13/405 (3%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVS VNALS+ L + ++REG I+E  +  G+    +   G   + TGT V 
Sbjct: 1   KVSGGLHGVGVSCVNALSTRLHVTVQREGKIFEQEYHIGVPQYSVREIG-TSDVTGTRVH 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIE 230
           F P   IF+   +N D L+ RLREL+FLN  V+I L D             + + +GGI 
Sbjct: 60  FWPDGSIFTTTVYNKDILEGRLRELAFLNRGVRIILTDLREKNEDGTDYSKSFYSEGGIV 119

Query: 231 AFVSYLDRH--KKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            FV  LD +  +  L+   I ++G   + N+++++A+ +ND Y E++  + NNI   +GG
Sbjct: 120 EFVEMLDTNAGRTTLIPKVISVEGRDEKTNVAVEVALSYNDSYSEHIYSYVNNINTIEGG 179

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH+SG R ALTR   SY +K+   +K K  + GDD REG ++++S+K+P+P+F  QTK K
Sbjct: 180 THVSGFRRALTRVFKSYGDKNGLFEKAKVEIEGDDFREGLSAIISVKVPEPQFEGQTKTK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV  VV+S V+  L A+LEE+P EAK IV KV+ A+  R AAR+AR+L +RK VL 
Sbjct: 240 LGNNEVTGVVDSTVSKVLEAYLEENPKEAKNIVAKVILAAQARAAARKARELVQRKTVLT 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              LPGKLADCS+RDP + ELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   
Sbjct: 300 GGGLPGKLADCSDRDPDRCELFLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMEH 359

Query: 467 KMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDAD 507
           K+  ++EI  + TALG  +G        ++ KLRYHK+IIMTDAD
Sbjct: 360 KIYENEEIRNMYTALGVTVGTPEDPKALNLAKLRYHKLIIMTDAD 404


>gi|19909657|dbj|BAB87024.1| DNA gyrase subunit B [Variovorax paradoxus]
          Length = 423

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 224/426 (52%), Positives = 298/426 (69%), Gaps = 36/426 (8%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DN 157
           +Q SYKVSGGLHGVGVS VNALS  L+L ++REG I+E+ F  G +             +
Sbjct: 1   DQNSYKVSGGLHGVGVSCVNALSVKLRLIVRREGKIHELEFSRGFVQNRLLETVNGFEVS 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           P+ V G   +  GTEV FLP ++IF   + F+Y+ L  RLRELSFLN+ V+I L+D+R+ 
Sbjct: 61  PMKVIGDT-DKRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNNGVRIRLLDERTG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWN 266
           +         GG+  FV ++++ K  L  +     G +           +I +++AM+WN
Sbjct: 120 KE--DDFSGAGGVRGFVEFINKGKTVLHPNSFYAAGEKPADTYGGIPGTHIGVEVAMQWN 177

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            GY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD REG 
Sbjct: 178 SGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGL 237

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
             VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +L+E P +AKII  K+++A+
Sbjct: 238 CCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDYLQERPNDAKIICGKIVEAA 297

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R+AAR+AR++TRRKGVLD   LPGKLADC E+DP   E++LVEGDSAGGSAKQGR R+
Sbjct: 298 RAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRK 357

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLR 496
            QAILPLRGKILNVE+AR++K+L+S EI T+ITALGTGIG+          D F++ KLR
Sbjct: 358 FQAILPLRGKILNVEKARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLR 417

Query: 497 YHKIII 502
           YH+III
Sbjct: 418 YHRIII 423


>gi|5121|emb|CAA27857.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 1431

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 140/633 (22%), Positives = 261/633 (41%), Gaps = 57/633 (9%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDN 51
             Q L   + V +RP  YIG  +  +                      GL+ +  E++ N
Sbjct: 23  QYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIVN 82

Query: 52  AIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D  +     + + VTL+ +    ++ +NG+GIP ++H +E I   E+I   L     +
Sbjct: 83  AADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTSSNY 142

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGIL-DNPLVVTGSA 165
           +    KV+GG +G G  + N  S+   +    +      Y+ ++ + +   +  V+T   
Sbjct: 143 DDNQKKVTGGRNGYGAKLCNIFSTEFVVETA-DKERMKKYKQTWYDNMSRKSEPVITSLK 201

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             D  T++TF P    F +   + D    ++ R+ +++      ++ L ++R        
Sbjct: 202 KPDEYTKITFKPDLAKFGMDKIDDDMVSIIKRRIYDMAGTVRETKVYLNNERIS------ 255

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                G + +V           + P R+     N   D+A   +DG  + V  F NNI  
Sbjct: 256 ---ISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDGQFKQV-SFVNNIST 311

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++ + + +   I   V+K       K  V     +      ++ ++ +P F SQ
Sbjct: 312 IRGGTHVNYVANKIVDAIDEVVKKEN----KKAPVKAFQIKNYVQVFVNCQIENPSFDSQ 367

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L +       +  ++D     +++       +V++VL  +  +   + ++     +
Sbjct: 368 TKETLTTKVSAFGSQCTLSDKFLKAIKKS-----SVVEEVLKFATAKADQQLSKGDGGLR 422

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             +   +          ++  K  L L EGDSA   A  G S   R+   + PLRGK+LN
Sbjct: 423 SRITGLTKLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLN 482

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A   ++L+++EI  +   +G    +   D+  LRY  ++IMTD D DG+HI+ L++ 
Sbjct: 483 VREASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSHIKGLIIN 542

Query: 520 FFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           +     PSL+   GFL     P+   TRG  +Q        E +      +         
Sbjct: 543 YLESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYWKEAN--NNGRGWKIKY 600

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
              +  +D  +       +D+ +K F+   +K 
Sbjct: 601 YKGLGTSDHDDMKSYFSDLDRHMKYFHAMQEKD 633


>gi|239735451|dbj|BAH70492.1| gyrase B subunit [Cardinium endosymbiont of Euides speciosa]
          Length = 422

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 205/423 (48%), Positives = 288/423 (68%), Gaps = 9/423 (2%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS+ L++ + R G IY+ ++  GI   P+   G   +  GT V F P   IF+   +N  
Sbjct: 1   LSTHLEVTVYRNGKIYKQAYAQGIPRYPVQEVG-TTDLRGTTVHFTPDPSIFTTTVYNLH 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           T+ +RL+EL++LN  +Q+ L D R  +    P   T   +GG+  FV++LD  K  +M  
Sbjct: 60  TIVNRLQELAYLNIGLQMQLEDLRERDEQGNPFSQTFHSEGGLLEFVAHLDSTKVAIMPM 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI ++G ++N+ + +AM +N GY E V+ + NNI   +GG H++G R ALTR + SY +K
Sbjct: 120 PILVEGEKNNVVVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFRRALTRTLKSYADK 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           S   +K K  ++GDD REG T+V+S+K+ +P+F  QTK KL ++EV+S VES V + L  
Sbjct: 180 SGLLEKAKIEIVGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQSAVESCVGEVLHY 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEEHP EAK+I+ KV+ A+  R AAR+AR++ +RK VL   SLPGKLADCSERDP   E
Sbjct: 240 YLEEHPKEAKLIINKVIIAAQARQAARKAREMVQRKNVLMSNSLPGKLADCSERDPALCE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGG+AK GR+R  QAILPL+GKILNVE+A+  K+  ++++  +ITALG  +G
Sbjct: 300 LFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQTYKIYDNEQVRNMITALGISMG 359

Query: 487 ----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
               + +  ++KLRYHKI+IMTDADVDG+HIRTL+LTFFFR M  +I  G+LYI  PPLY
Sbjct: 360 TDGNEQAIHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYMRDIIEKGYLYIASPPLY 419

Query: 543 GIT 545
            + 
Sbjct: 420 LVK 422


>gi|207108886|ref|ZP_03243048.1| DNA gyrase subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 215

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 106/210 (50%), Positives = 144/210 (68%), Gaps = 3/210 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT + F P   +  V 
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSDLEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
           +F    LQ R +E+++LN  ++IS  ++++
Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT 210


>gi|322379799|ref|ZP_08054096.1| DNA gyrase subunit B [Helicobacter suis HS5]
 gi|321147767|gb|EFX42370.1| DNA gyrase subunit B [Helicobacter suis HS5]
          Length = 373

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 160/399 (40%), Positives = 229/399 (57%), Gaps = 28/399 (7%)

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           + +LPGKLADC  +DPK+SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++   
Sbjct: 1   MGTLPGKLADCQSKDPKESEIYLVEGDSAGGSAKQGRDRTYQAILPLRGKILNVEKSHLS 60

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           K+L S+EI  +ITA G G+G++ F++ KLRYHKIIIMTDADVDG+HI+TLL+TFF+R + 
Sbjct: 61  KILKSEEIKNMITAFGCGVGEE-FNLEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLK 119

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            LI NG +YI +PPLY   + K  +Y+KDE+ L  +LI   +             I ++D
Sbjct: 120 PLIANGHVYIAQPPLYRFKKKKIEKYLKDEKELNHFLIEHGIDSAQI------EGIGRSD 173

Query: 587 LRNFIDDALKIDKLIKDFYPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
           L   +        ++K+          +   V S        +     LA+K+ + L  I
Sbjct: 174 LLALLKTLSAYRFVLKELEKRPLMPEVLRYLVESP------QRLSLEVLAAKIHDLLEKI 227

Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705
                   H  ++ S     +   G+ E  +++ +          +    +I+E  L+ L
Sbjct: 228 H--CHVLSHQILDQSLHFFVQTKTGLVE-LLIDEALFSDPLFLEAKALVQKIQEFDLSCL 284

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           ++               L++I    ++G  +QRYKGLGEMN  QLWETT++   R+LLRV
Sbjct: 285 NM----------DALDFLESIEERAKQGAYIQRYKGLGEMNPEQLWETTMSAANRNLLRV 334

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
            + D   A + F+ LMGDEVEPRR++IQ ++     LDI
Sbjct: 335 SLEDEQSAHEAFNLLMGDEVEPRRDYIQAHARDVKHLDI 373


>gi|168033077|ref|XP_001769043.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679677|gb|EDQ66121.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1172

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 138/693 (19%), Positives = 262/693 (37%), Gaps = 69/693 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            ++ Q    L+ +  RP  Y+G  +  +                    GL+ +  E+L N
Sbjct: 28  EETYQKKTQLEHILLRPDTYVGSIEKHTQSLWVYEDEKMVNRSVTFVPGLYKIFDEILVN 87

Query: 52  AIDE-----SLEGYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + V ++  +   +V +NG G+P ++HKEEG+   E+I   L  
Sbjct: 88  AADNKQRDPSM----DTVKVEIDVENNFISVFNNGDGVPVEIHKEEGVYVPEMIFGHLLT 143

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN---IYEMSFINGIL-DNPLVV 161
              +N    K +GG +G G  + N  S+   +    +G     Y+  F N +   +   +
Sbjct: 144 SSNYNDSEKKTTGGRNGYGAKLANIFSTEFTIETA-DGKRLRRYKQVFTNNMSLKSEPKI 202

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           T    N+  T+V+F P    F++     D +    + +  +   +      + + +    
Sbjct: 203 TTCKANENWTKVSFKPDLSKFNMTHLESDVVALMSKRVMDVAGCLGKGCKVELNGKR--- 259

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                   + +V           + P+     R +   ++ +  +DG    V  F N+I 
Sbjct: 260 --LPIKSFQDYVGLYLSVANAGREEPLPRIYERVSDRWEVCVSLSDGQFNQV-SFCNSIA 316

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   +   + + V K   +   K        +      ++  + +P F S
Sbjct: 317 TIRGGTHVAYVTDQIVTHVLALVNKKNKTAGVK----PFQIKNHMWVFVNALIDNPTFDS 372

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE L +            +    +L++       +V+ VL  +  + +    ++   +
Sbjct: 373 QTKETLTTRASSF---GSKCELSPEFLKKVAKCG--VVENVLTWADFKQSKELKKNDGAK 427

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
           +  +          D   +  +K  L L EGDSA   A  G S   R+   + PLRGK+L
Sbjct: 428 RQRITGIPKLDDANDAGGKSSEKCTLILTEGDSAKALAMSGISVVGRDKYGVFPLRGKLL 487

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A   +++ + EI  +   LG   G+D      LRY  ++IMTD D DG+HI+ LL+
Sbjct: 488 NVREASHKQIMENAEITNIKRILGLQHGKDYDSTKSLRYGHLMIMTDQDHDGSHIKGLLI 547

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            F     PSL+      +    P+   T  +           E +  + +         +
Sbjct: 548 NFIHSFWPSLLKIPSFLVEFITPIVKATNKQKTLSFYTMPEYEAWKESLN--------GE 599

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +KG   K         + +  +  ++   +      E  +          ++   +  + 
Sbjct: 600 TKGWTIKYYKGLGTSTSKEGKEYFRELVKHKKDFKWESEMDGDAIEMAFSKKKIEARKTW 659

Query: 638 LANR-----LNFIAEKSEKSWHGSINNSDILVK 665
           L +      L+  AEK   ++   +N   IL  
Sbjct: 660 LRHYEPGTFLDMTAEKI--NYRDFVNKELILFS 690


>gi|146164139|gb|ABQ08734.1| DNA gyrase subunit beta [Aeromonas bivalvium]
 gi|146164141|gb|ABQ08735.1| DNA gyrase subunit beta [Aeromonas bivalvium]
          Length = 368

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 222/370 (60%), Positives = 283/370 (76%), Gaps = 2/370 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PSS 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSST 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+YD L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFSDTLFHYDILAKRLRELSFLNSGVSIRLEDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSF 490
           LG GIG+D +
Sbjct: 359 LGCGIGRDEY 368


>gi|38453809|dbj|BAD02205.1| DNA topoisomerase II [Arthroderma vanbreuseghemii]
          Length = 1089

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 141/679 (20%), Positives = 247/679 (36%), Gaps = 41/679 (6%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +     ++   +++++ N +             D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y     
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMYT 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +                I     +   ++    +DG  + V  F N+I    GGTH++
Sbjct: 241 KAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTHVN 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L + 
Sbjct: 300 YISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTR 356

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
             +   +  V+D     + +  +   I+      A  +       R        L  A+ 
Sbjct: 357 ASQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANK 416

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDK 467
            G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  D+
Sbjct: 417 AG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQ 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     P+
Sbjct: 471 ISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPT 530

Query: 528 LIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           L+   GFL     P+  + +G        +         +            K       
Sbjct: 531 LLKIPGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYKGLG 590

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
             +  D  +    L +     H     E  +I   F+ +   E       +         
Sbjct: 591 TSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYLDH 649

Query: 647 EKSEKSWHGSINNSDILVK 665
              + ++   IN   IL  
Sbjct: 650 STDQITYTDFINKELILFS 668


>gi|38453805|dbj|BAD02203.1| DNA topoisomerase II [Arthroderma fulvum]
          Length = 1086

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 141/682 (20%), Positives = 248/682 (36%), Gaps = 49/682 (7%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDSNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEHIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +          +++++ N +          +  D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSTEFTVETADSSNKKKFKLTWTNNMSTMGKAKITESKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T+VTF P    F +   + D    ++ R+ +++       + L   R P           
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCG-TTVKLNGTRIPIKTFKKYMEMY 239

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                 +      +        I     +   ++    +DG  + V  F N+I    GGT
Sbjct: 240 TK----AIKTERGEDPTSDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGT 294

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++ +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L
Sbjct: 295 HVNYISDQI---CNKLADALKKKNKTGATLKPAQIKNHIFLFVNSQIVNPAFTSQTKEQL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +   +   +  V+D     + +  +   I+      A  +       R        L  
Sbjct: 352 TTRSSQFGSKCIVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTD 411

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERAR 464
           A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV  A 
Sbjct: 412 ANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDAS 465

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +    
Sbjct: 466 VDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVA 525

Query: 525 MPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            P+L+   GFL     P+  + +G        +         +            K    
Sbjct: 526 FPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKKYYK 585

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                +  D  +    L +     H     E  +I   F+ +   E       +      
Sbjct: 586 GLGTSSTEDAQVYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTY 644

Query: 644 FIAEKSEKSWHGSINNSDILVK 665
                 + ++   IN   IL  
Sbjct: 645 LDHSMDQITYTDFINKELILFS 666


>gi|83683056|emb|CAJ47372.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 372

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 216/374 (57%), Positives = 280/374 (74%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TG+EV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGSEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R          Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|89898785|ref|YP_515895.1| DNA topoisomerase IV subunit B [Chlamydophila felis Fe/C-56]
 gi|89332157|dbj|BAE81750.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56]
          Length = 602

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 163/606 (26%), Positives = 267/606 (44%), Gaps = 53/606 (8%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           ++Y   S+  L  L+ ++ R  MYIG     S    G++ +  EV+DNAIDE + G+   
Sbjct: 2   ATYTEASVVSLASLEHIRLRAGMYIGRLGDGSQIEDGIYTLFKEVVDNAIDEFIMGHGKT 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLH 121
           I+++ N   + TV D+GRGIP             VI     ++ G K+ Q  +  S GL+
Sbjct: 62  ISISTNAT-TITVRDSGRGIPLGK----------VIDCVSKINTGAKYTQDVFHFSVGLN 110

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+  VNALS    +R  R+   +  +F  GIL N     GS  +  GTE+TF P + I
Sbjct: 111 GVGLKAVNALSETFTVRSVRKKQYHYATFCKGILQNSHQ--GSTKDPDGTEITFSPDATI 168

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+   FN + L+ ++R  ++L+  ++I   ++            + G+            
Sbjct: 169 FTNFSFNDEFLRKKIRRYTYLHPGLEIICNNEV--------FLSQQGLLDLFKEEVPEDT 220

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
                         N  +       + ++E    F N     DGGTHL+  + A+ + I 
Sbjct: 221 LYPPITF------QNSELSFLFTHAETHNERYFSFVNGQETIDGGTHLAAFKEAIVKGIN 274

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  KS            +D R G    ++IK+  P F SQTK KL ++++R  +   V 
Sbjct: 275 EYFGKS---------FASNDIRNGLIGCIAIKIASPIFESQTKNKLGNTQIRPGIIKDVK 325

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR-----ARDLTRRKGVLDIASLPGKLAD 416
             +   L+++   A +++ K+      R   +           +    +          +
Sbjct: 326 SAIIQELKKNKPYADLLLNKIKLNEKTRKNIQFLKQDLKDKQKKLHYKIPKLRDCKFHYN 385

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
                 + S +F+ EG+SA  S    R+   QA+  LRGK LNV     +KM  + E+  
Sbjct: 386 ERSLYGEASSIFVTEGESASASILSSRNPLTQAVFSLRGKPLNVFSLEEEKMYKNDELFY 445

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
           L TALG            LRY+KII+ TDADVDG HIR LL+TFF +    ++ N  L+I
Sbjct: 446 LATALGI----TKNSTQLLRYNKIILATDADVDGMHIRNLLITFFLKTFLPIVENRHLFI 501

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDDA 594
           ++ P++ +   ++  Y   E+   D +      E           G IS  + + FI   
Sbjct: 502 LETPVFKVRYKETTLYCYSEQEKTDAIRKLRKKETALEVTRFKGLGEISPKEFKTFIGAD 561

Query: 595 LKIDKL 600
           +++  +
Sbjct: 562 MRLTPV 567


>gi|38453811|dbj|BAD02206.1| DNA topoisomerase II [Trichophyton quinckeanum]
          Length = 1089

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 141/679 (20%), Positives = 247/679 (36%), Gaps = 41/679 (6%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +     ++   +++++ N +             D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y     
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMYT 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +                I     +   ++    +DG  + V  F N+I    GGTH++
Sbjct: 241 KAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTHVN 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L + 
Sbjct: 300 YISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTR 356

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
             +   +  V+D     + +  +   I+      A  +       R        L  A+ 
Sbjct: 357 TSQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANK 416

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDK 467
            G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  D+
Sbjct: 417 AG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQ 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     P+
Sbjct: 471 ISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPT 530

Query: 528 LIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           L+   GFL     P+  + +G        +         +            K       
Sbjct: 531 LLKIPGFLIEFITPIVKVWKGSPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYKGLG 590

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
             +  D  +    L +     H     E  +I   F+ +   E       +         
Sbjct: 591 TSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYLDH 649

Query: 647 EKSEKSWHGSINNSDILVK 665
              + ++   IN   IL  
Sbjct: 650 STDQITYTDFINKELILFS 668


>gi|295315337|gb|ADF97755.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 386

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 190/388 (48%), Positives = 275/388 (70%), Gaps = 3/388 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVG SVVNALS+ L + + R+G I+  ++  G+    + V     + TGT  
Sbjct: 1   YKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPMADVEVI-GDTDTTGTIT 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF+    ++YD L +R+REL+FL   V+I++ DKR  + R+    Y+GGI+++
Sbjct: 60  HFVPDPEIFTETTEYDYDLLSNRVRELAFLTKGVKITIEDKREEKERKNEYCYEGGIKSY 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+R K+ + + PI I+G++D I++++A+++ND Y  N+  F NNI   +GGTH +G 
Sbjct: 120 VEYLNRSKEVVHEEPIYIEGTKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGF 179

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K    K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 180 KTGLTRVINDYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 239

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R++ ++  ++ L  +L E+P  A+ ++ K L A+  R AA++AR+LTRRK  L+I++LPG
Sbjct: 240 RTITDALFSEALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPG 299

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS +DP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ 
Sbjct: 300 KLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNN 359

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKI 500
           E+ ++ITALGTGIG+D F++ K RYHK+
Sbjct: 360 EVRSMITALGTGIGED-FNLEKARYHKV 386


>gi|19912093|dbj|BAB88358.1| DNA gyrase subunit B [Cytophaga sp. T-565]
          Length = 391

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 182/392 (46%), Positives = 253/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  L   + R+G I++  +  G    P+   G    D GTEVTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETE-DRGTEVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGIE 230
            P + IF+    ++Y+TL +R+RELSFLN  V I++ DKR  + +        +   G+ 
Sbjct: 60  HPDNTIFTQTTEYSYETLANRMRELSFLNKGVTITITDKRQKDEKGDYVGETFYSNEGLR 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD +++PL+Q  I ++G ++NI +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGNREPLIQGVIAMEGEKNNIPVEVAMMYNTSYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA +AR++ +RK V+    L
Sbjct: 240 EVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMSGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP+K E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNMYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|2501297|sp|P87078|TOP2_CANAL RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|2113829|emb|CAA71405.1| topoisomerase II [Candida albicans]
          Length = 1461

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 146/711 (20%), Positives = 255/711 (35%), Gaps = 54/711 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +++ Q L  L+ + KRP  YIG  +                         GL+ +  E+L
Sbjct: 59  SETYQKLSQLEHILKRPDTYIGSVEKTKTEMWCFDAETESMVFKEVTIVPGLYKIFDEIL 118

Query: 50  DNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I V ++  +    V ++G+GIP ++H +E +   E+I   L    
Sbjct: 119 VNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTKENMYIPELIFGNLLTSS 178

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFINGIL-DNPLVVTG 163
            ++    KV+GG +G G  + N  S+  ++    +   G +Y+ S+ N +   +   +T 
Sbjct: 179 NYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETA-DLNMGKLYKQSWTNNMSNVSKPKITT 237

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                  T++TF P    F +   + D    L+ R+ +L     +  I L DKR      
Sbjct: 238 LRTKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNCNIYLNDKRLNISSF 297

Query: 221 ITM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                         S     +   +++   I     N   ++A   +DG    V  F N+
Sbjct: 298 KGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFNDRWEVAFAVSDGSFNQV-SFVNS 356

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I    GGTH+  +   +  ++   + K     K K  +   + R+     ++  + +P F
Sbjct: 357 IATTSGGTHVKYVSDQIINKLVETLSKK-EKGKKKLMIKPQEVRDNMFLFINCLIENPAF 415

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           +SQTKE+L +   +       +  ++     + +    IV K+   +   +     +   
Sbjct: 416 TSQTKEQLTTKVSQF---GGKDKFVANDNLINRILKTSIVDKIRAIANANEDKALQKADG 472

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGK 456
            RK  +              +D     L L EG SA   A  G S   R+     PLRGK
Sbjct: 473 SRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLAVAGLSVVGRDYYGCFPLRGK 532

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADVDGAHIR 514
           +LNV  A  D++  + EI +L   +G    +     +I  LRY  I+IMTD D DG+HI+
Sbjct: 533 LLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIKSLRYGHIMIMTDQDQDGSHIK 592

Query: 515 TLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
            L++ F     P L+   GFL     P+  +         +                E  
Sbjct: 593 GLIINFLETSFPGLLDIPGFLLEFITPIVKV-----TVKARGAGGKRVIPFYTMPEFEHW 647

Query: 574 LFCDSKGVISKNDLRNFI-----DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
              + K           +      +A +    +            E      +   +   
Sbjct: 648 RDTEGKQCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHALQGEDKDYIDLAFSKKKA 707

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           +             +   E +E      IN   IL            VL+G
Sbjct: 708 DERKEWLQGFLPGTHLDPEITEIPISDFINKEFILFSMSDNVRSIPSVLDG 758


>gi|115448107|ref|NP_001047833.1| Os02g0699700 [Oryza sativa Japonica Group]
 gi|113537364|dbj|BAF09747.1| Os02g0699700 [Oryza sativa Japonica Group]
          Length = 956

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 136/691 (19%), Positives = 251/691 (36%), Gaps = 63/691 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            +  Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 29  EEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVYEDGAMVSRSVTYVPGLYKIFDEILVN 88

Query: 52  AIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + V ++ D G  +V +NG GIP ++H+EEG+   E+I   L  
Sbjct: 89  AADNKQRDPSM----DSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPEMIFGHLLT 144

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVT 162
              ++    K +GG +G G  + N  S+   +     R    Y+  F   +   +   +T
Sbjct: 145 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSENMGKKSEPQIT 204

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                +  T VTF P    F++     D +    + +  +  ++  ++  +   +   + 
Sbjct: 205 KCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRKRVVDMAGTLGKTVKVELDHQKVPVH 264

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             +   ++ ++    + +  + + P   Q   D   + +++          + F N I  
Sbjct: 265 -SFSDYVKLYIKSASKDRDDVNELPSISQKVNDRWEVCVSLSEG---QFQQVSFVNRIAT 320

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH+  + + +   + + V K   +   K        +      ++  + +P F SQ
Sbjct: 321 IKGGTHVDYVTNQIATHVMNIVNKRNKNAHMKAHN----VKSHLWVFVNALIDNPAFDSQ 376

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L + +      SF +    +      + +  IV  +L  +  + +    +    ++
Sbjct: 377 TKETLTTRQA-----SFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKELQKTDGSKR 431

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             L              +D     L L EGDSA   A  G S   R+   + PLRGK+LN
Sbjct: 432 SRLTGIPKLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFPLRGKLLN 491

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A   +++ + EI  +   LG   G+       LRY  ++IMTD D DG+HI+ LL+ 
Sbjct: 492 VREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQDHDGSHIKGLLIN 551

Query: 520 FFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           F     PSLI      +    P+   T  +  + V    S+ +Y                
Sbjct: 552 FIHSFWPSLIKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPEYEQW------------- 598

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           K  +  N     I     +          + +   +        N + D +I ++ + K 
Sbjct: 599 KESLGGNASGWSIKYYKGLGTSTSSEGRQYFQDIAKHKKDFVWKNDQDDNDIELAFSKKR 658

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
                      +   H       I       
Sbjct: 659 ITDRKEWLTNFQSGTHLDTEGKYIKYSDFIN 689


>gi|15618625|ref|NP_224911.1| DNA topoisomerase IV subunit B [Chlamydophila pneumoniae CWL029]
 gi|15836247|ref|NP_300771.1| DNA topoisomerase IV subunit B [Chlamydophila pneumoniae J138]
 gi|16752325|ref|NP_444583.1| DNA topoisomerase IV subunit B [Chlamydophila pneumoniae AR39]
 gi|33242074|ref|NP_877015.1| DNA topoisomerase IV subunit B [Chlamydophila pneumoniae TW-183]
 gi|4377019|gb|AAD18854.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae CWL029]
 gi|7188970|gb|AAF37926.1| DNA gyrase, subunit B [Chlamydophila pneumoniae AR39]
 gi|8979087|dbj|BAA98922.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138]
 gi|33236584|gb|AAP98672.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183]
          Length = 602

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 167/607 (27%), Positives = 274/607 (45%), Gaps = 55/607 (9%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYADI 63
           ++Y   SI  L  LD ++ R  MYIG     S    G++ +  EV+DN IDE + G+   
Sbjct: 2   AAYTEASILSLASLDHIRLRAGMYIGRLGNGSQKEDGIYTLFKEVVDNGIDEFIMGHGKS 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLH 121
           + ++   D   ++ D GRGIP             +I     ++ G K+ Q  +  S GL+
Sbjct: 62  LKIS-ASDKQISIQDQGRGIPLGK----------LIDCVSKINTGAKYTQDVFHFSVGLN 110

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+  VNALS    +R  R+   +  +F  G+L       GS  +  GT V+F P   I
Sbjct: 111 GVGLKAVNALSEIFSVRSVRKKKYHLATFHRGVLQE--SKQGSTKDPDGTFVSFTPDPSI 168

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    FN+D L+ ++R+ ++L+S ++I   D+              G++          +
Sbjct: 169 FPEFTFNHDFLKDKIRQYTYLHSGLEIRFNDEV--------FISHNGLKDLFDAEIT--E 218

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P + SP+  Q       +       +G  E    F N     DGGTHL+  + A+ + + 
Sbjct: 219 PPLYSPLFFQNED----LTFIFSHLEGNTERYFSFVNGQETLDGGTHLTAFKEAIVKGVN 274

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            +  K         + + +D REG    ++IK+  P F SQTK KL ++++RS +   V 
Sbjct: 275 EFFGK---------TFVSNDIREGIVGCIAIKIASPIFESQTKNKLGNTQIRSSLIKDVK 325

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC---- 417
           + +   L +  +  +++++K+      R   +  +   + K    +     KL DC    
Sbjct: 326 EAIVQALRKDKVAPELLLEKIKFNEKTRKNIQFIKQDLKSKQK-KVHYKIPKLRDCKFHY 384

Query: 418 --SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
                  + S +FL EG+SA  S    R+   QA+  LRGK +NV      KM  + E+ 
Sbjct: 385 NDRSLYGEASSIFLTEGESASASILASRNPLTQAVFSLRGKPMNVFSLEETKMYKNDELF 444

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
            L TALG    +       LRY+K+I+ TDADVDG HIR LL+TFF + +  L+ N  L+
Sbjct: 445 YLATALGITQNEIQH----LRYNKVILATDADVDGMHIRNLLITFFLKTLLPLVENNHLF 500

Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDD 593
           I++ PL+ +    +  Y   E+     L      +           G IS  +   FI  
Sbjct: 501 ILETPLFKVRNKTTTLYYYSEQEKMQALQQFGKKDSSLEITRFKGLGEISPKEFAAFIGP 560

Query: 594 ALKIDKL 600
            +++  +
Sbjct: 561 EIRLTPV 567


>gi|189193341|ref|XP_001933009.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978573|gb|EDU45199.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1722

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 142/706 (20%), Positives = 269/706 (38%), Gaps = 56/706 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +   Q+L  L+ + KRP  YIG  + ++                      GL+ +  E+L
Sbjct: 141 SSKYQMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSESDSMEFRDVTYVPGLYKIFDEIL 200

Query: 50  DNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D          I VT++ + G  ++ ++G+GIP ++HKE GI   E+I   L    
Sbjct: 201 VNAADNKQNDKNMSEIRVTVDRETGEISIKNDGKGIPIEIHKEHGIYVPEMIFGHLLTSS 260

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSA 165
            ++    KV+GG +G G  + N  S+   +     ++   Y  ++   +           
Sbjct: 261 NYDDDQQKVTGGRNGYGAKLCNVFSTEFTVETVDSKQKKKYRQTWTENMSKMGKAKISDI 320

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +D  T+V++      F +   + D    ++ R  +++     V++ L   R        
Sbjct: 321 KSDDYTKVSWKADYARFGMTGIDDDFEAMVKRRTYDMAGTLRGVKVYLNGDRIKLTSFAK 380

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                 +       D+ K    +    I   + +   D+    +DG    V  F N+I  
Sbjct: 381 YME---MYTKSISRDQGKSEDDKEKDVIITDKLD-RWDIGFAVSDGSFNQV-SFVNSIAT 435

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++ +   +  ++ + V K   +      +     +      ++  + +P F+SQ
Sbjct: 436 TSGGTHVNHIADQIVEKLMAIVNKKNKAAVK---LKPAQIKNHLFLFVNCSIVNPAFTSQ 492

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE+L +   +   +  ++D           +  +I   +  A     A +  +     K
Sbjct: 493 TKEQLTTRPSQFGSKPVLSDK----FLNAIAKTDVIQNIMHFAQQ--KADQMMKKTDGNK 546

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKILN 459
                 +          +D     L L EG+SA   A  GR   +++   + PLRGK+LN
Sbjct: 547 RNRISNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLN 606

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFD--INKLRYHKIIIMTDADVDGAHIRTLL 517
           V  A  D+++ + EI  +   +G    ++     +  LRY  ++IMTD D DG+HI+ LL
Sbjct: 607 VRDATVDQIMKNAEIQNIKKFMGLQHKKEYTMADMKSLRYGHLMIMTDQDHDGSHIKGLL 666

Query: 518 LTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           + F   Q PSL+   GFL     P+  + +G      K+  +++ +       E  E   
Sbjct: 667 INFLQCQFPSLLKIPGFLLEFITPIVKVWKGD----PKNPRNMKSFFSMPEYEEWKEQHQ 722

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             KG   K        D        KD   +  +  + +     +      ++   +   
Sbjct: 723 HEKGWDHKYYKGLGTSDIPDAQIYFKDLDTHMKRFQVMREEEEKLIELAFSKKKADARKD 782

Query: 637 KLANRL---NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
            L + +   +      + S+   +N   IL            V++G
Sbjct: 783 WLRDFVPGQHLDLTTPDISYDDFVNKELILFSMADNVRSIPSVIDG 828


>gi|23451187|gb|AAN32698.1| DNA gyrase subunit B [Aeromonas popoffii]
          Length = 372

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 218/374 (58%), Positives = 283/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSIEQDGIGVEVAMQWNDAYQEGVHCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARF KM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFXKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|115291791|gb|ABI93214.1| GyrB [Gordonia sp. D2]
          Length = 429

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 189/432 (43%), Positives = 266/432 (61%), Gaps = 33/432 (7%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT+LHAGGKF+  SY VSGGLHGVG+SVVNALS+ ++L IKR G+++  ++ N     PL
Sbjct: 1   MTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIKRNGSVWRQTYTNAEP-GPL 59

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--- 216
            V G A + TGT V+F     IF   ++N +T+  RL+E++FLN  + I+L D+R     
Sbjct: 60  -VEGEAASGTGTSVSFWADGKIFETTEYNIETIARRLQEMAFLNKGLTITLTDERVHEAV 118

Query: 217 --------------------------EPREITMFYKGGIEAFVSYLDRHKK-PLMQSPIR 249
                                     + +  T  Y  G+  ++ +L+   K P+ ++ + 
Sbjct: 119 LEAEVEESEDGDASIKTEEQKATAIAKVKTRTYHYPDGLIDYIKHLNSRTKAPIHKTVVG 178

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                +   +++AM+WN+GY E+V  F N I   +GGTH  G R+ALT  +  Y      
Sbjct: 179 FTAKGEGHEVEIAMQWNEGYAESVHTFANTINTAEGGTHEEGFRAALTSTVNRYAIDKKL 238

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K+    + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W +
Sbjct: 239 IKEKDGKLSGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLAMWFD 298

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAK I++K  D+   R AARRAR+L RRK   DI  LPGKLADC   DP K E+++
Sbjct: 299 ANPAEAKTIIRKAADSQQARLAARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYI 358

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D 
Sbjct: 359 VEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDE 417

Query: 490 FDINKLRYHKII 501
           FDI+KLRY+KI+
Sbjct: 418 FDISKLRYNKIM 429


>gi|6729162|dbj|BAA89714.1| DNA gyrase subunit B [Dactylosporangium matsuzakiense]
          Length = 391

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 180/393 (45%), Positives = 246/393 (62%), Gaps = 7/393 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +Y VSGGLHGVG+SVVNALS+ + L I ++  ++   + N     PL   G   + TGT 
Sbjct: 3   AYAVSGGLHGVGISVVNALSTRIDLEIHKDDFVWRQRYNNSKP-EPLQK-GEPTDRTGTS 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---PEPREITMFYKGGI 229
           VTF P   IF    F Y+ +  R++E +FLN  + I+L D+R     E RE+   Y+ GI
Sbjct: 61  VTFWPDPTIFETTTFVYEIIYRRIQEYAFLNRGLTIALRDERPDTPEEKREVVFCYENGI 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV +L+  K P+ ++ +      D I++++AM+WN+ Y E+V  F N I   +GGTH 
Sbjct: 121 ADFVRHLNATKTPIHRTVVEFGSEGDGIAVEIAMQWNESYGESVYTFANTINTHEGGTHE 180

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G RSALT  +  Y       K     + G+D REG  +++S+K+ +P+F  QTK KL +
Sbjct: 181 EGFRSALTSVVNKYGADKKFLK-GDEKLTGEDIREGLAAIISVKLANPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +E RS V+   ND L  W + +P E K I+ K   A+  R AA +AR L RRK +L+  S
Sbjct: 240 TEARSFVQKVCNDRLVDWFDRNPAEVKTIITKASQAARARIAATQARKLARRKSLLESGS 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           +PGKLADC   DP+  E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L
Sbjct: 300 MPGKLADCQSNDPRLCEVFIVEGDSAGGSAKQGRDPRVQAILPIRGKILNVEKARIDRVL 359

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            + E+  LITALGTGI  D FDI KLRYHK+I+
Sbjct: 360 KNNEVQALITALGTGI-HDEFDIEKLRYHKLIL 391


>gi|50305715|ref|XP_452818.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641951|emb|CAH01669.1| KLLA0C13838p [Kluyveromyces lactis]
          Length = 1435

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 151/726 (20%), Positives = 266/726 (36%), Gaps = 71/726 (9%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTD---------GES----------- 39
           M+     +  Y     Q +  L+ + KRP  YIG  +          E+           
Sbjct: 1   MTQSKTVSERY-----QKISQLEHILKRPDTYIGSVEVQESQQWIHDETTDCMIEKTVNI 55

Query: 40  --GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISA 95
             GL  +  E+L NA D  +       I V +N  + +  V ++G+GIP ++H +EGI  
Sbjct: 56  VPGLFKIFDEILVNAADNKVRDPSMKKIDVVINQEENTIEVKNDGKGIPVEIHDKEGIYI 115

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+   L       G+ Y  ++ N 
Sbjct: 116 PELIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPSRGHKYIQNWENN 175

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+V F P    F +   + D    ++ R+ +++     V +S
Sbjct: 176 MSTCHPPKITSYKKGPSYTKVIFKPDLQRFGMDKLDDDIVGVMRRRVYDINGSVRDVNVS 235

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ--------GSRDNISIDL 261
           L  K                      L+R ++         +          R N   ++
Sbjct: 236 LNGKALKIRNFKNYVELYLKSLEKIKLNRLRESSTPDEPMQEPTKIPTILYERINDRWEV 295

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A   ++   + +  F N+I    GGTH++ +   + ++++  ++K       K+++    
Sbjct: 296 AFAVSENSFQQI-SFVNSIATTSGGTHVNYVTDQIIKKVSDRLKKQ------KKTIKPFQ 348

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            +      ++  + +P F+SQTKE+L +  V+                     A  I + 
Sbjct: 349 IKNNMFIFINCLIENPAFTSQTKEQLTTR-VKDFGSKCEVPSEFINKIMKTDLATKIFEI 407

Query: 382 VLDAS--MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA---- 435
             + +   ++      ++       L+ A++ G              L L EGDSA    
Sbjct: 408 ADENAHKQLKKTDGSRKNRITEYPKLEDANMAGTKEGYK------CTLVLTEGDSALSLA 461

Query: 436 -GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
             G A  GR        PLRGK+LNV  A  D++  + EI  +   +G    +   D   
Sbjct: 462 VAGLAVVGRD--YYGCFPLRGKMLNVREATPDQISKNAEIQAIKKIMGLQHKKRYEDTTT 519

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYV 553
           LRY  I+IMTD D DG+HI+ L++ F     P L+   GFL     P+  IT  +  +  
Sbjct: 520 LRYGHIMIMTDQDHDGSHIKGLIINFLESSFPGLLDIPGFLIEFITPIIKITISRPKKET 579

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
               ++ DY   +   EE   +   +            +       L K     H     
Sbjct: 580 ISFYNMPDY--EKWREEESHKYTWKQKYYKGLGTSTQQEAREYFSGLDKHLKKFHALQGD 637

Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQE 673
           +  +I   F+ +   +                 + +E      IN   IL          
Sbjct: 638 DSQLIDLAFSKKKADDR-KEWLKLYEPGTVLDPKLTEIPISDFINKELILFSLADNIRSI 696

Query: 674 QFVLEG 679
             VL+G
Sbjct: 697 PSVLDG 702


>gi|86169559|gb|ABC87019.1| DNA gyrase subunit B [Leuconostoc citreum]
          Length = 393

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 183/394 (46%), Positives = 262/394 (66%), Gaps = 3/394 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-T 169
              YKVSGGLHGVG SVVNALS+ L +++ R+G +Y M F  G ++  +V          
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTNLDVKVVRDGQVYYMDFKVGRVNTRMVKLDEKPTIAR 60

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F P +DIF     FNY+TL  R+REL+FLN  ++IS+ D R+  P   +  Y+GG
Sbjct: 61  GTIVHFKPDADIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRAETPMTESFHYEGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ +V YL+  K  +   P+ ++G  + I ++ A+++     +++  FTNNI   +GGTH
Sbjct: 121 IKEYVKYLNAEKVVVFPEPVYVEGEENGIVVEAALQYTTDVKDSLRTFTNNINTYEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ALTR I  Y  K+   K++  S+ G+D REG T+++SIK PDP+F  QTK KL 
Sbjct: 181 ETGFKTALTRVINDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +S+ R   +   ++  S ++ E+P  AK IV+K + A   R AA+RAR++TR++  L+I 
Sbjct: 241 NSDARQATDRMFSETFSRFMMENPAVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIG 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLAD +  DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNVE+A  DK+
Sbjct: 301 NLPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVEKATLDKV 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L+++EI +L TA+GTG G D F++ K  YHK+II
Sbjct: 361 LANEEIRSLFTAMGTGFG-DDFNVEKANYHKVII 393


>gi|86169569|gb|ABC87024.1| DNA gyrase subunit B [Fructobacillus fructosus KCTC 3544]
          Length = 393

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 188/394 (47%), Positives = 261/394 (66%), Gaps = 3/394 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDT 169
              YKVSGGLHGVG SVVNALS+ L +++ R+G +Y M F  G +   +    G    + 
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTSLDVQVVRDGQLYYMDFQTGRVKTGMTKKSGPLPIER 60

Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F P  DIF     FNY TL  R+REL+FLN  ++IS+ D R  EP   +  ++GG
Sbjct: 61  GTIVHFKPDPDIFQETTIFNYQTLLSRVRELAFLNKGLRISITDNRPDEPVSESFHFEGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ +VSYLD  K+ L   P+ ++G  + I +++A+++     EN+  FTNNI   +GGTH
Sbjct: 121 IKEYVSYLDEGKQVLFDQPVYVEGEENGIVVEVALQYTTEIKENLKTFTNNINTYEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ALTR I  Y  K    K++  S+ G+D REG T+++SIK PDP F  QTK KL 
Sbjct: 181 ETGFKTALTRVINDYARKQKMIKENGESLTGEDVREGMTAIVSIKHPDPPFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +S+ R  V+   +   S ++ E+P  AK IV+K   A   R +A+RAR++TRR+  L+I+
Sbjct: 241 NSDARQAVDRMFSGTFSRFMLENPTVAKQIVEKGTLAQKARLSAKRAREMTRRQSGLEIS 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLAD + +DP+ SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNV +A  D++
Sbjct: 301 NLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVGKASLDRV 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L+++EI +L TALG G G D F++ K  YHKIII
Sbjct: 361 LANEEIRSLFTALGAGFG-DDFNVGKANYHKIII 393


>gi|211927069|dbj|BAG82787.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 420

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 180/422 (42%), Positives = 254/422 (60%), Gaps = 32/422 (7%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +Y VSGGLHGVGVSVVNALS+ L++ I  +G  +   +   +    L   G     T
Sbjct: 2   DDSAYAVSGGLHGVGVSVVNALSTRLEVEIATDGYEWFQHYDRSVP-GTLKQ-GEKTKKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------- 214
           GT V F    DIF   D++++T+  RL+E++FLN  + I+L D+R               
Sbjct: 60  GTTVRFWADPDIFETTDYDFETVARRLQEMAFLNKGLTINLTDERVRNEEVVDEVVSDTA 119

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                         + + +  T  Y GG+  FV +++R K P+  S +   G      ++
Sbjct: 120 DAPKSAREEAEERTTQKVKHRTFHYPGGLVDFVKHINRTKNPIHSSIVDFSGKGPGHEVE 179

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GD
Sbjct: 180 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDRKLLKDKDPNLTGD 239

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK +V 
Sbjct: 240 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSDAKTVVN 299

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 300 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 359

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI
Sbjct: 360 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKI 418

Query: 501 II 502
           ++
Sbjct: 419 VL 420


>gi|51571549|emb|CAH18941.1| gyrase B [Corallococcus coralloides]
          Length = 371

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 198/374 (52%), Positives = 266/374 (71%), Gaps = 3/374 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+R++R G +YE S+  G+ +      G+     GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVANGAPQEAGTTDKV-GT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  TIHFKPDSTVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACCARIAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTGI 485
            EI TLITALGTGI
Sbjct: 358 AEIVTLITALGTGI 371


>gi|195119011|ref|XP_002004025.1| GI19824 [Drosophila mojavensis]
 gi|193914600|gb|EDW13467.1| GI19824 [Drosophila mojavensis]
          Length = 1431

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 135/739 (18%), Positives = 261/739 (35%), Gaps = 65/739 (8%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 14  YQKKSQLEHILLRPDSYIGSVEFTKELMWVHDAEKNRMVQREISFVPGLYKIFDEILVNA 73

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I V ++ +    ++ +NG+GIP  +HKEE +    +I   L     +N
Sbjct: 74  ADNKQRDKSMNTIKVDIDPERNIVSIWNNGQGIPVTMHKEENMYVPTMIFGHLLTSSNYN 133

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLR--IKREGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   +    K+    ++ ++ N +      +       
Sbjct: 134 DDEKKVTGGRNGYGAKLCNIFSNSFTVETATKQYKKSFKQTWGNNMSKAGDPIIKDFNGS 193

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
             T +TF P    F ++  + D +    R          I+   K        T     G
Sbjct: 194 DYTRITFSPDLSKFKMESLDSDIVALMSRRAYD------IAASTKGVSVFLNGTKVPVRG 247

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            + ++    ++       PI++         ++A   +D   + V  F N+I    GG H
Sbjct: 248 FKEYIDLFVKNTDDDAGQPIKVVYEACGERWEVACCPSDRGFQQV-SFVNSIATTKGGRH 306

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           +  +   + +Q+   ++K   +     S+     R      ++  + +P F SQTKE + 
Sbjct: 307 VDHVVDNVIKQLIEVLKKKNKNG---ISIKPFQVRNHLWIFVNCLIENPTFDSQTKENMT 363

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
                   +   ++   A + +       IV+ VL  +  +     A+   ++   +   
Sbjct: 364 LQAKSFGSKCTFSEKFIANVAKAG-----IVESVLAWAKFKAQNDIAKTGGKKSHKIKGI 418

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVERARF 465
                  +   ++     L L EGDSA   A  G     R    + PLRGK+LNV  A F
Sbjct: 419 PKLEDANEAGTKNSINCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNVREATF 478

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLTFFF 522
            ++  + EI  L   +G    +    ++    LRY K++IMTD D DG+HI+ LL+ F  
Sbjct: 479 KQLTENAEINNLCKIIGLQYKKKYLTMDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIH 538

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
              P L+   FL     P+   T+             E++ ++        +        
Sbjct: 539 TNWPELLRLPFLEEFITPIVKATKKNEEISFYSLPEFEEWKMDTPNHHTYNIKYYKGLGT 598

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           S          + +  +  +D   +      +  V          ++   S  + L N +
Sbjct: 599 S---------TSKEAKEYFQDMERHRILFKYDGQVDDDNIVMAFAKKHVESRKTWLTNHM 649

Query: 643 NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
           + +  + +            L  +  + V     +    +    +  +R   + ++    
Sbjct: 650 DEVKRRKQLGL-----PERYLYTKGTKHVSYSDFINLELVLFSNADNERSIPSLVDGLKP 704

Query: 703 TILSLI----CNGDKIKIT 717
               ++       DK ++ 
Sbjct: 705 GQRKVMFTCFKRNDKREVK 723


>gi|41052970|dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
          Length = 1525

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 136/691 (19%), Positives = 251/691 (36%), Gaps = 63/691 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            +  Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 29  EEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVYEDGAMVSRSVTYVPGLYKIFDEILVN 88

Query: 52  AIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + V ++ D G  +V +NG GIP ++H+EEG+   E+I   L  
Sbjct: 89  AADNKQRDPSM----DSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPEMIFGHLLT 144

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVT 162
              ++    K +GG +G G  + N  S+   +     R    Y+  F   +   +   +T
Sbjct: 145 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSENMGKKSEPQIT 204

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                +  T VTF P    F++     D +    + +  +  ++  ++  +   +   + 
Sbjct: 205 KCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRKRVVDMAGTLGKTVKVELDHQKVPVH 264

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             +   ++ ++    + +  + + P   Q   D   + +++          + F N I  
Sbjct: 265 -SFSDYVKLYIKSASKDRDDVNELPSISQKVNDRWEVCVSLSEG---QFQQVSFVNRIAT 320

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH+  + + +   + + V K   +   K        +      ++  + +P F SQ
Sbjct: 321 IKGGTHVDYVTNQIATHVMNIVNKRNKNAHMKAHN----VKSHLWVFVNALIDNPAFDSQ 376

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L + +      SF +    +      + +  IV  +L  +  + +    +    ++
Sbjct: 377 TKETLTTRQA-----SFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKELQKTDGSKR 431

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             L              +D     L L EGDSA   A  G S   R+   + PLRGK+LN
Sbjct: 432 SRLTGIPKLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFPLRGKLLN 491

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A   +++ + EI  +   LG   G+       LRY  ++IMTD D DG+HI+ LL+ 
Sbjct: 492 VREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQDHDGSHIKGLLIN 551

Query: 520 FFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           F     PSLI      +    P+   T  +  + V    S+ +Y                
Sbjct: 552 FIHSFWPSLIKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPEYEQW------------- 598

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           K  +  N     I     +          + +   +        N + D +I ++ + K 
Sbjct: 599 KESLGGNASGWSIKYYKGLGTSTSSEGRQYFQDIAKHKKDFVWKNDQDDNDIELAFSKKR 658

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
                      +   H       I       
Sbjct: 659 ITDRKEWLTNFQSGTHLDTEGKYIKYSDFIN 689


>gi|56807931|ref|ZP_00365753.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Streptococcus pyogenes M49 591]
          Length = 524

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 199/523 (38%), Positives = 301/523 (57%), Gaps = 16/523 (3%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSV 184
           VVNALS+WL++ I R+G++Y   F NG      L   G+A    +GT VTF+P   IFS 
Sbjct: 1   VVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST 60

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            DF ++T+  RL+E +FL  +V++SL D R  +P      Y+ G++ FV YL+  K+ L 
Sbjct: 61  IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT 120

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I ++G   +  +++A+++NDG+ +N+L F NN+  KDGG+H +GL+SA+T+ +  Y 
Sbjct: 121 P-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 179

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362
            K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R +VES V++
Sbjct: 180 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 239

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLADCSER 420
            L+ +L E+   A  +V+K + A   R+AAR+ARD +R             GKL     +
Sbjct: 240 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 299

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           + KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+   +L ++EI T++  
Sbjct: 300 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 359

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G+G D F++  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PP
Sbjct: 360 IGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPP 418

Query: 541 LYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI---DD 593
           LY ++    + + + Y   +  LED          I       G ++ N L       + 
Sbjct: 419 LYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTMDPET 477

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              I   I D      +  +     +       +  +  +L  
Sbjct: 478 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 520



 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%)

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            + + +    +  ++               + +    S  +          ++   ++  
Sbjct: 253 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 312

Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657
                    +    QA++     V N E  +  ++    ++   +  I       ++   
Sbjct: 313 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 372

Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712
            N D ++           +   + + +F  +Y R           L  L  +  G    +
Sbjct: 373 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 430

Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           KI        L+ +     KG  +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++
Sbjct: 431 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 490

Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795
           A+   S LMGD+  PRR++I++N
Sbjct: 491 AERRVSVLMGDKAAPRRQWIEDN 513


>gi|190341292|gb|ACE74723.1| DNA gyrase subunit B [Bacillus circulans]
          Length = 396

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 184/382 (48%), Positives = 266/382 (69%), Gaps = 3/382 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS+ L++ + R+GNIY   +  G+    L + G       T   F P  
Sbjct: 17  LHGVGASVVNALSTELEVFVHRDGNIYYQKYQKGVPAADLEIIGETDTTG-TTTHFKPDG 75

Query: 180 DIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF    +++Y+TL +R+REL+FLN  ++I++ DKR    +     Y+GGI+++V +L+R
Sbjct: 76  EIFKETLEYDYETLANRVRELAFLNRDIRITIEDKREGMEKRKEYQYEGGIKSYVEHLNR 135

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+ L + PI I+G +D I+++++ ++NDGY  N+  F NNI   +GG+H SG ++ALTR
Sbjct: 136 NKEVLFEEPIYIEGEKDGITVEISFQYNDGYTGNIHSFANNINTHEGGSHESGFKTALTR 195

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K+   ++   ++ G+D REG  +++S+K PDP+F  QTK KL +SEVR++ ++
Sbjct: 196 VINDYARKNSLLRESDTNLSGEDVREGLVAIVSVKHPDPQFEGQTKTKLGNSEVRTITDT 255

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P  A+ IV K   A   R AA++AR+LTRRK  L+++SLPGKLADCS
Sbjct: 256 VFSEHHEKFLLENPTVARKIVDKGQMALRARIAAKKARELTRRKSALEVSSLPGKLADCS 315

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            RDPK SELF+VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++LS+ E+ ++I
Sbjct: 316 SRDPKISELFIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILSNNEVRSMI 375

Query: 479 TALGTGIGQDSFDINKLRYHKI 500
           TA+GTGIG D +DI+K RYHKI
Sbjct: 376 TAIGTGIG-DDYDISKARYHKI 396


>gi|302202600|gb|ADL09409.1| DNA topoisomerase II [Omphalotus nidiformis]
          Length = 1557

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 142/688 (20%), Positives = 269/688 (39%), Gaps = 51/688 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           ++  Q L  L+ + KRP  YIG  +  +                      G   ++ E+L
Sbjct: 119 SEMYQKLSQLEHILKRPDSYIGSVETITQAMWTYDADTKRMVHREVKYVPGFFKIVDEIL 178

Query: 50  DNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +     D + V ++  + + +V +NG+GIP ++H +E +   E+I   L +  
Sbjct: 179 VNAADNKINDPSMDTLKVNIDIEENTISVYNNGKGIPIEIHSQEKMYIPELIFGHLLSSS 238

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFINGILD-NPLVVTGS 164
            ++    K++GG +G G    N  S    +    +     Y+ ++ + +       +T +
Sbjct: 239 NYDDDEKKLTGGRNGYGAKHANIYSHEFTVETADKNTQQKYKQTWTDNMSKCGKPKITKN 298

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           A  +  T VTF P    F +   + DT   L+ R+ +++     V++ L D+R       
Sbjct: 299 ARGEEWTRVTFRPDLKRFGMDRIDEDTAGLLRKRVFDMAGTVKDVKVLLNDERLKIKNFR 358

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                    A     +         P  I   + N   ++A   ++G   +V  F N+I 
Sbjct: 359 QYVELYLHSASAEAAEHSGGAAQPKP-SIIYEQVNARWEIAFAVSEGNFMHV-SFANSIA 416

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   + + + + + K       K        R      ++  + +P F S
Sbjct: 417 TVKGGTHVNLIADQIAKNLITSIGKKNKGAAVKAGQ----IRNHMWIFINSLIENPTFDS 472

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE L     +   +  V++     +++ P     IV+ +L+ +  +   +  +    +
Sbjct: 473 QTKETLTLPASKFGTKPVVSEDFMKKVQKSP-----IVENILNWAKFKADQQIKKTDGSK 527

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKIL 458
           +  L          +   +  +   L L EGDSA   A  G     R N  + PLRGK+L
Sbjct: 528 RSRLTGLPKLADANNAGTKTARDCTLILTEGDSAKSLAVAGLGVVGRNNFGVFPLRGKLL 587

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           +V  AR D+++ ++EI  +   +G    +D  +++ LRY +++IMTD D DG+HI+ LL+
Sbjct: 588 SVREARHDQIMKNEEIQNIKKIMGLQHNKDYNNVSSLRYGRLMIMTDQDHDGSHIKGLLI 647

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            F     PSL+      +    P+  +T+G   +        E +L     +++      
Sbjct: 648 NFLDHFYPSLLKVPDFLVEFVTPIIRVTKGNQRKDFFTIPEYEQWLETTPGADK-----W 702

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           S             D       + K   P       ++ +I   F+ +   E       +
Sbjct: 703 STKYFKGLGTSTDADARGYFSNMAKHMIPFAPTQEGDRELIELAFSKKKADER-KEWLRQ 761

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVK 665
                       E  +   +N   IL  
Sbjct: 762 FKPGTFLGHRLDEIPYSEFVNKELILFS 789


>gi|18147173|dbj|BAB83067.1| DNA gyrase subunit B [Alcanivorax sp. OM-1]
          Length = 379

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 229/379 (60%), Positives = 290/379 (76%), Gaps = 4/379 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G   + +GT V F PS
Sbjct: 1   GLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSSGTAVHFRPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + FS   F+YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+ AFVSYL+ 
Sbjct: 60  PETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGLSAFVSYLNT 117

Query: 239 HKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K PL Q      +   D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL+G R+ALT
Sbjct: 118 NKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRAALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY++K    KK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 178 RTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             + D    +L E+P EA+ IV+K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC
Sbjct: 238 QTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            ++DP  SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTL
Sbjct: 298 QQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTL 357

Query: 478 ITALGTGIGQDSFDINKLR 496
           ITALG GIG+D ++I KLR
Sbjct: 358 ITALGCGIGRDEYNIEKLR 376


>gi|25006389|dbj|BAC24014.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1091

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 141/685 (20%), Positives = 248/685 (36%), Gaps = 49/685 (7%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDN 51
             Q +  L+ + KRP  YIG  +                         GL+ +  E+L N
Sbjct: 1   QYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVN 60

Query: 52  AIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D          I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +
Sbjct: 61  AADNKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEHIYIPELIFGHLLTSSNY 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAGN 167
           N    KV+GG +G G  + N  S+   +          +++++   +          +  
Sbjct: 121 NDMQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKKFKLTWTKNMSTMGKAKITESKG 180

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           D  T+VTF P    F +   + D    ++ R+ +++       + L   R P        
Sbjct: 181 DDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCG-TTVKLNGTRIPVKSFKKYM 239

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
                    +      +        I     +   ++    +DG  + V  F N+I    
Sbjct: 240 EMYTK----AIKTERGEDPTSDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTS 294

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++ +   +        +      K   ++     +      ++ ++ +P F+SQTK
Sbjct: 295 GGTHVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTK 351

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L +   +   +  V+D     + +  +   I+      A  +       R        
Sbjct: 352 EQLTTRSSQFGSKCIVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPK 411

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVE 461
           L  A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV 
Sbjct: 412 LTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVR 465

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            A  D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ + 
Sbjct: 466 DASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYL 525

Query: 522 FRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
               P+L+   GFL     P+  + +G        +         +            K 
Sbjct: 526 QVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKK 585

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
                   +  D  +    L +     H     E  +I   F+ +   E       +   
Sbjct: 586 YYKGLGTSSTEDAQVYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKP 644

Query: 641 RLNFIAEKSEKSWHGSINNSDILVK 665
                    + ++   IN   IL  
Sbjct: 645 GTYLDHSMDQITYTDFINKELILFS 669


>gi|163256305|dbj|BAF95663.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3C]
          Length = 273

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 160/275 (58%), Positives = 199/275 (72%), Gaps = 2/275 (0%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGK
Sbjct: 1   VDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGK 60

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A   
Sbjct: 61  FDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGR 120

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG
Sbjct: 121 RGTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGG 180

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTH
Sbjct: 181 VEEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTH 240

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           L+G R ALTRQ+  Y E +  +KK+K ++ GDDCR
Sbjct: 241 LAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCR 273


>gi|308152495|dbj|BAJ22226.1| DNA gyrase subunit B [Mycobacterium thermoresistibile]
          Length = 418

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 186/421 (44%), Positives = 253/421 (60%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVGVSVVNALS+ +++ I R+G  +  ++   +    L   G     TG
Sbjct: 1   SDAYAVSGGLHGVGVSVVNALSTRMEVEICRDGYQWFQTYDKSVP-GTLKQ-GEKTRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T V F P  D+F    F+++T+  RL+E +FLN  + I LID+                 
Sbjct: 59  TVVRFWPDPDVFETTTFDFETVARRLQEQAFLNKGLTIELIDERVTAEEVVDEVVSDVAE 118

Query: 214 ------------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                        + + +  T +Y GG+  FV +++R K P+  S I   G      +++
Sbjct: 119 APKSAEEEAAAANTQKVKHRTFYYPGGLVDFVKHINRTKSPIHPSIIDFSGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD
Sbjct: 179 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P EAKIIV K
Sbjct: 239 IREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKTCNEQLSHWFEANPAEAKIIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP  SEL++VEGDSAGGSAK 
Sbjct: 299 AISSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTVSELYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKII
Sbjct: 359 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKII 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|197295752|gb|ACH58587.1| gyrase subunit B [Methylobacterium adhaesivum]
          Length = 376

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 227/376 (60%), Positives = 291/376 (77%), Gaps = 2/376 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS WL+LRI R G  + M F +G   +PLVV G      GTEV
Sbjct: 1   YKVSGGLHGVGVSVVNALSQWLRLRIWRGGMEHAMEFRHGDAVSPLVVVGEGNGRRGTEV 60

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           +FL S++ F+  +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y+GG+EAFV
Sbjct: 61  SFLASTETFTSIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELYYEGGVEAFV 120

Query: 234 SYLDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            YLDR +KP+  M  PI ++  RD I +++A  WND ++E VL FTNNIPQ++GGTHL+G
Sbjct: 121 RYLDRSRKPIDGMAKPIMVRSERDGIRVEVAFWWNDSFNETVLPFTNNIPQREGGTHLAG 180

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTRQ+T Y E S  +K++K ++ G+DCREG T+V+S+++P+P FSSQTK+KLV++ 
Sbjct: 181 FRAALTRQVTGYAESSGIAKREKVTLTGEDCREGLTAVISVQVPEPSFSSQTKDKLVTAA 240

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR  VE+ +N+GLS WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKGVLDIASLP
Sbjct: 241 VRPAVENVLNEGLSNWLEENPTQAKSVMGKVILAASAREAARKARETVTRKGVLDIASLP 300

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS
Sbjct: 301 GKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSS 360

Query: 472 QEIGTLITALGTGIGQ 487
            +IGTLITALG GIG+
Sbjct: 361 DQIGTLITALGAGIGR 376


>gi|62085680|gb|AAX63232.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247]
          Length = 425

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 189/428 (44%), Positives = 256/428 (59%), Gaps = 35/428 (8%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I   G  +E ++ +     PL   G A
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQTYDHAKPQ-PLEK-GDA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------- 214
              TGT V F P  +IF    F+ +T+  RL+E++FLN  + I+L DKR           
Sbjct: 59  TRKTGTLVRFWPDPEIFETTVFSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDA 118

Query: 215 ---------------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
                                  +P+  T  Y  G+  ++ +L+R K+P+  S I     
Sbjct: 119 NGDESVADAAETVKTEEEKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVIGFTAK 178

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+ 
Sbjct: 179 GTGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEK 238

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L+ W E +P 
Sbjct: 239 DGKLTGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPA 298

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EAKII+KK +D+S  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGD
Sbjct: 299 EAKIIIKKAVDSSQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGD 358

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI 
Sbjct: 359 SAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIA 417

Query: 494 KLRYHKII 501
           KLRYHKI+
Sbjct: 418 KLRYHKIV 425


>gi|66474541|gb|AAY46840.1| GyrB [Aeromonas veronii]
          Length = 371

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+P+P+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPEPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|86211171|gb|ABC71059.2| DNA gyrase subunit beta [Pseudomonas qianpuensis]
          Length = 368

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 213/371 (57%), Positives = 280/371 (75%), Gaps = 3/371 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L + I+R G ++E ++ +G+   PL   G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEELVMTIRRGGKVWEQTYHHGVPQAPLEAIGET-DSTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F+   F++D L  RLRELSFLNS V I LID+R+ +       Y+GG+ AF
Sbjct: 60  IHFKPSAETFTSITFSWDILAKRLRELSFLNSGVGIHLIDERTGKR--ELFRYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K  +           D I ++++M+WND ++E++LCFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNVNKTTINSVFHFNVQRDDGIGVEVSMQWNDSFNESLLCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           RSALTR + SY+++    KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RSALTRSLNSYIDQEGLLKKMKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +N   S +L E P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPG
Sbjct: 238 KTAVEQEMNKFFSDYLLEKPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFD+MLSSQ
Sbjct: 298 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDRMLSSQ 357

Query: 473 EIGTLITALGT 483
           E+GTLITALG 
Sbjct: 358 EVGTLITALGC 368


>gi|116874218|gb|ABK30798.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 365

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 217/368 (58%), Positives = 283/368 (76%), Gaps = 4/368 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWP 59

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S D F +  +F +D L  RLRELSFLNS V I L+DKR+    E    YKGGI+AFV +L
Sbjct: 60  SMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYKGGIKAFVEFL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+
Sbjct: 118 NKNKTPIHPNVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 238 ETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTG 484
           LITALG G
Sbjct: 358 LITALGCG 365


>gi|308153134|dbj|BAJ22156.1| DNA gyrase subunit B [Pseudonocardia thermophila]
          Length = 403

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 180/406 (44%), Positives = 257/406 (63%), Gaps = 18/406 (4%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SY VSGGLHGVGVSVVNALS+ L++ I  +G  +E +++  +    L   G     TGT
Sbjct: 1   DSYAVSGGLHGVGVSVVNALSTRLEVEIDTDGYHWEQTYVRAVP-GELKR-GEPTTRTGT 58

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------------- 216
            +TF    +IF    +N +T++ RL+E++FLN  + + L D+R+                
Sbjct: 59  SITFWADPEIFETTTYNVETVRRRLQEMAFLNKGLTMILRDERNGDDGEAEEPDAEGYVA 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           + +E    Y  G+E FV++L++ K+P+ +  I         S+++AM+WN GY E+V  F
Sbjct: 119 KVKEYKFHYPNGLEDFVAHLNKSKEPIHKKLIAYSAEEPGHSLEVAMQWNSGYTESVYTF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G R+ALT  +  Y  +    K    ++ GDD REG  +++S+K+ +
Sbjct: 179 ANTINTHEGGTHEEGFRAALTSTVNRYAREKKLLKDKDPALSGDDIREGLAAIVSVKLKE 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL ++EV+S V+   N+ L+ WLE +P EAKIIV K + ++  R AAR+AR
Sbjct: 239 PQFEGQTKTKLGNTEVKSFVQRVSNEWLADWLERNPTEAKIIVNKAIQSAQARIAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +L RRK   DI  LPGKLADC   DP K EL++VEGDSAGGSAK GR    QAILP+RGK
Sbjct: 299 ELVRRKAPGDIGGLPGKLADCRSTDPSKCELYIVEGDSAGGSAKSGRDSMFQAILPIRGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           I+NVE+AR D++L + E+ ++ITALGTGI  D FDI KL+YHK+++
Sbjct: 359 IINVEKARIDRVLRNAEVQSIITALGTGI-HDEFDITKLKYHKVVL 403


>gi|316974528|gb|EFV58014.1| DNA topoisomerase 2-alpha [Trichinella spiralis]
          Length = 1357

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 133/751 (17%), Positives = 271/751 (36%), Gaps = 82/751 (10%)

Query: 13  DSI-QILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +SI Q    L+ +  RP  YIG  +  +                      GL+ +  E++
Sbjct: 50  ESIYQKKSQLEHILIRPDTYIGSIEPHTENMWVFDEEQQKMVIRELTYVPGLYKIYDEIV 109

Query: 50  DNAIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103
            NA D      S+    + I +++N       V +NG+GIP   HKEE +   E+I   L
Sbjct: 110 VNAADNKQRDPSM----NCIKISINATKNEIMVWNNGKGIPVVEHKEEKMYVPEMIFGTL 165

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVV 161
                ++    KV+GG +G G  + N  S    +    RE    ++  +   +      V
Sbjct: 166 LTSSNYDDTERKVTGGRNGYGAKLCNIFSKRFVVETSCREYKKHFKQVWTKNMTATEKPV 225

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEP 218
                +   T V F+P  D F ++  + D    +  R  +++     V++ L  KR P  
Sbjct: 226 ISDCVDQDFTCVRFIPDLDKFGMEKLDDDIVALMCRRAYDIAGSTKGVKVFLNGKRIPVL 285

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G + +V    + +      P+++   + +   ++A+  +D   + V  FTN
Sbjct: 286 ---------GFKEYVDLYLKDRTTDTGEPLKVVYEQPHPRWEVAVAVSDRGFQQV-SFTN 335

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           +I    GG H+  +   +  ++   V+K         +V     +      ++  + +P 
Sbjct: 336 SIATTKGGRHVDYVCDGIVEKVIENVKKQTKKTG--MNVRPFQVKNHLWLFINCLIENPT 393

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F SQTKE +         +  ++D   + + +  +  + ++  +   +  +      +  
Sbjct: 394 FDSQTKENMTLQPKSFGSKCTLSDKFFSQVLKCGV-LESVLSWLQYKAQAQL---DKKCH 449

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPL 453
           + +   L          +   ++  +  L L EGDSA      G +  GR      + PL
Sbjct: 450 STKHSKLKGVPKLEDANEAGTKNSHRCTLILTEGDSAKSLAVAGFSVVGRD--FYGVFPL 507

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF---DINKLRYHKIIIMTDADVDG 510
           +GK+LNV  A + +++ + EI  LI  +G            +N LRY +++IM D D DG
Sbjct: 508 KGKVLNVREANYKQIMENAEINNLIKIIGLQYKCKYDTSEQMNSLRYGRVMIMADQDQDG 567

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           +HI+ L++ FF    P+L+   F+     P+   T+G+             +        
Sbjct: 568 SHIKGLVINFFHHNWPNLLRRNFIEEFITPIVKATKGREELQFFSIPQYFQWRAE----- 622

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
                                  A +  +   +   +      E             ++ 
Sbjct: 623 TANWKAWKVKYYKG----LGTSTAKEAKEYFTNMDRHRIVFKYEGPTDDDAIELAFSKKR 678

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690
                + L + +    +  E +        + L +   + +  +  ++   I       +
Sbjct: 679 VEDRKNWLGDWMLHKKQIQEANL-----PEEYLYQEDTKEISYKSFIDKELILFSNMDNE 733

Query: 691 RIFSNRIEENYLTILSLI----CNGDKIKIT 717
           R   + ++        ++       DK ++ 
Sbjct: 734 RSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 764


>gi|188076212|gb|ACD47156.1| DNA gyrase subunit B [Alcanivorax hongdengensis]
          Length = 371

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 218/373 (58%), Positives = 282/373 (75%), Gaps = 4/373 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  LKL I+R G ++E  + +G+   PL V G   + +GT V F PS++ 
Sbjct: 2   GVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLAVVG-TTDSSGTAVHFRPSAET 60

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   F+YD L  RLRELSFLNS V+I L D+RS E       Y+GG+ AFVS+L+ +K 
Sbjct: 61  FSNIKFHYDILAKRLRELSFLNSGVRIHLKDERSGEE--DVFEYEGGLAAFVSFLNENKT 118

Query: 242 PLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           PL Q      +   D I +++AM+WND Y EN+ CFTNNIPQ+DGGTHL+G R+ALTR +
Sbjct: 119 PLNQVFHFQFEREEDGIGVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRAALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K    KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+  VE  +
Sbjct: 179 NNYMDKEGLLKKEKANPTGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKGAVEQTM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            +    +L E+P EA+ I +K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC ++
Sbjct: 239 GELFQDYLLENPAEARSITQKIIDAARPRDAARKAREMTRRKGALDIAGLPGKLADCQQK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP +SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 299 DPAQSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 358

Query: 481 LGTGIGQDSFDIN 493
           LG GIG+D +D+ 
Sbjct: 359 LGCGIGRDEYDVE 371


>gi|146414654|ref|XP_001483297.1| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1400

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 150/719 (20%), Positives = 254/719 (35%), Gaps = 70/719 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEVL 49
           +D  Q L  L+ + KRP  YIG  +                         GL+ +  E+L
Sbjct: 56  SDQYQKLSQLEHILKRPDTYIGSVEKTGVEMWSFDAATESMIYKEVHIVPGLYKIFDEIL 115

Query: 50  DNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I V ++  + +  V ++G+GIP ++HK+E I   E+I   L    
Sbjct: 116 VNAADNKIRDPSMRNIKVNIDAENNTILVMNDGKGIPIEIHKKEKIYIPELIFGNLLTSS 175

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL-DNPLVVTGS 164
            ++    KV+GG +G G  + N  S+   L         +Y+ ++ N +       +T  
Sbjct: 176 NYDDDEKKVTGGRNGYGAKLCNIFSTEFVLETADLNTSQVYKQTWTNNMANLTKPKITKL 235

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
                 T+VTF P    F ++  + D    L+ R+ +L        I L DK+       
Sbjct: 236 KSKKEYTKVTFKPDLSKFHMEMLDDDILSVLRRRVYDLCGTVKDCNIYLNDKKLSIRNFK 295

Query: 222 TM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
           +            S      +   ++   I     N   ++A   +DG    V  F N+I
Sbjct: 296 SYVEMYVNAIRERSPDPVAPEGETRNYSTIVHEVFNDRWEVAFAVSDGSFNQV-SFVNSI 354

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
               GGTH+  +   +  ++           K K ++   + R      ++  + +P F+
Sbjct: 355 ATTSGGTHVKYVSDQIITKLID-ALTKKEKGKKKLNIKPQEVRNNMFVFINCLIENPAFT 413

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDASMVRDAARRAR 396
           SQTKE+L +      V  F    L   +      AK     I  K+       +     +
Sbjct: 414 SQTKEQLTTR-----VAQFGGKPLEKIVISDQFIAKILKTSIADKIRTIVNANEDKEMLK 468

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG-----GSAKQGRSRENQAIL 451
               RK  +              ++  K  L L EGDSA      G    GR        
Sbjct: 469 ADGSRKSRIKNQVKLVDANKAGTKEGYKCTLILTEGDSAMPLAVAGLTVVGRD--YYGCF 526

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADVD 509
           PLRGK+LNV  A  +++  + EI ++   +G    +     +I  LRY  I+IMTD D D
Sbjct: 527 PLRGKLLNVREASIEQVSKNAEINSIKQIMGLQHKKRYTPENIKSLRYGHIMIMTDQDQD 586

Query: 510 GAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGK----SLQYVKDEESLEDYL- 563
           G+HI+ L++ F     P L+   GFL     P+  +T        +    +    E +  
Sbjct: 587 GSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVKVTITGRGNHRVIPFYNMPEFEKWRE 646

Query: 564 ---INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
                     +      +       +    +D  +K    ++D    +            
Sbjct: 647 TEGTTCKWKHKYFKGLGTSLESEGREYFAALDRHMKSFHALQDGDSQYIDM--------- 697

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
            F+ +   E             +   +  E      IN   IL            +L+G
Sbjct: 698 AFSKKKADER-KDWLQAFRPGTHLDPQIREIPISEFINKELILFSMADNVRSIPSILDG 755


>gi|324331798|gb|ADY38685.1| DNA gyrase subunit B [Ignatzschineria sp. NML 96-0243]
          Length = 372

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 216/375 (57%), Positives = 277/375 (73%), Gaps = 3/375 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS LKL I + G I+E  +  G  D PL   G   +  GT V F PS D+
Sbjct: 1   GVGVSVVNALSSKLKLTIYKHGKIHEQEYTVGEPDYPLREIGET-DKNGTTVYFKPSKDV 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  DF +D L  RLREL+FLNS ++I L D+R+   RE    Y+GGI+A+V  +++++ 
Sbjct: 60  FTDIDFEFDILFKRLRELAFLNSGIRIVLKDERTD--REEIFEYEGGIKAYVELINKNRN 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            +          RDNI++++A +W DGY E+V C+TNNIPQ DGGTHL+G R+A+TR + 
Sbjct: 118 EIHPDIFYCDCQRDNINVEIAFQWTDGYQESVFCYTNNIPQSDGGTHLAGFRAAMTRTLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y++     KK K +  GDD REG T+++S+K+P P+FSSQTKEKLVSSEVR VV+S + 
Sbjct: 178 RYMQDEGLLKKVKVATTGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPVVDSVLA 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  +L EHP +AK I  K++DA+M R+AAR+AR+ TRRK  LDIA LPGKLADC E+D
Sbjct: 238 ERLEQFLLEHPDDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P +SELF+VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFD+M+SS EIGTLITAL
Sbjct: 298 PAQSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMISSAEIGTLITAL 357

Query: 482 GTGIGQDSFDINKLR 496
           G GIG+D FD +KLR
Sbjct: 358 GCGIGRDEFDPDKLR 372


>gi|19912111|dbj|BAB88367.1| DNA gyrase subunit B [Cytophaga sp. MBIC01485]
          Length = 391

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 182/392 (46%), Positives = 251/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   +  GT+VTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKRGTDVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIE 230
           LP   IF+    F+Y+TL +RLREL+FLN  ++I L DKR  +            + G++
Sbjct: 60  LPDRSIFTQTTEFSYETLANRLRELAFLNKGIKIILTDKRHKDEEGNFVTDVFQSEEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD  ++P++   I ++G ++ I +++AM +ND Y EN+  + NNI   +GGTHL+
Sbjct: 120 EFIRFLDDTRQPIIADVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLA 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V+  L A+LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+    L
Sbjct: 240 EVTSAVSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE DP   E+FLVEGDSAGG+AKQGR RE QAI+PLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNVEKAMTHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIRNIYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|51467892|ref|NP_001003834.1| DNA topoisomerase 2-alpha [Danio rerio]
 gi|49619131|gb|AAT68150.1| topoisomerase 2 [Danio rerio]
          Length = 1574

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 140/695 (20%), Positives = 253/695 (36%), Gaps = 65/695 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 33  YQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTGMNCRDITFVPGLYKIFDEILVNAA 92

Query: 54  DESLE-GYADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D        + I V ++ +  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 93  DNKQRDKTMNCIKVNIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 152

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KREGNI-YEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S    +    RE    ++ ++ + +             D 
Sbjct: 153 DEKKVTGGRNGYGAKLCNIFSLKFTVETACRESKRCFKQTWFDNMERAGESKIKPFDGDD 212

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + DT+     R  +++     V++ L  KR            
Sbjct: 213 YTCITFQPDLAKFKMQALDKDTVALLTRRAYDIAGSTKGVRVLLNGKR---------LPI 263

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
                +V    + K     SP+ +     N   ++ +  ++   + V  F N+I +  GG
Sbjct: 264 NNFRTYVDLYVKDKVDETGSPLTVVHEMVNERWEVCLTLSEKGFQQV-SFVNSIDKNKGG 322

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H   +   +  ++   V+K   +      V     +      ++  + +P F SQTKE 
Sbjct: 323 RHTDYVADQIVSKLIEVVKKKNKAGVA---VKPFQVKNHMWLFVNCLIENPSFDSQTKEN 379

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +   +        ++D             + I+  V   +  +      +    +   + 
Sbjct: 380 MTLQQKNFGSACSLSDKFVKQ-ANGCGIVESIMNWVKFKAQAQL---NKKCSAVKHTKIK 435

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   ++     L L EGDSA      G    GR R    + PLRGK+LNV 
Sbjct: 436 GVPKLDDANDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDR--YGVFPLRGKMLNVR 493

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  LG    ++  D      LRY K++IMTD D DG+HI+ LL+
Sbjct: 494 EASHKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQDGSHIKGLLI 553

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL-INQSLSEEIELFCD 577
            F     PSL+ + FL     P+   +  K            ++     S+      +  
Sbjct: 554 NFIHHNWPSLLRHNFLEEFITPIIKASNKKQEISFYSIPEFTEWKEKQSSIKSWKIKYYK 613

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +     K   P  D+        S     E  + +   + ++
Sbjct: 614 GLGTSTSKEAKEYFSDMTRHRIPFKYSGPADDEAIT--LAFSKKMIEERKEWLTSFMINR 671

Query: 638 LANRLNFIAEKSEKS-------WHGSINNSDILVK 665
              R + + E+           +H  IN   +L  
Sbjct: 672 RQRREHNLPEEYLYGQETKSLSYHDFINKELVLFS 706


>gi|300607832|emb|CBV35680.1| DNA gyrase B subunit [Pseudomonas sp. ML1]
          Length = 378

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 218/381 (57%), Positives = 289/381 (75%), Gaps = 3/381 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F
Sbjct: 1   VSGGLHGVGVSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ F    F++D    R+RELSFLNS V I L D+RS +       Y+GG+ AFV Y
Sbjct: 60  RPSAETFKNIHFSWDIXAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSA
Sbjct: 118 LNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLA
Sbjct: 238 VEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+G
Sbjct: 298 DCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVG 357

Query: 476 TLITALGTGIGQDSFDINKLR 496
           TLITALG GIG+D ++I+KLR
Sbjct: 358 TLITALGCGIGRDEYNIDKLR 378


>gi|18369818|dbj|BAB84104.1| DNA topoisomerase II [Penicillium citrinum]
          Length = 1100

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 145/698 (20%), Positives = 252/698 (36%), Gaps = 43/698 (6%)

Query: 13  DSIQILKGLDAVKKRPSMYIGD----------------------TDGESGLHHMIYEVLD 50
           +  Q L  L+ + KRP  YIG                            GL+ +  E++ 
Sbjct: 2   EQYQKLTQLEHIVKRPDTYIGSIEMTQQQMWVFNSETESMEFRNVSFVPGLYKIFDEIVV 61

Query: 51  NAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           NA D          I VT++ + G  +V +NGRGIP ++H +E I   E+I   L     
Sbjct: 62  NAADNKQNDKSMSEIRVTIDREKGEISVWNNGRGIPIEIHSKEKIYVPELIFGNLLTSSN 121

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILD-NPLVVTGSA 165
           ++    KV+GG +G G  + N  S+   L  +   +   Y+ ++   +       +T ++
Sbjct: 122 YDDNQKKVTGGRNGFGAKLCNVFSTEFTLETQDSNQKKKYKQTWTENMTKMGKAKITDAS 181

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             +  T VTF P    F ++  + D  +  ++ L   + +    +  K +     I  F 
Sbjct: 182 KGEDYTMVTFKPDFAKFGMEGIDDD-FEALVKLLVVYDLAGTAGVTVKLNKTRVPIRNFK 240

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +       +               I     +   ++    +DG  + V  F N+I    G
Sbjct: 241 QYMQMYTKAIRRERGDDGPAPKDEILTCSPDPRWEIGFSVSDGAFQQV-SFVNSIATTSG 299

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++ +   +        ++     K   ++     R      ++ ++ +P F+SQTKE
Sbjct: 300 GTHVNYIADQI---CNRLADQVKKKNKTGATLKAAQIRNHIFIFVNAQIVNPSFNSQTKE 356

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           +L +        S          E +    K  V   +     + A +  +     +   
Sbjct: 357 QLTTK------ASQFGSKCVLEEEFYKKILKTDVMNNILHFAAQKADQILKKSDGGRRTR 410

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVER 462
                  +      +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  
Sbjct: 411 MNNPKLVEANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRD 470

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A FD++  + EI  +   +G    ++  +   LRY  ++IMTD D DG+HI+ LL+ F  
Sbjct: 471 ASFDQISKNAEIQNIKNFIGLQHKKEYTETKGLRYGHLMIMTDQDHDGSHIKGLLINFLQ 530

Query: 523 RQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
            Q PSL+      I    P+  + +G      K           + L             
Sbjct: 531 AQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEEWLEAHKGERGWDHKY 590

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                  +  D  +    L +     H     E  +I   F+ +   E       +    
Sbjct: 591 YKGLGTSSTTDAQVYFRDLDRHLKEFHTMKDHEAELIELAFSKKKADER-KEWLRQFKPG 649

Query: 642 LNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                  S+ S+   IN   IL            V++G
Sbjct: 650 TYLDHSVSKISYTDFINKELILFSMADNQRSIPSVVDG 687


>gi|190148868|gb|ACE63409.1| DNA gyrase B subunit [Pseudonocardia yunnanensis]
          Length = 398

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 181/400 (45%), Positives = 252/400 (63%), Gaps = 17/400 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+ +SY VSGGLHGVGVSVVNALS  L + I  +G ++   +   +  
Sbjct: 1   EVIMTVLHAGGKFDGESYAVSGGLHGVGVSVVNALSVALDVEINTDGFVWRQHYARSVP- 59

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G     TG+ VTF P  DIF    FN +T++ RL+E++FLN  + I L D+R+ 
Sbjct: 60  GPLRK-GEPTKRTGSSVTFWPDGDIFETLTFNIETIRRRLQEMAFLNKGLTIVLRDERNG 118

Query: 217 EP---------------REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           +                +E T  Y  G+E FV++L++ K P+ +  +      +  ++++
Sbjct: 119 DNGEAEEPDAEGYVAKVKEYTFCYPNGLEDFVAHLNKSKDPIHKKLVAYTAEGEGHAVEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+   ++ GDD
Sbjct: 179 AMQWNSGYTESVYTFANTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPALSGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK+IV K
Sbjct: 239 IREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPAEAKLIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVQSAQARAAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           GR    QAILP+RGKI+NVE+AR D++L + E+  +ITAL
Sbjct: 359 GRDSMFQAILPIRGKIINVEKARIDRVLKNTEVQAIITAL 398


>gi|86211173|gb|ABC71060.2| DNA gyrase subunit beta [Pseudomonas pertucinogena]
          Length = 368

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 213/371 (57%), Positives = 280/371 (75%), Gaps = 3/371 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L + I+R G ++E ++ +G+   PL + G     +GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEELVMTIRRGGKVWEQTYHHGVPQAPLAIVGETE-TSGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS + FS   F++D L  RLRELSFLNS V I+L+D+R+ +       Y+GG+ AF
Sbjct: 60  IHFKPSKETFSSISFSWDILAKRLRELSFLNSGVGINLVDERTGKR--ELFCYEGGLSAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K  +           D I++++AM+WND ++EN+LCFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNVNKTTVNSIFHFNVQRDDGIAVEVAMQWNDSFNENLLCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR + +Y+E+    KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RGALTRSLNNYIEQEGLLKKLKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +N   S +L E P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPG
Sbjct: 238 KTAVEQEMNKFFSDYLLERPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFD+MLSSQ
Sbjct: 298 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDRMLSSQ 357

Query: 473 EIGTLITALGT 483
           E+GTLITALG 
Sbjct: 358 EVGTLITALGC 368


>gi|56675182|emb|CAI34893.1| DNA gyrase subunit B [Aeromonas sp. V97]
 gi|56675184|emb|CAI34894.1| DNA gyrase subunit B [Aeromonas sp. F507C]
 gi|56675186|emb|CAI34895.1| DNA gyrase subunit B [Aeromonas sp. V30]
 gi|56675188|emb|CAI34896.1| DNA gyrase subunit B [Aeromonas sp. V39]
 gi|56675190|emb|CAI34897.1| DNA gyrase subunit B [Aeromonas sp. V83]
 gi|66474565|gb|AAY46852.1| GyrB [Aeromonas caviae]
 gi|66474567|gb|AAY46853.1| GyrB [Aeromonas caviae]
 gi|66474569|gb|AAY46854.1| GyrB [Aeromonas caviae]
 gi|66474571|gb|AAY46855.1| GyrB [Aeromonas caviae]
 gi|95108301|emb|CAK18172.1| DNA gyrase subunit B [Aeromonas hydrophila subsp. anaerogenes]
          Length = 371

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 221/374 (59%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|19912077|dbj|BAB88350.1| DNA gyrase subunit B [Cytophaga sp. MBIC04661]
 gi|19912081|dbj|BAB88352.1| DNA gyrase subunit B [Cytophaga sp. MBIC04667]
 gi|19912083|dbj|BAB88353.1| DNA gyrase subunit B [Cytophaga sp. MBIC04668]
 gi|19912085|dbj|BAB88354.1| DNA gyrase subunit B [Cytophaga sp. MBIC04670]
 gi|19912087|dbj|BAB88355.1| DNA gyrase subunit B [Cytophaga sp. MBIC04681]
          Length = 391

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 184/392 (46%), Positives = 254/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  L   + R+G I++  +  G    P+   G    D GTEVTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETE-DRGTEVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
            P + IF+    ++Y+TL +R+RELSFLN  V IS+ DKR      E    T F   G++
Sbjct: 60  HPDNTIFTQTIEYSYETLANRMRELSFLNKGVTISITDKRQKDEKGEYVGETFFSNEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD +++ L+Q  I ++G +++I +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGNRESLIQGVIAMEGEKNDIPVEVAMIYNTSYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA +AR++ +RK V+    L
Sbjct: 240 EVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMSGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP+K E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +        +KLRYH
Sbjct: 360 NEEIKNMYTALGVTIGTEEDSKALNLDKLRYH 391


>gi|56675176|emb|CAI34890.1| DNA gyrase subunit B [Aeromonas enteropelogenes]
 gi|66474561|gb|AAY46850.1| GyrB [Aeromonas bestiarum]
 gi|66474577|gb|AAY46858.1| GyrB [Aeromonas sp. RK 217215]
 gi|95108299|emb|CAK18171.1| DNA gyrase subunit B [Aeromonas hydrophila subsp. dhakensis]
          Length = 371

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 223/374 (59%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|83775666|dbj|BAE65786.1| unnamed protein product [Aspergillus oryzae]
          Length = 1437

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 148/684 (21%), Positives = 258/684 (37%), Gaps = 55/684 (8%)

Query: 18  LKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAIDE 55
           L  L+ + KRP  YIG  +  S                      GL+ +  E++ NA D 
Sbjct: 23  LTQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDEIVVNAADN 82

Query: 56  ----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
               +     D I VT++ + G  +V +NGRGIP ++H +E I   E+I   L     ++
Sbjct: 83  KQNDANM---DEIRVTISRETGEISVWNNGRGIPIEMHAKEKIYVPELIFGHLLTSSNYD 139

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   +  +  R+   Y+ ++ + +          A  D
Sbjct: 140 DTQQKVTGGRNGFGAKLCNVFSTEFSIETQDSRQKKKYKQTWTSNMTKMGKAKITDAKGD 199

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
             T+VTF P    F +   + D      R +  L  + ++++    S  P      Y   
Sbjct: 200 DYTKVTFKPDYAKFGMDGMDNDFEALVKRRVYDLAGTAKVAVKLNGSRVPVRNFKKYMEM 259

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
               +        P  +    I     +   ++    +DG  + V  F N+I    GGTH
Sbjct: 260 YTKAIRRERGDDGPAAKDE--IITCSPDPRWEVGFAVSDGSFQQV-SFVNSIATTSGGTH 316

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++ +   +  ++   V+K   +     ++     R      ++ ++ +P F+SQTKE+L 
Sbjct: 317 VNYIADQICSKLADQVKKKNKNG---ATLKPAQIRNHIFIFVNAQIVNPAFTSQTKEQLT 373

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +   +   +  + +     + +  + + I+      A  +       R        L  A
Sbjct: 374 TKSSQFGSKCVLEEDFYKKILKTDVMSNILHFAQQKADQMLKKTDGGRRARMNNPKLTDA 433

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARF 465
           +  G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A F
Sbjct: 434 NKAG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDATF 487

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
           +++  + EI  +   LG    ++  D   LRY  ++IMTD D DG+HI+ LL+ F   Q 
Sbjct: 488 EQISKNAEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQF 547

Query: 526 PSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           PSL+      I    P+  + +G      K+      +          E     +G   K
Sbjct: 548 PSLLRIPEFLIEFITPIIKVWKGD----PKNPTKQRSFFTMPEYEAWKEEHKHERGWEHK 603

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN---VSLASKLANR 641
                            +D   +  +    Q    G+      ++          +    
Sbjct: 604 YYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDNEVGLIELAFSKKKADERKEWLRQFKPG 663

Query: 642 LNFIAEKSEKSWHGSINNSDILVK 665
                  S+ S+   IN   IL  
Sbjct: 664 TFLDHSVSKISYTDFINKELILFS 687


>gi|38453825|dbj|BAD02213.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 141/679 (20%), Positives = 246/679 (36%), Gaps = 41/679 (6%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+   G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPNMSEIRVTLDKQAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +     ++   +++++ N +             D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y     
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMYT 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +                I     +   ++    +DG  + V  F N+I    GGTH++
Sbjct: 241 KAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTHVN 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L + 
Sbjct: 300 YISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTR 356

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
             +   +  V+D     + +  +   I+      A  +       R        L  A+ 
Sbjct: 357 PSQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANK 416

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDK 467
            G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  D+
Sbjct: 417 AG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQ 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     P+
Sbjct: 471 ISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPT 530

Query: 528 LIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           L+   GFL     P+  + +G        +         +            K       
Sbjct: 531 LLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKKYYKGLG 590

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
             +  D  +    L +     H     E  +I   F+ +   E       +         
Sbjct: 591 TSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYLDH 649

Query: 647 EKSEKSWHGSINNSDILVK 665
              + ++   IN   IL  
Sbjct: 650 STDQITYTDFINKELILFS 668


>gi|56675174|emb|CAI34889.1| DNA gyrase subunit B [Aeromonas jandaei]
          Length = 371

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 223/374 (59%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+EK   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMEKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|112983266|ref|NP_001037009.1| DNA topoisomerase 2 [Bombyx mori]
 gi|6094494|sp|O16140|TOP2_BOMMO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II; Short=TOPOII
 gi|2338552|gb|AAB67168.1| topoisomerase II [Bombyx mori]
          Length = 1547

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 135/748 (18%), Positives = 271/748 (36%), Gaps = 77/748 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------------GLHHMIYE 47
            Q    L+ +  RP  YIG  +  +                           GL+ +  E
Sbjct: 36  YQKKSQLEHILLRPDTYIGSVERATETMWVYDKVKECMMQKELTSVPDCSFPGLYKIYDE 95

Query: 48  VLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           +L NA D        D+I + +N +  + +V +NG GIP  +HK+E +    +I   L  
Sbjct: 96  ILVNAADNKQRDPKMDVIKIDINQETNTISVYNNGSGIPVVMHKDEKMYVPTMIFGHLLT 155

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSF-INGILDNPLVVT 162
              +N +  KV+GG +G G  + N  S+   +    K+    ++ ++  N    +   + 
Sbjct: 156 SSNYNDEEEKVTGGRNGYGAKLCNIFSTKFTVETASKQYKKHFKQTWGSNMTKASEPKIK 215

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPR 219
            S  +D  T++ F P    F ++    D    +  R  +++  +  V++ L  +R     
Sbjct: 216 DSGKDDDFTKIVFSPDLAKFKMEKLEDDIVLLMSRRAYDVAASSQGVKVYLNGERLK--- 272

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                     + +V    + K      P+++   + +   ++A+  +D   + V  F N+
Sbjct: 273 ------INKFKDYVDLYIKGKDDENGQPLKVVYEKVSDRWEVALTISDMGFQQV-SFVNS 325

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I    GG H+  +  ++ + +   ++K     K   ++     +      ++  + +P F
Sbjct: 326 IATTKGGKHVDTVADSVVKNVLEVLKKKN---KGGVNIKPYQVKTHMWLFVNCLIVNPTF 382

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
            SQTKE +         +  +++     + +       +V+ VL  +  +   +  +   
Sbjct: 383 DSQTKENMTLQAKSFGSKCNLSEKFITAVTKCG-----LVESVLTWAKFKAQDQLVKASG 437

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGK 456
           +++  L          D   ++     L L EGDSA   A  G S   R++  + PL GK
Sbjct: 438 KKQSKLKGIPKLEDANDAGTKNAHLCTLILTEGDSAKTLAVSGLSVVGRDHYGVFPLEGK 497

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHI 513
            LNV  A   ++L + EI  LI  LG    +    ++    LRY K++IM D D DG+HI
Sbjct: 498 PLNVRDASHKQVLENVEINNLIKILGLQYKKKYNSVDDLKTLRYGKVMIMADQDQDGSHI 557

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           + L++ F     P L+   FL     P+   T+             E++           
Sbjct: 558 KGLIINFIHHNWPELLKLPFLEEFITPIVKATKKDKEISFYSLPEFEEWKKETENHHTYN 617

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
           +        S          + +  +  ++   +  +                 ++    
Sbjct: 618 IKYYKGLGTS---------TSKEAKEYFQNMDRHRIRFKYSGPTDDHHIELAFSKKGADQ 668

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
               L N ++ +  + E        +   L  +  + V     +    +        R  
Sbjct: 669 RKEWLTNHMDEVKRRKEIGL-----SERYLYTKETKTVTYSDFVNLELVLFSNGDNVRSI 723

Query: 694 SNRIEENYLT----ILSLICNGDKIKIT 717
            + I+         I + I   DK ++ 
Sbjct: 724 PSMIDGLKPGQRKVIFTCIKRNDKREVK 751


>gi|86169571|gb|ABC87025.1| DNA gyrase subunit B [Fructobacillus ficulneus]
          Length = 393

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 186/394 (47%), Positives = 268/394 (68%), Gaps = 3/394 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDT 169
              YKVSGGLHGVG SVVNALS+ L +++ R+G +Y M F  G +   +    G    + 
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTDLDVQVVRDGQLYYMDFQTGHVKTQMTKKDGPLPIER 60

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F P +DIF     +NY TL  R+REL+FLN  ++IS+ DKRS EP + +  ++GG
Sbjct: 61  GTVVHFKPDADIFQETTVYNYQTLLTRVRELAFLNKGLRISIEDKRSDEPLKESFHFEGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ +VSYLD  ++PL + P+ ++G  + I +++A+++  G  EN+  FTNNI   +GGTH
Sbjct: 121 IKEYVSYLDEEREPLFEEPVYVEGEENGIVVEVALQYTTGVKENLKTFTNNINTYEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ALTR I  Y  K    K+   S+ G+D REG T+++SIK PDP+F  QTK KL 
Sbjct: 181 ETGFKTALTRVINDYARKQKLIKEGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +S+ R   +   ++  S ++ E+P  A+ IV+K   A   R +A+RAR++TR++  L+I+
Sbjct: 241 NSDARQATDRMFSETFSRFMLENPAVARQIVEKGALAQRARLSAKRAREMTRKQSGLEIS 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLAD + +DP  SELF+VEGDS+GGSAKQGR+R  QAILP+RGKILNV +A  D++
Sbjct: 301 NLPGKLADNTSKDPAISELFIVEGDSSGGSAKQGRNRLTQAILPIRGKILNVGKATLDRV 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L+++EI +L TALG+G G D F++ K  YHKIII
Sbjct: 361 LANEEIRSLFTALGSGFG-DDFNVEKANYHKIII 393


>gi|116194666|ref|XP_001223145.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
 gi|88179844|gb|EAQ87312.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
          Length = 1715

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 150/707 (21%), Positives = 273/707 (38%), Gaps = 66/707 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S+     +Y     Q L  L  + KRP  YIG  +                         
Sbjct: 109 SNKTATETY-----QKLTQLQHIIKRPDTYIGSVERTDQKMWVYNKAEKLMENRTVGFVP 163

Query: 40  GLHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D S        + VT++ + G  +V +NG+GIP ++H++E     E
Sbjct: 164 GLYKIFDEILVNAADNSQRDSSMTYLKVTVDRETGEISVENNGKGIPIEMHEKEKCYIPE 223

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGIL 155
           +I   L  G  ++    K  GG +G G  + N  S    + ++  + G  Y+ ++   + 
Sbjct: 224 LIFGHLLTGSNYDDDEKKTVGGRNGYGAKLTNIFSQKFSIELQDSKNGKRYKQTWTENMG 283

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ----HRLRELSFLNSSVQISLI 211
                   S  +    +V+FLP    F ++D   D L+     R+ +++   S +++ L 
Sbjct: 284 KMEKAKINSNKSADFVKVSFLPDYKRFGMEDGIDDDLEGLIYRRVYDMAGTVSGIKVWLN 343

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-IDLAMRWNDGYH 270
            +      +          A              + +     R N     +    +DG  
Sbjct: 344 GEHLKINFKTYCELYAKSIANERGDVAVDGEKPVAKVEFDQQRHNGRLWQIGFTVSDGSF 403

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           + V  F NNI    GGTH++ +   +   +   + K         S+     R      +
Sbjct: 404 QQV-SFVNNIATTSGGTHVNYIADQICDALAKELTKKK----KGHSLKPSHFRNHIFIFI 458

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL-SAWLEEHPLEAKIIVKKVLDASMVR 389
           +  + +P F+SQTKE+L +      + +F +  + S    +    ++ I   +  A    
Sbjct: 459 NCLIDNPAFNSQTKEQLTTK-----MSAFGSKCVLSDQFLKKVKASEAIANIMEFADRKA 513

Query: 390 DAARRA----RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR-- 443
           D         +        L  A+  G       R   +  L L EGDSA G A  GR  
Sbjct: 514 DKMMAKSDGNKRSRISNDKLIDANWAG------TRRGHECTLILTEGDSARGLAVAGRAV 567

Query: 444 -SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
              +   + PLRGK+LNV  A  ++++ ++EI  +   LG    Q+  D   LRY  ++I
Sbjct: 568 LDPDRIGVFPLRGKMLNVRDASLEQIMKNKEIENIKKFLGLKHKQNYTDTKGLRYGHLMI 627

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           M D D+DG+HI+ LL+ F   Q PSL+  + F      P+  + +G + +  ++ ++  +
Sbjct: 628 MADQDLDGSHIKGLLINFLEVQFPSLLRIDDFFQEFITPVVKVWQGSNPKKPQNLKTFFN 687

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
               ++  +  +             L +  ++        KD   +  K  + Q   S +
Sbjct: 688 LPQYETWKDSHKSDLRRWKYKYLKGLGSSSNE--DAQIYFKDLDRHLKKFDVLQPEESQL 745

Query: 622 FNCESDQEINVSLASKLANRL---NFIAEKSEKSWHGSINNSDILVK 665
           F     ++   +    L N +      A  + KS+   ++   IL  
Sbjct: 746 FELAFSKKKADARKEWLGNFVPGTYLDATAARKSYTDFVHKELILFS 792


>gi|21238931|dbj|BAB96571.1| DNA gyrase subunit B [Skermania piniformis]
          Length = 418

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 181/421 (42%), Positives = 254/421 (60%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ L++ I R+G  +   + +     PL V G+    TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTTLEVEISRDGFHWAQQYKDAKP-GPL-VQGNPTRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T V F    DIF    +N++T+  RL+E++FLN  + I+L D+R+ E  E          
Sbjct: 59  TTVRFWADPDIFETTTYNFETVARRLQEMAFLNKGLTITLTDERADEVPEDQLGDTAAAP 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+E FV +++R K P+  S +   G      +++
Sbjct: 119 KSQEEEAAEAKAGTPKVRSRVYHYPGGLEDFVRHINRTKTPIHNSVVSFTGKGTGHEVEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R++LT  +  Y       K     + GDD
Sbjct: 179 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRASLTAVVNKYATDKKLIKDKDGKLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK+IV K
Sbjct: 239 IREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKVIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI+
Sbjct: 359 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIGKLRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|19912079|dbj|BAB88351.1| DNA gyrase subunit B [Cytophaga sp. MBIC04664]
          Length = 391

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 184/392 (46%), Positives = 254/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  L   + R+G I++  +  G    P+   G   +D GTEVTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGET-DDRGTEVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
            P + IF+    ++Y+TL +R+RELSFLN  V IS+ DKR      E    T F   G++
Sbjct: 60  HPDNTIFTQTIEYSYETLANRMRELSFLNKGVTISITDKRQKDEKGEYVGETFFSNEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD +++ L+Q  I ++G +++I +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGNRESLIQGVIAMEGEKNDIPVEVAMIYNTSYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA +AR++ +RK V+    L
Sbjct: 240 EVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMSGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP+K E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNMYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|38453819|dbj|BAD02210.1| DNA topoisomerase II [Trichophyton verrucosum]
          Length = 1089

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 140/679 (20%), Positives = 246/679 (36%), Gaps = 41/679 (6%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E     E+I   L     +N  
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQTYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +     ++   +++++ N +             D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y     
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMYT 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +                I     +   ++    +DG  + V  F N+I    GGTH++
Sbjct: 241 KAIKAERGEDPTSASDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTHVN 299

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L + 
Sbjct: 300 YISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTR 356

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
             +   +  V+D     + +  +   I+      A  +       R        L  A+ 
Sbjct: 357 PSQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANK 416

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDK 467
            G       +D     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  D+
Sbjct: 417 AG------TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQ 470

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     P+
Sbjct: 471 ISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPT 530

Query: 528 LIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           L+   GFL     P+  + +G        +         +            K       
Sbjct: 531 LLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKKYYKGLG 590

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
             +  D  +    L +     H     E  +I   F+ +   E       +         
Sbjct: 591 TSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYLDH 649

Query: 647 EKSEKSWHGSINNSDILVK 665
              + ++   IN   IL  
Sbjct: 650 STDQITYTDFINKELILFS 668


>gi|66474543|gb|AAY46841.1| GyrB [Aeromonas media]
          Length = 371

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 220/374 (58%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLMENPGDAKIVVNKIMDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|322707413|gb|EFY98991.1| DNA topoisomerase 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1647

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 159/767 (20%), Positives = 277/767 (36%), Gaps = 55/767 (7%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S       Y     Q L  L+ + KRP  YIG  +                         
Sbjct: 119 SSKTATEMY-----QKLTQLEHIIKRPDTYIGSVEKTDQQMWVYNKETSQMVYKNISFVP 173

Query: 40  GLHHMIYEVLDNAIDES-LEGYA-DIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
           G + +  E++ NA D S  EG     + V +N   G   V +NG+GIP  +H++E I   
Sbjct: 174 GFYKIFDEIMVNAADNSQREGSGMTYMKVNINRATGEINVENNGKGIPIVIHEKEKIYIP 233

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGI 154
           E+I   L AG  F+    K  GG +G G  + N  S    +  +    G  Y+ ++ + +
Sbjct: 234 EMIFGHLLAGSNFDDNEKKTVGGRNGYGAKLCNVFSQEFTVECQDSGNGKRYKQTWTDNM 293

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ----HRLRELSFLNSSVQISL 210
                    S  +     +TF P  D F + +   D L+     R+ +++     V++ L
Sbjct: 294 QKMQKAKITSNKSADFVRITFKPDYDRFGMPEGIDDDLEALLYRRVYDMAGTVHGVKVYL 353

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
             ++               ++  +     +       + I   + +   ++A   +DG  
Sbjct: 354 NGEQIKLKDFKAYCDL-YAKSIAAERTAEEGGTPTCTVDIDKDKSHPRWEVAFTVSDGTF 412

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           + V  F N+I    GGTH++ +   +T  +   ++K       K+S      R      +
Sbjct: 413 QQV-SFVNSIATTTGGTHVNYIADQITGSLLKALDKKKKGHSLKQSH----LRNHIFIFI 467

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL-SAWLEEHPLEAKIIVKKVLDASMVR 389
           +  + +P F+SQTKE++ +      V  F +  +      +   ++  I   +  A    
Sbjct: 468 NCFIENPAFNSQTKEQMTTK-----VSQFGSKCVLGDNFLKAIAKSDAIENIMDFAQK-- 520

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRE 446
            A +        K      +   +      R   +  L L EGDSA G A  GR     +
Sbjct: 521 KADKMLSKSDGSKRARVSNAKLVEANLAGTRRGHECTLILTEGDSAKGLAVSGRAILDPD 580

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
              + PLRGK+LNV  A  D++  +QEI  +   LG    Q   D   LRY  ++IMTD 
Sbjct: 581 KIGVFPLRGKLLNVRDASLDQITKNQEIQNIKQFLGLKHKQVYTDTKSLRYGHLMIMTDQ 640

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGF-LYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           D DG+HI+ LL+ F   Q PSL+     L     P+  + +G   +  +  +S       
Sbjct: 641 DHDGSHIKGLLINFLQVQFPSLLKIPQFLQEFITPIVKVWQGPDPKKPQRLKSFFTQPQY 700

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFI-DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
               E  +             L     +DA      + +     +    E+A +  +   
Sbjct: 701 DEWKESHKAELSRWQSKYFKGLGTSSNEDAQVYFTNLDNHLKEFEVMKSEEAELFDLVFS 760

Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFS 684
           +   +                    E ++   ++   IL            V++G     
Sbjct: 761 KKKADARKEWLGNFIPGTFLDHSTKEITYTDFVSKELILFSMADNLRSIPSVIDGLKPGQ 820

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
               Y     N I++  +  L+   +       G  SL  TI  + +
Sbjct: 821 RKVLYACFKRNLIKDKKVVELAGYVSEHTAYHHGEASLQQTIIGLAQ 867


>gi|21238923|dbj|BAB96567.1| DNA gyrase subunit B [Agromyces ramosus]
          Length = 411

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 184/413 (44%), Positives = 260/413 (62%), Gaps = 23/413 (5%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG SVVNALSS L + ++R+G+++  S+  G+ D PL   G A + TG
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSSRLDVEVRRQGSVWTQSYTVGVPDAPLAE-GGASDATG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------------- 217
           T +TF PS D+F   +F+Y+TL+ R ++ +FLN  ++I+L D RS               
Sbjct: 60  TTITFWPSPDVFETVEFDYETLRTRFQQYAFLNKGLRITLTDLRSGHVDIDPDDTAESVT 119

Query: 218 ----PREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGSR--DNISIDLAMRWNDGY 269
               PR  T  Y+ G+  +V YL+R KK        I  +       I++++AM+W   Y
Sbjct: 120 DAAAPRTDTFLYERGLVDYVEYLNRSKKTDLVNDEIISFESEDTDRKIALEVAMQWTTAY 179

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E+V  + N I   +GGTH  G R+ALT  I  Y  +    K+   ++ GDD REG T+V
Sbjct: 180 TESVHTYANTINTHEGGTHEEGFRAALTTLINRYAREKGILKEKDDNLSGDDVREGLTAV 239

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+ +P+F  QTK KL ++E +S V+    D L  W E +P +A+ I++K + A+  R
Sbjct: 240 ISVKLSEPQFEGQTKTKLGNTEAKSFVQKVTGDQLGDWFERNPTQARDIIRKAIQAATAR 299

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AAR+AR+ TRRKG+L+   +PGKL DCS +DP  SE+F+VEGDSAGGSA QGR+ E QA
Sbjct: 300 IAARKAREATRRKGLLESGGMPGKLKDCSSKDPSISEIFIVEGDSAGGSAVQGRNPETQA 359

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ILPLRGKILNVE+AR D+ L++ E+  +ITA G GIG+D F+  K RYHKI++
Sbjct: 360 ILPLRGKILNVEKARLDRALANNEVQAMITAFGAGIGED-FNTEKARYHKIVL 411


>gi|56675164|emb|CAI34884.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 371

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 222/374 (59%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|19912089|dbj|BAB88356.1| DNA gyrase subunit B [Cytophaga sp. MBIC04666]
          Length = 391

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 184/392 (46%), Positives = 253/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  L   + R+G I++  +  G    P+   G    D GTEVTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETE-DRGTEVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
            P + IF+    ++Y+TL +R+RELSFLN  V IS+ DKR      E    T F   G++
Sbjct: 60  HPDNTIFTQTIEYSYETLANRMRELSFLNKGVTISITDKRQKDEKGEYVGETFFSNEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD +++ L+Q  I ++G +++I +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGNRESLIQGVIAMEGEKNDIPVEVAMIYNTSYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA +AR++ +RK V+    L
Sbjct: 240 EVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMSGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP+K E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNMYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|313621661|gb|EFR92452.1| DNA gyrase subunit B [Listeria innocua FSL S4-378]
          Length = 286

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 129/288 (44%), Positives = 184/288 (63%), Gaps = 9/288 (3%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVHESASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVG SVVNALS+ L++ + REG  Y   F  G +   + V G   +  GT V 
Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVH 178

Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F P   IF+    F++DTL+ R REL+FLN  + IS+ DKR          Y+GGI ++V
Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
            +L++ K  + + PI ++G RD+I ++++M++N G+  N++ F NNI 
Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIH 286


>gi|56675178|emb|CAI34891.1| DNA gyrase subunit B [Aeromonas sp. F458]
 gi|56675180|emb|CAI34892.1| DNA gyrase subunit B [Aeromonas hydrophila]
 gi|95108297|emb|CAK18170.1| DNA gyrase subunit B [Aeromonas hydrophila subsp. ranae]
          Length = 371

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 222/374 (59%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|149234581|ref|XP_001523170.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453279|gb|EDK47535.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1492

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 155/764 (20%), Positives = 266/764 (34%), Gaps = 58/764 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +++ Q L  L+ + KRP  YIG  +                         GL+ +  E+L
Sbjct: 80  SETYQKLSQLEHILKRPDTYIGSVEKTRTEMWCFDVESESMKFQEVTIVPGLYKIFDEIL 139

Query: 50  DNAIDESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I V ++ +     V ++G+GIP ++H +E +   E+I   L    
Sbjct: 140 VNAADNKIRDPSMKNIKVKIDPENNVIQVMNDGKGIPVEIHTKEKMYIPELIFGNLLTSS 199

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL-DNPLVVTGS 164
            ++    KV+GG +G G  + N  S+  ++       G +Y+  + + +       +T  
Sbjct: 200 NYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQVWTDNMTKVGKPKITTL 259

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
                 T++TF+P    F +   + D    L+ R+ +L     +  I L DKR       
Sbjct: 260 KTKKEYTKITFMPDLQKFGMDSLDEDLLSVLRRRVYDLCGTVRNCNIYLNDKRLSVNSFK 319

Query: 222 TM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                        S           +   I     N   ++A   +DG    V  F N+I
Sbjct: 320 AYVEMYVKAIRERSPEPEGDAESKPATTTIVHEVFNDRWEVAFAVSDGNFNQV-SFVNSI 378

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
               GGTH+  +   +  ++   + K     K K  +   + R+     ++  + +P F+
Sbjct: 379 ATTAGGTHVKYVSDQIITKLVETLSKR-EKGKKKLMIKPQEVRDNMFIFINSLIENPAFT 437

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-IVKKVLDASMVRDAARRARDLT 399
           SQTKE+L +   +        +   A         K  I  K+   +   +     +   
Sbjct: 438 SQTKEQLTTKPSQF----GGKEKFIATENLINRILKTGIADKIRAIANANEDKALQKADG 493

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLR 454
            +K  +              +D  K  L L EG SA      G    GR        PLR
Sbjct: 494 SKKLRIKNQVNLVDANKAGTKDGLKCTLILTEGLSALNLAVAGLTVVGRD--YYGCFPLR 551

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD--INKLRYHKIIIMTDADVDGAH 512
           GK+LNV  A  D++  + EI  L   +G    +      I  LRY  I+IMTD D DG+H
Sbjct: 552 GKLLNVREASADQVSKNIEINALKQIIGLQHKKVYTQENIKSLRYGHIMIMTDQDQDGSH 611

Query: 513 IRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQS 567
           I+ L++ F     P L+   GFL     P+  +T      K +         E +   + 
Sbjct: 612 IKGLIINFLETSFPGLLDIPGFLLQFITPIVKVTVNGRGAKKVIPFYSMPEFEAWREGEG 671

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
            +        ++           ++       L +     H     + + I   F+ +  
Sbjct: 672 QNC-----RWTQKYYKGLGTSTPLEAREYFTALDRHLKRFHALQGEDASCIDLAFSKKKA 726

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687
            +             N   E +E      IN   IL            +L+G        
Sbjct: 727 DDR-KEWLQNFVPGDNLDPEMNEIPISDFINKELILFSMSDNVRSIPSMLDGLKPGQRKI 785

Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
            Y         E  +  L+           G  SL+ TI ++ +
Sbjct: 786 LYGCFKRKLKNEIKVAQLAAYVADVSSYHHGEQSLVQTIIAMAQ 829


>gi|56675150|emb|CAI34877.1| DNA gyrase subunit B [Aeromonas sp. V47]
 gi|56675152|emb|CAI34878.1| DNA gyrase subunit B [Aeromonas media]
 gi|56675154|emb|CAI34879.1| DNA gyrase subunit B [Aeromonas sp. V168]
 gi|56675156|emb|CAI34880.1| DNA gyrase subunit B [Aeromonas sp. V69]
 gi|56675160|emb|CAI34882.1| DNA gyrase subunit B [Aeromonas sp. V6]
 gi|56675162|emb|CAI34883.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 371

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 220/374 (58%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|23451168|gb|AAN32689.1| DNA gyrase subunit B [Aeromonas media]
 gi|56675158|emb|CAI34881.1| DNA gyrase subunit B [Aeromonas sp. F674P]
          Length = 371

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 220/374 (58%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|209863333|gb|ACI88766.1| DNA gyrase subunit B [Aeromonas sp. JH67]
          Length = 369

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 223/371 (60%), Positives = 282/371 (76%), Gaps = 3/371 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F PS 
Sbjct: 2   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSP 60

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++
Sbjct: 61  TIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQN 118

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR 
Sbjct: 119 KTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRT 178

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 179 LNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 238

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E
Sbjct: 239 MGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQE 298

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 299 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 358

Query: 480 ALGTGIGQDSF 490
           ALG GIG+D +
Sbjct: 359 ALGCGIGRDEY 369


>gi|23429496|gb|AAN11317.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|23451166|gb|AAN32688.1| DNA gyrase subunit B [Aeromonas veronii bv. veronii]
 gi|24021181|gb|AAN40981.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|56675166|emb|CAI34885.1| DNA gyrase subunit B [Aeromonas sp. JF2638]
 gi|56675168|emb|CAI34886.1| DNA gyrase subunit B [Aeromonas sp. F474]
 gi|56675170|emb|CAI34887.1| DNA gyrase subunit B [Aeromonas sp. JF2689]
 gi|66474573|gb|AAY46856.1| GyrB [Aeromonas veronii bv. sobria]
 gi|66474575|gb|AAY46857.1| GyrB [Aeromonas veronii bv. sobria]
 gi|66474599|gb|AAY46869.1| GyrB [Aeromonas veronii]
 gi|124377264|emb|CAM32365.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 371

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 222/374 (59%), Positives = 283/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPA 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|19912109|dbj|BAB88366.1| DNA gyrase subunit B [Cytophaga sp. MBIC01482]
          Length = 391

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 182/392 (46%), Positives = 251/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  LK  + R+G I+E  +  G    P+   G   +  GT+VTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKRGTDVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIE 230
           LP   IF+    F+Y+TL +RLREL+FLN  ++I L DKR  +            + G++
Sbjct: 60  LPDRSIFTQTTEFSYETLANRLRELAFLNKGIKIILTDKRHKDEEGNFVTDVFQSEEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD  ++P++   I ++G ++ I +++AM +ND Y EN+  + NNI   +GGTHL+
Sbjct: 120 EFIRFLDDTRQPIIADVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLA 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V+  L A+LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+    L
Sbjct: 240 EVTSAVSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE DP   E+FLVEGDSAGG+AKQGR RE QAI+PLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNVEKAMTHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIRDIYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|291234700|ref|XP_002737286.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Saccoglossus
           kowalevskii]
          Length = 1649

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 142/669 (21%), Positives = 249/669 (37%), Gaps = 68/669 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES-------------------------GLHHMIYEVL 49
            Q    L+ +  RP  YIG  +  +                         GL+ +  E+L
Sbjct: 45  YQKKTQLEHILLRPDTYIGSVEPLTQNMWVFDNDIGDNGGLCYREITFVPGLYKIFDEIL 104

Query: 50  DNAIDE----SLEGYADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
            NA D     +     D I +T++ D    +V +NG+GIP   H+ E +    +I   L 
Sbjct: 105 VNAADNKQRDAKM---DCIKITIDPDNNQISVWNNGKGIPVVEHQTEKVFVPTLIFGHLL 161

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVT 162
               +N    KV+GG +G G  + N  SS   +          ++  + N +        
Sbjct: 162 TSSNYNDDERKVTGGRNGYGAKLCNIFSSKFTVTTASMEYHKQFKQVWKNNMDKASEPAI 221

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPR 219
            S      TEV+F P    F ++  + DT+     R  +++ +N  V++ L  KR     
Sbjct: 222 KSFDGKDFTEVSFQPDLSKFKMEKLDKDTVALLTRRAYDIAGINKGVKVYLNGKR----- 276

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                     + +V    + K      P+++     N   ++ +  ++     V  F N+
Sbjct: 277 ----LPVKSFKDYVDLYVKDKTDENDQPLKVVHEICNERWEVCITLSEKGFNQV-SFVNS 331

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I    GG H+  +   +  ++   V+K     K   ++     +      ++  + +P F
Sbjct: 332 IATTKGGRHVDYVVDRIVEKVIDVVKKKN---KGGINIRPFQIKNHIWVFVNCLVENPTF 388

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
            SQTKE +     +      ++D             + I+  V   +         +   
Sbjct: 389 DSQTKENMTLQVKKFGSVCKLSDKFIKQTL-TCGIVESIMNWVKFKAQ---NLLNKKCSA 444

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGK 456
            +   L          D   ++ K   L L EGDSA   A  G S   R+   + PLRGK
Sbjct: 445 AKHSKLRGIPKLDDANDAGTKNSKDCTLILTEGDSAKTLAVSGLSIVGRDKYGVFPLRGK 504

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHI 513
           +LNV  A   +++ + EI  +I  +G    +     +    LRY K++IMTD D DG+HI
Sbjct: 505 LLNVREATHKQIMENAEINNVIKIMGLQYKKSYDSDDALKTLRYGKLMIMTDQDQDGSHI 564

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EI 572
           + LL+ F     PSL+ + FL     P+   T+GK +         E++           
Sbjct: 565 KGLLVNFIHHNWPSLLKHKFLEEFITPIVKATKGKEVFTFYSLPEFEEWKKETPNHHTWR 624

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
             +    G  +  + + +  D ++     K   P       + A I+  F+ +   E   
Sbjct: 625 VKYYKGLGTSTNKEAKEYFSDMVRHRIPFKYVGPQ------DDAAITLAFSKKKTDERKE 678

Query: 633 SLASKLANR 641
            L   L  R
Sbjct: 679 WLTDWLGER 687


>gi|209863343|gb|ACI88771.1| DNA gyrase subunit B [Aeromonas sp. JH68]
          Length = 371

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 219/371 (59%), Positives = 281/371 (75%), Gaps = 3/371 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS 
Sbjct: 4   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSS-GTGTEVRFWPSP 62

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++
Sbjct: 63  TIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQN 120

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR 
Sbjct: 121 KTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRT 180

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 181 LNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 240

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E
Sbjct: 241 MGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQE 300

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 301 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 360

Query: 480 ALGTGIGQDSF 490
           ALG GIG+D +
Sbjct: 361 ALGCGIGRDEY 371


>gi|6644317|gb|AAF21002.1|AF208251_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 387

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 227/390 (58%), Positives = 289/390 (74%), Gaps = 3/390 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNA +  L L ++R G++YE ++  G    PL   G A   TGTEV F 
Sbjct: 1   SGGLHGVGVSVVNARADKLLLTMRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL
Sbjct: 60  PSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+WND Y E V  FTN IPQ DGGTHL G R+AL
Sbjct: 118 NQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYWFTNTIPQGDGGTHLVGFRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           LITALG GIG+D ++ +KLR       TDA
Sbjct: 358 LITALGCGIGRDEYNPDKLRVSHHHHHTDA 387


>gi|330924028|ref|XP_003300481.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
 gi|311325363|gb|EFQ91408.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
          Length = 1723

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 142/706 (20%), Positives = 269/706 (38%), Gaps = 56/706 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +   Q+L  L+ + KRP  YIG  + ++                      GL+ +  E+L
Sbjct: 143 SSKYQMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSESDSMEFRDVTYVPGLYKIFDEIL 202

Query: 50  DNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D          I VT++ + G  ++ ++G+GIP ++HKE GI   E+I   L    
Sbjct: 203 VNAADNKQNDKNMSEIRVTVDRETGEISIKNDGKGIPIEIHKEHGIYVPEMIFGHLLTSS 262

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSA 165
            ++    KV+GG +G G  + N  S+   +     ++   Y  ++   +           
Sbjct: 263 NYDDDQQKVTGGRNGYGAKLCNVFSTEFTVETVDSKQKKKYRQTWTENMSKMGKAKISDI 322

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            ++  T+V++      F +   + D    ++ R  +++     V++ L   R        
Sbjct: 323 KSEDYTKVSWKADYARFGMSGIDDDFEAMVKRRTYDMAGTLRGVKVYLNGDRIKLTSFAK 382

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                 +       D+ K    +    I   + +   D+    +DG    V  F N+I  
Sbjct: 383 YME---MYTKSISRDQGKSEDDKEKDVIITDKLD-RWDIGFAVSDGSFNQV-SFVNSIAT 437

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++ +   +  ++ + V K   +      +     +      ++  + +P F+SQ
Sbjct: 438 TSGGTHVNHIADQIVEKLMAIVNKKNKAAVK---LKPAQIKNHLFLFVNCSIVNPAFTSQ 494

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE+L +   +   +  ++D           +  +I   +  A     A +  +     K
Sbjct: 495 TKEQLTTRPSQFGSKPVLSDK----FLNAIAKTDVIQNIMHFAQQ--KADQMMKKTDGNK 548

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKILN 459
                 +          +D     L L EG+SA   A  GR   +++   + PLRGK+LN
Sbjct: 549 RNRISNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLN 608

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFD--INKLRYHKIIIMTDADVDGAHIRTLL 517
           V  A  D+++ + EI  +   +G    ++     +  LRY  ++IMTD D DG+HI+ LL
Sbjct: 609 VRDATVDQIMKNAEIQNIKKFMGLQHKKEYTMADMKSLRYGHLMIMTDQDHDGSHIKGLL 668

Query: 518 LTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           + F   Q PSL+   GFL     P+  + +G      K+  S++ +       E  E   
Sbjct: 669 INFLQCQFPSLLKIPGFLLEFITPIVKVWKGD----PKNPRSMKSFFSMPEYEEWKEQHQ 724

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             KG   K        D        KD   +  +  + +     +      ++   +   
Sbjct: 725 HEKGWDHKYYKGLGTSDIPDAQVYFKDLDTHMKRFQVMREEEEKLIELAFSKKKADARKD 784

Query: 637 KLANRL---NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
            L + +   +      + S+   +N   IL            V++G
Sbjct: 785 WLRDFVPGQHLDLTTPDISYDDFVNKELILFSMADNVRSIPSVIDG 830


>gi|19912091|dbj|BAB88357.1| DNA gyrase subunit B [Cytophaga sp. T-424]
          Length = 391

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 181/391 (46%), Positives = 252/391 (64%), Gaps = 10/391 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  L   + R+G I++  +  G    P+   G    D GTEVTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETE-DRGTEVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGIE 230
            P + IF+    ++Y+TL +R+RELSFLN  V I++ DKR  + +        +   G+ 
Sbjct: 60  HPDNTIFTQTTEYSYETLANRMRELSFLNKGVTITITDKRQKDEKGDYVGETFYSNEGLR 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD +++PL+Q  I ++G ++NI +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGNREPLIQGVIAMEGEKNNIPVEVAMMYNTSYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA +AR++ +RK V+    L
Sbjct: 240 EVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMSGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP+K E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRY 497
           ++EI  + TALG  IG +         KLRY
Sbjct: 360 NEEIKNMYTALGVTIGTEEDSKALNLEKLRY 390


>gi|19912071|dbj|BAB88347.1| DNA gyrase subunit B [Cytophaga sp. MBIC04682]
 gi|19912073|dbj|BAB88348.1| DNA gyrase subunit B [Cytophaga sp. MBIC04687]
          Length = 391

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 184/392 (46%), Positives = 253/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  L   + R+G I++  +  G    P+   G    D GTEVTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETE-DRGTEVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
            P + IF+    ++Y+TL +R+RELSFLN  V IS+ DKR      E    T F   G++
Sbjct: 60  HPDNTIFTQTIEYSYETLVNRMRELSFLNKGVTISITDKRQKDEKGEYVGETFFSNEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD +++ L+Q  I ++G +++I +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGNRESLIQGVIAMEGEKNDIPVEVAMIYNTSYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA +AR++ +RK V+    L
Sbjct: 240 EVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMSGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP+K E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNMYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|22830795|dbj|BAC15613.1| DNA topoisomerase II [Aspergillus ochraceus]
          Length = 1101

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 140/661 (21%), Positives = 251/661 (37%), Gaps = 52/661 (7%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDN 51
             Q L  L+ + KRP  YIG T+  +                      GL+ +  E++ N
Sbjct: 3   KYQKLTQLEHIIKRPDTYIGSTERTTQQMWVYNSGTESMEYRDVSFVPGLYKIFDEIVVN 62

Query: 52  AIDESLEGYAD----IITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           A D     + D     + +T++ + G  +V +NGRGIP ++H +E I   E+I   L   
Sbjct: 63  AAD---NKHNDAKMNEMRITIDREAGEISVWNNGRGIPIEIHSKEKIYVPELIFGHLLTS 119

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGS 164
             ++    KV+GG +G G  + N  S+   L  +   +   Y+ ++   +          
Sbjct: 120 SNYDDSQQKVTGGRNGFGAKLCNVFSTEFTLETQDSHQKKKYKQTWTENMTKMGKAKITD 179

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           A  D  T+VTF P    F +   + D      R +  L  +  +++    +         
Sbjct: 180 AKGDDYTKVTFKPDFAKFGMDGIDDDFESLVKRRVYDLAGTANVAVKLNGTRVAVRNFRK 239

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y       +        P  +    I     +   ++    +DG  + V  F N+I    
Sbjct: 240 YMEMYTKAIRKERGDDGPPSKDE--IITCSPDPRWEIGFAVSDGSFQQV-SFVNSIATTS 296

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH++ +   +  ++   V+K   S     ++     R      +   + +P F+SQTK
Sbjct: 297 GGTHVNYIADQICTRLADQVKKKNKSG---ATLKSAQIRNHIFIFVKALIVNPAFTSQTK 353

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L +   +   +  +++     + +  + + I+      A  +       R        
Sbjct: 354 EQLTTKASQFGSKCPLDEDFYKKVLKTEVMSNILHFAEQKADQILKKGDTGRRTRMNNPK 413

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVE 461
           L  A+  G       R+     L L EG+SA G A  GR+    +   + PLRGK+LNV 
Sbjct: 414 LVDANKAG------TREGHHCTLILTEGESAKGLAMAGRAVVGPDLFGVFPLRGKLLNVR 467

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
            A FD++  + EI ++   +G    ++  +   LRY  ++IMTD D DG+HI+ LL+ F 
Sbjct: 468 DASFDQISKNVEIQSIKNFIGLQHKKEYTETKGLRYGHLMIMTDQDHDGSHIKGLLINFL 527

Query: 522 FRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
             Q PSL+      I    P+  + +G      K+    + +       E  E     +G
Sbjct: 528 QAQFPSLLKIPEFLIEFITPIIKVWKGD----PKNPTKQKSFFTMPEHDEWREAHKHERG 583

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
              K                 +D   +  +    Q   +G+      ++        L  
Sbjct: 584 WDHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDGEAGLIELAFSKKKADERKEWLRQ 643

Query: 641 R 641
            
Sbjct: 644 Y 644


>gi|199974894|gb|ACH92121.1| DNA gyrase subunit B [Thiothrix caldifontis]
          Length = 374

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 225/376 (59%), Positives = 295/376 (78%), Gaps = 2/376 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALSS L+L I+R G +Y+  +  G    PL + G     TGT V F PS++
Sbjct: 1   HGVGISVVNALSSNLELTIRRNGKLYQQMYKLGDPVAPLAIIGDTE-GTGTSVRFWPSAE 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF++ +F+YD L  RLRELSFLNS V+I LID+R  E RE    Y+GGI+AFV++L+R+K
Sbjct: 60  IFALTEFHYDILAKRLRELSFLNSGVRIHLIDRR-GEGREDIFEYEGGIKAFVAHLNRNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+  + I     RD++ +++A++WND Y EN+ C+TNNIPQ+DGG+HLSG R+ALTR +
Sbjct: 119 APIHNNIIYFTTERDDVGVEVALQWNDSYQENIFCYTNNIPQRDGGSHLSGFRAALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+E +  +KK+K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +VE+ +
Sbjct: 179 NSYIESAGLAKKEKVSPNGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVEAAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L+ +L E P EAK+I  K+++A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 239 NERLTEFLLESPTEAKLIAGKMIEAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVERARFDKM+SSQE+GTLI A
Sbjct: 299 DPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMISSQEVGTLIIA 358

Query: 481 LGTGIGQDSFDINKLR 496
           LG GIG++ ++I+KLR
Sbjct: 359 LGCGIGREEYNIDKLR 374


>gi|169606618|ref|XP_001796729.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
 gi|111065066|gb|EAT86186.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
          Length = 1705

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 146/694 (21%), Positives = 274/694 (39%), Gaps = 58/694 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +   Q+L  L+ + KRP  YIG  + ++                      GL+ +  E+L
Sbjct: 131 SSKYQMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSTTESMEYRDVSYVPGLYKIFDEIL 190

Query: 50  DNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D          I VT++ + G  ++ ++G+GIP ++H E GI   E+I   L    
Sbjct: 191 VNAADNKQNDKNMSEIRVTVDRESGEVSILNDGKGIPIEVHAEHGIYVPEMIFGHLLTSS 250

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILD-NPLVVTGS 164
            ++    KV+GG +G G  + N  S    +     ++   Y  ++   +       +T  
Sbjct: 251 NYDDNQQKVTGGRNGYGAKLCNVFSKEFTVETVDSKQKKKYRQTWTENMSVMGKAKITDF 310

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
              D  T++++      F +   + D    ++ R  +++     +++ L  +R       
Sbjct: 311 KSGDDYTKISWKADYKRFGMDGIDDDFEALIKRRTYDMAGTLRGIKVYLNKERVKVTSFA 370

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                      ++    + +   Q  + I    D    D+    +DG    V  F N+I 
Sbjct: 371 KYMEM--YTKAIAREQGNNEDDKQKDVIITDKHDR--WDIGFAVSDGSFNQV-SFVNSIA 425

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   +  ++ + ++K+  + K K +      +      ++  + +P F+S
Sbjct: 426 TTSGGTHVNYISDQIVEKLMAVMKKNKAAVKLKPAQ----IKNHIFLFVNCSIVNPAFTS 481

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE+L +   +   +  + D     +E+       +++ ++  +  + A +  +     
Sbjct: 482 QTKEQLTTKASQFGSKPVLTDKFLKAIEKTE-----VIQNIMHFAQ-QTADKMLKKTDGN 535

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKIL 458
           K      +          +D     L L EG+SA   A  GR   +++   + PLRGK+L
Sbjct: 536 KRNRINNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLL 595

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADVDGAHIRTL 516
           NV  A  D++L +QEI  +   +G    +D    D+  LRY  ++IMTD D DG+HI+ L
Sbjct: 596 NVRDASVDQILKNQEIQNIKKFMGLQHKKDYTVADMKGLRYGHLMIMTDQDHDGSHIKGL 655

Query: 517 LLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           L+ F   Q PSL+   GFL     P+  + +G          SL+ +       E  E  
Sbjct: 656 LINFLQCQFPSLLRIPGFLLEFITPIVKVWKGDPKH----PRSLKSFFSMPEYEEWKEQH 711

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
              KG   K        D        KD   +  +  + +A    +      ++   +  
Sbjct: 712 KLEKGWDHKYFKGLGTSDIPDAQVYFKDLDTHMKRFQVMRAEEEKLIELAFSKKKADARK 771

Query: 636 SKLANRL---NFIAEKSEKSWHGSINNSDILVKR 666
             L N +   +      E S+   +N   IL   
Sbjct: 772 EWLGNFVPGNHLDLTTPEISYDDFVNKEFILFSI 805


>gi|308153118|dbj|BAJ22148.1| DNA gyrase subunit B [Kutzneria viridogrisea]
          Length = 403

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 170/405 (41%), Positives = 253/405 (62%), Gaps = 15/405 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVGVSVVNAL++ +++ I R+G  +   +      + L       + TG
Sbjct: 1   SDSYAVSGGLHGVGVSVVNALATRMEVEICRDGFQWRQRYERSAPAHALEKLAPT-DSTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T +T+    DIF    +N +T+  RL+E++FLN  + I L D+R  +             
Sbjct: 60  TVITYWADPDIFETTVYNLETVARRLQEMAFLNKGLTIVLRDERVADEDTEADAEGQVAA 119

Query: 222 ----TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y GG+E FV ++++ ++ L +  I      D++ +++AM+WN GY E+V  F 
Sbjct: 120 IKEQVFHYPGGLEDFVRHINKSREELHKKVIAFDAKGDDLEVEIAMQWNTGYSESVYTFA 179

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G R+ALTR +  Y +     K+   ++ G+D REG  +++S+K+ +P
Sbjct: 180 NTINTHEGGTHEEGFRAALTRVVNEYAKDKKLLKEKDGNLSGEDIREGLAAIISVKLKEP 239

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL ++  +S V+   N+ L+ W + HP EAKII+ K + ++  R AAR+AR+
Sbjct: 240 QFEGQTKTKLGNTSAKSFVQKACNEWLADWFDRHPAEAKIIISKAVSSAQARLAARKARE 299

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           L RRKG L+I  LPGKL DC   +P++ E+++VEGDSAGGSAK+GR    QAILP+RGKI
Sbjct: 300 LVRRKGALEIGGLPGKLKDCRSTNPEECEVYIVEGDSAGGSAKEGRDSMYQAILPIRGKI 359

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 360 INVEKARIDRVLKNAEVQSMITAFGTGI-HDEFDIAKLRYHKIVL 403


>gi|212659912|gb|ACJ37012.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 267

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 143/268 (53%), Positives = 192/268 (71%), Gaps = 2/268 (0%)

Query: 47  EVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           EV+DN++DE+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAG
Sbjct: 1   EVVDNSVDEALAGHADSILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAG 60

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL       
Sbjct: 61  GKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVS 119

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
              GT + F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R     Y+
Sbjct: 120 AKRGTTLRFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYE 178

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGG
Sbjct: 179 GGIRSFVEHLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGG 238

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDK 314
           THL+G R+ALTR + +Y+E++  +++ K
Sbjct: 239 THLAGFRAALTRTLGNYIEQNGIARQAK 266


>gi|209863325|gb|ACI88762.1| DNA gyrase subunit B [Aeromonas sp. JH123]
          Length = 368

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 222/371 (59%), Positives = 282/371 (76%), Gaps = 3/371 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS 
Sbjct: 1   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSP 59

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++
Sbjct: 60  TIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQN 117

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR 
Sbjct: 118 KTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRT 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 LNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E
Sbjct: 238 MGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 298 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 357

Query: 480 ALGTGIGQDSF 490
           ALG GIG+D +
Sbjct: 358 ALGCGIGRDEY 368


>gi|148470178|gb|ABQ66037.1| gyrase b [uncultured bacterium]
          Length = 433

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 190/435 (43%), Positives = 267/435 (61%), Gaps = 21/435 (4%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF++K YK++GGLHGVGV VVNALS  L   +KR   IY   F  G+    L
Sbjct: 3   MTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSRLLIAVVKRPEGIYYEKFEKGVPSGGL 62

Query: 160 VVTGSAGNDT-----------------GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
                                      G  + F P  ++F   +F+Y  +  R++EL+FL
Sbjct: 63  RFVEKGSWGNTGEPEIDSIEPKLAQDHGLIIKFYPDPEVFEDLNFSYQVIHERIKELAFL 122

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           N  V IS+ D+R      +    +GG+  FV YL    + +++ PI      ++  ++ A
Sbjct: 123 NPQVAISIKDERINASEVMHF--EGGLSQFVDYLGEGHQSILKEPIYNLEETEDTVVEFA 180

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
             +N+   E +  + NNI   +GGTH++G R+ L+R +  Y  K+    K   S++ DD 
Sbjct: 181 FLYNNSTSEIMQSYVNNISTVEGGTHVTGFRAGLSRAVQDYA-KNHDLVKGVESIVSDDV 239

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +VL +K+  P+F  QTK KL +S VR +V+S     L ++ E  P  A+ IV++V
Sbjct: 240 REGLVAVLHVKVIAPQFEGQTKSKLGNSTVRGIVQSSTEKYLKSYFESFPNIAQNIVRRV 299

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + A+  R+A+R A++L RRK  L+  +LPGKLADC+  DP K+EL++VEG+SAGGSAKQ 
Sbjct: 300 IMAAAAREASRNAKELVRRKSALESGNLPGKLADCTSSDPAKAELYIVEGESAGGSAKQA 359

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+R+ QAILPLRGKILNVE+A   K L+++EI  LIT +GT I +DS D++KLRY KIII
Sbjct: 360 RTRDYQAILPLRGKILNVEKAADIKTLANEEIRNLITVMGTNI-KDSLDLSKLRYGKIII 418

Query: 503 MTDADVDGAHIRTLL 517
           MTDADVDG+HIRTLL
Sbjct: 419 MTDADVDGSHIRTLL 433


>gi|56269784|gb|AAH86970.1| Top2a protein [Danio rerio]
 gi|197247280|gb|AAI65253.1| Top2a protein [Danio rerio]
          Length = 1570

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 139/695 (20%), Positives = 252/695 (36%), Gaps = 65/695 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 33  YQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTGMNCRDITFVPGLYKIFDEILVNAA 92

Query: 54  DESLE-GYADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D        + I V ++ +  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 93  DNKQRDKTMNCIKVNIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 152

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KREGNI-YEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S    +    RE    ++ ++ + +             D 
Sbjct: 153 DEKKVTGGRNGYGAKLCNIFSLKFTVETACRESKRCFKQTWFDNMGRAGESKIKPFDGDD 212

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + DT+     R  +++     V++ L  KR            
Sbjct: 213 YTCITFQPDLAKFKMQALDKDTVALLTRRAYDIAGSTKGVRVLLNGKR---------LPI 263

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
                +V    + K     SP+ +     N   ++ +  ++   + V  F N+I    GG
Sbjct: 264 NNFRTYVDLYVKDKVDETGSPLTVVHEMVNERWEVCLTLSEKGFQQV-SFVNSIATTKGG 322

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H   +   +  ++   V+K   +      V     +      ++  + +P F SQTKE 
Sbjct: 323 RHTDYVADQIVSKLIEVVKKKNKAGVA---VKPFQVKNHMWLFVNCLIENPSFDSQTKEN 379

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +   +        ++D             + I+  V   +  +      +    +   + 
Sbjct: 380 VTLQQKNFGSACSLSDKFVKQ-ANGCGIVESIMNWVKFKAQAQL---NKKCSAVKHTKIK 435

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   ++     L L EGDSA      G    GR R    + PLRGK+L+V 
Sbjct: 436 GVPKLDDANDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDR--YGVFPLRGKMLSVR 493

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  LG    ++  D      LRY K++IMTD D DG+HI+ LL+
Sbjct: 494 EASHKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQDGSHIKGLLI 553

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL-INQSLSEEIELFCD 577
            F     PSL+ + FL     P+   +  K            ++     S+      +  
Sbjct: 554 NFIHHNWPSLLRHNFLEEFITPIIKASNKKQEISFYSIPEFTEWKEKQSSIKSWKIKYYK 613

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +     K   P  D+        S     E  + +   + ++
Sbjct: 614 GLGTSTSKEAKEYFSDMTRHRIPFKYSGPADDEAIT--LAFSKKMIEERKEWLTSFMINR 671

Query: 638 LANRLNFIAEKSEKS-------WHGSINNSDILVK 665
              R + + E+           +H  IN   +L  
Sbjct: 672 RQRREHNLPEEYLYGQETKSLSYHDFINKELVLFS 706


>gi|2196830|gb|AAB80832.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 217/409 (53%), Positives = 289/409 (70%), Gaps = 4/409 (0%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT L   GKF   S  V  G   VGVSVVNALS  L+L I+R+G +YE  + +G   
Sbjct: 1   EVIMTVLRPLGKFEDPSKDVYVGWPRVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            P+   G A   TGTE+ F PS + F+  +F+Y+ L  R+RELSFLNS V I LID+R  
Sbjct: 61  EPIKEIGEAT-KTGTEIRFWPSHETFTDTEFHYELLAKRIRELSFLNSGVGIRLIDERDN 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLC 275
           +       Y+GGI+AFV YL+R+K P+ +        RD+ I++++AM+WNDG+ E++ C
Sbjct: 120 KD--EFFHYEGGIKAFVEYLNRNKTPVNKDVFHFSQERDDGITVEVAMQWNDGFQESIFC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R+ALTR + +Y+E    +KK K +  GDD REG T+V+S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVP 237

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV+  VE  + + L+ +L E+P + K+IV K+ DA+  R+AAR+A
Sbjct: 238 DPKFSSQTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADTKMIVGKIKDAARAREAARKA 297

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++TR KGVLD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 298 REMTRCKGVLDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKG 357

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           KI  VE+A FDKML  QE+ T ITALG GIG            +++IMT
Sbjct: 358 KIFKVEKACFDKMLFFQEVATFITALGCGIGCGVLTALHTGGEEVVIMT 406


>gi|56675172|emb|CAI34888.1| DNA gyrase subunit B [Aeromonas sp. JF2853]
          Length = 371

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 221/374 (59%), Positives = 283/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGT+V F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTQVRFWPSPA 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|22450180|dbj|BAC10607.1| DNA gyrase B subunit [Shewanella sairae]
          Length = 377

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 222/380 (58%), Positives = 294/380 (77%), Gaps = 4/380 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALSS L++ I+R+G +YE  + +G+ D P+   G A   TGTE+ F P
Sbjct: 1   GGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAAIGEAT-KTGTEIRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ FS   F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+
Sbjct: 60  SAETFSDVLFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R AL
Sbjct: 118 VNKTPVNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E+   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 178 TRNLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLAD
Sbjct: 238 EQTMGEQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 CQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTGIGQDSFDINKLR 496
           LITALG GIG+D +D +K R
Sbjct: 358 LITALGCGIGRDEYDPDKTR 377


>gi|209863329|gb|ACI88764.1| DNA gyrase subunit B [Aeromonas sp. JH121]
          Length = 371

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 222/371 (59%), Positives = 282/371 (76%), Gaps = 3/371 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS 
Sbjct: 4   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSP 62

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++
Sbjct: 63  TIFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQN 120

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR 
Sbjct: 121 KTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRT 180

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 181 LNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 240

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E
Sbjct: 241 MGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQE 300

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 301 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 360

Query: 480 ALGTGIGQDSF 490
           ALG GIG+D +
Sbjct: 361 ALGCGIGRDEY 371


>gi|56675196|emb|CAI34900.1| DNA gyrase subunit B [Aeromonas schubertii]
          Length = 371

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 227/374 (60%), Positives = 288/374 (77%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+R+G++YE ++  G    PL   G A   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL++ K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSILLTDER--DGREVHFCYEGGIKAFVEYLNQSK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q        +D I +++AM+WNDGY E V CFTNNIPQ+DGGTHL+G R+ALTR +
Sbjct: 118 TPIHQKVFHFSADQDGIGVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLAGFRAALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKTSASGDDVREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L+ +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 238 ADKLADFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|226528040|dbj|BAH56562.1| DNA gyrase subunit B [Pseudomonas alcaliphila]
          Length = 380

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 219/383 (57%), Positives = 288/383 (75%), Gaps = 4/383 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ F
Sbjct: 1   VSGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAAVGDT-DGTGTQIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS + F+   FN+D L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV Y
Sbjct: 60  KPSEETFANIHFNWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEY 117

Query: 236 LDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+ +K  + Q     IQ   D + +++A+ WND ++EN+LCFTNNIPQ+DGGTHL+G R 
Sbjct: 118 LNTNKTVVNQVFHFNIQREEDGVGVEVALXWNDCFNENLLCFTNNIPQRDGGTHLAGFRF 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E    +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 ALTRHLNNYIESEGLAKKFKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL++VEGDSAGG AKQG +R+  AILPL+GKILNVERARFD+M+SSQE+
Sbjct: 298 ADCQEKDPALSELYIVEGDSAGGXAKQGXNRKTXAILPLKGKILNVERARFDRMISSQEV 357

Query: 475 GTLITALGTGIGQDSFDINKLRY 497
           GTLITALG GIG+D ++I+KLRY
Sbjct: 358 GTLITALGCGIGRDEYNIDKLRY 380


>gi|148291140|emb|CAN84516.1| DNA gyrase B subunit [Brucella microti CCM 4915]
 gi|148291142|emb|CAN84517.1| DNA gyrase B subunit [Brucella microti]
          Length = 386

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 253/387 (65%), Positives = 314/387 (81%), Gaps = 4/387 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTE 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V+FLPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R  + +E  + Y GG+  F
Sbjct: 61  VSFLPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEF 120

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y+D+ KK L++ PI I+  +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G 
Sbjct: 121 VKYIDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 180

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTRQIT Y + S  +KK+K  + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 181 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 240

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R VVE  VN+ LS WLEEHP   KI+V+KV+ A+  R+AAR+ARD+T RK  L + SLPG
Sbjct: 241 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPG 299

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS 
Sbjct: 300 KLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSD 359

Query: 473 EIGTLITALGTGIGQ---DSFDINKLR 496
           ++GTLITALGT IG+     F+ +KLR
Sbjct: 360 QVGTLITALGTSIGKDETHGFNADKLR 386


>gi|15834657|ref|NP_296416.1| DNA topoisomerase IV subunit B [Chlamydia muridarum Nigg]
 gi|270284822|ref|ZP_06194216.1| DNA topoisomerase IV subunit B [Chlamydia muridarum Nigg]
 gi|270288851|ref|ZP_06195153.1| DNA topoisomerase IV subunit B [Chlamydia muridarum Weiss]
 gi|301336202|ref|ZP_07224404.1| DNA topoisomerase IV subunit B [Chlamydia muridarum MopnTet14]
 gi|7190072|gb|AAF38923.1| DNA gyrase, subunit B [Chlamydia muridarum Nigg]
          Length = 605

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 158/608 (25%), Positives = 262/608 (43%), Gaps = 53/608 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
           + ++Y   SI  L  LD ++ R  MYIG     S    G++ +  EV+DNAIDE + G+ 
Sbjct: 3   KKTAYSEASIISLASLDHIRLRAGMYIGRLGDGSQSEDGVYTLFKEVVDNAIDEFVMGHG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGG 119
             I +T +     ++ D GRGIP             VI     ++ G K+NQ  +  S G
Sbjct: 63  HTIFITGDS-QKLSIRDEGRGIPLGK----------VIDCVSKINTGAKYNQDVFHFSVG 111

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVG+  VNALS    +R  R     + SF  GIL +     G   +  GTE++F P  
Sbjct: 112 LNGVGLKAVNALSQHFSVRSVRNKKFLKASFSKGILLH--TEQGDTQDADGTEISFSPDK 169

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           ++F    F+ + L+ ++R+ ++L+  + I    +            K G+        + 
Sbjct: 170 ELFENFSFHDEFLKKKIRQYTYLHPGLTILYNGET--------FVSKLGLADLFEEEIQT 221

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
                           +  +       +   E    F N     DGGTHL   +  + + 
Sbjct: 222 PLLYPPIAF------QHPDLSFLFSHTETSSEQYFSFVNGQETTDGGTHLIAFKEGVVKG 275

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  + +K+             D R+G    ++IK+  P F SQTK KL ++ +R+ +   
Sbjct: 276 INEFFKKN---------FSAQDIRDGIAGCIAIKIASPIFESQTKNKLGNTNIRADLAKR 326

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRRKGVLDIASLPGKLADCS 418
           V + +   L++HP  A  I +K+      R  A    ++L  ++  L       +     
Sbjct: 327 VKEAVILTLKKHPSSADRIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                     S +F+ EG+SA  S    R+   QA+  LRGK +NV  ++ + +  + E+
Sbjct: 387 LTDNSLYGNNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L TALG         +  LRY+ II+ TDADVDG HIR L++TFF +    ++    L
Sbjct: 447 FYLATALGL----HKNSLQNLRYNHIILATDADVDGMHIRNLMITFFLKTFLPVVEQNHL 502

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFID 592
           +I++ PL+ +       Y   EE     +      E           G IS  + ++FI 
Sbjct: 503 FILETPLFKVRYKDETFYCYSEEEKLSTIERLGKKESSLEITRFKGLGEISPKEFKSFIG 562

Query: 593 DALKIDKL 600
             +++  +
Sbjct: 563 PDMRLTPV 570



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 47/130 (36%)

Query: 695 NRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGE-------- 744
           N +      +  +    +          L TI  +G+K   + + R+KGLGE        
Sbjct: 500 NHLFILETPLFKVRYKDETFYCYSEEEKLSTIERLGKKESSLEITRFKGLGEISPKEFKS 559

Query: 745 -----M--------NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
                M        NA      TL+     LL+            F   MG   + R+ F
Sbjct: 560 FIGPDMRLTPVSPPNAD-----TLDA----LLQ------------FY--MGKNTKERKHF 596

Query: 792 IQENSLPSAL 801
           I EN L + L
Sbjct: 597 IIEN-LVTNL 605


>gi|209863311|gb|ACI88755.1| DNA gyrase subunit B [Aeromonas sp. JH118]
          Length = 370

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 222/371 (59%), Positives = 281/371 (75%), Gaps = 3/371 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS 
Sbjct: 3   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSP 61

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++
Sbjct: 62  AIFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQN 119

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR 
Sbjct: 120 KTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRT 179

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 180 LNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 239

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E
Sbjct: 240 MGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQE 299

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 300 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 359

Query: 480 ALGTGIGQDSF 490
           ALG GIG+D +
Sbjct: 360 ALGCGIGRDEY 370


>gi|46136571|ref|XP_389977.1| hypothetical protein FG09801.1 [Gibberella zeae PH-1]
          Length = 1650

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 151/770 (19%), Positives = 278/770 (36%), Gaps = 64/770 (8%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------G 40
                  Y       L  L  + KRP  YIG  +                         G
Sbjct: 100 QKTATEMYT-----KLTQLQHILKRPDTYIGSVERTEQQLWVLNKETQLMEYKAINFVPG 154

Query: 41  LHHMIYEVLDNAIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGIS 94
           L+ +  E+L NA D      S+      + + ++ + G  +V +NG+GIP  LH++E I 
Sbjct: 155 LYKIFDEILVNAADNKQRDSSM----TYMKINIDREAGVISVENNGKGIPIVLHEKENIY 210

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFIN 152
             E+I   L AG  F+    K  GG +G G  + N  S+   L  +    G  Y+ ++ +
Sbjct: 211 IPELIFGHLLAGSNFDDDEKKTVGGRNGYGAKLCNVFSTEFNLECQDSVSGKKYKQTWTD 270

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT----LQHRLRELSFLNSSVQI 208
            +         ++ + + T +TF P    F ++D   D     +  R+ ++      +++
Sbjct: 271 NMNTMHKAKITASKSASYTRITFKPDFKRFGMEDGIDDDLESLMYRRVYDMVGTIRGIKV 330

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            L  ++               ++        +       + +   + +   ++    +DG
Sbjct: 331 FLNGEQVKIKDFKAYCDL-YAKSIAKDRLDEEGGSPTCTVEMDKDKSHPRWEVGFAVSDG 389

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
             + V  F N+I    GGTH++ +   +T+ + + + K       K++      R     
Sbjct: 390 TFQQV-SFVNSIATTAGGTHVNYIADQITKSLLNTLNKKRKGHTLKQNH----LRNHIFV 444

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            ++  + +P FSSQTKE++ +   +   +  + D     + +      I+      A  +
Sbjct: 445 FINCYIDNPAFSSQTKEQMTTKASQFGSKCTLGDDFLKKVAKSDAIQNILDMAEKKADKM 504

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SR 445
              +   +        L  A+  G       R   +  L L EGDSA G A  GR     
Sbjct: 505 MAKSDGNKRSRVNNAKLVEANFAG------TRRGHECTLILTEGDSAKGLAVSGRAILDP 558

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           +   + PLRGK+LNV  A  D++  +QEI  +   LG        D   LRY  ++IM D
Sbjct: 559 DRIGVFPLRGKLLNVRDASPDQIAKNQEIQNIKQFLGLKHKTSYTDTKNLRYGHLMIMAD 618

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLI 564
            D DG+HI+ LL+ F   Q PSL+     +     P+  + +G + +  +  +S      
Sbjct: 619 QDHDGSHIKGLLINFLEVQFPSLLRIPDFFREFITPIVKVWQGPNPKKPQKLKSFFTQPE 678

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
            +   +      +     SK                  +   +  +  + +   S +   
Sbjct: 679 YEEWKD--VHKNELTRWHSKYFKGLGTSSNEDAQVYFTNLDDHLKEFEVMKPEESKMLEL 736

Query: 625 ESDQEINVSLASKLANRL---NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
              ++   +    L N +          +  +   IN   IL            VL+G  
Sbjct: 737 AFSKKKADARKEWLGNFVPGTFLDHSAKQICYSDFINRELILFSMADNMRSIPSVLDGFK 796

Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
                  Y     N I++  +  L+   +       G  SL  TI  + +
Sbjct: 797 PGQRKVIYACFKRNLIKDKKVVELAGYVSEQTAYHHGEQSLQQTIIGLAQ 846


>gi|308153156|dbj|BAJ22167.1| DNA gyrase subunit B [Mycobacterium cookii]
          Length = 421

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 179/423 (42%), Positives = 254/423 (60%), Gaps = 33/423 (7%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +Y VSGGLHGVGVSVVNALS+ L++ I R+G+ +  ++   +    L   G     T
Sbjct: 2   DNGAYAVSGGLHGVGVSVVNALSTRLEVEISRDGSEWYQTYDRSVP-GTLKQ-GDKTKKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------- 214
           GT V F     IF   +++++T+  RL+E++FLN  + I+L D+R               
Sbjct: 60  GTTVRFWADPGIFETTNYDFETVARRLQEMAFLNKGLTINLSDERVTKDEVVDEVVSDTA 119

Query: 215 ---------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
                            + +  T  Y GG+  FV +++R K P+  S +   G      +
Sbjct: 120 EAPKSAEEKAAESVAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHSSIVDFSGKGPGHEV 179

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ G
Sbjct: 180 EIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDPNLTG 239

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P +AK ++
Sbjct: 240 DDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFESNPADAKTVL 299

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSA
Sbjct: 300 NKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSA 359

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           K GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHK
Sbjct: 360 KSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHK 418

Query: 500 III 502
           I++
Sbjct: 419 IVL 421


>gi|298712279|emb|CBJ26730.1| DNA topoisomerase II [Ectocarpus siliculosus]
          Length = 1809

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 142/692 (20%), Positives = 247/692 (35%), Gaps = 66/692 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG T+  S                      GL+ +  E++ NA
Sbjct: 46  YQKKTQLEHILLRPDTYIGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNA 105

Query: 53  ID-----ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
            D     E++      + VT++ + G  +V ++G GIP  +HKE  I   E+I   L  G
Sbjct: 106 ADNKQRDENM----SKLKVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTG 161

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVVTG- 163
             F+    K +GG +G G  + N  S+   +    R+ G  Y   F N + +        
Sbjct: 162 SNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRDAGKHYRQVFRNNMQEKEAPEIDC 221

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                  T +TF P    F +     DT+   LR+  +  +               +   
Sbjct: 222 DYEGPDFTCITFTPDWKRFHMTGMEADTIAL-LRKRVYDMAGCMGGYAGASVKVYLDNRR 280

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
               G + ++S  +  + P++   I   G R  + + ++    D   + V  + N I   
Sbjct: 281 VKVSGFKDYMSMYEGMETPVIFESI---GDRWEVGVAVS---ADSVFQQV-SYVNAICTV 333

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH+  + +   + I   +         K  V G   +      ++  + +P F+SQ+
Sbjct: 334 KGGTHVECVAN---QVINKLLPVLKRKH--KAEVKGHFVKNHLCVFVNGLVENPAFNSQS 388

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE L S +        ++D     LE+       IV +VL  +  +   +  +   ++  
Sbjct: 389 KEALTSKDTLFGSVPKISDAGLKKLEKSE-----IVDRVLSWAKHKQNQQLNKKSGKKSS 443

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKIL 458
            L   +             +   L L EGDSA      G    GR R    + PL+GK+L
Sbjct: 444 KLTGITKLDDANHAGTAKSQDCTLILTEGDSAKTLAVSGLGVVGRDR--YGVFPLKGKLL 501

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A   ++L ++EI  ++  LG        D  +LRY  ++IMTD D DG+HI+ LL+
Sbjct: 502 NVREATGPQVLKNEEIQNVVKILGLKFNHTYDDTKQLRYGHLMIMTDQDHDGSHIKGLLI 561

Query: 519 TFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            F     PSL+  +GFL     P+  +++G++            +               
Sbjct: 562 NFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWK-----EGHANGKGW 616

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
           +             +       L         +       +  +   +   E        
Sbjct: 617 NAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRG 676

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
                +        ++   IN   IL      
Sbjct: 677 FKAGTHADYNVESVTYESFINKELILFSMEDN 708


>gi|209863305|gb|ACI88752.1| DNA gyrase subunit B [Aeromonas sp. JH117]
          Length = 368

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 222/371 (59%), Positives = 281/371 (75%), Gaps = 3/371 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS 
Sbjct: 1   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSP 59

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++
Sbjct: 60  AIFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQN 117

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR 
Sbjct: 118 KTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRT 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 LNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E
Sbjct: 238 MGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 298 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 357

Query: 480 ALGTGIGQDSF 490
           ALG GIG+D +
Sbjct: 358 ALGCGIGRDEY 368


>gi|25006391|dbj|BAC24015.1| DNA topoisomerase II [Epidermophyton floccosum]
          Length = 1091

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 142/684 (20%), Positives = 244/684 (35%), Gaps = 49/684 (7%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q +  L+ + KRP  YIG  +                         GL+ +  E+L NA
Sbjct: 1   YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 60

Query: 53  IDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D          I VTL+ + G  +V +NGRGIP ++H +E I   E+I   L     +N
Sbjct: 61  ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHSKEQIYIPELIFGHLLTSSNYN 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S    +      E   +++++ N +             D
Sbjct: 121 DMQEKVTGGRNGYGAKLCNIFSKEFTVETADSHEKKKFKLTWTNNMSTMGKAKISENKGD 180

Query: 169 TGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             T+VTF P    F +   + D    ++ R+ +++       + L   R P         
Sbjct: 181 DYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCG-TTVKLNGTRIPVKSFKKYME 239

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                   +      +        I     +   ++    +DG  + V  F N+I    G
Sbjct: 240 MYTK----AIKTERGEDPTSDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSG 294

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++ +   +        +      K   ++     +      ++ ++ +P F+SQTKE
Sbjct: 295 GTHVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKE 351

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           +L +   +   +  V+D     + +  +   I+      A  +       R        L
Sbjct: 352 QLTTRPSQFGSKCIVSDDFLRKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKL 411

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVER 462
             A+  G              L L EGDSA G A  GR+    +   + PLRGK+LNV  
Sbjct: 412 TDANKAGTKEGY------HCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRD 465

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A  D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +  
Sbjct: 466 ASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQ 525

Query: 523 RQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
              P+L+   GFL     P+  + +G        +         +            K  
Sbjct: 526 VAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKKTHAHDKRWQKKY 585

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                  +  D  +    L +     H     E  +I   F+ +   E       +    
Sbjct: 586 YKGLGTSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPG 644

Query: 642 LNFIAEKSEKSWHGSINNSDILVK 665
                     ++   IN   IL  
Sbjct: 645 TYLDHSTDHITYTDFINKELILFS 668


>gi|38453797|dbj|BAD02199.1| DNA topoisomerase II [Arthroderma racemosum]
          Length = 1089

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 139/679 (20%), Positives = 248/679 (36%), Gaps = 43/679 (6%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEMHMWVYNSTTELMEYRDVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                   + I VTL+ + G  +V +NGRGIP ++H +E I   E+I   L     +N  
Sbjct: 61  NKQNDPNMNEIRVTLDKEAGEISVWNNGRGIPVEIHSKEKIYIPELIFGHLLTSSNYNDL 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +     ++   +++++ N +             D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSKKNKKFKLTWTNNMSTMGKAKITDCKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+VTF P    F +   + D      R +  +  +   ++    +  P +    Y     
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTKIPIKTFKKYMEMYT 240

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
             +       +        I     +   ++    +DG  + V  F N+I    GGTH++
Sbjct: 241 KAIKTERG--EDPTSDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGTHVN 297

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L + 
Sbjct: 298 YISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNAQIVNPAFTSQTKEQLTTR 354

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
             +   +  V+D     + +  +   I+      A  +       R        L  A+ 
Sbjct: 355 SSQFGSKCVVSDDFMKKVMKTRVMEDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANK 414

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDK 467
            G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV  A  D+
Sbjct: 415 AG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQ 468

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +     P+
Sbjct: 469 ISKNSEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPT 528

Query: 528 LIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           L+   GFL     P+  + +G        +         +            K       
Sbjct: 529 LLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHTNDKKWQKKYYKGLG 588

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
             +  D  +    L +     H     E  +I   F+ +   E       +         
Sbjct: 589 TSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTYLDH 647

Query: 647 EKSEKSWHGSINNSDILVK 665
              + ++   IN   IL  
Sbjct: 648 STDQITYTDFINKELILFS 666


>gi|19074112|ref|NP_584718.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
 gi|19068754|emb|CAD25222.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
          Length = 1144

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 131/590 (22%), Positives = 233/590 (39%), Gaps = 60/590 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEVL 49
            ++ Q    ++ +  RP  YIG  + E                       GL+ +  E++
Sbjct: 5   EETYQKKTPVEHILLRPDTYIGSVEKEAQEMYVWDEENGRMVYKSIEYVPGLYKIFDEII 64

Query: 50  DNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +     D+I V+++ +    +V +NG+GIP  +HKEE +   E+I   L    
Sbjct: 65  VNAADNKIRDPKMDVIKVSIDPEGNEISVYNNGKGIPVRIHKEENVYVPELIFGNLLTSS 124

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFINGILDNPLVVTGS 164
            +N    KV+GG +G G  + N  S    +    +      Y   + + +          
Sbjct: 125 NYNDDEKKVTGGRNGYGAKLCNIFSKEFVVETA-DCEVKKYYRQRYRDNMGVKEDPEISR 183

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLIDKRSPEPREI 221
                 T++TF P    F +   + D +   + R+ +L+ +   V+I L +KR       
Sbjct: 184 YTKGDFTKITFKPDLRRFKMTRLDDDIVALLRKRVYDLAGIVKDVKIFLNEKRIE----- 238

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                      V     + K  +     +     N   +LA+  ++   + V  F N I 
Sbjct: 239 -----------VKGFKEYVKLYIPPGASVVHQVINDRWELALTTSEEQFQQV-SFVNGIC 286

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   +   +   ++K     +   SV     R      ++  + +P F S
Sbjct: 287 TTKGGTHVNHVVERIVDPLVEAIQKK----EKGLSVRPFQVRSCMFVFINSLIDNPAFDS 342

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE L              + +     +  ++   IV+K+   +  + + +  +    +
Sbjct: 343 QTKENLTLRASAF---GSKCEPMGD-FVKSIIKNTPIVQKITSFAKAKQSQQLKKTDGAK 398

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
              L                 K   L L EGDSA   A  G S   R+   + PLRGK+L
Sbjct: 399 TSRLSGIPKLEDANFAGTSRSKDCTLILTEGDSAKTLAVAGLSVVGRDAYGVFPLRGKLL 458

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A   +++ + EI ++   LG    +   D++ LRY  ++IMTD D DG+HI+ L++
Sbjct: 459 NVREASHKQIMENAEISSIKKILGLQHNKVYEDVSSLRYGHVMIMTDQDHDGSHIKGLII 518

Query: 519 TFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
            F     PSL+   GFL     P+   T+   ++        E++  N+ 
Sbjct: 519 NFLDHFYPSLLKIPGFLQEFITPIIRATKKGQVRDFFTLPEYEEFKKNED 568


>gi|57490121|gb|AAW51350.1| GyrB [Pseudomonas fluorescens]
          Length = 375

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 217/378 (57%), Positives = 285/378 (75%), Gaps = 4/378 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L L I+R G I+E ++++G+   P+ + G     TGT++ 
Sbjct: 1   KVSGGLHGVGVSVVNALSEELILTIRRSGKIWEQTYVHGVPQEPMKIVGDCE-TTGTQIH 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV 
Sbjct: 60  FKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVE 117

Query: 235 YLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           YL+ +K  + Q     IQ   D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G R
Sbjct: 118 YLNTNKTAVNQVFHFNIQREEDGIGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 SALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE
Sbjct: 298 LADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQE 357

Query: 474 IGTLITALGTGIGQDSFD 491
           +GTLIT LG GIG+D ++
Sbjct: 358 VGTLITGLGCGIGRDEYN 375


>gi|308153146|dbj|BAJ22162.1| DNA gyrase subunit B [Saccharothrix mutabilis]
          Length = 403

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 179/405 (44%), Positives = 256/405 (63%), Gaps = 15/405 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ + + +KR+G  +   F      + L   G+  ++TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTAVDVEVKRDGFTWNQRFEASKPAHELRK-GAPTDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T  TF    +IF   ++N +T+  RL+E++FLN  + I L D+R     E          
Sbjct: 60  TTTTFWADPEIFETTEYNLETISRRLQEMAFLNKGLTIVLRDERVRAEDEEADAEGHVAR 119

Query: 222 ----TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
               T  Y GG+E FV +++  ++ + Q  I  +   D + +++AM+WN GY  +V  F 
Sbjct: 120 VRERTFHYPGGLEDFVRHINHTREAVHQKVIAFEAKSDELEVEVAMQWNTGYTPSVYTFA 179

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G R+ALTR +  Y       K+   ++ GDD REG  +++S+K+ +P
Sbjct: 180 NTINTHEGGTHEEGFRAALTRVVNEYARDKKLLKEKDSNLTGDDIREGLAAIISVKLKEP 239

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL +SE +S V+   N+ L+ W E HP EAK IV K + ++  R AAR+AR+
Sbjct: 240 QFEGQTKTKLGNSEAKSFVQKSTNEHLADWFERHPNEAKTIVTKAVSSAQARIAARKARE 299

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           L RRKG LDI  LPGKL DC   +P++ E+++VEGDSAGGSAK+GR    QAILP+RGKI
Sbjct: 300 LVRRKGALDIGGLPGKLKDCRSTNPEECEIYIVEGDSAGGSAKEGRDSMFQAILPIRGKI 359

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +NVE+AR D++L + E+ +LITALGTGI +D FD+ KLRYHKI++
Sbjct: 360 INVEKARIDRVLKNNEVQSLITALGTGIHED-FDLAKLRYHKIVL 403


>gi|308153102|dbj|BAJ22140.1| DNA gyrase subunit B [Actinosynnema mirum]
          Length = 402

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 176/404 (43%), Positives = 256/404 (63%), Gaps = 16/404 (3%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SY VSGGLHGVG+SVVNALS+ + + +KR+G  +   F      + L   G   ++TGT 
Sbjct: 1   SYAVSGGLHGVGISVVNALSTAVDVEVKRQGFTWNQRFEASKPAHELQR-GVPTSETGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--------------RSPEP 218
           +TF     IF   D+N +T+  RL+E++FLN  + I L D+                 + 
Sbjct: 60  ITFWADPTIFETTDYNIETISRRLQEMAFLNKGLSIVLRDERVAEEGAEEADAEGHVAKV 119

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
           RE    Y GG+E FV +L+  ++ + Q  +  +   D++ +++AM+WN GY  +V  F N
Sbjct: 120 RERVFHYPGGLEDFVRHLNHTREAVHQKVVSFEAKGDDLEVEVAMQWNTGYTPSVYTFAN 179

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALTR +  Y       K+   ++ GDD REG  +++S+K+ +P+
Sbjct: 180 TINTHEGGTHEEGFRAALTRVVNEYARDKKLIKEKDANLTGDDIREGLAAIISVKLKEPQ 239

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +SE +S V+   N+ L+ W E HP EAK I+ K + +S  R AAR+AR+L
Sbjct: 240 FEGQTKTKLGNSEAKSFVQKSTNEHLADWFERHPNEAKTIITKAVSSSQARIAARKAREL 299

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            RRKG LDI  LPGKL DC   +P++ E+++VEGDSAGGSAK+GR    QAILP+RGKI+
Sbjct: 300 VRRKGALDIGGLPGKLKDCRSSNPEECEVYIVEGDSAGGSAKEGRDSMYQAILPIRGKII 359

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           NVE+AR D++L + E+ ++ITA+GTGI  D FD++KLRYHK+++
Sbjct: 360 NVEKARIDRVLKNTEVQSIITAMGTGI-HDEFDVSKLRYHKVVL 402


>gi|308153160|dbj|BAJ22169.1| DNA gyrase subunit B [Mycobacterium phlei]
          Length = 420

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 184/422 (43%), Positives = 252/422 (59%), Gaps = 34/422 (8%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I+R+G  +  ++   +    L   G   N+TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIRRDGYEWFQTYDRSVP-GTLKQ-GEKTNETGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK------------------ 213
            + F P  DIF    F+++T+  RL+E++FLN  + I L D+                  
Sbjct: 60  TIRFWPDPDIFETTTFDFETISRRLQEMAFLNKGLTIELTDERVSAEDVVDEVVSETAEA 119

Query: 214 -------------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                             +     Y GG+  FV +++R K P+  S I  +G  +   ++
Sbjct: 120 PKSAEEKAAESATPQQRVKHRVFHYPGGLVDFVKHINRTKNPIHPSIIDFEGKGEGHEVE 179

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GD
Sbjct: 180 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGD 239

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ LS W E +P EAK +V 
Sbjct: 240 DIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVN 299

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP K EL++VEGDSAGGSAK
Sbjct: 300 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKCELYVVEGDSAGGSAK 359

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI
Sbjct: 360 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKI 418

Query: 501 II 502
           I+
Sbjct: 419 IL 420


>gi|2196846|gb|AAB80840.1| DNA gyrase beta-subunit [Shewanella sp. DLM-7]
          Length = 419

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 228/430 (53%), Positives = 307/430 (71%), Gaps = 20/430 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSG--G------LHGVGVSVVNALSSWLKLRIKREGNIYEM 148
           EVIMT  H+ G  +  +   +G  G      L      ++NALS  L+L I+R+G ++E 
Sbjct: 1   EVIMTVPHSWG--SLNAKPKTGLCGWLDIRTL------LINALSKKLQLTIRRDGKVHEQ 52

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
            + +G+ D P+   G A   TGTE+ F PS   FS  +F+++ L  RLRELSFLNS V I
Sbjct: 53  FYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEQTFSDVEFHFEILAKRLRELSFLNSGVGI 111

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWND 267
            L+D+R  +        +GG  AFV YL+R+K P+ +        RD+ I++++AM+WND
Sbjct: 112 PLVDERDNKNEFSKY--EGGFRAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWND 169

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY EN+ CFTNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG T
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AK  V +++DA+ 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLYEYLLENPADAKFFVGQIVDAAR 289

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+R+N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG   + ++K R   ++IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGVIVYTLDKTRGKYVVIMTDAD 409

Query: 508 VDGAHIRTLL 517
           VDG+HI TLL
Sbjct: 410 VDGSHILTLL 419


>gi|253741316|gb|ACT34977.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 419

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 178/422 (42%), Positives = 252/422 (59%), Gaps = 33/422 (7%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  +Y +SGGLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G+    T
Sbjct: 1   DSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKT 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------- 214
           G+ V F     +F   +++++T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  GSTVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVA 118

Query: 215 ---------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
                            + +  T  Y GG+  FV +++R K  +  S +   G      +
Sbjct: 119 EAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEV 178

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ G
Sbjct: 179 EIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTG 238

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V
Sbjct: 239 DDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVV 298

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSA
Sbjct: 299 NKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSA 358

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           K GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHK
Sbjct: 359 KSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHK 417

Query: 500 II 501
           I+
Sbjct: 418 IV 419


>gi|302122546|gb|ADK92941.1| topoisomerase IV subunit B [Geobacillus subterraneus]
          Length = 396

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 177/401 (44%), Positives = 254/401 (63%), Gaps = 10/401 (2%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN 167
           F Q  YK SGGLHGVG SVVNALS WL + I R+G IY   F N G     L   G   N
Sbjct: 1   FGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFENGGKPVTTLEKIG-TTN 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT + F P   IFS   F+Y+TL  RLRE +FL   ++I L+D+R+         Y+ 
Sbjct: 60  KTGTIIQFKPDPAIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MCEVFHYEN 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GIEAFV+YL+  K  L        G ++ I ++ A +++DGY ENVL F NN+  KDGGT
Sbjct: 118 GIEAFVAYLNEEKDVLHPVA-YFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGT 176

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKE 345
           H +G ++A+TR    Y  +    K+  +++ G D REG ++++S+++P+   +F  QTK 
Sbjct: 177 HEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGADIREGLSAIVSVRIPEHLLQFEGQTKG 236

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKG 403
           KL +SE RS V++ V++ L+ +L+E+P  + +++KK + A   R+AAR+AR+   + +K 
Sbjct: 237 KLGTSEARSAVDAVVSEQLTYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKR 296

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
               A L GKL     R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A
Sbjct: 297 KGKEALLSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKA 356

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           +   +L ++EI T+I A+G G+G D F +  + Y K+IIMT
Sbjct: 357 KLGDILKNEEINTIIHAIGGGVGAD-FSLEDIHYDKVIIMT 396


>gi|20387172|dbj|BAB91286.1| gyrase B [Streptomyces lavenduligriseus]
          Length = 409

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 186/411 (45%), Positives = 263/411 (63%), Gaps = 21/411 (5%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + ++ +G+ +   +  G+   PL V   A  +TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTKVAVEVRTDGHRWTQDYKMGVPTAPL-VKHEATEETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    +IF   +++++TL  R +E++FLN  + I L D+R                
Sbjct: 60  TSVTFWADPEIFETTEYSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGADE 119

Query: 216 -PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHE 271
             E + +T  Y+GGI  FV Y   R    +  + + ++    +  +S+++AM+WN GY E
Sbjct: 120 KAEVKTVTYHYEGGIVDFVKYLNSRKGDAVHPTVVSLEAEDKDKSLSLEVAMQWNSGYSE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S
Sbjct: 180 GVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++E ++ V+  V + L+ WL+ +P+EA  IV+K + A+  R A
Sbjct: 240 VKLSEPQFEGQTKTKLGNTEAKTFVQKAVYEHLNDWLDRNPVEAADIVRKGIQAATARVA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+ARDLTRRKG+L+ ASLPGKLADC   DP K E+F+VEGDSAGGSAK GR+ + QAIL
Sbjct: 300 ARKARDLTRRKGLLETASLPGKLADCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           P+RGKILNVE+AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 PIRGKILNVEKARIDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIIL 409


>gi|126308150|ref|XP_001369978.1| PREDICTED: similar to DNA topoisomerase II (EC 5.99.1.3)
           [Monodelphis domestica]
          Length = 1548

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 135/744 (18%), Positives = 265/744 (35%), Gaps = 75/744 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 35  YQKKTQLEHILLRPDTYIGSVEVVTQQMWVYDEEVGLNYRDVTFVPGLYKIFDEILVNAA 94

Query: 54  DESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D        + I VT++  + + ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 95  DNKQRDPKMNCIKVTIDSENNTISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 154

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +    +++ ++++ +     +       + 
Sbjct: 155 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKKMFKQTWMDNMGKAGEMTLKPFSGED 214

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +   + D    +  R  +++     V++ L   R            
Sbjct: 215 YTCITFQPDLSKFKMTSLDKDMVALMSRRAYDIAGSTKDVKVFLNGNR---------LPV 265

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     +P++I     N   ++ +  ++   + +  F N+I    GG
Sbjct: 266 KGFRSYVDLYVKDKLDETGNPLKIIHEEVNHRWEVCLTMSEKGFQQI-SFVNSIATSKGG 324

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE 
Sbjct: 325 RHVDYVADQIISRLIDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKEN 381

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +         +  +++             + I+  V   +         +    +   + 
Sbjct: 382 MTLQAKNFGSKCELSEKFIKAAI-GCGIVESILNWVKFKAQ---VQLNKKCSAVKHNRIK 437

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   ++     L L EGDSA      G    GR +    + PLRGKILNV 
Sbjct: 438 GIPKLDDANDAGSKNSTDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVR 495

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+
Sbjct: 496 EASHKQIMENAEINNIIKIVGLQYKKNYEDADSLKSLRYGKIMIMTDQDQDGSHIKGLLI 555

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFC 576
            F     PSL+ + FL     P+  ++R K           E++          +++ + 
Sbjct: 556 NFIHHNWPSLLKHCFLEEFITPIVKVSRNKQEMSFYSLPEFEEWKNTTENHKKWKVKYYK 615

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                 SK                 K+++ +  +  I+        +       +     
Sbjct: 616 GLGTSTSKEA---------------KEYFSDMSRHRIQFKYSGPEDDAAISLAFSKKQID 660

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI---F 693
                L    E   +     +    +  K         F+ +   +FS     + I    
Sbjct: 661 DRKEWLTHFMEDRRQRKLLGLPEDYLYGKATKHLTYNDFINKELILFSNSDNERSIPSMV 720

Query: 694 SNRIEENYLTILSLICNGDKIKIT 717
                     + +     DK ++ 
Sbjct: 721 DGLKPGQRKVLFTCFKRNDKREVK 744


>gi|66474545|gb|AAY46842.1| GyrB [Aeromonas veronii]
          Length = 371

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 222/374 (59%), Positives = 282/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPA 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG D ++ +K
Sbjct: 358 LGCGIGHDEYNPDK 371


>gi|320593621|gb|EFX06030.1| DNA topoisomerase 2 [Grosmannia clavigera kw1407]
          Length = 1724

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 132/680 (19%), Positives = 253/680 (37%), Gaps = 61/680 (8%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT----------------------DGES 39
           S    +  Y     Q L  L+ + KRP  YIG                            
Sbjct: 143 SSKTASEMY-----QKLTQLEHIIKRPDTYIGSVEHAEQLMWVYNKATGQMEKRAISFVP 197

Query: 40  GLHHMIYEVLDNAIDE-----SLEGYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGI 93
           GL+ +  E+L NA D      S+     ++ VT++   G  +V +NG+GI  ++H++E +
Sbjct: 198 GLYKIFDEILVNAADNKQRDPSM----SMLKVTVDRAAGEISVENNGKGIAIEMHQKEKV 253

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFI 151
              E++   L  G  ++    +  GG +G G  + N  S+   +  +    G  Y+ ++ 
Sbjct: 254 YIPELLFGHLLTGSNYDDNEKRTVGGRNGYGAKLCNVFSTEFTVECQDSASGKRYKQTWH 313

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT----LQHRLRELSFLNSSVQ 207
           N +         +  +     VTF P  + F + +   D     +  R+ +++ +   V+
Sbjct: 314 NNMSVMDKARITANKSSDFVRVTFKPDFERFGMPNGIDDDLEALMYRRIYDMAGVVDGVK 373

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ-SPIRIQGSRDNISIDLAMRWN 266
           + L  +      +          A     +   + L   + ++ +  + +    +    +
Sbjct: 374 VFLNGEYLKVGFKKYCDMYAKAIAKERDEEVTGEELPPAATVQFEDPKAHKRWQIGFTVS 433

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           DG  + V  F N+I    GGTH++ +   +   + + + K       K +      R   
Sbjct: 434 DGTFQQV-SFVNSIATTSGGTHVNYIADQICNALLADLNKRKKGHSLKLNH----IRNHI 488

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
              ++  + +P F+ QTKE++ +       +  + D     +        II      A 
Sbjct: 489 FIFVNCFIDNPAFTGQTKEQMTTKVSAFGTKCVLTDAFIKKIRSTDAINNIIHFAEKKAD 548

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR--- 443
            +   +   R        L  A+L G       +   +  L L EGDSA G A  GR   
Sbjct: 549 KMMSKSDGNRRSRISNDKLVDANLAG------TKHGHECTLILTEGDSARGLAIAGRAVL 602

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
             +   + PLRGK+LNV  A  D++  ++EI  +   LG    Q   D   LRY  ++IM
Sbjct: 603 DPDRIGVFPLRGKLLNVRDASIDQITKNKEIQNIKQFLGLKHKQVYTDTKSLRYGHLMIM 662

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDY 562
            D D DG+HI+ LL+ F   Q PSL+     +     P+  + +G + +     ++    
Sbjct: 663 ADQDHDGSHIKGLLINFLQVQFPSLLLIPEFFQEFITPVVKVWQGPNPKKPTKSKAFYTI 722

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
              +   +                L +  ++         +   +  +    Q   + +F
Sbjct: 723 PEYEEWKDAHHSEVKRWEHKYLKGLGSSSNE--DAQVYFTNLDAHLKEFETMQTDEAQLF 780

Query: 623 NCESDQEINVSLASKLANRL 642
           +    ++   +    L N +
Sbjct: 781 DLAFSKKKADARKEWLGNFI 800


>gi|66474595|gb|AAY46867.1| GyrB [Aeromonas media]
          Length = 371

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 217/374 (58%), Positives = 283/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL   R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVSFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY+++   +KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDEEDYTKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|68445346|dbj|BAE03174.1| DNA gyrase subunit B [actinobacterium Aac-30]
          Length = 399

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 179/401 (44%), Positives = 264/401 (65%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVGVSVVNALS+ +++ +  +G ++   + +G+ ++ +   G A  DTG
Sbjct: 1   DGGYKVSGGLHGVGVSVVNALSTRVEVEVHTDGFVWNQVYKHGVPESEVCKGGPAE-DTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T   F    DIF    + ++TL  R +E++FLN  + ISL D+R      + E R +   
Sbjct: 60  TSTIFWADPDIFETTVYTFETLSRRFQEMAFLNKGLTISLTDERPEFLDENGEQRSVKYH 119

Query: 225 YKGGIEAFVSYLD-RHKKPLMQSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNNIP 281
            +GGI  FV +++ R  +P+  + I  +G   + ++  ++A++WN  Y E++  F NNI 
Sbjct: 120 AEGGIADFVRHINARKGEPVHPNVIDFEGEDKDRTLAAEIALQWNSQYSESIYTFANNIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH  G R+ALT  I  Y       K+   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THGGGTHEEGFRAALTTLINKYARDQKLLKEKDENLAGEDIREGLTTIVSVKLSEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KL + E ++ V+  V + L  WLEE+P EA+ +++K + AS  R AAR+AR+LTRR
Sbjct: 240 QTKDKLGNPEAKTFVQRLVYEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ +SLPGKL+DC   DP K+E+F+VEGDSAGGSA+ GR    QAILP+RGKILNVE
Sbjct: 300 KGLLESSSLPGKLSDCQSNDPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+ALGTG+  D FDI++LRYHKII+
Sbjct: 360 KARIDKVLQNTEVQALISALGTGV-HDDFDISRLRYHKIIL 399


>gi|23451177|gb|AAN32693.1| DNA gyrase subunit B [Aeromonas sobria]
          Length = 371

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 218/374 (58%), Positives = 282/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGISVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSS-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYEILAKRLRELSFLNSGVSIRLHDER--DGREVHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEHDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|19912131|dbj|BAB88377.1| DNA gyrase subunit B [Cytophaga sp. I-1789]
          Length = 391

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 190/392 (48%), Positives = 262/392 (66%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           VSGGLHGVGVS VNALS  +K+ +  ++G IYE S+  G    P+   G   + TGT V 
Sbjct: 1   VSGGLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DKTGTTVW 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIE 230
           F+P  +IF+  ++ +D + +RLREL+FLN+ + I L D R  + +      T + +GGI+
Sbjct: 60  FMPDDEIFTHHEYVWDRVANRLRELAFLNAGITIILEDLRDVDEQGNPLSETFYSEGGIK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLD  K+ L+   + I+G + NI + +AM +N  + ENV+ + NNI   +GGTH+S
Sbjct: 120 EFVEYLDDSKEKLIDEAVYIEGEKANIPVQVAMSYNTSFSENVVSYVNNINTHEGGTHVS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + +Y +KS    K K  + GDD REG T+V S+K+ +P+F  QTK KL +S
Sbjct: 180 GFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVFSVKVAEPQFEGQTKTKLGNS 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           +    V+S V+D L+ +LEE+P  AK IV+KV+ A+  R AAR+AR++ +RK V+   SL
Sbjct: 240 DAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMVQRKNVMSSTSL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS +D   SEL+LVEGDSAGGSAKQGR RE QAILPLRGKILNVE+A+  K+  
Sbjct: 300 PGKLADCSSKDATISELYLVEGDSAGGSAKQGREREYQAILPLRGKILNVEKAQEHKIYD 359

Query: 471 SQEIGTLITALGTGIGQDSF----DINKLRYH 498
           ++EI  +ITA+G   G+D      D+ KLRYH
Sbjct: 360 NEEIKNMITAMGVRFGKDGDEKALDMEKLRYH 391


>gi|150171015|emb|CAN84558.1| DNA gyrase subunit B [Anderseniella baltica]
          Length = 369

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 244/369 (66%), Positives = 299/369 (81%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALSSWLKL I R G  ++MSF +G+ D PL + G  G+  GTE+TFLPS
Sbjct: 1   GLHGVGVSVVNALSSWLKLDIWRGGKHWQMSFTHGVADAPLAIVGEQGDRKGTEITFLPS 60

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +D F+  +F++ T++HRLREL+FLNS V I++ D R  E + + + Y+GGI AFV YLDR
Sbjct: 61  TDTFTRVEFDFATIEHRLRELAFLNSGVFINVSDNRHVETKSVDLHYEGGIAAFVKYLDR 120

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+P++  PI I   RD+++++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTR
Sbjct: 121 AKQPMLPDPISITTERDDVTVECALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTR 180

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y  +S  +K++K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR +VES
Sbjct: 181 IVNNYANESGIAKREKVSLSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPIVES 240

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V +GLS W EEHP EA+ IV KV +A+  R+AAR+AR+LTRRKG LDIASLPGKLADC 
Sbjct: 241 AVGEGLSTWFEEHPAEARAIVTKVAEAAAAREAARKARELTRRKGALDIASLPGKLADCQ 300

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERARFDKML SQEIGTLI
Sbjct: 301 ERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDKMLGSQEIGTLI 360

Query: 479 TALGTGIGQ 487
           TALG GIG+
Sbjct: 361 TALGAGIGR 369


>gi|22450170|dbj|BAC10602.1| DNA gyrase B subunit [Shewanella marinintestina]
 gi|22450174|dbj|BAC10604.1| DNA gyrase B subunit [Shewanella marinintestina]
          Length = 377

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 223/380 (58%), Positives = 293/380 (77%), Gaps = 4/380 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALSS L++ I+R+G +YE  + +G+ D P+   G A   TGTE+ F P
Sbjct: 1   GGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPITAIGEAT-KTGTEIRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ FS   F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+
Sbjct: 60  SAETFSDVLFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R AL
Sbjct: 118 VNKTPVNKEVFHFIQERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E+   +KK K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 178 TRNLNNYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLAD
Sbjct: 238 EQTMGEQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 CQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTGIGQDSFDINKLR 496
           LITALG GIG+D +D +K R
Sbjct: 358 LITALGCGIGRDEYDPDKTR 377


>gi|158299572|ref|XP_319665.4| AGAP008917-PA [Anopheles gambiae str. PEST]
 gi|157013582|gb|EAA14841.5| AGAP008917-PA [Anopheles gambiae str. PEST]
          Length = 1427

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/744 (18%), Positives = 256/744 (34%), Gaps = 73/744 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 11  YQKKSQLEHILLRPDTYIGSVEMVKEPMWIFDKEANKMVQRDITYVPGLYKIFDEILVNA 70

Query: 53  IDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D          I V +N +  + +V ++G GIP  +HKEE +    +I   L     +N
Sbjct: 71  ADNKQRDPKMSTIKVEINQETNTISVWNDGHGIPVVMHKEEKMYVPTMIFGHLLTSSNYN 130

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGI-LDNPLVVTGSAGN 167
            +  KV+GG +G G  + N  S+   +    K+    ++ ++ + +       +      
Sbjct: 131 DEEEKVTGGRNGYGAKLCNIFSTKFTVETASKQYKKCFKQTWGDNMSKTTEPKIKEDFFG 190

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +  T++TF P    F ++  + D +     R  +++     V + L   R P        
Sbjct: 191 NDYTKITFSPDLSKFKMEKLDDDIVGLLSRRAYDVAASTRGVSVYLNGTRVPVKNFKDYI 250

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
                  F+          ++        R  +++ ++ R         + F N+I    
Sbjct: 251 DL-----FLRDTTDDVGAPVKMCYESVNERWEVAVAISER-----GFQQVSFVNSIATTK 300

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   + +Q+   ++K     K   ++     +      ++  + +P F SQTK
Sbjct: 301 GGRHVDYVSDMIVKQLIEVLKKKN---KGGVTIKPFQVKNHMWVFINCLIVNPTFDSQTK 357

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E +         +  +++     + +       IV+ VL  +  +     A+    +K  
Sbjct: 358 ENMTLQSKSFGSKCALSEKFITAVSKSG-----IVESVLQWAKFKAQTDLAKTSGSKKSK 412

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKILNVE 461
           +          D   R+     L L EGDSA   A  G     R+   + PLRGK+LNV 
Sbjct: 413 IKGIPKLEDANDAGSRNSLNCTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKLLNVR 472

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   ++L + EI  LI  LG    +    ++    LRY K++IMTD D DG+HI+ LL+
Sbjct: 473 EATHKQILENAEINNLIKILGLQYKKKYLTMDDLKTLRYGKVMIMTDQDQDGSHIKGLLI 532

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCD 577
            F     P L+   FL     P+   T+              E++    + S    +   
Sbjct: 533 NFIHTNWPELLRLPFLEEFITPIVKATKKNGEELSFFSLPEFEEWKAETANSHTYNIKYY 592

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                S          + +  +  ++   +      E             ++        
Sbjct: 593 KGLGTS---------TSKEAKEYFQNMERHRILFRYEDTGDDDAIMLAFSKKAIEQRKDW 643

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L   +     +              L  +  + +  +  +    +    S   R     +
Sbjct: 644 LTAHMEECRHRKSVGLQ-----ERYLYTKTTKEISYKDFVNLELVLFSNSDNVRSIPCML 698

Query: 698 EENYLTILSLI----CNGDKIKIT 717
           +        ++       DK ++ 
Sbjct: 699 DGLKPGQRKVLYTCFKRDDKREVK 722


>gi|119226148|dbj|BAF41053.1| DNA gyrase subunit B [Nocardia brasiliensis]
          Length = 419

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 183/422 (43%), Positives = 257/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I R+G  +  S+ + I    L V G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDRDGYHWSQSYKDSIP-GKL-VQGEASKQTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVSESEITDDVVSETAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+E FV +++R K+P+  S +   G      ++
Sbjct: 119 APKHAEADAAAAPVEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GD
Sbjct: 179 VAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV 
Sbjct: 239 DIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQKACNEHLTHWFEANPADAKTIVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI
Sbjct: 359 SGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|225450069|ref|XP_002274267.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1489

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 128/590 (21%), Positives = 237/590 (40%), Gaps = 55/590 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            ++ Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 27  EETYQKKSQLEHILLRPDTYIGSIEKHTQALWVFENNEMVHRSVSYVPGLYKIFDEILVN 86

Query: 52  AIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + V ++++    +V +NG G+P ++H+EEG+   E+I   L  
Sbjct: 87  AADNKQRDPSM----DSVKVVIDVEKNCISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLT 142

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVT 162
              ++    K +GG +G G  + N  S+   +     R    Y+  F N +   +  V+T
Sbjct: 143 SSNYDDDVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSNNMGKKSEPVIT 202

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                +  T+V+F P    F++     D +    + +  +   +  ++  + + +   + 
Sbjct: 203 KCKERENWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGQRIPV- 261

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                    +V+   +         +     + N   ++ +  ++G  + V  F N+I  
Sbjct: 262 ----KSFNDYVNLYLQSAAKSRPESLPRIAEKVNERWEICVSLSEGQFQQV-SFVNSIAT 316

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH+  +    T QI ++V      K    ++     +      ++  + +P F SQ
Sbjct: 317 IKGGTHVDYV----TNQIANFVMSIVNKKNKNANIKAHTVKNHLWVFVNALIDNPAFDSQ 372

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-IVKKVLDASMVRDAARRARDLTRR 401
           TK      E  ++ +S          E     +K  +V+ +L  +  +      +    +
Sbjct: 373 TK------ETLTIRQSSFGSKCELSQEFLKKVSKSGVVESLLSWADYKQNKDLKKTDGTK 426

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
           +  L   +      D   R+ +K  L L EGDSA   A  G S   R +  + PLRGK+L
Sbjct: 427 RQRLTGITKLEDANDAGGRNSEKCTLILTEGDSAKALAMAGISVVGRNHYGVFPLRGKLL 486

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A+  ++L + EI  +   LG   G++   I  LRY  ++IMTD D DG+HI+ LL+
Sbjct: 487 NVRDAQKKQILENAEIQNIKQILGLQQGKEYDSIKSLRYGHLMIMTDQDHDGSHIKGLLI 546

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGI-TRGKSLQYVKDEESLEDYLINQ 566
            F     PSL+      +    P+     R   +         E +  + 
Sbjct: 547 NFIHSFWPSLLKIPSFLVEFITPIVKATHRNGRVLSFYSMPEYESWKESL 596


>gi|4996816|dbj|BAA78453.1| subunit B protein of DNA gyrase [bacterium rM16]
          Length = 277

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 143/280 (51%), Positives = 190/280 (67%), Gaps = 9/280 (3%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGIS 94
             +GLHHM++EV+DNAIDE+L GY D I V ++ D S +V+DNGRGIPT +HK  E G S
Sbjct: 1   DGTGLHHMVFEVVDNAIDEALAGYCDDIVVMIHSDSSISVTDNGRGIPTAIHKDDEFGRS 60

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAE++MT LHAGGKF+  SYKVSGGLHGVGVS VNALS WL+L I R+G  +EM F  G 
Sbjct: 61  AAEIVMTELHAGGKFDHNSYKVSGGLHGVGVSCVNALSEWLRLTIWRQGETHEMEFRRGE 120

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL +TG      GT V FL  ++IF   +++Y+ L  RLRELSFLN+ V++ LID+R
Sbjct: 121 RVQPLGITGPTE-LHGTRVQFLADAEIFEKIEYHYEILAKRLRELSFLNNGVKVRLIDER 179

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----RDNISIDLAMRWNDGYH 270
             +       + GG++ FV Y++R K  L  +   +  +       I +D+AM+WND Y 
Sbjct: 180 QDKE--ENFAFLGGVKGFVEYINRTKTVLHPNVFSVSTNSVVGDSTIGVDVAMQWNDSYT 237

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
           E VLCFTNNIPQ+DGGTHL+GLR+A+TR +  Y+  +  +
Sbjct: 238 ETVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYITDNEMA 277


>gi|19912075|dbj|BAB88349.1| DNA gyrase subunit B [Cytophaga sp. MBIC04669]
          Length = 391

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 183/392 (46%), Positives = 251/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  L   + R+G I++  +  G    P+   G    D GTEVTF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETE-DRGTEVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
            P + IF+    ++Y+TL +R+RELSFLN  V IS+ DKR      E    T F   G++
Sbjct: 60  HPDNTIFTQTIEYSYETLVNRMRELSFLNKGVTISITDKRQKDEKGEYVGETFFSNEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD +++ L+Q  I ++G +++I +++AM +N  Y E    + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGNRESLIQGVIAMEGEKNDIPVEVAMIYNTSYTEIFHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV + V   V++ L+ +LEEHP +AK IV+KV+ A+  R AA +AR++ +RK V+    L
Sbjct: 240 EVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMSGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP+K E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNMYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|297736284|emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 128/590 (21%), Positives = 237/590 (40%), Gaps = 55/590 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            ++ Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 27  EETYQKKSQLEHILLRPDTYIGSIEKHTQALWVFENNEMVHRSVSYVPGLYKIFDEILVN 86

Query: 52  AIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + V ++++    +V +NG G+P ++H+EEG+   E+I   L  
Sbjct: 87  AADNKQRDPSM----DSVKVVIDVEKNCISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLT 142

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVT 162
              ++    K +GG +G G  + N  S+   +     R    Y+  F N +   +  V+T
Sbjct: 143 SSNYDDDVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSNNMGKKSEPVIT 202

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                +  T+V+F P    F++     D +    + +  +   +  ++  + + +   + 
Sbjct: 203 KCKERENWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGQRIPV- 261

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                    +V+   +         +     + N   ++ +  ++G  + V  F N+I  
Sbjct: 262 ----KSFNDYVNLYLQSAAKSRPESLPRIAEKVNERWEICVSLSEGQFQQV-SFVNSIAT 316

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH+  +    T QI ++V      K    ++     +      ++  + +P F SQ
Sbjct: 317 IKGGTHVDYV----TNQIANFVMSIVNKKNKNANIKAHTVKNHLWVFVNALIDNPAFDSQ 372

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-IVKKVLDASMVRDAARRARDLTRR 401
           TK      E  ++ +S          E     +K  +V+ +L  +  +      +    +
Sbjct: 373 TK------ETLTIRQSSFGSKCELSQEFLKKVSKSGVVESLLSWADYKQNKDLKKTDGTK 426

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKIL 458
           +  L   +      D   R+ +K  L L EGDSA   A  G S   R +  + PLRGK+L
Sbjct: 427 RQRLTGITKLEDANDAGGRNSEKCTLILTEGDSAKALAMAGISVVGRNHYGVFPLRGKLL 486

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A+  ++L + EI  +   LG   G++   I  LRY  ++IMTD D DG+HI+ LL+
Sbjct: 487 NVRDAQKKQILENAEIQNIKQILGLQQGKEYDSIKSLRYGHLMIMTDQDHDGSHIKGLLI 546

Query: 519 TFFFRQMPSLIHNGFLYI-IKPPLYGI-TRGKSLQYVKDEESLEDYLINQ 566
            F     PSL+      +    P+     R   +         E +  + 
Sbjct: 547 NFIHSFWPSLLKIPSFLVEFITPIVKATHRNGRVLSFYSMPEYESWKESL 596


>gi|19912043|dbj|BAB88333.1| DNA gyrase subunit B [Cytophaga sp. I-2031]
 gi|19912045|dbj|BAB88334.1| DNA gyrase subunit B [Cytophaga sp. I-2034]
          Length = 391

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 185/392 (47%), Positives = 255/392 (65%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ LK  + R+G ++E  +  G    P+   G   ++TGT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVHRDGKVWEQEYERGKSLYPVKSVGET-DETGTIVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIE 230
           +P   IF+    ++Y+TL +R+RELSFLN  V IS+ DKR      E    T +   G+ 
Sbjct: 60  IPDDSIFTQTTEYSYETLANRMRELSFLNKGVTISITDKRVKDKEGEYLSETFYSDAGLS 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +LD  ++PL+Q  I ++G ++ I +++AM +N  Y EN+  + NNI   +GGTHLS
Sbjct: 120 EFVKFLDGTREPLIQGVIAMEGEKNGIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S   +K K  V GDD REG T+++S+K+ +P    QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADSSGMLEKLKFEVQGDDFREGLTAIVSVKVAEPSIEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEEHP +AK+IV+KV+ A+  R AA +AR++ +RK V+ I  L
Sbjct: 240 EVSSAVSQAVSEMLTDYLEEHPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMSIGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP + E+FLVEGDSAGG+AK GR R+ QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPAQCEVFLVEGDSAGGTAKMGRDRKFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|23451179|gb|AAN32694.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 371

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 218/374 (58%), Positives = 282/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WN  Y E V  FTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNHAYQEGVYWFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|22450176|dbj|BAC10605.1| DNA gyrase B subunit [Shewanella schlegeliana]
 gi|22450178|dbj|BAC10606.1| DNA gyrase B subunit [Shewanella schlegeliana]
          Length = 377

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 221/380 (58%), Positives = 294/380 (77%), Gaps = 4/380 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALSS L++ I+R+G +YE  + +G+ D P+   G A   TGTE+ F P
Sbjct: 1   GGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPITAIGEAT-KTGTEIRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ FS   F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+
Sbjct: 60  SAETFSDVLFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R AL
Sbjct: 118 VNKTPVNKEVFHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E+   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 178 TRNLNNYMEREGFNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLAD
Sbjct: 238 EQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 CQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 357

Query: 477 LITALGTGIGQDSFDINKLR 496
           LITALG GIG+D ++ +K R
Sbjct: 358 LITALGCGIGRDEYNPDKTR 377


>gi|4996792|dbj|BAA78441.1| subunit B protein of DNA gyrase [bacterium rM2]
          Length = 321

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 159/324 (49%), Positives = 206/324 (63%), Gaps = 32/324 (9%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEE 91
             +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E 
Sbjct: 2   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EP 60

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151
             SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  YE+ F 
Sbjct: 61  KRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFS 120

Query: 152 NGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRE 198
            G +             +P+ V G + +  GT+V FLP  +IF     F Y+ L  RLRE
Sbjct: 121 RGHVQNRLIEVVDGAEVSPMRVVGES-DKRGTKVHFLPDQEIFKENFDFRYEILAKRLRE 179

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD--- 255
           LSFLN+ V+I L D+R  +         GG++ FV ++   KK L  +     GSR    
Sbjct: 180 LSFLNNGVRIRLKDERDGKE--DDFSGTGGVKGFVEFIIGTKKVLHPTAFHAMGSRPAET 237

Query: 256 -------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                   I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++ 
Sbjct: 238 YGGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQND 297

Query: 309 GSKKDKRSVIGDDCREGFTSVLSI 332
            +KK K  V GDD REG  +VLS+
Sbjct: 298 LAKKAKVEVTGDDMREGLCAVLSV 321


>gi|19912123|dbj|BAB88373.1| DNA gyrase subunit B [Cytophaga sp. T-326]
          Length = 391

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 190/392 (48%), Positives = 263/392 (67%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           VSGGLHGVGVS VNALS  +K+ +  ++G IYE S+  G    P+   G   + TGT V 
Sbjct: 1   VSGGLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DKTGTTVW 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIE 230
           F+P  +IF+  ++ +D + +RLREL+FLN+ + I L D R  + +      T + +GGI+
Sbjct: 60  FMPDDEIFTHHEYVWDRVANRLRELAFLNAGITIVLEDLRDVDEQGNPLSETFYSEGGIK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLD  K+ L+   + I+G + NI + +AM +N  + ENV+ + NNI   +GGTH+S
Sbjct: 120 EFVEYLDDSKEKLIDEAVYIEGEKANIPVQVAMSYNTSFSENVVSYVNNINTHEGGTHVS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + +Y +KS    K K  + GDD REG T+V+S+K+ +P+F  QTK KL +S
Sbjct: 180 GFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNS 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           +    V+S V+D L+ +LEE+P  AK IV+KV+ A+  R AAR+AR++ +RK V+   SL
Sbjct: 240 DAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMVQRKNVMSSTSL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS +D   SEL+LVEGDSAGGSAKQGR RE QAILPLRGKILNVE+A+  K+  
Sbjct: 300 PGKLADCSSKDATISELYLVEGDSAGGSAKQGREREYQAILPLRGKILNVEKAQEHKIYD 359

Query: 471 SQEIGTLITALGTGIGQDSF----DINKLRYH 498
           ++EI  +ITA+G   G+D      D+ KLRYH
Sbjct: 360 NEEIKNMITAMGVRFGKDGDEKALDMEKLRYH 391


>gi|19909531|dbj|BAB86961.1| DNA gyrase subunit B [Thiocapsa rosea]
          Length = 376

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 218/379 (57%), Positives = 283/379 (74%), Gaps = 3/379 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L L+I R G +Y+  +  G    PL + G   + TGTE+ 
Sbjct: 1   KVSGGLHGVGVSVVNALSDRLFLKISRGGRLYQQEYHLGEPQYPLKLVGDT-DATGTEIR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS   F+   F+YD L  RLRELSFL S V+I L +K +   R+    Y+GGI AFV 
Sbjct: 60  FYPSDQTFTHIQFHYDILAKRLRELSFLISGVRIELFEKATG--RKDIFQYQGGIRAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+++K+P+  S I     R +++++LA++WN+GY E + C+TN IPQKDGGTHL+GLR+
Sbjct: 118 HLNQNKEPIHPSVIHFTAERQSVTVELAIQWNNGYQETIFCYTNTIPQKDGGTHLAGLRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR +  Y+E+    +  K   +GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 GLTRTLNGYIEREGLDRNQKIRPVGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKA 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VES V + L+ +LEE P EAK I  K+L+A+  R+AAR+AR+ TRRKGVLD+A LPGKL
Sbjct: 238 IVESLVVEQLNIFLEEQPAEAKAIANKMLEAARAREAARKAREKTRRKGVLDVAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+
Sbjct: 298 ADCQEKDPANSELYLVEGDSAGGSAKQGRDRAFQAILPLKGKILNVEKARFDKMLSSAEV 357

Query: 475 GTLITALGTGIGQDSFDIN 493
           GTLITALG GIG++ ++ +
Sbjct: 358 GTLITALGCGIGREEYNPD 376


>gi|19912127|dbj|BAB88375.1| DNA gyrase subunit B [Cytophaga sp. I-976]
 gi|19912129|dbj|BAB88376.1| DNA gyrase subunit B [Cytophaga sp. I-1787]
          Length = 391

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 190/392 (48%), Positives = 263/392 (67%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           VSGGLHGVGVS VNALS  +K+ +  ++G IYE S+  G    P+   G   + TGT V 
Sbjct: 1   VSGGLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DKTGTTVW 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIE 230
           F+P  +IF+  ++ +D + +RLREL+FLN+ + I L D R  + +      T + +GGI+
Sbjct: 60  FMPDDEIFTHHEYVWDRVANRLRELAFLNAGITIILEDLRDVDEQGNPLSETFYSEGGIK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLD  K+ L+   + I+G + NI + +AM +N  + ENV+ + NNI   +GGTH+S
Sbjct: 120 EFVEYLDDSKEKLIDEAVYIEGEKANIPVQVAMSYNTSFSENVVSYVNNINTHEGGTHVS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + +Y +KS    K K  + GDD REG T+V+S+K+ +P+F  QTK KL +S
Sbjct: 180 GFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNS 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           +    V+S V+D L+ +LEE+P  AK IV+KV+ A+  R AAR+AR++ +RK V+   SL
Sbjct: 240 DAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMVQRKNVMSSTSL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS +D   SEL+LVEGDSAGGSAKQGR RE QAILPLRGKILNVE+A+  K+  
Sbjct: 300 PGKLADCSSKDATISELYLVEGDSAGGSAKQGREREYQAILPLRGKILNVEKAQEHKIYD 359

Query: 471 SQEIGTLITALGTGIGQDSF----DINKLRYH 498
           ++EI  +ITA+G   G+D      D+ KLRYH
Sbjct: 360 NEEIKNMITAMGVRFGKDGDEKALDMEKLRYH 391


>gi|20387120|dbj|BAB91260.1| gyrase B [Streptomyces aspergilloides]
 gi|20387188|dbj|BAB91294.1| gyrase B [Streptomyces morookaensis]
 gi|308152545|dbj|BAJ22251.1| DNA gyrase subunit B [Streptomyces aspergilloides]
          Length = 399

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 186/401 (46%), Positives = 261/401 (65%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +KR+G  +   +  G    PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKRDGFRWTQDYKLGAPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPDHVDEEGKPLNVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV+Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVTYLNSRKGELVHPTVISFEAEDKERMLSLEVAMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + EI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNTEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|190409077|gb|EDV12342.1| DNA topoisomerase 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 1428

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 143/738 (19%), Positives = 264/738 (35%), Gaps = 79/738 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 1   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 57

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 58  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 117

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 118 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 176

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++     + + 
Sbjct: 177 MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVY 236

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWND 267
           L  K                         + +          I   R N   ++A   +D
Sbjct: 237 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINNRWEVAFAVSD 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 297 ISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMF 350

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++ + + 
Sbjct: 351 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIAD 405

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
             +     +    RK  +              ++  K  L L EGDSA      G A  G
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVG 465

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 466 RD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 523

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  ++  K  +      ++ D
Sbjct: 524 MTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 583

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +        +           L   +                +         I   
Sbjct: 584 YEKWREEESHKFTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHS 629

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
                   I+++ + K A+       + E            ++    + +     +    
Sbjct: 630 LQGNDKDYIDLAFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKEL 680

Query: 682 IFSFGSKYKRIFSNRIEE 699
           I    +   R   N ++ 
Sbjct: 681 ILFSLADNIRSIPNVLDG 698


>gi|86169563|gb|ABC87021.1| DNA gyrase subunit B [Leuconostoc gelidum KCTC 3527]
          Length = 393

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 181/394 (45%), Positives = 258/394 (65%), Gaps = 3/394 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDT 169
              YKVSGGLHGVG SVVNALS+ L +R+ R+  +Y M F  G ++  +V        + 
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTNLDVRVIRDNQVYYMDFKIGRVNTSIVKLDEEPTINR 60

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F P SDIF     FNY+TL  R+REL+FLN  ++IS+ D R   P   +  ++GG
Sbjct: 61  GTIVHFNPDSDIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRLETPVTESFHFEGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ +V YL+  K  +   P+ ++G  + I ++ A+++     +++  F NNI   +GGTH
Sbjct: 121 IKEYVGYLNSEKTVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFANNINTYEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ALTR I  Y  K+   K +  S+ G+D REG T+++SIK PDP+F  QTK KL 
Sbjct: 181 ETGFKTALTRVINDYGRKNGQLKDNAESLTGEDVREGVTAIVSIKHPDPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +S+ R   +   ++  S ++ E+P+ AK IV K + A   R AA+RAR++TR++  L+I 
Sbjct: 241 NSDARQATDRMFSETFSRFMMENPIVAKQIVDKGILAQKARLAAKRAREMTRKQSGLEIG 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLAD +  DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNVE+A  D++
Sbjct: 301 NLPGKLADNTSNDPALSELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVEKATLDRV 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L ++EI +L TA+GTG G D F++ K  YHK+II
Sbjct: 361 LGNEEIRSLFTAMGTGFG-DDFNVEKANYHKVII 393


>gi|3021648|dbj|BAA25344.1| DNA gyrase B subunit [Pseudomonas chlororaphis]
          Length = 381

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 217/384 (56%), Positives = 289/384 (75%), Gaps = 3/384 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+ CFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQREDGIGVEIALQWNDSFNENLQCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD  EG T+++S+K+PDP+FSSQTK+KLVSSEV++  E
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAGEGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAFE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +    S +L E+P EAK++V K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLADC
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 QEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTL 357

Query: 478 ITALGTGIGQDSFDINKLRYHKII 501
           ITALG GIG++ ++I+KLRYH II
Sbjct: 358 ITALGCGIGREEYNIDKLRYHNII 381


>gi|28974181|gb|AAO61459.1| gyrase B subunit [Bacillus safensis]
          Length = 375

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 185/377 (49%), Positives = 261/377 (69%), Gaps = 3/377 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L + + R+G I+   F  G+    L V G   + TGT   F+P  +IF+  
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTET 59

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + 
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVH 119

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + P+ I+G +D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y 
Sbjct: 120 EEPVYIEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYA 179

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L
Sbjct: 180 RKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEAL 239

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P  AK IV+K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  
Sbjct: 240 EKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSI 299

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 300 SELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 359

Query: 485 IGQDSFDINKLRYHKII 501
           IG+D F + K RYHKI+
Sbjct: 360 IGED-FTLEKARYHKIV 375


>gi|38453803|dbj|BAD02202.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1086

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 140/682 (20%), Positives = 247/682 (36%), Gaps = 49/682 (7%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEHIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +          +++++   +          +  D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKKFKLTWTKNMSTMGKAKITESKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T+VTF P    F +   + D    ++ R+ +++       + L   R P           
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCG-TTVKLNGTRIPVKSFKKYMEMY 239

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                 +      +        I     +   ++    +DG  + V  F N+I    GGT
Sbjct: 240 TK----AIKTERGEDPTSDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGT 294

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++ +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L
Sbjct: 295 HVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +   +   +  V+D     + +  +   I+      A  +       R        L  
Sbjct: 352 TTRSSQFGSKCIVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTD 411

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERAR 464
           A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV  A 
Sbjct: 412 ANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDAS 465

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +    
Sbjct: 466 VDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVA 525

Query: 525 MPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            P+L+   GFL     P+  + +G        +         +            K    
Sbjct: 526 FPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKKYYK 585

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                +  D  +    L +     H     E  +I   F+ +   E       +      
Sbjct: 586 GLGTSSTEDAQVYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTY 644

Query: 644 FIAEKSEKSWHGSINNSDILVK 665
                 + ++   IN   IL  
Sbjct: 645 LDHSMDQITYTDFINKELILFS 666


>gi|148470300|gb|ABQ66097.1| gyrase b [uncultured bacterium]
          Length = 381

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 219/381 (57%), Positives = 278/381 (72%), Gaps = 3/381 (0%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
           WLKL I R+G  + M F  G    PL V G +    GTE+ FLPS   F   +F+YD L 
Sbjct: 1   WLKLTIYRDGKRHFMEFREGDAVAPLAVVGDSP-KRGTEIHFLPSPLTFGTIEFHYDILA 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLRELSFLN+ V I L D R  +       + GG+  FV YL+R +  L  +     G 
Sbjct: 60  RRLRELSFLNNGVSILLKDLRHGQE--ENFSFNGGVRGFVEYLNRTRTVLHPTVFHSVGE 117

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           ++ I++++AM+WN+ Y ENVL FTNNIPQ+DGGTHL+ LR+A+TR +  ++E++  ++K 
Sbjct: 118 KEGITVEVAMQWNESYQENVLSFTNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKA 177

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K    GDD REG T VLS+K+PDP+FSSQTKEKLVSSEVR  VE  V+D + ++L E P 
Sbjct: 178 KVETTGDDMREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPA 237

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EA+IIV K+++A+  R+AAR+AR+LTRRKG LD   LPGKLADC E+DP + E++LVEGD
Sbjct: 238 EARIIVGKIIEAARAREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGD 297

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAKQGR R  QAILPL+GKILNVERARFDK++SSQEI TLITALGTGIG+D +   
Sbjct: 298 SAGGSAKQGRDRRFQAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPE 357

Query: 494 KLRYHKIIIMTDADVDGAHIR 514
           K+RYH+IIIMTDADVDG+HIR
Sbjct: 358 KVRYHRIIIMTDADVDGSHIR 378


>gi|166154003|ref|YP_001654121.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 434/Bu]
 gi|166154878|ref|YP_001653133.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335202|ref|ZP_07223446.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis L2tet1]
 gi|165929991|emb|CAP03474.1| DNA gyrase subunit B [Chlamydia trachomatis 434/Bu]
 gi|165930866|emb|CAP06428.1| DNA gyrase subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 605

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 159/608 (26%), Positives = 266/608 (43%), Gaps = 53/608 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
           + ++Y   SI  L  LD ++ R  MYIG     S    G++ +  EV+DNAIDE + GY 
Sbjct: 3   KKTAYSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGG 119
             I +T +     ++ D GRGIP             VI     ++ G K+ Q  +  S G
Sbjct: 63  HTIHITGDA-HELSIRDEGRGIPLGK----------VIDCVSKINTGAKYTQDVFHFSVG 111

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVG+  VNALS    +R  R     + SF  GIL +     G+  +  GTEV F P  
Sbjct: 112 LNGVGLKAVNALSQHFSVRSVRNKKFLKASFSKGILLH--TEQGATQDPDGTEVVFSPDH 169

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           ++F    F  + L+ ++R+ ++L+  + I    +R             G+        + 
Sbjct: 170 ELFENFSFQVEFLKKKIRQYTYLHPGLTIIYNGERIVS--------TRGLLDLFEEEVQT 221

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
                    +         +       +   E    F N     DGGTHL   +  + + 
Sbjct: 222 PLLYSPITFQYSD------LAFLFSHTETSSEQYFSFVNGQETTDGGTHLVAFKEGIVKG 275

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  +  K+             D REG    ++IK+  P F SQTK KL ++ +R+ +   
Sbjct: 276 VNEFFGKN---------FSSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAKR 326

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRRKGVLDIASLPGKLADCS 418
           V + + + L+++P  A+ I +K+      R  A    ++L  ++  L       +     
Sbjct: 327 VKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   K S +F+ EG+SA  S    R+   QA+  LRGK +NV  ++ + +  + E+
Sbjct: 387 LTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L TALG         +  LRY+++I+ TDADVDG HIR L++TFF +    L+ +  L
Sbjct: 447 FYLATALGL----HKDSLQNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHL 502

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFID 592
           +I++ PL+ +    +  Y   EE     + +    E           G IS  + ++FI 
Sbjct: 503 FILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKKESSLEITRFKGLGEISPKEFKSFIG 562

Query: 593 DALKIDKL 600
             +++  +
Sbjct: 563 ADMRLTPV 570



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 37/126 (29%)

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGEMNASQ-- 749
           SN +      +  +               L TI  IG+K   + + R+KGLGE++  +  
Sbjct: 499 SNHLFILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKKESSLEITRFKGLGEISPKEFK 558

Query: 750 -------------LWET-TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
                        L +T TL+    +LL+            F   MG   + R+ FI EN
Sbjct: 559 SFIGADMRLTPVSLPDTETLD----TLLQ------------FY--MGKNTKERKLFIIEN 600

Query: 796 SLPSAL 801
            L + L
Sbjct: 601 -LVTNL 605


>gi|66474555|gb|AAY46847.1| GyrB [Aeromonas sp. ABJ]
          Length = 371

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 223/374 (59%), Positives = 285/374 (76%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ +        +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHRKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|56675194|emb|CAI34899.1| DNA gyrase subunit B [Aeromonas sp. LMG 17321]
          Length = 371

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 227/374 (60%), Positives = 288/374 (77%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+R+G++YE ++  G    PL   G A   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL++ K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSILLADER--DGREVHFCYEGGIKAFVEYLNQSK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q        +D I +++AM+WNDGY E V CFTNNIPQ+DGGTHL+G R+ALTR +
Sbjct: 118 TPIHQKVFHFSADQDGIGVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLAGFRAALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKTSASGDDVREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L+ +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 238 ADKLADFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|19880943|gb|AAM00584.1|AF458980_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 143/738 (19%), Positives = 264/738 (35%), Gaps = 79/738 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 1   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 57

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 58  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 117

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 118 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 176

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++     + + 
Sbjct: 177 MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVY 236

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWND 267
           L  K                         + +          I   R N   ++A   +D
Sbjct: 237 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINNRWEVAFAVSD 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 297 ISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMF 350

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++ + + 
Sbjct: 351 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIAD 405

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
             +     +    RK  +              ++  K  L L EGDSA      G A  G
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVG 465

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 466 RD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 523

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  ++  K  +      ++ D
Sbjct: 524 MTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 583

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +        +           L   +                +         I   
Sbjct: 584 YEKWREEESHKFTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHS 629

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
                   I+++ + K A+       + E            ++    + +     +    
Sbjct: 630 LQGNDKDYIDLAFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKEL 680

Query: 682 IFSFGSKYKRIFSNRIEE 699
           I    +   R   N ++ 
Sbjct: 681 ILFSLADNIRSIPNVLDG 698


>gi|38453801|dbj|BAD02201.1| DNA topoisomerase II [Arthroderma incurvatum]
          Length = 1086

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 141/682 (20%), Positives = 246/682 (36%), Gaps = 49/682 (7%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEHIYIPELIFGHLLTSSNYNDL 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +          + +++ N +             D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKKFRLTWTNNMSTMGKAKITECKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T+VTF P    F +   + D    ++ R+ +++       + L   R P           
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCG-TTVKLNGTRIPVKSFKKYMEMY 239

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                 +      +        I     +   ++    +DG  + V  F N+I    GGT
Sbjct: 240 TK----AIKTERGEDPTSDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGT 294

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++ +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L
Sbjct: 295 HVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +   +   +  V+D     + +  +   I+      A  +       R        L  
Sbjct: 352 TTRSSQFGSKCIVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTD 411

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERAR 464
           A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV  A 
Sbjct: 412 ANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDAS 465

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +    
Sbjct: 466 VDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVA 525

Query: 525 MPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            P+L+   GFL     P+  + +G        +         +            K    
Sbjct: 526 FPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKESHAHDKKWQKKYYK 585

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                +  D  +    L +     H     E  +I   F+ +   E       +      
Sbjct: 586 GLGTSSTEDAQVYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTY 644

Query: 644 FIAEKSEKSWHGSINNSDILVK 665
                 + ++   IN   IL  
Sbjct: 645 LDHSMDQITYTDFINKELILFS 666


>gi|194761210|ref|XP_001962822.1| GF15632 [Drosophila ananassae]
 gi|190616519|gb|EDV32043.1| GF15632 [Drosophila ananassae]
          Length = 1456

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 138/755 (18%), Positives = 269/755 (35%), Gaps = 69/755 (9%)

Query: 3   DNIQNSSYDADSI----QILKGLDAVKKRPSMYIGDTDGES------------------- 39
           +N   +S  A SI    Q    L+ +  RP  YIG  +                      
Sbjct: 2   ENGSKASGGAMSIEQMYQKKSQLEHILLRPDSYIGSVEYTKELMWVYDFEKNRMVQRELS 61

Query: 40  ---GLHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGIS 94
              GL+ +  E+L NA D        + I + ++ +    ++ +NG+GIP  +HKE+ + 
Sbjct: 62  FVPGLYKIFDEILVNAADNKQRDKSMNTIKIDIDPERNVVSIWNNGQGIPVTMHKEQKMY 121

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLR--IKREGNIYEMSFIN 152
              +I   L     +N    KV+GG +G G  + N  S+   +    K+    ++ ++ N
Sbjct: 122 VPTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATKQYKKSFKQTWGN 181

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
            +                T +TF P    F ++    D +    R    + +S +   + 
Sbjct: 182 NMAKASDPTIKDFNGSDFTRITFSPDLAKFKMESLEEDIVALMSRRAFDVAASTKGVAVF 241

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               +              ++    +++      PI+I     N   ++A   +D   + 
Sbjct: 242 LNGTKLTVKNFK------DYIDLHIKNQDDDAGQPIKIVHEVANERWEVACCPSDRGFQQ 295

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N+I    GG H+  +  ++ +Q+   ++K     K   ++     R      ++ 
Sbjct: 296 V-SFVNSIATTKGGRHVDHVVDSVIKQLIEVLKKKN---KGGINIKPFQVRNHLWIFVNC 351

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
            + +P F SQTKE +         +  +++   + + +       IV+ VL  +  +   
Sbjct: 352 LIENPTFDSQTKENMTLQAKSFGSKCALSEKFISNMSKSG-----IVESVLAWAKFKAQN 406

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQA 449
             A+   R+   +          +   ++     L L EGDSA   A  G     R    
Sbjct: 407 DIAKTGGRKSSKIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRNFYG 466

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDA 506
           + PLRGK+LNV  A F ++  + EI  L   +G    +     +    LRY K++IMTD 
Sbjct: 467 VFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQ 526

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D DG+HI+ LL+ F     P L+   FL     P+   T+             E++ I+ 
Sbjct: 527 DQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEEISFYSLPEFEEWKIDT 586

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
                  +        S          + +  +  +D   +      + +V         
Sbjct: 587 PNHHTYNIKYYKGLGTS---------TSKEAKEYFQDMERHRILFKYDGSVDDESIVMAF 637

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
            ++   S    L N ++ +  + E            L  +  + +     +    +    
Sbjct: 638 SRKHIESRKVWLTNHMDEVKRRKELGL-----PERYLYTKGTKHITYADFINLELVLFSN 692

Query: 687 SKYKRIFSNRIEENYLTILSLI----CNGDKIKIT 717
           +  +R   + ++        ++       DK ++ 
Sbjct: 693 ADNERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 727


>gi|66474589|gb|AAY46864.1| GyrB [Aeromonas sp. 17m]
          Length = 371

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 221/374 (59%), Positives = 283/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLV SEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVCSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLVENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|19880901|gb|AAM00548.1|AF458974_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 143/738 (19%), Positives = 264/738 (35%), Gaps = 79/738 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 1   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 57

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 58  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 117

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 118 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 176

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++     + + 
Sbjct: 177 MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVY 236

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWND 267
           L  K                         + +          I   R N   ++A   +D
Sbjct: 237 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINNRWEVAFAVSD 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 297 ISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMF 350

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++ + + 
Sbjct: 351 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIAD 405

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
             +     +    RK  +              ++  K  L L EGDSA      G A  G
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVG 465

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 466 RD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 523

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  ++  K  +      ++ D
Sbjct: 524 MTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 583

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +        +           L   +                +         I   
Sbjct: 584 YEKWREEESHKFTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHS 629

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
                   I+++ + K A+       + E            ++    + +     +    
Sbjct: 630 LQGNDKDYIDLAFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKEL 680

Query: 682 IFSFGSKYKRIFSNRIEE 699
           I    +   R   N ++ 
Sbjct: 681 ILFSLADNIRSIPNVLDG 698


>gi|308153104|dbj|BAJ22141.1| DNA gyrase subunit B [Amycolatopsis orientalis]
          Length = 402

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 179/405 (44%), Positives = 254/405 (62%), Gaps = 16/405 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVGVSVVNALS+ L   +K  G  +   + + I    L   G A  DTG
Sbjct: 1   SDSYAVSGGLHGVGVSVVNALSTKLIAEVKYGGRSWRQVYTDQIP-GELEDLGPAE-DTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T +TF     IF    +N++T+  RL+E++FLN  + +SL D+R  +             
Sbjct: 59  TTITFWADGGIFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEEDASGQAAR 118

Query: 222 ----TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
               T  Y GG+E FV +++  K P+  S I  +     + +++AM+WN+G+  +V  F 
Sbjct: 119 VKEKTYCYPGGLEDFVKHINGSKDPIHSSVISFEAKGTGLEVEVAMQWNNGFTPSVYTFA 178

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G R+ALTR + +Y  +    K+   ++ GDD REG  +++SIK+ +P
Sbjct: 179 NTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAAIVSIKLSEP 238

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL +SE ++ V+   N+ L+ W E +P E+K I+ K + ++  R AAR+ARD
Sbjct: 239 QFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPAESKTIINKSISSAHARMAARKARD 298

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           L RRKG L+I  LPGKL DC   +P + EL++VEGDSAGGSAK+GR    QAILP+RGKI
Sbjct: 299 LVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKI 358

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +NVE+AR D++L + E+ +LITALGTGI  D FD+ KLRYHKI++
Sbjct: 359 INVEKARIDRVLKNTEVQSLITALGTGI-HDEFDLEKLRYHKIVL 402


>gi|19880908|gb|AAM00554.1|AF458975_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880915|gb|AAM00560.1|AF458976_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880922|gb|AAM00566.1|AF458977_3 TOP2 [Saccharomyces cerevisiae]
 gi|71064112|gb|AAZ22520.1| Top2p [Saccharomyces cerevisiae]
 gi|151944446|gb|EDN62724.1| topoisomerase II [Saccharomyces cerevisiae YJM789]
          Length = 1428

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 143/738 (19%), Positives = 264/738 (35%), Gaps = 79/738 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 1   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 57

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 58  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 117

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 118 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 176

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++     + + 
Sbjct: 177 MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVY 236

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWND 267
           L  K                         + +          I   R N   ++A   +D
Sbjct: 237 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINNRWEVAFAVSD 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 297 ISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMF 350

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++ + + 
Sbjct: 351 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIAD 405

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
             +     +    RK  +              ++  K  L L EGDSA      G A  G
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVG 465

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 466 RD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 523

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  ++  K  +      ++ D
Sbjct: 524 MTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 583

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +        +           L   +                +         I   
Sbjct: 584 YEKWREEESHKFTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHS 629

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
                   I+++ + K A+       + E            ++    + +     +    
Sbjct: 630 LQGNDKDYIDLAFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKEL 680

Query: 682 IFSFGSKYKRIFSNRIEE 699
           I    +   R   N ++ 
Sbjct: 681 ILFSLADNIRSIPNVLDG 698


>gi|323388480|gb|ADX60529.1| topoisomerase IV subunit B [Geobacillus sp. NTU 03]
          Length = 396

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 177/401 (44%), Positives = 255/401 (63%), Gaps = 10/401 (2%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN 167
           F Q  YK SGGLHGVG SVVNALS WL + I R+G IY   F + G     L   G   N
Sbjct: 1   FGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEEIG-TTN 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT + F P   IFS   F+Y+TL  RLRE +FL   ++I L+D+R+         Y+ 
Sbjct: 60  KTGTIIQFKPDPTIFSTTVFDYETLSVRLRESAFLLKGLKIELVDERTG--MREVFHYEN 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GIEAFV+YL+  K  L    +   G ++ I ++ A +++DGY ENVL F NN+  KDGGT
Sbjct: 118 GIEAFVAYLNEEKDVLHP-VVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGT 176

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKE 345
           H +G ++A+TR    Y  +    K+  +++ G D REG ++V+S+++P+   +F  QTK 
Sbjct: 177 HEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKG 236

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKG 403
           KL +SE RS V++ V++ L  +L+E+P  + +++KK + A   R+AAR+AR+   + +K 
Sbjct: 237 KLGTSEARSAVDAVVSEQLMYFLQENPDASAMLIKKAIRAYQAREAARKAREEARSGKKR 296

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
               A L GKL     R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A
Sbjct: 297 KGKEALLSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKA 356

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           +   +L ++EI T+I A+G G+G D F ++ + Y K+IIMT
Sbjct: 357 KLGDILKNEEINTIIHAIGGGVGAD-FSLDDVNYDKVIIMT 396


>gi|255507267|ref|ZP_05382906.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis D(s)2923]
          Length = 605

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 159/608 (26%), Positives = 266/608 (43%), Gaps = 53/608 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
           + ++Y   SI  L  LD ++ R  MYIG     S    G++ +  EV+DNAIDE + GY 
Sbjct: 3   KKTAYSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGG 119
             I +T +     ++ D GRGIP             VI     ++ G K+ Q  +  S G
Sbjct: 63  HTIHITGDA-HELSIRDEGRGIPLGK----------VIDCVSKINTGAKYTQDVFHFSVG 111

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVG+  VNALS    +R  R     + SF  GIL +     G+  +  GTEV F P  
Sbjct: 112 LNGVGLKAVNALSQHFSVRSVRNKKFLKASFSKGILLH--TEQGATQDPDGTEVIFSPDH 169

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           ++F    F  + L+ ++R+ ++L+  + I    +R             G+        + 
Sbjct: 170 ELFENFSFQVEFLKKKIRQYTYLHPGLTIIYNGERIVS--------TRGLLDLFEEEVQT 221

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
                    +         +       +   E    F N     DGGTHL   +  + + 
Sbjct: 222 PLLYSPITFQHSD------LAFLFSHTETSSEQYFSFVNGQETTDGGTHLVAFKEGIVKG 275

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  +  K+             D REG    ++IK+  P F SQTK KL ++ +R+ +   
Sbjct: 276 VNEFFGKN---------FSSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAKR 326

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRRKGVLDIASLPGKLADCS 418
           V + + + L+++P  A+ I +K+      R  A    ++L  ++  L       +     
Sbjct: 327 VKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   K S +F+ EG+SA  S    R+   QA+  LRGK +NV  ++ + +  + E+
Sbjct: 387 LTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L TALG         +  LRY+++I+ TDADVDG HIR L++TFF +    L+ +  L
Sbjct: 447 FYLATALGL----HKDSLQNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHL 502

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFID 592
           +I++ PL+ +    +  Y   EE     + +    E           G IS  + ++FI 
Sbjct: 503 FILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKKESALEITRFKGLGEISPKEFKSFIG 562

Query: 593 DALKIDKL 600
             +++  +
Sbjct: 563 ADMRLIPV 570



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 37/126 (29%)

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGE------- 744
           SN +      +  +               L TI  IG+K   + + R+KGLGE       
Sbjct: 499 SNHLFILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKKESALEITRFKGLGEISPKEFK 558

Query: 745 ------MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL---MGDEVEPRREFIQEN 795
                 M                L+ V + D    D   + L   MG   + R+ FI EN
Sbjct: 559 SFIGADM---------------RLIPVSLPDTETLD---TLLQFYMGKNTKERKLFIIEN 600

Query: 796 SLPSAL 801
            L + L
Sbjct: 601 -LVTNL 605


>gi|19880873|gb|AAM00524.1|AF458970_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 143/738 (19%), Positives = 264/738 (35%), Gaps = 79/738 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 1   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 57

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 58  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 117

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 118 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 176

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++     + + 
Sbjct: 177 MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVY 236

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWND 267
           L  K                         + +          I   R N   ++A   +D
Sbjct: 237 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINNRWEVAFAVSD 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 297 ISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ILEILKKKKKKSVKSFQIKNNMF 350

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++ + + 
Sbjct: 351 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIAD 405

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
             +     +    RK  +              ++  K  L L EGDSA      G A  G
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVG 465

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 466 RD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 523

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  ++  K  +      ++ D
Sbjct: 524 MTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 583

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +        +           L   +                +         I   
Sbjct: 584 YEKWREEESHKFTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHS 629

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
                   I+++ + K A+       + E            ++    + +     +    
Sbjct: 630 LQGNDKDYIDLAFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKEL 680

Query: 682 IFSFGSKYKRIFSNRIEE 699
           I    +   R   N ++ 
Sbjct: 681 ILFSLADNIRSIPNVLDG 698


>gi|20387176|dbj|BAB91288.1| gyrase B [Streptomyces sp. IFO 13422]
 gi|308152557|dbj|BAJ22257.1| DNA gyrase subunit B [Streptomyces luteireticuli]
          Length = 399

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 185/401 (46%), Positives = 260/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + ++ +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGFRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R     E          
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPDHVDEEGKALTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV+Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVTYLNSRKGELIHPTVISFEAEDKERMLSLEVAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|255349049|ref|ZP_05381056.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 70]
 gi|255503587|ref|ZP_05381977.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 70s]
          Length = 605

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 159/608 (26%), Positives = 266/608 (43%), Gaps = 53/608 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
           + ++Y   SI  L  LD ++ R  MYIG     S    G++ +  EV+DNAIDE + GY 
Sbjct: 3   KKTAYSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGG 119
             I +T +     ++ D GRGIP             VI     ++ G K+ Q  +  S G
Sbjct: 63  HTIHITGDA-HELSIRDEGRGIPLGK----------VIDCVSKINTGAKYTQDVFHFSVG 111

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVG+  VNALS    +R  R     + SF  GIL +     G+  +  GTEV F P  
Sbjct: 112 LNGVGLKAVNALSQHFSVRSVRNKKFLKASFSKGILLH--TEQGATQDPDGTEVIFSPDH 169

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           ++F    F  + L+ ++R+ ++L+  + I    +R             G+        + 
Sbjct: 170 ELFENFSFQVEFLKKKIRQYTYLHPGLTIIYNGERIVS--------TRGLLDLFEEEVQT 221

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
                    +         +       +   E    F N     DGGTHL   +  + + 
Sbjct: 222 PLLYSPITFQHSD------LAFLFSHTETSSEQYFSFVNGQETTDGGTHLVAFKEGIVKG 275

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  +  K+             D REG    ++IK+  P F SQTK KL ++ +R+ +   
Sbjct: 276 VNEFFGKN---------FSSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAKR 326

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRRKGVLDIASLPGKLADCS 418
           V + + + L+++P  A+ I +K+      R  A    ++L  ++  L       +     
Sbjct: 327 VKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   K S +F+ EG+SA  S    R+   QA+  LRGK +NV  ++ + +  + E+
Sbjct: 387 LTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L TALG         +  LRY+++I+ TDADVDG HIR L++TFF +    L+ +  L
Sbjct: 447 FYLATALGL----HKDSLQNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHL 502

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFID 592
           +I++ PL+ +    +  Y   EE     + +    E           G IS  + ++FI 
Sbjct: 503 FILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKKESALEITRFKGLGEISPKEFKSFIG 562

Query: 593 DALKIDKL 600
             +++  +
Sbjct: 563 ADMRLTPV 570



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 37/126 (29%)

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGEMNASQ-- 749
           SN +      +  +               L TI  IG+K   + + R+KGLGE++  +  
Sbjct: 499 SNHLFILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKKESALEITRFKGLGEISPKEFK 558

Query: 750 -------------LWET-TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
                        L +T TL+    +LL+            F   MG   + R+ FI EN
Sbjct: 559 SFIGADMRLTPVSLPDTETLD----TLLQ------------FY--MGKNTKERKLFIIEN 600

Query: 796 SLPSAL 801
            L + L
Sbjct: 601 -LVTNL 605


>gi|19880894|gb|AAM00542.1|AF458973_3 TOP2 [Saccharomyces cerevisiae]
 gi|256270263|gb|EEU05481.1| Top2p [Saccharomyces cerevisiae JAY291]
          Length = 1428

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 143/738 (19%), Positives = 264/738 (35%), Gaps = 79/738 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 1   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 57

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 58  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 117

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 118 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 176

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++     + + 
Sbjct: 177 MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVY 236

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWND 267
           L  K                         + +          I   R N   ++A   +D
Sbjct: 237 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTARSDIPTILYERINNRWEVAFAVSD 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 297 ISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMF 350

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++ + + 
Sbjct: 351 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIAD 405

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
             +     +    RK  +              ++  K  L L EGDSA      G A  G
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVG 465

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 466 RD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 523

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  ++  K  +      ++ D
Sbjct: 524 MTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 583

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +        +           L   +                +         I   
Sbjct: 584 YEKWREEESHKFTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHS 629

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
                   I+++ + K A+       + E            ++    + +     +    
Sbjct: 630 LQGNDKDYIDLAFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKEL 680

Query: 682 IFSFGSKYKRIFSNRIEE 699
           I    +   R   N ++ 
Sbjct: 681 ILFSLADNIRSIPNVLDG 698


>gi|322786140|gb|EFZ12747.1| hypothetical protein SINV_05088 [Solenopsis invicta]
          Length = 1518

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 139/748 (18%), Positives = 264/748 (35%), Gaps = 82/748 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +  +                      GL+ +  E+L NA
Sbjct: 31  YQKKSQLEHILLRPDTYIGSVEPVTEMMWVFDKEKEMMVQKEIKYVPGLYKIFDEILVNA 90

Query: 53  IDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        D+I + ++  + + +V +NG+GIP  +HKEE +    +I   L     ++
Sbjct: 91  ADNKQRDPKMDMIKIDIDSENNTISVWNNGKGIPVVIHKEENMYVPTMIFGHLLTSSNYD 150

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY----EMSFINGILDNPLVVTGSAG 166
            +  KV+GG +G G  + N  S    +        Y    + ++ N +            
Sbjct: 151 DEEEKVTGGRNGYGAKLCNIFSHRFTVETAT--KEYKKSLKQTWGNNMGKASEPRIKEYY 208

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            +  T+VTF P    F +Q  + D    +  R  +++  +  V++ L   R         
Sbjct: 209 GEDFTKVTFSPDLTKFKMQSLDDDIVSLMSRRAYDVAASSKGVKVYLNGHR--------- 259

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
                 + +V    + K+  + +P+++         ++A+  +D      + F N+I   
Sbjct: 260 IPVKNFKDYVDCYIKGKEDDVGNPLKVVYENCGPRWEVALTLSDK-GFQQMSFVNSIATT 318

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG H+  +   + +Q+   ++K   +     ++     +      ++  + +P F SQT
Sbjct: 319 KGGRHVDHVTELIVKQLIETLKKKNKAG---ITIKPFQIKNHLWIFVNCLINNPTFDSQT 375

Query: 344 KEKLVSSEVRSVVESFVNDGLS--AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           K      E  ++ +       +          +  ++   +  A    D+         +
Sbjct: 376 K------ENMTLQQKSFGSKCALTDKFITSITKIGVVEAVLSWAKFKADSQLEKLGPKSK 429

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGK 456
           +  L          D       +  L L EGDSA      G A  GR +    I PLRGK
Sbjct: 430 QRKLHGIPKLEDANDAGTARSLECTLILTEGDSAKTMAVSGIASIGRDK--YGIFPLRGK 487

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHI 513
           +LNV  A   ++L + EI  LI  LG    +     +    LRY K++IMTD D DG+HI
Sbjct: 488 MLNVREATHKQILENAEINNLIKILGLQYKKKYETRDDLKTLRYGKMMIMTDQDQDGSHI 547

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           + LL+ F     PSL+   F+     P+   T+G  +         E +          +
Sbjct: 548 KGLLINFIHHNWPSLLKLNFIEEFITPIVKATKGSQVLSFFSLPEFEMWKKETENFHTYK 607

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
           +        S          A +  +  ++   +  +   +             ++    
Sbjct: 608 IKYYKGLGTS---------TAKEAKEYFENMTRHRIRFRYDGTQDDQNIIMAFSKKCVDQ 658

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
               L N +N    + E            L ++  R V     +    +        R  
Sbjct: 659 RKDWLMNHMNETKRRKEIGLG-----ERYLYEKDTRTVSFSDFINVELVLYSNYDNVRSI 713

Query: 694 SNRIEENYLT----ILSLICNGDKIKIT 717
            N ++         + + +   DK ++ 
Sbjct: 714 PNLMDGLKPGQRKVLFTCLKRNDKREVK 741


>gi|312376011|gb|EFR23229.1| hypothetical protein AND_13286 [Anopheles darlingi]
          Length = 1530

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 141/747 (18%), Positives = 266/747 (35%), Gaps = 79/747 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDT----------DGES------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG            D ES            GL+ +  E+L NA
Sbjct: 35  YQKKSQLEHILLRPDTYIGSIEMLKEQMWIYDKESNKMVQKEITYVPGLYKIFDEILVNA 94

Query: 53  IDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            D     +       I V +N +  + +V +NG+GIP  +HKEE +    +I   L    
Sbjct: 95  ADNKQRDAKM---STIKVEINQETNTISVWNNGQGIPVVMHKEEKMYVPTMIFGHLLTSS 151

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLR--IKREGNIYEMSFINGILD-NPLVVTGS 164
            +N +  KV+GG +G G  + N  S+   +    K+    ++ ++ + +   +   +   
Sbjct: 152 NYNDEEAKVTGGRNGYGAKLCNIFSTKFTVETATKQYKKCFKQTWGDNMSKASEPKIKED 211

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLIDKRSPEPREI 221
              +  T++TF P    F ++  + D +     R  +++     V + L   R P     
Sbjct: 212 FNGEDYTKITFSPDLSKFKMEKLDDDIIGLLSRRAFDVAASTRGVAVYLNGSRVPVKSFK 271

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                     F+          ++        R  +++ ++ R         + F N+I 
Sbjct: 272 DYVDL-----FLKDAKDDVGGQVKMCYESVNERWEVAVAISER-----GFQQVSFVNSIA 321

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG H+  +   + +Q+T  ++K     K   ++     +      ++  + +P F S
Sbjct: 322 TTKGGRHVDYVTDMVVKQLTEVLKKKN---KGGVAIKPFQIKNHMWVFVNCLIVNPTFDS 378

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE +         +  +++     + +       IV+ VL  +  +     A+    +
Sbjct: 379 QTKENMTLQSKSFGSKCNLSEKFINAVAKSG-----IVESVLQWAKFKAQTDLAKTSGSK 433

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKIL 458
           K  +          D   R+     L L EGDSA   A  G     R+   + PLRGK+L
Sbjct: 434 KSKIKGIPKLEDANDAGSRNSLNCTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKLL 493

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRT 515
           NV  A   ++L + EI  LI  LG    +     +    LRY K++IMTD D DG+HI+ 
Sbjct: 494 NVREATHKQILENAEINNLIKILGLQYKKKYLTTDDLKTLRYGKVMIMTDQDQDGSHIKG 553

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIEL 574
           LL+ F     P L+   FL     P+   T+   +          E++      +    +
Sbjct: 554 LLINFIHTNWPELLRLPFLEEFITPIVKATKKNGTELSFFSLPEFEEWKAETPNAHTFNI 613

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
                   S +         ++  +++  +  N D   I                 +   
Sbjct: 614 KYYKGLGTSTSKEAKEYFQNMERHRILFRYEDNGDDDAI-------------MMAFSKKA 660

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
             +  + L    E+        +     L  +  + +  +  +    +    S   R   
Sbjct: 661 VDQRKDWLTAHMEECRHRKQVGLQE-RYLYTKTTKAISYKDFVNLELVLFSNSDNVRSIP 719

Query: 695 NRIEENYLTILSLI----CNGDKIKIT 717
             ++        ++       DK ++ 
Sbjct: 720 CMLDGLKPGQRKVMFTCFKRNDKREVK 746


>gi|289525705|emb|CBJ15186.1| DNA gyrase subunit B [Chlamydia trachomatis Sweden2]
 gi|296435274|gb|ADH17452.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis E/150]
 gi|296438993|gb|ADH21146.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis E/11023]
          Length = 605

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 159/608 (26%), Positives = 266/608 (43%), Gaps = 53/608 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
           + ++Y   SI  L  LD ++ R  MYIG     S    G++ +  EV+DNAIDE + GY 
Sbjct: 3   KKTAYSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGG 119
             I +T +     ++ D GRGIP             VI     ++ G K+ Q  +  S G
Sbjct: 63  HTIHITGDA-HELSIRDEGRGIPLGK----------VIDCVSKINTGAKYTQDVFHFSVG 111

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVG+  VNALS    +R  R     + SF  GIL +     G+  +  GTEV F P  
Sbjct: 112 LNGVGLKAVNALSQHFSVRSVRNKKFLKASFSKGILLH--TEQGATQDPDGTEVIFSPDH 169

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           ++F    F  + L+ ++R+ ++L+  + I    +R             G+        + 
Sbjct: 170 ELFENFSFQVEFLKKKIRQYTYLHPGLTIIYNGERIVS--------TRGLLDLFEEEVQT 221

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
                    +         +       +   E    F N     DGGTHL   +  + + 
Sbjct: 222 PLLYSPITFQHSD------LAFLFSHTETSSEQYFSFVNGQETTDGGTHLVAFKEGIVKG 275

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  +  K+             D REG    ++IK+  P F SQTK KL ++ +R+ +   
Sbjct: 276 VNEFFGKN---------FSSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAKR 326

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRRKGVLDIASLPGKLADCS 418
           V + + + L+++P  A+ I +K+      R  A    ++L  ++  L       +     
Sbjct: 327 VKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   K S +F+ EG+SA  S    R+   QA+  LRGK +NV  ++ + +  + E+
Sbjct: 387 LTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L TALG         +  LRY+++I+ TDADVDG HIR L++TFF +    L+ +  L
Sbjct: 447 FYLTTALGL----HKDSLQNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHL 502

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFID 592
           +I++ PL+ +    +  Y   EE     + +    E           G IS  + ++FI 
Sbjct: 503 FILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKKESALEITRFKGLGEISPKEFKSFIG 562

Query: 593 DALKIDKL 600
             +++  +
Sbjct: 563 ADMRLTPV 570



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 37/126 (29%)

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGEMNASQ-- 749
           SN +      +  +               L TI  IG+K   + + R+KGLGE++  +  
Sbjct: 499 SNHLFILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKKESALEITRFKGLGEISPKEFK 558

Query: 750 -------------LWET-TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
                        L +T TL+    +LL+            F   MG   + R+ FI EN
Sbjct: 559 SFIGADMRLTPVSLPDTETLD----TLLQ------------FY--MGKNTKERKLFIIEN 600

Query: 796 SLPSAL 801
            L + L
Sbjct: 601 -LVTNL 605


>gi|20387174|dbj|BAB91287.1| gyrase B [Streptomyces lilacinus]
          Length = 399

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 184/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R     E          
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPDHVDEEGKALTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I  +       +S++++M+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGELVHPTVIAFEAEDKERMLSLEVSMQWNTQYTEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|317420214|emb|CBW30264.1| gyrase B subunit [Psychrobacter maritimus]
          Length = 380

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 221/383 (57%), Positives = 284/383 (74%), Gaps = 3/383 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L++ I REG  Y  ++ +G+ D  +     A + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSKTLEMNIWREGYHYHQTYTDGVPDGDIQQ-MEATDKTGTQIRFYP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D+F+   F YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FVSY++
Sbjct: 60  SNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSYIN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
             K  +      +    D IS+++A++W D Y+E VLCFTNNIPQ+DGGTHLSG RSALT
Sbjct: 118 AGKDGINDVFHFVSEQDDGISVEVALQWTDTYNEKVLCFTNNIPQRDGGTHLSGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+++    KK+K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 178 RGLNSYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S ++D  + +L E+P   K I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC
Sbjct: 238 SAMHDKFNDYLLENPSTGKAIASKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+G L
Sbjct: 298 QEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNL 357

Query: 478 ITALGTGIGQDSFDINKLRYHKI 500
           ITALG GIG D ++ +K+RYHKI
Sbjct: 358 ITALGCGIGPDEYNPDKVRYHKI 380


>gi|146164143|gb|ABQ08736.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
          Length = 367

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 222/370 (60%), Positives = 281/370 (75%), Gaps = 3/370 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSF 490
           LG GIG+D +
Sbjct: 358 LGCGIGRDEY 367


>gi|20387170|dbj|BAB91285.1| gyrase B [Streptomyces mobaraensis]
 gi|308152579|dbj|BAJ22268.1| DNA gyrase subunit B [Streptomyces mobaraensis]
          Length = 399

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 187/401 (46%), Positives = 262/401 (65%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALSS + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSSRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   D++++TL  R +E++FLN  + I+L D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTDYSFETLSRRFQEMAFLNKGLTIALTDERPDHVDEEGKPLTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I ++       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGELIHPTVISLEAEDKERQLSLEIAMQWNSQYTEGVYSFANIIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V + L+ WL+ +P+EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKAVYEHLTDWLDRNPIEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPAKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDIDKLRYHKIIL 399


>gi|146164149|gb|ABQ08737.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 367

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 221/370 (59%), Positives = 281/370 (75%), Gaps = 3/370 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSF 490
           LG GIG+D +
Sbjct: 358 LGCGIGRDEY 367


>gi|6729271|dbj|BAA89757.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 419

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 178/422 (42%), Positives = 252/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y +SGGLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           + V F     +F   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  STVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVPQDEVVDEVVSDVAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K  +  S +   G      ++
Sbjct: 119 APKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 179 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V 
Sbjct: 239 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 359 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|170047758|ref|XP_001851377.1| DNA topoisomerase 2 [Culex quinquefasciatus]
 gi|167870064|gb|EDS33447.1| DNA topoisomerase 2 [Culex quinquefasciatus]
          Length = 1358

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 132/747 (17%), Positives = 259/747 (34%), Gaps = 79/747 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 49  YQKKSQLEHILLRPDTYIGSVEQLKETQWIYDTEANKMIQKEITFVPGLYKIFDEILVNA 108

Query: 53  IDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            D     +       I + +N +  + ++ +NG+GIP  +HKEE +    +I   L    
Sbjct: 109 ADNKQRDAKM---TAIKIDINQETNTISIWNNGQGIPVVMHKEEKMYVPTMIFGHLLTSS 165

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGS- 164
            +N +  KV+GG +G G  + N  S+   +    K+    ++ ++ + +           
Sbjct: 166 NYNDEEQKVTGGRNGYGAKLCNIFSTKFTVETASKQYKKAFKQTWGDNMSKASEPKIKEG 225

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           A  +  T++TF P    F ++  + D    +  R  +++     V + L  K+ P     
Sbjct: 226 ASGEDYTKITFSPDLTKFKMEKLDDDIVGLMSRRAFDVAASTRGVAVYLNGKKLPIKNFK 285

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                     +V          ++        R  +++ ++           + F N+I 
Sbjct: 286 DYIDL-----YVKEQQEDVSAPIKVCYENANERWEVAVAIS-----EKGFQQVSFVNSIA 335

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG H+  +   + +Q+   ++K     K   ++     +      ++  + +P F S
Sbjct: 336 TTKGGRHVDYVTDMIVKQLIEVLKKKN---KGGINIKPFQVKNHMWVFINCLIVNPTFDS 392

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE +         +  +++     + +       IV+ VL  +  +      +    +
Sbjct: 393 QTKENMTLQAKSFGSKCALSEKFITAVSKSG-----IVESVLQWAKFKAQTELNKASGSK 447

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKIL 458
           K  +          D   ++     L L EGDSA   A  G     R+   + PLRGK+L
Sbjct: 448 KSKIKGVPKLEDANDAGTKNSLNCTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKLL 507

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRT 515
           NV  A   ++L + EI  LI  LG    +    I+    LRY K++IMTD D DG+HI+ 
Sbjct: 508 NVREATHKQILENAEINNLIKILGLQYKKKYLTIDDLKTLRYGKVMIMTDQDQDGSHIKG 567

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIEL 574
           LL+ F     P L+   FL     P+   T+              E++    + S    +
Sbjct: 568 LLINFIHTNWPELLRLPFLEEFITPIVKATKKNGEELSFFSLPEFEEWKTETANSHTYNI 627

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
                   S          + +  +  ++   +      + +           ++     
Sbjct: 628 KYYKGLGTS---------TSKEAKEYFQNMERHRILFTYDTSTDDDAITMAFAKKCVDQR 678

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
              L   +     +  +           L  +  R +  +  +    +    S   R   
Sbjct: 679 KEWLTAHM-----EENRHRKLVGLPERYLYTKTTRAISYKEFINLELVLFSNSDNVRSIP 733

Query: 695 NRIEENYLTILSLI----CNGDKIKIT 717
             ++        ++       DK ++ 
Sbjct: 734 CVLDGLKPGQRKVMFTCFKRNDKREVK 760


>gi|20387194|dbj|BAB91297.1| gyrase B [Streptomyces olivoreticuli subsp. cellulophilus]
 gi|20387196|dbj|BAB91298.1| gyrase B [Streptomyces olivoreticuli]
 gi|308152561|dbj|BAJ22259.1| DNA gyrase subunit B [Streptomyces olivoreticuli]
 gi|308152581|dbj|BAJ22269.1| DNA gyrase subunit B [Streptomyces olivoreticuli]
          Length = 399

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 183/401 (45%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +KR+G  +   +  G    PL        +TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKRDGFHWTQDYKLGAPTAPLQK-NEPTEETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLSVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  S I  +       +S++++M+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVIHPSVIAFESEDKERMLSLEVSMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + EI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNTEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|38224384|gb|AAR14134.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp. necrophorum]
          Length = 400

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 177/402 (44%), Positives = 252/402 (62%), Gaps = 5/402 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGND 168
             +YKVSGGLHGVG+SVVNALS W K+++KREGN+Y   ++ G     + +      G  
Sbjct: 2   NDNYKVSGGLHGVGISVVNALSEWTKVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGET 61

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  +IF    F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +  ++GG
Sbjct: 62  TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGG 121

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  F+    R    L +             I        G   + L   NNI   +GG+H
Sbjct: 122 ISDFLKKSSRKSNSLSKQIHLKDRGTSRGDIAFTYTPVKG---SYLFLVNNINTTEGGSH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++GLR+ LT+ I    +     +  +  +          +++S+K+P P+F  QTK KL 
Sbjct: 179 VTGLRTCLTKVINDIGKSQGIFEGKRWKITRRRHSGRNWAIISVKVPQPQFEGQTKTKLG 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEV  +V + ++  L  +LE++P + K+I++K+L +   R+AA+RAR+   RK VL++ 
Sbjct: 239 NSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSVLEVG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADCS + P++ E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K 
Sbjct: 299 SLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKA 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           L S EI  ++TA GT IG++SFD+ KLRY KII+MTDADVDG
Sbjct: 359 LESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 400


>gi|6729257|dbj|BAA89750.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729305|dbj|BAA89774.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729307|dbj|BAA89775.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729309|dbj|BAA89776.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729311|dbj|BAA89777.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729313|dbj|BAA89778.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729315|dbj|BAA89779.1| DNA gyrase subunit B [Mycobacterium kansasii]
          Length = 419

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 177/422 (41%), Positives = 255/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y +SGGLHGVGVSVVNALS+ L++ IKR+G+ +   +        L   G+    TG
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGHEWSQVYEKSEPMG-LKQ-GAPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    ++F   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPNVFETTEYDFETVARRLQEMAFLNKGLTINLTDQRVTQDEVVDEVVSDVAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + ++ T  Y GG+  FV +++R K  +  S +   G      ++
Sbjct: 119 APKSASEKAAESAAPHKVKKRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGPGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K+   ++ GD
Sbjct: 179 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKEKDPNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK +V 
Sbjct: 239 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKTVVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI +LRYHKI
Sbjct: 359 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIARLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|15605394|ref|NP_220180.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|76789401|ref|YP_328487.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis A/HAR-13]
 gi|237803091|ref|YP_002888285.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|237805012|ref|YP_002889166.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311487|ref|ZP_05354057.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 6276]
 gi|255317788|ref|ZP_05359034.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 6276s]
 gi|3329111|gb|AAC68256.1| DNA Gyrase Subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|76167931|gb|AAX50939.1| DNA gyrase subunit B [Chlamydia trachomatis A/HAR-13]
 gi|231273312|emb|CAX10227.1| DNA gyrase subunit B [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274325|emb|CAX11120.1| DNA gyrase subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|296436201|gb|ADH18375.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/9768]
 gi|296437130|gb|ADH19300.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/11222]
 gi|296438061|gb|ADH20222.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/11074]
 gi|297140563|gb|ADH97321.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/9301]
 gi|297748792|gb|ADI51338.1| DNA gyrase subunit B [Chlamydia trachomatis D-EC]
 gi|297749672|gb|ADI52350.1| DNA gyrase subunit B [Chlamydia trachomatis D-LC]
          Length = 605

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 159/608 (26%), Positives = 266/608 (43%), Gaps = 53/608 (8%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGYA 61
           + ++Y   SI  L  LD ++ R  MYIG     S    G++ +  EV+DNAIDE + GY 
Sbjct: 3   KKTAYSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYG 62

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGG 119
             I +T +     ++ D GRGIP             VI     ++ G K+ Q  +  S G
Sbjct: 63  HTIHITGDA-HELSIRDEGRGIPLGK----------VIDCVSKINTGAKYTQDVFHFSVG 111

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           L+GVG+  VNALS    +R  R     + SF  GIL +     G+  +  GTEV F P  
Sbjct: 112 LNGVGLKAVNALSQHFSVRSVRNKKFLKASFSKGILLH--TEQGATQDPDGTEVVFSPDH 169

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           ++F    F  + L+ ++R+ ++L+  + I    +R             G+        + 
Sbjct: 170 ELFENFSFQVEFLKKKIRQYTYLHPGLTIIYNGERIVS--------TRGLLDLFEEEVQT 221

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
                    +         +       +   E    F N     DGGTHL   +  + + 
Sbjct: 222 PLLYSPITFQHSD------LAFLFSHTETSSEQYFSFVNGQETTDGGTHLVAFKEGIVKG 275

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  +  K+             D REG    ++IK+  P F SQTK KL ++ +R+ +   
Sbjct: 276 VNEFFGKN---------FSSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAKR 326

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRRKGVLDIASLPGKLADCS 418
           V + + + L+++P  A+ I +K+      R  A    ++L  ++  L       +     
Sbjct: 327 VKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKFH 386

Query: 419 ----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                   K S +F+ EG+SA  S    R+   QA+  LRGK +NV  ++ + +  + E+
Sbjct: 387 LTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDEL 446

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
             L TALG         +  LRY+++I+ TDADVDG HIR L++TFF +    L+ +  L
Sbjct: 447 FYLTTALGL----HKDSLQNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHL 502

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFID 592
           +I++ PL+ +    +  Y   EE     + +    E           G IS  + ++FI 
Sbjct: 503 FILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKKESSLEITRFKGLGEISPKEFKSFIG 562

Query: 593 DALKIDKL 600
             +++  +
Sbjct: 563 ADMRLTPV 570



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 37/126 (29%)

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGEMNASQ-- 749
           SN +      +  +               L TI  IG+K   + + R+KGLGE++  +  
Sbjct: 499 SNHLFILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKKESSLEITRFKGLGEISPKEFK 558

Query: 750 -------------LWET-TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
                        L +T TL+    +LL+            F   MG   + R+ FI EN
Sbjct: 559 SFIGADMRLTPVSLPDTETLD----TLLQ------------FY--MGKNTKERKLFIIEN 600

Query: 796 SLPSAL 801
            L + L
Sbjct: 601 -LVTNL 605


>gi|6324241|ref|NP_014311.1| Top2p [Saccharomyces cerevisiae S288c]
 gi|1351262|sp|P06786|TOP2_YEAST RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|19880866|gb|AAM00518.1|AF458969_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880880|gb|AAM00530.1|AF458971_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880887|gb|AAM00536.1|AF458972_3 TOP2 [Saccharomyces cerevisiae]
 gi|887623|emb|CAA61422.1| ORF N2244 [Saccharomyces cerevisiae]
 gi|1301989|emb|CAA95964.1| TOP2 [Saccharomyces cerevisiae]
 gi|285814563|tpg|DAA10457.1| TPA: Top2p [Saccharomyces cerevisiae S288c]
          Length = 1428

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 145/738 (19%), Positives = 266/738 (36%), Gaps = 79/738 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 1   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 57

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 58  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 117

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 118 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 176

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++     + + 
Sbjct: 177 MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVY 236

Query: 210 LIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           L  K             Y   +E      +            I   R N   ++A   +D
Sbjct: 237 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSD 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 297 ISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMF 350

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++ + + 
Sbjct: 351 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIAD 405

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
             +     +    RK  +              ++  K  L L EGDSA      G A  G
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVG 465

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 466 RD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 523

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  ++  K  +      ++ D
Sbjct: 524 MTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 583

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +        +           L   +                +         I   
Sbjct: 584 YEKWREEESHKFTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHS 629

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
                   I+++ + K A+       + E            ++    + +     +    
Sbjct: 630 LQGNDKDYIDLAFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKEL 680

Query: 682 IFSFGSKYKRIFSNRIEE 699
           I    +   R   N ++ 
Sbjct: 681 ILFSLADNIRSIPNVLDG 698


>gi|72007795|ref|XP_783546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
           purpuratus]
 gi|115967910|ref|XP_001184546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
           purpuratus]
          Length = 1448

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 135/660 (20%), Positives = 239/660 (36%), Gaps = 54/660 (8%)

Query: 15  IQILKGLDAVKKRPSMYIGDT----------DGE----------SGLHHMIYEVLDNAID 54
            Q    L+ +  RP  YIG T          D             GL+ +  E+L NA D
Sbjct: 60  YQKKSQLEHILIRPDTYIGSTEPFTETMWVVDDGVMVNREVTYVPGLYKIFDEILVNAAD 119

Query: 55  ESLEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                   + I +TL+ +    ++ +NG+GIP   HK E +   E+I   L     +N  
Sbjct: 120 NKQRDPTMNCIKITLDKEQNLISIWNNGKGIPVVEHKGEKMFVPEMIFGHLLTSSNYNDD 179

Query: 113 SYKVSGGLHGVGVSVVNALSSWLK-LRIKRE-GNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+    +   +E    ++ S+ N +                
Sbjct: 180 EKKVTGGRNGYGAKLCNIFSTKFTVVTACKEYKKKFKQSWHNNMSKTTSPKITPFEGTDF 239

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           TEVTF P    F + + + DT+     R  +L+  +  V++ L  KR             
Sbjct: 240 TEVTFNPDLSKFKMTELDADTMALLTRRAYDLAGGSKGVKVFLNGKR---------LPVN 290

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G +++V    + K     + +++   + N   ++ +  ++   + V  F N+I    GG 
Sbjct: 291 GFKSYVDLYIKDKVDETGNRLKLVHEQVNPRWEVCVCLSEKGFQQV-SFVNSIATTKGGR 349

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+  +   +  QI   V+K   +     ++     R      ++  + +P F SQTKE +
Sbjct: 350 HVDYVSDQIVNQIIQTVKKKNKAG---INIKPFQVRSHIWVFVNCAIENPTFDSQTKENM 406

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
                +      +++          +   I+      A     +    +  T +   +  
Sbjct: 407 TLQIKKFGSTCKLSEKFVKAAANCGIVENILSWMKFKA----QSQLDKKCHTSKHSKIKG 462

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKILNVERAR 464
                       ++     L L EGDSA   A  G     R++  + PLRGK+LNV  A 
Sbjct: 463 VPKLDDANSAGGKNSSVCTLILTEGDSAKSLAVSGLGVVGRDHYGVFPLRGKLLNVREAS 522

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             +++ + EI  +I  LG               LRY +++IMTD D DG+HI+ LL+ F 
Sbjct: 523 HKQIMENAEINNIIKILGLQYKNKYDSPESLKSLRYGRLMIMTDQDQDGSHIKGLLINFI 582

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
               P L+   FL     P+   ++                   +               
Sbjct: 583 HSNWPHLLQRNFLEEFITPIVKASKANET----TLPFYSLPEFEKWKDATDNWKTWKVKY 638

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
                     +       + +   P       + A I   F+ +  ++  V L+  L  R
Sbjct: 639 YKGLGTSTMKEAKEYFTDMERHRIPFEYTGPDDDAAIVLAFSKKKVEDRKVWLSEWLEER 698


>gi|19880929|gb|AAM00572.1|AF458978_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 145/738 (19%), Positives = 266/738 (36%), Gaps = 79/738 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 1   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 57

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 58  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 117

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 118 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 176

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++     + + 
Sbjct: 177 MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVY 236

Query: 210 LIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           L  K             Y   +E      +            I   R N   ++A   +D
Sbjct: 237 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSD 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 297 ISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMF 350

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++ + + 
Sbjct: 351 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIAD 405

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
             +     +    RK  +              ++  K  L L EGDSA      G A  G
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVG 465

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 466 RD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 523

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  ++  K  +      ++ D
Sbjct: 524 MTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 583

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +        +           L   +                +         I   
Sbjct: 584 YEKWREEESHKFTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHS 629

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
                   I+++ + K A+       + E            ++    + +     +    
Sbjct: 630 LQGNDKDYIDLAFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKEL 680

Query: 682 IFSFGSKYKRIFSNRIEE 699
           I    +   R   N ++ 
Sbjct: 681 ILFSLADNIRSIPNVLDG 698


>gi|19880950|gb|AAM00590.1|AF458981_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 145/738 (19%), Positives = 266/738 (36%), Gaps = 79/738 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 1   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 57

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 58  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 117

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 118 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 176

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++     + + 
Sbjct: 177 MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVY 236

Query: 210 LIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           L  K             Y   +E      +            I   R N   ++A   +D
Sbjct: 237 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSD 296

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 297 ISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMF 350

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++ + + 
Sbjct: 351 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIAD 405

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
             +     +    RK  +              ++  K  L L EGDSA      G A  G
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVG 465

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++I
Sbjct: 466 RD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 523

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     P L+   GFL     P+  ++  K  +      ++ D
Sbjct: 524 MTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 583

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           Y   +        +           L   +                +         I   
Sbjct: 584 YEKWREEESHKFTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHS 629

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
                   I+++ + K A+       + E            ++    + +     +    
Sbjct: 630 LQGNDKDYIDLAFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKEL 680

Query: 682 IFSFGSKYKRIFSNRIEE 699
           I    +   R   N ++ 
Sbjct: 681 ILFSLADNIRSIPNVLDG 698


>gi|20387204|dbj|BAB91302.1| gyrase B [Streptomyces parvisporogenes]
          Length = 399

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 260/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + ++ +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGFRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  S I  +       +S++++M+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVVHPSVIAFESEDKERLLSLEVSMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + EI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNTEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|4587045|dbj|BAA76598.1| DNA gyrase subunit B [Mycobacterium bovis]
 gi|6729235|dbj|BAA89739.1| DNA gyrase subunit B [Mycobacterium bovis]
 gi|6729247|dbj|BAA89745.1| DNA gyrase subunit B [Mycobacterium africanum]
 gi|6729249|dbj|BAA89746.1| DNA gyrase subunit B [Mycobacterium bovis]
 gi|6729259|dbj|BAA89751.1| DNA gyrase subunit B [Mycobacterium microti]
          Length = 419

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 177/422 (41%), Positives = 252/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y +SGGLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           + V F     +F   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  STVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K  +  S +   G      ++
Sbjct: 119 APKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 179 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P ++K++V 
Sbjct: 239 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 359 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|35210351|dbj|BAC92687.1| gyrase B subunit [Sulfobacillus thermosulfidooxidans]
          Length = 388

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 194/392 (49%), Positives = 271/392 (69%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG+SVVNALSS L    +  G ++   +  G   + +   G+   +TG
Sbjct: 1   GGVYKVSGGLHGVGLSVVNALSSELTATSRFNGGVFVQHYAKGKPLDAVTQVGTTT-ETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            EV F P ++IF    F++DTL +R+RE +FLN+ V +SL ++ +   R I   ++GG+E
Sbjct: 60  FEVIFRPDAEIFEDVHFSFDTLANRMREQAFLNAGVFLSLYEEATG--RSIQFEFQGGVE 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +FV YL+  +  L   PI   GS+D + +D+A+++ND Y+E +  F N I   +GG+H +
Sbjct: 118 SFVEYLNLSRDVLHPKPIAFSGSKDGVMVDVALQYNDTYNETIFTFANTIRTHEGGSHEA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G +SALTR    Y  K    K    ++ G+D REG T+++S+K+P+P+F  QTK KL +S
Sbjct: 178 GFKSALTRVCNDYARKLGLLKDQDANLSGEDVREGITAIVSVKLPEPQFEGQTKTKLGNS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR + E    DGL+ + EE+P  AK I++K + A+  R+AAR+AR+LTRRK VL+ ++L
Sbjct: 238 EVRGITEGITADGLATFFEENPSVAKRILEKSVQAARAREAARKARELTRRKSVLESSAL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL DCS RDPK+SEL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVERAR DK+L+
Sbjct: 298 PGKLTDCSSRDPKESELYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVERARVDKILA 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ++EI  +ITA+GTGIG D F ++K RYH+I+I
Sbjct: 358 NEEIRAMITAIGTGIG-DEFVLDKARYHRIVI 388


>gi|20387228|dbj|BAB91314.1| gyrase B [Streptomyces thioluteus]
          Length = 399

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 186/401 (46%), Positives = 260/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R     E          
Sbjct: 60  TTVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLSISLTDERPDHVDEEGKPLSVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV+Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVTYLNSRKGELVHPTVIDFEAEDKERMLSVEVAMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y       ++   ++ GDD REG T+++SIK+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLTGDDIREGLTAIISIKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARVDKILQNQEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|91079588|ref|XP_967653.1| PREDICTED: similar to topoisomerase II [Tribolium castaneum]
          Length = 1552

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 142/676 (21%), Positives = 247/676 (36%), Gaps = 70/676 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
            ++ Q    L+ +  RP  YIG  +                         GL+ +  E+L
Sbjct: 34  EETYQKKSQLEHILLRPDTYIGSVEKVDENMWVYDRDTEMIIQKNISYVPGLYKIFDEIL 93

Query: 50  DNAIDESLEGYA-DIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D        D I + +N  D   +V +NG+GIP  +HK E +    +I   L    
Sbjct: 94  VNAADNKQRDNTMDCIKIEINQDDNVISVWNNGQGIPVAMHKSENMYVPTMIFGHLLTSS 153

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGSA 165
            +N K  KV+GG +G G  + N  S+   +    +     ++  + N +           
Sbjct: 154 NYNDKEEKVTGGRNGYGAKLCNIFSTKFTVETATKEYKRHFKQVWGNNMTKASEPKIKDH 213

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             +  T++TF P    F ++    D    +  R  +++     V++ L  KR P      
Sbjct: 214 FGEDFTKITFSPDLVKFKMEKLEDDIVSLMCRRAFDVAASTRGVKVFLNGKRVP------ 267

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                  + +V +  + K        ++     N   ++AM  +D      + F N+I  
Sbjct: 268 ---VKNFKDYVDFFTKGKDEDGNEKCKVVYEVCNERWEVAMTLSDR-GFQQMSFVNSIAT 323

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG H+  +   + +QI   ++K     K   ++     +      ++  + +P F SQ
Sbjct: 324 TKGGRHVDYVTEMIVKQIIEVLKKRN---KGGVAIKPFQVKNHMWIFINCLIVNPTFDSQ 380

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE +         +  +++     + +       IV+ VL  +  +      +    +K
Sbjct: 381 TKENMTLQAKSFGSKCTLSEKFITQVVKSG-----IVESVLSWAKFKAQTELEKKTAGKK 435

Query: 403 G-VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKIL 458
              L          +   ++  +  L L EGDSA   A  G     R+   + PLRGK+L
Sbjct: 436 QSKLKGIPKLEDANEAGTKNGLRCTLILTEGDSAKSLAVSGLGVIGRDYYGVFPLRGKLL 495

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL---RYHKIIIMTDADVDGAHIRT 515
           NV  A   ++L +QEI  LI  LG    +       +   RY K++IMTD D DG+HI+ 
Sbjct: 496 NVREATHKQILENQEINNLIKILGLQYKKKYNTDEDMRTLRYGKVMIMTDQDQDGSHIKG 555

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS----------LQYVKDEESLEDYLIN 565
           LL+ F     P L+   FL     P+    +              ++  +  +   Y I 
Sbjct: 556 LLINFIHYNWPELLRRDFLEEFITPIVKAKKRNETLSFYSLPEFEEWKSNTPNHRTYQIK 615

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDAL---KIDKLIKDFYPNHDKTFIEQAVISGVF 622
                      ++K   S                 D ++  F   H +   E       F
Sbjct: 616 YYKGLGTSDSKEAKEYFSDMARHRIRFRYKGPEDDDHIVLAFSKKHIEHRKEWLTN---F 672

Query: 623 NCESDQEINVSLASKL 638
             ES +   + LA K 
Sbjct: 673 MVESRRRKELGLAEKY 688


>gi|332027283|gb|EGI67367.1| DNA topoisomerase 2 [Acromyrmex echinatior]
          Length = 1552

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 146/770 (18%), Positives = 278/770 (36%), Gaps = 88/770 (11%)

Query: 1   MSDNIQNSSYDADS----------IQILKGLDAVKKRPSMYIGDTDGES----------- 39
           MS  + N + ++ S           Q    L+ +  RP  YIG  +  +           
Sbjct: 48  MSTAVANGAGNSKSVTKQKTIEGIYQKKSQLEHILLRPDTYIGSVETITEMMWVFDKEKE 107

Query: 40  -----------GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTD 86
                      GL+ +  E+L NA D        D+I + ++  + + +V +NG+GIP  
Sbjct: 108 MMVQKDIKYVPGLYKIFDEILVNAADNKQRDPKMDMIKIDIDSENNTISVWNNGKGIPVV 167

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +HKEE +    +I   L     ++ +  KV+GG +G G  + N  S    +        Y
Sbjct: 168 IHKEENMYVPTMIFGHLLTSSNYDDEEEKVTGGRNGYGAKLCNIFSHRFTVETAT--KEY 225

Query: 147 ----EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLREL 199
               + ++ + +             +  T+VTF P    F +Q  + D    +  R  ++
Sbjct: 226 KKCLKQTWGDNMGKASEPRIKEYFGEDFTKVTFSPDLSKFKMQSLDDDIVSLMSRRAYDV 285

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           +     V++ L   R P             + +V +  + K+  + +P++I     +   
Sbjct: 286 AASTKGVKVFLNGSRVP---------VKNFKDYVDFYIKGKEDDIGNPLKIVYENCSPRW 336

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A+  +D  ++ +  F N+I    GG H+  +   + +Q+   ++K   +      +  
Sbjct: 337 EVALTLSDKGYQQM-SFVNSIATTKGGRHVDHVTELIVKQLIETLKKKNKAGVA---IKP 392

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
              +      ++  + +P F SQTKE + + + +S         LS        +  ++ 
Sbjct: 393 FQIKNHMWIFVNCLINNPTFDSQTKENM-TLQPKSFGSKC---ALSDKFITSITKIGVVE 448

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA---- 435
             +  A    D+         ++  L          D       +  L L EGDSA    
Sbjct: 449 AVLTWAKFKADSQLEKLGPKSKQRKLHGIPKLEDANDAGTAKSLECTLILTEGDSAKTMA 508

Query: 436 -GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
             G A  GR +    I PLRGK+LNV  A   ++L + EI  LI  LG    +       
Sbjct: 509 VSGIASIGRDK--YGIFPLRGKMLNVREATHKQILENAEINNLIKILGLQYKKKYETRED 566

Query: 495 L---RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551
           +   RY K++IMTD D DG+HI+ LL+ F     PSL+   F+     P+   T+G  ++
Sbjct: 567 MKTLRYGKMMIMTDQDQDGSHIKGLLINFIHHNWPSLLKLNFIEEFITPIVKATKGSQVK 626

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
                   E +          ++        S          A +  +  ++   +  + 
Sbjct: 627 SFFSLPEFEQWKKETENFHTYKIKYYKGLGTS---------TAKEAKEYFENMSRHRIRF 677

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGV 671
             +             ++        L N +N    + E            L ++  R V
Sbjct: 678 RYDGEQDDQNIIMAFSKKCVDQRKDWLMNHMNETKRRKEIGLG-----ERYLYEKETRDV 732

Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT----ILSLICNGDKIKIT 717
                +    +        R   N ++         + + +   DK ++ 
Sbjct: 733 SFSDFVNVELVLYSNYDNVRSIPNMMDGFKPGQRKVLFTCLKRNDKREVK 782


>gi|4996804|dbj|BAA78447.1| subunit B protein of DNA gyrase [bacterium rM9]
          Length = 305

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 150/308 (48%), Positives = 202/308 (65%), Gaps = 32/308 (10%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHK 89
           T   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V+DNGRGIPT     D H 
Sbjct: 2   TSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKH- 60

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G ++++ 
Sbjct: 61  EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGKVHQIE 120

Query: 150 FINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRL 196
           F  G +             +P+ VTG A    GTEV FLP ++IF     F+Y+ L  RL
Sbjct: 121 FAKGFVQNRLLETVDGFEVSPMKVTG-ATEKRGTEVHFLPDTEIFQQNHEFHYEILAKRL 179

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD- 255
           RELSFLN+ V+I L D+RS +         GG++ FV +++  KK L  +     G+R  
Sbjct: 180 RELSFLNNGVRIRLKDERSGKE--DDFSGAGGVKGFVEFINGTKKVLHPTAFHATGTRPA 237

Query: 256 ---------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                     I +++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E 
Sbjct: 238 ESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIES 297

Query: 307 SFGSKKDK 314
           +  +KK K
Sbjct: 298 NELAKKAK 305


>gi|6729251|dbj|BAA89747.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729265|dbj|BAA89754.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729267|dbj|BAA89755.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729269|dbj|BAA89756.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729273|dbj|BAA89758.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729275|dbj|BAA89759.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729279|dbj|BAA89761.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729281|dbj|BAA89762.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729283|dbj|BAA89763.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729287|dbj|BAA89765.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729289|dbj|BAA89766.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729291|dbj|BAA89767.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729293|dbj|BAA89768.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729295|dbj|BAA89769.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729297|dbj|BAA89770.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729299|dbj|BAA89771.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 419

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 178/422 (42%), Positives = 252/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y +SGGLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           + V F     +F   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  STVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K  +  S +   G      ++
Sbjct: 119 APKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 179 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V 
Sbjct: 239 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 359 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|66474585|gb|AAY46862.1| GyrB [Aeromonas sp. 13m]
          Length = 371

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 222/374 (59%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIQPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|270004896|gb|EFA01344.1| topoisomerase II [Tribolium castaneum]
          Length = 1547

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 142/676 (21%), Positives = 247/676 (36%), Gaps = 70/676 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
            ++ Q    L+ +  RP  YIG  +                         GL+ +  E+L
Sbjct: 34  EETYQKKSQLEHILLRPDTYIGSVEKVDENMWVYDRDTEMIIQKNISYVPGLYKIFDEIL 93

Query: 50  DNAIDESLEGYA-DIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D        D I + +N  D   +V +NG+GIP  +HK E +    +I   L    
Sbjct: 94  VNAADNKQRDNTMDCIKIEINQDDNVISVWNNGQGIPVAMHKSENMYVPTMIFGHLLTSS 153

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGSA 165
            +N K  KV+GG +G G  + N  S+   +    +     ++  + N +           
Sbjct: 154 NYNDKEEKVTGGRNGYGAKLCNIFSTKFTVETATKEYKRHFKQVWGNNMTKASEPKIKDH 213

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             +  T++TF P    F ++    D    +  R  +++     V++ L  KR P      
Sbjct: 214 FGEDFTKITFSPDLVKFKMEKLEDDIVSLMCRRAFDVAASTRGVKVFLNGKRVP------ 267

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                  + +V +  + K        ++     N   ++AM  +D      + F N+I  
Sbjct: 268 ---VKNFKDYVDFFTKGKDEDGNEKCKVVYEVCNERWEVAMTLSDR-GFQQMSFVNSIAT 323

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG H+  +   + +QI   ++K     K   ++     +      ++  + +P F SQ
Sbjct: 324 TKGGRHVDYVTEMIVKQIIEVLKKRN---KGGVAIKPFQVKNHMWIFINCLIVNPTFDSQ 380

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE +         +  +++     + +       IV+ VL  +  +      +    +K
Sbjct: 381 TKENMTLQAKSFGSKCTLSEKFITQVVKSG-----IVESVLSWAKFKAQTELEKKTAGKK 435

Query: 403 G-VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKIL 458
              L          +   ++  +  L L EGDSA   A  G     R+   + PLRGK+L
Sbjct: 436 QSKLKGIPKLEDANEAGTKNGLRCTLILTEGDSAKSLAVSGLGVIGRDYYGVFPLRGKLL 495

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL---RYHKIIIMTDADVDGAHIRT 515
           NV  A   ++L +QEI  LI  LG    +       +   RY K++IMTD D DG+HI+ 
Sbjct: 496 NVREATHKQILENQEINNLIKILGLQYKKKYNTDEDMRTLRYGKVMIMTDQDQDGSHIKG 555

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS----------LQYVKDEESLEDYLIN 565
           LL+ F     P L+   FL     P+    +              ++  +  +   Y I 
Sbjct: 556 LLINFIHYNWPELLRRDFLEEFITPIVKAKKRNETLSFYSLPEFEEWKSNTPNHRTYQIK 615

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDAL---KIDKLIKDFYPNHDKTFIEQAVISGVF 622
                      ++K   S                 D ++  F   H +   E       F
Sbjct: 616 YYKGLGTSDSKEAKEYFSDMARHRIRFRYKGPEDDDHIVLAFSKKHIEHRKEWLTN---F 672

Query: 623 NCESDQEINVSLASKL 638
             ES +   + LA K 
Sbjct: 673 MVESRRRKELGLAEKY 688


>gi|285804190|gb|ADC35603.1| DNA topoisomerase IV subunit B [Geobacillus thermocatenulatus]
          Length = 395

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 176/400 (44%), Positives = 253/400 (63%), Gaps = 10/400 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGND 168
            Q  YK SGGLHGVG SVVNALS WL + I R+G IY   F + G     L   G   N 
Sbjct: 1   GQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F P   IFS   F+Y+TL  RLRE +FL   ++I L+D+R+         Y+ G
Sbjct: 60  TGTIIQFKPDPTIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MHDVFHYENG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           IEAFV+YL+  K  L    +   G +  I ++ A +++DGY ENVL F NN+  KDGGTH
Sbjct: 118 IEAFVAYLNEEKDVLHP-VVYFSGEQHGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTH 176

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEK 346
            +G ++A+TR    Y  +    K+  +++ G D REG ++V+S+++P+   +F  QTK K
Sbjct: 177 EAGAKTAMTRVFNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGK 236

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGV 404
           L +SE RS V++ V++ L+ +L+E+P  + +++KK + A   R+AAR+AR+   + +K  
Sbjct: 237 LGTSEARSAVDAVVSEQLTYFLQENPDVSTMLIKKAIRAYQAREAARKAREEARSDKKRK 296

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
              A L GKL     R+P+K+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+
Sbjct: 297 GKEALLSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAK 356

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
              +L ++EI T+I A+G G+G D F +  + Y K+IIMT
Sbjct: 357 LGDILKNEEINTIIHAIGGGVGAD-FSLEDVNYDKVIIMT 395


>gi|209863331|gb|ACI88765.1| DNA gyrase subunit B [Aeromonas sp. JH69]
          Length = 367

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 221/370 (59%), Positives = 281/370 (75%), Gaps = 3/370 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSF 490
           LG GIG+D +
Sbjct: 358 LGCGIGRDEY 367


>gi|310795452|gb|EFQ30913.1| topoisomerase IV [Glomerella graminicola M1.001]
          Length = 1779

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 135/567 (23%), Positives = 224/567 (39%), Gaps = 62/567 (10%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S      +Y     Q L  L+ + KRP  YIG  +                         
Sbjct: 115 SKKTATDTY-----QKLTQLEHIIKRPDTYIGSVEPTEQPMWVFNKETNLMEYRKVTYVP 169

Query: 40  GLHHMIYEVLDNAIDE----SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISA 95
           GL+ +  E+L NA D     +   Y   I+V     G  TV +NG+GIP ++H +E I  
Sbjct: 170 GLYKIFDEILVNAADNKQRDATMTYMK-ISVDREA-GEITVENNGKGIPVEIHGKEKIYI 227

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFING 153
            E+I   L  G  ++    K  GG +G G  + N  S    L  +    G  Y+  + + 
Sbjct: 228 PEMIFGHLLTGSNYDDDEKKTVGGRNGYGAKLCNVFSEQFTLECQDSNNGKRYKQIWTDN 287

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +         S+       VTF P    FS+   + D      R +  +  +V+  +   
Sbjct: 288 MSKCGKAKITSSKTSDFVRVTFKPDFKRFSMTGIDDDLEALIYRRVYDMAGTVR-GIKVH 346

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHE 271
            +    ++       + A     +R  +  ++  + ++  +   +   ++A   +DG  +
Sbjct: 347 LNGTHIKLAFKGYCEMYAKAIAKERGAEEGVEPKVVVEVDKTDAHPRWEIAFTVSDGTFQ 406

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N+I    GGTH++ +   +T  +   ++K       K++      R      ++
Sbjct: 407 QV-SFVNSIATTSGGTHVNYIADQITGSLLKTLDKKKKGHALKQNH----IRNHIFIFVN 461

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL-SAWLEEHPLEAKIIVKKVLDASMVRD 390
             + +P F+SQTKE++ +      V  F +    +    +   ++  I   +  A    D
Sbjct: 462 CLVNNPAFTSQTKEQMTTK-----VSQFGSKCALTEEFLKKIAKSDAIQNIIDFAEKKAD 516

Query: 391 AARRA----RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR--- 443
                    +        L  A+L G       R   +  L L EGDSA   A  GR   
Sbjct: 517 KMMAKSDGNKRSRISNSKLVDANLAG------TRHGHECTLILTEGDSAKSLAVAGRAIL 570

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
             +   + PLRGK+LNV  A  D++  +QEI  +   LG    Q   D   LRY  ++IM
Sbjct: 571 DPDRIGVFPLRGKMLNVRDASIDQITKNQEIQNIKQFLGLKHKQTYTDTKSLRYGHLMIM 630

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIH 530
            D D DG+HI+ LL+ F   Q PSL+ 
Sbjct: 631 ADQDHDGSHIKGLLINFLQVQYPSLLQ 657


>gi|23451174|gb|AAN32692.1| DNA gyrase subunit B [Aeromonas sp. 'CDC 2478-85']
          Length = 371

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 282/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+ +K+PDP+FSSQTK+KLV SEV++ VE  +
Sbjct: 178 NTYMDKEDYSKKAKSAASGDDVREGLIAVIPVKVPDPKFSSQTKDKLVCSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|209863315|gb|ACI88757.1| DNA gyrase subunit B [Aeromonas sp. JH120]
          Length = 369

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 221/372 (59%), Positives = 280/372 (75%), Gaps = 3/372 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPA 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDI 492
           LG GIG+D +  
Sbjct: 358 LGCGIGRDEYTP 369


>gi|209863301|gb|ACI88750.1| DNA gyrase subunit B [Aeromonas sp. JH102]
 gi|209863303|gb|ACI88751.1| DNA gyrase subunit B [Aeromonas sp. JH112]
 gi|209863307|gb|ACI88753.1| DNA gyrase subunit B [Aeromonas sp. JH440]
 gi|209863361|gb|ACI88780.1| DNA gyrase subunit B [Aeromonas sp. JH158]
 gi|209863365|gb|ACI88782.1| DNA gyrase subunit B [Aeromonas sp. JH441]
 gi|209863367|gb|ACI88783.1| DNA gyrase subunit B [Aeromonas sp. JH111]
          Length = 367

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 221/370 (59%), Positives = 280/370 (75%), Gaps = 3/370 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPA 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSF 490
           LG GIG+D +
Sbjct: 358 LGCGIGRDEY 367


>gi|270155334|gb|ACZ62713.1| DNA gyrase B [Paenibacillus sp. KUDC1047]
          Length = 375

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 188/377 (49%), Positives = 265/377 (70%), Gaps = 4/377 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  + + +KR+G++Y+  +  G     L   G    +TGT VTF P
Sbjct: 1   GGLHGVGVSVVNALSEKVVVTVKRDGHMYQQEYRRGAPQYDLKTIG-TAEETGTTVTFHP 59

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
             +IF+    ++Y+TL  R+REL+FLN  + ++L D+R+         Y+GGI  +VS+L
Sbjct: 60  DPEIFTETTVYDYETLLTRIRELAFLNKGIGLTLTDERTGATNS--FLYEGGIIEYVSFL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           ++ ++ L ++PI ++GSRDNI +++A+++ND + EN+  F NNI   +GGTH SG +SAL
Sbjct: 118 NQKREVLHENPIYVEGSRDNIQVEVALQYNDNFTENIYSFANNINTHEGGTHESGFKSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR I  Y  K+   K    ++ GDD REG T+++S+K+P+P+F  QTK KL +SEVR +V
Sbjct: 178 TRIINDYARKAGVIKDSTGNLSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES   + L  +LEE+P  ++ I++K L A+  R+AAR+AR+LTRRKG L+++SLPGKLAD
Sbjct: 238 ESLFAEKLQEFLEENPSVSRRILEKGLQAARAREAARKARELTRRKGALEVSSLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           CS +D   SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR D++L + EI  
Sbjct: 298 CSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRA 357

Query: 477 LITALGTGIGQDSFDIN 493
           +ITA+GTGIG D     
Sbjct: 358 IITAMGTGIGDDFDISK 374


>gi|28974169|gb|AAO61453.1| gyrase B subunit [Bacillus safensis]
 gi|28974171|gb|AAO61454.1| gyrase B subunit [Bacillus safensis]
          Length = 375

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 184/377 (48%), Positives = 260/377 (68%), Gaps = 3/377 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L + + R+G I+   F  G+    L V G   + TGT   F+P  +IF+  
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTET 59

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + 
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVH 119

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + P+ I+G +D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y 
Sbjct: 120 EEPVYIEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYA 179

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L
Sbjct: 180 RKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEAL 239

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P  AK IV+K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  
Sbjct: 240 EKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSI 299

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +ITALGTG
Sbjct: 300 SELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAMITALGTG 359

Query: 485 IGQDSFDINKLRYHKII 501
           IG+D F + K RYHK++
Sbjct: 360 IGED-FTLEKARYHKVV 375


>gi|10121857|gb|AAG13401.1|AF285155_1 topoisomerase II alpha-2 [Gallus gallus]
          Length = 1586

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 141/777 (18%), Positives = 277/777 (35%), Gaps = 104/777 (13%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 35  YQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVGLNCRDVTFVPGLYKIFDEILVNAA 94

Query: 54  DESLE-GYADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ +  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 95  DNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 154

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++ + +     +       + 
Sbjct: 155 DEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKKLFKQTWTDNMGKAGEMTLKHFDGED 214

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T VTF P    F +   + D    +  R  +++     V++ L  KR            
Sbjct: 215 YTCVTFQPDLSKFKMTILDKDIVALMSRRAYDIAGSTKDVKVFLNGKR---------LPV 265

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD-- 284
            G  ++V    + K     + +++     N   ++ +  ++   + V  F N+I      
Sbjct: 266 KGFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVCLTLSEKGFQQV-SFVNSIATTKVI 324

Query: 285 --GGTHLS----------------------------GLRSALTRQITSYVEKSFGSKKDK 314
               +H+                              +     + +T  ++      K+ 
Sbjct: 325 LSSCSHIHFIFFLLALCFVSLETPRALWSHFPLGGRHVDYVADQIVTKLIDVVKKKNKNG 384

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
             V     +      ++  + +P F SQTKE +            +++            
Sbjct: 385 VGVKPFQVKNHMWIFVNSLIENPTFDSQTKENMTLQAKSFGSTCKLSEKFIKGAV-GCGI 443

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
            + I+  V   +         +    +   +          D   ++     L L EGDS
Sbjct: 444 VESILNWVKFKAQ---TQLNKKCSAVKHTKIKGVPKLDDANDAGSKNSIDCTLILTEGDS 500

Query: 435 A-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           A      G    GR +    + PLRGK+LNV  A   +++ + EI  +I  +G    ++ 
Sbjct: 501 AKTLAVSGLGVVGRDK--YGVFPLRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNY 558

Query: 490 FDIN---KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            D      LRY KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++
Sbjct: 559 EDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKVSK 618

Query: 547 GKSLQYVKDEESLEDYLIN-QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
            K           E++  + Q+ +     +    G  +  + + +  D  +     K   
Sbjct: 619 NKEEIPFYSIPEFEEWKSSTQNYNSWKIKYYKGLGTSTSKEAKEYFADMARHRIGFKYSG 678

Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
           P       + A I+  F+ +  +E    L        NF+ ++ +++ HG   +   L  
Sbjct: 679 PE------DDAAITLAFSKKKVEERKEWLT-------NFMEDRRQRNVHGLPEDY--LYG 723

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITG 718
           +    +     +    +    S  +R   + ++        ++       DK ++ G
Sbjct: 724 KDTNYLTYNDFINKELVLFSNSDNERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKG 780


>gi|303388894|ref|XP_003072680.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
 gi|303301822|gb|ADM11320.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
          Length = 1141

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 135/591 (22%), Positives = 239/591 (40%), Gaps = 62/591 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEVL 49
            ++ Q    ++ +  RP  YIG  + E                       GL+ +  E++
Sbjct: 5   EETYQKKTPVEHILLRPDSYIGSVEKEMQQMYVWDEDNSKMVFKNIEYVPGLYKIFDEII 64

Query: 50  DNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +     ++I V+++ +    +V +NGRGIP  +HKEE +   E+I   L    
Sbjct: 65  VNAADNKIRDPKMNVIKVSIDPEKNEISVYNNGRGIPVRIHKEENVYVPELIFGNLLTSS 124

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFINGILDNPLVVTGS 164
            +N    KV+GG +G G  + N  S    +    +      Y+  + + +          
Sbjct: 125 NYNDDEKKVTGGRNGYGAKLCNIFSKEFIVETA-DCEVKKYYKQRYRDNMGIKEEPEISR 183

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLIDKRSPEPREI 221
              +  T +TF P    F +   + DT+   + R+ +L  +   V+I L +K+ P     
Sbjct: 184 YTKEDFTRITFKPDLRRFKMNKLDDDTVSLLKKRVYDLGGIVKDVKIFLNEKKIP----- 238

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                      V     + K  + S + I     N   +LA+  ++   + V  F N I 
Sbjct: 239 -----------VKGFKEYVKLYIPSGVNIVHQVINDRWELALTTSEEQFQQV-SFVNAIC 286

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG+H++ +   +   +   ++K     +   SV     +      ++  + +P F S
Sbjct: 287 TSKGGSHVNHVVERIVDPLLEAIQKK----EKGLSVRPFQIKSCMFIFVNCLIENPAFDS 342

Query: 342 QTKEKLVSSEVRSVVESFVNDGL-SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           QTKE L        V +F +     +   ++ ++   +V+KV   +  R + +  +    
Sbjct: 343 QTKENLTLR-----VSAFGSKCEPISDFVKNVIKNTSLVQKVTSFAKARQSQQLKKTDGA 397

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKI 457
           +   L                 K   L L EGDSA   A  G S   R+   + PLRGK+
Sbjct: 398 KTSRLSGIPKLEDANFAGTSKSKDCTLILTEGDSAKTLAVSGLSVVGRDIYGVFPLRGKL 457

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNV  A   +++ + EI  +   LG    +   D++ LRY  I+IMTD D DG+HI+ L+
Sbjct: 458 LNVREASHKQIMDNAEISNIKKILGLQHNKIYEDVSSLRYGHIMIMTDQDHDGSHIKGLI 517

Query: 518 LTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           + F     PSL+   GFL     P+   ++   ++        E++  N  
Sbjct: 518 INFLDHFYPSLLKIPGFLQEFITPIVRASKKGEVKDFFTLPEYEEFKKNSD 568


>gi|146424684|dbj|BAF62102.1| DNA gyrase subunit B [Bradyrhizobium iriomotense]
          Length = 269

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 154/265 (58%), Positives = 189/265 (71%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGK
Sbjct: 1   VDNAIDEALAGHATRVDVVLNPDNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGK 60

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A   
Sbjct: 61  FDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGK 120

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEVTFL S+  F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG
Sbjct: 121 RGTEVTFLASTQTFKNVEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGG 180

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +E FV YLDR+KK L+ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTH
Sbjct: 181 VEEFVKYLDRNKKALVPAPIMVRSESNGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTH 240

Query: 289 LSGLRSALTRQITSYVEKSFGSKKD 313
           L+G R ALTRQ+  Y E +   +K 
Sbjct: 241 LAGFRGALTRQVNGYAEANAKKEKI 265


>gi|45191011|ref|NP_985265.1| AER410Wp [Ashbya gossypii ATCC 10895]
 gi|44984079|gb|AAS53089.1| AER410Wp [Ashbya gossypii ATCC 10895]
          Length = 1427

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 154/758 (20%), Positives = 287/758 (37%), Gaps = 78/758 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT----------------------DGE 38
           M+  +      +++ Q +  L+ + KRP  YIG                        +  
Sbjct: 1   MTAIMTKEKNASETYQKITQLEHILKRPDTYIGSVEMQDFHMWVHDAEMDCMVEKQVNIV 60

Query: 39  SGLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E++ NA D  +       I V +N  +    V ++G GIP ++H +EGI   
Sbjct: 61  PGLFKIFDEIIVNAADNKVRDPSMKKIEVVINREENYIEVKNDGNGIPIEVHAKEGIYIP 120

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI 154
           E+I   L     ++    KV+GG +G G  + N  S+   L     + G  Y   + + +
Sbjct: 121 ELIFGHLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSTEFILETSDPKSGQKYVQKWESNM 180

Query: 155 LDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISL 210
               P  +T      + T++TF P    F ++  + D    ++ R+ +++     V +SL
Sbjct: 181 NVCHPPKITSYKKGPSYTKITFKPDLQRFGMEVLDDDILGVMRRRVYDINGSVRDVNVSL 240

Query: 211 IDK----RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ-SPIRIQGSRDNISIDLAMRW 265
             K    R+ +            +  +      +    + +   I   + N   +L    
Sbjct: 241 NGKSLKIRNFKSYMELYMRSLEKKRLIDSGMAPESASEKVNAPTILYEKVNDRWELGFAV 300

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           +D   + +  F N+I    GGTH++ L   + ++++  + K       K++V     R  
Sbjct: 301 SDISFQQI-SFVNSIATTSGGTHVNYLTDQIVKKVSELLSK------KKKTVKPFQIRNN 353

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F+SQTKE+L +      V  F +    +    + +    +  K+ + 
Sbjct: 354 IFIFINCLIENPAFTSQTKEQLTTR-----VRDFGSKCEVSSDFINKIMKTELATKIFEI 408

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS- 444
           +    A    +    RK  +              ++  K  L L EGDSA   A  G S 
Sbjct: 409 ADENAAKLLKQTDGTRKNRITDYPKLEDANKAGTKEGHKCTLVLTEGDSALSLAVAGLSV 468

Query: 445 --RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKI 500
             R+     PL+GKILNV  A  +++  + EI  +   +G    +     D+  LRY  +
Sbjct: 469 VGRDYYGCFPLKGKILNVRDASVEQIRKNTEIQAIKKIMGLQHKKQYTIEDMKTLRYGHV 528

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           +IMTD D DG+HI+ LL+ FF    P L+   GFL     P+  +T  K  + V    +L
Sbjct: 529 MIMTDQDHDGSHIKGLLINFFESTFPGLLDIPGFLIEFITPIMKVTILKPKKQVIPFYNL 588

Query: 560 EDYLI-NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
            DY     + S +          +  +  +   +    +D  IK F+             
Sbjct: 589 PDYEKWRDTESHKYVWKTKYYKGLGTSSFQEAREYFSALDVHIKKFHS------------ 636

Query: 619 SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
               N +    I+++ + K A+       + E       + ++I +            + 
Sbjct: 637 ---LNPDDSSLIDLAFSKKKADDRKEWLRQYEPGTVLDPHLTEIQIGDF---------IN 684

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
              I    +   R   + ++    +   +I    K  I
Sbjct: 685 KELILFSLADNLRSIPHLLDGLKPSQRKVIFGSFKRNI 722


>gi|20387226|dbj|BAB91313.1| gyrase B [Streptomyces takataensis]
 gi|20387238|dbj|BAB91319.1| gyrase B [Streptomyces sp. IFO 15818]
          Length = 399

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL       ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFHWTQDYKLGVPTAPLQK-NEPTDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLSVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  S I  +       +S++++M+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVVHPSVIAFEAEDKERMLSLEVSMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + EI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNTEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|20387112|dbj|BAB91256.1| gyrase B [Streptomyces abikoensis]
          Length = 399

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL       ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYHWTQDYKLGVPTAPLQK-NEPTDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLSVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  S I  +       +S++++M+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVVHPSVIAFEAEDKERMLSLEVSMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + EI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNTEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|20387234|dbj|BAB91317.1| gyrase B [Streptomyces ehimensis]
          Length = 399

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 257/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL       ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFHWTQDYKLGVPTAPLQK-NEPTDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R     E          
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPVHVDEEGKPLSVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  S I  +       +S++++M+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVVHPSVIAFEAEDKERMLSLEVSMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + EI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNTEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|28974159|gb|AAO61449.1| gyrase B subunit [Bacillus pumilus]
 gi|28974163|gb|AAO61451.1| gyrase B subunit [Bacillus safensis]
 gi|28974179|gb|AAO61458.1| gyrase B subunit [Bacillus safensis]
          Length = 375

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 184/377 (48%), Positives = 261/377 (69%), Gaps = 3/377 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L + + R+G I+   F  G+    L V G   + TGT   F+P  +IF+  
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTET 59

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YDTL +R+REL+FL   V I + D R  + R+    Y+GGI+++V +L+R K+ + 
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERKNEYCYEGGIKSYVEHLNRSKEVVH 119

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + P+ I+G +D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y 
Sbjct: 120 EEPVYIEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYA 179

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L
Sbjct: 180 RKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEAL 239

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P  AK IV+K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  
Sbjct: 240 EKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSI 299

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +ITALGTG
Sbjct: 300 SELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAMITALGTG 359

Query: 485 IGQDSFDINKLRYHKII 501
           IG+D F + K RYHK++
Sbjct: 360 IGED-FTLEKARYHKVV 375


>gi|28974167|gb|AAO61452.1| gyrase B subunit [Bacillus pumilus SAFR-032]
 gi|28974173|gb|AAO61455.1| gyrase B subunit [Bacillus pumilus]
 gi|28974175|gb|AAO61456.1| gyrase B subunit [Bacillus pumilus]
          Length = 375

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 183/377 (48%), Positives = 262/377 (69%), Gaps = 3/377 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+  
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDPEIFTET 59

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + 
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVH 119

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + P+ I+G RD I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y 
Sbjct: 120 EEPVYIEGERDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYA 179

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L
Sbjct: 180 RKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEAL 239

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  
Sbjct: 240 EKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSI 299

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 300 SELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 359

Query: 485 IGQDSFDINKLRYHKII 501
           IG+D F++ K RYHK++
Sbjct: 360 IGED-FNLEKARYHKVV 375


>gi|66474587|gb|AAY46863.1| GyrB [Aeromonas sp. 15m]
          Length = 371

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 221/374 (59%), Positives = 283/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPHAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K    KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYRKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|6729277|dbj|BAA89760.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 419

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 177/422 (41%), Positives = 252/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y +SGGLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           + V F     +F   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  STVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K  +  S +   G      ++
Sbjct: 119 APKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 179 IAIQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V 
Sbjct: 239 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 359 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|20387178|dbj|BAB91289.1| gyrase B [Streptomyces luteosporeus]
          Length = 399

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 185/401 (46%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLAVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I  +       +S++++M+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVVHPTVIAFEAEDKERMLSLEVSMQWNTQYTEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y        +   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLWEKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEELTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPAKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIIL 399


>gi|66474583|gb|AAY46861.1| GyrB [Aeromonas sp. 12m]
          Length = 371

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 221/374 (59%), Positives = 283/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPHAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TAIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|20387164|dbj|BAB91282.1| gyrase B [Streptomyces kashimirensis]
          Length = 399

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 184/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQQ-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R     E          
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPDHVDEEGKALTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I  +       +S++++M+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGELVHPTVIAFEAEDKERLLSLEVSMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|328353447|emb|CCA39845.1| DNA topoisomerase II [Pichia pastoris CBS 7435]
          Length = 1312

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 157/776 (20%), Positives = 273/776 (35%), Gaps = 80/776 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +D  Q L  L+ + KRP  YIG  +                         GL  +  E+L
Sbjct: 64  SDQYQKLSQLEHILKRPDTYIGSVEKHESEQWIYNKETESMERKVVSIVPGLFKIFDEIL 123

Query: 50  DNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I VT+  +     V ++G+GIP  +H +E I   E+I   L    
Sbjct: 124 VNAADNKIRDPSMKNIEVTIKPEENLIEVKNDGKGIPVQIHDKEHIYIPELIFGNLLTSS 183

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSA 165
            +N    KV+GG +G G  + N  S+   +       G +Y   +   +      V  S 
Sbjct: 184 NYNDDQKKVTGGRNGYGAKLCNIFSTEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSI 243

Query: 166 GNDT-GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDK-------- 213
              T  T+V+F P    F++ + + D    L+ R+ +L      + + L  +        
Sbjct: 244 KKATEYTKVSFRPDLAKFNMTELDEDILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNFK 303

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           +  E     + +K                       I     N   ++A   +D     V
Sbjct: 304 QYVEMYVKALEHKNDPIKTEDSSLLPPPSSSSPSQTIVYQTLNDRWEIAFAVSDSTFNQV 363

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GGTH++ +      QI   +EK   +K  K  +     +      ++  
Sbjct: 364 -SFVNSIATTSGGTHVNFI----ADQIVKKIEKEIKTKNKKAMIKPFQIKNNMFLFINCL 418

Query: 334 MPDPRFSSQTKEKLVS--SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           + +P F+SQTKE+L +  S+         +D +   L         IV  +LD + +   
Sbjct: 419 VENPAFTSQTKEQLTTRASQFGGKKTEVPDDFIKKILRTG------IVDAILDIAAMNAD 472

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRE 446
               ++   RK  +              ++  K  L L EGDSA      G A  GR   
Sbjct: 473 KALKKNDGSRKNRITGYPKLEDANKAGTKEGYKCTLILTEGDSASSLAVAGLAVVGRD-- 530

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMT 504
              + PLRGK+LNV  A  D+++ + EI  +   +G    ++    +IN LRY  I+IMT
Sbjct: 531 YYGVYPLRGKMLNVREASADQIMKNAEIQAIKQIMGFQHKKNYTPENINSLRYGHIMIMT 590

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGI-----TRGKSLQYVKDEES 558
           D D DG+HI+ L++ F     P L+      +    P+  +        + +        
Sbjct: 591 DQDHDGSHIKGLIINFLESSFPGLLKVPNFLLEFITPIVKVTITSGPEKRKVIPFYSMPE 650

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
            E +    + S + + +      +++            + +       +       Q V 
Sbjct: 651 YEAWREQNTESFKQKYYKGLGTSLAEE-----------MREYFSQLDKHMKTFHALQDVD 699

Query: 619 SGVFNCESDQEIN---VSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQF 675
            G  +    ++               ++   + S       IN   IL            
Sbjct: 700 PGFIDLAFSKKKADDRKEWLRGFEPGVHLDPDLSIIPISDFINKELILFSMADNIRSIPS 759

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
           +L+G         Y     N   E  ++ L+           G  SL+ +I  + +
Sbjct: 760 MLDGFKPSQRKILYGCYKRNLRSEIKVSQLAGYIGEHSAYHHGDQSLIQSIIGLAQ 815


>gi|19880936|gb|AAM00578.1|AF458979_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 141/727 (19%), Positives = 260/727 (35%), Gaps = 76/727 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +D  Q +  L+ + KRP  YIG  + +                       GL  +  E+L
Sbjct: 9   SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEIL 68

Query: 50  DNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I V ++  + +  V ++G+GIP ++H +E I   E+I   L    
Sbjct: 69  VNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 128

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFINGILDN-PLVVTG 163
            ++    KV+GG +G G  + N  S+   L    +   G  Y   + N +    P  +T 
Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENNMSICHPPKITS 187

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                + T+VTF P    F +++ + D    ++ R+ +++     + + L  K       
Sbjct: 188 YKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNGKSLKIRNF 247

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                             + +          I   R N   ++A   +D   + +  F N
Sbjct: 248 KNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINNRWEVAFAVSDISFQQI-SFVN 306

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           +I    GGTH++ +   + ++           KK K+SV     +      ++  + +P 
Sbjct: 307 SIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMFIFINCLIENPA 361

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F+SQTKE+L +      V+ F +         + +    +  ++ + +   +     +  
Sbjct: 362 FTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSD 416

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPL 453
             RK  +              ++  K  L L EGDSA      G A  GR        PL
Sbjct: 417 GTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPL 474

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++IMTD D DG+HI
Sbjct: 475 RGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHI 534

Query: 514 RTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           + L++ F     P L+   GFL     P+  ++  K  +      ++ DY   +      
Sbjct: 535 KGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHK 594

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
             +           L   +                +         I           I++
Sbjct: 595 FTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHSLQGNDKDYIDL 640

Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI 692
           + + K A+       + E            ++    + +     +    I    +   R 
Sbjct: 641 AFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKELILFSLADNIRS 691

Query: 693 FSNRIEE 699
             N ++ 
Sbjct: 692 IPNVLDG 698


>gi|6729285|dbj|BAA89764.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 419

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 177/422 (41%), Positives = 252/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y +SGGLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G+    TG
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           + V F     +F   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  STVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K  +  S +   G      ++
Sbjct: 119 APKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 179 IAVQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V 
Sbjct: 239 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 359 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus]
          Length = 1531

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 146/765 (19%), Positives = 283/765 (36%), Gaps = 82/765 (10%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQVNKIKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTVDPENNLISIWNNGKGIPVVEHKV 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    RE   +++ 
Sbjct: 133 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKKMFKQ 192

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F ++  + D    +  R  +++     
Sbjct: 193 TWMDNMGRAGEMELKPFSGEDYTCITFQPDLSKFKMKSLDKDIVALMVRRAYDIAGSTKD 252

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     +P+++   + N   ++ +  
Sbjct: 253 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNPLKVIHEQVNHRWEVCLTM 303

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 304 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNH 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTKE +            +++             + I+  V   
Sbjct: 360 MWIFVNALIENPTFDSQTKENMTLQPKSFGSTCHLSEKFIKAAI-GCGIVESILNWVKFK 418

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAK 440
           +         +    +   +          D   R+  +  L L EGDSA      G   
Sbjct: 419 AQ---VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGV 475

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRY 497
            GR R    + PLRGKILNV  A   +++ + EI  +I  +G    ++  D +    LRY
Sbjct: 476 VGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRY 533

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  I++ K         
Sbjct: 534 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKISKNKQEMAFYSLP 593

Query: 558 SLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
             E++  +     +    +    G  +  + + +  D  +     K   P       + A
Sbjct: 594 EFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYCGPE------DDA 647

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
            IS  F+ +   +    L        NF+ ++ ++   G   +   L  +    +     
Sbjct: 648 AISLAFSKKQIDDRKEWLT-------NFMEDRRQRKLLGLPEDY--LYGQTTTYLTYNDF 698

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKIT 717
           +    I    S  +R   + ++        ++       DK ++ 
Sbjct: 699 INKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 743


>gi|20387184|dbj|BAB91292.1| gyrase B [Streptomyces sp. IFO 13202]
          Length = 399

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 260/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +KR+G  +   +  G+   PL     A +D+G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKRDGFRWTQDYKLGVPTAPLQK-NEATDDSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++I+L D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRIALTDLRADHVDEEGKPLTVEYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERLLSVEVAMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|259018128|gb|ACV89656.1| DNA gyrase subunit B [Nocardia paucivorans]
          Length = 417

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 183/420 (43%), Positives = 259/420 (61%), Gaps = 32/420 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  +KR+G  +  S+ +      L + G    +TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLEAEVKRDGYHWSQSYKDATP-GKL-IQGEPTRETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P  +IF    FN++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWPDPEIFETTTFNFETVARRLQEMAFLNKGLTIVLTDERVGDTDVTDEVVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                         P+ +  T  Y GG+E FV +++R K P+  S +   G      +++
Sbjct: 119 APKHAEDGEQAPAEPKVKTRTYHYPGGLEDFVRHINRTKTPIHNSVVAFTGRGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI+KLRYHKI+
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGI-HDEFDISKLRYHKIV 417


>gi|148971379|gb|ABR20227.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 434

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 198/438 (45%), Positives = 270/438 (61%), Gaps = 21/438 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF++K YK++GGLHGVGV VVNALSS L   +K+   +Y  +F  G   
Sbjct: 1   EVIMTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSSRLTAIVKKGNEVYFETFRQGAPV 60

Query: 157 NPLVVTGSAGND-----------------TGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
             L    ++                     GT + F P ++IF   DF+Y TL  R+R+L
Sbjct: 61  TKLASMKTSEFTKNPPEDMKNVSIQLEKSHGTIIWFYPDTEIFETVDFSYSTLLERIRDL 120

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           +FLN  + I++ D+R+ +   +    +GG+ AFV YL      + + PI  +   +N  +
Sbjct: 121 AFLNPGISITIEDQRTDQKETLHF--EGGLSAFVEYLGEGYNSVHKEPISNKAELENGIV 178

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           + A  +N G  E++  F NNI   +GGTH++G R+ L+R I  Y  K+    K   ++ G
Sbjct: 179 EFAFLYNTGVSESIESFVNNINTIEGGTHVAGFRAGLSRAIQDYA-KNKNMVKGVETITG 237

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           +D REG  +VL IK+       QTK KL +SE R +V+S     L  + E +P  A +IV
Sbjct: 238 EDVREGIVAVLHIKIAGTAVWGQTKSKLGNSEARGMVQSVTETYLREYFESYPNIADLIV 297

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           K+ L A+  R+A+R+ARDL RRK  L+   LPGKLADCS  D  ++EL++VEG+SAGG+A
Sbjct: 298 KRALAAAAAREASRKARDLVRRKSALESGGLPGKLADCSSNDSTRTELYIVEGNSAGGTA 357

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQ R+R+ QAILPLRGKILNVE+A   K L +  I  LITA+GT I +D  D+ KLRY K
Sbjct: 358 KQARNRDFQAILPLRGKILNVEKATDVKTLENAIIRDLITAMGTNIKEDL-DLTKLRYGK 416

Query: 500 IIIMTDADVDGAHIRTLL 517
           IIIMTDADVDG+HIRTLL
Sbjct: 417 IIIMTDADVDGSHIRTLL 434


>gi|56675192|emb|CAI34898.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 371

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 218/374 (58%), Positives = 281/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLREL FLN  V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELFFLNFRVFIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGD AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDXAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|153945749|ref|NP_035753.2| DNA topoisomerase 2-alpha [Mus musculus]
 gi|148684229|gb|EDL16176.1| topoisomerase (DNA) II alpha [Mus musculus]
          Length = 1528

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 133/664 (20%), Positives = 255/664 (38%), Gaps = 62/664 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 33  YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAA 92

Query: 54  DESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ +    ++ +NG+GIP   HK E I    +I  +L     ++ 
Sbjct: 93  DNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEHKVEKIYVPALIFGQLLTSSNYDD 152

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++++ +     +       + 
Sbjct: 153 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDMELKPFSGED 212

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++     V++ L                
Sbjct: 213 YTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNS---------LPV 263

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     + +++   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 264 KGFRSYVDLYLKDKVDETGNSLKVIHEQVNPRWEVCLTMSERGFQQI-SFVNSIATSKGG 322

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE 
Sbjct: 323 RHVDYVADQIVSKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKEN 379

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +            +++             + I+  V   + ++      +    +   + 
Sbjct: 380 MTLQAKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQIQL---NKKCSAVKHTKIK 435

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   R+  +  L L EGDSA      G    GR +    + PLRGKILNV 
Sbjct: 436 GIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVR 493

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+
Sbjct: 494 EASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLI 553

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCD 577
            F     PSL+ + FL     P+  +++ K           E++  +     +    +  
Sbjct: 554 NFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYK 613

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +     K   P       + A IS  F+ +   +    L + 
Sbjct: 614 GLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDAAISLAFSKKQVDDRKEWLTNF 667

Query: 638 LANR 641
           + +R
Sbjct: 668 MEDR 671


>gi|20387186|dbj|BAB91293.1| gyrase B [Streptomyces mobaraensis]
          Length = 399

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 186/401 (46%), Positives = 260/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALSS + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSSRVAVEVKTDGYRWTQDYKLGVPTAPLQQ-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + I+L D+R     E          
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTIALTDERPDHVDEEGKPLAVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I ++       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGELIHPTVISLEAEDKERQLSLEIAMQWNSQYTEGVYSFANIIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V + L+ WL+ +P+EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKAVYEHLTDWLDRNPIEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPAKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDIDKLRYHKIIL 399


>gi|38453807|dbj|BAD02204.1| DNA topoisomerase II [Arthroderma persicolor]
          Length = 1086

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 142/682 (20%), Positives = 249/682 (36%), Gaps = 49/682 (7%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NGRGIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +          +++++ N +          +  D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSSKKKKFKLTWTNNMSTMGKAKITESKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T+VTF P    F +   + D    ++ R+ +++    +  + L   R P           
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTA-VKLNGTRIPIKSFKKYMEMY 239

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                 +      +        I     +   ++    +DG  + V  F N+I    GGT
Sbjct: 240 TK----AIKTERGEDPTSDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGT 294

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++ +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L
Sbjct: 295 HVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +   +   +  V+D     + +  +   I+      A  +       R        L  
Sbjct: 352 TTRASQFGSKCIVSDEFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTD 411

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERAR 464
           A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV  A 
Sbjct: 412 ANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDAS 465

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +    
Sbjct: 466 VDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVA 525

Query: 525 MPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            P+L+   GFL     P+  + +G        +         +            K    
Sbjct: 526 FPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKETHAHDKKWQKKYYK 585

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                +  D  +    L K     H     E  +I   F+ +   E       +      
Sbjct: 586 GLGTSSTEDAQIYFQDLDKHLKEFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTY 644

Query: 644 FIAEKSEKSWHGSINNSDILVK 665
                 + ++   IN   IL  
Sbjct: 645 LDHSTDQITYTDFINKELILFS 666


>gi|19909637|dbj|BAB87014.1| DNA gyrase subunit B [Rubrobacter radiotolerans]
          Length = 381

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 186/381 (48%), Positives = 256/381 (67%), Gaps = 6/381 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTG 170
           +YKVSGGLHGVG SVVNALS WL++ IKR+G ++   +  G     L           TG
Sbjct: 1   AYKVSGGLHGVGASVVNALSEWLEIEIKRDGYVWTQRYERGFPKGELERGRKMKKDEGTG 60

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T + + P  +IF    D +YDTL  R RE +FLN  ++I L+D+R  E RE+T  Y GGI
Sbjct: 61  TTIRWRPDGEIFKEGLDLSYDTLSRRFRESAFLNRGLRIKLVDER-EEGREVTYQYDGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE-NVLCFTNNIPQKDGGTH 288
           + FV++++  K P+ +S   +    +   +++A++WNDG+H  +V  F NNI   +GGTH
Sbjct: 120 KDFVAHINESKNPIHKSVFFLHAEEEAGDVEVALQWNDGFHRDSVFTFANNINTHEGGTH 179

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           LSG RSALTR +  Y  +    K+    +IGDD REG  +V+S+K+ +P+F  QTK KL 
Sbjct: 180 LSGFRSALTRTVNDYARQKGFLKEKDEPMIGDDIREGLAAVISVKVSEPQFEGQTKTKLG 239

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E+R +VE+  N  L+ + EE+P EAKII+ KVL A+ VR AAR+ RD T RKG L+ +
Sbjct: 240 NTEIRGLVETNTNRYLAEFFEENPAEAKIIINKVLQAARVRQAARKVRD-TMRKGYLESS 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADCS +DP +SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+A  +K+
Sbjct: 299 TLPGKLADCSSKDPARSELYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKANINKV 358

Query: 469 LSSQEIGTLITALGTGIGQDS 489
           LS+ EI  +I+A+G  +G   
Sbjct: 359 LSNVEIQAMISAVGASVGDQF 379


>gi|66474581|gb|AAY46860.1| GyrB [Aeromonas sp. 1m]
 gi|66474591|gb|AAY46865.1| GyrB [Aeromonas sp. 19m]
          Length = 371

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 221/374 (59%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPHAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +  +       +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TAIHPNVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|19912055|dbj|BAB88339.1| DNA gyrase subunit B [Cytophaga sp. I-2029]
          Length = 391

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 187/392 (47%), Positives = 257/392 (65%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALSS LK  + R+G I+E  +  G    P+   G +  +TGT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSSHLKATVYRDGKIWEQEYERGKTLYPVKSVGESK-ETGTVVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
           +P   IF+    ++Y+TL +R+RELS+LN  V I+L DKR      E    T     G++
Sbjct: 60  IPDDTIFTQTTEYSYETLANRMRELSYLNKGVTITLTDKRHKDDKGEFVSETFHSDEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD +++PL+QS I ++G ++ I +++AM +N GY EN+  + NNI   +GGTHLS
Sbjct: 120 EFIKFLDGNREPLIQSVISMEGEKNGIPVEVAMVYNTGYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTTTLKKYADNSGMLDKLKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEEHP +AK IV+KV  A+  R AA +AR++ +RK  + +  L
Sbjct: 240 EVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMSVGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +        +KLRYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLDKLRYH 391


>gi|148536428|gb|ABQ85766.1| DNA gyrase subunit B [Aliivibrio fischeri]
          Length = 370

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 220/371 (59%), Positives = 286/371 (77%), Gaps = 3/371 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  ++L I R G I++  + +G  + PL V G   + TGT++ F PS
Sbjct: 1   GLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+   F Y+ L  RLRELSFLNS V I L D R  E +     Y+GGI+AFV +L+R
Sbjct: 60  EETFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFMYEGGIQAFVQHLNR 118

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ Q        R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALT
Sbjct: 119 NKTPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALT 178

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 179 RTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 238

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC
Sbjct: 239 SAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADC 298

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTL
Sbjct: 299 QEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTL 358

Query: 478 ITALGTGIGQD 488
           ITALG GIG+D
Sbjct: 359 ITALGCGIGRD 369


>gi|19909699|dbj|BAB87045.1| DNA gyrase subunit B [Microcystis viridis NIES-103]
          Length = 332

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 144/319 (45%), Positives = 212/319 (66%), Gaps = 2/319 (0%)

Query: 71  DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNA 130
           DGS +V+D+GRGIPTD+H   G SA E ++T LHAGGKF    YKVSGGLHGVG+SVVNA
Sbjct: 1   DGSVSVTDDGRGIPTDVHPTTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGISVVNA 60

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNY 189
           LS+W+ + + R+  ++   +  GI    LV + S    TGT V FLP ++IFS   +F+Y
Sbjct: 61  LSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGIEFDY 120

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
            TL  RLREL++LN+ V+I+  D R  EP   T  Y+GGI+ +V+Y+ R K+ L +  I 
Sbjct: 121 STLSGRLRELAYLNAGVKITFSDYRPEEPHIETYCYEGGIKEYVAYMCREKETLHKDIIY 180

Query: 250 IQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
           + G +  I+I++A +W  D Y +N+L F NNI   DGGTHL GL++ LTR + +   K  
Sbjct: 181 VSGEKTGINIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVARKRN 240

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K+++ ++ G++ REG T+V+S+K+P+P F  QTK KL ++EVR +V+S V + L+ +L
Sbjct: 241 KIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETLNEYL 300

Query: 369 EEHPLEAKIIVKKVLDASM 387
           E++P  A  I++K + A  
Sbjct: 301 EQNPQVADTIIEKAVQAYK 319


>gi|259149274|emb|CAY82516.1| Top2p [Saccharomyces cerevisiae EC1118]
          Length = 1428

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 143/727 (19%), Positives = 262/727 (36%), Gaps = 76/727 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +D  Q +  L+ + KRP  YIG  + +                       GL  +  E+L
Sbjct: 9   SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEIL 68

Query: 50  DNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I V ++  + +  V ++G+GIP ++H +E I   E+I   L    
Sbjct: 69  VNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 128

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFINGILDN-PLVVTG 163
            ++    KV+GG +G G  + N  S+   L    +   G  Y   + N +    P  +T 
Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENNMSICHPPKITS 187

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                + T+VTF P    F +++ + D    ++ R+ +++     + + L  K       
Sbjct: 188 YKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNGKSLKIRNF 247

Query: 221 ITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y   +E      +            I   R N   ++A   +D   + +  F N
Sbjct: 248 KNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISFQQI-SFVN 306

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           +I    GGTH++ +   + ++           KK K+SV     +      ++  + +P 
Sbjct: 307 SIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMFIFINCLIENPA 361

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F+SQTKE+L +      V+ F +         + +    +  ++ + +   +     +  
Sbjct: 362 FTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSD 416

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPL 453
             RK  +              ++  K  L L EGDSA      G A  GR        PL
Sbjct: 417 GTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPL 474

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++IMTD D DG+HI
Sbjct: 475 RGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHI 534

Query: 514 RTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           + L++ F     P L+   GFL     P+  ++  K  +      ++ DY   +      
Sbjct: 535 KGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHK 594

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
             +           L   +                +         I           I++
Sbjct: 595 FTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHLKIFHSLQGNDKDYIDL 640

Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI 692
           + + K A+       + E            ++    + +     +    I    +   R 
Sbjct: 641 AFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDFINKELILFSLADNIRS 691

Query: 693 FSNRIEE 699
             N ++ 
Sbjct: 692 IPNVLDG 698


>gi|6094496|sp|O24308|TOP2_PEA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II; AltName: Full=PsTopII
 gi|2330651|emb|CAA74891.1| topoisomerase II [Pisum sativum]
          Length = 1462

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 135/695 (19%), Positives = 251/695 (36%), Gaps = 71/695 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            +  Q    L+ +  RP  Y+G  +  +                    GL+ +  E+L N
Sbjct: 20  EEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWVYENDEMVHRAVSYVPGLYKIFDEILVN 79

Query: 52  AIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + VT++ +  + +V +NG G+P ++H+EE +   E+I   L  
Sbjct: 80  AADNKQRDPSM----DSLKVTIDPEANTVSVYNNGDGVPVEIHQEEKVYVPELIFGHLLT 135

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-LDNPLVV 161
              ++    K +GG +G G  + N  S+   +    +G     Y+  F N +      V+
Sbjct: 136 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGRRLKKYKQVFSNNMGTKCEPVI 194

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEP 218
           T    ++  T+VTF P  + F +     D    ++ R+ +++            K     
Sbjct: 195 TKCKASENWTKVTFKPDLEKFKMAYLEEDVVALMKKRVLDMAGCFGK-----TVKVELNG 249

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
             I                   KP+    I     +     ++ +  +DG  + V  F N
Sbjct: 250 TLIRFKSFRDYADLFLKCAEKSKPMPLPRIHA---KVGDRWEICISLSDGQFQQV-SFVN 305

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           +I    GGTH+  + + +T  I + V K         +V     +      ++  + +P 
Sbjct: 306 SIATIKGGTHVDYITNQITTYIMNKVNKKK----KDANVKAHTVKNHLWVFVNSLIDNPA 361

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F SQTKE L + +      SF +           +E   IV  +L  +  + +    +  
Sbjct: 362 FDSQTKETLTTRQA-----SFGSKCDVPESMLKDVEKSGIVDTLLSWADFKQSKDLKKTD 416

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRG 455
             +   L          +   R+ +K  L L EGDSA   A  G S   R++  + PLRG
Sbjct: 417 GTKTQRLRGC-KAEDANEAGGRNSEKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRG 475

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNV  A   +++ ++EI  +   LG    ++  ++  LRY  ++IM D D DG+HI+ 
Sbjct: 476 KLLNVREASSKQIMDNEEIQNIKKILGLQQNKEYTNVKSLRYGHLMIMADQDHDGSHIKG 535

Query: 516 LLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           LL+ F     PSL+      +    P+   +               +    +  +     
Sbjct: 536 LLINFIHSFWPSLLKVPSFLVEFTTPVIRASHPNKTITSFYSMPEYEAWKERLGNSATSW 595

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
                  +  +  +          +   D   +      +  +          ++     
Sbjct: 596 KIKYYKGLGTSTPQEG-------REYFSDLGRHRKDFIWDDELDGNAIELAFSKKKAEGR 648

Query: 635 ASKLANRLNFIAEKSEK---SWHGSINNSDILVKR 666
              + N         E    ++   +N   IL  R
Sbjct: 649 KIWMRNFEPGTCRDHEAKLINYKDFVNKELILFSR 683


>gi|20387182|dbj|BAB91291.1| gyrase B [Streptomyces mashuensis]
          Length = 399

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 186/401 (46%), Positives = 257/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + IK +G+ +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEIKTDGHRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + +SL D+R     E          
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTLSLTDERPDHVDEEGKPLSVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R    +  + I         ++S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGDLVHPTVIAFDAEDKERSLSLEIAMQWNTQYTEGVYSFANIIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKAVYEELTDWLDRNPNEAADIIRKAIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKLADC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLADCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARVDKILQNQEIQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|226528042|dbj|BAH56563.1| DNA gyrase subunit B [Pseudomonas sp. HT-3]
          Length = 376

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 215/379 (56%), Positives = 289/379 (76%), Gaps = 4/379 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAAVGDT-DGTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F++D L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV YL+
Sbjct: 60  SEETFANIHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLN 117

Query: 238 RHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K  + Q     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSAL
Sbjct: 118 TNKTVVNQVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRHLNNYIESEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+SSQE+GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVERARFDRMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDINKL 495
           LITALG GIG++ ++I+KL
Sbjct: 358 LITALGCGIGREEYNIDKL 376


>gi|66474553|gb|AAY46846.1| GyrB [Aeromonas sp. A1-Manipal]
          Length = 371

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 222/374 (59%), Positives = 284/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSV+NALS  L L I+R G++YE ++  G    PL   G A   TGTEV F PS  
Sbjct: 1   HGVGVSVMNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|45580834|emb|CAG14994.1| DNA gyrase subunit beta [Aeromonas simiae]
 gi|45580836|emb|CAG14995.1| DNA gyrase subunit beta [Aeromonas simiae]
          Length = 372

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 225/375 (60%), Positives = 287/375 (76%), Gaps = 4/375 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+R+G++YE ++  G    PL   G A   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+TL  RLRELSFLNS V I L D+R  + REI   Y+GGI+AFV YL++ K
Sbjct: 60  IFSDTLFHYETLAKRLRELSFLNSGVSIVLSDER--DGREINFCYEGGIKAFVEYLNQSK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WNDGY E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFSTEQDGIGVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
            +Y++K   SKK K S   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 NTYMDKEDYSKKAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + ++ +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 238 MGEKMAEFLLENPSDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 298 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 357

Query: 480 ALGTGIGQDSFDINK 494
           ALG GIG+D ++ +K
Sbjct: 358 ALGCGIGRDEYNPDK 372


>gi|267150|sp|Q01320|TOP2A_MOUSE RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|220616|dbj|BAA02076.1| DNA topoisomerase II [Mus musculus]
          Length = 1528

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 132/664 (19%), Positives = 255/664 (38%), Gaps = 62/664 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 33  YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAA 92

Query: 54  DESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ +    ++ +NG+GIP   HK E I    +I  +L     ++ 
Sbjct: 93  DNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEHKVEKIYVPALIFGQLLTSSNYDD 152

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +    +++ ++++ +     +       + 
Sbjct: 153 DEKKVTGGRNGYGAKLCNIFSTKFTVETASRAYKKMFKQTWMDNMGRAGDMELKPFSGED 212

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++     V++ L            M   
Sbjct: 213 YTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGN---------MLPV 263

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     + +++   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 264 KGFRSYVDLYLKDKVDETGNSLKVIHEQVNPRWEVCLTMSERGFQQI-SFVNSIATSKGG 322

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE 
Sbjct: 323 RHVDYVADQIVSKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKEN 379

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +            +++             + I+  V   + ++      +    +   + 
Sbjct: 380 MTLQAKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQIQL---NKKCSAVKHTKIK 435

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   R+  +  L L EGDSA      G    GR +    + PLRGKILNV 
Sbjct: 436 GIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVR 493

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+
Sbjct: 494 EASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLI 553

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCD 577
            F     PSL+ + FL     P+  +++ K           E++  +     +    +  
Sbjct: 554 NFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYK 613

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +     K   P       + A IS  F+ +   +    L + 
Sbjct: 614 GLGTSTSKEAKEYFADMKRHRIQFKYPGPE------DDAAISLAFSKKQVDDRKEWLTNF 667

Query: 638 LANR 641
           + +R
Sbjct: 668 MEDR 671


>gi|307211209|gb|EFN87409.1| DNA topoisomerase 2 [Harpegnathos saltator]
          Length = 1492

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 145/747 (19%), Positives = 269/747 (36%), Gaps = 80/747 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +  +                      GL+ +  E+L NA
Sbjct: 23  YQKKSQLEHILLRPDTYIGSVEPVTEMMWIFDKEKDMMVQKDIKYVPGLYKIFDEILVNA 82

Query: 53  IDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        D+I + ++  + + +V +NG+GIP  +HKEE +    +I   L     ++
Sbjct: 83  ADNKQRDPKMDMIKIDIDSENNTISVWNNGKGIPVVIHKEENMYVPTMIFGHLLTSSNYD 142

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE----MSFINGILDNPLVVTGSAG 166
            +  KV+GG +G G  + N  S    +        Y      ++ N +            
Sbjct: 143 DEEEKVTGGRNGYGAKLCNIFSHRFTVETAT--KEYRKSLKQTWGNNMGKASEPRIKEYH 200

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            +  T+VTF P    F +Q  + D    +  R  +++  +  V++ L   R P       
Sbjct: 201 GEDFTKVTFSPDLSKFKMQSLDEDIVALMSRRAYDVAASSKGVKVYLNGTRVP------- 253

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
                 + ++ +  + K+  + +P++I         ++A+  +D      + F N+I   
Sbjct: 254 --VKNFKDYIDFYIKGKEDDVGNPLKIIYENCGPRWEVAITLSDK-GFQQMSFVNSIATT 310

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG H+  +   + +Q+   ++K   +      +     +      ++  + +P F SQT
Sbjct: 311 KGGRHVDHVTELIVKQLIETLKKKNKAGVA---IKPFQIKNHLWIFINCLINNPTFDSQT 367

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE +         +  + D   A + +       IV+ VL  +  +  ++  +   + K 
Sbjct: 368 KENMTLQAKSFGSKCTLTDKFIANITKIG-----IVEAVLTWAKFKADSQLQKLGPKSKQ 422

Query: 404 V-LDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKI 457
             L          D       +  L L EGDSA      G A  GR +    I PLRGK+
Sbjct: 423 RKLQGIPKLEDANDAGTGKSLECTLILTEGDSAKTMAVSGIASIGRDK--YGIFPLRGKM 480

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIR 514
           LNV  A   ++L + EI  LI  LG    +     +    LRY K++IMTD D DG+HI+
Sbjct: 481 LNVREATHKQILENAEINNLIKILGLQYKKKYETRDDLKTLRYGKMMIMTDQDQDGSHIK 540

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
            LL+ F     PSL+   F+     P+   T+G            E +          ++
Sbjct: 541 GLLINFIHHNWPSLLKLNFIEEFITPIVKATKGNQQLSFFSLPEFEMWKKETDNFHTYKI 600

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
                   S          A +  +  ++   +  +   +             ++     
Sbjct: 601 KYYKGLGTS---------TAKEAKEYFENMARHRIRFRYDGEQDDQNIIMAFSKKCVDQR 651

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
              L N +N    + E        +   L ++  R V     +    +        R   
Sbjct: 652 KDWLMNHMNETKRRKEIGL-----SERYLYEKDTRAVSFSDFINVELVLYSNYDNVRSIP 706

Query: 695 NRIEENYLTILSLI----CNGDKIKIT 717
           N I+        ++       D+ ++ 
Sbjct: 707 NMIDGFKPGQRKVMFTCLKRNDRREVK 733


>gi|207678290|gb|ACI25157.1| DNA gyrase B [Phaeobacter sp. M21-2.1]
          Length = 368

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 227/367 (61%), Positives = 284/367 (77%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS WL+LRI R+G  +   F  G     L V G  G+ TGTEV FL S++ 
Sbjct: 1   GVGVSVVNALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFLASTET 60

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS  ++ ++TL+ RLREL+FLNS V+I LID+R  E  E+ +FY+GG++ FV YLDR K 
Sbjct: 61  FSNLEYLFETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKS 120

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+M++PI I G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I 
Sbjct: 121 PVMEAPIYITGDRDEIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTIN 180

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN
Sbjct: 181 NYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 240

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ W EE+P +AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+D
Sbjct: 241 EKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKD 300

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P K+E+FLVEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L+ AL
Sbjct: 301 PSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVMAL 360

Query: 482 GTGIGQD 488
           GTGIG+D
Sbjct: 361 GTGIGRD 367


>gi|20387146|dbj|BAB91273.1| gyrase B [Streptomyces ehimensis]
 gi|20387180|dbj|BAB91290.1| gyrase B [Streptomyces luteoverticillatus]
          Length = 399

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL       ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFHWTQDYKLGVPTAPLQQ-NEPTDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLAVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  S I  +       +S++++M+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVVHPSVIAFEAEDKERMLSLEVSMQWNTQYTEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + EI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNTEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|66474579|gb|AAY46859.1| GyrB [Aeromonas sp. RK 70363]
          Length = 372

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 217/374 (58%), Positives = 282/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGV  SVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVAPSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|195397652|ref|XP_002057442.1| GJ18099 [Drosophila virilis]
 gi|194141096|gb|EDW57515.1| GJ18099 [Drosophila virilis]
          Length = 1445

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 131/742 (17%), Positives = 265/742 (35%), Gaps = 71/742 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 15  YQKKSQLEHILLRPDSYIGSVEFTKELMWVHDVEKNRMVQREISFVPGLYKIFDEILVNA 74

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I V ++ +    ++ +NG+GIP  +HK+E +    +I   L     +N
Sbjct: 75  ADNKQRDKTMNTIKVDIDPERNLVSIWNNGQGIPVTMHKDENMYVPTMIFGHLLTSSNYN 134

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLR--IKREGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   +    ++    ++ ++ N +      V       
Sbjct: 135 DDEKKVTGGRNGYGAKLCNIFSNSFTVETATRKYRKCFKQTWGNNMGKAGDPVISDFNGT 194

Query: 169 TGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             T +TF P    F ++  + D    +  R  +++     V + L   + P         
Sbjct: 195 DYTRITFSPDLTKFKMESLDNDIVALMSRRAYDVAASTKGVSVFLNGTKVP--------- 245

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             G + ++    ++       P+++         ++A   +D   + V  F N+I    G
Sbjct: 246 VKGFKDYIDLFIKNTDDDAGQPMKVVYEACGDRWEIACCPSDRGFQQV-SFVNSIATTKG 304

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G H+  +   + +Q+   ++K   +     S+     R      ++  + +P F SQTKE
Sbjct: 305 GRHVDHVVDNVIKQLIEVLKKKNKNG---ISIKPFQVRNHLWIFVNCLIENPTFDSQTKE 361

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
            +         +  +++   + + +       IV+ VL  +  +     A+   ++   +
Sbjct: 362 NMTLQAKSFGSKCVLSEKFISNVSKAG-----IVESVLAWAKFKAQNDIAKTGGKKSSKI 416

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVER 462
                     +   ++     L L EGDSA   A  G     R    + PLRGK+LNV  
Sbjct: 417 KGIPKLEDANEAGTKNSIMCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNVRE 476

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLT 519
           A F ++  + EI  L   +G    +     +    LRY K++IMTD D DG+HI+ LL+ 
Sbjct: 477 ATFKQLTENAEINNLCKIIGLQYKKKYLTTDDLKTLRYGKVMIMTDQDQDGSHIKGLLIN 536

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           F     P L+   FL     P+   ++             E++ ++        +     
Sbjct: 537 FIHTNWPELLRLPFLEEFITPIVKASKKNEEISFYSLPEFEEWKMDTPNHHTYNIKYYKG 596

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
              S          + +  +  +D   +      +  V          ++   S  + L 
Sbjct: 597 LGTS---------TSKEAKEYFQDMDRHRILFKYDGQVDDDNIVMAFAKKHVESRKTWLT 647

Query: 640 NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
           N ++ +  + +            L  +  + V     +    +    +  +R   + ++ 
Sbjct: 648 NHMDEVKRRRQLGL-----PERYLYTKGTKHVSYSDFINLELVLFSNADNERSIPSLVDG 702

Query: 700 NYLTILSLI----CNGDKIKIT 717
                  ++       DK ++ 
Sbjct: 703 LKPGQRKVMFTCFKRNDKREVK 724


>gi|66474597|gb|AAY46868.1| GyrB [Aeromonas veronii]
          Length = 372

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 225/375 (60%), Positives = 286/375 (76%), Gaps = 4/375 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+R+G++YE ++  G    PL   G A   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+TL  RLRELSFLNS V I L D+R  + REI   Y+GGI+AFV YL++ K
Sbjct: 60  IFSDTLFHYETLAKRLRELSFLNSGVSIVLSDER--DGREINFCYEGGIKAFVEYLNQSK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+           D I +++AM+WNDGY E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFSTEHDGIGVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
            +Y++K   SKK K S   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 NTYMDKEDYSKKAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + ++ +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 238 MGEKMAEFLLENPSDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 298 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 357

Query: 480 ALGTGIGQDSFDINK 494
           ALG GIG+D ++ +K
Sbjct: 358 ALGCGIGRDEYNPDK 372


>gi|2196848|gb|AAB80841.1| DNA gyrase beta-subunit [Shewanella sp. SP-3]
          Length = 419

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 218/394 (55%), Positives = 292/394 (74%), Gaps = 4/394 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R+G ++E  + +G+ D P+   G A   TGTE+ F PS   FS 
Sbjct: 29  VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEQTFSD 87

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AF+ YL+R+K P+ 
Sbjct: 88  VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFLDYLNRNKTPVN 145

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 146 KDVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNY 205

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 206 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEK 265

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA   R+AAR+AR++  RKG LD+  LPGKLADC E+DP 
Sbjct: 266 LNDYLLENPADAKLIVGKIVDAVRAREAARKAREMKLRKGALDLGGLPGKLADCQEKDPG 325

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGD AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML SQE+ TLITALG 
Sbjct: 326 LSEIYIVEGDFAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLFSQEVATLITALGC 385

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           GIG   + +      + +IMTDADVDG+HI TLL
Sbjct: 386 GIGCGDYTLQHTGGEEEVIMTDADVDGSHILTLL 419


>gi|20387122|dbj|BAB91261.1| gyrase B [Streptomyces aureoversilis]
 gi|20387208|dbj|BAB91304.1| gyrase B [Streptomyces rectiverticillatus]
          Length = 399

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 184/401 (45%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQQ-NEATDEHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLNVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  S I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVIHPSVIDFEAEDKERMLSVEVAMQWNSQYTEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P E   I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEGADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|68445364|dbj|BAE03183.1| DNA gyrase subunit B [actinobacterium Aac-99]
          Length = 399

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 177/401 (44%), Positives = 256/401 (63%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG SVVNALS+ L + +K +G+++   +I G+   PL+  G A  +TG
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYIRGVPTAPLLK-GEATEETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T V F    +IF    +N++TL  R +E++FLN  V I LID+R     E          
Sbjct: 60  TTVAFWADDEIFETTTYNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNPRSVRFK 119

Query: 225 YKGGIEAFVSYLDRHK-KPLMQSPIRI--QGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV +++  K + +    I    +     IS ++A++WN+ Y E+V  F N I 
Sbjct: 120 YDGGIADFVRHINAAKGEMVHPQVIEFGSEDKERKISAEVALQWNNQYSESVYTFANVIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSA+T  +  Y +     K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSAMTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + ++ W + +P EA+ I++K + A+  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEARTFVQKLTYEAMADWFDRNPNEARDIIRKSIQAATARIAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKL+DC   +P + E+F+VEGDSAGGSAKQGR    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLSDCQSTNPAECEIFVVEGDSAGGSAKQGRDPRVQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+ALGTGI  D FDI+KLRYHKI++
Sbjct: 360 KARIDKVLQNTEVQGLISALGTGI-HDDFDISKLRYHKIVL 399


>gi|68445362|dbj|BAE03182.1| DNA gyrase subunit B [actinobacterium Aac-9]
          Length = 399

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 177/401 (44%), Positives = 257/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG SVVNALS+ L + +K +G+++   +I G+   PL+  G A  +TG
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYIRGVPTAPLLK-GEATEETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T V F    +IF    +N++TL  R +E++FLN  V I LID+R     E          
Sbjct: 60  TTVAFWADDEIFETTTYNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNPRSVRFK 119

Query: 225 YKGGIEAFVSYLDRHK-KPLMQSPIRI--QGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV +++  K + +    I    +     IS ++A++WN+ Y E+V  F N I 
Sbjct: 120 YDGGIADFVRHINAAKGEMVHPQVIEFGSEDKERKISAEVALQWNNQYSESVYTFANVIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSA+T  +  Y +     K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSAMTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + ++ W + +P EA+ I++K++ A+  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEARTFVQKLTYEAMADWFDRNPNEARDIIRKLIQAATARIAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKL+DC   +P + E+F+VEGDSAGGSAKQGR    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLSDCQSTNPAECEIFVVEGDSAGGSAKQGRDPRVQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+ALGTGI  D FDI+KLRYHKI++
Sbjct: 360 KARIDKVLQNTEVQGLISALGTGI-HDDFDISKLRYHKIVL 399


>gi|19909701|dbj|BAB87046.1| DNA gyrase subunit B [Microcystis ichthyoblabe TAC48]
          Length = 333

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 155/333 (46%), Positives = 225/333 (67%), Gaps = 2/333 (0%)

Query: 71  DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNA 130
           DGS +V+D+GRGIPTD+H   G SA E ++T LHAGGKF    YKVSGGLHGVG+SVVNA
Sbjct: 1   DGSVSVTDDGRGIPTDVHPTTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGISVVNA 60

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNY 189
           LS+W+ + + R+  ++   +  GI    LV + S    TGT V FLP ++IFS   +F+Y
Sbjct: 61  LSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGIEFDY 120

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
            TL  RLREL++LN+ V+I+  D R  EP   T  Y+GGI+ +V+Y+ R K+ L +  I 
Sbjct: 121 STLSGRLRELAYLNAGVKITFSDYRPEEPHIETYCYEGGIKEYVAYMCREKETLHKDIIY 180

Query: 250 IQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
           + G ++ I+I++A +W  D Y +N+L F NNI   DGGTHL GL++ LTR + + V K  
Sbjct: 181 VSGEKNGINIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVVCKRN 240

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K+++ ++ G++ REG T+V+S+K+P+P F  QTK KL ++EVR +V+S V + L+ +L
Sbjct: 241 KIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETLNEYL 300

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           E++P  A  I++K + A    +AARRARDL RR
Sbjct: 301 EQNPQVADTIIEKAVQAYKAAEAARRARDLVRR 333


>gi|21238921|dbj|BAB96566.1| DNA gyrase subunit B [Microbacterium imperiale]
          Length = 409

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 178/411 (43%), Positives = 257/411 (62%), Gaps = 21/411 (5%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI-NGILDNPLVVTGSAGNDT 169
              Y VSGGLHGVG SVVNALS+ L + ++R+G+++  SF   G+   PL   G A ++T
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSTRLDVEVRRQGHVWRQSFRTGGVPQAPLEK-GEATDET 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR---------- 219
           GT +TF P  DIF   +F+YDTL+ R ++ +FLN  ++I+L D+R               
Sbjct: 60  GTTITFWPDPDIFETVEFDYDTLRTRFQQQAFLNKGLRIALDDQRPDSAYVVDLEDGTSE 119

Query: 220 ----EITMFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHE 271
                    Y+ G+  +V Y    R  + +    I ++      +IS++LAM+W   Y E
Sbjct: 120 NRRPHDDFLYERGLVDYVEYLNKLRKTEVVNDEIIEVESEDTVRHISLELAMQWTTSYTE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           NV  F N I   +GGTH  G R+ALT ++ +Y  +    K+   ++ GDD REG T+V+S
Sbjct: 180 NVFTFANTINTHEGGTHEEGFRAALTTKVNAYAREKGLLKEKDDNLTGDDIREGLTAVIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++E ++ V+  V D L+ WL+ +P +AK ++ K +DA+  R A
Sbjct: 240 VKLSEPQFEGQTKTKLGNTEAKAFVQKIVGDQLTDWLDRNPAQAKRVIMKAVDAATARLA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR+  RRK V + AS+P KL DC+ +DP  SE+FLVEGDSAGGSA +GR  E QAIL
Sbjct: 300 ARKARETARRKSVFESASMPDKLKDCTSKDPSISEIFLVEGDSAGGSAVRGRDPETQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            LRGK+LNVE+AR D+ L + EI  +I+A GTGIG+D F + K RYHKI++
Sbjct: 360 SLRGKVLNVEKARLDRALGNNEIQAIISAFGTGIGED-FSVEKARYHKIVL 409


>gi|38224481|gb|AAR14141.1| DNA gyrase B subunit [Fusobacterium varium]
          Length = 401

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 172/402 (42%), Positives = 250/402 (62%), Gaps = 4/402 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS W  + +K +G I+   +  G+ +  +   G    + G
Sbjct: 2   NDNYKVSGGLHGVGVSVVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTT-EHG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F    +IF    ++Y+TL++RL+EL++LN  ++I L D R    ++    ++GGI 
Sbjct: 61  TTVRFKADHEIFETLIYDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKKEEFKFEGGIV 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+  +    + L+  PI + G  DN+++D+A  +     E +  F NNI   +G     
Sbjct: 121 DFLKEITEETEKLIPEPIYMTGEVDNVAVDIAFLYTVNQSEIIYSFVNNINTHEGRYPCK 180

Query: 291 -GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG-FTSVLSIKMPDPRFSSQTKEKLV 348
             LR+ALTR I    +    S++ +     +  +E  F   + +K+P P+F  QTK KL 
Sbjct: 181 WDLRTALTRVINDGRKSFTVSERKRWKTSKEMIKEKEFQQFVQVKVPQPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEV  +V + V   L   LE++P + K   ++ +++   R+AA++AR+L  RK VL++ 
Sbjct: 241 NSEVTGIVSTLVGTNLKIVLEDNPNDPKNNNRENMNSKKAREAAQKARELVLRKSVLEVG 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADCS ++P + E+++VEGDSAGGSAKQGR R +QAILPLRGKILNVE+A   K 
Sbjct: 301 SLPGKLADCSSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKS 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           L + E+  +ITA GT IG DSF+I KLRY KII+MTDADVDG
Sbjct: 361 LENNEVRAMITAFGTSIG-DSFNIEKLRYGKIILMTDADVDG 401


>gi|203366790|gb|ACH98386.1| DNA gyrase B subunit [Geitlerinema sp. Flo1]
          Length = 370

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 164/369 (44%), Positives = 240/369 (65%), Gaps = 8/369 (2%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN+IDE+L GY   I + +N DGS +V+D+GRGIPT++H + G SA E ++T LHAGGK
Sbjct: 1   VDNSIDEALAGYCTHIEIDINADGSVSVTDDGRGIPTEVHSKTGRSALETVLTVLHAGGK 60

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-VTGSAGN 167
           F    YKVSGGLHGVGVSVVNALS W+++ + RE  ++   +  G     L         
Sbjct: 61  FGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWREKKVHTQRYERGKPVEDLKTKPSPDKK 120

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREI 221
            TGT V FLP  DIF+   +F+Y T+  R+REL++LN+ V+I+  D R     + EPR  
Sbjct: 121 RTGTSVRFLPDRDIFTTGIEFDYTTIAGRIRELAYLNAGVRITFTDNRLEFLGTTEPRIE 180

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNI 280
           T  Y+GGI  +V Y++R K+P+ +  I + G R+N+ +++A++W+ D Y +N+L F NNI
Sbjct: 181 TYCYEGGIREYVQYMNRDKEPIHEEIIYVSGERNNVQVEVALQWSIDAYSDNLLGFANNI 240

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              DGGTHL GL++ LTR + +   K    K+   ++ G++ REG T V+S+K+PDP F 
Sbjct: 241 RTVDGGTHLEGLKTVLTRTMNNIARKRNKLKEGASNLGGENVREGLTGVISVKVPDPEFE 300

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EVR +V+S V + L+ +LE  P  A  I++K + A    +AARRAR+L R
Sbjct: 301 GQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPNVADAILEKAIQAFNAAEAARRARELVR 360

Query: 401 RKGVLDIAS 409
           RK VL+ ++
Sbjct: 361 RKSVLESST 369


>gi|4996824|dbj|BAA78457.1| subunit B protein of DNA gyrase [bacterium rA3]
          Length = 323

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 160/327 (48%), Positives = 209/327 (63%), Gaps = 32/327 (9%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLH 88
           DT   +GLHH+++EV+DN+IDE+L GY D I VT++ DG  +V DNGRGIPT     D H
Sbjct: 1   DTSDGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGWLSVIDNGRGIPTGVKMDDKH 60

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
            E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNAL+ WLKL + R+G  YE+
Sbjct: 61  -EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALTVWLKLTVSRDGQRYEI 119

Query: 149 SFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHR 195
            F  G +             +P+ V G + ++ GT+V FLP  +IF     F Y+ L  R
Sbjct: 120 EFSRGHVQNRLIEVVDGSEVSPMHVAGES-DERGTKVHFLPDQEIFKDNYDFRYEILAKR 178

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLN+ V+I L D+R+ +         GG++ FV ++   KK L  +     GSR 
Sbjct: 179 LRELSFLNNGVRIRLKDERNGKE--DDFSGAGGVKGFVEFISGAKKVLHPTAFHAMGSRP 236

Query: 256 ----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                      I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E
Sbjct: 237 AETYGGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIE 296

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSI 332
           ++  +KK K  V GDD REG  SVLS+
Sbjct: 297 QNDLAKKAKVEVTGDDMREGLCSVLSV 323


>gi|15530000|gb|AAG01693.3| DNA gyrase subunit B [Aeromonas jandaei]
          Length = 371

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 217/374 (58%), Positives = 278/374 (74%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y   V CFTNNIP++D GT   G R+ALTR  
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQXGVYCFTNNIPKRDXGTQPGGFRTALTRTF 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y+EK   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NFYMEKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|320580632|gb|EFW94854.1| DNA topoisomerase II [Pichia angusta DL-1]
          Length = 1372

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 153/727 (21%), Positives = 257/727 (35%), Gaps = 87/727 (11%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           + N + SS  +D  Q L  L+ + KRP  YIG  +                         
Sbjct: 30  TTNGKKSS-ASDQYQKLSQLEHILKRPDTYIGSVEKIESEQWIYNEQTESMEKRTVNIVP 88

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAE 97
           GL  +  E+L NA D  +       I V ++ +    +V ++G+GIP ++H +E I   E
Sbjct: 89  GLFKIFDEILVNAADNKIRDPSMKKIDVKIDKENNVISVKNDGKGIPVEIHTKEQIYIPE 148

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI---YEMSFINGI 154
           +I   L     ++    KV+GG +G G  + N  S+   +R   + N    Y  ++ N +
Sbjct: 149 LIFGNLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSTEFTVRTA-DKNTQLLYTQTWRNNM 207

Query: 155 L-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISL 210
                  ++     +  TEV F P    F ++  + D    L+ R+ +L      V++SL
Sbjct: 208 SETGKPKISTMKKQEEYTEVIFKPDLSKFGMESLDDDILGVLRRRVYDLCGSVRGVKVSL 267

Query: 211 --------IDKRSPEPREITMFYKGG------IEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
                     K+  E     +  + G                   PL Q    I     N
Sbjct: 268 NGQQLKVHNFKQYVELYVKALEKEKGNLPAPVKTEDSEDGSLAPAPLSQPLPTIVHQVIN 327

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
              ++A   +DG    V  F N+I    GGTH+  + + L  +I   ++K   +   K  
Sbjct: 328 DRWEVAFSISDGTFNQV-SFVNSIATTAGGTHVELISNMLVTKIMEQIKKKSKTAIIKPI 386

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
                 +      ++  + +P F+SQTKE+L +           +      LE      K
Sbjct: 387 Q----IKNNMFLFVNCLIENPAFTSQTKEQLTT---------RASQFGGKKLELPDSFVK 433

Query: 377 I-----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
                 I++ V+D +         ++   RK  L              ++  K  L L E
Sbjct: 434 KVLASGILESVMDIAQANADKALKKNDGSRKSRLTGYPKLEDANKAGTKEGHKCTLILTE 493

Query: 432 GDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           GDSA      G A  GR        PLRGK+LNV  A  D+++ + EI  +   +G    
Sbjct: 494 GDSAKSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASTDQIMKNAEIQAIKQIMGLQHK 551

Query: 487 QDSF--DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYG 543
           +     +IN LRY  I+IM+D D DG+HI+ L++ F     P L+   GFL     P+  
Sbjct: 552 KRYDLSNINTLRYGHIMIMSDQDHDGSHIKGLIINFLETSFPGLLEIPGFLIEFITPIVK 611

Query: 544 I-----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           +               +    E++      +   +             L   + +     
Sbjct: 612 VTILTGPDKNKKISFFNMPEYEEWRDTIGKTCSYKQKYYKG---LGTSLPTEMREYF--- 665

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
             +            E   +  +   +   +                   +E      IN
Sbjct: 666 SQLDRHLKTFHTLQEEDVSLIDLAFSKKKADDRKEWLRGFQPGTFLDPNLTEIPISEFIN 725

Query: 659 NSDILVK 665
              IL  
Sbjct: 726 KELILFS 732


>gi|20387150|dbj|BAB91275.1| gyrase B [Streptomyces roseoverticillatus]
          Length = 399

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL       ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEPTDEHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVIHPTVIDFEAEDKERMLSLEVAMQWNSQYTEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|23451170|gb|AAN32690.1| DNA gyrase subunit B [Aeromonas schubertii]
          Length = 371

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 221/374 (59%), Positives = 280/374 (74%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  LKL I+R+G++YE ++  G    PL   G A   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL++ K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSILLTDER--DGREVHFCYEGGIKAFVEYLNQSK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q        +D I +++AM+WNDGY E V CFTNNIPQ+DGGTHL+G R+ LTR +
Sbjct: 118 TPIHQKVFHFSADQDGIGVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLAGFRAXLTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y++K   SKK K S  GDD REG  +V+SIK+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NKYMDKEDYSKKAKTSASGDDVREGLVAVISIKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L+ +L E+P +AKI+V K++DA+  R+AAR+AR +TRRKG LDIA LPGKL DC E+
Sbjct: 238 ADKLADFLLENPGDAKIVVNKIIDAARAREAARKARXMTRRKGALDIAGLPGKLXDCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR   M+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARXXXMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
            G GIG+D ++ +K
Sbjct: 358 XGCGIGRDEYNPDK 371


>gi|62085690|gb|AAX63237.1| DNA gyrase subunit B [Gordonia sputi]
          Length = 424

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 188/427 (44%), Positives = 256/427 (59%), Gaps = 34/427 (7%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I   G  +E ++       PL V G+A
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEINYGGYHWEQTYNYAKP-GPL-VQGAA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------- 216
              TGT V F    +IF    ++ +T+  RL+E++FLN  + I+L D+R           
Sbjct: 59  TRKTGTTVRFWADPEIFETTTYSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVE 118

Query: 217 ----------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
                                 +PR  T  Y  G+  ++ +L+R K P+ QS I      
Sbjct: 119 GDEDTAEKPKTAEEEAVAPTVTKPRTRTYHYPDGLIDYIKHLNRTKTPIHQSVIGFTAKG 178

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
               +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+  
Sbjct: 179 TGHEVEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKD 238

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
             + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P E
Sbjct: 239 GKLSGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLGHWFEANPAE 298

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKIIVKK +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDS
Sbjct: 299 AKIIVKKAVDSAQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDS 358

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
           AGGSAK GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ K
Sbjct: 359 AGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAK 417

Query: 495 LRYHKII 501
           LRYHKI+
Sbjct: 418 LRYHKIV 424


>gi|61676016|gb|AAX51673.1| gyrase subunit B [Simkania negevensis]
          Length = 284

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 129/284 (45%), Positives = 182/284 (64%), Gaps = 12/284 (4%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIGDT   SGLH ++YEV+DN+IDE++ G+   I V +N DGS T+ DNGRGIP   
Sbjct: 1   PGMYIGDTS-TSGLHQLVYEVVDNSIDEAMAGHCSEIYVIINADGSITLEDNGRGIPIQK 59

Query: 88  HKEEG------ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141
           H++E       +SA EV+MT LHAGGKF++++YKVSGGLHGV VS V ALSS + + + +
Sbjct: 60  HEKESQKQGREVSALEVVMTTLHAGGKFDKETYKVSGGLHGVSVSCVCALSSKMIVNVYK 119

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           +G ++EM F  G +   L   G+     GT +TF P   + +V +F+YD L  RLREL+F
Sbjct: 120 DGRVWEMHFSQGKVIKSLADMGATS-KKGTHITFWPDETVMTVTEFDYDILAKRLRELAF 178

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI----QGSRDNI 257
           LN  + I   D+R  +  ++   Y GG+++FVSYL+ +K  +   PI      +G    I
Sbjct: 179 LNRGISIFFQDERRDDNDDVNFRYDGGLKSFVSYLNENKNAVFPEPIYFYGTREGDDGPI 238

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            I++AM+WNDGY+E +  + NNI    GGTHL+G  +AL R +T
Sbjct: 239 DIEVAMQWNDGYNETIFSYVNNISTAHGGTHLTGFSTALPRVLT 282


>gi|163256334|dbj|BAF95677.1| DNA gyrase subunit B [Bradyrhizobium sp. MAFF 210181]
          Length = 269

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 153/265 (57%), Positives = 190/265 (71%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DNAIDE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGK
Sbjct: 1   VDNAIDEALAGHATRVEVILNSDNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGK 60

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A   
Sbjct: 61  FDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGR 120

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG
Sbjct: 121 RGTEVTFLASTETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAIEKREEMHYSGG 180

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTH
Sbjct: 181 VEEFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTH 240

Query: 289 LSGLRSALTRQITSYVEKSFGSKKD 313
           L+G R ALTRQ+  Y E +   +K 
Sbjct: 241 LAGFRGALTRQVNGYAEANAKKEKI 265


>gi|171683279|ref|XP_001906582.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941599|emb|CAP67253.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1767

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 148/710 (20%), Positives = 273/710 (38%), Gaps = 59/710 (8%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLD 50
           ++ Q L  L+ + KRP  YIG  +                         GL+ +  E+L 
Sbjct: 123 ETYQKLTQLEHIIKRPDTYIGSVERTDQKMWVFNKTEKLMENRVVSFVPGLYKIFDEILV 182

Query: 51  NAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           NA D S        + VT++ + G  +V +NG+GIP ++H++EG    E+I   L  G  
Sbjct: 183 NAADNSQRDASMTFLKVTIDSETGEISVENNGKGIPVEMHQKEGCYIPELIFGHLLTGSN 242

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAG 166
           ++    K  GG +G G  + N  S    L  +    G  Y+ ++ + +         +  
Sbjct: 243 YDDDEKKTVGGRNGYGAKLTNIFSLKFTLECQDSVNGKRYKQTWTDNMSKMEKPKITANK 302

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDT----LQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
            +    VTFLP    F +++   D     +  R+ +++   +SV++ L  ++    +   
Sbjct: 303 TNDFVRVTFLPDYKRFGMENGIDDDLEALMYRRVYDMAGTMASVKVWLNGEQLKIAKFKG 362

Query: 223 MFY---KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                 K         +   +KP   +    +      +  +    +DG  + V  F NN
Sbjct: 363 YCQLYAKSIAAERGDVVPEGEKPTAANVEYEEVRDKGRTWQVGFTVSDGSFQQV-SFVNN 421

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I    GGTH++ +   +T      + K    KK    +   + R      ++  + +P F
Sbjct: 422 IATTSGGTHVNYIADQITEA----LLKELNKKKKGHGLKPANFRNYIFIFINCLVDNPAF 477

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGL-SAWLEEHPLEAKIIVKKVLDASMVRDAARRA--- 395
           +SQTKE+L +      V +F +  + S    +   ++++I   +  A    D        
Sbjct: 478 TSQTKEQLTTK-----VSAFGSKCILSDAFLKKVQKSEVIANIMEFAERKADKMLAKSDG 532

Query: 396 -RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAIL 451
            +        L  A+L G       +   +  L L EGDSA   A  GR     +   + 
Sbjct: 533 NKRARVSNEKLVDANLAG------TKRGHECTLILTEGDSARALAVAGRAVLDPDRIGVF 586

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNV  A  ++++ ++EI  +   LG    Q   D   LRY  ++IM D D+DG+
Sbjct: 587 PLRGKMLNVRDASTEQIMKNKEIENIKKFLGLKHKQVYTDTRGLRYGHLMIMADQDLDGS 646

Query: 512 HIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           HI+ LL+ F   Q PSL+    F      P+  + +G + +     +S  + +  ++  E
Sbjct: 647 HIKGLLINFLEVQFPSLLRIPNFFQQFITPVVKVWQGTNPKKPLRPKSFFNLVEYETWKE 706

Query: 571 EIELFCDSKGVISKNDL-RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
             +             L  +  +DA      +       +    E++ +  +   +   +
Sbjct: 707 NNKNELRKWKYKYLKGLGSSSNEDAQVYFTDLDRHLKEFETLKPEESQMLDMIFSKKKAD 766

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                           +     S+   + N  IL            +++G
Sbjct: 767 ARKEWLGNFVPGTFLDSTAQRISYSQFLQNEFILFSMADNIRSIPSMIDG 816


>gi|45128541|gb|AAS55054.1| GyrB [Vibrio parahaemolyticus]
 gi|45128565|gb|AAS55056.1| GyrB [Vibrio parahaemolyticus]
          Length = 374

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 219/376 (58%), Positives = 293/376 (77%), Gaps = 3/376 (0%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT++ F PS++ FS
Sbjct: 1   GVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFS 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV +L+ +K P+
Sbjct: 60  NTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQHLNTNKTPI 118

Query: 244 MQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S
Sbjct: 119 IEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNS 178

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           +++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + +
Sbjct: 179 FMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGE 238

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP
Sbjct: 239 KLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDP 298

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG
Sbjct: 299 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 358

Query: 483 TGIGQDSFDINKLRYH 498
            GIG+D ++ +KLRYH
Sbjct: 359 CGIGRDEYNPDKLRYH 374


>gi|20387152|dbj|BAB91276.1| gyrase B [Streptomyces roseoverticillatus subsp. melrosporus]
 gi|308152551|dbj|BAJ22254.1| DNA gyrase subunit B [Streptomyces roseoverticillatus]
          Length = 399

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 183/401 (45%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL       ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEPTDEHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVIHPTVIDFEAEDKERMLSLEVAMQWNTQYTEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|38224449|gb|AAR14139.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp.
           funduliforme]
          Length = 401

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 174/402 (43%), Positives = 257/402 (63%), Gaps = 4/402 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGND 168
             +YKVSGGLHGVG+ VVNALS W ++++KREG++Y   ++ G     + +     AG  
Sbjct: 2   NDNYKVSGGLHGVGIFVVNALSEWTEVKVKREGSVYYQKYLRGKPIEDVKIISALEAGET 61

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  +IF    F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +  ++GG
Sbjct: 62  TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGG 121

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  F+  + +  + L+   I I+G  + + +D+A  +  G  E +  F NNI   +    
Sbjct: 122 ISDFLKEVTQENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEIIYSFVNNITPPEEALM 181

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L  L         + +EK    +  +  +          +++S+K+P P+F  QTK KL 
Sbjct: 182 LPDLELVYKGY--NDMEKVRDFEGKRWKITRRRHSGRNWAIISVKVPQPQFEGQTKTKLG 239

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEV  +V + ++  L  +LE++P + K+I++K+L++   R+AA+RAR+   RK VL++ 
Sbjct: 240 NSEVSGIVNTVLSTDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEVG 299

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADCS + P++ E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K 
Sbjct: 300 SLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKA 359

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           L S EI  ++TA GT IG++SFD+ KLRY KII+MTDADVDG
Sbjct: 360 LESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 401


>gi|149054149|gb|EDM05966.1| topoisomerase (DNA) 2 alpha [Rattus norvegicus]
          Length = 1528

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 140/744 (18%), Positives = 278/744 (37%), Gaps = 75/744 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 33  YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAA 92

Query: 54  DESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ + +  ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 93  DNKQRDPKMSCIRVTIDAENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD 152

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++++ +     +       + 
Sbjct: 153 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDMELKPFSGED 212

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++     V++ L   R            
Sbjct: 213 YTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNR---------LPV 263

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     + +++   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 264 KGFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVCLTMSEKGFQQI-SFVNSIATSKGG 322

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE 
Sbjct: 323 RHVDYVADQIVSKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKEN 379

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +            +++             + I+  V   + ++      +    +   + 
Sbjct: 380 MTLQAKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQIQL---NKKCSAVKHNRIK 435

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   R+  +  L L EGDSA      G    GR +    + PLRGKILNV 
Sbjct: 436 GIPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVR 493

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+
Sbjct: 494 EASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLI 553

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCD 577
            F     PSL+ + FL     P+  +++ K           E++        +    +  
Sbjct: 554 NFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSANPNHKKWKVKYYK 613

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  +  +     K   P       + A IS  F+ +   +    L   
Sbjct: 614 GLGTSTSKEAKEYFANMKRHRIQFKYSGPE------DDAAISLAFSKKQVDDRKEWLT-- 665

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
                NF+ ++ ++   G   +   L  +    +     +    I    S  +R   + +
Sbjct: 666 -----NFMEDRRQRKLLGLPEDY--LYGQTTMYLTYNDFINKELILFSNSDNERSIPSMV 718

Query: 698 EENYLTILSLI----CNGDKIKIT 717
           +        ++       DK ++ 
Sbjct: 719 DGLKPGQRKVLFTCFKRNDKREVK 742


>gi|20387126|dbj|BAB91263.1| gyrase B [Streptomyces roseoverticillatus]
 gi|20387220|dbj|BAB91310.1| gyrase B [Streptomyces roseoverticillatus]
          Length = 399

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL       ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEPTDEHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLSISLTDERPAHVDEEGKPLTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVVHPTVIDFEAEDKERMLSLEVAMQWNTQYTEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|19912053|dbj|BAB88338.1| DNA gyrase subunit B [Cytophaga sp. I-762]
          Length = 391

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 186/392 (47%), Positives = 257/392 (65%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALSS LK  + R+G I+E  +  G    P+   G +  +TGT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSSHLKATVYRDGKIWEQEYERGKTLYPVKSVGESS-ETGTIVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIE 230
           +P + IF+    ++Y+TL +R+RELS+LN  V I+L DKR      E    T     G++
Sbjct: 60  VPDNTIFTQTTEYSYETLANRMRELSYLNKGVTITLTDKRRKDEKGEFISETFHSDEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD  ++PL+QS I ++G ++ I +++AM +N GY EN+  + NNI   +GGTHLS
Sbjct: 120 EFIKFLDGTREPLIQSVISMEGEKNGIPVEVAMVYNTGYTENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTTTLKKYADNSGMLDKLKFEISGDDFREGLTAMVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEE+P +AK IV+KV  A+  R AA +AR++ +RK  + +  L
Sbjct: 240 EVTSAVSQAVSEMLTDYLEENPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMSVGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +        +KLRYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLDKLRYH 391


>gi|20387114|dbj|BAB91257.1| gyrase B [Streptomyces albireticuli]
          Length = 399

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 181/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G+ +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDTRVDHVDEEGKPLMVDYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+   ++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|146164151|gb|ABQ08738.1| DNA gyrase subunit beta [Aeromonas sharmana]
          Length = 368

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 218/371 (58%), Positives = 283/371 (76%), Gaps = 4/371 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R+G++YE ++  G  + PL   G + + TGTE+ F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRQGHVYEQTYFLGEPEAPLKQIGDS-DQTGTEIRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI AFV +L+++K
Sbjct: 60  IFSDTLFHYEILVKRLRELSFLNSGVAIHLEDER--DNREQHFHYEGGIRAFVEFLNQNK 117

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+          RD+ I++++AM+WND Y ENV CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 118 TPIHPKAFYFAQERDDGITVEVAMQWNDSYQENVYCFTNNIPQRDGGTHLAGFRAALTRT 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 LNNYMDKEGYSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQC 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 238 MGEKLDEYLLENPADAKTVVTKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 298 RDPALSELYIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLSSQEVATLIT 357

Query: 480 ALGTGIGQDSF 490
           ALG GIG+D +
Sbjct: 358 ALGCGIGRDEY 368


>gi|199974881|gb|ACH92120.1| DNA gyrase subunit B [Thiothrix lacustris]
          Length = 372

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 220/374 (58%), Positives = 292/374 (78%), Gaps = 2/374 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS+ L+L I+R G +++  +  G    PL + G     TGT V F PS+
Sbjct: 1   LHGVGISVVNALSANLELTIRRNGKLHQQMYKLGDPVAPLAIIGDTE-GTGTSVRFWPSA 59

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IF++ +F+YD L  RLRELSFLNS V+I L+D+R  E RE    Y+GGI+AFV++L+R+
Sbjct: 60  EIFALTEFHYDILAKRLRELSFLNSGVRIHLLDRR-GEGREDIFEYEGGIKAFVAHLNRN 118

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+  + I     RD++ +++A++WND Y EN+ C+TNNIPQ+DGG+HLSG R+ALTR 
Sbjct: 119 KSPIHNNIIYFTTERDDVGVEVALQWNDSYQENIFCYTNNIPQRDGGSHLSGFRAALTRT 178

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY+E +  +KK+K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +VE+ 
Sbjct: 179 LNSYIESAGLAKKEKISPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVEAA 238

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ L  +L E P EAK+I  K+++A+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 239 MNERLGEFLLESPGEAKLIAGKMIEAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 298

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVERARFDKM+SSQE+GTLI 
Sbjct: 299 KDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMISSQEVGTLII 358

Query: 480 ALGTGIGQDSFDIN 493
           ALG GIG++ ++I+
Sbjct: 359 ALGCGIGREEYNID 372


>gi|20387168|dbj|BAB91284.1| gyrase B [Streptomyces kishiwadensis]
          Length = 399

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 186/401 (46%), Positives = 257/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + IK +G+ +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEIKTDGHRWTQDYKLGVPTAPLQQ-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + +SL D+R     E          
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTLSLTDERPDHVDEEGKPLSVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R    +  + I         ++S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGDLVHPTVIAFDAEDKERSLSLEIAMQWNTQYTEGVYSFANIIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKAVYEELTDWLDRNPNEAADIIRKAIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKLADC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLADCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARVDKILQNQEIQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|20387206|dbj|BAB91303.1| gyrase B [Streptomyces paucisporogenes]
          Length = 399

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 183/401 (45%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + ++ +G  +   +  G    PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGFRWTQDYKLGAPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLSVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I          +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVVHPTVIDFDAEDKERMLSLEIAMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARVDKILQNQEIQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|20387154|dbj|BAB91277.1| gyrase B [Streptomyces netropsis]
 gi|20387190|dbj|BAB91295.1| gyrase B [Streptomyces netropsis]
 gi|308152553|dbj|BAJ22255.1| DNA gyrase subunit B [Streptomyces netropsis]
 gi|308152559|dbj|BAJ22258.1| DNA gyrase subunit B [Streptomyces netropsis]
          Length = 399

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 180/401 (44%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++I+L D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRIALTDTRADHVDEEGKPLMVDYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+   ++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNTEVQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|308152489|dbj|BAJ22223.1| DNA gyrase subunit B [Mycobacterium agri]
          Length = 421

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 186/422 (44%), Positives = 258/422 (61%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ I R+G  +  ++ + +     +  G A N TG
Sbjct: 3   NSGYAVSGGLHGVGVSVVNALSTRLEVDICRDGYEWFQTYDHAVPGT--IKQGEATNKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    ++F   +++++T+  RL+E +FLN  + I+L D+R                
Sbjct: 61  TTVRFWADPEVFETTNYDFETVARRLQEHAFLNKGLTITLSDERVSAEEADADVAGDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+ QS I   G  DN  ++
Sbjct: 121 APKSAEEKAAEAAGPAKTKNRTFHYPGGLVDFVRHINRTKTPIHQSIIDFSGKADNHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GD
Sbjct: 181 VAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|95108289|emb|CAK18166.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. pectinolytica]
          Length = 372

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 217/373 (58%), Positives = 282/373 (75%), Gaps = 2/373 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGV VVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  I
Sbjct: 2   GVGVLVVNALSDKLLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSNSGTGTEVRFWPSPTI 61

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K 
Sbjct: 62  FTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKT 119

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + 
Sbjct: 120 PIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 179

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 180 TYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMG 239

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+D
Sbjct: 240 EKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKD 299

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL
Sbjct: 300 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 359

Query: 482 GTGIGQDSFDINK 494
           G GIG+D ++ +K
Sbjct: 360 GCGIGRDEYNPDK 372


>gi|19912113|dbj|BAB88368.1| DNA gyrase subunit B [Cytophaga sp. MBIC01481]
          Length = 391

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 184/392 (46%), Positives = 257/392 (65%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  L  ++ ++G ++E  +  G    P+  TG   +D GT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSVHLHAKVYKKGQVWEQEYEKGKPLYPVKSTGET-DDNGTVVTF 59

Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
            P  +IF     F+YDTL  RLREL+FLN  ++ISLIDKR+     E        + G++
Sbjct: 60  KPDPEIFKEVTVFSYDTLAKRLRELAFLNKGIKISLIDKRNKDEKGEFISDNFHSEEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD  + P++   I ++G ++ I +++AM +ND Y+EN+  + NNI   +GGTHLS
Sbjct: 120 EFIRFLDETRVPIIGDVISMEGEKNEIPVEVAMIYNDSYNENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTTTLKKYADASGMLDKLKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L A+LEE+P +AK IV+KV+ A+  R AA++AR++ +RK V+    L
Sbjct: 240 EVTSAVSQAVSEMLEAYLEENPNDAKTIVQKVILAAQARHAAKKAREMVQRKTVMSGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP++ E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPEQCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +        +KLRYH
Sbjct: 360 NEEIRNIYTALGVTIGTEEDSKALNLSKLRYH 391


>gi|193788031|dbj|BAG50516.1| DNA gyrase subunit B [Listonella anguillarum]
 gi|193788033|dbj|BAG50517.1| DNA gyrase subunit B [Listonella anguillarum]
 gi|193788035|dbj|BAG50518.1| DNA gyrase subunit B [Listonella anguillarum]
 gi|193788037|dbj|BAG50519.1| DNA gyrase subunit B [Listonella anguillarum]
 gi|193788039|dbj|BAG50520.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 369

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 213/370 (57%), Positives = 285/370 (77%), Gaps = 3/370 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + TGT + F PS+
Sbjct: 1   LHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSA 59

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV +L+R+
Sbjct: 60  ETFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFRYEGGIKAFVGHLNRN 118

Query: 240 KKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G R ALTR
Sbjct: 119 KTPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES
Sbjct: 179 TLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKTAVES 238

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC 
Sbjct: 239 AMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQ 298

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLI
Sbjct: 299 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 358

Query: 479 TALGTGIGQD 488
           TALG GIG+D
Sbjct: 359 TALGCGIGRD 368


>gi|259018180|gb|ACV89682.1| DNA gyrase subunit B [Nocardia brasiliensis]
          Length = 416

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 182/419 (43%), Positives = 254/419 (60%), Gaps = 33/419 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I R+G  +  S+ + I    L V G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDRDGYHWSQSYKDSIP-GKL-VQGEASKQTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVSESEITDDVVSETAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+E FV +++R K+P+  S +   G      ++
Sbjct: 119 APKHAEADAAAAPVEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GD
Sbjct: 179 VAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV 
Sbjct: 239 DIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQKACNEHLTHWFEANPADAKTIVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
            GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 SGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 416


>gi|205371906|ref|ZP_03224726.1| DNA gyrase subunit B [Bacillus coahuilensis m4-4]
          Length = 480

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 204/430 (47%), Positives = 302/430 (70%), Gaps = 5/430 (1%)

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G   + TGT + F+P  +IF+    + +D L +RLREL+FLN  ++I++ DKR  + R 
Sbjct: 2   VGET-DKTGTIIHFIPDPEIFTETREYEFDILANRLRELAFLNRGIKITIEDKRVEDKRN 60

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y+GGI+++V +++R K+ +   PI I+G +D IS+++++++N+GY  N+  + NNI
Sbjct: 61  E-YLYEGGIKSYVEHINRTKEVIHDEPIYIEGEKDGISVEVSIQYNNGYTSNIFSYANNI 119

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH SG ++ALTR I  Y  ++   K+   ++ G+D REG T+++S+K PDP+F 
Sbjct: 120 NTYEGGTHESGFKTALTRVINDYARRNNIFKESDPNLSGEDVREGITAIVSVKHPDPQFE 179

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SE R++ ++  ++    ++ E+P  A+ IV+K + A+  R AA++AR+LTR
Sbjct: 180 GQTKTKLGNSEARTITDALFSEHFEKFMMENPTVARKIVEKGVMAARARMAAKKARELTR 239

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L+++SLPGKLADCS RDPK SE+++VEGDSAGGSAKQGR R  QAILPLRGKILNV
Sbjct: 240 RKSALEVSSLPGKLADCSSRDPKISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 299

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR DK+LS+ E+ ++ITALGTGIG+D FDI K RYHKI+IMTDADVDG+HIRTLLLTF
Sbjct: 300 EKARLDKILSNNEVRSIITALGTGIGED-FDIAKARYHKIVIMTDADVDGSHIRTLLLTF 358

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSK 579
           F+R M  ++  G++YI +PPLY + +GK ++Y  +E+ LE  L   S + +         
Sbjct: 359 FYRYMRQILEAGYVYIAQPPLYKVQQGKKVEYAYNEKQLEAVLSTLSPTPKPGIQRYKGL 418

Query: 580 GVISKNDLRN 589
           G ++ + L  
Sbjct: 419 GEMNPDQLWE 428



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 91/184 (49%), Gaps = 23/184 (12%)

Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGS 687
             RL+ I   +E          G   + DI   R  + V      ++GS I +    F  
Sbjct: 301 KARLDKILSNNEVRSIITALGTGIGEDFDIAKARYHKIVIMTDADVDGSHIRTLLLTFFY 360

Query: 688 KYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYK 740
           +Y R I            L  +  G K++       L+ + S     +S      +QRYK
Sbjct: 361 RYMRQILEAGYVYIAQPPLYKVQQGKKVEYAYNEKQLEAVLST----LSPTPKPGIQRYK 416

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMN  QLWETT++P TR+LL+V + DA +AD+ F  LMGD+VEPRR FI+EN++   
Sbjct: 417 GLGEMNPDQLWETTMDPQTRTLLQVSLEDAIEADETFEILMGDKVEPRRNFIEENAVYVK 476

Query: 800 ALDI 803
            LDI
Sbjct: 477 NLDI 480


>gi|209863345|gb|ACI88772.1| DNA gyrase subunit B [Aeromonas sp. JH97]
 gi|209863355|gb|ACI88777.1| DNA gyrase subunit B [Aeromonas sp. JH74]
          Length = 366

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 216/368 (58%), Positives = 279/368 (75%), Gaps = 2/368 (0%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIF 60

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P
Sbjct: 61  TDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTP 118

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +
Sbjct: 119 IHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNT 178

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + +
Sbjct: 179 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 238

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP
Sbjct: 239 KLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 298

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 299 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 358

Query: 483 TGIGQDSF 490
            GIG+D +
Sbjct: 359 CGIGRDEY 366


>gi|20387148|dbj|BAB91274.1| gyrase B [Streptomyces eurocidicus]
 gi|308152577|dbj|BAJ22267.1| DNA gyrase subunit B [Streptomyces eurocidicus]
          Length = 399

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 180/401 (44%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + ++ +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGYRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDTRVDHVDEEGKPLMVDYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+   ++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|66474601|gb|AAY46870.1| GyrB [Aeromonas sp. SF8-170]
          Length = 371

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 217/374 (58%), Positives = 281/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + N TGTEV F PS+ 
Sbjct: 1   HGVGVSVVNALSEKLLLTIRRNGHVYEQTYHMGEPQAPLKQIGDS-NGTGTEVRFWPSAT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I + +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFSTEQDGIGVKVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NTYMDKEDHSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRR G LDI  L GKLADC E+
Sbjct: 238 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRNGALDITGLLGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVERARFD+M+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVERARFDRMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|193788029|dbj|BAG50515.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 369

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 214/370 (57%), Positives = 285/370 (77%), Gaps = 3/370 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + TGT + F PS+
Sbjct: 1   LHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSA 59

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV +L+R+
Sbjct: 60  ETFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFRYEGGIKAFVGHLNRN 118

Query: 240 KKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G R ALTR
Sbjct: 119 KTPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES
Sbjct: 179 TLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVES 238

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC 
Sbjct: 239 AMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQ 298

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLI
Sbjct: 299 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 358

Query: 479 TALGTGIGQD 488
           TALG GIG+D
Sbjct: 359 TALGCGIGRD 368


>gi|20387210|dbj|BAB91305.1| gyrase B [Streptomyces roseoverticillatus]
 gi|20387236|dbj|BAB91318.1| gyrase B [Streptomyces roseoverticillatus]
 gi|308152563|dbj|BAJ22260.1| DNA gyrase subunit B [Streptomyces roseoverticillatus]
          Length = 399

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 183/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQQ-NEATDEHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVIHPTVIDFEAEDKERMLSLEVAMQWNTQYTEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|27530827|dbj|BAC54061.1| DNA gyrase subunit B [Nocardia otitidiscaviarum]
          Length = 417

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 178/420 (42%), Positives = 256/420 (60%), Gaps = 31/420 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ + + I R+G  +   + +      L + G     TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMHVEIDRDGYHWSQEYKDSKP-GKL-IKGDPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T  TF    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTQTFWADPNIFETTVYNFETVARRLQEMAFLNKGLTITLTDERVSEGEITDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                        P+ +  T  Y GG+E +V +++R K P+  S +   G      +++A
Sbjct: 119 APKHLDENTPPAEPKVKTRTYHYPGGLEDYVKHINRTKTPIHNSIVSFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVADPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R    QAILPLRGKI+NVE++R DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 RDSMYQAILPLRGKIINVEKSRIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 417


>gi|308153154|dbj|BAJ22166.1| DNA gyrase subunit B [Mycobacterium abscessus]
          Length = 419

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 176/422 (41%), Positives = 249/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L++ I R+G  ++  +        L   G+A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKLEVEILRDGFEWQQVYTRSEP-GTLQK-GAATKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    +IF    ++++T+  RL+E +FLN  + I L D+R                
Sbjct: 59  TTVRFWADPEIFETTTYDFETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +     Y  G+  FV +++R K  +  + +   G  +   ++
Sbjct: 119 APKNAEEQAAESSAPHKVKNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GD
Sbjct: 179 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W + +P +AK +V 
Sbjct: 239 DIREGLAAVISVKVGEPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 359 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|20387162|dbj|BAB91281.1| gyrase B [Streptomyces hiroshimensis]
          Length = 399

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 183/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQQ-NEATDEHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVIHPTVIDFEAEDKERMLSLEVAMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|209863359|gb|ACI88779.1| DNA gyrase subunit B [Aeromonas sp. JH93]
          Length = 366

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 214/368 (58%), Positives = 275/368 (74%), Gaps = 2/368 (0%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIF 60

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   ++Y+ L  RLRELSFLNS V I L D+R          Y+GGI+AFV YL+++K P
Sbjct: 61  TDTLYHYEILAKRLRELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNKTP 118

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +
Sbjct: 119 IHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNT 178

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + +
Sbjct: 179 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 238

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP
Sbjct: 239 KLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 298

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 299 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 358

Query: 483 TGIGQDSF 490
            GIG+D +
Sbjct: 359 CGIGRDEY 366


>gi|6729253|dbj|BAA89748.1| DNA gyrase subunit B [Mycobacterium gastri]
 gi|6729301|dbj|BAA89772.1| DNA gyrase subunit B [Mycobacterium gastri]
 gi|6729303|dbj|BAA89773.1| DNA gyrase subunit B [Mycobacterium gastri]
          Length = 419

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 177/422 (41%), Positives = 253/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y +SGGLHGVGVSVVNALS  L++ IKR+G+ +   +        L   G+    TG
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSIRLEVEIKRDGHEWSQVYEKSEPMG-LKQ-GAPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    ++F   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPNVFETTEYDFETVARRLQEMAFLNKGLTINLTDQRVTQDEVVDEVVSDVAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + ++ T  Y GG+  FV +++R K  +  S +   G      ++
Sbjct: 119 APKSASEKAAEFTAPHKVKKRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 179 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK +V 
Sbjct: 239 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKTVVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI +LRYHKI
Sbjct: 359 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIARLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|23451164|gb|AAN32687.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 371

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 282/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++Y  ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYXHTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARF KM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFXKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|20387212|dbj|BAB91306.1| gyrase B [Streptomyces salmonis]
 gi|308152565|dbj|BAJ22261.1| DNA gyrase subunit B [Streptomyces salmonis]
          Length = 399

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 184/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQQ-NEATDEHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVIHPTVIDFEAEDKERMLSLEVAMQWNSQYTEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|20387166|dbj|BAB91283.1| gyrase B [Streptomyces netropsis]
 gi|308152555|dbj|BAJ22256.1| DNA gyrase subunit B [Streptomyces netropsis]
          Length = 399

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 180/401 (44%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++I+L D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRIALTDTRADHVDEEGKPLTVDYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+   ++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNTEVQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|68445340|dbj|BAE03171.1| DNA gyrase subunit B [actinobacterium Aac-25]
          Length = 399

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 175/401 (43%), Positives = 253/401 (63%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS  L + ++ EG+++  +++ G    PL   G A  +TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSMRLTVAVRTEGHLWTQTYLRGEPTAPLAK-GEAVTETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T V F    ++F    +N++TL  R +E++FLN  + I LID+R     E          
Sbjct: 60  TTVAFWADDEVFETTAYNFETLSRRFQEMAFLNRGLTIELIDERPEYKDEDGNLRSVRYK 119

Query: 225 YKGGIEAFVSYLDRHK-KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV Y++  K + +    I          I+ +++++WN+ Y E+V  F N I 
Sbjct: 120 YDGGISDFVRYINAAKGELVHPQVIEFGAEDVERRIAAEVSLQWNNQYSESVYTFANGIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSALT  +  Y +     K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + ++ W + +P E K IV+K + A+  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEARTFVQKITYEAIADWFDRNPNEGKDIVRKSIQAATARIAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKLADC   +P + E+F+VEGDSAGGSAKQGR    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLADCQSTNPAECEIFVVEGDSAGGSAKQGRDPRTQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+ALGTGI  D FD+++LRYHKI++
Sbjct: 360 KARIDKVLQNTEVQGLISALGTGI-HDDFDVSRLRYHKIVL 399


>gi|68445360|dbj|BAE03181.1| DNA gyrase subunit B [actinobacterium Aac-85]
          Length = 399

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 176/401 (43%), Positives = 254/401 (63%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS  L + ++ EG+++  +++ G    PL V G A  +TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSMRLTVAVRTEGHLWTQTYLRGEPTAPL-VKGEAVAETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T V F    ++F    +N++TL  R +E++FLN  + I LID+R     E          
Sbjct: 60  TTVAFWADDEVFETTAYNFETLSRRFQEMAFLNRGLTIELIDERPEYKDEEGNLRSVRYK 119

Query: 225 YKGGIEAFVSYLDRHK-KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV Y++  K + +    I          I+ +++++WN+ Y E+V  F N I 
Sbjct: 120 YDGGISDFVRYINAAKGEMVHPQVIEFGAEDVERRIAAEVSLQWNNQYSESVYTFANGIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSALT  +  Y +     K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + ++ W + +P E K IV+K + A+  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEARTFVQKITYEAIADWFDRNPNEGKDIVRKSIQAATARIAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKLADC   +P + E+F+VEGDSAGGSAKQGR    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLADCQSTNPAECEIFVVEGDSAGGSAKQGRDPRTQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+ALGTGI  D FD+++LRYHKI++
Sbjct: 360 KARIDKVLQNTEVQGLISALGTGI-HDDFDVSRLRYHKIVL 399


>gi|198042724|gb|ACH81187.1| GyrB [Vibrio sp. UST981101-012]
          Length = 373

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 221/374 (59%), Positives = 294/374 (78%), Gaps = 3/374 (0%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G+I+  ++ +G    PL V G   + TGT++ F PS++ FS  +F+YD L  RLRELSFL
Sbjct: 2   GHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFL 60

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDL 261
           NS V I L+D+R  +       Y+GGI+AFV +L+ +K P+++        R++ IS+++
Sbjct: 61  NSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNKTPIIEKIFHFNSEREDGISVEV 119

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD
Sbjct: 120 AMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDD 179

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K
Sbjct: 180 AREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSK 239

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           ++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQ
Sbjct: 240 IIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQ 299

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH II
Sbjct: 300 GRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNII 359

Query: 502 IMTDADVDGAHIRT 515
           IMTDADVDG+HIRT
Sbjct: 360 IMTDADVDGSHIRT 373


>gi|20387200|dbj|BAB91300.1| gyrase B [Streptomyces orinoci]
          Length = 399

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 184/401 (45%), Positives = 255/401 (63%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALSS + + ++ +G  +   +  G    PL        +TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSSRVAVEVRTDGFRWTQDYKLGAPTAPLQQ-NEPTEETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R     E          
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTISLTDERPDHVDEEGKPLSVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGELVHPTVIDFEAEDTERKLSLEVAMQWNTQYSEGVYSFANIIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTSLVNKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKAVYEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARVDKILQNQEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|163256321|dbj|BAF95671.1| DNA gyrase subunit B [Bradyrhizobium sp. KO13]
          Length = 271

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 159/273 (58%), Positives = 198/273 (72%), Gaps = 2/273 (0%)

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           +DE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q 
Sbjct: 1   VDEALAGHATRVEVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQN 60

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTE
Sbjct: 61  SYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGKRGTE 120

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTFL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   MFY GG+E F
Sbjct: 121 VTFLASTETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMFYSGGVEEF 180

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR+KK L+ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G 
Sbjct: 181 VKYLDRNKKALVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGF 240

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           R ALTRQ+  Y E +  +KK+K ++ G DCREG
Sbjct: 241 RGALTRQVNGYAEAN--AKKEKIALTGGDCREG 271


>gi|38453799|dbj|BAD02200.1| DNA topoisomerase II [Arthroderma obtusum]
          Length = 1086

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 140/682 (20%), Positives = 248/682 (36%), Gaps = 49/682 (7%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNAID 54
            +  L+ + KRP  YIG  +                         GL+ +  E+L NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 55  ESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
                     I VTL+ + G  +V +NG GIP ++HK+E I   E+I   L     +N  
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGHGIPVEIHKKEQIYIPELIFGHLLTSSNYNDM 120

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +          ++++++N +          +  D  
Sbjct: 121 QEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKKFKLTWMNNMSTMGKAKITESKGDDY 180

Query: 171 TEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T+VTF P    F +   + D    ++ R+ +++       + L   R P           
Sbjct: 181 TKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCG-TTVKLNGTRIPVKSFKKYMEMY 239

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                 +      +        I     +   ++    +DG  + V  F N+I    GGT
Sbjct: 240 TK----AIKTERGEDPTSDKNDIITESPDRRWEIGFTVSDGSFQQV-SFVNSIATTSGGT 294

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++ +   +        +      K   ++     +      ++ ++ +P F+SQTKE+L
Sbjct: 295 HVNYISDQI---CNKLADALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +   +   +  V+D     + +  +   I+      A  +       R        L  
Sbjct: 352 TTRPSQFGSKCIVSDEFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTD 411

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERAR 464
           A+  G       ++     L L EGDSA G A  GR+    +   + PLRGK+LNV  A 
Sbjct: 412 ANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDAS 465

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D++  + EI  +   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ +    
Sbjct: 466 VDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVA 525

Query: 525 MPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            P+L+   GFL     P+  + +G        +         +            K    
Sbjct: 526 FPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKKYYK 585

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                +  D  +    L +     H     E  +I   F+ +   E       +      
Sbjct: 586 GLGTSSTEDAQIYFQDLDRHLKQFHTLQDKEAELIELAFSKKKADER-KEWLRQFKPGTY 644

Query: 644 FIAEKSEKSWHGSINNSDILVK 665
                 + ++   IN   IL  
Sbjct: 645 LDHSTDQITYTDFINKELILFS 666


>gi|195031277|ref|XP_001988321.1| GH10628 [Drosophila grimshawi]
 gi|193904321|gb|EDW03188.1| GH10628 [Drosophila grimshawi]
          Length = 1486

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 135/744 (18%), Positives = 266/744 (35%), Gaps = 75/744 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 31  YQKKSQLEHILLRPDSYIGSVEFTKELMWVLDLEKNRMVQREISFVPGLYKIFDEILVNA 90

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I V ++ +    ++ +NG+GIP  +HKEE +    +I   L     +N
Sbjct: 91  ADNKQRDKSMNTIKVDIDPEKNIVSIWNNGQGIPVTMHKEENMYVPTMIFGHLLTSSNYN 150

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRI----KREGNIYEMSFINGILDNPLVVTGSAG 166
               KV+GG +G G  + N  S    +       R    ++ ++ N +      +   + 
Sbjct: 151 DDEKKVTGGRNGYGAKLCNIFSDSFTVETSTKQFR--KSFKQTWGNNMGKAGDPIIKDSS 208

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
               T +TF P    F +   + D    +  R  +++     V + L   + P       
Sbjct: 209 GTDFTRITFSPDLTKFKMDSLDKDIVALMSRRAYDVAASTKGVSVFLNGTKVP------- 261

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
               G + ++    ++       PI++         ++A+  ++   + V  F N+I   
Sbjct: 262 --VKGFKDYIDLFVKNDDEDSGQPIKVVYEACGDRWEVAVCPSERGFQQV-SFVNSIATT 318

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG H+  +   + +Q+   ++K   +     S+     R      ++  + +P F SQT
Sbjct: 319 KGGRHVDHVVDNVIKQLIEVLKKKNKNG---ISIKPFQVRNHLWIFVNCLIENPTFDSQT 375

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE +         +  ++D     + +       IV+ VL  +  +     A+   ++  
Sbjct: 376 KENMTLQAKSFGSKCVLSDKFIGSVSKAG-----IVESVLAWAKFKAQNDIAKTGGKKSS 430

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNV 460
            +          +   ++  +  L L EGDSA   A  G     R    + PLRGK+LNV
Sbjct: 431 KIKGIPKLEDANEAGTKNSIQCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNV 490

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLL 517
             A F ++  + EI  L   +G    +    I+    LRY K++IMTD D DG+HI+ LL
Sbjct: 491 REATFKQLTENAEINNLCKIIGLQYKKKYLSIDDLKTLRYGKVMIMTDQDQDGSHIKGLL 550

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           + F     P L+   FL     P+   T+             E++ ++ +      +   
Sbjct: 551 INFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSMPEFEEWKMDTANHHTYNIKYY 610

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                S          + +  +  +D   +      +  V          ++   S  + 
Sbjct: 611 KGLGTS---------TSKEAKEYFQDMERHRILFKYDGQVDDDNIVMAFAKKHVDSRKTW 661

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L N ++ +  + +            L  +  + V     +    +    +  +R   + +
Sbjct: 662 LTNHMDEVKRRKQLGL-----PERYLYTKGTKQVSYSDFINLELVLFSNADNERSIPSLV 716

Query: 698 EENYLTILSLI----CNGDKIKIT 717
           +        ++       DK ++ 
Sbjct: 717 DGLKPGQRKVMFTCFKRNDKREVK 740


>gi|6729239|dbj|BAA89741.1| DNA gyrase subunit B [Mycobacterium malmoense]
          Length = 421

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 180/422 (42%), Positives = 253/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ + R+G ++   + +      L   G A   TG
Sbjct: 3   NSGYNVSGGLHGVGVSVVNALSTRLEVDVARDGYMWSQFYDHAEP-GTLKQ-GEATKTTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    DIF   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVSEEEVVDDVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+  S +   G      ++
Sbjct: 121 APKSAVEKAAESTGPHKVKHRTFHYPGGLVDFVKHINRTKNPIHNSIVDFSGKGPGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK +V 
Sbjct: 241 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens]
          Length = 1531

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 144/765 (18%), Positives = 282/765 (36%), Gaps = 82/765 (10%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    RE   +++ 
Sbjct: 133 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ 192

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 193 TWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 252

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 253 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTM 303

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 304 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNH 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTKE +            +++             + I+  V   
Sbjct: 360 MWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFK 418

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAK 440
           +         +    +   +          D   R+  +  L L EGDSA      G   
Sbjct: 419 AQ---VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGV 475

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRY 497
            GR +    + PLRGKILNV  A   +++ + EI  +I  +G    ++  D +    LRY
Sbjct: 476 VGRDK--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRY 533

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++ K         
Sbjct: 534 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLP 593

Query: 558 SLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
             E++  +     +    +    G  +  + + +  D  +     K   P       + A
Sbjct: 594 EFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDA 647

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
            IS  F+ +   +    L        NF+ ++ ++   G   +   L  +    +     
Sbjct: 648 AISLAFSKKQIDDRKEWLT-------NFMEDRRQRKLLGLPEDY--LYGQTTTYLTYNDF 698

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKIT 717
           +    I    S  +R   + ++        ++       DK ++ 
Sbjct: 699 INKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 743


>gi|294847490|gb|ADF43755.1| DNA gyrase subunit B [Nocardia asiatica]
          Length = 414

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 179/417 (42%), Positives = 252/417 (60%), Gaps = 30/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I R+G  +  ++ +      L   G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDRDGYHWSQTYKDSTP-GKLAQ-GEPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAE 118

Query: 215 -----------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +  T  Y GG+E FV +++R K+P+  S +   G      +++AM
Sbjct: 119 APKHADESAPAEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K +
Sbjct: 239 EGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
               QAILP+RGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI
Sbjct: 359 DSMYQAILPIRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKI 414


>gi|308152437|dbj|BAJ22197.1| DNA gyrase subunit B [Rhodococcus globerulus]
 gi|308152451|dbj|BAJ22204.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 419

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 179/422 (42%), Positives = 256/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IK +G  +  ++ +      L + G A  +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKVDGYEWHQTYTDSKP-GEL-IQGPATKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
           T V+F    +IF    +N++T+  RL+E++FLN  + I+L D+R+               
Sbjct: 59  TTVSFWADPEIFETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDVDEESIDVAEA 118

Query: 217 ----------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +     Y GG+E +V ++++ K P+  S +          ++
Sbjct: 119 PKSAAETQEAAAAAPRKAKTRVYHYPGGLEDYVRHINKSKSPIHNSVVGFTAKGTGHELE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+ ++++ GD
Sbjct: 179 VAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEQNLNGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L  WLE +P +AK IV 
Sbjct: 239 DIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLQHWLEANPADAKTIVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSE+++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKILNVE+AR D+ L + EI ++ITA GTGI  D FDI KLRYHKI
Sbjct: 359 SGRDSMYQAILPLRGKILNVEKARLDRALKNTEIQSMITAFGTGI-HDEFDIAKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|20387142|dbj|BAB91271.1| gyrase B [Streptomyces cinnamoneus]
          Length = 399

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 260/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLSVGYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV+Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVTYLNSRKGELIHPTVIDIEAEDKERLLSVEVAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|209863341|gb|ACI88770.1| DNA gyrase subunit B [Aeromonas sp. JH78]
          Length = 366

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 217/368 (58%), Positives = 280/368 (76%), Gaps = 2/368 (0%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQMGDSSSGTGTEVRFWPSPTIF 60

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P
Sbjct: 61  TDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTP 118

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + S
Sbjct: 119 IHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNS 178

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + +
Sbjct: 179 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 238

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP
Sbjct: 239 KLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 298

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 299 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 358

Query: 483 TGIGQDSF 490
            GIG+D +
Sbjct: 359 CGIGRDEY 366


>gi|193788027|dbj|BAG50514.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 369

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 213/370 (57%), Positives = 286/370 (77%), Gaps = 3/370 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + TGT + F PS+
Sbjct: 1   LHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSA 59

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F+  +F+YD L  RLRELSFLNS V I L+D+R  E ++    Y+GGI+AFV +L+R+
Sbjct: 60  ETFTNIEFHYDILAKRLRELSFLNSGVSIKLLDER-EEDKKDHFRYEGGIKAFVGHLNRN 118

Query: 240 KKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G R ALTR
Sbjct: 119 KTPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES
Sbjct: 179 TLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKTAVES 238

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            + + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC 
Sbjct: 239 AMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQ 298

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLI
Sbjct: 299 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 358

Query: 479 TALGTGIGQD 488
           TALG GIG+D
Sbjct: 359 TALGCGIGRD 368


>gi|324500526|gb|ADY40245.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1388

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 146/747 (19%), Positives = 271/747 (36%), Gaps = 78/747 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDT-----------------------DGESGLHHMIYEVLDN 51
            Q    L+ +  RP  YIG                             GL+ +  EVL N
Sbjct: 85  YQKKSQLEHILLRPDTYIGSVEHTDRAPMWVYDAEAERIVQRDISYVPGLYKIFDEVLVN 144

Query: 52  AIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D          I VT+N +     V +NG+GIP   HK E +   E+I   L     +
Sbjct: 145 AADNKQRDPKMSTIKVTINKEKNEIAVFNNGKGIPVVRHKVENVYVPELIFGTLLTSSNY 204

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           +    KV+GG +G G  + N  S    +    K  G +++ ++IN +  +     G +  
Sbjct: 205 DDSERKVTGGRNGYGAKLCNIFSKEFTVETSSKEYGKVFKQTWINNMTKDKEPFIGKSSG 264

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +  T VTF P    F + + + D    +  R  +++     V++ L +K         + 
Sbjct: 265 EDFTRVTFKPDLSKFKMTELDDDIVALMSRRAYDVAGSTKGVKVYLNNK---------LL 315

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G + +V    +H       P ++     N   D+A+  ++   + V  F N+I    
Sbjct: 316 PVQGFKQYVDQYAKHNLDSQGEPYKVIYETANERWDVAITVSEKGFQQV-SFVNSIATTK 374

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   +T ++   ++K     K   SV     +      ++  + +P F SQTK
Sbjct: 375 GGRHVDYVADQITSKLIDTIKKK--IGKSGISVKPFQIKNHMWVFVNCLIENPTFDSQTK 432

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKG 403
           E L         +  +++     + +       IV+ V+     +      +   ++R  
Sbjct: 433 EALTLQSKSFGSKCELSERFVNSVMKCG-----IVEAVMAWVRFKQQETLDKKCSSKRTS 487

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKIL 458
            L          D   ++     L L EGDSA      G    GR R    + PLRGK+L
Sbjct: 488 KLKGVPKLEDANDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRDR--YGVFPLRGKML 545

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL---RYHKIIIMTDADVDGAHIRT 515
           NV      +++ + EI  LI  +G          + +   RY K+++M D D DG+HI+ 
Sbjct: 546 NVREGNHKQIMENAEINALIKIIGLQYRLKYDKDDDMKTLRYGKVMVMADQDQDGSHIKG 605

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIEL 574
           L++ F     P+LI   F+     P+   T+GK            ++  N ++       
Sbjct: 606 LVINFIHYNWPALIRRNFVEEFITPIVKATKGKEEYSFFSLPEYNEWRNNTENWKSYRIK 665

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  +  + + +  D  +     +      D +                      +
Sbjct: 666 YYKGLGTSTSKEAKEYFTDMARHRIRFRYAGDEDDSSI-------------DMAFSKRKI 712

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
             +     N++AEK ++   G       L  +  R +  +  +    +    +  +R   
Sbjct: 713 EDRKVWLTNWMAEKRDRREQGLTEEY--LYDKDTRSISFKDFVNKELVLFSNADNERSIP 770

Query: 695 NRIEENYLTILSLI----CNGDKIKIT 717
           + ++        ++       DK ++ 
Sbjct: 771 SLVDGLKPGQRKVLFTCFKRADKKEVK 797


>gi|20387132|dbj|BAB91266.1| gyrase B [Streptomyces caespitosus]
          Length = 399

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 260/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLSVDYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV+Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVTYLNARKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G RSALT  I  Y  +    ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRSALTGLINRYAREKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+   ++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens]
 gi|13959709|sp|P11388|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens]
 gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens]
 gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens]
 gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct]
          Length = 1531

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 144/765 (18%), Positives = 282/765 (36%), Gaps = 82/765 (10%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    RE   +++ 
Sbjct: 133 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ 192

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 193 TWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 252

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 253 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTM 303

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 304 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNH 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTKE +            +++             + I+  V   
Sbjct: 360 MWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFK 418

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAK 440
           +         +    +   +          D   R+  +  L L EGDSA      G   
Sbjct: 419 AQ---VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGV 475

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRY 497
            GR +    + PLRGKILNV  A   +++ + EI  +I  +G    ++  D +    LRY
Sbjct: 476 VGRDK--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRY 533

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++ K         
Sbjct: 534 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLP 593

Query: 558 SLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
             E++  +     +    +    G  +  + + +  D  +     K   P       + A
Sbjct: 594 EFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDA 647

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
            IS  F+ +   +    L        NF+ ++ ++   G   +   L  +    +     
Sbjct: 648 AISLAFSKKQIDDRKEWLT-------NFMEDRRQRKLLGLPEDY--LYGQTTTYLTYNDF 698

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKIT 717
           +    I    S  +R   + ++        ++       DK ++ 
Sbjct: 699 INKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 743


>gi|4996794|dbj|BAA78442.1| subunit B protein of DNA gyrase [bacterium rM3]
          Length = 317

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 159/321 (49%), Positives = 206/321 (64%), Gaps = 32/321 (9%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGIS 94
           GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E   S
Sbjct: 1   GLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPKRS 59

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  YE+ F  G 
Sbjct: 60  AAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFSRGH 119

Query: 155 L------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           +             +P+ V G + +  GT+V FLP  +IF     F Y+ L  RLRELSF
Sbjct: 120 VQNRLIEVVDGAEVSPMRVVGES-DKRGTKVHFLPDQEIFKENFDFRYEILAKRLRELSF 178

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD------ 255
           LN+ V+I L D+R  +         GG++ FV +++  KK L  +     GSR       
Sbjct: 179 LNNGVRIRLKDERDGKE--DDFSGAGGVKGFVEFINGTKKVLHPTAFHAMGSRPAETYGG 236

Query: 256 ----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +K
Sbjct: 237 IPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNDLAK 296

Query: 312 KDKRSVIGDDCREGFTSVLSI 332
           K K  V GDD REG  +VLS+
Sbjct: 297 KAKVEVTGDDMREGLCAVLSV 317


>gi|20387232|dbj|BAB91316.1| gyrase B [Streptomyces viridiflavus]
          Length = 399

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 180/401 (44%), Positives = 260/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLSVEYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV+Y   R  + +  + I ++       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVTYLNSRKGELIHPTVIDVEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIIL 399


>gi|308152531|dbj|BAJ22244.1| DNA gyrase subunit B [Arthrobacter oxydans]
          Length = 417

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 182/419 (43%), Positives = 265/419 (63%), Gaps = 29/419 (6%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDT 169
              Y VSGGLHGVG+SVVNALSS +   ++R+G+++ MSF +G      L V G   + T
Sbjct: 1   GGGYAVSGGLHGVGISVVNALSSRVDTEVRRQGHVWRMSFADGGKPQGSL-VKGEETDRT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------- 215
           GT  TF P   IF V +F+++TL+ R ++++FLN  ++I+L D+R+              
Sbjct: 60  GTTQTFYPDPAIFEVTEFDFETLRARFQQMAFLNKGLRITLTDERTSAEADGDADLDLDA 119

Query: 216 --------PEPREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGSR--DNISIDLAM 263
                    E R +   Y  G+  +V +L+  KK     +  I  +       I++++AM
Sbjct: 120 VVTEGEVSAEHRTVVYQYDDGLLDYVKHLNSGKKVDVVHEDVIAFETEDKDRKIALEMAM 179

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +W + Y E+V  + N I   +GGTH  G R+A+T  I  Y  +    K+   ++ GDD R
Sbjct: 180 QWTNAYSESVHTYANTINTHEGGTHEEGFRAAMTSLINRYAREKGIIKEKDDNLTGDDIR 239

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T+V+S+K+ +P+F  QTK KL +SEV+  V+  V DGL  WLE +P  A+ +++K +
Sbjct: 240 EGLTAVISVKLAEPQFEGQTKTKLGNSEVKGFVQRVVTDGLGDWLERNPGPARDVIRKAI 299

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            A+  R AAR+ARD  RRK  L+   +PGKL+DCS ++P+K E+++VEGDSAGGSAK+GR
Sbjct: 300 SAAQARMAARKARDNARRKSPLESFGMPGKLSDCSSKNPEKCEVYIVEGDSAGGSAKRGR 359

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           + E QAILPLRGKILNVERAR DK L + E+ ++ITA GTGIG+D FD++KLRYHKI++
Sbjct: 360 NPETQAILPLRGKILNVERARLDKALGNAEVQSMITAFGTGIGED-FDLSKLRYHKIVL 417


>gi|20387118|dbj|BAB91259.1| gyrase B [Streptomyces ardus]
          Length = 399

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 181/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLSVDYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNARKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y  +    ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARERKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+   ++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|66474557|gb|AAY46848.1| GyrB [Aeromonas hydrophila]
          Length = 371

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 221/374 (59%), Positives = 282/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGV VSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVCVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D +  +K
Sbjct: 358 LGCGIGRDEYKPDK 371


>gi|324500558|gb|ADY40259.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1586

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 146/747 (19%), Positives = 271/747 (36%), Gaps = 78/747 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDT-----------------------DGESGLHHMIYEVLDN 51
            Q    L+ +  RP  YIG                             GL+ +  EVL N
Sbjct: 85  YQKKSQLEHILLRPDTYIGSVEHTDRAPMWVYDAEAERIVQRDISYVPGLYKIFDEVLVN 144

Query: 52  AIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D          I VT+N +     V +NG+GIP   HK E +   E+I   L     +
Sbjct: 145 AADNKQRDPKMSTIKVTINKEKNEIAVFNNGKGIPVVRHKVENVYVPELIFGTLLTSSNY 204

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           +    KV+GG +G G  + N  S    +    K  G +++ ++IN +  +     G +  
Sbjct: 205 DDSERKVTGGRNGYGAKLCNIFSKEFTVETSSKEYGKVFKQTWINNMTKDKEPFIGKSSG 264

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +  T VTF P    F + + + D    +  R  +++     V++ L +K         + 
Sbjct: 265 EDFTRVTFKPDLSKFKMTELDDDIVALMSRRAYDVAGSTKGVKVYLNNK---------LL 315

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G + +V    +H       P ++     N   D+A+  ++   + V  F N+I    
Sbjct: 316 PVQGFKQYVDQYAKHNLDSQGEPYKVIYETANERWDVAITVSEKGFQQV-SFVNSIATTK 374

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   +T ++   ++K     K   SV     +      ++  + +P F SQTK
Sbjct: 375 GGRHVDYVADQITSKLIDTIKKK--IGKSGISVKPFQIKNHMWVFVNCLIENPTFDSQTK 432

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKG 403
           E L         +  +++     + +       IV+ V+     +      +   ++R  
Sbjct: 433 EALTLQSKSFGSKCELSERFVNSVMKCG-----IVEAVMAWVRFKQQETLDKKCSSKRTS 487

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKIL 458
            L          D   ++     L L EGDSA      G    GR R    + PLRGK+L
Sbjct: 488 KLKGVPKLEDANDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRDR--YGVFPLRGKML 545

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL---RYHKIIIMTDADVDGAHIRT 515
           NV      +++ + EI  LI  +G          + +   RY K+++M D D DG+HI+ 
Sbjct: 546 NVREGNHKQIMENAEINALIKIIGLQYRLKYDKDDDMKTLRYGKVMVMADQDQDGSHIKG 605

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIEL 574
           L++ F     P+LI   F+     P+   T+GK            ++  N ++       
Sbjct: 606 LVINFIHYNWPALIRRNFVEEFITPIVKATKGKEEYSFFSLPEYNEWRNNTENWKSYRIK 665

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  +  + + +  D  +     +      D +                      +
Sbjct: 666 YYKGLGTSTSKEAKEYFTDMARHRIRFRYAGDEDDSSI-------------DMAFSKRKI 712

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
             +     N++AEK ++   G       L  +  R +  +  +    +    +  +R   
Sbjct: 713 EDRKVWLTNWMAEKRDRREQGLTEEY--LYDKDTRSISFKDFVNKELVLFSNADNERSIP 770

Query: 695 NRIEENYLTILSLI----CNGDKIKIT 717
           + ++        ++       DK ++ 
Sbjct: 771 SLVDGLKPGQRKVLFTCFKRADKKEVK 797


>gi|20387128|dbj|BAB91264.1| gyrase B [Streptomyces roseoverticillatus]
 gi|308152547|dbj|BAJ22252.1| DNA gyrase subunit B [Streptomyces roseoverticillatus]
          Length = 399

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 183/401 (45%), Positives = 257/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A  + G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQQ-NEATGEHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNRGLTISLTDERPAHVDEEGKPLTVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I          +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVRYLNSRKGEVIHPTVIDFDAEDKERMLSLEVAMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   +P K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|317419224|emb|CBN81261.1| DNA topoisomerase 2-alpha [Dicentrarchus labrax]
          Length = 968

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 133/664 (20%), Positives = 250/664 (37%), Gaps = 62/664 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 21  YQKKTQLEHILLRPDSYIGSVEPVTQQMWVYDEDVGLNCRDVTFVPGLYKIFDEILVNAA 80

Query: 54  DESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I ++++  + + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 81  DNKQRDNKMSCIKISIDVENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 140

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    K    +++ ++ + +         S   + 
Sbjct: 141 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKESKKVFKQTWYDNMGRTGDSNIKSFNGEE 200

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +   + DT   +  R  +++ ++  V++    KR            
Sbjct: 201 YTCITFRPDLPKFKMSTLDKDTVALMTRRAYDIAGVSKGVRVEFNGKR---------LPI 251

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K   + + + +     N   ++ +  ++   + V  F N+I    GG
Sbjct: 252 AGFRSYVDMYLKDKVDEVGNSLTVVHEIVNNRWEVCLTMSEKGFQQV-SFVNSIATTKGG 310

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +      V     +      ++  + +P F SQTKE 
Sbjct: 311 RHIDYVADQVVGKLIEVVKKKNKAGVA---VKPFQVKNHMWLFVNCLIENPTFDSQTKEN 367

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +   +        + D             + I+  V   +  +      +    +   + 
Sbjct: 368 MTLQQKNFGSTCPLGDKFIKQ-ATSCGIVESIMNWVKFKAQSQL---NKKCSAVKHTKIK 423

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   ++     L L EGDSA      G    GR R    + PLRGK+LNV 
Sbjct: 424 GVPKLDDANDAGGKNSISCTLILTEGDSAKTLAVSGLGVVGRDR--YGVFPLRGKMLNVR 481

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  LG    ++  D      LRY KI+IMTD D DG+HI+ LL+
Sbjct: 482 EASLKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKIMIMTDQDQDGSHIKGLLI 541

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCD 577
            F     PSL+ + FL     P+  ++  K+            +  +Q         +  
Sbjct: 542 NFIHHNWPSLLRHNFLEEFITPIIKVSHKKTQLSFYSIPEFNSWKDSQPNHKSWKIKYYK 601

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +     K   P       +   I+  F+ +  +E    L + 
Sbjct: 602 GLGTSTSQEAKEYFSDMQRHRIPFKYAGPE------DDEAITLAFSKKKVEERKEWLTNF 655

Query: 638 LANR 641
           + NR
Sbjct: 656 MVNR 659


>gi|164425154|ref|XP_962372.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
 gi|157070812|gb|EAA33136.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
          Length = 1909

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 158/695 (22%), Positives = 259/695 (37%), Gaps = 71/695 (10%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GL 41
                 Y     Q L  L+ + KRP  YIG  +                         GL
Sbjct: 125 KTATEMY-----QKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVPGL 179

Query: 42  HHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           + +  E+L NA D S        + VT+N + G  +V +NG+GIP ++H  E     E+I
Sbjct: 180 YKIFDEILVNAADNSQRDSSMTFLKVTINRESGEISVENNGKGIPVEIHGTEKCYVPELI 239

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDN 157
              L AG  F+    K  GG +G G  + N  S    L  +    G  Y+ ++ + +   
Sbjct: 240 FGHLLAGSNFDDNEKKTVGGRNGYGAKLTNIFSREFTLECQDSVNGKRYKQTWTDNMSKM 299

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ----HRLREL-SFLNSSVQISLID 212
                 S        +TF P    F + D   D L+     R+ ++   LN      L  
Sbjct: 300 SPPKITSNKAADFVRITFRPDFSKFGMADGIDDDLEALLYRRVYDMAGTLNFKTYCGLYA 359

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-IDLAMRWNDGYHE 271
           K   + R+                    + +  + +  +  R      ++    +DG  +
Sbjct: 360 KAIAKERDE---------------VADGEDVTPATVIFEQQRSEGKLWEVGFTVSDGSFQ 404

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F NNI    GG+H++ +   +   +   ++K  G     ++      +  F   ++
Sbjct: 405 QV-SFVNNIATTSGGSHVNYIADQIIEVLMKELQKKKGKGHGLKTAN---VKNQFFIFIN 460

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             + +P FSSQTKE+L +   +          L     +   +++ I   +  A   RD 
Sbjct: 461 CLIDNPAFSSQTKEQLTTKPAKF----GSKCQLGDLFLKKVRQSEAIDNLLSFADKKRDK 516

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQ 448
                D ++RK + +   +         R  ++  L L EGDSA G A  GR        
Sbjct: 517 DLAKNDGSKRKRISNDKLIEANY--AGGRYSQECTLILTEGDSARGLAVAGRAILDPNRI 574

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            + PLRGK+LNV  A  D++L ++E+  +   LG   G+   D   LRY  ++IM D D+
Sbjct: 575 GVFPLRGKMLNVRDASADQILKNKEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDL 634

Query: 509 DGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGI---TRGKSLQYVKDEESLEDYLI 564
           DG+HI+ LL+ FF  Q PSL+    F      P+  +      K  Q ++   +L  Y  
Sbjct: 635 DGSHIKGLLINFFECQFPSLLRIPNFFQEFITPVVKVWQGPNPKKPQRLQGFFTLPQYE- 693

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
               +   EL       +         D  L    L K        T  E  +    F+ 
Sbjct: 694 EWKEAHRNELRRWKYKYLKGLGSSTTDDAQLYFTNLNKHLKEFDVMTREESEMFELAFSK 753

Query: 625 ESDQEINVSLAS-KLANRLNFIAEKSEKSWHGSIN 658
           +        LA  +    L+   EK   +   +  
Sbjct: 754 KKADARKEWLAKCEPGTYLDHSTEKISYTDFVNRE 788


>gi|1174742|sp|P41516|TOP2A_RAT RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|587515|emb|CAA86496.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 141/743 (18%), Positives = 276/743 (37%), Gaps = 74/743 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 33  YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAA 92

Query: 54  DESLEGY-ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           D          I VT+  +   ++ +NG+GIP   HK E +    +I  +L     ++  
Sbjct: 93  DNKQRDPKMSCIRVTMMRNNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD 152

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +    RE   +++ ++++ +     +       +  
Sbjct: 153 EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDMELKPFSGEDY 212

Query: 171 TEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T +TF P    F +Q  + D    +  R  +++     V++ L   R             
Sbjct: 213 TCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNR---------LPVK 263

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G  ++V    + K     + +++   + N   ++ +  ++   + +  F N+I    GG 
Sbjct: 264 GFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVCLTMSEKGFQQI-SFVNSIATSKGGR 322

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+  +   +  ++   V+K     K   +V  D  +       +  + +P F SQTKE +
Sbjct: 323 HVDYVADQIVSKLVDVVKKKN---KGGVAVKADQVKNHMWIFGNAVIENPTFDSQTKENM 379

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
                       +++             + I+  V   + ++      +    +   +  
Sbjct: 380 TLQAKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQIQL---NKKCSAVKHNRIKG 435

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVER 462
                   D   R+  +  L L EGDSA      G    GR +    + PLRGKILNV  
Sbjct: 436 IPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVRE 493

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLT 519
           A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+ 
Sbjct: 494 ASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLIN 553

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDS 578
           F     PSL+ + FL     P+  +++ K           E++        +    +   
Sbjct: 554 FIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSTNPNHKKWKVKYYKG 613

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            G  +  + + +  +  +     K   P       + A IS  F+ +   +    L    
Sbjct: 614 LGTSTSKEAKEYFANMKRHRIQFKYSGPE------DDAAISLAFSKKQVDDRKEWLT--- 664

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
               NF+ ++ ++   G   +   L  +    +     +    I    S  +R   + ++
Sbjct: 665 ----NFMEDRRQRKLLGLPEDY--LYGQTTMYLTYNDFINKELILFSNSDNERSIPSMVD 718

Query: 699 ENYLTILSLI----CNGDKIKIT 717
                   ++       DK ++ 
Sbjct: 719 GLKPGQRKVLFTCFKRNDKREVK 741


>gi|20387198|dbj|BAB91299.1| gyrase B [Streptomyces olivoverticillatus]
          Length = 399

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 181/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +KR+G  +   +  G    PL     A +++G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKRDGFRWTQDYKLGAPTAPLQK-NEATDESG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLARRFQEMAFLNKGLRISLTDFRADHVDEEGKPLTVEYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I ++       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDVEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|307180209|gb|EFN68242.1| DNA topoisomerase 2 [Camponotus floridanus]
          Length = 1502

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 146/747 (19%), Positives = 268/747 (35%), Gaps = 80/747 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +  +                      GL+ +  E+L NA
Sbjct: 25  YQKKSQLEHILLRPDTYIGSVEPVTEMMWVFDKEKDMMIQKDIKYVPGLYKIFDEILVNA 84

Query: 53  IDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        D+I + ++  + + +V +NG+GIP  +HKEE +    +I   L     ++
Sbjct: 85  ADNKQRDPKMDMIKIDIDSENNTISVWNNGKGIPVVIHKEENMYVPTMIFGHLLTSSNYD 144

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY----EMSFINGILDNPLVVTGSAG 166
            +  KV+GG +G G  + N  S    +        Y    + ++ + +            
Sbjct: 145 DEEEKVTGGRNGYGAKLCNIFSHRFTVETAT--KEYKKCLKQTWGDNMGKASEPRIKEYH 202

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
            D  T+VTF P    F +Q  + D    +  R  +++  +  V++ L   R         
Sbjct: 203 GDDFTKVTFSPDLSKFKMQSLDNDIVGLMSRRAYDVAASSKGVKVYLNGSR--------- 253

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
                 + +V +  + K+  + +P++I         ++A+  +D      + F N+I   
Sbjct: 254 IPVKNFKDYVDFYIKGKEDDVGNPLKIVYENCGPRWEVALTLSDK-GFQQMSFVNSIATT 312

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG H+  +   + +Q+   ++K   +      +     +      ++  + +P F SQT
Sbjct: 313 KGGRHVDHVTELIVKQLIETLKKKNKAGVA---IKPFQIKNHLWIFVNCLINNPTFDSQT 369

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE +         +  + D   A + +       +V+ VL  +  +  ++  +   + K 
Sbjct: 370 KENMTLQAKSFGSKCVLTDKFIASITKIG-----VVEAVLSWAKFKADSQLEKLGPKSKQ 424

Query: 404 V-LDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKI 457
             L          D       +  L L EGDSA      G A  GR +    I PLRGK+
Sbjct: 425 RKLHGIPKLEDANDAGTAKSLECTLILTEGDSAKTMAVSGIASIGRDK--YGIFPLRGKM 482

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIR 514
           LNV  A   ++L + EI  LI  LG    +     +    LRY K++IMTD D DG+HI+
Sbjct: 483 LNVREATHKQILENAEINNLIKILGLQYKKKYETRDDLKTLRYGKMMIMTDQDQDGSHIK 542

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
            LL+ F     PSL+   F+     P+   T+G            E +          ++
Sbjct: 543 GLLINFIHHNWPSLLKLNFIEEFITPIVKATKGSQTLSFFSLPEFEAWKKETENFHTYKI 602

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
                   S          A +  +  ++   +  +   E             ++     
Sbjct: 603 KYYKGLGTS---------TAKEAKEYFENMARHRIRFRYEGDRDDQNIIMAFSKKCVDQR 653

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
              L N +N    + E            L ++  R V     +    +        R   
Sbjct: 654 KDWLMNHMNETKRRKEIGLG-----ERYLYEKDTRTVSFSDFINVELVLYSNYDNVRSIP 708

Query: 695 NRIEENYLTILSLI----CNGDKIKIT 717
           N I+        ++       DK ++ 
Sbjct: 709 NMIDGFKPGQRKVMFTCLKRNDKREVK 735


>gi|45128555|gb|AAS55055.1| GyrB [Vibrio parahaemolyticus]
          Length = 374

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 219/376 (58%), Positives = 293/376 (77%), Gaps = 3/376 (0%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  + L I R G+I+  ++ +G  + PL V G A + TGT++ F PS++ FS
Sbjct: 1   GVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPETPLAVVGDA-DKTGTQIRFWPSAETFS 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+YD L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV +L+ +K P+
Sbjct: 60  NTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQHLNTNKTPI 118

Query: 244 MQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           ++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + S
Sbjct: 119 IEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAAITRTLNS 178

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           +++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + +
Sbjct: 179 FMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGE 238

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP
Sbjct: 239 KLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDP 298

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG
Sbjct: 299 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 358

Query: 483 TGIGQDSFDINKLRYH 498
            GIG+D  + +KLRYH
Sbjct: 359 CGIGRDEHNPDKLRYH 374


>gi|38259192|ref|NP_071519.2| DNA topoisomerase 2-alpha [Rattus norvegicus]
 gi|57964|emb|CAA79611.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 141/743 (18%), Positives = 276/743 (37%), Gaps = 74/743 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 33  YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAA 92

Query: 54  DESLEGY-ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           D          I VT+  +   ++ +NG+GIP   HK E +    +I  +L     ++  
Sbjct: 93  DNKQRDPKMSCIRVTMMRNNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD 152

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDTG 170
             KV+GG +G G  + N  S+   +    RE   +++ ++++ +     +       +  
Sbjct: 153 EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDMELKPFSGEDY 212

Query: 171 TEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T +TF P    F +Q  + D    +  R  +++     V++ L   R             
Sbjct: 213 TCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNR---------LPVK 263

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G  ++V    + K     + +++   + N   ++ +  ++   + +  F N+I    GG 
Sbjct: 264 GFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVCLTMSEKGFQQI-SFVNSIATSKGGR 322

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+  +   +  ++   V+K     K   +V  D  +       +  + +P F SQTKE +
Sbjct: 323 HVDYVADQIVSKLVDVVKKKN---KGGVAVKADQVKNHMWIFGNAVIENPTFDSQTKENM 379

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
                       +++             + I+  V   + ++      +    +   +  
Sbjct: 380 TLQAKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQIQL---NKKCSAVKHNRIKG 435

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVER 462
                   D   R+  +  L L EGDSA      G    GR +    + PLRGKILNV  
Sbjct: 436 IPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVRE 493

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLT 519
           A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+ 
Sbjct: 494 ASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLIN 553

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDS 578
           F     PSL+ + FL     P+  +++ K           E++        +    +   
Sbjct: 554 FIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSTNPNHKKWKVKYYKG 613

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
            G  +  + + +  +  +     K   P       + A IS  F+ +   +    L    
Sbjct: 614 LGTSTSKEAKEYFANMKRHRIQFKYSGPE------DDAAISLAFSKKQVDDRKEWLT--- 664

Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698
               NF+ ++ ++   G   +   L  +    +     +    I    S  +R   + ++
Sbjct: 665 ----NFMEDRRQRKLLGLPEDY--LYGQTTMYLTYNDFINKELILFSNSDNERSIPSMVD 718

Query: 699 ENYLTILSLI----CNGDKIKIT 717
                   ++       DK ++ 
Sbjct: 719 GLKPGQRKVLFTCFKRNDKREVK 741


>gi|83683050|emb|CAJ47369.1| DNA gyrase subunit B [Aeromonas molluscorum]
          Length = 372

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 221/375 (58%), Positives = 286/375 (76%), Gaps = 4/375 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + N TGTEV F PS+ 
Sbjct: 1   HGVGVSVVNALSEKLLLTIRRNGHVYEQTYHMGEPQAPLKQIGDS-NGTGTEVRFWPSAT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++YD L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYDILAKRLRELSFLNSGVSIRLEDER--DGREVHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q        +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHQKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
            +Y+++   SKK K S   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 NTYMDREDYSKKAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 238 MGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVERARFD+M+SSQE+GTLIT
Sbjct: 298 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVERARFDRMISSQEVGTLIT 357

Query: 480 ALGTGIGQDSFDINK 494
           ALG GIG+D ++ +K
Sbjct: 358 ALGCGIGRDEYNPDK 372


>gi|20387156|dbj|BAB91278.1| gyrase B [Streptomyces griseocarneus]
          Length = 399

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 180/401 (44%), Positives = 260/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + ++ +G+ +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGHRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +   +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKALTVGYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSLEVAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|19912121|dbj|BAB88372.1| DNA gyrase subunit B [Bacteroides fragilis]
          Length = 390

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 182/391 (46%), Positives = 256/391 (65%), Gaps = 9/391 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG+S VNALS+ +  ++ R G IY+  +  G    P+   G A + TGT+  F
Sbjct: 1   VSGGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVGIADH-TGTKQQF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEA 231
            P   IF+   ++Y  L  RLREL++LN+ ++ISL D+R        +  T + + G+  
Sbjct: 60  WPDDSIFTETIYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKHETFYSEEGLRE 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +++  ++ L+   I +   + NI I++A+ +N G+ EN+  + NNI   +GGTHL+G
Sbjct: 120 FVRFIESSREHLINDVIYLNTEKQNIPIEVAIMYNTGFSENIHSYVNNINTIEGGTHLAG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR +  Y E S   +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++E
Sbjct: 180 FRRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNE 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+  V + L+ +LEEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LP
Sbjct: 240 VMGAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADCS++DP+K ELFLVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S
Sbjct: 300 GKLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALES 359

Query: 472 QEIGTLITALGTGIGQDSF----DINKLRYH 498
           +EI  + TALG  IG +      +I+KLRYH
Sbjct: 360 EEIRNIYTALGVTIGTEEDSKAANIDKLRYH 390


>gi|148470186|gb|ABQ66041.1| gyrase b [uncultured bacterium]
          Length = 433

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 190/436 (43%), Positives = 263/436 (60%), Gaps = 22/436 (5%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGK ++K YK++GGLHGVGV VVNALS  L   +KR   IY   F  G+  
Sbjct: 1   EVIMTVLHAGGKLDKKVYKITGGLHGVGVHVVNALSRLLIAVVKRPEGIYYEKFEKGVPS 60

Query: 157 NPLVVTGSAGNDT-----------------GTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
             L                           G  + F P  D F   +F+Y  +  R++EL
Sbjct: 61  GGLQFVEKGSWGNTGEPEIDSIEPKLAQDHGLIIKFYPDPD-FEDLNFSYQVIHERIKEL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           +FLN  V IS+ D+R      +      G+  FV YL    + +++ PI      ++  +
Sbjct: 120 AFLNPQVAISIKDERINASEVMHFEX--GLSQFVDYLGEGHQSILKEPIYNLEETEDTVV 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           + A  +N+   E +  + NNI   +GGTH++G R+ L+R +  Y  K+    K   S++ 
Sbjct: 178 EFAFLYNNSTSEIMQSYVNNISTVEGGTHVTGFRAGLSRAVQDYA-KNHDLVKGVESIVS 236

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +VL +K+  P+F  QTK KL +S VR +V+S       ++ E  P  A+ IV
Sbjct: 237 DDVREGLVAVLHVKVIAPQFEGQTKSKLGNSTVRGIVQSSTEKYFKSYFESFPNIAQNIV 296

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           ++V+ A+  R+A+R A++L RRK  L+  +LPGKLADCS  DP K+EL++VEG+SAGGSA
Sbjct: 297 RRVIMAAAAREASRNAKELVRRKSALESGNLPGKLADCSSSDPAKAELYIVEGESAGGSA 356

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQ R+R+ QAILPLRGKILNVE+A   K L+++EI  LIT +GT I +DS D++KLRY K
Sbjct: 357 KQARTRDYQAILPLRGKILNVEKAADIKTLANEEIRNLITVMGTNI-KDSLDLSKLRYGK 415

Query: 500 IIIMTDADVDGAHIRT 515
           IIIMTDADVDG+HIRT
Sbjct: 416 IIIMTDADVDGSHIRT 431


>gi|68445356|dbj|BAE03179.1| DNA gyrase subunit B [actinobacterium Aac-57]
          Length = 399

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 176/401 (43%), Positives = 254/401 (63%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG SVVNALS+ L + +K +G+++   ++ G+   PL   G A ++TG
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYLRGVPTAPLKK-GEAVDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    +IF    +N++TL  R +E++FLN  V I LID+R     E          
Sbjct: 60  TTVTFWADDEIFETTTYNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNARSVHYK 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV +      + +    I          IS ++A++WN+ Y E+V  F N I 
Sbjct: 120 YDGGISDFVKHLNAAKGEMVHPQVIEFGAEDKERKISAEVALQWNNQYSESVYTFANVIQ 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSALT  +  Y ++    K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSALTNVVNRYAKEKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + ++ W + +P EAK I++K + A+  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEARTFVQKITYESMADWFDRNPNEAKDIIRKSIQAATARIAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKL+DC   +P + E+F+VEGDSAGGSAKQGR    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLSDCQSTNPVECEIFVVEGDSAGGSAKQGRDPRVQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+ALGTGI  D FD+++LRYHKI++
Sbjct: 360 KARIDKVLQNTEVQGLISALGTGI-HDDFDVSRLRYHKIVL 399


>gi|19912125|dbj|BAB88374.1| DNA gyrase subunit B [Cytophaga sp. I-482]
          Length = 391

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 189/392 (48%), Positives = 262/392 (66%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           VSG LHGVGVS VNALS  +K+ +  ++G IYE S+  G    P+   G   + TGT V 
Sbjct: 1   VSGSLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DKTGTTVW 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIE 230
           F+P  +IF+  ++ +D + +RLREL+FLN+ + I L D R  + +      T + +GGI+
Sbjct: 60  FMPDDEIFTHHEYVWDRVANRLRELAFLNAGITIILEDLRDVDEQGNPLSETFYSEGGIK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLD  K+ L+   + I+G + NI + +AM +N  + ENV+ + NNI   +GGTH+S
Sbjct: 120 EFVEYLDDSKEKLIDEAVYIEGEKANIPVQVAMSYNTSFSENVVSYVNNINTHEGGTHVS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + +Y +KS    K K  + GDD REG T+V+S+K+ +P+F  QTK KL +S
Sbjct: 180 GFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNS 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           +    V+S V+D L+ +LEE+P  AK IV+KV+ A+  R AAR+AR++ +RK V+   SL
Sbjct: 240 DAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMVQRKNVMSSTSL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCS +D   SEL+LVEGDSAGGSAKQGR RE QAILPLRGKILNVE+A+  K+  
Sbjct: 300 PGKLADCSSKDATISELYLVEGDSAGGSAKQGREREYQAILPLRGKILNVEKAQEHKIYD 359

Query: 471 SQEIGTLITALGTGIGQDSF----DINKLRYH 498
           ++EI  +ITA+G   G+D      D+ KLRYH
Sbjct: 360 NEEIKNMITAMGVRFGKDGDEKALDMEKLRYH 391


>gi|283132391|dbj|BAI63601.1| DNA gyrase subunit B [Leptospira inadai]
          Length = 391

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 191/393 (48%), Positives = 277/393 (70%), Gaps = 7/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + + G IY   +  GI  +P+ + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQRGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
            F P + IF+  DF +D L  R REL+FLN  + + + D R              + GGI
Sbjct: 60  RFKPDATIFTTVDFQFDILSARFRELAFLNKGLVLIIEDCRRGSEGENLLRNEFQFSGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL
Sbjct: 120 VSFVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            G R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV
Sbjct: 179 EGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+  
Sbjct: 239 NAEIKGIMQTLSSEGLTLFFEENPGITKKILEKCILSAKAREAARKARDLTRRKTVLEGG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+
Sbjct: 299 GLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 LSSEEIRVLVSALGTGIGEDGFNIDKIRYHKIM 391


>gi|73966011|ref|XP_863082.1| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 3
           [Canis familiaris]
          Length = 1533

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 133/664 (20%), Positives = 257/664 (38%), Gaps = 61/664 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 34  YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIGMNYREVTFVPGLYKIFDEILVNAA 93

Query: 54  DESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ + +  ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 94  DNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD 153

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++++ +     +       + 
Sbjct: 154 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELRPFNGED 213

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++     V++ L   +            
Sbjct: 214 YTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNK---------LPV 264

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     +P++I   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 265 KGFRSYVDMYLKDKVDETGNPLKIIHEQVNPRWEVCLTMSEKGFQQI-SFVNSIATSKGG 323

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE 
Sbjct: 324 RHVDYIADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKEN 380

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +            +++     +         I+  V   + ++      +    +   + 
Sbjct: 381 MTLQVKSFGSTCQLSEKFIKAVISLFPVLSNILNWVKFKAQIQL---NKKCSAVKHNRIK 437

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   R+  +  L L EGDSA      G    GR +    + PLRGKILNV 
Sbjct: 438 GIPKLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVR 495

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+
Sbjct: 496 EASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLI 555

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCD 577
            F     PSL+ + FL     P+  +++ K           E++  +     +    +  
Sbjct: 556 NFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 615

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  +  +     K   P       + A IS  F+ +   +    L   
Sbjct: 616 GLGTSTSKEAKEYFANMKRHRIQFKYSGPE------DDAAISLAFSKKQIDDRKEWLTHF 669

Query: 638 LANR 641
           + +R
Sbjct: 670 MEDR 673


>gi|35210349|dbj|BAC92686.1| gyrase B subunit [Sulfobacillus acidophilus]
          Length = 388

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 193/392 (49%), Positives = 261/392 (66%), Gaps = 4/392 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG+SVVNALS  L    +  G I+   +  G   + L   G   ++TG
Sbjct: 1   GGGYKVSGGLHGVGLSVVNALSKELTATSRFNGGIFVQHYAQGKPLDALTRIGDT-DETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            EV FLP  DIF    F+++T+ +RLRE +FLNS V + L D+ S           GG+ 
Sbjct: 60  FEVVFLPDPDIFEEVRFSFETIANRLREQAFLNSGVLLELKDEASGREMRYHY--TGGVV 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +FV YL+ ++  +   PI     RD + ++ A+++ND Y E +  F N I   +GG+H +
Sbjct: 118 SFVQYLNLNRDVIHPKPIAFSAERDGVFVETALQYNDSYTETLFTFANTIRTLEGGSHEA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G ++ALTR    Y  K    K    ++ GDD REG T +LS+K+P+P+F  QTK KL +S
Sbjct: 178 GFKAALTRVCNDYGRKLGLLKDADNNLSGDDVREGLTMILSVKLPEPQFEGQTKTKLGNS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EVR + E+ V +GLS + EE+P  AK I++K + A+  R+AAR+AR+LTRRK VL+ +SL
Sbjct: 238 EVRGITEAIVAEGLSTYFEENPSIAKRILEKAIAAARAREAARKARELTRRKSVLESSSL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL DC+ +DP +SELFLVEGDSAGGSAKQGR R+ QA+LPLRGKILNVERAR DK+L 
Sbjct: 298 PGKLTDCTSKDPAESELFLVEGDSAGGSAKQGRDRQFQAVLPLRGKILNVERARLDKILG 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ++EI  +ITA+GTGIG D FD+ K RYH+I+I
Sbjct: 358 NEEIRAMITAIGTGIG-DEFDLTKARYHRIVI 388


>gi|157167886|ref|XP_001656143.1| DNA topoisomerase/gyrase [Aedes aegypti]
 gi|108871009|gb|EAT35234.1| DNA topoisomerase/gyrase [Aedes aegypti]
          Length = 1300

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 135/745 (18%), Positives = 273/745 (36%), Gaps = 75/745 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDT----------DGE------------SGLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG            DGE             GL+ +  E+L NA
Sbjct: 34  YQKKSQLEHILLRPDTYIGSVEHLKETMWIYDGELKKMVQREINYVPGLYKIFDEILVNA 93

Query: 53  IDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            D     +       I + +N +  + ++ +NG+GIP  +HK E +    +I   L    
Sbjct: 94  ADNKQRDAKM---SAIKIDINQETNTVSIWNNGQGIPVVMHKGEKMFVPTMIFGHLLTSS 150

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLR--IKREGNIYEMSFINGILD-NPLVVTGS 164
            +N +  KV+GG +G G  + N  S+   +    K+    ++ ++ + +   +   +   
Sbjct: 151 NYNDEEEKVTGGRNGYGAKLCNIFSTKFTVETATKQYKKCFKQTWGDNMSKASEPKIKED 210

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
              +  T++TF P    F ++  + D +    R    + +S +   +     +    +  
Sbjct: 211 YSGEDYTKITFSPDLKKFKMEKLDNDIVGLMSRRAFDVAASTRGVSVYLNGTKLPVKSFK 270

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
                  ++    + ++  + S +++     N   ++A+  +D   + V  F N+I    
Sbjct: 271 ------DYIDLYIKDQQDDIGSQVKVVYENCNERWEVAVTLSDRGFQQV-SFVNSIATTK 323

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   + +Q+   ++K     K   ++     +      ++  + +P F SQTK
Sbjct: 324 GGRHVDYITDMIVKQLIEVLKKKN---KGGVNIKPFQVKNHMWVFINCLIVNPTFDSQTK 380

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E +         +  +++     + +       IV+ VL  +  +      +    +K  
Sbjct: 381 ENMTLQAKSFGSKCTLSEKFINNMSKIG-----IVESVLQWAKFKAQTELNKASGSKKSK 435

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKILNVE 461
           +          D   R+     L L EGDSA   A  G     R+   + PLRGK+LNV 
Sbjct: 436 VKGVPKLEDANDAGSRNSLNCTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKLLNVR 495

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   ++L + EI  LI  +G    +    ++    LRY K++IMTD D DG+HI+ LL+
Sbjct: 496 EATHKQILENAEINNLIKIIGLQYKKKYITMDDLKTLRYGKLMIMTDQDQDGSHIKGLLI 555

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEE-IELFC 576
            F     P L+   FL     P+   T+              E++      +      + 
Sbjct: 556 NFIHTNWPELLRLPFLEEFITPIVKATKKNGEELSFFSLPEFEEWKTETPNAHTYNIKYY 615

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
              G  +  + + +  +  +   L K        +  +   I+  F+ +   +    L S
Sbjct: 616 KGLGTSTSKEAKEYFQNMERHRILFK------YDSTQDDEAITMAFSKKCVDQRKEWLTS 669

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
            +         +  +           L  +  + +  +  +    +    S   R     
Sbjct: 670 HM---------EENRHRKQVGLPERYLYTKTTKAITYKEFINLELVLFSNSDNIRSIPCM 720

Query: 697 IEENYLTILSLI----CNGDKIKIT 717
           ++        ++       DK ++ 
Sbjct: 721 VDGLKPGQRKVMFTCFKRNDKREVK 745


>gi|148616484|gb|ABQ96985.1| GyrB [Nocardiopsis alkaliphila]
          Length = 392

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 178/394 (45%), Positives = 258/394 (65%), Gaps = 6/394 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SY VSGGLHGVGVSVVNALS+ L++ I+++G+++   +        L   G A + TGT+
Sbjct: 1   SYAVSGGLHGVGVSVVNALSTALEVEIRKDGHVWRQRYEMTAPTGALDK-GEATDQTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----ITMFYKGG 228
           +TF     IF    ++++TL  RL+E++FLN  + I++ D+R     +     T  Y+ G
Sbjct: 60  ITFWADGTIFETTTYSFETLSRRLQEMAFLNKGLAITIRDERPEYTDDGPVVQTYHYEEG 119

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +  FV Y++  K+P   S +  +   + I++++AM+WN  Y  +V  F N I   +GGTH
Sbjct: 120 LADFVGYINSKKEPAHASIVSFEEEGEGIAVEVAMQWNQSYTSSVHTFANTINTTEGGTH 179

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G RSALT  +  Y       ++ + ++ GDD REG T+++S+K+ DP+F  QTK KL 
Sbjct: 180 EEGFRSALTTLVNRYARDQKLLREKEDNLTGDDIREGLTAIISVKLADPQFEGQTKTKLG 239

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E +S V+   N+ L  W E +P EAK IV K   A+  R AAR+ARDLTRRK +L+  
Sbjct: 240 NTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAARARVAARQARDLTRRKTLLETT 299

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKL+DC   +P++ EL++VEGDSAGGSAK GR+  NQAILP+RGKILNVE++R D++
Sbjct: 300 SLPGKLSDCQSTNPEECELYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEKSRIDRI 359

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L + E+  +ITALGTGI +D FD  KLRYHKI++
Sbjct: 360 LKNNEVQAIITALGTGIHED-FDAEKLRYHKIVL 392


>gi|20387124|dbj|BAB91262.1| gyrase B [Streptomyces aureoverticillatus]
 gi|20387192|dbj|BAB91296.1| gyrase B [Streptomyces nobilis]
 gi|308152575|dbj|BAJ22266.1| DNA gyrase subunit B [Streptomyces aureoverticillatus]
          Length = 411

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 186/413 (45%), Positives = 259/413 (62%), Gaps = 23/413 (5%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L + IK +G  +   + +G    PL     A  +TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTKLSVEIKTDGYRWTQDYKSGAPTAPLER-HEATEETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    DIF   +++++TL  R +E++FLN  + I L D+R                
Sbjct: 60  TTVTFWADGDIFETTEYSFETLARRFQEMAFLNKGLTIKLTDERESAKATAGADSAEATD 119

Query: 216 ---PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGY 269
               E R +T  Y+GGI  FV+Y   R    +  + I I+       +S+++AM+WN  Y
Sbjct: 120 DTVEEVRTVTYHYEGGIVDFVTYLNSRKGDVIHPTVIDIEAEDKERMLSVEIAMQWNSQY 179

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E V  F N I   +GGTH  G R+A+T  +  Y       ++   ++ G+D REG T++
Sbjct: 180 SEGVYSFANTIHTHEGGTHEEGFRAAMTGLVNRYARDKKLLREKDDNLTGEDIREGLTAI 239

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+ +P+F  QTK KL ++E ++ V+  V++ L+ W + +P EA  I++K + A+  R
Sbjct: 240 ISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIIRKGIQAATAR 299

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AAR+ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QA
Sbjct: 300 VAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQA 359

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ILP+RGKILNVE+AR DK+L +QEI  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 ILPIRGKILNVEKARVDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIIL 411


>gi|23451183|gb|AAN32696.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 371

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 213/374 (56%), Positives = 277/374 (74%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ LTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTGLTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  G D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGXDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSA GSAK   +R+NQAILPL+GKILNVE+AR DKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAXGSAKXXXNRKNQAILPLKGKILNVEKARXDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|308152539|dbj|BAJ22248.1| DNA gyrase subunit B [Rhodococcus sp.]
          Length = 421

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 182/424 (42%), Positives = 254/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFQWHQTYTDSKP-GEL-VKGEATKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVTFWADPNIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVAD 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +     Y GG+E +V +++R K+P+  S +          
Sbjct: 119 APKTAEDESAEAEAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|194879545|ref|XP_001974253.1| GG21630 [Drosophila erecta]
 gi|190657440|gb|EDV54653.1| GG21630 [Drosophila erecta]
          Length = 1446

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 135/742 (18%), Positives = 260/742 (35%), Gaps = 71/742 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 14  YQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQREISFVPGLYKIFDEILVNA 73

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I + ++ +    +V +NG+GIP  +HKE+ +    +I   L     +N
Sbjct: 74  ADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMHKEQKMYVPTMIFGHLLTSSNYN 133

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   +    RE    ++ ++ N +     V        
Sbjct: 134 DDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTWGNNMGKASDVQIKDFNGT 193

Query: 169 TGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             T +TF P    F ++  + D    +  R  +++  +  V + L   +           
Sbjct: 194 DYTRITFSPDLAKFKMESLDEDIVALMSRRAYDVAASSKGVSVFLNGNKLAVRNFKDYID 253

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                  V   D    P ++    +   R  ++   + R         + F N+I    G
Sbjct: 254 L-----HVKSTDDDSGPPIKIVHEVANERWEVACCPSDR-----GFQQVSFVNSIATYKG 303

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G H+  +   L +Q+   ++K     K   ++     R      ++  + +P F SQTKE
Sbjct: 304 GRHVDHVVDNLIKQLLEVLKKKN---KGGINIKPFQVRNHLWVFVNCLIENPTFDSQTKE 360

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
            +   +     +  +++     + +       IV+ VL  +  +     A+   R+   +
Sbjct: 361 NMTLQQKGFGSKCTLSEKFINNMSKSG-----IVESVLAWAKFKAQNDIAKTGGRKSSKI 415

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVER 462
                     +   ++     L L EGDSA   A  G     R    + PLRGK+LNV  
Sbjct: 416 KGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRNFYGVFPLRGKLLNVRE 475

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLT 519
           A F ++  + EI  L   +G    +     +    LRY K++IMTD D DG+HI+ LL+ 
Sbjct: 476 ANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLIN 535

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           F     P L+   FL     P+   T+             E++  + +      +     
Sbjct: 536 FIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNIKYYKG 595

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
              S          + +  +  +D   +      + +V          ++   S    L 
Sbjct: 596 LGTS---------TSKEAKEYFQDMERHRILFKYDGSVDDESIVMAFSKKHIESRKVWLT 646

Query: 640 NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
           N ++ +  + E            L  +  + +     +    +    +  +R   + ++ 
Sbjct: 647 NHMDEVKRRKELGL-----PERYLYTKGTKHISYADFINLELVLFSNADNERSIPSLVDG 701

Query: 700 NYLTILSLI----CNGDKIKIT 717
                  ++       DK ++ 
Sbjct: 702 LKPGQRKVMFTCFKRNDKREVK 723


>gi|86169555|gb|ABC87017.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris]
          Length = 393

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 177/394 (44%), Positives = 258/394 (65%), Gaps = 3/394 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDT 169
              YKVSGGLHGVG SVVNALS+ L +++ R+  +Y M F  G +   +         + 
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIER 60

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F P +DIF     +NY TL  R+REL+FLN  ++IS+ DKR  EP + +  ++GG
Sbjct: 61  GTIVHFKPDTDIFRETTTYNYKTLLTRVRELAFLNKGLRISIADKRLEEPIKESFNFEGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ +V YL+  K+ +   P+ ++G  + I ++ A+++     +++  F NNI   +GGTH
Sbjct: 121 IKEYVQYLNEDKQVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFANNINTYEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ALTR I  Y  KS   K    S+ G+D REG T+++SIK PDP+F  QTK KL 
Sbjct: 181 ETGFKTALTRVINDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +S+ R   +   ++  S ++ E+P  A+ IV+K + A   R AA+RAR++TR++  L+I 
Sbjct: 241 NSDARQATDRMFSETFSRFMMENPNVARQIVEKGVLAQKARLAAKRAREMTRKQSGLEIG 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLAD +  DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNV +A  +++
Sbjct: 301 NLPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKASLERV 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L+++EI +L TA+GTG G D F++ K  YHK+II
Sbjct: 361 LANEEIRSLFTAMGTGFG-DDFNVEKANYHKVII 393


>gi|119226166|dbj|BAF41062.1| DNA gyrase subunit B [Rhodococcus coprophilus]
          Length = 421

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 177/424 (41%), Positives = 254/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ L++ I  +G  +E ++ +      L + G     TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTTLEVEIDCDGYHWEQTYTHSKP-GEL-IQGEPTTRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T V F P  DIF    FN++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTVRFWPDPDIFETTTFNFETVARRLQEMAFLNKGLTITLTDERVLPEEVTDEVVLETAD 118

Query: 214 ---------------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                          +  + +     Y GG+E +V +L+R K P+  S +          
Sbjct: 119 APKTAEDQELEAQKPQVHKVKTRVYHYPGGLEDYVRHLNRTKSPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ 
Sbjct: 179 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ +S W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP K E+++VEGDSAGGS
Sbjct: 299 VTKAVSSAHARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI ++ FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHEE-FDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|27901573|dbj|BAC55907.1| DNA gyrase subunit B [Rhodococcus jostii]
 gi|108860567|dbj|BAE95998.1| DNA gyrase B [Rhodococcus jostii]
          Length = 421

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 182/424 (42%), Positives = 253/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G    +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFRWTQTYTDSKP-GEL-VKGEPTKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVTFWADPNIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVAD 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +     Y GG+E +V +++R K+P+  S +          
Sbjct: 119 APKTAEDESAEAEAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  ++LS+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAILSVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|110612685|gb|ABG78305.1| GyrB [uncultured bacterium]
          Length = 393

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 181/398 (45%), Positives = 264/398 (66%), Gaps = 7/398 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  +YKVSGGLHGVGVSVVNALS  L L I ++G  +   +  G  D+PL VTG + + 
Sbjct: 1   FDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYRKGAPDSPLAVTG-SSDR 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F P   I     F+YD L HR RELSFLN S+ I+L ++ +   RE     +GG
Sbjct: 60  TGTAIRFYPDLTIMETDQFSYDVLAHRFRELSFLNPSLTITLAEEET--LRESVFHDEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGT 287
           I +F+S+++ +K+ L +     +   +  + +++ ++ D    E +L + NNIP ++GG+
Sbjct: 118 IRSFLSFVNENKRVLHEPLFFRKVLENGATFEISFQYQDTTDAETLLSYVNNIPTREGGS 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+ G RSALT+ +  ++     +K ++  V G+D REG ++++SIK+P+P+F  QTK KL
Sbjct: 178 HVRGFRSALTKVVNRFIRDKNLNKGEE--VKGEDIREGLSAIVSIKIPNPQFEGQTKAKL 235

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            SS V   +E+F+++ L    E+    A+ I  K + ++  R+AAR+AR+LT+RK VL+ 
Sbjct: 236 GSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQAREAARKARELTKRKNVLEG 295

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FD 466
           ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R  QAILPL+GKILNVER +  +
Sbjct: 296 SNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVERTKGVE 355

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           K ++  E+   ITA+G G+G + F +  LRYHKIIIMT
Sbjct: 356 KFITHDEVRAPITAVGCGLGDEDFSLKNLRYHKIIIMT 393


>gi|51571587|emb|CAH18960.1| gyrase B [Corallococcus coralloides]
          Length = 376

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 201/379 (53%), Positives = 268/379 (70%), Gaps = 3/379 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGV+ VN LS W K+RI+R G + E  +  G+ ++P    G   +  GT +
Sbjct: 1   YKVSGGLHGVGVTCVNFLSEWFKVRIQRNGKVXEQGYARGVANSPPTEVG-TTDKRGTMI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P   I    DFN++TL  RLREL+FLN+ + I++ D+R+ +       + GGI +FV
Sbjct: 60  HFKPDPTIMETADFNFETLSQRLRELAFLNAGLHITIRDERTQKD--DDFKFDGGIASFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG +
Sbjct: 118 EYLNKAKEALHDKPVFIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFK 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+
Sbjct: 178 AALTRTLNSYAEKGGAWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            +VE  VND L+++LEE+P  AK +V KV DA   R AAR+AR+  RRKGVLD   LPGK
Sbjct: 238 GLVEQMVNDQLASFLEENPPVAKKVVAKVGDACRARIAARKARETVRRKGVLDGGGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC  RDP++SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S E
Sbjct: 298 LADCQSRDPQESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAE 357

Query: 474 IGTLITALGTGIGQDSFDI 492
           I TLITALGTGIG + +D 
Sbjct: 358 IVTLITALGTGIGAEDYDP 376


>gi|301779127|ref|XP_002924981.1| PREDICTED: DNA topoisomerase 2-alpha-like [Ailuropoda melanoleuca]
          Length = 1533

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 134/664 (20%), Positives = 255/664 (38%), Gaps = 62/664 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 34  YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIGINYREVTFVPGLYKIFDEILVNAA 93

Query: 54  DESLEG-YADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ + +  ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 94  DNKQRDPNMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD 153

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++++ +     +       + 
Sbjct: 154 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGED 213

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++     V++ L   +            
Sbjct: 214 YTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNK---------LPV 264

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     +P++I   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 265 KGFRSYVDMYLKDKVDETGNPLKIIHEQVNPRWEVCLTMSEKGFQQI-SFVNSIATSKGG 323

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE 
Sbjct: 324 RHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKEN 380

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +            +++             + I+  V   +         +    +   + 
Sbjct: 381 MTLQVKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQ---VQLNKKCSAVKHNRIK 436

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   R+  +  L L EGDSA      G    GR +    + PLRGKILNV 
Sbjct: 437 GIPKLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVR 494

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+
Sbjct: 495 EASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLI 554

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCD 577
            F     PSL+ + FL     P+  +++ K           E++  +     +    +  
Sbjct: 555 NFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +     K   P       + A IS  F+ +   +    L   
Sbjct: 615 GLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDAAISLAFSKKQIDDRKEWLTHF 668

Query: 638 LANR 641
           + +R
Sbjct: 669 MEDR 672


>gi|19912135|dbj|BAB88379.1| DNA gyrase subunit B [Chitinophaga pinensis]
          Length = 394

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 188/395 (47%), Positives = 261/395 (66%), Gaps = 13/395 (3%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  L + ++REG ++E  +  G+    +   G   + TGT V F
Sbjct: 1   VSGGLHGVGVSCVNALSDKLHVTVRREGKLFEQEYQRGVPQYAVREIG-TSDSTGTTVHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEA 231
            P ++IF    +N + L  RLREL++LN  ++I+L D R  +        T + +GGI  
Sbjct: 60  KPDNEIFKETIYNREILAGRLRELAYLNRKIKITLTDDREKDEAGNSVTETFYSEGGIIE 119

Query: 232 FVSYLDRH--KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           FV  LDR+  +  L+  PI I+      N+++++A+ +ND + EN+  + NNI   +GGT
Sbjct: 120 FVQMLDRNGRRNGLLPDPIFIEAHDASSNVAVEVAVIYNDSFSENIFSYVNNINTIEGGT 179

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H++G R A+TR   SY +K+   +K K  V GDD REG ++++S+K+P+P+F  QTK KL
Sbjct: 180 HVAGFRRAITRIFKSYGDKNKMFEKTKIEVTGDDFREGLSAIISVKVPEPQFEGQTKTKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +S+V  VV+S V   L A+LEEHP EAKII+ KV+ A+  R+AAR+AR + +RK VL  
Sbjct: 240 GNSDVMGVVDSSVAAVLDAYLEEHPREAKIIINKVVLAAQAREAARKARQMVQRKSVLSG 299

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           + LPGKLADCSE DP+K EL+LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A   K
Sbjct: 300 SGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKILNVEKAMEHK 359

Query: 468 MLSSQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           +  ++EI  + TALG  IG +  D     +KLRYH
Sbjct: 360 IYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYH 394


>gi|83758696|dbj|BAE54519.1| DNA gyrase subunit B [Rhodococcus sp. TCH14]
          Length = 421

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 182/424 (42%), Positives = 254/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFRWNQTYTDSKP-GEL-VKGEATKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVTFWADPNIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVAD 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +     Y GG+E +V +++R K+P+  S +          
Sbjct: 119 APKTAEDESAEAGAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|186920213|gb|ACC95395.1| DNA gyrase B subunit [Gordonia araii]
          Length = 420

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 181/423 (42%), Positives = 248/423 (58%), Gaps = 35/423 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L I R+G ++   +   +    L+  G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVELEIARDGFVWTQDYERAVP--GLLKKGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T   F P  DIF    F+ +T+  RL+E++FLN  + I+L D R  +   I         
Sbjct: 59  TTTRFWPDGDIFETTTFSAETVARRLQEMAFLNKGLTITLTDNRISDDEAIAEADLDGDG 118

Query: 222 -----------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                                  T  Y  G+  ++ +L+R K P+  S I   G  +   
Sbjct: 119 TDKAETVKSEEEKKAQAAIVRTRTYHYPDGLVDYIKHLNRTKTPIHSSVIGFSGKGEGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + 
Sbjct: 179 VEIAMQWNSGYAESVHTFANTINTHEGGTHEEGFRAALTATVNKYAADKKLVKEKDGKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P EAK I
Sbjct: 239 GDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFEANPAEAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++K +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 IRKAVDSAQARIAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIKKLRYH 417

Query: 499 KII 501
           KI+
Sbjct: 418 KIV 420


>gi|300508134|dbj|BAJ10899.1| DNA gyrase subunit B [Pseudomonas tuomuerensis]
          Length = 375

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 215/378 (56%), Positives = 285/378 (75%), Gaps = 4/378 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L + I+R G ++E ++++G+   PL   G     TGT++ F PS+  
Sbjct: 1   GVGVSVVNALSEELVMTIRRAGKVWEQTYVHGVPQAPLAAVGETE-GTGTQIHFKPSAQT 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV YL+ +K 
Sbjct: 60  FRNIHFSWDILAKRLRELSFLNSGVGIVLRDERSGKE--ELFKYEGGLKAFVEYLNTNKT 117

Query: 242 PLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            +       +Q   D + +++A++WNDG++EN+LCFTNNIPQ+DGGTHL+G RSALTR +
Sbjct: 118 AVNSVFHFTVQREEDGVGVEVALQWNDGFNENILCFTNNIPQRDGGTHLAGFRSALTRNL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NNYIEAEGLAKKFKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               + +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 238 GKFFADFLLENPNDAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 298 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINKLRYH 498
           LG GIG+D ++I+KLRYH
Sbjct: 358 LGCGIGRDEYNIDKLRYH 375


>gi|2909391|emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 135/685 (19%), Positives = 261/685 (38%), Gaps = 70/685 (10%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N + +  DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQMNKKKNE-DAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 71

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 72  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 131

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    K    +++ 
Sbjct: 132 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASKEYKKMFKQ 191

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 192 TWMDNMGRAGDMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 251

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 252 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNALKVVHEQVNPRWEVCLTM 302

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 303 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKN---KGGVAVKAHQVKNH 358

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTKE +            +++             + I+  V   
Sbjct: 359 MWIFVNALIENPSFDSQTKENMTLQAKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFK 417

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAK 440
           + ++      +    +   +          D   R+  +  L L EGDSA      G   
Sbjct: 418 AQIQL---NKKCSAVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGV 474

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRY 497
            GR +    + PLRGKILNV  A   +++ + EI  +I  +G    ++  D +    LRY
Sbjct: 475 VGRDK--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRY 532

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++ K         
Sbjct: 533 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQELAFYSLP 592

Query: 558 SLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
             E++  +     +    +    G  +  + + +  D  +     K   P       + A
Sbjct: 593 EFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDA 646

Query: 617 VISGVFNCESDQEINVSLASKLANR 641
            IS  F+ +   +    L   + +R
Sbjct: 647 AISLAFSKKQVDDRKEWLTHFMEDR 671


>gi|195164670|ref|XP_002023169.1| GL21103 [Drosophila persimilis]
 gi|194105254|gb|EDW27297.1| GL21103 [Drosophila persimilis]
          Length = 1451

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 133/739 (17%), Positives = 263/739 (35%), Gaps = 65/739 (8%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 13  YQKKSQLEHILLRPDSYIGSVEFTKELMWVYDFEKARMIQREIAFVPGLYKIFDEILVNA 72

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I + ++ +    ++ +NG+GIP  +HKE+ +    +I   L     +N
Sbjct: 73  ADNKQRDKSMNTIKIDIDAEKNVVSIWNNGQGIPVTMHKEQKMYVPTMIFGHLLTSSNYN 132

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLR--IKREGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   +    K+    ++ ++ + +     V        
Sbjct: 133 DDEKKVTGGRNGYGAKLCNIFSTSFTVETATKQYKKNFKQTWGSNMSKASDVTIKDFNGT 192

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
             T +TF P    F ++  + D +    R    + +S +   +     +           
Sbjct: 193 DFTRITFSPDLAKFKMERLDEDIVALMSRRAFDVAASSKGVSVFLNGNKLTVKNFK---- 248

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
              ++    +++      PI+I     N   ++A   +D   + V  F N+I    GG H
Sbjct: 249 --DYIDLHVKNQDDDCGQPIKIVHEVANERWEVACCPSDRGFQQV-SFVNSIATTKGGRH 305

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           +  +   + +Q+   ++K     K   ++     R      ++  + +P F SQTKE + 
Sbjct: 306 VDHVVDNVIKQLIEVLKKKN---KGGINIKPFQVRNHLWIFVNCLIENPTFDSQTKENMT 362

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
                   +  +++   + L +       IV+ VL  +  +     A+   R+   +   
Sbjct: 363 LQAKGFGSKCTLSEKFISSLSKSG-----IVESVLAWAKFKAQNDIAKTGGRKSSKIKGI 417

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVERARF 465
                  +   ++     L L EGDSA   A  G     R    + PLRGK+LNV  A F
Sbjct: 418 PKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNVREANF 477

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLTFFF 522
            ++  + EI  L   +G    +     +    LRY K++IMTD D DG+HI+ LL+ F  
Sbjct: 478 KQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFVH 537

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
              P L+   FL     P+  +T+             E++ ++        +        
Sbjct: 538 TNWPELLRLPFLEEFITPIVKVTKKNEELSFYSLPEFEEWKMDTPNHHTYNVKYYKGLGT 597

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           S          + +  +  +D   +      +  V          ++   S    L N +
Sbjct: 598 S---------TSKEAKEYFQDMERHRILFKYDGQVDDDNIMMAFSRKHIESRKVWLTNHM 648

Query: 643 NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
           + +  + E            L  +  + +     +    +    +  +R   + ++    
Sbjct: 649 DEVKRRRELGL-----PERYLYTKGTKHISYSDFINLELVLFSNADNERSIPSLVDGLKP 703

Query: 703 TILSLI----CNGDKIKIT 717
               ++       DK ++ 
Sbjct: 704 GQRKVMFTCFKRNDKREVK 722


>gi|327200401|gb|AEA36080.1| DNA gyrase subunit B [Rhizobium gallicum]
          Length = 358

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 255/358 (71%), Positives = 309/358 (86%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R+G I+EMSF +G+ D PL VTG AG+DTGTEV+F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKVTGEAGSDTGTEVSF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +PS+  F++ DF+Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+EAFVSY
Sbjct: 61  MPSTGTFTMTDFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEEMRYDGGLEAFVSY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+A
Sbjct: 121 LDRAKKPLVDKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+ SY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVVSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS W EEHP EAK++V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALSTWFEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|27530801|dbj|BAC54048.1| DNA gyrase subunit B [Gordonia amarae]
 gi|27530825|dbj|BAC54060.1| DNA gyrase subunit B [Nocardia carnea]
          Length = 418

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 181/421 (42%), Positives = 253/421 (60%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  +  +G  +  ++ + +   PL V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQTYKDAVP-GPL-VQGEPTKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F     IF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPAIFETTTYNFETISRRLQEMAFLNKGLTIVLTDERVSATEVTDEMVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+E FV +++R K+P+  S +   G      +++
Sbjct: 119 APKHDEGGEKPAVEHKVKARTYHYPGGLEDFVRHINRTKQPIHNSAVSFNGKGPGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K    ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI KLRYHKI+
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGI-HDEFDIAKLRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|327200407|gb|AEA36083.1| DNA gyrase subunit B [Rhizobium tropici]
          Length = 358

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 256/358 (71%), Positives = 311/358 (86%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R+G I+EMSF +G+ D PL  TG AG++TGTEV+F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKETGDAGDETGTEVSF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +PSS+ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFVSY
Sbjct: 61  MPSSETFTMIEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVKQEELLYDGGLEAFVSY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+Q P+ I+  +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+A
Sbjct: 121 LDRAKKPLVQKPVSIRSEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY + S  +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYADSSGITKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP EAK++V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALSTWLEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|291405994|ref|XP_002719184.1| PREDICTED: DNA topoisomerase II, alpha isozyme-like [Oryctolagus
           cuniculus]
          Length = 1181

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 139/685 (20%), Positives = 261/685 (38%), Gaps = 69/685 (10%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQMNKIKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQHMWVYDEDVGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    RE   +++ 
Sbjct: 133 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ 192

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +   S   +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 193 TWMDNMGRAGEMELKSFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 252

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     +P+++   + N   ++ +  
Sbjct: 253 VKVFLNGNK---------LPVKGFRSYVDMYLKDKVDETGNPLKVIHEQVNHRWEVCLTM 303

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 304 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVAKLVDVVKKKN---KGGVAVKAHQVKNH 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTKE +            +++             + I+  V   
Sbjct: 360 MWIFVNALIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFK 418

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAK 440
           +         +    +   +          D   R+  +  L L EGDSA      G   
Sbjct: 419 AQ---VQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGV 475

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRY 497
            GR +    + PLRGKILNV  A   +++ + EI  +I  +G    ++  D +    LRY
Sbjct: 476 VGRDK--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRY 533

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  ++R K         
Sbjct: 534 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSRNKQEMAFYSLP 593

Query: 558 SLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
             E++  +     +    +    G  +  + + +  D  +     K   P       + A
Sbjct: 594 EFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDA 647

Query: 617 VISGVFNCESDQEINVSLASKLANR 641
            IS  F+ +   +    L   + +R
Sbjct: 648 AISLAFSKKQIDDRKEWLTHFMEDR 672


>gi|209863309|gb|ACI88754.1| DNA gyrase subunit B [Aeromonas sp. JH89]
          Length = 366

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 220/369 (59%), Positives = 279/369 (75%), Gaps = 3/369 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  I
Sbjct: 1   GVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAI 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K 
Sbjct: 60  FSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + 
Sbjct: 118 PIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 SYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMG 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+D
Sbjct: 238 EKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL
Sbjct: 298 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 357

Query: 482 GTGIGQDSF 490
           G GIG+D +
Sbjct: 358 GCGIGRDEY 366


>gi|20387230|dbj|BAB91315.1| gyrase B [Streptomyces tropicalensis]
          Length = 399

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 180/401 (44%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + ++ +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGYRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +   +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKALTVGYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSLEVAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|47523094|ref|NP_999049.1| DNA topoisomerase 2-alpha [Sus scrofa]
 gi|6094498|sp|O46374|TOP2A_PIG RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|2668414|dbj|BAA23778.1| topoisomersae II [Sus scrofa]
          Length = 1533

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 134/664 (20%), Positives = 256/664 (38%), Gaps = 62/664 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 34  YQKKTQLEHILLRPDTYIGSVESVTQQMWVYDEDIGINYREVTFVPGLYKIFDEILVNAA 93

Query: 54  DESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ + +  ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 94  DNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD 153

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  KV+GG +G G  + N  S+   +    RE   +++ ++++ +     +       + 
Sbjct: 154 EEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGED 213

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++     V++ L   +            
Sbjct: 214 YTCITFHPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNK---------LPV 264

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     +P++I   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 265 KGFRSYVDLYLKDKVDETGNPLKIIHEQVNHRWEVCLTMSEKGFQQI-SFVNSIATSKGG 323

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE 
Sbjct: 324 RHVDYVADQIVAKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKEN 380

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +            +++             + I+  V   +         +    +   + 
Sbjct: 381 MTLQVKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQ---VQLNKKCSAVKHNRIK 436

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   R+  +  L L EGDSA      G    GR +    + PLRGKILNV 
Sbjct: 437 GIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVR 494

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+
Sbjct: 495 EASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLI 554

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCD 577
            F     PSL+ + FL     P+  +++ K           E++  +     +    +  
Sbjct: 555 NFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  D  +     K   P       + A IS  F+ +   +    L   
Sbjct: 615 GLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDAAISLAFSKKQIDDRKEWLTHF 668

Query: 638 LANR 641
           + +R
Sbjct: 669 MEDR 672


>gi|195438268|ref|XP_002067059.1| GK24224 [Drosophila willistoni]
 gi|194163144|gb|EDW78045.1| GK24224 [Drosophila willistoni]
          Length = 1453

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 136/743 (18%), Positives = 259/743 (34%), Gaps = 73/743 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 17  YQKKTQLEHILLRPDSYIGSVEYTKELMWVYDFENNRMVQREISFVPGLYKIFDEILVNA 76

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I + ++ +    ++ +NG+GIP  +HKE+ +    +I   L     +N
Sbjct: 77  ADNKQRDKSMNAIKIDIDAEKNVISIWNNGQGIPVTMHKEQKMYVPTMIFGHLLTSSNYN 136

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLR--IKREGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   L    K+    ++ ++ N +              
Sbjct: 137 DDEKKVTGGRNGYGAKLCNIFSTSFTLETATKQYKKSFQQTWANNMGKASEANIKDFNGT 196

Query: 169 TGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             T +TF P    F ++  + D    +  R  +++     V + L   +           
Sbjct: 197 DFTRITFSPDLSKFKMEKLDEDIVALMSRRAFDVAASTKGVSVFLNGNKLSVKNFKDYID 256

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                  +   D      ++      G R  ++   + R         + F N+I    G
Sbjct: 257 L-----HIKNQDSDSGQPIKVVYEACGERWEVACCPSDR-----GFQQVSFVNSIATYKG 306

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G H+  +   + +Q+   ++K     K   ++     R      ++  + +P F SQTKE
Sbjct: 307 GRHVDHVVDGVIKQLIEVLKKKN---KGGINIKPFQVRNHLWIFVNCLIENPTFDSQTKE 363

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
            +         +  +++   A + +       IV+ VL  +  +     A+   R+ G +
Sbjct: 364 NMTLQAKSFGSKCTLSEKFIANVSKSG-----IVESVLAWAKFKAQNDIAKTGGRKSGKI 418

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVER 462
                     +   ++  +  L L EGDSA   A  G     R    + PLRGK+LNV  
Sbjct: 419 KGIPKLEDANEAGGKNSIQCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNVRE 478

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLT 519
           A F ++  + EI  L   +G    +     +    LRY K++IMTD D DG+HI+ LL+ 
Sbjct: 479 ANFKQLTENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLIN 538

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN--QSLSEEIELFCD 577
           F     P L+   FL     P+   T+             E++ ++     +  I+ +  
Sbjct: 539 FIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWKMDTPNHATYHIKYYKG 598

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                SK              +  +D   +      +             ++   S  + 
Sbjct: 599 LGTSTSKE-----------AKEYFQDMERHRILFKYDGQADDDNIVMAFSKKHVDSRKTW 647

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI---FS 694
           L N ++    + ++    ++    +  K         F+     +FS     + I     
Sbjct: 648 LTNHMD----EVKRRKQLNLPERYLYTKGTKHITYSDFINLELVLFSNSDNERSIPSLVD 703

Query: 695 NRIEENYLTILSLICNGDKIKIT 717
                    + +     DK ++ 
Sbjct: 704 GLKPGQRKVMFTCFKRNDKREVK 726


>gi|6729245|dbj|BAA89744.1| DNA gyrase subunit B [Mycobacterium gordonae]
          Length = 421

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 183/422 (43%), Positives = 256/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ IKR+G+ +   +   +    L   G     TG
Sbjct: 3   NSGYTVSGGLHGVGVSVVNALSTRLEVDIKRDGHEWSQYYKRAVP-GTLKQ-GETTRKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPEIFETTQYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + ++ T  Y GG+  FV +++R K P+ QS I  +G      ++
Sbjct: 121 APKSAEEKAAESKAPHKVKQRTFHYPGGLVDFVKHINRTKSPIQQSVIDFEGKGTGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K+   ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKEKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|20387158|dbj|BAB91279.1| gyrase B [Streptomyces griseoverticillatus]
 gi|20387214|dbj|BAB91307.1| gyrase B [Streptomyces sapporonensis]
          Length = 399

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 181/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL------IDKRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL            +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLMDLRADHVDEEGKPLSVEYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV+Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVTYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|45736529|dbj|BAD13343.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736531|dbj|BAD13344.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736533|dbj|BAD13345.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736535|dbj|BAD13346.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736537|dbj|BAD13347.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736539|dbj|BAD13348.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736541|dbj|BAD13349.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736543|dbj|BAD13350.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736545|dbj|BAD13351.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736547|dbj|BAD13352.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736549|dbj|BAD13353.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736551|dbj|BAD13354.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736553|dbj|BAD13355.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736555|dbj|BAD13356.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|133778464|dbj|BAF49238.1| DNA gyrase B subunit [Leptospira borgpetersenii serovar
           Castellonis]
 gi|283132393|dbj|BAI63602.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 391

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 192/393 (48%), Positives = 279/393 (70%), Gaps = 7/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
            F P + IF+  DF +D L  R REL+FLN  + + + D+R              + GGI
Sbjct: 60  RFKPDATIFTTVDFQFDILSARFRELAFLNKGLVLIIEDRRRGAEGENLLRNEFQFSGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL
Sbjct: 120 VSFVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            G R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV
Sbjct: 179 EGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+  
Sbjct: 239 NAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+
Sbjct: 299 GLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS+EI  L++ALGTGIG+D F+INK+RYHKI+
Sbjct: 359 LSSEEIRVLVSALGTGIGEDEFNINKIRYHKIM 391


>gi|198473349|ref|XP_001356262.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
 gi|198139416|gb|EAL33325.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
          Length = 1450

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 133/739 (17%), Positives = 263/739 (35%), Gaps = 65/739 (8%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 13  YQKKSQLEHILLRPDSYIGSVEFTKELMWVYDFEKARMIQREIAFVPGLYKIFDEILVNA 72

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I + ++ +    ++ +NG+GIP  +HKE+ +    +I   L     +N
Sbjct: 73  ADNKQRDKSMNTIKIDIDAEKNVVSIWNNGQGIPVTMHKEQKMYVPTMIFGHLLTSSNYN 132

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLR--IKREGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   +    K+    ++ ++ + +     V        
Sbjct: 133 DDEKKVTGGRNGYGAKLCNIFSTSFTVETATKQYKKNFKQTWGSNMSKASDVTIKDFNGT 192

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
             T +TF P    F ++  + D +    R    + +S +   +     +           
Sbjct: 193 DFTRITFSPDLAKFKMERLDEDIVALMSRRAFDVAASSKGVSVFLNGNKLTVKNFK---- 248

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
              ++    +++      PI+I     N   ++A   +D   + V  F N+I    GG H
Sbjct: 249 --DYIDLHVKNQDDDCGQPIKIVHEVANERWEVACCPSDRGFQQV-SFVNSIATTKGGRH 305

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           +  +   + +Q+   ++K     K   ++     R      ++  + +P F SQTKE + 
Sbjct: 306 VDHVVDNVIKQLIEVLKKKN---KGGINIKPFQVRNHLWIFVNCLIENPTFDSQTKENMT 362

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
                   +  +++   + L +       IV+ VL  +  +     A+   R+   +   
Sbjct: 363 LQAKGFGSKCTLSEKFISSLSKSG-----IVESVLAWAKFKAQNDIAKTGGRKSSKIKGI 417

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVERARF 465
                  +   ++     L L EGDSA   A  G     R    + PLRGK+LNV  A F
Sbjct: 418 PKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNVREANF 477

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLTFFF 522
            ++  + EI  L   +G    +     +    LRY K++IMTD D DG+HI+ LL+ F  
Sbjct: 478 KQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFVH 537

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
              P L+   FL     P+  +T+             E++ ++        +        
Sbjct: 538 TNWPELLRLPFLEEFITPIVKVTKKNEELSFYSLPEFEEWKMDTPNHHTYNVKYYKGLGT 597

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           S          + +  +  +D   +      +  V          ++   S    L N +
Sbjct: 598 S---------TSKEAKEYFQDMERHRILFKYDGQVDDDNIMMAFSRKHIESRKVWLTNHM 648

Query: 643 NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702
           + +  + E            L  +  + +     +    +    +  +R   + ++    
Sbjct: 649 DEVKRRREMGL-----PERYLYTKGTKHISYSDFINLELVLFSNADNERSIPSLVDGLKP 703

Query: 703 TILSLI----CNGDKIKIT 717
               ++       DK ++ 
Sbjct: 704 GQRKVMFTCFKRNDKREVK 722


>gi|195484462|ref|XP_002090705.1| GE12650 [Drosophila yakuba]
 gi|194176806|gb|EDW90417.1| GE12650 [Drosophila yakuba]
          Length = 1441

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 134/744 (18%), Positives = 259/744 (34%), Gaps = 75/744 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 14  YQKKSQLEHILLRPDSYIGSVEFTKELMWVYDKSQNRMVQREISFVPGLYKIFDEILVNA 73

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I + ++ +    +V +NG+GIP  +HKE+ +    +I   L     +N
Sbjct: 74  ADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMHKEQKMYVPTMIFGHLLTSSNYN 133

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRI----KREGNIYEMSFINGILDNPLVVTGSAG 166
               KV+GG +G G  + N  S+   +       R    ++ ++ N +     V      
Sbjct: 134 DDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYR--KSFKQTWGNNMGKASDVQIKDFN 191

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
               T +TF P    F ++  + D    +  R  +++  +  V + L   +         
Sbjct: 192 GTDYTRITFSPDLAKFKMETLDEDIVALMSRRAYDVAASSKGVSVFLNGNKLSVRNFKDY 251

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
                    V   D    P ++    +   R  ++   + R         + F N+I   
Sbjct: 252 IDL-----HVKSSDDDSGPPIKIVHEVANERWEVACCPSDR-----GFQQVSFVNSIATY 301

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG H+  +   L +Q+   ++K     K   ++     R      ++  + +P F SQT
Sbjct: 302 KGGRHVDHVVDNLIKQLLEVLKKKN---KGGINIKPFQVRNHLWVFVNCLIENPTFDSQT 358

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE +   +     +  +++     + +       IV+ VL  +  +     A+   R+  
Sbjct: 359 KENMTLQQKGFGSKCTLSEKFINNMSKSG-----IVESVLAWAKFKAQNDIAKTGGRKSS 413

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNV 460
            +          +   ++     L L EGDSA   A  G     R    + PLRGK+LNV
Sbjct: 414 KIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRNFYGVFPLRGKLLNV 473

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLL 517
             A F ++  + EI  L   +G    +     +    LRY K++IMTD D DG+HI+ LL
Sbjct: 474 REANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLL 533

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           + F     P L+   FL     P+   T+             E++  + +      +   
Sbjct: 534 INFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNIKYY 593

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                S          + +  +  +D   +      + +V          ++   S    
Sbjct: 594 KGLGTS---------TSKEAKEYFQDMERHRILFKYDGSVDDESIVMAFSKKHIESRKVW 644

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L N ++ +  + E            L  +  + +     +    +    +  +R   + +
Sbjct: 645 LTNHMDEVKRRKELGL-----PERYLYAKGTKHITYADFINLELVLFSNADNERSIPSLV 699

Query: 698 EENYLTILSLI----CNGDKIKIT 717
           +        ++       DK ++ 
Sbjct: 700 DGLKPGQRKVMFTCFKRNDKREVK 723


>gi|308153100|dbj|BAJ22139.1| DNA gyrase subunit B [Amycolatopsis methanolica]
          Length = 402

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 185/405 (45%), Positives = 254/405 (62%), Gaps = 16/405 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVGVSVVNALS  L + + R+G  +   + +      L   G A   TG
Sbjct: 1   SESYAVSGGLHGVGVSVVNALSRALDVEVSRDGKKWRQHYDHSKP-GALEEVGPAE-GTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T  TF    DIF    +N +T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TSTTFWADPDIFETTTYNAETVSRRLQEMAFLNKGLSITLRDERVTEAETEADVDGKQAR 118

Query: 222 ----TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y GG+E FV +++  K P+  S I      D + +++AM+WN+ +  +V  F 
Sbjct: 119 VKERVYHYPGGLEDFVKHINGSKDPIHSSIICFDAKGDGLEVEVAMQWNNSFTPSVHTFA 178

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G R+ALTR + +Y       K+   ++ GDD REG T+++SIK+ +P
Sbjct: 179 NTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDENLSGDDVREGLTAIISIKLAEP 238

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL +SE +S V+S  N+ LS W E +P EAK I+ K L ++  R AARRARD
Sbjct: 239 QFEGQTKTKLGNSEAKSFVQSKTNEWLSDWFERNPAEAKTIINKALSSAQARMAARRARD 298

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           L RRKG L+I  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR    QAILP+RGKI
Sbjct: 299 LVRRKGALEIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEGRESRFQAILPIRGKI 358

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +NVE+AR D++L + E+ +LITALGTGI  D FD++KLRYHKI++
Sbjct: 359 INVEKARIDRVLKNNEVQSLITALGTGI-HDDFDLSKLRYHKIVL 402


>gi|308152523|dbj|BAJ22240.1| DNA gyrase subunit B [Mycobacterium gordonae]
 gi|308152525|dbj|BAJ22241.1| DNA gyrase subunit B [Mycobacterium gordonae]
          Length = 421

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 184/422 (43%), Positives = 257/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ IKR+G+ +   +   +    L   G A   TG
Sbjct: 3   NSGYTVSGGLHGVGVSVVNALSTRLEVDIKRDGHEWSQYYERAVP-GTLKQ-GEATRKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPEIFETTQYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + ++ T  Y GG+  FV +++R K P+ QS I  +G      ++
Sbjct: 121 APKSAEEKAAESKAPHKVKQRTFHYPGGLVDFVKHINRTKSPIQQSVIDFEGKGTGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K+   ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKEKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|291618921|ref|YP_003521663.1| ParE [Pantoea ananatis LMG 20103]
 gi|291153951|gb|ADD78535.1| ParE [Pantoea ananatis LMG 20103]
          Length = 539

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 185/549 (33%), Positives = 275/549 (50%), Gaps = 18/549 (3%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS- 164
           GGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R G IY ++F NG     L VTG+ 
Sbjct: 6   GGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRNGEIYSIAFENGEKVQDLTVTGTV 65

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           A  +TGT V F P    F    F+   L H L+  + L   V+I   DK +   +     
Sbjct: 66  AKRNTGTSVHFWPDEHFFDSPRFSVSRLSHLLKAKAVLCPGVEIVFKDKLNNTEQRWCY- 124

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQK 283
            + G+  ++         L + P     + D  ++D A +   +G       + N IP  
Sbjct: 125 -EDGLTDYLCEAVNGLPTLPEKPFVGTFAGDIEAVDWALLWLPEGGELLTESYVNLIPTM 183

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH++GLR  L   +  + E      +    +  +D  +    VLS+KM DP+F+ QT
Sbjct: 184 QGGTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQT 242

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L S +  + V + V D  S WL ++   A+ + +  + ++       RA     RK 
Sbjct: 243 KERLSSRQCAAFVSAVVKDAFSLWLNQNVQAAEQLAELAISSAQ---RRMRAAKKVVRKK 299

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           +    +LPGKLADC+ +D  K+ELFLVEGDSAGGSAKQ R RE QAI+PL+GKILN    
Sbjct: 300 LTSGPALPGKLADCTAQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV 359

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
             D++L+SQE+  +  ++  GI  DS D+++LRY KI I+ DAD DG HI TLL   F +
Sbjct: 360 SSDEVLASQEVHDI--SVAIGIDPDSEDLSQLRYGKICILADADSDGLHIATLLCALFVK 417

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
              +L+ NG +Y+  PPLY I  GK + Y  DE+  E  L      +        KG+  
Sbjct: 418 HFRTLVKNGHVYVAMPPLYRIDLGKEVYYALDEDEKEGVLEQLKRKKGKPNVQRFKGLGE 477

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
            N L+         +  +        +  +    I        D  +    +    N L 
Sbjct: 478 MNPLQLR-------ETTLDPNTRRLVQLTVSDDDIEQTLRV-MDMLLAKKRSEDRRNWLQ 529

Query: 644 FIAEKSEKS 652
              +K++  
Sbjct: 530 EKGDKADIE 538



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 11/84 (13%)

Query: 722 LLDTIFSIG-------RKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDAS 771
            LD     G       +KG  ++QR+KGLGEMN  QL ETTL+P+TR L+++ +   D  
Sbjct: 447 ALDEDEKEGVLEQLKRKKGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTVSDDDIE 506

Query: 772 QADDLFSRLMGDE-VEPRREFIQE 794
           Q   +   L+  +  E RR ++QE
Sbjct: 507 QTLRVMDMLLAKKRSEDRRNWLQE 530


>gi|115500944|dbj|BAF34142.1| B subunit gyrase [Azorhizophilus paspali]
          Length = 386

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 213/389 (54%), Positives = 291/389 (74%), Gaps = 4/389 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            ++KV GGLHGV VSVVNALS  L L I+R+G ++E ++++G+   PL   G   + TGT
Sbjct: 1   DTHKVFGGLHGVRVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQAPLATVGDT-DGTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           +V F PS++ F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG++A
Sbjct: 60  QVHFKPSAETFHNIHFSWDVLAKRLRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLKA 117

Query: 232 FVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV+YL+ +K  + Q     +Q   D + +++ ++WN  ++EN+LCFTNNIPQ+DGGTHL+
Sbjct: 118 FVNYLNTNKNAVSQVFHFNVQREEDGVCVEVRLQWNHRFNENILCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTRQ+ +Y+ +   +K +K +   D  REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRQVNNYLGQEGLTKVNKPTAADDAAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +      +L E+P EA+ +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKCFGDFLLENPNEARAVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLS
Sbjct: 298 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLS 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHK 499
           S E+GTLITALG GIG++ ++I+KLRYH 
Sbjct: 358 SAEVGTLITALGCGIGREEYNISKLRYHN 386


>gi|167391639|ref|XP_001739872.1| DNA topoisomerase [Entamoeba dispar SAW760]
 gi|165896290|gb|EDR23749.1| DNA topoisomerase, putative [Entamoeba dispar SAW760]
          Length = 1351

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 133/599 (22%), Positives = 221/599 (36%), Gaps = 66/599 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT------------------------- 35
           MS   +      D    L   + +  RP  YIG                           
Sbjct: 1   MSKEKEKLE---DIYVKLSHKEQILTRPDTYIGSIERNDEQVWLYEEPTEQYEEGRMVQK 57

Query: 36  --DGESGLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
                 GL  +  E+L NA D          I VT+    S TV +NG+GIP ++HK+E 
Sbjct: 58  VISLAPGLFKIYDEILVNASDNFQRDPKMTTIKVTI-EGNSITVYNNGKGIPIEIHKKEN 116

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           I   E+I   L     +     KV+GG +G G  + N  S+   +       IY+ ++ N
Sbjct: 117 IYIPELIFGHLLTSSNYKDDDKKVTGGRNGYGAKLANIFSTKFSIETCDGKKIYKQTWKN 176

Query: 153 GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQI 208
            + D       S    +  T+VTF P    F ++    D    L  R  +++  N   +I
Sbjct: 177 NMSDKEEPEIESVKKVEEYTKVTFTPDYKRFQMKGMEDDARRLLIRRAYDIAGCNPGKRI 236

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            +  K+                   + +    +P++       G R +I +  +      
Sbjct: 237 WINGKKVCFKNFAEY----------ARMYVGDEPIVSEKA---GERWDICVCAS-----K 278

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
                + F N+I    GGTH+  +   +T+ +    EK     K    +     +     
Sbjct: 279 GEPMQISFVNSINTSHGGTHVDYVTGLMTKYL---AEKMKKLNKKGAEIKPFQIKNHLFV 335

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            ++  + +P F SQTKE L     ++ V  F +    +      L    +V  +L  ++ 
Sbjct: 336 FVNSLIENPAFDSQTKETL-----KTQVNKFGSKPTLSDKFFKELGKLSVVDDILAWAIK 390

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---R 445
           +      +   ++   +              ++     L L EGDSA   A  G S   R
Sbjct: 391 KGEMDLNKSGGKKTARITGIPKLDDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGR 450

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           +   + PLRGK LN       K+  +QE   +   +G   G+    IN+LRY  ++IM D
Sbjct: 451 DYYGVFPLRGKPLNAREIAPSKVKENQEFENIAKIMGLRYGKVYSSINELRYGSVMIMAD 510

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYL 563
            D DG+HI+ LL+ +F    PSL+      +    P+  + RGK            ++ 
Sbjct: 511 QDFDGSHIKGLLINYFHTFWPSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQFNEWK 569


>gi|119226170|dbj|BAF41064.1| DNA gyrase subunit B [Rhodococcus wratislaviensis]
 gi|119226182|dbj|BAF41070.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927087|dbj|BAG82796.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 182/424 (42%), Positives = 254/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFQWNQTYTDSKP-GEL-VKGEATKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVTFWADPNIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVAD 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +     Y GG+E +V +++R K+P+  S +          
Sbjct: 119 APKTAEDESAEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|6729261|dbj|BAA89752.1| DNA gyrase subunit B [Mycobacterium asiaticum]
          Length = 421

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 185/422 (43%), Positives = 256/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ IKR+G+ +   +   +    L   G A   TG
Sbjct: 3   NSGYTVSGGLHGVGVSVVNALSTRLEVDIKRDGHEWSQYYERAVP-GTLKQ-GEATKKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    DIF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPDIFETTQYDFETVARRLQEMAFLNKGLTINLTDERVDQDEVVDEVVSDTAD 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+ QS I  +G      ++
Sbjct: 121 APKSAEEKAAESKAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSVIDFEGKGTGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|20387138|dbj|BAB91269.1| gyrase B [Streptomyces cinnamoneus subsp. lanosus]
 gi|20387140|dbj|BAB91270.1| gyrase B [Streptomyces cinnamoneus subsp. sparsus]
          Length = 399

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 181/401 (45%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLTVDYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I +        +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDVDAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|23451157|gb|AAN32684.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 371

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 282/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++Y  ++  G    PL   G +   TGTEV F P   
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYXXTYHLGEPQAPLKQIGDST-GTGTEVRFWPRPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLR+LSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRQLSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|27530819|dbj|BAC54057.1| DNA gyrase subunit B [Rhodococcus koreensis]
          Length = 421

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 182/424 (42%), Positives = 254/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFRWNQTYTDSKP-GEL-VKGEATKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVTFWADPNIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVAD 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +     Y GG+E +V +++R K+P+  S +          
Sbjct: 119 APKSAEDEHAEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|324962646|gb|ADY62425.1| gyrase subunit B [Frankia sp. CjJ11]
          Length = 360

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 168/359 (46%), Positives = 217/359 (60%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   VSDNGRGIP   H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVSDNGRGIPVGEHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ I+REG  +   + N     PL   G+    TGT VTF     IF   D
Sbjct: 61  VVNALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFETTD 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y+TL  RL+E++FLN  + I+L D+R  EP E+T  Y GG+  FV +L+  K P+ ++
Sbjct: 120 YKYETLSRRLQEMAFLNKGLTINLRDERPEEPLEVTYRYAGGLVDFVEHLNASKDPIHKT 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I +      I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLDSKGTGIEAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDKRSVI-------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K +         GDD REG T+++S+K+  P+F  QTK KL +SE +  V+  
Sbjct: 240 QNLLKPPKSNGKNSDERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGNSEAKRFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  WLE + +EA+ IV K LDA   R AAR ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWLEANRVEARAIVSKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|22762003|dbj|BAC11788.1| gyrase B [Staphylococcus aureus]
 gi|22762005|dbj|BAC11789.1| gyrase B [Staphylococcus aureus]
 gi|22762007|dbj|BAC11790.1| gyrase B [Staphylococcus aureus]
 gi|22762009|dbj|BAC11791.1| gyrase B [Staphylococcus aureus]
 gi|22762011|dbj|BAC11792.1| gyrase B [Staphylococcus aureus]
 gi|22762013|dbj|BAC11793.1| gyrase B [Staphylococcus aureus]
 gi|22762015|dbj|BAC11794.1| gyrase B [Staphylococcus aureus]
 gi|22762017|dbj|BAC11795.1| gyrase B [Staphylococcus aureus]
 gi|22762019|dbj|BAC11796.1| gyrase B [Staphylococcus aureus]
 gi|22762021|dbj|BAC11797.1| gyrase B [Staphylococcus aureus]
 gi|22762023|dbj|BAC11798.1| gyrase B [Staphylococcus aureus]
 gi|22762025|dbj|BAC11799.1| gyrase B [Staphylococcus aureus]
          Length = 392

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 192/394 (48%), Positives = 266/394 (67%), Gaps = 4/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGG 228
           T + F    +IF+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GG
Sbjct: 60  TVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGG 119

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+++V  L+ +K+P+   PI I  S+D+I +++A+++N GY  N+L + NNI   +GGTH
Sbjct: 120 IKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTH 179

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G + ALTR + SY   S   K++K  + G+D REG T+++SIK  DP+F  QTK KL 
Sbjct: 180 EDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLG 239

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEVR VV+   ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+A
Sbjct: 240 NSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVA 299

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKLADCS + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNVE+AR D++
Sbjct: 300 SLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRI 359

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L++ EI  +ITA GTGIG D FD+ K RYHKI+I
Sbjct: 360 LNNNEIRQMITAFGTGIGGD-FDLAKARYHKIVI 392


>gi|4996820|dbj|BAA78455.1| subunit B protein of DNA gyrase [bacterium rA1]
          Length = 319

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 159/323 (49%), Positives = 206/323 (63%), Gaps = 32/323 (9%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEG 92
            +GLHH+ +EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E  
Sbjct: 1   GTGLHHLGFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPK 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  YE+ F  
Sbjct: 60  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFSR 119

Query: 153 GIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLREL 199
           G +             +P+ V G + +  GT+V FLP  +IF     F Y+ L  RLREL
Sbjct: 120 GHVQNRLIEVVDGAEVSPMRVVGES-DKRGTKVHFLPDQEIFKENFDFRYEILAKRLREL 178

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD---- 255
           SFLN+ V+I L D+R  +         GG++ FV +++  KK L  +     GSR     
Sbjct: 179 SFLNNGVRIRLKDERDGKE--DDFSGAGGVKGFVEFINGTKKVLHPTAFHAMGSRPAETY 236

Query: 256 ------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                  I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  
Sbjct: 237 GGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNDL 296

Query: 310 SKKDKRSVIGDDCREGFTSVLSI 332
           +KK K  V GDD REG  +VLS+
Sbjct: 297 AKKAKVEVTGDDMREGLCAVLSV 319


>gi|225547686|gb|ACN93656.1| DNA gyrase subunit B [Nocardia sp. W8027]
 gi|225547688|gb|ACN93657.1| DNA gyrase subunit B [Nocardia sp. W8681]
 gi|225547690|gb|ACN93658.1| DNA gyrase subunit B [Nocardia sp. W9071]
 gi|225547692|gb|ACN93659.1| DNA gyrase subunit B [Nocardia sp. W9241]
          Length = 417

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 179/420 (42%), Positives = 255/420 (60%), Gaps = 31/420 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  I  +G  +  ++ +      L + G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEIDHDGYHWSQTYKDATP-GKL-IQGEATKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTIKLTDERVSDADVTDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHAEEGAAPAEHKVKTRTYNYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIMM 417


>gi|20387130|dbj|BAB91265.1| gyrase B [Streptomyces blastmyceticus]
          Length = 399

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 180/401 (44%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A +++G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQK-NEATDESG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +   +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRVDHVDEEGKALTVEYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|313747314|dbj|BAJ41204.1| DNA gyrase subunit B [Bacillus sp. 2B273-6XC]
          Length = 390

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 186/393 (47%), Positives = 270/393 (68%), Gaps = 4/393 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS   ++ +KR+G+++ + F  G    PL V     ++TG
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSIETEVYVKRDGHVHSIKFERGQTVQPLTVI-GDTDETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T   F   +DIF+    + YD L  R+REL++LN  ++I++ D+R  E R +T  Y+GGI
Sbjct: 60  TTTRFKADADIFTETTVYEYDILATRVRELAYLNRGIRITIADEREEEVRSVTYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+ +K+PL +    + G +D IS+++AM++N G+   ++ F NNI   +GGTH 
Sbjct: 120 RSYVEHLNANKEPLHEPID-VNGEKDGISVEIAMQYNAGFSSTIMSFANNINTYEGGTHE 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG ++ALTR I  Y  K+   K+   ++ G+D REG  +++S+K PDP+F  QTK KL +
Sbjct: 179 SGFKTALTRVINDYARKNGLLKEADANLTGEDVREGLIAIVSVKHPDPQFEGQTKTKLGN 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +  S  ++G   ++ E+P  A+ +V+K L A+  R AA++AR+ TRRK  L+++S
Sbjct: 239 SEVSQITNSLFSEGFERFMLENPTVARQVVEKGLMAARARVAAKKAREFTRRKSALEVSS 298

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADCS  +P +SE+++VEGDSAGGSAK GR R  QAILPLRGKILNVE+AR D++L
Sbjct: 299 LPGKLADCSSTNPAESEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRIL 358

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           S+ EI  +ITA GTGIG++ F++ K RYHKIII
Sbjct: 359 SNAEIRAMITAFGTGIGEE-FNLEKARYHKIII 390


>gi|163256324|dbj|BAF95672.1| DNA gyrase subunit B [Bradyrhizobium sp. KO17]
          Length = 271

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 153/267 (57%), Positives = 191/267 (71%)

Query: 47  EVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           E +D+AIDE+L G+A  + VTLN D S TV D+GRGIP D+HK EG+SAAEVIMT+LHAG
Sbjct: 1   EAVDDAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIHKGEGVSAAEVIMTQLHAG 60

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A 
Sbjct: 61  GKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAP 120

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
              GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y 
Sbjct: 121 GKRGTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYS 180

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGG
Sbjct: 181 GGVEEFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGG 240

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKD 313
           THL+G R ALTRQ+  Y E +   +K 
Sbjct: 241 THLAGFRGALTRQVNGYAEANAKKEKI 267


>gi|2353014|gb|AAB92592.1| gyrase beta subunit [Shewanella woodyi ATCC 51908]
          Length = 419

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 227/428 (53%), Positives = 300/428 (70%), Gaps = 16/428 (3%)

Query: 97  EVIMTRLHAGGKFN------QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EV++  L AGG F         +   S      GVSVVNALSS L+L I+R+G +YE  +
Sbjct: 1   EVLLIALKAGGDFEVISTDADVAAHTS------GVSVVNALSSKLQLTIRRDGKLYEQFY 54

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL 210
             G    P+   G A  +TGTE+ F PSS+ FS   F++D L  R+RELSFLNS V I L
Sbjct: 55  NMGEPVEPIKAIGDAT-NTGTEIRFWPSSETFSDTLFHFDILAKRVRELSFLNSGVGIRL 113

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGY 269
           +D+R  +       Y+GGI AFV YL+ +K P+ +        R++ I++++AM+WNDG+
Sbjct: 114 VDERDNKD--EFFKYEGGISAFVDYLNVNKTPVNKDVFHFIQEREDGITVEVAMQWNDGF 171

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            EN+ CFTNNIPQ+DGGTHL+G R ALTR + SY+E+   +KK K    GDD REG T+V
Sbjct: 172 QENIFCFTNNIPQRDGGTHLAGFRGALTRNLNSYMEREGYNKKGKTGATGDDAREGLTAV 231

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L  +L EHP +A +IV K++DA+  R
Sbjct: 232 ISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNQATLIVGKIIDAARAR 291

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           +AAR+AR++T RKG LD+  LPGKLADC E+DP   E+++VEGD A GSAKQGR+R+NQA
Sbjct: 292 EAARKAREMTCRKGALDLGGLPGKLADCQEKDPALFEIYIVEGDFACGSAKQGRNRKNQA 351

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+  +D ++     ++IMTD DV 
Sbjct: 352 ILPLKGKILNVEKARFDKMLSSQEVVTLITALGCGIGRGLYDPSQTGGQNVVIMTDPDVR 411

Query: 510 GAHIRTLL 517
             HI TLL
Sbjct: 412 SWHINTLL 419


>gi|186920215|gb|ACC95396.1| DNA gyrase B subunit [Gordonia araii]
          Length = 419

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 181/422 (42%), Positives = 247/422 (58%), Gaps = 35/422 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L I R+G ++   +   +    L+  G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVELEIARDGFVWTQDYERAVP--GLLKKGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T   F P  DIF    F+ +T+  RL+E++FLN  + I+L D R  +   I         
Sbjct: 59  TTTRFWPDGDIFETTTFSAETVARRLQEMAFLNKGLTITLTDNRISDDEAIAEADLDGDG 118

Query: 222 -----------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                                  T  Y  G+  ++ +L+R K P+  S I   G  +   
Sbjct: 119 TDKAETVKSEEEKKAQAAVVRTRTYHYPDGLVDYIKHLNRTKTPIHSSVIGFSGKGEGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + 
Sbjct: 179 VEIAMQWNSGYAESVHTFANTINTHEGGTHEEGFRAALTATVNKYAADKKLVKEKDGKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P EAK I
Sbjct: 239 GDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFEANPAEAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           ++K +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 IRKAVDSAQARIAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIKKLRYH 417

Query: 499 KI 500
           KI
Sbjct: 418 KI 419


>gi|86169557|gb|ABC87018.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. dextranicum]
          Length = 393

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 176/394 (44%), Positives = 257/394 (65%), Gaps = 3/394 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDT 169
              YKVSGGLHGVG SVVNALS+ L +++ R+  +Y M F  G +   +         + 
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIER 60

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F P +DIF     +NY TL  R+REL+FLN  ++IS+ DKR  EP + +  ++GG
Sbjct: 61  GTIVHFKPDTDIFRETTTYNYKTLLTRVRELAFLNKGLRISIADKRLEEPIKESFHFEGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ +V YL+  K+ +   P+ ++G  + I ++ A+++     +++  F N I   +GGTH
Sbjct: 121 IKEYVQYLNEDKQVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFANYINTYEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ALTR I  Y  KS   K    S+ G+D REG T+++SIK PDP+F  QTK KL 
Sbjct: 181 ETGFKTALTRVINDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +S+ R   +   ++  S ++ E+P  AK IV+K + A   R AA+RAR++TR++  L+I 
Sbjct: 241 NSDARQATDRMFSETFSRFMMENPNVAKQIVEKGVLAQKARLAAKRAREMTRKQSGLEIG 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPG+LAD +  DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNV +A  +++
Sbjct: 301 NLPGRLADNTSNDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKASLERV 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L+++EI +L TA+GTG G D F++ K  YHK+II
Sbjct: 361 LANEEIRSLFTAMGTGFG-DDFNVEKANYHKVII 393


>gi|46370594|gb|AAS90119.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1402

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 134/736 (18%), Positives = 266/736 (36%), Gaps = 96/736 (13%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT----------------------DGE 38
           MS   ++     +  Q    ++ +  RP  Y+G                        D  
Sbjct: 1   MSKQEKSVE---ERYQKKSQIEHILLRPDSYVGSIENEQKSLWILNKEGTALEEKEIDFV 57

Query: 39  SGLHHMIYEVLDNAIDESLEGY----ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGI 93
              + +  E++ NA D           D I V ++      +V +NG+GIP  +HKE  I
Sbjct: 58  PAFYKIFDEIIVNAADNFQRNQDGAPMDTIKVMIDQQNQMISVWNNGQGIPIQIHKEHNI 117

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFI 151
              E+I   L     ++ K  KV GG +G G  + N  S    +    +     Y+  + 
Sbjct: 118 YIPEMIFGHLLTSSNYDDKEEKVVGGRNGFGAKLTNIFSKKFIVECNDDKRKKYYKQEWR 177

Query: 152 NGIL--DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLREL-SFLNSS 205
             +     PL +T +      T VTF P    F +Q+ + D    L+ R+ ++    N+ 
Sbjct: 178 KNMSERTEPL-ITENKKGGNFTCVTFYPDLSKFKMQNISDDMANLLRKRVYDMAGIFNNK 236

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L +++               +    Y                        ++ + +
Sbjct: 237 VKVYLNNEQIKIKSFSQYVNLFIPDIEEQYKCYDPTMTSD------------RWEILVTF 284

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           +DG  + V  F N I    GG H+  +   +  ++   + K          +     ++ 
Sbjct: 285 SDGQFKQV-SFVNGICTSRGGKHVDFVIDKIVERMQEQILKKN----KDLDIKPHQIKQN 339

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTK+ L +       +  +++     +         I+++++  
Sbjct: 340 LFIFMNCLIVNPSFDSQTKDTLTTKASAFGSKPELSEKFIKKILGTG-----IIEQIVSQ 394

Query: 386 SMVRDAARRARD-LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           +  R  A+ A+     +KG +          D      +   L L EGDSA   A  G  
Sbjct: 395 AKARQNAKLAKTLKGGKKGRITGIPKLDDANDAGTARSENCTLILTEGDSAKALAMAGIE 454

Query: 445 ---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK-LRYHKI 500
              R+N  + PL+GK+LNV  A   +++ +QEI  +   +G      +++  K LRY  +
Sbjct: 455 VVGRDNYGVFPLKGKLLNVREANKKQIIENQEIQNICKIIGLDPAVQNYENTKQLRYGSL 514

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           +IM D D DG+HI+ L++ F     PSL    GFL     P+  +T+G  +      +  
Sbjct: 515 MIMADQDSDGSHIKGLVINFIHHFWPSLFKMKGFLKEFITPILKVTKGDEVHSFFTIQDF 574

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNF-IDDALKIDKLIKDFYPNHDKTFIEQAVI 618
           +++                      + L+ + +     +          +   F +  + 
Sbjct: 575 KNFAAQ-----------------KGDRLKQYKVKYYKGLGTSTDKEAKEYFSNFYKHQIN 617

Query: 619 SGVFNCESDQEINVSLA-SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
               +    + I +  +  K+  R +++A            + +  V    + ++ +  +
Sbjct: 618 FQYLDENDMEAIELGFSGKKIKERKDWLAN----------YDPNSFVDYNIKQLRSKXFI 667

Query: 678 EGSSIFSFGSKYKRIF 693
           +   I    +   R  
Sbjct: 668 DRELIHFSNADNLRSI 683


>gi|45736569|dbj|BAD13363.1| DNA gyrase subunit B [Leptospira sp. A 85]
 gi|133778456|dbj|BAF49234.1| DNA gyrase B subunit [Leptospira sp. serovar Manhao]
          Length = 391

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 191/393 (48%), Positives = 279/393 (70%), Gaps = 7/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
            F P + IF+  DF +D L  R REL+FLN  + + + D+R              + GGI
Sbjct: 60  RFKPDATIFTTVDFQFDILSARFRELAFLNKGLVLIVEDRRRGSEGESLLRNEFQFSGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL
Sbjct: 120 VSFVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            G R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV
Sbjct: 179 EGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+  
Sbjct: 239 NAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+
Sbjct: 299 GLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 LSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|119226142|dbj|BAF41050.1| DNA gyrase subunit B [Arthrobacter globiformis]
          Length = 418

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 182/420 (43%), Positives = 261/420 (62%), Gaps = 30/420 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDT 169
              Y VSGGLHGVG+SVVNALS+ +   ++R+G+++ MSF +G      L V G    +T
Sbjct: 1   GGGYAVSGGLHGVGISVVNALSTRVNTEVRRQGHVWRMSFADGGKPQGAL-VQGEETAET 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------- 215
           GT  TF P   IF   +F+++TL+ R ++++FLN  ++I+L D+R               
Sbjct: 60  GTTQTFYPDPSIFESTEFDFETLRARFQQMAFLNKGLKITLTDERQTAAGTDDAGDLDLD 119

Query: 216 ---------PEPREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLA 262
                     E R +   Y  G+  +V +L+  KK     +  I  +      +I++++A
Sbjct: 120 GVLTEGEVLAEHRTVVYQYNDGLLDYVKHLNSSKKVDVVHEDVIAFETEDTERHIAVEMA 179

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+W   Y E+V  + N I   +GGTH  G R+A+T  I  Y  +    K+   ++ GDD 
Sbjct: 180 MQWTTAYSESVHTYANTINTHEGGTHEEGFRAAMTSLINRYAREKAIIKEKDENLTGDDI 239

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+V+S+K+ +P+F  QTK KL +SEV+  V+  V D L  WLE +P  AK +++K 
Sbjct: 240 REGLTAVISVKLSEPQFEGQTKTKLGNSEVKGFVQRVVTDQLGDWLERNPGPAKDVIRKA 299

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + A+  R AAR+ARD  RRK  L+   +PGKL+DCS +DP K E++LVEGDSAGGSAK+G
Sbjct: 300 ISAAQARMAARKARDNARRKSPLESFGMPGKLSDCSSKDPSKCEVYLVEGDSAGGSAKRG 359

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+ E QAILPLRGKILNVERAR DK L + E+ ++ITA GTGIG+D FD++KLRYHKI++
Sbjct: 360 RNPETQAILPLRGKILNVERARLDKALGNNEVQSMITAFGTGIGED-FDLSKLRYHKIVL 418


>gi|70568834|dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 136/698 (19%), Positives = 252/698 (36%), Gaps = 62/698 (8%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GL 41
           S      +Y     Q    L+ +  RP  YIG  +  +                    GL
Sbjct: 27  SKKTIEQAY-----QKKTQLEHILLRPDTYIGSIERHTQTLWVYENEQMVQKSITYVPGL 81

Query: 42  HHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           + +  E+L NA D        + + VT++++    +V +NG G+P ++H+EEG+   E+I
Sbjct: 82  YKIFDEILVNAADNKQRDPKMNSVKVTIDVESNCISVYNNGDGVPVEIHQEEGVYVPELI 141

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-L 155
              L     ++    K +GG +G G  + N  S+   +    +G     Y+  F N +  
Sbjct: 142 FGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIETA-DGKREKKYKQVFSNNMGT 200

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            +  +++     D  T++TF P    F++     DT+    + +  +       L     
Sbjct: 201 KSEPIISKRQAGDDWTKITFKPDLAKFNMTCLEDDTVALMKKRVIDIAG----CLGKTVK 256

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            E       +K        Y+       +    R +    +    + +  ++G  + V  
Sbjct: 257 VELNGQKFHFKSFSSYCDLYMKSTSVSSLDPLPRFE-EEVHERWQIFVSRSEGQFQQV-S 314

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F N I    GGTH+  + + +T  + + ++     K  K  +     +      ++  + 
Sbjct: 315 FVNGIATIKGGTHVDYVTNKITSHLVNVIKN-KNKKNKKFDLKPHTVKNHLWVFVNALID 373

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P F SQTKE L      S   S+  D  S +L+        I+K + + +  +      
Sbjct: 374 NPAFDSQTKETLTLR-AASFGSSW--DFSSNFLDRVAKSD--IMKNIEEWAEFKQKKDLK 428

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILP 452
           +    +   +   +      +   R+  K  L L EGDSA   A  G S   R++  + P
Sbjct: 429 KTDGSKDRRIYGLAKLSDANEAGGRNSDKCTLILTEGDSAKALAIAGLSVVGRDHYGVFP 488

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGK+LNV  A  ++++ + EI  +   LG   G+    +  LRY  ++IMTD D DG+H
Sbjct: 489 LRGKLLNVREASHNQLMHNLEIQHIKQILGLQHGKQYESVKPLRYGHLMIMTDQDHDGSH 548

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           I+ LL+ F     PSL+      +    P+             D +    +         
Sbjct: 549 IKGLLINFIHSFWPSLLKIPSFLLGFITPIVKARHK-------DGKRKLSFYTMPQYEAW 601

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
            E         +       +     +          +     +        + E D  I 
Sbjct: 602 KEAQGTEAKNWT-------VKYYKGLGTSTDQEAMEYFSDLGKHEKDFVYVDGEDDDAIE 654

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           ++ + K          + E        +S I  +    
Sbjct: 655 LAFSKKKIEARKGWLRQFEPGTFLDDRDSHIKYRDFVH 692


>gi|308152519|dbj|BAJ22238.1| DNA gyrase subunit B [Mycobacterium gordonae]
 gi|308152521|dbj|BAJ22239.1| DNA gyrase subunit B [Mycobacterium gordonae]
 gi|308152527|dbj|BAJ22242.1| DNA gyrase subunit B [Mycobacterium gordonae]
 gi|308152535|dbj|BAJ22246.1| DNA gyrase subunit B [Mycobacterium gordonae]
 gi|308152537|dbj|BAJ22247.1| DNA gyrase subunit B [Mycobacterium gordonae]
          Length = 421

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 185/422 (43%), Positives = 258/422 (61%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ IKR+G+ +   +   +    L   G A   TG
Sbjct: 3   NSGYTVSGGLHGVGVSVVNALSTRLEVDIKRDGHEWSQYYERAVP-GTLKQ-GEATRKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F   S+IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADSEIFETTQYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + ++ T  Y GG+  FV +++R K P+ QS I  +G      ++
Sbjct: 121 APKSAEEKAAESKAPHKVKQRTFHYPGGLVDFVKHINRTKSPIQQSVIDFEGKGTGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K+   ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKEKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|321401424|gb|ADW83174.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 371

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 172/371 (46%), Positives = 238/371 (64%), Gaps = 7/371 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKIL
Sbjct: 301 VQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKIL 360

Query: 459 NVERARFDKML 469
           NVE+A   K+ 
Sbjct: 361 NVEKAMHHKVF 371


>gi|186462244|gb|ACC78599.1| DNA gyrase subunit B [Pseudomonas sp. 8H1]
          Length = 374

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 214/377 (56%), Positives = 284/377 (75%), Gaps = 3/377 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFR 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL
Sbjct: 60  PSDETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSAL
Sbjct: 118 NTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 298 CQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGT 357

Query: 477 LITALGTGIGQDSFDIN 493
           LITALG GIG+D ++I+
Sbjct: 358 LITALGCGIGRDEYNID 374


>gi|133778458|dbj|BAF49235.1| DNA gyrase B subunit [Leptospira weilii serovar Sarmin]
          Length = 391

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 191/393 (48%), Positives = 279/393 (70%), Gaps = 7/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
            F P + IF+  DF +D L  R REL+FLN  + + + D+R              + GGI
Sbjct: 60  RFKPDATIFTTVDFQFDILSARFRELAFLNKGLVLIVEDRRRGSEGENLLRNEFQFSGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL
Sbjct: 120 VSFVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            G R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV
Sbjct: 179 EGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+  
Sbjct: 239 NAEIKGIMQTLSSEGLTLFFEENPSITKKILEKCILSAKAREAARKARDLTRRKTVLEGG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+
Sbjct: 299 GLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 LSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|68445354|dbj|BAE03178.1| DNA gyrase subunit B [actinobacterium Aac-50]
          Length = 399

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 176/401 (43%), Positives = 253/401 (63%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG SVVNALS+ L + +K +G+++   ++ G+   PL   G A ++TG
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYLRGVPTAPLKK-GEAVDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    +IF    +N++TL  R +E++FLN  V I LID+R     E          
Sbjct: 60  TTVTFWADDEIFETTTYNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNARSVHYK 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV +      + +    I          IS ++A++WN+ Y E+V  F N I 
Sbjct: 120 YDGGISDFVKHLNAAKGEMVHPQVIEFGAEDKERKISAEVALQWNNQYSESVYTFANVIQ 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSALT  +  Y ++    K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSALTNVVNRYAKEKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + ++ W + +P EAK I++K + A+  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEARTFVQKITYESMADWFDRNPNEAKDIIRKSIQAATARIAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKL+DC   +P + E+F+VEGDSAG SAKQGR    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLSDCQSTNPVECEIFVVEGDSAGVSAKQGRDPRVQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+ALGTGI  D FD++KLRYHKI++
Sbjct: 360 KARIDKVLQNTEVQGLISALGTGI-HDDFDVSKLRYHKIVL 399


>gi|6729263|dbj|BAA89753.1| DNA gyrase subunit B [Mycobacterium scrofulaceum]
          Length = 421

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 184/422 (43%), Positives = 254/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ IKR+G+ +   +   +    L   G A   TG
Sbjct: 3   NSGYTVSGGLHGVGVSVVNALSTRLEVTIKRDGHEWFQYYDRAVP-GTLKQ-GEATKKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPEIFETTQYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+ QS I   G      ++
Sbjct: 121 APKSAEEKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSVIDFDGKGTGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|172998|gb|AAB36610.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 1429

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 145/743 (19%), Positives = 266/743 (35%), Gaps = 88/743 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 1   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 57

Query: 40  -GLHHMIYEVLDNAIDE------SLEGYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEE 91
            GL  +  E+L NA D       S+      I V ++  + +  V ++G+GIP ++H +E
Sbjct: 58  PGLFKIFDEILVNAADNNKVRDPSM----KRIDVNIHAEEHTIEVKNDGKGIPIEIHNKE 113

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEM 148
            I   E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y  
Sbjct: 114 NIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQ 172

Query: 149 SFINGILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNS 204
            + N +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++    
Sbjct: 173 KWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVR 232

Query: 205 SVQISLIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
            + + L  K             Y   +E      +            I   R N   ++A
Sbjct: 233 DINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVA 292

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
              +D   + +  F N+I    GGTH++ +   + ++           KK K+SV     
Sbjct: 293 FAVSDISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQI 346

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           +      ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++
Sbjct: 347 KNNMFIFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRM 401

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GG 437
            + +   +     +    RK  +              ++  K  L L EGDSA      G
Sbjct: 402 FEIADANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAG 461

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
            A  GR        PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY
Sbjct: 462 LAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRY 519

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDE 556
             ++IMTD D DG+HI+ L++ F       L+   GFL     P+  ++  K  +     
Sbjct: 520 GHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAF 579

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
            ++ DY   +        +           L   +                +        
Sbjct: 580 YNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEV--------------REYFSNLDRHL 625

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
            I           I+++ + K A+       + E            ++    + +     
Sbjct: 626 KIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYE---------PGTVLDPTLKEIPISDF 676

Query: 677 LEGSSIFSFGSKYKRIFSNRIEE 699
           +    I    +   R   N ++ 
Sbjct: 677 INKELILFSLADNIRSIPNVLDG 699


>gi|207678294|gb|ACI25159.1| DNA gyrase B [Ruegeria sp. 270-3]
          Length = 372

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 222/372 (59%), Positives = 284/372 (76%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+D F
Sbjct: 1   VGVSVVNALSDWLELRIWRNGKEHVARFERGDTVKHLTVVGDCGDRTGTEVRFLASTDTF 60

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S  +++++TL+ RLREL+FLNS V+I + D+R  E  E  +FY+GG+  FV YLDR K P
Sbjct: 61  SNLEYSFETLEKRLRELAFLNSGVRIVVSDERPAERLENELFYEGGVNEFVKYLDRSKTP 120

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +M +PI I+G +D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +
Sbjct: 121 VMDAPIYIKGEKDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINN 180

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y + S  +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR V+ES + +
Sbjct: 181 YAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVIESLMGE 240

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ W EE+P  AK +V K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP
Sbjct: 241 KLAEWFEENPQVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSEKDP 300

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALG
Sbjct: 301 SKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALG 360

Query: 483 TGIGQDSFDINK 494
           TGIG+D F+I K
Sbjct: 361 TGIGRDEFNIEK 372


>gi|68445344|dbj|BAE03173.1| DNA gyrase subunit B [actinobacterium Aac-29]
          Length = 399

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 176/401 (43%), Positives = 255/401 (63%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG SVVNALS+ L + +K +G+++   ++ G+   PL   G A ++TG
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYLRGVPTAPLKK-GEAVDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    +IF    +N++TL  R +E++FLN  V I LID+R     E          
Sbjct: 60  TTVTFWADDEIFETTTYNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNARSVHYK 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV +      + +    I          IS ++A++WN+ Y E+V  F N I 
Sbjct: 120 YDGGISDFVKHLNAAKGEMVHPQVIEFGAEDKERKISAEIALQWNNQYSESVYTFANVIQ 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSALT  +  Y ++    K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSALTNVVNRYAKEKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV + V+    + ++ W + +P EA+ I++K++ A+  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEVCTFVQKITYESMADWFDRNPNEARDIIRKLIQAATARIAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKL+DC   +P + E+F+VEGDSAGGSAKQ R    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLSDCQSTNPVECEIFVVEGDSAGGSAKQARDPRVQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DKML + E+  LI+ALGTGI  DSFD+++LRYHKI++
Sbjct: 360 KARIDKMLQNTEVQGLISALGTGI-HDSFDVSRLRYHKIVL 399


>gi|325119604|emb|CBZ55157.1| hypothetical protein NCLIV_055820 [Neospora caninum Liverpool]
          Length = 1641

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 147/741 (19%), Positives = 266/741 (35%), Gaps = 107/741 (14%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG T+  +                      GL+ ++ E+L NA
Sbjct: 41  YQKKSQLEHILLRPDTYIGSTEMHTQSLWVMEEGQECMVYKTINYVPGLYKIVDEILVNA 100

Query: 53  ID-ESLEGYADI-------------ITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
            D ++ EG                 I + +N   G  T+ ++G GIP  +H+E  +   E
Sbjct: 101 ADVKAREGEEKKGKPLKPGARRMSAIKIDINKSAGRITIWNDGEGIPVAIHQEHKVYVPE 160

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI 154
           +I  +L     ++    +V+GG +G G  + N  SS   +    +G     ++M++   +
Sbjct: 161 MIFGQLLTSDNYDDSECRVTGGRNGYGAKLTNIFSSEFTVECA-DGERKKKFKMTWTRNM 219

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLI 211
                    S       +++F+P    F ++ F+ D    L+ R  +L+   + V++ L 
Sbjct: 220 GQKTEPEISSYNGTDYVKISFVPDFAKFGMRGFDDDSLSLLRKRAYDLAGT-AGVRVFLN 278

Query: 212 DKRSPEPREITMF--YKGGIEAFVSY---------------------------------L 236
             R            Y GG ++                                      
Sbjct: 279 GTRIDVSSFSQYVDLYLGGRKSEKPRKEKDEDDAGDDSDDDWDEGPKRKKGAKKRKKDGQ 338

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           D  +         I+        ++ +   DG     + F N+I    GG+H++ +   L
Sbjct: 339 DDEETENGVETKVIKIHEKQWRWEIVISSTDGGQFQQVSFVNSICTTKGGSHVTHVLEPL 398

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
              I   V+K+    K    +     ++     +S  + +P F SQTKE L +   +   
Sbjct: 399 LAAI---VKKANTKNKGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPAKFGS 455

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK----GVLDIASLPG 412
           +  + D     + +       IV+ V+  +  +      + +   K      L       
Sbjct: 456 KCTLADKTIGAVVKS-----SIVENVVLWAQTKQQVELRKQMKVGKTKGRERLSGIPKLE 510

Query: 413 KLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDK 467
              D   R  ++  L L EGDSA      G +  GR R    + PLRGK+LNV  A F +
Sbjct: 511 DANDAGGRHSQECTLILTEGDSAKTSCLAGLSVVGRDR--YGVFPLRGKLLNVRDASFKQ 568

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  ++EI  ++  +G  +   + D   LRY  ++IMTD D DG+HI+ LL+       P 
Sbjct: 569 LTENKEIQNILKIVGLQVNDRTEDARGLRYGSVMIMTDQDHDGSHIKGLLINMMHHYWPQ 628

Query: 528 LIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           L+   GFL     P+  +++    +        E +  + + +     +    G  +  +
Sbjct: 629 LLKCRGFLKAFLTPIVKVSKNNVEKAFYTIPEYEQWKRSCNTTGWRIKYYKGLGTSTDRE 688

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
            + + +D  K       +   HD   I+ A        +   E                 
Sbjct: 689 FKEYFNDLSKHQIDF-VWSGQHDGELIDMAF------NKRRAEDRKRWLQSYQEGTFVDH 741

Query: 647 EKSEKSWHGSINNSDILVKRI 667
             S  S+   +N   IL  R 
Sbjct: 742 NASSLSYADFVNKELILFSRY 762


>gi|295083099|gb|ADF78068.1| DNA gyrase subunit B [Edwardsiella tarda]
          Length = 374

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 223/377 (59%), Positives = 291/377 (77%), Gaps = 4/377 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DF 187
           NALS  L+L I+R+G+++E  + +G+   PL + G     TGT V F PS   FS   +F
Sbjct: 1   NALSEKLELVIRRDGHVHEQIYHHGVPAAPLKMVGDTE-QTGTRVRFWPSMQTFSNVVEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            YD L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV YL+++K P+  + 
Sbjct: 60  QYDILAKRLRELSFLNSGVSIRLRDKRND--REDHFHYEGGIKAFVEYLNKNKTPIHPNV 117

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E  
Sbjct: 118 FYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYMESE 177

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK+K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +
Sbjct: 178 GYTKKNKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLAEY 237

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL
Sbjct: 238 LLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHSEL 297

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           +LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+
Sbjct: 298 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 357

Query: 488 DSFDINKLRYHKIIIMT 504
           D ++ +KLRYH IIIMT
Sbjct: 358 DEYNPDKLRYHSIIIMT 374


>gi|324962650|gb|ADY62427.1| gyrase subunit B [Frankia sp. CmF1]
          Length = 360

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 168/359 (46%), Positives = 217/359 (60%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   VSDNGRGIP   H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVSDNGRGIPVGEHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ I+REG  +   + N     PL   G+    TGT VTF     IF   +
Sbjct: 61  VVNALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y+TL  RL+E++FLN  + ISL D+R  EP E+T  Y GG+  FV +L+  K P+ ++
Sbjct: 120 YKYETLSRRLQEMAFLNKGLTISLRDERPEEPLEVTYRYAGGLVDFVEHLNASKDPIHKT 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I +      I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLDSKGTGIEAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDKRSVI-------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K +         GDD REG T+++S+K+  P+F  QTK KL +SE +  V+  
Sbjct: 240 QNLLKPRKANGKNPDERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGNSEAKRFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  WLE + +EA+ IV K LDA   R AAR ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWLEANRVEARAIVSKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|1174741|sp|P41515|TOP2A_CRIGR RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|191218|gb|AAA37023.1| DNA topoisomerase II [Cricetulus griseus]
          Length = 1526

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 135/685 (19%), Positives = 261/685 (38%), Gaps = 70/685 (10%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N + +  DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQMNKKKNE-DAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 71

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 72  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 131

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    K    +++ 
Sbjct: 132 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASKEYKKMFKQ 191

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 192 TWMDNMGRAGDMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 251

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 252 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNALKVVHEQVNPRWEVCLTM 302

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 303 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKN---KGGVAVKAHQVKNH 358

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTKE +            +++             + I+  V   
Sbjct: 359 MWIFVNALIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFK 417

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAK 440
           + ++      +    +   +          D   R+  +  L L EGDSA      G   
Sbjct: 418 AQIQL---NKKCSAVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGV 474

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRY 497
            GR +    + PLRGKILNV  A   +++ + EI  +I  +G    ++  D +    LRY
Sbjct: 475 VGRDK--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRY 532

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++ K         
Sbjct: 533 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQELAFYSLP 592

Query: 558 SLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
             E++  +     +    +    G  +  + + +  D  +     K   P       + A
Sbjct: 593 EFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDA 646

Query: 617 VISGVFNCESDQEINVSLASKLANR 641
            IS  F+ +   +    L   + +R
Sbjct: 647 AISLAFSKKQVDDRKEWLTHFMEDR 671


>gi|254055411|gb|ACT64305.1| GryB [Pectobacterium carotovorum]
          Length = 364

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 221/366 (60%), Positives = 285/366 (77%), Gaps = 3/366 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  LKL I R+G ++E ++ +G+   PL VTG   N TGT V F PS + 
Sbjct: 1   GVGVSVVNALSEKLKLVIHRDGKLHEQTYKHGVAQAPLAVTGET-NRTGTTVRFWPSHET 59

Query: 182 FSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F+   +F Y+ L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV YL+R+K
Sbjct: 60  FTNVVEFEYEILAKRLRELSFLNSGVSIRLIDER-EKDKADHYHYEGGIKAFVDYLNRNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+  +      ++D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR +
Sbjct: 119 TPIHPNVFYFSMTKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VES V
Sbjct: 179 NNYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLV 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P +AKI+V K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC ER
Sbjct: 239 NEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQER 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 299 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 358

Query: 481 LGTGIG 486
           LG GIG
Sbjct: 359 LGCGIG 364


>gi|242062820|ref|XP_002452699.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
 gi|241932530|gb|EES05675.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
          Length = 1452

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 131/584 (22%), Positives = 234/584 (40%), Gaps = 45/584 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            +  Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 23  EEMYQKKTQLEHILLRPDTYIGSVEKHTQPLWVFEDGAMVNRSVTYVPGLYKIFDEILVN 82

Query: 52  AIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D        D + V +++DG   +V +NG GIP ++H+EE +   E+I   L     +
Sbjct: 83  AADNKQRDPKMDALRVQIDVDGCCISVYNNGDGIPVEIHQEERVYVPEMIFGHLLTSSNY 142

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVTGSAG 166
           N    K +GG +G G  + N  S+   +     R    Y+  F   +   +   +T    
Sbjct: 143 NDNEKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSENMGKKSEPQITKCKQ 202

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            +  T VTF P    F++     D +    + +  +  ++  ++  +   +   I     
Sbjct: 203 GENWTRVTFKPDLAKFNMAHLEEDVVALMRKRVVDMAGTLGKTVKVELDGQRVPI----- 257

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
                +V+   +          +     ++   ++ +  ++G  + V  F N I    GG
Sbjct: 258 KSFSDYVNLYMKSANCDRPDNFKTIYENND-RWEVCVCQSEGQFQQV-SFVNRIATIRGG 315

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH+  +    T QI ++V      K    ++   + +      ++  + +P F SQTKE 
Sbjct: 316 THVDYI----TNQIANHVMTVVNKKNKNANMKLHNVKSHLWVFVNALIDNPAFDSQTKET 371

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L + +      SF +    +      +E   I++ VL  +  + +    +    +K  + 
Sbjct: 372 LTTRQG-----SFGSKFELSIDFLKKVEKSSIIENVLSWADFKLSKELKKTDGSKKSRIS 426

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERA 463
                    +   +D +K  L L EGDSA   A  G +   R+   + PLRGK+LNV  A
Sbjct: 427 GIPKLEDANEAGGKDSEKCTLILTEGDSAKALAMSGIAVVGRDYYGVFPLRGKLLNVREA 486

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
              +++ + EI  +   LG   G+       LRY  ++IMTD D DG+HI+ LL+ F   
Sbjct: 487 NHKQIMENAEIQNIKQILGLQHGKQYASAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHS 546

Query: 524 QMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
             PSL+      +    P+   TRGK+          E++  N 
Sbjct: 547 FWPSLLKVESFLVEFVTPIIKATRGKTTISFYTMPEYEEWRTNL 590


>gi|211927047|dbj|BAG82776.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 430

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 187/433 (43%), Positives = 261/433 (60%), Gaps = 44/433 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++  +KR+G ++   F N +    L     A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTHMETEVKRDGFLWRQDFTNAVP-AELKQVKKA-RGTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T+  F P  +IF    F++DT+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TKQRFWPDPEIFETTVFDFDTVAKRLQEMAFLNKGLTITLTDQRATEEEIEIEAIAEAGD 118

Query: 215 -------------------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
                                      + ++ T FY  G+E +V++L++ K P+  S I 
Sbjct: 119 VAESASLDEVDSQVDAAEEESSAKGKKKEKKKTFFYPNGLEDYVAHLNKSKTPIHPSIIG 178

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                D+  +++AM+WN GY ++V  F N I   +GGTH  G R+ALT  +  Y  +   
Sbjct: 179 FDAKGDDHEVEVAMQWNSGYSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAREHKL 238

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K  + ++ GDDCREG  +V+S+K+ DP+F  QTK KL ++EV+  V+  VN+ ++ W +
Sbjct: 239 LKDKEANLTGDDCREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHVTDWFD 298

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAK IV K + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP +SEL++
Sbjct: 299 ANPAEAKTIVNKAVSSAHARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPVRSELYI 358

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D 
Sbjct: 359 VEGDSAGGSAKAGRDSMYQAILPLRGKILNVEKARLDKVLKNNEVQAIITALGTGI-HDE 417

Query: 490 FDINKLRYHKIII 502
           FDINKLRYHKI++
Sbjct: 418 FDINKLRYHKIVL 430


>gi|308153168|dbj|BAJ22173.1| DNA gyrase subunit B [Mycobacterium triviale]
          Length = 420

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 179/423 (42%), Positives = 251/423 (59%), Gaps = 34/423 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVGVSVVNALS+ L++ I R G+ +   +   +    L   G     TG
Sbjct: 1   SDSYAVSGGLHGVGVSVVNALSTKLEVEISRNGHEWYQVYDYSVP-GTLKQ-GEKTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------------------ 212
           T V F    ++F   +++++T+  RL+E++FLN  + I+L D                  
Sbjct: 59  TTVRFWADPEVFETTEYDFETVSRRLQEMAFLNKGLVINLTDTRVTKAEVVDEVVSEVAD 118

Query: 213 ------------KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + ++    Y GG+  +V +++R K  + +S +   G  D   ++
Sbjct: 119 APKSAEQQAAESAAPQKLKQRKFHYPGGLVDYVKHINRTKTAIHKSVVDFSGKGDGHEVE 178

Query: 261 LAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           +AM+WNDGY+ ++V  F N I   +GGTH  G RSALT  +  Y       K    ++ G
Sbjct: 179 IAMQWNDGYNKDSVHTFANTINTAEGGTHEEGFRSALTSVVNKYARDRKLLKDKDSNLTG 238

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P EAK+I+
Sbjct: 239 DDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQRVCNEQLGHWFESNPAEAKLII 298

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K L ++  R AAR+ARDL RRK   D+  LPGKLADC   DP KSEL++VEGDSAGGSA
Sbjct: 299 NKALSSAQARIAARKARDLVRRKSATDLGGLPGKLADCRSTDPTKSELYVVEGDSAGGSA 358

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           K GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHK
Sbjct: 359 KSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLEKLRYHK 417

Query: 500 III 502
           I++
Sbjct: 418 IVL 420


>gi|163256332|dbj|BAF95676.1| DNA gyrase subunit B [Mesorhizobium loti]
          Length = 269

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 153/265 (57%), Positives = 190/265 (71%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN IDE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGK
Sbjct: 1   VDNEIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGK 60

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A   
Sbjct: 61  FDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGK 120

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I+L D R    +   M Y GG
Sbjct: 121 RGTEVTFLASTETFKNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREEMHYSGG 180

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +E FV YLDR+KK L+ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTH
Sbjct: 181 VEEFVKYLDRNKKALVPTPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTH 240

Query: 289 LSGLRSALTRQITSYVEKSFGSKKD 313
           L+G R ALTRQ+  Y E +   +K 
Sbjct: 241 LAGFRGALTRQVNGYAEANAKKEKI 265


>gi|2909393|emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 134/685 (19%), Positives = 260/685 (37%), Gaps = 70/685 (10%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N + +  DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQMNKKKNE-DAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 71

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 72  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 131

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    K    +++ 
Sbjct: 132 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASKEYKKMFKQ 191

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 192 TWMDNMGRAGDMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 251

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 252 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNALKVVHEQVNPRWEVCLTM 302

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 303 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKN---KGGVAVKAHQVKNH 358

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTKE +            +++             + I+  V   
Sbjct: 359 MWIFVNALIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFK 417

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAK 440
           + ++      +    +   +          D   R+  +  L L EGDSA      G   
Sbjct: 418 AQIQL---NKKCSAVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGV 474

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRY 497
            GR +    + PL GKILNV  A   +++ + EI  +I  +G    ++  D +    LRY
Sbjct: 475 VGRDK--YGVFPLGGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRY 532

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++ K         
Sbjct: 533 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQELAFYSLP 592

Query: 558 SLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
             E++  +     +    +    G  +  + + +  D  +     K   P       + A
Sbjct: 593 EFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDA 646

Query: 617 VISGVFNCESDQEINVSLASKLANR 641
            IS  F+ +   +    L   + +R
Sbjct: 647 AISLAFSKKQVDDRKEWLTHFMEDR 671


>gi|285804192|gb|ADC35604.1| DNA topoisomerase IV subunit B [Geobacillus toebii]
          Length = 395

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 177/400 (44%), Positives = 254/400 (63%), Gaps = 10/400 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGND 168
            Q  YK SGGLHGVG SV NALS WL + I R+G IY+  F + G     L   G   N 
Sbjct: 1   GQGGYKTSGGLHGVGASVANALSEWLVVTIYRDGFIYQQRFEHGGKPVTTLEKIGIT-NK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F P   IFS   FNY+TL  RLRE +FL   ++I LID+R+        +Y+ G
Sbjct: 60  TGTIIQFKPDPTIFSTTTFNYETLSERLRESAFLLKGLKIELIDERTG--MRDVFYYENG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           IEAFV YL+  K  L    +  +G ++ I ++ A ++NDGY ENVL F NN+  KDGGTH
Sbjct: 118 IEAFVEYLNEDKDVLRP-VVYFEGEQNGIEVEFAFQFNDGYSENVLSFVNNVRTKDGGTH 176

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEK 346
            +G ++A+TR    Y  K    K+  +++ G D REG ++++S+++P+   +F  QTK K
Sbjct: 177 EAGAKTAMTRVFNEYARKMGLLKEKDKNLEGSDIREGLSAIISVRIPEHLLQFEGQTKGK 236

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGV 404
           L +SE RS V++ V++ L+ +L+E+P  + +++KK + A   R+AAR+AR+   + +K  
Sbjct: 237 LGTSEARSAVDAVVSEHLTYFLQENPDISTMLIKKAIRAYQAREAARKAREEARSGKKRK 296

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
                L GKL     R+PKK+EL+LVEGDSAGGSAKQGR R  QA+LPLRGK++N E+A+
Sbjct: 297 GKETVLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAK 356

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
              +L ++EI T+I A+G G+G   F ++ + Y K+IIMT
Sbjct: 357 LADILKNEEINTIIHAIGGGVG-PDFSLDDINYDKVIIMT 395


>gi|20387160|dbj|BAB91280.1| gyrase B [Streptomyces hachijoensis]
          Length = 399

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 181/401 (45%), Positives = 261/401 (65%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQQ-NEAIDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLSVEYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV+Y   R  + +  + I ++       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVTYLNSRKGELIHPTVIDVEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|17136538|ref|NP_476760.1| topoisomerase 2 [Drosophila melanogaster]
 gi|135995|sp|P15348|TOP2_DROME RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|8711|emb|CAA43523.1| DNA topoisomerase type II [Drosophila melanogaster]
 gi|22946840|gb|AAF53802.2| topoisomerase 2 [Drosophila melanogaster]
          Length = 1447

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 135/742 (18%), Positives = 261/742 (35%), Gaps = 71/742 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 14  YQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLYKIFDEILVNA 73

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I + ++ +    +V +NG+GIP  +HKE+ +    +I   L     +N
Sbjct: 74  ADNKQRDKSMNTIKIDIDPERNMVSVWNNGQGIPVTMHKEQKMYVPTMIFGHLLTSSNYN 133

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S+   +    RE    ++ ++ N +     V        
Sbjct: 134 DDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTWGNNMGKASDVQIKDFNGT 193

Query: 169 TGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             T +TF P    F +   + D    +  R  +++  +  V + L   +           
Sbjct: 194 DYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVSVFLNGNKLGVRNFKDYID 253

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                  +   D    P ++    +   R  ++   + R         + F N+I    G
Sbjct: 254 L-----HIKNTDDDSGPPIKIVHEVANERWEVACCPSDR-----GFQQVSFVNSIATYKG 303

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G H+  +   L +Q+   ++K     K   ++     R      ++  + +P F SQTKE
Sbjct: 304 GRHVDHVVDNLIKQLLEVLKKKN---KGGINIKPFQVRNHLWVFVNCLIENPTFDSQTKE 360

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
            +   +     +  +++     + +       IV+ VL  +  +     A+   R+   +
Sbjct: 361 NMTLQQKGFGSKCTLSEKFINNMSKSG-----IVESVLAWAKFKAQNDIAKTGGRKSSKI 415

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVER 462
                     +   ++  K  L L EGDSA   A  G     R+   + PLRGK+LNV  
Sbjct: 416 KGIPKLEDANEAGGKNSIKCTLILTEGDSAKSLAVSGLGVIGRDLYGVFPLRGKLLNVRE 475

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLT 519
           A F ++  + EI  L   +G    +     +    LRY K++IMTD D DG+HI+ LL+ 
Sbjct: 476 ANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLIN 535

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           F     P L+   FL     P+   T+             E++  + +      +     
Sbjct: 536 FIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNIKYYKG 595

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
              S          + +  +  +D   +      + +V          ++   S    L 
Sbjct: 596 LGTS---------TSKEAKEYFQDMDRHRILFKYDGSVDDESIVMAFSKKHIESRKVWLT 646

Query: 640 NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
           N ++ +  + E            L  +  + +     +    +    +  +R   + ++ 
Sbjct: 647 NHMDEVKRRKELGL-----PERYLYTKGTKSITYADFINLELVLFSNADNERSIPSLVDG 701

Query: 700 NYLTILSLI----CNGDKIKIT 717
                  ++       DK ++ 
Sbjct: 702 LKPGQRKVMFTCFKRNDKREVK 723


>gi|209863357|gb|ACI88778.1| DNA gyrase subunit B [Aeromonas sp. JH90]
          Length = 366

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 212/368 (57%), Positives = 276/368 (75%), Gaps = 2/368 (0%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF
Sbjct: 1   VGVSVVNALSDKLXLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPIIF 60

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   ++Y+ L  R R+  FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P
Sbjct: 61  TDTLYHYEILAKRPRKPPFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTP 118

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +
Sbjct: 119 IHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNT 178

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + +
Sbjct: 179 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 238

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP
Sbjct: 239 KLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 298

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 299 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 358

Query: 483 TGIGQDSF 490
            GIG+D +
Sbjct: 359 CGIGRDEY 366


>gi|119226160|dbj|BAF41059.1| DNA gyrase subunit B [Rhodococcus rhodnii]
          Length = 415

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 175/418 (41%), Positives = 255/418 (61%), Gaps = 29/418 (6%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L++ +  +G+ +  ++I+      L + G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEVDVDVDGHHWSQTYIDSKP-GEL-IKGEPTTHTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T V F    D+F   ++N++T+  RL+E++FLN  + IS  D+R  E             
Sbjct: 59  TTVRFWADPDVFETTEYNFETVARRLQEMAFLNKGLTISFTDERVLETPAEAEDVSTEVA 118

Query: 222 -----------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
                               Y GG+E +V +++R K+P+ +S +          +++AM+
Sbjct: 119 DAPKTADEPEPVKVKNRVYHYPGGLEDYVQFINRKKQPIHKSVVGFTAKGPGHELEIAMQ 178

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WN GY E+V  F N I   +GGTH  G RSALT  +  Y ++    K     + GDD RE
Sbjct: 179 WNSGYSESVHTFANTINTHEGGTHEEGFRSALTSVVKRYAKEKKLVKDKDPELSGDDIRE 238

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK+IV K + 
Sbjct: 239 GLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKAANEHLAHWFESNPADAKVIVTKAVS 298

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           ++  R+AAR+AR+L RRK   DI  LPGKL+DC  +DP K E+++VEGDSAGGSAK GR 
Sbjct: 299 SAQARNAARKARELVRRKSATDIGGLPGKLSDCRSKDPSKCEIYIVEGDSAGGSAKSGRD 358

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
              QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++
Sbjct: 359 SMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDLAKLRYHKIVL 415


>gi|332258450|ref|XP_003278314.1| PREDICTED: DNA topoisomerase 2-alpha [Nomascus leucogenys]
          Length = 906

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 144/765 (18%), Positives = 281/765 (36%), Gaps = 82/765 (10%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQINKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ +    ++ +NG+GIP   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNIISIWNNGKGIPVVEHKV 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    RE   +++ 
Sbjct: 133 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ 192

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 193 TWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 252

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 253 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTM 303

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 304 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNH 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTKE +            +++             + I+  V   
Sbjct: 360 MWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFK 418

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAK 440
           +         +    +   +          D   R+  +  L L EGDSA      G   
Sbjct: 419 AQ---VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGV 475

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRY 497
            GR +    + PLRGKILNV  A   +++ + EI  +I  +G    ++  D +    LRY
Sbjct: 476 VGRDK--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRY 533

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++ K         
Sbjct: 534 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLP 593

Query: 558 SLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
             E++  +     +    +    G  +  + + +  D  +     K   P       + A
Sbjct: 594 EFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDA 647

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
            IS  F+ +   +    L        NF+ ++ ++   G   +   L  +    +     
Sbjct: 648 AISLAFSKKQTDDRKEWLT-------NFMEDRRQRKLLGLPEDY--LYGQTTTYLTYNDF 698

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKIT 717
           +    I    S  +R   + ++        ++       DK ++ 
Sbjct: 699 INKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 743


>gi|27530807|dbj|BAC54051.1| DNA gyrase subunit B [Nocardia uniformis]
          Length = 418

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 176/421 (41%), Positives = 248/421 (58%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  I R+G  +   + +      L V G      G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLQAEIDRDGYHWSQEYKDSKP-GKL-VQGDTTKRKG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTIRFWADPNIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVSEGDVTDEVVSDTAE 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+E +V +++R K P+  S +   G      +++
Sbjct: 119 APKHADETAAAAATPKVKTRTYHYPGGLEDYVKHINRTKTPIHNSIVAFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P +AK IV K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLGHWFEANPADAKTIVTK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE++R DK+L + E+  +ITA GTGI  D FD+ KLRYHKI+
Sbjct: 359 GRDSMYQAILPLRGKIINVEKSRIDKVLKNNEVQAIITAFGTGI-HDEFDLAKLRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|225547696|gb|ACN93661.1| DNA gyrase subunit B [Nocardia tenerifensis]
          Length = 416

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 178/419 (42%), Positives = 255/419 (60%), Gaps = 33/419 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  + R+G  +  ++ + +    L + G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSQLEAEVYRDGYHWTQTYKDSVP-GKL-IQGDPSKQTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWADPNIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVTEAEVTDEVVSETAD 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + ++ T +Y GG+E FV +++R K+P+  S +   G      ++
Sbjct: 119 APKHAEDEAEAAPAEHKVKQRTYYYPGGLEDFVRHINRTKQPIHNSVVGFTGKGPGHELE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GD
Sbjct: 179 VAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P +AK IV 
Sbjct: 239 DIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQKACNEHLSHWFEANPADAKTIVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
            GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 SGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 416


>gi|20387134|dbj|BAB91267.1| gyrase B [Streptomyces cinnamoneus subsp. albosporus]
          Length = 399

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 181/401 (45%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQQ-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLTVDYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I +        +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDVDAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|308153120|dbj|BAJ22149.1| DNA gyrase subunit B [Lentzea albidocapillata]
          Length = 401

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 179/403 (44%), Positives = 257/403 (63%), Gaps = 15/403 (3%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SY VSGGLHGVG+SVVNALS+ + L I+R+G+++   +      + L   G A ++TGT 
Sbjct: 1   SYAVSGGLHGVGISVVNALSTAVDLEIRRQGHVWTQRYEATKPAHELRQ-GEATDETGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---------- 222
            TF    +IF    +N +T+  RL+E++FLN  + I L D+R  E  E            
Sbjct: 60  TTFWADPEIFETTTYNVETIARRLQEMAFLNKGITIILRDERVSEEDEEADAEGHQAAVK 119

Query: 223 ---MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y GG+E FV +++  +  + Q  I  +   +++ +++AM+WN GY  +V  F N 
Sbjct: 120 ERVYHYPGGLEDFVRHINHTRDAVHQKVIGFEAKGEDLEVEVAMQWNTGYTASVYTFANT 179

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALTR +  Y  +    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 180 INTHEGGTHEEGFRAALTRVVNEYAREKKLLKEKDTNLTGDDIREGLAAIISVKLKEPQF 239

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SE +S V+   N+ L+ W E HP EAK IV K + ++  R AAR+AR+L 
Sbjct: 240 EGQTKTKLGNSEAKSFVQKSTNEHLADWFERHPNEAKTIVSKAVSSAQARMAARKARELV 299

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG LDI  LPGKL DC   +P++ EL++VEGDSAGGSAK+GR    QAILP+RGKI+N
Sbjct: 300 RRKGALDIGGLPGKLKDCRSTNPEECELYVVEGDSAGGSAKEGRDSMYQAILPIRGKIIN 359

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR D++L + E+ ++ITALGT I  D FD++KLRYHKII+
Sbjct: 360 VEKARIDRVLKNNEVQSMITALGTSI-HDEFDLSKLRYHKIIL 401


>gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
           [Pongo abelii]
          Length = 1532

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 144/766 (18%), Positives = 282/766 (36%), Gaps = 83/766 (10%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    RE   +++ 
Sbjct: 133 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ 192

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 193 TWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 252

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 253 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTM 303

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 304 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNH 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTKE +            +++             + I+  V   
Sbjct: 360 MWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFK 418

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAK 440
           +         +    +   +          D   R+  +  L L EGDSA      G   
Sbjct: 419 AQ---VQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGV 475

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL-GTGIGQDSFDINK---LR 496
            GR +    + PLRGKILNV  A   +++ + EI  +I  + G    ++  D +    LR
Sbjct: 476 VGRDK--YGVFPLRGKILNVREASHKQIMENAEINNIIKIIVGLQYKKNYEDEDSLKTLR 533

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556
           Y KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++ K        
Sbjct: 534 YGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSL 593

Query: 557 ESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
              E++  +     +    +    G  +  + + +  D  +     K   P       + 
Sbjct: 594 PEFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DD 647

Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQF 675
           A IS  F+ +   +    L        NF+ ++ ++   G   +   L  +    +    
Sbjct: 648 AAISLAFSKKQIDDRKEWLT-------NFMEDRRQRKLLGLPEDY--LYGQTTTYLTYND 698

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKIT 717
            +    I    S  +R   + ++        ++       DK ++ 
Sbjct: 699 FINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 744


>gi|86169585|gb|ABC87032.1| DNA gyrase subunit B [Weissella kandleri]
          Length = 395

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 187/396 (47%), Positives = 264/396 (66%), Gaps = 5/396 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGND 168
              YKVSGGLHGVG SVVNALS+ L + + R+   YEM F  G     +      SA  +
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTDLDVLVVRDNQGYEMKFERGRTVQTITEVSAESAPVE 60

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GT V F+P +DIF     F+   L  R+REL+FLN  ++IS  DKR       T +Y+G
Sbjct: 61  RGTVVHFVPDADIFQETTVFDAKVLIDRVRELAFLNKGLKISFTDKRVEPEETHTFYYEG 120

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL-CFTNNIPQKDGG 286
           G++ +V YL+R+K  L + P+ ++G+ +NI +++A+++ D Y  NVL  FTNNI   +GG
Sbjct: 121 GLKEYVKYLNRNKTVLFEDPVYVEGTENNIEVEVALQYTDDYRSNVLLSFTNNINTWEGG 180

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH +G ++ALTR I  Y +++   K+    +  DD REG T+++S+K PDP F  QTK K
Sbjct: 181 THETGFKTALTRVINDYAKQNKMLKEGDDGLTIDDLREGLTAIISVKHPDPLFEGQTKAK 240

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L SS+ R+ V    N+    ++ E+P+ AK IV+K   A   R AA+RAR+ +R+K  L+
Sbjct: 241 LGSSDARTAVYRMFNETFKRFIMENPVVAKQIVEKGFSAQKARMAAKRAREDSRKKTGLE 300

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLA+ + +DP+ SELF+VEGDSAGGSAKQGR R  QAILP+RGKILNVE+A+  
Sbjct: 301 IANLPGKLANNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKAQMK 360

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            +L+++EI +L TA+GTG G D FDI+K+ YHK++I
Sbjct: 361 TILANEEIRSLFTAMGTGFG-DEFDISKVNYHKLVI 395


>gi|20387136|dbj|BAB91268.1| gyrase B [Streptomyces cinnamoneus subsp. azacoluta]
          Length = 399

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 180/401 (44%), Positives = 260/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLTVEYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+ GI  FV+Y   R  + +  + I ++       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEVGIVDFVTYLNSRKGELIHPTVIDVEAEDKERMLSVEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|27530813|dbj|BAC54054.1| DNA gyrase subunit B [Rhodococcus fascians]
          Length = 421

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 179/424 (42%), Positives = 254/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L+I R+G+ Y+ ++       PL   G    +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELQIARDGHRYKQTYDYAKP-GPLETVGDTT-ETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F     IF   D++++T+  RL+E++FLN  + I+  D+R                
Sbjct: 59  TTVRFWADGKIFETLDYSFETVHRRLQEMAFLNKGLTINFTDERVAATDATEEELGETAE 118

Query: 215 ----------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + R+ T  Y  G+  FV +++R K  +  S +   G  +   
Sbjct: 119 APKTAEEEQADAANAKPAKVRKRTYHYPDGLVDFVKHINRTKTAIHNSVVGFTGKGEGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + 
Sbjct: 179 VEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRTALTSTVNKYAIEKKLVKEKDVKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+++ +P+F  QTK KL ++E+RS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAVISVRVGEPQFEGQTKTKLGNTEIRSFVQKACNEHLSHWFESNPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           + K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 INKAVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMFQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|259018126|gb|ACV89655.1| DNA gyrase subunit B [Nocardia pneumoniae]
          Length = 414

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 177/417 (42%), Positives = 252/417 (60%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  I R+G  +  ++ +      L V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEIDRDGYHWSQTYKDATP-GKL-VQGEPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    ++F    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPEVFETTTYNFETVARRLQEMAFLNKGLTIKLTDERVSDSEVIDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHADQNGAAAEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPHKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILP+RGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPIRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 414


>gi|308153078|dbj|BAJ22128.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 181/424 (42%), Positives = 254/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFQWNQTYTDSKP-GEL-VKGEATKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVTFWADPNIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVAD 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +     Y GG+E +V +++R K+P+  S +          
Sbjct: 119 APKTAEDESAEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           K+++
Sbjct: 418 KLVL 421


>gi|66474603|gb|AAY46871.1| GyrB [Aeromonas sp. ym1]
          Length = 371

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 220/374 (58%), Positives = 281/374 (75%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVV+ALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVHALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPA 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y  L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYYILAKRLRELSFLNSGVSIRLRDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG G G+D ++ +K
Sbjct: 358 LGCGSGRDEYNPDK 371


>gi|20387116|dbj|BAB91258.1| gyrase B [Streptomyces alboverticillatus]
 gi|20387216|dbj|BAB91308.1| gyrase B [Streptomyces septatus]
          Length = 399

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 181/401 (45%), Positives = 257/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +   +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRVDHVDEEGKALTVEYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I        +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIDAEDKERMLSLEVAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARVDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|83758694|dbj|BAE54518.1| DNA gyrase subunit B [Rhodococcus sp. TCH4]
          Length = 421

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 180/424 (42%), Positives = 252/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFRWTQTYTDSKP-GEL-VKGDATKEMG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T V F    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPNIFETTTYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVAD 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +     Y GG+E +V +++R K+P+  S +          
Sbjct: 119 APKTAEDESAAADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|73966009|ref|XP_537646.2| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 1
           [Canis familiaris]
          Length = 1532

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 135/664 (20%), Positives = 260/664 (39%), Gaps = 62/664 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 34  YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIGMNYREVTFVPGLYKIFDEILVNAA 93

Query: 54  DESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ + +  ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 94  DNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD 153

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++++ +     +       + 
Sbjct: 154 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELRPFNGED 213

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++     V++ L   +            
Sbjct: 214 YTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNK---------LPV 264

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     +P++I   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 265 KGFRSYVDMYLKDKVDETGNPLKIIHEQVNPRWEVCLTMSEKGFQQI-SFVNSIATSKGG 323

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE 
Sbjct: 324 RHVDYIADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKEN 380

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + +V+S   +                 + I+  V   + ++      +    +   + 
Sbjct: 381 M-TLQVKSFGSTCQLSEKFIKAATGCGIVESILNWVKFKAQIQL---NKKCSAVKHNRIK 436

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   R+  +  L L EGDSA      G    GR +    + PLRGKILNV 
Sbjct: 437 GIPKLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVR 494

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   +++ + EI  +I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+
Sbjct: 495 EASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLI 554

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCD 577
            F     PSL+ + FL     P+  +++ K           E++  +     +    +  
Sbjct: 555 NFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
             G  +  + + +  +  +     K   P       + A IS  F+ +   +    L   
Sbjct: 615 GLGTSTSKEAKEYFANMKRHRIQFKYSGPE------DDAAISLAFSKKQIDDRKEWLTHF 668

Query: 638 LANR 641
           + +R
Sbjct: 669 MEDR 672


>gi|324962652|gb|ADY62428.1| gyrase subunit B [Frankia sp. CmF6]
          Length = 360

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 168/359 (46%), Positives = 216/359 (60%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   VSDNGRGIP   H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVSDNGRGIPVGEHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ I+REG  +   + N     PL   G+    TGT VTF     IF   D
Sbjct: 61  VVNALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFETTD 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y+TL  RL+E++FLN  + ISL D+R  EP E+T  Y GG+  FV +L+  K P+ ++
Sbjct: 120 YKYETLSRRLQEMAFLNKGLTISLRDERPEEPLEVTYRYAGGLVDFVEHLNASKDPIHKT 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I +      I  +LAM+WN  Y+E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLDSKGTGIEAELAMQWNARYNESVYTFANTINTHEGGTHEEGFRAALTSALNAYAKD 239

Query: 307 SFGSKKDKRSVI-------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K +         GDD REG T+++S+K+  P+F  QTK KL +SE +  V+  
Sbjct: 240 QNLLKPPKANGKNADERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGNSEAKRFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  WLE + +EA+ IV K LDA   R AAR ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWLEANRVEARAIVSKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|27901575|dbj|BAC55908.1| DNA gyrase subunit B [Rhodococcus pyridinivorans]
 gi|308152457|dbj|BAJ22207.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 421

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 180/424 (42%), Positives = 255/424 (60%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ L++ I  +G  +E ++        L V G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTTLEVEIDNDGYHWEQTYTASKP-GEL-VRGEATKQTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T V F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWPDPEIFETTTFNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTDEDVPETAE 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +  T  Y GG+E +V +++R K P+  S +          
Sbjct: 119 APKTAEDQAVEATEPEVHKVKVRTYHYPGGLEDYVRHINRTKSPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ 
Sbjct: 179 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKDKDPNLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ +S W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP K E+++VEGDSAGGS
Sbjct: 299 VTKAVSSAHARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI ++ FDI+KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHEE-FDISKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|259018130|gb|ACV89657.1| DNA gyrase subunit B [Nocardia otitidiscaviarum]
          Length = 414

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 177/417 (42%), Positives = 253/417 (60%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ + + I R+G  +   + +      L + G     TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMHVEIDRDGYHWSQEYKDSKP-GKL-IKGDPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T  TF    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTQTFWADPNIFETTVYNFETVARRLQEMAFLNKGLTITLTDERVSEGEITDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                        P+ +  T  Y GG+E +V +++R K P+  S +   G      +++A
Sbjct: 119 APKHLDENTPPAEPKVKTRTYHYPGGLEDYVKHINRTKTPIHNSIVSFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVADPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE++R DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKSRIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 414


>gi|308153080|dbj|BAJ22129.1| DNA gyrase subunit B [Rhodococcus fascians]
          Length = 421

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 179/424 (42%), Positives = 254/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L+I R+G+ Y+ ++       PL   G    +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELQIARDGHRYKQTYDYAKP-GPLETVGDTT-ETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F     IF   D++++T+  RL+E++FLN  + I+  D+R                
Sbjct: 59  TTVRFWADGKIFETLDYSFETVHRRLQEMAFLNKGLTINFTDERVAATDATEEELGETAE 118

Query: 215 ----------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + R+ T  Y  G+  FV +++R K  +  S +   G  +   
Sbjct: 119 APKTAEEEQADAAAAKPTKVRKRTYHYPDGLVDFVKHINRTKTAIHNSVVGFTGKGEGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + 
Sbjct: 179 VEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRTALTSTVNKYAIEKKLVKEKDVKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+++ +P+F  QTK KL ++E+RS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAVISVRVGEPQFEGQTKTKLGNTEIRSFVQKACNEHLSHWFESNPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           + K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 INKAVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMFQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|51571575|emb|CAH18954.1| gyrase B [Corallococcus coralloides]
          Length = 370

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 197/373 (52%), Positives = 266/373 (71%), Gaps = 3/373 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +YKVSGGLHGVGV+ VN LS W K+R++R G +YE S+  G+ +      G+     GT 
Sbjct: 1   AYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVANGSPQEVGTTDKL-GTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P + +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +F
Sbjct: 60  IHFKPDTQVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISSF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG 
Sbjct: 118 VEYLNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV
Sbjct: 178 KAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           + +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPG
Sbjct: 238 KGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARLAARKARETVRRKGVLDGGGLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S 
Sbjct: 298 KLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSA 357

Query: 473 EIGTLITALGTGI 485
           EI TLITALGTGI
Sbjct: 358 EIVTLITALGTGI 370


>gi|45736559|dbj|BAD13358.1| DNA gyrase subunit B [Leptospira santarosai]
 gi|133778462|dbj|BAF49237.1| DNA gyrase B subunit [Leptospira santarosai serovar Shermani]
          Length = 391

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 189/393 (48%), Positives = 277/393 (70%), Gaps = 7/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGESS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL----IDKRSPEPREITMFYKGGI 229
            F P + IF+  DF +D L  R REL+FLN  + + +      +           + GGI
Sbjct: 60  RFKPDASIFTTVDFQFDILSARFRELAFLNKGLVLIVEDRRRSREGENLLRNEFQFSGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL
Sbjct: 120 VSFVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            G R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV
Sbjct: 179 EGFRAALTRTLNDFLKKDTALSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+  
Sbjct: 239 NAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+
Sbjct: 299 GLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNIQAILPLKGKILNVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 LSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|308152573|dbj|BAJ22265.1| DNA gyrase subunit B [Mycobacterium sp.]
          Length = 421

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 184/422 (43%), Positives = 255/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ IKR+G  +   +   +    L   G A   TG
Sbjct: 3   NSGYNVSGGLHGVGVSVVNALSTRLEVDIKRDGYEWSQHYDRAVP-GTLKQ-GEATRKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    DIF   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQEEVVDEVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV ++ R K P+ QS I  +G  +   ++
Sbjct: 121 APKSAEEKKAESAGPQKVKHRTFHYPGGLIDFVKHISRTKSPIQQSVIAFEGKGEGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLTKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|182407069|gb|ACB87634.1| DNA gyrase B subunit [Shewanella sp. MB4]
          Length = 382

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 217/378 (57%), Positives = 287/378 (75%), Gaps = 4/378 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG +YE  +  G  D P+   G A  +TGTE+ F P
Sbjct: 6   GGLHGVGVSVVNALSEKLQLTIRREGKLYEQFYTMGEPDEPIKEIGDAT-NTGTEIRFWP 64

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS  FS  +F++D L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+
Sbjct: 65  SSQTFSDVEFHFDILAKRVRELSFLNSGVGIRLVDERDNKD--EFFKYEGGISAFVDYLN 122

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSAL
Sbjct: 123 INKTPVNKEIFHFVQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSAL 182

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+++   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 183 TRNLNTYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAV 242

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +  + + L  +L E+P E K+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLAD
Sbjct: 243 KQTMGEKLGDYLLENPNETKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLAD 302

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP   E+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 303 CQEKDPALFEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 362

Query: 477 LITALGTGIGQDSFDINK 494
           LITALG GIG+D +D  +
Sbjct: 363 LITALGCGIGRDEYDPER 380


>gi|27530821|dbj|BAC54058.1| DNA gyrase subunit B [Nocardia brevicatena]
          Length = 418

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 181/421 (42%), Positives = 254/421 (60%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  IK +G  +  ++ +      L V G    +TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLEAEIKHDGYHWSQTYKDAAP-GKL-VQGEPTRETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F P  ++F    FN++T+  RL+E++FLN  + I L D+R  E             
Sbjct: 59  TTIRFWPDPEVFETTTFNFETVARRLQEMAFLNKGLTIVLTDERVSEAEITDDVVSETAE 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+E FV +++R K P+  S +   G      +++
Sbjct: 119 VPKHAENGEQQPAEPKVKTRTYHYPGGLEEFVRHINRTKTPIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI KLRYHKI+
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGI-HDEFDIGKLRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|324962644|gb|ADY62424.1| gyrase subunit B [Frankia sp. CmM1]
          Length = 360

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 168/359 (46%), Positives = 217/359 (60%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T+  DG   VSDNGRGIP   H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   TMLADGGVRVSDNGRGIPVGEHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ I+REG  +   + N     PL   G+    TGT VTF     IF   D
Sbjct: 61  VVNALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFETTD 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y+TL  RL+E++FLN  + ISL D+R  EP E+T  Y GG+  FV +L+  K P+ ++
Sbjct: 120 YKYETLSRRLQEMAFLNKGLTISLRDERPEEPLEVTYRYAGGLVDFVEHLNASKDPIHKT 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I +      I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLDSKGTGIEAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDKRSVI-------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K +         GDD REG T+++S+K+  P+F  QTK KL +SE +  V+  
Sbjct: 240 QNLLKPPKSNGKNPDERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGNSEAKRFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  WLE + +EA+ IV K LDA   R AAR ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWLEANRVEARAIVSKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|324962648|gb|ADY62426.1| gyrase subunit B [Frankia sp. CjJ14]
          Length = 360

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 167/359 (46%), Positives = 216/359 (60%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   VSDNGRGIP   H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVSDNGRGIPVGEHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ I+REG  +   + N     PL   G+    TGT VTF     IF   D
Sbjct: 61  VVNALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFETTD 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y+TL  RL+E++FLN  + I+L D+R  EP E+T  Y GG+  FV +L+  K P+ ++
Sbjct: 120 YKYETLSRRLQEMAFLNKGLTINLRDERPEEPLEVTYRYAGGLVDFVEHLNASKDPIHKT 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I +      I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLDSKGTGIEAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDKRSVIG-------DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K +          DD REG T+++S+K+  P+F  QTK KL +SE +  V+  
Sbjct: 240 QNLLKPPKSNGKNSDERLAADDIREGLTAIISVKLAQPQFEGQTKTKLGNSEAKRFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  WLE + +EA+ IV K LDA   R AAR ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWLEANRVEARAIVSKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|308152443|dbj|BAJ22200.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 421

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 180/424 (42%), Positives = 255/424 (60%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ L++ I  +G  +E ++        L V G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTTLEVEIDNDGYHWEQTYTASKP-GEL-VRGEATKQTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWPDPEIFETTTFNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTDEDVPETAE 118

Query: 215 ----------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +  T  Y GG+E +V +++R K P+  S +          
Sbjct: 119 APKTAEDQAVEATEPEMHKVKVRTYHYPGGLEDYVRHINRTKSPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ 
Sbjct: 179 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKDKDPNLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ +S W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP K E+++VEGDSAGGS
Sbjct: 299 VTKAVSSAHARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI ++ FDI+KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHEE-FDISKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|10281028|dbj|BAB13755.1| type II DNA topoisomerase [Clavispora lusitaniae]
          Length = 772

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 144/666 (21%), Positives = 253/666 (37%), Gaps = 40/666 (6%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEE 91
                 GL+ +  E+L NA D  +       + V ++++  + TV ++GRGIP ++H++E
Sbjct: 8   SVKIVPGLYKIFDEILVNAADNKIRDPSMKQLKVNIDVESNTITVRNDGRGIPVEIHEKE 67

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMS 149
            +   E+I   L     ++    KV+GG +G G  + N  S+   +       G +Y+  
Sbjct: 68  QMYIPEMIFGNLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTVETADLSNGKVYQQV 127

Query: 150 FINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           + N +   NP  +         T++TF P    F ++  + D    ++ R+ +L      
Sbjct: 128 WTNNMSKCNPPKIKKMTAKREYTQITFKPDLAKFGMERLDDDIVSVMKRRVFDLCGTVRD 187

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
             + L D + P            ++ +V  L +           +         ++A   
Sbjct: 188 CSVFLNDTKLPIKSFKQY-----VDMYVQALRQLDDSDDPKSSVVVHENFGDRWEVAFAV 242

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           +DG  + V  F N+I    GGTH+  L  ++ +Q+T  +  +   KK    V   + +  
Sbjct: 243 SDGSFQQV-SFVNSIATTSGGTHVKMLTDSIVKQLTESIS-AKRGKKKALMVKPQEVKNN 300

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F+SQTKE++ +   +          ++    +  +    I  K+   
Sbjct: 301 MFLFVNCLVENPAFTSQTKEQMTTKPAKF----GSKPVITEDFIKKLIAKTSITDKLHSL 356

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           S   +    AR    R+  +  A           +D  K  L L EGDSA   A  G   
Sbjct: 357 SQANEDKALARQDGSRRSRVKSA-KLHDANKAGTKDGHKCTLILTEGDSALAQAVVGLKV 415

Query: 446 ---ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKI 500
              E     PLRGK+LNV  A  D++  + EI  +   +G    +      +  LRY  I
Sbjct: 416 VGNEYYGCFPLRGKMLNVRDASADQISKNAEINEIKKIIGLQHKKHYTPESLKSLRYGHI 475

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHN-GFLYIIKPPLYGIT---RGKSLQYVKDE 556
           +IMTD D DG+HI+ LL+ FF    P L+   GFL     P+  +T   R K +    + 
Sbjct: 476 LIMTDQDHDGSHIKGLLINFFESSFPGLLQCPGFLQGFITPIVKVTILGRHKKVIPFYNM 535

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
              E +  ++            KG+     L   I +        +    +  +    Q 
Sbjct: 536 PDFERWRESEEAQANRWTHKYYKGL--GTSLATEITEY------FQQLSRHLKRFHALQD 587

Query: 617 VISGVFNCESDQEINVSLASKLANRL---NFIAEKSEKSWHGSINNSDILVKRIARGVQE 673
                 +   +++        L   +       E  E      IN   IL          
Sbjct: 588 DDKQYIDLAFNKKKADDRKDWLGAYIPGTQLDPEIEEIPIADFINKELILFSMADNIRSL 647

Query: 674 QFVLEG 679
             VL+G
Sbjct: 648 PCVLDG 653


>gi|209863337|gb|ACI88768.1| DNA gyrase subunit B [Aeromonas sp. JH63]
          Length = 365

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 216/368 (58%), Positives = 278/368 (75%), Gaps = 3/368 (0%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   ++Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P
Sbjct: 60  TDTLYHYEILAKRLRELSFLNSGVSIRLKDER--DGREAHFCYEGGIKAFVEYLNQNKTP 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +
Sbjct: 118 IHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + +
Sbjct: 178 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 237

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP
Sbjct: 238 KLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 297

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 357

Query: 483 TGIGQDSF 490
            GIG+D +
Sbjct: 358 CGIGRDEY 365


>gi|118398165|ref|XP_001031412.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
           thermophila]
 gi|89285740|gb|EAR83749.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
           thermophila SB210]
          Length = 1416

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 134/736 (18%), Positives = 266/736 (36%), Gaps = 96/736 (13%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT----------------------DGE 38
           MS   ++     +  Q    ++ +  RP  Y+G                        D  
Sbjct: 1   MSKQEKSVE---ERYQKKSQIEHILLRPDSYVGSIENEQKSLWILNKEGTALEEKEIDFV 57

Query: 39  SGLHHMIYEVLDNAIDESLEGY----ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGI 93
              + +  E++ NA D           D I V ++      +V +NG+GIP  +HKE  I
Sbjct: 58  PAFYKIFDEIIVNAADNFQRNQDGAPMDTIKVMIDQQNQMISVWNNGQGIPIQIHKEHNI 117

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFI 151
              E+I   L     ++ K  KV GG +G G  + N  S    +    +     Y+  + 
Sbjct: 118 YIPEMIFGHLLTSSNYDDKEEKVVGGRNGFGAKLTNIFSKKFIVECNDDKRKKYYKQEWR 177

Query: 152 NGIL--DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLREL-SFLNSS 205
             +     PL +T +      T VTF P    F +Q+ + D    L+ R+ ++    N+ 
Sbjct: 178 KNMSERTEPL-ITENKKGGNFTCVTFYPDLSKFKMQNISDDMANLLRKRVYDMAGIFNNK 236

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L +++               +    Y                        ++ + +
Sbjct: 237 VKVYLNNEQIKIKSFSQYVNLFIPDIEEQYKCYDPTMTSD------------RWEILVTF 284

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           +DG  + V  F N I    GG H+  +   +  ++   + K          +     ++ 
Sbjct: 285 SDGQFKQV-SFVNGICTSRGGKHVDFVIDKIVERMQEQILKKN----KDLDIKPHQIKQN 339

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTK+ L +       +  +++     +         I+++++  
Sbjct: 340 LFIFMNCLIVNPSFDSQTKDTLTTKASAFGSKPELSEKFIKKILGTG-----IIEQIVSQ 394

Query: 386 SMVRDAARRARD-LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           +  R  A+ A+     +KG +          D      +   L L EGDSA   A  G  
Sbjct: 395 AKARQNAKLAKTLKGGKKGRITGIPKLDDANDAGTARSENCTLILTEGDSAKALAMAGIE 454

Query: 445 ---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK-LRYHKI 500
              R+N  + PL+GK+LNV  A   +++ +QEI  +   +G      +++  K LRY  +
Sbjct: 455 VVGRDNYGVFPLKGKLLNVREANKKQIIENQEIQNICKIIGLDPAVQNYENTKQLRYGSL 514

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           +IM D D DG+HI+ L++ F     PSL    GFL     P+  +T+G  +      +  
Sbjct: 515 MIMADQDSDGSHIKGLVINFIHHFWPSLFKMKGFLKEFITPILKVTKGDEVHSFFTIQDF 574

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNF-IDDALKIDKLIKDFYPNHDKTFIEQAVI 618
           +++                      + L+ + +     +          +   F +  + 
Sbjct: 575 KNFAAQ-----------------KGDRLKQYKVKYYKGLGTSTDKEAKEYFSNFYKHQIN 617

Query: 619 SGVFNCESDQEINVSLA-SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
               +    + I +  +  K+  R +++A            + +  V    + ++ +  +
Sbjct: 618 FQYLDENDMEAIELGFSGKKIKERKDWLAN----------YDPNSFVDYNIKQLRYKDFI 667

Query: 678 EGSSIFSFGSKYKRIF 693
           +   I    +   R  
Sbjct: 668 DRELIHFSNADNLRSI 683


>gi|68445336|dbj|BAE03169.1| DNA gyrase subunit B [actinobacterium Aac-100]
 gi|68445350|dbj|BAE03176.1| DNA gyrase subunit B [actinobacterium Aac-35]
          Length = 399

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 182/401 (45%), Positives = 253/401 (63%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG SVVNALS+ L + +K EG ++  +++ G+   PL   G A ++TG
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSTRLTVAVKTEGFLWTQAYLRGVPTAPLHK-GEAVSETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    +IF    +N++TL  R +E++FLN  V I L+D+R     +          
Sbjct: 60  TTVTFWADDEIFETTVYNFETLSRRFQEMAFLNRGVSIELVDERPEYKDDEGNPRSVHYK 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV +      + +    I          IS ++A++WN+ Y E+V  F N I 
Sbjct: 120 YDGGISDFVKHLNAAKGELVHPQVIEFGAEDKERKISAEVALQWNNQYSESVYTFANVIQ 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSALT  +  Y +     K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + ++ W + +P EAK IV+K + AS  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEARTFVQKITYESMADWFDRNPNEAKDIVRKAIQASFARLAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  SLPGKLADC   +PK+ E+F+VEGDSAGGSAKQGR    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMSLPGKLADCQSTNPKECEIFVVEGDSAGGSAKQGRDPRTQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+ALGTGI  D FDI KLRYHKI++
Sbjct: 360 KARIDKVLQNTEVQGLISALGTGI-HDDFDIGKLRYHKIVL 399


>gi|187471789|gb|ACD11205.1| DNA gyrase B subunit [Nocardia sp. W7467]
 gi|187471791|gb|ACD11206.1| DNA gyrase B subunit [Nocardia sp. W7811]
          Length = 416

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 176/419 (42%), Positives = 253/419 (60%), Gaps = 31/419 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETAE 118

Query: 214 -----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                        P+ +  T  Y GG+E FV +++R K+P+  + +          +++A
Sbjct: 119 APKHDEGTAAAPEPKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVAFTSKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI+
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIV 416


>gi|211927075|dbj|BAG82790.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 418

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 177/421 (42%), Positives = 254/421 (60%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALSS L+  ++++G+ +  ++   +    L   G   + TGT
Sbjct: 1   GAYQVSGGLHGVGVSVVNALSSRLEADVRKDGHEWFQTYDRSVP-GTLRK-GDPTDKTGT 58

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    +IF   +++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 59  TIRFWADPEIFETTNYDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEA 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K  +  S I   G  +   +++
Sbjct: 119 PKSAEEKAAEASAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGEGHEVEI 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK ++ K
Sbjct: 239 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKTVINK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 359 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|23451172|gb|AAN32691.1| DNA gyrase subunit B [Aeromonas eucrenophila]
          Length = 372

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 219/374 (58%), Positives = 282/374 (75%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE     G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEXXXHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AF  YL+++K
Sbjct: 61  IFSDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFXEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q        +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R++LTR +
Sbjct: 119 TPIHQKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTSLTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+ K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMNKEDYSKKAKSAANGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLAEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|19912115|dbj|BAB88369.1| DNA gyrase subunit B [Cytophaga sp. T-561]
          Length = 390

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 182/391 (46%), Positives = 259/391 (66%), Gaps = 9/391 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALSS +K+ + R G I+E  ++ G+    +   G   +  GT V F
Sbjct: 1   VSGGLHGVGVSCVNALSSSMKVTVHRGGKIHEQEYVRGVPQYEVREIGET-DRRGTHVHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEA 231
            P  +IF + ++ Y+T+ +RLRE++FLN+ ++ISL D R  +     R    + +GG+  
Sbjct: 60  KPDHEIFQILEYKYETIANRLREMAFLNAGIKISLKDLREKDEEGNYRADDFYSEGGLIE 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YLD +K+ +++ PI I+  ++ + + +AM +N+ Y ENV+ + N I   +GGTH+SG
Sbjct: 120 FVEYLDENKQKIIEKPIYIESEKNGVPVQVAMGYNNSYTENVVSYVNTINTYEGGTHVSG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR + SY +KS    K K  + GDD REG T+V+S+K+ +P+F  QTK KL +S+
Sbjct: 180 FRRALTRTLKSYADKSGMLDKGKIDISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSD 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V++ V++ L  WL EHP EAKII+ KV+ A+  R AA++AR++ +RK VL    LP
Sbjct: 240 VTGAVDASVSETLQFWLLEHPKEAKIIIGKVVLAAQARHAAKKAREMVQRKNVLGGGGLP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC+  DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+A+  K+  +
Sbjct: 300 GKLADCANSDPAVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAQEHKIXDN 359

Query: 472 QEIGTLITALGTGIGQDSFDIN----KLRYH 498
            EI  ++TALG   G  + +      KLRYH
Sbjct: 360 DEIKNILTALGVKFGTANDEKELDLSKLRYH 390


>gi|146164124|gb|ABQ08729.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|146164128|gb|ABQ08730.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|146164130|gb|ABQ08731.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|146164132|gb|ABQ08732.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|146164137|gb|ABQ08733.1| DNA gyrase subunit beta [Aeromonas molluscorum]
          Length = 368

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 220/371 (59%), Positives = 283/371 (76%), Gaps = 4/371 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + N TGTEV F PS+ 
Sbjct: 1   HGVGVSVVNALSEKLLLTIRRNGHVYEQTYHMGEPQAPLKQIGDS-NGTGTEVRFWPSAT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++YD L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYDILAKRLRELSFLNSGVSIRLEDER--DGREVHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q        +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHQKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
            +Y+++   SKK K S   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 NTYMDREDYSKKAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 238 MGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVERARFD+M+SSQE+GTLIT
Sbjct: 298 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVERARFDRMISSQEVGTLIT 357

Query: 480 ALGTGIGQDSF 490
           ALG GIG+D +
Sbjct: 358 ALGCGIGRDEY 368


>gi|67472224|ref|XP_651972.1| DNA topoisomerase II [Entamoeba histolytica HM-1:IMSS]
 gi|40804954|gb|AAR91745.1| topoisomerase II [Entamoeba histolytica]
 gi|56468768|gb|EAL46584.1| DNA topoisomerase II, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1349

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 131/599 (21%), Positives = 220/599 (36%), Gaps = 66/599 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT------------------------- 35
           MS   +      D    L   + +  RP  YIG                           
Sbjct: 1   MSKEKEKLE---DIYVKLSHKEQILTRPDTYIGSVERNDEQVWIYEEPSEQYSEGRMIQK 57

Query: 36  --DGESGLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92
                 GL  +  E+L NA D          I VT+    S TV +NG+GIP ++HK+E 
Sbjct: 58  VISLAPGLFKIYDEILVNASDNFQRDPKMTTIKVTI-EGNSITVYNNGKGIPIEIHKKEH 116

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           I   E+I   L     +     KV+GG +G G  + N  S+   +       IY+ ++ N
Sbjct: 117 IYIPELIFGHLLTSSNYKDDDKKVTGGRNGYGAKLANIFSTKFSIETCDGKKIYKQTWKN 176

Query: 153 GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQI 208
            + D       S    +  T+VTF P    F ++    D    L  R  +++  N   +I
Sbjct: 177 NMSDKEEPEIESVKKVEEYTKVTFTPDYKRFQMKGMEDDARMLLIRRAYDIAGCNPGKRI 236

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            +  K+                   + +    +P++       G R +I +  +      
Sbjct: 237 WINGKKVCFKNFAEY----------ARMYVGDEPIVSEKA---GERWDICVCAS-----K 278

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
                + F N+I    GGTH+  +   +T+ +    EK     K    +     +     
Sbjct: 279 GEPMQISFVNSINTSHGGTHVDYVTGLMTKYL---AEKMKKLNKKGAEIKPFQIKNHLFV 335

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            ++  + +P F SQTKE L     ++ V  F +    +      L    +V  +L  ++ 
Sbjct: 336 FVNSLIENPAFDSQTKETL-----KTQVNKFGSKPSLSDKFFKELGKLSVVDDILAWAIK 390

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---R 445
           +      +   ++   +              ++     L L EGDSA   A  G S   R
Sbjct: 391 KGEMDLNKSGGKKTARITGIPKLDDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGR 450

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           +   + PLRGK LN       K+  + E   +   +G   G+    I++LRY  ++IM D
Sbjct: 451 DYYGVFPLRGKPLNAREIAPSKVKENHEFENIAKIMGLRYGKVYTSIDELRYGSVMIMAD 510

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYL 563
            D DG+HI+ LL+ +F    PSL+      +    P+  + RGK            ++ 
Sbjct: 511 QDFDGSHIKGLLINYFHTFWPSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQFNEWK 569


>gi|283132383|dbj|BAI63597.1| DNA gyrase subunit B [Leptospira noguchii]
          Length = 389

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 190/391 (48%), Positives = 279/391 (71%), Gaps = 5/391 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G IY   +  G+  +P+   G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYQKGVPVSPVQPKGDSS-ERGTVV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEA 231
            F P + IF+  DF +D L  R REL+FLN  + + + D+R  +         + GGI +
Sbjct: 60  RFKPDATIFTTVDFQFDVLSARFRELAFLNKGLVLVVEDRRRGQDNLLRNEFQFSGGIVS 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G
Sbjct: 120 FVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++
Sbjct: 179 FRAALTRTLNDFLKKDSALSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNA 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   L
Sbjct: 239 EIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS
Sbjct: 299 PGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 SEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 389


>gi|51571581|emb|CAH18957.1| gyrase B [Corallococcus coralloides]
          Length = 374

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 198/377 (52%), Positives = 266/377 (70%), Gaps = 3/377 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y VSGGLHGVGV+ VN LS W K+RI+R G + E  +  G+ ++P    G   +  GT
Sbjct: 1   GAYXVSGGLHGVGVTCVNFLSEWFKVRIQRNGKVXEQGYARGVANSPPTEVG-TTDKRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P   I    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  MIHFKPDPTIMETADFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGIAS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVFIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+ + +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAEKGGAWKDLKETPTGEDAREGLSAVISVNVSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V KV DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPVAKKVVAKVGDACRARIAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP++SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPQESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTGIGQD 488
            EI TLITALGTGIG +
Sbjct: 358 AEIVTLITALGTGIGAE 374


>gi|15530009|gb|AAL01492.1| gyrase B [Shewanella baltica]
          Length = 369

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 218/371 (58%), Positives = 285/371 (76%), Gaps = 4/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F PS
Sbjct: 1   GLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            D FS  +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R
Sbjct: 60  EDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNR 117

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+ +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 NKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC
Sbjct: 238 QTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 298 QEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 357

Query: 478 ITALGTGIGQD 488
           ITALG GIG+D
Sbjct: 358 ITALGCGIGRD 368


>gi|51571605|emb|CAH18969.1| gyrase B [Corallococcus coralloides]
          Length = 382

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 199/383 (51%), Positives = 271/383 (70%), Gaps = 3/383 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGV+ VN LS W K+RI+R G +YE S+  G+ +      G   +  GT + F P + +
Sbjct: 3   GVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVANGAPQEVG-TTDKRGTMIHFKPDTQV 61

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
               DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    ++GGI +FV YL++ K+
Sbjct: 62  METVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFEGGISSFVEYLNKAKE 119

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + 
Sbjct: 120 ALHDKPVFIKTEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAALTRTLN 179

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VN
Sbjct: 180 SYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGLVEQMVN 239

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D L+++LEE+P  AK +  K+ DA   R AAR+AR+  RRKGVLD   LPGKLADC  RD
Sbjct: 240 DQLASFLEENPPLAKKVAAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQSRD 299

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITAL
Sbjct: 300 PHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLITAL 359

Query: 482 GTGIGQDSFDINKLRYHKIIIMT 504
           GTGIG + +D  K RYH+II+MT
Sbjct: 360 GTGIGAEDYDPEKARYHRIILMT 382


>gi|327200405|gb|AEA36082.1| DNA gyrase subunit B [Rhizobium huautlense]
          Length = 358

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 254/358 (70%), Positives = 305/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+SF +G+ D PL V G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKVHEISFTHGVADAPLKVIGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S   F++ +++Y+TL+HRLREL+FLNS V+I L DKR P+ RE  M Y GG+EAFV Y
Sbjct: 61  LASPQTFTMTEYDYNTLEHRLRELAFLNSGVRIRLTDKRKPDIREEEMLYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL++ P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVEKPVAIKGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYADTSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS W EEHP EAKI+V KV++A++ R+AAR+AR+LTRRKGVLDIASLPGKLA
Sbjct: 241 VESLVNEALSTWFEEHPTEAKILVGKVVEAAVAREAARKARELTRRKGVLDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|86169567|gb|ABC87023.1| DNA gyrase subunit B [Leuconostoc fallax KCTC 3537]
          Length = 393

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 183/394 (46%), Positives = 265/394 (67%), Gaps = 3/394 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDT 169
              YKVSGGLHGVG SVVNALS+ L +++ REG +Y M F  G ++ P+ +   A   + 
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELDVKVVREGKVYYMDFKTGRVNTPMTILDEAPTIER 60

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F P +DIF     +NY+TL  R+REL+FLN  ++IS+ DKR  +  + +  ++GG
Sbjct: 61  GTIVHFKPDTDIFRETITYNYNTLLTRVRELAFLNKGLRISVQDKRPTDAVKESFHFEGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ +V YL++ K  +   P+ ++G    I +++A+++     +N+  FTNNI   +GGTH
Sbjct: 121 IKEYVEYLNKDKSVIFPEPVYVEGEEKGIVVEVALQYTTEVRDNLRTFTNNINTYEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ALTR I  Y  K+   K+   S+ G+D REG T+++SIK PDP+F  QTK KL 
Sbjct: 181 ETGFKTALTRVINDYARKNGQLKESAESLSGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +S+ R   +   ++  S ++ E+P  A+ IV+K + A   R AA+RAR++TR++  L+I 
Sbjct: 241 NSDARQATDRMFSETFSRFMMENPAVARQIVEKGILAQRARLAAKRAREMTRKQSGLEIG 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLAD    DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNV +A  DK+
Sbjct: 301 NLPGKLADNISNDPSLSELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKATLDKV 360

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L+++EI +L TA+GTG G+D FD+ K  YHK+II
Sbjct: 361 LANEEIRSLFTAMGTGFGKD-FDVEKAHYHKVII 393


>gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
 gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
          Length = 1223

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 134/599 (22%), Positives = 234/599 (39%), Gaps = 56/599 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT----------DGES------------ 39
           +  I++ +   +  Q    L+ +  RP  YIG            D E+            
Sbjct: 24  AKKIKSKTTVEEIYQKKSQLEHILLRPDTYIGSVEPVKENMWIYDNETEKMIQKDITYVP 83

Query: 40  GLHHMIYEVLDNAIDESLE-GYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D        D I + ++  + + +V +NG+GIP   HKEE +    
Sbjct: 84  GLYKIFDEILVNAADNKQRDKKMDCIKIDIDAENNTVSVWNNGQGIPVVEHKEEKMFVPT 143

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL 155
           +I   L     +N +  KV+GG +G G  + N  S+   L          ++ ++ N + 
Sbjct: 144 MIFGYLLTSSNYNDEEEKVTGGRNGYGAKLCNIFSTKFTLETASIEYKRKFKQTWANNMT 203

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLID 212
                       +  T+VTF P    F +   + D    +  R  +++     V++ L  
Sbjct: 204 KTTDPKISDFFGEDFTKVTFSPDLAKFKMTHLDKDIVDLMSRRAYDVAASTRGVKVILNG 263

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           KR               + +V    + K+    +P++I     N   ++A+  +D   + 
Sbjct: 264 KR---------LPIKSFKDYVELYTKGKEDDAGNPVKIIYENVNERWEVAVTMSDNDFQQ 314

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N+I    GG H+  +   L +++     K   +      +     +      ++ 
Sbjct: 315 V-SFVNSIATTKGGRHVDHVTDILVKKLLEVCNKKNKAGMQ---LKAHQIKNHLWIFINC 370

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
            + +P F SQTK  +         +  ++D        +  +  +I   +  A    +A 
Sbjct: 371 LIVNPTFDSQTKTHMTLQMKNFGSKCTLSDK----FITNVTKCGVIEAVLSWAKFKAEAQ 426

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSREN 447
              +   ++   L   +      D   ++     L L EGDSA      G    GR +  
Sbjct: 427 MDRKCSGKKMTKLKGIAKLEDANDAGTKNSVNCTLILTEGDSAKSLAVSGLGVVGRDK-- 484

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMT 504
             + PLRGK+LNV  A   ++L + EI  LI  LG    +     +    LRY K++IMT
Sbjct: 485 YGVFPLRGKLLNVREATHKQILENAEINNLIKILGLQYKKKYESSDDLKTLRYGKLMIMT 544

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           D D DG+HI+ L++ F     PSL+   FL     P+   T+GK           ED+ 
Sbjct: 545 DQDQDGSHIKGLIINFIHHNWPSLLRLPFLEEFITPIVKATKGKEELSFYSLPEFEDWK 603


>gi|119226152|dbj|BAF41055.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|211927089|dbj|BAG82797.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927091|dbj|BAG82798.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927097|dbj|BAG82801.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927099|dbj|BAG82802.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308152449|dbj|BAJ22203.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152497|dbj|BAJ22227.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 421

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 179/424 (42%), Positives = 256/424 (60%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ L++ I  +G  +E ++        L + G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTTLEVEIDNDGYHWEQTYTASKP-GEL-IRGEATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T V F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWPDPEIFETTTFNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTDEDVPETAE 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +  T  Y GG+E +V +++R K P+  S +          
Sbjct: 119 APKTAEDQAVEAAEPEVHKVKVRTYHYPGGLEDYVRHINRTKTPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ 
Sbjct: 179 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKEKDPNLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ +S W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP K E+++VEGDSAGGS
Sbjct: 299 VTKAVSSAHARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI ++ FDI+KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHEE-FDISKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|154151176|ref|YP_001404794.1| DNA gyrase, B subunit [Candidatus Methanoregula boonei 6A8]
 gi|153999728|gb|ABS56151.1| DNA gyrase, B subunit [Methanoregula boonei 6A8]
          Length = 708

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 198/424 (46%), Positives = 277/424 (65%), Gaps = 6/424 (1%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT + F+P + IF    F+YD L HRLREL+FLN+ + I + D+R+ +         GG
Sbjct: 236 TGTRIHFVPDASIFETTTFDYDVLAHRLRELAFLNAGLTIIITDERTGDSATYCY--AGG 293

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNNIPQKDGG 286
           +  FV YL+   + L  +PI I        +  ++AM++  GY E +  + N++  ++GG
Sbjct: 294 LSEFVKYLNEGNEVLHPNPIYITKKDAENKLDLEVAMQYTTGYDEKLYTYVNSVNTREGG 353

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           THL G RSA+TR I    +++   K++ + ++ G+D REG TSV+S+KM +P+F  QTK 
Sbjct: 354 THLEGFRSAITRGINVVAKRNGIIKENAQVTLRGEDVREGLTSVVSVKMANPQFEGQTKM 413

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           +L +S V+ +V+S V   L+ + +E+P   KIIV+K L A+  R+AAR ARDL RRK  L
Sbjct: 414 RLGNSSVKGIVDSLVYAALTEYFDENPGVLKIIVEKALSAAKAREAARNARDLARRKSSL 473

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           + A LPGKL+DCSERDP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+A  
Sbjct: 474 ESAGLPGKLSDCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKAGE 533

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            ++L + EI TLI A+GTGIG+  FD  + RYH+I+IMTDADVDGAHIRTLLLTFF+R M
Sbjct: 534 HQILKNAEIQTLINAIGTGIGEK-FDPERARYHRIVIMTDADVDGAHIRTLLLTFFYRYM 592

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
             LI  G++YI +PPL+ I +GK  +YV  E  ++                   G ++  
Sbjct: 593 RKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAMGDKGVSIQRYKGLGEMNAQ 652

Query: 586 DLRN 589
            L +
Sbjct: 653 QLWD 656



 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 91/165 (55%), Positives = 118/165 (71%), Gaps = 6/165 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+D     +YDA  I +L+GL  V++RP+MYIG TD   GLHH++YEV+DN+IDE+L G+
Sbjct: 1   MTD-----TYDASHITVLEGLQPVRERPAMYIGSTD-TRGLHHLVYEVVDNSIDEALAGF 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I V +N DGS  V DNGRGIP D  ++   SA EV++T LHAGGKF++++Y+VSGGL
Sbjct: 55  CNRICVVINKDGSLMVEDNGRGIPVDTMEKNHKSALEVVLTVLHAGGKFDKETYQVSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           HGVGVSVVNALS+WL  R+ R+GNIYEM F  G    PL      
Sbjct: 115 HGVGVSVVNALSNWLSARVYRDGNIYEMRFSQGKTTLPLTTREET 159



 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 1/184 (0%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E   E  +   +++   +N I     + +         +V      V    +    
Sbjct: 525 ILNVEKAGEHQILKNAEIQTLINAIGTGIGEKFDPERARYHRIVIMTDADVDGAHIRTLL 584

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740
             F +    K I    +      +  +    ++  +     +     ++G KG+S+QRYK
Sbjct: 585 LTFFYRYMRKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAMGDKGVSIQRYK 644

Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799
           GLGEMNA QLW+TT++P+ R  L+V I DA +AD++F  LMG +VE R+ FI  ++    
Sbjct: 645 GLGEMNAQQLWDTTMDPENRIFLKVSIEDAYEADEMFKTLMGKDVEIRKNFIMRHAKEVT 704

Query: 800 ALDI 803
            LDI
Sbjct: 705 NLDI 708


>gi|209863327|gb|ACI88763.1| DNA gyrase subunit B [Aeromonas sp. JH124]
          Length = 365

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 219/368 (59%), Positives = 279/368 (75%), Gaps = 3/368 (0%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P
Sbjct: 60  SDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTP 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + S
Sbjct: 118 IHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNS 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + +
Sbjct: 178 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 237

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP
Sbjct: 238 KLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 297

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 357

Query: 483 TGIGQDSF 490
            GIG+D +
Sbjct: 358 CGIGRDEY 365


>gi|163256307|dbj|BAF95664.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3D]
          Length = 269

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 151/265 (56%), Positives = 189/265 (71%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN IDE+L G+A  + VTLN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGK
Sbjct: 1   VDNEIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIHKGEGISAAEVIMTQLHAGGK 60

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+Q SYKVSGGLHGVGVSVVNALSS L+LRI R+   + + F +G    PL V G A   
Sbjct: 61  FDQNSYKVSGGLHGVGVSVVNALSSKLELRIWRDDKEHYIEFAHGDAVAPLRVVGEAPGK 120

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEVTF  + + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG
Sbjct: 121 RGTEVTFHAAVETFKNVEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGG 180

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTH
Sbjct: 181 VEEFVKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTH 240

Query: 289 LSGLRSALTRQITSYVEKSFGSKKD 313
           L+G R ALTRQ+  Y E +   +K 
Sbjct: 241 LAGFRGALTRQVNGYAEPNAKKEKI 265


>gi|27530829|dbj|BAC54062.1| DNA gyrase subunit B [Nocardia nova]
          Length = 416

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 176/419 (42%), Positives = 253/419 (60%), Gaps = 30/419 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETAE 118

Query: 214 ----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +  T  Y GG+E FV +++R K+P+  + +          +++AM
Sbjct: 119 APKHDEGAAAPEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGHELEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K +
Sbjct: 239 EGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
               QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 DSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 416


>gi|163256303|dbj|BAF95662.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3B]
          Length = 269

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 152/265 (57%), Positives = 188/265 (70%)

Query: 49  LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +DN IDE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGK
Sbjct: 1   VDNGIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGK 60

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A   
Sbjct: 61  FDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGR 120

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG
Sbjct: 121 RGTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGG 180

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTH
Sbjct: 181 VEEFVKYLDRNKKAIVPAPIMVRADANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTH 240

Query: 289 LSGLRSALTRQITSYVEKSFGSKKD 313
           L+G R ALTRQ+  Y E +   +K 
Sbjct: 241 LAGFRGALTRQVNGYXEANAKKEKI 265


>gi|308153176|dbj|BAJ22177.1| DNA gyrase subunit B [Mycobacterium avium]
          Length = 421

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 184/422 (43%), Positives = 255/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ I R+G  +   + + +    L   G A   TG
Sbjct: 3   NSGYNVSGGLHGVGVSVVNALSTRLEVNIARDGYKWSQYYDHAVP-GTLKQ-GEATKRTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    DIF   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSDTAD 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+ QS I   G      ++
Sbjct: 121 APKSAQEKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK+IV 
Sbjct: 241 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|209863339|gb|ACI88769.1| DNA gyrase subunit B [Aeromonas sp. JH64]
          Length = 365

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 217/368 (58%), Positives = 279/368 (75%), Gaps = 3/368 (0%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +   ++Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P
Sbjct: 60  TDTLYHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTP 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + S
Sbjct: 118 IHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNS 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + +
Sbjct: 178 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 237

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP
Sbjct: 238 KLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 297

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 357

Query: 483 TGIGQDSF 490
            GIG+D +
Sbjct: 358 CGIGRDEY 365


>gi|259018184|gb|ACV89684.1| DNA gyrase subunit B [Nocardia beijingensis]
          Length = 414

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 178/417 (42%), Positives = 251/417 (60%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  +   G  +   + +      L + G     TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQAEVDTGGYHWTQEYKDAKP-GKL-IQGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P  +IF    FN++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWPDPEIFETTTFNFETVARRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHAEDAAAPAEHKVKSRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 414


>gi|259018168|gb|ACV89676.1| DNA gyrase subunit B [Nocardia veterana]
          Length = 414

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 174/417 (41%), Positives = 249/417 (59%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ +   I R+G  +   + +      L V G   N TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMVTEIDRDGFHWTQEYKDAKP-GKL-VKGEPTNRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F     +F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPAVFETTTYNFETIARRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETAD 118

Query: 214 -----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  + +          +++A
Sbjct: 119 APKHDDGESQAPEQKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 414


>gi|259018162|gb|ACV89673.1| DNA gyrase subunit B [Nocardia elegans]
          Length = 413

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 175/416 (42%), Positives = 250/416 (60%), Gaps = 30/416 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETAE 118

Query: 214 ----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +  T  Y GG+E FV +++R K+P+  + +          +++AM
Sbjct: 119 APKHDEGAATPEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGHELEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K +
Sbjct: 239 EGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
               QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 DSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 413


>gi|133778470|dbj|BAF49241.1| DNA gyrase B subunit [Leptospira kirschneri serovar Vanderhoedeni]
 gi|133778488|dbj|BAF49250.1| DNA gyrase B subunit [Leptospira kirschneri]
 gi|133778490|dbj|BAF49251.1| DNA gyrase B subunit [Leptospira kirschneri]
          Length = 389

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 188/391 (48%), Positives = 278/391 (71%), Gaps = 5/391 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G IY   +  G+  + + + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGVPVSSVQIQGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEA 231
            F P + IF+  DF +D L  R REL+FLN  + + + D R  +         + GGI +
Sbjct: 60  RFKPDATIFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVS 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G
Sbjct: 120 FVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++
Sbjct: 179 FRAALTRTLNDFLKKDSALSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNA 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   L
Sbjct: 239 EIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS
Sbjct: 299 PGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+EI  L++ALGTGIG+D F+++K+RYHKI+
Sbjct: 359 SEEIRVLVSALGTGIGEDEFNVDKIRYHKIM 389


>gi|259018196|gb|ACV89690.1| DNA gyrase subunit B [Nocardia africana]
          Length = 413

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 175/416 (42%), Positives = 250/416 (60%), Gaps = 30/416 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGYHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETAE 118

Query: 214 ----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +  T  Y GG+E FV +++R K+P+  + +          +++AM
Sbjct: 119 APKHDEGASAPEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGHELEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K +
Sbjct: 239 EGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
               QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 DSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 413


>gi|23451185|gb|AAN32697.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 372

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 214/374 (57%), Positives = 278/374 (74%), Gaps = 2/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GD  REG  +V+S+K+PDP+FSSQTK+KL SS+V++ V+   
Sbjct: 179 NTYMDKEDYSKKAKSAASGDXVREGLIAVISVKVPDPKFSSQTKDKLGSSKVKTXVKPAX 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              L     E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GXKLXEVXVENPGDAKIVVTKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 358

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 359 LGCGIGRDEYNPDK 372


>gi|302746268|gb|ADL62724.1| GyrB [Morganella morganii subsp. sibonii]
          Length = 366

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 220/368 (59%), Positives = 279/368 (75%), Gaps = 4/368 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVN LS  L+L I+R+G ++E  + +G   + L V G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTGTRVRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS D F    +F YD L  RLRELSFLNS V I LIDKR  +       Y+GGI+AFV 
Sbjct: 60  WPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL R K  +  +       +D+I ++++M+WND + ENV CFTNNIPQ+DGGTHL+G R+
Sbjct: 118 YLSRAKTSIHNNVFYFSTEKDDIGVEVSMQWNDSFQENVYCFTNNIPQRDGGTHLAGFRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY+EK   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ LS +L+E+P + KIIV K++DA+  R+AARRAR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLSEYLDENPSDTKIIVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+
Sbjct: 298 ADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEV 357

Query: 475 GTLITALG 482
            TLITALG
Sbjct: 358 ATLITALG 365


>gi|327200341|gb|AEA36050.1| DNA gyrase subunit B [Agrobacterium rubi]
          Length = 358

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 244/358 (68%), Positives = 299/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G I+E+SF +G+ D PL + G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S++ F++ ++ Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+ AFV Y
Sbjct: 61  LASTETFTMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIKQEEMLYDGGLAAFVQY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I G +D I++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRSKKPLVDKPVYIIGEKDGITVEVAMWWNDTYHENMLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY + S  +K++K S+ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ VN+ LS W EEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 241 VENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALDISSLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|6729243|dbj|BAA89743.1| DNA gyrase subunit B [Mycobacterium avium]
 gi|308152543|dbj|BAJ22250.1| DNA gyrase subunit B [Mycobacterium avium subsp. paratuberculosis]
 gi|308153178|dbj|BAJ22178.1| DNA gyrase subunit B [Mycobacterium avium]
 gi|308153180|dbj|BAJ22179.1| DNA gyrase subunit B [Mycobacterium avium]
 gi|308153182|dbj|BAJ22180.1| DNA gyrase subunit B [Mycobacterium avium]
          Length = 421

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 184/422 (43%), Positives = 255/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ I R+G  +   + + +    L   G A   TG
Sbjct: 3   NSGYNVSGGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVP-GTLKQ-GEATKRTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    DIF   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSDTAD 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+ QS I   G      ++
Sbjct: 121 APKSAQEKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK+IV 
Sbjct: 241 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|195345101|ref|XP_002039114.1| Top2 [Drosophila sechellia]
 gi|194134244|gb|EDW55760.1| Top2 [Drosophila sechellia]
          Length = 1448

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 132/744 (17%), Positives = 260/744 (34%), Gaps = 75/744 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 14  YQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLYKIFDEILVNA 73

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I + ++ +    +V +NG+GIP  +HKE+ +    +I   L     +N
Sbjct: 74  ADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMHKEQKMYVPTMIFGHLLTSSNYN 133

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRI----KREGNIYEMSFINGILDNPLVVTGSAG 166
               KV+GG +G G  + N  S+   +       R    ++ ++ N +     V      
Sbjct: 134 DDEKKVTGGRNGYGAKLCNIFSTSFTVETATKEYR--KSFKQTWGNNMGKASDVQIKDFN 191

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
               T +TF P    F +   + D    +  R  +++  +  V + L   +         
Sbjct: 192 GTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVSVFLNGNKLAVRNFKDY 251

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
                    +   D    P ++    +   R  ++   + R         + F N+I   
Sbjct: 252 IDL-----HIKSTDEDSGPPIKIVHEVANERWEVACCPSDR-----GFQQVSFVNSIATY 301

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG H+  +   L +Q+   ++K     K   ++     R      ++  + +P F SQT
Sbjct: 302 KGGRHVDHVVDNLIKQLLEVLKKKN---KGGINIKPFQVRNHLWVFVNCLIENPTFDSQT 358

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE +   +     +  ++D     + +       IV+ VL  +  +     A+   R+  
Sbjct: 359 KENMTLQQKGFGSKCTLSDKFINNMSKSG-----IVESVLAWAKFKAQNDIAKTGGRKSS 413

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNV 460
            +          +   ++     L L EGDSA   A  G     R++  + PLRGK+LNV
Sbjct: 414 KIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRDHYGVFPLRGKLLNV 473

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLL 517
             A + ++  + E+  L   +G    +     +    LRY K++IMTD D DG+HI+ LL
Sbjct: 474 REANYKQLSENAEVNNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLL 533

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           + F     P L+   FL     P+   T+             E++  + +      +   
Sbjct: 534 INFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNIKYY 593

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                S          + +  +  +D   +      + +V          ++   S    
Sbjct: 594 KGLGTS---------TSKEAKEYFQDMERHRILFKYDGSVDDESIIMAFSKKHIESRKVW 644

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L N ++ +  + E            L  +  + +     +    +    +  +R   + +
Sbjct: 645 LTNHMDEVKRRKELGL-----PERYLYTKGTKSITYADFINLELVLFSNADNERSIPSLV 699

Query: 698 EENYLTILSLI----CNGDKIKIT 717
           +        ++       DK ++ 
Sbjct: 700 DGLKPGQRKVMFTCFKRNDKREVK 723


>gi|133778482|dbj|BAF49247.1| DNA gyrase B subunit [Leptospira interrogans serovar Hebdomadis]
          Length = 389

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 189/391 (48%), Positives = 278/391 (71%), Gaps = 5/391 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G +Y   +  GI  + + + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKVYTQKYERGIPVSSVQIQGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEA 231
            F P + IF+  DF +D L  R REL+FLN  + + + D R  +         + GGI +
Sbjct: 60  RFKPDATIFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVS 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G
Sbjct: 120 FVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++
Sbjct: 179 FRAALTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNA 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   L
Sbjct: 239 EIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS
Sbjct: 299 PGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 SEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 389


>gi|133778476|dbj|BAF49244.1| DNA gyrase B subunit [Leptospira interrogans serovar Copenhageni]
 gi|133778478|dbj|BAF49245.1| DNA gyrase B subunit [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|133778480|dbj|BAF49246.1| DNA gyrase B subunit [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|133778484|dbj|BAF49248.1| DNA gyrase B subunit [Leptospira interrogans serovar Australis]
 gi|133778486|dbj|BAF49249.1| DNA gyrase B subunit [Leptospira interrogans serovar Autumnalis]
 gi|283132381|dbj|BAI63596.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|283132385|dbj|BAI63598.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|283132395|dbj|BAI63603.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|283132397|dbj|BAI63604.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|283132399|dbj|BAI63605.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 389

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 188/391 (48%), Positives = 278/391 (71%), Gaps = 5/391 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G +Y   +  G+  + + + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEA 231
            F P + IF+  DF +D L  R REL+FLN  + + + D R  +         + GGI +
Sbjct: 60  RFKPDATIFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVS 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G
Sbjct: 120 FVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++
Sbjct: 179 FRAALTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNA 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   L
Sbjct: 239 EIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS
Sbjct: 299 PGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 SEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 389


>gi|259018188|gb|ACV89686.1| DNA gyrase subunit B [Nocardia araoensis]
          Length = 414

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 178/417 (42%), Positives = 251/417 (60%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  +   G  +   + +      L + G     TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQAEVDTGGYHWTQEYKDAKP-GKL-IQGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P  +IF    FN++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWPDPEIFETTTFNFETVARRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 GPKHAEEGAAPAEHKVKSRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 414


>gi|133778466|dbj|BAF49239.1| DNA gyrase B subunit [Leptospira kirschneri serovar Grippotyphosa]
 gi|133778468|dbj|BAF49240.1| DNA gyrase B subunit [Leptospira kirschneri serovar Ratnapura]
 gi|133778474|dbj|BAF49243.1| DNA gyrase B subunit [Leptospira kirschneri serovar Ndahambukuje]
          Length = 389

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 187/391 (47%), Positives = 278/391 (71%), Gaps = 5/391 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G +Y   +  G+  + + + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEA 231
            F P + IF+  DF +D L  R REL+FLN  + + + D R  +         + GGI +
Sbjct: 60  RFKPDATIFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVS 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL G
Sbjct: 120 FVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV++
Sbjct: 179 FRAALTRTLNDFLKKDSALSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNA 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+   L
Sbjct: 239 EIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGL 298

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+LS
Sbjct: 299 PGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILS 358

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S+EI  L++ALGTGIG+D F+++K+RYHKI+
Sbjct: 359 SEEIRVLVSALGTGIGEDEFNVDKIRYHKIM 389


>gi|326649336|gb|AEA02126.1| DNA gyrase subunit B [Rhizobium sp. Ch12]
 gi|326649338|gb|AEA02127.1| DNA gyrase subunit B [Rhizobium sp. AL9.3]
 gi|327200383|gb|AEA36071.1| DNA gyrase subunit B [Rhizobium sp. Ch11]
          Length = 358

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 245/358 (68%), Positives = 299/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G I+E+SF +G+ D PL + G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S++ F++ ++ Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+ AFV Y
Sbjct: 61  LASTETFTMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIKQEEMLYDGGLAAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I G +D I++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVDKPVYIIGEKDGITVEVAMWWNDTYHENMLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY + S  +K++K S+ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ VN+ LS W EEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|305861862|gb|ADM72889.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 386

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 222/389 (57%), Positives = 290/389 (74%), Gaps = 4/389 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGV VSV NALS  L++ I+R G +Y   +  G+ D P+   G A   TGTE+ F 
Sbjct: 1   SGGLHGVSVSVANALSXKLRMSIRRAGKVYXXFYTLGVPDAPIKEIGDAT-KTGTEIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S D FS  +F+++ L  R+REL FL S V I L+D+R  +       Y  GI AFV YL
Sbjct: 60  XSEDTFSDVEFHFEILXKRVRELXFLXSGVGIRLVDERDXKN--EFFKYXXGISAFVDYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSA
Sbjct: 118 NRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY+E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLA
Sbjct: 238 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ 
Sbjct: 298 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 357

Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMT 504
           TLITALG GIG+D ++ +K RYH IIIMT
Sbjct: 358 TLITALGCGIGRDEYNPDKTRYHNIIIMT 386


>gi|259018150|gb|ACV89667.1| DNA gyrase subunit B [Nocardia higoensis]
          Length = 414

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 178/417 (42%), Positives = 252/417 (60%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS +++ I  +G  +  ++ +      L V G   + TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKDSKP-GKL-VQGEPTSRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T V F    +IF    FN++T+  RL+E++FLN  + I+L D+R  +             
Sbjct: 59  TTVRFWADPEIFETTTFNFETVARRLQEMAFLNKGLTITLTDERVSDTDITDDVVSEHAE 118

Query: 223 --------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                                 Y GG+E FV +++R K+ +  S +   G      +++A
Sbjct: 119 APKPGEAVDKPVEQKVKARTYHYPGGLEDFVRHINRTKQSIHNSVVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+ + ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKIAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 414


>gi|6729255|dbj|BAA89749.1| DNA gyrase subunit B [Mycobacterium marinum]
          Length = 421

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 184/422 (43%), Positives = 256/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ IKR+G  +   +        L   G A   TG
Sbjct: 3   NSGYNVSGGLHGVGVSVVNALSTRLEVDIKRDGYEWSQFYDRAQP-GTLKQ-GEATKKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F   SDIF   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADSDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTPDEVVDDVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+ QS +  +G      ++
Sbjct: 121 APKSAQEKAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKSPIQQSIVDFEGKGSGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+++ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK IV 
Sbjct: 241 DIREGLAAVISVRVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTIVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARLAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD++KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLSKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|119369956|gb|ABL67992.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 174/429 (40%), Positives = 235/429 (54%), Gaps = 13/429 (3%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF  K Y  SGGLHGVG SVVNALS WL++ + RE   + M F  G   
Sbjct: 1   EVIMTVLHAGGKFGGKVYDTSGGLHGVGSSVVNALSEWLEVEVARERQNHVMRFERGKPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLID--- 212
             L  TG + N  GT V F P + IF S   F+   L    +  ++L   V+I       
Sbjct: 61  GKLKNTG-SVNRRGTIVRFKPDAQIFGSEAHFSPAMLYRMAKSKAYLFRGVEIHWRCDPG 119

Query: 213 --KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS--IDLAMRWNDG 268
             +    P +  + + GG+  F+      +  +       +    +    ++ A+ W   
Sbjct: 120 LIRNGKTPADEILKFPGGLADFLRSEIEGETTVSPRLFLGRTENKDGKGAVEWAVAWAPE 179

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
               +  F N IP   GGTH  GLR+ALT+ + +Y E++   K  +  +  DD      +
Sbjct: 180 RDGFMQSFCNTIPTPLGGTHEQGLRNALTKALRAYGERAGNKKTAQ--ITPDDVMSAACA 237

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VLS+ + +P F  QTKEKL + + + +VE+ V D    WL E P EA  ++  V+D +  
Sbjct: 238 VLSVFIREPEFQGQTKEKLSTQDAQRLVETVVRDHFDHWLAESPAEADRLLSFVIDQADD 297

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R   R+ R+ T+RK       LPGKL DC+   P  +ELFLVEGDSAGGSAKQ R R  Q
Sbjct: 298 RLKRRQERE-TQRKSATRKLRLPGKLTDCTRDAPGGTELFLVEGDSAGGSAKQARDRTTQ 356

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           A+LPLRGKILNV  A   K+  +QE+  L+ ALG G G   +   +LRY ++IIMTDADV
Sbjct: 357 AVLPLRGKILNVASAAAGKLAQNQELSDLLLALGCGAGSK-YREEELRYERVIIMTDADV 415

Query: 509 DGAHIRTLL 517
           DG+HIRTLL
Sbjct: 416 DGSHIRTLL 424


>gi|119226154|dbj|BAF41056.1| DNA gyrase subunit B [Rhodococcus ruber]
 gi|211927095|dbj|BAG82800.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308152463|dbj|BAJ22210.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 420

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 179/423 (42%), Positives = 254/423 (60%), Gaps = 34/423 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ L++ I R+G  +E ++ +       +V G     TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKLEVEIDRDGYHWEQTYQSSKPGT--LVKGEPTRATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    DIF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPDIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTDEVVSELAE 118

Query: 215 ---------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
                            + +     Y GG+E +V +++R K+P+  S +          +
Sbjct: 119 APKKAEEQEQAEIEQQHKVKVRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHEL 178

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ G
Sbjct: 179 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTG 238

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ LS WLE +P +AK IV
Sbjct: 239 DDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLSHWLEANPADAKTIV 298

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGSA
Sbjct: 299 TKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSA 358

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           K GR    QAILPLRGKI+NVE+AR D++L + E+  +ITA GTGI  D FDI+KLRYHK
Sbjct: 359 KSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQAIITAFGTGI-HDEFDISKLRYHK 417

Query: 500 III 502
           I++
Sbjct: 418 IVL 420


>gi|327200345|gb|AEA36052.1| DNA gyrase subunit B [Agrobacterium rubi]
          Length = 358

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 244/358 (68%), Positives = 299/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G I+E+SF +G+ D PL + G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S++ F++ ++ Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+ AFV Y
Sbjct: 61  LASTETFTMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIKQEEMLYDGGLAAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I G +D I++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRSKKPLVDKPVYIIGEKDGITVEVAMWWNDTYHENMLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY + S  +K++K S+ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ VN+ LS W EEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 241 VENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALDISSLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|66474593|gb|AAY46866.1| GyrB [Aeromonas molluscorum]
          Length = 372

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 220/375 (58%), Positives = 286/375 (76%), Gaps = 4/375 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + N TGTEV F PS+ 
Sbjct: 1   HGVGVSVVNALSEKLLLTIRRNGHVYEQTYHMGEPQAPLKQIGDS-NGTGTEVRFWPSAT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++YD L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 60  IFTDTLYHYDILAKRLRELSFLNSGVSIRLEDER--DGREVHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+ Q+       +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHQNVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
            +Y+++   SKK K S   GDD RE   +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 NTYMDREDYSKKAKISAASGDDVREDLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 238 MGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVERARFD+M+SSQE+GTLIT
Sbjct: 298 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVERARFDRMISSQEVGTLIT 357

Query: 480 ALGTGIGQDSFDINK 494
           ALG GIG+D ++ +K
Sbjct: 358 ALGCGIGRDEYNPDK 372


>gi|209863313|gb|ACI88756.1| DNA gyrase subunit B [Aeromonas sp. JH107]
 gi|209863369|gb|ACI88784.1| DNA gyrase subunit B [Aeromonas sp. JH115]
          Length = 365

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 219/368 (59%), Positives = 278/368 (75%), Gaps = 3/368 (0%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P
Sbjct: 60  SDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTP 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + S
Sbjct: 118 IHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNS 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + +
Sbjct: 178 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 237

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP
Sbjct: 238 KLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 297

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 357

Query: 483 TGIGQDSF 490
            GIG+D +
Sbjct: 358 CGIGRDEY 365


>gi|108755446|dbj|BAE95687.1| DNA gyrase B [Segniliparus rotundus DSM 44985]
          Length = 417

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 178/420 (42%), Positives = 250/420 (59%), Gaps = 31/420 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS  L++ I  +G  +  S+       PL   G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSYKLEVEIDVDGFHWSQSYDKAKP-GPLTK-GDPVKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----------- 219
           T V F    +IF    +++DT+  RL+E++FLN  + I+L D R  +             
Sbjct: 59  TTVRFWADPEIFETTHYDFDTIARRLQEMAFLNKGLIITLTDLREGQIDAAEDGEALDTA 118

Query: 220 -----------------EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                                 Y GG+  +V +++R K  +  S +  +G  +   +++A
Sbjct: 119 EVARSEQEAQAQAPAVKRREYHYPGGLHDYVGHINRTKTAVHNSIVSFEGKGEGHEVEIA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+  +++ GDD 
Sbjct: 179 MQWNSGYTESVYTFANTINTHEGGTHEEGFRAALTSTMNKYARDKKILKEKDKNLTGDDV 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+ +P+F  QTK KL ++E+RS V+   N+ L+ W E +P EAK+IV K 
Sbjct: 239 REGLAAVISVKLGEPQFEGQTKTKLGNTEIRSFVQKICNEELTHWFEANPSEAKLIVTKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
             A + R+AAR AR+  RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 QQAYLAREAARSARETVRRKTATDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+ E QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++
Sbjct: 359 RNSEFQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHKIVL 417


>gi|308152505|dbj|BAJ22231.1| DNA gyrase subunit B [Mycobacterium austroafricanum]
          Length = 419

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 182/421 (43%), Positives = 253/421 (60%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I+++G  +  ++   +    L   G    DTGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIRKDGYEWHQTYDRSVP-GTLKQ-GEKSKDTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF   +++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTNYDFETIARRLQEMAFLNKGLTIELTDERVTPADVVDDVVSDHAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K P+  S I   G  +   +++
Sbjct: 120 PKSAEEKAAEAAAPQKVKHRVFHYPGGLVDFVKHINRTKTPIQPSIIDFDGKGEGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ LS W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|187471785|gb|ACD11203.1| DNA gyrase B subunit [Nocardia sp. W8061]
          Length = 415

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 176/418 (42%), Positives = 252/418 (60%), Gaps = 31/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETAE 118

Query: 214 -----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                        P+ +  T  Y GG+E FV +++R K+P+  + +          +++A
Sbjct: 119 APKHDEGTAAAPEPKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVAFTSKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKI 415


>gi|259018114|gb|ACV89649.1| DNA gyrase subunit B [Nocardia takedensis]
          Length = 413

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 174/416 (41%), Positives = 248/416 (59%), Gaps = 30/416 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ L+  +  +G  +   + +      L + G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRLEAEVDTDGYHWTQQYKDAKP-GKL-IQGEATERTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    ++F    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPEVFETTTYNFETVSRRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAE 118

Query: 215 -----------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +  T  Y GG+E FV ++ R K P+  S +   G      +++AM
Sbjct: 119 APKQGDTAAPAEHKVKTRTYHYPGGLEDFVRHITRTKSPIHNSVVGFTGKGTGHELEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKRLLKEKDGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K +
Sbjct: 239 EGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQKTCNEHLTHWFEANPADAKTIVNKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
               QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 DSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 413


>gi|211927093|dbj|BAG82799.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 180/424 (42%), Positives = 255/424 (60%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ L++ I  +G  +E ++        L V G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTILEVEIDNDGYHWEQTYTASKP-GEL-VRGEATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T V F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWPDPEIFETTTFNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTEEDVPDTAD 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +  T  Y GG+E +V +++R K P+  S +          
Sbjct: 119 APKTAEDQAVEAAEPEVHKVKVRTYHYPGGLEDYVRHINRTKTPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ 
Sbjct: 179 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKEKDPNLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ +S W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP K E+++VEGDSAGGS
Sbjct: 299 VTKAVSSAHARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI ++ FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHEE-FDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|68445342|dbj|BAE03172.1| DNA gyrase subunit B [actinobacterium Aac-26]
 gi|68445358|dbj|BAE03180.1| DNA gyrase subunit B [actinobacterium Aac-70]
          Length = 399

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 179/401 (44%), Positives = 257/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS  L + ++ EG+++  +++ G    PL   G A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSMRLTVAVRTEGHLWTQAYLRGAPTAPLTK-GEAVSETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    ++F    +N++TL  R +E++FLN  + I L+D+R     E          
Sbjct: 60  TTVTFWADDEVFETTAYNFETLSRRFQEMAFLNRGLTIELVDERPEYKDEEGNLRSIRYK 119

Query: 225 YKGGIEAFVSYLDRHK-KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV Y++  K + +    I          I+ ++A++WN+ Y E+V  F N I 
Sbjct: 120 YDGGISDFVRYINAAKGELVHAQVIEFGSEDVERRIAAEVALQWNNQYSESVYTFANGIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSALT  +  Y +     K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + ++ W + +P+EAK IV+K + A+  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEARTFVQKITYEAIADWFDRNPIEAKDIVRKSIQAATARIAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKLADC   +P + E+F+VEGDSAGGSAKQGR    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLADCQSTNPAECEIFVVEGDSAGGSAKQGRDPRTQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+ALGTGI  D FDI+KLRYHKI++
Sbjct: 360 KARIDKVLQNTEVQGLISALGTGI-HDDFDISKLRYHKIVL 399


>gi|308152507|dbj|BAJ22232.1| DNA gyrase subunit B [Mycobacterium neoaurum]
          Length = 419

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 177/421 (42%), Positives = 248/421 (58%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I ++G  +  ++   +    L   G     TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIHKDGFEWHQTYDRSVP-GTLRK-GEPSKKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTTYDFETIARRLQEMAFLNKGLTIELTDERVAPEEIVDEVVSDHAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K  +  S I  +G      +++
Sbjct: 120 PKSAEEKAAEHAAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFEGKGPGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L  W + +P EAK +V K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEELQHWFDANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|45736563|dbj|BAD13360.1| DNA gyrase subunit B [Leptospira weilii]
 gi|45736565|dbj|BAD13361.1| DNA gyrase subunit B [Leptospira weilii]
 gi|45736567|dbj|BAD13362.1| DNA gyrase subunit B [Leptospira weilii]
          Length = 391

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 190/393 (48%), Positives = 278/393 (70%), Gaps = 7/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G IY   +  GI  + + + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSSVEIKGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
            F P + IF+  DF +D L  R REL+FLN  + + + D+R              + GGI
Sbjct: 60  RFKPDATIFTTVDFQFDILSARFRELAFLNKGLVLIVEDRRRGSEGENLLRNEFQFSGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL
Sbjct: 120 VSFVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            G R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV
Sbjct: 179 EGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+  
Sbjct: 239 NAEIKGIMQTLSSEGLTLFFEENPSITKKILEKCILSAKAREAARKARDLTRRKTVLEGG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+
Sbjct: 299 GLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 LSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|27530809|dbj|BAC54052.1| DNA gyrase subunit B [Nocardia flavorosea]
          Length = 418

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 180/421 (42%), Positives = 254/421 (60%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I  +G  +  ++ + +    L V G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDTDGYHWSQTYKDAVP-GQL-VQGDATKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F     +F    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPAVFETTTYNFETVSRRLQEMAFLNKGLTIVLTDERVSATEVTDEVVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+E FV +++R K+P+  S +   G      +++
Sbjct: 119 APKHDEGGEKPALEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFNGKGPGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A++WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 ALQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI KLRYHKI+
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGI-HDEFDIAKLRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|68445352|dbj|BAE03177.1| DNA gyrase subunit B [actinobacterium Aac-49]
          Length = 399

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 172/401 (42%), Positives = 252/401 (62%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG SVVNALS+ L + +K +G+++   ++ G+   PL   G A ++TG
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYLRGVPTAPLKK-GEAVSETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    +IF    +N++TL  R +E++FLN  V I LID+R     E          
Sbjct: 60  TTVTFWADDEIFETTTYNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNARQVHYK 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV +      + +    I          IS ++A++WN+ Y E+V  F N I 
Sbjct: 120 YDGGISDFVKHLNAAKGEMVHPQVIEFGAEDKERKISAEVALQWNNQYSESVYTFANVIQ 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSALT  +  Y ++    K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSALTNVVNRYAKEKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + ++ W + +P EA+ I++K + A+  R AAR+AR+L RR
Sbjct: 240 QTKAKLGNTEARTFVQKITYESMADWFDRNPNEARDIIRKSIQAATARIAARKARELPRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKL+DC   +P + E+F+VEGDSAGGSAKQ R    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLSDCQSTNPVECEIFVVEGDSAGGSAKQARDSAVQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI +LGTGI  D+FD+++LRYHKI++
Sbjct: 360 KARIDKILQNTEVQGLIWSLGTGI-HDAFDVSRLRYHKIVL 399


>gi|211927071|dbj|BAG82788.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 419

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 179/421 (42%), Positives = 252/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I ++G+ +  ++   +    L   G   + TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIYKDGHQWFQTYDKSVP-GQLRK-GEPTDKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTTYDFETIARRLQEMAFLNKGLTIELTDERVSSEDVVDDVVSDQAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K P+  S I   G  +   +++
Sbjct: 120 PKSAEEKAAEASAPHKVKHRVFHYPGGLVDFVKHINRTKTPIQPSVIDFDGKGEGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK ++ K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFESNPAEAKTVINK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|324500583|gb|ADY40270.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1514

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 138/695 (19%), Positives = 263/695 (37%), Gaps = 64/695 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES-----------------------GLHHMIYEVLDN 51
            Q    L+ +  RP  YIG  +                          GL+ +  E+L N
Sbjct: 28  YQKKSQLEHILLRPDTYIGSVEYTERAPMWVYDAELERIVQRDITYVPGLYKIFDEILVN 87

Query: 52  AIDESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D        ++I VT++ +    TV +NG+GIP  LHK E +   E+I   L     +
Sbjct: 88  AADNKQRDPKMNVIKVTIDKENCEITVFNNGKGIPVVLHKTEKVFVPELIFGTLLTSSNY 147

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           +    KV+GG +G G  + N  S+   +    K  G  ++ +++N +        G +  
Sbjct: 148 DDTERKVTGGRNGYGAKLCNVFSTRFTIETSSKEYGKSFKQTWVNNMTKEREPEIGKSKG 207

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +  T+VTF P    F + + + D    +  R  +++     V++ L  K+          
Sbjct: 208 EDFTKVTFRPDLAKFRMTELDDDIVALMSRRAFDIAGSTRGVKVFLNHKQ---------L 258

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G + +V    ++       P      + N   ++A+  ++   + V  F N+I    
Sbjct: 259 PVQGFKQYVEQYVKYNVNAQGEPYGFIYEQVNNRWEVALTVSERGFQQV-SFANSIATTK 317

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   +T ++   ++K    K    +V     R      ++  + +P F SQ+K
Sbjct: 318 GGRHVDYIVDQVTAKLIDIIKK-KVGKSGGINVKPFQVRNHMWVFVNALIENPTFDSQSK 376

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E +         +  ++D       +       IV+ V+     +      +  + +K  
Sbjct: 377 ETMTLQAKSFGSKCELSDKFIQSTMKCG-----IVEAVMAWVRFKQQESLDKKCSSKKTS 431

Query: 405 LDIASLP-GKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKIL 458
                       D   ++     L L EGDSA      G    GR R    + PLRGK+L
Sbjct: 432 KLKGVPKLEDANDAGTKNSSHCTLILTEGDSAKSLAVSGLGVVGRDR--YGVFPLRGKML 489

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIG---QDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           NV      +++ + EI  L+  +G       ++  D+  LRY K+++M D D DG+HI+ 
Sbjct: 490 NVREGNHKQIMENVEINALLKIIGLQYRLKYENDDDMKTLRYGKVMVMADQDQDGSHIKG 549

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIEL 574
           L++ F     P+LI   F+     P+   T+GK            ++  N ++       
Sbjct: 550 LVINFIHFNWPALIRRNFVEEFITPIVKATKGKEEFSFFSLPEYAEWRNNTENWKSYRIK 609

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  +  + + +  D  +     +    +      +   +   F+ +  ++    L
Sbjct: 610 YYKGLGTSTSKEAKEYFTDMARHRIRFRYGGQD------DDMSLDMAFSKKRIEDRKTWL 663

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
            S +A R N   +   + +    +   +  K    
Sbjct: 664 TSWMAERKNRREQGLTEEYLYDKDTHTVSFKDFVN 698


>gi|308152485|dbj|BAJ22221.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153174|dbj|BAJ22176.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 418

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 176/421 (41%), Positives = 254/421 (60%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IK +G  ++ ++ +      L V G    +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKP-GEL-VQGDPTKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
           T V+F    +IF    +N++T+  RL+E++FLN  + I+L D+R+               
Sbjct: 59  TTVSFWADPEIFETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPK 118

Query: 217 ---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+E +V ++++ K P+  S +          +++
Sbjct: 119 SAAEEAEEAAQAAPRKSKTRVYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K     + GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI+
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|19912061|dbj|BAB88342.1| DNA gyrase subunit B [Cytophaga sp. I-602]
 gi|19912065|dbj|BAB88344.1| DNA gyrase subunit B [Cytophaga sp. I-105]
 gi|19912067|dbj|BAB88345.1| DNA gyrase subunit B [Cytophaga sp. I-689]
          Length = 391

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 177/392 (45%), Positives = 251/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G     +GT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVYREGKIWEQEYSRGKAQYPVKSIGETE-LSGTVVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
           +P   IF+    ++Y+TL +R+REL++LN  + I + DKR+     E    T   + G++
Sbjct: 60  IPDDTIFTQTTEYSYETLSNRMRELAYLNKGITIVITDKRNKDEKGEFISETFHSQEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD  ++PL+ + I ++G ++ I +++AM +N G+ EN+  + NNI   +GGTHLS
Sbjct: 120 EFIKFLDATREPLINTVISMEGEKNGIPVEVAMIYNTGFSENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEEHP +AK IV+KV  A+  R AA +AR++ +RK  +    L
Sbjct: 240 EVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMGGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCS++DP+  E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSDQDPENCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|211927041|dbj|BAG82773.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927083|dbj|BAG82794.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927085|dbj|BAG82795.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308152439|dbj|BAJ22198.1| DNA gyrase subunit B [Rhodococcus globerulus]
 gi|308152441|dbj|BAJ22199.1| DNA gyrase subunit B [Rhodococcus globerulus]
 gi|308152445|dbj|BAJ22201.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152447|dbj|BAJ22202.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152453|dbj|BAJ22205.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152455|dbj|BAJ22206.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152459|dbj|BAJ22208.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152461|dbj|BAJ22209.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152475|dbj|BAJ22216.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308152517|dbj|BAJ22237.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153136|dbj|BAJ22157.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153138|dbj|BAJ22158.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153140|dbj|BAJ22159.1| DNA gyrase subunit B [Rhodococcus sp.]
 gi|308153206|dbj|BAJ22192.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153208|dbj|BAJ22193.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153210|dbj|BAJ22194.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153212|dbj|BAJ22195.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 418

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 176/421 (41%), Positives = 254/421 (60%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IK +G  ++ ++ +      L V G    +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKP-GEL-VQGDPTKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
           T V+F    +IF    +N++T+  RL+E++FLN  + I+L D+R+               
Sbjct: 59  TTVSFWADPEIFETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPK 118

Query: 217 ---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+E +V ++++ K P+  S +          +++
Sbjct: 119 SAAEEAEEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K     + GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI+
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|327200337|gb|AEA36048.1| DNA gyrase subunit B [Agrobacterium sp. 81K]
          Length = 358

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 244/358 (68%), Positives = 299/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G I+E+SF +G+ D PL + G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGDYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S++ F++ ++ Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+ AFV Y
Sbjct: 61  LASTETFTMTEYTYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEEMLYDGGLAAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I G +D I++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVDKPVYIIGEKDGITVEVAMWWNDTYHENMLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY + S  +K++K S+ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ VN+ LS W EEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 241 VENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALDISSLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|308224980|gb|ADO24082.1| DNA gyrase beta subunit [Nocardia sp. W8474]
          Length = 415

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 181/418 (43%), Positives = 254/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS L+  +  +G  +   + +      L V G +   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRLEAEVDHDGYHWTQEYKDSKP-GKL-VQGESTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWPDPEIFETTTFNFETVARRLQEMAFLNRGLTITLTDERVSGSEVTDEVVSDTAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                         P+ +  T  Y GG+E FV +L+R K+P+  S +   G      +++
Sbjct: 119 APKHLDENAPVAEEPKVKVRTYHYPGGLEDFVKHLNRTKQPIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|187471787|gb|ACD11204.1| DNA gyrase B subunit [Nocardia sp. W9013]
          Length = 416

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 176/419 (42%), Positives = 253/419 (60%), Gaps = 31/419 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETAE 118

Query: 214 -----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                        P+ +  T  Y GG+E FV +++R K+P+  + +          +++A
Sbjct: 119 APKHDEGTAAAPEPKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVAFTRRGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI+
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIV 416


>gi|51571547|emb|CAH18940.1| gyrase B [Corallococcus coralloides]
          Length = 370

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 195/373 (52%), Positives = 264/373 (70%), Gaps = 3/373 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+R++R G ++E S+  G+ +      G   +  GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVFEQSYARGVSNGSPQEVG-TTDKRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P   +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  TIHFKPDPTVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTG 484
            EI TLITALGTG
Sbjct: 358 AEIVTLITALGTG 370


>gi|282160683|gb|ACL13034.2| DNA gyrase subunit B [Lactobacillus iners DSM 13335]
          Length = 390

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 186/391 (47%), Positives = 265/391 (67%), Gaps = 3/391 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEV 173
           KVSGGLHGVG SVVNALS+ L + + R+G  Y + F +G ++  +   G       GT V
Sbjct: 1   KVSGGLHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIV 60

Query: 174 TFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  DIF+      D  L++R+REL+FLN  ++++  DKR     +    ++GGI+ +
Sbjct: 61  RFYPDPDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKNTAEKDIYHFEGGIKEY 120

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           VS+L++ ++ L + P+ ++G  D I+++ ++++  GY   +L F NNI   +GG H SG 
Sbjct: 121 VSFLNQKEQVLFEPPVYVEGDYDGINVEASLQYITGYKSTLLTFANNIHTYEGGMHESGF 180

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ALTR +  Y  K+   K +  ++ G+D REG T+V+SIK P+P+F  QTK KL +S+ 
Sbjct: 181 KTALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDA 240

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+ V+   +D  S +L E+P   + IV+K   A+  R AA+RAR++TR+K  L+IA+LPG
Sbjct: 241 RAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIANLPG 300

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLAD +  DPK SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++Q
Sbjct: 301 KLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQ 360

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
           EI T+ TALGTG G D FDINK RYHK+IIM
Sbjct: 361 EIRTIFTALGTGFGAD-FDINKARYHKLIIM 390


>gi|20387222|dbj|BAB91311.1| gyrase B [Streptomyces stramineus]
          Length = 399

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 180/401 (44%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + ++ +G  +   +  G+   PL     A ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGYRWTQDYKLGVPTAPLAQ-HEATDEHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLVVDYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSLEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y  +    ++   ++ G+D REG T+++SIK+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYAREKKLLREKDDNLTGEDIREGLTAIISIKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+   ++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 KARIDKILQNTEVQALISAFGTGVHED-FDIAKLRYHKIIL 399


>gi|211927079|dbj|BAG82792.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 418

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 175/421 (41%), Positives = 253/421 (60%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I  +G  +  ++ +      L + G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSKLEAEIDTDGYHWAQTYKDAKP-GKL-IQGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDQRVSESDVTDEVVSDTAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+  FV +++R K+ +  S +   G      +++
Sbjct: 119 APKHAEEGVEKPVEHKVKTRTYHYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRY+KII
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYNKII 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|159484508|ref|XP_001700298.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
 gi|158272465|gb|EDO98265.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
          Length = 1167

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 145/710 (20%), Positives = 257/710 (36%), Gaps = 90/710 (12%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT--------------------DGESGLHHMIYEVLDN 51
            +  Q    L+ +  RP  YIG T                        GL+ +  E+L N
Sbjct: 20  EEMYQKKTQLEHIILRPDTYIGSTERQPNHVWVHTGQKMEYKQVSYPPGLYKIFDEILVN 79

Query: 52  AIDESLEGYA-DIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D  +     D I V ++    S  V +NG+GIP D+HKEEG+   E+I   L     +
Sbjct: 80  AADNKVRDATMDTIKVDIDAATNSIRVWNNGKGIPVDVHKEEGVYVPELIFGHLLTSSNY 139

Query: 110 NQKSYK---------------VSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFI 151
           N    K               ++GG +G G  + N  S+   +    +G     Y+ +F 
Sbjct: 140 NDSEKKALTVHTNIPYAPPPQITGGRNGYGAKLANIFSTEFIIETC-DGSRLKRYKQTFT 198

Query: 152 NGI-LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLREL-SFLNSSV 206
             + +     +T    +D  T +TF P    F ++  + D +   + R+ ++   L    
Sbjct: 199 KNMQVKGTPKITDCKASDNWTSITFKPDLARFGMEALDEDVVSLLRRRVYDMAGVLGKGA 258

Query: 207 QISLIDKR-SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           ++    +R S +  +  +    G +  V                    R N   ++ +  
Sbjct: 259 KVYYNGERLSIKSFQEYVDMYLGPKNGVPRFC---------------ERINDRWEVCISI 303

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
            DG  + V  F N+I  + GGTH+  + +   + +    EK         ++     +  
Sbjct: 304 TDGSFQQV-SFVNSISTQKGGTHVDYIVN---QVVKHATEKLSKKTTKTAAIKPAMVKNH 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               L+  + +P F SQTKE L           F +           +    +   ++  
Sbjct: 360 LWVFLNCYVENPAFDSQTKETLTLRATA-----FGSKCELPVPLLDKVLKAGLSDSIIRF 414

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS- 444
           +  +      +    ++  L   +      D      ++  L L EGDSA   A  G   
Sbjct: 415 AEFKSQKELKKGDGTKRSRLHGITKLDDANDAGGPRSRECTLILTEGDSAKALAISGLGV 474

Query: 445 --RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
             R++  + PLRGK+LNV  A   ++ ++ EI  +   +G   G+   +   LRY  ++I
Sbjct: 475 VGRDHYGVFPLRGKLLNVREASAAQIAANAEIQNIKQIMGLQHGKVYENTTSLRYGHLMI 534

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ L++ F     PSL+   GFL     P+    RG+  +        E 
Sbjct: 535 MTDQDHDGSHIKGLIMNFLHSFFPSLLRIPGFLLEFITPIVKARRGRDTKVFYTMPEYEA 594

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           +  +   +         KG+ +            +  +       +  +   E       
Sbjct: 595 WKESLGNATTAWDIKYYKGLGTSTK--------EEAQEYFSRLDLHRKEFVWEGDEDGDS 646

Query: 622 FNCESDQEINVSLASKLAN-----RLNFIAEKSEKSWHGSINNSDILVKR 666
                 ++        L+N      L+  A++   S+   IN   IL  R
Sbjct: 647 IELAFSKKRVDDRKEWLSNFVPGTFLDQSADRI--SYSDFINRELILFSR 694


>gi|6729233|dbj|BAA89738.1| DNA gyrase subunit B [Mycobacterium simiae]
          Length = 421

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 183/422 (43%), Positives = 253/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ +KR+G  +   +   +    L   G A   TG
Sbjct: 3   NSGYTVSGGLHGVGVSVVNALSTRLEVNVKRDGYEWFQYYDRAVP-GTLKQ-GEATKKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPEIFETTQYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+ QS I   G      ++
Sbjct: 121 APKSAEEQAAESAKPHKVKHRTFHYPGGLVDFVKHINRTKNPIQQSVIDFDGKGTGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|195580167|ref|XP_002079927.1| Top2 [Drosophila simulans]
 gi|194191936|gb|EDX05512.1| Top2 [Drosophila simulans]
          Length = 1133

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 133/744 (17%), Positives = 260/744 (34%), Gaps = 75/744 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG  +                         GL+ +  E+L NA
Sbjct: 14  YQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLYKIFDEILVNA 73

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + I + ++ +    +V +NG+GIP  +HKE+ +    +I   L     +N
Sbjct: 74  ADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMHKEQKMYVPTMIFGHLLTSSNYN 133

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRI----KREGNIYEMSFINGILDNPLVVTGSAG 166
               KV+GG +G G  + N  S+   +       R    ++ ++ N +     V      
Sbjct: 134 DDEKKVTGGRNGYGAKLCNIFSTSFTVETATKEYR--KSFKQTWGNNMGKASDVQIKDFN 191

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
               T +TF P    F +   + D    +  R  +++  +  V + L   +         
Sbjct: 192 GTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVSVFLNGNKLAVRNFKDY 251

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
                    +   D    P ++    +   R  ++   + R         + F N+I   
Sbjct: 252 IDL-----HIKSTDDDSGPPIKIVHEVANERWEVACCPSDR-----GFQQVSFVNSIATY 301

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG H+  +   L +Q+   ++K     K   ++     R      ++  + +P F SQT
Sbjct: 302 KGGRHVDHVVDNLIKQLLEVLKKKN---KGGINIKPFQVRNHLWVFVNCLIENPTFDSQT 358

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE +   +     +  ++D     + +       IV+ VL  +  +     A+   R+  
Sbjct: 359 KENMTLQQKGFGSKCTLSDKFINNMSKSG-----IVESVLAWAKFKAQNDIAKTGGRKSS 413

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNV 460
            +          +   ++     L L EGDSA   A  G     R+   + PLRGK+LNV
Sbjct: 414 KIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRDLYGVFPLRGKLLNV 473

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLL 517
             A + ++  + E+  L   +G    +     +    LRY K++IMTD D DG+HI+ LL
Sbjct: 474 REANYKQLSENAEVNNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLL 533

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           + F     P L+   FL     P+   T+ K           E++  + +      +   
Sbjct: 534 INFIHTNWPELLRLPFLEEFITPIVKATKKKEELSFYSLPEFEEWKNDTANHHTYNIKYY 593

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                S          + +  +  +D   +      + +V          ++   S    
Sbjct: 594 KGLGTS---------TSKEAKEYFQDMQRHRILFKYDGSVDDESIIMAFSKKHIESRKVW 644

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697
           L N ++ +  + E            L  +  + +     +    +    +  +R   + +
Sbjct: 645 LTNHMDEVKRRKELGL-----PERYLYTKGTKSITYADFINLELVLFSNADNERSIPSLV 699

Query: 698 EENYLTILSLI----CNGDKIKIT 717
           +        ++       DK ++ 
Sbjct: 700 DGLKPGQRKVMFTCFKRNDKREVK 723


>gi|20387144|dbj|BAB91272.1| gyrase B [Streptomyces netropsis]
 gi|20387224|dbj|BAB91312.1| gyrase B [Streptomyces syringium]
 gi|308152549|dbj|BAJ22253.1| DNA gyrase subunit B [Streptomyces netropsis]
 gi|308152567|dbj|BAJ22262.1| DNA gyrase subunit B [Streptomyces syringium]
          Length = 399

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 181/401 (45%), Positives = 259/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAQ-HEATDEHG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           T VTF    DIF   +++++TL  R +E++FLN  ++ISL D          +P  +   
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLRISLTDTRADHVDEEGKPLAVDYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSLEIAMQWNSQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y  +    ++   ++ G+D REG T+++SIK+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLINRYAREKKLLREKDDNLTGEDIREGLTAIISIKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+   ++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE
Sbjct: 300 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARIDKILQNTEVQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|261343278|gb|ACX70140.1| DNA gyrase subunit B [Nocardia carnea]
          Length = 415

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 180/418 (43%), Positives = 250/418 (59%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  +  +G  +  ++ + +   PL V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQTYKDAVP-GPL-VQGEPTKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F     IF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPAIFETTTYNFETISRRLQEMAFLNKGLTIVLTDERVSATEVTDEMVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+E FV +++R K+P+  S +   G      +++
Sbjct: 119 APKHDEGGEKPAVEHKVKARTYHYPGGLEDFVRHINRTKQPIHNSAVSFNGKGPGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K    ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGI-HDEFDIAKLRYHK 415


>gi|308224982|gb|ADO24083.1| DNA gyrase beta subunit [Nocardia sp. W9330]
          Length = 415

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 182/418 (43%), Positives = 254/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS L+  I  +G  +   + +      L V G +   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRLEAEIDHDGYHWTQEYKDSKP-GKL-VQGESTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWPDPEIFETTTFNFETVARRLQEMAFLNRGLTITLTDERVSGSEVTDEVVSDTAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                         P+ +  T  Y GG+E FV +L+R K+P+  S +   G      +++
Sbjct: 119 APKHLDENAPVAEEPKVKVRTYHYPGGLEDFVKHLNRTKQPIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|270057067|gb|ACZ59655.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 357

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 211/359 (58%), Positives = 272/359 (75%), Gaps = 2/359 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K
Sbjct: 61  IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 119 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 179 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 239 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 357


>gi|324500590|gb|ADY40273.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1560

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 138/695 (19%), Positives = 263/695 (37%), Gaps = 64/695 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES-----------------------GLHHMIYEVLDN 51
            Q    L+ +  RP  YIG  +                          GL+ +  E+L N
Sbjct: 28  YQKKSQLEHILLRPDTYIGSVEYTERAPMWVYDAELERIVQRDITYVPGLYKIFDEILVN 87

Query: 52  AIDESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D        ++I VT++ +    TV +NG+GIP  LHK E +   E+I   L     +
Sbjct: 88  AADNKQRDPKMNVIKVTIDKENCEITVFNNGKGIPVVLHKTEKVFVPELIFGTLLTSSNY 147

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           +    KV+GG +G G  + N  S+   +    K  G  ++ +++N +        G +  
Sbjct: 148 DDTERKVTGGRNGYGAKLCNVFSTRFTIETSSKEYGKSFKQTWVNNMTKEREPEIGKSKG 207

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +  T+VTF P    F + + + D    +  R  +++     V++ L  K+          
Sbjct: 208 EDFTKVTFRPDLAKFRMTELDDDIVALMSRRAFDIAGSTRGVKVFLNHKQ---------L 258

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G + +V    ++       P      + N   ++A+  ++   + V  F N+I    
Sbjct: 259 PVQGFKQYVEQYVKYNVNAQGEPYGFIYEQVNDRWEVALTVSERGFQQV-SFANSIATTK 317

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   +T ++   ++K    K    +V     R      ++  + +P F SQ+K
Sbjct: 318 GGRHVDYIVDQVTAKLIDIIKK-KVGKSGGINVKPFQVRNHMWVFVNALIENPTFDSQSK 376

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E +         +  ++D       +       IV+ V+     +      +  + +K  
Sbjct: 377 ETMTLQAKSFGSKCELSDKFIQSTMKCG-----IVEAVMAWVRFKQQESLDKKCSSKKTS 431

Query: 405 LDIASLP-GKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKIL 458
                       D   ++     L L EGDSA      G    GR R    + PLRGK+L
Sbjct: 432 KLKGVPKLEDANDAGTKNSSHCTLILTEGDSAKSLAVSGLGVVGRDR--YGVFPLRGKML 489

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIG---QDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           NV      +++ + EI  L+  +G       ++  D+  LRY K+++M D D DG+HI+ 
Sbjct: 490 NVREGNHKQIMENVEINALLKIIGLQYRLKYENDDDMKTLRYGKVMVMADQDQDGSHIKG 549

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIEL 574
           L++ F     P+LI   F+     P+   T+GK            ++  N ++       
Sbjct: 550 LVINFIHFNWPALIRRNFVEEFITPIVKATKGKEEFSFFSLPEYAEWRNNTENWKSYRIK 609

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  +  + + +  D  +     +    +      +   +   F+ +  ++    L
Sbjct: 610 YYKGLGTSTSKEAKEYFTDMARHRIRFRYGGQD------DDMSLDMAFSKKRIEDRKTWL 663

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
            S +A R N   +   + +    +   +  K    
Sbjct: 664 TSWMAERKNRREQGLTEEYLYDKDTHTVSFKDFVN 698


>gi|115500938|dbj|BAF34139.1| B subunit gyrase [Pseudomonas indica]
          Length = 374

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 212/377 (56%), Positives = 283/377 (75%), Gaps = 3/377 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +V GGLHGV VSVVNALS  L+L I+R G ++E  + +G+   PL   G   + TGTE+ 
Sbjct: 1   RVYGGLHGVRVSVVNALSEELRLTIRRSGKVWEQIYRHGVPQAPLAPVGDT-DGTGTEIH 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F  S++ F+   F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV 
Sbjct: 60  FKASAETFTNIHFSWDILAKRLRELSFLNSGVGIVLRDERSGKE--ELFKYEGGLKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RS
Sbjct: 118 YLNTNKTAVNQVFHFNVQRDDCIGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 ALTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 AVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALGTGIGQDSFD 491
           GTLITALG GIG+  ++
Sbjct: 358 GTLITALGCGIGRKEYN 374


>gi|45736561|dbj|BAD13359.1| DNA gyrase subunit B [Leptospira santarosai]
          Length = 391

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 189/393 (48%), Positives = 276/393 (70%), Gaps = 7/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGESS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL----IDKRSPEPREITMFYKGGI 229
            F P + IF+  DF +D L  R REL+FLN  + + +      +           + GGI
Sbjct: 60  RFKPDASIFTTVDFQFDILSARFRELAFLNKGLVLIVEDRRRSREGENLLRNEFQFSGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +++ +K P+    I  + ++D+   ++++++++ Y EN+ CFTNNI    GGTHL
Sbjct: 120 VSFVEHINENKHPMH-KVIHFERNKDDALAEISIQYSETYTENIFCFTNNINNNLGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            G R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV
Sbjct: 179 EGFRAALTRTLNDFLKKDTALSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+  
Sbjct: 239 NAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCSE+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+
Sbjct: 299 GLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNIQAILPLKGKILNVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 LSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|224106109|ref|XP_002314046.1| predicted protein [Populus trichocarpa]
 gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa]
          Length = 1482

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 133/702 (18%), Positives = 248/702 (35%), Gaps = 74/702 (10%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGD--------------------TDGESGLH 42
           +     +Y     Q    L+ +  RP  YIG                          GL+
Sbjct: 21  EKTIEETY-----QKKSQLEHILLRPDTYIGSIEKHAQILWVFENDKMVHRSVTYVPGLY 75

Query: 43  HMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
            +  E+L NA D        D + V ++  +   +V +NG G+P D+HKEEG+   E+I 
Sbjct: 76  KIFDEILVNAADNKQRDPKMDSLKVVIDVENNLVSVYNNGDGVPVDIHKEEGVYVPELIF 135

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-LD 156
             L     ++    K +GG +G G  + N  S+   +    +G     Y+  F N +   
Sbjct: 136 GHLLTSSNYDDTMKKTTGGRNGYGAKLTNIFSTEFVIETA-DGKRKKKYKQVFSNNMGKR 194

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           +  ++T    ++  T+VTF P    FS+     D +    + +  +   +  ++  + + 
Sbjct: 195 SEPIITKCKESENWTKVTFKPDLAKFSMTHLEEDVVALMKKRVVDMAGCLGKTVKVELNG 254

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
               +        + +V+              +    +     ++ +   +G       F
Sbjct: 255 SRVPV-----KSFQDYVNMYLNSAAESGSERPKCFYDKVGERWEVCVSLTEG-QFQQASF 308

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N+I    GGTH+  + + +T  + + V K         ++   + +      ++  + +
Sbjct: 309 VNSIATIKGGTHVDYVTNQITNYVMNAVNKK----HKNGNIKAHNVKNYLWVFVNCLIDN 364

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-IVKKVLDASMVRDAARRA 395
           P F SQTK      E  ++ +S          +     AK  IV  +L  +  ++     
Sbjct: 365 PAFDSQTK------ETLTLRQSSFGSKCELSEDFLKKVAKSDIVDNLLSWAKFKENKELK 418

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG------RSRENQA 449
           +    +   +++        +   R  +K  L L EGDSA   A  G        R    
Sbjct: 419 KTDGTKTAKVNVP-KLEDANEAGGRYSEKCTLILTEGDSAKALAIAGVAGLSQMERNFYG 477

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           + PLRGK+LNV  A   ++  ++EI ++   LG    +   ++  LRY  ++IMTD D D
Sbjct: 478 VFPLRGKLLNVREATSKQLKENKEIESIKKILGLQHDKQYINVKSLRYGHLMIMTDQDHD 537

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGI-TRGKSLQYVKDEESLEDYLINQS 567
           G+HI+ LL+ F     PSL+      +    P+     R  ++         E +     
Sbjct: 538 GSHIKGLLINFIHSFWPSLLKVPSFLVEFITPIVKATHRNGTVLSFYSMPEYESW----- 592

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
                      K  +S N     I     +         ++ K   +        +    
Sbjct: 593 -----------KESLSGNASGWSIKYYKGLGTSTSKEGKDYFKNLHKHKKDFLWMDELDG 641

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
             I ++ + K          + E   H   N   I       
Sbjct: 642 DAIELAFSKKKIEARKNWLRQHEPGTHLDHNQKIIKYSDFIN 683


>gi|157280824|gb|ABV29333.1| gyrase subunit B [Streptomyces sp. AB2A]
          Length = 399

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 186/401 (46%), Positives = 258/401 (64%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALSS + +  + +G  +   +  G    PL     A  +TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSSKVSVEDQTDGFRWTQDYKTGAPTAPLAR-NEATEETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           T VTF    D+F   +++++TL  R +E++FLN  + ISL D+R        +P  +   
Sbjct: 60  TTVTFWADPDVFETTEYSFETLARRFQEMAFLNKGLSISLTDERAAHVDEEGKPLSVKYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV+Y   R  + +  + I  +       +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGIVDFVTYLNSRKGELVHPTVIGFEAEDKERMLSLEIAMQWNAQYTEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ G+D REG T ++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTYLINKYARDKKLLRERDDNLTGEDIREGLTXIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E ++ V+  VN+ L+ WL+ +P EA  IV+K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAKTFVQKIVNEHLADWLDRNPNEAADIVRKGIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +QEI  LI+A GTG+ +D FDI+KLRYHKII+
Sbjct: 360 KARVDKILQNQEIQALISAFGTGVHED-FDISKLRYHKIIL 399


>gi|51571595|emb|CAH18964.1| gyrase B [Corallococcus coralloides]
          Length = 370

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 198/373 (53%), Positives = 264/373 (70%), Gaps = 3/373 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+RI+R G +YE S+  G+ +      G   +  GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVSNGSPQEVG-TTDKRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  MIHFKPDSQVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVFIKTEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+ +LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLATFLEENPPLAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTG 484
            EI TLITALGTG
Sbjct: 358 AEIVTLITALGTG 370


>gi|197295754|gb|ACH58588.1| gyrase subunit B [Methylobacterium organophilum]
          Length = 382

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 231/382 (60%), Positives = 290/382 (75%), Gaps = 7/382 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSSWL+LRI R    + M F +G    PL V G      GTEVTFLPS++ 
Sbjct: 1   GVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVIGPGNGRRGTEVTFLPSTET 60

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y+GGIEAFV YLDR +K
Sbjct: 61  FTMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYEGGIEAFVRYLDRSRK 120

Query: 242 PL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           P+  M SP+ +   RD I +++A  WND ++E VL FTNNIPQ+DGGTH++G R+ALTRQ
Sbjct: 121 PIDGMTSPVVVSSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAALTRQ 180

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +T Y E S  +KK+K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  VE+ 
Sbjct: 181 VTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPAVENV 240

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+GLS WLEE+P +A+ ++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLADC E
Sbjct: 241 LNEGLSTWLEENPSQARSVMGKVVLAASAREAARKARETVTRKGALDIASLPGKLADCQE 300

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           RDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS EIGTLIT
Sbjct: 301 RDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIGTLIT 360

Query: 480 ALGTGIGQDS-----FDINKLR 496
           ALG GIG+ S     F+  KLR
Sbjct: 361 ALGAGIGRSSTDREGFNPEKLR 382


>gi|259018116|gb|ACV89650.1| DNA gyrase subunit B [Nocardia shimofusensis]
          Length = 414

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 178/417 (42%), Positives = 252/417 (60%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS +++ I  +G  +  ++ +      L V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKDSKP-GKL-VQGEPTGRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPEIFETTTFNFETVARRLQEMAFLNKGLTITLTDERVSDTDITDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+ +  S +   G      +++A
Sbjct: 119 APKPGESAEKPVEHKVKARTYHYPGGLEDFVRHINRTKQSIHNSVVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+ + ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKIAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 414


>gi|119226180|dbj|BAF41069.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 181/424 (42%), Positives = 253/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFQWNQTYTDLKP-GEL-VKGEATKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T  TF    +IF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTATFWADPNIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVAD 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +     Y GG+E +V +++R K+P+  S +          
Sbjct: 119 APKTAEDESAEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|189182406|gb|ACD81922.1| DNA gyrase subunit beta [Shewanella vesiculosa]
          Length = 365

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 215/368 (58%), Positives = 282/368 (76%), Gaps = 4/368 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+R G +YE  + +G+ D P+   G A   TGTE+ F PSS 
Sbjct: 1   HGVGVSVVNALSEKLQLTIRRAGKVYEQFYTHGVPDAPIKEIGDA-VKTGTELRFWPSSQ 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K
Sbjct: 60  TFTDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKD--EFFKYEGGISAFVDYLNRNK 117

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G R ALTR 
Sbjct: 118 TPINKDVFHFSQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRGALTRN 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E+   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  
Sbjct: 178 LNNYMEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQT 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E
Sbjct: 238 MGEQLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 298 KDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 357

Query: 480 ALGTGIGQ 487
           ALG GIG+
Sbjct: 358 ALGCGIGR 365


>gi|327200343|gb|AEA36051.1| DNA gyrase subunit B [Agrobacterium rubi]
          Length = 358

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 243/358 (67%), Positives = 298/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G I+E+SF +G+ D PL + G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S++ F++ ++ Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+ AFV Y
Sbjct: 61  LASTETFTMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIKQEEMLYDGGLAAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I G +D I++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRSKKPLVDKPVYIIGEKDGITVEVAMWWNDTYHENMLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY + S  +K++K S+ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ VN+ LS W EEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 241 VENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALDISSLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+ LVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVLLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|4996834|dbj|BAA78462.1| subunit B protein of DNA gyrase [bacterium rA10]
          Length = 301

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 142/300 (47%), Positives = 193/300 (64%), Gaps = 32/300 (10%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKE 90
              +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V+DNGRGIPT     D H E
Sbjct: 1   SDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSVSVTDNGRGIPTGVKMDDKH-E 59

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
              SA+E+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++REG ++ + F
Sbjct: 60  PKRSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRREGKVHVLEF 119

Query: 151 IN------------GILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLR 197
                         G+  +P+ VTG   +  GTEV FLP +DIF    DF+Y+ L  RLR
Sbjct: 120 SRGFVQNRLIETVDGVEVSPMKVTGDT-DKRGTEVHFLPDTDIFKENSDFHYEILAKRLR 178

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-- 255
           ELSFLN+ V+I L D+R+ +         GG+  FV ++++ K  L        G R   
Sbjct: 179 ELSFLNNGVRIRLKDERTGKE--DDFSGAGGVRGFVEFINKGKTVLHPHSFYAAGERPAE 236

Query: 256 --------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                   +I +++AM+WN GY E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y++++
Sbjct: 237 TYGGIPGTHIGVEVAMQWNSGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDEN 296


>gi|308153076|dbj|BAJ22127.1| DNA gyrase subunit B [Micrococcus luteus]
          Length = 430

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 182/432 (42%), Positives = 262/432 (60%), Gaps = 42/432 (9%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDT 169
              Y VSGGLHGVG+SVVNALS  +   ++R+G+++ MSF +G +    L V G A + T
Sbjct: 1   GGGYAVSGGLHGVGISVVNALSRRVDTEVRRQGHVWRMSFADGGVPQGEL-VKGEATDAT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI-------- 221
           GT  TF P  +IF   +F+Y+TL+ R ++++FLN  ++I+L D+R  E  E+        
Sbjct: 60  GTVQTFYPDPEIFDSIEFDYETLRARFQQMAFLNRGLRITLTDERVQESNEVVDDEIAGE 119

Query: 222 -------------------------TMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGSR 254
                                    T  Y+ G+  +V +L+  +  + +    I  +   
Sbjct: 120 GAAGEDVAENGLAEDAEQEPQRRSVTYLYENGLLDYVQHLNSAKKVEYVHDDVIAFEAED 179

Query: 255 ----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
                ++++++AM+W   Y E+V  + N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 180 VSDGRSMAVEVAMQWTSAYSESVHTYANTINTHEGGTHEEGFRAALTSLVNRYAREKEVL 239

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K  + ++ G+D REG T+V+S+K+ +P+F  QTK KL +SE R  V   V D L  W E 
Sbjct: 240 KPKEDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNSEARGFVSKAVTDHLGDWFER 299

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P  AK I++K + AS  R AAR+ARD  RRK  L+   +PGKLADCS +DP++ E+++V
Sbjct: 300 NPGPAKEIIRKAIMASHARLAARKARDNARRKSPLESFGMPGKLADCSSKDPERCEVYIV 359

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAKQGR+ E QAILPLRGKILNVERAR DK L + EI ++ITA GT IG++ F
Sbjct: 360 EGDSAGGSAKQGRNPETQAILPLRGKILNVERARLDKALGNAEIQSMITAFGTNIGEE-F 418

Query: 491 DINKLRYHKIII 502
           DI+KLRYHKI++
Sbjct: 419 DISKLRYHKIVL 430


>gi|308152513|dbj|BAJ22235.1| DNA gyrase subunit B [Mycobacterium chubuense]
          Length = 419

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 177/421 (42%), Positives = 250/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  ++++G  +  ++   +    L   G     TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADVRKDGYEWFQTYDRSVP-GTLRK-GEKTKGTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF   +++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTNYDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K  +  S I   G      +++
Sbjct: 120 PKSAEEKAAEQSAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGPGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD++KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLSKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|300176867|emb|CBK25436.2| unnamed protein product [Blastocystis hominis]
          Length = 1573

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 137/594 (23%), Positives = 240/594 (40%), Gaps = 64/594 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
            +  Q L   + V KRP MYIG  D  +                      G + +  E+L
Sbjct: 44  EEKYQKLDPREHVLKRPDMYIGSVDKVTQEMWVYDREKKGLVYRNITYVPGFYKIFDEIL 103

Query: 50  DNAIDESLEGYAD----IITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
            NA D     + D     I V ++ D G  TV +NG+GIP  +HKEE +    +I   L 
Sbjct: 104 VNAAD---NKHNDPTMDTIRVDIDRDQGRITVWNNGKGIPVVIHKEEKVYVPSLIFGLLL 160

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVT 162
            GG F+    KV+GG +G+G  + N  S    +    K+EG  ++  + + +      V 
Sbjct: 161 TGGNFDDNEKKVTGGRNGLGAKLTNIYSLEFSVETADKKEGKEFKQVWFDNMSRCNDPVI 220

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSV-QISLIDKRSPEP 218
                   T+++++P   +F +   + DT   L+ R+ +++ +  S  ++ L  +R    
Sbjct: 221 KKYRGKEYTKISYVPDLKLFQMDSIDDDTLGLLEKRVYDIAGVTDSSLKVYLNGERLNVK 280

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
              +                 +    +      G R  + + ++    DG+ + V  F N
Sbjct: 281 NFESYIKMY------QNEGATETKENKVVYCNAGERWEVGVGVS----DGHFQQV-SFVN 329

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           +I    GG H+  +   ++  +          KK K+ +     ++     ++ K+ +P 
Sbjct: 330 SICTSKGGKHVDYIAQKVSDYLLPV-----FKKKLKKDIKLTMVKQYLYIFVNCKIENPT 384

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F SQ+KE L            +++     +E+       IV  V   S  ++     +  
Sbjct: 385 FDSQSKETLTKVSKGWGSLPVLSEQFLKKVEKCG-----IVDAVSVFSRFKEDQMLKKQS 439

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPL 453
            ++                  R  K   L + EGDSA     GG +  GR      + PL
Sbjct: 440 GKKTARKLNIPKLDDANFAGTRHSKDCTLIITEGDSAKSLVVGGLSIIGRD--YYGVFPL 497

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK+LNV       ++ ++EI  L+  LG        D++ LRY K++IM D D DG+HI
Sbjct: 498 RGKMLNVRDVSRAAVIKNEEIHNLVQILGLKFDTVYDDVSSLRYGKLVIMADQDYDGSHI 557

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           + L++ FF    PSL+   FL     P+   T+G+        +  +++L   +
Sbjct: 558 KGLVINFFQVFWPSLLKLNFLQQFITPIVKATKGRQSFMFFTLQQYKNWLQTHN 611


>gi|4001686|dbj|BAA35072.1| DNA gyrase subunit B [Micromonospora chersina]
          Length = 393

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 184/397 (46%), Positives = 262/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + N     PL   G A + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKDGFVWRQEYHNSKP-TPLEK-GEATDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P +D+F   DF++ T+  RL+E++FL   + I L+D+R       +PRE+T  Y
Sbjct: 59  SAVSFWPDADVFETVDFDFQTIYRRLQEMAFLTRGLTIHLLDERVAEDEEGKPREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKNPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGA-EKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|259018140|gb|ACV89662.1| DNA gyrase subunit B [Nocardia lijiangensis]
          Length = 415

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 180/418 (43%), Positives = 251/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS L+  +  +G  +   + +      L   G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWTQEYKDSKPGKLLQ--GEATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F P S+IF    FN++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTIRFWPDSEIFETTTFNFETVARRLQEMAFLNKGLTITLTDERVSESEVTDEVVSDTAE 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+E FV +++R K+P+  S +   G      +++
Sbjct: 119 APKHLDENAPAAEAPKVKVRTYHYPGGLEDFVKHINRTKQPIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|327200387|gb|AEA36073.1| DNA gyrase subunit B [Sinorhizobium xinjiangense]
          Length = 358

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 257/358 (71%), Positives = 305/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ LKL+I+R G I+EMSF +G+ D PL VTG AG DTGTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSTSLKLKIRRSGKIHEMSFTHGVADGPLQVTGDAGTDTGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS   FS  +F Y TL+HRLREL+FLNS V+I L DKR  + R   M Y+GG+EAFV+Y
Sbjct: 61  LPSEQTFSNVEFEYTTLEHRLRELAFLNSGVRIVLTDKRHSDIRRDEMMYEGGLEAFVAY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+ SP+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVHSPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY E S  +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK KLVSSEVR V
Sbjct: 181 LTRQVTSYAESSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKNKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ L++W EEHP EAK++V KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 241 VESLVNEALNSWFEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE+QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRESQAILPLRGKILNVERARFDKMLSSQE 358


>gi|119226176|dbj|BAF41067.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 417

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 180/420 (42%), Positives = 255/420 (60%), Gaps = 31/420 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  +  +G  +   + +      L V G     TG
Sbjct: 1   GESYAVSGGLHGVGISVVNALSTRLQADVDTDGFHWTQEYKDSKP-GKL-VQGGPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F P  +IF    F+++T+  RL+E++FLN  + I+L D+R  E   I         
Sbjct: 59  TTIKFWPDPEIFETTTFSFETVARRLQEMAFLNKGLTITLTDQRVAEGDVIDEVVSETAE 118

Query: 223 --------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                                 Y GG+E FV +++R K P+  S +   G      +++A
Sbjct: 119 APKHLDENAAVAAPKIKTRTYHYPGGLEDFVKHINRTKTPIHNSIVAFTGKGTGHEVEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+ + ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ +S W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKIADPQFEGQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 417


>gi|19912059|dbj|BAB88341.1| DNA gyrase subunit B [Cytophaga sp. I-601]
          Length = 391

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 177/392 (45%), Positives = 251/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G     +GT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVYREGKIWEQEYSRGKAQYPVKSIGETE-LSGTVVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
           +P   IF+    ++Y+TL +R+REL++LN  + I + DKR+     E    T   + G++
Sbjct: 60  IPDDTIFTQTTEYSYETLSNRMRELAYLNKGITIVITDKRNKDEKGEFISETFHSQEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD  ++PL+ + I ++G ++ I +++AM +N G+ EN+  + NNI   +GGTHLS
Sbjct: 120 EFIKFLDATREPLINTVISMEGEKNGIPVEVAMIYNTGFSENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVSEPQFEGQTKTKLGTR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEEHP +AK IV+KV  A+  R AA +AR++ +RK  +    L
Sbjct: 240 EVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMGGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCS++DP+  E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSDQDPENCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|21238929|dbj|BAB96570.1| DNA gyrase subunit B [Nocardia asteroides]
          Length = 418

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 177/421 (42%), Positives = 252/421 (59%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS L+  I  +G  +   + +      L V G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKLEAEIDNDGYHWTQVYKDAKP-GKL-VQGEATQRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E   I         
Sbjct: 59  TTIRFWADPEIFETTTYNFETVSRRLQEMAFLNKGLTITLTDQRVSESDVIDEVVSDTAE 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+  FV +++R K+ +  S +   G      +++
Sbjct: 119 APKHAEEGVEKPVEHKVKTRTYHYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRY+KII
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYNKII 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|288576045|ref|ZP_05978075.2| DNA topoisomerase IV, B subunit [Neisseria mucosa ATCC 25996]
 gi|288566453|gb|EFC88013.1| DNA topoisomerase IV, B subunit [Neisseria mucosa ATCC 25996]
          Length = 570

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 171/577 (29%), Positives = 273/577 (47%), Gaps = 31/577 (5%)

Query: 100 MTRLHAGGKFNQK----SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
            TRLHAGGKFN+K    +Y  SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +
Sbjct: 2   FTRLHAGGKFNKKDGGSAYAFSGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDV 61

Query: 156 DNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID-- 212
             PL   G     D+GTEV   P    F   +++   L+  LR  + L   V++SL    
Sbjct: 62  VEPLAEVGKCAVKDSGTEVRVWPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPV 121

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKK---PLMQSPIRIQGSRD-----NISIDLAMR 264
           K   E +  T  Y  G++++++ L    +   PL      I    +           A+ 
Sbjct: 122 KGEEEAQTQTWHYPDGLKSYLTDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALT 181

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           W +        + N IP   GGTH +GL+ A+   + +++       +    V  DD   
Sbjct: 182 WLEEGSCTNESYVNLIPTPLGGTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSDDVFS 240

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
               VLS ++ DP+F  QTK+KL + +   +V +   D L  WL ++    K I +  + 
Sbjct: 241 KTAFVLSARVLDPQFQGQTKDKLTNRDALKLVAAVSGDPLELWLNQNVDYGKKIAELAIR 300

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
            +  R  + +      +K    +A LPGKL DC   D +++ELFLVEGDSAGGSAK  R 
Sbjct: 301 QAQARMRSVKK---IEKKKGSGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARD 357

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIII 502
           +  QAILPLRGK+LN      D++  + EI  +  A+G      + + +   LRY KI I
Sbjct: 358 KATQAILPLRGKVLNSFEVHPDQLFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAI 417

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           ++DADVDG+HI+ LLLT F+R  P L+ +G +Y+ +PPL+ +      +    + + + Y
Sbjct: 418 LSDADVDGSHIQVLLLTLFYRHFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPARKFY 474

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
            ++Q+  + I         + K  ++       +    + +  P+  K          + 
Sbjct: 475 ALDQNELDSIL------ERLQKEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDTRRLL 527

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
             +  +  +          +        ++W     +
Sbjct: 528 QVQIPEGADDETRDIFVKLMGKGEAAVRRAWMEREGD 564



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 479 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 537

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 538 -ETRDIFVKLMGKGEAAVRRAWMEREGDTAELDI 570


>gi|310832494|gb|ADP30899.1| DNA gyrase B subunit [Acinetobacter soli]
          Length = 379

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 226/382 (59%), Positives = 280/382 (73%), Gaps = 3/382 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALSS L+L I R G I+E  + +G    PL V       TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPKYPLKVV-GETTTTGTTVRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ FS   F+ D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y
Sbjct: 60  WPSAETFSQTIFSVDILARRLRELSFLNAGVKIVLRDERV--NFEHIYAYEGGLSEFVKY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           ++  K  L         + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+A
Sbjct: 118 INEGKTHLNDIFHFTADADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY+E     KK+K SV GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  
Sbjct: 178 LTRGLNSYLESENILKKEKVSVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLA
Sbjct: 238 VEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC E+DP  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+G
Sbjct: 298 DCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVG 357

Query: 476 TLITALGTGIGQDSFDINKLRY 497
           TLITALG GIG++ ++ +KLRY
Sbjct: 358 TLITALGCGIGREEYNPDKLRY 379


>gi|327200391|gb|AEA36075.1| DNA gyrase subunit B [Sinorhizobium terangae]
          Length = 358

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 257/358 (71%), Positives = 306/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ LKL+I+R G I+EMSF +G+ D PL VTG AG DTGTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSTSLKLKIRRSGKIHEMSFTHGVADGPLQVTGDAGTDTGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS   FS  +F Y TL+HRLREL+FLNS V+I L DKR  + R   M Y+GG+EAFV+Y
Sbjct: 61  LPSEQTFSNVEFEYTTLEHRLRELAFLNSGVRIVLTDKRHSDIRRDEMMYEGGLEAFVAY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+ SP+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVHSPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY E S  +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYAESSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ L++W EEHP EAK++V KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 241 VESLVNEALNSWFEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE+QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRESQAILPLRGKILNVERARFDKMLSSQE 358


>gi|6729237|dbj|BAA89740.1| DNA gyrase subunit B [Mycobacterium szulgai]
          Length = 421

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 183/422 (43%), Positives = 257/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ IKR+G+ +   +   +    L   G A   TG
Sbjct: 3   NSGYNVSGGLHGVGVSVVNALSTRLEVDIKRDGHKWSQFYNKAVP-GTLKQ-GEATKKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    DIF   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVAQDEVVDEVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+ QS +   G  +   ++
Sbjct: 121 APKSAEEKAAESKGPHKVKHRTFHYPGGLIDFVKHINRTKSPIQQSVVAFDGKGEGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K+   ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKEKDANLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 1531

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 144/765 (18%), Positives = 283/765 (36%), Gaps = 82/765 (10%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   ++   RE   +++ 
Sbjct: 133 EKMYVPALIFGQLLTSSNYHDDEKKVTGGRNGYGAKLCNIFSTKFTVQTASREYKKMFKQ 192

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 193 TWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 252

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 253 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTM 303

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 304 SEKGFQQI-SFVNSIATSKGGRHVHYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNH 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
               ++  + +P F SQTKE +            +++             + I+  V   
Sbjct: 360 MWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFK 418

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAK 440
           +         +    +   +          D   R+  +  L L EGDSA      G   
Sbjct: 419 AQ---VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGV 475

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRY 497
            GR +    + PLRGKILNV  A   +++ + EI  +I  +G    ++  D +    LRY
Sbjct: 476 VGRDK--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRY 533

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
            KI+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++ K         
Sbjct: 534 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLP 593

Query: 558 SLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
             E++  +     +    +    G  +  + + +  D  +     K   P       + A
Sbjct: 594 EFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDA 647

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
            IS  F+ +   +    L        NF+ ++ ++   G   +   L  +    +     
Sbjct: 648 AISLAFSKKQIDDRKEWLT-------NFMEDRRQRKLLGLPEDY--LYGQTTTYLTYNDF 698

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKIT 717
           +    I    S  +R   + ++        ++       DK ++ 
Sbjct: 699 INKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 743


>gi|308153054|dbj|BAJ22116.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 418

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 175/421 (41%), Positives = 254/421 (60%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IK +G  ++ ++ +      L V G    +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKP-GEL-VQGDPTKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
           T V+F    +IF    +N++T+  RL+E++FLN  + I+L D+R+               
Sbjct: 59  TTVSFWADPEIFETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPK 118

Query: 217 ---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+E +V ++++ K P+  S +          +++
Sbjct: 119 SAAEEAEEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K     + GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI K+RYHKI+
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKVRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|308152465|dbj|BAJ22211.1| DNA gyrase subunit B [Corynebacterium kutscheri]
          Length = 431

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 189/434 (43%), Positives = 263/434 (60%), Gaps = 45/434 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++  IKR+G+++  +F + +    L     A   +G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVETEIKRDGHLWLQTFDHAVP-AELQQLKPA-RGSG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T+  F P  +IF    FN+DT+  RL+E++FLN  + I+L DKR+ E             
Sbjct: 59  TKQRFWPDPEIFETTTFNFDTVAKRLQEMAFLNKGLTITLTDKRASEEEIELDALAEDID 118

Query: 222 ---------------------------------TMFYKGGIEAFVSYLDRHKKPLMQSPI 248
                                            T FY  G+E +V++L+R K  +  S I
Sbjct: 119 LAEGVSLDQLDTDADAVAATATKNSGKKKEKKKTFFYPNGLEDYVAHLNRSKTTIHPSII 178

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +    +  +++AM+WN GY ++V  F N I   +GGTH  G R+ALT  +  Y  +  
Sbjct: 179 AFEAKGQDHEVEIAMQWNSGYSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAREHK 238

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K+ + ++ GDDCREG  +V+S+++ DP+F  QTK KL ++EV+  V+  VN+ +S WL
Sbjct: 239 LLKEKESNLTGDDCREGLAAVVSVRVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHVSDWL 298

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           + +P EAK I+ K + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP KSEL+
Sbjct: 299 DANPAEAKTIINKAVSSAHARQAARKARDLVRRKSATDLGGLPGKLADCRSKDPVKSELY 358

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  D
Sbjct: 359 IVEGDSAGGSAKGGRDSMYQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HD 417

Query: 489 SFDINKLRYHKIII 502
            FDINKLRYHKI++
Sbjct: 418 EFDINKLRYHKIVL 431


>gi|327200411|gb|AEA36085.1| DNA gyrase subunit B [Rhizobium giardinii]
          Length = 358

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 253/358 (70%), Positives = 305/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL+IKR+G I+E++F +G+ D PL V G +  +TGTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVKLKLKIKRQGKIHEINFTHGVADAPLAVIGDSNGETGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS++ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV+Y
Sbjct: 61  LPSTETFTMIEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIRQDEMIYDGGLEAFVAY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVSKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQI SY + S   KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQIVSYADSSGIMKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP +AKI+V KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 241 VESLVNEALSVWLEEHPGDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|56463173|gb|AAV91728.1| gyrase B [Escherichia coli]
 gi|56463175|gb|AAV91729.1| gyrase B [Escherichia coli]
 gi|56463179|gb|AAV91731.1| gyrase B [Escherichia coli]
          Length = 245

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 135/248 (54%), Positives = 174/248 (70%), Gaps = 4/248 (1%)

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+   I VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKV
Sbjct: 1   LAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKV 60

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F 
Sbjct: 61  SGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFW 119

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV Y
Sbjct: 120 PSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEY 177

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 178 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 237

Query: 296 LTRQITSY 303
           +TR + +Y
Sbjct: 238 MTRTLNAY 245


>gi|255718235|ref|XP_002555398.1| KLTH0G08338p [Lachancea thermotolerans]
 gi|238936782|emb|CAR24961.1| KLTH0G08338p [Lachancea thermotolerans]
          Length = 1436

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 136/643 (21%), Positives = 250/643 (38%), Gaps = 56/643 (8%)

Query: 1   MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES-------------------- 39
           MS +   +  Y     Q +  L+ + KRP  Y+G  + +                     
Sbjct: 1   MSAEKSASERY-----QKISQLEHILKRPDTYVGSVEIQEQTQWIHDEATDCMVEKNVKI 55

Query: 40  --GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
             GL  +  E+L NA D  +       I V +N +     V ++G+GIP ++H++E I  
Sbjct: 56  VPGLFKIFDEILVNAADNKVRDPSMKKIEVNINKEENFIEVKNDGKGIPIEIHEKEQIYI 115

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  SS   L      +G  Y   +   
Sbjct: 116 PEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSSEFILETADPIKGEKYLQKWEAN 175

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQIS 209
           +       +T      + T+V+F P    F ++  + D    ++ R+ +++     + + 
Sbjct: 176 MSICHKPKITSYKKGPSYTKVSFKPDLQRFGMEHLDDDIVGIMRRRVFDINGSVRDISVY 235

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L  K               +++        +   +     I   R N   ++A   +D  
Sbjct: 236 LNGKSLRIRNFKNYVEL-YLKSLEKKKSEEQGADVGKAPTILYERLNDRWEIAFAVSDVA 294

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            + +  F N+I    GGTH++ +      QI   + +    KK  +++     +      
Sbjct: 295 FQQI-SFVNSIATTSGGTHVNYVS----DQIVKKITEHLKKKKKGKTIKAFQIKNHIFIF 349

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           ++ ++ +P F+SQTKE+L +      V  F +         + +    + ++V + +   
Sbjct: 350 VNCQIENPAFTSQTKEQLTTR-----VRDFGSKCDIKDEFINKIMKTELAERVFELADQN 404

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRS 444
           +     +    RK  +   +          +   K  L L EG SA      G A  GR 
Sbjct: 405 EEKALQKSDGSRKNRITKYATLEDANCAGTKQGYKCTLVLTEGLSAQSLAVAGLAVVGRD 464

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
                  PLRGK+LNV  A  +++  + EI  +   +G    +   D   LRY  I+IMT
Sbjct: 465 --YYGCYPLRGKMLNVREASAEQINKNAEIQAIKKIVGLQHRKKYEDTKSLRYGHIMIMT 522

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           D D DG+HI+ L++ F     P L+   GFL     P+  +T  +  + V    ++ DY 
Sbjct: 523 DQDHDGSHIKGLIINFLESSFPGLLDIPGFLIEFITPIVKVTITRPKRDVISFYNMPDYE 582

Query: 564 I-NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
              +  S +          +  + L+   +    +D  +K F+
Sbjct: 583 EWREKESHKYSWKQKYYKGLGTSSLQEAREYFSDLDTHLKKFH 625


>gi|327200339|gb|AEA36049.1| DNA gyrase subunit B [Agrobacterium larrymoorei]
          Length = 358

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 248/358 (69%), Positives = 300/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKVHEIGFSHGVADKPLEVIGDYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S D F++ ++NY TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+EAFV Y
Sbjct: 61  LASPDTFTMTEYNYATLEHRLRELAFLNSGVRILLTDKRHSDIKQEEMVYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY + S  +KK+K S+ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYADSSGITKKEKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ VN+ L+ W EEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VENLVNEALNTWFEEHPTEAKILVGKVVEAAVAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|294950051|ref|XP_002786436.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
 gi|239900728|gb|EER18232.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
          Length = 1579

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 120/600 (20%), Positives = 230/600 (38%), Gaps = 57/600 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            + +  ++ +  RP  Y+G  + ++                      GL+ +  E+L NA
Sbjct: 19  YKKMTQIEHILARPDTYVGSLEHQTERMWVWESETGHIVQKQITFCPGLYKIFDEILVNA 78

Query: 53  IDESLE--GYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
            D       + + I V ++  +G   V +NG+G+P  +HKE  +   E++   L     +
Sbjct: 79  ADNLQRDPKHMNTIKVDIDAENGFIKVYNNGKGLPIQIHKEHHVYVPELVFGHLLTSDNY 138

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           + K  KV+GG +G G  + N  S    +    +    +Y+  F   +      V      
Sbjct: 139 DDKEKKVTGGRNGYGAKLSNIFSKKFLITTADRTRKKLYKQQFEKSMQKKKEPVITDYDK 198

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL-----SFLNSSVQISLIDKRSPEPREIT 222
           +  T V F P  + F +   + D +    + +     +  +   ++ L  KR P      
Sbjct: 199 EDFTCVQFWPDLEKFGMTHLDADIVSLMSKRVIDVAGTSASKKCKVYLNGKRVPISSFKD 258

Query: 223 MFYKGGIEAFVSYLDRHKK-----PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                    +V     ++K       +         R  + + L+     G     + F 
Sbjct: 259 YAELYLTGEWVDAPKIYEKVARANVYVSCGHVQVSDRWEVLVTLSDPAGGGGQFQQVSFA 318

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N+I    GGTH++ +   +   + + ++K+    K    +     +      ++  + +P
Sbjct: 319 NSINTVKGGTHVNHVAEQI---VNAVLKKAQTKNKGGMELKPFQVKNHMWLFVNALIENP 375

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM----VRDAAR 393
            F SQTKE L        V  F +  + +      + +  IV +V++ +         ++
Sbjct: 376 TFDSQTKETLTLK-----VAKFGSKCVLSEGTMKKVLSSGIVDQVVNWAKFKQTATLQSK 430

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQ 448
                T  +  +          D   R   +  L L EGDSA      G    GR +   
Sbjct: 431 IKVGGTGGQTRIFGVPKLEDANDAGGRYSDRCTLILTEGDSAKALAVAGLGVIGRDK--Y 488

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            + PLRGK+LNV  A + + + ++EI  ++  +G    +    +  LRY  I++MTD D+
Sbjct: 489 GVFPLRGKVLNVREASYKQTVDNKEIQAILKIIGLEPRKAYDGVKGLRYGSIMVMTDQDL 548

Query: 509 DGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           DG+HI+ LL+       P L+   GF+     P+    +G+           E++  N +
Sbjct: 549 DGSHIKGLLINLVHHWWPGLLQTRGFMKEFVTPIVKCVKGRRELSFFTLTEYEEWKRNNN 608


>gi|83954053|ref|ZP_00962773.1| DNA topoisomerase IV subunit B [Sulfitobacter sp. NAS-14.1]
 gi|83841090|gb|EAP80260.1| DNA topoisomerase IV subunit B [Sulfitobacter sp. NAS-14.1]
          Length = 308

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 100/253 (39%), Positives = 140/253 (55%), Gaps = 9/253 (3%)

Query: 1   MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           MSD           YDA SIQ+L+ ++ V+ RP MYIG  D    LHHM+ E++DN++DE
Sbjct: 1   MSDLLSGAQSNAKEYDASSIQVLEDMEHVRLRPGMYIGGKDD-RALHHMVAEIIDNSMDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSY 114
           ++ G+A  I + L+ +G  TV DNGRGIPTD H +    SA E+I   L+AGGKF+  SY
Sbjct: 60  AVAGHATWIELELHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSY 119

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           + SGGLHGVG SVVNALS  L++ + R   ++ M F  GI    L   G+A N  GT VT
Sbjct: 120 ETSGGLHGVGSSVVNALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRRGTAVT 179

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAF 232
           F P ++IF         L    R  ++L S V+I      +    P+E T  + GG+  +
Sbjct: 180 FHPDAEIFGPLKLKPARLFTMARSKAYLFSGVEIRWKCGQQDGDTPQEATFHFPGGLSDY 239

Query: 233 VSYLDRHKKPLMQ 245
           ++   +       
Sbjct: 240 LNETLKGSTTTPS 252


>gi|259018154|gb|ACV89669.1| DNA gyrase subunit B [Nocardia gamkensis]
          Length = 414

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 178/417 (42%), Positives = 252/417 (60%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I  +G  +  ++ + +    L + G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDHDGYHWSQTYKDAVP-GKL-IQGEPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHAEEGTAPAEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFPNTINTHEGGTHEEGFRAALTTVVNKYAKDKRLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 414


>gi|226323237|ref|ZP_03798755.1| hypothetical protein COPCOM_01009 [Coprococcus comes ATCC 27758]
 gi|225208427|gb|EEG90781.1| hypothetical protein COPCOM_01009 [Coprococcus comes ATCC 27758]
          Length = 510

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 171/492 (34%), Positives = 256/492 (52%), Gaps = 13/492 (2%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           + ++I R+G ++   +  GI    L      V G     TGT V FLP   IF    F  
Sbjct: 1   MDVKISRDGAVHHDRYERGIPVVELEDGLLPVIGKTK-KTGTCVNFLPDPTIFEKTRFKE 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + ++ RL E ++LN  + I   DKR  +   I      GI  F+  L+  K+ +   P+ 
Sbjct: 60  EEIKSRLHETAYLNPELTIIFTDKRKTQEERIEYHEPDGIIGFIKDLNSKKEVIH-DPVY 118

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
            +G  + I +++A ++ + +HENVL F NNI   +GGTHL+G ++  T  +  Y  +   
Sbjct: 119 YKGEAEGIEVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTIMNQYAREIGV 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K    +  G D R G T+++SIK PDPRF  QTK KL + +         +D +  + +
Sbjct: 179 LKDKDANFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNQDAAKATGKVTSDEIPRFFD 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +    K ++     A+ +R    +A+     +         GKLA+C  RD  K E+F+
Sbjct: 239 RNLETLKKVLSCAEKAAKIRKTEEKAKTNLLTRQK-YSFDSNGKLANCESRDASKCEIFI 297

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ-- 487
           VEGDSAGGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A G G  +  
Sbjct: 298 VEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLANAEIKTMINAFGCGFSEGY 357

Query: 488 -DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT- 545
            + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +Y+  PPLY    
Sbjct: 358 GNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVAMPPLYKAMP 417

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +    +Y+ D+++LE Y         ++ +     + ++      ++   ++ K I+   
Sbjct: 418 KKGEEEYLYDDKALERYR-KTHSDFTLQRYKGLGEMDAEQLWETTLNPETRMMKRIEIED 476

Query: 606 PNHDKTFIEQAV 617
                   E  +
Sbjct: 477 ARMASGVTEMLM 488



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 51/69 (73%)

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEM+A QLWETTLNP+TR + R++I DA  A  +   LMG EV PRR FI E
Sbjct: 442 TLQRYKGLGEMDAEQLWETTLNPETRMMKRIEIEDARMASGVTEMLMGTEVPPRRAFIYE 501

Query: 795 NSLPSALDI 803
           N+  + LDI
Sbjct: 502 NATEAELDI 510


>gi|119226146|dbj|BAF41052.1| DNA gyrase subunit B [Mycobacterium diernhoferi]
          Length = 420

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 176/421 (41%), Positives = 247/421 (58%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  + R+G  +  ++   +    L   G     TG+
Sbjct: 3   GAYQVSGGLHGVGVSVVNALSTRLEADVCRDGYEWFQTYDKSVP-GTLRQ-GEKTKKTGS 60

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 61  TIRFWADPDIFETTTYDFETIARRLQEMAFLNKGLTIELTDERVAPASVVDEVVSDHAEA 120

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K  +  S I  +G      +++
Sbjct: 121 PKSADEKAAEAAAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFEGKGPGHEVEI 180

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD
Sbjct: 181 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDPNLTGDD 240

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L  W + +P EAK +V K
Sbjct: 241 IREGLAAVISVKVQQPQFEGQTKTKLGNTEVKSFVQKICNEELQHWFDANPAEAKTVVNK 300

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 301 AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKS 360

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI+
Sbjct: 361 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHKIV 419

Query: 502 I 502
           +
Sbjct: 420 L 420


>gi|119369952|gb|ABL67990.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 174/429 (40%), Positives = 235/429 (54%), Gaps = 13/429 (3%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF  K Y  SGGLHGVG SVVNALS WL++ + RE   + M F  G   
Sbjct: 1   EVIMTVLHAGGKFGGKVYDTSGGLHGVGSSVVNALSEWLEVEVARERQNHVMRFERGKPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLID--- 212
             L  TG + N  GT V F P + IF S   F+   L    +  ++L   V+I       
Sbjct: 61  GKLKNTG-SVNRRGTIVRFKPDAQIFGSEAHFSPAMLYRMAKSKAYLFRGVEIHWRCDPG 119

Query: 213 --KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS--IDLAMRWNDG 268
             +    P +  + + GG+  F+      +  +       +    +    ++ A+ W   
Sbjct: 120 LIRNGKTPADEILKFPGGLADFLRSEIEGETTVSPRLFLGRTENKDGKGAVEWAVAWAPE 179

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
               +  F N IP   GGTH  GLR+ALT+ + +Y E++   K  +  +  DD      +
Sbjct: 180 RDGFMQSFCNTIPTPLGGTHEQGLRNALTKALRAYGERAGNKKTAQ--ITPDDVMSAACA 237

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VLS+ + +P F  QTKEKL + + + +VE+ V D    WL E P EA  ++  V+D +  
Sbjct: 238 VLSVFIREPEFQGQTKEKLSTQDAQRLVETVVRDHFDHWLAESPAEADRLLSFVIDQADD 297

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R   R+ R+ T+RK       LPGKL DC+   P  +ELFLVEGDSAGGSAKQ R R  Q
Sbjct: 298 RLKRRQDRE-TQRKSATRKLLLPGKLTDCTRDAPGGTELFLVEGDSAGGSAKQARDRTTQ 356

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           A+LPLRGKILNV  A   K+  +QE+  L+ ALG G G   +   +LRY ++IIMTDADV
Sbjct: 357 AVLPLRGKILNVASAAAGKLAQNQELSDLLLALGCGAGSK-YREEELRYERVIIMTDADV 415

Query: 509 DGAHIRTLL 517
           DG+HIRTLL
Sbjct: 416 DGSHIRTLL 424


>gi|308153162|dbj|BAJ22170.1| DNA gyrase subunit B [Mycobacterium chelonae]
          Length = 419

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 176/422 (41%), Positives = 251/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L I R+G+ ++  +   +    L   G+A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELEILRDGHEWQQVYTASVP-GTLQQ-GAATKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    +IF    ++++T+  RL+E +FLN  + I L D+R                
Sbjct: 59  TTVRFWADPEIFETTTYDFETVARRLQEQAFLNKGLTIKLTDERVSNADVTDEVVSDTAE 118

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +     Y  G+  FV +++R K  +  + +   G  +   ++
Sbjct: 119 APKTAEEQAAESAAPHKVKNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GD
Sbjct: 179 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDTNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W + +P +AK +V 
Sbjct: 239 DIREGLAAVISVKVGEPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 359 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|308153196|dbj|BAJ22187.1| DNA gyrase subunit B [Gordonia bronchialis]
          Length = 421

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 184/424 (43%), Positives = 252/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ ++L I   G  +E ++ +     PL   G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQTYDHAKP-GPLEK-GEATRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F P  DIF    F+ +T+  RL+E++FLN  + I+L DKR                
Sbjct: 59  TLVRFWPDPDIFETTVFSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDDS 118

Query: 215 ----------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             +P+  T  Y  G+  ++ +L+R K+P+  S +          
Sbjct: 119 VADAAETVKTEEEKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + 
Sbjct: 179 VEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L+ W E +P EAKII
Sbjct: 239 GDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAEAKII 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           +KK +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 IKKAVDSAQARVAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|68445348|dbj|BAE03175.1| DNA gyrase subunit B [actinobacterium Aac-33]
          Length = 399

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 178/401 (44%), Positives = 255/401 (63%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG SVVNALS+ L + +K EG ++   ++ G+   PL   G A  DTG
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTEGFLWTQEYLRGVPTAPLKK-GEAVGDTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T +TF    +IF    +N++TL  R +E++FLN  V I LID+R     +          
Sbjct: 60  TTITFWADDEIFETTTYNFETLSRRFQEMAFLNRGVSIELIDERPEYKDDEGNSRSVHYK 119

Query: 225 YKGGIEAFVSYLDRHK-KPLMQSPIRI--QGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV Y++  K + +    I I  +     IS ++A++WN+ Y E+V  F N I 
Sbjct: 120 YDGGIADFVRYINAAKGEMVHPQVIEIGSEDKERRISAEIALQWNNQYSESVYTFANVIQ 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSALT  +  Y +     K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + L+ W + +P EA+ I++K + A+  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEARTFVQKITYEALADWFDRNPGEARDIIRKSIQAATARIAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKL+DC   +P + E+F+VEGDSAGGSAKQGR    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLSDCQSTNPVECEIFVVEGDSAGGSAKQGRDPRVQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L +     LI+ALGTGI +D FD+++LRYHKI++
Sbjct: 360 KARIDKVLQNSRGAGLISALGTGIHED-FDVSRLRYHKIVL 399


>gi|6729180|dbj|BAA89723.1| DNA gyrase subunit B [Micromonospora purpureochromogenes]
          Length = 393

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 184/397 (46%), Positives = 258/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYSNSKP-TPLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN  + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRGITIHLLDERVPEGEEGKIREVTFRY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 DGGIADFVRHLNASKNPMHKTVVEFDAEEEGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|12060257|dbj|BAB20482.1| b subunit of GyrB typeII topoisomerase [Comamonas testosteroni]
          Length = 307

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 150/309 (48%), Positives = 195/309 (63%), Gaps = 32/309 (10%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLH 88
           DT   +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H
Sbjct: 1   DTSDGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH 60

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
            E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  +E+
Sbjct: 61  -EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGRRHEI 119

Query: 149 SFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHR 195
            F  G +             +P+ V G A +  GT+V FLP  +IF     F Y+ L  R
Sbjct: 120 DFSRGFVQNRLIEVVDGAEVSPMRVVG-ASDKRGTKVHFLPDQEIFKENFEFRYEILAKR 178

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLN+ V+I L D+R  +         GG++ FV +++  KK L  +     GSR 
Sbjct: 179 LRELSFLNNGVRIRLKDERDGKE--DDFSGAGGVKGFVQFINGTKKVLHPTTFHANGSRP 236

Query: 256 ----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                      I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+ 
Sbjct: 237 AETYGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIA 296

Query: 306 KSFGSKKDK 314
            +  +KK K
Sbjct: 297 DNEMAKKAK 305


>gi|119226144|dbj|BAF41051.1| DNA gyrase subunit B [Mycobacterium chlorophenolicum]
          Length = 418

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 178/421 (42%), Positives = 251/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  ++++G  +  ++   +    L   G     TGT
Sbjct: 1   GAYQVSGGLHGVGVSVVNALSTRLEADVRKDGYEWFQTYDRSVP-GTLRQ-GEKTKGTGT 58

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF   +++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 59  TIRFWADPDIFETTNYDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEA 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K  +  S I   G      +++
Sbjct: 119 PKSAEEKAAEQSAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGPGHEVEI 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKEKDPNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 239 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKTVVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 359 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|119226164|dbj|BAF41061.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247]
          Length = 421

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 185/424 (43%), Positives = 252/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ ++L I   G  +E ++ +     PL   G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQTYDHAKPQ-PLEK-GDATRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F P  +IF    F+ +T+  RL+E++FLN  + I+L DKR                
Sbjct: 59  TLVRFWPDPEIFETTVFSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDES 118

Query: 215 ----------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             +P+  T  Y  G+  ++ +L+R K+P+  S I          
Sbjct: 119 VADAAETVKTEEEKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVIGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + 
Sbjct: 179 VEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L+ W E +P EAKII
Sbjct: 239 GDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAEAKII 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           +KK +D+S  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 IKKAVDSSQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|115500934|dbj|BAF34137.1| B subunit gyrase [Azotobacter armeniacus]
          Length = 377

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 213/380 (56%), Positives = 285/380 (75%), Gaps = 4/380 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSV NALS  L L I+R+  ++E ++++G+   PLV  G     TGT++ F
Sbjct: 1   VSGGLHGVGVSVGNALSEQLVLTIRRDNKVWEQTYMHGVPQAPLVAVGDT-QGTGTQIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV Y
Sbjct: 60  KPSAETFHNIHFSWDILAKRLRELSFLNSGVGIVLQDERSGKE--ELFKYEGGLKAFVDY 117

Query: 236 LDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+ +K  + Q     +Q   D + +++A++WNDG++EN+LCFTNNIPQ+DGGTHL+G RS
Sbjct: 118 LNTNKNAVSQVFHFNMQREEDGVGVEIALQWNDGFNENILCFTNNIPQRDGGTHLAGFRS 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E+   +KK K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 ALTRNLNAYIEQEGLAKKHKVVTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +      +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 AVEQEMGRYFGDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP   EL++VEGDSA GSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSS E+
Sbjct: 298 ADCQEKDPALCELYIVEGDSADGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSAEV 357

Query: 475 GTLITALGTGIGQDSFDINK 494
           GTLITALG GIG++ ++I+K
Sbjct: 358 GTLITALGCGIGREEYNIDK 377


>gi|224007445|ref|XP_002292682.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971544|gb|EED89878.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1230

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 125/589 (21%), Positives = 228/589 (38%), Gaps = 54/589 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
            ++ Q    L+ +  RP  YIG T+  +                      GL+ +  E++
Sbjct: 42  EETYQKKTQLEHILLRPDTYIGSTEPLTQPMFVLNAETNRIAQRDVTYTPGLYKIFDEIV 101

Query: 50  DNAIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D        D + VT++ + G+ +V +NG+GIP  +HKE       +I   L  G 
Sbjct: 102 VNAADNKQRDPNMDRMEVTVDAESGTISVLNNGKGIPVVMHKEHNCYVPTLIFGHLLTGS 161

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSA 165
            F+    K +GG +G G  + N  S+   +      EG  ++  F N +           
Sbjct: 162 NFDDDEKKTTGGRNGYGAKLANIFSTEFIVECVDSNEGMKFKQVFRNNMHVKEDPKVKKC 221

Query: 166 -----GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                     T++TF P  + F++   + DT+    +    +  S+       +  +   
Sbjct: 222 TAAELKKGDYTKITFKPDLNRFNMTSLDTDTVGLLSKRAYDIAGSM-----ANKEGKKLS 276

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
           + +  K                +          +     ++ +  +DG  + +  F N I
Sbjct: 277 VYLNGKKLPVKDFKSYLALFDGITPPAAY---EKVGDRWEVGISVSDGSFQQI-SFVNAI 332

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
               GG H++ +   + + + + V+K     K    +  +  +   +  ++  + +P F 
Sbjct: 333 ATTKGGGHVNYIADQVAKSLQASVKKKN---KGGTEIKPNQIKNHLSVFVNCLVENPTFD 389

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTKE L +       E  ++D     +E+       +V  ++  +  +      R    
Sbjct: 390 SQTKENLTTRPSAFGKEGQLSDKFMKQVEKCG-----VVDAIMSYAKFKQNQALKRKGGT 444

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKI 457
           +K  L   +      +      K   L + EGDSA   A  G S   R+   + PL+GK 
Sbjct: 445 KKTKLTGITKLDDANNAGTAKSKDCTLIITEGDSAKSLAVSGLSVVGRDFYGVFPLKGKP 504

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADVDGAHIRT 515
           LNV  A   +++ ++EI  L+  +G   G      +I  LRY  ++IM D D DG+HI+ 
Sbjct: 505 LNVRDATHSQIMKNEEIMNLVEIMGLKFGTTYTEENIKSLRYGHLMIMADQDHDGSHIKG 564

Query: 516 LLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           L++ F     PSL+    FL     P+   T+GK           E++ 
Sbjct: 565 LIINFIHHFWPSLLDIPDFLMQFITPIVKCTKGKKSHTFFTLPEYEEWK 613


>gi|187471795|gb|ACD11208.1| DNA gyrase B subunit [Nocardia sp. W8988]
          Length = 415

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 176/418 (42%), Positives = 251/418 (60%), Gaps = 31/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETAE 118

Query: 214 -----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                        P+ +  T  Y GG+E FV +++R K+ +  + +          +++A
Sbjct: 119 APKHDEGTATPPEPKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           R    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKI 415


>gi|27530811|dbj|BAC54053.1| DNA gyrase subunit B [Rhodococcus sp. MBIC01430]
 gi|27530815|dbj|BAC54055.1| DNA gyrase subunit B [Rhodococcus sp. MBIC01431]
 gi|27530817|dbj|BAC54056.1| DNA gyrase subunit B [Rhodococcus sp. MBIC01452]
          Length = 423

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 178/426 (41%), Positives = 253/426 (59%), Gaps = 37/426 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L+I R+G+ Y  ++       PL   G    +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELQIARDGHRYTQTYDYAKP-GPLETVGETK-ETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F P   IF   DF+++T+  RL+E++FLN  + I+ ID+R                
Sbjct: 59  TTVRFWPDGKIFETLDFSFETVHRRLQEMAFLNKGLTINYIDERVASTDASEEELGETAL 118

Query: 215 ----------------SPEPREITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGSRDN 256
                             + R+ T  Y  G+  FV +++  + + P+  S +      + 
Sbjct: 119 APKSAEEEQAEVASVKPAKARKRTYHYPDGLVDFVKHINAKKSQTPIHSSVVGFTAKGEG 178

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    
Sbjct: 179 HEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRTALTSTVNKYALEKKLVKEKDIK 238

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           + GDD REG  +V+S+++ +P+F  QTK KL ++E+RS V+   N+ L  W E +P +AK
Sbjct: 239 LTGDDIREGLAAVISVRVGEPQFEGQTKTKLGNTEIRSFVQKACNEHLGHWFESNPADAK 298

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
            I+ K + ++  R AAR+AR++ RRK   DI  LPGKLADC   DP KSE+++VEGDSAG
Sbjct: 299 TIINKAVSSAQARMAARKAREMVRRKSATDIGGLPGKLADCRSNDPSKSEIYIVEGDSAG 358

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR    QAILPLRGKI+NVE+AR D++L + E+  +ITA GTGI  D FDI KLR
Sbjct: 359 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNNEVQAIITAFGTGI-HDEFDITKLR 417

Query: 497 YHKIII 502
           YHKI++
Sbjct: 418 YHKIVL 423


>gi|108860571|dbj|BAE96000.1| DNA gyrase B [Rhodococcus maanshanensis]
          Length = 410

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 175/413 (42%), Positives = 249/413 (60%), Gaps = 24/413 (5%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ +++ I  +G  +  ++   +    L V G     TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVEVEIDNDGYHWNQTYTKAVP-GEL-VKGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T V F    DIF    +N +T+  RL+E++FLN  + I+L D+R  +             
Sbjct: 59  TTVRFWADPDIFETTTYNAETVARRLQEMAFLNKGLTITLTDERITDEEVAAEAEYDADA 118

Query: 223 -------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
                          Y GG+E +V +++R K+ +  S +          +++AM+WN GY
Sbjct: 119 PKAPEVQSVRTRTYHYPGGLEDYVRHINRTKQSIHNSVVGFTAKGTGHELEVAMQWNSGY 178

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  ++
Sbjct: 179 SESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAI 238

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P +AK IV K + ++  R
Sbjct: 239 VSVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLSHWFESNPADAKTIVTKAVSSAQAR 298

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QA
Sbjct: 299 VAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMYQA 358

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 ILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 410


>gi|119226156|dbj|BAF41057.1| DNA gyrase subunit B [Rhodococcus zopfii]
          Length = 421

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 177/424 (41%), Positives = 253/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ L++ I  +G  +E ++        L V G+    TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRLEVEIDVDGYHWEQTYHASKP-GEL-VRGAEAKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTEEVVSELAE 118

Query: 215 ----------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +     Y GG+E +V +L+R K+P+  S +          
Sbjct: 119 APKTAEEQESEQSPEAPHKVKSRVYHYPGGLEDYVRHLNRTKQPIHNSVVGFTARGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ WLE +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVSEPQFEGQTKTKLGNTEVKSFVQKACNEHLTHWLESNPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 VTKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKCEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDISKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|308224984|gb|ADO24084.1| DNA gyrase beta subunit [Nocardia sp. W9800]
 gi|308224986|gb|ADO24085.1| DNA gyrase beta subunit [Nocardia sp. W9912]
 gi|308224988|gb|ADO24086.1| DNA gyrase beta subunit [Nocardia sp. W9915]
 gi|308224990|gb|ADO24087.1| DNA gyrase beta subunit [Nocardia sp. W9988]
          Length = 415

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 181/418 (43%), Positives = 252/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            ++Y VSGGLHGVG+SVVNALS+ L+  I  +G  +   + +      L V G A   TG
Sbjct: 1   SEAYSVSGGLHGVGISVVNALSTRLEAEIDNDGYHWTQEYKDSKP-GKL-VQGEATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F P  +IF    FN++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTIRFWPDPEIFETTTFNFETVARRLQEMAFLNKGLTITLTDERVSESEVTDEVVSDTAE 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+E FV +L+R K+P+  S +   G      +++
Sbjct: 119 APKHLDENAPVAEEPKVKVRTYHYPGGLEDFVKHLNRTKQPIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|211927105|dbj|BAG82805.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 409

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 181/411 (44%), Positives = 259/411 (63%), Gaps = 21/411 (5%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + +K +G+ +   +  G+   PL     A  +TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTKVAVEVKTDGHRWTQDYKLGVPTAPLAQ-NEATEETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    DIF   +++++TL  R +E++FLN  + ++L D+R                
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTLTLTDERESARATAGADSAEEQD 119

Query: 216 -PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHE 271
             + R +T +Y+GGI  FV Y   R  + +  + I I+       +S+++AM+WN  Y E
Sbjct: 120 SDQARTVTYYYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYTE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N I   +GGTH  G R+ALT  +  Y       ++   ++ G+D REG T+++S
Sbjct: 180 GVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREGLTAIIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++E ++ V+  V++ L+ W + +P EA  IV+K + A   R A
Sbjct: 240 VKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQAQTARVA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAIL
Sbjct: 300 ARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           P+RGKILNVE+AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 PIRGKILNVEKARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIIL 409


>gi|86169583|gb|ABC87031.1| DNA gyrase subunit B [Weissella viridescens]
          Length = 394

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 184/395 (46%), Positives = 265/395 (67%), Gaps = 4/395 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
              YKVSGGLHGVG SVVNALS+ L + + R+   Y+M F  G + + +      G    
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELDVIVVRDDKAYDMDFERGHVKDSIHEVSPEGLAVS 60

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GT V F P  DIF     F+  TL +R+REL+FLN  ++IS+ D R  EP   +  Y+G
Sbjct: 61  RGTIVHFTPDPDIFQETTEFDIKTLTNRVRELAFLNKGLRISITDNRPAEPVTESFHYEG 120

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+ +V YLD +K  L + P+ ++G+ + I++++++++ D +H N++ F N I   +GGT
Sbjct: 121 GIKEYVEYLDVNKDVLFEDPVYVEGTENGIAVEVSLQYTDDFHSNMMSFANKIHTYEGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H +G +SALTR I  Y  K+   K    S+ G+D REG T+++S+K PDP+F  QTK KL
Sbjct: 181 HETGFKSALTRVINDYARKNSILKDGDESLSGEDVREGLTAIVSVKHPDPQFEGQTKTKL 240

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +S+ R+ V+   ++  S ++ E+P  A+ IV+K + A+  R AA+RAR+ TR+K  L+I
Sbjct: 241 GNSDARTAVDRMFSETFSRFMLENPATAREIVEKGMLANKARKAAKRAREATRKKSGLEI 300

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ++LPGKLAD + +DP+  ELF+VEGDSAGGSAKQGR R  QAILP+RGKILNVE+A  DK
Sbjct: 301 SNLPGKLADNTSKDPEIFELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASIDK 360

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +L ++EI +L TA+GTG G D FD+ K +YHK+II
Sbjct: 361 ILGNEEIRSLFTAMGTGFG-DEFDVTKAKYHKLII 394


>gi|51870734|dbj|BAD42422.1| DNA gyrase subunit B [Halobacillus sp. IS-Hb5]
          Length = 374

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 224/377 (59%), Positives = 281/377 (74%), Gaps = 3/377 (0%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
            R G +YE  + +G+ D+PL V G     +GT+V F PS++ F+  +F+YD L  RLREL
Sbjct: 1   WRAGQVYEQIYHHGVPDSPLDVVGKTE-KSGTQVNFKPSTETFANIEFHYDILAKRLREL 59

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V I LID+RS    E    Y+GG+ AFV +L+ +K  L Q         D I++
Sbjct: 60  SFLNSGVAIRLIDERSG--AEELFHYEGGLRAFVDHLNTNKTALNQIFHFETQRDDGIAV 117

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WND + EN+ C+TNNIPQ DGGTHL+G R+ALTR +  Y+E     KK K +  G
Sbjct: 118 EVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFRAALTRTLNHYIESEGLLKKAKVNTSG 177

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   LS +L E P EAK IV
Sbjct: 178 DDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQLSDYLVERPNEAKAIV 237

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSA
Sbjct: 238 NKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSA 297

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           KQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLIT LG GIG++ F+ +KLRYH 
Sbjct: 298 KQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITVLGCGIGREEFNPDKLRYHS 357

Query: 500 IIIMTDADVDGAHIRTL 516
           IIIMTDADVDG+HIRTL
Sbjct: 358 IIIMTDADVDGSHIRTL 374


>gi|259018106|gb|ACV89645.1| DNA gyrase subunit B [Nocardia uniformis]
          Length = 415

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 175/418 (41%), Positives = 245/418 (58%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  I R+G  +   + +      L V G      G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLQAEIDRDGYHWSQEYKDSKP-GKL-VQGDTTKRKG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTIRFWADPNIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVSEGDVTDEVVSDTAE 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+E +V +++R K P+  S +   G      +++
Sbjct: 119 APKHADETAAAAATPKVKTRTYHYPGGLEDYVKHINRTKTPIHNSIVAFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P +AK IV K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLGHWFEANPADAKTIVTK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE++R DK+L + E+  +ITA GTGI  D FD+ KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKSRIDKVLKNNEVQAIITAFGTGI-HDEFDLAKLRYHK 415


>gi|281208664|gb|EFA82840.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1524

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 132/643 (20%), Positives = 252/643 (39%), Gaps = 67/643 (10%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GL 41
           + N+++     ++ + ++ LD +  RP  YIG T+ +                     GL
Sbjct: 131 TKNVKSVD---ETYKRMELLDQILLRPDTYIGSTEKQEEELWIWENERMVRRKISYVPGL 187

Query: 42  HHMIYEVLDNAIDESLE------GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGIS 94
           + +  E+L NA D               I V ++ +     V ++G G+P ++HK+E + 
Sbjct: 188 YKIFDEILVNAADNIQRPLQEGQKKMKQIKVEIDPEHNRIMVWNDGPGVPVEMHKKEQMY 247

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFIN 152
             E+I   L     ++    +++GG +G G  + NA S+   +     G   +++ +F  
Sbjct: 248 VPEMIFGHLLTSSNYDDSEKRLAGGRNGFGAKLANAFSTEFLVECADSGRRKLFKQTFKA 307

Query: 153 G-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT----LQHRLRELSFLNSSVQ 207
                    +T  +     T++TF P    F +     D     L  R+ +++  N S++
Sbjct: 308 NLKNREKPEITTYSKATDYTQITFYPDLSKFGMLSMLDDDNVALLTKRVYDIAGCNPSLK 367

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           ++L  +        +                     ++    I   R +   ++A+  + 
Sbjct: 368 VTLNGEDLNIKSFQSYIQL-------------YFKSLEKAPEIYYERVSERWEIAIALSH 414

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
               N + F N+I    GGTH++   + +  +I   V+K     K K  +     +    
Sbjct: 415 EGQFNQVSFVNSICTPKGGTHVTHALNDVLAEIGKAVQK---KHKSKAEIKPAFIKNHLF 471

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F SQTKE L +       +   ++    +L++       IV +++  + 
Sbjct: 472 VFVNSLIENPAFDSQTKENLSTKITSFGSQCHPSEK---FLKKIVESKSGIVDQIISYAK 528

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADC--SERDPKKSELFLVEGDSAGGSAKQGRSR 445
            ++     R+ T         ++P             +   L L EGDSA   A  G S 
Sbjct: 529 HKEEMAMLRNTTATTKKGSRLNIPKLDDANLAGTSHSEDCTLILTEGDSAKTLAVSGISV 588

Query: 446 ---ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
              ++    PLRGK+LNV  +    M++++EI  +I  +G   G+   D+  LRY  ++I
Sbjct: 589 VGWDHYGCFPLRGKLLNVRESDARTMMTNEEIVNIINIMGLQHGKQYEDVKSLRYGHLMI 648

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           MTD D DG+HI+ LLL F     PSL+   GFL     P+   T+G              
Sbjct: 649 MTDQDHDGSHIKGLLLNFIHHFWPSLLRIEGFLVEFVTPIIKATKGNKTIAFYTIPEYLA 708

Query: 562 YLINQSLSEEIEL-----FCDSKGVISKNDLRNFIDDALKIDK 599
           +    +  +  E+        S    +K      ++  +  + 
Sbjct: 709 WREANNNGKGYEIKYYKGLGTSTEEEAKEYFSQLVNHKIDFEY 751


>gi|56463181|gb|AAV91732.1| gyrase B [Escherichia coli]
 gi|56463183|gb|AAV91733.1| gyrase B [Escherichia coli]
 gi|56463185|gb|AAV91734.1| gyrase B [Escherichia coli]
          Length = 245

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 134/248 (54%), Positives = 174/248 (70%), Gaps = 4/248 (1%)

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+   I VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKV
Sbjct: 1   LAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKV 60

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F 
Sbjct: 61  SGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFW 119

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV Y
Sbjct: 120 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEY 177

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 178 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 237

Query: 296 LTRQITSY 303
           +TR + +Y
Sbjct: 238 MTRTLNAY 245


>gi|308153124|dbj|BAJ22151.1| DNA gyrase subunit B [Micromonospora fulviviridis]
          Length = 393

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 183/397 (46%), Positives = 263/397 (66%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G+++   + N     PL   G     TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGSVWRQQYHNSKP-TPLEK-GETTGRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN +++I L+D+R  E      RE+T +Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGA-EKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   N+ L  W + +P EAK+I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|6729241|dbj|BAA89742.1| DNA gyrase subunit B [Mycobacterium intracellulare]
 gi|90654491|gb|ABD96032.1| gyrase B [Mycobacterium indicus pranii]
 gi|308153184|dbj|BAJ22181.1| DNA gyrase subunit B [Mycobacterium intracellulare]
 gi|308153186|dbj|BAJ22182.1| DNA gyrase subunit B [Mycobacterium intracellulare]
 gi|308153188|dbj|BAJ22183.1| DNA gyrase subunit B [Mycobacterium intracellulare]
 gi|308153202|dbj|BAJ22190.1| DNA gyrase subunit B [Mycobacterium intracellulare]
          Length = 421

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 183/422 (43%), Positives = 255/422 (60%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L++ I R+G  +   + + +    L   G A   TG
Sbjct: 3   NSGYNVSGGLHGVGVSVVNALSTRLEVDIARDGYEWSQFYDHAVP-GTLKQ-GEATKRTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    DIF   +++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 61  TTIRFWADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVSNEEVVDEVVSDTAD 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  FV +++R K P+ QS I   G      ++
Sbjct: 121 APKSAQEKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSIIDFDGKGPGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V 
Sbjct: 241 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|110624485|dbj|BAE98189.1| DNA gyrase B subunit [Shewanella colwelliana]
          Length = 373

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 215/376 (57%), Positives = 290/376 (77%), Gaps = 4/376 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L++ I+R+G +YE  + +G+ + P+   G A   TGTE+ F PS +
Sbjct: 1   HGVGVSVVNALSEKLQMTIRRDGKLYEQFYTHGVPNEPIKAIGDAT-TTGTEIRFWPSGE 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+  +F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+ +K
Sbjct: 60  TFTDVEFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNK 117

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 118 TPVNKEVFHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRN 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+++   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 LNTYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQT 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E
Sbjct: 238 MGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 298 KDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 357

Query: 480 ALGTGIGQDSFDINKL 495
           ALG GIG+D +D +K 
Sbjct: 358 ALGCGIGRDEYDPDKT 373


>gi|163256338|dbj|BAF95679.1| DNA gyrase subunit B [Bradyrhizobium sp. MAFF 210197]
          Length = 260

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 150/258 (58%), Positives = 186/258 (72%)

Query: 50  DNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           D+AIDE++ G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF
Sbjct: 2   DDAIDEAVAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKF 61

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +Q SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    
Sbjct: 62  DQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGRR 121

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+
Sbjct: 122 GTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGGV 181

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           E FV YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL
Sbjct: 182 EEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHL 241

Query: 290 SGLRSALTRQITSYVEKS 307
           +G R ALTRQ+  Y E +
Sbjct: 242 AGFRGALTRQVNGYAEAN 259


>gi|259018120|gb|ACV89652.1| DNA gyrase subunit B [Nocardia puris]
          Length = 415

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 178/418 (42%), Positives = 253/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I R+G  +  ++ +    + L + G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVEIDRDGYHWSQTYKDASP-SKL-IQGEPTERTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    +IF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTVRFWADPEIFETTTYNFETVSRRLQEMAFLNKGLTIVLTDERVSDSEITDEVVSDTAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+E FV +++R K+ +  S +   G      +++
Sbjct: 119 APKHAEPGTEAPVEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGDPQFEGQTKTKLGNTEVKSFVQKTCNEHLTHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|253741314|gb|ACT34976.1| DNA gyrase subunit B [Nocardia sp. W9237]
 gi|261343276|gb|ACX70139.1| DNA gyrase subunit B [Nocardia arthritidis]
          Length = 414

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 179/417 (42%), Positives = 251/417 (60%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I  +G  +  ++ + I    L + G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDHDGYHWSQTYKDAIP-GKL-IQGEPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHAEEGTAPAEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKRLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDIGKLRYHK 414


>gi|51571599|emb|CAH18966.1| gyrase B [Corallococcus coralloides]
          Length = 380

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 197/371 (53%), Positives = 265/371 (71%), Gaps = 3/371 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGV+ VN LS W K+RI+R G +YE S+  G+ +      G   +  GT + 
Sbjct: 1   KVSGGLHGVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVANGAPQEVG-TTDKRGTMIH 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F P + +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    ++GGI +FV 
Sbjct: 60  FKPDTQVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFEGGISSFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++
Sbjct: 118 YLNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ 
Sbjct: 178 ALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKG 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKL
Sbjct: 238 LVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI
Sbjct: 298 ADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEI 357

Query: 475 GTLITALGTGI 485
            TLITALGTGI
Sbjct: 358 VTLITALGTGI 368


>gi|321401436|gb|ADW83180.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 364

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 170/364 (46%), Positives = 234/364 (64%), Gaps = 7/364 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            +RK V     LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKIL
Sbjct: 301 VQRKTVWGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKIL 360

Query: 459 NVER 462
           NVE+
Sbjct: 361 NVEK 364


>gi|327200371|gb|AEA36065.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 254/358 (70%), Positives = 305/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R+G I EMSF +G+ D PL VTG AG +TGTEV+F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGTETGTEVSF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +PSS+ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV Y
Sbjct: 61  MPSSETFTMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVRQEEMLYDGGLEAFVKY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+  +D I++++AM WN+ YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVDKPVSIRSEKDGITVEVAMWWNESYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY E S  +K++K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ L  WLEEHP  AK++V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALGTWLEEHPANAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|321401438|gb|ADW83181.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 363

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 170/363 (46%), Positives = 233/363 (64%), Gaps = 7/363 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            +RK V     LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKIL
Sbjct: 301 VQRKTVWGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKIL 360

Query: 459 NVE 461
           NVE
Sbjct: 361 NVE 363


>gi|148971355|gb|ABR20215.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 173/429 (40%), Positives = 234/429 (54%), Gaps = 13/429 (3%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF  K Y  SGGLHGVG SVVNALS WL++ + RE   + M F  G   
Sbjct: 1   EVIMTVLHAGGKFEGKVYDTSGGLHGVGSSVVNALSEWLEVEVARERQNHVMRFERGKPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLID--- 212
             L  TG + N  GT V F P + IF S   F+   L    +  ++L   V+I       
Sbjct: 61  GKLKNTG-SVNRRGTIVRFKPDAQIFGSEAHFSPAMLYRMAKSKAYLFRGVEIHWRCDPS 119

Query: 213 --KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS--IDLAMRWNDG 268
             +    P +  + + GG+  F+      +  +       +    +    ++ A+ W   
Sbjct: 120 LIRNGKTPADEILKFPGGLADFLRSEIEGETTVSPRLFLGRTENKDGKGAVEWAVAWAPE 179

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
               +  F N IP   GGTH  GLR+ALT+ + +Y E++   K  +  +  DD      +
Sbjct: 180 RDGFMQSFCNTIPTPLGGTHEQGLRNALTKALRAYGERAGNKKTAQ--ITPDDVMSAACA 237

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VLS+ + +P F  QTKEKL + + + +VE+ V D    WL   P EA  ++  V+D +  
Sbjct: 238 VLSVFIREPEFQGQTKEKLSTQDAQRLVETVVRDHFDHWLAGSPAEADRLLSFVIDQADD 297

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R   R+ R+ T+RK       LPGKL DC+   P  +ELFLVEGDSAGGSAKQ R R  Q
Sbjct: 298 RLKRRQERE-TQRKSATRKLRLPGKLTDCTRDAPGGTELFLVEGDSAGGSAKQARDRTTQ 356

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           A+LPLRGKILNV  A   K+  +QE+  L+ ALG G G   +   +LRY ++IIMTDADV
Sbjct: 357 AVLPLRGKILNVASAAAGKLAQNQELSDLLLALGCGAGSK-YREEELRYERVIIMTDADV 415

Query: 509 DGAHIRTLL 517
           DG+HIRTLL
Sbjct: 416 DGSHIRTLL 424


>gi|327200389|gb|AEA36074.1| DNA gyrase subunit B [Sinorhizobium fredii]
          Length = 358

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 258/358 (72%), Positives = 305/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D PL +TG AG++TGTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVTLKLKIRRAGKIHEMSFTHGVADGPLAITGDAGSETGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS   FS  +F++ TL+HRLREL+FLNS V+I L DKR  + R   M Y GG+EAFV+Y
Sbjct: 61  LPSEQTFSKTEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDEMMYDGGLEAFVAY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP EAKI+V KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 241 VESLVNEALSVWLEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|259018100|gb|ACV89642.1| DNA gyrase subunit B [Nocardia xishanensis]
          Length = 415

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 180/418 (43%), Positives = 256/418 (61%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS L+  +  +G  +   + +      L + G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRLEAEVDHDGYHWTQEYKDSKP-GKL-MQGEATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P ++IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWPDAEIFETTTFNFETVARRLQEMAFLNKGLTITLTDERVSGSEVTDEVVSDTAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                         P+ +  T  Y GG+E FV +++R K+P+  S +   G      +++
Sbjct: 119 APKHLDENAPAAEEPKVKVRTYHYPGGLEDFVKHINRTKQPIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 415


>gi|23451181|gb|AAN32695.1| DNA gyrase subunit B [Aeromonas enteropelogenes]
          Length = 371

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 215/374 (57%), Positives = 274/374 (73%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G A   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR  
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTF 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y++K   SKK +    GD  REG  +V+S+K+  P+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NFYMDKRNSSKKAQCPASGDYVREGLIAVISVKVRIPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVSKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD   SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDXXXSSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
            G GIG+D ++ +K
Sbjct: 358 XGCGIGRDEYNPDK 371


>gi|20387218|dbj|BAB91309.1| gyrase B [Streptomyces spiroverticillatus]
 gi|308152583|dbj|BAJ22270.1| DNA gyrase subunit B [Streptomyces spiroverticillatus]
          Length = 409

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 181/411 (44%), Positives = 258/411 (62%), Gaps = 21/411 (5%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + IK +G  +   +  G+    L     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTKVSVEIKTDGYRWTQDYKLGVPTAALER-HEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    DIF   +++++TL  R +E++FLN  + I L D+R                
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTIKLTDERESAKAVAGADTAETSD 119

Query: 216 -PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHE 271
             + R +T  Y+GGI  FV Y   R  + +  + I ++       +S+++AM+WN  Y E
Sbjct: 120 DEQVRTVTYHYEGGIVDFVKYLNSRKGELIHPTVIDVEAEDKERLLSVEIAMQWNSQYSE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N I   +GGTH  G R+ALT  +  Y  +    ++   ++ G+D REG T+++S
Sbjct: 180 GVYSFANTIHTHEGGTHEEGFRAALTGLVNRYAREKKFLREKDDNLAGEDIREGLTAIIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++E ++ V+  V++ L+ W + +P EA  IV+K + A+  R A
Sbjct: 240 VKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLNDWFDRNPNEAADIVRKAIQAATARVA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAIL
Sbjct: 300 ARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           P+RGKILNVE+AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII+
Sbjct: 360 PIRGKILNVEKARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIIL 409


>gi|221487518|gb|EEE25750.1| DNA topoisomerase II, putative [Toxoplasma gondii GT1]
          Length = 1688

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 148/764 (19%), Positives = 270/764 (35%), Gaps = 124/764 (16%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG T+  +                      GL+ ++ E+L NA
Sbjct: 41  YQKKSQLEHILLRPDTYIGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEILVNA 100

Query: 53  ID-ESLEGY-------------ADIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAE 97
            D ++ EG                 I + +N   G  ++ ++G GIP  +H+E  +   E
Sbjct: 101 ADVKAREGEEQKGKPLKPGARRMSAIKIDINKASGRISIWNDGEGIPVAIHQEHKVYVPE 160

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI 154
           +I  +L     ++    +V+GG +G G  + N  S    +    +G     ++M++   +
Sbjct: 161 MIFGQLLTSDNYDDSECRVTGGRNGYGAKLTNIFSREFTVECA-DGERKKKFKMTWTKNM 219

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLN------SS 205
                    S       +++F+P    F +  F+ D    L+ R  +L+  +      + 
Sbjct: 220 EQKSESEISSYNGTDYVKISFIPDFAKFGMTGFDDDSLSLLRKRAYDLAGTSGVKVFLNG 279

Query: 206 VQISLI------------------DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ-- 245
            +I +                    K   E  E    +  G +   +     KK  ++  
Sbjct: 280 TRIDINSFSQYVDLYLGGRKSEKPSKEKEEFDESDDDWDEGPKRKKAAKKNGKKGELEDE 339

Query: 246 -------SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                      I+        ++ +   DG     + F N+I    GGTH+S +   L  
Sbjct: 340 EDVANGVEKKVIKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKGGTHVSHVIEPLLA 399

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR----- 353
            I   V+K+    K    +     ++     +S  + +P F SQTKE L +   +     
Sbjct: 400 AI---VKKANTKNKGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPAKFGSKC 456

Query: 354 --------SVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDASMVRDAA--------- 392
                    VV+S + + +  W +      +     ++      ++  D           
Sbjct: 457 TLADKTIGQVVKSSIVENVVLWAQTKQQSVRAFSLSLLDCWRRGALSVDRPVFRLFVFVE 516

Query: 393 ---RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRS 444
              +     T+ +  L          D   R  +   L L EGDSA      G +  GR 
Sbjct: 517 LRKQMKVGKTKGRERLAGIPKLEDANDAGGRHSQDCTLILTEGDSAKTSCLAGLSVVGRD 576

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R    + PLRGK+LNV  A F ++  ++EI  ++  +G  +   + D   LRY  ++IMT
Sbjct: 577 R--YGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDRTEDTRGLRYGSVMIMT 634

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           D D DG+HI+ LL+       P L+   GFL     P+  +++    +        E + 
Sbjct: 635 DQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKAFYTIPEYEQWK 694

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            + + +     +    G  +  + + + +D  K       +   HD   I+ A       
Sbjct: 695 RSCNTTGWKIKYYKGLGTSTDREFKEYFNDLDKHQIDF-VWSGQHDGELIDMAF------ 747

Query: 624 CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667
            +   E                   S  S+   +N   IL  R 
Sbjct: 748 NKKRAEDRKRWLQSYQEGTFVDHNASSLSYSDFVNKELILFSRY 791


>gi|19912063|dbj|BAB88343.1| DNA gyrase subunit B [Cytophaga sp. I-1147]
          Length = 391

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 176/392 (44%), Positives = 250/392 (63%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ LK  + REG I+E  +  G    P+   G     +GT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVYREGKIWEQEYSRGKAQYPVKSIGETE-LSGTVVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
           +P   IF+    ++Y+TL +R+REL++LN  + I + DKR+     E    T   + G++
Sbjct: 60  IPDDTIFTQTTEYSYETLSNRMRELAYLNKGITIVITDKRNKDEKGEFISETFHSQEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD  ++PL+ + I ++G ++ I +++AM +N G+ EN+  + NNI   +GGTHLS
Sbjct: 120 EFIKFLDATREPLINTVISMEGEKNGIPVEVAMIYNTGFSENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVSEPQFEGQTKPKLGTR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEEHP +AK IV+KV  A+  R AA +AR++ +RK  +    L
Sbjct: 240 EVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMGGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCS++DP+  E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSDQDPENCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         K RYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLEKSRYH 391


>gi|259018098|gb|ACV89641.1| DNA gyrase subunit B [Nocardia brevicatena]
          Length = 415

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 180/418 (43%), Positives = 251/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  IK +G  +  ++ +      L V G    +TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLEAEIKHDGYHWSQTYKDAAP-GKL-VQGEPTRETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F P  ++F    FN++T+  RL+E++FLN  + I L D+R  E             
Sbjct: 59  TTIRFWPDPEVFETTTFNFETVARRLQEMAFLNKGLTIVLTDERVSEAEITDDVVSETAE 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+E FV +++R K P+  S +   G      +++
Sbjct: 119 VPKHAENGEQQPAEPKVKTRTYHYPGGLEEFVRHINRTKTPIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGI-HDEFDIGKLRYHK 415


>gi|330367275|dbj|BAK19432.1| DNA gyrase subunit B [Helicobacter marmotae]
          Length = 368

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 169/373 (45%), Positives = 239/373 (64%), Gaps = 5/373 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L + IK+ G+IY   F  GI  + L + G+   + GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSKHLIMTIKKNGHIYRQEFAKGIPQSDLEIIGNTK-EHGTTIEFF 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P  ++  V +F+   L  R +E+++LN +V I+  D+R+            G        
Sbjct: 60  PDGEVMEVLEFDAQVLITRFKEMAYLNHNVTITFKDERTGLEENYHFEGGLG----QFIH 115

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           D +KKP + S I       +  +++A+ +N+GY E VL F NNI   DGGTH +G R+ L
Sbjct: 116 DINKKPFISSIISFDCLEQDCEVEVALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGL 175

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           +R I +Y+E +  +++    + G+D REG  +++S K+ DP+F  QTK KL SS V+ +V
Sbjct: 176 SRAIMNYIEANASAREKDSKISGEDVREGLVAIISTKVIDPQFEGQTKGKLGSSFVKPIV 235

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +    + LS + EE+P EAK I++K + A+  R+AA++ARDLTR+K    + +LPGKLAD
Sbjct: 236 QKLSYEKLSKFFEENPNEAKAIMQKAIMAARGREAAKKARDLTRKKENFSVGTLPGKLAD 295

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP+KSE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S EI  
Sbjct: 296 CQSKDPEKSEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSDEIKN 355

Query: 477 LITALGTGIGQDS 489
           +ITA G GIG + 
Sbjct: 356 MITAFGCGIGDEF 368


>gi|327200375|gb|AEA36067.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
 gi|327200381|gb|AEA36070.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 254/358 (70%), Positives = 306/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R+G I EMSF +G+ D PL VTG AG +TGTEV+F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGTETGTEVSF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +PSS+ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV Y
Sbjct: 61  MPSSETFTMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVRQEEMLYDGGLEAFVKY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+  +D I++++AM WN+ YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVDKPVSIRSEKDGITVEVAMWWNESYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY E S  +K++K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ L  WLEEHP +AK++V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|82949451|dbj|BAE53386.1| DNA gyrase B [Smaragdicoccus niigatensis]
          Length = 419

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 177/422 (41%), Positives = 247/422 (58%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I  +G  +  ++         +V G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVDINHDGYNWTQTYNYAKPTE--LVRGKATRATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP------------ 218
           T + F    +IF    +++DT+  RL+E++FLN  + I L DKR  E             
Sbjct: 59  TTIRFWADPNIFETTTYSFDTVARRLQEMAFLNKGLTIVLTDKRVKEEDVVDEVVSDTAE 118

Query: 219 ------------------REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                                T  Y GG+  FV +++R K P+  S +          ++
Sbjct: 119 APKGHDEAAADAPVVHKVMTRTYHYPGGLNDFVKHINRTKTPIHTSVVGFSEKGTGHELE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GD
Sbjct: 179 IAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLSGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ ++ W E +P +AK I+ 
Sbjct: 239 DIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHIAHWFEANPADAKTIIN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K L +   R AAR+AR+L RRK   DI  LPGKLADC   DP + EL++VEGDSAGGSAK
Sbjct: 299 KALSSMQARVAARKARELVRRKSATDIGGLPGKLADCRSNDPSRCELYVVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI
Sbjct: 359 TGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|4996808|dbj|BAA78449.1| subunit B protein of DNA gyrase [bacterium rM11]
          Length = 304

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 150/308 (48%), Positives = 196/308 (63%), Gaps = 32/308 (10%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHK 89
           T   +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H 
Sbjct: 1   TSDGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH- 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  YE+ 
Sbjct: 60  EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEID 119

Query: 150 FINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRL 196
           F  G +             +P+ V G + +  GT+V FLP  +IF     F Y+ L  RL
Sbjct: 120 FSRGHVQNRLIEVVDGAEVSPMRVVGES-DKRGTKVHFLPDQEIFKENFDFRYEILAKRL 178

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD- 255
           RELSFLN+ V+I L D+R  +         GG++ FV +++  KK L  +     GSR  
Sbjct: 179 RELSFLNNGVRIRLKDERDGKE--DDFSGAGGVKGFVEFINGTKKVLHPTAFHAMGSRPA 236

Query: 256 ---------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                     I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E+
Sbjct: 237 ETYGGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQ 296

Query: 307 SFGSKKDK 314
           +  +KK K
Sbjct: 297 NDLAKKAK 304


>gi|327200379|gb|AEA36069.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 254/358 (70%), Positives = 307/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R+G I EMSF +G+ D PL VTG AG++TGTEV+F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGSETGTEVSF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +PSS+ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV Y
Sbjct: 61  MPSSETFTMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVRQEEMLYDGGLEAFVKY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+  +D I++++AM WN+ YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVDKPVSIRSEKDGITVEVAMWWNESYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY E S  +K++K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ L  WLEEHP +AK++V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|163256336|dbj|BAF95678.1| DNA gyrase subunit B [Bradyrhizobium sp. MAFF 210190]
          Length = 257

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 149/255 (58%), Positives = 185/255 (72%)

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+A  + VTLN D S TV D+GRGIP  +HKEEG+SAAEVIMT+LHAGGKF+Q 
Sbjct: 1   IDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGVSAAEVIMTQLHAGGKFDQN 60

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTE
Sbjct: 61  SYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTE 120

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTFL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E F
Sbjct: 121 VTFLASTETFKNVEYDFATLEHRLRELAFLNSGVHIVLSDMRHAVEKREEMHYSGGVEEF 180

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G 
Sbjct: 181 VKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGF 240

Query: 293 RSALTRQITSYVEKS 307
           R ALTRQ+  Y E +
Sbjct: 241 RGALTRQVNGYAEAN 255


>gi|148616448|gb|ABQ96967.1| GyrB [Nocardiopsis dassonvillei]
          Length = 388

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 177/390 (45%), Positives = 254/390 (65%), Gaps = 6/390 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           KSY VSGGLHGVGVSVVNALS+ L++ I+  G+++   +        L V G + ++TGT
Sbjct: 1   KSYAVSGGLHGVGVSVVNALSTALEVEIRLHGHVWRQRYEMTAPTGEL-VKGESTDETGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKG 227
           ++TF P  DIF    F+++TL  R++E++FLN  + I++ D+R       P   T  Y  
Sbjct: 60  QITFWPDGDIFETTTFSFETLARRMQEMAFLNKGLSITIRDERPEHTDGGPTVNTFHYDE 119

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+  +V +++  K+P   S I  +   + IS+++AM+WN  Y  +V  F N I   +GGT
Sbjct: 120 GLSDYVRHINAKKEPAHASIISFEEEGEGISVEIAMQWNQSYTSSVHTFANTINTAEGGT 179

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G RSALT  +  Y       ++   ++ GDD REG T+++S+K+ DP+F  QTK KL
Sbjct: 180 HEEGFRSALTTLVNRYARDQKLLREKDDNLTGDDIREGLTAIISVKLADPQFEGQTKTKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E +S V+   N+ L  W E +P EAK IV K   A+  R AAR+ARDLTRRK +L+ 
Sbjct: 240 GNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAARARVAARQARDLTRRKTLLET 299

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR+  NQAILP+RGKILNVE++R D+
Sbjct: 300 TSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEKSRIDR 359

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           +L + E+  +ITALGTGI ++ FD  KLRY
Sbjct: 360 ILKNAEVQAIITALGTGIHEE-FDAEKLRY 388


>gi|28974161|gb|AAO61450.1| gyrase B subunit [Bacillus safensis]
          Length = 375

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 181/375 (48%), Positives = 257/375 (68%), Gaps = 3/375 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ L + + R+G I+   F  G+    L V G   + TGT   F+P  +IF+  
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTET 59

Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+YDTL +R+REL+FL   V I + D R  + R+    Y+GGI+++V +L+R K+ + 
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERKNEYCYEGGIKSYVEHLNRSKEVVH 119

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           + P+ I+G +D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y 
Sbjct: 120 EEPVYIEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYA 179

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
            K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L
Sbjct: 180 RKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEAL 239

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P  AK IV+K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  
Sbjct: 240 EKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSI 299

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+  +ITALGTG
Sbjct: 300 SELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAMITALGTG 359

Query: 485 IGQDSFDINKLRYHK 499
           IG+D F +   RY +
Sbjct: 360 IGED-FTLEIARYEQ 373


>gi|308152515|dbj|BAJ22236.1| DNA gyrase subunit B [Mycobacterium moriokaense]
          Length = 419

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 181/421 (42%), Positives = 255/421 (60%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y VSGGLHGVGVSVVNALS+ L+  I  +G  +  ++ N I    L   G     TGT
Sbjct: 2   GAYSVSGGLHGVGVSVVNALSTRLEADICTDGYEWFQTYDNSIP-GTLKQ-GEKTKKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    ++F   +++++T+  RL+E++FLN  + I+L D+R                 
Sbjct: 60  TIRFWADPNVFETTNYDFETVARRLQEMAFLNKGLTITLSDERVTADEVTDEVVSDTAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+  FV +++R K P+ QS +   G  +   +++
Sbjct: 120 PKSAEEKAAEAAGPHKVKHRTFHYPGGLVDFVKHINRTKSPIHQSIVDFSGKGEGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A++WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD
Sbjct: 180 ALQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|259018194|gb|ACV89689.1| DNA gyrase subunit B [Nocardia abscessus]
          Length = 414

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 180/417 (43%), Positives = 252/417 (60%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  I  +G  +   + +      L + G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEIDHDGYHWTQEYKDATP-GKL-IQGEATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWPDPNIFETTSFNFETVARRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHADAEAPQAEHKVKSRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K    ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGI-HDEFDISKLRYHK 414


>gi|261343284|gb|ACX70143.1| DNA gyrase subunit B [Nocardia speluncae]
          Length = 415

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 180/418 (43%), Positives = 249/418 (59%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I  +G  +  ++ + +    L V G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDTDGYHWSQTYKDAVP-GQL-VQGDATKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F     IF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPAIFETTTYNFETISRRLQEMAFLNKGLTIVLTDERVSATEITDEVVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+E FV +++R K+P+  S     G      +++
Sbjct: 119 APKHDEGGEKPALEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVFSFNGKGPGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A++WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K    ++ GDD
Sbjct: 179 ALQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGI-HDEFDIAKLRYHK 415


>gi|259018182|gb|ACV89683.1| DNA gyrase subunit B [Nocardia blacklockiae]
          Length = 411

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 174/414 (42%), Positives = 249/414 (60%), Gaps = 28/414 (6%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ +   I R+G  +   + +      L V G     TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMVTEIDRDGFHWSQEYKDSKP-GKL-VKGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T   F     IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTQRFWADPAIFETTTYNFETIARRLQEMAFLNKGLTITLTDERVSDAEITDEVVSDTAE 118

Query: 215 ---------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
                      + +  T  Y GG+  FV +++R K+P+  + +   G      +++AM+W
Sbjct: 119 APKAEAEPVEHKVKTRTYHYPGGLADFVKHINRSKQPIHNTVVSFTGKGTGHELEVAMQW 178

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD REG
Sbjct: 179 NSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKDKDGNLTGDDIREG 238

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ WLE +P +AK IV+K + +
Sbjct: 239 LAAIVSVKVSDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWLEANPADAKTIVQKAVSS 298

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+AR+L RRK   D+  LPGKLADC  +DP+ SE+++VEGDSAGGSAK GR  
Sbjct: 299 AQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGSAKSGRDS 358

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
             QAILP+RGKI+NVE++R DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 MYQAILPIRGKIINVEKSRIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 411


>gi|119226174|dbj|BAF41066.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 416

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 181/419 (43%), Positives = 254/419 (60%), Gaps = 30/419 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  +   G  +   + +      L + G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEADVDFGGYHWSQEYKDAKP-GKL-IQGDATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWPDPEIFETTTFNFETVARRLQEMAFLNKGLTITLTDQRVSQSDITDEVVSETAE 118

Query: 215 -----------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +  T  Y GG+E FV +++R K+ +  S +   G      +++AM
Sbjct: 119 APKADTIGAPIEAKVKTRTYHYPGGLEDFVKHINRTKQSIHNSIVAFTGKGTGHEVEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T+++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K +
Sbjct: 239 EGLTAIVSVKIADPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC  +DPK SE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSKDPKLSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
               QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKII+
Sbjct: 359 DSMYQAILPIRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIIL 416


>gi|308153082|dbj|BAJ22130.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 415

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 176/418 (42%), Positives = 253/418 (60%), Gaps = 32/418 (7%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SY VSGGLHGVG+SVVNALS+ L + IK +G  ++ ++ +      L V G    +TGT 
Sbjct: 1   SYAVSGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKP-GEL-VQGDPTKETGTT 58

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------- 216
           V+F    +IF    +N++T+  RL+E++FLN  + I+L D+R+                 
Sbjct: 59  VSFWADPEIFETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPKSA 118

Query: 217 -------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +     Y GG+E +V ++++ K P+  S +          +++AM
Sbjct: 119 AEEAEEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGHELEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K     + GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K +
Sbjct: 239 EGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
               QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI+
Sbjct: 359 DSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIV 415


>gi|322824253|gb|EFZ29714.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1461

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 137/712 (19%), Positives = 251/712 (35%), Gaps = 72/712 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           M++      Y     Q     + +  RP MYIG  +  +                     
Sbjct: 1   MANRTVEEIY-----QKKTQHEHILSRPDMYIGTIEPVTEDMWLYDEAENIMKLRKCTWT 55

Query: 40  -GLHHMIYEVLDNAIDESLE---GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGIS 94
            GL+ +  E+L NA D  +    G    I V ++ + G   V +NG GIP   H+E  + 
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPLGQ-TAIKVWIDAERGMVRVYNNGEGIPVQRHREHNLW 114

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFIN 152
             E+I   L     ++    KV+GG +G G  + N  S+  ++     R    + M + N
Sbjct: 115 VPEMIFGYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRN 174

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
            +L++   V   +     T VTF P    F++Q F  D +    R +  +          
Sbjct: 175 NMLESEEPVITPSEGPDYTVVTFYPDFAKFNLQGFGEDMVHMMRRRVYDVAG-------- 226

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
             + +     +       +           + +       SR N   ++ +R ++   + 
Sbjct: 227 -CTDKSLRCYLNDTKIACSSFLEYVDLYPMMGEERKAASYSRVNGRWEVCVRVSNIGFQQ 285

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N+I    GGTH+  +   +  ++T   ++       K  V     R      ++ 
Sbjct: 286 V-SFVNSIATTRGGTHVRYITDQVIAKVTEQAKRK-----SKTEVKPHMIRPHLFVFINC 339

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRD 390
            + +P F SQTKE L + + R      +   +   + +  +  + +       +      
Sbjct: 340 LVENPGFDSQTKETLNTPKNRFGSTCDLPPSMIDCILKSSIVERAVEMANSKLTREIASK 399

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSREN 447
                R        LD A+  G       +   +  L L EGDSA      G   + R+ 
Sbjct: 400 LRNADRKQILGIPKLDDANEAGG------KHGHRCTLILTEGDSAKALCTAGLAVKDRDY 453

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
             + PLRGK LNV  A   K+++  E   +   +G  I Q    + +LRY  ++IM+D D
Sbjct: 454 FGVFPLRGKPLNVRDATLKKVMACAEFQAVSKIMGLDIRQKYSGVERLRYGHLMIMSDQD 513

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHN-GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
            DG+HI+ L++       P LI   GFL     P+    +        D +       + 
Sbjct: 514 HDGSHIKGLIINMIHHYWPDLIKTPGFLQQFITPIVKARKKGRS----DGDDRAISFFSM 569

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI-EQAVISGVFNCE 625
                   + + K  I        I     +          + +     +         +
Sbjct: 570 P------DYFEWKNAIGDGIRNYEIRYYKGLGTSGAKEGREYFENIDRHRLDFVHEDATD 623

Query: 626 SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
             + +      K+  R ++I +    +      N ++   R +  V ++ +L
Sbjct: 624 DARIVMAFAKDKVEERKHWITQFKTNTNVNESMNYNVRTVRYSEFVDKELIL 675


>gi|71417991|ref|XP_810722.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70875297|gb|EAN88871.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1484

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 139/742 (18%), Positives = 262/742 (35%), Gaps = 76/742 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           M++      Y     Q     + +  RP MYIG  +  +                     
Sbjct: 1   MANRTVEEIY-----QKKTQHEHILSRPDMYIGTIEPVTEDMWLYDEAENIMKLRKCTWT 55

Query: 40  -GLHHMIYEVLDNAIDESLE---GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGIS 94
            GL+ +  E+L NA D  +    G    I V ++ + G   V +NG GIP   H+E  + 
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPLGQ-TAIKVWIDAERGMVRVYNNGEGIPVQRHREHNLW 114

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFIN 152
             E+I   L     ++    KV+GG +G G  + N  S+  ++     R    + M + N
Sbjct: 115 VPEMIFGYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRN 174

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
            +L++   V   +     T VTF P    F++Q F  D +    R +  +          
Sbjct: 175 NMLESEEPVITPSEGPDYTVVTFYPDFAKFNLQGFGEDMVHMMRRRVYDVAG-------- 226

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
             + +     +       +           + +       +R N   ++ +R ++   + 
Sbjct: 227 -CTDKSLRCYLNDTKIACSSFLEYVDLYPMMGEERKAASYARVNGRWEVCVRVSNIGFQQ 285

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N+I    GGTH+  +   +  ++T   ++       K  V     R      ++ 
Sbjct: 286 V-SFVNSIATTRGGTHVRYITDQVIAKVTEQAKRK-----SKTEVKPHMIRPHLFVFINC 339

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRD 390
            + +P F SQTKE L + + R      +   +   + +  +  + +       +      
Sbjct: 340 LVENPGFDSQTKETLNTPKNRFGSTCDLPPSMIDCILKSSIVERAVEMANSKLTREIASK 399

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSREN 447
                R        LD A+  G       +   +  L L EGDSA      G   + R+ 
Sbjct: 400 LRNADRKQILGIPKLDDANEAGG------KYSHRCTLILTEGDSAKALCTAGLAVKDRDY 453

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
             + PLRGK LNV  A   K+++  E   +   +G  I Q    + +LRY  ++IM+D D
Sbjct: 454 FGVFPLRGKPLNVRDATLKKVMACAEFQAVSKIMGLDIRQKYSGVERLRYGHLMIMSDQD 513

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHN-GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
            DG+HI+ L++       P LI   GFL     P+    +          +  +  +   
Sbjct: 514 HDGSHIKGLIINMIHHYWPDLIKTPGFLQQFITPIVKARKKGR------SDGDDRAISFF 567

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           S+ +  E        I   ++R +        K  ++++ N D+  ++        +   
Sbjct: 568 SMPDYFEWKNAIGDGIRNYEIRYYKGLGTSGAKEGREYFENIDRHRLDFVHEDATDDARI 627

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
                     +  + +      +  +   + N          R V+    ++   I    
Sbjct: 628 VMAFAKDKVEERKHWITQFKANTNVNESMNYN---------VRTVRYSEFVDKELILFSV 678

Query: 687 SKYKRIFSNRIEENYLTILSLI 708
           +  +R   + I+        +I
Sbjct: 679 ADCERSIPSVIDGLKPGQRKII 700


>gi|259018178|gb|ACV89681.1| DNA gyrase subunit B [Nocardia caishijiensis]
          Length = 414

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 174/417 (41%), Positives = 249/417 (59%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS L+  I  +G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKLEAEIDNDGYHWTQVYKDSKP-GKL-VQGEPTSRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVTESEVTDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+  FV +++R K  +  S +   G      +++A
Sbjct: 119 APKHAEDADAPVEHKVKTRTYHYPGGLVDFVRHINRTKSAIHNSVVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 414


>gi|237830295|ref|XP_002364445.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|211962109|gb|EEA97304.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|221507315|gb|EEE32919.1| DNA topoisomerase II, putative [Toxoplasma gondii VEG]
          Length = 1687

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 145/764 (18%), Positives = 266/764 (34%), Gaps = 124/764 (16%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG T+  +                      GL+ ++ E+L NA
Sbjct: 41  YQKKSQLEHILLRPDTYIGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEILVNA 100

Query: 53  ID-ESLEGY-------------ADIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAE 97
            D ++ EG                 I + +N   G  T+ ++G GIP  +H+E  +   E
Sbjct: 101 ADVKAREGEEQKGKPLKPGARRMSAIKIDINKASGRITIWNDGEGIPVAIHQEHKVYVPE 160

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI 154
           +I  +L     ++    +V+GG +G G  + N  S    +    +G     ++M++   +
Sbjct: 161 MIFGQLLTSDNYDDSECRVTGGRNGYGAKLTNIFSREFTVECA-DGERKKKFKMTWTKNM 219

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLN------SS 205
                    S       +++F+P    F +  F+ D    L+ R  +L+  +      + 
Sbjct: 220 EQKSESEISSYNGTDYVKISFIPDFAKFGMTGFDDDSLSLLRKRAYDLAGTSGVKVFLNG 279

Query: 206 VQISLI------------------DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ-- 245
            +I +                    K   E  E    +  G +   +     KK  ++  
Sbjct: 280 TRIDINSFSQYVDLYLGGRKSEKPSKEKEEFDESDDDWDEGPKRKKAAKKNGKKGELEDE 339

Query: 246 -------SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                      I+        ++ +   DG     + F N+I    GGTH+S +   L  
Sbjct: 340 EDVANGVEKKVIKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKGGTHVSHVIEPLLA 399

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I   V+K+    K    +     ++     +S  + +P F SQTKE L +   +   + 
Sbjct: 400 AI---VKKANTKNKGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPAKFGSKC 456

Query: 359 FVNDGLSAWLEEHPLEAKIIV--KKVLDASMVR--------------------------- 389
            + D     + +  +   +++  +    +                               
Sbjct: 457 TLADKTIGQVVKSSIVENVVLWAQTKQQSVRAFSLSLLDCWRLGALSVDRPVFRLLVFVE 516

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRS 444
              +     T+ +  L          D   R  +   L L EGDSA      G +  GR 
Sbjct: 517 LRKQMKVGKTKGRERLAGIPKLEDANDAGGRHSQDCTLILTEGDSAKTSCLAGLSVVGRD 576

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R    + PLRGK+LNV  A F ++  ++EI  ++  +G  +   + D   LRY  ++IMT
Sbjct: 577 R--YGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDRTEDTRGLRYGSVMIMT 634

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           D D DG+HI+ LL+       P L+   GFL     P+  +++    +        E + 
Sbjct: 635 DQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKAFYTIPEYEQWK 694

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            + + +     +    G  +  + + + +D  K       +   HD   I+ A       
Sbjct: 695 RSCNTTGWKIKYYKGLGTSTDREFKEYFNDLDKHQIDF-VWSGQHDGELIDMAF------ 747

Query: 624 CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667
            +   E                   S  S+   +N   IL  R 
Sbjct: 748 NKKRAEDRKRWLQSYQEGTFVDHNASSLSYSDFVNKELILFSRY 791


>gi|27530803|dbj|BAC54049.1| DNA gyrase subunit B [Nocardia globerula]
 gi|119226150|dbj|BAF41054.1| DNA gyrase subunit B [Nocardia farcinica]
 gi|211927077|dbj|BAG82791.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 418

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 179/421 (42%), Positives = 258/421 (61%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALSS +++ I  +G  +  ++      + L V G   + TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKEATP-SKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+E FV +++R K+ +  S +   G      +++
Sbjct: 119 APKHGEPTGEAASEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI+
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIV 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|259018148|gb|ACV89666.1| DNA gyrase subunit B [Nocardia ignorata]
          Length = 415

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 174/418 (41%), Positives = 249/418 (59%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS L+  I  +G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKLEAEIDNDGYHWTQVYKDSKP-GKL-VQGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVSDSEVTDEVVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+  FV +++R K  +  S +   G      +++
Sbjct: 119 APKHADEVAAQAVEHKVKTRTYHYPGGLVDFVRHINRTKSAIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|164690663|dbj|BAF98615.1| gyrase B [Sporolactobacillus putidus]
          Length = 377

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 184/381 (48%), Positives = 265/381 (69%), Gaps = 5/381 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VG SVVNALS+ + +++ R G++Y   +  G     L V G A + TGT   F+P  +IF
Sbjct: 1   VGASVVNALSTTMWVKVYRNGHVYYQEYHRGKPAEDLKVIGDA-DRTGTTTHFIPDPEIF 59

Query: 183 SVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                F+YDTL+ R+REL+FLN +++IS+ DKR  + R+ T  ++GGI ++V +L+R K+
Sbjct: 60  KETTHFDYDTLRIRVRELAFLNKNIRISIEDKR-EKDRKETFHFEGGIRSYVEFLNRSKE 118

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L Q    ++G +D I +++A+++N+G+   +  F NNI   +GG+H  G + ALTR I 
Sbjct: 119 VLHQPID-LEGEKDGIRVEIALQYNNGFSSQLYSFANNIHTHEGGSHEYGFKIALTRVIN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y +K+   K    ++ G+D REG T+++SIK PDP+F  QTK KL + EVR++ +S  +
Sbjct: 178 DYAKKNQQMKASDPNLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNPEVRAITDSMFS 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P  A++IV+K + A+  R AA++AR+LTRRK  L+ +SLPGKLADC+ RD
Sbjct: 238 ESFSRYLYENPDIARMIVEKGMVAARARSAAKKARELTRRKSSLESSSLPGKLADCTSRD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              SEL++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ EI  +ITAL
Sbjct: 298 ASISELYIVEGDSAGGSAKQGRDRMFQAILPLRGKILNVEKARLDKVLSNAEIRAMITAL 357

Query: 482 GTGIGQDSFDINKLRYHKIII 502
           GTG+G++ F + K RYHKIII
Sbjct: 358 GTGVGEE-FKLEKARYHKIII 377


>gi|108860569|dbj|BAE95999.1| DNA gyrase B [Rhodococcus tukisamuensis]
          Length = 417

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 176/420 (41%), Positives = 249/420 (59%), Gaps = 31/420 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + I  +G  +  ++ +      L + G+    TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDINVDGFEWHQTYTDSKP-GEL-IQGAPTKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T VTF    +IF    +N++T+  RL+E++FLN  + I+L D+R+    +          
Sbjct: 59  TTVTFWADPEIFETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPR 118

Query: 222 -------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                                 Y GG+E +V ++++ K P+  S +   G      +++A
Sbjct: 119 SAAEVEEEEKSGKAKTKSRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K     + GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALDKKLLKDKDPKLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFESNPADAKTIVGKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPAKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 417


>gi|259018134|gb|ACV89659.1| DNA gyrase subunit B [Nocardia nova]
          Length = 413

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 175/416 (42%), Positives = 250/416 (60%), Gaps = 30/416 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETAE 118

Query: 214 ----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +  T  Y GG+E FV +++R K+P+  + +          +++AM
Sbjct: 119 APKHDEGAAAPEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGHELEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K +
Sbjct: 239 EGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
               QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 DSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 413


>gi|19912069|dbj|BAB88346.1| DNA gyrase subunit B [Cytophaga sp. I-545]
          Length = 391

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 179/392 (45%), Positives = 251/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ LK  + REG ++E  +  G    P+   G   N TGT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVHREGKVWEQEYERGKALYPVKSIGET-NVTGTVVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
            P   IF+    +NY+TL +R+REL++LN  + I++ DKR      E    T   + G++
Sbjct: 60  YPDDTIFTQTTEYNYETLANRMRELAYLNKGITITIADKREKDEKGEFVGETFHSEEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD  ++PL+   I ++G ++ I +++AM +N G+ EN+  + NNI   +GGTHLS
Sbjct: 120 EFIKFLDATREPLINHVISMEGEKNGIPVEVAMVYNTGFSENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKYADSSGLLDKVKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEE+P +AK IV+KV  A+  R AA +AR++ +RK  +    L
Sbjct: 240 EVTSAVSQAVSEMLTDYLEENPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMGGGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCS++DP+K E+FLVEGDSAGG+AK GR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSDQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|302746264|gb|ADL62722.1| GyrB [Morganella morganii subsp. sibonii]
          Length = 365

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 216/368 (58%), Positives = 277/368 (75%), Gaps = 4/368 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVN LS  L+L I+R+G ++E  + +G   + L + G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTIVGET-DKTGTRVRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS + F    +F YD L  RLRELSFLNS V I L+DKR  +       Y+GGI+AFV 
Sbjct: 60  WPSMNTFKGETEFQYDILAKRLRELSFLNSGVSIRLVDKRDGKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL R K  +  +       +D+I ++++M+WND + ENV CFTNNIPQ+DGG HL+G R+
Sbjct: 118 YLSRAKTSIHNNVFYFSTEKDDIGVEVSMQWNDSFQENVYCFTNNIPQRDGGAHLAGFRA 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY+EK   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ LS +L+E+P + KIIV K++DA+  R+AARRAR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML SQE+
Sbjct: 298 ADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLGSQEV 357

Query: 475 GTLITALG 482
            TLITALG
Sbjct: 358 ATLITALG 365


>gi|321401440|gb|ADW83182.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 362

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 169/362 (46%), Positives = 233/362 (64%), Gaps = 7/362 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKIL
Sbjct: 301 VQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKIL 360

Query: 459 NV 460
           NV
Sbjct: 361 NV 362


>gi|327200399|gb|AEA36079.1| DNA gyrase subunit B [Rhizobium galegae]
          Length = 358

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 248/358 (69%), Positives = 302/358 (84%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+SF +G+ D PL V G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEISFTHGVADGPLKVIGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L SS+ F++ +++Y TL+HRLREL+FLNS V+I L DKR P+ +E  M Y GG+EAFV Y
Sbjct: 61  LASSETFTMTEYDYGTLEHRLRELAFLNSGVRIRLTDKRKPDIKEEEMLYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+G +D +++++AM WND YHEN+LC TNNIPQ+DGGTH++G R A
Sbjct: 121 LDRSKKPLVDKPVAIKGEKDGMTVEVAMWWNDSYHENMLCSTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES +N+ LS W EEHP EAKI+V KV++A++ R+AAR+A +LTRRKGVLDIASLPGKLA
Sbjct: 241 VESLMNEALSTWFEEHPTEAKILVGKVVEAAVAREAARKAXELTRRKGVLDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML SQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLGSQE 358


>gi|156848882|ref|XP_001647322.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156118007|gb|EDO19464.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1404

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 134/703 (19%), Positives = 251/703 (35%), Gaps = 67/703 (9%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------G 40
           +   +  Y     Q +  L+ + KRP  YIG  + +                       G
Sbjct: 5   EKTASERY-----QKISQLEHILKRPDTYIGSVEVQEQEQWIYNVENESLEEKQVKIVPG 59

Query: 41  LHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEV 98
           L  +  E+L NA D  +       I V +N +     + ++G+GIP ++H +E I   E+
Sbjct: 60  LFKIFDEILVNAADNKVRDPSMKRIDVNINPEENLIEIKNDGKGIPIEIHDKEKIYIPEL 119

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILD 156
           I   L     ++    KV+GG +G G  + N  S+   L       G  Y   + + +  
Sbjct: 120 IFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPSTGKKYIQRWEDNMNT 179

Query: 157 NPLVVTGSAGNDT-GTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLID 212
                  S  N T  T+V+F P    F ++  + D    ++ R+ +++     + + L  
Sbjct: 180 CHPPKITSYKNSTSYTKVSFKPDLKRFKMEKLDDDVVGVMRRRVYDINGSVRDINVYLDG 239

Query: 213 KRSPEPREITMFYKG-GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           K        +               +  +         I   + N   ++A   ++   +
Sbjct: 240 KPLKIRNFKSYVELYLKSLEKKKLTESGESTEDLQTPTILYEKVNDRWEVAFSSSEASFQ 299

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N+I    GGTH++ +   + ++++  ++     KK K++V     +      ++
Sbjct: 300 QV-SFVNSIATTSGGTHVNYITDQIVKKVSEAIK-----KKSKKTVKPFQIKNNMFIFIN 353

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             + +P F+SQTKE+L +      V  F +    + +  + +       K+LD +   D 
Sbjct: 354 SLIENPAFTSQTKEQLTTR-----VRDFGSKCELSNVFINKIMKTDFFDKILDVANQNDQ 408

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRE 446
               +    RK  +              ++  K  L L EGDSA      G    GR   
Sbjct: 409 NALKKSDGTRKIRITEYPKLEDANKAGTKEGHKCTLILTEGDSALSQAVLGLTVVGRD-- 466

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
                PLRGK+LNV  A  D++  + EI  +   +G    +   D   LRY  ++IMTD 
Sbjct: 467 YFGCYPLRGKMLNVREASADQINKNAEIEAIKKIMGLQHKKKYEDTKSLRYGHLMIMTDQ 526

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           D DG+HI+ L++ F     P L++        P          ++    +   +      
Sbjct: 527 DHDGSHIKGLIINFLETSFPGLLN-------IPEFLQEFITPIIKVKISKPRKQTIQFYN 579

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
               E     + +    K+           +   +   +  +         I      + 
Sbjct: 580 IPDYEKWRDEEGQNCTWKH------KYYKGLGTSLGQEFREYFADLDRHLKIFHQLQEDD 633

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
            + I ++ + K A+       + E       N   I +     
Sbjct: 634 KKLIELAFSKKKADDRKEWLRQYEPGTVLDPNLDAIPISDFIN 676


>gi|327131635|dbj|BAK08535.1| DNA gyrase B subunit [Vibrio owensii]
          Length = 366

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 210/367 (57%), Positives = 284/367 (77%), Gaps = 3/367 (0%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F
Sbjct: 1   VGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P
Sbjct: 60  TNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTP 118

Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           +++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + 
Sbjct: 119 IIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLN 178

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + 
Sbjct: 179 TFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMG 238

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+D
Sbjct: 239 EKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 298

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 299 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 358

Query: 482 GTGIGQD 488
           G GIG+D
Sbjct: 359 GCGIGRD 365


>gi|331251443|ref|XP_003338318.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309317308|gb|EFP93899.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1164

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 144/715 (20%), Positives = 251/715 (35%), Gaps = 108/715 (15%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------G 40
               + +Y     Q L  L+ V KRP  YIG  +                         G
Sbjct: 104 KKTASETY-----QKLSQLEHVLKRPDTYIGSVEAIRQFMWIFDKEKKTMVNKEISFVPG 158

Query: 41  LHHMIYEVLDNAIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGIS 94
           L+ ++ E+L NA D      S+    D + VT++ +    +V +NG+GIP ++H+ E I 
Sbjct: 159 LYKIVDEILVNAADNKQRDDSM----DTLKVTIDSEKNIISVMNNGKGIPIEIHETEQIY 214

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFIN 152
             E+I   L AG  F+ +  K +GG +G G  + N  S+   +    K+    Y+  F N
Sbjct: 215 IPELIFGHLLAGSNFDDEEKKTTGGRNGYGAKLANIYSTEFIVEAADKQTAKKYKQIFKN 274

Query: 153 GI-LDNPLVVTGSAGNDTGTEVTFLPSSDIFS------VQDFNYDTLQHRLRELSFLNSS 205
            + +     +T +   +  T+++F P    F+      +       +  R+ +++    +
Sbjct: 275 NMSVKEKPKITENKKGEEYTKISFKPDLVKFNLPAENGLAGDMEALISKRVYDMAGTLRN 334

Query: 206 VQISLIDKRSPEPREITM--FYKGGIEAFVSY------LDRHKKPLMQSPIRIQGSRDNI 257
           V++ L D+R            Y  G+   +                  +   I       
Sbjct: 335 VKVWLNDERIKLTGFKKYVEMYTSGVNEAIKGSAAKALEAPGSPGNGATKTPIIYEECGK 394

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
             ++A   +DG  + V  F N+I    GGTH+  +   L  +I   V K       K ++
Sbjct: 395 RWEIAFAPSDGQFQQV-SFCNSIATTKGGTHVEHIVKQLVEKIIESVNKKK----AKLTL 449

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
                R      ++  + +P F SQTK      E  ++  S          E      K 
Sbjct: 450 KPYQVRNHLWVFVNCLIENPTFDSQTK------ENMTLGMSKFGSKCVMTEEFMKKVMKS 503

Query: 378 -IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
            ++  V+D +  ++ A   +    ++  +          +   R      L L EGDSA 
Sbjct: 504 GVIDSVMDFAKFKEEAALKKTDGSKRSRITGIVKLEDANNAGTRKAADCTLILTEGDSAK 563

Query: 437 GSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
             A  G S   R+N  + PLRGK+LNV  A   ++L++ EI  +   +G   G+     +
Sbjct: 564 SLAVAGLSVIGRDNYGVFPLRGKLLNVREASGAQLLNNAEIQHIKQIMGLQQGKKYASRD 623

Query: 494 KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYV 553
            LRY  ++IMTD  ++                              P+  +TR K     
Sbjct: 624 SLRYGSLMIMTDQAIE---------------------------FITPIVKVTRKKEELSF 656

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 E +              D +G  SK        DA    K       +  K   
Sbjct: 657 FTMPEFEKWKEEND---------DGRGWTSKYYKGLGTSDAKDAKKYFSRMSSHRIKFAP 707

Query: 614 EQAVISGVFNCESDQEIN---VSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
            Q     + +   +++                +     S+ ++   IN   IL  
Sbjct: 708 TQENDRHLIDMAFNKKKADDRKEWLRGFEPGTHLDQNVSQITYTEFINKELILFS 762


>gi|259018174|gb|ACV89679.1| DNA gyrase subunit B [Nocardia concava]
          Length = 414

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 179/417 (42%), Positives = 253/417 (60%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  +  +G  +   + +      L V G A   TG
Sbjct: 1   GESYAVSGGLHGVGISVVNALSTRLEADVDTDGYHWTQEYKDSKP-GKL-VQGGATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F P  +IF    F+++T+  RL+E++FLN  + I+L D+R  E   I         
Sbjct: 59  TTIRFWPDPEIFETTTFSFETVARRLQEMAFLNKGLTITLTDQRVAEGDVIDEVVSETAE 118

Query: 223 --------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                                 Y GG+E +V +++R K P+  S +   G      +++A
Sbjct: 119 APKHLDENAPAETPKIKTRTYHYPGGLEDYVKHINRTKTPIHNSIVAFTGKGTGHEVEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+ + ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ +S W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKIADPQFEGQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPAKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHK 414


>gi|259018112|gb|ACV89648.1| DNA gyrase subunit B [Nocardia testacea]
          Length = 415

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 179/418 (42%), Positives = 252/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  +  +G  +  ++ + +    L V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQTYKDAVP-GQL-VQGEPTKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F     +F    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPAVFETTTYNFETVSRRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSDTAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                         P+ +  T  Y GG+E FV +++R K+P+  S +   G      +++
Sbjct: 119 APKHDDGGEKPAAEPKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVSFNGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|21238927|dbj|BAB96569.1| DNA gyrase subunit B [Streptosporangium violaceochromogenes]
          Length = 397

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 189/399 (47%), Positives = 257/399 (64%), Gaps = 9/399 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            KSY VSGGLHGVGVSVVNALS+ L + I+ +G+ +  S+       PL   G    +TG
Sbjct: 1   SKSYAVSGGLHGVGVSVVNALSAALDVEIRCDGHHWRQSYAASKPTAPLAK-GEPTQETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-----PEPREITMFY 225
           T +TF     IF    +N++TL  R +E++FLN  + I+L D+R       E  E+   Y
Sbjct: 60  TSITFWADETIFETTTWNFETLSRRFQEMAFLNKGLTITLRDERPAHAAGDEAPEVVYHY 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV +L+  K     S I  +   + IS+++AM+WN+ Y E+V  F N I   +G
Sbjct: 120 EGGLSDFVKHLNSKKDAAHLSVIDFEEHGEGISVEIAMQWNNSYSESVYTFANTINTAEG 179

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKK-DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GTH  G R+ALT  +  Y  +    K+    ++ G+D REG T+++S+K+ DP+F  QTK
Sbjct: 180 GTHEEGFRAALTSIVNRYAREQRFLKEGKDDNLAGEDIREGLTAIISVKLADPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL ++E +S V+   ND L  W E +P EAK I+ K L A+  R AAR+ARDLTRRK +
Sbjct: 240 TKLGNTEAKSFVQKACNDHLRDWFERNPGEAKDIINKSLQAARARIAARQARDLTRRKSL 299

Query: 405 LD-IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           L+  + LPGKLADC   DP+K ELF+VEGDSAGGSAK GR  + QAILP+RGKILNVE+A
Sbjct: 300 LESGSGLPGKLADCQWSDPEKCELFIVEGDSAGGSAKGGRDSKYQAILPIRGKILNVEKA 359

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R DK+L + E+  LITA+GTG+  D FDI KLRYHK+I+
Sbjct: 360 RIDKVLKNTEVQALITAMGTGV-HDEFDIAKLRYHKLIL 397


>gi|198042716|gb|ACH81183.1| GyrB [Vibrio sp. UST010723-015]
          Length = 368

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 212/370 (57%), Positives = 286/370 (77%), Gaps = 3/370 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ FS 
Sbjct: 1   VSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV +L+ +K P++
Sbjct: 60  TEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNKTPII 118

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+
Sbjct: 119 EKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSF 178

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + 
Sbjct: 179 MDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEK 238

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP 
Sbjct: 239 LSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 298

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 299 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 358

Query: 484 GIGQDSFDIN 493
           GIG+D ++ +
Sbjct: 359 GIGRDEYNPD 368


>gi|300675588|gb|ADK26456.1| DNA gyrase subunit B [Gordonia bronchialis]
 gi|300675590|gb|ADK26457.1| DNA gyrase subunit B [Gordonia bronchialis]
          Length = 419

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 184/422 (43%), Positives = 250/422 (59%), Gaps = 35/422 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ ++L I   G  +E ++ +     PL   G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQTYDHAKP-GPLEK-GEATRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F P  DIF    F+ +T+  RL+E++FLN  + I+L DKR                
Sbjct: 59  TLVRFWPDPDIFETTVFSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDDS 118

Query: 215 ----------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             +P+  T  Y  G+  ++ +L+R K+P+  S +          
Sbjct: 119 VADAAETVKTEEEKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + 
Sbjct: 179 VEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L+ W E +P EAKII
Sbjct: 239 GDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAEAKII 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           +KK +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 IKKAVDSAQARVAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KI 500
           KI
Sbjct: 418 KI 419


>gi|259018192|gb|ACV89688.1| DNA gyrase subunit B [Nocardia anaemiae]
          Length = 414

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 178/417 (42%), Positives = 248/417 (59%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS  L+  I  +G  +  ++ +      L V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSHRLEAEIDHDGYHWSQTYKDAKP-GKL-VQGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T + F    +IF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTIVLTDERVSDAEVTDEVVSETAE 118

Query: 216 -------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHADEEAPAPAHKVKTRTYHYPGGLEDFVKHINRTKQPIHNSVVSFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLSHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 414


>gi|259018166|gb|ACV89675.1| DNA gyrase subunit B [Nocardia vinacea]
          Length = 414

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 178/417 (42%), Positives = 248/417 (59%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS  L+  I  +G  +  ++ +      L V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSHRLEAEIDHDGYHWSQTYKDAKP-GKL-VQGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T + F    +IF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTIVLTDERVSDTDVTDEVVSETAE 118

Query: 216 -------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHADEEAPAPAHKVKTRTYHYPGGLEDFVKHINRTKQPIHNSVVSFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLSHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 414


>gi|194383172|dbj|BAG59142.1| unnamed protein product [Homo sapiens]
          Length = 1178

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 135/710 (19%), Positives = 265/710 (37%), Gaps = 56/710 (7%)

Query: 29  SMYIGDTDGESGLHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTD 86
            M   +     GL+ +  E+L NA D          I V+++ +    ++ +NG+GIP  
Sbjct: 9   GMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVV 68

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
            HK E +    +I  +L     ++    KV+GG +G G  + N  S+   +    +   +
Sbjct: 69  EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKH 128

Query: 147 --EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSF 201
             + +++N ++            +  T +TF P    F ++  + D    +  R  +L+ 
Sbjct: 129 SFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAG 188

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
               V++    K+             G  ++V    + K       +++     N   D+
Sbjct: 189 SCRGVKVMFNGKK---------LPVNGFRSYVGLYVKDKLDETGVALKVIHELANERWDV 239

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
            +  ++   + +  F N+I    GG H+  +   +  ++   V+K   +     SV    
Sbjct: 240 CLTLSEKGFQQI-SFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQ 295

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            +      ++  + +P F SQTKE + + + +S                +    + I+  
Sbjct: 296 VKNHIWVFINCLIENPTFDSQTKENM-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNW 354

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----G 436
           V   +         +  + +   +          D   +   +  L L EGDSA      
Sbjct: 355 VKFKAQ---TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVS 411

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK-- 494
           G    GR R    + PLRGKILNV  A   +++ + EI  +I  +G    +   D     
Sbjct: 412 GLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLRYKKSYDDAESLK 469

Query: 495 -LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYV 553
            LRY KI+IMTD D DG+HI+ LL+ F     PSL+ +GFL     P+   ++ K     
Sbjct: 470 TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSF 529

Query: 554 KDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
                 +++  +    +     +    G  +  + + +  D  +   L +   P      
Sbjct: 530 YSIPEFDEWKKHIENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPE----- 584

Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672
            + A I+  F+ +   +    L        NF+ ++ ++  HG      +          
Sbjct: 585 -DDAAITLAFSKKKIDDRKEWLT-------NFMEDRRQRRLHGLPEQF-LYGTATKHLTY 635

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI-----LSLICNGDKIKIT 717
             F+ +   +FS     + I S  + + +         +     DK ++ 
Sbjct: 636 NDFINKELILFSNSDNERSIPS--LVDGFKPGQRKVLFTCFKRNDKREVK 683


>gi|4996800|dbj|BAA78445.1| subunit B protein of DNA gyrase [bacterium rM6]
          Length = 297

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 151/300 (50%), Positives = 199/300 (66%), Gaps = 32/300 (10%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGIS 94
           GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V+DNGRGIPT     D H E   S
Sbjct: 1   GLHHLVFEVVDNSIDEALAGYCDDIAVTIHADGSLSVTDNGRGIPTGVKMDDKH-EPKRS 59

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++REG ++++ F  G 
Sbjct: 60  AAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRREGQVHQIEFARGF 119

Query: 155 LD------------NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSF 201
           +             +P+ +TG    D GT V FLP ++IF    DF+YDTL  RLRELSF
Sbjct: 120 VQNRQIEVVDGFETSPMKITGPTE-DRGTAVRFLPDTEIFGDNHDFHYDTLAKRLRELSF 178

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD------ 255
           LN+ V+I LID+R+ +         GG+  FV ++   KK L  +P    G+R       
Sbjct: 179 LNNGVRIRLIDERTGKE--DDFSGAGGVLGFVKFISTGKKVLHPTPFHASGTRPAETYGG 236

Query: 256 ----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                I +++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +K
Sbjct: 237 IPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNEFAK 296


>gi|187471793|gb|ACD11207.1| DNA gyrase B subunit [Nocardia aobensis]
 gi|259018186|gb|ACV89685.1| DNA gyrase subunit B [Nocardia aobensis]
          Length = 415

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 175/418 (41%), Positives = 251/418 (60%), Gaps = 31/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETAE 118

Query: 214 -----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                        P+ +  T  Y GG+E FV +++R K+ +  + +          +++A
Sbjct: 119 APKHDEGSAAPPEPKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKI 415


>gi|6729227|dbj|BAA89735.1| DNA gyrase subunit B [Micromonospora purpureochromogenes]
          Length = 393

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 259/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHHSKP-TPLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P +D+F   DF++ T+  RL+E++FLN  + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDADVFETVDFDFQTIYRRLQEMAFLNRGITIHLLDERVPEGEEGKIREVTFRY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 DGGIADFVRHLNASKNPMHKTVVEFDAEEEGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|259018118|gb|ACV89651.1| DNA gyrase subunit B [Nocardia sienata]
          Length = 415

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 179/418 (42%), Positives = 252/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  +  +G  +  ++ + +    L V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQTYKDAVP-GQL-VQGEPTKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F     +F    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPAVFETTTYNFETVSRRLQEMAFLNKGLTIVLTDERVSDIEITDEVVSDTAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                         P+ +  T  Y GG+E FV +++R K+P+  S +   G      +++
Sbjct: 119 APKHDDNGEKPAAEPKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVSFNGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|46370596|gb|AAS90120.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1662

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 133/689 (19%), Positives = 259/689 (37%), Gaps = 61/689 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT-----------DGES-----------GLHHMIYEVL 49
             + Q    L+ +  RP  Y+G             D  S            L+ +  E+L
Sbjct: 4   ETTYQKKTQLEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFDEIL 63

Query: 50  DNAIDESLE-GYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D          + V ++  +   ++ ++G+GIP  +HKE  I   E+I   L    
Sbjct: 64  VNAADNYQRDKRMKRLDVIIDQKNNCISILNDGKGIPVQIHKEYNIYVPELIFGHLLTSS 123

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSA 165
            +N +  KV GG +G G  + N  S+   +     +    ++M++   + +       S 
Sbjct: 124 NYNDEEKKVVGGRNGFGAKLTNIFSTKFIVESADSKNKKKFQMTWTKNMSEQSEPQISSY 183

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLREL-SFLNSSVQISLIDKRSPEPREI 221
                T++TF P    F +++   D    ++ R+ ++   +  SV++SL  +R       
Sbjct: 184 TESDYTKITFYPDLKKFHMKELEKDIVDLMKKRVYDMAGVIGGSVKVSLNGERISISSFS 243

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                         +         +             ++    ++G  + V  F N+I 
Sbjct: 244 DYCDFYLKNQGAEVIKVSDNKGTNNQR----------WEVIASLSEGQFQQV-SFVNSIC 292

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   +T ++   ++K   S   K+       +      ++  + +P F +
Sbjct: 293 TSKGGTHVNYITDQITEKLMETLKKKEKSLNIKQFQ----VKSHLWIFVNCLIENPSFDT 348

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTKE L   +        V++     L +       I+  +L  +  ++ A+ A+ L+ +
Sbjct: 349 QTKETLTLRQQSFGSTCEVSEKFIKELLKSN-----IINHILLQARAKEQAKMAKTLSAK 403

Query: 402 KG-VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKI 457
           K   L          D   R+ +   L + EGDSA   A  G     R+   + PL+GK+
Sbjct: 404 KQSRLLGVPKLEDANDAGTRNAESCTLIITEGDSAKALAMSGIEVVGRDKFGVFPLKGKM 463

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNV  +   ++  + EI  +I  +G  +  +  ++  LRY  I+IM D D DG+HI+ L 
Sbjct: 464 LNVRDSTSKQITENLEIQNIIKVMGMKLNTNYDNVKSLRYGSIMIMADQDHDGSHIKGLF 523

Query: 518 LTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           + F     PSL   +GFL     P+  + +G         +  + +    +   +     
Sbjct: 524 INFIQNFWPSLFQMDGFLKEFITPIVKVRKGNQSISFFSIQDFKRW--KSTCPNQHLWKI 581

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                +  +  +   +    I+K +  F  N      ++  I   FN +  ++       
Sbjct: 582 KYYKGLGTSTDQEAQEYFGNINKHVISFKYNGKD---DEDAIDLAFNKKRAEDR-KKWLV 637

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVK 665
           K     N    +   ++   +N   I   
Sbjct: 638 KYDPEENVDHSQKHLTYKDFVNKELINFS 666


>gi|27530823|dbj|BAC54059.1| DNA gyrase subunit B [Nocardia salmonicida]
          Length = 418

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 175/421 (41%), Positives = 250/421 (59%), Gaps = 32/421 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I  +G  +  ++ +      L   G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGYHWTQTYKDAKP-GKLAQ-GEATKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    DIF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTVRFWADPDIFETTTYNFETVARRLQEMAFLNKGLTIKLTDERVAVGDVIDEVVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+  FV +++R K  +  S +          +++
Sbjct: 119 APKDAEVVAAEAAEHKVKTRTYHYPGGLVDFVRHINRTKSAIHNSVVGYTVKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLQHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRY+KII
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYNKII 417

Query: 502 I 502
           +
Sbjct: 418 L 418


>gi|327200377|gb|AEA36068.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 253/358 (70%), Positives = 306/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R+G I EMSF +G+ D PL VTG AG++TGTEV+F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGSETGTEVSF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +PSS+ F++ +F+Y TL+HRLREL+FLNS V+I L D R  + R+  M Y GG+EAFV Y
Sbjct: 61  MPSSETFTMTEFDYSTLEHRLRELAFLNSGVRILLTDXRHSDVRQEEMLYDGGLEAFVKY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+  +D I++++AM WN+ YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVDKPVSIRSEKDGITVEVAMWWNESYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY E S  +K++K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ L  WLEEHP +AK++V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|168187078|ref|ZP_02621713.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
 gi|169295011|gb|EDS77144.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
          Length = 1417

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 146/756 (19%), Positives = 304/756 (40%), Gaps = 45/756 (5%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGS 73
            ++ LKG + V+KR S+ +G  D   G  H ++E++ N+ID   +G+ + I V  + D S
Sbjct: 3   DLKRLKGSERVRKRVSVMMGS-DDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKHEDLS 61

Query: 74  CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS 133
            T+ D+  G+P D + +E     ++ +  L+AG  ++  S   + G++G+G+      S 
Sbjct: 62  YTIIDHADGLPMDWNDKENAYNWDLALKVLYAGDNYDANS--TALGINGLGLCSSQYASE 119

Query: 134 WLKLRIKREGNIYEMSFINGILDNP----------------------LVVTGSAGNDTGT 171
           ++++   ++   Y +    G   +                       L+V  ++ N TGT
Sbjct: 120 YMEVVSYKDDKKYTVKCKKGRPIDKNTGEFICEDDDTLFAREQGQRVLLVESNSENKTGT 179

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + + P  ++F+  D + D +  +L + + +N  ++I + D++  +              
Sbjct: 180 YIHYKPDLEVFTNIDISIDWINDKLDKQAMVNKELKIEVYDEKEDKLYTHYYESGIKDYI 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW-----NDGYHENVLCFTNNIPQKDGG 286
                D +   ++    + +G       +    +      +     +  + N+     GG
Sbjct: 240 KTISDDNNFSDVIYFTEKGKGRDKVDKPEYDYNYEIALVFNNEINKLEYYHNSSELLQGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           +    +  A T  I  Y + +    K++  +   D ++    V+S       +++QTK  
Sbjct: 300 STADAINLAFTYAINEYAKDNNLFNKNESKIKFTDIQDSLICVISSFSTMTSYANQTKLS 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + +  ++      + + L  +  E+ LEA  IV ++L      D A + +   ++     
Sbjct: 360 IDNKFIKDFTNQSLKEKLKLYFIENKLEAGRIVNQILINKRANDKAEKTKLNIKKTLQTK 419

Query: 407 IA-SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
                      C+  D   +EL+L EG SA GS   GR+ + QA   + GK+L++ +A F
Sbjct: 420 SNFDDTDNFYACTSNDKSITELYLAEGSSAQGSIVMGRNSKFQACYHVGGKMLSLLKADF 479

Query: 466 DKMLSSQEIGTLITALGTGIGQ--------DSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           +K+  ++ +  L   LG GI          ++FD N L Y KII+ TD D D   IR L+
Sbjct: 480 EKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDTDAFQIRCLM 539

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           LT  +R  P+LI +G++YI + PLY IT    + +   EE     L   S         +
Sbjct: 540 LTAIYRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEELSKKGIKYDKPE 599

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
               + + D     +  +                 +E+   +       + +    + + 
Sbjct: 600 RNKGLGEVDSDIIAETMMNPKT---RKITRVTVQDVEKMANTFELWLGDEVKPRKEVITS 656

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR- 696
             + +     + EK     +N + +        ++E+ ++          K         
Sbjct: 657 NFDYIEHFDNEQEKDIVKVLNENYLPYAIEV--IKERAIISIDGFKPAHRKLLWTLHESN 714

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
           +         ++ +   + + G  S+ +T+  + +K
Sbjct: 715 LYNKRTKSAHIVGSNMSLNVHGDGSIYETLVRMAQK 750



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRY------KGLGEMNASQLWETTL 755
             +  +               +  +  + +KGI    Y      KGLGE+++  + ET +
Sbjct: 561 SPLYEITTADKVYHAYTEEEKITILEELSKKGIK---YDKPERNKGLGEVDSDIIAETMM 617

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           NP TR + RV + D  +  + F   +GDEV+PR+E I  N
Sbjct: 618 NPKTRKITRVTVQDVEKMANTFELWLGDEVKPRKEVITSN 657


>gi|6729223|dbj|BAA89733.1| DNA gyrase subunit B [Micromonospora olivasterospora]
          Length = 392

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 183/396 (46%), Positives = 262/396 (66%), Gaps = 8/396 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G+++   + N     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMSVEIHKSGHVWRQQYTNSKP-TPLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYK 226
           + V+F P  D+F   DF++ T+  RL+E++FLN  V I L+D+R      +PRE+T  Y+
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRGVTIHLLDERFQDEDGKPREVTFCYQ 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +GG
Sbjct: 119 GGIADFVRHLNASKNPIHRTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALT  +  Y  +     K    + G+D REG  +++S+K+ +P+F  QTK K
Sbjct: 179 THEEGFRAALTSVVNRYGTERK-LLKGDEKLSGEDIREGLATIISVKLANPQFEGQTKTK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++ V+S V+   N+ L  W + +P EAK+I++K   A+  R AA++AR L RRK +L+
Sbjct: 238 LGNTPVKSFVQRVCNEWLVDWFDRNPTEAKVIIQKASQAARARIAAQQARKLARRKSLLE 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
             S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D
Sbjct: 298 SGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARID 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 RVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 392


>gi|261343282|gb|ACX70142.1| DNA gyrase subunit B [Nocardia acidivorans]
          Length = 415

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 180/418 (43%), Positives = 254/418 (60%), Gaps = 31/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS L+  +  +G  +   + +      L V G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWTQEYKDSKP-GKL-VQGEATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWSDPNIFETTVYNFETVARRLQEMAFLNKGLTITLTDQRVADTDLTDEVVSDTAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                       +P+ +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHLDENAPAATPKVKTRTYHYPGGLEDFVKHINRTKQPIHNSVVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+ + ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVTKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPVKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           R    QAILPLRGKI+NVE++R DK+L + E+  +ITA GTGI  D FDI KLRYHKI
Sbjct: 359 RDSMYQAILPLRGKIINVEKSRIDKVLKNNEVQAIITAFGTGI-HDEFDIAKLRYHKI 415


>gi|259018176|gb|ACV89680.1| DNA gyrase subunit B [Nocardia cerradoensis]
          Length = 414

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 175/417 (41%), Positives = 250/417 (59%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETAE 118

Query: 214 -----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                        P+ +  T  Y GG+E FV +++R K+ +  + +          +++A
Sbjct: 119 APKHDEGTATPPEPKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 414


>gi|148616470|gb|ABQ96978.1| GyrB [Nocardiopsis rosea]
          Length = 391

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 181/393 (46%), Positives = 253/393 (64%), Gaps = 6/393 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           KSY VSGGLHGVGVSVVNALSS L++ I+R+G+++   +        L     +  +TGT
Sbjct: 1   KSYAVSGGLHGVGVSVVNALSSRLEVEIRRDGHVWRQQYQLTRPTADLSK-DESTEETGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKG 227
           ++TF     IF    +N++TL  R++E +FLN  + I++ D+R       P   T  Y+ 
Sbjct: 60  QITFWADGSIFETTTYNFETLARRMQETAFLNKGLSITIRDERPEFTGDAPVVHTYHYED 119

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+  FV +L+  K P   S I  +   D IS+++AM+WN  Y  +V  F N I   +GGT
Sbjct: 120 GLADFVRHLNAAKDPAHASIISFEEEGDGISVEIAMQWNQSYTSSVHTFANTINTAEGGT 179

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  +  Y       ++ + ++ GDD REG T+++S+K+ DP+F  QTK KL
Sbjct: 180 HEEGFRAALTSIVNRYARDQRLVREKEDNLTGDDIREGLTAIISVKLADPQFEGQTKTKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E +S V+   N+ L  W E +P EAK IV K   A+  R AAR+ARDLTRRK +L+ 
Sbjct: 240 GNTEAKSFVQRVTNEHLRDWFERNPGEAKDIVTKANQAARARVAARQARDLTRRKTLLES 299

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            SLPGKL+DC   +P+KSE+++VEGDSAGGSAK GR    QAILP+RGKILNVE++R D+
Sbjct: 300 TSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPHYQAILPIRGKILNVEKSRIDR 359

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           +L + E+  +ITA+GTG+  D FDI KLRYHKI
Sbjct: 360 ILKNNEVQAIITAMGTGV-HDEFDIEKLRYHKI 391


>gi|269799064|gb|ACZ43810.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 329

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 243/331 (73%), Gaps = 4/331 (1%)

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143
           P D+H+EEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R G
Sbjct: 1   PVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIFRHG 60

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+  ++ +G+ D P+  TG   + TGTE+ F PS + F+   F+YD L  RLRELSFLN
Sbjct: 61  KIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTNTLFHYDILAKRLRELSFLN 119

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLA 262
           S V I LID+R  + +     Y+GGI+AFV YL+ +K P+ +        R++ I++++A
Sbjct: 120 SGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTPINKDAFHFSAEREDGITVEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDD 321
           M+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK    KK K S   GDD
Sbjct: 179 MQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L+ +L E+P EA  +V K
Sbjct: 239 AREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++DAS  R+AAR+ARD+TRRKG LD+A LPG
Sbjct: 299 IIDASRAREAARKARDMTRRKGALDLAGLPG 329


>gi|259018132|gb|ACV89658.1| DNA gyrase subunit B [Nocardia neocaledoniensis]
          Length = 415

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 175/418 (41%), Positives = 249/418 (59%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I  +G  +  ++ +      L + G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSKLEAEIDTDGYHWAQTYKDAKP-GKL-IQGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E   I         
Sbjct: 59  TTIRFWADPEIFETTTYNFETVSRRLQEMAFLNKGLTITLTDQRVTESDVIDEVVSDTAE 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+  FV +++R K+ +  S +   G      +++
Sbjct: 119 APKHAEEGADKPVEHKVKTRTYRYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|259018156|gb|ACV89670.1| DNA gyrase subunit B [Nocardia flavorosea]
          Length = 415

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 179/418 (42%), Positives = 251/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I  +G  +  ++ + +    L V G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDTDGYHWSQTYKDAVP-GQL-VQGDATKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F     +F    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPAVFETTTYNFETVSRRLQEMAFLNKGLTIVLTDERVSATEVTDEVVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+E FV +++R K+P+  S +   G      +++
Sbjct: 119 APKHDEGGEKPALEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFNGKGPGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A++WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 ALQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGI-HDEFDIAKLRYHK 415


>gi|323362399|gb|ADX42112.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362401|gb|ADX42113.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362403|gb|ADX42114.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362405|gb|ADX42115.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362407|gb|ADX42116.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362409|gb|ADX42117.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362411|gb|ADX42118.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
          Length = 415

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 180/418 (43%), Positives = 251/418 (60%), Gaps = 31/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  +   G  +   + +      L V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEVDHAGYHWTQEYKDATP-GKL-VQGEPTTRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWPDPNIFETTSFNFETVARRLQEMAFLNKGLTITLTDERVSDTEVTDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHADAEAQQTEHKVKSRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K    ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           R    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI+KLRYHKI
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGI-HDEFDISKLRYHKI 415


>gi|17535065|ref|NP_496536.1| TOPoisomerase family member (top-2) [Caenorhabditis elegans]
 gi|6175065|sp|Q23670|TOP2_CAEEL RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
           topoisomerase II
 gi|3878527|emb|CAA88867.1| C. elegans protein K12D12.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|3881920|emb|CAA94177.1| C. elegans protein K12D12.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1520

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 139/755 (18%), Positives = 264/755 (34%), Gaps = 69/755 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT-----------------------DGESGLHHMIYEV 48
            D  Q    L+ +  RP  YIG                             GL+ +  E+
Sbjct: 64  EDIYQKKSQLEHILLRPDTYIGSVEHTEKTPMWVYNMEESKLEQRDISYVPGLYKIYDEI 123

Query: 49  LDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D        + I +T+N +    +V +NG+GIP   HK E +   E+I   L   
Sbjct: 124 LVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQHKVEKVYVPELIFGTLLTS 183

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI-KREGNI-YEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+   L    R+    ++ ++I  +  +       
Sbjct: 184 SNYNDDEKKVTGGRNGYGAKLCNIFSTKFTLETSSRDYKSAFKQTWIKNMTRDEEPKIVK 243

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREI 221
           + ++  T++TF P    F +++ + D       R  +++  +  V + L  KR       
Sbjct: 244 STDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGSSKGVAVFLNGKR------- 296

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                 G E +V           +    I   +      +A+  ++   + V  F N+I 
Sbjct: 297 --IPIKGFEDYVQMYTSQFNNEGEPLK-IAYEQVGDRWQVALALSEKGFQQV-SFVNSIA 352

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG H+  +   +  +    +++     K   ++     +      ++  + +P F S
Sbjct: 353 TTKGGRHVDYVADQMVAKFIDSIKRK--LTKTSMNIKPFQIKNHMWVFVNCLIENPTFDS 410

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTR 400
           QTKE +   + +      +++  S         +  I   V+     +       +    
Sbjct: 411 QTKETMTLQQKQFGSTCVLSEKFSK-----AASSVGITDAVMSWVRFKQMDDLNKKCSKT 465

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKI 457
           +   L          D   ++ ++  L L EGDSA   A  G S   R+   + PLRGK+
Sbjct: 466 KTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPLRGKL 525

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIR 514
           LNV      ++  + E+  +I  LG    +     +    LRY K+++M D D DG+HI+
Sbjct: 526 LNVREGNMKQIADNAEVNAMIKILGLQYKKKYETEDDFKTLRYGKLMVMADQDQDGSHIK 585

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS--LSEEI 572
            L++ F     PSLI   F+     P+   T+GK            ++ +N     S +I
Sbjct: 586 GLVINFIHHFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTDNWKSYKI 645

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
           + +       SK              +   D   +  +     A      +    ++   
Sbjct: 646 KYYKGLGTSTSKE-----------AKEYFLDMVRHRIRFKYNGADDDNAVDMAFSKKKIE 694

Query: 633 SLASKLANRLNFIAEKSEKSWHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR 691
                L+  +    ++ ++      + N D         V  + VL  +           
Sbjct: 695 ERKDWLSKWMREKKDRKQQGLAEEYLYNKDTRFVTFKDFVNRELVLFSNLDNERSIPCLV 754

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
                 +   L       +  ++K+      +  I
Sbjct: 755 DGFKPGQRKVLFACFKRADKREVKVAQLAGAVAEI 789


>gi|45736557|dbj|BAD13357.1| DNA gyrase subunit B [Leptospira meyeri]
          Length = 391

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 190/393 (48%), Positives = 277/393 (70%), Gaps = 7/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L++ + ++G IY   +  GI  +P+ + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
            F P + IF+  DF +D L  R REL+FLN  + + + D+R              + GGI
Sbjct: 60  RFKPDATIFTTVDFQFDILSARFRELAFLNKGLVLIIEDRRRGSEGESLLRNEFQFSGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +++ +K P+    I  + ++D++  ++++++++ Y EN+ CFTNNI    GGTHL
Sbjct: 120 VSFVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            G R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV
Sbjct: 179 EGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+  
Sbjct: 239 NAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCSE+DP  SEL+LVEG SAGGSAKQGR R  QAILPL+GKILNVE+AR DK+
Sbjct: 299 GLPGKLADCSEKDPAFSELYLVEGASAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS+EI  L++ALGTGIG+D F+INK+R HKI+
Sbjct: 359 LSSEEIRVLVSALGTGIGEDEFNINKIRNHKIM 391


>gi|119226140|dbj|BAF41049.1| DNA gyrase subunit B [Rhodococcus marinonascens]
          Length = 421

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 181/424 (42%), Positives = 252/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY +SGGLHGVG+SVVNALSS L++ IKR+G  +  ++        L V G A  +TG
Sbjct: 1   SDSYAISGGLHGVGISVVNALSSRLEVDIKRDGYRWTQTYTYSKP-GEL-VKGDATRETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           + V F    DIF    ++++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  STVRFWSDPDIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSAAEVTEDVVSQVAD 118

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             + +     Y GG+E +V +++R K+P+  S +          
Sbjct: 119 APKTAEDESAQAAAPTVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K     + 
Sbjct: 179 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKDKDPKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGS
Sbjct: 299 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|71424000|ref|XP_812644.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70877452|gb|EAN90793.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1476

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 139/742 (18%), Positives = 262/742 (35%), Gaps = 76/742 (10%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           M++      Y     Q     + +  RP MYIG  +  +                     
Sbjct: 1   MANRTVEEIY-----QKKTQHEHILSRPDMYIGTIEPVTEDMWLYDEAENIMKLRKCTWT 55

Query: 40  -GLHHMIYEVLDNAIDESLE---GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGIS 94
            GL+ +  E+L NA D  +    G    I V ++ + G   V +NG GIP   H+E  + 
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPLGQ-TAIKVWIDAERGMVRVYNNGEGIPVQRHREHNLW 114

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFIN 152
             E+I   L     ++    KV+GG +G G  + N  S+  ++     R    + M + N
Sbjct: 115 VPEMIFGYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRN 174

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
            +L++   V   +     T VTF P    F++Q F  D +    R +  +          
Sbjct: 175 NMLESEEPVITPSEGPDYTVVTFYPDFAKFNLQGFGEDMVHMMRRRVYDVAG-------- 226

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
             + +     +       +           + +       +R N   ++ +R ++   + 
Sbjct: 227 -CTDKSLRCYLNDTKIACSSFLEYVDLYPMMGEERKAASYARVNGRWEVCVRVSNIGFQQ 285

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N+I    GGTH+  +   +  ++T   ++       K  V     R      ++ 
Sbjct: 286 V-SFVNSIATTRGGTHVRYITDQVIAKVTEQAKRK-----SKTEVKPHMIRPHLFVFINC 339

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRD 390
            + +P F SQTKE L + + R      +   +   + +  +  + +       +      
Sbjct: 340 LVENPGFDSQTKETLNTPKNRFGSTCDLPPSMIDCILKSSIVERAVEMANSKLTREIASK 399

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSREN 447
                R        LD A+  G       +   +  L L EGDSA      G   + R+ 
Sbjct: 400 LRNADRKQILGIPKLDDANEAGG------KYSHRCTLILTEGDSAKALCTAGLAVKDRDY 453

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
             + PLRGK LNV  A   K+++  E   +   +G  I Q    + +LRY  ++IM+D D
Sbjct: 454 FGVFPLRGKPLNVRDATLKKVMACAEFQAVSKIMGLDIRQKYSGVERLRYGHLMIMSDQD 513

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHN-GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
            DG+HI+ L++       P LI   GFL     P+    +          +  +  +   
Sbjct: 514 HDGSHIKGLIINMIHHYWPDLIKTPGFLQQFITPIVKARKKGR------SDGDDRAISFF 567

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           S+ +  E        I   ++R +        K  ++++ N D+  ++        +   
Sbjct: 568 SMPDYFEWKNAIGDGIRNYEIRYYKGLGTSGAKEGREYFENIDRHRLDFVHEDATDDARI 627

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686
                     +  + +      +  +   + N          R V+    ++   I    
Sbjct: 628 VMAFAKDKVEERKHWITQFKANTNVNESMNYN---------VRTVRYSEFVDKELILFSV 678

Query: 687 SKYKRIFSNRIEENYLTILSLI 708
           +  +R   + I+        +I
Sbjct: 679 ADCERSIPSVIDGLKPGQRKII 700


>gi|308153116|dbj|BAJ22147.1| DNA gyrase subunit B [Kineococcus aurantiacus]
          Length = 407

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 174/410 (42%), Positives = 256/410 (62%), Gaps = 21/410 (5%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG SVVNALS+ L + ++R+G  +  S+ +G+   PL   G A ++TG
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSTRLDVEVRRQGFAWRQSYEHGVPLAPLEK-GEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------SPE 217
           T +TF    DIF   D++Y+TL+   ++ +FLN  + ++L D+R                
Sbjct: 60  TTITFWADGDIFETTDYSYETLRTSFQQRAFLNKGLTLTLKDERAHPEDEAAEGSTDEKP 119

Query: 218 PREITMFYKGGIEAFVSYL--DRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENV 273
            RE++  Y  G+  +V ++   +  +PL ++ I ++    +  I++++AM+W   Y E V
Sbjct: 120 QREVSYRYDEGLIDYVKHINAQKKNEPLHETVISLEAEDKDKGIAVEIAMQWTTAYSEAV 179

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR-SVIGDDCREGFTSVLSI 332
             + NNI   +GGTH +G R+ALT  +  Y   +  +   +  S+ G D REG T+V+S+
Sbjct: 180 FTYANNINTSEGGTHEAGFRTALTNLVIDYARSAKPAILKENESLDGSDIREGLTAVISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++  R+ V+S V + L  W + +P EA  I KK   AS+ R AA
Sbjct: 240 KLSEPQFEGQTKTKLGNTLARTFVQSQVREHLGHWFQANPKEAWTIAKKAQSASIARQAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+   RK +L+  SLPGKL DC   +P + E+F+VEGDSAGGSA +GR    QAILP
Sbjct: 300 RKAREA-SRKSLLERNSLPGKLKDCQSNNPAECEVFIVEGDSAGGSATRGRDPRTQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +RGKILNVE+AR D+ L +QE+  LITA GTGIG+D F+++KLRYHKIII
Sbjct: 359 IRGKILNVEKARLDRALGNQEVQALITAFGTGIGED-FNLDKLRYHKIII 407


>gi|259018170|gb|ACV89677.1| DNA gyrase subunit B [Nocardia asteroides]
          Length = 415

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 176/418 (42%), Positives = 249/418 (59%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS L+  I  +G  +   + +      L V G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKLEAEIDNDGYHWTQVYKDAKP-GKL-VQGEATQRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E   I         
Sbjct: 59  TTIRFWADPEIFETTTYNFETVSRRLQEMAFLNKGLTITLTDQRVSESDVIDEVVSDTAE 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+  FV +++R K+ +  S +   G      +++
Sbjct: 119 APKHAEEGVEKPVEHKVKTRTYHYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|329910863|ref|ZP_08275398.1| DNA gyrase subunit B [Oxalobacteraceae bacterium IMCC9480]
 gi|327546068|gb|EGF31140.1| DNA gyrase subunit B [Oxalobacteraceae bacterium IMCC9480]
          Length = 305

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 99/306 (32%), Positives = 157/306 (51%), Gaps = 6/306 (1%)

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDGAHIRTLLLT  +RQMP+L+  G +YI +PPLY +  G+  +Y+KD+     Y
Sbjct: 1   MTDADVDGAHIRTLLLTLLYRQMPALVERGHVYIAQPPLYKVKHGRDERYLKDDIEEAAY 60

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           ++  +L++   +  +    IS + L   +      + +I       D   +   +     
Sbjct: 61  MMQIALNDAALIPYEQAEPISGDALAELVRQYNTANAIITRLARAIDNAALTAIMTGVTL 120

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682
           +  + +    S A+ LA  +N  A +         +   + V+R+  G  +  V++   +
Sbjct: 121 DLSTPESAASSAAAMLAT-INDPAVEILVRSDDLSDKHQLRVQRMYHGNVKVSVIDADFV 179

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK---ITGPCSLLDTIFSIGRKGISMQR 738
                      +   +        +    G++IK   I     ++  +     +G+S QR
Sbjct: 180 SGPDYAVLANAAATFKGLLGDGAMVRRGTGERIKEIRINDFHQVMAWLREEAERGVSKQR 239

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN SQLWETT++P  R LL+V+I DA  AD +F+ LMGD+VEPRR FI+ N+L 
Sbjct: 240 YKGLGEMNPSQLWETTMDPAVRRLLKVQIDDAIAADQIFTTLMGDDVEPRRAFIEANALQ 299

Query: 799 S-ALDI 803
           +  +DI
Sbjct: 300 AGNIDI 305


>gi|261343286|gb|ACX70144.1| DNA gyrase subunit B [Nocardia coeliaca]
          Length = 415

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 175/418 (41%), Positives = 251/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L + IK +G  ++ ++ +      L V G    +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKP-GEL-VQGDPTKETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
           T V+F    +IF    +N++T+  RL+E++FLN  + I+L D+R+               
Sbjct: 59  TTVSFWADPEIFETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPK 118

Query: 217 ---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+E +V ++++ K P+  S +          +++
Sbjct: 119 SAAEEAEEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K     + GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K
Sbjct: 239 IREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP+KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|300709311|ref|XP_002996821.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
 gi|239606147|gb|EEQ83150.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
          Length = 713

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 134/585 (22%), Positives = 229/585 (39%), Gaps = 66/585 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE---------------------- 38
           M+  I+ +       Q    L+ +  RP  YIG  + E                      
Sbjct: 1   MTKTIEET------YQKKTPLEHILLRPDTYIGSVEKEVQNMYIWDEANGKIVSKNISFV 54

Query: 39  SGLHHMIYEVLDNAIDESLEGY-ADIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL+ +  E++ NA D  +       I V +N  D   +V ++G+G+P  +H +E +   
Sbjct: 55  PGLYKIFDEIIVNAADNKIRDPKMKNIKVEINKEDNIISVYNDGKGVPIKIHSQEKVYVP 114

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGI 154
           E+I  +L     ++ K  KV+GG +G G  + N  SS   +    +  G IY+  F N +
Sbjct: 115 ELIFGQLLTSSNYDDKEKKVTGGRNGYGAKLCNIFSSEFVVETSDQEVGKIYKQVFKNNM 174

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLI 211
                    +      T++TF P    F +++ + D     + R+ +LS +  +V + L 
Sbjct: 175 TVTGKPEIKTYKKSDFTKITFKPDLVRFGMKNLDDDIVSLFKKRVYDLSGIVKNVNVYLN 234

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           +++                          K  +     +     N   +LA   ++   +
Sbjct: 235 EQKIEIKNFKDYV----------------KLYLPEDAVVVHEIINERWELAFTTSEEQFQ 278

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N+I    GG+H++ +   LT  I   ++K   S     +V     +      ++
Sbjct: 279 QV-SFVNSISTSKGGSHVNHVVEQLTDPIIEALKKKKIS-----NVKPFQVKSSMFLFIN 332

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             + +P F SQTKE L         +          + ++      I   V      ++ 
Sbjct: 333 SLIDNPAFDSQTKENLTLRVGAFGSKCEPLKDFIDKVIKNTEVVTKIADFV----KAKED 388

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQ 448
           A   +   ++KG + I  L             +  L+L EGDSA      GRS    E  
Sbjct: 389 AALKKTDGKKKGRIIIDKLEDAKW-AGTAKSNECTLYLTEGDSAKTMVMSGRSIVGTERL 447

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            + PLRGK+LNV  A   ++  + EI  +   LG    +   D + LRY  ++I+TD D 
Sbjct: 448 GVYPLRGKLLNVREATNKQISENVEIIAIKKILGLQHAKTYTDTSSLRYGHVMIITDQDH 507

Query: 509 DGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQY 552
           DG+HI+ LL+ FF    PSL+   GFL     P+      +    
Sbjct: 508 DGSHIKGLLINFFDYWYPSLLKIPGFLQEFITPIVRGKNSRGEIV 552


>gi|110624477|dbj|BAE98185.1| DNA gyrase B subunit [Shewanella algidipiscicola]
          Length = 370

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 217/373 (58%), Positives = 290/373 (77%), Gaps = 4/373 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ I+R+G +YE  + +G+ D P+ V G A   TGTE+ F PS + 
Sbjct: 1   GVGVSVVNALSEKLQMTIRRDGKVYEQFYTHGVPDAPISVVGEAA-TTGTEIRFWPSHET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  +F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+ +K 
Sbjct: 60  FTDVEFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKT 117

Query: 242 PLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR +
Sbjct: 118 PVNKEVFHFIQERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRNL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+++   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NAYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + LS +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+
Sbjct: 238 GEQLSDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 298 DPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 357

Query: 481 LGTGIGQDSFDIN 493
           LG GIG+D +D +
Sbjct: 358 LGCGIGRDEYDPD 370


>gi|86169561|gb|ABC87020.1| DNA gyrase subunit B [Leuconostoc citreum]
          Length = 376

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 174/376 (46%), Positives = 250/376 (66%), Gaps = 2/376 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-T 169
              YKVSGGLHGVG SVVNALS+ L +++ R+G +Y M F  G ++  +V          
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTNLDVKVVRDGQVYYMDFKVGRVNTRMVKLDEKPTIAR 60

Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           GT V F P +DIF     FNY+TL  R+REL+FLN  ++IS+ D R+  P   +  Y+GG
Sbjct: 61  GTIVHFKPDADIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRAETPMTESFHYEGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I+ +V YL+  K  +   P+ ++G  + I ++ A+++     +++  FTNNI   +GGTH
Sbjct: 121 IKEYVKYLNAEKVVVFPEPVYVEGEENGIVVEAALQYTTDVKDSLRTFTNNINTYEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G ++ALTR I  Y  K+   K++  S+ G+D REG T+++SIK PDP+F  QTK KL 
Sbjct: 181 ETGFKTALTRVINDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 240

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +S+ R   +   ++  S ++ E+P  AK IV+K + A   R AA+RAR++TR++  L+I 
Sbjct: 241 NSDARQATDRMFSETFSRFMMENPAVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIG 300

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLAD +  DP  SELF+VEGDSAGGSAKQGR+R  QAILP+RGKILNVE+A  DK+
Sbjct: 301 NLPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVEKATLDKV 360

Query: 469 LSSQEIGTLITALGTG 484
           L+++EI +L TA+GTG
Sbjct: 361 LANEEIRSLFTAMGTG 376


>gi|327200373|gb|AEA36066.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 253/358 (70%), Positives = 306/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R+G I EMSF +G+ D PL VTG AG++TGTEV+F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGSETGTEVSF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +PSS+ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV Y
Sbjct: 61  MPSSETFTMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVRQEEMLYDGGLEAFVKY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+  +D  ++++AM WN+ YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVDKPVSIRSEKDGTTVEVAMWWNESYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY E S  +K++K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ L  WLEEHP +AK++V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|62085702|gb|AAX63243.1| DNA gyrase subunit B [Gordonia soli]
          Length = 420

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 187/423 (44%), Positives = 252/423 (59%), Gaps = 35/423 (8%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SY VSGGLHGVG+SVVNALS+ ++L I   G  ++  +   I   PL   G A
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIDHGGYHWDQVYTRAIP-GPL-NQGEA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------- 216
              TGT V F P  DIF   +F+ +T+  RL+E++FLN  + I+L D+R           
Sbjct: 59  TKKTGTTVRFWPDGDIFETTNFSAETIARRLQEMAFLNKGLTITLTDRRVAAADPVGDSD 118

Query: 217 -----------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
                                  +P+  T  Y  G+  ++ +L+R K+P+  S +   G 
Sbjct: 119 DDREGEDAAERIKSEEEKATEAAKPKTRTYHYPDGLVDYIKHLNRTKQPIHTSVVGFTGK 178

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
            +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+ 
Sbjct: 179 GEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEK 238

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              + GDD REG  +V+S+K+ DP+F  QTK KL ++EVRS V+   N+ L  W E +P 
Sbjct: 239 DGKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVRSFVQRMSNEHLGHWFESNPA 298

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EAK I+KK +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E++LVEGD
Sbjct: 299 EAKTIIKKAVDSAQARIAARKARELVRRKTATDIGGLPGKLADCRSNDPAKCEVYLVEGD 358

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI 
Sbjct: 359 SAGGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIA 417

Query: 494 KLR 496
           KLR
Sbjct: 418 KLR 420


>gi|226326916|ref|ZP_03802434.1| hypothetical protein PROPEN_00776 [Proteus penneri ATCC 35198]
 gi|225204753|gb|EEG87107.1| hypothetical protein PROPEN_00776 [Proteus penneri ATCC 35198]
          Length = 153

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 94/138 (68%), Positives = 117/138 (84%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+ D I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDEIIV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHSDNSVSVRDDGRGIPTGIHQEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSSWLKLRIKREGN 144
           VVNALS  L+L I R+G 
Sbjct: 122 VVNALSEKLELTIHRDGK 139


>gi|211927103|dbj|BAG82804.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 175/424 (41%), Positives = 251/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ +++ I  +G  +  ++ +     PL V G   ++TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVEVDINVDGYRWSQTYDHAKP-GPL-VQGEPTSETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T V F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTVRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTDDVVSPTAE 118

Query: 223 ------------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                                     Y GG+E +V +++R K+P+  S +          
Sbjct: 119 APKTASETEEEAAAPKAPKVKSRIYHYPGGLEDYVRFINRTKQPIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K     + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ ++ W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 VTKAVSSAQARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|199974915|gb|ACH92122.1| DNA gyrase subunit B [Thiothrix fructosivorans]
          Length = 369

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 220/371 (59%), Positives = 288/371 (77%), Gaps = 2/371 (0%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L+L I+R G +++  +  G    PL + G     TGT V F PS++IF++ +
Sbjct: 1   VVNALSADLELTIRRNGKLHQQMYKLGDPVAPLAIIGDTE-GTGTSVRFWPSAEIFALTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V+I LID+R  E RE    Y+GGI+AFV++L+R+K P+  +
Sbjct: 60  FHYDILAKRLRELSFLNSGVRIHLIDRR-GEGREDVFEYEGGIKAFVAHLNRNKSPIHNN 118

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I     RD + +++A++WND Y EN+ C+TNNIPQ+DGG+HLSG R+ALTR + SY+E 
Sbjct: 119 IIYFTTERDGVGVEVALQWNDSYQENIFCYTNNIPQRDGGSHLSGFRAALTRTLNSYIES 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +KK+K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +VE+ +N+ L  
Sbjct: 179 AGLAKKEKISPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVEAAMNERLGE 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E P EAK+I  K+++A+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  SE
Sbjct: 239 FLLESPSEAKLIAGKMIEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPALSE 298

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGGSAKQGR R  QAILPL+GKILNVERARFDKM+SSQE+GTLI ALG GIG
Sbjct: 299 LFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMISSQEVGTLIIALGCGIG 358

Query: 487 QDSFDINKLRY 497
           ++ ++I+KLRY
Sbjct: 359 REEYNIDKLRY 369


>gi|19912057|dbj|BAB88340.1| DNA gyrase subunit B [Cytophaga sp. T-588]
          Length = 391

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 183/392 (46%), Positives = 252/392 (64%), Gaps = 10/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS  LK +  REG I+E  +  G    P+   G +  +TGT VTF
Sbjct: 1   VSGGLHGVGVSCVNALSKHLKAQSTREGKIWEQEYERGKTQYPVKSVGESK-ETGTVVTF 59

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIE 230
            P   IF+    ++Y+TL +R+REL++LN  + ISL D+R+     E    T   + G++
Sbjct: 60  TPDDTIFTQTTEYSYETLANRMRELAYLNKGITISLTDRRNKDEKGEFINETFHSEEGLK 119

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            F+ +LD  + PL+Q+ I ++G ++ I +++AM +N GY EN+  + NNI   +GGTHLS
Sbjct: 120 EFIRFLDETRDPLIQTVIAMEGEKNGIPVEVAMIYNTGYSENLHSYVNNINTHEGGTHLS 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  LT  +      S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + 
Sbjct: 180 GFRRGLTSTLKKVCGHSGMLDKLKFEISGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNR 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV S V   V++ L+ +LEEHP +AK IV+KV  A+  R AA +AR++ +RK  + +  L
Sbjct: 240 EVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMSVGGL 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  
Sbjct: 300 PGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRMFQAILPLRGKILNVEKAMQHKVFE 359

Query: 471 SQEIGTLITALGTGIGQDSFDI----NKLRYH 498
           ++EI  + TALG  IG +         KLRYH
Sbjct: 360 NEEIKNIYTALGVTIGTEEDSKALNLEKLRYH 391


>gi|259018102|gb|ACV89643.1| DNA gyrase subunit B [Nocardia wallacei]
          Length = 411

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 174/414 (42%), Positives = 248/414 (59%), Gaps = 28/414 (6%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ +   I R+G  +   + +      L V G     TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMVTEIDRDGFHWSQEYKDSKP-GKL-VKGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T   F     IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTQRFWADPAIFETTTYNFETIARRLQEMAFLNKGLTITLTDERVSDAEITDEVVSDTAE 118

Query: 215 ---------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
                      + +  T  Y GG+  FV +++R K+P+  + +   G      +++AM+W
Sbjct: 119 APKADAEPVEHKVKTRTYHYPGGLADFVKHINRSKQPIHNTVVSFTGKGTGHELEVAMQW 178

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD REG
Sbjct: 179 NSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKDKDGNLTGDDIREG 238

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +++S+K+ DP+F  QTK KL ++EV+S V    N+ L+ WLE +P +AK IV+K + +
Sbjct: 239 LAAIVSVKVSDPQFEGQTKTKLGNTEVKSFVHRTCNEHLAHWLEANPADAKTIVQKAVSS 298

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AAR+AR+L RRK   D+  LPGKLADC  +DP+ SE+++VEGDSAGGSAK GR  
Sbjct: 299 AQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGSAKSGRDS 358

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
             QAILP+RGKI+NVE++R DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 MYQAILPIRGKIINVEKSRIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 411


>gi|259018172|gb|ACV89678.1| DNA gyrase subunit B [Nocardia cyriacigeorgica]
 gi|323362413|gb|ADX42119.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
          Length = 415

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 179/418 (42%), Positives = 251/418 (60%), Gaps = 31/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  +   G  +   + +      L + G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEVDHAGYHWTQEYKDATP-GKL-IQGEPTTRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWPDPNIFETTSFNFETVARRLQEMAFLNKGLTITLTDERVSDTEVTDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHADAEAQQTEHKVKSRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K    ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           R    QAILPLRGKI+NVE+AR DK+L + E+  +ITA GTGI  D FDI+KLRYHKI
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGI-HDEFDISKLRYHKI 415


>gi|51571611|emb|CAH18972.1| gyrase B [Corallococcus coralloides]
          Length = 367

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 197/370 (53%), Positives = 263/370 (71%), Gaps = 3/370 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGV+ VN LS W K+R++R G IYE S+  G+ +      G   +  GT + F
Sbjct: 1   VSGGLHGVGVTCVNFLSEWFKVRVQRAGKIYEQSYARGVSNGSPQEVG-TTDKRGTTIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV Y
Sbjct: 60  KPDSTVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISSFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++A
Sbjct: 118 LNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +
Sbjct: 178 LTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGL 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLA
Sbjct: 238 VEQMVNDQLASFLEENPPLAKKVVVKIGDACRARLAARKARETVRRKGVLDGGGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI 
Sbjct: 298 DCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIV 357

Query: 476 TLITALGTGI 485
           TLITALGTGI
Sbjct: 358 TLITALGTGI 367


>gi|308153128|dbj|BAJ22153.1| DNA gyrase subunit B [Mycobacterium sp.]
          Length = 421

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 184/422 (43%), Positives = 252/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ L+  I R+G  +   +   +    L   G + N TG
Sbjct: 3   NSGYNVSGGLHGVGVSVVNALSTRLEATILRDGYEWFQYYDRSVP-GTLKQGGPS-NKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    DIF   +++++T+  RL+E++FLN  + I L D+R                
Sbjct: 61  TTIRFWADPDIFETTEYDFETVARRLQEMAFLNKGLTIDLTDERVTAEEVVDDVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +  T  Y GG+  +V +++R K P+ QS I   G      ++
Sbjct: 121 APKTADEKAAEAAGPHKVKHRTFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K+   ++ GD
Sbjct: 181 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTTVVNKYAKDKKLLKEKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ LS W E +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP  SE+++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSTDPVLSEVYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI
Sbjct: 361 SGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|327200369|gb|AEA36064.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 253/358 (70%), Positives = 305/358 (85%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKL+I+R+G I EMSF +G+ D PL VTG AG +TGTEV+F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGTETGTEVSF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +PSS+ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV Y
Sbjct: 61  MPSSETFTMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVRQEEMLYDGGLEAFVKY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+  +D I++++AM WN+ YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVDKPVSIRSEKDGITVEVAMWWNESYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY E S  +K++K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ L  WLEEHP +AK++V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERD  KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDLAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|308153050|dbj|BAJ22114.1| DNA gyrase subunit B [Mycobacterium obuense]
          Length = 419

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 177/421 (42%), Positives = 248/421 (58%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I ++G  +  ++   +    L   G     TG+
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIHKDGFEWHQTYDKSVP-GTLRK-GEPSKKTGS 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTTYDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDIVSDHAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K  +  S I   G      +++
Sbjct: 120 PKSAEEKAAEKAAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGPGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|283132387|dbj|BAI63599.1| DNA gyrase subunit B [Leptospira genomosp. 1 serovar Pingchang]
          Length = 391

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 187/393 (47%), Positives = 277/393 (70%), Gaps = 7/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L + + ++G  Y   +  GI  +P+ + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLIVEVHQKGKFYTQKYEKGIPVSPVEMKGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
            F P + IF+  DF +D L  R REL+FLN  + + + D+R              + GGI
Sbjct: 60  RFKPDASIFTTVDFQFDVLSARFRELAFLNKGLVLIVEDRRRGSEGENLLRNEFQFSGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +++ +K P+    I  + ++D++  ++++++++ Y E++ CFTNNI    GGTHL
Sbjct: 120 VSFVEHINENKHPMH-KVIHFERNKDDVLAEISIQYSETYTESIFCFTNNINNNLGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            G R+ALTR +  +++K     K   +   G+D +EG T+V+SIK+P P+F+SQTKEKLV
Sbjct: 179 EGFRAALTRTLNDFLKKDTVLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+  
Sbjct: 239 NAEIKGIMQTLTSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC+E+DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+
Sbjct: 299 GLPGKLADCAEKDPALSEIYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 LSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|294622314|ref|ZP_06701357.1| DNA topoisomerase 4 subunit B [Enterococcus faecium U0317]
 gi|291598206|gb|EFF29304.1| DNA topoisomerase 4 subunit B [Enterococcus faecium U0317]
          Length = 200

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 113/174 (64%), Gaps = 3/174 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
              N+ Y+  SIQ+L+GL+AV+KRP MYIG TD   GLHH++YE++DNA+DE+L GY   
Sbjct: 14  KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT++ D S TV+D+GRG+P  +H   GI   EVI T LHAGGKF Q  YK SGGLHGV
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFL 176
           G SVVNALS WL + I R+G  Y+  F N G  D  L   G     TG    F 
Sbjct: 132 GASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKQTGRLSIFY 185


>gi|25990061|gb|AAN74970.1| DNA gyrase subunit B [Mesoplasma entomophilum]
          Length = 391

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 173/394 (43%), Positives = 246/394 (62%), Gaps = 6/394 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTE 172
           YK+SGGLHGVG SVVNALS ++ + +KREG I+   F  G      + + G   N+TGT 
Sbjct: 1   YKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQVFSGGGTQQTEIEIIGET-NETGTT 59

Query: 173 VTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F P  +IF    +F+Y+T+++++++LS+LN  + I L D R  +  E       GI  
Sbjct: 60  VRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELNDLRIDKHVEYHF--PNGILD 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           +V   +  K  +  S   +    D+I +++A+++N  Y EN++ F NNI   +GGTH  G
Sbjct: 118 YVKEKNETKPKINPSIFYVDDKHDDIEVEVALQYNAEYQENLITFVNNINTHEGGTHEDG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR +L R I  Y EK     K       DD +EG   ++SI+  DP++  QTK KL + +
Sbjct: 178 LRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIVSIRHTDPQYEGQTKTKLANPD 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            +  V++ V D    +L + P +AK I+ K  +A   R AA+RAR+ TRRK  LD  SLP
Sbjct: 238 AKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNANAQKARIAAQRAREETRRKSALDTFSLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  +DP+ +EL+LVEGDSAGGSAK GR+R  QAILPLRGK+LNVER    +  ++
Sbjct: 298 GKLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAILPLRGKVLNVERVAEVRAFAN 357

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
            EI +++TA+GTGI +D  D++KLRY KI+IMTD
Sbjct: 358 NEIKSIVTAIGTGIKEDI-DLSKLRYGKIVIMTD 390


>gi|308152585|dbj|BAJ22271.1| DNA gyrase subunit B [Mycobacterium sp.]
          Length = 419

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 179/421 (42%), Positives = 249/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I ++G  +  ++   +    L   G      GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIHKDGFEWHQTYDKSVP-GTLRK-GEPSKKNGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTVYDFETIARRLQEMAFLNKGLTIELTDERVAAAAVVDEVVSDHAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y  G+  FV +++R K  + QS I   G  D   +++
Sbjct: 120 PKSAEEQAAEAAAPQKVKHRVFHYPDGLVDFVKHINRTKSAIQQSIIDFGGKGDGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+ + ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEANLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 240 IREGLAAVVSVKVRQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARVAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNNEVQAIITALGTGI-HDEFDISKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|188529799|gb|ACD62585.1| GyrB [Micromonospora aurantiaca]
          Length = 393

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 182/397 (45%), Positives = 259/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G A + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYHHSKP-TPLEK-GEATDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGA-EKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|325187394|emb|CCA21933.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325190307|emb|CCA24783.1| topoisomerase putative [Albugo laibachii Nc14]
          Length = 1499

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 132/604 (21%), Positives = 231/604 (38%), Gaps = 70/604 (11%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           S N           Q    L  +  RP  Y+G  D  +                      
Sbjct: 63  SKNASQKQTIEQIYQKKTQLQHILLRPDTYVGSIDPVTQNMWIYDEEASKMHLKKITFVP 122

Query: 40  GLHHMIYEVLDNAIDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGIS 94
           GL+ +  E++ NA D     +     + + VT++   G  +V +NG+GIP   HKE  + 
Sbjct: 123 GLYKIFDEIIVNACDNKQRDASM---NTLRVTIDPTAGEISVWNNGKGIPVVQHKEHEVY 179

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFIN 152
             E+I   L  G  F+ K  K +GG +G G  + N  S+   +    +     Y+  F +
Sbjct: 180 VPELIFGHLLTGSNFDDKKKKTTGGRNGYGAKLANIFSTKFIVETADKNVKKRYKQVFSD 239

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLREL-SFLNSSVQI 208
            +         S      T +TF P    F +   + D     + R+ ++    + S+Q+
Sbjct: 240 NMSQKESPAITSWNKQDFTCITFRPDLKRFKMDRLDDDIVSLFKKRVFDIAGVTDKSLQV 299

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            L +++               E+    +   K             R  +    +   +DG
Sbjct: 300 YLNEEKITCKSFPDYISLYTGESAKEDVIFDKPT----------ERWQVGFGPS---DDG 346

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           +    + F N I    GG H++ +   +  ++ + V+K    +  K +      +   T 
Sbjct: 347 F--QQISFVNGICTTRGGQHVTYIADQVVNKLVAAVKKRNKGEAVKPNY----IKNMMTI 400

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            +S  + +P F SQTKE L +          ++D     +E+       IV++V+  +  
Sbjct: 401 YVSALIDNPAFDSQTKETLTTRPSSFGSTHSLSDKFLKQIEKSG-----IVERVVSFAKF 455

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPK--KSELFLVEGDSA-----GGSAKQ 441
           +  A   R   +      +  +            +  K  L L EGDSA     GG +  
Sbjct: 456 KQTAELQRKGAKGGNRSKLTGITKLDDANYAGTAEGRKCTLILTEGDSAKSLTIGGLSVV 515

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR      + PL+GK+LNV  A   ++L ++EI  ++  LG   GQ       LRY  ++
Sbjct: 516 GRD--YYGVFPLKGKLLNVREASHSQILKNEEIQNVVKILGLKYGQVYESTKSLRYGHLM 573

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
           IM D D DG+HI+ L++ F     PSL+   GF++    P+    +G   +        E
Sbjct: 574 IMADQDHDGSHIKGLVINFIHHFWPSLLQVEGFMHEFITPIVKCAKGSKKEVFYTMPEYE 633

Query: 561 DYLI 564
            + +
Sbjct: 634 AWRL 637


>gi|302895481|ref|XP_003046621.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
           77-13-4]
 gi|256727548|gb|EEU40908.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
           77-13-4]
          Length = 1677

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 144/711 (20%), Positives = 255/711 (35%), Gaps = 52/711 (7%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGL 41
                +Y     Q L  L  + KRP  YIG  +                         GL
Sbjct: 116 KTATETY-----QKLTQLQHIIKRPDTYIGSVEMTQQTMWVYNKETSLMEYRPVTFVPGL 170

Query: 42  HHMIYEVLDNAIDESLE-GYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99
           + +  E+L NA D          + + ++   G  +V +NG+GIP  +H++E I   E++
Sbjct: 171 YKIFDEILVNAADNKQRDKSMTYMKINIDRATGVISVENNGKGIPIVIHEKEKIYIPELV 230

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDN 157
              L AG  F+    K  GG +G G  + N  S+  +L  +    G  Y   + + +   
Sbjct: 231 FGHLLAGSNFDDDEKKTVGGRNGYGAKLCNVFSTEFQLECQDNEHGKRYRQVWTDNMQKM 290

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ----HRLRELSFLNSSVQISLIDK 213
                 S+       +TF P    F ++D   D L+     R+ +++     V++ L  +
Sbjct: 291 QKAKITSSKTADFVRITFKPDYKRFGMEDGIDDDLERLLYRRVYDMAGTVRGVKVHLNGE 350

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
                           ++        +       + +   + +   ++    +DG  + V
Sbjct: 351 VLKLKDFKGYCDL-YAKSIAKERMDEEGGTPTCSVEMDKDKGHPRWEVGFAVSDGTFQQV 409

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GG+H+  + + +T     Y+ K+   KK   ++     +      ++  
Sbjct: 410 -SFVNSIATTSGGSHVDYIANQVTA----YLLKALNKKKKGHTLKQSHLKNHIFIFVNCL 464

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P F+SQTKE + +   +          L     +   +++ I   +  A     A +
Sbjct: 465 IDNPAFNSQTKEHMTTKTSQF----GSKCQLGEDFLKKVAKSEAIQNIMDFAER--KADK 518

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAI 450
                   K      +   +      R   +  L L EGDSA G A  GR     +   +
Sbjct: 519 MLAKSDGNKRSRVSNAKLVEANLAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGV 578

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            PLRGK+LNV  A  D++  +QEI  +   LG    Q   D   LRY  ++IM D D DG
Sbjct: 579 FPLRGKLLNVRDASVDQITKNQEIQNIKQFLGLKHKQVYTDTKSLRYGHLMIMADQDHDG 638

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           +HI+ LL+ F   Q PSL+     +     P+  + +G + +     +S       +   
Sbjct: 639 SHIKGLLINFLQVQFPSLLKVPDFFREFITPIVKVWQGPNPKKPLRLKSFFTQPEYEEWK 698

Query: 570 EEIELFCDSKGVISKNDLRNFI-DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
           E+ +             L     +DA      + D     +    E+A +  +   +   
Sbjct: 699 EDHKDDMGRWHSKYYKGLGTSSNEDAQVYFTNLDDHLKEFEVMKPEEADLLDLAFSKKKA 758

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           +                      S+   IN   IL            VL+G
Sbjct: 759 DARKEWLGNFVPGTYLDHSTKSISYSDFINRELILFSMADNMRSIPSVLDG 809


>gi|327200409|gb|AEA36084.1| DNA gyrase subunit B [Rhizobium undicola]
          Length = 358

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 253/358 (70%), Positives = 300/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L LRI+R G ++EMSF +G+ D PL VTGS    +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVKLSLRIRRSGKVHEMSFTHGVADAPLAVTGSYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS++ F+  +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV Y
Sbjct: 61  LPSAETFTKTEFDYGTLEHRLRELAFLNSGVRILLTDKRKSDIRQEEMIYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KK L+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRSKKSLVDKPVYIKGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY + S   KK+K S+ GDDCREG ++VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYADSSGIIKKEKVSLTGDDCREGLSAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ VN+ LS WLEEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VENLVNEALSTWLEEHPSEAKILVSKVVEAAVAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDS GGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPSKSELFLVEGDSXGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|51571601|emb|CAH18967.1| gyrase B [Corallococcus coralloides]
          Length = 367

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 195/370 (52%), Positives = 263/370 (71%), Gaps = 3/370 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGV+ VN LS W K+RI+R G +YE S+  G+ +      G   +  GT + F
Sbjct: 1   VSGGLHGVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVANGSPQEVG-TTDKRGTMIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P + +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    ++GGI +FV Y
Sbjct: 60  KPDTQVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFEGGISSFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++A
Sbjct: 118 LNKAKEALHDKPVFIKTEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +
Sbjct: 178 LTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGL 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VND L+++LEE+P  AK +  K+ DA   R AAR+AR+  RRKGVLD   LPGKLA
Sbjct: 238 VEQMVNDQLASFLEENPPLAKKVAAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI 
Sbjct: 298 DCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIV 357

Query: 476 TLITALGTGI 485
           TLITALGTGI
Sbjct: 358 TLITALGTGI 367


>gi|163256313|dbj|BAF95667.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3G]
          Length = 268

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 156/270 (57%), Positives = 194/270 (71%), Gaps = 2/270 (0%)

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYK
Sbjct: 1   ALAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYK 60

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTF
Sbjct: 61  VSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGRRGTEVTF 120

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV Y
Sbjct: 121 LASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGGVEEFVKY 180

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R A
Sbjct: 181 LDRNKKAIVPAPIMVRADANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGA 240

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           LTRQ+  Y E +  +KK+K ++ GDDCREG
Sbjct: 241 LTRQVNGYAEAN--AKKEKIALTGDDCREG 268


>gi|211927073|dbj|BAG82789.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 419

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 178/421 (42%), Positives = 249/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALSS L+  ++ +G  +  ++   +    L   G     TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSSRLEADVRTDGYEWFQTYDRSVP-GTLRQ-GEKTKKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTTYDFETIARRLQEMAFLNKGLTIELTDERVTPEQVVDEVVSDTAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K  +  S I   G  +   +++
Sbjct: 120 PKSAEEKAAEAVAPHKVKHRVFHYPGGLVDFVKHINRTKNSIQPSVIDFDGKGEGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDANLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFESNPTEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|321457974|gb|EFX69050.1| hypothetical protein DAPPUDRAFT_329527 [Daphnia pulex]
          Length = 1572

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/630 (20%), Positives = 229/630 (36%), Gaps = 69/630 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +                        GL+ +  E+L NA 
Sbjct: 45  YQKKSQLEHILLRPDTYIGSVEPVKDVMWVYEEDAGMIQREITYVPGLYKIFDEILVNAA 104

Query: 54  DESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D  +     D I V ++  +   T+ +NG+GIP   HKEE +    +I   L     +N 
Sbjct: 105 DNKVRDPKMDTIKVDIDPKENVITIYNNGKGIPVVEHKEEKMYVPSLIFGHLLTSSNYND 164

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  KV+GG +G G  + N  S+  +L    K E   ++ ++ + +         +     
Sbjct: 165 EEEKVTGGRNGYGAKLCNIFSTSFELETASKDERKKFKQTWTDNMTKAGTPKIVNYNEAD 224

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T++TF P    F +   + DT+     R  +++     V++ L  KR P          
Sbjct: 225 FTQITFSPDLAKFKMDSLDKDTVALLSRRAFDVAASTRGVKVFLNGKRLPIKNFKDYVDL 284

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
                 +   +      ++        R  I++  +           + F N+I    GG
Sbjct: 285 C-----LKGKEDDDGAQLKCVYEAVSERWEIAVAPS-----DKGFQQVSFANSIATTKGG 334

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +++ +  +++K   S     +V     +      ++  + +P F SQTKE 
Sbjct: 335 RHVDYVTEIVSKYLQEFLKKKNKSG---INVKPHQIKNHLWIFVNCLIVNPTFDSQTKEN 391

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           +             ++     L +  +    I   +  A              +++  L 
Sbjct: 392 MTLQAKSFGSTCKPSEKFFNALNKSGV----IEGVMTWAKFKAQTELNKACSGKKQTKLK 447

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    +   +      L L EGDSA      G    GR +    + PL+GK+LNV 
Sbjct: 448 GVPKLEDANNAGTKHSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLKGKVLNVR 505

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLL 518
            A   ++L + EI  LI  LG    +    +     LRY +++IMTD D DG+HI+ LL+
Sbjct: 506 EATHKQILENAEINNLIKILGLQYKKKYESVEDLKSLRYGRLMIMTDQDQDGSHIKGLLI 565

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITR--------------GKSLQYVKDEESLEDYLI 564
            F     PSL+   FL     P+   T+               +  ++  + E+   Y I
Sbjct: 566 NFLHHNWPSLLRLPFLEEFITPIVKATKGTGASAKSLSFYSLPEFEEWKTNTENWPTYRI 625

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDA 594
                       ++KG  S       +   
Sbjct: 626 KYYKGLGTSTSQEAKGYFSDMQRHRILFHH 655


>gi|225551164|ref|ZP_03772110.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225378979|gb|EEH01344.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 270

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/246 (42%), Positives = 153/246 (62%), Gaps = 10/246 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YD  +I+IL+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE +   
Sbjct: 1   MANK-----YDGSAIKILEGLEAVRKRPGMYIGSTSSA-GLHHLVWEIVDNSIDEVMNAN 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I+V L+ D S ++ D+GRGIP D++ +  IS  E ++T LHAGGKF++ +YK +GGL
Sbjct: 55  AKNISVVLHEDNSISILDDGRGIPVDINPQTKISTVETVLTVLHAGGKFDESAYKTAGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS+WL   + R+  IY+  F N G +D PL V G+    TGT + FLP  
Sbjct: 115 HGVGSSVVNALSAWLICEVYRDQKIYQAKFSNGGHIDQPLKVIGTTK-KTGTLIHFLPDP 173

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    FN +T++ RL E +FL   ++IS  DK + +          G+  F+ +++  
Sbjct: 174 LIFKNLFFNPNTIKERLHESTFLIKDLKISFEDKINNKK--YEFINDQGLIDFIKFINET 231

Query: 240 KKPLMQ 245
           KK    
Sbjct: 232 KKTFSD 237


>gi|188529734|gb|ACD62554.1| GyrB [Micromonospora sp. 56]
          Length = 393

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 262/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPD-PLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+++ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVELANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|331270971|ref|YP_004385682.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
 gi|329127363|gb|AEB77307.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
          Length = 1417

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 147/756 (19%), Positives = 302/756 (39%), Gaps = 45/756 (5%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGS 73
            ++ LKG + V+KR S+ +G  D   G  H ++E++ N+ID   +G+ + I V    D S
Sbjct: 3   DLKRLKGSERVRKRVSVMMGS-DDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKYEDLS 61

Query: 74  CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS 133
            T+ D+  G+P D + +E     ++ +  L+AG  ++  S   + G++G+G+      S 
Sbjct: 62  YTIIDHADGLPMDWNDKENAYNWDLALKVLYAGDNYDANS--TALGINGLGLCSSQYASE 119

Query: 134 WLKLRIKREGNIYEMSFINGILDNP----------------------LVVTGSAGNDTGT 171
           ++K+   ++G  Y +    G   +                       L+V  +  + TGT
Sbjct: 120 YMKVISYKDGKKYTVKCKKGRPIDKETEEFICGDDDNLFTKEQGERVLLVESNTESKTGT 179

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + + P  ++F+  D + D +  +L + S +N  ++I + D++  +              
Sbjct: 180 YIHYKPDLEVFTNIDISIDWINDKLDKQSMVNKGLKIEVYDEKEDKLYTHYYESGIKDYI 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW-----NDGYHENVLCFTNNIPQKDGG 286
                D +   ++    + +G       +    +      +     +  + N+     GG
Sbjct: 240 KTISDDNNFSDVIYFTDKGKGRDKVDKPEYDYNYEIALVFNNEINKLEYYHNSSELLQGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           +    +  A T  I  Y + +    K++  +   D ++    V+S       +++QTK  
Sbjct: 300 STADAINLAFTYAINEYAKDNNLFNKNESKIKFTDIQDSLICVISSFSTMTSYANQTKLS 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + +  ++      + + L  +  E+ LEA  +V ++L      D A + +   ++     
Sbjct: 360 IDNKFIKDFTNQSLKEKLKLYFIENKLEADRVVNQILINKRANDKAEKTKLNIKKTLQTK 419

Query: 407 IA-SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
                      C+  D   +EL+L EG SA GS   GR+ + QA   + GK+L++ +A F
Sbjct: 420 SNFDDTDNFYACTSNDKSITELYLAEGSSAQGSIVMGRNSKFQACYHVGGKMLSLLKADF 479

Query: 466 DKMLSSQEIGTLITALGTGIGQ--------DSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           +K+  ++ +  L   LG GI          ++FD N L Y KII+ TD D D   IR L+
Sbjct: 480 EKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDTDAFQIRCLM 539

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           LT   R  P+LI +G++YI + PLY IT    + +   EE     L   S         +
Sbjct: 540 LTAIHRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEKLSKKGIKYDKPE 599

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
               + + D     +  +                 +E+   +       + +    + + 
Sbjct: 600 RNKGLGEVDSDIIAETMMNPKT---RKITRVTVQDVEKMANTFELWLGDEVKPRKEVITS 656

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR- 696
             + +     + EK     +N + +        ++E+ ++          K         
Sbjct: 657 NFDYIEHFDNEQEKDIVKVLNENYLPYAIEV--IKERAIISIDGFKPAHRKLLWTLHESN 714

Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
           +         ++ +   + + G  S+ +T+  + +K
Sbjct: 715 LYNKRTKSAHIVGSNMSLNVHGDGSIYETLVRMAQK 750



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRY------KGLGEMNASQLWETTL 755
             +  +               +  +  + +KGI    Y      KGLGE+++  + ET +
Sbjct: 561 SPLYEITTADKVYHAYTEEEKITILEKLSKKGIK---YDKPERNKGLGEVDSDIIAETMM 617

Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           NP TR + RV + D  +  + F   +GDEV+PR+E I  N
Sbjct: 618 NPKTRKITRVTVQDVEKMANTFELWLGDEVKPRKEVITSN 657


>gi|51571569|emb|CAH18951.1| gyrase B [Corallococcus coralloides]
          Length = 367

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 193/369 (52%), Positives = 261/369 (70%), Gaps = 3/369 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+R++R G +YE S+  G+ +      G+     GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVSNGSPQEVGTTDKV-GT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +
Sbjct: 60  TIHFKPDSTVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITA 480
            EI TLITA
Sbjct: 358 AEIVTLITA 366


>gi|6729188|dbj|BAA89727.1| DNA gyrase subunit B [Micromonospora coerulea]
          Length = 393

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 261/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N    +PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHNSKP-SPLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + VTF P   +F   DF++ T+  RL+E++FLN +++I L+D+R       + RE+T FY
Sbjct: 59  SAVTFWPDESVFETVDFDFQTIYRRLQEMAFLNRALRIHLLDERVPEGEEGKLREVTFFY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   N+ L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|6729184|dbj|BAA89725.1| DNA gyrase subunit B [Micromonospora carbonacea]
          Length = 393

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 259/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N    +PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYANSKP-SPLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V F P +D+F   DF++ T+  RL+E++FLN  + I L+D+R       + RE+T  Y
Sbjct: 59  SAVAFWPDADVFETVDFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEGEEGKTREVTFCY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           KGGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 KGGIADFVRHLNASKTPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   N+ L  W + +P EAKII+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|32364166|gb|AAP80231.1| GyrB [Lonepinella koalarum]
          Length = 366

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 218/369 (59%), Positives = 279/369 (75%), Gaps = 3/369 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L L I+R+G++YE ++  G    PL   G     TGT V F PSS IFS   F 
Sbjct: 1   NALSDKLLLIIRRQGHVYEQTYHLGEPQAPLAQIGDTS-KTGTTVRFWPSSTIFSKTVFE 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y+ L+ RLRELSFLNS V I L D+R          Y+GGI+AFV YL+++K P+   P 
Sbjct: 60  YEILKKRLRELSFLNSGVSIKLFDERDGTQ--DHFHYEGGIQAFVEYLNQNKTPIHPKPF 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                +D I ++++++WND Y+EN+ CFTNNIPQ+DGGTHL+G R ALTR + SY+EKS 
Sbjct: 118 YFSMEKDGIGVEISLQWNDSYNENIYCFTNNIPQRDGGTHLAGFRGALTRTLNSYMEKSG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK K    GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+  VES +N+  + +L
Sbjct: 178 LNKKAKVETSGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEVKGAVESVMNEAFAGYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P +AKII  K++DA+  R+AAR+AR++TRRKGVLDIA LPGKLADC ERDP  SEL+
Sbjct: 238 EENPNDAKIIATKIVDAARAREAARKAREMTRRKGVLDIAGLPGKLADCQERDPAFSELY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG GIG+D
Sbjct: 298 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRD 357

Query: 489 SFDINKLRY 497
            ++ +K+RY
Sbjct: 358 EYNPDKMRY 366


>gi|93004069|emb|CAI94337.2| gyrase B [Helicobacter pullorum]
          Length = 366

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 180/371 (48%), Positives = 250/371 (67%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L++ I + G IY  +F  GI  + L + G    + GT + F+P 
Sbjct: 1   GLHGVGVSVVNALSKSLQMTIYKNGQIYRQNFAQGIPQDELTIIGECK-ENGTTIEFIPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF V +F  + L  R +EL++LN  + I   D+R  +  E T  ++GG+  FVS  D 
Sbjct: 60  GTIFEVTEFQREILAKRFKELAYLNKQITIHFKDER--DNFEETYHFEGGLNQFVS--DL 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +KKPL+ + I  +G  +++ + +A+ +NDG+ E VL F NNI   DGGTH SG R  LTR
Sbjct: 116 NKKPLISTIISFEGLENDVEMQIALAYNDGFDEKVLSFVNNIRTIDGGTHESGFRMGLTR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            IT+Y+E +  +++    + G+D REG  +++S+K+ DP+F  QTK KL SS VR +V+ 
Sbjct: 176 VITNYIEANANAREKDSKITGEDIREGLVAIVSVKVVDPQFEGQTKGKLGSSFVRPIVQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + L+ + EE+P EAK I++K L A+  R+AA++AR+LTR+K    + +LPGKLADC 
Sbjct: 236 LTFEKLTKFFEENPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S+EI  LI
Sbjct: 296 SKDPSISEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLI 355

Query: 479 TALGTGIGQDS 489
           TALG GIG+D 
Sbjct: 356 TALGCGIGEDF 366


>gi|68159571|gb|AAY86367.1| gyrase B [Clostridium bolteae]
          Length = 401

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 181/402 (45%), Positives = 247/402 (61%), Gaps = 11/402 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT- 169
             +YKVSGGLHGVG SVVNALSS L +++ ++G  Y  S+  GI   P+   G     T 
Sbjct: 1   DSNYKVSGGLHGVGASVVNALSSHLHVQVDQDGFSYAQSYERGIPAAPVKQLGPCSQGTH 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK---------RSPEPRE 220
           GT VTF+P  DIF    ++ + L+ RLRE +FL   ++ISL D                 
Sbjct: 61  GTTVTFMPDQDIFPSIAWDRNILEERLRETAFLTQGLEISLYDLRRDPAGEATCPVTAWS 120

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  ++ G++ FVS+L++  +PL    I  +   D +  + A+  N  Y E +L F NNI
Sbjct: 121 RTFCFQNGLKDFVSWLEQDGEPLYTGIISGRHETDKVQAEFALVHNSSYSEQLLSFANNI 180

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH++G R AL+R +  Y   +   K    S+  D+  EG T+VLS+++ D +F 
Sbjct: 181 STPEGGTHVTGFRQALSRAVNDYARNAKLLKDTDSSLSRDELSEGLTAVLSVRLQDAQFE 240

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK+KL SS VR VVE  V   L+ +LE++P  AK I  K + A   R AAR AR++ R
Sbjct: 241 GQTKQKLGSSHVRPVVEQMVYTRLTLFLEQNPAAAKAICDKAMLARKARTAARTAREMAR 300

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK  L   SLPGKLADCS ++P + ELF+VEGDSAGGSAK  RSRENQA+LPLRGKILNV
Sbjct: 301 RKTALSGLSLPGKLADCSSKNPGECELFIVEGDSAGGSAKLARSRENQAVLPLRGKILNV 360

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+A  D++ ++ EI  +I+A GTGI  D+F +  LRY+KII+
Sbjct: 361 EKASLDRISANAEIKAMISAFGTGI-LDTFSLENLRYNKIIL 401


>gi|211927059|dbj|BAG82782.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927061|dbj|BAG82783.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 181/424 (42%), Positives = 250/424 (58%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ ++L I   G  +E  + N    +PL   G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRVELEINYGGFHWEQEYNNAKP-SPLEK-GDATRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F P + IF    F+ +T+  RL+E++FLN  + I+L D R                
Sbjct: 59  TTVRFWPDASIFETTTFSAETVARRLQEMAFLNKGLTITLTDNRLSDEAAVAEAEMDPDA 118

Query: 215 ----------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                           + + R  T  Y  G+  ++ +L+R K  +  S +          
Sbjct: 119 EEGAETIKSDAEKAQKAAKVRTRTYHYPDGLVDYIKHLNRTKNAIHTSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + 
Sbjct: 179 VEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYAYDKKLLKEKDGKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P EAKII
Sbjct: 239 GDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKSFVQKTCNEHLAHWFEANPAEAKII 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           +KK +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 IKKAVDSAQARMAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYH
Sbjct: 359 AKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|198042708|gb|ACH81179.1| GyrB [Vibrio sp. UST001201-014]
          Length = 363

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 212/365 (58%), Positives = 283/365 (77%), Gaps = 3/365 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ FS 
Sbjct: 1   VSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV +L+ +K P++
Sbjct: 60  TEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNKTPII 118

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+
Sbjct: 119 EKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSF 178

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + 
Sbjct: 179 MDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEK 238

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP 
Sbjct: 239 LSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 298

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 299 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 358

Query: 484 GIGQD 488
           GIG+D
Sbjct: 359 GIGRD 363


>gi|259018124|gb|ACV89654.1| DNA gyrase subunit B [Nocardia pseudobrasiliensis]
          Length = 414

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 180/417 (43%), Positives = 252/417 (60%), Gaps = 30/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  +   G  +   + +      L + G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEADVDFGGYHWSQEYKDAKP-GKL-IQGDATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F P  +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWPDPEIFETTTFNFETVARRLQEMAFLNKGLTITLTDQRVSQSDITDEVVSETAE 118

Query: 215 -----------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +  T  Y GG+E FV +++R K+ +  S +   G      +++AM
Sbjct: 119 APKADTIGAPIEAKVKTRTYHYPGGLEDFVKHINRTKQSIHNSIVAFTGKGTGHEVEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T+++S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K +
Sbjct: 239 EGLTAIVSVKIADPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC  +DPK SE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSKDPKLSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
               QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI
Sbjct: 359 DSMYQAILPIRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKI 414


>gi|163256340|dbj|BAF95680.1| DNA gyrase subunit B [Bradyrhizobium sp. EPxn1]
          Length = 257

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 148/255 (58%), Positives = 183/255 (71%)

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE++ G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q 
Sbjct: 1   IDEAVAGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQN 60

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTE
Sbjct: 61  SYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGRRGTE 120

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTFL S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E F
Sbjct: 121 VTFLASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGGVEEF 180

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G 
Sbjct: 181 VKYLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGF 240

Query: 293 RSALTRQITSYVEKS 307
           R ALTRQ+  Y E +
Sbjct: 241 RGALTRQVNGYAEAN 255


>gi|224472822|gb|ACN49120.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii]
          Length = 369

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 213/372 (57%), Positives = 280/372 (75%), Gaps = 4/372 (1%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-V 184
           SVVNALS  L+L I+R+G ++E ++  G+  +PL V G     TGT V F PS D F   
Sbjct: 1   SVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRDN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F +D L  RLRELSFLNS V I LIDKR+    E    Y+GGI+AFV +L+++K P+ 
Sbjct: 60  TEFQHDILAKRLRELSFLNSGVSIRLIDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIH 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR +  Y+
Sbjct: 118 PNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNRYM 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +K   +KK K S  GDD REG  +V+S K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L
Sbjct: 178 DKEGYNKKSKVSATGDDAREGLVAVISGKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  
Sbjct: 238 VEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG G
Sbjct: 298 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 357

Query: 485 IGQDSFDINKLR 496
            G+D ++ +KLR
Sbjct: 358 NGRDEYNPDKLR 369


>gi|300176630|emb|CBK24295.2| unnamed protein product [Blastocystis hominis]
          Length = 1173

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 147/701 (20%), Positives = 255/701 (36%), Gaps = 69/701 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q L   D + KRP  YIG     +                      GL  +  E+L NA
Sbjct: 21  YQKLSQRDHILKRPDTYIGSVQNITQKMWLFDETSKSMQYRSVNYNPGLIKIFDEILVNA 80

Query: 53  IDESLEGYA---DIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           +D            I V+++    + ++ ++G GIP  +H E  +    +I  +L +G  
Sbjct: 81  VDNKQR--CPEMTTIKVSVDKKTNTISIYNDGDGIPVAIHPEYNVYIPSMIFGQLLSGTN 138

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGN 167
           F+  S KV+GG +G G  + N  S+  ++        +   F N +  +    VT +  +
Sbjct: 139 FDDNSKKVTGGRNGFGAKLTNIYSTEFRVETVSNEKRFIQVFRNNMTEEEKPKVTKATRS 198

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS----FLNSSVQISLIDKRSPEPREITM 223
              TE+ F P    F +++ + DT+    R +       + SV++    ++         
Sbjct: 199 KQYTEIVFKPDLARFGMKELDDDTIAIMKRRVYDVAGVTDDSVKVYWNGEKLNVRSFNDY 258

Query: 224 F--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN--------- 272
              ++  ++        +            G+       +      G             
Sbjct: 259 VKLFERTLQNTDFVEQNNDALQHIDIQMAYGASPRWQFAVIPTPITGITPFSVGSYFFSL 318

Query: 273 --VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
              + F N +    GG HL+ L   +  Q+   +E+       KRSV     R+      
Sbjct: 319 NGKMSFVNGVFTNRGGKHLTYLTDHIVAQLQPAIERR-----LKRSVKPSLIRQHLCVFC 373

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           +  + +P F SQTKE L ++         + +   ++L +       IV  V  +  ++D
Sbjct: 374 NCLIENPTFDSQTKECLTTNSKDF---GSLPELSPSFLSKIERSG--IVDLVSTSMHLKD 428

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSR 445
                +    +   L          +   +   ++ L + EGDSA     GG    GR  
Sbjct: 429 IQTLKKSSGTKVNRLLNIPKLDDANNAGTKKSGQATLIITEGDSAKALAVGGLGVVGRD- 487

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
            N  + PL+GK++NV  A   +   ++EI  L+  LG   G++  D + LRY  ++IMTD
Sbjct: 488 -NYGVFPLKGKVMNVRDATEKQCSENEEIQNLVRILGLKYGKEYKDTSSLRYGHLLIMTD 546

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
            D DG+HI+ L+L  F    PSL+   F+     P+  +TR K        +  +D+   
Sbjct: 547 QDYDGSHIKGLVLNLFETFWPSLLKLDFVSQFITPIVKVTRKKEEHTFFTVKEFQDWS-- 604

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
              ++E +L                 +       L +   P    T  E  +I   F   
Sbjct: 605 ---NKEKDLKSWKIKYYKGLGTSTAKEGKEYFSNLDRHVLPFAPLTSSESNLIDMCFKRS 661

Query: 626 SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
             +E                 EKS  S +  IN   I   R
Sbjct: 662 RCEER-KEWIDGFDPESYIDYEKSPVSIYDFINKELIQFSR 701


>gi|71833788|emb|CAI94333.1| gyrase B [Helicobacter hepaticus]
          Length = 366

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 171/371 (46%), Positives = 243/371 (65%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + IK+ G+IY   F  GI  + L V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSKRLIMTIKKNGHIYRQEFAKGIPQSDLEVIGNTK-KHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            ++  V +F+ D L  R +E+++LN ++ I   D+R+          +GG++ F+   D 
Sbjct: 60  GEVMEVLEFDKDILVRRFKEMAYLNHNITIQFKDERTQFEEIYHF--EGGLKQFIQ--DV 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +KKPL+ S I  + +     I++A+ +N+GY E +L F NNI   DGGTH +G R+ L+R
Sbjct: 116 NKKPLISSIISFEATEQESEIEIALAYNEGYDEKLLSFVNNIRTPDGGTHEAGFRAGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V G+D REG  +++S K+ DP+F  QTK KL SS V+ +V+ 
Sbjct: 176 AIMNYIEANANAREKDAKVSGEDVREGLVAIISTKIIDPQFEGQTKGKLGSSFVKPIVQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + LS + EE+P EAK I++K + A+  R+AA++ARDLTR+K    + +LPGKLADC 
Sbjct: 236 LTYEKLSKFFEENPNEAKAIMQKAIMAARGREAAKKARDLTRKKESFSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S EI  +I
Sbjct: 296 SKDPSVSEIYLVEGDSAGGSAKQGRDRTFQAILPLRGKILNVEKSRLDKILKSDEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G GIG++ 
Sbjct: 356 TAFGCGIGEEF 366


>gi|308152533|dbj|BAJ22245.1| DNA gyrase subunit B [Mycobacterium flavescens]
          Length = 421

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 181/422 (42%), Positives = 249/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS  ++L I R+G  +   +   +    L   G    +TG
Sbjct: 3   NSGYAVSGGLHGVGVSVVNALSRRVELTILRDGYEWFQYYDRSVP-GELKQGGKTK-ETG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    DIF   +++++T+  RL+E +FLN  + I L D+R                
Sbjct: 61  TTVRFWADPDIFETTEYDFETVARRLQEQAFLNKGLTIELTDERVTAEEVVDEVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +     Y GG+  FV +++R K  + QS I   G      ++
Sbjct: 121 APKTADEKAAENSKPHKVKHRVFHYPGGLVDFVKHINRTKTAIQQSIIDFDGKGPGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W + +P EAK +V 
Sbjct: 241 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEELTHWFDANPAEAKTVVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|225547698|gb|ACN93662.1| DNA gyrase subunit B [Nocardia kruczakiae]
          Length = 414

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 174/417 (41%), Positives = 250/417 (59%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALSS +   I R+G  +   + +      L V G   + TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T   F    D+F    +N++T+  RL+E++FLN  + I+L D+                 
Sbjct: 59  TTQRFWADPDVFETTTYNFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETAE 118

Query: 214 -----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                        P+ +  T  Y GG+E FV +++R K+ +  + +          +++A
Sbjct: 119 APKHDEGSAAPPEPKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 414


>gi|32364172|gb|AAP80234.1| GyrB [Gallibacterium anatis]
          Length = 370

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 218/373 (58%), Positives = 286/373 (76%), Gaps = 3/373 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L+L I+REG+++E  +  G    PL V G + + TGT V F PS  IFS  +F 
Sbjct: 1   NALSDKLQLTIRREGHVHEQFYHLGEPQAPLAVIGES-DKTGTTVRFWPSPSIFSDTEFQ 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y+ L  RLRELSFLNS V I LID R+   R     Y+GGI+AFV YL+++K P+   P 
Sbjct: 60  YEVLSKRLRELSFLNSGVSIRLIDLRT--NRSDHFHYEGGIQAFVEYLNKNKNPIHSKPF 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            +   +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y+EK  
Sbjct: 118 YLNTEKDGIGVEVALQWNDGFQENLYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMEKEG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK K ++ GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+SVVES V + L  +L
Sbjct: 178 YNKKSKVAMAGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEVKSVVESAVGERLQEYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P +AKIIV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ERDP  SEL+
Sbjct: 238 LENPNDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQERDPALSELY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD+MLSSQE+  LITALG GIG+D
Sbjct: 298 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDRMLSSQEVAALITALGCGIGRD 357

Query: 489 SFDINKLRYHKII 501
            ++ +KLRYH II
Sbjct: 358 EYNPDKLRYHSII 370


>gi|26984133|gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum]
 gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 137/698 (19%), Positives = 253/698 (36%), Gaps = 68/698 (9%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHH 43
                +Y     Q    L+ +  RP  YIG  +  +                    GL+ 
Sbjct: 21  KTIEQTY-----QKKTQLEHILLRPDTYIGSVEKHTQTLWVWENDKMTHRPVTYVPGLYK 75

Query: 44  MIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           +  E+L NA D        D + V ++ +    +V +NG GIP ++H+EEG+   E+I  
Sbjct: 76  IFDEILVNAADNKQRDPKMDAVEVVIDPEQNFISVYNNGDGIPVEIHQEEGVYVPELIFG 135

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-LDN 157
            L     ++    K +GG +G G  + N  S+   +    +G     Y+  F + +    
Sbjct: 136 HLLTSSNYDDAEKKTTGGRNGYGAKLTNIFSTEFVIETA-DGKRQKKYKQVFSSNMGKKG 194

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLREL-SFLNSSVQISLIDK 213
             ++T    ++  T+V+  P    F+++    D    ++ R+ +L   L  +V++ L ++
Sbjct: 195 EPIITKCKASENWTKVSSKPDLAKFNMEHLEEDVVALMRKRVIDLGGCLGKTVKVKLNEQ 254

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R P                            +  +++  +   +  ++ +  ++G  + V
Sbjct: 255 RIPVKSFEEYCKL----------FLDSTDAKREFLKVTDADGLLRWEICVSLSEGQFQQV 304

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GGTH+  + + +   I   V K   +   K        +      ++  
Sbjct: 305 -SFVNSIATIKGGTHVDYVANQIANHIMGAVIKKNKNANIKAHA----VKNHLWMFVNAL 359

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV-RDAA 392
           + +P F SQTK      E  ++ +S          +      K I       S      +
Sbjct: 360 IDNPAFDSQTK------ETLTLRQSSFGSKCELQPDFLKKVEKNIGIVETLLSWADFKNS 413

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQA 449
           +  +    +K             D   R+ +K  L L EGDSA   A  G S   R++  
Sbjct: 414 KDLKKTDGKKSEKVKVEKLEDANDAGGRNSEKCTLILTEGDSAKALAMAGISVVGRDHYG 473

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           + PLRGK+LNV  A   ++  ++EI  +   LG   G++   +  LRY  ++IMTD D D
Sbjct: 474 VFPLRGKLLNVREASHKQVSENKEIEAIKKILGLQTGKEYDSVKSLRYGHLMIMTDQDHD 533

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGI-TRGKSLQYVKDEESLEDYLINQS 567
           G+HI+ LL+ F     PSL+      I    P+     +   +         E +  +  
Sbjct: 534 GSHIKGLLINFIHTFWPSLLKVPSFLIEFITPIVKATHKSGKILSFYTMPEYESWRKSLG 593

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
            +        S             +       L K           +   I   F+ +  
Sbjct: 594 ANSS----GWSIKYYKGLGTSTSKEGKEYFQDLQKHRKDFIWADNQDGESIELAFSKKKI 649

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
            E   +   +     +   ++   S+   +N   IL  
Sbjct: 650 -EARKNWLRQFEPGTHLDQKEKYISYTEFVNKELILFS 686


>gi|188529762|gb|ACD62567.1| GyrB [Micromonospora sp. 11]
          Length = 393

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 182/397 (45%), Positives = 262/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPD-PLEE-GETADRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTICRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVSNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPVRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|328876909|gb|EGG25272.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1233

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 154/750 (20%), Positives = 262/750 (34%), Gaps = 89/750 (11%)

Query: 3   DNIQNSSYDADSI-------------QILKGLDAVKKRPSMYIGDT----DGE------- 38
           +N     Y A +I             Q     + V  RP  YIG      D +       
Sbjct: 66  NNFNKRLYSASTIGGSSKSKSIEDIYQKKTPTEHVLLRPDSYIGTIQRIEDDQWVLSNSE 125

Query: 39  -----------------------------SGLHHMIYEVLDNAIDESLEGYA-DIITVTL 68
                                         GL  +  E+L NA D      A   I V +
Sbjct: 126 FNQETKKKSSSSSATPVAPFIHHIKAKYIPGLLKIFDEILVNAADNKQRDPAMSTIRVDI 185

Query: 69  NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           + D GS ++ ++G GIP  +HK E I   E++M  L +G  FN    KV GG +G G  +
Sbjct: 186 DADKGSISIMNDGHGIPVSIHKGEKIYVVEMVMGSLMSGSNFNDAELKVVGGRNGFGAKL 245

Query: 128 VNALSSWLKLRIKREGNI--YEMSFINGILDNPLVVTGSAGNDT---GTEVTFLPSSDIF 182
            N  SS  K+      +   Y  S+ + +      +  S         T +TF P    F
Sbjct: 246 TNIFSSDFKVETYDAKSKLLYSQSWKDNMGKREEPIIKSVHPMNQQEFTRITFRPDLKRF 305

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            ++    D +   +    +  ++    +    + +  +        +        + K P
Sbjct: 306 HMESLRDDDVLKLMERRVYDIAACCPDIKVYFNGQHIQYNFQSYVSLFEHHLSKHQEKNP 365

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              +      +       + +  +D      + F N+I    GGTH++ +   + R I+ 
Sbjct: 366 S-DTADNFVFANVGDRWKIGLATSDTGQFMQVSFVNSINTLKGGTHVNFIADQVVRYISD 424

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
            ++K      +   +   + +      ++  + +P F SQTKE L +       +  + +
Sbjct: 425 RLKKK----YNDLEIRPMNIKHHLALFVNCLIDNPSFDSQTKETLTTKYQNFGSQPEIPE 480

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT-----RRKGVLDIASLPGKLADC 417
            + A   ++    + I   VL           +   +     +    LD A+  G     
Sbjct: 481 PVLAAFVKNSKILEKIAGWVLMKQQAELVHSSSTRTSKASLLKNIHKLDDANWAGG---- 536

Query: 418 SERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
             +  K   L L EGDSA      G    GR +    + PLRGK+LNV      ++L+++
Sbjct: 537 --QKSKLCTLILTEGDSAKSLAVSGLGVIGRDK--YGVFPLRGKLLNVRDVTPKQLLNNE 592

Query: 473 EIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
           EI  L   LG    +   D      LRY KI+IMTD D DG+HI+ L++ F     P L+
Sbjct: 593 EINNLTNILGLSHKKKYIDEESMADLRYGKIMIMTDQDNDGSHIKGLIINFIHYFWPELL 652

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
              F+     P+  +++G   +         +++ N                +  N    
Sbjct: 653 QRDFVEEFVTPIIKVSKGSEKKAFFTMNDYHNWVKNSQSGVTKGWTIKYYKGLGTNTSAE 712

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
             +    + K I  F             I+  FN ++ Q     L S    +L+      
Sbjct: 713 AKEYFSNLKKHIIKFT---WSGEPSSNAIAMAFNKDAVQARQRWLLSSDTTQLSVDHSIK 769

Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           E S+   IN   I     A       V++G
Sbjct: 770 ELSFDDFINKELIHYSWAANHRSIPSVMDG 799


>gi|121730249|ref|ZP_01682630.1| na(+)-translocating NADH-quinone reductase subunit a
           (na(+)-translocating nqr subunit a) (na(+)-nqr subunit
           a) [Vibrio cholerae V52]
 gi|121627999|gb|EAX60554.1| na(+)-translocating NADH-quinone reductase subunit a
           (na(+)-translocating nqr subunit a) (na(+)-nqr subunit
           a) [Vibrio cholerae V52]
          Length = 366

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 131/375 (34%), Positives = 203/375 (54%), Gaps = 11/375 (2%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89
           MY   TD     +H+  EV+DN++DE+L GYA  I V L+ D S  V D+GRG+P D+H 
Sbjct: 1   MY---TDTTRP-NHLGQEVIDNSVDEALAGYASKIQVILHADQSLEVIDDGRGMPVDIHP 56

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           EE +S  E+I+ +LHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ ++R+G +YE++
Sbjct: 57  EEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIA 116

Query: 150 FINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           F +G     L VTG+ G  +TGT V F P +  F   +F+   L + LR  + L   ++I
Sbjct: 117 FEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEI 176

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA-MRWND 267
              DK      E    Y+ G++ +++   +    L + P   + +    +   A +   +
Sbjct: 177 IFTDK--VNNNEYRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAATWAVIWLPE 234

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G       + N IP   GGTH++GLR  L   +  + E      +    + G+D  +   
Sbjct: 235 GGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRCA 293

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
            VLSIKM DP+F+ QTKE+L S +  + V   V D  S WL E P  A+ + +     + 
Sbjct: 294 YVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVC--IAN 351

Query: 388 VRDAARRARDLTRRK 402
                R ++ + R+K
Sbjct: 352 AHSRMRASKKVVRKK 366


>gi|188529805|gb|ACD62588.1| GyrB [Micromonospora sp. 74]
          Length = 393

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 261/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPD-PLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++ M+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIVMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHGEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|308152529|dbj|BAJ22243.1| DNA gyrase subunit B [Mycobacterium fallax]
          Length = 419

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 179/421 (42%), Positives = 252/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I ++G+ +   +   +    L   G     TG+
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADICKDGHEWFQVYNRSVP-GTLRQ-GEKTTKTGS 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTVYDFETIARRLQEMAFLNKGLTIELTDERVTPDEVVDEVVSDTAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  +V +++R K P+ QS I  +G      +++
Sbjct: 120 PKTAEQQEAEKSAPHKVKHRVFHYPGGLVDYVKHINRTKSPIQQSIIDFEGKGTGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD
Sbjct: 180 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLSGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVQKTCNEQLTHWFEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC   DPK+SEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARLAARKARELVRRKSATDLGGLPGKLADCRSTDPKRSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE++R D++L + E+  +ITALGTGI  D FDI KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKSRIDRVLKNTEVQAIITALGTGI-HDEFDIEKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|188529736|gb|ACD62555.1| GyrB [Micromonospora sp. 61]
          Length = 393

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 261/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D  L   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQKYHNSKPDA-LEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|308152511|dbj|BAJ22234.1| DNA gyrase subunit B [Mycobacterium tokaiense]
          Length = 419

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 176/421 (41%), Positives = 253/421 (60%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  ++++G+ +  ++   +    L   G    +TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADVRKDGHEWFQTYERSVP-GTLRQ-GEKTRETGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I+L D+R                 
Sbjct: 60  TIRFWADPDIFETTTYDFETVARRLQEMAFLNKGLTINLSDERVTADEVVDEVVSDTAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + ++ T  Y GG+  FV +++R K  +  S I   G      +++
Sbjct: 120 PKTAEEKAAESAAPHKIKKRTFHYPGGLVDFVKHINRTKTAIQGSVIDFDGKGPGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L  W + +P EAKI+V K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEELQHWFDANPAEAKIVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ +LRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLARLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|15530563|gb|AAD54296.3| DNA gyrase subunit B [Aeromonas veronii]
          Length = 371

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 218/374 (58%), Positives = 280/374 (74%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNAL   L L I+R G++ E ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALFXKLFLTIRRNGHVSEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD R+G  +V+S+K+ DP+FSSQTK KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVRKGLITVISVKVRDPKFSSQTKAKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG GIG+D ++ +K
Sbjct: 358 LGCGIGRDEYNPDK 371


>gi|6729231|dbj|BAA89737.1| DNA gyrase subunit B [Micromonospora rosaria]
          Length = 393

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 183/397 (46%), Positives = 258/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N    +PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKAGFVWRQQYTNSKP-SPLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   D ++ T+  RL+E++FLN  + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDLDFQTIYRRLQEMAFLNRGLTIHLLDERVAEDEDGKQREVTFCY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           KGGI  FV +L+  K P+ +S +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 KGGIADFVRHLNASKNPIHKSVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTGIVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   N+ L  W + +P EAKII+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|170575369|ref|XP_001893211.1| DNA topoisomerase II, alpha isozyme [Brugia malayi]
 gi|158600906|gb|EDP37957.1| DNA topoisomerase II, alpha isozyme, putative [Brugia malayi]
          Length = 1511

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 135/694 (19%), Positives = 262/694 (37%), Gaps = 84/694 (12%)

Query: 15  IQILKGLDAVKKRPSMYIGDT-----------DGES------------GLHHMIYEVLDN 51
            Q    L+ +  RP  YIG             D E+            GL+ +  E+L N
Sbjct: 77  YQKKSQLEHILLRPDTYIGSVEYTDRTPMWVYDTETDRILQREISYVPGLYKIFDEILVN 136

Query: 52  AIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D        ++I V +N +    ++ +NGRGIP  LHK E +   E+I   L     +
Sbjct: 137 AADNKQRDPKMNLIKVNINKEKNEISIYNNGRGIPVVLHKIEKLYVPELIFGTLLTSSNY 196

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGSAGN 167
           +    KV+GG +G G  + N  S    L       G  ++ +++N +  +      ++  
Sbjct: 197 DDSERKVTGGRNGYGAKLCNIFSKEFTLETSTNEYGKAFKQTWVNNMSKDGEPKITTSSK 256

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +  T VTF P    F + + + D    +  R  +++     V++ L +K+          
Sbjct: 257 EDFTRVTFRPDLAKFKMTELDDDIVALMCRRAYDIAGSTRGVKVFLNNKQ---------I 307

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G + ++    +H         ++     +   ++A+  +D   + V  FTN+I    
Sbjct: 308 PVQGFKQYIEQYVKHNVDSNGEAYKVVYESVSPRWEVALTISDKGFQQV-SFTNSIATTK 366

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   +  ++   ++K    K    +V     +      ++  + +P F SQTK
Sbjct: 367 GGRHVDYVVDQIASKLIDVIKK-KIGKSGGINVKPFQIKNHMWIFVNALIENPTFDSQTK 425

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E +            +++       +           +++A M     +           
Sbjct: 426 ETMTLQSKSFGSTCELSEKFIQAAMKCG---------IVEAIMAWGVPK----------- 465

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILN 459
           L+ A+      D   ++  +  L L EGDSA      G    GR +    + PLRGK+LN
Sbjct: 466 LEDAN------DAGTKNSAQCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKMLN 517

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL---RYHKIIIMTDADVDGAHIRTL 516
           V      +++ + E+  L+  +G            +   RY K+++M D D DG+HI+ L
Sbjct: 518 VREGNHKQIMENAEVNALLKIIGLQYRLKYDKDEDMKTLRYGKVMVMADQDQDGSHIKGL 577

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIELF 575
           ++ F     P+L+   F+     P+   T+GK            ++L N ++       +
Sbjct: 578 VINFIHYNWPALVRRNFVEEFITPIVKATKGKEEISFFSLPEYREWLNNTENWKTYRIKY 637

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
               G  +  + + +  D  +           +     +QA+    F+ +  +E  + L 
Sbjct: 638 YKGLGTSTSKEAKEYFMDMRR-----HRIQFKYSGEEDDQALDM-AFSKKKVEERKIWLT 691

Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           + +A R N   +   + +    N   +  K    
Sbjct: 692 NWMAERRNRREDGLTEEYLYDKNTYVVSFKDFVN 725


>gi|110624479|dbj|BAE98186.1| DNA gyrase B subunit [Shewanella algidipiscicola]
          Length = 368

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 217/371 (58%), Positives = 290/371 (78%), Gaps = 4/371 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ I+R+G +YE  + +G+ D P+ V G A   TGTE+ F PS++ 
Sbjct: 1   GVGVSVVNALSEKLQMTIRRDGKVYEQFYTHGVPDAPISVVGEAA-TTGTEIRFWPSNET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  +F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+ +K 
Sbjct: 60  FTDVEFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKT 117

Query: 242 PLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR +
Sbjct: 118 PVNKEVFHFIQERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRNL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+++   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NAYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + LS +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+
Sbjct: 238 GEQLSDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 298 DPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 357

Query: 481 LGTGIGQDSFD 491
           LG GIG+D +D
Sbjct: 358 LGCGIGRDEYD 368


>gi|261335183|emb|CBH18177.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1455

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 138/702 (19%), Positives = 239/702 (34%), Gaps = 65/702 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS       Y     Q     + +  RP MYIG  +  +                     
Sbjct: 1   MSGRTVEEIY-----QKKTQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCTWT 55

Query: 40  -GLHHMIYEVLDNAIDESLEG-YA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
            GL+ +  E+L NA D  +   +    I V ++   G   V +NG GIP   H+E  +  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREHDLWV 115

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+  ++     R    + M + N 
Sbjct: 116 PEMIFGHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRNN 175

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +L+N   V         T VTF P  + F+++ F  D +    R +  +         DK
Sbjct: 176 MLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQRRVYDIAG-----CTDK 230

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
                   T         +V       +    S       R  + +              
Sbjct: 231 SLCCYLNDTRIACRSFPEYVDLYPTMGEERKPSSYSRVNDRWEVCV-----RVSNVGFQQ 285

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           + F N+I    GGTH+  +   +  ++T         +K K  V     R      ++  
Sbjct: 286 VSFVNSIATTRGGTHVKYIVDQIIAKVTDQA-----MRKSKTEVKPHMIRPHLFIFVNSL 340

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDA 391
           + +P F SQTKE L + + R      +   L   + +  +  + +       +       
Sbjct: 341 IENPSFDSQTKETLNTPKARFGSTCDLPASLIDCVLKSSIVERAVEMANSRLNREMAMKM 400

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQ 448
               R        LD A+  G       +  ++  L L EGDSA      G    +R+  
Sbjct: 401 RNTNRKQILGIPKLDDANEAGG------KYSQRCTLILTEGDSAKALCTAGLAVENRDYF 454

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            + PLRGK LNV  A   K++   E   +   +G  + Q       LRY  ++IM+D D 
Sbjct: 455 GVFPLRGKPLNVRDASVKKVMGCAEFQAVSKIMGLDLSQKYTSTEGLRYGHLMIMSDQDH 514

Query: 509 DGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           DG+HI+ L++       P L+   GFL     P+    +           S E  +   S
Sbjct: 515 DGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKGR------GNSDEGTISFFS 568

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
           + +  E        I   +LR +        K  ++++ N D+  +         + +  
Sbjct: 569 MPDYFEWKNAVGEGIKNYELRYYKGLGTSGAKEGREYFENIDRHRLNFVYEDRKDDDDIV 628

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
                    +    +      +  +   + N  ++       
Sbjct: 629 MAFAKDKVDERKRWITEFKANTNINESMNYNVRNVSYSEFVH 670


>gi|83367164|gb|ABC17641.1| DNA topoisomerase IIalpha [Trypanosoma brucei]
          Length = 1455

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 138/702 (19%), Positives = 239/702 (34%), Gaps = 65/702 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS       Y     Q     + +  RP MYIG  +  +                     
Sbjct: 1   MSGRTVEEIY-----QKKTQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCTWT 55

Query: 40  -GLHHMIYEVLDNAIDESLEG-YA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
            GL+ +  E+L NA D  +   +    I V ++   G   V +NG GIP   H+E  +  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREHDLWV 115

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+  ++     R    + M + N 
Sbjct: 116 PEMIFGHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRNN 175

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +L+N   V         T VTF P  + F+++ F  D +    R +  +         DK
Sbjct: 176 MLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQRRVYDIAG-----CTDK 230

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
                   T         +V       +    S       R  + +              
Sbjct: 231 SLCCYLNDTRIACRSFPEYVDLYPTMGEERKPSSYSRVNDRWEVCV-----RVSNVGFQQ 285

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           + F N+I    GGTH+  +   +  ++T         +K K  V     R      ++  
Sbjct: 286 VSFVNSIATTRGGTHVKYIVDQIIAKVTDQA-----MRKSKTEVKPHMIRPHLFIFVNSL 340

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDA 391
           + +P F SQTKE L + + R      +   L   + +  +  + +       +       
Sbjct: 341 IENPSFDSQTKETLNTPKARFGSTCDLPASLIDCVLKSSIVERAVEMANSRLNREMAMKM 400

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQ 448
               R        LD A+  G       +  ++  L L EGDSA      G    +R+  
Sbjct: 401 RNTNRKQILGIPKLDDANEAGG------KYSQRCTLILTEGDSAKALCTAGLAVENRDYF 454

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            + PLRGK LNV  A   K++   E   +   +G  + Q       LRY  ++IM+D D 
Sbjct: 455 GVFPLRGKPLNVRDASVKKVMGCAEFQAVSKIMGLDLSQKYTSTEGLRYGHLMIMSDQDH 514

Query: 509 DGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           DG+HI+ L++       P L+   GFL     P+    +           S E  +   S
Sbjct: 515 DGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKGR------GNSDEGTISFFS 568

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
           + +  E        I   +LR +        K  ++++ N D+  +         + +  
Sbjct: 569 MPDYFEWKNAVGEGIKNYELRYYKGLGTSGAKEGREYFENIDRHRLNFVYEDRKDDDDIV 628

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
                    +    +      +  +   + N  ++       
Sbjct: 629 MAFAKDKVDERKRWITEFKANTNINESMNYNVRNVSYSEFVH 670


>gi|119369950|gb|ABL67989.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 172/429 (40%), Positives = 233/429 (54%), Gaps = 13/429 (3%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHA G F  K Y  SGGLHGVG SVVNALS WL++ + RE   + M F  G   
Sbjct: 1   EVIMTVLHAWGNFEGKVYDTSGGLHGVGSSVVNALSEWLEVEVARERQNHVMRFERGKPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLID--- 212
             L  TG + N  GT V F P + IF S   F+   L    +  ++L   V+I       
Sbjct: 61  GKLKNTG-SVNRRGTIVRFKPDAQIFGSEAHFSPAMLYRMAKSKAYLFRGVEIHWRCDPS 119

Query: 213 --KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS--IDLAMRWNDG 268
             +    P +  + + GG+  F+      +  +       +    +    ++ A+ W   
Sbjct: 120 LIRNGKTPADEILKFPGGLADFLRSEIEGETTVSPRLFLGRTENKDGKGAVEWAVAWAPE 179

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
               +  F N IP   GGTH  GLR+ALT+ + +Y E++   K  +  +  DD      +
Sbjct: 180 RDGFMQSFCNTIPTPLGGTHEQGLRNALTKALRAYGERAGNKKTAQ--ITPDDVMSAACA 237

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VLS+ + +P F  QTKEKL + + + +VE+ V D    WL E P EA  ++  V+D +  
Sbjct: 238 VLSVFIREPEFQGQTKEKLSTQDAQRLVETVVRDHFDHWLAESPAEADRLLSFVIDQADD 297

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R   R+ R+ T+RK       LPGKL DC+   P  +ELFLVEGDSAGGSAKQ R R  Q
Sbjct: 298 RLKRRQERE-TQRKSATRKLRLPGKLTDCTRDAPGGTELFLVEGDSAGGSAKQARDRTTQ 356

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           A+LPLRGKILNV  A   K+  +QE+  L+ ALG G G   +   +LRY ++IIMTDADV
Sbjct: 357 AVLPLRGKILNVASAAAGKLAQNQELSDLLLALGCGAGSK-YREEELRYERVIIMTDADV 415

Query: 509 DGAHIRTLL 517
           DG+HIRTLL
Sbjct: 416 DGSHIRTLL 424


>gi|6729225|dbj|BAA89734.1| DNA gyrase subunit B [Micromonospora echinospora]
 gi|6729229|dbj|BAA89736.1| DNA gyrase subunit B [Micromonospora echinospora]
          Length = 393

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 182/397 (45%), Positives = 260/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   +      +PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYTASKP-SPLDK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFY 225
           + V F P  D+F   DF++ T+  RL+E++FLN  + I L+D+R PE      RE+T  Y
Sbjct: 59  SAVAFWPDPDVFETVDFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEDEDGRQREVTFCY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           KGGI  FV +L+  K P+ ++ +   G  + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 KGGIADFVRHLNASKNPIHKTVVEFAGEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSLVNKYGT-EKKLLKSDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   N+ L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKVIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|19912117|dbj|BAB88370.1| DNA gyrase subunit B [Cytophaga sp. MBIC01539]
          Length = 390

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 186/391 (47%), Positives = 253/391 (64%), Gaps = 9/391 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ LK  + R G I E  F  GI   P    G   +  GT + F
Sbjct: 1   VSGGLHGVGVSCVNALSTDLKATVYRNGVITEQEFKIGIPQYPAKQVG-TTDRRGTTIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEA 231
            P + IF++ ++ Y+T+ +RLRE+SFLN+ ++I L D    +     +    + +GG+  
Sbjct: 60  KPDASIFAITEYKYETIANRLREMSFLNAGIRIFLTDLRETEDDGSVKSDEFYSEGGLVE 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YLD  ++ ++ +PI I   ++ + + +AM +N  Y ENV+ + N I   +GG+H+SG
Sbjct: 120 FVQYLDVSREKIIDTPISIDTEKNGVPVQVAMNYNSSYSENVVSYVNTINTYEGGSHVSG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR + SY +KS    K K  V GDD REG T+V+S+K+ +P+F  QTK KL +S+
Sbjct: 180 FRRALTRTLKSYADKSGMLDKLKMEVSGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSD 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+S V++ L  WLEEHP EAKIIV KV+ A+  R AAR+AR++ +RK VL    LP
Sbjct: 240 VVGAVDSAVSEALQIWLEEHPKEAKIIVGKVILAAQARHAARKAREMVQRKNVLGGGGLP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC+  DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+A   K+  +
Sbjct: 300 GKLADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYDN 359

Query: 472 QEIGTLITALGTGIGQDSFDIN----KLRYH 498
           +EI  ++TALG  IG  + D       LRYH
Sbjct: 360 EEIKNILTALGVKIGTVNDDKELDLSSLRYH 390


>gi|225550647|ref|ZP_03771596.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379801|gb|EEH02163.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 245

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 105/250 (42%), Positives = 153/250 (61%), Gaps = 10/250 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      YD  +I+IL+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE +   
Sbjct: 1   MANK-----YDGSAIKILEGLEAVRKRPGMYIGSTSSA-GLHHLVWEIVDNSIDEVMNAN 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I+V L+ D S ++ D+GRGIP D++ +  IS  E ++T LHAGGKF++ +YK +GGL
Sbjct: 55  AKNISVVLHEDNSISILDDGRGIPVDINPQTKISTVETVLTVLHAGGKFDESAYKTAGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179
           HGVG SVVNALS+WL   + R+  IY+  F N G +D PL V G+    TGT + FLP  
Sbjct: 115 HGVGSSVVNALSAWLICEVYRDQKIYQAKFSNWGHIDQPLKVIGTTK-KTGTLIHFLPDP 173

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            IF    FN +T++ RL E +FL   ++IS  DK + +          G+  F+ +++  
Sbjct: 174 LIFKNLFFNPNTIKERLHESTFLIKDLKISFEDKINNKK--YEFINDQGLIDFIKFINET 231

Query: 240 KKPLMQSPIR 249
           KK        
Sbjct: 232 KKTFSDVIFF 241


>gi|283132389|dbj|BAI63600.1| DNA gyrase subunit B [Leptospira meyeri]
          Length = 391

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 185/393 (47%), Positives = 276/393 (70%), Gaps = 7/393 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS +L + + ++G  Y   +  GI  +P+ + G +  + GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLIVEVHQKGKYYTQKYAKGIPVSPVEMKGDSS-ERGTIV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229
            F P + IF+  DF +D L  R RE +FLN  + + + D+R              + GGI
Sbjct: 60  RFKPDASIFTTVDFQFDVLSARFREFAFLNKGLVLIVEDRRRGGEGENLLRNEFQFSGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +FV +++ +K P+    I  + ++D++  ++++++++ Y E++ CFTNNI    GGTHL
Sbjct: 120 VSFVEHINENKHPMH-KVIHFERNKDDVIAEISIQYSETYTESIFCFTNNINNNLGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            G R+ALTR +  +++K     K   +   G+D +EG T+V+S+K+P P+F+SQTKEKLV
Sbjct: 179 EGFRAALTRTLNDFLKKDTVLSKKHPTGLSGEDVKEGLTAVISVKIPQPQFNSQTKEKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E++ ++++  ++GL+ + EE+P   K I++K + ++  R+AAR+ARDLTRRK VL+  
Sbjct: 239 NAEIKGIMQTLTSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGG 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC+E+DP  SE++LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+
Sbjct: 299 GLPGKLADCAEKDPALSEIYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKI 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LSS+EI  L++ALGTGIG+D F+I+K+RYHKI+
Sbjct: 359 LSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|259018200|gb|ACV89692.1| DNA gyrase subunit B [Nocardia niigatensis]
          Length = 413

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 180/416 (43%), Positives = 253/416 (60%), Gaps = 31/416 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           +SY VSGGLHGVG+SVVNALS+ L+  +   G+ +   + +      L + G A   TGT
Sbjct: 1   ESYAVSGGLHGVGISVVNALSTRLEAEVDYGGHHWTQEYKDAKP-GKL-IQGEATKKTGT 58

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT--------- 222
            + F P  DIF    F+++T+  RL+E++FLN  + I+L D+R  E              
Sbjct: 59  TIRFFPDPDIFETTTFSFETVARRLQEMAFLNKGLTITLTDQRIHEGDITDEVVSETAEA 118

Query: 223 -------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                                Y GG+E +V +++R K P+  S +   G      +++AM
Sbjct: 119 PKHLDENAPAAEPKVKTRTYHYPGGLEDYVRHINRTKTPIHNSIVGFTGKGTGHEVEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+ + ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ DP+F  QTK KL ++EV+S V+   N+ +S W E +P +AK IV+K +
Sbjct: 239 EGLAAIVSVKIADPQFEGQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTIVQKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
               QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDINKLRYHK
Sbjct: 359 DSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDINKLRYHK 413


>gi|110624475|dbj|BAE98184.1| DNA gyrase B subunit [Shewanella algidipiscicola]
          Length = 368

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 216/371 (58%), Positives = 290/371 (78%), Gaps = 4/371 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ I+R+G +YE  + +G+ D P+ V G A   TGTE+ F PS++ 
Sbjct: 1   GVGVSVVNALSEKLQMTIRRDGKVYEQFYTHGVPDAPISVVGEAA-TTGTEIRFWPSNET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  +F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+ +K 
Sbjct: 60  FTDVEFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKT 117

Query: 242 PLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR +
Sbjct: 118 PVNKEVFHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRNL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+++   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NAYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + LS +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+
Sbjct: 238 GEQLSDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 298 DPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 357

Query: 481 LGTGIGQDSFD 491
           LG GIG+D +D
Sbjct: 358 LGCGIGRDEYD 368


>gi|62085676|gb|AAX63230.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 428

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 185/431 (42%), Positives = 255/431 (59%), Gaps = 38/431 (8%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GDA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V F P   IF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 217 --------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 NGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 SAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D F
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEF 417

Query: 491 DINKLRYHKII 501
           DI+KLRYHKI+
Sbjct: 418 DISKLRYHKIV 428


>gi|321401442|gb|ADW83183.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 359

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 166/359 (46%), Positives = 230/359 (64%), Gaps = 7/359 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
            +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKI
Sbjct: 301 VQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKI 359


>gi|188529730|gb|ACD62552.1| GyrB [Micromonospora sp. 18]
          Length = 393

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 182/397 (45%), Positives = 264/397 (66%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + GN++   + N    +PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMFVEIHKSGNVWRQHYTNSKP-SPLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN +++I L+D+R  E      RE+T +Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +  +   + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFEAEEEGMSLEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTG+  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGV-HDDFDMEKLRYHKVVL 393


>gi|109452316|dbj|BAE96355.1| DNA gyrase subunit B [Pasteurella pneumotropica]
          Length = 375

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 214/373 (57%), Positives = 274/373 (73%), Gaps = 2/373 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGV VSV NALS  L+L I+R+G+++E  +  G    PL         TGT V F P
Sbjct: 2   GGLHGVLVSVANALSDKLQLTIRRQGHVHEQFYHLGEPQTPLTTIIGDTEATGTSVLFWP 61

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S DIF++  F+Y  L  RLRELSFLNS V I L+DKR          Y+GGI+AFV YL+
Sbjct: 62  SPDIFAITTFDYKILAKRLRELSFLNSGVSIRLVDKRDGTE--DHFHYEGGIQAFVEYLN 119

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           ++K P+   P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALT
Sbjct: 120 KNKNPIHPKPFYFTTEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALT 179

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VE
Sbjct: 180 RSLNSYMENEGLLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVE 239

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S +N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC
Sbjct: 240 SAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E+DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTL
Sbjct: 300 QEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTL 359

Query: 478 ITALGTGIGQDSF 490
           ITALG  +G   +
Sbjct: 360 ITALGWALGVRIY 372


>gi|186920317|gb|ACC95420.1| DNA gyrase subunit B [Micromonospora sp. 57]
          Length = 393

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 182/397 (45%), Positives = 262/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPD-PLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFRPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|225547694|gb|ACN93660.1| DNA gyrase subunit B [Nocardia amamiensis]
          Length = 414

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 176/417 (42%), Positives = 249/417 (59%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  I R+G  +   + +      L V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEADILRDGYHWSQIYKDAAP-GKL-VQGEPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    ++F    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTIRFWADPEVFETTTYNFETVARRLQEMAFLNKGLTIKLTDERVSDSEVIDEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+P+  S +   G      +++A
Sbjct: 119 APKHAAENGGAAEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPHKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRY K
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYQK 414


>gi|327200357|gb|AEA36058.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|327200365|gb|AEA36062.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 358

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 247/358 (68%), Positives = 300/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S D F++ D+++ TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV Y
Sbjct: 61  LASPDTFTMTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIKQEELLYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+A
Sbjct: 121 LDRAKKPLVDKPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY E S   K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP +AKI+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|6729317|dbj|BAA89780.1| DNA gyrase subunit B [Micromonospora echinospora]
          Length = 393

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 182/397 (45%), Positives = 259/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   +       PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYTASKP-GPLDK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFY 225
           + V F P  D+F   DF++ T+  RL+E++FLN  + I L+D+R PE      RE+T  Y
Sbjct: 59  SAVAFWPDPDVFETVDFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEDEDGRQREVTFCY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           KGGI  FV +L+  K P+ ++ +   G  + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 KGGIADFVRHLNASKNPIHKTVVEFAGEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSLVNKYGT-EKKLLKSDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   N+ L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKVIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|327200359|gb|AEA36059.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 358

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 247/358 (68%), Positives = 300/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV Y
Sbjct: 61  LASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELLYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I+G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+A
Sbjct: 121 LDRAKKPLVDKPVAIKGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|188529764|gb|ACD62568.1| GyrB [Micromonospora sp. 37]
          Length = 393

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 183/397 (46%), Positives = 264/397 (66%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G+++   + N    +PL   G A + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMFVEIHKSGSVWRQHYTNSKP-SPLEK-GEATDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN +++I L+D+R  E      RE+T +Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +  +   + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFEAEEEGMSLEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSGVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP +SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPHESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|259018190|gb|ACV89687.1| DNA gyrase subunit B [Nocardia alba]
          Length = 415

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 174/418 (41%), Positives = 247/418 (59%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I  +G  +  ++ +      L   G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGYHWSQTYKDAKP-GKLAQ-GEATKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    DIF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTVRFWADPDIFETTTYNFETVARRLQEMAFLNKGLTIKLTDERVAVGDVIDEVVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+  FV +++R K  +  S +          +++
Sbjct: 119 APKDAEVVAAEAAEHKVKTRTYHYPGGLVDFVRHINRTKSAIHNSVVGYTVKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLQHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|186920217|gb|ACC95397.1| DNA gyrase B subunit [Gordonia effusa]
          Length = 420

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 184/423 (43%), Positives = 255/423 (60%), Gaps = 36/423 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L I   G  ++ ++ N + D PL   G+A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVELSIDYGGFHWDQTYHNAVPD-PLEK-GAATRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V+F P S+IF    FN +T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVSFWPDSEIFETTTFNAETVARRLQEMAFLNKGLTITLTDERLTDEAAEAEAEMGGTD 118

Query: 215 -----------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
                              + +  T  Y  G+  ++ +L+R K  +  S +   G     
Sbjct: 119 GEQTAEAIANKEEKADRVAKIKTRTYHYPDGLVDYIKHLNRTKNAIHSSVVGFTGKGTGH 178

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++AM+WN+GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    +
Sbjct: 179 EVEIAMQWNNGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLVKEKDGKL 238

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK+
Sbjct: 239 TGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKSFVQKMCNEHLAHWFESNPAEAKV 298

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I++K +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGG
Sbjct: 299 IIRKAVDSAQARMAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGG 358

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           SAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRY
Sbjct: 359 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIEKLRY 417

Query: 498 HKI 500
           HKI
Sbjct: 418 HKI 420


>gi|321401444|gb|ADW83184.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 359

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 166/359 (46%), Positives = 229/359 (63%), Gaps = 7/359 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
            +RK V     LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKI
Sbjct: 301 VQRKTVWGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKI 359


>gi|82409040|gb|ABB73302.1| gyrase beta subunit [Salinispora tropica]
          Length = 388

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 181/392 (46%), Positives = 256/392 (65%), Gaps = 9/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ + + I+++G ++  S+ +     PL   G + + TG+ V+F
Sbjct: 1   VSGGLHGVGVSVVNALSTRMAVEIQKDGYVWRQSYTDSKP-TPLEK-GESTDATGSAVSF 58

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIE 230
            P   +F    F++ T+  RL+E++FLN  + I  +D+R  E      RE+T  Y+GGI 
Sbjct: 59  WPDPRVFETVAFDFQTIYRRLQEMAFLNRGLTIHFLDERVDEGDDGKMREVTFCYQGGIA 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +L+  K  + +S +      D +S+++AM+WN+ Y E+V  F NNI   +GGTH  
Sbjct: 119 DFVRHLNASKTSIHKSVVEFGTEEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEE 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALT  I  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++
Sbjct: 179 GFRSALTSVINRYGA-EKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNT 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            V+S V+   N+ L  WL+ +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+
Sbjct: 238 PVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSM 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC   DP++ E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L 
Sbjct: 298 PGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 NNEVQALITALGTGI-HDDFDIEKLRYHKIVL 388


>gi|327200347|gb|AEA36053.1| DNA gyrase subunit B [Agrobacterium vitis]
 gi|327200349|gb|AEA36054.1| DNA gyrase subunit B [Agrobacterium vitis]
          Length = 358

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 249/358 (69%), Positives = 302/358 (84%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L ++I+R G ++EMSF +G+ D PL VTG     +GTE+TF
Sbjct: 1   VSGGLHGVGVSVVNALSVKLSMKIRRHGKVHEMSFTHGVADAPLAVTGDYQGRSGTEITF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS++ F+  +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV Y
Sbjct: 61  LPSTETFTQVEFDYGTLEHRLRELAFLNSGVRILLTDKRKSDIRQEEMLYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+ +P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRSKKPLVSNPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY + S  +KK+K ++ G+DCREG ++VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYADSSGITKKEKVTLQGEDCREGLSAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS W EEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALSTWFEEHPTEAKILVGKVVEAAVAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRERQAILPLRGKILNVERARFDKMLSSQE 358


>gi|308153108|dbj|BAJ22143.1| DNA gyrase subunit B [Pseudonocardia yunnanensis]
          Length = 404

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 183/405 (45%), Positives = 255/405 (62%), Gaps = 18/405 (4%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SY VSGGLHGVGVSVVNALS  L + I  +G ++   +   +   PL   G     TG+ 
Sbjct: 3   SYAVSGGLHGVGVSVVNALSVALDVEINTDGFVWRQHYARSVP-GPLRK-GEPTKRTGSS 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP-------------- 218
           VTF P  DIF    FN +T++ RL+E++FLN  + I L D+R+ +               
Sbjct: 61  VTFWPDGDIFETLTFNIETIRRRLQEMAFLNKGLTIVLRDERNGDNGEAEEPDAEGYVAK 120

Query: 219 -REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
            +E T  Y  G+E FV++L++ K P+ +  +      +  ++++AM+WN GY E+V  F 
Sbjct: 121 VKEYTFCYPNGLEDFVAHLNKSKDPIHKKLVAYTAEGEGHAVEVAMQWNSGYTESVYTFA 180

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G RSALT  +  Y       K+   ++ GDD REG  +++S+K+ +P
Sbjct: 181 NTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKEP 240

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL ++EV+S V+   N+ L+ W E +P EAK+IV K + ++  R AAR+AR+
Sbjct: 241 QFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPAEAKLIVNKAVQSAQARAAARKARE 300

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           L RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI
Sbjct: 301 LVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKI 360

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI++
Sbjct: 361 INVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHKIVL 404


>gi|62085684|gb|AAX63234.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 428

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 187/431 (43%), Positives = 256/431 (59%), Gaps = 38/431 (8%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++       PL   G A
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKP-GPLEK-GDA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V F P  DIF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDA 118

Query: 217 --------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 NGDEDAPATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 SAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKIIVKK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D F
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEF 417

Query: 491 DINKLRYHKII 501
           DI KLRYHKI+
Sbjct: 418 DIAKLRYHKIV 428


>gi|259018158|gb|ACV89671.1| DNA gyrase subunit B [Nocardia fluminea]
 gi|259018202|gb|ACV89693.1| DNA gyrase subunit B [Nocardia salmonicida]
 gi|294847488|gb|ADF43754.1| DNA gyrase subunit B [Nocardia cummidelens]
          Length = 415

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 174/418 (41%), Positives = 247/418 (59%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I  +G  +  ++ +      L   G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGYHWTQTYKDAKP-GKLAQ-GEATKATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    DIF    +N++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TTVRFWADPDIFETTTYNFETVARRLQEMAFLNKGLTIKLTDERVAVGDVIDEVVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+  FV +++R K  +  S +          +++
Sbjct: 119 APKDAEVVAAEAAEHKVKTRTYHYPGGLVDFVRHINRTKSAIHNSVVGYTVKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLQHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|259018160|gb|ACV89672.1| DNA gyrase subunit B [Nocardia farcinica]
 gi|259018164|gb|ACV89674.1| DNA gyrase subunit B [Nocardia exalbida]
          Length = 415

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 178/418 (42%), Positives = 255/418 (61%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALSS +++ I  +G  +  ++      + L V G   + TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKEATP-SKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+E FV +++R K+ +  S +   G      +++
Sbjct: 119 APKHGEPTGEAASEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 415


>gi|82409022|gb|ABB73293.1| gyrase beta subunit [Salinispora tropica]
          Length = 388

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 182/392 (46%), Positives = 257/392 (65%), Gaps = 9/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ + + I+++G ++  S+ +     PL   G + + TG+ V+F
Sbjct: 1   VSGGLHGVGVSVVNALSTRMAVEIQKDGYVWRQSYTDSKP-TPLEK-GESTDATGSAVSF 58

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIE 230
            P   +F   DF++ T+  RL+E++FLN  + I  +D+R  E      RE+T  Y+GGI 
Sbjct: 59  WPDPRVFETVDFDFQTIYRRLQEMAFLNRGLTIHFLDERVDEGDDGKMREVTFCYQGGIA 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +L+  K  + +S +      D +S+++AM+WN+ Y E+V  F NNI   +GGTH  
Sbjct: 119 DFVRHLNASKTSIHKSVVEFGTEEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEE 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALT  I  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++
Sbjct: 179 GFRSALTSVINRYGA-EKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNT 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            V+S V+   N+ L  WL+ +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+
Sbjct: 238 PVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSM 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC   DP++ E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L 
Sbjct: 298 PGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 NNEVQALITALGTGI-HDDFDIEKLRYHKIVL 388


>gi|291000712|ref|XP_002682923.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284096551|gb|EFC50179.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1457

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 143/705 (20%), Positives = 246/705 (34%), Gaps = 83/705 (11%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESG---------------------- 40
           +      Y   S++     + +  RP  Y+G  + + G                      
Sbjct: 47  NKTVEEIYQKKSLR-----EQILLRPDTYVGSVNMQEGEDMWIWDDEDKRMKMKTIKFVP 101

Query: 41  -LHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
            L+ +  E+L NA D S+     + I VT+N +    +V +NG GIP  +H E  I    
Sbjct: 102 ALYKIFDEILVNAADHSVRDETCNKIKVTINPEQNEISVYNNGAGIPVKIHAEHKIYVPT 161

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGI- 154
           +I   L     F+    +V+GG +G G  + N  S    +      E   +  ++   + 
Sbjct: 162 MIFGHLLTSSNFDDTQKRVTGGRNGYGAKLTNIFSEKFIVETVDSEEKKKFRQTWTQNME 221

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLI 211
            +    +T  +  ++ TE+TF P    F +   + D +   + R+ +L+       I + 
Sbjct: 222 KEEEPKITTCSKAESYTEITFYPDLSKFGMDKLDDDIVSLLKKRVYDLAGT-LKTGIGIY 280

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
                     T               +      +      G R  + I L+         
Sbjct: 281 LNGKKITGMKTF----------KDYVKLYTIDKEIHYFEDGKRWKVGITLS-----EGSM 325

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
             + F N+I    GG H+  + + ++  I   + K         ++     +      +S
Sbjct: 326 QQVSFVNSICTTKGGKHVDHIVNQVSDNIKKALVKKN------NTIKPAYIKNQLWVFVS 379

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             + +P F SQ+KE L +S                         K+  + VL  +  +  
Sbjct: 380 SLIINPSFDSQSKETLTTS------MKDFGSKCKLDEAFLKKVTKMASEAVLKYADFKSE 433

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRE 446
               +    +K  L   S      D   ++ +K  L L EGDSA     GG +  GR   
Sbjct: 434 KALNKKSGTKKSRLTGISKLDDANDAGSKNSEKCTLILTEGDSAKALAVGGLSVVGRD-- 491

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIMT 504
              + PL+GK LNV   + DK++ ++EI TL   LG    +     +   LRY  I+IM 
Sbjct: 492 YYGVFPLKGKPLNVRDCKLDKVVKNEEISTLAKILGLKFDKTYTKEDIKSLRYGSIMIMA 551

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGK--SLQYVKDEESLED 561
           D D DG+HI+ LL+ F  +  PSL+   GFL     P+   T  +             E 
Sbjct: 552 DQDHDGSHIKGLLINFIHKFWPSLLKIPGFLKEFITPIVKATNNRTKKAVTFFSIPEYET 611

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           +   + LS+           +  +      +    +    K F  + D      +V S  
Sbjct: 612 W--KEGLSDTKGWTIKYYKGLGTSTAPEAKEYFSNMSLHQKRFKYDTDCDKKITSVFSKA 669

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666
              E          +           K E S+   I+   IL  +
Sbjct: 670 ATDER-----KEWLNNHQEGTYIDHSKKEISYTDFIDKELILFSK 709


>gi|163256328|dbj|BAF95674.1| DNA gyrase subunit B [Bradyrhizobium sp. KO20A]
          Length = 261

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 151/260 (58%), Positives = 186/260 (71%)

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE+L G+A  + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q S
Sbjct: 1   DEALAGHASRVEVILNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNS 60

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEV
Sbjct: 61  YKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGKRGTEV 120

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           TFL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   MFY GG+E FV
Sbjct: 121 TFLASTETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMFYSGGVEEFV 180

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YLDR+KK L+ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R
Sbjct: 181 KYLDRNKKALVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFR 240

Query: 294 SALTRQITSYVEKSFGSKKD 313
            ALTRQ+  Y E +   +K 
Sbjct: 241 GALTRQVNGYAEANAKKEKI 260


>gi|19909705|dbj|BAB87048.1| DNA gyrase subunit B [Comamonas testosteroni]
          Length = 307

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 152/311 (48%), Positives = 196/311 (63%), Gaps = 32/311 (10%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISA 95
           LHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E   SA
Sbjct: 1   LHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPKRSA 59

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  +E+ F  G +
Sbjct: 60  AEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGRRHEIDFSRGFV 119

Query: 156 ------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
                        +P+ V G A +  GT+V FLP  +IF     F Y+ L  RLRELSFL
Sbjct: 120 QNRLIEVVDGAEVSPMRVVG-ASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFL 178

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD------- 255
           N+ V+I L D+R  +         GG++ FV +++  KK L  +     GSR        
Sbjct: 179 NNGVRIRLKDERDGKE--DDFSGAGGVKGFVQFINGTKKVLHPTTFHANGSRPAETYGGI 236

Query: 256 ---NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
               I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK
Sbjct: 237 PGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNEMAKK 296

Query: 313 DKRSVIGDDCR 323
            K  V GDD R
Sbjct: 297 AKVEVSGDDMR 307


>gi|308152487|dbj|BAJ22222.1| DNA gyrase subunit B [Corynebacterium amycolatum]
          Length = 427

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 189/430 (43%), Positives = 257/430 (59%), Gaps = 41/430 (9%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ ++  + R+G  +  +F   + +   +V G     +G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRMETEVIRDGYTWYQNFDQAVPEE--IVRGKKTRGSG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T   F P  +IF   DF +DT+  RLRE++FLN  + I+L+DKR                
Sbjct: 59  TTQRFWPDPEIFETTDFKFDTISRRLREMAFLNKGLTITLVDKRVSEEELEAEALAEQAE 118

Query: 216 -----------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
                                  P+ R     Y  G+  +V  L++ K  +  + I    
Sbjct: 119 TESAEIAKDAAEEQKEQAEKTTKPKERRKVFHYPNGLRDYVETLNKSKNIIHPTIISFDA 178

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
           + D   +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y  +    K+
Sbjct: 179 AGDGHEVEIAMQWNSGYSESVHTFANTINTIEGGTHEEGFRSALTSLMNRYAREHRLLKE 238

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            + ++ G+DCREG  +V+S+K+ DP+F  QTK KL ++EVRS V+   N+ +  WLE +P
Sbjct: 239 KENNLSGEDCREGLAAVISVKVADPQFEGQTKTKLGNTEVRSFVQRMTNEHIGHWLEANP 298

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAK IV K + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DPK+SELF+VEG
Sbjct: 299 AEAKAIVNKAIASAHARQAARKARDLVRRKSATDLGGLPGKLADCRSKDPKQSELFIVEG 358

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSAGGSAK GR+   QAILPLRGKILNVE+AR DK L + E+  +ITALGTGI  D FDI
Sbjct: 359 DSAGGSAKAGRNSLFQAILPLRGKILNVEKARLDKTLKNNEVQAIITALGTGI-HDEFDI 417

Query: 493 NKLRYHKIII 502
            KLRYHKI++
Sbjct: 418 EKLRYHKIVL 427


>gi|308153130|dbj|BAJ22154.1| DNA gyrase subunit B [Micromonospora violacea]
          Length = 393

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 262/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N     PL   G   + +G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQEYNNSKP-GPLDK-GETTDRSG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN +++I L+D+R  E      RE+T FY
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFFY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPIHKTVVEFDAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   N+ L  W + +P EAK+I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|308152479|dbj|BAJ22218.1| DNA gyrase subunit B [Rhodococcus globerulus]
 gi|308152481|dbj|BAJ22219.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 420

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 184/423 (43%), Positives = 253/423 (59%), Gaps = 34/423 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ ++L I   G+ +E ++       PL V G+A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGHHWEQTYNYAKP-GPL-VQGAATRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
           T V F    +IF    ++ +T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPEIFETTTYSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDEDT 118

Query: 217 -----------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
                            +PR  T  Y  G+  ++ +L+R K P+ QS I          +
Sbjct: 119 AEKPKTAEEEAVAPTVTKPRTRTYHYPDGLIDYIKHLNRTKTPIHQSVIGFTAKGTGHEV 178

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + G
Sbjct: 179 EIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLSG 238

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P EAKIIV
Sbjct: 239 DDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLGHWFEANPAEAKIIV 298

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           KK +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSA
Sbjct: 299 KKAVDSAQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSA 358

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           K GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHK
Sbjct: 359 KSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHK 417

Query: 500 III 502
           I++
Sbjct: 418 IVL 420


>gi|259018136|gb|ACV89660.1| DNA gyrase subunit B [Nocardia miyunensis]
          Length = 413

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 176/416 (42%), Positives = 253/416 (60%), Gaps = 30/416 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  I  +G+ +   + +      L + G +   TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQAEIDYDGHHWSQEYKDAKP-GKL-IQGESTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWADPNIFETTLFNFETVSRRLQEMAFLNKGLTITLTDERVTDSEVTEEVVSEHAE 118

Query: 215 -----------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +  T  Y GG+E FV +++R K+P+  + +   G      +++AM
Sbjct: 119 APKHAEEAPPVEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVAFTGKGTGHELEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K +
Sbjct: 239 EGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPTKSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
               QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 DSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 413


>gi|188529740|gb|ACD62557.1| GyrB [Micromonospora sp. 72]
          Length = 393

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 183/397 (46%), Positives = 262/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPD-PLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMYKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + EI  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEIQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|259018152|gb|ACV89668.1| DNA gyrase subunit B [Nocardia harenae]
          Length = 415

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 178/418 (42%), Positives = 256/418 (61%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I R+G+ +  ++ +      L + G A + TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVEIDRDGSHWSQTYKDASP-GKL-IQGDATSATG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    +IF   D+N++T+  RL E++FLN  + I L D+R                
Sbjct: 59  TTVRFWADPEIFETTDYNFETVSRRLHEMAFLNKGLTIKLTDQRVTAEQVTADEAGDTAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+E FV +++R K+P+  S +   G      +++
Sbjct: 119 APKQAEEAAAEQTEHKVKTRTYHYPGGLENFVRHINRTKQPIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L  W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQKTCNEHLQHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP+KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPQKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPIRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|71833776|emb|CAI94327.1| gyrase B [Helicobacter canadensis]
          Length = 366

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 176/371 (47%), Positives = 247/371 (66%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG+SVVNALS  L++ I + G IY  +F  GI  + L + G    D GT + F+P 
Sbjct: 1   GLHGVGISVVNALSKSLQMTIHKNGKIYRQNFAQGIPQDELNIIGECK-DNGTIIEFIPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             IF + +F  + L  R +EL++LN  V I   D+R           +GG+  FV+  D 
Sbjct: 60  DSIFEITEFQREILSKRFKELAYLNKQVTIHFKDERDGFNEIYHF--EGGLNQFVN--DL 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +KKPL+ + I  +G+ +++ I +A+ +N+G+ E VL F NNI   DGGTH SG R  LTR
Sbjct: 116 NKKPLISTIINFEGTENDVEIQIALAYNEGFEEKVLSFVNNIRTIDGGTHESGFRMGLTR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            IT+Y+E +  +++    + G+D REG  +++S+K+ DP+F  QTK KL S+ VR +V+ 
Sbjct: 176 VITNYIEANANAREKDSKITGEDIREGLVAIVSVKVIDPQFEGQTKGKLGSAFVRPIVQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + L+ + EE+P EAK I++K L A+  R+AA++AR+LTR+K    + +LPGKLADC 
Sbjct: 236 LTYEKLAKFFEENPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S+EI  LI
Sbjct: 296 SKDPSISEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLI 355

Query: 479 TALGTGIGQDS 489
           TALG GIG+D 
Sbjct: 356 TALGCGIGEDF 366


>gi|188529803|gb|ACD62587.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 180/397 (45%), Positives = 258/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLEK-GEETDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y ++V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVEIAMQWNESYGKSVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|4996784|dbj|BAA78437.1| subunit B protein of DNA gyrase [bacterium rJ12]
          Length = 303

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 150/307 (48%), Positives = 200/307 (65%), Gaps = 32/307 (10%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKE 90
              +GLHH+++EV+DN+IDE+L GY D I VT++ D S +V DNGRGIPT     D H E
Sbjct: 1   SDGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHSDNSISVLDNGRGIPTGVKMDDKH-E 59

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
              SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++R+G  +++ F
Sbjct: 60  PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKTLRLTVRRDGVTHQLDF 119

Query: 151 INGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLR 197
             G++             +P+ + G      GTEV FLP +DIF    DF+Y+ L  RLR
Sbjct: 120 SRGVVQNRQIDIVDGAEVSPMKIAGPTE-KRGTEVRFLPDTDIFKENHDFHYEILAKRLR 178

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-- 255
           ELSFLN  V+I L+D+RS +         GG++ FV +++  KK L  +P    GSR   
Sbjct: 179 ELSFLNHGVRIRLVDERSGKE--DDFSGAGGVKGFVEFINGTKKVLHPTPFHATGSRPAE 236

Query: 256 --------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                    I +++AM+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++
Sbjct: 237 SYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQN 296

Query: 308 FGSKKDK 314
             +KK K
Sbjct: 297 ELAKKAK 303


>gi|82409012|gb|ABB73288.1| gyrase beta subunit [Salinispora arenicola]
          Length = 388

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 182/392 (46%), Positives = 258/392 (65%), Gaps = 9/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ + + I+++G  +  S+ +    +PL   G + + TG+ V+F
Sbjct: 1   VSGGLHGVGVSVVNALSTRMAVEIQKDGYFWRQSYTDSKP-SPLEK-GESTDATGSAVSF 58

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIE 230
            P   +F   DF++ T+  RL+E++FLN  + I  +D+R       + RE+T  YKGGI 
Sbjct: 59  WPDPAVFETVDFDFQTIYRRLQEMAFLNRGLTIHFLDERVAADEDGKMREVTFCYKGGIA 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +L+  K P+ +S +      D +S+++AM+WN+ Y E+V  F NNI   +GGTH  
Sbjct: 119 DFVRHLNASKTPIHKSVVEFGTEEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEE 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  I  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++
Sbjct: 179 GFRAALTSVINRYGTD-KRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNT 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            V+S V+   N+ L  WL+ +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+
Sbjct: 238 PVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSM 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC   DP++ E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L 
Sbjct: 298 PGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 NNEVQALITALGTGI-HDDFDIEKLRYHKIVL 388


>gi|46367519|emb|CAG25881.1| DNA gyrase subunit B [Yersinia enterocolitica]
          Length = 346

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 202/349 (57%), Positives = 264/349 (75%), Gaps = 4/349 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV 
Sbjct: 60  WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|68445338|dbj|BAE03170.1| DNA gyrase subunit B [actinobacterium Aac-15]
          Length = 399

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 175/401 (43%), Positives = 253/401 (63%), Gaps = 11/401 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGV VSVVNALS  L + ++ EG+++  +++ G     L   G A ++TG
Sbjct: 1   GGGYAVSGGLHGVCVSVVNALSMRLTVAVRTEGHLWTQTYLRGEPTAVLAQ-GEAVSETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T V F    ++F    +N++TL  R +E++FLN  + I LID+R     E          
Sbjct: 60  TTVXFWADDEVFETTAYNFETLSRRFQEMAFLNRGLTIELIDERPEYKDEEGNPASVRYK 119

Query: 225 YKGGIEAFVSYLDRHK-KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y GGI  FV Y++  K + +    I          I+ +++++WN+ Y E+V  F N I 
Sbjct: 120 YDGGISDFVRYINAAKGELVHAQVIEFGSEDVERRIAAEVSLQWNNQYSESVYTFANGIN 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTH  G RSALT  +  Y +     K+   ++ G+D REG  +++S+K+ +P+F  
Sbjct: 180 TPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIISVKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E R+ V+    + ++ W + +P EAK IV+K + A+  R AAR+AR+LTRR
Sbjct: 240 QTKAKLGNTEARTFVQKITYEAIADWFDRNPNEAKDIVRKSIQAATARIAARKARELTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+  +LPGKLADC   +P + E+F+VEGDSAGGSAKQGR    QAI+P+RGKILNVE
Sbjct: 300 KGLLESMALPGKLADCQSTNPAECEIFVVEGDSAGGSAKQGRDPRTQAIMPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+  LI+ALGTGI  D FD++KLRYHKI++
Sbjct: 360 KARIDKVLQNTEVQGLISALGTGI-HDHFDVSKLRYHKIVL 399


>gi|308153052|dbj|BAJ22115.1| DNA gyrase subunit B [Arthrobacter nicotianae]
          Length = 412

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 170/414 (41%), Positives = 251/414 (60%), Gaps = 25/414 (6%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTG 170
             Y VSGGLHGVG+SVVNALS  +   ++R+G+ + + F NG      L   G     TG
Sbjct: 1   SGYAVSGGLHGVGISVVNALSEKVNTIVRRQGHAWRIGFANGGHTVQELTK-GEETELTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
           T  TF P  +IF   +F+++TL+ R ++++FLN  ++I+L D+                 
Sbjct: 60  TSQTFYPDPEIFETTEFDFETLRARFQQMAFLNKGLRITLTDERVQEIEEPEAEVEEEIE 119

Query: 214 -RSPEPREITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGSR--DNISIDLAMRWNDG 268
            +  +PR +   YK G+  +V +L+  +  + +    I  +       IS+++AM+W   
Sbjct: 120 NQVVKPRTVDYLYKDGLLDYVKHLNAAKKIELVHDEVIAFESEDAARGISLEIAMQWTSA 179

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  + N I   +GGTH  G R+ALT  +  Y   +   ++   ++ G+D REG T+
Sbjct: 180 YAESVHTYANTINTHEGGTHEEGFRAALTGLLNRYARDNKILREKDDNLTGEDAREGLTA 239

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ +P+F  QTK KL +S  R  V+  VN+ L  W E +P  A+ I++K   AS  
Sbjct: 240 VISVKLSEPQFEGQTKTKLGNSIARGFVQGVVNEELGDWFERNPNVARDIIRKAQLASQA 299

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+ARD  RRK  ++   +PGKL+DCS ++P + E+F+VEGDSAGGSAK+GR    Q
Sbjct: 300 RLAARKARDNARRKSPMESFGMPGKLSDCSSKNPSECEVFIVEGDSAGGSAKRGRDPHTQ 359

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKILNVERAR D+ L + E+  +ITA GTGIG++ FD+ KLRYHKI++
Sbjct: 360 AILPLRGKILNVERARLDRALGNAEVQAMITAFGTGIGEE-FDMAKLRYHKIVL 412


>gi|199974937|gb|ACH92123.1| DNA gyrase subunit B [Thiothrix sp. CT3]
          Length = 368

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 219/370 (59%), Positives = 287/370 (77%), Gaps = 2/370 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS+ L+L I+R G +++  +  G    PL + G     TGT V F PS++IF++ +F
Sbjct: 1   VNALSANLELTIRRNGKLHQQMYKLGDPVAPLAIIGDTE-GTGTSVRFWPSAEIFALTEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V+I LID+R  E RE    Y+GGI+AFV++L+R+K P+  + 
Sbjct: 60  HYDILAKRLRELSFLNSGVRIHLIDRR-GEGREDIFEYEGGIKAFVAHLNRNKSPIHNNI 118

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I     RD++ +++A++WND Y EN+ C+TNNIPQ+DGG+HLSG R+ALTR + SY+E +
Sbjct: 119 IYFTTERDDVGVEVALQWNDSYQENIYCYTNNIPQRDGGSHLSGFRAALTRTLNSYIESA 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK+K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +VE+ +N+ L  +
Sbjct: 179 GLAKKEKISPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVEAAMNERLGEF 238

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E P EAK+I  K+++A+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  SEL
Sbjct: 239 LLESPSEAKLIAGKMIEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPALSEL 298

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FLVEGDSAGGSAKQGR R  QAILPL+GKILNVERARFDKM+SSQE+GTLI ALG GIG+
Sbjct: 299 FLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMISSQEVGTLIIALGCGIGR 358

Query: 488 DSFDINKLRY 497
           + ++I KLRY
Sbjct: 359 EEYNIEKLRY 368


>gi|313768427|ref|YP_004062107.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599123|gb|ADQ91147.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
          Length = 1070

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 144/683 (21%), Positives = 252/683 (36%), Gaps = 74/683 (10%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDNA 52
           +SIQ L  ++ + KRP  Y+G  +  S                     L  +  E+L NA
Sbjct: 2   ESIQKLTHIEHILKRPDSYVGPVEQGSEPYWILDGSTFTKKNLKYSPALLKIFDEILVNA 61

Query: 53  IDE-SL-EGYADIITVTLNMD-GSCTVSDNGR--GIPTDLHKEEGISAAEVIMTRLHAGG 107
           ID  SL       I+VT++ D GS T+ +NG   GI   +H++EG+   E++   L    
Sbjct: 62  IDRNSLHPKNVSSISVTIDKDVGSVTIENNGPLGGISVKMHEKEGLWNPELVFGHLLTST 121

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDN-PLVVTGS 164
            ++    ++ GG +G G  + N  SS   + IK       Y   +   +    P  +   
Sbjct: 122 NYDDSQKRIVGGRNGYGAKLANIYSSDFSIIIKDHETKQTYTQKWSKNMTVCDPPKIKKH 181

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFN---YDTLQHRLRELS-FLNSSVQISLIDKRSPEPRE 220
           +G+ +   +TF P    F +   +   Y   Q R+ + +    S+ ++ L  +  P+   
Sbjct: 182 SGSTSSVSITFTPEWKRFGMSKMDDAIYSIFQKRVWDANICTTSNCKVKLNGEILPKQNF 241

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                                  ++      G R ++ I              + F N I
Sbjct: 242 EAYA--------------KMHEGIKDIASFNGDRWSVCI-----GPSENGLEQVSFVNGI 282

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
               GGTH+  + + +   I   + K       K  +     +  FT  +   + +P FS
Sbjct: 283 CTTKGGTHIDHVANHIASGIIDDMAK-------KIKLKPQQVKNTFTIFVKATLENPTFS 335

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQ K +          + F +           +    I  ++   S  ++     +    
Sbjct: 336 SQVKSECTLKA-----QDFGSKFEPPKNFVKNVLKTGIADELTALSKFKEMKELKKTDGA 390

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKI 457
           RK  +                  K  L + EGDSA   A  G S   R++  + PLRGK 
Sbjct: 391 RKSKITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKC 450

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
            NV  +   ++ S+QE   L   LG   G++  D+++LRY +++IMTDAD DG+HI+ L+
Sbjct: 451 KNVRDSSVAQLTSNQEFNDLKKILGLQQGKEYKDVSELRYGRLMIMTDADNDGSHIKGLI 510

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           L       PSL+   F+  +  P+   T+G   +    + +   +  +     +I+ +  
Sbjct: 511 LNMIHYFWPSLLKMNFVVSMVTPIIKATKGSDTKSFYTDSAFRTWYGSGKSGWKIKYYKG 570

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
                S          A +  K I+D     D   +    I   F+ +        L   
Sbjct: 571 LGTSTSAE--------AREYFKKIQDLTVKFDADTMTDDSIILAFDKKKADARKAWLLES 622

Query: 638 LANRLNFIAEKSEKSWHGSINNS 660
            A   N +          +I + 
Sbjct: 623 TAKEANQLEIPYGDVKQLNITDF 645


>gi|199974958|gb|ACH92124.1| DNA gyrase subunit B [Sphaerotilus natans subsp. natans]
          Length = 401

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 217/403 (53%), Positives = 289/403 (71%), Gaps = 24/403 (5%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163
           VSGGLHGVGVS VN LS WL+L ++R+G ++++ F  G+              +P+ VTG
Sbjct: 1   VSGGLHGVGVSCVNGLSKWLRLTVRRDGRVHQIEFRKGVPQDRVIERRDGVETSPMRVTG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              +  GTEV FLP ++IF   + F+YD L  RLRELSFLN+ V+I L+D+R+   +E  
Sbjct: 61  ET-DKRGTEVHFLPDTEIFQQNNEFHYDILAKRLRELSFLNNGVKIRLVDERNG-GKEDN 118

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFT 277
             Y GG++ FV ++++ K+ L  +     G +       I +++AM+WND + ENVLCFT
Sbjct: 119 FAYAGGVKGFVEFVNKGKRTLHPNIFHALGEKPSDQGTTIGVEVAMQWNDAFSENVLCFT 178

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+GLR+A+TR I  Y+E +  +KK K  + G+D REG   V+S+K+P+P
Sbjct: 179 NNIPQRDGGTHLTGLRAAMTRVINKYIEDNDIAKKAKVEISGEDMREGLACVVSVKVPEP 238

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEVR+ VE  V+  L+ WL E+P +AK I  K++DA+  RDAAR+AR+
Sbjct: 239 KFSSQTKDKLVSSEVRAPVEDIVSRLLTDWLLENPTDAKTICGKIVDAARARDAARKARE 298

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKI
Sbjct: 299 MTRRKGVLDGLGLPGKLADCQEKDPSLCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKI 358

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDS----FDINKLR 496
           LNVERAR++K+LSS EI TLITALGTGIGQ      F+ +KLR
Sbjct: 359 LNVERARYEKLLSSNEIITLITALGTGIGQGMGTDDFNPDKLR 401


>gi|188529770|gb|ACD62571.1| GyrB [Micromonospora sp. 65]
          Length = 393

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 255/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G A + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYNHSKP-TPLEK-GEATDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLTRGLTIHLLDDRVPEDEEGKTREVTFRY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +L+  K P+ ++ +        +S ++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 DGGIADFVRHLNASKNPIHKTVVEFGAEETGMSAEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGA-EKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR   RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNEPLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKPARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|308153112|dbj|BAJ22145.1| DNA gyrase subunit B [unidentified Actinobacteria KK10206C]
          Length = 406

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 179/408 (43%), Positives = 259/408 (63%), Gaps = 21/408 (5%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTE 172
           Y VSGGLHGVG SVVNALS+  ++ +K++G ++  SF +G      L   G A ++TGT 
Sbjct: 1   YAVSGGLHGVGSSVVNALSTRFEVEVKQKGYVWRHSFADGGTPQQSLEQ-GEATDETGTT 59

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------EP 218
           +TF P + IF+   +F+YDTL+ R ++++FLN  ++ISL D+R               + 
Sbjct: 60  ITFWPDATIFTETVEFDYDTLRTRFQQMAFLNKGLRISLSDERPASAYEIEEDGALVSKQ 119

Query: 219 REITMFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVL 274
                 Y+ G+  +V Y    R  +P+ +  I  +       IS+++AM+W   Y+ENV 
Sbjct: 120 PSDDFLYERGLVDYVEYLNKVRKTEPVSEEIIDFESEDTERKISLEVAMQWTTSYNENVF 179

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + N I   +GGTH  G R+ALT  +  Y   +   K+   ++ GDD REG T+V+SIK+
Sbjct: 180 TYANTINTHEGGTHEEGFRAALTSLVNRYARANNLLKEKDDNLSGDDVREGLTAVISIKL 239

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL ++E ++ V+  VN+ L  WL+ +P +AK +++K +DA+  R AAR+
Sbjct: 240 GEPQFEGQTKTKLGNTEAKTFVQKIVNEQLGDWLDRNPTQAKNVIRKAIDAATARLAARK 299

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+  RRK V + A++P KL DC+ +DP  SE+FLVEGDSAGGSA QGR    QAIL LR
Sbjct: 300 ARETARRKSVFESAAMPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALR 359

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           GKILNVERAR DK L+++E+  +I A GTGIG+D FDI K RYHKI++
Sbjct: 360 GKILNVERARLDKALANKEVQAMIQAFGTGIGED-FDIEKARYHKIVL 406


>gi|110624481|dbj|BAE98187.1| DNA gyrase B subunit [Shewanella algidipiscicola]
          Length = 368

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 216/371 (58%), Positives = 290/371 (78%), Gaps = 4/371 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L++ I+R+G +YE  + +G+ D P+ V G A   TGTE+ F PS++ 
Sbjct: 1   GVGVSVVNALSDKLQMTIRRDGKVYEQFYTHGVPDAPISVVGEAA-TTGTEIRFWPSNET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  +F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+ +K 
Sbjct: 60  FTDVEFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKT 117

Query: 242 PLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR +
Sbjct: 118 PVNKEVFHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRNL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+++   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NAYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + LS +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+
Sbjct: 238 GEQLSDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA
Sbjct: 298 DPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 357

Query: 481 LGTGIGQDSFD 491
           LG GIG+D +D
Sbjct: 358 LGCGIGRDEYD 368


>gi|6729186|dbj|BAA89726.1| DNA gyrase subunit B [Micromonospora chalcea]
 gi|188529728|gb|ACD62551.1| GyrB [Micromonospora chalcea]
 gi|188529785|gb|ACD62578.1| GyrB [Micromonospora chalcea]
 gi|188529801|gb|ACD62586.1| GyrB [Micromonospora chalcea]
 gi|188529807|gb|ACD62589.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 258/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLEK-GEETDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|259018144|gb|ACV89664.1| DNA gyrase subunit B [Nocardia jiangxiensis]
          Length = 413

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 176/416 (42%), Positives = 253/416 (60%), Gaps = 30/416 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  I  +G+ +   + +      L + G +   TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQAEIDYDGHHWSQEYKDAKP-GKL-IQGESTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    FN++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWADPNIFETTVFNFETVSRRLQEMAFLNKGLTITLTDERVTESEVTEEVVSEHAE 118

Query: 215 -----------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        + +  T  Y GG+E FV +++R K+P+  + +   G      +++AM
Sbjct: 119 APKHAEEAAPVEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVAFTGKGTGHELEVAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD R
Sbjct: 179 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K +
Sbjct: 239 EGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR
Sbjct: 299 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPTKSEIYIVEGDSAGGSAKSGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
               QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 DSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 413


>gi|308152493|dbj|BAJ22225.1| DNA gyrase subunit B [Mycobacterium aichiense]
          Length = 419

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 176/421 (41%), Positives = 248/421 (58%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS  L+  ++ +G  +  ++   +    L   G     TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSVRLEADVRTDGYEWFQTYDRSVP-GTLRQ-GEKTKKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTTYDFETIARRLQEMAFLNKGLTIELTDERVTPEQVVDEVVSDTAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K  +  S I   G  +   +++
Sbjct: 120 PKSAEEKAAEAIAPHKVKHRVFHYPGGLVDFVKHINRTKNSIQPSVIDFDGKGEGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDANLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFESNPTEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+ SEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRLSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD+ KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLAKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|6729215|dbj|BAA89729.1| DNA gyrase subunit B [Micromonospora echinospora]
          Length = 391

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 181/395 (45%), Positives = 259/395 (65%), Gaps = 9/395 (2%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +Y VSGGLHGVGVSVVNALS+ + + I ++G ++   +      +PL   G   + TG+ 
Sbjct: 1   AYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYTASKP-SPLDK-GETTDRTGSA 58

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKG 227
           V F P  D+F   DF++ T+  RL+E++FLN  + I L+D+R PE      RE+T  YKG
Sbjct: 59  VAFWPDPDVFETVDFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEDEDGRQREVTFCYKG 118

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI  FV +L+  K P+ ++ +   G  + +S+++AM+WN+ Y E+V  F N I   +GGT
Sbjct: 119 GIADFVRHLNASKNPIHKTVVEFAGEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGT 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL
Sbjct: 179 HEEGFRAALTSLVNKYGT-EKKLLKSDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++ V+S V+   N+ L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L+ 
Sbjct: 238 GNTPVKSFVQRVCNEWLVDWFDRNPAEAKVIITKASQAARARIAAQQARKLARRKSLLES 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D+
Sbjct: 298 GSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 VLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 391


>gi|4996830|dbj|BAA78460.1| subunit B protein of DNA gyrase [bacterium rA8]
          Length = 303

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 151/307 (49%), Positives = 199/307 (64%), Gaps = 32/307 (10%)

Query: 36  DGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKE 90
              +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E
Sbjct: 1   SDGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-E 59

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
              SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALSSWLKL ++REG  +E+ F
Sbjct: 60  PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDF 119

Query: 151 INGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLR 197
             G +             +P+ + G   +  GT+V FLP ++IF     F Y+ L  RLR
Sbjct: 120 SRGHVQNRLIEVVDGFEVSPMRIIGQT-DKRGTKVHFLPDTEIFKENHEFRYEILAKRLR 178

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-- 255
           ELSFLN+ V+I L D+R  + RE      GG++ FV +++  KK L  +     GSR   
Sbjct: 179 ELSFLNNGVRIRLKDER--DGREDDFSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRPAE 236

Query: 256 --------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                    I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++
Sbjct: 237 SYGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQN 296

Query: 308 FGSKKDK 314
             +KK K
Sbjct: 297 ELAKKAK 303


>gi|259018122|gb|ACV89653.1| DNA gyrase subunit B [Nocardia pseudovaccinii]
          Length = 416

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 176/419 (42%), Positives = 248/419 (59%), Gaps = 33/419 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  +  +G  +   + +      L + G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEADVDVDGYHWTQEYKDSKP-GKL-MQGDPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E   I         
Sbjct: 59  TTIRFWADPNIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVAETDVIDEVVSDTAE 118

Query: 223 ----------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                                   Y GG+E FV +++R K+ +  S +   G      ++
Sbjct: 119 APKHADPDAPAAPVEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVAFTGKGTGHELE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GD
Sbjct: 179 VAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P +AK IV 
Sbjct: 239 DIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLSHWFEANPADAKTIVN 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK
Sbjct: 299 KAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
            GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 SGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 416


>gi|6729182|dbj|BAA89724.1| DNA gyrase subunit B [Micromonospora carbonacea]
          Length = 390

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 257/394 (65%), Gaps = 9/394 (2%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N    +PL   G   + TG+ V
Sbjct: 1   YAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYANSKP-SPLEK-GETTDRTGSAV 58

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGG 228
            F P +D+F   DF++ T+  RL+E++FLN  + I L+D+R       + RE+T  YKGG
Sbjct: 59  AFWPDADVFETVDFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEGEEGKTREVTFCYKGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +GGTH
Sbjct: 119 IADFVRHLNASKTPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL 
Sbjct: 179 EEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLG 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++ V+S V+   N+ L  W + +P EAKII+ K   A+  R AA++AR L RRK +L+  
Sbjct: 238 NTPVKSFVQRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESG 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++
Sbjct: 298 SMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRV 357

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 LKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 390


>gi|308153170|dbj|BAJ22174.1| DNA gyrase subunit B [Mycobacterium nonchromogenicum]
          Length = 419

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 176/421 (41%), Positives = 244/421 (57%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y VSGGLHGVGVSVVNALS+ L+  I  +G  +  ++   +    L   G     TGT
Sbjct: 2   GAYSVSGGLHGVGVSVVNALSTRLEADINVDGYQWFQTYDKSVP-GTLRK-GEKTKKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI-------------------- 211
            + F    DIF    ++++T+  RL+E++FLN  + I L                     
Sbjct: 60  TIRFWADPDIFETTTYDFETVARRLQEMAFLNKGLTIELTDERVRVEEVVDEVVSDTAEA 119

Query: 212 ----------DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV++++R K  +  + I   G      +++
Sbjct: 120 PKTAEEQAAEATAPHKVKHRVFHYPGGLRDFVAHINRSKTAIHPTIIDFDGKGTGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD
Sbjct: 180 AMQWNGGYSESVHTFANTINTAEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L  W E +P EAK+I+ K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKVCNEQLGHWFEANPAEAKVIINK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSNDPTKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNNEVQAIITALGTGI-HDEFDISKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|188529783|gb|ACD62577.1| GyrB [Micromonospora sp. 90]
          Length = 393

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 262/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQKYHNSKPD-PLDK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F++EGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIIEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|145522376|ref|XP_001447032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414532|emb|CAK79635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1272

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 130/694 (18%), Positives = 248/694 (35%), Gaps = 56/694 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------G 40
           M        Y     + +  ++ + +RP  YIG     S                    G
Sbjct: 1   MRQKTIEEQY-----KKMTHIEHILQRPDTYIGSIQRTSEQMWIIQNGKMIQKEIEYVPG 55

Query: 41  LHHMIYEVLDNAIDE----SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
              +  E+L NA D     S +     I V +      ++ ++G  IP ++HKE  I   
Sbjct: 56  FFKIFDEILVNAADNLQRDSRQHKQSYIKVDIG--NEISIKNDGFPIPVEIHKEYQIYVP 113

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE-MSFINGIL 155
           E+I      G  F+    +V GG +G G  + N  S+   L +  +G  Y  + + N + 
Sbjct: 114 ELIFGVFLTGSNFDDTEKRVVGGRNGYGAKLTNVYSTEFTLEVC-DGKSYFKLVWNNNMS 172

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
           +  + +      D    +++ P    F +++   DT     R +  L       +   + 
Sbjct: 173 NKQIPIIKQIKKDPYVSISYKPDYKRFGMKEIESDTQALLTRRVYDLAG-----IYGNKI 227

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
                         + +V     ++  +      +   R  + +  +           + 
Sbjct: 228 SVYLNDEKIKINSFQKYVDLYLPNEGAIKIFDKDMTTPRWEVVVSYSPTQF-----QHVS 282

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F N I    GGTH++ +   + ++I + +  +   K     V     ++     ++  + 
Sbjct: 283 FVNAIYTAKGGTHVNYVTDKIIQEIQNEMNNNK--KYKSIEVQKYQIKQSLWVFINCLID 340

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P F SQTKE + +        +     ++    +  ++  II      A    DA    
Sbjct: 341 NPTFDSQTKENMTTKVSEFGGTNEEKFKVTEKFSKALIKTDIIETIFQQAKAKADAKLNK 400

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILP 452
           +    + G L          D  +++ +   L L EGDSA   A  G     R+   + P
Sbjct: 401 QLKGTKTGRLHGIEKLDDANDAGKKNSELCTLILTEGDSAKALAMAGIDIVGRDRYGVFP 460

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           L+GK+LNV  A   ++L ++EI  LI  +G    +   D+  LRY  ++IMTD D+DG+H
Sbjct: 461 LKGKLLNVREASLKQILQNEEIENLIKIIGLQKERQYTDLKSLRYGSVMIMTDQDIDGSH 520

Query: 513 IRTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           I+ L++ F     PSL+ + GFL     PL   T+G         +    +   + +   
Sbjct: 521 IKGLIINFIHHFWPSLVKYRGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQEEDIKTW 580

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631
              +    G     + + +  +        +    + D +         +   +      
Sbjct: 581 KIKYYKGLGTSDDQEAQEYFKNLRTHTIQFRYDGDDDDNSI-------DLCFNKKKANDR 633

Query: 632 VSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
               ++  + L     KSE  +   I+   I   
Sbjct: 634 KQWLAQYNHDLYVDHTKSELGYSEFIHKELIHFS 667


>gi|46367517|emb|CAG25880.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 346

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 202/349 (57%), Positives = 264/349 (75%), Gaps = 4/349 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV 
Sbjct: 60  WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLNKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|308152471|dbj|BAJ22214.1| DNA gyrase subunit B [Gordonia sputi]
 gi|308153198|dbj|BAJ22188.1| DNA gyrase subunit B [Gordonia sputi]
 gi|308153200|dbj|BAJ22189.1| DNA gyrase subunit B [Gordonia sputi]
          Length = 420

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 184/423 (43%), Positives = 252/423 (59%), Gaps = 34/423 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ ++L I   G  +E ++       PL V G+A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGYHWEQTYNYAKP-GPL-VQGAATRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
           T V F    +IF    ++ +T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPEIFETTTYSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDEDT 118

Query: 217 -----------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
                            +PR  T  Y  G+  ++ +L+R K P+ QS I          +
Sbjct: 119 AEKPKTAEEEAVAPTVTKPRTRTYHYPDGLIDYIKHLNRTKTPIHQSVIGFTAKGTGHEV 178

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + G
Sbjct: 179 EIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLSG 238

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P EAKIIV
Sbjct: 239 DDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLGHWFEANPAEAKIIV 298

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           KK +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSA
Sbjct: 299 KKAVDSAQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSA 358

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           K GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHK
Sbjct: 359 KSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHK 417

Query: 500 III 502
           I++
Sbjct: 418 IVL 420


>gi|259018110|gb|ACV89647.1| DNA gyrase subunit B [Nocardia thailandica]
          Length = 415

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 175/418 (41%), Positives = 248/418 (59%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALSS L+  I  +G  +   + +      L + G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSKLEAEIDNDGYHWTQVYKDAKP-GQL-IQGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTIRFWADPEIFETTTYNFETVSRRLQEMAFLNKGLTITLTDQRVSENDVTDEVVSETAE 118

Query: 223 ---------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                                  Y GG+  FV +++R K P+  S +   G      +++
Sbjct: 119 APKHAEEGAEAPAEPKVKTRTYHYPGGLVDFVRHINRTKTPIHNSVVGFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  ++P KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKEPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|256083186|ref|XP_002577830.1| DNA topoisomerase II [Schistosoma mansoni]
 gi|238663163|emb|CAZ34068.1| DNA topoisomerase II, putative [Schistosoma mansoni]
          Length = 1599

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 117/586 (19%), Positives = 217/586 (37%), Gaps = 56/586 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  YIG T  ++                      GL+ +  E+L NA
Sbjct: 36  YQKKTQLEHILLRPDSYIGSTLKDTQQMWVLDESQQHMVNRDITFSPGLYKIFDEILVNA 95

Query: 53  IDESLEGYA-DIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D  +       I + +N  +    + ++G+GIP   HK E      +I   L     ++
Sbjct: 96  ADNKVRDPTMSCIKIDINPAENMVRIWNDGKGIPVVHHKVENTYVPTLIFGHLLTSSNYD 155

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGND 168
               KV+GG +G G  + N  S    +    K     +   +++ +         +   +
Sbjct: 156 DTERKVTGGRNGYGAKLCNIFSKKFIVETSSKEYKKSFRQVWVDNMTKTSDPKILADKGE 215

Query: 169 TGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             T +TF P    F + +   DT      R  +++   + +++ L  KR P    +    
Sbjct: 216 DFTCITFYPDLSRFGMNELEQDTVSLFTRRAYDMAATCNGIKVFLNGKRLPIKNFVDYVN 275

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                    ++  +K       +  +       + +A+          + F N+I    G
Sbjct: 276 --------LFIKPNKDDADSVKVVYEAVNQRWQVAVAVSNT---GFQQVSFVNSIATTKG 324

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++ +   +  ++   V+K   S K    +     +      ++  + +P F SQTKE
Sbjct: 325 GTHINYVSDQIVNKLMDIVKKK--SGKSGVQIKPFQIKNHMWLFVNCLIENPTFDSQTKE 382

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
            +            +++       +  +   ++      A          +    +   L
Sbjct: 383 NMTLQIKSFGSTCTLSEKFIGQASKSGIVENVLSWIRFKAME----KMDKQCHKSKHSKL 438

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNV 460
                     +   ++  +  L L EGDSA      G    GR   N  + PLRGK+LNV
Sbjct: 439 KGIPKLDDANNAGTKNSSQCTLILTEGDSAKTLAVAGLGVVGRD--NYGVFPLRGKLLNV 496

Query: 461 ERARFDKMLSSQEIGTLITALGTGIG---QDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
             A   +++ + EI  LI  LG       + +  +  LRY KI+IMTD D DG+HI+ L+
Sbjct: 497 REASNKQIMENAEINALIKILGLQYKLKYESADTLKDLRYGKIMIMTDQDQDGSHIKGLI 556

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           + F     P+L+ +  +     P+  + +GK           E++ 
Sbjct: 557 INFVHCNWPNLLKHNVVEEFITPIVKVFKGKQEHSFYSLPEFEEWQ 602


>gi|46367521|emb|CAG25882.1| DNA gyrase subunit B [Yersinia frederiksenii]
 gi|46367527|emb|CAG25885.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 346

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 204/349 (58%), Positives = 266/349 (76%), Gaps = 4/349 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS + F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV 
Sbjct: 60  WPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRND--REDHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLNKNKTPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|46367515|emb|CAG25879.1| DNA gyrase subunit B [Yersinia bercovieri]
          Length = 346

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 204/349 (58%), Positives = 265/349 (75%), Gaps = 4/349 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS + F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV 
Sbjct: 60  WPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL ++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|188529781|gb|ACD62576.1| GyrB [Micromonospora sp. 88]
          Length = 393

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 180/397 (45%), Positives = 260/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D  L   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQKYHNSKPDA-LEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N     +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTSNTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|212659900|gb|ACJ37008.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 260

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 139/261 (53%), Positives = 185/261 (70%), Gaps = 2/261 (0%)

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+  S
Sbjct: 1   DEALAGHADSILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNS 60

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L L I R+G  Y+  ++ G    PL          GT +
Sbjct: 61  YKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTTL 119

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F P+ +IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R     Y+GGI +FV
Sbjct: 120 RFKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFV 178

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R
Sbjct: 179 EHLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFR 238

Query: 294 SALTRQITSYVEKSFGSKKDK 314
           +ALTR + +Y+E++  +++ K
Sbjct: 239 AALTRTLGNYIEQNGIARQAK 259


>gi|188529773|gb|ACD62572.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 180/397 (45%), Positives = 257/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLEK-GEETDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           +  +F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAASFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPTEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|51571551|emb|CAH18942.1| gyrase B [Corallococcus coralloides]
          Length = 366

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 195/369 (52%), Positives = 262/369 (71%), Gaps = 3/369 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGV+ VN LS W K+R++R G +YE S+  G+ +      G+     GT + F 
Sbjct: 1   SGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVSNGSPQEVGTTDKV-GTTIHFK 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV YL
Sbjct: 60  PDSTVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISSFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           ++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++AL
Sbjct: 118 NKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +V
Sbjct: 178 TRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGLV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLAD
Sbjct: 238 EQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLDGGGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI T
Sbjct: 298 CQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVT 357

Query: 477 LITALGTGI 485
           LITALGTGI
Sbjct: 358 LITALGTGI 366


>gi|47226022|emb|CAG04396.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1345

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 130/730 (17%), Positives = 250/730 (34%), Gaps = 88/730 (12%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 25  YQKKTQLEHILLRPDSYIGSVEPVTQQMWVYDEDVGLNCRDVTFVPGLYKIFDEILVNAA 84

Query: 54  DESLE-GYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++  + +  + +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 85  DNKQRDKTMSCIKVSIDVENNTIVIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 144

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    K     ++ ++ + +         S   + 
Sbjct: 145 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKESKKTFKQTWYDNMGRAGDANIRSFDGEE 204

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDK----RSPEPREIT 222
            T +TF P    F +   + DT   +  R  +++     +++    K             
Sbjct: 205 YTCITFRPDLAKFKMSILDKDTVALMTRRAYDIAGSTKGIRVYFNGKKLPVCCGFTCVDR 264

Query: 223 MFYKG-----------------------------------GIEAFVSYLDRHKKPLMQSP 247
             ++                                    G  ++V    + K   M + 
Sbjct: 265 WCHRKGEFTTSEKMCGLFNVCGHYMSLCEIRMIVFIFQVTGFRSYVDLYVKDKVDEMGNA 324

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + +     N   ++ +  ++   + V  F N+I    GG H+  +   +  ++   V+K 
Sbjct: 325 LNVVHEVVNERWEVCLTMSEKGFQQV-SFVNSIATTKGGRHVDYVADQVVSKLIEVVKKK 383

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +      V     +      ++  + +P F SQTKE +   +        ++D     
Sbjct: 384 NKAGVA---VKPFQVKNHMWLFVNCLVENPTFDSQTKENMTLQQKSFGSTCPLSDKFIKQ 440

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
                   + I+  V   +  +      +    +   +          D   ++     L
Sbjct: 441 -ATASGIVESIMNWVKFKAQSQL---NKKCSAVKHTKIKGVPKLDDANDAGGKNSIGCTL 496

Query: 428 FLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            L EGDSA      G    GR R    + PLRGK+LNV  A   +++ + EI  +I  LG
Sbjct: 497 ILTEGDSAKTLAVSGLGVVGRDR--YGVFPLRGKMLNVREASLKQIMENAEINNIIKILG 554

Query: 483 TGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
               ++  D      LRY KI+IMTD D DG+HI+ LL+ F     PSL+ + F+     
Sbjct: 555 LQYKKNYSDPESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHNFIEEFIT 614

Query: 540 PLYGITRGKSLQYVKDEESLEDYL-INQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           P+   +  K+            +     +       +    G  +  + + +  D  +  
Sbjct: 615 PIIKASHKKTQLSFYSIPEFSAWKESQANHKSWKIKYYKGLGTSTSQEAKEYFSDMQRHR 674

Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
              K   P  D+        S     E  + +   + ++   R + + E           
Sbjct: 675 IPFKYAGPEDDEAIT--LAFSKKKVEERKEWLTKFMINRRQRREHNLPEDYLYGQTTKYL 732

Query: 659 NSDILVKRIA 668
           + +  V +  
Sbjct: 733 SYNDFVNKEL 742


>gi|4996828|dbj|BAA78459.1| subunit B protein of DNA gyrase [bacterium rA7]
          Length = 295

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 149/299 (49%), Positives = 194/299 (64%), Gaps = 32/299 (10%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHK 89
           T   +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H 
Sbjct: 1   TSDGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH- 59

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
           E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALSSWLKL ++REG  +E+ 
Sbjct: 60  EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEID 119

Query: 150 FINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRL 196
           F  G +             +P+ + G   +  GT+V FLP ++IF     F Y+ L  RL
Sbjct: 120 FSRGHVQNRLIEVVDGFEVSPMRIIGQT-DKRGTKVHFLPDTEIFKENHEFRYEILAKRL 178

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD- 255
           RELSFLN+ V+I L D+R  + RE      GG++ FV +++  KK L  +     GSR  
Sbjct: 179 RELSFLNNGVRIRLKDER--DGREDDFSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRPA 236

Query: 256 ---------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                     I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E
Sbjct: 237 ESYGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIE 295


>gi|51571577|emb|CAH18955.1| gyrase B [Corallococcus coralloides]
          Length = 364

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 195/367 (53%), Positives = 260/367 (70%), Gaps = 3/367 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGV+ VN LS W K+R++R+G +YE  +  G+  +P V  G   +  GT + F P
Sbjct: 1   GGLHGVGVTCVNFLSEWFKVRVQRDGKVYEQGYARGVSTSPPVEVG-TTDKRGTLIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
              I    DFN++TL  RLREL+FLN+ + I + D+R+ +  +    + GGI +FV YL+
Sbjct: 60  DPTIMETADFNFETLSQRLRELAFLNAGLHIIIRDERTQKEHD--FKFDGGIASFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++ALT
Sbjct: 118 KAKEALHDKPVFIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE
Sbjct: 178 RTLNSYAEKGAVWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGLVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             VND L+++LEE+P  AK +V KV DA   R AAR+AR+  RRKGVLD   LPGKLADC
Sbjct: 238 QMVNDQLASFLEENPPVAKKVVAKVGDACRARIAARKARETVRRKGVLDGGGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
             RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TL
Sbjct: 298 QSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTL 357

Query: 478 ITALGTG 484
           ITALGTG
Sbjct: 358 ITALGTG 364


>gi|74025306|ref|XP_829219.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70834605|gb|EAN80107.1| DNA topoisomerase II, putative [Trypanosoma brucei]
          Length = 1424

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 137/702 (19%), Positives = 239/702 (34%), Gaps = 65/702 (9%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS       Y     Q     + +  RP MYIG  +  +                     
Sbjct: 1   MSGRTVEEIY-----QKKTQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCTWT 55

Query: 40  -GLHHMIYEVLDNAIDESLEG-YA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
            GL+ +  E+L NA D  +   +    I V ++   G   V +NG GIP   H+E  +  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREHDLWV 115

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+  ++     R    + M + N 
Sbjct: 116 PEMIFGHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRNN 175

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +L+N   V         T VTF P  + F+++ F  D +    R +  +         DK
Sbjct: 176 MLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQRRVYDIAG-----CTDK 230

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
                   T         +V       +    S       R  + +              
Sbjct: 231 SLCCYLNDTRIACRSFPEYVDLYPTMGEERKPSSYSRVNDRWEVCV-----RVSNVGFQQ 285

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           + F N+I    GGTH+  +   +  ++T         +K K  V     R      ++  
Sbjct: 286 VSFVNSIATTRGGTHVKYIVDQIIAKVTDQA-----MRKSKTEVKPHMIRPHLFIFVNSL 340

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDA 391
           + +P F SQTKE L + + R      +   L   + +  +  + +       +       
Sbjct: 341 IENPSFDSQTKETLNTPKARFGSTCDLPASLIDCVLKSSIVERAVEMANSRLNREMAMKM 400

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQ 448
               R        LD A+  G       +  ++  L L EGDSA      G    +R+  
Sbjct: 401 RNTNRKQILGIPKLDDANEAGG------KYSQRCTLILTEGDSAKALCTAGLAVENRDYF 454

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            + PLRGK LNV  A   K++   E   +   +G  + Q       LRY  ++IM+D D 
Sbjct: 455 GVFPLRGKPLNVRDASVKKVMGCAEFQAVSKIMGLDLSQKYTSTEGLRYGHLMIMSDQDH 514

Query: 509 DGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           DG+HI+ L++       P L+   GFL     P+    +           + E  +   S
Sbjct: 515 DGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKGR------GNNDEGTISFFS 568

Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627
           + +  E        I   +LR +        K  ++++ N D+  +         + +  
Sbjct: 569 MPDYFEWKNAVGEGIKNYELRYYKGLGTSGAKEGREYFENIDRHRLNFVYEDRKDDDDIV 628

Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
                    +    +      +  +   + N  ++       
Sbjct: 629 MAFAKDKVDERKRWITEFKANTNINESMNYNVRNVSYSEFVH 670


>gi|321401430|gb|ADW83177.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 357

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 164/357 (45%), Positives = 228/357 (63%), Gaps = 7/357 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
            +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRG
Sbjct: 301 VQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRG 357


>gi|327200367|gb|AEA36063.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 358

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 247/358 (68%), Positives = 300/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV Y
Sbjct: 61  LASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELLYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+ +P+ I G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+A
Sbjct: 121 LDRSKKPLVNTPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP +A+I+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|46367513|emb|CAG25878.1| DNA gyrase subunit B [Yersinia kristensenii]
          Length = 346

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 204/349 (58%), Positives = 262/349 (75%), Gaps = 4/349 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI AFV 
Sbjct: 60  WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL ++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY+ K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMGKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|4996836|dbj|BAA78463.1| subunit B protein of DNA gyrase [bacterium rA11]
          Length = 302

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 151/306 (49%), Positives = 199/306 (65%), Gaps = 32/306 (10%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEE 91
             +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E 
Sbjct: 1   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EP 59

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151
             SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALSSWLKL ++REG  +E+ F 
Sbjct: 60  KRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDFS 119

Query: 152 NGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRE 198
            G +             +P+ + G   +  GT+V FLP ++IF     F Y+ L  RLRE
Sbjct: 120 RGHVQNRLIEVVDGFEVSPMRIIGQT-DKRGTKVHFLPDTEIFKENHEFRYEILAKRLRE 178

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD--- 255
           LSFLN+ V+I L D+R  + RE      GG++ FV +++  KK L  +     GSR    
Sbjct: 179 LSFLNNGVRIRLKDER--DGREDDFSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRPAES 236

Query: 256 -------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                   I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++ 
Sbjct: 237 YGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNE 296

Query: 309 GSKKDK 314
            +KK K
Sbjct: 297 LAKKAK 302


>gi|19912119|dbj|BAB88371.1| DNA gyrase subunit B [marine CFB-group bacterium MBIC01599]
          Length = 390

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 185/391 (47%), Positives = 252/391 (64%), Gaps = 9/391 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ LK  + R G I E  F  GI   P   TG   +  GT + F
Sbjct: 1   VSGGLHGVGVSCVNALSTDLKATVYRNGVITEQEFKIGIPQYPAKETGKT-DRRGTTIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEA 231
            P   IF+V ++ Y+T+ +RLRE+++LN+ ++I L D    +    P+    + +GG+  
Sbjct: 60  KPDDSIFTVTEYKYETIANRLREMAYLNAGIRIFLKDLREIEEDGNPKSDEFYSEGGLVE 119

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YLD  ++ ++++PI I+    ++ + +AM +N  Y ENV+ + N I   +GGTH++G
Sbjct: 120 FVQYLDETREKIIEAPIYIESIDQDVPVQVAMSYNSSYSENVVSYVNTINTYEGGTHVTG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR + SY +KS    K K  V GDD REG T+V+S+K+ +P+F  QTK KL +S+
Sbjct: 180 FRRALTRTLKSYADKSGMLDKLKIEVSGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSD 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V   V+S V++ L  WLEEHP EAK IV KV+ A+  R AAR+AR++ +RK VL    LP
Sbjct: 240 VVGAVDSAVSEVLQTWLEEHPKEAKTIVGKVILAAQARHAARKAREMVQRKNVLGGGGLP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC+  DP   EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+A   K+  +
Sbjct: 300 GKLADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYDN 359

Query: 472 QEIGTLITALGTGIGQDSFDIN----KLRYH 498
            EI  ++TALG   G  + D       LRYH
Sbjct: 360 DEIKNILTALGVKFGTVNDDKELDLAGLRYH 390


>gi|19909703|dbj|BAB87047.1| DNA gyrase subunit B [Comamonas testosteroni]
          Length = 307

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 152/311 (48%), Positives = 197/311 (63%), Gaps = 32/311 (10%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISA 95
           LHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E   SA
Sbjct: 1   LHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKH-EPKRSA 59

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  +E+ F  G +
Sbjct: 60  AEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSIWLKLTVSRDGVRHEIDFSRGFV 119

Query: 156 ------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
                        +P+ V G A +  GT+V FLP  +IF     F Y+ L  RLRELSFL
Sbjct: 120 QNRLIEVVDGTEVSPMRVVG-ASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFL 178

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD------- 255
           N+ V+I L D+R  +         GG++ FV +++  KK L  +    +G+R        
Sbjct: 179 NNGVRIRLKDERDGKE--DDFSGAGGVKGFVEFINGTKKVLHPTTFYAEGTRPAETYGGI 236

Query: 256 ---NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
               I +++AM+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK
Sbjct: 237 PGTEIGVEVAMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNELAKK 296

Query: 313 DKRSVIGDDCR 323
            K  V GDD R
Sbjct: 297 AKVEVTGDDMR 307


>gi|4996812|dbj|BAA78451.1| subunit B protein of DNA gyrase [bacterium rM13]
          Length = 301

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 149/305 (48%), Positives = 194/305 (63%), Gaps = 32/305 (10%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEG 92
            +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E  
Sbjct: 1   GTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPK 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  YE+ F  
Sbjct: 60  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFSR 119

Query: 153 GIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLREL 199
           G +             +P+ V G + +  GT+V FLP  +IF     F Y+ L  RLREL
Sbjct: 120 GQVQNRLIEVVEGAEVSPMRVVGES-DKRGTKVHFLPDQEIFKENFDFRYEILAKRLREL 178

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD---- 255
           SFLN+ V+I L D+R  +         GG++ FV +++  KK L  +     GSR     
Sbjct: 179 SFLNNGVRIRLKDERDGKE--DDFSGAGGVKGFVEFINGTKKVLHPTAFHAMGSRPAETY 236

Query: 256 ------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                  I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +  
Sbjct: 237 GGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIESNDL 296

Query: 310 SKKDK 314
           +KK K
Sbjct: 297 AKKAK 301


>gi|327200353|gb|AEA36056.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|327200355|gb|AEA36057.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|327200361|gb|AEA36060.1| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
          Length = 358

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 246/358 (68%), Positives = 298/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV Y
Sbjct: 61  LASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQELLYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  PI I   +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+A
Sbjct: 121 LDRAKKPLVDKPIAIHSEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY + S   K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP EAKI++ KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALSTWLEEHPSEAKILIGKVVEAAVAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQE 358


>gi|198042668|gb|ACH81159.1| GyrB [Alteromonas sp. UST040801-002]
          Length = 327

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 190/328 (57%), Positives = 241/328 (73%), Gaps = 4/328 (1%)

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           AEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS LKLRI+R G  +E  + +G+ 
Sbjct: 1   AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSRLKLRIRRGGKAHEQEYHHGVP 60

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             PL VTG   + TGT + F PSSD F+   ++YD L  RLRELSFLNS V I L D+R 
Sbjct: 61  QAPLAVTGDT-DKTGTMIRFWPSSDTFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVL 274
            +       Y+GGI+AFV YL+  K P+ Q          D I++++AM+WND + ENV 
Sbjct: 120 GKE--DHFMYEGGIKAFVEYLNEKKTPVHQKVFHFSSEQEDGIAVEVAMQWNDSFQENVF 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK   +KK K +  GDD REG T+V+S+K+
Sbjct: 178 CFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKV 237

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEVR  VES +N+ L+ +L E+P E+KII  K++DA+  R+AAR+
Sbjct: 238 PDPKFSSQTKDKLVSSEVRPAVESAMNEKLAEFLLENPAESKIIAGKIIDAARAREAARK 297

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDP 422
           AR++TRRKG LD+A LPGKLADC E+DP
Sbjct: 298 AREMTRRKGALDLAGLPGKLADCQEKDP 325


>gi|327200363|gb|AEA36061.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 358

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 246/358 (68%), Positives = 299/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S D F++ D+++ TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV Y
Sbjct: 61  LASPDTFTMTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIKQEELLYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+A
Sbjct: 121 LDRAKKPLVDKPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY E S   K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP +AKI+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA
Sbjct: 241 VESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRKGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS QE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSXQE 358


>gi|308152503|dbj|BAJ22230.1| DNA gyrase subunit B [Mycobacterium aurum]
          Length = 419

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 182/421 (43%), Positives = 255/421 (60%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I+ +G+ +  ++   +    L   G     TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIRTDGSEWFQTYEYSVP-GTLRQ-GEKTKKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    +IF   D++++T+  RL+E++FLN  + I L+D+R                 
Sbjct: 60  TIRFWADPEIFETTDYDFETIARRLQEMAFLNKGLTIDLVDERVAADEVTDEIVSDTAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+  FV +++R K P+ QS I   G      +++
Sbjct: 120 PKSADEKEAEAKAPHKVKHRTYHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGPGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K+   ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTTVVNKYAKDKKLLKEKDANLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFESNPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+ SE+++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPRLSEVYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI+
Sbjct: 360 GRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|259018198|gb|ACV89691.1| DNA gyrase subunit B [Nocardia yamanashiensis]
          Length = 414

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 174/417 (41%), Positives = 247/417 (59%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  +   G  +   + +      L V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEVDHAGYHWTQEYKDAKP-GKL-VQGEPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDQRVSEGDITDEVVSDTAE 118

Query: 223 --------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                                 Y GG+E +V +++R K P+  S +   G      +++A
Sbjct: 119 APKHLDENAPAAEPKVKTRTYHYPGGLEDYVKHINRTKTPIHNSIVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+ + ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ DP+F  QTK KL +++V+  V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVADPQFEGQTKTKLGNTDVKGFVQRTCNEHLTHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHK 414


>gi|188529738|gb|ACD62556.1| GyrB [Micromonospora sp. 63]
 gi|188529760|gb|ACD62566.1| GyrB [Micromonospora sp. 49]
          Length = 393

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 180/397 (45%), Positives = 261/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D+     G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDSLDK--GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|270283844|ref|ZP_05965087.2| putative DNA gyrase subunit B [Bifidobacterium gallicum DSM 20093]
 gi|270277550|gb|EFA23404.1| putative DNA gyrase subunit B [Bifidobacterium gallicum DSM 20093]
          Length = 792

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 105/244 (43%), Positives = 145/244 (59%), Gaps = 31/244 (12%)

Query: 1   MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56
           M+ +      NS YDADS+ +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+
Sbjct: 1   MTTSSQSATHNSGYDADSLVVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEA 59

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G  D ITVTL+ DGS  V+DNGRGIP D+  +  +S  EV++T+LHAGGKF   SY  
Sbjct: 60  LAGACDHITVTLHTDGSIEVADNGRGIPVDIEPKTKLSGVEVVLTKLHAGGKFGSSSYNA 119

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--------------------- 155
           SGGLHGVG SVVNALSS L + + R+G  + M+F  G                       
Sbjct: 120 SGGLHGVGSSVVNALSSRLDVEVDRDGKTHHMAFHKGHPGVYTDADPSQPSPDSPFKKTR 179

Query: 156 ---DNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISL 210
                 L + G      TGT + +    +IF+    FNY+ L  R+R+ SFL   ++I++
Sbjct: 180 KNRPTELEIIGKVPPKRTGTRIRYWADPEIFNDTAQFNYEQLIDRVRQTSFLVPGLKITV 239

Query: 211 IDKR 214
           ID+ 
Sbjct: 240 IDEH 243



 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 131/438 (29%), Positives = 206/438 (47%), Gaps = 35/438 (7%)

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-------------- 256
              +    R     + GG+  FV +L       + S  RI G                  
Sbjct: 325 TQSQPGHRRVEEFVHTGGVTDFVDFLTVG--EPISSIWRITGEGTYKEETQSVDANGDLH 382

Query: 257 -------ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF- 308
                    +D+A+RW +GY   +  F N +     GTH+ G   ++T+ +   VE +  
Sbjct: 383 AEQVTRTCGVDIALRWTNGYDTIMRSFVNVVETPGNGTHVDGFLQSVTKLVRKAVEDNAR 442

Query: 309 ----GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K  K  V  DD   G  +V+++++ +P+F  QTK+ L ++ V+ VV+   +   
Sbjct: 443 KLKVNLKDSKMKVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAPVKGVVQRMSDKQF 502

Query: 365 SAWLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           +  +       K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   
Sbjct: 503 AEMITGAKRGFKEQSMRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPSKLSDCQPG 562

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +   +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  
Sbjct: 563 NDDVAELFIVEGDSALGTAKAARNSSFQALLPIRGKILNVQKASLAQMLSNKECAAIIQV 622

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G G   FD+++ RY+K+I+MTDADVDGAHIRTLLLT F+R M  L+  G +Y   PP
Sbjct: 623 VGAGSGAT-FDLDQARYNKVIMMTDADVDGAHIRTLLLTLFYRYMRPLVDAGHVYAAVPP 681

Query: 541 LYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           L+ I     +  QY+      E       L  +   +             +    A    
Sbjct: 682 LHRIALNASRKGQYIYTYSDDELAGKLAELDAQGITYDPDIQRYKGLGEMDADQLADTTM 741

Query: 599 KLIKDFYPNHDKTFIEQA 616
                          +QA
Sbjct: 742 DPRSRMLRRITAVEAQQA 759



 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 4/94 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G  I       L   +  +  +GI+    +QRYKGLGEM+A QL +TT++P +R L R
Sbjct: 691 RKGQYIYTYSDDELAGKLAELDAQGITYDPDIQRYKGLGEMDADQLADTTMDPRSRMLRR 750

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           +   +A QA+++FS LMGDEV PRR+FI +N+  
Sbjct: 751 ITAVEAQQANEIFSLLMGDEVPPRRQFIVDNAND 784


>gi|294963322|gb|ADF50148.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 174/363 (47%), Positives = 250/363 (68%), Gaps = 2/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    
Sbjct: 1   VNALSTTLDVTVYRDGKIHHQQFKRGVPVGDLKIIGET-DVTGTTTHFVPDPEIFTETIE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + 
Sbjct: 60  FDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEE 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ I+G +D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K
Sbjct: 120 PVYIEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARK 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ +S  ++ L  
Sbjct: 180 NGVFKDGDSNLSGEDVREGLTAIISIKHPNPQFEGQTKTKLGNSEARTITDSLFSEALEK 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  AK IV+K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE
Sbjct: 240 FLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG
Sbjct: 300 LYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIG 359

Query: 487 QDS 489
           +D 
Sbjct: 360 EDF 362


>gi|213028171|ref|ZP_03342618.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 290

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 143/289 (49%), Gaps = 7/289 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
            RYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + +GK  QY+K
Sbjct: 2   ARYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIK 61

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+E+++ Y I+ +L             +S   L   + +     K+I        K  ++
Sbjct: 62  DDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRMERRFPKALLK 121

Query: 615 QAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRI 667
           + V           D++      + L   LN   +     K +   +   N  + +V+  
Sbjct: 122 ELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQNLFEPIVRVR 181

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             GV   + L+   +     +       ++         +     +  +T     L+ + 
Sbjct: 182 THGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTSFEQALEWLV 241

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
              R+G+++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD L
Sbjct: 242 KESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQL 290


>gi|308153190|dbj|BAJ22184.1| DNA gyrase subunit B [Corynebacterium callunae]
          Length = 432

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 182/435 (41%), Positives = 260/435 (59%), Gaps = 46/435 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++  IK  G  +  +F N + D  +   G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEADIKLHGKHWYQNFTNSVPDELIE--GGNARGTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T + F P ++IF   +F+++T+  RL+E++FLN  + I+L D R+ +             
Sbjct: 59  TTIRFWPDAEIFETTEFDFETISRRLQEMAFLNKGLTITLTDSRATDQELELEALAEQGE 118

Query: 222 ----------------------------------TMFYKGGIEAFVSYLDRHKKPLMQSP 247
                                                Y  G+  +V+YL+R K  +  S 
Sbjct: 119 TAPELSLDELDNETELVEEAGDAPKKPKKREKKKVFHYPNGLGDYVNYLNRSKTVIHPSI 178

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +  +   ++  +++AM+WN  Y E+V  F N I   +GGTH  G RSALT  +  Y  + 
Sbjct: 179 VAFEAKGEDHEVEIAMQWNSSYKESVHTFANTINTHEGGTHEEGFRSALTSLMNRYAREH 238

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K+ + ++ GDDCREG ++++S+++ DP+F  QTK KL ++E++S V+   N+ +  W
Sbjct: 239 KLLKEKEANLTGDDCREGLSAIISVRVGDPQFEGQTKTKLGNTEIKSFVQRMTNEHVGHW 298

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LE +P EAK+I+ K + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP+KSEL
Sbjct: 299 LEANPAEAKVIINKAVGSAQARMAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSEL 358

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  
Sbjct: 359 YIVEGDSAGGSAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-H 417

Query: 488 DSFDINKLRYHKIII 502
           D FDINKLRYHKI++
Sbjct: 418 DEFDINKLRYHKIVL 432


>gi|188529787|gb|ACD62579.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 258/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLEK-GEETDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHRTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|188529753|gb|ACD62563.1| GyrB [Micromonospora sp. 19]
          Length = 393

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 179/397 (45%), Positives = 255/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + +      L   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQKYAHSKPSA-LEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN  + I L+D R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRGITIHLLDTRVPEGEEGKTREVTFRY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +L+  K P+ ++ +      + ++++ AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 DGGIADFVRHLNASKNPMHKTVVEFDAEEEGMALETAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|259018104|gb|ACV89644.1| DNA gyrase subunit B [Nocardia vermiculata]
          Length = 415

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 174/418 (41%), Positives = 251/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ + + I  +G  +   + +      L V G     TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMVVDIDTDGYHWTQEYKDAKP-GKL-VQGDPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T   F    ++F    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTQRFWADPNVFETTVYNFETISRRLQEMAFLNKGLTITLTDERVTEAEVTSEVVSEKAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                         P+ +  T  Y GG+E FV +++R K+P+  S +          +++
Sbjct: 119 APKTDEEVASEAAEPKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTSKGTGHELEI 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPAKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITA GTGI  D FDI+KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQAIITAFGTGI-HDEFDISKLRYHK 415


>gi|327200385|gb|AEA36072.1| DNA gyrase subunit B [Sinorhizobium meliloti]
          Length = 358

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 258/358 (72%), Positives = 301/358 (84%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D PL VTG AG +T TEVT 
Sbjct: 1   VSGGLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAGGETRTEVTL 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS   FS  +F + TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV+Y
Sbjct: 61  TPSEQTFSNIEFEFGTLEHRLRELAFLNSGVRIVLTDKRHSDIRQEEMMYDGGLEAFVAY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+Q P+ I G RD I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A
Sbjct: 121 LDRAKKPLVQKPVSICGERDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP +AKI+V KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLA
Sbjct: 241 VESLVNEALSVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 358


>gi|71833794|emb|CAI94336.1| gyrase B [Helicobacter pametensis]
          Length = 366

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 168/371 (45%), Positives = 250/371 (67%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + IKR+GNIY   F  GI  + L + G    + GT + F P 
Sbjct: 1   GLHGVGVSVVNALSRHLIMTIKRDGNIYRQEFKQGIPTSNLEIIGQTK-EHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            ++  V +F+ + L  R +E+++LN ++ IS  D+++ +  +     +GG++ FV   D 
Sbjct: 60  GEVMEVLEFDAEILIKRFKEMAYLNHNITISFTDEKTGKREKYHF--EGGLKQFVE--DI 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +KKPL+   I    + + +  ++A+ +N+GY E +L F NNI   +GGTH +G R+ L+R
Sbjct: 116 NKKPLISEIISFDINDEELEAEIALAYNEGYDEKLLSFVNNIRTPEGGTHEAGFRAGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V GDD REG  +++S K+ +P+F  QTK KL SS V+ +V+ 
Sbjct: 176 AILNYIEANANAREKDAKVTGDDVREGLVAIISTKVMEPQFEGQTKGKLGSSFVKPIVQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + L+ + EE+P++AK I++K L A+  R+AA++AR+LTR+K  L + +LPGKLADC 
Sbjct: 236 LTYEKLTKFFEENPIQAKAIMQKALLAARGREAAKKARELTRKKETLSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S+EI  +I
Sbjct: 296 SKDPSESEIYLVEGDSAGGSAKQGRDRAYQAILPLRGKILNVEKSRLDKILKSEEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G GIG++ 
Sbjct: 356 TAFGCGIGEEF 366


>gi|308153172|dbj|BAJ22175.1| DNA gyrase subunit B [Pseudonocardia hydrocarbonoxydans]
          Length = 405

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 180/408 (44%), Positives = 252/408 (61%), Gaps = 19/408 (4%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVGVSVVNALS  L   I  +G ++   +   I   PL   G A   TG
Sbjct: 1   SDSYAVSGGLHGVGVSVVNALSVALDAEIHTDGFVWRQHYARSIP-GPLRK-GEATTRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           + +T+    DIF    +N +T++ RL+E++FLN  + + L D+R+ E             
Sbjct: 59  SSITYWADPDIFETTTYNLETIRRRLQEMAFLNKGLTMVLRDERNGEANHDAEEPDAEGY 118

Query: 222 -------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                     Y  G+E FV++L++ K P+ +  +   G  D  ++++AM+WN GY E+V 
Sbjct: 119 VAKTVENVYCYPNGLEDFVAHLNKSKDPIHKKLVSFSGEADGHALEVAMQWNSGYTESVY 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N I   +GGTH  G RSALT  +  Y       K    ++ GDD REG  +++S+K+
Sbjct: 179 TFANTINTHEGGTHEEGFRSALTSTVNRYARAQKLLKDKDPALSGDDIREGLAAIVSVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAKIIV K + ++  R AAR+
Sbjct: 239 KEPQFEGQTKTKLGNTEVKSFVQRVSNEWLTDWFERNPAEAKIIVNKSVQSAQARAAARK 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+L RRK   DI  LPGKLADC   DP +SE+++VEGDSAGGSAK GR    QAILP+R
Sbjct: 299 ARELVRRKSATDIGGLPGKLADCRSTDPVRSEVYIVEGDSAGGSAKSGRDSMFQAILPIR 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           GKI+NVE+AR D++L + E+  +ITALGTGI  D FD++KLRYHK+++
Sbjct: 359 GKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLSKLRYHKVVL 405


>gi|188529749|gb|ACD62561.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 180/397 (45%), Positives = 257/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLEK-GEETDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D  EG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDERLSGEDICEGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|83367166|gb|ABC17642.1| putative DNA topoisomerase IIbeta [Trypanosoma brucei]
 gi|261335184|emb|CBH18178.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1465

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 139/699 (19%), Positives = 238/699 (34%), Gaps = 83/699 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS       Y     Q     + +  RP MYIG  +  +                     
Sbjct: 42  MSGRTVEEIY-----QKKTQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCTWT 96

Query: 40  -GLHHMIYEVLDNAIDESLEG-YA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
            GL+ +  E+L NA D  +   +    I V ++   G   V +NG GIP   H+E  +  
Sbjct: 97  PGLYKIFDEILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREHDLWV 156

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+  ++     R    + M + N 
Sbjct: 157 PEMIFGHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRNN 216

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +L+N   V         T VTF P  + F+++ F  D +    R +  +         DK
Sbjct: 217 MLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQRRVYDIAG-----CTDK 271

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
                   T         +V       +    S       R  + +              
Sbjct: 272 SLCCYLNDTRIACRSFPEYVDLYPTMGEERKPSSYSRVNDRWEVCV-----RVSNVGFQQ 326

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           + F N+I    GGTH+  +   +  ++T         +K K  V     R      ++  
Sbjct: 327 VSFVNSIATTRGGTHVKYIVDQIIAKVTDQA-----MRKSKTEVKPHMIRPHLFIFVNSL 381

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDA 391
           + +P F SQTKE L + + R      +   L   + +  +  + +       +       
Sbjct: 382 IENPSFDSQTKETLNTPKARFGSTCDLPASLIDCVLKSSIVERAVEMANSRLNREMAMKM 441

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQ 448
               R        LD A+  G       +  ++  L L EGDSA      G   ++R+  
Sbjct: 442 RNTNRKQILGIPKLDDANEAGG------KYSQRCTLILTEGDSAKALCTAGLGVKNRDYF 495

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            + PL GK LNV      K   + EI ++   +G    Q       LRY  ++IM+D D 
Sbjct: 496 GVFPLAGKPLNVRDVSLKKASENSEIISICKIMGLDFNQKYTSTEGLRYGHLMIMSDQDH 555

Query: 509 DGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSL---------QYVKDEES 558
           DG+HI+ L++       P L+   GFL     P+    +               + D   
Sbjct: 556 DGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKGRGNSDEGTISFFSMPDYFK 615

Query: 559 LEDYLINQSLSEEIELFCDSK-----------GVISKNDLRNFIDDALKIDKLIKDFYP- 606
            ++ +       E++ +                 I ++ L    +D    D ++  F   
Sbjct: 616 WKNAVGEGISDYEVKYYKGLGTSSAKEGREYFENIDRHRLNFVYEDRKDDDSIVLAFAKD 675

Query: 607 ---NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
                 +  +E    +  F   S    +VS +  +   L
Sbjct: 676 KVDERKRWVMESMSSARRFESLSYNARDVSYSEFVHKEL 714


>gi|190148854|gb|ACE63402.1| DNA gyrase B subunit [Pseudonocardia oroxyli]
          Length = 395

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 174/398 (43%), Positives = 242/398 (60%), Gaps = 18/398 (4%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y VSGGLHGVGVSVVNALSS L + I  +G  +   + + +    L   G+    TGT +
Sbjct: 1   YAVSGGLHGVGVSVVNALSSALDVEIHVDGFTWNQHYDHSVP-GTLHK-GAPSKRTGTSI 58

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----------- 222
           TF     IF    ++ +T+Q RL+E++FLN  + I L D+R  +                
Sbjct: 59  TFWADPTIFETTTYSLETIQRRLQEMAFLNKGLTIVLRDERVSDTEVDDEPDAEGFVAKV 118

Query: 223 ----MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y GG+E FV++++R K  + +  I   G      +++AM+WN GY E+V  F N
Sbjct: 119 KEQTFHYPGGLEDFVAFINRSKDAIHKKIISYTGEGPGHQVEVAMQWNSGYSESVYTFAN 178

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G RSALT  +  Y       K    ++ G+D REG  +++S+K+ +P+
Sbjct: 179 TINTHEGGTHEEGFRSALTTTVNRYARDKKLLKDKDPALSGEDIREGLAAIVSVKVAEPQ 238

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++EV+S V+   N+ LS W E +P +AK IV K + ++  R AAR+AR+L
Sbjct: 239 FEGQTKTKLGNTEVKSFVQKMSNEWLSDWFERNPADAKTIVTKAVSSAQARLAARKAREL 298

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI+
Sbjct: 299 VRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKII 358

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           NVE+AR D++L + E+ ++ITALGTGI  D FD++KLR
Sbjct: 359 NVEKARIDRVLKNTEVQSIITALGTGI-HDEFDLSKLR 395


>gi|46367529|emb|CAG25886.1| DNA gyrase subunit B [Yersinia frederiksenii]
 gi|46367531|emb|CAG25887.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 346

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 201/349 (57%), Positives = 263/349 (75%), Gaps = 4/349 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV 
Sbjct: 60  WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+  LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|295099695|emb|CBK88784.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Eubacterium cylindroides T2-87]
          Length = 186

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 87/164 (53%), Positives = 113/164 (68%), Gaps = 2/164 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
            + + SY AD IQ+L+GL+AV+ RP MYIG T    GLHH+++E++DN IDE+L G+A  
Sbjct: 20  TLVDHSYTADDIQVLEGLEAVRMRPGMYIGSTSS-RGLHHLVWEIVDNGIDEALAGFASQ 78

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VT+  D    V DNGRG+P  +H++ GISA E IMT LHAGGKF   +YKVSGGLHGV
Sbjct: 79  IDVTIEKDDIIAVRDNGRGMPVGIHEKTGISAVETIMTVLHAGGKFGGGAYKVSGGLHGV 138

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG 166
           G SVVNALS WL++ + ++G IY + F N G    PL + G   
Sbjct: 139 GASVVNALSEWLEVTVYQDGKIYFIRFENGGNTVAPLKIIGQTK 182


>gi|51571593|emb|CAH18963.1| gyrase B [Corallococcus coralloides]
          Length = 366

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 194/369 (52%), Positives = 262/369 (71%), Gaps = 3/369 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGV+ VN LS W K+RI+R G +YE S+  G+ +      G   +  GT + F
Sbjct: 1   VSGGLHGVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVANGAPQEVG-TTDKRGTMIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P + +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    ++GGI +FV Y
Sbjct: 60  KPDTQVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFEGGISSFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++A
Sbjct: 118 LNKAKEALHDKPVFIKTEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +
Sbjct: 178 LTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGL 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VND L+++LEE+P  AK +  K+ DA   R AAR+AR+  RRKGVLD   LPGKLA
Sbjct: 238 VEQMVNDQLASFLEENPPLAKKVAAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI 
Sbjct: 298 DCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIV 357

Query: 476 TLITALGTG 484
           TLITALGTG
Sbjct: 358 TLITALGTG 366


>gi|117555560|gb|ABK35307.1| DNA gyrase subunit B [Acinetobacter xiamenensis]
          Length = 369

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 215/371 (57%), Positives = 268/371 (72%), Gaps = 3/371 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L+L I R G I++  + +G    PL V G     TGT V F PSS+ 
Sbjct: 1   GVGVSVVNALSSKLELTIHRAGQIHQQEYCHGDSVYPLKVVGPTE-TTGTTVRFWPSSET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y+++ K 
Sbjct: 60  FSQTIFNVDILARRLRELSFLNAGVRIVLRDERVA--LEHIYDYEGGLSEFVKYMNQGKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L         S   I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 118 HLNDIFHFTADSDQGIMVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +N
Sbjct: 178 QYLESENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQAMN 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+D
Sbjct: 238 KAFSEYLLENPTAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SS E+GTLITAL
Sbjct: 298 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSAEVGTLITAL 357

Query: 482 GTGIGQDSFDI 492
           G GIG++ ++ 
Sbjct: 358 GCGIGREEYNP 368


>gi|46367525|emb|CAG25884.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 346

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 202/349 (57%), Positives = 263/349 (75%), Gaps = 4/349 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+   PL + G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-DLTGTTVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI AFV 
Sbjct: 60  WPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL ++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLSKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|6729219|dbj|BAA89731.1| DNA gyrase subunit B [Micromonospora halophytica]
          Length = 393

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 258/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + +      L   G + + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHHSKPTA-LEK-GESTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLTRGLTIHLLDERVPEGEEGKLREVTFRY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 DGGIADFVRHLNASKNPIHKTVVEFGAEEEGMSLEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGA-EKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK+I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|119226158|dbj|BAF41058.1| DNA gyrase subunit B [Corynebacterium glutamicum]
 gi|308152501|dbj|BAJ22229.1| DNA gyrase subunit B [Corynebacterium glutamicum]
          Length = 432

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 184/435 (42%), Positives = 260/435 (59%), Gaps = 46/435 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++  IK  G  +  +F   + D  +   G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T + F P ++IF   +F+++T+  RL+E++FLN  + I+L D R+ +             
Sbjct: 59  TTIRFWPDAEIFETTEFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGE 118

Query: 222 ----------------------------------TMFYKGGIEAFVSYLDRHKKPLMQSP 247
                                                Y  G+E +V YL+R K  +  S 
Sbjct: 119 TATELSLDEIDNETELVEETTDAPKKPKKREKKKIFHYPNGLEDYVHYLNRSKTNIHPSI 178

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +  +   D+  +++AM+WN  Y E+V  F N I  ++GGTH  G RSALT  +  Y  + 
Sbjct: 179 VSFEAKGDDHEVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREH 238

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K+ + ++ GDDCREG ++V+S+++ DP+F  QTK KL ++E++S V+   N+ +  W
Sbjct: 239 KLLKEKEANLTGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHW 298

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LE +P EAK+I+ K + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP+KSEL
Sbjct: 299 LEANPAEAKVIINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSEL 358

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +ITALGTGI  
Sbjct: 359 YIVEGDSAGGSAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-H 417

Query: 488 DSFDINKLRYHKIII 502
           D FDINKLRYHKI++
Sbjct: 418 DEFDINKLRYHKIVL 432


>gi|259018142|gb|ACV89663.1| DNA gyrase subunit B [Nocardia jejuensis]
          Length = 415

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 177/418 (42%), Positives = 254/418 (60%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALSS +++ I  +G  +  ++      + L V G   + TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKEATP-SKL-VKGEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETAE 118

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+E FV +++R K+ +  S +   G      +++
Sbjct: 119 APKHGEPTGEAASEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRY K
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYQK 415


>gi|188529755|gb|ACD62564.1| GyrB [Micromonospora sp. 25]
          Length = 393

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 179/397 (45%), Positives = 254/397 (63%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   +       PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYNQSKP-TPLEK-GEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       +PRE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEEGKPREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +L+  K P+ ++ +        +S ++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 DGGIADFVRHLNASKSPIHKTVVEFGAEETGMSAEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGA-EKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+P KLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPSKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|188529779|gb|ACD62575.1| GyrB [Micromonospora sp. 85]
          Length = 393

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 182/397 (45%), Positives = 261/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + +     PL   G A + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMFVEIHKSGAVWRQHYTHSKP-GPLEK-GEATDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN +++I L+D+R  E      RE+T +Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEVDGRQREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S++ AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFIAEEEGMSLETAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQPTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|71833780|emb|CAI94329.1| gyrase B [Helicobacter cinaedi]
          Length = 366

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 167/371 (45%), Positives = 241/371 (64%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + IK+ G+IY   F  GI  + L + G    + GT + F P 
Sbjct: 1   GLHGVGVSVVNALSKKLIMTIKKNGHIYRQEFAQGIPQSELEIIGETK-EHGTIIEFYPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            ++  V +F+   L  R +E+++LN ++ I   D+R+ +         GG++ F+   D 
Sbjct: 60  GEVMEVLEFDSQILTRRFKEMAYLNHNITIYFKDERTGQEESYHF--DGGLKQFIQ--DV 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           + KPL+ S I  +       +++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 116 NTKPLVSSIISFEALEQETEVEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V GDD REG  +++S K+ DP+F  QTK KL S+ V+ +V+ 
Sbjct: 176 AIMNYIEANANAREKDSKVTGDDVREGLVAIISTKVIDPQFEGQTKGKLGSAFVKPIVQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + L+ + EE+P EA+II++K + A+  R+AA++ARDLTR+K    + +LPGKLADC 
Sbjct: 236 LTYEKLAKFFEENPTEARIIMQKAIMAARGREAAKKARDLTRKKESFSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S EI  +I
Sbjct: 296 SKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSDEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 356 TAFGCGIGDEF 366


>gi|188529743|gb|ACD62558.1| GyrB [Micromonospora sp. 83]
          Length = 393

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 180/397 (45%), Positives = 256/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLEK-GEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP-----REITMFY 225
           + V+F P  ++F   DF++ T+  RL+E++FL   + I L+D+R PE      RE+T  Y
Sbjct: 59  SAVSFWPDPNVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKLREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +L+  K P+ ++ +        +S ++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 DGGIADFVRHLNASKSPIHKTVVEFGAEETGMSAEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGA-EKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|188529766|gb|ACD62569.1| GyrB [Micromonospora sp. 46]
          Length = 393

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 262/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D  L   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQKYHNSKPDA-LEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++A++WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAVQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  ++ Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVSRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL S+ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGSTPVKSFVQRVCNDRLVDWFDWNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|268531746|ref|XP_002631000.1| Hypothetical protein CBG02746 [Caenorhabditis briggsae]
          Length = 1506

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 136/676 (20%), Positives = 246/676 (36%), Gaps = 58/676 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES-----------------------GLHHMIYEV 48
            D  Q    L+ +  RP  YIG  +                          GL+ +  E+
Sbjct: 62  EDIYQKKSQLEHILLRPDTYIGSVEYTEQTPMWVFNTEKNQLEQRDIRYVPGLYKIFDEI 121

Query: 49  LDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D        + I V ++ +  S +V +NG+GIP  LHK E +   E+I   L   
Sbjct: 122 LVNAADNKQRDPKMNTIKVVIDKERNSISVYNNGKGIPVTLHKVEKVYVPELIFGTLLTS 181

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+  KL    K     +  +++  +          
Sbjct: 182 SNYNDDEKKVTGGRNGYGAKLCNIFSTKFKLETSSKEYHKKFSQTWVKNMTKEADPDVEK 241

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREI 221
           +  +  T++TF P    F +++ + D       R  +++     V + L  +R       
Sbjct: 242 STGEDFTKITFSPDLSKFKMKELDDDICHLMARRAYDVAGSTKGVTVFLNGER------- 294

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                 G E +V       +   +    I   +      +A+  ++   + V  F N+I 
Sbjct: 295 --IPVKGFEDYVKMYTNQFQNEGEPLK-IAYEQVGDRWQVALALSEKGFQQV-SFVNSIA 350

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG H+  +   +  +    +++     K   ++     +      ++  + +P F S
Sbjct: 351 TTKGGRHVDYVADQMVAKFIDSIKRK--LTKTAMNIKPFQIKNHMWVFVNALIENPTFDS 408

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTR 400
           QTKE +            +++  S            I   V+     +       +    
Sbjct: 409 QTKETMTLQSKSFGSTCTLSEKFSK-----AAGNVGITDAVMTWVRFKQMDDLNKKCSKT 463

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKI 457
           +   L          D   ++ ++  L L EGDSA   A  G S   R+   + PLRGK+
Sbjct: 464 KTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSIVGRDKYGVFPLRGKL 523

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIR 514
           LNV      ++  + EI  +I  LG    +     +    LRY K+++M D D DG+HI+
Sbjct: 524 LNVRDGNMKQIADNAEINAMIKILGLQYKKKYETDDDFKTLRYGKVMVMADQDQDGSHIK 583

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIE 573
            L++ F     PSLI   F+     P+   T+GK            ++ +N ++      
Sbjct: 584 GLVINFVHHFWPSLIQRNFVEEFITPIVKATKGKEEISFFSIPEYSEWRMNTENWKTYKI 643

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +    G  +  + + +  D   +   I+  Y   D         S     E    +   
Sbjct: 644 KYYKGLGTSTSKEAKEYFSDM--VRHRIRFKYTGADDDNAVDMAFSKKKIDERKHWLTKW 701

Query: 634 LASKLANRLNFIAEKS 649
           +  K A +   +AE+ 
Sbjct: 702 MQEKKARKQQGLAEEY 717


>gi|224055129|ref|XP_002298421.1| predicted protein [Populus trichocarpa]
 gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa]
          Length = 1468

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 140/710 (19%), Positives = 254/710 (35%), Gaps = 89/710 (12%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGD--------------------TDGESGLHHMIYEVLDN 51
            ++ Q    L+ +  RP  YIG                          GL+ +  E+L N
Sbjct: 8   EETYQKKSQLEHILLRPDTYIGSIEKHAQTLWVYEGDKIVHRPVTYVPGLYKIFDEILVN 67

Query: 52  AIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D        D + V ++  +   +V +NG G+P ++HKEEG+   E+I   L     +
Sbjct: 68  AADNKQRDPKMDSLKVVIDGENNLVSVYNNGDGVPVEIHKEEGVYVPELIFGHLLTSSNY 127

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-LDNPLVVTGSA 165
           +    K +GG +G G  + N  S+   +    +G     Y+  F N +   +  ++T   
Sbjct: 128 DDAEKKTTGGRNGYGAKLTNIFSTEFVIETA-DGKRQKKYKQVFSNNMGKKSEPMITKCK 186

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL----SFLNSSVQISLIDKRSPEPREI 221
             +  T+VTF      FS+     D +    + +      L  +V++ L   R P     
Sbjct: 187 EGENWTKVTFKADLAKFSMTHLEEDVVALMKKRVVDIAGCLGKTVKVELNGSRVPVKSFQ 246

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
              Y         YL+   +P  + P R    +     ++ +   +G  + V  F N+I 
Sbjct: 247 DYVYM--------YLNSASEPGSERPKRFFYEKVGERWEVCVSLTEGQFQQV-SFVNSIA 297

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH+  + + +T  + + V K         ++   + +      ++  + +P F S
Sbjct: 298 TIKGGTHVDYVTNQITNYVMNAVNKK----HKNSNIKAHNVKNYLWVFVNCLIDNPAFDS 353

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-IVKKVLDASMVRDAARRARDLTR 400
           QTK      E  ++ +S          +     AK  IV  +L  +  +++    +    
Sbjct: 354 QTK------ETLTLRQSSFGSKCELSEDFLKKVAKSDIVDNLLSWAKFKESKELKKTDGT 407

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG------RSRENQAILPLR 454
           +   +++        +   R  +K  L L EGDSA   A  G        R    + PLR
Sbjct: 408 KTAKVNVP-KLEDANEAGGRYSEKCTLILTEGDSAKALAVTGVAGLTQTERSFYGVFPLR 466

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD--------- 505
           GK+LNV  A   ++  ++EI  +   LG    +   ++  LRY  ++IMTD         
Sbjct: 467 GKLLNVREATPKQLKENKEIECIKKILGLQHHKQYSNVKSLRYGHLMIMTDQAKERFANF 526

Query: 506 ----ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGI-TRGKSLQYVKDEESL 559
                D DG+HI+ LL+ F     PSL+      +    P+     R  ++         
Sbjct: 527 LCFKQDHDGSHIKGLLINFLHSFWPSLLKVPSFLVEFITPIVKATHRNGTVLSFYSMPEY 586

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           E +                KG ++ N     I     +          + ++  +     
Sbjct: 587 ESW----------------KGSLAGNASGWSIKYYKGLGTSTSKEGKAYFQSLDKHKKDF 630

Query: 620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
              + +    I ++ + K          + E   H   N   I       
Sbjct: 631 IWMDEQDGDAIELAFSKKKIEARKNWLRQYEPGTHLDQNQKLIKYSDFIN 680


>gi|4996826|dbj|BAA78458.1| subunit B protein of DNA gyrase [bacterium rA6]
          Length = 301

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 151/305 (49%), Positives = 198/305 (64%), Gaps = 32/305 (10%)

Query: 38  ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEG 92
            +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E  
Sbjct: 1   GTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPK 59

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
            SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALSSWLKL ++REG  +E+ F  
Sbjct: 60  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDFSR 119

Query: 153 GIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLREL 199
           G +             +P+ + G   +  GT+V FLP  +IF     F Y+ L  RLREL
Sbjct: 120 GHVQNRLIEVVDGFEVSPMRIIGQT-DKRGTKVHFLPDQEIFKENFEFRYEILAKRLREL 178

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD---- 255
           SFLN+ V+I L D+R  + RE      GG++ FV +++  KK L  +     GSR     
Sbjct: 179 SFLNNGVRIRLKDER--DGREDDFSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRPAESY 236

Query: 256 ------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                  I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  
Sbjct: 237 GGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNEL 296

Query: 310 SKKDK 314
           +KK K
Sbjct: 297 AKKAK 301


>gi|188529791|gb|ACD62581.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 258/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLGK-GEETDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|51571567|emb|CAH18950.1| gyrase B [Corallococcus coralloides]
          Length = 369

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 190/375 (50%), Positives = 259/375 (69%), Gaps = 6/375 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +YKVSGGLHGVGV+ VN LS W K+R++R G IYE S+  G+ +      G   +  GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKIYEQSYARGVSNGSPQEVG-TTDKRGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    ++GGI +
Sbjct: 60  TIHFKPDSMVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFEGGISS 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV YL++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG
Sbjct: 118 FVEYLNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SE
Sbjct: 178 FKAALTRTLNSYAEKGGVWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+ +VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LP
Sbjct: 238 VKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARIAARKARETVRRKGVLDGGGLP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S
Sbjct: 298 GKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTS 357

Query: 472 QEIGTLITALGTGIG 486
            +        G G G
Sbjct: 358 ADRHA---DHGAGHG 369


>gi|71833792|emb|CAI94335.1| gyrase B [Helicobacter mustelae]
          Length = 366

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 162/371 (43%), Positives = 243/371 (65%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + IK+ G IY   F  GI    L + G    + GT + F P 
Sbjct: 1   GLHGVGVSVVNALSKRLIMTIKKNGYIYRQEFAKGIPQTDLEIIGKTK-EHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            ++  + +F+ + L  R +E+++LN +V +   ++++   +      + G+  FV  +  
Sbjct: 60  GEVMEILEFDAEILIKRFKEMAYLNQNVTLFFKEEKTGREQVFHF--ENGLHQFVEDM-- 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +KKP +   I  + + ++  I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 116 NKKPFISPIISFKANEEDTEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    + G+D REG  +++S K+ +P+F  QTK KL SS V+ +V+ 
Sbjct: 176 AILNYIEANASAREKDAKIQGEDVREGLVAIISAKIMEPQFEGQTKGKLGSSFVKPIVQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + L+ + EE+P EAK I++K L A+  R+AA++AR+LTR+K  L + +LPGKLADC 
Sbjct: 236 LTFEKLAKFFEENPNEAKKIMQKALLAARGREAAKKARELTRKKDSLSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP++SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S EI  +I
Sbjct: 296 SKDPRESEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSDEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G GIG++ 
Sbjct: 356 TAFGCGIGEEF 366


>gi|188529745|gb|ACD62559.1| GyrB [Micromonospora sp. 86]
          Length = 393

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 179/397 (45%), Positives = 259/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPD-PLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N     +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTTNTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P  AK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAVAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITAL TGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALDTGI-HDDFDMEKLRYHKVVL 393


>gi|309365103|emb|CAP23826.2| hypothetical protein CBG_02746 [Caenorhabditis briggsae AF16]
          Length = 1482

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 136/676 (20%), Positives = 246/676 (36%), Gaps = 58/676 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES-----------------------GLHHMIYEV 48
            D  Q    L+ +  RP  YIG  +                          GL+ +  E+
Sbjct: 62  EDIYQKKSQLEHILLRPDTYIGSVEYTEQTPMWVFNTEKNQLEQRDIRYVPGLYKIFDEI 121

Query: 49  LDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D        + I V ++ +  S +V +NG+GIP  LHK E +   E+I   L   
Sbjct: 122 LVNAADNKQRDPKMNTIKVVIDKERNSISVYNNGKGIPVTLHKVEKVYVPELIFGTLLTS 181

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGS 164
             +N    KV+GG +G G  + N  S+  KL    K     +  +++  +          
Sbjct: 182 SNYNDDEKKVTGGRNGYGAKLCNIFSTKFKLETSSKEYHKKFSQTWVKNMTKEADPDVEK 241

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREI 221
           +  +  T++TF P    F +++ + D       R  +++     V + L  +R       
Sbjct: 242 STGEDFTKITFSPDLSKFKMKELDDDICHLMARRAYDVAGSTKGVTVFLNGER------- 294

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                 G E +V       +   +    I   +      +A+  ++   + V  F N+I 
Sbjct: 295 --IPVKGFEDYVKMYTNQFQNEGEPLK-IAYEQVGDRWQVALALSEKGFQQV-SFVNSIA 350

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG H+  +   +  +    +++     K   ++     +      ++  + +P F S
Sbjct: 351 TTKGGRHVDYVADQMVAKFIDSIKRK--LTKTAMNIKPFQIKNHMWVFVNALIENPTFDS 408

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTR 400
           QTKE +            +++  S            I   V+     +       +    
Sbjct: 409 QTKETMTLQSKSFGSTCTLSEKFSK-----AAGNVGITDAVMTWVRFKQMDDLNKKCSKT 463

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKI 457
           +   L          D   ++ ++  L L EGDSA   A  G S   R+   + PLRGK+
Sbjct: 464 KTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSIVGRDKYGVFPLRGKL 523

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIR 514
           LNV      ++  + EI  +I  LG    +     +    LRY K+++M D D DG+HI+
Sbjct: 524 LNVRDGNMKQIADNAEINAMIKILGLQYKKKYETDDDFKTLRYGKVMVMADQDQDGSHIK 583

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIE 573
            L++ F     PSLI   F+     P+   T+GK            ++ +N ++      
Sbjct: 584 GLVINFVHHFWPSLIQRNFVEEFITPIVKATKGKEEISFFSIPEYSEWRMNTENWKTYKI 643

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +    G  +  + + +  D   +   I+  Y   D         S     E    +   
Sbjct: 644 KYYKGLGTSTSKEAKEYFSDM--VRHRIRFKYTGADDDNAVDMAFSKKKIDERKHWLTKW 701

Query: 634 LASKLANRLNFIAEKS 649
           +  K A +   +AE+ 
Sbjct: 702 MQEKKARKQQGLAEEY 717


>gi|6729217|dbj|BAA89730.1| DNA gyrase subunit B [Micromonospora halophytica]
          Length = 393

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 184/397 (46%), Positives = 260/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G+++   +       PL   G A + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGSVWRQQYHQSKP-TPLEK-GEATDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLTRGLTIHLLDERVPEGEEGKLREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKTPMHKTVVEFGAEEEGMSLEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGA-EKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  WL+ +P EAKII+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWLDRNPAEAKIIISKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|312069494|ref|XP_003137708.1| TOPoisomerase family member [Loa loa]
 gi|307767126|gb|EFO26360.1| TOPoisomerase family member [Loa loa]
          Length = 1485

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 138/745 (18%), Positives = 260/745 (34%), Gaps = 74/745 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDT-----------------------DGESGLHHMIYEVLDN 51
            Q    L+ +  RP  YIG                             GL+ +  E+L N
Sbjct: 80  YQKKSQLEHILLRPDTYIGSVEHTDKAPMWVYDAEVERIVQRDISYVPGLYKIFDEILVN 139

Query: 52  AIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D        ++I + +N +    +V +NG+GIP  LHK E +   E+I   L     +
Sbjct: 140 AADNKQRDPKMNLIRININKETNEISVFNNGKGIPVVLHKVEQLYVPELIFGTLLTSSNY 199

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           +    KV+GG +G G  + N  S    +    K  G  ++ ++ N +  +       +  
Sbjct: 200 DDSERKVTGGRNGYGAKLCNIFSKEFTVETSSKEYGKAFKQTWKNNMTKDKDPFVSKSVG 259

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +  T VTF P    F + + + D    +  R  +++     V++ L  K         + 
Sbjct: 260 EDFTHVTFKPDLTKFKMIELDDDIISLISRRAYDIAGSTKGVKVYLNGK---------LL 310

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G + +V    +H       P +I   + N   ++A+  ++   + V  F N+I    
Sbjct: 311 PVQGFKQYVEQYTKHNLDNDGEPYKIAYEQVNERWEVALTVSEKGFQQV-SFVNSIATTK 369

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   +T ++   ++K  G      +V     +      ++  + +P F SQTK
Sbjct: 370 GGRHVDYVVDQITAKLIDTIKKKVGKSG--VNVKPFQIKSHMWIFVNSLVENPTFDSQTK 427

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E +         +  +++     + +  +   ++          +      +  T++   
Sbjct: 428 ETMTLQAKNFGSKCEMSERFINAVMKCGIVEAVLAWVRFK----QQETLDKKCSTKKTSK 483

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILN 459
           L          D   ++     L L EGDSA      G    GR R    + PLRGK+LN
Sbjct: 484 LKGIPKLEDANDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRDR--YGVFPLRGKMLN 541

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL---RYHKIIIMTDADVDGAHIRTL 516
           V      +++ + EI  LI  +G            +   RY KI++M D D DG+HI+ L
Sbjct: 542 VREGSHKQIMENAEINALIKIIGLQYRLKYDKDEDMKTLRYGKIMVMADQDQDGSHIKGL 601

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           ++ F     P LI   F+     P+   T+GK            +               
Sbjct: 602 VINFIHYNWPVLIRRNFVEEFITPIVKATKGKESFSFFSLPEYAE------------WRN 649

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
           +++   +               +  + F          Q       N          +  
Sbjct: 650 NTENWKTYRIKYYKGLGTSTSKEAKEYFTDMVRHRIRFQYSGEEDDNSLDMAFSKKKIED 709

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
           +     N++AEK  +   G       L  +  R V  +  +    +    +  +R   + 
Sbjct: 710 RKVWLTNWMAEKKARREQGLTEEY--LYNKDTRAVSFKDFVNKELVLFSNADNERSIPSL 767

Query: 697 IEENYLTILSLI----CNGDKIKIT 717
           ++        ++       DK ++ 
Sbjct: 768 VDGLKPGQRKVLFTCFKRADKKEVK 792


>gi|88824767|gb|ABD52429.1| gyrase B [Helicobacter pylori]
          Length = 391

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 181/396 (45%), Positives = 252/396 (63%), Gaps = 7/396 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YK SGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKXSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS   +++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKXEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIIAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++ +   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDNN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           L S+EI  +ITA G GI Q+SFDI +LRYHKIIIMT
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIIIMT 391


>gi|46367523|emb|CAG25883.1| DNA gyrase subunit B [Yersinia frederiksenii ATCC 33641]
          Length = 346

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 201/349 (57%), Positives = 263/349 (75%), Gaps = 4/349 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV 
Sbjct: 60  WPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+  LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           ADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 ADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|211927065|dbj|BAG82785.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153074|dbj|BAJ22126.1| DNA gyrase subunit B [Lactobacillus plantarum]
          Length = 395

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 171/397 (43%), Positives = 246/397 (61%), Gaps = 7/397 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDT 169
           Q  YK SGGLHGVG SVVNALSS L + I R+G  Y   F + G     L   G     T
Sbjct: 1   QGGYKTSGGLHGVGASVVNALSSELTVTIVRDGYRYVEHFKDGGHPVGTLEKKGKTNKPT 60

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT +TF P + IF+   +N+ TL  RLRE +FL   V+I+L D+R  + +E+   Y+ GI
Sbjct: 61  GTTMTFKPDASIFTTTVYNFQTLAERLRESAFLLKGVKITLTDERENQQQELVFHYEDGI 120

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFVSYL+   K  +   +   G+++ + +++A ++NDGY EN+L F NN+   DGGTH 
Sbjct: 121 KAFVSYLNED-KDTLGDIMFFDGTKEGVEVEVAAQYNDGYSENLLSFVNNVRTPDGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKL 347
            G RSA T+    Y  K    K   +++ G D REG ++V+S+++P+   +F  QTKEKL
Sbjct: 180 VGFRSAWTKAFNEYARKVGLLKDKDKNLEGSDVREGLSAVISLRVPENLLQFEGQTKEKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVL 405
            + E R++V++ V++ L  +L E+   A+++++K   A   R+AAR+ARD     ++   
Sbjct: 240 GTPEARTIVDNIVSEQLQFFLMENGEFAQMLIRKSTKARQAREAARKARDESRNGKRRHK 299

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               L GKL     ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ 
Sbjct: 300 QERLLSGKLTPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKL 359

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
             ++ ++EI T+I  +G G+G   FDI    Y KIII
Sbjct: 360 ADIVKNEEINTMIYTIGAGVG-PEFDIKASNYDKIII 395


>gi|4996810|dbj|BAA78450.1| subunit B protein of DNA gyrase [bacterium rM12]
          Length = 300

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 148/299 (49%), Positives = 195/299 (65%), Gaps = 32/299 (10%)

Query: 37  GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEE 91
             +GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E 
Sbjct: 1   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EP 59

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151
             SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALSSWLKL ++REG  +E+ F 
Sbjct: 60  KRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDFS 119

Query: 152 NGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRE 198
            G +             +P+ + G   +  GT+V FLP ++IF     F Y+ L  RLRE
Sbjct: 120 RGHVQNRLIEVVDGFEVSPMRIIGQT-DKRGTKVHFLPDTEIFKENHEFRYEILAKRLRE 178

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD--- 255
           LSFLN+ V+I L D+R  + RE      GG++ FV +++  KK L  +     GSR    
Sbjct: 179 LSFLNNGVRIRLKDER--DGREDDFSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRPAES 236

Query: 256 -------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                   I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++
Sbjct: 237 YGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQN 295


>gi|27530791|dbj|BAC54043.1| DNA gyrase subunit B [Gordonia rhizosphera]
          Length = 421

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 184/424 (43%), Positives = 248/424 (58%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ ++L I   G  +E S+ +    +PL   G+A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQSYDHAKP-SPLQQ-GAATRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP------------ 218
           T V F P  DIF    F+ +T+  RL+E++FLN  + I+L D R  E             
Sbjct: 59  TTVRFWPDPDIFETTTFSAETVARRLQEMAFLNKGLTITLTDNRRSEESVAAEAEMGGNG 118

Query: 219 --------------------REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                               R  T  Y  G+  ++ +L+R K  +  S I          
Sbjct: 119 EETAEVIKSEEEKAQRAARVRTRTYHYPDGLVDYIKHLNRTKNSIHTSVIAFNAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + 
Sbjct: 179 VEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L  W E +P EAK I
Sbjct: 239 GDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQKMSNEHLGHWFEANPAEAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           VKK +D++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 VKKAVDSAQARMAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYH
Sbjct: 359 AKSGRDSMYQAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|188529732|gb|ACD62553.1| GyrB [Micromonospora sp. 53]
          Length = 393

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 182/397 (45%), Positives = 262/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N    +PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYNNSKP-SPLDK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN +++I L+D+R  E      RE+T FY
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFFY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +  +   + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFEAEEEGMSLEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGAD-KRLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK+I+ K   A+  R AA++AR L R K +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARHKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|6729190|dbj|BAA89728.1| DNA gyrase subunit B [Micromonospora echinospora]
          Length = 392

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 181/396 (45%), Positives = 261/396 (65%), Gaps = 8/396 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   ++    D PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYLASKPD-PLDK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYK 226
           + V+F P  D+F   DF++ T+  RL+E++FLN  + I L+D+R      + RE+T  YK
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRGLTIHLLDERATDEEGKAREVTFCYK 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI  FV +L+  K P+ ++ +   G  + +S+++AM+WN+ Y E+V  F N I   +GG
Sbjct: 119 GGISDFVRHLNASKNPIHKTVVEFGGEEEGMSVEIAMQWNESYGESVYTFANTINTHEGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK K
Sbjct: 179 THEEGFRAALTTLVNKYGT-EKKLLKADEKLSGEDIREGLAAIISVKLANPQFEGQTKTK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++ V+S V+   N+ L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L+
Sbjct: 238 LGNTPVKSFVQRVCNEWLVDWFDRNPAEAKVIITKASQAARARIAAQQARKLARRKSLLE 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
             S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D
Sbjct: 298 SGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARID 357

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           ++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 RVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 392


>gi|71833778|emb|CAI94328.1| gyrase B [Helicobacter cholecystus]
          Length = 366

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 168/371 (45%), Positives = 249/371 (67%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + IKR+GNIY   F  G+    L + G    + GT + F P 
Sbjct: 1   GLHGVGVSVVNALSRKLIMTIKRDGNIYRQEFQKGVPTTALEIIGKTK-EHGTTIEFYPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            ++  V +F+ + L  R +E+++LN ++ IS  D+++    +     +GG++ FV   D 
Sbjct: 60  GEVMEVLEFDSEILIKRFKEMAYLNRNIIISFTDEKNGRREKYHF--EGGLKQFVE--DI 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +KKPL+   I  + S + +  ++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 116 NKKPLLSEIISFEVSDEELEAEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y++ +  +++    V GDD REG  +++S K+ +P+F  QTK KL SS V+ +++ 
Sbjct: 176 AIINYIDANANTREKDSKVTGDDVREGLVAIISTKVMEPQFEGQTKGKLGSSFVKPIIQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + L+ + EE+P++AK I++K L A+  R+AA++AR+LTR+K  L + +LPGKLADC 
Sbjct: 236 LTYEKLTKFFEENPIQAKAIMQKALLAARGREAAKKARELTRKKETLSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S+EI  +I
Sbjct: 296 SKDPSESEIYLVEGDSAGGSAKQGRDRAYQAILPLRGKILNVEKSRLDKILKSEEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G GIG++ 
Sbjct: 356 TAFGCGIGEEF 366


>gi|20387202|dbj|BAB91301.1| gyrase B [Streptomyces pallidus]
          Length = 409

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 185/411 (45%), Positives = 262/411 (63%), Gaps = 21/411 (5%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALSS + + ++ +G+ +   +  G+   PL     A  +TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSSKVAVEVRTDGHRWTQDYKMGVPTAPLAQ-HEATEETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T VTF    DIF   +++++TL  R +E++FLN  + I L D+R                
Sbjct: 60  TSVTFWADPDIFETTEYSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGADE 119

Query: 215 SPEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHE 271
           + E + +T  Y+GGI  FV Y   R  + +  + I ++       +S+++AM+WN GY E
Sbjct: 120 TAEVKTVTYHYEGGIVDFVKYLNSRKGEAVHPTVIDLEAEDREKQLSLEVAMQWNGGYTE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S
Sbjct: 180 GVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++E ++ V+  V + L+ WL+ +P EA  IV+K + A+  R A
Sbjct: 240 VKLSEPQFEGQTKTKLGNTEAKTFVQKVVYEHLADWLDRNPNEAADIVRKGIAAATARVA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAIL
Sbjct: 300 ARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           P+RGKILNVE+AR D++L +QEI  +I+A GTG+ +D FDI +LRYHKII+
Sbjct: 360 PIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHED-FDIERLRYHKIIL 409


>gi|66474605|gb|AAY46872.1| GyrB [Aeromonas sp. ym4]
          Length = 371

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 216/374 (57%), Positives = 279/374 (74%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGV VSVV ALS  L L I+R+G++YE ++  G    PL + G +    GTEV F P   
Sbjct: 1   HGVRVSVVPALSDKLLLTIRRDGHVYEQTYHLGEPQAPLKLIGDSTGP-GTEVRFWPRPA 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y  L  RLRE+SFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYYILAKRLREVSFLNSGVSIRLRDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGPLDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG G G+D ++ +K
Sbjct: 358 LGCGSGRDEYNPDK 371


>gi|119226138|dbj|BAF41048.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 411

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 174/414 (42%), Positives = 251/414 (60%), Gaps = 33/414 (7%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVG+SVVNALS+ L + IK +G  +  ++ +      L + G A  +TGT V+F   
Sbjct: 1   GLHGVGISVVNALSTRLDVDIKVDGYEWHQTYTDSKP-GEL-IQGPATKETGTTVSFWAD 58

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------------- 216
            +IF    +N++T+  RL+E++FLN  + I+L D+R+                       
Sbjct: 59  PEIFETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDVDEESIDVAEAPKSAAETQ 118

Query: 217 --------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y GG+E +V ++++ K P+  S +          +++AM+WN G
Sbjct: 119 EAAAAAPRKAKTRVYHYPGGLEDYVRHINKSKSPIHNSVVGFTAKGTGHELEVAMQWNSG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y       K+ ++++ GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEQNLNGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++S+K+ +P+F  QTK KL ++EV+S V+   N+ L  WLE +P +AK IV K + ++  
Sbjct: 239 IVSVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLQHWLEANPADAKTIVNKAVSSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   D+  LPGKLADC   DP+KSE+++VEGDSAGGSAK GR    Q
Sbjct: 299 RIAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKILNVE+AR D+ L + EI ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 AILPLRGKILNVEKARLDRALKNTEIQSMITAFGTGI-HDEFDIAKLRYHKIVL 411


>gi|68159573|gb|AAY86368.1| gyrase B [Clostridium asparagiforme DSM 15981]
          Length = 397

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 162/400 (40%), Positives = 238/400 (59%), Gaps = 11/400 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSA 165
            ++YK SGGLHGVG SVVNALSS + +++ R+G IY  ++  G+   PL      V G  
Sbjct: 1   NEAYKTSGGLHGVGSSVVNALSSHMDVKVYRDGCIYHDAYEKGLPVIPLENGLLPVIGKT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             +TGT++ FLP  +IF    F  D L+ RL E ++LN ++ I   +KRS E  +IT   
Sbjct: 61  -RETGTQINFLPDDEIFERTRFKADWLKSRLHETAYLNPNLMIFYANKRSGESEQITYHE 119

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             GI ++V  L   K  +   PI  +G+ D + +++A+++ D + EN+L F NNI  ++G
Sbjct: 120 PEGIVSYVKELYTGKTAVH-DPIYFKGTVDKVEVEVALQFVDTFEENILGFCNNIFTQEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G ++  T  I SY  +    K+   +  G D R G T+V+++K PDP F  QTK 
Sbjct: 179 GTHLAGFKTKFTAMINSYARELGILKEKDANFTGADTRNGMTAVVAVKHPDPIFEGQTKT 238

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL S++    V + V D L  + + +    K ++     ++ +R A  +A+     +   
Sbjct: 239 KLASADATKAVFAVVGDELQRYFDRNLEVLKGVIGCAEKSAKIRRAEEKAKTNMLTRSKF 298

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
              S  GKLA+C  RD +K E+F+VEGDSAGGSAK  R+R  QAILP+RGKILNVE+A  
Sbjct: 299 SFDS-NGKLANCESRDAEKCEIFIVEGDSAGGSAKTARNRMYQAILPIRGKILNVEKASM 357

Query: 466 DKMLSSQEIGTLITALGTGIGQ---DSFDINKLRYHKIII 502
           DK+L++ EI T+I A G G  +   + FDI KLRY+KII+
Sbjct: 358 DKVLANAEIKTMINAFGCGFSEGYGNDFDITKLRYNKIIL 397


>gi|188529793|gb|ACD62582.1| GyrB [Micromonospora sp. 20]
          Length = 393

 Score =  306 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 256/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G A + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYNHSKP-TPLEK-GEATDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLTRGLTIHLLDDRVPEDEEGKTREVTFRY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +L+  K P+ ++ +        +S ++AM+WN+ Y E+V  F NN+   +G
Sbjct: 119 DGGIADFVRHLNASKNPIHKTVVEFGAEETGMSAEIAMQWNESYGESVYTFANNVNTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGA-EKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|157953085|ref|YP_001497977.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123312|gb|ABT15180.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 1061

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 171/848 (20%), Positives = 290/848 (34%), Gaps = 145/848 (17%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT--------------------DGESGLHHMIYEVLDN 51
           A+  Q L   D V  RP  YIG T                       S L  +  E++ N
Sbjct: 2   ANRYQKLSQRDHVLARPDTYIGSTAPQTKNEWVYVNGKVIKKDVTYSSALLKIFDEIITN 61

Query: 52  AIDESLEGYA-------DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           + D               I+ + ++   S +V ++G  IP + H  E     E+I   L 
Sbjct: 62  SAD------CYNRDKRLTILKICIDET-SVSVFNDGCSIPIEKHDVEKCYIPELIFGHLL 114

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AG  F+    +   G +G+G    N  S    + I      Y+ ++ + +         +
Sbjct: 115 AGENFDDTEQRTGAGRNGIGSKATNIFSKIFDVEICDGNKKYKQTWRDNMSVVSKPKVTT 174

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKR-SPEPRE 220
              +     TF P  + F V  F+ D    ++ R+ +++ +   V++ L  KR   +  E
Sbjct: 175 CSKNPYITTTFFPDFERFGVDTFDDDILSVMRRRVYDMAAVLGKVKVMLNGKRLEIKNTE 234

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                  G ++                            D+ +   + +    + F N++
Sbjct: 235 DYFSLYIGSKSETKRAF---------------EHTPEEWDVGVACVEDFTP--VSFVNSV 277

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
               GGTH++ +   + + +     K       K  V     +      ++  + +P F 
Sbjct: 278 -VTRGGTHVNAVSDVVVKAVIEAAAK------KKIIVKPSTVKNRMFVFVNATIVNPTFD 330

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTKE L S   R  +           L +  ++   +   ++D   ++      +    
Sbjct: 331 SQTKEILTSRNARVTLSEAFLKKAVGVLLDVVIQETNVRTSLVDQKELKKTDGTKKIRVT 390

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRG 455
               L+ A+  G        + K   L L EGDSA      G +  GR R    + PLRG
Sbjct: 391 GIPKLNDATWAG------TNNSKMCTLILTEGDSAATLAIAGLSVVGRER--YGVFPLRG 442

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNV  A    +  ++EI  L   LG   G+   D + LRY  ++IMTDADVDG HI  
Sbjct: 443 KLLNVRDASVASITKNEEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHISG 502

Query: 516 LLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           L++ FF    P+L+   GFL     P+    +GK ++        ED++  Q + +    
Sbjct: 503 LVMNFFHSCFPNLLEIPGFLKKFITPIVVARKGKEVREFFSLPDFEDFVKTQDMKKWTTK 562

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  S  D       A K    +K        T     +I   FN    ++     
Sbjct: 563 YFKGLGTSSSAD-------AKKYFSNLKSLMKTFMWTSDSGELIDRSFNKSRAEDR-KEW 614

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG------SSIFSFGSK 688
            +          +K E      I+   IL  R         V++G        I+S   +
Sbjct: 615 MTAYEPGNQLDHKKPEVPVPDFIDKELILFSRYDLERSIPSVVDGFKPSQRKVIYSAFKR 674

Query: 689 YK--RIFSNRIEENYLTILSLICNGDKIK--ITGPCSL------LDTIFSIGRKGISMQ- 737
                +   +         +       ++  I            ++ +   G+ G  +Q 
Sbjct: 675 NLTTDVKVAQFSGYVAEHSAYHHGEASLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQG 734

Query: 738 -------RY---KGLGEMNASQLWETTLNPDTR--------SLLRVKITDASQADDLFSR 779
                  RY   K              LNP TR        +LL+    D          
Sbjct: 735 GKDHASARYIYMK--------------LNPQTRQVFVDTDDNLLKYMYDD---------- 770

Query: 780 LMGDEVEP 787
             GD++EP
Sbjct: 771 --GDKIEP 776


>gi|27530799|dbj|BAC54047.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 424

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 183/427 (42%), Positives = 255/427 (59%), Gaps = 38/427 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I  +G  +  +F +   D   +V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGFHWSETFTDSKPDG--LVKGEPTRKTG 58

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T V F P + IF+    FN +T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  TTVRFWPDASIFTETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNGEGE 118

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                +P+  T  Y  G+  ++ +L+R K P+ +S I   G   
Sbjct: 119 EGTTETAEEIKSDEEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGT 178

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY E+V  F N I   +GGTH  G R+ALTR + SY  +    K+   
Sbjct: 179 GHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKEKDD 238

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V     + +  W E +P EA
Sbjct: 239 NLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANPAEA 298

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KII+ K ++++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E++LVEGDSA
Sbjct: 299 KIIINKAVESAHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEGDSA 358

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KL
Sbjct: 359 GGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDLAKL 417

Query: 496 RYHKIII 502
           RYHKI++
Sbjct: 418 RYHKIVL 424


>gi|115392233|gb|ABI96917.1| topoisomerase [Trypanosoma congolense]
          Length = 1439

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 134/694 (19%), Positives = 234/694 (33%), Gaps = 60/694 (8%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           M+       Y     Q     + +  RP MYIG  +  +                     
Sbjct: 1   MAQRTVEEIY-----QKKTQHEHILARPDMYIGTIEPVTEDMWVYDEADCVMKLQRCTWT 55

Query: 40  -GLHHMIYEVLDNAIDESLEG-YA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISA 95
            GL+ +  E+L NA D  +   +    I V ++ + G   V +NG GIP   H+E  +  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPHGQTAIKVWIDTERGVIRVYNNGEGIPVQRHREHDLWV 115

Query: 96  AEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFING 153
            E+I   L     ++    KV+GG +G G  + N  S+  +L     R    + M + N 
Sbjct: 116 PEMIFGHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTCFELETVHSRSRKKFFMRWRNN 175

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +L++   V  S      T VTF P    F +Q  + D      R +           I  
Sbjct: 176 MLESEEPVITSCDGPDYTMVTFYPDFAKFKLQGLSEDMALIMKRRVYD---------IAG 226

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
            + +     +  +       +        + +       SR N   ++ +R ++   + V
Sbjct: 227 CTEKSLSCYLNGEKIPCRSFAEYVDLYPTMGEERRPGSYSRVNDRWEVCVRVSNIGFQQV 286

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GGTH+  +   +  ++T         +K K  V     R      ++  
Sbjct: 287 -SFVNSIATTRGGTHVKYVVEQIIAKVTEQA-----MRKSKTEVKPHMIRPHMFVFVNCL 340

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDA 391
           + +P F SQTKE L + + R      +   L   + +  +  + +       S       
Sbjct: 341 IENPSFDSQTKETLNTPKTRFGSVCDLPASLIDCVLKSSIVERAVEMANSKLSREMAMKL 400

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQ 448
               R        LD A+  G              L L EGDSA      G    +R+  
Sbjct: 401 RNSNRKQVLGIPKLDDANEAGGKNSYR------CTLILTEGDSAKALCTAGLAVENRDYF 454

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
            + PLRGK LNV  A   K++S  E   +   +G  + Q    +  LRY  ++IM+D D 
Sbjct: 455 GVFPLRGKPLNVRDASIKKVMSCAEFQAVSKIMGLDVTQKYTSVEGLRYGHLMIMSDQDH 514

Query: 509 DGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           DG+HI+ L++       P L+   GFL     P+    +       +   S         
Sbjct: 515 DGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKSRGNGDEGAISFFSMPDYFE 574

Query: 568 LSEEIELFCDSKGVISKNDLRNF-IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
               +     +  +     L      +  +  + I     N      +      +   + 
Sbjct: 575 WKNAVGDNIKNYELRYYKGLGTSGAKEGREYFENIDRHRLNFVYEDKKDDDDIIMAFAKD 634

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
             +      +      N     +    + + +  
Sbjct: 635 KVDERKRWITDFKANTNINESMNYNVRNVTYSEF 668


>gi|308153126|dbj|BAJ22152.1| DNA gyrase subunit B [Micromonospora sp.]
          Length = 389

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 180/393 (45%), Positives = 255/393 (64%), Gaps = 9/393 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N    +PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYANSKP-SPLEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V F P +D+F   DF++ T+  RL+E++FLN  + I L+D+R       + RE+T  Y
Sbjct: 59  SAVAFWPDADVFETVDFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEGEEGKTREVTFCY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           KGGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 KGGIADFVRHLNASKTPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   N+ L  W + +P EAKII+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           D++L + E+  LITALGTGI  D FD+ KLRYH
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYH 389


>gi|148971409|gb|ABR20242.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 160/423 (37%), Positives = 241/423 (56%), Gaps = 7/423 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  +YKV+GGLHGVGVSVVNALS  L L I ++G  +   +  G+ +
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVAGGLHGVGVSVVNALSDTLILEIDQKGQHFHQVYHKGVPE 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL VTG     TGT + F P   I     F+YD L HR RELS+LN ++ I+L ++ + 
Sbjct: 61  APLAVTG-TSERTGTAIRFTPDLTIMETDQFSYDVLAHRFRELSYLNPALTITLAEEET- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLC 275
             RE     +GGI +F+++++ +K+ +  S    +   +    ++++++ D    E +L 
Sbjct: 119 -LREAVFHDEGGIRSFLAFVNENKRIIHDSLYFRKTFENGSLFEVSLQYQDTTDAETLLS 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           + NNIP ++GG+H+ G RSALTR +  Y+ +   +K ++  V G+D REG +S++SIK+P
Sbjct: 178 YVNNIPTREGGSHVRGFRSALTRVVNRYIREKNLNKGEE--VKGEDIREGLSSIISIKIP 235

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL SS V    E+F+++ L    E+    A+ I  K +  +  R+AAR+ 
Sbjct: 236 NPQFEGQTKAKLGSSWVSGATETFLSEALEDAFEKQGTVARAIADKAILTAQAREAARKG 295

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
               + K          K      + P +       G       +             +G
Sbjct: 296 PGADQEKERPRRVESSRKARRLPGKRPGQGRTLHRGGGFGRRVGQTRARSPFSGDSSSQG 355

Query: 456 KILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
            ILNVE+ +  +K ++  E+  LITA+G G G++ F +  L YHKIIIMTDADVDG+HIR
Sbjct: 356 YILNVEKTKGVEKFITHDEVRALITAVGCGPGEEEFSLKNLCYHKIIIMTDADVDGSHIR 415

Query: 515 TLL 517
           TLL
Sbjct: 416 TLL 418


>gi|157280826|gb|ABV29334.1| gyrase subunit B [Streptomyces sp. AB5A]
          Length = 390

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 175/388 (45%), Positives = 245/388 (63%), Gaps = 10/388 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + ++R+G  +   +  G    PL     A ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVQRDGFRWTQDYKLGAPTAPLQK-NEATDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------TMF 224
           T VTF    DIF   +++++TL  R +E++FLN  + ISL D+R     E          
Sbjct: 60  TSVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLSISLTDERPDHVDEEGKPLSVRYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV+Y   R  + +  + I          +S+++AM+WN  Y E V  F N I 
Sbjct: 120 YEGGISDFVTYLNSRKGELVHPTVIXFDAEDKERMLSLEIAMQWNTQYSEGVYSFANTIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y       ++   ++ GDD REG T+++SIK+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLTGDDIREGLTAIISIKLGEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E  + V+  V++ L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEAETFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDS 489
           +AR DK+L +QEI  LI+A GTG+ +D 
Sbjct: 360 KARIDKILQNQEIQALISAFGTGVHEDF 387


>gi|188529758|gb|ACD62565.1| GyrB [Micromonospora sp. 44]
          Length = 393

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 179/397 (45%), Positives = 261/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D+     G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDSLDK--GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRY+K+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYNKVVL 393


>gi|300245032|gb|ADJ94109.1| DNA gyrase subunit B [Gordonia desulfuricans]
          Length = 421

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 184/424 (43%), Positives = 250/424 (58%), Gaps = 40/424 (9%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I R+G  +  +F +      L V G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIARDGYNWAETFTDSKP-GEL-VQGDATRKTG 58

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T V F P   IF+    FN +T+  RL+E++FLN  + I+L D R               
Sbjct: 59  TTVRFWPDPSIFTETTAFNAETVARRLQEMAFLNKGLTITLTDNRPKAVEVPGDPNGDAE 118

Query: 217 -----------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
                                  +P+  T  Y  G+  ++ +++R K  + +S I   G 
Sbjct: 119 TGEGGPDTAEAVKSEEEKKVAASKPKTRTYHYPDGLVDYIKHINRTKTAIHKSVIGFTGK 178

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                +++AM+WNDGY E+V  F N I   +GGTH  G R+ALTR + SY       K+ 
Sbjct: 179 GTGHEVEIAMQWNDGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYARDKKLLKEK 238

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
             ++ GDD REG  +V+S+K+ +P+F  QTK KL ++EV+S V+    + L  W E +P 
Sbjct: 239 DSNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKASGEHLEHWFEANPA 298

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EAK+IV K +D++  R AAR+ARDL RRK   DI  LPGKLADC   DP K E++LVEGD
Sbjct: 299 EAKVIVNKAVDSAHARLAARKARDLVRRKSATDIGGLPGKLADCRSNDPSKCEVYLVEGD 358

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+
Sbjct: 359 SAGGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIS 417

Query: 494 KLRY 497
           KLRY
Sbjct: 418 KLRY 421


>gi|327200351|gb|AEA36055.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 358

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 245/358 (68%), Positives = 299/358 (83%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           L S D F++ D+++ TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV Y
Sbjct: 61  LASPDTFTMTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIKQEELLYDGGLEAFVRY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR KKPL+  P+ I G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+A
Sbjct: 121 LDRAKKPLVDKPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTRQ+TSY E S   K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSSEVR V
Sbjct: 181 LTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV 240

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES VN+ LS WLEEHP +AKI+V KV++A++ R+AAR+AR+LTRR G LDIASLPGKLA
Sbjct: 241 VESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRXGALDIASLPGKLA 300

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLS+QE
Sbjct: 301 DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSTQE 358


>gi|188529775|gb|ACD62573.1| GyrB [Micromonospora sp. 78]
          Length = 393

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 256/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLEK-GEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP-----REITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R PE      RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKLREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +L+  K P+ ++ +        +S ++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 DGGIADFVRHLNASKSPIHKTVVEYGAEETGMSAEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGA-EKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|259018146|gb|ACV89665.1| DNA gyrase subunit B [Nocardia inohanensis]
          Length = 414

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 173/417 (41%), Positives = 246/417 (58%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L+  +   G  +   + +      L   G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEVDTAGFHWTQEYKDAKP-GKL-FQGEATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTIRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDQRVSEGDITDEVVSDTAE 118

Query: 223 --------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                                 Y GG+E +V +++R K  +  S +   G      +++A
Sbjct: 119 APKHLDENAPVAEPKVKTRTYHYPGGLEDYVKHINRTKTAIHNSIVGFTGKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+ + ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ DP+F  QTK KL +++V+  V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVADPQFEGQTKTKLGNTDVKGFVQRTCNEHLTHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 RDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHK 414


>gi|294963302|gb|ADF50138.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 174/363 (47%), Positives = 251/363 (69%), Gaps = 2/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P ++IF+    
Sbjct: 1   VNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDTEIFTETIE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + 
Sbjct: 60  FDYDTLANRVRELAFLTKGVNIVIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEE 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ I+G +D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K
Sbjct: 120 PVYIEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARK 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  
Sbjct: 180 NGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEK 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE
Sbjct: 240 FLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG
Sbjct: 300 LYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIG 359

Query: 487 QDS 489
           +D 
Sbjct: 360 EDF 362


>gi|56463177|gb|AAV91730.1| gyrase B [Escherichia coli]
          Length = 234

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 129/237 (54%), Positives = 165/237 (69%), Gaps = 4/237 (1%)

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           L G+   I VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKV
Sbjct: 1   LAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKV 60

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V F 
Sbjct: 61  SGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFW 119

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV Y
Sbjct: 120 PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEY 177

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           L+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 178 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 234


>gi|148616480|gb|ABQ96983.1| GyrB [Nocardiopsis umidischolae]
          Length = 388

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 175/390 (44%), Positives = 251/390 (64%), Gaps = 6/390 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SY VSGGLHGVGVSVVNALS+ L + I+  G+++   +        L V G   ++TGT+
Sbjct: 1   SYAVSGGLHGVGVSVVNALSTALDVEIRVHGHVWRQHYEMTAPTGEL-VKGETTDETGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGG 228
           +TF P   IF    F ++TL  R++E++FLN  + I++ D+R       P   T  Y+ G
Sbjct: 60  ITFWPDGSIFETTTFTFETLARRMQEMAFLNKGLSITIRDERPEHTDGGPTVNTFHYEDG 119

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +  +V +++  K+P   S I  +   D I++++AM+WN  Y  +V  F N I   +GGTH
Sbjct: 120 LSDYVRHINAKKEPAHASIISFEEEGDGIAVEVAMQWNQSYTSSVHTFANTINTAEGGTH 179

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G RSALT  +  Y       ++   ++ GDD REG T+++S+K+ DP+F  QTK KL 
Sbjct: 180 EEGFRSALTTLVNRYARDQKLLREKDDNLTGDDIREGLTAIISVKLADPQFEGQTKTKLG 239

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           ++E +S V+   N+ L  W E +P EAK +V K   A+  R AAR+ARDLTRRK +L+  
Sbjct: 240 NTEAKSFVQKVTNEHLRDWFERNPGEAKDVVSKASQAARARVAARQARDLTRRKTLLETT 299

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           SLPGKL+DC   +P++ E+++VEGDSAGGSAK GR+  NQAILP+RGKILNVE++R D++
Sbjct: 300 SLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEKSRIDRI 359

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           L + E+  +ITALGTGI ++ FD  KLRYH
Sbjct: 360 LKNNEVQAIITALGTGIHEE-FDAEKLRYH 388


>gi|188529789|gb|ACD62580.1| GyrB [Micromonospora sp. 15]
          Length = 393

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 183/397 (46%), Positives = 262/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ +   I + G ++   + N    +PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAAEIHKSGFVWRQQYNNSKP-SPLDK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN +++I L+D+R  E      RE+T FY
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFFY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +  +   + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFEAEEEGMSLEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|188529768|gb|ACD62570.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 179/397 (45%), Positives = 256/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLEK-GEETDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++ L   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFHTIYRRLQEMALLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            ++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 GRVLKNSEVQALITALGTGI-HDDFDIGKLRYHKIVL 393


>gi|269860440|ref|XP_002649941.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
 gi|220066628|gb|EED44103.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
          Length = 1159

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 141/695 (20%), Positives = 244/695 (35%), Gaps = 60/695 (8%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLDNA 52
            Q     + +  RP  YIG  + ++                      GL+ +  E+L NA
Sbjct: 9   YQKKTPKEHILLRPDTYIGSVEIDTQSAFVWDNMQEKIVLKNVKFAPGLYKIFDEILVNA 68

Query: 53  IDESLEG-YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
            D          I V +N + S ++ ++G GIP ++H++E +   E+I   L     +N 
Sbjct: 69  ADNKQRDPRMTYIKVYIN-EMSVSIENDGNGIPIEIHQKEQVYVPELIFGHLLTSSNYND 127

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
              KV+GG +G G  + N  S   ++    +G  Y   F N +         +      T
Sbjct: 128 NEKKVTGGRNGYGAKLCNIFSVHFEVETVSKGRKYSQVFKNNMEIIGKPTISAYSGKDYT 187

Query: 172 EVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           ++TF+P    F +  F+ D       R+ ++     + +I L DK+              
Sbjct: 188 KITFVPDFKRFGMSLFDSDIISIFYKRVYDMCATVKNTEIYLNDKKLMINNLKEYAQLYL 247

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                                    + N   ++A    D     V  F N+I    GGTH
Sbjct: 248 SHDVKLV----------------TKKINDRWEIACASTDEQFMQV-SFVNSICTSKGGTH 290

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++ +   L   + S V+K   +   K      + +      ++  + +P F SQTKE L 
Sbjct: 291 VNHVLDQLMDPLISAVKKRDKTLVLK----PLNVKNNLFLFINALIENPIFDSQTKENLT 346

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
                   +    D +   + ++      I+      S ++ A    +    +   +   
Sbjct: 347 LKSSAFGSKCQPIDDIIKDIIKNTDIIDKIITF----SKIKQAVLLKKTDGVKTTKIVGI 402

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARF 465
                      +   +  L L EGDSA   A  G S   R+   + PLRGK+LNV  A  
Sbjct: 403 PKLEDANFAGTKRSSECTLILTEGDSAKTLAVAGLSVVGRDKYGVFPLRGKLLNVREASN 462

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            +++ + EI  +   LG   G+   D   LRY  I+IMTD D DG+HI+ L++ F     
Sbjct: 463 KQIMDNAEISAIKKILGLQHGKTYTDTTSLRYGHIMIMTDQDFDGSHIKGLIINFLDYFF 522

Query: 526 PSLIHN-GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           PSL+   GFL     P+   T+ K           E +       ++          +  
Sbjct: 523 PSLLKILGFLQEFITPIVRATKKKEKYDFFTIPEYEKFKQQIEQIKDSGWVIKYYKGLG- 581

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
               +  DDA +    +K          +E   +  +   +   +       +       
Sbjct: 582 ---TSTTDDAKQYFNNLKLHVKTFIPVELEDRELIDLAFNKKKADDRKEWIGRFEPGTFL 638

Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
               S  +    +N   IL            V++G
Sbjct: 639 DQSMSNITVRDFVNKELILFSMADNIRSIPSVIDG 673


>gi|148616476|gb|ABQ96981.1| GyrB [Nocardiopsis trehalosi]
          Length = 387

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 172/389 (44%), Positives = 246/389 (63%), Gaps = 6/389 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           KSY VSGGLHGVG+SVVNALS+ L + ++ +G+++  S+        L   G    +TGT
Sbjct: 1   KSYAVSGGLHGVGLSVVNALSTALDVEVRTDGHVWRQSYELTRPTADLAK-GEPTGETGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKG 227
            +TF     IF    ++++TL  R++E++FLN  + I++ D+R       P   T  Y  
Sbjct: 60  IITFWADPTIFETTTYSFETLARRMQEMAFLNKGLSITIRDERPQFVDDSPVVHTYHYDE 119

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+  FV YL++ K P   + +  +   D I+ ++A++WN  Y  +V  F N I   DGGT
Sbjct: 120 GLSDFVRYLNKSKDPAHATIVSFEEEGDGIAAEMALQWNHSYTSSVHTFANTINTTDGGT 179

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  +  Y  +    ++   ++ GDD REG T+++S+K+ DP+F  QTK KL
Sbjct: 180 HEEGFRAALTSIVNRYAREQKLLREKDDNLTGDDIREGLTAIISVKLSDPQFEGQTKTKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E +S V+   N+ L  W E +P EAK IV K   A+  R AAR+ARDLTRRK +L+ 
Sbjct: 240 GNTEAKSFVQRVTNEHLRDWFERNPGEAKDIVTKASQAARARIAARQARDLTRRKTLLES 299

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            SLPGKLADC   +P++ E+++VEGDSAGGSAK GR    QAILP+RGKILNVE++R D+
Sbjct: 300 TSLPGKLADCQSTEPERCEVYIVEGDSAGGSAKGGRDPHYQAILPIRGKILNVEKSRIDR 359

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLR 496
           +L + E+  +ITALGTGI  D FD+ KLR
Sbjct: 360 ILRNNEVQAIITALGTGI-HDEFDLAKLR 387


>gi|321401428|gb|ADW83176.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 357

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 163/357 (45%), Positives = 227/357 (63%), Gaps = 7/357 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
            +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQG  R  QAILPLRG
Sbjct: 301 VQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGPDRAFQAILPLRG 357


>gi|71833823|emb|CAI94343.1| gyrase B [Helicobacter cinaedi]
          Length = 366

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 166/371 (44%), Positives = 240/371 (64%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + IK+ G+IY   F  GI  + L + G    + GT + F P 
Sbjct: 1   GLHGVGVSVVNALSKKLIMTIKKNGHIYRQEFAQGIPQSELEIIGETK-EHGTIIEFYPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            ++  V +F+   L  R +E+++LN ++ I   D+R+ +         GG++ F+   D 
Sbjct: 60  DEVMEVLEFDSQILTRRFKEMAYLNHNITIYFKDERTGQEESYHF--DGGLKQFIQ--DV 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           + KPL+   I  +       +++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 116 NTKPLVSLIISFEALEQETEVEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V GDD REG  +++S K+ DP+F  QTK KL S+ V+ +V+ 
Sbjct: 176 AIMNYIEANANAREKDSKVTGDDVREGLVAIISTKVIDPQFEGQTKGKLGSAFVKPIVQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + L+ + EE+P EA+II++K + A+  R+AA++ARDLTR+K    + +LPGKLADC 
Sbjct: 236 LTYEKLAKFFEENPTEARIIMQKAIMAARGREAAKKARDLTRKKESFSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SE++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S EI  +I
Sbjct: 296 SKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSDEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 356 TAFGCGIGDEF 366


>gi|118201812|gb|ABK79719.1| DNA gyrase subunit b [Silicibacter lacuscaerulensis ITI-1157]
          Length = 357

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 217/357 (60%), Positives = 272/357 (76%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+D FS  +++
Sbjct: 1   NALSDWLELRIWRNGKEHFARFERGETVEHLKVVGECGDRTGTEVRFLASTDTFSNLEYS 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L+D+R  E  E  +FY+GG++ FV YLDR K P M  PI
Sbjct: 61  FETLEKRLRELAFLNSGVRIILVDERPAERLETELFYEGGVKEFVKYLDRSKTPAMPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R+ALTR I +Y + S 
Sbjct: 121 YIKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRAALTRTINNYAQSSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ L+ W 
Sbjct: 181 IAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGMVNEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+ELF
Sbjct: 241 EENPNEAKTIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTELF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+MLSSQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLSSQEIGNLVMALGTGI 357


>gi|254055409|gb|ACT64304.1| GryB [Burkholderia cepacia]
          Length = 374

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 203/377 (53%), Positives = 270/377 (71%), Gaps = 15/377 (3%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169
           GVGVS VNALSSWL+L ++R+G    M F  G+              +P++VTG    + 
Sbjct: 1   GVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTE-NR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG+
Sbjct: 60  GTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL
Sbjct: 118 KGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVS
Sbjct: 178 TGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR+ VE  V   L  +L E P++AKII  K+++A+  RDAAR+AR++TRRKGVLD   
Sbjct: 238 SEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+L
Sbjct: 298 LPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLL 357

Query: 470 SSQEIGTLITALGTGIG 486
           SS++I TL+TALG GIG
Sbjct: 358 SSEQIVTLVTALGCGIG 374


>gi|22761999|dbj|BAC11786.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 252/394 (63%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++ +   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 ETGFKMGLSKAILQYIDNN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SF+I KLRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFEIEKLRYHKIII 389


>gi|119226178|dbj|BAF41068.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 417

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 174/420 (41%), Positives = 253/420 (60%), Gaps = 31/420 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  I   G  +   + +      L V G     TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQADIDYGGYHWTQEYKDAKP-GKL-VQGDPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWADPNIFETTYYNFETVSRRLQEMAFLNKGLTITLTDQRVSDSEITEEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+ +  + +          +++A
Sbjct: 119 APKHEGEAATVTEQKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVGFTSKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNENLAHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP+ SE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R    QAILP+RGKI+NVE++R DK+L + E+ ++ITA GTGI  D FDI+KLRYHKII+
Sbjct: 359 RDSMYQAILPIRGKIINVEKSRIDKVLKNIEVQSIITAFGTGI-HDEFDISKLRYHKIIL 417


>gi|157953897|ref|YP_001498788.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068545|gb|ABU44252.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 1062

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 171/848 (20%), Positives = 290/848 (34%), Gaps = 145/848 (17%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT--------------------DGESGLHHMIYEVLDN 51
           A+  Q L   D V  RP  YIG T                       S L  +  E++ N
Sbjct: 2   ANRYQKLSQRDHVLARPDTYIGSTAPQTKNEWVYVDGKVIKKDVTYSSALLKIFDEIITN 61

Query: 52  AIDESLEGYA-------DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           + D               I+ + ++   S +V ++G  IP + H  E     E+I   L 
Sbjct: 62  SAD------CYNRDKRLTILKICIDET-SVSVFNDGCLIPIEKHDVEKCYIPELIFGHLL 114

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AG  F+    +   G +G+G    N  S    + I      Y+ ++ + +         +
Sbjct: 115 AGENFDDTEQRTGAGRNGIGSKATNIFSKIFDVEICDGNKKYKQTWRDNMSVVSKPKVTT 174

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKR-SPEPRE 220
              +     TF P  + F V  F+ D    ++ R+ +++ +   V++ L  KR   +  E
Sbjct: 175 CSKNPYITTTFFPDFERFGVDTFDDDILSVMRRRVYDMAAVLGKVKVMLNGKRLEIKNTE 234

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                  G ++                            D+ +   + +    + F N++
Sbjct: 235 DYFSLYIGSKSETKRAF---------------EHTPEEWDVGVACVEDFTP--VSFVNSV 277

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
               GGTH++ +   + + +     K       K  V     +      ++  + +P F 
Sbjct: 278 -VTRGGTHVNAVSDVVVKAVIEAAAK------KKIIVKPSTVKNRMFVFVNATIVNPTFD 330

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTKE L S   R  +           L +  ++   +   ++D   ++      +    
Sbjct: 331 SQTKEILTSRNARVTLSEAFLKKAVGVLLDVVIQETNVRTSLVDQKELKKTDGTKKIRVT 390

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRG 455
               L+ A+  G        + K   L L EGDSA      G +  GR R    + PLRG
Sbjct: 391 GIPKLNDATWAG------TNNSKMCTLILTEGDSAATLAIAGLSVVGRER--YGVFPLRG 442

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNV  A    +  ++EI  L   LG   G+   D + LRY  ++IMTDADVDG HI  
Sbjct: 443 KLLNVRDASVASITKNEEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHISG 502

Query: 516 LLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           L++ FF    P+L+   GFL     P+    +GK ++        ED++  Q + +    
Sbjct: 503 LVMNFFHSCFPNLLEIPGFLKKFITPIVVARKGKEVREFFSLPDFEDFVKTQDMKKWTTK 562

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  S  D       A K    +K        T     +I   FN    ++     
Sbjct: 563 YFKGLGTSSSAD-------AKKYFSNLKSLMKTFMWTSDSGELIDRSFNKSRAEDR-KEW 614

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG------SSIFSFGSK 688
            +          +K E      I+   IL  R         V++G        I+S   +
Sbjct: 615 MTAYEPGNQLDHKKPEVPVPDFIDKELILFSRYDLERSIPSVVDGFKPSQRKVIYSAFKR 674

Query: 689 YK--RIFSNRIEENYLTILSLICNGDKIK--ITGPCSL------LDTIFSIGRKGISMQ- 737
                +   +         +       ++  I            ++ +   G+ G  +Q 
Sbjct: 675 NLTTDVKVAQFSGYVAEHSAYHHGEASLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQG 734

Query: 738 -------RY---KGLGEMNASQLWETTLNPDTR--------SLLRVKITDASQADDLFSR 779
                  RY   K              LNP TR        +LL+    D          
Sbjct: 735 GKDHASARYIFTK--------------LNPQTRQVFVDTDDNLLKYLYDD---------- 770

Query: 780 LMGDEVEP 787
             GD++EP
Sbjct: 771 --GDKIEP 776


>gi|197295764|gb|ACH58592.1| gyrase subunit B [Methylobacterium variabile]
          Length = 360

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 238/360 (66%), Positives = 290/360 (80%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+WL+LRI R G  + M F +G   +PL V G AG+  GTEVTFLPS+D 
Sbjct: 1   GVGVSVVNALSTWLRLRIWRAGQEHAMEFRHGDAVSPLAVVGPAGDRRGTEVTFLPSTDT 60

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+EAFV YLDR K 
Sbjct: 61  FTMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELVYEGGVEAFVRYLDRTKT 120

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           PL+  P+ ++  RD I +++A+ WND YHE VL FTNNIPQ+DGGTH++G R+ALTRQ+T
Sbjct: 121 PLVDKPVVVRAERDGIGVEVALWWNDSYHETVLPFTNNIPQRDGGTHMAGFRAALTRQVT 180

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y E S  +K++K S+ GDDCREG T+++S+K+PDP+FSSQTK+KLVSSEVR VVE+ +N
Sbjct: 181 GYAESSGIAKREKVSLTGDDCREGLTAIISVKVPDPKFSSQTKDKLVSSEVRPVVENVLN 240

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +GLS WLEEHP EAK IV KV +A+  R+AAR+AR+LTRRKG LDIASLPGKLADC ERD
Sbjct: 241 EGLSNWLEEHPAEAKTIVGKVAEAAAAREAARKARELTRRKGALDIASLPGKLADCQERD 300

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVERARFDKMLSSQEIGTLITAL
Sbjct: 301 PSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKMLSSQEIGTLITAL 360


>gi|308153158|dbj|BAJ22168.1| DNA gyrase subunit B [Mycobacterium vaccae]
          Length = 419

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 176/421 (41%), Positives = 250/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALSS L+  ++++G  +  ++   +    L         TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSSRLEADVRKDGYEWFQTYDRSVP-GTLKQG-EKTTKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTTYDFETIARRLQEMAFLNKGLTIELTDERVTPTDVVDDVVSDHAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K  +  S I  +G      +++
Sbjct: 120 PKSAEEKAAEARAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFEGKGPGHEVEV 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKEKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK ++ K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKTVINK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FD++KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLSKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|219121760|ref|XP_002181228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407214|gb|EEC47151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1143

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 147/720 (20%), Positives = 256/720 (35%), Gaps = 71/720 (9%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLH 42
                 +Y     Q +  L+ +  RP  YIG  +  +                    GL 
Sbjct: 2   KKTVEETY-----QKMSQLEHILIRPDTYIGSVEPHTKLMFILEDDKIIEKEITYTPGLF 56

Query: 43  HMIYEVLDNAIDESLEG-YADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
            +  E++ NA D        D + VT+N  +   ++ +NG+GIP  +HKE GI   E+I+
Sbjct: 57  KIFDEIVVNAADNKQRDPNMDKLDVTINAEENVISIQNNGKGIPIVMHKEHGIYVPELIL 116

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNP 158
             L  G  F+    K +GG +G G  + N  S+   +       G  Y   F   +    
Sbjct: 117 GHLLTGSNFDDGERKTTGGRNGYGAKLANVFSTEFVVECADTENGLKYRQVFRENMKQKD 176

Query: 159 LVVT-----GSAGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSV--QI 208
             V               ++TF P  + F +   + DT+     R  +++   S    + 
Sbjct: 177 KPVVKALTAKEMKAADYVKITFSPDLERFKMDRLDEDTVGLLSKRAYDIAGTMSQSSGKK 236

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            L+     +    +     G+   ++     +   + +  R          ++ +  +D 
Sbjct: 237 LLVSLNGKKLPIKSFKDFIGVFEGINKPSAFETVRLANSDR---------WEVGVAASDD 287

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
                + F N+I    GGTH+  +   +   +   + K     K    V     +     
Sbjct: 288 AAMKQVSFVNSISTSKGGTHVQYIADQVASHLAKAITKKN---KKGGEVKASFIKNHLAI 344

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            ++  + +P F SQTKE + S          ++D     LE+       IV+ VL  S  
Sbjct: 345 FVNCLIENPAFDSQTKEFMTSKPKDFGSTCKLSDSFLKKLEKS-----AIVENVLAFSQF 399

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---R 445
           RD         ++K  L                 K   L + EGDSA   A  G S   R
Sbjct: 400 RDRQALKNKSGKKKAKLTGIDKLDDANFAGTAKSKDCTLIITEGDSAKSLAMAGLSVIGR 459

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIM 503
           +   + PLRGK LNV  A    + S++EI  ++  +G          +I +LRY  ++IM
Sbjct: 460 DYYGVFPLRGKPLNVRDAPIKAVTSNEEIKNVVEIMGLKFQTVYDETNIKQLRYGHLMIM 519

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
            D D DG+HI+ L++ F     PSL+   GFL     P+  +++G+  Q   +    E++
Sbjct: 520 ADQDNDGSHIKGLIINFIHNFWPSLLDIPGFLQQFITPIVKVSKGQKSQSFFNLPEYENW 579

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           L +   +                      +       L  D +     T      +  + 
Sbjct: 580 LESTGKNG----HGWKIKYYKGLGTSTSAEAKEYFSNL--DLHEVLPDTVQSGNDLIDMV 633

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKS---WHGSINNSDILVKRIARGVQEQFVLEG 679
             ++  E      + +A        +  K    +   IN   IL  +         +L+G
Sbjct: 634 FRKNRVEDRKQWLNAIAKDTFLNYSEVSKEGVMYSEFINREYILFSKSDNERSIPHLLDG 693


>gi|306451389|gb|ADM88870.1| DNA gyrase subunit B [Sphaerotilus natans subsp. sulfidovorans]
 gi|306451391|gb|ADM88871.1| DNA gyrase subunit B [Sphaerotilus natans subsp. sulfidovorans]
          Length = 387

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 212/389 (54%), Positives = 282/389 (72%), Gaps = 20/389 (5%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163
           VSGGLHGVGVS VN LS WL+L ++R+G ++++ F  G+              +P+ VTG
Sbjct: 1   VSGGLHGVGVSCVNGLSKWLRLTVRRDGRVHQIDFRKGVPQDRVIELRDGVETSPMRVTG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              +  GTEV FLP ++IF   + F+YD L  RLRELSFLN+ V+I L+D+R+   +E  
Sbjct: 61  ET-DKRGTEVHFLPDTEIFQQNNEFHYDILAKRLRELSFLNNGVKIRLVDERNG-GKEDN 118

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFT 277
             Y GG++ FV ++++ KK L  +     G +       I +++AM+WND + E+VLCFT
Sbjct: 119 FAYAGGVKGFVEFVNKGKKVLHPNIFHAVGEKPSDQGTTIGVEVAMQWNDAFSESVLCFT 178

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+GLR+A+TR I  Y+E +  +KK K  + G+D REG   V+S+K+P+P
Sbjct: 179 NNIPQRDGGTHLTGLRAAMTRVINKYIEDNDIAKKAKVEISGEDMREGLACVVSVKVPEP 238

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEVR+ VE  V+  L+ WL E+P +AK I  K++DA+  RDAAR+AR+
Sbjct: 239 KFSSQTKDKLVSSEVRAPVEDIVSRLLTDWLLENPTDAKTICGKIVDAARARDAARKARE 298

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKI
Sbjct: 299 MTRRKGVLDGLGLPGKLADCQEKDPTLCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKI 358

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIG 486
           LNVERAR++K+LSS EI TLITALGTGIG
Sbjct: 359 LNVERARYEKLLSSNEILTLITALGTGIG 387


>gi|146182234|ref|XP_001024182.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
           thermophila]
 gi|146143912|gb|EAS03937.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
           thermophila SB210]
          Length = 1680

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 133/707 (18%), Positives = 259/707 (36%), Gaps = 79/707 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT-----------DGES-----------GLHHMIYEVL 49
             + Q    L+ +  RP  Y+G             D  S            L+ +  E+L
Sbjct: 4   ETTYQKKTQLEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFDEIL 63

Query: 50  DNAIDESLE-------------------GYADIITVTLN-MDGSCTVSDNGRGIPTDLHK 89
            NA D                            + V ++  +   ++ ++G+GIP  +HK
Sbjct: 64  VNAADNYQSDLMIDRKQTNTFQFYKQRDKRMKRLDVIIDQKNNCISILNDGKGIPVQIHK 123

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYE 147
           E  I   E+I   L     +N +  KV GG +G G  + N  S+   +     +    ++
Sbjct: 124 EYNIYVPELIFGHLLTSSNYNDEEKKVVGGRNGFGAKLTNIFSTKFIVESADSKNKKKFQ 183

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLREL-SFLN 203
           M++   + +       S      T++TF P    F +++   D    ++ R+ ++   + 
Sbjct: 184 MTWTKNMSEQSEPQISSYTESDYTKITFYPDLKKFHMKELEKDIVDLMKKRVYDMAGVIG 243

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
            SV++SL  +R                     +         +             ++  
Sbjct: 244 GSVKVSLNGERISISSFSDYCDFYLKNQGAEVIKVSDNKGTNNQR----------WEVIA 293

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
             ++G  + V  F N+I    GGTH++ +   +T ++   ++K   S   K+       +
Sbjct: 294 SLSEGQFQQV-SFVNSICTSKGGTHVNYITDQITEKLMETLKKKEKSLNIKQFQ----VK 348

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
                 ++  + +P F +QTKE L   +        V++     L +       I+  +L
Sbjct: 349 SHLWIFVNCLIENPSFDTQTKETLTLRQQSFGSTCEVSEKFIKELLKSN-----IINHIL 403

Query: 384 DASMVRDAARRARDLTRRKG-VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
             +  ++ A+ A+ L+ +K   L          D   R+ +   L + EGDSA   A  G
Sbjct: 404 LQARAKEQAKMAKTLSAKKQSRLLGVPKLEDANDAGTRNAESCTLIITEGDSAKALAMSG 463

Query: 443 RS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
                R+   + PL+GK+LNV  +   ++  + EI  +I  +G  +  +  ++  LRY  
Sbjct: 464 IEVVGRDKFGVFPLKGKMLNVRDSTSKQITENLEIQNIIKVMGMKLNTNYDNVKSLRYGS 523

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEES 558
           I+IM D D DG+HI+ L + F     PSL   +GFL     P+  + +G         + 
Sbjct: 524 IMIMADQDHDGSHIKGLFINFIQNFWPSLFQMDGFLKEFITPIVKVRKGNQSISFFSIQD 583

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
            + +    +   +          +  +  +   +    I+K +  F  N      ++  I
Sbjct: 584 FKRW--KSTCPNQHLWKIKYYKGLGTSTDQEAQEYFGNINKHVISFKYNGKD---DEDAI 638

Query: 619 SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
              FN +  ++       K     N    +   ++   +N   I   
Sbjct: 639 DLAFNKKRAEDR-KKWLVKYDPEENVDHSQKHLTYKDFVNKELINFS 684


>gi|66826863|ref|XP_646786.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|74997376|sp|Q55BP5|TOP2_DICDI RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
           topoisomerase II
 gi|60474622|gb|EAL72559.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1521

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 129/608 (21%), Positives = 241/608 (39%), Gaps = 60/608 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDNAID 54
            Q  + LD +  RP  YIG T+ +                     G++ +  E+L NA D
Sbjct: 107 YQKKELLDQILLRPDTYIGSTERQEEELWVWEDKRMVHRKVSFVPGIYKIFDEILVNAAD 166

Query: 55  ES-LEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
               EG    I V ++ + G  +V+++G GIP  +H E  I   E+I   L     ++  
Sbjct: 167 NKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVHSEHKIYIPELIFGNLLTSSHYDDS 226

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVTGSAGNDT 169
             +++GG +G G  + N  S+   +     +   +Y+ +F N +       +T       
Sbjct: 227 EKRLTGGRNGFGAKLANIFSTKFIVECADSKSKKLYKQTFTNNMRSKEDPKITSYQNKTD 286

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T++TF P  D F + +F+ D +     R+ +++  N ++++SL D+             
Sbjct: 287 YTKITFYPELDRFGMVEFDDDLVALLSKRVYDIAGCNPTLKVSLNDEELGIRSFEKYINL 346

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
              +              ++  ++   + +   +LA+  +     N + F N+I    GG
Sbjct: 347 YFPDE-------------ENAPKVYYEKVSDRWELAVTLSKESQFNQVSFVNSICTVKGG 393

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH++   S +   I   V K     K    +     +   +  ++  + +P F SQTKE 
Sbjct: 394 THVTHALSNIVTAIQEQVNKKN---KGSADIKPAFIKNHLSVFVNCLIENPHFDSQTKET 450

Query: 347 LVSSEVRSVVESFVNDGLSAW-LEEHPLEAKIIVKKVL---DASMVRDAARRARDLTRRK 402
           L S           ++      L+        I++       +++ R  +   +      
Sbjct: 451 LTSKISSFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFKDQSALKRSTSSGGKKGKVSI 510

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             LD A+L G          +   L L EGDSA   A  G S   +++    PL+GK+LN
Sbjct: 511 PKLDDANLAGGT------KSEDCTLILTEGDSAKSLATAGISVVGKDHYGAFPLKGKLLN 564

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V      K++++ EI  ++T LG   G+    ++ LRY  ++IMTD D DG+HI+ L++ 
Sbjct: 565 VRDQST-KVINNDEINNIVTILGLKYGKVYETLSDLRYGHLMIMTDQDHDGSHIKGLIIN 623

Query: 520 FFFRQMPSLIHN-GFLYIIKPPLYGITR-GKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
                 P+L+   GFL     P+  + +  +             +        +++ +  
Sbjct: 624 MVHHFWPTLLRMPGFLVEFITPIVKVFKNNQKPISFYTMPEFLKWRETNDKGWDVKYYKG 683

Query: 578 SKGVISKN 585
                   
Sbjct: 684 LGTSTPGE 691


>gi|321401426|gb|ADW83175.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|321401432|gb|ADW83178.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 355

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 162/355 (45%), Positives = 226/355 (63%), Gaps = 7/355 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
            +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPL
Sbjct: 301 VQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPL 355


>gi|308152491|dbj|BAJ22224.1| DNA gyrase subunit B [Mycobacterium gilvum]
          Length = 421

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 181/422 (42%), Positives = 251/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ +++ I+R+G  +   +   +    L         TG
Sbjct: 3   NSGYAVSGGLHGVGVSVVNALSTRVEVTIQRDGYEWFQYYDRSVP-GELKQG-GKTKKTG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T V F    DIF   +++++T+  RL+E +FLN  + I L D+R                
Sbjct: 61  TTVRFWADPDIFETTEYDFETVARRLQEQAFLNKGLTIELTDERVTAEEVVDEVVSDTAE 120

Query: 215 --------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           + +     Y GG+  FV +++R K P+ QS I  +G      ++
Sbjct: 121 APKTADEKAAESSTGHKVKHRVFHYPGGLVDFVKHINRTKTPIQQSIIDFEGKAAGHEVE 180

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GD
Sbjct: 181 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGD 240

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W + +P EAK IV 
Sbjct: 241 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKICNEELTHWFDANPAEAKTIVN 300

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK
Sbjct: 301 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 360

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI
Sbjct: 361 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKI 419

Query: 501 II 502
           ++
Sbjct: 420 VL 421


>gi|188529795|gb|ACD62583.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 258/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEILKDGFVWRQRYDHSKP-TPLEK-GEETDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDTRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|321401434|gb|ADW83179.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 357

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 164/357 (45%), Positives = 228/357 (63%), Gaps = 7/357 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTG 163
           AGGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGXIYEQEYEKGKALYPVKQIG 61

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--- 219
                 GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +     
Sbjct: 62  ETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNF 120

Query: 220 -EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                    G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + N
Sbjct: 121 VSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+
Sbjct: 181 NINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL + EV S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++
Sbjct: 241 FEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREM 300

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
            +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRG
Sbjct: 301 VQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRG 357


>gi|188529777|gb|ACD62574.1| GyrB [Micromonospora sp. 81]
          Length = 393

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 178/397 (44%), Positives = 259/397 (65%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + G ++   + N   D+     G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDSLDK--GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN ++ I L+D+R       +PRE+T +Y
Sbjct: 59  SAVSFWPDPDVFETTDFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 EGGIADFVRHLNASKNPMHKTVVEFAAEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   N  L  W + +P EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNVRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+ GKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMLGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|22761957|dbj|BAC11765.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 250/394 (63%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++      T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLHETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++ +   K      I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDNN--IKTKDSRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|26891794|gb|AAN84792.1| DNA gyrase subunit B [Mesoplasma florum L1]
          Length = 389

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 172/393 (43%), Positives = 246/393 (62%), Gaps = 6/393 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEV 173
           K+SGGLHGVG SVVNALS ++ +++KREG I+   F  G      + + G   N+TGT V
Sbjct: 1   KISGGLHGVGASVVNALSLYVDVQVKREGKIHHQVFSGGGTQQTEIEIIGET-NETGTIV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IF    +F+Y+T+++++++LS+LN  + I L D R  +  E       GI  +
Sbjct: 60  RFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELNDLRIDKHVEYHF--PNGILDY 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V   +  K  +  S   +    D+I +++A+++N  Y EN++ F NNI   +GGTH  GL
Sbjct: 118 VKEKNETKVKINPSIFYVDDKHDDIEVEVALQYNAEYQENLITFVNNINTHEGGTHEDGL 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R +L R I  Y EK     K       DD +EG   ++SI+  DP++  QTK KL + + 
Sbjct: 178 RQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIVSIRHTDPQYEGQTKTKLANPDA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +  V++ V D    +L + P +AK I+ K  +A   R AA+RAR+ TRRK  LD  SLPG
Sbjct: 238 KKAVDAVVGDAFEEFLLKSPEDAKAIIDKNANAQKARIAAQRAREETRRKSALDTFSLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC  +DP+ +EL+LVEGDSAGGSAK GR+R  QAILPLRGK+LNVER    +  ++ 
Sbjct: 298 KLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAILPLRGKVLNVERVAEVRAFANN 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           EI +++TA+GTGI +D  D++KLRY KI+IMTD
Sbjct: 358 EIKSIVTAIGTGIKEDI-DLSKLRYGKIVIMTD 389


>gi|207093111|ref|ZP_03240898.1| DNA gyrase subunit B [Helicobacter pylori HPKX_438_AG0C1]
          Length = 168

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/168 (55%), Positives = 120/168 (71%), Gaps = 3/168 (1%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
            +Y + SI++LKGL+ V+KRP MYIGDT+   GLHHM+YEV+DNA+DES+ G+ D I +T
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +GSC V DNGRGIP D+H  E I A  V++T LHAGGKF+  +YKVSGGLHGVGVSV
Sbjct: 61  LTEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEV 173
           VNALS  L + IK+EG IY   F  GI  + L + G      ++GT +
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSDLEIIGKTKSAKESGTTI 168


>gi|88824781|gb|ABD52436.1| gyrase B [Staphylococcus aureus]
          Length = 398

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/389 (48%), Positives = 262/389 (67%), Gaps = 4/389 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS  L++ + R   IY  ++  G+    L   G   + TGT + F    
Sbjct: 12  LHGVGSSVVNALSXDLEVYVHRNETIYHQAYXKGVPRFDLKEVG-TTDKTGTVIRFKADG 70

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLD 237
           +IF+    +NY+TLQ R+REL+FLN  +QI+L D+R  E        Y+GGI+++V  L+
Sbjct: 71  EIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLN 130

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K+P+   PI I  S+D+I +++A+++  GY  N+L + NNI   +GGTH  G + ALT
Sbjct: 131 ENKEPIHDEPIYIHQSKDDIEVEIAIQYXSGYATNLLTYANNIHTYEGGTHEDGFKRALT 190

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY   S   K+D+  + G+D REG T+++SIK  DP+F  QTK KL +SEVR VV+
Sbjct: 191 RVLNSYGLSSXIMKEDQDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVD 250

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
              ++    +L E+P  A+ +V+K + A+  R AA++AR++TRRK  LD+ASLPGKLADC
Sbjct: 251 KLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADC 310

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           S + P++ E+FLVEGDSAGGS K GR    QAILPLRGKILNV +AR D++L++ EI  +
Sbjct: 311 SSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVXKARLDRILNNNEIRQM 370

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           ITA GTGIG D FD+ K RYHKI+IMTDA
Sbjct: 371 ITAFGTGIGGD-FDLAKARYHKIVIMTDA 398


>gi|51571559|emb|CAH18946.1| gyrase B [Corallococcus coralloides]
          Length = 362

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 191/365 (52%), Positives = 258/365 (70%), Gaps = 3/365 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGV+ VN LS W K+R++R G +YE S+  G+ +      G   +  GT + F
Sbjct: 1   VSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVSNGSPQEVG-TTDKRGTTIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            P S +    DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV Y
Sbjct: 60  KPDSTVMETVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISSFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L++ K+ L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++A
Sbjct: 118 LNKAKEALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +
Sbjct: 178 LTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGL 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  VND L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLA
Sbjct: 238 VEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLDGGGLPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC  RDP +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI 
Sbjct: 298 DCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIV 357

Query: 476 TLITA 480
           TLITA
Sbjct: 358 TLITA 362


>gi|145491451|ref|XP_001431725.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398830|emb|CAK64327.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1274

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 134/693 (19%), Positives = 249/693 (35%), Gaps = 54/693 (7%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------G 40
           M        Y     + +  ++ + +RP  YIG     S                    G
Sbjct: 1   MRQKTIEEQY-----KKMTHIEHILQRPDTYIGSIQRTSEQMWIIQNGKMIQKEIEYVPG 55

Query: 41  LHHMIYEVLDNAIDESLE---GYA-DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
              +  E+L NA D        +    I V +      T+ ++G  IP ++HKE  I   
Sbjct: 56  FFKIFDEILVNAADNLQRDTRQHKQSYIKVDIG--NEITIKNDGLPIPVEIHKEYQIYVP 113

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E+I      G  F+    +V GG +G G  + N  S+   L +    N +++ + N + +
Sbjct: 114 ELIFGVFLTGSNFDDSEKRVVGGRNGYGAKLTNVYSTEFTLEVCDGNNYFKLVWNNNMSN 173

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
             +        D    +++ P    F +++   DT     R +  L       +    + 
Sbjct: 174 KQIPTIKQLKKDPYVSISYKPDYKRFGMKEIEADTQALLTRRVYDLAGIYGSKINVYLND 233

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           E  +I        + +V      +  +      +   R  + +  +           + F
Sbjct: 234 EKIKI-----NSFQKYVDLYLPTEGAIKIFDKDMTTPRWEVVVSYSPTQF-----QHVSF 283

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I    GGTH++ +   + ++I + +  +   K     V     ++     ++  + +
Sbjct: 284 VNAIYTAKGGTHVNYVTDKIIQEIQNEMNNNK--KYKSIEVQKYQIKQSLWVFINCLIDN 341

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F SQTKE + +        S     ++    +  ++  II      A    DA    +
Sbjct: 342 PTFDSQTKENMTTKVSEFGGSSEEKFKVTEKFSKALIKTDIIETIFQQAKAKADAKLNKQ 401

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPL 453
               + G L          D  +++ +   L L EGDSA   A  G     R+   + PL
Sbjct: 402 LKGTKTGRLHGIEKLDDANDAGKKNSELCTLILTEGDSAKALAMAGIDIVGRDRYGVFPL 461

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           +GK+LNV  A   ++L ++EI  LI  +G    +   D+  LRY  ++IMTD D+DG+HI
Sbjct: 462 KGKLLNVREASLKQILQNEEIENLIKIIGLQKERQYTDLKSLRYGSVMIMTDQDIDGSHI 521

Query: 514 RTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           + L++ F     PSL+ ++GFL     PL   T+G         +    +   + +    
Sbjct: 522 KGLIINFIHHFWPSLVKYSGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQEEDIKNWK 581

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
             +    G     + + +  +       I+  Y   D         +     +       
Sbjct: 582 IKYYKGLGTSDDQEAQEYFKNLRT--HTIQFRYDGDDDDSSIDLCFN-----KKKANDRK 634

Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
              ++  + L     KSE  +   I+   I   
Sbjct: 635 QWLAQYNHDLYVDHTKSELGYSEFIHKELIHFS 667


>gi|294963292|gb|ADF50133.1| DNA gyrase subunit B [Bacillus pumilus]
 gi|294963308|gb|ADF50141.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 175/363 (48%), Positives = 250/363 (68%), Gaps = 2/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    
Sbjct: 1   VNALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + 
Sbjct: 60  FDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEE 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ I+G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K
Sbjct: 120 PVYIEGEKDGITIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARK 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  
Sbjct: 180 NGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEK 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE
Sbjct: 240 FLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG
Sbjct: 300 LYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIG 359

Query: 487 QDS 489
           +D 
Sbjct: 360 EDF 362


>gi|6729164|dbj|BAA89715.1| DNA gyrase subunit B [Actinoplanes brasiliensis]
          Length = 396

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 178/400 (44%), Positives = 263/400 (65%), Gaps = 12/400 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALSS + + I + GN++   +       PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSSKMFVEIHKSGNVWRQHYTASKP-GPLEK-GETTSTTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           + V F P   +F   +F++ T+  RL+E++FLN  + I+L D+R      + EPR++T  
Sbjct: 59  SMVQFWPDPTVFETVEFDWQTIYRRLQEMAFLNRGLTINLTDERAESADDNGEPRKVTFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y GGI  FV +L+  K  + ++ +  Q   +   +++++AM+WN+ Y E+V  F N I  
Sbjct: 119 YAGGIADFVRHLNATKSAIHKTVVEFQAEDNEARMAVEIAMQWNESYGESVYTFANRINT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y +      K  +++ G+D REG  +++S+ + +P+F  Q
Sbjct: 179 HEGGTHEEGFRAALTGVVNRYGKDKK-LLKGDQNLSGEDIREGLAAIISVTLANPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +++++S V+   N+ L+ W + +P EAK I+ K   A+  R AA++AR L RRK
Sbjct: 238 TKTKLGNTDMKSFVQKVANEQLADWFDRNPAEAKSIITKADQAARARIAAQQARKLARRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
            +L+  S+PGKLADC   DP++SELF+VEGDSAGGSAKQGR+   QAILP+RGKILNVE+
Sbjct: 298 SLLESGSMPGKLADCQSTDPRESELFIVEGDSAGGSAKQGRNSRIQAILPIRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AR D++L + E+ +LITALGTGI +D FD+ KLRYHKI++
Sbjct: 358 ARIDRVLKNNEVQSLITALGTGIHED-FDVAKLRYHKIVL 396


>gi|27530805|dbj|BAC54050.1| DNA gyrase subunit B [Nocardia sp. MBIC05582]
          Length = 415

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 178/418 (42%), Positives = 246/418 (58%), Gaps = 29/418 (6%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L   +   G+ +  ++   +   PL   G   + TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTTLLAEVDNAGHHWTQTYDRSVP-GPLKK-GEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE---------- 220
           T ++F P  DIF    F ++T+  RL+E++FLN  + I L D+R+ +             
Sbjct: 59  TSISFWPDPDIFETTVFKFETVARRLQEMAFLNKGLTIVLTDERASDAERIADETADSEL 118

Query: 221 ----------------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
                            T  Y GG+E +V Y+++ K     S I          +++AM+
Sbjct: 119 AEAPKPEGDSESRIKTKTYHYPGGLEDYVRYINKSKTAQHPSVIGFGAKGTGHELEIAMQ 178

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WN  Y E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+    + GDD RE
Sbjct: 179 WNQTYTESVHTFANTINTHEGGTHEEGFRTALTTVVKKYAKEKKLVKEKDGELSGDDIRE 238

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +++S+K+ +P+F  QTK KL ++EV+S V+    + L+ W E +P EAK+IV K + 
Sbjct: 239 GLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKASGEHLTHWFEANPAEAKLIVSKAVA 298

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           +   R AARRARDL RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR 
Sbjct: 299 SMQARTAARRARDLVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAKSGRD 358

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
              QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 SMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 415


>gi|294963306|gb|ADF50140.1| DNA gyrase subunit B [Bacillus pumilus]
 gi|294963320|gb|ADF50147.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 175/363 (48%), Positives = 250/363 (68%), Gaps = 2/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    
Sbjct: 1   VNALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + 
Sbjct: 60  FDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEE 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ I+G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K
Sbjct: 120 PVYIEGEKDGITIEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARK 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  
Sbjct: 180 NGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEK 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE
Sbjct: 240 FLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG
Sbjct: 300 LYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIG 359

Query: 487 QDS 489
           +D 
Sbjct: 360 EDF 362


>gi|261228548|dbj|BAI44529.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228550|dbj|BAI44530.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228552|dbj|BAI44531.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 411

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 172/414 (41%), Positives = 250/414 (60%), Gaps = 32/414 (7%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+SVVNALS+ L + IK +G  ++ ++ +      L V G    +TGT V+F  
Sbjct: 1   GGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKP-GEL-VQGDPTKETGTTVSFWA 58

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------------------- 216
             +IF    +N++T+  RL+E++FLN  + I+L D+R+                      
Sbjct: 59  DPEIFETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVGEAPKSAAEEAE 118

Query: 217 --------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y GG+E +V ++++ K P+  S +          +++AM+WN G
Sbjct: 119 EAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGHELEVAMQWNSG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y  +    K     + GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  
Sbjct: 239 IISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNKAVSSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   D+  LPGKLADC   DP+KSE+++VEGDSAGGSAK GR    Q
Sbjct: 299 RVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 411


>gi|168070985|ref|XP_001787012.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659945|gb|EDQ48174.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 371

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 154/374 (41%), Positives = 226/374 (60%), Gaps = 16/374 (4%)

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           A+DE L  Y   I +T++ DGS TV DNGRGIPT +H + GI   +V+ T LHAGGKF  
Sbjct: 1   AVDEHLAKYCTRIDITVHKDGSITVLDNGRGIPTGMH-KTGIPTPQVVYTILHAGGKFGG 59

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVV 161
             YK SGGLHGVG SV NALS WL++ I REG I+ M F            G     L V
Sbjct: 60  SGYKKSGGLHGVGASVTNALSEWLEVEIYREGKIHRMRFEYWQDKNGKEHVGEPVTGLEV 119

Query: 162 TGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
            G+  N TGT+VTF P + +F    +  YDTL  RL+E++FLNS ++I L D+R+   R+
Sbjct: 120 LGNT-NKTGTKVTFKPDARVFQGGINVTYDTLAERLQEIAFLNSGLRIVLKDERAD--RQ 176

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
              FY+GG   FV +L+  K  +    I   G ++++ +++A+++N GY E +  F N+I
Sbjct: 177 DEFFYEGGASQFVEFLNEGKDVMH-DVIHFYGEKEDVEVEVALQYNAGYTETIASFVNSI 235

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           P + GGTH +G ++A TR +  Y  K+   K+  +++ G+D REG  +V+S+KM +  F 
Sbjct: 236 PTRGGGTHETGFKTAYTRVMNDYARKNHLLKEKDKNLEGNDLREGMMAVISVKMAEVEFV 295

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK++L S+  RS V++ V++ +  +LEE+P  A+ ++KK + AS  R+AAR+ARD  R
Sbjct: 296 GQTKDQLGSASARSTVDAVVSEKMQIFLEENPQVAQTLIKKAIQASKAREAARKARDDMR 355

Query: 401 RKGVLDIASLPGKL 414
                  +S  G  
Sbjct: 356 SGKKRSESSNLGGK 369


>gi|254055377|gb|ACT64288.1| GryB [Pseudomonas sp. R14-24-07]
 gi|254055381|gb|ACT64290.1| GryB [Pseudomonas sp. R5-90-07]
 gi|254055385|gb|ACT64292.1| GryB [Pseudomonas fluorescens]
          Length = 362

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 207/365 (56%), Positives = 274/365 (75%), Gaps = 3/365 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ 
Sbjct: 1   GVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSAET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 TYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+D
Sbjct: 238 KYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL
Sbjct: 298 PALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 357

Query: 482 GTGIG 486
           G GIG
Sbjct: 358 GCGIG 362


>gi|119226136|dbj|BAF41047.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228538|dbj|BAI44524.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228540|dbj|BAI44525.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228542|dbj|BAI44526.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228544|dbj|BAI44527.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228546|dbj|BAI44528.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228554|dbj|BAI44532.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228556|dbj|BAI44533.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228558|dbj|BAI44534.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228560|dbj|BAI44535.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228562|dbj|BAI44536.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228564|dbj|BAI44537.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228566|dbj|BAI44538.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228568|dbj|BAI44539.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228570|dbj|BAI44540.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228572|dbj|BAI44541.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228574|dbj|BAI44542.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228576|dbj|BAI44543.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228578|dbj|BAI44544.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 411

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 172/414 (41%), Positives = 250/414 (60%), Gaps = 32/414 (7%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG+SVVNALS+ L + IK +G  ++ ++ +      L V G    +TGT V+F  
Sbjct: 1   GGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKP-GEL-VQGDPTKETGTTVSFWA 58

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------------------- 216
             +IF    +N++T+  RL+E++FLN  + I+L D+R+                      
Sbjct: 59  DPEIFETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPKSAAEEAE 118

Query: 217 --------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   + +     Y GG+E +V ++++ K P+  S +          +++AM+WN G
Sbjct: 119 EAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGHELEVAMQWNSG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y  +    K     + GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  
Sbjct: 239 IISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNKAVSSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   D+  LPGKLADC   DP+KSE+++VEGDSAGGSAK GR    Q
Sbjct: 299 RVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 411


>gi|22761993|dbj|BAC11783.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 253/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPVISFKSMDEETCTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|188529751|gb|ACD62562.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 181/397 (45%), Positives = 257/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLEK-GEETDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F    F++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVGFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFGAGETGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDERLSGEDTREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AAR+AR L RRK +L
Sbjct: 238 KLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAARQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|22761973|dbj|BAC11773.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 254/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +    +   SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPVISFKSMDEKTRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|4996802|dbj|BAA78446.1| subunit B protein of DNA gyrase [bacterium rM6]
          Length = 297

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 146/296 (49%), Positives = 190/296 (64%), Gaps = 32/296 (10%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGIS 94
           GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E   S
Sbjct: 1   GLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPKRS 59

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G  YE+ F  G 
Sbjct: 60  AAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFSRGH 119

Query: 155 L------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           +             +P+ V G + +  GT+V FLP  +IF     F Y+ L  RLRELSF
Sbjct: 120 VQNRLIEVVDGAEVSPMRVVGES-DKRGTKVHFLPDQEIFKENFDFRYEILAKRLRELSF 178

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD------ 255
           LN+ V+I L D+R  +         GG++ FV +++  KK L  +     GSR       
Sbjct: 179 LNNGVRIRLKDERDGKE--DDFSGAGGVKGFVEFINGTKKVLHPTAFHAMGSRPAETYGG 236

Query: 256 ----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++
Sbjct: 237 IPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQN 292


>gi|119226132|dbj|BAF41045.1| DNA gyrase subunit B [Rhodococcus corynebacterioides]
 gi|308153214|dbj|BAJ22196.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 415

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 178/418 (42%), Positives = 246/418 (58%), Gaps = 29/418 (6%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ L   +   G+ +  ++   +   PL   G   + TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTTLLAEVDNAGHHWTQTYDRSVP-GPLKK-GEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T ++F P  DIF    F ++T+  RL+E++FLN  + I L D+R                
Sbjct: 59  TSISFWPDPDIFETTVFKFETVARRLQEMAFLNKGLTIVLTDERASDAERIADETADNEL 118

Query: 215 ----------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
                       + +  T  Y GG+E +V Y+++ K     S I          +++AM+
Sbjct: 119 AEMPKAEGDADTKVKTKTYHYPGGLEDYVRYINKSKTAQHPSVIGFGAKGTGHELEIAMQ 178

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WN  Y E+V  F N I   +GGTH  G R+ALT  +  Y ++    K+    + GDD RE
Sbjct: 179 WNQTYTESVHTFANTINTHEGGTHEEGFRTALTTVVKKYAKEKKLVKEKDGDLSGDDIRE 238

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +++S+K+ +P+F  QTK KL ++EV+S V+    + L+ W E +P EAK+IV K + 
Sbjct: 239 GLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKAAGEHLTHWFEANPAEAKLIVSKAVA 298

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           +   R AARRARDL RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR 
Sbjct: 299 SMQARTAARRARDLVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAKSGRD 358

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
              QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 SMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 415


>gi|4996806|dbj|BAA78448.1| subunit B protein of DNA gyrase [bacterium rM10]
          Length = 299

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 151/303 (49%), Positives = 198/303 (65%), Gaps = 32/303 (10%)

Query: 40  GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGIS 94
           GLHH+++EV+DN+IDE+L GY D I VT++ DGS +V DNGRGIPT     D H E   S
Sbjct: 1   GLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPKRS 59

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALSSWLKL ++REG  +E+ F  G 
Sbjct: 60  AAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDFSRGH 119

Query: 155 L------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           +             +P+ + G   +  GT+V FLP ++IF     F Y+ L  RLRELSF
Sbjct: 120 VQNRLIEVVDGFEVSPMRIIGQT-DKRGTKVHFLPDTEIFKENHEFRYEILAKRLRELSF 178

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD------ 255
           LN+ V+I L D+R  + RE      GG++ FV +++  KK L  +     GSR       
Sbjct: 179 LNNGVRIRLKDER--DGREDDFSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRPAESYGG 236

Query: 256 ----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                I ++++M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +K
Sbjct: 237 IPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAK 296

Query: 312 KDK 314
           K K
Sbjct: 297 KAK 299


>gi|62085700|gb|AAX63242.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 425

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 187/428 (43%), Positives = 254/428 (59%), Gaps = 38/428 (8%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++        L   G
Sbjct: 1   HAGGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGYNWEQTYSYAKP-GALEQ-G 58

Query: 164 SAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------- 215
           SA   TGT V F P  +IF     FN +T+  RL+E++FLN  + I+L D+R        
Sbjct: 59  SATRKTGTTVRFWPDPEIFSETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPG 118

Query: 216 ---------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
                                       +P+  T  Y  G+  ++ +L+R K+ +  + I
Sbjct: 119 DADGDEDGGSTEAAEVVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVI 178

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                 D   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y     
Sbjct: 179 GFNAKGDGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKK 238

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K+    + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L  W 
Sbjct: 239 LLKEKDGKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQRTCNEHLGHWF 298

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           E +P EAKIIVKK +D+S  R AARRAR++ RRK   DI  LPGKLADC   DP K E++
Sbjct: 299 EANPAEAKIIVKKAVDSSQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVY 358

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D
Sbjct: 359 IVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HD 417

Query: 489 SFDINKLR 496
            FDI+KLR
Sbjct: 418 EFDISKLR 425


>gi|327200403|gb|AEA36081.1| DNA gyrase subunit B [Rhizobium hainanense]
          Length = 354

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 252/354 (71%), Positives = 306/354 (86%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS WLKL+I+R+G I+EMSF +G+ D PL  TG AGN TGTEV+F+PSS
Sbjct: 1   LHGVGVSVVNALSVWLKLKIRRQGRIHEMSFTHGVADAPLKETGDAGNATGTEVSFMPSS 60

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFVSYLDR 
Sbjct: 61  ETFTMIEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQEELLYDGGLEAFVSYLDRA 120

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           KKPL+Q P+ I+  +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ
Sbjct: 121 KKPLVQKPVSIRSEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQ 180

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           ITSY + S  +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSS+VR VVES 
Sbjct: 181 ITSYADSSGITKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSKVRPVVESL 240

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           VN+ LS WLEEHP EAK++V KV++A+  R+AAR+AR+LTRRKG LDIASLPGKLADCSE
Sbjct: 241 VNEALSTWLEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSE 300

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           RDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE
Sbjct: 301 RDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 354


>gi|224007473|ref|XP_002292696.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971558|gb|EED89892.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1172

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 122/595 (20%), Positives = 228/595 (38%), Gaps = 60/595 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------------GLHH 43
            ++ Q+   L+ +  RP  YIG T+  +                            G   
Sbjct: 4   EETYQMKTQLEHILLRPDTYIGSTEPLTQPMFVLSTTTNTPPSPPRIIQREVTYTPGFLK 63

Query: 44  MIYEVLDNAIDESLEG-YADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMT 101
           +  E++ NA D        D + V ++++G   +V +NG+GIP  +HK++G     +I  
Sbjct: 64  IYDEIIVNAADNKQRDPNMDRLDVDIDVEGGVISVCNNGKGIPVVIHKDQGCYVPTMIFG 123

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPL 159
            L  G  F+    K +GG +G G  + N  S+   +      EG  ++  F N +     
Sbjct: 124 HLLTGSNFDDDEMKTTGGRNGYGAKLANIFSTEFIVECVDSNEGLKFKQVFRNNMHKTEE 183

Query: 160 VVTGSA-----GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
                           T++TF P  + FS+   N D +    +    +  ++       +
Sbjct: 184 PKIKKCSASEMKKGDYTKITFKPDFEKFSMTRLNEDAVGLLAKRAYDIAGTM-----GSK 238

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
             +   + +  K                +          +     ++ +  +DG  + + 
Sbjct: 239 EGKKLSVYLNGKKLSVKGFKSYLALFDGINPPAAY---EKVGDRWEVGISVSDGSFQQI- 294

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N+I    GG H+  +   +  ++   V+K     K    V     +   +  ++  +
Sbjct: 295 SFVNSISTTKGGGHVDHIAEMVVTRLKDLVKKKN---KGGAHVKPAQIKNHLSIFVNCLV 351

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P+F SQTKE L + +     E  +++     +++       +V  ++  +  ++    
Sbjct: 352 ENPKFDSQTKENLTTKKSTFRSEVQLSEKFLKQVDKCG-----VVDSIMAYAKFKEGQAL 406

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAIL 451
            R    +K  L   +             K   L + EGDSA   A  G S   R+   + 
Sbjct: 407 KRKGGTKKNKLTGITKLDDANHAGTAKSKDCTLIITEGDSAKSLAVSGLSVVGRDFYGVF 466

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTDADVD 509
           PL+GK LNV  A   +++ ++EI  L+  +G          +I  LRY  ++IMTD D D
Sbjct: 467 PLKGKPLNVRDATHFQIMKNEEISNLVAIMGLKFDTTYTEENIKSLRYGHLMIMTDQDHD 526

Query: 510 GAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           G+HI+ L++ F  +  PSL+    FL     P+   T+GK           E++ 
Sbjct: 527 GSHIKGLIINFLHKFWPSLLDIPDFLMQFITPIVKCTKGKKFHTFFTLPEYEEWK 581


>gi|254055367|gb|ACT64283.1| GryB [Pseudomonas sp. R11-23-07]
 gi|254055371|gb|ACT64285.1| GryB [Pseudomonas sp. R2-7-07]
 gi|254055373|gb|ACT64286.1| GryB [Pseudomonas sp. R4-35-07]
 gi|254055375|gb|ACT64287.1| GryB [Pseudomonas sp. R4-34-07]
          Length = 362

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 207/365 (56%), Positives = 274/365 (75%), Gaps = 3/365 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSAET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSAKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 TYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+D
Sbjct: 238 KYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL
Sbjct: 298 PALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 357

Query: 482 GTGIG 486
           G GIG
Sbjct: 358 GCGIG 362


>gi|189182408|gb|ACD81923.1| DNA gyrase subunit beta [Shewanella livingstonensis]
          Length = 336

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 191/339 (56%), Positives = 254/339 (74%), Gaps = 4/339 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R G IYE  + +GI D P+   G + 
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRAGKIYEQFYTHGIPDAPIKEIGDS- 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGTE+ F PSSD F+  +F+++ L  R+RELSFLNS V I L+D+   +       Y+
Sbjct: 60  VKTGTELRFWPSSDTFTDVEFHFEILAKRVRELSFLNSGVAIRLVDEIENKD--EFFKYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           GGI AFV YL+R+K P+ +        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DG
Sbjct: 118 GGISAFVDYLNRNKTPINKDVFHFSQERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R ALTR + +Y+E+   +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+
Sbjct: 178 GTHLAGFRGALTRNLNNYMEREGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV+S VE  + + L+ +L E+P +AK+IV K++DAS  R+AAR+AR++TRRKG L
Sbjct: 238 KLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDASRAREAARKAREMTRRKGAL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           D+  LPGKLADC E+DP  SE+++VEGDSAGGSAKQGR+
Sbjct: 298 DLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRN 336


>gi|308153122|dbj|BAJ22150.1| DNA gyrase subunit B [Micromonospora citrea]
          Length = 389

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 183/393 (46%), Positives = 257/393 (65%), Gaps = 9/393 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + N     PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVVIHKDGFVWRQQYQNSKP-TPLEK-GEPTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FLN  V I L+D+R       +PRE+T  Y
Sbjct: 59  SAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRGVTIHLLDERVPEEEEGKPREVTFCY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           KGGI  FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +G
Sbjct: 119 KGGIADFVRHLNASKNPIHKTVVEFGSEEEGMSVEIAMQWNESYGESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGT-EKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRVQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           D++L + E+  LITALGTGI  D FDI KLRYH
Sbjct: 358 DRVLKNAEVQALITALGTGI-HDDFDIEKLRYH 389


>gi|6729168|dbj|BAA89717.1| DNA gyrase subunit B [Actinoplanes missouriensis]
          Length = 395

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 176/398 (44%), Positives = 257/398 (64%), Gaps = 12/398 (3%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +YKVSGGLHGVGVSVVNALS+ + + I + G ++   + N     PL   G   + TG+ 
Sbjct: 2   AYKVSGGLHGVGVSVVNALSTKMAVEIHKAGFVWRQKYDNSKP-GPLDK-GETTDKTGST 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYK 226
           V F P  D+F   +F++ T+  RL+E++FLN  + I+  D+R      + E R++T  Y 
Sbjct: 60  VQFWPDPDVFETVEFDFQTIYRRLQEMAFLNRGLTINFTDERPVSADENGEARKVTFMYA 119

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           GGI  FV +L+  K P+ +S I      D   + +++AM+WN+ Y E+V  F N I   +
Sbjct: 120 GGIADFVRHLNATKSPIHKSVIEFGAEDDAAGMGVEVAMQWNESYGESVYTFANRINTHE 179

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH  G R+ALT  +  Y  +    K   + + G+D REG  +++S+ + +P+F  QTK
Sbjct: 180 GGTHEEGFRAALTTIVNKYGIEKKFLK-GDQKLSGEDIREGLAAIISVTLREPQFEGQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +++++S V+   N+ L+ W + +P +AK+I+ K   A+  R AA++AR L RRK +
Sbjct: 239 TKLGNTDMKSFVQKVANEQLADWFDRNPADAKLIITKADQAARARIAAQQARKLARRKSL 298

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+  S+PGKLADC   DP+++ELF+VEGDSAGGSAK GR    QAILP+RGKILNVE+AR
Sbjct: 299 LESGSMPGKLADCQSTDPRETELFIVEGDSAGGSAKSGRESRIQAILPIRGKILNVEKAR 358

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            D++L + E+  LITA+GTGI  D FD+ KLRYHKII+
Sbjct: 359 IDRVLKNNEVQALITAMGTGI-HDEFDLTKLRYHKIIL 395


>gi|186510360|ref|NP_001118686.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
           topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
           DNA-dependent ATPase [Arabidopsis thaliana]
 gi|332643306|gb|AEE76827.1| DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1438

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 136/599 (22%), Positives = 245/599 (40%), Gaps = 62/599 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            +  Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 32  EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEILVN 91

Query: 52  AIDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           A D     +     D + V ++++    +V ++G G+P ++H+EEGI   E+I   L   
Sbjct: 92  AADNKQRDAKM---DSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTS 148

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-LDNPLVVT 162
             ++    K +GG +G G  + N  S+   +    +G     Y+  F N +   +  V+T
Sbjct: 149 SNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGKRLKKYKQVFENNMGKKSEPVIT 207

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL----SFLNSSVQISLIDKRSPEP 218
               ++  T+VTF P    F++ +   D +    + +      L  SV++ L  K+ P  
Sbjct: 208 KCNKSENWTKVTFKPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVK 267

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                           YL    K   + P+     + N   ++ +  ++G  + V  F N
Sbjct: 268 SFTDYVD--------LYLSAANKSRTEDPLPRLTEKVNDRWEVCVSLSEGQFQQV-SFVN 318

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           +I    GGTH+  +    T QIT+++  +   K    +V   + +      ++  + +P 
Sbjct: 319 SIATIKGGTHVDYV----TSQITNHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPA 374

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F SQTKE L   +     +  +++     + +  +   ++       +     +  A+  
Sbjct: 375 FDSQTKETLTLRQSSFGSKCELSEDFLKKVGKSGVVENLLSWADFKQNKDLKKSDGAKTG 434

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR---ENQAILPLRG 455
                 LD A+  G       ++ +   L L EGDSA   A  GRS        + PLRG
Sbjct: 435 RVLVEKLDDAAEAGG------KNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRG 488

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNV  A   ++ +++EI  L   LG        ++N LRY +++IMTD D DG+HI+ 
Sbjct: 489 KLLNVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKG 548

Query: 516 LLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRG--KSLQYVKDEESLEDYLINQSLSEE 571
           LL+ F     PSL+      +    P+   TR   K +         E++  +   +  
Sbjct: 549 LLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKESLKGNAT 607


>gi|27530789|dbj|BAC54042.1| DNA gyrase subunit B [Gordonia sp. MBIC04145]
          Length = 435

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 182/438 (41%), Positives = 255/438 (58%), Gaps = 49/438 (11%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            ++Y VSGGLHGVG+SVVNALS+ ++L I   G+ +  ++   +   PL   G+    TG
Sbjct: 1   SEAYAVSGGLHGVGISVVNALSTKVELAIAYGGSHWSQTYTRAVP-GPLEK-GAGTRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T V F    DIF   D+N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPDIFETTDYNFETIARRLQEMAFLNKGLTITLTDERPKVVNDVDDVEQAEAI 118

Query: 216 -------------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLM 244
                                           +PR  T  Y GG+  +V++L+R K P+ 
Sbjct: 119 GAAAESADEATDVADGDAIVEPGPDTEKKDPGKPRTRTYHYPGGLMDYVAHLNRTKSPIH 178

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            S +          +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y 
Sbjct: 179 ASIVGFTAKGTGHELEVAMQWNGGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYA 238

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K+    + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L
Sbjct: 239 LDKKLLKEKDPKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKVSNEHL 298

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WLE +P EAKII+ K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP +
Sbjct: 299 SHWLESNPAEAKIIINKAVGSAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPAR 358

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            E+++VEGDSAGGSAK GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTG
Sbjct: 359 CEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTG 418

Query: 485 IGQDSFDINKLRYHKIII 502
           I  D FD+ KLRYHKI++
Sbjct: 419 I-HDEFDLAKLRYHKIVL 435


>gi|254055379|gb|ACT64289.1| GryB [Pseudomonas sp. R5-89-07]
 gi|254055383|gb|ACT64291.1| GryB [Pseudomonas sp. L1-11-07]
          Length = 362

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 207/365 (56%), Positives = 274/365 (75%), Gaps = 3/365 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFKPSAET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSAKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 TYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+D
Sbjct: 238 KYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL
Sbjct: 298 PALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 357

Query: 482 GTGIG 486
           G GIG
Sbjct: 358 GCGIG 362


>gi|19912133|dbj|BAB88378.1| DNA gyrase subunit B [Flavobacterium ferrugineum]
          Length = 394

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 186/395 (47%), Positives = 260/395 (65%), Gaps = 13/395 (3%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVS VNALS+ L + ++REG ++E  +  G+   P+ V G +  +TGT V F
Sbjct: 1   VSGGLHGVGVSCVNALSTHLHVTVQREGKVFEQEYRIGVPQYPVRVVGESE-NTGTRVQF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----DKRSPEPREITMFYKGGIEA 231
            P   IF+   +N + L+ RLRELSFLN  V+I+L      +   +P   + F +GGI  
Sbjct: 60  WPDDTIFTSTVYNKEILEGRLRELSFLNRGVRINLTDLREQEEDGQPYTKSFFSEGGIVE 119

Query: 232 FVSYLDRH--KKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           FV  LD +  +  L+   I ++G  +N  +++++A+ +N+ Y E++  + NNI   +GGT
Sbjct: 120 FVEMLDTNAGRTTLIPKVISVEGHDNNTNVAVEVALSYNNSYAEHIYSYVNNINTIEGGT 179

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+SG R ALTR   +Y +++   +K K  + GDD REG ++++S+K+P+P+F  QTK KL
Sbjct: 180 HVSGFRRALTRVFKAYGDRNSLFEKAKVEIEGDDFREGLSAIISVKVPEPQFEGQTKTKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +S+V  VV+S V+  L A+LEE+P EAK IV KV+ A+  R AAR+AR+L +RK VL  
Sbjct: 240 GNSDVMGVVDSTVSRVLEAYLEENPKEAKSIVAKVILAAQARAAARKARELVQRKTVLTG 299

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKLADCS+RD +K ELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K
Sbjct: 300 GGLPGKLADCSDRDAEKCELFLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMEHK 359

Query: 468 MLSSQEIGTLITALGTGIGQDSFDIN----KLRYH 498
           +  ++EI  + TALG  +G           KLRYH
Sbjct: 360 IYENEEIRNMYTALGVTVGTPEDPKELNLTKLRYH 394


>gi|15229538|ref|NP_189031.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
           topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
           DNA-dependent ATPase [Arabidopsis thaliana]
 gi|1174740|sp|P30182|TOP2_ARATH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis thaliana]
 gi|9294657|dbj|BAB03006.1| DNA topoisomerase II [Arabidopsis thaliana]
 gi|332643305|gb|AEE76826.1| DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1473

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 136/599 (22%), Positives = 245/599 (40%), Gaps = 62/599 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            +  Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 32  EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEILVN 91

Query: 52  AIDE----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           A D     +     D + V ++++    +V ++G G+P ++H+EEGI   E+I   L   
Sbjct: 92  AADNKQRDAKM---DSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTS 148

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-LDNPLVVT 162
             ++    K +GG +G G  + N  S+   +    +G     Y+  F N +   +  V+T
Sbjct: 149 SNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGKRLKKYKQVFENNMGKKSEPVIT 207

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL----SFLNSSVQISLIDKRSPEP 218
               ++  T+VTF P    F++ +   D +    + +      L  SV++ L  K+ P  
Sbjct: 208 KCNKSENWTKVTFKPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVK 267

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                           YL    K   + P+     + N   ++ +  ++G  + V  F N
Sbjct: 268 SFTDYVD--------LYLSAANKSRTEDPLPRLTEKVNDRWEVCVSLSEGQFQQV-SFVN 318

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           +I    GGTH+  +    T QIT+++  +   K    +V   + +      ++  + +P 
Sbjct: 319 SIATIKGGTHVDYV----TSQITNHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPA 374

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F SQTKE L   +     +  +++     + +  +   ++       +     +  A+  
Sbjct: 375 FDSQTKETLTLRQSSFGSKCELSEDFLKKVGKSGVVENLLSWADFKQNKDLKKSDGAKTG 434

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR---ENQAILPLRG 455
                 LD A+  G       ++ +   L L EGDSA   A  GRS        + PLRG
Sbjct: 435 RVLVEKLDDAAEAGG------KNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRG 488

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNV  A   ++ +++EI  L   LG        ++N LRY +++IMTD D DG+HI+ 
Sbjct: 489 KLLNVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKG 548

Query: 516 LLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRG--KSLQYVKDEESLEDYLINQSLSEE 571
           LL+ F     PSL+      +    P+   TR   K +         E++  +   +  
Sbjct: 549 LLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKESLKGNAT 607


>gi|319958746|gb|ADV90543.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 366

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 175/368 (47%), Positives = 252/368 (68%), Gaps = 3/368 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    F+Y
Sbjct: 1   LSTTLDVTVYRDGKIHHQQFKRGVPVGDLKIIGET-DVTGTTTHFVPDPEIFTETIEFDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           DTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+  
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGV 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ +S  ++ L  +L 
Sbjct: 180 FKDGDSNLSGEDVREGLTAIISIKHPNPQFEGQTKTKLGNSEARTITDSLFSEALEKFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV+K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL++
Sbjct: 240 ENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLRY 497
           F + K RY
Sbjct: 359 FTLEKARY 366


>gi|22761991|dbj|BAC11782.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 181/394 (45%), Positives = 254/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIISFKSMDEEMRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 ETGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS VR++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYVRALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|118139667|gb|ABK63286.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 357

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 205/359 (57%), Positives = 275/359 (76%), Gaps = 3/359 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + TGT + F PS++ 
Sbjct: 1   GVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSAET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV +L+R+K 
Sbjct: 60  FTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFRYEGGIKAFVGHLNRNKT 118

Query: 242 PLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G R ALTR +
Sbjct: 119 PIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFRGALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 179 NTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+
Sbjct: 239 GEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEK 298

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 299 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 357


>gi|22761975|dbj|BAC11774.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 254/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +      + SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPVISFKSMDEETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRETRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|261343280|gb|ACX70141.1| DNA gyrase subunit B [Nocardia ninae]
          Length = 408

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 175/411 (42%), Positives = 250/411 (60%), Gaps = 25/411 (6%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            ++Y VSGGLHGVG+SVVNALS  ++L I R+G  +  ++ +      L V G+    TG
Sbjct: 1   SETYAVSGGLHGVGLSVVNALSIRIELAIDRDGYHWTQNYQHAKP-EEL-VRGAPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK----------------- 213
              +F P  +IF    FN+ T+  R++E++FLN  + I L D+                 
Sbjct: 59  NTTSFWPDPEIFETTTFNFQTVARRMQEMAFLNQGLTIVLTDERASAADEVDSEIAEAPK 118

Query: 214 -----RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                 + + +  T  Y GG+  FV +L+R K+P+  S +   G      +++AM+WN G
Sbjct: 119 GAEEAPAEQLKTRTYHYPGGLADFVRHLNRTKQPIHNSVVGFLGKGSGHELEVAMQWNAG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y       K+   ++ GDD REG  +
Sbjct: 179 YSESVHSFANTINTHEGGTHEEGFRAALTTVVNKYARDKRLLKEKDGNLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  
Sbjct: 239 IVSLKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTYWFEANPADAKTIVSKAISSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   D+  LPGKLADC  +DP +SE+++VEGDSAGGSAK GR    Q
Sbjct: 299 RTAARKARELVRRKSANDLGGLPGKLADCRSKDPSRSEIYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 408


>gi|212659872|gb|ACJ37001.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|212659881|gb|ACJ37005.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 267

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 141/266 (53%), Positives = 185/266 (69%), Gaps = 2/266 (0%)

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 2   ADSILVKIHIDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYKVSGGL 61

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I R+G  Y+  ++ G    PL          GT + F P+ +
Sbjct: 62  HGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL-EVSAKRGTTLRFKPAKE 120

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R     Y+GGI +FV +L + K
Sbjct: 121 IFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVEHLAQLK 179

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL  + I + G  + I +D A++W D Y E + CFTNNIPQKDGGTHL+G R+ALTR +
Sbjct: 180 TPLHPNVISVTGEHNGIVVDAALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALTRTL 239

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGF 326
            +Y+E++  +++ K +  GDD REG 
Sbjct: 240 GNYIEQNGVARQAKITFSGDDMREGM 265


>gi|188529747|gb|ACD62560.1| GyrB [Micromonospora sp. 9]
          Length = 393

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 177/397 (44%), Positives = 254/397 (63%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K Y VSGGLHGVGVSVVNALS+ + + I + G ++   + +      L   G   + TG
Sbjct: 1   GKVYAVSGGLHGVGVSVVNALSTKMAVVIHKSGFVWRQQYTHSKPSA-LEK-GETTDRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V+F P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSFWPDPDVFETIDFDFQTIYRRLQEMAFLYRGITIHLLDERVPEDEDGKTREVTFRY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI  FV +L+  K P+ ++ +  +   + +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 DGGIADFVRHLNASKNPMHKTVVEFEAEEEGMSLEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RS LT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSTLTSVVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+S V+   ND L  W + +  EAK I++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKSFVQRVCNDRLVDWFDRNTAEAKTIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FD+ KLRYHK+++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDMEKLRYHKVVL 393


>gi|82409024|gb|ABB73294.1| gyrase beta subunit [Salinispora tropica]
          Length = 388

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 180/392 (45%), Positives = 255/392 (65%), Gaps = 9/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLH VGVSVVNALS+ + + I+++G ++  S+ +     PL   G + + TG+ V+F
Sbjct: 1   VSGGLHRVGVSVVNALSTRMAVEIQKDGYLWRQSYTDSKP-TPLEK-GESTDATGSAVSF 58

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIE 230
            P   +F    F++ T+  RL+E++FLN  + I  +D+R  E      RE+T  Y+GGI 
Sbjct: 59  WPDPRVFETVAFDFQTIYRRLQEMAFLNRGLTIHFLDERVDEGDDGKMREVTFCYQGGIA 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +L+  K  + +S +      D +S+++AM+WN+ Y E+V  F NNI   +GGTH  
Sbjct: 119 DFVRHLNASKTSIHKSVVEFGTEEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEE 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALT  I  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++
Sbjct: 179 GFRSALTSVINRYGA-EKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNT 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            V+S V+   N+ L  WL+ +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+
Sbjct: 238 PVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSM 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC   DP++ E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L 
Sbjct: 298 PGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 NNEVQALITALGTGI-HDDFDIEKLRYHKIVL 388


>gi|22761979|dbj|BAC11776.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 253/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPVISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|290995679|ref|XP_002680410.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284094031|gb|EFC47666.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1135

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 147/696 (21%), Positives = 265/696 (38%), Gaps = 66/696 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT---------------------DGESGLHHMIYEVLD 50
               Q    ++ V +RP  Y+G T                     D    L+ +I E+L 
Sbjct: 11  EQQYQKKTPIEHVLERPDTYVGSTERMKKKLFCLDSVNNIKLKEVDFIPALYRIIDEILV 70

Query: 51  NAIDESLEG--YADIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
           NA+D       + + + VT++       + +NG+ +P ++HK E I   E++   L  G 
Sbjct: 71  NAVDNHHRKGTHTNELRVTIDEAKNWIHIRNNGKSVPVEMHKIEKIYVPELVFGNLLTGS 130

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI-KREGNIYEMSFINGILD--NPLVVTGS 164
            F+    K +GG +G G  + N  S+   + I   +G  Y  ++   +     P +V   
Sbjct: 131 NFDDNEVKFTGGRNGYGAKLANIFSTDFTIEIMDHKGTHYIQNWKKNMSQISTPTIVENK 190

Query: 165 AGNDTGTEVTFLPSSDIFSVQD-----FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
              +   +V+F P    F            D L+ R+ +LS  N  + + L DK+     
Sbjct: 191 QKTEPYIQVSFHPDFKKFQSTGLNKELNMIDLLKRRIYDLSACNPKLNVYLNDKKVEVDN 250

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                          +   +        + +     +   ++A+  + G   N + F N+
Sbjct: 251 FKEYVK--------LFYQNNSSGEHPEKMFVHKHICD-GWEIAIGASVGEEFNQISFVNS 301

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I    GG+H++ + + L+ +I+ Y+ K       + ++     R   T  ++  + +P F
Sbjct: 302 IATVQGGSHVNFVLNQLSTKISEYIAK--TYTDLQLTISPYMVRNHITLFINSLIENPTF 359

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK-VLDASMVRDAARRARDL 398
            SQTKE L +  +    +  +++ L   +  H      I+       S       + R+ 
Sbjct: 360 DSQTKETLTTKSISFAQKVVISNDLINSIANHTPIIDNIIAFANYKQSSASSKKFKKRES 419

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPL 453
                 LD A+L G           +  L L EGDSA      G +  GR R    + PL
Sbjct: 420 KLLIPKLDDANLAG------TNRSMECVLILTEGDSAKALAISGLSVVGRDR--FGVFPL 471

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTG--IGQDSFD--INKLRYHKIIIMTDADVD 509
           +GK+LNV  A  D++  +QEI  L   LG       DSF+    +LRY K+++M D D D
Sbjct: 472 KGKLLNVREASADQIRDNQEIQNLKKILGLDDVSKTDSFEELTKRLRYGKVMLMCDQDHD 531

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G+HI+ LLL       P L+ N F+     P+  +++G  ++        +++      +
Sbjct: 532 GSHIKGLLLNMIHFFYPELLRNNFVDEFITPIIKVSKGSDVKSFFSIPEFQNWWTKVPEN 591

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
           E+          +  N  +   D    + + +     + D     +   S          
Sbjct: 592 EKNRWNQKYYKGLGTNSSKEAKDYFSNLKRHVIALQYDDDSEPNIELAFSKDL-----AN 646

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
              S  + L +         + +    INN  IL  
Sbjct: 647 ARKSWVASLKDGTFLDTTNGKVTITDFINNELILFS 682


>gi|22761965|dbj|BAC11769.1| gyrase B [Helicobacter pylori]
 gi|22761985|dbj|BAC11779.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 253/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSTKKELLTPVISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|22761961|dbj|BAC11767.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 253/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|22761963|dbj|BAC11768.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 253/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPVISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSYLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|22761997|dbj|BAC11785.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 179/394 (45%), Positives = 252/394 (63%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    +   FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQEIYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|188529797|gb|ACD62584.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 179/397 (45%), Positives = 257/397 (64%), Gaps = 9/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   +  G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKP-TPLEK-GEETDRAG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFY 225
           + V++ P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y
Sbjct: 59  SAVSYWPDPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI  FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +G
Sbjct: 119 EGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK 
Sbjct: 179 GTHEEGFRAALTSVVNRYGADKK-LLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKT 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++ V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L
Sbjct: 238 KLGNTPVKGSVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLL 297

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           +  S+PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR 
Sbjct: 298 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 357

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           D++L + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 DRVLKNNEVQALITALGTGI-HDDFDIEKLRYHKIVL 393


>gi|22761977|dbj|BAC11775.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 181/394 (45%), Positives = 253/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L V G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEVIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTSIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPVISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|32478664|gb|AAP83584.1| DNA-topoisomerase II [Physarum polycephalum]
          Length = 1498

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 130/633 (20%), Positives = 226/633 (35%), Gaps = 79/633 (12%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT------------DGES----------GLHHMIYEVL 49
            +  Q    ++ +  RP  YIG                            GL+ +  E+L
Sbjct: 320 EEMYQKKTPVEHILLRPDSYIGSIQHTHQEQWVINESDGRMEYRECKYVPGLYKIFDEIL 379

Query: 50  DNAIDESLEGY-ADIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D     +  +++ VT++  +   ++ +NG+GIP  LH++E +   E+++  L  G 
Sbjct: 380 VNAADNKQRDHKMNVLQVTIDPANNIISILNNGKGIPVQLHEKEKVYVPELVLGTLLTGS 439

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI---KREGNIYEMSFINGILDNPLVVTGS 164
            F+ K  KV+GG +G G  + N  S+  ++      R   +Y  S+   +          
Sbjct: 440 NFDDKIAKVTGGRNGFGAKLTNIFSTSFEVETADAARH-KLYRQSWSENMSQRTEPSIEH 498

Query: 165 AGNDTG---TEVTFLPSSDIFSV----QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
                G   T +TF P    F++           ++ R+ +++    SVQ+SL     P 
Sbjct: 499 YSGPKGSDYTRITFSPDLAKFNMQSLENGDILRLMKRRIYDMAACLPSVQVSLNGIPIPS 558

Query: 218 PREITMFYKGGIEAFVSYLDRH---------------------KKPLMQSPIRIQGSRDN 256
             +  +      +A                              K   + P       D 
Sbjct: 559 GFDAYVSMYQPKDAQPLSNAEDGAQNEQEEHGEGAEGTEGEQPGKQPTKHPFVYAKINDR 618

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             + + +   +G    V  F N+I    GGTH++ +   + + I   + K          
Sbjct: 619 WQVAVGLTMLEGQFSQV-SFVNSIATSKGGTHVNHVAEQVVKAIHERITKK----YPDLD 673

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
                 R      ++  + +P F SQTK+ L +          + D     +        
Sbjct: 674 TRPAHIRNNLFVFVNCLIENPAFDSQTKDTLTTRPAHFGSACDLPDSFLKRIVAQVPIID 733

Query: 377 IIVKKVLDASMVRDAARRARDLTRR-----KGVLDIASLPGKLADCSERDPKKSELFLVE 431
            +V       M        R    +        LD A+  G           +  L + E
Sbjct: 734 KVVGWAKLKQMAEFEKSSTRKPKDKAGIKAIPKLDDANFAGGP------RSSECTLIITE 787

Query: 432 GDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           GDSA   A  G S   R+   + PLRGK+LNV      +++ ++E+  L   LG   G++
Sbjct: 788 GDSAKSLAVSGLSIVGRDKYGVFPLRGKLLNVRDQSPKRVMENEELKHLRMILGLTPGKE 847

Query: 489 SFDINK---LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN-GFLYIIKPPLYGI 544
                    LRY K+++MTD D DG+HI+ L + F  +  PSL+   GFL     P+   
Sbjct: 848 YRTAEDRAELRYGKVMLMTDQDHDGSHIKGLFVNFMIQFWPSLLEQDGFLEQFITPIVKA 907

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
             G  +Q        E +       +  +    
Sbjct: 908 FHGAEVQTFYTTSEYEIWRSQLPDDQLSKWRIK 940


>gi|197295756|gb|ACH58589.1| gyrase subunit B [Methylobacterium aerolatum]
          Length = 355

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 215/355 (60%), Positives = 272/355 (76%), Gaps = 2/355 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS WL+LRI R    + M F +G    PL V G      GTEVTFLPS
Sbjct: 1   GLHGVGVSVVNALSQWLRLRIWRNDQEHSMEFRHGDAVAPLKVVGPGEGKRGTEVTFLPS 60

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +D F++ +F+Y TL+ RLREL+FLNS V+I L D R  E +   ++Y GGIEAFV YLDR
Sbjct: 61  TDTFTMIEFDYPTLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYDGGIEAFVRYLDR 120

Query: 239 HKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            KKP+  + +P+ ++  RD I ++ A  WND ++E VL FTNNIPQ+DGGTH++G R+AL
Sbjct: 121 SKKPMDGLTAPVVVRAERDGIRVECAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TRQIT Y + S  +KK+K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  V
Sbjct: 181 TRQITGYADSSGITKKEKISLTGEDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPAV 240

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ +N+GLS WLEE+P +A++++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLAD
Sbjct: 241 ENVLNEGLSTWLEENPQQARVVMSKVVLAASAREAARKARETVTRKGALDIASLPGKLAD 300

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           C ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS
Sbjct: 301 CQERDPSKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADRMLSS 355


>gi|22761983|dbj|BAC11778.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 179/394 (45%), Positives = 252/394 (63%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISDLEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    +   FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQEIYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|10281020|dbj|BAB13751.1| type II DNA topoisomerase [Candida dubliniensis]
          Length = 782

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 141/662 (21%), Positives = 250/662 (37%), Gaps = 34/662 (5%)

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D  +       I V ++  +    V ++G+GIP ++H +E +   E
Sbjct: 14  GLYKIFDEILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPVEMHTKENMYIPE 73

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFINGI 154
           +I   L     ++    KV+GG +G G  + N  S+  ++    +   G +Y+ S+ N +
Sbjct: 74  LIFGNLLTSSNYDDNEKKVTGGRNGFGAKLCNIFSTQFEVETA-DLNMGKLYKQSWTNNM 132

Query: 155 L-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISL 210
              +   +T        T++TF P    F +   + D    L+ R+ +L     +  I L
Sbjct: 133 SNVSKPKITTLKTKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNCNIYL 192

Query: 211 IDKRSPEPREITM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
            +KR       +            S     +   +++   I     N   ++A   +DG 
Sbjct: 193 NEKRLNISSFKSYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFNDRWEVAFAVSDGS 252

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
              V  F N+I    GGTH+  +   +  ++   + K    KK    +   + R+     
Sbjct: 253 FNQV-SFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKGKKK-LMIKPQEVRDNMFLF 310

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           ++  + +P F+SQTKE+L +   +       +  ++     + +    IV+K+   +   
Sbjct: 311 INCLIENPAFTSQTKEQLTTKVSQF---GGKDKFVANDNLINRILKTSIVEKIRAIANAN 367

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RE 446
           +     +    RK  +              +D     L L EG SA   A  G S   R+
Sbjct: 368 EDKALQKADGSRKSRIKGQVNLVDANRAGTKDGHNCTLILTEGLSAMNLAVAGLSVVGRD 427

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMT 504
                PLRGK+LNV  A  D++  + EI +L   +G    +     +I  LRY  I+IMT
Sbjct: 428 YYGCFPLRGKLLNVREASADQIAKNAEINSLKQIIGLQHKKVYTAENIKSLRYGHIMIMT 487

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRG------KSLQYVKDEE 557
           D D DG+HI+ L++ F     P L+   GFL     P+  +T        K +       
Sbjct: 488 DQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVRARGAGGKRVIPFYTMP 547

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
             E +        E +    ++           ++       L +     H     ++  
Sbjct: 548 EFEHWR-----DTEGKQCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHALQGEDKNY 602

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
           I   F+ +   E             +   E +E      IN   IL            VL
Sbjct: 603 IDLAFSKKKADER-KEWLQGFLPGTHLDPEITEIPISDFINKELILFSMSDNVRSIPSVL 661

Query: 678 EG 679
           +G
Sbjct: 662 DG 663


>gi|22761989|dbj|BAC11781.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 253/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +      + SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPVISFKSMDEETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++ +   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDTN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|296051279|gb|ADG86636.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051283|gb|ADG86638.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051285|gb|ADG86639.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 421

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 182/424 (42%), Positives = 253/424 (59%), Gaps = 38/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I  +G  +  +F +   D   +V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGFHWSETFTDSKPDG--LVKGEPTRKTG 58

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T V F P + IF+    FN +T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  TTVRFWPDASIFTETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNGEGE 118

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                +P+  T  Y  G+  ++ +L+R K P+ +S I   G   
Sbjct: 119 EGTTETAEEIKSDEEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGT 178

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY E+V  F N I   +GGTH  G R+ALTR + SY  +    K+   
Sbjct: 179 GHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKEKDD 238

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V     + +  W E +P EA
Sbjct: 239 NLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANPAEA 298

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KII+ K ++++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E++LVEGDSA
Sbjct: 299 KIIINKAVESAHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEGDSA 358

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD++KL
Sbjct: 359 GGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDLSKL 417

Query: 496 RYHK 499
           RYHK
Sbjct: 418 RYHK 421


>gi|254055387|gb|ACT64293.1| GryB [Pseudomonas chlororaphis]
 gi|254055389|gb|ACT64294.1| GryB [Pseudomonas chlororaphis]
 gi|254055391|gb|ACT64295.1| GryB [Pseudomonas chlororaphis]
 gi|254055393|gb|ACT64296.1| GryB [Pseudomonas chlororaphis]
 gi|254055395|gb|ACT64297.1| GryB [Pseudomonas chlororaphis]
 gi|254055397|gb|ACT64298.1| GryB [Pseudomonas sp. C1Phz26]
          Length = 362

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 207/365 (56%), Positives = 274/365 (75%), Gaps = 3/365 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++EN+ CFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNVQREDGIGVEIALQWNDSFNENLQCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 NYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P EAK++V K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+D
Sbjct: 238 KYFSDFLLENPNEAKLVVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL
Sbjct: 298 PALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 357

Query: 482 GTGIG 486
           G GIG
Sbjct: 358 GCGIG 362


>gi|37724717|gb|AAO26626.1| DNA gyrase [Bisgaard Taxon 37]
          Length = 389

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 190/394 (48%), Positives = 255/394 (64%), Gaps = 13/394 (3%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  S+KVSGGLHGVGVSVVNALSS   LRI+R+G ++E ++ NG+   PL VTG   +
Sbjct: 1   KFDDNSHKVSGGLHGVGVSVVNALSSKPLLRIRRDGKVHEQTYHNGVPQAPLTVTG-TTD 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F    + +YD L +RLRELSFLNS+V+I L D+R  + R     Y 
Sbjct: 60  KTGTMVRFWPSHETFKNVTEVSYDILCNRLRELSFLNSNVRIELKDER--DGRHDEFHYA 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQ--GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           GG++ FV +L+ +K  + + P   Q       I + L  +W D Y E+V CFTNNIPQ+D
Sbjct: 118 GGLQEFVKFLNTNKTVINEEPFYFQSVNEELGIPLKLQWQWTDTYKESVHCFTNNIPQRD 177

Query: 285 GGTHLSGLRSALTRQITSYVEKS-----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           G THL+  ++ALTR +  Y+E+               + GDD REG  +++S+K+P+P+F
Sbjct: 178 GCTHLNCFKAALTRSLKGYIEREVIANAKSKAFIDLKIDGDDSREGLVAIISVKVPNPKF 237

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEVR VVES +ND     LEE+P  A+ IV KV   S  R      R   
Sbjct: 238 SSQTKDKLVSSEVRGVVESTINDKFQTILEENPKIARTIVDKV--ISAARTREAARRARE 295

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
             +          KL  C+ R+P++ E++LVEGDSAGGSA +  + ++QAILPL+GKILN
Sbjct: 296 LARTNKKHTFTTNKLVHCNSRNPEECEVYLVEGDSAGGSALKLVTCKSQAILPLKGKILN 355

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           V +ARFDKMLSSQE+ TLITALG GIG+D ++ +
Sbjct: 356 VXKARFDKMLSSQEVATLITALGCGIGRDEYNPD 389


>gi|22761971|dbj|BAC11772.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 252/394 (63%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI    L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPIGELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|67538472|ref|XP_663010.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|40743376|gb|EAA62566.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|259485149|tpe|CBF81963.1| TPA: DNA topoisomerase 2 (EC 5.99.1.3)
           [Source:UniProtKB/TrEMBL;Acc:O59864] [Aspergillus
           nidulans FGSC A4]
          Length = 1709

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 135/663 (20%), Positives = 257/663 (38%), Gaps = 52/663 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +   Q L   + +  RP  YIG  +  +                      GL+ +  E++
Sbjct: 117 SSKYQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIV 176

Query: 50  DNAIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D        D I VT + +    +V +NG+GIP ++H+E G+   ++I   L    
Sbjct: 177 VNAADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMHEEHGMYIPQLIFGNLLTSS 236

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSA 165
            ++    K++GG +G G  + N  S+   +  +  ++   Y  ++ + +         +A
Sbjct: 237 NYDDAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQKKRYLQTWTDNMQTVGKPKITAA 296

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                T VTF      F +   + D    ++ R+ +L+   + V + L   R P      
Sbjct: 297 KGSDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLAGT-TGVTVKLNGTRLPVRNFKK 355

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                 +E +   + R +         I     +   ++    +DG  + V  F N+I  
Sbjct: 356 Y-----MEMYTKAIRRERGDDDSKSDPIITCSPHPYWEIGFAVSDGSFKQV-SFVNSIAT 409

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++ +   +  +++  ++K+   K     +     R      ++ K+ +P FSSQ
Sbjct: 410 TSGGTHVNYIADQIAGKLSESLKKNK--KGTGSILKPAQIRNYCFLFVNAKIVNPAFSSQ 467

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE+L + +       F +  +        +    ++  +   +  +      +    R+
Sbjct: 468 TKEQLTTKQT-----QFGSKPILDESFLKKVANSGVLDSLKRFADHKADLMLKKSDGGRR 522

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR---ENQAILPLRGKILN 459
             ++             +D  K  L L EG+SA G A  GR+    +   + PLRGK+LN
Sbjct: 523 SRMNNP-KLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLN 581

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A FD++  ++EI ++   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ 
Sbjct: 582 VRDASFDQISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLIN 641

Query: 520 FFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           F   Q PSL+      I    P+  + +G     +KD      +   Q  +   E     
Sbjct: 642 FLEAQFPSLLKIPEFLIEFITPIVKVWKGD----IKDPTKQHSFFTIQEYNAWKEKHGHE 697

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           +G   K           +  +  +D   +  +  + Q     +      ++        L
Sbjct: 698 RGWEHKYYKGLGTSSTEEAQEYFRDLDRHLKEFHVMQDKEHELIELAFSKKKVEERKEWL 757

Query: 639 ANR 641
              
Sbjct: 758 RQY 760


>gi|296051271|gb|ADG86632.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 421

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 182/424 (42%), Positives = 252/424 (59%), Gaps = 38/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I  +G  +  +F +   D   +V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGFHWSETFTDSKPDG--LVKGEPTRKTG 58

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T V F P + IF+    FN +T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  TTVRFWPDASIFTETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNGEGE 118

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                +P+  T  Y  G+  ++ +L+R K P+ +S I   G   
Sbjct: 119 EGTTETAEEIKSDKEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGT 178

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY E+V  F N I   +GGTH  G R+ALTR + SY  +    K+   
Sbjct: 179 GHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKEKDD 238

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V     + +  W E +P EA
Sbjct: 239 NLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANPAEA 298

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KII+ K ++++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E++LVEGDSA
Sbjct: 299 KIIINKAVESAHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEGDSA 358

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KL
Sbjct: 359 GGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDLAKL 417

Query: 496 RYHK 499
           RYHK
Sbjct: 418 RYHK 421


>gi|55773630|dbj|BAA28664.2| typeII DNA topoisomerase [Emericella nidulans]
          Length = 1709

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 135/663 (20%), Positives = 257/663 (38%), Gaps = 52/663 (7%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +   Q L   + +  RP  YIG  +  +                      GL+ +  E++
Sbjct: 117 SSKYQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIV 176

Query: 50  DNAIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D        D I VT + +    +V +NG+GIP ++H+E G+   ++I   L    
Sbjct: 177 VNAADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMHEEHGMYIPQLIFGNLLTSS 236

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSA 165
            ++    K++GG +G G  + N  S+   +  +  ++   Y  ++ + +         +A
Sbjct: 237 NYDDAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQKKRYLQTWTDNMQTVGKPKITAA 296

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                T VTF      F +   + D    ++ R+ +L+   + V + L   R P      
Sbjct: 297 KGSDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLAGT-TGVTVKLNGTRLPVRNFKK 355

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                 +E +   + R +         I     +   ++    +DG  + V  F N+I  
Sbjct: 356 Y-----MEMYTKAIRRERGDDDSKSDPIITCSPHPYWEIGFAVSDGSFKQV-SFVNSIAT 409

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++ +   +  +++  ++K+   K     +     R      ++ K+ +P FSSQ
Sbjct: 410 TSGGTHVNYIADQIAGKLSESLKKNK--KGTGSILKPAQIRNYCFLFVNAKIVNPAFSSQ 467

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE+L + +       F +  +        +    ++  +   +  +      +    R+
Sbjct: 468 TKEQLTTKQT-----QFGSKPILDESFLKKVANSGVLDSLKRFADHKADLMLKKSDGGRR 522

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR---ENQAILPLRGKILN 459
             ++             +D  K  L L EG+SA G A  GR+    +   + PLRGK+LN
Sbjct: 523 SRMNNP-KLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLN 581

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A FD++  ++EI ++   +G    ++  D   LRY  ++IMTD D DG+HI+ LL+ 
Sbjct: 582 VRDASFDQISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLIN 641

Query: 520 FFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           F   Q PSL+      I    P+  + +G     +KD      +   Q  +   E     
Sbjct: 642 FLEAQFPSLLKIPEFLIEFITPIVKVWKGD----IKDPTKQHSFFTIQEYNAWKEKHGHE 697

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638
           +G   K           +  +  +D   +  +  + Q     +      ++        L
Sbjct: 698 RGWEHKYYKGLGTSSTEEAQEYFRDLDRHLKEFHVMQDKEHELIELAFSKKKVEERKEWL 757

Query: 639 ANR 641
              
Sbjct: 758 RQY 760


>gi|82409014|gb|ABB73289.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409016|gb|ABB73290.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409018|gb|ABB73291.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409020|gb|ABB73292.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409032|gb|ABB73298.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409034|gb|ABB73299.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409036|gb|ABB73300.1| gyrase beta subunit [Salinispora arenicola]
 gi|82547020|gb|ABB82298.1| gyrase [Salinispora arenicola]
          Length = 388

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 181/392 (46%), Positives = 256/392 (65%), Gaps = 9/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLH VGVSVVNALS+ + + I+++G  +  S+ +    +PL   G   + TG+ V+F
Sbjct: 1   VSGGLHRVGVSVVNALSTRMAVEIQKDGYFWRQSYTDSKP-SPLEK-GEPTDATGSAVSF 58

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIE 230
            P   +F   DF++ T+  RL+E++FLN  + I  +D+R       + RE+T  YKGGI 
Sbjct: 59  WPDPAVFETVDFDFQTIYRRLQEMAFLNRGLTIHFLDERVAADEDGKMREVTFCYKGGIA 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +L+  K P+ +S +      D +S+++AM+WN+ Y E+V  F NNI   +GGTH  
Sbjct: 119 DFVRHLNASKTPIHKSVVEFGTEEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEE 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  I  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++
Sbjct: 179 GFRAALTSVINRYGTD-KRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNT 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            V+S V+   N+ L  WL+ +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+
Sbjct: 238 PVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSM 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC   DP++ E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L 
Sbjct: 298 PGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 NNEVQALITALGTGI-HDDFDIEKLRYHKIVL 388


>gi|22761959|dbj|BAC11766.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 181/394 (45%), Positives = 254/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +      + SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPVISFKSMDEETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++ +   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDTN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS VR++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYVRALVSKLVYDKIYQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|170592146|ref|XP_001900830.1| Probable DNA topoisomerase II [Brugia malayi]
 gi|158591697|gb|EDP30301.1| Probable DNA topoisomerase II, putative [Brugia malayi]
          Length = 1570

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 141/747 (18%), Positives = 269/747 (36%), Gaps = 78/747 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDT-----------------------DGESGLHHMIYEVLDN 51
            Q    L+ +  RP  YIG                             GL+ +  E+L N
Sbjct: 81  YQKKSQLEHILLRPDTYIGSVERTDKAPLWVYDMETERIIQRDISYVPGLYKIFDEILVN 140

Query: 52  AIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
           A D        ++I + +N +    +V +NG+GIP  LHK E +   E+I   L     +
Sbjct: 141 AADNKQRDSKMNLIKININKETNEISVFNNGKGIPVVLHKVEQLYVPELIFGTLLTSSNY 200

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           +    KV+GG +G G  + N  S    +    K  G  ++ ++ N +  +       +  
Sbjct: 201 DDSERKVTGGRNGYGAKLCNIFSREFTVETSSKEYGKAFKQTWKNNMTKDKDPFVSKSSG 260

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           +  T VTF P    F + + + D    +  R  +++     V++ L  K         + 
Sbjct: 261 EDFTRVTFKPDLAKFRMTELDDDIISLISRRAYDVAGSTKGVKVYLNGK---------LL 311

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
              G + +V    +H       P ++   + N   ++A+  ++   + V  F N+I    
Sbjct: 312 PVQGFKQYVDQYAKHNLDNDGEPYKVVYEQVNERWEVALTVSEKGFQQV-SFVNSIATTK 370

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H+  +   +T ++   ++K     K   +V     +      ++  + +P F SQTK
Sbjct: 371 GGRHVDYVADQITAKLIDTIKKK--VGKSGVNVKPFQIKSHMWIFVNSLVENPTFDSQTK 428

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E +         +  +++     + +       IV+ VL     +      +  + +K  
Sbjct: 429 ETMTLQAKSFGSKCELSERFINAVMKCG-----IVEAVLAWVRFKQQETLDKKCSSKKTS 483

Query: 405 LDIASLP-GKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKIL 458
                       D   ++     L L EGDSA      G    GR R    + PLRGK+L
Sbjct: 484 KLKGIPKLEDANDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRDR--YGVFPLRGKML 541

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL---RYHKIIIMTDADVDGAHIRT 515
           NV      +++ + EI +LI  +G            +   RY KI++M D D DG+HI+ 
Sbjct: 542 NVREGSHKQIMENAEINSLIKIIGLQYRLKYDKDEDMRTLRYGKIMVMADQDQDGSHIKG 601

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIEL 574
           L++ F     P LI   F+     P+   T+GK            ++  N ++       
Sbjct: 602 LVINFIHYNWPVLIRRNFVEEFITPIVKATKGKESLSFFSLPEYAEWRNNTENWKTYRIK 661

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  +  + + +  D ++     +      D +                      +
Sbjct: 662 YYKGLGTSTSKEAKEYFTDMIRHRIRFQYSGEEDDSSL-------------DMAFSKKKI 708

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
             +     N++AEK  +   G       L  +  R V  +  +    +    +  +R   
Sbjct: 709 EDRKVWLTNWMAEKKTRREQGLTEEY--LYDKDTRAVSFKDFVNKELVLFSNADNERSIP 766

Query: 695 NRIEENYLTILSLI----CNGDKIKIT 717
           + ++        ++       DK ++ 
Sbjct: 767 SLVDGLKPGQRKVLFTCFKRADKKEVK 793


>gi|296051263|gb|ADG86628.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051265|gb|ADG86629.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051267|gb|ADG86630.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051269|gb|ADG86631.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051275|gb|ADG86634.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051277|gb|ADG86635.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051281|gb|ADG86637.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 421

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 182/424 (42%), Positives = 252/424 (59%), Gaps = 38/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I  +G  +  +F +   D   +V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGFHWSETFTDSKPDG--LVKGEPTRKTG 58

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T V F P + IF+    FN +T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  TTVRFWPDASIFTETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNGEGE 118

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                +P+  T  Y  G+  ++ +L+R K P+ +S I   G   
Sbjct: 119 EGTTETAEEIKSDEEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGT 178

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY E+V  F N I   +GGTH  G R+ALTR + SY  +    K+   
Sbjct: 179 GHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKEKDD 238

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V     + +  W E +P EA
Sbjct: 239 NLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANPAEA 298

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KII+ K ++++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E++LVEGDSA
Sbjct: 299 KIIINKAVESAHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEGDSA 358

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KL
Sbjct: 359 GGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDLAKL 417

Query: 496 RYHK 499
           RYHK
Sbjct: 418 RYHK 421


>gi|22761967|dbj|BAC11770.1| gyrase B [Helicobacter pylori]
 gi|22761987|dbj|BAC11780.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 182/394 (46%), Positives = 254/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--D 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L V G   N  +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEVIGKTKNAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTAIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPVISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++++   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDEN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|22761981|dbj|BAC11777.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 182/394 (46%), Positives = 255/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--D 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G   N  +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKNAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +      + SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIISFKSMDEETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++ +   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDTN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS VR++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYVRALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|22761969|dbj|BAC11771.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 181/394 (45%), Positives = 253/394 (64%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++ +   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDTN--IKTREFRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS VR++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYVRALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|308153110|dbj|BAJ22144.1| DNA gyrase subunit B [Corynebacterium xerosis]
          Length = 429

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 182/432 (42%), Positives = 255/432 (59%), Gaps = 43/432 (9%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ ++  I R+G+++  +F         +V G     +G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRVEAEIVRDGHVWFQNF--NTAVPEDLVQGKKARGSG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T + F P   IF   +FN+DT+  RLRE++FLN  + I+L+DKR  E             
Sbjct: 59  TTIRFWPDDSIFETVEFNFDTIARRLREMAFLNKGLTITLVDKRVSEEELEAEALAEQAE 118

Query: 223 --------------------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                             Y  G++ +V  L++ K  +  S I  
Sbjct: 119 KESAALVDEAEDAEGTTDVVEKAKKRREKKKVYHYPNGLQDYVDALNKSKNIIHPSIIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
           +   +   +++AM+WN+GY E+V  F N I   +GGTH  G RSALT  +  Y  +    
Sbjct: 179 EAGGEGHEVEIAMQWNNGYSESVHTFANTINTIEGGTHEEGFRSALTSLMNRYAREHKLL 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+ + ++ G+D REG  +V+S+++ DP+F  QTK KL ++E+R  V+   N+ +  W+E 
Sbjct: 239 KEKENNLTGEDAREGLAAVISVRVADPQFEGQTKTKLGNTEIRGFVQRMANEHIGHWMEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAK IV K + ++  R AAR+ARDL RRK   D+  LPGKLADC  +DP KSELF+V
Sbjct: 299 NPAEAKAIVNKAIASAHARQAARKARDLVRRKSATDLGGLPGKLADCRSKDPSKSELFIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAK GR+   QAILPLRGKILNVE++R D+ L + E+  +ITALGTGI  D F
Sbjct: 359 EGDSAGGSAKSGRNSMFQAILPLRGKILNVEKSRLDRTLKNNEVQAIITALGTGI-HDEF 417

Query: 491 DINKLRYHKIII 502
           DI KLRYHKI++
Sbjct: 418 DIAKLRYHKIVL 429


>gi|308153164|dbj|BAJ22171.1| DNA gyrase subunit B [Mycobacterium fortuitum]
 gi|308153166|dbj|BAJ22172.1| DNA gyrase subunit B [Mycobacterium fortuitum]
          Length = 419

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 180/421 (42%), Positives = 251/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I+ +G  +  ++   +    L   G    +TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIRTDGYEWFQTYERSVP-GTLKQ-GEKTKETGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    D+F    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDVFETTVYDFETIARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVSDHADA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K P+  S I   G      +++
Sbjct: 120 PKSAADEAAEAGAPVKVKHRVFHYPGGLVDFVKHINRTKSPIQPSVIDFDGKGPGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K    ++ G+D
Sbjct: 180 AMQWNGGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKEKKLLKDKDPNLTGED 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ +S WLE +P EAK +V K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQISHWLEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+ARDL RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARAAARKARDLVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|167598759|gb|ABZ88404.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598761|gb|ABZ88405.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598763|gb|ABZ88406.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598765|gb|ABZ88407.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598767|gb|ABZ88408.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598769|gb|ABZ88409.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598771|gb|ABZ88410.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598773|gb|ABZ88411.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598775|gb|ABZ88412.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598777|gb|ABZ88413.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598779|gb|ABZ88414.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598781|gb|ABZ88415.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598783|gb|ABZ88416.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598785|gb|ABZ88417.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598787|gb|ABZ88418.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598789|gb|ABZ88419.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598791|gb|ABZ88420.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598793|gb|ABZ88421.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598795|gb|ABZ88422.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598797|gb|ABZ88423.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598799|gb|ABZ88424.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598801|gb|ABZ88425.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598803|gb|ABZ88426.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598805|gb|ABZ88427.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598807|gb|ABZ88428.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598809|gb|ABZ88429.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598811|gb|ABZ88430.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598813|gb|ABZ88431.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598815|gb|ABZ88432.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598817|gb|ABZ88433.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598819|gb|ABZ88434.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598821|gb|ABZ88435.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598823|gb|ABZ88436.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598825|gb|ABZ88437.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598827|gb|ABZ88438.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598829|gb|ABZ88439.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598831|gb|ABZ88440.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598833|gb|ABZ88441.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598835|gb|ABZ88442.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598837|gb|ABZ88443.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598839|gb|ABZ88444.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598841|gb|ABZ88445.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598843|gb|ABZ88446.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598845|gb|ABZ88447.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598847|gb|ABZ88448.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598849|gb|ABZ88449.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598851|gb|ABZ88450.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598853|gb|ABZ88451.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598855|gb|ABZ88452.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598857|gb|ABZ88453.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|332800601|emb|CBY89790.1| GyrB protein [Flavobacterium psychrophilum]
          Length = 383

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 169/374 (45%), Positives = 236/374 (63%), Gaps = 7/374 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G      GT VTF P
Sbjct: 1   GLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIGETT-KRGTIVTFYP 59

Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAF 232
              IF+    ++YDTL  R+RELSFLN  + I+  DKR  +              G++ +
Sbjct: 60  DPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNFVSEIFHSTEGLKEY 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           + YLD +++P++   I +   +  I +++A+ +N  Y EN+  + NNI   +GGTHL G 
Sbjct: 120 IRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGF 179

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV
Sbjct: 180 RTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREV 239

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
            S V   V D +  +LEE+P +A+IIV+KV+ A+  R AA++AR++ +RK V+    LPG
Sbjct: 240 VSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPG 299

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL+DCSE+DP K E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++
Sbjct: 300 KLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENE 359

Query: 473 EIGTLITALGTGIG 486
           EI  + TALG  IG
Sbjct: 360 EIRNIFTALGVTIG 373


>gi|82409026|gb|ABB73295.1| gyrase beta subunit [Salinispora pacifica]
 gi|82409028|gb|ABB73296.1| gyrase beta subunit [Salinispora pacifica]
 gi|82409030|gb|ABB73297.1| gyrase beta subunit [Salinispora pacifica]
 gi|82409042|gb|ABB73303.1| gyrase beta subunit [Salinispora pacifica]
          Length = 388

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 180/392 (45%), Positives = 253/392 (64%), Gaps = 9/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLH VGVSVVNALS+ + + I+++G  +  S+ +     PL   G   + TG+ V+F
Sbjct: 1   VSGGLHRVGVSVVNALSTRMAVEIQKDGYFWRQSYTDSKP-TPLEK-GEPTDATGSAVSF 58

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIE 230
            P   +F    F++ T+  RL+E++FLN  + I  +D+R  E      RE+T  Y+GGI 
Sbjct: 59  WPDPTVFETVSFDFQTIYRRLQEMAFLNRGLTIHFLDERVDEGDDSKMREVTFCYQGGIA 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +L+  K  + +S +      D +S+++AM+WN+ Y E+V  F NNI   +GGTH  
Sbjct: 119 DFVRHLNASKTSIHKSVVEFGTEEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEE 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALT  I  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++
Sbjct: 179 GFRSALTSVINRYGA-EKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNT 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            V+S V+   N+ L  WL+ +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+
Sbjct: 238 PVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSM 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC   DP++ E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L 
Sbjct: 298 PGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 NNEVQALITALGTGI-HDDFDIEKLRYHKIVL 388


>gi|313217160|emb|CBY38323.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 131/701 (18%), Positives = 260/701 (37%), Gaps = 58/701 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
            ++ + +  L+ V  RP MY+G  +                          L+ +  E+L
Sbjct: 6   EETYKKVDSLEHVLLRPDMYVGSIEASKENMWVFDAESTQFVQKEIEFIPALYKIYDEIL 65

Query: 50  DNAIDESLEGYA-DIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +     +++ V ++  +   +V +NG+GIP ++HKE G+   E+I   +    
Sbjct: 66  VNAADNKVRDPNQNMVKVDIDTENNKISVLNNGKGIPIEIHKEHGVYVPELIFGHMMTSS 125

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSA 165
            +++   K +GG +G G  + N  S+   +    K+ G    +++   +      V  S 
Sbjct: 126 NYDESEKKTTGGRNGYGAKLCNIFSTEFTVETVNKKIGKRLTVTWTGNMKKKGNAVIKSY 185

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             D  T+++F P    F++   + D     + R  +++     V + L  +R    ++  
Sbjct: 186 SKDDYTKISFTPDLKRFNMTHLSNDMVSLFRKRAYDIAGTTPGVSVFLDGERIAFNKKDP 245

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                 +      LD  K+  +    + +        D+    +D   +N+  F N+I  
Sbjct: 246 FKDYCNMYTKGKILDTGKEVTL-IYEKPENKEAKGRWDVGFAISDNGFQNI-SFVNSINT 303

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG H++ +   L +++   V K     K    V     +      ++ ++ +P F SQ
Sbjct: 304 SKGGHHVNAISDQLVKRLEELVNKKN---KGGLGVKAHQIKSHCWIFVNSQIENPAFDSQ 360

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L   + +   +  ++D     +E+  +   I        +  +      +      
Sbjct: 361 TKETLTLVKSKHGSKPILSDAFIKKVEKSGIVETITNFMKFKENQAKGKIGGKKQKKVVI 420

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKI 457
             LD A   GK         K   L L EGDSA      G +     +    + PLRGK+
Sbjct: 421 LKLDDAPEAGKT------QSKDCTLILTEGDSAKTAALAGVSSMADLKRYYGVFPLRGKL 474

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIR 514
           LN   A   ++  ++EI  +I A+G    +   +      LRY +++IMTD DVDG+HI+
Sbjct: 475 LNAREAGHQQLTKNEEIKNIIQAMGFDFKRKYDNPEDLKSLRYGRLMIMTDQDVDGSHIK 534

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-------QYVKDEESLEDYLINQS 567
            L++ F     P++I    +     P+  I   K                    +     
Sbjct: 535 GLIINFLHHFWPNMIRGPTVQQFITPIVKIFLKKDENKQNCKKTNFYSLPEFNKWQREVP 594

Query: 568 -LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
            L      +    G     + + +  D  +     +   PN D+    +   +     + 
Sbjct: 595 NLDAYRVEYYKGLGTSGPEEFKEYFQDIQRHRIPFRYSGPNCDERI--KMAFARDLVDDR 652

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667
            + +    A +    L    + +  ++   I+   ++    
Sbjct: 653 KEWLTEFEAGEDELTLYDREQINYVTYKDFIDKELVIFSHE 693


>gi|190148876|gb|ACE63413.1| DNA gyrase B subunit [Pseudonocardia sp. S073]
          Length = 396

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 176/398 (44%), Positives = 248/398 (62%), Gaps = 18/398 (4%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ L + I  +G ++   +   +   PL   G     TG+ VT+
Sbjct: 2   VSGGLHGVGVSVVNALSTALDVEIHTDGFVWRQHYARSVP-GPLRK-GEPTKKTGSTVTY 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---------------RE 220
               DIF    +N +T++ RL+E++FLN  + I+L D+R+ +                +E
Sbjct: 60  WADGDIFETLTYNIETIRRRLQEMAFLNKGLTITLRDERNGDNGEAEEPDAEGYVAKVKE 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y  G+E FV++L++ K P+ +  +   G      +++AM+WN GY E+V  F N I
Sbjct: 120 YTFCYPNGLEDFVAHLNKSKDPIHKKLVSFTGEGTGHQVEVAMQWNSGYTESVYTFANTI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G RSALT  +  Y       K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 180 NTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKEPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P EA+ IV K + ++  R AAR+AR+L R
Sbjct: 240 GQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEARTIVNKAVQSAQARAAARKARELVR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI+NV
Sbjct: 300 RKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKIINV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           E+AR D++L + E+  +ITALGTGI  D FD+ KLRYH
Sbjct: 360 EKARIDRVLKNTEVQAIITALGTGI-HDEFDVAKLRYH 396


>gi|294790964|ref|ZP_06756122.1| DNA gyrase subunit B [Scardovia inopinata F0304]
 gi|294458861|gb|EFG27214.1| DNA gyrase subunit B [Scardovia inopinata F0304]
          Length = 772

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 105/248 (42%), Positives = 147/248 (59%), Gaps = 28/248 (11%)

Query: 1   MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    ++ +Y+A+S+ +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G
Sbjct: 1   MSAAKKKSEAYNANSLSVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
               I VTL+ DGS TV+DNGRGIP D+ ++ G+S  EV++T+LHAGGKF   +Y   GG
Sbjct: 60  ACSHIVVTLHKDGSITVADNGRGIPVDIEQKTGLSGVEVVLTKLHAGGKFGNSAYTAVGG 119

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------ 155
           LHGVG SVVNALSS L + + R G  Y M F  G                          
Sbjct: 120 LHGVGSSVVNALSSRLDVEVDRGGKTYRMEFHQGHPGVYDDPDPQNPSPDSPFARTRKGR 179

Query: 156 DNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDK 213
              L V G+ +G  TGT + +    +IF+    FNYD L  R+R+ SFL   ++I +ID+
Sbjct: 180 PTELRVVGTYSGKKTGTRIRYWADPEIFNSTARFNYDQLIDRVRQTSFLVPGLRIEVIDE 239

Query: 214 RSPEPREI 221
              E   +
Sbjct: 240 NISENTYV 247



 Score =  197 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 132/445 (29%), Positives = 215/445 (48%), Gaps = 34/445 (7%)

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN----------- 256
           +++     P PR    F++GG+  FV YL       + S   I+G               
Sbjct: 302 VAIESSTMPHPRVEEFFHEGGVVDFVDYLSHG--EPISSIWHIEGDNTYEEETQQVGPDG 359

Query: 257 ----------ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                       +D+A+RW + Y   +  F N +    GG H+ G  +++TR I   VE 
Sbjct: 360 DLHPAMVTRDCHVDIALRWINDYETVLRSFVNVVETPGGGMHVDGFLNSITRNIRRSVEA 419

Query: 307 SF-----GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +        K     +  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +
Sbjct: 420 NARKLKVNLKDSSMKIERDDVLAGIVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVAKMCD 479

Query: 362 DGLSAWLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           D     +       K     +++K+      R  AR+ +++TRRK  L+ AS+P KL+DC
Sbjct: 480 DQFGQMITGSKRGFKDQSARVLEKITGEMHARVQARKTKEVTRRKNALESASMPAKLSDC 539

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
              +   +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   ++L+++E   +
Sbjct: 540 QPGNDDIAELFIVEGDSALGTAKAARNSSFQALLPIRGKILNVQKASVAQILANKECSAI 599

Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           I  +G G G   FD+++ RY K+I+MTDADVDGAHIRTLLLT F+R M  L+  G +Y  
Sbjct: 600 IQVVGAGSGAT-FDLSQSRYDKVIMMTDADVDGAHIRTLLLTLFYRYMRPLVQAGHVYAA 658

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
            PPL+ I      +        E+  + + LS+           I +      +D     
Sbjct: 659 VPPLHRIALMGKHKGEYVYTYSEE-ELARKLSQLDRQEIRYDPDIQRYKGLGEMDADQLA 717

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVF 622
           D  +        +  +E A  +   
Sbjct: 718 DTTMDPRSRMLRRIRLEDAQKASEI 742



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGI----SMQRYKGLGEMNASQLWETTLNPDTRSLL 763
              G+ +       L   +  + R+ I     +QRYKGLGEM+A QL +TT++P +R L 
Sbjct: 670 KHKGEYVYTYSEEELARKLSQLDRQEIRYDPDIQRYKGLGEMDADQLADTTMDPRSRMLR 729

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+++ DA +A ++F  LMGDEV PRR+FI +N+
Sbjct: 730 RIRLEDAQKASEIFELLMGDEVPPRRQFIIDNA 762


>gi|62085686|gb|AAX63235.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 424

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 184/427 (43%), Positives = 252/427 (59%), Gaps = 38/427 (8%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++       PL   G A
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKP-GPLEK-GDA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V F P  DIF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDA 118

Query: 217 --------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 NGDEDAPATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 SAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKIIVKK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D F
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEF 417

Query: 491 DINKLRY 497
           DI KLRY
Sbjct: 418 DIAKLRY 424


>gi|294963344|gb|ADF50159.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 368

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 178/370 (48%), Positives = 258/370 (69%), Gaps = 3/370 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF     
Sbjct: 1   VNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + 
Sbjct: 60  YDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEE 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  +
Sbjct: 120 PIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARR 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  
Sbjct: 180 KGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALET 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SE
Sbjct: 240 FLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG
Sbjct: 300 LYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIG 359

Query: 487 QDSFDINKLR 496
           +D F++ K R
Sbjct: 360 ED-FNLEKAR 368


>gi|94541036|gb|ABF31188.1| DNA gyrase subunit B [Leptospira weilii serovar Topaz]
          Length = 158

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 82/159 (51%), Positives = 116/159 (72%), Gaps = 1/159 (0%)

Query: 8   SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +SY+A  I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I ++
Sbjct: 1   TSYNAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIRIS 59

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           +  +    V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSV
Sbjct: 60  ILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSV 119

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           VNALS +L++ + ++G IY   +  GI  +P+ + G + 
Sbjct: 120 VNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS 158


>gi|330896987|gb|AEC48375.1| gyrase B [Streptomyces phaeofaciens]
          Length = 398

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 174/396 (43%), Positives = 252/396 (63%), Gaps = 20/396 (5%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            Y VSGGLHGVGVSVVNALS+ + + ++ +G+ +   +  G+   PL     A ++ GT 
Sbjct: 1   GYAVSGGLHGVGVSVVNALSTKVAVEVRTDGHRWTQDYKLGVPTAPLAQ-HEATDEHGTS 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------P 216
           VTF    DIF   D++++TL  R +E++FLN  ++I+L D+R                  
Sbjct: 60  VTFWADPDIFETTDYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKH 119

Query: 217 EPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENV 273
           E + ++  Y+GGI  FV Y   R    +  + I ++    +  +S+++AM+WN GY E V
Sbjct: 120 EVKRVSYHYEGGIVDFVKYLNSRKGDLVHATVIDLEAEDKDKLLSLEVAMQWNSGYTEGV 179

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K
Sbjct: 180 YSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVK 239

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL ++EV++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR
Sbjct: 240 LSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLADWLDRNPNEAADIIRKGIQAATARVAAR 299

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+
Sbjct: 300 KARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPI 359

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           RGKILNVE+AR DK+L +QEI  LI+A GTG+ +D 
Sbjct: 360 RGKILNVEKARIDKILQNQEIQALISAFGTGVHEDF 395


>gi|116734644|gb|ABK20309.1| DNA gyrase B [Ferrimonas senticii]
          Length = 354

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 206/357 (57%), Positives = 273/357 (76%), Gaps = 4/357 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L ++R+G++YE +F++G     L V G   + TGT + F PS++
Sbjct: 1   HGVGVSVVNALSHKLELTVRRQGHVYEQTFVHGEPVEALKVIGDT-DKTGTIIRFWPSAE 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS   F+Y+ L  R+RELSFLNS V I L+D+R  +        +GGI+AFV YL+ +K
Sbjct: 60  TFSDTTFHYEILAKRVRELSFLNSGVSIRLVDERDGKESHYCY--EGGIKAFVDYLNTNK 117

Query: 241 KPLMQSPIRIQGSRDNI-SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ Q        R++  ++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR 
Sbjct: 118 TPINQQAFYFNSEREDGLAVEVAMQWNDGFSENIYCFTNNIPQRDGGTHLAGFRSALTRT 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 LNTYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           + + LS +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 238 MGEKLSEYLLEHPAEAKQVVTKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           +DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 298 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 354


>gi|46191321|ref|ZP_00206767.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bifidobacterium longum DJO10A]
 gi|189439161|ref|YP_001954242.1| DNA topoisomerase plasmid partition protein B [Bifidobacterium
           longum DJO10A]
 gi|189427596|gb|ACD97744.1| DNA topoisomerase plasmid partition protein B [Bifidobacterium
           longum DJO10A]
          Length = 758

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 27/239 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPE 238



 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 293 EQPAHPRVVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGKGGELHAQ 350

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GGTH+ G  +A+T+QI   VE +    
Sbjct: 351 EIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKL 410

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 411 KVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 470

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 471 MITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 530

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 531 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 590

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 591 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 649

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 650 RIALTGSHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGE-MDADQLADTTMD 708

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 709 PRTRMLRRIRMEDAAQASEI 728



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 657 HKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 716

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR++FI +N+
Sbjct: 717 IRMEDAAQASEIFSLLMGDDVPPRKQFIVDNA 748


>gi|308153152|dbj|BAJ22165.1| DNA gyrase subunit B [Mycobacterium peregrinum]
          Length = 419

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 179/421 (42%), Positives = 249/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I ++G  +  ++ N +    L         TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIYKDGYEWFQTYDNSVP-GTLKQG-DKTTKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    ++F    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPNVFETTVYDFETIARRLQEMAFLNKGLTIELTDERVSREEVVDEVVADTAAA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+  FV +++R K  +  S I   G      +++
Sbjct: 120 PKSAEETAAEAAAPHKVKHRTFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGPGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTTVVNKYAKDKKLLKDKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVAQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|308152509|dbj|BAJ22233.1| DNA gyrase subunit B [Mycobacterium porcinum]
          Length = 419

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 179/421 (42%), Positives = 249/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I ++G  +  ++ N +    L         TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIYKDGYEWFQTYDNSVP-GTLKQG-DKTTKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    ++F    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPNVFETTVYDFETIARRLQEMAFLNKGLTIELTDERVTQDEVVDEVVADTAAA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+  FV +++R K  +  S I   G      +++
Sbjct: 120 PKTAEETAAEASAPHKVKHRTFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGPGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTTVVNKYAKDKKLLKDKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVAQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|213691852|ref|YP_002322438.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523313|gb|ACJ52060.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457947|dbj|BAJ68568.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 772

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 27/239 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPE 238



 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 307 EQPAHPRVVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGEGGELHAQ 364

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GGTH+ G  +A+T+QI   VE +    
Sbjct: 365 EIERTCGLDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKL 424

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 425 KVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 484

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 485 MITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 544

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 545 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 604

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 605 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 663

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 664 RIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGE-MDADQLADTTMD 722

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 723 PRTRMLRRIRMEDAAQASEI 742



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 671 HKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 730

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR++FI +N+
Sbjct: 731 IRMEDAAQASEIFSLLMGDDVPPRKQFIVDNA 762


>gi|259018108|gb|ACV89646.1| DNA gyrase subunit B [Nocardia transvalensis]
          Length = 414

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 172/417 (41%), Positives = 250/417 (59%), Gaps = 31/417 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  I   G  +   + +      L V G     TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQADIDYGGYHWTQEYKDAKP-GKL-VQGDPTKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF    +N++T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTIRFWADPNIFETTYYNFETVSRRLQEMAFLNKGLTITLTDQRVSDSEITEEVVSETAE 118

Query: 215 ------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                         + +  T  Y GG+E FV +++R K+ +  + +          +++A
Sbjct: 119 APKHEGEAATVTEQKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVGFTSKGTGHELEVA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD 
Sbjct: 179 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKEKDGNLTGDDI 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K 
Sbjct: 239 REGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNENLAHWFEANPADAKTIVQKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP+ SE+++VEGDSAGGSAK G
Sbjct: 299 VSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R    QAILP+RGKI+NVE++R DK+L + E+ ++ITA GTGI  D FDI+KLRYHK
Sbjct: 359 RDSMYQAILPIRGKIINVEKSRIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHK 414


>gi|312132593|ref|YP_003999932.1| parb [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773537|gb|ADQ03025.1| ParB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 772

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 27/239 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPE 238



 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 307 EQPAHPRVVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGEGGELHAQ 364

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GGTH+ G  +A+T+QI   VE +    
Sbjct: 365 EIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKL 424

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 425 KVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 484

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 485 MITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 544

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 545 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 604

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 605 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 663

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 664 RIALTGSHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGE-MDADQLADTTMD 722

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 723 PRTRMLRRIRMEDAAQASEI 742



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 671 HKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 730

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR++FI +N+
Sbjct: 731 IRMEDAAQASEIFSLLMGDDVPPRKQFIVDNA 762


>gi|227547667|ref|ZP_03977716.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227211922|gb|EEI79818.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 772

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 141/239 (58%), Gaps = 27/239 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL  +++I++ID+  PE
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPALKITIIDENVPE 238



 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 307 EQPAHPRVVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGEGGELHAQ 364

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GGTH+ G  +A+T+QI   VE +    
Sbjct: 365 EIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKL 424

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 425 KVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 484

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 485 MITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 544

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 545 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 604

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 605 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 663

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 664 RIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGE-MDADQLADTTMD 722

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 723 PRTRMLRRIRMEDAAQASEI 742



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 671 HKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 730

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR++FI +N+
Sbjct: 731 IRMEDAAQASEIFSLLMGDDVPPRKQFIVDNA 762


>gi|212659902|gb|ACJ37009.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 268

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 141/266 (53%), Positives = 186/266 (69%), Gaps = 2/266 (0%)

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 3   ADSILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYKVSGGL 62

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I R+G  Y+  ++ G    PL          GT + F P+ +
Sbjct: 63  HGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTTLRFKPAKE 121

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R     Y+GGI +FV +L + K
Sbjct: 122 IFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVEHLAQLK 180

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+ALTR +
Sbjct: 181 TPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALTRTL 240

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGF 326
            +Y+E++  +++ K +  GDD REG 
Sbjct: 241 GNYIEQNGIARQAKITFSGDDMREGM 266


>gi|23465987|ref|NP_696590.1| DNA gyrase subunit B [Bifidobacterium longum NCC2705]
 gi|23326703|gb|AAN25226.1| DNA gyrase subunit B [Bifidobacterium longum NCC2705]
          Length = 772

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 27/239 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPE 238



 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 307 EQPAHPRVVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGEGGELHAQ 364

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GGTH+ G  +A+T+QI   VE +    
Sbjct: 365 EIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKL 424

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 425 KVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 484

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 485 MITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 544

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 545 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 604

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 605 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 663

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 664 RIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGE-MDADQLADTTMD 722

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 723 PRTRMLRRIRMEDAAQASEI 742



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 671 HKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 730

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR++FI +N+
Sbjct: 731 IRMEDAAQASEIFSLLMGDDVPPRKQFIVDNA 762


>gi|322689397|ref|YP_004209131.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460733|dbj|BAJ71353.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 772

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 27/239 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPE 238



 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 307 EQPAHPRVVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGEGGELHAQ 364

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GGTH+ G  +A+T+QI   VE +    
Sbjct: 365 EIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKL 424

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 425 KVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 484

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 485 MITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 544

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 545 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 604

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 605 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 663

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 664 RIALTGSHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGE-MDADQLADTTMD 722

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 723 PRTRMLRRIRMEDAAQASEI 742



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 671 HKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 730

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR++FI +N+
Sbjct: 731 IRMEDAAQASEIFSLLMGDDVPPRKQFIVDNA 762


>gi|322691363|ref|YP_004220933.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456219|dbj|BAJ66841.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 758

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 27/239 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPE 238



 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 293 EQPAHPRVVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGKGGELHAQ 350

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GGTH+ G  +A+T+QI   VE +    
Sbjct: 351 EIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKL 410

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 411 KVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 470

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 471 MITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 530

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 531 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 590

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 591 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 649

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 650 RIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGE-MDADQLADTTMD 708

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 709 PRTRMLRRIRMEDAAQASEI 728



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 657 HKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 716

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR++FI +N+
Sbjct: 717 IRMEDAAQASEIFSLLMGDDVPPRKQFIVDNA 748


>gi|239621278|ref|ZP_04664309.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515739|gb|EEQ55606.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 758

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 27/239 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPE 238



 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 293 EQPAHPRVVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGEGGELHAQ 350

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GGTH+ G  +A+T+QI   VE +    
Sbjct: 351 EIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKL 410

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 411 KVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 470

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 471 MITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 530

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 531 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 590

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 591 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 649

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 650 RIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGE-MDADQLADTTMD 708

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 709 PRTRMLRRIRMEDAAQASEI 728



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 657 HKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 716

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR++FI +N+
Sbjct: 717 IRMEDAAQASEIFSLLMGDDVPPRKQFIVDNA 748


>gi|317482449|ref|ZP_07941466.1| hypothetical protein HMPREF0177_00859 [Bifidobacterium sp.
           12_1_47BFAA]
 gi|291516755|emb|CBK70371.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Bifidobacterium longum subsp. longum F8]
 gi|316916109|gb|EFV37514.1| hypothetical protein HMPREF0177_00859 [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 772

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 27/239 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPE 238



 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 307 EQPAHPRVVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGEGGELHAQ 364

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GGTH+ G  +A+T+QI   VE +    
Sbjct: 365 EIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKL 424

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 425 KVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 484

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 485 MITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 544

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 545 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 604

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 605 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 663

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 664 RIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGE-MDADQLADTTMD 722

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 723 PRTRMLRRIRMEDAAQASEI 742



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 671 HKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 730

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR++FI +N+
Sbjct: 731 IRMEDAAQASEIFSLLMGDDVPPRKQFIVDNA 762


>gi|254055399|gb|ACT64299.1| GryB [Pseudomonas aeruginosa]
 gi|254055401|gb|ACT64300.1| GryB [Pseudomonas aeruginosa]
 gi|254055403|gb|ACT64301.1| GryB [Pseudomonas aeruginosa]
 gi|254055405|gb|ACT64302.1| GryB [Pseudomonas aeruginosa]
          Length = 363

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 206/366 (56%), Positives = 274/366 (74%), Gaps = 4/366 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L+L I+R   ++E  + +G+   PL   G   + +GTEV F PS + 
Sbjct: 1   GVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++AFV YL+ +K 
Sbjct: 60  FSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNKT 117

Query: 242 PLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            + +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR +
Sbjct: 118 AVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+
Sbjct: 238 GKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SEL++VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 298 DPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 357

Query: 481 LGTGIG 486
           LG GIG
Sbjct: 358 LGCGIG 363


>gi|51571585|emb|CAH18959.1| gyrase B [Corallococcus coralloides]
          Length = 380

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 195/376 (51%), Positives = 264/376 (70%), Gaps = 3/376 (0%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            VN LS W K+RI+R G + E  +  G+ ++P    G   +  GT + F P   I    D
Sbjct: 8   CVNFLSEWFKVRIQRNGKVXEQGYARGVANSPPTEVG-TTDKRGTMIHFKPDPTIMETAD 66

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV YL++ K+ L   
Sbjct: 67  FNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGIASFVEYLNKAKEALHDK 124

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + SY EK
Sbjct: 125 PVFIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAALTRTLNSYAEK 184

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VND L++
Sbjct: 185 GGAWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGLVEQMVNDQLAS 244

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P  AK +V KV DA   R AAR+AR+  RRKGVLD   LPGKLADC  RDP++SE
Sbjct: 245 FLEENPPVAKKVVAKVGDACRARIAARKARETVRRKGVLDGGGLPGKLADCQSRDPQESE 304

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITALGTGIG
Sbjct: 305 LYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLITALGTGIG 364

Query: 487 QDSFDINKLRYHKIII 502
            + +D  K RYH+II+
Sbjct: 365 AEDYDPGKARYHRIIL 380


>gi|15551685|emb|CAC69422.1| DNA gyrase B subunit [Serratia marcescens]
          Length = 323

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 184/326 (56%), Positives = 238/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLTVVGETE- 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS   F+   DF YD L  RLRELSFLNS V I L DKR+   RE    Y+
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRTD--REDHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+  N+ L  +L E+P +AKI+V K++DA+  R+ AR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLTNEKLVDYLMENPGDAKIVVGKIIDAARSRETARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|212659909|gb|ACJ37011.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 267

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 142/269 (52%), Positives = 188/269 (69%), Gaps = 2/269 (0%)

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+  SYKVSGGL
Sbjct: 1   ADSILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYKVSGGL 60

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I R+G  Y+  ++ G    PL          GT + F P+ +
Sbjct: 61  HGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTTLRFKPAKE 119

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS  +F+Y+ L  RLRELSFLNS +++SLID+R  E R     Y+GGI +FV +L + K
Sbjct: 120 IFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVEHLAQLK 178

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+ALTR +
Sbjct: 179 TPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALTRTL 238

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +Y+E++  +++ K +  GDD REG  +V
Sbjct: 239 GNYIEQNGIARQAKITFSGDDMREGMIAV 267


>gi|11498141|ref|NP_069366.1| DNA gyrase, subunit B (gyrB) [Archaeoglobus fulgidus DSM 4304]
 gi|2650095|gb|AAB90708.1| DNA gyrase, subunit B (gyrB) [Archaeoglobus fulgidus DSM 4304]
          Length = 507

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 194/430 (45%), Positives = 279/430 (64%), Gaps = 11/430 (2%)

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            V G    + GT V F P  +IF   +F Y+ +  RL+EL++LN  ++I L D+R  +  
Sbjct: 37  EVLGETK-EHGTTVRFKPDREIFETTEFKYEIVAQRLKELAYLNRGLKIILFDEREGKE- 94

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  ++ GI   V  L+R++KPL   PI I+ ++D +S+++A+++ D   EN+  F NN
Sbjct: 95  -ETFHFEDGIIGLVRSLNRNRKPLH-EPIYIETTKDGVSVEVAIQFTDSDVENIQAFANN 152

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GG+H+ G R+ LTR +  Y +K     K    V G D REG T+V+S+K+P+P+F
Sbjct: 153 INTSEGGSHVVGFRAGLTRAVNEYGKKH---LKKFEPVTGVDIREGLTAVISVKVPEPQF 209

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +S+V++VVES V  G+  WLEE+P +A+ ++ K +     R+AA+RA++L 
Sbjct: 210 EGQTKTKLTNSDVKTVVESAVYSGVLRWLEENPAQAETLLNKFILNKKAREAAKRAKELV 269

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           +RK  L I +LPGKLADCS ++P++ ELF+VEG+SAGGSAKQ R R  QAILP++GKI+N
Sbjct: 270 KRKNEL-ITTLPGKLADCSSKNPEERELFIVEGESAGGSAKQARDRRFQAILPIKGKIIN 328

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+A   ++L + EI  +I+A+G GIG+D FDI K RY +IIIMTDADVDGAHIRTLLLT
Sbjct: 329 VEKAGMARVLKNDEIKAIISAIGAGIGKD-FDITKARYRRIIIMTDADVDGAHIRTLLLT 387

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF+R M  LI +G+LYI +PPLY I +GK   Y   +E L+  L    +           
Sbjct: 388 FFYRYMRPLIESGYLYIAQPPLYQIKKGKKSYYAYSDEELKRTLEQ--VGGGEVQRYKGL 445

Query: 580 GVISKNDLRN 589
           G ++   L  
Sbjct: 446 GEMNPQQLWE 455



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 95/268 (35%), Gaps = 6/268 (2%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +  L      K  +             N+ ++       D      +      ++    
Sbjct: 245 AETLLNKFILNKKAREAAKRAKELVKRKNELITTLPGKLADCSSKNPEERELFIVEGESA 304

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
                +              +   + N E      V    ++   ++ I     K +  +
Sbjct: 305 GGSAKQARDRRFQAIL---PIKGKIINVEKAGMARVLKNDEIKAIISAIGAGIGKDFDIT 361

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
                 ++      V    +      F +      I S  +      +  +         
Sbjct: 362 KARYRRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYIAQPPLYQIKKGKKSYYA 421

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L  T+  +G  G  +QRYKGLGEMN  QLWETT+NP+ R L++V + DA +AD+L
Sbjct: 422 YSDEELKRTLEQVG--GGEVQRYKGLGEMNPQQLWETTMNPENRILIQVTLEDAKRADEL 479

Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803
           FS LMG++VE RR FI  +S     LDI
Sbjct: 480 FSILMGEDVESRRNFIMAHSKEVKNLDI 507


>gi|224458595|gb|ACN43176.1| GryB [Aeromonas veronii]
          Length = 358

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 213/361 (59%), Positives = 272/361 (75%), Gaps = 3/361 (0%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   
Sbjct: 1   VVNALSDKLLLTIRRNGHVYEQTYHLGEPLAPLKQIGDST-GTGTEVRFWPSPAIFSDTL 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+   
Sbjct: 60  FHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPK 117

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                  +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K
Sbjct: 118 VFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDK 177

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ 
Sbjct: 178 EDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAD 237

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SE
Sbjct: 238 FLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSE 297

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR+R+NQA LPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG
Sbjct: 298 LYIVEGDSAGGSAKQGRNRKNQATLPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG 357

Query: 487 Q 487
           +
Sbjct: 358 R 358


>gi|6644319|gb|AAF21004.1|AF208253_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 214/383 (55%), Positives = 277/383 (72%), Gaps = 3/383 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG S VNAL   L L I+R G++YE ++  G    PL     A   TGTEV   
Sbjct: 1   SGGLHGVGDSEVNALFDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIADAT-TTGTEVRSW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS  IFS   F+Y+ L  R+RELSFLNS V I L+D+R  + RE    Y+GGI+AFV Y+
Sbjct: 60  PSPTIFSDTLFHYEILAKRMRELSFLNSGVCIRLMDER--DGREAHFCYEGGIKAFVEYM 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D I +++AM+ ND Y E V CFTNNI + DGGTHL GLR+AL
Sbjct: 118 NQNKTPMHPKVFHFTTEQDGIGVEVAMQCNDAYQEGVYCFTNNIAEPDGGTHLVGLRTAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K +  G   REG  +V+S+K+P P+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEDYSKKAKSAASGQQRREGLIAVISVKVPGPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD
Sbjct: 238 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 297

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SS  +GT
Sbjct: 298 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSHPVGT 357

Query: 477 LITALGTGIGQDSFDINKLRYHK 499
           LITAL  GIG+D ++ +KLR   
Sbjct: 358 LITALDCGIGRDEYNPDKLRVSH 380


>gi|296454311|ref|YP_003661454.1| DNA topoisomerase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183742|gb|ADH00624.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 771

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/243 (39%), Positives = 140/243 (57%), Gaps = 27/243 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNDI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I+++D+  PE 
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIVDENVPET 239

Query: 219 REI 221
              
Sbjct: 240 ATD 242



 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 306 EQPAHPRVVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGEGGELHAQ 363

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GGTH+ G  +A+T+QI   VE +    
Sbjct: 364 EIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKL 423

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 424 KVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 483

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 484 MITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 543

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 544 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 603

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 604 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 662

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 663 RIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGE-MDADQLADTTMD 721

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 722 PRTRMLRRIRMEDAAQASEI 741



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 670 HKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 729

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR++FI +N+
Sbjct: 730 IRMEDAAQASEIFSLLMGDDVPPRKQFIVDNA 761


>gi|108755448|dbj|BAE95688.1| DNA gyrase B [Segniliparus rugosus]
          Length = 417

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 182/420 (43%), Positives = 257/420 (61%), Gaps = 31/420 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS  L++ I  +G+ +  ++ N     PL V G+A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSYKLEVEIDVDGHHWTQAYDNAQP-GPL-VKGAAVKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----------- 219
           T V F     IF    +++DT+  RL+E++FLN  + I+L D R  +             
Sbjct: 59  TTVRFWADPKIFETTRYDFDTIARRLQEMAFLNKGLIITLTDLREGQIDASDEGEGVDTA 118

Query: 220 -----------------EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
                                 Y GG+  +V++++R K  +  S +  +G  +   +++A
Sbjct: 119 ELVRSEGDDEAKAPAVKRREYHYPGGLHDYVAHINRTKTAIHTSIVSFEGKGEGHEVEIA 178

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+  +++ GDD 
Sbjct: 179 MQWNSGYTESVYTFANTINTHEGGTHEEGFRAALTLTVNKYARDKKILKEKDKNLSGDDV 238

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG ++V+S+K+ +P+F  QTK KL ++E+RS V+   N+ L+ W E +P EAK+IV K 
Sbjct: 239 REGLSAVISVKLSEPQFEGQTKTKLGNTEIRSFVQKICNEELAHWFEANPSEAKVIVSKA 298

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
             A+  RDAA+ AR L RRK V DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK G
Sbjct: 299 QQAAQARDAAQNARALVRRKSVTDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGSAKSG 358

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+ E QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++
Sbjct: 359 RNSEFQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHKIVL 417


>gi|6729178|dbj|BAA89722.1| DNA gyrase subunit B [Couchioplanes caeruleus]
          Length = 396

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 181/400 (45%), Positives = 259/400 (64%), Gaps = 12/400 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + GN+Y   +       PL   G   + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGNVYRQKYTASKP-GPLEK-GEPTDTTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMF 224
           + V F P   IF   +F++ T+  R++E++FLN  + I+L+D+R        EPR +T  
Sbjct: 59  STVQFWPDPTIFETVEFDFQTIYRRIQEMAFLNKGLTINLVDERPESLDEQGEPRRVTFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y+ GI  FV +L+  K P+ +S I        D +++++AM+WN+ Y E+V  F N I  
Sbjct: 119 YEHGIADFVRHLNHTKSPIHKSVIEFDAEAPEDGMALEIAMQWNESYGESVYTFANTINT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  Q
Sbjct: 179 HEGGTHEEGFRAALTNTVNRYGA-EKKLLKSDEKLSGEDIREGLAAIISVKLANPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +++++S V+   N+ ++ W + +P EAK+I+ K   A+  R AA++AR L RRK
Sbjct: 238 TKTKLGNTDMKSFVQKIANERIADWFDRNPAEAKMIITKASQAARARIAAQQARKLARRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
            +L+  S+PGKLADC   DP+ SELF+VEGDSAGGSAKQGR  + QAILP+RGKILNVE+
Sbjct: 298 SLLESGSMPGKLADCQSTDPRVSELFIVEGDSAGGSAKQGRDSQIQAILPIRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AR D++L + E+ +LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 ARIDRVLKNNEVQSLITALGTGI-HDDFDIAKLRYHKIVL 396


>gi|308153092|dbj|BAJ22135.1| DNA gyrase subunit B [Streptomyces olivaceus]
          Length = 407

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 181/408 (44%), Positives = 254/408 (62%), Gaps = 24/408 (5%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A  +TGT VTF
Sbjct: 2   VSGGLHGVGVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAR-HEATEETGTSVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------------- 216
               D+F   D++++TL  R +E++FLN  + + L D+R                     
Sbjct: 61  WADGDVFETTDYSFETLSRRFQEMAFLNKGLTLKLTDEREEAKATAGADSAEVVDVPDEE 120

Query: 217 EPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENV 273
             R +T  Y+ GI  FV Y   R  + + QS I I+    +  +S ++AM+WN  Y E V
Sbjct: 121 STRTVTYHYENGIVDFVKYLNSRKGELIHQSVIDIEAEDKDRLLSAEIAMQWNTQYTEGV 180

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N I   +GGTH  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K
Sbjct: 181 YSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVREGLTAIISVK 240

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL ++E ++ V+  V++ L+ W + +P EA  I++K + AS  R AAR
Sbjct: 241 LGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAAR 300

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+
Sbjct: 301 KARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPI 360

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           RGKILNVE+AR DK+L + E+  LI+A GTG+ +D FDI KLRYHKII
Sbjct: 361 RGKILNVEKARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKII 407


>gi|254055407|gb|ACT64303.1| GryB [Burkholderia cepacia]
          Length = 374

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 205/377 (54%), Positives = 269/377 (71%), Gaps = 15/377 (3%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169
           GVGVS VNALSSWL+L ++R G    M F  GI              +P++VTG    + 
Sbjct: 1   GVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTE-NR 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG+
Sbjct: 60  GTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGV 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           + FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL
Sbjct: 118 KGFVEYINKTKTNLHPTVFHAIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KLVS
Sbjct: 178 TGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR+ VE  V   L  +L E PL+AKII  K+++A+  RDAAR+AR++TRRKGVLD   
Sbjct: 238 SEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVG 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+DK+L
Sbjct: 298 LPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLL 357

Query: 470 SSQEIGTLITALGTGIG 486
           SS++I TL+TALG GIG
Sbjct: 358 SSEQIVTLVTALGCGIG 374


>gi|308152571|dbj|BAJ22264.1| DNA gyrase subunit B [Mycobacterium sp.]
          Length = 419

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 179/421 (42%), Positives = 249/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I ++G  +  ++ N +    L         TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIYKDGYEWFQTYDNSVP-GTLKQG-DKTTKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    ++F    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPNVFETTVYDFETIARRLQEMAFLNKGLTIELTDERVTQDEIVDEVVADTAAA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +  T  Y GG+  FV +++R K  +  S I   G      +++
Sbjct: 120 PKTAEETAAEAAAPHKVKHRTFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGTGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD
Sbjct: 180 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTTVVNKYAKDKKLLKDKDPNLTGDD 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVAQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|328871183|gb|EGG19554.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1574

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 130/637 (20%), Positives = 235/637 (36%), Gaps = 74/637 (11%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGD--------------------TDGESGLH 42
           +      Y    +     LD +  RP  YIG                     T    GL+
Sbjct: 140 EKTVEEIYQKKDL-----LDQILLRPDTYIGSIEKQEEELWIWENDRMKKRKTVFVPGLY 194

Query: 43  HMIYEVLDNAIDESLEGYA---DIITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAEV 98
            +  E+L NA D            I V +N  D   +V ++G+G+P ++HK E +   E+
Sbjct: 195 KIFDEILVNAADNLQRKDGQPMKSIKVEINANDNRISVWNDGKGVPVEMHKGEKMQVPEL 254

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILD 156
           +   L     ++    +++GG +G G  + NA S    +         +++ +F   +  
Sbjct: 255 VFGHLLTSSNYDDSEERLAGGRNGFGAKLTNAFSQKFLVECADSARKKLFKQTFTKNMKQ 314

Query: 157 NPLVVTGS-AGNDTGTEVTFLPSSDIFSVQDFNYDTLQH----RLRELSFLNSSVQISLI 211
               V  S       T++TF P    F +   + D        R+ +++  N S+++ L 
Sbjct: 315 RDEPVIESYTKATDYTKITFHPDLARFGMTRLDDDDNLELLTKRVYDIAGCNQSLKVYLN 374

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
            K                +              ++   +   R N   ++A+  +DG  +
Sbjct: 375 GKLIGFNSFTDYIDTYFKDD-------------ENAPVVVYERVNPRWEIAVACSDGTPQ 421

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N+I    GGTH++   + +T  I + V K     K    +     +      ++
Sbjct: 422 QV-SFVNSICTNKGGTHVTYALTKITEAIIAQVAKKN---KGGIEMKPSFVKNHLFIFVN 477

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             + +P F SQTKE   S           +D    +L+        IV +++  +  ++ 
Sbjct: 478 CLIVNPAFDSQTKETCSSKVSTYGSTCIPSDK---FLKSVCETKTGIVDQIISWAKHKET 534

Query: 392 ARRARDLTR-------RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
               +   +           LD A+  G       +  +   L L EGDSA   A  G S
Sbjct: 535 VDLKKTTPKATKKGRLNIEKLDEANFAG------TKKSEDCTLILTEGDSAKTLATAGIS 588

Query: 445 R---ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
               ++  + PLRGK++NV       +L+++EI  +   +G     +  +I+ LRY  ++
Sbjct: 589 VVGWDHYGVFPLRGKVINVREVSHRSILANEEIRNIFEIMGFQHNVNYDNISTLRYGHLM 648

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITR-GKSLQYVKDEESL 559
           IMTD D DG+HI+ L+L F     PSL+  +GFL     P+    +              
Sbjct: 649 IMTDQDHDGSHIKGLILNFIHHFWPSLLKIDGFLMEFITPIIKAFKGKNKPISFYTIPEY 708

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
             +            +    G     + + +  D  +
Sbjct: 709 LKWKETNGGKGYEIKYYKGLGTSKAEEGKEYFADIER 745


>gi|197295769|gb|ACH58594.1| gyrase subunit B [Methylobacterium hispanicum]
          Length = 384

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 228/382 (59%), Positives = 285/382 (74%), Gaps = 7/382 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS WLKLRI R    + M F +G    PL V G      GTEVTFLPS++ F++ +F
Sbjct: 1   VNALSVWLKLRIWRNDQEHAMEFGHGEAKAPLKVVGPGNGRRGTEVTFLPSTETFTMVEF 60

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL--MQ 245
           +Y TL+ RLREL+FLNS V+I L D R  E +   ++Y GGIEAFV YLDR +KP+  M 
Sbjct: 61  DYATLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYDGGIEAFVRYLDRSRKPIEGMS 120

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ ++  RD I +++A  WND ++E VL FTNNIPQ+DGGTH++G R+ALTRQIT Y E
Sbjct: 121 KPVVVRSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAALTRQITGYAE 180

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            S  +K++K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  VE+ +N+GLS
Sbjct: 181 SSGVAKREKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPAVENVLNEGLS 240

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLADC ERDP K 
Sbjct: 241 TWLEENPSQAKALMGKVVLAASAREAARKARETVTRKGALDIASLPGKLADCQERDPTKC 300

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS EIGTLITALG GI
Sbjct: 301 EILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADRMLSSAEIGTLITALGAGI 360

Query: 486 GQDSFDIN-----KLRYHKIII 502
           G+ S D       KLRYH + I
Sbjct: 361 GRSSTDXEGXNPXKLRYHXVXI 382


>gi|188037306|gb|ACD46274.1| DNA gyrase subunit B [Providencia stuartii]
          Length = 270

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 156/273 (57%), Positives = 199/273 (72%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++
Sbjct: 1   IHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIRRDGKVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSS 205
           E ++ +G    PL V G   + TGT V F PS D F  V +F YD L  RLRELSFLNS 
Sbjct: 61  EQTYCHGEPQGPLTVVGET-DQTGTRVRFWPSLDTFKGVTEFEYDVLAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I LIDKR  +       Y+GGI+AFV YL R+K P+  S       +D I +++AM+W
Sbjct: 120 VSIRLIDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGIGVEIAMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV C+TNNIPQ+DGGTHL+G R+++TR + +Y++K    KK K S  GDD REG
Sbjct: 178 NDGFQENVYCYTNNIPQRDGGTHLAGFRASMTRTLNNYMDKEGYQKKAKVSATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|4001684|dbj|BAA35071.1| DNA gyrase subunit B [Micromonospora aurantiaca]
          Length = 386

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 178/390 (45%), Positives = 254/390 (65%), Gaps = 9/390 (2%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G A + TG+ V+F P
Sbjct: 1   GGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYHHSKP-TPLEK-GEATDRTGSAVSFWP 58

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAF 232
             D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y+GGI  F
Sbjct: 59  DPDVFETVDFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIADF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +GGTH  G 
Sbjct: 119 VRHLNASKSPIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALT  +  Y        K    + G+D REG  +++S+K+ DP+F  QTK KL ++ V
Sbjct: 179 RAALTSVVNRYGA-EKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTPV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L+  S+PG
Sbjct: 238 KGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + 
Sbjct: 298 KLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNN 357

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 EVQALITALGTGI-HDDFDIEKLRYHKIVL 386


>gi|10281016|dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 145/713 (20%), Positives = 254/713 (35%), Gaps = 32/713 (4%)

Query: 40  GLHHMIYEVLDNAIDESLEGYA-DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D  +       I V ++ +  +  V ++G+GIP ++H +E +   E
Sbjct: 14  GLYKIFDEILVNAADNKIRDPTMKNIKVKIDPENNTIEVMNDGKGIPVEMHTKENMYIPE 73

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL 155
           +I   L     ++    KV+GG +G G  + N  S+  ++       G +Y+  + + + 
Sbjct: 74  LIFGNLLTSSNYDDNQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQVWTDNMT 133

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLI 211
                 +T        T++TF P    F +   + D    L+ R+ +L     +  I L 
Sbjct: 134 NVAKPKITTLRTKKEYTKITFKPDLAKFDMDSLDEDLLAVLRRRVYDLCGTVKNCNIYLN 193

Query: 212 DKRSPEPREITM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
           DKR       +            S     +    ++   I     N   ++A   +DG  
Sbjct: 194 DKRLSISSFKSYVEMYVKAIRERSPEPLTEDGTSKNFTTIVHEVFNERWEVAFAVSDGTF 253

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
             V  F N+I    GGTH+  +   +  ++   + K    KK    +   + R+     +
Sbjct: 254 NQV-SFVNSIATTAGGTHVKYVSDQIINKLVETLSKKEKGKKK-LMIKPQEVRDNMFLFI 311

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           +  + +P F+SQTKE+L +   +          ++     + +    IV K+   +   +
Sbjct: 312 NCLIENPAFTSQTKEQLTTKVSQF---GGKQKFVANDNLINRILKTSIVDKIRAIANANE 368

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---REN 447
                +    RK  +              +      L L EG SA   A  G S   R+ 
Sbjct: 369 DKALQKADGSRKSRIKGQVSLVDANKAGTKLGHNCTLILTEGLSALNLAVAGLSVVGRDY 428

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMTD 505
               PLRGK+LNV  A  D++  + EI  L   +G    +     +I +LRY  I+IMTD
Sbjct: 429 YGCFPLRGKLLNVREASADQISKNAEINALKQIIGLQHKKHYTAENIKQLRYGHIMIMTD 488

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITR------GKSLQYVKDEES 558
            D DG+HI+ L++ F     P L+   GFL     P+  +T          +        
Sbjct: 489 QDQDGSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVKVTIKTRGSGNNRVIPFYTMPE 548

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
            E +   +                S         +A +    +            E A  
Sbjct: 549 FEAWRDGEGSQCRWTHKYYKGLGTSTPM------EAREYFTALDRHLKKFHALQGEDASY 602

Query: 619 SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
             +   +   +             +   E +E      IN   IL            VL+
Sbjct: 603 IDLAFSKKKADERKDWLQGFIPGTHLDPEINEIPISDFINKELILFSMSDNIRSIPSVLD 662

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
           G         Y  I      E  +  L+   + +     G  SL+ TI  + +
Sbjct: 663 GLKPGQRKVLYGCIKKKLKSEIKVAQLAGYVSENTGYHHGEQSLVQTIIGLAQ 715


>gi|330983692|gb|EGH81795.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 268

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/266 (38%), Positives = 161/266 (60%), Gaps = 9/266 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    N++Y+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE++ G+
Sbjct: 1   MTQ--MNATYNADAIEVLSGLDPVRKRPGMY---TDTTRP-NHLAQEVIDNSVDEAMAGH 54

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  I V L+ D S  V D+GRG+P D+H EEGI   E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 55  AKSIKVILHEDNSLEVIDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSGKNYQFSGGL 114

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSS 179
           HGVG+SVVNALS+ + + + R G+++ + F +G   + L V GSA    TGT V F P +
Sbjct: 115 HGVGISVVNALSTRVDVEVTRGGSVHHIGFGDGFKSSDLKVIGSAPKRATGTSVRFWPDA 174

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F    F+   ++H L+  + L   + IS  D  + E  E     + G+ ++++     
Sbjct: 175 KYFDTPKFSISRMKHILKAKAVLCPGLAISFEDLGTGEKVEWHF--EDGLRSYLNDACGE 232

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRW 265
            + L + P     + D ++++ A+ W
Sbjct: 233 VERLPEEPFVGALASDTLAVEWALTW 258


>gi|109452318|dbj|BAE96356.1| DNA gyrase subunit B [Pasteurella pneumotropica]
          Length = 355

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 210/358 (58%), Positives = 271/358 (75%), Gaps = 3/358 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R+G+++E  +  G    PL V G   + +GT V F PS DIF++
Sbjct: 1   VSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTVIGDT-DVSGTTVLFWPSPDIFAI 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y  L  RLRELSFLNS V I LIDKR  +  E    Y+GGI+AFV YL+++K P+ 
Sbjct: 60  TTFDYKILAKRLRELSFLNSGVSIRLIDKR--DGAEDHFHYEGGIQAFVEYLNKNKNPIH 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + +Y+
Sbjct: 118 PKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSLNNYM 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ +
Sbjct: 178 ESEGLLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKM 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 QEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG
Sbjct: 298 SELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALG 355


>gi|313235194|emb|CBY25067.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 131/701 (18%), Positives = 261/701 (37%), Gaps = 58/701 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
            ++ + +  L+ V  RP MY+G  +                          L+ +  E+L
Sbjct: 6   EETYKKVDSLEHVLLRPDMYVGSIEASKENMWVFDAESTQFVQKEIEFIPALYKIYDEIL 65

Query: 50  DNAIDESLEGYA-DIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +     +++ V ++  +   +V +NG+GIP ++HKE G+   E+I   +    
Sbjct: 66  VNAADNKVRDPNQNMVKVDIDTENNKISVLNNGKGIPIEIHKEHGVYVPELIFGHMMTSS 125

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSA 165
            +++   K +GG +G G  + N  S+   +    K+ G    +++   +      V  S 
Sbjct: 126 NYDESEKKTTGGRNGYGAKLCNIFSTEFTVETVNKKIGKRLTVTWTGNMKKKGNAVIKSY 185

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
             D  T+++F P    F++   + D     + R  +++     V + L  +R    ++  
Sbjct: 186 SKDDYTKISFTPDLKRFNMTHLSNDMVSLFRKRAYDIAGTTPGVSVFLDGQRIAFNKKDP 245

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                 +      LD  K+  +    + +        D+    +D   +N+  F N+I  
Sbjct: 246 FKDYCNMYTKGKILDTGKEVTL-IYEKPENKEAKGRWDVGFAISDNGFQNI-SFVNSINT 303

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG H++ +   L +++   V K     K   +V     +      ++ ++ +P F SQ
Sbjct: 304 SKGGHHVNAISDQLVKRLEELVNKKN---KGGLAVKAHQIKSHCWIFVNSQIENPAFDSQ 360

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L   + +   +  ++D     +E+  +   I        +  +      +      
Sbjct: 361 TKETLTLVKSKHGSKPILSDAFIKKVEKSGIVETITNFMKFKENQAKGKIGGKKQKKVVI 420

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKI 457
             LD A   GK         K   L L EGDSA      G +     +    + PLRGK+
Sbjct: 421 LKLDDAPEAGKT------RSKDCTLILTEGDSAKTAALAGVSSMADLKRYYGVFPLRGKL 474

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIR 514
           LN   A   ++  ++EI  +I A+G    +   +      LRY +++IMTD DVDG+HI+
Sbjct: 475 LNAREAGHQQLTKNEEIKNIIQAMGFDFKRKYDNPEDLKSLRYGRLMIMTDQDVDGSHIK 534

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-------QYVKDEESLEDYLINQS 567
            L++ F     P++I    +     P+  I   K                    +     
Sbjct: 535 GLIINFLHHFWPNMIRGPTVQQFITPIVKIFLKKDENKQNCKKTNFYSLPEFNKWQREVP 594

Query: 568 -LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
            L      +    G     + + +  D  +     +   PN D+    +   +     + 
Sbjct: 595 NLDAYRVEYYKGLGTSGPEEFKEYFQDIQRHRIPFRYSGPNCDERI--KMAFARDLVDDR 652

Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667
            + +    A +    L    + +  ++   I+   ++    
Sbjct: 653 KEWLTEFEAGEDELTLYDREQINYVTYKDFIDKELVIFSHE 693


>gi|254055419|gb|ACT64309.1| GryB [Pseudomonas sp. CMR5c]
          Length = 362

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 204/365 (55%), Positives = 275/365 (75%), Gaps = 3/365 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++++G+    + + G +   TGT++ F PS++ 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQERMKIVGDSE-TTGTQIHFKPSAET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+R+ +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDVLAKRIRELSFLNSGVGIVLKDERTGKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++E++LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNVQRDDGIGVEVALQWNDSFNESLLCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 NYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+D
Sbjct: 238 KYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL
Sbjct: 298 PALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 357

Query: 482 GTGIG 486
           G GIG
Sbjct: 358 GCGIG 362


>gi|22761995|dbj|BAC11784.1| gyrase B [Helicobacter pylori]
 gi|22762001|dbj|BAC11787.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 180/394 (45%), Positives = 252/394 (63%), Gaps = 7/394 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--ND 168
             +YKVSGGLHGVGVSVVNALS  L + IK+EG IY   F  GI  + L + G      +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKHLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 61  SGTAIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 119 LKQFVKDSAKKELLTPIISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++ +   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 179 EAGFKMGLSKAILQYIDTN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 236

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 237 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 297 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 356

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           L S+EI  +ITA G GI Q+SFDI +LRYHKIII
Sbjct: 357 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIII 389


>gi|254055369|gb|ACT64284.1| GryB [Pseudomonas sp. R11-45-07]
          Length = 362

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 206/365 (56%), Positives = 273/365 (74%), Gaps = 3/365 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSAET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDILAKRIRELSFLNSGVGIILKDERSAKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E    +KK K +  GDD REG T+++S+K+PD +FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 TYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDRKFSSQTKDKLVSSEVKTAVEQEMG 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+D
Sbjct: 238 KYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL
Sbjct: 298 PALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 357

Query: 482 GTGIG 486
           G GIG
Sbjct: 358 GCGIG 362


>gi|324962624|gb|ADY62414.1| gyrase subunit B [Frankia sp. DC12]
          Length = 362

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 154/361 (42%), Positives = 217/361 (60%), Gaps = 10/361 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V DNGRGIP  +H  E     EV++T+LHAGGKF+ +SY VSGGLHGVG+S
Sbjct: 1   TLLADGGVRVVDNGRGIPVGMHPTEKRPTVEVVLTKLHAGGKFDGESYAVSGGLHGVGIS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSV 184
           VVNALS+ + + IK +G ++   +       PL        G  TGT VTF    +IF  
Sbjct: 61  VVNALSTKVDVEIKVDGFVWAQRYTAQRP-GPLEKRAPLKRGERTGTTVTFWADPEIFET 119

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            ++ Y+TL  RL+E++FLN  + ISL D+R  EP E+T  Y+ G+  FV++L+  K P+ 
Sbjct: 120 TEYKYETLYRRLQEMAFLNKGISISLRDERPEEPVEVTFMYEKGLADFVTHLNATKDPIH 179

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           ++ + ++     I  ++AM+WN GY+E+V  F N I   +GGTH  G R+ALT  +  Y 
Sbjct: 180 KTIVALEAKGKGIEAEVAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNVYA 239

Query: 305 EKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           ++    K  K         + GDD REG T+++S+K+ +P+F  QTK KL ++E +  V+
Sbjct: 240 KEQNLLKPVKAGAKNTDERLSGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEAKKFVQ 299

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
                 L  W + + +EA+ IV K LDA   R AAR ARDLTRRKG+L    LPGKL+DC
Sbjct: 300 EMCYSALRDWFDANRVEARSIVGKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLSDC 359

Query: 418 S 418
            
Sbjct: 360 Q 360


>gi|254055417|gb|ACT64308.1| GryB [Pseudomonas sp. CMR12a]
          Length = 362

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 206/365 (56%), Positives = 274/365 (75%), Gaps = 3/365 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++++G+    + + G +   TGT++ F PS++ 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQERMKIVGDSE-TTGTQIHFKPSAET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDVLAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++E++LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNVQRDDGIGVEVALQWNDSFNESLLCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 NYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              S +L E+P EAK++V K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+D
Sbjct: 238 KYFSDFLLENPNEAKLVVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SEL+LVEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL
Sbjct: 298 PALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 357

Query: 482 GTGIG 486
           G GIG
Sbjct: 358 GCGIG 362


>gi|211927045|dbj|BAG82775.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 174/424 (41%), Positives = 250/424 (58%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ +++ I  +G  +  ++ +     PL V G    +TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKP-GPL-VQGEPTTETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T V F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTVRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTEDVVPVTAE 118

Query: 223 ------------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                                     Y GG+E +V +++R K+ +  S +          
Sbjct: 119 APKTATEIEEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K     + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ ++ W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 VTKAVSSAQARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|71833750|emb|CAI94314.1| gyrase B [Helicobacter canis]
          Length = 366

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 170/371 (45%), Positives = 242/371 (65%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I + GNIY   F  GI  + L + G   N  GT + F P 
Sbjct: 1   GLHGVGVSVVNALSKKLIMTIHKNGNIYRQEFAAGIPTSELEIIGKT-NKNGTIIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I  V +F+ D L  R +E+++LN S+ I  ID+RS          + G+  F+   D 
Sbjct: 60  DSIMEVIEFDKDVLTRRFKEMAYLNQSLTIDFIDERSGFRESYHF--ENGLMQFIQ--DI 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+P + S I  +G+     +++A+ +N+G+ ENVL F NNI   DGGTH +G R+ L+R
Sbjct: 116 NKRPAIASTIYFKGADQETEMEIALVYNEGFDENVLSFVNNIRTPDGGTHEAGFRAGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V GDD REG  +++S ++ DP+F  QTK KL SS ++ +++ 
Sbjct: 176 VIMNYIEANANAREKDIKVTGDDVREGLVAIISTRIIDPQFEGQTKGKLGSSFIKPIIQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + LS + EE+P +AK I++K L A+  R+AA++AR+LTR+K    + +LPGKLADC 
Sbjct: 236 LTTERLSKYFEENPNDAKAIIQKALLAARGREAAKKARELTRKKENFSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP +SE++LVEGDSAGGSAKQ R R  QAILPLRGKILNVE++R DK+L S+EI  +I
Sbjct: 296 SKDPTESEIYLVEGDSAGGSAKQARDRLYQAILPLRGKILNVEKSRLDKILKSEEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G GIG+D 
Sbjct: 356 TAFGCGIGEDF 366


>gi|10281022|dbj|BAB13752.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 138/662 (20%), Positives = 238/662 (35%), Gaps = 37/662 (5%)

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D  +       I V ++ +     V ++G+GIP ++H +E +   E
Sbjct: 14  GLYKIFDEILVNAADNKIRDPSMKNIKVRIDPENNVIQVFNDGKGIPVEMHTKEKMYIPE 73

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL 155
           +I   L     ++    KV+GG +G G  + N  S+  ++       G +Y+ ++ + + 
Sbjct: 74  LIFGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQTWTDNMT 133

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLI 211
                 +T        T++TF P    F +   + D    L+ R+ +L     +  I L 
Sbjct: 134 KVGKPKITALKTKKEYTKITFKPDLSKFDMDSLDEDLLSVLRRRVYDLCGTVRNCNIYLN 193

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           DKR       +              +   +   ++   I     N   ++A   +DG   
Sbjct: 194 DKRLSVNSFKSYVEMYVKAIKERSPEPEGEGAPKNFTTIVHEVFNDRWEVAFAVSDGTFN 253

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N+I    GGTH+  +   +  ++   + K     K K  +  ++ R+     ++
Sbjct: 254 QV-SFVNSIATTAGGTHVKYVSDQIISKLVETLSK-KEKGKKKLMIKPNEVRDNMFIFIN 311

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI--IVKKVLDASMVR 389
             + +P F+SQTKE+L +      V  F         +          I +K+ D +   
Sbjct: 312 CLIENPAFTSQTKEQLTTK-----VSQFGGKEKFVASDNLIARVLKTGIAEKIRDIANAN 366

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRS 444
           +     +    RK  +              +D  K  L L EG SA      G    GR 
Sbjct: 367 EDKALQKVDGSRKSRIKGQVNLVDANKAGTKDGTKCTLILTEGLSALNLAVAGLTVIGRD 426

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIII 502
                  PLRGK+LNV  A  D++  + EI  L   +G    +     +I  LRY  I+I
Sbjct: 427 --YYGCFPLRGKLLNVREASADQIAKNAEINALKQIIGLQHKKAYTAENIKSLRYGHIMI 484

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRG----KSLQYVKDEE 557
           MTD D DG+HI+ L++ F     P L+   GFL     P+  +T      K +       
Sbjct: 485 MTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKGRGAKKVIPFYSMP 544

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
             E +   +  +             S         +A +    +            E + 
Sbjct: 545 EFEAWREGEGQTCRWTQKYYKGLGTSTPM------EAREYFTALDRHLKRFHALQGEDSN 598

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
              +   +   +                 E +E      IN   IL            VL
Sbjct: 599 YIDLAFSKKKADERKEWLQNFVPGNQLDPELNEIPISEFINKELILFSMSDNIRSIPSVL 658

Query: 678 EG 679
           +G
Sbjct: 659 DG 660


>gi|71833772|emb|CAI94325.1| gyrase B [Helicobacter bizzozeronii]
          Length = 366

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 161/371 (43%), Positives = 238/371 (64%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L + IKR G I+   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSTKLIMTIKRGGQIFRQEFAKGIPTTPLEVVGTTKEQ-GTSIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I  V  F+   LQ R +E+++LN  + I    +  P   + T  Y  G++ F+   D 
Sbjct: 60  PSIMEVVAFDSSVLQKRFQEMAYLNHGLTIHF--EDQPHQIKETYHYAAGLKQFIL--DN 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K PL+   I      +++ +++A+ +N+GY E +  F N+I   +GGTH SG R  L+R
Sbjct: 116 NKNPLISEVIAFSAQAEDMEVEIALAYNEGYSEQMFSFVNSIRTPEGGTHESGFRMGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y++++  +++ +  V+ +D +EG  +V+S ++ +P+F  QTK KL SS VR VV  
Sbjct: 176 AILNYIQENANAREKEAGVVQEDIKEGLLAVVSARILEPQFEGQTKAKLGSSFVRPVVAK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  A+ I++K L A+  R+AA++A++LTR+K  L + +LPGKLADC 
Sbjct: 236 LVYEKMAKFFEENPSVARAIMQKALLAAKGREAAKKAKELTRKKDNLSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DPK+ E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++   K+L S+EI  +I
Sbjct: 296 SKDPKECEIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKSHLGKILKSEEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G G+GQ+ 
Sbjct: 356 TAFGCGVGQEF 366


>gi|319958756|gb|ADV90548.1| DNA gyrase subunit B [Bacillus pumilus]
 gi|319958758|gb|ADV90549.1| DNA gyrase subunit B [Bacillus pumilus]
 gi|319958760|gb|ADV90550.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 366

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 176/368 (47%), Positives = 252/368 (68%), Gaps = 3/368 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    F+Y
Sbjct: 1   LSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           DTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+  
Sbjct: 120 IEGEKDGITIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGV 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +L 
Sbjct: 180 FKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL++
Sbjct: 240 ENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLRY 497
           F + K RY
Sbjct: 359 FTLEKARY 366


>gi|308153192|dbj|BAJ22185.1| DNA gyrase subunit B [Corynebacterium flavescens]
          Length = 443

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 176/446 (39%), Positives = 252/446 (56%), Gaps = 57/446 (12%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++  IKR+G  +  +F N I    L V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEAEIKRDGKHWYQNFSNAIP-EDL-VEGGNARGTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------- 214
           T + F    +IF   ++++  +  RL+E++FLN  + I LID+R                
Sbjct: 59  TIIRFWADPEIFETTEYDFKVISRRLQEMAFLNKGLTIELIDERVTREQLELEAIADAES 118

Query: 215 -SPEPREITMFYKGG-------------------------------------IEAFVSYL 236
                   +     G                                     +  +V +L
Sbjct: 119 GETTLDAESFDDTDGSAGVDPDASADLSTGAPEAKKSGKKLQKKITFYYPDGLIDYVKFL 178

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           ++ K P+  + +      +   +++AM+WN GY E+V  F N I   +GGTH  G R+AL
Sbjct: 179 NKSKTPIHPTIVAFDAKGEEHEVEVAMQWNQGYKESVHTFANTINTYEGGTHEEGFRAAL 238

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T  +  Y ++    K+   ++ GDDCREG  +V+S+K+ DP+F  QTK KL +SE++  V
Sbjct: 239 TSLMNRYAKEHKLIKEKDGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFV 298

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +  VN+ ++ W + +P EAK I+ K + ++  R AAR+AR++ RRK   D+  LPGKLAD
Sbjct: 299 QRAVNEHVNDWFDANPAEAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLAD 358

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DPK SEL++VEGDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  
Sbjct: 359 CRSKDPKISELYIVEGDSAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQA 418

Query: 477 LITALGTGIGQDSFDINKLRYHKIII 502
           +ITALGTGI ++ FDI KLRY KI++
Sbjct: 419 IITALGTGIHEE-FDIKKLRYDKIVL 443


>gi|296051273|gb|ADG86633.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 420

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 182/423 (43%), Positives = 251/423 (59%), Gaps = 38/423 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ +++ I  +G  +  +F +   D   +V G     TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGFHWSETFTDSKPDG--LVKGEPTRKTG 58

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T V F P + IF+    FN +T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  TTVRFWPDASIFTETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNAEGE 118

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                +P+  T  Y  G+  ++ +L+R K P+ +S I   G   
Sbjct: 119 ESNTETAEEVKSEEEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGT 178

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY E+V  F N I   +GGTH  G R+ALTR + SY  +    K+   
Sbjct: 179 GHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKEKDD 238

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V     + +  W E +P EA
Sbjct: 239 NLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANPAEA 298

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KII+ K ++++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E++LVEGDSA
Sbjct: 299 KIIINKAVESAHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEGDSA 358

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KL
Sbjct: 359 GGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIKKL 417

Query: 496 RYH 498
           RYH
Sbjct: 418 RYH 420


>gi|294963330|gb|ADF50152.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 367

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 177/369 (47%), Positives = 257/369 (69%), Gaps = 3/369 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF     
Sbjct: 1   VNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + 
Sbjct: 60  YDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEE 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  +
Sbjct: 120 PIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARR 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  
Sbjct: 180 KGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALET 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SE
Sbjct: 240 FLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG
Sbjct: 300 LYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIG 359

Query: 487 QDSFDINKL 495
           +D F++ K 
Sbjct: 360 ED-FNLEKA 367


>gi|324962628|gb|ADY62416.1| gyrase subunit B [Frankia sp. BMG5.7]
          Length = 363

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 154/362 (42%), Positives = 215/362 (59%), Gaps = 11/362 (3%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP  +H  E     EV++T LHAGGKF+ +SY VSGGLHGVG+S
Sbjct: 1   TLLADGGVRVTDNGRGIPVGMHPTEKRPTVEVVLTTLHAGGKFDGESYAVSGGLHGVGIS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ IK +G ++   ++    D PL   G+    TGT VTF     IF   +
Sbjct: 61  VVNALSTRLEVEIKVDGFVWFQPYVATRPDKPLAK-GAPTKQTGTTVTFWADPTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR---SPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + ++TL  RL+E++FLN  + I+L D+R     EP  +T  Y GG+  FV +L+  K  +
Sbjct: 120 YKFETLYRRLQEMAFLNKGISITLRDERVEEGEEPVSVTYKYDGGLVDFVIHLNATKDAI 179

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            +S I ++     I  ++AM+WN GY+E+V  F N I   +GGTH  G R+ALT  + +Y
Sbjct: 180 HRSVIALESKGKGIEAEVAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAY 239

Query: 304 VEKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            +     K  K         + GDD REG T+++S+K+ +P+F  QTK KL ++E +  V
Sbjct: 240 AKDQNLLKPVKSGSKSGDERLSGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEAKKFV 299

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +      L  W   + +E + IV K LDA   R AAR ARDLTRRKG+L    LPGKL+D
Sbjct: 300 QEMCYSALGDWFHGNRVEGRAIVGKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLSD 359

Query: 417 CS 418
           C 
Sbjct: 360 CQ 361


>gi|319958748|gb|ADV90544.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 368

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 178/370 (48%), Positives = 258/370 (69%), Gaps = 3/370 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF     ++Y
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETIVYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  +   
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGI 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  +L 
Sbjct: 180 FKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLRYHK 499
           F++ K RYHK
Sbjct: 359 FNLEKARYHK 368


>gi|291457727|ref|ZP_06597117.1| DNA gyrase subunit B [Bifidobacterium breve DSM 20213]
 gi|291380780|gb|EFE88298.1| DNA gyrase subunit B [Bifidobacterium breve DSM 20213]
          Length = 783

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 95/241 (39%), Positives = 140/241 (58%), Gaps = 27/241 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G+ + I
Sbjct: 1   MPKEEYGAKDLSVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGFCNNI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D   + G+S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYADADPVNPSPDSPFKRTRKNKPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I+++D+  P+ 
Sbjct: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIVDENVPKT 239

Query: 219 R 219
            
Sbjct: 240 N 240



 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 219/440 (49%), Gaps = 34/440 (7%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS------------------- 253
           ++   PR +   + GG++ FV +L +     +    RIQG                    
Sbjct: 318 EQPAHPRTVEFLHTGGVKDFVDFLSKG--EPISDIWRIQGEGTYKEETQAVGEGGELHAQ 375

Query: 254 --RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                  +D+A+RW +GY   ++ F N +    GG H+ G  +A+T+QI   VE +    
Sbjct: 376 EIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGMHVDGFMNAITKQIRKAVEDNARKL 435

Query: 312 KDKRSVIGD-----DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           K             D + G  +V++ ++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 436 KVNLKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGE 495

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC   + 
Sbjct: 496 MITGSKRGYKEQSARVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGND 555

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 556 DVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVG 615

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G  SFDI + RYHKII+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+
Sbjct: 616 AGSG-QSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLH 674

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602
            I    S +        +D L  +    + +    +  +     L   +D     D  + 
Sbjct: 675 RIALTGSHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGE-MDADQLADTTMD 733

Query: 603 DFYPNHDKTFIEQAVISGVF 622
                  +  +E A  +   
Sbjct: 734 PRTRMLRRIRMEDAAQASEI 753



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 682 HKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 741

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++F+ LMGDEV PR++FI +N+
Sbjct: 742 IRMEDAAQASEIFNLLMGDEVPPRKQFIVDNA 773


>gi|71833774|emb|CAI94326.1| gyrase B [Helicobacter bizzozeronii]
          Length = 366

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 162/371 (43%), Positives = 238/371 (64%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L + IKR G I+   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSTKLIMTIKRGGQIFRQEFAKGIPTTPLEVVGTTKEQ-GTSIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I  V  F+   LQ R +E+++LN  V I    +  P   + T  Y  G++ F+   D 
Sbjct: 60  PSIMEVVAFDSSVLQKRFQEMAYLNHGVTIHF--EDQPNQIKETYHYTEGLKQFIL--DT 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K PL+   I      +++ +++A+ +N+GY E +  F N+I   +GGTH SG R  L+R
Sbjct: 116 NKNPLISDVIAFSAQAEDMEVEIALAYNEGYSEQMFSFVNSIRTPEGGTHESGFRMGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y++++  +++ +  V+ +D +EG  +V+S ++ +P+F  QTK KL SS VR VV  
Sbjct: 176 AILNYIQENANAREKEAGVVQEDIKEGLLAVISARILEPQFEGQTKAKLGSSFVRPVVAK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  A+ I++K L A+  R+AA++A++LTR+K  L + +LPGKLADC 
Sbjct: 236 LVYEKMAKFFEENPSVARAIMQKALLAAKGREAAKKAKELTRKKDNLSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DPK+ E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++   K+L S+EI  +I
Sbjct: 296 SKDPKECEIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKSHLSKILKSEEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G G+GQ+ 
Sbjct: 356 TAFGCGVGQEF 366


>gi|319958754|gb|ADV90547.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 176/367 (47%), Positives = 251/367 (68%), Gaps = 3/367 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+   F  G+    L V G   + TGT   F+P  +IF+    F+Y
Sbjct: 1   LSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTETIEFDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           DTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+  
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGV 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +L 
Sbjct: 180 FKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV+K L A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL++
Sbjct: 240 ENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLR 496
           F + K R
Sbjct: 359 FTLEKAR 365


>gi|294963300|gb|ADF50137.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 362

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 168/360 (46%), Positives = 250/360 (69%), Gaps = 2/360 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G ++   F  G+    L V G     TGT   F P  +IF+    ++Y
Sbjct: 1   LSTELDVTVYRDGKVHYQEFERGVPKADLKVIGDTE-VTGTTTHFKPDPEIFTETTEYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           DTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI+++V +L+R ++ + + P+ 
Sbjct: 60  DTLATRVRELAFLTKGVKITIEDKREGKERKNDYCYEGGIKSYVEHLNRSREVVHEEPVY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  ++  
Sbjct: 120 IEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYARRNGV 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K+   ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ ++  ++ L  +L 
Sbjct: 180 FKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALEKFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKDPTISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDF 359


>gi|315282117|ref|ZP_07870597.1| DNA topoisomerase 4 subunit B [Listeria marthii FSL S4-120]
 gi|313614234|gb|EFR87898.1| DNA topoisomerase 4 subunit B [Listeria marthii FSL S4-120]
          Length = 526

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 183/527 (34%), Positives = 284/527 (53%), Gaps = 15/527 (2%)

Query: 135 LKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
           L + I R+G  Y+  F +G   D  L   G +   TGT + F P   IF    FNY+TL 
Sbjct: 1   LIVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIFPTTSFNYETLS 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLRE +FL   + I LID+R          ++ G++ FV Y++  K  L       +G 
Sbjct: 60  ERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDVLHPVA-SFEGE 116

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
              I +++A ++NDGY EN+L F NN+  +  G+H SG+++A+TR    Y  +    K+ 
Sbjct: 117 NATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFNDYARRVNLLKEK 176

Query: 314 KRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
            +++ G D REG ++VLSI++P+   +F  QTKEKL + E R  V++ V + L+ +L E+
Sbjct: 177 DKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVVAEHLAYFLAEN 236

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERDPKKSELFL 429
           P  + ++VKK + A   R+AAR+AR+ TR  +K       L GKL     R+P K+EL+L
Sbjct: 237 PETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYL 296

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGK++N E+A+   +L ++EI T+I  +G G+G   
Sbjct: 297 VEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVG-TE 355

Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT---- 545
           FD+    Y K++IMTDAD DGAHI+ LLLTFF+R M  L+  G ++I  PPLY ++    
Sbjct: 356 FDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSG 415

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-DALKIDKLIKDF 604
           + + ++Y   +E L+  +        I+ +     + +       ++ D   + ++  D 
Sbjct: 416 KKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDD 475

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
               ++              +  ++          N L       E+
Sbjct: 476 SARAERRVATLMGDKVEPRRQWIEKHVEFSMEDSQNILENENMMVEE 522



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +     + +    +  ++              ++      S  +          ++   +
Sbjct: 238 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 297

Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +           +    QA++     V N E  +  ++    +++  ++ +       + 
Sbjct: 298 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 357

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
               N D +V           +      F +      + + ++      +  +     K 
Sbjct: 358 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 417

Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
           ++         L   I  IG KG  +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+
Sbjct: 418 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 476

Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795
           ++A+   + LMGD+VEPRR++I+++
Sbjct: 477 ARAERRVATLMGDKVEPRRQWIEKH 501


>gi|259018138|gb|ACV89661.1| DNA gyrase subunit B [Nocardia mexicana]
          Length = 415

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 176/418 (42%), Positives = 248/418 (59%), Gaps = 32/418 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            +SY VSGGLHGVG+SVVNALS+ L+  I   G  +   + +      L V G A   TG
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQADIDYGGYHWTQEYKDAKP-GKL-VQGDATKRTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T + F    DIF    +N++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTIRFWADPDIFETTFYNFETVSRRLQEMAFLNKGLTITLTDQRVTESEITEEVVSDTAE 118

Query: 222 --------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                               T  Y GG+E FV +++R K+ +  + +          +++
Sbjct: 119 APKHAEGEAAAAAEQKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVGFTSKGTGHELEV 178

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K    ++ GDD
Sbjct: 179 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKDKDGNLTGDD 238

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K
Sbjct: 239 IREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNENLAHWFEANPADAKTIVQK 298

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R AAR+AR+L RRK   D+  LPGKLADC  +DP+ SE+++VEGDSAGGSAK 
Sbjct: 299 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGSAKS 358

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 GRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHK 415


>gi|206114363|gb|ACI05263.1| DNA gyrase subunit B [Sphaerotilus montanus]
 gi|291169123|gb|ADD81988.1| DNA gyrase subunit B [Sphaerotilus montanus]
          Length = 397

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 207/382 (54%), Positives = 274/382 (71%), Gaps = 20/382 (5%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGS 164
           SGGLHGVGVS VN LS WL+L ++REG+ Y M F  G+              +P+ V G 
Sbjct: 1   SGGLHGVGVSCVNGLSKWLRLTVRREGHAYFMEFRQGVPQDRVLERRDGFEISPMKVIGE 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             +  GTEV FLP  +IFS  DF+Y+ L  RLRELSFLN+ V+I L+D+R+ +       
Sbjct: 61  T-DKRGTEVHFLPDLEIFSNIDFHYEILSKRLRELSFLNNGVKIRLVDERNGKE--DNFA 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNN 279
           Y GG++ FV ++++ KK L  +    +G +      N+ +++AM+WN+ Y+ENVLCFTNN
Sbjct: 118 YAGGVKGFVEFVNKGKKVLHPNIFHARGDKMSDNQTNVGVEVAMQWNESYNENVLCFTNN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+GLR+A+TR +  Y++    +KK K  + G+D REG   V+S+K+P+P+F
Sbjct: 178 IPQRDGGTHLTGLRAAMTRVMNKYIDDHEIAKKAKVEISGEDMREGLACVVSVKVPEPKF 237

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           SSQTK+KLVSSEVR  VE  V+  L+ WL E+P +AK I  K++DA+  RDAAR+AR++T
Sbjct: 238 SSQTKDKLVSSEVRGPVEDIVSRLLTDWLLENPTDAKTICGKIVDAARARDAARKAREMT 297

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKILN
Sbjct: 298 RRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILN 357

Query: 460 VERARFDKMLSSQEIGTLITAL 481
           VERAR++K+LSS EI TLITAL
Sbjct: 358 VERARYEKLLSSNEILTLITAL 379


>gi|118201790|gb|ABK79708.1| DNA gyrase subunit b [Phaeobacter gallaeciensis]
          Length = 357

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 218/357 (61%), Positives = 275/357 (77%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R+G  +   F  G     L V G  G+ TGTEV FL S+D FS  +++
Sbjct: 1   NALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNLEYS 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I LID+R  E  E+ +FY+GG++ FV YLDR K P+M+ PI
Sbjct: 61  FETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEVPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G +D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 121 YITGDKDDIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ L+ W 
Sbjct: 181 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P +AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|294963294|gb|ADF50134.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 365

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 175/363 (48%), Positives = 253/363 (69%), Gaps = 2/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF     
Sbjct: 1   VNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + 
Sbjct: 60  YDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEE 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  +
Sbjct: 120 PIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARR 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  
Sbjct: 180 KGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALET 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SE
Sbjct: 240 FLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG
Sbjct: 300 LYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIG 359

Query: 487 QDS 489
           +D 
Sbjct: 360 EDF 362


>gi|93004065|emb|CAI94331.2| gyrase B [Helicobacter felis]
          Length = 364

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 163/371 (43%), Positives = 237/371 (63%), Gaps = 7/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I R+G IY   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYRDGQIYRQEFEKGIPTTPLEVVGTTK-KRGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I  V  F+   L+ R +E+++LN+  +I+L     P     +  Y+ G++ F+    +
Sbjct: 60  PEIMEVVHFDSAVLKRRFQEMAYLNN--KITLEFHDQPAQVHESYHYQDGLKQFIIDTQK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              PL+   I      + + +++A+ +N+ Y E    F NNI   +GGTH SG +  L++
Sbjct: 118 --TPLISEIIAFSAQVEGMEVEVALAYNESYEEQTFSFVNNIRTIEGGTHESGFKMGLSK 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I SY+++S    ++  SV+ +D REG ++++S+K+ DP+F  QTK KL SS VR ++  
Sbjct: 176 AILSYIQESN--SREGSSVVQEDVREGLSAIISLKLLDPQFEGQTKAKLGSSFVRPIIAK 233

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  AK IV+KVL A+  R+AA++AR++TR+K  L + +LPGKLADC 
Sbjct: 234 LVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLPGKLADCQ 293

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DPK+ EL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K+L S+EI  +I
Sbjct: 294 SKDPKECELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKSEEIKNMI 353

Query: 479 TALGTGIGQDS 489
           TA G G+G++ 
Sbjct: 354 TAFGCGVGKEF 364


>gi|28411337|dbj|BAC57077.1| gyrase B subunit [Pseudoalteromonas atlantica]
          Length = 352

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 206/354 (58%), Positives = 271/354 (76%), Gaps = 6/354 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I+REG ++E ++  G+ + PL + G A + TGTE+ F PS 
Sbjct: 1   LHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPNAPLAIIGDA-DTTGTELRFWPSG 59

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F+  DF+YD L  RLRELSFLNS V I L D+R  E +     Y GGI+AFV YL+R+
Sbjct: 60  ETFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-EENKTDHFKYDGGIQAFVEYLNRN 118

Query: 240 KKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           K P+ +        R+   IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALT
Sbjct: 119 KTPVHKGVFHFTHEREEDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALT 178

Query: 298 RQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           R + +Y+EK   +KK K   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 RTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  + +  S +L E+P++AKI+V K++DA+  R+AAR+AR++TRRKG +D+A LPGKLA
Sbjct: 239 VEQAMAEKFSDFLLENPMDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLAGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           DC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 DCQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 352


>gi|313844192|ref|YP_004061855.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599577|gb|ADQ91599.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 1074

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 144/685 (21%), Positives = 251/685 (36%), Gaps = 76/685 (11%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLD 50
           +SIQ L  ++ V KRP  Y+G  D  S                       L  +  E+L 
Sbjct: 3   ESIQKLTHIEHVLKRPDSYVGPVDVSSEPYWLLHKTDNQFKKKNINYSPALLKIFDEILV 62

Query: 51  NAIDE--SLEGYADIITVTLNMD-GSCTVSDNGR--GIPTDLHKEEGISAAEVIMTRLHA 105
           NAID           I+V ++ + G+ T+ +NG   GI   +H++EG+   E+    L  
Sbjct: 63  NAIDRNSVHPKSVTSISVGIDKETGAVTIENNGPLGGIGVRMHEKEGVWNPELTFGHLLT 122

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDN-PLVVT 162
              ++    ++ GG +G G  + N  SS   + IK       Y   +   +    P  +T
Sbjct: 123 STNYDDTKKRIVGGRNGYGAKLTNIYSSEFSIVIKDHEAKQTYTQKWEKNMTVCHPPKIT 182

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFN---YDTLQHRLRELS-FLNSSVQISLIDKRSPEP 218
             +G+ +   +TF P    F ++  +   Y   + R+ + +     + ++    +  P+ 
Sbjct: 183 KHSGSTSSVSITFTPDWRRFGMKKMDANIYKIFEKRVWDANICTTPNCKVKFQGEVLPKT 242

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                                    ++    +   R ++ I              + F N
Sbjct: 243 SFEAYA--------------KMHEGVKDVCSVTTDRWSVCI-----GPSENGLEQVSFVN 283

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I    GGTH+  + S L   I   + K       K  +     +  F   +   + +P 
Sbjct: 284 GISTTKGGTHVDHVASLLASGIIEEMAK-------KIKLKPQQVKNTFNIFVKATIENPT 336

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQ K +  S       + F +                I  ++   S  ++    ++  
Sbjct: 337 FSSQVKSECTSKA-----QDFGSKFEPPKSFVKNALKTGIQDELTALSKFKEMKELSKSD 391

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRG 455
             RK  +                  K  L + EGDSA   A  G S   R++  + PLRG
Sbjct: 392 GTRKSKITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRG 451

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K  NV  A   ++ S+QE   L   LG   G+D  D+++LRY +++IMTDAD DG+HI+ 
Sbjct: 452 KCKNVRDASVTQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDGSHIKG 511

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           L+L       PSL+  GF+  +  P+   ++G   +    + +   +  N     +I+ +
Sbjct: 512 LILNMIHYFWPSLLKLGFVVSMVTPIIKASKGSQSKSFYTDSTFRSWYGNGQPGWKIKYY 571

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635
                  S          A +  K I+D     D   +    I   F+ +   +    L 
Sbjct: 572 KGLGTSTSAE--------AREYFKKIQDLTVKFDMDIMSDRSIVLAFDKKKADDRKSWLL 623

Query: 636 SKLANRLNFIAEKSEKSWHGSINNS 660
              A     +        + SI+N 
Sbjct: 624 ESTAKDPKELEVPYGNVRNLSISNF 648


>gi|71833752|emb|CAI94315.1| gyrase B [Helicobacter aurati]
          Length = 366

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 164/371 (44%), Positives = 244/371 (65%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALSS L + I +   IY+  F  GI    L V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSSKLTMTIHKNNKIYKQEFEKGIPTTELEVIGNTK-KHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           S+I  V +F+ +TL  R +E+++L   + I+  D+R     +    ++GG++ F+   D 
Sbjct: 60  SEIMEVTEFHSETLIKRFKEMAYLTHGITITFQDER--CNIKEIFSFEGGLKQFIE--DI 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           ++KP +   +  + S ++  I++A+ +N+ Y E +L F NNI   DGGTH +G R+ L+R
Sbjct: 116 NRKPFISQIVNFEASENDTEIEIALAYNESYDEKLLSFVNNIRTLDGGTHETGFRAGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V+GDD REG  +++S K+ DP+F  QTK KL SS V+ +++ 
Sbjct: 176 AILNYIETNANAREKDVKVLGDDVREGLIAIISAKIMDPQFEGQTKSKLGSSFVKGIIQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + +S + EE+P +AK+I++KVL A+  R+AA+RARDLTR+   + I++LPGK ADC 
Sbjct: 236 LTYEKISKFFEENPNQAKLIMQKVLIAARSREAAKRARDLTRKDNKISISTLPGKFADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP  SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE++R D +L S+EI  +I
Sbjct: 296 SKDPSISEIYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKSRLDTILKSEEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 356 TAFGCGIGDEF 366


>gi|294963285|gb|ADF50130.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 365

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 172/361 (47%), Positives = 252/361 (69%), Gaps = 2/361 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDF 187
           NALS+ L + + R+G I+  ++  G+    L + G   + TGT   F+P  +IF    ++
Sbjct: 2   NALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TGTTTHFVPDPEIFSETTEY 60

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + P
Sbjct: 61  DYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEP 120

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  K 
Sbjct: 121 IYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKK 180

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  +  +
Sbjct: 181 GLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETF 240

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           + E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL
Sbjct: 241 MLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISEL 300

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG+G+
Sbjct: 301 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGMGE 360

Query: 488 D 488
           D
Sbjct: 361 D 361


>gi|119226134|dbj|BAF41046.1| DNA gyrase subunit B [Rhodococcus equi]
 gi|219944542|gb|ACL55045.1| DNA gyrase B subunit [Rhodococcus equi]
          Length = 420

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 174/423 (41%), Positives = 249/423 (58%), Gaps = 35/423 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ +++ I  +G  +  ++ +     PL V G    +TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKP-GPL-VQGEPTTETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------- 222
           T V F    +IF    +N++T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TTVRFWADPEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTDDVVPVTAE 118

Query: 223 ------------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                                     Y GG+E +V +++R K+ +  S +          
Sbjct: 119 APKTATETEEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y +     K     + 
Sbjct: 179 LEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELT 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ ++ W E +P +AK I
Sbjct: 239 GDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTI 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 VTKAVSSAQARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYH
Sbjct: 359 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKLRYH 417

Query: 499 KII 501
           KI+
Sbjct: 418 KIV 420


>gi|71833786|emb|CAI94332.1| gyrase B [Helicobacter felis]
          Length = 364

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 163/371 (43%), Positives = 237/371 (63%), Gaps = 7/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I R+G IY   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYRDGQIYRQEFEKGIPTTPLEVVGTTK-KRGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I  V  F+   L+ R +E+++LN+  +I+L     P     +  Y+ G++ F+    +
Sbjct: 60  PEIMEVVQFDSGVLKRRFQEMAYLNN--KITLEFHDQPAQVHESYHYQDGLKQFIIDTQK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              PL+   I      + + +++A+ +N+ Y E    F NNI   +GGTH SG +  L++
Sbjct: 118 --TPLISEIIAFSAQVEGMEVEVALTYNESYEEQTFSFVNNIRTIEGGTHESGFKMGLSK 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I SY+++S    ++  SV+ +D REG ++++S+K+ DP+F  QTK KL SS VR ++  
Sbjct: 176 AILSYIQESN--SREGSSVVQEDVREGLSAIISLKLLDPQFEGQTKAKLGSSFVRPIIAK 233

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  AK IV+KVL A+  R+AA++AR++TR+K  L + +LPGKLADC 
Sbjct: 234 LVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLPGKLADCQ 293

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DPK+ EL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K+L S+EI  +I
Sbjct: 294 SKDPKECELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKSEEIKNMI 353

Query: 479 TALGTGIGQDS 489
           TA G G+G++ 
Sbjct: 354 TAFGCGVGKEF 364


>gi|324962620|gb|ADY62412.1| gyrase subunit B [Frankia sp. NRRLB-16512]
          Length = 362

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 156/361 (43%), Positives = 217/361 (60%), Gaps = 10/361 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V DNGRGIP  +H  E     EV++T+LHAGGKF+ +SY VSGGLHGVG+S
Sbjct: 1   TLLADGGVRVVDNGRGIPVGMHPTEKRPTVEVVLTKLHAGGKFDGESYAVSGGLHGVGIS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSV 184
           VVNALS+ + + IK +G  +   +       PL        G  TGT VTF    +IF  
Sbjct: 61  VVNALSTKVDVEIKVDGFHWAQRYTAQRP-GPLEKRAPLKRGERTGTTVTFWADPEIFET 119

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            ++ Y+TL  RL+E++FLN  + ISL D+R+ EP E+T  Y+ G+  FV++L+  K P+ 
Sbjct: 120 TEYKYETLYRRLQEMAFLNKGISISLRDERAEEPVEVTFMYENGLADFVTHLNATKDPIH 179

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           ++ I ++     I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT  +  Y 
Sbjct: 180 KTIIALEAKGKGIEAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNVYA 239

Query: 305 EKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           ++    K  K         + G+D REG T+++S+K+ +P+F  QTK KL ++E +  V+
Sbjct: 240 KEQNLLKPVKAGAKNADERLSGEDIREGLTAIISVKLSEPQFEGQTKTKLGNTEAKKFVQ 299

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
                 L  W + + +EA+ IV K LDA   R AAR ARDLTRRKG+L    LPGKLADC
Sbjct: 300 EMCYSALRDWFDANRVEARSIVSKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLADC 359

Query: 418 S 418
            
Sbjct: 360 Q 360


>gi|270017270|gb|ACZ58152.1| DNA gyrase subunit B [Gordonia sp. CC-S5b]
          Length = 414

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 175/416 (42%), Positives = 244/416 (58%), Gaps = 37/416 (8%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G 
Sbjct: 1   AGGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GD 58

Query: 165 AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP------- 216
           A   TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R         
Sbjct: 59  ATRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGD 118

Query: 217 ---------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
                                      +P+  T  Y  G+  ++ +L+R K+ +  + I 
Sbjct: 119 ANGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIG 178

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +   
Sbjct: 179 FSAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKL 238

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E
Sbjct: 239 IKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFE 298

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++
Sbjct: 299 ANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPGKCEVYI 358

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI
Sbjct: 359 VEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI 414


>gi|322493315|emb|CBZ28601.1| DNA topoisomerase ii [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1497

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 136/624 (21%), Positives = 233/624 (37%), Gaps = 66/624 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGD----TDG------------------ESGLHHMIYEVLDNA 52
            Q     D +  RP MYIG     TD                     GL+ +  E+L NA
Sbjct: 9   YQKKTQHDHILTRPDMYIGTIEPVTDDIWVYDDAENIMKQHKCTWTPGLYKIFDEILVNA 68

Query: 53  IDESLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
            D  +    G   +I V +  +    V +NG GIP   H+E  +   E+I   L     +
Sbjct: 69  ADNKVRDPIGQ-TVIRVWM-TENYVRVYNNGEGIPIQKHREHDLWVPEMIFGHLLTSSNY 126

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           + +  KV+GG +G G  + N  S   ++     R    + M + N +L +   +  S  +
Sbjct: 127 DDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQHDDPIIVSCDS 186

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
              T VTF P    F V  F+ D L    R +  +            + +  +  +  + 
Sbjct: 187 ADYTMVTFYPDFARFHVDKFSEDMLLMMKRRVYDVAG---------CTDKTLKCFLNDER 237

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                          + +       SR N   ++ +R ++   + V  F N+I    GGT
Sbjct: 238 IACTTFPEYVDLYPTMGEERKAASYSRVNDRWEVCVRVSNIGPQQV-SFVNSIATTRGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+  +   +  ++    +     KK K  V     R      ++  + +P F SQTKE L
Sbjct: 297 HVKYIMDQIISKVVEQAK-----KKKKTDVKPHMIRPHIFLFVNCLIENPGFDSQTKETL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDAARRARDLTRRKGVL 405
            + + +      + + +  ++    +  + +       +           R        L
Sbjct: 352 NTVKSKFGSTCDLPNSIIDYIMSSGIVERSVEMANSKIAKEMASKMRSSDRKQIMGIPKL 411

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVER 462
           D A+  G       +   +  L L EGDSA      G   + R+   + PLRGK LNV  
Sbjct: 412 DDANEAGG------KYSHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVRE 465

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A   K+ + +EI  ++  +G  I Q   + + LRY  ++IM+D D DG+HI+ LL+ F  
Sbjct: 466 ASLKKLAACEEIQCVMKIMGLDIRQKYENTDGLRYGHLMIMSDQDHDGSHIKGLLINFIH 525

Query: 523 RQMPSLIH-NGFLYIIKPPLYGIT--------RGKSLQYVKDEESLEDYLINQSLSEEIE 573
              PSL+   GFL     P+            +  S   + D    +  + +   + +I 
Sbjct: 526 CFWPSLLRVPGFLQEFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIR 585

Query: 574 LF--CDSKGVISKNDLRNFIDDAL 595
            +    + G     +    ID   
Sbjct: 586 YYKGLGTSGAEEGREYFENIDRHR 609


>gi|6729176|dbj|BAA89721.1| DNA gyrase subunit B [Couchioplanes caeruleus]
          Length = 396

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 177/400 (44%), Positives = 259/400 (64%), Gaps = 12/400 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALS+ + + I + GN+Y   +       PL   G A + TG
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGNVYRQKYNASKP-GPLEK-GEATDTTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMF 224
           + V F P   IF   +F++ T+  R++E++FLN  + I+L+D+R         PR +T  
Sbjct: 59  STVQFWPDPTIFETVEFDFQTIYRRIQEMAFLNKGLTINLVDERPVSLDEEGNPRRVTFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y+ GI  FV +L+  K P+ +S I  +     + +++++AM+WN+ Y E+V  F N I  
Sbjct: 119 YENGIADFVRHLNHTKSPIHKSVIEFEAEANDEGMALEIAMQWNESYGESVYTFANTINT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y  +    K     + G+D REG  +++S+K+ +P+F  Q
Sbjct: 179 HEGGTHEEGFRAALTSIVNRYGAEKKFLK-SDEKLSGEDIREGLAAIISVKLANPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +++++  V+   N+ ++ W + +P +AK I+ K   A+  R AA++AR L RRK
Sbjct: 238 TKTKLGNTDMKGFVQKVANEQIADWFDRNPADAKQIITKASQAARARIAAQQARKLARRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
            +L+  S+PGKLADC   DP+ SELF+VEGDSAGGSAKQGR  + QAILP+RGKILNVE+
Sbjct: 298 SLLESGSMPGKLADCQSTDPRVSELFIVEGDSAGGSAKQGRDSQIQAILPIRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AR D++L + E+ +LITALGTGI  D FDI KLRYHK+++
Sbjct: 358 ARIDRVLKNNEVQSLITALGTGI-HDEFDIAKLRYHKVVL 396


>gi|110624483|dbj|BAE98188.1| DNA gyrase B subunit [Shewanella colwelliana]
          Length = 367

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 210/370 (56%), Positives = 285/370 (77%), Gaps = 4/370 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ I+R+G +YE  + +G+ + P+   G A   TGTE+ F PS + F+ 
Sbjct: 1   VSVVNALSEKLQMTIRRDGKLYEQFYTHGVPNEPIKAIGDAT-TTGTEIRFWPSGETFTD 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+ +K P+ 
Sbjct: 60  VEFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKTPVN 117

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 KEVFHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNTY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +++   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 178 MDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEQ 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 238 LGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPA 297

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 357

Query: 484 GIGQDSFDIN 493
           GIG+D +D +
Sbjct: 358 GIGRDEYDPD 367


>gi|154340639|ref|XP_001566276.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063595|emb|CAM39778.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1501

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 135/624 (21%), Positives = 232/624 (37%), Gaps = 66/624 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGD----TDG------------------ESGLHHMIYEVLDNA 52
            Q     + +  RP MYIG     TD                     GL+ +  E+L NA
Sbjct: 9   YQKKTQHEHILTRPDMYIGTIEPVTDDIWVYDDAENIMKQRKCTWTPGLYKIFDEILVNA 68

Query: 53  IDESLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
            D  +    G   +I V +  D    V +NG GIP   H+E  +   E+I   L     +
Sbjct: 69  ADNKVRDPLGQ-TVIRVWMTED-YVRVYNNGEGIPIQRHREHDLWVPEMIFGHLLTSSNY 126

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           + +  KV+GG +G G  + N  S   ++     R    + M + N +L +   +     +
Sbjct: 127 DDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQHDDPIIVPCES 186

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
              T VTF P    F V  F+ D L    R +  +            + +  +  +  + 
Sbjct: 187 ADYTMVTFYPDFARFHVDKFSEDILLMMKRRVYDVAG---------CTDKTLKCFLNDER 237

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                          + +       SR N   +L +R ++   + V  F N+I    GGT
Sbjct: 238 IACTTFPEYVDLYPTMGEERKAASYSRANDRWELCVRVSNIGPQQV-SFVNSIATTRGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+  +   +  ++    +     KK K  V     R      ++  + +P F SQTKE L
Sbjct: 297 HVKYIMDQIVTKVVEQAK-----KKKKTDVKSHMIRPHIFLFVNCLIDNPSFDSQTKETL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDAARRARDLTRRKGVL 405
            + + +      + + +  ++    +  + +       +           R        L
Sbjct: 352 NTVKSKFGSTCDLPNSIVDYIMNSGIVERSVEMANSKIAKEMASKIKSSDRKQIMGIPKL 411

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVER 462
           D A+  G       +   +  L L EGDSA      G   + R+   + PLRGK LNV  
Sbjct: 412 DDANEAGG------KHGHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVRE 465

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A   K+ + +EI  ++  +G  I Q   + + LRY  ++IM+D D DG+HI+ LL+ F  
Sbjct: 466 ASLKKLAACEEIQCVMKIMGLDIRQKYENTDGLRYGHLMIMSDQDHDGSHIKGLLINFIH 525

Query: 523 RQMPSLIH-NGFLYIIKPPLYGIT--------RGKSLQYVKDEESLEDYLINQSLSEEIE 573
              P+L+   GFL     P+            +  S   + D    +  + +   + +I 
Sbjct: 526 CFWPNLLRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIR 585

Query: 574 LF--CDSKGVISKNDLRNFIDDAL 595
            +    + G     +    ID   
Sbjct: 586 YYKGLGTSGAEEGREYFENIDRHR 609


>gi|118201814|gb|ABK79720.1| DNA gyrase subunit b [Ruegeria pomeroyi]
          Length = 357

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 213/357 (59%), Positives = 268/357 (75%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+  FS  D+ 
Sbjct: 1   NALSDWLELRIWRHGKEHVARFERGDTVEHLRVVGECGDRTGTEVRFLASTTTFSNLDYV 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I LID+R  E  E  +FY+GG+  FV YLDR K P+M +PI
Sbjct: 61  FETLEKRLRELAFLNSGVRIILIDERPAERIETELFYEGGVREFVKYLDRSKSPVMPAPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 121 YFKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ VN+ L+ W 
Sbjct: 181 IAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVNEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPNVAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|71833768|emb|CAI94323.1| gyrase B [Helicobacter bizzozeronii]
          Length = 366

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 161/371 (43%), Positives = 238/371 (64%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L + IKR G I+   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSTKLIMTIKRGGQIFRQEFAKGIPTTPLEVVGTTKEQ-GTSIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I  V  F+   L+ R +E+++LN  V I    +  P   + T  Y  G++ F+   D 
Sbjct: 60  PSIMEVVAFDSSVLKKRFQEMAYLNHGVTIHF--EDQPNQIKETYHYTEGLKQFIL--DN 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K PL+   I      +++ +++A+ +N+GY E +  F N+I   +GGTH SG R  L+R
Sbjct: 116 NKNPLISEVIAFSAQAEDMEVEIALAYNEGYSEQMFSFVNSIRTPEGGTHESGFRMGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y++++  +++ +  V+ +D +EG  +V+S ++ +P+F  QTK KL SS VR VV  
Sbjct: 176 AILNYIQENANAREKEAGVVQEDIKEGLLAVISARILEPQFEGQTKAKLGSSFVRPVVAK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  A+ I++K L A+  R+AA++A++LTR+K  L + +LPGKLADC 
Sbjct: 236 LVYEKMAKFFEENPSVARAIMQKALLAAKGREAAKKAKELTRKKDNLSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DPK+ E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++   K+L S+EI  +I
Sbjct: 296 SKDPKECEIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKSHLGKILKSEEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G G+GQ+ 
Sbjct: 356 TAFGCGVGQEF 366


>gi|322500572|emb|CBZ35649.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1498

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 135/624 (21%), Positives = 233/624 (37%), Gaps = 66/624 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGD----TDG------------------ESGLHHMIYEVLDNA 52
            Q     D +  RP MYIG     TD                     GL+ +  E+L NA
Sbjct: 9   YQKKTQHDHILTRPDMYIGTIEPVTDDIWVYDDAENTMKQRKCTWTPGLYKIFDEILVNA 68

Query: 53  IDESLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
            D  +    G   +I V +  +    V +NG GIP   H+E  +   E+I   L     +
Sbjct: 69  ADNKVRDPIGQ-TVIRVWM-TENYVRVYNNGEGIPIQKHREHDLWVPEMIFGHLLTSSNY 126

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           + +  KV+GG +G G  + N  S   ++     R    + M + N +L +   V     +
Sbjct: 127 DDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWANNMLQHDDPVIVPCDS 186

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
              T VTF P   +F V  F+ D L    R +  +            + +  +  +  + 
Sbjct: 187 ADYTMVTFYPDFALFHVDKFSEDMLLMMKRRVYDVAG---------CTDKTLKCFLNDER 237

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                          + +       SR N   ++ +R ++   + V  F N+I    GGT
Sbjct: 238 IACTTFPEYVDLYPTMGEERKAASYSRVNDRWEVCVRVSNIGPQQV-SFVNSIATTRGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+  +   +  ++    +     KK K  V     R      ++  + +P F SQTKE L
Sbjct: 297 HVKYIMDQIISKVVEQAK-----KKKKTDVKPHMIRPHIFLFVNCLIENPGFDSQTKETL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDAARRARDLTRRKGVL 405
            + + +      + + +  ++    +  + +       +           R        L
Sbjct: 352 NTVKSKFGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMASKMRSSDRKQIMGIPKL 411

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVER 462
           D A+  G       +   +  L L EGDSA      G   + R+   + PLRGK LNV  
Sbjct: 412 DDANEAGG------KHSHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVRE 465

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A   K+ + +EI  ++  +G  I Q   + + LRY  ++IM+D D DG+HI+ LL+ F  
Sbjct: 466 ASLKKLAACEEIQCVMKIMGLDIRQKYENADGLRYGHLMIMSDQDHDGSHIKGLLINFIH 525

Query: 523 RQMPSLIH-NGFLYIIKPPLYGIT--------RGKSLQYVKDEESLEDYLINQSLSEEIE 573
              P+L+   GFL     P+            +  S   + D    +  + +   + +I 
Sbjct: 526 CFWPNLLRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIR 585

Query: 574 LF--CDSKGVISKNDLRNFIDDAL 595
            +    + G     +    ID   
Sbjct: 586 YYKGLGTSGAEEGREYFENIDRHR 609


>gi|93004072|emb|CAI94342.2| gyrase B [Helicobacter trogontum]
          Length = 368

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 156/371 (42%), Positives = 231/371 (62%), Gaps = 3/371 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I +   IY   F  GI    L + G      GT + F P 
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIHKNNKIYRQEFEKGIPVTDLEIIGETK-KHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I  V +F+ + L  R +E+++L   ++I   D+R           +GG+  F+  +++
Sbjct: 60  PEIMEVTEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHF--EGGLSQFIEDINK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                         +  +  I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 118 KNLITQILSFEATENEHDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V+GDD REG  ++++ K+ +P+F  QTK KL SS V+ +V+ 
Sbjct: 178 AILNYIETNANAREKDVKVLGDDVREGLVAIIAAKIMEPQFEGQTKGKLGSSFVKGIVQK 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + ++ + EE+P +AK+I++KVL A+  R+AA+RARDLTR+   + +++LPGK ADC 
Sbjct: 238 LTYEKMAKFFEENPSQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQ 297

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R D +L S+EI  +I
Sbjct: 298 SKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMI 357

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 358 TAFGCGIGDEF 368


>gi|71833800|emb|CAI94339.1| gyrase B [Helicobacter salomonis]
          Length = 365

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 238/371 (64%), Gaps = 6/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I REG IY   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYREGQIYRQEFEKGIPTTPLEVVGTTK-KRGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I  V  F+   L+ R +E+++LN+  +I+L     P     +  Y+ G++ F+    +
Sbjct: 60  PQIMEVVAFDSAILKRRFQEMAYLNN--KITLEFHDQPAQVHESYHYQDGLKQFIIDSQK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              PL+   I      + + +++A+ +N+ Y E    F NNI   +GGTH SG +  L++
Sbjct: 118 --TPLISEIIAFNAQVEGMEVEVALAYNESYEEQTFSFVNNIRTTEGGTHESGFKMGLSK 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+++S  S++   SV+ +D REG ++++S+K+ DP+F  QTK KL SS VR +V  
Sbjct: 176 AILNYIQESGSSRES-ASVVQEDVREGLSAIISLKLLDPQFEGQTKSKLGSSFVRPIVAK 234

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  AK IV+KVL A+  R+AA++AR++TR+K  L + +LPGKLADC 
Sbjct: 235 LVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLPGKLADCQ 294

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP++SEL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K+L S+EI  +I
Sbjct: 295 SKDPRESELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKSEEIKNMI 354

Query: 479 TALGTGIGQDS 489
           TA G G+G++ 
Sbjct: 355 TAFGCGVGKEF 365


>gi|62085688|gb|AAX63236.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 423

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 183/426 (42%), Positives = 251/426 (58%), Gaps = 38/426 (8%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++       PL   G A
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKP-GPLEK-GDA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V F P  DIF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDA 118

Query: 217 --------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 NGDEDAPATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 SAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKIIVKK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D F
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEF 417

Query: 491 DINKLR 496
           DI KLR
Sbjct: 418 DIAKLR 423


>gi|71833804|emb|CAI94341.1| gyrase B [Helicobacter salomonis]
          Length = 365

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 238/371 (64%), Gaps = 6/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I REG IY   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYREGQIYRQEFEKGIPTTPLEVVGTTK-KRGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I  V  F+   L+ R +E+++LN+  +I+L     P     +  Y+ G++ F+    +
Sbjct: 60  PQIMEVVAFDSAVLKRRFQEMAYLNN--KITLEFHDQPAQVHESYHYQDGLKQFIVDSQK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              PL+   I      + + +++A+ +N+ Y E    F NNI   +GGTH SG +  L++
Sbjct: 118 --TPLISEIIAFSAQVEGMEVEVALAYNESYEEQTFSFVNNIRTTEGGTHESGFKMGLSK 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+++S  S++   SV+ +D REG ++++S+K+ DP+F  QTK KL SS VR +V  
Sbjct: 176 AILNYIQESGSSRES-ASVVQEDVREGLSAIISLKLLDPQFEGQTKSKLGSSFVRPIVAK 234

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  AK IV+KVL A+  R+AA++AR++TR+K  L + +LPGKLADC 
Sbjct: 235 LVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLPGKLADCQ 294

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP++SEL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K+L S+EI  +I
Sbjct: 295 SKDPRESELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKSEEIKNMI 354

Query: 479 TALGTGIGQDS 489
           TA G G+G++ 
Sbjct: 355 TAFGCGVGKEF 365


>gi|188037348|gb|ACD46293.1| DNA gyrase subunit B [Providencia alcalifaciens]
          Length = 270

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 158/273 (57%), Positives = 198/273 (72%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++
Sbjct: 1   IHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSS 205
           E  + +G    PL V G   + TGT V F PS D F  V +F YD L  RLRELSFLNS 
Sbjct: 61  EQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGVTEFEYDILAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I LIDKR  +       Y+GGI+AFV YL R+K P+  S       +D I ++++M+W
Sbjct: 120 VSIRLIDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGIGVEVSMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y+EK    KK K S  GDD REG
Sbjct: 178 NDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMEKEGYQKKTKVSATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|71834043|dbj|BAE16966.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 362

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 212/365 (58%), Positives = 279/365 (76%), Gaps = 4/365 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F PS D FS 
Sbjct: 1   VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSD 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 60  VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 117

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY
Sbjct: 118 KDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 178 MENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEK 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 238 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 297

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 357

Query: 484 GIGQD 488
           GIG+D
Sbjct: 358 GIGRD 362


>gi|62085678|gb|AAX63231.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 424

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 181/427 (42%), Positives = 252/427 (59%), Gaps = 39/427 (9%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  +Y VSGGLHGVG+SVVNALS+ ++L I  +G  +E ++       PL   G A 
Sbjct: 1   GKFDSDAYAVSGGLHGVGISVVNALSTKVELEIANDGFNWEQTYSYAKP-GPLEK-GDAT 58

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS---------- 215
             TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R           
Sbjct: 59  RKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 216 -------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 GDDEAAPTTEVAETVKTETEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 NAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S+K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D F
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEF 417

Query: 491 DINKLRY 497
           DI+KLRY
Sbjct: 418 DISKLRY 424


>gi|71833770|emb|CAI94324.1| gyrase B [Helicobacter bizzozeronii]
          Length = 366

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 162/371 (43%), Positives = 239/371 (64%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L + IKR G I+   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSTKLVMTIKRGGQIFRQEFAKGIPTTPLEVVGTTKEQ-GTSIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I  V  F+   LQ R +E+++LN  V I    +  P   + T +Y  G++ F+   D 
Sbjct: 60  PSIMEVVAFDSSVLQKRFQEMAYLNHGVTIHF--EDQPNQIKETYYYTEGLKQFIL--DT 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K PL+   I      +++ +++A+ +N+GY E +  F N+I   +GGTH SG R  L+R
Sbjct: 116 NKNPLISEVIAFSAQAEDMEVEIALAYNEGYSEQMFSFVNSIRTPEGGTHESGFRMGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y++++  +++ +  V+ +D +EG  +V+S ++ +P+F  QTK KL SS VR VV  
Sbjct: 176 AILNYIQENANAREKEAGVVQEDIKEGLLAVISARILEPQFEGQTKAKLGSSFVRPVVAK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  A+ I++K L A+  R+AA++A++LTR+K  L + +LPGKLADC 
Sbjct: 236 LVYEKMAKFFEENPSVARAIMQKALLAAKGREAAKKAKELTRKKDNLSVGTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DPK+ E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++   K+L S+EI  +I
Sbjct: 296 SKDPKECEIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKSHLGKILKSEEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G G+GQ+ 
Sbjct: 356 TAFGCGVGQEF 366


>gi|294786989|ref|ZP_06752243.1| DNA gyrase subunit B [Parascardovia denticolens F0305]
 gi|315226630|ref|ZP_07868418.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
           denticolens DSM 10105]
 gi|294485822|gb|EFG33456.1| DNA gyrase subunit B [Parascardovia denticolens F0305]
 gi|315120762|gb|EFT83894.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
           denticolens DSM 10105]
          Length = 787

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 101/255 (39%), Positives = 145/255 (56%), Gaps = 36/255 (14%)

Query: 1   MSDNIQNS---------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51
           M+   +N           Y+A S+ +L+GLDAV+KRP MYIG TD + GL H ++E++DN
Sbjct: 1   MATKKKNKTESQAAAGGDYNAASLSVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDN 59

Query: 52  AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           ++DE+L G  + I VTL+ DGS +V+DNGRGIP D+  + G+S  EV++T+LHAGGKF  
Sbjct: 60  SVDEALAGACNHIIVTLHKDGSISVADNGRGIPVDVEPKTGLSGVEVVLTKLHAGGKFGN 119

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------- 155
            +Y   GGLHGVG SVVNALSS L + + R+G  Y M F  G                  
Sbjct: 120 SAYNAVGGLHGVGSSVVNALSSRLGVEVDRDGKTYRMEFHQGHPGTYDDPDPQNPSPESP 179

Query: 156 --------DNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSS 205
                      L + G  +G  TGT + +    +IF+    FNY+ L  R+R+ SFL   
Sbjct: 180 FTRTRKNKPTELRMVGKYSGKKTGTRIRYWADPEIFNSTAVFNYEQLIDRVRQTSFLVPG 239

Query: 206 VQISLIDKRSPEPRE 220
           ++I +ID++  +   
Sbjct: 240 LRIEVIDEKVDDNTY 254



 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 194/371 (52%), Gaps = 33/371 (8%)

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----------------- 253
             ++   PR    F++GG+  FV +L       +     I+G                  
Sbjct: 320 RLEKHRHPRVQEFFHQGGVVDFVDFLSSG--EPVSDIWHIEGDSTYQEETQQVDSNGDLH 377

Query: 254 ----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF- 308
               + +  +D+A+RW + Y   +  F N +    GG H+ G  +++T+ I   VE +  
Sbjct: 378 ATMVQRDCHVDIALRWINDYETVLRSFVNVVETPGGGMHVDGFLNSITKNIRKTVEANAR 437

Query: 309 ----GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                 K     +  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +   
Sbjct: 438 KLKVNLKDPHMKIERDDVLAGIVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRICDKQF 497

Query: 365 SAWLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
              +       K     +++K+      R  AR+ +++TRRK  L+ AS+P KL+DC   
Sbjct: 498 GEMITGSKRGFKEQSGRVLEKIAGEMHARVQARKTKEVTRRKNALESASMPAKLSDCQPG 557

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +   +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   ++L+++E   +I  
Sbjct: 558 NDDIAELFIVEGDSALGTAKAARNSMFQALLPIRGKILNVQKASVAQILANKECSAIIQV 617

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           +G G G   FD+ + RY KII+MTDADVDGAHIRTLLLT F+R M  L+  G +Y   PP
Sbjct: 618 VGAGSGAT-FDLGQARYDKIIMMTDADVDGAHIRTLLLTLFYRYMRPLVEAGHVYAAVPP 676

Query: 541 LYGITRGKSLQ 551
           L+ I      +
Sbjct: 677 LHRIALAGKHK 687



 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLL 763
              G+ +       L   +  + ++GI     +QRYKGLGEM+A QL +TT++P TR L 
Sbjct: 685 KHKGEFVYTYSEEELSSRLTQLEKQGIDYNEDIQRYKGLGEMDADQLADTTMDPRTRLLR 744

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+++ DA  A ++F  LMGDEV PRR+FI +N+
Sbjct: 745 RIRLDDARHASEIFELLMGDEVPPRRQFIVDNA 777


>gi|6729172|dbj|BAA89719.1| DNA gyrase subunit B [Actinoplanes regularis]
          Length = 396

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 176/400 (44%), Positives = 262/400 (65%), Gaps = 12/400 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            ++YKVSGGLHGVGVSVVNALS+ + ++I + G ++   +   +    L + G     TG
Sbjct: 1   NQAYKVSGGLHGVGVSVVNALSTRMAVKIHKNGFVWRQKYNASVP-EEL-IKGETTESTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMF 224
           + V F P  +IF   +F++ T+  RL+E++FLN ++ I+  D+R+       EPR++T  
Sbjct: 59  STVQFWPDPNIFETVEFDFQTIYRRLQEMAFLNRALTINFTDERTEFADENGEPRKVTFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y GGI  FV +L+  K  + ++ I      +   + +++AM+WN+ Y E+V  F N I  
Sbjct: 119 YAGGISDFVRHLNATKSAIHKTVIEFGTEDNEAGMGVEIAMQWNESYGESVYTFANRINT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y  +    K   + + G+D REG  +++S+ + +P+F  Q
Sbjct: 179 HEGGTHEEGFRAALTTIVNKYGIEKKFLK-SDQKLSGEDIREGLAAIISVTLREPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +++++S V+   N+ L+ W + +P +AK+I+ K   A+  R AA++AR L RRK
Sbjct: 238 TKTKLGNTDMKSFVQRVANEQLADWFDRNPADAKLIITKADQAARARIAAQQARKLARRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
            +L+  S+PGKLADC   DP+++ELF+VEGDSAGGSAKQGRS + QAILP+RGKILNVE+
Sbjct: 298 SLLESGSMPGKLADCQSTDPRETELFIVEGDSAGGSAKQGRSSKYQAILPIRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AR D++L + E+  LITALGTGI  D FDI KLRYHKII+
Sbjct: 358 ARIDRVLKNNEVQALITALGTGI-HDEFDIGKLRYHKIIL 396


>gi|319958726|gb|ADV90533.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 368

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 177/370 (47%), Positives = 257/370 (69%), Gaps = 3/370 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF     ++Y
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTVYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  +   
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGI 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  +L 
Sbjct: 180 FKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLRYHK 499
           F++ K RYH 
Sbjct: 359 FNLEKARYHN 368


>gi|165968976|gb|ABY76044.1| topoisomerase IV subunit ParE [Neochlamydia hartmannellae]
          Length = 497

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 159/533 (29%), Positives = 247/533 (46%), Gaps = 45/533 (8%)

Query: 74  CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS 133
            ++ D GRGIP      E +S       +++ G K+N   ++ S GL+GVG   VNALSS
Sbjct: 4   VSIRDYGRGIPLGKV-IECVS-------QINTGAKYNDDVFQFSVGLNGVGTKAVNALSS 55

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
           +  ++  R+G  +E  F  GIL N     G      GT + F+P ++IF    F  + + 
Sbjct: 56  YFLVKSHRDGRYFEAEFSRGILQN--QKEGPTKESNGTFIEFVPDTEIFKKFRFQKEYII 113

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RL   ++LN+ ++I   D+            K G+   ++        L +        
Sbjct: 114 KRLWHYAYLNTGLKIRFNDEEIES--------KNGLLDLLNSEVVTDDRLYEPLHH---- 161

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                ++ A      Y E    F N     DGGTHLS  R  + + +  Y +K+      
Sbjct: 162 -RGKMLEFAFLHTQSYGETYFSFVNGQYTADGGTHLSAFREGILKGVNEYSKKN------ 214

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
                G D REG    + +K+ DP F SQTK KL ++E+R  V   V D +   L ++P 
Sbjct: 215 ---FQGVDVREGIVGTILVKVKDPLFESQTKNKLGNNELRGPVVQEVKDAVIDLLYKNPT 271

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS------ERDPKKSEL 427
            A  I+++++    +R           ++    I+    KL DC           ++S +
Sbjct: 272 TANQIIERIVFNEKLRKELANV-KKEAKEKQKKISFKIPKLRDCKYHFQDGTEHGERSMI 330

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FL EGDSA  S    R    QA+  LRGK LNV   + D++  ++E+  L++AL      
Sbjct: 331 FLTEGDSASASVVAARDPLTQAVFSLRGKPLNVHGMKLDQLYKNEEMFNLMSAL-----N 385

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
              DIN+LRY KI++ TDADVDG HIR LL+TFF      L+ NG L+I++ PL+ +   
Sbjct: 386 VEDDINQLRYQKIVLATDADVDGMHIRNLLITFFLTYFEGLVLNGHLHILETPLFKVRNK 445

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           +   Y  +EE  +  +       EI  F    G IS N+ + FI   +++  +
Sbjct: 446 EKTFYCYNEEERDQAIEKLKKGVEITRF-KGLGEISPNEFKQFISKDIRLIPV 497



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 2/135 (1%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +  + QAV S      +   + +    K     N ++  + +     +    I++     
Sbjct: 346 RDPLTQAVFSLRGKPLNVHGMKLDQLYKNEEMFNLMSALNVEDDINQLRYQKIVLA-TDA 404

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
            V    +      F        + +  +      +  +                  I  +
Sbjct: 405 DVDGMHIRNLLITFFLTYFEGLVLNGHLHILETPLFKVRNKEKTFYCYNEEERDQAIEKL 464

Query: 730 GRKGISMQRYKGLGE 744
            +KG+ + R+KGLGE
Sbjct: 465 -KKGVEITRFKGLGE 478


>gi|157871926|ref|XP_001684512.1| DNA topoisomerase ii [Leishmania major]
 gi|68127581|emb|CAJ05684.1| DNA topoisomerase ii [Leishmania major strain Friedlin]
          Length = 1497

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 137/624 (21%), Positives = 233/624 (37%), Gaps = 66/624 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGD----TDG------------------ESGLHHMIYEVLDNA 52
            Q     D +  RP MYIG     TD                     GL+ +  E+L NA
Sbjct: 9   YQKKTQHDHILTRPDMYIGTLEPVTDDIWVYDDAENSMKQRKCTWTPGLYKIFDEILVNA 68

Query: 53  IDESLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
            D  +    G   +I V +  +    V +NG GIP   H+E  +   E+I   L     +
Sbjct: 69  ADNKVRDPIGQ-TVIRVWM-TESYVRVYNNGEGIPIQKHREHDLWVPEMIFGHLLTSSNY 126

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           + +  KV+GG +G G  + N  S   ++     R    + M + N +L +   V     +
Sbjct: 127 DDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQHDDPVIVPCDS 186

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
              T VTF P   +F V  F  D L    R +           I   + +  +  +  + 
Sbjct: 187 ADYTMVTFYPDFALFHVDKFTEDMLLMMKRRVYD---------IAGCTDKTLKCFLNDER 237

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                          + +       SR N   ++ +R ++   + V  F N+I    GGT
Sbjct: 238 IACTTFPEYVDLYPTMGEERKAASYSRVNDRWEVCVRVSNIGPQQV-SFVNSIATTRGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+  +   +T ++    +     KK K  V     R      ++  + +P F SQTKE L
Sbjct: 297 HVKYIMDQITSKVMEQAK-----KKKKTDVKPHMIRPHIFLFVNCLIENPGFDSQTKETL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDAARRARDLTRRKGVL 405
            + + +      + + +  ++    +  + +       +           R        L
Sbjct: 352 NTVKSKFGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMASKMRSSDRKQIMGIPKL 411

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVER 462
           D A+  G       +   +  L L EGDSA      G   + R+   + PLRGK LNV  
Sbjct: 412 DDANEAGG------KHSHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVRE 465

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A   K+ + +EI  ++  +G  I Q   + + LRY  ++IM+D D DG+HI+ LL+ F  
Sbjct: 466 ASLKKLAACEEIQCVMKIMGLDIRQTYENSDGLRYGHLMIMSDQDHDGSHIKGLLINFIH 525

Query: 523 RQMPSLIH-NGFLYIIKPPLYGIT--------RGKSLQYVKDEESLEDYLINQSLSEEIE 573
              P+L+   GFL     P+            +  S   + D    +  + +   + +I 
Sbjct: 526 CFWPNLLRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIR 585

Query: 574 LF--CDSKGVISKNDLRNFIDDAL 595
            +    + G     +    ID   
Sbjct: 586 YYKGLGTSGAEEGREYFENIDRHR 609


>gi|324962626|gb|ADY62415.1| gyrase subunit B [Frankia sp. NRRLB-16386]
          Length = 362

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 154/361 (42%), Positives = 215/361 (59%), Gaps = 10/361 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V DNGRGIP  +H  E     EV++T+LHAGGKF+ +SY VSGGLHGVG+S
Sbjct: 1   TLLADGGVRVVDNGRGIPVGMHPTEKRPTVEVVLTKLHAGGKFDGESYAVSGGLHGVGIS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFLPSSDIFSV 184
           VVNALS+ + + IK +G ++   +       PL        G  TGT VTF   ++IF  
Sbjct: 61  VVNALSTKVDVEIKVDGFVWAQKYTAQRP-GPLEKGAPLKRGQRTGTTVTFWADAEIFET 119

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            ++ Y+TL  RL+E++FLN  + I+L D+R  EP E+T  Y+ G+  FV++L+  K P+ 
Sbjct: 120 TEYKYETLYRRLQEMAFLNKGISITLRDERPEEPAEVTFMYENGLADFVTHLNATKDPIH 179

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           ++ I ++     I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT  +  Y 
Sbjct: 180 KTIIALEAKGKGIEAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNVYA 239

Query: 305 EKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           +     K  K         + GDD REG T+++S+K+ +P+F  QTK KL ++E +  V+
Sbjct: 240 KDQNLLKPVKAGSKSGDERLSGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEAKKFVQ 299

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
                 L  W   + +E + IV K LDA   R AAR ARDLTRRKG+L    LPGKL+DC
Sbjct: 300 EMCYSALGDWFHGNRVEGRAIVGKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLSDC 359

Query: 418 S 418
            
Sbjct: 360 Q 360


>gi|270017260|gb|ACZ58147.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 424

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 181/427 (42%), Positives = 252/427 (59%), Gaps = 39/427 (9%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I  +G  +E ++       PL   G A
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIANDGFNWEQTYSYAKP-GPLEK-GDA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS--------- 215
              TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 216 --------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
                                      +P+  T  Y  G+  ++ +L+R K+ +  + I 
Sbjct: 119 NGDDEAAPTTEVAETVKTETEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIG 178

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +   
Sbjct: 179 FNAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKL 238

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K+    + GDD REG  +V+S+K+ DP+F  QTK KL ++E++  V+   N+ L  W E
Sbjct: 239 IKEKDGKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFE 298

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++
Sbjct: 299 ANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYI 358

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D 
Sbjct: 359 VEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDE 417

Query: 490 FDINKLR 496
           FDI+KLR
Sbjct: 418 FDISKLR 424


>gi|212659898|gb|ACJ37007.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 264

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 139/263 (52%), Positives = 184/263 (69%), Gaps = 2/263 (0%)

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+  SYKVSGGLHGV
Sbjct: 2   ILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 61

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I R+G  Y+  ++ G    PL          GT + F P+ +IFS
Sbjct: 62  GVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTTLRFKPAKEIFS 120

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+Y+ L  RLRELSFLNS +++SLID+R  E R     Y+GGI +FV +L + K PL
Sbjct: 121 DVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVEHLAQLKTPL 179

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+ALTR + +Y
Sbjct: 180 HSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALTRTLGNY 239

Query: 304 VEKSFGSKKDKRSVIGDDCREGF 326
           +E++  +++ K +  GDD REG 
Sbjct: 240 IEQNGIARQAKITFSGDDMREGM 262


>gi|188037317|gb|ACD46279.1| DNA gyrase subunit B [Providencia rustigianii]
          Length = 271

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 157/273 (57%), Positives = 197/273 (72%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++
Sbjct: 1   IHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSS 205
           E  + +G    PL V G   + TGT V F PS D F  + +F Y+ L  RLRELSFLNS 
Sbjct: 61  EQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGITEFEYEILAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I LIDKR  +       Y GGI+AFV YL R+K P+  S       +D I +++AM+W
Sbjct: 120 VSIRLIDKRDGKE--DHFHYDGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGIGVEVAMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y+EK    KK K S  GDD REG
Sbjct: 178 NDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMEKEGYQKKTKVSATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|118201766|gb|ABK79696.1| DNA gyrase subunit b [Leisingera methylohalidivorans DSM 14336]
          Length = 357

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 219/357 (61%), Positives = 275/357 (77%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R+G  +   F  G     L V G  G+ TGTEV FL S+D FS  D+ 
Sbjct: 1   NALSDWLELRIWRDGKEHIARFERGETAKHLEVVGDCGDRTGTEVRFLASTDTFSNLDYI 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I LID+R  E  EI +FY+GG++ FV YLDRHK P+M++P+
Sbjct: 61  FETLEKRLRELAFLNSGVRIILIDERPAERLEIELFYEGGVKEFVKYLDRHKTPVMETPV 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G +D I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 121 YIIGEKDEIVVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQTSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES V + LS W 
Sbjct: 181 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVGEKLSEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P +AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPGQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|9632132|ref|NP_048939.1| hypothetical protein PBCV1_A583L [Paramecium bursaria Chlorella
           virus 1]
 gi|2447074|gb|AAC96932.1| PBCV-1 DNA topoisomerase II [Paramecium bursaria Chlorella virus 1]
          Length = 1061

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 174/846 (20%), Positives = 291/846 (34%), Gaps = 142/846 (16%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDNA 52
              Q L   + V  RP  YIG    ++                     L  +  E++ N+
Sbjct: 2   SRYQKLTQREHVLARPDTYIGSVAPQTKNEWVYVDGKIIRKDVTYSPALLKIFDEIITNS 61

Query: 53  IDESLEGYA-------DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
            D               ++ V ++ + S +V ++G  IP + H  E     E+I   L A
Sbjct: 62  AD------CYNRDKKLTVLKVCID-EKSVSVHNDGCNIPIEKHDVEKCYIPELIFGHLLA 114

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           G  F+    +   G +G+G    N  S    + I      Y+ S+ N +         + 
Sbjct: 115 GENFDDTEQRTGAGRNGIGSKATNIFSKKFDVEICDGKKKYKQSWENNMSVMSKPKVTTC 174

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREIT 222
             D+    TF P  + F +  F+ DT+     R+ +++ + + V++ L  KR        
Sbjct: 175 SKDSYITTTFFPDFERFGIDSFDDDTMSIMVRRVYDMAAVLNKVKVMLNGKRLEIKNTED 234

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
            F                    ++  +        + D+A+  +D +    + F N++  
Sbjct: 235 YF--------------SLYVGNKTETKRAFEHTPENWDVAVSCSDEFTP--VSFVNSV-V 277

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++ +  A+ +           + K K  V     +      ++  + +P F SQ
Sbjct: 278 TRGGTHVNAVTDAVAK------AVVEAAAKKKIVVKPMTVKGRMFVFVNATVVNPTFDSQ 331

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L S   R  +           L +  ++   +   ++D   ++      +      
Sbjct: 332 TKEILTSRNARVTLSDTFVKKAVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKSRVSGI 391

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKI 457
             L+ A+  G          K   L L EGDSA      G +  GR R    + PLRGK+
Sbjct: 392 PKLNDAAWAG------TNHSKMCTLILTEGDSAATLAIAGLSVVGRER--YGVFPLRGKL 443

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNV  A    +  ++EI  L   LG   G+   D + LRY  ++IMTDADVDG HI  L+
Sbjct: 444 LNVRDASVASITKNEEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHISGLV 503

Query: 518 LTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           + FF    PSL+   GFL     P+    +GK ++        ED++      +  + + 
Sbjct: 504 MNFFHSCFPSLLEIPGFLKKFITPIVVAKKGKDVREFYSLPDYEDWV------KTTKDYS 557

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
             +    K    +   DA      +K        T     +I   FN ++  E      +
Sbjct: 558 KYQIKYYKGLGTSSSTDAKHYFSNLKTLMKTFTWTSDSGELIDRSFN-KTRAEDRKEWMT 616

Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696
                     +K E      I+   IL  R         V++G         Y     N 
Sbjct: 617 AYEPGNQLDHKKPEVPVPDFIDKELILFSRYDLERSIPSVVDGFKPSQRKVLYCAFKRNL 676

Query: 697 IEENYLTILSLICNGDKIKITGPCSL----------------LDTIFSIGRKGISMQ--- 737
             +  +   S           G  SL                ++ +   G+ G  +Q   
Sbjct: 677 TSDVKVAQFSGYVAEHSAYHHGEVSLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQGGK 736

Query: 738 -----RY---KGLGEMNASQLWETTLNPDTR--------SLLRVKITDASQADDLFSRLM 781
                RY   K              LNP TR        +LL+    D            
Sbjct: 737 DHASARYIFTK--------------LNPKTRQVFVDTDDNLLKYLYDD------------ 770

Query: 782 GDEVEP 787
           GD++EP
Sbjct: 771 GDKIEP 776


>gi|25990063|gb|AAN74971.1| DNA gyrase subunit B [Entomoplasma lucivorax]
          Length = 393

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 173/397 (43%), Positives = 250/397 (62%), Gaps = 10/397 (2%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTE 172
           YKVSGGLHGVG SVVNALS ++ + I+REG  + M F +G      L + G + N TGT 
Sbjct: 1   YKVSGGLHGVGASVVNALSLYVDVVIEREGKKFHMLFSDGGTAQTELAIIGES-NKTGTT 59

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           V F P  +IF     F+Y T+++++++L++LN  ++ISL D+R  +   +   +  GI  
Sbjct: 60  VRFKPDPEIFKETVTFDYTTIRNKVKQLAYLNKGLKISLNDERINKS--VDFHFPNGIVD 117

Query: 232 FVSYLDRHKKPLMQSPIRIQG----SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           ++   +  K  +  +   + G       +I +++A+++N  Y+EN++ F NNI   +GG 
Sbjct: 118 YIREENETKAKINPTIFYVDGKEAGDEGDIEVEIALQYNSEYNENLITFVNNINTHEGGA 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  GLR AL R I  Y EK     K  +    DD +EG   +LSI+  DP+F  QTK KL
Sbjct: 178 HEDGLRQALVRIINRYAEKVAQQNKQPQKFSWDDIKEGMICILSIRHTDPQFEGQTKTKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            + + + VV++ +      +L E+P +AK I+ K ++A   R AA+RAR+ TRRKG LD 
Sbjct: 238 ANPDAKRVVDAILGKSFEEFLFENPNDAKAILDKNVNAQKARIAAQRAREETRRKGALDT 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            SLPGKLADC   D   SEL+LVEGDSAGGSAK GR+R  QAILPLRGK+LNVER +  +
Sbjct: 298 FSLPGKLADCESNDSSISELYLVEGDSAGGSAKTGRNRHFQAILPLRGKVLNVERVQEVR 357

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
             ++ EI +++TA+GTGI +D  D++K+RY KI+IMT
Sbjct: 358 AFANTEIKSIVTAVGTGIKEDI-DLSKIRYGKIVIMT 393


>gi|221060064|ref|XP_002260677.1| DNA topoisomerase II [Plasmodium knowlesi strain H]
 gi|193810751|emb|CAQ42649.1| DNA topoisomerase II, putative [Plasmodium knowlesi strain H]
          Length = 1506

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 129/686 (18%), Positives = 246/686 (35%), Gaps = 97/686 (14%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS N        +  Q    ++ +  RP  YIG  +  +                     
Sbjct: 1   MSKNKSI----EERYQKKSQIEHILLRPDTYIGSVEMHTQLLWIWNKERNRMVQKNITYV 56

Query: 40  -GLHHMIYEVLDNAID------ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEE 91
            GL+ +  E++ NA D      E  E     I + +N +    +V ++G GIP ++HKE 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKEQKKISVYNDGEGIPVEIHKEM 116

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI---KREGNIYEM 148
            I    +I   L     ++    +++GG +G G  + N  S    ++     R    ++M
Sbjct: 117 NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFVVQCGDSSR-KKEFKM 175

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
            + + +      +  +        VTF P    F + + + D    L  R+ +L+   S 
Sbjct: 176 VWTDNMSKFSEPIIKNYNGKDFVRVTFKPDLAKFGMTEMDDDIESLLCKRVYDLAGTCS- 234

Query: 206 VQISLIDKRSPEPREITMFYKG-------------------------------------- 227
           V++ L   R       +                                           
Sbjct: 235 VRVYLNGNRLAIKDFKSYVDLYLKDNAGVSPGKGGANNNANANGNADGSANQDTQNPDVS 294

Query: 228 -----GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                G          +          ++        ++ +   DG     + F N+I  
Sbjct: 295 QSQEPGEGTPTKSNAANGTQNNDEEEIVKIHEKQHRWEIVVSKTDGSQFQQVSFVNSICT 354

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG+H++ +   L   + S  +K+    K    +     +      ++  + +P F SQ
Sbjct: 355 TKGGSHVNYIVEQL---LNSLSKKANAKNKGGMEIKSGHIKNHLWVFVNCLIVNPTFDSQ 411

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L +  V+   +  ++D     + +  + +  I+      + V    +     ++ +
Sbjct: 412 TKETLTTKPVKFGSKCILSDKTINGVLKSSILSN-ILLWAQAKAQVELRKKMKAGSSKAR 470

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKI 457
             +          D   +  +   L L EGDSA      G +  GR +    + PL+GK+
Sbjct: 471 ERIIGIPKLEDANDAGSKHSQDCTLILTEGDSAKTSCLAGLSIVGRDK--YGVFPLKGKL 528

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGI-GQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           LNV  A F +++ ++EI  +   +G  I  ++  DI  LRY  ++IMTD D DG+HI+ L
Sbjct: 529 LNVRDASFKQLMDNKEIQNIFKIMGLDITDKNKEDIKGLRYGSLMIMTDQDYDGSHIKGL 588

Query: 517 LLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           L+    +  PSL+ H GFL     P+  + +G            E++  + +L      +
Sbjct: 589 LINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGNQEHSFFTIAEYEEWKESTNLVGWKIKY 648

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLI 601
               G  +  + + +  D      + 
Sbjct: 649 YKGLGTSTDKEFKQYFSDIKNHKIMF 674


>gi|188037326|gb|ACD46283.1| DNA gyrase subunit B [Providencia rettgeri]
 gi|188037458|gb|ACD46343.1| DNA gyrase subunit B [Providencia rettgeri]
          Length = 270

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 156/273 (57%), Positives = 198/273 (72%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++
Sbjct: 1   IHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSS 205
           E  + +G    PL V G   + TGT V F PS D F  V +F YD L  RLRELSFLNS 
Sbjct: 61  EQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGVTEFEYDVLAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I L+DKR  +       Y+GGI+AFV YL R+K P+  S       +D I ++++M+W
Sbjct: 120 VSIKLVDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGIGVEVSMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y+EK    KK K +  GDD REG
Sbjct: 178 NDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMEKEGYQKKSKVNATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|119226130|dbj|BAF41044.1| DNA gyrase subunit B [Gordonia amarae]
          Length = 423

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 182/426 (42%), Positives = 250/426 (58%), Gaps = 38/426 (8%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SY VSGGLHGVG+SVVNALS+ ++L IKR+G  +  +++N      L   G+A   TGT
Sbjct: 1   DSYAVSGGLHGVGISVVNALSTKVELEIKRDGFQWSQTYLNSEPQT-LHQ-GAASRKTGT 58

Query: 172 EVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLI------------------- 211
              F P   IF+    FN +T+  RL+E++FLN  + I+L                    
Sbjct: 59  TTRFWPDPAIFTETTRFNAETVARRLQEMAFLNKGLTITLTDNRPQAVEAPGDPNGDGDT 118

Query: 212 --------------DKRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN 256
                          K + + +  T  Y  G+  ++ +   R K P+ QS I   G    
Sbjct: 119 PGGTELAEVVQSPAQKATAKSKTRTYHYADGLIDYIKHINKRSKNPIHQSVIGFSGKGTG 178

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             +++AM+WNDGY E++  F N I   +GGTH  G R+ALT  +  Y       K+    
Sbjct: 179 HEVEIAMQWNDGYSESIHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLIKEKDTK 238

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L+ W E +P EAK
Sbjct: 239 LTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQKICNEHLAHWFESNPAEAK 298

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
            I+KK +D++  R AARRARD+ RRK   DI  LPGKLADC   DP   E+++VEGDSAG
Sbjct: 299 NIIKKAVDSAQARAAARRARDMVRRKTATDIGGLPGKLADCRSNDPALCEVYIVEGDSAG 358

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLR
Sbjct: 359 GSAKSGRDLMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLR 417

Query: 497 YHKIII 502
           YHKI++
Sbjct: 418 YHKIVL 423


>gi|82409038|gb|ABB73301.1| gyrase beta subunit [Salinispora pacifica]
          Length = 388

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 179/392 (45%), Positives = 253/392 (64%), Gaps = 9/392 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLH VGVSVVNALS+ + + I+++G  +  S+ +     PL   G   + TG+ V+F
Sbjct: 1   VSGGLHRVGVSVVNALSTRMAVEIQKDGYFWRQSYTDSKP-TPLEK-GEPTDATGSAVSF 58

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIE 230
            P   +F    F++ T+  RL+E++FL+  + I  +D+R  E      RE+T  Y+GGI 
Sbjct: 59  WPDPTVFDTVSFDFQTIYRRLQEMAFLSRGLTIHFLDERIDEGDDSKMREVTFCYQGGIA 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +L+  K  + +S +      D +S+++AM+WN+ Y E+V  F NNI   +GGTH  
Sbjct: 119 DFVRHLNASKTSIHKSVVEFGTDEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEE 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALT  I  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++
Sbjct: 179 GFRSALTSVINRYGA-EKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNT 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            V+S V+   N+ L  WL+ +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+
Sbjct: 238 PVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSM 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC   DP++ E+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L 
Sbjct: 298 PGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 357

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           + E+  LITALGTGI  D FDI KLRYHKI++
Sbjct: 358 NNEVQALITALGTGI-HDDFDIEKLRYHKIVL 388


>gi|4001682|dbj|BAA35070.1| DNA gyrase subunit B [Micromonospora aurantiaca]
          Length = 396

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 178/400 (44%), Positives = 260/400 (65%), Gaps = 12/400 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y VSGGLHGVGVSVVNALSS + + I + GN++   +       PL   G   + TG
Sbjct: 1   NKAYAVSGGLHGVGVSVVNALSSKMFVEINKSGNVWRQHYTASKP-GPLEK-GETTDKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMF 224
           + V F P   +F   +F++ T+  RL+E++FLN  + I L D R+       EPR +T  
Sbjct: 59  SMVQFWPDPTVFETVEFDWQTIYRRLQEMAFLNRGLTIKLTDLRTEHADENGEPRTVTFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y+ GI  FV +L+  K P+ ++ +  Q   +   +++++AM+WN+ Y E+V  F N I  
Sbjct: 119 YENGIADFVRHLNATKNPIHKTVVEFQAEDNEARMAVEIAMQWNESYGESVYTFANRINT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y +      K  +++ G+D REG  +++S+ + +P+F  Q
Sbjct: 179 HEGGTHEEGFRAALTGVVNRYGKDKK-LLKGDQNLSGEDIREGLAAIISVTLANPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +++++S V+   N+ L+ W + +P EAK I+ K   A+  R AA++AR L RRK
Sbjct: 238 TKTKLGNTDMKSFVQRVANEQLADWFDRNPAEAKQIITKADQAARARIAAQQARKLARRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
            +L+  S+PGKLADC   DP++SELF+VEGDSAGGSAKQGR+   QAILP+RGKILNVE+
Sbjct: 298 SLLESGSMPGKLADCQSTDPRESELFIVEGDSAGGSAKQGRNSRIQAILPIRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AR D++L + E+  LITALGTGI +D FD+ KLRYHKI++
Sbjct: 358 ARIDRVLKNNEVQALITALGTGIHED-FDVAKLRYHKIVL 396


>gi|319958724|gb|ADV90532.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 367

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 177/369 (47%), Positives = 257/369 (69%), Gaps = 3/369 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF     ++Y
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETIVYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  +   
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGI 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  +L 
Sbjct: 180 FKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLRYH 498
           F++ K RYH
Sbjct: 359 FNLEKARYH 367


>gi|61676022|gb|AAX51676.1| gyrase subunit B [Neochlamydia hartmannellae]
          Length = 241

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/214 (47%), Positives = 142/214 (66%), Gaps = 8/214 (3%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIGDT   +GLH ++YEV+DN IDE++ GY   I VTL+ DGS T+ DNGRGIP + 
Sbjct: 1   PGMYIGDTSS-NGLHQLVYEVVDNCIDEAMAGYCTAIYVTLHKDGSATIEDNGRGIPVEK 59

Query: 88  HKEE------GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141
           H++E       +SA EV+MT LHAGGKF++ +YKVSGGLHGVGVS V ALS  + +++ +
Sbjct: 60  HEKESLKQGRDVSALEVVMTILHAGGKFDKNTYKVSGGLHGVGVSCVCALSKKMVVQVFK 119

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
              ++E+ F  G +  P+ + G      GT +TF P  +I +V +F+YD L  RLREL+F
Sbjct: 120 NSKVHEIEFSQGHVKKPIQIIGETT-KRGTRITFWPDDEIMNVVEFDYDILAKRLRELAF 178

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LN  + I   D+R+ E  ++   Y GG+ +FVSY
Sbjct: 179 LNKGINIYFHDERNDEKDDVHFCYSGGLSSFVSY 212


>gi|71833802|emb|CAI94340.1| gyrase B [Helicobacter salomonis]
          Length = 365

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 238/371 (64%), Gaps = 6/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I REG IY   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYREGQIYRQEFEKGIPTTPLEVVGTTK-KRGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I  V  F+   L+ R +E+++LN+  +I+L     P     +  Y+ G++ F+    +
Sbjct: 60  PQIMEVIAFDSAVLKRRFQEMAYLNN--KITLEFHDQPAQVHESYHYQDGLKQFIIDSQK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              PL+   I      + + +++A+ +N+ Y E    F NNI   +GGTH SG +  L++
Sbjct: 118 --TPLISEIIAFNAQVEGMEVEVALAYNESYEEQTFSFVNNIRTTEGGTHESGFKMGLSK 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+++S  S++   SV+ +D REG ++++S+K+ DP+F  QTK KL SS VR +V  
Sbjct: 176 AILNYIQESGSSRES-ASVVQEDVREGLSAIISLKLLDPQFEGQTKSKLGSSFVRPIVAK 234

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  AK IV+KVL A+  R+AA++AR++TR+K  L + +LPGKLADC 
Sbjct: 235 LVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLPGKLADCQ 294

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP++SEL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K+L S+EI  +I
Sbjct: 295 SKDPRESELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKSEEIKNMI 354

Query: 479 TALGTGIGQDS 489
           TA G G+G++ 
Sbjct: 355 TAFGCGVGKEF 365


>gi|188037337|gb|ACD46288.1| DNA gyrase subunit B [Providencia vermicola]
          Length = 270

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 158/273 (57%), Positives = 198/273 (72%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L IKR+G ++
Sbjct: 1   IHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIKRDGKVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSS 205
           E  + +G    PL V G   + TGT V F PS D F  V +F YD L  RLRELSFLNS 
Sbjct: 61  EQIYKHGEPQGPLSVVGET-DQTGTRVRFWPSMDTFKGVTEFEYDVLAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I LIDKR  +       Y+GGI+AFV YL R+K P+  S       +D I ++++M+W
Sbjct: 120 VSIKLIDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGIGVEVSMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y+EK    KK K +  GDD REG
Sbjct: 178 NDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMEKEGYQKKSKVNATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|212715647|ref|ZP_03323775.1| hypothetical protein BIFCAT_00547 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661014|gb|EEB21589.1| hypothetical protein BIFCAT_00547 [Bifidobacterium catenulatum DSM
           16992]
          Length = 783

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 145/247 (58%), Gaps = 29/247 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ +    +Y A S+ +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G 
Sbjct: 4   MAKD--KDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGV 60

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  SGGL
Sbjct: 61  CNHIIVTLHSDGSVEVADNGRGIPVDIEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGL 120

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------D 156
           HGVG SVVNALSS L + + R+G  + MSF  G                           
Sbjct: 121 HGVGSSVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYTDVDSEHPSPDAPFKRTRKNRP 180

Query: 157 NPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             L + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+ 
Sbjct: 181 TELEIIGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDEN 240

Query: 215 SPEPREI 221
            PE  + 
Sbjct: 241 IPETGDE 247



 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 138/466 (29%), Positives = 219/466 (46%), Gaps = 37/466 (7%)

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS------------------ 258
             R     + GG+  FV YL +     +    R+ G    +                   
Sbjct: 322 HARIEEFCHTGGVRDFVDYLSKG--EAVSDIWRVTGEDTYVEETQAVGDGGELHAQKVTR 379

Query: 259 ---IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-----GS 310
              +D+AMRW +GY   +  F N +    GGTH+ G    +T+QI   +E +        
Sbjct: 380 KCAVDIAMRWTNGYDTTMRSFVNVVETPGGGTHVDGYLLGMTKQIRKAIEDNARKLKVNL 439

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K     V  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +      +  
Sbjct: 440 KDSNMKVERDDILSGLVAVITVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDKQFGEMITG 499

Query: 371 HPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
                K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   +   +E
Sbjct: 500 SKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAE 559

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G G G
Sbjct: 560 LFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSG 619

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
              FDI + RY+K+I+MTDADVDGAHIR LLLT F+R M  LI +G +Y   PPL+ I  
Sbjct: 620 AS-FDIEQARYNKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIAL 678

Query: 547 G--KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
              +  +Y+      E       L ++   + +           +    A          
Sbjct: 679 TGARKGEYIYTYSDDELAGKLAELDKKRIGYNEDIQRYKGLGEMDADQLADTTMDPRTRM 738

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                    EQA  S +F+     ++    A  + N  +F   K +
Sbjct: 739 LRRIRMEDAEQA--SRIFSLLMGDDVPPRKAFIVENADDFDRSKID 782



 Score =  138 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 682 RKGEYIYTYSDDELAGKLAELDKKRIGYNEDIQRYKGLGEMDADQLADTTMDPRTRMLRR 741

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA QA  +FS LMGD+V PR+ FI EN+
Sbjct: 742 IRMEDAEQASRIFSLLMGDDVPPRKAFIVENA 773


>gi|281203022|gb|EFA77223.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1265

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 137/696 (19%), Positives = 241/696 (34%), Gaps = 91/696 (13%)

Query: 12  ADSIQILKGLDAVKKRPSMYIG---------------------------------DTDGE 38
            D  Q     + V  RP  YIG                                  TD  
Sbjct: 93  EDVYQKKTPTEHVLLRPDSYIGTIQTIEDDMWMLSKSIFGSTKNDSQSTSSKKLKSTDST 152

Query: 39  -------------------SGLHHMIYEVLDNAIDESLEGYA-DIITVTLNM-DGSCTVS 77
                               GL  +  E+L NA D          I V L+   G  +V 
Sbjct: 153 ATVATVDPLYIHSVKAKYIPGLLKIFDEILVNAADNKQRDNTMSYIKVELDPVSGVLSVE 212

Query: 78  DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137
           ++G+GIP  +HK E +   E++M  L +G  FN    KV GG +G G  + N  S   K+
Sbjct: 213 NDGKGIPVAMHKTENVYVPEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKHFKV 272

Query: 138 RIKR--EGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQ----DFNYD 190
                  G  Y  S+ + +      +       +  T + F P  + F ++    +    
Sbjct: 273 ETYDKSNGLRYSQSWSDNMSVRHDPIIEKVRLSSEFTRIEFKPDLEKFHLKSLVGEDIIY 332

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            ++ R+ +++  N  +++SL       P +        +        + K          
Sbjct: 333 LMERRVYDIAGCNPDIKVSLN----GTPIKYDFQSYAKLYEHHLSRSQEKNLSNPQDNLT 388

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
            G       ++ +  +D      + F N+I    GG+H++ +   + R I   ++K    
Sbjct: 389 FGQ-IGDRWNIGIGTSDTGQFTQVSFVNSINTLKGGSHVNFIADQVIRYIAERIKKK--- 444

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
                 V   + +   +  ++  + +P F SQTKE L +  +       V + +     +
Sbjct: 445 -HPDLEVRPMNIKHHLSLFVNCLIENPSFDSQTKETLTTKPINFGSTPEVPEKMLEQFVK 503

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLT-----RRKGVLDIASLPGKLADCSERDPKKS 425
                  I   VL         + +   +     +    LD A+  G          ++ 
Sbjct: 504 QSKIIDKIAGWVLMRQQAELVYQSSTRTSKSTLAKSIPKLDDANWAGGP------KSRQC 557

Query: 426 ELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
            L + EGDSA      G +  GR R    + PLRGK+LNV      ++LS++EI  L   
Sbjct: 558 TLIITEGDSAKSLAVAGMSVLGRDR--FGVFPLRGKLLNVRDVAPKQLLSNEEINNLTNI 615

Query: 481 LGTGIGQDSFDI---NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537
           LG    +   D    ++LRY K++IMTD D DG+HI+ L + F     P L+   FL   
Sbjct: 616 LGLSHKRRYHDEQSLSELRYGKVLIMTDQDNDGSHIKGLFINFIHYFWPELLKADFLEEF 675

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
             P+  +++G   +          +  +                +  N      +    +
Sbjct: 676 VTPIIKVSKGADRKSFFTINDYLKWQRSLPDQSLKGWNIKYYKGLGTNTSAEAKEYFSNL 735

Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            K +  F  N +   +     +     +  Q +  +
Sbjct: 736 KKHVIKFKWNDESDHLIGMAFNKDAADKRQQWLMAA 771


>gi|118201802|gb|ABK79714.1| DNA gyrase subunit b [Roseovarius nubinhibens]
          Length = 357

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 214/357 (59%), Positives = 267/357 (74%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F  G     L V G A    GTEV FL S+D FS  +++
Sbjct: 1   NALSDWLELRIWRNGKEHVARFERGDTAEHLKVVGDANGRKGTEVRFLASTDTFSNLEYS 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  EP E  + Y GG++ FV YLDRHK P++  PI
Sbjct: 61  FETLERRLRELAFLNSGVRIILRDERPAEPLETELHYDGGVKEFVKYLDRHKSPMIPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 121 FITGERDEIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRTINNYAQSSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  +N+ L+ W 
Sbjct: 181 IAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLMNEKLNEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAK+IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+ELF
Sbjct: 241 EENPNEAKMIVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSEKDPSKTELF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|324962622|gb|ADY62413.1| gyrase subunit B [Frankia sp. CN3]
          Length = 362

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 159/367 (43%), Positives = 219/367 (59%), Gaps = 22/367 (5%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V DNGRGIP  +H  E     EV++T+LHAGGKF+ +SY VSGGLHGVG+S
Sbjct: 1   TLLADGGVRVVDNGRGIPVGMHPTEKRPTVEVVLTKLHAGGKFDGESYAVSGGLHGVGIS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSF--------INGILDNPLVVTGSAGNDTGTEVTFLPS 178
           VVNALS+ L + IK +G ++  ++          G    PL         TGT VTF   
Sbjct: 61  VVNALSTRLDVEIKVDGFVWAQTYTAQRPGRLEKG---APLKR----SERTGTTVTFWAD 113

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           S+IF   ++ Y+TL  RL+E++FLN  + ISL D+R  EP E+T  Y+ G+  FV++L+ 
Sbjct: 114 SEIFETLEYKYETLYRRLQEMAFLNKGISISLRDERGEEPVEVTFMYEHGLADFVTHLNA 173

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K+P+ ++ I ++     I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT 
Sbjct: 174 TKEPIHKTIIALEAKGKGIEAELAMQWNGGYNESVYTFANTINTHEGGTHEEGFRAALTS 233

Query: 299 QITSYVEKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            +  Y +     K  K         + GDD REG T+++S+K+ +P+F  QTK KL ++E
Sbjct: 234 AVNIYAKDQNLLKPVKAGAKNADERLSGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTE 293

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            +  V+      L  W + + +EA+ IV K LDA   R AAR ARDLTRRKG+L    LP
Sbjct: 294 AKKFVQEMAYSALRDWFDANRVEARAIVSKALDAQRARIAARAARDLTRRKGLLGGTGLP 353

Query: 412 GKLADCS 418
           GKLADC 
Sbjct: 354 GKLADCQ 360


>gi|300492620|gb|ADK23799.1| DNA gyrase subunit B [Alteromonas sp. P127]
          Length = 355

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 213/358 (59%), Positives = 270/358 (75%), Gaps = 4/358 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS LKLRI+R G  +E  + +G+   PL VTG   + TGT + F PSSD F+   ++
Sbjct: 1   NALSSRLKLRIRRGGKAHEQEYHHGVPQAPLAVTGDT-DKTGTMIRFWPSSDTFTDTLYH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I L D+R  +       Y+GGI+AFV YL+  K P+ Q   
Sbjct: 60  YDILAKRLRELSFLNSGVSIRLKDERDGKE--DHFMYEGGIKAFVEYLNEKKTPVHQKVF 117

Query: 249 RIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                  D I++++AM+WND + ENV CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK 
Sbjct: 118 HFSSEQEDGIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKE 177

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVR  VES +N+ L+ +
Sbjct: 178 GLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRPAVESAMNEKLAEF 237

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P E+KII  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL
Sbjct: 238 LLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSEL 297

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI
Sbjct: 298 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 355


>gi|225351335|ref|ZP_03742358.1| hypothetical protein BIFPSEUDO_02928 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157679|gb|EEG70962.1| hypothetical protein BIFPSEUDO_02928 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 776

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 144/247 (58%), Gaps = 29/247 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+      +Y A S+ +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G 
Sbjct: 14  MAK--YKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGV 70

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            + I VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  SGGL
Sbjct: 71  CNHIVVTLHSDGSVEVADNGRGIPVDIEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGL 130

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------D 156
           HGVG SVVNALSS L + + R+G  + MSF  G                           
Sbjct: 131 HGVGSSVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYTDADPEHPSPDAPFKRTRKNRP 190

Query: 157 NPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             L + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+ 
Sbjct: 191 TELEIIGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDEN 250

Query: 215 SPEPREI 221
            PE  + 
Sbjct: 251 IPETGDE 257



 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 139/466 (29%), Positives = 218/466 (46%), Gaps = 37/466 (7%)

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS------------------ 258
             R     + GG++ FV YL +     + +  RI G    +                   
Sbjct: 315 HSRIEEFCHTGGVKDFVDYLSKG--EAVSAIWRITGEDTYVEETQAVGDGGELHAQKVTR 372

Query: 259 ---IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-----GS 310
              +D+AMRW +GY   +  F N +    GGTH+ G    LT+QI   +E +        
Sbjct: 373 NCAVDIAMRWTNGYDTTMRSFVNVVETPGGGTHVDGYLLGLTKQIRKAIEDNARKLKVNL 432

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K     V  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +      +  
Sbjct: 433 KDSNMKVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDRQFGEMITG 492

Query: 371 HPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
                K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   +   +E
Sbjct: 493 SKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAE 552

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G G G
Sbjct: 553 LFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSG 612

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
              FDI + RY+K+I+MTDADVDGAHIR LLLT F+  M  LI  G +Y   PPL+ I  
Sbjct: 613 AS-FDIEQARYNKVIMMTDADVDGAHIRILLLTLFYCYMRPLIEYGHVYAAVPPLHRIAL 671

Query: 547 GK--SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
                 +Y+      E       L ++   + +           +    A          
Sbjct: 672 TGAHKGEYIYTYSDDELAGKLADLDKKHISYNEDIQRYKGLGEMDADQLADTTMDPRTRM 731

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                    EQA  S +F+     ++    A  + N  +F   K +
Sbjct: 732 LRRIRMEDAEQA--SQIFSLLMGDDVPPRKAFIVENADDFDRSKID 775



 Score =  138 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K IS    +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 675 HKGEYIYTYSDDELAGKLADLDKKHISYNEDIQRYKGLGEMDADQLADTTMDPRTRMLRR 734

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA QA  +FS LMGD+V PR+ FI EN+
Sbjct: 735 IRMEDAEQASQIFSLLMGDDVPPRKAFIVENA 766


>gi|281331924|emb|CAZ39957.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 371

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 205/358 (57%), Positives = 261/358 (72%), Gaps = 3/358 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQIGPST-KRGTTLRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV 
Sbjct: 60  WPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R 
Sbjct: 119 HLAQLKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 ALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 238

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES     L  +L+E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKL
Sbjct: 239 XVESAFGQRLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAGLPGKL 298

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           ADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S 
Sbjct: 299 ADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASD 356


>gi|71833825|emb|CAI94344.1| gyrase B [Helicobacter sp. 'Flexispira str. FL56']
          Length = 368

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 156/371 (42%), Positives = 233/371 (62%), Gaps = 3/371 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I ++  IY+  F  GI    L + G      GT + F P 
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKDNKIYKQEFEKGIPVTELEIVGETK-KHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I  + +F+ + L  R +E+++L   ++I   D+R           +GG+  F+  +++
Sbjct: 60  PEIMEITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHF--EGGLSQFIEDINK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                         +  +  I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 118 KTLITQILSFEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V+GDD REG  ++++ K+ DP+F  QTK KL SS V+ +V+ 
Sbjct: 178 AILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQK 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + ++ + EE+P +AK+I++KVL A+  R+AA+RARDLTR+   + +++LPGK ADC 
Sbjct: 238 LTYEKMAKFFEENPNQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQ 297

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R D +L S+EI  +I
Sbjct: 298 SKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMI 357

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 358 TAFGCGIGDEF 368


>gi|319958716|gb|ADV90528.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|319958718|gb|ADV90529.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 365

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 175/367 (47%), Positives = 255/367 (69%), Gaps = 3/367 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF+    ++Y
Sbjct: 1   LSTELDVTVHRDGKIHRQTYKRGVPVADLEVIGETDH-TGTTTHFVPDPEIFTETTVYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRAKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  K   
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGL 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  +  ++ 
Sbjct: 180 IKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAAMETFML 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLR 496
           F++ K R
Sbjct: 359 FNLEKAR 365


>gi|319958730|gb|ADV90535.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 175/367 (47%), Positives = 251/367 (68%), Gaps = 3/367 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    F+Y
Sbjct: 1   LSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           DTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+  
Sbjct: 120 IEGEKDGITIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGV 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +L 
Sbjct: 180 FKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL++
Sbjct: 240 ENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLR 496
           F + K R
Sbjct: 359 FTLEKAR 365


>gi|10281012|dbj|BAB13747.1| type II DNA topoisomerase [Kluyveromyces marxianus]
          Length = 777

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 130/695 (18%), Positives = 247/695 (35%), Gaps = 57/695 (8%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEG 92
            +   GL  +  E+L NA D  +       I VT+N  +    V ++G+GIP ++H++EG
Sbjct: 9   VNIVPGLFKIFDEILVNAADNKVRDPSMKKIDVTINQEENLIEVRNDGKGIPVEIHEKEG 68

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSF 150
           I   E+I   L     ++    KV+GG +G G  V N  S+   L      +G  Y   +
Sbjct: 69  IYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKVCNIFSTEFILETADPSKGQKYVQKW 128

Query: 151 INGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSV 206
            N +         S     + T+V+F      F+++  + D    ++ R+ +++     V
Sbjct: 129 ENNMSVCHPPSITSYKRGPSYTKVSFRADLQRFNMEKLDDDIVGVMRRRVYDINGSVRDV 188

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ--------GSRDNIS 258
            +SL  K                      L+R ++         +          + N  
Sbjct: 189 NVSLNGKPLKIKNFKNYVELYLKSLEKIKLNRLQELTNPDEPAQEPTNIPAILYEKINDR 248

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
            ++A   ++   + +  F N+I    GGTH++ +   + ++++  ++K       K+S+ 
Sbjct: 249 WEIAFAVSENSFQQI-SFVNSIATTSGGTHVNYVTDQIVKKVSDRLKKQ------KKSIK 301

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
               +      ++  + +P F+SQTKE+L +      V+ F +         + +    +
Sbjct: 302 PFQIKNNMFIFINCLIENPAFTSQTKEQLTTR-----VKDFGSKCEVPNDFVNKVMKTDL 356

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA--- 435
             ++ D +      +  +    RK  +              ++  K  L L EGDSA   
Sbjct: 357 ATRIFDIADENAEKQLKKTDGSRKNRITEYPKLEDANKAGTKEGYKCTLVLTEGDSALSL 416

Query: 436 --GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
              G A  GR        PLRGK+LNV  A  D++  + EI  +   +G    +   D  
Sbjct: 417 AVAGLAVVGRD--YYGCFPLRGKMLNVRDATPDQITKNAEIQAIKKIMGLQHKKRYEDAT 474

Query: 494 KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYV 553
            LRY  I IMTD D DG+HI+ L++ F     P L+         P          ++  
Sbjct: 475 SLRYGHITIMTDQDHDGSHIKGLIINFLESSFPGLLD-------IPGFLIEFITPIIKIT 527

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                 +          E     +S     K      +  + + +         +     
Sbjct: 528 ITRPKKQTISFYNMPDYEKWREEESHKYTWKQKYYKGLGTSTQQE------AREYFSQLD 581

Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQE 673
                      +  Q I+++ + K A           K W   +     ++      +  
Sbjct: 582 LHLKKFHALQGDDCQLIDLAFSKKKA--------DDRKEW-LKLYEPGTVLDPKLTEIPI 632

Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
              +    I    +   R   + ++        +I
Sbjct: 633 SDFINKELILFSLADNIRSIPSVLDGLKPGQRKVI 667


>gi|27530797|dbj|BAC54046.1| DNA gyrase subunit B [Gordonia alkanivorans]
 gi|211927101|dbj|BAG82803.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 424

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 182/427 (42%), Positives = 251/427 (58%), Gaps = 38/427 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWTQTYSYAKP-GALEQ-GDATRKTG 58

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T V F P  DIF+    FN +T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  TTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDED 118

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                +P+  T  Y  G+  ++ +L+R K+ +  + I      +
Sbjct: 119 APTTDVAEVVLSETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGE 178

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+   
Sbjct: 179 GHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDG 238

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EA
Sbjct: 239 KLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEA 298

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSA
Sbjct: 299 KIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSA 358

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KL
Sbjct: 359 GGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKL 417

Query: 496 RYHKIII 502
           RYHKI++
Sbjct: 418 RYHKIVL 424


>gi|325515583|gb|ADZ24408.1| DNA gyrase subunit B [Thiothrix sp. AS]
          Length = 363

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 213/365 (58%), Positives = 283/365 (77%), Gaps = 2/365 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+L I+R G +Y+  +  G    PL + G     TGT V F PS++IF++ +F+
Sbjct: 1   NALSANLELTIRRNGKLYQQMYKLGDPVAPLAIIGDTE-GTGTSVRFWPSAEIFALTEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V+I L+D+R  E RE    Y+GGI+AFV++L+R+K P+  + I
Sbjct: 60  YDILAKRLRELSFLNSGVRIHLLDRR-GEGREDVFEYEGGIKAFVAHLNRNKAPIHNNII 118

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                RD++ +++A++WND Y EN+ C+TNNIPQ+DGG+HLSG R+ALTR + SY+E + 
Sbjct: 119 YFTTERDDVGVEVALQWNDSYQENIFCYTNNIPQRDGGSHLSGFRAALTRTLNSYIESAG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +VE+ +N+ L  +L
Sbjct: 179 LAKKEKISPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVEAAMNERLGEFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E P EAK+I  K+++A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SELF
Sbjct: 239 LESPGEAKLIAGKMIEAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELF 298

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGGSAKQGR R  QAILPL+GKILNVERARFDKM+SSQE+GTLI ALG GIG++
Sbjct: 299 LVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMISSQEVGTLIIALGCGIGRE 358

Query: 489 SFDIN 493
            ++I+
Sbjct: 359 EYNID 363


>gi|308152477|dbj|BAJ22217.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 424

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 183/427 (42%), Positives = 251/427 (58%), Gaps = 38/427 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWTQTYSYAKP-GALEQ-GDATRKTG 58

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T V F P  DIF+    FN +T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  TTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDED 118

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                +P+  T  Y  G+  ++ +L+R K+ +  + I      +
Sbjct: 119 APTTDVAEVVLSETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGE 178

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+   
Sbjct: 179 GHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDG 238

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EA
Sbjct: 239 KLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEA 298

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KIIVKK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSA
Sbjct: 299 KIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSA 358

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KL
Sbjct: 359 GGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKL 417

Query: 496 RYHKIII 502
           RYHKI++
Sbjct: 418 RYHKIVL 424


>gi|197700099|gb|ACH72051.1| DNA gyrase subunit B [Ruegeria pelagia]
          Length = 357

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 213/357 (59%), Positives = 271/357 (75%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+D FS  +++
Sbjct: 1   NALSDWLELRIWRNGKEHVARFERGDTVKHLAVVGDCGDRTGTEVRFLASTDTFSNLEYS 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I + D+R  E  E  +FY+GG+  FV YLDR K P+M +PI
Sbjct: 61  FETLEKRLRELAFLNSGVRIVVTDERPAERLESELFYEGGVNEFVKYLDRSKTPVMDAPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G +D+I I++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 121 YIKGEKDDIGIEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES + + L+ W 
Sbjct: 181 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLMGEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK +V K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPHVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|319958736|gb|ADV90538.1| DNA gyrase subunit B [Bacillus axarquiensis]
          Length = 366

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 177/368 (48%), Positives = 255/368 (69%), Gaps = 3/368 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+   +  G+  + L V G   + TGT   F+P  +IF+    + Y
Sbjct: 1   LSTELDVTVHRDGKIHRQVYNRGVPVSDLEVIGETDH-TGTTTHFVPDPEIFTETTEYEY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  K   
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGL 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  ++ 
Sbjct: 180 IKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAALETFML 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLRY 497
           F++ K RY
Sbjct: 359 FNLEKARY 366


>gi|213585600|ref|ZP_03367426.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 289

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/289 (31%), Positives = 146/289 (50%), Gaps = 7/289 (2%)

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + 
Sbjct: 1   GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 60

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605
           +GK  QY+KD+E+++ Y I+ +L             +S   L   + +     K+I    
Sbjct: 61  KGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRME 120

Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658
               K  +++ V           D++      + L   LN   +     K +   +   N
Sbjct: 121 RRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQN 180

Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
             + +V+    GV   + L+   +     +       ++         +     +  +T 
Sbjct: 181 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTS 240

Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767
               L+ +    R+G+++QRYKGLGEMN  QLWETT++P++R +LRV +
Sbjct: 241 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTV 289


>gi|71833782|emb|CAI94330.1| gyrase B [Helicobacter felis]
          Length = 364

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 163/371 (43%), Positives = 237/371 (63%), Gaps = 7/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I R+G IY   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYRDGQIYRQEFEKGIATTPLEVVGTTK-KRGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I  V  F+   L+ R +E+++LN+  +I+L     P     +  Y+ G++ F+    +
Sbjct: 60  PEIMEVVQFDSGVLKRRFQEMAYLNN--KITLEFHDQPAQVHESYHYQDGLKQFIIDTQK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              PL+   I      + + +++A+ +N+ Y E    F NNI   +GGTH SG +  L++
Sbjct: 118 --TPLISEIIAFSAQVEGMEVEVALAYNESYEEQTFSFVNNIRTIEGGTHESGFKMGLSK 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I SY+++S    ++  SV+ +D REG ++++S+K+ DP+F  QTK KL SS VR ++  
Sbjct: 176 AILSYIQESN--SREGSSVVQEDVREGLSAIISLKLLDPQFEGQTKAKLGSSFVRPIIAK 233

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  AK IV+KVL A+  R+AA++AR++TR+K  L + +LPGKLADC 
Sbjct: 234 LVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLPGKLADCQ 293

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DPK+ EL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K+L S+EI  +I
Sbjct: 294 SKDPKECELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKSEEIKNMI 353

Query: 479 TALGTGIGQDS 489
           TA G G+G++ 
Sbjct: 354 TAFGCGVGKEF 364


>gi|310287736|ref|YP_003938994.1| DNA gyrase subunit B [Bifidobacterium bifidum S17]
 gi|309251672|gb|ADO53420.1| DNA gyrase subunit B [Bifidobacterium bifidum S17]
          Length = 770

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 100/243 (41%), Positives = 144/243 (59%), Gaps = 27/243 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y ADS+ +L+GLDAV+KRP MYIG TD + GL H ++E++DNA+DE+L G  D I
Sbjct: 1   MPKQEYGADSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNAVDEALAGACDHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  +GGLHGVG
Sbjct: 60  TVTLHDDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYSDTDPEHPSPDAPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE 
Sbjct: 180 IIGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLRITVIDENVPET 239

Query: 219 REI 221
            + 
Sbjct: 240 GDD 242



 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 135/439 (30%), Positives = 209/439 (47%), Gaps = 34/439 (7%)

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN----------------- 256
           R    R     + GG++ FV +L       +    RI G                     
Sbjct: 306 RHTHARVEEFRHTGGVKDFVDFLSAG--EAVSDIWRITGEDTYEEETQAVGEGGELHAQK 363

Query: 257 ----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF---- 308
                 +D+AMRW +GY   +  F N +    GG H+ G    LT+QI   VE +     
Sbjct: 364 VTRKCGVDIAMRWTNGYDTTMRSFVNVVETPGGGMHVDGFLMGLTKQIRKAVEDNARKLK 423

Query: 309 -GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K     V  DD   G  +V+++++ +P+F  QTK+ L ++ V+ +V    +      
Sbjct: 424 VNLKDSNMRVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAPVKPIVTRMTDKQFGEM 483

Query: 368 LEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +       K     +++K++     R  AR+ +++TRRK  L+ A++P KL+DC   +  
Sbjct: 484 ITGSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESAAMPSKLSDCQPGNDD 543

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +ML+++E   +I  +G 
Sbjct: 544 VAELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLNNKECAAIIQVVGA 603

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G G   FDI + RYHK+I+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+ 
Sbjct: 604 GSGAG-FDIEQSRYHKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHR 662

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I    S +        +D L  +    E      +  +     L   +D     D  +  
Sbjct: 663 IALAGSHKGEFIYTYSDDELAGRLADLERRHISCNPDIQRYKGLGE-MDADQLADTTMDP 721

Query: 604 FYPNHDKTFIEQAVISGVF 622
                 +  +E A  +   
Sbjct: 722 RTRMLRRIRMEDAAQASEI 740



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + R+ IS    +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 669 HKGEFIYTYSDDELAGRLADLERRHISCNPDIQRYKGLGEMDADQLADTTMDPRTRMLRR 728

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR+ FI +N+
Sbjct: 729 IRMEDAAQASEIFSLLMGDDVPPRKAFIVDNA 760


>gi|294963318|gb|ADF50146.1| DNA gyrase subunit B [Bacillus pumilus]
 gi|294963328|gb|ADF50151.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 356

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 171/357 (47%), Positives = 245/357 (68%), Gaps = 2/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    F
Sbjct: 1   NALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P
Sbjct: 60  DYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEP 119

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + I+G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+
Sbjct: 120 VYIEGEKDGITIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKN 179

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +
Sbjct: 180 GVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKF 239

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL
Sbjct: 240 LLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISEL 299

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           ++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 300 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 356


>gi|119026028|ref|YP_909873.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703]
 gi|154488793|ref|ZP_02029642.1| hypothetical protein BIFADO_02100 [Bifidobacterium adolescentis
           L2-32]
 gi|118765612|dbj|BAF39791.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703]
 gi|154082930|gb|EDN81975.1| hypothetical protein BIFADO_02100 [Bifidobacterium adolescentis
           L2-32]
          Length = 774

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 100/264 (37%), Positives = 150/264 (56%), Gaps = 27/264 (10%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A+S+ +L+GLDAV+KRP MYIG TD + GL H ++E++DNA+DE+L G  + I
Sbjct: 1   MAKDNYGAESLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNAVDEALAGACNHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  SGGLHGVG
Sbjct: 60  IVTLHDDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYSDVDPEHPSPDSPFKKTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + G  +   TGT + +    +IF+   +F+YD L  R+R+ SFL   ++I++ID+  PE 
Sbjct: 180 IIGKVSPKTTGTRIRYWADPEIFNDTAEFSYDQLIDRVRQTSFLVPGLKITVIDENIPET 239

Query: 219 REITMFYKGGIEAFVSYLDRHKKP 242
            + ++     ++  V      +  
Sbjct: 240 GDESIDEMLEVDDNVIEQVTEENT 263



 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/462 (29%), Positives = 216/462 (46%), Gaps = 37/462 (8%)

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS---------------------I 259
               + GG++ FV +L +     +    RI G    +                      +
Sbjct: 317 EEFCHTGGVKDFVDFLSKG--EAVSDIWRIAGEDTYVEETQAVGDDGELHAQKVTRDCAV 374

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-----GSKKDK 314
           D+AMRW +GY   +  F N +    GG H+ G    +T+Q+   +E +        K   
Sbjct: 375 DIAMRWTNGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQVRKAIEDNARKLKVNLKDSH 434

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
             V  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +      +      
Sbjct: 435 MKVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVSRMTDKQFGEMITGSKRG 494

Query: 375 AK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
            K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   +   +ELF+V
Sbjct: 495 YKEQSGRVLEKIVGEMHARVQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIV 554

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G G G   F
Sbjct: 555 EGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGAS-F 613

Query: 491 DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-- 548
           DI + RY+KII+MTDADVDGAHIR LLLT F+R M  LI  G +Y   PPL+ I      
Sbjct: 614 DIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEYGHVYAAVPPLHRIALTGTH 673

Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608
             +Y+      E       L ++   + +           +    A              
Sbjct: 674 KGEYIYTYSDDELAGKLAELDKKHIGYNEDIQRYKGLGEMDADQLADTTMDPRTRMLRRI 733

Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                EQA  S +F+     ++    A  + N  +F   K +
Sbjct: 734 RMEDAEQA--SHIFSLLMGDDVPPRKAFIVENADDFDRSKID 773



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + +K  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 673 HKGEYIYTYSDDELAGKLAELDKKHIGYNEDIQRYKGLGEMDADQLADTTMDPRTRMLRR 732

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA QA  +FS LMGD+V PR+ FI EN+
Sbjct: 733 IRMEDAEQASHIFSLLMGDDVPPRKAFIVENA 764


>gi|314055306|ref|YP_004063644.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
 gi|313575197|emb|CBI70210.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
          Length = 1072

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 144/666 (21%), Positives = 245/666 (36%), Gaps = 78/666 (11%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVLD 50
           +SIQ L  ++ V KRP  Y+G  D  S                       L  +  E+L 
Sbjct: 3   ESIQKLTHIEHVLKRPDSYVGPVDIGSESYWIFHKTDNQFKKKNVNYSPALLKIFDEILV 62

Query: 51  NAIDE--SLEGYADIITVTLNMD-GSCTVSDNGR--GIPTDLHKEEGISAAEVIMTRLHA 105
           NAID           I+  ++ + GS T+ +NG   GI   +H++EGI   E+    L  
Sbjct: 63  NAIDRNSVHPKSVTSISAGIDKETGSITIENNGPLGGIGVRMHEKEGIWNPELTFGHLLT 122

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI---YEMSFINGILDN-PLVV 161
              ++    ++ GG +G G  + N  SS   + IK +G     Y   + N +    P  +
Sbjct: 123 STNYDDTKKRIVGGRNGYGAKLTNIYSSEFSIVIK-DGETKQCYTQKWNNNMTVCHPPKI 181

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFN---YDTLQHRLRELS-FLNSSVQISLIDKRSPE 217
           T  + + +   +TF+P    F +   +   Y   + R+ + +     + ++    +  P+
Sbjct: 182 TKHSASTSSVSITFIPDWKRFGMNKMDASIYKIFEKRVWDANICTTPNCKVKFQGEALPK 241

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                                     +     +   R ++ I              + F 
Sbjct: 242 TSFEAYA--------------KMHEGVTDVCSVTTDRWSVCI-----GPSDNGLEQVSFV 282

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I    GGTH+  + S L   I   + K       K  +     +  F   +   + +P
Sbjct: 283 NGISTTKGGTHVDHVASYLAAGIIDEMAK-------KIKLKPQQVKNTFNIFVKATLENP 335

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
            FSSQ K     SE  S  + F +                I  ++   S  ++     + 
Sbjct: 336 TFSSQVK-----SECTSKTQDFGSKFEPPKNFVKNALKTGIQDELTALSKFKEMRELKKT 390

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLR 454
              RK  +                  K  L + EGDSA   A  G S   R++  + PLR
Sbjct: 391 DGARKSKITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLR 450

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK  NV  A   ++ S+QE   L   LG   G+D  D+++LRY +++IMTDAD DG+HI+
Sbjct: 451 GKCKNVRDASVAQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDGSHIK 510

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
            L+L       PSL+  GF+  +  P+   ++G   +    + +   +  +     +I+ 
Sbjct: 511 GLILNMIHYFWPSLLKLGFVVSMVTPIIKASKGGQSKSFYTDSAFRTWYGSGQAGWKIKY 570

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +       S          A +  K I+D     D   +    I   F+ +   +    L
Sbjct: 571 YKGLGTSTSAE--------AREYFKKIQDLTVKFDMDIMTDKSIILAFDKKKADDRKSWL 622

Query: 635 ASKLAN 640
               A 
Sbjct: 623 LESTAK 628


>gi|110624470|dbj|BAE98182.1| DNA gyrase B subunit [Shewanella glacialipiscicola]
 gi|110624473|dbj|BAE98183.1| DNA gyrase B subunit [Shewanella glacialipiscicola]
          Length = 365

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 213/368 (57%), Positives = 281/368 (76%), Gaps = 4/368 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F PS + FS 
Sbjct: 1   VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIHEIGDAT-KTGTEIRFWPSENTFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+++ L  R+RELSFLNS V I LID+R  +       Y+GGI AFV YL+R+K P+ 
Sbjct: 60  IEFHFEILAKRVRELSFLNSGVGIRLIDERDNKN--ELFKYEGGISAFVDYLNRNKTPIN 117

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY
Sbjct: 118 KDVFHFIQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + 
Sbjct: 178 MENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEK 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP 
Sbjct: 238 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 297

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 357

Query: 484 GIGQDSFD 491
           GIG+D ++
Sbjct: 358 GIGRDEYN 365


>gi|161339240|gb|ABX64371.1| GyrB [Gordonia amicalis]
          Length = 416

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 174/415 (41%), Positives = 242/415 (58%), Gaps = 37/415 (8%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GDA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V F P   IF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 217 --------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 NGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 SAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI 413


>gi|2196818|gb|AAB80826.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 215/399 (53%), Positives = 285/399 (71%), Gaps = 20/399 (5%)

Query: 97  EVIMTRLHAGGK--------FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
           EVIMT   AG          +  +S         VGV VVNALS  L++ I+R G +YE 
Sbjct: 1   EVIMTVPRAGVNSKITTTDAYVDRSR--------VGVPVVNALSKKLQMTIRRAGKVYEQ 52

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
            + +G+ D P+   G A   TGTE+ F PS + FS  +F+++ L  R+RELSFLNS V I
Sbjct: 53  FYTHGVPDAPIKEIGDAT-KTGTEIRFWPSENTFSDVEFHFEILAKRVRELSFLNSGVGI 111

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWND 267
            L+D+R  +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WND
Sbjct: 112 RLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVNKDLFHFMQEREDGITVEVAMQWND 169

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+ 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGFSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           QAILPL+GKILNVE+ARFDKML  QE+ TLITA+G GIG
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFFQEVATLITAIGCGIG 388


>gi|319958734|gb|ADV90537.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 366

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 174/367 (47%), Positives = 255/367 (69%), Gaps = 3/367 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNY 189
           LS+ L + + R+G I+  ++  G+    L + G   + TGT   F+P  +IF    +++Y
Sbjct: 1   LSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TGTTTHFVPDPEIFSETTEYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  K   
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGL 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  +  ++ 
Sbjct: 180 IKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFML 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLR 496
           F++ K R
Sbjct: 359 FNLEKAR 365


>gi|324962630|gb|ADY62417.1| gyrase subunit B [Frankia sp. BR]
 gi|324962632|gb|ADY62418.1| gyrase subunit B [Frankia sp. CeD]
 gi|324962634|gb|ADY62419.1| gyrase subunit B [Frankia sp. Allo2]
 gi|324962638|gb|ADY62421.1| gyrase subunit B [Frankia sp. Thr]
          Length = 360

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 157/359 (43%), Positives = 213/359 (59%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVTDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I  +G+++   ++    D PL  TG+      + VTF     IF   +
Sbjct: 61  VVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTGTS-VTFWADPTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y+TL  RL+E++FLN  + I+L+D+R  E   +T  Y  G+  FV +L+  K  + +S
Sbjct: 120 YKYETLSRRLQEMAFLNKGLSITLVDERDEERVAVTYKYANGLVDFVGHLNATKDTIHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I  +LAM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLESKGVGIEAELAMQWNGGYTESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +  V+  
Sbjct: 240 QNLLKPVKAGAKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARAIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|190350975|dbj|BAB13754.2| type II DNA topoisomerase [Pichia guilliermondii]
          Length = 782

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 139/669 (20%), Positives = 241/669 (36%), Gaps = 48/669 (7%)

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D  +       I V ++  + + +V ++G+GIP ++HK+E I   E
Sbjct: 14  GLYKIFDEILVNAADNKIRDPSMRNIKVNIDAENNTISVMNDGKGIPIEIHKKEKIYIPE 73

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL 155
           +I   L     ++    KV+GG +G G  + N  S+   L         +Y+ ++ N + 
Sbjct: 74  LIFGNLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFVLETADLNTSQVYKQTWTNNMA 133

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLI 211
                 +T        T+VTF P    F ++  + D    L+ R+ +L        I L 
Sbjct: 134 NLTKPKITKLKSKKEYTKVTFKPDLSKFHMEMLDDDILSVLRRRVYDLCGTVKDCNIYLN 193

Query: 212 DKRSPEPREITM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
           DK+       +            S      +   ++   I     N   ++A   +DG  
Sbjct: 194 DKKLSIRNFKSYVEMYVNAIRERSPDPVAPEGETRNYSTIVHEVFNDRWEVAFAVSDGSF 253

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
             V  F N+I    GGTH+  +   +  ++           K K ++   + R      +
Sbjct: 254 NQV-SFVNSIATTSGGTHVKYVSDQIITKLID-ALTKKEKGKKKLNIKPQEVRNNMFVFI 311

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK----IIVKKVLDAS 386
           +  + +P F+SQTKE+L +      V  F        +      AK     I  K+    
Sbjct: 312 NCLIENPAFTSQTKEQLTTR-----VAQFGGKPSEKIVISDQFIAKILKTSIADKIRTIV 366

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG-----GSAKQ 441
              +    ++    RK  +              ++  K  L L EGDSA      G    
Sbjct: 367 NANEDKEMSKADGSRKSRIKNQVKLVDANKAGTKEGYKCTLILTEGDSAMPLAVAGLTVV 426

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHK 499
           GR        PLRGK+LNV  A  +++  + EI ++   +G    +     +I  LRY  
Sbjct: 427 GRD--YYGCFPLRGKLLNVREASIEQVSKNAEINSIKQIMGLQHKKRYTPENIKSLRYGH 484

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGK----SLQYVK 554
           I+IMTD D DG+HI+ L++ F     P L+   GFL     P+  +T        +    
Sbjct: 485 IMIMTDQDQDGSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVKVTITGRGNHRVIPFY 544

Query: 555 DEESLEDYL----INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
           +    E +            +      +       +    +D  +K    ++D    +  
Sbjct: 545 NMPEFEKWRETEGTTCKWKHKYFKGLGTSLESEGREYFAALDRHMKSFHALQDGDSQYID 604

Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG 670
                      F+ +   E             +   +  E      IN   IL       
Sbjct: 605 M---------AFSKKKADER-KDWLQAFRPGTHLDPQIREIPISEFINKELILFSMADNV 654

Query: 671 VQEQFVLEG 679
                +L+G
Sbjct: 655 RSIPSILDG 663


>gi|27901577|dbj|BAC55909.1| DNA gyrase subunit B [Williamsia muralis]
 gi|108860573|dbj|BAE96001.1| DNA gyrase B [Williamsia muralis]
          Length = 437

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 180/440 (40%), Positives = 250/440 (56%), Gaps = 51/440 (11%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS  ++L I   G  +E ++ N +   PL   G+    TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSKTVELEINHAGFSWEQTYTNAVP-GPLKK-GAPTKKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T V +     IF    +++DT+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRYWADEKIFETTTYDFDTIARRLQEMAFLNKGLTITLTDERPATIEVGDADDVDVAE 118

Query: 216 ---------------------------------PEPREITMFYKGGIEAFVSYLDRHKKP 242
                                             + R     Y GG+E FV +L+  K  
Sbjct: 119 APKSEDELAEEAANTELADEAVVDAEGKPENSKKKSRTRIYHYPGGLEDFVRHLNNRKTA 178

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +  S +          +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  
Sbjct: 179 IHNSVLSFTAKGTGHELEVAMQWNSGYAESVHTFANTINTHEGGTHEEGFRSALTATVNK 238

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +    K     + G+D REG  +V+S+K+ DP+F  QTK KL  +EV+S V+   N+
Sbjct: 239 YATEKKLVKDKGDKLTGEDIREGLAAVISVKVADPQFEGQTKTKLGITEVKSFVQKVSNE 298

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ W E +P EAKII++K ++++  R AAR+AR+L RRK   DI  LPGKLADC  +DP
Sbjct: 299 NLAHWFESNPAEAKIIIRKAVESANARLAARKARELVRRKSANDIGGLPGKLADCRSKDP 358

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K E+++VEGDSAGGSAK GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA G
Sbjct: 359 SKCEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFG 418

Query: 483 TGIGQDSFDINKLRYHKIII 502
           TGI  D FDI+KLRYHKI++
Sbjct: 419 TGI-HDEFDISKLRYHKIVL 437


>gi|270017258|gb|ACZ58146.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 422

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 180/425 (42%), Positives = 249/425 (58%), Gaps = 38/425 (8%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GDAT 58

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------- 216
             TGT V F P   IF+    FN +T+  RL+E++FLN  + I+L D+R           
Sbjct: 59  RKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 217 -------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
                                    +P+  T  Y  G+  ++ +L+R K+ +  + I   
Sbjct: 119 GDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFS 178

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K
Sbjct: 179 AKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIK 238

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           +    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +
Sbjct: 239 EKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEAN 298

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VE
Sbjct: 299 PAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVE 358

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD
Sbjct: 359 GDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFD 417

Query: 492 INKLR 496
           I+KLR
Sbjct: 418 ISKLR 422


>gi|270017262|gb|ACZ58148.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 423

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 180/426 (42%), Positives = 249/426 (58%), Gaps = 38/426 (8%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GDA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V F P   IF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 217 --------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 NGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 SAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L    E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHXFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D F
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEF 417

Query: 491 DINKLR 496
           DI+KLR
Sbjct: 418 DISKLR 423


>gi|311114491|ref|YP_003985712.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
           vaginalis ATCC 14019]
 gi|310945985|gb|ADP38689.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
           vaginalis ATCC 14019]
          Length = 786

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 102/243 (41%), Positives = 143/243 (58%), Gaps = 27/243 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  N     YDADS+ +L+GLDAV+KRP MYIG TD + GL H ++E++DNA+DE+L G 
Sbjct: 1   MVSNKDREQYDADSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNAVDEALAGA 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  +GGL
Sbjct: 60  CDHIIVTLHDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------D 156
           HGVG SVVNALS  L + + R+G  + M+F  G                           
Sbjct: 120 HGVGSSVVNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADSMHPSPASPFKRTRKNKP 179

Query: 157 NPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             L + G+ +   TGT V +    +IF+    F+Y+ L  R+R+ SFL   ++I++ID+ 
Sbjct: 180 TELEIIGTVSPKTTGTRVRYWADPEIFNSTARFSYEQLIDRVRQTSFLVPGLRITVIDEH 239

Query: 215 SPE 217
            PE
Sbjct: 240 VPE 242



 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 196/369 (53%), Gaps = 33/369 (8%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-------------- 258
           +    PR +   + GG+  FV +L + +        RI G    +               
Sbjct: 321 QNKHHPRVVEFLHNGGVRDFVDFLSKGQAV--SDIWRISGEDTYVEETQAVDSAGDLHAQ 378

Query: 259 -------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF--- 308
                  +D+AMRW +GY   ++ F N +    GG H+ G    LT+QI   VE +    
Sbjct: 379 QVTRKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKL 438

Query: 309 --GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K     +  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 439 KVNLKDSNTKIERDDILAGMVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGE 498

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   + 
Sbjct: 499 MISGSKRGFKEQSARVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGND 558

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 559 DVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVG 618

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G   FDI++ RY+KI++MTDADVDGAHIR LLLT F+R M  LI NG +Y   PPL+
Sbjct: 619 AGSGAS-FDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIENGHVYAAVPPLH 677

Query: 543 GITRGKSLQ 551
            I      +
Sbjct: 678 RIALAGKHK 686



 Score =  133 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLL 763
              G+ I       L   +  +  KGI     +QRYKGLGEM+A QL +TT++P TR L 
Sbjct: 684 KHKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRMLR 743

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+++ DA QA ++F  LMGD+V PR++FI +N+
Sbjct: 744 RIRMEDAQQASEVFDLLMGDDVPPRKQFIVDNA 776


>gi|312434821|gb|ADQ74917.1| gyrase B [Streptomyces parvulus]
          Length = 398

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 181/398 (45%), Positives = 256/398 (64%), Gaps = 21/398 (5%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L + IK +G  +   +  G+   PL     A  D+GT VTF 
Sbjct: 1   SGGLHGVGVSVVNALSSRLSVDIKCDGYRWTQDYKLGVPTAPLAQ-HEAVEDSGTTVTFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPRE 220
              DIF   +++++TL  R +E++FLN  ++I+L D+R                  E + 
Sbjct: 60  ADPDIFETTEYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKHEVKS 119

Query: 221 ITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFT 277
           ++ +Y+GGI  FV Y   R  + +  S I ++      N+S+++AM+WN GY E V  F 
Sbjct: 120 VSYYYEGGIVDFVKYLNSRKGEVVHPSVIDLEAEDKDRNLSLEVAMQWNGGYTEGVYSFA 179

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P
Sbjct: 180 NIIHTHEGGTHEEGFRAALTSLINKYARDKRLLREKDDNLTGDDIREGLTAIISVKLSEP 239

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL ++EV++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARD
Sbjct: 240 QFEGQTKTKLGNTEVKTFVQRVVYEHLADWLDRNPNEAADIIRKGIQAATARVAARKARD 299

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           LTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKI
Sbjct: 300 LTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKI 359

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           LNVE+AR D++L +QEI  +I+A GTG+ +D FDI KL
Sbjct: 360 LNVEKARIDRILQNQEIQAMISAFGTGVHED-FDIEKL 396


>gi|319958762|gb|ADV90551.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 367

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 174/367 (47%), Positives = 256/367 (69%), Gaps = 3/367 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+  ++  G+  + L + G   + TGT   F+P  +IF+    ++Y
Sbjct: 1   LSTELVVTVHRDGKIHRQTYKRGVPVSDLEIIGETDH-TGTTTHFVPDPEIFTETTEYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  K   
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGL 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  +  ++ 
Sbjct: 180 IKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFML 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLR 496
           F++ K R
Sbjct: 359 FNLEKAR 365


>gi|71833762|emb|CAI94320.1| gyrase B [Helicobacter bilis]
 gi|93004062|emb|CAI94322.2| gyrase B [Helicobacter bilis ATCC 43879]
          Length = 368

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 156/371 (42%), Positives = 232/371 (62%), Gaps = 3/371 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I +   IY+  F  GI    L + G      GT + F P 
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETK-KHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I  + +F+ + L  R +E+++L   ++I   D+R           +GG+  F+  +++
Sbjct: 60  PEIMEITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHF--EGGLSQFIEDINK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                         +  +  I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 118 KTLITQILSFEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V+GDD REG  ++++ K+ DP+F  QTK KL SS V+ +V+ 
Sbjct: 178 AILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQK 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + ++ + EE+P +AK+I++KVL A+  R+AA+RARDLTR+   + +++LPGK ADC 
Sbjct: 238 LTYEKMAKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQ 297

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R D +L S+EI  +I
Sbjct: 298 SKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMI 357

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 358 TAFGCGIGDEF 368


>gi|13487309|gb|AAK27487.1|AF343324_1 DNA gyrase B [Cycloclasticus sp. NOP-122E1]
 gi|13487313|gb|AAK27489.1|AF343326_1 DNA gyrase B [Cycloclasticus sp. NOP-122J1]
 gi|13487315|gb|AAK27490.1|AF343327_1 DNA gyrase B [Cycloclasticus sp. N-112A1]
 gi|13487325|gb|AAK27495.1|AF343332_1 DNA gyrase B [Cycloclasticus sp. 2N-232]
 gi|13487327|gb|AAK27496.1|AF343333_1 DNA gyrase B [Cycloclasticus sp. P-CE61]
 gi|13487329|gb|AAK27497.1|AF343334_1 DNA gyrase B [Cycloclasticus pugetii PS-1]
 gi|13487331|gb|AAK27498.1|AF343335_1 DNA gyrase B [Cycloclasticus sp. P-CE721]
 gi|13487333|gb|AAK27499.1|AF343336_1 DNA gyrase B [Cycloclasticus sp. N2-PA2-222]
 gi|13487335|gb|AAK27500.1|AF343337_1 DNA gyrase B [Cycloclasticus sp. N2-PA9-2-2]
 gi|13487337|gb|AAK27501.1|AF343338_1 DNA gyrase B [Cycloclasticus sp. N2-PA8-1]
 gi|13487339|gb|AAK27502.1|AF343339_1 DNA gyrase B [Cycloclasticus sp. N2-PA8-2]
 gi|13487341|gb|AAK27503.1|AF343340_1 DNA gyrase B [Cycloclasticus sp. P-1P31]
 gi|13487343|gb|AAK27504.1|AF343341_1 DNA gyrase B [Cycloclasticus sp. P-1P32]
          Length = 362

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 208/365 (56%), Positives = 273/365 (74%), Gaps = 3/365 (0%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           EG+ +   +  G    PL V G     TGT + F PS   FS  +F++D L  RLRELSF
Sbjct: 1   EGSQHYQLYKKGEPVEPLKVVGPTE-KTGTSLRFKPSIGTFSNIEFHFDLLAKRLRELSF 59

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           LNS V+I L D+R+ +       Y+GGI+AFV++L+++K  + ++ I I   ++++++++
Sbjct: 60  LNSGVRIRLSDERTAKE--EIFEYEGGIKAFVNHLNKNKSQIHENIIYINVDKNDVNVEV 117

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A++WND Y EN+ C+TNNIPQ+DGGTHL+G R+ LTR +  Y+E S  +KK K +  GDD
Sbjct: 118 ALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRAGLTRTLNQYIEGSGLAKKQKVTTSGDD 177

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T+VLS+K+PDP+FSSQTK+KLVSSEV+S+VES + + L  +L E+P EAK I  K
Sbjct: 178 AREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKSIVESSLAEALQEFLLENPTEAKEIAGK 237

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           +L+A+  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SE+FLVEGDSAGGSAKQ
Sbjct: 238 MLEAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSEIFLVEGDSAGGSAKQ 297

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG++ +    LRYHKII
Sbjct: 298 GRDRRTQAILPLKGKILNVEKARFDKMLSSDEVGTLITALGCGIGKEEYKPENLRYHKII 357

Query: 502 IMTDA 506
           IMTDA
Sbjct: 358 IMTDA 362


>gi|71833758|emb|CAI94318.1| gyrase B [Helicobacter bilis]
          Length = 368

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 3/371 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I +   IY+  F  GI    L + G      GT + F P 
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETK-KHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I  + +F+ + L  R +E+++L   ++I   D+R           +GG+  F+  +++
Sbjct: 60  PEIMEITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHF--EGGLSQFIEDINK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                         +  +  I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 118 KTLITQILSFEATENEHDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V+GDD REG  ++++ K+ DP+F  QTK KL SS V+ +V+ 
Sbjct: 178 AILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQK 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + +S + EE+P +AK+I++KVL A+  R+AA+RARDLTR+   + +++LPGK ADC 
Sbjct: 238 LTYEKMSKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQ 297

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R D +L S+EI  +I
Sbjct: 298 SKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMI 357

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 358 TAFGCGIGDEF 368


>gi|27530795|dbj|BAC54045.1| DNA gyrase subunit B [Gordonia amarae]
          Length = 426

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 182/429 (42%), Positives = 255/429 (59%), Gaps = 40/429 (9%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L IKR+G+ +  +++N      L   G+A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELEIKRDGHNWSQTYLNAEPQT-LHQ-GAATRKTG 58

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T   F P   IF+    FN +T+  RL+E++FLN  + I+L D R               
Sbjct: 59  TTTRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDNRPQAVEVPGDPNGDGP 118

Query: 217 ----------------------EPREITMFYKGGIEAFVSYLDRHKK-PLMQSPIRIQGS 253
                                 +P+  T  Y  G+  ++ ++++  K P+ QS I   G 
Sbjct: 119 APGGTEIAEAVQSETEKAAAVTKPKTRTYHYAEGLVDYIKHINKRSKAPIHQSVIGFAGK 178

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                +++AM+WNDGY E++  F N I   +GG+H  G R+ALT  +  Y       K+ 
Sbjct: 179 GTGHEVEIAMQWNDGYSESIHTFANTINTHEGGSHEEGFRAALTSTVNKYAADKKLMKEK 238

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L+ W E +P 
Sbjct: 239 DGKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQKVCNEHLAHWFEANPA 298

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EAK+I+KK +D++  R AAR+ARDL RRK   DI  LPGKLADC   DP   E+++VEGD
Sbjct: 299 EAKVIIKKAVDSAQARAAARKARDLVRRKTATDIGGLPGKLADCRSNDPALCEVYIVEGD 358

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAK GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI 
Sbjct: 359 SAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIA 417

Query: 494 KLRYHKIII 502
           KLRYHKI++
Sbjct: 418 KLRYHKIVL 426


>gi|71833764|emb|CAI94321.1| gyrase B [Helicobacter bilis]
          Length = 368

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 156/371 (42%), Positives = 232/371 (62%), Gaps = 3/371 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I +   IY+  F  GI    L + G      GT + F P 
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETK-KHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I  + +F+ + L  R +E+++L   ++I   D+R           +GG+  F+  +++
Sbjct: 60  PEIMEITEFDSNILTRRFKEMAYLTHDIKIRFKDERDGSDTTFHF--EGGLSQFIEDINK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                         +  +  I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 118 KTLITQILSFEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V+GDD REG  ++++ K+ DP+F  QTK KL SS V+ +V+ 
Sbjct: 178 AILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQK 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + ++ + EE+P +AK+I++KVL A+  R+AA+RARDLTR+   + +++LPGK ADC 
Sbjct: 238 LTYEKMAKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQ 297

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R D +L S+EI  +I
Sbjct: 298 SKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMI 357

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 358 TAFGCGIGDEF 368


>gi|207107932|dbj|BAG71978.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 406

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 170/409 (41%), Positives = 242/409 (59%), Gaps = 33/409 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F 
Sbjct: 1   GVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------------------- 214
             +++++T+  RL+E++FLN  + I+L D+R                             
Sbjct: 59  TTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAEST 118

Query: 215 -SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
              + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+V
Sbjct: 119 APHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESV 178

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+K
Sbjct: 179 HTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVK 238

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AAR
Sbjct: 239 VSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAAR 298

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+L RRK   DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILPL
Sbjct: 299 KARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPL 358

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           RGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI KLRYHKI++
Sbjct: 359 RGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVL 406


>gi|125583360|gb|EAZ24291.1| hypothetical protein OsJ_08043 [Oryza sativa Japonica Group]
          Length = 1487

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 110/527 (20%), Positives = 205/527 (38%), Gaps = 49/527 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            +  Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 29  EEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVYEDGAMVSRSVTYVPGLYKIFDEILVN 88

Query: 52  AIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + V ++ D G  +V +NG GIP ++H+EEG+   E+I   L  
Sbjct: 89  AADNKQRDPSM----DSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPEMIFGHLLT 144

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVT 162
              ++    K +GG +G G  + N  S+   +     R    Y+  F   +   +   +T
Sbjct: 145 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSENMGKKSEPQIT 204

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                +  T VTF P    F++     D +    + +  +  ++  ++  +   +   + 
Sbjct: 205 KCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRKRVVDMAGTLGKTVKVELDHQKVPVH 264

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             +   ++ ++    + +  + + P   Q   D   + +++          + F N I  
Sbjct: 265 -SFSDYVKLYIKSASKDRDDVNELPSISQKVNDRWEVCVSLSEG---QFQQVSFVNRIAT 320

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH+  + + +   + + V K   +   K        +      ++  + +P F SQ
Sbjct: 321 IKGGTHVDYVTNQIATHVMNIVNKRNKNAHMKAHN----VKSHLWVFVNALIDNPAFDSQ 376

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L + +      SF +    +      + +  IV  +L  +  + +    +    ++
Sbjct: 377 TKETLTTRQA-----SFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKELQKTDGSKR 431

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             L              +D     L L EGDSA   A  G S   R+   + PLRGK+LN
Sbjct: 432 SRLTGIPKLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFPLRGKLLN 491

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           V  A   +++ + EI  +   LG   G+       LRY  ++IMTD 
Sbjct: 492 VREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQ 538


>gi|283456278|ref|YP_003360842.1| DNA gyrase subunit B [Bifidobacterium dentium Bd1]
 gi|283102912|gb|ADB10018.1| gyrB2 DNA gyrase subunit B [Bifidobacterium dentium Bd1]
          Length = 778

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 143/243 (58%), Gaps = 27/243 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A S+ +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G  + I
Sbjct: 1   MAKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGACNHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  SGGLHGVG
Sbjct: 60  VVTLHSDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + MSF  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE 
Sbjct: 180 IIGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPET 239

Query: 219 REI 221
            + 
Sbjct: 240 GDE 242



 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/437 (31%), Positives = 206/437 (47%), Gaps = 35/437 (8%)

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS------------- 258
            +R    R     + GG++ FV +L +     +    RI G    +              
Sbjct: 312 RQRYGHARVEEFCHNGGVKDFVDFLSKG--EAVSDIWRITGDDTYVEETQAVGEGGELHA 369

Query: 259 --------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-- 308
                   +D+AMRW DGY   +  F N +    GG H+ G    +T+QI   VE +   
Sbjct: 370 QKVTRDCAVDIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARK 429

Query: 309 ---GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                K     V  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +    
Sbjct: 430 LKVNLKDSNMKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFG 489

Query: 366 AWLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             +       K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   +
Sbjct: 490 EMITGSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGN 549

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +
Sbjct: 550 DDVAELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVV 609

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G G   FDI + RY+KII+MTDADVDGAHIR LLLT F+R M  LI +G +Y   PPL
Sbjct: 610 GAGSGAS-FDIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPL 668

Query: 542 YGITRGK--SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           + I        +Y+      E       L  +   + D           +    A     
Sbjct: 669 HRIALTGAHKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMD 728

Query: 600 LIKDFYPNHDKTFIEQA 616
                         EQA
Sbjct: 729 PRTRMLRRIRMEDAEQA 745



 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + RK I+    +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 677 HKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 736

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA QA+++FS LMGD+V PR+ FI EN+
Sbjct: 737 IRMEDAEQANEIFSLLMGDDVPPRKAFIVENA 768


>gi|170591240|ref|XP_001900378.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia
           malayi]
 gi|158591990|gb|EDP30592.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia
           malayi]
          Length = 1178

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 123/590 (20%), Positives = 219/590 (37%), Gaps = 52/590 (8%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDT-----------DGES------------GLHHMIYEVL 49
           +  Q L  L  +  RP  YIG T           D  +            GL  +  E+L
Sbjct: 63  EKYQRLTPLKHILYRPDSYIGPTFLSDEQPIYVYDDITKQILKKEARIVPGLLKIFDEIL 122

Query: 50  DNAIDESLEG-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D          I + ++ +  + ++ +NGRGIP ++H  EGI    +I   L    
Sbjct: 123 VNAADNKRRDPQMTTIAINIDKERNTISIWNNGRGIPVEIHPREGIYVPTMIFGTLFTSS 182

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLR--IKREGNIYEMSFINGILDNPLVVTGSA 165
            ++    K+ GG +G G  + N  S+   +    K+ G  +   + N + D    +   A
Sbjct: 183 NYDDSELKIVGGRNGFGAKLCNIFSTEFSVETCTKQSGLRFFQCWRNNMNDVDDPIISDA 242

Query: 166 GND--TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             +    T VTF P    F +   + DT+Q  +R +  +                   T 
Sbjct: 243 STNASDYTCVTFKPDLSKFKLSTLDEDTIQVMIRRIVDIAG------TLDGVNVFLNGTK 296

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
               G + +V     +    +++         N    +A+  +D  + ++  F NNI   
Sbjct: 297 IEVSGFKDYVKLFSTYTGESVENSTVPSYCSVNDRWQIAVARSDTGYNHI-SFVNNINTL 355

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GG H+  + + +  ++   + + +G     + +     +      ++  + +P F SQ+
Sbjct: 356 KGGRHVDYIVNQIVSRLKHEINQRYGC---DKFISAHQIKNRLHIFVNSLIENPAFESQS 412

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE L +S         V +       +       ++  +                     
Sbjct: 413 KEYLTTSVKNFGSTCIVPESFYENFIKDSDIIHHLLCDISQ-------QHTTSLNRSMNR 465

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNV 460
            L   S     AD   ++     L + EGDSA   A  G +   R+   + P+RGK+ NV
Sbjct: 466 SLWDLSKLEDAADAGTKNGCNCTLIITEGDSAKALAVAGLAVIGRKQYGVFPIRGKLTNV 525

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLL 517
                   + + EI  L+  LG   G++     K   LRY +++IMTD D DG+HI+ L+
Sbjct: 526 RGMDAKMAVENAEISALVRILGLKFGENYSSHEKLKSLRYGRLLIMTDQDPDGSHIKGLI 585

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           + F     PSL+   ++     PL    RG  ++        E +     
Sbjct: 586 VNFLHVYWPSLLKANYVSYFITPLLKAKRGSDIKSFYSTADYEKWRAENP 635


>gi|71833754|emb|CAI94316.1| gyrase B [Helicobacter bilis]
          Length = 368

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 157/371 (42%), Positives = 232/371 (62%), Gaps = 3/371 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I +   IY+  F  GI    L + G      GT + F P 
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETK-KHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I  + +F+ + L  R +E+++L   ++I   D+R           +GG+  F+  +++
Sbjct: 60  PEIMEITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHF--EGGLSQFIEDINK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                         +  +  I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 118 KTLITQILSFEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V+GDD REG  ++++ K+ DP+F  QTK KL SS V+ +V+ 
Sbjct: 178 AILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQK 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + +S + EE+P +AK+I++KVL A+  R+AA+RARDLTR+   + +++LPGK ADC 
Sbjct: 238 LTYEKMSKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQ 297

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R D +L S+EI  +I
Sbjct: 298 SKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMI 357

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 358 TAFGCGIGDEF 368


>gi|167508098|gb|ABZ81324.1| GyrB [Bowmanella pacifica]
          Length = 354

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 204/357 (57%), Positives = 266/357 (74%), Gaps = 4/357 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L+LRI+R G I+E  + +G+   PL   G    + GT + F PS   FS   F+
Sbjct: 1   NALSEKLQLRIRRGGKIHEQEYQHGVPQAPLAPVGETE-EKGTAIRFWPSPQTFSDTVFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I LID+R  +       Y+GGI AFV +L+++K P+ Q   
Sbjct: 60  YDILAKRLRELSFLNSGVSIHLIDERDGKS--DHFCYEGGINAFVQFLNQNKTPVHQKAF 117

Query: 249 RIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +++E  
Sbjct: 118 HFSTEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMEAE 177

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+  VE+ + + L  +
Sbjct: 178 GLNKKSKTNASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAVETTMGEKLQEF 237

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P +AKII  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL
Sbjct: 238 LLENPADAKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSEL 297

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           ++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG G
Sbjct: 298 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 354


>gi|308152469|dbj|BAJ22213.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 424

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 183/427 (42%), Positives = 252/427 (59%), Gaps = 38/427 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++       PL   G A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKP-GPLEK-GDATRKTG 58

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T V F P  DIF+    FN +T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  TTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDANGDED 118

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                +P+  T  Y  G+  ++ +L+R K+ +  + I      +
Sbjct: 119 APATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGE 178

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+   
Sbjct: 179 GHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDG 238

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EA
Sbjct: 239 KLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEA 298

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KIIVKK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSA
Sbjct: 299 KIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSA 358

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KL
Sbjct: 359 GGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKL 417

Query: 496 RYHKIII 502
           RYHKI++
Sbjct: 418 RYHKIVL 424


>gi|167508096|gb|ABZ81323.1| GyrB [Bowmanella denitrificans]
          Length = 354

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 206/357 (57%), Positives = 268/357 (75%), Gaps = 4/357 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L+LRI+R G I+E  + +G+   PL   G   ++ GT + F PS   FS  +F+
Sbjct: 1   NALSEKLQLRIRRGGKIHEQEYHHGVPQAPLAPVGET-DEKGTSIRFWPSPATFSDVEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I L D+R  +       Y+GGI+AFV YL+++K P+ Q   
Sbjct: 60  YDILAKRLRELSFLNSGVSIYLTDERDGKS--DHFCYEGGIKAFVQYLNQNKTPVHQKAF 117

Query: 249 RIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                RD+ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+E  
Sbjct: 118 HFSSERDDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEAE 177

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+  VE+ + + L  +
Sbjct: 178 GLNKKSKTNASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAVETTMGEKLQEF 237

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P +AKII  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL
Sbjct: 238 LLENPGDAKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSEL 297

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           ++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG G
Sbjct: 298 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 354


>gi|6729174|dbj|BAA89720.1| DNA gyrase subunit B [Actinoplanes utahensis]
          Length = 396

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 173/398 (43%), Positives = 261/398 (65%), Gaps = 12/398 (3%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +YKVSGGLHGVGVSVVNALS+ + + I+++G  +   +   +    L V G   +  G+ 
Sbjct: 3   AYKVSGGLHGVGVSVVNALSTRMAVEIQKDGFFWRQKYDYSVP-GEL-VKGEPTDQAGST 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYK 226
           V F P  +IF   DF+Y T+  RL+E++FLN ++ I+  D+R      + EPR++T  Y+
Sbjct: 61  VQFWPDPEIFETVDFDYQTIYRRLQEMAFLNRALTINYTDQRPDQVDENGEPRKVTFMYE 120

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            GI  FV +L+  K  + ++ I+ +     + +++++AM+WN+ Y E+V  F N I   +
Sbjct: 121 DGIADFVRHLNATKSAIHKTVIQFEAEAPEEGMAVEIAMQWNESYGESVYTFANRINTHE 180

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH  G R+ALT  +  Y  +    K   + + G+D REG  +++S+ + +P+F  QTK
Sbjct: 181 GGTHEEGFRAALTSIVNRYGVEKKFLK-GDQKLSGEDIREGLAAIISVTLANPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +++++  V+   N+ L+ W + +P +AK+I+ K   A+  R AA++AR L RRK +
Sbjct: 240 TKLGNTDMKGFVQKVCNEQLADWFDRNPADAKLIITKADQAARARIAAQQARKLARRKSL 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+  S+PGKLADC   DP+++ELF+VEGDSAGGSAK GR    QAILP+RGKILNVE+AR
Sbjct: 300 LESGSMPGKLADCQSTDPRETELFIVEGDSAGGSAKSGRESRIQAILPIRGKILNVEKAR 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            D++L + E+  LITA+GTGI  D FDI+KLRYHKII+
Sbjct: 360 IDRVLKNNEVQALITAMGTGI-HDEFDISKLRYHKIIL 396


>gi|171742643|ref|ZP_02918450.1| hypothetical protein BIFDEN_01757 [Bifidobacterium dentium ATCC
           27678]
 gi|171278257|gb|EDT45918.1| hypothetical protein BIFDEN_01757 [Bifidobacterium dentium ATCC
           27678]
          Length = 781

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 98/244 (40%), Positives = 144/244 (59%), Gaps = 27/244 (11%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           ++   +Y A S+ +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G  + 
Sbjct: 3   SMAKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGACNH 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  SGGLHGV
Sbjct: 62  IVVTLHSDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPL 159
           G SVVNALSS L + + R+G  + MSF  G                             L
Sbjct: 122 GSSVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTEL 181

Query: 160 VVTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
            + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE
Sbjct: 182 EIIGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPE 241

Query: 218 PREI 221
             + 
Sbjct: 242 TGDE 245



 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/437 (31%), Positives = 206/437 (47%), Gaps = 35/437 (8%)

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS------------- 258
            +R    R     + GG++ FV +L +     +    RI G    +              
Sbjct: 315 RQRYGHARVEEFCHNGGVKDFVDFLSKG--EAVSDIWRITGDDTYVEETQAVGEGGELHA 372

Query: 259 --------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-- 308
                   +D+AMRW DGY   +  F N +    GG H+ G    +T+QI   VE +   
Sbjct: 373 QKVTRDCAVDIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARK 432

Query: 309 ---GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                K     V  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +    
Sbjct: 433 LKVNLKDSNMKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFG 492

Query: 366 AWLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             +       K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   +
Sbjct: 493 EMITGSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGN 552

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +
Sbjct: 553 DDVAELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVV 612

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G G   FDI + RY+KII+MTDADVDGAHIR LLLT F+R M  LI +G +Y   PPL
Sbjct: 613 GAGSGAS-FDIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPL 671

Query: 542 YGITRGK--SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           + I        +Y+      E       L  +   + D           +    A     
Sbjct: 672 HRIALTGAHKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMD 731

Query: 600 LIKDFYPNHDKTFIEQA 616
                         EQA
Sbjct: 732 PRTRMLRRIRMEDAEQA 748



 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + RK I+    +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 680 HKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 739

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA QA+++FS LMGD+V PR+ FI EN+
Sbjct: 740 IRMEDAEQANEIFSLLMGDDVPPRKAFIVENA 771


>gi|308153088|dbj|BAJ22133.1| DNA gyrase subunit B [Streptomyces griseus]
          Length = 403

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 177/405 (43%), Positives = 250/405 (61%), Gaps = 24/405 (5%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y VSGGLHGVGVSVVNALS+ + + +K +G+ +   +  G+   PL     A  +TGT V
Sbjct: 1   YTVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQ-HEATEETGTTV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------ 215
           TF    DIF   +++++TL  R +E++FLN  + + L D+R                   
Sbjct: 60  TFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSVDAAEPSE 119

Query: 216 -PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHE 271
               R +T  Y+ GI  FV Y   R    + QS I I+    +  +S+++AM+WN  Y E
Sbjct: 120 EETARSVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAMQWNTQYTE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N I   +GGTH  G R+ALT  +  Y       +    ++ G+D REG T+++S
Sbjct: 180 GVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLRDKDDNLTGEDVREGLTAIIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++E ++ V+  V++ L+ W + +P EA  I++K + AS  R A
Sbjct: 240 VKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAIL
Sbjct: 300 ARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAIL 359

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           P+RGKILNVE+AR DK+L + E+  LI+A GTG+ +D FDI KLR
Sbjct: 360 PIRGKILNVEKARVDKILQNTEVQALISAFGTGVHED-FDIEKLR 403


>gi|309801426|ref|ZP_07695553.1| DNA gyrase, B subunit, C-terminal domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|308221941|gb|EFO78226.1| DNA gyrase, B subunit, C-terminal domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 778

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 143/243 (58%), Gaps = 27/243 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +   +Y A S+ +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G  + I
Sbjct: 1   MAKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGACNHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  SGGLHGVG
Sbjct: 60  VVTLHSDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + MSF  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE 
Sbjct: 180 IIGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPET 239

Query: 219 REI 221
            + 
Sbjct: 240 GDE 242



 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/437 (31%), Positives = 206/437 (47%), Gaps = 35/437 (8%)

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS------------- 258
            +R    R     + GG++ FV +L +     +    RI G    +              
Sbjct: 312 RQRYGHARVEEFCHNGGVKDFVDFLSKG--EAVSDIWRITGDDTYVEETQAVGEGGELHA 369

Query: 259 --------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-- 308
                   +D+AMRW DGY   +  F N +    GG H+ G    +T+QI   VE +   
Sbjct: 370 QKVTRDCAVDIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARK 429

Query: 309 ---GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                K     V  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +    
Sbjct: 430 LKVNLKDSNMKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFG 489

Query: 366 AWLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             +       K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   +
Sbjct: 490 EMITGSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGN 549

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +
Sbjct: 550 DDVAELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVV 609

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G G   FDI + RY+KII+MTDADVDGAHIR LLLT F+R M  LI +G +Y   PPL
Sbjct: 610 GAGSGAS-FDIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPL 668

Query: 542 YGITRGK--SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           + I        +Y+      E       L  +   + D           +    A     
Sbjct: 669 HRIALTGAHKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMD 728

Query: 600 LIKDFYPNHDKTFIEQA 616
                         EQA
Sbjct: 729 PRTRMLRRIRMEDAEQA 745



 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + RK I+    +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 677 HKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 736

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA QA+++FS LMGD+V PR+ FI EN+
Sbjct: 737 IRMEDAEQANEIFSLLMGDDVPPRKAFIVENA 768


>gi|188037403|gb|ACD46318.1| DNA gyrase subunit B [Providencia burhodogranariea]
 gi|188037447|gb|ACD46338.1| DNA gyrase subunit B [Providencia burhodogranariea]
          Length = 270

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 156/273 (57%), Positives = 197/273 (72%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H+EEGISAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++
Sbjct: 1   IHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSS 205
           E  + +G+    L V G   + TGT V F PS D F    +F YD L  RLRELSFLNS 
Sbjct: 61  EQVYSHGVPQGALTVVGET-DQTGTFVRFWPSYDTFKTVTEFEYDILAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I LIDKR  +       Y+GGI+AFV YL R+K P+  S       +D I ++++M+W
Sbjct: 120 VSIRLIDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGIGVEVSMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K    KK K S  GDD REG
Sbjct: 178 NDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMDKEGYHKKSKVSATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|306822520|ref|ZP_07455898.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
           dentium ATCC 27679]
 gi|304554065|gb|EFM41974.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
           dentium ATCC 27679]
          Length = 781

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 98/244 (40%), Positives = 144/244 (59%), Gaps = 27/244 (11%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
           ++   +Y A S+ +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G  + 
Sbjct: 3   SMAKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGACNH 61

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  SGGLHGV
Sbjct: 62  IVVTLHSDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGV 121

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPL 159
           G SVVNALSS L + + R+G  + MSF  G                             L
Sbjct: 122 GSSVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTEL 181

Query: 160 VVTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
            + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE
Sbjct: 182 EIIGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPE 241

Query: 218 PREI 221
             + 
Sbjct: 242 TGDE 245



 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/437 (31%), Positives = 206/437 (47%), Gaps = 35/437 (8%)

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS------------- 258
            +R    R     + GG++ FV +L +     +    RI G    +              
Sbjct: 315 RQRYGHARVEEFCHNGGVKDFVDFLSKG--EAVSDIWRITGDDTYVEETQAVGEGGELHA 372

Query: 259 --------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-- 308
                   +D+AMRW DGY   +  F N +    GG H+ G    +T+QI   VE +   
Sbjct: 373 QKVTRDCAVDIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARK 432

Query: 309 ---GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                K     V  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +    
Sbjct: 433 LKVNLKDSNMKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFG 492

Query: 366 AWLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
             +       K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   +
Sbjct: 493 EMITGSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGN 552

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
              +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +
Sbjct: 553 DDVAELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVV 612

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G G G   FDI + RY+KII+MTDADVDGAHIR LLLT F+R M  LI +G +Y   PPL
Sbjct: 613 GAGSGAS-FDIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPL 671

Query: 542 YGITRGK--SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           + I        +Y+      E       L  +   + D           +    A     
Sbjct: 672 HRIALTGAHKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMD 731

Query: 600 LIKDFYPNHDKTFIEQA 616
                         EQA
Sbjct: 732 PRTRMLRRIRMEDAEQA 748



 Score =  138 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + RK I+    +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 680 HKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 739

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA QA+++FS LMGD+V PR+ FI EN+
Sbjct: 740 IRMEDAEQANEIFSLLMGDDVPPRKAFIVENA 771


>gi|112732544|dbj|BAF03049.1| DNA gyrase subunit B [Pasteurella pneumotropica]
          Length = 354

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 208/357 (58%), Positives = 267/357 (74%), Gaps = 3/357 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L+L I+R+G+++E  +  G    PL + G     TGT V F PS DIF++ 
Sbjct: 1   SVVNALSDKLQLTIRRQGHVHEQFYHLGEPQMPLTIIGDTE-ATGTSVRFWPSPDIFAIT 59

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+Y  L  RLRELSFLNS V I L+DKR          Y+GGI+AFV YL+++K P+  
Sbjct: 60  TFDYKILAKRLRELSFLNSGVSIRLVDKRDGTE--DHFHYEGGIQAFVEYLNKNKNPIHP 117

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + SY+E
Sbjct: 118 KPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSLNSYME 177

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ + 
Sbjct: 178 NEGLLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKMQ 237

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  S
Sbjct: 238 EYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS 297

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           EL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG
Sbjct: 298 ELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALG 354


>gi|71833756|emb|CAI94317.1| gyrase B [Helicobacter bilis]
 gi|71833760|emb|CAI94319.1| gyrase B [Helicobacter bilis]
          Length = 368

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 157/371 (42%), Positives = 231/371 (62%), Gaps = 3/371 (0%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I +   IY+  F  GI    L + G      GT + F P 
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETK-KHGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            +I  + +F+   L  R +E+++L   ++I   D+R           +GG+  F+  +++
Sbjct: 60  PEIMEITEFDSTILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHF--EGGLSQFIEDINK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                         +  +  I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R
Sbjct: 118 KTLITQILSFEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V+GDD REG  ++++ K+ DP+F  QTK KL SS V+ +V+ 
Sbjct: 178 AILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQK 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + +S + EE+P +AK+I++KVL A+  R+AA+RARDLTR+   + +++LPGK ADC 
Sbjct: 238 LTYEKMSKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQ 297

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP + E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R D +L S+EI  +I
Sbjct: 298 SKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMI 357

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 358 TAFGCGIGDEF 368


>gi|71833798|emb|CAI94338.1| gyrase B [Helicobacter salomonis]
          Length = 365

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 238/371 (64%), Gaps = 6/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I REG IY   F  GI   PL V G+     GT + F P 
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYREGQIYRQEFEKGIATTPLEVVGTTK-KRGTTIEFFPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             I  V  F+   L+ R +E+++LN+  +I+L     P     +  Y+ G++ F+    +
Sbjct: 60  PQIMEVIAFDSAVLKRRFQEMAYLNN--KITLEFHDQPAQVHESYHYQDGLKQFIVDSQK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
              PL+   I      + + +++A+ +N+ Y E    F NNI   +GGTH SG +  L++
Sbjct: 118 --TPLISEIIAFNAQVEGMEVEVALAYNESYEEQTFSFVNNIRTTEGGTHESGFKMGLSK 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+++S  S++   SV+ +D REG ++++S+K+ DP+F  QTK KL SS VR +V  
Sbjct: 176 AILNYIQESGSSRES-ASVVQEDVREGLSAIISLKLLDPQFEGQTKSKLGSSFVRPIVAK 234

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            V + ++ + EE+P  AK IV+KVL A+  R+AA++AR++TR+K  L + +LPGKLADC 
Sbjct: 235 LVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLPGKLADCQ 294

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP++SEL+LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+A   K+L S+EI  +I
Sbjct: 295 SKDPRESELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKSEEIKNMI 354

Query: 479 TALGTGIGQDS 489
           TA G G+G++ 
Sbjct: 355 TAFGCGVGKEF 365


>gi|83317979|ref|XP_731396.1| DNA topoisomerase II [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491424|gb|EAA22961.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
          Length = 1489

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 136/686 (19%), Positives = 252/686 (36%), Gaps = 103/686 (15%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS N        +  Q    ++ +  RP  YIG  +  +                     
Sbjct: 1   MSKNKTI----EERYQKKSQIEHILLRPDTYIGSVEMHTQLLWIWNKEKSRMVQKNITYV 56

Query: 40  -GLHHMIYEVLDNAID------ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEE 91
            GL+ +  E++ NA D      E  E     I + +N +    +V ++G GIP D+HKE 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINREQKKISVYNDGEGIPVDIHKEM 116

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI---KREGNIYEM 148
            I    +I   L     ++    +++GG +G G  + N  S    ++     R    ++M
Sbjct: 117 NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFTVQCGDSSR-KKEFKM 175

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++   +         +       +VTF P  D F + + + D    L  R+ +L+   + 
Sbjct: 176 TWFQNMSKFSDPHIKNYNGKDYVKVTFKPDLDKFGMSELDDDIECLLHKRVYDLAGTCN- 234

Query: 206 VQISLIDKRSPEPREITM------------------------------------------ 223
           V++ L   R P     +                                           
Sbjct: 235 VRVYLNGTRLPVKDFKSYVDLYLRDNNTPNTNPSVSKNALNGNTDASVNKTIDNLDVSIS 294

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCF 276
              GG    ++     ++    +    +   + +         ++ +   DG     + F
Sbjct: 295 HENGGGAGDITPTKTTEENGNSNFNNNKYEEEIVKIHEKQHRWEIVISKTDGSQFQQVSF 354

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N+I    GGTH+S +   L   + S  +K+    K    +     R      ++  + +
Sbjct: 355 VNSICTTKGGTHVSYIVDQL---LNSLSKKANAKNKGGMEIKAGHIRNHLWVFVNCLIVN 411

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F SQTKE L + + +   +  + D     + +  + +  I+      + V    +   
Sbjct: 412 PTFDSQTKETLTTKQAKFGSKCTLTDKTINNVLKSSILSN-ILLWAQAKAQVELRKKMKA 470

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAIL 451
             ++ +  +          D   +  ++  L L EGDSA      G +  GR R    + 
Sbjct: 471 GSSKARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDR--YGVF 528

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGI-GQDSFDINKLRYHKIIIMTDADVDG 510
           PL+GK+LNV  A F +++ ++EI  +   +G  I  ++  DI  LRY  ++IMTD D DG
Sbjct: 529 PLKGKLLNVRDASFKQLMDNKEIQNIFKIMGLDITDKNKQDIKGLRYGSLMIMTDQDYDG 588

Query: 511 AHIRTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           +HI+ LL+    +  PSL+ H GFL     P+  + +G            E +  N +L 
Sbjct: 589 SHIKGLLINMIHKFWPSLLKHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWKENTNLV 648

Query: 570 EEIELFCDSKGVISKNDLRNFIDDAL 595
                +    G  +  + + +  D  
Sbjct: 649 GWKIKYYKGLGTSTDKEFKQYFSDIQ 674


>gi|224283383|ref|ZP_03646705.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|311064623|ref|YP_003971348.1| DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
 gi|313140537|ref|ZP_07802730.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|310866942|gb|ADP36311.1| GyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
 gi|313133047|gb|EFR50664.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
          Length = 770

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 100/243 (41%), Positives = 144/243 (59%), Gaps = 27/243 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y ADS+ +L+GLDAV+KRP MYIG TD + GL H ++E++DNA+DE+L G  D I
Sbjct: 1   MPKQEYGADSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNAVDEALAGACDHI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           TVTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  +GGLHGVG
Sbjct: 60  TVTLHDDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  + M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYSDTDPEHPSPDAPFKRTRKNRPTELE 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + G  +   TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+  PE 
Sbjct: 180 IIGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLRITVIDENVPET 239

Query: 219 REI 221
            + 
Sbjct: 240 GDD 242



 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 135/439 (30%), Positives = 209/439 (47%), Gaps = 34/439 (7%)

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN----------------- 256
           R    R     + GG++ FV +L       +    RI G                     
Sbjct: 306 RHTHARVEEFRHTGGVKDFVDFLSAG--EAVSDIWRITGEDTYEEETQAVGEGGELHAQK 363

Query: 257 ----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF---- 308
                 +D+AMRW +GY   +  F N +    GG H+ G    LT+QI   VE +     
Sbjct: 364 VTRKCGVDIAMRWTNGYDTTMRSFVNVVETPGGGMHVDGFLMGLTKQIRKAVEDNARKLK 423

Query: 309 -GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K     V  DD   G  +V+++++ +P+F  QTK+ L ++ V+ +V    +      
Sbjct: 424 VNLKDSNMRVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAPVKPIVTRMTDKQFGEM 483

Query: 368 LEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           +       K     +++K++     R  AR+ +++TRRK  L+ A++P KL+DC   +  
Sbjct: 484 ITGSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESAAMPSKLSDCQPGNDD 543

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +ML+++E   +I  +G 
Sbjct: 544 VAELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLNNKECAAIIQVVGA 603

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
           G G   FDI + RYHK+I+MTDADVDGAHIR LLLT F+R M  LI +G++Y   PPL+ 
Sbjct: 604 GSGAG-FDIEQSRYHKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHR 662

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I    S +        +D L  +    E      +  +     L   +D     D  +  
Sbjct: 663 IALAGSHKGEFIYTYSDDELAGRLADLERRHISYNPDIQRYKGLGE-MDADQLADTTMDP 721

Query: 604 FYPNHDKTFIEQAVISGVF 622
                 +  +E A  +   
Sbjct: 722 RTRMLRRIRMEDAAQASEI 740



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + R+ IS    +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 669 HKGEFIYTYSDDELAGRLADLERRHISYNPDIQRYKGLGEMDADQLADTTMDPRTRMLRR 728

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA+QA ++FS LMGD+V PR+ FI +N+
Sbjct: 729 IRMEDAAQASEIFSLLMGDDVPPRKAFIVDNA 760


>gi|62944556|gb|AAY22126.1| DNA gyrase subunit B [Zymomonas mobilis subsp. pomaceae]
          Length = 349

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 209/349 (59%), Positives = 272/349 (77%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS +L+L + R+G  + M F +G+   PL + G A    GT+V FLPS   F + 
Sbjct: 1   SVVNALSEYLELTVWRDGFEHSMRFEHGVAVKPLEIVGEAAGKRGTKVRFLPSPATFKIT 60

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F++  L+HR REL+FLNS V++ L D R  EP+ + +FY+GGI AFV +LDR K  L+ 
Sbjct: 61  EFDFSKLEHRYRELAFLNSGVRLQLTDTRPEEPKTVELFYEGGIAAFVKWLDRAKTALIP 120

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ IQG RD++ I++A+ WND Y+E VLCFTNNIPQ+DGGTHL+  R+ALTR + +Y E
Sbjct: 121 EPVAIQGDRDDVGIEVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAFRAALTRTLNNYAE 180

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           KS   KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR  +ES + D L+
Sbjct: 181 KSGFLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPLESLMADKLA 240

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WLEE+P  AK IV+K++DA+  R+AA+RAR+LTRRKGV+DIASLPGKLADC ERDP KS
Sbjct: 241 EWLEENPAHAKTIVQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLADCQERDPTKS 300

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ELF+VEGDSAGGSAKQGR+R NQAILPL+GKILN ER+R D+MLSS+E+
Sbjct: 301 ELFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEV 349


>gi|149191295|ref|ZP_01869550.1| DNA topoisomerase IV subunit B [Vibrio shilonii AK1]
 gi|148834893|gb|EDL51875.1| DNA topoisomerase IV subunit B [Vibrio shilonii AK1]
          Length = 252

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 94/248 (37%), Positives = 151/248 (60%), Gaps = 12/248 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++      Y+A +I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MTEQ-----YNAGAIEVLNGLEPVRRRPGMY---TDTVRP-NHLGQEVIDNSVDEALAGH 51

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  V D+GRG+P D+H EE IS  E+I  +LHAGGKF+ K+Y+ SGGL
Sbjct: 52  ASKVQVILHADQSLEVIDDGRGMPVDIHPEEKISGVELIFCKLHAGGKFSNKNYQFSGGL 111

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSS 179
           HGVG+SVVNALS  +++ ++R+G +YEM+F NG     L VTG+ G    GT V F P +
Sbjct: 112 HGVGISVVNALSKRVEVTVRRDGQVYEMAFENGNKVEELTVTGTCGRRNKGTSVHFWPDA 171

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F   +F+   L + LR  + L   ++I+  DK + +  +     + G++ +++   + 
Sbjct: 172 SYFDSANFSVTRLINNLRAKAVLCPGLEITFTDKVNNKDYKWFY--EDGLKDYLAECVKV 229

Query: 240 KKPLMQSP 247
            +  + + 
Sbjct: 230 MRFFLSNH 237


>gi|306451393|gb|ADM88872.1| DNA gyrase subunit B [Sphaerotilus natans subsp. natans]
          Length = 400

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 207/384 (53%), Positives = 277/384 (72%), Gaps = 20/384 (5%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163
           VSGGLHGVGVS VN LS WL+L ++R+G ++++ F  G+              +P+ VTG
Sbjct: 1   VSGGLHGVGVSCVNGLSKWLRLTVRRDGRVHQIDFRKGVPQDRVIELRDGVETSPMRVTG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              +  GTEV FLP ++IF   + F+YD L  RLRELSFLN+ V+I L+D+R+   +E  
Sbjct: 61  ET-DKRGTEVHFLPDTEIFQQNNEFHYDILAKRLRELSFLNNGVKIRLVDERNG-GKEDN 118

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFT 277
             Y GG++ FV ++++ KK L  +     G +       I +++AM+WND + E+VLCFT
Sbjct: 119 FAYAGGVKGFVEFVNKGKKVLHPNIFHAVGEKQSDQGTTIGVEVAMQWNDAFSESVLCFT 178

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+GLR+A+TR I  Y+E +  +KK K  + G+D REG   V+S+K+P+P
Sbjct: 179 NNIPQRDGGTHLTGLRAAMTRVINKYIEDNDIAKKAKVEISGEDMREGLACVVSVKVPEP 238

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEVR+ VE  V+  L+ WL E+P +AK I  K++DA+  RDAAR+AR+
Sbjct: 239 KFSSQTKDKLVSSEVRAPVEDIVSRLLTDWLLENPTDAKTICGKIVDAARARDAARKARE 298

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQGR R+ QAILPLRGKI
Sbjct: 299 MTRRKGVLDGLGLPGKLADCQEKDPTLCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKI 358

Query: 458 LNVERARFDKMLSSQEIGTLITAL 481
           LNVERAR++K+LSS EI TLITAL
Sbjct: 359 LNVERARYEKLLSSNEILTLITAL 382


>gi|319958722|gb|ADV90531.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
 gi|319958728|gb|ADV90534.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
 gi|319958750|gb|ADV90545.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 366

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 176/368 (47%), Positives = 256/368 (69%), Gaps = 3/368 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF     ++Y
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETIVYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  +   
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGI 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  +L 
Sbjct: 180 FKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLRY 497
           F++ K RY
Sbjct: 359 FNLEKARY 366


>gi|125540787|gb|EAY87182.1| hypothetical protein OsI_08583 [Oryza sativa Indica Group]
          Length = 1486

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 110/527 (20%), Positives = 205/527 (38%), Gaps = 49/527 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            +  Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 29  EEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVYEDGAMVSRSVTYVPGLYKIFDEILVN 88

Query: 52  AIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + V ++ D G  +V +NG GIP ++H+EEG+   E+I   L  
Sbjct: 89  AADNKQRDPSM----DSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPEMIFGHLLT 144

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGI-LDNPLVVT 162
              ++    K +GG +G G  + N  S+   +     R    Y+  F   +   +   +T
Sbjct: 145 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSENMGKKSEPQIT 204

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                +  T VTF P    F++     D +    + +  +  ++  ++  +   +   + 
Sbjct: 205 KCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRKRVVDMAGTLGKTVKVELDHQKVPVH 264

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             +   ++ ++    + +  + + P   Q   D   + +++          + F N I  
Sbjct: 265 -SFSDYVKLYIKSASKDRDDVNELPSISQKVNDRWEVCVSLSEG---QFQQVSFVNRIAT 320

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH+  + + +   + + V K   +   K        +      ++  + +P F SQ
Sbjct: 321 IKGGTHVDYVTNQIATHVMNIVNKRNKNAHMKAHN----VKSHLWVFVNALIDNPAFDSQ 376

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L + +      SF +    +      + +  IV  +L  +  + +    +    ++
Sbjct: 377 TKETLTTRQA-----SFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKELQKTDGSKR 431

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             L              +D     L L EGDSA   A  G S   R+   + PLRGK+LN
Sbjct: 432 SRLTGIPKLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFPLRGKLLN 491

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
           V  A   +++ + EI  +   LG   G+       LRY  ++IMTD 
Sbjct: 492 VREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQ 538


>gi|330971530|gb|EGH71596.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 228

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 105/225 (46%), Positives = 147/225 (65%), Gaps = 6/225 (2%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   SSY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MA-NPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L V G+    +TGT V F P  
Sbjct: 116 HGVGISVVNALSTRVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDP 175

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             F    F+   L+H L+  + L   + +S  DK S E  E    
Sbjct: 176 KYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYE 220


>gi|308152483|dbj|BAJ22220.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 423

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 183/426 (42%), Positives = 252/426 (59%), Gaps = 38/426 (8%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++       PL   G A   TGT
Sbjct: 1   DAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKP-GPLEK-GDATRKTGT 58

Query: 172 EVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
            V F P  DIF+    FN +T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDANGDEDA 118

Query: 217 --------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
                               +P+  T  Y  G+  ++ +L+R K+ +  + I      + 
Sbjct: 119 PATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEG 178

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    
Sbjct: 179 HEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGK 238

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAK
Sbjct: 239 LTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAK 298

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           IIVKK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAG
Sbjct: 299 IIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAG 358

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLR
Sbjct: 359 GSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLR 417

Query: 497 YHKIII 502
           YHKI++
Sbjct: 418 YHKIVL 423


>gi|118201804|gb|ABK79715.1| DNA gyrase subunit b [Roseovarius tolerans]
          Length = 357

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 214/357 (59%), Positives = 264/357 (73%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F  G    PL V G A    GTEV FL S + FS  +++
Sbjct: 1   NALSEWLELRIWRNGKEHVARFEGGFTTEPLRVVGDANGHKGTEVRFLASLETFSNLEYS 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  E  E  +FY+GG++ FV YLDRHK P M  PI
Sbjct: 61  FETLEKRLRELAFLNSGVRIILRDERPAEHLESELFYEGGVKEFVKYLDRHKTPAMPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G RD I I++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + + 
Sbjct: 121 FITGERDEIGIEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRTINAYAQTTG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  +N+ L+ W 
Sbjct: 181 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLMNEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK+IV K+++A+  R+AAR+AR+LTRRK  +D+  L GKL DCS +DP K+ELF
Sbjct: 241 EENPQVAKVIVSKIIEAAHAREAARKARELTRRKNPMDVNFLAGKLKDCSSKDPSKTELF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|321398489|emb|CAM69466.2| DNA topoisomerase ii [Leishmania infantum JPCM5]
          Length = 1252

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 129/564 (22%), Positives = 217/564 (38%), Gaps = 56/564 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGD----TDG------------------ESGLHHMIYEVLDNA 52
            Q     D +  RP MYIG     TD                     GL+ +  E+L NA
Sbjct: 9   YQKKTQHDHILTRPDMYIGTIEPVTDDIWVYDDAENTMKQRKCTWTPGLYKIFDEILVNA 68

Query: 53  IDESLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
            D  +    G   +I V +  +    V +NG GIP   H+E  +   E+I   L     +
Sbjct: 69  ADNKVRDPIGQ-TVIRVWM-TENYVRVYNNGEGIPIQKHREHDLWVPEMIFGHLLTSSNY 126

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           + +  KV+GG +G G  + N  S   ++     R    + M + N +L +   V     +
Sbjct: 127 DDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWANNMLQHDDPVIVPCDS 186

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
              T VTF P   +F V  F+ D L    R +  +            + +  +  +  + 
Sbjct: 187 ADYTMVTFYPDFALFHVDKFSEDMLLMMKRRVYDVAG---------CTDKTLKCFLNDER 237

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                          + +       SR N   ++ +R ++   + V  F N+I    GGT
Sbjct: 238 IACTTFPEYVDLYPTMGEERKAASYSRVNDRWEVCVRVSNIGPQQV-SFVNSIATTRGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+  +   +  ++    +     KK K  V     R      ++  + +P F SQTKE L
Sbjct: 297 HVKYIMDQIISKVVEQAK-----KKKKTDVKPHMIRPHIFLFVNCLIENPGFDSQTKETL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDAARRARDLTRRKGVL 405
            + + +      + + +  ++    +  + +       +           R        L
Sbjct: 352 NTVKSKFGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMASKMRSSDRKQIMGIPKL 411

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVER 462
           D A+  G       +   +  L L EGDSA      G   + R+   + PLRGK LNV  
Sbjct: 412 DDANEAGG------KHSHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVRE 465

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A   K+ + +EI  ++  +G  I Q   + + LRY  ++IM+D D DG+HI+ LL+ F  
Sbjct: 466 ASLKKLAACEEIQCVMKIMGLDIRQKYENADGLRYGHLMIMSDQDHDGSHIKGLLINFIH 525

Query: 523 RQMPSLIH-NGFLYIIKPPLYGIT 545
              P+L+   GFL     P+    
Sbjct: 526 CFWPNLLRVPGFLQQFITPIVKAR 549


>gi|146092354|ref|XP_001470271.1| DNA topoisomerase ii [Leishmania infantum]
          Length = 1253

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 129/564 (22%), Positives = 217/564 (38%), Gaps = 56/564 (9%)

Query: 15  IQILKGLDAVKKRPSMYIGD----TDG------------------ESGLHHMIYEVLDNA 52
            Q     D +  RP MYIG     TD                     GL+ +  E+L NA
Sbjct: 9   YQKKTQHDHILTRPDMYIGTIEPVTDDIWVYDDAENTMKQRKCTWTPGLYKIFDEILVNA 68

Query: 53  IDESLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
            D  +    G   +I V +  +    V +NG GIP   H+E  +   E+I   L     +
Sbjct: 69  ADNKVRDPIGQ-TVIRVWM-TENYVRVYNNGEGIPIQKHREHDLWVPEMIFGHLLTSSNY 126

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
           + +  KV+GG +G G  + N  S   ++     R    + M + N +L +   V     +
Sbjct: 127 DDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWANNMLQHDDPVIVPCDS 186

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
              T VTF P   +F V  F+ D L    R +  +            + +  +  +  + 
Sbjct: 187 ADYTMVTFYPDFALFHVDKFSEDMLLMMKRRVYDVAG---------CTDKTLKCFLNDER 237

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                          + +       SR N   ++ +R ++   + V  F N+I    GGT
Sbjct: 238 IACTTFPEYVDLYPTMGEERKAASYSRVNDRWEVCVRVSNIGPQQV-SFVNSIATTRGGT 296

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+  +   +  ++    +     KK K  V     R      ++  + +P F SQTKE L
Sbjct: 297 HVKYIMDQIISKVVEQAK-----KKKKTDVKPHMIRPHIFLFVNCLIENPGFDSQTKETL 351

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM--VRDAARRARDLTRRKGVL 405
            + + +      + + +  ++    +  + +       +           R        L
Sbjct: 352 NTVKSKFGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMASKMRSSDRKQIMGIPKL 411

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLRGKILNVER 462
           D A+  G       +   +  L L EGDSA      G   + R+   + PLRGK LNV  
Sbjct: 412 DDANEAGG------KHSHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVRE 465

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A   K+ + +EI  ++  +G  I Q   + + LRY  ++IM+D D DG+HI+ LL+ F  
Sbjct: 466 ASLKKLAACEEIQCVMKIMGLDIRQKYENADGLRYGHLMIMSDQDHDGSHIKGLLINFIH 525

Query: 523 RQMPSLIH-NGFLYIIKPPLYGIT 545
              P+L+   GFL     P+    
Sbjct: 526 CFWPNLLRVPGFLQQFITPIVKAR 549


>gi|27530793|dbj|BAC54044.1| DNA gyrase subunit B [Gordonia alkanivorans]
          Length = 424

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 182/427 (42%), Positives = 251/427 (58%), Gaps = 38/427 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWTQAYSYAKP-GALEQ-GDATRKTG 58

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------- 216
           T V F P  DIF+    FN +T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  TTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDED 118

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                +P+  T  Y  G+  ++ +L+R K+ +  + I      +
Sbjct: 119 APTTDVAEVVLSETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGE 178

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+   
Sbjct: 179 GHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDG 238

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EA
Sbjct: 239 KLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEA 298

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSA
Sbjct: 299 KIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSA 358

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KL
Sbjct: 359 GGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKL 417

Query: 496 RYHKIII 502
           RYHKI++
Sbjct: 418 RYHKIVL 424


>gi|294963312|gb|ADF50143.1| DNA gyrase subunit B [Bacillus axarquiensis]
          Length = 361

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 173/359 (48%), Positives = 248/359 (69%), Gaps = 2/359 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALS+ L + + R+G I+   +  G+  + L V G   + TGT   F+P  +IF+    +
Sbjct: 2   NALSTELDVTVHRDGKIHRQVYNRGVPVSDLEVIGETDH-TGTTTHFVPDPEIFTETTEY 60

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + P
Sbjct: 61  EYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEP 120

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  K 
Sbjct: 121 IYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKK 180

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  +
Sbjct: 181 GLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAALETF 240

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           + E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL
Sbjct: 241 MLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISEL 300

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           ++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGI 
Sbjct: 301 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIE 359


>gi|211927055|dbj|BAG82780.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 420

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 184/423 (43%), Positives = 250/423 (59%), Gaps = 34/423 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ ++L I   G  +E ++       PL V G+A   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGYHWEQTYDYAKP-GPL-VQGAATRKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T V F    +IF    ++ +T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVRFWADPEIFETTTYSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDDDT 118

Query: 222 ----------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
                                 T  Y  G+  ++ +L+R K P+ QS I          +
Sbjct: 119 AEKPKNAEEEASTPAVTQPRTRTYHYPDGLVDYIKHLNRTKTPIHQSVIGFTAKGTGHEV 178

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + G
Sbjct: 179 EIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLSG 238

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ LS W E +P EAKIIV
Sbjct: 239 DDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLSHWFEANPAEAKIIV 298

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           KK +D++  R AARRAR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSA
Sbjct: 299 KKAVDSAQARLAARRARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSA 358

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           K GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHK
Sbjct: 359 KSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHK 417

Query: 500 III 502
           I++
Sbjct: 418 IVL 420


>gi|66271236|gb|AAY43831.1| DNA gyrase subunit B [Vibrio diazotrophicus]
          Length = 337

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 194/339 (57%), Positives = 259/339 (76%), Gaps = 3/339 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  + L I R G+I+  ++ +G+   PL V G     TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSEKVLLTIYRGGHIHTQTYRHGVPQAPLSVVGDTE-KTGTTVRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F+  +F+YD L  RLRELSFLNS V I LID+R  E ++    Y+GGI+AFV++L+
Sbjct: 60  SADTFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKQDHFMYEGGIQAFVTHLN 118

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R+K P+ +        R++ IS+++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R+AL
Sbjct: 119 RNKTPIHEKVFHFNSEREDGISVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRAAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 179 TRTLNTYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 238

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           ES + + L+ +L EHP EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 239 ESAMGEKLNEFLAEHPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 298

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           C E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 299 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 337


>gi|197700097|gb|ACH72050.1| DNA gyrase subunit B [Ruegeria mobilis]
          Length = 357

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 213/357 (59%), Positives = 271/357 (75%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F  G     L V G  G+ TGTEV FL S+D FS  +++
Sbjct: 1   NALSDWLELRIWRSGKEHVARFERGDTVKHLTVVGDCGDRTGTEVRFLASTDTFSNLEYS 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I + D+R  E  E  +FY+GG+  FV YLDR K P+M +PI
Sbjct: 61  FETLEKRLRELAFLNSGVRIVVTDERPAERLESELFYEGGVNEFVKYLDRSKTPVMDAPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G +D+I I++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 121 YIKGEKDDIGIEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES + + L+ W 
Sbjct: 181 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLMGEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK +V K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPQVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|148971361|gb|ABR20218.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 432

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 166/439 (37%), Positives = 227/439 (51%), Gaps = 25/439 (5%)

Query: 97  EVIMTRLHAGGKFNQKS----YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           EVIMT LHAGGKF++KS    Y  SGGLHGVGVSV NALS  L++ +KREG ++ M+F +
Sbjct: 1   EVIMTVLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMTFGD 60

Query: 153 GILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           G +  PL V G+ G  +TGT V   P    F     N   L+  LR  + L   V + L 
Sbjct: 61  GFVIEPLAVQGTCGARNTGTRVRVWPDPRYFDEPQINLIELERGLRSKAVLLPGVSVRLR 120

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID----------- 260
            +      E T  Y GG+E +++        L+       G R     +           
Sbjct: 121 KEGDGRTLEQTWHYPGGLEQYLTERLGEDPLLIPV---FTGDRFFGVEEGDSFAPGEGAS 177

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
            A  W++        F N IP   GGTH +GLR+ L   + S++E      +    +  +
Sbjct: 178 WAFSWHETRSLQGESFVNLIPTPLGGTHEAGLRTGLFEALKSFIEHHGLLPRG-VRLQLE 236

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D       +LSI+M DP+F  QTK+KL S E   +V + V D    WL +H    K +V 
Sbjct: 237 DVSARLQFILSIRMLDPQFQGQTKDKLTSREALKLVSTLVRDPFEHWLNQHVEHGKALVD 296

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
            V+  +M R  + +      ++    +A LPGKL DC      + ELFLVEGDSAGGSAK
Sbjct: 297 LVIRQAMARMKSGQK---IEKRKSSGVAVLPGKLTDCESERIDERELFLVEGDSAGGSAK 353

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYH 498
             R++  QAILPLRGK+LN       ++ ++ EI  +  ALG         ++  + RY 
Sbjct: 354 MARNKLTQAILPLRGKVLNSFEVEQGRLFANTEIHDIAVALGIDPHGRGEPVDLSQRRYD 413

Query: 499 KIIIMTDADVDGAHIRTLL 517
           +IIIMTDADVDG+HIRTLL
Sbjct: 414 RIIIMTDADVDGSHIRTLL 432


>gi|297515923|gb|ADI44312.1| gyrase B [Micromonospora sp. RTIII77]
          Length = 371

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 166/373 (44%), Positives = 240/373 (64%), Gaps = 7/373 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ + + I+++G ++  S+ N    +PL   G   N TG+ V+F 
Sbjct: 1   SGGLHGVGVSVVNALSTRMFVEIQKDGYVWRQSYTNSKP-SPLEK-GETTNTTGSSVSFW 58

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----DKRSPEPREITMFYKGGIEAF 232
           P   +F   DF ++T+  R++E +FLN  + I L      +   +PRE+T  YK GI  F
Sbjct: 59  PDPSVFETVDFAFETIYRRIQEYAFLNRGLTIQLRDERVQEEDGKPREVTFCYKNGISDF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +GGTH  G 
Sbjct: 119 VRHLNASKNPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V
Sbjct: 179 RAALTSVVNRYGADKK-LLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S V+   N+ L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PG
Sbjct: 238 KSFVQRVCNEWLVDWFDRNPGEAKLIITKATQAARARIAAQQARKLARRKSLLESGSMPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + 
Sbjct: 298 KLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNN 357

Query: 473 EIGTLITALGTGI 485
           E+  LITALGTGI
Sbjct: 358 EVQALITALGTGI 370


>gi|6729166|dbj|BAA89716.1| DNA gyrase subunit B [Actinoplanes cyaneus]
          Length = 396

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 175/400 (43%), Positives = 263/400 (65%), Gaps = 12/400 (3%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            ++YKVSGGLHGVGVSVVNALS+ + + I ++G ++   +   I     ++ G + + TG
Sbjct: 1   NQAYKVSGGLHGVGVSVVNALSTRMAVEIHKKGFVWRQQYNLSIPTE--LIKGESTDKTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMF 224
           + V F P  +IF   +F+Y T+  RL+E++FLN ++ I+  D        + EPR++T  
Sbjct: 59  STVQFWPDPNIFETVEFDYQTIYRRLQEMAFLNRALTINFTDSRPGFEDENGEPRKVTFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y  GI  FV +L+  K  + ++ I+     D   + +++AM+WN+ Y E+V  F N I  
Sbjct: 119 YSDGIADFVRHLNATKNAIHKTVIQFSTEDDEAGMGVEIAMQWNESYGESVYTFANRINT 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G RSALT  +  Y  +    K   + + G+D REG  +++S+ + +P+F  Q
Sbjct: 179 HEGGTHEEGFRSALTTIVNKYGIEKKFLK-GDQKLSGEDIREGLAAIISVTLREPQFEGQ 237

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL +++++S V+   N+ L+ W + +P +AK+I+ K   A+  R AA++AR L RRK
Sbjct: 238 TKTKLGNTDMKSFVQRVANEQLADWFDRNPADAKLIITKADQAARARIAAQQARKLARRK 297

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
            +L+  S+PGKLADC   DP+++ELF+VEGDSAGGSAKQGRS + QAILP+RGKILNVE+
Sbjct: 298 SLLESGSMPGKLADCQSTDPRETELFIVEGDSAGGSAKQGRSSKYQAILPIRGKILNVEK 357

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AR D++L + E+  LITA+GTGI  D FDI++LRYHKII+
Sbjct: 358 ARIDRVLKNNEVQALITAMGTGI-HDEFDISRLRYHKIIL 396


>gi|308152499|dbj|BAJ22228.1| DNA gyrase subunit B [Corynebacterium ammoniagenes]
          Length = 441

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 181/444 (40%), Positives = 258/444 (58%), Gaps = 55/444 (12%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY +SGGLHGVG+SVVNALS+ ++  IK +G  +   F N I    L   G+A   +G
Sbjct: 1   SDSYAISGGLHGVGISVVNALSTRVEAEIKTDGKHWYQVFNNSIP-EELQEGGNA-RGSG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----------- 219
           T++ F    +IF   +++YDT+  RL+E++FLN  + I LID+R  + +           
Sbjct: 59  TKIRFWADPEIFESVEYDYDTIARRLQEMAFLNKGLTIQLIDERVTKEQLDLEAIADAES 118

Query: 220 -----------------------------------------EITMFYKGGIEAFVSYLDR 238
                                                    ++T  Y  G+  +V +L++
Sbjct: 119 GEKQLDETSFDDEEVDDFVEEGAVTPAPVETSGSSKKKLQKKVTYHYPDGLIDYVKFLNK 178

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  +  + +      +   +++AM+WN GY E+   F N I   +GGTH  G RSALT 
Sbjct: 179 TKSAIHPTVVAFDVKGNEHEVEVAMQWNQGYKESTHTFANTINTYEGGTHEEGFRSALTS 238

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y ++    ++   S+ GDDCREG  +V+S+K+ DP+F  QTK KL +SE++  V+ 
Sbjct: 239 LMNRYAKEHKLMREKDGSLTGDDCREGLAAVVSLKVADPQFEGQTKTKLGNSEIKGFVQR 298

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            VN+ L+ W + +P EAK IV K + +S  R AAR+AR+L RRK   D+  LPGKLADC 
Sbjct: 299 AVNEHLNDWFDANPAEAKAIVNKAVASSQARVAARKARELVRRKSATDLGGLPGKLADCR 358

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DPK SEL++VEGDSAGGSAK GR    QAILPLRGKILNVE+AR DK+L + E+  +I
Sbjct: 359 TKDPKISELYIVEGDSAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAII 418

Query: 479 TALGTGIGQDSFDINKLRYHKIII 502
           TALGTGI ++ FDI KLRY+KI++
Sbjct: 419 TALGTGIHEE-FDITKLRYNKIVL 441


>gi|330801777|ref|XP_003288900.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
 gi|325081045|gb|EGC34576.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
          Length = 1162

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/608 (21%), Positives = 234/608 (38%), Gaps = 62/608 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDNAID 54
            Q  + LD +  RP  YIG T+ +                     G++ +  E+L NA D
Sbjct: 8   YQKKELLDQILLRPDTYIGSTEKQEEELWVWENERMVRRKVSFVPGIYKIFDEILVNAAD 67

Query: 55  -----ESLEGYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
                E++      I V ++  +G  +V+++G GIP  +HKE  +   E+I   L     
Sbjct: 68  NKQREETM----KFIKVEIDSANGRISVTNDGAGIPIHIHKEHKVYIPELIFGHLLTSSH 123

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFINGI-LDNPLVVTGSA 165
           ++    +++GG +G G  + N  S+   +     G   +Y+  F N +       +T  +
Sbjct: 124 YDDSEKRLTGGRNGFGAKLANIFSTKFIVECADSGSKKLYKQVFTNNMRNKEDPKITSYS 183

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREIT 222
                T++TF P    F +  F+ D +     R+ +++  N ++++SL D+         
Sbjct: 184 NKTNYTKITFYPELSRFGMVSFDEDLIALLSKRVYDIAGCNPTLKVSLNDQELGIRSFEK 243

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                  +A                 ++   + +   ++A+  +       + F N+I  
Sbjct: 244 YVNLYFPDA-------------DDAPKVYYEKVSPRWEIAVTLSTEGQFQQVSFVNSICT 290

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GGTH++   S +  +IT  V K          +     +      ++  + +P F SQ
Sbjct: 291 VKGGTHVTHALSKVISEITEAVLKK----HKGGEIKPAFVKNHLFVFVNSLIENPHFDSQ 346

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L S            +    +L++       I+  +L     ++           K
Sbjct: 347 TKETLTSKITSF---GSRCEPSEKFLKKVIDSKSGIIATILAFVEFKEQQSIKSSSKPGK 403

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
                 S     +           L L EGDSA   A  G S   +++    PL+GK+LN
Sbjct: 404 KGKVTHSKLDDASLAGSSKSADCTLILTEGDSAKTLAIAGISVVGKDHYGAFPLKGKLLN 463

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V   +  K L + EI  ++  LG        D++KLRY  ++IMTD D DG+HI+ L++ 
Sbjct: 464 VRE-QGQKALKNDEICNIMMILGLQPFVKYEDVSKLRYGHLMIMTDQDNDGSHIKGLIIN 522

Query: 520 FFFRQMPSLIHN-GFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCD 577
           F     P L+H  GFL     P+  +++               ++        +I+ +  
Sbjct: 523 FIHHFWPQLLHMPGFLVEFITPIVKVSKNGKNAISFYTLPEFLEWREKNPKGWDIKYYKG 582

Query: 578 SKGVISKN 585
                +  
Sbjct: 583 LGTSQASE 590


>gi|308153072|dbj|BAJ22125.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 422

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 183/425 (43%), Positives = 251/425 (59%), Gaps = 38/425 (8%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++       PL   G A   TGT
Sbjct: 1   DAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKP-GPLEK-GDATRKTGT 58

Query: 172 EVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
            V F P  DIF+    FN +T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDANGDEDA 118

Query: 217 --------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
                               +P+  T  Y  G+  ++ +L+R K+ +  + I      + 
Sbjct: 119 PATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEG 178

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    
Sbjct: 179 HEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGK 238

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAK
Sbjct: 239 LTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAK 298

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           IIVKK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAG
Sbjct: 299 IIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAG 358

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLR
Sbjct: 359 GSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLR 417

Query: 497 YHKII 501
           YHKI+
Sbjct: 418 YHKIV 422


>gi|294963324|gb|ADF50149.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 364

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 168/363 (46%), Positives = 251/363 (69%), Gaps = 3/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF     
Sbjct: 1   VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETIV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEE 118

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K
Sbjct: 119 PVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    
Sbjct: 179 NNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEK 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE
Sbjct: 239 FLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISE 298

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT IG
Sbjct: 299 IYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIG 358

Query: 487 QDS 489
            D 
Sbjct: 359 GDF 361


>gi|308152473|dbj|BAJ22215.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 424

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 185/427 (43%), Positives = 254/427 (59%), Gaps = 38/427 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++        L   GSA   TG
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEIQNDGYNWEQTYSYAKP-GALEQ-GSATRKTG 58

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------- 215
           T V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R               
Sbjct: 59  TTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDADGDED 118

Query: 216 --------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
                                +P+  T  Y  G+  ++ +L+R K+ +  + I      D
Sbjct: 119 GGSTEAAEVVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFNAKGD 178

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+   
Sbjct: 179 GHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDG 238

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L  W E +P EA
Sbjct: 239 KLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQRTCNEHLGHWFEANPAEA 298

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           KIIVKK +D+S  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSA
Sbjct: 299 KIIVKKAVDSSQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSA 358

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KL
Sbjct: 359 GGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKL 417

Query: 496 RYHKIII 502
           RYHKI++
Sbjct: 418 RYHKIVL 424


>gi|319958744|gb|ADV90542.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 357

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 170/358 (47%), Positives = 250/358 (69%), Gaps = 2/358 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+  ++  G+  + L + G   + TGT   F+P  +IF+    ++Y
Sbjct: 1   LSTELDVTVHRDGKIHRQTYKRGVPVSDLEIIGETDH-TGTTTHFVPDPEIFTETTEYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  K   
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGL 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  +  ++ 
Sbjct: 180 IKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAAMETFML 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGE 357


>gi|291169121|gb|ADD81987.1| DNA gyrase subunit B [Sphaerotilus hippei]
          Length = 398

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 205/383 (53%), Positives = 277/383 (72%), Gaps = 20/383 (5%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163
           VSGGLHGVGVS VN LS WL+L ++REG ++ M F  GI              +P+ ++G
Sbjct: 1   VSGGLHGVGVSCVNGLSKWLRLTVRREGQVHFMEFRQGIPQDRVIEQRDGFEISPMKISG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
              +  GTEV FLP   IF+  DF+Y+ L  RLRELSFLN+ V+I L+D+R+ +      
Sbjct: 61  ET-DKRGTEVHFLPDETIFTNIDFHYEILSKRLRELSFLNNGVKIRLVDERNNKE--DNF 117

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTN 278
            Y GG++ FV ++++ KK L  +    +G +      N+ +++AM+WN+ Y+ENVLCFTN
Sbjct: 118 AYAGGVKGFVEFVNKGKKVLHPNIFHARGDKISDNHTNVGVEVAMQWNESYNENVLCFTN 177

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR +  Y++    +KK K  + G+D REG   V+S+K+P+P+
Sbjct: 178 NIPQRDGGTHLTGLRAAMTRVMNKYIDDHEIAKKAKVEISGEDMREGLACVVSVKVPEPK 237

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR+ VE  V   L+ WL E+P++AK I  K++DA+  RDAAR+AR++
Sbjct: 238 FSSQTKDKLVSSEVRAPVEDIVGRLLTDWLLENPIDAKTICGKIVDAARARDAARKAREM 297

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKGVLD   LPGKLADC E+DP + E++LVEGDSAGGSAKQGR R+ QAILPLRGKIL
Sbjct: 298 TRRKGVLDGMGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKIL 357

Query: 459 NVERARFDKMLSSQEIGTLITAL 481
           NVE+AR++K+L+S EI TLITAL
Sbjct: 358 NVEKARYEKLLASNEILTLITAL 380


>gi|124809097|ref|XP_001348490.1| DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
 gi|23497385|gb|AAN36929.1|AE014821_16 DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
          Length = 1472

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 130/686 (18%), Positives = 252/686 (36%), Gaps = 97/686 (14%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           M+ N        +  Q    ++ +  RP  YIG  +  +                     
Sbjct: 1   MAKNKTI----EERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYV 56

Query: 40  -GLHHMIYEVLDNAID------ESLEGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEE 91
            GL+ +  E++ NA D      E  E     I + +N +    +V ++G GIP D+HKE 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEM 116

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI---KREGNIYEM 148
            I    +I   L     ++    +++GG +G G  + N  S    ++     R    ++M
Sbjct: 117 NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSR-KKEFKM 175

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++ + +         +       +VTF P  + F + + + D    L  R+ +L+   S 
Sbjct: 176 TWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDDDIESLLFKRVYDLAGTCS- 234

Query: 206 VQISLIDKRSPEPREITMFY---------------------------------------- 225
           V++ L  +R       +                                           
Sbjct: 235 VRVYLNGQRLAVKDFKSYVDLYLKDNSNDNKNNKGQNDNNNNNNNNNDENANQNNDNLDV 294

Query: 226 ---KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                  +   +  + +          ++        ++ +  +DG     + F N+I  
Sbjct: 295 SLSNEPADGTPTKNNNNNNNNNDEDEIVKIHEKQHRWEIVVSKSDGSQFQQVSFVNSICT 354

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG+H++ +   L   ++    K+    K    +     R      ++  + +P F SQ
Sbjct: 355 TKGGSHVNYIVEQLLSSLSK---KANAKNKGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQ 411

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L +  V+   +  ++D     + + P+ +  I+      + V    +     ++ +
Sbjct: 412 TKETLTTKPVKFGSKCILSDKTINNVLKSPILSN-ILLWAQAKAQVELKKKMKAGSSKAR 470

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKI 457
             +          D   +  ++  L L EGDSA      G +  GR +    + PL+GK+
Sbjct: 471 ERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDK--YGVFPLKGKL 528

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGI-GQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           LNV  A F +++ ++EI  +   +G  I  ++  DI  LRY  ++IMTD D DG+HI+ L
Sbjct: 529 LNVRDASFKQLMDNKEIQNIFRIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGL 588

Query: 517 LLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           L+    +  PSL+ H GFL     P+  + +G            E +  N +L      +
Sbjct: 589 LINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWKENTNLLGWKIKY 648

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLI 601
               G  +  + + +  D      + 
Sbjct: 649 YKGLGTSTDREFKQYFSDIKNHKIMF 674


>gi|2196820|gb|AAB80827.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 219/406 (53%), Positives = 289/406 (71%), Gaps = 20/406 (4%)

Query: 97  EVIMTRLHAG--GKFNQ-KSYKVSGGLHGV-----GVSVVNALSSWLKLRIKREGNIYEM 148
           EVIMT   AG   K N   +Y        V     GV VVNALS  L++ I+R G +YE 
Sbjct: 1   EVIMTVPRAGVNSKINTTDAY--------VDRSRFGVPVVNALSKKLQMTIRRAGKVYEQ 52

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
            + +G+ D P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I
Sbjct: 53  FYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGI 111

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWND 267
            L+D+R  +       Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WND
Sbjct: 112 RLVDER--DNTNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWND 169

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+ 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE+++VEGD A GSAKQGR+R+N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFACGSAKQGRNRKN 349

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           QAILPL+GKILNVE+ARFDKML SQE+ TLITA+G GIG+   D +
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITAIGCGIGRSCHDRS 395


>gi|319958752|gb|ADV90546.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 174/366 (47%), Positives = 250/366 (68%), Gaps = 3/366 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYD 190
           S+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    F+YD
Sbjct: 2   STTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFDYD 60

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
           TL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+ I
Sbjct: 61  TLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVYI 120

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
           +G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+   
Sbjct: 121 EGEKDGITIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGVF 180

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +L E
Sbjct: 181 KDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLLE 240

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL++V
Sbjct: 241 NPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYIV 300

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D F
Sbjct: 301 EGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED-F 359

Query: 491 DINKLR 496
            + K R
Sbjct: 360 TLEKAR 365


>gi|229817450|ref|ZP_04447732.1| hypothetical protein BIFANG_02713 [Bifidobacterium angulatum DSM
           20098]
 gi|229785239|gb|EEP21353.1| hypothetical protein BIFANG_02713 [Bifidobacterium angulatum DSM
           20098]
          Length = 764

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/236 (41%), Positives = 137/236 (58%), Gaps = 27/236 (11%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +    Y A  + +L+GLDAV+KRP MYIG TD + GL H ++E++DNA+DE+L G+ + I
Sbjct: 1   MAKEDYGAKDLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNAVDEALAGFCNAI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
            VTL+ DGS TV+DNGRGIP D   +  +S  EV++T+LHAG KF   SY   GGLHGVG
Sbjct: 60  VVTLHTDGSITVADNGRGIPVDKEPKTKLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLV 160
            SVVNALSS L + + R+G  Y M+F  G                             L 
Sbjct: 120 SSVVNALSSRLDIEVDRDGKTYHMAFHQGHPGVYTDADPEHPSPDAPFKRTRKNKPTELD 179

Query: 161 VTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR 214
           + G      TGT + +    +IF+   +F+Y+ L  R+R+ SFL   ++I++ID+ 
Sbjct: 180 IIGKVPPKRTGTRIRYWADPEIFNKTAEFSYEQLVDRVRQTSFLVPGLKITVIDEN 235



 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 197/379 (51%), Gaps = 12/379 (3%)

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +       +D+A+RW +GY   +  F N I    GGTH+ GL +++TRQI   VE + 
Sbjct: 354 HAEKITRTCGVDIALRWVNGYDTVMRSFVNIIETPGGGTHVDGLMNSVTRQIRKAVEANA 413

Query: 309 -----GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
                  K     V  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +  
Sbjct: 414 RKLKVNLKDSNMKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMSDKQ 473

Query: 364 LSAWLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
               +       K     +++K++     R  +R+A+++TRRK  L+ AS+P KL+DC  
Sbjct: 474 FGEMITGSKRGYKEQSNRVLEKIVGEMHARVQSRKAKEVTRRKNALESASMPAKLSDCQP 533

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
            +   +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I 
Sbjct: 534 GNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQ 593

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G G  SFDI + RYHK+I+MTDADVDGAHIR LLLT F+R M  LI NG++Y   P
Sbjct: 594 VVGAGSG-QSFDIEQSRYHKVIMMTDADVDGAHIRILLLTLFYRYMRPLIENGYVYAAVP 652

Query: 540 PLYGITRGKSLQ--YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           PL+ I    S +  ++      E       L  +   + D           +    A   
Sbjct: 653 PLHRIALTGSHKGEFIYTYSDDELAGKLAELDRKHIGYNDDIQRYKGLGEMDADQLADTT 712

Query: 598 DKLIKDFYPNHDKTFIEQA 616
                           EQA
Sbjct: 713 MDPRTRMLRRIRMEDAEQA 731



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 59/92 (64%), Gaps = 4/92 (4%)

Query: 709 CNGDKIKITGPCSLLDTIFSIGRK--GIS--MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
             G+ I       L   +  + RK  G +  +QRYKGLGEM+A QL +TT++P TR L R
Sbjct: 663 HKGEFIYTYSDDELAGKLAELDRKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRR 722

Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           +++ DA QA ++FS LMGD+V PR+ FI EN+
Sbjct: 723 IRMEDAEQASEIFSLLMGDDVPPRKAFIVENA 754


>gi|7437445|pir||T10466 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) II - malaria
           parasite (Plasmodium falciparum)
 gi|3980316|emb|CAA55900.1| DNA topoisomerase (ATP-hydrolysing) [Plasmodium falciparum]
          Length = 1397

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 130/686 (18%), Positives = 252/686 (36%), Gaps = 97/686 (14%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           M+ N        +  Q    ++ +  RP  YIG  +  +                     
Sbjct: 1   MAKNKTI----EERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYV 56

Query: 40  -GLHHMIYEVLDNAID------ESLEGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEE 91
            GL+ +  E++ NA D      E  E     I + +N +    +V ++G GIP D+HKE 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEM 116

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI---KREGNIYEM 148
            I    +I   L     ++    +++GG +G G  + N  S    ++     R    ++M
Sbjct: 117 NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSR-KKEFKM 175

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++ + +         +       +VTF P  + F + + + D    L  R+ +L+   S 
Sbjct: 176 TWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDDDIESLLFKRVYDLAGTCS- 234

Query: 206 VQISLIDKRSPEPREITMFY---------------------------------------- 225
           V++ L  +R       +                                           
Sbjct: 235 VRVYLNGQRLAVKDFKSYVDLYLKDNSNDNKNNKGQNDNNNNNNNNNDENANQNNDNLDV 294

Query: 226 ---KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                  +   +  + +          ++        ++ +  +DG     + F N+I  
Sbjct: 295 SLSNEPADGTPTKNNNNNNNNNDEDEIVKIHEKQHRWEIVVSKSDGSQFQQVSFVNSICT 354

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG+H++ +   L   ++    K+    K    +     R      ++  + +P F SQ
Sbjct: 355 TKGGSHVNYIVEQLLSSLSK---KANAKNKGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQ 411

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L +  V+   +  ++D     + + P+ +  I+      + V    +     ++ +
Sbjct: 412 TKETLTTKPVKFGSKCILSDKTINNVLKSPILSN-ILLWAQAKAQVELKKKMKAGSSKAR 470

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKI 457
             +          D   +  ++  L L EGDSA      G +  GR +    + PL+GK+
Sbjct: 471 ERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDK--YGVFPLKGKL 528

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGI-GQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           LNV  A F +++ ++EI  +   +G  I  ++  DI  LRY  ++IMTD D DG+HI+ L
Sbjct: 529 LNVRDASFKQLMDNKEIQNIFRIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGL 588

Query: 517 LLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           L+    +  PSL+ H GFL     P+  + +G            E +  N +L      +
Sbjct: 589 LINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWKENTNLLGWKIKY 648

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLI 601
               G  +  + + +  D      + 
Sbjct: 649 YKGLGTSTDREFKQYFSDIKNHKIMF 674


>gi|730968|sp|P41001|TOP2_PLAFK RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
          Length = 1398

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 130/686 (18%), Positives = 252/686 (36%), Gaps = 97/686 (14%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           M+ N        +  Q    ++ +  RP  YIG  +  +                     
Sbjct: 1   MAKNKTI----EERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYV 56

Query: 40  -GLHHMIYEVLDNAID------ESLEGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEE 91
            GL+ +  E++ NA D      E  E     I + +N +    +V ++G GIP D+HKE 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEM 116

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI---KREGNIYEM 148
            I    +I   L     ++    +++GG +G G  + N  S    ++     R    ++M
Sbjct: 117 NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSR-KKEFKM 175

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++ + +         +       +VTF P  + F + + + D    L  R+ +L+   S 
Sbjct: 176 TWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDDDIESLLFKRVYDLAGTCS- 234

Query: 206 VQISLIDKRSPEPREITMFY---------------------------------------- 225
           V++ L  +R       +                                           
Sbjct: 235 VRVYLNGQRLAVKDFKSYVDLYLKDNSNDNKNNKGQNDNNNNNNNNNDENANQNNDNLDV 294

Query: 226 ---KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                  +   +  + +          ++        ++ +  +DG     + F N+I  
Sbjct: 295 SLSNEPADGTPTKNNNNNNNNNDEDEIVKIHEKQHRWEIVVSKSDGSQFQQVSFVNSICT 354

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG+H++ +   L   ++    K+    K    +     R      ++  + +P F SQ
Sbjct: 355 TKGGSHVNYIVEQLLSSLSK---KANAKNKGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQ 411

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKE L +  V+   +  ++D     + + P+ +  I+      + V    +     ++ +
Sbjct: 412 TKETLTTKPVKFGSKCILSDKTINNVLKSPILSN-ILLWAQAKAQVELKKKMKAGSSKAR 470

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKI 457
             +          D   +  ++  L L EGDSA      G +  GR +    + PL+GK+
Sbjct: 471 ERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDK--YGVFPLKGKL 528

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGI-GQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           LNV  A F +++ ++EI  +   +G  I  ++  DI  LRY  ++IMTD D DG+HI+ L
Sbjct: 529 LNVRDASFKQLMDNKEIQNIFRIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGL 588

Query: 517 LLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           L+    +  PSL+ H GFL     P+  + +G            E +  N +L      +
Sbjct: 589 LINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWKENTNLLGWKIKY 648

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLI 601
               G  +  + + +  D      + 
Sbjct: 649 YKGLGTSTDREFKQYFSDIKNHKIMF 674


>gi|206208320|gb|ACI06116.1| DNA gyrase subunit B [Parvibaculum sp. P31]
          Length = 371

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 227/371 (61%), Positives = 292/371 (78%), Gaps = 6/371 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIF 182
           NALS WL LR+ R G  + ++F +G+ D PL V G A         TGTE+TF PSS+ F
Sbjct: 1   NALSDWLTLRVWRNGKEHLITFKDGVADAPLAVKGDAPKGADGEPVTGTEITFHPSSETF 60

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +  +F++ TL+HRLREL+FLNS V+I L D R  E +++ ++Y+GG++AFV +LDR K P
Sbjct: 61  TKTEFDFPTLEHRLRELAFLNSGVRIELTDNRHVEEKKVDLYYEGGLKAFVEFLDRTKSP 120

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L+ +PI +   R+ I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTR + +
Sbjct: 121 LVPAPITVLTEREGITVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRVVNA 180

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  ++  +K++K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVE  +++
Sbjct: 181 YASETGIAKREKVTISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVEGALHE 240

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS+W EEHP EAK IV K+ +A+  R+AAR+AR+LTRRKG LD++SLPGKLADC ERDP
Sbjct: 241 ALSSWFEEHPNEAKQIVSKIAEAAAAREAARKARELTRRKGALDVSSLPGKLADCQERDP 300

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELF+VEGDSAGGSAKQ R R NQA+LPLRGKILNVERARFDKMLSS EIGTLITALG
Sbjct: 301 SKAELFIVEGDSAGGSAKQARDRANQAVLPLRGKILNVERARFDKMLSSNEIGTLITALG 360

Query: 483 TGIGQDSFDIN 493
           TGIG+D F+I+
Sbjct: 361 TGIGRDDFNID 371


>gi|56807411|ref|ZP_00365381.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Streptococcus pyogenes M49 591]
          Length = 237

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/223 (44%), Positives = 133/223 (59%), Gaps = 3/223 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++  + DE++ G A  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVCKSNDEAVAGCASH 67

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
             V +  D S TV D+GR IP D+  + G  A E + T LHAGGKF    YKVSGGLHGV
Sbjct: 68  TKVFIEADNSITVVDDGRAIPVDIQAKTGRPAVETVFTVLHAGGKFRGGGYKVSGGLHGV 127

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182
           G SVVNALS+ L +R+ + G I+   F  G +   L V     + TGT V F P  +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               F+Y  L  R++EL+FLN  ++IS+ DK S   +E    Y
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKSSGMEQEEHFHY 229


>gi|164456611|dbj|BAF97798.1| gyrase B subunit [Photobacterium damselae subsp. damselae]
          Length = 354

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 204/356 (57%), Positives = 269/356 (75%), Gaps = 3/356 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  ++L I R G+I+   + +G+   PL V G   + TGT + F PSS+ F+   F Y+ 
Sbjct: 1   SEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTTIRFWPSSETFTNTTFQYEI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV +L+R+K P+ Q      
Sbjct: 60  LAKRLRELSFLNSGVSIKLNDER-EEGKQDHFMYEGGIQAFVEHLNRNKTPIHQKVFHFN 118

Query: 252 GSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
             R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK   S
Sbjct: 119 VEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGYS 178

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L  +L E
Sbjct: 179 KKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLGEFLLE 238

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P +AK +  K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++V
Sbjct: 239 NPGDAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIV 298

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           EGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GIG
Sbjct: 299 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGIG 354


>gi|188037295|gb|ACD46269.1| DNA gyrase subunit B [Providencia heimbachae]
          Length = 270

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 153/273 (56%), Positives = 197/273 (72%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H+EEG+SAAEVIMT LHAGGKF+  +YKVSGGLHGVGVSVVNALS  L+L I+R+G ++
Sbjct: 1   IHEEEGVSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSEKLELIIRRDGKVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSS 205
           E  + +G    PL V G   + TGT V F PS D F  + +F YD L  RLRELSFLNS 
Sbjct: 61  EQIYKHGEPQGPLTVVGET-DITGTRVRFWPSMDTFKGITEFEYDILAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I L+DKR  +       Y+GGI+AFV YL R+K P+  +       +D I +++AM+W
Sbjct: 120 VSIKLVDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHPNVFYFSTEKDGIGVEVAMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV C+TNNIPQ+DGG HL+G R+A+TR + +Y+EK    KK K S  GDD REG
Sbjct: 178 NDGFQENVYCYTNNIPQRDGGAHLAGFRAAMTRTLNNYMEKEGYQKKTKVSATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|32364160|gb|AAP80228.1| GyrB [Bibersteinia trehalosi]
          Length = 377

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 210/380 (55%), Positives = 265/380 (69%), Gaps = 7/380 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALSS L+L I+REG+I+E  +  G  + PL V G   + TGT V F PS DI
Sbjct: 1   GVGVSVVNALSSKLQLTIRREGHIHEQKYHLGEPEAPLAVIGDT-DKTGTCVRFWPSLDI 59

Query: 182 FSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F    +F Y  L++RLRELSFLNS V I L+D+R          Y+GGI+AFV YL  +K
Sbjct: 60  FKNKTEFEYAILKNRLRELSFLNSGVSIKLVDERDGTQ--DHFHYQGGIQAFVDYLINNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           K   Q+   +   ++ + +++A++W +  +E V CFTNNIPQ+DGGTHL+G R AL+  I
Sbjct: 118 KDDKQAEFLLSAEKEGVGVEIAIQWRNALNEAVYCFTNNIPQRDGGTHLTGFRGALSNSI 177

Query: 301 TSYVEK---SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           T Y++         + K  V GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR+VVE
Sbjct: 178 TKYMDSDVAKLTKDEKKIKVKGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVRTVVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           + +N+ L  +L EHP +AK IVKK L A+  R AA +AR+   RKGV  +  LPGKLADC
Sbjct: 238 TTMNEALQEYLNEHPEDAKAIVKKRLLAARGRAAAAKARETIARKGVFSLGGLPGKLADC 297

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            E DP + ELFLVEGDSAGGSAKQGR    QA+LPL+GKILNVE+ARFDKMLSSQEI  L
Sbjct: 298 HESDPSQCELFLVEGDSAGGSAKQGRDSNYQAVLPLKGKILNVEKARFDKMLSSQEITAL 357

Query: 478 ITALGTGIGQDSFDINKLRY 497
           IT  G GIG+D F+  KLRY
Sbjct: 358 ITTFGAGIGRDEFNPEKLRY 377


>gi|2196816|gb|AAB80825.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 215/406 (52%), Positives = 286/406 (70%), Gaps = 20/406 (4%)

Query: 97  EVIMTRLHAGGK--------FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM 148
           EVIMT   AG          +  +S         VGV VVNALS  L++ I+R G +YE 
Sbjct: 1   EVIMTVPRAGVNSKITTTDAYVDRSR--------VGVPVVNALSKKLQMTIRRAGKVYEQ 52

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
            + +G+ D P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I
Sbjct: 53  FYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGI 111

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWND 267
            L+D+R  +       Y+ GI AFV+YL+R+K P+ +        R++ I++++AM+WND
Sbjct: 112 RLVDERDNKN--EFFKYESGISAFVNYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWND 169

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+ 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR+A ++TRRKG LD+  LPGKLADC E+DP  SE+++VEGD AGGSAKQGR+R+N
Sbjct: 290 AREAARKACEMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           QAILPL+GKILNVE+ARFDKML  QE+ TLITA+G GIG    D +
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFFQEVATLITAIGCGIGGSGHDPS 395


>gi|294963316|gb|ADF50145.1| DNA gyrase subunit B [Bacillus axarquiensis]
          Length = 357

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 172/357 (48%), Positives = 247/357 (69%), Gaps = 2/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALS+ L + + R+G I+   +  G+  + L V G   + TGT   F+P  +IF+    +
Sbjct: 2   NALSTELDVTVHRDGKIHRQVYNRGVPVSDLEVIGETDH-TGTTTHFVPDPEIFTETTEY 60

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            YD L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + P
Sbjct: 61  EYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEP 120

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  K 
Sbjct: 121 IYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKK 180

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  +
Sbjct: 181 GLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAALETF 240

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           + E+P  AK IV K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL
Sbjct: 241 MLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISEL 300

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           ++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 301 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 357


>gi|13487311|gb|AAK27488.1|AF343325_1 DNA gyrase B [Cycloclasticus sp. NOP-122G1]
          Length = 362

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 207/365 (56%), Positives = 272/365 (74%), Gaps = 3/365 (0%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           EG+ +   +  G    PL V G     TGT + F PS   FS  +F++D L  RLRELSF
Sbjct: 1   EGSQHYQLYKKGEPVEPLKVVGPTE-KTGTSLRFKPSIGTFSNIEFHFDLLAKRLRELSF 59

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           LNS V+I L D+R+ +       Y+GGI+AFV++L+++K  + ++ I I   ++++++++
Sbjct: 60  LNSGVRIRLSDERTAKE--EIFEYEGGIKAFVNHLNKNKSQIHENIIYINVDKNDVNVEV 117

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A++WND Y EN+ C+TNNIPQ+DGGTHL+G R+ LTR +  Y+E S  +KK K +  GDD
Sbjct: 118 ALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRAGLTRTLNQYIEGSGLAKKQKVTTSGDD 177

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T+VLS+K+PDP+FSSQTK+KLVSSEV+S+VES + + L  +L E+P EAK I  K
Sbjct: 178 AREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKSIVESSLAEALQEFLLENPTEAKEIAGK 237

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           +L+A+  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SE+FLVEGDSAGGSAKQ
Sbjct: 238 MLEAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSEIFLVEGDSAGGSAKQ 297

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR R  QAILPL+GKILNVE+ARFDKMLS  E+GTLITALG GIG++ +    LRYHKII
Sbjct: 298 GRDRRTQAILPLKGKILNVEKARFDKMLSPDEVGTLITALGCGIGKEEYKPENLRYHKII 357

Query: 502 IMTDA 506
           IMTDA
Sbjct: 358 IMTDA 362


>gi|297831176|ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329310|gb|EFH59729.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1432

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 130/556 (23%), Positives = 231/556 (41%), Gaps = 60/556 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            +  Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 29  EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVNRSVTYVPGLYKIFDEILVN 88

Query: 52  AIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + V ++++    +V ++G G+P ++H+EEGI   E+I   L  
Sbjct: 89  AADNKQRDPSM----DSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLT 144

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGI-LDNPLVV 161
              ++    K +GG +G G  + N  S+   +    +G     Y+  F N +   +  V+
Sbjct: 145 SSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGKRLKKYKQVFENNMGKKSEPVI 203

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL----SFLNSSVQISLIDKRSPE 217
           T    ++  T+VTF P  + FS+ +   D +    + +      L  SV++ L  K+ P 
Sbjct: 204 TKCNKSENWTKVTFKPDLNKFSMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPV 263

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                        A     D    P +         + N   ++ +  ++G  + V  F 
Sbjct: 264 KSFTDYVDLYLKAANKLRADPDPLPRI-------TEKVNDRWEVCVSLSEGQFQQV-SFV 315

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N+I    GGTH+  +    T QIT+Y+      K    +V   + +      ++  + +P
Sbjct: 316 NSIATIKGGTHVDYV----TSQITNYIVGVVNKKNKNANVKAHNVKNHLWVFVNALIDNP 371

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
            F SQTKE L   +     +  +++     + +  +   ++       S     +  A+ 
Sbjct: 372 AFDSQTKETLTLRQSSFGSKCELSEDFLKKVGKSGVVENLLSWADFKKSKDLKKSDGAKT 431

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR---ENQAILPLR 454
                  L+ A+  G       ++ +   L L EGDSA   A  GR+        + PLR
Sbjct: 432 GRVEVEKLEDAAEAGG------KNSRLCTLILTEGDSAKPLALAGRTVLGENYYGVFPLR 485

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK+LNV  A   ++ +++EI  +   LG        +++ LRY  ++IMTD D DG+HI+
Sbjct: 486 GKLLNVREASTTQITNNKEIENIKKILGLKQNMKYDNVSSLRYGHMMIMTDQDHDGSHIK 545

Query: 515 TLLLTFFFRQMPSLIH 530
            LL+ F     PSL+ 
Sbjct: 546 GLLINFIHSFWPSLLK 561


>gi|10281018|dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 147/715 (20%), Positives = 251/715 (35%), Gaps = 36/715 (5%)

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D  +       I V ++ +     V ++G+GIP ++H +E +   E
Sbjct: 14  GLYKIFDEILVNAADNKIRDPSMKNIKVKIDPENNIIEVMNDGKGIPVEMHTKENMYIPE 73

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL 155
           +I   L     ++    KV+GG +G G    N  S+  ++       G +Y+ ++ + + 
Sbjct: 74  LIFGNLLTSSNYDDNQKKVTGGRNGFGAKWCNIFSTQFEVETADLNTGKLYKQTWTDNMT 133

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLI 211
             +   +T        T++TF P    F +   + D    L+ R+ +L     S  I L 
Sbjct: 134 NVSKPKITTLKSKKEYTKITFKPDLSKFDMDSLDDDLLAVLRRRVYDLCGTVKSCNIYLN 193

Query: 212 DKRSPEPREITM-FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
           DKR       +            S     +   +++   I     N   ++A        
Sbjct: 194 DKRLSISSFKSYVEMYVKAIRERSPEPLAEDGTLKNFTTIVHEVFNERWEVAFAVGHSTF 253

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
             V  F N+I    GGTH+  +   +  ++   + K    KK    +   + R+     +
Sbjct: 254 NQV-SFVNSIATTAGGTHVKYVSDQIINKLVDTLSKKEKGKKK-LMIKPQEVRDNMFLFI 311

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE--AKIIVKKVLDASMV 388
           +  + +P F+SQTKE+L +      V  F         +          IV K+   +  
Sbjct: 312 NCLIENPAFTSQTKEQLTTK-----VSQFGGKEKFVAGDNLISRILKTSIVDKIRAIASA 366

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---R 445
            +     +    RK  +              +      L L EG SA   A  G S   R
Sbjct: 367 NEDKALQKVDGSRKSRIKGQVSLVDANKAGTKLGHNCTLILTEGLSALNLAVAGLSVVGR 426

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIM 503
           +     PLRGK+LNV  A  D++  + EI  L   +G    +     +I +LRY  I+IM
Sbjct: 427 DYYGCFPLRGKLLNVREASTDQISKNAEINALKQIIGLQHKKHYTAENIKQLRYGHIMIM 486

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITR------GKSLQYVKDE 556
           TD D DG+HI+ L++ F     P L+   GFL     P+  +T          +      
Sbjct: 487 TDQDQDGSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVKVTVKTRGSGNNRVIPFYTM 546

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
              E +   +                        ++       L +     H     +  
Sbjct: 547 PEFEAWRDGEGAECRWTH-----KYYKGLGTSTPMEAREYFTALDRHLKKFHALQGQDSN 601

Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676
            I   F+ +   E             +   E +E      IN   IL            V
Sbjct: 602 YIDLAFSKKKADER-KEWLQGFIPGTHLDPEINEIPISDFINKELILFSMSDNIRSIPSV 660

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
           L+G         Y  I      E  +  L+   + +     G  SL+ TI  + +
Sbjct: 661 LDGLKPGQRKVLYGCIKKKLKSEIKVAQLAGYVSENTGYHHGEQSLVQTIIGLAQ 715


>gi|188037370|gb|ACD46303.1| DNA gyrase subunit B [Providencia sneebia]
 gi|188037381|gb|ACD46308.1| DNA gyrase subunit B [Providencia sneebia]
 gi|188037392|gb|ACD46313.1| DNA gyrase subunit B [Providencia sneebia]
          Length = 270

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 156/273 (57%), Positives = 200/273 (73%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+GN++
Sbjct: 1   IHEEEGVSAAEVIMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGNVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSS 205
           E  + +G    PL V G   + TGT V F PS + F  V +F Y+ L  RLRELSFLNS 
Sbjct: 61  EQIYRHGEPQGPLTVVGET-DQTGTRVRFWPSLETFKGVTEFEYEILAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I LIDKR+ +       Y+GGI+AFV YL R+K P+  S       +D I +++AM+W
Sbjct: 120 VSIKLIDKRNGKE--DHFHYEGGIKAFVEYLSRNKNPIHPSVFYFSTEKDGIGVEIAMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV C+TNNIPQ+DGGTHL+G R+A+TR + +Y++K    KK K S  GDD REG
Sbjct: 178 NDGFQENVYCYTNNIPQRDGGTHLAGFRAAMTRTLNNYMDKEGYQKKSKVSATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|324962636|gb|ADY62420.1| gyrase subunit B [Frankia sp. BMG5.23]
          Length = 360

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 156/359 (43%), Positives = 212/359 (59%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVTDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I  +G+++   ++    D PL  TG+      + VTF     IF   +
Sbjct: 61  VVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTGTS-VTFWADPTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y+TL  RL+E++FLN  + I+L+D+R  E   +T  Y  G+  FV +L+  K  + +S
Sbjct: 120 YKYETLSRRLQEMAFLNKGLSITLVDERDEERVAVTYKYANGLVDFVGHLNATKDTIHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I  +LAM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLESKGVGIEAELAMQWNGGYTESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD RE  T+++S+K+  P+F  QTK KL ++E +  V+  
Sbjct: 240 QNLLKPVKAGAKNSDERLSGDDIREDLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARAIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|118201806|gb|ABK79716.1| DNA gyrase subunit b [Ruegeria atlantica]
          Length = 357

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 214/357 (59%), Positives = 270/357 (75%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+WL+LR+ R G  +   F  G     L V    G+ TGTEV FL S D FS  +++
Sbjct: 1   NALSNWLELRVWRNGKEHVARFEGGETVEHLKVVAECGDRTGTEVRFLASLDTFSNLEYS 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I LID+R  E  E  +FY+GG++ FV YLDR K   M  PI
Sbjct: 61  FETLEKRLRELAFLNSGVRIILIDERPAERLETELFYEGGVKEFVKYLDRSKTSAMPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 121 YIKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHIAGFRGALTRTINNYAQTSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  +N+ L+ W 
Sbjct: 181 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLMNEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AKIIV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPNVAKIIVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSEKDPTKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+MLSSQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLSSQEIGNLVMALGTGI 357


>gi|211927111|dbj|BAG82808.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 428

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 170/429 (39%), Positives = 246/429 (57%), Gaps = 38/429 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF----INGILDNPLVVTGSAG 166
             +Y VSGGLHGVG+SVVNALSS +++ I  +G  ++ +F             ++ G   
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKVEVEIDVDGYHWQQNFHWDEKKRDSVAEELIKGEPT 60

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------- 216
             TGT V F     +F+    ++++T+  RL+E++FLN  + I+L D+R           
Sbjct: 61  TRTGTTVRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAVEVPDEAI 120

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGS 253
                                + RE    Y  G+  +V +++    K P+  S I  +G 
Sbjct: 121 TEEAPSAHEDDVAAALAEVAPKKRERIFHYPDGLVDYVKHINARTSKTPIHNSIISFEGK 180

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y +     K+ 
Sbjct: 181 EKGHEVEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLVKEK 240

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              + GDD REG  +V+S+K+ +P+F  QTK KL +SE++  V+    + L  W + +P 
Sbjct: 241 DGDLSGDDIREGLAAVISVKVAEPQFEGQTKTKLGNSEIKGFVQKVCREQLQFWFDSNPA 300

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AK IV+K   ++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGD
Sbjct: 301 DAKTIVQKAAASAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIVEGD 360

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAK GR    QAILP+RGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI 
Sbjct: 361 SAGGSAKSGRDSMYQAILPIRGKIINVEKARIDKVLKNTEVQSIITAFGTGI-HDEFDIA 419

Query: 494 KLRYHKIII 502
           KLRY KI++
Sbjct: 420 KLRYKKIVL 428


>gi|62085696|gb|AAX63240.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 426

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 182/429 (42%), Positives = 253/429 (58%), Gaps = 39/429 (9%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++        L   G
Sbjct: 1   HAGGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGFNWEQTYTYATP-GALEK-G 58

Query: 164 SAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS------- 215
           +    TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R        
Sbjct: 59  TPTRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEPPG 118

Query: 216 ---------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
                                       +P+  T  Y  G+  ++ +L+R K+ +  + +
Sbjct: 119 DADGDEESGTTEAAEAVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVV 178

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
              G      +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y     
Sbjct: 179 GFTGQGTGHEVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTLTVNKYAVDKK 238

Query: 309 GSKKDKRS-VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             K  K   + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   ++ L  W
Sbjct: 239 LIKDKKEDRLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRVCSEHLGHW 298

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LE +P EAK I+KK++++   R AAR ARDL RRK   DI  LPGKLADC   DP K E+
Sbjct: 299 LEANPAEAKTIIKKIVESQRARMAARNARDLVRRKTATDIGGLPGKLADCRSNDPSKCEV 358

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  
Sbjct: 359 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-H 417

Query: 488 DSFDINKLR 496
           D FDI+KLR
Sbjct: 418 DEFDISKLR 426


>gi|294963296|gb|ADF50135.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 364

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 167/363 (46%), Positives = 250/363 (68%), Gaps = 3/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L++ + REG I+   +  GI    L V G     TGT   F P  +IF     
Sbjct: 1   VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTE-QTGTITRFKPDPEIFQETIV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEE 118

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K
Sbjct: 119 PVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    
Sbjct: 179 NNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEK 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE
Sbjct: 239 FLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISE 298

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT +G
Sbjct: 299 IYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNMG 358

Query: 487 QDS 489
            D 
Sbjct: 359 GDF 361


>gi|317420216|emb|CBW30265.1| gyrase subunit B [Psychrobacter fozii]
          Length = 377

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 212/371 (57%), Positives = 273/371 (73%), Gaps = 3/371 (0%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L++ I REG  Y  ++ +G+ D  +     A N TGT++ F PSSD+F+   
Sbjct: 10  VVNALSKKLEMNIWREGYHYNQTYTDGVPDADIQQ-MEATNQTGTQIRFYPSSDVFTGTI 68

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F YD L  RLRELSFLNS V+I L D+R  +  E    +KGG+  FVSY++  K  + + 
Sbjct: 69  FEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLLEFVSYINAGKDGVNEV 126

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                   D IS+++A++W D Y+E VLCFTNNIPQKDGGTHLSG RSALTR + SY+++
Sbjct: 127 FHFTSQQDDGISVEVALQWTDTYNEKVLCFTNNIPQKDGGTHLSGFRSALTRCLNSYMDR 186

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D  + 
Sbjct: 187 ENLFKKEKVAATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFND 246

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P   K I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SE
Sbjct: 247 YLLENPSAGKAIASKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSE 306

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG
Sbjct: 307 LYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIG 366

Query: 487 QDSFDINKLRY 497
            D ++ +K+RY
Sbjct: 367 PDEYNPDKVRY 377


>gi|294963334|gb|ADF50154.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 355

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 170/356 (47%), Positives = 244/356 (68%), Gaps = 2/356 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FN 188
           ALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    F+
Sbjct: 1   ALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFD 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+
Sbjct: 60  YDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPV 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+ 
Sbjct: 120 YIEGEKDGITIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +L
Sbjct: 180 VFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFL 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL+
Sbjct: 240 LENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELY 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 300 IVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 355


>gi|10281024|dbj|BAB13753.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 141/662 (21%), Positives = 240/662 (36%), Gaps = 37/662 (5%)

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D  +       I V ++ +     V ++G+GIP ++H +E +   E
Sbjct: 14  GLYKIFDEILVNAADNKIRDPSMKNIKVRIDPENNVIQVFNDGKGIPVEMHTKEKMYIPE 73

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL 155
           +I   L     ++    KV+GG +G G  + N  S+  ++       G +Y+ ++ + + 
Sbjct: 74  LIFGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQTWTDNMT 133

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLI 211
                 +         T++TF P    F +   + D    L+ R+ +L     +  I L 
Sbjct: 134 KVGKPKINALKTKKEYTKITFKPDLSKFDMDSLDEDLLSVLRRRVYDLCGTVKNCNIYLN 193

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           DKR P     +              +   +   ++   I     N   ++A   +DG   
Sbjct: 194 DKRLPVTSFKSYVEMYVKAIKERSPEPEGEGAPKNYTTIVHEVFNERWEVAFAVSDGSFN 253

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N+I    GGTH+  +   +  ++   + K     K K  +  ++ R+     ++
Sbjct: 254 QV-SFVNSIATTAGGTHVKYVSDQIITKLVETLSK-KEKGKKKLMIKPNEVRDNMFIFIN 311

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI--IVKKVLDASMVR 389
             + +P F+SQTKE+L +      V  F         +          I  K+ D +   
Sbjct: 312 CLIENPAFTSQTKEQLTTK-----VSQFGGKEKFVASDNLISRVLKTGIADKIRDIANAN 366

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRS 444
           +     +    RK  +              RD  K  L L EG SA      G    GR 
Sbjct: 367 EDKALQKVDGSRKSRIKGQVNLVDANKAGTRDGLKCTLILTEGLSALNLAVAGLTVIGRD 426

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIII 502
                  PLRGK+LNV  A  D++  + EI +L   +G    +     +I  LRY  I I
Sbjct: 427 --YYGCFPLRGKLLNVREASADQIAKNAEINSLKQIIGLQHKKTYNAENIKSLRYGHIPI 484

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRG----KSLQYVKDEE 557
           MTD D DG+HI+ L++ F     P L+   GFL     P+  +T      K +       
Sbjct: 485 MTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKGRGAKKIIPFYSMP 544

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
             E +        E +    ++           ++       L +     H     + + 
Sbjct: 545 EFETWR-----DGEGQTCRWTQKYYKGLGTSTPMEAREYFTALDRHLKRFHALQGEDSSC 599

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
           I   F+ +   E                   +E      IN   IL            VL
Sbjct: 600 IDLAFSKKKADER-KEWLQNFVPGNQLDPALNEIPISEFINKELILFSMSDNIRSIPSVL 658

Query: 678 EG 679
           +G
Sbjct: 659 DG 660


>gi|308152541|dbj|BAJ22249.1| DNA gyrase subunit B [Gordonia hydrophobica]
          Length = 419

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 180/422 (42%), Positives = 253/422 (59%), Gaps = 33/422 (7%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L IKR G  +  ++ +     PL   G+  ++TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVQLDIKRNGANWSQTYTHAEP-GPLEE-GAPTDETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
           T V+F    +IF   +FN +T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TTVSFWADPNIFETTEFNIETIARRLQEMAFLNKGLTITLTDERIHEAVLEAEAEETEDG 118

Query: 217 ---------------EPREITMFYKGGIEAFVSYLDRHKK-PLMQSPIRIQGSRDNISID 260
                          + +     Y  G+  ++ +L+   K P+ +S I I        ++
Sbjct: 119 DASIKTEEQKADAVAKVKTRVYHYPDGLVDYIKHLNNRTKAPIHKSVIGITAKGTGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN+G+ E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + GD
Sbjct: 179 IAMQWNEGFAESVHTFANTINTAEGGTHEEGFRAALTSTVNKYAFDKKLIKEKDGKLSGD 238

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W + +P EAK I++
Sbjct: 239 DIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLALWFDANPAEAKTIIR 298

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K  D+   R AARRARDL RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK
Sbjct: 299 KAADSQQARLAARRARDLVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAK 358

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
            GR    QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI
Sbjct: 359 SGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKI 417

Query: 501 II 502
           ++
Sbjct: 418 VL 419


>gi|161339230|gb|ABX64366.1| GyrB [Gordonia sp. CC-273-7]
          Length = 415

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 173/415 (41%), Positives = 243/415 (58%), Gaps = 38/415 (9%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  +Y VSGGLHGVG+SVVNALS+ ++L I  +G  +E ++       PL   G A 
Sbjct: 1   GKFDSDAYAVSGGLHGVGISVVNALSTKVELEIANDGFNWEQTYSYAKP-GPLEK-GDAT 58

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS---------- 215
             TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R           
Sbjct: 59  RKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 216 -------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 GDDEAAPTTEVAETVKTETEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 NAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S+K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI 413


>gi|270017268|gb|ACZ58151.1| DNA gyrase subunit B [Gordonia sp. CC-NAPH129-6]
          Length = 426

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 182/429 (42%), Positives = 253/429 (58%), Gaps = 39/429 (9%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++        L   G
Sbjct: 1   HAGGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGFNWEQTYTYATP-GALEK-G 58

Query: 164 SAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS------- 215
           +    TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R        
Sbjct: 59  TPTRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEPPG 118

Query: 216 ---------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
                                       +P+  T  Y  G+  ++ +L+R K+ +  + +
Sbjct: 119 DADGDEESGTTEAAEVVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVV 178

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
              G      +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y     
Sbjct: 179 GFTGQGTGHEVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTLTVNKYAVDKK 238

Query: 309 GSKKDKRS-VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             K  K   + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   ++ L  W
Sbjct: 239 LIKDKKEDRLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRVCSEHLGHW 298

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           LE +P EAK I+KK++++   R AAR ARDL RRK   DI  LPGKLADC   DP K E+
Sbjct: 299 LEANPAEAKTIIKKIVESQRARMAARNARDLVRRKTATDIGGLPGKLADCRSNDPSKCEV 358

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ++VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  
Sbjct: 359 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-H 417

Query: 488 DSFDINKLR 496
           D FDI+KLR
Sbjct: 418 DEFDISKLR 426


>gi|297243590|ref|ZP_06927521.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis AMD]
 gi|296888341|gb|EFH27082.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis AMD]
          Length = 793

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 103/268 (38%), Positives = 150/268 (55%), Gaps = 27/268 (10%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               YDADS+ +L+GLDAV+KRP MYIG TD + GL H ++E++DNA+DE+L G  D I 
Sbjct: 4   HKEQYDADSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNAVDEALAGACDHII 62

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  +GGLHGVG 
Sbjct: 63  VTLHDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGS 122

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLVV 161
           SVVNALS  L + + R+G  + M+F  G                             L +
Sbjct: 123 SVVNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKPTELEI 182

Query: 162 TGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            G+ +   TGT V +    +IF+    F+Y+ L  R+R+ SFL   ++I++ID+  PE  
Sbjct: 183 IGTVSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDEHVPEGE 242

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSP 247
              +      E  V   +  +  L+++ 
Sbjct: 243 SANIEEIDSPEDNVIEDNAAEDNLLENQ 270



 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 133/436 (30%), Positives = 209/436 (47%), Gaps = 35/436 (8%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-------------- 258
           +    PR +   + GG++ FV +L +     +    RI G    +               
Sbjct: 328 QNKHHPRVVEFLHNGGVKDFVDFLSKG--EAVSDIWRISGEDTYVEETQAVDSAGDLHAQ 385

Query: 259 -------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF--- 308
                  +D+AMRW +GY   ++ F N +    GG H+ G    LT+QI   VE +    
Sbjct: 386 QVTRKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKL 445

Query: 309 --GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K     +  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 446 KVNLKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGE 505

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   + 
Sbjct: 506 MITGSKRGFKEQSARVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGND 565

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 566 DVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVG 625

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G   FDI++ RY+KI++MTDADVDGAHIR LLLT F+R M  LI +G +Y   PPL+
Sbjct: 626 AGSGAS-FDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLH 684

Query: 543 GITR--GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            I     +  +Y+      E       L  +   F             +    A      
Sbjct: 685 RIALAGKRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDP 744

Query: 601 IKDFYPNHDKTFIEQA 616
                        +QA
Sbjct: 745 RTRMLRRIRMEDAQQA 760



 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLL 763
              G+ I       L   +  +  KGI     +QRYKGLGEM+A QL +TT++P TR L 
Sbjct: 691 KRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRMLR 750

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+++ DA QA ++F  LMGD+V PR++FI +N+
Sbjct: 751 RIRMEDAQQASEVFDLLMGDDVPPRKQFIVDNA 783


>gi|294963314|gb|ADF50144.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 355

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 170/356 (47%), Positives = 244/356 (68%), Gaps = 2/356 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FN 188
           ALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    F+
Sbjct: 1   ALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFD 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+
Sbjct: 60  YDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPV 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+ 
Sbjct: 120 YIEGEKDGITIEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +L
Sbjct: 180 VFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFL 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL+
Sbjct: 240 LENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELY 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 300 IVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 355


>gi|283783166|ref|YP_003373920.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
           vaginalis 409-05]
 gi|283441259|gb|ADB13725.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
           vaginalis 409-05]
          Length = 792

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 101/254 (39%), Positives = 144/254 (56%), Gaps = 27/254 (10%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               YDADS+ +L+GLDAV+KRP MYIG TD + GL H ++E++DNA+DE+L G  D I 
Sbjct: 4   HKEQYDADSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNAVDEALAGACDHII 62

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  +GGLHGVG 
Sbjct: 63  VTLHDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGS 122

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLVV 161
           SVVNALS  L + + R+G  + M+F  G                             L +
Sbjct: 123 SVVNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKSTELEI 182

Query: 162 TGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            G+ +   TGT V +    +IF+    F+Y+ L  R+R+ SFL   ++I++ID+  PE  
Sbjct: 183 IGTVSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDEHVPEGE 242

Query: 220 EITMFYKGGIEAFV 233
              +      +  V
Sbjct: 243 SANIEEIDSTKDDV 256



 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 133/436 (30%), Positives = 209/436 (47%), Gaps = 35/436 (8%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-------------- 258
           +    PR +   + GG++ FV +L +     +    RI G    +               
Sbjct: 327 QNKHHPRVVEFLHNGGVKDFVDFLSKG--EAVSDIWRISGEDTYVEETQAVDSAGDLHAQ 384

Query: 259 -------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF--- 308
                  +D+AMRW +GY   ++ F N +    GG H+ G    LT+QI   VE +    
Sbjct: 385 QVTRKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKL 444

Query: 309 --GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K     +  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 445 KVNLKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGE 504

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   + 
Sbjct: 505 MITGSKRGFKEQSSRVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGND 564

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 565 DVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVG 624

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G   FDI++ RY+KI++MTDADVDGAHIR LLLT F+R M  LI +G +Y   PPL+
Sbjct: 625 AGSGAS-FDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLH 683

Query: 543 GITR--GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            I     +  +Y+      E       L  +   F             +    A      
Sbjct: 684 RIALAGKRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDP 743

Query: 601 IKDFYPNHDKTFIEQA 616
                        +QA
Sbjct: 744 RTRMLRRIRMEDAQQA 759



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLL 763
              G+ I       L   +  +  KGI     +QRYKGLGEM+A QL +TT++P TR L 
Sbjct: 690 KRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRMLR 749

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+++ DA QA ++F  LMGD+V PR++FI +N+
Sbjct: 750 RIRMEDAQQASEVFDLLMGDDVPPRKQFIVDNA 782


>gi|118201760|gb|ABK79693.1| DNA gyrase subunit b [Jannaschia rubra]
          Length = 356

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 218/357 (61%), Positives = 277/357 (77%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R+G  +   F +G     L V G   + TGTEV F+ S + FS +D++
Sbjct: 1   NALSDWLELRIWRDGKEHVARFEHGDTVEHLKVVGDT-DRTGTEVRFMASLNTFSNRDYS 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           + TL++RLREL+FLNS V+I L D+R  E     +FY+GG+  FV Y+DR K  +M  PI
Sbjct: 60  FKTLENRLRELAFLNSGVRIVLEDERPVEALRTELFYEGGVREFVRYIDRSKTAVMPDPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            ++G RD I +++AM WND Y+E VL FTNNIPQ+DGGTHL+GLR ALTR I  Y + S 
Sbjct: 120 YMEGERDGIGVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHLAGLRGALTRTINLYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            ++K+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ VN+ L+ W 
Sbjct: 180 IARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVNEKLAEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P +A+ IV K+++A+  R+AAR+AR+LTRRK  +D+ASLPGKLADC E+DP K+ELF
Sbjct: 240 EENPQQARQIVGKIIEAAFAREAARKARELTRRKTAMDVASLPGKLADCQEKDPSKAELF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSAKQGRSR+NQAILPL+GKILNVERARFD+ML+SQEIGTLITA+GTGI
Sbjct: 300 LVEGDSAGGSAKQGRSRQNQAILPLKGKILNVERARFDRMLASQEIGTLITAMGTGI 356


>gi|183601375|ref|ZP_02962745.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683430|ref|YP_002469813.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191126|ref|YP_002968520.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196532|ref|YP_002970087.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218981|gb|EDT89622.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621080|gb|ACL29237.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249518|gb|ACS46458.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251086|gb|ACS48025.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289178872|gb|ADC86118.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794115|gb|ADG33650.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis V9]
          Length = 779

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 141/243 (58%), Gaps = 28/243 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   +  SY A S+ +L+GLDAV+KRP MYIG TD + GL H ++E++DN++DE+L G 
Sbjct: 1   MAKK-EPGSYGAGSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNSVDEALAGA 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  +GGL
Sbjct: 59  CTHIVVTLHEDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYNAAGGL 118

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------D 156
           HGVG SVVNALSS + + + R G+ Y M+F  G                           
Sbjct: 119 HGVGSSVVNALSSRMDVEVDRNGHTYHMAFHQGHPGVYTDEDPQRPSPDSPFKKTRKNRP 178

Query: 157 NPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             L + G      TGT + +    +IF+    F+Y+ L  R+R+ SFL   ++I++ID+R
Sbjct: 179 TELEIIGKVPPKRTGTRIRYWADPEIFNDTAKFDYEQLIDRVRQTSFLVPGLKITVIDER 238

Query: 215 SPE 217
             E
Sbjct: 239 IRE 241



 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 132/432 (30%), Positives = 201/432 (46%), Gaps = 31/432 (7%)

Query: 215 SPEPREITMFYKGGIEAFVS-----------YLDRHKKPLMQSPI--------RIQGSRD 255
               R     + GGI  FV            +    +    +             Q    
Sbjct: 316 PGHRRVEEFCHTGGIVDFVDFLSHGEAVSTVWRISGQGTYHEETQAVDANGDLHAQKIVR 375

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-----GS 310
              +D+AMRW +GY   +  F N +    GG H+ G    +T+QI   VE +        
Sbjct: 376 TCDVDIAMRWTNGYDTVLKSFVNVVATPGGGMHVDGFLQGITKQIRKTVEDNARKLKVNL 435

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K  K  +  DD   G  +V+++++ +P+F  QTK+ L ++ V+ +V    +   +  +  
Sbjct: 436 KDPKMKIERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAPVKPLVTRITDKQFAELITG 495

Query: 371 HPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
                K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   +   +E
Sbjct: 496 AKRGYKEQSARVLEKIVGEMHARIQARKTKEVTRRKNALESASMPSKLSDCQPGNDDIAE 555

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E  ++I  +G G G
Sbjct: 556 LFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLSQMLSNKECASIIQVIGAGSG 615

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
              FDI   RY+KI++MTDADVDGAHIRTLLLT F+R M  L+  G +Y   PPL+ I  
Sbjct: 616 AS-FDIESARYNKIVMMTDADVDGAHIRTLLLTLFYRYMRPLVEAGHVYAAVPPLHRIAL 674

Query: 547 --GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
              +  +Y+      E       L  E   + D           +    A          
Sbjct: 675 AGARKGEYIYTYSDDELAGRLAQLDAEHIPYADDIQRYKGLGEMDANQLADTTMDPRTRL 734

Query: 605 YPNHDKTFIEQA 616
                    EQA
Sbjct: 735 LRRIRMEDAEQA 746



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 52/61 (85%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+A+QL +TT++P TR L R+++ DA QA+D+FS LMGDEV PRR+FI +N
Sbjct: 709 IQRYKGLGEMDANQLADTTMDPRTRLLRRIRMEDAEQANDIFSLLMGDEVPPRRQFIVDN 768

Query: 796 S 796
           +
Sbjct: 769 A 769


>gi|68069037|ref|XP_676429.1| DNA topoisomerase II [Plasmodium berghei strain ANKA]
 gi|56496123|emb|CAH96271.1| DNA topoisomerase II, putative [Plasmodium berghei]
          Length = 1092

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 134/692 (19%), Positives = 251/692 (36%), Gaps = 104/692 (15%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS N        +  Q    ++ +  RP  YIG  +  +                     
Sbjct: 1   MSKNKTI----EERYQKKSQIEHILLRPDTYIGSVEMHTQLLWIWNKEKNRMVQKNITYV 56

Query: 40  -GLHHMIYEVLDNAID------ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEE 91
            GL+ +  E++ NA D      E  E     I + +N +    +V ++G GIP D+HKE 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKEQKRISVYNDGEGIPVDIHKEM 116

Query: 92  GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI---KREGNIYEM 148
            I    +I   L     ++    +++GG +G G  + N  S    ++     R    ++M
Sbjct: 117 NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFTVQCGDSSR-KREFKM 175

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++   +         +       +VTF P  D F + + + D    L  R+ +L+   + 
Sbjct: 176 TWSQNMSKFSEPHIKNYNGKDYVKVTFKPDLDKFGMAELDDDIECLLHKRVYDLAGTCN- 234

Query: 206 VQISLI------------------------------------------DKRSPEPREITM 223
           V++ L                                           +K          
Sbjct: 235 VRVYLNGTRLPVKDFKSYVDLYLRDNSHPNTNPSVSKNALNGNTDASVNKTIDNLDVSIF 294

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-------IDLAMRWNDGYHENVLCF 276
              GG    ++     ++    +    +   + +         ++ +   DG     + F
Sbjct: 295 HDNGGGAGDITPSKTTEENGNSNFNNNKYEEEIVKIHEKQHRWEIVISKTDGSQFQQVSF 354

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N+I    GGTH+S +   L   + S  +K+    K    +     R      ++  + +
Sbjct: 355 VNSICTTKGGTHVSYIVDQL---LNSLSKKANAKNKGGMEIKSGHIRNHLWVFVNCLIVN 411

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P F SQTKE L + + +   +  + D     + +  + +  I+      + V    +   
Sbjct: 412 PTFDSQTKETLTTKQSKFGSKCILTDKTINNVLKSSILSN-ILLWAQAKAQVELRKKMKA 470

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAIL 451
             ++ +  +          D   +  ++  L L EGDSA      G +  GR R    + 
Sbjct: 471 GSSKARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDR--YGVF 528

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGI-GQDSFDINKLRYHKIIIMTDADVDG 510
           PL+GK+LNV  A F +++ ++EI  +   +G  I  ++  DI  LRY  ++I TD D DG
Sbjct: 529 PLKGKLLNVRDASFKQLMDNKEIQNIFKIMGLDITDKNKQDIKGLRYGSLMI-TDQDYDG 587

Query: 511 AHIRTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           +HI+ LL+    +  PSL+ H GFL     P+  + +G            E +  N +L 
Sbjct: 588 SHIKGLLINMIHKFWPSLLKHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWKENTNLV 647

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
                +    G  +  + + +  D      + 
Sbjct: 648 GWKIKYYKGLGTSTDKEFKQYFSDIQSHKIVF 679


>gi|295979519|dbj|BAJ07432.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979521|dbj|BAJ07433.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979545|dbj|BAJ07445.1| DNA gyrase subunit B [Planktothrix agardhii]
          Length = 352

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 157/352 (44%), Positives = 222/352 (63%), Gaps = 7/352 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I +  N DGS TV+D+GRGIP D H + G SA E ++T LHAGGKF    YKVS
Sbjct: 1   AGYCTHIEIDFNPDGSVTVTDDGRGIPVDTHSKTGKSALETVLTVLHAGGKFGGGGYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS W+++ + R+   Y   +  G     L         TGT V FLP
Sbjct: 61  GGLHGVGVSVVNALSEWVEVTVYRDKKQYRQRYERGTPATELTSKSIKETRTGTSVCFLP 120

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----EPREITMFYKGGIEA 231
            + IF+   +F+YDT+  RLREL++LN+ V+I+L D R        PR  T  Y+GGI  
Sbjct: 121 DTLIFTTGIEFDYDTIASRLRELAYLNAGVKITLSDNRLELLKRDTPRVETYCYEGGIRE 180

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +++Y++  K+PL +  I + G R+N+ I++A++W  D Y + +L F NNI   DGGTHL 
Sbjct: 181 YIAYMNNDKQPLHEDIIYVFGERNNVQIEVALQWCTDAYSDTILGFANNIRTVDGGTHLE 240

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GL++ LTR + +   K    K+   ++ G++ REG T+V+S+K+PDP F  QTK KL ++
Sbjct: 241 GLKTVLTRTLNAIARKRNKLKEGDANLGGENIREGLTAVISVKVPDPEFEGQTKTKLGNT 300

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           EVR +V+S V + L+ +LE +P  A  +++K + A    +AARRARDL RRK
Sbjct: 301 EVRGIVDSLVGETLTEYLEFNPGIADSVIEKAIQAFKAAEAARRARDLVRRK 352


>gi|262480374|gb|ACY68960.1| DNA gyrase subunit B [Micromonospora sp. 211018]
          Length = 373

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 169/375 (45%), Positives = 242/375 (64%), Gaps = 8/375 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
            SGGLHGVGVSVVNALS+ +++ I + G ++   + N     PL   G   N TG+ V F
Sbjct: 1   FSGGLHGVGVSVVNALSTRMEVEIHKSGFVWRQQYTNSKP-TPLEK-GETTNRTGSAVAF 58

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIE 230
            P  ++F   DF++ T+  RL+E++FLN  + I L+D+R       +PRE+T  YKGGI 
Sbjct: 59  WPDPNVFETVDFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEGEEGKPREVTFLYKGGIA 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +GGTH  
Sbjct: 119 DFVRHLNASKNPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEE 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++
Sbjct: 179 GFRAALTSVVNRYGTDRK-LLKSDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNT 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            V+S V+   N+ L  W + +P EAK I++K   A+  R AA++AR L RRK +L+  S+
Sbjct: 238 PVKSFVQRVCNEWLVDWFDRNPGEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSM 297

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L 
Sbjct: 298 PGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 357

Query: 471 SQEIGTLITALGTGI 485
           + E+  LITALGTGI
Sbjct: 358 NNEVQALITALGTGI 372


>gi|319958720|gb|ADV90530.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 365

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 175/367 (47%), Positives = 255/367 (69%), Gaps = 3/367 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+  ++  G+    L V G   + TGT   F+P  +IF     ++Y
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTVYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L +R+REL+FL   V I++ DKR  + R+    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I++++A+++ND Y  N+  FTNNI   +GGTH +G ++ LTR I  Y  +   
Sbjct: 120 IEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGI 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  +  L  +L 
Sbjct: 180 FKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  A+ IV+K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLR 496
           F++ K R
Sbjct: 359 FNLEKAR 365


>gi|295979523|dbj|BAJ07434.1| DNA gyrase subunit B [Oscillatoria mougeotii]
 gi|295979525|dbj|BAJ07435.1| DNA gyrase subunit B [Oscillatoria mougeotii]
          Length = 352

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 155/352 (44%), Positives = 219/352 (62%), Gaps = 7/352 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I +  N DGS TV+D+GRGIP D H + G SA E ++T LHAGGKF    YKVS
Sbjct: 1   AGYCTHIEIDFNADGSVTVTDDGRGIPVDTHSKTGKSALETVLTVLHAGGKFGGGGYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS W+++ + R+   Y   F  G     L       N TGT + F P
Sbjct: 61  GGLHGVGVSVVNALSEWVEVTVFRDKKEYRQRFERGTPVTELTSKPIKENRTGTSLRFFP 120

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEA 231
            + IF+   +F+ DT+  RLREL++LN+ V+++L D R        PR  T  Y+GGI  
Sbjct: 121 DTVIFTSGIEFDCDTIASRLRELAYLNAGVKVTLTDNRLELLKRETPRIETYCYEGGIRE 180

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +++Y++  K+PL +  I I G R N+ I++A++W  D Y + +L F NNI   DGGTHL 
Sbjct: 181 YIAYMNNDKQPLHEDIIYISGERSNVQIEVALQWCTDAYSDTILGFANNIRTIDGGTHLE 240

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GL++ LTR + +   K    K+ + ++ G++ REG T+V+S K+PDP F  QTK +L + 
Sbjct: 241 GLKTVLTRTLNTIARKRNKLKEGEANLGGENIREGLTAVISAKVPDPEFEGQTKTRLGNP 300

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           EVR +V+S V + L+ +LE +P  A  +++K + A    +AARRARDL RRK
Sbjct: 301 EVRGIVDSLVGEALTEYLEFNPGIADAVIEKAIQAFKAAEAARRARDLVRRK 352


>gi|13487323|gb|AAK27494.1|AF343331_1 DNA gyrase B [Cycloclasticus sp. W]
          Length = 362

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 206/365 (56%), Positives = 271/365 (74%), Gaps = 3/365 (0%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           EG+ +   +  G    PL V G     TGT + F PS   FS  +F++D L  RLRELSF
Sbjct: 1   EGSQHYQLYKKGEPVEPLKVVGPTE-KTGTSLRFKPSIGTFSNIEFHFDLLAKRLRELSF 59

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           LNS V+I L D+R+ +       Y+GGI+AFV++L+++K  + ++ I I   ++++++++
Sbjct: 60  LNSGVRIRLSDERTAKE--EIFEYEGGIKAFVNHLNKNKSQIHENIIYINVDKNDVNVEV 117

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A++WND Y EN+ C+TNNIPQ+DGGTHL+G R+ LTR +  Y+E S  +KK K +  GDD
Sbjct: 118 ALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRAGLTRTLNQYIEGSGLAKKQKVTTSGDD 177

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T+VLS+K+PDP+FSS TK+KLVSSEV+S+VES + + L  +L E+P EAK I  K
Sbjct: 178 AREGLTAVLSVKVPDPKFSSLTKDKLVSSEVKSIVESSLAEALQEFLLENPTEAKEIAGK 237

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           +L+A+  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SE+FLVEGDSAGGSAKQ
Sbjct: 238 MLEAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSEIFLVEGDSAGGSAKQ 297

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR R  QAILPL+GKILNVE+ARFDK LSS E+GTLITALG GIG++ +    LRYHKII
Sbjct: 298 GRDRRTQAILPLKGKILNVEKARFDKTLSSDEVGTLITALGCGIGKEEYKPENLRYHKII 357

Query: 502 IMTDA 506
           IMTDA
Sbjct: 358 IMTDA 362


>gi|319958732|gb|ADV90536.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 363

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 173/365 (47%), Positives = 249/365 (68%), Gaps = 3/365 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYD 190
           S+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    F+YD
Sbjct: 1   STTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFDYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
           TL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+ I
Sbjct: 60  TLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVYI 119

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
           +G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+   
Sbjct: 120 EGEKDGITIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGVF 179

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +L E
Sbjct: 180 KDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLLE 239

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL++V
Sbjct: 240 NPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYIV 299

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D F
Sbjct: 300 EGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED-F 358

Query: 491 DINKL 495
            + K 
Sbjct: 359 TLEKA 363


>gi|145496633|ref|XP_001434307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401431|emb|CAK66910.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1220

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 134/677 (19%), Positives = 255/677 (37%), Gaps = 52/677 (7%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLH--------------------HMIYEVLDNAIDESL 57
           +  ++ +  RP  YIG     + L                      +  ++L NA D   
Sbjct: 1   MSHIEHILNRPDTYIGSVQKMNELMWIVKNGKMIQKEIEYVPAFFKIFDDILVNAADNIQ 60

Query: 58  EGY----ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
                     + V +      +V ++G+ IP ++HKE  +   E+I      G  F+   
Sbjct: 61  RNNQTYKMSSLRVEIG--NQISVKNDGQPIPVEIHKEYQLYVPELIFGVSLTGSNFDDTE 118

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY-EMSFINGILDNPLVVTGSAGNDTGTE 172
            +V GG +G G  + N  SS   + +  +G+ Y +  + N + +  + +      D   +
Sbjct: 119 KRVVGGRNGYGAKLTNVYSSEFSVEVC-DGSNYLKQVWSNNMSNKQIPIIKQMKKDPFVQ 177

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           +T+ P    F + +   DT    +R +  +       +    + E   I        + +
Sbjct: 178 ITYKPDFKRFGMNEIEEDTQALLVRRVYDMAGIYGNRINVYLNDEKIPI-----NSFQKY 232

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V          +               ++ + ++    ++V  F N+I    GGTH++ +
Sbjct: 233 VDLYLPSNSIKIYD-----KEMTTPRWEVVVSYSATQFQHV-SFVNSIFTSKGGTHVTHV 286

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
              L ++I + ++ +   K  +  V     ++     ++  + +P F SQTKE L +   
Sbjct: 287 TDKLIQEIQNEMKSNKKYKHLE--VQKYQIKQSLWIFVNCLINNPTFDSQTKENLTTRVT 344

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
                      ++    +  ++  II      A    DA    +    +   L       
Sbjct: 345 DFGGTDEEKFKVTEKFSKALIKTDIIETIFQQAKAKADAKLNKQLKGTKTSKLHGIEKLD 404

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKML 469
              D  +++ +   L L EGDSA   A  G     R+   + PL+GK+LNV  A   +++
Sbjct: 405 DANDAGKKNSEFCTLILTEGDSAKALAMAGIDIVGRDRYGVFPLKGKLLNVREASVKQIM 464

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            ++EI  LI  +G    ++  D+  LRY  ++IMTD D+DG+HI+ L++ F     PSL+
Sbjct: 465 DNEEIQNLIKIIGLQKDREYGDLKSLRYGSVMIMTDQDIDGSHIKGLIINFIHHFWPSLL 524

Query: 530 -HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
            + GFL     PL   T+G         +    +   Q +      +    G  + +DL 
Sbjct: 525 KYKGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQIQDIKSWKIKYYKGLG--TSDDLE 582

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
                   I   I+     +D    +Q++    FN +   +    LA    + L     +
Sbjct: 583 AQEYFRNLISHTIQF---RYDNEEDDQSIDL-CFNKKKANDRKQWLAQYNHD-LYVDHTQ 637

Query: 649 SEKSWHGSINNSDILVK 665
            E  +   I+   I   
Sbjct: 638 KELGYQDFIHKELIHFS 654


>gi|319958740|gb|ADV90540.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 363

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 173/365 (47%), Positives = 249/365 (68%), Gaps = 3/365 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYD 190
           S+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    F+YD
Sbjct: 1   STTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFDYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
           TL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+ I
Sbjct: 60  TLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVYI 119

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
           +G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+   
Sbjct: 120 EGEKDGITIEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGVF 179

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +L E
Sbjct: 180 KDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLLE 239

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL++V
Sbjct: 240 NPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYIV 299

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D F
Sbjct: 300 EGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED-F 358

Query: 491 DINKL 495
            + K 
Sbjct: 359 TLEKA 363


>gi|13487307|gb|AAK27486.1|AF343323_1 DNA gyrase B [Cycloclasticus sp. NOP-122A]
 gi|13487317|gb|AAK27491.1|AF343328_1 DNA gyrase B [Cycloclasticus sp. N-221A]
 gi|13487319|gb|AAK27492.1|AF343329_1 DNA gyrase B [Cycloclasticus sp. N-231B]
 gi|13487321|gb|AAK27493.1|AF343330_1 DNA gyrase B [Cycloclasticus sp. P-211A2]
          Length = 362

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 207/365 (56%), Positives = 272/365 (74%), Gaps = 3/365 (0%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           EG+ +   +  G    PL V G     TG  + F PS   FS  +F++D L  RLRELSF
Sbjct: 1   EGSQHYQLYKKGEPVEPLKVVGP-PEKTGPSLRFKPSIGTFSNIEFHFDLLAKRLRELSF 59

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           LNS V+I L D+R+ +       Y+GGI+AFV++L+++K  + ++ I I   ++++++++
Sbjct: 60  LNSGVRIRLSDERTAKE--EIFEYEGGIKAFVNHLNKNKSQIHENIIYINVDKNDVNVEV 117

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           A++WND Y EN+ C+TNNIPQ+DGGTHL+G R+ LTR +  Y+E S  +KK K +  GDD
Sbjct: 118 ALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRAGLTRTLNQYIEGSGLAKKQKVTTSGDD 177

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T+VLS+K+PDP+FSSQTK+KLVSSEV+S+VES + + L  +L E+P EAK I  K
Sbjct: 178 AREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKSIVESSLAEALQEFLLENPTEAKEIAGK 237

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
           +L+A+  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SE+FLVEGDSAGGSAKQ
Sbjct: 238 MLEAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSEIFLVEGDSAGGSAKQ 297

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR R  QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG++ +    LRYHKII
Sbjct: 298 GRDRRTQAILPLKGKILNVEKARFDKMLSSDEVGTLITALGCGIGKEEYKPENLRYHKII 357

Query: 502 IMTDA 506
           IMTDA
Sbjct: 358 IMTDA 362


>gi|93004067|emb|CAI94334.2| gyrase B [Helicobacter muridarum]
          Length = 366

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 170/371 (45%), Positives = 243/371 (65%), Gaps = 5/371 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + I +   IY+  F  GI    L VTGS     GT + FLP 
Sbjct: 1   GLHGVGVSVVNALSKHLIMTIHKNNKIYKQEFKQGIPITELEVTGSTK-KHGTIIEFLPD 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           SDI  + DF+ + L  R +E+++L   + I   D+R       T  ++GG+  F+   D 
Sbjct: 60  SDIMEIIDFDSNILIKRFKEMAYLTHGITIHFHDERDGTK--ETFSFEGGLRQFIL--DI 115

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K+ L+   I  +   D   I++A+ +N+GY E +L F NNI   DGGTH SG R+ L+R
Sbjct: 116 NKRNLITDVISFEAEEDETQIEIALAYNEGYDEKLLSFVNNIRTPDGGTHESGFRAGLSR 175

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I +Y+E +  +++    V+GDD REG   ++S K+ +P+F  QTK KL +S VR + + 
Sbjct: 176 VILNYIESNASAREKDVKVLGDDVREGLVGIISTKIMEPQFEGQTKGKLGNSFVRGITQK 235

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
              + ++ + EE+P +AK+I++KVL A+  R+AA++ARDLTR+   + +++LPGKLADC 
Sbjct: 236 LTYEKINKFFEENPTQAKLIMQKVLVAARGREAAKKARDLTRKDTKISVSTLPGKLADCQ 295

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +DP++SE++LVEGDSAGGSAKQGR R NQAILPLRGKILNVE++R D +L S+EI  +I
Sbjct: 296 SKDPRESEIYLVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKSRIDMILKSEEIKNMI 355

Query: 479 TALGTGIGQDS 489
           TA G GIG + 
Sbjct: 356 TAFGCGIGSEF 366


>gi|194477396|gb|ACF74794.1| DNA gyrase subunit B [Halorubrum tibetense]
          Length = 388

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 188/389 (48%), Positives = 260/389 (66%), Gaps = 6/389 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILD---NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           ALS  L++ +KR+G ++   F  G         V    +G  TGT + F P  ++F   D
Sbjct: 1   ALSERLEVELKRDGGVFRHRFERGEPAPDGFERVRDMESGESTGTHIRFWPDDEVFETTD 60

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F + TL +RLREL+FLNS V+I+L D RS E    T  Y GGI  FV YL+  + P+ + 
Sbjct: 61  FEFSTLSNRLRELAFLNSGVEITLADDRSDEA--ETFRYDGGIREFVGYLNETRTPIHEE 118

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I  +G  D + +++AM+  +    +V  F NNI  ++GGTHL+G ++ALTR +  Y  +
Sbjct: 119 VIYFEGEDDGVHVEVAMQATEELQGSVHAFANNINTREGGTHLTGFKTALTRVVNDYANE 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                    ++ G+D REG T+V+S+K PDP+F  QTK KL +SEVR VVES  ++ L  
Sbjct: 179 HGLIDDLDANLKGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGVVESATHERLGT 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P  A+ +V K  +A+  R AA++A +LTRRK  L+  +LPGKLADC  RDP ++E
Sbjct: 239 FFEENPDTARKVVHKAAEAARARKAAKKAEELTRRKSALESTALPGKLADCQTRDPTEAE 298

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LF+VEGDSAGGSAKQGR+RENQAILPL+GKILNVE+ R D++L + EI  LITA+G GIG
Sbjct: 299 LFVVEGDSAGGSAKQGRNRENQAILPLKGKILNVEKHRLDRILENDEIRALITAIGAGIG 358

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           ++ FDI+ +RY+KII++ DADVDGAHIRT
Sbjct: 359 EE-FDIDDVRYNKIILLVDADVDGAHIRT 386


>gi|156071396|dbj|BAF75805.1| DNA gyrase subunit B [Bradyrhizobium yuanmingense]
          Length = 277

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 151/258 (58%), Positives = 187/258 (72%), Gaps = 2/258 (0%)

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHGV
Sbjct: 21  VEVILNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 80

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTFL S++ F 
Sbjct: 81  GVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFLASTETFK 140

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             ++++ TL+HRLREL+FLNS V I L D R    +   MFY GG+E FV YLDR+KK L
Sbjct: 141 NIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMFYSGGVEEFVKYLDRNKKAL 200

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           + +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+  Y
Sbjct: 201 VPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGY 260

Query: 304 VEKSFGSKKDKRSVIGDD 321
            E +  +KK+K ++ GDD
Sbjct: 261 AEAN--AKKEKIALTGDD 276


>gi|254055413|gb|ACT64306.1| GryB [Brevibacterium iodinum]
          Length = 385

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 167/386 (43%), Positives = 239/386 (61%), Gaps = 22/386 (5%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG +VVNALS  L++ ++R+G ++ M F+ G+    L   G A ++TGT VTF P   I
Sbjct: 1   GVGSTVVNALSERLEVEVRRDGYVWTMDFVRGVPSGELQR-GEATDETGTTVTFWPDGSI 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-----------------PEPREITMF 224
           F   DF+Y+ L+ R ++++FLN  ++ISL D+R                   +PR +T  
Sbjct: 60  FETTDFSYEYLRARFQQMAFLNKGLKISLTDERHNEVDDDDVQIDENEATEWKPRTVTYE 119

Query: 225 YKGGIEAFVSYLDRHKKPL--MQSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNNI 280
           Y  G+  +V YL+  KK        I  +      ++  ++AM+W   Y+E+V  + N I
Sbjct: 120 YANGLLDYVEYLNSTKKADLVHPDVIVFEAEEGEQTLALEIAMQWTTSYNESVHTYANVI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  + +Y ++    +    ++ GDD REG T+V+S+K+ DP+F 
Sbjct: 180 NTHEGGTHEEGFRTALTSLVNAYAKEQKLLRDKDPNLTGDDIREGLTAVISVKLGDPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +SEV+  V+  V D L  W E +P +AK +V+K L AS  R AAR+AR+ TR
Sbjct: 240 GQTKTKLGNSEVKGFVQRVVRDELGHWFESNPAQAKDVVRKALQASQARLAARKAREATR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG+L+ + +PGKL DC  +DP  SE+F+VEGDSAGGSA QGR+   QAILPLRGKILNV
Sbjct: 300 RKGLLESSGMPGKLKDCQSKDPTISEVFIVEGDSAGGSATQGRNPNTQAILPLRGKILNV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGIG 486
           E+AR D+ L + E+  +ITA GTGIG
Sbjct: 360 EKARLDRALGNNEVQAMITAFGTGIG 385


>gi|15551683|emb|CAC69425.1| DNA gyrase B subunit [Serratia odorifera]
          Length = 323

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 181/326 (55%), Positives = 239/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQTPLKVVGETE- 59

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS   F +  +F YD L  RLRELSFLNS V I L DKR  +       Y+
Sbjct: 60  QTGTTVRFWPSYQTFTNQTEFQYDILAKRLRELSFLNSGVSIRLKDKRDDKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPTVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAAMTRTLNNYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VES +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVESLMNEKLVDYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPAMSELYLVEG 323


>gi|19568163|gb|AAL91672.1|AF316502_1 putative topoisomerase IV subunit B [Aggregatibacter
           actinomycetemcomitans]
          Length = 294

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 108/298 (36%), Positives = 155/298 (52%), Gaps = 6/298 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
            ++Y A+ I +LK L+ V+ RP MY   TD     +H+  EV+DN++DE+L G+A  I V
Sbjct: 2   TTNYSANEITVLKDLEPVQLRPGMY---TDTTRP-NHLAQEVIDNSVDEALAGFATKIEV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V DNGRG+P D+H  E +S  EVIM++LHAGGKF+ K+Y  SGGLHGVG+S
Sbjct: 58  ILHKDQSIEVIDNGRGMPVDIHPVEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  + + +KR   IY+++F NG     L V        TGT V F P+   F  +
Sbjct: 118 VVNALSERVDVTVKRNSEIYKIAFENGKKVEDLTVIGTCGRRTTGTTVHFKPNPKYFDSE 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L+H LR  + L S ++I  ID  +                  +       P   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDNVNDTEDTWLYQDGLNDYLMEAVNGLVTLPEQP 237

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                 G ++ +S    +   +G       + N IP   GGTH++GLR  L   +  +
Sbjct: 238 FIGEFNGEKEAVSW-ALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGLLDAMREF 294


>gi|215271408|emb|CAR48193.1| gyrase B subunit [Vibrio campbellii]
          Length = 350

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 197/352 (55%), Positives = 270/352 (76%), Gaps = 3/352 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +F+YD
Sbjct: 1   LSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIEFHYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++     
Sbjct: 60  ILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHF 118

Query: 251 QGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
              R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   
Sbjct: 119 DFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGF 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L 
Sbjct: 179 SKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLI 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++
Sbjct: 239 ENPTEAKMVCSKIIDAAGAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYI 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 299 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|188037436|gb|ACD46333.1| DNA gyrase subunit B [Providencia sneebia]
          Length = 270

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 155/273 (56%), Positives = 200/273 (73%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+GN++
Sbjct: 1   IHEEEGVSAAEVIMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGNVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSS 205
           E  + +G    PL V G   + TGT V F PS + F  V +F Y+ L  RLRELSFLNS 
Sbjct: 61  EQIYRHGEPQGPLTVVGET-DQTGTRVRFWPSLETFKGVTEFEYEILAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I LIDKR+ +       Y+GGI+AFV YL R+K P+  S       +D I +++AM+W
Sbjct: 120 VSIKLIDKRNGKE--DHFHYEGGIKAFVEYLSRNKNPIHPSVFYFSTEKDGIGVEIAMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV C+TNNIPQ+DGGTHL+G R+A+TR + +Y++K    KK + S  GDD REG
Sbjct: 178 NDGFQENVYCYTNNIPQRDGGTHLAGFRAAMTRTLNNYMDKEGYQKKIQVSATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|6318243|emb|CAB60271.1| DNA gyrase B subunit [Photobacterium damselae subsp. damselae]
          Length = 324

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 194/321 (60%), Positives = 250/321 (77%)

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK   SKK K +  GDD REG T+V+S+K+
Sbjct: 1   CFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKV 60

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           PDP+FSSQTK+KLVSSEV+S VES + + L  +L E+P +AK +  K++DAS  R+AAR+
Sbjct: 61  PDPKFSSQTKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARK 120

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+
Sbjct: 121 AREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 180

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE+ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVDG+HIR
Sbjct: 181 GKILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 240

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           TLLLTFF+RQMP LI  G +YI +PPLY + +GK  QY+KD+E ++ +  + +L      
Sbjct: 241 TLLLTFFYRQMPELIERGHIYIAQPPLYKVKKGKQEQYIKDDEDMQQFQTSLALENAALF 300

Query: 575 FCDSKGVISKNDLRNFIDDAL 595
             +    ++   L N +    
Sbjct: 301 TTEGAPAMAGLALENLVGQYN 321


>gi|320166777|gb|EFW43676.1| DNA topoisomerase II [Capsaspora owczarzaki ATCC 30864]
          Length = 1628

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 130/588 (22%), Positives = 231/588 (39%), Gaps = 68/588 (11%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAIDE 55
            L+  D +  RP  YIG    E+                     GL  +  E+L NA D 
Sbjct: 57  KLELRDQILLRPDTYIGGVATETKNLWVCNEEGKFENRDVSFVPGLFKIFDELLVNASDN 116

Query: 56  -----SLEGYADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
                S+      I V +N  D + +V ++G+GIP  +H +E +    +I + L     +
Sbjct: 117 KQRDSSM----TTIRVDINQADNTISVWNDGKGIPIRMHTKENVWVPTLIFSHLLTSDNY 172

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAGN 167
                K +GG +G G  + N  S+   +          ++  F   +  +   +   +  
Sbjct: 173 TTNKKKTTGGRNGYGAKLANIFSTEFVVETQDHETKQRFKQVFTKNMSQSGQAIISPSEG 232

Query: 168 DT---GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            +    T++TF P    F +   + D     + R+ +++     +++ L D   P    +
Sbjct: 233 GSKGDFTKITFKPDLSRFKMDYLDDDIVGLFRRRVYDIAGCMRGLKVYLNDNLIPIRSFV 292

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                   +A                  I   R +   ++ +      H+ V  F N I 
Sbjct: 293 DYVKLYLPDA--------------PLNSIAHERVSDRWEVCVTVAPDGHQQV-SFVNGIN 337

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GGTH++ +   +   I+  +++  G++  K        +   +  ++  + DP F S
Sbjct: 338 TYTGGTHVNHVLELIYPTISKALKQPKGNEIKKPQ-----IKNNISIFVNALIDDPTFKS 392

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           Q+KE+L  S      E   +D  +  L         IV+ +LD +  +      +   R+
Sbjct: 393 QSKEELSLSVKEFGSECTFSDKFNKALLSTG-----IVQAILDKNNEKLRKELDKISGRK 447

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRGKIL 458
              +   +      +   R+  +  L L EGDSA   A  G     R+   + PLRGK+L
Sbjct: 448 SSKISGIAKLDDANEAGGRNSAQCTLILTEGDSAKALAVSGLGLVGRDYYGVFPLRGKLL 507

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           NV  A   ++  +QEI  +I  LG    +    +  LRY +++IMTD D DG+HI+ LL+
Sbjct: 508 NVRDAAHHQIRENQEIEHVIKILGLQFNKKYTSVEGLRYGRLMIMTDQDSDGSHIKGLLI 567

Query: 519 TFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
            F     PSL+  +GFL     P+   T+GK +         + +   
Sbjct: 568 NFLHHFWPSLLTVSGFLVEFITPIVKATKGKQVLTFFTVPQYQQWREE 615


>gi|118201794|gb|ABK79710.1| DNA gyrase subunit b [Roseivivax halodurans]
          Length = 357

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 218/357 (61%), Positives = 267/357 (74%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F  G     L V G A    GTEV FL S+D FS  D++
Sbjct: 1   NALSDWLELRIWRNGKEHLARFERGDTAKHLEVVGDAEGMQGTEVRFLASTDTFSNLDYD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           + TL+ RLREL+FLNS V+I L D+R  EP  + +FY+GG++ FV YLDR K P+M  PI
Sbjct: 61  FHTLEKRLRELAFLNSGVRILLEDERPAEPLSVELFYEGGVKEFVKYLDRSKHPMMPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G RD IS+++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR IT Y   S 
Sbjct: 121 YITGERDGISVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTITRYATDSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES +N+ LS W 
Sbjct: 181 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESMMNEKLSEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EA+ IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+ELF
Sbjct: 241 EENPNEARTIVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTELF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           +VEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 IVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|284813080|gb|ADB97209.1| DNA gyrase subunit B [Ignatzschineria ureaclastica]
          Length = 352

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 194/355 (54%), Positives = 254/355 (71%), Gaps = 3/355 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LSS LKL I + G I+E  +  G  D PL   G   +  GT V F PS ++F+   F YD
Sbjct: 1   LSSKLKLTIYKHGKIHEQEYSGGEPDYPLREIGET-DQHGTTVHFKPSKEVFNDITFEYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLREL+FLNS ++I+  D+R+ +       Y GGI A+V  +++++  +       
Sbjct: 60  ILYKRLRELAFLNSGIRIAFKDERTDKG--EVFEYAGGIRAYVELINKNRNEIHPHIFYC 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
              +DNI++++A +W DGY E+V C+TNNIPQ DGGTHL+G R+A+TR +  Y++     
Sbjct: 118 DCQKDNINVEIAFQWTDGYQESVYCYTNNIPQSDGGTHLAGFRAAMTRTLNRYMQDEGLL 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG T+++S+K+P P+FSSQTKEKLVSSEVR VV+  + + L  +L E
Sbjct: 178 KKLKVATSGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPVVDGVLAERLEQFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           HP +AK I  K++DA+M R+AAR+AR+ TRRK  LDIA LPGKLADC E+DP +SELF+V
Sbjct: 238 HPDDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLADCQEKDPAQSELFIV 297

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFD+M+SS EIGTLITALG GI
Sbjct: 298 EGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMISSAEIGTLITALGCGI 352


>gi|148470280|gb|ABQ66087.1| gyrase b [uncultured bacterium]
          Length = 432

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 162/437 (37%), Positives = 223/437 (51%), Gaps = 25/437 (5%)

Query: 97  EVIMTRLHAGGKFNQKS----YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           EVIMT LHAGGKF++KS    Y  SGGLHGVGVSV NALS  L++ +KREG ++ M+F +
Sbjct: 1   EVIMTVLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMTFGD 60

Query: 153 GILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           G +  PL V G+ G  +TGT V   P    F     N   L+  LR  + L   V + L 
Sbjct: 61  GFVIEPLAVQGTCGVRNTGTRVRVWPDPRYFDEPQINLIELERGLRSKAVLLPGVSVRLR 120

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID----------- 260
            +      E T  Y GG+E +++        L+       G R     +           
Sbjct: 121 KEGDGRTLEQTWHYPGGLEQYLTERLGEDPLLIPV---FTGDRFFGVEEGDSFAPGEGAS 177

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
            A  W++        F N IP   GGTH +GLR+ L   + S++E      +    +  +
Sbjct: 178 WAFSWHETRSLQGESFVNLIPTPLGGTHEAGLRTGLFEALKSFIEHHGLLPRG-VRLQLE 236

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D       +LSI+M DP+F  QT++KL S E   +V + V D    WL +H    K +  
Sbjct: 237 DVSARLQFILSIRMLDPQFQGQTEDKLTSREALKLVSTLVRDPFEHWLNQHVEHGKALAD 296

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
            V+  +M R  +        ++    +A LPGKL DC      + ELFLVEGDSAGGSAK
Sbjct: 297 LVIRQAMARMKSG---QRIEKRKSSGVAVLPGKLTDCESERIDERELFLVEGDSAGGSAK 353

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYH 498
             R++  QAILPLRGK+LN       ++ ++ EI  +  ALG         ++  + RY 
Sbjct: 354 MARNKLTQAILPLRGKVLNSFEVEQGRLFANTEIHDIAVALGIDPHGRGEPVDLSQRRYD 413

Query: 499 KIIIMTDADVDGAHIRT 515
           +IIIMTDADVDG+HIRT
Sbjct: 414 RIIIMTDADVDGSHIRT 430


>gi|298253933|ref|ZP_06977520.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis 5-1]
 gi|297532076|gb|EFH71051.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis 5-1]
          Length = 796

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 101/254 (39%), Positives = 144/254 (56%), Gaps = 27/254 (10%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
               YDADS+ +L+GLDAV+KRP MYIG TD + GL H ++E++DNA+DE+L G  D I 
Sbjct: 4   HKEQYDADSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNAVDEALAGACDHII 62

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  +GGLHGVG 
Sbjct: 63  VTLHDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGS 122

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL------------------------DNPLVV 161
           SVVNALS  L + + R+G  + M+F  G                             L +
Sbjct: 123 SVVNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKPTELEI 182

Query: 162 TGS-AGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            G+ +   TGT V +    +IF+    F+Y+ L  R+R+ SFL   ++I++ID+  PE  
Sbjct: 183 IGTVSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDEHVPEGE 242

Query: 220 EITMFYKGGIEAFV 233
              +      +  V
Sbjct: 243 SANIEEIDSTKDDV 256



 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 133/436 (30%), Positives = 209/436 (47%), Gaps = 35/436 (8%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-------------- 258
           +    PR +   + GG++ FV +L +     +    RI G    +               
Sbjct: 331 QNKHHPRVVEFLHNGGVKDFVDFLSKG--EAVSDIWRISGEDTYVEETQAVDSAGDLHAQ 388

Query: 259 -------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF--- 308
                  +D+AMRW +GY   ++ F N +    GG H+ G    LT+QI   VE +    
Sbjct: 389 QVTRKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKL 448

Query: 309 --GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K     +  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 449 KVNLKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGE 508

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   + 
Sbjct: 509 MITGSKRGFKEQSSRVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGND 568

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 569 DVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVG 628

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G   FDI++ RY+KI++MTDADVDGAHIR LLLT F+R M  LI +G +Y   PPL+
Sbjct: 629 AGSGAS-FDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLH 687

Query: 543 GITR--GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
            I     +  +Y+      E       L  +   F             +    A      
Sbjct: 688 RIALAGKRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDP 747

Query: 601 IKDFYPNHDKTFIEQA 616
                        +QA
Sbjct: 748 RTRMLRRIRMEDAQQA 763



 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLL 763
              G+ I       L   +  +  KGI     +QRYKGLGEM+A QL +TT++P TR L 
Sbjct: 694 KRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRMLR 753

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+++ DA QA ++F  LMGD+V PR++FI +N+
Sbjct: 754 RIRMEDAQQASEVFDLLMGDDVPPRKQFIVDNA 786


>gi|68166168|gb|AAY88017.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166170|gb|AAY88018.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166172|gb|AAY88019.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166174|gb|AAY88020.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166176|gb|AAY88021.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166178|gb|AAY88022.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|73698012|gb|AAZ81551.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|73698014|gb|AAZ81552.1| DNA gyrase subunit B [Listeria seeligeri]
          Length = 217

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 108/219 (49%), Positives = 142/219 (64%), Gaps = 3/219 (1%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNM 70
           + D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAIDE+L G+   I +T+  
Sbjct: 1   NEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAIDEALAGFCTEIEITIEA 59

Query: 71  DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNA 130
           D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    YKVSGGLHGVG SVVNA
Sbjct: 60  DNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVGASVVNA 119

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS++L++ + REG  Y   F  G +   +   G   +  GT V F P   IFS    F++
Sbjct: 120 LSTYLEVYVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQIFSETTEFDF 178

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           DTL+ R REL+FLN  + IS+ DKR          Y+GG
Sbjct: 179 DTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGG 217


>gi|299855525|gb|ADJ57304.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 370

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 207/372 (55%), Positives = 279/372 (75%), Gaps = 3/372 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F    F++
Sbjct: 2   ALSEILVLTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTQIHFKPSAETFKNIHFSW 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  R+RELSFLNS V I   D+RS +       Y+GG+ AFV YL+ +K P+ Q    
Sbjct: 61  DILAKRIRELSFLNSGVGIVXKDERSGKE--ELFKYEGGLRAFVDYLNTNKTPVNQVFHF 118

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+E    
Sbjct: 119 NVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGL 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L 
Sbjct: 179 AKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLL 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+L
Sbjct: 239 ENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYL 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG++ 
Sbjct: 299 VEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREE 358

Query: 490 FDINKLRYHKII 501
           ++I+KLRYH II
Sbjct: 359 YNIDKLRYHNII 370


>gi|118201782|gb|ABK79704.1| DNA gyrase subunit b [Oceanicola batsensis]
          Length = 357

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 212/357 (59%), Positives = 272/357 (76%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R+G  + + F + +   PL V G A  + GTEV FL S+  FS  +++
Sbjct: 1   NALSDWLELRIWRDGKEHYVRFEDSVTVEPLKVVGDADGEKGTEVRFLSSTQTFSNLNYD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y TL+ RLREL+FLNS V+I L D+R  EP    +FY+GG++ FV YLDR K+ +M  PI
Sbjct: 61  YATLEKRLRELAFLNSGVRIVLEDERPAEPLRTELFYEGGVKEFVKYLDRSKQAMMSEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            ++G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR +T Y  +S 
Sbjct: 121 HVEGERDGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRTLTRYATESG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ V + L+ W 
Sbjct: 181 VAKREKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVGEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAK+IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPNEAKMIVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+MLSSQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLSSQEIGNLVMALGTGI 357


>gi|324962688|gb|ADY62446.1| gyrase subunit B [Frankia sp. NRRLB-16467]
          Length = 360

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 158/359 (44%), Positives = 215/359 (59%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           +L  DG+  V DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   SLLADGAVRVVDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+++   ++      PL V       TGT VTF     IF   +
Sbjct: 61  VVNALSTKLDVEIQVDGHVWFQPYVATRPAAPL-VKTGTTKKTGTSVTFWADPTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + ++TL  RL+E++FLN  + I+LID+R  E  E+T  Y  G+  FV++L+  K  + +S
Sbjct: 120 YKFETLSRRLQEMAFLNKGLSITLIDERPEERLEVTYKYSNGLVDFVAHLNATKDAIHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I  +LAM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLESKGVGIEAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +  V+  
Sbjct: 240 QNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLRNTEAKKFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARAIVSKSLDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|295979499|dbj|BAJ07422.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979517|dbj|BAJ07431.1| DNA gyrase subunit B [Planktothrix agardhii]
          Length = 352

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 157/352 (44%), Positives = 217/352 (61%), Gaps = 7/352 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I +  N +GS TV+D+GRGIP D H + G SA E ++T LHAGGKF    YKVS
Sbjct: 1   AGYCTHIEIDFNANGSVTVTDDGRGIPVDTHSKTGKSALETVLTVLHAGGKFGGGGYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL++ + R+   Y   F  G     L         TGT V FLP
Sbjct: 61  GGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPATELTSKPIKEARTGTSVCFLP 120

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEA 231
            + IF+   +F+ DT+  RLREL++LN+ V+I+L D          PR  T  Y+GGI  
Sbjct: 121 DTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRLELLNRENPRIETYCYEGGIRE 180

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +++Y++  K+PL +  I   G R N+ I++A++W  D Y + VL F NNI   DGGTHL 
Sbjct: 181 YIAYMNNDKQPLHEDIIYTCGERSNVQIEVALQWCTDAYSDTVLGFANNIRTIDGGTHLE 240

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GL++ LTR + +   K    K+ + ++ G++ REG T+V+S K+PDP F  QTK +L + 
Sbjct: 241 GLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAVISAKVPDPEFEGQTKTRLGNP 300

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           EVR +V+S V + L+ +LE +P  A  I++K + A    +AARRARDL RRK
Sbjct: 301 EVRGIVDSLVGEALTEYLEFNPGIADAIIEKAIQAFKAAEAARRARDLVRRK 352


>gi|153831515|ref|ZP_01984182.1| DNA gyrase, subunit B [Vibrio cholerae 623-39]
 gi|148873004|gb|EDL71139.1| DNA gyrase, subunit B [Vibrio cholerae 623-39]
          Length = 128

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/127 (69%), Positives = 109/127 (85%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           +++YD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DN+IDE+L GY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVS
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121

Query: 127 VVNALSS 133
           VVNALS 
Sbjct: 122 VVNALSE 128


>gi|153831459|ref|ZP_01984126.1| DNA gyrase subunit B [Vibrio cholerae 623-39]
 gi|148873059|gb|EDL71194.1| DNA gyrase subunit B [Vibrio cholerae 623-39]
          Length = 354

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 213/356 (59%), Positives = 278/356 (78%), Gaps = 3/356 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
           +   PL V G     TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+
Sbjct: 1   MPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHEN 272
           R  E ++    Y+GGI+AFV++L+R+K P+ +        R++ IS+++AM+WNDG+ EN
Sbjct: 60  R-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQEN 118

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           + CFTNNIPQ+DGGTHL+G R ALTR + +Y++K   SKK + +  GDD REG T+V+S+
Sbjct: 119 IYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSV 178

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK +  K++DA+  R+AA
Sbjct: 179 KVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAA 238

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 239 RKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILP 298

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           L+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV
Sbjct: 299 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 354


>gi|119226168|dbj|BAF41063.1| DNA gyrase subunit B [Tsukamurella inchonensis]
 gi|211927109|dbj|BAG82807.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 428

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 172/429 (40%), Positives = 247/429 (57%), Gaps = 38/429 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF----INGILDNPLVVTGSAG 166
             +Y VSGGLHGVG+SVVNALSS +++ I  +G  ++ +F             ++ G   
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKVEVEIDVDGYHWQQNFHWDDKKRDSVAEDLIKGEPT 60

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------- 216
             TGT V F     +F+    ++++T+  RL+E++FLN  + I+L D+R           
Sbjct: 61  ERTGTTVRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAVEVPDEDT 120

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGS 253
                                + RE    Y  G+  +V +++    K P+  S I  +G 
Sbjct: 121 TEEAPSAAEDDVAAALAEVAPKKRERIFHYPDGLVDYVKHINARTSKSPIHGSIISFEGK 180

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                I++AM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y +     K+ 
Sbjct: 181 EKGHEIEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLVKEK 240

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              + GDD REG  +V+S+K+ +P+F  QTK KL ++EV+S V+    + L  W + +P 
Sbjct: 241 DGELSGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCREQLQFWFDSNPA 300

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AK IV+K   ++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGD
Sbjct: 301 DAKTIVQKAAASAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIVEGD 360

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAK GR    QAILP+RGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI 
Sbjct: 361 SAGGSAKSGRDSMYQAILPIRGKIINVEKARIDKVLKNAEVQSIITAFGTGI-HDEFDIA 419

Query: 494 KLRYHKIII 502
           KLRY KI++
Sbjct: 420 KLRYKKIVL 428


>gi|284813082|gb|ADB97210.1| DNA gyrase subunit B [Ignatzschineria larvae]
          Length = 352

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 192/355 (54%), Positives = 254/355 (71%), Gaps = 3/355 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  LKL I + G I+E  +  G  D PL   G   +  GT V F PS ++F+   F YD
Sbjct: 1   LSEKLKLTIYKHGKIHEQEYTGGEPDYPLREIGET-DQHGTTVYFKPSKEVFTDTTFEYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLREL+FLNS ++I+  D+R+ +       Y+GGI A+V  +++++  +       
Sbjct: 60  ILYKRLRELAFLNSGIRITFKDERTDKG--EVFEYEGGIRAYVELINKNRNEIHPHIFYC 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
              +DNI++++A +W DGY E+V C+TNNIPQ DGGTHL+G R+A+TR +  Y++     
Sbjct: 118 DCQKDNINVEIAFQWTDGYQESVYCYTNNIPQSDGGTHLAGFRAAMTRTLNRYMQDEGLL 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG T+++S+K+P P+FSSQTKEKLVSSEVR VV+  + + L  +L E
Sbjct: 178 KKLKVATSGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPVVDGVLAERLEQFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           HP +AK I  K++DA+M R+AAR+AR+ TRRK  LDIA LPGKLADC E+DP +SELF+V
Sbjct: 238 HPDDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLADCQEKDPAQSELFIV 297

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           EGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFD+M++S EIGTLITALG GI
Sbjct: 298 EGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMIASAEIGTLITALGCGI 352


>gi|197295767|gb|ACH58593.1| gyrase subunit B [Methylobacterium extorquens]
          Length = 383

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 226/372 (60%), Positives = 285/372 (76%), Gaps = 2/372 (0%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ LKLRI R G  + M F +G    PL V G AG+  GTEVTFLPS++ F++ +
Sbjct: 1   VVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLPSTETFTMTE 60

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL--M 244
           F+Y TL+ RLREL+FLNS V+I + D R  E +   + Y+GG+EAFV YLDR +KP+  M
Sbjct: 61  FDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKREELCYEGGVEAFVRYLDRSRKPVDGM 120

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
             P+ + G RD I +++A+ WND ++E VL FTNNIPQ+DGGTH++G R+ALTRQ+T Y 
Sbjct: 121 TKPVTVLGERDGIRVEVALWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAALTRQLTGYA 180

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E S  +K++K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLVSSEVR  VE+ +N+GL
Sbjct: 181 ESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPAVENILNEGL 240

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S WLEE+P +AK ++ KV+ A+  R+AAR+AR+   RKG LDIASLPGKLADC ERDP K
Sbjct: 241 STWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIASLPGKLADCQERDPSK 300

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
            EL LVEGDSAGGSAKQGR R  QA+LPLRGKILNVER R D+MLSS EIGTLITALG G
Sbjct: 301 CELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIGTLITALGAG 360

Query: 485 IGQDSFDINKLR 496
           IG+ S D   L 
Sbjct: 361 IGRSSTDXXGLN 372


>gi|306517911|emb|CBL53379.1| gyrase B subuni [Photobacterium angustum]
          Length = 362

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 208/364 (57%), Positives = 279/364 (76%), Gaps = 3/364 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           ++L I+R G+IY+  + +G+ D PL V G     TGT + F PS D F+  +F+YD L  
Sbjct: 1   VELTIQRAGHIYQQVYRHGVPDAPLAVIGDTE-KTGTRIRFWPSEDTFTNIEFHYDILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I+L D+R  + +E    Y+GGI AFV +L+R+K P+          R
Sbjct: 60  RLRELSFLNSGVSINLSDER-EDGKEDHFMYEGGIRAFVEHLNRNKTPIHPKVFHFDSER 118

Query: 255 DN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           D+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R ALTR + S+++K   SKK 
Sbjct: 119 DDGISVEVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKA 178

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L+ +  E+P 
Sbjct: 179 KAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFQLENPA 238

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AK +  K++DAS  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP   EL++VEGD
Sbjct: 239 DAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAVFELYIVEGD 298

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GIG+D ++ +
Sbjct: 299 SAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPD 358

Query: 494 KLRY 497
           KLRY
Sbjct: 359 KLRY 362


>gi|324962680|gb|ADY62442.1| gyrase subunit B [Frankia sp. NRRLB-16466]
 gi|324962682|gb|ADY62443.1| gyrase subunit B [Frankia sp. ACN1]
          Length = 360

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 158/359 (44%), Positives = 215/359 (59%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           +L  DG+  V DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   SLLADGAVRVVDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+++   ++      PL V       TGT VTF     IF   +
Sbjct: 61  VVNALSTKLDVEIQVDGHVWFQPYVATRPAAPL-VKTGTTKKTGTSVTFWADPTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + ++TL  RL+E++FLN  + I+LID+R  E  E+T  Y  G+  FV++L+  K  + +S
Sbjct: 120 YKFETLSRRLQEMAFLNKGLSITLIDERPEERLEVTYKYSNGLVDFVAHLNATKDAIHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I  +LAM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLESKGVGIEAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +  V+  
Sbjct: 240 QNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARAIVSKSLDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|324962678|gb|ADY62441.1| gyrase subunit B [Frankia sp. AvcI1]
          Length = 360

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 158/359 (44%), Positives = 215/359 (59%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           +L  DG+  V DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   SLLADGAVRVVDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+++   ++      PL V       TGT VTF     IF   +
Sbjct: 61  VVNALSTKLDVEIQVDGHVWFQPYVGTRPAAPL-VKTGTTKKTGTSVTFWADPTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + ++TL  RL+E++FLN  + I+LID+R  E  E+T  Y  G+  FV++L+  K  + +S
Sbjct: 120 YKFETLSRRLQEMAFLNKGLSITLIDERPEERLEVTYKYTNGLVDFVAHLNATKDAIHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I  +LAM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLESKGVGIEAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +  V+  
Sbjct: 240 QNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARAIVSKSLDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|163955216|ref|YP_001648320.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
 gi|163638665|gb|ABY28024.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
          Length = 1072

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 136/667 (20%), Positives = 246/667 (36%), Gaps = 80/667 (11%)

Query: 13  DSIQILKGLDAVKKRPSMYIG----------------------DTDGESGLHHMIYEVLD 50
           +S+Q L  ++ V KRP  Y+G                        +    L  +  E+L 
Sbjct: 3   ESVQKLTHIEHVLKRPDSYVGPVEIGCEPYWIFQKTDNQFKKKSLNYSPALLKIFDEILV 62

Query: 51  NAIDESLEGY---ADIITVTLNMD-GSCTVSDNGR--GIPTDLHKEEGISAAEVIMTRLH 104
           NAID     +     +I+  ++ + G+ T+ +NG   G+   +H++EGI   E+    L 
Sbjct: 63  NAIDR-NSLHPKSCTLISAGIDKETGAVTIENNGPLGGVGVRMHEKEGIWNPELTFGHLL 121

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI---YEMSFINGILDN-PLV 160
               ++    ++ GG +G G  + N  SS   + IK +G     Y   + N +    P  
Sbjct: 122 TSTNYDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIK-DGETKQCYTQKWNNNMTVCHPPK 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFN---YDTLQHRLRELS-FLNSSVQISLIDKRSP 216
           +T  + + +   +TF+P    F +   +   Y   + R+ + +     + ++    +  P
Sbjct: 181 ITKHSASTSSVSITFIPDWKRFGMNKMDNNIYKIFEKRVWDANICTTPNCKVKFQGEALP 240

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +                          +     +   R ++ I              + F
Sbjct: 241 KTSFEAYA--------------KMHEGVSEVSSVTTDRWSVCI-----GPSENGLEQVSF 281

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I    GGTH+  + S +   I   + K       K  +     +  F   +   + +
Sbjct: 282 VNGICTTKGGTHVDHVASYIASGIIDEMAK-------KIKLKPQQVKNTFNIFVKATLEN 334

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P FSSQ K +  S       + F +                I +++   S  ++     +
Sbjct: 335 PTFSSQVKSECTSKA-----QDFGSKFEPPKNFVKNALKTGIQEELTALSKFKEMKELKK 389

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPL 453
               RK  +                  K  L + EGDSA   A  G S   R++  + PL
Sbjct: 390 TDGARKSKITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPL 449

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK  NV  A   ++ S+QE   L   LG   G++  D+++LRY +++IMTDAD DG+HI
Sbjct: 450 RGKCKNVRDASVAQLTSNQEFNDLKKILGLQQGKEYQDVSELRYGRLMIMTDADNDGSHI 509

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           + L+L       PSL+  GF+  +  P+   ++G   +    + +   +  N     +I+
Sbjct: 510 KGLILNMIHYFWPSLLKLGFVVSMVTPIIKASKGTQSKSFYTDSAFRSWYGNGQPGWKIK 569

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +       S          A +  K I+D     D   +    I   F+ +   +    
Sbjct: 570 YYKGLGTSTSAE--------AREYFKKIQDLTVKFDMDIMTDKSIVLAFDKKKADDRKTW 621

Query: 634 LASKLAN 640
           L    A 
Sbjct: 622 LLESTAK 628


>gi|313768187|ref|YP_004061618.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599794|gb|ADQ91815.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 1073

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 132/666 (19%), Positives = 238/666 (35%), Gaps = 73/666 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDG--------------------ESGLHHMIYEVLDN 51
           ++SIQ L  ++ + KRP  Y+G                           L  +  E+L N
Sbjct: 2   SESIQKLTHVEHILKRPDSYVGPVSRVAEPYWIYENDQFEKKTVVYSPALLKIFDEILVN 61

Query: 52  AIDESLEGYADIIT---VTLNM-DGSCTVSDNGR--GIPTDLHKEEGISAAEVIMTRLHA 105
           AID +   Y   +T   V+++   G  T+ +NG   GI   +H++EG+   E+    L  
Sbjct: 62  AIDRNSM-YPKNVTSMSVSIDKISGEITIENNGPLGGIAVKMHEKEGLWNPELTFGHLLT 120

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN---IYEMSFINGILDNPLVVT 162
              ++    +V GG +G G  + N  SS   ++IK +G    IY   + + +        
Sbjct: 121 STNYDDTQKRVVGGRNGYGAKLTNVYSSKFSVKIK-DGENKCIYTQEWSDNMKTCGTPKI 179

Query: 163 GSAGNDTGT-EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
               N T +  +TF+P    F +   +    +   + +   N           + +  ++
Sbjct: 180 KKYSNATSSVSITFVPDWKRFGMSKMDDSIYKIFEKRVYDANI---------CTSQNCKV 230

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                   +A  +   +               R ++ I  +   +DG+    + F N I 
Sbjct: 231 KFQGDALPKATFNTYAKMYTKS-DEICTFTSDRWSVCIAPS---DDGFEH--VSFVNGIC 284

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
              GG+H+  +   L   +   + K       K  +     +  F   +   + +P FSS
Sbjct: 285 TTKGGSHVDHVSGILANGVIEDMAK-------KIKLRPQQVKNAFFVFVKATLVNPSFSS 337

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA-----SMVRDAARRAR 396
           Q K +                   +  E      K I+K  + +     S  R+     +
Sbjct: 338 QVKSECTLKPQD----------FGSKFEPPKTFIKNILKTSVQSELTALSKFREMKELKK 387

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPL 453
               RK  +                  K  L + EGDSA   A  G S   R++  + PL
Sbjct: 388 TDGSRKSKITGIPKLDDANKAGTTHSGKCTLIITEGDSAKTLAIAGLSVVGRDHYGVFPL 447

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK  NV  A   ++  ++E   L   LG   G+    +++LRY +++IMTDAD DG+HI
Sbjct: 448 RGKCKNVRDASVKQLTENKEFNDLKKILGLQQGKVYTSLSELRYGRLMIMTDADNDGSHI 507

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           + L+L       PSL+   F+  +  P+   ++G   +    + +   +  N     +I+
Sbjct: 508 KGLILNMIHYFWPSLLKLKFVVSMVTPIIKASKGSETKSFYTDSTFRHWYGNGKAGWKIK 567

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +       S    R +      +           +   +               E    
Sbjct: 568 YYKGLGTSTSAEA-REYFKKIKDLTVQFDTDNSMDESIVLAFDKTKSDLRKTWLLESTEK 626

Query: 634 LASKLA 639
            AS+L 
Sbjct: 627 KASELE 632


>gi|290343684|ref|YP_003495051.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
 gi|260161099|emb|CAY39800.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
          Length = 1072

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 137/667 (20%), Positives = 246/667 (36%), Gaps = 80/667 (11%)

Query: 13  DSIQILKGLDAVKKRPSMYIG----------------------DTDGESGLHHMIYEVLD 50
           +S+Q L  ++ V KRP  Y+G                        +    L  +  E+L 
Sbjct: 3   ESVQKLTHIEHVLKRPDSYVGPVEIGCEPYWIFQKTDNQFKKKSLNYSPALLKIFDEILV 62

Query: 51  NAIDESLEGY---ADIITVTLNMD-GSCTVSDNGR--GIPTDLHKEEGISAAEVIMTRLH 104
           NAID     +     +I+  ++ + G+ T+ +NG   G+   +H++EGI   E+    L 
Sbjct: 63  NAIDR-NSLHPKSCTLISAGIDKETGAVTIENNGPLGGVGVRMHEKEGIWNPELTFGHLL 121

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI---YEMSFINGILDN-PLV 160
               ++    ++ GG +G G  + N  SS   + IK +G     Y   + N +    P  
Sbjct: 122 TSTNYDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIK-DGETKQCYTQKWNNNMTVCHPPK 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFN---YDTLQHRLRELS-FLNSSVQISLIDKRSP 216
           +T  + + +   +TF+P    F +   +   Y   + R+ + +     + ++    +  P
Sbjct: 181 ITKHSASTSSVSITFIPDWKRFGMNKMDNNIYKIFEKRVWDANICTTPNCKVKFQGEALP 240

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           +                          +     +   R ++ I              + F
Sbjct: 241 KTSFEAYA--------------KMHEGVSEVSSVTTDRWSVCI-----GPSENGLEQVSF 281

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I    GGTH+  + S +   I   + K       K  +     +  F   +   + +
Sbjct: 282 VNGICTTKGGTHVDHVASYIASGIIDEMAK-------KIKLKPQQVKNTFNIFVKATLEN 334

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P FSSQ K +  S       + F +                I +++   S  ++     +
Sbjct: 335 PTFSSQVKSECTSKA-----QDFGSKFEPPKNFVKNALKTGIQEELTALSKFKEMKELKK 389

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPL 453
               RK  +                  K  L + EGDSA   A  G S   R++  + PL
Sbjct: 390 TDGARKSKITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPL 449

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           RGK  NV  A   ++ S+QE   L   LG   G+D  D+++LRY +++IMTDAD DG+HI
Sbjct: 450 RGKCKNVRDASVAQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDGSHI 509

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           + L+L       PSL+  GF+  +  P+   ++G   +    + +   +  N     +I+
Sbjct: 510 KGLILNMIHYFWPSLLKLGFVVSMVTPIIKASKGTQSKSFYTDSAFRSWYGNGQPGWKIK 569

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +       S          A +  K I+D     D   +    I   F+ +   +    
Sbjct: 570 YYKGLGTSTSAE--------AREYFKKIQDLTVKFDMDIMTDKSIVLAFDKKKADDRKTW 621

Query: 634 LASKLAN 640
           L    A 
Sbjct: 622 LLESTAK 628


>gi|237717123|ref|ZP_04547604.1| DNA topoisomerase IV subunit B [Bacteroides sp. D1]
 gi|229443106|gb|EEO48897.1| DNA topoisomerase IV subunit B [Bacteroides sp. D1]
          Length = 449

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 126/473 (26%), Positives = 206/473 (43%), Gaps = 51/473 (10%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----SGLHHMIYEVLDNAIDESLE 58
           DN     Y  D+I+ L  ++ V+ RP MYIG          G++ ++ EV+DN+IDE   
Sbjct: 10  DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
                I +T+  +   +V D GRGIP        I A  +    L+ GGK++ K++K S 
Sbjct: 70  QAGKKIEITVEENLRVSVRDYGRGIPQGKL----IEAVSM----LNTGGKYDSKAFKKSV 121

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GL+GVGV  VNALSS  ++R  R+G +   +F  G L      T +   + GT + F P 
Sbjct: 122 GLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTD--ETQNTEEENGTYIFFEPD 179

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + +F    F  + ++  LR  ++LN+ + I     R           + G+   ++    
Sbjct: 180 NTLFLNYCFKPEFIETMLRNYTYLNTGLAIIYNGHRI--------LSRNGLVDLLNDNMT 231

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
                +   I ++G      I++A      Y E    F N      GGTH S  +  + R
Sbjct: 232 A--TGLYPIIHLKGED----IEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAR 285

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV------ 352
            I  +  K+             D R G  + +++ + +P F SQTK KL S+ +      
Sbjct: 286 TIKEFFNKNMDYT---------DIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMVPGGVT 336

Query: 353 -RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTRRKGVLDIASL 410
               V  F+   +  +L ++   A+ I +K+ ++   R A     +    R    ++ + 
Sbjct: 337 VNKYVGDFIKQEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARERAKKANLHNR 396

Query: 411 PGKLADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
             +       DP      + S +F+ EGDSA GS  + R    QA+  LRGK 
Sbjct: 397 KLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKP 449


>gi|213021678|ref|ZP_03336125.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 205

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 90/208 (43%), Positives = 132/208 (63%), Gaps = 5/208 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDK 213
            F+   L H L+  + L    +  L  K
Sbjct: 178 RFSVSRLMHVLKAKAVLCPGWKSLLKMK 205


>gi|294963332|gb|ADF50153.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 354

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 169/355 (47%), Positives = 243/355 (68%), Gaps = 2/355 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FN 188
           ALS+ L + + R+G I+   F  G+    L + G   + TGT   F+P  +IF+    F+
Sbjct: 1   ALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFD 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YDTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+
Sbjct: 60  YDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPV 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+ 
Sbjct: 120 YIEGEKDGITIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +L
Sbjct: 180 VFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFL 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL+
Sbjct: 240 LENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELY 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           +VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGT
Sbjct: 300 IVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGT 354


>gi|118201784|gb|ABK79705.1| DNA gyrase subunit b [Oceanicola granulosus]
          Length = 357

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 206/357 (57%), Positives = 271/357 (75%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LR+ R G  +   F +G     L V G A   +GTEV FL S+D FS  D++
Sbjct: 1   NALSVWLELRVWRNGKEHVARFEHGETVEHLKVVGDAHGRSGTEVRFLASTDTFSNLDYD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           + TL+ RLREL+FLNS V+I L D R  EP  + +FY+GG++ FV YLDR K  ++  PI
Sbjct: 61  FHTLEKRLRELAFLNSGVRIILEDDRPAEPLHVELFYEGGVKEFVKYLDRSKSAMLPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            ++G RD+I++++AM WND Y+E VL FTNNIPQ+DGGTH++G R+ALTR +T Y  +S 
Sbjct: 121 HVEGMRDDITVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRTVTKYATESG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES V++ L+ W 
Sbjct: 181 IAKREKVNFTGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLVSEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P +AK+IV K+++A+  R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP ++E+F
Sbjct: 241 EENPGQAKMIVSKIVEAAQAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPTQTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QA+LPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRRTQAVLPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|294963342|gb|ADF50158.1| DNA gyrase subunit B [Bacillus thuringiensis]
          Length = 356

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 165/358 (46%), Positives = 248/358 (69%), Gaps = 3/358 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF     
Sbjct: 1   VNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEE 118

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K
Sbjct: 119 PVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    
Sbjct: 179 NNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEK 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE
Sbjct: 239 FLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISE 298

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT 
Sbjct: 299 IYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTN 356


>gi|51571589|emb|CAH18961.1| gyrase B [Corallococcus coralloides]
          Length = 361

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 190/364 (52%), Positives = 254/364 (69%), Gaps = 3/364 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGV+ VN L+ W K+RI+R G ++E  +  G+   P    G   +  GT + F P   I
Sbjct: 1   GVGVTCVNFLAEWFKVRIQRNGKVFEQGYARGVSGGPPTEVG-TTDKRGTMIHFKPDPTI 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
               DFN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV YL++ K 
Sbjct: 60  METVDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGIASFVEYLNKAKS 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG +SALTR + 
Sbjct: 118 ALHDKPVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKSALTRTLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY EK    K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VN
Sbjct: 178 SYAEKGGQWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVN 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D L+++LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLADC  RD
Sbjct: 238 DQLASFLEENPPLAKKVVAKIGDACRARIAARKARETVRRKGVLDGGGLPGKLADCQSRD 297

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P +SEL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITAL
Sbjct: 298 PNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLITAL 357

Query: 482 GTGI 485
           GTGI
Sbjct: 358 GTGI 361


>gi|118201770|gb|ABK79698.1| DNA gyrase subunit b [Loktanella hongkongensis]
          Length = 356

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 210/357 (58%), Positives = 262/357 (73%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R+G  +   F  G     L V G     TGTEV FL S+  FS  D+ 
Sbjct: 1   NALSDWLELRIWRDGKEHVARFERGETVKHLEVVGDTE-QTGTEVRFLASTTTFSNLDYV 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D R  +P    +FY+GG+  FV YLDR K  +M  PI
Sbjct: 60  FETLEKRLRELAFLNSGVRIILEDDRPAQPLHTELFYEGGVREFVKYLDRSKHAVMPEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G +D I +++AM WND +HE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 120 WIEGEKDGIGVEVAMWWNDTFHETVLPFTNNIPQRDGGTHMAGFRGALTRTINAYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ V + LS W 
Sbjct: 180 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVGEKLSEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 EENPNIAKQIVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSEKDPTKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|62944554|gb|AAY22125.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis]
          Length = 348

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 205/349 (58%), Positives = 274/349 (78%), Gaps = 1/349 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS +L+L + R+G  + M F +G+   PL V G A +  GT V F PS++ F + 
Sbjct: 1   SVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLKVVG-ASDKRGTRVRFHPSAETFKIT 59

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +FN++ L+HR REL+FLNS V++ L DKR+   + + +FY+GGI AFV +LDR K  L+ 
Sbjct: 60  EFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVELFYEGGIAAFVKWLDRAKTALIP 119

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+  R+ALTR + +Y +
Sbjct: 120 EPVAIHGDRDDVMIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAFRAALTRTLNNYAD 179

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           KS   KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR  +ES + D ++
Sbjct: 180 KSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPLESLMADKMA 239

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WLEE+P  AK+I++K++DA+  R+AA+RAR+LTRRKGV+DIASLPGKLADC ERDP KS
Sbjct: 240 EWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLADCQERDPTKS 299

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           E+F+VEGDSAGGSAKQGR+R NQAILPL+GKILN ER+R D+MLSS+E+
Sbjct: 300 EIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEV 348


>gi|323455286|gb|EGB11155.1| hypothetical protein AURANDRAFT_22331 [Aureococcus anophagefferens]
          Length = 1228

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 123/608 (20%), Positives = 219/608 (36%), Gaps = 83/608 (13%)

Query: 12  ADSIQILKGLDAVKKRPSMY----------IGDTD------------------------- 36
            ++ Q    L+ +  RP  Y          +G  +                         
Sbjct: 27  EETYQKKTQLEHILLRPDTYSAPAAPETARLGSIEMSTQPMWVLNPDTKRIVRRNVTYAR 86

Query: 37  -GESGLHHMIYEVLDNAIDE-----SLEGYADIITVTLN-MDGSCTVSDNGRGIPTDLHK 89
            G  GL  +  E++ NA D      S+      I V ++    S +V ++G+GIP ++H 
Sbjct: 87  RGVPGLFKIFDEIMVNAADNKQRDPSM----TTIKVDIDVAANSISVGNDGKGIPVEMHG 142

Query: 90  EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYE 147
           E G    E+I   L  G  F+    K +GG +G G  + N  S    +     + G    
Sbjct: 143 EHGCYVPELIFGHLLTGSNFDDNEKKTTGGRNGYGAKLANIFSKKFTVETADSKSGRKLS 202

Query: 148 MSFINGI--LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
            ++ + +     P  ++        T VTF P    F +   + D +    +    + +S
Sbjct: 203 QTWEHNMSGTQGPAKISPHKNKKDFTRVTFEPDLARFKMDRLDDDIVALLSKRAYDVAAS 262

Query: 206 VQIS---LIDKRSPEPREIT-MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                  L  + + E   +        +   +                    R +    +
Sbjct: 263 ASCHGSSLKVELNGERVPVKSFAQYVALHDGLEPPAAL-------------ERVDDRWTV 309

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
            +  +DG     L F N+I    GG+H++ +   +T +    +  +   K   + V    
Sbjct: 310 GVAPSDG-TFQHLSFVNSICTSKGGSHVNYVADQITAK----LAAAVKKKNKGQEVKPAF 364

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            +      +   + +P F SQTKE L + E     +  + D     +E+  +  +++   
Sbjct: 365 IKAHLCVYVDAMIVNPAFDSQTKETLTTKEKAFGSKCVLPDKFLKAIEKSGVVDRVLAWT 424

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
                  +   +  R    +K  L   +             K   L L EGDSA   A  
Sbjct: 425 -----KFKQDEQLKRKGGSKKTRLTGITKLDDANAAGGARGKDCTLILTEGDSAKALAVS 479

Query: 442 GR---SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLR 496
           G     R+   + PL+GK LNV  A    ++ ++E+  ++  LG   G      ++  LR
Sbjct: 480 GLGVVGRDLYGVFPLKGKPLNVREASHAAIMKNEEVQNVVKILGLRFGVTYDEANLKTLR 539

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKD 555
           Y  ++IMTD D DG+HI+ LL+       PSL+   GFL     P+   T     +  + 
Sbjct: 540 YGHLMIMTDQDHDGSHIKGLLINCLHHFWPSLLQIPGFLRCFITPIVKATPAAKSKPAEV 599

Query: 556 EESLEDYL 563
             +L +Y 
Sbjct: 600 FFTLPEYE 607


>gi|294963304|gb|ADF50139.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 364

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 166/363 (45%), Positives = 250/363 (68%), Gaps = 3/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF     
Sbjct: 1   VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETIV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEE 118

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K
Sbjct: 119 PVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    
Sbjct: 179 NNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEK 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE
Sbjct: 239 FLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISE 298

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT + 
Sbjct: 299 IYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNME 358

Query: 487 QDS 489
            D 
Sbjct: 359 GDF 361


>gi|294963298|gb|ADF50136.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 364

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 166/363 (45%), Positives = 249/363 (68%), Gaps = 3/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L++ + REG I+   +  GI    L V G     TGT   F P  +IF     
Sbjct: 1   VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTE-QTGTITRFKPDPEIFQETIV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEE 118

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K
Sbjct: 119 PVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    
Sbjct: 179 NNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEK 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE
Sbjct: 239 FLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISE 298

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT + 
Sbjct: 299 IYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNME 358

Query: 487 QDS 489
            D 
Sbjct: 359 GDF 361


>gi|118201756|gb|ABK79691.1| DNA gyrase subunit b [Antarctobacter heliothermus]
          Length = 357

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 208/357 (58%), Positives = 266/357 (74%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LR+ R G  +   F +G     L V G +  +TGTEV FL S+  FS  D+ 
Sbjct: 1   NALSVWLELRVWRNGKEHFAKFEHGETTEHLRVVGDSHGETGTEVRFLASTGTFSNLDYQ 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  EP +  + Y+GG+  FV YLDR K+ +M  PI
Sbjct: 61  FETLEKRLRELAFLNSGVRILLEDERPAEPMKSELHYEGGVREFVKYLDRSKQAVMDDPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G +D I +++AM WND YHENVL FTNNIPQ+DGGTHL+G R ALTR I  Y ++S 
Sbjct: 121 YMDGEKDGIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRTIQKYAQESG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEVR  VE  +N+ LS W 
Sbjct: 181 IAKREKVNFTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLMNEKLSEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P +AK IV K+++A++ R+AAR+AR+LTRRK  +D++    KL DCSE+D  K+ELF
Sbjct: 241 EENPQQAKGIVGKIVEAALAREAARKARELTRRKTAMDVSFNAAKLKDCSEKDASKTELF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRRTQAILPLRGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|156088413|ref|XP_001611613.1| DNA topoisomerase II [Babesia bovis T2Bo]
 gi|154798867|gb|EDO08045.1| DNA topoisomerase II, putative [Babesia bovis]
          Length = 1437

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 139/728 (19%), Positives = 270/728 (37%), Gaps = 89/728 (12%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES------------------- 39
           M+         Y     Q    L+ +  RP  YIG+T+  +                   
Sbjct: 1   MAAKQKTIEQRY-----QKKSQLEHILLRPDTYIGNTEMLTQQMWVYNQEAKRMLYEPVT 55

Query: 40  ---GLHHMIYEVLDNAIDESLEGYA-----------DIITVTLNMD-GSCTVSDNGRGIP 84
              GL+ +  E+L NA D     +A             I V  N   G+ TV ++G  IP
Sbjct: 56  FIPGLYKIFDEILVNAAD----VHARQQSDPSLTRMTCIKVNFNATTGAITVFNDGEPIP 111

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
            ++HKE  +   E+I   L     ++ +  +++GG +G G  + N  S    +    +  
Sbjct: 112 VEIHKEHNVYVPEMIFGELLTSDNYDDEDGRITGGRNGFGAKLTNIFSKSFSVTCA-DSK 170

Query: 145 IYEM---SFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
            ++     + + +         GS       +VTF+P  + F +   +  TL+  L+ + 
Sbjct: 171 RHKQFAMKWESNMTRVASPAKVGSYHGKDFVKVTFIPDYERFGIPTMDEGTLKVLLKRVY 230

Query: 201 FL--NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
            +   + +++   D+R             GI  F  Y+  + +     P  ++       
Sbjct: 231 DVAGTTGLRVYWNDERL------------GISDFKQYVGLYFE---DDPTVVKVYDKAHR 275

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
            ++ +   DG     + F NNI    GG+H+  +   L   +T+ V+      KD   + 
Sbjct: 276 WEVMVSATDGSGFQQVSFVNNITTLKGGSHVQHVLEPLVTALTNKVKSKN---KDGVELK 332

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
               +      ++ ++ +P F SQTKE L +         ++ +  +          + I
Sbjct: 333 PYQIKNYIFLFVNCQIVNPTFDSQTKETLTTK-PAKFGSKYIMNPKAVAQILKSTLTERI 391

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLP--GKLADCSERDPKKSELFLVEGDSAG 436
           +      +  R      + +   K V  +  +P      +   R  +   L L EGDSA 
Sbjct: 392 LSF----AQGRLNIELKKKMKVTKAVNRLTGIPKLEDANNAGTRHARNCTLILTEGDSAK 447

Query: 437 GSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI-GQDSFDI 492
            S   G S   R+N  + PL+GK+LNV  A + +++ + EI  ++  +G  +  ++    
Sbjct: 448 TSCLAGLSVVGRDNYGVFPLKGKLLNVRDASYKQLVQNAEIQNILKIMGLDVSKKEQTTP 507

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQ 551
           + LRY  I+IMTD D DG+HI+ LL+       P +I   GF+     P+   T+G S+ 
Sbjct: 508 DGLRYGSIMIMTDQDYDGSHIKGLLINLLHYFWPKMIQCRGFIREFVTPIIKATKGDSVL 567

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
                +    ++ + +++     +    G  +  + + +  +        +       + 
Sbjct: 568 SFFTVQDYVRWVQSTNVAGWKIKYYKGLGTSTDKEFKEYFVNIQ------QHLIDFIYED 621

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGV 671
             +   I   FN +   +  +       +         +  +   IN   I         
Sbjct: 622 NADDDSIDLAFNKKRVDDRKL-WMQSYEHGTTVDHSIKKLRYTDFINKELIQFSIYDTER 680

Query: 672 QEQFVLEG 679
               V++G
Sbjct: 681 SIPSVVDG 688


>gi|190148878|gb|ACE63414.1| DNA gyrase B subunit [Pseudonocardia sp. W101]
          Length = 388

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 174/391 (44%), Positives = 246/391 (62%), Gaps = 18/391 (4%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ L + I  EG ++   + + +   PL   G     TGT VTF    D
Sbjct: 1   HGVGVSVVNALSTALDVEIHTEGKVWRQHYAHSVP-GPLRK-GEDTTKTGTTVTFWADPD 58

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------EPREITMFY 225
           IF    +N +T++ RL+E++FLN  + I L D+R+                + +E T  Y
Sbjct: 59  IFETTTYNIETIRRRLQEMAFLNKGLTIVLRDERNGHPAEEEEPDAEGYVAKVKEYTFCY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             G+E FV++L++ K P+ +  +   G  D  ++++AM+WN GY E+V  F N I   +G
Sbjct: 119 PNGLEDFVAHLNKSKDPIHKKLLSYTGEGDGHAVEVAMQWNSGYTESVYTFANTINTHEG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH  G RSALT  +  Y  +    K  + ++ GDD REG  +++S+K+ +P+F  QTK 
Sbjct: 179 GTHEEGFRSALTTTVNRYAREKKLLKDKEPALSGDDIREGLAAIVSVKVKEPQFEGQTKT 238

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL ++EV+S V+   N+ L+ W E +P EAK IV K + ++  R AAR+AR+L RRK   
Sbjct: 239 KLGNTEVKSFVQRVSNEWLADWFERNPTEAKTIVNKAVSSAQARIAARKARELVRRKSAG 298

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DI  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI+NVE+AR 
Sbjct: 299 DIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARL 358

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           D++L + E+ ++ITALGTGI  D FD++KLR
Sbjct: 359 DRVLKNTEVQSIITALGTGI-HDEFDLSKLR 388


>gi|324962642|gb|ADY62423.1| gyrase subunit B [Frankia sp. Cg70.9]
          Length = 360

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 154/359 (42%), Positives = 210/359 (58%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVTDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I  +G+++   ++    D PL  TG+      + VTF     +F   +
Sbjct: 61  VVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTGTS-VTFWADPTMFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y+TL  RL+E++FLN  + I+L+D+R  E   +T  Y  G+  FV +L+  K  + +S
Sbjct: 120 YKYETLSRRLQEMAFLNKGLSITLVDERDEERVAVTYKYANGLVDFVGHLNATKDTVHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I   LAM+ N GY E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLESKGVGIEAQLAMQCNGGYTESVYTFANTIHTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD RE  T+++S+K+  P+F  QTK KL ++E +  V+  
Sbjct: 240 QNLLKPVKAGAKNSDERLSGDDIREDLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARAIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|15551707|emb|CAC69411.1| DNA gyrase B subunit [Plesiomonas shigelloides]
          Length = 322

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 180/325 (55%), Positives = 237/325 (72%), Gaps = 3/325 (0%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++   +  G    PL V G   N
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSDKLELMIRREGKVHTQEYHLGEPVAPLAVVGDT-N 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT+V F PS  IF+  +F Y+ L  RLRELSFLNS V I L+DKR+ +       Y+G
Sbjct: 60  ATGTQVRFWPSPTIFTNIEFQYEILAKRLRELSFLNSGVSIHLLDKRNDKQ--DHFKYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GI+AFV YL+R+K P+          +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 118 GIQAFVEYLNRNKTPIHDKVCYFSSEKDGIGVEVALQWNDGFQENLYCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+A+TR + +Y+EK    KK K ++ GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 178 HLAGFRAAMTRTLNAYIEKEGLPKKAKINMTGDDPREGLTAVISVKVPDPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV+  VES + + L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+
Sbjct: 238 VSSEVKPAVESLMGERLQEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDL 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEG 432
             LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 GGLPGKLADCQERDPALSELYLVEG 322


>gi|118201826|gb|ABK79726.1| DNA gyrase subunit b [Sulfitobacter pontiacus]
          Length = 356

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 214/357 (59%), Positives = 267/357 (74%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI REG  +   F  G     L V G     TGTEV F+ S++ FS  D++
Sbjct: 1   NALSDWLELRIWREGKEHVARFEGGFTTKHLEVVGPTE-RTGTEVRFMASTETFSNLDYS 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  EP    +FY+GG++ FV YLDR K  +M  PI
Sbjct: 60  FETLEKRLRELAFLNSGVRIILTDERPAEPLRTELFYEGGVKEFVKYLDRSKTSVMPEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH +G R ALTR I +Y + S 
Sbjct: 120 FITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHTAGFRGALTRTINNYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ L+ W 
Sbjct: 180 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLAEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AKI+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 EENPQIAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|6729170|dbj|BAA89718.1| DNA gyrase subunit B [Actinoplanes philippinensis]
          Length = 396

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 175/398 (43%), Positives = 261/398 (65%), Gaps = 12/398 (3%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           +YKVSGGLHGVGVSVVNALS+ + + I+++G  +   +   I    L V G   +  G+ 
Sbjct: 3   AYKVSGGLHGVGVSVVNALSTRMAVAIQKDGFWWRQKYDYSIP-GEL-VKGEPTDKLGST 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYK 226
           V F P  DIF   +F+Y T+  RL+E++FLN ++ I+  D+R      + EPR +T  Y+
Sbjct: 61  VQFWPDPDIFETVEFDYQTIYRRLQEMAFLNRALTINYTDERAEAADENGEPRRVTFMYE 120

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            GI  FV +L+  K  + ++ I+ +   ++  + +++AM+WN+ Y E+V  F N I   +
Sbjct: 121 DGIADFVRHLNATKSAIHKTVIQFEAEDNDAGMGVEVAMQWNESYGESVYTFANRINTHE 180

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH  G R+ALT  +  Y  +    K   + + G+D REG  +++S+ + +P+F  QTK
Sbjct: 181 GGTHEEGFRAALTTIVNKYGIEKKFLK-GDQKLSGEDIREGLAAIISVTLREPQFEGQTK 239

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +++++S V+   N+ L+ W + +P +AK+I+ K   A+  R AA++AR L RRK +
Sbjct: 240 TKLGNTDMKSFVQKVANEQLADWFDRNPADAKLIITKADQAARARIAAQQARKLARRKSL 299

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+  S+PGKLADC   DP+++ELF+VEGDSAGGSAK GR    QAILP+RGKILNVE+AR
Sbjct: 300 LESGSMPGKLADCQSTDPRETELFIVEGDSAGGSAKSGRESRIQAILPIRGKILNVEKAR 359

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            D++L + E+  LITA+GTGI  D FDI+KLRYHKII+
Sbjct: 360 IDRVLKNNEVQALITAMGTGI-HDEFDISKLRYHKIIL 396


>gi|295979491|dbj|BAJ07418.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979493|dbj|BAJ07419.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979495|dbj|BAJ07420.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979497|dbj|BAJ07421.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979503|dbj|BAJ07424.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979505|dbj|BAJ07425.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979507|dbj|BAJ07426.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979509|dbj|BAJ07427.1| DNA gyrase subunit B [Planktothrix agardhii]
          Length = 352

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 157/352 (44%), Positives = 218/352 (61%), Gaps = 7/352 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I +  N +GS TV+D+GRGIP D H + G SA E ++T LHAGGKF    YKVS
Sbjct: 1   AGYCTHIEIDFNANGSVTVTDDGRGIPVDTHSKTGKSALETVLTVLHAGGKFGGGGYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL++ + R+   Y   F  G     L         TGT V+FLP
Sbjct: 61  GGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPATELTSKPIKEARTGTSVSFLP 120

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEA 231
            + IF+   +F+ DT+  RLREL++LN+ V+I+L D          PR  T  Y+GGI  
Sbjct: 121 DTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRLELLNRENPRIETYCYEGGIRE 180

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +++Y++  K+PL +  I   G R N+ I++A++W  D Y + VL F NNI   DGGTHL 
Sbjct: 181 YIAYMNNDKQPLHEDIIYTCGERSNVQIEVALQWCTDAYSDTVLGFANNIRTIDGGTHLE 240

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GL++ LTR + +   K    K+ + ++ G++ REG T+V+S K+PDP F  QTK +L + 
Sbjct: 241 GLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAVISAKVPDPEFEGQTKTRLGNP 300

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           EVR +V+S V + L+ +LE +P  A  I++K + A    +AARRARDL RRK
Sbjct: 301 EVRGIVDSLVGEALTEYLEFNPGIADAIIEKAIQAFKAAEAARRARDLVRRK 352


>gi|119226162|dbj|BAF41060.1| DNA gyrase subunit B [Tsukamurella paurometabola]
          Length = 428

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 172/429 (40%), Positives = 247/429 (57%), Gaps = 38/429 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI----NGILDNPLVVTGSAG 166
             +Y VSGGLHGVG+SVVNALSS +++ I  +G  ++ +F             ++ G   
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRVEVEIDVDGFHWQQNFHWDDAKRDSVAEDLIKGEPT 60

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------- 216
             TGT V F     +F+    ++++T+  RL+E++FLN  + I+L D+R           
Sbjct: 61  TRTGTTVRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAIEVPDEDI 120

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGS 253
                                + RE    Y  G+  +V +++    K P+  S I  +G 
Sbjct: 121 TEEAPSAHEEDVAAALAEVAPKKRERIFHYPDGLVDYVKHINARTSKSPIHASIISFEGK 180

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                I++AM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y +     K+ 
Sbjct: 181 EKGHEIEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLVKEK 240

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              + GDD REG  +V+S+K+ +P+F  QTK KL ++EV+S V+    + L  W + +P 
Sbjct: 241 DGELSGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCREQLQFWFDSNPA 300

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AK IV+K   ++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGD
Sbjct: 301 DAKTIVQKAAASAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIVEGD 360

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAK GR    QAILP+RGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI 
Sbjct: 361 SAGGSAKSGRDSMYQAILPIRGKIINVEKARIDKVLKNTEVQSIITAFGTGI-HDEFDIA 419

Query: 494 KLRYHKIII 502
           KLRY KI++
Sbjct: 420 KLRYKKIVL 428


>gi|324962654|gb|ADY62429.1| gyrase subunit B [Frankia sp. HrI1]
          Length = 360

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 158/359 (44%), Positives = 214/359 (59%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           +L  DG   V+DNGRGIP   H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   SLLADGGVRVTDNGRGIPVGEHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+++   ++      PL V       TGT VTF     IF   +
Sbjct: 61  VVNALSTKLDVEIQVDGHVWFQPYVGTRPAAPL-VKTGTTKKTGTSVTFWADPTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + ++TL  RL+E++FLN  + I+LID+R  E  E+T  Y  G+  FV++L+  K  + +S
Sbjct: 120 YKFETLSRRLQEMAFLNKGLSITLIDERPEERLEVTYKYTNGLVDFVAHLNATKDAIHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I  +LAM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLESKGIGIEAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +  V+  
Sbjct: 240 QNLLKPVKAGSKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARSIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|211927057|dbj|BAG82781.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 181/424 (42%), Positives = 252/424 (59%), Gaps = 35/424 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++L IKR+G+I+   + +     PL+  G       
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVQLEIKRDGHIWTQEYTDATP-GPLIKVGETTGTG- 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID------------------ 212
           T V F P   IF   +FN +T+  RL+E++FLN  + ++L D                  
Sbjct: 59  TTVRFWPDPTIFETTEFNAETVARRLQEMAFLNKGLTMTLTDDRISVEDAVVEATMDVDG 118

Query: 213 --------------KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                         ++    R  T  Y  G+  ++ +L+R K P+ Q+ +          
Sbjct: 119 PEQAETIKSEEEKAEQVVTVRTRTYHYPDGLVDYIKHLNRTKTPIHQTVVGFDVKGTGHE 178

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + 
Sbjct: 179 VEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLVKEKDGKLS 238

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P EAKII
Sbjct: 239 GDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFEANPAEAKII 298

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V+K +D++  R AARRAR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGS
Sbjct: 299 VRKAVDSAQARLAARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGS 358

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AK GR   +QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYH
Sbjct: 359 AKSGRDSMHQAILPIRGKIINVEKARIDRVLKNVEVQSIITAFGTGI-HDEFDLAKLRYH 417

Query: 499 KIII 502
           KI++
Sbjct: 418 KIVL 421


>gi|324962690|gb|ADY62447.1| gyrase subunit B [Frankia sp. NRRLB-16406]
          Length = 360

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 157/359 (43%), Positives = 214/359 (59%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           +L  DG+  V DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   SLLADGAVRVVDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+++   ++      PL V       TGT VTF     IF   +
Sbjct: 61  VVNALSTKLDVEIQVDGHVWFQPYVATRPAAPL-VKTGTTKKTGTSVTFWADPTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + ++TL  RL+E++FLN  + I+LID+R  E  E+T  Y  G+  FV++L+  K  + +S
Sbjct: 120 YKFETLSRRLQEMAFLNKGLSITLIDERPEERLEVTYKYSNGLVDFVAHLNATKDAIHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I  +LAM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLESKGVGIEAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD REG  +++S+K+  P+F  QTK KL ++E +  V+  
Sbjct: 240 QNLLKPVKAGAKSGDERLSGDDIREGLAAIISVKLAQPQFEGQTKTKLRNTEAKKFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARAIVSKSLDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|161339260|gb|ABX64381.1| GyrB [Gordonia amicalis]
 gi|161339276|gb|ABX64389.1| GyrB [Gordonia amicalis]
 gi|161339278|gb|ABX64390.1| GyrB [Gordonia amicalis]
 gi|161339280|gb|ABX64391.1| GyrB [Gordonia amicalis]
          Length = 408

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 170/410 (41%), Positives = 239/410 (58%), Gaps = 37/410 (9%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GDA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 217 --------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 NGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 SAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 408


>gi|294963326|gb|ADF50150.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 364

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 166/363 (45%), Positives = 250/363 (68%), Gaps = 3/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF     
Sbjct: 1   VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETIV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEE 118

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K
Sbjct: 119 PVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    
Sbjct: 179 NNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEK 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE
Sbjct: 239 FLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISE 298

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT + 
Sbjct: 299 IYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNMD 358

Query: 487 QDS 489
            D 
Sbjct: 359 GDF 361


>gi|207107906|dbj|BAG71965.1| DNA gyrase subunit B [Gordonia araii]
          Length = 408

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 171/411 (41%), Positives = 239/411 (58%), Gaps = 35/411 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I R+G ++   +   +    L+  G     TGT   F P  DIF 
Sbjct: 1   GISVVNALSTRVELEIARDGFVWTQDYERAVP--GLLKKGEPTKRTGTTTRFWPDGDIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI---------------------- 221
              F+ +T+  RL+E++FLN  + I+L D R  +   I                      
Sbjct: 59  TTTFSAETVARRLQEMAFLNKGLTITLTDNRISDDEAIAEADLDGDGTDKAETVKSEEEK 118

Query: 222 ----------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
                     T  Y  G+  ++ +L+R K P+  S I   G  +   +++AM+WN GY E
Sbjct: 119 KAQAAVVRTRTYHYPDGLVDYIKHLNRTKTPIHSSVIGFSGKGEGHEVEIAMQWNSGYAE 178

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S
Sbjct: 179 SVHTFANTINTHEGGTHEEGFRAALTATVNKYAADKKLVKEKDGKLTGDDIREGLAAVIS 238

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P EAK I++K +D++  R A
Sbjct: 239 VKVSDPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFEANPAEAKTIIRKAVDSAQARIA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAIL
Sbjct: 299 ARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           P+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 PIRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIKKLRYHKIVL 408


>gi|211927107|dbj|BAG82806.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 428

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 172/429 (40%), Positives = 247/429 (57%), Gaps = 38/429 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF----INGILDNPLVVTGSAG 166
             +Y VSGGLHGVG+SVVNALSS +++ I  +G  ++ +F             ++ G   
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRVEVEIDVDGFHWQQNFHWDDKKRDSVAEDLIKGEPT 60

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------- 216
             TGT V F     +F+    ++++T+  RL+E++FLN  + I+L D+R           
Sbjct: 61  ERTGTTVRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAVEVPDEAI 120

Query: 217 ---------------------EPREITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGS 253
                                + RE    Y  G+  +V +++    K P+  S I  +G 
Sbjct: 121 TEEAPSAHEDDVAAALAEVAPKKRERIFHYPDGLVDYVKHINARTSKSPIHGSIISFEGK 180

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                I++AM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y +     K+ 
Sbjct: 181 EKGHEIEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLVKEK 240

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              + GDD REG  +V+S+K+ +P+F  QTK KL ++EV+S V+    + L  W + +P 
Sbjct: 241 DGELSGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCREQLQFWFDSNPA 300

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AK IV+K   ++  R AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGD
Sbjct: 301 DAKTIVQKAAASAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIVEGD 360

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGGSAK GR    QAILP+RGKI+NVE+AR DK+L + E+ ++ITA GTGI  D FDI 
Sbjct: 361 SAGGSAKSGRDSMYQAILPIRGKIINVEKARIDKVLKNTEVQSIITAFGTGI-HDEFDIA 419

Query: 494 KLRYHKIII 502
           KLRY KI++
Sbjct: 420 KLRYKKIVL 428


>gi|53988807|gb|AAV28318.1| DNA gyrase subunit B [Listeria welshimeri]
          Length = 217

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 108/219 (49%), Positives = 142/219 (64%), Gaps = 3/219 (1%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNM 70
           + D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAIDE+L G+   I +T+  
Sbjct: 1   NEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAIDEALAGFCTEIEITIES 59

Query: 71  DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNA 130
           D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    YKVSGGLHGVG SVVNA
Sbjct: 60  DNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVGASVVNA 119

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L++ + REG  Y   F  G +   + V G   +  GT V F P   IF+    F++
Sbjct: 120 LSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVHFTPDPQIFTETTEFDF 178

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           DTL+ R REL+FLN  + IS+ DKR          Y+GG
Sbjct: 179 DTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGG 217


>gi|161339232|gb|ABX64367.1| GyrB [Gordonia amicalis]
 gi|161339238|gb|ABX64370.1| GyrB [Gordonia amicalis]
 gi|161339246|gb|ABX64374.1| GyrB [Gordonia amicalis]
 gi|161339248|gb|ABX64375.1| GyrB [Gordonia amicalis]
 gi|161339250|gb|ABX64376.1| GyrB [Gordonia amicalis]
 gi|161339262|gb|ABX64382.1| GyrB [Gordonia amicalis]
 gi|161339282|gb|ABX64392.1| GyrB [Gordonia amicalis]
          Length = 408

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 170/410 (41%), Positives = 238/410 (58%), Gaps = 37/410 (9%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GDA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V F P   IF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 217 --------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 NGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 SAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 408


>gi|295979501|dbj|BAJ07423.1| DNA gyrase subunit B [Planktothrix agardhii]
          Length = 352

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 156/352 (44%), Positives = 217/352 (61%), Gaps = 7/352 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I +  N +GS TV+D+GRGIP D H + G SA E ++T LHAGGKF    YKVS
Sbjct: 1   AGYCTHIEIDFNANGSVTVTDDGRGIPVDTHSKTGKSALETVLTVLHAGGKFGGGGYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL++ + R+   Y   F  G     L         TGT V+FLP
Sbjct: 61  GGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPATELTSKPIKEARTGTSVSFLP 120

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEA 231
            + IF+   +F+ DT+  RLREL++LN+ V+I+L D           R  T  Y+GGI  
Sbjct: 121 DTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRLELLNRENSRIETYCYEGGIRE 180

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +++Y++  K+PL +  I   G R N+ I++A++W  D Y + VL F NNI   DGGTHL 
Sbjct: 181 YIAYMNNDKQPLHEDIIYTCGERSNVQIEVALQWCTDAYSDTVLGFANNIRTIDGGTHLE 240

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GL++ LTR + +   K    K+ + ++ G++ REG T+V+S K+PDP F  QTK +L + 
Sbjct: 241 GLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAVISAKVPDPEFEGQTKTRLGNP 300

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           EVR +V+S V + L+ +LE +P  A  I++K + A    +AARRARDL RRK
Sbjct: 301 EVRGIVDSLVGEALTEYLEFNPGIADAIIEKAIQAFKAAEAARRARDLVRRK 352


>gi|188037425|gb|ACD46328.1| DNA gyrase subunit B [Providencia burhodogranariea]
 gi|188037469|gb|ACD46348.1| DNA gyrase subunit B [Providencia burhodogranariea]
          Length = 270

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 154/273 (56%), Positives = 195/273 (71%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++
Sbjct: 1   IHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSS 205
           E  + +G+    L V G   + TGT V F PS D F    +F YD L  RLRELSFLNS 
Sbjct: 61  EQIYSHGVPQGSLTVVGET-DQTGTYVRFWPSFDTFKTVTEFEYDILAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I LIDKR  +       Y+GGI+AFV YL R+K P+  S       +D I ++++M+W
Sbjct: 120 VSIRLIDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTVKDGIGVEISMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV CFTNNIPQ+DGG HL+G R+A+TR + +Y++K    KK K S  GDD REG
Sbjct: 178 NDGFQENVYCFTNNIPQRDGGAHLAGFRAAMTRTLNNYMDKEGYHKKSKVSATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|33146000|emb|CAD57641.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 355

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 211/357 (59%), Positives = 272/357 (76%), Gaps = 3/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  + L I R G I+   + +G    PL V G   + TGTE+ F PS + F+  +F+
Sbjct: 1   NALSKQVTLTIHRGGKIHTQRYCHGEPQAPLAVVGDT-DKTGTEIRFWPSEETFTNIEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI+AFV +L+ +K P++Q   
Sbjct: 60  YDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGIQAFVEHLNTNKTPIIQKIF 118

Query: 249 RIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+G R+ALTR + S+++K 
Sbjct: 119 HFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRAALTRTLNSFMDKE 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +
Sbjct: 179 GFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLSEF 238

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A LPGKLADC E+DP +SEL
Sbjct: 239 LIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQEKDPAQSEL 298

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           ++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG G
Sbjct: 299 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 355


>gi|15551711|emb|CAC69408.1| DNA gyrase B subunit [Providencia alcalifaciens]
          Length = 323

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 187/326 (57%), Positives = 239/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G    PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-D 59

Query: 168 DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS D F  V +F YD L  RLRELSFLNS V I LIDKR  +       Y+
Sbjct: 60  QTGTRVRFWPSMDTFKGVTEFEYDILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL R+K P+  S       +D I ++++M+WNDG+ ENV CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLSRNKTPIHPSVFYFSTEKDGIGVEVSMQWNDGFQENVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTKEK
Sbjct: 178 THLAGFRAAMTRTLNNYMEKEGYSKKTKVSATGDDAREGLIAVISVKVPDPKFSSQTKEK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|38224341|gb|AAR14131.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp. necrophorum]
          Length = 403

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 165/403 (40%), Positives = 241/403 (59%), Gaps = 4/403 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGND 168
             +YKVSGGLHGVG+SVVNALS W ++++KREGN+Y   ++ G     + +      G  
Sbjct: 2   NDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGET 61

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT VTF P  +IF    F Y+ LQHRL+EL++LN  ++I+L+D R+   ++ +   +GG
Sbjct: 62  TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQSEGG 121

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I  F+  + R  + L+   I I+G  + + +D+A  +  G  E +  F NNI    G   
Sbjct: 122 ISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEVIYFFCNNIQYYRGRLS 181

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG-FTSVLSIKMPDPRFSSQTKEKL 347
              + +   + +   +EK+   +     +            +   K  +     QTK KL
Sbjct: 182 CDWISNLFNKGLLMILEKAGIFEGKGWKITRRRTFGKELGLLFRSKFHNRNLEGQTKTKL 241

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SEV  +V + ++  L  +LE++P + K+I++K+L +   R+AA+RAR+   RK VL++
Sbjct: 242 GNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSVLEV 301

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            SLPGKLADCS + P++ E+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+A   K
Sbjct: 302 GSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHK 361

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
            L S EI  ++TA GT IG++S         KII+MTDADVDG
Sbjct: 362 ALESDEIRAMVTAFGTNIGEESLIGKIEI-GKIILMTDADVDG 403


>gi|62944552|gb|AAY22124.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 348

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 205/349 (58%), Positives = 274/349 (78%), Gaps = 1/349 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS +L+L + R+G  + M F +G+   PL V G A +  GT V F PS++ F + 
Sbjct: 1   SVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRFHPSAETFKIT 59

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +FN++ L+HR REL+FLNS V++ L DKR+   + + +FY+GGI AFV +LDR K  L+ 
Sbjct: 60  EFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVELFYEGGIAAFVKWLDRAKTALIP 119

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+  R+ALTR + +Y +
Sbjct: 120 EPVAIHGDRDDVMIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAFRAALTRTLNNYAD 179

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           KS   KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR  +ES + D ++
Sbjct: 180 KSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPLESLMADKMA 239

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WLEE+P  AK+I++K++DA+  R+AA+RAR+LTRRKGV+DIASLPGKLADC ERDP KS
Sbjct: 240 EWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLADCQERDPTKS 299

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           E+F+VEGDSAGGSAKQGR+R NQAILPL+GKILN ER+R D+MLSS+E+
Sbjct: 300 EIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEV 348


>gi|146320607|ref|YP_001200318.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 98HAH33]
 gi|145691413|gb|ABP91918.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 98HAH33]
          Length = 178

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/159 (55%), Positives = 115/159 (72%), Gaps = 3/159 (1%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           M+    + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHHM++E++DNA+DE+L G
Sbjct: 1   MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           + D I VT+N DGS +VSD GRG+P  +H   G    EVI T LHAGGKF Q  YK SGG
Sbjct: 60  FGDRIDVTINKDGSLSVSDRGRGMPVGMHA-TGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
           LHGVG SVVNALSSWL++ I R+G +Y+  F  G   + 
Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGWKASH 157


>gi|19909749|dbj|BAB87070.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909751|dbj|BAB87071.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909753|dbj|BAB87072.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909755|dbj|BAB87073.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909757|dbj|BAB87074.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909759|dbj|BAB87075.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909765|dbj|BAB87078.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909767|dbj|BAB87079.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909769|dbj|BAB87080.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909771|dbj|BAB87081.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909773|dbj|BAB87082.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909775|dbj|BAB87083.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909777|dbj|BAB87084.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909779|dbj|BAB87085.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909781|dbj|BAB87086.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909783|dbj|BAB87087.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909785|dbj|BAB87088.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979513|dbj|BAJ07429.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979515|dbj|BAJ07430.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979527|dbj|BAJ07436.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979529|dbj|BAJ07437.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979531|dbj|BAJ07438.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979533|dbj|BAJ07439.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979535|dbj|BAJ07440.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979537|dbj|BAJ07441.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979539|dbj|BAJ07442.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979541|dbj|BAJ07443.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979543|dbj|BAJ07444.1| DNA gyrase subunit B [Planktothrix rubescens]
          Length = 352

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 158/352 (44%), Positives = 218/352 (61%), Gaps = 7/352 (1%)

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            GY   I +  N +GS TV+D+GRGIP D H + G SA E ++T LHAGGKF    YKVS
Sbjct: 1   AGYCTHIEIDFNANGSVTVTDDGRGIPVDTHSKTGKSALETVLTVLHAGGKFGGGGYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS WL++ + R+   Y   F  G     L         TGT V FLP
Sbjct: 61  GGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPATELTSKPIKEARTGTSVCFLP 120

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEA 231
            + IF+   +F+ DT+  RLREL++LN+ V+I+L D      R   PR  T  Y+GGI  
Sbjct: 121 DTVIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRLELLRRETPRIETYRYEGGIRE 180

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290
           +++Y++  K+PL +  I   G R N+ I++A++W  D Y + VL F NNI   DGGTHL 
Sbjct: 181 YIAYMNNDKQPLHEDIIYTCGERSNVQIEVALQWCTDAYSDTVLGFANNIRTIDGGTHLE 240

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           GL++ LTR + +   K    K+ + ++ G++ REG T+V+S K+PDP F  QTK +L + 
Sbjct: 241 GLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAVISAKVPDPEFEGQTKTRLGNP 300

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           EVR +V+S V + L+ +LE +P  A  I++K + A    +AARRARDL RRK
Sbjct: 301 EVRGIVDSLVGEALTEYLEFNPGIADAIIEKAIQAFKAAEAARRARDLVRRK 352


>gi|112732542|dbj|BAF03048.1| DNA gyrase subunit B [Pasteurella pneumotropica]
          Length = 354

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 207/357 (57%), Positives = 266/357 (74%), Gaps = 3/357 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SV NALS  L+L I+R+G+++E  +  G    PL + G     TGT V F PS DIF++ 
Sbjct: 1   SVDNALSDKLQLTIRRQGHVHEQFYHLGEPQMPLTIIGDTE-ATGTSVRFWPSPDIFAIT 59

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+Y  L  RLRELSFLNS V I L+DKR          Y+GGI+AFV YL+++K P+  
Sbjct: 60  TFDYKILAKRLRELSFLNSGVSIRLVDKRDGTE--DHFHYEGGIQAFVEYLNKNKNPIHP 117

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P      +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + SY+E
Sbjct: 118 KPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSLNSYME 177

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
                KK+K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ + 
Sbjct: 178 NEGLLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKMQ 237

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  S
Sbjct: 238 EYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS 297

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           EL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG
Sbjct: 298 ELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALG 354


>gi|118201820|gb|ABK79723.1| DNA gyrase subunit b [Sulfitobacter delicatus]
          Length = 356

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 215/357 (60%), Positives = 270/357 (75%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI REG  +   F  G     L V G   + TGTEV F+ S+D FS ++++
Sbjct: 1   NALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGET-DRTGTEVRFMASTDTFSNREYS 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  EP    ++Y GG++ FV YLDRHK  +M  PI
Sbjct: 60  FETLEKRLRELAFLNSGVRIILTDERPVEPLRTELYYDGGVKEFVKYLDRHKTAVMPEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G RD+I I++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR I  Y + S 
Sbjct: 120 FITGERDDIGIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRTINGYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES VN+ L+ W 
Sbjct: 180 IAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLVNEKLAEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAK IV K+++A+  R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 EENPNEAKQIVGKIVEAAQAREAARKARELTRRKSAMDVNFLAGKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|51571603|emb|CAH18968.1| gyrase B [Corallococcus coralloides]
          Length = 373

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 189/368 (51%), Positives = 258/368 (70%), Gaps = 3/368 (0%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            VN LS W K+RI+R G +YE S+  G+ +      G   +  GT + F P + +    D
Sbjct: 9   CVNFLSEWFKVRIQRAGKVYEQSYARGVANGAPQEVG-TTDKRGTMIHFKPDTQVMETVD 67

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN++TL  RLREL+FLN+ + I++ D+R+ +  +    ++GGI +FV YL++ K+ L   
Sbjct: 68  FNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFEGGISSFVEYLNKAKEALHDK 125

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + SY EK
Sbjct: 126 PVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAALTRTLNSYAEK 185

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VND L++
Sbjct: 186 GSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGLVEQMVNDQLAS 245

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLADC  RDP +SE
Sbjct: 246 FLEENPPLAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQSRDPHESE 305

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITALGTGIG
Sbjct: 306 LYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLITALGTGIG 365

Query: 487 QDSFDINK 494
            + +D  K
Sbjct: 366 AEDYDPEK 373


>gi|148762365|dbj|BAF63884.1| DNA gyrase subunit B [Halobacillus kuroshimensis]
          Length = 325

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 152/328 (46%), Positives = 222/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVG SVVNALS+ L++ + R+G I+  S+  G+ +  L V G   + TGT +
Sbjct: 1   YKVSGGLHGVGASVVNALSTKLEVFVHRDGQIHYQSYKRGVPEEDLKVVGET-DQTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF     + ++ L +RLREL+FLN  + I++ DKR+ E       Y+GGI ++
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDEDPVDYY-YEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ +      I+G +D ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTREAIH-DAFFIEGEQDEISIEIAMQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNSMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V ++  ++  S +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDARFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|89512210|gb|ABD74001.1| DNA topoisomerase IV subunit beta [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 179

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 115/183 (62%), Gaps = 8/183 (4%)

Query: 1   MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58
           M+         Y A +I +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ 
Sbjct: 1   MAAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKV 116
           GYAD + V +  DGS  V+DNGRGIP  +H   G    +V+MT+LHAGGKF      Y V
Sbjct: 60  GYADRVDVRILDDGSVEVADNGRGIPVAIHA-TGAPTVDVVMTQLHAGGKFGGENSGYNV 118

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ L++ I R+G  +   + + +    L   G     TGT + F 
Sbjct: 119 SGGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVP-GTLKQ-GEVTKRTGTTIRFW 176

Query: 177 PSS 179
              
Sbjct: 177 ADP 179


>gi|161339244|gb|ABX64373.1| GyrB [Gordonia sp. CC-MJ-6b]
 gi|161339256|gb|ABX64379.1| GyrB [Gordonia sp. CC-MJ-19]
          Length = 408

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 170/410 (41%), Positives = 238/410 (58%), Gaps = 37/410 (9%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYTYAKP-GALEQ-GEA 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------- 216
              TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVETPGDA 118

Query: 217 --------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 NGDEEAPTTEVAEVVQTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       
Sbjct: 179 SAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 408


>gi|311977868|ref|YP_003986988.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
 gi|76363498|sp|Q5UQE6|TOP2_MIMIV RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|55417096|gb|AAV50746.1| topoisomerase II [Acanthamoeba polyphaga mimivirus]
 gi|308204860|gb|ADO18661.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
          Length = 1263

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 138/635 (21%), Positives = 239/635 (37%), Gaps = 74/635 (11%)

Query: 22  DAVKKRPSMYIGDTDGES--------------------------GLHHMIYEVLDNAIDE 55
           + +   P  YIG  + ++                          GL+ +  EV+ NA D 
Sbjct: 25  EHILHSPDTYIGSIEEKTCNMWIFNESAGEDDAKIIFKEITYVPGLYKIYDEVIVNAAD- 83

Query: 56  SLEGY------ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
               +       +II V ++   G  +V +NG GI   +HKE  I    +I   L     
Sbjct: 84  ----HNKRCQTCNIIKVDIDQKTGQISVWNNGDGIDVAIHKEHNIWVPSMIFGELLTSTN 139

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGSAG 166
           +++   K  GG +G G  + N  S    +       G  +   F N + D       S  
Sbjct: 140 YDKNEEKTVGGKNGFGAKLANIYSVEFTIETVDANKGKKFFQRFTNNMYDKEEPKISSFK 199

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
             + T++TF+P    F ++  + DT    + R+ +L+   +  ++   DK+  +      
Sbjct: 200 KSSYTKITFIPDFKKFGLKCLDDDTLALFKKRVFDLAMTTN-AKVYFNDKQIVQNNFKKY 258

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
                 E     +                 R  + +       D      + F N+I   
Sbjct: 259 VGLYFPEGSQHKVVIDDTTH---------ERWKVGVIYD--PTDQLEHQNISFVNSICTS 307

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            GGTH+  +   +   + + + K   + + K ++     +E     +   + +P F +QT
Sbjct: 308 RGGTHVEQVVGQIVNGLKTAIVKKAKNVQIKPAM----IKENLIFFVDATIVNPDFDTQT 363

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE L         +  V +     + +  +  +II       +  R+ A  ++   + +G
Sbjct: 364 KEYLTKKAANFGSKFEVTEKFIKGVIKTGVCDQIIAN-----AKAREEANLSKTDGKGRG 418

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNV 460
            +    L         ++  K  L L EGDSA   A  G +   R+   + PLRGK+LNV
Sbjct: 419 PVRYEKLY-NAHKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLRGKLLNV 477

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             A   K+  ++EI  +   +G   G+   D+  LRY  I+I+ D DVDG HI+ L++ F
Sbjct: 478 RDASPKKIADNEEITAIKKIVGLEQGKVYDDLKGLRYGSIMILADQDVDGYHIKGLIMNF 537

Query: 521 FFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
                PSL+ + GF+     PL   T+GK        + +  +   QS  E  +   D K
Sbjct: 538 IHCFWPSLVKYEGFIQSFATPLLKATKGKGK-----TKQVVAFTSPQSFEEWKKENNDGK 592

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           G   K        D  +  +   D      K F E
Sbjct: 593 GWSIKYYKGLGTSDPAEAQECFADLNDKLVKYFWE 627


>gi|148762393|dbj|BAF63898.1| DNA gyrase subunit B [Halobacillus sp. IA-Hb1]
          Length = 325

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 152/328 (46%), Positives = 222/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVG SVVNALS+ L++ + R+G I+  S+  G+ +  L V G   + TGT +
Sbjct: 1   YKVSGGLHGVGASVVNALSTKLEVFVHRDGQIHYQSYKRGVPEEDLKVVGET-DQTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF     + ++ L +RLREL+FLN  + I++ DKR+ E       Y+GGI ++
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDEDPVDYY-YEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ +      I+G +D ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTREAIH-DAFFIEGEQDEISIEIAMQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNSMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V ++  ++  S +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|60459488|gb|AAX20080.1| DNA gyrase subunit B [Leptospira santarosai serovar Alexi]
          Length = 143

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 79/144 (54%), Positives = 107/144 (74%), Gaps = 1/144 (0%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSC 74
           I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D   
Sbjct: 1   IKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNII 59

Query: 75  TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW 134
            V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +
Sbjct: 60  EVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEY 119

Query: 135 LKLRIKREGNIYEMSFINGILDNP 158
           L++ + ++G IY   +  GI  +P
Sbjct: 120 LEVEVHQKGKIYTQKYEKGIPVSP 143


>gi|15551695|emb|CAC69419.1| DNA gyrase B subunit [Serratia fonticola]
          Length = 323

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 182/326 (55%), Positives = 241/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKHGEPQAPLKVVGET-D 59

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT + F PS   F +  +F YD L  RLRELSFLNS V I L DKR+   RE    Y+
Sbjct: 60  QTGTTLRFWPSFQTFTNNIEFEYDILAKRLRELSFLNSGVSIRLKDKRND--REDHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIRAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAAMTRTLNTYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VES +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVESLMNEKLVDYLMENPADAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|61676002|gb|AAX51666.1| gyrase subunit B [Waddlia chondrophila WSU 86-1044]
          Length = 219

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 104/221 (47%), Positives = 146/221 (66%), Gaps = 8/221 (3%)

Query: 28  PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87
           P MYIGDT   SGLH ++YEV+DN+IDE++ G+   I V +N DGS T+ DNGRGIP   
Sbjct: 1   PGMYIGDTS-TSGLHQLVYEVVDNSIDEAMAGHCSEIYVIINADGSITLEDNGRGIPIQK 59

Query: 88  HKEEG------ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141
           H++E       +SA EV+MT LHAGGKF++++YKVSGGLHGVGVS V ALSS + + + +
Sbjct: 60  HEKESQKQGREVSALEVVMTTLHAGGKFDKETYKVSGGLHGVGVSCVCALSSKMIVNVYK 119

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           +G ++EM F  G +   L   G+     GT +TF P   + +V +F+YD L  RLREL+F
Sbjct: 120 DGRVWEMHFSQGKVIKSLADMGATS-KKGTRITFWPDETVMTVTEFDYDILAKRLRELAF 178

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           LN  + I   D+R  +  ++   Y GG+++FVSYL+  + P
Sbjct: 179 LNRGISIFFQDERHDDKDDVNFRYDGGLKSFVSYLNEIRPP 219


>gi|148762475|dbj|BAF63939.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 327

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 149/328 (45%), Positives = 223/328 (67%), Gaps = 2/328 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L + + R+G I+   F  G+    L V G     TGT  
Sbjct: 1   YKVCGGLHGVGASVVNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDTE-VTGTTT 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI+++
Sbjct: 60  HFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGIKSY 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+R ++ + + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH +G 
Sbjct: 120 VEHLNRSREVIHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGF 179

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  ++   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 180 KTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 239

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++LPG
Sbjct: 240 RTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPG 299

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +DP  SEL++VEGDSAGGSAK
Sbjct: 300 KLADCSSKDPTISELYIVEGDSAGGSAK 327


>gi|329112164|emb|CCA63117.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
          Length = 354

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 163/356 (45%), Positives = 242/356 (67%), Gaps = 3/356 (0%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
             + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ + REG 
Sbjct: 1   VGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHREGK 60

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
           I+   +  GI    L V G   + TGT   F P  +IF     +++DTL  R+REL+FLN
Sbjct: 61  IHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAFLN 119

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
            ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + P+ ++GS+D I +++++
Sbjct: 120 RNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSL 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           ++N+GY  N+  FTNNI   +GGTH  G ++ALTR I  Y  K+   K    ++ G+D R
Sbjct: 179 QYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    +L E+P  A+ IV+K  
Sbjct: 239 EGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGT 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE+++VEGDSAGGSA
Sbjct: 299 MAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSA 354


>gi|330793204|ref|XP_003284675.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
 gi|325085373|gb|EGC38781.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
          Length = 1260

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 136/677 (20%), Positives = 249/677 (36%), Gaps = 99/677 (14%)

Query: 2   SDNIQNSSYDADSI----QILKGLDAVKKRPSMYIGD----------------------- 34
           S N  + +     I    Q     + V  RP  YIG                        
Sbjct: 69  STNNSSINSTERKIEEIYQKKTPTEHVLLRPDSYIGTIEKIEDDMWVLSNSMFNKKTKTV 128

Query: 35  ---------TDGES--------------------GLHHMIYEVLDNAIDE----SLEGYA 61
                    TD +S                    GL  +  E+L NA D     S   + 
Sbjct: 129 EKKNAQVSETDNQSSDKSSKNKTFIQPIKATYVPGLLKIYDEILVNAADNKKRDSTMSF- 187

Query: 62  DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
             I V +N + G+ ++ ++G+GIP  +H  E     E++M  L +G  FN    KV GG 
Sbjct: 188 --IKVEINPNKGTISIMNDGKGIPIVMHSTENCYVVEMVMGNLMSGSNFNDNELKVVGGR 245

Query: 121 HGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFL 176
           +G G  + N  S    +    K  G  Y   + N + +    +  +        T++TF 
Sbjct: 246 NGFGAKLTNIFSKEFVVETIDKSSGKKYYQKWSNNMSNREDPIITNIKEGEQDYTKITFT 305

Query: 177 PSSDIFS----VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           P  + F       D     ++ RL +++  N  V + L   +     E  +       + 
Sbjct: 306 PDLEKFKTNSLWDDDILQLMEKRLYDIAGCNPEVNVYLNGVQLNYDFEKYVKLYEHHLSG 365

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            +  +  ++   +         +   I + +     +    + F N+I    GGTH++ +
Sbjct: 366 SAKKEDSEELYKEESFIFGDIDERWKIGVGLSETGQF--TQVSFVNSINTIKGGTHVNYI 423

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
              + R I   ++K      +   V   + +      ++  + +P F SQ+KE L +   
Sbjct: 424 AEQIVRYIADKMKKK----HNDLEVRPINIKHHLALFVNCLIDNPSFDSQSKETLTTKSQ 479

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL-----TRRKGVLDI 407
                  + + + A   ++    + +   VL         + +         +    L+ 
Sbjct: 480 LFGSNPEIPESILAAFVKNSKIIERVAGWVLMKQKADLVHQSSTRQSKTALIKSIQKLED 539

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERAR 464
           A+  G       +   +  L + EGDSA   A  G S   R    + PLRGK+LNV   +
Sbjct: 540 ANWAGG------QKSNQCTLIVTEGDSAKSLALAGLSVIGRNTYGVFPLRGKLLNVCDVK 593

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLLTFF 521
             ++L+++EI  L   LG    +         +LRY KI+IM D D DG+HI+ L++ F 
Sbjct: 594 PKQLLNNEEINNLTNILGLSHKKTYETEEELKELRYGKIMIMADQDHDGSHIKGLVINFI 653

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
               P+L+  GF+     P+  +++     +S   +KD +   + L    + +    +  
Sbjct: 654 HHFWPNLLKIGFIEEFITPIIKVSKSSTQKRSFYTIKDYQKWREGLSKDQIKQYTIKYYK 713

Query: 578 SKGVISKNDLRNFIDDA 594
             G  +  + + +  D 
Sbjct: 714 GLGTSTSAEAKEYFSDL 730


>gi|15551677|emb|CAC69428.1| DNA gyrase B subunit [Serratia rubidaea]
          Length = 323

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 181/326 (55%), Positives = 240/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++ +G    PL V G    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGQVHEQTYSHGEPQAPLTVVGETE- 59

Query: 168 DTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS   F+   +F YD L  RLRELSFLNS V I L DKR+ +       Y+
Sbjct: 60  QTGTTVRFWPSHQTFTNVVEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKSAVEQQMNELLSEYLLENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|289811930|ref|ZP_06542559.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 193

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 86/189 (45%), Positives = 125/189 (66%), Gaps = 5/189 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSP 177

Query: 186 DFNYDTLQH 194
            F+   L H
Sbjct: 178 RFSVSRLMH 186


>gi|254381514|ref|ZP_04996878.1| DNA gyrase subunit B [Streptomyces sp. Mg1]
 gi|194340423|gb|EDX21389.1| DNA gyrase subunit B [Streptomyces sp. Mg1]
          Length = 387

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 135/399 (33%), Positives = 205/399 (51%), Gaps = 26/399 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+  +++ YDA  IQ+L+G +AV+KRP MY+G T  E GL  M++EV D A++E L G 
Sbjct: 1   MSE--EDTRYDASHIQVLEGWEAVRKRPGMYVGSTS-ERGLRQMVFEVADRAVNEVLAGR 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG-GKFNQKSYKVSGG 119
           A  + +TL  DG   V+D+G G+P D  +  G    E ++T++ AG G         +GG
Sbjct: 58  AASVDITLMPDGGVCVADDGPGVPIDETEGAGGPGLEALLTQMQAGVG---------TGG 108

Query: 120 LH-------GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            H       GVG +VVNALS  +   ++REG ++   +  G+   PL   G     +GT 
Sbjct: 109 RHDVTLGFCGVGPAVVNALSCRMTAEVRREGVLWVQEYARGVAATPLTEVG-TATGSGTT 167

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEA 231
           + F P +DIF   +F++D L+ R RE++FLN  ++ISL D +R  E R + + + GG   
Sbjct: 168 IAFWPDADIFGATEFSFDGLEERFREVAFLNQGLEISLTDLRRPDESRSVRLRFPGGTRD 227

Query: 232 FVSYLDRHKKPLMQ-SPIRIQGSRDNIS--IDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            V +LD H         I  +     +   +++A RW     E V  F N+ P   GGTH
Sbjct: 228 LVDFLDGHAAASTPVDTIAFECEDPRMGGVMEVAFRWCSCPGERVQSFANSRPTV-GGTH 286

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G R  +T  +T+Y  +             D   EG T+V+S+K+  P F   T+  L 
Sbjct: 287 AVGFRDGMTAAVTAYAREQGLLTPMDPGFDADRIGEGLTAVVSVKLDRPEFEGSTRGVLG 346

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +SEVR  V   V D L  WL+E    A  ++ + +  + 
Sbjct: 347 NSEVRDCVGQAVQDHLGRWLKEDRERAAAVIGQSVQGAR 385


>gi|66814704|ref|XP_641531.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|166210410|sp|P90520|TOP2M_DICDI RecName: Full=DNA topoisomerase 2, mitochondrial; Short=DNA
           topoisomerase II; Flags: Precursor
 gi|60469558|gb|EAL67548.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1284

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 139/645 (21%), Positives = 254/645 (39%), Gaps = 51/645 (7%)

Query: 29  SMYIGDTDGESGLHHMIYEVLDNAIDE----SLEGYADIITVTLNM-DGSCTVSDNGRGI 83
           + YI       GL  +  E+L NA D     S   +   I V +N  + S ++ ++G+GI
Sbjct: 167 ATYI------PGLLKIYDEILVNAADNKKRDSKMSF---IKVEINPNENSISIMNDGKGI 217

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KR 141
           P  +H+ E     E++M  L +G  FN    KV GG +G G  + N  S    +    K 
Sbjct: 218 PVVMHQTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKS 277

Query: 142 EGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSSDIFS----VQDFNYDTLQHR 195
            G  Y   + N + D    +      G    T++TF P  + F       D     ++ R
Sbjct: 278 SGKKYFQRWSNNMGDRSEPIITPIGEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERR 337

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           L +++  N+ + ++L  KR     +  +          +  + +++   +          
Sbjct: 338 LYDIAGCNTELMVTLNGKRLNYNFQSYVKLYEHHLNNSTKREDNEEQYREESFEFGEISP 397

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
              I + +     +    + F N+I    GGTH++ L   + R +   ++K         
Sbjct: 398 RWKIGIGLSETGQF--TQVSFVNSINTVKGGTHVNFLADQIVRYVGEKLKKK----HSDL 451

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            +   + +      ++  + +P F SQ+KE L +  +       + + L A   ++    
Sbjct: 452 EIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQFVKNSKII 511

Query: 376 KIIVKKVLDASMVRDAA-----RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           + +    L              +    L +    LD A+  G L        K+  L + 
Sbjct: 512 ERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGL------KSKECTLIIT 565

Query: 431 EGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           EGDSA   A  G S   R +  + PLRGK+LNV      ++LS++EI  L T LG     
Sbjct: 566 EGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHKN 625

Query: 488 DSFD---INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
                  +  LRY +++IM D D DG+HI+ L++ F     P+L+  GFL     P+   
Sbjct: 626 SYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIKA 685

Query: 545 TR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           T+     KS   +KD E   + + +  L +    +    G  +  + + +  +  K   +
Sbjct: 686 TKSSTQKKSFFTIKDYEKWRETISSDQLKQYTIKYYKGLGTSTSAEAKEYFSNLDK--HV 743

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
           IK  + +     I+ A    + +          ++  + + +  I
Sbjct: 744 IKFIWGDEADDLIKMAFAKDLSSLRQRWIKETDMSQGIDHSIKEI 788


>gi|1834317|dbj|BAA11510.1| DNA topoisomerase II [Dictyostelium discoideum]
          Length = 1282

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 141/645 (21%), Positives = 254/645 (39%), Gaps = 52/645 (8%)

Query: 29  SMYIGDTDGESGLHHMIYEVLDNAIDE----SLEGYADIITVTLNM-DGSCTVSDNGRGI 83
           + YI       GL  +  E+L NA D     S   +   I V +N  + S ++ ++G+GI
Sbjct: 167 ATYI------PGLLKIYDEILVNAADNKKRDSKMSF---IKVEINPNENSISIMNDGKGI 217

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KR 141
           P  +H+ E     E++M  L +G  FN    KV GG +G G  + N  S    +    K 
Sbjct: 218 PVVMHQTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKS 277

Query: 142 EGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSSDIFS----VQDFNYDTLQHR 195
            G  Y   + N + D    +      G    T++TF P  + F       D     ++ R
Sbjct: 278 SGKKYFQRWSNNMGDRSEPIITPIGEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERR 337

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           L +++  N+ + ++L  KR     +    Y    E  ++     K          +    
Sbjct: 338 LYDIAGCNTELMVTLNGKRLNYNFQ---SYVKLYEHHLNNSTNVKIMRHIVKNPFEFGEI 394

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           +    + +  ++      + F N+I    GGTH++ L   + R +   ++K         
Sbjct: 395 SPRWKIGIGLSETGQFTQVSFVNSINTVKGGTHVNFLADQIVRYVGEKLKKK----HSDL 450

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
            +   + +      ++  + +P F SQ+KE L +  +       + + L A   ++    
Sbjct: 451 EIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQFVKNSKII 510

Query: 376 KIIVKKVLDASMVRDAA-----RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           + +    L              +    L +    LD A+  G L        K+  L + 
Sbjct: 511 ERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGL------KSKECTLIIT 564

Query: 431 EGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           EGDSA   A  G S   R +  + PLRGK+LNV      ++LS++EI  L T LG     
Sbjct: 565 EGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHKN 624

Query: 488 DSFD---INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
                  +  LRY +++IM D D DG+HI+ L++ F     P+L+  GFL     P+   
Sbjct: 625 SYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIKA 684

Query: 545 TR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           T+     KS   +KD E   + + +  L +    +    G  +  + + +  +  K   +
Sbjct: 685 TKSSTQKKSFFTIKDYEKWRETISSDQLKQYTIKYYKGLGTSTSAEAKEYFSNLDK--HV 742

Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
           IK  + +     I+ A    + +          ++  + + +  I
Sbjct: 743 IKFIWGDEADDLIKMAFAKDLSSLRQRWIKETDMSQGIDHSIKEI 787


>gi|118201786|gb|ABK79706.1| DNA gyrase subunit b [Octadecabacter antarcticus]
          Length = 357

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 265/357 (74%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS +L+LRI R G  +   F  G     L V    G+ TGTEV FL S D FS ++F 
Sbjct: 1   NALSDYLELRIWRNGKEHYARFEGGFTVKHLEVVADCGDRTGTEVRFLASLDTFSNREFY 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  E     ++Y GG++ FV YLDR K  ++  PI
Sbjct: 61  FETLEKRLRELAFLNSGVRIILTDERPAEHLVSELYYDGGVKEFVKYLDRSKTSILPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G RD I +++AM WND Y+E VL FTNNIPQ+DGGTH++G R+ALTR I +Y + S 
Sbjct: 121 YVIGERDEIVVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRTINNYAQSSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K S  GDD REG T VLSIK+PDP+FSSQTK+KLVSSEVR  VE+ +N+ LS W 
Sbjct: 181 IAKREKISFTGDDAREGLTCVLSIKVPDPKFSSQTKDKLVSSEVRPAVENIMNEKLSEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AKI+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPQIAKIVVSKIVEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|254570861|ref|XP_002492540.1| Essential type II topoisomerase [Pichia pastoris GS115]
 gi|238032338|emb|CAY70361.1| Essential type II topoisomerase [Pichia pastoris GS115]
          Length = 1344

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 151/776 (19%), Positives = 265/776 (34%), Gaps = 95/776 (12%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           +D  Q L  L+ + KRP  YIG  +                         GL  +  E+L
Sbjct: 64  SDQYQKLSQLEHILKRPDTYIGSVEKHESEQWIYNKETESMERKVVSIVPGLFKIFDEIL 123

Query: 50  DNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D  +       I VT+  +     V ++G+               E+I   L    
Sbjct: 124 VNAADNKIRDPSMKNIEVTIKPEENLIEVKNDGK---------------ELIFGNLLTSS 168

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSA 165
            +N    KV+GG +G G  + N  S+   +       G +Y   +   +      V  S 
Sbjct: 169 NYNDDQKKVTGGRNGYGAKLCNIFSTEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSI 228

Query: 166 GNDT-GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDK-------- 213
              T  T+V+F P    F++ + + D    L+ R+ +L      + + L  +        
Sbjct: 229 KKATEYTKVSFRPDLAKFNMTELDEDILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNFK 288

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           +  E     + +K                       I     N   ++A   +D     V
Sbjct: 289 QYVEMYVKALEHKNDPIKTEDSSLLPPPSSSSPSQTIVYQTLNDRWEIAFAVSDSTFNQV 348

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N+I    GGTH++ +      QI   +EK   +K  K  +     +      ++  
Sbjct: 349 -SFVNSIATTSGGTHVNFI----ADQIVKKIEKEIKTKNKKAMIKPFQIKNNMFLFINCL 403

Query: 334 MPDPRFSSQTKEKLVS--SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           + +P F+SQTKE+L +  S+         +D +   L         IV  +LD + +   
Sbjct: 404 VENPAFTSQTKEQLTTRASQFGGKKTEVPDDFIKKILRTG------IVDAILDIAAMNAD 457

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRE 446
               ++   RK  +              ++  K  L L EGDSA      G A  GR   
Sbjct: 458 KALKKNDGSRKNRITGYPKLEDANKAGTKEGYKCTLILTEGDSASSLAVAGLAVVGRD-- 515

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF--DINKLRYHKIIIMT 504
              + PLRGK+LNV  A  D+++ + EI  +   +G    ++    +IN LRY  I+IMT
Sbjct: 516 YYGVYPLRGKMLNVREASADQIMKNAEIQAIKQIMGFQHKKNYTPENINSLRYGHIMIMT 575

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGI-----TRGKSLQYVKDEES 558
           D D DG+HI+ L++ F     P L+      +    P+  +        + +        
Sbjct: 576 DQDHDGSHIKGLIINFLESSFPGLLKVPNFLLEFITPIVKVTITSGPEKRKVIPFYSMPE 635

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
            E +    + S + + +      +++            + +       +       Q V 
Sbjct: 636 YEAWREQNTESFKQKYYKGLGTSLAEE-----------MREYFSQLDKHMKTFHALQDVD 684

Query: 619 SGVFNCESDQEIN---VSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQF 675
            G  +    ++               ++   + S       IN   IL            
Sbjct: 685 PGFIDLAFSKKKADDRKEWLRGFEPGVHLDPDLSIIPISDFINKELILFSMADNIRSIPS 744

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
           +L+G         Y     N   E  ++ L+           G  SL+ +I  + +
Sbjct: 745 MLDGFKPSQRKILYGCYKRNLRSEIKVSQLAGYIGEHSAYHHGDQSLIQSIIGLAQ 800


>gi|109452320|dbj|BAE96357.1| DNA gyrase subunit B [Actinobacillus ureae]
          Length = 365

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 213/368 (57%), Positives = 274/368 (74%), Gaps = 6/368 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALSS L+L I+REG++YE  +  G  D PL + G   + TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSSKLQLTIRREGHVYEQFYSLGEPDAPLTIIGDT-DKTGTMVRFWP 59

Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S DIF    +F Y  L  RLRELSFLNS V I L+D+R  +       Y+GGI+A+V YL
Sbjct: 60  SLDIFKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE--EHFKYEGGIKAYVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +  K  +  +P  +   +D I ++++++WND Y+ENV CFTNNIPQ+DGG+HL+G R AL
Sbjct: 118 NEGKTHIHNTPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGSHLAGFRGAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           TR + +Y+  S   KK   ++   GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEVR 
Sbjct: 178 TRALKNYIGNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRG 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES +N+ L+ +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+  L GKL
Sbjct: 238 AVESSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLLGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC E+DP  SEL+LVEGDSAGGSAKQG+ R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 298 ADCQEKDPALSELYLVEGDSAGGSAKQGQDRKNQAILPLKGKILNVEKARFDKMLSSQEV 357

Query: 475 GTLITALG 482
            TLITALG
Sbjct: 358 ATLITALG 365


>gi|118201800|gb|ABK79713.1| DNA gyrase subunit b [Roseobacter litoralis]
          Length = 356

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 214/357 (59%), Positives = 271/357 (75%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI REG  +   F  G   + L V G   + TGTEV F+ S+D FS  +++
Sbjct: 1   NALSDWLELRIWREGKEHVARFEGGFTVDHLKVVGDT-DRTGTEVRFMASTDTFSNLEYS 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I LID+R  E     +FY+GG++ FV YLDR K  +M  PI
Sbjct: 60  FETLEKRLRELAFLNSGVRIILIDERPAEELRSELFYEGGVKEFVKYLDRSKSSVMPEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 120 FITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRTINNYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            ++K+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ L+ W 
Sbjct: 180 IARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLAEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAKI+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 EENPSEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|118201822|gb|ABK79724.1| DNA gyrase subunit b [Sulfitobacter dubius]
          Length = 356

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 214/357 (59%), Positives = 269/357 (75%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI REG  +   F  G     L V G   + TGTEV F+ S+D FS ++++
Sbjct: 1   NALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGDT-DRTGTEVRFMASTDTFSNREYS 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  EP    ++Y GG++ FV YLDRHK  +M  PI
Sbjct: 60  FETLEKRLRELAFLNSGVRIILTDERPVEPLRTELYYDGGVKEFVKYLDRHKTSVMPEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G RD+I I++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR I  Y + S 
Sbjct: 120 FITGERDDIGIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRTINGYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ L+ W 
Sbjct: 180 IAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLAEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAK IV K+++A+  R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 EENPNEAKQIVGKIVEAAQAREAARKARELTRRKSAMDVNFLAGKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|329112162|emb|CCA63116.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342]
          Length = 354

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 161/356 (45%), Positives = 240/356 (67%), Gaps = 3/356 (0%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
             + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ + R+G 
Sbjct: 1   VGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGK 60

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
           I+   +  GI    L V G   + TGT   F P  +IF     + +DTL  R+REL+FLN
Sbjct: 61  IHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAFLN 119

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
            ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + P+ ++GS+D I +++A+
Sbjct: 120 RNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVAL 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           ++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K+   K    ++ G+D R
Sbjct: 179 QYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    +L E+P  A+ I+ K  
Sbjct: 239 EGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGT 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE+++VEGDSAGGSA
Sbjct: 299 MAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSA 354


>gi|318066837|emb|CBY89130.1| DNA gyrase subunit B [Halomonas desiderata]
          Length = 349

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 201/352 (57%), Positives = 254/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R G ++E  + +G+   PL V G     TGT V F PS D F+ 
Sbjct: 1   VSVVNALSEELKLTIWRAGQVHEQIYRHGVPQAPLSVVGKTE-KTGTRVHFKPSPDTFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L D+RS +       Y+GG++AFV++L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLTDERSGKE--ELFHYEGGLKAFVNHLNSNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFEAEREDGVVVEVAMQWNDSFAENIFCYTNNIPQRDGGTHLAGFRAALTRTLNGYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 ESEGLLKKSKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E+P +AK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SDYLIENPNDAKSIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|118201788|gb|ABK79707.1| DNA gyrase subunit b [Octadecabacter arcticus]
          Length = 357

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 265/357 (74%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS +L+LRI R G  +   F  G     L V    G+ TGTEV FL S D FS +DF 
Sbjct: 1   NALSDYLELRIWRNGKEHYARFEGGFTVKHLEVVADCGDRTGTEVRFLASLDTFSNRDFY 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  E     ++Y GG++ FV YLDR K  ++  PI
Sbjct: 61  FETLEKRLRELAFLNSGVRIILTDERPAEHLVSELYYDGGVKEFVKYLDRSKTSILPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G RD I +++AM WND Y+E VL FTNNIPQ+DGGTH++G R+ALTR I +Y + S 
Sbjct: 121 YVIGERDEIVVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRTINNYAQSSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ +N+ LS W 
Sbjct: 181 IAKKEKISFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENIMNEKLSEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  A+I+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPQIARIVVSKIVEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|324962686|gb|ADY62445.1| gyrase subunit B [Frankia sp. ArI3]
          Length = 360

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 157/359 (43%), Positives = 214/359 (59%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           +L  D +  V DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   SLLADAAVRVVDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+++   ++      PL V       TGT VTF     IF   +
Sbjct: 61  VVNALSTKLDVEIQVDGHVWFQPYVATRPAAPL-VKTGTTKKTGTSVTFWADPTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + ++TL  RL+E++FLN  + I+LID+R  E  E+T  Y  G+  FV++L+  K  + +S
Sbjct: 120 YKFETLSRRLQEMAFLNKGLSITLIDERPEERLEVTYKYSNGLVDFVAHLNATKDAIHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I  +LAM+WN GY E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLESKGVGIEAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +  V+  
Sbjct: 240 QNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLRNTEAKKFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARAIVSKSLDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|309253412|gb|ADO60721.1| gyrase subunit B [Micromonospora chaiyaphumensis]
          Length = 373

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 167/372 (44%), Positives = 242/372 (65%), Gaps = 8/372 (2%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ + + I ++G ++   + N     PL   G   + TG+ V+F P 
Sbjct: 3   GLHGVGVSVVNALSTKMAVEIHKDGFVWRQEYHNSKP-TPLEK-GEPTDRTGSAVSFWPD 60

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFV 233
           +D+F   DF++ T+  RL+E++FL   + I L+D+R       +PRE+T  Y+GGI  FV
Sbjct: 61  ADVFETVDFDFQTIYRRLQEMAFLTRGLTIHLLDERVAETEEGKPREVTFHYEGGIADFV 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G R
Sbjct: 121 RHLNASKNPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFR 180

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+
Sbjct: 181 AALTSVVNRYGA-EKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVK 239

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S V+   ND L  W + +P EAK I++K   A+  R AA++AR L RRK +L+  S+PGK
Sbjct: 240 SFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGK 299

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E
Sbjct: 300 LADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNE 359

Query: 474 IGTLITALGTGI 485
           +  LITALGTGI
Sbjct: 360 VQALITALGTGI 371


>gi|188037359|gb|ACD46298.1| DNA gyrase subunit B [Providencia sneebia]
          Length = 270

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 154/273 (56%), Positives = 198/273 (72%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+GN++
Sbjct: 1   IHEEEGVSAAEVIMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGNVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSS 205
           E  + +G    PL V G   + TGT V F PS + F  V +F Y+ L  RLRELSFLNS 
Sbjct: 61  EQIYRHGEPQGPLTVVGET-DQTGTRVRFWPSLETFKGVTEFEYEILAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I LIDKR+ +       Y+GGI+AFV YL R+K P+  S       +D I +++AM+W
Sbjct: 120 VSIKLIDKRNGKE--DHFHYEGGIKAFVEYLSRNKNPIHPSVFYFSTEKDGIGVEIAMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV C+TNNIPQ+DGGTHL+G R+A+TR + +YV+K    KK K S  GDD REG
Sbjct: 178 NDGFQENVYCYTNNIPQRDGGTHLAGFRAAMTRTLNNYVDKEGYQKKSKVSATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V S+K+PDP+FSSQTKEKLV +EV++ +E+
Sbjct: 238 LIAVXSVKVPDPKFSSQTKEKLVFTEVKTALET 270


>gi|161339254|gb|ABX64378.1| GyrB [Gordonia amicalis]
 gi|161339258|gb|ABX64380.1| GyrB [Gordonia amicalis]
          Length = 407

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 169/409 (41%), Positives = 238/409 (58%), Gaps = 37/409 (9%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GDAT 58

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------- 216
             TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R           
Sbjct: 59  RKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 217 -------------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
                                    +P+  T  Y  G+  ++ +L+R K+ +  + I   
Sbjct: 119 GDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFS 178

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K
Sbjct: 179 AKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIK 238

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           +    + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +
Sbjct: 239 EKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEAN 298

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VE
Sbjct: 299 PAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVE 358

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           GDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA
Sbjct: 359 GDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 407


>gi|118201780|gb|ABK79703.1| DNA gyrase subunit b [Oceanibulbus indolifex]
          Length = 356

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 214/357 (59%), Positives = 268/357 (75%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI REG  +   F  G     L V G   + TGTEV F+ S+D FS +++ 
Sbjct: 1   NALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGDT-DRTGTEVRFMASTDTFSNREYI 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  EP    ++Y GG++ FV YLDRHK  +M  PI
Sbjct: 60  FETLEKRLRELAFLNSGVRIILTDERPVEPLRTELYYDGGVKEFVKYLDRHKTSVMPEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G RD+I I++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR I  Y + S 
Sbjct: 120 FITGERDDIGIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRTINGYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ L+ W 
Sbjct: 180 IAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLAEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAK IV K+++A+  R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 EENPAEAKQIVGKIVEAAQAREAARKARELTRRKSAMDVNFLAGKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|308153204|dbj|BAJ22191.1| DNA gyrase subunit B [Rhodococcus australis]
          Length = 420

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 185/423 (43%), Positives = 253/423 (59%), Gaps = 34/423 (8%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ + L I+  G+ +  ++       PL V G A  +TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVDLEIRNNGSFWNQTYTYAEP-GPL-VEGVATRETG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI--------- 221
           T V+F P + IF    FN +T+  RL+E++FLN  + I+L D+R  E             
Sbjct: 59  TSVSFWPDAQIFETVKFNAETVARRLQEMAFLNKGLTITLTDERITEADVEAAPDVEGDD 118

Query: 222 ---------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                                T  Y  G+  ++ +L+R K  + +S +          ++
Sbjct: 119 SAESIKTADERAEKIAKVKTRTYHYPDGLVDYIKHLNRTKNAVHKSVVGFAAKGTGHEVE 178

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD-KRSVIG 319
           +AM+WND Y E+V  F N I   +GGTH  G R+ALT  +  Y       K   +  + G
Sbjct: 179 IAMQWNDSYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLIKDKKEDRLSG 238

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P EAKII+
Sbjct: 239 DDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKSFVQKACNEHLADWFEANPAEAKIII 298

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
           +K  D+   R AARRARD+ RRK   DI  LPGKLADC  +DP+KSE+++VEGDSAGGSA
Sbjct: 299 RKAADSHQARAAARRARDMVRRKTATDIGGLPGKLADCRSKDPEKSEVYIVEGDSAGGSA 358

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           K GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHK
Sbjct: 359 KSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHK 417

Query: 500 III 502
           I++
Sbjct: 418 IVL 420


>gi|60459506|gb|AAX20089.1| DNA gyrase subunit B [Leptospira interrogans serovar Australis]
          Length = 144

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/145 (52%), Positives = 107/145 (73%), Gaps = 1/145 (0%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSC 74
           I+IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D   
Sbjct: 1   IKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIV 59

Query: 75  TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW 134
            V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +
Sbjct: 60  EVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEY 119

Query: 135 LKLRIKREGNIYEMSFINGILDNPL 159
           L++ + ++G +Y   +  G+  + +
Sbjct: 120 LEVEVHQKGKVYTQKYEKGVPVSSV 144


>gi|15551673|emb|CAC69391.1| DNA gyrase B subunit [Citrobacter freundii]
          Length = 323

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 183/326 (56%), Positives = 243/326 (74%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG +++ ++++G+   PL VTG    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGETE- 59

Query: 168 DTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT+V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+
Sbjct: 60  LTGTQVRFWPSHETFTNVVEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD
Sbjct: 238 LVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPAHSELYLVEG 323


>gi|269799072|gb|ACZ43814.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 316

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 175/318 (55%), Positives = 232/318 (72%), Gaps = 4/318 (1%)

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           +SAAEVI+T LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R G I+  ++ +
Sbjct: 1   VSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRH 60

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G+ D P+  TG   + TGTE+ F PS + F+   F+YD L  RLRELSFLNS V I LID
Sbjct: 61  GVPDGPMAETG-VIDGTGTELRFWPSHETFTNTLFHYDILAKRLRELSFLNSGVSIKLID 119

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHE 271
           +R  + +     Y+GGI+AFV YL+ +K P+ +        R++ I++++AM+WNDG+ E
Sbjct: 120 ER-EDGKSDHFVYEGGIKAFVDYLNVNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQE 178

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVL 330
            + CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK    KK K S   GDD REG T+V+
Sbjct: 179 GIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVI 238

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L+ +L E+P EA  +V K++DAS  R+
Sbjct: 239 SVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRARE 298

Query: 391 AARRARDLTRRKGVLDIA 408
           AAR+ARD+TRRKG LD+A
Sbjct: 299 AARKARDMTRRKGALDLA 316


>gi|322497870|emb|CBZ32946.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1236

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 127/680 (18%), Positives = 246/680 (36%), Gaps = 58/680 (8%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
           DA   + L  +D V  RP MY+G  + +                       GL  ++ E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEI 62

Query: 49  LDNAIDESLEGYA----DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           L NA D             I++ ++  G  TV ++G G+P    +E  +   E++   L 
Sbjct: 63  LLNAADNINNSKGSVRQTYISIHISDTGEITVENDGAGLPIVRSREHKMYIPEMVFGHLL 122

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--ILDNPLVVT 162
               +N  S   + G HG G  + N LS+   +  + +G  + MS+ +   +   P V  
Sbjct: 123 TSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVNR 182

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQISLIDKRSPE 217
                   T V F+P    F   + +        L  R+ +L+ + S +++ L +     
Sbjct: 183 VDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNNVPFGF 242

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                      +      +                +  N S+    +      + ++   
Sbjct: 243 RTFTDYARLYSLPGLDGSMPPEP---------FVYTSPNGSVAYVPQLTQSP-KRIVGVV 292

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N +   +GGTH +     L   + S  +    + K   +      +  FT ++ +    P
Sbjct: 293 NGVVTYNGGTHCNAAMDILDSCLDSLSKNFKKNGKVVDTNR---VQRHFTVLVFLIQTQP 349

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F SQ+K +LVS+     V     +    +LE  P     +       +   +    A  
Sbjct: 350 KFDSQSKARLVSTVTMPRVPKNTLEK---YLERMPFLEAHVNSMDDQLANELNKEIGAGR 406

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLR 454
               K ++   +                 L + EGDSA   A        ++   + PLR
Sbjct: 407 RLSSKTLISAITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVFPLR 466

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK+LNV      ++ + +E+  L  +LG  +G++     +LRY ++++MTD D DG+HI+
Sbjct: 467 GKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDADGSHIK 526

Query: 515 TLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
            L++  F    P L+ N  G++ +   P+  I      + V    S  D+   Q      
Sbjct: 527 GLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRWQRAHPSA 586

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                    +  +      +    ++K I     +      +  ++  VF+    +    
Sbjct: 587 RYTAKYYKGLGTSTTAEGKEYFADMEKNIMQLTVDAR----DHQLLDSVFDAAEVEWRKE 642

Query: 633 SLASKLANRLNFIAEKSEKS 652
            +    A +     ++S+K+
Sbjct: 643 WMTKANAFQGEIDIDRSKKT 662


>gi|146082133|ref|XP_001464455.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
 gi|134068547|emb|CAM66843.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
          Length = 1236

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 127/680 (18%), Positives = 246/680 (36%), Gaps = 58/680 (8%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
           DA   + L  +D V  RP MY+G  + +                       GL  ++ E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEI 62

Query: 49  LDNAIDESLEGYA----DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           L NA D             I++ ++  G  TV ++G G+P    +E  +   E++   L 
Sbjct: 63  LLNAADNINNSKGSVRQTYISIHISDTGEITVENDGAGLPIVRSREHKMYIPEMVFGHLL 122

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--ILDNPLVVT 162
               +N  S   + G HG G  + N LS+   +  + +G  + MS+ +   +   P V  
Sbjct: 123 TSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVNR 182

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQISLIDKRSPE 217
                   T V F+P    F   + +        L  R+ +L+ + S +++ L +     
Sbjct: 183 VDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNNVPFGF 242

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                      +      +                +  N S+    +      + ++   
Sbjct: 243 RTFTDYARLYSLPGLDGSMPPEP---------FVYTSPNGSVAYVPQLTQSP-KRIVGVV 292

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N +   +GGTH +     L   + S  +    + K   +      +  FT ++ +    P
Sbjct: 293 NGVVTYNGGTHCNAAMDILDSCLDSLSKNFKKNGKVVDTNR---VQRHFTVLVFLIQTQP 349

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F SQ+K +LVS+     V     +    +LE  P     +       +   +    A  
Sbjct: 350 KFDSQSKARLVSTVTMPRVPKNTLEK---YLERMPFLEAHVNSMDDQLANELNKEIGAGR 406

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLR 454
               K ++   +                 L + EGDSA   A        ++   + PLR
Sbjct: 407 RLSSKTLISAITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVFPLR 466

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK+LNV      ++ + +E+  L  +LG  +G++     +LRY ++++MTD D DG+HI+
Sbjct: 467 GKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDADGSHIK 526

Query: 515 TLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
            L++  F    P L+ N  G++ +   P+  I      + V    S  D+   Q      
Sbjct: 527 GLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRWQRAHPSA 586

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                    +  +      +    ++K I     +      +  ++  VF+    +    
Sbjct: 587 RYTAKYYKGLGTSTTAEGKEYFADMEKNIMQLTVDAR----DHQLLDSVFDAAEVEWRKE 642

Query: 633 SLASKLANRLNFIAEKSEKS 652
            +    A +     ++S+K+
Sbjct: 643 WMTKANAFQGEIDIDRSKKT 662


>gi|4929497|gb|AAD34021.1|AF150876_1 DNA topoisomerase II [Leishmania donovani]
          Length = 1236

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 127/680 (18%), Positives = 246/680 (36%), Gaps = 58/680 (8%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
           DA   + L  +D V  RP MY+G  + +                       GL  ++ E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEI 62

Query: 49  LDNAIDESLEGYA----DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           L NA D             I++ ++  G  TV ++G G+P    +E  +   E++   L 
Sbjct: 63  LLNAADNINNSKGSVRQTYISIHISDTGEITVENDGAGLPIVRSREHKMYIPEMVFGHLL 122

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--ILDNPLVVT 162
               +N  S   + G HG G  + N LS+   +  + +G  + MS+ +   +   P V  
Sbjct: 123 TSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVNR 182

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQISLIDKRSPE 217
                   T V F+P    F   + +        L  R+ +L+ + S +++ L +     
Sbjct: 183 VDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNNVPFGF 242

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                      +      +                +  N S+    +      + ++   
Sbjct: 243 RTFTDYARLYSLPGLDGSMPPEP---------FVYTSPNGSVAYVPQLTQSP-KRIVGVV 292

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N +   +GGTH +     L   + S  +    + K   +      +  FT ++ +    P
Sbjct: 293 NGVVTYNGGTHCNAAMDILDSCLDSLSKNFKKNGKVVDTNR---VQRHFTVLVFLIQTQP 349

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F SQ+K +LVS+     V     +    +LE  P     +       +   +    A  
Sbjct: 350 KFDSQSKARLVSTVTMPRVPKNTLEK---YLERMPFLEAHVNSMDDQLANELNKEIGAGR 406

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLR 454
               K ++   +                 L + EGDSA   A        ++   + PLR
Sbjct: 407 RLSSKTLISAITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVFPLR 466

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK+LNV      ++ + +E+  L  +LG  +G++     +LRY ++++MTD D DG+HI+
Sbjct: 467 GKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDADGSHIK 526

Query: 515 TLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
            L++  F    P L+ N  G++ +   P+  I      + V    S  D+   Q      
Sbjct: 527 GLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRWQRAHPSA 586

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                    +  +      +    ++K I     +      +  ++  VF+    +    
Sbjct: 587 RYTAKYYKGLGTSTTAEGKEYFADMEKNIMQLTVDAR----DHQLLDSVFDAAEVEWRKE 642

Query: 633 SLASKLANRLNFIAEKSEKS 652
            +    A +     ++S+K+
Sbjct: 643 WMTKANAFQGEIDIDRSKKT 662


>gi|9624859|gb|AAF86355.1| DNA Topoisomerase II [Leishmania infantum]
          Length = 1236

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 127/680 (18%), Positives = 246/680 (36%), Gaps = 58/680 (8%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
           DA   + L  +D V  RP MY+G  + +                       GL  ++ E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEI 62

Query: 49  LDNAIDESLEGYA----DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           L NA D             I++ ++  G  TV ++G G+P    +E  +   E++   L 
Sbjct: 63  LLNAADNINNSKGSVRQTYISIHISDTGEITVENDGAGLPIVRSREHKMYIPEMVFGHLL 122

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--ILDNPLVVT 162
               +N  S   + G HG G  + N LS+   +  + +G  + MS+ +   +   P V  
Sbjct: 123 TSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVNR 182

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQISLIDKRSPE 217
                   T V F+P    F   + +        L  R+ +L+ + S +++ L +     
Sbjct: 183 VDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNNVPFGF 242

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                      +      +                +  N S+    +      + ++   
Sbjct: 243 RTFTDYARLYSLPGLDGSMPPEP---------FVYTSPNGSVAYVPQLTQSP-KRIVGVV 292

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N +   +GGTH +     L   + S  +    + K   +      +  FT ++ +    P
Sbjct: 293 NGVVTYNGGTHCNAAMDILDSCLDSLSKNFKKNGKVVDTNR---VQRHFTVLVFLIQTQP 349

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F SQ+K +LVS+     V     +    +LE  P     +       +   +    A  
Sbjct: 350 KFDSQSKARLVSTVTMPRVPKNTLEK---YLERMPFLEAHVNSMDDQLANELNKEIGAGR 406

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLR 454
               K ++   +                 L + EGDSA   A        ++   + PLR
Sbjct: 407 RLSSKTLISAITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVFPLR 466

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK+LNV      ++ + +E+  L  +LG  +G++     +LRY ++++MTD D DG+HI+
Sbjct: 467 GKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDADGSHIK 526

Query: 515 TLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
            L++  F    P L+ N  G++ +   P+  I      + V    S  D+   Q      
Sbjct: 527 GLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRWQRAHPSA 586

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                    +  +      +    ++K I     +      +  ++  VF+    +    
Sbjct: 587 RYTAKYYKGLGTSTTAEGKEYFADMEKNIMQLTVDAR----DHQLLDSVFDAAEVEWRKE 642

Query: 633 SLASKLANRLNFIAEKSEKS 652
            +    A +     ++S+K+
Sbjct: 643 WMTKANAFQGEIDIDRSKKT 662


>gi|329112166|emb|CCA63118.1| DNA gyrase subunit B [Bacillus thuringiensis]
          Length = 354

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 161/356 (45%), Positives = 240/356 (67%), Gaps = 3/356 (0%)

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144
             + ++ G  A EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS+ L++ + R+G 
Sbjct: 1   VGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGK 60

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
           I+   +  GI    L V G   + TGT   F P  +IF     + +DTL  R+REL+FLN
Sbjct: 61  IHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAFLN 119

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
            ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + P+ ++GS+D I +++A+
Sbjct: 120 RNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVAL 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           ++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K+   K    ++ G+D R
Sbjct: 179 QYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    +L E+P  A+ +V K  
Sbjct: 239 EGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKVVDKGT 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE+++VEGDSAGGSA
Sbjct: 299 MAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSA 354


>gi|294963338|gb|ADF50156.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 355

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 164/357 (45%), Positives = 246/357 (68%), Gaps = 3/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALS+ L++ + REG I+   +  GI    L V G     TGT   F P  +IF     +
Sbjct: 1   NALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTE-QTGTITRFKPDPEIFQETIVY 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + P
Sbjct: 60  EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEEP 118

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           + ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K+
Sbjct: 119 VYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKN 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    +
Sbjct: 179 NILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKF 238

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE+
Sbjct: 239 LLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEI 298

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           ++VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT 
Sbjct: 299 YIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTN 355


>gi|15551687|emb|CAC69423.1| DNA gyrase B subunit [Serratia marcescens]
          Length = 323

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 185/326 (56%), Positives = 240/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLTVVGETE- 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS   F+   DF YD L  RLRELSFLNS V I L DKR+   RE    Y+
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRTD--REDHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|6644326|gb|AAF21011.1|AF208260_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 208/371 (56%), Positives = 266/371 (71%), Gaps = 3/371 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NAL   L L I+R GN+YE ++  G    PL   G +   TGTEV F PS  IFS   F+
Sbjct: 13  NALGDKLMLTIRRNGNVYEQTYHLGEPHAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFH 71

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+     
Sbjct: 72  YEILAKRLRELSFLNSGVSIRLKDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVF 129

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                +D I +++    ND Y E V CFTNNIP++DGGTHL G R+ LTR + SY++K  
Sbjct: 130 HFTTEQDGIGVEVERDGNDAYQEGVYCFTNNIPERDGGTHLVGFRTVLTRTLNSYMDKGG 189

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             +K K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L
Sbjct: 190 TYRKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFL 249

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL+
Sbjct: 250 LENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELY 309

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG  
Sbjct: 310 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGPV 369

Query: 489 SFDINKLRYHK 499
               +KLR   
Sbjct: 370 ESKPDKLRVSH 380


>gi|294963290|gb|ADF50132.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 356

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 167/357 (46%), Positives = 248/357 (69%), Gaps = 2/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALS+ L + + R+G I+  ++  G+    + V G   + TGT   F+P  +IF+    +
Sbjct: 1   NALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTGTITHFVPDPEIFTETTVY 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  R+REL+FL   V+I++ DKR  + ++    Y+GGI+++V YL+R K+ + + P
Sbjct: 60  DYDLLSSRVRELAFLTKGVKITIEDKREEKEQKNEYCYEGGIKSYVEYLNRSKEVVHEEP 119

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I I+G++D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K 
Sbjct: 120 IYIEGTKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKK 179

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  ++ L  +
Sbjct: 180 GIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALETF 239

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P  A+ ++ K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL
Sbjct: 240 LFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISEL 299

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           ++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 300 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 356


>gi|289597839|gb|ADD12312.1| DNA gyrase subunit B [Alcanivorax sp. W11-5]
          Length = 352

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 205/355 (57%), Positives = 263/355 (74%), Gaps = 3/355 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  LKL I+R G ++E  + +G+ + PL V G     TGT V F PS+  F+   F+Y
Sbjct: 1   ALSEELKLTIRRNGKVHEQVYRHGVPNEPLKVVGETE-GTGTTVRFRPSAATFTNIKFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V+I L D+R+ +       Y+GG+ AFV+YL+  K PL +    
Sbjct: 60  DILAKRLRELSFLNSGVRIHLKDERTGQE--DLFEYEGGLSAFVAYLNGAKTPLNRVFHF 117

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                D I +++A++WND Y+EN+ CFTNNIPQ+DGG HL+G R+ALTR + SY+E    
Sbjct: 118 QCDREDGIGVEVALQWNDSYNENIYCFTNNIPQRDGGAHLAGFRAALTRTLNSYMENEGF 177

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            KK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +++    +L 
Sbjct: 178 LKKEKVATTGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMSELFQDYLL 237

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK IV+K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+L
Sbjct: 238 ENPAEAKQIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYL 297

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           VEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG G
Sbjct: 298 VEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCG 352


>gi|118201798|gb|ABK79712.1| DNA gyrase subunit b [Roseobacter denitrificans]
          Length = 356

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 214/357 (59%), Positives = 270/357 (75%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI REG  +   F  G     L V G   + TGTEV F+ S++ FS  D++
Sbjct: 1   NALSDWLELRIWREGKEHVARFEGGFTTRHLEVVGDT-DRTGTEVRFMASTETFSNLDYS 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I LID+R  E     +FY+GG++ FV YLDR K  +M  PI
Sbjct: 60  FETLEKRLRELAFLNSGVRIILIDERPAEELRSDLFYEGGVKEFVKYLDRSKSSVMPEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 120 FITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRTINNYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            ++K+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ L+ W 
Sbjct: 180 IARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLAEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAKI+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 EENPAEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|66474611|gb|AAY46875.1| GyrB [Aeromonas veronii bv. sobria]
          Length = 371

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 203/374 (54%), Positives = 264/374 (70%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPA 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            SY++K   SKK K +  GDD RE   + +S+ +P P+FSSQTK+ LVSSEV++ VE  +
Sbjct: 178 NSYMDKEDYSKKAKSAASGDDVREDLIAGISVTVPHPKFSSQTKDTLVSSEVKTAVEQAM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+ +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LDI   PGK A+    
Sbjct: 238 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKAREVTRRKGPLDIKFEPGKEAEFLYN 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +P  SEL +VE D  GGSAKQGR+R+NQAILP +GKILNVE+A FDKM+SSQE+GTLITA
Sbjct: 298 NPVLSELHIVERDYNGGSAKQGRNRKNQAILPSKGKILNVEKAGFDKMISSQEVGTLITA 357

Query: 481 LGTGIGQDSFDINK 494
           LG  IG+D  + +K
Sbjct: 358 LGRSIGRDEHNPDK 371


>gi|25990065|gb|AAN74972.1| DNA gyrase subunit B [Mesoplasma lactucae ATCC 49193]
          Length = 391

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 171/395 (43%), Positives = 251/395 (63%), Gaps = 7/395 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGT 171
           SYK+SGGLHGVG SVVNALS ++ + +K+ GNIY   F  G      + + G   +D GT
Sbjct: 1   SYKISGGLHGVGASVVNALSLYVDVEVKKNGNIYHQVFSEGGTKETEMEIIGKT-DDHGT 59

Query: 172 EVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            V F P  +IF    DF+YDT+++++++L++LN  + I L D+R  +          GI 
Sbjct: 60  RVLFKPDPEIFKETVDFDYDTIRNKVKQLAYLNKGITIQLTDQRIDKTVTYHF--PNGIV 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            +V   +  K  + Q+     G  + I +++A++WN  Y+E+ + F NNI  +DGG H  
Sbjct: 118 DYVKETNTGKPAINQTVFYADGIVEKIEVEIAVQWNAEYNEDSVSFVNNINTRDGGMHED 177

Query: 291 GLRSALTRQITSYV-EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           G + A+ R I  Y  EK     K  +    DD +EG TSV+SIK  DP++  QTK KL +
Sbjct: 178 GFKQAMVRIINRYAAEKDINKNKTPQRYNWDDIKEGMTSVISIKHTDPQYEGQTKTKLAN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +  V++ V +   ++L  +P +A  I+ K+  +   R AA+RAR+ TRRK  LD  S
Sbjct: 238 PDAKIAVDAVVGENFESYLWNNPEDAAAIMDKIQTSQKSRFAAQRAREDTRRKTALDGFS 297

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC+ +DP+ +EL++VEGDSAGGSAKQGR+ + QAILPLRGK+LNVE+ +  K  
Sbjct: 298 LPGKLADCASKDPEFAELYIVEGDSAGGSAKQGRNSKYQAILPLRGKVLNVEKVQPAKAF 357

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           ++QEI T+ITA+G G+ ++ FDI+K+RY KI+IMT
Sbjct: 358 TNQEIKTMITAIGAGV-REDFDISKIRYGKIVIMT 391


>gi|148971337|gb|ABR20206.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 432

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 165/439 (37%), Positives = 224/439 (51%), Gaps = 25/439 (5%)

Query: 97  EVIMTRLHAGGKFNQKS----YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           EVIMT LHAGGKF++KS    Y  SGGLHGVGVSV NALS  L++ +KREG ++ M+F +
Sbjct: 1   EVIMTVLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMTFGD 60

Query: 153 GILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           G +  PL V G+ G  +TGT V   P    F     N   L+  LR  + L   V + L 
Sbjct: 61  GFVIEPLAVQGTCGARNTGTRVRVWPDPRYFDEPQINLIELERGLRSKAVLLPGVSVRLR 120

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID----------- 260
            +      E T  Y GG+E +++        L+       G R     +           
Sbjct: 121 KEGDGRTLEQTWHYPGGLEQYLTERLGEDPLLIPV---FTGDRFFGVEEGDSFAPGEGAS 177

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
            A  W++        F N IP   GGTH +GLR+ L   + S++E      +    +  +
Sbjct: 178 WAFSWHETRSLQGESFVNLIPTPLGGTHEAGLRTGLFEALKSFIEHHGLLPRG-VCLQLE 236

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D       +LSI+M DP+F  QTK+KL S E   +V + V D    WL +H    K    
Sbjct: 237 DVSARLQFILSIRMLDPQFQGQTKDKLTSREALKLVSTLVRDPFEHWLNQHVEHGKAQAD 296

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
            V+  +M R  + +      ++    +A LPGKL DC      + ELFLVEGDSAGGSAK
Sbjct: 297 LVIRQAMARMKSGQK---IEKRKSSGVAVLPGKLTDCESERIDERELFLVEGDSAGGSAK 353

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYH 498
             R++  QAILPLRGK+LN       ++ +  EI  +  ALG         ++  + RY 
Sbjct: 354 MARNKLTQAILPLRGKVLNSFEVEQGRLFAITEIHDIAVALGIDPHGRGEPVDLSQRRYD 413

Query: 499 KIIIMTDADVDGAHIRTLL 517
           +IIIMTDADVDG+HIRTLL
Sbjct: 414 RIIIMTDADVDGSHIRTLL 432


>gi|10281014|dbj|BAB13748.1| type II DNA topoisomerase [Issatchenkia orientalis]
          Length = 804

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 133/683 (19%), Positives = 229/683 (33%), Gaps = 72/683 (10%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEG 92
                GL  +  E+L NA D  +       I V +N +    +V ++G+GIP ++H +E 
Sbjct: 9   VSIVPGLFKIFDEILVNAADNKIRDPSMKRIDVIINEEENVISVKNDGKGIPIEIHDKEN 68

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSF 150
           I   E+I   L     ++    KV+GG +G G  + N  S+   +       G  Y   +
Sbjct: 69  IYIPELIFGNLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSTEFTVHTADMSHGKEYTQVW 128

Query: 151 INGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSV 206
            N +       +      +  TE+ F P    F ++  ++D     + R+ +L      +
Sbjct: 129 RNNMSEVGKPKILNFKKKNEFTEIIFKPDLSKFGMEKLDHDILGVFKRRVYDLCGSVRGI 188

Query: 207 QISLIDKRSPEPREITMFY----------------------------KGGIEAFVSYLDR 238
           +++L  +                                         G  EA       
Sbjct: 189 RVTLNGELLKINNFKQYVELYVKAINKSKEERPHIPVKIETEDGTPLNGESEANTETSST 248

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            +  L ++   I     N   ++A   +DG    V  F N+I    GGTH+  + + L  
Sbjct: 249 PEPSLNENLPTIVHEIINDRWEIAFCISDGSFNQV-SFVNSIATTLGGTHVDDVANMLCG 307

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
           +IT  +++       K  +     +      ++  + +P F+ QTKE L +         
Sbjct: 308 KITEQIKRKN----KKAIIKPFQIKSKMFLFINCLVENPAFTFQTKEYLTTQ-------- 355

Query: 359 FVNDGLSAWLEEHPLEAKI-----IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
            ++      LE      K      I+ +VLD           +    +K  +        
Sbjct: 356 -LSKFGGKRLELPEKFIKKILNTGIIDEVLDIVQANADKALKKTDGAKKSRITGYPKLED 414

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLS 470
                 R+  K  L L EGDSA   A QG +   R      PLRGK+LNV  A  D+++ 
Sbjct: 415 ANKAGTREGYKCTLILTEGDSAKSLAVQGLAVVGRNYYGCFPLRGKVLNVREASTDQIMK 474

Query: 471 SQEIGTLITALGTGIGQDS--FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           +  I  +   +G    +     DI  LRY +I+IM D D DG+HI+ LL+ F     P L
Sbjct: 475 NGAIQAIKQIMGLQHKKHYGPDDIKSLRYGRIMIMADQDHDGSHIKGLLINFLEASFPGL 534

Query: 529 IHNGFLYI-IKPPLYGI-----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           +      I    P+  I        +           E +   +  +   +         
Sbjct: 535 LEIPNFLIEFITPIVKITIMSGPNRRKTIPFYSMPEYEQWRETEGSTCSYKQKYYKGLGT 594

Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642
           S         +  +    +       D    E      +   +   +             
Sbjct: 595 S------SAQEMREYFTQLDKHLKRFDALRDEDKSSIDLAFSKKKADDRKEWLRNYQPGT 648

Query: 643 NFIAEKSEKSWHGSINNSDILVK 665
              +  S+      IN   IL  
Sbjct: 649 YLDSTLSDIPISEFINKELILFS 671


>gi|327200397|gb|AEA36078.1| DNA gyrase subunit B [Mesorhizobium tianshanense]
          Length = 366

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 233/366 (63%), Positives = 286/366 (78%), Gaps = 10/366 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND------- 168
           VSGGLHGVGVSVVNALS+WLKL+I+R G I+EMSF +G  D PL VTGS           
Sbjct: 1   VSGGLHGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKVTGSYEQHKVAGTYE 60

Query: 169 --TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             +G+E+TF PS++ F++ +F++ TL+HRLREL+FLNS V+I L D R  +     + Y 
Sbjct: 61  GRSGSEITFFPSTETFTMVEFDFGTLEHRLRELAFLNSGVRILLTDARHADVVRHELHYD 120

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+E FV YLDR KKPL+  PI I+  RD I++++AM WND YHENVL FTNNIPQ+DGG
Sbjct: 121 GGLEEFVKYLDRVKKPLIDKPIAIKAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGG 180

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R ALTRQIT Y + S  +KK+K ++IGDDCREG T+VLS+K+PDP+FSSQTK+K
Sbjct: 181 THLAGFRGALTRQITGYGDSSGLTKKEKVALIGDDCREGLTAVLSVKVPDPKFSSQTKDK 240

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR VVE  VN+ L  WLEEHP E K+++ KV+ A+  R+AAR+ARD+T RK  L 
Sbjct: 241 LVSSEVRPVVEGLVNEALGTWLEEHPAEGKVVIDKVIQAAAAREAARKARDIT-RKSSLG 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           + SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD
Sbjct: 300 VTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFD 359

Query: 467 KMLSSQ 472
           +ML S 
Sbjct: 360 RMLGSD 365


>gi|62085694|gb|AAX63239.1| DNA gyrase subunit B [Gordonia terrae]
 gi|62085698|gb|AAX63241.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 424

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 180/427 (42%), Positives = 251/427 (58%), Gaps = 39/427 (9%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++        L   G+ 
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGFNWEQTYTYATP-GALEK-GTP 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS--------- 215
              TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEPPGDA 118

Query: 216 -------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + +  
Sbjct: 119 DGDEESGTTEAAEAVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVVGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
            G      +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       
Sbjct: 179 TGQGTGHEVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTLTVNKYAVDKKLI 238

Query: 311 KKDKRS-VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           K  K   + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   ++ L  WLE
Sbjct: 239 KDKKEDRLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRVCSEHLGHWLE 298

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAK I+KK++++   R AAR ARDL RRK   DI  LPGKLADC   DP K E+++
Sbjct: 299 ANPAEAKTIIKKIVESQRARMAARNARDLVRRKTATDIGGLPGKLADCRSNDPSKCEVYI 358

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D 
Sbjct: 359 VEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDE 417

Query: 490 FDINKLR 496
           FDI+KLR
Sbjct: 418 FDISKLR 424


>gi|118201776|gb|ABK79701.1| DNA gyrase subunit b [Marinovum algicola]
          Length = 357

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 216/357 (60%), Positives = 271/357 (75%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LR+ R G ++   F +G     L VTG A  ++GTEV FL S++ FS  D++
Sbjct: 1   NALSVWLELRVWRNGKVHYAKFEHGETTEHLRVTGDAEGESGTEVRFLASTNTFSNLDYD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +  L+ RLREL+FLNS V+I L D R  EP  I +FY GG++ FV Y+DRHK  +M  PI
Sbjct: 61  FHVLEKRLRELAFLNSGVKIILEDDRPAEPLHIELFYDGGVKEFVKYVDRHKHAMMPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            +QG RD I +++AM WND YHE VL FTNNIPQ+DGGTHL+G R ALTR I  Y ++S 
Sbjct: 121 YVQGERDEIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRTIQKYAQESG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ V + LS W 
Sbjct: 181 IAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVGEKLSEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAK+IV K+++A+M R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+ELF
Sbjct: 241 EENPNEAKMIVSKIIEAAMAREAARKARELTRRKSAMDVNFLAGKLKDCSEKDPAKTELF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+MLSSQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLSSQEIGNLVMALGTGI 357


>gi|254230345|ref|ZP_04923731.1| DNA gyrase subunit B [Vibrio sp. Ex25]
 gi|151937137|gb|EDN56009.1| DNA gyrase subunit B [Vibrio sp. Ex25]
          Length = 246

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 8/246 (3%)

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
            +L             ++   L   +       KL +     +    + + + +     E
Sbjct: 1   MALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLAERMSRRYPSALVNELIYTPRLTPE 60

Query: 626 --SDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
              D  +  +   +L  +LN           E   H  +  +   +     GV  +  + 
Sbjct: 61  QCHDASVVEAWTKQLIEQLNAKEVGASQYSYEVEQHEELGLNLPKIVVRTHGVTHEHAIS 120

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738
              + S         S  ++        +      + +      LD +     +G+S QR
Sbjct: 121 IDFLNSKEYGKLADLSEALDGLLEEGAYIKRGERTMPVASFAEALDWLVKESMRGLSRQR 180

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798
           YKGLGEMN  QLWETT++P+TR +++V I DA  AD LF+ LMGD+VEPRR FI+EN+L 
Sbjct: 181 YKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTTLMGDQVEPRRNFIEENALK 240

Query: 799 S-ALDI 803
              LD+
Sbjct: 241 VANLDV 246


>gi|323147004|gb|ADX32795.1| DNA gyrase B subunit [endophytic bacterium 26(2011)]
          Length = 240

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/243 (44%), Positives = 156/243 (64%), Gaps = 19/243 (7%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEV 98
           H+++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE+
Sbjct: 1   HLVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEI 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--- 155
           +MT LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+    
Sbjct: 61  VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNR 120

Query: 156 ---------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                     +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V
Sbjct: 121 VIEEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM+WN
Sbjct: 180 RIRLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQWN 237

Query: 267 DGY 269
           D +
Sbjct: 238 DSF 240


>gi|161339242|gb|ABX64372.1| GyrB [Gordonia sp. CC-MJ-5]
          Length = 409

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 169/411 (41%), Positives = 239/411 (58%), Gaps = 38/411 (9%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  +Y VSGGLHGVG+SVVNALS+ ++L I  +G  +E ++       PL   G A 
Sbjct: 1   GKFDSDAYAVSGGLHGVGISVVNALSTKVELEIANDGFNWEQTYSYAKP-GPLEK-GDAT 58

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS---------- 215
             TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R           
Sbjct: 59  RKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 216 -------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 GDDEAAPTTEVAETVKTETEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 NAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S+K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA 
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAF 409


>gi|323147006|gb|ADX32796.1| DNA gyrase B subunit [endophytic bacterium 27(2011)]
          Length = 241

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/244 (43%), Positives = 157/244 (64%), Gaps = 19/244 (7%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEV 98
           H+++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE+
Sbjct: 1   HLVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEI 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--- 155
           +MT LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+    
Sbjct: 61  VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNR 120

Query: 156 ---------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                     +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V
Sbjct: 121 VIEEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM+WN
Sbjct: 180 RIRLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQWN 237

Query: 267 DGYH 270
           D ++
Sbjct: 238 DSFN 241


>gi|323146990|gb|ADX32788.1| DNA gyrase B subunit [endophytic bacterium 21(2011)]
 gi|323146998|gb|ADX32792.1| DNA gyrase B subunit [endophytic bacterium 19(2011)]
          Length = 244

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/246 (43%), Positives = 158/246 (64%), Gaps = 19/246 (7%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEV 98
           H+++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE+
Sbjct: 1   HLVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEI 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--- 155
           +MT LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+    
Sbjct: 61  VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNR 120

Query: 156 ---------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                     +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V
Sbjct: 121 VIEEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM+WN
Sbjct: 180 RIRLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQWN 237

Query: 267 DGYHEN 272
           D ++E 
Sbjct: 238 DSFNET 243


>gi|331213043|ref|XP_003307791.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309298194|gb|EFP74785.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1566

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 142/717 (19%), Positives = 242/717 (33%), Gaps = 131/717 (18%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------------G 40
               + +Y     Q L  L+ V KRP  YIG  +                         G
Sbjct: 104 KKTASETY-----QKLSQLEHVLKRPDTYIGSVEAIRQFMWIFDKEKKTMVNKEISFVPG 158

Query: 41  LHHMIYEVLDNAIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGIS 94
           L+ ++ E+L NA D      S+    D + VT++ +    +V +NG+GIP ++H+ E I 
Sbjct: 159 LYKIVDEILVNAADNKQRDDSM----DTLKVTIDSEKNIISVMNNGKGIPIEIHETEQIY 214

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFI 151
             E+I   L AG  F+ +  K +GG +G G  + N  S+   +    +      Y+  F 
Sbjct: 215 IPELIFGHLLAGSNFDDEEKKTTGGRNGYGAKLANIYSTEFIVEAA-DKQTAKKYKQIFK 273

Query: 152 NGI-LDNPLVVTGSAGNDTGTEVTFLPSSDIFS------VQDFNYDTLQHRLRELSFLNS 204
           N + +     +T +   +  T+++F P    F+      +       +  R+ +++    
Sbjct: 274 NNMSVKEKPKITDNKKGEEYTKISFKPDLVKFNLPAENGLAGDMEALISKRVYDMAGTLR 333

Query: 205 SVQISLIDKRSPEPREITM--FYKGGIEAFVSY------LDRHKKPLMQSPIRIQGSRDN 256
           +V++ L D+R            Y  G+   +                  +   I      
Sbjct: 334 NVKVWLNDERIKLTGFKKYVEMYTSGVNEAIKGSAAKALEAPGSPGNGATKTPIIYEECG 393

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
              ++A   +DG  + V  F N+I    GGTH+  +   L  +I   V K       K +
Sbjct: 394 KRWEIAFAPSDGQFQQV-SFCNSIATTKGGTHVEHIVKQLVEKIIESVNKKK----AKLT 448

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           +     R      ++  + +P F SQTK      E  ++  S          E      K
Sbjct: 449 LKPYQVRNHLWVFVNCLIENPTFDSQTK------ENMTLGMSKFGSKCVMTEEFMKKVMK 502

Query: 377 I-IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
             ++  V+D +  ++ A   +    ++  +          +   R      L L EGDSA
Sbjct: 503 SGVIDSVMDFAKFKEEAALKKTDGSKRSRITGIVKLEDANNAGTRKAADCTLILTEGDSA 562

Query: 436 GGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
              A  G S   R+N  + PLRGK+LN                                 
Sbjct: 563 KSLAVAGLSVIGRDNYGVFPLRGKLLN--------------------------------- 589

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQ 551
                         D DG+HI+ L++ F     PSL+   GFL     P+  +TR K   
Sbjct: 590 --------------DHDGSHIKGLIINFLDYFFPSLLEIPGFLVEFITPIVKVTRKKEEL 635

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
                   E +              D +G  SK        DA    K       +  K 
Sbjct: 636 SFFTMPEFEKWKEEND---------DGRGWTSKYYKGLGTSDAKDAKKYFSRMSSHRIKF 686

Query: 612 FIEQAVISGVFNCESDQEIN---VSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
              Q     + +   +++                +     S+ ++   IN   IL  
Sbjct: 687 APTQENDRHLIDMAFNKKKADDRKEWLRGFEPGTHLDQNVSQITYTEFINKELILFS 743


>gi|32364168|gb|AAP80232.1| GyrB [Pasteurella multocida]
          Length = 361

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 207/364 (56%), Positives = 268/364 (73%), Gaps = 3/364 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NA     +L I+R+G ++E  +  G    PL   G   + TGT V F PS  IF+  +F 
Sbjct: 1   NAFPIKFQLTIRRQGKVHEQIYHLGEPQAPLAAIGET-DQTGTAVRFWPSPTIFNNIEFE 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I L DKR+   R+    Y+GGI+AFV Y +R+K P+ Q P 
Sbjct: 60  YDILAKRLRELSFLNSGVSIKLFDKRND--RQDHFHYEGGIQAFVEYPNRNKNPIHQKPF 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                +D I ++++M+WND ++ENV CFTNNIPQ+DGGTHL+G R ALTR + +Y++   
Sbjct: 118 YFSTEKDGIGVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGFRGALTRSLNNYMDNEV 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K  K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L  +L
Sbjct: 178 IIKNRKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESVMNEYLQQYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P +AKIIV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC ERDP  SEL+
Sbjct: 238 LENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQERDPALSELY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG+D
Sbjct: 298 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGRD 357

Query: 489 SFDI 492
            ++ 
Sbjct: 358 EYNP 361


>gi|6644323|gb|AAF21008.1|AF208257_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 212/390 (54%), Positives = 273/390 (70%), Gaps = 10/390 (2%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +   Y V  GL        NAL   L L I+R G++YE ++  G    PL   G A   T
Sbjct: 1   SDDVYVVDMGL-------ANALCDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TT 52

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI
Sbjct: 53  GTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGI 110

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +AFV YL+++K P+          +D I + +AM+WND Y E V CFTNNIP++DG T L
Sbjct: 111 KAFVEYLNQNKTPIHPKVFHFTTEQDGIGVQVAMQWNDAYQEGVYCFTNNIPERDGRTQL 170

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR +  Y++K   SKK K +  GD+ REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 171 VGFRTALTRTLNFYMDKEDYSKKAKSAASGDNVREGLIAVISVKVPDPKFSSQTKDKLVS 230

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA 
Sbjct: 231 SEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAG 290

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           LPGKLADC E+DP  SE ++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+
Sbjct: 291 LPGKLADCQEKDPALSEPYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMI 350

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           SSQ++GTLITALG GIG D    +KL    
Sbjct: 351 SSQQVGTLITALGYGIGPDECKQDKLCVPN 380


>gi|72536115|gb|AAZ73165.1| gyrase B [Yersinia enterocolitica]
          Length = 351

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 205/354 (57%), Positives = 268/354 (75%), Gaps = 4/354 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFN 188
           ALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F PS   F +  +F 
Sbjct: 1   ALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQ 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+     
Sbjct: 60  YEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVF 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K  
Sbjct: 118 YFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L
Sbjct: 178 YSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+
Sbjct: 238 LENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG
Sbjct: 298 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 351


>gi|319958742|gb|ADV90541.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 365

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 171/367 (46%), Positives = 255/367 (69%), Gaps = 3/367 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+  ++  G+    + V G   + TGT   F+P  +IF+    ++Y
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTGTITHFVPDPEIFTETTVYDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  R+REL+FL   V+I++ DKR  + ++    Y+GGI+++V YL+R K+ + + PI 
Sbjct: 60  DLLSSRVRELAFLTKGVKITIEDKREEKEQKNEYCYEGGIKSYVEYLNRSKEVVHEEPIY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G++D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K   
Sbjct: 120 IEGTKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKKGI 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  ++ L  +L 
Sbjct: 180 FKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALETFLF 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  A+ ++ K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL++
Sbjct: 240 ENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPGISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLR 496
           F++ K R
Sbjct: 359 FNLEKAR 365


>gi|218139463|gb|ACK57889.1| GyrB [Actinobaculum schaalii]
          Length = 412

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 181/413 (43%), Positives = 258/413 (62%), Gaps = 26/413 (6%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            Y VSGGLHGVGVSVVNALS+ ++  +KR+G ++ +++ NG+     +  G    +TGT 
Sbjct: 1   GYAVSGGLHGVGVSVVNALSTRMETIVKRDGYVWRIAYENGVP-TRELERGEETTETGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------- 215
            TF  + DIF   D++++TL+ R  +++FLN +++I+LID+R+                 
Sbjct: 60  QTFWANPDIFETTDYDFETLRKRFHQMAFLNKNLRINLIDERTSATSEGDEVTGAESETA 119

Query: 216 ---PEPREITMFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDG 268
              P  RE++  Y GG+  +V +    +  + +    I  +       I +++AM+W   
Sbjct: 120 AEVPAKREVSYCYSGGLLDYVKFLNSMKKSEIINNDIIYFEAEDDEKQIEVEVAMQWTSA 179

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GG H  G RSALT  I  Y  +    K    ++ GDD REG T+
Sbjct: 180 YSESVNTFANTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTA 239

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ +P+F  QTK KL ++E R+ V+  +   LS WL+ HP +AK I++K   A   
Sbjct: 240 VISVKLGNPQFEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPGDAKEIIRKGTQAFAA 299

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+ TRRK VL+ AS+PGKL DC+   P++ E+F+VEGDSAGGSA  GR  E+Q
Sbjct: 300 RAAARKAREATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQ 359

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           AI+P+RGKILNVE+AR D+ LSS  I +LITA GTGIG D FDI+KLRYHKII
Sbjct: 360 AIMPIRGKILNVEKARLDRALSSDTIQSLITAFGTGIG-DEFDIDKLRYHKII 411


>gi|318066803|emb|CBY89113.1| DNA gyrase subunit B [Carnimonas nigrificans]
          Length = 349

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 196/352 (55%), Positives = 260/352 (73%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALSS L L I R G ++  ++ +G+   PL V G     +GT++ F+PS + F+ 
Sbjct: 1   VSVVNALSSQLDLTIWRAGKVHTQTYSHGVPQKPLEVVGDTE-RSGTQIHFVPSPETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+Y+ L  RLRELSFLNS V I L D+R  +       Y+GG++AFV +L++++  + 
Sbjct: 60  IEFHYEVLAKRLRELSFLNSGVAIRLTDERDGKS--ELFHYEGGLKAFVEHLNKNRTTIN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I++++AM+WND Y+EN+LC+TNNIPQ+DGGTHL+G R++LTR + +Y+
Sbjct: 118 PVFHFSLDREDGITVEVAMQWNDSYNENLLCYTNNIPQRDGGTHLAGFRASLTRTLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEELQKKAKVTTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKNF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L EHP EAKIIV K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC E+DP K
Sbjct: 238 SEYLLEHPSEAKIIVNKMIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPAK 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|83758692|dbj|BAE54517.1| DNA gyrase subunit B [Rhodococcus sp. TKN46]
          Length = 395

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 164/397 (41%), Positives = 234/397 (58%), Gaps = 34/397 (8%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TGT VTF    
Sbjct: 1   LHGVGISVVNALSTRLDVDIKRDGFQWNQTYTDSKP-GEL-VKGEATKETGTTVTFWADP 58

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------ 215
           +IF    ++++T+  RL+E++FLN  + I+L D+R                         
Sbjct: 59  NIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTAEDES 118

Query: 216 --------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
                    + +     Y GG+E +V +++R K+P+  S +          +++AM+WN 
Sbjct: 119 AEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHELEIAMQWNS 178

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + GDD REG  
Sbjct: 179 GYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIREGLA 238

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK IV K + ++ 
Sbjct: 239 AIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAVSSAQ 298

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    
Sbjct: 299 ARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMY 358

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTG
Sbjct: 359 QAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTG 395


>gi|62944558|gb|AAY22127.1| DNA gyrase subunit B [Zymomonas mobilis subsp. francensis]
          Length = 348

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 204/349 (58%), Positives = 273/349 (78%), Gaps = 1/349 (0%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS++L+L + R+G  + M F +G+   PL V G + +  GT V FLPS   F + 
Sbjct: 1   SVVNALSNYLELTVWRDGYEHRMRFEHGVAVEPLQVVGPS-DKRGTRVRFLPSEATFKIT 59

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +FN++ L+HR REL+FLNS V++ L DKR    + + ++Y+GGI AFV +LDR K  L+ 
Sbjct: 60  EFNFEKLEHRYRELAFLNSGVRLQLTDKRPDPEKTVELYYEGGIAAFVKWLDRAKTALIP 119

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
            P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+  R+ALTR + +Y +
Sbjct: 120 EPVAIHGDRDDVVIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAFRAALTRTLNNYAD 179

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           KS   KK+K  + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR  +ES + D ++
Sbjct: 180 KSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPLESLMADKMA 239

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            WLEE+P  AK+I++K++DA+  R+AA+RAR+LTRRKGV+DIASLPGKLADC ERDP KS
Sbjct: 240 EWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLADCQERDPTKS 299

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           E+F+VEGDSAGGSAKQGR+R NQAILPL+GKILN ER+R D+MLSS+E+
Sbjct: 300 EIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEV 348


>gi|118201828|gb|ABK79727.1| DNA gyrase subunit b [Thalassobacter stenotrophicus]
          Length = 356

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 224/357 (62%), Positives = 273/357 (76%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LR+ REG  +   F +G     L V      +TGTEV FL S   FS  ++N
Sbjct: 1   NALSDWLELRVWREGKEHIARFEHGDTAEHLKVVSETE-ETGTEVRFLASLQTFSNLEYN 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           + TL++RLREL+FLNS V+I L D+R  EP    +FY+GG++ FV YLDR K   M  PI
Sbjct: 60  FKTLENRLRELAFLNSGVRIILEDERPAEPLRTELFYEGGVQEFVRYLDRSKTSGMADPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G +D+I I++AM WND YHE VL FTNNIPQ+DGGTHL+GLR ALTR I +Y + S 
Sbjct: 120 FITGEKDDIGIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGLRGALTRTINAYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  +N+ LS W 
Sbjct: 180 IAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLMNEKLSEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EEHP EAK IV K+++A++ R+AAR+AR+LTRRK  +D+ASLPGKLADC E+DP  SE+F
Sbjct: 240 EEHPNEAKTIVSKIIEAALAREAARKARELTRRKTAMDVASLPGKLADCQEKDPANSEIF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSAKQGRSR NQA+LPLRGKILNVERARFD+ML SQEIGTLITALGTGI
Sbjct: 300 LVEGDSAGGSAKQGRSRRNQAVLPLRGKILNVERARFDRMLGSQEIGTLITALGTGI 356


>gi|294963336|gb|ADF50155.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 356

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 167/357 (46%), Positives = 248/357 (69%), Gaps = 2/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALS+ L + + R+G I+  ++  G+    + V G   + TGT   F+P  +IF+    +
Sbjct: 1   NALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTGTITHFVPDPEIFTETTVY 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  R+REL+FL   V+I++ DKR  + ++    Y+GGI+++V YL+R K+ + + P
Sbjct: 60  DYDLLSSRVRELAFLTKGVKITIEDKREEKEQKNEYCYEGGIKSYVEYLNRSKEVVHEEP 119

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I I+G++D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K 
Sbjct: 120 IYIEGTKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKK 179

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  ++ L  +
Sbjct: 180 GIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALETF 239

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L E+P  A+ ++ K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SEL
Sbjct: 240 LFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPGISEL 299

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           ++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG
Sbjct: 300 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 356


>gi|33146004|emb|CAD57643.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 354

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 210/356 (58%), Positives = 272/356 (76%), Gaps = 3/356 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS + F+  +F+Y
Sbjct: 1   ALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTGTEIRFWPSEETFTNIEFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V I LIDKR  E +     Y+GGI+AFV +L+ +K P++Q    
Sbjct: 60  DILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGIQAFVEHLNTNKTPIIQKIFH 118

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+G R+ALTR + S+++K  
Sbjct: 119 FDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L
Sbjct: 179 FSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A LPGKLADC E+DP +SEL+
Sbjct: 239 IENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQEKDPAQSELY 298

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG G
Sbjct: 299 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 354


>gi|118201818|gb|ABK79722.1| DNA gyrase subunit b [Sulfitobacter brevis]
          Length = 356

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 214/357 (59%), Positives = 272/357 (76%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI REG  +   F  G     L V G   + TGTEV F+ S++ FS  +++
Sbjct: 1   NALSEWLELRIWREGKEHIARFEGGFTKEHLSVVGPT-DRTGTEVRFMASTETFSNLEYS 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  EP +  +FY+GG++ FV YLDRHK  +M  PI
Sbjct: 60  FETLEKRLRELAFLNSGVRIILTDERPEEPLKSELFYEGGVKEFVKYLDRHKSSVMPEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 120 FIVGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRTINNYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ LS W 
Sbjct: 180 IAKREKISFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLSEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EA+I+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 EENPAEARIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|72536113|gb|AAZ73164.1| gyrase B [Yersinia enterocolitica]
          Length = 351

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 205/354 (57%), Positives = 268/354 (75%), Gaps = 4/354 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFN 188
           ALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F PS   F +  +F 
Sbjct: 1   ALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQ 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+     
Sbjct: 60  YEILAKRLRELSFLNSGVSIKLRDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVF 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K  
Sbjct: 118 YFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L
Sbjct: 178 YSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+
Sbjct: 238 LENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG
Sbjct: 298 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 351


>gi|284813078|gb|ADB97208.1| DNA gyrase subunit B [Ignatzschineria indica]
          Length = 352

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 197/352 (55%), Positives = 261/352 (74%), Gaps = 3/352 (0%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
            LKL I + G ++E  +  G  D PL   G   + TGT V F PS ++F+  DF+YDTL 
Sbjct: 4   KLKLTIYKHGKVHEQEYTLGDPDYPLREIGET-DKTGTTVYFKPSKEVFNNIDFDYDTLY 62

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLREL+FLNS ++I+L D+R  + RE    Y+GGI+A+V  +++++  +          
Sbjct: 63  KRLRELAFLNSGIRITLRDER--DDREDVFQYEGGIKAYVELINKNRNKIHPQIFYCNCQ 120

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           +DNIS++++++W DGY E+V C+TNNIPQ DGGTHL+G R+A+TR +  Y+++    KK 
Sbjct: 121 KDNISVEISLQWTDGYQESVFCYTNNIPQSDGGTHLAGFRAAMTRTLNRYMQEEGLLKKT 180

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K +  GDD REG T+++S+K+P P+FSSQTKEKLVSSEVR VV+S + + L  +L E P 
Sbjct: 181 KVATTGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPVVDSILAERLEEFLLERPE 240

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AK I  K++DA+M R+AAR+AR+ TRRK  LDIA LPGKLADC E+DP KSELF+VEGD
Sbjct: 241 DAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLADCQEKDPAKSELFIVEGD 300

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           SAGGSAKQGRSR+ QAILPL+GKILNVERARFD+M+SS EIGTLITALG GI
Sbjct: 301 SAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMISSAEIGTLITALGCGI 352


>gi|15551675|emb|CAC69414.1| DNA gyrase B subunit [Salmonella enterica]
          Length = 323

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 180/326 (55%), Positives = 238/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G I+   + +G+   PL VTG   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-D 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+
Sbjct: 60  KTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+A   YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKASAEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD
Sbjct: 238 LVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|327200395|gb|AEA36077.1| DNA gyrase subunit B [Mesorhizobium loti]
          Length = 366

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 235/366 (64%), Positives = 285/366 (77%), Gaps = 10/366 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-------- 167
           VSGGLHGVGVSVVNALS+WLKLRI+R G I+EMSF +G  D PL  TGS           
Sbjct: 1   VSGGLHGVGVSVVNALSAWLKLRIRRNGQIFEMSFTHGNADAPLKATGSYEQDKQPGTYE 60

Query: 168 -DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             +G+E+TF PSS+ F++ +F++ TL+HRLREL+FLNS V+I L D R  +     + Y 
Sbjct: 61  GRSGSEITFFPSSETFTMVEFDFGTLEHRLRELAFLNSGVRIILTDARHADIVRHELHYD 120

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+E FV YLDR KKPL+  PI I+  RD I++++AM WND YHENVL FTNNIPQ+DGG
Sbjct: 121 GGLEEFVKYLDRVKKPLIDKPIAIKAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGG 180

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R ALTRQIT Y E S  +K++K  +IGDDCREG T+VLS+K+PDP+FSSQTK+K
Sbjct: 181 THLAGFRGALTRQITGYGESSGLTKREKVGLIGDDCREGLTAVLSVKVPDPKFSSQTKDK 240

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR VVE  VN+ L  WLEEHP E K+++ KV+ A+  R+AAR+ARD+T RK  L 
Sbjct: 241 LVSSEVRPVVEGLVNEALGTWLEEHPAEGKVVIDKVIQAAAAREAARKARDIT-RKSSLG 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD
Sbjct: 300 ITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFD 359

Query: 467 KMLSSQ 472
           +ML S+
Sbjct: 360 RMLGSE 365


>gi|148470196|gb|ABQ66046.1| gyrase b [uncultured bacterium]
          Length = 432

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 163/436 (37%), Positives = 222/436 (50%), Gaps = 19/436 (4%)

Query: 97  EVIMTRLHAGGKFNQKS----YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           EVIMT LHAGGKF++KS    Y  SGGLHGVGVSV NALS  L++ +KREG ++ M+F  
Sbjct: 1   EVIMTVLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMAFGE 60

Query: 153 GILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           G + +PL V G+ G  +TGT V   P    F     N   L+  LR  + L   V + L 
Sbjct: 61  GFVIDPLTVQGTCGVRNTGTRVRVWPEPRYFDEPRINLTELERGLRSKAVLLPGVSVRLR 120

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKK---PLMQSPIRIQGSR-----DNISIDLAM 263
            +      E T  Y GG+E +++          P+  S                    A 
Sbjct: 121 KEEEGRTLEQTWHYPGGLEQYLTERMGEDPLLIPIFTSERFFGAEEGDSFAPGEGASWAF 180

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            W++        F N IP   GGTH +GLR+ L   + S++E      +    +  +D  
Sbjct: 181 SWHETRTLQGESFVNLIPTALGGTHEAGLRTGLFEALKSFIEHHGLLPRG-VRLQLEDVS 239

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
                +LSIKM DP+F  QTK+KL S E   +V + V D    WL  H    K +   V+
Sbjct: 240 ARLQFILSIKMLDPQFQGQTKDKLTSREALKLVATLVRDPFEHWLNRHVEHGKALADLVI 299

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
             +M R  + +      ++    +A LPGKL DC      + ELFLVEGDSAGGSA+  R
Sbjct: 300 RHAMARMKSGQK---IEKRKSSGVAVLPGKLTDCESERIDERELFLVEGDSAGGSARLAR 356

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKII 501
           ++  QAILPLRGK+LN       ++  + EI  +  ALG         ++  + RY ++I
Sbjct: 357 NKLTQAILPLRGKVLNSFEVERGRLFGNMEIHDIAVALGIDPHARGDSVDLSQRRYDRVI 416

Query: 502 IMTDADVDGAHIRTLL 517
           IMTDADVDG+HIRTLL
Sbjct: 417 IMTDADVDGSHIRTLL 432


>gi|161339234|gb|ABX64368.1| GyrB [Gordonia sp. CC-MJ-1a]
 gi|161339236|gb|ABX64369.1| GyrB [Gordonia sp. CC-MJ-1b]
 gi|161339264|gb|ABX64383.1| GyrB [Gordonia sp. CC-MJ-28]
 gi|161339266|gb|ABX64384.1| GyrB [Gordonia sp. CC-MJ-33a]
 gi|161339268|gb|ABX64385.1| GyrB [Gordonia sp. CC-MJ-37]
 gi|161339272|gb|ABX64387.1| GyrB [Gordonia sp. CC-MJ-39a]
 gi|161339274|gb|ABX64388.1| GyrB [Gordonia sp. CC-MJ-39b1-1]
 gi|161339284|gb|ABX64393.1| GyrB [Gordonia sp. CC-MJ-48]
 gi|161339288|gb|ABX64395.1| GyrB [Gordonia sp. CC-T1-1]
 gi|161339290|gb|ABX64396.1| GyrB [Gordonia sp. CC-T1-3]
 gi|161339294|gb|ABX64398.1| GyrB [Gordonia sp. CC-TN-5]
          Length = 408

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 169/410 (41%), Positives = 239/410 (58%), Gaps = 38/410 (9%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  +Y VSGGLHGVG+SVVNALS+ ++L I  +G  +E ++       PL   G A 
Sbjct: 1   GKFDSDAYAVSGGLHGVGISVVNALSTKVELEIANDGFNWEQTYSYAKP-GPLEK-GDAT 58

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS---------- 215
             TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R           
Sbjct: 59  RKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 216 -------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 GDDEAAPTTEVAETVKTETEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIGF 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
               +   +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 NAKGEGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLI 238

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K+    + GDD REG  +V+S+K+ DP+F  QTK KL ++E++  V+   N+ L  W E 
Sbjct: 239 KEKDGKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEA 298

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAKII+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++V
Sbjct: 299 NPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 358

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           EGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA
Sbjct: 359 EGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 408


>gi|148971345|gb|ABR20210.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 432

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 164/436 (37%), Positives = 222/436 (50%), Gaps = 19/436 (4%)

Query: 97  EVIMTRLHAGGKFNQKS----YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
           EVIMT LHAGGKF++KS    Y  SGGLHGVGVSV NALS  L++ +KREG ++ M+F  
Sbjct: 1   EVIMTVLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMAFGE 60

Query: 153 GILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           G + +PL V G+ G  +TGT V   P    F     N   L+  LR  + L   V + L 
Sbjct: 61  GFVIDPLTVQGTCGVRNTGTRVRVWPEPRYFDEPRINLTELERGLRSKAVLLPGVSVRLR 120

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKK---PLMQSPIRIQGSR-----DNISIDLAM 263
            +      E T  Y GG+E +++          P+  S                    A 
Sbjct: 121 KEEEGRTLEQTWHYPGGLEQYLTERMGEDPLLIPIFTSERFFGAEEGDSFAPGEGASWAF 180

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            W++        F N IP   GGTH +GLR+ L   + S++E      +    +  +D  
Sbjct: 181 SWHETRTLQGESFVNLIPTALGGTHEAGLRTGLFEALKSFIEHHGLLPRG-VRLQLEDVS 239

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
                +LSIKM DP+F  QTK+KL S E   +V + V D    WL  H    K +   V+
Sbjct: 240 ARLQFILSIKMLDPQFQGQTKDKLTSREALKLVATLVRDPFEHWLNRHVEHGKALADLVI 299

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
             +M R  + +      ++    +A LPGKL DC      + ELFLVEGDSAGGSAK  R
Sbjct: 300 RHAMARMKSGQK---IEKRKSSGVAVLPGKLTDCESERIDERELFLVEGDSAGGSAKLAR 356

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKII 501
           ++  QAILPLRGK+LN       ++  + EI  +  ALG         ++  + RY ++I
Sbjct: 357 NKLTQAILPLRGKVLNSFEVERGRLFGNMEIHDIAVALGIDPHARGDSVDLSQRRYDRVI 416

Query: 502 IMTDADVDGAHIRTLL 517
           IMTDADVDG+HIRTLL
Sbjct: 417 IMTDADVDGSHIRTLL 432


>gi|324962640|gb|ADY62422.1| gyrase subunit B [Frankia sp. KB]
          Length = 360

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 154/359 (42%), Positives = 211/359 (58%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP  +   E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVTDNGRGIPVGMPPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I  +G+++   ++    D PL  TG+      + VTF     +F   +
Sbjct: 61  VVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTGTS-VTFWADPTMFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + Y+TL  RL+E++FLN  + I+L+D+R  E   +T  Y  G+  FV +L+  K  + +S
Sbjct: 120 YKYETLSCRLQEMAFLNKGLSITLVDERDEERVAVTYKYANGLVDFVGHLNATKDTIHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I  +LAM+ N GY E+V  F N I   +GGTH  G R+ALT  +  Y ++
Sbjct: 180 VISLESKGVGIEAELAMQCNGGYTESVYTFANTINTHEGGTHEEGFRAALTSAVNVYGKE 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +  V+  
Sbjct: 240 QNLLKPVKAGAKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARAIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|298364144|gb|ADI79215.1| GyrB [Verrucosispora lutea]
          Length = 372

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 169/374 (45%), Positives = 244/374 (65%), Gaps = 8/374 (2%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G + + TG+ V+F 
Sbjct: 1   SGGLHGVGVSVVNALSTKMAVEIHKDGFVWRQQYHHSKP-TPLEK-GESTDRTGSAVSFW 58

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEA 231
           P  D+F   DF++ T+  RL+E++FL   + I+L+D+R       + RE+T  Y GGI  
Sbjct: 59  PDPDVFETVDFDFQTIYRRLQEMAFLTRGLTINLLDERVAEGEEGKIREVTFKYDGGIAD 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G
Sbjct: 119 FVRHLNASKTPIHKTVVEYGAEEEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ 
Sbjct: 179 FRAALTSVVNRYGA-EKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTP 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S V+   ND L  WL+ +P EAKII+ K   A+  R AA++AR L RRK +L+  S+P
Sbjct: 238 VKSFVQRVCNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L +
Sbjct: 298 GKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKN 357

Query: 472 QEIGTLITALGTGI 485
            E+  LITALGTGI
Sbjct: 358 NEVQALITALGTGI 371


>gi|308152569|dbj|BAJ22263.1| DNA gyrase subunit B [Mycobacterium sp.]
          Length = 419

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 177/421 (42%), Positives = 251/421 (59%), Gaps = 33/421 (7%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            +Y+VSGGLHGVGVSVVNALS+ L+  I+++G  +   +   +    L        +TGT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIRKDGYEWFQVYDKSVP-GTLKQG-EKTTETGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------- 214
            + F    DIF    ++++T+  RL+E++FLN  + I L D+R                 
Sbjct: 60  TIRFWADPDIFETTVYDFETIARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVSDHAEA 119

Query: 215 -------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          + +     Y GG+  FV +++R K P+  S I   G  +   +++
Sbjct: 120 PKSAAEEAAEAAAPVKVKHRVFHYPGGLVDFVKHINRTKSPIQPSVIDFDGKGEGHEVEI 179

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y ++    K    ++ G+D
Sbjct: 180 AMQWNGGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKDKDPNLTGED 239

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S+K+  P+F  QTK KL ++EV+S V+   N+ +S W E +P EAK +V K
Sbjct: 240 IREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQISHWFEANPAEAKTVVNK 299

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
            + ++  R+AAR+AR L RRK   +I  LPGKLADC   DP KSEL++VEGDSAGGSAK 
Sbjct: 300 AVSSAQAREAARKARALVRRKSATEIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKS 359

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR    QAILPLRGKI+NVE+AR D++L + E+  +ITALGTGI  D FDI+KLRYHKI+
Sbjct: 360 GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIV 418

Query: 502 I 502
           +
Sbjct: 419 L 419


>gi|15551691|emb|CAC69421.1| DNA gyrase B subunit [Serratia liquefaciens]
          Length = 323

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 181/326 (55%), Positives = 241/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G   +PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPLSPLKVVGET-D 59

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F +  +F YD L  RLRELSFLNS V I L DKR+ +       Y+
Sbjct: 60  QTGTTVRFWPSYETFTNNTEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|324962656|gb|ADY62430.1| gyrase subunit B [Frankia sp. ChI7]
          Length = 368

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 157/367 (42%), Positives = 212/367 (57%), Gaps = 16/367 (4%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ +SY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+ +   + N     PL  T      TGT +TF     IF    
Sbjct: 61  VVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQT-GTSKKTGTTITFWADPTIFETTT 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSP--------EPREITMFYKGGIEAFVSYLDR 238
           + Y+TL  RL+E++FLN  + I+L D+R          EP E+T  Y  G+  FV +L+ 
Sbjct: 120 YKYETLFRRLQEMAFLNKGLSITLRDERGKATETEEAAEPTEVTFKYDNGLVDFVGHLNA 179

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  + +S I ++     I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT 
Sbjct: 180 TKDAVHRSVISLESKGTGIEAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTS 239

Query: 299 QITSYVEKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            + +Y +     K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E
Sbjct: 240 AVNAYAKDQNLLKPVKAGSKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTE 299

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            +  V+      L  W E +  EA+ IV K LDA   R AAR+ARDLTRRKG+L    LP
Sbjct: 300 AKKFVQEMCYSALKDWFEVNRTEARSIVSKALDAQRARIAARQARDLTRRKGLLGGTGLP 359

Query: 412 GKLADCS 418
           GKLADC 
Sbjct: 360 GKLADCQ 366


>gi|15551693|emb|CAC69420.1| DNA gyrase B subunit [Serratia grimesii]
          Length = 323

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 181/326 (55%), Positives = 241/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G    PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPLAPLKVVGET-D 59

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F +  +F YD L  RLRELSFLNS V I L DKR+ +       Y+
Sbjct: 60  LTGTTVRFWPSYETFTNNTEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|209863319|gb|ACI88759.1| DNA gyrase subunit B [Aeromonas sp. JH106]
          Length = 353

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 209/356 (58%), Positives = 269/356 (75%), Gaps = 3/356 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 60  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 117

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 118 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 178 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 238 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 297

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D +
Sbjct: 298 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEY 353


>gi|319958738|gb|ADV90539.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 366

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 175/368 (47%), Positives = 250/368 (67%), Gaps = 3/368 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189
           LS+ L + + R+G I+   F  G+    L +       TGT   F+P  +IF+    F+Y
Sbjct: 1   LSTTLDVTVYRDGKIHYQQFKRGVPAGDLEII-GETEVTGTTTHFVPDPEIFTETIEFDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           DTL +R+REL+FL   V I + D R  + R     Y+GGI+++V +L+R K+ + + P+ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVY 119

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           I+G +D I+I++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K+  
Sbjct: 120 IEGEKDGITIEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGV 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K    ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ +S  ++ L  +L 
Sbjct: 180 FKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLL 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK IV+K + A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SEL++
Sbjct: 240 ENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D 
Sbjct: 300 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED- 358

Query: 490 FDINKLRY 497
           F + K RY
Sbjct: 359 FTLEKARY 366


>gi|15551703|emb|CAC69416.1| DNA gyrase B subunit [Serratia entomophila]
          Length = 323

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 186/326 (57%), Positives = 241/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G+   PL V G    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYGHGVPQAPLKVVGETE- 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS   F+   DF YD L  RLRELSFLNS V I L DKRS   RE    Y+
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRSD--REDHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|15551719|emb|CAC69399.1| DNA gyrase B subunit [Hafnia alvei]
          Length = 323

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 184/326 (56%), Positives = 243/326 (74%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G+   PL V G    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAHGVPQFPLKVVGDTEI 60

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS   F +  +F YD L  RLRELSFLNS V I L DKR  + RE    Y+
Sbjct: 61  -TGTTVGFWPSLQTFSNHTEFQYDILAKRLRELSFLNSGVSIRLRDKR--DNREDHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV + VE+ +N+ L+ +L+E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVNTAVETQMNELLAEYLQENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPAHSELYLVEG 323


>gi|209863317|gb|ACI88758.1| DNA gyrase subunit B [Aeromonas sp. JH80]
          Length = 353

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 209/356 (58%), Positives = 268/356 (75%), Gaps = 3/356 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 60  RLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 117

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 118 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 178 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 238 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 297

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D +
Sbjct: 298 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEY 353


>gi|219121754|ref|XP_002181225.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407211|gb|EEC47148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1165

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 141/712 (19%), Positives = 257/712 (36%), Gaps = 83/712 (11%)

Query: 19  KGLDAVKKRPSMYIGDTD-----------------GESGLHH---MIYEVLDNAIDESLE 58
             L+ V  RPSMY+G  +                  E  L     +  E+L NA D  L+
Sbjct: 9   TPLEHVLLRPSMYVGSNEKAQPIACWVPDPIPTPPTEELLMKTTSVFDEILVNAADN-LQ 67

Query: 59  GY---ADIITVTLNM-----DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            +      I V ++      D    V ++G+GIP  +H++EG+   E++   L  G  F+
Sbjct: 68  RHPDSCTRIDVIIDPGSDNRDPFIRVRNDGKGIPVQVHQKEGMYVPEMLFGHLLTGSNFD 127

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL--DNPLVVTGSAG 166
               +++GG HG G  + N  S    +     R+   Y  ++ + +    +P +V   A 
Sbjct: 128 DNEKRLTGGRHGFGAKLTNIFSKSFTVETLDSRKRLKYRQTWSSNMTNASSPEIVEVPAD 187

Query: 167 NDTGTEVTFLPSSDIFSV-------QDFNYDTLQHRLRELSFLN-SSVQISLIDKRSPEP 218
               T V+F+P     +           +Y  +  R+ +++  +   ++++L        
Sbjct: 188 ATDYTCVSFVPDVARLTNDASALSISKEDYALMCRRVLDVAGCSAGRLRVTLNGVDVTMG 247

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                      +  +                        ++ + +     +    + F N
Sbjct: 248 SFPDYARLYRKQDSLPVC-------------FDAINSRWTVGVGLSETGSFEM--VSFVN 292

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            +    GGTH++ +   + ++I   +EK+    +  +       R      ++  + +P 
Sbjct: 293 GMATSRGGTHVNSILQQVIKKIQEKIEKTD--PELVQMASQGVIRRHLFVSVAALIENPT 350

Query: 339 FSSQTKEKLVSSEVRSVVE-SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           F SQ KE L SS        S     + + L+        IV+++  A+  R  A   + 
Sbjct: 351 FDSQMKECLTSSPADFGSSFSLSESFIKSVLQSEEEGGPGIVEEIRRAAQSRQQATLLKV 410

Query: 398 LTRR--KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILP 452
           +  +  K  L              +   +  L L EGDSA   A  G     R    + P
Sbjct: 411 IGGKTSKRQLLSIPKLEDAHHAGTKSGSECTLILTEGDSAKALAVAGLEVIGRARYGVFP 470

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVD 509
           LRGK+LNV  A   +M  + E+  L   +G    +    I    KLRY K+++MTD D D
Sbjct: 471 LRGKLLNVREAAVSQMAKNAEVTALCAIIGLDFDKTYETIEERRKLRYGKVMLMTDQDTD 530

Query: 510 GAHIRTLLLTFFFRQMPSLIH-------------NGFLYIIKPPLYGITRGKSLQYVKDE 556
           G+HI+ L++ FF    P+L+                FL     PL   ++  S       
Sbjct: 531 GSHIKGLVMNFFRYFWPNLLKPPVDLQVNDEDETPPFLSSFVTPLLKASKKSSKTGTLSF 590

Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616
            S+ +Y   +   E  +    +             +           F P    + I+  
Sbjct: 591 YSMAEYKKWRGSIEAEDFKKWTVKYYKGLGTSTPAEAREYFSAFNDHFRPFLWNSDIDGE 650

Query: 617 VISGVFNCESDQEINVSLA---SKLANRLNFIAEKSEKSWHGSINNSDILVK 665
           ++  VF+ E   +    +     + +N LN  +  +  S+   IN   I   
Sbjct: 651 LLDMVFDGERAADRRAWILDVYDETSNLLNDPSAGNNVSYEDFINKEMIHFS 702


>gi|84995060|ref|XP_952252.1| DNA topoisomerase II [Theileria annulata strain Ankara]
 gi|65302413|emb|CAI74520.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 1369

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 138/717 (19%), Positives = 256/717 (35%), Gaps = 84/717 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT----------------------DGESGLHHMIYEVL 49
            +  Q    L+ +  RP  YIG T                      D   GL+ +  E+L
Sbjct: 8   EERYQKKTQLEHILLRPDTYIGSTELNNQQMWLYDEEKNRMVYETIDYVPGLYKIFDELL 67

Query: 50  DNAID-----------ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
            NA D           E +      I VT++   G+  V ++G  IP  +H E  +   +
Sbjct: 68  VNAADVYARQLSDPTLEKM----TCIKVTIDRGTGAIVVYNDGEPIPIQIHSEHKMYVPQ 123

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL 155
           +I   L     ++    +V+GG +G G  + N  S    + +  K+    ++M++ N + 
Sbjct: 124 LIFGELLTSDNYDDSEERVTGGRNGFGAKLANIFSKTFTVVVGNKKTHKKFKMTWCNNMT 183

Query: 156 DNP-LVVTGSAGNDTGTEVTFLPSSDIFSVQDFN---YDTLQHRLRELSFLNSSVQISLI 211
                    S       ++TF+P    F++++ +   Y  L+ R+ +++     V++ L 
Sbjct: 184 KTKSPAHIESYTGPDFVKITFIPDYSRFNLEELDEGTYRVLKKRVYDMAGT-LGVKVYLN 242

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
           ++R               E     +  ++K      +          +            
Sbjct: 243 NERIKVKDFKDYVNLYLPEDATEIVKIYEKMYRWEVVISSSEDGFRQV------------ 290

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
               F N+I    GGTH+S +   L + +T    K     K    +  +  R      ++
Sbjct: 291 ---SFVNSINTLKGGTHVSHVVDPLVQSLTK---KVNSKNKGGIELKPNQIRNHIFVFIN 344

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
            ++ +P F SQTKE L +  V+   +  ++D     + +  +   II             
Sbjct: 345 CQIVNPSFDSQTKETLTTKIVKFGSKYTMSDKTLNQVLKSKIFDNII---SWLHEKTNIE 401

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRE 446
            ++   + +    L              R   +  L L EGDSA      G +  GR + 
Sbjct: 402 LKKKMKVAKGNDKLFGIPKLEDANKAGTRYATECTLILTEGDSAKTSCLAGLSVVGRDK- 460

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI-GQDSFDINKLRYHKIIIMTD 505
              + PL+GK+LNV  A + ++  + E+  ++  +G  I  +   D + LRY  I+IMTD
Sbjct: 461 -YGVFPLKGKLLNVREASYKQLTQNIEVQNILKIMGLDITNKLRQDSSGLRYGSIMIMTD 519

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITR--GKSLQYVKDEESLEDY 562
            D DG+HI+ LL+  F    P LI  NGF+     P+  +T      +      E   ++
Sbjct: 520 QDYDGSHIKGLLINMFHNFWPKLIQFNGFIKEFITPIIKVTNKSNNQVHSFFTIEDFNNW 579

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                +S     +    G  S N+ + +  +  +     K          ++   I   F
Sbjct: 580 KQTVDISNYRVKYYKGLGTSSDNEFKEYFGNLNRHIVEFKYV------DTVDDDSIDLAF 633

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           + +   +                    +  +   IN   I             V++G
Sbjct: 634 SKKRIDDR-KKWIQNYVLGTTVDHSIKKLRYSDFINKELIQFSIYDTERSIPSVIDG 689


>gi|118201796|gb|ABK79711.1| DNA gyrase subunit b [Roseivivax halotolerans]
          Length = 357

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 212/357 (59%), Positives = 265/357 (74%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F  G     L   G A    GTEV FL S   FS  D++
Sbjct: 1   NALSDWLELRIWRNGREHVARFERGETVEHLRDVGDANGQQGTEVRFLASLTTFSNLDYD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +  L+ RLREL+FLNS V+I L D+R  EP +  +FY+GG++ FV YLDR K+P+M  PI
Sbjct: 61  FHVLEKRLRELAFLNSGVRILLEDERPAEPLKSELFYEGGVKEFVKYLDRSKQPMMPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR +T Y   S 
Sbjct: 121 YMTGERDGIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRTLTRYATDSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES +N+ LS W 
Sbjct: 181 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESMMNEKLSEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EA+++V K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+ELF
Sbjct: 241 EENPNEARMVVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTELF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           +VEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+MLSSQEIG L+ ALGTGI
Sbjct: 301 IVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLSSQEIGNLVMALGTGI 357


>gi|118201808|gb|ABK79717.1| DNA gyrase subunit b [Sagittula stellata]
          Length = 357

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 212/357 (59%), Positives = 266/357 (74%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F +G     L V G A  + GTEV FL S+D FS  D++
Sbjct: 1   NALSVWLELRIWRNGKEHYAKFEHGETSEHLRVVGDAEGEQGTEVRFLASTDTFSNLDYD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           + TL+ RLREL+FLNS V+I L D R  EP  I + Y+GG+  FV YLDR K+ +M  PI
Sbjct: 61  FHTLEKRLRELAFLNSGVRIILDDDRPAEPLHIELHYEGGVREFVKYLDRSKQAVMPDPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            ++G +D I +++AM WND YHENVL FTNNIPQ+DGGTHL+G R ALTRQ+  Y ++S 
Sbjct: 121 YMEGEKDGIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRQLQKYAQESG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEVR  VES +N+ L  W 
Sbjct: 181 IAKREKINFTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLMNEKLGEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAK I  K+++A+M R+AAR+AR+LTRRK  +D++    KL DCSE+D  K+ELF
Sbjct: 241 EENPNEAKQITGKIIEAAMAREAARKARELTRRKTAMDVSFNAAKLKDCSEKDASKTELF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRRTQAILPLRGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|62084042|dbj|BAD91400.1| DNA gyrase B subunit [Shewanella hafniensis]
 gi|62084044|dbj|BAD91401.1| DNA gyrase B subunit [Shewanella putrefaciens]
 gi|62084046|dbj|BAD91402.1| DNA gyrase B subunit [Shewanella putrefaciens]
          Length = 358

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 205/360 (56%), Positives = 274/360 (76%), Gaps = 4/360 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F PS D FS  +F++
Sbjct: 1   ALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHF 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  R+RELSFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ +    
Sbjct: 60  EILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVNKDVFH 117

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+E   
Sbjct: 118 FMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMENEG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L+ +L
Sbjct: 178 YNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLNDYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE++
Sbjct: 238 LENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D
Sbjct: 298 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 357


>gi|15551681|emb|CAC69426.1| DNA gyrase B subunit [Serratia plymuthica]
          Length = 323

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 179/326 (54%), Positives = 238/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G    PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-D 59

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F +  +F YD L  RLRELSFLNS V I L DKR+ +       Y+
Sbjct: 60  QTGTTVRFWPSYETFTNNVEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ E++ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQEDIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + SY++K   SKK K S  GDD REG  + +S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAAVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVDYLMEDPGDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|148762389|dbj|BAF63896.1| DNA gyrase subunit B [Halobacillus sp. S1-5]
          Length = 325

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 221/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+G I+  S+  G+ +  L V G   + TGT +
Sbjct: 1   YKVCGGLHGVGASVVNALSTKLEVFVHRDGQIHYQSYKRGVPEEDLKVVGET-DQTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF     + ++ L +RLREL+FLN  + I++ DKR+ E       Y+GGI ++
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDEDPVDYY-YEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ +      I+G +D ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTREAIH-DAFFIEGEQDEISIEIAMQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNSMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V ++  ++  S +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|164456675|dbj|BAF97830.1| gyrase B subunit [Vibrio halioticoli]
          Length = 354

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 203/356 (57%), Positives = 271/356 (76%), Gaps = 3/356 (0%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
            + L I R G I+  ++ +G    PL   G   + TGTE+ F PS + F+  +F YD L 
Sbjct: 1   KVTLTIHRGGKIHTQTYKHGEPQAPLKAIGDT-DKTGTEIRFWPSEETFTNIEFYYDILA 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLRELSFLNS V I+L+D+R  E +     ++GGI+AFV +L+ +K P++Q        
Sbjct: 60  KRLRELSFLNSGVSINLVDER-VEDKSDHFMFEGGIKAFVEHLNTNKTPIIQKIFYFDIE 118

Query: 254 RDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
           R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR + ++++K   SKK
Sbjct: 119 REDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNTFMDKEGFSKK 178

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P
Sbjct: 179 AKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENP 238

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAKI+  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEG
Sbjct: 239 GEAKIVCGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAHSELYIVEG 298

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           DSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL TALG GIG+D
Sbjct: 299 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLNTALGCGIGRD 354


>gi|15551697|emb|CAC69417.1| DNA gyrase B subunit [Serratia ficaria]
 gi|15551699|emb|CAC69418.1| DNA gyrase B subunit [Serratia ficaria]
          Length = 323

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 186/326 (57%), Positives = 241/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYGHGEPQAPLKVVGET-D 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS   F+   DF YD L  RLRELSFLNS V I L DKRS   RE    Y+
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRSD--REDHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|330896978|gb|AEC48374.1| gyrase B [Streptomyces macrosporeus]
          Length = 397

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 173/393 (44%), Positives = 251/393 (63%), Gaps = 20/393 (5%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ + + +K +G+ +   +  G+   PL     A  +TGT VTF
Sbjct: 1   VSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLAR-HEATEETGTSVTF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPR 219
               DIF   D++++TL  R +E++FLN  ++I+L D+R                  E +
Sbjct: 60  WADGDIFETTDYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVK 119

Query: 220 EITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCF 276
            ++  Y+GGI  FV Y   R  + +  + I ++      ++S+++AM+WN GY E V  F
Sbjct: 120 SVSYHYEGGIVDFVKYLNSRKGELVHPTVIDLEAEDRDRHLSLEVAMQWNGGYTEGVYSF 179

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G R+ALT  I  Y       +    ++ GDD REG T+++S+K+ +
Sbjct: 180 ANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGLTAIISVKLAE 239

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL ++EV++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+AR
Sbjct: 240 PQFEGQTKTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIIRKGIAAATARVAARKAR 299

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGK
Sbjct: 300 DLTRRKGLLESASLPGKLSDCQSNDPVKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGK 359

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           ILNVE+AR D++L +QEI  +I+A GTG+ +D 
Sbjct: 360 ILNVEKARIDRILQNQEIQAMISAFGTGVHEDF 392


>gi|318066899|emb|CBY89161.1| DNA gyrase subunit B [Zymobacter palmae]
          Length = 349

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 207/352 (58%), Positives = 263/352 (74%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS+ L L I R G ++E ++I+G+  +PL V G     TGT+V F PS++ F+ 
Sbjct: 1   VSVVNALSAELTLTIWRSGKVHEQTYIHGVPQSPLAVIGETE-RTGTQVHFRPSAETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F YD L  RLRELSFLNS V I LID+R  + RE    Y+GG+ AFV +L++++ PL 
Sbjct: 60  IKFVYDILAKRLRELSFLNSGVAIRLIDER--DNREEVFHYEGGLRAFVEHLNQNRTPLC 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I +++AM+WND ++EN+ C+TNNIPQ+DGGTHL+G R+ALTR + SY+
Sbjct: 118 PVFHFNIEREDGIGVEVAMQWNDSFNENLHCYTNNIPQRDGGTHLAGFRAALTRTLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   
Sbjct: 178 ESEELQKKSKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L EHP EAK IV K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC E+DP K
Sbjct: 238 SEYLLEHPSEAKTIVNKMIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPAK 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|207093056|ref|ZP_03240843.1| DNA gyrase subunit B [Helicobacter pylori HPKX_438_AG0C1]
          Length = 438

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 189/441 (42%), Positives = 275/441 (62%), Gaps = 11/441 (2%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           +GT + F P   +  V +F    LQ R +E+++LN  ++IS  ++++    + T FY+ G
Sbjct: 4   SGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDG 61

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV    + +        +        SI++A+ + D Y+EN L F NNI   +GGTH
Sbjct: 62  LKQFVKDSAKKELLTPIISFKSMDEETRTSIEVALAYTDDYNENTLSFVNNIKTSEGGTH 121

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            +G +  L++ I  Y++ +   K  +   I +D +EG  +V+S+KM +P F  QTK KL 
Sbjct: 122 EAGFKMGLSKAILQYIDNN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLG 179

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SS  R++V   V D +  +LEE+P EAKII  K L A+  R+A+++AR+LTR+K  L + 
Sbjct: 180 SSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG 239

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +LPGKLADC  +DP +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+
Sbjct: 240 TLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKI 299

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           L S+EI  +ITA G GI Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R +  L
Sbjct: 300 LKSEEIKNMITAFGCGI-QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPL 358

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           I  G +YI + PLY   +GK+  Y+KD  +L+ +LI   ++            I KNDL 
Sbjct: 359 IEQGHVYIAQAPLYKYKKGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLM 412

Query: 589 NFIDDALKIDKLIKDFYPNHD 609
           N +  A      + +    ++
Sbjct: 413 NLLKVARHYRYALLELEKRYN 433


>gi|15551689|emb|CAC69424.1| DNA gyrase B subunit [Serratia marcescens subsp. marcescens]
          Length = 323

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 184/326 (56%), Positives = 239/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLTVVGETE- 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS   F+   DF YD L  RLRELSFLNS V I L DKR+   RE    Y+
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRTD--REDHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNN PQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNTPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|148879786|emb|CAM32248.1| DNA gyrase beta subunit [Sinorhizobium medicae]
          Length = 389

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 204/391 (52%), Positives = 272/391 (69%), Gaps = 12/391 (3%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVT 174
           SGGLHG+GVSVVNALS+ L++ + R G  Y ++F +G +  PL   G A   N TGT VT
Sbjct: 1   SGGLHGLGVSVVNALSTRLEVTVYRNGEEYFIAFEHGDVVEPLRTVGPAVPANRTGTSVT 60

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS   F    F+ D L  R+REL+FLNS V +  +D R         FY+GGI A V 
Sbjct: 61  FWPSPATFDFVVFDKDVLLRRMRELAFLNSGVTVKFLDARVEGAEPTVFFYEGGIRAMVE 120

Query: 235 YLDRHKKPLMQSPIRIQG--------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           Y DR++K +   PI I+G        +  +++ID+AM+WN GY + +L FTNNIPQ+DGG
Sbjct: 121 YSDRNEKVINAKPIVIRGVRKGNRNGTEIDVTIDIAMQWNTGYRDKILAFTNNIPQRDGG 180

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H++G R+ALTR ++ + E +  + K K S+  DD ++G T+V+S+K+PDP+FSSQTK+K
Sbjct: 181 NHVAGFRAALTRTMSQFAEAN-LTGKQKISITADDIKDGLTAVISVKVPDPKFSSQTKDK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVS EV+  V   VN+ L  WL+E+P E K IV+K+  A++ R+AAR AR+  R K  LD
Sbjct: 240 LVSQEVQGPVTQLVNEVLQVWLDENPAEGKKIVQKMAQAALAREAARLARETVRSKSKLD 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IASLP KLADC  R P ++E+F+VEGDSAGGSAK GR R+ QAILPLRGK+LNVERAR D
Sbjct: 300 IASLPDKLADCQSRKPHETEVFIVEGDSAGGSAKTGRDRKFQAILPLRGKVLNVERARMD 359

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           K+L S++IGTLI ALGTGI ++ F+ +KLRY
Sbjct: 360 KILQSEQIGTLIMALGTGIMEE-FNADKLRY 389


>gi|170177810|gb|ACB10231.1| GyrB [Aeromonas aquariorum]
          Length = 350

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 208/352 (59%), Positives = 267/352 (75%), Gaps = 3/352 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   VTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 349


>gi|118201824|gb|ABK79725.1| DNA gyrase subunit b [Sulfitobacter mediterraneus]
          Length = 356

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 216/357 (60%), Positives = 271/357 (75%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI REG  +   F  G     L V G   + TGTEV F+ S+D FS  +++
Sbjct: 1   NALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGDT-DRTGTEVRFMASTDTFSNLEYS 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  EP    +FY+GG++ FV YLDRHK  +M  PI
Sbjct: 60  FETLEKRLRELAFLNSGVRIILTDERPAEPLRSELFYEGGVKEFVKYLDRHKTSVMPEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR I SY + S 
Sbjct: 120 FIVGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRTINSYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ LS W 
Sbjct: 180 IAKKEKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLSEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EA+I+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 EENPNEARIVVSKIVEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|15551701|emb|CAC69415.1| DNA gyrase B subunit [Serratia entomophila]
          Length = 323

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 185/326 (56%), Positives = 240/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G+   PL V G    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYGHGVPQAPLKVVGETE- 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS   F+   DF YD L  RLRELSFLNS V I L D RS   RE    Y+
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDMRSD--REDHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|60459504|gb|AAX20088.1| DNA gyrase subunit B [Leptospira interrogans serovar Djasiman]
          Length = 143

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 75/144 (52%), Positives = 106/144 (73%), Gaps = 1/144 (0%)

Query: 16  QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCT 75
           +IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    
Sbjct: 1   KILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVE 59

Query: 76  VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWL 135
           V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L
Sbjct: 60  VKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYL 119

Query: 136 KLRIKREGNIYEMSFINGILDNPL 159
           ++ + ++G +Y   +  G+  + +
Sbjct: 120 EVEVHQKGKVYTQKYEKGVPVSSV 143


>gi|116326225|ref|YP_802945.1| DNA topoisomerase subunit DNA-dependent ATPase [Enterobacteria
           phage RB32]
 gi|228861318|ref|YP_002854339.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|115343818|gb|ABI94827.1| DNA topoisomerase subunit DNA-dependent ATPase [Enterobacteria
           phage RB32]
 gi|227438334|gb|ACP30647.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|291290216|dbj|BAI83011.1| topoisomerase II large subunit [Enterobacteria phage AR1]
          Length = 605

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 158/608 (25%), Positives = 247/608 (40%), Gaps = 70/608 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGD----------------TDGESGLHHMIYEVLDNAIDESLE 58
           I+IL  ++ +KKR  MYIG                      GL  +I E++DN++DE + 
Sbjct: 6   IKILSDIEHIKKRSGMYIGSSANEMHERFLFGKWESVQYVPGLVKLIDEIIDNSVDEGIR 65

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE---EGISAAEVIMTRLHAGGKFNQK 112
               +A+ I VT+  +   TV DNGRGIP  + K    E I       T   AGG F   
Sbjct: 66  TKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDD 124

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
             +V+GG++GVG S+ N  S           N   +   NG+ +         G   GT 
Sbjct: 125 KERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWEDI--PGKWKGTR 182

Query: 173 VTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           VTF+P    F          D    RL+ L+ +   +Q +   K+     +         
Sbjct: 183 VTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKVQGNFKKY------- 235

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                               I   ++N SI +  R  DG+ +  L + NNI  K+GG H+
Sbjct: 236 ------------ARQYDEHAIVQEQENCSIAVG-RSPDGFRQ--LTYVNNIHTKNGGHHI 280

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
             +   +   +   +++       K  V     +E  T V+ ++ M + RF SQTKE+L 
Sbjct: 281 DCVMDDICEDLIPQIKRK-----FKIDVTKARVKECLTIVMFVRDMKNMRFDSQTKERLT 335

Query: 349 SS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           S   E+RS ++       +  +    L  + I+  +++A++ R  A      T+      
Sbjct: 336 SPFGEIRSHIQ-----LDAKKISRAILNNEAILMPIIEAALARKLAAEKAAETKAAKKAS 390

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            A +   +          + LFL EGDSA G     R +E     PLRGK+LN     + 
Sbjct: 391 KAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYA 450

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG-AHIRTLLLTFFFRQM 525
            ML ++E+  +    G  +G+ +     L YH I IMTDAD DG   I   LL  FF   
Sbjct: 451 DMLKNKELFDICAITGLVLGEKA---ENLNYHNIAIMTDADHDGLGSIYPSLLG-FFSNW 506

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P L   G +  +K P+     GK  ++       E      +L +    +    G + K+
Sbjct: 507 PELFEQGRIRFVKTPVIIAQVGKKQEWFYTVAEYE--SAKDALPKHSIRYIKGLGSLEKS 564

Query: 586 DLRNFIDD 593
           + R  I +
Sbjct: 565 EYREMIQN 572


>gi|156946270|gb|ABU98323.1| DNA gyrase subunit beta [Alcanivorax indicus]
          Length = 351

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 204/355 (57%), Positives = 269/355 (75%), Gaps = 4/355 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L+L I+R G ++E  + +G+ D PL V G     TGT V F PS D F+  +F+Y
Sbjct: 1   ALSKELRLTIRRAGKVHEQIYRHGVPDEPLKVVGDT-QTTGTTVRFRPSEDTFTNIEFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V+I L D+R+ +       Y+GG+ AFV+YL+  K PL    + 
Sbjct: 60  DILAKRLRELSFLNSGVRIHLKDERTGKE--DLFEYEGGLAAFVTYLNEAKTPLN-KVLH 116

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
            Q  +D I +++A++WND Y+EN+ C+TNNIPQ+DGGTHL+G R+ALTR + +Y++    
Sbjct: 117 FQLEKDGIGVEVALQWNDSYNENIFCYTNNIPQRDGGTHLAGFRAALTRTMNNYMDTEGF 176

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            KK+K +V GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+  VE  + +  + +L 
Sbjct: 177 LKKEKVAVAGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAVEQAMGERFADYLL 236

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK+IV+K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++
Sbjct: 237 ENPAEAKLIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYI 296

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG G
Sbjct: 297 VEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 351


>gi|324962684|gb|ADY62444.1| gyrase subunit B [Frankia sp. CpI1]
          Length = 360

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 155/359 (43%), Positives = 215/359 (59%), Gaps = 8/359 (2%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           +L  D +  V DNGRGIP  +H  E   A EV++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   SLLADAAVRVVDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+++   ++      PL V       TGT VTF     IF   +
Sbjct: 61  VVNALSTKLDVEIQVDGHVWFQPYVATRPAAPL-VKTGTTKKTGTSVTFWADPTIFETTE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           + ++TL  RL+E++FLN  + I+LID+R  E  E+T  Y  G+  FV++L+  K  + +S
Sbjct: 120 YKFETLSRRLQEMAFLNKGLSITLIDERPEERLEVTYKYSNGLVDFVAHLNATKDAIHRS 179

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I ++     I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT  + +Y + 
Sbjct: 180 VISLESKGVGIEAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKD 239

Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
               K  K         + GDD REG T+++S+K+  P+F  QTK KL ++E +  ++  
Sbjct: 240 QNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFLQEM 299

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
               L  W E +  EA+ I+ K LDA   R AAR+ARDLTRRKG+L    LPGKLADC 
Sbjct: 300 CYSALKDWFEVNRTEARAILSKSLDAQRARIAARQARDLTRRKGLLGGTGLPGKLADCQ 358


>gi|207107894|dbj|BAG71959.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247]
          Length = 408

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 176/411 (42%), Positives = 242/411 (58%), Gaps = 35/411 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I   G  +E ++ +     PL   G A   TGT V F P  +IF 
Sbjct: 1   GISVVNALSTKVELEINYGGFHWEQTYDHAKPQ-PLEK-GDATRKTGTLVRFWPDPEIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------------------- 214
              F+ +T+  RL+E++FLN  + I+L DKR                             
Sbjct: 59  TTVFSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDESVADAAETVKTEEE 118

Query: 215 ---SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
                +P+  T  Y  G+  ++ +L+R K+P+  S I          +++AM+WN GY E
Sbjct: 119 KKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVIGFTAKGTGHEVEIAMQWNAGYSE 178

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S
Sbjct: 179 SVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLAAVIS 238

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ DP+F  QTK KL ++EV+  V+   N+ L+ W E +P EAKII+KK +D+S  R A
Sbjct: 239 VKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAEAKIIIKKAVDSSQARLA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAIL
Sbjct: 299 ARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           PLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 PLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 408


>gi|294963288|gb|ADF50131.1| DNA gyrase subunit B [Bacillus thuringiensis]
          Length = 353

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 162/355 (45%), Positives = 245/355 (69%), Gaps = 3/355 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FN 188
           ALS+ L++ + R+G I+   +  GI    L V G   + TGT   F P  +IF     + 
Sbjct: 1   ALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEYE 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + P+
Sbjct: 60  FDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEEPV 118

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            ++GS+  I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K+ 
Sbjct: 119 YVEGSKGGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNN 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    +L
Sbjct: 179 ILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P  A+ IV K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE++
Sbjct: 239 LENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIY 298

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           +VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT
Sbjct: 299 IVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGT 353


>gi|118201792|gb|ABK79709.1| DNA gyrase subunit b [Roseisalinus antarcticus]
          Length = 357

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 266/357 (74%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F +G     L VTG +   TGTEV FL S+D FS  D++
Sbjct: 1   NALSVWLELRIWRNGKAHYARFEHGDTVEHLRVTGPSEGKTGTEVRFLGSTDTFSNLDYD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           + TL+ RLREL+FLNS V+I L D+R  EP  + +FY+GG++ FV YLDR K  ++  PI
Sbjct: 61  FHTLEKRLRELAFLNSGVRIILEDERPAEPVRVELFYEGGVKEFVKYLDRSKSGMLPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G R+ I+++ AM WND YHENVL FTNNIPQ+DGGTH++G RSALTR +T Y   + 
Sbjct: 121 HVIGEREGITVEAAMWWNDTYHENVLPFTNNIPQRDGGTHMAGFRSALTRTVTKYATDTG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ + + L+ W 
Sbjct: 181 IAKREKVNFTGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLIGEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK IV K+++A+  R+AAR+AR+LTRRK  +D+  L GKL DCSE+D  K+ELF
Sbjct: 241 EENPAAAKGIVSKIVEAAQAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDATKTELF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QA+LPLRGKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|60459482|gb|AAX20077.1| DNA gyrase subunit B [Leptospira interrogans serovar Medanesis]
          Length = 143

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/144 (52%), Positives = 106/144 (73%), Gaps = 1/144 (0%)

Query: 16  QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCT 75
           +IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    
Sbjct: 1   KILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVE 59

Query: 76  VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWL 135
           V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L
Sbjct: 60  VKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYL 119

Query: 136 KLRIKREGNIYEMSFINGILDNPL 159
           ++ + ++G +Y   +  GI  + +
Sbjct: 120 EVEVHQKGKVYTQKYERGIPVSSV 143


>gi|164456701|dbj|BAF97843.1| gyrase B subunit [Vibrio navarrensis]
          Length = 356

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 205/358 (57%), Positives = 276/358 (77%), Gaps = 3/358 (0%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
            ++L I R G+I+  ++ +G+   PL V G     TGT V F PS++ F+  +F+YD L 
Sbjct: 1   KVQLTIYRGGHIHTQTYHHGVPQVPLTVVGDTE-KTGTTVRFWPSAETFTNIEFHYDILA 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ +        
Sbjct: 60  KRLRELSFLNSGVSIKLQDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNTE 118

Query: 254 RDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
           R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K   SKK
Sbjct: 119 REDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNTYMDKEGFSKK 178

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P
Sbjct: 179 AQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENP 238

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEG
Sbjct: 239 SEAKQVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEG 298

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           DSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D +
Sbjct: 299 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 356


>gi|327200393|gb|AEA36076.1| DNA gyrase subunit B [Mesorhizobium huakuii]
          Length = 366

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 233/366 (63%), Positives = 285/366 (77%), Gaps = 10/366 (2%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-------- 167
           VSGGLHGVGVSVVNALS+WLKL+I+R G I+EMSF +G  D PL  TGS           
Sbjct: 1   VSGGLHGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKATGSYEQDKQPGTYE 60

Query: 168 -DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             +G+ +TF PS++ F++ +F++ TL+HRLREL+FLNS V+I L D R  +     + Y 
Sbjct: 61  GRSGSSITFFPSAETFTMVEFDFGTLEHRLRELAFLNSGVRIILTDARHADIVRHELHYD 120

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GG+E FV YLDR KKPL++ PI I+  RD I++++AM WND YHENVL FTNNIPQ+DGG
Sbjct: 121 GGLEEFVKYLDRVKKPLIEKPIAIKAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGG 180

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R ALTRQIT Y E S  +KK+K S+IGDDCREG T+VLS+K+PDP+FSSQTK+K
Sbjct: 181 THLAGFRGALTRQITGYGESSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQTKDK 240

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEVR VVE  VN+ L  WLEEHP E K+++ KV+ A+  R+AAR+ARD+T RK  L 
Sbjct: 241 LVSSEVRPVVEGLVNEALGTWLEEHPTEGKVVIDKVIQAAAAREAARKARDIT-RKSSLG 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           + SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD
Sbjct: 300 VTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFD 359

Query: 467 KMLSSQ 472
           +ML S 
Sbjct: 360 RMLGSD 365


>gi|318066883|emb|CBY89153.1| DNA gyrase subunit B [Halotalea alkalilenta]
          Length = 349

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 201/352 (57%), Positives = 263/352 (74%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALSS LKL I R G ++E ++++G+   PL V G     +GT++ F+PS + F+ 
Sbjct: 1   VSVVNALSSKLKLTIWRAGKVHEQTYVHGVPQAPLAVVGDTE-RSGTQIHFVPSPETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+Y+ L  RLRELSFLNS V I L D+R  + RE    Y+GG+ AFV +L++++  + 
Sbjct: 60  IEFHYEILAKRLRELSFLNSGVAIRLADER--DGREELFHYEGGLRAFVDHLNKNRATVC 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I +++AM+WND Y+EN+LC+TNNIPQ+DGGTHL+G R+ALTR + SY+
Sbjct: 118 PVFHFNVEREDGIGVEVAMQWNDSYNENLLCYTNNIPQRDGGTHLAGFRAALTRTLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEELQKKAKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRNF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L EHP EAK IV K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC E+DP K
Sbjct: 238 ADYLLEHPQEAKTIVNKMIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPAK 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|83758688|dbj|BAE54515.1| DNA gyrase subunit B [Rhodococcus sp. TKN14]
          Length = 394

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 163/396 (41%), Positives = 233/396 (58%), Gaps = 34/396 (8%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TGT VTF    
Sbjct: 1   LHGVGISVVNALSTRLDVDIKRDGFQWNQTYTDSKP-GEL-VKGEATKETGTTVTFWADP 58

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------ 215
           +IF    ++++T+  RL+E++FLN  + I+L D+R                         
Sbjct: 59  NIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTAEDES 118

Query: 216 --------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
                    + +     Y GG+E +V +++R K+P+  S +          +++AM+WN 
Sbjct: 119 AEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHELEIAMQWNS 178

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + GDD REG  
Sbjct: 179 GYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIREGLA 238

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK IV K + ++ 
Sbjct: 239 AIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAVSSAQ 298

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    
Sbjct: 299 ARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMY 358

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           QAILPLRGKI+NVE+AR D++L + E+ ++ITA GT
Sbjct: 359 QAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGT 394


>gi|309253410|gb|ADO60720.1| gyrase subunit B [Micromonospora echinofusca]
          Length = 373

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 168/372 (45%), Positives = 241/372 (64%), Gaps = 8/372 (2%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ + + I + G ++   + N     PL   G + + TG+ V F P 
Sbjct: 3   GLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHNSKP-TPLEK-GESTDRTGSAVAFWPD 60

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFV 233
            D+F   DF++ T+  R++E++FLN  + I L+D+R PE      RE+T  YKGGI  FV
Sbjct: 61  PDVFETVDFDFQTIYRRIQEMAFLNRGLTIHLLDERVPEEEDGRQREVTFCYKGGIADFV 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R
Sbjct: 121 RHLNASKNPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFR 180

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+
Sbjct: 181 AALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVK 239

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L+  S+PGK
Sbjct: 240 SFVQRVCNEWLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGK 299

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E
Sbjct: 300 LADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNE 359

Query: 474 IGTLITALGTGI 485
           +  LITALGTGI
Sbjct: 360 VQALITALGTGI 371


>gi|322489879|emb|CBZ25140.1| mitochondrial DNA topoisomerase II [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1236

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 131/682 (19%), Positives = 251/682 (36%), Gaps = 64/682 (9%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
           DA   + L  +D V  RP MY+G  + +                       GL  ++ E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTSMYIFDPEKGKMVWETMRVNQGLLKIVDEI 62

Query: 49  LDNAIDESLEGYA----DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           L NA D             I++ ++  G  TV ++G G+P    +E  +   E++   L 
Sbjct: 63  LLNAADNITNSKGSVRQTYISINISDTGEITVENDGAGLPIVRSREHKMYIPEMVFGHLL 122

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--ILDNPLVVT 162
               +N  S   + G HG G  + N LS+   +  + +G  + MS+ +   +   P V  
Sbjct: 123 TSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVNR 182

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQISLIDKRSPE 217
                   T V F+P    F     +        L  R+ +L+ + S +++ L +     
Sbjct: 183 VDPKEKNVTRVKFMPDYAHFGFPSASISLDMKRVLHKRIMDLAAMFSKIEVRLNNVPFGF 242

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                        A +  L      +   P     S  +++    +  +    + ++   
Sbjct: 243 RSFTDY-------ARLYSLSGLDGSMPPEPFVYTSSNGSVAYVPQLTQS---PKRIVSVV 292

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N +   +GGTH +     L   + S  +    + K   +      +  FT ++ +    P
Sbjct: 293 NGVVTYNGGTHCNAAMDILDSCLDSLSKNFKKNGKVVDTNR---VQRHFTVLVFLVQAQP 349

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSA---WLEEHPLEAKIIVKKVLDASMVRDAARR 394
           +F SQ+K +LVS+     V     +       +LE H       +   L+  +       
Sbjct: 350 KFDSQSKARLVSTVTMPRVPKNTLEKYLERMPFLEAHVNSMDDQLTNELNKEIGAGRRLS 409

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAIL 451
           ++ L      L  A+                 L + EGDSA   A        ++   + 
Sbjct: 410 SKTLISSITKLVDATS------SRSDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVF 463

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNV      ++ + +E+  L  +LG  +G++   + +LRY ++++MTD D DG+
Sbjct: 464 PLRGKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRTLAELRYQRLLVMTDQDADGS 523

Query: 512 HIRTLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           HI+ L++  F    P L+ N  G++ +   P+  I      + V    S  D+   Q   
Sbjct: 524 HIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVNGKSKEVIAFHSFRDFHRWQRAH 583

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
                       +  +      +    ++K I     +      +  ++  VF+    + 
Sbjct: 584 PSARYTAKYYKGLGTSTTAEGKEYFADMEKNIMQLTVDAR----DHQLLDSVFDAAEVEW 639

Query: 630 INVSLASKLANRLNFIAEKSEK 651
               +    A +     ++S+K
Sbjct: 640 RKEWMTKANAFQGEIDIDRSKK 661


>gi|318066865|emb|CBY89144.1| DNA gyrase subunit B [Halomonas organivorans]
          Length = 349

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 200/352 (56%), Positives = 253/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R G ++E  + +G+   PL V G     TG+ V F PS + F  
Sbjct: 1   VSVVNALSEELKLTIWRNGQVHEQVYRHGVPQAPLGVVGKTE-QTGSRVHFKPSPETFHN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+ +K  L 
Sbjct: 60  IEFHYDVLAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAALTRSLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   L
Sbjct: 178 DAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|215271448|emb|CAR48213.1| gyrase B subunit [Vibrio cholerae]
          Length = 350

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 202/352 (57%), Positives = 268/352 (76%), Gaps = 3/352 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +F+YD
Sbjct: 1   LSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTFTNIEFHYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ +     
Sbjct: 60  ILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHF 118

Query: 251 QGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
              R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K   
Sbjct: 119 NQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGF 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L 
Sbjct: 179 SKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLA 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK +  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++
Sbjct: 239 ENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYI 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 299 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|62085692|gb|AAX63238.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 424

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 180/427 (42%), Positives = 252/427 (59%), Gaps = 39/427 (9%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++        ++  GS 
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGFHWEQTYNYAKP--GVLEKGSP 58

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS--------- 215
              TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R          
Sbjct: 59  TRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEAPGDA 118

Query: 216 -------------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
                                     +P+  T  Y  G+  ++ +L+R K+ +  + I  
Sbjct: 119 DGDEESTLTEAAEEIKSAEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIGY 178

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
            G      +++AM+WN  Y E+V  F N I   +GGTH  G R+ALT  +  Y  +    
Sbjct: 179 TGQGTGHEVEVAMQWNATYSESVHTFANTINTHEGGTHEEGFRAALTLTVNKYAVEKKFI 238

Query: 311 KKDKRS-VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           K  K   + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   ++ L  WLE
Sbjct: 239 KDKKEDRLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRVCSEHLGHWLE 298

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAK I+KK++++   R AAR ARDL RRK   DI  LPGKLADC   DP K E+++
Sbjct: 299 ANPAEAKTIIKKIVESQRARMAARNARDLVRRKTATDIGGLPGKLADCRSNDPGKCEVYI 358

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D 
Sbjct: 359 VEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDE 417

Query: 490 FDINKLR 496
           FDI+KLR
Sbjct: 418 FDISKLR 424


>gi|156946272|gb|ABU98324.1| DNA gyrase subunit beta [Alcanivorax dieselolei]
          Length = 352

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 203/355 (57%), Positives = 265/355 (74%), Gaps = 3/355 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  LKL I+R G ++E  + +G+ + PL V G     +GT + F PS   F+   F+Y
Sbjct: 1   ALSETLKLTIRRHGKVHEQVYHDGVPEKPLDVVG-TTESSGTTIRFRPSPATFNNIQFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V+I L+D+RS +       Y+GG+ AFV+YL+++K  L Q    
Sbjct: 60  DILAKRLRELSFLNSGVRIHLLDERSGDE--DVFEYEGGLSAFVTYLNQNKSSLNQVFHF 117

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                D I +++AM+WND Y EN+ C+TNNIPQ+DGGTHL+G R+ALTR + +Y+EK   
Sbjct: 118 QVDREDGIGVEVAMQWNDSYQENIYCYTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGF 177

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + +    +L 
Sbjct: 178 LKREKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMTERFQDFLL 237

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           EHP+E+K IV+K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++
Sbjct: 238 EHPVESKNIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYI 297

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG G
Sbjct: 298 VEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 352


>gi|157866980|ref|XP_001682045.1| mitochondrial DNA topoisomerase II [Leishmania major]
 gi|68125496|emb|CAJ03357.1| mitochondrial DNA topoisomerase II [Leishmania major strain
           Friedlin]
          Length = 1236

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 132/683 (19%), Positives = 250/683 (36%), Gaps = 64/683 (9%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
           DA   + L  +D V  RP MY+G  + +                       GL  ++ E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEI 62

Query: 49  LDNAIDESLEGYA----DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           L NA D             I + ++  G  TV ++G G+P    +E  +   E++   L 
Sbjct: 63  LLNAADNINNSKGSVRQTYINIHISDTGEITVENDGAGLPIVRSREHKMYIPEMVFGHLL 122

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--ILDNPLVVT 162
               +N  S   + G HG G  + N LS+   +  + +G  + MS+ +   +   P V  
Sbjct: 123 TSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVNR 182

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQISLIDKRSPE 217
                   T V F+P    F     +        L  R+ +L+ + S +++ L    +  
Sbjct: 183 VDPKEKNVTRVKFMPDYAHFGFPSASISLDMKRVLHKRVMDLAAMFSKIEVRLN---NVP 239

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
               T     G+ +                     +  N S+    +      + ++   
Sbjct: 240 FGFRTFTDYAGLYSLPGLDGSMPPEP------FVYTSPNGSVAYVPQLTQSP-KRIVSVV 292

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N +   +GGTH +     L   + S  +    + K   +      +  FT ++ +    P
Sbjct: 293 NGVVTYNGGTHCNAAMDILDACLDSLSKNFKKNGKVVDTNR---VQRHFTVLVFLVQAQP 349

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F SQ+K +LVS+     V     +       E     +  V  + D   + +   +   
Sbjct: 350 KFDSQSKARLVSTVTMPRVPKNTLEK----YLERMPFLEAHVNSMDD--QLTNELNKEIG 403

Query: 398 LTRRKGVLDIASLPGKLADCSERDPK---KSELFLVEGDSAGGSAKQ---GRSRENQAIL 451
             RR     + S   KL D +   P       L + EGDSA   A        ++   + 
Sbjct: 404 AGRRLSSKTLISSITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVF 463

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PLRGK+LNV      ++ + +E+  L  +LG  +G++     +LRY ++++MTD D DG+
Sbjct: 464 PLRGKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDADGS 523

Query: 512 HIRTLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           HI+ L++  F    P L+ N  G++ +   P+  I      +      S  D+   Q   
Sbjct: 524 HIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEAIAFHSFRDFHRWQRAH 583

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
                       +  +      +    ++K +     +      +  ++  VF+    + 
Sbjct: 584 PSARYTAKYYKGLGTSTTAEGKEYFADMEKNVMQLTVDAR----DHQLLDSVFDAAEVEW 639

Query: 630 INVSLASKLANRLNFIAEKSEKS 652
               +    A +     ++S+K+
Sbjct: 640 RKEWMTKANAFQGEVDIDRSKKT 662


>gi|159576544|dbj|BAF92821.1| DNA gyrase subunit B [Halobacillus sp. IS-Hb8]
          Length = 325

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 221/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+G I+  S+  G+ +  L V G   + TGT +
Sbjct: 1   YKVFGGLHGVGASVVNALSTKLEVFVHRDGQIHYQSYKRGVPEEDLKVVGET-DQTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF     + ++ L +RLREL+FLN  + I++ DKR+ E       Y+GGI ++
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDEDPVDYY-YEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ +      I+G +D ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTREAIH-DAFFIEGEQDEISIEIAMQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNSMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V ++  ++  S +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|148762399|dbj|BAF63901.1| DNA gyrase subunit B [Halobacillus sp. S19-p]
          Length = 325

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 221/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+G I+  S+  G+ +  L V G   + TGT +
Sbjct: 1   YKVYGGLHGVGASVVNALSTKLEVFVHRDGQIHYQSYKRGVPEEDLKVVGET-DQTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF     + ++ L +RLREL+FLN  + I++ DKR+ E       Y+GGI ++
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDEDPVDYY-YEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ +      I+G +D ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTREAIH-DAFFIEGEQDEISIEIAMQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNSMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V ++  ++  S +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|170177824|gb|ACB10238.1| GyrB [Aeromonas aquariorum]
          Length = 348

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 208/351 (59%), Positives = 266/351 (75%), Gaps = 3/351 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGR 348


>gi|269799062|gb|ACZ43809.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 316

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 174/318 (54%), Positives = 230/318 (72%), Gaps = 4/318 (1%)

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I R G+I++  + +G    P+ 
Sbjct: 1   TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIA 60

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
           V G   + TGTE+ F PS + F+   F+YD L  RLRELSFLNS V I LID+R  + + 
Sbjct: 61  VIGDI-DTTGTELRFWPSHETFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKS 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNN 279
               Y+GGI+AFV YL+ +K P+ +        R++ I++++AM+WNDG+ E + CFTNN
Sbjct: 119 DHFVYEGGIKAFVDYLNVNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNN 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPR 338
           IPQ+DGGTHL+G R ALTR + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+
Sbjct: 179 IPQRDGGTHLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPK 238

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEV+S VE  + + L+ +L E+P EA  +V K++DAS  R+AAR+AR++
Sbjct: 239 FSSQTKDKLVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREM 298

Query: 399 TRRKGVLDIASLPGKLAD 416
           TRRKG LD+A LPGKLAD
Sbjct: 299 TRRKGALDLAGLPGKLAD 316


>gi|297515929|gb|ADI44315.1| gyrase B [Micromonospora sp. FXJ6.011]
          Length = 372

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 167/374 (44%), Positives = 238/374 (63%), Gaps = 8/374 (2%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ + + I + G ++   + +      L   G   + TG+ V+F 
Sbjct: 1   SGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHHSKP-TELEK-GETTDRTGSAVSFW 58

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEA 231
           P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y GGI  
Sbjct: 59  PDPDVFETVDFDFQTIYRRLQEMAFLTRGLTIHLLDERVPEGEEGKTREVTFRYDGGIAD 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+  K P+ ++ +      D +S+++AM+WN+ Y E+V  F NNI   +GGTH  G
Sbjct: 119 FVRHLNASKNPIHKTVVEFGAEEDGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ 
Sbjct: 179 FRAALTGIVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTP 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S V+   ND L  W + +P EAK I+ K   A+  R AA++AR L RRK +L+  S+P
Sbjct: 238 VKSFVQRVCNDRLVDWFDRNPAEAKTIITKASQAARARIAAQQARKLARRKSLLESGSMP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L +
Sbjct: 298 GKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKN 357

Query: 472 QEIGTLITALGTGI 485
            E+  LITALGTGI
Sbjct: 358 NEVQALITALGTGI 371


>gi|154334646|ref|XP_001563570.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134060591|emb|CAM42140.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1239

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 132/692 (19%), Positives = 248/692 (35%), Gaps = 52/692 (7%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
           DA   + L  +D V  RP MY+G  + +                       GL  ++ E+
Sbjct: 3   DASKYKKLSPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGKMVWETMRVNQGLLKIVDEI 62

Query: 49  LDNAIDESLEGYA----DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           L NA D             I+++++  G  TV ++G G+P    +E  I   E++   L 
Sbjct: 63  LLNAADNINNSKGSVRQTYISISISDTGEITVENDGAGLPIVRSREHKIYIPEMVFGHLL 122

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--ILDNPLVVT 162
               +N  S   + G HG G  + N LS+   +  +  G  + MS+ +   +   P V  
Sbjct: 123 TSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVICRTAGREFHMSWTDHMRMATAPRVSR 182

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                   T V F+P    F   + +      R+     ++ +       K       + 
Sbjct: 183 VDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMF---SKIEVRLNNVP 239

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             ++   +    Y              +  S  N S+    +      + ++   N +  
Sbjct: 240 FGFETFTDYARLYSLPGPNGSTPPEPFVHTS-PNGSVAYVPQLTQSP-KRIVGVVNGVVT 297

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH +     L   + S        K+ K        +  FT ++ +    P+F SQ
Sbjct: 298 YNGGTHCNAAIDILDSCLDSL--SRNFKKEGKVVDTNR-VQRHFTVLVFLIQAQPKFDSQ 354

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           +K +LVS+     V     +    +LE  P     +       +   +    A      K
Sbjct: 355 SKARLVSTVTMPRVPKNTLEK---YLETMPFLEAHVNSMDDQLANELNKEIGAGRRLSSK 411

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLRGKILN 459
            ++   +                 L + EGDSA   A        ++   + PLRGK+LN
Sbjct: 412 TLISSITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSDQKKYCGVFPLRGKLLN 471

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V      ++   +E+  L  ALG  +G++    ++LRY ++++MTD D DG+HI+ L++ 
Sbjct: 472 VRNKNLKRLKMCKELQDLFLALGLELGKEYRTPDELRYQRLLVMTDQDADGSHIKGLVIN 531

Query: 520 FFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
            F    P+L+ N  G++ +   P+  I      + V    SL D+   Q           
Sbjct: 532 AFESLWPTLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSLRDFHRWQRAHPTARYTAK 591

Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637
               +  +      +    ++K I            +  ++  VF+    +     +   
Sbjct: 592 YYKGLGTSTTAEGKEYFADMEKNIMRLT----VDAKDHQLLDSVFDAAEVEWRKEWMTKA 647

Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
            A +     ++S+K    S+   + + K +  
Sbjct: 648 NAFQGEIDIDRSKK----SLTIPEFVHKEMVH 675


>gi|106895929|gb|ABE96860.1| DNA gyrase subunit B [Aeromonas sp. MDC78]
          Length = 348

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 207/351 (58%), Positives = 266/351 (75%), Gaps = 3/351 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGR 348


>gi|323146984|gb|ADX32785.1| DNA gyrase B subunit [endophytic bacterium 18(2011)]
 gi|323146992|gb|ADX32789.1| DNA gyrase B subunit [endophytic bacterium 22(2011)]
 gi|323147000|gb|ADX32793.1| DNA gyrase B subunit [endophytic bacterium 20(2011)]
          Length = 238

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 107/241 (44%), Positives = 155/241 (64%), Gaps = 19/241 (7%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEV 98
           H+++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE+
Sbjct: 1   HLVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEI 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--- 155
           +MT LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+    
Sbjct: 61  VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNR 120

Query: 156 ---------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                     +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V
Sbjct: 121 VIEEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           +I L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM+WN
Sbjct: 180 RIRLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQWN 237

Query: 267 D 267
           D
Sbjct: 238 D 238


>gi|318066827|emb|CBY89125.1| DNA gyrase subunit B [Halomonas aquamarina]
 gi|318066829|emb|CBY89126.1| DNA gyrase subunit B [Halomonas axialensis]
 gi|318066861|emb|CBY89142.1| DNA gyrase subunit B [Halomonas meridiana]
          Length = 349

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 197/352 (55%), Positives = 256/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I R+G ++E  + +G+   PL V G     +GT V F PS   F+ 
Sbjct: 1   VSVVNALSEELRLTIWRQGEVFEQIYHHGVPQAPLSVVGKTE-KSGTRVHFRPSPATFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+++K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFVDHLNKNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                  G  D + +++AM+W+D + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFNAGRDDGVEVEVAMQWSDAFTENIFCYTNNIPQRDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP +
Sbjct: 238 ADYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSQ 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|207107896|dbj|BAG71960.1| DNA gyrase subunit B [Gordonia desulfuricans]
          Length = 413

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 177/416 (42%), Positives = 245/416 (58%), Gaps = 40/416 (9%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ +++ I R+G  +  +F +      L V G A   TGT V F P   IF+
Sbjct: 1   GISVVNALSTKVEVEIARDGYNWAETFTDSKP-GEL-VQGDATRKTGTTVRFWPDPSIFT 58

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216
               FN +T+  RL+E++FLN  + I+L D R                            
Sbjct: 59  ETTAFNAETVARRLQEMAFLNKGLTITLTDNRPKAVEVPGDPNGDAETGEGGPDTAEAVK 118

Query: 217 ----------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                     +P+  T  Y  G+  ++ +++R K  + +S I   G      +++AM+WN
Sbjct: 119 SEEEKKVAASKPKTRTYHYPDGLVDYIKHINRTKTAIHKSVIGFTGKGTGHEVEIAMQWN 178

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           DGY E+V  F N I   +GGTH  G R+ALTR + SY       K+   ++ GDD REG 
Sbjct: 179 DGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYARDKKLLKEKDSNLTGDDIREGL 238

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +V+S+K+ +P+F  QTK KL ++EV+S V+    + L  W E +P EAK+IV K +D++
Sbjct: 239 AAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKASGEHLEHWFEANPAEAKVIVNKAVDSA 298

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AAR+ARDL RRK   DI  LPGKLADC   DP K E++LVEGDSAGGSAK GR   
Sbjct: 299 HARLAARKARDLVRRKSATDIGGLPGKLADCRSNDPSKCEVYLVEGDSAGGSAKTGRDSM 358

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
            QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 YQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKLRYHKIVL 413


>gi|60459496|gb|AAX20084.1| DNA gyrase subunit B [Leptospira interrogans serovar Bataviae]
 gi|60459498|gb|AAX20085.1| DNA gyrase subunit B [Leptospira interrogans serovar
           Hardjo-prajitno]
          Length = 143

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/144 (52%), Positives = 105/144 (72%), Gaps = 1/144 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGILDNPLV 160
           + + ++G +Y   +  G+  + + 
Sbjct: 120 VEVHQKGKVYTQKYEKGVPVSSVQ 143


>gi|148971305|gb|ABR20190.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 440

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 163/441 (36%), Positives = 239/441 (54%), Gaps = 21/441 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGIL 155
           EVIMT LHAGGKF+ + Y  SGGLHGVGVSVV AL+S L+ ++ RE    + +++  G L
Sbjct: 1   EVIMTVLHAGGKFDGEVYDYSGGLHGVGVSVVCALASRLEAQVWRETEGSFTIAYEQGKL 60

Query: 156 DNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             PL    GS  +  GT + F P  +IF     ++D +  R R  ++L   +++ +ID R
Sbjct: 61  VQPLRKRPGSKAHPHGTRIKFWPDPEIFGDAVVDFDAVLERCRSKAYLIPGLRVDVIDHR 120

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLM-----------------QSPIRIQGSRDNI 257
              P + T   + G+   + +L  +                         IR Q      
Sbjct: 121 LDPPVKHTYTSRNGLVDLLGHLANNPLHKPIIIEGEGTYEETVQVLGDDGIRAQNMERTG 180

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            ++LA+ W  GY        N +    GGTHL+GL  AL+R +    E S   K    S 
Sbjct: 181 RLELALVWTGGYETQFQLAVNQVTTPRGGTHLTGLNQALSRVVVKAAEGSRVKKAKDPSP 240

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE-HPLEAK 376
             DD  EG   V+ +++P+P+F+ Q KE+L + +   +V   V   L+ W E       +
Sbjct: 241 NKDDVMEGLCLVMHLQIPEPQFNGQAKEELGTPQAHQLVYQIVARELAKWFETAPRTHVR 300

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           ++++KV+ A+  RDAARR+RD+ R+K    + +LP KL+D     P++SEL +VEGDSA 
Sbjct: 301 VVLEKVMAAARARDAARRSRDMARKKDRNQVLALPAKLSDSYRHYPEESELLIVEGDSAA 360

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           G AK GR +  QA+LP+RGKILN  RA    + S+ E+  + +ALG   G    D  + R
Sbjct: 361 GPAKAGRDQRFQAVLPIRGKILNAARASAHNLASNAEVTAIFSALGLQPGPKC-DPEQRR 419

Query: 497 YHKIIIMTDADVDGAHIRTLL 517
           Y +++IMTDADVDG+HIRTLL
Sbjct: 420 YTRVVIMTDADVDGSHIRTLL 440


>gi|148762391|dbj|BAF63897.1| DNA gyrase subunit B [Halobacillus sp. S3-2]
          Length = 325

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 221/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+G I+  S+  G+ +  L V G   + TGT +
Sbjct: 1   YKVFGGLHGVGASVVNALSTKLEVFVHRDGEIHYQSYKRGVPEEDLKVIGET-DKTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF     + ++ L +RLREL+FLN  + I++ DKR+ E       Y+GGI ++
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDEDPVDYY-YEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ +      I+G +D ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTREAIH-DAFFIEGEQDEISIEIAMQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V ++  ++  S +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|106895895|gb|ABF82648.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 348

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 205/351 (58%), Positives = 266/351 (75%), Gaps = 3/351 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGR 348


>gi|294963340|gb|ADF50157.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 353

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 163/355 (45%), Positives = 246/355 (69%), Gaps = 3/355 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FN 188
           ALS+ L++ + REG I+   +  GI    L V G   + TGT   F P  +IF     + 
Sbjct: 1   ALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETIVYE 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +DTL  R+REL+FLN ++++++ DKR  + ++    Y+GGI+++V +L+R K+P+ + P+
Sbjct: 60  FDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEEPV 118

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            ++GS+D I +++A+++N+GY  ++  FTNNI   +GGTH  G ++ALTR I  Y  K+ 
Sbjct: 119 YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNN 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K    ++ G+D REG T+++SIK P+P+F  QTK KL +SE R++ ES  ++    +L
Sbjct: 179 ILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P  A+ I+ K   A+  R AA++AR+LTRRK  L+++SLPGKLADCS +DP  SE++
Sbjct: 239 LENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIY 298

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           +VEGDSAGGSAKQGR R  QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT
Sbjct: 299 IVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGT 353


>gi|312599337|gb|ADQ91360.1| hypothetical protein BpV2_193c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 1073

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 132/660 (20%), Positives = 239/660 (36%), Gaps = 63/660 (9%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDG--------ESG------------LHHMIYEVLDNA 52
           +SIQ L  ++ + KRP  Y+G            E+G            L  +  E+L NA
Sbjct: 3   ESIQKLTHVEHILKRPDSYVGPVSRVAEPYWIYENGSFEKKTVMYSPALLKIFDEILVNA 62

Query: 53  IDESLEGYADIIT---VTLNMD-GSCTVSDNGR--GIPTDLHKEEGISAAEVIMTRLHAG 106
           ID +   Y   +T   V+++   G  T+ +NG   GI   +H++EG+   E+    L   
Sbjct: 63  IDRNSM-YPKNVTSMSVSIDKTSGQITIENNGPLGGIAVKMHEKEGLWNPELTFGHLLTS 121

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN---IYEMSFINGILDNPLVVTG 163
             ++    ++ GG +G G  + N  SS   ++IK +G    IY   + + +         
Sbjct: 122 TNYDDTQKRLVGGRNGYGAKLTNVYSSMFSIKIK-DGENKCIYTQEWSDNMRTCGTPKIK 180

Query: 164 SAGNDTGT-EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
              N T +  +TF+P    F +   +    +   + +   N           + +  ++ 
Sbjct: 181 KYSNATSSVSITFVPDWKRFGMSKMDDSIYKIFEKRVYDANI---------CTSQNCKVK 231

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
                  +A  +   +               R ++ I  +   +DG+    + F N I  
Sbjct: 232 FQGDALPKATFNTYAKMYTKS-DEICTFTSDRWSVCIAPS---DDGFEH--VSFVNGICT 285

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
             GG+H+  +   L   I   + K       K  +     +  F   +   + +P FSSQ
Sbjct: 286 TKGGSHVDHVSGILANGIIEDMAK-------KIKLRPQQVKNAFFVFVKATLVNPSFSSQ 338

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            K +          + F +           +    I  +++  S  R+     +    RK
Sbjct: 339 VKSECTLKP-----QDFGSKFEPPKTFIKNILKTGIQSELMALSKFREMKELKKTDGSRK 393

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILN 459
             +                  K  L + EGDSA   A  G S   R++  + PLRGK  N
Sbjct: 394 SKITGIPKLDDANKAGTTHSGKCTLIVTEGDSAKTLAIAGLSVVGRDHYGVFPLRGKCKN 453

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           V  A   ++  ++E   L   LG   G+    +++LRY +++IMTDAD DG+HI+ L+L 
Sbjct: 454 VRDASVKQLTENKEFNDLKKILGLQQGKVYTSLSELRYGRLMIMTDADNDGSHIKGLILN 513

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
                 PSL+   F+  +  P+   T+G   +    + +   +        +I+ +    
Sbjct: 514 MIHYFWPSLLKLNFVVSMVTPIIKATKGSETKSFYTDSTFRQWYGTGKAGWKIKYYKGLG 573

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
              S    R +      +           +   +               E     AS+L 
Sbjct: 574 TSTSVEA-REYFKKIKDLTVQFDTDDSMDESIILAFDKTKSDLRKTWLLESTEKKASELE 632


>gi|106895890|gb|ABF82647.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 349

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 206/352 (58%), Positives = 267/352 (75%), Gaps = 3/352 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 349


>gi|15551725|emb|CAC69392.1| DNA gyrase B subunit [Enterobacter aerogenes]
          Length = 323

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 181/326 (55%), Positives = 240/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+  +++  + +G+   PL VTG    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQIYEHGVPQAPLAVTGETE- 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+
Sbjct: 60  STGTMVRFWPSLETFTSVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D IS+++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGISVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD
Sbjct: 238 LVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|318066809|emb|CBY89116.1| DNA gyrase subunit B [Chromohalobacter israelensis]
 gi|318066815|emb|CBY89119.1| DNA gyrase subunit B [Chromohalobacter salexigens]
          Length = 349

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 204/352 (57%), Positives = 257/352 (73%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL + R G +YE  + +G+ D+PL V G     +GT+V F PS++ F+ 
Sbjct: 1   VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTE-KSGTQVNFKPSTETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I LID+RS    E    Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLIDERSG--AEELFHYEGGLRAFVDHLNTNKTALN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I++++AM+WND + EN+ C+TNNIPQ DGGTHL+G R+ALTR +  Y+
Sbjct: 118 QIFHFETQRDDGIAVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 ESEGLLKKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|148762397|dbj|BAF63900.1| DNA gyrase subunit B [Halobacillus sp. S19-3]
          Length = 325

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 150/328 (45%), Positives = 220/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+G I+  S+  G+ +  L V G   + TGT +
Sbjct: 1   YKVYGGLHGVGASVVNALSTKLEVFVHRDGEIHYQSYKRGVPEEDLKVIGET-DKTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF     + ++ L +RLREL+FLN  + I++ DKR+ E       Y+GGI ++
Sbjct: 60  HFIPDDEIFKETQEYKFEILANRLRELAFLNKGLTITIEDKRTDEDPVDYY-YEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ +      I+G +D ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTREAIH-DAFFIEGEQDEISIEIAMQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LT  I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTHVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V ++  ++  S +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|170177822|gb|ACB10237.1| GyrB [Aeromonas aquariorum]
          Length = 347

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 208/350 (59%), Positives = 265/350 (75%), Gaps = 3/350 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG 347


>gi|15551717|emb|CAC69400.1| DNA gyrase B subunit [Klebsiella pneumoniae]
          Length = 323

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 181/326 (55%), Positives = 240/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+  +++  + +G+   PL VTG   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-D 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+
Sbjct: 60  KTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD
Sbjct: 238 LVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|311788332|gb|ADQ12753.1| GyrB [Micromonospora narathiwatensis]
          Length = 371

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 167/373 (44%), Positives = 238/373 (63%), Gaps = 8/373 (2%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ + + I ++G ++   +       PL   G   + TG+ V+F 
Sbjct: 1   SGGLHGVGVSVVNALSTKMAVEIHKDGFVWRQQYHQSKP-TPLEK-GEPTDRTGSAVSFW 58

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEA 231
           P  D+F    F++ T+  RL+E++FL   + I L+D+R  E     PRE+T  Y GGI  
Sbjct: 59  PDPDVFETVVFDFQTIYRRLQEMAFLTRGLTIHLLDERVEETEEGKPREVTFHYDGGIAD 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+  K P+ ++ +      + +S ++AM+WN+ Y E+V  F NNI   +GGTH  G
Sbjct: 119 FVRHLNASKNPIHRTVVEFGAEEEGMSAEIAMQWNESYGESVYTFANNINTHEGGTHEEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ 
Sbjct: 179 FRAALTTVVNRYGA-EKKLLKGDERLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTP 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S V+   N+ L  W + +P EAKII+ K   A+  R AA++AR L RRK +L+  S+P
Sbjct: 238 VKSFVQRVCNESLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L +
Sbjct: 298 GKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKN 357

Query: 472 QEIGTLITALGTG 484
            E+  LITALGTG
Sbjct: 358 NEVQALITALGTG 370


>gi|60459502|gb|AAX20087.1| DNA gyrase subunit B [Leptospira interrogans serovar Szwajizak]
          Length = 142

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/142 (53%), Positives = 105/142 (73%), Gaps = 1/142 (0%)

Query: 16  QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCT 75
           +IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    
Sbjct: 1   KILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVE 59

Query: 76  VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWL 135
           V DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L
Sbjct: 60  VKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYL 119

Query: 136 KLRIKREGNIYEMSFINGILDN 157
           ++ + ++G +Y   +  GI  +
Sbjct: 120 EVEVHQKGKVYTQKYEKGIPVS 141


>gi|62084048|dbj|BAD91403.1| DNA gyrase B subunit [Shewanella baltica]
 gi|62084050|dbj|BAD91404.1| DNA gyrase B subunit [Shewanella baltica]
 gi|62084052|dbj|BAD91405.1| DNA gyrase B subunit [Shewanella baltica]
 gi|62084054|dbj|BAD91406.1| DNA gyrase B subunit [Shewanella morhuae]
          Length = 358

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 207/360 (57%), Positives = 274/360 (76%), Gaps = 4/360 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L++ I+R G +YE  + +G+ D P+   G A   TGTE+ F PS + FS  +F++
Sbjct: 1   ALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSENTFSNIEFHF 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  R+RELSFLNS V I LID+R  +       Y+GGI AFV YL+R+K P+ +    
Sbjct: 60  EILAKRVRELSFLNSGVGIRLIDERDNKN--ELFKYEGGISAFVDYLNRNKTPINKDVFH 117

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               RD+ I++++AM+WNDGY E++ CFTNNIPQ+DGGTHL G RSALTR + SY+E   
Sbjct: 118 FIQERDDGITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L
Sbjct: 178 YNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P +AK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE++
Sbjct: 238 LENPSDAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D
Sbjct: 298 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 357


>gi|60459484|gb|AAX20078.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni]
          Length = 142

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/143 (52%), Positives = 105/143 (73%), Gaps = 1/143 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGILDNPL 159
           + + ++G +Y   +  G+  + +
Sbjct: 120 VEVHQKGKVYTQKYEKGVPVSSV 142


>gi|2196822|gb|AAB80828.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 211/407 (51%), Positives = 283/407 (69%), Gaps = 22/407 (5%)

Query: 97  EVIMTRLHAG--GKFNQ-KSY------KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
           EVIMT   AG   K N   +Y      +V          VVNALS  L++ I+R G +YE
Sbjct: 1   EVIMTVPRAGVNSKINTTDAYVDRSRIRVP---------VVNALSKKLQMTIRRAGKVYE 51

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
             + +G+ D P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V 
Sbjct: 52  QFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVG 110

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWN 266
           I L+++R  +       Y+GGI AFV YL+R+K  + +        R++ I++++AM+WN
Sbjct: 111 IRLVEERDNKN--EFFKYEGGISAFVDYLNRNKTFVNKDVCPFMQEREDGITVEVAMQWN 168

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           DGY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG 
Sbjct: 169 DGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGL 228

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+
Sbjct: 229 TAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAA 288

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R+AAR+AR++TRRKG LD+  LPGK+ADC E+DP  SE+++VEGD A GS KQGR+R+
Sbjct: 289 RAREAARKAREMTRRKGALDLGGLPGKMADCQEKDPGLSEIYIVEGDFACGSGKQGRNRK 348

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           NQAILPL+GKILNVE+ARFDK L  QE+ TLITA+G GIG    D +
Sbjct: 349 NQAILPLKGKILNVEKARFDKKLFFQEVATLITAIGCGIGGSYHDRS 395


>gi|297515925|gb|ADI44313.1| gyrase B [Micromonospora sp. RtII141]
          Length = 370

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 165/373 (44%), Positives = 241/373 (64%), Gaps = 8/373 (2%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ + + I+++G  +   + N    +PL   G    +TG+ V+F 
Sbjct: 1   SGGLHGVGVSVVNALSTRMAVEIQKDGFFWRQQYTNSKP-SPLEK-GEPTENTGSAVSFW 58

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEA 231
           P   +F   +F++ T+  RL+E++FL   + I L+D+R       + RE+T  Y+GGI  
Sbjct: 59  PDPAVFETVEFDFQTIYRRLQEMAFLTRGLTIHLLDERVAEDEDGKTREVTFHYEGGIAD 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+  K P+ ++ +        +S+++AM+WN+ Y E+V  F NNI   +GGTH  G
Sbjct: 119 FVRHLNASKNPIHKTVVEFGAEEAGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  +  Y  +     K    + G+D REG  +++S+K+ DP+F  QTK KL ++ 
Sbjct: 179 FRAALTSVVNRYGTERK-LLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTP 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+  V+   N+ L  W + +P EAKII++K   A+  R AA++AR L RRK +L+  S+P
Sbjct: 238 VKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L +
Sbjct: 298 GKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKN 357

Query: 472 QEIGTLITALGTG 484
            E+  LITALGTG
Sbjct: 358 NEVQALITALGTG 370


>gi|60459480|gb|AAX20076.1| DNA gyrase subunit B [Leptospira interrogans serovar Canicola]
          Length = 142

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 76/143 (53%), Positives = 105/143 (73%), Gaps = 1/143 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGILDNPL 159
           + + ++G +Y   +  GI  + +
Sbjct: 120 VEVHQKGKVYTQKYERGIPVSSV 142


>gi|170177814|gb|ACB10233.1| GyrB [Aeromonas aquariorum]
          Length = 348

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 207/351 (58%), Positives = 265/351 (75%), Gaps = 3/351 (0%)

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RLR
Sbjct: 1   TIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLR 59

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           ELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I
Sbjct: 60  ELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 117

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K + 
Sbjct: 118 GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAA 177

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI
Sbjct: 178 SGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKI 237

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGG
Sbjct: 238 VVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGG 297

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           SAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+ 
Sbjct: 298 SAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRT 348


>gi|193788059|dbj|BAG50530.1| DNA gyrase subunit B [bacterium GMW-31]
 gi|193788061|dbj|BAG50531.1| DNA gyrase subunit B [bacterium GMW-33]
 gi|193788063|dbj|BAG50532.1| DNA gyrase subunit B [bacterium GMW-35]
 gi|193788067|dbj|BAG50534.1| DNA gyrase subunit B [bacterium GMW-38]
          Length = 347

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 203/349 (58%), Positives = 265/349 (75%), Gaps = 2/349 (0%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLREL
Sbjct: 1   RRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLREL 60

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I +
Sbjct: 61  SFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGV 118

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  G
Sbjct: 119 EVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASG 178

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V
Sbjct: 179 DDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVV 238

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSA
Sbjct: 239 NKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 298

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           KQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D
Sbjct: 299 KQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 347


>gi|148762367|dbj|BAF63885.1| DNA gyrase subunit B [Halobacillus litoralis]
          Length = 325

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 224/328 (68%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+GNI+  ++  G+ +  L V G   + TGT +
Sbjct: 1   YKVCGGLHGVGASVVNALSTKLEVFVHRDGNIHYQAYHRGVPEEDLKVIGET-DQTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IFS  + + ++ L +RLREL+FLN  + I++ DKR+ E   +  +++GGI ++
Sbjct: 60  QFKPDPEIFSETEEYKFEILANRLRELAFLNKGLTITIEDKRTDEEP-VNYYFEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ L      I+  +D ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTRETLH-DAFFIEDEQDEISIEIAMQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V +S  ++  + +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDSLFSESFTKFLFENPNMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|317499299|ref|ZP_07957572.1| hypothetical protein HMPREF0996_02556 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893468|gb|EFV15677.1| hypothetical protein HMPREF0996_02556 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 411

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 187/409 (45%), Positives = 252/409 (61%), Gaps = 2/409 (0%)

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++YL++ K+ L    I  +G +D + +++A + ND Y+E  L F NNI   +GGTHLSG 
Sbjct: 1   MTYLNKGKEALYPDVIYCEGEKDGVYVEVAFQHNDSYNETSLSFVNNIITPEGGTHLSGF 60

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           + ALT     Y  K+   K+ + ++ G+D REG TSV+SIK+ +P+F  QTK+KL +SE 
Sbjct: 61  KMALTSTFNDYARKNNLLKEKEDNLSGEDIREGLTSVISIKIGEPQFEGQTKQKLGNSEA 120

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R  V S +++ L  +LE++P  AKII +K + A   RDAAR+ARDLTRRK  LD  SLPG
Sbjct: 121 RGAVNSILSEQLKYFLEQNPQVAKIICEKAVLAQRARDAARKARDLTRRKTALDGMSLPG 180

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADCS+++P+  E+++VEGDSAGGSAK  RSR  QAILPLRGKILNVE+AR DK+L ++
Sbjct: 181 KLADCSDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKVLVNK 240

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI  +ITA GTGI +D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI  G
Sbjct: 241 EIQAMITAFGTGIHED-FDIEKLRYHKIIIMTDADVDGAHIATLLLTFIYRFMPELIKKG 299

Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFI 591
           ++Y+ +PPLY + + K   Y   +E L + L                 G +    L +  
Sbjct: 300 YVYLAQPPLYRVEKNKKFWYAYSDEELNNILQEIGRDNNNKIQRYKGLGEMDAEQLWDTT 359

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640
            D  K   L  +   +                 E  +E   + A  + N
Sbjct: 360 MDPEKRILLRVNLDEDSASEIDLTFTTLMGDQVEPRREFIEANAKYVQN 408



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSL 707
            G   + DI   R  + +      ++G+ I +    +  R     I++ Y+      L  
Sbjct: 251 TGIHEDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFIYRFMPELIKKGYVYLAQPPLYR 310

Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +    K         L + +  IGR   + +QRYKGLGEM+A QLW+TT++P+ R LLRV
Sbjct: 311 VEKNKKFWYAYSDEELNNILQEIGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEKRILLRV 370

Query: 766 KITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
            + +  AS+ D  F+ LMGD+VEPRREFI+ N+     LDI
Sbjct: 371 NLDEDSASEIDLTFTTLMGDQVEPRREFIEANAKYVQNLDI 411


>gi|302122544|gb|ADK92940.1| DNA gyrase subunit B [Geobacillus sp. 46]
          Length = 347

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 165/347 (47%), Positives = 233/347 (67%), Gaps = 3/347 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FN 188
           ALS WL++ + R+G I+   +  G     L V G   + TGT   F P  +IF+    F+
Sbjct: 2   ALSEWLEVYVYRDGKIHYQKYERGQPCTDLQVIGET-DRTGTTTRFKPDPEIFTETTEFD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V +L+R ++ L + PI
Sbjct: 61  YETLAARLRELAFLNRGLKITLTDERVDNRKSEYF-YEGGIRSYVRHLNRTREVLHEEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG + ALTR I  Y  K  
Sbjct: 120 YIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQ 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K +  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++  ++    +L
Sbjct: 180 IFKDNDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFL 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            EHP  A+ IV+K + A+  R AA++AR+LTRRK  L++++LPGKLADCS RDP  SEL+
Sbjct: 240 LEHPTIARKIVEKGMMAARARLAAKKARELTRRKSALEVSNLPGKLADCSSRDPSISELY 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           +VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ 
Sbjct: 300 IVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARIDKILSNNEVR 346


>gi|330896905|gb|AEC48371.1| gyrase B [Streptomyces macrosporeus]
          Length = 394

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 172/392 (43%), Positives = 250/392 (63%), Gaps = 20/392 (5%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ + + +K +G+ +   +  G+   PL     A  +TGT VTF 
Sbjct: 1   SGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLAR-HEATEETGTSVTFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPRE 220
              DIF   D++++TL  R +E++FLN  ++I+L D+R                  E + 
Sbjct: 60  ADGDIFETTDYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVKS 119

Query: 221 ITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFT 277
           ++  Y+GGI  FV Y   R  + +  + I ++      ++S+++AM+WN GY E V  F 
Sbjct: 120 VSYHYEGGIVDFVKYLNSRKGELVHPTVIDLEAEDRDRHLSLEVAMQWNSGYTEGVYSFA 179

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GGTH  G R+ALT  I  Y       +    ++ GDD REG T+++S+K+ +P
Sbjct: 180 NIIHTHEGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGLTAIISVKLAEP 239

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL ++EV++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARD
Sbjct: 240 QFEGQTKTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIIRKGIAAATARVAARKARD 299

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           LTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKI
Sbjct: 300 LTRRKGLLESASLPGKLSDCQSNDPVKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKI 359

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           LNVE+AR D++L +QEI  +I+A GTG+ +D 
Sbjct: 360 LNVEKARIDRILQNQEIQAMISAFGTGVHEDF 391


>gi|60459490|gb|AAX20081.1| DNA gyrase subunit B [Leptospira alexanderi serovar Manzhuang]
 gi|60459492|gb|AAX20082.1| DNA gyrase subunit B [Leptospira alexanderi serovar Mengla]
          Length = 142

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 106/143 (74%), Gaps = 1/143 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  +    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPNNIIEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGILDNPL 159
           + + ++G IY   +  GI  +P+
Sbjct: 120 VEVHQKGKIYTQKYEKGIPVSPV 142


>gi|118201816|gb|ABK79721.1| DNA gyrase subunit b [Sulfitobacter guttiformis]
          Length = 356

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 207/357 (57%), Positives = 267/357 (74%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LR+ R+G+ +   F  G     L   G   + TGTEV FL S   FS  +++
Sbjct: 1   NALSDWLELRVWRDGHEHIARFEGGYTTKHLETLGKT-DRTGTEVRFLASLSTFSNLEYS 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  E  E  ++Y GG++ FV YLDR+K  ++  PI
Sbjct: 60  FETLEKRLRELAFLNSGVKIILRDERPDEALETVLYYDGGVKEFVKYLDRNKSSILPEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR I +Y + S 
Sbjct: 120 FITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRTINNYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE  VN+ L+ W 
Sbjct: 180 IAKREKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLAEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AKI+V K+++A+  R+AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 EENPQIAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|161622384|ref|YP_001595132.1| gp39 topoisomerase II large subunit N-terminal region
           [Enterobacteria phage JS98]
 gi|160213690|gb|ABX11029.1| gp39 topoisomerase II large subunit N-terminal region
           [Enterobacteria phage JS98]
          Length = 605

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 150/605 (24%), Positives = 240/605 (39%), Gaps = 63/605 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGD----------------TDGESGLHHMIYEVLDNAIDESLE 58
           I++L  ++ +KKR  MYIG                  +   GL  +I E++DN++DE++ 
Sbjct: 6   IKVLSDIEHIKKRSGMYIGSSANEAHGRFLFGNFTQVNYVPGLVKLIDEIIDNSVDEAIR 65

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE---EGISAAEVIMTRLHAGGKFNQK 112
               +A+ I V +  +   +VSDNGRGIP  +  +   E I       T   AGG F   
Sbjct: 66  TNFKFANKIDVQI-KNNQVSVSDNGRGIPQAMVTDQNGEQIPGPVAAWTIPKAGGNFGDD 124

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           + + +GG++GVG S+ N  S           N   ++  NG+ +       S G   GT 
Sbjct: 125 AERKTGGMNGVGSSLTNIFSVLFTGITSDGENEITVNCSNGMENKGWSTKKSKGK--GTS 182

Query: 173 VTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           V F P    F          D    RL+ L+ +   +Q +   K+     +      G  
Sbjct: 183 VIFTPDFSHFEENSLSQIYLDITLDRLQTLAVIYPDIQFTFNGKKVDGNFKKYAKQFG-- 240

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           E FV     +                           DG+ +  L + NNI  K+GG H+
Sbjct: 241 EDFVIQETDNVSMAFTPS------------------PDGFRQ--LTYVNNIHTKNGGHHV 280

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
             +   +   +   ++K          V     +E  T V+ I+ M + RF SQTKE+L 
Sbjct: 281 ECVFDDICEHLLPGIKKK----YKGIEVTKARVKECLTMVMFIRDMSNMRFDSQTKERLT 336

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           S               +  +    L+   ++  +++A++ R  A      T+       A
Sbjct: 337 SPFGE---IRNHIQIDAKKIATAILKVDGLIMPIVEAALARKLAAEKAAETKAAKKALKA 393

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            +   +          + LFL EGDSA G   + R+++ Q   PLRGK++N        +
Sbjct: 394 KVHKHIKANMYGKDADTTLFLTEGDSAMGPFIEVRNKDLQGGYPLRGKVMNTWGMTAADI 453

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + ++E+  +    G  IG+ +   +K  Y  I IMTDADVDG       L  FF Q P L
Sbjct: 454 MKNKELFDICAITGLVIGEPA---DKTNYRNIAIMTDADVDGTGSIYPSLLAFFSQWPEL 510

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
              G +   K P+     GK  ++  D  S        SL +    +    G + K + R
Sbjct: 511 FEQGRIRFCKTPVIIAQVGKEQEWFYDVPSYTK--AKDSLPKHSIRYIKGLGSLEKAEYR 568

Query: 589 NFIDD 593
             I D
Sbjct: 569 RMIQD 573


>gi|228860935|ref|YP_002853958.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB51]
 gi|227438609|gb|ACP30921.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB51]
          Length = 605

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 157/608 (25%), Positives = 246/608 (40%), Gaps = 70/608 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGD----------------TDGESGLHHMIYEVLDNAIDESLE 58
           I+IL  ++ +KKR  MYIG                      GL  +I E++DN++DE + 
Sbjct: 6   IKILSDIEHIKKRSGMYIGSSANEMHERFLFGKWESVQYVPGLVKLIDEIIDNSVDEGIR 65

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE---EGISAAEVIMTRLHAGGKFNQK 112
               +A+ I VT+  +   TV DNGRGIP  + K    E I       T   AGG F   
Sbjct: 66  TKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDD 124

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
             +V+GG++GVG S+ N  S           N   +   NG+ +         G   GT 
Sbjct: 125 KERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWETI--PGKWKGTR 182

Query: 173 VTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           VTF+P    F          D    RL+ L+ +   +Q +   K+     +         
Sbjct: 183 VTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKVQGNFKKY------- 235

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                               I   ++N SI +  R  DG+ +  L + NNI  K+GG H+
Sbjct: 236 ------------ARQYDEHAIVQEQENCSIAVG-RSPDGFRQ--LTYVNNIHTKNGGHHI 280

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
             +   +   +   +++       K  V     +E  T V+ ++ M + RF SQTKE+L 
Sbjct: 281 DCVMDDICEDLIPQIKRK-----FKIDVTKARVKECLTIVMFVRDMKNMRFDSQTKERLT 335

Query: 349 SS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           S   E+RS ++       +  +    L  + I+  +++A++ R  A      T+      
Sbjct: 336 SPFGEIRSHIQ-----LDAKKISRAILNNEAILMPIIEAALARKLAAEKAAETKAAKKAS 390

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            A +   +          + LFL EGDSA G     R +E     PLRGK+LN     + 
Sbjct: 391 KAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYA 450

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG-AHIRTLLLTFFFRQM 525
            ML ++E+  +    G  +G+ +     L Y  I IMTDAD DG   I   LL  FF   
Sbjct: 451 DMLKNKELFDICAITGLVLGEKA---ENLNYRNIAIMTDADHDGLGSIYPSLLG-FFSNW 506

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P L   G +  +K P+     GK  ++       E      +L +    +    G + K+
Sbjct: 507 PELFEQGRIRFVKTPVIIAQVGKKQEWFYTVAEYE--SAKDALPKHSIRYIKGLGSLEKS 564

Query: 586 DLRNFIDD 593
           + R  I +
Sbjct: 565 EYREMIQN 572


>gi|220680504|dbj|BAH10741.1| DNA gyrase subunit B [Nocardia brasiliensis]
          Length = 401

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 169/404 (41%), Positives = 242/404 (59%), Gaps = 33/404 (8%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I R+G  +  S+ + I    L V G A   TGT + F    +IF    +N
Sbjct: 1   NALSSRLEAEIDRDGYHWSQSYKDSIP-GKL-VQGEASKQTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEP 218
           ++T+  RL+E++FLN  + I+L D+R                                + 
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSESEITDDVVSETAEAPKHAEADAAAAPVEHKV 118

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
           +  T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N
Sbjct: 119 KTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFAN 178

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+
Sbjct: 179 TINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVSEPQ 238

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L
Sbjct: 239 FEGQTKTKLGNTEVKSFVQKACNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKAREL 298

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+
Sbjct: 299 VRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKII 358

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 NVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 401


>gi|118201768|gb|ABK79697.1| DNA gyrase subunit b [Loktanella fryxellensis]
          Length = 357

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 265/357 (74%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS +L+LRI R G  +   F  G     L V G A    GTEVTFL S   FS +DF+
Sbjct: 1   NALSDFLELRIWRNGKEHFARFEGGNTVESLRVVGDANGRKGTEVTFLASLATFSNRDFD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y  L+ RLREL+FLNS V+I L D R  E  +  +FY+GG++ FV YLDR K  ++  PI
Sbjct: 61  YHILEKRLRELAFLNSGVRIILEDLRPAEALKTELFYEGGVKEFVKYLDRSKASILPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            ++G RD+I +++AM WND Y+E VL FTNNIPQ+DGGTH++G R+ALTR I +Y + S 
Sbjct: 121 YVRGERDDIGVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRTINNYAQSSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ V + L+ W 
Sbjct: 181 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVGEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK++V K+++A++ R+AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPQIAKVVVGKIVEAALAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|60459500|gb|AAX20086.1| DNA gyrase subunit B [Leptospira interrogans serovar Kremastos]
          Length = 143

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 76/144 (52%), Positives = 105/144 (72%), Gaps = 1/144 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGILDNPLV 160
           + + ++G +Y   +  GI  + + 
Sbjct: 120 VEVHQKGKVYTQKYEKGIPVSSVQ 143


>gi|118201830|gb|ABK79728.1| DNA gyrase subunit b [Thalassobius gelatinovorus]
          Length = 357

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 270/357 (75%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R G  +   F +G     L V G A  + GTEV FL S+D FS  +++
Sbjct: 1   NALSVWLELRIWRNGKEHYAKFEHGDCTEHLRVVGDANGEKGTEVRFLASTDTFSNLEYS 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L D+R  EP +  ++Y GG++ FV YLDR K+ LM  PI
Sbjct: 61  FETLEKRLRELAFLNSGVRIILEDERPAEPLKTELYYDGGVKEFVKYLDRSKQSLMAEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G RD+I ++++M WND YHE VL FTNNIPQ+DGGTHL+G R ALTR +  Y + S 
Sbjct: 121 YVIGERDDIVVEMSMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRTLGKYAQDSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ +N+ LS WL
Sbjct: 181 IAKKEKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLMNEKLSEWL 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAK+IV K+++A++ R+AAR+ARDLTRRK  +D+  L  KL DCS++DP  +E+F
Sbjct: 241 EENPNEAKVIVSKIVEAALAREAARKARDLTRRKNPMDMNFLSSKLKDCSDKDPVNTEIF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG ++ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRKTQAILPLKGKILNVERARFDRMLGSQEIGNMVMALGTGI 357


>gi|118201758|gb|ABK79692.1| DNA gyrase subunit b [Jannaschia helgolandensis]
          Length = 356

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 219/357 (61%), Positives = 273/357 (76%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LRI R+G  +   F  G     L V G + ++TGTEV F+ S+  FS  D+ 
Sbjct: 1   NALSDWLELRIWRDGKEHVARFEGGFTTEHLSVVGPS-DETGTEVRFMASTGTFSNLDYV 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           + TL++RLREL+FLNS V+I L D+R  E     +FY+GG+  FV Y+DR K  +M  PI
Sbjct: 60  FKTLENRLRELAFLNSGVKIVLQDERPAEALRSELFYEGGVREFVRYIDRSKTAVMPDPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G RD I +++AM WND Y+E VL FTNNIPQ+DGGTHL+GLR ALTR I  Y + S 
Sbjct: 120 YMIGERDGIGVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHLAGLRGALTRTINLYAQSSG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ VN+ L+ W 
Sbjct: 180 IAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVNEKLAEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK +V K+++A+  R+AAR+AR+LTRRK  +D+ASLPGKLADC E+DP K+ELF
Sbjct: 240 EENPQIAKQVVGKIIEAAFAREAARKARELTRRKTAMDVASLPGKLADCQEKDPSKAELF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSAKQGRSR+NQA+LPLRGKILNVERARFD+ML SQEIGTLITA+GTGI
Sbjct: 300 LVEGDSAGGSAKQGRSRQNQAVLPLRGKILNVERARFDRMLGSQEIGTLITAMGTGI 356


>gi|314121567|ref|YP_004063686.1| DNA topoisomerase II large subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151324|gb|ADR32380.1| DNA topoisomerase II large subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 609

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 146/583 (25%), Positives = 234/583 (40%), Gaps = 68/583 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGE----------------SGLHHMIYEVLDNAIDESLE 58
           I++L  ++ +KKR  MYIG +  E                 G+  +I E++DN++DE++ 
Sbjct: 6   IRVLSDIEHIKKRSGMYIGSSSNEAHERFLFGEYKSVSYVPGIVKLIDEIIDNSVDEAIR 65

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIP---TDLHKEEGISAAEVIMTRLHAGGKFNQK 112
               +A+ I V +  D   +VSDNGRGIP         E I       T   AGG F   
Sbjct: 66  TSFKFANKIDVQI-KDNQISVSDNGRGIPQAMVVDQSGEQIPGPVAAWTIPKAGGNFGDD 124

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           + + +GG++GVG S+ N  S           N   ++  NG+ +       S G   GT 
Sbjct: 125 AERKTGGMNGVGSSLTNIFSVLFTGITADGANEITVNCSNGMENKGWSTKKSKGK--GTT 182

Query: 173 VTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           V F+P    F          D    RL+ L+ +   +Q +   K+  +        + G 
Sbjct: 183 VIFIPDFSHFEENSLSQIYLDITLDRLQTLAVVYPDIQFTFNGKK-VDGNFKKFSKQFGT 241

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           E  +   D        SP   +                      L + NNI  K+GG H+
Sbjct: 242 EVVIQETDTVSMAFTTSPDGFR---------------------QLTYVNNIHTKNGGHHV 280

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
             +   +   +   +++          V     +E  T ++ I+ M + RF SQTKE+L 
Sbjct: 281 ECVMDDICEHLQPAIKRK----YKGIEVTKARVKECLTMLMFIRDMSNMRFDSQTKERLT 336

Query: 349 SS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           S   E+R+ ++        A L+      + ++  +++A++ R  A      T+      
Sbjct: 337 SPAGEIRNHIQIDAKKIAQAILKN-----ESLIMPIVEAALARKLAAEKAAETKANKKAS 391

Query: 407 IASLPGKLADCSERDPK-KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
            A +   +      + K ++ LFL EGDSA G   + R RE Q   PLRGK  N    + 
Sbjct: 392 KAKVQKHIKANEWGNDKLETTLFLTEGDSATGPFIKVRDRELQGAYPLRGKFKNTWGLKA 451

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG-AHIRTLLLTFFFRQ 524
            +++ + E   +    G  IGQ +     + Y  I IMTDADVDG   I   LL  FF  
Sbjct: 452 VEVMKNAEAFDVCAITGLTIGQPA---ENMNYRNIAIMTDADVDGVGSIYPSLLA-FFSN 507

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
            P L H G +  +K P+         ++       E+      
Sbjct: 508 WPELFHEGRIRFVKTPVIIAQLKDKQEWFYSLPDYEEAKDKLP 550


>gi|297515931|gb|ADI44316.1| gyrase B [Verrucosispora sp. FXJ6.263]
          Length = 372

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 169/374 (45%), Positives = 241/374 (64%), Gaps = 8/374 (2%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ + + I ++G ++   + +      L   G   + TG+ V+F 
Sbjct: 1   SGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYDHSKPST-LEK-GEPTDRTGSAVSFW 58

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEA 231
           P  D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y GGI  
Sbjct: 59  PDPDVFETTDFDFQTIYRRLQEMAFLTRGLTIHLLDERVAEGEDGKVREVTFKYDGGIAD 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+  K P+ ++ I      + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G
Sbjct: 119 FVRHLNASKSPMHKTVIEFGAEEEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ 
Sbjct: 179 FRAALTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTP 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S V+   ND L  WL+ +P EAKII+ K   A+  R AA++AR L RRK +L+  S+P
Sbjct: 238 VKSFVQRVCNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L +
Sbjct: 298 GKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKN 357

Query: 472 QEIGTLITALGTGI 485
            E+  LITALGTGI
Sbjct: 358 NEVQALITALGTGI 371


>gi|254055415|gb|ACT64307.1| GryB [Streptomyces cinnamonensis]
          Length = 385

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 163/385 (42%), Positives = 237/385 (61%), Gaps = 22/385 (5%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+ L + IKR+G  +   +  G+   PL        ++GT VTF    D+
Sbjct: 1   GVGVSVVNALSTKLAVDIKRDGYRWTQDYKLGVPTAPLAK-HERVEESGTTVTFWADPDV 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------PEPREITM 223
           F   +++++TL  R +E++FLN  + I L D+R                    E R +T 
Sbjct: 60  FETTEYSFETLARRFQEMAFLNKGLTIKLTDERDSAKATAGADSAEATDDEAAEARTVTY 119

Query: 224 FYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
            Y+GGI  FV Y   R  + +  + I ++       +S+++AM+WN  Y E V  F N I
Sbjct: 120 HYEGGIVDFVKYLNSRKGEVVHPTVIDVEAEDKERLLSVEIAMQWNSQYTEGVYSFANTI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y  +    ++   ++ G+D REG T+++S+K+ +P+F 
Sbjct: 180 HTHEGGTHEEGFRAALTGLVNRYAREKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++E ++ V+  V++ L+ W + +P EA  I++K + A+  R AAR+ARDLTR
Sbjct: 240 GQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIIRKGIQAATARVAARKARDLTR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR    QAILP+RGKILNV
Sbjct: 300 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILNV 359

Query: 461 ERARFDKMLSSQEIGTLITALGTGI 485
           E+AR DK+L +QE+  LI+A GTG+
Sbjct: 360 EKARVDKILHNQEVQALISAFGTGV 384


>gi|157783575|gb|ABV72587.1| gyrase B [Photorhabdus sp. 3014]
          Length = 349

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 197/351 (56%), Positives = 262/351 (74%), Gaps = 4/351 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
              ALS  L+L I+R+G ++E ++  G+  +PL V G     TGT V F PS D F +  
Sbjct: 2   CCYALSEKLELIIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRNNT 60

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F +D L  RLRELSFLNS V I L+DKR+    E    Y+GGI+AFV +L+++K P+  
Sbjct: 61  EFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHP 118

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I ++ A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 119 NVFYFSTEKDGIGVEAALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 178

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 179 KEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 238

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 239 EYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 298

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T
Sbjct: 299 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 349


>gi|318066893|emb|CBY89158.1| DNA gyrase subunit B [Modicisalibacter tunisiensis]
          Length = 349

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 203/352 (57%), Positives = 256/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R G ++E  + +G+ D PL V G     +GT V F PS++ F+ 
Sbjct: 1   VSVVNALSEELKLTIWRAGQVHEQLYHHGVPDAPLTVVGET-QKSGTRVHFRPSAETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLTDERSGKE--ELFHYEGGLRAFVDHLNTNKSTLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I++++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFEAQRPDGIAVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    SKK K S  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +    
Sbjct: 178 EAEGLSKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQELGREF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L EHP EAK IV K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SDYLIEHPNEAKSIVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|318066839|emb|CBY89131.1| DNA gyrase subunit B [Halomonas elongata]
          Length = 349

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 198/352 (56%), Positives = 250/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+G ++E  + +G    PL V G     TG+ V F PSS+ F  
Sbjct: 1   VSVVNALSEELKLTIWRQGQVHEQIYRHGEAVAPLAVVG-TTEQTGSRVHFRPSSETFQN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLTDERTGKE--ELFHYEGGLRAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R++LTR +  Y+
Sbjct: 118 PVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRASLTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|2196814|gb|AAB80824.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 213/408 (52%), Positives = 285/408 (69%), Gaps = 18/408 (4%)

Query: 97  EVIMTRLHAG--GKFNQKSYKVSGGLHGVGVS-----VVNALSSWLKLRIKREGNIYEMS 149
           EVIMT   AG   K      +V G       S     +VNALS  L++ I+R G +YE  
Sbjct: 1   EVIMTVPRAGVNSKITTTDAEVDG-------SHIRTLLVNALSKKLQMTIRRAGKVYEQF 53

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G+ D P+   G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I 
Sbjct: 54  YTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIR 112

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDG 268
           L+D+R  +       Y+GGI A V+YL+R+K P+ +        R++ I++++AM+WNDG
Sbjct: 113 LVDERDNKN--EFFKYEGGISASVNYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDG 170

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y EN+ CFTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+
Sbjct: 171 YQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTA 230

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  
Sbjct: 231 VISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARA 290

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AA +AR++TRRKG LD+  LPGKLADC E+DP  SE+++VEGD AGGSAKQG +R+NQ
Sbjct: 291 RKAAGKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGSNRKNQ 350

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           AILPL+GKILNVE ARF+KML  QE+ T+ITA+G GIG+D  D +  R
Sbjct: 351 AILPLKGKILNVEEARFEKMLFFQEVATVITAIGCGIGEDDHDRSASR 398


>gi|148762357|dbj|BAF63880.1| DNA gyrase subunit B [Halobacillus aidingensis]
          Length = 325

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 224/328 (68%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+GNI+  ++  G+ +  L V G   + TGT +
Sbjct: 1   YKVFGGLHGVGASVVNALSTKLEVFVHRDGNIHYQAYHRGVPEEDLKVIGET-DQTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IFS  + + ++ L +RLREL+FLN  + I++ DKR+ E   +  +++GGI ++
Sbjct: 60  QFKPDPEIFSETEEYKFEILANRLRELAFLNKGLTITIEDKRTDEEP-VNYYFEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ L      I+  +D ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTRETLH-DAFFIEDEQDEISIEIAMQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V +S  ++  + +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDSLFSERFTKFLFENPNMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|62085672|gb|AAX63228.1| DNA gyrase subunit B [Gordonia alkanivorans]
          Length = 412

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 171/409 (41%), Positives = 238/409 (58%), Gaps = 37/409 (9%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SY VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A   TGT
Sbjct: 1   DSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWTQTYSYAKP-GALEQ-GDATRKTGT 58

Query: 172 EVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------- 216
            V F P  DIF+    FN +T+  RL+E++FLN  + I+L D+R                
Sbjct: 59  TVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDEDA 118

Query: 217 --------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
                               +P+  T  Y  G+  ++ +L+R K+ +  + I      + 
Sbjct: 119 PTTDVAEVVLSETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEG 178

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    
Sbjct: 179 HEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGK 238

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           + GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAK
Sbjct: 239 LTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAK 298

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           II+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAG
Sbjct: 299 IIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAG 358

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           GSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI
Sbjct: 359 GSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI 407


>gi|170177812|gb|ACB10232.1| GyrB [Aeromonas aquariorum]
          Length = 349

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 208/351 (59%), Positives = 266/351 (75%), Gaps = 3/351 (0%)

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RLR
Sbjct: 1   TIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLR 59

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           ELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I
Sbjct: 60  ELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 117

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K + 
Sbjct: 118 GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAA 177

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI
Sbjct: 178 SGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKI 237

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGG
Sbjct: 238 VVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGG 297

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           SAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D
Sbjct: 298 SAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 348


>gi|15551715|emb|CAC69401.1| DNA gyrase B subunit [Raoultella terrigena]
          Length = 323

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 180/326 (55%), Positives = 245/326 (75%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG +++ ++++G+  +PL VTG   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELLIRREGKVHQQTYVHGVPQHPLAVTGDT-D 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT+V F PS+  F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+
Sbjct: 60  ATGTQVRFWPSTKTFTNVIEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K    GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAAMTRTLNAYMDKEGYSKKAKVRPTGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE  +N+ L+ +L E+P +AKI+V K++DA+ VR+AARRAR++TRRKG LD
Sbjct: 238 LVSSEVKTAVEQQMNELLNEYLLENPSDAKIVVGKIIDAARVREAARRAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|60459478|gb|AAX20075.1| DNA gyrase subunit B [Leptospira interrogans serovar Zanoni]
 gi|160948494|dbj|BAF93858.1| DNA gyrase subunit B [Leptospira interrogans serovar Perameles]
          Length = 142

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/142 (52%), Positives = 104/142 (73%), Gaps = 1/142 (0%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           L+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V 
Sbjct: 2   LEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVK 60

Query: 78  DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137
           DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L++
Sbjct: 61  DNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEV 120

Query: 138 RIKREGNIYEMSFINGILDNPL 159
            + ++G +Y   +  G+  + +
Sbjct: 121 EVHQKGKVYTQKYEKGVPVSSV 142


>gi|165968974|gb|ABY76043.1| topoisomerase IV subunit ParE [endosymbiont of Acanthamoeba sp.
           UWC22]
          Length = 495

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 155/537 (28%), Positives = 242/537 (45%), Gaps = 50/537 (9%)

Query: 72  GSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLHGVGVSVVN 129
           G  +V D GRGIP             VI     ++ G K+N   ++ S GL+GVG   VN
Sbjct: 1   GLISVRDFGRGIPLGK----------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVN 50

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALSS   +R  REG   E  F  G L      +       GT V F+P  +IF    F  
Sbjct: 51  ALSSHFLVRSHREGKSMEAVFSQGKLI--REKSQKTSEPDGTYVEFIPDKEIFKKYRFEP 108

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + +Q RL   ++LN+ + +    +          + + G+   ++      +  +  P+ 
Sbjct: 109 EYIQKRLWHYAYLNTGLILEYNGQDI--------YSENGLLDLLNEEVT--EDRLYEPLY 158

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
            +G      ++ A      Y E+   F N     DGGTHLS  R  + + +  Y +K+  
Sbjct: 159 YRGK----LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVNEYSKKN-- 212

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
                    G D REG    +++++ DP F SQTK KL ++E+R  +   V D +   L 
Sbjct: 213 -------FQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDAVVNMLY 265

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP------K 423
           ++   A  I+++++           A     ++    I+    KL DC           +
Sbjct: 266 KNSSTANSIIERIVFNEK-LRKELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDKADVGE 324

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+ +FL EGDSA  S    R    QA+  LRGK LNV   + D++  ++E+  L++AL  
Sbjct: 325 KTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNI 384

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
                  DI  LRY K+I+ TDADVDG HIR LL+TFF      L+ NG L+I++ PL+ 
Sbjct: 385 -----EDDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFK 439

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           +   +   Y   EE  +  +       E+  F    G IS N+ + FI   +++  +
Sbjct: 440 VRNREKTLYCYSEEERDKAIKQLKKGIEVTRF-KGLGEISPNEFKQFIGKDIRLIPV 495



 Score = 41.1 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 2/135 (1%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +  + QAV S      +   + +    K     N ++  + +    ++    +++     
Sbjct: 344 RDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNIEDDIENLRYQKVILA-TDA 402

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
            V    +      F        + +  +      +  +      +         D     
Sbjct: 403 DVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVRNREKTLYCYSEEER-DKAIKQ 461

Query: 730 GRKGISMQRYKGLGE 744
            +KGI + R+KGLGE
Sbjct: 462 LKKGIEVTRFKGLGE 476


>gi|62085682|gb|AAX63233.1| DNA gyrase subunit B [Gordonia desulfuricans]
          Length = 410

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 176/413 (42%), Positives = 242/413 (58%), Gaps = 40/413 (9%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ +++ I R+G  +  +F +      L V G A   TGT V F P   
Sbjct: 1   HGVGISVVNALSTKVEVEIARDGYNWAETFTDSKP-GEL-VQGDATRKTGTTVRFWPDPS 58

Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP----------------------- 216
           IF+    FN +T+  RL+E++FLN  + I+L D R                         
Sbjct: 59  IFTETTAFNAETVARRLQEMAFLNKGLTITLTDNRPKAVEVPGDPNGDAETGEGGPDTAE 118

Query: 217 -------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
                        +P+  T  Y  G+  ++ +++R K  + +S I   G      +++AM
Sbjct: 119 AVKSEEEKKVAASKPKTRTYHYPDGLVDYIKHINRTKTAIHKSVIGFTGKGTGHEVEIAM 178

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WNDGY E+V  F N I   +GGTH  G R+ALTR + SY       K+   ++ GDD R
Sbjct: 179 QWNDGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYARDKKLLKEKDSNLTGDDIR 238

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG  +V+S+K+ +P+F  QTK KL ++EV+S V+    + L  W E +P EAK+IV K +
Sbjct: 239 EGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKASGEHLEHWFEANPAEAKVIVNKAV 298

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           D++  R AAR+ARDL RRK   DI  LPGKLADC   DP K E++LVEGDSAGGSAK GR
Sbjct: 299 DSAHARLAARKARDLVRRKSATDIGGLPGKLADCRSNDPSKCEVYLVEGDSAGGSAKTGR 358

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
               QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLR
Sbjct: 359 DSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKLR 410


>gi|220680550|dbj|BAH10764.1| DNA gyrase subunit B [Nocardia paucivorans]
          Length = 400

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 169/403 (41%), Positives = 244/403 (60%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +KR+G  +  S+ +      L + G    +TGT + F P  +IF    FN
Sbjct: 1   NALSTRLEAEVKRDGYHWSQSYKDATP-GKL-IQGEPTRETGTTIRFWPDPEIFETTTFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I L D+R                              P+ +
Sbjct: 59  FETVARRLQEMAFLNKGLTIVLTDERVGDTDVTDEVVSETAEAPKHAEDGEQAPAEPKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+E FV +++R K P+  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLEDFVRHINRTKTPIHNSVVAFTGRGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR DK+L + E+  +ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 VEKARIDKVLKNNEVQAIITAFGTGI-HDEFDISKLRYHKIVL 400


>gi|165968978|gb|ABY76045.1| topoisomerase IV subunit ParE [Parachlamydia acanthamoebae]
          Length = 495

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 155/537 (28%), Positives = 242/537 (45%), Gaps = 50/537 (9%)

Query: 72  GSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLHGVGVSVVN 129
           G  +V D GRGIP             VI     ++ G K+N   ++ S GL+GVG   VN
Sbjct: 1   GLISVRDFGRGIPLGK----------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVN 50

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALSS   +R  REG   E  F  G L      +       GT V F+P  +IF    F  
Sbjct: 51  ALSSHFLVRSHREGKSMEAVFSQGKLI--REKSQKTSEPDGTYVEFIPDKEIFKKFRFEP 108

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + +Q RL   ++LN+ + +    +          + + G+   ++      +  +  P+ 
Sbjct: 109 EYIQKRLWHYAYLNTGLILEYNGQDI--------YSENGLLDLLNEEVT--EDRLYEPLY 158

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
            +G      ++ A      Y E+   F N     DGGTHLS  R  + + +  Y +K+  
Sbjct: 159 YRGK----LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVNEYSKKN-- 212

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
                    G D REG    +++++ DP F SQTK KL ++E+R  +   V D +   L 
Sbjct: 213 -------FQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDAVVNMLY 265

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP------K 423
           ++   A  I+++++           A     ++    I+    KL DC           +
Sbjct: 266 KNSSTANSIIERIVFNEK-LRKELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDKADVGE 324

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+ +FL EGDSA  S    R    QA+  LRGK LNV   + D++  ++E+  L++AL  
Sbjct: 325 KTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNI 384

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
                  DI  LRY K+I+ TDADVDG HIR LL+TFF      L+ NG L+I++ PL+ 
Sbjct: 385 -----EDDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFK 439

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           +   +   Y   EE  +  +       E+  F    G IS N+ + FI   +++  +
Sbjct: 440 VRNREKTLYCYSEEERDKAIKQLKKGIEVTRF-KGLGEISPNEFKQFIGKDIRLIPV 495



 Score = 41.1 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 2/135 (1%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +  + QAV S      +   + +    K     N ++  + +    ++    +++     
Sbjct: 344 RDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNIEDDIENLRYQKVILA-TDA 402

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
            V    +      F        + +  +      +  +      +         D     
Sbjct: 403 DVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVRNREKTLYCYSEEER-DKAIKQ 461

Query: 730 GRKGISMQRYKGLGE 744
            +KGI + R+KGLGE
Sbjct: 462 LKKGIEVTRFKGLGE 476


>gi|60459468|gb|AAX20070.1| DNA gyrase subunit B [Leptospira interrogans serovar Pomona]
          Length = 141

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 76/141 (53%), Positives = 104/141 (73%), Gaps = 1/141 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGILDN 157
           + + ++G +Y   +  GI  +
Sbjct: 120 VEVHQKGKVYTQKYERGIPVS 140


>gi|238695159|ref|YP_002922352.1| gp39 topoisomerase II, large subunit, N-terminal region
           [Enterobacteria phage JS10]
 gi|220029295|gb|ACL78229.1| gp39 topoisomerase II, large subunit, N-terminal region
           [Enterobacteria phage JS10]
          Length = 605

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 150/605 (24%), Positives = 241/605 (39%), Gaps = 63/605 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGD----------------TDGESGLHHMIYEVLDNAIDESLE 58
           I++L  ++ +KKR  MYIG                  +   GL  +I E++DN++DE++ 
Sbjct: 6   IKVLSDIEHIKKRSGMYIGSSANEAHGRFLFGNFTQVNYVPGLVKLIDEIIDNSVDEAIR 65

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE---EGISAAEVIMTRLHAGGKFNQK 112
               +A+ I V +  +   +VSDNGRGIP  +  +   E I       T   AGG F   
Sbjct: 66  TNFKFANKIDVQI-KNNQVSVSDNGRGIPQAMVTDQNGEQIPGPVAAWTIPKAGGNFGDD 124

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           + + +GG++GVG S+ N  S           N   ++  NG+ +       S G   GT 
Sbjct: 125 AERKTGGMNGVGSSLTNIFSVLFTGITSDGENEITVNCSNGMENKGWSTKKSKGK--GTS 182

Query: 173 VTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           V F P  + F          D    RL+ L+ +   +Q +   K+     +      G  
Sbjct: 183 VIFTPDFNHFEENSLSQIYLDITLDRLQTLAVIYPDIQFTFNGKKVDGNFKKYAKQFG-- 240

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           E FV     +                           DG+ +  L + NNI  K+GG H+
Sbjct: 241 EDFVIQETDNVSMAFTPS------------------PDGFRQ--LTYVNNIHTKNGGHHV 280

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
             +   +   +   ++K          V     +E  T V+ I+ M + RF SQTKE+L 
Sbjct: 281 ECVFDDICEHLLPGIKKK----YKGIEVTKARVKECLTMVMFIRDMSNMRFDSQTKERLT 336

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           S               +  +    L+   ++  +++A++ R  A      T+       A
Sbjct: 337 SPFGE---IRNHIQIDAKKIATAILKVDGLIMPIVEAALARKLAAEKAAETKAAKKALKA 393

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            +   +          + LFL EGDSA G   + R+++ Q   PLRGK++N        +
Sbjct: 394 KVHKHIKANMYGKDADTTLFLTEGDSAMGPFIEVRNKDLQGGYPLRGKVMNTWGMTAADI 453

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + ++E+  +    G  IG+ +   +K  Y  I IMTDADVDG       L  FF Q P L
Sbjct: 454 MKNKELFDICAITGLVIGEPA---DKTNYRNIAIMTDADVDGTGSIYPSLLAFFSQWPEL 510

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
              G +   K P+     GK  ++  D  S        SL +    +    G + K + R
Sbjct: 511 FEQGRIRFCKTPVIIAQVGKEQEWFYDVPSYTK--AKDSLPKHSIRYIKGLGSLEKAEYR 568

Query: 589 NFIDD 593
             I D
Sbjct: 569 RMIQD 573


>gi|118201778|gb|ABK79702.1| DNA gyrase subunit b [Nereida ignava]
          Length = 356

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 208/357 (58%), Positives = 271/357 (75%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS WL+LR+ R+G+ +   F  G     L   G +  +TGTEV FL S + FS  D++
Sbjct: 1   NALSDWLELRVWRDGSEHIARFERGDTVKHLERVGPSE-ETGTEVRFLSSLETFSNLDYS 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL+ RLREL+FLNS V+I L+D+R  E  +  +FY GG++ FV YLDR K  +M +PI
Sbjct: 60  FETLEKRLRELAFLNSGVRIILVDERPAEALKSELFYDGGVKEFVKYLDRSKSSVMDTPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            ++G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G RSALTR I  Y + + 
Sbjct: 120 YVKGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRSALTRTIQKYAQDTG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K +  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VES V + L  W 
Sbjct: 180 IAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLVGEKLLEWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P EAKI+V K+++A+M R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 240 GENPNEAKIVVGKIIEAAMAREAARKARELTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 356


>gi|165968980|gb|ABY76046.1| topoisomerase IV subunit ParE [Parachlamydia acanthamoebae]
          Length = 494

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 157/536 (29%), Positives = 243/536 (45%), Gaps = 50/536 (9%)

Query: 72  GSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLHGVGVSVVN 129
           G  +V D GRGIP             VI     ++ G K+N   ++ S GL+GVG   VN
Sbjct: 1   GLISVRDFGRGIPLGK----------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVN 50

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALSS   +R  REG   E  F  G L              GT V F+P  +IF    F  
Sbjct: 51  ALSSHFLVRSHREGKSMEAVFSQGKLIREKSQ--KTSEPDGTYVEFIPDKEIFKKYRFEP 108

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + +Q RL   ++LN+ + +    +          + + G+   ++      +  +  P+ 
Sbjct: 109 EYIQKRLWHYAYLNTGLILEYNGQDI--------YSENGLLDLLNEEVT--EDRLYEPLY 158

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
            +G      ++ A      Y E+   F N     DGGTHLS  R  + + +  Y +K+  
Sbjct: 159 YRGK----LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVNEYSKKN-- 212

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
                    G D REG    +++++ DP F SQTK KL ++E+R  +   V D +   L 
Sbjct: 213 -------FQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDAVVNMLY 265

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP------K 423
           ++P  A  I+++++    +R     A     ++    I+    KL DC           +
Sbjct: 266 KNPSTANSIIERIVFNEKLRK-ELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDKADVGE 324

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           K+ +FL EGDSA  S    R    QA+  LRGK LNV   + D++  ++E+  L++AL  
Sbjct: 325 KTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNI 384

Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543
                  DI  LRY K+I+ TDADVDG HIR LL+TFF      L+ NG L+I++ PL+ 
Sbjct: 385 -----EDDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFK 439

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           +   +   Y   EE  +  +       E+  F    G IS N+ + FI   +++  
Sbjct: 440 VRNREKTLYCYSEEERDKAIKQLKKGIEVTRF-KGLGEISPNEFKQFIGKDIRLIP 494



 Score = 41.1 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 2/135 (1%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +  + QAV S      +   + +    K     N ++  + +    ++    +++     
Sbjct: 344 RDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNIEDDIENLRYQKVILA-TDA 402

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
            V    +      F        + +  +      +  +      +         D     
Sbjct: 403 DVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVRNREKTLYCYSEEER-DKAIKQ 461

Query: 730 GRKGISMQRYKGLGE 744
            +KGI + R+KGLGE
Sbjct: 462 LKKGIEVTRFKGLGE 476


>gi|106895914|gb|ABE96852.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 345

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 200/347 (57%), Positives = 259/347 (74%), Gaps = 2/347 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRL 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R          Y+GGI+AFV YL+++K P+          +D 
Sbjct: 61  RELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 119 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + LS +L E+P +AK
Sbjct: 179 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEFLLENPSDAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 239 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 298

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG 
Sbjct: 299 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGC 345


>gi|92919033|gb|ABE96863.1| DNA gyrase subunit B [Aeromonas sp. MDC285]
          Length = 349

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 207/351 (58%), Positives = 266/351 (75%), Gaps = 3/351 (0%)

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLR
Sbjct: 1   TIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLR 59

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           ELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I
Sbjct: 60  ELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 117

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K + 
Sbjct: 118 GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAA 177

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI
Sbjct: 178 SGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKI 237

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGG
Sbjct: 238 VVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGG 297

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           SAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D
Sbjct: 298 SAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 348


>gi|72536111|gb|AAZ73163.1| gyrase B [Yersinia enterocolitica]
          Length = 351

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 203/354 (57%), Positives = 266/354 (75%), Gaps = 4/354 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFN 188
           ALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F PS   F +  +F 
Sbjct: 1   ALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQ 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+     
Sbjct: 60  YEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVF 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                +D+I +++A++WNDG+ EN+ CFTNN  Q+DGGTHL G R+A+TR + SY++K  
Sbjct: 118 YFSTMKDDIGVEVALQWNDGFQENIYCFTNNFAQRDGGTHLVGFRTAMTRTLNSYMDKEG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L
Sbjct: 178 YSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+
Sbjct: 238 LENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG
Sbjct: 298 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 351


>gi|148762379|dbj|BAF63891.1| DNA gyrase subunit B [Halobacillus trueperi]
          Length = 325

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 224/328 (68%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+GNI+  ++  G+ +  L V G   + TGT +
Sbjct: 1   YKVFGGLHGVGASVVNALSTKLEVFVHRDGNIHYQAYHRGVPEEDLKVIGET-DQTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IFS  + + ++ L +RLREL+FLN  + I++ DKR+ E   +  +++GGI ++
Sbjct: 60  QFKPDPEIFSETEEYKFEILANRLRELAFLNKGLTITIEDKRTDEEP-VNYYFEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ L      I+  +D ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTRETLH-DAFFIEDEQDEISIEIAMQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V +S  ++  + +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDSLFSESFTKFLFENPNMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|118201772|gb|ABK79699.1| DNA gyrase subunit b [Loktanella salsilacus]
          Length = 357

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 207/357 (57%), Positives = 267/357 (74%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS +L+LRI R G  +   F  G     L V G A    GTEV FL S + FS +D++
Sbjct: 1   NALSDYLELRIWRNGKEHYARFEGGYTTESLRVVGDANGRKGTEVRFLASLETFSNRDYD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           + TL+ RLREL+FLNS V+I L D+R  EP    +FY+GG++ FV YLDR K  ++  PI
Sbjct: 61  FHTLEKRLRELAFLNSGVRIILEDERPAEPLRTELFYEGGVKEFVKYLDRSKSSILPEPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            ++G RD+I I++AM WND Y+E VL FTNNIPQ+DGG+H++G R+ALTR I +Y + S 
Sbjct: 121 YVRGERDDIGIEVAMWWNDSYNEMVLPFTNNIPQRDGGSHMAGFRAALTRTINNYAQSSG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K++K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ V + L+ W 
Sbjct: 181 IAKREKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVGEKLAEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK++V K+++A++ R+AAR+ARDLTRRK  +D+  L GKL DCSE+DP K+E+F
Sbjct: 241 EENPSIAKVVVGKIVEAALAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVF 300

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGI
Sbjct: 301 LVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGI 357


>gi|318066875|emb|CBY89149.1| DNA gyrase subunit B [Halomonas taeanensis]
          Length = 349

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 198/352 (56%), Positives = 254/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R G ++E  + +G+  +PL + G     +G+ V F PS + F+ 
Sbjct: 1   VSVVNALSEELKLTIWRAGQVHEQIYHHGVPASPLSIVGKTE-KSGSRVHFRPSPETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y GG++AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYDGGLKAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R++LTR + +Y+
Sbjct: 118 PVFHFSVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRASLTRSLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K S  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQEMGRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|318066879|emb|CBY89151.1| DNA gyrase subunit B [Halomonas ventosae]
          Length = 349

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 200/352 (56%), Positives = 255/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I R G ++E  + +G+ D PL V G     +GT V F PSS+ F  
Sbjct: 1   VSVVNALSEELRLTIWRAGQVHEQVYHHGVPDAPLSVVGKTE-KSGTRVHFRPSSETFHN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV++L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFVNHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFNAEREDGVGVEVAMQWNDTFSENIFCYTNNIPQRDGGTHLAGFRAALTRSLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FS+QTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSAQTKDKLVSSEVKTAVEQEMGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|299778959|ref|YP_003734153.1| gp39 topoisomerase II large subunit [Enterobacteria phage IME08]
 gi|298105688|gb|ADI55332.1| gp39 topoisomerase II large subunit [Enterobacteria phage IME08]
          Length = 605

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 148/605 (24%), Positives = 242/605 (40%), Gaps = 63/605 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGD----------------TDGESGLHHMIYEVLDNAIDESLE 58
           I++L  ++ +KKR  MYIG                  +   GL  +I E++DN++DE++ 
Sbjct: 6   IKVLSDIEHIKKRSGMYIGSSANEAHGRFLFGNFTQVNYVPGLVKLIDEIIDNSVDEAIR 65

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE---EGISAAEVIMTRLHAGGKFNQK 112
               +A+ I V +  +   +VSDNGRGIP  +  +   E I       T   AGG F   
Sbjct: 66  TNFKFANKIDVQI-KNNQVSVSDNGRGIPQAMVTDQNGEQIPGPVAAWTIPKAGGNFGDD 124

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           + + +GG++GVG S+ N  S           N   ++  NG+ +       S G   GT 
Sbjct: 125 AERKTGGMNGVGSSLTNIFSVLFTGITSDGENEITVNCSNGMENKGWSTKKSKGK--GTS 182

Query: 173 VTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           V F P  + F          D    RL+ L+ +  S+Q +   K+     +      G  
Sbjct: 183 VIFTPDFNHFEENSLSQIYLDITLDRLKTLAVIYPSIQFTFNGKKVDGNFKKYANQFG-- 240

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  V     +                           DG+    L + NNI  K+GG H+
Sbjct: 241 KDVVIQETDNVSMAFT------------------TSPDGFRH--LTYVNNIHTKNGGHHV 280

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
             +   +   +   ++K          V     +E  T ++ I+ M + RF SQTKE+L 
Sbjct: 281 ECVFDDICEHLLPGIKKK----YKGIEVSKARVKECLTMLMFIRDMSNMRFDSQTKERLT 336

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           S               +  + ++ L+ + ++  +++A++ R  A      T+       A
Sbjct: 337 SPFGE---IRNHIQIDAKKISQYILKDEGLIMPIVEAALARKLAAEKAAETKAAKKASKA 393

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            +   +          + LFL EGDSA G   + R+++ Q   PLRGK++N        +
Sbjct: 394 KVHKHIKANLYGKDADTTLFLTEGDSAMGPFIEVRNKDLQGGYPLRGKVMNTWGMTATDI 453

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + ++E+  +    G  IG+ +    K  Y  I IMTDADVDG       L  FF Q P L
Sbjct: 454 MKNKELFDICAITGLVIGEPA---EKTNYRNIAIMTDADVDGTGSIYPSLLAFFSQWPEL 510

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
              G +   K P+     GK  ++  D  S        SL +    +    G + K + R
Sbjct: 511 FEQGRVRFCKTPVIIAQVGKEQEWFYDVPSYTK--AKDSLPKHSIRYIKGLGSLEKAEYR 568

Query: 589 NFIDD 593
             I D
Sbjct: 569 RMIQD 573


>gi|195926970|dbj|BAG68372.1| gyrase B [Campylobacter sputorum biovar sputorum]
          Length = 339

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 153/344 (44%), Positives = 220/344 (63%), Gaps = 5/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS    + I + G I+   F  G+    L + G     TGT V F+P S+IF   D
Sbjct: 1   VVNALSIKFIVTIYKNGKIHRQEFSKGVPTTDLEIIGETK-KTGTTVEFIPDSEIFETTD 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN+DTL  R +EL++LNS + I+  D R  +        +GG+E+FV+ L++        
Sbjct: 60  FNFDTLSTRFKELAYLNSKITINFKDNRVGKHESYHF--EGGLESFVNDLNKANPVC--K 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +      +++ +D+A+ +N+ Y ENVL F NNI   DGGTH +G R+ LTR IT+Y+  
Sbjct: 116 ALSFSDFSEDVVVDVALMYNESYSENVLSFVNNIHTPDGGTHEAGFRAGLTRAITNYISS 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +++S+K+P+P+F  QTK KL SS V+ +V+    D L  
Sbjct: 176 NASAREKDTKISGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQKITFDTLCK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA+RARDLTR+K    + +LPGKLADC  ++ +  E
Sbjct: 236 FFEENPIEAKAIMNKALLAARGREAAKRARDLTRKKENFSVGTLPGKLADCQSKEAEICE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           L+LVEGDSAGGSAKQGR+R  QAILPLRGKILNVE+A  +K+L 
Sbjct: 296 LYLVEGDSAGGSAKQGRNRVFQAILPLRGKILNVEKAGLEKILK 339


>gi|60459466|gb|AAX20069.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Tarassovi]
 gi|60459472|gb|AAX20072.1| DNA gyrase subunit B [Leptospira weilii serovar Celledoni]
 gi|60459474|gb|AAX20073.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Ballum]
 gi|60459476|gb|AAX20074.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Javanica]
          Length = 141

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 77/142 (54%), Positives = 105/142 (73%), Gaps = 1/142 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  +    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIRISILPNNIIEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGILDNP 158
           + + ++G IY   +  GI  +P
Sbjct: 120 VEVHQKGKIYTQKYEKGIPVSP 141


>gi|218937745|gb|ACL13032.1| DNA gyrase subunit B [Lactobacillus psittaci]
          Length = 361

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 160/361 (44%), Positives = 239/361 (66%), Gaps = 2/361 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQD 186
           VNALS+ +++ + R+G  Y + F +G + + L   G+   +  GT V F P  DIF+   
Sbjct: 1   VNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIFTETI 60

Query: 187 FNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
              D  L+ R++EL+FLN  ++++  DKR          Y+GGI+ +V++LD+ ++ L  
Sbjct: 61  VFDDKILKKRIQELAFLNKGLKLTFTDKRKDSAETDVYHYEGGIKEYVAFLDKKEEKLFD 120

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +P+ ++G  D I++++A+++  GY   ++ F NNI   +GG H +G ++ALTR I  Y  
Sbjct: 121 TPVYVEGDYDGINVEVALQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVINDYAR 180

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K+   K    ++ G+D REG T+V+SIK P+P+F  QTK KL +S+ R+ V+   ++  S
Sbjct: 181 KAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFSEAFS 240

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  DP+ S
Sbjct: 241 KFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANLPGKLADNTSNDPEIS 300

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           ELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI TL TALGTG 
Sbjct: 301 ELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTALGTGF 360

Query: 486 G 486
           G
Sbjct: 361 G 361


>gi|318066823|emb|CBY89123.1| DNA gyrase subunit B [Halomonas almeriensis]
          Length = 349

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 200/352 (56%), Positives = 252/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+G ++E  + +G+   PL V GS    +G+ V F PS++ F  
Sbjct: 1   VSVVNALSEELKLTIWRQGQVHEQVYQHGVPVQPLSVVGSTE-QSGSRVHFRPSTETFHN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLTDERSGKE--ELFHYEGGLRAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R++LTR +  YV
Sbjct: 118 PVFHFNVERDDGVGVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRASLTRTLNHYV 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKSKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|308814356|ref|YP_003934630.1| topoisomerase II large subunit N-terminal region [Shigella phage
           SP18]
 gi|308205948|gb|ADO19347.1| topoisomerase II large subunit N-terminal region [Shigella phage
           SP18]
          Length = 610

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 143/581 (24%), Positives = 232/581 (39%), Gaps = 64/581 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGE----------------SGLHHMIYEVLDNAIDESLE 58
           I++L  ++ +KKR  MYIG +  E                 G+  +I E++DN++DE++ 
Sbjct: 7   IKVLSDVEHIKKRSGMYIGSSSNEAHERFLFGEYKSVSYVPGIVKLIDEIIDNSVDEAIR 66

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE---EGISAAEVIMTRLHAGGKFNQK 112
               +A+ I V +  D   +VSDNGRGIP  +  +   E I       T   AGG F   
Sbjct: 67  TSFKFANKIDVQI-KDNQISVSDNGRGIPQAMVTDQNGEQIPGPVAAWTIPKAGGNFGDD 125

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           + + +GG++GVG S+ N  S           N   ++  NG+ +       S G   GT 
Sbjct: 126 AERKTGGMNGVGSSLTNIFSVLFTGITADGANEITVNCSNGMENKGWSTKKSKGK--GTT 183

Query: 173 VTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           V F+P    F          D    RL+ L+ +   +Q +   K+  +        + G 
Sbjct: 184 VIFVPDFSHFEENSLSQIYLDITLDRLQTLAVVYPDIQFTFNGKK-VDGNFKKFSKQFGT 242

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           E  +   D        SP   +                      L + NNI  K+GG H+
Sbjct: 243 EVVIQETDTVSMAFTTSPDGFR---------------------QLTYVNNIHTKNGGHHV 281

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
             +   +   +   +++          V     +E  T ++ I+ M + RF SQTKE+L 
Sbjct: 282 ECVMDDICEHLQPAIKRK----YKGIEVTKARVKECLTMLMFIRDMSNMRFDSQTKERLT 337

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           S               +  + +  L+ + ++  +++A++ R  A      T+       A
Sbjct: 338 SPAGE---IRNHIKIDAKKIAQAILKNEPLIMPIVEAALARKLAAEKAAETKANKKASKA 394

Query: 409 SLPGKLADCSERDPK-KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            +   +      + K ++ LFL EGDSA G   + R RE Q   PLRGK  N    +  +
Sbjct: 395 KVQKHIKANEWGNDKLETTLFLTEGDSATGPFIKVRDRELQGAYPLRGKFKNTWGLKAVE 454

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG-AHIRTLLLTFFFRQMP 526
           ++ + E   +    G  IGQ +     + Y  I IMTDADVDG   I   LL  FF   P
Sbjct: 455 VMKNAEAFDVCAITGLTIGQPA---ENMNYRNIAIMTDADVDGVGSIYPSLLA-FFSNWP 510

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
            L H G +  +K P+         ++       E+      
Sbjct: 511 ELFHEGRIRFVKTPVIIAQLKDKQEWFYSLPDYEEAKDKLP 551


>gi|106895899|gb|ABE96842.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 346

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 205/349 (58%), Positives = 264/349 (75%), Gaps = 3/349 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GI
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 346


>gi|318066811|emb|CBY89117.1| DNA gyrase subunit B [Chromohalobacter marismortui]
          Length = 349

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 203/352 (57%), Positives = 255/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL + R G +YE  + +G+ D+PL V G     +GT+V F PS+D F+ 
Sbjct: 1   VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLSVVGKTE-KSGTQVNFKPSTDTFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS    E    Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLLDERSG--AEELFHYEGGLRAFVDHLNTNKATLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFETQREDGIGVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +   L
Sbjct: 178 ETEGLLKKAKVNTAGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTAVEQEMGRQL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E P +AK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 GDYLVERPNDAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|121309742|dbj|BAF44193.1| DNA gyrase subunit B [Leptospira kmetyi serovar Malaysia]
          Length = 140

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 76/141 (53%), Positives = 103/141 (73%), Gaps = 1/141 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIIEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  RDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGILDN 157
           + + ++G  Y   +  GI  +
Sbjct: 120 VEVHQKGKCYTQKYEKGIPVS 140


>gi|37731960|gb|AAO23340.1| type II topoisomerase [Strigomonas culicis]
          Length = 1230

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 149/765 (19%), Positives = 280/765 (36%), Gaps = 68/765 (8%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEV 48
           D    + L  +D V  RP MY+G  + +                       GL  ++ E+
Sbjct: 3   DPSKYKKLSPIDHVLLRPEMYVGSIETQPVSMFVFDPVKACMAWESMQVNHGLLKIVDEI 62

Query: 49  ----LDNAIDESLEGY--ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
               +DN I+ + +G      I +T++  G  T+ ++G GIP   +KE  I   E++   
Sbjct: 63  PAQLVDN-INNA-KGRRKMTFIKITMSDLGEITIENDGAGIPIVKNKEHKIYIPEMVFGH 120

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--LDNPLV 160
           L     ++      + G HG G  + N LS+   +  + EG  + MS+ + +     P V
Sbjct: 121 LLTSSNYDNDESSTTAGRHGYGAKLTNILSTQFSVLCRTEGKEFRMSWTDHMRKATAPRV 180

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQISLIDKRS 215
            +        T + F+P    F  ++          L  R+ +L+ +  S+Q+S+     
Sbjct: 181 SSCDKAESNLTRIKFMPDYAHFGFKNNQISLDMKRVLHKRIMDLAAMFPSIQVSIN---G 237

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
                 +     G+ +            +     +  SR+  SI    + N G  + +  
Sbjct: 238 VPFAFKSFDDYAGLYS-----IPSSDGQLPPKPFVHNSRNG-SIAFVPQLNAG-AKRIFG 290

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
             N +   +GGTH +     LT  + +    S   KKD + V  +     FT ++ +   
Sbjct: 291 VVNGVVTHNGGTHCNAASDILTGTLDAL---SRTLKKDGKVVDANRVMRHFTILVFLIQS 347

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F SQ+K +LVS+     V     +    +L   P     +       +   +    A
Sbjct: 348 QPKFDSQSKARLVSTVTMPRVPKGELE---QYLSSMPFLEAHVNSMSDQIAAELNKEMGA 404

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILP 452
             L   K ++   +                 L + EGDSA   A        +    + P
Sbjct: 405 GKLLSSKSLISSITKLVDATSNKSDGKNIRTLIVTEGDSAKALALNSLSSDQKRFCGVFP 464

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGK+LNV      ++ + +E+  L  ALG  +G+    +N+LRY +++ MTD D DG+H
Sbjct: 465 LRGKLLNVRNNNLKRLKNCKELQDLFLALGLELGKTYRSLNELRYQRLLTMTDQDADGSH 524

Query: 513 IRTLLLTFFFRQMPSLI--HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           I+ L++  F    P L+  H G++ +   P+  I      Q V    S +D+   Q    
Sbjct: 525 IKGLVINAFESLWPELLQRHQGYISLFSTPIVKIRPRGKNQDVLSFYSFKDFHKWQRAHP 584

Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630
            +         +  +      +    +++ I            +  ++  VF+ +  +  
Sbjct: 585 NVNYTAKYYKGLGTSTTAEGKEYFSNMEQNIMKL----QVDPKDHKLLDSVFDSQEVEWR 640

Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690
              +    A   +   ++S+K           +V     G           +     K  
Sbjct: 641 KDWMTKANAFNGDVDIDRSKKVLSIPDFVHKEMVHFALAGNARAIAHSVDGLKPSQRKIL 700

Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPC----SLLDTIFSIGR 731
                R +     +  L  +G   +++       SL +TI  + +
Sbjct: 701 WALFKRGKAESAKVAQL--SGYISEVSSFHHGEMSLQETIVKMAQ 743


>gi|318066867|emb|CBY89145.1| DNA gyrase subunit B [Halomonas pacifica]
          Length = 349

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 199/352 (56%), Positives = 255/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL + R G ++E  + +G+ + PL V G     +GT V F PS + F+ 
Sbjct: 1   VSVVNALSEELKLTVWRAGQVHEQIYRHGVPEAPLSVVGKTE-QSGTRVHFRPSPETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I LID+RS +       Y+GG++AFV++L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLIDERSGKE--ELFHYEGGLKAFVNHLNTNKSTLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 SVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAALTRTLNGYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQEMGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L EHP EAK +V K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKL DC E+DP  
Sbjct: 238 SEYLIEHPNEAKAVVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLVDCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|188037414|gb|ACD46323.1| DNA gyrase subunit B [Providencia burhodogranariea]
          Length = 270

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 154/273 (56%), Positives = 196/273 (71%), Gaps = 4/273 (1%)

Query: 87  LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146
           + +EEGIS+AEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++
Sbjct: 1   IREEEGISSAEVIMTVLHAGGKFDDYSYKVSGGLHGVGVSVVNALSEKLELVIRRDGEVH 60

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSS 205
           E  + +G+    L V G   + TGT V F PS D F    +F YD L  RLRELSFLNS 
Sbjct: 61  EQVYSHGVPQGALTVVGET-DQTGTFVRFWPSYDTFKTVTEFEYDILAKRLRELSFLNSG 119

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V I LIDKR  +       Y+GGI+AFV YL R+K P+  S       +D I ++++M+W
Sbjct: 120 VSIRLIDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGIGVEVSMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K    KK K S  GDD REG
Sbjct: 178 NDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMDKEGYHKKSKVSATGDDAREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+
Sbjct: 238 LIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|83758690|dbj|BAE54516.1| DNA gyrase subunit B [Rhodococcus sp. TKN45]
          Length = 390

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 160/392 (40%), Positives = 230/392 (58%), Gaps = 34/392 (8%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS+ L + IKR+G  +  ++ +      L V G A  +TGT VTF    
Sbjct: 1   LHGVGISVVNALSTRLDVDIKRDGFRWNQTYTDSKP-GEL-VKGEATKETGTTVTFWADP 58

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------ 215
           +IF    ++++T+  RL+E++FLN  + I+L D+R                         
Sbjct: 59  NIFETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTAEDES 118

Query: 216 --------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
                    + +     Y GG+E +V +++R K+P+  S +          +++AM+WN 
Sbjct: 119 AEAGAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHELEIAMQWNS 178

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY E+V  F N I   +GGTH  G RSALT  +  Y       K+    + GDD REG  
Sbjct: 179 GYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIREGLA 238

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +++S+K+ +P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK IV K + ++ 
Sbjct: 239 AIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAVSSAQ 298

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AAR+AR+L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    
Sbjct: 299 ARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMY 358

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           QAILPLRGKI+NVE+AR D++L + E+ ++IT
Sbjct: 359 QAILPLRGKIINVEKARIDRVLKNTEVQSIIT 390


>gi|135994|sp|P27570|TOP2_CRIFA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|11001|emb|CAA42182.1| kinetoplast-associated type II DNA topoisomerase (toptIImt)
           [Crithidia fasciculata]
          Length = 1239

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 134/663 (20%), Positives = 242/663 (36%), Gaps = 54/663 (8%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEV 48
           DA   Q L  +D V  RP MY+G  + +S                      GL  ++ E+
Sbjct: 3   DASKYQKLTPIDHVLLRPEMYVGSIETQSIPMFVFDPAKGKMVWESMQVNQGLLKIVDEI 62

Query: 49  LDNAIDE---SLEG-YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           L NA D    S+ G     I++ ++  G   V ++G G+P    KE  +   E++   L 
Sbjct: 63  LLNAADNINNSVRGARMTYISIKISDSGEIMVENDGAGLPIVKSKEHKMYIPEMVFGHLL 122

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--ILDNPLVVT 162
               +N  +   + G HG G  + N LS+   +  +  G  + MS+ +   +   P V  
Sbjct: 123 TSSNYNNDASSTTAGRHGYGAKLTNILSTKFSVVCRTAGREFHMSWTDHMRMATTPRVSN 182

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQISLIDKRSPE 217
                   T VTF+P    F              L  R+ +L+ + S +++ L +     
Sbjct: 183 VDPKEKNVTRVTFMPDYAHFGFPTAAISLDMKRVLHKRIMDLAAMFSKIEVRLNNVPFGF 242

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                        A +  L      +   P    G   +I+    +  +    + ++   
Sbjct: 243 QTFNDY-------ARLYSLPGADGAMPPEPFVHTGPNGSIAFVPQLTQS---PKRIVGVV 292

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N +   +GGTH +     L   + S        K  K        R  FT ++ +    P
Sbjct: 293 NGVVTYNGGTHCTSAMEILETGLDSLSRSLK--KDGKVIDTNRVAR-HFTVLVFLIQSQP 349

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F SQ+K +LVS+     V     D   A +                A+ +       + 
Sbjct: 350 KFDSQSKARLVSTVTMPRVPRTALDQYLAAMPFLEAHMNS--MDDQLAAELNKEIGTGKR 407

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLR 454
           L+ R  +  I  L    +           L + EGDSA   A        ++   + PLR
Sbjct: 408 LSSRSLISSITKLVDATS-SRSDGKNIRTLIVTEGDSAKALALNSLSSEQKKFCGVFPLR 466

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK+LNV      ++ + +E+  L  ALG  +G+      +LRY ++++MTD D DG+HI+
Sbjct: 467 GKLLNVRNKNLKRLKTCKELQDLFLALGLELGKTYKSPAELRYQRLLVMTDQDADGSHIK 526

Query: 515 TLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
            L++  F    PSL+ +  G++ +   P+  I      + V    S  D+   Q  +   
Sbjct: 527 GLVINAFESLWPSLLQHNPGYISLFSTPIVKIKVNGKAKEVVAFHSFRDFHRWQRANPNA 586

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                    +  +      +    +++ +           +  +V          + ++ 
Sbjct: 587 RYSAKYYKGLGTSTTAEGKEYFADMERNVMRLVVEPKDHRLLDSVFDSAEVEWRKEWMSK 646

Query: 633 SLA 635
           + A
Sbjct: 647 ANA 649


>gi|47216863|emb|CAG11670.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1568

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/580 (18%), Positives = 203/580 (35%), Gaps = 108/580 (18%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------------------------- 39
            Q    L+ +  RP  YIG  +  +                                   
Sbjct: 18  YQKKTQLEHILLRPDTYIGSVEPVTQVGPGSTAPRPKTTPFLEYSCPIWFFFQQMWVFDE 77

Query: 40  -------------GLHHMIYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGRGIP 84
                        GL+ +  E+L NA D          I +T++ +  + ++ +NG+GIP
Sbjct: 78  EVGMNQREVTYVPGLYKIFDEILVNAADNKQRDKNMTAIKITIDPESNTISIWNNGKGIP 137

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI----K 140
              HK+E +    +I   L     ++    KV+GG +G G  + N  S+   +       
Sbjct: 138 VVEHKDEKMYVPALIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEY 197

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLR 197
           R  + ++ ++ N +             D  T VTF P    F ++  + DT+     R  
Sbjct: 198 R--HSFKQTWQNNMTKTSEPKVKLFDGDDFTCVTFQPDLSKFKMEKLDKDTMALLTRRAY 255

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           +++     V+++L  K+             G  ++V    + K       +++     N 
Sbjct: 256 DVAGSCRGVKVTLNGKK---------LPVNGFRSYVDLYVKDKLDETGVALKVVNETVNE 306

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
             ++ +  ++   + +  F N+I    GG H+  +   +  ++   V+K   +     +V
Sbjct: 307 RWEVCLTLSEKGFQQI-SFVNSIATTKGGRHIDYVVDQIVAKLIEVVKKKNKAG---VTV 362

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLV------------SSEVRSVVESFV----- 360
                +      ++  + +P F SQTKE +             S +    V +       
Sbjct: 363 KPFQVKNHIWVFVNALIENPSFDSQTKENMTLQTKSFGSKCPLSDKFIRAVRTPPGRPSS 422

Query: 361 ------NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
                 +  L      +    + I+  V   +         +  + +   +         
Sbjct: 423 CTRAVKSRCLCHLQATNCGIVESILNWVKFKAQ---TQLNKKCSSVKHSKIKGIPKLDDA 479

Query: 415 ADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
            D   +   +  L L EGDSA      G    GR R    + PLRGKILNV  A   +++
Sbjct: 480 NDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREATHKQIM 537

Query: 470 SSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDA 506
            + EI  +I  +G    +   D      LRY KI+IMTD 
Sbjct: 538 ENAEINNIIKIVGLQYKKSYDDAESLRSLRYGKIMIMTDQ 577


>gi|308483878|ref|XP_003104140.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
 gi|308258448|gb|EFP02401.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
          Length = 1165

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 126/666 (18%), Positives = 240/666 (36%), Gaps = 61/666 (9%)

Query: 22  DAVKKRPSMYIGDT-----------------------DGESGLHHMIYEVLDNAIDE-SL 57
           + V  RP  YIG                             GL  +  E+L NA D  S 
Sbjct: 50  EHVLLRPDTYIGGVAMRESEIVWLRSLESKQMYTKEVSYPPGLLKIFDEILVNAADNKSR 109

Query: 58  EGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
           +   + + V ++   S  +V +NG G+P ++H  E I    ++   L     ++    K 
Sbjct: 110 DSNMNRLEVWVDRKTSRISVWNNGGGLPVEIHPSENIYVPTLVFGNLFTSSNYDDSEIKT 169

Query: 117 SGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGS---AGNDTGT 171
            GG +G G  + N  S+   +     R    +   + N + +                 T
Sbjct: 170 VGGRNGYGAKLCNIFSTEFIVETVDSRTKKKFRQRWFNNMKECDEAEIVDLQNEKTTDYT 229

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           +V F+P    F +   + D +    + +  + +++   +    + +  E+      G E 
Sbjct: 230 KVEFVPDLKRFQMDCLSDDIIDLIGKRIFEVTATLPNDVQVYLNGQKCEV-----NGFEE 284

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH---ENVLCFTNNIPQKDGGTH 288
           +V   + +              R ++ +     +          V+ F NNI  + GGTH
Sbjct: 285 YVRMFNYYDPSSFLFLHPTS--RWHVGVAKRNTYIGDDQLILPKVVSFVNNINTEKGGTH 342

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           +  +   +   I   V+      +  +SV     +   +  ++  + +P F SQTKE + 
Sbjct: 343 VDYVMDKIVNVIKPLVDSR--LAEFGKSVKPAMIKNNLSIFINCLIENPSFESQTKETVT 400

Query: 349 S-SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           +  ++        +  ++ W EE     +I+ + +        A R      R    L+ 
Sbjct: 401 TKPKLFGSSFDCDHKKVTKWAEESGFVEEIVEEALNLKKKKVPAKRVTSSSVRDIVKLED 460

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERAR 464
           A   G          +K  L L EGDSA   A  G     RE   + PL+GK++NV    
Sbjct: 461 AEWAG-----ISGKSEKCTLILTEGDSAKALALSGLEVLGRETYGVFPLKGKLVNVSNID 515

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
             +   ++EI  ++  LG    +++     +RY +++I+ D D DG+HI+ L++ F  + 
Sbjct: 516 DVRASKNEEISNVMRILGLRFEEEAPTQESMRYGRLLILADQDEDGSHIKGLVINFIHKF 575

Query: 525 MPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            PSLI    F+   + PL    +G  ++        + +        +I+ +       S
Sbjct: 576 WPSLIRSRDFIQSFRTPLLKAKKGDKVKSFFSINEYQKWAEETEGKWKIKYYKGLGTSTS 635

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                  I+       L             +   I   F+ E   E    +  + + RL 
Sbjct: 636 -------IEAKEYFSDLDHHVINFKYTGLNDDKAIRMAFDREKSDERKEWI--RGSKRLE 686

Query: 644 FIAEKS 649
            + +  
Sbjct: 687 SLVDDG 692


>gi|207107898|dbj|BAG71961.1| DNA gyrase subunit B [Gordonia effusa]
          Length = 409

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 174/412 (42%), Positives = 247/412 (59%), Gaps = 36/412 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I   G  ++ ++ N + D PL   G+A   TGT V+F P S+IF 
Sbjct: 1   GISVVNALSTRVELSIDYGGFHWDQTYHNAVPD-PLEK-GAATRKTGTTVSFWPDSEIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------------------- 214
              FN +T+  RL+E++FLN  + I+L D+R                             
Sbjct: 59  TTTFNAETVARRLQEMAFLNKGLTITLTDERLTDEAAEAEAEMGGTDGEQTAEAIANKEE 118

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                 + +  T  Y  G+  ++ +L+R K  +  S +   G      +++AM+WN+GY 
Sbjct: 119 KADRVAKIKTRTYHYPDGLVDYIKHLNRTKNAIHSSVVGFTGKGTGHEVEIAMQWNNGYS 178

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+
Sbjct: 179 ESVHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLVKEKDGKLTGDDIREGLAAVI 238

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ DP+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK+I++K +D++  R 
Sbjct: 239 SVKVGDPQFEGQTKTKLGNTEVKSFVQKMCNEHLAHWFESNPAEAKVIIRKAVDSAQARM 298

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAI
Sbjct: 299 AARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAI 358

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 LPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIEKLRYHKIVL 409


>gi|215271430|emb|CAR48204.1| gyrase B subunit [Vibrio natriegens]
          Length = 350

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 200/352 (56%), Positives = 271/352 (76%), Gaps = 3/352 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PSS+ F+  +F+YD
Sbjct: 1   LSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSSETFTNTEFHYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV +L+ +K P+++     
Sbjct: 60  ILAKRLRELSFLNSGVSIKLSDER-EEDKHDHFMYEGGIQAFVQHLNTNKTPIIEKIFHF 118

Query: 251 QGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
              R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   
Sbjct: 119 NFEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGF 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           S+K K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L 
Sbjct: 179 SRKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLV 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++
Sbjct: 239 ENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYI 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 299 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|318066841|emb|CBY89132.1| DNA gyrase subunit B [Halomonas eurihalina]
          Length = 349

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 196/352 (55%), Positives = 249/352 (70%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I R+G ++E  + +G    PL V G     TG+ V F PS + F  
Sbjct: 1   VSVVNALSEELRLTIWRQGQVHEQLYRHGEAVAPLSVVG-TTEQTGSRVHFRPSPETFHN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLTDERTGKE--ELFHYEGGLRAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R++LTR +  Y+
Sbjct: 118 PVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRASLTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|223717681|emb|CAX46420.1| gyrase B subunit [Vibrio natriegens]
          Length = 350

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 201/352 (57%), Positives = 271/352 (76%), Gaps = 3/352 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PSS+ F+  +F+YD
Sbjct: 1   LSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSSETFTNTEFHYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV +L+ +K P+++     
Sbjct: 60  ILAKRLRELSFLNSGVSIKLSDER-EEDKHDHFMYEGGIQAFVQHLNTNKTPIIEKIFHF 118

Query: 251 QGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
              R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   
Sbjct: 119 NFEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGF 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L 
Sbjct: 179 SKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLV 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++
Sbjct: 239 ENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYI 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 299 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|170177820|gb|ACB10236.1| GyrB [Aeromonas aquariorum]
          Length = 349

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 208/351 (59%), Positives = 265/351 (75%), Gaps = 3/351 (0%)

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            I R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RLR
Sbjct: 1   TIXRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLR 59

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           ELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I
Sbjct: 60  ELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 117

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K + 
Sbjct: 118 GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAA 177

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI
Sbjct: 178 SGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKI 237

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGG
Sbjct: 238 VVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGG 297

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           SAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D
Sbjct: 298 SAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 348


>gi|92919035|gb|ABE96864.1| DNA gyrase subunit B [Aeromonas sp. MDC364]
          Length = 347

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 206/349 (59%), Positives = 264/349 (75%), Gaps = 3/349 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GI
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 346


>gi|308197531|gb|ADO17803.1| GyrB [Vibrio brasiliensis LMG 20546]
          Length = 285

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 152/287 (52%), Positives = 210/287 (73%), Gaps = 3/287 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
              + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  E +    
Sbjct: 61  DT-DKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            ++GGI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ
Sbjct: 119 MFEGGIQAFVDHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           TK+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R
Sbjct: 239 TKDKLVSSEVKSAVESAMGEKLSEFLVENPTEAKMVCSKIIDAARAR 285


>gi|318066885|emb|CBY89154.1| DNA gyrase subunit B [Kushneria aurantia]
          Length = 349

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 198/352 (56%), Positives = 264/352 (75%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R   ++E ++ +G+  +PL V G     +GT+++F PSS+ F+ 
Sbjct: 1   VSVVNALSEELKLTIWRNHQVHEQTYHHGVPQSPLAVVGDTE-RSGTQISFKPSSETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+Y+ L  RLRELSFLNS V I LID+R  + RE    Y+GG+ AFV +L+ ++  + 
Sbjct: 60  IEFHYEILAKRLRELSFLNSGVAIRLIDER--DGREELFHYEGGLRAFVDHLNTNRTTVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I++++AM+WND + EN+ C+TNNIPQ+DGGTH++G R+ALTR + SY+
Sbjct: 118 PVFHFNVERDDGIAVEVAMQWNDSFTENIFCYTNNIPQRDGGTHMAGFRAALTRSLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  ++  L
Sbjct: 178 ESEELQKKAKVTTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMSRQL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E+P EAK IV K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP +
Sbjct: 238 SDYLLENPNEAKAIVNKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPTR 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R +QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRSQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|318066825|emb|CBY89124.1| DNA gyrase subunit B [Halomonas anticariensis]
          Length = 349

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 200/352 (56%), Positives = 253/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R G +YE  + +G+ + PL V G     +GT V F PS   F  
Sbjct: 1   VSVVNALSEELKLTIWRAGQVYEQIYHHGVPEAPLGVVGKTE-KSGTRVHFRPSPLTFGN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLKAFVDHLNTNKTTLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R++LTR + SY+
Sbjct: 118 PVFHFDAQREDGVGVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRASLTRTLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKTKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRMF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|318066819|emb|CBY89121.1| DNA gyrase subunit B [Cobetia marina]
 gi|318066849|emb|CBY89136.1| DNA gyrase subunit B [Halomonas halodurans]
          Length = 349

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 201/352 (57%), Positives = 253/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+G ++E  + +G+ + PL V G+    +GT V F PS   F  
Sbjct: 1   VSVVNALSEELKLTIWRQGKVHEQIYRHGVPEAPLAVVGNTE-KSGTLVRFKPSPLTFGN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F+Y+ L  RLRELSFLNS V I LID+RS +       Y+GG++AFV +L+ +K  L 
Sbjct: 60  IAFHYEILAKRLRELSFLNSGVAIRLIDERSGKE--ELFHYEGGLKAFVDHLNTNKAALN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR + SY+
Sbjct: 118 PVFHFEMEREDGIGVEVAMQWNDAFSENIFCYTNNIPQRDGGTHLAGFRAALTRTLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|15551713|emb|CAC69405.1| DNA gyrase B subunit [Morganella morganii]
          Length = 323

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 181/326 (55%), Positives = 236/326 (72%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E  + +G   + L V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-D 59

Query: 168 DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS D F    +F YD L  RLRELSFLNS V I LIDKR  +       Y+
Sbjct: 60  KTGTRVRFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL R K  +  +       +D+I ++++M+WND + ENV CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLSRAKTSIHNNVFYFSTEKDDIGVEISMQWNDSFQENVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            HL+G R+A+TR + SY+EK   +K+ K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 AHLAGFRAAMTRTLNSYIEKEGLNKRSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ LS +L+E+P + KIIV K++DA+  R+AARRAR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPAFSELYLVEG 323


>gi|215271406|emb|CAR48192.1| gyrase B subunit [Vibrio campbellii]
          Length = 350

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 200/352 (56%), Positives = 270/352 (76%), Gaps = 3/352 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ FS  +F+YD
Sbjct: 1   LSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNTEFHYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV +L+ +K P+++     
Sbjct: 60  ILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNKTPIIEKIFHF 118

Query: 251 QGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
              R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   
Sbjct: 119 NSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGF 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L 
Sbjct: 179 SKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLI 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP   EL++
Sbjct: 239 ENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALFELYI 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 299 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|323364331|gb|ADX42735.1| DNA gyrase subunit B [Bacillus sp. KJW98]
          Length = 356

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 174/357 (48%), Positives = 251/357 (70%), Gaps = 2/357 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FN 188
           ALS   ++ + R+G +Y ++F  G++   L V G A  +TGT+V F    +IF+    + 
Sbjct: 1   ALSERTEVTVARDGELYFIAFERGLVAEELRVIGKAE-ETGTQVRFKADPEIFTETTVYE 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L HRL+EL++LN  ++I+L D+R  E R     Y+GGI+++V +++  K+P+ + PI
Sbjct: 60  YDILAHRLQELAYLNRGIRITLTDERGEEKRRDAYHYEGGIKSYVQHINEDKEPIHEEPI 119

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+G RD IS+++AM++N GY  N+  F NNI   +GGTH SG ++ALTR I  Y  K+ 
Sbjct: 120 FIEGERDGISVEVAMQYNAGYASNIFSFANNINTYEGGTHESGFKTALTRVINDYARKNG 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K ++ ++ G+D REG T+++S+K PDP+F  QTK KL +SEV  +V S  +DG   +L
Sbjct: 180 LLKDNEANLSGEDAREGLTAIISVKHPDPQFEGQTKTKLGNSEVSQIVNSLFSDGFERFL 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P  A++IV+K L A+  R AA++AR+LTRRK VL+I++LPGKL+DCS RDP  SEL+
Sbjct: 240 LENPTGARMIVEKGLMAARARVAAKKARELTRRKSVLEISNLPGKLSDCSSRDPAISELY 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           +VEGDSAGGSAK GR R  QAILPL+GKILNVE+A  +++LS+ EI  +ITALGTGI
Sbjct: 300 IVEGDSAGGSAKNGRDRHFQAILPLKGKILNVEKANINRILSNAEIRAMITALGTGI 356


>gi|318066831|emb|CBY89127.1| DNA gyrase subunit B [Halomonas campaniensis]
          Length = 349

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 203/352 (57%), Positives = 254/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R G ++E  + +G+   PL V G    ++GT V F PS + F+ 
Sbjct: 1   VSVVNALSEELKLTIWRAGEVFEQVYYHGVPAAPLAVVGKTE-NSGTRVHFRPSPETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I LID+RS +       Y+GG+EAFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLIDERSGKE--ELFHYEGGLEAFVHHLNTNKAVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D +S+++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFNAEREDGVSVEVAMQWNDSFSENIFCYTNNIPQRDGGTHLAGFRAALTRTLNGYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG  +++S+K+PDP+FSSQTKEKLVSSEV++ VE  +    
Sbjct: 178 ESEGLLKKSKVNTSGDDAREGLVAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQEMGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SEYLVEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|302122536|gb|ADK92937.1| DNA gyrase subunit B [Geobacillus sp. 49]
          Length = 332

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 157/334 (47%), Positives = 222/334 (66%), Gaps = 3/334 (0%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALS WL++ + R+G I+   +  G     L V G   + TGT   F P  +IF+
Sbjct: 1   GASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIFT 59

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F+Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V +L+R ++ 
Sbjct: 60  ETTEFDYETLATRLRELAFLNRGLKITLTDERIDSRKNE-YVYEGGIRSYVRHLNRTREV 118

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L + PI I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG + ALTR I  
Sbjct: 119 LHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIIND 178

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K    K++  ++ G+D REG T+++SIK P P+F  QTK KL +S+ R+V ++  ++
Sbjct: 179 YARKQQIFKENDTNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSE 238

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
               +L E+P  A+ IV+K + A+  R AA++AR+LTRRK  L+I++LPGKLADCS RDP
Sbjct: 239 QFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSRDP 298

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
             SEL++VEGDSAGGS KQGR R  QAILPLRGK
Sbjct: 299 SISELYVVEGDSAGGSTKQGRDRHFQAILPLRGK 332


>gi|323146968|gb|ADX32777.1| DNA gyrase B subunit [endophytic bacterium 12(2011)]
          Length = 235

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/238 (43%), Positives = 152/238 (63%), Gaps = 19/238 (7%)

Query: 43  HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEV 98
           H+++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE+
Sbjct: 1   HLVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEI 60

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL--- 155
           +MT LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+    
Sbjct: 61  VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNR 120

Query: 156 ---------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
                     +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V
Sbjct: 121 VIEEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGV 179

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
           +I L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM+
Sbjct: 180 RIRLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQ 235


>gi|15551679|emb|CAC69427.1| DNA gyrase B subunit [Serratia proteamaculans]
          Length = 323

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 178/326 (54%), Positives = 237/326 (72%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G    PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-D 59

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F +  +F YD L  RL ELS LNS V + L DKR+ +       Y+
Sbjct: 60  QTGTTVRFWPSYETFTNNVEFEYDILAKRLHELSLLNSGVSVRLKDKRTDKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L   L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVVNLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|318066859|emb|CBY89141.1| DNA gyrase subunit B [Halomonas maura]
          Length = 349

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 197/352 (55%), Positives = 252/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+G ++E  + +G+   PL V G     TG+ V F PS   F  
Sbjct: 1   VSVVNALSEELKLTIWRQGQVHEQIYHHGVPAGPLGVVGKTE-QTGSRVHFKPSPQTFHN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+ +K  L 
Sbjct: 60  IEFHYDVLAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R++LTR +  Y+
Sbjct: 118 PVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRASLTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 DSEGLLKKTKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 ADYLVEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|148762459|dbj|BAF63931.1| DNA gyrase subunit B [Virgibacillus sp. Sa12-3XX]
          Length = 324

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 151/327 (46%), Positives = 221/327 (67%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVG SVVNALS+ L++ +  +  I+ + F  G+    + V G   + TGT  
Sbjct: 1   YKVSGGLHGVGASVVNALSTKLEVHVHLDNKIHYLGFKKGVPQGEIEVVGET-DVTGTTT 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F+P  +IF   +++YDTL  RLREL+FLN  + I++ DKR+ E       Y+GGI+++V
Sbjct: 60  HFVPDPEIFDTIEYDYDTLTQRLRELAFLNKGITITVEDKRTDEEPVSYF-YEGGIKSYV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++R K+ L   P   +G    IS+++A+++N+G+  ++  F NNI   +GG+H SG R
Sbjct: 119 EFINRTKEVLH-EPFYAEGEDQGISVEVAIQYNEGFASSLYSFANNIHTYEGGSHESGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           + LTR I  Y  K+   +++  ++ GDD REG T+++S+K PDP+F  QTK KL +SE R
Sbjct: 178 TGLTRVINDYARKNNLYRENDPNLSGDDVREGMTAIVSVKHPDPQFEGQTKTKLGNSEAR 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           ++ +S  ++  S +L E+P  AKIIV K L AS  R AA++AR+LTRRK  L+I++LPGK
Sbjct: 238 TITDSVFSEMFSKFLYENPSVAKIIVDKGLMASRARLAAKKARELTRRKSALEISNLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 LADCSSKDAKISELYIVEGDSAGGSAK 324


>gi|148762361|dbj|BAF63882.1| DNA gyrase subunit B [Halobacillus halophilus]
          Length = 325

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 155/328 (47%), Positives = 226/328 (68%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALSS L++ + R+G I+  +F  G+ +  L V G     TGT +
Sbjct: 1   YKVCGGLHGVGASVVNALSSKLEVFVHRDGKIHYQAFHRGVPEEDLKVIGDTEI-TGTRI 59

Query: 174 TFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P   IF+   ++N++TL  R REL+FLN  + IS+ DKR+ E   ++ +Y+GGI ++
Sbjct: 60  QFKPDEQIFTETVEYNFETLATRTRELAFLNRGLTISIEDKRTDEEP-VSYYYEGGIRSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+R ++ L   P  I+  +D+ISI++A+++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHLNRTREVLH-EPFFIESEQDDISIEIALQYNDGFASNLYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K    ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNNMFKDMDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V ++  ++G S +L E+P  A+I+V+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDALFSEGFSKFLFENPNMARIVVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +DP  SE+++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDPSISEIYVVEGDSAGGSAK 325


>gi|71666676|ref|XP_820295.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
           Brener]
 gi|70885633|gb|EAN98444.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 138/696 (19%), Positives = 245/696 (35%), Gaps = 66/696 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           A   + L  +D V  RP MY+G  D  S                      GL  ++ E+L
Sbjct: 4   ASKYKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEIL 63

Query: 50  DNAIDESLE--GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D      G    I V +   G  T+ ++G GIP    KE  +   E++   L    
Sbjct: 64  LNASDNIANKGGRMTYIRVHITEAGEITIENDGAGIPIVRSKEHKLYIPEMVFGHLLTSS 123

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--LDNPLVVTGSA 165
            ++  S     G HG G  + N LS    +  + +G  + MS+ + +     P V     
Sbjct: 124 NYDDTSQNAVAGRHGYGAKLTNILSHRFSVCCRTKGKEFHMSWHDHMRRATAPRVSNVDP 183

Query: 166 GNDTGTEVTFLPSSDIF-----SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                T V FLP  + F      +       L  R+ +L+ +  S++ISL          
Sbjct: 184 RERNLTRVKFLPDYERFGLDANKISHDMKRVLHKRIMDLAAMFPSIEISLNGVPFAFKSF 243

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                     A +         +  +P   +     I+   ++         +    N +
Sbjct: 244 ADY-------AMLYSSPTSSGEMPPAPFVYESRNGAIAFIPSLTAGT---RRIFGVVNGV 293

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +  +  L   + +        KKD + +  +     FT ++ +    P+F 
Sbjct: 294 VTHNGGTHCNAAQEVLQSSLENV---EKALKKDNKVIDTNRVLRHFTILVFLVQVQPKFD 350

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQ K +LVS      V       L  +L   P     +       +   +    A     
Sbjct: 351 SQNKARLVSVPTMPRV---PKQELMDFLLRMPFLEAHVNTVTGQLAQELNKEMGAGRRMS 407

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLRGKI 457
            K ++   +                 L + EGDSA   A+       +    + PLRGK+
Sbjct: 408 SKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKALAQNSLSSDQKRYTGVFPLRGKL 467

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNV      ++ + +E+  L  ALG  +G+   D  +LRY ++++MTD D DG+HI+ L+
Sbjct: 468 LNVRNKNLKRLKNCKELQELFCALGLELGKIYKDAEELRYQRLLVMTDQDADGSHIKGLV 527

Query: 518 LTFFFRQMPSLIHN--GFLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQ-SLSEEIE 573
           +  F    PSL++   GF+ I   P+  +  R KS       +    +     ++S   +
Sbjct: 528 INAFEALWPSLLNRNPGFISIFSTPIVKVRLRDKSTHSFFSLKEFHKWQKTHGNVSYTAK 587

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +       +               +  KD   +  +  +E+     + +   D +    
Sbjct: 588 YYKGLGTSTTAEG-----------KEYFKDMDKHTMRLVVERN-DHKLLDSVFDSQEVEW 635

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
               +     +  E        ++   D + K +  
Sbjct: 636 RKDWMTKANAYTGEVDIDRSKKTLTVPDFVHKEMVH 671


>gi|318066813|emb|CBY89118.1| DNA gyrase subunit B [Chromohalobacter nigrandesensis]
          Length = 349

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 202/352 (57%), Positives = 254/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS  LKL + R G +YE  + +G+ D PL V G     +GT+V F PS++ F+ 
Sbjct: 1   ISVVNALSEELKLTVWRAGQVYEQIYHHGVPDAPLEVVGKTE-QSGTQVNFKPSTETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS    E    Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLLDERSG--AEELFHYEGGLRAFVDHLNTNKATLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFETQREDGIGVEVAMQWNDTFSENIFCYTNNIPQNDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +   L
Sbjct: 178 ETEGLLKKAKVNTAGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTAVEQEMGRQL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 GDYLVEQPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|318066869|emb|CBY89146.1| DNA gyrase subunit B [Halomonas pantelleriensis]
          Length = 349

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 197/352 (55%), Positives = 253/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R G ++E  + +G+ + PL V G     +GT V F PS D F  
Sbjct: 1   VSVVNALSEELKLTIWRAGQVHEQIYHHGVPEGPLGVVGKTE-KSGTRVHFRPSPDTFGN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG+ AFV +L+ +K  + 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLRAFVDHLNTNKTAIN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R++LTR + +Y+
Sbjct: 118 PVFHFSAERDDGVGVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRASLTRTLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKAKVNTAGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQEMGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L E P EAK IV K+L+A+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 ADYLVEKPNEAKAIVNKMLEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|220680498|dbj|BAH10738.1| DNA gyrase subunit B [Nocardia asiatica]
          Length = 398

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 165/401 (41%), Positives = 239/401 (59%), Gaps = 30/401 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I R+G  +  ++ +      L   G     TGT + F    +IF    +N
Sbjct: 1   NALSSRLEAEIDRDGYHWSQTYKDSTP-GKLAQ-GEPTKKTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR---------------------------SPEPREI 221
           ++T+  RL+E++FLN  + I L D+R                             + +  
Sbjct: 59  FETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAEAPKHADESAPAEHKVKTR 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N I 
Sbjct: 119 TYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTIN 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F  
Sbjct: 179 THEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGEPQFEG 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L RR
Sbjct: 239 QTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVRR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI+NVE
Sbjct: 299 KSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 KARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 398


>gi|309253414|gb|ADO60722.1| gyrase subunit B [Micromonospora auratinigra]
          Length = 373

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 167/372 (44%), Positives = 242/372 (65%), Gaps = 8/372 (2%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ + + I + G+++   + N     PL   G + + TG+ V+F P 
Sbjct: 3   GLHGVGVSVVNALSTRMAVEIHKSGSVWRQQYHNSKP-TPLEK-GESTDRTGSAVSFWPD 60

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFV 233
           +D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y GGI  FV
Sbjct: 61  ADVFETVDFDFQTIYRRLQEMAFLTRGLTIHLLDERVPESEEGKLREVTFRYDGGIADFV 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G R
Sbjct: 121 RHLNASKNPIHKTVVEFGAEEEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFR 180

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+
Sbjct: 181 SALTSVVNRYGA-EKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVK 239

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S V+   ND L  W + +P EAK+I++K   A+  R AA++AR L RRK +L+  S+PGK
Sbjct: 240 SFVQRVCNDRLVDWFDRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGK 299

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E
Sbjct: 300 LADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNE 359

Query: 474 IGTLITALGTGI 485
           +  LITALGTGI
Sbjct: 360 VQALITALGTGI 371


>gi|51571573|emb|CAH18953.1| gyrase B [Corallococcus coralloides]
          Length = 365

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 184/359 (51%), Positives = 251/359 (69%), Gaps = 3/359 (0%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            VN LS W K+R++R G +YE S+  G+ +      G+     GT + F P + +    D
Sbjct: 10  CVNFLSEWFKVRVQRAGKVYEQSYARGVANGSPQEVGTTDKL-GTTIHFKPDTQVMETVD 68

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV YL++ K+ L   
Sbjct: 69  FNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISSFVEYLNKAKEALHDK 126

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + SY EK
Sbjct: 127 PVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAALTRTLNSYAEK 186

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VND L++
Sbjct: 187 GSLWKDLKDTPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGLVEQMVNDQLAS 246

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLADC  RDP +SE
Sbjct: 247 FLEENPPLAKKVVVKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQSRDPHESE 306

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           L++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KM +S EI TLITALGTGI
Sbjct: 307 LYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMPTSAEIVTLITALGTGI 365


>gi|310831536|ref|YP_003970179.1| putative DNA topoisomerase IIA [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 1101

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 133/697 (19%), Positives = 251/697 (36%), Gaps = 67/697 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHM 44
           +  + YD      +   + +  RP MYIG     +                    GL+ +
Sbjct: 1   MSKTKYD-----KVSQREHILLRPGMYIGSVSKNTEPMWLYEDNKMQKKDITFIPGLYKI 55

Query: 45  IYEVLDNAIDESLE-GYADIITVTLNMD-GSCTVSDNGR-GIPTDLHKEEGISAAEVIMT 101
             E++ NA D S+     + I + +N D G  +V +NG  GIP   H+        +I  
Sbjct: 56  YDEIIVNARDHSINDKSCNSIEIEVNTDEGYFSVYNNGDEGIPVKEHETHKTLIPSMIFG 115

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPL 159
            L     ++    + +GG++G+G    N  S   ++ +  K     +   + + +     
Sbjct: 116 ELLTSSNYDDSKKRTTGGMNGLGSKCSNVWSKKFEIEVQDKTNKKHFHQIWEDNMSVVNK 175

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDF--NYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
               S    +  +VT  P  + F ++    +    + R  +L+     V++         
Sbjct: 176 PKVTSKSTKSFVKVTCYPDLERFKIKSLKKHLPLFEKRAYDLALTTEKVKVKFN------ 229

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                     G    V  +            +I  + +       +   D  HE++  + 
Sbjct: 230 ----------GSLINVKNMQDFMDLYFPDTAKIVDTSNPRMHVGCIYLPDVGHESI-SYV 278

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I    GGTH + +       + S +      K     +     ++     ++  + +P
Sbjct: 279 NGICSYRGGTHCNYIVDM---VVKSLINDYIKKKDKDIKISPALIKDNLVFFINSVIDNP 335

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
            FSSQ+KE L +          +N      L +       I+K+++  +  +++ +  + 
Sbjct: 336 SFSSQSKETLTTKPSDFGTVYKLNKTFMTKLSKSG-----IIKQIISLAKFKESVKMTKT 390

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAILPLR 454
             R+  V+              +D  K  L+L EGDSA      G   + R      PL+
Sbjct: 391 DGRKTTVIRGIPKLEDANKAGTKDAHKCGLYLAEGDSALSMILSGLSSKDRNFYGAFPLK 450

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIG---QDSFDINKLRYHKIIIMTDADVDGA 511
           GK+LNV  A   +++ + EI  L   LG       +   + N LRY K+II+ D+DVDG+
Sbjct: 451 GKLLNVREASVKQIMGNDEISNLKKILGLRNEFKYEMDEEFNTLRYGKVIILCDSDVDGS 510

Query: 512 HIRTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           HI+ L+L  F    P+L+   GF+  +  P+   T+GK +    +    +++  + +   
Sbjct: 511 HIKGLILNMFHSMWPNLLKREGFITTMNTPIVKATKGKEILKFYNLTDYDNWRNDNNTKG 570

Query: 571 EIELFCDSKGVISKNDLRNFIDDAL--KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
               +    G     + + +  D     ID              +    I   F+ E   
Sbjct: 571 YYIKYYKGLGTSDSKEAKEYFQDIEGSLIDYTWDTNKSKTKGKTVSDDAIELAFSKELAD 630

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
           +    L +   N L   +   +      IN   I   
Sbjct: 631 KRKEWLINYDKN-LTINSNDRQIPVPDFINKDLIHFS 666


>gi|170177818|gb|ACB10235.1| GyrB [Aeromonas aquariorum]
          Length = 349

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 206/352 (58%), Positives = 266/352 (75%), Gaps = 3/352 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG G+ ++
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGMARE 349


>gi|318066857|emb|CBY89140.1| DNA gyrase subunit B [Halomonas magadiensis]
          Length = 349

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 195/352 (55%), Positives = 255/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I R+G ++E  + +G+   PL V G     +GT V F PS   F+ 
Sbjct: 1   VSVVNALSEELRLTIWRQGEVFEQIYHHGVPQAPLGVVGKTE-KSGTRVHFRPSPATFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+++K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFVDHLNKNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+W+D + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFNAEREDGVEVEVAMQWSDAFTENIFCYTNNIPQRDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAENLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L E P EAK IV K++DA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP +
Sbjct: 238 ADYLIEKPNEAKSIVNKMIDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSQ 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|318066851|emb|CBY89137.1| DNA gyrase subunit B [Halomonas halophila]
 gi|318066871|emb|CBY89147.1| DNA gyrase subunit B [Halomonas salina]
          Length = 349

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 197/352 (55%), Positives = 251/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R   ++E  + +G+   PL V G     +G+ V F PS + F  
Sbjct: 1   VSVVNALSEELKLTIWRNEQVHEQVYRHGVPVAPLSVVGKTE-QSGSRVHFKPSPETFHN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+ +K  L 
Sbjct: 60  IEFHYDVLAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R++LTR +  Y+
Sbjct: 118 PVFHFNVEREDGVGVEIAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRASLTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 AEYLVEKPNEAKSIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPGL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|318066805|emb|CBY89114.1| DNA gyrase subunit B [Chromohalobacter beijerinckii]
 gi|318066807|emb|CBY89115.1| DNA gyrase subunit B [Chromohalobacter canadensis]
          Length = 349

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 202/352 (57%), Positives = 255/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL + R G +YE  + +G+ D+PL V G     +GT+V F PS++ F+ 
Sbjct: 1   VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTE-KSGTQVNFKPSTETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS    E    Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLLDERSG--AEELFHYEGGLRAFVDHLNTNKATLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I +++A++WND + EN+ C+TNNIPQ DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFETQREDGIGVEMALQWNDTFSENIFCYTNNIPQSDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +   L
Sbjct: 178 ETEGLLKKAKVNTAGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTAVEQEMGRQL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 GDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|118201764|gb|ABK79695.1| DNA gyrase subunit b [Ketogulonicigenium vulgare]
          Length = 363

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 204/363 (56%), Positives = 264/363 (72%), Gaps = 6/363 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF------LPSSDIF 182
           NALS WL+LRI R+G+ Y   F +G +   +   G +  + GTEV F        +   F
Sbjct: 1   NALSEWLELRIWRDGHEYHARFEHGNVVQHVKDLGPSDGERGTEVRFLAAVRVAANEGTF 60

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S  +++YD L+ RLREL+FLNS V+I L D+R  +P +  ++Y GG+  FV YLDR K  
Sbjct: 61  SNLEYSYDVLERRLRELAFLNSGVRIVLEDERPAQPLKTELYYDGGVREFVKYLDRSKTA 120

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +M  PI + G R  I +++AM WND YHENVL FTNNIPQ+DGGTH++G R+ALTR IT 
Sbjct: 121 IMPEPIFMVGERAGIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHIAGFRAALTRTITK 180

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y + S  +KK+K  + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ V +
Sbjct: 181 YAQDSGIAKKEKIDLTGDDAREGMTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVGE 240

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ W EE+P  A++IV K+++A+  R+AAR+AR+LTRRK  LD+  + GKL DC+E+DP
Sbjct: 241 KLAEWFEENPQMARMIVGKIIEAAQAREAARKARELTRRKSALDVNFMAGKLKDCAEKDP 300

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELF+VEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+MLSS EIG L+ ALG
Sbjct: 301 SKTELFIVEGDSAGGSAQMGRDRLTQAILPLRGKILNVERARFDRMLSSAEIGNLVMALG 360

Query: 483 TGI 485
           TGI
Sbjct: 361 TGI 363


>gi|170177816|gb|ACB10234.1| GyrB [Aeromonas aquariorum]
          Length = 347

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 206/350 (58%), Positives = 264/350 (75%), Gaps = 3/350 (0%)

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RLR
Sbjct: 1   TIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLR 59

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           ELSFLNS V I L+D+R  + RE    Y+G I+AFV YL+++K P+          +D I
Sbjct: 60  ELSFLNSGVSIRLMDER--DGREAHFCYEGXIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 117

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K + 
Sbjct: 118 GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAA 177

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI
Sbjct: 178 SGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKI 237

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGG
Sbjct: 238 VVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGG 297

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           SAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+
Sbjct: 298 SAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGR 347


>gi|215271440|emb|CAR48209.1| gyrase B subunit [Vibrio alginolyticus]
 gi|215271442|emb|CAR48210.1| gyrase B subunit [Vibrio alginolyticus]
 gi|215271444|emb|CAR48211.1| gyrase B subunit [Vibrio alginolyticus]
 gi|215271446|emb|CAR48212.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 349

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 200/351 (56%), Positives = 270/351 (76%), Gaps = 3/351 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ FS  +F+YD 
Sbjct: 1   SEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNTEFHYDI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV +L+ +K P+++      
Sbjct: 60  LAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNKTPIIEKIFHFN 118

Query: 252 GSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
             R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   S
Sbjct: 119 SEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFS 178

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E
Sbjct: 179 KKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIE 238

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++V
Sbjct: 239 NPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIV 298

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           EGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 299 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 349


>gi|15551705|emb|CAC69413.1| DNA gyrase B subunit [Proteus vulgaris]
          Length = 323

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 184/326 (56%), Positives = 237/326 (72%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I R+G I++  + +G+ D+ L V G    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELTIHRDGKIHQQIYRHGVPDDRLKVIGDTE- 59

Query: 168 DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            +GT V F PS + F    +F YD L  RLRELSFLNS V I LIDKR  + RE    YK
Sbjct: 60  KSGTFVRFWPSLETFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKR--DNREDHFHYK 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL R+K P+ Q+       +D I +++ M WNDG+ ENV CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLSRNKTPIHQNVFYFSTEKDGIGVEVGMLWNDGFQENVYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + +Y++K   +KK K S  GDD REG  +V S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNNYMDKEGFNKKSKISATGDDAREGLIAVGSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +  LPGKLADCSERDP  SEL+LVEG
Sbjct: 298 LGGLPGKLADCSERDPAFSELYLVEG 323


>gi|148762371|dbj|BAF63887.1| DNA gyrase subunit B [Halobacillus locisalis]
          Length = 325

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 153/328 (46%), Positives = 219/328 (66%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ +   G I+  SF  G+ +  L V G   + TGT +
Sbjct: 1   YKVYGGLHGVGASVVNALSTKLEVYVHLNGKIHYQSFHRGVPEADLKVIGET-DVTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IFS    + ++TL +RLREL+FLN  + I++ DKR+ E       Y+GGI ++
Sbjct: 60  QFKPDPEIFSETQEYKFETLANRLRELAFLNKGLTITVQDKRTDEEPVDYY-YEGGIVSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+R ++ L      ++  +D ISI++A+++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHLNRTREALH-ETFFVEDEQDEISIEIAIQYNDGFASNIYTYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K    ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNNMFKDTDPNLTGDDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+  ++  ++G S +L E+P  AKIIV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTATDALFSEGFSKFLFENPNMAKIIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|323122044|gb|ADX30636.1| gyrase B [Verrucosispora sp. RtIII47]
          Length = 375

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 168/374 (44%), Positives = 243/374 (64%), Gaps = 8/374 (2%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ + + I ++G ++   + +     PL   G   + TG+ V+F 
Sbjct: 1   SGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYHHSKP-TPLDK-GEPTDRTGSAVSFW 58

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEA 231
           P  ++F   DF++ T+  RL+E++FL   + I+L+D+R       + RE+T  Y GGI  
Sbjct: 59  PDPNVFETVDFDFQTIYRRLQEMAFLTRGLTINLLDERVEEGEEGKIREVTFKYDGGIAD 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G
Sbjct: 119 FVRHLNASKNPIHRTVVEYGAEEEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ 
Sbjct: 179 FRAALTSVVNRYGA-EKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTP 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S V+   ND L  WL+ +P EAKII+ K   A+  R AA++AR L RRK +L+  S+P
Sbjct: 238 VKSFVQRVCNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L +
Sbjct: 298 GKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKN 357

Query: 472 QEIGTLITALGTGI 485
            E+  LITALGTGI
Sbjct: 358 NEVQALITALGTGI 371


>gi|159576551|dbj|BAF92824.1| DNA gyrase subunit B [Virgibacillus koreensis]
          Length = 325

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 161/328 (49%), Positives = 228/328 (69%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+GN++  +F  G+ +  L + G A +DTGT  
Sbjct: 1   YKVFGGLHGVGASVVNALSTELEVFVHRDGNVHYQAFSRGVPNEDLKIIGEA-DDTGTRT 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IF     +NY+TL +RLREL+FLN  + IS+ DKR+ +    T FY+GGI ++
Sbjct: 60  HFTPDPEIFKETRTYNYETLSNRLRELAFLNKGLSISIEDKRTDKEP-ETFFYEGGIRSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R K+ L   P   +   DNI++++A+++NDG+  N+  F NNI   +GGTH SG 
Sbjct: 119 VEHINRTKEVLH-EPFYAEKEEDNINVEVALQYNDGFASNIYSFANNINTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K++  ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNNLFKENDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R++ +S  ++  S +L E+P  A+I+V K L AS  R AA++AR+LTRRKG L+I+SLPG
Sbjct: 238 RTITDSAFSELFSKFLFENPDTARIVVDKGLMASRARIAAKKARELTRRKGALEISSLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS RD  KSEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSRDATKSELYIVEGDSAGGSAK 325


>gi|311788328|gb|ADQ12751.1| GyrB [Micromonospora fulviviridis]
          Length = 367

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 164/369 (44%), Positives = 241/369 (65%), Gaps = 8/369 (2%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ + + I ++G+++   + N     PL   G     TG+ V+F P  D
Sbjct: 1   HGVGVSVVNALSTRMAVEIHKDGSVWRQQYHNSKP-TPLEK-GETTGRTGSAVSFWPDPD 58

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSY 235
           +F   DF++ T+  RL+E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +
Sbjct: 59  VFETVDFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSA
Sbjct: 119 LNASKNPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S 
Sbjct: 179 LTSVVNRYGA-EKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSF 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+   N+ L  W + +P EAK+I++K   A+  R AA++AR L RRK +L+  S+PGKLA
Sbjct: 238 VQRVCNEWLVDWFDRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+ 
Sbjct: 298 DCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQ 357

Query: 476 TLITALGTG 484
            LITALGTG
Sbjct: 358 ALITALGTG 366


>gi|220680548|dbj|BAH10763.1| DNA gyrase subunit B [Nocardia otitidiscaviarum]
          Length = 399

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 165/402 (41%), Positives = 241/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ + + I R+G  +   + +      L + G     TGT  TF    +IF    +N
Sbjct: 1   NALSTRMHVEIDRDGYHWSQEYKDSKP-GKL-IKGDPTKRTGTTQTFWADPNIFETTVYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I+L D+R                             P+ + 
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSEGEITDEVVSETAEAPKHLDENTPPAEPKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E +V +++R K P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDYVKHINRTKTPIHNSIVSFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ DP+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVADPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E++R DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 EKSRIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 399


>gi|66271238|gb|AAY43832.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 309

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 167/311 (53%), Positives = 230/311 (73%), Gaps = 3/311 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S VES + + LS +L E+P EAK++  K++DA+   +AAR+AR++TR KG LD+A LP
Sbjct: 239 VKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAPEAARKAREMTRPKGALDLAGLP 298

Query: 412 GKLADCSERDP 422
           GKLADC E+DP
Sbjct: 299 GKLADCQEKDP 309


>gi|207678274|gb|ACI25151.1| DNA gyrase B [Phaeobacter sp. M5-4.1]
          Length = 349

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 211/349 (60%), Positives = 269/349 (77%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L+LRI R+G  +   F  G     L V G  G+ TGTEV FL S+D FS  +++++TL+ 
Sbjct: 1   LELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNLEYSFETLEK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLREL+FLNS V+I LID+R  E  E+ +FY+GG++ FV YLDR K P+M++PI I G +
Sbjct: 61  RLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPIYITGDK 120

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S  +KK+K
Sbjct: 121 DDIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKKEK 180

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ L+ W EE+P +
Sbjct: 181 VSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAEWFEENPNQ 240

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+FLVEGDS
Sbjct: 241 AKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVFLVEGDS 300

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           AGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L+ ALGT
Sbjct: 301 AGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVMALGT 349


>gi|330896901|gb|AEC48370.1| gyrase B [Streptomyces viridis]
          Length = 380

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 164/381 (43%), Positives = 236/381 (61%), Gaps = 20/381 (5%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+ + + +K +G  +   +  G+   PL       ++ GT VTF    DI
Sbjct: 1   GVGVSVVNALSTKVAVEVKTDGYRWTQDYKLGVPTAPLAR-HEPTDEHGTSVTFWADPDI 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFY 225
           F   +++++TL  R +E++FLN  ++I L D+R                  E + +   Y
Sbjct: 60  FETTEYSFETLSRRFQEMAFLNKGLRIRLTDERESAKATSGADEAGADEKAEVKSVDYHY 119

Query: 226 KGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282
           +GGI  FV Y   R    +  + I ++    +  +S+++AM+WN  Y E V  F N I  
Sbjct: 120 EGGIVDFVKYLNSRKGDVVHPTVIDLEAEDKDKLLSLEVAMQWNSSYTEGVYSFANIIHT 179

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  Q
Sbjct: 180 HEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQ 239

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++EV++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRK
Sbjct: 240 TKTKLGNTEVKTFVQKVVYEHLADWLDRNPNEAADIIRKGIQAATARVAARKARDLTRRK 299

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+
Sbjct: 300 GLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEK 359

Query: 463 ARFDKMLSSQEIGTLITALGT 483
           AR DK+L +QEI  LI+A GT
Sbjct: 360 ARIDKILQNQEIQALISAFGT 380


>gi|220680554|dbj|BAH10766.1| DNA gyrase subunit B [Nocardia pneumoniae]
          Length = 399

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 164/402 (40%), Positives = 240/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  I R+G  +  ++ +      L V G     TGT + F    ++F    +N
Sbjct: 1   NALSTRLEAEIDRDGYHWSQTYKDATP-GKL-VQGEPTKKTGTTIRFWADPEVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTIKLTDERVSDSEVIDEVVSETAEAPKHADQNGAAAEHKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPHKSEIYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 EKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 399


>gi|220680502|dbj|BAH10740.1| DNA gyrase subunit B [Nocardia beijingensis]
          Length = 399

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 165/402 (41%), Positives = 238/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +   G  +   + +      L + G     TGT + F P  +IF    FN
Sbjct: 1   NALSTRLQAEVDTGGYHWTQEYKDAKP-GKL-IQGEPTKRTGTTIRFWPDPEIFETTTFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSETAEAPKHAEDAAAPAEHKVKS 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 EKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 399


>gi|165968986|gb|ABY76049.1| topoisomerase IV subunit ParE [Parachlamydia acanthamoebae]
          Length = 478

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 148/516 (28%), Positives = 229/516 (44%), Gaps = 49/516 (9%)

Query: 74  CTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLHGVGVSVVNAL 131
            +V D GRGIP             VI     ++ G K+N   ++ S GL+GVG   VNAL
Sbjct: 2   ISVRDFGRGIPLGK----------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVNAL 51

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           SS   +R  REG   E  F  G L              GT V F+P  +IF    F  + 
Sbjct: 52  SSHFLVRSHREGKSMEAVFSQGKLIREKSQ--KTSEPDGTYVEFIPDKEIFKKFRFEPEY 109

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +Q RL   ++LN+ + +    +          + + G+   ++      +  +  P+  +
Sbjct: 110 IQKRLWHYAYLNTGLILEYNGQDI--------YSENGLLDLLNEEVT--EDRLYEPLYYR 159

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
           G      ++ A      Y E+   F N     DGGTHLS  R  + + +  Y +K+    
Sbjct: 160 GK----LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVNEYSKKN---- 211

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
                  G D REG    +++++ DP F SQTK KL ++E+R  +   V D +   L ++
Sbjct: 212 -----FQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDAVVNMLYKN 266

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP------KKS 425
              A  I+++++           A     ++    I+    KL DC           +K+
Sbjct: 267 SSTANSIIERIVFNEK-LRKELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDKADVGEKT 325

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
            +FL EGDSA  S    R    QA+  LRGK LNV   + D++  ++E+  L++AL    
Sbjct: 326 MIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNI-- 383

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
                DI  LRY K+I+ TDADVDG HIR LL+TFF      L+ NG L+I++ PL+ + 
Sbjct: 384 ---EDDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVR 440

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
             +   Y   EE  +  +       E+  F     +
Sbjct: 441 NREKTLYCYSEEERDKAIKQLKKGIEVTRFKGLGEI 476



 Score = 41.1 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 2/135 (1%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +  + QAV S      +   + +    K     N ++  + +    ++    +++     
Sbjct: 343 RDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNIEDDIENLRYQKVILA-TDA 401

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
            V    +      F        + +  +      +  +      +         D     
Sbjct: 402 DVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVRNREKTLYCYSEEER-DKAIKQ 460

Query: 730 GRKGISMQRYKGLGE 744
            +KGI + R+KGLGE
Sbjct: 461 LKKGIEVTRFKGLGE 475


>gi|118201762|gb|ABK79694.1| DNA gyrase subunit b [Ketogulonicigenium robustum]
          Length = 363

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 204/363 (56%), Positives = 265/363 (73%), Gaps = 6/363 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF------LPSSDIF 182
           NALS WL+LRI R+G+ Y   F +G +   +   G +  + GTEV F       P+   F
Sbjct: 1   NALSDWLELRIWRDGHEYHARFEHGDVVKHVEDLGPSDGERGTEVRFLASVRTGPNEGTF 60

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S  +++YD L+ RLREL+FLNS V+I L D+R  +P +  ++Y+GG+  FV YLDR K  
Sbjct: 61  SNLEYSYDVLERRLRELAFLNSGVRIVLEDERPAQPLKTELYYEGGVREFVKYLDRSKTS 120

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +M  PI + G R  I +++AM WND YHENVL FTNNIPQ+DGGTH++G R+ALTR IT 
Sbjct: 121 IMPDPIFMTGERGGIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHIAGFRAALTRTITK 180

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y + +  +KK+K  + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ V +
Sbjct: 181 YAQDTGIAKKEKIDLTGDDAREGMTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLVGE 240

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS W EE+P  A++IV K+++A+  R+AAR+AR+LTRRK  LD+  + GKL DC+E+D 
Sbjct: 241 KLSEWFEENPQMARMIVGKIIEAAQAREAARKARELTRRKTALDVNFMAGKLKDCAEKDA 300

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            K+ELF+VEGDSAGGSA+ GR R  QAILPLRGKILNVERARFD+MLSS EIG L+ ALG
Sbjct: 301 SKTELFIVEGDSAGGSAQMGRDRRTQAILPLRGKILNVERARFDRMLSSAEIGNLVMALG 360

Query: 483 TGI 485
           TGI
Sbjct: 361 TGI 363


>gi|308510362|ref|XP_003117364.1| CRE-TOP-2 protein [Caenorhabditis remanei]
 gi|308242278|gb|EFO86230.1| CRE-TOP-2 protein [Caenorhabditis remanei]
          Length = 1547

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 132/752 (17%), Positives = 250/752 (33%), Gaps = 80/752 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES--LEGYADIITV--- 66
            D  Q    L+ +  RP  YIG  +                  E   +   +  I +   
Sbjct: 64  EDIYQKKSQLEHILLRPDTYIGSVEYT----------------EKTPIRLKSKRIKIPYL 107

Query: 67  -TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
                +   +V +NG+GIP  LHK E +   E+I   L     +N    KV+GG +G G 
Sbjct: 108 YRFRKNNRISVYNNGKGIPVTLHKVEKVYVPELIFGTLLTSSNYNDDEKKVTGGRNGYGA 167

Query: 126 SVVNALSSWLKLRI-KREGN-IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            + N  S+   L    ++    ++ +++  +          + ++  T +TF P    F 
Sbjct: 168 KLCNIFSTKFTLETSSKDFKSQFKQTWVKNMTREKEPDIKKSDSEDFTRITFQPDLSKFK 227

Query: 184 VQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           + + + D       R  +++     V + L  +R P                 +    + 
Sbjct: 228 MDELDDDICHLMARRAYDVAGSTKGVTVFLNGERVPVKGFEDYVKMY------TSQFTND 281

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
              ++      G R  +++ L+           + F N+I    GG H+  +   +  + 
Sbjct: 282 GEPIKVAYEQVGDRWQVALALS-----EKGFQQVSFVNSIATTKGGRHVDYVADQMVAKF 336

Query: 301 TSYVEKSFGSKKDKRSVIGDD----------------CREGFTSVLSIKMPDPRFSSQTK 344
              +++              D                 +      ++  + +P F SQTK
Sbjct: 337 IDSIKRKLSKTAMNIKPFQIDPNSLNSSNTSICIHFQIKNHMWVFVNALIENPTFDSQTK 396

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR-RARDLTRRKG 403
           E +     +      +++  S            I   V+     +       +    +  
Sbjct: 397 ETMTLQSKQFGSTCTLSEKFSK-----AAGNVGITDAVMSWVRFKQMDDLNKKCSKTKTS 451

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKIL 458
            L          D   ++ ++  L L EGDSA      G A  GR +    + PLRGK+L
Sbjct: 452 KLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLAVVGRDK--FGVFPLRGKLL 509

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRT 515
           NV      ++  + EI  +I  LG    +     +    LRY K+++M D D DG+HI+ 
Sbjct: 510 NVRDGNMKQIADNAEINAMIKILGLQYKKKYETEDDFKTLRYGKMMVMADQDQDGSHIKG 569

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIEL 574
           L++ F     PSLI   F+     P+   ++GK            ++ +N  +       
Sbjct: 570 LVINFVHHFWPSLIQRNFVEEFITPIVKASKGKEEVSFFSIPEYSEWRMNTDNWKTYKIK 629

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  +  + + +  D   +   IK  Y   +     +   S     E    +   +
Sbjct: 630 YYKGLGTSTSKEAKEYFSDM--LRHRIKFKYGGAEDDMAVEMAFSKKKIDERKDWLTKWM 687

Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694
             K A +L  +AE+        + N D         V  + VL  +              
Sbjct: 688 QEKKARKLRGLAEEY-------LYNKDTRAVTFKDFVNRELVLFSNLDNERSIPCLVDGF 740

Query: 695 NRIEENYLTILSLICNGDKIKITGPCSLLDTI 726
              +   L       +  ++K+      +  I
Sbjct: 741 KPGQRKVLFACFKRADKREVKVAQLAGAVAEI 772


>gi|318066889|emb|CBY89156.1| DNA gyrase subunit B [Kushneria indalinina]
          Length = 349

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 199/352 (56%), Positives = 261/352 (74%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+  ++E  + +G+  +PL V G     +GT++ F PSS+ F+ 
Sbjct: 1   VSVVNALSEQLKLTIWRKNQVHEQIYKHGVPQSPLAVVGDTE-RSGTQIHFKPSSETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+R  + RE    Y+GG+ AFV +L+ ++  + 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLLDER--DGREELFHYEGGLRAFVDHLNTNRTTVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I++++AM+WND Y EN+ C+TNNIPQ+DGGTH++G R ALTR + SY+
Sbjct: 118 PVFHFNAEREDGIAVEVAMQWNDSYSENIFCYTNNIPQRDGGTHMAGFRGALTRSLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  ++  L
Sbjct: 178 EAEELQKKSKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMSRQL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E+P +AK IV K+LDA+  RDAAR+AR++TRRKG LDIA LPGKLADC E+DP +
Sbjct: 238 SDYLLENPNDAKAIVNKMLDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPTR 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|15551721|emb|CAC69409.1| DNA gyrase B subunit [Pectobacterium carotovorum]
          Length = 323

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 182/325 (56%), Positives = 241/325 (74%), Gaps = 3/325 (0%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGV VVNALS  LKL I R+G ++E ++ +G+   PL VTG   N
Sbjct: 1   KFDDNSYKVSGGLHGVGVFVVNALSEKLKLVIHRDGKLHEQTYKHGVAQAPLAVTGET-N 59

Query: 168 DTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  + +     Y 
Sbjct: 60  RTGTTVRFWPSHETFTNVVEFEYEILAKRLRELSFLNSGVSIRLIDER-EKDKADHYHYD 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+R+K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 119 GGIKAFVDYLNRNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 179 THLAGFRAAMTRTLNTYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 238

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VES +N+ L  +L E+P +AKI+V K++DA+  R+AAR+ARD+TRRKG LD
Sbjct: 239 LVSSEVKAAVESLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALD 298

Query: 407 IASLPGKLADCSERDPKKSELFLVE 431
           +A LPGKLADC ERDP  SEL+LVE
Sbjct: 299 LAGLPGKLADCQERDPALSELYLVE 323


>gi|330896993|gb|AEC48376.1| gyrase B [Streptomyces sp. 1209]
          Length = 382

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 169/381 (44%), Positives = 243/381 (63%), Gaps = 20/381 (5%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ + + +K +G+ +   +  G+   PL     A  +TGT VTF
Sbjct: 2   VSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLQR-HEATEETGTSVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPR 219
               DIF   D++++TL  R +E++FLN  ++I+L D+R                  E +
Sbjct: 61  WADGDIFETTDYSFETLSRRFQEMAFLNKGLRINLADERESAKATAGADEAGEDEKHEVK 120

Query: 220 EITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCF 276
            ++  Y+GGI  FV Y   R  + +  + I ++      ++S+++AM+WN GY E V  F
Sbjct: 121 SVSYHYEGGIVDFVKYLNSRKGEVIHPTVIDLEAEDRERHLSLEVAMQWNGGYTEGVYSF 180

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +
Sbjct: 181 ANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSE 240

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL ++EV++ V+  V + L+ WL+ +P EA  IV+K + A+  R AAR+AR
Sbjct: 241 PQFEGQTKTKLGNTEVKTFVQKVVYEHLADWLDRNPNEAADIVRKGIAAATARVAARKAR 300

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           DLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGK
Sbjct: 301 DLTRRKGLLETASLPGKLSDCQSNDPIKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGK 360

Query: 457 ILNVERARFDKMLSSQEIGTL 477
           ILNVE+AR D++L +QEI  +
Sbjct: 361 ILNVEKARIDRILQNQEIQAM 381


>gi|15551723|emb|CAC69394.1| DNA gyrase B subunit [Enterobacter cloacae]
          Length = 323

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 182/326 (55%), Positives = 239/326 (73%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+ + PL VTG    
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTE- 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS + F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+
Sbjct: 60  KTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ D G
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQLDVG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV+S VE  +N+ LS +L+E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKSAVEQQMNELLSDYLQENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +A LPGKLADC ERDP  SEL+LVEG
Sbjct: 298 LAGLPGKLADCQERDPALSELYLVEG 323


>gi|318066843|emb|CBY89133.1| DNA gyrase subunit B [Halomonas halmophila]
          Length = 349

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 198/352 (56%), Positives = 253/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+G ++E  + +G+ ++PL V G     +G+ V F PS++ F  
Sbjct: 1   VSVVNALSEELKLTIWRQGQVHEQVYRHGVAESPLSVVG-TTEQSGSRVHFRPSTETFHN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYDVLAKRLRELSFLNSGVAIRLTDERSGKE--ELFHYEGGLRAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R++LTR +  Y+
Sbjct: 118 PVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRASLTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|220680494|dbj|BAH10736.1| DNA gyrase subunit B [Nocardia araoensis]
          Length = 399

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 165/402 (41%), Positives = 238/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +   G  +   + +      L + G     TGT + F P  +IF    FN
Sbjct: 1   NALSTRLQAEVDTGGYHWTQEYKDAKP-GKL-IQGEPTKRTGTTIRFWPDPEIFETTTFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSETAEAPKHAEEGAAPAEHKVKS 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 EKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 399


>gi|318066835|emb|CBY89129.1| DNA gyrase subunit B [Halomonas cupida]
          Length = 349

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 198/352 (56%), Positives = 254/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R G ++E  + +G+   PL V G     TG+ V F PS + F+ 
Sbjct: 1   VSVVNALSEELKLTIWRAGQVHEQIYRHGVPQAPLGVVGQTE-KTGSRVHFRPSPETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F++D L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+ +K  L 
Sbjct: 60  IEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLKAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D +++++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFNAEREDGVAVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLLKKAKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SEYLVEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|164456671|dbj|BAF97828.1| gyrase B subunit [Vibrio gallicus]
          Length = 356

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 206/357 (57%), Positives = 274/357 (76%), Gaps = 3/357 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           + L I R G  +  ++ +G    PL V G + + TGTE+ F PS + F+  +F+Y+ L  
Sbjct: 1   VTLTINRGGKTHAQTYCHGEPQAPLAVIGDS-DKTGTEIRFWPSEETFTNIEFHYEILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I LID+R  E +     ++GGI+AFV +L+ +K P++Q        R
Sbjct: 60  RLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGIQAFVDHLNINKTPIIQKIFHFDSER 118

Query: 255 DN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           D+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR + ++++K   SKK 
Sbjct: 119 DDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRTLNTFMDKEGFSKKA 178

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P 
Sbjct: 179 KASTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPG 238

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EAKI+  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGD
Sbjct: 239 EAKIVCGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGD 298

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           SAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D +
Sbjct: 299 SAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 355


>gi|205363010|gb|ACI03946.1| DNA gyrase subunit B [Aliivibrio fischeri]
          Length = 351

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 204/353 (57%), Positives = 269/353 (76%), Gaps = 3/353 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  ++L I R G I++  + +G  + PL V G   + TGT++ F PS + F+   F Y
Sbjct: 1   ALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEETFTNVVFVY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  RLRELSFLNS V I L D R  E +     Y+GGI+AFV +L+R+K P+ Q    
Sbjct: 60  EILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFMYEGGIQAFVQHLNRNKTPIHQKVFH 118

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR + ++++K  
Sbjct: 119 FDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNTFMDKEG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L
Sbjct: 179 FSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+
Sbjct: 239 AENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPGLSELY 298

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           +VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITAL
Sbjct: 299 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITAL 351


>gi|207678276|gb|ACI25152.1| DNA gyrase B [Phaeobacter sp. M5-4.2]
          Length = 345

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 208/344 (60%), Positives = 265/344 (77%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
           WL+LRI R+G  +   F  G     L V G  G+ TGTEV FL S+D FS  +++++TL+
Sbjct: 1   WLELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNLEYSFETLE 60

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLREL+FLNS V+I LID+R  E  E+ +FY+GG++ FV YLDR K P+M++PI I G 
Sbjct: 61  KRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPIYITGD 120

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           +D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S  +KK+
Sbjct: 121 KDDIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKKE 180

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ L+ W EE+P 
Sbjct: 181 KVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAEWFEENPN 240

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+FLVEGD
Sbjct: 241 QAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVFLVEGD 300

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L
Sbjct: 301 SAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNL 344


>gi|269970291|gb|ACZ55130.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. luminescens]
          Length = 319

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 174/321 (54%), Positives = 233/321 (72%), Gaps = 4/321 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+  +PL V G    
Sbjct: 2   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE- 60

Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS D F +  +F +D L  RLRELSFLNS V I LIDKR+    E    Y+
Sbjct: 61  QTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRT--NIEDHFHYE 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 119 GGIKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+  TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 179 THLVGFRTXXTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDK 238

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 239 LVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALD 298

Query: 407 IASLPGKLADCSERDPKKSEL 427
           +A LPGKLADC ERDP  SEL
Sbjct: 299 LAGLPGKLADCQERDPALSEL 319


>gi|220680522|dbj|BAH10750.1| DNA gyrase subunit B [Nocardia elegans]
          Length = 398

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 163/401 (40%), Positives = 238/401 (59%), Gaps = 30/401 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS +   I R+G  +   + +      L V G   + TGT   F    D+F    +N
Sbjct: 1   NALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTGTTQRFWADPDVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDK---------------------------RSPEPREI 221
           ++T+  RL+E++FLN  + I+L D+                              + +  
Sbjct: 59  FETISRRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETAEAPKHDEGAATPEHKVKTR 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T  Y GG+E FV +++R K+P+  + +          +++AM+WN GY E+V  F N I 
Sbjct: 119 TYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGHELEVAMQWNSGYSESVHTFANTIN 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F  
Sbjct: 179 THEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVSEPQFEG 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L RR
Sbjct: 239 QTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARELVRR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NVE
Sbjct: 299 KSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 KARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 398


>gi|215271023|emb|CAR48190.1| gyrase B subunit [Vibrio campbellii]
 gi|215271223|emb|CAR48191.1| gyrase B subunit [Vibrio campbellii]
 gi|215271410|emb|CAR48194.1| gyrase B subunit [Vibrio campbellii]
          Length = 350

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 197/352 (55%), Positives = 270/352 (76%), Gaps = 3/352 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +F+YD
Sbjct: 1   LSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIEFHYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++     
Sbjct: 60  ILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHF 118

Query: 251 QGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
              R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   
Sbjct: 119 DFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGF 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L 
Sbjct: 179 SKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLI 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++
Sbjct: 239 ENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYI 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 299 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|193788047|dbj|BAG50524.1| DNA gyrase subunit B [bacterium GMW-10]
          Length = 346

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 207/349 (59%), Positives = 265/349 (75%), Gaps = 3/349 (0%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RLREL
Sbjct: 1   RRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLREL 59

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +
Sbjct: 60  SFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGV 117

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  G
Sbjct: 118 EVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASG 177

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V
Sbjct: 178 DDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVV 237

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSA
Sbjct: 238 NKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 297

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           KQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D
Sbjct: 298 KQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 346


>gi|51571609|emb|CAH18971.1| gyrase B [Myxococcus macrosporus]
          Length = 354

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 187/357 (52%), Positives = 251/357 (70%), Gaps = 3/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           N LS W K+R++R G +YE S+  GI D+P    G   +  GT + F P + +  + +FN
Sbjct: 1   NFLSEWFKVRVQRNGVVYEQSYAQGIPDSPPREVG-TTDKRGTHIAFKPDATVMELVEFN 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +DTL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV YL++ K+ L   PI
Sbjct: 60  FDTLSQRLRELAFLNAGLHITIRDERTNKEHD--FKFDGGISSFVEYLNKSKQTLHDKPI 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                R+ +++D+AM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + SY EK  
Sbjct: 118 AFSTEREGVTLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKGN 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VND L ++L
Sbjct: 178 LWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSFL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE P+ AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLADC  RDP +SEL+
Sbjct: 238 EETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQSRDPNESELY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           +VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITALGTGI
Sbjct: 298 IVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLITALGTGI 354


>gi|220680185|dbj|BAH10711.1| DNA gyrase subunit B [Nocardia africana]
          Length = 398

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 163/401 (40%), Positives = 238/401 (59%), Gaps = 30/401 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS +   I R+G  +   + +      L V G   + TGT   F    D+F    +N
Sbjct: 1   NALSSRMVTEIDRDGYHWSQEYKDAKP-GKL-VKGEPTDRTGTTQRFWADPDVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDK---------------------------RSPEPREI 221
           ++T+  RL+E++FLN  + I+L D+                              + +  
Sbjct: 59  FETISRRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETAEAPKHDEGASAPEHKVKTR 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T  Y GG+E FV +++R K+P+  + +          +++AM+WN GY E+V  F N I 
Sbjct: 119 TYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGHELEVAMQWNSGYSESVHTFANTIN 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F  
Sbjct: 179 THEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVSEPQFEG 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L RR
Sbjct: 239 QTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARELVRR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NVE
Sbjct: 299 KSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 KARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 398


>gi|318066821|emb|CBY89122.1| DNA gyrase subunit B [Halomonas alimentaria]
          Length = 349

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 196/352 (55%), Positives = 252/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L + R G++YE  + +G+   PL V G     +GT V F PS + F  
Sbjct: 1   VSVVNALSEELRLTVWRAGDVYEQLYRHGVPQAPLSVVGKTE-KSGTRVHFRPSPETFGN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            ++++D L  RLRELSFLNS V I LID+RS +       Y+GG++AFV +L+ +K  L 
Sbjct: 60  IEYHFDILAKRLRELSFLNSGVAIRLIDERSGKE--EVFHYEGGLKAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+W+D ++EN+ C+TNNIPQ+DGG HL+G R+ALTR +  Y+
Sbjct: 118 PVFHFNAEREDGVGVEVAMQWSDSFNENIFCYTNNIPQRDGGAHLAGFRAALTRTLNGYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 ESEGLLKKSKISTAGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMARLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 GEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|318066855|emb|CBY89139.1| DNA gyrase subunit B [Halomonas koreensis]
          Length = 349

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 197/352 (55%), Positives = 253/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R G ++E  + +G+   PL V G     +G+ V F PSS+ F  
Sbjct: 1   VSVVNALSEELKLTIWRNGLVHEQVYHHGVPAAPLDVVGKTE-QSGSRVHFRPSSETFHN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I LID+R+ +       Y+GG++AFV +L+ +K  L 
Sbjct: 60  IEFHYDVLAKRLRELSFLNSGVAIRLIDERTGKE--ELFHYEGGLKAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R++LTR +  Y+
Sbjct: 118 PVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRASLTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 DAEGLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 ADYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELFLVEGDSAGGSAKQGRERRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|220680584|dbj|BAH10781.1| DNA gyrase subunit B [Nocardia veterana]
          Length = 399

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 162/402 (40%), Positives = 237/402 (58%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ +   I R+G  +   + +      L V G   N TGT   F     +F    +N
Sbjct: 1   NALSTRMVTEIDRDGFHWTQEYKDAKP-GKL-VKGEPTNRTGTTQRFWADPAVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDK----------------------------RSPEPRE 220
           ++T+  RL+E++FLN  + I+L D+                               + + 
Sbjct: 59  FETIARRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETADAPKHDDGESQAPEQKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+P+  + +          +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVSEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 EKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 399


>gi|195926962|dbj|BAG68368.1| gyrase B [Campylobacter showae]
          Length = 339

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 162/344 (47%), Positives = 232/344 (67%), Gaps = 5/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L + IKR+G ++   F  GI  + L V  +  N TGT+V F P   IF V +
Sbjct: 1   VVNALSKKLVVNIKRDGKLHRQEFSKGIPQSDLEVIKNT-NRTGTQVEFWPDDSIFEVTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ + L  R REL++LN  + I+  D+R+   R+ +  Y+GG+E+FV+  D +K   +  
Sbjct: 60  FDDEILTKRFRELAYLNPKITINFKDQRNG--RKESFHYEGGLESFVT--DLNKNEAVSK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  +++ +D A+ +ND Y EN+L F NNI   DGGTH +G R+ LTR IT+Y+  
Sbjct: 116 AVSFSGGEEDVLVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYIAA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL SS V+ +V+  V + LS 
Sbjct: 176 NAAAREKDTKITGEDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFEVLSK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EA+ I++K L A+  R+AA++ARDLTR+K  L I +LPGKLADC  +DP  SE
Sbjct: 236 YFEENPIEARAIMEKALMAARGREAAKKARDLTRKKEGLSIGTLPGKLADCQSKDPTISE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           L+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L 
Sbjct: 296 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILK 339


>gi|323146988|gb|ADX32787.1| DNA gyrase B subunit [endophytic bacterium 17(2011)]
 gi|323147008|gb|ADX32797.1| DNA gyrase B subunit [endophytic bacterium 28(2011)]
          Length = 236

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 105/239 (43%), Positives = 153/239 (64%), Gaps = 19/239 (7%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVI 99
           +++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE++
Sbjct: 1   LVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIV 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---- 155
           MT LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+     
Sbjct: 61  MTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRV 120

Query: 156 --------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
                    +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+
Sbjct: 121 IEEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVR 179

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           I L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM+WN
Sbjct: 180 IRLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQWN 236


>gi|60459494|gb|AAX20083.1| DNA gyrase subunit B [Leptospira genomosp. 1 serovar Pingchang]
          Length = 141

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/142 (53%), Positives = 103/142 (72%), Gaps = 1/142 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  ++GLH M+YEV+DN++DE++ G+   I +++  D    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDDTGLHKMVYEVVDNSVDEAMAGHCTEIGISILPDNIIEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L 
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLI 119

Query: 137 LRIKREGNIYEMSFINGILDNP 158
           + + ++G  Y   +  GI  +P
Sbjct: 120 VEVHQKGKFYTQKYEKGIPVSP 141


>gi|294963310|gb|ADF50142.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 365

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 171/363 (47%), Positives = 253/363 (69%), Gaps = 2/363 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS+ L + + R+G I+  ++  G+    + V     + TGT   F+P  +IF+    
Sbjct: 1   VNALSTTLDVTVHRDGKIHYQAYERGVPMADVEVI-GDTDTTGTITHFVPDPEIFTETTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YD L +R+REL+FL   V+I++ DKR  + R+    Y+GGI+++V YL+R K+ + + 
Sbjct: 60  YDYDLLSNRVRELAFLTKGVKITIEDKREEKERKNEYCYEGGIKSYVEYLNRSKEVVHEE 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI I+G++D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR I  Y  K
Sbjct: 120 PIYIEGTKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARK 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE R++ ++  ++ L  
Sbjct: 180 KGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALET 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ ++ K L A+  R AA++AR+LTRRK  L+I++LPGKLADCS +DP  SE
Sbjct: 240 FLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG
Sbjct: 300 LYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIG 359

Query: 487 QDS 489
           +D 
Sbjct: 360 EDF 362


>gi|207107924|dbj|BAG71974.1| DNA gyrase subunit B [Gordonia sputi]
          Length = 407

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 175/410 (42%), Positives = 242/410 (59%), Gaps = 34/410 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I   G  +E ++       PL V G+A   TGT V F    +IF 
Sbjct: 1   GISVVNALSTKVELEINYGGYHWEQTYNYAKP-GPL-VQGAATRKTGTTVRFWADPEIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------------------------- 216
              ++ +T+  RL+E++FLN  + I+L D+R                             
Sbjct: 59  TTTYSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDEDTAEKPKTAEEEAVA 118

Query: 217 ----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               +PR  T  Y  G+  ++ +L+R K P+ QS I          +++AM+WN GY E+
Sbjct: 119 PTVTKPRTRTYHYPDGLIDYIKHLNRTKTPIHQSVIGFTAKGTGHEVEIAMQWNSGYSES 178

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S+
Sbjct: 179 VHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLSGDDIREGLAAVISV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P EAKIIVKK +D++  R AA
Sbjct: 239 KVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLGHWFEANPAEAKIIVKKAVDSAQARLAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAILP
Sbjct: 299 RKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++
Sbjct: 359 IRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHKIVL 407


>gi|193788043|dbj|BAG50522.1| DNA gyrase subunit B [bacterium GMW-4]
 gi|193788049|dbj|BAG50525.1| DNA gyrase subunit B [bacterium GMW-12]
 gi|193788055|dbj|BAG50528.1| DNA gyrase subunit B [bacterium GMW-23]
          Length = 346

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 206/349 (59%), Positives = 265/349 (75%), Gaps = 3/349 (0%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLREL
Sbjct: 1   RRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLREL 59

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +
Sbjct: 60  SFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGV 117

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  G
Sbjct: 118 EVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASG 177

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V
Sbjct: 178 DDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVV 237

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSA
Sbjct: 238 NKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 297

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           KQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D
Sbjct: 298 KQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 346


>gi|323522322|gb|ADX94788.1| gyrase B [Serratia symbiotica]
          Length = 320

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 181/323 (56%), Positives = 238/323 (73%), Gaps = 4/323 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYGHGEPQAPLKVVGET-D 59

Query: 168 DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            TGT V F PS   F+   +F YD L  RLRELSFLNS V I L DKR+   RE    Y+
Sbjct: 60  QTGTMVRFWPSYQTFTNVTEFEYDILAKRLRELSFLNSGVSIRLKDKRTD--REDHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 118 GGIKAFVEYLNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNSYMEKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD
Sbjct: 238 LVSSEVKTAVETLMNEKLVDYLMENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALD 297

Query: 407 IASLPGKLADCSERDPKKSELFL 429
           +A LPGKLADC ERDP  SEL+L
Sbjct: 298 LAGLPGKLADCQERDPALSELYL 320


>gi|261488468|emb|CAU94909.1| DNA gyrase subunit B [Roseateles terrae]
          Length = 339

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 175/342 (51%), Positives = 235/342 (68%), Gaps = 22/342 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++REG +
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRREGKV 59

Query: 146 YEMSFINGILD------------NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTL 192
           +++ F  G+              +P+ V G   +  GTEV FLP ++IF+    F+YD L
Sbjct: 60  HQLEFRKGVPQDRVIEVRDGFETSPMKVVGDT-DKRGTEVHFLPDTEIFTQNHEFHYDIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I L D+R+ +       Y GG+  FV ++++ K  L  +    QG
Sbjct: 119 AKRLRELSFLNNGVKIRLADERNNKE--DNFAYAGGVRGFVEFINKGKTTLHPNIFHAQG 176

Query: 253 SRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +      NI ++++M+WNDG++ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 DKMSDQNTNIGVEVSMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR  VE  V   L+ W
Sbjct: 237 ELAKKAKVDVSGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAAKLNDW 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           L E+P++AKII  K++DA+  R+AAR+AR++TRRKGVLD   
Sbjct: 297 LLENPIDAKIICGKIVDAARAREAARKAREMTRRKGVLDGLG 338


>gi|270717092|ref|ZP_06223222.1| DNA gyrase, B subunit [Haemophilus influenzae HK1212]
 gi|270315571|gb|EFA27782.1| DNA gyrase, B subunit [Haemophilus influenzae HK1212]
          Length = 125

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/126 (67%), Positives = 103/126 (81%), Gaps = 1/126 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MS+   N +Y A SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+
Sbjct: 1   MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 60  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119

Query: 121 HGVGVS 126
           HGVGVS
Sbjct: 120 HGVGVS 125


>gi|307704602|ref|ZP_07641505.1| DNA gyrase subunit B [Streptococcus mitis SK597]
 gi|307621847|gb|EFO00881.1| DNA gyrase subunit B [Streptococcus mitis SK597]
          Length = 193

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 91/188 (48%), Positives = 122/188 (64%), Gaps = 5/188 (2%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF    YKVS
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TGT V F P
Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178

Query: 178 SSDIFSVQ 185
             +IF+  
Sbjct: 179 DPEIFTET 186


>gi|82400104|gb|ABB72791.1| DNA gyrase beta subunit [Shewanella sp. G5]
          Length = 313

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 174/316 (55%), Positives = 232/316 (73%), Gaps = 4/316 (1%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L++ I+R G +YE  + +G+ D P+  
Sbjct: 1   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKE 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A   TGTE+ F PS D FS  +F+++ L  R+RELSFLNS V I L+D+R  +    
Sbjct: 61  IGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--E 117

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNI 280
              Y+GGI AFV YL+R+K P+ +        R++ I++++AM+WNDGY EN+ CFTNNI
Sbjct: 118 FFKYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNI 177

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           PQ+DGGTHL G RSALTR + SY+E    +KK K S  GDD REG T+V+S+K+PDP+FS
Sbjct: 178 PQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFS 237

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+IV K++DA+  R+AAR+AR++TR
Sbjct: 238 SQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTR 297

Query: 401 RKGVLDIASLPGKLAD 416
           RKG LD+  LPGKLAD
Sbjct: 298 RKGALDLGGLPGKLAD 313


>gi|193788053|dbj|BAG50527.1| DNA gyrase subunit B [bacterium GMW-20]
 gi|193788069|dbj|BAG50535.1| DNA gyrase subunit B [bacterium GMW-40]
          Length = 346

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 203/349 (58%), Positives = 263/349 (75%), Gaps = 3/349 (0%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLREL
Sbjct: 1   RRNGHVYEQTYHLGEPQAPLKQIGDSS-GTGTEVRFWPSPTIFTDTLYHYEILAKRLREL 59

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+           D I +
Sbjct: 60  SFLNSGVSIRLHDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEHDGIGV 117

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  G
Sbjct: 118 EVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASG 177

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V
Sbjct: 178 DDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAKIVV 237

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSA
Sbjct: 238 NKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 297

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           KQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D
Sbjct: 298 KQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 346


>gi|323147002|gb|ADX32794.1| DNA gyrase B subunit [endophytic bacterium 25(2011)]
          Length = 236

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 106/239 (44%), Positives = 153/239 (64%), Gaps = 19/239 (7%)

Query: 45  IYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVIM 100
           ++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE++M
Sbjct: 1   VFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIVM 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL----- 155
           T LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+      
Sbjct: 61  TELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVI 120

Query: 156 -------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
                   +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I
Sbjct: 121 EEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRI 179

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
            L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM+WND
Sbjct: 180 RLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQWND 236


>gi|298364142|gb|ADI79214.1| GyrB [Micromonospora sp. RtII195]
          Length = 368

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 166/371 (44%), Positives = 238/371 (64%), Gaps = 8/371 (2%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ + + I + G ++   + +     PL   G   + TG+ V+F P 
Sbjct: 1   GLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHHSKP-TPLEK-GEPTDPTGSAVSFWPD 58

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFV 233
            D+F   DF++ T+  RL+E++FL   + I L+D+R       + RE+T  Y+GGI  FV
Sbjct: 59  PDVFETVDFDFQTIYRRLQEMAFLTRGLTIHLLDERVAEGEEGKLREVTFQYEGGIADFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+  K P+ ++ I      + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R
Sbjct: 119 RHLNASKSPMHKTVIEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+
Sbjct: 179 SALTSVVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S V+   N+ L  WL+ +P EAKII+ K   A+  R AA++AR L RRK +L+  S+PGK
Sbjct: 238 SFVQRVCNEWLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E
Sbjct: 298 LADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNE 357

Query: 474 IGTLITALGTG 484
           +  LITALGTG
Sbjct: 358 VQALITALGTG 368


>gi|267151|sp|P30190|TOP2_TRYCR RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|162307|gb|AAA85575.1| DNA topoisomerase II [Trypanosoma cruzi]
 gi|737876|prf||1923363A DNA topoisomerase II
          Length = 1232

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 138/696 (19%), Positives = 239/696 (34%), Gaps = 66/696 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           A   + L  +D V  RP MY+G  D  S                      GL  ++ E+L
Sbjct: 4   ASKYKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEIL 63

Query: 50  DNAIDESLE--GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D      G    I V +   G  T+ ++G GIP    KE  +   E++   L    
Sbjct: 64  LNASDNIANKGGRMTYIRVHITEAGEITIENDGAGIPIVRSKEHKLYIPEMVFGHLLTSS 123

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--LDNPLVVTGSA 165
            ++  S     G HG G  + N LS    +  + +G  + MS+ + +     P V     
Sbjct: 124 NYDDTSQNAVAGRHGYGAKLTNILSHRFSVCCRTKGKEFHMSWHDHMRRATAPRVSNVDP 183

Query: 166 GNDTGTEVTFLPSSDIF-----SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                T V FLP  + F      +       L  R+ +L+ +  S++ISL          
Sbjct: 184 KEKNLTRVKFLPDYERFGLDANKISHDMKRVLHKRIMDLAAMFPSIEISLNGVPFAFKSF 243

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                     +    +                   N +I        G    +    N +
Sbjct: 244 ADYAMLYSSPSSSGEMPPAP---------FVYESRNGAIAFIPSLTAG-TRRIFGVVNGV 293

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +  +  L   + S   +    K +K        R     V  +++  P+F 
Sbjct: 294 VTHNGGTHCNAAQEVLQSSLES--VEKALKKDNKVIDTNRVLRHFMILVFLVQVQ-PKFD 350

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQ K +LVS      V       L  +L   P     +       +   +    A     
Sbjct: 351 SQNKARLVSVPTMPRV---PRQELMDFLLRMPFLEAHVNTVTGQLADELNKEMGAGRRMS 407

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLRGKI 457
            K ++   +                 L + EGDSA   A+       +    + PLRGK+
Sbjct: 408 SKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKALAQNSLSSDQKRYTGVFPLRGKL 467

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNV      ++ + +E+  L  ALG  +G+   D  +LRY ++++MTD D DG+HI+ L+
Sbjct: 468 LNVRNKNLKRLKNCKELQELFCALGLELGKIYKDAEELRYQRLLVMTDQDADGSHIKGLV 527

Query: 518 LTFFFRQMPSLIHN--GFLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQ-SLSEEIE 573
           +  F    PSL++   GF+ I   P+  +  R KS       +    +     ++S   +
Sbjct: 528 INAFEALWPSLLNRNPGFISIFSTPIVKVRLRDKSTHSFFSLKEFHKWQKTHGNVSYTAK 587

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +       +               +  KD   +  +  +E+     + +   D +    
Sbjct: 588 YYKALGTSTTAEG-----------KEYFKDMDKHTMRLVVERN-DHKLLDSVFDSQEVEW 635

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
               +     +  E        ++   D + K +  
Sbjct: 636 RKDWMTKANAYTGEVDIDRSKKTLTVPDFVHKEMVH 671


>gi|318066817|emb|CBY89120.1| DNA gyrase subunit B [Chromohalobacter sarecensis]
          Length = 349

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 204/352 (57%), Positives = 255/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL + R G +YE  + +G+ D+PL V G     +GT+V F PS++ FS 
Sbjct: 1   VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTE-KSGTQVNFKPSTETFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS    E    Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLLDERSG--AEELFHYEGGLRAFVDHLNTNKATLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFETQREDGIGVEVAMQWNDTFSENIFCYTNNIPQNDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +   L
Sbjct: 178 ETEGLLKKAKVNTAGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTAVEQEMGRQL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 GDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSVEVGT 349


>gi|215271432|emb|CAR48205.1| gyrase B subunit [Vibrio parahaemolyticus]
 gi|215271434|emb|CAR48206.1| gyrase B subunit [Vibrio parahaemolyticus]
 gi|215271436|emb|CAR48207.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 350

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 202/352 (57%), Positives = 272/352 (77%), Gaps = 3/352 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  + L I R G+I+  ++ +G  + PL V G   + TGT++ F PS++ FS  +F+YD
Sbjct: 1   LSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFSNTEFHYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV +L+ +K P+++     
Sbjct: 60  ILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQHLNTNKTPIIEKIFHF 118

Query: 251 QGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
              R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   
Sbjct: 119 DLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGF 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L 
Sbjct: 179 SKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLV 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++
Sbjct: 239 ENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYI 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 299 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|318066891|emb|CBY89157.1| DNA gyrase subunit B [Kushneria marisflavi]
          Length = 349

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 196/352 (55%), Positives = 261/352 (74%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+  ++E  + +G+  +PL + G     +GT++ F PS++ F+ 
Sbjct: 1   VSVVNALSEQLKLTIWRKNQVHEQIYHHGVPQSPLAIVGDTE-RSGTQIHFKPSAETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+R  + RE    Y+GG+ AFV +L+ ++  + 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLLDER--DGREELFHYEGGLRAFVDHLNTNRTTIN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I++++AM+WND Y EN+ C+TNNIPQ+DGGTH++G R ALTR + SY+
Sbjct: 118 PVFHFNAEREDGIAVEVAMQWNDSYSENIFCYTNNIPQRDGGTHMAGFRGALTRSLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  ++  L
Sbjct: 178 EAEELQKKSKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMSRQL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E+P +AK IV K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC E+DP +
Sbjct: 238 SDYLLENPADAKAIVNKMIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPTR 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|220680570|dbj|BAH10774.1| DNA gyrase subunit B [Nocardia takedensis]
          Length = 398

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 162/401 (40%), Positives = 237/401 (59%), Gaps = 30/401 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +  +G  +   + +      L + G A   TGT + F    ++F    +N
Sbjct: 1   NALSTRLEAEVDTDGYHWTQQYKDAKP-GKL-IQGEATERTGTTIRFWADPEVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR---------------------------SPEPREI 221
           ++T+  RL+E++FLN  + I L D+R                             + +  
Sbjct: 59  FETVSRRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAEAPKQGDTAAPAEHKVKTR 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T  Y GG+E FV +++R K P+  S +   G      +++AM+WN GY E+V  F N I 
Sbjct: 119 TYHYPGGLEDFVRHINRTKSPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTIN 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F  
Sbjct: 179 THEGGTHEEGFRAALTTVVNKYAKDKRLLKEKDGNLTGDDIREGLAAIVSVKVGEPQFEG 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L RR
Sbjct: 239 QTKTKLGNTEVKSFVQKTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVRR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NVE
Sbjct: 299 KSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 KARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 398


>gi|108946666|gb|ABG23681.1| gyrase subunit B [Leptospira santarosai]
 gi|108946668|gb|ABG23682.1| gyrase subunit B [Leptospira santarosai]
 gi|108946670|gb|ABG23683.1| gyrase subunit B [Leptospira santarosai]
 gi|108946672|gb|ABG23684.1| gyrase subunit B [Leptospira santarosai]
          Length = 137

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 76/138 (55%), Positives = 102/138 (73%), Gaps = 1/138 (0%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           L+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V 
Sbjct: 1   LEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIIEVK 59

Query: 78  DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137
           DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L++
Sbjct: 60  DNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEV 119

Query: 138 RIKREGNIYEMSFINGIL 155
            + ++G IY   +  GI 
Sbjct: 120 EVHQKGKIYTQKYEKGIP 137


>gi|71650226|ref|XP_813815.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
           Brener]
 gi|70878735|gb|EAN91964.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1230

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 138/696 (19%), Positives = 245/696 (35%), Gaps = 66/696 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           A   + L  +D V  RP MY+G  D  S                      GL  ++ E+L
Sbjct: 4   ASKYKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEIL 63

Query: 50  DNAIDESLE--GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D      G    I V +   G  T+ ++G GIP    KE  +   E++   L    
Sbjct: 64  LNASDNIANKGGRMTYIRVHITEAGEITIENDGAGIPIVRSKEHKLYIPEMVFGHLLTSS 123

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--LDNPLVVTGSA 165
            ++  S     G HG G  + N LS    +  + +G  + MS+ + +     P V     
Sbjct: 124 NYDDTSQNAVAGRHGYGAKLTNILSHRFSVCCRTKGKEFHMSWHDHMRRATAPRVSNVDP 183

Query: 166 GNDTGTEVTFLPSSDIF-----SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                T V FLP  + F      +       L  R+ +L+ +  S++ISL          
Sbjct: 184 REKNLTRVKFLPDYERFGLDANKISHDMKRVLHKRIMDLAAMFPSIEISLNGVPFAFKSF 243

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                     A +         +  +P   +     I+   ++         +    N +
Sbjct: 244 ADY-------AMLYSSPTSSGEMPPAPFVYESRNGAIAFIPSLTAGT---RRIFGVVNGV 293

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +  +  L   + +        KKD + +  +     FT ++ +    P+F 
Sbjct: 294 VTHNGGTHCNAAQEVLQSSLENV---EKALKKDNKVIDTNRVLRHFTILVFLVQVQPKFD 350

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQ K +LVS      V       L  +L   P     +       +   +    A     
Sbjct: 351 SQNKARLVSVPTMPRV---PRQELMDFLLRMPFLEAHVNTVTGQLADELNKEMGAGRRMS 407

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLRGKI 457
            K ++   +                 L + EGDSA   A+       +    + PLRGK+
Sbjct: 408 SKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKALAQNSLSSDQKRYTGVFPLRGKL 467

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNV      ++ + +E+  L  ALG  +G+   D  +LRY ++++MTD D DG+HI+ L+
Sbjct: 468 LNVRNKNLKRLKNCKELQELFCALGLELGKIYKDAEELRYQRLLVMTDQDADGSHIKGLV 527

Query: 518 LTFFFRQMPSLIHN--GFLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQ-SLSEEIE 573
           +  F    PSL++   GF+ I   P+  +  R KS       +    +     ++S   +
Sbjct: 528 INAFEALWPSLLNRNPGFISIFSTPIVKVRLRDKSTHSFFSLKEFHKWQKTHGNVSYTAK 587

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +       +               +  KD   +  +  +E+     + +   D +    
Sbjct: 588 YYKGLGTSTTAEG-----------KEYFKDMDKHTMRLVVERN-DHKLLDSVFDSQEVEW 635

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
               +     +  E        ++   D + K +  
Sbjct: 636 RKDWMTKANAYTGEVDIDRSKKTLTVPDFVHKEMVH 671


>gi|322816271|gb|EFZ24640.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 138/696 (19%), Positives = 239/696 (34%), Gaps = 66/696 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           A   + L  +D V  RP MY+G  D  S                      GL  ++ E+L
Sbjct: 4   ASKYKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEIL 63

Query: 50  DNAIDESLE--GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D      G    I V +   G  T+ ++G GIP    KE  +   E++   L    
Sbjct: 64  LNASDNIANKGGRMTYIRVHITEAGEITIENDGAGIPIVRSKEHKLYIPEMVFGHLLTSS 123

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI--LDNPLVVTGSA 165
            ++  S     G HG G  + N LS    +  + +G  + MS+ + +     P V     
Sbjct: 124 NYDDTSQNAVAGRHGYGAKLTNILSHRFSVCCRTKGKEFHMSWHDHMRRATAPRVSNVDP 183

Query: 166 GNDTGTEVTFLPSSDIF-----SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                T V FLP  + F      +       L  R+ +L+ +  S++ISL          
Sbjct: 184 KEKNLTRVKFLPDYERFGLDANKISHDMKRVLHKRIMDLAAMFPSIEISLNGVPFAFKSF 243

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                     +    +                   N +I        G    +    N +
Sbjct: 244 ADYAMLYSSPSSSGEMPPAP---------FVYESRNGAIAFIPSLTAG-TRRIFGVVNGV 293

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +  +  L   + S   +    K +K        R     V  +++  P+F 
Sbjct: 294 VTHNGGTHCNAAQEVLQSSLES--VEKALKKDNKVIDTNRVLRHFMILVFLVQVQ-PKFD 350

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQ K +LVS      V       L  +L   P     +       +   +    A     
Sbjct: 351 SQNKARLVSVPTMPRV---PRQELMDFLLRMPFLEAHVNTVTGQLADELNKEMGAGRRMS 407

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLRGKI 457
            K ++   +                 L + EGDSA   A+       +    + PLRGK+
Sbjct: 408 SKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKALAQNSLSSDQKRYTGVFPLRGKL 467

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNV      ++ + +E+  L  ALG  +G+   D  +LRY ++++MTD D DG+HI+ L+
Sbjct: 468 LNVRNKNLKRLKNCKELQELFCALGLELGKIYKDAEELRYQRLLVMTDQDADGSHIKGLV 527

Query: 518 LTFFFRQMPSLIHN--GFLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQ-SLSEEIE 573
           +  F    PSL++   GF+ I   P+  +  R KS       +    +     ++S   +
Sbjct: 528 INAFEALWPSLLNRNPGFISIFSTPIVKVRLRDKSTHSFFSLKEFHKWQKTHGNVSYTAK 587

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
            +       +               +  KD   +  +  +E+     + +   D +    
Sbjct: 588 YYKGLGTSTTAEG-----------KEYFKDMDKHTMRLVVERN-DHKLLDSVFDSQEVEW 635

Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
               +     +  E        ++   D + K +  
Sbjct: 636 RKDWMTKANAYTGEVDIDRSKKTLTVPDFVHKEMVH 671


>gi|318066881|emb|CBY89152.1| DNA gyrase subunit B [Halomonas venusta]
          Length = 349

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 194/352 (55%), Positives = 256/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I R+G ++E  + +G+   PL + G     +GT V F PS + F+ 
Sbjct: 1   VSVVNALSEELRLTIWRQGEVFEQVYQHGVPQAPLGIVGKTE-KSGTRVHFRPSPNTFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+++K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFVDHLNKNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+W++ + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFNAVREDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAQGLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP +
Sbjct: 238 ADYLIEKPNEAKSIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSQ 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|220680530|dbj|BAH10754.1| DNA gyrase subunit B [Nocardia higoensis]
          Length = 399

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 165/402 (41%), Positives = 240/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS +++ I  +G  +  ++ +      L V G   + TGT V F    +IF    FN
Sbjct: 1   NALSSRVEVEIDVDGYHWSQTYKDSKP-GKL-VQGEPTSRTGTTVRFWADPEIFETTTFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  +                               
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSDTDITDDVVSEHAEAPKPGEAVDKPVEQKVKA 118

Query: 223 --MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y GG+E FV +++R K+ +  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVRHINRTKQSIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y       K+ + ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEGNLTGDDIREGLAAIVSVKIAEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 EKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 399


>gi|223717683|emb|CAX46421.1| gyrase B subunit [Vibrio natriegens]
          Length = 350

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 200/351 (56%), Positives = 270/351 (76%), Gaps = 3/351 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PSS+ F+  +F+YD 
Sbjct: 2   SEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSSETFTNTEFHYDI 60

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV +L+ +K P+++      
Sbjct: 61  LAKRLRELSFLNSGVSIKLSDER-EEDKHDHFMYEGGIQAFVQHLNTNKTPIIEKIFHFN 119

Query: 252 GSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
             R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   S
Sbjct: 120 FEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFS 179

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E
Sbjct: 180 KKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVE 239

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++V
Sbjct: 240 NPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIV 299

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           EGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 300 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|222873731|gb|EEF10862.1| predicted protein [Populus trichocarpa]
          Length = 361

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 208/360 (57%), Positives = 262/360 (72%), Gaps = 20/360 (5%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLA 262
           K   + RE      GG+  FV +++ +KK L  +     G+R            I +++A
Sbjct: 2   KDERDGREDDFSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVA 61

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD 
Sbjct: 62  MQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDM 121

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K+
Sbjct: 122 REGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPNDAKILCSKI 181

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           +DA+  R+AAR+AR++TRRKGVLD   LPGKLADC E+DP   E+++VEGDSAGGSAKQG
Sbjct: 182 VDAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQG 241

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDI 492
           R R+ QAILPLRGKILNVE+AR++K+L+S EI TLITALGTGIG+          D FD 
Sbjct: 242 RDRKFQAILPLRGKILNVEKARYEKLLTSNEIVTLITALGTGIGKATAESGKSGSDDFDP 301

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
           NKLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPLY +  GK   Y
Sbjct: 302 NKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEELY 361


>gi|318066887|emb|CBY89155.1| DNA gyrase subunit B [Kushneria avicenniae]
          Length = 349

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 199/352 (56%), Positives = 261/352 (74%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+  ++E  + +G+  +PL V G     +GT++ F PS++ F+ 
Sbjct: 1   VSVVNALSEQLKLTIWRKNQVHEQVYQHGVPQSPLAVVGDTE-RSGTQIHFKPSAETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+R  + RE    Y+GG+ AFV +L+ ++  + 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLLDER--DGREELFHYEGGLRAFVDHLNTNRTIIN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I++++AM+WND Y EN+ C+TNNIPQ+DGGTH++G R ALTR + SY+
Sbjct: 118 PVFHFNAEREDGIAVEVAMQWNDSYSENIFCYTNNIPQRDGGTHMAGFRGALTRSLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  ++  L
Sbjct: 178 EAEELQKKSKVTTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMSRQL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E+P EAK IV K+LDA+  RDAAR+AR++TRRKG LDIA LPGKLADC E+DP +
Sbjct: 238 SDYLLENPNEAKAIVNKMLDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPTR 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|318066897|emb|CBY89160.1| DNA gyrase subunit B [Salinicola salarius]
          Length = 349

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 200/352 (56%), Positives = 259/352 (73%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R   ++E  + +G+   PL V G     +GT+++F PSSD F+ 
Sbjct: 1   VSVVNALSEQLKLTIWRNNQVHEQIYHHGVPQAPLSVVGETE-KSGTQISFKPSSDTFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+R  + RE    Y+GG++AFV +L+ ++  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLVDER--DGREELFHYEGGLKAFVDHLNVNRTALN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I +++AM+WND + ENV C+TNNIPQ+DGGTH++G R+ALTR + SY+
Sbjct: 118 PVFHFEAQREDGIVVEVAMQWNDTFAENVFCYTNNIPQRDGGTHMAGFRAALTRTLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V+  ++   
Sbjct: 178 EAEDIQKKAKVATAGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVDQELSRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L EHP EAK IV K++DA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SDYLIEHPNEAKAIVNKMIDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|291535201|emb|CBL08313.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Roseburia intestinalis M50/1]
 gi|291539733|emb|CBL12844.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Roseburia intestinalis XB6B4]
          Length = 190

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/168 (50%), Positives = 108/168 (64%), Gaps = 7/168 (4%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
           +   YD  SI +L+GL+AV+KRP MYIG      GL+H+IYE++DNA+DE L G  D I 
Sbjct: 3   KTGGYDESSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGACDTIR 61

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125
           VTL  DGSCTV DNGRG+P  +H + G+SAA ++ T LHAGGKF+  +YK SGGLHGVG 
Sbjct: 62  VTLEADGSCTVEDNGRGVPVGMHAK-GVSAARIVYTTLHAGGKFDDSAYKTSGGLHGVGS 120

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGND 168
           SVVNALS+ + + I R+G I+   +  GI    L        G     
Sbjct: 121 SVVNALSTHMDVWISRDGYIHHDGYERGIPVVELENGLLPTIGKTKKP 168


>gi|318066853|emb|CBY89138.1| DNA gyrase subunit B [Halomonas hydrothermalis]
          Length = 349

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 194/352 (55%), Positives = 256/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I R+G ++E  + +G+   PL + G     +GT V F PS + F+ 
Sbjct: 1   VSVVNALSEELRLTIWRQGEVFEQVYQHGVPQAPLGIVGKTE-KSGTRVHFRPSPNTFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+++K  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFVDHLNKNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+W++ + EN+ C+TNNIPQ+DGGTHL+G R+ALTR +  Y+
Sbjct: 118 PVFHFNALREDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGTHLAGFRAALTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAQGLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           + +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP +
Sbjct: 238 ADYLIEKPNEAKSIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSQ 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|217031310|gb|ACJ74211.1| gyrase b [Enterobacter cloacae]
          Length = 336

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 193/339 (56%), Positives = 253/339 (74%), Gaps = 4/339 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L+L I+REG I+   + +G+   PL VTG   + TGT V F PS + F+
Sbjct: 1   GVSVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDT-DKTGTMVRFWPSLETFT 59

Query: 184 V-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P
Sbjct: 60  NVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAFVEYLNKNKTP 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +
Sbjct: 118 IHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+
Sbjct: 178 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 237

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP
Sbjct: 238 LLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDP 297

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
             SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKIL + 
Sbjct: 298 ALSELYLVEGDSAGGSAKQGRTRKNQAILPLKGKILTLR 336


>gi|62461700|gb|AAX83008.1| GyrB [Vibrio campbellii]
          Length = 306

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 158/308 (51%), Positives = 221/308 (71%), Gaps = 3/308 (0%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGGKF+  SYK SGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G 
Sbjct: 1   AGGKFDDNSYKXSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGD 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
               TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       
Sbjct: 61  TE-KTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFM 118

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           ++GGI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+
Sbjct: 119 FEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQR 178

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQT
Sbjct: 179 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KLVSSEV+S VES + + LS +L E+P EAK++  K+++ +   + AR+A ++TR KG
Sbjct: 239 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIINPTRAPETARKALEMTRPKG 298

Query: 404 VLDIASLP 411
            LD+A LP
Sbjct: 299 ALDLAGLP 306


>gi|148762471|dbj|BAF63937.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 327

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 147/328 (44%), Positives = 221/328 (67%), Gaps = 2/328 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVG SVVNALS+ L + + R+G ++   F  G+    L V G       T  
Sbjct: 1   YKVSGGLHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGETEVTGTTTH 60

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI+++
Sbjct: 61  -FKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKRDGKERKNEYCYEGGIKSY 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+R +  + + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH +G 
Sbjct: 120 VEHLNRSRGVVHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGF 179

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  ++   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 180 KTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 239

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++LPG
Sbjct: 240 RTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPG 299

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +DP  SEL++VEGDSAGGSAK
Sbjct: 300 KLADCSSKDPTISELYIVEGDSAGGSAK 327


>gi|108946648|gb|ABG23672.1| gyrase subunit B [Leptospira kirschneri]
 gi|108946652|gb|ABG23674.1| gyrase subunit B [Leptospira kirschneri]
 gi|108946654|gb|ABG23675.1| gyrase subunit B [Leptospira kirschneri]
          Length = 138

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/139 (53%), Positives = 102/139 (73%), Gaps = 1/139 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I + +  +    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKINILPNNIVEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGIL 155
           + + ++G +Y   +  G+ 
Sbjct: 120 VEVHQKGKVYTQKYEKGVP 138


>gi|323146978|gb|ADX32782.1| DNA gyrase B subunit [endophytic bacterium 8(2011)]
          Length = 234

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/237 (43%), Positives = 151/237 (63%), Gaps = 19/237 (8%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVI 99
           +++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE++
Sbjct: 1   LVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIV 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---- 155
           MT LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+     
Sbjct: 61  MTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRV 120

Query: 156 --------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
                    +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+
Sbjct: 121 IEEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVR 179

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
           I L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM+
Sbjct: 180 IRLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQ 234


>gi|311788330|gb|ADQ12752.1| GyrB [Micromonospora eburnea]
          Length = 371

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 166/373 (44%), Positives = 240/373 (64%), Gaps = 8/373 (2%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVS  NALS+ + + I ++G ++   + N     PL   G   + TG+ V+F 
Sbjct: 1   SGGLHGVGVSDENALSTKMAVEIHKDGFVWRQQYHNSKP-TPLEK-GEPTDRTGSAVSFW 58

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEA 231
           P  D+F   DF++ T+  RL+E++FL   + I L+D+R       +PRE+T  Y+GGI  
Sbjct: 59  PDPDVFETVDFDFQTIYRRLQEMAFLTRGLTIHLLDERAPEGEEGKPREVTFHYEGGIAD 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV +L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G
Sbjct: 119 FVRHLNASKNPIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ 
Sbjct: 179 FRAALTSVVNRYGADKK-LLKGDERLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTP 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+S V+   N+ L  W + +P EAKII+ K   A+  R AA++AR L RRK +L+  S+P
Sbjct: 238 VKSFVQRVCNESLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMP 297

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L +
Sbjct: 298 GKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKN 357

Query: 472 QEIGTLITALGTG 484
            E+  LITALGTG
Sbjct: 358 NEVQALITALGTG 370


>gi|284793877|pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed
           With Inhibitor
 gi|284793878|pdb|3FV5|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed
           With Inhibitor
          Length = 201

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/205 (41%), Positives = 127/205 (61%), Gaps = 5/205 (2%)

Query: 20  GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDN 79
           GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V L+ D S  V D+
Sbjct: 1   GLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDD 56

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+SVVNALS  +++ +
Sbjct: 57  GRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV 116

Query: 140 KREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRE 198
           +R+G +Y ++F NG     L V G+    +TGT V F P    F    F+   L H L+ 
Sbjct: 117 RRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKA 176

Query: 199 LSFLNSSVQISLIDKRSPEPREITM 223
            + L   V+I+  D+ +   +    
Sbjct: 177 KAVLCPGVEITFKDEINNTEQRWCY 201


>gi|220680516|dbj|BAH10747.1| DNA gyrase subunit B [Nocardia carnea]
          Length = 400

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 167/403 (41%), Positives = 238/403 (59%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  +  +G  +  ++ + +   PL V G     TGT + F     IF    +N
Sbjct: 1   NALSSRLEAEVDTDGYHWSQTYKDAVP-GPL-VQGEPTKATGTTIRFWADPAIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I L D+R                               + +
Sbjct: 59  FETISRRLQEMAFLNKGLTIVLTDERVSATEVTDEMVSETAEAPKHDEGGEKPAVEHKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 ARTYHYPGGLEDFVRHINRTKQPIHNSAVSFNGKGPGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K    ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLTGDDIREGLAAIVSVKVSEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNKAVSSAQARLAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR DK+L + E+  +ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 VEKARIDKVLKNAEVQAIITAFGTGI-HDEFDIAKLRYHKIVL 400


>gi|261331231|emb|CBH14221.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1221

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 132/660 (20%), Positives = 233/660 (35%), Gaps = 55/660 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEVL 49
           A   + L  ++ V  RP MYIG  D                         GL  ++ E+L
Sbjct: 4   AHKYKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEIL 63

Query: 50  DNAIDES--LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D           I VT+   G  T+ ++G GIP    +E  +   E++   L    
Sbjct: 64  LNASDNISNRSARMTYIRVTITDTGEITIENDGAGIPIVRSREHKLYIPEMVFGHLLTSS 123

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--A 165
            ++  +     G HG G  + N LS    +  +  G  + MS+ + +         +   
Sbjct: 124 NYDDDNQNAVAGRHGYGAKLTNILSLSFSVCCRTNGREFHMSWQDHMRKATAPRVSNVGT 183

Query: 166 GNDTGTEVTFLPSSDIFSV-----QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                T V FLP  + F +      +     L  R+ +LS +  ++QI+L          
Sbjct: 184 KEKNVTRVKFLPDYERFGMKEKKISNDMKRVLYKRIMDLSAMFPNIQITLNGSSFGFKSF 243

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                       +      K      P   +     ++   ++         +    N +
Sbjct: 244 KDYAT-------LYSAMTPKGEKPPPPYVYESKSGCVAFIPSVVPG---VRRMFGVVNGV 293

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +  +  LT  +     +    K++K        R  FT ++ +    P+F 
Sbjct: 294 VTYNGGTHCNAAQDILTGCL--DGVERELKKENKVMDTNRVLR-HFTILVFLVQVQPKFD 350

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQ K +LVS+     V       +  +L   P     +       +   +          
Sbjct: 351 SQNKARLVSTPTMPRV---PRQDVMKYLLRMPFLEAHVSTITGQLAQELNKEIGTGRRMS 407

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLRGKI 457
            K +L   +                 L + EGDSA   A+       +    + PLRGK+
Sbjct: 408 SKTLLTSITKLVDATSTRRDPKHTRTLIVTEGDSAKALAQNSLSSDQKRYTGVFPLRGKL 467

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNV      ++ + +E+  L  ALG  + +D  D ++LRY +I+IMTD D DG+HI+ L+
Sbjct: 468 LNVRNKNLKRLRNCKELQELFCALGLELDKDYTDADELRYQRILIMTDQDADGSHIKGLV 527

Query: 518 LTFFFRQMPSLIHN--GFLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           +  F    PSL+    GF+ I   P+     R KS+      +    +  + + +     
Sbjct: 528 INAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFFSMKEFHKWQRSNANTPYTCK 587

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  +  + + +  D  K    ++      D   ++    S       D     + 
Sbjct: 588 YYKGLGTSTTAEGKEYFKDMEK--HTMRLLVDRSDHKLLDNVFDSQEVEWRKDWMTKANA 645


>gi|207107904|dbj|BAG71964.1| DNA gyrase subunit B [Gordonia jacobaea]
          Length = 407

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 175/410 (42%), Positives = 242/410 (59%), Gaps = 34/410 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I   G  +E ++       PL V G+A   TGT V F    +IF 
Sbjct: 1   GISVVNALSTQVELEINYGGYHWEQTYNYAKP-GPL-VQGAATRKTGTTVRFWADPEIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------------------------- 216
              ++ +T+  RL+E++FLN  + I+L D+R                             
Sbjct: 59  TTTYSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDEDTAEKPKTAEEEAVA 118

Query: 217 ----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               +PR  T  Y  G+  ++ +L+R K P+ QS I          +++AM+WN GY E+
Sbjct: 119 PTVTKPRTRTYHYPDGLIDYIKHLNRTKTPIHQSVIGFTAKGTGHEVEIAMQWNSGYSES 178

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S+
Sbjct: 179 VHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLSGDDIREGLAAVISV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P EAKIIVKK +D++  R AA
Sbjct: 239 KVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLGHWFEANPAEAKIIVKKAVDSAQARLAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAILP
Sbjct: 299 RKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++
Sbjct: 359 IRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHKIVL 407


>gi|194676107|ref|XP_001254458.2| PREDICTED: DNA topoisomerase II, alpha isozyme [Bos taurus]
 gi|297487046|ref|XP_002696055.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Bos taurus]
 gi|296476435|gb|DAA18550.1| topoisomerase (DNA) II alpha 170kDa [Bos taurus]
          Length = 1338

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 118/588 (20%), Positives = 232/588 (39%), Gaps = 39/588 (6%)

Query: 68  LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           L  +   ++ +NG+GIP   HK E +    +I  +L     ++ +  KV+GG +G G  +
Sbjct: 75  LRENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDEEKKVTGGRNGYGAKL 134

Query: 128 VNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
            N  S+   +    RE   +++ ++++ +     +       +  T +TF P    F +Q
Sbjct: 135 CNIFSTKFTVETASREYKKMFKQTWMDNMGKAGEMELKPFSGEDYTCITFHPDLSKFKMQ 194

Query: 186 DFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
             + D    +  R  +++     V++ L   R             G  ++V    + K  
Sbjct: 195 SLDKDIVALMVRRAYDIAGSTKDVKVYLNGNR---------LPVKGFRSYVDLYLKDKVD 245

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
              +P+++   + N   ++ +  ++   + +  F N+I    GG H+  +   +  ++  
Sbjct: 246 ETGNPLKVIHEQVNHRWEVCLTMSEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVD 304

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
            V+K     K   +V     +      ++  + +P F SQTKE +            +++
Sbjct: 305 VVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGSTCQLSE 361

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
                        + I+  V   + ++      +    +   +          D   R+ 
Sbjct: 362 KFIKAAI-GCGIVESILNWVKFKAQIQL---NKKCSAVKHNRIKGIPKLDDANDAGGRNS 417

Query: 423 KKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
            +  L L EGDSA      G    GR +    + PLRGKILNV  A   +++ + EI  +
Sbjct: 418 TECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIMENAEINNI 475

Query: 478 ITALGTGIGQDSFDINK---LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534
           I  +G    ++  D +    LRY KI+IMTD D DG+HI+ LL+ F     PSL+ + FL
Sbjct: 476 IKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFL 535

Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDD 593
                P+  +++ K           E++  +     +    +    G  +  + + +  D
Sbjct: 536 EEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFAD 595

Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
             +     K   P       + A IS  F+ +   +    L   + +R
Sbjct: 596 MKRHRIQFKYSGPE------DDAAISLAFSKKQTDDRKEWLTHFMEDR 637


>gi|207107916|dbj|BAG71970.1| DNA gyrase subunit B [Gordonia rhizosphera]
          Length = 408

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 175/411 (42%), Positives = 238/411 (57%), Gaps = 35/411 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I   G  +E S+ +    +PL   G+A   TGT V F P  DIF 
Sbjct: 1   GISVVNALSTKVELEINYGGFHWEQSYDHAKP-SPLQQ-GAATRKTGTTVRFWPDPDIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP------------------------- 218
              F+ +T+  RL+E++FLN  + I+L D R  E                          
Sbjct: 59  TTTFSAETVARRLQEMAFLNKGLTITLTDNRRSEESVAAEAEMGGNGEETAEVIKSEEEK 118

Query: 219 -------REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
                  R  T  Y  G+  ++ +L+R K  +  S I          +++AM+WN GY E
Sbjct: 119 AQRAARVRTRTYHYPDGLVDYIKHLNRTKNSIHTSVIAFNAKGTGHEVEIAMQWNAGYSE 178

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S
Sbjct: 179 SVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLAAVIS 238

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ DP+F  QTK KL ++EV+  V+   N+ L  W E +P EAK IVKK +D++  R A
Sbjct: 239 VKVSDPQFEGQTKTKLGNTEVKGFVQKMSNEHLGHWFEANPAEAKTIVKKAVDSAQARMA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAIL
Sbjct: 299 ARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           P+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 PIRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 408


>gi|110084494|gb|ABG49404.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 323

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 184/325 (56%), Positives = 241/325 (74%), Gaps = 2/325 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G + + TGTEV F PS  IFS   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTLYHYEILAKRL 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D 
Sbjct: 61  RELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +  Y++K   SKK K +
Sbjct: 119 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNHYMDKEDYSKKAKSA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 179 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAEFLLENPGDAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AA +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 239 IVVNKIIDAARAREAACKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 298

Query: 437 GSAKQGRSRENQAILPLRGKILNVE 461
           GSAKQGR+R+NQAILPL+GKILNVE
Sbjct: 299 GSAKQGRNRKNQAILPLKGKILNVE 323


>gi|218672910|ref|ZP_03522579.1| DNA gyrase subunit B [Rhizobium etli GR56]
          Length = 211

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/211 (49%), Positives = 150/211 (71%), Gaps = 4/211 (1%)

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWH 654
           +  L+ + +  +++  IEQA I+G  N E  SD+    +LAS++A+RL+ IAE++E+ W 
Sbjct: 1   MRALLDNLHSRYNRAAIEQAAIAGALNAELVSDRARAQALASEVASRLDIIAEETERGWQ 60

Query: 655 GSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713
           G +  +  + ++R+ RGV+E  VL+ + I S  +++    ++R++E Y T  SL      
Sbjct: 61  GDLTSDGGLRLERMVRGVKEIVVLDMALIGSSDARHIDQLTSRLKEIYQTPPSLHRREGD 120

Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           I+I+GP +LLD IF+ GRKG+SMQRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ A
Sbjct: 121 IEISGPRALLDAIFASGRKGLSMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVADATDA 180

Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           D LF+RLMGDEVEPRREFIQ+N+L    LDI
Sbjct: 181 DGLFARLMGDEVEPRREFIQDNALSVANLDI 211


>gi|108946650|gb|ABG23673.1| gyrase subunit B [Leptospira kirschneri]
          Length = 137

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/138 (54%), Positives = 103/138 (74%), Gaps = 1/138 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGI 154
           + + ++G +Y   +  G+
Sbjct: 120 VEVHQKGKVYTQKYEKGV 137


>gi|71744648|ref|XP_803868.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70831119|gb|EAN76624.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 132/660 (20%), Positives = 233/660 (35%), Gaps = 55/660 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEVL 49
           A   + L  ++ V  RP MYIG  D                         GL  ++ E+L
Sbjct: 4   AHKYKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEIL 63

Query: 50  DNAIDES--LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D           I VT+   G  T+ ++G GIP    +E  +   E++   L    
Sbjct: 64  LNASDNISNRSARMTYIRVTITDTGEITIENDGAGIPIVRSREHKLYIPEMVFGHLLTSS 123

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--A 165
            ++  +     G HG G  + N LS    +  +  G  + MS+ + +         +   
Sbjct: 124 NYDDDNQNAVAGRHGYGAKLTNILSLSFSVCCRTNGREFHMSWQDHMRKATAPRVSNVGT 183

Query: 166 GNDTGTEVTFLPSSDIFSV-----QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                T V FLP  + F +      +     L  R+ +LS +  ++QI+L          
Sbjct: 184 KEKNVTRVKFLPDYERFGMKEKKISNDMKRVLYKRIMDLSAMFPNIQITLNGSSFGFKSF 243

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                       +      K      P   +     ++   ++         +    N +
Sbjct: 244 KDYAT-------LYSAMTPKGEKPPPPYVYESKSGCVAFIPSVVPG---VRRMFGVVNGV 293

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +  +  LT  +     +    K++K        R  FT ++ +    P+F 
Sbjct: 294 VTYNGGTHCNAAQDILTGCL--DGVERELKKENKVMDTNRVLR-HFTILVFLVQVQPKFD 350

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQ K +LVS+     V       +  +L   P     +       +   +          
Sbjct: 351 SQNKARLVSTPTMPRV---PRQDVMKYLLRMPFLEAHVSTITGQLAQELNKEIGTGRRMS 407

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLRGKI 457
            K +L   +                 L + EGDSA   A+       +    + PLRGK+
Sbjct: 408 SKTLLTSITKLVDATSTRRDPKHTRTLIVTEGDSAKALAQNSLSSDQKRYTGVFPLRGKL 467

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNV      ++ + +E+  L  ALG  + +D  D ++LRY +I+IMTD D DG+HI+ L+
Sbjct: 468 LNVRNKNLKRLRNCKELQELFCALGLELDKDYTDADELRYQRILIMTDQDADGSHIKGLV 527

Query: 518 LTFFFRQMPSLIHN--GFLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           +  F    PSL+    GF+ I   P+     R KS+      +    +  + + +     
Sbjct: 528 INAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFFSMKEFHKWQRSNANTPYTCK 587

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  +  + + +  D  K    ++      D   ++    S       D     + 
Sbjct: 588 YYKGLGTSTTAEGKEYFKDMEK--HTMRLLVDRSDHKLLDNVFDSQEVEWRKDWMTKANA 645


>gi|220680594|dbj|BAH10786.1| DNA gyrase subunit B [Rhodococcus koreensis]
          Length = 403

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 168/406 (41%), Positives = 239/406 (58%), Gaps = 35/406 (8%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L + IKR+G  +  ++ +      L V G A  +TGT VTF    +IF    ++
Sbjct: 1   NALSTRLDVDIKRDGFRWNQTYTDSKP-GEL-VKGEATKETGTTVTFWADPNIFETTVYS 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRS--------------------------------P 216
           ++T+  RL+E++FLN  + I+L D+R                                  
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKSAEDEHAEADAPAVH 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           + +     Y GG+E +V +++R K+P+  S +          +++AM+WN GY E+V  F
Sbjct: 119 KVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHELEIAMQWNSGYSESVHTF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G RSALT  +  Y       K+    + GDD REG  +++S+K+ +
Sbjct: 179 ANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIREGLAAIISVKVGE 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL ++EVRS V+   N+ LS W E +P +AK IV K + ++  R AAR+AR
Sbjct: 239 PQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAVSSAQARVAARKAR 298

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           +L RRK   D+  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAILPLRGK
Sbjct: 299 ELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 358

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           I+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 IINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 403


>gi|220680564|dbj|BAH10771.1| DNA gyrase subunit B [Nocardia shimofusensis]
          Length = 399

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 165/402 (41%), Positives = 240/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS +++ I  +G  +  ++ +      L V G     TGT V F    +IF    FN
Sbjct: 1   NALSSRVEVEIDVDGYHWSQTYKDSKP-GKL-VQGEPTGRTGTTVRFWADPEIFETTTFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I+L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSDTDITDEVVSETAEAPKPGESAEKPVEHKVKA 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+ +  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVRHINRTKQSIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y       K+ + ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEGNLTGDDIREGLAAIVSVKIAEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARMAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 EKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 399


>gi|190148872|gb|ACE63411.1| DNA gyrase B subunit [Pseudonocardia sp. S010]
          Length = 365

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 158/366 (43%), Positives = 224/366 (61%), Gaps = 17/366 (4%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS+ L + I  +G ++   +   +   PL   G     TG+ VT+
Sbjct: 2   VSGGLHGVGVSVVNALSTALDVEIHTDGFVWRQHYARSVP-GPLRK-GEPTKKTGSTVTY 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---------------RE 220
               DIF    +N +T++ RL+E++FLN  + I+L D+R+ +                +E
Sbjct: 60  WADGDIFETLTYNIETIRRRLQEMAFLNKGLTITLRDERNGDNGEAEEPDAEGYVAKVKE 119

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y  G+E FV++L++ K P+ +  +   G      +++AM+WN GY E+V  F N I
Sbjct: 120 YTFCYPNGLEDFVAHLNKSKDPIHKKLVSFTGEGTGHQVEVAMQWNSGYTESVYTFANTI 179

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G RSALT  +  Y       K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 180 NTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKEPQFE 239

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P EA+ IV K + ++  R AAR+AR+L R
Sbjct: 240 GQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEARTIVNKAVQSAQARAAARKARELVR 299

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI+NV
Sbjct: 300 RKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKIINV 359

Query: 461 ERARFD 466
           E+AR D
Sbjct: 360 EKARID 365


>gi|135998|sp|P12531|TOP2_TRYBB RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|162305|gb|AAA30256.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 132/660 (20%), Positives = 233/660 (35%), Gaps = 55/660 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEVL 49
           A   + L  ++ V  RP MYIG  D                         GL  ++ E+L
Sbjct: 4   AHKYKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEIL 63

Query: 50  DNAIDES--LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107
            NA D           I VT+   G  T+ ++G GIP    +E  +   E++   L    
Sbjct: 64  LNASDNISNRSARMTYIRVTITDTGEITIENDGAGIPIVRSREHKLYIPEMVFGHLLTSS 123

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--A 165
            ++  +     G HG G  + N LS    +  +  G  + MS+ + +         +   
Sbjct: 124 NYDDDNQNAVAGRHGYGAKLTNILSLSFSVCCRTNGREFHMSWQDHMRKATAPRVSNVGT 183

Query: 166 GNDTGTEVTFLPSSDIFSV-----QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
                T V FLP  + F +      +     L  R+ +LS +  ++QI+L          
Sbjct: 184 KEKNVTRVKFLPDYERFGMKEKKISNDMKRVLYKRIMDLSAMFPNIQITLNGSSFGFKSF 243

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
                       +      K      P   +     ++   ++         +    N +
Sbjct: 244 KDYAT-------LYSAMTPKGEKPPPPYVYESKSGCVAFIPSVVPG---VRRMFGVVNGV 293

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH +  +  LT  +     +    K++K        R  FT ++ +    P+F 
Sbjct: 294 VTYNGGTHCNAAQDILTGCL--DGVERELKKENKVMDTNRVLR-HFTILVFLVQVQPKFD 350

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQ K +LVS+     V       +  +L   P     +       +   +          
Sbjct: 351 SQNKARLVSTPTMPRV---PRQDVMKYLLRMPFLEAHVSTITGQLAQELNKEIGTGRRMS 407

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLRGKI 457
            K +L   +                 L + EGDSA   A+       +    + PLRGK+
Sbjct: 408 SKTLLTSITKLVDATSTRRDPKHTRTLIVTEGDSAKALAQNSLSSDQKRYTGVFPLRGKL 467

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNV      ++ + +E+  L  ALG  + +D  D ++LRY +I+IMTD D DG+HI+ L+
Sbjct: 468 LNVRNKNLKRLRNCKELQELFCALGLELDKDYTDADELRYQRILIMTDQDADGSHIKGLV 527

Query: 518 LTFFFRQMPSLIHN--GFLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIEL 574
           +  F    PSL+    GF+ I   P+     R KS+      +    +  + + +     
Sbjct: 528 INAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFFSMKEFHKWQRSNANTPYTCK 587

Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
           +    G  +  + + +  D  K    ++      D   ++    S       D     + 
Sbjct: 588 YYKGLGTSTTAEGKEYFKDMEK--HTMRLLVDRSDHKLLDNVFDSQEVEWRKDWMTKANA 645


>gi|220680183|dbj|BAH10710.1| DNA gyrase subunit B [Nocardia abscessus]
          Length = 399

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 166/402 (41%), Positives = 238/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I R+G  +  ++ +      L V G     TGT + F    +IF    +N
Sbjct: 1   NALSSRLEAEIDRDGYHWSQTYKDSTP-GKL-VQGEPTKKTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAEAPKHADESAAPAEHKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+ +  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVRHINRTKQAIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 EKARIDKVLKNNEVQSIITAFGTGI-HDEFDIGKLRYHKIVL 399


>gi|165968990|gb|ABY76051.1| topoisomerase IV subunit ParE [Parachlamydia sp. TUMPL1]
          Length = 494

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 153/533 (28%), Positives = 239/533 (44%), Gaps = 50/533 (9%)

Query: 76  VSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLHGVGVSVVNALSS 133
           V D GRGIP             VI     ++ G K+N   ++ S GL+GVG   VNALSS
Sbjct: 1   VRDFGRGIPLGK----------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVNALSS 50

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
              +R  REG   E  F  G L      +       GT V F+P  +IF    F  + +Q
Sbjct: 51  HFLVRSHREGKSMEAVFSQGKLI--REKSQKTSEPDGTYVEFIPDKEIFKKYRFEPEYIQ 108

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RL   ++LN+ + +    +          + + G+   ++      +  +  P+  +G 
Sbjct: 109 KRLWHYAYLNTGLILEYNGQDI--------YSENGLLDLLNEEVT--EDRLYEPLYYRGK 158

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                ++ A      Y E+   F N     DGGTHLS  R  + + +  Y +K+      
Sbjct: 159 ----LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVNEYSKKN------ 208

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
                G D REG    +++++ DP F SQTK KL ++E+R  +   V D +   L ++  
Sbjct: 209 ---FQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDAVVNMLYKNSS 265

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP------KKSEL 427
            A  I+++++           A     ++    I+    K  DC           +K+ +
Sbjct: 266 TANSIIERIVFNEK-LRKELAAVKKEAKEKQKKISFKIPKXRDCKYHAQDKADVGEKTMI 324

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FL EGDSA  S    R    QA+  LRGK LNV   + D++  ++E+  L++AL      
Sbjct: 325 FLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNI---- 380

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
              DI  LRY K+I+ TDADVDG HIR LL+TFF      L+ NG L+I++ PL+ +   
Sbjct: 381 -EDDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVRNR 439

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
           +   Y   EE  +  +       E+  F    G IS N+ + FI   +++  +
Sbjct: 440 EKTLYCYSEEERDKAIKQLKKGIEVTRF-KGLGEISPNEFKQFIGKDIRLIPV 491



 Score = 40.8 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 2/135 (1%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +  + QAV S      +   + +    K     N ++  + +    ++    +++     
Sbjct: 340 RDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNIEDDIENLRYQKVILA-TDA 398

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
            V    +      F        + +  +      +  +      +         D     
Sbjct: 399 DVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVRNREKTLYCYSEEER-DKAIKQ 457

Query: 730 GRKGISMQRYKGLGE 744
            +KGI + R+KGLGE
Sbjct: 458 LKKGIEVTRFKGLGE 472


>gi|148762373|dbj|BAF63888.1| DNA gyrase subunit B [Halobacillus profundi]
          Length = 325

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 148/328 (45%), Positives = 221/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALSS L++ +   G I+  ++  G+ +  + V G   + TGT +
Sbjct: 1   YKVCGGLHGVGASVVNALSSKLEVFVHLNGKIHYQAYHRGVPEEDVKVIGET-DQTGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IF     + ++ L +RLREL+FLN  + I++ DKR+ E   +  +++GGI ++
Sbjct: 60  HFKPDEEIFRETQEYKFEILANRLRELAFLNKGLTITIEDKRTDEDP-VNYYFEGGILSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ L      I+  +D+ISI++AM++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTREALH-EAFFIEDEQDDISIEIAMQYNDGFASNLYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++S+K PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISVKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V ++  ++G S +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDALFSEGFSKFLFENPNMAKTIVEKGLMASRARMAAKKARELTRRKNALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|62085670|gb|AAX63227.1| DNA gyrase subunit B [Gordonia alkanivorans]
          Length = 409

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 169/405 (41%), Positives = 236/405 (58%), Gaps = 37/405 (9%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A   TGT V F
Sbjct: 2   VSGGLHGVGISVVNALSTKVELEIARDGHNWTQTYSYAKP-GALEQ-GDATRKTGTTVRF 59

Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------------ 216
            P  DIF+    FN +T+  RL+E++FLN  + I+L D+R                    
Sbjct: 60  WPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDEDAPTTD 119

Query: 217 ----------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
                           +P+  T  Y  G+  ++ +L+R K+ +  + I      +   ++
Sbjct: 120 VAEVVLSETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGHEVE 179

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + GD
Sbjct: 180 IAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGD 239

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAKII+K
Sbjct: 240 DIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIK 299

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK
Sbjct: 300 KAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAK 359

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
            GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI
Sbjct: 360 SGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI 404


>gi|215271438|emb|CAR48208.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 350

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 201/352 (57%), Positives = 271/352 (76%), Gaps = 3/352 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  + L I R G+I+  ++ +G  + PL V G   + TGT++ F PS++ FS  +F+YD
Sbjct: 1   LSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFSNTEFHYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV +L+ +K P+++     
Sbjct: 60  ILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQHLNTNKTPIIEKIFHF 118

Query: 251 QGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
              R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   
Sbjct: 119 DLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGF 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L 
Sbjct: 179 SKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLV 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP   EL++
Sbjct: 239 ENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALFELYI 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL
Sbjct: 299 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|106895916|gb|ABE96853.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 342

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 197/344 (57%), Positives = 256/344 (74%), Gaps = 2/344 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRL 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R          Y+GGI+AFV YL+++K P+          +D 
Sbjct: 61  RELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 119 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AK
Sbjct: 179 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 239 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 298

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 342


>gi|106895920|gb|ABE96855.1| DNA gyrase subunit B [Aeromonas sp. MDC69]
          Length = 342

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 197/344 (57%), Positives = 255/344 (74%), Gaps = 2/344 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRL 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R          Y+GGI+AFV YL+++K P+          +D 
Sbjct: 61  RELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 119 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AK
Sbjct: 179 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 239 IVVNKIIDAARAREAARTARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 298

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA
Sbjct: 299 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 342


>gi|220680542|dbj|BAH10760.1| DNA gyrase subunit B [Nocardia neocaledoniensis]
          Length = 400

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 161/403 (39%), Positives = 236/403 (58%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I  +G  +  ++ +      L + G     TGT + F    +IF    +N
Sbjct: 1   NALSSKLEAEIDTDGYHWAQTYKDAKP-GKL-IQGEPTKRTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  E   I                           
Sbjct: 59  FETVSRRLQEMAFLNKGLTITLTDQRVTESDVIDEVVSDTAEAPKHAEEGADKPVEHKVK 118

Query: 223 ---MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y GG+  FV +++R K+ +  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYRYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++     +   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNKYAKEKKLLTEKDGNLTGDDIREGLAAIVSVKVGEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR D++L + E+ ++ITA GTGI  D FDI KLRY+KII+
Sbjct: 359 VEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYNKIIL 400


>gi|331028975|gb|AAM54162.3|L07144_1 Hypothetical protein R05D3.12a [Caenorhabditis elegans]
          Length = 1170

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 132/689 (19%), Positives = 243/689 (35%), Gaps = 67/689 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT-----------DGES------------GLHHMIYEV 48
           A   +     + V  RP  YIG             D E+            GL  +  E+
Sbjct: 44  AAKYEKKSPTEHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEI 103

Query: 49  LDNAIDE-SLEGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D  + +   + + V L+ + +  +V +NG G+P ++H  EGI    ++   L   
Sbjct: 104 LVNAADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTS 163

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILD---NPLVV 161
             ++    K  GG +G G  + N  S    +     R    +   + + +       +V 
Sbjct: 164 SNYDDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVE 223

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSV-QISLIDKRSPE 217
                    T+V F+P  + F +   + D +     R+ E++        + L  ++   
Sbjct: 224 ILDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDV 283

Query: 218 PREITMFYKGGIEAFV--SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
                        + +   +        +       G    +               ++ 
Sbjct: 284 DGFEDYVKMFNDSSSLLFLHPTPRWHVGVAKRNNFFGESHVV------------LPKIVS 331

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI  + GG+H+  +   +   I   V+         +SV     +   +  ++  + 
Sbjct: 332 FVNNINTEKGGSHVDYVMDKIVNIIKPIVDSK--LGDPTKSVKPAVIKNNLSIFINCLIE 389

Query: 336 DPRFSSQTKEKLVSS-EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           +P F SQTKE L +  +    +        + W E+  L   I+ + +          R 
Sbjct: 390 NPSFESQTKETLTTKAKNFGSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKRV 449

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAIL 451
           +    R    L+ A   G          +K  L L EGDSA   A  G     RE   + 
Sbjct: 450 SVSSVRDIVKLEDAEWAG-----ITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVF 504

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF-DINKLRYHKIIIMTDADVDG 510
           PL+GK+LNV      +   ++EI  L+  LG      +      LRY +++I+ D D DG
Sbjct: 505 PLKGKLLNVSNLDDARASKNEEISNLLRILGLKFEDSNSITRESLRYGRLLILADQDEDG 564

Query: 511 AHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           +HI+ L++ F  +  PSL+H +GF+   + PL    +G  ++          +   +   
Sbjct: 565 SHIKGLIVNFIHKFWPSLVHTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWADVEEGG 624

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
           +    +    G  + N+ R +  D        K           +   I   F+ +   E
Sbjct: 625 KWKIKYYKGLGTSTSNEAREYFSDLDHHTVNFK------YTGTTDDDAIRMAFDRDKSDE 678

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSIN 658
               +        N    K+E S+   ++
Sbjct: 679 RKEWIRRSENEITNEDDGKTEISYQEFVD 707


>gi|93277218|gb|ABF06427.1| gyrase B [Streptomyces sp. M46]
          Length = 394

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 177/396 (44%), Positives = 246/396 (62%), Gaps = 23/396 (5%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS+ + + I  +G+ +  S+  G+   PL   G A  +TGT VTF     IF  
Sbjct: 1   ISVVNALSNRVAVEILTDGHHWTQSYERGVPTAPLAR-GEATEETGTSVTFWADPSIFET 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------SPEPREITMFYK 226
            D++++TL  R +E++FLN  + I L D+R                    EPR +T  Y+
Sbjct: 60  TDYSFETLSRRFQEMAFLNKGLTIKLTDERASAKATAGADSDEATAGEPEEPRTVTYHYE 119

Query: 227 GGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQK 283
           GGI  FV+Y   R  + +  + I I+    +  +SI++AM+WN GY E V  F N I   
Sbjct: 120 GGIVDFVTYLNSRKGEVIHPTVIDIEAEDKDRLLSIEVAMQWNGGYSEGVYSFANTIHTH 179

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           +GGTH  G R ALT  +  Y       +    ++ GDD REG T+++S+K+ +P+F  QT
Sbjct: 180 EGGTHEEGFRGALTTLVNKYARDRKLLRDKDDNLTGDDIREGLTAIISVKLGEPQFEGQT 239

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K KL ++E ++ V+  V + L+ W + +P EA  I++K + A+  R AAR+ARDLTRRKG
Sbjct: 240 KTKLGNTEAKTFVQKVVYEHLADWFDRNPNEAADIIRKGIAAATARVAARKARDLTRRKG 299

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           +L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR    QAILP+RGKILNVE+A
Sbjct: 300 LLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILNVEKA 359

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           R DK+L +QEI  LI+A GTG+ +D FDI KLRYHK
Sbjct: 360 RIDKILHNQEIQALISAFGTGVHED-FDIEKLRYHK 394


>gi|195926958|dbj|BAG68366.1| gyrase B [Campylobacter concisus]
          Length = 339

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 161/344 (46%), Positives = 230/344 (66%), Gaps = 5/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L + IKR+G ++   F  GI  + L V     N TGT+V F P   IF V +
Sbjct: 1   VVNALSKKLVVNIKRDGKLHRQEFAKGIPQSDLEVI-KTTNRTGTQVEFWPDDSIFEVTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ + L  R REL++LN  + I+  D+R+   R  +  ++GG+E+FV+ +  +K   +  
Sbjct: 60  FDDEILVKRFRELAYLNPKITINFKDQRNG--RSESFHFEGGLESFVTDM--NKANAVSK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  D++ +D A+ +ND Y EN+L F NNI   DGGTH +G R+ LTR IT+YV+ 
Sbjct: 116 AVSFSGGEDDVMVDFALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYVQA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL SS V+ +V+  V D L+ 
Sbjct: 176 NAAAREKDTKITGEDIREGLIAVVSVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFDVLTK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EA+ I+ K L A+  R+AA++ARDLTR+K  + + +LPGKLADC  +DP  SE
Sbjct: 236 YFEENPIEARAIMDKALMAARGREAAKKARDLTRKKESMSVGTLPGKLADCQSKDPVISE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           L+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+AR DK+L 
Sbjct: 296 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILK 339


>gi|106895922|gb|ABE96856.1| DNA gyrase subunit B [Aeromonas sp. MDC70]
          Length = 341

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 196/343 (57%), Positives = 255/343 (74%), Gaps = 2/343 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRL 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R          Y+GGI+AFV YL+++K P+          +D 
Sbjct: 61  RELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 119 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AK
Sbjct: 179 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 239 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 298

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLIT
Sbjct: 299 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 341


>gi|253682980|ref|ZP_04863766.1| DNA topoisomerase [Clostridium phage D-1873]
 gi|253560809|gb|EES90272.1| DNA topoisomerase [Clostridium phage D-1873]
          Length = 678

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 136/676 (20%), Positives = 272/676 (40%), Gaps = 56/676 (8%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGS 73
            ++ LKG + V+KR S+ +G  D   G  H ++E++ N+ID   +G+ D I V  + D S
Sbjct: 3   DLKRLKGSERVRKRVSVMMGS-DDIRGCQHTLFEIVSNSIDRHRKGFGDYIKVIKHEDLS 61

Query: 74  CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS 133
            T+ D+  G+P D +++E     ++ +  L+AG  ++  S   + GL+G+G+      S 
Sbjct: 62  YTIIDHADGLPMDWNEKEHAYNWDLALKVLYAGDNYDANS--TALGLNGLGLCSSQYASE 119

Query: 134 WLKLRIKREGNIYEMSFINGILDNP----------------------LVVTGSAGNDTGT 171
           ++++   +E   Y +    G   +                       L+V  +  N TGT
Sbjct: 120 FMEVISYKEDKKYTVKCKKGRPIDKETGEFICEDDDNLFTKEQGNRVLLVESNTENKTGT 179

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + + P  ++F+  D + D +  +L + S +N  ++I + D++                 
Sbjct: 180 YIHYKPDLEVFTNIDISIDWINDKLDKQSMVNKGLKIEIYDEKEDRLYTHFYESGIKDYI 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW-----NDGYHENVLCFTNNIPQKDGG 286
                D +   ++    + +G       +    +      +     +  + N+     GG
Sbjct: 240 KTISNDNNFSDVIYFTDKGKGRDKADKPEYDYNYEIALVFNNEINRLEYYHNSSELLQGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           +    +  A T  I  Y + +    K++  +   D ++    V+S       +++QTK  
Sbjct: 300 STSDAISLAFTYAINEYAKNNNVFNKNESKIKFTDIQDSLICVISSFSTMTSYANQTKLS 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + +  ++      + + L  +  E+ LEA  IV ++L      D A +++   R K  L 
Sbjct: 360 IDNKFIKDFTNQSLKEKLKLYFIENKLEADRIVNQILINKRANDKAEKSKIEIRNK--LQ 417

Query: 407 IASLPG--------KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            ++  G        K  D      ++  L + EG S   +  +         + LRG+ +
Sbjct: 418 QSNKKGLSLKIEGLKDCDMRNSQLEERILLVDEGVSPNSTIIKSFDGRIMGAMGLRGRFI 477

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDS-----------FDINKLRYHKIIIMTDAD 507
           N  ++    +L +    TLITALG GI               F+++ LRY  + I+ DAD
Sbjct: 478 NSLKSSVTDVLKNVPAHTLITALGCGIEIPYEERKIFKDIQTFNLDNLRYGSVGILCDAD 537

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
             G  I   L+TFF++ +P+L+  G ++++K P + IT  K   Y  DE      + +  
Sbjct: 538 AFGKGINLALITFFYKFIPTLLKQGRVFLVKSPRFCITTKKDTFYAYDENEKNTIIQDLQ 597

Query: 568 ---LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
              +  +I +        +       +    +    I+  Y   ++  I+          
Sbjct: 598 SKGIKYDIGIKKGLGEFNTDEFWTYVLSPEAREKTFIQLDYNTVEEDIIKY--YFDALMG 655

Query: 625 ESDQEINVSLASKLAN 640
           E+  E    +   + N
Sbjct: 656 ENIDERKKYIREHITN 671



 Score = 41.1 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 10/69 (14%)

Query: 740 KGLGEMNASQLWETT--LNPDTR--SLLRVKITDASQADDL---FSRLMGDEVEPRREFI 792
           KGLGE N  + W  T  L+P+ R  + +++      + D +   F  LMG+ ++ R+++I
Sbjct: 609 KGLGEFNTDEFW--TYVLSPEAREKTFIQLDYN-TVEEDIIKYYFDALMGENIDERKKYI 665

Query: 793 QENSLPSAL 801
           +E+     L
Sbjct: 666 REHITNVDL 674


>gi|318066895|emb|CBY89159.1| DNA gyrase subunit B [Salinicola halophilus]
          Length = 349

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 199/352 (56%), Positives = 259/352 (73%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R+  ++E  + +G+   PL V G     +GT++ F PSS+ F+ 
Sbjct: 1   VSVVNALSEQLKLTIWRKNQVHEQIYRHGVPQAPLAVVGDTE-KSGTQINFKPSSETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+R  + RE    Y+GG++AFV +L+ ++  L 
Sbjct: 60  IEFHYDILAKRLRELSFLNSGVAIRLMDER--DGREELFHYEGGLKAFVDHLNTNRTALN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I +++AM+WND + ENV C+TNNIPQ+DGGTH++G R+ALTR + SY+
Sbjct: 118 PVFHFSMQREDGIGVEVAMQWNDTFAENVYCYTNNIPQRDGGTHMAGFRAALTRTLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V+  ++   
Sbjct: 178 EAEDIQKKAKVATAGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVDQELSRQF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L EHP EAK IV K++DA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SDYLVEHPGEAKSIVNKMIDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|51571571|emb|CAH18952.1| gyrase B [Corallococcus coralloides]
          Length = 351

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 182/354 (51%), Positives = 248/354 (70%), Gaps = 3/354 (0%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            VN LS W K+R++R G IYE S+  G+ +      G   +  GT + F P S +    D
Sbjct: 1   CVNFLSEWFKVRVQRAGKIYEQSYARGVSNGSPQEVG-TTDKRGTTIHFKPDSMVMETVD 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN++TL  RLREL+FLN+ + I++ D+R+ +  +    ++GGI +FV YL++ K+ L   
Sbjct: 60  FNFETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFEGGISSFVEYLNKAKEALHDK 117

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           P+ I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + SY EK
Sbjct: 118 PVYIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAALTRTLNSYAEK 177

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VND L++
Sbjct: 178 GSLWKDLKDTPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGLVEQMVNDQLAS 237

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +LEE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLADC  RDP +SE
Sbjct: 238 FLEENPPLAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQSRDPHESE 297

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           L++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITA
Sbjct: 298 LYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLITA 351


>gi|318066847|emb|CBY89135.1| DNA gyrase subunit B [Halomonas halodenitrificans]
          Length = 349

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 197/352 (55%), Positives = 253/352 (71%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS  L+L + R G+++E  + +G+   PL   G   N  GT V F PSS+ F  
Sbjct: 1   ISVVNALSEELRLTVWRAGSVHEQLYRHGVPQAPLSAVGKTENA-GTRVHFRPSSETFGN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F++D L  RLRELSFLNS V I LID+RS +       Y+GG++AFV +L+ +K  L 
Sbjct: 60  IEFHFDILAKRLRELSFLNSGVAIRLIDERSGKE--ELFHYEGGLKAFVDHLNTNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+W+D ++EN+ C+TNNIPQ+DGG HL+G R+ALTR +  Y+
Sbjct: 118 PVFHFNTEREDGVGVEVAMQWSDSFNENIFCYTNNIPQRDGGAHLAGFRAALTRTLNGYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K S  GDD REG T+++S+K PDP+FSSQTK+KLVSSEV++ VE  ++  L
Sbjct: 178 ESEGLLKKSKISTAGDDAREGLTAIISVKAPDPKFSSQTKDKLVSSEVKTAVEQEMSRLL 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 GEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SELFLVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|148470254|gb|ABQ66074.1| gyrase b [uncultured bacterium]
          Length = 432

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 157/430 (36%), Positives = 218/430 (50%), Gaps = 25/430 (5%)

Query: 102 RLHAGGKFNQKS----YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
            LHAGGKF++KS    Y  SGGLHGVGVSV NALS  L++ +KREG ++ M+F +G +  
Sbjct: 6   VLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMTFGDGFVIE 65

Query: 158 PLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
           PL V G+ G  +TGT V   P    F     N   L+  LR  + L S V + L  +   
Sbjct: 66  PLAVQGTCGARNTGTRVRVWPDPRYFDEPQINLIELERGLRSKAVLLSGVSVRLRKEGDG 125

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID-----------LAMRW 265
              E T  Y GG+E +++        L+       G R     +            A  W
Sbjct: 126 RTLEQTWHYPGGLEQYLTERLGEDPLLIPV---FTGDRFFGVEEGDSFAPGEGASWAFSW 182

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++        F N IP   GGTH +GLR+ L   + S++E      +    +  +D    
Sbjct: 183 HETRSLQGESFVNLIPTPLGGTHEAGLRTGLFEALKSFIEHHGLLPRG-VRLQLEDVSAR 241

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
              +LSI+M DP+F  QTK+KL S E   +V + V D    WL +H    K +   V+  
Sbjct: 242 LQFILSIRMLDPQFQGQTKDKLTSREALKLVSTLVRDPFEHWLNQHVEHGKALADLVIRQ 301

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +M R  + +      ++    +A LPGKL DC      + ELFLVEGDSAGGSAK  R++
Sbjct: 302 AMARMKSGQK---IEKRKSSGVAVLPGKLTDCESERIDERELFLVEGDSAGGSAKMARNK 358

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYHKIIIM 503
             QAILPLRGK+LN       ++ ++ EI  +  ALG         ++  + RY +IIIM
Sbjct: 359 LTQAILPLRGKVLNSFEVEQGRLFANTEIHDIAVALGIDPHGRGEPVDLSQRRYDRIIIM 418

Query: 504 TDADVDGAHI 513
           TDADVDG+HI
Sbjct: 419 TDADVDGSHI 428


>gi|18266788|sp|O61078|TOP2_LEICH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|6453822|gb|AAC05295.2| DNA topoisomerase II [Leishmania chagasi]
          Length = 1236

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 124/679 (18%), Positives = 244/679 (35%), Gaps = 58/679 (8%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------------GLHHMIYEVL 49
           A   + L  +D V  RP MY+G  + +                       GL  ++ E+L
Sbjct: 4   ASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEIL 63

Query: 50  DNAIDESLEGYA----DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
            NA D             I++ ++  G  TV ++G G+P    +E  +   E++   L  
Sbjct: 64  LNAADNINNSKGSVRQTYISIHISDTGEITVENDGAGLPIVRSREHKMYIPEMVFGHLLT 123

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--ILDNPLVVTG 163
              +N  S   + G HG G  + N LS+   +  + +G    MS+ +   +   P V   
Sbjct: 124 SSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGRESHMSWTDHMRMATAPRVNRV 183

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYD-----TLQHRLRELSFLNSSVQISLIDKRSPEP 218
                + T V F+P    F   + +        L  R+ +L+ + S +++ L +      
Sbjct: 184 DPKEKSVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNNVPFGFR 243

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                     +      +                +  N S+    +      + ++   N
Sbjct: 244 TFTDYARLYSLPGLDGSMPPEP---------FVYTSPNGSVAYVPQLTQSP-KRIVGVVN 293

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            +   +GGTH +     L   + S  +    + K   +      +  FT ++ +    P+
Sbjct: 294 GVVTYNGGTHCNAAMDILDSCLDSLSKNFKKNGKVVDTNR---VQRHFTVLVFLIQTQPK 350

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F SQ+K +LVS+     +     +    +LE  P     +       +   +    A   
Sbjct: 351 FDSQSKARLVSTVTMPRMPKNTLEK---YLERMPFLEAHVNSMDDQLANELNKEIGAGRR 407

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ---GRSRENQAILPLRG 455
              K ++   +                 L + EGDSA   A        ++   + PLRG
Sbjct: 408 LSSKTLISAITKLVDATSSQPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVFPLRG 467

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K+LNV      ++ + + +  L  +LG  +G++     +LRY ++++MTD D DG+HI+ 
Sbjct: 468 KLLNVRNKNLKRLKTCKGLQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDADGSHIKG 527

Query: 516 LLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
           L++  F    P L+ N  G++ +   P+  I      + V    S  D+   Q       
Sbjct: 528 LVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRWQRAHPSAR 587

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633
                   +  +      +    ++K I     +      +  ++  VF+    +     
Sbjct: 588 YTAKYYKGLGTSTTAEGKEYFADMEKNIMQLTVDAR----DHQLLDSVFDAAEVEWRKEW 643

Query: 634 LASKLANRLNFIAEKSEKS 652
           +    A +     ++S+K+
Sbjct: 644 MTKANAFQGEVDIDRSKKT 662


>gi|220680506|dbj|BAH10742.1| DNA gyrase subunit B [Nocardia brevicatena]
          Length = 400

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 167/403 (41%), Positives = 238/403 (59%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  IK +G  +  ++ +      L V G    +TGT + F P  ++F    FN
Sbjct: 1   NALSTRLEAEIKHDGYHWSQTYKDAAP-GKL-VQGEPTRETGTTIRFWPDPEVFETTTFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I L D+R  E                               
Sbjct: 59  FETVARRLQEMAFLNKGLTIVLTDERVSEAEITDDVVSETAEVPKHAENGEQQPAEPKVK 118

Query: 223 ---MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y GG+E FV +++R K P+  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLEEFVRHINRTKTPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTSVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR DK+L + E+  +ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 VEKARIDKVLKNNEVQAIITAFGTGI-HDEFDIGKLRYHKIVL 400


>gi|223674716|gb|ACN13054.1| DNA gyrase subunit B [Pseudomonas marginalis]
          Length = 322

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 171/325 (52%), Positives = 235/325 (72%), Gaps = 3/325 (0%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +  
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE- 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++ F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+G
Sbjct: 60  TTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+ AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGT
Sbjct: 118 GLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KL
Sbjct: 178 HLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 237

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           VSSEV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRK  LDI
Sbjct: 238 VSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKSALDI 297

Query: 408 ASLPGKLADCSERDPKKSELFLVEG 432
           A LPGKLADC E+DP  SEL+LVEG
Sbjct: 298 AGLPGKLADCQEKDPALSELYLVEG 322


>gi|119369984|gb|ABL68006.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 146/441 (33%), Positives = 201/441 (45%), Gaps = 42/441 (9%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKFN   YKVSGGLHGVGVSVVNALS  L+L I +EG ++   +  G+ D
Sbjct: 1   EVIMTVLHAGGKFNNSLYKVSGGLHGVGVSVVNALSRRLELEIYQEGRLHRQVYHQGVPD 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G+     GT + F P   I     F +DTL HR REL+FLN  + I L ++   
Sbjct: 61  APLSVVGTTA-LRGTSIRFWPDLSIMETDTFLFDTLAHRFRELAFLNPILTIVLREE--E 117

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-------RDNISIDLAMRWNDGY 269
            PRE T  ++GGI+++  +L+ +KK  +   +  +         R  + +       +  
Sbjct: 118 SPREETFHFEGGIKSYNEFLNENKKT-IPEVLFFRREPSLRSPVRGCLPVSGDNGQRNDP 176

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
                 F         G   S  +                +      + G+D RE     
Sbjct: 177 RFCEQYFYQGGWHPYQGIPDSPAKGH-------QPFYQGQAANKGEELRGEDIRERAYRR 229

Query: 330 LSIKMPDPRFSS------------QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
                     S             ++   L        V     D      + +P     
Sbjct: 230 CQCPYSRSAVSGADQGQAGVLLGVRSHGNLFGRGDAGTVSGISPDCQKDRCQGNPDGHGQ 289

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
              +    +  ++   R    +     L                 +   L  VEGDSAGG
Sbjct: 290 GSGEKGQRACKKEKRSRRIQPSGETCGLSGKRSC-----------EMRALHCVEGDSAGG 338

Query: 438 SAKQGRSRENQAILPLRGKILNVERA-RFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           SAKQGR R+ QAILPL+GKILNVE+A   ++ ++  E+  LITA+G G+G + +    LR
Sbjct: 339 SAKQGRDRKFQAILPLKGKILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLR 398

Query: 497 YHKIIIMTDADVDGAHIRTLL 517
           YHKIII+TDADVDG+HIRTLL
Sbjct: 399 YHKIIIITDADVDGSHIRTLL 419


>gi|220680588|dbj|BAH10783.1| DNA gyrase subunit B [Nocardia xishanensis]
          Length = 400

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 168/403 (41%), Positives = 244/403 (60%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  +  +G  +   + +      L + G A   TGT + F P ++IF    FN
Sbjct: 1   NALSSRLEAEVDHDGYHWTQEYKDSKP-GKL-MQGEATKRTGTTIRFWPDAEIFETTTFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I+L D+R                              P+ +
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSGSEVTDEVVSDTAEAPKHLDENAPAAEEPKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 VRTYHYPGGLEDFVKHINRTKQPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ DP+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKISDPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 VEKARIDRVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 400


>gi|207107914|dbj|BAG71969.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 411

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 173/414 (41%), Positives = 245/414 (59%), Gaps = 38/414 (9%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ +++ I  +G  +  +F +   D   +V G     TGT V F P + IF+
Sbjct: 1   GISVVNALSTKVEVEIDVDGFHWSETFTDSKPDG--LVKGEPTRKTGTTVRFWPDASIFT 58

Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216
               FN +T+  RL+E++FLN  + I+L D+R                            
Sbjct: 59  ETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNGEGEEGTTETAEEIKSD 118

Query: 217 --------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   +P+  T  Y  G+  ++ +L+R K P+ +S I   G      +++AM+WN G
Sbjct: 119 EEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGTGHEVEIAMQWNAG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALTR + SY  +    K+   ++ GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKEKDDNLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ DP+F  QTK KL ++EV+S V     + +  W E +P EAKII+ K ++++  
Sbjct: 239 VISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANPAEAKIIINKAVESAHA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AAR+AR+L RRK   DI  LPGKLADC   DP K E++LVEGDSAGGSAK GR    Q
Sbjct: 299 RQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEGDSAGGSAKTGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDLAKLRYHKIVL 411


>gi|80159785|ref|YP_398529.1| putative DNA gyrase B subunit [Clostridium phage c-st]
 gi|78675375|dbj|BAE47797.1| putative DNA gyrase B subunit [Clostridium phage c-st]
          Length = 678

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 135/676 (19%), Positives = 272/676 (40%), Gaps = 56/676 (8%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGS 73
            ++ LKG + V+KR S+ +G  D   G  H ++E++ N+ID   +G+ + I V  + D S
Sbjct: 3   DLKRLKGSERVRKRVSVMMGS-DDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKHEDLS 61

Query: 74  CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS 133
            T+ D+  G+P D +++E     ++ +  L+AG  ++  S   + GL+G+G+      S 
Sbjct: 62  YTIIDHADGLPMDWNEKEHAYNWDLALKVLYAGDNYDANS--TALGLNGLGLCSSQYASE 119

Query: 134 WLKLRIKREGNIYEMSFINGILDNP----------------------LVVTGSAGNDTGT 171
           ++++   +E   Y +    G   +                       L+V  +  N TGT
Sbjct: 120 FMEVISYKEDKKYTVKCKKGRPIDKETGEFICEDDDNLFTKEQGNRVLLVESNTENKTGT 179

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + + P  ++F+  D + D +  +L + S +N  ++I + D++                 
Sbjct: 180 YIHYKPDLEVFTNIDISIDWINDKLDKQSMVNKGLKIEIYDEKEDRLYTHFYESGIKDYI 239

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW-----NDGYHENVLCFTNNIPQKDGG 286
                D +   ++    + +G       +    +      +     +  + N+     GG
Sbjct: 240 KTISNDNNFSDVIYFTDKGKGRDKADKPEYDYNYEIALVFNNEINRLEYYHNSSELLQGG 299

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           +    +  A T  I  Y + +    K++  +   D ++    V+S       +++QTK  
Sbjct: 300 STSDAISLAFTYAINEYAKNNNVFNKNESKIKFTDIQDSLICVISSFSTMTSYANQTKLS 359

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + +  ++      + + L  +  E+ LEA  IV ++L      D A +++   R K  L 
Sbjct: 360 IDNKFIKDFTNQSLKEKLKLYFIENKLEADRIVNQILINKRANDKAEKSKIEIRNK--LQ 417

Query: 407 IASLPG--------KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            ++  G        K  D      ++  L + EG S   +  +         + LRG+ +
Sbjct: 418 QSNKKGLSLKIEGLKDCDMRNSQLEERILLVDEGVSPNSTIIKSFDGRIMGAMGLRGRFI 477

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDS-----------FDINKLRYHKIIIMTDAD 507
           N  ++    +L +    TLITALG GI               F+++ LRY  + I+ DAD
Sbjct: 478 NSLKSSVTDVLKNVPAHTLITALGCGIEIPYEERKIFKDIQTFNLDNLRYGSVGILCDAD 537

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
             G  I   L+TFF++ +P+L+  G ++++K P + IT  K   Y  DE      + +  
Sbjct: 538 AFGKGINLALITFFYKFIPTLLKQGRVFLVKSPRFCITTKKDTFYAYDENEKNTIIQDLQ 597

Query: 568 ---LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
              +  +I +        +       +    +    I+  Y   ++  I+          
Sbjct: 598 SKGIKYDIGIKKGLGEFNTDEFWTYVLSPEAREKTFIQLDYNTVEEDIIKY--YFDALMG 655

Query: 625 ESDQEINVSLASKLAN 640
           E+  E    +   + N
Sbjct: 656 ENIDERKKYIREHITN 671



 Score = 41.1 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 10/69 (14%)

Query: 740 KGLGEMNASQLWETT--LNPDTR--SLLRVKITDASQADDL---FSRLMGDEVEPRREFI 792
           KGLGE N  + W  T  L+P+ R  + +++      + D +   F  LMG+ ++ R+++I
Sbjct: 609 KGLGEFNTDEFW--TYVLSPEAREKTFIQLDYN-TVEEDIIKYYFDALMGENIDERKKYI 665

Query: 793 QENSLPSAL 801
           +E+     L
Sbjct: 666 REHITNVDL 674


>gi|318066845|emb|CBY89134.1| DNA gyrase subunit B [Halomonas halocynthiae]
          Length = 349

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 192/352 (54%), Positives = 249/352 (70%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  LKL I R   ++E  + +G+  +PL V G     +G+ V F PS++ F  
Sbjct: 1   VSVVNALSEELKLTIWRNNEVHEQVYHHGVPASPLKVVGQTE-KSGSRVHFRPSAETFEN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+Y+ L  RLRELSFLNS V I L+D+RS +       Y+GG+ AFV +L+ +K  L 
Sbjct: 60  IEFHYEVLAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLRAFVDHLNSNKTVLN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                 +   D + +++AM+W D + EN+ C+TNNIPQ+DGG HL+G R+ LTR +  Y+
Sbjct: 118 PVFHFNEEREDGVGVEVAMQWTDTFTENIFCYTNNIPQRDGGAHLAGFRAGLTRTLNHYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    + + K    GDD REG T+++S+K+PDP+FSSQTKEKLVSSEVR+ VE  +    
Sbjct: 178 EAEGLAGRAKVQTSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVRTAVEQEMGKLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K++DA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP  
Sbjct: 238 SEYLTEKPNEAKAIVGKMIDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|220680578|dbj|BAH10778.1| DNA gyrase subunit B [Nocardia uniformis]
          Length = 400

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 162/403 (40%), Positives = 233/403 (57%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  I R+G  +   + +      L V G      GT + F    +IF    +N
Sbjct: 1   NALSTRLQAEIDRDGYHWSQEYKDSKP-GKL-VQGDTTKRKGTTIRFWADPNIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  E                               
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSEGDVTDEVVSDTAEAPKHADETAAAAATPKVK 118

Query: 223 ---MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y GG+E +V +++R K P+  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLEDYVKHINRTKTPIHNSIVAFTGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L  W E +P +AK IV K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLGHWFEANPADAKTIVTKAVSSAQARMAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE++R DK+L + E+  +ITA GTGI  D FD+ KLRYHKI++
Sbjct: 359 VEKSRIDKVLKNNEVQAIITAFGTGI-HDEFDLAKLRYHKIVL 400


>gi|325191142|emb|CCA25924.1| DNA topoisomerase putative [Albugo laibachii Nc14]
          Length = 1141

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 122/576 (21%), Positives = 218/576 (37%), Gaps = 48/576 (8%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD--IITVTLNMDGS----CTVSDNGRGI 83
           MY+   +    L+ +  E++ NA+D           + V ++          + ++GRGI
Sbjct: 27  MYLESIEYVPALYKIFDEIIVNALDNKKRD-CKMKALDVVIDTTNEKQPWIMIYNDGRGI 85

Query: 84  PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-- 141
           P  +H  E I   E++   L  G  F+  S + +GG HG G  + N  S+   +      
Sbjct: 86  PVQIHPTEQIYIPELVFGNLLTGSNFDDHSTRFTGGRHGYGAKLTNIFSNTFIVETGDTV 145

Query: 142 EGNIYEMSFINGI--LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRL 196
            G  Y+  + N +  L+ P +   SAG    T ++F P   +F ++  + D    L+ R+
Sbjct: 146 TGMKYKQIWRNNMRELEEPHIEPLSAGVKDYTRISFSPDLKLFQLESLSTDILRLLKKRV 205

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
            +++     V++SL     P     +          +S    +   +            +
Sbjct: 206 YDVAGCVDDVKVSLNGSVIPISGFESYIRGFEFHQKLSTTKGNSNCVTSRVN----KHWH 261

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +              + F N I    GGTH+  +   +TR++  ++ K       + +
Sbjct: 262 IGV-----LPSEVGFTQVSFVNGISTLRGGTHVLHVVEQITRRVADHIVKK----YSEIN 312

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
                 +      ++  + +P F SQ KE L S              L     +  +   
Sbjct: 313 ATPAQVKPYLAVYINCMIENPTFDSQMKECLTSRPSSF----GTLCNLPERFFKAVIRDT 368

Query: 377 IIVKKVLDASMVRDAAR-RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
            IV+  +     +  +    +  T R   +                  +  L L EGDSA
Sbjct: 369 GIVEHTVQGIRSKQRSALMKKVSTARSKSIFNVPKLEDANLAGGSQSHECSLILTEGDSA 428

Query: 436 -----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
                 G A  GR R    + PLRGK+LNV  A  +++  + E   L T LG  +G+   
Sbjct: 429 KALAVAGLAVVGRDR--FGVFPLRGKLLNVRDATVNQLSKNSEFMNLCTILGLQMGESYD 486

Query: 491 DINK---LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF-LYIIKPPLYGIT- 545
            I K   LRY  +I+MTD D DG+HI+ LL   F    P+L+ +   + +   P+   T 
Sbjct: 487 TIKKRQQLRYGHVIVMTDQDYDGSHIKGLLFNIFHTFWPNLLRSSEFIQVFVTPIIKATS 546

Query: 546 ----RGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
               + + +          D+  + + +E    +  
Sbjct: 547 KRDSKHEKVLSFYSLPEYLDWRKSLAANEGKNYYIK 582


>gi|237769859|dbj|BAH10712.2| DNA gyrase subunit B [Nocardia anaemiae]
          Length = 399

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 165/402 (41%), Positives = 235/402 (58%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L+  I  +G  +  ++ +      L V G     TGT + F    +IF    +N
Sbjct: 1   NALSHRLEAEIDHDGYHWSQTYKDAKP-GKL-VQGEPTKRTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRS----------------------------PEPRE 220
           ++T+  RL+E++FLN  + I L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTIVLTDERVSDAEVTDEVVSETAEAPKHADEEAPAPAHKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVKHINRTKQPIHNSVVSFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K    ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL + EV+S V+   N+ LS W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNPEVKSFVQRTCNEHLSHWFEANPADAKTIVNKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 EKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 399


>gi|207678281|gb|ACI25154.1| DNA gyrase B [Phaeobacter sp. M8-3.2]
          Length = 340

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 205/340 (60%), Positives = 262/340 (77%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
           WL+LRI R+G  +   F  G     L V G  G+ TGTEV FL S+D FS  +++++TL+
Sbjct: 1   WLELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNLEYSFETLE 60

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLREL+FLNS V+I LID+R  E  E+ +FY+GG++ FV YLDR K P+M++PI I G 
Sbjct: 61  KRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPIYITGD 120

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           +D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S  +KK+
Sbjct: 121 KDDIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKKE 180

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ L+ W EE+P 
Sbjct: 181 KVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAEWFEENPN 240

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AK IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+FLVEGD
Sbjct: 241 QAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVFLVEGD 300

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           SAGGSA+ GR R  QAILPLRGKILNVERARFD+ML SQE
Sbjct: 301 SAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQE 340


>gi|148762419|dbj|BAF63911.1| DNA gyrase subunit B [Oceanobacillus picturae]
          Length = 324

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 150/327 (45%), Positives = 220/327 (67%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ +  +  I+ + F  G+    + V G   + TGT  
Sbjct: 1   YKVCGGLHGVGASVVNALSTNLEVHVHLDNKIHYLGFKKGVPQGEIEVVGET-DVTGTTT 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F+P  +IF   +++YDTL  RLREL+FLN  + I++ DKR+ E       Y+GGI+++V
Sbjct: 60  HFVPDPEIFDTTEYDYDTLTQRLRELAFLNKGITITVEDKRTDEEPVSYF-YEGGIKSYV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++R K+ L   P   +G    IS+++A+++N+G+  ++  F NNI   +GG+H SG R
Sbjct: 119 EFINRTKEVLH-EPFYAEGEDQGISVEVAIQYNEGFASSLYSFANNIHTYEGGSHESGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           + LTR I  Y  K+   +++  ++ GDD REG T+++S+K PDP+F  QTK KL +SE R
Sbjct: 178 TGLTRVINDYARKNNLYRENDPNLSGDDVREGMTAIVSVKHPDPQFEGQTKTKLGNSEAR 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           ++ +S  ++  S +L E+P  AKIIV K L AS  R AA++AR+LTRRK  L+I++LPGK
Sbjct: 238 TITDSVFSEMFSKFLYENPSVAKIIVDKGLMASRARLAAKKARELTRRKSALEISNLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 LADCSSKDAKISELYIVEGDSAGGSAK 324


>gi|220680512|dbj|BAH10745.1| DNA gyrase subunit B [Nocardia concava]
          Length = 399

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 166/402 (41%), Positives = 240/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +  +G  +   + +      L V G A   TGT + F P  +IF    F+
Sbjct: 1   NALSTRLEADVDTDGYHWTQEYKDSKP-GKL-VQGGATKRTGTTIRFWPDPEIFETTTFS 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  E   I                           
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDQRVAEGDVIDEVVSETAEAPKHLDENAPAETPKIKT 118

Query: 223 --MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y GG+E +V +++R K P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDYVKHINRTKTPIHNSIVAFTGKGTGHEVEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+ + ++ GDD REG  +++S+K+ DP+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIREGLAAIVSVKIADPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ +S W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPAKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 EKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 399


>gi|220680496|dbj|BAH10737.1| DNA gyrase subunit B [Nocardia arthritidis]
          Length = 399

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 166/402 (41%), Positives = 239/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I  +G  +  ++ + I    L + G     TGT + F    +IF    +N
Sbjct: 1   NALSSRLEAEIDHDGYHWSQTYKDAIP-GKL-IQGEPTKKTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAEAPKHAEEGTAPAEHKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKRLIKEKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 EKARIDKVLKNNEVQSIITAFGTGI-HDEFDIGKLRYHKIVL 399


>gi|261488464|emb|CAU94907.1| DNA gyrase subunit B [Roseateles depolymerans]
 gi|261488466|emb|CAU94908.1| DNA gyrase subunit B [Roseateles depolymerans]
          Length = 336

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 173/340 (50%), Positives = 235/340 (69%), Gaps = 22/340 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS WL+L ++REG +
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRREGKV 59

Query: 146 YEMSFINGILD------------NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTL 192
           +++ F  G+              +P+ + G   +  GTEV FLP ++IF+    F+YD L
Sbjct: 60  HQLEFRKGVPQDRVIEVRDGFETSPMKIVGET-DKRGTEVHFLPDTEIFTQNHEFHYDIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I L D+R+ +       Y GG+  FV ++++ K  L  +    QG
Sbjct: 119 AKRLRELSFLNNGVKIRLADERNNKE--DNFAYSGGVRGFVEFINKGKTTLHPNIFHAQG 176

Query: 253 SR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +      NI ++++M+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 DKLSDQGTNIGVEVSMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR  VE  V   L+ W
Sbjct: 237 ELAKKAKVDVSGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAAKLNDW 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           L E+P++AKII  K++DA+  R+AAR+AR++TRRKGVLD 
Sbjct: 297 LLENPIDAKIICGKIVDAARAREAARKAREMTRRKGVLDG 336


>gi|220680546|dbj|BAH10762.1| DNA gyrase subunit B [Nocardia nova]
          Length = 398

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 163/401 (40%), Positives = 238/401 (59%), Gaps = 30/401 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS +   I R+G  +   + +      L V G   + TGT   F    D+F    +N
Sbjct: 1   NALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTGTTQRFWADPDVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDK---------------------------RSPEPREI 221
           ++T+  RL+E++FLN  + I+L D+                              + +  
Sbjct: 59  FETISRRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETAEAPKHDEGAAAPEHKVKTR 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T  Y GG+E FV +++R K+P+  + +          +++AM+WN GY E+V  F N I 
Sbjct: 119 TYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGHELEVAMQWNSGYSESVHTFANTIN 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F  
Sbjct: 179 THEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQFEG 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L RR
Sbjct: 239 QTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARELVRR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NVE
Sbjct: 299 KSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 KARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 398


>gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis elegans
          Length = 2434

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 131/705 (18%), Positives = 245/705 (34%), Gaps = 81/705 (11%)

Query: 22   DAVKKRPSMYIGDT-----------DGES------------GLHHMIYEVLDNAIDE-SL 57
            + V  RP  YIG             D E+            GL  +  E+L NA D  + 
Sbjct: 1306 EHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVNAADNKAR 1365

Query: 58   EGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116
            +   + + V L+ + +  +V +NG G+P ++H  EGI    ++   L     ++    K 
Sbjct: 1366 DSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNYDDSEIKT 1425

Query: 117  SGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILD---NPLVVTGSAGNDTGT 171
             GG +G G  + N  S    +     R    +   + + +       +V          T
Sbjct: 1426 VGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDYT 1485

Query: 172  EVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSV-QISLIDKRSPEPREITMFYKG 227
            +V F+P  + F +   + D +     R+ E++        + L  ++             
Sbjct: 1486 KVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVDGFEDYVKMF 1545

Query: 228  GIEAFV--SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
               + +   +        +       G    +               ++ F NNI  + G
Sbjct: 1546 NDSSSLLFLHPTPRWHVGVAKRNNFFGESHVV------------LPKIVSFVNNINTEKG 1593

Query: 286  GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
            G+H+  +   +   I   V+         +SV     +   +  ++  + +P F SQTKE
Sbjct: 1594 GSHVDYVMDKIVNIIKPIVDSK--LGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKE 1651

Query: 346  KLVSS-EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
             L +  +    +        + W E+  L   I+ + +          R +    R    
Sbjct: 1652 TLTTKAKNFGSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKRVSVSSVRDIVK 1711

Query: 405  LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVE 461
            L+ A   G          +K  L L EGDSA   A  G     RE   + PL+GK+LNV 
Sbjct: 1712 LEDAEWAG-----ITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVS 1766

Query: 462  RARFDKMLSSQEIGTLITALGTGIGQDSF-DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
                 +   ++EI  L+  LG      +      LRY +++I+ D D DG+HI+ L++ F
Sbjct: 1767 NLDDARASKNEEISNLLRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNF 1826

Query: 521  FFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
              +  PSL+H +GF+   + PL    +G  ++          +   +   +    +    
Sbjct: 1827 IHKFWPSLVHTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWADVEEGGKWKIKYYKGL 1886

Query: 580  GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
            G  + N+            +   D   +                   D++ +      + 
Sbjct: 1887 GTSTSNE----------AREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKSDERKEWIR 1936

Query: 640  NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFS 684
               N I  + ++              R++ GV++    E   I S
Sbjct: 1937 RSENEITNEDDEQKKA----------RMSDGVEDLQRFESQRIQS 1971


>gi|60459470|gb|AAX20071.1| DNA gyrase subunit B [Leptospira santarosai serovar Shermani]
          Length = 142

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 78/143 (54%), Positives = 104/143 (72%), Gaps = 1/143 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I  +   D    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIIFSFLPDNIMEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGILDNPL 159
           + + ++G IY   +  GI  +P+
Sbjct: 120 VEVHQKGKIYTQKYEKGIPVSPV 142


>gi|71030782|ref|XP_765033.1| DNA topoisomerase II [Theileria parva strain Muguga]
 gi|68351989|gb|EAN32750.1| DNA topoisomerase II, putative [Theileria parva]
          Length = 1378

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 128/637 (20%), Positives = 242/637 (37%), Gaps = 83/637 (13%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT----------------------DGESGLHHMIYEVL 49
            +  Q    L+ +  RP  YIG T                      D   GL+ +  E+L
Sbjct: 8   EERYQKKTQLEHILLRPDTYIGSTELNNQQMWVFDEEKNRMVYETIDYVPGLYKIFDELL 67

Query: 50  DNAID-----------ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
            NA D           E +      I VT++   G+  V ++G  IP  +H E  +   +
Sbjct: 68  VNAADVYARQLSDPTLEKM----TCIKVTIDRGTGAIVVYNDGEPIPIQIHNEHKMYVPQ 123

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-----IYEMSFIN 152
           +I   L     ++    +V+GG +G G  + N  S    + +   GN      ++M++ +
Sbjct: 124 LIFGELLTSDNYDDSEERVTGGRNGFGAKLANIFSKTFTVVV---GNKKTKKKFKMTWCD 180

Query: 153 GILDNP-LVVTGSAGNDTGTEVTFLPSSDIFSVQDFN---YDTLQHRLRELSFLNSSVQI 208
            +          S       ++TF+P    F++ + +   Y  L+ R+ +++     V++
Sbjct: 181 NMTKTKSPAQIESYMGPDFVKITFIPDYSRFNLTELDEGTYKVLKKRVYDMAGT-LGVKV 239

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
            L ++R               E     +  +                    ++ +  ++ 
Sbjct: 240 FLNNERIKVKDFKDYVNLYLPEDATEIVKIY--------------EKMYRWEVVISTSED 285

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
               V  F N+I    GGTH+S +   L + +T    K     K    +  +  +     
Sbjct: 286 GFRQV-SFVNSINTIKGGTHVSHVVDPLVQSLTK---KVNSKNKGGIELKPNQIKNHIFV 341

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            ++ ++ +P F SQTKE L +  V+   +  ++D     + +  +    I+  + +    
Sbjct: 342 FINCQIVNPSFDSQTKETLTTKIVKFGSKYTMSDKTLNQVLKSKIFDN-ILSWLHE--KT 398

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGR 443
               ++   + +    L              R   +  L L EGDSA      G +  GR
Sbjct: 399 NIELKKKMKVAKGNDKLFGIPKLEDANKAGTRYATECTLILTEGDSAKTSCLAGLSVVGR 458

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI-GQDSFDINKLRYHKIII 502
            +    + PL+GK+LNV  A + ++  + E+  ++  +G  I  +   D + LRY  I+I
Sbjct: 459 DK--YGVFPLKGKLLNVREASYKQLTQNIEVQNILKIMGLDITNKLRQDSSGLRYGSIMI 516

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITR--GKSLQYVKDEESL 559
           MTD D DG+HI+ LL+  F    P LI  NGF+     P+  +T      +      E  
Sbjct: 517 MTDQDYDGSHIKGLLINMFHNFWPKLIQFNGFIKEFITPIIKVTNKSNNQVHSFFTIEDF 576

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            ++     +S     +    G  S N+ + +  +  +
Sbjct: 577 NNWKQTVDISNYRIKYYKGLGTSSDNEFKEYFGNLNR 613


>gi|323146976|gb|ADX32781.1| DNA gyrase B subunit [endophytic bacterium 10(2011)]
 gi|323146996|gb|ADX32791.1| DNA gyrase B subunit [endophytic bacterium 24(2011)]
          Length = 233

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 103/236 (43%), Positives = 150/236 (63%), Gaps = 19/236 (8%)

Query: 45  IYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVIM 100
           ++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE++M
Sbjct: 1   VFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIVM 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL----- 155
           T LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+      
Sbjct: 61  TELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVI 120

Query: 156 -------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
                   +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I
Sbjct: 121 EEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRI 179

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM+
Sbjct: 180 RLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQ 233


>gi|323146980|gb|ADX32783.1| DNA gyrase B subunit [Burkholderia sp. 4682(2011)]
 gi|323146982|gb|ADX32784.1| DNA gyrase B subunit [Burkholderia sp. 4683(2011)]
          Length = 234

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 108/237 (45%), Positives = 153/237 (64%), Gaps = 19/237 (8%)

Query: 45  IYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVIM 100
           ++EVLDN+IDE+L GY D I V ++ D S +V+DNGRG+PT    D   +   SAAE++M
Sbjct: 1   VFEVLDNSIDEALAGYCDDIHVVIHADNSISVTDNGRGVPTGLKRDDKHDPKRSAAEIVM 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD---- 156
           T LHAGGKF+Q SYKVSGGLHGVGVS VNALS WL+L ++R+G  + M F  G++     
Sbjct: 61  TELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTVRRDGKKHFMEFARGVVQNREI 120

Query: 157 --------NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
                   +P+ V G    + GTEV FL    IF   +F+YD L  R+RELSFLN+ V+I
Sbjct: 121 LEEDGVQYSPMPVVGDTE-NRGTEVHFLADQTIFGNVEFHYDILAKRMRELSFLNNGVRI 179

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
            L D+R+ +       + GG++ FV Y+++ K+ L  +     G RDN+++++AM+W
Sbjct: 180 RLTDQRTGKE--DDFAFAGGVKGFVEYINKAKQVLHPNVFHAVGERDNVTVEVAMQW 234


>gi|62085674|gb|AAX63229.1| DNA gyrase subunit B [Gordonia amarae]
          Length = 412

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 174/415 (41%), Positives = 241/415 (58%), Gaps = 38/415 (9%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVG+SVVNALS+ ++L IKR+G  +  +++N      L   G+A   TGT   F P   I
Sbjct: 1   GVGISVVNALSTKVELEIKRDGFQWSQTYLNSEPQT-LHQ-GAASRKTGTTTRFWPDPAI 58

Query: 182 FSVQ-DFNYDTLQHRLRELSFLNSSVQISLI----------------------------- 211
           F+    FN +T+  RL+E++FLN  + I+L                              
Sbjct: 59  FTETTRFNAETVARRLQEMAFLNKGLTITLTDNRPQAVEAPGDPNGDGDTPGGTELAEVV 118

Query: 212 ----DKRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                K + + +  T  Y  G+  ++ +   R K P+ QS I   G      +++AM+WN
Sbjct: 119 QSPAQKATAKSKTRTYHYADGLIDYIKHINKRSKNPIHQSVIGFSGKGTGHEVEIAMQWN 178

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           DGY E++  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG 
Sbjct: 179 DGYSESIHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLIKEKDTKLTGDDIREGL 238

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L+ W E +P EAK I+KK +D++
Sbjct: 239 AAVISVKVSDPQFEGQTKTKLGNTEVKGFVQKICNEHLAHWFESNPAEAKNIIKKAVDSA 298

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AARRARD+ RRK   DI  LPGKLADC   DP   E+++VEGDSAGGSAK GR   
Sbjct: 299 QARAAARRARDMVRRKTATDIGGLPGKLADCRSNDPALCEVYIVEGDSAGGSAKSGRDSM 358

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
            QAILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI+
Sbjct: 359 YQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIV 412


>gi|330896945|gb|AEC48373.1| gyrase B [Streptomyces humidus]
          Length = 392

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 175/394 (44%), Positives = 252/394 (63%), Gaps = 21/394 (5%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ + + +K +G+ +   +  G+   PL     A  +TGT VTF    D
Sbjct: 1   HGVGVSVVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLQR-HEATEETGTSVTFWADGD 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMF 224
           IF   D++++TL  R +E++FLN  ++I+L D+R                  E + ++  
Sbjct: 60  IFETTDYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKHEVKSVSYH 119

Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
           Y+GGI  FV Y   R  + +  + I ++      ++S+++AM+WN GY E V  F N I 
Sbjct: 120 YEGGIVDFVKYLNSRKGEVIHPTVIDLEAEDRERHLSLEVAMQWNGGYTEGVYSFANIIH 179

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  
Sbjct: 180 THEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEG 239

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV++ V+  V + L+ WL+ +P EA  IV+K + A+  R AAR+ARDLTRR
Sbjct: 240 QTKTKLGNTEVKTFVQKVVYEHLADWLDRNPNEAADIVRKGIAAATARVAARKARDLTRR 299

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE
Sbjct: 300 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 359

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           +AR D++L +QEI  +I+A GTG+ +D FDI KL
Sbjct: 360 KARIDRILQNQEIQAMISAFGTGVHED-FDIEKL 392


>gi|148762443|dbj|BAF63923.1| DNA gyrase subunit B [Virgibacillus sp. IVG2-1]
          Length = 325

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 224/328 (68%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SV NALSS L++ + R+ NI+ + F  G+    + V G   + TGT V
Sbjct: 1   YKVFGGLHGVGASVANALSSSLEVYVHRDNNIHFLRFEKGVPQGEIKVIGET-DITGTIV 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P+  IF     +N+DTL  RLREL+FLN  + I++ DKR+ +   ++  Y+GGI ++
Sbjct: 60  HFTPAPTIFDETTEYNFDTLVQRLRELAFLNKGLTITIEDKRTDKEP-VSYCYEGGICSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V ++++ K+ L   P   +G    I++++A+++NDG+  N+  F NNI   +GGTH +G 
Sbjct: 119 VEFINQTKEVLH-EPFYAEGEDQGIAVEIALQYNDGFASNLYSFANNIHTYEGGTHEAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K++  ++ G+D REG T+++S+K P+P+F  QTK KL +SEV
Sbjct: 178 KTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPNPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V +S  ++  S +L E+P  AKIIV+K L AS  RDAA++AR+LTRRKG L++++LPG
Sbjct: 238 RTVTDSVFSELFSKFLFENPTVAKIIVEKGLMASRARDAAKKARELTRRKGALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADC+ +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCASKDASISELYIVEGDSAGGSAK 325


>gi|318066873|emb|CBY89148.1| DNA gyrase subunit B [Halomonas sulfidaeris]
          Length = 349

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 192/352 (54%), Positives = 254/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS+ L+L I R+G ++E  + +G+   PL V G     +GT V F PS + F  
Sbjct: 1   VSVVNALSAELRLTIWRQGEVFEQMYRHGVPQAPLGVVGKTE-KSGTRVHFRPSPETFGN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F++D L  RLRELSFLNS V I L+D+RS +       Y+GG+ AFV +L+ +K  + 
Sbjct: 60  IEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLRAFVDHLNTNKSVIN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+W++ + EN+ C+TNNIPQ+DGG HL+G R+ LTR + +Y+
Sbjct: 118 PVFHFNAVRDDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGAHLAGFRAGLTRTLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  ++   
Sbjct: 178 EAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMSRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP +
Sbjct: 238 SDYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSQ 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|270017276|gb|ACZ58155.1| DNA gyrase subunit B [Gordonia sp. CC-S39-5]
          Length = 418

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 170/413 (41%), Positives = 240/413 (58%), Gaps = 38/413 (9%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  +Y VSGGLHGVG+SVVNALS+ ++L I+ +G  +E ++        L   G+    
Sbjct: 1   FDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGFNWEQTYTYATP-GALEK-GTPTRK 58

Query: 169 TGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS------------ 215
           TGT V F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R             
Sbjct: 59  TGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEPPGDADGD 118

Query: 216 ----------------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
                                  +P+  T  Y  G+  ++ +L+R K+ +  + +   G 
Sbjct: 119 EESGTTEAAEVVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVVGFTGQ 178

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K  
Sbjct: 179 GTGHEVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTLTVNKYAMDKKLIKDK 238

Query: 314 KRS-VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
           K   + GDD REG  +V+S+K+ DP+F  QTK KL ++EV+  V+   ++ L  WLE +P
Sbjct: 239 KEDRLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRVCSEHLGHWLEANP 298

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAK I+KK++++   R AAR ARDL RRK   DI  LPGKLADC   DP K E+++VEG
Sbjct: 299 AEAKTIIKKIVESQRARMAARNARDLVRRKTATDIGGLPGKLADCRSNDPGKCEVYIVEG 358

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           DSAGGSAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI
Sbjct: 359 DSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI 411


>gi|220680181|dbj|BAH10709.1| DNA gyrase subunit B [Nocardia exalbida]
          Length = 398

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 165/401 (41%), Positives = 238/401 (59%), Gaps = 31/401 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I  +G  +  ++ + I    L + G     TGT + F    +IF    +N
Sbjct: 1   NALSSRLEAEIDHDGYHWSQTYKDAIP-GKL-IQGEPTKKTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAEAPKHAEEGTAPAEHKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+ +  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVRHINRTKQAIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKRLIKEKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           E+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI+
Sbjct: 359 EKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIV 398


>gi|330896942|gb|AEC48372.1| gyrase B [Streptomyces drozdowiczii]
          Length = 395

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 168/394 (42%), Positives = 241/394 (61%), Gaps = 23/394 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS+ + + +K +G  +   +  G+   PL     A ++TGT VTF  
Sbjct: 1   GGLHGVGVSVVNALSTRVSVEVKTDGYRWTQDYKFGVPTAPLAR-NEATDETGTSVTFWA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEP 218
             DIF   D++++TL  R +E++FLN  + + L D+R                       
Sbjct: 60  DGDIFETTDYSFETLSRRFQEMAFLNKGLTLRLTDERESAKATVGADSSEASDVPEDETA 119

Query: 219 REITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLC 275
           R +T  Y+ GI  +V Y   R  + +  S I I+       +S+++AM+WN  Y E V  
Sbjct: 120 RTVTYHYENGIVDYVKYLNSRKNEVVHPSVIDIESEDKERLLSVEIAMQWNAQYTEGVYS 179

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F N I   DGGTH  G R+ALT  +  Y       ++   ++ G+D REG T+++S+K+ 
Sbjct: 180 FANAIHTHDGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLAGEDVREGLTAIISVKLG 239

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL ++E ++ V+  V++ LS W + +P EA  I++K + A+  R AAR+A
Sbjct: 240 EPQFEGQTKTKLGNTEAKTFVQKIVHEQLSDWFDRNPNEAADIIRKGIAAATARVAARKA 299

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RDLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+   QAILP+RG
Sbjct: 300 RDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRG 359

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           KILNVE+AR DK+L + E+  LI+A GTG+ +D 
Sbjct: 360 KILNVEKARVDKILQNTEVQALISAFGTGVHEDF 393


>gi|148762375|dbj|BAF63889.1| DNA gyrase subunit B [Halobacillus salinus]
          Length = 325

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 156/328 (47%), Positives = 225/328 (68%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ +   GNIY  SF  G+ D  L V G   + TGT +
Sbjct: 1   YKVCGGLHGVGASVVNALSTKLEVFVHLNGNIYYQSFSRGVPDEDLKVIGET-DITGTRI 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IF+  + + ++TL +RLREL+FLN  + I++ DKR+ E      +Y+GGI ++
Sbjct: 60  QFKPDPEIFTETEEYKFETLANRLRELAFLNRGLTITVDDKRTEEEAVEY-YYEGGIVSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R ++ L   P  ++  +D ISI++A+++NDG+  N+  + NNI   +GGTH SG 
Sbjct: 119 VEHMNRTREALH-EPFFVEDEQDEISIEIALQYNDGFASNIYSYANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K+   ++ GDD REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 178 KTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V ++  ++G S +L E+P  AK IV+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDALFSEGFSKFLFENPSMAKNIVEKGLMASRARMAAKKARELTRRKSALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDAKVSELYIVEGDSAGGSAK 325


>gi|220680508|dbj|BAH10743.1| DNA gyrase subunit B [Nocardia caishijiensis]
          Length = 399

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 162/402 (40%), Positives = 237/402 (58%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I  +G  +   + +      L V G   + TGT + F    +IF    +N
Sbjct: 1   NALSSKLEAEIDNDGYHWTQVYKDSKP-GKL-VQGEPTSRTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I+L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVTESEVTDEVVSETAEAPKHAEDADAPVEHKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLVDFVRHINRTKSAIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKAVSSAQARMAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L + E+ ++ITA GTGI  D FDI KLRY+KII+
Sbjct: 359 EKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYNKIIL 399


>gi|323122046|gb|ADX30637.1| gyrase B [Verrucosispora sediminis]
          Length = 369

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 166/371 (44%), Positives = 237/371 (63%), Gaps = 8/371 (2%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS+ + + I ++G ++   + +      L   G   + TG+ V+F P  
Sbjct: 1   LHGVGVSVVNALSTKMAVEIHKDGFVWRQQYHHSKPTA-LEK-GEPTDRTGSAVSFWPDP 58

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVS 234
           D+F   DF+  T+  RL+E++FL   + I L+D+R       + RE+T  Y GGI  FV 
Sbjct: 59  DVFETVDFDLQTIYRRLQEMAFLTRGLTIHLLDERVAEGEEGKLREVTFKYDGGIADFVR 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+  K P+ ++ I      + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G R+
Sbjct: 119 HLNASKTPIHKTVIEYGAEEEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRA 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S
Sbjct: 179 ALTSVVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKS 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+   ND L  WL+ +P EAKII+ K   A+  R AA++AR L RRK +L+  S+PGKL
Sbjct: 238 FVQRVCNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKL 297

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+
Sbjct: 298 ADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEV 357

Query: 475 GTLITALGTGI 485
             LITALGTGI
Sbjct: 358 QALITALGTGI 368


>gi|148762453|dbj|BAF63928.1| DNA gyrase subunit B [Virgibacillus sp. JM-Vb]
          Length = 324

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 149/327 (45%), Positives = 219/327 (66%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ +  +  I+ + F  G+    + V G   + TGT  
Sbjct: 1   YKVCGGLHGVGASVVNALSTNLEVHVHLDNKIHYLGFKKGVPQGEIEVVGET-DVTGTTT 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F+P  +IF   +++YDTL  RLREL+FLN  + I++ DKR+ E       Y+GGI+++V
Sbjct: 60  HFVPDPEIFDTTEYDYDTLTQRLRELAFLNKGITITVEDKRTDEEPVSYF-YEGGIKSYV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++R K+ L   P   +G    IS+++A+++N+G+  ++  F NNI   +GG+H SG R
Sbjct: 119 EFINRTKEVLH-EPFYAEGEDQGISVEVAIQYNEGFASSLYSFANNIHTYEGGSHESGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           + LTR I  Y  K+   +++  ++ GDD REG T+++S+K PDP+F  QTK KL +SE R
Sbjct: 178 TGLTRVINDYARKNNLYRENDPNLSGDDVREGMTAIVSVKHPDPQFEGQTKTKLGNSEAR 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           ++ +S  ++  S +L E+P  AKIIV K L AS  R AA++AR+LTRRK  L+I++LPGK
Sbjct: 238 TITDSVFSEMFSKFLYENPSVAKIIVDKGLMASRARLAAKKARELTRRKSALEISNLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADCS +D K SEL++VEGDSAGGS K
Sbjct: 298 LADCSSKDAKISELYIVEGDSAGGSTK 324


>gi|220680536|dbj|BAH10757.1| DNA gyrase subunit B [Nocardia jiangxiensis]
          Length = 398

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 166/401 (41%), Positives = 240/401 (59%), Gaps = 30/401 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ ++L I R+G  +  ++I    D   +V G     TG    F P  +IF    FN
Sbjct: 1   NALSTRVELEIDRDGFHWSQNYIEAKPDA--LVKGEPTTRTGNTTRFWPDPEIFETTTFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR---------------------------SPEPREI 221
           ++T   RL+E+ FLN  + I+L D+R                             + +  
Sbjct: 59  FETGARRLQEMGFLNKGLTITLTDERVTDSEVTDEVVSETADAPKHAGDSAPTEHKVKTR 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N I 
Sbjct: 119 TYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANTIN 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F  
Sbjct: 179 THEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGEPQFEG 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L RR
Sbjct: 239 QTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVRR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI+NVE
Sbjct: 299 KSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 KARIDRVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 398


>gi|148762479|dbj|BAF63941.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 327

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 146/328 (44%), Positives = 221/328 (67%), Gaps = 2/328 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L + + R+G ++   F  G+    L V G       T  
Sbjct: 1   YKVCGGLHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGETEVTG-TTT 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI+++
Sbjct: 60  HFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKRDGKERKNEYCYEGGIKSY 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+R ++ + + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH +G 
Sbjct: 120 VEHLNRSREVVHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGF 179

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  ++   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 180 KTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 239

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++LPG
Sbjct: 240 RTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPG 299

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +DP  SEL++VEGDSAGGSAK
Sbjct: 300 KLADCSSKDPTISELYIVEGDSAGGSAK 327


>gi|220680580|dbj|BAH10779.1| DNA gyrase subunit B [Nocardia vaccinii]
          Length = 398

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 164/401 (40%), Positives = 241/401 (60%), Gaps = 30/401 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  I  +G+ +   + +      L + G +   TGT + F P  +IF    FN
Sbjct: 1   NALSTRLQAEIDYDGHHWSQEYKDAKP-GKL-IQGESTKRTGTTIRFWPDPNIFETTLFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR---------------------------SPEPREI 221
           ++T+  RL+E++FLN  + I+L D+R                             + +  
Sbjct: 59  FETVSRRLQEMAFLNKGLTITLTDERVTQSEVTEEVVSEHAEAPKHAEEAAPAEHKVKSR 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T  Y GG+E FV +++R K+P+  + +   G      +++AM+WN GY E+V  F N I 
Sbjct: 119 TYHYPGGLEDFVKHINRTKQPIHNTVVAFTGKGTGHELEVAMQWNSGYSESVHTFANTIN 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F  
Sbjct: 179 THEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVGEPQFEG 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L RR
Sbjct: 239 QTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARELVRR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NVE
Sbjct: 299 KSATDLGGLPGKLADCRSKDPTKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 KARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 398


>gi|164456739|dbj|BAF97862.1| gyrase B subunit [Vibrio vulnificus]
          Length = 284

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 153/286 (53%), Positives = 208/286 (72%), Gaps = 3/286 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALS  + L I R G+ +  ++ +G+ D PL + G   
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTE 60

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+
Sbjct: 61  -KTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFMYE 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           GGI+AFV++L+R+K P+ +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DG
Sbjct: 119 GGIQAFVTHLNRNKTPIHEKVFHFNSEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR + SY++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+
Sbjct: 179 GTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKD 238

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           KLVSSEV+S VESF+ D L+ +L EHP EAK +  K++DA+  R+A
Sbjct: 239 KLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREA 284


>gi|89143192|emb|CAJ57493.1| DNA gyrase subunit B [Microbacterium kitamiense]
          Length = 378

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 158/379 (41%), Positives = 232/379 (61%), Gaps = 21/379 (5%)

Query: 128 VNALSSWLKLRIKREGNIYEMSF-INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALSS L++ +KR+G+++  S+   G+   PL   G    +TGT +TF P   IF    
Sbjct: 1   VNALSSRLEVEVKRQGSVWRQSYATGGVPQAPLAK-GEDSTETGTTITFWPDDTIFETVV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------EPREITMFYKGGIEA 231
           F+YDTL+ R ++++FLN  ++ISL D+R                 +PR  +  Y+ G+  
Sbjct: 60  FDYDTLRTRFQQMAFLNKGLRISLRDERPEGLVDIDGLADADAAPQPRSDSFLYERGLVD 119

Query: 232 FVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           +V +    RH + +    + ++       I+++LAM+W   Y ENV  F N I   +GGT
Sbjct: 120 YVEHLNRVRHAEVVNDEIVEVESEDTERKIALELAMQWTTSYTENVFTFANTINTHEGGT 179

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  +  Y       K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL
Sbjct: 180 HEEGFRAALTTLVNRYARAQNLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++E ++ V+  V D L  W + +P++AK +++K +DA+  R AAR+AR+  RRK V + 
Sbjct: 240 GNTEAKAFVQKVVGDKLGDWFDRNPVQAKNVIRKAIDAASARMAARKARETARRKSVFES 299

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           A++P KL DC+ +DP  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK
Sbjct: 300 AAMPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDK 359

Query: 468 MLSSQEIGTLITALGTGIG 486
            LS++E+  +I A GTGIG
Sbjct: 360 ALSNKEVQAMIQAFGTGIG 378


>gi|182407066|gb|ACB87633.1| DNA gyrase B subunit [Shewanella sp. FB18]
          Length = 348

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 193/351 (54%), Positives = 262/351 (74%), Gaps = 4/351 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L++ I+REG +YE  + +G+ D P+   G A   TGTE+ F PS + F+   F++
Sbjct: 1   ALSEKLQMTIRREGKLYEQFYTHGVPDAPIKAIGDAT-TTGTEIRFWPSGETFTDVKFHF 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  R+RELSFLNS V I L+D+R  +  +    Y+GGI AFV YL+ +K P+ +    
Sbjct: 60  DILAKRVRELSFLNSGVGIRLVDER--DDPDEFFKYEGGISAFVDYLNGNKTPVNKEVFH 117

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR + +Y+++  
Sbjct: 118 FVQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNTYMDREG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L
Sbjct: 178 FNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLGDYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            EHP EAK+IV K+++A+  R+ AR+AR  TRRKG LD++ LPG LADC E+DP   E++
Sbjct: 238 MEHPNEAKLIVGKIINAARARETARKARKRTRRKGPLDLSGLPGNLADCQEKDPALFEIY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +VEGD AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT
Sbjct: 298 IVEGDFAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 348


>gi|220680510|dbj|BAH10744.1| DNA gyrase subunit B [Nocardia cerradoensis]
          Length = 399

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 163/402 (40%), Positives = 238/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS +   I R+G  +   + +      L V G   + TGT   F    D+F    +N
Sbjct: 1   NALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTGTTQRFWADPDVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDK----------------------------RSPEPRE 220
           ++T+  RL+E++FLN  + I+L D+                              P+ + 
Sbjct: 59  FETISRRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETAEAPKHDEGTATPPEPKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+ +  + +          +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 EKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 399


>gi|255019556|ref|ZP_05291647.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756]
 gi|254971015|gb|EET28486.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756]
          Length = 388

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 203/387 (52%), Positives = 273/387 (70%), Gaps = 1/387 (0%)

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDGY E+V  FTNNIPQ DGGTHL+G R+A+TR + +Y+E+   + K K +V   D 
Sbjct: 1   MQWNDGYSESVYPFTNNIPQADGGTHLTGFRAAMTRALGAYIERETANSKSKVAVEAADM 60

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ V+D L+++L+EHP+EA+ IV K+
Sbjct: 61  REGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVEALVSDQLTSFLDEHPVEARAIVGKI 120

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           ++A+  R+AAR+AR++TRRK  LD+A+LPGKLADC ERDP   E++LVEGDSAGGSAKQG
Sbjct: 121 VEAARAREAARKAREITRRKSALDVANLPGKLADCQERDPALCEIYLVEGDSAGGSAKQG 180

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R R+ QAILPL+GKILN ERARFD++LSS E+GTLITALGTGIG D F + KLRYH+III
Sbjct: 181 RDRKFQAILPLKGKILNAERARFDRILSSDEVGTLITALGTGIGADEFRLEKLRYHRIII 240

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDG+HIRTLLLTFFFRQMP+L+ +G +YI +PPL+ I +GK   YV DE +LE +
Sbjct: 241 MTDADVDGSHIRTLLLTFFFRQMPALLEHGHIYIAQPPLFKIAKGKQETYVTDERALEQF 300

Query: 563 -LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                  S +      +   I +      ++     D  +   + +  +  ++ A ++  
Sbjct: 301 LKTEAEKSGKSLEETKAGFTIQRYKGLGEMNPEQLWDTTMNPEHRHLVRITVDDAAMADQ 360

Query: 622 FNCESDQEINVSLASKLANRLNFIAEK 648
                  +      + +    +F A  
Sbjct: 361 TFGLLMGDAVAPRRAYIEENAHFAALD 387



 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 10/110 (9%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRK----------GISMQRYKGLGEMNASQLWE 752
            +  +     +  +T   +L   + +   K          G ++QRYKGLGEMN  QLW+
Sbjct: 278 PLFKIAKGKQETYVTDERALEQFLKTEAEKSGKSLEETKAGFTIQRYKGLGEMNPEQLWD 337

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802
           TT+NP+ R L+R+ + DA+ AD  F  LMGD V PRR +I+EN+  +ALD
Sbjct: 338 TTMNPEHRHLVRITVDDAAMADQTFGLLMGDAVAPRRAYIEENAHFAALD 387


>gi|238767796|dbj|BAH66659.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768342|dbj|BAH66734.1| DNA gyrase subunit beta [Aeromonas sp. KC2]
 gi|238768344|dbj|BAH66735.1| DNA gyrase subunit beta [Aeromonas sp. KC3]
          Length = 339

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 194/340 (57%), Positives = 255/340 (75%), Gaps = 2/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAK 61

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +
Sbjct: 62  RLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 119

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K
Sbjct: 120 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAK 179

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +
Sbjct: 180 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGD 239

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 240 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 299

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 300 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 339


>gi|220680514|dbj|BAH10746.1| DNA gyrase subunit B [Nocardia crassostreae]
          Length = 399

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 164/402 (40%), Positives = 233/402 (57%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +  +G  +   + +      L   G     TGT + F P  +IF    FN
Sbjct: 1   NALSTRLEAEVDHDGYHWTQEYKDSKP-GKL-FQGQPTKRTGTTIRFWPDPEIFETTTFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  E                               
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSEGDVTDEVVSETAEAPKHAEEGAEAAPPKVKT 118

Query: 223 --MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y GG+E FV +++R K P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVKHINRTKTPIHNSIVSFSGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ DP+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTGVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKIADPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +++V+  V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTDVKGFVQRTCNEHLTHWFEANPADAKTIVTKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+  +ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 EKARIDKVLKNNEVQAIITAFGTGI-HDEFDIAKLRYHKIVL 399


>gi|108946656|gb|ABG23676.1| gyrase subunit B [Leptospira noguchii]
 gi|108946658|gb|ABG23677.1| gyrase subunit B [Leptospira noguchii]
 gi|108946662|gb|ABG23679.1| gyrase subunit B [Leptospira noguchii]
 gi|108946664|gb|ABG23680.1| gyrase subunit B [Leptospira noguchii]
          Length = 137

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/138 (55%), Positives = 103/138 (74%), Gaps = 1/138 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIIISILPDNIIEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFINGI 154
           + + ++G IY   +  G+
Sbjct: 120 VEVHQKGKIYTQKYQKGV 137


>gi|295979573|dbj|BAJ07459.1| DNA gyrase subunit B [Ralstonia sp. 2S2]
 gi|295979575|dbj|BAJ07460.1| DNA gyrase subunit B [Ralstonia sp. 3B1]
          Length = 277

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 128/279 (45%), Positives = 178/279 (63%), Gaps = 24/279 (8%)

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           L G+   I VT++ D S +++DNGRGIP     D   E   SAAE+ MT LHAGGKFNQ 
Sbjct: 1   LAGWCTEIQVTIHSDNSISITDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQN 60

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-----------------IL 155
           SYKVSGGLHGVGVS VNALS WL+L ++R+G  + + F  G                 + 
Sbjct: 61  SYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQAHLLEFAQGAVQNRLVETVNGPDGQPVE 120

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
            +P+ + G   +  GTEV FL   +IF+  +F+Y+ L  R+RELSFLN+ V I L D+R+
Sbjct: 121 VSPMKIIGPT-DKRGTEVHFLADEEIFTHVEFHYEILSKRIRELSFLNNGVHIRLTDQRT 179

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            +       + GG++ FV Y++R K  L  +       +D I+++++M+WNDGY+E VLC
Sbjct: 180 GKE--EDFAFSGGVKGFVEYINRGKSTLHPNIFYANTEKDGIAVEVSMQWNDGYNEQVLC 237

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           FTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K
Sbjct: 238 FTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAK 276


>gi|238767798|dbj|BAH66660.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 339

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 194/340 (57%), Positives = 255/340 (75%), Gaps = 2/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAK 61

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +
Sbjct: 62  RLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 119

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K
Sbjct: 120 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAK 179

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +
Sbjct: 180 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGD 239

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 240 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 299

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 300 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 339


>gi|296313258|gb|ACZ97546.2| DNA gyrase subunit B [Lactobacillus reuteri]
          Length = 364

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 172/350 (49%), Positives = 241/350 (68%), Gaps = 3/350 (0%)

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             L   PI ++G  ++I++++++++ D Y  N+L FTNNI   +GGTH +G + ALTR I
Sbjct: 1   NVLFDPPIYVEGKENDITVEVSLQYTDSYRSNLLTFTNNIHTYEGGTHETGFKMALTRVI 60

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  K+   K ++ ++ GDD REG T+V+SIK PDP+F  QTK KL +S+ R+  +   
Sbjct: 61  NDYGHKAGILKNNE-TLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDARTATDHVF 119

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
               + +L EHP EA+ I++K   AS  R AA+RAR++TR+K  L+I++LPGKLAD + +
Sbjct: 120 AATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNLPGKLADNTSK 179

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP+ SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++ EI +L TA
Sbjct: 180 DPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLANDEIRSLFTA 239

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
           LGTG G D FDI K  YHK+IIMTDADVDGAHIRTLLLT F+R M  +I +G++YI +PP
Sbjct: 240 LGTGFG-DDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMITHGYVYIAQPP 298

Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589
           LY + +GK ++Y+  +E LE  + +   S + +       G +    L  
Sbjct: 299 LYQVRQGKFVKYIDSDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 348



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/33 (69%), Positives = 29/33 (87%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
           +QRYKGLGEM+A QLWETT++P+ R LLRVK+ 
Sbjct: 332 IQRYKGLGEMDAEQLWETTMDPENRHLLRVKLD 364


>gi|188039939|gb|ACD47144.1| DNA gyrase subunit B [Acinetobacter sp. HY-7]
          Length = 314

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 174/317 (54%), Positives = 220/317 (69%), Gaps = 3/317 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALSS L+L I R G I+   + +G    PL V G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSSKLELTIYRAGQIHHQEYRHGDPQYPLKVIGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             +TGT V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y
Sbjct: 61  T-NTGTIVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIILRDERVA--FEHVYDY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV Y+++ K  L         + + I +++A++WND Y ENV CFTNNIPQKDG
Sbjct: 118 EGGLSEFVKYINQGKTHLNDIFHFTTQADNGIGVEVALQWNDTYQENVRCFTNNIPQKDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKE
Sbjct: 178 GTHLAGFRAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKE 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSEV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  L
Sbjct: 238 KLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSAL 297

Query: 406 DIASLPGKLADCSERDP 422
           DIA LPGKLADC E+DP
Sbjct: 298 DIAGLPGKLADCQEKDP 314


>gi|37956527|gb|AAP15349.1| gyrase B [Geobacter thiogenes]
          Length = 309

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 147/305 (48%), Positives = 210/305 (68%), Gaps = 2/305 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS WL L I+R+G I+  ++  G    PL VTG+    
Sbjct: 2   FDNHSYKVSGGLHGVGVSVVNALSKWLDLEIRRDGKIWRQTYHRGEPQAPLEVTGNT-RR 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GT+VTF+P  +IF   ++++D L  RLREL+FLN+ V+I + D+R  + +    FY+GG
Sbjct: 61  RGTKVTFMPDEEIFETTEYSFDILSQRLRELAFLNAGVRIKINDER-ADGKSHDFFYEGG 119

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I +FV YL+R K  L Q PI  +G +  + ++++M++ND Y E +  F NNI   +GGTH
Sbjct: 120 INSFVEYLNRAKTALHQKPIYFKGEKGGVEMEVSMQYNDTYDEKIFSFANNINTHEGGTH 179

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G ++ALTR + +Y   +  +K  K ++ GDD REG T V+S+K+P P+F  QTK KL 
Sbjct: 180 LAGFKAALTRTMNTYAAGNNLTKNAKVAISGDDLREGMTCVISVKIPQPQFEGQTKTKLG 239

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEV+  VES +N+ L+ +LEE+P  AK I++K ++A+  R+AAR+ARDLTRRKG LD+ 
Sbjct: 240 NSEVKGYVESLLNEKLAVYLEENPQVAKRILEKSIEAARAREAARKARDLTRRKGALDLG 299

Query: 409 SLPGK 413
            LPG 
Sbjct: 300 GLPGN 304


>gi|106895912|gb|ABE96851.1| DNA gyrase subunit B [Aeromonas sp. MDC64]
          Length = 337

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 193/339 (56%), Positives = 252/339 (74%), Gaps = 2/339 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRL 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R          Y+GGI+AFV YL+++K P+          +D 
Sbjct: 61  RELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 119 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + LS +L E+P +AK
Sbjct: 179 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEFLLENPSDAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 239 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 298

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+G
Sbjct: 299 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 337


>gi|220680572|dbj|BAH10775.1| DNA gyrase subunit B [Nocardia testacea]
          Length = 400

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 166/403 (41%), Positives = 239/403 (59%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  +  +G  +  ++ + +    L V G     TGT + F     +F    +N
Sbjct: 1   NALSSRLEAEVDTDGYHWSQTYKDAVP-GHL-VQGEPTKATGTTIRFWADPAVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I L D R                              P+ +
Sbjct: 59  FETVSRRLQEMAFLNKGLTIVLTDLRVSDTEITDEVVSDTAEAPKHDDGGEKPAAEPKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLEDFVRHINRTKQPIHNSVVSFNGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR DK+L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 VEKARIDKVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 400


>gi|220680566|dbj|BAH10772.1| DNA gyrase subunit B [Nocardia sienata]
          Length = 400

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 166/403 (41%), Positives = 240/403 (59%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  +  +G  +  ++ + +    L V G     TGT + F     +F    +N
Sbjct: 1   NALSSRLEAEVDTDGYHWSQTYKDAVP-GQL-VQGEPTKATGTTIRFWADPAVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I L D+R                              P+ +
Sbjct: 59  FETVSRRLQEMAFLNKGLTIVLTDERVSDIEITDEVVSDTAEAPKHDDNGEKPAAEPKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLEDFVRHINRTKQPIHNSVVSFNGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR DK+L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 VEKARIDKVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 400


>gi|220680562|dbj|BAH10770.1| DNA gyrase subunit B [Nocardia seriolae]
          Length = 399

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 166/402 (41%), Positives = 239/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +  +G  +   + +      L V G     TGT + F P  +IF    F+
Sbjct: 1   NALSTRLQADVDTDGFHWTQEYKDSKP-GKL-VQGGPTKRTGTTIKFWPDPEIFETTTFS 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  E   I                           
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDQRVAEGDVIDEVVSETAEAPKHLDENAAVAAPKIKT 118

Query: 223 --MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y GG+E FV +++R K P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVKHINRTKTPIHNSIVAFTGKGTGHEVEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+ + ++ GDD REG  +++S+K+ DP+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIREGLAAIVSVKIADPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ +S W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 EKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 399


>gi|307704603|ref|ZP_07641506.1| DNA gyrase subunit B [Streptococcus mitis SK597]
 gi|307621848|gb|EFO00882.1| DNA gyrase subunit B [Streptococcus mitis SK597]
          Length = 430

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 174/406 (42%), Positives = 263/406 (64%), Gaps = 3/406 (0%)

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
             +     Y+GGI ++V Y++ +K  +   PI   G  D+I++++AM++  GYHENV+ F
Sbjct: 1   MEQTKHYHYEGGIASYVEYINENKDVIFDIPIYTDGEMDDITVEVAMQYTTGYHENVMSF 60

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            NNI   +GGTH  G R+ALTR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+
Sbjct: 61  ANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPN 120

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SEV  +     +D  S +L E+P  AK IV+K + A+  R AA+RAR
Sbjct: 121 PQFEGQTKTKLGNSEVVKITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAR 180

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TR+K  L+I++LPGKLADCS  +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGK
Sbjct: 181 EVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGK 240

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+A  DK+L+++EI +L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTL
Sbjct: 241 ILNVEKASMDKILANEEIRSLFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTL 299

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           LLT  +R M  ++  G++YI +PP+YG+  G  ++      + ++  + ++L+   E   
Sbjct: 300 LLTLIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALTRHSEGRA 359

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
             K  I +      +DD    +  +   +    +  ++ A  +   
Sbjct: 360 --KPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEADKI 403



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758
           +    I   I  G   +I      L    S GR   ++QRYKGLGEM+  QLWETT++P+
Sbjct: 328 KVGSEIKEYIQPGADQEIK-LQEALTR-HSEGRAKPTIQRYKGLGEMDDHQLWETTMDPE 385

Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
            R + RV + DA++AD +F  LMGD VEPRREFI+EN++ S LD+
Sbjct: 386 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 430


>gi|159576555|dbj|BAF92826.1| DNA gyrase subunit B [Halomonas sp. CA3-1I]
          Length = 324

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 180/327 (55%), Positives = 233/327 (71%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  LKL I R G ++E  + +G+  +PL + G     +G+ V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEELKLTIWRAGQVHEQIYHHGVPASPLSIVGKTE-KSGSRV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS + F+  +F+YD L  RLRELSFLNS V I L+D+RS +       Y GG++AFV
Sbjct: 60  HFRPSPETFANIEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYDGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K  L           D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R
Sbjct: 118 DHLNTNKTVLNPVFHFSVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR + +Y+E     KK K S  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+
Sbjct: 178 ASLTRSLNNYIEAEGLLKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP  SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|207678283|gb|ACI25155.1| DNA gyrase B [Phaeobacter sp. M8-4.1]
 gi|207678285|gb|ACI25156.1| DNA gyrase B [Phaeobacter sp. M8-4.3]
          Length = 343

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 206/342 (60%), Positives = 263/342 (76%)

Query: 136 KLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHR 195
           +LRI R+G  +   F  G     L V G  G+ TGTEV FL S+D FS  +++++TL+ R
Sbjct: 1   ELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNLEYSFETLEKR 60

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LREL+FLNS V+I LID+R  E  E+ +FY+GG++ FV YLDR K P+M++PI I G +D
Sbjct: 61  LRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPIYITGDKD 120

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           +I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S  +KK+K 
Sbjct: 121 DIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKKEKV 180

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ L+ W EE+P +A
Sbjct: 181 SFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAEWFEENPNQA 240

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+FLVEGDSA
Sbjct: 241 KQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVFLVEGDSA 300

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           GGSA+ GR R  QAILPLRGKILNVERARFD+ML SQEIG L
Sbjct: 301 GGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNL 342


>gi|220680532|dbj|BAH10755.1| DNA gyrase subunit B [Nocardia ignorata]
          Length = 399

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 162/402 (40%), Positives = 236/402 (58%), Gaps = 32/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I  +G  +   + +      L V G   + TGT + F    +IF    +N
Sbjct: 1   NALSSKLEAEIDNDGYHWTQVYKDSKP-GKL-VQGEPTDRTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I+L D+R                               + +
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSDSEVTDEVVSETAEAPKHADEVAAQAVEHKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLVDFVRHINRTKSAIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVGEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKAVSSAQARMAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           VE+AR D++L + E+ ++ITA GTGI  D FDI KLRY+KII
Sbjct: 359 VEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYNKII 399


>gi|210062268|gb|ACJ06183.1| GyrB [Aeromonas veronii bv. sobria]
          Length = 338

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 197/341 (57%), Positives = 253/341 (74%), Gaps = 3/341 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYE 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+       
Sbjct: 60  ILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
              +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   S
Sbjct: 118 TTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYS 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E
Sbjct: 178 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 297

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           EGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SS
Sbjct: 298 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 338


>gi|220680526|dbj|BAH10752.1| DNA gyrase subunit B [Nocardia flavorosea]
          Length = 400

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 165/403 (40%), Positives = 239/403 (59%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I  +G  +  ++ + +    L V G A   TGT + F     +F    +N
Sbjct: 1   NALSSRLEAEIDTDGYHWSQTYKDAVP-GQL-VQGDATKATGTTIRFWADPAVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I L D+R                               + +
Sbjct: 59  FETVSRRLQEMAFLNKGLTIVLTDERVSATEVTDEVVSETAEAPKHDEGGEKPALEHKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+E FV +++R K+P+  S +   G      +++A++WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLEDFVRHINRTKQPIHNSVVGFNGKGPGHELEVALQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNKAVSSAQARLAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   DI  LPGKLADC  +DP KS++++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDIGGLPGKLADCRSKDPSKSDIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR DK+L + E+  +ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 VEKARIDKVLKNAEVQAIITAFGTGI-HDEFDIAKLRYHKIVL 400


>gi|148762483|dbj|BAF63943.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 327

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 146/328 (44%), Positives = 221/328 (67%), Gaps = 2/328 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L + + R+G ++   F  G+    L V G       T  
Sbjct: 1   YKVFGGLHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGETEVTG-TTT 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI+++
Sbjct: 60  HFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKRDGKERKNEYCYEGGIKSY 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L+R ++ + + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH +G 
Sbjct: 120 VEHLNRSREVVHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGF 179

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  ++   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +SE 
Sbjct: 180 KTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 239

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R++ ++  ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++LPG
Sbjct: 240 RTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPG 299

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +DP  SEL++VEGDSAGGSAK
Sbjct: 300 KLADCSSKDPTISELYIVEGDSAGGSAK 327


>gi|155371498|ref|YP_001427032.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124818|gb|ABT16685.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 1058

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 149/699 (21%), Positives = 250/699 (35%), Gaps = 77/699 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE-------SG-------------LHHMIYEVLDN 51
           A     L   D V +RP  Y+G    E       +G                +  E+L N
Sbjct: 2   ASRYIKLSQRDHVLQRPDTYVGSVAKEAREEYVYTGDAIVKKSVSYSPAFLKIFDEILTN 61

Query: 52  AIDESLEGY-ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           + D    G     + VT++ D   T+ ++G  IP + H EEG    E+I   L  G  F+
Sbjct: 62  SADCFNRGAPMTTLKVTIDADH-VTIYNDGCSIPVEKH-EEGCYVPELIFGHLLTGENFD 119

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
               +   G +G G  + N  S    + I      Y  ++ + + +        +     
Sbjct: 120 DAQERTGAGRNGYGSKLTNIFSKKFDVEIYDGTRKYLQTWSDNMTNASKPKVTKSSKPGS 179

Query: 171 TEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
              TF P  + F +   + DT   L  R+ +++ + + V+I L                 
Sbjct: 180 ITTTFYPDFERFGMDSIDEDTRSVLVRRVYDMAAVLTKVKIFL----------------D 223

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G    V     + +   ++    +        D+ +  +D +         N     GGT
Sbjct: 224 GKRLDVKGAKDYFEMYTEAKPVFESVD---GWDIGVCPSDEFRSVSFV---NASSTRGGT 277

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H+  + +A+ +        +  + K K +V     +      ++ ++ +P FSSQTK+ L
Sbjct: 278 HVDLIANAVAK------AVAEAALKKKVTVKPAVVKNKLFIFVNARVVNPSFSSQTKDIL 331

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            S  V+    +       + + +  +    + + +++   ++      +        L  
Sbjct: 332 TSKNVKCSPSAAFLKKAVSAVLDDVIAETNVRESLVEMKNLKKTDGAKKVRLTGIKKLTD 391

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ-----GRSRENQAILPLRGKILNVER 462
           A+  G       +      L L EGDSA   A       GR R    I PLRGK+LNV  
Sbjct: 392 AAWAG------TKHSGMCTLILTEGDSAATLATAGLAVVGRDR--YGIFPLRGKLLNVRD 443

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
           A    + ++ EI  +   LG   G +  D + LRY  +IIM D DVDG+HI  L+L FF 
Sbjct: 444 ASVSSITNNAEITAIKQILGLRNGVNYKDASSLRYGSVIIMADQDVDGSHIAGLVLNFFH 503

Query: 523 RQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
            Q PSL+   GFL     P+    +G  +         E++                K  
Sbjct: 504 AQFPSLLEIPGFLKRFVTPIVVAKKGTKMVEFYSIPDFEEW------KAATSDVSTWKTK 557

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS-KLAN 640
             K    +  +DA +    +K        +      I   FN     E    L   +  N
Sbjct: 558 YYKGLGTSDANDAKRYFNNLKALVKTLTWSDNAAESIDKSFNKSRADERKTWLLDFEPGN 617

Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
           +L+    K        IN   IL  R         V++G
Sbjct: 618 QLDQKLTKIPVE--DFINKDLILFSRYDVERSIPSVVDG 654


>gi|323146972|gb|ADX32779.1| DNA gyrase B subunit [endophytic bacterium 13(2011)]
 gi|323146974|gb|ADX32780.1| DNA gyrase B subunit [endophytic bacterium 14(2011)]
 gi|323146994|gb|ADX32790.1| DNA gyrase B subunit [endophytic bacterium 23(2011)]
          Length = 232

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/235 (43%), Positives = 149/235 (63%), Gaps = 19/235 (8%)

Query: 45  IYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVIM 100
           ++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE++M
Sbjct: 1   VFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIVM 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL----- 155
           T LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+      
Sbjct: 61  TELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVI 120

Query: 156 -------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
                   +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I
Sbjct: 121 EEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRI 179

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
            L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM
Sbjct: 180 RLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAM 232


>gi|309807642|ref|ZP_07701584.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169108|gb|EFO71184.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 01V1-a]
          Length = 158

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/161 (53%), Positives = 117/161 (72%), Gaps = 5/161 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++   N++YD  SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ GY
Sbjct: 1   MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGY 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT++ D S +V D GRG+PT +H   G+   EVI+T LHAGGKF +K+Y+ SGGL
Sbjct: 58  GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLV 160
           HGVG SVVNALS WLK+R+ R+G  +E  F++ G     L 
Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLK 157


>gi|220680500|dbj|BAH10739.1| DNA gyrase subunit B [Nocardia asteroides]
          Length = 400

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 164/403 (40%), Positives = 237/403 (58%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I  +G  +   + +      L V G A   TGT + F    +IF    +N
Sbjct: 1   NALSSKLEAEIDNDGYHWTQVYKDAKP-GKL-VQGEATQRTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  E   I                           
Sbjct: 59  FETVSRRLQEMAFLNKGLTITLTDQRVSESDVIDEVVSDTAEAPKHAEEGVEKPVEHKVK 118

Query: 223 ---MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y GG+  FV +++R K+ +  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVGEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR D++L + E+ ++ITA GTGI  D FDI KLRY+KII+
Sbjct: 359 VEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYNKIIL 400


>gi|148762409|dbj|BAF63906.1| DNA gyrase subunit B [Virgibacillus marismortui]
          Length = 322

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 147/325 (45%), Positives = 217/325 (66%), Gaps = 3/325 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ +  +  I+ + F  G+    + V G   + TGT  
Sbjct: 1   YKVCGGLHGVGASVVNALSTNLEVHVHLDNKIHYLGFKKGVPQGEIEVVGET-DVTGTTT 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F+P  +IF   +++YDTL  RLREL+FLN  + I++ DKR+ E       Y+GGI+++V
Sbjct: 60  HFVPDPEIFDTTEYDYDTLTQRLRELAFLNKGITITVEDKRTDEEPVSYF-YEGGIKSYV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +++R K+ L   P   +G    IS+++A+++N+G+  ++  F NNI   +GG+H SG R
Sbjct: 119 EFINRTKEVLH-EPFYAEGEDQGISVEVAIQYNEGFASSLYSFANNIHTYEGGSHESGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           + LTR I  Y  K+   +++  ++ GDD REG T+++S+K PDP+F  QTK KL +SE R
Sbjct: 178 TGLTRVINDYARKNNLYRENDPNLSGDDVREGMTAIVSVKHPDPQFEGQTKTKLGNSEAR 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           ++ +S  ++  S +L E+P  AKII  K L AS  R AA++AR+LTRRK  L+I++LPGK
Sbjct: 238 TITDSVFSEMFSKFLYENPSVAKIIADKGLMASRARLAAKKARELTRRKSALEISNLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGS 438
           LADCS +D K SEL++VEGDSAGGS
Sbjct: 298 LADCSSKDAKISELYIVEGDSAGGS 322


>gi|165968984|gb|ABY76048.1| topoisomerase IV subunit ParE [Parachlamydia acanthamoebae]
          Length = 459

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 147/500 (29%), Positives = 226/500 (45%), Gaps = 49/500 (9%)

Query: 76  VSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGKFNQKSYKVSGGLHGVGVSVVNALSS 133
           V D GRGIP             VI     ++ G K+N   ++ S GL+GVG   VNALSS
Sbjct: 1   VRDFGRGIPLGK----------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVNALSS 50

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
              +R  REG   E  F  G L      +       GT V F+P  +IF    F  + +Q
Sbjct: 51  HFLVRSHREGKSMEAVFSQGKLI--REKSQKTSEPDGTYVEFIPDKEIFKKYRFEPEYIQ 108

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RL   ++LN+ + +    +          + + G+   ++      +  +  P+  +G 
Sbjct: 109 KRLWHYAYLNTGLILEYNGQDI--------YSENGLLDLLNEEVT--EDRLYEPLYYRGK 158

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                ++ A      Y E+   F N     DGGTHLS  R  + + +  Y +K+      
Sbjct: 159 ----LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVNEYSKKN------ 208

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
                G D REG    +++++ DP F SQTK KL ++E+R  +   V D +   L ++P 
Sbjct: 209 ---FQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDAVVNMLYKNPS 265

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP------KKSEL 427
            A  I+++++           A     ++    I+    KL DC           +K+ +
Sbjct: 266 TANSIIERIVFNEK-LRKELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDKADVGEKTMI 324

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FL EGDSA  S    R    QA+  LRGK LNV   + D++  ++E+  L++AL      
Sbjct: 325 FLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNI---- 380

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
              DI  LRY K+I+ TDADVDG HIR LL+TFF      L+ NG L+I++ PL+ +   
Sbjct: 381 -EDDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVRNR 439

Query: 548 KSLQYVKDEESLEDYLINQS 567
           +   Y   EE  +  +    
Sbjct: 440 EKTLYCYSEEERDKAIKQLK 459


>gi|156536678|gb|ABU80443.1| gyrase B [Photorhabdus temperata subsp. thracensis]
          Length = 342

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 193/344 (56%), Positives = 257/344 (74%), Gaps = 4/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185
              ALS  L+L I+R+G ++E ++  G+  NPL V G     TGT V F PS D F    
Sbjct: 2   CCYALSEKLELIIRRDGQVHEQTYHLGVPQNPLKVVGETE-QTGTRVRFWPSMDTFRDNT 60

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F +D L  RLRELSFLNS V I L+DKR+    E    Y+GGI+AFV +L+++K P+  
Sbjct: 61  EFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHP 118

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 119 NVFYFSTEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 178

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 179 KEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 238

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 239 EYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 298

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 342


>gi|220680544|dbj|BAH10761.1| DNA gyrase subunit B [Nocardia niigatensis]
          Length = 399

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 167/402 (41%), Positives = 240/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +   G+ +   + +      L + G A   TGT + F P  DIF    F+
Sbjct: 1   NALSTRLEAEVDYGGHHWTQEYKDAKP-GKL-IQGEATKKTGTTIRFFPDPDIFETTTFS 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  E                               
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDQRIHEGDITDEVVSETAEAPKHLDENAPAAEPKVKT 118

Query: 223 --MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y GG+E +V +++R K P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDYVRHINRTKTPIHNSIVGFTGKGTGHEVEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+ + ++ GDD REG  +++S+K+ DP+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIREGLAAIVSVKIADPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ +S W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L + E+ ++ITA GTGI  D FDINKLRYHKI++
Sbjct: 359 EKARIDRVLKNTEVQSIITAFGTGI-HDEFDINKLRYHKIVL 399


>gi|318066877|emb|CBY89150.1| DNA gyrase subunit B [Halomonas variabilis]
          Length = 349

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 192/352 (54%), Positives = 255/352 (72%), Gaps = 3/352 (0%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS+ L+L I R+G ++E  + +G+   PL V G     +GT V F PS + F  
Sbjct: 1   VSVVNALSAELRLTIWRQGEVFEQMYHHGVPQAPLGVVGKTE-KSGTRVHFRPSPETFGN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F++D L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+ +K  + 
Sbjct: 60  IEFHFDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFVDHLNTNKSVIN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D + +++AM+W++ + EN+ C+TNNIPQ+DGG HL+G RS LTR + +Y+
Sbjct: 118 PVFHFNAIREDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGAHLAGFRSGLTRTLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V+  ++   
Sbjct: 178 EAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVDQEMSRLF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
           S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP +
Sbjct: 238 SEYLVEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSQ 297

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS E+GT
Sbjct: 298 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGT 349


>gi|148762387|dbj|BAF63895.1| DNA gyrase subunit B [Halobacillus sp. RG-Hb]
          Length = 324

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 181/327 (55%), Positives = 243/327 (74%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALSS L L I+R+G +YE ++ +G+ D PL   G     +GT+V
Sbjct: 1   YKVCGGLHGVGVSVVNALSSTLTLTIRRDGKVYEQTYTHGVPDAPLGPVGETE-ASGTKV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F+PS + F+  +F+YD L  RLREL+FLNS V+I L D+RS   RE    Y+GG+ AFV
Sbjct: 60  HFIPSPETFTHIEFHYDILAKRLRELAFLNSGVRIRLTDERSG--REEVFEYEGGLRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K P+ +     +   D IS+++AM+WND + EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 118 EHLNTNKTPINRVFHFNREREDGISVEVAMQWNDAFQENLYCFTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + +Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AALTRSLNNYIEHEGLGKKAKVATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    + +L+E P EAK+IV K+++A+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQELYQSFADYLQEQPNEAKLIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 298 LADCQEKDPALSELYIVEGDSAGGSAK 324


>gi|159576588|dbj|BAF92841.1| DNA gyrase subunit B [Halomonas sp. SA-Hm1]
          Length = 324

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 182/327 (55%), Positives = 234/327 (71%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALS  LKL I R G++YE ++ +G+   PL V G     +GT V
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELKLTIWRSGDVYEQTYQHGVPQAPLAVVGQTE-KSGTRV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS + F+  +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV
Sbjct: 60  HFRPSQETFTHIEFHYDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K  L           D + +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R
Sbjct: 118 DHLNTNKTSLNPVFHFNVERDDGVGVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + +Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+
Sbjct: 178 AALTRSLNNYIEAEGLLKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRQFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP  SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|195926976|dbj|BAG68375.1| gyrase B [Campylobacter lari]
          Length = 339

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 154/344 (44%), Positives = 221/344 (64%), Gaps = 5/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   + R+G IY   F  G + +     G     TGT + F P   IF + +
Sbjct: 1   VVNALSKKLVATVHRDGEIYRQEFSEGKVTSDFETIG-TSKKTGTIIEFWPDDQIFEITN 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +  
Sbjct: 60  FDYEILAKRFRELAYLNPKITINFKDNRIGKA--ESFHFEGGISQFVT--DLNKKQALTK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 116 AIFFNVDEEDVNVEVALLYNDSYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL SS VR +V     + L+ 
Sbjct: 176 NASAREKDSKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSKASFEYLTK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K    + +LPGKLADC  +DP +SE
Sbjct: 236 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKETSSVGTLPGKLADCQSKDPSESE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L 
Sbjct: 296 IYLVEGDSAGGSAKQGRERTFQAILPLRGKILNVEKARLDKILK 339


>gi|207678272|gb|ACI25150.1| DNA gyrase B [Phaeobacter sp. M4-3.2]
          Length = 343

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 205/342 (59%), Positives = 262/342 (76%)

Query: 136 KLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHR 195
           +LRI R+G  +   F  G     L V G  G+ TGTEV FL S+D FS  +++++TL+ R
Sbjct: 1   ELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNLEYSFETLEKR 60

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LREL+FLNS V+I LID+R  E  E+ +FY+GG++ FV YLDR K P+M++PI I G +D
Sbjct: 61  LRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPIYITGDKD 120

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           +I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S  +KK+K 
Sbjct: 121 DIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKKEKV 180

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ L+ W EE+P +A
Sbjct: 181 SFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAEWFEENPNQA 240

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+FLVEGDSA
Sbjct: 241 KQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVFLVEGDSA 300

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           GGSA+ GR R  QAILPLRGKILNVE ARFD+ML SQEIG L
Sbjct: 301 GGSAQTGRDRMTQAILPLRGKILNVEPARFDRMLGSQEIGNL 342


>gi|261488478|emb|CAU94914.1| DNA gyrase subunit B [Kinneretia asaccharophila]
          Length = 336

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 170/340 (50%), Positives = 236/340 (69%), Gaps = 22/340 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS +L+L ++R+G +
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKYLRLTVRRDGKV 59

Query: 146 YEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTL 192
           +++ F  G+              +P+ V G   +  GTEV FLP ++IF   + F+Y+ L
Sbjct: 60  HQIEFKKGVPQDRVLQMRDGFEVSPMRVIGDT-DKRGTEVHFLPDTEIFQQNNEFHYEIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I L+D+R+ +       Y GG++ FV ++++ K  L  +     G
Sbjct: 119 AKRLRELSFLNNGVKIRLVDERNNKE--DNFAYAGGVKGFVEFINKGKTTLHPNIFHAVG 176

Query: 253 SR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +      NI ++++M+WNDG++ENV CFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 EKVSEQGTNIGVEVSMQWNDGFNENVFCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR+ VE  V+  L+ +
Sbjct: 237 ELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEEIVSRLLTDY 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           L E+PL+AK I  K+LDA+  R+AAR+AR++TRRKGVLD 
Sbjct: 297 LLENPLDAKTICGKILDAARAREAARKAREMTRRKGVLDG 336


>gi|93277220|gb|ABF06428.1| gyrase B [Amycolatopsis sp. C16]
          Length = 377

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 161/378 (42%), Positives = 235/378 (62%), Gaps = 20/378 (5%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALSS + + ++ +G+ +   +  G+   PL     A   TGT VTF    +IF   
Sbjct: 1   SVVNALSSKVSVEVRTDGHRWTQDYKMGVPTAPLAK-HEAIERTGTSVTFWADPEIFETT 59

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGI 229
           +++++TL  R +E++FLN  + + L D+R                  E + +T  Y+GGI
Sbjct: 60  EYSFETLSRRFQEMAFLNKGLTLRLTDERESAKATSGADEAGADEKAEVKSVTYHYEGGI 119

Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
             FV Y   R    +  + I ++    +  +S+++AM+WN GY E V  F N I   +GG
Sbjct: 120 VDFVKYLNSRKGDVVHPTVIDLEAEDKDKSLSLEVAMQWNSGYSEGVYSFANIIHTHEGG 179

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  QTK K
Sbjct: 180 THEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++E ++ V+  V + L+ WL+ +P+EA  I++K + A+  R AAR+ARDLTRRKG+L+
Sbjct: 240 LGNTEAKTFVQRAVYEHLNDWLDRNPVEAADIIRKGIQAATARVAARKARDLTRRKGLLE 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D
Sbjct: 300 SASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARID 359

Query: 467 KMLSSQEIGTLITALGTG 484
           K+L +QEI  LI+A GTG
Sbjct: 360 KILQNQEIQALISAFGTG 377


>gi|330367269|dbj|BAK19429.1| DNA gyrase subunit B [Helicobacter fennelliae]
          Length = 351

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 155/356 (43%), Positives = 231/356 (64%), Gaps = 5/356 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L + IK+ G IY   F  GI  + L + G   N+ GT + F P  +I  V DFN
Sbjct: 1   NALSKHLIMTIKKNGKIYRQEFQKGIPTSDLEIIGET-NERGTTIEFFPDGEIMEVLDFN 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
            +TL  R +E+++LN ++ I   D+R+          + G+  F+  +  +KKP + + +
Sbjct: 60  NETLITRFKEMAYLNQNITIDFKDERTGFEESYHF--ENGLVQFIENI--NKKPFISTIL 115

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
             +G+     +++A+ +N+G+ E VL F NNI   DGGTH +G R+ L+R I +Y++ + 
Sbjct: 116 SFKGNEQETEVEIALAYNEGFDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAIINYIDANA 175

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +++    + GDD REG  +++S K+ DP+F  QTK KL SS ++ +V+    + L+ + 
Sbjct: 176 NAREKDTKITGDDVREGLIAIVSTKIIDPQFEGQTKGKLGSSFIKPIVQKLAFERLTKFF 235

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EAKII++K L A+  R+AA++AR+LTR+K    + +LPGKLADC  +DP +SE++
Sbjct: 236 EENPNEAKIIMQKALLAARGREAAKKARELTRKKENFSVGTLPGKLADCQSKDPLESEIY 295

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S+EI  +ITA G G
Sbjct: 296 LVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNMITAFGCG 351


>gi|220680552|dbj|BAH10765.1| DNA gyrase subunit B [Nocardia pigrifrangens]
          Length = 399

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 164/402 (40%), Positives = 238/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  +  +G  +  ++ + +    L + G     TGT + F     +F    +N
Sbjct: 1   NALSSRLEAEVDHDGYHWTQTYKDAVP-GQL-IQGEPTKATGTTIRFWADPAVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I L D+R                              + + 
Sbjct: 59  FETVSRRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSETAEAPKHSEGEATPTEHKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVRHINRTKQPIHNSVVSFSGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K    ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNRYAKDKKLLKDKDGNLTGDDIREGLAAIVSVKVSEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   DI  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 EKARIDKVLKNAEVQSIITAFGTGI-HDEFDISKLRYHKIVL 399


>gi|60459508|gb|AAX20090.1| DNA gyrase subunit B [Leptospira kirschneri serovar Cynopteri]
          Length = 140

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/138 (52%), Positives = 100/138 (72%), Gaps = 1/138 (0%)

Query: 22  DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81
           +AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V DNGR
Sbjct: 4   EAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVKDNGR 62

Query: 82  GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141
           GIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L++ + +
Sbjct: 63  GIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEVEVHQ 122

Query: 142 EGNIYEMSFINGILDNPL 159
           +G IY   +  G+  + +
Sbjct: 123 KGKIYTQKYEKGVPVSSV 140


>gi|220680189|dbj|BAH10713.1| DNA gyrase subunit B [Nocardia aobensis]
 gi|220680538|dbj|BAH10758.1| DNA gyrase subunit B [Nocardia kruczakiae]
          Length = 399

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 162/402 (40%), Positives = 238/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS +   I R+G  +   + +      L V G   + TGT   F    D+F    +N
Sbjct: 1   NALSSRMVTEIDRDGFHWSQEYKDAKP-GKL-VKGEPTDRTGTTQRFWADPDVFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDK----------------------------RSPEPRE 220
           ++T+  RL+E++FLN  + I+L D+                              P+ + 
Sbjct: 59  FETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETAEAPKHDEGSAAPPEPKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+ +  + +          +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 EKARIDRVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 399


>gi|195926956|dbj|BAG68365.1| gyrase B [Campylobacter coli]
          Length = 339

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 161/344 (46%), Positives = 225/344 (65%), Gaps = 5/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   + G +   TGT + F P   IF V +
Sbjct: 1   VVNALSKKLVATVERNGEIYRQEFSEGKVISEFDIIGKSK-KTGTTIEFWPDDTIFEVTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  R REL++LN  + I+  D R  +    +  ++GGI  FVS  D +KK  +  
Sbjct: 60  FDYDILAKRFRELAYLNPKITINFKDNRVDKS--ESFHFEGGISQFVS--DLNKKEALTK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 116 PIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +V+S+K+P+P+F  QTK KL SS VR +V     + LS 
Sbjct: 176 NASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSKASFEYLSK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 236 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L 
Sbjct: 296 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILK 339


>gi|108946660|gb|ABG23678.1| gyrase subunit B [Leptospira weilii]
 gi|108946674|gb|ABG23685.1| gyrase subunit B [Leptospira weilii]
 gi|108946676|gb|ABG23686.1| gyrase subunit B [Leptospira weilii]
 gi|108946678|gb|ABG23687.1| gyrase subunit B [Leptospira weilii]
          Length = 136

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/137 (54%), Positives = 102/137 (74%), Gaps = 1/137 (0%)

Query: 17  ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76
           IL+GL+AV+KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  +    V
Sbjct: 1   ILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIRISILPNNIIEV 59

Query: 77  SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136
            DNGRGIP D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L+
Sbjct: 60  KDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 137 LRIKREGNIYEMSFING 153
           + + ++G IY   +  G
Sbjct: 120 VEVHQKGKIYTQKYEKG 136


>gi|261488476|emb|CAU94913.1| DNA gyrase subunit B [Aquabacterium parvum]
          Length = 345

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 178/349 (51%), Positives = 242/349 (69%), Gaps = 22/349 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VN LS WL+L ++R+G +
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWLRLTVRRDGQV 59

Query: 146 YEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTL 192
           + + F  G+              +P+ V G   +  GTEV FLP  +IF   + ++Y+ L
Sbjct: 60  HFIEFKQGVPQDRVIEMRDGVEVSPMKVIGET-DKRGTEVHFLPDVEIFKENNEYHYEIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I LID+R+ +       Y GG++ FV ++++ K  L  S    QG
Sbjct: 119 AKRLRELSFLNNGVKIRLIDERNNKE--DNFAYAGGVKGFVEFINKGKNILNPSIFHAQG 176

Query: 253 SR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +      N+ +++AM+WN+ Y+ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 DKVSENGTNVGVEVAMQWNESYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR+ VE  V+  L+ W
Sbjct: 237 ELAKKAKVDVGGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDW 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           L E+P++AKII  K+++A+  R+AAR+AR++TRRKGVLD   LPGKLAD
Sbjct: 297 LLENPIDAKIICNKIVEAARAREAARKAREMTRRKGVLDGLGLPGKLAD 345


>gi|284813084|gb|ADB97211.1| DNA gyrase subunit B [Wohlfahrtiimonas chitiniclastica]
          Length = 354

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 197/356 (55%), Positives = 260/356 (73%), Gaps = 3/356 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQDFNY 189
           LSS L L IK++G ++E  +  G    PL   G+    +TGT V F PSS+IF++  F+Y
Sbjct: 1   LSSHLHLTIKQDGKLFEQEYTLGTPQYPLREIGTVDPEETGTTVYFKPSSEIFTITVFDY 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
             L+ RLRELSFLNS ++I L D+R     E    ++GGI AFV +++R K P+  S   
Sbjct: 61  QILKKRLRELSFLNSGIRIHLKDERYD--LEDIFEFEGGIRAFVEHINRKKTPINPSVFY 118

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
               +DN+ +++A++W   Y ENV CFTNNIPQKDGGTHL G R+A+TR +  Y+E++  
Sbjct: 119 CDNKQDNVIVEVALQWTTDYQENVYCFTNNIPQKDGGTHLLGFRAAITRTLNQYMEQNDL 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            KK K +  G+D REG T+V+S+K+P P+FSSQTK+KLVSSEVRS VES V+  ++ +L+
Sbjct: 179 LKKSKVNTSGEDAREGLTAVVSVKLPGPKFSSQTKDKLVSSEVRSAVESVVSAKIADFLQ 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P +AK+I  K+++A+  R+AAR AR+LTRRK  LDIA LPGKL DC E+DP  SELF+
Sbjct: 239 ENPSDAKLITGKIIEAARAREAARNARELTRRKSALDIAGLPGKLTDCQEKDPALSELFI 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           VEGDSAGGSAKQGR+R+ QAILPL+GKILNVER RFD++L S EIGTLITALG GI
Sbjct: 299 VEGDSAGGSAKQGRNRKFQAILPLKGKILNVERVRFDRILQSAEIGTLITALGCGI 354


>gi|238058454|gb|ACR39378.1| truncated DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 342

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 198/343 (57%), Positives = 257/343 (74%), Gaps = 3/343 (0%)

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
           + L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L
Sbjct: 1   TRLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEIL 59

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+         
Sbjct: 60  AKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTT 117

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK
Sbjct: 118 EQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKK 177

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P
Sbjct: 178 AKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENP 237

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEG
Sbjct: 238 GDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 297

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+G
Sbjct: 298 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 340


>gi|307343840|emb|CBJ19525.1| gyrase B subunit [Micromonospora sp. CR38]
          Length = 370

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 165/370 (44%), Positives = 240/370 (64%), Gaps = 8/370 (2%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS+ + + I + G ++   + +      L   G A + TG+ V+F P  D
Sbjct: 1   HGVGVSVVNALSTKMFVEIHKSGAVWRQHYTHSKP-GSLEK-GEATDRTGSAVSFWPDPD 58

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSY 235
           +F   DF++ T+  RL+E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +
Sbjct: 59  VFETVDFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+  K P+ ++ +      + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSA
Sbjct: 119 LNASKSPIHKTVVEFIAEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y        K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S 
Sbjct: 179 LTSVVNRYGTDKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSF 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+   ND L  W + +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLA
Sbjct: 238 VQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLA 297

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC   DP++SE+F+VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+ 
Sbjct: 298 DCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQ 357

Query: 476 TLITALGTGI 485
            LITALGTGI
Sbjct: 358 ALITALGTGI 367


>gi|163256330|dbj|BAF95675.1| DNA gyrase subunit B [Bradyrhizobium sp. KO23]
          Length = 272

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/168 (61%), Positives = 124/168 (73%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           YEV+DNAIDE+L G+A  + VTLN D S TV D+GRGIP D+HK EG+SAAEVIMT+LHA
Sbjct: 1   YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIHKGEGVSAAEVIMTQLHA 60

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+Q SYKVSGGLHGVGVSVVNALSS L LRI  +   + + F +G    PL V G A
Sbjct: 61  GGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWGDDKEHYIEFAHGDAVAPLKVVGDA 120

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               GTEVTFL S + F   ++++ TL+HRLREL+FLNS V I L D 
Sbjct: 121 PGKRGTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVHIVLSDH 168


>gi|220680560|dbj|BAH10769.1| DNA gyrase subunit B [Nocardia puris]
          Length = 400

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 164/403 (40%), Positives = 240/403 (59%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ +++ I R+G  +  ++ +    + L + G     TG  V F    +IF    +N
Sbjct: 1   NALSTRVEVEIDRDGYHWSQTYKDASP-SKL-IQGEPTERTGPTVRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I L D+R                               + +
Sbjct: 59  FETVSRRLQEMAFLNKGLTIVLTDERVSDSEITDEVASDTAEAPKHAEPGTEAPVEHKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+E FV +++R K+ +  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLEDFVRHINRTKQAIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ DP+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVGDPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQKTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR DK+L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 VEKARIDKVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 400


>gi|148762451|dbj|BAF63927.1| DNA gyrase subunit B [Virgibacillus sp. M2]
          Length = 325

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 153/328 (46%), Positives = 222/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ +++ +  +  I+ ++F  G+    + V G   + TGT V
Sbjct: 1   YKVCGGLHGVGASVVNALSTRMEVHVHLDNKIHFLAFEKGVPQGEIEVVGET-DVTGTTV 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF+    + +D L  RLREL+FLN  + I++ DKR+ E   +  +Y+GGI ++
Sbjct: 60  HFIPDPEIFTETTEYQFDILAQRLRELAFLNKGITITIEDKRTGEEP-VNYYYEGGISSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y++R K+ L       +G  + I++++A+++NDG+  N+  F NNI   +GGTH SG 
Sbjct: 119 VEYINRTKEVLHAP-FYSEGEEEGIAVEVAIQYNDGFSSNLYSFANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ LTR I  Y  KS   K++  ++ G+D REG T+++S+K PDP+F  QTK KL +SEV
Sbjct: 178 RTGLTRVINDYARKSNLFKENDPNLSGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           RSV +S  ++  S +L E+P   KIIV+K L AS  R AA++AR+LTRRK  L+I++LPG
Sbjct: 238 RSVTDSIFSETFSKFLFENPTVGKIIVEKGLMASRARMAAKKARELTRRKSALEISNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|237843801|ref|XP_002371198.1| DNA gyrase subunit B, putative [Toxoplasma gondii ME49]
 gi|211968862|gb|EEB04058.1| DNA gyrase subunit B, putative [Toxoplasma gondii ME49]
          Length = 1257

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/162 (50%), Positives = 112/162 (69%), Gaps = 1/162 (0%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y +DSI++L+GL+ V+ RP MYIG TD E GLHH+++E +DNA+DE   G    I V L+
Sbjct: 257 YTSDSIRVLEGLEPVRMRPGMYIGSTDSE-GLHHLVWEAIDNAVDEVENGDCRRIVVVLH 315

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D   TV+D+GRGIP D+H + G+SA E + T+LHAGGKF+  SY  +GGLHGVG SVVN
Sbjct: 316 ADRRVTVADDGRGIPCDVHPQTGLSALETVFTKLHAGGKFSPASYAFAGGLHGVGSSVVN 375

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           ALSS L++ + R+G ++ +SF  G + +PL V  S     G 
Sbjct: 376 ALSSQLRVSVLRDGKLHAISFSRGQVVSPLTVQTSPSLSRGN 417



 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 156/508 (30%), Positives = 237/508 (46%), Gaps = 43/508 (8%)

Query: 309  GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             S +   ++ G+  REG   V+S+KM +  F  QTK+KL + +VR +VE  V D L  + 
Sbjct: 773  NSHEKSLNIPGEFLREGLVGVVSLKMREAEFEGQTKKKLGNKKVRGIVEELVTDALLNYF 832

Query: 369  EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV---LDIASLPGKLADCSERDPKKS 425
            E HP   + +++K   A     AA+ ARD  R K     L +  LPGKL+DCS  + ++ 
Sbjct: 833  ERHPQNLQKLLQKATAARAAAAAAKAARDFARAKQQSSSLHLTLLPGKLSDCSPTNARER 892

Query: 426  ---ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER-ARFDKMLSSQEIGTLITAL 481
               ELF+VEG+SA GSAKQ R R  QAILPLRGKILNVE+   F ++  ++E+  L+ AL
Sbjct: 893  LSKELFIVEGESAAGSAKQARDRRTQAILPLRGKILNVEKLGNFARIFENEELKALVAAL 952

Query: 482  GTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            G  +   G+ S D+  LRY ++II+TDADVDGAH+R+LLLTFFFR  P L   G +++  
Sbjct: 953  GISVTKAGEVSADLEGLRYSRVIILTDADVDGAHVRSLLLTFFFRLQPELFRQGRIFVAC 1012

Query: 539  PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
            PPL+ I        +   +        +  S       D                     
Sbjct: 1013 PPLFKIAHFPVPHKLL--QDATAAFRKRPCSRATSAVPDEARA----------------- 1053

Query: 599  KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
              + D + + ++   E    +G    +         + +   R+  +     +S      
Sbjct: 1054 --VHDAHNDEEERGDESDDEAGRGGGKRLATETYVWSDEEVKRVFEVLRMHRESRKKEQR 1111

Query: 659  NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE---NYLTILSLICNGDKIK 715
                   +  RGV    VL G       ++       R  E                   
Sbjct: 1112 GPG----KRMRGVAAGAVLSGGEKPEHTAREPDRDDGRDGEREGEQDQEEGEERRSSDKT 1167

Query: 716  ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
            + G     +    +   G+++QR+KGLGEM   QL  TT++P TR L ++ + DA  A+ 
Sbjct: 1168 VPGLLEG-EADEQLSLPGVTLQRFKGLGEMQPEQLRRTTMSPVTRILKKISVADAEAAEA 1226

Query: 776  LFSRLMGDEVEPRREFIQENSLPSALDI 803
              + LMGD+V+ R++ I E    +  D+
Sbjct: 1227 AVASLMGDDVDARKKIIFE----ANRDV 1250


>gi|207107912|dbj|BAG71968.1| DNA gyrase subunit B [Gordonia paraffinivorans]
          Length = 411

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 172/414 (41%), Positives = 248/414 (59%), Gaps = 38/414 (9%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I+R+G+ +E ++ N      L + G     TGT V F P  +IF+
Sbjct: 1   GISVVNALSTKVELEIERDGHHWEQTYTNAKP-GEL-IKGEPTKKTGTVVRFWPDPEIFT 58

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLID------------------------------ 212
               FN +T+  RL+E++FLN  + I+L D                              
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDGNGDSEPSTAEVAEAVKSE 118

Query: 213 ----KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
               + + +P+  T +Y  G+  ++ +L+R K+P+  + I      +   +++AM+WN G
Sbjct: 119 TEKAEAAAKPKTRTYYYPDGLVDYIKHLNRTKQPIHNTVIGFSAKGEGHEVEIAMQWNAG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAK+IVKK  D++  
Sbjct: 239 VISVKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKVIVKKAADSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    Q
Sbjct: 299 RMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEIYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKLRYHKIVL 411


>gi|221481580|gb|EEE19962.1| DNA gyrase subunit B, putative [Toxoplasma gondii GT1]
          Length = 1271

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/161 (50%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y +DSI++L+GL+ V+ RP MYIG TD E GLHH+++E +DNA+DE   G    I V L+
Sbjct: 266 YTSDSIRVLEGLEPVRMRPGMYIGSTDSE-GLHHLVWEAIDNAVDEVENGDCRRIVVVLH 324

Query: 70  MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129
            D   TV+D+GRGIP D+H + G+SA E + T+LHAGGKF+  SY  +GGLHGVG SVVN
Sbjct: 325 ADRRVTVADDGRGIPCDVHPQTGLSALETVFTKLHAGGKFSPASYAFAGGLHGVGSSVVN 384

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           ALSS L++ + R+G ++ +SF  G + +PL V  S     G
Sbjct: 385 ALSSQLRVSVLRDGKLHAISFSRGQVVSPLTVQTSPSLSRG 425



 Score =  227 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 157/508 (30%), Positives = 238/508 (46%), Gaps = 43/508 (8%)

Query: 309  GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             S +   ++ G+  REG   V+S+KM +  F  QTK+KL + +VR +VE  V D L  + 
Sbjct: 787  NSHEKSLNIPGEFLREGLVGVVSLKMREAEFEGQTKKKLGNKKVRGIVEELVTDALLNYF 846

Query: 369  EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV---LDIASLPGKLADCSERDPKKS 425
            E HP   + +++K   A     AA+ ARD  R K     L +  LPGKL+DCS  + ++ 
Sbjct: 847  ERHPQNLQKLLQKATAARAAAAAAKAARDFARAKQQSSSLHLTLLPGKLSDCSPTNARER 906

Query: 426  ---ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER-ARFDKMLSSQEIGTLITAL 481
               ELF+VEG+SA GSAKQ R R  QAILPLRGKILNVE+   F ++  ++E+  L+ AL
Sbjct: 907  LSKELFIVEGESAAGSAKQARDRRTQAILPLRGKILNVEKLGNFARIFENEELKALVAAL 966

Query: 482  GTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            G  +   G+ S D++ LRY ++II+TDADVDGAHIR+LLLTFFFR  P L   G +++  
Sbjct: 967  GISVTKAGEVSADLDGLRYSRVIILTDADVDGAHIRSLLLTFFFRLQPELFRQGRIFVAC 1026

Query: 539  PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
            PPL+ I        +   +        +  S       D                     
Sbjct: 1027 PPLFKIAHFPVPHKLL--QDATAAFRKRPCSRATSAVPDEARA----------------- 1067

Query: 599  KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
              + D + + ++   E    +G    +         + +   R+  +     +S      
Sbjct: 1068 --VHDAHTDEEERGDESDDEAGRGGGKRLATETYVWSDEEVKRVFEVLRMHRESRKKEQR 1125

Query: 659  NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE---NYLTILSLICNGDKIK 715
                   +  RGV    VL G       ++       R  E                   
Sbjct: 1126 GPG----KRMRGVAADAVLSGGEKPEHTAREPDRDDGRDGERGGEQDQEEGEERRSSDKT 1181

Query: 716  ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
            + G     +    +   G+++QR+KGLGEM   QL  TT++P TR L ++ + DA  A+ 
Sbjct: 1182 VPGLLEG-EADEQLSLPGVTLQRFKGLGEMQPEQLRRTTMSPVTRILKKISVADAEAAEA 1240

Query: 776  LFSRLMGDEVEPRREFIQENSLPSALDI 803
              + LMGD+V+ R++ I E    +  D+
Sbjct: 1241 AVASLMGDDVDARKKIIFE----ANRDV 1264


>gi|148762447|dbj|BAF63925.1| DNA gyrase subunit B [Virgibacillus sp. KK-B1]
          Length = 325

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 153/328 (46%), Positives = 223/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ +++ +  +  I+ ++F  G+    + V G   + TGT V
Sbjct: 1   YKVFGGLHGVGASVVNALSTRMEVHVHLDNKIHFLAFEKGVPQGEIEVVGET-DVTGTTV 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF+    + +D L  RLREL+FLN  + I++ DKR+ E   ++ +Y+GGI ++
Sbjct: 60  HFIPDPEIFTETTEYQFDILAQRLRELAFLNKGITITIEDKRTGEEP-VSYYYEGGISSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y++R K+ L       +G  + IS+++A+++NDG+  N+  F NNI   +GGTH SG 
Sbjct: 119 VEYINRTKEVLHAP-FYSEGEEEGISVEVAIQYNDGFSSNLYSFANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ LTR I  Y  K+   K++  ++ G+D REG T+++S+K PDP+F  QTK KL +SEV
Sbjct: 178 RTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           RSV +S  ++  S +L E+P   KIIV+K L AS  R AA++AR+LTRRK  L+I++LPG
Sbjct: 238 RSVTDSIFSETFSKFLFENPNVGKIIVEKGLMASRARMAAKKARELTRRKSALEISNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|291539734|emb|CBL12845.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Roseburia intestinalis XB6B4]
          Length = 446

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 234/426 (54%), Gaps = 6/426 (1%)

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           + E ++LN ++ I   DKR PE   I    + GI  FV  L++  + L    +  +G +D
Sbjct: 1   MHETAYLNPALTIIYEDKRGPEVEHIVYHEEEGIIGFVKDLNKKNEVLH-DVVYFKGEQD 59

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
            I+++ A ++ + +HEN+L F NNI   +GGTH++G ++  T  I SY  +    K+   
Sbjct: 60  GITVEAAFQYTNEFHENILGFCNNIFNAEGGTHITGFKTVFTTVINSYARELGILKEKDS 119

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           +  G D R G T+++SIK PDPRF  QTK KL + +   V      D +  + +++    
Sbjct: 120 NFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNQDASRVTAKVTGDEIQLYFDKNLEVL 179

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K ++     A+ +R    RA+     K      S  GKLA+C  RD    E+F+VEGDSA
Sbjct: 180 KTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDS-NGKLANCESRDASICEIFIVEGDSA 238

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ---DSFDI 492
           GGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A G G  +   + FDI
Sbjct: 239 GGSAKTARDRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINAFGCGFSEGYGNDFDI 298

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG-ITRGKSLQ 551
            KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +Y+  PPLY  I      +
Sbjct: 299 TKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVAMPPLYKAIPSKGEEE 358

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           Y+ D+ +LE Y  N   +  ++ +     + ++      ++   +I K I+         
Sbjct: 359 YLYDDAALERYRKNHKSNFTLQRYKGLGEMDAEQLWETTLNPETRILKRIEIEDGRMASD 418

Query: 612 FIEQAV 617
             E  +
Sbjct: 419 ITELLM 424



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           ++   G++  +    + L+      +   ++QRYKGLGEM+A QLWETTLNP+TR L R+
Sbjct: 350 AIPSKGEEEYLYD-DAALERYRKNHKSNFTLQRYKGLGEMDAEQLWETTLNPETRILKRI 408

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +I D   A D+   LMG++V PR+ FI E++  +ALDI
Sbjct: 409 EIEDGRMASDITELLMGNDVPPRKMFIYEHAKDAALDI 446


>gi|148971323|gb|ABR20199.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 439

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 160/441 (36%), Positives = 240/441 (54%), Gaps = 22/441 (4%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGIL 155
           EVIMT LHAGGKF+ + Y  SGGLHGVGVSVV AL+S L+ ++ RE    + +++  G L
Sbjct: 1   EVIMTVLHAGGKFDGEVYDYSGGLHGVGVSVVCALASRLEAQVWRETEGSFTIAYEQGKL 60

Query: 156 DNPLVVT-GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             PL    GS  +  GT + F P  +IF     ++D +  R R  ++L   +++ +ID+R
Sbjct: 61  VQPLRKRPGSKAHPHGTRIKFWPDPEIFGDAVVDFDAVLERCRSKAYLIPGLRVDVIDRR 120

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLM-----------------QSPIRIQGSRDNI 257
              P + T   + G+   + +L  +                         IR Q      
Sbjct: 121 LDPPVKHTYTSRNGLVDLLGHLANNPLHKPIIIEGEGTYEETVQVLGDDGIRAQNMERTG 180

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            ++LA+ W  GY        N +    GGTHL+GL  AL+R +    E S   K    S 
Sbjct: 181 RLELALVWTGGYETQFQLAVNQVTTPRGGTHLTGLNQALSRVVVKAAEGSRVKKAKDPSP 240

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE-HPLEAK 376
             DD  EG   V+ +++P+P+F+ Q KE+L + +   +V   V   L+ W E       +
Sbjct: 241 NKDDVMEGLCLVMHLQIPEPQFNGQAKEELGTPQAHQLVYWIVARELAKWFETAPRTHVR 300

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           ++++KV+ A+  RDAARR+RD+ R+K    + +LP +L+D  +  P++SEL +VEGDSA 
Sbjct: 301 VVLEKVMAAARARDAARRSRDMARKKDRNQVLALPAELSDSYQHYPEESELLIVEGDSAA 360

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           G AK GR +  QA+LP+RGKILN  RA    + S+ E+  + +ALG   G    D  + R
Sbjct: 361 GPAKAGRDQRFQAVLPIRGKILNAARASAHDLASNAEVTAIFSALGLQPGPKC-DPEQRR 419

Query: 497 YHKIIIMTDADVDGAHIRTLL 517
           Y +++IMT+ DVDG+HIRTLL
Sbjct: 420 YTRVVIMTE-DVDGSHIRTLL 439


>gi|291535202|emb|CBL08314.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Roseburia intestinalis M50/1]
          Length = 446

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 234/426 (54%), Gaps = 6/426 (1%)

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           + E ++LN ++ I   DKR PE   I    + GI  FV  L++  + L    +  +G +D
Sbjct: 1   MHETAYLNPALTIIYEDKRGPEVEHIVYHEEEGIIGFVKDLNKKNEVLH-DVVYFKGEQD 59

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
            I+++ A ++ + +HEN+L F NNI   +GGTH++G ++  T  I SY  +    K+   
Sbjct: 60  GITVEAAFQYTNEFHENILGFCNNIFNAEGGTHITGFKTVFTTVINSYARELGILKEKDS 119

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           +  G D R G T+++SIK PDPRF  QTK KL + +   V      D +  + +++    
Sbjct: 120 NFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNQDASRVTAKVTGDEIQLYFDKNLEVL 179

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K ++     A+ +R    RA+     K      S  GKLA+C  RD    E+F+VEGDSA
Sbjct: 180 KTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDS-NGKLANCESRDASICEIFIVEGDSA 238

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ---DSFDI 492
           GGSAK  R R  QAILP+RGKILNVE+A  DK+L++ EI T+I A G G  +   + FDI
Sbjct: 239 GGSAKTARDRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINAFGCGFSEGYGNDFDI 298

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG-ITRGKSLQ 551
            KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +Y+  PPLY  I      +
Sbjct: 299 TKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVAMPPLYKAIPSKGEEE 358

Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
           Y+ D+ +LE Y  N   +  ++ +     + ++      ++   +I K I+         
Sbjct: 359 YLYDDAALERYRRNHKSNFTLQRYKGLGEMDAEQLWETTLNPETRILKRIEIEDGRMASD 418

Query: 612 FIEQAV 617
             E  +
Sbjct: 419 ITELLM 424



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           ++   G++  +    + L+      +   ++QRYKGLGEM+A QLWETTLNP+TR L R+
Sbjct: 350 AIPSKGEEEYLYD-DAALERYRRNHKSNFTLQRYKGLGEMDAEQLWETTLNPETRILKRI 408

Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803
           +I D   A D+   LMG++V PR+ FI E++  +ALDI
Sbjct: 409 EIEDGRMASDITELLMGNDVPPRKMFIYEHAKDAALDI 446


>gi|159576568|dbj|BAF92832.1| DNA gyrase subunit B [Halomonas meridiana]
          Length = 324

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 178/327 (54%), Positives = 234/327 (71%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALS  L+L I R+G ++E  + +G+   PL V G     +GT V
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELRLTIWRQGEVFEQIYHHGVPQAPLSVVGKTE-KSGTRV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS   F+  +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV
Sbjct: 60  HFRPSPATFANIEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+++K  L        G  D + +++AM+W+D + EN+ C+TNNIPQ+DGGTHL+G R
Sbjct: 118 DHLNKNKTVLNPVFHFNAGRDDGVEVEVAMQWSDAFTENIFCYTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AALTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    + +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRLFADYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP +SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSQSELYLVEGDSAGGSAK 324


>gi|326921999|ref|XP_003207240.1| PREDICTED: DNA topoisomerase 2-beta-like, partial [Meleagris
           gallopavo]
          Length = 1688

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 122/741 (16%), Positives = 248/741 (33%), Gaps = 116/741 (15%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 168 YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 227

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I ++++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 228 DNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 287

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            D 
Sbjct: 288 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPKIKHFEGDD 347

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++ L  K+            
Sbjct: 348 YTCITFQPDLSKFKMEKLDKDIVSLMTRRAYDLAGSCKGVKVMLNGKK---------LPV 398

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 399 NGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGFQQI-SFVNSIATTKGG 457

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 458 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFVNCLIENPSFDSQTKEN 514

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR---DAARRARDLTRRKG 403
           + + + +S                +    + I+  V   +  +     +       +   
Sbjct: 515 M-TLQPKSFGSKCQLSEKFFKAASNCGIIESILNWVKFKAQTQLNKKCSSVKHSKIKGIP 573

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
            LD A+  G        + +                                        
Sbjct: 574 KLDDANDAGNFFMQIMENAE---------------------------------------- 593

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLLTF 520
                     I  +I  +G    +   D      LRY KI+IMTD D DG+HI+ LL+ F
Sbjct: 594 ----------INNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINF 643

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSK 579
                PSL+ +GFL     P+   ++ K           +++  +    +     +    
Sbjct: 644 IHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENHKAWKIKYYKGL 703

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639
           G  +  + + +  D  +   L +   P       + A I+  F+ +   +    L     
Sbjct: 704 GTSTAKEAKEYFADMERHRILFRYAGPE------DDAAITLAFSKKKIDDRKEWLT---- 753

Query: 640 NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI---FSNR 696
              NF+ ++ ++  HG      +            F+ +   +FS     + I       
Sbjct: 754 ---NFMEDRRQRRLHGLPEQF-LYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGL 809

Query: 697 IEENYLTILSLICNGDKIKIT 717
                  + +     DK ++ 
Sbjct: 810 KPGQRKVLFTCFKRNDKREVK 830


>gi|220680524|dbj|BAH10751.1| DNA gyrase subunit B [Nocardia farcinica]
          Length = 400

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 165/403 (40%), Positives = 242/403 (60%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS +++ I  +G  +  ++      + L V G   + TGT V F    +IF    +N
Sbjct: 1   NALSSRVEVEIDVDGYHWSQTYKEATP-SKL-VKGEPTDRTGTTVRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I+L D+R                               + +
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETAEAPKHGEPTGEAASEHKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+E FV +++R K+ +  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVAEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR DK+L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 VEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVL 400


>gi|193788051|dbj|BAG50526.1| DNA gyrase subunit B [bacterium GMW-15]
          Length = 347

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 200/349 (57%), Positives = 262/349 (75%), Gaps = 4/349 (1%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLREL 199
           R+  I+   + +G+   PL VTG     TGT V F PS + F+   +F Y+ L  RLREL
Sbjct: 2   RDNKIHRQIYAHGVPQAPLAVTGDTE-KTGTMVRFWPSYETFTNVIEFEYEILAKRLREL 60

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D   +
Sbjct: 61  SFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGFGV 118

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A++WNDG+ EN+ CFTNNIPQ+DG THL+G R+A+TR + +Y++K   SKK K S  G
Sbjct: 119 EVALQWNDGFQENIYCFTNNIPQRDGSTHLAGFRAAITRTLNAYMDKEGYSKKAKVSATG 178

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V
Sbjct: 179 DDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLNEYLLENPSDAKIVV 238

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSA
Sbjct: 239 GKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSA 298

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           KQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D
Sbjct: 299 KQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 347


>gi|15551709|emb|CAC69410.1| DNA gyrase B subunit [Proteus mirabilis]
          Length = 323

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 182/326 (55%), Positives = 237/326 (72%), Gaps = 4/326 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L+L I R+G I++  + +G+ D+ L V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELTIHRDGKIHQQIYRSGVPDDRLKVIGET-D 59

Query: 168 DTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            +GT V F PS D      +F YD L  RLRELSFLNS V I LIDKR  + RE    Y+
Sbjct: 60  KSGTFVRFWPSLDTSKGETEFQYDILAKRLRELSFLNSGVSIRLIDKR--DNREDHFHYE 117

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GGI+AFV YL R+K P+ Q+       +D I +++AM WNDG+ ENV CFTNNIPQ+ GG
Sbjct: 118 GGIKAFVEYLSRNKTPIHQNVFYFSTEKDGIGVEVAMLWNDGFQENVYCFTNNIPQRGGG 177

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL G R+A+TR + +Y++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+K
Sbjct: 178 THLVGFRTAMTRTLNNYMDKEGFNKKSKISATGDDAREGLIAVISVKVPDPKFSSQTKDK 237

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           LVSSEV++ VE+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG  D
Sbjct: 238 LVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGAPD 297

Query: 407 IASLPGKLADCSERDPKKSELFLVEG 432
           +  LPGKLADCSERDP  SEL+LVEG
Sbjct: 298 LGGLPGKLADCSERDPAFSELYLVEG 323


>gi|220680540|dbj|BAH10759.1| DNA gyrase subunit B [Nocardia miyunensis]
          Length = 398

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 163/401 (40%), Positives = 240/401 (59%), Gaps = 30/401 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  I  +G+ +   + +      L + G +   TGT + F    +IF    FN
Sbjct: 1   NALSTRLQAEIDYDGHHWSQEYKDAKP-GKL-IQGESTKRTGTTIRFWADPNIFETTLFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR---------------------------SPEPREI 221
           ++T+  RL+E++FLN  + I+L D+R                             + +  
Sbjct: 59  FETVSRRLQEMAFLNKGLTITLTDERVTDSEVTEEVVSEHAEAPKHAEEAPPVEHKVKTR 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T  Y GG+E FV +++R K+P+  + +   G      +++AM+WN GY E+V  F N I 
Sbjct: 119 TYHYPGGLEDFVKHINRTKQPIHNTVVAFTGKGTVHELEVAMQWNSGYSESVHTFANTIN 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F  
Sbjct: 179 THEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVGEPQFEG 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L RR
Sbjct: 239 QTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARELVRR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NVE
Sbjct: 299 KSATDLGGLPGKLADCRSKDPTKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 KARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 398


>gi|6644320|gb|AAF21005.1|AF208254_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 204/375 (54%), Positives = 264/375 (70%), Gaps = 5/375 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           + NAL   L L I+   ++YE ++  G    PL   G A   TGTEV F P   IFS   
Sbjct: 11  LTNALCDKLLLTIRWNSHVYEQTYHLGEPQAPLKQIGHAT-TTGTEVRFWPIPTIFSDTL 69

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  RL ELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+   
Sbjct: 70  FHYEILAKRLLELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVKYLNQNKTPIHPK 127

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                   D I + +AM WND YH+ V CFTNNIPQ DG THL G R+ALTR + SY+++
Sbjct: 128 VFHFTTEHDGIGVQVAMHWNDAYHDWVYCFTNNIPQPDGWTHLVGFRTALTRTLNSYMDQ 187

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              S K K +  GD+ REG  +V+S+K+ D +FSSQ K+KLVSSEV++ VE  + + L+ 
Sbjct: 188 KDYSNKAKSAASGDNLREGLIAVISVKVRDTKFSSQIKDKLVSSEVKTAVEQAMGEKLAD 247

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E P +AK++V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SE
Sbjct: 248 FLLEIPGDAKMVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSE 307

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQ++GTLITALG GIG
Sbjct: 308 LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQQVGTLITALGCGIG 367

Query: 487 QDSFDINKLR--YHK 499
           +D     K+R  YH 
Sbjct: 368 RDECKQVKMRVSYHH 382


>gi|159576584|dbj|BAF92839.1| DNA gyrase subunit B [Halomonas sp. S2-2]
          Length = 324

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 185/327 (56%), Positives = 235/327 (71%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALS  LKL + R G +YE  + +G+ D+PL V G     +GT+V
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTE-KSGTQV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS++ F+  +F+YD L  RLRELSFLNS V I LID+RS    E    Y+GG+ AFV
Sbjct: 60  NFKPSTETFANIEFHYDILAKRLRELSFLNSGVAIRLIDERSG--AEELFHYEGGLRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K  L Q         D I++++AM+WND + EN+ C+TNNIPQ DGGTHL+G R
Sbjct: 118 DHLNTNKTALNQIFHFETQRDDGIAVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AALTRTLNHYIESEGLLKKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP  SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|118201774|gb|ABK79700.1| DNA gyrase subunit b [Loktanella vestfoldensis]
          Length = 356

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 203/357 (56%), Positives = 254/357 (71%), Gaps = 1/357 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS +L+LRI REG  +   F  G     L V G A    GTE+TFL +   FS +DF+
Sbjct: 1   NALSDFLELRIWREGKEHYARFEGGFTVESLRVVGDADGRKGTEITFLAALTTFSNRDFD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +  L+ RLREL+FLNS V+I L D R  EP    +FY+GG+  FV YLDR K PLMQ+PI
Sbjct: 61  FHILEKRLRELAFLNSGVRIILEDLRPAEPLRTDLFYEGGVREFVKYLDRSKTPLMQTPI 120

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G RD+I +++AM WND Y+E VL FTNNIPQ+DGGTHL+G R ALTR IT Y  ++ 
Sbjct: 121 YVTGERDDIGVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHLAGFRGALTRAITKYATETG 180

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK+K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR  VE+ + + L+ W 
Sbjct: 181 ITKKEKIALTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLMGEKLNEWF 240

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK I+ K+++A      A R     RRK  +D+     KL DCSE+DP K+E+F
Sbjct: 241 EENPATAKAIISKIVEA-AAAREAARKAREIRRKSAMDVNFNASKLKDCSEKDPSKTEVF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           LVEGDSAGGSA+ GR R  QAILPL+GKILNVERARFD+MLSSQEIG L+ ALGTGI
Sbjct: 300 LVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLSSQEIGNLVMALGTGI 356


>gi|308197537|gb|ADO17806.1| GyrB [Vibrio sinaloensis DSM 21326]
          Length = 292

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 150/277 (54%), Positives = 198/277 (71%), Gaps = 3/277 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIG 60

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
              + TGTE+ F PS + FS  +F+YD L  RLRELSFLNS V I L D+R  E +    
Sbjct: 61  ET-DKTGTEIRFWPSEETFSNTEFHYDILAKRLRELSFLNSGVSIKLRDER-EEDKNDHF 118

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            Y+GGI+AFV +L+ +K P+++        R++ I++++AM+WNDGY EN+ CFTNNIPQ
Sbjct: 119 MYEGGIQAFVEHLNTNKTPIIEKVFHFNAEREDGIAVEVAMQWNDGYQENIYCFTNNIPQ 178

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 179 RDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQ 238

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           TK+KLVSSEV+S VE  + + LS +L EHP EAK + 
Sbjct: 239 TKDKLVSSEVKSAVEQAMGEKLSEFLVEHPAEAKTVC 275


>gi|330367271|dbj|BAK19430.1| DNA gyrase subunit B [Helicobacter mastomyrinus]
          Length = 351

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 156/356 (43%), Positives = 223/356 (62%), Gaps = 5/356 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L + I + G+IY   F  GI  + L + G      GT + F P  ++  V +F+
Sbjct: 1   NALSKRLIMTINKNGHIYRQEFAKGIPQSNLEIIGDTK-KHGTTIEFFPDGEVMEVLEFD 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
              L  R +E+++LN ++ I   D+R            GG+  F+   D +KKPL+ S I
Sbjct: 60  AQILITRFKEMAYLNHNITICFKDERIGLEENYHF--DGGLSQFIQ--DINKKPLISSVI 115

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                     I++A+ +N+GY E VL F NNI   DGGTH +G R+ L+R I +Y+E + 
Sbjct: 116 GFDTIEQECEIEVALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAIMNYIEANA 175

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +++    V G+D REG  +++S K+ DP+F  QTK KL SS V+ +V+    + LS + 
Sbjct: 176 SAREKDSKVSGEDVREGLVAIISTKVIDPQFEGQTKGKLGSSFVKPIVQKLTYEKLSKFF 235

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P EA+ I++K + A+  R+AA++ARDLTR+K    + +LPGKLADC  +DP++SE++
Sbjct: 236 EENPNEARAIMQKAIMAARGREAAKKARDLTRKKENFSVGTLPGKLADCQSKDPRESEIY 295

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L S EI  +ITA G G
Sbjct: 296 LVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSDEIKNMITAFGCG 351


>gi|106895897|gb|ABE96841.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 338

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 198/341 (58%), Positives = 257/341 (75%), Gaps = 3/341 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTL 338


>gi|195926954|dbj|BAG68364.1| gyrase B [Campylobacter jejuni]
          Length = 339

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 156/344 (45%), Positives = 224/344 (65%), Gaps = 5/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R G IY   F  G + +   V G +   TGT + F P   IF V +
Sbjct: 1   VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FV+  D +KK  +  
Sbjct: 60  FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            I      +++++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 116 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL S+ VR +V     + L+ 
Sbjct: 176 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 236 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L 
Sbjct: 296 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILK 339


>gi|323146970|gb|ADX32778.1| DNA gyrase B subunit [endophytic bacterium 9(2011)]
 gi|323146986|gb|ADX32786.1| DNA gyrase B subunit [endophytic bacterium 16(2011)]
          Length = 231

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 103/234 (44%), Positives = 148/234 (63%), Gaps = 19/234 (8%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVIMT 101
           +EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE++MT
Sbjct: 1   FEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIVMT 60

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------ 155
            LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+       
Sbjct: 61  ELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVIE 120

Query: 156 ------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
                  +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I 
Sbjct: 121 EIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIR 179

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           L D+RS +       + GG++ FV Y+++ K  L  +   + G +D + +++AM
Sbjct: 180 LTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAM 231


>gi|254973569|gb|ACT98613.1| gyrase B [Alishewanella aestuarii]
          Length = 344

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 202/347 (58%), Positives = 260/347 (74%), Gaps = 4/347 (1%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L+L I+R+G ++   +  G+   PL V G     +GT + F PS  IFS  +F+YD L  
Sbjct: 1   LELTIRRKGQVHSQIYHLGVPQAPLAVIGETE-GSGTAIRFWPSPTIFSDINFHYDILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R+ +       Y GGIEAFV YL+R K  +          R
Sbjct: 60  RLRELSFLNSGVSIILTDERTDKT--DHFKYDGGIEAFVQYLNRSKTSIHPKAFYFTDQR 117

Query: 255 DN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           ++ I++++AM+WND Y ENV CFTNNIPQ+DGGTHL+G R ALTR + +Y+++   +KK 
Sbjct: 118 EDGIAVEVAMQWNDSYQENVFCFTNNIPQRDGGTHLAGFRGALTRVLNTYIDQEGYAKKM 177

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVRS VES + + L+ +L E+P 
Sbjct: 178 KVQASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRSAVESVMAEKLNEYLLENPG 237

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AKIIV K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGD
Sbjct: 238 DAKIIVGKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGD 297

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           SAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 298 SAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 344


>gi|220680520|dbj|BAH10749.1| DNA gyrase subunit B [Nocardia cyriacigeorgica]
          Length = 399

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 165/402 (41%), Positives = 238/402 (59%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +   G  +   + +      L + G     TGT + F P  +IF    FN
Sbjct: 1   NALSTRLEAEVDHAGYHWTQEYKDATP-GKL-IQGEPTTRTGTTIRFWPDPNIFETTSFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I+L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVSDTEVTDEVVSETAEAPKHADAEAQQTEHKVKS 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y ++    K    ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR DK+L + E+  +ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 EKARIDKVLKNNEVQAIITAFGTGI-HDEFDISKLRYHKIVL 399


>gi|123484430|ref|XP_001324264.1| topoisomerase II [Trichomonas vaginalis G3]
 gi|121907144|gb|EAY12041.1| topoisomerase II [Trichomonas vaginalis G3]
          Length = 1458

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 142/722 (19%), Positives = 268/722 (37%), Gaps = 71/722 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT---------------------DGESG 40
           SD+ +  S   +    L   + V  RP  YIG                           G
Sbjct: 4   SDSQEKLSESDEQYVKLTHREHVLTRPDSYIGSIEPRECKMWVCNEDGKFEFREISYVPG 63

Query: 41  LHHMIYEVLDNAIDESLEGYA-DIITVTLNM-DGSCTVSDNGRGIPTDLHKEEG----IS 94
           L+ +  E+L NA D          I V ++      +V ++G+GI T             
Sbjct: 64  LYKIFDEILVNAADNKQRDPPLTTIKVEVDPAQNRISVWNDGKGISTQKQFSPNDNCEYY 123

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFIN 152
             E I ++L     +N K  KV+GG +G G  + N  S    + I    EG  Y+ +  +
Sbjct: 124 IPEFIFSQLLTSSNYNDKQEKVTGGRNGYGAKLANIFSKKFHINIYNADEGINYQQTITD 183

Query: 153 GIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFS---VQDFNYDTLQHRLRELSFLNSSVQI 208
            +    P  +    G  + TE++F P  + F+   +   + D ++ R+ +L+ +   V+I
Sbjct: 184 NMTNIQPPKLKNGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRRVYDLAGILPKVKI 243

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                + P  +                   + K  ++  +    +    +  + +  +  
Sbjct: 244 FWNGNQVPIKKWEDY------------CKVYLKEDVKPLVCEVKNEKGYTWKIGVAPSKS 291

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
                + F N +   +GGTH+  + + +T+ IT Y++     +  K        +     
Sbjct: 292 REFQQISFVNCVATSNGGTHVDVVVNQITKYITDYLKNR---RSGKVETKPSVVKNFLYV 348

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            +   + +P F SQTKE+L   + +   +  + D     + +       IV  V + +  
Sbjct: 349 FVDSLVINPSFDSQTKERLTLDQKKLKDDCKLPDNFLDKILKTD-----IVALVTEYANF 403

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---R 445
           ++  + A     +KG L I +         + +  K  L L EGDSA  +A  G +   R
Sbjct: 404 KEQRKVANMKGTKKGRLII-NKLEDANMAGKAESLKCTLILTEGDSAKATAVTGLATIGR 462

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS---FDINKLRYHKIII 502
           +   + PLRGK+LN       K+  + EI  +I  +G    +       + +LRY  I+I
Sbjct: 463 DYYGVFPLRGKLLNTRDISAKKLSENDEIQNIIKIMGLDPMEKYENDDSMKRLRYGSIMI 522

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           M D DVDG+HI+ L++ F     P+L+    F+     P+  +T+G       +++    
Sbjct: 523 MADQDVDGSHIKGLIINFVHSMWPNLLKKRNFITEFITPIVKVTKGN------NKKGAIS 576

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI----EQAV 617
           +      S+      + KG   K         A +  +   +   +          ++  
Sbjct: 577 FFTIPEFSQWKAANNNGKGYKMKYYKGLATSTAEEAKEYFSNISKHKKVFIYTNENDEER 636

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
           I+  F  +   +    LA   AN      + +   +   ++   IL    A        +
Sbjct: 637 INLAFAKKRADDRKNWLAQLDANETYLGTKDTHIKYSDFVDKELILFSSYANYRAIPSSI 696

Query: 678 EG 679
           +G
Sbjct: 697 DG 698


>gi|193788045|dbj|BAG50523.1| DNA gyrase subunit B [bacterium GMW-5]
          Length = 347

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 199/350 (56%), Positives = 268/350 (76%), Gaps = 4/350 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R+G ++E  + +G+ D P+   G A   TGTE+ F PS   FS  +F+++ L  R+REL
Sbjct: 1   RRDGKVHEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEQTFSDVEFHFEILAKRVREL 59

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-IS 258
           SFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ +        RD+ I+
Sbjct: 60  SFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDDGIT 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  
Sbjct: 118 VEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+I
Sbjct: 178 GDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLI 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGS
Sbjct: 238 VGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGS 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           AKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D
Sbjct: 298 AKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 347


>gi|253762211|gb|ACT35557.1| gyrase B [Alishewanella sp. BL06]
          Length = 344

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 203/347 (58%), Positives = 261/347 (75%), Gaps = 4/347 (1%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L+L I+R+G ++   +  G+   PL V G    D+GT + F PS  IFS  +F+YD L  
Sbjct: 1   LELTIRRKGQVHSQIYHLGVPQAPLAVIGETE-DSGTAIRFWPSPTIFSDINFHYDILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R+ +       Y GGIEAFV YL+R K  +          R
Sbjct: 60  RLRELSFLNSGVSIILTDERTDKT--DHFKYDGGIEAFVQYLNRSKTSIHPKAFYFTDQR 117

Query: 255 DN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           ++ I++++AM+WND Y ENV CFTNNIPQ+DGGTHL+G R ALTR + +Y+++   +KK 
Sbjct: 118 EDGIAVEVAMQWNDSYQENVFCFTNNIPQRDGGTHLAGFRGALTRVLNTYIDQEGYAKKM 177

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVRS VES + + L+ +L E+P 
Sbjct: 178 KVQASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRSAVESVMAEKLNEYLLENPG 237

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           +AKIIV K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGD
Sbjct: 238 DAKIIVGKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGD 297

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           SAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITA
Sbjct: 298 SAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 344


>gi|220680556|dbj|BAH10767.1| DNA gyrase subunit B [Nocardia pseudobrasiliensis]
          Length = 398

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 167/401 (41%), Positives = 239/401 (59%), Gaps = 30/401 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  +   G  +   + +      L + G A   TGT + F P  +IF    FN
Sbjct: 1   NALSSRLEADVDFGGYHWSQEYKDAKP-GKL-IQGDATKRTGTTIRFWPDPEIFETTTFN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR---------------------------SPEPREI 221
           ++T+  RL+E++FLN  + I+L D+R                             + +  
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDQRVSQSDITDEVVSETAEAPKADTIGAPIEAKVKTR 118

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
           T  Y GG+E FV +++R K+ +  S +   G      +++AM+WN GY E+V  F N I 
Sbjct: 119 TYHYPGGLEDFVKHINRTKQSIHNSIVAFTGKGTGHEVEVAMQWNSGYSESVHTFANTIN 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  +  Y +     K    ++ GDD REG T+++S+K+ DP+F  
Sbjct: 179 THEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTGDDIREGLTAIVSVKIADPQFEG 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L RR
Sbjct: 239 QTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARIAARKARELVRR 298

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K   D+  LPGKLADC  +DPK SE+++VEGDSAGGSAK GR    QAILP+RGKI+NVE
Sbjct: 299 KSATDLGGLPGKLADCRSKDPKLSEIYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVE 358

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +AR D++L + E+ ++ITA GTGI  D FDI KLRYHKII+
Sbjct: 359 KARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIIL 398


>gi|170177808|gb|ACB10230.1| GyrB [Aeromonas aquariorum]
          Length = 339

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 200/341 (58%), Positives = 257/341 (75%), Gaps = 3/341 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTL 338


>gi|207107922|dbj|BAG71973.1| DNA gyrase subunit B [Gordonia sinesedis]
          Length = 410

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 175/412 (42%), Positives = 242/412 (58%), Gaps = 38/412 (9%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ ++L I+R+G  +   +       PL   GSA   TGT V F P S IF+  
Sbjct: 2   SVVNALSTRVELEIQRDGFHWTQEYRAAEP-GPLHK-GSASKKTGTTVRFWPDSSIFTET 59

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------------ 214
             FN +T+  RL+E++FLN  + I+L D R                              
Sbjct: 60  TRFNAETVSRRLQEMAFLNKGLTITLTDNRPQAVEAPGDPTGDEDSGADTAETVKSAEEK 119

Query: 215 ---SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
                +P+  T +Y  G+  ++ +L+R K P+ QS I          +++AM+WN GY E
Sbjct: 120 AVAEAKPKTRTYYYPDGLVDYIKHLNRTKXPIHQSVIGFTSKGTGHEVEIAMQWNGGYSE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS-VIGDDCREGFTSVL 330
           +V  F N I   +GGTH  G R+ALT  +  Y  +    K  K   + GDD REG  +V+
Sbjct: 180 SVHTFANTINTHEGGTHEEGFRAALTSTVNKYAVEKKFIKDRKEDRLSGDDIREGLAAVI 239

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ DP+F  QTK KL ++EV+  V+   N+ L  W E +P EAK I+KK +D++  R 
Sbjct: 240 SVKVADPQFEGQTKTKLGNTEVKGFVQKMANEHLGHWFEANPAEAKTIIKKAVDSAQARL 299

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR++ RRK   DI  LPGKLADC   DPKK E+++VEGDSAGGSAK GR    QAI
Sbjct: 300 AARKAREMVRRKTATDIGGLPGKLADCRSNDPKKCEVYIVEGDSAGGSAKSGRDSMYQAI 359

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           LP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++
Sbjct: 360 LPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHKIVL 410


>gi|195926964|dbj|BAG68369.1| gyrase B [Campylobacter mucosalis]
          Length = 339

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 156/344 (45%), Positives = 223/344 (64%), Gaps = 5/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L + IKR+GN++   F  GI    L V     N TGT V F    +IF V D
Sbjct: 1   VVNALSKKLVVTIKRDGNVHRQEFAKGIPVTDLEVI-KTTNRTGTAVEFWVDDEIFEVTD 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ + L  R +EL++LN  + I+  D+R           +GG+E+FV+ +  + K  +  
Sbjct: 60  FDKNILTKRFKELAYLNPKITINFKDQRDGTNESYHF--EGGLESFVNDM--NTKEAVSK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  +++ +D A+ +N+ Y EN+L F NNI   DGGTH +G R+ LTR IT+Y+  
Sbjct: 116 AVFFSGGEEDVMVDFALMYNETYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYIAA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +V+S+K+P+P+F  QTK KL SS V+ +V+    + LS 
Sbjct: 176 NAAAREKDTKITGEDIREGLIAVVSVKVPEPQFEGQTKGKLGSSYVKPIVQKMTFEVLSK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EA+ I+ K L A+  R+AA++ARDLTR+K  L + +LPGKLADC  +DP  SE
Sbjct: 236 YFEENPIEARAIMNKALMAARGREAAKKARDLTRKKEGLSVGTLPGKLADCQIKDPSISE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           L+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L 
Sbjct: 296 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILK 339


>gi|237769791|dbj|BAH59416.1| DNA gyrase subunit B [Nocardia alba]
          Length = 400

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 161/403 (39%), Positives = 235/403 (58%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ +++ I  +G  +  ++ +      L   G A   TGT V F    DIF    +N
Sbjct: 1   NALSTKVEVEIDVDGYHWSQTYKDAKP-GKLAQ-GEATKATGTTVRFWADPDIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I L D+R                               + +
Sbjct: 59  FETVARRLQEMAFLNKGLTIKLTDERVAVGDVIDEVVSETAEAPKDAEVVAAEAAEHKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+  FV +++R K  +  S +          +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLVDFVRHINRTKSAIHNSVVGYTVKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVGEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L  W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLQHWFEANPADAKTIVQKAVSSAQARMAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR D++L + E+ ++ITA GTGI  D FDI KLRY+KII+
Sbjct: 359 VEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYNKIIL 400


>gi|238767792|dbj|BAH66657.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238767806|dbj|BAH66664.1| DNA gyrase subunit beta [Aeromonas sp. No. 34]
 gi|238768204|dbj|BAH66665.1| DNA gyrase subunit beta [Aeromonas sp. No. 34-2]
 gi|238768208|dbj|BAH66667.1| DNA gyrase subunit beta [Aeromonas sp. No. 141]
 gi|238768210|dbj|BAH66668.1| DNA gyrase subunit beta [Aeromonas sp. No. 29]
 gi|238768218|dbj|BAH66672.1| DNA gyrase subunit beta [Aeromonas sp. No. 62]
 gi|238768220|dbj|BAH66673.1| DNA gyrase subunit beta [Aeromonas sp. No. 21]
 gi|238768254|dbj|BAH66690.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768262|dbj|BAH66694.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768264|dbj|BAH66695.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768298|dbj|BAH66712.1| DNA gyrase subunit beta [Aeromonas sp. KYO548]
 gi|238768300|dbj|BAH66713.1| DNA gyrase subunit beta [Aeromonas sp. KYO527]
 gi|238768306|dbj|BAH66716.1| DNA gyrase subunit beta [Aeromonas sp. KYO1682]
 gi|238768318|dbj|BAH66722.1| DNA gyrase subunit beta [Aeromonas sp. KYO1761]
 gi|238768320|dbj|BAH66723.1| DNA gyrase subunit beta [Aeromonas sp. KYO1866]
 gi|238768330|dbj|BAH66728.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768346|dbj|BAH66736.1| DNA gyrase subunit beta [Aeromonas sp. KC4]
 gi|238768354|dbj|BAH66740.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768360|dbj|BAH66743.1| DNA gyrase subunit beta [Aeromonas sp. KC7]
 gi|238768368|dbj|BAH66747.1| DNA gyrase subunit beta [Aeromonas sp. KC11]
 gi|238768382|dbj|BAH66754.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768384|dbj|BAH66755.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768388|dbj|BAH66757.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768398|dbj|BAH66762.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768408|dbj|BAH66767.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768414|dbj|BAH66770.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768432|dbj|BAH66779.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768436|dbj|BAH66781.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768438|dbj|BAH66782.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768454|dbj|BAH66790.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768468|dbj|BAH66797.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768470|dbj|BAH66798.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 196/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|220680558|dbj|BAH10768.1| DNA gyrase subunit B [Nocardia pseudovaccinii]
          Length = 401

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 163/404 (40%), Positives = 236/404 (58%), Gaps = 33/404 (8%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +  +G  +   + +      L + G     TGT + F    +IF    +N
Sbjct: 1   NALSTRLEADVDVDGYHWTQEYKDSKP-GKL-MQGDPTKRTGTTIRFWADPNIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  E   I                           
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDERVAETDVIDEVVSDTAEAPKHADPDAPAAPVEHKV 118

Query: 223 ----MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y GG+E FV +++R K+ +  S +   G      +++AM+WN GY E+V  F N
Sbjct: 119 KTRTYHYPGGLEDFVRHINRTKQAIHNSVVAFTGKGTGHELEVAMQWNSGYSESVHTFAN 178

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+
Sbjct: 179 TINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQ 238

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++EV+S V+   N+ LS W E +P +AK IV K + ++  R AAR+AR+L
Sbjct: 239 FEGQTKTKLGNTEVKSFVQRTCNEHLSHWFEANPADAKTIVNKAVSSAQARVAARKAREL 298

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
            RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+
Sbjct: 299 VRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKII 358

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 NVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 401


>gi|238768376|dbj|BAH66751.1| DNA gyrase subunit beta [Aeromonas sp. MU1]
          Length = 338

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 196/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE +F  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTFHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|238768322|dbj|BAH66724.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 254/340 (74%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV Y +++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYXNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|159576582|dbj|BAF92838.1| DNA gyrase subunit B [Halomonas sp. KK-L3-2]
          Length = 325

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 152/328 (46%), Positives = 222/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ +++ +  +  I+ ++F  G+    + V G   + TGT V
Sbjct: 1   YKVFGGLHGVGASVVNALSTRMEVHVHLDNKIHFLAFEKGVPQGEIEVVGET-DVTGTTV 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF+    + +D L  RLREL+FLN  + I++ DKR+ E    + +Y+GGI ++
Sbjct: 60  HFIPDPEIFTETTEYQFDILAQRLRELAFLNKGITITIEDKRTGEEPG-SYYYEGGISSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y++R K+ L       +G  + IS+++A+++NDG+  N+  F NN+   +GGTH SG 
Sbjct: 119 VEYINRTKEVLHAP-FYSEGEEEGISVEVAIQYNDGFSSNLYSFANNVHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ LTR I  Y  K+   K++  ++ G+D REG T+++S+K PDP+F  QTK KL +SEV
Sbjct: 178 RTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           RSV +S  ++  S +L E+P   KIIV+K L AS  R AA++AR+LTRRK  L+I++LPG
Sbjct: 238 RSVTDSIFSETFSKFLFENPTVGKIIVEKGLMASRARMAAKKARELTRRKSALEISNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|220680518|dbj|BAH10748.1| DNA gyrase subunit B [Nocardia cummidelens]
 gi|220680528|dbj|BAH10753.1| DNA gyrase subunit B [Nocardia fluminea]
 gi|220680568|dbj|BAH10773.1| DNA gyrase subunit B [Nocardia soli]
 gi|220680592|dbj|BAH10785.1| DNA gyrase subunit B [Nocardia salmonicida]
          Length = 400

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 161/403 (39%), Positives = 235/403 (58%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ +++ I  +G  +  ++ +      L   G A   TGT V F    DIF    +N
Sbjct: 1   NALSTKVEVEIDVDGYHWTQTYKDAKP-GKLAQ-GEATKATGTTVRFWADPDIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I L D+R                               + +
Sbjct: 59  FETVARRLQEMAFLNKGLTIKLTDERVAVGDVIDEVVSETAEAPKDAEVVAAEAAEHKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+  FV +++R K  +  S +          +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLVDFVRHINRTKSAIHNSVVGYTVKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVGEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L  W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLQHWFEANPADAKTIVQKAVSSAQARMAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP K E+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR D++L + E+ ++ITA GTGI  D FDI KLRY+KII+
Sbjct: 359 VEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYNKIIL 400


>gi|238767804|dbj|BAH66663.1| DNA gyrase subunit beta [Aeromonas sp. No. 32]
 gi|238768216|dbj|BAH66671.1| DNA gyrase subunit beta [Aeromonas sp. No. 14-2]
 gi|238768228|dbj|BAH66677.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768230|dbj|BAH66678.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768234|dbj|BAH66680.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768240|dbj|BAH66683.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768242|dbj|BAH66684.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768244|dbj|BAH66685.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768246|dbj|BAH66686.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768252|dbj|BAH66689.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768294|dbj|BAH66710.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768308|dbj|BAH66717.1| DNA gyrase subunit beta [Aeromonas sp. KYO28]
 gi|238768312|dbj|BAH66719.1| DNA gyrase subunit beta [Aeromonas sp. KYO562]
 gi|238768324|dbj|BAH66725.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768348|dbj|BAH66737.1| DNA gyrase subunit beta [Aeromonas sp. KC5]
 gi|238768402|dbj|BAH66764.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768404|dbj|BAH66765.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768416|dbj|BAH66771.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768420|dbj|BAH66773.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768422|dbj|BAH66774.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768434|dbj|BAH66780.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768444|dbj|BAH66785.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768448|dbj|BAH66787.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768456|dbj|BAH66791.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768466|dbj|BAH66796.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 198/340 (58%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|222839518|gb|EEE77855.1| predicted protein [Populus trichocarpa]
          Length = 422

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 179/366 (48%), Gaps = 18/366 (4%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
              S Y   SI++LKGL+ VK+RP MY   T  ++ LH +  EV+DNA DE+L G+   I
Sbjct: 26  TSASEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHVL-QEVIDNAADEALAGFGKKI 81

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVSGGLH 121
             TL+ DGS +V D+GRGIP  +H EE     E++ TRLHA     K    +Y  SGGLH
Sbjct: 82  RFTLHSDGSYSVEDDGRGIPFGMHPEEKAPVVELVFTRLHAGGKFDKGKGGAYSFSGGLH 141

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTEVTFLPSS 179
           GVGVSV NAL++ L+  I REG +  ++F  G +  PL     A  +   GT V   P +
Sbjct: 142 GVGVSVTNALATRLEACIHREGKVATIAFSGGDVVEPLQSRPLAAGERKQGTTVRVWPDA 201

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
             F         L H LR  + L   V ++L+++++ + +      KGG+  ++      
Sbjct: 202 RYFESPQLPMGELMHLLRSKAVLMPGVSVTLVNEKTRDTQTWQF--KGGLRDYLQQSLHG 259

Query: 240 KKPLMQSPIRIQGSRDNISI------DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +  +          R + S          + + +        + N IP   GGTH SGLR
Sbjct: 260 EAVIPLFEGEGFADRHHDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGTHDSGLR 319

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L + + +++E           ++ DD     + VL+ K+ DP+F  Q KE+L S +  
Sbjct: 320 DGLFQAVKAFIEMH-SLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLNSRDAV 378

Query: 354 SVVESF 359
            +V  +
Sbjct: 379 RLVSGY 384


>gi|220680574|dbj|BAH10776.1| DNA gyrase subunit B [Nocardia thailandica]
          Length = 400

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 162/403 (40%), Positives = 236/403 (58%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L+  I  +G  +   + +      L + G     TGT + F    +IF    +N
Sbjct: 1   NALSSKLEAEIDNDGYHWTQVYKDAKP-GQL-IQGEPTKRTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  E                               
Sbjct: 59  FETVSRRLQEMAFLNKGLTITLTDQRVSENDVTDEVVSETAEAPKHAEEGAEAPAEPKVK 118

Query: 223 ---MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                Y GG+  FV +++R K P+  S +   G      +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLVDFVRHINRTKTPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVGEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  ++P KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKEPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 VEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 400


>gi|238768366|dbj|BAH66746.1| DNA gyrase subunit beta [Aeromonas sp. KC10]
          Length = 338

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 254/340 (74%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|238768222|dbj|BAH66674.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 338

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 198/340 (58%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY+EK   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|220680586|dbj|BAH10782.1| DNA gyrase subunit B [Nocardia vinacea]
          Length = 399

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 165/402 (41%), Positives = 236/402 (58%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L+  I  +G  +  ++ +      L V G     TGT + F    +IF    +N
Sbjct: 1   NALSHRLEPEIDHDGYHWSQTYQDAKP-GKL-VQGEPTKRTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRS----------------------------PEPRE 220
           ++T+  RL+E++FLN  + I L D+R                              + + 
Sbjct: 59  FETVARRLQEMAFLNKGLTIVLTDERVSDTDVTDEVVSETAEAPKHADEEAPAPAHKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVKHINRTKQPIHNSVVSFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K    ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ LS W E +P +AK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNEHLSHWFEANPADAKTIVNKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 EKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 399


>gi|205371907|ref|ZP_03224727.1| DNA gyrase subunit B [Bacillus coahuilensis m4-4]
          Length = 160

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/158 (53%), Positives = 114/158 (72%), Gaps = 4/158 (2%)

Query: 1   MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           MS   + IQN +YD  +IQ+L+GL+AV+KRP MYIG T    GLHH+++E++DN+IDE+L
Sbjct: 1   MSLENEQIQNQAYDESNIQVLEGLEAVRKRPGMYIGST-ASKGLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
            G+ D I V +  D S TV+DNGRGIP  +H++ G  A EVI+T LHAGGKF    YKVS
Sbjct: 60  AGHCDEINVVIEKDNSITVTDNGRGIPVGIHEKMGRPAVEVILTVLHAGGKFGGGGYKVS 119

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL 155
           GGLHGVG SVVNALS+ L++ + R+G +Y   +  G+ 
Sbjct: 120 GGLHGVGASVVNALSTTLEVHVHRDGKVYHQQYERGVP 157


>gi|262166470|ref|ZP_06034207.1| topoisomerase IV subunit B [Vibrio mimicus VM223]
 gi|262170623|ref|ZP_06038301.1| topoisomerase IV subunit B [Vibrio mimicus MB-451]
 gi|261891699|gb|EEY37685.1| topoisomerase IV subunit B [Vibrio mimicus MB-451]
 gi|262026186|gb|EEY44854.1| topoisomerase IV subunit B [Vibrio mimicus VM223]
          Length = 508

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 160/462 (34%), Positives = 241/462 (52%), Gaps = 10/462 (2%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDF 187
           NALS  +++ ++R+G +YE++F +G     L VTG+ G  +TGT V F P +  F   +F
Sbjct: 2   NALSKRVEVAVRRDGQVYEIAFEHGDKVTELAVTGTCGRRNTGTSVHFWPDTKYFDSPNF 61

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +   L + LR  + L   ++I   DK      E    Y+ G++ +++   +    L + P
Sbjct: 62  SVSRLINNLRAKAVLCPGLEIIFTDK--VNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEP 119

Query: 248 IRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
              + +    +   A +   +G       + N IP   GGTH++GLR  L   +  + E 
Sbjct: 120 FTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEF 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
                +    + G+D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  S 
Sbjct: 180 RNLLPRG-VKLTGEDVFDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSL 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           WL E P  A+ + +  +  +       RA     RK +    +LPGKL DC+ +D  ++E
Sbjct: 239 WLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKIASGPALPGKLTDCTVQDLNRTE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           LFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +  ++  GI 
Sbjct: 296 LFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI--SVALGID 353

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
            DS ++  LRY K+ I+ DAD DG HI TLL   F R   +L+  G +Y+  PPLY I  
Sbjct: 354 PDSDNLESLRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDC 413

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           GK + Y  D++  E  L   S  +        KG+   N L+
Sbjct: 414 GKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQ 455



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 231 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMRASKKVVRKKIASGPALPGKLTDCTVQD 290

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 291 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 338

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   +      +   
Sbjct: 339 ASQEVHDISVALGIDPDSDNLESLRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 398

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 399 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 458

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 459 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRTWLQRN 502


>gi|159576577|dbj|BAF92836.1| DNA gyrase subunit B [Halomonas venusta]
          Length = 324

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 176/327 (53%), Positives = 235/327 (71%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I R+G ++E  + +G+   PL + G     +GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEELRLTIWRQGEVFEQVYQHGVPQAPLGIVGKTE-KSGTRV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS + F+  +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV
Sbjct: 60  HFRPSPNTFANIEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+++K  L           D + +++AM+W++ + EN+ C+TNNIPQ+DGGTHL+G R
Sbjct: 118 DHLNKNKTVLNPVFHFNAVREDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AALTRTLNHYIEAQGLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    + +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRLFADYLIEKPNEAKSIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP +SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSQSELYLVEGDSAGGSAK 324


>gi|238767794|dbj|BAH66658.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768224|dbj|BAH66675.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768336|dbj|BAH66731.1| DNA gyrase subunit beta [Aeromonas sp. TSC4]
 gi|238768462|dbj|BAH66794.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|118201810|gb|ABK79718.1| DNA gyrase subunit b [Salipiger mucosus]
          Length = 365

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 195/365 (53%), Positives = 267/365 (73%), Gaps = 8/365 (2%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  +++ + R+G  + ++F +G+LD PL V G A   TGT VTF PS ++FS  +F+
Sbjct: 1   NALSERVEVTVYRDGKQHFLTFKDGVLDQPLDVVGDAPRKTGTVVTFWPSPEVFSSIEFD 60

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
              ++ RLREL+FLNS V+I+  DK      +  ++Y+GG+  FV Y+DR + P+M+ P+
Sbjct: 61  GKIVEKRLRELAFLNSGVRINFHDKSRNGVGQHDLYYEGGVSEFVKYVDRARTPIMKKPV 120

Query: 249 RIQGSRD--------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +G R          I I+ A++WNDGY ENVL +TNNIPQ DGGTH+SG+R+ALTR I
Sbjct: 121 VARGERTVTAGDGEVTIGIEAAIQWNDGYSENVLAYTNNIPQGDGGTHISGMRAALTRCI 180

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           + YVE++    + K  +  DD REG T VLS+K+PDP+FSSQTK+KLVSSEV   V+  +
Sbjct: 181 SKYVEENINKGRKKVELSADDIREGMTCVLSVKVPDPKFSSQTKDKLVSSEVTGPVKQVL 240

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ND L++WLEEHP EAK ++ K ++A+  R AAR+AR+++R+K   DIA+L GKL DC  +
Sbjct: 241 NDVLNSWLEEHPDEAKAVIGKAVEAAAARAAARKAREMSRKKASNDIANLLGKLKDCQTK 300

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           +PK+SELF+VEGDSAGGSA+QGRSR+NQAILPLRGK+LN ERAR D++L S++IGTLI A
Sbjct: 301 NPKESELFIVEGDSAGGSAQQGRSRKNQAILPLRGKVLNTERARLDRILKSEQIGTLINA 360

Query: 481 LGTGI 485
           LG GI
Sbjct: 361 LGCGI 365


>gi|190148870|gb|ACE63410.1| DNA gyrase B subunit [Pseudonocardia zijingensis]
          Length = 378

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 164/381 (43%), Positives = 234/381 (61%), Gaps = 18/381 (4%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS+ L + I  EG ++   + + +   PL   G     TGT VTF    DIF    +N +
Sbjct: 1   LSTALDVEIHTEGKVWRQHYAHSVP-GPLRK-GEDTTRTGTSVTFWADPDIFETTTYNIE 58

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSP---------------EPREITMFYKGGIEAFVSY 235
           T++ RL+E++FLN  + I L D+R+                + +E T  Y  G+E FV+Y
Sbjct: 59  TIRRRLQEMAFLNKGLTIVLRDERNGHPADEEEPDAEGYVAKVKEYTFCYPNGLEDFVAY 118

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L++ K P+ +  I      ++ ++++AM+WN GY E+V  F N I   +GGTH  G RSA
Sbjct: 119 LNKAKDPIHKKLISYSAESEDHAVEVAMQWNSGYTESVYTFANTINTHEGGTHEEGFRSA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y       K    ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S 
Sbjct: 179 LTTTVNRYARDKKLLKDKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSF 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+   N+ L+ W E +P EAK IV K + ++  R AAR+AR+L RRK   DI  LPGKLA
Sbjct: 239 VQRVSNEWLADWFERNPTEAKTIVNKAVQSAQARIAARKARELVRRKSAGDIGGLPGKLA 298

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC   DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI+NVE+AR D++L + E+ 
Sbjct: 299 DCRSTDPAKSEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQ 358

Query: 476 TLITALGTGIGQDSFDINKLR 496
           ++ITALGTGI  D FD++KLR
Sbjct: 359 SIITALGTGI-HDEFDLSKLR 378


>gi|238768290|dbj|BAH66708.1| DNA gyrase subunit beta [Aeromonas hydrophila subsp. hydrophila]
          Length = 338

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 196/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++Y+ ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYKQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|238767802|dbj|BAH66662.1| DNA gyrase subunit beta [Aeromonas sp. No. 14]
 gi|238768212|dbj|BAH66669.1| DNA gyrase subunit beta [Aeromonas sp. No. 503]
 gi|238768214|dbj|BAH66670.1| DNA gyrase subunit beta [Aeromonas sp. No. 20]
 gi|238768226|dbj|BAH66676.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768232|dbj|BAH66679.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768236|dbj|BAH66681.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768238|dbj|BAH66682.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768248|dbj|BAH66687.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768282|dbj|BAH66704.1| DNA gyrase subunit beta [Aeromonas hydrophila subsp. hydrophila]
 gi|238768286|dbj|BAH66706.1| DNA gyrase subunit beta [Aeromonas hydrophila subsp. hydrophila]
 gi|238768292|dbj|BAH66709.1| DNA gyrase subunit beta [Aeromonas hydrophila subsp. hydrophila]
 gi|238768296|dbj|BAH66711.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768302|dbj|BAH66714.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768310|dbj|BAH66718.1| DNA gyrase subunit beta [Aeromonas sp. KYO1235]
 gi|238768314|dbj|BAH66720.1| DNA gyrase subunit beta [Aeromonas sp. KYO1080]
 gi|238768328|dbj|BAH66727.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768332|dbj|BAH66729.1| DNA gyrase subunit beta [Aeromonas sp. TSC1]
 gi|238768352|dbj|BAH66739.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768356|dbj|BAH66741.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768372|dbj|BAH66749.1| DNA gyrase subunit beta [Aeromonas sp. KC13]
 gi|238768380|dbj|BAH66753.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768386|dbj|BAH66756.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768390|dbj|BAH66758.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768394|dbj|BAH66760.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768396|dbj|BAH66761.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768400|dbj|BAH66763.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768430|dbj|BAH66778.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|238768276|dbj|BAH66701.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768280|dbj|BAH66703.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768340|dbj|BAH66733.1| DNA gyrase subunit beta [Aeromonas sp. KC1]
 gi|238768358|dbj|BAH66742.1| DNA gyrase subunit beta [Aeromonas sp. KC6]
 gi|238768362|dbj|BAH66744.1| DNA gyrase subunit beta [Aeromonas sp. KC8]
 gi|238768364|dbj|BAH66745.1| DNA gyrase subunit beta [Aeromonas sp. KC9]
 gi|238768410|dbj|BAH66768.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 338

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 195/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|207107890|dbj|BAG71957.1| DNA gyrase subunit B [Gordonia amarae]
          Length = 411

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 172/414 (41%), Positives = 240/414 (57%), Gaps = 38/414 (9%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L IKR+G  +  +++N      L   G+A   TGT   F P   IF+
Sbjct: 1   GISVVNALSTKVELEIKRDGFQWSQTYLNSEPQT-LHQ-GAASRKTGTTTRFWPDPAIFT 58

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLI------------------------------- 211
               FN +T+  RL+E++FLN  + I+L                                
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDNRPQAVEAPGDPNGDGDTPGGTELAEVVQS 118

Query: 212 --DKRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
              K + + +  T  Y  G+  ++ +   R K P+ QS I   G      +++AM+WNDG
Sbjct: 119 PAQKATAKSKTRTYHYADGLIDYIKHINKRSKNPIHQSVIGFSGKGTGHEVEIAMQWNDG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E++  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +
Sbjct: 179 YSESIHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLIKEKDTKLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L+ W E +P EAK I+KK +D++  
Sbjct: 239 VISVKVSDPQFEGQTKTKLGNTEVKGFVQKICNEHLAHWFESNPAEAKNIIKKAVDSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRARD+ RRK   DI  LPGKLADC   DP   E+++VEGDSAGGSAK GR    Q
Sbjct: 299 RAAARRARDMVRRKTATDIGGLPGKLADCRSNDPALCEVYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 AILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 411


>gi|238768426|dbj|BAH66776.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768428|dbj|BAH66777.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSA-GTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|220680582|dbj|BAH10780.1| DNA gyrase subunit B [Nocardia vermiculata]
          Length = 400

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 162/403 (40%), Positives = 239/403 (59%), Gaps = 32/403 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ + + I  +G  +   + +      L V G     TGT   F    ++F    +N
Sbjct: 1   NALSTRMVVDIDTDGYHWTQEYKDAKP-GKL-VQGDPTKRTGTTQRFWADPNVFETTVYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SPEPR 219
           ++T+  RL+E++FLN  + I+L D+R                              P+ +
Sbjct: 59  FETISRRLQEMAFLNKGLTITLTDERVTEAEVTSEVVSEKAEAPKTDEEVASEAAEPKVK 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
             T  Y GG+E FV +++R K+P+  S +          +++AM+WN GY E+V  F N 
Sbjct: 119 TRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTSKGTGHELEIAMQWNSGYSESVHTFANT 178

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y ++    K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 179 INTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQF 238

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L 
Sbjct: 239 EGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARELV 298

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+N
Sbjct: 299 RRKSATDLGGLPGKLADCRSKDPAKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIIN 358

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           VE+AR D++L + E+  +ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 VEKARIDRVLKNNEVQAIITAFGTGI-HDEFDISKLRYHKIVL 400


>gi|238767800|dbj|BAH66661.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768206|dbj|BAH66666.1| DNA gyrase subunit beta [Aeromonas sp. No. 23]
 gi|238768250|dbj|BAH66688.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768256|dbj|BAH66691.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768258|dbj|BAH66692.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768260|dbj|BAH66693.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768266|dbj|BAH66696.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768270|dbj|BAH66698.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768278|dbj|BAH66702.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768304|dbj|BAH66715.1| DNA gyrase subunit beta [Aeromonas sp. KYO559]
 gi|238768316|dbj|BAH66721.1| DNA gyrase subunit beta [Aeromonas sp. KYO044]
 gi|238768326|dbj|BAH66726.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768334|dbj|BAH66730.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|238768338|dbj|BAH66732.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|238768350|dbj|BAH66738.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768370|dbj|BAH66748.1| DNA gyrase subunit beta [Aeromonas sp. KC12]
 gi|238768374|dbj|BAH66750.1| DNA gyrase subunit beta [Aeromonas sp. KC14]
 gi|238768392|dbj|BAH66759.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768412|dbj|BAH66769.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768418|dbj|BAH66772.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768424|dbj|BAH66775.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768440|dbj|BAH66783.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768442|dbj|BAH66784.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768446|dbj|BAH66786.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768450|dbj|BAH66788.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768452|dbj|BAH66789.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768464|dbj|BAH66795.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 254/340 (74%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|159576562|dbj|BAF92829.1| DNA gyrase subunit B [Halomonas elongata]
          Length = 324

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 179/327 (54%), Positives = 228/327 (69%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALS  LKL I R+G ++E  + +G    PL V G     TG+ V
Sbjct: 1   YKVYGGLHGVGVSVVNALSEELKLTIWRQGQVHEQIYRHGEAVAPLAVVG-TTEQTGSRV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PSS+ F   +F+YD L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV
Sbjct: 60  HFRPSSETFQNIEFHYDILAKRLRELSFLNSGVAIRLTDERTGKE--ELFHYEGGLRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K  L           D + +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R
Sbjct: 118 DHLNTNKTVLNPVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR +  Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 ASLTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRQFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP  SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|238768274|dbj|BAH66700.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 338

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 254/340 (74%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSA-GTGTEVRFWPSPAIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|238768268|dbj|BAH66697.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768272|dbj|BAH66699.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768288|dbj|BAH66707.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 338

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 194/340 (57%), Positives = 253/340 (74%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSS-GTGTEVRFWPSPTIFTDTLYHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+           
Sbjct: 61  RLRELSFLNSGVSIRLHDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEH 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|195926974|dbj|BAG68374.1| gyrase B [Campylobacter upsaliensis]
          Length = 339

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 163/344 (47%), Positives = 227/344 (65%), Gaps = 5/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++REG IY   F  G + +   + G +   TGT + F P  +IF + +
Sbjct: 1   VVNALSKKLVATVQREGKIYRQEFAKGQIASEFGIIGESK-KTGTSIEFFPDEEIFELTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R    R  +  ++GGI  FVS  D +KK  +  
Sbjct: 60  FDYEILAKRFRELAYLNPKITINFKDNRVG--RNESFHFEGGISQFVS--DLNKKQALTK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI      DN+++++A+ +ND Y EN+L F NNI   DGGTH +G R  LTR IT+YVE 
Sbjct: 116 PIFFSVDEDNVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHETGFRMGLTRVITNYVEA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +++S+K+P+P+F  QTK KL SS VR +V     + LS 
Sbjct: 176 NASAREKDNKITGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVRPIVNKASFEYLSK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 236 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L 
Sbjct: 296 IYLVEGDSAGGSAKQGRERAFQAILPLRGKILNVEKARLDKILK 339


>gi|261488462|emb|CAU94906.1| DNA gyrase subunit B [Mitsuaria chitosanitabida]
          Length = 337

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 169/340 (49%), Positives = 234/340 (68%), Gaps = 22/340 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++REG +
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKTLRLTVRREGKV 59

Query: 146 YEMSFINGILD------------NPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTL 192
           +++ F  GI              +P+ + G   +  GTEV FLP ++IF+   +F+YD L
Sbjct: 60  HQIEFKKGIPQDRLIEVRDGFEISPMKIVGDT-DKRGTEVHFLPDTEIFTSNSEFHYDIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I L+D+R+ +       + GG+  F  ++++ K  L  +    QG
Sbjct: 119 AKRLRELSFLNNGVKIRLVDERNNKE--DNFSFSGGVRGFFEFINKGKTALNPNIFYAQG 176

Query: 253 SR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +      N+  +++M+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 DKLSDQNTNVGXEVSMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR  VE  V   L+ W
Sbjct: 237 ELAKKAKVDVTGDDMREGLACVISVKVPEPKFSSQTKDKLVSSEVRGPVEEIVASKLTDW 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           L E+P++AKII  K+++A+  R+AAR+AR++TRRKGVLD 
Sbjct: 297 LLENPVDAKIICGKIVEAARAREAARKAREMTRRKGVLDG 336


>gi|207678279|gb|ACI25153.1| DNA gyrase B [Phaeobacter sp. M8-3.1]
          Length = 338

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 202/338 (59%), Positives = 259/338 (76%)

Query: 136 KLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHR 195
           +LRI R+G  +   F  G     L V G  G+ TGTEV FL S+D FS  +++++TL+ R
Sbjct: 1   ELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNLEYSFETLEKR 60

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LREL+FLNS V+I LID+R  E  E+ +FY+GG++ FV YLDR K P+M++PI I G +D
Sbjct: 61  LRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPIYITGDKD 120

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           +I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR I +Y + S  +KK+K 
Sbjct: 121 DIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKKEKV 180

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           S  GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ L+ W EE+P +A
Sbjct: 181 SFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAEWFEENPNQA 240

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K IV K+++A++ R+AAR+AR+LTRRK  +D+  L GKL DCSE+DP K+E+FLVEGDSA
Sbjct: 241 KQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTEVFLVEGDSA 300

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           GGSA+ GR R  QAILPLRGKILNVE ARFD+ML SQE
Sbjct: 301 GGSAQTGRDRMTQAILPLRGKILNVEPARFDRMLGSQE 338


>gi|238768284|dbj|BAH66705.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 338

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 253/340 (74%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEEARFDKMISSQEV 338


>gi|30793738|gb|AAM52931.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 321

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 240/323 (74%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARPREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|159576564|dbj|BAF92830.1| DNA gyrase subunit B [Halomonas eurihalina]
          Length = 324

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 177/327 (54%), Positives = 227/327 (69%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALS  L+L I R+G ++E  + +G    PL V G     TG+ V
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELRLTIWRQGQVHEQLYRHGEAVAPLSVVG-TTEQTGSRV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS + F   +F+YD L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV
Sbjct: 60  HFRPSPETFHNIEFHYDILAKRLRELSFLNSGVAIRLTDERTGKE--ELFHYEGGLRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K  L           D + +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R
Sbjct: 118 DHLNTNKTVLNPVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR +  Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 ASLTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRQFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP  SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|106895924|gb|ABF82650.1| DNA gyrase subunit B [Aeromonas sp. MDC71]
          Length = 333

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 189/335 (56%), Positives = 247/335 (73%), Gaps = 2/335 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRL 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R          Y+GGI+AFV  L+++K P+          +D 
Sbjct: 61  RELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEDLNQNKTPIHPKVFHFSTEQDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 119 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + LS +L E+P +AK
Sbjct: 179 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEFLLENPSDAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 239 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 298

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SS
Sbjct: 299 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 333


>gi|156536668|gb|ABU80438.1| gyrase B [Photorhabdus sp. H3107]
          Length = 337

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 186/339 (54%), Positives = 250/339 (73%), Gaps = 4/339 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185
              ALS  L+L I+R+G ++E ++  G+  +PL V G     TGT V F PS D F +  
Sbjct: 2   CCYALSEKLELIIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRNNT 60

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F +D L  RLRELSFLNS V I L+DKR+    E    Y+GGI+AFV +L+++K P+  
Sbjct: 61  EFQHDILAKRLRELSFLNSGVSIRLLDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHP 118

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +       +D I ++ A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++
Sbjct: 119 NVFYFSTEKDGIGVEAALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 178

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L 
Sbjct: 179 KEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 238

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L E+P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 239 EYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 298

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKIL VE+AR
Sbjct: 299 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILYVEKAR 337


>gi|261488474|emb|CAU94912.1| DNA gyrase subunit B [Aquabacterium commune]
          Length = 341

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 173/345 (50%), Positives = 238/345 (68%), Gaps = 22/345 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VN LS WL+L ++R+G  
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWLRLTVRRDGKT 59

Query: 146 YEMSFINGILD------------NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTL 192
           + + F  G+              +P+ +TG   +  GTEV FLP  +IF   + ++YD L
Sbjct: 60  HFIEFKQGVPQDRVIEIRDGVETSPMRITGDT-DKRGTEVHFLPDVEIFKENNEYHYDIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I LID+R+ +       Y GG++ FV ++++ K  L  +    QG
Sbjct: 119 AKRLRELSFLNNGVKIRLIDERNNKE--DNFAYAGGVKGFVEFINKGKATLNPNIFHAQG 176

Query: 253 SR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +      N+ +++AM+WN+ Y+E+VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 DKLSDQGTNVGVEVAMQWNESYNESVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR+ VE  V+  L+ W
Sbjct: 237 ELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDW 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           L E+P++AKII  K+++A+  R+AAR+AR++TRRKGVLD   LPG
Sbjct: 297 LLENPIDAKIICGKIVEAARAREAARKAREMTRRKGVLDGLGLPG 341


>gi|220680590|dbj|BAH10784.1| DNA gyrase subunit B [Nocardia yamanashiensis]
          Length = 399

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 161/402 (40%), Positives = 234/402 (58%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +   G  +   + +      L V G     TGT + F    +IF    +N
Sbjct: 1   NALSTRLEAEVDHAGYHWTQEYKDAKP-GKL-VQGEPTKRTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D R  E                               
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDHRVSEGDITDEVVSDTAEAPKHLDENAPAAEPKVKT 118

Query: 223 --MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y GG+E +V +++R K P+  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDYVKHINRTKTPIHNSIVGFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+ + ++ GDD REG  +++S+K+ DP+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIREGLAAIVSVKVADPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +++V+  V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTDVKGFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 EKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 399


>gi|261488470|emb|CAU94910.1| DNA gyrase subunit B [Roseateles aquatilis]
          Length = 339

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 171/342 (50%), Positives = 235/342 (68%), Gaps = 22/342 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SA+E+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++REG I
Sbjct: 1   DKH-EPKRSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKTLRLTVRREGKI 59

Query: 146 YEMSFINGILD------------NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTL 192
           +++ F  GI              +P+ + G   +  GTEV FLP ++IF    +F+YD L
Sbjct: 60  HQLEFKKGIPQDRVIEVRDGVETSPMKIVGET-DKRGTEVHFLPDTEIFTQNSEFHYDIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I L+D+R+ +       + GG+  FV ++++ K  L  +    QG
Sbjct: 119 AKRLRELSFLNNGVKIRLVDERNNKE--DNFAFAGGVRGFVEFINKGKTALHPNIFHAQG 176

Query: 253 SR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +      NI ++++M+WNDG++ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 DKLSDQNTNIGVEVSMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  + GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR  VE  V   L+ W
Sbjct: 237 ELAKKAKVDIAGDDMREGLACVISVKVPEPKFSSQTKDKLVSSEVRGPVEDVVASKLTDW 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           L E+P++AKI+  K++DA+  R+AAR+AR++TRRKGVLD   
Sbjct: 297 LLENPIDAKIVCGKIIDAARAREAARKAREMTRRKGVLDGMG 338


>gi|210062262|gb|ACJ06180.1| GyrB [Aeromonas caviae]
          Length = 331

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 190/334 (56%), Positives = 247/334 (73%), Gaps = 3/334 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYE 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+       
Sbjct: 60  ILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
              +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   S
Sbjct: 118 TTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYS 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E
Sbjct: 178 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 297

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           EGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 298 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 331


>gi|195926960|dbj|BAG68367.1| gyrase B [Campylobacter curvus]
          Length = 339

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 160/344 (46%), Positives = 221/344 (64%), Gaps = 5/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L L IKR+GN+Y   F  GI    L       N TGT+V F     IF V +
Sbjct: 1   VVNALSKKLILTIKRDGNVYRQEFQKGIPVTALETI-KTTNRTGTQVEFFVDDSIFEVTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ + L  R REL++LN  + I+  D+R           +GG+E+FV+ +  +K   +  
Sbjct: 60  FDREILAKRFRELAYLNPKITINFKDQRDGFNESYHF--EGGLESFVTDM--NKAQAVSK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  +++ +D A+ +ND Y EN+L F NNI   DGGTH +G R+ LTR IT+Y+  
Sbjct: 116 AVSFSGGEEDVMVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYIAA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   ++    + GDD REG  +V+S+K+P+P+F  QTK KL SS V+ +V+  V D LS 
Sbjct: 176 NAAVREKDTKITGDDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFDVLSK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EA+ I+ K L A+  R+AA++ARDLTR+K  L + +LPGKLADC  +D   SE
Sbjct: 236 YFEENPIEARAIMNKALMAARGREAAKKARDLTRKKEGLSVGTLPGKLADCQSKDASISE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           L+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE++R DK+L 
Sbjct: 296 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILK 339


>gi|195926968|dbj|BAG68371.1| gyrase B [Campylobacter hyointestinalis]
          Length = 340

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 156/345 (45%), Positives = 217/345 (62%), Gaps = 6/345 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L L IKR+G ++   F  GI  + L V     N TGT V F P   IF +  
Sbjct: 1   VVNALSKKLVLNIKRDGKLHRQEFAEGIPQSDLEVI-KTTNRTGTSVEFWPDDTIFEITK 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+ + L  R +EL++LN  + I+  D+R            GG+E+FV+ +  +K   +  
Sbjct: 60  FDREILAKRFKELAYLNPKITINFKDQRDGFKESYHF--DGGLESFVTDM--NKSNPVSK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  D++ +D A+ +ND Y EN+L F NNI   DGGTH +G R+ LTR IT+Y+  
Sbjct: 116 AVSFSGGEDDVIVDFALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRAITNYIAA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +V+S+K+P+P+F  QTK KL SS V+ + +    + L  
Sbjct: 176 NAAAREKDTKITGDDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIGQKMTFEVLCK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDPKKS 425
           + EE+P EAK I+ K L A+  R+AA++ARDLTR+K  L+     PGKLADC  +DP +S
Sbjct: 236 YFEENPNEAKAIMNKALMAARGREAAKKARDLTRKKDSLNSVGTLPGKLADCQSKDPSES 295

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L 
Sbjct: 296 EIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILK 340


>gi|146328109|emb|CAM97354.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 335

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 195/337 (57%), Positives = 253/337 (75%), Gaps = 3/337 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 2   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRL 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 61  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 119 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 179 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 239 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 298

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE
Sbjct: 299 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQE 335


>gi|209973186|gb|ACJ03856.1| DNA gyrase B subunit [Leptospira interrogans]
          Length = 145

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V DNGRGIP 
Sbjct: 1   KRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVKDNGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L++ + ++G +
Sbjct: 60  DIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEVEVHQKGKV 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTE 172
           Y   +  G+  + + + G +  ++GT 
Sbjct: 120 YTQKYEKGVPVSSVQIQGDSS-ESGTM 145


>gi|238768378|dbj|BAH66752.1| DNA gyrase subunit beta [Aeromonas sp. MU2]
          Length = 338

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHSKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|156536664|gb|ABU80436.1| gyrase B [Photorhabdus temperata]
          Length = 337

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 191/340 (56%), Positives = 256/340 (75%), Gaps = 4/340 (1%)

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDT 191
             L+L I+R+G ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D 
Sbjct: 1   EKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFSNNTEFQHDI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I L+DK +    E    YKGGI+AFV +L+++K P+  +     
Sbjct: 60  LAKRLRELSFLNSGVSIRLLDKLT--NIEDHFHYKGGIKAFVEFLNKNKTPIHPNVFYFS 117

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
             +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +K
Sbjct: 118 TEKDSIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNK 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+
Sbjct: 178 KSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLEN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P +AK +V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVE
Sbjct: 238 PNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS
Sbjct: 298 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 337


>gi|209973184|gb|ACJ03855.1| DNA gyrase B subunit [Leptospira interrogans]
          Length = 145

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 73/147 (49%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
           KRP MYIG T  E+GLH M+YEV+DN++DE++ G+   I +++  D    V DNGRGIP 
Sbjct: 1   KRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVKDNGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+H ++ IS  EV+MT LHAGGKF   +YKVSGGLHGVGVSVVNALS +L++ + ++G +
Sbjct: 60  DIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEVEVHQKGKV 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTE 172
           Y   +  GI  + + + G +  ++GT 
Sbjct: 120 YTQKYERGIPVSSVQIQGDSS-ESGTM 145


>gi|164385322|gb|AAX89534.2| DNA gyrase subunit B [Vibrio tapetis]
          Length = 316

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 174/318 (54%), Positives = 232/318 (72%), Gaps = 3/318 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVS VNALS  + L I R+G+ ++ ++ +G  D PL VTG  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSXVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT + F PS + F+   F+Y+ J  RLRELSFLNS V I LID+R  E +     Y
Sbjct: 61  E-KTGTIIRFWPSEETFTNVHFHYEIJAKRLRELSFLNSGVSIKLIDER-EEDKMDHFCY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GG +AFV YL+ +K P++Q        R++ IS+++AM+WNDGY EN+ CFTNNIPQ+D
Sbjct: 119 EGGTQAFVDYLNTNKTPIIQKVFHFDYEREDGISVEVAMQWNDGYQENIFCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK
Sbjct: 179 GGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VES + + LS +L E P EAKI+  K++DA+  RDAAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVESAMGEKLSEFLIEXPSEAKIVCSKIIDAARARDAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDP 422
           LD+A LPGKL  C E+DP
Sbjct: 299 LDLAGLPGKLXXCQEKDP 316


>gi|164456767|dbj|BAF97876.1| gyrase B subunit [Vibrio algosus]
          Length = 282

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 152/284 (53%), Positives = 204/284 (71%), Gaps = 3/284 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     Y+GG
Sbjct: 60  TGTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFEYEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           I+AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG 
Sbjct: 119 IQAFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGA 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KL
Sbjct: 179 HLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           VSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDA
Sbjct: 239 VSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDA 282


>gi|309804841|ref|ZP_07698903.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165780|gb|EFO68001.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 09V1-c]
          Length = 240

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 103/213 (48%), Positives = 140/213 (65%), Gaps = 3/213 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG+T    GLHH+++E++DN+IDE L G+A  
Sbjct: 15  EKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTS-IQGLHHLVWEIIDNSIDEKLAGFATK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+ K+ G SA E + T LHAGGKF    YKVSGGLHGV
Sbjct: 74  IEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y + F +G ++  +   G       GT V F P  DIF
Sbjct: 134 GASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPDPDIF 193

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKR 214
           +      D  L++R+REL+FLN  ++++  DKR
Sbjct: 194 TETTVFDDRILKNRIRELAFLNKGLKLTFTDKR 226


>gi|165968982|gb|ABY76047.1| topoisomerase IV subunit ParE [Waddlia chondrophila]
          Length = 478

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 145/486 (29%), Positives = 224/486 (46%), Gaps = 37/486 (7%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           +++ G K+N   ++ S GL+GVG   VNALSS   +R  REG   E  F  G L      
Sbjct: 23  QINTGAKYNDDVFQFSVGLNGVGTKAVNALSSRFLVRSHREGKFVEAEFSKGRLQKD--K 80

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G      GT V F+P S+IF    F+ + +  RL    +LN+ + I+   +R       
Sbjct: 81  KGKTQEKDGTYVEFIPDSEIFKSFKFDDEYIVKRLWNYVYLNTGLTINYNGERIRSDH-- 138

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                 G+   ++  +  ++ L +             ++ A      Y E+   F N   
Sbjct: 139 ------GLLDLLNQ-EVSEEGLYEPLHYKSKQ-----LEFAFLHTQSYGESYFSFVNGQY 186

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTHLS  R  L + +  Y +K+           G D REG    ++I++ DP F S
Sbjct: 187 TSDGGTHLSAFREGLLKGVNEYAKKN---------FQGVDVREGVFGTVAIRIQDPVFES 237

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E+R+ +   V + +   L +HP  AK I++++     VR     A     +
Sbjct: 238 QTKNKLGNTEIRAPLVQEVKEAVVNLLFKHPSTAKKIIERIAFNEKVRK-ELSAVKKEAK 296

Query: 402 KGVLDIASLPGKLADCS------ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +    I+    KL D         +  +K+ +FL EGDSA  S    R    QA+  LRG
Sbjct: 297 EKQKKISFKIPKLRDSKYHFGDGSKYAEKTMIFLTEGDSASASIVSSRDPLTQAVFSLRG 356

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K LNV   + D++  ++E+  +++AL         DI+ LRY K+++ TDADVDG HIR 
Sbjct: 357 KPLNVFGMKMDQLYKNEEMFNVMSALNI-----EEDISNLRYEKVVLATDADVDGMHIRN 411

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LL+T F      L+ NG LYI++ PL+ +   +   Y   E+  E  +       EI  F
Sbjct: 412 LLITLFLTYFEGLVLNGHLYILETPLFKVRNKEKTIYCYSEKEKEKAVKELKKGVEITRF 471

Query: 576 CDSKGV 581
                +
Sbjct: 472 KGLGEI 477


>gi|89143172|emb|CAJ57483.1| DNA gyrase subunit B [Microbacterium aurantiacum]
          Length = 376

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 157/377 (41%), Positives = 230/377 (61%), Gaps = 21/377 (5%)

Query: 130 ALSSWLKLRIKREGNIYEMSF-INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           ALSS L++ +KR+G+++  S+   G+   PL   G    +TGT +TF P   IF    F+
Sbjct: 1   ALSSRLEVEVKRQGSVWRQSYATGGVPQAPLAK-GEDSTETGTTITFWPDDTIFETVVFD 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSP---------------EPREITMFYKGGIEAFV 233
           YDTL+ R ++++FLN  ++ISL D+R                 +PR  +  Y+ G+  +V
Sbjct: 60  YDTLRTRFQQMAFLNKGLRISLRDERPEGLVDIDGLADADAAPQPRSDSFLYERGLVDYV 119

Query: 234 SY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            +    RH + +    I ++       I+++LAM+W   Y ENV  F N I   +GGTH 
Sbjct: 120 EHLNRVRHAEVVNDEIIEVESEDTERKIALELAMQWTTSYTENVFTFANTINTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALT  +  Y       K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL +
Sbjct: 180 EGFRAALTTLVNRYARAQNLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +E ++ V+  V D L  W + +P++AK +++K +DA+  R AAR+AR+  RRK V + A+
Sbjct: 240 TEAKAFVQKVVGDKLGDWFDRNPVQAKNVIRKAIDAASARMAARKARETARRKSVFESAA 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           +P KL DC+ +DP  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L
Sbjct: 300 MPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKAL 359

Query: 470 SSQEIGTLITALGTGIG 486
           S++E+  +I A GTGIG
Sbjct: 360 SNKEVQAMIQAFGTGIG 376


>gi|156946268|gb|ABU98322.1| DNA gyrase subunit beta [Alcanivorax venustensis]
          Length = 352

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 205/355 (57%), Positives = 266/355 (74%), Gaps = 3/355 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  LKL I+R GN+YE S+ +G+ + PL         TGT + F PSS+ F+  +F+Y
Sbjct: 1   ALSESLKLTIRRHGNVYEQSYRHGVPEKPLDTV-GTTGSTGTAIHFRPSSETFTNIEFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V+I L D+R+ +       Y+GG+ AFV+YL+R K  L +    
Sbjct: 60  DILAKRLRELSFLNSGVRIHLKDERTGDE--DIFEYEGGLSAFVTYLNRSKTALNEVFHF 117

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                D I++++AM WND Y EN+ CFTNNIPQ+DGG HL+G R+ALTR + +Y+++   
Sbjct: 118 QFDREDGIAVEVAMHWNDSYQENIFCFTNNIPQRDGGAHLAGFRAALTRSLNNYMDREGF 177

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K++K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +++    +L 
Sbjct: 178 LKREKANPTGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMSEKFQDYLL 237

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           EHP EAK IV+K++DA+  RDAAR+ARD+TRRKG LDIA LPGKLADC E+DP  SEL++
Sbjct: 238 EHPQEAKQIVQKIIDAARARDAARKARDMTRRKGALDIAGLPGKLADCQEKDPALSELYI 297

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG G
Sbjct: 298 VEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCG 352


>gi|261488454|emb|CAU94902.1| DNA gyrase subunit B [Pelomonas aquatica]
          Length = 342

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 173/344 (50%), Positives = 235/344 (68%), Gaps = 22/344 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VN LS WL+L +++ G +
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWLRLTVRQGGKV 59

Query: 146 YEMSFINGILDN------------PLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTL 192
           + + F  GI  N            P+ V G   +  GTEV FLP ++IF   + ++YD L
Sbjct: 60  HYIEFAKGIPQNGESVMVDGAETRPMKVIGDT-DKRGTEVHFLPDTEIFQQNNDYHYDIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I L+D+R+ +       Y GG++ FV ++++ K  L  +     G
Sbjct: 119 AKRLRELSFLNNGVKIRLVDERNNKE--DNFAYAGGVKGFVEFINKGKTTLHPNIFHAVG 176

Query: 253 SRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +       + +++AM+WNDG++ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 EKQSDQGTTVGVEVAMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR+ VE  V+  L+ +
Sbjct: 237 ELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDY 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           L E+PL+AK I  K+LDA+  R+AAR+AR++TRRKGVLD   LP
Sbjct: 297 LLENPLDAKTICGKILDAARAREAARKAREMTRRKGVLDGLGLP 340


>gi|238768460|dbj|BAH66793.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 198/340 (58%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYYLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|193788057|dbj|BAG50529.1| DNA gyrase subunit B [bacterium GMW-27]
          Length = 347

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 202/350 (57%), Positives = 267/350 (76%), Gaps = 4/350 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G +YE  + +G+ D P+   G A   TGTE+ F PS D FS  +F+++ L  R+REL
Sbjct: 1   RRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSDVEFHFEILAKRVREL 59

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-IS 258
           SFLNS V I L+D+R  +       Y+GGI AFV YL+R+K P+ +        R++ I+
Sbjct: 60  SFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQEREDGIT 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY+E    +KK K S  
Sbjct: 118 VEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK+I
Sbjct: 178 GDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLI 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE+++VEGDSAGGS
Sbjct: 238 VGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGS 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           AKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D
Sbjct: 298 AKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 347


>gi|533332|dbj|BAA04763.1| DNA gyrase subunit B [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 391

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 157/397 (39%), Positives = 231/397 (58%), Gaps = 11/397 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDT 169
             +YK SGGLHGVG SV NALS   K  I R+  I+E+ F N G L+ PL    +    T
Sbjct: 1   STAYKSSGGLHGVGSSVTNALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFI-NTTYKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + FLP   IFS   FN+  +  RL+E + LNS ++I+L D  S    E     + G+
Sbjct: 60  GTTINFLPDDTIFSNAKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQF--QDGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV  L   K P+    I I     NI +++A+++ +  +E +L F NN+   DGGTHL
Sbjct: 118 VEFVKELVDDKTPVT-DIITINNESKNIIVEIALQYTEDDNEIILGFANNVKTIDGGTHL 176

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKL 347
            G +S L R I  Y +     K DK  +  +D REG  +++++K+P+    +  QTK KL
Sbjct: 177 VGFKSGLIRAINDYAKDQKILK-DKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKL 235

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVL 405
            +S+ ++VVE  V + +S WL E+ + A  +++  L+A   R AA++AR   +  +    
Sbjct: 236 GTSDAKTVVEQIVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAVKSVKGKKN 295

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
               + GKL     +  + +EL+LVEGDSAGGSAK GR R  QAILPLRGK++N E+A+ 
Sbjct: 296 VNKLMLGKLTPAQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKL 355

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
             +L ++EI ++I A+G G+G+D FDI+ + Y KIII
Sbjct: 356 VDLLKNEEIQSIINAIGAGVGKD-FDISDINYGKIII 391


>gi|159576574|dbj|BAF92835.1| DNA gyrase subunit B [Halomonas variabilis]
          Length = 324

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 182/327 (55%), Positives = 231/327 (70%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALS  LKL I R+G ++E  + +G+ + PL V G+    +GT V
Sbjct: 1   YKVFGGLHGVGVSVVNALSEELKLTIWRQGKVHEQIYRHGVPEAPLAVVGNTE-KSGTLV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS   F    F+Y+ L  RLRELSFLNS V I LID+RS +       Y+GG++AFV
Sbjct: 60  RFKPSPLTFGNIAFHYEILAKRLRELSFLNSGVAIRLIDERSGKE--ELFHYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K  L           D I +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R
Sbjct: 118 DHLNTNKAALNPVFHFEMEREDGIGVEVAMQWNDAFSENIFCYTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY+E     KK K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AALTRTLNSYIEAEGLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRLFSEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP  SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|309809774|ref|ZP_07703628.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308169953|gb|EFO71992.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 240

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 102/212 (48%), Positives = 139/212 (65%), Gaps = 3/212 (1%)

Query: 4   NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63
             +   Y+A  IQ+L GL+AV+KRP MYIG+T    GLHH+++E++DN+IDE L G+A  
Sbjct: 15  EKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTS-IQGLHHLVWEIIDNSIDEKLAGFATK 73

Query: 64  ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123
           I +T+N DGS TV D+GRGIP D+ K+ G SA E + T LHAGGKF    YKVSGGLHGV
Sbjct: 74  IEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           G SVVNALS+ L + + R+G  Y + F +G ++  +   G       GT V F P  DIF
Sbjct: 134 GASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPDPDIF 193

Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDK 213
           +      D  L++R+REL+FLN  ++++  DK
Sbjct: 194 TETTVFDDRILKNRIRELAFLNKGLKLTFTDK 225


>gi|268574422|ref|XP_002642188.1| Hypothetical protein CBG18156 [Caenorhabditis briggsae]
          Length = 1206

 Score =  269 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 130/689 (18%), Positives = 243/689 (35%), Gaps = 69/689 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT-----------------------DGESGLHHMIYEV 48
           A   +     + V  RP  YIG                             GL  +  E+
Sbjct: 43  AAKYEKKSPTEHVLLRPDTYIGGVAMRESQFVWIRNSETRRMFTKEVSYPPGLLKIFDEI 102

Query: 49  LDNAIDE-SLEGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D  S +   + + V L+ + S   V +NG  +P ++H  EG+    ++   L   
Sbjct: 103 LVNAADNKSRDPSMNRLEVWLDRETSRIAVWNNGSALPVEIHPTEGVYVPTLVFGSLFTS 162

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGS 164
             ++    +  GG +G G  + N  S    +     R    ++  + + + +    V   
Sbjct: 163 SNYDDNEIRTVGGRNGYGAKLCNIFSDEFVVEAVDSRTKRKFKQRWYHNMREFDEAVIED 222

Query: 165 AGND---TGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEP 218
             N      T+V F+P    F +   + D +     R+ E++    S             
Sbjct: 223 LTNQQLSDYTKVEFVPDLKRFHIDKLSEDIIDLIGKRVFEVAATLPSD------------ 270

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ--GSRDNISIDLAMRWNDG---YHENV 273
            ++    +           R       S        SR ++ +     ++         V
Sbjct: 271 VQVFFNGQKCDVDGFEDYVRMFNDSNPSSFLFLHPTSRWHVGVAKRNTFSGEGIVTLPKV 330

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           + F NNI  + GG+H+  +   +   +   V+         +SV     +   +  ++  
Sbjct: 331 VSFVNNINTEKGGSHVDYVMDKIVNVMKPLVDSR--LGDPSKSVKPATIKNNISLFINCL 388

Query: 334 MPDPRFSSQTKEKLVS-SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           + +P F SQTKE + +  +         ++ +S W E   L  +I+ + +        + 
Sbjct: 389 IENPSFESQTKETVTTKPKQFGSSFDCDSEKISKWAETSGLLDEIVDEVLNTKKKKISSK 448

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQA 449
           R      R    L+ A   G          +K  L L EGDSA   A  G     R+   
Sbjct: 449 RANSSSVRDIVKLEDAEWAGVP-----GKSEKCTLILTEGDSAKALALAGLEILGRQTYG 503

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           + PL+GK++NV      +   ++EIG ++  LG    + +     +RY +++I+TD D D
Sbjct: 504 VFPLKGKLVNVSNLDDIRASKNEEIGKIVRILGLNFNEPTPSKESIRYGRLLILTDQDED 563

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGF-LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           G+HI+ L++ F  +  PSLI +G  +   + PL    +G  +           +      
Sbjct: 564 GSHIKGLVINFIHKFWPSLIQSGEFIKSFRTPLLKAKKGNEVVPFFSLNEYRKWAETIEG 623

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
             +++ +       S        +    +D    +F         +   I   F+ E   
Sbjct: 624 KWKVKYYKGLGTSTSNEA----REYFRNLDHHTVNFNYAGSS---DDDAIRMAFDREKSD 676

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSI 657
           E    +            EK+E ++  SI
Sbjct: 677 ERKRWIRGSDEVSTTEDVEKTELNYEESI 705


>gi|238768458|dbj|BAH66792.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 197/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYYLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|93277214|gb|ABF06425.1| gyrase B [Streptomyces sp. M3]
          Length = 376

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 160/377 (42%), Positives = 232/377 (61%), Gaps = 20/377 (5%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + +K +G  +   +  G+   PL       ++ GT VTF    DIF   +
Sbjct: 1   VVNALSTKVAVEVKTDGYRWTQDYKLGVPTAPLAR-HEPTDEHGTSVTFWADPDIFETTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230
           ++++TL  R +E++FLN  ++I L D+R                  E + +   Y+GGI 
Sbjct: 60  YSFETLSRRFQEMAFLNKGLRIRLTDERESAKATSGADEAGADEKAEVKSVDYHYEGGIV 119

Query: 231 AFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            FV Y   R    +  + I ++    +  +S+++AM+WN  Y E V  F N I   +GGT
Sbjct: 120 DFVKYLNSRKGDVVHPTVIDLEAEDKDKLLSLEVAMQWNSSYTEGVYSFANIIHTHEGGT 179

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  QTK KL
Sbjct: 180 HEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++EV++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+ARDLTRRKG+L+ 
Sbjct: 240 GNTEVKTFVQKVVYEHLADWLDRNPNEAADIIRKGIQAATARVAARKARDLTRRKGLLET 299

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+AR DK
Sbjct: 300 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKARIDK 359

Query: 468 MLSSQEIGTLITALGTG 484
           +L +QEI  LI+A GTG
Sbjct: 360 ILQNQEIQALISAFGTG 376


>gi|222831890|gb|EEE70367.1| predicted protein [Populus trichocarpa]
          Length = 252

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 118/252 (46%), Gaps = 7/252 (2%)

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
           ++ + +N +L        ++   ++   L   I +   + K+I     ++ +  ++  + 
Sbjct: 1   MQQFELNLALEGSSLYVNENAPAMNGIALEKLISEYNSVQKMISHLSFHYPEILLKSLIY 60

Query: 619 SGVFNCESD--QEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGV 671
                 E    +      A  L N L        + K    ++   +  ++++     G+
Sbjct: 61  QKALTNEMMTDESAVDFWAKSLVNILTDKKISGSSYKYRIVFNNERHLYEVVIIIRTHGI 120

Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR 731
           ++ + L    +            N+++        +     +  ++     ++ +    R
Sbjct: 121 EKNYFLNFEFLNGTEYSRIVKLGNQLQGLLEKGAYVSRGERQQSVSSFEQAIEWLTKESR 180

Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791
           +G+ +QRYKGLGEMN+ QL+ETT++P+ R++L+V I DA  AD LF+ LMGDEVEPRREF
Sbjct: 181 RGLIIQRYKGLGEMNSDQLFETTMDPNKRTMLKVSIKDAVAADQLFTTLMGDEVEPRREF 240

Query: 792 IQENSLPSALDI 803
           I+ N+L + LDI
Sbjct: 241 IEMNALRANLDI 252


>gi|302746255|gb|ADL62718.1| GyrB [Morganella sp. RP-42]
          Length = 347

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 200/350 (57%), Positives = 258/350 (73%), Gaps = 4/350 (1%)

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDT 191
             L+L I+R+G ++E  + +G   + L V G   + TGT V F PS D F    +F YD 
Sbjct: 1   EKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTGTRVRFWPSMDTFKGETEFQYDI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I LIDKR  +       Y+GGI+AFV YL R K  +  +     
Sbjct: 60  LAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYEGGIKAFVEYLSRAKTSIHNNVFYFS 117

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
             +D+I ++++M+WND + ENV CFTNNIPQ+DGG HL+G R+ +T  + SY+EK   +K
Sbjct: 118 TEKDDIGVEISMQWNDSFQENVYCFTNNIPQRDGGAHLAGFRAVMTCTLNSYIEKEGLNK 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ LS +L+E+
Sbjct: 178 KSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLSEYLDEN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P + KIIV K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  SEL+LVE
Sbjct: 238 PNDTKIIVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAFSELYLVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           GDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML SQE+ TLITAL
Sbjct: 298 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLGSQEVATLITAL 347


>gi|309357377|emb|CAP35657.2| hypothetical protein CBG_18156 [Caenorhabditis briggsae AF16]
          Length = 1207

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 129/691 (18%), Positives = 244/691 (35%), Gaps = 69/691 (9%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT-----------------------DGESGLHHMIYEV 48
           A   +     + V  RP  YIG                             GL  +  E+
Sbjct: 43  AAKYEKKSPTEHVLLRPDTYIGGVAMRESQFVWIRNSETRRMFTKEVSYPPGLLKIFDEI 102

Query: 49  LDNAIDE-SLEGYADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAG 106
           L NA D  S +   + + V L+ + S   V +NG  +P ++H  EG+    ++   L   
Sbjct: 103 LVNAADNKSRDPSMNRLEVWLDRETSRIAVWNNGSALPVEIHPTEGVYVPTLVFGSLFTS 162

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNPLVVTGS 164
             ++    +  GG +G G  + N  S    +     R    ++  + + + +    V   
Sbjct: 163 SNYDDNEIRTVGGRNGYGAKLCNIFSDEFVVEAVDSRTKRKFKQRWYHNMREFDEAVIED 222

Query: 165 AGND---TGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEP 218
             N      T+V F+P    F +   + D +     R+ E++    S             
Sbjct: 223 LTNQQLSDYTKVEFVPDLKRFHIDKLSEDIIDLIGKRVFEVAATLPSD------------ 270

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ--GSRDNISIDLAMRWNDG---YHENV 273
            ++    +           R       S        SR ++ +     ++         V
Sbjct: 271 VQVFFNGQKCDVDGFEDYVRMFNDSNPSSFLFLHPTSRWHVGVAKRNTFSGEGIVTLPKV 330

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           + F NNI  + GG+H+  +   +   +   V+         +SV     +   +  ++  
Sbjct: 331 VSFVNNINTEKGGSHVDYVMDKIVNVMKPLVDSR--LGDPSKSVKPATIKNNISLFINCL 388

Query: 334 MPDPRFSSQTKEKLVS-SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           + +P F SQTKE + +  +         ++ +S W E   L  +I+ + +        + 
Sbjct: 389 IENPSFESQTKETVTTKPKQFGSSFDCDSEKISKWAETSGLLDEIVDEVLNTKKKKISSK 448

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQA 449
           R      R    L+ A   G          +K  L L EGDSA   A  G     R+   
Sbjct: 449 RANSSSVRDIVKLEDAEWAGVP-----GKSEKCTLILTEGDSAKALALAGLEILGRQTYG 503

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           + PL+GK++NV      +   ++EIG ++  LG    + +     +RY +++I+TD D D
Sbjct: 504 VFPLKGKLVNVSNLDDIRASKNEEIGKIVRILGLNFNEPTPSKESIRYGRLLILTDQDED 563

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGF-LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           G+HI+ L++ F  +  PSLI +G  +   + PL    +G  +           +      
Sbjct: 564 GSHIKGLVINFIHKFWPSLIQSGEFIKSFRTPLLKAKKGNEVVPFFSLNEYRKWAETIEG 623

Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
             +++ +       S        +    +D    +F         +   I   F+ E   
Sbjct: 624 KWKVKYYKGLGTSTSNEA----REYFRNLDHHTVNFNYAGSS---DDDAIRMAFDREKSD 676

Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINN 659
           E    +            EK+E ++   +N+
Sbjct: 677 ERKRWIRGSDEVSTTEDVEKTELNYEEFVNS 707


>gi|220680534|dbj|BAH10756.1| DNA gyrase subunit B [Nocardia inohanensis]
          Length = 399

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 160/402 (39%), Positives = 234/402 (58%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  +   G  +   + +      L   G A   TGT + F    +IF    +N
Sbjct: 1   NALSTRLEAEVDTAGFHWTQEYKDAKP-GKL-FQGEATKRTGTTIRFWADPEIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------------- 222
           ++T+  RL+E++FLN  + I+L D+R  E                               
Sbjct: 59  FETVARRLQEMAFLNKGLTITLTDQRVSEGDITDEVVSDTAEAPKHLDENAPVAEPKVKT 118

Query: 223 --MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
               Y GG+E +V +++R K  +  S +   G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDYVKHINRTKTAIHNSIVGFTGKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+ + ++ GDD REG  +++S+K+ DP+F 
Sbjct: 179 NTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIREGLAAIVSVKVADPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL +++V+  V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTDVKGFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP KSE+++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 EKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 399


>gi|4996774|dbj|BAA78432.1| subunit B protein of DNA gyrase [bacterium rJ1]
          Length = 216

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/218 (48%), Positives = 141/218 (64%), Gaps = 20/218 (9%)

Query: 35  TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKE 90
           T   +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V+DNGRGIPT    D   E
Sbjct: 1   TSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSVSVTDNGRGIPTGVKMDDKHE 60

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
              SA+E+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS  L+L ++REG ++ + F
Sbjct: 61  PKRSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRREGKVHVLEF 120

Query: 151 IN------------GILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLR 197
                         G+  +P+ VTG   +  GTEV FLP +DIF    DF+Y+ L  RLR
Sbjct: 121 SRGFVQNRLIETVDGVEVSPMKVTGDT-DKRGTEVHFLPDTDIFKENSDFHYEILAKRLR 179

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           ELSFLN+ V+I L D+R+ +         GG+  FV +
Sbjct: 180 ELSFLNNGVRIRLKDERTGKE--DDFSGAGGVRGFVEF 215


>gi|164456759|dbj|BAF97872.1| gyrase B subunit [Salinivibrio costicola subsp. vallismortis]
          Length = 279

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 150/281 (53%), Positives = 203/281 (72%), Gaps = 3/281 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L+L I R+G+I++++F +G    PL V G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELTIWRDGHIHQLNFSHGEPQGPLAVIGDTE-QT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + F PS + FS  +FNYD L  RLRELSFLNS V I L+D+R  E +     Y+GGI
Sbjct: 60  GTRIRFWPSEETFSDINFNYDILAKRLRELSFLNSGVSIKLVDER-EEDKADHFKYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFV +L+  K  +  S    + +R++ +S+++AM+WNDGY EN+ CFTNNIPQ+DGGTH
Sbjct: 119 RAFVEHLNNKKTAIHPSVFHFEHTREDGVSVEVAMQWNDGYQENIYCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           SSEV+S VES + + LS +L EHP +AK++  K++DA+  R
Sbjct: 239 SSEVKSAVESAMGEHLSDFLIEHPADAKVVCTKIIDAARAR 279


>gi|165882833|gb|ABY71628.1| DNA gyrase B subunit [Spirobacillus cienkowskii]
          Length = 359

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 167/357 (46%), Positives = 233/357 (65%), Gaps = 4/357 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186
           VNALS++ ++ +K+ G ++E  +  GI    +   G      GT  TF P   IF     
Sbjct: 1   VNALSTFCRVEVKKNGGVFEQEYKCGIPQYDVRKIGDTS-GHGTSTTFKPDPTIFQETTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F++D L  RLREL+FLN  + I+L+D+ + + +E    Y GG+ +FV YL+R K  +   
Sbjct: 60  FSFDYLSARLRELAFLNKGICINLVDEVNDKSQE--FKYDGGLISFVEYLNRSKVVIHNK 117

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI +   ++   I++A++WND Y E+V  + NNI   +GGTHL+GLR ALTR I      
Sbjct: 118 PIYMFFEKEETVIEIALQWNDSYSESVYSYANNINTAEGGTHLTGLRGALTRVINQLASN 177

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               +  K  +  DD REG T V+ +K+ DP+F  QTK KL +S +R++VES +N+ LS 
Sbjct: 178 DKAVQNLKEGLSPDDIREGLTGVVHVKLRDPQFEGQTKNKLANSRIRTLVESSLNEKLSD 237

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +  E+P  AK I+ K++DA+  R AAR+A++LTRRK  LD+  LPGK+ADC +RDP   E
Sbjct: 238 YFHENPDVAKKIISKIVDAARARIAARKAKELTRRKSALDLGGLPGKIADCQDRDPANCE 297

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           LF+VEGDSAGGSAKQGR R+ QA+LPL+GKILNVE+A  DKMLS+QEI  L+ ALGT
Sbjct: 298 LFIVEGDSAGGSAKQGRDRKTQAVLPLKGKILNVEKATTDKMLSNQEIRLLVQALGT 354


>gi|207107908|dbj|BAG71966.1| DNA gyrase subunit B [Gordonia namibiensis]
          Length = 411

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 173/414 (41%), Positives = 243/414 (58%), Gaps = 38/414 (9%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I+ +G  +E ++       PL   G A   TGT V F P  +IF+
Sbjct: 1   GISVVNALSTKVELEIENDGFHWEQTYTYAKP-GPLEK-GDATRKTGTTVRFWPDPEIFT 58

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216
               FN +T+  RL+E++FLN  + I+L D+R                            
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDDEASVTEVAEAVQTE 118

Query: 217 --------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   +P+  T  Y  G+  ++ +L+R K+ +  + I      +   +++AM+WN G
Sbjct: 119 TEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGHEVEIAMQWNAG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAKIIVKK  D++  
Sbjct: 239 VISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIVKKAADSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    Q
Sbjct: 299 RMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI +D FDI KLRYHKI++
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-RDEFDIAKLRYHKIVL 411


>gi|207107928|dbj|BAG71976.1| DNA gyrase subunit B [Gordonia westfalica]
          Length = 411

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 172/414 (41%), Positives = 242/414 (58%), Gaps = 38/414 (9%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I R+G+ +E ++        L   G A   TGT V F P  +IF+
Sbjct: 1   GISVVNALSTKVELEIARDGHNWEQTYTYAKP-GALEQ-GDATRKTGTTVRFWPDPEIFT 58

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216
               FN +T+  RL+E++FLN  + I+L D+R                            
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDANGDEDAPATDVAEVVQTE 118

Query: 217 --------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   +P+  T  Y  G+  ++ +L+R K+ +  + I      +   +++AM+WN G
Sbjct: 119 TEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGHEVEIAMQWNAG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAKII+KK  D++  
Sbjct: 239 VISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKKAADSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    Q
Sbjct: 299 RMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 411


>gi|195926972|dbj|BAG68373.1| gyrase B [Campylobacter helveticus]
          Length = 339

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 159/344 (46%), Positives = 225/344 (65%), Gaps = 5/344 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L   ++R+G IY   F  G++ +   V G     T T + F P   IF V +
Sbjct: 1   VVNALSKKLVATVERDGEIYRQEFSKGLIASEFGVVGKT-QKTSTTIEFWPDESIFEVTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+ L  R REL++LN  + I+  D R  +    +  ++GGI  FVS  D +KK  +  
Sbjct: 60  FDYEILAKRFRELAYLNPKITINFKDNRVGKS--ESFHFEGGISQFVS--DLNKKQALTK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI      DN+++++A+ +N+ Y EN+L F NNI   DGGTH +G R  LTR I++Y+E 
Sbjct: 116 PIFFSVDEDNVNVEVALLYNETYTENLLSFVNNIRTPDGGTHEAGFRMGLTRVISNYIEA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + G+D REG  +++S+K+P+P+F  QTK KL SS VR +V     + LS 
Sbjct: 176 NASAREKDNKITGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVRPIVNKASFEYLSK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           + EE+P+EAK I+ K L A+  R+AA++AR+LTR+K  L + +LPGKLADC  +DP +SE
Sbjct: 236 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 295

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           ++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE+AR DK+L 
Sbjct: 296 IYLVEGDSAGGSAKQGRERAFQAILPLRGKILNVEKARLDKILK 339


>gi|320202787|emb|CBZ01766.1| DNA gyrase subunit B [Aeromonas sp. P2G1]
 gi|320202789|emb|CBZ01767.1| DNA gyrase subunit B [Aeromonas sp. P1A11]
          Length = 332

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 190/335 (56%), Positives = 248/335 (74%), Gaps = 3/335 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ 
Sbjct: 1   SDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+        
Sbjct: 60  LAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFT 117

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
             +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SK
Sbjct: 118 TEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+
Sbjct: 178 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VE
Sbjct: 238 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           GDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 332


>gi|320202791|emb|CBZ01768.1| DNA gyrase subunit B [Aeromonas sp. P1D3]
          Length = 332

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 190/335 (56%), Positives = 248/335 (74%), Gaps = 3/335 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ 
Sbjct: 1   SDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+        
Sbjct: 60  LAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFT 117

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
             +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SK
Sbjct: 118 TEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+
Sbjct: 178 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VE
Sbjct: 238 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           GDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 332


>gi|207107920|dbj|BAG71972.1| DNA gyrase subunit B [Gordonia sihwensis]
          Length = 405

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 170/408 (41%), Positives = 245/408 (60%), Gaps = 33/408 (8%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           +SVVNALS+ ++L IKR G+++  ++ N     PL V G A + TGT V+F     IF  
Sbjct: 1   ISVVNALSTQVELEIKRNGSVWRQTYTNAEP-GPL-VEGEAASGTGTSVSFWADGKIFET 58

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------------------- 216
            ++N +T+  RL+E++FLN  + I+L D+R                              
Sbjct: 59  TEYNIETIARRLQEMAFLNKGLTITLTDERVHEAVLEAEVEESEDGDASIKTEEQKATAI 118

Query: 217 -EPREITMFYKGGIEAFVSYLDRHKK-PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
            + +  T  Y  G+  ++ +L+   K P+ ++ +      +   +++AM+WN+GY E+V 
Sbjct: 119 AKVKTRTYHYPDGLIDYIKHLNSRTKAPIHKTVVGFTAKGEGHEVEIAMQWNEGYAESVH 178

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S+K+
Sbjct: 179 TFANTINTAEGGTHEEGFRAALTSTVNRYAIDKKLIKEKDGKLSGDDIREGLAAVISVKV 238

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            DP+F  QTK KL ++EV+S V+   N+ L+ W + +P EAK I++K  D+   R AARR
Sbjct: 239 ADPQFEGQTKTKLGNTEVKSFVQKTCNEHLAMWFDANPAEAKTIIRKAADSQQARLAARR 298

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAILPLR
Sbjct: 299 ARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAILPLR 358

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           GKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 GKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKLRYHKIVL 405


>gi|148762407|dbj|BAF63905.1| DNA gyrase subunit B [Virgibacillus halodenitrificans]
          Length = 325

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 145/328 (44%), Positives = 212/328 (64%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ +++ +  +  I+ ++F  G+    + V G   + TGT V
Sbjct: 1   YKVFGGLHGVGASVVNALSTRMEVHVHLDNKIHFLAFEKGVPQGEIEVVGET-DVTGTTV 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P  +IF+    + +D L  RLREL+FLN  + I++ DKR+ E +  T+     +  +
Sbjct: 60  HFIPDPEIFTETTEYQFDILAQRLRELAFLNKGITITIEDKRTGEEQSATIMKAESVRMW 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
                +  K         +G  + I++++A+++NDG+  N+  F NNI   +GGTH SG 
Sbjct: 120 SISTVQ--KKYFMPRFYSEGEEEGIAVEVAIQYNDGFSSNLYSFANNIHTYEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ LTR I  Y  K+   K++  ++ G+D REG T+++S+K PDP+F  QTK KL +SEV
Sbjct: 178 RTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           RSV +S  ++  S +L E+P   KIIV+K L AS  R AA++AR+LTRRK  L+I++LPG
Sbjct: 238 RSVTDSIFSETFSKFLFENPTVGKIIVEKGLMASRARMAAKKARELTRRKSALEISNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|66474609|gb|AAY46874.1| GyrB [Aeromonas caviae]
          Length = 371

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 170/374 (45%), Positives = 233/374 (62%), Gaps = 3/374 (0%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVV ALS  L L I+R+G++YE ++  G    PL   G +   TGTEV F PS  
Sbjct: 1   HGVGVSVVLALSDKLLLTIRRDGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IFS   F+Y+ L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K
Sbjct: 60  IFSDSLFHYEILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR +
Sbjct: 118 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K +  GDD REG  +V+ + + DP FS Q K+K+VSS V++ +   +
Sbjct: 178 NNYMDKEDYSKKAKSAASGDDVREGMIAVIFLIVRDPEFSFQIKDKVVSSVVKTGMVQEM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            + L+    E+  +AK++V K++      D A RAR L+R    + I   P    D  E+
Sbjct: 238 YEKLADVGVENRGDAKLVVNKIIYGGHHGDNAGRARVLSRPISAVQIPGPPPARPDYDEK 297

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           D   SEL+  +G   GG A+QGR+R NQA  PL+GKI NVE+A    M SSQ  G + T 
Sbjct: 298 DRSLSELYESQGVFPGGFAQQGRNRMNQAKSPLKGKIRNVEKAGLVMMNSSQGGGPVNTP 357

Query: 481 LGTGIGQDSFDINK 494
            G G+G+D ++ +K
Sbjct: 358 PGCGMGRDEYNPDK 371


>gi|207107918|dbj|BAG71971.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 411

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 174/414 (42%), Positives = 242/414 (58%), Gaps = 38/414 (9%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I+ +G  +E ++       PL   G A   TGT V F P  DIF+
Sbjct: 1   GISVVNALSTKVELEIENDGFHWEQTYSYAKP-GPLEK-GDATRKTGTTVRFWPDPDIFT 58

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216
               FN +T+  RL+E++FLN  + I+L D+R                            
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDANGDEDAPATDVAEAVQTE 118

Query: 217 --------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   +P+  T  Y  G+  ++ +L+R K+ +  + I      +   +++AM+WN G
Sbjct: 119 TEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGHEVEIAMQWNAG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAKIIVKK  D++  
Sbjct: 239 VISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIVKKAADSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    Q
Sbjct: 299 RMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 411


>gi|159576579|dbj|BAF92837.1| DNA gyrase subunit B [Halomonas sp. KJ4-2-1]
          Length = 324

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 177/327 (54%), Positives = 233/327 (71%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGV VSVVNALS  L+L I R+G ++E  + +G+   PL V G     +GT V
Sbjct: 1   YKVCGGLHGVSVSVVNALSEELRLTIWRQGEVFEQIYHHGVPQAPLSVVGKTE-KSGTRV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS   F+  +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV
Sbjct: 60  HFRPSPATFANIEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+++K  L        G  D + +++AM+W+D + EN+ C+TNNIPQ+DGGTHL+G R
Sbjct: 118 DHLNKNKTVLNPVFHFNAGRDDGVEVEVAMQWSDAFTENIFCYTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AALTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    + +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRLFADYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP +SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSQSELYLVEGDSAGGSAK 324


>gi|295979465|dbj|BAJ07405.1| DNA gyrase subunit B [bacterium HMD444]
          Length = 278

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 128/278 (46%), Positives = 169/278 (60%), Gaps = 28/278 (10%)

Query: 62  DIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           D I VT++ D S +V DNGRGIP  +      E   SAAE++M  LHAGGKFNQ SYKVS
Sbjct: 1   DEIVVTIHADNSVSVVDNGRGIPVGIKWDDKHEPKRSAAEIVMCVLHAGGKFNQNSYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI------------LDNPLVVTGSA 165
           GGLHGVGVS VNALS WL+L ++R+G  Y M F  G+                +   G  
Sbjct: 61  GGLHGVGVSCVNALSKWLRLTVRRDGKKYFMEFHRGVPAVFDEEVIDGIPVRKMRELGPT 120

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GTEV +L   +IF   +++Y+ L  RLRELSFLN+ V+I LID+R+ +       +
Sbjct: 121 T-KRGTEVHWLADEEIFGTVEYHYEILAKRLRELSFLNNGVRIKLIDQRTGKE--EDFAF 177

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQ---------GSRDNISIDLAMRWNDGYHENVLCF 276
            GG+  +V YL+R+K+P+       Q         G    I++++AM+WND Y E VLC+
Sbjct: 178 SGGVRGYVEYLNRNKQPIHPHIFHAQGVVKVPQDVGHEVEIAVEVAMQWNDSYQEQVLCY 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           TNNIPQ DGGTHL+GLR+ALTR I  Y+E+   +KK K
Sbjct: 238 TNNIPQPDGGTHLTGLRAALTRVINRYIEEQEIAKKAK 275


>gi|207107892|dbj|BAG71958.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 411

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 171/414 (41%), Positives = 241/414 (58%), Gaps = 38/414 (9%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I R+G+ +  ++        L   G A   TGT V F P   IF+
Sbjct: 1   GISVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GDATRKTGTTVRFWPDPQIFT 58

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216
               FN +T+  RL+E++FLN  + I+L D+R                            
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDEDAPATDVAEVVLTE 118

Query: 217 --------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   +P+  T  Y  G+  ++ +L+R K+ +  + I      +   +++AM+WN G
Sbjct: 119 TEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGHEVEIAMQWNAG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAKII+KK  D++  
Sbjct: 239 VISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKKAADSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    Q
Sbjct: 299 RMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKLRYHKIVL 411


>gi|311992762|ref|YP_004009629.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Acj61]
 gi|295815051|gb|ADG35977.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Acj61]
          Length = 606

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 146/584 (25%), Positives = 236/584 (40%), Gaps = 71/584 (12%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------GLHHMIYEVLDNAIDESLE 58
           I+IL   + + KR  MYIG +  E                 GL  +I E++DN+IDE++ 
Sbjct: 6   IKILSDKEHIIKRSGMYIGSSANEEHERFVFGQFQKIKYVPGLVKIIDEIIDNSIDEAIR 65

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIPTDL---HKEEGISAAEVIMTRLHAGGKFNQK 112
               +A+ I VT++     +VSDNGRGIP  +    + E I       TR  AGG F   
Sbjct: 66  TNFQFANKIDVTVSP-HLVSVSDNGRGIPQAMITTPEGEQIPGPVAAWTRPKAGGNFGDD 124

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           S + +GG++GVG S+ N  S+          N   +   + +  + +     AG   GT 
Sbjct: 125 SERKTGGMNGVGSSLTNIFSTIFTGITCDGTNTITVKCKDNM--DSIDWKSKAGGRQGTS 182

Query: 173 VTFLPSSDIFS---VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           V+F P    F    + D     ++ RL+ LS +   +                       
Sbjct: 183 VSFEPDFSHFDCEIIGDQVIKIIEDRLQTLSVVYPDIAFKFNG----------------- 225

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
              +    ++ K   +  + +   +  I I    R +DG+ +  L + NNI  K+GG+H+
Sbjct: 226 TRVIGNFKKYAKQFDEHMLVMDTEKCAIGIG---RSDDGFRQ--LTYVNNIHTKNGGSHI 280

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
             +   L  ++   +++      +K        +E  T V+ ++ M + RF SQTKE+L 
Sbjct: 281 DYVMDELANEMIPLIKRKHKIDINKAR-----IKECITVVMFVRDMSNMRFDSQTKERLT 335

Query: 349 SS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVK---KVLDASMVRDAARRARDLTRRKG 403
           S   E++S +       L+            I++       A+      + ++  +R K 
Sbjct: 336 SPWGEIKSHI-DIDIKKLARMFVNSEEILMPIIEAVLARKLAAEKAAETKASKAASRAKV 394

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
              I +      D          LFL EGDSA G     R+RE     PLRGK +N    
Sbjct: 395 AKHIKANAYGKEDIET------TLFLTEGDSAIGYLLSTRNRELHGGYPLRGKFMNTWGM 448

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               +L ++E   +    G   G+ +     L Y  I IMTDADVDG       L  FF 
Sbjct: 449 LPSDILKNKESFDICAITGLVFGEKA---EGLNYRNIAIMTDADVDGTGSIYPSLLAFFA 505

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
             P L   G +  +K P++   +GK  ++    +  E       
Sbjct: 506 NWPELFEQGRIKFVKTPVWICQKGKEQKWFYTSDEYEAVKDELK 549


>gi|238768406|dbj|BAH66766.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 195/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 119 DGIGLEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTEVEQAMGEKLADFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 299 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|311358936|gb|ADP94157.1| GyrB [Geobacillus stearothermophilus]
          Length = 339

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 161/338 (47%), Positives = 224/338 (66%), Gaps = 3/338 (0%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF    YKVSGGLHGVG SVVNALS WL++ + R+G I+   +  G     L
Sbjct: 4   MTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDL 63

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
            V G   + TGT   F P  +IF+    F+Y+TL  RLREL+FLN  ++I+L D+R    
Sbjct: 64  QVIGET-DRTGTTTRFKPDPEIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNR 122

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
           +     Y+GGI ++V +L+R ++ L + PI I G RD I++++A+++NDGY  N+  F N
Sbjct: 123 KNE-YVYEGGIRSYVRHLNRTREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVN 181

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NI   +GGTH SG + ALTR I  Y  K    K++  ++ GDD REG T+++SIK P P+
Sbjct: 182 NIHTHEGGTHESGFKMALTRIINDYARKQQIFKENDANLTGDDVREGLTAIVSIKHPSPQ 241

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL +S+ R+V ++  ++    +L E+P  A+ IV+K + A+  R AA++AR+L
Sbjct: 242 FEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKAREL 301

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           TRRK  L+I+ LPGKLADCS RDP  SEL++VEGDSAG
Sbjct: 302 TRRKSALEISXLPGKLADCSSRDPSISELYVVEGDSAG 339


>gi|159576558|dbj|BAF92827.1| DNA gyrase subunit B [Halomonas alimentaria]
          Length = 324

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 177/327 (54%), Positives = 230/327 (70%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALS  L+L + R G++YE  + +G+   PL V G     +GT V
Sbjct: 1   YKVFGGLHGVGVSVVNALSEELRLTVWRAGDVYEQLYRHGVPQAPLSVVGKTE-KSGTRV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS + F   ++++D L  RLRELSFLNS V I LID+RS +       Y+GG++AFV
Sbjct: 60  HFRPSPETFGNIEYHFDILAKRLRELSFLNSGVAIRLIDERSGKE--EVFHYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K  L           D + +++AM+W+D ++EN+ C+TNNIPQ+DGG HL+G R
Sbjct: 118 DHLNTNKTVLNPVFHFNAEREDGVGVEVAMQWSDSFNENIFCYTNNIPQRDGGAHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y+E     KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AALTRTLNGYIESEGLLKKSKISTAGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +      +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMARLFGEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP  SELFLVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSLSELFLVEGDSAGGSAK 324


>gi|255065020|ref|ZP_05316875.1| DNA topoisomerase IV, B subunit [Neisseria sicca ATCC 29256]
 gi|255050441|gb|EET45905.1| DNA topoisomerase IV, B subunit [Neisseria sicca ATCC 29256]
          Length = 542

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 152/549 (27%), Positives = 252/549 (45%), Gaps = 27/549 (4%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182
           GVSV NALS+ L++ +KREG I+ + F  G +  PL   G     D+GTEV   P    F
Sbjct: 2   GVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRVWPDGKYF 61

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFVSYLDRHK 240
              +++   L+  LR  + L   V++SL    K   E    T  Y  G++++++ L    
Sbjct: 62  ESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEAHTQTWHYPDGLKSYLTDLIADA 121

Query: 241 K---PLMQSPIRIQGSRDNI-----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           +   PL      I    +           A+ W +        + N IP   GGTH +GL
Sbjct: 122 QEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLGGTHEAGL 181

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           + A+   + +++       +    V  DD       VLS ++ DP+F  QTK+KL + + 
Sbjct: 182 KQAVFNAVNNFINLHNLLPRG-VKVQSDDVFSKTAFVLSARVLDPQFQGQTKDKLTNRDA 240

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
             +V +   D L  WL ++    K I +  +  +  R  + +      +K    +A LPG
Sbjct: 241 LKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSVKK---IEKKKGSGVAVLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DC   D +++ELFLVEGDSAGGSAK  R +  QAILPLRGK+LN      D++  + 
Sbjct: 298 KLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQLFGNA 357

Query: 473 EIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           EI  +  A+G      + + +   LRY KI I++DADVDG+HI+ LLLT F+R  P L+ 
Sbjct: 358 EIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPKLVA 417

Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           +G +Y+ +PPL+ +      +    + + + Y ++Q+  + I         + K  ++  
Sbjct: 418 DGHIYVAQPPLFRVDVNAQGK---SKPARKFYALDQNELDSIL------ERLQKEGVKET 468

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
                +    + +  P+  K          +   +  +  +          +      + 
Sbjct: 469 AYSISRFKG-LGEMNPDQLKDTTMHPDTRRLLQVQIPEGADDETRDIFVKLMGKGEAAAR 527

Query: 651 KSWHGSINN 659
           ++W     +
Sbjct: 528 RAWMEREGD 536



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 451 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 509

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 510 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 542


>gi|51571557|emb|CAH18945.1| gyrase B [Corallococcus coralloides]
          Length = 349

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 173/344 (50%), Positives = 239/344 (69%), Gaps = 3/344 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           N LS W K+R++R G +YE S+  G+ + P    G   +  GT + F P   +    DFN
Sbjct: 1   NFLSEWFKVRVQRAGKVYEQSYARGVSNGPPQEAG-TTDKRGTTIHFKPDPTVMETVDFN 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLREL+FLN+ + I++ D+R+ +  +    + GGI +FV YL++ K+ L   P+
Sbjct: 60  FETLSQRLRELAFLNAGLHITIRDERTQKEHD--FKFDGGISSFVEYLNKAKEALHDKPV 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I+  R+ +S+++AM+WNDGY E +  F NNI   +GG+HLSG ++ALTR + SY EK  
Sbjct: 118 YIKSEREGVSLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAALTRTLNSYAEKGG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K  K +  G+D REG ++V+S+K+ +P+F  QTK KL +SEV+ +VE  VND L+++L
Sbjct: 178 LWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGLVEQMVNDQLASFL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AK +V K+ DA   R AAR+AR+  RRKGVLD   LPGKLADC  RDP +SEL+
Sbjct: 238 EENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLDGGGLPGKLADCQSRDPHESELY 297

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           +VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S 
Sbjct: 298 IVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSA 341


>gi|159576572|dbj|BAF92834.1| DNA gyrase subunit B [Halomonas sulfidaeris]
          Length = 324

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 173/327 (52%), Positives = 232/327 (70%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS+ L+L I R+G ++E  + +G+   PL V G     +GT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSAELRLTIWRQGEVFEQMYRHGVPQAPLGVVGKTE-KSGTRV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS + F   +F++D L  RLRELSFLNS V I L+D+RS +       Y+GG+ AFV
Sbjct: 60  HFRPSPETFGNIEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K  +           D + +++AM+W++ + EN+ C+ NNIPQ+DGG HL+G R
Sbjct: 118 DHLNTNKSVINPVFHFNAVRDDGVEVEVAMQWSEAFTENIFCYPNNIPQRDGGAHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           + LTR + +Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AGLTRTLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  ++   S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMSRLFSDYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP +SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSQSELYLVEGDSAGGSAK 324


>gi|210062240|gb|ACJ06169.1| GyrB [Aeromonas allosaccharophila]
          Length = 341

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 188/332 (56%), Positives = 245/332 (73%), Gaps = 3/332 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYE 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+       
Sbjct: 60  ILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
              +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   S
Sbjct: 118 TTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYS 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E
Sbjct: 178 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 297

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           EGDSAGGSAKQGR+R+NQAILPL+GKILNVER
Sbjct: 298 EGDSAGGSAKQGRNRKNQAILPLKGKILNVER 329


>gi|155122232|gb|ABT14100.1| hypothetical protein MT325_M546R [Paramecium bursaria chlorella
           virus MT325]
          Length = 1058

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 148/698 (21%), Positives = 265/698 (37%), Gaps = 75/698 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE--------------------SGLHHMIYEVLDN 51
           A     L   + V  RP  Y+G  + E                         +  E+L N
Sbjct: 2   ASKYIKLSQREHVLARPDTYVGSVEKELRNDFVYDGAKITKKDVLYSPAFLKIFDEILVN 61

Query: 52  AIDESLEGYA-DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           + D    G A   + V ++ D S +V ++G  IP + + +EG+   E+I   L +G  F+
Sbjct: 62  SADCFNRGGAMSTLKVAISKD-SISVYNDGCSIPLEKN-DEGVYIPEMIFGHLLSGENFD 119

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI-LDNPLVVTGSAGNDT 169
               +   G +G G  + N  S    + I    + Y  S+ + +   +   +T S+   +
Sbjct: 120 DTEERTGAGRNGYGSKLTNIFSKTFVVEIYDGSHKYVQSWSDNMISVSKAKITKSSKVPS 179

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T   F+P    F + D + DT   L  R+ +++ +  SV++ L                
Sbjct: 180 ITTS-FVPDLARFGMADIDDDTRSILVRRVYDMAAVLGSVRVFL---------------- 222

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G    V     + K      +  + +       + +   + +    + F N    + GG
Sbjct: 223 DGKRLDVKTPLDYFKLYTNEKVVFESAD---GWSIGVAPANEFA--CVSFVNASAAR-GG 276

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH+  + +++ + +     K       K  V     +      ++ K+ +P FSSQTK+ 
Sbjct: 277 THVDTVVNSIAKAVVEAASK------KKTIVKPAMVKNKLFVFVNAKVVNPTFSSQTKDI 330

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L S  ++    +      +  + +  +    + + ++DA +++      +        L 
Sbjct: 331 LTSRNIKFSPSAAFLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLT 390

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERA 463
            A+  G       ++     L L EGDSA   A  G +   RE   I PLRGK+LNV  A
Sbjct: 391 DAAWAG------TKNSGLCTLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDA 444

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               + ++ EI  +   LG  +G+   D + LRY  +++MTDADVDG+HI  L++ FF  
Sbjct: 445 SVSSIAANAEIAAIKQILGLQVGKTYKDASSLRYGSVMLMTDADVDGSHISALVMNFFHA 504

Query: 524 QMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGV 581
           Q PSL+   GFL     P+   +RGK ++        E +  N    ++    +    G 
Sbjct: 505 QFPSLLAVPGFLKKFSTPIVVASRGKDIKEFYSLPDYESWKQNTADCAKWSIKYFKGLGT 564

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
            +  D + +  +       +K        T     +I   FN     E   +        
Sbjct: 565 STSEDAKKYFKN-------LKSLVKIFGWTEDSGELIDRSFNKSRPDER-KTWLLDFQPG 616

Query: 642 LNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                 K+       I+   IL  R         V++G
Sbjct: 617 NQLDQSKTNIPVPDFIDKELILFSRYDVERSIPSVVDG 654


>gi|62633142|gb|AAX89530.1| DNA gyrase subunit B [Vibrio tapetis]
          Length = 316

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 177/318 (55%), Positives = 235/318 (73%), Gaps = 3/318 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKFN  SYKVSGGLHGVGVSVVNALS  + L I R+G+ ++ ++ +G  D PL  TG  
Sbjct: 1   GGKFNDNSYKVSGGLHGVGVSVVNALSKQVDLTIHRQGSTHQHTYRHGEPDAPLGATGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT + F PS + F+   F+Y+ L  RLRELSFLNS V I LID+R  E +     Y
Sbjct: 61  E-KTGTIIRFWPSEETFTNVHFHYEILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFCY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GG +AFV YL+ +K P++Q        R++ IS+++AM+WNDGY EN+ CFTNNIPQ+D
Sbjct: 119 EGGTQAFVDYLNTNKTPIIQKVFHFDYEREDGISVEVAMQWNDGYQENIFCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK
Sbjct: 179 GGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VES + + LS +L E+P EAKI+ +K++DA+  RDAAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVESAMGEKLSEFLIENPSEAKIVCRKIIDAARARDAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDP 422
           LD+A LPGKLADC  +DP
Sbjct: 299 LDLAGLPGKLADCQXKDP 316


>gi|323146964|gb|ADX32775.1| DNA gyrase B subunit [endophytic bacterium 11(2011)]
          Length = 228

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/229 (43%), Positives = 143/229 (62%), Gaps = 19/229 (8%)

Query: 48  VLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVIMTRL 103
           VLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE++MT L
Sbjct: 1   VLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIVMTEL 60

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------- 155
           HAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+         
Sbjct: 61  HAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVIEEI 120

Query: 156 ----DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
                +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L 
Sbjct: 121 GGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLT 179

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           D+RS +       + GG++ FV Y+++ K  L  +   + G +D + ++
Sbjct: 180 DQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVE 226


>gi|159576560|dbj|BAF92828.1| DNA gyrase subunit B [Halomonas arcis]
          Length = 324

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 175/327 (53%), Positives = 234/327 (71%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALS  L+L I R+G ++E  + +G+   PL + G     +GT V
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELRLTIWRQGEVFEQVYQHGVPQAPLGIVGKTE-KSGTRV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS + F+  +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV
Sbjct: 60  HFRPSPNTFANIEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+++K  L           D + +++AM+W++ + EN+ C+TNNIPQ+DGGTHL+G R
Sbjct: 118 DHLNKNKTVLNPVFHFNALREDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR +  Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AALTRTLNHYIEAQGLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    + +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRLFADYLIEKPNEAKSIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP +SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSQSELYLVEGDSAGGSAK 324


>gi|92919037|gb|ABE96865.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 339

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 201/342 (58%), Positives = 259/342 (75%), Gaps = 3/342 (0%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           E ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V
Sbjct: 1   EQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
            I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WN
Sbjct: 60  SIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWN 117

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           D Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG 
Sbjct: 118 DAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGL 177

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+
Sbjct: 178 IAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAA 237

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+
Sbjct: 238 RAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRK 297

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D
Sbjct: 298 NQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 339


>gi|261488458|emb|CAU94904.1| DNA gyrase subunit B [Pelomonas puraquae]
          Length = 344

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 177/347 (51%), Positives = 238/347 (68%), Gaps = 22/347 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VN LS +L+L +++ G +
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKFLRLTVRQNGKV 59

Query: 146 YEMSFINGILDN------------PLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTL 192
           + + F  GI  N            P+ V G   +  GTEV FLP ++IF   + ++YD L
Sbjct: 60  HFLEFAKGIPQNGESVMVDGVETRPMKVIGET-DKRGTEVHFLPDTEIFKENNDYHYDIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I L+D+RS +       Y GG++ FV ++++ K  L  +     G
Sbjct: 119 AKRLRELSFLNNGVKIRLVDERSNKE--DNFAYAGGVKGFVEFINKGKTTLHPNIFHAVG 176

Query: 253 SR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +       I +++AM+WNDG++ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 EKVSEQGTTIGVEVAMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR+ VE  V+  L+ +
Sbjct: 237 ELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDY 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           L E+PL+AK I  K+LDA+  R+AAR+AR++TRRKGVLD   LPGKL
Sbjct: 297 LLENPLDAKTICGKILDAARAREAARKAREMTRRKGVLDGLGLPGKL 343


>gi|207107886|dbj|BAG71955.1| DNA gyrase subunit B [Gordonia aichiensis]
          Length = 407

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 175/410 (42%), Positives = 240/410 (58%), Gaps = 34/410 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I   G  +E ++       PL V G+A   TGT V F    +IF 
Sbjct: 1   GISVVNALSTKVELEINYGGYHWEQTYDYAKP-GPL-VQGAATRKTGTTVRFWADPEIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI---------------------- 221
              ++ +T+  RL+E++FLN  + I+L D+R                             
Sbjct: 59  TTTYSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDDDTAEKPKNAEEEAST 118

Query: 222 ---------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
                    T  Y  G+  ++ +L+R K P+ QS I          +++AM+WN GY E+
Sbjct: 119 PAVTQPRTRTYHYPDGLVDYIKHLNRTKTPIHQSVIGFTAKGTGHEVEIAMQWNSGYSES 178

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S+
Sbjct: 179 VHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLSGDDIREGLAAVISV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++EV+S V+   N+ LS W E +P EAKIIVKK +D++  R AA
Sbjct: 239 KVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLSHWFEANPAEAKIIVKKAVDSAQARLAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           RRAR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAILP
Sbjct: 299 RRARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++
Sbjct: 359 IRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHKIVL 407


>gi|330979123|gb|EGH78032.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 158

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/160 (51%), Positives = 118/160 (73%), Gaps = 5/160 (3%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+    + SY+AD+I++L GLD V+KRP MY   TD     +H+  EV+DN++DE+L G+
Sbjct: 1   MATPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRP-NHLAQEVIDNSVDEALAGH 55

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           A  + V L+ D S  VSD+GRG+P D+H EEG+S  E+I+T+LHAGGKF+ K+Y+ SGGL
Sbjct: 56  ARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           HGVG+SVVNALS+ +++R+KR+GN YEM+F +G     L 
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELA 155


>gi|326804512|ref|YP_004327383.1| DNA topoisomerase 2 [Salmonella phage Vi01]
 gi|301795162|emb|CBW37880.1| DNA topoisomerase 2 [Salmonella phage Vi01]
          Length = 636

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 130/636 (20%), Positives = 227/636 (35%), Gaps = 69/636 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGESG-----------------------LHHMIYEV 48
               + L  ++ +  RP  ++G      G                       L     E+
Sbjct: 8   ERKYKKLTHIEHILLRPERHLGSIRSAVGTTWIYDPIKDQVIFKDNFEYSPALIKQFDEI 67

Query: 49  LDNAIDESLEGYAD---IITVTLNM-DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104
           + N++D S          IT+T++  +G   V+DNG GIP   H E      E++   L+
Sbjct: 68  ITNSVDHSKTPEGKSLTEITITVSPMNGQIIVADNG-GIPVVKHGETKEWLPEMLFGSLY 126

Query: 105 AGGKF--NQKSY--KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           AG  F  + + Y  K SGG +G G S+VN  S W ++        Y  +F + +      
Sbjct: 127 AGSNFNDDDEEYNNKKSGGQNGEGASLVNVFSKWFRVTTNDGKKSYTQTFEDNLSKRSNP 186

Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSVQISLIDKRSPE 217
           V  S  N  GT + ++P      V+  + +    +  R  E++  N  +++ L  K+   
Sbjct: 187 VI-SNLNAPGTSIAWIPDYARLGVKGLDQNNLLMIYRRAFEVAACNPRLKVILNGKQIRI 245

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL-CF 276
            R                               QGS  + + + ++         +   +
Sbjct: 246 DRFGHFV----------------------DYFCQGSSVDETEEWSVAVAPSQGTFIHASY 283

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N+I    GG H+  +   +   I   + K       K  +     +      +S  + +
Sbjct: 284 VNSIATHIGGPHVDYVADQIVNAIRPQLVKK-----FKTDLKPSMIKNHMMLFISADINN 338

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           PRF SQTKE++ +   +       +D L     E            L          +A+
Sbjct: 339 PRFDSQTKERMTTPVSQFGTTYKPSDKLIRKALEFVTAGLSKELAALRNDQDDAEFEKAK 398

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
               ++   +I       A     D     L L EGDSA       R  +   + PLRGK
Sbjct: 399 KDISKRDYREIEKYYPATAR---GDRSGCSLLLTEGDSASNPILNARDTKKIGLFPLRGK 455

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
            +N       K+++++E   L T  G  +     DI   RY + ++ TDAD DG HIR L
Sbjct: 456 FINCLNNPRSKVMNNEEFKNLCTIHGGAVPGQPIDI--TRYPQTVVATDADDDGIHIRGL 513

Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576
           L+T +    P  +  G L +++ P   I  GK++         E++L      +  +   
Sbjct: 514 LITLYCTYWPEYVRQGRLKLLRTPYMRIWCGKTMYEFMSNTEYEEFLKTPDAKKITKKKY 573

Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
                 +  +    I + L           N+ ++ 
Sbjct: 574 LKGLGGNSTEDFKRILNNLDAYTTTVTLDDNYKESL 609


>gi|308197533|gb|ADO17804.1| GyrB [Vibrio ichthyoenteri ATCC 700023]
          Length = 293

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 145/283 (51%), Positives = 202/283 (71%), Gaps = 4/283 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+++  ++ +G    PL V  
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIWRGGHVHTQTYCHGEPQAPLAVIA 60

Query: 164 SAGNDTGTEVTFLP-SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                TGT++ F P      +V +F+YD L  RLRELSFLNS V I LID+R  E +   
Sbjct: 61  DTE-KTGTKIRFWPSDQTFTNVLEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDH 118

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIP 281
             ++GGI+AFV +L+ +K P++         R++ I++++AM+WNDG+ EN+ CFTNNIP
Sbjct: 119 FEFEGGIQAFVEHLNTNKTPIIDKIFHFDFEREDGITVEVAMQWNDGFQENIYCFTNNIP 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSS
Sbjct: 179 QRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSS 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           QTK+KLVSSEV+S VES + + L+ +L E+P EAK++  K++D
Sbjct: 239 QTKDKLVSSEVKSAVESAMGEKLAEFLIENPTEAKMVCSKIID 281


>gi|210062264|gb|ACJ06181.1| GyrB [Aeromonas sp. ER.1.21]
          Length = 326

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 187/329 (56%), Positives = 242/329 (73%), Gaps = 3/329 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+
Sbjct: 1   LSEKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYE 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+       
Sbjct: 60  ILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
              +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   S
Sbjct: 118 TTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYS 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E
Sbjct: 178 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 297

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILN 459
           EGDSAGGSAKQGR+R+NQAILPL+GKILN
Sbjct: 298 EGDSAGGSAKQGRNRKNQAILPLKGKILN 326


>gi|220680576|dbj|BAH10777.1| DNA gyrase subunit B [Nocardia transvalensis]
          Length = 399

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 160/402 (39%), Positives = 237/402 (58%), Gaps = 31/402 (7%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+  I   G  +   + +      L V G     TGT + F    +IF    +N
Sbjct: 1   NALSTRLQADIDYGGYHWTQEYKDAKP-GKL-VQGDPTKRTGTTIRFWADPNIFETTYYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----------------------------SPEPRE 220
           ++T+  RL+E++FLN  + I+L D+R                              + + 
Sbjct: 59  FETVSRRLQEMAFLNKGLTITLTDQRVSDSEITEEVVSETAEAPKHEGEAATVTEQKVKT 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+E FV +++R K+ +  + +          +++AM+WN GY E+V  F N I
Sbjct: 119 RTYHYPGGLEDFVKHINRTKQAIHNTVVGFTSKGTGHELEVAMQWNSGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ +P+F 
Sbjct: 179 NTHEGGTHEEGFRAALTSVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P +AK IV+K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQRTCNENLAHWFEANPADAKTIVQKAVSSAQARVAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC  +DP+ SE+++VEGDSAGGSAK GR    QAILP+RGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           E++R DK+L + E+ ++ITA GTGI  D FDI+KLRYHKII+
Sbjct: 359 EKSRIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIIL 399


>gi|210062256|gb|ACJ06177.1| GyrB [Aeromonas media]
          Length = 332

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 188/335 (56%), Positives = 247/335 (73%), Gaps = 3/335 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYE 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+       
Sbjct: 60  ILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
              +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   S
Sbjct: 118 TTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYS 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E
Sbjct: 178 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 297

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           EGDSAGGSAKQGR+ ++QAILPL+GKILNVE+ARF
Sbjct: 298 EGDSAGGSAKQGRNPQDQAILPLKGKILNVEKARF 332


>gi|40804952|gb|AAR91744.1| topoisomerase II [Trichomonas vaginalis]
          Length = 1458

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 141/722 (19%), Positives = 267/722 (36%), Gaps = 71/722 (9%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT---------------------DGESG 40
           SD+ +  S   +    L   + V  RP  YIG                           G
Sbjct: 4   SDSQEKLSESDEQYVKLTHREHVLTRPDSYIGSIEPRECKMWVCNEDGKFEFREISYVPG 63

Query: 41  LHHMIYEVLDNAIDESLEGYA-DIITVTLNM-DGSCTVSDNGRGIPTDLHKEEG----IS 94
           L+ +  E+L NA D          I   ++      +V ++G+GI T             
Sbjct: 64  LYKIFDEILVNAADNKQRDPPLTTIKGEVDPAQNRISVWNDGKGISTQKQFSPNDNCEYY 123

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFIN 152
             E I ++L     +N K  KV+GG +G G  + N  S    + I    EG  Y+ +  +
Sbjct: 124 IPEFIFSQLLTSSNYNDKQEKVTGGRNGYGAKLANIFSKKFHINIYNADEGINYQQTITD 183

Query: 153 GIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFS---VQDFNYDTLQHRLRELSFLNSSVQI 208
            +    P  +    G  + TE++F P  + F+   +   + D ++ R+ +L+ +   V+I
Sbjct: 184 NMTNIQPPKLKNGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRRVYDLADILPKVKI 243

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                + P  +                   + K  ++  +    +    +  + +  +  
Sbjct: 244 FWNGNQVPIKKWEDY------------CKVYLKEDVKPLVCEVKNEKGYTWKIGVAPSKS 291

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
                + F N +   +GGTH+  + + +T+ IT Y++     +  K        +     
Sbjct: 292 REFQQISFVNCVATSNGGTHVDVVVNQITKYITDYLKNR---RSGKVETKPSVVKNFLYV 348

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            +   + +P F SQTKE+L   + +   +  + D     + +       IV  V + +  
Sbjct: 349 FVDSLVINPSFDSQTKERLTLDQKKLKDDCKLPDNFLDKILKTD-----IVALVTEYANF 403

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---R 445
           ++  + A     +KG L I +         + +  K  L L EGDSA  +A  G +   R
Sbjct: 404 KEQRKVANMKGTKKGRLII-NKLEDANMAGKAESLKCTLILTEGDSAKATAVTGLATIGR 462

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS---FDINKLRYHKIII 502
           +   + PLRGK+LN       K+  + EI  +I  +G    +       + +LRY  I+I
Sbjct: 463 DYYGVFPLRGKLLNTRDISAKKLSENDEIQNIIKIMGLDPMEKYENDDSMKRLRYGSIMI 522

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           M D DVDG+HI+ L++ F     P+L+    F+     P+  +T+G       +++    
Sbjct: 523 MADQDVDGSHIKGLIINFVHSMWPNLLKKRNFITEFITPIVKVTKGN------NKKGAIS 576

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI----EQAV 617
           +      S+      + KG   K         A +  +   +   +          ++  
Sbjct: 577 FFTIPEFSQWKAANNNGKGYKMKYYKGLATSTAEEAKEYFSNISKHKKVFIYTNENDEER 636

Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677
           I+  F  +   +    LA   AN      + +   +   ++   IL    A        +
Sbjct: 637 INLAFAKKRADDRKNWLAQLDANETYLGTKDTHIKYSDFVDKELILFSSYANYRAIPSSI 696

Query: 678 EG 679
           +G
Sbjct: 697 DG 698


>gi|308197535|gb|ADO17805.1| GyrB [Vibrio scophthalmi LMG 19158]
          Length = 294

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 145/283 (51%), Positives = 203/283 (71%), Gaps = 4/283 (1%)

Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163
           HAGGKF+  SYKVSGGLHGVGVSVVNALS  ++L I R G+++  ++ +G    PL V  
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIWRGGHVHTQTYCHGEPQAPLAVIA 60

Query: 164 SAGNDTGTEVTFLP-SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222
                TGT++ F P      +V +F+YD L  RLRELSFLNS V I LID+R  E +   
Sbjct: 61  DTE-KTGTKIRFWPSDQTFTNVLEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDH 118

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIP 281
             ++GGI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIP
Sbjct: 119 FEFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGITVEVAMQWNDGFQENIYCFTNNIP 178

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSS
Sbjct: 179 QRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSS 238

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           QTK+KLVSSEV+S VES + + L+ +L E+P EAK++  K++D
Sbjct: 239 QTKDKLVSSEVKSAVESAMGEKLAEFLIENPTEAKMVCSKIID 281


>gi|118197159|dbj|BAF37049.1| gyrase subunit B [Xanthomonas albilineans]
          Length = 353

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 199/355 (56%), Positives = 254/355 (71%), Gaps = 3/355 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFN 188
           ALS  L L I + G  Y+  + +G    PL          GT + F PS   F+   +F+
Sbjct: 1   ALSEKLLLDIFQGGFHYQQEYSHGAALAPLKQL-ETSTKRGTTLRFWPSVKAFNNNVEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V+I L D+R  E R     Y+GGI +FV +L   K PL  + I
Sbjct: 60  YDILARRLRELSFLNSGVKIVLADER-GEGRRDDFHYEGGIRSFVEHLAHLKTPLHPNVI 118

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR + +Y+E++ 
Sbjct: 119 SVSGEHNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVLNNYIEQNG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE+     L  +L
Sbjct: 179 IAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAFGARLEEFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           +E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLADC E+DP  SELF
Sbjct: 239 QENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLADCQEKDPALSELF 298

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           +VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++GTLITALGT
Sbjct: 299 IVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVGTLITALGT 353


>gi|207107926|dbj|BAG71975.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 411

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 176/414 (42%), Positives = 244/414 (58%), Gaps = 38/414 (9%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I+ +G  +E ++        L   GSA   TGT V F P  +IF+
Sbjct: 1   GISVVNALSTKVELEIQNDGYNWEQTYSYAKP-GALEQ-GSATRKTGTTVRFWPDPEIFT 58

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------------------- 215
               FN +T+  RL+E++FLN  + I+L D+R                            
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDADGDEDGGSTEAAEVVKSE 118

Query: 216 -------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   +P+  T  Y  G+  ++ +L+R K+ +  + I      D   +++AM+WN G
Sbjct: 119 EEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFNAKGDGHEVEIAMQWNAG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S+K+ DP+F  QTK KL ++EV+  V+   N+ L  W E +P EAKIIVKK +D+S  
Sbjct: 239 VISVKVSDPQFEGQTKTKLGNTEVKGFVQRTCNEHLGHWFEANPAEAKIIVKKAVDSSQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    Q
Sbjct: 299 RMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI+KLRYHKI++
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKLRYHKIVL 411


>gi|207107888|dbj|BAG71956.1| DNA gyrase subunit B [Gordonia alkanivorans]
          Length = 411

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 172/414 (41%), Positives = 241/414 (58%), Gaps = 38/414 (9%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I R+G+ +  ++        L   G A   TGT V F P  DIF+
Sbjct: 1   GISVVNALSTKVELEIARDGHNWTQAYSYAKP-GALEQ-GDATRKTGTTVRFWPDPDIFT 58

Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216
               FN +T+  RL+E++FLN  + I+L D+R                            
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDEDAPTTDVAEVVLSE 118

Query: 217 --------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                   +P+  T  Y  G+  ++ +L+R K+ +  + I      +   +++AM+WN G
Sbjct: 119 TEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGHEVEIAMQWNAG 178

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + GDD REG  +
Sbjct: 179 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREGLAA 238

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAKII+KK  D++  
Sbjct: 239 VISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKKAADSAQA 298

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    Q
Sbjct: 299 RMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQ 358

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 AILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 411


>gi|118197157|dbj|BAF37048.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197161|dbj|BAF37050.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197163|dbj|BAF37051.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197165|dbj|BAF37052.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197167|dbj|BAF37053.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197169|dbj|BAF37054.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197175|dbj|BAF37057.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197177|dbj|BAF37058.1| gyrase subunit B [Xanthomonas albilineans]
          Length = 353

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 199/355 (56%), Positives = 253/355 (71%), Gaps = 3/355 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFN 188
           ALS  L L I + G  Y+  + +G    PL          GT + F PS   F+   +F+
Sbjct: 1   ALSEKLLLDIFQGGFHYQQEYSHGAALAPLKQL-ETSAKRGTTLRFWPSVKAFNNNVEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V+I L D+R  E R     Y+GGI +FV +L   K PL  + I
Sbjct: 60  YDILARRLRELSFLNSGVKIVLADER-GEGRRDDFHYEGGIRSFVEHLAHLKTPLHPNVI 118

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR + +Y+E++ 
Sbjct: 119 SVSGEHNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVLNNYIEQNG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE+     L  +L
Sbjct: 179 IAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAFGARLEEFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           +E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLADC E+DP  SELF
Sbjct: 239 QENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLADCQEKDPALSELF 298

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           +VEGDSAGGSAKQGR+R NQA+LPLRGKILNVERARFD+ML+S ++GTLITALGT
Sbjct: 299 IVEGDSAGGSAKQGRNRRNQAVLPLRGKILNVERARFDRMLASDQVGTLITALGT 353


>gi|118197171|dbj|BAF37055.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197173|dbj|BAF37056.1| gyrase subunit B [Xanthomonas albilineans]
          Length = 353

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 200/355 (56%), Positives = 254/355 (71%), Gaps = 3/355 (0%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFN 188
           ALS  L L I + G  Y+  + +G    PL          GT V F PS   F+   +F+
Sbjct: 1   ALSEKLLLDIFQGGFHYQQEYSHGAALAPLKQL-ETSAKRGTTVRFWPSVKAFNNNVEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V+I L D+R  E R     Y+GGI +FV +L   K PL  + I
Sbjct: 60  YDILARRLRELSFLNSGVKIVLADER-GEGRRDDFHYEGGIRSFVEHLAHLKTPLHPNVI 118

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR + +Y+E++ 
Sbjct: 119 SVSGEHNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVLNNYIEQNG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE+     L  +L
Sbjct: 179 IAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAFGARLEEFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           +E+P EAK I  K++DA+  R+AAR+ARDLTRRKG LDIA LPGKLADC E+DP  SELF
Sbjct: 239 QENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLADCQEKDPALSELF 298

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           +VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++GTLITALGT
Sbjct: 299 IVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVGTLITALGT 353


>gi|188090462|gb|ACD49465.1| gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 287

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 101/287 (35%), Positives = 143/287 (49%), Gaps = 6/287 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY I +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIGLPPLYKIKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L+ YL + ++     +    +  I    L   +         I+     +D+  +E
Sbjct: 61  DDPALDSYLASSAVENAALVPATGEPGIEGLALEKLLLAYAAALDSIERNAHRYDRNLLE 120

Query: 615 QAVISGVFNCESDQEINVSL-ASKLANRLNFIAEKS-----EKSWHGSINNSDILVKRIA 668
             V     + ES +          LA RLN  +  S     E         + +LV R  
Sbjct: 121 ALVDFVPMDLESLRAAGEGEGLDALAKRLNQGSLGSPRFTLELQEANDERPAAVLVTRRH 180

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            G Q   VL  S+  S   +     S  +        ++      I++       + +  
Sbjct: 181 MGEQHIQVLPMSAFESGELRAIHQASKLLHGLVREGATISRGAKSIEVDSFAKAQNWLLE 240

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
             ++G  +QR+KGLGEMN  QLW+TT+NP+TR LL+V+I DA  AD 
Sbjct: 241 EAKRGRQIQRFKGLGEMNPEQLWDTTVNPETRRLLQVRIEDAVAADQ 287


>gi|221504652|gb|EEE30325.1| DNA gyrase subunit B, putative [Toxoplasma gondii VEG]
          Length = 1234

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 112/169 (66%), Gaps = 8/169 (4%)

Query: 10  YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69
           Y +DSI++L+GL+ V+ RP MYIG TD E GLHH+++E +DNA+DE   G    I V L+
Sbjct: 242 YTSDSIRVLEGLEPVRMRPGMYIGSTDSE-GLHHLVWEAIDNAVDEVENGDCRRIVVVLH 300

Query: 70  MDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF------NQKSYKVSGGLHG 122
            D  S TV+D+GRGIP D+H + G+SA E + T+LHAGGKF         SY  +GGLHG
Sbjct: 301 ADRRSVTVADDGRGIPCDVHPQTGLSALETVFTKLHAGGKFSPASQTGASSYAFAGGLHG 360

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
           VG SVVNALSS L++ + R+G ++ +SF  G + +PL V  S     G 
Sbjct: 361 VGSSVVNALSSQLRVSVLRDGKLHAISFSRGQVVSPLTVQTSPSLSRGN 409



 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 223/479 (46%), Gaps = 37/479 (7%)

Query: 309  GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             S +   ++ G+  REG   V+S+KM +  F  QTK+KL + +VR +VE  V D L  + 
Sbjct: 776  NSHEKSLNIPGEFLREGLVGVVSLKMREAEFEGQTKKKLGNKKVRGIVEELVTDALLNYF 835

Query: 369  EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV---LDIASLPGKLADCSERDPKKS 425
            E HP   + +++K   A     AA+ ARD  R K     L +  LPGKL+DCS  + ++ 
Sbjct: 836  ERHPQNLQKLLQKATAARAAAAAAKAARDFARAKQQSSSLHLTLLPGKLSDCSPTNARER 895

Query: 426  ---ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER-ARFDKMLSSQEIGTLITAL 481
               ELF+VEG+SA GSAKQ R R  QAILPLRGKILNVE+   F ++  ++E+  L+ AL
Sbjct: 896  LSKELFIVEGESAAGSAKQARDRRTQAILPLRGKILNVEKLGNFARIFENEELKALVAAL 955

Query: 482  GTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
            G  +   G+ S D++ LRY ++II+TDADVDGAHIR+LLLTFFFR  P L   G +++  
Sbjct: 956  GISVTKAGEVSADLDGLRYSRVIILTDADVDGAHIRSLLLTFFFRLQPELFRQGRVFVAC 1015

Query: 539  PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
            PPL+ I        +   +        +  S       D                     
Sbjct: 1016 PPLFKIAHFPVPHKLL--QDATAAFRKRPCSRATSAVPDEARA----------------- 1056

Query: 599  KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658
              ++D + + ++   E    +G    +         + +   R+  +     +S      
Sbjct: 1057 --VQDAHTDEEERGDESDDEAGRGGGKRLATETYVWSDEEVKRVFEVLRMHRESRKKEQR 1114

Query: 659  NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718
                   +  RGV    VL G       ++       R  E             +     
Sbjct: 1115 GPG----KRMRGVAADAVLSGGEKPEHTAREPDRDDGRDGEREGEQDQEEGEERRCSDKT 1170

Query: 719  PCSLLD--TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
               LL+      +   G+++QR+KGLGEM   QL  TT++P TR L ++ + DA    +
Sbjct: 1171 VPGLLEGEADEQLSLPGVTLQRFKGLGEMQPEQLRRTTMSPVTRILKKISVADAEAVSE 1229


>gi|148762417|dbj|BAF63910.1| DNA gyrase subunit B [Virgibacillus necropolis]
          Length = 325

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 157/328 (47%), Positives = 225/328 (68%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALSS L++ +  +G ++ + F  G+    + V G   + TGT V
Sbjct: 1   YKVCGGLHGVGASVVNALSSNLEVYVHLDGKVHFLGFERGVPQEEIKVIGDT-DITGTIV 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P ++IF+    +++DTL  R+REL+FLN  + ISL DKR+ E   +  +Y+GGI ++
Sbjct: 60  HFKPDTEIFTETTSYDFDTLAIRVRELAFLNKGLSISLEDKRNDEEP-VNYYYEGGISSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y++R ++ L   P  I+     I++++A+++NDG+  N+  F NNI   +GGTH SG 
Sbjct: 119 VEYINRSREVLH-EPFYIEAEDQGITVEVAIQYNDGFASNIYSFANNIHTHEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K++  ++ GDD REG T+++SIK PDP+F  QTK KL SSEV
Sbjct: 178 KTGLTRVINDYARKNNLFKENDPNLTGDDVREGMTAIISIKHPDPQFEGQTKTKLGSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V +S  ++  S +L E+P  AKI+V+K L AS  R AA++AR+LTRRK  L+I++LPG
Sbjct: 238 RTVTDSMFSEAFSKFLFENPSVAKIVVEKGLMASRARAAAKKARELTRRKSALEISNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|3510608|gb|AAC33553.1| topoisomerase IV subunit B [Chlamydia trachomatis]
          Length = 554

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 143/562 (25%), Positives = 241/562 (42%), Gaps = 49/562 (8%)

Query: 51  NAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR--LHAGGK 108
           NAIDE + GY   I +T +     ++ D GRGIP             VI     ++ G K
Sbjct: 1   NAIDEFVMGYGHTIHITGDA-HELSIRDEGRGIPLGK----------VIDCVSKINTGAK 49

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           + Q  +  S GL+GVG+  VNALS    +R  R     + SF  GIL +     G+  + 
Sbjct: 50  YTQDVFHFSVGLNGVGLKAVNALSQHFSVRSVRNKKFLKASFSKGILLH--TEQGATQDP 107

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEV F P  ++F    F  + L+ ++R+ ++L+  + I    +R             G
Sbjct: 108 DGTEVVFSPDHELFENFSFQVEFLKKKIRQYTYLHPGLTIIYNGERIVS--------TRG 159

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +        +          +         +       +   E    F N     DGGTH
Sbjct: 160 LLDLFEEEVQTPLLYSPITFQYSD------LAFLFSHTETSSEQYFSFVNGQETTDGGTH 213

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L   +  + + +  +  K+             D REG    ++IK+  P F SQTK KL 
Sbjct: 214 LVAFKEGIVKGVNEFFGKN---------FSSQDIREGLAGCIAIKIASPIFESQTKNKLG 264

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRRKGVLDI 407
           ++ +R+ +   V + + + L+++P  A+ I +K+      R  A    ++L  ++  L  
Sbjct: 265 NTNIRAELAKRVKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHY 324

Query: 408 ASLPGKLADCS----ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                +             K S +F+ EG+SA  S    R+   QA+  LRGK +NV  +
Sbjct: 325 KIPKLRDCKFHLTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSS 384

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           + + +  + E+  L TALG         +  LRY+++I+ TDADVDG HIR L++TFF +
Sbjct: 385 KEETIYKNDELFYLATALGL----HKDSLQNLRYNQVILATDADVDGMHIRNLMITFFLK 440

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGV 581
               L+ +  L+I++ PL+ +    +  Y   EE     + +    E           G 
Sbjct: 441 TFLPLVASNHLFILETPLFKVCHKDATFYCYSEEEKLSTIEHIGKKESSLEITRFKGLGE 500

Query: 582 ISKNDLRNFIDDALKIDKLIKD 603
           IS  + ++FI   +++  +   
Sbjct: 501 ISPKEFKSFIGADMRLTPVSLR 522



 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 36/120 (30%)

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGEMNASQ-- 749
           SN +      +  +               L TI  IG+K   + + R+KGLGE++  +  
Sbjct: 448 SNHLFILETPLFKVCHKDATFYCYSEEEKLSTIEHIGKKESSLEITRFKGLGEISPKEFK 507

Query: 750 -------------LWET-TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
                        L +T TL+    +LL+            F   MG   + RR FI EN
Sbjct: 508 SFIGADMRLTPVSLRDTETLD----TLLQ------------FY--MGKNTKERRLFIIEN 549


>gi|210062246|gb|ACJ06172.1| GyrB [Aeromonas salmonicida]
          Length = 325

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 182/327 (55%), Positives = 240/327 (73%), Gaps = 2/327 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  L L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ 
Sbjct: 1   SDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEI 60

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+        
Sbjct: 61  LAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFS 118

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
             +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SK
Sbjct: 119 TEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+
Sbjct: 179 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VE
Sbjct: 239 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKIL 458
           GDSAGGSAKQGR+R+NQAILPL+GKIL
Sbjct: 299 GDSAGGSAKQGRNRKNQAILPLKGKIL 325


>gi|282599187|ref|YP_003358499.1| topoisomerase II large subunit [Shigella phage phiSboM-AG3]
 gi|226973493|gb|ACO94246.1| topoisomerase II large subunit [Shigella phage phiSboM-AG3]
          Length = 637

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 127/597 (21%), Positives = 220/597 (36%), Gaps = 70/597 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESG-------------------- 40
           MSD I          + L  ++ +  RP  ++G      G                    
Sbjct: 1   MSDKIDI----ERKYKKLTHVEHILLRPERHLGSIRSSVGTVWVYDPTKDQVIFRDNFEY 56

Query: 41  ---LHHMIYEVLDNAIDESLEGYAD---IITVTLNM-DGSCTVSDNGRGIPTDLHKEEGI 93
              L     E++ N +D S          ITVT++  +G   V+DNG GIP   H     
Sbjct: 57  SPALIKQFDEIITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNG-GIPVVKHGVTNE 115

Query: 94  SAAEVIMTRLHAGGKFNQK--SY--KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149
              E++   L+AG  FN +   Y  + SGG +G G S+VN  S W ++        Y   
Sbjct: 116 WLPEMLFGSLYAGSNFNDEDEEYNNQKSGGQNGEGASLVNVFSKWFRVATSDGKKSYAQL 175

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TLQHRLRELSFLNSSV 206
           F + +      V  +   + GT + ++P      V+  + +    +  R  E++  N  +
Sbjct: 176 FEDNMSKKSNPVISNTPKEFGTTIAWIPDYARLGVKGLDQNNLLMIYRRAFEVAACNPRL 235

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           ++ L  K+    R                                   ++    +A+  +
Sbjct: 236 KVVLNGKQIRIDRFGHFVDY--------------------FHAGSAVDESGEWSVAVAPS 275

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            G   +   + N+I    GG H+  +   +   I   + K       K  +     +   
Sbjct: 276 SGTFMHA-SYVNSIATHIGGPHVDYVADQIVAAIRPQLVKK-----FKTELKPAVIKNHM 329

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           +  ++  + +PRF SQTKE++ +   +       +D L     E  +         L   
Sbjct: 330 SLFIAADINNPRFDSQTKERMTTPVSQFGTSYKPSDKLIRKALEFVMAGLSKELASLRNE 389

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
                  +A+    ++   +I       A     D     L L EGDSA       R  +
Sbjct: 390 QDDAEFEKAKKDISKRDYREIEKYYPATAR---GDRSGCSLLLTEGDSASNPILNARDTK 446

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
              + PLRGK +N   A   K+++++E   L T  G  +     DI+  RY + ++ TDA
Sbjct: 447 KIGLFPLRGKFINCLNAPRTKVMNNEEFKNLCTIHGGAVPGQPLDIS--RYPQTVVATDA 504

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           D DG HIR LL+T +    P  +  G L +++ P   +  GK +    +    E++L
Sbjct: 505 DDDGIHIRGLLITLYCTYWPEYVRQGRLKLLRTPYMRVWCGKVMHEFMNNAEYEEFL 561


>gi|195926966|dbj|BAG68370.1| gyrase B [Campylobacter fetus subsp. fetus]
          Length = 340

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 160/345 (46%), Positives = 223/345 (64%), Gaps = 6/345 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L L IKR+GN+Y   F  GI  N L       N TGT V F P  DIF V +
Sbjct: 1   VVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRTGTSVEFWPDDDIFEVTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L  R +EL++LN   +I++  K   +    T  ++GG+E+FV+  D +K   +  
Sbjct: 60  FDKQILSKRFKELAYLNP--RITINFKDQRDGFSETYHFEGGLESFVT--DINKSNPVSK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  +++ +D A+ +N+ Y EN+L F NNI   DGGTH +G R+ LTR IT+Y+  
Sbjct: 116 AVSFSGGEEDVIVDFALLYNETYTENLLSFVNNIKTPDGGTHEAGFRAGLTRAITNYIAA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +++S+K+P+P+F  QTK KL SS V+ +V+    D L  
Sbjct: 176 NAAAREKDTKITGDDIREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQKMTFDVLCK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDPKKS 425
           + EE+P+EAK I+ K L A+  R+AA++ARDLTR+K  L+     PGKLADC  +DP +S
Sbjct: 236 YFEENPIEAKAIMNKALMAARGREAAKKARDLTRKKDSLNSVGTLPGKLADCQSKDPSES 295

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L 
Sbjct: 296 EIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILK 340


>gi|89143176|emb|CAJ57485.1| DNA gyrase subunit B [Microbacterium chocolatum]
          Length = 375

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 156/376 (41%), Positives = 229/376 (60%), Gaps = 21/376 (5%)

Query: 131 LSSWLKLRIKREGNIYEMSF-INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           LSS L++ +KR+G+++  S+   G+   PL   G    +TGT +TF P   IF    F+Y
Sbjct: 1   LSSRLEVEVKRQGSVWRQSYATGGVPQAPLAK-GEDSTETGTTITFWPDDTIFETVVFDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSP---------------EPREITMFYKGGIEAFVS 234
           DTL+ R ++++FLN  ++ISL D+R                 +PR  +  Y+ G+  +V 
Sbjct: 60  DTLRTRFQQMAFLNKGLRISLRDERPEGLVDIDGLADADAAPQPRSDSFLYERGLVDYVE 119

Query: 235 Y--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +    RH + +    I ++       I+++LAM+W   Y ENV  F N I   +GGTH  
Sbjct: 120 HLNRVRHAEVVNDEIIEVESEDTERKIAMELAMQWTTSYTENVFTFANTINTHEGGTHEE 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +  Y       K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL ++
Sbjct: 180 GFRAALTTLVNRYARAQNLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNT 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E ++ V+  V D L  W + +P++AK +++K +DA+  R AAR+AR+  RRK V + A++
Sbjct: 240 EAKAFVQKVVGDKLGDWFDRNPVQAKNVIRKAIDAASARMAARKARETARRKSVFESAAM 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           P KL DC+ +DP  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK LS
Sbjct: 300 PDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALS 359

Query: 471 SQEIGTLITALGTGIG 486
           ++E+  +I A GTGIG
Sbjct: 360 NKEVQAMIQAFGTGIG 375


>gi|308234846|ref|ZP_07665583.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
           vaginalis ATCC 14018]
          Length = 146

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/147 (53%), Positives = 103/147 (70%), Gaps = 1/147 (0%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M  N     YDADS+ +L+GLDAV+KRP MYIG TD + GL H ++E++DNA+DE+L G 
Sbjct: 1   MVSNKDREQYDADSLTVLEGLDAVRKRPGMYIGTTDSQ-GLMHCLWEIIDNAVDEALAGA 59

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
            D I VTL+ DGS  V+DNGRGIP D+  +  ++  EV++T+LHAG KF   SY  +GGL
Sbjct: 60  CDHIIVTLHDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGL 119

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYE 147
           HGVG SVVNALS  L + + R+G  + 
Sbjct: 120 HGVGSSVVNALSLRLDVEVDRDGKTHH 146


>gi|302122538|gb|ADK92938.1| DNA gyrase subunit B [Geobacillus sp. C12]
          Length = 327

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 146/318 (45%), Positives = 209/318 (65%), Gaps = 3/318 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS WL++ + R+G I+   +  G     L V G   + TGT   F P  
Sbjct: 12  LHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDP 70

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    F+Y+TL  RLREL+FLN  ++I+L D+R    +     Y+GGI ++V +L+R
Sbjct: 71  EIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNE-YVYEGGIRSYVRHLNR 129

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ L + PI I G RD I++++A+++NDGY  N+  F NNI   +GGTH SG + ALTR
Sbjct: 130 TREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTR 189

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  K    K++  ++ GDD REG T+++SIK P P+F  QTK KL +S+ R+V ++
Sbjct: 190 IINDYARKQQIFKENDANLTGDDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDA 249

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             ++    +L E+P  A+ IV+K + A+  R AA++AR+LTRRK  L+I+ LPGKLADCS
Sbjct: 250 VFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISXLPGKLADCS 309

Query: 419 ERDPKKSELFLVEGDSAG 436
            RDP  SEL++VEGDSAG
Sbjct: 310 SRDPSISELYVVEGDSAG 327


>gi|164456765|dbj|BAF97875.1| gyrase B subunit [Vibrio harveyi]
          Length = 278

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 145/280 (51%), Positives = 203/280 (72%), Gaps = 3/280 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQ 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GG
Sbjct: 60  TGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGG 118

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           I+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGT
Sbjct: 119 IQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGT 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 HLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           VSSEV+S VES + + LS +L E+P EAK++  K++DA+ 
Sbjct: 239 VSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAAR 278


>gi|110084484|gb|ABG49399.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|110084502|gb|ABG49408.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|110084504|gb|ABG49409.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|110084512|gb|ABG49413.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 332

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 194/335 (57%), Positives = 251/335 (74%), Gaps = 3/335 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SS
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 332


>gi|30793694|gb|AAM52909.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 320

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 184/323 (56%), Positives = 239/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   S+K K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSEKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARPREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|195947060|dbj|BAG68440.1| gyrase B [Campylobacter fetus]
 gi|195947062|dbj|BAG68441.1| gyrase B [Campylobacter fetus subsp. venerealis]
          Length = 340

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 160/345 (46%), Positives = 221/345 (64%), Gaps = 6/345 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L L IKR+GN+Y   F  GI  N L       N TGT V F P  DIF V +
Sbjct: 1   VVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRTGTSVEFWPDDDIFEVTE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+   L  R +EL++LN  + I+  D+R           +GG+E+FV+  D +K   +  
Sbjct: 60  FDKQILSKRFKELAYLNPKITINFKDQRDGFSETYHF--EGGLESFVT--DINKSNPVSK 115

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G  +++ +D A+ +N+ Y EN+L F NNI   DGGTH +G R+ LTR IT+Y+  
Sbjct: 116 AVSFSGGEEDVIVDFALLYNETYTENLLSFVNNIKTPDGGTHEAGFRAGLTRAITNYIAA 175

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +  +++    + GDD REG  +++S+K+P+P+F  QTK KL SS V+ +V+    D L  
Sbjct: 176 NAAAREKDTKITGDDIREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQKMTFDVLCK 235

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDPKKS 425
           + EE+P+EAK I+ K L A+  R+AA++ARDLTR+K  L+     PGKLADC  +DP +S
Sbjct: 236 YFEENPIEAKAIMNKALMAARGREAAKKARDLTRKKDSLNSVGTLPGKLADCQSKDPSES 295

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           E++LVEGDSAGGSAKQGR R  QAILPLRGKILNVE++R DK+L 
Sbjct: 296 EIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILK 340


>gi|110084482|gb|ABG49398.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|110084510|gb|ABG49412.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 332

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 194/335 (57%), Positives = 250/335 (74%), Gaps = 3/335 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SS
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 332


>gi|153869399|gb|ABS53030.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869401|gb|ABS53031.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869403|gb|ABS53032.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869405|gb|ABS53033.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869407|gb|ABS53034.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869409|gb|ABS53035.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869411|gb|ABS53036.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869413|gb|ABS53037.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869415|gb|ABS53038.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869417|gb|ABS53039.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
          Length = 311

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 169/314 (53%), Positives = 232/314 (73%), Gaps = 4/314 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L IKR+G +Y+ ++ +G+    L V G+  + TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELMIKRDGKVYQQTYYHGVPQASLAVVGATEH-TGTTVQ 59

Query: 175 FLPSS-DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS     +   F Y+ L  RLRELSFLNS+V I L DKR+ +       YKGGI+AFV
Sbjct: 60  FWPSWATFTNNTVFQYEILAKRLRELSFLNSAVSIRLQDKRNNKE--DYFHYKGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +YL+++K P+          +D+I +++A++WN+G+ E++ CFTNNIPQ  GGTHLSG R
Sbjct: 118 AYLNKNKTPIHPHVFYFSTEKDSIGVEIALQWNNGFQESIYCFTNNIPQSTGGTHLSGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +A+TR + +Y++K    KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AAITRTMNAYIDKEGYGKKAKVNPTGDDTREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           SVVES +N+ L A+L E+P +AKI+V K+++A+ VR+AAR+AR++TRRKG L++ASLPGK
Sbjct: 238 SVVESLINERLVAYLLENPHDAKIVVAKIIEATRVREAARKAREMTRRKGALELASLPGK 297

Query: 414 LADCSERDPKKSEL 427
           LADC ER+P  SEL
Sbjct: 298 LADCRERNPVLSEL 311


>gi|110084498|gb|ABG49406.1| DNA gyrase subunit beta [Aeromonas media]
 gi|110084500|gb|ABG49407.1| DNA gyrase subunit beta [Aeromonas media]
 gi|110084506|gb|ABG49410.1| DNA gyrase subunit beta [Aeromonas media]
          Length = 332

 Score =  266 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 192/335 (57%), Positives = 251/335 (74%), Gaps = 3/335 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SS
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 332


>gi|315940107|gb|ADU56232.1| DNA gyrase subunit B [Nocardia harenae]
          Length = 408

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 163/364 (44%), Positives = 233/364 (64%), Gaps = 1/364 (0%)

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            + +  T  Y GG+E FV +++R K+P+  S +   G      +++AM+WN GY E+V  
Sbjct: 43  HKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGHELEVAMQWNSGYSESVHT 102

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F N I   +GGTH  G R+ALT  +  Y +     K+   ++ GDD REG  +++S+K+ 
Sbjct: 103 FANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVG 162

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P+F  QTK KL ++EV+S V+   N+ L  W E +P +AK IV+K + ++  R AAR+A
Sbjct: 163 EPQFEGQTKTKLGNTEVKSFVQKTCNEHLQHWFEANPADAKTIVQKAVSSAQARVAARKA 222

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+L RRK   D+  LPGKLADC  +DP+KSE+++VEGDSAGGSAK GR    QAILP+RG
Sbjct: 223 RELVRRKSATDLGGLPGKLADCRSKDPQKSEIYIVEGDSAGGSAKSGRDSMYQAILPIRG 282

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++M DADVDG HI T
Sbjct: 283 KIINVEKARIDRVLKNNEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDGQHIST 341

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LLLT  FR M  L+ +G +Y+ +PPLY +   +        +   D L+   L+   ++ 
Sbjct: 342 LLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRGEAEFAYSDRERDGLLEAGLAAGKKIN 401

Query: 576 CDSK 579
            D  
Sbjct: 402 KDDG 405


>gi|311992997|ref|YP_004009863.1| DNA topoisomerase subunit [Enterobacteria phage CC31]
 gi|284177835|gb|ADB81501.1| DNA topoisomerase subunit [Enterobacteria phage CC31]
          Length = 614

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 144/611 (23%), Positives = 245/611 (40%), Gaps = 68/611 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGD----------------TDGESGLHHMIYEVLDNAIDESLE 58
           I+IL   + + KR  MYIG                      G+  +I E++DN++DE++ 
Sbjct: 7   IKILSDREHIIKRSGMYIGSSAMEAHERFLFGKFQSVTYVPGVIKLIDEIIDNSVDEAIR 66

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIP---TDLHKEEGISAAEVIMTRLHAGGKFNQK 112
               +A+ I+V L       V+DNGRG+P       + + I       TR  AGG F   
Sbjct: 67  TNFKFANKISVEL-KGNKVIVTDNGRGLPQAPVVTPEGDEIPGPVAAWTRPRAGGNFGDD 125

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD-----NPLVVTGSAGN 167
           + + +GG++GVG ++ N  S           N   +   NG  +      P         
Sbjct: 126 AERKTGGMNGVGSALTNIFSVTFAGATCDGQNEIIVRCSNGAENISWDSKPAKEKEFIQT 185

Query: 168 DTGTEVTFLPSSDIFSV---QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            TGT V+F+P    F      + +   +  RL+ L+ +   ++     K+          
Sbjct: 186 KTGTRVSFIPDFSHFESSGLTEVDESIVLDRLQTLAVVFPDIEFKFQGKKV--------- 236

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
             GG + F    D       +    I             R +DG+ +  L + NNI    
Sbjct: 237 -NGGFKKFAKQFDEEAIVADEDNCSI----------AIGRSDDGFRQ--LTYVNNIHTSK 283

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQT 343
           GG+H+  +   L+ ++   +++ +  + +K        +E FT V+ ++ M + RF SQT
Sbjct: 284 GGSHVDLVVDELSNELIPMLKRKYKLEVNKAR-----IKECFTFVMFVRDMSNMRFDSQT 338

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRRK 402
           KE+L S            +     L +  ++++ I   +++A + R  AA +A +    K
Sbjct: 339 KERLTSPWGE---VKAHLNLDYKKLAQQVMKSEAIHMPIIEAMLARKLAAEKAAETKAAK 395

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                        +    D +++ LFL EGDSA G     R R+     PLRGK LN   
Sbjct: 396 AASKAKVAKHIKPELYGNDKEETTLFLTEGDSAIGYLLTTRDRKLHGGYPLRGKFLNTWG 455

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522
               + + ++E+  +    G  IG+D      L Y  I IMTDADVDG       L  FF
Sbjct: 456 MTAAEAMKNKEVFDICAITGLTIGED---YENLNYKNIAIMTDADVDGTGSIYPSLLAFF 512

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
              P L   G +  +K P+  +++G   ++       E       L+     +    G +
Sbjct: 513 SNWPRLFEEGRIRFVKTPVIIMSKGDKQKWYYTAAEYEAEKDE--LAGWKLRYIKGLGSL 570

Query: 583 SKNDLRNFIDD 593
            +++    I +
Sbjct: 571 EEDEYERVIQE 581


>gi|207107910|dbj|BAG71967.1| DNA gyrase subunit B [Gordonia otitidis]
          Length = 396

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 164/393 (41%), Positives = 227/393 (57%), Gaps = 33/393 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L I   G  +E ++       PL + G A   TGT V F   S+IF 
Sbjct: 1   GISVVNALSTKVELEINYGGYHWEQTYNYAKP-GPL-IKGDATRKTGTTVRFWADSEIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------------------------- 216
              ++ +T+  RL+E++FLN  + I+L D+R                             
Sbjct: 59  TTTYSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDEDTAEKPKTAEEETTA 118

Query: 217 ----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
               +PR  T  Y  G+  ++ +L+R K P+ QS I          +++AM+WN GY E+
Sbjct: 119 PAVSKPRTRTYHYPDGLVDYIKHLNRTKTPIHQSVIGFTAKGPGHEVEIAMQWNSGYSES 178

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S+
Sbjct: 179 VHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLAAVISV 238

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P EAKIIVKK +D++  R AA
Sbjct: 239 KVADPQFEGQTKTKLGNTEVKSFVQRTCNEHLGHWFEANPAEAKIIVKKAVDSAQARMAA 298

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+L RRK   DI  LPGKLADC   DP K E++ VEGDSAGGSA  GR    QAILP
Sbjct: 299 RKARELVRRKTATDIGGLPGKLADCRSIDPTKCEVYFVEGDSAGGSANSGRDSMYQAILP 358

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           +RGKI+NVE+AR D++L + E+ ++ITA GTGI
Sbjct: 359 IRGKIINVEKARIDRVLKNTEVQSIITAFGTGI 391


>gi|295979457|dbj|BAJ07401.1| DNA gyrase subunit B [alpha proteobacterium ISHR1]
          Length = 246

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 147/246 (59%), Positives = 184/246 (74%)

Query: 95  AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154
           AAEVIMT+LHAGGKF+  SYKVSGGLHGVGVSVVNALS WL+LR+ R G  +   F +G 
Sbjct: 1   AAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSVWLELRVWRNGKEHVARFEHGE 60

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             + L V G  G+ TGTEV FL S+D FS  D++++TL+ RLREL+FLNS V+I L D+R
Sbjct: 61  TVDHLKVVGDCGDRTGTEVRFLASTDTFSNLDYSFETLEKRLRELAFLNSGVRILLEDER 120

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
             EP +  + Y GG++ FV YLDR K P+M+ PI I G RD+I I++AM WND YHE VL
Sbjct: 121 PAEPLKTELHYDGGVKEFVKYLDRSKSPMMEDPIYITGERDDIGIEVAMWWNDSYHETVL 180

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            FTNNIPQ+DGGTHL+G R ALTR +T Y ++S  +K++K S  GDD REG T VLS+K+
Sbjct: 181 PFTNNIPQRDGGTHLAGFRGALTRTLTKYAQESGIAKREKVSFTGDDAREGLTCVLSVKV 240

Query: 335 PDPRFS 340
           PDP+FS
Sbjct: 241 PDPKFS 246


>gi|295979467|dbj|BAJ07406.1| DNA gyrase subunit B [Leptothrix sp. MBIC 3364]
          Length = 275

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 134/275 (48%), Positives = 178/275 (64%), Gaps = 25/275 (9%)

Query: 62  DIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117
           D I VT++ D S +V DNGRGIPT    D   E   SAAE+ +T LHAGGKFNQ SYKVS
Sbjct: 1   DDIVVTIHTDNSISVIDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVS 60

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALS WL+L I+R+G ++ + F  G+              +P+ + G  
Sbjct: 61  GGLHGVGVSCVNALSKWLRLTIRRDGKVHYLEFRKGVPQDRVLEQRDGFEVSPMKIIGET 120

Query: 166 GNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            +  GTEV FLP  +IF    DF+YD L  RLRELSFLN+ V+I L+D+R  +       
Sbjct: 121 -DKRGTEVHFLPDDEIFQQNADFHYDILAKRLRELSFLNNGVKIRLVDERHNKE--DNFA 177

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNN 279
           + GG++ FV ++++ KK L  +     G +      +I +++AM+WNDGY ENVLCFTNN
Sbjct: 178 FAGGVKGFVEFINQGKKVLHPNVFHAVGEKLSDQNTSIGVEVAMQWNDGYSENVLCFTNN 237

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           IPQ+DGGTHL+GLR+A+TR I  Y+E +  +KK K
Sbjct: 238 IPQRDGGTHLTGLRAAMTRVINKYIEDNELAKKAK 272


>gi|106895901|gb|ABF82649.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|106895903|gb|ABE96843.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 331

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 192/334 (57%), Positives = 250/334 (74%), Gaps = 3/334 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+S
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 331


>gi|110084490|gb|ABG49402.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 332

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 192/335 (57%), Positives = 250/335 (74%), Gaps = 3/335 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PSS IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSS-GTGTEVRFWPSSTIFTDTLYHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+           D 
Sbjct: 60  RELSFLNSGVSIRLHDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEHDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SS
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 332


>gi|260495356|ref|ZP_05815483.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_33]
 gi|260197134|gb|EEW94654.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_33]
          Length = 299

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/299 (38%), Positives = 182/299 (60%), Gaps = 1/299 (0%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF   +YKVSGGLHGVGVSVVNALS WL++ +++ G ++   +  G  +  +
Sbjct: 1   MTVLHAGGKFENDNYKVSGGLHGVGVSVVNALSEWLEVEVRKNGTVHYQKYHRGKPEEDV 60

Query: 160 VVTGSA-GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
            V G+   N+ GT V F    +IF    +NY TL +RL+EL++LN  + I L D R  E 
Sbjct: 61  KVIGTCDENEHGTTVRFKADGEIFETLVYNYFTLSNRLKELAYLNKGLTIILSDLRKDEK 120

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
           +E    + GGI  F++ + + +  +++ P  +   +DN+ +D+   +    +E +  F N
Sbjct: 121 KEEIYKFDGGILDFLNEIVKDETTIIEKPFFVSAEQDNVGVDVTFTYTTSQNEVIYSFVN 180

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           +I   +GGTH+ G R+ALT+ I    +     K     ++G+D REG   ++S K+P P+
Sbjct: 181 DINTHEGGTHVQGFRTALTKVINDVGKAQGLLKDKDGKLMGNDIREGVVGIISTKIPQPQ 240

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           F  QTK KL +SEV  +V + V++ L  +LE++P   KII++K+L++   R+AA++AR+
Sbjct: 241 FEGQTKGKLGNSEVSGIVNTVVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARE 299


>gi|330367273|dbj|BAK19431.1| DNA gyrase subunit B [Helicobacter mesocricetorum]
          Length = 349

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 160/354 (45%), Positives = 228/354 (64%), Gaps = 5/354 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L++ I + GNIY+ +F  GI  + L + G +  + GT + F+P ++IF   +F  
Sbjct: 1   ALSKNLQMTIYKNGNIYQQNFQQGIPQDELQIIGKSK-ENGTIIEFIPDNEIFETTNFQR 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  R +EL++LN  + I   D+R            GG+  FVS  D +KK L+ S I 
Sbjct: 60  DILTKRFKELAYLNKQITIYFKDEREGFEEIYHF--DGGLNQFVS--DLNKKTLISSVIN 115

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
            +     +   +A+ +NDG+ E VL F NNI   DGGTH +G R+ LTR IT+Y+E +  
Sbjct: 116 FESLDSEVETQIALAYNDGFEEKVLSFVNNIKTSDGGTHEAGFRTGLTRAITNYIEANAN 175

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           +++    + GDD REG  +++S+K+ DP+F  QTK KL SS VR +V+    + L  + E
Sbjct: 176 AREKDFKITGDDIREGLIAIVSVKVIDPQFEGQTKGKLGSSFVRPIVQKLTFEKLMKFFE 235

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EA+ I++K L A+  R+AA++AR+LTR+K    + +LPGKLADC  +DP  SE++L
Sbjct: 236 ENPNEARAIMEKALLAARGREAAKKARELTRKKENFSVGTLPGKLADCQSKDPSISEIYL 295

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           VEGDSAGGSAKQGR R +QAILPL+GKILNVE++R DK+L S+EI  LI ALG 
Sbjct: 296 VEGDSAGGSAKQGRDRVSQAILPLKGKILNVEKSRLDKILKSEEIKNLIIALGC 349


>gi|295841359|dbj|BAJ07093.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841361|dbj|BAJ07094.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841363|dbj|BAJ07095.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841365|dbj|BAJ07096.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841367|dbj|BAJ07097.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841369|dbj|BAJ07098.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841371|dbj|BAJ07099.1| gyrase B [midgut symbiont of Parastrachia japonensis]
          Length = 321

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 175/324 (54%), Positives = 237/324 (73%), Gaps = 4/324 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SYKVSGGLHGVGVSVVNALSS LKL I REG  +   + NG    PL + G + 
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSSKLKLIINREGKKFYQIYFNGKPAAPLSIIGKS- 59

Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           N TGT V F P+ +IF+   +F Y  L  RLRELSFLNSSV I L D+R  +       Y
Sbjct: 60  NLTGTYVQFWPNHNIFNKIINFEYQILAKRLRELSFLNSSVSIDLKDERLDKR--DHFQY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           KGGI+ F+ YL+++K P+ Q  +      ++ISI +A++WND + EN+ CFTNNIPQ+DG
Sbjct: 118 KGGIKEFIEYLNKNKMPIHQKVLYFSSQTESISIQVALQWNDSFQENIYCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+A+TR I +Y++K + +KK K +VIGDD REG  +++S+++ +P+FSSQTK+
Sbjct: 178 GTHLAGFRAAITRTINTYMDKEYYNKKSKINVIGDDTREGLIAIISVRVQNPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KL+SSEV+S VE  +N+ L  +L E+P +AKII+ K++DAS  R+A+RRAR++TRRKG L
Sbjct: 238 KLISSEVKSAVEQKMNEWLIEFLLENPSDAKIIIGKIVDASRAREASRRAREITRRKGAL 297

Query: 406 DIASLPGKLADCSERDPKKSELFL 429
           D+A LPGKLADC ER+P  SE++L
Sbjct: 298 DLACLPGKLADCQERNPALSEIYL 321


>gi|323146966|gb|ADX32776.1| DNA gyrase B subunit [endophytic bacterium 15(2011)]
          Length = 218

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/221 (44%), Positives = 140/221 (63%), Gaps = 19/221 (8%)

Query: 44  MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVI 99
           +++EVLDN+IDE+L GY + I V ++ D S +++DNGRG+PT    D   E   SAAE++
Sbjct: 1   LVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIV 60

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---- 155
           MT LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WL+L ++R+G  + M F  G+     
Sbjct: 61  MTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRV 120

Query: 156 --------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
                    +P+ V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+
Sbjct: 121 IEEIGGIAVSPIQVVGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVR 179

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           I L D+RS +       + GG++ FV Y+++ K  L  +  
Sbjct: 180 IRLTDQRSGKE--DDFAFVGGVKGFVEYINKTKSVLHPTIF 218


>gi|325130728|gb|EGC53466.1| DNA topoisomerase 4 subunit B [Neisseria meningitidis OX99.30304]
          Length = 158

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/165 (50%), Positives = 109/165 (66%), Gaps = 11/165 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MAKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK----SYKV 116
           A  I V ++ DGS +V DNGRGIP  LH EEG+   E++ TRLHAGGKFN+K    +Y  
Sbjct: 54  ATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKFNKKDGGSAYAF 113

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           SGGLHGVGVSV NALS+ L++ +KREG I+ + F  G +  PL  
Sbjct: 114 SGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQ 158


>gi|261488460|emb|CAU94905.1| DNA gyrase subunit B [Pelomonas puraquae]
          Length = 340

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 174/344 (50%), Positives = 235/344 (68%), Gaps = 22/344 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VN LS +L+L +++ G +
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKFLRLTVRQNGKV 59

Query: 146 YEMSFINGILDN------------PLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTL 192
           + + F  GI  N            P+ V G   +  GTEV FLP ++IF   + ++YD L
Sbjct: 60  HFLEFAKGIPQNGESVMVDGVETRPMKVIGET-DKRGTEVHFLPDTEIFKENNDYHYDIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I L+D+RS +       Y GG++ FV ++++ K  L  +     G
Sbjct: 119 AKRLRELSFLNNGVKIRLVDERSNKE--DNFAYAGGVKGFVEFINKGKTTLHPNIFHAVG 176

Query: 253 SR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +       I +++AM+WNDG++ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 EKVSEQGTTIGVEVAMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR+ VE  V+  L+ +
Sbjct: 237 ELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDY 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           L E+PL+AK I  K+LDA+  R+AAR+AR++TRRKGVLD   LP
Sbjct: 297 LLENPLDAKTICGKILDAARAREAARKAREMTRRKGVLDGLGLP 340


>gi|207107902|dbj|BAG71963.1| DNA gyrase subunit B [Gordonia hydrophobica]
          Length = 406

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 170/409 (41%), Positives = 243/409 (59%), Gaps = 33/409 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L IKR G  +  ++ +     PL   G+  ++TGT V+F    +IF 
Sbjct: 1   GISVVNALSTKVQLDIKRNGANWSQTYTHAEP-GPLEE-GAPTDETGTTVSFWADPNIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------------------------- 216
             +FN +T+  RL+E++FLN  + I+L D+R                             
Sbjct: 59  TTEFNIETIARRLQEMAFLNKGLTITLTDERIHEAVLEAEAEETEDGDASIKTEEQKADA 118

Query: 217 --EPREITMFYKGGIEAFVSYLDRHKK-PLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
             + +     Y  G+  ++ +L+   K P+ +S I I        +++AM+WN+G+ E+V
Sbjct: 119 VAKVKTRVYHYPDGLVDYIKHLNNRTKAPIHKSVIGITAKGTGHEVEIAMQWNEGFAESV 178

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S+K
Sbjct: 179 HTFANTINTAEGGTHEEGFRAALTSTVNKYAFDKKLIKEKDGKLSGDDIREGLAAVISVK 238

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + DP+F  QTK KL ++EV+S V+   N+ L+ W + +P EAK I++K  D+   R AAR
Sbjct: 239 VADPQFEGQTKTKLGNTEVKSFVQKTCNEHLALWFDANPAEAKTIIRKAADSQQARLAAR 298

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           RARDL RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAILP+
Sbjct: 299 RARDLVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAILPI 358

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 RGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 406


>gi|164456673|dbj|BAF97829.1| gyrase B subunit [Vibrio gigantis]
          Length = 279

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 147/281 (52%), Positives = 200/281 (71%), Gaps = 3/281 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI
Sbjct: 60  GTEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFEYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG H
Sbjct: 119 QAFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           SSEV+S VES + + LS +L E+P EAK +  K++DA+  R
Sbjct: 239 SSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARAR 279


>gi|323364329|gb|ADX42734.1| DNA gyrase subunit B [Bacillus beijingensis]
          Length = 349

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 168/350 (48%), Positives = 246/350 (70%), Gaps = 2/350 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYD 190
           S   ++ + R+G ++ ++F  G++   L VTG A  +TGT+V F    +IF+    + YD
Sbjct: 1   SERTEVTVARDGELHFIAFERGLVAEELRVTGKAE-ETGTQVRFKADPEIFTETTVYEYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L HRL+EL++LN  ++I+L D+R  E RE    Y+GGI+++V +++  K+P+ + PI +
Sbjct: 60  ILAHRLQELAYLNRGIRITLADERGEEVREDAYHYEGGIKSYVQHINEDKEPIHEEPIFL 119

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
           +G RD IS+++AM++N GY  N+  F NNI   +GGTH SG ++ALTR I  Y  K+   
Sbjct: 120 EGERDGISVEVAMQYNAGYASNLFSFANNINTYEGGTHESGFKTALTRVINDYARKNGLL 179

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           K ++ ++ G+D REG T+++SIK PDP+F  QTK KL +SEV  +V S  ++G   +L E
Sbjct: 180 KDNEANLSGEDAREGLTAIISIKHPDPQFEGQTKTKLGNSEVSQIVNSLFSEGFERFLME 239

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P  A++IV+K L A+  R AA++AR+LTRRK VL+I++LPGKL+DCS RDP  SEL++V
Sbjct: 240 NPTSARMIVEKGLMAARARVAAKKARELTRRKSVLEISNLPGKLSDCSSRDPAISELYIV 299

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           EGDSAGGSAK GR R  QAILPLRGKILNVE+A  +++LS+ EI  +ITA
Sbjct: 300 EGDSAGGSAKNGRDRHFQAILPLRGKILNVEKANINRILSNAEIRMMITA 349


>gi|218937737|gb|ACL13028.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 356

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 155/356 (43%), Positives = 235/356 (66%), Gaps = 2/356 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDF 187
           NALS+ L + + R+G  Y ++F +G +   L   G+    + GT V F P  +IF+    
Sbjct: 1   NALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIFTETTV 60

Query: 188 NYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
             D  L++R+REL+FLN  ++++  DKR          ++GGI+ +VS+L+R ++ L   
Sbjct: 61  FDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYHFEGGIKEYVSFLNRGQEVLFDE 120

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI ++G  + I +++++++  GY   ++ F NNI   +GG H +G ++ALTR +  Y  K
Sbjct: 121 PIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVNDYAHK 180

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +S+ R+ V+   ++  S 
Sbjct: 181 AKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKLGNSDARTAVDRAFSETFST 240

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  DP  SE
Sbjct: 241 FLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSNDPNXSE 300

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           LF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI TL TALG
Sbjct: 301 LFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTALG 356


>gi|218937733|gb|ACL13026.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus]
          Length = 356

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 156/356 (43%), Positives = 234/356 (65%), Gaps = 2/356 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDF 187
           NALS+ L + + R+G  Y ++F +G +   L   G+    + GT V F P  +IF+    
Sbjct: 1   NALSTKLNVTVMRDGKKYYIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIFTETTV 60

Query: 188 NYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
             D  L++R+REL+FLN  ++++  DKR          ++GGI+ +VS+L+R ++ L   
Sbjct: 61  FDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETYVYHFEGGIKEYVSFLNRGQEVLFDE 120

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI ++G  + I +++++++  GY   ++ F NNI   +GG H +G ++ALTR I  Y  K
Sbjct: 121 PIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVINDYAHK 180

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K++  ++ G+D REG T+V+S+K P P+F  QTK KL +S+ R+ V+   ++  S 
Sbjct: 181 AKILKENDDNLSGEDIREGMTAVISVKHPSPQFEGQTKTKLGNSDARTAVDRAFSETFST 240

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+ IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  DP  SE
Sbjct: 241 FLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSNDPNXSE 300

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           LF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D++L++QEI TL TALG
Sbjct: 301 LFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTALG 356


>gi|34419280|ref|NP_899293.1| topoisomerase II large subunit [Vibrio phage KVP40]
 gi|34332961|gb|AAQ64116.1| topoisomerase II large subunit [Vibrio phage KVP40]
          Length = 597

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 156/631 (24%), Positives = 265/631 (41%), Gaps = 83/631 (13%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----------------SGLHHM 44
           MS          D+ QIL     V KRP MYIG  D E                 GL  +
Sbjct: 1   MSKQ--------DNFQILSDKQHVLKRPGMYIGSVDREAHERFVLGEYKQIEYVPGLVKI 52

Query: 45  IYEVLDNAIDESLE---GYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAE 97
           I EV+DN++DE++     +A++I V +      T++DNGRGIP     D H  E +   E
Sbjct: 53  INEVIDNSLDEAIRTKFKFANVIEVKV-EGNRITIADNGRGIPQDKVIDPHGNELL-RPE 110

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
              TR  AG  F     + + G++GVG ++ N  S     +   +G    ++        
Sbjct: 111 AAWTRTKAGSNFEDD--RTTVGMNGVGAALTNYFSHQFIGKTC-DGKN-TVTVSCSNNAE 166

Query: 158 PLVVTGSAGNDTGTEVTFLPSSD---IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
            + V  S G   GT V F+P  +   +F +   + + ++ RL  LS     +      K+
Sbjct: 167 RIFVRTSKGGTQGTSVEFIPDFNRFGVFGISPQDEEIIKDRLAALSVAFPEITFKYNGKK 226

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                +      G   +F                          + L +  +D +  N  
Sbjct: 227 HAPTLKQYAKMFGTDVSFEFDN----------------------VALFIAASDEFRHN-- 262

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI-K 333
            F N +   +GGTH+    + L  ++   +++       K +V     + G T  L I  
Sbjct: 263 SFINGVHTINGGTHVDYFSNKLADELIPMIKRK-----HKINVPKPQLKNGLTIGLFIRN 317

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
             DP+F SQTKE+L SS  +  V  ++ D     + +  L    I+  +++A + +  A 
Sbjct: 318 FVDPKFDSQTKERLTSS--QGDVSPYLKDISYDKIAKKILADDDIIMPIIEALLAKQHAA 375

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
            AR+L R++      +   K+ D  +       LFL EG SA G   + R  +    +PL
Sbjct: 376 EARELARKQKK----AQNAKVVDHIKATMPGGTLFLTEGKSAIGYLIKVRDSKKHGGIPL 431

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA-H 512
           RGK+L+    R  K++ ++E+  +++ L   +G D  DI  + YH I I+ DADVDG   
Sbjct: 432 RGKVLSTWGKRPAKIMENKELCDIMSVLNIQLGND--DIRDMYYHDIGILVDADVDGKGS 489

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572
           I  LLL FF+   P L     +  ++ P+   T  K  ++      +++Y   +      
Sbjct: 490 IFPLLLAFFYN-WPELYKQKRIKFVRTPVVIATNKKETKWFYS---IDEYRKAKLSKTWK 545

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
             +    G +++ + +  I++ +  + +I D
Sbjct: 546 IRYIKGLGSLTEKEYKKVINEPVFDEIVIDD 576


>gi|270210838|gb|ACZ64696.1| DNA topoisomerase II beta subunit [Shewanella sp. KCCM 42936]
          Length = 343

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 196/345 (56%), Positives = 263/345 (76%), Gaps = 4/345 (1%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
            L+L I+REG +YE  + +G+ D P+   G A  +TGTE+ F PS+D F+   F++D L 
Sbjct: 1   KLQLTIRREGKLYEQFYSHGVPDAPIKEIGDA-INTGTEIRFWPSTDTFTDVLFHFDILA 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            R+RELSFLNS V + L+D+R  + R+    Y GGI AFV YL+ +K P+ +        
Sbjct: 60  KRVRELSFLNSGVGVRLVDER--DNRDEFFKYDGGISAFVDYLNVNKTPVNKDVFHFIQE 117

Query: 254 RDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
           R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK   +KK
Sbjct: 118 REDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEKEGYNKK 177

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L EHP
Sbjct: 178 GKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEQLGDYLIEHP 237

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE+++VEG
Sbjct: 238 NEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEG 297

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           DSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL
Sbjct: 298 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVTTL 342


>gi|93277208|gb|ABF06422.1| gyrase B [Streptomyces sp. MC3]
          Length = 378

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 159/379 (41%), Positives = 235/379 (62%), Gaps = 20/379 (5%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
            VVN LSS + + ++ +G+ +   +  G+   PL V      +TGT VTF    +I    
Sbjct: 1   CVVNGLSSKVAVEVRTDGHRWTPDYKMGVPTAPL-VKHEVTEETGTSVTFWADPEILETT 59

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGI 229
           +++++TL  R +E++FLN  + I L D+R                  E + +T  Y+GGI
Sbjct: 60  EYSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGADEKAEVKTVTYHYEGGI 119

Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
             FV Y   R  + +  + + ++    +  +S+++AM+WN GY E V  F N I   +GG
Sbjct: 120 VDFVKYLNSRKGEAVHPTVVSLEAEDKDKSLSLEVAMQWNSGYTEGVYSFANIIHTHEGG 179

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  QTK K
Sbjct: 180 THEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTK 239

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++E ++ V+  V + L+ WL+ +P+EA  I++K + A+  R AAR+ARDLTRRKG+L+
Sbjct: 240 LGNTEAKTFVQKAVYEHLNDWLDRNPVEAADIIRKGIQAATARVAARKARDLTRRKGLLE 299

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            ASLPGKLADC   DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D
Sbjct: 300 SASLPGKLADCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARID 359

Query: 467 KMLSSQEIGTLITALGTGI 485
           K+L +QEI  LI+A GTG+
Sbjct: 360 KILQNQEIQALISAFGTGV 378


>gi|261488452|emb|CAU94901.1| DNA gyrase subunit B [Pelomonas saccharophila]
          Length = 338

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 173/342 (50%), Positives = 234/342 (68%), Gaps = 22/342 (6%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VN LS +L+L +++ G +
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKFLRLTVRQNGKV 59

Query: 146 YEMSFINGILDN------------PLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTL 192
           + + F  GI  N            P+ V G   +  GTEV FLP ++IF   + ++YD L
Sbjct: 60  HFIEFAKGIPQNGESVVVDGFXTRPMKVIGET-DKRGTEVHFLPDTEIFKENNDYHYDIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I L+D+RS +       Y GG++ FV ++++ K  L  +     G
Sbjct: 119 AKRLRELSFLNNGVKIRLVDERSNKE--DNFAYAGGVKGFVEFINKGKTVLHPNIFHAIG 176

Query: 253 SRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +      NI +++AM+WNDG++ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 DKMSDQGTNIGVEVAMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR+ VE  V+  L+ +
Sbjct: 237 ELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDY 296

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           L E+PL+AK I  K+LDA+  R+AAR+AR++TRRKGVLD   
Sbjct: 297 LLENPLDAKTICGKILDAARAREAARKAREMTRRKGVLDGLG 338


>gi|30793696|gb|AAM52910.1| DNA gyrase subunit beta [Aeromonas sp. CFAE35]
          Length = 320

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 239/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   S+K K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSEKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVRDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARPREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|188090390|gb|ACD49429.1| gyrase subunit B [Xanthomonas albilineans]
          Length = 288

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ +      +D   + 
Sbjct: 61  DDNALNVYLASSAVEGAALIPASGEPPITGAALEKLLLLFASANETVARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD--ILVKRI 667
             +     +      E ++  ++     + NR N  + +    +  +       +L+ R 
Sbjct: 121 ALIDLPPLDVAQLEAEGERHPSLDALQMVLNRGNLGSARYTLRFQPANEQRSATLLLVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   V+  +   S   +  R  +  +         ++       I+        +F
Sbjct: 181 HMGEEMTQVVPMAVFESGELRALREVALALHGLVREGAQIVRGNKTQAISSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|261488456|emb|CAU94903.1| DNA gyrase subunit B [Pelomonas aquatica]
          Length = 330

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 153/313 (48%), Positives = 209/313 (66%), Gaps = 22/313 (7%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VN LS WL+L +++ G +
Sbjct: 1   DKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWLRLTVRQGGKV 59

Query: 146 YEMSFINGILDN------------PLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTL 192
           + + F  GI  N            P+ V G   +  GTEV FLP ++IF   + ++YD L
Sbjct: 60  HYIEFAKGIPQNGESVMVDGAETRPMKVIGDT-DKRGTEVHFLPDTEIFQQNNDYHYDIL 118

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLN+ V+I L+D+R+ +       Y GG++ FV ++++ K  L  +     G
Sbjct: 119 AKRLRELSFLNNGVKIRLVDERNNKE--DNFAYAGGVKGFVEFINKGKTTLHPNIFHAVG 176

Query: 253 SRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +       + +++AM+WNDG++ENVLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 177 EKQSDQGTTVGVEVAMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDN 236

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +KK K  V GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR+ VE  V+  L+ +
Sbjct: 237 ELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDY 296

Query: 368 LEEHPLEAKIIVK 380
           L E+PL+AK I  
Sbjct: 297 LLENPLDAKTICG 309


>gi|171702756|dbj|BAG16346.1| DNA gyrase subunit B [Flavobacterium sp. GMY-6]
          Length = 356

 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 157/349 (44%), Positives = 221/349 (63%), Gaps = 6/349 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
           G IYE  +  G    P+   G   +  GT V F P   IF    +++YDTL  R+REL+F
Sbjct: 1   GKIYEQEYERGKAVYPVKQVGET-DKRGTTVWFKPDGTIFQQTLEYSYDTLAARMRELAF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR      +    T   K G++ FV +LD ++ P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKREQDKDGKDVGETFHSKEGLKEFVKFLDGNRVPIIGHVISMENDKREI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +ND Y EN+  + NNI   +GGTHL G R  LTR +  Y + S   +K K  +
Sbjct: 120 PVEVALIYNDSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +AKI
Sbjct: 180 SGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEIFLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G
Sbjct: 300 TAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVG 348


>gi|171702696|dbj|BAG16316.1| DNA gyrase subunit B [Flavobacterium columnare]
          Length = 356

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 157/349 (44%), Positives = 220/349 (63%), Gaps = 6/349 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
           G IYE  +  G    P+   G   +  GT V F P   IF    +++YDTL  R+REL+F
Sbjct: 1   GKIYEQEYERGKAQYPVKQIG-TTDKRGTTVWFKPDGTIFQQTLEYSYDTLAARMRELAF 59

Query: 202 LNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR      +    T   K G++ FV +LD ++ P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKRGQDKEGKYLGETFHSKEGLKEFVKFLDGNRVPIIGHVISMENDKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +ND Y EN+  + NNI   +GGTHL G R  LTR +  Y + S    K K  +
Sbjct: 120 PVEVALIYNDSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +AKI
Sbjct: 180 SGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEIFLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G
Sbjct: 300 TAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVG 348


>gi|159576570|dbj|BAF92833.1| DNA gyrase subunit B [Halomonas subglaciescola]
          Length = 324

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 177/327 (54%), Positives = 229/327 (70%), Gaps = 3/327 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALS  L+L I R+G ++E  + +G+   PL V G     +GT+V
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELRLTIWRQGELFEQIYNHGVPKAPLGVVG-TTEKSGTQV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS +  +  +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV
Sbjct: 60  HFRPSVETSTSIEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+ +K  L           D   +++AM+W D + E++ C+TNNIPQ+DGG HL+G R
Sbjct: 118 EYLNTNKTTLNPVFHFTSAREDGTEVEVAMQWCDTFTESIFCYTNNIPQRDGGAHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ++LTR +  Y+E     KK K S  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+
Sbjct: 178 ASLTRTLNHYIETQGLLKKAKVSTAGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPGK
Sbjct: 238 TAVEQEMGRLFSDYLIEKPNEAKAIVGKMLDAARAREAARKARDMTRRKGALDIAGLPGK 297

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAK 440
           LADC E+DP  SEL+LVEGDSAGGSAK
Sbjct: 298 LADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|188090256|gb|ACD49362.1| gyrase subunit B [Xanthomonas albilineans]
          Length = 288

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           +RYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   MRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ +      +D   + 
Sbjct: 61  DDNALNVYLASSAVEGAALIPASGEPPITGAALEKLLLLFASANETVVRNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD--ILVKRI 667
             +     +      E ++  ++     + NR N  + +    +  +       +L+ R 
Sbjct: 121 ALIDLPPLDVAQLEAEGERHPSLDALQMVLNRGNLGSARYTLRFQPANEQRSATLLLVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   V+  +   S   +  R  +  +         ++       I+        +F
Sbjct: 181 HMGEEMTQVVPMAVFESGELRALREVALALHGLVREGAQIVRGNKTQAISSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|209171379|gb|ACI42885.1| GyrB [Actinobaculum schaalii]
          Length = 402

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 176/403 (43%), Positives = 250/403 (62%), Gaps = 26/403 (6%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ ++  +KR+G ++ +++ NG+     +  G    +TGT  TF  + DIF
Sbjct: 1   VGVSVVNALSTRMETIVKRDGYVWRIAYENGVP-TRELERGEETTETGTTQTFWANPDIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------SPEPREIT 222
              D++++TL+ R  +++FLN +++I+LID+R                     P  RE++
Sbjct: 60  ETTDYDFETLRKRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGESAAEVPAKREVS 119

Query: 223 MFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278
             Y GG+  +V +L+  KK        I  +       I +++AM+W   Y E+V  F N
Sbjct: 120 YCYSGGLLDYVKFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFAN 179

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GG H  G RSALT  I  Y  +    K    ++ GDD REG T+V+S+K+ +P+
Sbjct: 180 TINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDSNLSGDDVREGLTAVISVKLGNPQ 239

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++E R+ V+  +   LS WL+ HP +AK I++K   A   R AAR+AR+ 
Sbjct: 240 FEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKAREA 299

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK VL+ AS+PGKL DC+   P++ E+F+VEGDSAGGSA  GR  E+QAI+P+RGKIL
Sbjct: 300 TRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKIL 359

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           NVE+AR D+ LSS  I +LITA GTGIG D FDI+KLRYHKII
Sbjct: 360 NVEKARLDRALSSDTIQSLITAFGTGIG-DEFDIDKLRYHKII 401


>gi|262233289|gb|ACY38665.1| gyrase B [Xanthomonas sp. BC2678]
 gi|262233291|gb|ACY38666.1| gyrase B [Xanthomonas sp. BC2679]
          Length = 288

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIGLPPLYRLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL N ++     +   ++  I+   L   +      +  +      +D   + 
Sbjct: 61  DDNALNAYLANSAVEGAALIPASNEPPITGAALEKLLLLFASANDAVARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHG--SINNSDILVKRI 667
             +     +      E D   ++     + NR +    + E  +       ++ + V R 
Sbjct: 121 ALIDLPPLDVAQLEAEGDHHPSLEALQAVLNRGSLGTARYELRFEPGNEHKSATLTVIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +    L  ++  S   +  R  +  +         ++       +         +F
Sbjct: 181 HMGEELTSWLPMAAFESGELRPLRDVALALNGLVREGAQIVRGNKTQAVASFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|330858527|ref|YP_004414902.1| putative DNA topoisomerase subunit DNA-dependent ATPase [Shigella
           phage Shfl2]
 gi|327397461|gb|AEA72963.1| putative DNA topoisomerase subunit DNA-dependent ATPase [Shigella
           phage Shfl2]
          Length = 605

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 155/608 (25%), Positives = 243/608 (39%), Gaps = 70/608 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGD----------------TDGESGLHHMIYEVLDNAIDESLE 58
           I+IL  ++ +KKR  MYIG                      GL  +I E++DN++DE + 
Sbjct: 6   IKILSDIEHIKKRSGMYIGSSANEMHERFLFGKWESVQYVPGLVKLIDEIIDNSVDEGIR 65

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE---EGISAAEVIMTRLHAGGKFNQK 112
               +A+        +   TV DNGRGIP  + K    E I       T   AGG F   
Sbjct: 66  TKFKFANK-INVNIKNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDD 124

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
             +V+GG++GVG S+ N  S           N   +   NG+ +         G   GT 
Sbjct: 125 KERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWETI--PGKWKGTR 182

Query: 173 VTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           VTF+P    F          D    RL+ L+ +   +Q +   K+     +         
Sbjct: 183 VTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKVQGNFKKY------- 235

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                               I   ++N SI +  R  DG+ +  L + NNI  K+GG H+
Sbjct: 236 ------------ARQYDEHAIVQEQENCSIAVG-RSPDGFRQ--LTYVNNIHTKNGGHHI 280

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
             +   +   +   +++       K  V     +E  T V+ ++ M + RF SQTKE+L 
Sbjct: 281 DCVMDDICEDLIPQIKRK-----FKIDVTKARVKECLTIVMFVRDMKNMRFDSQTKERLT 335

Query: 349 SS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           S   E+RS ++       +  +    L  + I+  +++A++ R  A      T+      
Sbjct: 336 SPFGEIRSHIQ-----LDAKKISRAILNNEAILMPIIEAALARKLAAEKAAETKAAKKAS 390

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            A +   +          + LFL EGDSA G     R +E     PLRGK+LN     + 
Sbjct: 391 KAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYA 450

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG-AHIRTLLLTFFFRQM 525
            ML ++E+  +    G  +G+ +     L YH I IMTDAD DG   I   LL  FF   
Sbjct: 451 DMLKNKELFDICAITGLVLGEKA---ENLNYHNIAIMTDADHDGLGSIYPSLLG-FFSNW 506

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
           P L   G +  +K P+     GK  ++       E      +L +    +    G + K+
Sbjct: 507 PELFEQGRIRFVKTPVIIAQVGKKQEWFYTVAEYE--SAKDALPKHSIRYIKGLGSLEKS 564

Query: 586 DLRNFIDD 593
           + R  I +
Sbjct: 565 EYREMIQN 572


>gi|291002574|gb|ADD71492.1| DNA gyrase B [Vibrio sp. F6]
          Length = 355

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 201/356 (56%), Positives = 265/356 (74%), Gaps = 3/356 (0%)

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223
                 GT++ F PS + F                       V I L+D+R  E +    
Sbjct: 1   EKKKQPGTKIRFWPSEETFXXXXXXXXXXXXXXXXXXXXXXGVSIKLVDER-EEDKMDHF 59

Query: 224 FYKGGIEAFVSYLDRHKKPLM-QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIP 281
            Y+GGI+AFV +L+ +K P++ +        R++ I++++AM+WNDG+ EN+ CFTNNIP
Sbjct: 60  MYEGGIQAFVDHLNTNKTPIIQKKISHFDFEREDGITVEVAMQWNDGFQENIYCFTNNIP 119

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           Q+DGGTHL+G R+ALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSS
Sbjct: 120 QRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKASTSGDDAREGLTAVVSVKVPDPKFSS 179

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK+KLVSSEV+  VES +N+ L+ +L E+P EAKI+  K++DA+  R+AAR+AR++TRR
Sbjct: 180 QTKDKLVSSEVKXXVESAMNEKLAEFLIENPTEAKIVCSKIIDAARAREAARKAREMTRR 239

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE
Sbjct: 240 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 299

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           +ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLL
Sbjct: 300 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLL 355


>gi|124300763|dbj|BAF45879.1| gyrase B [Pectobacterium carotovorum subsp. carotovorum]
          Length = 334

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 195/336 (58%), Positives = 258/336 (76%), Gaps = 3/336 (0%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
            R+G ++E ++ +G+   PL VTG   N TGT V F PS + F+   +F Y+ L  RLRE
Sbjct: 1   HRDGKLHEQTYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I LID+R  + +     Y GGI+AFV YL+R+K P+  +       +D+I 
Sbjct: 60  LSFLNSGVSIRLIDER-EKDKADHYHYDGGIKAFVDYLNRNKTPIHPNVFYFSTVKDDIG 118

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 119 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMDKEGYSKKAKVSAT 178

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L  +L E+P +AKI+
Sbjct: 179 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLVDYLMENPSDAKIV 238

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AAR+ARD+TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGS
Sbjct: 239 VGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGS 298

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 299 AKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 334


>gi|117675831|emb|CAL69186.1| DNA gyrase subunit B [Leifsonia poae]
          Length = 359

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 156/360 (43%), Positives = 230/360 (63%), Gaps = 12/360 (3%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R+GN+Y  S+ +G+   PL   G A ++TGT +TF PS + F   +F+YDTL+ R ++++
Sbjct: 1   RQGNVYRQSYRHGVPQAPLE-MGEASDETGTIITFWPSPETFESVEFDYDTLRTRFQQMA 59

Query: 201 FLNSSVQISLIDKRSP-------EPREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQ 251
           FLN  ++I+L D+R         EPR     Y+ G+  +V YL+  KK     +  I  +
Sbjct: 60  FLNKGLRIALTDERPQPDEDDDAEPRSDVFLYEQGLTDYVHYLNSAKKAEVVNEEIISFE 119

Query: 252 GS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                  I++++AM+W  GY+E+V  + N I   +GGTH  G R+ALT  +  Y  +   
Sbjct: 120 SEDTERKIALEVAMQWTTGYNESVFTYANTINTHEGGTHEEGFRAALTTLVNRYAREKGI 179

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E ++ V+  V D L  W +
Sbjct: 180 LKEKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQKVVGDRLGDWFD 239

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P +AK I++K L A+  R AAR+AR+  RRKG+L+   +PGKL DC  +DP  SE+F+
Sbjct: 240 RNPNQAKDIIRKALQAATARLAARKARETARRKGLLEGGGMPGKLKDCQSKDPSISEIFI 299

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L++ E+  +ITA G GIG+D 
Sbjct: 300 VEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALANNEVQAMITAFGAGIGEDF 359


>gi|315282115|ref|ZP_07870596.1| DNA topoisomerase 4 subunit B [Listeria marthii FSL S4-120]
 gi|313614244|gb|EFR87907.1| DNA topoisomerase 4 subunit B [Listeria marthii FSL S4-120]
          Length = 134

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 3/136 (2%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y+ DSIQ+L+GL+AV+KRP+MYIG TD   GLHH++YE++DN++DE+L G+   I
Sbjct: 1   MNRNDYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123
            VTL+ D S +VSD GRG+P  +H + G    EVI+T LHAGGKF Q+  YK SGGLHGV
Sbjct: 60  VVTLHEDNSVSVSDEGRGMPVGMH-KTGKPTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118

Query: 124 GVSVVNALSSWLKLRI 139
           G SVVNALS WL + I
Sbjct: 119 GSSVVNALSEWLIVTI 134


>gi|218139449|gb|ACK57883.1| GyrB [Actinobaculum schaalii]
          Length = 403

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 173/404 (42%), Positives = 249/404 (61%), Gaps = 26/404 (6%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+ ++  +KR+G ++ +++ NG+     +  G    +TGT  TF  + DI
Sbjct: 1   GVGVSVVNALSTRMETIVKRDGYVWRIAYENGVP-TRELERGEETTETGTTQTFWANPDI 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------SPEPREI 221
           F   D++++TL+ R  +++FLN +++I+LID+R                     P  RE+
Sbjct: 60  FETTDYDFETLRKRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGETAAEVPARREV 119

Query: 222 TMFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFT 277
           +  Y GG+  +V +    +  + +    I  +       I +++AM+W   Y E+V  F 
Sbjct: 120 SYCYSGGLLDYVKFLNSMKKSEIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFA 179

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GG H  G RSALT  I  Y  +    K    ++ GDD REG T+V+S+K+ +P
Sbjct: 180 NTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTAVISVKLGNP 239

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL ++E R+ V+  +   LS WL+ HP +AK I++K   A   R AAR+AR+
Sbjct: 240 QFEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKARE 299

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
            TRRK VL+ AS+PGKL DC+   P++ E+F+VEGDSAGGSA  GR  E+QAI+P+RGKI
Sbjct: 300 ATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKI 359

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LNVE+AR D+ LSS  I +LITA GTGIG D FDI+KLR HKII
Sbjct: 360 LNVEKARLDRALSSDTIQSLITAFGTGIG-DEFDIDKLRSHKII 402


>gi|164456647|dbj|BAF97816.1| gyrase B subunit [Vibrio chagasii]
          Length = 278

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 148/280 (52%), Positives = 199/280 (71%), Gaps = 3/280 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G   +PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQSPLAVIGDT-DQTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS + FS   F+YD L  RLRELSFLNS V I LID+R  E +     ++GGI+
Sbjct: 60  TEIRFWPSEETFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVDHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           SEV+S VE  + + LS +L E+P EAK +  K++DA+  R
Sbjct: 239 SEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARAR 278


>gi|193788041|dbj|BAG50521.1| DNA gyrase subunit B [bacterium GM2311]
          Length = 346

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 194/349 (55%), Positives = 263/349 (75%), Gaps = 3/349 (0%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F    F++D L  R+REL
Sbjct: 1   RRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSETFKNIHFSWDILAKRIREL 59

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + Q         D I +
Sbjct: 60  SFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGV 117

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+E+   +KK K +  G
Sbjct: 118 EIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTG 177

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK++V
Sbjct: 178 DDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVV 237

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSA
Sbjct: 238 GKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSA 297

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           KQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG++
Sbjct: 298 KQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRE 346


>gi|261362388|gb|ACX71595.1| DNA gyrase subunit B [Pseudomonas fuscovaginae]
          Length = 344

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 187/346 (54%), Positives = 255/346 (73%), Gaps = 3/346 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  S++ F    F++D 
Sbjct: 1   SEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASAETFKNIHFSWDI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  R+RELSFLNS V I L D+R+ +       Y+GG+ AFV YL+ +K  + Q      
Sbjct: 60  LAKRIRELSFLNSGVGILLRDERTGKE--EVFRYEGGLRAFVEYLNTNKTTVNQVFHFNI 117

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+E+   +K
Sbjct: 118 QREDGIGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAK 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+  VE  +    S +L E+
Sbjct: 178 KHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKGAVEQEMGKYFSDFLLEN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVE
Sbjct: 238 PNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           GDSAGGSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 GDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTL 343


>gi|165968988|gb|ABY76050.1| topoisomerase IV subunit ParE [Parachlamydia acanthamoebae]
          Length = 477

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 145/504 (28%), Positives = 231/504 (45%), Gaps = 38/504 (7%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           +++ G K+N   ++ S GL+GVG   VNALSS   +R  REG   E  F  G L      
Sbjct: 6   QINTGAKYNDDVFQFSVGLNGVGTKAVNALSSHFLVRSHREGKSMEAVFSQGKLI--REK 63

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
           +       GT V F+P  +IF    F  + +Q RL   ++LN+ + +    +        
Sbjct: 64  SQKTSEPDGTYVEFIPDKEIFKKFRFEPEYIQKRLWHYAYLNTGLILEYNGQDI------ 117

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
             + + G+   ++      +  +  P+  +G      ++ A      Y E+   F N   
Sbjct: 118 --YSENGLLDLLNEEVT--EDRLYEPLYYRGK----LLEFAFLHTQSYGESYFSFVNGQY 169

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             DGGTHLS  R  + + +  Y +K+           G D REG    +++++ DP F S
Sbjct: 170 TSDGGTHLSAFREGILKGVNEYSKKN---------FQGVDLREGIVGTVAVRIKDPVFES 220

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           QTK KL ++E+R  +   V D +   L ++   A  I+++++           A     +
Sbjct: 221 QTKNKLGNTELRGPLVQEVKDAVVNMLYKNSSTANSIIERIVFNEK-LRKELAAVKKEAK 279

Query: 402 KGVLDIASLPGKLADCSERDP------KKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           +    I+    KL DC           +K+ +FL EGDSA  S    R    QA+  LRG
Sbjct: 280 EKQKKISFKIPKLRDCKYHAQDKADVGEKTMIFLTEGDSASASIVASRDPLTQAVFSLRG 339

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K LNV   + D++  ++E+  L++AL         DI  LRY K+I+ TDADVDG HIR 
Sbjct: 340 KPLNVHGMKIDQLYKNEEMFNLMSALNI-----EDDIENLRYQKVILATDADVDGMHIRN 394

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
           LL+TFF      L+ NG L+I++ PL+ +   +   Y   EE  +  +       E+  F
Sbjct: 395 LLITFFLTYFEGLVLNGHLFILETPLFKVRNREKTLYCYSEEERDKAIKQLKKGIEVTRF 454

Query: 576 CDSKGVISKNDLRNFIDDALKIDK 599
               G IS N+ + FI   +++  
Sbjct: 455 -KGLGEISPNEFKQFIGKDIRLIP 477



 Score = 40.8 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 2/135 (1%)

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           +  + QAV S      +   + +    K     N ++  + +    ++    +++     
Sbjct: 327 RDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNIEDDIENLRYQKVILA-TDA 385

Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729
            V    +      F        + +  +      +  +      +         D     
Sbjct: 386 DVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVRNREKTLYCYSEEER-DKAIKQ 444

Query: 730 GRKGISMQRYKGLGE 744
            +KGI + R+KGLGE
Sbjct: 445 LKKGIEVTRFKGLGE 459


>gi|164456743|dbj|BAF97864.1| gyrase B subunit [Vibrio xuii]
          Length = 278

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 149/280 (53%), Positives = 202/280 (72%), Gaps = 3/280 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLSDER-EEDKNDHFMYEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VEHLNTNKTPIHEKVFHFNSEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RSALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRSALTRTLNTFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           V+S VES + + LS +L EHP EAK +  K++DA+  R+A
Sbjct: 239 VKSAVESAMGEKLSEYLVEHPNEAKTVCSKIIDAARAREA 278


>gi|124300767|dbj|BAF45881.1| gyrase B [Escherichia coli]
          Length = 333

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 195/335 (58%), Positives = 253/335 (75%), Gaps = 4/335 (1%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLREL 199
           REG I+   + +G+   PL VTG     TGT V F PS + F+   +F YD L  RLREL
Sbjct: 2   REGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVTEFEYDILAKRLREL 60

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I +
Sbjct: 61  SFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGV 118

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  G
Sbjct: 119 EVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATG 178

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V
Sbjct: 179 DDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVV 238

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSA
Sbjct: 239 GKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSA 298

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           KQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+
Sbjct: 299 KQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 333


>gi|163256319|dbj|BAF95670.1| DNA gyrase subunit B [Bradyrhizobium sp. KO11]
          Length = 271

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 103/188 (54%), Positives = 127/188 (67%)

Query: 54  DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           DE+L G+A  + VTLN D S TV D+GRGIP  +HKEEG+SAAEVIMT+LHAGGKF+Q S
Sbjct: 1   DEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIHKEEGVSAAEVIMTQLHAGGKFDQNS 60

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEV
Sbjct: 61  YKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTEV 120

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           TFL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+    
Sbjct: 121 TFLASTETFKNVEYDFATLEHRLRELAFLNSGVHIVLSDMRHAVEKREEMHYSGGVRGIR 180

Query: 234 SYLDRHKK 241
                 ++
Sbjct: 181 QISRPQQE 188


>gi|62633145|gb|AAX89531.1| DNA gyrase subunit B [Vibrio tapetis]
          Length = 316

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 175/318 (55%), Positives = 231/318 (72%), Gaps = 3/318 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF   SYKVS GLHGVGVS VNALS  + L I R+G+ ++ ++ +G  D PL  TG  
Sbjct: 1   GGKFXDNSYKVSXGLHGVGVSXVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGATGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT + F PS + F+   F+Y+ L  RLRELSFLNS V I LID+R  E +     Y
Sbjct: 61  E-KTGTIIRFWPSEETFTNVHFHYEILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFCY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +GG +AFV YL+ +K P++Q        R++ IS+++AM+WNDGY EN+ CFTNNIPQ+D
Sbjct: 119 EGGTQAFVDYLNTNKTPIIQKVFHFDYEREDGISVEVAMQWNDGYQENIFCFTNNIPQRD 178

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK
Sbjct: 179 GGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFSSQTK 238

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG 
Sbjct: 239 DKLVSSEVKSAVESAMGEKLSEFLXENPSEAKIVCSKIIDAARARDAARKAREMTRRKGA 298

Query: 405 LDIASLPGKLADCSERDP 422
           LD+A LPGKLADC E DP
Sbjct: 299 LDLAGLPGKLADCQEXDP 316


>gi|19909733|dbj|BAB87062.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 271

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 125/270 (46%), Positives = 175/270 (64%), Gaps = 24/270 (8%)

Query: 66  VTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121
           VT++ D S ++ DNGRGIP     D   E   SAAE+ MT LHAGGKFNQ SYKVSGGLH
Sbjct: 2   VTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVSGGLH 61

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------DNPLVVTGS 164
           GVGVS VNALS WL+L ++R+G ++ + F  G +                  +P+ + G 
Sbjct: 62  GVGVSCVNALSKWLRLTVRRDGKVHLIEFAKGDVQNRIIETVNGPDGQPVEVSPMKIIGD 121

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             +  GTEV FL   +IF+  +F+Y+ L  R+RELSFLN+ V I L+D+R+ +       
Sbjct: 122 T-DKRGTEVHFLADEEIFTNVEFHYEILSKRIRELSFLNNGVHIKLVDQRTGKE--EDFA 178

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           + GG++ FV Y++R K  L  +       +D I+++++M+WNDGY+E VLCFTNNIPQ+D
Sbjct: 179 FSGGVKGFVEYINRAKTVLHPNIFYANAEKDGIAVEVSMQWNDGYNEQVLCFTNNIPQRD 238

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           GGTHL+GLR+A+TR I  Y+E++  +KK K
Sbjct: 239 GGTHLTGLRAAMTRVINKYIEENEIAKKAK 268


>gi|290796548|gb|ADD64844.1| gyrase subunit B [Xanthomonas dyei pv. laureliae]
 gi|290796550|gb|ADD64845.1| gyrase subunit B [Xanthomonas dyei pv. laureliae]
          Length = 288

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLYTGANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D    +     + NR      + +  +  +  N  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPTLDALQAVLNRGTLGTARYQLRFDPATENTAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTHVLPMGAFESGELRPLREVSLALNDLIREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|193788065|dbj|BAG50533.1| DNA gyrase subunit B [bacterium GMW-37]
          Length = 346

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 195/349 (55%), Positives = 263/349 (75%), Gaps = 3/349 (0%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F    F++D L  R+REL
Sbjct: 1   RRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKASSETFKNIHFSWDILAKRIREL 59

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ Q         D I +
Sbjct: 60  SFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGIGV 117

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319
           ++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+E    +KK K +  G
Sbjct: 118 EIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTG 177

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK++V
Sbjct: 178 DDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVV 237

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSA
Sbjct: 238 GKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSA 297

Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           KQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG++
Sbjct: 298 KQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRE 346


>gi|164456723|dbj|BAF97854.1| gyrase B subunit [Vibrio rotiferianus]
          Length = 280

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 143/282 (50%), Positives = 203/282 (71%), Gaps = 3/282 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDTE-QTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+
Sbjct: 60  TQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           SEV+S VES + + LS +L E+P EAK++  K++DA+  R+A
Sbjct: 239 SEVKSAVESAMGEKLSEFLIENPTEAKMVCTKIIDAARAREA 280


>gi|309799461|ref|ZP_07693695.1| DNA gyrase subunit B [Streptococcus infantis SK1302]
 gi|308116922|gb|EFO54364.1| DNA gyrase subunit B [Streptococcus infantis SK1302]
          Length = 393

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 163/367 (44%), Positives = 242/367 (65%), Gaps = 3/367 (0%)

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           +I++++AM++  GYHENV+ F NNI   +GGTH  G R+ALTR I  Y  K+   K ++ 
Sbjct: 3   DITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNED 62

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           ++ G+D REG T+V+S+K P+P+F  QTK KL +SEV  +     ++  S +L E+P  A
Sbjct: 63  NLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIA 122

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435
           K IV+K + A+  R AA+RAR++TR+K  L+I++LPGKLADCS  +P ++ELF+VEGDSA
Sbjct: 123 KRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSA 182

Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           GGSAK GR RE QAILP+RGKILNVE+A  DK+L+++EI +L TA+GTG G + FD++K 
Sbjct: 183 GGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAE-FDVSKA 241

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RY K++IMTDADVDGAHIRTLLLT  +R M  ++  G++YI +PP+YG+  G  ++    
Sbjct: 242 RYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEIKEYIQ 301

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
             + ++  + ++L         SK  I +      +DD    +  +   +    +  ++ 
Sbjct: 302 PGADQETRLQEAL--ARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDD 359

Query: 616 AVISGVF 622
           A  +   
Sbjct: 360 AAEADKI 366



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
           S GR   ++QRYKGLGEM+  QLWETT+NP+ R + RV + DA++AD +F  LMGD VEP
Sbjct: 318 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 377

Query: 788 RREFIQENSLPSALDI 803
           RREFI+EN++ S LD+
Sbjct: 378 RREFIEENAVYSTLDV 393


>gi|190148848|gb|ACE63399.1| DNA gyrase B subunit [Pseudonocardia halophobica]
          Length = 368

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 161/370 (43%), Positives = 227/370 (61%), Gaps = 17/370 (4%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALSS L + I   G+++   + + +    ++  G A   TGT +TF     IF    +N
Sbjct: 1   NALSSRLDVEINVGGHVWTQRYDHSVP--GVLHKGEATKRTGTSITFWADPTIFETTTYN 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEP---------------REITMFYKGGIEAFV 233
            +T+Q RL+E++FLN  + I L D+R+ E                +E T  Y GG+E FV
Sbjct: 59  LETIQRRLQEMAFLNKGLTIVLRDERNGESEEAEEPDAEGFVAKVKEQTFHYPGGLEDFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           ++L++ K P+ +  I   G      I++AM+WN GY E+V  F N I   +GGTH  G R
Sbjct: 119 AHLNKSKDPIHRKVIGYTGEGPGHQIEVAMQWNSGYSESVYTFANTINTHEGGTHEEGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALT  +  Y       K+   ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+
Sbjct: 179 SALTTTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVAEPQFEGQTKTKLGNTEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S V+   N+ LS W E +P EAKIIV K + ++  R AAR+AR+L RRK   DI  LPGK
Sbjct: 239 SFVQKISNEWLSDWFERNPAEAKIIVNKAVSSAQARLAARKARELVRRKSAGDIGGLPGK 298

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           LADC   DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI+NVE+AR D++L + E
Sbjct: 299 LADCRSTDPTKSEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTE 358

Query: 474 IGTLITALGT 483
           + ++ITALGT
Sbjct: 359 VQSIITALGT 368


>gi|239916542|gb|ACS34760.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395]
          Length = 406

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 170/409 (41%), Positives = 239/409 (58%), Gaps = 33/409 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSV  ALS+ + L IKR G+++  ++ N     PL+  G A + TGT V+F     IF 
Sbjct: 1   GVSVGTALSTKVDLEIKRNGSVWRQTYNNAEP-TPLLE-GEAASGTGTSVSFWADPKIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------------------------- 216
             ++N +T+  RL+E++FLN  + I+L D+R                             
Sbjct: 59  TTEYNIETIARRLQEMAFLNKGLTITLTDERVHEAVLEAEVEESEDGDASIKTEEQKATA 118

Query: 217 --EPREITMFYKGGIEAFVSYLDRHKKPLMQ-SPIRIQGSRDNISIDLAMRWNDGYHENV 273
             + +  T  Y  G+  ++ +L+   K  +     R     +   +++AM+WN+GY E+V
Sbjct: 119 IAKVKTRTYHYPDGLIDYIKHLNSRSKAPIPQDGRRFTAKGEGHEVEIAMQWNEGYAESV 178

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S+K
Sbjct: 179 HTFANTINTAEGGTHEEGFRAALTSTVNRYAVDKKLIKEKDGKLSGDDIREGLAAVISVK 238

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + DP+F  QTK KL ++EV+S V+   N+ L+ W + +P EAK I+KK  D+   R AAR
Sbjct: 239 VADPQFEGQTKTKLGNTEVKSFVQKTCNEHLAMWFDANPAEAKTIIKKAADSQQARLAAR 298

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           RAR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAILPL
Sbjct: 299 RARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAILPL 358

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 RGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 406


>gi|171702722|dbj|BAG16329.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-66]
          Length = 356

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 156/351 (44%), Positives = 221/351 (62%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G +YE  +  G    P+   G      GT VTF P   IF+    ++YDTL  R+RELSF
Sbjct: 1   GKVYEQEYEKGKAMYPVKQVGETT-KRGTMVTFHPDKTIFTQTIEYSYDTLAARMRELSF 59

Query: 202 LNSSVQISLIDKRSPEPREIT----MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR  +            K G++ FV +LD  ++P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKRHTKDNGDFEGEVFHSKEGLKEFVRFLDAGREPIISHVISMEHEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S    K K  +
Sbjct: 120 PVEVALVYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ L  +LEE+P +AKI
Sbjct: 180 SGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPNDAKI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK VL +  LPGKL+DCSE+DP K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVLGVGGLPGKLSDCSEQDPAKCEVYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +AKQGR R  QAI+PLRGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 300 TAKQGRDRNFQAIMPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTE 350


>gi|188090282|gb|ACD49375.1| gyrase subunit B [Xanthomonas pisi]
          Length = 288

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E DQ   +     + NR      + +  +  +  N  + ++  R 
Sbjct: 121 ALIDLPPLDVDKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPATENTAATLVAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALNDLIREGAQIVRGNKTQPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|156394525|ref|XP_001636876.1| predicted protein [Nematostella vectensis]
 gi|156223983|gb|EDO44813.1| predicted protein [Nematostella vectensis]
          Length = 516

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 181/483 (37%), Gaps = 44/483 (9%)

Query: 19  KGLDAVKKRPSMYIGDT----------DGE------------SGLHHMIYEVLDNAIDES 56
             L+ +  RP  YIG            D               GL  +  E+L NA D  
Sbjct: 45  TQLEHILLRPDTYIGSVEPNKQNMFVYDDILEAIVNREITYVPGLFKIFDEILVNAADNK 104

Query: 57  LEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
               A   I + +N +    +V ++GRGIP ++HKE  +    +I  +L     +N    
Sbjct: 105 QRDPAMSTIKIEINPEKNFISVWNDGRGIPIEMHKEHQVYVPTMIFGQLLTSSNYNDDEK 164

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGS-AGNDTGT 171
           KV+GG +G G  + N  S    +          ++  + N +      V      N   T
Sbjct: 165 KVTGGRNGYGAKLCNIFSKKFSVETACLENKKRFKQVWTNNMGKAAEPVIKEFTSNKEYT 224

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            +TF P  + F ++  + DT+    R    + +SV+   +     + +  T      +  
Sbjct: 225 CITFQPDLEKFKMETLDRDTVALLTRRAYDIAASVRGVSVILNGKKLKVKTFKDYVQLCL 284

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
             +  D+ +    +    +     N   ++ +  +D        F N+I    GGTH++ 
Sbjct: 285 KGATKDKEEDDEEEKKPTVVHEVVNNRWEVCVTVSDK-GFQQASFVNSIATTKGGTHVNY 343

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           +   +  ++ + ++K     K   ++     +      ++  + +P F SQTKE +    
Sbjct: 344 VTDQIVDKLMTVIKKKN---KGGLAIKPFQIKSHLWVFINCLIENPAFDSQTKENMTLRA 400

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRRKGVLDIASL 410
                +  ++D     ++        +++ V++    ++ A    +    +   +     
Sbjct: 401 KDFGSKCELSDKFIKAVQNSG-----VMENVMNWMRFKEKAQLNKKCSGSKHSKIRGIPK 455

Query: 411 PGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARF 465
                D   ++ +   L L EGDSA      G +  GR R    + PLRGK+LNV  A  
Sbjct: 456 LDDANDAGGKNSRHCTLILTEGDSAKTLAISGLSIVGRDR--YGVFPLRGKLLNVREASH 513

Query: 466 DKM 468
            ++
Sbjct: 514 KQV 516


>gi|106895918|gb|ABE96854.1| DNA gyrase subunit B [Aeromonas sp. MDC67]
          Length = 323

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 181/325 (55%), Positives = 237/325 (72%), Gaps = 2/325 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRL 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R          Y+GGI+AFV YL+++K P+          +D 
Sbjct: 61  RELSFLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 119 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AK
Sbjct: 179 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 239 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 298

Query: 437 GSAKQGRSRENQAILPLRGKILNVE 461
           GSAKQGR+R+NQAILPL+GKILNVE
Sbjct: 299 GSAKQGRNRKNQAILPLKGKILNVE 323


>gi|58465054|gb|AAW78425.1| DNA topoisomerase II beta subunit [Shewanella canadensis]
          Length = 337

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 189/338 (55%), Positives = 253/338 (74%), Gaps = 4/338 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           V ALS  L++ I+R+G +YE  + +G+ D P+   G A  +TGTE+ F PS D FS   F
Sbjct: 1   VYALSHSLQMTIRRDGKLYEQFYTHGVPDEPIKEIGDAT-NTGTEIRFWPSEDTFSDTLF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++D L  R+RELSFLNS V + L+D+R  + R     Y GGI AFV YL+ +K P+ +  
Sbjct: 60  HFDILAKRVRELSFLNSGVGVRLVDER--DNRNEFFKYDGGISAFVDYLNVNKTPVNKDV 117

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK
Sbjct: 118 FHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEK 177

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  
Sbjct: 178 EGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEQLGD 237

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L EHP EAK+IV K++DAS  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE
Sbjct: 238 YLIEHPNEAKLIVGKIIDASRAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPAHSE 297

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 298 IYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 335


>gi|164456679|dbj|BAF97832.1| gyrase B subunit [Vibrio hepatarius]
          Length = 279

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 147/280 (52%), Positives = 204/280 (72%), Gaps = 3/280 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DKTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L D+R  E +     ++GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLKDER-EEDKSDHFMFEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VDHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           V+S VES + + LS +L E+P EAK++  K++DA+  R+A
Sbjct: 239 VKSAVESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREA 278


>gi|189427110|ref|YP_001950209.1| type IIA topoisomerase [Ralstonia phage RSL1]
 gi|189233422|dbj|BAG41779.1| type IIA topoisomerase [Ralstonia phage RSL1]
          Length = 882

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 139/531 (26%), Positives = 231/531 (43%), Gaps = 32/531 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q   YD+ SI+  +    V+  P+MYIG  D   GL  +  E+LDN  DE +   
Sbjct: 1   MTTKKQTK-YDSTSIETQRFPHNVRASPAMYIGGVDA-YGLWTVTKELLDNGADEFMAQR 58

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHK----------EEGISAAEVIMTRLHAGGKFN 110
            D + +  + DGS  V D+G GIP  +             + +   + +   LH  GK+ 
Sbjct: 59  NDAVFLHFDADGSYWVWDHGHGIPQGVKTFKLNLNGKVVTQKMPTMQAVFGELHTSGKYR 118

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT- 169
            ++Y VS G HGVG    NA + +  +    EG    + F  G L  P+    +    T 
Sbjct: 119 SEAYAVSIGSHGVGSKGTNATAEYFDVWTLYEGRWSSIKFKKGELAQPVKECSAPKLPTG 178

Query: 170 -----GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
                GT + F P + IFSV+ F           +S++N  + I L  K+  +       
Sbjct: 179 KPLKKGTLIHFKPDASIFSVKSFPPSMAVEWATVMSYMNPGLSIHLSSKKGAKT----YL 234

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            K G + ++ +     K   +  + +     +  + LA    DG    +   TN++    
Sbjct: 235 SKKGPQEYIEHRLAALKTEGERQMFVHHDDLSDVV-LAFTNYDGCD--IRGMTNSVTNGQ 291

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG----DDCREGFTSVLSIKMPDPRFS 340
           GG H+  +  A+   +  +++     +  K  V+      D +EG   +++ K+   +FS
Sbjct: 292 GGKHVDSVTGAVYAGLKPWIKTKKVKEDGKVKVVPAFRETDLKEGLVGLVNAKLHKAQFS 351

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
           SQ K +L  + +    E  +     A+ +E+   A+ +  +    + ++     ++    
Sbjct: 352 SQDKARLTDNRLGKDYEEAITKKFVAFFKENKALAQRLCDRATKLNELKTKFTMSKKAAA 411

Query: 401 RKGVLDIASLPGKLADCSERDP-KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
               +    LP K A  +        ELFLVEGDSAGGS K  R    QA+LPL+GK+LN
Sbjct: 412 TLNAVKRNGLPAKYAAFNSDTKVHDRELFLVEGDSAGGSLKDARLP-YQAVLPLKGKVLN 470

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
             +    K L S EI  ++ A+G    + +  ++KL   KII + D D DG
Sbjct: 471 ALKDNKGKALESDEIINILAAIGYDT-KAADPLSKLTVGKIICLADPDPDG 520


>gi|207107900|dbj|BAG71962.1| DNA gyrase subunit B [Gordonia hirsuta]
          Length = 408

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 171/411 (41%), Positives = 242/411 (58%), Gaps = 35/411 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SVVNALS+ ++L IKR+G+I+   + +     PL+  G       T V F P   IF 
Sbjct: 1   GISVVNALSTKVQLEIKRDGHIWTQEYTDATP-GPLIKVGETTGTG-TTVRFWPDPTIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLID------------------------------- 212
             +FN +T+  RL+E++FLN  + ++L D                               
Sbjct: 59  TTEFNAETVARRLQEMAFLNKGLTMTLTDDRISVEDAVVEATMDVDGPEQAETIKSEEEK 118

Query: 213 -KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
            ++    R  T  Y  G+  ++ +L+R K P+ Q+ +          +++AM+WN GY E
Sbjct: 119 AEQVVTVRTRTYHYPDGLVDYIKHLNRTKTPIHQTVVGFDVKGTGHEVEIAMQWNSGYSE 178

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S
Sbjct: 179 SVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLVKEKDGKLSGDDIREGLAAVIS 238

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ DP+F  QTK KL ++EV+S V+   N+ L  W E +P EAKIIV+K +D++  R A
Sbjct: 239 VKVADPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFEANPAEAKIIVRKAVDSAQARLA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           ARRAR+L RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR   +QAIL
Sbjct: 299 ARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMHQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           P+RGKI+NVE+AR D++L + E+ ++ITA GTGI  D FD+ KLRYHKI++
Sbjct: 359 PIRGKIINVEKARIDRVLKNVEVQSIITAFGTGI-HDEFDLAKLRYHKIVL 408


>gi|297272911|ref|XP_002808175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
           [Macaca mulatta]
          Length = 1481

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 141/763 (18%), Positives = 270/763 (35%), Gaps = 99/763 (12%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 1   MQVNKIKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 60

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 61  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 120

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           E +    +I  +L     ++    KV+   H         LS  L      +        
Sbjct: 121 EKMYVPALIFGQLLTSSNYDDDEKKVTXIFH---------LSYSLLPXTWMD-------- 163

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQ 207
            N      +        +  T +TF P    F +Q  + D    +  R  +++     V+
Sbjct: 164 -NMGRAGEME-LKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVK 221

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           + L   +             G  ++V    + K     +P+++   + N   ++ +  ++
Sbjct: 222 VFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNPLKVIHEQVNHRWEVCLTMSE 272

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +    
Sbjct: 273 KGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMW 328

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F SQTKE +            +++             + I+  V   + 
Sbjct: 329 IFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQ 387

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
                   +    +   +          D   R+     L L EGDSA      G    G
Sbjct: 388 ---VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTDCTLILTEGDSAKTLAVSGLGVVG 444

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL---RYHK 499
           R +    + PLRGK+LNV  A   +++ + EI  +I  +G    ++  D + L   RY K
Sbjct: 445 RDK--YGVFPLRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGK 502

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           I+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++ K           
Sbjct: 503 IMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEF 562

Query: 560 EDYLINQSLSEEIELFCDSK-GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
           E++  +    ++ ++      G  +  + + +  D  +     K   P       + A I
Sbjct: 563 EEWKSSTPNYKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDAAI 616

Query: 619 SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           S  F+ +   +    L        NF+ ++ ++   G   +   L  +    +     + 
Sbjct: 617 SLAFSKKQIDDRKEWLT-------NFMEDRRQRKLLGLPEDY--LYGQTTTYLTYNDFIN 667

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKIT 717
              I    S  +R   + ++        ++       DK ++ 
Sbjct: 668 KELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 710


>gi|210062242|gb|ACJ06170.1| GyrB [Aeromonas media]
          Length = 332

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 183/328 (55%), Positives = 240/328 (73%), Gaps = 3/328 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYE 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+       
Sbjct: 60  ILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
              +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   S
Sbjct: 118 TTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYS 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E
Sbjct: 178 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 297

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKIL 458
           EGDSAGGSAKQGR+ +NQAILPL+GKIL
Sbjct: 298 EGDSAGGSAKQGRNPQNQAILPLKGKIL 325


>gi|290795079|gb|ADD64555.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795081|gb|ADD64556.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795083|gb|ADD64557.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795085|gb|ADD64558.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795087|gb|ADD64559.1| DNA gyrase B [Vibrio cyclitrophicus]
          Length = 278

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 149/280 (53%), Positives = 200/280 (71%), Gaps = 3/280 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI+
Sbjct: 60  TEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFEYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL
Sbjct: 119 AFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           SEV+S VES + + LS +L E+P EAKI+  K++DA+  R
Sbjct: 239 SEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARAR 278


>gi|148470209|gb|ABQ66052.1| gyrase b [uncultured bacterium]
          Length = 303

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 162/313 (51%), Positives = 204/313 (65%), Gaps = 11/313 (3%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L L I R G ++E  + +G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   + +GT V F PS    S   FN + L  RLRELSFLN+SV+I L D+R  
Sbjct: 61  YPLRVIGET-DISGTTVRFWPSGLTCSQTIFNVEILARRLRELSFLNASVRIVLRDERI- 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLC 275
              E     +GG+  FVS      K  +           + I +++A++WN        C
Sbjct: 119 -NLEHVYDCEGGLSEFVSEYINEGKTHLNEIFHFTADTENGIGVEVALQWN-------RC 170

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQKDGGTHL+G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+P
Sbjct: 171 FTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVP 230

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTKEKLVSSEV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+A
Sbjct: 231 DPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKA 290

Query: 396 RDLTRRKGVLDIA 408
           R++TRRK  LDIA
Sbjct: 291 REMTRRKSALDIA 303


>gi|110084508|gb|ABG49411.1| DNA gyrase subunit beta [Aeromonas media]
          Length = 327

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 188/330 (56%), Positives = 246/330 (74%), Gaps = 3/330 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFD 466
           GSAKQGR+R+NQAILPL+GKILNVE+ARFD
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEKARFD 327


>gi|215271422|emb|CAR48200.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271424|emb|CAR48201.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271426|emb|CAR48202.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271428|emb|CAR48203.1| gyrase B subunit [Vibrio rotiferianus]
          Length = 336

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 184/338 (54%), Positives = 255/338 (75%), Gaps = 3/338 (0%)

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
             + L I R G+I+  ++ +G    PL V G     TGT++ F PS++ F+  +F+YD L
Sbjct: 1   EKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDTE-QTGTQIRFWPSAETFTNIEFHYDIL 59

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++       
Sbjct: 60  AKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDF 118

Query: 253 SRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
            R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   SK
Sbjct: 119 EREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSK 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+
Sbjct: 179 KAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIEN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP   EL++VE
Sbjct: 239 PTEAKMVCTKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALFELYIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           GDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 336


>gi|188090288|gb|ACD49378.1| gyrase subunit B [Xanthomonas fragariae]
 gi|188090330|gb|ACD49399.1| gyrase subunit B [Xanthomonas fragariae]
 gi|188090354|gb|ACD49411.1| gyrase subunit B [Xanthomonas fragariae]
 gi|188090368|gb|ACD49418.1| gyrase subunit B [Xanthomonas fragariae]
          Length = 288

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATGEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E DQ   +     + NR      + +  +  +  N  + ++  R 
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPATENTAATLIAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL      S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGVFESGELRPLRDVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|295979471|dbj|BAJ07408.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979475|dbj|BAJ07410.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979483|dbj|BAJ07414.1| DNA gyrase subunit B [Delftia acidovorans]
          Length = 286

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 141/290 (48%), Positives = 184/290 (63%), Gaps = 32/290 (11%)

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQ 111
           L GY D I VT++ DGS +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ
Sbjct: 1   LAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKH-EPKRSAAEIALTELHAGGKFNQ 59

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN------------GILDNPL 159
            SYKVSGGLHGVGVS VNALS WLKL ++R+G +YE+ F              G+  +P+
Sbjct: 60  NSYKVSGGLHGVGVSCVNALSIWLKLSVRRDGEVYEIDFSRGQVQNRPIEIVDGVEVSPM 119

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
            V G + +  GT+V FLP ++IF+    F Y+ L  RLRELSFLN+ V+I L D+R  + 
Sbjct: 120 RVVGKS-DKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDER--DG 176

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDG 268
           RE      GG+  FV +++ +KK L  +     G+R            I +++AM+WND 
Sbjct: 177 REDDFSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVAMQWNDS 236

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V 
Sbjct: 237 YAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVS 286


>gi|295979469|dbj|BAJ07407.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979477|dbj|BAJ07411.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979479|dbj|BAJ07412.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979481|dbj|BAJ07413.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979485|dbj|BAJ07415.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979487|dbj|BAJ07416.1| DNA gyrase subunit B [Delftia acidovorans]
          Length = 286

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 141/290 (48%), Positives = 184/290 (63%), Gaps = 32/290 (11%)

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQ 111
           L GY D I VT++ DGS +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ
Sbjct: 1   LAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKH-EPKRSAAEIALTELHAGGKFNQ 59

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN------------GILDNPL 159
            SYKVSGGLHGVGVS VNALS WLKL ++R+G +YE+ F              G+  +P+
Sbjct: 60  NSYKVSGGLHGVGVSCVNALSIWLKLNVRRDGEVYEIDFSRGHVQNRPIEIVDGVEVSPM 119

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
            V G + +  GT+V FLP ++IF+    F Y+ L  RLRELSFLN+ V+I L D+R  + 
Sbjct: 120 RVVGKS-DKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDER--DG 176

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDG 268
           RE      GG+  FV +++ +KK L  +     G+R            I +++AM+WND 
Sbjct: 177 REDDFSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVAMQWNDS 236

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V 
Sbjct: 237 YAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVS 286


>gi|301120494|ref|XP_002907974.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
 gi|262103005|gb|EEY61057.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
          Length = 1329

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 135/653 (20%), Positives = 245/653 (37%), Gaps = 71/653 (10%)

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS--------CTVSDNGRGIPTDLHKE 90
            L+ +  E++ NA+D  +       + V +   GS         +V ++G+GIP   HK 
Sbjct: 27  ALYKIFDEIIVNAVDNKVRDPSMRHLDVIIEP-GSKANGYRPWISVYNDGKGIPVKFHKT 85

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEM 148
           E +   E+++  L  G  F+  + +++GG HG G  + N  S    +       G  Y+ 
Sbjct: 86  EKVYVPELVLGHLLTGSNFDDTAARLTGGRHGYGAKLTNIFSKEFVVETGDTSMGLRYKQ 145

Query: 149 SFINGILD-NPLVVTGSAGND--TGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFL 202
            + N +       +T  +G D    T+V+F P  + F ++          + R+ +++  
Sbjct: 146 VWHNNMRTRGEPEITEFSGKDAKDFTKVSFSPDLEKFEMEKLTASMTRVLKKRVYDVAGC 205

Query: 203 NSSVQISLIDK------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
            S VQ++L  K           +           +  +   +       S      SR N
Sbjct: 206 LSDVQVTLNGKKLPISGFESYIKTFRYSTTNNPVSKTAKPSKDSDDAASSGSDYIYSRVN 265

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
               + +  +D     V  F N +    GG+H+  +   + R++  +V K       + S
Sbjct: 266 KRWKIGVLPSDVGFVQV-SFVNGMSALRGGSHVGYVSDQICRRVAEHVNKK----FPELS 320

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           V     +      ++ ++ +P F SQ KE + S          +++     L +  L   
Sbjct: 321 VSTAQVKPHMAIFINCQIENPTFDSQMKEFMTSRPPTFGSTCVLSER----LLKLVLSDS 376

Query: 377 IIVKKVLDASMVRD--------AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            IV++V+ ++  R         ++ RA+  +     L+ A+L G           +  L 
Sbjct: 377 GIVERVVQSARARQRAALLKKVSSTRAKSSSVNVPKLEDANLAGGA------RSSECSLI 430

Query: 429 LVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           L EGDSA      G A  GR +    + PLRGK+LNV  A   ++  + E   L T LG 
Sbjct: 431 LTEGDSAKALAVAGLAVVGRDQ--YGVFPLRGKLLNVRDATVAQLGKNAEFAHLCTILGL 488

Query: 484 GIGQDSFDIN---KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN-GFLYIIKP 539
            + +         KLRY ++I MTD D DG+HI+ LL   F    P L+   GF+     
Sbjct: 489 RMDEHYGTEEARQKLRYGRVIAMTDQDHDGSHIKGLLFNLFHTFWPELLKEGGFISEFIT 548

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK-ID 598
           P+  ++        +       +         +  + + K  I   DL++++    K + 
Sbjct: 549 PIIKVSPTSKRVGTERGLETRRFF-------SLPEYFEWKASIDSADLKHYVIKYYKGLG 601

Query: 599 KLIKDFYPNHDKTFIEQAVISGV-----FNCESDQEINVSLASKLANRLNFIA 646
                    +        V          +           A + A  LN  +
Sbjct: 602 TSTSAEGREYFSDLDNHLVDFHWSGDNDGDALDMVFSKARAADRKAWLLNEYS 654


>gi|210062244|gb|ACJ06171.1| GyrB [Aeromonas allosaccharophila]
          Length = 330

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 183/327 (55%), Positives = 240/327 (73%), Gaps = 3/327 (0%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ 
Sbjct: 1   SDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+        
Sbjct: 60  LAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFT 117

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
             +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SK
Sbjct: 118 TEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+
Sbjct: 178 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VE
Sbjct: 238 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKIL 458
           GDSAGGSAKQGR+R+NQAILPL+GKIL
Sbjct: 298 GDSAGGSAKQGRNRKNQAILPLKGKIL 324


>gi|110224958|dbj|BAE97468.1| DNA gyrase subunit B [Streptococcus criceti]
          Length = 300

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 128/300 (42%), Positives = 191/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++++ + G I+   +  G++   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTSLEVKVHKNGKIHFQEYKRGLVVADLKVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR  + +     Y+GGI
Sbjct: 60  TSVHFTPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISITDKREGKEQSQVYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V YL+ +K+ L   PI   G  D IS+++AM++   YHENVL F NNI   +GGTH 
Sbjct: 120 VSYVDYLNENKEVLFDQPIYTDGEMDGISVEVAMQYTGTYHENVLSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  ++   K+   ++ G+D REG T+++S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARQNKLLKEKDDNLSGEDVREGLTAIISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSRFLLENPQIAKKIVEKGVLASKARIAAKRAREVTRKKSGLEISN 299


>gi|171702706|dbj|BAG16321.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-1]
          Length = 356

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 155/351 (44%), Positives = 224/351 (63%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
           G +YE  +  G    P+   G   +  GT VTF P + IF+   +++YDTL  RLRELSF
Sbjct: 1   GKVYEQEYEKGKSLYPVKQIG-TTDKRGTVVTFKPDATIFTQTLEYSYDTLAARLRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR           T   K G++ F+ +LD +++P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKRHLAEDGSQPVETFHSKEGLKEFIKFLDGNREPIISHVISMENEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S   +K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +AK 
Sbjct: 180 AGDDIREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKT 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP+K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 300 TAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTE 350


>gi|290795091|gb|ADD64561.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795093|gb|ADD64562.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795095|gb|ADD64563.1| DNA gyrase B [Vibrio cyclitrophicus]
          Length = 304

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 168/305 (55%), Positives = 223/305 (73%), Gaps = 3/305 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI+
Sbjct: 60  TEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFEYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL
Sbjct: 119 AFVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG LD+A 
Sbjct: 239 SEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAG 298

Query: 410 LPGKL 414
           LPGKL
Sbjct: 299 LPGKL 303


>gi|322875028|gb|ADX20837.1| DNA gyrase subunit B [Tatlockia micdadei]
          Length = 208

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 127/209 (60%), Positives = 159/209 (76%), Gaps = 3/209 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I
Sbjct: 1   GRGIPVDIHKEEGRSAAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTI 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G ++E  + NG+ D PL +TG A N TGT+V F PS++ FS  +F+YD L  RLREL
Sbjct: 61  RRNGKVHEQHYRNGVPDAPLAMTGEA-NTTGTQVWFKPSANTFSNIEFHYDILAKRLREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V+I L D+R+ +  + T  Y+GGI+AFV +L+R+K P+M     + G RDNIS+
Sbjct: 120 SFLNSGVRIHLYDERTQK--QDTFCYEGGIKAFVEHLNRNKTPIMPVVFSLSGERDNISV 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +L+M+WND + E + CFTNNIPQ+DGGTH
Sbjct: 178 ELSMQWNDSFQETIFCFTNNIPQRDGGTH 206


>gi|324962660|gb|ADY62432.1| gyrase subunit B [Frankia sp. NRRLB-16306]
          Length = 408

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 154/407 (37%), Positives = 212/407 (52%), Gaps = 56/407 (13%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ +SY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGQSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + ++ +G+ +   ++      PL  T      TGT ++F     IF    
Sbjct: 61  VVNALSTRLDVAVETDGHSWFQPYVASRPAAPLAKT-GTSKKTGTTISFWADPTIFETTT 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSP------------------------------ 216
           + Y+TL  RL+E++FLN  + I+L D+RS                               
Sbjct: 120 YKYETLYRRLQEMAFLNKGLSITLRDERSAAAKNPALAAKAAEAAEAAAAAGEAEASAPE 179

Query: 217 ------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
                             EP E+T  Y  G+  FV +L+  K  + +S I ++     I 
Sbjct: 180 TGSVETSSAQTAAAEEVTEPVEVTFKYDNGLVDFVGHLNATKDAVHRSVISLESKGTGIE 239

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK---- 314
            +LAM WN GY+E+V  F N I   +GGTH  G R+ALT  + +Y +     K  K    
Sbjct: 240 AELAMEWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPVKAGSK 299

Query: 315 ---RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
                + GDD REG T+++S+K+  P+F  QTK KL ++E +  V+      L  W E +
Sbjct: 300 NTDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEMCYAALKDWFEVN 359

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
             EA+ IV K LDA   R AAR+ARDLTRRKG+L    LPGKL+DC 
Sbjct: 360 RTEARAIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLSDCQ 406


>gi|86438844|emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 121/697 (17%), Positives = 232/697 (33%), Gaps = 118/697 (16%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDN 51
            +  Q    L+ +  RP  YIG  +  +                    GL+ +  E+L N
Sbjct: 33  EEMYQKKSQLEHILLRPDTYIGSIEKHTSNLWVYQNGEMVNRSITYVPGLYKIFDEILVN 92

Query: 52  AIDE-----SLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           A D      S+    D + VT++++  S +V +NG G+P ++H+EE +   E+I   L  
Sbjct: 93  AADNKQRDPSM----DSVKVTIDVEQNSISVYNNGAGVPVEIHQEERVYVPELIFGHLLT 148

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG---NIYEMSFINGILDNPLVVT 162
              ++    K +GG +G G  + N  S+   +    +G     Y+  F N + +  + V 
Sbjct: 149 SSNYDDTVKKTTGGRNGYGAKLTNIFSTEFIIETA-DGMRQKKYKQVFTNNMGNKTVPVI 207

Query: 163 GSAGN-DTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEP 218
                 +  T VT+ P    F++     D    +Q R+ +L+         +  + +   
Sbjct: 208 TKCKESENWTRVTYKPDLSKFNMTHLEDDVVALMQKRVIDLAGCLGKT---VKVELNGTR 264

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
             +          +V    +       +P+     + N   ++ +  +DG  + V  F N
Sbjct: 265 VPV-----KSFLDYVDLYLQSAGKSRDAPLLRLTEKVNDRWEICVSLSDGQFQQV-SFVN 318

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I    GGTH++ +   +T  + + V K    K    ++   + +      ++  + +P 
Sbjct: 319 GIATIKGGTHVNYVTDQITNHVMNIVNK----KNKNANLKAHNVKNYLWVFVNALIDNPA 374

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI-IVKKVLDASMVRDAARRARD 397
           F SQTK      E  ++  +                AK  IV  +L  +  +      + 
Sbjct: 375 FDSQTK------ETLTIRPNSFGSKCELTPAFLNKVAKSGIVDSLLSWANFKQNKDLKKT 428

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLR 454
              +   +   +          ++ +K  L L EGDSA   A  G +   R++  + PLR
Sbjct: 429 DGTKTERVHNINKLEDANYAGGKNSEKCTLILTEGDSAKALAMAGLAVVGRDHYGVFPLR 488

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK+LNV  A   +                                       D DG+HI+
Sbjct: 489 GKLLNVREASATQ---------------------------------------DHDGSHIK 509

Query: 515 TLLLTFFFRQMPSLIHNGFLYI-IKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEI 572
            LL+ F     PSL+      +    P+     +  +          E +          
Sbjct: 510 GLLINFIHSFWPSLLKIPSFLVEFITPIVKATHKNGNTLAFYSMPEYEAW---------- 559

Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632
                 K  +  N     I     +         ++ +  ++        +    + I +
Sbjct: 560 ------KESLRGNASGWSIKYYKGLGTSTSKEGRDYFQNLVQHKKDFIWIDERDGEAIEL 613

Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR 669
           + + K          + E   H       I       
Sbjct: 614 AFSKKKIEERKNWLRQFEPGVHLDQKEKLIKYSDFVH 650


>gi|53854901|gb|AAU95770.1| topoisomerase II [Paramecium bursaria Chlorella virus Marburg 1]
          Length = 1058

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 148/698 (21%), Positives = 265/698 (37%), Gaps = 75/698 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE--------------------SGLHHMIYEVLDN 51
           A     L   + V  RP  Y+G  + E                         +  E+L N
Sbjct: 2   ASKYIKLSQREHVLARPDTYVGSVEKELRNDFVYDGAKITKKDVLYSPAFLKIFDEILVN 61

Query: 52  AIDESLEGYA-DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           + D    G A   + VT++ D S ++ ++G  I  + + +EGI   E+I   L +G  F+
Sbjct: 62  SADCFNRGGAMTTLKVTISKD-SISIFNDGCSISLEKN-DEGIYIPEMIFGHLLSGENFD 119

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI-LDNPLVVTGSAGNDT 169
               +   G +G G  + N  S    + I    + Y  S+ + +   +   +T S+   +
Sbjct: 120 DTEERTGAGRNGYGSKLTNIFSKIFSVEIYDGSHKYVQSWSDNMISVSKAKITKSSKAPS 179

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T   F+P    F + D + DT   L  R+ +++ +  SV++ L                
Sbjct: 180 ITTS-FVPDLARFGMTDIDDDTRSILVRRVYDMAAVLGSVRVFL---------------- 222

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G    V     + K      +  + +       + +   + +    + F N    + GG
Sbjct: 223 DGKRLEVKTPLDYFKLYTDEKVVFESAD---GWSIGVAPANEFA--CVSFVNASAAR-GG 276

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH+  + +++ + +     K       K  V     +      ++ K+ +P FSSQTK+ 
Sbjct: 277 THVDAVVNSIAKAVVEAASK------KKTIVKPTMVKNKLFVFVNAKIVNPTFSSQTKDI 330

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L S  ++    +      +  + +  +    + + ++DA +++      +        L 
Sbjct: 331 LTSRNIKFSPSAAFLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLT 390

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERA 463
            A+  G       ++     L L EGDSA   A  G +   RE   I PLRGK+LNV  A
Sbjct: 391 DAAWAG------TKNSGLCTLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDA 444

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               + ++ EI  +   LG  +G+   D + LRY  +++MTDADVDG+HI  L++ FF  
Sbjct: 445 SVSSIAANAEIAAIKQILGLQVGKTYKDASSLRYGSVMLMTDADVDGSHISALVMNFFHA 504

Query: 524 QMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGV 581
           Q PSL+   GFL     P+   +RGK ++        E +  N    ++    +    G 
Sbjct: 505 QFPSLLAVPGFLKKFSTPIVVASRGKDIKEFYSLPDYESWKQNTADCAKWSIKYFKGLGT 564

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
            +  D + +  +       +K        T     +I   FN     E   +        
Sbjct: 565 STSEDAKKYFKN-------LKSLVKIFGWTEDSGELIDRSFNKSRPDER-KTWLLDFQPG 616

Query: 642 LNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                 K+       I+   IL  R         V++G
Sbjct: 617 NQLDQSKTNIPVPDFIDKELILFSRYDVERSIPSVVDG 654


>gi|164456687|dbj|BAF97836.1| gyrase B subunit [Vibrio lentus]
          Length = 280

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 153/282 (54%), Positives = 202/282 (71%), Gaps = 3/282 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI+
Sbjct: 60  TEIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL
Sbjct: 119 AFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           SEV+S VES + + LS +L E+P EAKI+  K++DA+  RDA
Sbjct: 239 SEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDA 280


>gi|110224974|dbj|BAE97476.1| DNA gyrase subunit B [Streptococcus downei]
          Length = 300

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 128/300 (42%), Positives = 193/300 (64%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++++ + G I+   +  G++   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTSLEVKVHKNGKIHFQEYKRGLVVADLKVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR  + +     Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISISDKREGKEQSQVYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V YL+ +K+ L ++PI   G  D IS+++AM++   YHENVL F NNI   +GGTH 
Sbjct: 120 VSYVDYLNENKEVLFENPIYTDGEMDGISVEVAMQYTGTYHENVLSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  ++   K+   ++ G+D REG T+++S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARQNKLLKEKDDNLSGEDVREGLTAIISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|110224972|dbj|BAE97475.1| DNA gyrase subunit B [Streptococcus gallolyticus]
          Length = 300

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 189/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R G IY   +  G + + L V G   +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVSVHRNGKIYYQEYRRGHVVSDLAVIGDT-DRHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEKHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +++ +K+ + ++PI   G  D IS+++AM++   YHE V+ F NNI   +GGTH 
Sbjct: 120 SSYVEFINENKEVIFENPIYTDGELDGISVEVAMQYTTSYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  ++   K+   ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|218139447|gb|ACK57881.1| GyrB [Actinobaculum schaalii]
          Length = 402

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 174/403 (43%), Positives = 248/403 (61%), Gaps = 26/403 (6%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ ++  +KR+G ++ +++ NG+     +  G    +TGT  TF  + DIF
Sbjct: 1   VGVSVVNALSTRMETIVKRDGYVWRIAYENGVP-TRELERGEETTETGTTQTFWANPDIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------------PEPREIT 222
              D++++TL+ R  +++FLN +++I+LID+R                     P  RE++
Sbjct: 60  ETTDYDFETLRKRFHQMAFLNKNLRINLIDERCSATSEGDEVTGAEGESAAEVPAKREVS 119

Query: 223 MFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278
             Y GG+  +V +L+  KK        I  +       I +++AM+W   Y E+V  F N
Sbjct: 120 YCYSGGLLDYVKFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFAN 179

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GG H  G RSALT  I  Y  +    K    ++ GDD REG T+V+S+K+ +P+
Sbjct: 180 TINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTAVISVKLGNPQ 239

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++E R+ V+  +   LS WL+ HP +AK I++K   A   R AAR+AR+ 
Sbjct: 240 FEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKAREA 299

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK VL+ AS+PGKL DC+   P++ E+F+VEGDSAGGSA  GR  E+QAI+P+RGKIL
Sbjct: 300 TRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKIL 359

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           NVE+AR D+ LSS  I +LITA GTGIG D FDI+K  YHKII
Sbjct: 360 NVEKARLDRALSSDTIQSLITAFGTGIG-DEFDIDKXXYHKII 401


>gi|188090408|gb|ACD49438.1| gyrase subunit B [Xanthomonas arboricola]
          Length = 288

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRI 667
             +     + +  Q              + NR      + +  +  + +  ++ ++  R 
Sbjct: 121 ALIDLPPLDVDKLQAEGEAHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|188090232|gb|ACD49350.1| gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|188090298|gb|ACD49383.1| gyrase subunit B [Xanthomonas arboricola pv. celebensis]
 gi|188090412|gb|ACD49440.1| gyrase subunit B [Xanthomonas arboricola]
 gi|290796566|gb|ADD64853.1| gyrase subunit B [Xanthomonas arboricola]
          Length = 288

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRI 667
             +     + +  Q              + NR      + +  +  + +  ++ ++  R 
Sbjct: 121 ALIDLPPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|295979473|dbj|BAJ07409.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979489|dbj|BAJ07417.1| DNA gyrase subunit B [Delftia acidovorans]
          Length = 285

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 140/286 (48%), Positives = 183/286 (63%), Gaps = 32/286 (11%)

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQ 111
           L GY D I VT++ DGS +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ
Sbjct: 1   LAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKH-EPKRSAAEIALTELHAGGKFNQ 59

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN------------GILDNPL 159
            SYKVSGGLHGVGVS VNALS WLKL ++R+G +YE+ F              G+  +P+
Sbjct: 60  NSYKVSGGLHGVGVSCVNALSIWLKLSVRRDGEVYEIDFSRGQVQNRPIEIVDGVEVSPM 119

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
            V G + +  GT+V FLP ++IF+    F Y+ L  RLRELSFLN+ V+I L D+R  + 
Sbjct: 120 RVVGKS-DKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDER--DG 176

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDG 268
           RE      GG+  FV +++ +KK L  +     G+R            I +++AM+WND 
Sbjct: 177 REDDFSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVAMQWNDS 236

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K
Sbjct: 237 YAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAK 282


>gi|171702728|dbj|BAG16332.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-80]
          Length = 356

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 154/351 (43%), Positives = 222/351 (63%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
           G +Y+  +  G    P+   G      GT VTF P + IF+   +++YDTL  RLRELSF
Sbjct: 1   GKVYQQEYEKGKSLYPVKQIG-TTYKRGTIVTFKPDATIFTHTLEYSYDTLAARLRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR           T   K G++ F+ +LD +++P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKRHLADDGSQPVETFHSKEGLKEFIKFLDGNREPIISHVISMENEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S   +K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +AK 
Sbjct: 180 AGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKT 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP+K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 300 IAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIYTALGVTVGTE 350


>gi|164456721|dbj|BAF97853.1| gyrase B subunit [Vibrio ponticus]
          Length = 276

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 146/278 (52%), Positives = 200/278 (71%), Gaps = 3/278 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DKTGTM 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS   F+  +F+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AF
Sbjct: 60  IRFWPSDQTFTNVEFHYDILAKRLRELSFLNSGVSIKLADER-EEDKHDHFMYEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V++L+ +K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VNHLNTNKTPIHEKVFHFNSEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           V+S VES + + LS +L EHP EAK++  K++DA+  R
Sbjct: 239 VKSAVESTMGEKLSEFLAEHPSEAKMVCSKIIDAARAR 276


>gi|110224980|dbj|BAE97479.1| DNA gyrase subunit B [Streptococcus hyointestinalis]
          Length = 300

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 193/300 (64%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G+I+   +  G +   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGHIHFQEYRRGQVVADLAVIGET-DRTG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P S IF     +++D L  R++EL+FLN  ++IS+ DKR  + +  +  Y+GGI
Sbjct: 60  TTVHFTPDSAIFTETTTYDFDKLAKRVQELAFLNRGLRISITDKREGKEQTKSFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++VS+++ +K+ + + PI   G  D I++++AM++   YHE ++ F NNI   +GGTH 
Sbjct: 120 ASYVSFINENKELIFKDPIYTDGEMDGITVEVAMQYTTSYHETIMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKLLKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|327343587|dbj|BAK09538.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343589|dbj|BAK09539.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343591|dbj|BAK09540.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343593|dbj|BAK09541.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343595|dbj|BAK09542.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343597|dbj|BAK09543.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343599|dbj|BAK09544.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343601|dbj|BAK09545.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343603|dbj|BAK09546.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
          Length = 321

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 154/324 (47%), Positives = 224/324 (69%), Gaps = 4/324 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF++ SYKVSGGLHGVG+SVVNALS  L+L IKR+G IY   +  G+    L + G   
Sbjct: 1   GKFDELSYKVSGGLHGVGISVVNALSQKLELIIKRQGKIYRQLYNTGVPQTTLEIIGET- 59

Query: 167 NDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           N TGT + F P+  IF    +F YD L  R+REL+FLN  + IS+  + +      +   
Sbjct: 60  NQTGTYIRFWPNPLIFQKNIEFKYDILVKRIRELAFLNPGLSISI--QDNRINIHHSFQE 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI+AFV++L ++K P+  +       +D IS+++A+ W + +  ++ CFTNNIPQ+DG
Sbjct: 118 DGGIKAFVAFLSKNKIPIHPNIFYFAAEKDKISVEIALHWTNTFQNHIYCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHLSG RSA+TR I +Y+++   +KK K ++IGDD REG  +++SIK  +P+FSSQTK+
Sbjct: 178 GTHLSGFRSAITRTINTYIDREGYNKKSKVNIIGDDTREGIVAIVSIKAHNPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSE++S VE+ +N+ L  +L EHP +AK IV K++ A+  R+AAR+ R++ R+KG L
Sbjct: 238 KLVSSEIKSAVETLMNEYLIQYLLEHPQDAKSIVGKIISAARTREAARKVREIIRKKGTL 297

Query: 406 DIASLPGKLADCSERDPKKSELFL 429
           D++ L GKLADC E++P  +EL+L
Sbjct: 298 DLSILSGKLADCQEKNPILNELYL 321


>gi|155370647|ref|YP_001426181.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella
           virus FR483]
 gi|155123967|gb|ABT15834.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella
           virus FR483]
          Length = 1058

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 147/698 (21%), Positives = 263/698 (37%), Gaps = 75/698 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE--------------------SGLHHMIYEVLDN 51
           A     L   + V  RP  Y+G  + E                         +  E+L N
Sbjct: 2   ASKYIKLSQREHVLARPDTYVGAVEKELRNDFVYDGAKITKKDVLYSPAFLKIFDEILVN 61

Query: 52  AIDESLEGYA-DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           + D    G A   + V ++ D   +V ++G  IP + + +EG+   E+I   L +G  F+
Sbjct: 62  SADCFNRGGAMTTLKVAISKD-CISVYNDGCSIPLEKN-DEGVYIPEMIFGHLLSGENFD 119

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI-LDNPLVVTGSAGNDT 169
               +   G +G G  + N  S    + I    + Y  S+ + +   +   +T S+   +
Sbjct: 120 DTEERTGAGRNGYGSKLTNIFSKIFSVEIYDGSHKYVQSWSDNMISVSKAKITKSSKAPS 179

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T   F+P    F + D + DT   L  R+ +++ +  SV++ L                
Sbjct: 180 ITTS-FVPDLARFGMTDIDDDTRSILVRRVYDMAAVLGSVRVFL---------------- 222

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G    V     + K      +  + +       + +   + +    + F N    + GG
Sbjct: 223 DGKRLEVKTPLDYFKLYTDEKVVFESAD---GWSIGVAPANEFA--CVSFVNASAAR-GG 276

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH+  + +++ + +     K       K  V     +      ++ K+ +P FSSQTK+ 
Sbjct: 277 THVDAVVNSIAKAVVEAASK------KKTIVKPAMVKNKLFVFVNAKVVNPTFSSQTKDI 330

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L S  ++    +      +  + +  +    + + ++DA +++      +        L 
Sbjct: 331 LTSRNIKFSPSAAFLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLT 390

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERA 463
            A+  G       ++     L L EGDSA   A  G +   RE   I PLRGK+LNV  A
Sbjct: 391 DAAWAG------TKNSGLCTLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDA 444

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
               + ++ EI  +   LG  +G+   D + LRY  +++MTDADVDG+HI  L++ FF  
Sbjct: 445 SVSSIAANAEIAAIKQILGLQVGKTYKDASSLRYGSVMLMTDADVDGSHISALVMNFFHA 504

Query: 524 QMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGV 581
           Q PSL+   GFL     P+   +RGK +         E +  N    ++    +    G 
Sbjct: 505 QFPSLLAVPGFLKKFSTPIVVASRGKDINEFYSLPDYESWKQNTADCAKWSIKYFKGLGT 564

Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641
            +  D + +  +       +K        T     +I   FN     E   +        
Sbjct: 565 STSEDAKKYFKN-------LKSLVKIFGWTEDSGELIDRSFNKSRPDER-KTWLLDFQPG 616

Query: 642 LNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
                 K+       I+   IL  R         V++G
Sbjct: 617 NQLDQSKTNIPVPDFIDKELILFSRYDVERSIPSVVDG 654


>gi|116069854|gb|ABI13056.2| DNA gyrase subunit B [Pseudomonas sp. CF600]
          Length = 304

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 159/307 (51%), Positives = 222/307 (72%), Gaps = 4/307 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  THIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G RS+LTR + +Y+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 VGFRSSLTRSLNNYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMNKFFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLAD 416
           LPGKLAD
Sbjct: 298 LPGKLAD 304


>gi|115500928|dbj|BAF34134.1| B subunit gyrase [Azotobacter nigricans subsp. nigricans]
          Length = 249

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 134/252 (53%), Positives = 183/252 (72%), Gaps = 4/252 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I+R+G ++E ++++G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQ 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL   G     TGT++ F PS++ F    F++D L  RLRELSFLNS V I L D+RS 
Sbjct: 61  APLAAVGDTE-GTGTQIHFKPSAETFHNIHFSWDILAKRLRELSFLNSGVGIVLKDERSG 119

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLC 275
           +       Y+GG++AFV YL+ +K  + Q     +Q   D + +++A++WNDG++EN+LC
Sbjct: 120 KE--ELFKYEGGLKAFVDYLNTNKNAVSQVFHFNMQREEDGVGVEVALQWNDGFNENILC 177

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+P
Sbjct: 178 FTNNIPQRDGGTHLAGFRSALTRNLNAYIEQEGLAKKHKVATTGDDAREGLTAIISVKVP 237

Query: 336 DPRFSSQTKEKL 347
           DP+FSSQTK+KL
Sbjct: 238 DPKFSSQTKDKL 249


>gi|148762463|dbj|BAF63933.1| DNA gyrase subunit B [Bacillus sp. SA-B2]
          Length = 325

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 156/328 (47%), Positives = 221/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+  I+ + F  G+    + V G   + TGT  
Sbjct: 1   YKVCGGLHGVGASVVNALSTNLEVHVHRDNKIHYLQFKKGVPQGEIEVVGET-DITGTIT 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IF+    +N+DTL  RLREL+FLN  + IS+ DKR+ +   I   Y+GGI ++
Sbjct: 60  HFNPDPEIFNETTTYNFDTLSQRLRELAFLNKGINISIEDKRT-DSEPINYHYEGGISSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y++R K+ L   P   +G    IS+++A+++NDG+  N+  F NNI   +GG H SG 
Sbjct: 119 VEYINRTKEILH-EPFYAEGEEQGISVEVAIQYNDGFTSNLYSFANNIHTYEGGMHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K++  ++ GDD REG T+V+S+K PDP+F  QTK KL +SEV
Sbjct: 178 KTGLTRVINDYARKNNLFKENDPNLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V +S  ++  S +L E+P  AKI+V+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDSVFSETFSKFLFENPNVAKIVVEKGLMASRARAAAKKARELTRRKSALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|110224968|dbj|BAE97473.1| DNA gyrase subunit B [Streptococcus equinus]
          Length = 300

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 128/300 (42%), Positives = 189/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+   +  G + + L V G   +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGDT-DRHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI
Sbjct: 60  TTVHFTPDGEIFTETIVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEQHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +++ +K  +  +PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 SSYVQFINENKDVIFDTPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  ++   K+   ++ GDD REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARQNKILKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|188090314|gb|ACD49391.1| gyrase subunit B [Xanthomonas vasicola]
          Length = 288

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEI-----NVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     + E  Q        +     + NR      + +  +  +  N+   ++  R 
Sbjct: 121 ALIDLPPLDVEKLQAEGDHHPTLDALQAVLNRGTLGTARYQLRFDPATENAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITNFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|327343617|dbj|BAK09553.1| DNA gyrase subunit B [endosymbiont of Nysius expressus]
          Length = 321

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 155/324 (47%), Positives = 222/324 (68%), Gaps = 4/324 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF++ SYKVSGGLHGVG+SVVNALS  L+L IKR+G IY   +  G+    L + G   
Sbjct: 1   GKFDEISYKVSGGLHGVGISVVNALSQKLELIIKRQGKIYRQLYNTGVPKTTLEIIGET- 59

Query: 167 NDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           N TGT + F P+  IF     F YD L  R+REL+FLN  + IS+ D R       +   
Sbjct: 60  NKTGTYIRFWPNPLIFKKNIKFKYDILVKRIRELAFLNPGLSISIQDNRI--NIHDSFQE 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI+AFV++L ++K P+  +       +D I++++A+ W + +  N+ CFTNNIPQ DG
Sbjct: 118 DGGIKAFVAFLSKNKIPIHPNIFYFAAEKDKINVEIALHWTNTFQNNIYCFTNNIPQHDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHLSG RSA+TR I +Y+++   +KK K ++IGDD REG  ++++IK  +P+FSSQTK+
Sbjct: 178 GTHLSGFRSAITRTINTYIDREGYNKKSKVNIIGDDTREGIVAIVTIKAHNPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSE++S VE+ +N+ L  +L EHP +AK IV K++ A+  R+AAR+ R++ R+KG L
Sbjct: 238 KLVSSEIKSAVETLMNEYLIQYLLEHPQDAKSIVGKIISAARTREAARKVREINRKKGTL 297

Query: 406 DIASLPGKLADCSERDPKKSELFL 429
           D++ L GKLADC E++P  +EL+L
Sbjct: 298 DLSILSGKLADCQEKNPILNELYL 321


>gi|188090310|gb|ACD49389.1| gyrase subunit B [Xanthomonas dyei pv. dysoxyli]
 gi|188090364|gb|ACD49416.1| gyrase subunit B [Xanthomonas dyei pv. dysoxyli]
 gi|188090436|gb|ACD49452.1| gyrase subunit B [Xanthomonas dyei pv. dysoxyli]
 gi|188090438|gb|ACD49453.1| gyrase subunit B [Xanthomonas dyei pv. dysoxyli]
 gi|188090440|gb|ACD49454.1| gyrase subunit B [Xanthomonas dyei pv. dysoxyli]
 gi|188090442|gb|ACD49455.1| gyrase subunit B [Xanthomonas dyei pv. dysoxyli]
 gi|290796552|gb|ADD64846.1| gyrase subunit B [Xanthomonas dyei]
 gi|290796556|gb|ADD64848.1| gyrase subunit B [Xanthomonas dyei]
 gi|290796558|gb|ADD64849.1| gyrase subunit B [Xanthomonas dyei]
 gi|290796560|gb|ADD64850.1| gyrase subunit B [Xanthomonas dyei]
 gi|290796562|gb|ADD64851.1| gyrase subunit B [Xanthomonas dyei]
          Length = 288

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLYTGANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D    +     + NR      + +  +  +  N  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPTLDALQAVLNRGTLGTARYQLRFDPATENTAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALNDLIREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|110224952|dbj|BAE97465.1| DNA gyrase subunit B [Streptococcus bovis]
          Length = 300

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 128/300 (42%), Positives = 189/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R+G I+   +  G + + L V G   +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGET-DRHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI
Sbjct: 60  TTVHFTPDGEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEQHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +++ +K  +  +PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 SSYVQFINENKDVIFDTPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  ++   K+   ++ GDD REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARQNKILKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|37956505|gb|AAP15342.1| gyrase B [Geobacter chapelleii]
          Length = 310

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 141/300 (47%), Positives = 200/300 (66%), Gaps = 2/300 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS WL+L I+R+G ++  S+  G    PL + G      GT+VT
Sbjct: 8   QVSGGLHGVGVSVVNALSKWLELEIRRDGKVFRQSYRRGDPVAPLEMVGDTK-KRGTKVT 66

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F+P  +IF   + ++D L  RLRE++FLN+ V+I++ D       +    Y+GGI +FV 
Sbjct: 67  FMPDEEIFETTEISFDVLSQRLREMAFLNAGVRITISDAXVDNKSQE-FHYEGGINSFVE 125

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+R K  L   PI  +G +  +  ++AM++ND Y E +  F NNI   +GGTHL+G ++
Sbjct: 126 YLNRSKTALHPKPIYFKGEKGGVETEVAMQYNDSYDEKIFSFANNINTHEGGTHLAGFKA 185

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            LTR + SYV  +   KK+K S+ GDD REG T V+S+K+P P+F  QTK KL +SEV+ 
Sbjct: 186 GLTRTMNSYVAANEMLKKEKVSISGDDLREGMTCVISVKIPQPQFEGQTKTKLGNSEVKG 245

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VES +N+ L+ +LEE+P  AK I++K +DA+  R+AAR+AR+  RRKG LD+  LPGKL
Sbjct: 246 YVESLINEKLAQFLEENPQVAKRILEKSIDAARAREAARKARETVRRKGALDLGGLPGKL 305


>gi|110224976|dbj|BAE97477.1| DNA gyrase subunit B [Streptococcus gallolyticus]
          Length = 300

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 125/300 (41%), Positives = 189/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + R G I+   +  G + + L V G   +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVSVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEKHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +++ +K+ + ++PI   G  D IS+++AM++   YHE V+ F NNI   +GGTH 
Sbjct: 120 SSYVEFINENKEVIFENPIYTDGELDGISVEVAMQYTTSYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  ++   K+   ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|188090238|gb|ACD49353.1| gyrase subunit B [Xanthomonas vesicatoria ATCC 35937]
 gi|188090242|gb|ACD49355.1| gyrase subunit B [Xanthomonas vesicatoria]
 gi|188090290|gb|ACD49379.1| gyrase subunit B [Xanthomonas vesicatoria]
          Length = 288

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLYTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D    +     + NR      + +  +  +  N  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPTLDALQAVLNRGTLGTARYQLRFDPATENIAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLRDVSLALNDLIREGAQIVRGNKTHAITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|218139453|gb|ACK57884.1| GyrB [Actinobaculum schaalii]
          Length = 403

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 175/404 (43%), Positives = 249/404 (61%), Gaps = 26/404 (6%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+ ++  +KR+G ++ +++ NG+     +  G    +TGT  TF  + DI
Sbjct: 1   GVGVSVVNALSTRMETIVKRDGYVWRIAYENGVP-TRELERGEETTETGTTQTFWANPDI 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------SPEPREI 221
           F   D++++TL+ R  +++FLN +++I+LID+R                     P  RE+
Sbjct: 60  FETTDYDFETLRKRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGESAAEVPAKREV 119

Query: 222 TMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFT 277
           +  Y GG+  +V +L+  KK        I  +       I +++AM+W   Y E+V  F 
Sbjct: 120 SYCYSGGLLDYVKFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFA 179

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GG H  G RSALT  I  Y  +    K    ++ GDD REG T+V+S+K+ +P
Sbjct: 180 NTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDSNLSGDDVREGLTAVISVKLGNP 239

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL ++E R+ V+  +   LS WL+ HP +AK I++K   A   R AAR+AR+
Sbjct: 240 QFEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKARE 299

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
            TRRK VL+ AS+PGKL DC+   P++ E+F+VEGDSAGGSA  GR  E+QAI+P+RGKI
Sbjct: 300 ATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKI 359

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           LNVE+AR D+ LSS  I +LITA GTGIG D FDI+KL  HKII
Sbjct: 360 LNVEKARLDRALSSDTIQSLITAFGTGIG-DEFDIDKLXXHKII 402


>gi|164456649|dbj|BAF97817.1| gyrase B subunit [Vibrio cholerae]
          Length = 271

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 143/272 (52%), Positives = 194/272 (71%), Gaps = 3/272 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F PS+  F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI
Sbjct: 60  GTTVRFWPSAQTFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV++L+R+K P+ +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR + +Y++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           SSEV+S VES +N+ L+ +L E+P EAK +  
Sbjct: 239 SSEVKSAVESAMNEKLADFLAENPSEAKNVCS 270


>gi|290796568|gb|ADD64854.1| gyrase subunit B [Xanthomonas arboricola]
          Length = 288

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           +RYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   VRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRI 667
             +     + +  Q              + NR      + +  +  + +  ++ ++  R 
Sbjct: 121 ALIDLPPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|171702702|dbj|BAG16319.1| DNA gyrase subunit B [Flavobacterium sp. GMA3-59]
 gi|171702704|dbj|BAG16320.1| DNA gyrase subunit B [Flavobacterium sp. GMA3-60]
          Length = 356

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 155/351 (44%), Positives = 224/351 (63%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
           G +YE  +  G    P+   G   +  GT VTF P + IF+   +++YDTL  RLRELSF
Sbjct: 1   GKVYEQEYEKGKSLYPVKQIG-TTDKRGTIVTFKPDATIFTQTLEYSYDTLAARLRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR           T   K G++ F+ +LD +++P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKRHLADDGSQPVETFHSKEGLKEFIKFLDGNREPIISHVISMENEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S   +K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +AK 
Sbjct: 180 AGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKT 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP+K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 300 TAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTE 350


>gi|188090300|gb|ACD49384.1| gyrase subunit B [Xanthomonas albilineans]
          Length = 287

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 140/287 (48%), Gaps = 7/287 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           +RYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   MRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ +      +D   + 
Sbjct: 61  DDNALNVYLASSAVEGAALIPATGEPPITGAALEKLLLLFASANETVARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +    +              + NR N  + +    +  +     + +L+ R 
Sbjct: 121 ALIDLPPLDVNQLEAEGELHPSLDALQTVLNRGNLGSARYTLRFQPANEQRPATLLLVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   V+  +   S   +  R  +  +         ++       I+        +F
Sbjct: 181 HMGEEMTQVVPMAVFESGELRPLREVALALHGLVREGAQIVRGNKTQAISSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD
Sbjct: 241 EEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAAD 287


>gi|171702720|dbj|BAG16328.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-56]
          Length = 356

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 155/351 (44%), Positives = 224/351 (63%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
           G +YE  +  G    P+   G   +  GT VTF P + IF+   +++YDTL  RLRELSF
Sbjct: 1   GKVYEQEYEKGKSLYPVKQIG-TTDKRGTVVTFKPDATIFTQTLEYSYDTLAARLRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR           T   K G++ F+ +LD +++P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKRHLAEDGSQPVETFHSKEGLKEFIKFLDGNREPIISHVISMENEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S   +K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +AK 
Sbjct: 180 AGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKT 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP+K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 300 TAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTE 350


>gi|171702708|dbj|BAG16322.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-2]
 gi|171702718|dbj|BAG16327.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-55]
 gi|171702724|dbj|BAG16330.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-73]
 gi|171702732|dbj|BAG16334.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-83]
          Length = 356

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 155/351 (44%), Positives = 224/351 (63%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
           G +YE  +  G    P+   G   +  GT VTF P + IF+   +++YDTL  RLRELSF
Sbjct: 1   GKVYEQEYEKGKSLYPVKQIG-TTDKRGTIVTFKPDATIFTQTLEYSYDTLAARLRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR           T   K G++ F+ +LD +++P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKRHLAEDGSQPVETFHSKEGLKEFIKFLDGNREPIISHVISMENEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S   +K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +AK 
Sbjct: 180 AGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKT 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP+K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 300 TAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTE 350


>gi|164456681|dbj|BAF97833.1| gyrase B subunit [Vibrio hispanicus]
          Length = 276

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 147/278 (52%), Positives = 202/278 (72%), Gaps = 3/278 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I+R G ++  ++ +G+   PL V G   + +
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIRRGGQVHTQTYRHGVPQGPLSVIGET-DKS 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT V F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI
Sbjct: 60  GTTVRFWPSDETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKNDHFMYEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV++L+R+K P+ +        RD+ IS+++AM+WNDG+ E + CFTNNIPQ+DGGTH
Sbjct: 119 QAFVTHLNRNKTPIHEKVFHFNSERDDGISVEVAMQWNDGFQEGIFCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + ++++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNTFMDKEGYSKKAKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           SSEV+S VES + + L+ +L EHP EAKI+  K++DA+
Sbjct: 239 SSEVKSAVESAMGEKLNEFLAEHPTEAKIVCNKIIDAA 276


>gi|110225020|dbj|BAE97499.1| DNA gyrase subunit B [Streptococcus sobrinus]
          Length = 300

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 127/300 (42%), Positives = 191/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L++++ + G I+   +  G++   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTSLEVKVHKNGKIHFQEYKRGMVAADLKVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR  + +     Y+GGI
Sbjct: 60  TSVHFTPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISITDKREGKEQNQVYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V YL+ +K+ L + PI   G  D IS+++AM++   YHENVL F NNI   +GGTH 
Sbjct: 120 VSYVDYLNENKEVLFERPIYTDGEMDGISVEVAMQYTGTYHENVLSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  ++   K+   ++ G+D REG T+++S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARQNKLLKEKDDNLSGEDVREGLTAIISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++    +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFFRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|261362392|gb|ACX71597.1| DNA gyrase subunit B [Pseudomonas japonica]
          Length = 338

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 185/340 (54%), Positives = 254/340 (74%), Gaps = 3/340 (0%)

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            ++R G I+E  +++G+   P+ + G +   TGT++ F PS++ F    F++D L  R+R
Sbjct: 1   TVRRSGKIWEQVYVHGVPQAPMKIVGESE-TTGTQIHFKPSAETFKNIHFSWDILAKRIR 59

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           ELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + Q         D +
Sbjct: 60  ELSFLNSGVGIMLKDERSGKD--EHFCYEGGLRAFVEYLNTNKTAVNQVFHFSVQRDDGV 117

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+E+   +KK+K + 
Sbjct: 118 GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKNKVAT 177

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK 
Sbjct: 178 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKA 237

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGG
Sbjct: 238 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 297

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTL
Sbjct: 298 SAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTL 337


>gi|188090396|gb|ACD49432.1| gyrase subunit B [Xanthomonas melonis]
 gi|188090398|gb|ACD49433.1| gyrase subunit B [Xanthomonas melonis]
          Length = 288

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G +YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVDGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVDKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|188090394|gb|ACD49431.1| gyrase subunit B [Xanthomonas melonis]
          Length = 288

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G +YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVDGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|209863371|gb|ACI88785.1| DNA gyrase subunit B [Aeromonas sp. JH87]
          Length = 335

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 203/338 (60%), Positives = 256/338 (75%), Gaps = 3/338 (0%)

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L D
Sbjct: 1   GEPQAPLKQIGYST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLQD 59

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           +R  + RE    Y+GGI+AFV YL+++K P+          RD I +++AM+WND Y E 
Sbjct: 60  ER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTERDGIGVEVAMQWNDAYQEG 117

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+
Sbjct: 118 VYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISV 177

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AA
Sbjct: 178 KVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAA 237

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 238 RKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILP 297

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           L+GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D +
Sbjct: 298 LKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEY 335


>gi|171702710|dbj|BAG16323.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-3]
          Length = 356

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 156/351 (44%), Positives = 225/351 (64%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
           G +YE  +  G    P+   G   +  GT VTF P + IF+   +++YDTL  RLRELSF
Sbjct: 1   GKVYEQEYEKGKSLYPVKQIG-TTDKRGTIVTFKPDATIFTQTLEYSYDTLAARLRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR           T   K G++ F+ +LD +++P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKRHLADDGSQPVETFHSKEGLKEFIKFLDGNREPIISHVISMENEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S   +K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +AKI
Sbjct: 180 AGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP+K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 300 TAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTE 350


>gi|290796554|gb|ADD64847.1| gyrase subunit B [Xanthomonas dyei]
          Length = 288

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           +RYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   VRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLYTGANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D    +     + NR      + +  +  +  N  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPTLDALQAVLNRGTLGTARYQLRFDPATENTAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALNDLIREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|171702760|dbj|BAG16348.1| DNA gyrase subunit B [Flavobacterium sp. GMY-14]
 gi|171702762|dbj|BAG16349.1| DNA gyrase subunit B [Flavobacterium sp. GMY-15]
          Length = 356

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 150/352 (42%), Positives = 218/352 (61%), Gaps = 6/352 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G +YE  +  G    P+   G      GT VTF P   IF+    ++YDTL  R+RELSF
Sbjct: 1   GKVYEQEYERGKALYPVKQIGDTT-KRGTIVTFYPDPTIFTQTTEYSYDTLSARMRELSF 59

Query: 202 LNSSVQISLIDKRSPEPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I
Sbjct: 60  LNKGITITFTDKREVDKDGNFLGEVFHSTEGLKEYIRYLDGNREPIIGHVISMDHEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G RS LTR +  Y + S    K K  +
Sbjct: 120 PVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +A+I
Sbjct: 180 TGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPNDARI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I++KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP + E++LVEGDSAGG
Sbjct: 240 IIQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G + 
Sbjct: 300 TAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTED 351


>gi|269970288|gb|ACZ55129.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. akhurstii]
          Length = 308

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 166/311 (53%), Positives = 224/311 (72%), Gaps = 4/311 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G   +PL V G     TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGEPQSPLKVVGETE-QTGTRVRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS D F +  +F +D L  RLRELSFLNS V I LIDKR+         Y+GGI+AFV 
Sbjct: 60  WPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L+++K P+  +       +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 FLNKNKTPIHPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           A+TR + SY++K   +KK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 AMTRTLNSYMDKEGYNKKSKVSATGDDAREGLGAVISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE+ +N+ L  +L E+P +AK +V K++D +  R+AAR+AR++TRRKG LD+A LPGKL
Sbjct: 238 AVETLMNEKLVEYLLENPNDAKTVVSKIIDPARAREAARKAREMTRRKGALDLAGLPGKL 297

Query: 415 ADCSERDPKKS 425
           ADC ERDP  S
Sbjct: 298 ADCQERDPALS 308


>gi|74188146|dbj|BAE37168.1| unnamed protein product [Mus musculus]
          Length = 511

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 92/488 (18%), Positives = 179/488 (36%), Gaps = 52/488 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 43  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 102

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 103 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 162

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 163 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 222

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 223 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 273

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 274 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 332

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 333 RHVDYVVDQVVSKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 389

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 390 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 445

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 446 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 503

Query: 462 RARFDKML 469
            A   +++
Sbjct: 504 EASHKQIM 511


>gi|148762425|dbj|BAF63914.1| DNA gyrase subunit B [Virgibacillus salarius]
 gi|148762457|dbj|BAF63930.1| DNA gyrase subunit B [Virgibacillus sp. Sa3-1I]
          Length = 325

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 155/328 (47%), Positives = 221/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L++ + R+  I+ + F  G+    + V G   + TGT  
Sbjct: 1   YKVFGGLHGVGASVVNALSTNLEVHVHRDNKIHYLQFKKGVPQGEIEVVGET-DITGTIT 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P  +IF+    +N+DTL  RLREL+FLN  + IS+ DKR+ +   I   Y+GGI ++
Sbjct: 60  HFNPDPEIFNETTTYNFDTLSQRLRELAFLNKGINISIEDKRT-DSEPINYHYEGGISSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y++R K+ L   P   +G    IS+++A+++NDG+  N+  F NNI   +GG H SG 
Sbjct: 119 VEYINRTKEILH-EPFYAEGEEQGISVEVAIQYNDGFTSNLYSFANNIHTYEGGMHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K++  ++ GDD REG T+++S+K PDP+F  QTK KL +SEV
Sbjct: 178 KTGLTRVINDYARKNNLFKENDPNLSGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V +S  ++  S +L E+P  AKI+V+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDSVFSETFSKFLFENPNVAKIVVEKGLMASRARAAAKKARELTRRKSALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|188090422|gb|ACD49445.1| gyrase subunit B [Xanthomonas axonopodis pv. aurantifolii]
          Length = 288

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGSQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|188090262|gb|ACD49365.1| gyrase subunit B [Xanthomonas axonopodis pv. malvacearum]
 gi|188090340|gb|ACD49404.1| gyrase subunit B [Xanthomonas axonopodis pv. malvacearum]
 gi|188090402|gb|ACD49435.1| gyrase subunit B [Xanthomonas axonopodis pv. malvacearum]
          Length = 288

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHRTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|27447212|gb|AAL99217.1| kinetoplast and nucleus-associated type II DNA topoisomerase [Bodo
           saltans]
          Length = 1247

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 126/601 (20%), Positives = 215/601 (35%), Gaps = 62/601 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT----------------------DGESGLHHMIYEVL 49
           A   + L  +D V  RP MY+G                        D   GL  +  E++
Sbjct: 2   AHKYKKLSPIDHVLLRPEMYVGSVESQPIQLFLLDDQHSKVEWTTADLNHGLLKIFDEIV 61

Query: 50  DNAIDESLEGYADI------ITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
            NA D     +         I VT++   G  TV ++G GIP    K+  +   E+I   
Sbjct: 62  LNAADNI---HNSKRNPMTFINVTIDETTGQITVENDGAGIPLVKSKDHKLLIPEMIFGH 118

Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI-LDNPLVV 161
           L     ++     +S G HG G  + N +S    +  +       + + + +   +   V
Sbjct: 119 LLTSSNYDNDPDSMSAGRHGYGAKLTNIMSQEFIVYCRTADKEVTIRWTDHMRSIDDYQV 178

Query: 162 TGSAGNDTGTEVTFLPSSDIF---SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
             +      T++TF P   +F    +    Y  L  R+ +L+    SV +S         
Sbjct: 179 QPTNEAGNLTKITFTPDFSVFGVTKLTKDMYRILHKRILDLAAAFPSVTVSFNGTALDVG 238

Query: 219 REITMFYKGGIEAFVSYLDRHK--------KPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
              +        A +                P  +          ++ +    +      
Sbjct: 239 SFASYVKLFEAPASLFSAPTAPVVADGDAAPPPAELNKPFLFEVKHLRLAFIPQPQASVS 298

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
                  N +    GGTH+   +  LT  + + V +                   FT+V+
Sbjct: 299 RRTFAVVNGVVTYSGGTHVQAAQQILTDAVDALVAQKKKEGIIVTVNTFLRY---FTTVV 355

Query: 331 SIKMPDPRFSSQTKEKLVS--SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            ++   P+F SQ+K +LVS     R      V    +        + ++ V      ++ 
Sbjct: 356 FLETTQPKFDSQSKVRLVSKVKFPRFPTGQLVEHLATMTFLSDASKGQMDVLNKELNAL- 414

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSR 445
              + + R +      L  A+  G          +   L + EGDSA   A        R
Sbjct: 415 IQVSGKRRPMISTLTKLVDAASAGG------SGSEIRTLIVTEGDSAKALALNSLSNEQR 468

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505
           +   + PLRGK+LNV      ++   +E+  L  ALG  IG+       LRY ++++MTD
Sbjct: 469 KYFGVFPLRGKLLNVRNNNLARLKKCKELCDLFAALGIEIGRRYTSTESLRYQRLLVMTD 528

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHN--GFLYIIKPPLYGI-TRGKSLQYVKDEESLEDY 562
            D DG HI+ LL++ F    PSL+ +  GF+ I   PL    TRG  +    + +    +
Sbjct: 529 QDADGTHIKGLLISAFESLWPSLLQHSLGFISIFSTPLIRATTRGGDVHSFYNVQEFVAW 588

Query: 563 L 563
            
Sbjct: 589 K 589


>gi|89143178|emb|CAJ57486.1| DNA gyrase subunit B [Microbacterium dextranolyticum]
          Length = 377

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 153/378 (40%), Positives = 229/378 (60%), Gaps = 20/378 (5%)

Query: 131 LSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           LS+ L + ++R+G+++   + +G     PL     A ++TGT +TF P S IF   +F+Y
Sbjct: 1   LSTRLDVEVRRQGHVWRQEYRDGGAPQAPLSQ-DEATDETGTTITFWPDSTIFETVEFDY 59

Query: 190 DTLQHRLRELSFLNSSVQISLID--------------KRSPEPREITMFYKGGIEAFVSY 235
           DTL+ R ++ +FLN  ++I+L D              +   +       Y+ G+  +V Y
Sbjct: 60  DTLRTRFQQTAFLNKGLRITLSDLRPASAYVIDTEDGQSVEKQPFDDFHYERGLVDYVEY 119

Query: 236 LDRHKKPLMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           L++ +K  + +   I+        +IS++LAM+W   Y ENV  F N I   +GGTH  G
Sbjct: 120 LNKIRKAEVVNDEIIEVESEDTERHISLELAMQWTTSYTENVFTFANTINTHEGGTHEEG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALT  I  Y   +   K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL ++E
Sbjct: 180 FRAALTTLINKYARANNLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNTE 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            ++ V+  V D L+ WL+ +P +AK ++ K +DA+  R AAR+AR+  RRK V +  S+P
Sbjct: 240 AKAFVQKIVGDQLTDWLDRNPAQAKRVITKAIDAATARLAARKARETARRKSVFESFSMP 299

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
            KL DC+ +DP  SE+FLVEGDSAGGSA  GR  E QAIL LRGKILNVE+AR D+ L +
Sbjct: 300 EKLKDCTSKDPSISEIFLVEGDSAGGSAVSGRDPERQAILSLRGKILNVEKARLDRALGN 359

Query: 472 QEIGTLITALGTGIGQDS 489
            EI  +I+A GTGIG+D 
Sbjct: 360 AEIQAMISAFGTGIGEDF 377


>gi|188090240|gb|ACD49354.1| gyrase subunit B [Xanthomonas perforans]
 gi|188090292|gb|ACD49380.1| gyrase subunit B [Xanthomonas axonopodis]
 gi|188090302|gb|ACD49385.1| gyrase subunit B [Xanthomonas perforans]
 gi|188090312|gb|ACD49390.1| gyrase subunit B [Xanthomonas axonopodis pv. ricini]
 gi|188090324|gb|ACD49396.1| gyrase subunit B [Xanthomonas axonopodis pv. alfalfae]
 gi|188090332|gb|ACD49400.1| gyrase subunit B [Xanthomonas axonopodis pv. alfalfae]
 gi|188090376|gb|ACD49422.1| gyrase subunit B [Xanthomonas axonopodis pv. ricini]
 gi|188090382|gb|ACD49425.1| gyrase subunit B [Xanthomonas perforans]
 gi|188090414|gb|ACD49441.1| gyrase subunit B [Xanthomonas alfalfae subsp. citrumelonis]
 gi|188090416|gb|ACD49442.1| gyrase subunit B [Xanthomonas alfalfae subsp. citrumelonis]
 gi|188090418|gb|ACD49443.1| gyrase subunit B [Xanthomonas alfalfae subsp. citrumelonis]
 gi|188090448|gb|ACD49458.1| gyrase subunit B [Xanthomonas perforans]
          Length = 288

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E DQ   +     + NR      + +  +     N+   ++  R 
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSENAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|4514471|dbj|BAA75434.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 212/306 (69%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L I R G+I++  + +G    PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVIGDIE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    ++GG+ 
Sbjct: 60  TTVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVA--LEHIFDFEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINQGKTHLNEIFHFTTQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|295979511|dbj|BAJ07428.1| DNA gyrase subunit B [Comamonas testosteroni]
          Length = 283

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 136/286 (47%), Positives = 176/286 (61%), Gaps = 32/286 (11%)

Query: 57  LEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQ 111
           L GY D I VT++ DGS +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ
Sbjct: 1   LAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKH-EPKRSAAEIALTELHAGGKFNQ 59

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPL 159
            SYKVSGGLHGVGVS VNALS WLKL + R+G  +E+ F  G +             +P+
Sbjct: 60  NSYKVSGGLHGVGVSCVNALSIWLKLTVSRDGVRHEIDFSRGFVQNRLIEVVDGTEVSPM 119

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
            V G + +  GT+V FLP  +IF     F Y+ L  RLRELSFLN+ V+I L D+R  + 
Sbjct: 120 RVVGPS-DKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDERDGKE 178

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDG 268
                   GG++ FV +++  KK L  +    +G+R            I +++AM+WND 
Sbjct: 179 --DDFSGAGGVKGFVEFINGTKKVLHPTTFYAEGTRPAETYGGIPGTEIGVEVAMQWNDS 236

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K
Sbjct: 237 YAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNELAKKAK 282


>gi|188090346|gb|ACD49407.1| gyrase subunit B [Xanthomonas translucens pv. secalis]
          Length = 288

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G+++I  PPLY + +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYIHIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL N ++     +    +  I+ + L   +      +  +      +D   + 
Sbjct: 61  DDNALNAYLANSAVEGAALIPATDEPPITGSALEKLLLLFASANDAVARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E DQ  +++    + NR +    + +  +  +     + ++  R 
Sbjct: 121 ALIDLPPLDVAQLEAEGDQHPSLTSLQAVLNRGSLGTARYQLRFEPATEQRPATLIAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL  +   S   +  R  +  +         ++       I+        +F
Sbjct: 181 HMGEELTQVLPMAVFESGELRPLREVALALNGLVRAGAQIVRGNKTQSISSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|339810|gb|AAA61210.1| topoisomerase II [Homo sapiens]
          Length = 886

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 120/649 (18%), Positives = 238/649 (36%), Gaps = 54/649 (8%)

Query: 88  HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY- 146
           HK E +    +I  +L     ++    KV+GG +G G  + N  S+   +    +   + 
Sbjct: 3   HKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHS 62

Query: 147 -EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFL 202
            + +++N ++            +  T +TF P    F ++  + D    +  R  +L+  
Sbjct: 63  FKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGS 122

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
              V++    K+             G  ++V    + K       +++     N   D+ 
Sbjct: 123 CRGVKVMFNGKK---------LPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVC 173

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           +  ++   + +  F N+I    GG H+  +   +  ++   V+K   +     SV     
Sbjct: 174 LTLSEKGFQQI-SFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQV 229

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           +      ++  + +P F SQTKE + + + +S                +    + I+  V
Sbjct: 230 KNHIWVFINCLIENPTFDSQTKENM-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWV 288

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GG 437
              +         +  + +   +          D   +   +  L L EGDSA      G
Sbjct: 289 KFKAQ---TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSG 345

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK--- 494
               GR R    + PLRGKILNV  A   +++ + EI  +I  +G    +   D      
Sbjct: 346 LGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKT 403

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRY KI+IMTD D DG+HI+ LL+ F     PSL+ +GFL     P+   ++ K      
Sbjct: 404 LRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFY 463

Query: 555 DEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
                +++  +    +     +    G  +  + + +  D  +   L +   P       
Sbjct: 464 SIPEFDEWKKHIENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPE------ 517

Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQE 673
           + A I+  F+ +   +    L        NF+ ++ ++  HG      +           
Sbjct: 518 DDAAITLAFSKKKIDDRKEWLT-------NFMEDRRQRRLHGLPEQF-LYGTATKHLTYN 569

Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTI-----LSLICNGDKIKIT 717
            F+ +   +FS     + I S  + + +         +     DK ++ 
Sbjct: 570 DFINKELILFSNSDNERSIPS--LVDGFKPGQRKVLFTCFKRNDKREVK 616


>gi|188090384|gb|ACD49426.1| gyrase subunit B [Xanthomonas axonopodis pv. aurantifolii]
          Length = 288

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEI-----NVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     + E  Q        +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAKGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|301110016|ref|XP_002904088.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096214|gb|EEY54266.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 1505

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 113/595 (18%), Positives = 203/595 (34%), Gaps = 83/595 (13%)

Query: 15  IQILKGLDAVKKRPSMYIGDT----------DGES------------GLHHMIYEVLDNA 52
            Q    L+ +  RP  Y+G            D E             GL+ +  E++ NA
Sbjct: 102 YQKKTQLEHILLRPDTYVGSIEHVEQSMWVFDDEKQRMVLKKINYVPGLYKIFDEIIVNA 161

Query: 53  IDESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
            D        + + VT++++    +V +NG+GIP  LHKE  +   E+I   L  G  F+
Sbjct: 162 CDNKQRDKSMNTLKVTIDVEKNEISVWNNGKGIPIVLHKEHKVYVPELIFGHLLTGSNFD 221

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGSAGND 168
            K  K +GG +G G  + N  S+   +          Y+  F + +              
Sbjct: 222 DKKKKTTGGRNGYGAKLANIFSNEFVVETADSSTKQKYKQVFESNMSKKNPPSITKWAQK 281

Query: 169 TGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLID--KRSPEPREITM 223
             T ++F P  + F +   N D     + R+ +++ ++       ++  K   +     +
Sbjct: 282 DFTCISFKPDLERFKLDFLNDDIVSLFKKRVYDVAGVSGKGMNVFLNGDKIPIKSFPQYV 341

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG------------YHE 271
               G   + +  D+  +             D                         + +
Sbjct: 342 ALYPGPRGYEADKDKDDEDAHPDENGDDDDEDYSEDKAKKAKAARAKPSNVTKNGVIFEK 401

Query: 272 NVLCFTNNIPQKDGGTHLS--GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
               +   +   + G       +   +T ++ S ++K    +  K +      +      
Sbjct: 402 PDERWQVGVGMSEDGFQQHVSYIVDQITAKLVSVLKKKNKGEAVKPNY----IKNHMFVY 457

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S  + +P F SQTKE L +          ++D     LE+  L  KI+      A    
Sbjct: 458 VSALIDNPAFDSQTKETLTTRANSFGSTFNLSDKFLKQLEKSGLVEKIL---SFAAFKQT 514

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
              RR    + ++  L                 K   L L EGDSA              
Sbjct: 515 AELRRKGGSSGKRSRLTGIPKLDDANHAGTAKSKDCTLILTEGDSA-------------- 560

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
                             +L ++EI  ++  LG   GQ       LRY  ++IM D D D
Sbjct: 561 ----------------KTILKNEEIQNVVKILGLKYGQKYESTKGLRYGHLMIMADQDHD 604

Query: 510 GAHIRTLLLTFFFRQMPS-LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           G+HI+ L++       PS L+ +GFL     P+   T+G++ +        E + 
Sbjct: 605 GSHIKGLVINLIHHFWPSLLVVDGFLQEFITPIVKCTKGRTKEVFYTMPEYEAWR 659


>gi|171702714|dbj|BAG16325.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-47]
          Length = 356

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 150/352 (42%), Positives = 218/352 (61%), Gaps = 6/352 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G +YE  +  G    P+   G      GT VTF P   IF+    ++YDTL  R+RELSF
Sbjct: 1   GKVYEQEYERGKALYPVKQIGETT-KRGTIVTFYPDPTIFTQTTEYSYDTLSARMRELSF 59

Query: 202 LNSSVQISLIDKRSPEPRE----ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I
Sbjct: 60  LNKGISITFTDKREVDKDGNFLGEVFHSTEGLKEYIRYLDGNREPIIGHVISMDHEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G RS LTR +  Y + S    K K  +
Sbjct: 120 PVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +A+I
Sbjct: 180 TGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPNDARI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I++KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP + E++LVEGDSAGG
Sbjct: 240 IIQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G + 
Sbjct: 300 TAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTED 351


>gi|188090456|gb|ACD49462.1| gyrase subunit B [Xanthomonas sacchari]
          Length = 288

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 139/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +   ++  I+   L   +      ++ +      +D   + 
Sbjct: 61  DDNALNAYLASSAVEGAALVPASNEPPITGAALEKLLLLFASANEAVARNAHRYDPALLS 120

Query: 615 QAVISGVFNCESDQEINVS--LASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRI 667
             +     +    +    +      L   LN  +  S +             + + V R 
Sbjct: 121 ALIDLPPLDVAQLESEGEAHPSLDALQAVLNRGSLGSARYALSFERGSEQKPAMLKVIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +    +  ++  S   +  R  +  +         ++       I+        +F
Sbjct: 181 HMGEELTSWVPMAAFESGELRALREVALALHGLVREGAQIVRGNKTQAISSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|109289993|ref|YP_656238.1| gp39plus60 DNA topoisomerase II large subunit [Aeromonas phage 25]
 gi|104345666|gb|ABF72566.1| gp39plus60 DNA topoisomerase II large subunit [Aeromonas phage 25]
          Length = 607

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 131/613 (21%), Positives = 245/613 (39%), Gaps = 71/613 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT----------------DGESGLHHMIYEVLDNAIDE 55
           +D  ++L   + V  RP+MY+G                      GL  +I E++DN++DE
Sbjct: 2   SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKYQSVSYVPGLVKIIDEIIDNSVDE 61

Query: 56  SLE---GYADIITVTLNM-DGSCTVSDNGRGIPTDLH--KEEGISAAEVIMTRLHAGGKF 109
            +     +A+ I +  ++ +GS TV DNGRGIP  +    +  +       T+  AG  F
Sbjct: 62  GIRTDFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVNTPDGEMPKPVAAWTQTMAGSNF 121

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY-EMSFINGILDNPLVVTGSAGND 168
           +  + +VS G++GVG S+ N  S         +G  +  ++  +G            G  
Sbjct: 122 DD-TKRVSMGMNGVGSSLTNFFSKTFIGETC-DGKNFLTVTCSDGASQVNWET--KPGKI 177

Query: 169 TGTEVTFLPSSDIFS---VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            GT V F+P    F    +     D +  R+  LS +   ++ ++  + +          
Sbjct: 178 KGTSVYFIPDEKHFEGKTIDQQIVDIISDRITALSVVFPKIKFTINGEVASMKFAEYAKM 237

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            G     +   +                                    + + N +  K+G
Sbjct: 238 FGDESLILENDNFSIAICNSPEGF----------------------RQVSYVNGLNIKNG 275

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTK 344
           G+H+  L   +  ++   +++       K  +     +E  T +++++ M + RF SQTK
Sbjct: 276 GSHIDYLVDGIADELIPSIKRK-----HKIEISKARIKECLTMIVAVRGMSNLRFDSQTK 330

Query: 345 EKLVSS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRR 401
           E+L +   EV+S +E          L +  +    I+  +++A++ R  AA +A     +
Sbjct: 331 ERLTNPLGEVKSHIELDFKK-----LGKQIMNNDAILMPIIEAALARHLAAEKAALTKAQ 385

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K            A       K++ LFL EGDSA G     R  E      LRGK++N  
Sbjct: 386 KAAAKTKVAKHIKAGSWGDISKETTLFLTEGDSAIGYLLSVRDSELHGGYALRGKVMNTW 445

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA-HIRTLLLTF 520
             +   +L ++E+  +   +G  +  +  D+   +Y  + IMTDAD DG   I   LL F
Sbjct: 446 GMKGSDVLKNRELADICAIMGLDL-ANPDDVENRKYKNVAIMTDADPDGQGSIYPCLLAF 504

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F R  P L   G +  +K P+  +++GK  ++       +     +        +    G
Sbjct: 505 FSR-WPKLYDLGCVRFVKTPVVILSKGKQTKWFYTITEFDAQ--KEKYKGWELRYIKGLG 561

Query: 581 VISKNDLRNFIDD 593
            + +++    +++
Sbjct: 562 SLREHEYSEVVNN 574


>gi|188090348|gb|ACD49408.1| gyrase subunit B [Xanthomonas translucens]
 gi|188090350|gb|ACD49409.1| gyrase subunit B [Xanthomonas translucens pv. undulosa]
          Length = 288

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL N ++     +    +  I+ + L   +      +  +      +D   + 
Sbjct: 61  DDNALNAYLANSAVEGAALIPATDEPPITGSALEKLLLLFASANDAVARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E DQ  +++    + NR +    + +  +  +     + ++  R 
Sbjct: 121 ALIDLPPLDVAQLEAEGDQHPSLTSLQAVLNRGSLGTARYQLRFEPATEQRPATLIAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL  +   S   +  R  +  +         ++       I+        +F
Sbjct: 181 HMGEELTQVLPMAVFESGELRPLREVALALNGLVRAGAQIVRGNKTQSISSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|188090228|gb|ACD49348.1| gyrase subunit B [Xanthomonas axonopodis pv. citri]
          Length = 288

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP +I  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPEVIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|146431138|gb|ABQ40552.1| DNA gyrase B subunit [Vibrio harveyi]
 gi|146431196|gb|ABQ40581.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 275

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 144/277 (51%), Positives = 201/277 (72%), Gaps = 3/277 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S VES + + LS +L E+P EAK++  K++DA+  
Sbjct: 239 VKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARA 275


>gi|171702734|dbj|BAG16335.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-85]
 gi|171702736|dbj|BAG16336.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-88]
 gi|171702738|dbj|BAG16337.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-89]
 gi|171702740|dbj|BAG16338.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-90]
 gi|171702742|dbj|BAG16339.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-92]
 gi|171702750|dbj|BAG16343.1| DNA gyrase subunit B [Flavobacterium sp. GMY-1]
 gi|171702752|dbj|BAG16344.1| DNA gyrase subunit B [Flavobacterium sp. GMY-2]
 gi|171702754|dbj|BAG16345.1| DNA gyrase subunit B [Flavobacterium sp. GMY-3]
          Length = 356

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 151/351 (43%), Positives = 219/351 (62%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G IYE  +  G    P+   G      GT VTF P   IF+    ++YDTL  R+RELSF
Sbjct: 1   GKIYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPTIFTQTIEYSYDTLSARMRELSF 59

Query: 202 LNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I
Sbjct: 60  LNKGITITFTDKREKDKDGNFVSEVFHSDEGLKEYIRYLDGNREPIIAHVISMDHEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +A++
Sbjct: 180 SGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARV 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 300 TAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTE 350


>gi|124806668|ref|XP_001350789.1| term=DNA gyrase subunit B;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
 gi|23496917|gb|AAN36469.1| term=DNA gyrase subunit B;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
          Length = 1006

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 100/378 (26%), Positives = 162/378 (42%), Gaps = 53/378 (14%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           +YDA  I IL+GL+AV+KRP MYIG+TD   GLH +++E++DN++DE      + I V +
Sbjct: 122 NYDAKDIVILEGLEAVRKRPGMYIGNTD-VKGLHQILFEIIDNSVDEYNNFECNTIKVVI 180

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--------------- 113
           + D S T+ DNGRGIP D+H++   SA E ++T LH+G KF                   
Sbjct: 181 HKDDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNT 240

Query: 114 ----------------------------------YKVSGGLHGVGVSVVNALSSWLKLRI 139
                                             YK S GLHGVG+SV NALSS++K+++
Sbjct: 241 NTSEKNNRDNISNNNNNNNNNKRTKKNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKV 300

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRE 198
            R   IY +    G +   L +T    N  GT++ + P S IF      N D +++R+ +
Sbjct: 301 FRNNKIYSIELEKGKVTKELTITNCPINKRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQ 360

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           L++LN  +     D+RS     I      G ++     ++ K   + +      +  +  
Sbjct: 361 LAYLNEKLTFYFYDERSENKNSIY--ISKGNKSNEIIKNKKKNTSIDNENEDNKNNTSNY 418

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +      +D  +EN     N + +    T  + L       I      +       ++  
Sbjct: 419 VSNNTLKDDVSNENENMSDNLVNKNIEITDYNNLDFYNYEIIKHEYGLNEYITNITKNKT 478

Query: 319 GDDCREGFTSVLSIKMPD 336
                      +S    +
Sbjct: 479 NLFKDNDKIISISCYHKN 496



 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 178/650 (27%), Positives = 281/650 (43%), Gaps = 135/650 (20%)

Query: 198  ELSFLNSSVQISLIDKRSPEPR-EITMFYKGGIEAFVSYLDRHKKPLMQSPI---RIQGS 253
             +S    +  I + D  + +      + ++ G+  +++ + ++K  L +       I   
Sbjct: 434  NMSDNLVNKNIEITDYNNLDFYNYEIIKHEYGLNEYITNITKNKTNLFKDNDKIISISCY 493

Query: 254  RDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
              NI IDL M+W ++ Y+EN++ F NN+   DGGTH+  L+ A++R +   ++K+   K 
Sbjct: 494  HKNIYIDLRMKWLSNQYNENIISFVNNVNTTDGGTHVDALKYAVSRCVNYNIKKNEMIK- 552

Query: 313  DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            +  ++ G+  REG T++LS+KM +P F  QTK KL S  ++S++ES + + LS   +  P
Sbjct: 553  NFVNIPGEYIREGLTAILSVKMNNPEFEGQTKTKLGSHHLKSILESVIFEKLSEIFDFEP 612

Query: 373  LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDPKKSELFLVE 431
                 I  K L A +  + A+ ARDL R K     +++ PGKL DC   D  ++E+F+VE
Sbjct: 613  NLLSSIYFKALQAKLSDEEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVE 672

Query: 432  GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM-LSSQEIGTLITALGTGIGQDSF 490
            GDSA GSAKQ R+RE QAILPL+GKILNVE+ + +K    + E+ +LITALG  +  D+ 
Sbjct: 673  GDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALGLNVNYDNK 732

Query: 491  D---------------------------------------------INKLRYHKIIIMTD 505
            +                                              N LRY K+IIMTD
Sbjct: 733  NLKNNNILSNNKKGKNSKKKSDLKNSRFESTQNNNNILNKKKDILVDNTLRYGKVIIMTD 792

Query: 506  ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
            ADVDG HIR LLLTF +R    +I NG +Y+  PPLY I                    N
Sbjct: 793  ADVDGEHIRILLLTFLYRFQKEIIENGNVYVACPPLYKI------------------TYN 834

Query: 566  QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
            +     I+     +  ++    +  I      +        + DK   EQ  +      +
Sbjct: 835  KFFDNSIKDIVTKQFNVTTKQSKFIIHTYSDQELNNLLKLLDKDKIASEQKNMQNKIKNK 894

Query: 626  SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
            +       L+                 ++     +DI V            ++ + +F+F
Sbjct: 895  NMSSNGEPLSE----------------YNEQSKTNDIFVNEEG---STDSFIDDNVLFNF 935

Query: 686  GSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
              KY+      + E                      L +T                    
Sbjct: 936  SKKYEIQRFKGLGEMMAD-----------------QLWNTTMD----------------- 961

Query: 746  NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
                       P  R L+RV + DA +A+DL   LMG++ + R+ FI EN
Sbjct: 962  -----------PTVRKLIRVTVNDAIRANDLIFSLMGEDSKLRKNFILEN 1000


>gi|4514473|dbj|BAA75435.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 212/306 (69%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L I R G+I++  + +G    PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVVGDIE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    ++GG+ 
Sbjct: 60  TTVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVA--LEHIFDFEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINQGKTHLNEIFHFTTQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|159576553|dbj|BAF92825.1| DNA gyrase subunit B [Virgibacillus salexigens]
          Length = 325

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 151/328 (46%), Positives = 222/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALS+ L + + R+  IY ++F  G+    + V G   + TGT  
Sbjct: 1   YKVFGGLHGVGASVVNALSTSLDVHVHRDNKIYYLAFEKGVPQGEIEVIGET-DITGTIT 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F+P   IF+    +N+DTL  RLREL+FLN  + IS+ DKR+ +    +  Y+GGI+++
Sbjct: 60  HFVPDPTIFTETTEYNFDTLAQRLRELAFLNKGINISIEDKRT-DQEPTSYHYEGGIKSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++R K+ L   P   +G    IS+++A+++NDG+  N+  F NNI   +GG+H SG 
Sbjct: 119 VEFINRTKEALH-EPFYSEGEEQGISVEVAIQYNDGFTSNLYSFANNIHTYEGGSHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  K+   K++  ++ G+D REG T+++S+K PDP+F  QTK KL +SEV
Sbjct: 178 KTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V +S  ++  S +L E+P  AK++V+K L AS  R AA++AR+LTRRK  L++++LPG
Sbjct: 238 RTVTDSVFSELFSKFLFENPNVAKVVVEKGLMASRARAAAKKARELTRRKSALEVSNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D   SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|188090230|gb|ACD49349.1| gyrase subunit B [Xanthomonas axonopodis pv. citri]
 gi|188090254|gb|ACD49361.1| gyrase subunit B [Xanthomonas axonopodis pv. begoniae]
 gi|188090258|gb|ACD49363.1| gyrase subunit B [Xanthomonas cucurbitae]
 gi|188090264|gb|ACD49366.1| gyrase subunit B [Xanthomonas axonopodis pv. phaseoli]
 gi|188090270|gb|ACD49369.1| gyrase subunit B [Xanthomonas axonopodis pv. vignicola]
 gi|188090420|gb|ACD49444.1| gyrase subunit B [Xanthomonas axonopodis pv. citri]
 gi|188090424|gb|ACD49446.1| gyrase subunit B [Xanthomonas axonopodis pv. aurantifolii]
 gi|188090432|gb|ACD49450.1| gyrase subunit B [Xanthomonas axonopodis pv. phaseoli]
          Length = 288

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|188090356|gb|ACD49412.1| gyrase subunit B [Xanthomonas axonopodis pv. phaseoli]
          Length = 288

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 100/288 (34%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           DE +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DEAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|325089309|gb|EGC42619.1| DNA topoisomerase II [Ajellomyces capsulatus H88]
          Length = 1712

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 121/600 (20%), Positives = 213/600 (35%), Gaps = 25/600 (4%)

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIY 146
           K+E +   E++   L +   ++    KV+GG +G G  + N  S+   L          Y
Sbjct: 140 KKEKVYIPELVFGHLLSSSNYDDNQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKY 199

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLN 203
           + ++ + +             D  T+VTF+P    F +   + D    ++ R+ +L+   
Sbjct: 200 KQTWTDNMSKMGKPKITDCKGDDYTKVTFIPDFKKFGMDGIDDDFEALVKRRVYDLAGTC 259

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
             V + L   R P                 +      +   +    I     +   ++  
Sbjct: 260 K-VTVKLNGSRIPIRNFKQYMQMY----TNAIKKERGEEASKDKSEIITDNPDPRWEIGF 314

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
             +DG  + V  F N+I    GG+H++ +   +       VE      K   ++     R
Sbjct: 315 AVSDGSFQQV-SFVNSIATTSGGSHVNSVADQI---CNKLVEAVKKKNKTGATLKPAQIR 370

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
                 ++ ++ +P F+SQTKE+L +   +   +  ++D     + +  +   I+     
Sbjct: 371 NHIFVFVNAQIVNPAFTSQTKEQLTTKPSQFGSKCVLSDEFLKKILKTQVMENILHFAEK 430

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            A  +       R        L  A+  G       ++     L L EGDSA G A  GR
Sbjct: 431 KADQILKKTDGNRRSRMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGR 484

Query: 444 S---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500
           +    +   + PLRGK+LNV  A  D++  + EI  +   LG    ++  D   LRY  +
Sbjct: 485 AIVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHL 544

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESL 559
           +IMTD D DG+HI+ LL+ FF    PSL+      I    P+  + +G        +   
Sbjct: 545 MIMTDQDHDGSHIKGLLINFFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKVFF 604

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
                              K         +  D  +    L K     H     E  +I 
Sbjct: 605 TMQEYKTWQEIHGHDKRWEKKYYKGLGTSSTDDAEIYFRDLDKHLKQFHVMQDHEAELID 664

Query: 620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679
             F+ +   E       +            E ++   IN   IL            V++G
Sbjct: 665 LAFSKKKADER-KEWLRQFKPGTFLDHTTDEITYTDFINKELILFSMADNIRSIPSVIDG 723


>gi|146431186|gb|ABQ40576.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 276

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 144/277 (51%), Positives = 201/277 (72%), Gaps = 3/277 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 2   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQ 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AF
Sbjct: 61  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAF 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 120 VEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 180 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S VES + + LS +L E+P EAK++  K++DA+  
Sbjct: 240 VKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARA 276


>gi|188090342|gb|ACD49405.1| gyrase subunit B [Xanthomonas axonopodis pv. manihotis]
          Length = 288

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCES-----DQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     + E      DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQVEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|188090338|gb|ACD49403.1| gyrase subunit B [Xanthomonas translucens pv. graminis]
          Length = 288

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL N ++     +    +  I+ + L   +      +  +      +D   + 
Sbjct: 61  DDNALNAYLANSAVEGASLIPATDEPPITGSALEKLLLLFASANDAVARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E +Q   +     + NR +    + +  +        + ++  R 
Sbjct: 121 ALIDLPPLDVAQLEAEGEQHPTLDALQAVLNRGSLGTARYQLRFEPGTEQRPATLIAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL  +   S   +  R  +  +         ++       I+        +F
Sbjct: 181 HMGEELTQVLPMAVFESGELRPLREVALALNGLVREGAQIMRGNKTQSISSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|148762405|dbj|BAF63904.1| DNA gyrase subunit B [Virgibacillus carmonensis]
          Length = 325

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 153/328 (46%), Positives = 222/328 (67%), Gaps = 4/328 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVG SVVNALSS L++ +  +GN++ + F  G+    L V G   + TGT +
Sbjct: 1   YKVFGGLHGVGASVVNALSSNLEVYVHLDGNVHFLGFERGVPQEELKVIGDT-DITGTII 59

Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P ++IF+    +++DTL  R+REL+FLN  + ISL DKR+ E   +  +Y+GGI ++
Sbjct: 60  HFKPDTEIFTETTTYDFDTLALRVRELAFLNKGLSISLEDKRNDEEP-VNYYYEGGISSY 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V Y++  ++ L   P   +     I++++A+++NDG+  N+  F NNI   +GGTH SG 
Sbjct: 119 VEYINSSREVLH-VPFYTEAEDQGITVEVAIQYNDGFASNIYSFANNIHTHEGGTHESGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR I  Y  ++   K++  ++ GDD REG  +++SIK PDP+F  QTK KL  SEV
Sbjct: 178 KTGLTRVINDYARRNNLFKENDPNLTGDDVREGMAAIISIKHPDPQFEGQTKSKLGGSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R+V +S  ++  S +L E+P  AKI+V+K L AS  R AA++AR+LTRRK  L+I++LPG
Sbjct: 238 RTVTDSMFSEAFSKFLFENPSVAKIVVEKGLMASRARAAAKKARELTRRKSALEISNLPG 297

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAK 440
           KLADCS +D K SEL++VEGDSAGGSAK
Sbjct: 298 KLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|308153132|dbj|BAJ22155.1| DNA gyrase subunit B [Nocardioides albus]
          Length = 425

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 178/426 (41%), Positives = 255/426 (59%), Gaps = 39/426 (9%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGND 168
              YKVSGGLHGVG SVVNALS+ L + IK  G ++E  F +G+ D  L        G  
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTNLHMEIKNRGRLWEQEFTSGVPDYDLREVCELEEGER 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------- 215
           TGT +++  SS+IF   ++N +T+    RE +FLN  ++I L D+R              
Sbjct: 61  TGTTISWNASSEIFESTEYNLETISSHFRETAFLNKGLRIELRDERPQASAIAEAVEDGT 120

Query: 216 -----------------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR---- 254
                                E + +Y+ G+  +V +L++ K P+         +     
Sbjct: 121 VEQDTDGADELHSSGNGERVLEQSFYYERGLADYVDHLNKRKTPVSSIIAFETETDEKAP 180

Query: 255 DNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           + +S+++AM+W    Y+E+V  F N +    GGTH  G R+ALT  I  + E+    KK 
Sbjct: 181 NPMSVEIAMQWQASSYNESVHTFANTVNTPGGGTHEEGFRAALTTLINRWGEEWGQIKKK 240

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           +  + GDD REG T+++S+K+ +P+F  QTK+KL ++EV+  V+  VND L AWLEE+P 
Sbjct: 241 EDRLTGDDIREGLTAIISVKISEPQFEGQTKDKLGNTEVKGFVQGAVNDQLGAWLEENPA 300

Query: 374 EAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           E K I++K + A+  R AAR+ARD    RKG+     LPGKLADC   +P++ E+F+VEG
Sbjct: 301 EGKEIIRKSMAAASARIAARKARDLARNRKGIGGGGGLPGKLADCQSTNPEECEIFVVEG 360

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSAGGSAK GR    QAILP+RGKILNVE+AR DK+L++QE+ ++I+ALGTG+  D FDI
Sbjct: 361 DSAGGSAKSGRDPRIQAILPIRGKILNVEKARIDKVLANQEVQSIISALGTGV-HDDFDI 419

Query: 493 NKLRYH 498
           N+LRYH
Sbjct: 420 NRLRYH 425


>gi|188090274|gb|ACD49371.1| gyrase subunit B [Xanthomonas oryzae]
          Length = 288

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           +RYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   MRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARTAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E +Q   +     + NR      + +  +  +  N+   ++  R 
Sbjct: 121 ALIDLPPLDVETLQAEGNQHPALDALQAVLNRGTLGTARYQLRFDPATENAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I +A  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEEAVAADQ 288


>gi|213420236|ref|ZP_03353302.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 115

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 77/114 (67%), Positives = 97/114 (85%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           ++SYD+ SI++LKGLDAV+KRP MYIGDTD  +GLHHM++EV+DNAIDE+L G+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGL
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115


>gi|188090236|gb|ACD49352.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
          Length = 288

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRI 667
             +     + +  Q              + NR      + +  +  + +  ++ ++  R 
Sbjct: 121 ALIDLPPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAGAADQ 288


>gi|188090234|gb|ACD49351.1| gyrase subunit B [Xanthomonas axonopodis pv. axonopodis]
          Length = 288

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAITRNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E DQ   +     + NR      + +  +    +N+   ++  R 
Sbjct: 121 ALIDLPPLDVEKLHAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGNDNAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|66271258|gb|AAY43842.1| DNA gyrase subunit B [Vibrio sp. BR 9807]
          Length = 307

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 166/309 (53%), Positives = 229/309 (74%), Gaps = 3/309 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIR 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV 
Sbjct: 60  FWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+ +K P+++        R++ IS+++AM WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 119 HLNTNKTPIIEKIFHFDFEREDGISVEVAMHWNDGFQENIYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 AALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG L++A LPGK
Sbjct: 239 SAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALNLAGLPGK 298

Query: 414 LADCSERDP 422
           LADC E+DP
Sbjct: 299 LADCQEKDP 307


>gi|209407296|emb|CAP72533.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 303

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 164/306 (53%), Positives = 223/306 (72%), Gaps = 3/306 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I+REG ++E ++ +G+   PL   G  G D+GTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEELVLTIRREGKVWEQTYRHGVPQAPLAAVGETG-DSGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AF
Sbjct: 60  IHFKPSAETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERNAKE--ELFKYEGGLSAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V+YL+ +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G 
Sbjct: 118 VAYLNTNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           RSALTR + +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RSALTRNLNNYIEQEGLAKKHKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPG
Sbjct: 238 KTAVEQEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 297

Query: 413 KLADCS 418
           KLADC 
Sbjct: 298 KLADCQ 303


>gi|164456685|dbj|BAF97835.1| gyrase B subunit [Vibrio kanaloae]
          Length = 277

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 148/279 (53%), Positives = 199/279 (71%), Gaps = 3/279 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL + G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYNHGEPQAPLAIVGDT-DRTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS + F+  +++YD L  RLRELSFLNS V I LID+R  E +     Y+GGI+
Sbjct: 60  TEIRFWPSEETFTNIEYHYDILAKRLRELSFLNSGVSIRLIDER-EEDKMDHFEYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL
Sbjct: 119 AFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G RSALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRSALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           SEV+S VES + + LS +L E+P EAKI+  K++DA+  
Sbjct: 239 SEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARA 277


>gi|328725424|ref|XP_003248474.1| PREDICTED: DNA gyrase subunit B-like, partial [Acyrthosiphon pisum]
          Length = 619

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 153/339 (45%), Positives = 226/339 (66%), Gaps = 3/339 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALSS L++ +     IY  ++  G+    L V G   + TGT + F    +IF+    +
Sbjct: 1   NALSSNLEVYVHLNNKIYHQAYERGVPAFDLKVIGDTDH-TGTTIRFKADGEIFTETTEY 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRHKKPLMQS 246
           +Y+TLQ R+REL+FLN  +QISL D+R  E  +     Y+GGI+++V  L++ K+ L   
Sbjct: 60  DYETLQKRIRELAFLNKGIQISLRDERDDENIQEDSYHYEGGIKSYVEMLNKSKEVLYDE 119

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           PI I  ++D++ +++A+++N+G+  N+L + NNI   +GGTH  G + ALTR I SY  K
Sbjct: 120 PIYIHDTKDDVEVEIAIQYNNGFATNLLTYANNIHTYEGGTHEDGFKRALTRVINSYGIK 179

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           +   K+ +  + G+D REG T+V+S+K  DP+F  QTK KL +SEVR +V+   ++    
Sbjct: 180 NKLLKEGEEKLSGEDVREGMTAVVSVKHGDPQFEGQTKTKLGNSEVRQIVDKLFSELFER 239

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P  A+IIV K + AS  R AA++AR++TRRK  L+++SLPGKLADCS + P++ E
Sbjct: 240 FLLENPNVARIIVDKGVMASRARLAAKKAREVTRRKSALEVSSLPGKLADCSSKKPEECE 299

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           L++VEGDSAGGSAK  R  + QAILPLRGKILNVE+AR 
Sbjct: 300 LYIVEGDSAGGSAKLRRDSKTQAILPLRGKILNVEKARL 338


>gi|188090268|gb|ACD49368.1| gyrase subunit B [Xanthomonas axonopodis pv. vasculorum]
 gi|188090352|gb|ACD49410.1| gyrase subunit B [Xanthomonas axonopodis pv. vasculorum]
          Length = 288

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIGRNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E DQ   +     + NR      + +  +    +N+   ++  R 
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGNDNAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|188090266|gb|ACD49367.1| gyrase subunit B [Xanthomonas axonopodis pv. glycines]
 gi|188090336|gb|ACD49402.1| gyrase subunit B [Xanthomonas axonopodis pv. glycines]
          Length = 288

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAITRNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|311993287|ref|YP_004010152.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Acj9]
 gi|295917244|gb|ADG59915.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Acj9]
          Length = 608

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 144/589 (24%), Positives = 231/589 (39%), Gaps = 72/589 (12%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----------------GLHHM 44
           M+            I++L   D V KRP MY+G T  E                 GL  +
Sbjct: 1   MTTEQPE-------IKMLSDRDHVLKRPGMYVGSTSNEDHERFLFGKYQKVKYVPGLVKI 53

Query: 45  IYEVLDNAIDESLE---GYADIITVTLNMDGSCTVSDNGRGIPTDL---HKEEGISAAEV 98
           I E++DN++DE++     +A+ I + ++   +  VSDNGRGIP  L    +   +     
Sbjct: 54  IDEIIDNSLDEAIRTNFEFANKIELKIDG-NAVFVSDNGRGIPQGLITTPEGTQLPGPVA 112

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158
             TR  AGG F   + + + G++GVG S+ N  S           N   +     + +  
Sbjct: 113 CWTRTKAGGNFGNDADRKTAGMNGVGSSLTNIFSQEFTGTTCDGENTITVHCTGNMENVD 172

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFS---VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
                  G   GT V+F P  D+     +     D ++ RL+ L+ +  ++         
Sbjct: 173 WKSKK--GGRQGTSVSFTPDFDLLDCKEIDQTIIDIVEDRLQILAVIYPAIAFKF----Q 226

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
               +        +    + +       +       G R                   L 
Sbjct: 227 GVRVQGNFKKYAKMYDENAIIMETDNIQLSIGRSEDGFRH------------------LS 268

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI-KM 334
           F N I  K GG+H+  L   L+ ++   +++       K  V     +E  T +L I  M
Sbjct: 269 FVNAIHTKVGGSHIDYLMEELSNELMPMIKRK-----HKVEVNKARIKECLTVLLFIKDM 323

Query: 335 PDPRFSSQTKEKLVSS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           P+ RF SQTKE+L S   EV++ +       L+     +      I++ VL   +  + A
Sbjct: 324 PNMRFDSQTKERLTSPWGEVKAHM-DIDVKKLARMFINNDDVLMPIIEAVLAKLLAAEKA 382

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
              +   +         +   L     R+  ++ LFL EGDSA G     R RE Q   P
Sbjct: 383 ANTKAAKKAAKAKVAKHIKPNLYG---REDVETTLFLTEGDSAIGYLLTTRDRELQGGYP 439

Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512
           LRGK++N    + ++ML ++EI  +    G  IG+ +     L Y  I IM DAD DG  
Sbjct: 440 LRGKVMNTWGMQPNEMLKNKEIFDICAITGLTIGEKA---EGLNYKNIAIMVDADPDGLG 496

Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
                L  FF   P L   G + + K P+    +GK  ++  D  + E 
Sbjct: 497 SIYPSLLAFFSNWPELFDQGRIRLCKSPIIIAEKGKDEKWYYDLAAYEA 545


>gi|146431958|gb|ABQ40961.1| DNA gyrase B subunit [Vibrio campbellii]
          Length = 276

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 145/278 (52%), Positives = 201/278 (72%), Gaps = 3/278 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G     TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDTE-KTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           V+S VES + + LS +L E+P EAK++  K++DA+  R
Sbjct: 239 VKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAR 276


>gi|188090272|gb|ACD49370.1| gyrase subunit B [Xanthomonas axonopodis pv. vasculorum]
          Length = 288

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/288 (33%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAITRNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E DQ   +     + NR      + +  +    +N+   +L  R 
Sbjct: 121 ALIDLPPLDVEKLHAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGNDNAPATLLAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|295148897|gb|ADF80934.1| DNA gyrase subunit B [Vibrio sp. AM2]
          Length = 283

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 144/279 (51%), Positives = 202/279 (72%), Gaps = 3/279 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVG+SVVNALS  ++L I R G I+  ++ +G+ D PL   G    D+GT+
Sbjct: 2   SYKVSGGLHGVGISVVNALSEKVELTIHRNGKIHTQTYHHGVPDEPLKEIGDTE-DSGTK 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F PS++ F+  +F Y+ L  RLRELSFLNS V I L D+R  + ++    Y GGI+AF
Sbjct: 61  VRFWPSAETFTNIEFVYEILAKRLRELSFLNSGVSIHLRDER-EDNKQNHYMYDGGIQAF 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V++L+R+K P+ +        R++ I++++A++WNDG+ E++ CFTNNIPQ+DGGTHL+G
Sbjct: 120 VTHLNRNKTPIHEKVFHFVQEREDGITVEVALQWNDGFQESIFCFTNNIPQRDGGTHLAG 179

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + SY++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 180 FRAALTRTLNSYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 239

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           V+S VE+ + + L  +L EHP EAK I  K++DA+  R+
Sbjct: 240 VKSAVETTMGEKLGDYLAEHPNEAKTICTKIIDAARARE 278


>gi|208973050|dbj|BAG74368.1| DNA gyrase B [Paenibacillus lautus]
          Length = 298

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 136/300 (45%), Positives = 207/300 (69%), Gaps = 4/300 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVGVSVVNALSS + +++KR+G+IY+  +  G+    + V G + +DTG
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGDS-DDTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T VTFLP  +IF+    ++Y+TL  R+REL+FLN  + ++L D+R+         Y+GGI
Sbjct: 60  TTVTFLPDPEIFTETTEYDYNTLLTRIRELAFLNKGIALTLTDERTG--ASDYFKYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             +V +L+  K+ L + PI ++GSRDNI +++++++ND Y EN+  F NNI   +GGTH 
Sbjct: 118 IEYVKFLNEKKEALHEDPIYVEGSRDNIQVEVSLQYNDSYTENIYSFANNINTHEGGTHE 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG +SALTR I  Y  K+   K +  ++ GDD REG T+++S+K+P+P+F  QTK KL +
Sbjct: 178 SGFKSALTRIINDYARKTGLIKDNTNNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGN 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEVR +VES   + L  +L+E+P  ++ I++K L AS  R+AAR+AR++TRRK  L++++
Sbjct: 238 SEVRGIVESLFAEKLQEFLQENPSVSRRILEKALQASRAREAARKAREMTRRKSALEVSA 297


>gi|12060212|dbj|BAB20460.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
          Length = 305

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 160/308 (51%), Positives = 223/308 (72%), Gaps = 4/308 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   T
Sbjct: 1   DDYSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+
Sbjct: 60  GTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGL 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFV YL+ +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTH
Sbjct: 118 RAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L G RS+LTR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLV
Sbjct: 178 LVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV++ VE  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA
Sbjct: 238 SSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 297

Query: 409 SLPGKLAD 416
            LPGKLAD
Sbjct: 298 GLPGKLAD 305


>gi|93277210|gb|ABF06423.1| gyrase B [Streptomyces sp. C33]
          Length = 361

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 149/362 (41%), Positives = 221/362 (61%), Gaps = 10/362 (2%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS+ L + +K +G+ +   +  G    PL     A  +TGT VTF    DIF   D+++
Sbjct: 1   ALSTKLVVEVKTDGHRWTQDYKLGAPTAPLQK-NEATEETGTSVTFWADPDIFETTDYSF 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMFYKGGIEAFVSY-LDRHKKP 242
           +TL  R +E++FLN  + I+L D+R        +   +   Y+GGI  FV Y   R  + 
Sbjct: 60  ETLARRFQEMAFLNKGLTIALTDEREGHVDEEGKQTSVRYHYEGGISDFVRYLNSRKGEL 119

Query: 243 LMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +  + I  +       +S+++AM+WN+ + E V  F N I   +GGTH  G R+ALT  I
Sbjct: 120 VHPTVIDFEAEDTERLLSVEVAMQWNNQFSEGVYSFANTIHTHEGGTHEEGFRAALTGLI 179

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    +    ++ G+D REG T+++S+K+ +P+F  QTK KL ++E ++ V+  V
Sbjct: 180 NRYARERKLLRDKDDNLTGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKIV 239

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           ++  + WL+ +P EA  I++K + A+  R AAR+ARDLTRRKG+L+ ASLPGKL+DC   
Sbjct: 240 HEYFADWLDRNPNEAADIIRKGIQAATARVAARKARDLTRRKGLLETASLPGKLSDCQSN 299

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP K E+ +VEGDSA  SAK GR  E QAILP+RGKILNVE+AR DK+L + E+  LI+A
Sbjct: 300 DPAKCEIXIVEGDSAHASAKXGRDPEYQAILPIRGKILNVEKARIDKVLQNAEVQALISA 359

Query: 481 LG 482
            G
Sbjct: 360 FG 361


>gi|4514493|dbj|BAA75445.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 212/306 (69%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L I R G+I++  + +G    PL + G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKIVGDVA-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TIVRFWPSTETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVA--LEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINQGKTHLNEIFHFTTQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|224007305|ref|XP_002292612.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971474|gb|EED89808.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1179

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 110/579 (18%), Positives = 212/579 (36%), Gaps = 89/579 (15%)

Query: 19  KGLDAVKKRPSMYIGDT----------------------DGESGLHHMIYEVLDNAIDES 56
             L+ +  RPSMYIG T                           L  +  E+L NA D  
Sbjct: 11  TPLEHILLRPSMYIGPTEHADPKSCSSTNSPWTMQRQELSYVPALLKIFDEILVNASDNR 70

Query: 57  LE--GYADIITVTLN----MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110
           L   G  +      +     D   ++++NG+ IP  +H++E +   E++   L  G  FN
Sbjct: 71  LRHPGSCN------HFPSSSDPYISITNNGKSIPIQIHRKENMYIPELLFGHLLTGSNFN 124

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG-------NIYEMSFINGILDNPLVVT- 162
               +++GG HG G  + N  S    + I  +G         Y+  + + +         
Sbjct: 125 DDQKRLTGGRHGYGAKLTNVFSKQFVVEIG-DGHSSKGKIKTYKQVWEDNMSVCHEAEVV 183

Query: 163 ---GSAGNDTG----TEVTFLPSSDIF-------SVQDFNYDTLQHRLREL-SFLNSSVQ 207
                  +  G    T ++F+P             + +  Y  ++ R+ ++       + 
Sbjct: 184 SRDKKDADGKGNLDYTRISFIPDLARLTGDRKTEMLPEEEYQLMKRRVVDIAGCSGGKLT 243

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           ++L  +                 A +          +   +     + N   ++A+  ++
Sbjct: 244 VTLNGEEISVSGFEDY-------ANLYRQPESSATPLPPMVY---HKLNSRWEVAVGLSE 293

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD------- 320
                 + F N +    GGTH+  L   +++ I  ++  +  +++      G        
Sbjct: 294 TKSLESISFVNGMNTSRGGTHVDALARQISQYIADHI-NNKMARQLDNLQSGQPISVSVR 352

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
             R      ++  + +P F SQ K + ++S   +    F            P   + +++
Sbjct: 353 MVRRHLFLCVNCLIENPSFDSQMK-ECLTSNPDNFGSHFELSNSFLRKLVGPGIVEEVLR 411

Query: 381 KVLDASM---VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
             + A      R    + +        L+ A+L G   D    +P    L L EGDSA  
Sbjct: 412 MAMGAQQVNMARLLKEQTKRQVLSIPKLEDANLAGST-DIGTENP--CTLILTEGDSAKA 468

Query: 438 SAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN- 493
            A  G     R++  + PLRGK +NV      ++ ++ E+  +   LG    +       
Sbjct: 469 LAVAGLEVVGRDHYGVFPLRGKFMNVRNVTVKQLATNAELKAMCAILGLQFEKSYDTAKE 528

Query: 494 --KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
             +LRY  +++MTD D DG+HI+ L++  F    P+L+ 
Sbjct: 529 RQELRYGHVMLMTDQDADGSHIKGLIMNMFRFFWPALLK 567


>gi|188090426|gb|ACD49447.1| gyrase subunit B [Xanthomonas albilineans]
          Length = 288

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 144/288 (50%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E DQ   +     + NR      + +  +    +N+   ++  R 
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLMAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL  ++  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMAAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|309807646|ref|ZP_07701588.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169112|gb|EFO71188.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners LactinV 01V1-a]
          Length = 479

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 167/428 (39%), Positives = 247/428 (57%), Gaps = 10/428 (2%)

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            +TF P S IFS   + Y+T+Q RLRE +FL   V+ +L D+R P+ ++   +  G    
Sbjct: 1   MITFKPDSKIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IK 58

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
                    K  +      +G  DNI ++ + ++NDGY ENV+ F NN+   DGG+H +G
Sbjct: 59  SFVSYLNEDKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAG 118

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVS 349
            RS  TR    Y +K    K   + + G D REG ++VLS+K+P+    F  QTK KL +
Sbjct: 119 ARSGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGT 178

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + RSVV++ + + LS +L E+   A+ +V+K   A   R+AA++ARD +R         
Sbjct: 179 PQARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKE 238

Query: 410 L-PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
           +  GKL     R+P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR   +
Sbjct: 239 VLSGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDI 298

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
             ++EI T+I  +G G+G   F+I    Y+KIIIMTDAD DGAHI+ LLLTFF+R M  +
Sbjct: 299 FKNEEINTMIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPM 357

Query: 529 IHNGFLYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           I  G +YI  PPLY + +G+     ++Y   +E L+  +        ++ F     + + 
Sbjct: 358 IEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNAD 417

Query: 585 NDLRNFID 592
                 ++
Sbjct: 418 QLWETTMN 425



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%)

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738
           F +      I + R+      +  L    G  + I        L   +   G KG S+QR
Sbjct: 349 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFG-KGYSLQR 407

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+   + LMGD+V  RR++I EN
Sbjct: 408 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAEHRVTTLMGDKVAARRKWIDEN 464


>gi|209863363|gb|ACI88781.1| DNA gyrase subunit B [Aeromonas sp. JH70]
          Length = 334

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 199/337 (59%), Positives = 255/337 (75%), Gaps = 3/337 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           +GKILNVE+ARFDKM+SSQE+GTLITALG GIG+D +
Sbjct: 298 KGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEY 334


>gi|290795089|gb|ADD64560.1| DNA gyrase B [Vibrio cyclitrophicus]
          Length = 278

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 150/280 (53%), Positives = 199/280 (71%), Gaps = 3/280 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TE+ F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI+
Sbjct: 60  TEIRFWPSEETFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGIQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL
Sbjct: 119 AFVEHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           SEV+S VES + + LS +L E+P EAKI+  K++DA+  R
Sbjct: 239 SEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARAR 278


>gi|210078011|emb|CAR94873.1| DNA gyrase B subunit [Ochrobactrum pseudogrignonense]
          Length = 341

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 220/342 (64%), Positives = 279/342 (81%), Gaps = 1/342 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           LKL+I+R G I+EM+F +G+ D PLV+TG AG+DTGTEV+FLPS + FS+ +F+YDTL+ 
Sbjct: 1   LKLKIRRAGKIHEMAFTHGVADAPLVITGDAGSDTGTEVSFLPSPETFSMVEFDYDTLER 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLREL+FLNS V+I L D+R  + RE  + Y GG+  FV Y+D+ KK L+++PI I+  +
Sbjct: 61  RLRELAFLNSGVRIKLTDRRHADIREQELHYDGGVVEFVKYIDQSKKSLLETPIYIKSEK 120

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQ+T Y + S  +KK+K
Sbjct: 121 DGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYADASGMTKKEK 180

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ LS WLEEHP  
Sbjct: 181 VSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSTWLEEHPAG 240

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
            K IV+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLADC ERDP KSE+F+VEGDS
Sbjct: 241 GKTIVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDPAKSEIFIVEGDS 299

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           AGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GT
Sbjct: 300 AGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGT 341


>gi|171702638|dbj|BAG16287.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702640|dbj|BAG16288.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702642|dbj|BAG16289.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702644|dbj|BAG16290.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702646|dbj|BAG16291.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702648|dbj|BAG16292.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702650|dbj|BAG16293.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702652|dbj|BAG16294.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702654|dbj|BAG16295.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702656|dbj|BAG16296.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702658|dbj|BAG16297.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702660|dbj|BAG16298.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702662|dbj|BAG16299.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702664|dbj|BAG16300.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702666|dbj|BAG16301.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702668|dbj|BAG16302.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702670|dbj|BAG16303.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702672|dbj|BAG16304.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702674|dbj|BAG16305.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702676|dbj|BAG16306.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702678|dbj|BAG16307.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702680|dbj|BAG16308.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702682|dbj|BAG16309.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702684|dbj|BAG16310.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702686|dbj|BAG16311.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702688|dbj|BAG16312.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702690|dbj|BAG16313.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702692|dbj|BAG16314.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702694|dbj|BAG16315.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 356

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 154/349 (44%), Positives = 217/349 (62%), Gaps = 6/349 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G IYE  +  G    P+   G      GT VTF P   IF+    ++YDTL  R+RELSF
Sbjct: 1   GKIYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSF 59

Query: 202 LNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I
Sbjct: 60  LNKGITITFTDKREKDKDGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D +  +LEE+P +A+I
Sbjct: 180 SGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG
Sbjct: 300 TAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIG 348


>gi|124300765|dbj|BAF45880.1| gyrase B [Erwinia mallotivora]
          Length = 333

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 193/336 (57%), Positives = 256/336 (76%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRE 198
           +REG +++  +++G+   PL VTG   + TGT V F PS + F+   DF Y+ L  RLRE
Sbjct: 1   RREGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVTDFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDDKK--DHYHYEGGIKAFVEYLNRNKTPIHPNVFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L  +L E+P +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLGEYLLENPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  SE++LVEGDSAGGS
Sbjct: 238 VGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEIYLVEGDSAGGS 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+
Sbjct: 298 AKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEV 333


>gi|291278196|gb|ADD91579.1| GyrB [uncultured Serratia sp.]
          Length = 311

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 172/314 (54%), Positives = 231/314 (73%), Gaps = 4/314 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG ++E ++  G   +PL V G   + TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPLSPLKVVGET-DQTGTTVRFWP 59

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S + F +  +F YD L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL
Sbjct: 60  SYETFTNNTEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+
Sbjct: 118 NKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E+ +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 238 ETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 297

Query: 417 CSERDPKKSELFLV 430
           C ERDP  SEL+LV
Sbjct: 298 CQERDPALSELYLV 311


>gi|92919029|gb|ABE96861.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 323

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 184/326 (56%), Positives = 242/326 (74%), Gaps = 3/326 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPLRGKILNVER 462
           GSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 298 GSAKQGRNRKNQAILPLKGKILNVEK 323


>gi|258572076|gb|ACV82176.1| DNA gyrase subunit B [Burkholderia cenocepacia]
 gi|258572080|gb|ACV82177.1| DNA gyrase subunit B [Burkholderia cenocepacia]
 gi|258572082|gb|ACV82178.1| DNA gyrase subunit B [Burkholderia cenocepacia]
 gi|258572086|gb|ACV82179.1| DNA gyrase subunit B [Burkholderia cenocepacia]
          Length = 246

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 165/249 (66%), Gaps = 19/249 (7%)

Query: 71  DGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           D S +V+DNGRGIPTD+      E   SAAE++MT LHAGGKF+Q SYKVSGGLHGVGVS
Sbjct: 1   DNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVT 174
            VNALSSWL+L ++R+G    M F  G+              +P++VTG    + GTEV 
Sbjct: 61  CVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTE-NRGTEVH 119

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV 
Sbjct: 120 FMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVE 177

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           ++++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DGGTHL+GLR+
Sbjct: 178 FINKTKSTLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRA 237

Query: 295 ALTRQITSY 303
           A+TR I  Y
Sbjct: 238 AMTRVINKY 246


>gi|171702716|dbj|BAG16326.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-50]
 gi|171702726|dbj|BAG16331.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-76]
 gi|171702744|dbj|BAG16340.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-95]
          Length = 356

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 157/351 (44%), Positives = 222/351 (63%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
           G IYE  +  G    P+   G      GT VTF P + IF+   +++YDTL  RLRELSF
Sbjct: 1   GKIYEQEYEKGKSLYPVKQIG-TTEKRGTIVTFKPDATIFTQTLEYSYDTLAARLRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR           T   K G++ F+ +LD +++P++   I ++  + +I
Sbjct: 60  LNKGITITLTDKRHLAEDGSQPVETFHSKEGLKEFIKFLDGNREPIISHVISMENDKGDI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S    K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +AK 
Sbjct: 180 AGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKT 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E+FLVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEIFLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 300 TAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTE 350


>gi|164456631|dbj|BAF97808.1| gyrase B subunit [Enterovibrio coralii]
          Length = 275

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 144/277 (51%), Positives = 200/277 (72%), Gaps = 3/277 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I R G I++  + +G+ + PL   G   ++TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELTIWRHGQIHQQVYHSGVPEAPLAPIGET-DETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS + FS   F+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI 
Sbjct: 60  TRIRFWPSGETFSDLLFHYDILAKRLRELSFLNSGVSIRLNDER-EEDKHDHFTYEGGIR 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+R+K P+  S    +  R++ ++++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVEHLNRNKNPIHPSVFHFEHEREDGVTVEVSMQWNDGFQENIYCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +++EK   SKK   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNTFMEKEGYSKKANAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           SEV+S VES +N+ LS +L E+P ++KI+  K++DA+
Sbjct: 239 SEVKSAVESAMNEKLSEFLIENPQDSKIVCTKIIDAA 275


>gi|188090444|gb|ACD49456.1| gyrase subunit B [Xanthomonas arboricola]
          Length = 288

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRI 667
             +     + +  Q              + NR      + +  +  + +  ++ ++  R 
Sbjct: 121 ALIDLPPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I +A  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEEAVAADQ 288


>gi|4514495|dbj|BAA75446.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 212/306 (69%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L I R G+I++  + +G    PL + G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKIVGDVE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TIVRFWPSTETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVA--LEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINQGKTHLNEIFHFTTQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|26334167|dbj|BAC30801.1| unnamed protein product [Mus musculus]
          Length = 507

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 175/484 (36%), Gaps = 52/484 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 43  YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 102

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 103 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 162

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +    +++N ++            + 
Sbjct: 163 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFRQTWMNNMMKTSEAKIKHFDGED 222

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 223 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKK---------LPV 273

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 274 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 332

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 333 RHVDYVVDQVVSKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 389

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           + + + +S                +    + I+  V   +         +  + +   + 
Sbjct: 390 M-TLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQ---TQLNKKCSSVKYSKIK 445

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVE 461
                    D   +   +  L L EGDSA      G    GR R    + PLRGKILNV 
Sbjct: 446 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVR 503

Query: 462 RARF 465
            A  
Sbjct: 504 EASH 507


>gi|110224950|dbj|BAE97464.1| DNA gyrase subunit B [Streptococcus anginosus]
          Length = 300

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 194/300 (64%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G IY   +  G +   L + G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIYFQEYRRGHVVADLEIIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLEQTKDYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 ASYVQYINENKDVIFENPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|290796564|gb|ADD64852.1| gyrase subunit B [Xanthomonas arboricola]
          Length = 288

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRI 667
             +     + +  Q              + NR      + +  +  + +  ++ ++  R 
Sbjct: 121 ALIDLPPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVPADQ 288


>gi|188090430|gb|ACD49449.1| gyrase subunit B [Xanthomonas oryzae pv. oryzicola]
          Length = 287

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 142/287 (49%), Gaps = 7/287 (2%)

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD
Sbjct: 1   RYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKD 60

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           + +L  YL + ++     +    +  I+   L   +      ++ I      +D   +  
Sbjct: 61  DAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTA 120

Query: 616 AVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRIA 668
            +     +      E +Q   +     + NR      + +  +  +  N+   ++  R  
Sbjct: 121 LIDLPPLDVETLHAEGNQHPALDALQAVLNRGTLGTARYQLRFDPATENAPATLVAIRRH 180

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            G +   VL   +  S   +  R  S  + +       ++       IT        +  
Sbjct: 181 MGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLLD 240

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
             +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I +A  AD 
Sbjct: 241 EAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEEAVAADQ 287


>gi|188090406|gb|ACD49437.1| gyrase subunit B [Xanthomonas codiaei]
          Length = 288

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      +  I      +D   + 
Sbjct: 61  DDAALNAYLASSAVEGAALIPAADEPPITGEALEKLLLLFAGANDAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D    +     + NR      + +  +  +  N  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPTLDALQAVLNRGTLGTARYQLRFDPATENTAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  +  +         ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVALALHGLVREGAQIVRGNKSHTITSFGQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|66391811|ref|YP_238736.1| gp60plus39 [Aeromonas phage 31]
 gi|62114648|gb|AAX63496.1| gp60plus39 [Aeromonas phage 31]
          Length = 607

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 132/612 (21%), Positives = 255/612 (41%), Gaps = 69/612 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT----------------DGESGLHHMIYEVLDNAIDE 55
           +D  ++L   + V  RP+MY+G                      GL  +I E++DN++DE
Sbjct: 2   SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDE 61

Query: 56  SLE---GYADIITVTLNM-DGSCTVSDNGRGIPTDLHKEEG--ISAAEVIMTRLHAGGKF 109
            +     +A+ I +  ++ +GS TV DNGRGIP  + +     +       T+  AG  F
Sbjct: 62  GIRTDFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPVAAWTQTMAGSNF 121

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY-EMSFINGILDNPLV-VTGSAGN 167
           +  + +VS G++GVG S+ N  S         +G  +  ++   G  +       G    
Sbjct: 122 DDTN-RVSMGMNGVGSSLTNFFSKKFIGETC-DGKNFLTVTCSEGASNIDWKTKPGKTK- 178

Query: 168 DTGTEVTFLPSSDIFS---VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
             GT V F+P    F    +     D +  R+  LS +   ++ ++  + +         
Sbjct: 179 --GTSVYFIPDEKHFEGRTIDQQIIDIISDRITALSVVFPQIKFTINGQIASMKFADYAK 236

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
             G                    + ++  R +I+I  +    +G+ +  + + N +  K+
Sbjct: 237 MFG-----------------DESLIVESDRFSIAICNS---PEGFRQ--VSYVNGLNIKN 274

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQT 343
           GG+H+  L   ++ ++   ++K       K  +     +E  T V+ ++ M + RF SQT
Sbjct: 275 GGSHIDYLVDGISEELMPAIKKK-----HKIEISKARVKECLTMVVVVRGMSNLRFDSQT 329

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           KE+L +      V+S   D     L +  +    I++ +++A++ R  A     +T+ + 
Sbjct: 330 KERLTNP--AGEVKSHF-DLDFKKLSKQIMNTDAILQPIIEAALARHLAAEKAAMTKAQK 386

Query: 404 VLDIASLPGKLADCSERDPK-KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
                +    +          ++ LFL EG+SA G   + +         LRGK++N   
Sbjct: 387 AAAKTNCAKHIKAGEWGRNDIETTLFLTEGESAIGYLLKVKDENLHGGYALRGKVMNTWG 446

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA-HIRTLLLTFF 521
            +   +L + E+  +    G  +  +  DI++ +Y  I IMTDAD DG   I   LL FF
Sbjct: 447 MKGSDVLKNNELSDICAITGLDL-ANPDDISQRKYKNIAIMTDADPDGQGSIYPCLLAFF 505

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581
            R  P L   G +  +K P+  + +GK++++       E     +        +    G 
Sbjct: 506 AR-WPKLFDEGSVRFVKTPVVILNKGKNIKWFYTLTEFEK--EKKDYKGWDLRYIKGLGS 562

Query: 582 ISKNDLRNFIDD 593
           + +++    +++
Sbjct: 563 LREHEYSEVVNN 574


>gi|307343832|emb|CBJ19521.1| gyrase B subunit [Micromonospora sp. CR18]
          Length = 369

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 163/373 (43%), Positives = 239/373 (64%), Gaps = 9/373 (2%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           + + I ++G ++   + N     PL   G   + TG+ V+F P +D+F   DF++ T+  
Sbjct: 1   MAVEIHKDGFVWRQQYHNSKP-TPLEK-GETTDRTGSAVSFWPDADVFETVDFDFQTIYR 58

Query: 195 RLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           RL+E++FLN  + I L+D+R       + RE+T  YKGGI  FV +L+  K P+ ++ + 
Sbjct: 59  RLQEMAFLNRGLTIHLLDERVSDGEEGKQREVTFLYKGGIADFVRHLNASKNPIHKTVVE 118

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y      
Sbjct: 119 FGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGTDKK- 177

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
             K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W +
Sbjct: 178 LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFD 237

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAK I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+
Sbjct: 238 RNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFI 297

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D 
Sbjct: 298 VEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDD 356

Query: 490 FDINKLRYHKIII 502
           FDI KLRYHKI++
Sbjct: 357 FDIEKLRYHKILL 369


>gi|188090280|gb|ACD49374.1| gyrase subunit B [Xanthomonas hortorum]
 gi|188090304|gb|ACD49386.1| gyrase subunit B [Xanthomonas hortorum pv. hederae]
 gi|188090446|gb|ACD49457.1| gyrase subunit B [Xanthomonas gardneri ATCC 19865]
 gi|188090450|gb|ACD49459.1| gyrase subunit B [Xanthomonas cynarae]
 gi|188090452|gb|ACD49460.1| gyrase subunit B [Xanthomonas cynarae]
 gi|188090454|gb|ACD49461.1| gyrase subunit B [Xanthomonas cynarae]
 gi|290796572|gb|ADD64856.1| gyrase subunit B [Xanthomonas hortorum]
          Length = 288

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTGANEAIARNAHRYDPALMT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD--ILVKRI 667
             +     +      E DQ   +     + NR      + +  +  + +++   ++  R 
Sbjct: 121 ALIDLPPLDVAKLQAEGDQHPTLDKLQAVLNRGTLGTARYQLRFDPATDSTSATLVAVRK 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  +  ++        ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVALALDGLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|37931123|gb|AAP69922.1| DNA gyrase subunit beta [Aeromonas sp. 40]
          Length = 321

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 239/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P  AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGVAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|30793648|gb|AAM52886.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|30793668|gb|AAM52896.1| DNA gyrase subunit beta [Aeromonas salmonicida subsp. masoucida]
 gi|30793672|gb|AAM52898.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|30793680|gb|AAM52902.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|30793730|gb|AAM52927.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|30793744|gb|AAM52934.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|37931125|gb|AAP69923.1| DNA gyrase subunit beta [Aeromonas sp. 117P]
 gi|37931127|gb|AAP69924.1| DNA gyrase subunit beta [Aeromonas sp. 116P]
 gi|37931131|gb|AAP69926.1| DNA gyrase subunit beta [Aeromonas sp. 119P]
 gi|37931135|gb|AAP69928.1| DNA gyrase subunit beta [Aeromonas sp. 156]
 gi|37931137|gb|AAP69929.1| DNA gyrase subunit beta [Aeromonas sp. A99]
 gi|37931141|gb|AAP69931.1| DNA gyrase subunit beta [Aeromonas sp. 130]
          Length = 321

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 240/323 (74%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|167957373|ref|ZP_02544447.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate
           TM7c]
          Length = 486

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 177/404 (43%), Positives = 257/404 (63%), Gaps = 4/404 (0%)

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
              +F+Y  + + LR  ++L   V  S++D+R+ E      +++GGI+++V  L+  K+ 
Sbjct: 6   ETVNFDYKWVVNYLRHQAYLTKGVYTSVVDERTGER--KAFYFEGGIKSYVKNLNIGKEV 63

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L +    ++   ++  +++A+++ND Y E V  F NN+   DGGTHL G R+ALTR I  
Sbjct: 64  LSEDIFYVEKQIEDCMVEIAVQYNDTYVEVVKPFANNVLTPDGGTHLVGFRTALTRVIND 123

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  K+   K+ + ++ GDD REG T+V+ +K+PDP+F  QTK KL + E+R  V+  +++
Sbjct: 124 YARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPEMRRYVDQVMSE 183

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
             + +LEE+P  AK +V K   A+  R AAR ARD   RKG  +  +LP KL DCS R+ 
Sbjct: 184 YFAYYLEENPATAKKVVGKATLAARARKAARAARDNVIRKGAFEGLNLPSKLTDCSSRNR 243

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           K  ELF+VEG+SA GSAK GR    QAILPLRGK+LN ERARFDKM ++ EI +LI A+G
Sbjct: 244 KDCELFIVEGNSAAGSAKDGRDSTIQAILPLRGKVLNTERARFDKMFANAEIVSLIKAMG 303

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            GIG D FDI+ +RY KII MTDADVDGAHI TLL+TFFFR M  +I  G +Y+ KPPL+
Sbjct: 304 VGIG-DQFDISGIRYDKIIFMTDADVDGAHISTLLMTFFFRYMSEVIEAGHVYLAKPPLF 362

Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           G+++G       D    ++  + + L+E+I     +   I +N 
Sbjct: 363 GLSKGTGSNRKIDYI-YDEAALEEKLTEKINERKAAGVKIDENA 405



 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 20/157 (12%)

Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708
           SE    G +  +   +  +++G      ++        +  +   + +I E     + + 
Sbjct: 346 SEVIEAGHVYLAKPPLFGLSKGTGSNRKIDYIYD---EAALEEKLTEKINERKAAGVKID 402

Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
            N ++ K  G  +               QR+KGLGEM+ASQLWETT+NP+ R+L++V I 
Sbjct: 403 ENAERFKQAGYTAQ--------------QRFKGLGEMDASQLWETTMNPENRTLVKVNIE 448

Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSA---LD 802
           DA +AD +F++LMGD VE R+ FIQ N+       LD
Sbjct: 449 DAERADAIFTKLMGDSVELRKNFIQTNAAKVNVEDLD 485


>gi|332637208|ref|ZP_08416071.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella cibaria KACC 11862]
          Length = 671

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 158/624 (25%), Positives = 278/624 (44%), Gaps = 67/624 (10%)

Query: 24  VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83
           ++  P MY G     +   H + E +DN ID+ L   AD + +T + DGS +V DNG G+
Sbjct: 12  IRINPDMYGGSKSTPT---HALQEAVDNGIDQILIKKADHLWITFHEDGSYSVFDNGEGM 68

Query: 84  PTDLHKE---EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK 140
           P ++ +    + +    +  T  +  G + Q++   S G +G+G   V A S+     I 
Sbjct: 69  PVEVAETANGDKMPTNRMAWTVPNTSGHYTQQA-TTSIGKNGIGTKFVTATSTKTVGTIL 127

Query: 141 REGNIYEMSFI-----------NGILDNPL------------------------VVTGSA 165
           ++G  Y+  +                   L                              
Sbjct: 128 KDGKWYQDIYTLDPEVAPAFKDKSDKAAKLLSRSPLIYETKLNRNHQLPSKTLTQKLYIH 187

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           G   GTE+ F P  DI+     ++   + RL + +FLN     +LI++ + E   ++   
Sbjct: 188 GQSHGTELRFWPDPDIYDSVAIDWTAFKDRLHQQAFLNPEASFTLINEATGEE--VSYHE 245

Query: 226 KGGIEAFVSYLDRHKKPLMQS----PIRIQG-----SRDNISIDLAMRWNDGYHENVLCF 276
             G++A+V Y+    K   +          G       + I  D+A  W DG       F
Sbjct: 246 PEGLKAYVEYVFESSKEDNEKLITGIHGFSGRIETNEGEWIGADVAFAWTDGATPRQRSF 305

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N++   DGGTH+SG  + + R + +Y +K       K S+   D + G  +++S     
Sbjct: 306 VNSVATPDGGTHVSGFNAGVRRMMNNYADKLG---LTKDSIDSRDLQPGLVAIISANHTK 362

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD-ASMVRDAARRA 395
           P+++ QTK+KL + + ++ ++    +      +++  + + ++K+ L+ A++ R     +
Sbjct: 363 PQYTGQTKDKLSNVDAKTAIDKITYEQGQFEWDKYITDVEAVIKQALERAALRRKIDDLS 422

Query: 396 RDLTRRKGVLDIASLPGKLADC--SERDPKKSELFLVEGDSAGGSAKQGRSR----ENQA 449
           +     K +    S   K A      R  +++ELF+ EGDSA GS  + R        QA
Sbjct: 423 KIKLDSKDMKAKVSKKLKPAKKLRGARGVEQAELFITEGDSASGSLTRTRINGEGGMYQA 482

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           I P+RGKI+N   +  DK+ ++ E+ T+ +A+G GIG D +D +KL Y KIII +D+D D
Sbjct: 483 IFPIRGKIINALTSTSDKVFANTEVSTIFSAIGAGIG-DKYDESKLNYDKIIIASDSDSD 541

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG-ITRGKSLQYVKDEESLEDYLINQS- 567
           G +I  LL+T F +  P L+ NG +Y  + PL+       +  Y+  E   + YL     
Sbjct: 542 GDNIFALLITLFSKYTPQLLENGHVYRAQAPLFINYDEKGNTDYIYTERDQQVYLETHDP 601

Query: 568 -LSEEIELFCDSKGVISKNDLRNF 590
            L E  +   +    +++  L   
Sbjct: 602 KLVERAKGLGEVGDPMTRETLITP 625



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 740 KGLGE----MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           KGLGE    M      ET + P TR L +    D   + +L   LMG EV PRR F+ EN
Sbjct: 608 KGLGEVGDPMT----RETLITPGTRHLTQYTTNDIEASTELVDLLMGKEVAPRRAFLMEN 663

Query: 796 S 796
           +
Sbjct: 664 A 664


>gi|188090296|gb|ACD49382.1| gyrase subunit B [Xanthomonas translucens pv. cerealis]
          Length = 288

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL N ++     +    +  I+ + L   +      +  +      +D   + 
Sbjct: 61  DDNALNAYLANSAVEGAALIPATDEPPITGSALEKLLLLFASANDAVARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E DQ  +++    + NR +    + +  +  +     + ++  R 
Sbjct: 121 ALIDLPPLDVAQLEAEGDQHPSLTALQAVLNRGSLGTARYQLRFEPATEQRPATLIAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL  +   S   +  R  +  +         +        I+        +F
Sbjct: 181 HMGEELTQVLPMAVFESGELRPLREVALALNGLVRAGAQIARGNKTQSISSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|171702730|dbj|BAG16333.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-81]
          Length = 356

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 154/351 (43%), Positives = 223/351 (63%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSF 201
           G +Y+  +  G    P+   G   +  GT VTF P + IF+   +++YDTL  RLRELSF
Sbjct: 1   GKVYQQEYEKGKSLYPVNQIG-TTDKRGTIVTFKPDATIFTHTLEYSYDTLAARLRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR           T   K G++ F+ +LD +++P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKRHLADDGSQPVETFHSKEGLKEFIKFLDGNREPIISHVISMENEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S   +K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +AK 
Sbjct: 180 AGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKT 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP+K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
            AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 300 IAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTE 350


>gi|30793658|gb|AAM52891.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|30793686|gb|AAM52905.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
 gi|30793698|gb|AAM52911.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|30793708|gb|AAM52916.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|30793716|gb|AAM52920.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|30793718|gb|AAM52921.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|92919006|gb|ABE96850.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 321

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 180/323 (55%), Positives = 236/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R          Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|171702746|dbj|BAG16341.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-118]
          Length = 356

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 152/351 (43%), Positives = 218/351 (62%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G +YE  +  G    P+   G      GT VTF P   IF+    ++YDTL  R+RELSF
Sbjct: 1   GKVYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+  DKR                 G++ ++ YLD +++P++   I +   +  I
Sbjct: 60  LNKGITITFTDKRELDKDGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDSEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  +
Sbjct: 120 PVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D + A+LEE+P +A+I
Sbjct: 180 SGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G +
Sbjct: 300 TAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTE 350


>gi|188090260|gb|ACD49364.1| gyrase subunit B [Xanthomonas cassavae]
          Length = 288

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++   + +    +  I+   L   +      +  I      +D   + 
Sbjct: 61  DDAALNAYLASSAVEGAVLIPAADEPPITGEALEKLLLLFAGANDAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D   ++     + NR      + +  +  + +N  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPSLDALQAVLNRGTLGTARYQLRFDPATDNTAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  +  +         ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVALALHGLVREGAQIVRGNKSHPITSFGQAQAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|161339286|gb|ABX64394.1| GyrB [Gordonia amicalis]
          Length = 393

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 159/395 (40%), Positives = 227/395 (57%), Gaps = 37/395 (9%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVG+SVVNALS+ ++L I R+G+ +  ++        L   G A   TGT V F P  +
Sbjct: 1   HGVGISVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GDATRKTGTTVRFWPDPE 58

Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------------------- 216
           IF+    FN +T+  RL+E++FLN  + I+L D+R                         
Sbjct: 59  IFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDEDAPATDVAEVV 118

Query: 217 -----------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
                      +P+  T  Y  G+  ++ +L+R K+ +  + I      +   +++AM+W
Sbjct: 119 LTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGHEVEIAMQW 178

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + GDD REG
Sbjct: 179 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREG 238

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAKII+KK  D+
Sbjct: 239 LAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKKAADS 298

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR  
Sbjct: 299 AQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDS 358

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
             QAILPLRGKI+NVE+AR D++L + E+ ++ITA
Sbjct: 359 MYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 393


>gi|30793726|gb|AAM52925.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 321

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 184/323 (56%), Positives = 242/323 (74%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IFS   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|295148899|gb|ADF80935.1| DNA gyrase subunit B [Vibrio sp. MA12]
 gi|295148901|gb|ADF80936.1| DNA gyrase subunit B [Vibrio sp. MA17]
          Length = 275

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 143/277 (51%), Positives = 200/277 (72%), Gaps = 3/277 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVG+SVVNALS  ++L I R G I+  ++ +G+ D PL   G    D+GT+
Sbjct: 1   SYKVSGGLHGVGISVVNALSEKVELTIHRNGKIHTQTYHHGVPDEPLKEIGDTE-DSGTK 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F PS++ F+  +F Y+ L  RLRELSFLNS V I L D+R  + ++    Y GGI+AF
Sbjct: 60  VRFWPSAETFTNIEFVYEILAKRLRELSFLNSGVSIHLRDER-EDNKQNHYMYDGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V++L+R+K P+ +        R++ I++++A++WNDG+ E++ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VTHLNRNKTPIHEKVFHFVQEREDGITVEVALQWNDGFQESIFCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + SY++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S VE+ + + L  +L EHP EAK I  K++DA+  
Sbjct: 239 VKSAVETTMGEKLGDYLAEHPNEAKTICTKIIDAARA 275


>gi|188090286|gb|ACD49377.1| gyrase subunit B [Xanthomonas hortorum pv. taraxaci]
 gi|188090320|gb|ACD49394.1| gyrase subunit B [Xanthomonas hortorum pv. pelargonii]
          Length = 288

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPASDEPPITGEALEKLLMLFTGANEAIARNAHRYDPALMT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD--ILVKRI 667
             +     +      E DQ   +     + NR      + +  +  + +++   ++  R 
Sbjct: 121 ALIDLPPLDVAKLQAEGDQHPTLDKLQAVLNRGTLGTARYQLRFDPATDSTSATLVAVRK 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  +  ++        ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVALALDGLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|37651488|ref|NP_932362.1| gp60plus39 [Aeromonas phage 44RR2.8t]
 gi|34732788|gb|AAQ81326.1| topoisomerase II large subunit [Aeromonas phage 44RR2.8t]
          Length = 607

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 131/579 (22%), Positives = 244/579 (42%), Gaps = 65/579 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT----------------DGESGLHHMIYEVLDNAIDE 55
           +D  ++L   + V  RP+MY+G                      GL  +I E++DN++DE
Sbjct: 2   SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDE 61

Query: 56  SLE---GYADIITVTLNM-DGSCTVSDNGRGIPTDLHKEEG--ISAAEVIMTRLHAGGKF 109
            +     +A+ I +  ++ +GS TV DNGRGIP  + +     +       T+  AG  F
Sbjct: 62  GIRTDFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPVAAWTQTMAGSNF 121

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY-EMSFINGILDNPLVVTGSAGND 168
           +  + +VS G++GVG S+ N  S         +G  +  ++   G  +         G  
Sbjct: 122 DDTN-RVSMGMNGVGSSLTNFFSKKFIGETC-DGKNFLTVTCSEGASNIDWET--KPGKI 177

Query: 169 TGTEVTFLPSSDIFS---VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            GT V F+P    F    +     D +  R+  LS +   ++ ++  + +          
Sbjct: 178 KGTSVYFIPDEKHFEGRTIDQQIIDIISDRITALSVVFPQIKFTINGQIASMKFADYAKM 237

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            G                    + ++  R +I+I  +    +G+ +  + + N +  K+G
Sbjct: 238 FG-----------------DESLIVESDRFSIAICNS---PEGFRQ--VSYVNGLNIKNG 275

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTK 344
           G+H+  L   ++ ++   ++K       K  +     +E  T V+ ++ M + RF SQTK
Sbjct: 276 GSHIDYLVDGISEELMPAIKKK-----HKIEISKARVKECLTMVVVVRGMSNLRFDSQTK 330

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           E+L +      V+S   D     L +  +    I++ +++A++ R  A     +T+ +  
Sbjct: 331 ERLTNP--AGEVKSHF-DLDFKKLSKQIMNTDAILQPIIEAALARHLAAEKAAMTKAQKA 387

Query: 405 LDIASLPGKLADCSERDPK-KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
               +    +          ++ LFL EG+SA G   + +         LRGK++N    
Sbjct: 388 AAKTNCAKHIKAGEWGRNDIETTLFLTEGESAIGYLLKVKDENLHGGYALRGKVMNTWGM 447

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA-HIRTLLLTFFF 522
           +   +L + E+  +    G  +  +  DI++ +Y  I IMTDAD DG   I   LL FF 
Sbjct: 448 KGSDVLKNNELSDICAITGLDL-ANPDDISQRKYKNIAIMTDADPDGQGSIYPCLLAFFA 506

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           R  P L   G +  +K P+  + +GK+ ++       E 
Sbjct: 507 R-WPKLFDEGSVRFVKTPVVILNKGKNTKWFYTLTEFEK 544


>gi|62084066|dbj|BAD91440.1| DNA gyrase subunit B [Streptococcus agalactiae]
 gi|110224948|dbj|BAE97463.1| DNA gyrase subunit B [Streptococcus agalactiae]
          Length = 300

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 123/300 (41%), Positives = 195/300 (65%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +++ + G ++   +  G++ N L + G   + +G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR  +  E    Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +++ +K+ + ++PI   G  D IS+++AM++  GY E V+ F NNI   +GGTH 
Sbjct: 120 GSYVEFINENKEVIFENPIYTDGELDGISVEVAMQYTTGYQETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  + +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|30793670|gb|AAM52897.1| DNA gyrase subunit beta [Aeromonas salmonicida subsp. achromogenes]
          Length = 321

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 181/323 (56%), Positives = 239/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+    +GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCXEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|62084068|dbj|BAD91441.1| DNA gyrase subunit B [Streptococcus agalactiae]
 gi|62084070|dbj|BAD91442.1| DNA gyrase subunit B [Streptococcus agalactiae]
          Length = 300

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 196/300 (65%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +++ + G ++   +  G++ N L + G   + +G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR  +  E    Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +++ +K+ + ++PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 GSYVEFINENKEVIFENPIYTDGELDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  + +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|188090400|gb|ACD49434.1| gyrase subunit B [Xanthomonas arboricola pv. populi]
          Length = 288

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           +RYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   VRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSINNSD--ILVKRI 667
             +     + ++ Q              + NR      + +  +  + +++   ++  R 
Sbjct: 121 ALIDLPPLDVDTLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDSASASLVAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I +A  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEEAVAADQ 288


>gi|62084086|dbj|BAD91450.1| DNA gyrase subunit B [Streptococcus porcinus]
          Length = 300

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 129/300 (43%), Positives = 193/300 (64%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   F  G++ + L + G     TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFRRGVVVDDLKIIGETE-LTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    FN+D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETVIFNFDKLAKRIQELAFLNRGLRISISDKRPGMQQEKDFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V YL+  K  ++++PI   G  D I++++AM++  GYHENV+ F NNI   +GGTH 
Sbjct: 120 GSYVEYLNEKKDVIIETPIYTDGEMDGIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++    +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFHRFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|110224978|dbj|BAE97478.1| DNA gyrase subunit B [Streptococcus gordonii]
          Length = 300

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 193/300 (64%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +++ + G I+   +  G +   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGQIHFQEYTRGQVVADLKVIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+   +F+++ L  R++EL+FLN  + IS+ DKR    +     Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLNKRIQELAFLNRGLSISITDKRDGMEQSKDYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K+ +  +PI   G  ++I++++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 ASYVQYINENKEVIFDNPIYTDGEMEDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|30793742|gb|AAM52933.1| DNA gyrase subunit beta [Aeromonas popoffii]
          Length = 321

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 181/323 (56%), Positives = 239/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+   + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDEP--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSIEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|3985990|dbj|BAA34871.1| topoisomerase IV subunit E [Nitrosospira sp. NpAV]
          Length = 395

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 139/399 (34%), Positives = 203/399 (50%), Gaps = 11/399 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
            K+Y  SGGLHGVGVSVVNALS  L++++ R+  +Y M F  GI    L   GS  N  G
Sbjct: 1   SKAYNTSGGLHGVGVSVVNALSETLEVQVARDQQLYRMVFSRGIPQTKLEKLGSIMNRRG 60

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFY 225
           T+  F P   IF     F    L    R  ++L   V+I             P E    +
Sbjct: 61  TKTRFKPDEKIFGKGAAFKPARLMKMARSKAYLFGGVEIRWKCAPELIKDDTPAEAVFHF 120

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIR--IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283
            GG+  +++     +  + +      ++    + S++ A+ W          + N IP  
Sbjct: 121 PGGLADYLTASIDGRTRVTKDIFSGRVEKEGGHGSVEWAVAWISDDDGFSSSYCNTIPTA 180

Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
           +GGTH +GLR AL + + +Y E +       + +  +D      S+LS+ + +P F  QT
Sbjct: 181 EGGTHENGLRQALYKALRAYGELTGNK--KAQQITSEDVMGTAASMLSVFVREPEFQGQT 238

Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           K+KL ++E   +VE+ V D    WL + P +A  +++  +D S  R   RR ++   R+ 
Sbjct: 239 KDKLATAEATKIVETAVRDAFDHWLADSPQQATKLLEWTVDQSEERLKRRREKE-IGRQS 297

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                 LPGKLADCS +    +E+F+VEGDSAGGSAK  R RE QA+LPLRGKILNV  A
Sbjct: 298 ATRKLRLPGKLADCSIQQAAGTEIFIVEGDSAGGSAKSARDRETQAVLPLRGKILNVANA 357

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
              K+  +Q +  LI ALG G     +    LRY ++II
Sbjct: 358 SSAKLSQNQLLADLIQALGAGT-STKYRDEDLRYERVII 395


>gi|110225018|dbj|BAE97498.1| DNA gyrase subunit B [Streptococcus salivarius]
 gi|110225024|dbj|BAE97501.1| DNA gyrase subunit B [Streptococcus vestibularis]
          Length = 300

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 187/300 (62%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +++ + G+I+   +  G++   L V G      G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVADLAVIGETE-KHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF     F++  L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI
Sbjct: 60  TTVHFTPDPEIFQETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLEQEKHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  +   PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 TSYVKYINENKDVIFDEPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  ++   K+   ++ GDD REG T+++S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++ LS +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|30793736|gb|AAM52930.1| DNA gyrase subunit beta [Aeromonas encheleia]
          Length = 321

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 180/323 (55%), Positives = 235/323 (72%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R          Y+GGI+AFV Y+  +K P+          +D I ++
Sbjct: 61  FLNSGVSIRLEDERDGREMH--FCYEGGIKAFVEYVCENKTPIYPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + LS +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEFLLENPSDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|21218063|dbj|BAB96550.1| DNA gyrase subunit B [Mycobacterium sp. 9912]
          Length = 391

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 157/385 (40%), Positives = 225/385 (58%), Gaps = 32/385 (8%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS+ L++ IKR+G  +   +        L   G A   TGT + F    DIF   +++++
Sbjct: 1   LSTRLEVDIKRDGYEWSQFYDRAQP-GTLKQ-GEATKKTGTTIRFWADPDIFETTEYDFE 58

Query: 191 TLQHRLRELSFLNSSVQISLIDKR------------------------------SPEPRE 220
           T+  RL+E++FLN  + I+L D+R                                + + 
Sbjct: 59  TVARRLQEMAFLNKGLTINLTDERVTPDEVVDDVVSDTAEAPKSAQEKAAESTAPHKVKS 118

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
            T  Y GG+  FV +++R K P+ QS +  +G      +++AM+WN GY E+V  F N I
Sbjct: 119 RTFHYPGGLVDFVKHINRTKSPIQQSIVDFEGKGSGHEVEIAMQWNGGYSESVHTFANTI 178

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+++ +P+F 
Sbjct: 179 NTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAVISVRVAEPQFE 238

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400
            QTK KL ++EV+S V+   N+ L+ W E +P EAK IV K + ++  R AAR+AR+L R
Sbjct: 239 GQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTIVNKAVSSAQARLAARKARELVR 298

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NV
Sbjct: 299 RKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINV 358

Query: 461 ERARFDKMLSSQEIGTLITALGTGI 485
           E+AR D++L + E+  +ITALGTGI
Sbjct: 359 EKARIDRVLKNTEVQAIITALGTGI 383


>gi|164456637|dbj|BAF97811.1| gyrase B subunit [Vibrio agarivorans]
          Length = 275

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 148/277 (53%), Positives = 198/277 (71%), Gaps = 3/277 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLGVIGDT-DKTGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS + FS  +F+YD L  RLRELSFLNS V I L D+R  E +     Y+GGI+AF
Sbjct: 60  IRFWPSEETFSNTEFHYDILAKRLRELSFLNSGVSIKLRDER-EEDKGDHFMYEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VEHLNTNKTPIIEKVFHFNSEREDGIAVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           V+S VES + + LS +L EHP EAK +  K++DA+  
Sbjct: 239 VKSAVESAMGEKLSEFLIEHPAEAKTVCTKIIDAARA 275


>gi|110224992|dbj|BAE97485.1| DNA gyrase subunit B [Streptococcus mutans]
          Length = 300

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 130/300 (43%), Positives = 198/300 (66%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   +  G++   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYHRGVVAEDLKVIGDT-DITG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKRS + R+    Y+GGI
Sbjct: 60  TIVHFTPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISITDKRSGQERKEEFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +++ +K+ +   PI   GS D IS+++AM++  G+HEN++ F NNI   +GGTH 
Sbjct: 120 VSYVEFINENKEVIFDKPIYTDGSLDGISVEVAMQYTTGFHENIMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ GDD REG T+++S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENEDNLNGDDVREGLTAIISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D L+ +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDALNRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|171702758|dbj|BAG16347.1| DNA gyrase subunit B [Flavobacterium sp. GMY-13]
          Length = 356

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 152/349 (43%), Positives = 218/349 (62%), Gaps = 6/349 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G IYE  +  G    P+   G      GT  TF P + IF+    F+YDTL  R+RELSF
Sbjct: 1   GKIYEQEYERGKSLYPVKQIGETE-KRGTRQTFYPDNTIFTQTTEFSYDTLSARMRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+  DKR      E R        G++ ++ YLD +++P++   I +   +  I
Sbjct: 60  LNKGITITFTDKREVNEKGEFRSEVFHSTEGLKEYIRYLDGNREPIVSHVISMDHDKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G RS LTR +  Y + S    K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +A++
Sbjct: 180 AGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPNDARV 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I++KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP + E++LVEGDSAGG
Sbjct: 240 IIQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G
Sbjct: 300 TAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVG 348


>gi|110224988|dbj|BAE97483.1| DNA gyrase subunit B [Streptococcus macacae]
          Length = 300

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 125/300 (41%), Positives = 195/300 (65%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G +Y   +  G++ N L V     + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGKVYFQEYRRGVVVNDLKVIDET-DITG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  DIF+    F++D L  R++EL+FLN  ++IS+ DKR  + +     Y+GGI
Sbjct: 60  TTVHFTPDPDIFTETIEFDFDKLAKRIQELAFLNKGLKISITDKRKDKEQNKEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +++ +K+ + ++PI   G  + I++++AM++  GYHE ++ F NNI   +GGTH 
Sbjct: 120 VSYVDFINENKEVIFENPIYTDGELEGIAVEVAMQYTTGYHEIIMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENDDNLSGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++ L+ +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEALNRFLLENPPIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|285013604|gb|ADC32798.1| gyrase subunit B [Xanthomonas hortorum pv. vitians]
          Length = 287

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD
Sbjct: 1   RYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKD 60

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           + +L  YL + ++     +    +  I+   L   +      ++ I      +D   +  
Sbjct: 61  DAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTGANEAIARNAHRYDPALMTA 120

Query: 616 AVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD--ILVKRIA 668
            +     +      E DQ   +     + NR      + +  +  + +++   ++  R  
Sbjct: 121 LIDLPPLDVAKLQAEGDQHPTLDKLQAVLNRGTLGTARYQLRFDPATDSTSATLVAVRKH 180

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            G +   VL   +  S   +  R  +  ++        ++       IT        +  
Sbjct: 181 MGEEFTQVLPMGAFESGELRPLREVALALDGLVREGAQIVRGNKTHPITSFAQAHAWLLE 240

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
             +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 287


>gi|244537698|emb|CAX15422.1| gyrase B [Polymorphospora rubra]
          Length = 349

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 150/351 (42%), Positives = 221/351 (62%), Gaps = 7/351 (1%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++  ++ N +  +PL   G   + TG+ V+F P   +F   DF ++T+  RL
Sbjct: 2   VEIHKSGHVWRQTYSNSVP-SPLEK-GETTDRTGSSVSFWPDPGVFETVDFAFETIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           +E++FLN  + I L D+R  E     RE+T  Y+GGI  FV +L+  K P+ +S I    
Sbjct: 60  QEMAFLNRGLTIRLRDERVQEEDGNAREVTFLYRGGIADFVRHLNNTKSPIHKSVIEFGA 119

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
             + +++++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        K
Sbjct: 120 EEEGMAVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTTVVNRYGADKK-LLK 178

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +P
Sbjct: 179 GDEKLTGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRNP 238

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            E K I+ K   AS  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEG
Sbjct: 239 AEVKQIITKATQASRARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEG 298

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           DSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGT
Sbjct: 299 DSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 349


>gi|188090246|gb|ACD49357.1| gyrase subunit B [Xanthomonas hyacinthi]
 gi|188090248|gb|ACD49358.1| gyrase subunit B [Xanthomonas hyacinthi]
 gi|188090250|gb|ACD49359.1| gyrase subunit B [Xanthomonas hyacinthi]
 gi|188090252|gb|ACD49360.1| gyrase subunit B [Xanthomonas hyacinthi]
          Length = 288

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 139/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL N ++     +    +  I+ + L   +      +  +      +D   + 
Sbjct: 61  DDNALNAYLANSAVEGAALIPASDEPPITGSALEKLLLLFASANDAVARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHG--SINNSDILVKRI 667
             +     +      E DQ  ++     + NR +    +    +        + ++  R 
Sbjct: 121 ALIDLPPLDVAQLEAEGDQHPSLDALQAVLNRGSLGTARYLLRFEPGSEQRPATLIAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL  +   S   +  R     +         ++       +         +F
Sbjct: 181 HMGEELTQVLPMAVFESGELRPLREVGLALNGLVRDGAQIVRGNKTQAVASFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|171702764|dbj|BAG16350.1| DNA gyrase subunit B [Flavobacterium sp. GMY-17]
          Length = 356

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 152/349 (43%), Positives = 218/349 (62%), Gaps = 6/349 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G IYE  +  G    P+   G      GT  TF P + IF+    F+YDTL  R+RELSF
Sbjct: 1   GKIYEQEYERGKSLYPVKQIGETE-KRGTRQTFYPDNTIFTQTTEFSYDTLSARMRELSF 59

Query: 202 LNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+  DKR      E R        G++ ++ YLD +++P++   I +   +  I
Sbjct: 60  LNKGITITFTDKREVDEKGEFRSEVFHSTEGLKEYIRYLDGNREPIVSHVISMDHDKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G RS LTR +  Y + S    K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +A++
Sbjct: 180 AGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPNDARV 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I++KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP + E++LVEGDSAGG
Sbjct: 240 IIQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  +G
Sbjct: 300 TAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVG 348


>gi|109820269|gb|ABG46471.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820275|gb|ABG46474.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820287|gb|ABG46480.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820355|gb|ABG46514.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 179/287 (62%), Positives = 225/287 (78%)

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 4   LRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSE 63

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD   LP
Sbjct: 64  VRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLP 123

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 124 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLSS 183

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           QE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I  
Sbjct: 184 QEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIER 243

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   + +  D 
Sbjct: 244 GHVYIAQPPLYKIKHGKEERYIKDDNEMAAYLMRQALDTALLVRADG 290


>gi|109820265|gb|ABG46469.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820289|gb|ABG46481.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820291|gb|ABG46482.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820295|gb|ABG46484.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820297|gb|ABG46485.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820301|gb|ABG46487.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820315|gb|ABG46494.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820335|gb|ABG46504.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820341|gb|ABG46507.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820347|gb|ABG46510.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820349|gb|ABG46511.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820351|gb|ABG46512.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 180/287 (62%), Positives = 225/287 (78%)

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 4   LRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSE 63

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD   LP
Sbjct: 64  VRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLP 123

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 124 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLSS 183

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           QE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I  
Sbjct: 184 QEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIER 243

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   I +  D 
Sbjct: 244 GHVYIAQPPLYKIKHGKEERYIKDDNEMAAYLMRQALDTAILVRADG 290


>gi|109820249|gb|ABG46461.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820329|gb|ABG46501.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 180/287 (62%), Positives = 225/287 (78%)

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 4   LRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSE 63

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD   LP
Sbjct: 64  VRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLP 123

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 124 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLSS 183

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           QE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I  
Sbjct: 184 QEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIER 243

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   I +  D 
Sbjct: 244 GHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAILVRADG 290


>gi|37931151|gb|AAP69936.1| DNA gyrase subunit beta [Aeromonas sp. 26]
          Length = 321

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 239/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV + VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVNTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|109820353|gb|ABG46513.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 181/290 (62%), Positives = 228/290 (78%)

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLV
Sbjct: 1   MTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLV 60

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD  
Sbjct: 61  SSEVRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGM 120

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKM
Sbjct: 121 GLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKM 180

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           LSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +
Sbjct: 181 LSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEI 240

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           I  G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   I +  D 
Sbjct: 241 IERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAILVRADG 290


>gi|164456635|dbj|BAF97810.1| gyrase B subunit [Vibrio aestuarianus]
          Length = 278

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 144/280 (51%), Positives = 198/280 (70%), Gaps = 4/280 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  ++L IKR+G I++  + +G+   PL V G    +TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQAPLAVIGKTE-ETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS + F+  +F+Y+ L  RLRELSFLNS V I L D+R  E +     ++GGI 
Sbjct: 60  TRIRFWPSEETFTNIEFHYEILAKRLRELSFLNSGVSIKLTDER-EEDKSDHFMFEGGIR 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           AFV +L+R+K P+ Q           D I++++AM+WNDG+ E V CFTNNIPQ+DGGTH
Sbjct: 119 AFVEHLNRNKTPIHQKIFYFDHTREEDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           SSEV+S VES +++ LS +L E+P EAKI+  K++DA+  
Sbjct: 239 SSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARA 278


>gi|310722198|ref|YP_003969022.1| DNA topoisomerase II large subunit [Aeromonas phage phiAS4]
 gi|306021041|gb|ADM79576.1| DNA topoisomerase II large subunit [Aeromonas phage phiAS4]
          Length = 607

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 132/613 (21%), Positives = 245/613 (39%), Gaps = 71/613 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT----------------DGESGLHHMIYEVLDNAIDE 55
           +D  ++L   + V  RP+MY+G                      GL  +I E++DN++DE
Sbjct: 2   SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKYQSVSYVPGLVKIIDEIIDNSVDE 61

Query: 56  SLE---GYADIITVTLNM-DGSCTVSDNGRGIPTDLH--KEEGISAAEVIMTRLHAGGKF 109
            +     +A+ I +  ++ +GS TV+DNGRGIP  L    +  +       T+  AG  F
Sbjct: 62  GIRTDFKFANKIDIRFDLLEGSVTVADNGRGIPQSLVNTPDGEMPKPVAAWTQTMAGSNF 121

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY-EMSFINGILDNPLVVTGSAGND 168
           +  + +VS G++GVG S+ N  S         +G  +  ++  +G            G  
Sbjct: 122 DDTN-RVSMGMNGVGSSLTNFFSKTFIGETC-DGKNFLTVTCSDGASQVNWET--KPGKI 177

Query: 169 TGTEVTFLPSSDIFS---VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            GT V F+P    F    +     D +  R+  LS +   ++ ++  + +          
Sbjct: 178 KGTSVYFIPDEKHFEGKTIDQQIVDIISDRITALSVVFPKIKFTINGEVASMKFAEYAKM 237

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            G     +   +                                    + + N +  K+G
Sbjct: 238 FGDESLILENDNFSIAICNSPEGF----------------------RQVSYVNGLNIKNG 275

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTK 344
           G+H+  L   +  ++   +++       K  +     +E  T ++ ++ M + RF SQTK
Sbjct: 276 GSHIDYLIDGIADELIPSIKRK-----YKIEISKARIKECLTMIVVVRGMSNLRFDSQTK 330

Query: 345 EKLVSS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD-AARRARDLTRR 401
           E+L +   EV+S +E          L +  +    I+  +++A++ R  AA +A     +
Sbjct: 331 ERLTNPLGEVKSHIELDFKK-----LGKQIMNNDAILMPIIEAALARHLAAEKAALTKAQ 385

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           K            A       K++ LFL EGDSA G     R  E      LRGK++N  
Sbjct: 386 KAAAKTKVAKHIKAGSWGDISKETTLFLTEGDSAIGYLLSVRDSELHGGYALRGKVMNTW 445

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA-HIRTLLLTF 520
             +   +L ++E+  +   +G  +  +  D+   +Y  + IMTDAD DG   I   LL F
Sbjct: 446 GMKGSDVLKNRELADICAIMGLDL-ANPDDVENRKYKNVAIMTDADPDGQGSIYPCLLAF 504

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580
           F R  P L   G +  +K P+  +++GK  ++       +     +        +    G
Sbjct: 505 FSR-WPKLYDLGCVRFVKTPVVILSKGKQTKWFYTITEFDAQ--KEKYKGWELRYIKGLG 561

Query: 581 VISKNDLRNFIDD 593
            + +++    +++
Sbjct: 562 SLREHEYSEVVNN 574


>gi|109820226|gb|ABG46460.1| DNA gyrase subunit B [Ralstonia mannitolilytica]
          Length = 291

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 181/290 (62%), Positives = 228/290 (78%)

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           ++GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLV
Sbjct: 1   MTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLV 60

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD  
Sbjct: 61  SSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGM 120

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKM
Sbjct: 121 GLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKM 180

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           LSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +
Sbjct: 181 LSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEI 240

Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           I  G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   I +  D 
Sbjct: 241 IERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYLMRQALDTAILVRADG 290


>gi|327343615|dbj|BAK09552.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 2]
          Length = 321

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 155/324 (47%), Positives = 223/324 (68%), Gaps = 4/324 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF++ SYKVSGGLHGVG+SVVNALS  L+L IKR+G IY   +  G+    L +     
Sbjct: 1   GKFDEVSYKVSGGLHGVGISVVNALSQKLELIIKRQGKIYRQLYNTGVPQTRLEIISET- 59

Query: 167 NDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           N TGT + F P+  IF    +F YD L  R+REL+FLN  + IS+ D R       +   
Sbjct: 60  NQTGTYIRFWPNPIIFQKNIEFKYDILVKRIRELAFLNPGLSISIQDNRI--NIHHSFKE 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI+AFV++L ++K  +  +       +D IS+++A+ W + +  N+ CFTNNIPQ+DG
Sbjct: 118 DGGIKAFVAFLSKNKILIHPNIFYFAAEKDKISVEIALHWINNFQNNIYCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHLSG RSA+TR I +Y+++   +KK K ++IGDD REG  +++SIK  +P+FSSQTK+
Sbjct: 178 GTHLSGFRSAITRTINTYIDREGYNKKSKVNIIGDDTREGIVAIVSIKAHNPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSE++S VE+ +N+    +L EHP +AK+IV K++ A+  R+AAR+ R++TR+KG L
Sbjct: 238 KLVSSEIKSAVETLMNEYFIQYLLEHPQDAKLIVGKIISAARTREAARKVREITRKKGTL 297

Query: 406 DIASLPGKLADCSERDPKKSELFL 429
           D++ L GKLADC E++P  +EL+L
Sbjct: 298 DLSILSGKLADCQEKNPILNELYL 321


>gi|30793652|gb|AAM52888.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 321

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 181/323 (56%), Positives = 239/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IFS   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+G I+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGAIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           + M+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VPMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|30793646|gb|AAM52885.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|37931129|gb|AAP69925.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|37931139|gb|AAP69930.1| DNA gyrase subunit beta [Aeromonas sp. 440]
 gi|37931143|gb|AAP69932.1| DNA gyrase subunit beta [Aeromonas sp. 361c]
 gi|37931145|gb|AAP69933.1| DNA gyrase subunit beta [Aeromonas sp. 108F]
          Length = 321

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 239/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV + VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVNTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|330367267|dbj|BAK19428.1| DNA gyrase subunit B [Helicobacter acinonychis]
          Length = 356

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 155/360 (43%), Positives = 228/360 (63%), Gaps = 6/360 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--DTGTEVTFLPSSDI 181
           GVSVVNALS  L + IK+EG IY   F  GI  + L + G   N  ++GT + F P   +
Sbjct: 1   GVSVVNALSKRLIMTIKKEGRIYRQEFEKGIPISELEIIGKTKNAKESGTTIEFFPDGSV 60

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
             V +F  + LQ R +E+++LN  ++I+  ++++    + T FY+ G++ FV    + + 
Sbjct: 61  MEVVEFQANILQKRFKEMAYLNDGLKIAFKEEKT--QLQETYFYEDGLKQFVKDSTKKEL 118

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
                  +      + SI++A+ + D Y+EN L F NNI   +GGTH +G +  L++ I 
Sbjct: 119 LTSVISFKSMDGETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAIL 178

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y++ +   K  +   I +D +EG  +++S+KM +P F  QTK KL SS VR++V   V 
Sbjct: 179 QYIDNN--IKTKESRPISEDIKEGLVAIVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVY 236

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D +  +LEE+P EAKII  KVL A+  R+A+++AR+LTR+K  L + +LPGKLADC  +D
Sbjct: 237 DKIHQFLEENPNEAKIIANKVLLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKD 296

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P +SE+FLVEGDSAGGSAKQGR R  QAILPL+GKILNVE++   K+L S+EI  +ITA 
Sbjct: 297 PLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAF 356


>gi|322875016|gb|ADX20831.1| DNA gyrase subunit B [Legionella anisa]
          Length = 208

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 154/210 (73%), Gaps = 3/210 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L +
Sbjct: 1   GRGIPVDIHKEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTV 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G I+E  + NG+ D P+  TG A   TGT++ F PS++ FS  +F+YD L  RLREL
Sbjct: 61  RRHGKIHEQHYRNGVPDAPMAETGDAP-TTGTQIWFKPSAETFSNIEFHYDILAKRLREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           S+LNS V I L D+RS   R+ T  Y+GGI AFV +L+++K  ++ +   +   +DNI +
Sbjct: 120 SYLNSGVCIHLFDERS--QRQDTFHYEGGITAFVEHLNKNKNVIIPTVFSMTAEKDNIVV 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +L+M+WND Y E + CFTNNIPQ+DGGTH+
Sbjct: 178 ELSMQWNDSYQETLYCFTNNIPQRDGGTHM 207


>gi|30793702|gb|AAM52913.1| DNA gyrase subunit beta [Aeromonas popoffii]
 gi|30793706|gb|AAM52915.1| DNA gyrase subunit beta [Aeromonas popoffii]
          Length = 321

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 240/323 (74%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSIEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|58465061|gb|AAW78426.1| DNA topoisomerase II beta subunit [Shewanella sediminis]
          Length = 336

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 187/338 (55%), Positives = 252/338 (74%), Gaps = 4/338 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           V ALS  L+L I+R+G +YE  + +G  D P+   G A  +TGTE+ F PS+D F+   F
Sbjct: 1   VYALSHKLQLTIRRDGKLYEQFYTHGEPDEPIKAIGDAT-NTGTEIRFWPSTDTFTDVLF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++D L  R+RELSFLNS V + L+D+R  + R+    Y GGI AFV YL+ +K P+ +  
Sbjct: 60  HFDILAKRVRELSFLNSGVGVRLVDER--DNRDEFFKYDGGISAFVDYLNVNKTPVNKEV 117

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+E+
Sbjct: 118 FHFIQERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNTYMER 177

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              +KK K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L  
Sbjct: 178 EGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGD 237

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE
Sbjct: 238 YLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSE 297

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +++VEGDSAGGSAKQGR+R+NQAILPL+GK LNVE+AR
Sbjct: 298 IYIVEGDSAGGSAKQGRNRKNQAILPLKGKXLNVEKAR 335


>gi|34420928|gb|AAQ67709.1| DNA gyrase subunit beta [Aeromonas sp. J4N-98]
          Length = 321

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 240/323 (74%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPIIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|226294840|gb|EEH50260.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
          Length = 1760

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 115/583 (19%), Positives = 211/583 (36%), Gaps = 19/583 (3%)

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIY 146
           K+E +   E+I   L     +N    KV+GG +G G  + N  S+   +     R+   Y
Sbjct: 303 KKEKLYIPELIFGHLLTSSNYNDMQQKVTGGRNGYGAKLCNIFSTEFTIETADSRQNKKY 362

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           + ++ N +                T+VTF P    F ++  + D      R +  +  + 
Sbjct: 363 KQTWTNNMSKMGKAKITDCKGQDYTKVTFTPDFKKFGMEGVDDDFEALVKRRVYDMAGTC 422

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           ++ ++                 +       +R ++   +    I     +   ++    +
Sbjct: 423 KV-IVKLNGSRIPVRNFKQYMAMYTNAIKKERGEEAA-KDKTEILLDNPDPRWEVGFAVS 480

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           DG  + V  F N+I    GG+H++ +   +  ++   V+K   +     S+     R   
Sbjct: 481 DGSFQQV-SFVNSIATTSGGSHVNAVADQICNRLAETVKKRNKTG---ASLKPAQIRNHI 536

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
              ++ ++ +P F+SQTKE+L +   +   +  +++     + +  +   I+      A 
Sbjct: 537 FVFVNSQIVNPAFTSQTKEQLTTKPSQFGSKIVLSEEFLKKVIKTQVMENIMHFAEKKAD 596

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS-- 444
            +   +   R        L  A+  G       ++     L L EGDSA G A  GR+  
Sbjct: 597 QILKKSDGNRRSRMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAIV 650

Query: 445 -RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
             +   + PLRGK+LNV  A  D++  + EI  +   LG    ++  D   LRY  ++IM
Sbjct: 651 GPDLFGVFPLRGKMLNVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIM 710

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDY 562
           TD D DG+HI+ LL+ F     PSL+      I    P+  + +G     +  +      
Sbjct: 711 TDQDHDGSHIKGLLINFLQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPIISKSFFTMQ 770

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                           K            D  +    L K     H     E  +I   F
Sbjct: 771 EYETWKEIHGHDRRWEKKYYKGLGTSTTEDAEIYFQDLDKHLKQFHVMQDNEAQLIDLAF 830

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
           + +   E       +            E ++   IN   IL  
Sbjct: 831 SKKKADER-KEWLRQFKPGTFLDHTTEEITYTDFINKELILFS 872


>gi|295668785|ref|XP_002794941.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
 gi|226285634|gb|EEH41200.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
          Length = 1582

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 115/583 (19%), Positives = 211/583 (36%), Gaps = 19/583 (3%)

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK--REGNIY 146
           K+E +   E+I   L     +N    KV+GG +G G  + N  S+   +     R+   Y
Sbjct: 126 KKEKLYIPELIFGHLLTSSNYNDMQQKVTGGRNGYGAKLCNIFSTEFTIETADSRQNKKY 185

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           + ++ N +                T+VTF P    F ++  + D      R +  +  + 
Sbjct: 186 KQTWTNNMSKMGKAKITDCKGQDYTKVTFTPDFKKFGMEGVDDDFEALVKRRVYDMAGTC 245

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           ++ ++                 +       +R ++   +    I     +   ++    +
Sbjct: 246 KV-IVKLNGSRIPVRNFKQYMAMYTNAIKKERGEEAA-KDKTEILLDNPDPRWEVGFAVS 303

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           DG  + V  F N+I    GG+H++ +   +  ++   V+K   +     S+     R   
Sbjct: 304 DGSFQQV-SFVNSIATTSGGSHVNAVADQICNRLAETVKKRNKTG---ASLKPAQIRNHI 359

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
              ++ ++ +P F+SQTKE+L +   +   +  +++     + +  +   I+      A 
Sbjct: 360 FVFVNSQIVNPAFTSQTKEQLTTKPSQFGSKIVLSEEFLKKVIKTQVMENIMHFAEKKAD 419

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS-- 444
            +   +   R        L  A+  G       ++     L L EGDSA G A  GR+  
Sbjct: 420 QILKKSDGNRRSRMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAIV 473

Query: 445 -RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
             +   + PLRGK+LNV  A  D++  + EI  +   LG    ++  D   LRY  ++IM
Sbjct: 474 GPDLFGVFPLRGKMLNVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIM 533

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDY 562
           TD D DG+HI+ LL+ F     PSL+      I    P+  + +G     +  +      
Sbjct: 534 TDQDHDGSHIKGLLINFLQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPIISKSFFTMQ 593

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                           K            D  +    L K     H     E  +I   F
Sbjct: 594 EYETWKEIHGHDRRWEKKYYKGLGTSTTEDAEIYFQDLDKHLKQFHVMQDNEAQLIDLAF 653

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
           + +   E       +            E ++   IN   IL  
Sbjct: 654 SKKKADER-KEWLRQFKPGTFLDHTTEEITYTDFINKELILFS 695


>gi|188090316|gb|ACD49392.1| gyrase subunit B [Xanthomonas oryzae]
          Length = 288

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLFTSANEAIARTAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E +Q   +     + NR      + +  +  +  N+   ++  R 
Sbjct: 121 ALIDLPPLDVETLQAEGNQHPALDALQAVLNRGTLGTARYQLRFDPATENAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL+  +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLQMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHSITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I +A  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEEAVAADQ 288


>gi|30793676|gb|AAM52900.1| DNA gyrase subunit beta [Aeromonas bestiarum]
          Length = 321

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 239/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV + VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVETAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|210078015|emb|CAR94875.1| DNA gyrase B subunit [Ochrobactrum rhizosphaerae]
          Length = 341

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 221/342 (64%), Positives = 280/342 (81%), Gaps = 1/342 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           LKL+I+R G I+EMSF +G+ D+PLVVTG AG+DTGTEV+FLPS+D F++ +F+YDTL+ 
Sbjct: 1   LKLKIRRAGKIHEMSFTHGVADSPLVVTGEAGSDTGTEVSFLPSTDTFTMVEFDYDTLER 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLREL+FLNS V+I+L D+R  + RE  + Y GG+  FV Y+D+ KK L++ PI I+  +
Sbjct: 61  RLRELAFLNSGVRINLADRRHADIREQVLHYDGGVVEFVKYIDKGKKALLEEPIYIRSEK 120

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQ+T Y + S  +KK+K
Sbjct: 121 DGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYADSSGLTKKEK 180

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
             + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ LS WLEEHP  
Sbjct: 181 VQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRQVVESLVNEALSTWLEEHPSG 240

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
            K IV+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLADC ERDP KSE+F+VEGDS
Sbjct: 241 GKTIVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDPAKSEIFIVEGDS 299

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           AGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GT
Sbjct: 300 AGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGT 341


>gi|37931133|gb|AAP69927.1| DNA gyrase subunit beta [Aeromonas sp. 120P]
          Length = 321

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 239/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKEPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|225555588|gb|EEH03879.1| DNA topoisomerase II [Ajellomyces capsulatus G186AR]
          Length = 1716

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 117/583 (20%), Positives = 213/583 (36%), Gaps = 19/583 (3%)

Query: 89  KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIY 146
           K+E +   E++   L +   ++    KV+GG +G G  + N  S+   L          Y
Sbjct: 140 KKEKVYIPELVFGHLLSSSNYDDNQQKVTGGRNGYGAKLCNIFSTQFTLETADSKLKKKY 199

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           + ++ + +             D  T+VTF+P    F +   + D      R +  L  + 
Sbjct: 200 KQTWTDNMSKMGKPKITDCKGDDYTKVTFIPDFKKFGMDGIDDDFEALVKRRVYDLAGTC 259

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
           ++++    S  P          +       +R ++   +    I     +   ++    +
Sbjct: 260 KVNVKLNGSRIPIR-NFKQYMQMYTNAIKKERGEEAA-KDKSEIITDNPDPRWEIGFAVS 317

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           DG  + V  F N+I    GG+H++ +   +  ++   V+K   +     ++     R   
Sbjct: 318 DGSFQQV-SFVNSIATTSGGSHVNSVADQICNKLVDAVKKKNKTG---ATLKPAQIRNHI 373

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
              ++ ++ +P F+SQTKE+L +   +   +  ++D     + +  +   I+      A 
Sbjct: 374 FVFVNAQIVNPAFTSQTKEQLTTKPSQFGSKCVLSDEFLKKILKTQVMENILHFAEKKAD 433

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS-- 444
            +       R        L  A+  G       ++     L L EGDSA G A  GR+  
Sbjct: 434 QILKKTDGNRRSRMNNPKLTDANKAG------TKEGHHCTLILTEGDSAKGLAMAGRAIV 487

Query: 445 -RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
             +   + PLRGK+LNV  A  D++  + EI  +   LG    ++  D   LRY  ++IM
Sbjct: 488 GPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIM 547

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDY 562
           TD D DG+HI+ LL+ FF    PSL+      I    P+  + +G        +      
Sbjct: 548 TDQDHDGSHIKGLLINFFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKVFFTMQ 607

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
                           K         +  D  +    L K     H     E  +I   F
Sbjct: 608 EYKTWQEIHGHDKRWEKKYYKGLGTSSTDDAEIYFRDLDKHLKQFHVMQDHEAELIDLAF 667

Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
           + +   E       +            E ++   IN   IL  
Sbjct: 668 SKKKADER-KEWLRQFKPGTFLDHTTDEITYTDFINKELILFS 709


>gi|109820363|gb|ABG46518.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 180/287 (62%), Positives = 225/287 (78%)

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 4   LRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSE 63

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD   LP
Sbjct: 64  VRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLP 123

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 124 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLSS 183

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           QE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I  
Sbjct: 184 QEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIER 243

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   I +  D 
Sbjct: 244 GHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAILVRADG 290


>gi|109820357|gb|ABG46515.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820359|gb|ABG46516.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820361|gb|ABG46517.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 180/287 (62%), Positives = 226/287 (78%)

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 4   LRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSE 63

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR  VE  V+  L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD   LP
Sbjct: 64  VRLPVEEIVSKVLNDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLP 123

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 124 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLSS 183

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           QE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I  
Sbjct: 184 QEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIER 243

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   I +  D 
Sbjct: 244 GHVYIAQPPLYKIKHGKDERYIKDDNEMAAYLMRQALDTAILVRADG 290


>gi|255927059|gb|ACU40915.1| DNA gyrase [Pantoea sp. 1400/07]
          Length = 299

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 166/302 (54%), Positives = 225/302 (74%), Gaps = 4/302 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG +++ ++++G+   PL VTG   + TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELTIRREGKVHQQTYVHGVPQAPLAVTGET-DLTGTRVRFW 59

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS   F+   DF Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV Y
Sbjct: 60  PSHQTFTNVTDFEYEILAKRLRELSFLNSGVSIRLEDKRTDKS--DHYHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 118 LNKNKNPIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VES +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLA
Sbjct: 238 VESQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLA 297

Query: 416 DC 417
           DC
Sbjct: 298 DC 299


>gi|242117650|dbj|BAH80097.1| DNA gyrase beta subunit [Aeromonas salmonicida subsp. salmonicida]
 gi|288269643|dbj|BAI68105.1| DNA gyrase beta subunit [Aeromonas salmonicida]
          Length = 320

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 181/322 (56%), Positives = 239/322 (74%), Gaps = 2/322 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVER 462
           QGR+R+NQAILPL+GKILNVE+
Sbjct: 299 QGRNRKNQAILPLKGKILNVEK 320


>gi|297595838|gb|ADI48228.1| DNA gyrase B [Erwinia sp. CECT 5264]
          Length = 307

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 170/310 (54%), Positives = 227/310 (73%), Gaps = 4/310 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG +++  +++G+   PL VTG   + TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELTIRREGKVHQQIYVHGVPQAPLSVTGET-DITGTRVRFW 59

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F+   DF Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV Y
Sbjct: 60  PSHETFTNVTDFEYEILAKRLRELSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A
Sbjct: 118 LNKNKTPIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE  +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGKLA
Sbjct: 238 VEQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLA 297

Query: 416 DCSERDPKKS 425
           DC ERDP  S
Sbjct: 298 DCQERDPAMS 307


>gi|188090226|gb|ACD49347.1| gyrase subunit B [Xanthomonas campestris pv. campestris]
 gi|188090284|gb|ACD49376.1| gyrase subunit B [Xanthomonas campestris pv. incanae]
 gi|188090294|gb|ACD49381.1| gyrase subunit B [Xanthomonas campestris pv. raphani]
 gi|188090366|gb|ACD49417.1| gyrase subunit B [Xanthomonas campestris pv. campestris]
          Length = 288

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 140/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +       + I      +D   + 
Sbjct: 61  DDAALNAYLASSAVEGAALIPASDEPPITGEALEKLLLLFAGAKEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E D    +     + NR      +    +  + +++   ++  R 
Sbjct: 121 ALIDLPPLDVVQLQAEGDVHPTLDALQAVLNRGTLGTARYHLRFDPATDSAAASLVSVRK 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  +  +         ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVALALHGLVREGAQILRGNKSHPITSFAQAQAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|164456617|dbj|BAF97801.1| gyrase B subunit [Photobacterium iliopiscarium]
          Length = 279

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 145/281 (51%), Positives = 201/281 (71%), Gaps = 4/281 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ NG+   PL   G + + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCNGVPQAPLAEVGDS-DKTGT 59

Query: 172 EVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++    Y+GGI 
Sbjct: 60  RLRFWPSEETFTTNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHFTYEGGIR 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+DGGTHL
Sbjct: 119 AFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           SEV++ VES +N+  + +L E P +AKII  K++DAS  R+
Sbjct: 239 SEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRARE 279


>gi|210078007|emb|CAR94871.1| DNA gyrase B subunit [Ochrobactrum sp. CCUG 50899]
          Length = 341

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 219/342 (64%), Positives = 278/342 (81%), Gaps = 1/342 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           LKL+I+R G I+EM+F +G+ D PL+VTG AG+DTGTEV+FLPS D F++ +F+YDTL+ 
Sbjct: 1   LKLKIRRAGKIHEMAFTHGVADAPLIVTGDAGSDTGTEVSFLPSPDTFTMIEFDYDTLER 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLREL+FLNS V+I L D+R  + RE  + Y GG+  FV Y+D+ KK L+++PI I+  +
Sbjct: 61  RLRELAFLNSGVRIKLADRRHADIREQELHYDGGVIEFVKYIDKGKKALLETPIYIKSEK 120

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQ+T Y + S  +KK+K
Sbjct: 121 DGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYADASGMTKKEK 180

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
             + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ LS WLEEHP  
Sbjct: 181 VQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSTWLEEHPAG 240

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
            K IV+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLADC ERDP KSE+F+VEGDS
Sbjct: 241 GKTIVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDPAKSEIFIVEGDS 299

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           AGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GT
Sbjct: 300 AGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGT 341


>gi|188090358|gb|ACD49413.1| gyrase subunit B [Xanthomonas populi]
 gi|188090362|gb|ACD49415.1| gyrase subunit B [Xanthomonas populi]
 gi|188090380|gb|ACD49424.1| gyrase subunit B [Xanthomonas populi]
          Length = 288

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 144/288 (50%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           +RYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   VRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPASDEPPITGEALEKLLMLFTGANEAIARNAHRYDPALMT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD--ILVKRI 667
             +     +      E DQ   +     + NR      + +  +  + +++   ++  R 
Sbjct: 121 ALIDLPPLDVAKLQAEGDQHPTLDKLQAVLNRGTLGTARYQLRFDPATDSTSATLVAVRK 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  +  ++        ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVALALDGLVREGAQIVRGNKTQSITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 EEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|285026265|dbj|BAI67861.1| DNA gyrase B [Rubritalea sp. YM29-130]
          Length = 360

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 167/360 (46%), Positives = 226/360 (62%), Gaps = 15/360 (4%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD-FNY 189
           S W K  + R+G +++++F  G   NPL V G A  + TGT+VTF P + IF     F +
Sbjct: 1   SDWFKAEVTRDGKVHQITFERGKTVNPLEVVGEAPSDKTGTKVTFYPDATIFVDTIIFEF 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLREL+FLN  + I L D+R    ++ T +Y  GIE FV  L  +K  + + P+ 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDERPESEKKETFYYAKGIEEFVVQLGENKTTVHEEPVV 120

Query: 250 IQGSRD------------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + G R             ++  D+  ++ND Y +N+LC+ N+IP  DGGTHL+G R ALT
Sbjct: 121 LTGKRQVEIDYDGKVMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGFRGALT 180

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y + +   K    S+ GDD REG   V+S+KMP+PRFSSQTK+KLV++E+  VV 
Sbjct: 181 RSINQYAKANKILKDKDPSLSGDDVREGIICVISVKMPNPRFSSQTKDKLVNAEIEGVVS 240

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V +GL A+ +E+P  AK I+ K +  +     A R    T RK V+    LPGKLADC
Sbjct: 241 SIVYEGLQAYFDENPNLAKQIIDKAV-NAARAREAARKARETVRKSVMSGGGLPGKLADC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERDP KSEL++VEGDSAGGSAK GR+R NQAILPLRGK++NVE+AR  K L ++EI  +
Sbjct: 300 SERDPAKSELYIVEGDSAGGSAKSGRNRINQAILPLRGKVINVEKARLHKALQNKEIQAM 359


>gi|110225008|dbj|BAE97493.1| DNA gyrase subunit B [Streptococcus ratti]
          Length = 300

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 195/300 (65%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   +  G++ + L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGKIHFQEYYRGVVADDLKVIGDT-DITG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR  + +     Y+GGI
Sbjct: 60  TIVHFTPDPEIFTETTEFDFDKLAKRIQELAFLNKGLRISITDKRPGQEKSEEFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +++ +K  +   PI   G  D I++++AM++  G+HEN++ F NNI   +GGTH 
Sbjct: 120 VSYVEFINENKDVIFNHPIYTDGEMDGITVEVAMQYTSGFHENIMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+++S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAIISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D LS +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDALSRFLLENPQTAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|110225010|dbj|BAE97494.1| DNA gyrase subunit B [Streptococcus sanguinis]
          Length = 300

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 194/300 (64%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 ASYVQYINENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|213423770|ref|ZP_03356750.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 142

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 71/145 (48%), Positives = 107/145 (73%), Gaps = 4/145 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFI 151
           VVNALS  +++ ++R+G +Y ++F 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFE 142


>gi|66271256|gb|AAY43841.1| DNA gyrase subunit B [Vibrio sp. NRW 9805]
          Length = 265

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 137/267 (51%), Positives = 192/267 (71%), Gaps = 3/267 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-D 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++ F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       ++G
Sbjct: 60  QTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEG 118

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GI+AFV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 119 GIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+K
Sbjct: 179 THLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDK 238

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPL 373
           LVSSEV S VES + + LS +L E+P 
Sbjct: 239 LVSSEVNSAVESSMGEKLSEFLIENPT 265


>gi|322875022|gb|ADX20834.1| DNA gyrase subunit B [Legionella feeleii]
          Length = 208

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 126/209 (60%), Positives = 156/209 (74%), Gaps = 3/209 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I
Sbjct: 1   GRGIPVDIHKEEGRSAAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLSI 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
            R G ++E  + NG+ D PL VTG A   TGT+V F PS++ F+  +F+YD L  RLREL
Sbjct: 61  HRNGKLHEQHYRNGVPDAPLAVTGDAT-ATGTQVWFKPSANTFNNIEFHYDILAKRLREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           SFLNS V I L D+RS +  + T  Y+GGI+AFV +L+R+K P+M     + G +DNIS+
Sbjct: 120 SFLNSGVCIYLYDERSQK--QDTFRYEGGIQAFVEHLNRNKTPIMPIVFSLSGVKDNISV 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           DL+++WND + E + CFTNNIPQ+DGGTH
Sbjct: 178 DLSLQWNDSFQETIFCFTNNIPQRDGGTH 206


>gi|164456703|dbj|BAF97844.1| gyrase B subunit [Vibrio neptunius]
          Length = 274

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 147/276 (53%), Positives = 198/276 (71%), Gaps = 3/276 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLSVIGET-DKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           E+ F PS + FS  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+A
Sbjct: 60  EIRFWPSEETFSNTEFHYDILAKRLRELSFLNSGVSIKLRDER-EEDKQDHFMYEGGIQA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+ +K P+++        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 FVDHLNTNKTPIIEKVFHFNAEREDGIAVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           EV+S VE  + + LS +L EHP EAK +  K++DA+
Sbjct: 239 EVKSAVEQAMGEKLSEFLIEHPAEAKTVCTKIIDAA 274


>gi|307343768|emb|CBJ19489.1| gyrase B subunit [Micromonospora eburnea]
          Length = 368

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 164/371 (44%), Positives = 238/371 (64%), Gaps = 9/371 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I ++G ++   + N     PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKDGFVWRQQYHNSKP-TPLEK-GEPTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FL   + I L+D+R       +PRE+T  Y+GGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLTRGLTIHLLDERAPEGEEGKPREVTFHYEGGIADFVRHLNASKNPIHKTVVEFG 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G R+ALT  +  Y        
Sbjct: 120 AEEEGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGADKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +
Sbjct: 179 KGDERLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNESLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAKII+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FD
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFD 357

Query: 492 INKLRYHKIII 502
           I KLRYHKI++
Sbjct: 358 IEKLRYHKILL 368


>gi|4514457|dbj|BAA75427.1| DNA gyrase subunit B [Acinetobacter johnsonii]
          Length = 303

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 210/306 (68%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I R G+I++  + +G    PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPVYPLTVVGDTDM-TG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--HAEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L         + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINQGKTHLNDIFHFTVQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|164456645|dbj|BAF97815.1| gyrase B subunit [Vibrio campbellii]
          Length = 274

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 144/276 (52%), Positives = 200/276 (72%), Gaps = 3/276 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G     TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDTE-KTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           ++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+A
Sbjct: 60  QIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 FVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           EV+S VES + + LS +L E+P EAK++  K++DA+
Sbjct: 239 EVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAA 274


>gi|110224960|dbj|BAE97469.1| DNA gyrase subunit B [Streptococcus cristatus]
          Length = 300

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 194/300 (64%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGQVVADLEIIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  + ++PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 ASYVQYINENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|109820271|gb|ABG46472.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820313|gb|ABG46493.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820321|gb|ABG46497.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820327|gb|ABG46500.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820337|gb|ABG46505.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820339|gb|ABG46506.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820343|gb|ABG46508.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820345|gb|ABG46509.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 180/287 (62%), Positives = 226/287 (78%)

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 4   LRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSE 63

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD   LP
Sbjct: 64  VRLPVEEMVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLP 123

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 124 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLSS 183

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           QE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP++I  
Sbjct: 184 QEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPAIIER 243

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   I +  D 
Sbjct: 244 GHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAILVRADG 290


>gi|322875024|gb|ADX20835.1| DNA gyrase subunit B [Fluoribacter gormanii]
          Length = 208

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 119/210 (56%), Positives = 155/210 (73%), Gaps = 3/210 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L +
Sbjct: 1   GRGIPVDIHKEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTV 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G I+E  + NG+ + P+  TG A   TGT++ F PS++ FS  +F+YD L  RLREL
Sbjct: 61  RRHGKIHEQHYRNGVPEAPMAETGDAT-TTGTQIWFKPSAETFSNIEFHYDILAKRLREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           S+LNS V I L D+RS   R+ T  Y+GGI+AFV +L+++K  ++ +   +   +DNI +
Sbjct: 120 SYLNSGVCIHLFDERS--QRQDTFHYEGGIKAFVEHLNKNKTVIIPTVFSMSAEKDNIVV 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +L+M+WND Y E + CFTNNIPQ+DGGTH+
Sbjct: 178 ELSMQWNDSYQETLYCFTNNIPQRDGGTHM 207


>gi|295148903|gb|ADF80937.1| DNA gyrase subunit B [Vibrio sp. MA35]
          Length = 275

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 143/277 (51%), Positives = 200/277 (72%), Gaps = 3/277 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVG+SVVNALS  ++L I R G I+  ++ +G+ D PL   G    D+GT+V
Sbjct: 1   YKVSGGLHGVGISVVNALSEKVELTIHRNGKIHTQTYHHGVPDEPLKEIGDTE-DSGTKV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS++ F+  +F Y+ L  RLRELSFLNS V I L D+R  + ++    Y GGI+AFV
Sbjct: 60  RFWPSAETFTNIEFVYEILAKRLRELSFLNSGVSIHLRDER-EDNKQNHYMYDGGIQAFV 118

Query: 234 SYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           ++L+R+K P+ +        R++ I++++A++WNDG+ E++ CFTNNIPQ+DGGTHL+G 
Sbjct: 119 THLNRNKTPIHEKVFHFVQEREDGITVEVALQWNDGFQESIFCFTNNIPQRDGGTHLAGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR + SY++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 179 RAALTRTLNSYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S VE+ + + L  +L EHP EAK I  K++DA+  R
Sbjct: 239 KSAVETTMGEKLGDYLAEHPNEAKTICTKIIDAARAR 275


>gi|109820251|gb|ABG46462.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820253|gb|ABG46463.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820255|gb|ABG46464.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820257|gb|ABG46465.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820259|gb|ABG46466.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820261|gb|ABG46467.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820263|gb|ABG46468.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820267|gb|ABG46470.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820273|gb|ABG46473.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820277|gb|ABG46475.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820279|gb|ABG46476.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820281|gb|ABG46477.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820283|gb|ABG46478.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820285|gb|ABG46479.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820293|gb|ABG46483.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820299|gb|ABG46486.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820303|gb|ABG46488.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820305|gb|ABG46489.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820307|gb|ABG46490.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820309|gb|ABG46491.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820311|gb|ABG46492.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820317|gb|ABG46495.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820319|gb|ABG46496.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820323|gb|ABG46498.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820325|gb|ABG46499.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820331|gb|ABG46502.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820333|gb|ABG46503.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 178/287 (62%), Positives = 224/287 (78%)

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
           LR+A+TR I  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSSE
Sbjct: 4   LRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSE 63

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           VR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD   LP
Sbjct: 64  VRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLP 123

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLADC E+DP  SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKMLSS
Sbjct: 124 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLSS 183

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           QE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I  
Sbjct: 184 QEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIER 243

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           G +YI +PPLY I  GK  +Y+KD+  +  YL+ Q+L   + +  D 
Sbjct: 244 GHVYIAQPPLYKIKHGKEERYIKDDNEMAAYLMRQALDTALLVRADG 290


>gi|210078013|emb|CAR94874.1| DNA gyrase B subunit [Ochrobactrum thiophenivorans]
          Length = 341

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 218/342 (63%), Positives = 279/342 (81%), Gaps = 1/342 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           LKL+++R G I+E++F +G+ D PL+VTG AG++TGTEV+FLPS D F++ +F++DTL+ 
Sbjct: 1   LKLKVRRAGKIHEIAFTHGVADAPLIVTGDAGSETGTEVSFLPSPDTFTMVEFDFDTLER 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLREL+FLNS V+I L D+R  + +E  + Y GG+  FV YLD+ KK L+Q PI I+  +
Sbjct: 61  RLRELAFLNSGVRIKLADRRHADVKEHELHYDGGVVEFVRYLDQSKKSLLQEPIYIRSEK 120

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQ+T Y + S  +KK+K
Sbjct: 121 DGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYADSSGMTKKEK 180

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ LS WLEEHP  
Sbjct: 181 VSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSTWLEEHPAG 240

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
            KIIV+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLADC ERDP KSE+F+VEGDS
Sbjct: 241 GKIIVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDPAKSEIFIVEGDS 299

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           AGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GT
Sbjct: 300 AGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGT 341


>gi|146320608|ref|YP_001200319.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 98HAH33]
 gi|145691414|gb|ABP91919.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 98HAH33]
          Length = 471

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 173/445 (38%), Positives = 260/445 (58%), Gaps = 14/445 (3%)

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           +P   IFS  DF ++T+  RL+E +FL   V ++L D+R+ E       Y+ G++ FVSY
Sbjct: 1   MPDDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGEQ--EEYHYENGVQDFVSY 58

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+  K+ L       +G      + +AM++NDGY +N+L F NN+  KDGGTH +GL+ A
Sbjct: 59  LNEDKETLTPVL-YFEGEDAGFQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLA 117

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVR 353
           +T+ +  Y  K+   K+  +++ G D REG ++VLSI +P+   +F  QTK+KL S   R
Sbjct: 118 ITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLAR 177

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--P 411
            VV+  V+D L+ +L E+   A  +V+K + A   R+AAR+ARD +R             
Sbjct: 178 PVVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLS 237

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKL     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N  +A+   +L +
Sbjct: 238 GKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKN 297

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +EI T+I  +G G+G D F I  + Y KIIIMTDAD DGAHI+TLLLTFF+R M  L+  
Sbjct: 298 EEINTMIYTIGAGVGSD-FTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEA 356

Query: 532 GFLYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           G +YI  PPLY +++G    + + Y   +  LED   +      ++ +     + +    
Sbjct: 357 GRVYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLW 416

Query: 588 RNFIDDALK--IDKLIKDFYPNHDK 610
              ++   +  I   I+D      +
Sbjct: 417 ETTMNPETRTLIRVTIEDLARAERR 441



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 61/95 (64%)

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              +       +KI        L+ +     KG  +QRYKGLGEMNA QLWETT+NP+TR
Sbjct: 366 LYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWETTMNPETR 425

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV I D ++A+   S LMGD+VEPRR++I++N
Sbjct: 426 TLIRVTIEDLARAERRVSVLMGDKVEPRRKWIEDN 460


>gi|285026263|dbj|BAI67860.1| DNA gyrase B [Rubritalea tangerina]
          Length = 360

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 166/360 (46%), Positives = 226/360 (62%), Gaps = 15/360 (4%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD-FNY 189
           S W K  + R+G +++++F  G   NPL V G A  + TGT+VTF P + IF     F +
Sbjct: 1   SDWFKAEVTRDGKVHQITFERGKTVNPLEVVGEAPSDKTGTKVTFYPDATIFVDTIVFEF 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  RLREL+FLN  + I L D+R    ++ T +Y  GIE FV  L  +K  + + P+ 
Sbjct: 61  ERLATRLRELTFLNPGLTIILEDERPESEKKETFYYAKGIEEFVVQLGENKTTVHEEPVV 120

Query: 250 IQGSRD------------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + G R             ++  D+  ++ND Y +N+LC+ N+IP  DGGTHL+G R ALT
Sbjct: 121 LTGKRQVEIDYDGKVMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGFRGALT 180

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y + +   K    S+ GDD REG   V+S+KMP+PRFSSQTK+KLV++E+  VV 
Sbjct: 181 RSINQYAKANKILKDKDPSLSGDDVREGIICVISVKMPNPRFSSQTKDKLVNAEIEGVVS 240

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V +GL A+ +E+P  AK I+ K +  +     A R    T RK V+    LPGKLADC
Sbjct: 241 SIVYEGLQAYFDENPNLAKQIIDKAV-NAARAREAARKARETVRKSVMSGGGLPGKLADC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERDP KSEL++VEGDSAGGSAK GR+R NQAILPLRGK++NVE+AR  K L ++EI  +
Sbjct: 300 SERDPAKSELYIVEGDSAGGSAKSGRNRINQAILPLRGKVINVEKARLHKALQNKEIQAM 359


>gi|327343605|dbj|BAK09547.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 1]
 gi|327343607|dbj|BAK09548.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 1]
 gi|327343609|dbj|BAK09549.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 1]
 gi|327343613|dbj|BAK09551.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 1]
          Length = 321

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 157/324 (48%), Positives = 224/324 (69%), Gaps = 4/324 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF++ SYKVSGGLHGVG+SVVNALS  L+L IKR+G IY   +  G+    L + G   
Sbjct: 1   GKFDEISYKVSGGLHGVGISVVNALSQKLELIIKRQGKIYRQLYNTGVSQTTLEIIGET- 59

Query: 167 NDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           N TGT + F P+  IF    +F YD L  R+REL+FLN  + IS+ D R       +   
Sbjct: 60  NQTGTYIRFWPNPLIFQKNIEFKYDILVKRIRELAFLNPGLSISIKDNRI--NIHHSFQE 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI+AFV++L ++K  +  +       +D IS+++A+ W + +  ++ CFTNNIPQ+DG
Sbjct: 118 DGGIKAFVAFLSKNKILIHSNIFHFIAEKDKISVEIALHWTNTFQNHIYCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHLSG RSA+TR I +Y+++   +KK K ++IGDD REG  +++SIK  +P+FSSQTK+
Sbjct: 178 GTHLSGFRSAITRTINTYIDREGYNKKSKVNIIGDDTREGIVAIVSIKAHNPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSE++S VE+ +N+ L  +L EHP +AK IV K++ A+  R+AAR+ R++TR+KG L
Sbjct: 238 KLVSSEIKSAVETLMNEYLIQYLLEHPQDAKSIVGKIISAARTREAARKVREITRKKGTL 297

Query: 406 DIASLPGKLADCSERDPKKSELFL 429
           DI+ L GKLADC E++P  +EL+L
Sbjct: 298 DISILSGKLADCQEKNPILNELYL 321


>gi|73490225|dbj|BAE19787.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 306

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 164/309 (53%), Positives = 222/309 (71%), Gaps = 3/309 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVDYLNTNKNPVNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKFFSDFLLEHPNEAKLIVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSE 419
           PGKLADC E
Sbjct: 298 PGKLADCQE 306


>gi|218139451|gb|ACK57882.1| GyrB [Actinobaculum schaalii]
          Length = 402

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 173/403 (42%), Positives = 247/403 (61%), Gaps = 26/403 (6%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNA S+ ++  +KR+G ++ +++ NG+     +  G    +TGT  TF  + DIF
Sbjct: 1   VGVSVVNAXSTRMETIVKRDGYVWRIAYENGVP-TRELERGEETTETGTTQTFWANPDIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------SPEPREIT 222
              D++++TL+ R  +++FLN +++I+LID+R                     P  RE++
Sbjct: 60  ETTDYDFETLRKRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGETAAEVPAKREVS 119

Query: 223 MFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278
             Y GG+  +V +L+  KK        I  +       I +++AM+W   Y E+V  F N
Sbjct: 120 YCYSGGLLDYVKFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFAN 179

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GG H  G RSALT  I  Y  +    K    ++ GDD REG T+V+S+K+ +P+
Sbjct: 180 TINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTAVISVKLGNPQ 239

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++E R+ V+  +   LS WL+ HP +AK I++K   A   R AAR+AR+ 
Sbjct: 240 FEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKAREA 299

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRK VL+ AS+PGKL DC+   P++ E+F+VEGDSAGGSA  GR  E+QAI+P+RGKIL
Sbjct: 300 TRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKIL 359

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           NVE+AR D+ LSS  I +LITA GTGIG D FDI+K  YHKII
Sbjct: 360 NVEKARLDRALSSDTIQSLITAFGTGIG-DEFDIDKXXYHKII 401


>gi|188090244|gb|ACD49356.1| gyrase subunit B [Xanthomonas perforans]
          Length = 288

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E DQ   +     + NR      + +  +     N+   ++  R 
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSENAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR L +V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLWQVRIEDAVAADQ 288


>gi|110225022|dbj|BAE97500.1| DNA gyrase subunit B [Streptococcus thermophilus]
          Length = 300

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 125/300 (41%), Positives = 190/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +++ + G+I+   +  G++ + L + G    + G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVDDLRIIGETE-EHG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F+P  +IF     F+++ L  R +EL+FLN  ++IS+ DKR    +E    Y+GGI
Sbjct: 60  TTVHFIPDPEIFQETTEFDFEKLAKRFQELAFLNKGLRISITDKREGLEQEKHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  +   PI   G  D IS+++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 TSYVKYINENKDVIFDEPIYTYGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  ++   K+   ++ GDD REG T+++S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++ LS +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|285026259|dbj|BAI67858.1| DNA gyrase B [Rubritalea sabuli]
          Length = 360

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 167/360 (46%), Positives = 225/360 (62%), Gaps = 15/360 (4%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD-FNY 189
           S W +  + R+G +Y++ F  G    PL V G A +  TGT+VTF P + IF     F +
Sbjct: 1   SDWFRAEVTRDGKVYQIQFERGKTTEPLEVVGEAPSSKTGTKVTFFPDATIFVDTIEFEF 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLREL+FLN  + I L D+   + R+ T FY  GIE FV  L  +K  + +SP+ 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDENPEKSRKETFFYARGIEEFVEQLGVNKTTVHESPVV 120

Query: 250 IQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + G R            D++  D+  ++ND Y +N+LC+ N+IP  DGGTHL+G R ALT
Sbjct: 121 LTGKRKVEIDYDGKTMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGFRGALT 180

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y + +   K    S+ GDD REG   V+S+KMP+PRFSSQTK+KLV++E+  VV 
Sbjct: 181 RSINQYAKANKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEIEGVVS 240

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V +GL  + EE+P  AK+I+ K +  +     A R    T RK V+    LPGKLADC
Sbjct: 241 SIVYEGLQEYFEENPNLAKMIIDKAV-NAARAREAARKARETVRKSVMSGGGLPGKLADC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERDP KSE+++VEGDSAGGSAK GR+R  QAILPLRGK++NVE+AR  K L ++EI  +
Sbjct: 300 SERDPAKSEIYIVEGDSAGGSAKSGRNRTTQAILPLRGKVINVEKARLHKALQNKEIQAM 359


>gi|93277212|gb|ABF06424.1| gyrase B [Streptomyces sp. C35]
          Length = 376

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 162/376 (43%), Positives = 237/376 (63%), Gaps = 20/376 (5%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ + + +K +G+ +   +  G+   PL     A  +TGT VTF    DIF   D
Sbjct: 2   VVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLQR-HEATEETGTSVTFWADGDIFETTD 60

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230
           ++++TL  R +E++FLN  ++I+L D+R                  E + ++  Y+GGI 
Sbjct: 61  YSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGIV 120

Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
            FV Y   R  + +  + I ++      ++S+++AM+WN GY E V  F N I   +GGT
Sbjct: 121 DFVKYLNSRKGEVIHPTVIDLEAEDRERHLSLEVAMQWNGGYTEGVYSFANIIHTHEGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +P+F  QTK KL
Sbjct: 181 HEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTKL 240

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++EV++ V+  V + L+ WL+ +P EA  IV+K + A+  R AAR+ARDLTRRKG+L+ 
Sbjct: 241 GNTEVKTFVQKVVYEHLADWLDRNPNEAADIVRKGIAAATARVAARKARDLTRRKGLLET 300

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+AR D+
Sbjct: 301 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKXGRNPEYQAILPIRGKILNVEKARIDR 360

Query: 468 MLSSQEIGTLITALGT 483
           +L +QEI  +I+A GT
Sbjct: 361 ILQNQEIQAMISAFGT 376


>gi|322875018|gb|ADX20832.1| DNA gyrase subunit B [Fluoribacter bozemanae]
          Length = 208

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 121/210 (57%), Positives = 154/210 (73%), Gaps = 3/210 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L +
Sbjct: 1   GRGIPVDIHKEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTV 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G I+E  + NG+ D P+  TG A   TGT++ F PS++ FS  +F+YD L  RLREL
Sbjct: 61  RRHGKIHEQHYRNGVPDAPMAETGDAS-TTGTQIWFKPSAETFSNIEFHYDILAKRLREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           S+LNS V I L D+RS   R+ T  Y+GGI AFV +L+++K  +M +   +   +DNI +
Sbjct: 120 SYLNSGVCIHLFDERS--QRQDTFHYEGGITAFVEHLNKNKNTIMPTVFSMTAEKDNIVV 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +L+M+WND Y E + CFTNNIPQ+DGGTH+
Sbjct: 178 ELSMQWNDSYQETLYCFTNNIPQRDGGTHM 207


>gi|327343611|dbj|BAK09550.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 1]
          Length = 321

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 157/324 (48%), Positives = 224/324 (69%), Gaps = 4/324 (1%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF++ SYKVSGGLHGVG+SVVNALS  L+L IKR+G IY   +  G+    L + G   
Sbjct: 1   GKFDEISYKVSGGLHGVGISVVNALSQKLELIIKRQGKIYRQLYNTGVSQTTLEIIGET- 59

Query: 167 NDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
           N TGT + F P+  IF    +F YD L  R+REL+FLN  + IS+ D R       +   
Sbjct: 60  NQTGTYIRFWPNPLIFQKNIEFKYDILVKRIRELAFLNPGLSISIKDNRI--NIYHSFQE 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GGI+AFV++L ++K  +  +       +D IS+++A+ W + +  ++ CFTNNIPQ+DG
Sbjct: 118 DGGIKAFVAFLSKNKILIHSNIFHFIAEKDKISVEIALHWTNTFQNHIYCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHLSG RSA+TR I +Y+++   +KK K ++IGDD REG  +++SIK  +P+FSSQTK+
Sbjct: 178 GTHLSGFRSAITRTINTYIDREGYNKKSKVNIIGDDTREGIVAIVSIKAHNPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           KLVSSE++S VE+ +N+ L  +L EHP +AK IV K++ A+  R+AAR+ R++TR+KG L
Sbjct: 238 KLVSSEIKSAVETLMNEYLIQYLLEHPQDAKSIVGKIISAARTREAARKVREITRKKGTL 297

Query: 406 DIASLPGKLADCSERDPKKSELFL 429
           DI+ L GKLADC E++P  +EL+L
Sbjct: 298 DISILSGKLADCQEKNPILNELYL 321


>gi|285026257|dbj|BAI67857.1| DNA gyrase B [Rubritalea squalenifaciens]
          Length = 360

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 166/360 (46%), Positives = 225/360 (62%), Gaps = 15/360 (4%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD-FNY 189
           S W +  + R+G +Y++ F  G    PL V G A +  TGT++TF P + IF     F +
Sbjct: 1   SDWFRAEVTRDGKVYQIQFERGKTTEPLEVVGEAPSSKTGTKITFFPDATIFVDTIEFEF 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLREL+FLN  + I L D+   + R+ T FY  GIE FV  L  +K  + +SP+ 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDENPEKSRKETFFYARGIEEFVEQLGVNKTTVHESPVV 120

Query: 250 IQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + G R            D++  D+  ++ND Y +N+LC+ N+IP  DGGTHL+G R ALT
Sbjct: 121 LTGKRKVEIDYDGKTMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGFRGALT 180

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y + +   K    S+ GDD REG   V+S+KMP+PRFSSQTK+KLV++E+  VV 
Sbjct: 181 RSINQYAKANKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEIEGVVS 240

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V +GL  + EE+P  AK+I+ K +  +     A R    T RK V+    LPGKLADC
Sbjct: 241 SIVYEGLQEYFEENPNLAKMIIDKAV-NAARAREAARKARETVRKSVMSGGGLPGKLADC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERDP KSE+++VEGDSAGGSAK GR+R  QAILPLRGK++NVE+AR  K L ++EI  +
Sbjct: 300 SERDPAKSEIYIVEGDSAGGSAKSGRNRTTQAILPLRGKVINVEKARLHKALQNKEIQAM 359


>gi|37931149|gb|AAP69935.1| DNA gyrase subunit beta [Aeromonas sp. 107F]
          Length = 321

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 181/323 (56%), Positives = 239/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+F SQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFFSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|4514467|dbj|BAA75432.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 304

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 165/307 (53%), Positives = 210/307 (68%), Gaps = 4/307 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I R G I+E  + +G    PL V G   N TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDT-NRTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TRVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--NAEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            FV Y++  K  L            + I++++A++WND Y ENV CFTNNIPQKDGGTHL
Sbjct: 118 EFVKYINEGKTHLNDIFHFTAAQADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y++     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVS
Sbjct: 178 AGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA 
Sbjct: 238 SEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAG 297

Query: 410 LPGKLAD 416
           LPGKLAD
Sbjct: 298 LPGKLAD 304


>gi|308152467|dbj|BAJ22212.1| DNA gyrase subunit B [Dietzia sp. Y3]
          Length = 445

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 161/448 (35%), Positives = 234/448 (52%), Gaps = 59/448 (13%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++  F   +    LV  G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQDFNMAVP-EELVDAGPAE-GTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F   + IF   ++++D +  RL+E++FLN  + I+L D+RS   +   +      E
Sbjct: 59  TRVRFWADASIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDAIADSE 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG------------YHENVLCFTN 278
              S               +   R  +   +                   Y + +  +  
Sbjct: 119 GRGSDSAPGSDEGSDIEHAVDAERAFVEGAVETTEPAEPVKVRERKRTFHYPDGLKDYVT 178

Query: 279 NIPQKDGGTHL--------------------------------------------SGLRS 294
            I +     H                                              G R+
Sbjct: 179 AINKSKTAIHQTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRA 238

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALT  +  Y       K+   ++ GDD REG  +V+S K+ DP+F  QTK KL ++EV+ 
Sbjct: 239 ALTGLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTKLGNTEVKG 298

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            ++  V++ +  W E +P EA++IV K + +S  R AAR+AR++ RRK   DI  LPGKL
Sbjct: 299 FIQRQVSEHVGHWFEANPAEARVIVNKGIASSQARVAARKAREMVRRKSATDIGGLPGKL 358

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R DK+L + E+
Sbjct: 359 ADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLKNTEV 418

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIII 502
             +ITALGTGI ++ FD++KLRYHKI++
Sbjct: 419 QAIITALGTGIHEE-FDLDKLRYHKIVL 445


>gi|4514501|dbj|BAA75449.1| DNA gyrase subunit B [Acinetobacter radioresistens]
          Length = 303

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 166/306 (54%), Positives = 213/306 (69%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L ++R G I+E  + +G+   PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQTE-RTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TKVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--NLEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKNHLNEIFHFTTQAENGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|226326914|ref|ZP_03802432.1| hypothetical protein PROPEN_00774 [Proteus penneri ATCC 35198]
 gi|225204751|gb|EEG87105.1| hypothetical protein PROPEN_00774 [Proteus penneri ATCC 35198]
          Length = 225

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 8/225 (3%)

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNF 644
           ++  + D     K+I+     +  + +   V       E   +        S L NRLN 
Sbjct: 1   MKKLVVDYHAAHKIIRRMERIYPLSMLNSLVYHSTLTEEDLSDKTKVEEWMSGLVNRLNN 60

Query: 645 IAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699
             E+S       + +      + +++    G+   + L+   I S   +      + I  
Sbjct: 61  AEEQSSTYSYTITQNDENRLFEPVLRIRTYGIDTDYKLDYDFIHSSEYQRITHLGDIIGN 120

Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759
                  +     +  I+     L+ +    R+G+++QRYKGLGEMN  QLWETT+NPDT
Sbjct: 121 LIEEGAFIERGERRQAISSFEEALEWLTKESRRGLAVQRYKGLGEMNPEQLWETTMNPDT 180

Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803
           R +++V + DA   D+LF+ LMGD VEPRR FI+EN+L  + +DI
Sbjct: 181 RRMMQVTVKDAIATDELFTTLMGDSVEPRRAFIEENALKAANIDI 225


>gi|285026249|dbj|BAI67853.1| DNA gyrase B [Rubritalea sp. MN1-1030]
          Length = 360

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 166/360 (46%), Positives = 225/360 (62%), Gaps = 15/360 (4%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD-FNY 189
           S W +  + R+G +Y++ F  G    PL V G A +  TGT++TF P + IF     F +
Sbjct: 1   SDWFRAEVNRDGKVYQIQFERGKTTEPLEVVGEAPSSKTGTKITFFPDATIFVDTIEFEF 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLREL+FLN  + I L D+   + R+ T FY  GIE FV  L  +K  + +SP+ 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDENPEKSRKETFFYARGIEEFVEQLGVNKTTVHESPVV 120

Query: 250 IQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + G R            D++  D+  ++ND Y +N+LC+ N+IP  DGGTHL+G R ALT
Sbjct: 121 LTGKRKVEIDYDGKTMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGFRGALT 180

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y + +   K    S+ GDD REG   V+S+KMP+PRFSSQTK+KLV++E+  VV 
Sbjct: 181 RSINQYAKANKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEIEGVVS 240

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V +GL  + EE+P  AK+I+ K +  +     A R    T RK V+    LPGKLADC
Sbjct: 241 SIVYEGLQEYFEENPNLAKMIIDKAV-NAARAREAARKARETVRKSVMSGGGLPGKLADC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERDP KSE+++VEGDSAGGSAK GR+R  QAILPLRGK++NVE+AR  K L ++EI  +
Sbjct: 300 SERDPAKSEIYIVEGDSAGGSAKSGRNRTTQAILPLRGKVINVEKARLHKALQNREIQAM 359


>gi|62084088|dbj|BAD91451.1| DNA gyrase subunit B [Streptococcus uberis]
 gi|110225014|dbj|BAE97496.1| DNA gyrase subunit B [Streptococcus uberis]
          Length = 300

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/300 (43%), Positives = 195/300 (65%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + GNI+   F  G++ + L + GS  + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGNIHFQEFKRGVVVDDLTIIGST-DLTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+   +FNYD L  R++EL+FLN  ++IS+ DKR    +     Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETVEFNYDKLAKRIQELAFLNRGLRISIADKRKGIEQNHDFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V YL+  K  ++++PI   G  D I++++AM++  GYHENV+ F NNI   +GGTH 
Sbjct: 120 SSYVEYLNEKKDVIIETPIYTDGEMDGIAVEVAMQYTTGYHENVMSFANNINTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++    +L E+P  A+ IV K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|119226172|dbj|BAF41065.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 449

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 161/452 (35%), Positives = 234/452 (51%), Gaps = 63/452 (13%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++  F   +    LV  G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVP-AELVDAGPAE-GTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F     IF   ++++D +  RL+E++FLN  + I+L D+R    +   +      E
Sbjct: 59  TRVRFWADPTIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAIADSE 118

Query: 231 AFVSYLDRHKKPLMQ-------SPIRIQGSRDNISIDL-------------AMRWNDG-- 268
              +                       +G++   +++                 + DG  
Sbjct: 119 GSGAEAAPGSDEGSDLAHAVDAEQAFAEGAQAADAVEATPVEPVKVRERKRTFHYPDGLK 178

Query: 269 -YHENVLCFTNNIPQK------DGGTHLSGLRSAL------------------------- 296
            Y   +     +I          G  H   +                             
Sbjct: 179 DYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEGGTHEE 238

Query: 297 ------TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
                 T  +  Y  +    K+   ++ GDD REG  +VLS K+ DP+F  QTK KL ++
Sbjct: 239 GFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKTKLGNT 298

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  V+  V++ +  W E +P EAK+I+ K + +S  R AAR+AR++ RRK   DI  L
Sbjct: 299 EVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSATDIGGL 358

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R DK+L 
Sbjct: 359 PGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLK 418

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           + E+  +ITALGTGI ++ FDI+KLRYHKI++
Sbjct: 419 NAEVQAIITALGTGIHEE-FDIDKLRYHKIVL 449


>gi|285013600|gb|ADC32796.1| gyrase subunit B [Xanthomonas hortorum pv. vitians]
 gi|285013606|gb|ADC32799.1| gyrase subunit B [Xanthomonas hortorum pv. vitians]
          Length = 286

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 143/286 (50%), Gaps = 7/286 (2%)

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD
Sbjct: 1   RYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKD 60

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           + +L  YL + ++     +    +  I+   L   +      ++ I      +D   +  
Sbjct: 61  DAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTGANEAIARNAHRYDPALMTA 120

Query: 616 AVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD--ILVKRIA 668
            +     +      E DQ   +     + NR      + +  +  + +++   ++  R  
Sbjct: 121 LIDLPPLDVAKLQAEGDQHPTLDKLQAVLNRGTLGTARYQLRFDPATDSTSATLVAVRKH 180

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            G +   VL   +  S   +  R  +  ++        ++       IT        +  
Sbjct: 181 MGEEFTQVLPMGAFESGELRPLREVALALDGLVREGAQIVRGNKTHPITSFAQAHAWLLE 240

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
             +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD
Sbjct: 241 EAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAAD 286


>gi|58415310|emb|CAH04913.1| DNA gyrase subunit B [Microbacterium imperiale]
          Length = 377

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 156/379 (41%), Positives = 232/379 (61%), Gaps = 21/379 (5%)

Query: 137 LRIKREGNIYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHR 195
           + ++R+G+++  SF   G+   PL   G A ++TGT +TF P  DIF   +F+YDTL+ R
Sbjct: 1   VEVRRQGHVWRQSFRTGGVPQAPLEK-GEATDETGTTITFWPDPDIFETVEFDYDTLRTR 59

Query: 196 LRELSFLNSSVQISLIDKRSPEPR--------------EITMFYKGGIEAFVSY--LDRH 239
            ++ +FLN  ++I+L D+R                        Y+ G+  +V Y    R 
Sbjct: 60  FQQQAFLNKGLRIALDDQRPDSAYVVDLEDGTSENRRPHDDFLYERGLVDYVEYLNKLRK 119

Query: 240 KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            + +    I ++      +IS++LAM+W   Y ENV  F N I   +GGTH  G R+ALT
Sbjct: 120 TEVVNDEIIEVESEDTVRHISLELAMQWTTSYTENVFTFANTINTHEGGTHEEGFRAALT 179

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
            ++ +Y  +    K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E ++ V+
Sbjct: 180 TKVNAYAREKGLLKEKDDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQ 239

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D L+ WL+ +P +AK ++ K +DA+  R AAR+AR+  RRK V + AS+P KL DC
Sbjct: 240 KIVGDQLTDWLDRNPAQAKRVIMKAVDAATARLAARKARETARRKSVFESASMPDKLKDC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           + +DP  SE+FLVEGDSAGGSA +GR  E QAIL LRGK+LNVE+AR D+ L + EI  +
Sbjct: 300 TSKDPSISEIFLVEGDSAGGSAVRGRDPETQAILSLRGKVLNVEKARLDRALGNNEIQAI 359

Query: 478 ITALGTGIGQDSFDINKLR 496
           I+A GTGIG+D F + K R
Sbjct: 360 ISAFGTGIGED-FSVEKAR 377


>gi|328926666|gb|AEB66891.1| DNA gyrase subunit B [Pseudomonas flectens]
          Length = 302

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 160/304 (52%), Positives = 223/304 (73%), Gaps = 4/304 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  L+L I+REG +++ ++++G+   PL V G     +GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELTIRREGKVHQQTYVHGVPQQPLAVVGETE-ASGT 59

Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           +V F PS + F+   DF YD L  RLRELSFLNS V I L DKR+ +       Y+GGI+
Sbjct: 60  QVRFWPSYETFTNVIDFEYDILAKRLRELSFLNSGVSIRLTDKRTDKS--DHYHYEGGIK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 118 AFVEYLNKNKTPIHSHVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+S VES +N+ L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG L  + +
Sbjct: 238 EVKSAVESQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALGSSRI 297

Query: 411 PGKL 414
            G++
Sbjct: 298 TGQI 301


>gi|188090360|gb|ACD49414.1| gyrase subunit B [Xanthomonas axonopodis pv. phaseoli]
          Length = 288

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDA VDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDAHVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|37931121|gb|AAP69921.1| DNA gyrase subunit beta [Aeromonas sp. P1W-98]
          Length = 321

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 240/323 (74%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPHAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|4514459|dbj|BAA75428.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 212/306 (69%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I R G+I++  + +G    PL V G+  + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPVYPLTVVGNT-DTTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--HAEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y+++ K  L         + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINQGKTHLNDIFHFTVQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|164456733|dbj|BAF97859.1| gyrase B subunit [Vibrio tapetis]
          Length = 278

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 148/280 (52%), Positives = 200/280 (71%), Gaps = 3/280 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  + L I R+G+ ++ ++ +G  D PL  TG     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGATGDTE-KTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS + F+   F+Y+ L  RLRELSFLNS V I LID+R  E +     Y+GG +
Sbjct: 60  TIIRFWPSEETFTNVHFHYEILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFCYEGGTQ 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K P++Q        R++ IS+++AM+WNDGY EN+ CFTNNIPQ+DGGTHL
Sbjct: 119 AFVDYLNTNKTPIIQKVFHFDYEREDGISVEVAMQWNDGYQENIFCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           SEV+S VES + + LS +L E+P EAKI+  K++DA+  R
Sbjct: 239 SEVKSAVESAMGEKLSEFLIENPSEAKIVCSKIIDAARAR 278


>gi|285026251|dbj|BAI67854.1| DNA gyrase B [Rubritalea sp. MN1-1054]
 gi|285026253|dbj|BAI67855.1| DNA gyrase B [Rubritalea sp. MN1-1042]
 gi|285026255|dbj|BAI67856.1| DNA gyrase B [Rubritalea sp. MN1-1006]
          Length = 360

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 166/360 (46%), Positives = 225/360 (62%), Gaps = 15/360 (4%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD-FNY 189
           S W +  + R+G +Y++ F  G    PL V G A +  TGT++TF P + IF     F +
Sbjct: 1   SDWFRAEVTRDGKVYQIQFERGKTTEPLEVVGEAPSSKTGTKITFFPDATIFVDTIEFEF 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLREL+FLN  + I L D+   + R+ T FY  GIE FV  L  +K  + +SP+ 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDENPEKSRKETFFYARGIEEFVEQLGVNKTTVHESPVV 120

Query: 250 IQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + G R            D++  D+  ++ND Y +N+LC+ N+IP  DGGTHL+G R ALT
Sbjct: 121 LTGKRKVEIDYDGKTMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGFRGALT 180

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y + +   K    S+ GDD REG   V+S+KMP+PRFSSQTK+KLV++E+  VV 
Sbjct: 181 RSINQYAKANKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEIEGVVS 240

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V +GL  + EE+P  AK+I+ K +  +     A R    T RK V+    LPGKLADC
Sbjct: 241 SIVYEGLQEYFEENPNLAKMIIDKAV-NAARAREAARKARETVRKSVMSGGGLPGKLADC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERDP KSE+++VEGDSAGGSAK GR+R  QAILPLRGK++NVE+AR  K L ++EI  +
Sbjct: 300 SERDPAKSEIYIVEGDSAGGSAKSGRNRTTQAILPLRGKVINVEKARLHKALQNREIQAM 359


>gi|328349723|emb|CBY89169.1| GyrB protein [Flavobacterium sp. R-38477]
          Length = 336

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 149/337 (44%), Positives = 213/337 (63%), Gaps = 6/337 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187
           NALS  ++  + +EG IYE  +  G    P+   G   +  GT  TF P + IF+    F
Sbjct: 1   NALSVHMRSTVFKEGKIYEQEYERGKAIYPVKQIGET-DKRGTRQTFYPDNTIFTQTTEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHKKPL 243
           +YDTL  R+RELS+LN  + I+  DKR      E R        G++ ++ YLD +++P+
Sbjct: 60  SYDTLSARMRELSYLNKGITITFTDKREADDKGEFRTEVFHSDEGLKEYIRYLDGNREPI 119

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +   I +   +  I +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y
Sbjct: 120 ISHVISMDHDKGEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKY 179

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            + S    K K  + GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V D 
Sbjct: 180 ADASGMLDKLKFDISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVGDM 239

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           + A+LEE+P +A+IIV+KV+ A+  R AA++AR++ +RK V+    LPGKL+DCSE+DP 
Sbjct: 240 IEAYLEENPNDARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPA 299

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           K E++LVEGDSAGG+AKQGR R  QAILPLRGKILNV
Sbjct: 300 KCEVYLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 336


>gi|314909561|gb|ADT62515.1| DNA gyrase subunit beta [Mariprofundus sp. GSB2]
          Length = 311

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 180/314 (57%), Positives = 233/314 (74%), Gaps = 3/314 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+R+GN++   +  G    PL V G+A   +GTEV FL
Sbjct: 1   SGGLHGVGVSVVNALSETLELVIRRDGNVHYQKYCLGEPQEPLKVIGTAK-GSGTEVRFL 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + FS ++ ++D L  RLRELSFLNS V I +ID+R+    ++   Y+GGI AFV +L
Sbjct: 60  PSLETFSHRNMSFDILSTRLRELSFLNSGVHIEVIDERTD--NKVVFAYEGGISAFVQHL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +R + PL    + +   +D +S++L+M+W D Y E+V CFTNNIPQKDGGTHL+GLR AL
Sbjct: 118 NRTRTPLHDQCVAMGAEKDGVSVELSMQWTDSYQEHVFCFTNNIPQKDGGTHLAGLRGAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y   +   KK K S+ G+DCREG T+VLS+K+PDP+FSSQTKEKLVSSEVR +V
Sbjct: 178 TRTVNNYATSNGLMKKLKVSLTGEDCREGLTAVLSVKVPDPKFSSQTKEKLVSSEVRPIV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  VN+ L+ W EE+P EA+ IV KV +A+  R+AAR+ARDLTRRKG LDI+SLPGKLAD
Sbjct: 238 EGIVNEKLAEWFEENPKEARRIVGKVSEAATAREAARKARDLTRRKGALDISSLPGKLAD 297

Query: 417 CSERDPKKSELFLV 430
           C E+DP  SEL+LV
Sbjct: 298 CQEKDPALSELYLV 311


>gi|124300714|dbj|BAF45865.1| gyrase B [Erwinia amylovora]
 gi|124300716|dbj|BAF45866.1| gyrase B [Erwinia amylovora]
 gi|124300718|dbj|BAF45867.1| gyrase B [Erwinia amylovora]
 gi|124300720|dbj|BAF45868.1| gyrase B [Erwinia amylovora]
 gi|124300722|dbj|BAF45869.1| gyrase B [Erwinia pyrifoliae]
 gi|124300753|dbj|BAF45874.1| gyrase B [Erwinia amylovora]
 gi|124300755|dbj|BAF45875.1| gyrase B [Erwinia amylovora]
 gi|124300757|dbj|BAF45876.1| gyrase B [Erwinia amylovora]
 gi|124300759|dbj|BAF45877.1| gyrase B [Erwinia amylovora]
 gi|124300761|dbj|BAF45878.1| gyrase B [Erwinia amylovora]
          Length = 333

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 192/336 (57%), Positives = 255/336 (75%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  SE++LVEGDSAGGS
Sbjct: 238 VGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEIYLVEGDSAGGS 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+
Sbjct: 298 AKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEV 333


>gi|164456653|dbj|BAF97819.1| gyrase B subunit [Vibrio crassostreae]
          Length = 273

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 146/275 (53%), Positives = 198/275 (72%), Gaps = 3/275 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI+AF
Sbjct: 60  IRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFEYEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+G
Sbjct: 119 VEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           V+S VES + + LS +L E+P EAK +  K++DA+
Sbjct: 239 VKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAA 273


>gi|171702712|dbj|BAG16324.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-5]
          Length = 356

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 159/351 (45%), Positives = 222/351 (63%), Gaps = 6/351 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G IYE  +  G    P+   G   +  GT VTF P   IF+    +NYDTL  R+RELSF
Sbjct: 1   GKIYEQEYERGKAMYPVKQVG-TTDKRGTMVTFHPDKTIFTQTIEYNYDTLAARMRELSF 59

Query: 202 LNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+L DKR    + E        K G++ FV +LD  ++P++   I ++  +  I
Sbjct: 60  LNKGITITLTDKRRTKDNGEYEGEVFHSKEGLKEFVKFLDMGREPIISHVISMEHEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R  LTR +  Y + S    K K  +
Sbjct: 120 PVEVALVYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ L  +LEE+P +AKI
Sbjct: 180 AGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPNDAKI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK VL    LPGKL+DCSE+DP K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           +AKQGR R  QAI+PLRGKILNVE+A   K+  ++EI  + TALG  IG +
Sbjct: 300 TAKQGRDRNFQAIMPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTE 350


>gi|157311305|ref|YP_001469348.1| DNA topoisomerase II large subunit [Enterobacteria phage Phi1]
 gi|149380509|gb|ABR24514.1| gp60+39 topoisomerase II large subunit [Enterobacteria phage Phi1]
          Length = 607

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 149/610 (24%), Positives = 248/610 (40%), Gaps = 66/610 (10%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES----------------GLHHMIYEVLDNAIDES 56
              +IL   + V KR  MYIG T  E                 GL  +I E++DN++DE+
Sbjct: 2   SEFRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEA 61

Query: 57  LE---GYADIITVTLNMDGSCTVSDNGRGIP---TDLHKEEGISAAEVIMTRLHAGGKFN 110
           +     +A++I+V +  +   TV+DNGRGIP       +   I       TR  AG  F+
Sbjct: 62  IRTNFEFANVISVDI-QNNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAWTRTKAGSNFD 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             + +++ G++GVG S+ N  S W             +   NG     +  +       G
Sbjct: 121 DTN-RLTQGMNGVGSSLSNFFSDWFTGVTCDGETEMTVQCTNG--AENITWSSKPSKLKG 177

Query: 171 TEVTFLPSSDIFSVQDFN---YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T+VTF P  D F     +    D +  RL+ LS +   +      KR             
Sbjct: 178 TKVTFCPDFDHFEGYMMDNSVLDIVHDRLQSLSVIFPKITFKFNGKRI------------ 225

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                VS    + K     P  I+    ++++  A+   +G     + F N +  K+GGT
Sbjct: 226 -----VSKFKDYAKLYNDDPFVIEDKNFSLALVPAV---EGEGFKSVSFANGLFTKNGGT 277

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEK 346
           H+  +   L  +I   ++K       K  V     + G T +L ++ +P+ RF SQTKE+
Sbjct: 278 HVDYVTDDLCEEIVKRIKKE-----YKVDVTKAAVKSGLTCILIVRELPNLRFDSQTKER 332

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +            D     L +   + + I+  ++   + R  A      T+      
Sbjct: 333 LTNPTGD---IKRHIDLDFKKLAKVIAKKENIIMPIIAVVLARKEAADKAAATKAAKAAK 389

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            A +   +         ++ LFL EGDSA       R ++     PLRGK L        
Sbjct: 390 RAKVAKHVKANLIGTDAETTLFLTEGDSAINYLISVRDQDLHGGFPLRGKTLTTWEQPEA 449

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG-AHIRTLLLTFFFRQM 525
           K++ + EI  ++   G   G D   +  ++Y  I IMTDAD DG   I+  L++FF R  
Sbjct: 450 KIVKNAEIFNIMAITGLQFGVD--ALEVMQYKNIAIMTDADTDGIGSIKPSLISFFAR-W 506

Query: 526 PSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           P L  +G +  IK P+      +G  +++  D E  E+     ++      +      ++
Sbjct: 507 PELFEDGRIRFIKTPIIIAEPKKGDDVRWYYDLEDFEN--DRDNIKGYSIRYIKGLASLT 564

Query: 584 KNDLRNFIDD 593
           ++D    I+D
Sbjct: 565 ESDYHRVIND 574


>gi|148762421|dbj|BAF63912.1| DNA gyrase subunit B [Virgibacillus proomii]
          Length = 328

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 144/332 (43%), Positives = 202/332 (60%), Gaps = 9/332 (2%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTE 172
           YKVSGGLHGVG SVVNALS WL + I R+G+IY   F N G     L   G     TGT 
Sbjct: 1   YKVSGGLHGVGASVVNALSEWLDVTIHRDGHIYFQRFENGGKPVGSLEKKGPTK-KTGTI 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P   IF+   +N++TL  RLRE +FL   + I L D R+   +     Y  G++AF
Sbjct: 60  IHFKPDPTIFNTTVYNFETLSERLREAAFLLKGLTIQLQDLRN--NQTEEYQYPEGLKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+  K  L       +G +  I +D A ++NDGY E++L F N++  KDGGTH SG 
Sbjct: 118 VHYLNEEKDTLHPVVA-FEGVQQGIEVDFAFQFNDGYAESMLSFVNHVRTKDGGTHESGA 176

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSS 350
           R+A+TR    Y  +    K+  +++ G D REGFTS++S+++P+   +F  QTK KL + 
Sbjct: 177 RTAITRTFNDYARRIGLLKEKDKNLEGSDIREGFTSIVSVRVPEDKLQFEGQTKGKLGTP 236

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIA 408
           E RSVV++ V++ LS +LEE+   + +++KK + A   R+AAR+AR+   T RK      
Sbjct: 237 EARSVVDAVVSEKLSYFLEENSDVSNLLIKKAIKAKEAREAARKAREDARTGRKRRKKDT 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
            L GKL     ++PK++EL+LVEGDSAGGSAK
Sbjct: 297 ILSGKLTPAQSKNPKRNELYLVEGDSAGGSAK 328


>gi|321401282|gb|ADW83052.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401284|gb|ADW83053.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401286|gb|ADW83054.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401288|gb|ADW83055.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401294|gb|ADW83058.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401296|gb|ADW83059.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401298|gb|ADW83060.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401300|gb|ADW83061.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401302|gb|ADW83062.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401306|gb|ADW83064.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401308|gb|ADW83065.1| DNA gyrase subunit B [Legionella pneumophila]
          Length = 208

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 155/210 (73%), Gaps = 3/210 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L +
Sbjct: 1   GRGIPVDIHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLV 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G +YE  + +G+ ++P+  TG A N TGT++ F PS++ FS  +F+YD L  RLREL
Sbjct: 61  RRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAETFSNIEFHYDILAKRLREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           S+LNS V I L D+R+ +    T  Y+GGI+AFV +L+++K P+      +   +D I I
Sbjct: 120 SYLNSGVCIHLFDERTQKK--DTFHYEGGIKAFVEHLNKNKTPVHPVVFSMTSEKDGIVI 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +LAM+WNDGY E + CFTNNIPQ+DGGTH+
Sbjct: 178 ELAMQWNDGYQETIFCFTNNIPQRDGGTHM 207


>gi|19909717|dbj|BAB87054.1| DNA gyrase subunit B [Variovorax paradoxus]
          Length = 276

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 130/278 (46%), Positives = 177/278 (63%), Gaps = 30/278 (10%)

Query: 64  ITVTLNMDGSCTVSDNGRGIPT----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119
           I VT++ D S +V+DNGRGIPT    D   E   SAAE+ +T LHAGGKFNQ SYKVSGG
Sbjct: 1   IVVTIHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGG 60

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN------------GILDNPLVVTGSAGN 167
           LHGVGVS VNALS  L+L ++REG I+E+ F              G+  +P+ + G   +
Sbjct: 61  LHGVGVSCVNALSVMLRLVVRREGKIHELEFSRGFVQDRLLETVNGVEVSPMKIIGDT-D 119

Query: 168 DTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             GTEV FLP ++IF   + F+Y+ L  RLRELSFLN+ V+I L D+RS +         
Sbjct: 120 KRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERSGKE--DDFSGA 177

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCF 276
           GG+  FV ++++ K  L  +    +G +           +I +++AM+WN GY+E VLCF
Sbjct: 178 GGVRGFVEFINKGKTVLHPNSFYAEGEKPADTYGGIPGTHIGVEVAMQWNSGYNEQVLCF 237

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           TNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K
Sbjct: 238 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENELAKKAK 275


>gi|211927049|dbj|BAG82777.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 445

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 160/448 (35%), Positives = 233/448 (52%), Gaps = 59/448 (13%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++ +F   +    LV  G A   TG
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQNFNMAVP-EELVDAGPAE-GTG 58

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F     IF   ++++D +  RL+E++FLN  + I+L D+RS   +   +      E
Sbjct: 59  TRVRFWADGSIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDAIADSE 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG------------YHENVLCFTN 278
              S               +   +  +   +                   Y + +  +  
Sbjct: 119 GRGSDSAPGSDEGSDIEHAVDAEQAFVEGAVETTEPAEPVKVRERKRTFHYPDGLKDYVT 178

Query: 279 NIPQKDGGTHL--------------------------------------------SGLRS 294
            I +     H                                              G R+
Sbjct: 179 AINKSKTAIHQTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRA 238

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALT  +  Y       K+   ++ GDD REG  +V+S K+ DP+F  QTK KL ++EV+ 
Sbjct: 239 ALTSLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTKLGNTEVKG 298

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            ++  V++ +  W E +P EA++IV K + +S  R AAR+AR++ RRK   DI  LPGKL
Sbjct: 299 FIQRQVSEHVGHWFEANPAEARVIVNKGIASSQARVAARKAREMVRRKSATDIGGLPGKL 358

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           ADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R DK+L + E+
Sbjct: 359 ADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLKNTEV 418

Query: 475 GTLITALGTGIGQDSFDINKLRYHKIII 502
             +ITALGTGI ++ FD+ KLRYHKI++
Sbjct: 419 QAIITALGTGIHEE-FDLEKLRYHKIVL 445


>gi|110225016|dbj|BAE97497.1| DNA gyrase subunit B [Streptococcus intermedius]
          Length = 300

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 195/300 (65%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGQVVADLKIIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLEQTKDYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  + ++PI   G  D+I++++A+++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 ASYVQYINENKDVIFENPIYTDGEMDDITVEVAIQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  AK I++K + AS VR AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSDFLLENPAVAKKIIEKGILASKVRIAAKRAREVTRKKSGLEISN 299


>gi|37931147|gb|AAP69934.1| DNA gyrase subunit beta [Aeromonas sp. 22]
          Length = 321

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 181/323 (56%), Positives = 237/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+ DP+FSSQTK KLVSSEV + VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVRDPKFSSQTKVKLVSSEVNTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|110224982|dbj|BAE97480.1| DNA gyrase subunit B [Streptococcus hyovaginalis]
          Length = 300

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 123/300 (41%), Positives = 189/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +++ + G IY   +  G++ + L V G      G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVHKNGQIYYQEYQRGVVVDDLTVIGETDLQ-G 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  DIF+    ++Y  L  R++EL+FLN  ++IS+ DKR  +       Y+GGI
Sbjct: 60  TTVHFTPDPDIFTETTEYDYAKLAKRVQELAFLNKGLRISITDKREGKEVSQEFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K+ + ++PI   G  + I++++AM++  GYHE ++ F NNI   +GGTH 
Sbjct: 120 ASYVDYINENKETIFETPIFTDGEMEGITVEVAMQYTTGYHETIMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  ++   K+   ++ GDD REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARQNNILKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSRFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|285013602|gb|ADC32797.1| gyrase subunit B [Xanthomonas axonopodis pv. vitians]
          Length = 285

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 140/285 (49%), Gaps = 7/285 (2%)

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD
Sbjct: 1   RYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKD 60

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           + +L  YL + ++     +    +  I+   L   +      ++ I      +D   +  
Sbjct: 61  DAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTA 120

Query: 616 AVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIAR 669
            +     +      E DQ   +     + NR      + +  +  GS N    LV     
Sbjct: 121 LIDLPPLDVEKLQAEGDQHRTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRRH 180

Query: 670 -GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            G +   VL   +  S   +  R  S  + +       ++       IT        +  
Sbjct: 181 MGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLLD 240

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  A
Sbjct: 241 EAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAA 285


>gi|322875020|gb|ADX20833.1| DNA gyrase subunit B [Fluoribacter dumoffii]
          Length = 208

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 156/210 (74%), Gaps = 3/210 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L +
Sbjct: 1   GRGIPVDIHKEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTV 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G I+E  + NG+ + P+V TG A   TGT++ F PS++ FS  +F+YD L  RLREL
Sbjct: 61  RRHGKIHEQHYRNGVPEAPMVETGDAT-TTGTQIWFKPSAETFSNIEFHYDILAKRLREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           S+LNS V I L D+RS   R+ T  Y+GGI+AFV +L+++K  ++ +   +   +DNI +
Sbjct: 120 SYLNSGVCIHLFDERS--QRQDTFHYEGGIKAFVEHLNKNKNVIIPTVFSMSAEKDNIVV 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +L+M+WND Y E + CFTNNIPQ+DGGTH+
Sbjct: 178 ELSMQWNDSYQETLYCFTNNIPQRDGGTHM 207


>gi|238694884|ref|YP_002922078.1| topoisomerase II large subunit [Enterobacteria phage JSE]
 gi|220029020|gb|ACL77955.1| topoisomerase II large subunit [Enterobacteria phage JSE]
          Length = 607

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 149/610 (24%), Positives = 248/610 (40%), Gaps = 66/610 (10%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES----------------GLHHMIYEVLDNAIDES 56
              +IL   + V KR  MYIG T  E                 GL  +I E++DN++DE+
Sbjct: 2   SEFRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEA 61

Query: 57  LE---GYADIITVTLNMDGSCTVSDNGRGIP---TDLHKEEGISAAEVIMTRLHAGGKFN 110
           +     +A++I+V +  +   TV+DNGRGIP       +   I       TR  AG  F+
Sbjct: 62  IRTNFEFANVISVDI-QNNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAWTRTKAGSNFD 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             + +++ G++GVG S+ N  S W             +   NG     +  +       G
Sbjct: 121 DTN-RLTQGMNGVGSSLSNFFSDWFTGVTCDGETEMTVQCTNG--AENITWSSKPSKLKG 177

Query: 171 TEVTFLPSSDIFSVQDFN---YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T+VTF P  D F     +    D +  RL+ LS +   +      KR             
Sbjct: 178 TKVTFCPDFDHFEGYMMDNSVLDIVHDRLQSLSVIFPKITFKFNGKRI------------ 225

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                VS    + K     P  I+    ++++  A+   +G     + F N +  K+GGT
Sbjct: 226 -----VSKFKDYAKLYNDDPFVIEDKNFSLALVPAV---EGEGFKSVSFANGLFTKNGGT 277

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEK 346
           H+  +   L  +I   ++K       K  V     + G T +L ++ +P+ RF SQTKE+
Sbjct: 278 HVDYVTDDLCEEIVKRIKKE-----YKVDVTKAAVKSGLTCILIVRELPNLRFDSQTKER 332

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +            D     L +   + + I+  ++   + R  A      T+      
Sbjct: 333 LTNPTGD---IKRHIDLDFKKLAKVIAKKENIIMPIIAVVLARKEAADKAAATKAAKAAK 389

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            A +   +         ++ LFL EGDSA       R ++     PLRGK L        
Sbjct: 390 RAKVAKHVKANLIGTDAETTLFLTEGDSAINYLISVRDQDLHGGFPLRGKTLTTWEQPEA 449

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG-AHIRTLLLTFFFRQM 525
           K++ + EI  ++   G   G D   +  ++Y  I IMTDAD DG   I+  L++FF R  
Sbjct: 450 KIVKNAEIFNIMAITGLQFGVD--ALEVMQYKNIAIMTDADTDGIGSIKPSLISFFAR-W 506

Query: 526 PSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           P L  +G +  IK P+      +G  +++  D E  E+     ++      +      ++
Sbjct: 507 PELFEDGRIRFIKTPIIIAEPKKGDDVRWYYDLEDFEN--DRDNIKGYNIRYIKGLASLT 564

Query: 584 KNDLRNFIDD 593
           ++D    I+D
Sbjct: 565 ESDYHRVIND 574


>gi|297850918|ref|XP_002893340.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339182|gb|EFH69599.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 951

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 130/663 (19%), Positives = 232/663 (34%), Gaps = 81/663 (12%)

Query: 22  DAVKKRPSMYIGD--------------------TDGESGLHHMIYEVLDNAIDE-----S 56
           + +  RP  YIG                     T    GL  +  E+L NA+D      S
Sbjct: 9   EHILLRPDAYIGSIKEHTQPLWVFEKGEMVYRRTTYVPGLCKIFEEILMNAVDNKRTDPS 68

Query: 57  LEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115
           +    D I V +++D  + +V +NG G+P    +E+ +   E++   L     F+     
Sbjct: 69  M----DSIIVKIDVDQNTISVRNNGNGVPVAQLEEKNVYIPELVFGCLLTSSHFDDN--- 121

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYE-MSFINGILDNPLVVTGSA-GNDTGTEV 173
            +GG  G G  + N  S+   +        +E + F   + +    V  +    D  TEV
Sbjct: 122 TTGGRTGYGAKLTNIFSTRFTIETNLNRYEHEKIVFTRNMKEKSTPVVTTCESIDKWTEV 181

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           TF P  ++F +     DT+    + +         + + +        T+        +V
Sbjct: 182 TFEPDLEMFHISKIGKDTVALMEKRIV-----ECAACLGETVKVTINDTLLEVNSFNDYV 236

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
                          R+   + N   ++ +  +    + +  F N+I    GG H+  + 
Sbjct: 237 DLYLGANSSRNDPLPRMTV-KVNDKWEICVSLSKDKFQQI-SFVNSIATTKGGPHVDYVT 294

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           + +   IT+ V+K     K +        ++     ++  +  P F    KE L+  E  
Sbjct: 295 TQIIDFITNSVKKKMNYAKVETDN----VKKHMWVFVNCVIDHPVFD-WLKETLIFPE-S 348

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S              +E+P   K ++            ++  +DL      L  A+  G 
Sbjct: 349 SFGSKCKLSKDILKKDENPGMVKQLLSWA--------TSKHGKDLDLGIEKLVDANKAGG 400

Query: 414 LADCSERDPKKSELFLVEGDSA------GGSAKQGRSRENQAILPLRGKILNVERARFDK 467
                  D K   L L EGDSA      G S     SRE   + PL+GK++NV  A  DK
Sbjct: 401 ------EDSKLCTLILTEGDSAKTLVMTGLSFLSDESRELYGVFPLQGKLMNVRGASEDK 454

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           +  +++I  L T LG   G++      LRY  ++IMTD D DG HI+ L++  F    P 
Sbjct: 455 INKNKKIQQLKTILGLENGKE---YGNLRYGHVMIMTDQDHDGFHIKGLIINLFHVMWPE 511

Query: 528 LIHNG--FLYIIKPPLYGITR-GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
           L+     FL     P+   T      +       L+ +  N   ++       +   +  
Sbjct: 512 LLERDPSFLCEFVTPIVKATHEDGKKETFFSMPELKKWKNNLLPNDIPRWTYKTYKGLG- 570

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644
                      +     ++   +      +        +   + +      + L N    
Sbjct: 571 ------TSSDEEAQTYFENISIHKRDFLWQNEDDGKAIDLAFNSDKPEDRRTWLKNYTFI 624

Query: 645 IAE 647
             E
Sbjct: 625 NKE 627


>gi|321117370|dbj|BAJ72162.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 181/336 (53%), Positives = 243/336 (72%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGFSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ LS +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLSEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARGREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASPEG 333


>gi|4514435|dbj|BAA75416.1| DNA gyrase subunit B [Acinetobacter baumannii]
 gi|4514437|dbj|BAA75417.1| DNA gyrase subunit B [Acinetobacter baumannii]
          Length = 303

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 166/306 (54%), Positives = 212/306 (69%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSAETFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKNHLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|30793720|gb|AAM52922.1| DNA gyrase subunit beta [Aeromonas salmonicida subsp.
           pectinolytica]
          Length = 321

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 240/323 (74%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPGAPLKQIGDSNSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|33620688|ref|NP_891577.1| topoisomerase II large subunit [Enterobacteria phage RB49]
 gi|33438558|gb|AAL15132.2| topoisomerase II large subunit [Enterobacteria phage RB49]
          Length = 607

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 149/610 (24%), Positives = 248/610 (40%), Gaps = 66/610 (10%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGES----------------GLHHMIYEVLDNAIDES 56
              +IL   + V KR  MYIG T  E                 GL  +I E++DN++DE+
Sbjct: 2   SEFRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEA 61

Query: 57  LE---GYADIITVTLNMDGSCTVSDNGRGIP---TDLHKEEGISAAEVIMTRLHAGGKFN 110
           +     +A++I+V +  +   TV+DNGRGIP       +   I       TR  AG  F+
Sbjct: 62  IRTNFEFANVISVDI-QNNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAWTRTKAGSNFD 120

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             + +++ G++GVG S+ N  S W             +   NG     +  +       G
Sbjct: 121 DTN-RLTQGMNGVGSSLSNFFSDWFTGVTCDGETEMTVQCTNG--AENITWSSKPSKLKG 177

Query: 171 TEVTFLPSSDIFSVQDFN---YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
           T VTF P  D F     +    D +  RL+ LS +   +      KR             
Sbjct: 178 TNVTFCPDFDHFEGYMMDNSVLDIVHDRLQSLSVIFPKITFKFNGKRI------------ 225

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                VS    + K     P  I+    ++++  A+   +G     + F N +  K+GGT
Sbjct: 226 -----VSKFKDYAKLYNDDPFVIEDKNFSLALVPAV---EGEGFKSVSFANGLFTKNGGT 277

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEK 346
           H+  +   L  +I   ++K       K  V     + G T +L ++ +P+ RF SQTKE+
Sbjct: 278 HVDYVTDDLCEEIVKRIKKE-----YKVDVTKAAVKSGLTCILIVRELPNLRFDSQTKER 332

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +            D     L +   + + I+  ++   + R  A      T+      
Sbjct: 333 LTNPTGD---IKRHIDLDFKKLAKVIAKKENIIMPIIAVVLARKEAADKAAATKAAKAAK 389

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            A +   +         ++ LFL EGDSA       R ++     PLRGK L        
Sbjct: 390 RAKVAKHVKANLIGTDAETTLFLTEGDSAINYLISVRDQDLHGGFPLRGKTLTTWEQPEA 449

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG-AHIRTLLLTFFFRQM 525
           K++ + EI  ++   G   G D   ++ ++Y  I IMTDAD DG   I+  L++FF R  
Sbjct: 450 KIVKNAEIFNIMAITGLQFGVD--ALDVMQYKNIAIMTDADTDGIGSIKPSLISFFAR-W 506

Query: 526 PSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
           P L  +G +  IK P+      +G  +++  D E  E+     ++      +      ++
Sbjct: 507 PELFEDGRIRFIKTPIIIAEPKKGDDVRWYYDLEDFEN--DRDNIKGYNIRYIKGLASLT 564

Query: 584 KNDLRNFIDD 593
           ++D    I+D
Sbjct: 565 ESDYHRVIND 574


>gi|37931161|gb|AAP69941.1| DNA gyrase subunit beta [Aeromonas popoffii]
 gi|37931163|gb|AAP69942.1| DNA gyrase subunit beta [Aeromonas popoffii]
          Length = 321

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 240/323 (74%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPHAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSIEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|164456629|dbj|BAF97807.1| gyrase B subunit [Photobacterium rosenbergii]
          Length = 276

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 144/278 (51%), Positives = 198/278 (71%), Gaps = 3/278 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  ++L I R G+I++  + +G    PL + G     TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTINRGGSIHQQVYHHGEPQAPLGIIGETE-KTGTR 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI AF
Sbjct: 60  IRFWPSAETFSNIEFQYEILAKRLRELSFLNSGVSIKLIDER-EEDKQDHFMYEGGIRAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+R+K P+       + +R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VEHLNRNKTPIHPKVFHFEFTREDGIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRGALTRTLNNFMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           V+  VES + + LS +L E+P +AK +  K++DAS  R
Sbjct: 239 VKPAVESTMGEKLSEFLLENPADAKTVCTKIIDASRAR 276


>gi|30793692|gb|AAM52908.1| DNA gyrase subunit beta [Aeromonas jandaei]
 gi|194273618|gb|ACF37507.1| GyrB [Aeromonas jandaei]
 gi|194273620|gb|ACF37508.1| GyrB [Aeromonas jandaei]
          Length = 320

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 186/323 (57%), Positives = 240/323 (74%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY+EK   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|209407298|emb|CAP72534.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 300

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 159/302 (52%), Positives = 218/302 (72%), Gaps = 3/302 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L I+REG ++E ++ +G+   PL   G    D+GTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEELILTIRREGKVWEQTYRHGVPQAPLAAVGETE-DSGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AF
Sbjct: 60  IHFKPSAETFQNIHFSWDILAKRLRELSFLNSGVGIILRDERNAKE--ELFKYEGGLSAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V+YL+ +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G 
Sbjct: 118 VAYLNTNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +      +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPG
Sbjct: 238 KTAVEQEMGKHFGDFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 297

Query: 413 KL 414
           KL
Sbjct: 298 KL 299


>gi|156536672|gb|ABU80440.1| gyrase B [Photorhabdus temperata]
          Length = 328

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 182/326 (55%), Positives = 246/326 (75%), Gaps = 4/326 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRE 198
           +R+G ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRE
Sbjct: 6   RRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFSNNTEFQHDILAKRLRE 64

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L+DKR+    E    YKGGI+AFV +L+++K P+  +       +D+I 
Sbjct: 65  LSFLNSGVSIRLLDKRT--NIEDHFHYKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSIG 122

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  
Sbjct: 123 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSAT 182

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +
Sbjct: 183 GDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTV 242

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGS
Sbjct: 243 VGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGS 302

Query: 439 AKQGRSRENQAILPLRGKILNVERAR 464
           AKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 303 AKQGRNRKNQAILPLKGKILNVEKAR 328


>gi|188090344|gb|ACD49406.1| gyrase subunit B [Xanthomonas oryzae pv. oryzicola]
          Length = 288

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E +Q   +     + NR      + +  +  +  N+   ++  R 
Sbjct: 121 ALIDLPPLDVETLHAEGNQHPALDALQAVLNRGTLGTARYQLRFDPATENAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QL ETT+NPDTR LL+V+I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLGETTVNPDTRRLLQVRIEDAVAADQ 288


>gi|164456657|dbj|BAF97821.1| gyrase B subunit [Vibrio cyclitrophicus]
          Length = 273

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 148/275 (53%), Positives = 198/275 (72%), Gaps = 3/275 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           E+ F PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI+A
Sbjct: 60  EIRFWPSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKMDHFEYEGGIQA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+
Sbjct: 119 FVEHLNTNKTPIIQKIFHFNSEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
           EV+S VES + + LS +L E+P EAKI+  K++DA
Sbjct: 239 EVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDA 273


>gi|92918982|gb|ABE96839.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 320

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 185/323 (57%), Positives = 240/323 (74%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|188090278|gb|ACD49373.1| gyrase subunit B [Xanthomonas vasicola]
 gi|188090318|gb|ACD49393.1| gyrase subunit B [Xanthomonas vasicola]
          Length = 288

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEI-----NVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     + E  Q        +     + NR      + +  +  +  N+   ++  R 
Sbjct: 121 ALIDLPPLDVEKLQAEGDHHPTLDALQAVLNRGTLGTARYQLRFDPATENAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITNFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+ +I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQGRIEDAVAADQ 288


>gi|309799460|ref|ZP_07693694.1| DNA gyrase subunit B [Streptococcus infantis SK1302]
 gi|308116921|gb|EFO54363.1| DNA gyrase subunit B [Streptococcus infantis SK1302]
          Length = 207

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/192 (48%), Positives = 124/192 (64%), Gaps = 3/192 (1%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85
            RP MYIG T  E GLHH+++E++DN+IDE+L G+A  I V +  D S TV D+GRGIP 
Sbjct: 1   MRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFASHIQVFIEPDDSITVVDDGRGIPV 59

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D+ ++ G  A E + T LHAGGKF    YKVSGGLHGVG SVVNALS+ L +R+ + G I
Sbjct: 60  DIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGKI 119

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNS 204
           +   +  G +   L V G   + TGT V F P  +IF     F++D L  R++EL+FLN 
Sbjct: 120 HYQEYRRGHVVADLEVIGDT-DKTGTTVHFTPDPEIFTETTTFDFDKLNKRIQELAFLNR 178

Query: 205 SVQISLIDKRSP 216
            +QIS+ DKR  
Sbjct: 179 GLQISITDKREG 190


>gi|156536674|gb|ABU80441.1| gyrase B [Photorhabdus temperata]
          Length = 329

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 182/326 (55%), Positives = 246/326 (75%), Gaps = 4/326 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRE 198
           +R+G ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRE
Sbjct: 7   RRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFSNNTEFQHDILAKRLRE 65

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L+DKR+    E    YKGGI+AFV +L+++K P+  +       +D+I 
Sbjct: 66  LSFLNSGVSIRLLDKRT--NIEDHFHYKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSIG 123

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  
Sbjct: 124 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSAT 183

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +
Sbjct: 184 GDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTV 243

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGS
Sbjct: 244 VGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGS 303

Query: 439 AKQGRSRENQAILPLRGKILNVERAR 464
           AKQGR+R+NQAILPL+GKILNVE+AR
Sbjct: 304 AKQGRNRKNQAILPLKGKILNVEKAR 329


>gi|164456689|dbj|BAF97837.1| gyrase B subunit [Vibrio logei]
          Length = 279

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 148/281 (52%), Positives = 198/281 (70%), Gaps = 4/281 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  ++L I R G I++  + +G+   PL V G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDTTGTK 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     ++GGI+AF
Sbjct: 60  IRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFMFEGGIKAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           V++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG HLS
Sbjct: 119 VTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLS 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           EV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+A
Sbjct: 239 EVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREA 279


>gi|30793664|gb|AAM52894.1| DNA gyrase subunit beta [Aeromonas media]
 gi|30793748|gb|AAM52936.1| DNA gyrase subunit beta [Aeromonas media]
 gi|34420924|gb|AAQ67707.1| DNA gyrase subunit beta [Aeromonas sp. 741]
 gi|34420926|gb|AAQ67708.1| DNA gyrase subunit beta [Aeromonas sp. 738]
          Length = 320

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 240/323 (74%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|110084496|gb|ABG49405.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 315

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 178/317 (56%), Positives = 235/317 (74%), Gaps = 2/317 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G + + TGTEV F PS  IFS   ++Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTLYHYEILAKRL 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D 
Sbjct: 61  RELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +
Sbjct: 119 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 179 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAEFLLENPGDAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 239 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 298

Query: 437 GSAKQGRSRENQAILPL 453
           GSAKQGR+R+NQAILPL
Sbjct: 299 GSAKQGRNRKNQAILPL 315


>gi|30793656|gb|AAM52890.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|37931119|gb|AAP69920.1| DNA gyrase subunit beta [Aeromonas sp. 874]
          Length = 320

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 185/323 (57%), Positives = 239/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRXNQAILPLKGKILNVEKA 320


>gi|66271250|gb|AAY43838.1| DNA gyrase subunit B [Vibrio sp. PIZ 9806]
          Length = 317

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 169/319 (52%), Positives = 238/319 (74%), Gaps = 3/319 (0%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +F
Sbjct: 1   VNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++  
Sbjct: 60  HYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKI 118

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K
Sbjct: 119 FHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS 
Sbjct: 179 EGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLSE 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SE
Sbjct: 239 FLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSE 298

Query: 427 LFLVEGDSAGGSAKQGRSR 445
           L++VEGDSAGGSAKQGR+R
Sbjct: 299 LYIVEGDSAGGSAKQGRNR 317


>gi|30793660|gb|AAM52892.1| DNA gyrase subunit beta [Aeromonas jandaei]
          Length = 320

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 185/323 (57%), Positives = 239/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+A V YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKALVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY+EK   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|146271673|emb|CAL25318.1| DNA gyrase subunit B [Pseudomonas jessenii]
          Length = 306

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 162/309 (52%), Positives = 221/309 (71%), Gaps = 3/309 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCSE 419
           PGKLADC E
Sbjct: 298 PGKLADCQE 306


>gi|37931115|gb|AAP69918.1| DNA gyrase subunit beta [Aeromonas sp. 140P]
 gi|37931117|gb|AAP69919.1| DNA gyrase subunit beta [Aeromonas sp. 830]
          Length = 320

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 185/323 (57%), Positives = 240/323 (74%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|30793740|gb|AAM52932.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 321

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 181/323 (56%), Positives = 239/323 (73%), Gaps = 2/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + + TGTEV F PS  IFS   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTLYHYEILAKRLRELS 60

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI AFV YL+++K P+ Q        +D I ++
Sbjct: 61  FLNSGVSIRLQDER--DGREVHFCYEGGIGAFVEYLNQNKTPIHQKVFHFSTEQDGIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           + M+WND Y E V CFTNNIPQ+DGG HL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 119 VPMQWNDAYQEGVYCFTNNIPQRDGGNHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ +E  + + L+ +L E+P +AKI+V 
Sbjct: 179 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTALEQAMGEKLAEFLLENPGDAKIVVN 238

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 239 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 298

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 QGRNRKNQAILPLKGKILNVEKA 321


>gi|307343870|emb|CBJ19540.1| gyrase B subunit [Micromonospora sp. SR2]
          Length = 368

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 243/371 (65%), Gaps = 9/371 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + GN++   + N    +PL   G A + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGNVWRQHYTNSKP-SPLEK-GEATDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFE 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FD
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFD 357

Query: 492 INKLRYHKIII 502
           + KLRYHK+++
Sbjct: 358 MEKLRYHKMLL 368


>gi|30793654|gb|AAM52889.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|30793684|gb|AAM52904.1| DNA gyrase subunit beta [Aeromonas veronii bv. sobria]
 gi|30793722|gb|AAM52923.1| DNA gyrase subunit beta [Aeromonas sp. 520]
 gi|30793724|gb|AAM52924.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|30793734|gb|AAM52929.1| DNA gyrase subunit beta [Aeromonas sp. 531c]
 gi|30793746|gb|AAM52935.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|34420930|gb|AAQ67710.1| DNA gyrase subunit beta [Aeromonas sp. 'Isolate 280']
 gi|37931157|gb|AAP69939.1| DNA gyrase subunit beta [Aeromonas sp. 480]
          Length = 320

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 240/323 (74%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|146271675|emb|CAL25319.1| DNA gyrase subunit B [Pseudomonas koreensis]
          Length = 305

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 160/308 (51%), Positives = 220/308 (71%), Gaps = 3/308 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCS 418
           PGKLADC 
Sbjct: 298 PGKLADCQ 305


>gi|321401290|gb|ADW83056.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401292|gb|ADW83057.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401304|gb|ADW83063.1| DNA gyrase subunit B [Legionella pneumophila]
          Length = 208

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 121/210 (57%), Positives = 155/210 (73%), Gaps = 3/210 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP DLHKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L +
Sbjct: 1   GRGIPVDLHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLV 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G +YE  + +G+ ++P+  TG A N TGT++ F PS++ FS  +F+YD L  RLREL
Sbjct: 61  RRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAETFSNIEFHYDILAKRLREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           S+LNS V I L D+R+ +    T  Y+GGI+AFV +L+++K P+      +   +D I I
Sbjct: 120 SYLNSGVCIHLFDERTQKK--DTFHYEGGIKAFVEHLNKNKTPVHPVVFSMTSEKDGIVI 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +LAM+WNDGY E + CFTNNIPQ+DGGTH+
Sbjct: 178 ELAMQWNDGYQETIFCFTNNIPQRDGGTHM 207


>gi|30793690|gb|AAM52907.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|92918998|gb|ABE96846.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|92919000|gb|ABE96847.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|92919002|gb|ABE96848.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|92919004|gb|ABE96849.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|194273622|gb|ACF37509.1| GyrB [Aeromonas veronii]
 gi|194273624|gb|ACF37510.1| GyrB [Aeromonas veronii]
 gi|194273626|gb|ACF37511.1| GyrB [Aeromonas veronii]
 gi|194273628|gb|ACF37512.1| GyrB [Aeromonas veronii]
 gi|194273630|gb|ACF37513.1| GyrB [Aeromonas veronii]
 gi|194273632|gb|ACF37514.1| GyrB [Aeromonas veronii]
          Length = 320

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 185/323 (57%), Positives = 239/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|4514497|dbj|BAA75447.1| DNA gyrase subunit B [Acinetobacter radioresistens]
          Length = 303

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 166/306 (54%), Positives = 213/306 (69%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L ++R G I+E  + +G+   PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTVQRVGQIHEQEYQHGVPQYPLRVVGQTE-RTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T+V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TKVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--NLEHVFDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKNHLNEIFHFTTQAENGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|30793714|gb|AAM52919.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 320

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 238/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGESS-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+           D I ++
Sbjct: 60  FLNSGVSIRLRDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEHDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|171702700|dbj|BAG16318.1| DNA gyrase subunit B [Flavobacterium sp. GMA3-49]
 gi|171702748|dbj|BAG16342.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-129]
          Length = 356

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 152/349 (43%), Positives = 218/349 (62%), Gaps = 6/349 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G IYE  +  G    P+   G   +  GT  TF P   IF+    F+++TL  R+RELSF
Sbjct: 1   GKIYEQEYERGKSLYPVKQIGET-DKRGTMQTFYPDDTIFTQTTEFSFETLSARMRELSF 59

Query: 202 LNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+  DKR  +              G++ ++ YLD +++P++   I +   +  I
Sbjct: 60  LNKGITITFTDKREVDKDGNFVSEVFHSDEGLKEYIRYLDGNREPIISHVISMDNEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S    K K  +
Sbjct: 120 PVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGLLDKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V++ +  +LEE+P +AKI
Sbjct: 180 SGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDAKI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV+KV+ A+  R AA++AR++ +RK VL    LPGKL+DCSE+DP K E++LVEGDSAGG
Sbjct: 240 IVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG
Sbjct: 300 TAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIG 348


>gi|4514485|dbj|BAA75441.1| DNA gyrase subunit B [Acinetobacter haemolyticus]
 gi|4514487|dbj|BAA75442.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 209/306 (68%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L+L I R G  ++  + +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQEHQQEYHHGDPQYPLRVIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R           +GG+ 
Sbjct: 60  TIVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVNLENVYDY--EGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + IS+++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVRYINEGKTHLNEIFHFTTDADNGISVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K  V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVVVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|307343796|emb|CBJ19503.1| gyrase B subunit [Micromonospora sp. GUI3]
          Length = 368

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 163/371 (43%), Positives = 242/371 (65%), Gaps = 9/371 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + N    +PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGSVWRQHYTNSKP-SPLEK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFE 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FD
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFD 357

Query: 492 INKLRYHKIII 502
           + KLRYHK+++
Sbjct: 358 MEKLRYHKMLL 368


>gi|282599154|ref|YP_003359071.1| gp60plus39 DNA topoisomerase subunit [Deftia phage phiW-14]
 gi|257219224|gb|ACV50239.1| gp60plus39 DNA topoisomerase subunit [Deftia phage phiW-14]
          Length = 648

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 136/619 (21%), Positives = 254/619 (41%), Gaps = 69/619 (11%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGD----------TDGESG------------LHHMIYEV 48
           D    ++L   D ++ RP  Y+GD          T  E G               +  E+
Sbjct: 24  DVSKYKMLSERDHIRIRPGRYLGDINTSLVKDSWTVNEQGQVERRDVQQNPAFTKLFDEI 83

Query: 49  LDNAIDESL---EGYADIITVTLNMD-GSCTVSDNGRGIPTD--LHKEEGISA----AEV 98
           + N+ D SL     + +II V  + + G  +V DNG GIP    +   EG        ++
Sbjct: 84  ITNSADFSLTADGKHLNIIRVDYSREHGCISVYDNG-GIPVVETIVDREGQPTKLWIPDM 142

Query: 99  IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-DN 157
           I   L +G  FN ++   S G +G G ++VN  SS   +      N + +++++G+    
Sbjct: 143 IFGFLRSGSNFNDEADSESAGQNGEGSTLVNVFSSRFDVETCDGKNKFSITYLDGMANKT 202

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              V  + G    T +T+ P   I  +    D+  DTL+ R  E++  N+ +++      
Sbjct: 203 APEVVAAQGATPFTRITYFPEWSIMGMTGQEDWIEDTLRRRCLEVAACNTHIRVYYN--- 259

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                        G    V         L    +     + ++++ L+    +G+     
Sbjct: 260 -------------GKPVNVKKFGDFAAMLDPVCVSESAPKWDVALSLS---KNGFKH--Y 301

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            + N+     GGTH++ +   +  ++ +++E        K+ +   +    F   ++ ++
Sbjct: 302 SYVNSTLTFVGGTHINHVMDKIVAEVRAHIESK-----TKQDIKPAEILNQFQLTVAARI 356

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +PR+SSQTKE L++      V+   +      + + P+  K++       ++       
Sbjct: 357 NNPRYSSQTKENLITPVSSYNVKYSPSKEFIKAIIDSPMMKKLLEWAERRKAVQDIKEAE 416

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
                 RK          K    + ++  ++ LF+ EGDSA    +  + + +  + PLR
Sbjct: 417 KEIQDARKASFH---HIPKYRPATNKNKAENILFVAEGDSALKPLQAAK-KPHHGLFPLR 472

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GK  NV       +   +E   LI  LG  +    F+ + +RY  +++ TDAD+DGAHIR
Sbjct: 473 GKPDNVFDKTIRHLAKQKEFQDLIQILGLDL--HQFNSDTIRYSALVVATDADLDGAHIR 530

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574
            LL   F+R    LI  GFL  +  P+  + +GK       E+  ED+      ++    
Sbjct: 531 GLLTVAFWRFWRPLIDEGFLRFLVTPIITVKQGKETIEFFTEQEYEDWRAANPTAKYTRK 590

Query: 575 FCDSKGVISKNDLRNFIDD 593
           +    G  +  D+  F++D
Sbjct: 591 YYKGLGSWATEDMERFMND 609


>gi|210062252|gb|ACJ06175.1| GyrB [Aeromonas media]
          Length = 322

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 178/321 (55%), Positives = 234/321 (72%), Gaps = 3/321 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYE 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+       
Sbjct: 60  ILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
              +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   S
Sbjct: 118 TTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYS 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E
Sbjct: 178 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 297

Query: 431 EGDSAGGSAKQGRSRENQAIL 451
           EGDSAGGSAKQGR+R+NQAIL
Sbjct: 298 EGDSAGGSAKQGRNRKNQAIL 318


>gi|322875026|gb|ADX20836.1| DNA gyrase subunit B [Legionella longbeachae]
          Length = 208

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 154/210 (73%), Gaps = 3/210 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+HKE+G SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L +
Sbjct: 1   GRGIPVDIHKEQGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTV 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G I+E  + NG+ D P+  TG A   TGT++ F PS+D FS  +F+YD L  RLREL
Sbjct: 61  RRHGKIHEQRYRNGVPDAPMAETGDAT-TTGTQIWFKPSADTFSNIEFHYDILAKRLREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           S+LNS V I L D+RS   R+ T  Y+GGI+AFV +L+++K  +M     +   ++NI +
Sbjct: 120 SYLNSGVCIHLFDERS--QRQDTFHYEGGIKAFVEHLNKNKNVIMPIVFSMTAEKENIVV 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +L+M+WND Y E + CFTNNIPQ+DGGTH+
Sbjct: 178 ELSMQWNDSYQETLYCFTNNIPQRDGGTHM 207


>gi|57868970|gb|AAW57478.1| gyrase B [Serratia symbiotica]
          Length = 307

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 170/310 (54%), Positives = 224/310 (72%), Gaps = 4/310 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G   + TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYGHGEPQAPLKVVGET-DQTGTMVRFW 59

Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS   F+   +F YD L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV Y
Sbjct: 60  PSYQTFTNVTEFEYDILAKRLRELSFLNSGVSIRLKDKRTD--REDHFHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A
Sbjct: 118 LNKNKTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + SY+EK   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 MTRTLNSYMEKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+ L  +L E+P +AK  V K++DA+  R+AAR+AR++TRRKG LD+  LPGKLA
Sbjct: 238 VETLMNEKLVDYLMENPTDAKXCVGKIIDAARAREAARKAREMTRRKGALDLVGLPGKLA 297

Query: 416 DCSERDPKKS 425
           DC ERDP  S
Sbjct: 298 DCQERDPALS 307


>gi|301166552|emb|CBW26128.1| putative DNA gyrase subunit B [Bacteriovorax marinus SJ]
          Length = 715

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 131/573 (22%), Positives = 248/573 (43%), Gaps = 29/573 (5%)

Query: 47  EVLDNAIDESLEGYADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           E+LDN IDE   G+   I   L+ DG S  V DNG G P +   +        + +    
Sbjct: 71  EILDNCIDEYYRGHVTEIHCELSEDGKSVMVEDNGIGFPIEKVPQ--------VYSEFRT 122

Query: 106 GGKFNQKS--YK----VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI--NGILDN 157
           G KF  +    K     + G +G+G +     S   K+R++   +  E ++   +G L  
Sbjct: 123 GSKFKDEETDEKGFLHRTLGQNGLGAAATCLTSDEFKVRVRHYNSKKEQTYTFIDGALKV 182

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
                      +G  V    S +++     + + L+ R+ +L++ N  +      ++   
Sbjct: 183 KKTKPKPFKGHSGVRVELKLSKEVYKNDVVDEELLRKRIIDLAYNNPGLTFYFNKEKY-- 240

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL----AMRWNDGYHENV 273
             +  +          +  +      +      +G +    IDL     +       E  
Sbjct: 241 HYKKGLLELAQRVDPDTAQEFGASAYIYEAKNTKGKKVKGKIDLSVALNLSKKSEEREKF 300

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           + F N+ P  DGG H   +R      I   + ++  +KK+K +++ +D   G T  + + 
Sbjct: 301 ISFVNSTPTFDGGFHHDRVRRLFVNSIKDKLARN--AKKEKLTLVDNDILTGITFTIGVT 358

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           MP+PRF SQTK KLV     + +E  + + ++  +++   + K  ++ V++ +  R+  +
Sbjct: 359 MPNPRFESQTKRKLVRD---THLEKGIEELMNKNIDKFLRKNKEYLEVVMERAKSRNRFQ 415

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
             +D +++        +   L     +  +   LF+ EGDSA G  +  R +  Q  + L
Sbjct: 416 ELKDASKKARKQKKQRVEKLLDANERKKRELCTLFICEGDSAIGGLRSARDKLYQGGIAL 475

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513
           +GK +NV +A    +L++QE   ++ ++G  IG ++ D++KLRY K++ + D+DVDG HI
Sbjct: 476 KGKPMNVAQAAISDILNNQEFSDIMASIGLIIGVEA-DVSKLRYSKVVFLADSDVDGGHI 534

Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573
            TLL  FF++  P L     + I K PL+ +   K  +Y++  + LE +     L  +  
Sbjct: 535 NTLLTNFFYQFWPELFDQEAICIAKAPLFEVITDKGTKYIETPDELETFRETTKLKIKEI 594

Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
                 G +S    ++ +           D   
Sbjct: 595 QRNKGLGEMSPEAWKHVLSRESFTIISASDVSR 627


>gi|210078009|emb|CAR94872.1| DNA gyrase B subunit [Ochrobactrum grignonense]
          Length = 341

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 217/342 (63%), Positives = 278/342 (81%), Gaps = 1/342 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           LKL+I+R G I+EM+F +G+ D PL+VTG AG+DTGTEV+FLPS D F++ +F+YDTL+ 
Sbjct: 1   LKLKIRRAGKIHEMAFTHGVADAPLIVTGDAGSDTGTEVSFLPSPDTFTMIEFDYDTLER 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLREL+FLNS V+I L D+R  + RE  + Y GG+  FV Y+D+ KK L+++PI I+  +
Sbjct: 61  RLRELAFLNSGVRIKLADRRHADIREQELHYDGGVIEFVKYIDKGKKALLETPIYIKSEK 120

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQ+T Y + S  +KK+K
Sbjct: 121 DGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYADASGMTKKEK 180

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
             + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSS+VR VV+S VN+ LS WLEEHP  
Sbjct: 181 VQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSKVRPVVKSLVNEALSTWLEEHPAG 240

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
            K IV+KV+ A+  R+AAR+ARD+T RK  L + SLPGKLADC ERDP KSE+F+VEGDS
Sbjct: 241 GKTIVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDPAKSEIFIVEGDS 299

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           AGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GT
Sbjct: 300 AGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGT 341


>gi|198042670|gb|ACH81160.1| GyrB [Alteromonas sp. UST950701-001]
          Length = 317

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 187/320 (58%), Positives = 240/320 (75%), Gaps = 4/320 (1%)

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL VTG   + TGT + F PSSD F+   ++YD L  RLRELSFLNS V I L D+R  
Sbjct: 1   APLAVTGDT-DKTGTMIRFWPSSDTFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERDG 59

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLC 275
           +       Y+GGI+AFV YL+  K P+ Q          D I++++AM+WND + ENV C
Sbjct: 60  KE--DHFMYEGGIKAFVEYLNEKKTPVHQKVFHFSSEQEDGIAVEVAMQWNDSFQENVFC 117

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL+G R A TR + +Y+EK   +KK K +  GDD REG T+V+S+K+P
Sbjct: 118 FTNNIPQRDGGTHLAGFRGAFTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVP 177

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEVR  VES +N+ L+ +L E+P E+KII  K++DA+  R++AR+A
Sbjct: 178 DPKFSSQTKDKLVSSEVRPAVESAMNEKLAEFLLENPAESKIIAGKIIDAARARESARKA 237

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R++T RKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 238 REMTLRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 297

Query: 456 KILNVERARFDKMLSSQEIG 475
           KILNVE+ARFDKMLSSQE+ 
Sbjct: 298 KILNVEKARFDKMLSSQEVA 317


>gi|30793688|gb|AAM52906.1| DNA gyrase subunit beta [Aeromonas caviae]
 gi|30793704|gb|AAM52914.1| DNA gyrase subunit beta [Aeromonas caviae]
          Length = 320

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 184/323 (56%), Positives = 240/323 (74%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|146271665|emb|CAL25314.1| DNA gyrase subunit B [Pseudomonas vancouverensis]
 gi|146271677|emb|CAL25320.1| DNA gyrase subunit B [Pseudomonas umsongensis]
          Length = 305

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 161/308 (52%), Positives = 220/308 (71%), Gaps = 3/308 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCS 418
           PGKLADC 
Sbjct: 298 PGKLADCQ 305


>gi|209407294|emb|CAP72532.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 302

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 156/304 (51%), Positives = 215/304 (70%), Gaps = 3/304 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G     +G
Sbjct: 1   DNXYKVSGGLHGVGVSVVNALSEELVLTIRREGKVWEQIYRHGVPQAPLTAVGETE-GSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ 
Sbjct: 60  TQIHFKPSAETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERNAKE--ELFKYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+
Sbjct: 118 AFVGYLNTNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKL 414
           PGKL
Sbjct: 298 PGKL 301


>gi|188090434|gb|ACD49451.1| gyrase subunit B [Xanthomonas bromi]
          Length = 288

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNC-----ESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E DQ   +     + NR      + +  +     N  + ++  R 
Sbjct: 121 ALIDLPPLDAQKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGTENVPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFDSGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+ +I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQGRIEDAVAADQ 288


>gi|308450488|ref|XP_003088314.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
 gi|308248035|gb|EFO91987.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
          Length = 875

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 150/371 (40%), Positives = 213/371 (57%), Gaps = 3/371 (0%)

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+W   Y E+V  + N I   +GGTH  G R ALT  +  Y  +    ++   ++ GDD 
Sbjct: 1   MQWTTAYTESVHTYANTINTHEGGTHEEGFRGALTTLVNRYAREKNILREKDDNLSGDDV 60

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+V+S+K+ +P+F  QTK KL ++E ++ V+  V D L  W E +P  AK I++K 
Sbjct: 61  REGLTAVISVKLGEPQFEGQTKTKLGNTEAKAFVQKVVGDQLGDWFERNPGPAKDIIRKA 120

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           + A+  R AAR+AR+  RRKG+L+   +PGKL+DC+ +DP  SE+F+VEGDSAGGSAK G
Sbjct: 121 IQAATARLAARKARETARRKGLLESGGMPGKLSDCTSKDPTISEIFIVEGDSAGGSAKTG 180

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R+   QAILPLRGKILNVE+AR D+ L++ E+  +ITA G GIG++ FD  K RYHKI++
Sbjct: 181 RNPHTQAILPLRGKILNVEKARLDRALNNTEVQAMITAFGAGIGEE-FDPEKARYHKIVL 239

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           M DADVDG HI TLLLT  FR M  LI  G++Y+ +PPLY I    +       ++  D 
Sbjct: 240 MADADVDGQHITTLLLTLLFRYMRPLIDLGYVYLAQPPLYRIKWANAEHEYVFSDAERDE 299

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
            +         L  +S     K      ++     D  +        +  +E A  +   
Sbjct: 300 RLTAGSQAGRRLVKESGVQRYKG--LGEMNHEELWDTTMNPETRTLLQVTMEDAATADEI 357

Query: 623 NCESDQEINVS 633
                 E   +
Sbjct: 358 FATLMGEDVEA 368



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 55/67 (82%), Gaps = 1/67 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEMN  +LW+TT+NP+TR+LL+V + DA+ AD++F+ LMG++VE RR FIQ+N
Sbjct: 317 VQRYKGLGEMNHEELWDTTMNPETRTLLQVTMEDAATADEIFATLMGEDVEARRSFIQQN 376

Query: 796 SLP-SAL 801
           ++    L
Sbjct: 377 AIDQVDL 383


>gi|73490227|dbj|BAE19788.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 304

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 161/307 (52%), Positives = 220/307 (71%), Gaps = 3/307 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPQAPMAIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADC 417
           PGKLADC
Sbjct: 298 PGKLADC 304


>gi|219944496|gb|ACL55022.1| DNA gyrase B subunit [Dietzia maris]
          Length = 444

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 154/443 (34%), Positives = 225/443 (50%), Gaps = 62/443 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++  F   +    LV  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVP-AELVDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F     IF   ++++D +  RL+E++FLN  + I+L D+R    +   +   
Sbjct: 60  -GTGTRVRFWADPTIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAI 118

Query: 227 GGIEAFVSYLDRHKKPLMQ-------SPIRIQGSRDNISIDL-------------AMRWN 266
              E   +                       +G++   ++++                + 
Sbjct: 119 ADSEGSGAEAAPGSDDGSDLAHAVDAEQAFAEGAQAADAVEVTPVDPVKVRERKRTFHYP 178

Query: 267 DG---YHENVLCFTNNIPQK------DGGTHLSGLRSAL--------------------- 296
           DG   Y   +     +I          G  H   +                         
Sbjct: 179 DGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEGG 238

Query: 297 ----------TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
                     T  +  Y       K+   ++ GDD REG  +VLS K+ DP+F  QTK K
Sbjct: 239 THEEGFRAALTSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKTK 298

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  V+  V++ +  W E +P EAK+I+ K + +S  R AAR+AR++ RRK   D
Sbjct: 299 LGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSATD 358

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R D
Sbjct: 359 IGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 418

Query: 467 KMLSSQEIGTLITALGTGIGQDS 489
           K+L + E+  +ITALGTGI ++ 
Sbjct: 419 KVLKNAEVQAIITALGTGIHEEF 441


>gi|259479051|dbj|BAI40073.1| DNA gyrase beta subunit [Aeromonas sp. TT1]
          Length = 319

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 185/322 (57%), Positives = 239/322 (74%), Gaps = 3/322 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYLDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVER 462
           QGR+R+NQAILPL+GKILNVE+
Sbjct: 298 QGRNRKNQAILPLKGKILNVEK 319


>gi|259479047|dbj|BAI40071.1| DNA gyrase beta subunit [Aeromonas sp. Kochi]
 gi|264685602|dbj|BAI49150.1| DNA gyrase beta subunit [Aeromonas sp. ATCC 15467]
          Length = 319

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 185/322 (57%), Positives = 239/322 (74%), Gaps = 3/322 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVER 462
           QGR+R+NQAILPL+GKILNVE+
Sbjct: 298 QGRNRKNQAILPLKGKILNVEK 319


>gi|188090328|gb|ACD49398.1| gyrase subunit B [Xanthomonas perforans]
          Length = 288

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E DQ   +     + NR      + +  +     N+   ++  R 
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSENAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+ +I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQGRIEDAVAADQ 288


>gi|285026267|dbj|BAI67862.1| DNA gyrase B [Rubritalea spongiae]
          Length = 360

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 167/360 (46%), Positives = 226/360 (62%), Gaps = 15/360 (4%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ-DFNY 189
           S W K  + REG ++++ F  G    PL V G A  + TGT+VTF P + IF    +F +
Sbjct: 1   SDWFKAEVTREGKVHQIIFERGKTTQPLEVVGEAPSDKTGTKVTFFPDAAIFVDTINFEF 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLREL+FLN  + I L D+R    ++ T +Y  GIE FV+ L  +K  + + P+ 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDERPESEKKETFYYAKGIEEFVAQLSENKTTVHEEPVV 120

Query: 250 IQGSRD------------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + G R             ++  D+  ++ND Y +N+LC+ N+IP  DGGTHL+G R ALT
Sbjct: 121 LTGKRQVEIDYDGKVVEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGFRGALT 180

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y + +   K    S+ GDD REG   V+S+KMP+PRFSSQTK+KLV++E+  VV 
Sbjct: 181 RSINQYAKANKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEIEGVVS 240

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V +GL A+ +E+P  AK I+ K +  +     A R    T RK V+    LPGKLADC
Sbjct: 241 SIVYEGLQAYFDENPNLAKQIIDKAV-NAARAREAARKARETVRKSVMSGGGLPGKLADC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERDP KSEL++VEGDSAGGSAK GR+R NQAILPLRGK++NVE+AR  K L ++EI  +
Sbjct: 300 SERDPAKSELYIVEGDSAGGSAKSGRNRINQAILPLRGKVINVEKARLHKALQNKEIQAM 359


>gi|219944534|gb|ACL55041.1| DNA gyrase B subunit [Dietzia psychralcaliphila]
          Length = 440

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 154/439 (35%), Positives = 223/439 (50%), Gaps = 58/439 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++  F   +    LV  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQDFDMAVPK-ELVDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F     IF   ++ +D +  RL+E++FLN  + I+L D+RS   +   +   
Sbjct: 60  -GTGTRVRFWADPSIFESTEYEFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDAI 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND------------GYHENVL 274
              E   S               +   R  +   +                   Y + + 
Sbjct: 119 ADSEGRGSDSAPGSDEGSDIEHAVDAERAFVEGAVETTEPAAPVKVRERKRTFHYPDGLK 178

Query: 275 CFTNNIPQKDGGTHL--------------------------------------------S 290
            +   I +     H                                              
Sbjct: 179 DYVTAINKSKTAIHQTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINTHEGGTHEE 238

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +  Y       K+   ++ GDD REG  +V+S K+ DP+F  QTK KL ++
Sbjct: 239 GFRAALTLLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTKLGNT 298

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  ++  V++ +  W E +P EA++I+ K + +S  R AAR+AR++ RRK   DI  L
Sbjct: 299 EVKGFIQRQVSEHVGHWFEANPAEARVIINKGIASSQARVAARKAREMVRRKSATDIGGL 358

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R DK+L 
Sbjct: 359 PGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLK 418

Query: 471 SQEIGTLITALGTGIGQDS 489
           + E+  +ITALGTGI ++ 
Sbjct: 419 NTEVQAIITALGTGIHEEF 437


>gi|146271671|emb|CAL25317.1| DNA gyrase subunit B [Pseudomonas mohnii]
          Length = 305

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 161/308 (52%), Positives = 220/308 (71%), Gaps = 3/308 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCS 418
           PGKLADC 
Sbjct: 298 PGKLADCQ 305


>gi|261488472|emb|CAU94911.1| DNA gyrase subunit B [Aquabacterium citratiphilum]
          Length = 320

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 148/302 (49%), Positives = 204/302 (67%), Gaps = 21/302 (6%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E+ +T LHAGGKFNQ SYKVSGGLHGVGVS VN LS WL+L ++R+G  + + F  G+  
Sbjct: 1   EIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWLRLTVRRDGKTHFIEFKQGVPQ 60

Query: 157 ------------NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLN 203
                       +P+ +TG   +  GTEV FLP  +IF   + ++YD L  RLRELSFLN
Sbjct: 61  DRVIEIRDGVETSPMRITGDT-DKRGTEVHFLPDVEIFKENNEYHYDILAKRLRELSFLN 119

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNIS 258
           + V+I LID+R+ +       Y GG++ FV ++++ K  L  +    QG +      N+ 
Sbjct: 120 NGVKIRLIDERNNKE--DNFAYAGGVKGFVEFINKGKATLNPNIFHAQGDKLSDQGTNVG 177

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WN+ Y+E+VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E +  +KK K  V 
Sbjct: 178 VEVAMQWNESYNESVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDNELAKKAKVEVA 237

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG   V+S+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ WL E+P++AKII
Sbjct: 238 GDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVXRLLTDWLLENPIDAKII 297

Query: 379 VK 380
             
Sbjct: 298 CG 299


>gi|4514451|dbj|BAA75424.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514475|dbj|BAA75436.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 208/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+R G I+E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIQRAGKIHEQEYAHGDPQYPLKVVGET-DQSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   F+ D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERV--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L         + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNDIFHFTTDADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|57868972|gb|AAW57479.1| gyrase B [Candidatus Hamiltonella defensa]
          Length = 307

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 167/310 (53%), Positives = 221/310 (71%), Gaps = 4/310 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I REG+I++ +++ G    PL V G     TG  V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELTISREGSIHQQTYVMGEPQAPLKVMGKTE-LTGXRVRFW 59

Query: 177 PS-SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS     +  +F YD L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV+Y
Sbjct: 60  PSLKTFTNQTEFQYDILAKRLRELSFLNSGVFICLEDKRNDQE--KHFHYEGGIQAFVTY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R A
Sbjct: 118 LNKNKTPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRXA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           +TR + SY+EK   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 MTRTMNSYMEKEGFSKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           VE+ +N+ L  +L E+P +AK IV K++DA+  R+AAR+AR++TRRKG LD+A LPGKLA
Sbjct: 238 VETLMNEKLVEYLLENPSDAKTIVNKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 297

Query: 416 DCSERDPKKS 425
           DC ERDP  S
Sbjct: 298 DCQERDPALS 307


>gi|146271669|emb|CAL25316.1| DNA gyrase subunit B [Pseudomonas moorei]
          Length = 305

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 161/308 (52%), Positives = 220/308 (71%), Gaps = 3/308 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADCS 418
           PGKLADC 
Sbjct: 298 PGKLADCQ 305


>gi|116069848|gb|ABI13053.2| DNA gyrase subunit B [Pseudomonas sp. 1YB2]
          Length = 303

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 161/306 (52%), Positives = 219/306 (71%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKVVGESE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS + F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFRPSDETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|259479053|dbj|BAI40074.1| DNA gyrase beta subunit [Aeromonas sp. TT2]
          Length = 319

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 184/322 (57%), Positives = 239/322 (74%), Gaps = 3/322 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVER 462
           QGR+R+NQAILPL+GKILNVE+
Sbjct: 298 QGRNRKNQAILPLKGKILNVEK 319


>gi|259479043|dbj|BAI40069.1| DNA gyrase beta subunit [Aeromonas sp. GV16]
 gi|264685584|dbj|BAI49141.1| DNA gyrase beta subunit [Aeromonas sp. A10]
 gi|264685586|dbj|BAI49142.1| DNA gyrase beta subunit [Aeromonas sp. 67P24]
 gi|264685588|dbj|BAI49143.1| DNA gyrase beta subunit [Aeromonas sp. Y62]
 gi|264685590|dbj|BAI49144.1| DNA gyrase beta subunit [Aeromonas sp. AC9804]
 gi|264685592|dbj|BAI49145.1| DNA gyrase beta subunit [Aeromonas sp. AC0202]
 gi|264685594|dbj|BAI49146.1| DNA gyrase beta subunit [Aeromonas sp. GF1]
 gi|264685598|dbj|BAI49148.1| DNA gyrase beta subunit [Aeromonas sp. ATCC 19570]
 gi|264685600|dbj|BAI49149.1| DNA gyrase beta subunit [Aeromonas sp. ATCC 14715]
          Length = 319

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 184/322 (57%), Positives = 239/322 (74%), Gaps = 3/322 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVER 462
           QGR+R+NQAILPL+GKILNVE+
Sbjct: 298 QGRNRKNQAILPLKGKILNVEK 319


>gi|307343876|emb|CBJ19543.1| gyrase B subunit [Micromonospora sp. SR15]
          Length = 367

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 162/371 (43%), Positives = 237/371 (63%), Gaps = 9/371 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I ++G ++   +      +PL   G   + TG+ V F P  D+F   DF++ T+  RL
Sbjct: 1   VEIHKDGFVWRQQYTASKP-SPLDK-GETTDRTGSAVAFWPDPDVFETVDFDFQTIYRRL 58

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN  + I L+D+R  E      RE+T  YKGGI  FV +L+  K P+ ++ +   
Sbjct: 59  QEMAFLNRGLTIHLLDERVAEEENGRQREVTFCYKGGIADFVRHLNASKTPIHKTVVEFA 118

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
           G  + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        
Sbjct: 119 GEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSLVNKYGA-EKKLL 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +
Sbjct: 178 KSDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 238 PAEAKVIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FD
Sbjct: 298 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFD 356

Query: 492 INKLRYHKIII 502
           + KLRYHK+++
Sbjct: 357 MEKLRYHKMLL 367


>gi|188090308|gb|ACD49388.1| gyrase subunit B [Xanthomonas cucurbitae]
          Length = 288

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 140/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      +  I      +D   + 
Sbjct: 61  DDAALNAYLASSAVEGAALIPAADEPPITGEALEKLLLLFAGANDAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D    +     + NR      + +  +  +  +  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPALEALQAVLNRGTLGTARYQLRFDPATEHTAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   V+   +  S   +  R  +  +         ++       IT        + 
Sbjct: 181 HMGEEFTQVVPMGAFESGELRPLREVALALNGLVREGAQIVRGNKSHPITSFGQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I +A  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEEAVAADQ 288


>gi|30793650|gb|AAM52887.1| DNA gyrase subunit beta [Aeromonas veronii bv. sobria]
 gi|30793674|gb|AAM52899.1| DNA gyrase subunit beta [Aeromonas veronii bv. veronii]
          Length = 320

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 184/323 (56%), Positives = 239/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R++QAILPL+GKILNVE+A
Sbjct: 298 QGRNRKDQAILPLKGKILNVEKA 320


>gi|323651010|ref|YP_004243653.1| ATP-hydrolyzing DNA topoisomerase subunit B [Bacillus subtilis
           subsp. natto]
 gi|323461650|dbj|BAJ77066.1| subunit B of ATP-hydrolyzing DNA topoisomerase [Bacillus subtilis
           subsp. natto]
          Length = 638

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 157/661 (23%), Positives = 262/661 (39%), Gaps = 38/661 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q      D I+ L   +  +++ +++ G  D     +H + E+L N  DE +  +
Sbjct: 1   MTTTNQ------DKIKRLDDREKSREKIAIWYGSADN---YYHGLKEILANGTDEVINNF 51

Query: 61  ADII-TVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
            + I T+ L  D  +  V+D GRGIP D  + +G+   E++   L A  K+   S + + 
Sbjct: 52  DEGIVTLELFDDLQTVRVTDTGRGIPIDG-ETDGVKNYELLFRTLFASTKYE-TSEQTTT 109

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLP 177
           G +GVG +V+N  S +  +    +G  + + F NG  L   L     + +  GT +TF  
Sbjct: 110 GTNGVGATVLNFTSLFFHIESYYDGYKHTLKFENGGELVQDLTKEKISEDRHGTVITFKL 169

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             +++ V  ++ D ++  +R  +  +  +++  I     E        +   E   S   
Sbjct: 170 DPEVYPVVTYDKDVVREIVRRFAIGSHKIKLIFIHNGEEETFHYESVEEYFEELIGSTTT 229

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
                  +S     G R  I     + ++         + N     DGG+   G+ + + 
Sbjct: 230 SPVITAPESLYEEDGERTQIK----LTFSTTTDPIQESYLNLTYLSDGGSFNDGVITGIK 285

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
                Y  ++    K   S   +D     + VL        F +QTK        R + +
Sbjct: 286 TFCNKYARENKLFPKGINSFTTEDIESSVSFVLVALSNKVEFKNQTKLSTDKKLYRKLAQ 345

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR---DAARRARDLTRRKGVLDIASLPGKL 414
                 L  +  E+    K  +  +L+          A++       + V  I +    L
Sbjct: 346 RHTTQLLEVFQIENEKGFKKFINHLLEVQKHNTQSQKAKQQLKKKLSEKVDGIGNKVANL 405

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DC +     SE+F+ EG SA GS    R    QA  PLRGKILN  +A +  +  +Q I
Sbjct: 406 VDCKKHGKD-SEIFIAEGQSALGSIVLARDAVYQAAYPLRGKILNCLKADYTTIFKNQII 464

Query: 475 GTLITALGTGIGQDS-------FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
             LI  LG GI  D        F+IN LRY KIII TD D DGA I  L++T  +R MP 
Sbjct: 465 TDLIKVLGCGIQTDKKNKDLDTFNINNLRYGKIIIATDQDSDGAQIACLIITMIYRLMPK 524

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G++YI + PLY I                 Y  ++S  ++       K  I++   
Sbjct: 525 LIEEGYVYIAQTPLYEIKLEDDSMI---------YFYSESEKDQKINTLKGKYTIARCKG 575

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
              +D     +  + +   N  K  +E A                +    ++  L    E
Sbjct: 576 LGELDAVTMAETAMNEETRNLIKVTVEDAENMIESLETWMGSSVDNRREYISENLYKYVE 635

Query: 648 K 648
           +
Sbjct: 636 E 636



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 13/98 (13%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           E+   I     +    KI               KG  ++ R KGLGE++A  + ET +N 
Sbjct: 544 EDDSMIYFYSESEKDQKINTL------------KGKYTIARCKGLGELDAVTMAETAMNE 591

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +TR+L++V + DA    +     MG  V+ RRE+I EN
Sbjct: 592 ETRNLIKVTVEDAENMIESLETWMGSSVDNRREYISEN 629


>gi|34420922|gb|AAQ67706.1| DNA gyrase subunit beta [Aeromonas veronii bv. sobria]
 gi|264685596|dbj|BAI49147.1| DNA gyrase beta subunit [Aeromonas sp. GMA0361]
          Length = 319

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 182/322 (56%), Positives = 239/322 (74%), Gaps = 3/322 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVER 462
           QGR+R+NQAILPL+GKILNVE+
Sbjct: 298 QGRNRKNQAILPLKGKILNVEK 319


>gi|219944540|gb|ACL55044.1| DNA gyrase B subunit [Dietzia kunjamensis]
          Length = 444

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 152/443 (34%), Positives = 223/443 (50%), Gaps = 62/443 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++  F   +    L+  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVP-AELIDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F     IF   ++ +D +  RL+E++FLN  + I+L D+R    +   +   
Sbjct: 60  -GTGTRVRFWADPTIFESTEYEFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAI 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-------IDL-------------AMRWN 266
              E   +               +   R  +        +++                + 
Sbjct: 119 ADSEGSGAEAAPGSDEGSDLTHAVDAERAFVEGAQETEAVEVTPAEPVKVHERKRTFHYP 178

Query: 267 DG---YHENVLCFTNNIPQK------DGGTHLSGLRSAL--------------------- 296
           DG   Y   +     +I          G  H   +                         
Sbjct: 179 DGLKDYVTAINKSKTSIHPTILYFDGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEGG 238

Query: 297 ----------TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
                     T  +  Y  +    K+   ++ GDD REG  +V+S K+ DP+F  QTK K
Sbjct: 239 THEEGFRAALTSLVNKYAREKKLVKEKDPNLTGDDIREGLAAVISAKIADPQFEGQTKTK 298

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  V+  V++ +  W E +P EAK+I+ K + +S  R AAR+AR++ RRK   D
Sbjct: 299 LGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSATD 358

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R D
Sbjct: 359 IGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 418

Query: 467 KMLSSQEIGTLITALGTGIGQDS 489
           K+L + E+  +ITALGTGI ++ 
Sbjct: 419 KVLKNAEVQAIITALGTGIHEEF 441


>gi|30793728|gb|AAM52926.1| DNA gyrase subunit beta [Aeromonas sp. 610]
          Length = 320

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 239/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G +YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGXVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|188090458|gb|ACD49463.1| gyrase subunit B [Xanthomonas sacchari]
 gi|188090460|gb|ACD49464.1| gyrase subunit B [Xanthomonas sacchari]
          Length = 285

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +   ++  I+   L   +      ++ +      +D   + 
Sbjct: 61  DDNALNAYLASSAVEGAALVPASNEPPITGAALEKLLLLFASANEAVARNAHRYDPALLS 120

Query: 615 QAVISGVFNCESDQEINVS--LASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRI 667
             +     +    +    +      L   LN  +  S +             + + V R 
Sbjct: 121 ALIDLPPLDVAQLESEGEAHPSLDALQAVLNRGSLGSARYALSFERGSEQKPAMLKVIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +    +  ++  S   +  R  +  +         ++       I+        +F
Sbjct: 181 HMGEELTSWVPMAAFESGELRALREVALALHGLVREGAQIVRGNKTQAISSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  
Sbjct: 241 EEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVA 285


>gi|219944500|gb|ACL55024.1| DNA gyrase B subunit [Dietzia maris]
          Length = 444

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 154/443 (34%), Positives = 226/443 (51%), Gaps = 62/443 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++  F   +    LV  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVP-AELVDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F     IF   ++++D +  RL+E++FLN  + I+L D+R    +   +   
Sbjct: 60  -GTGTRVRFWADPTIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAI 118

Query: 227 GGIEAFVSYLDRHKKPLMQ-------SPIRIQGSRDNISIDL-------------AMRWN 266
              E   +                       +G++   ++++                + 
Sbjct: 119 ADSEGSGAEAAPGSDEGSDLAHAVDAEQAFAEGAQAADAVEVTPVEPVKVRERKRTFHYP 178

Query: 267 DG---YHENVLCFTNNIPQK------DGGTHLSGLRSAL--------------------- 296
           DG   Y   +     +I          G  H   +                         
Sbjct: 179 DGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEGG 238

Query: 297 ----------TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
                     T  +  Y  +    K+   ++ GDD REG  +VLS K+ DP+F  QTK K
Sbjct: 239 THEEGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKTK 298

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  V+  V++ +  W E +P EAK+I+ K + +S  R AAR+AR++ RRK   D
Sbjct: 299 LGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSATD 358

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R D
Sbjct: 359 IGGLPGKLADCRSKDPSKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 418

Query: 467 KMLSSQEIGTLITALGTGIGQDS 489
           K+L + E+  +ITALGTGI ++ 
Sbjct: 419 KVLKNAEVQAIITALGTGIHEEF 441


>gi|85681949|gb|ABC73080.1| DNA gyrase subunit beta [Oceanimonas denitrificans]
          Length = 271

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 140/274 (51%), Positives = 193/274 (70%), Gaps = 4/274 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I R G ++E ++++G    PL   G     +GT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLQLTIWRNGKVHEQTYVHGEPQAPLAEVGETT-KSGTLIRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S   F+  DF+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV YL+
Sbjct: 60  SHATFTDTDFHYDILAKRLRELSFLNSGVSIRLLDERDNKEAH--FQYEGGIQAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R+K P+          R++ I+++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G R+AL
Sbjct: 118 RNKTPIHPKAFHFATEREDGIAVEVSMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRAAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNSYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           E  + + L+ +L E+P +AKI+V K++DA+  R+
Sbjct: 238 EQAMAERLNEFLLENPSDAKIVVNKIIDAARARE 271


>gi|259479045|dbj|BAI40070.1| DNA gyrase beta subunit [Aeromonas sp. GV20]
 gi|259479049|dbj|BAI40072.1| DNA gyrase beta subunit [Aeromonas sp. Rameshwaram]
 gi|259479055|dbj|BAI40075.1| DNA gyrase beta subunit [Aeromonas sp. TT5]
          Length = 319

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 184/322 (57%), Positives = 238/322 (73%), Gaps = 3/322 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVER 462
           QGR+R+NQAILPL+GKILNVE+
Sbjct: 298 QGRNRKNQAILPLKGKILNVEK 319


>gi|30793682|gb|AAM52903.1| DNA gyrase subunit beta [Aeromonas veronii bv. sobria]
          Length = 320

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 238/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L  +R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLQVER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGVIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R++QAILPL+GKILNVE+A
Sbjct: 298 QGRNRKDQAILPLKGKILNVEKA 320


>gi|219944508|gb|ACL55028.1| DNA gyrase B subunit [Dietzia maris]
          Length = 444

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 154/443 (34%), Positives = 225/443 (50%), Gaps = 62/443 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++  F   +    LV  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVP-AELVDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F     IF   ++++D +  RL+E++FLN  + I+L D+R    +   +   
Sbjct: 60  -GTGTRVRFWADPTIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAI 118

Query: 227 GGIEAFVSYLDRHKKPLMQ-------SPIRIQGSRDNISIDL-------------AMRWN 266
              E   +                       +G++   +++                 + 
Sbjct: 119 ADSEGSGAEAAPGSDEGSDLAHAVDAEQAFAEGAQAADAVEATPVEPVKVRERKRTFHYP 178

Query: 267 DG---YHENVLCFTNNIPQK------DGGTHLSGLRSAL--------------------- 296
           DG   Y   +     +I          G  H   +                         
Sbjct: 179 DGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEGG 238

Query: 297 ----------TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
                     T  +  Y  +    K+   ++ GDD REG  +VLS K+ DP+F  QTK K
Sbjct: 239 THEEGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKTK 298

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  V+  V++ +  W E +P EAK+I+ K + +S  R AAR+AR++ RRK   D
Sbjct: 299 LGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSATD 358

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R D
Sbjct: 359 IGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 418

Query: 467 KMLSSQEIGTLITALGTGIGQDS 489
           K+L + E+  +ITALGTGI ++ 
Sbjct: 419 KVLKNAEVQAIITALGTGIHEEF 441


>gi|66271242|gb|AAY43834.1| DNA gyrase subunit B [Vibrio proteolyticus]
          Length = 293

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 153/295 (51%), Positives = 215/295 (72%), Gaps = 3/295 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT++ F PS++
Sbjct: 1   HGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAE 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I LID+R  +       Y+GGI+AFV +L+ +K
Sbjct: 60  TFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKH-DHFMYEGGIQAFVDHLNTNK 118

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P++         R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 119 TPIIDKIFHFNFEREDGIAVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRT 178

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 179 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 238

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           + + LS +L E P EAK++  K++DA+   +AAR+AR++TRRKG L++A LPGKL
Sbjct: 239 MGEKLSEFLVETPNEAKMVCSKIIDAARAPEAARKAREMTRRKGALNLAGLPGKL 293


>gi|30793662|gb|AAM52893.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 319

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 181/322 (56%), Positives = 237/322 (73%), Gaps = 3/322 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGESS-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+           D I ++
Sbjct: 60  FLNSGVSIRLRDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEHDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVER 462
           QGR+R+NQAILPL+GKILNVE+
Sbjct: 298 QGRNRKNQAILPLKGKILNVEK 319


>gi|188090276|gb|ACD49372.1| gyrase subunit B [Xanthomonas axonopodis pv. cajani]
          Length = 288

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+ +I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQGRIEDAVAADQ 288


>gi|219944498|gb|ACL55023.1| DNA gyrase B subunit [Dietzia maris]
 gi|219944504|gb|ACL55026.1| DNA gyrase B subunit [Dietzia maris]
 gi|323362415|gb|ADX42120.1| DNA gyrase beta subunit [Dietzia schimae]
          Length = 444

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 154/443 (34%), Positives = 226/443 (51%), Gaps = 62/443 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++  F   +    LV  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVP-AELVDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F     IF   ++++D +  RL+E++FLN  + I+L D+R    +   +   
Sbjct: 60  -GTGTRVRFWADPTIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAI 118

Query: 227 GGIEAFVSYLDRHKKPLMQ-------SPIRIQGSRDNISIDL-------------AMRWN 266
              E   +                       +G++   ++++                + 
Sbjct: 119 ADSEGSGAEAAPGSDEGSDLAHAVDAEQAFAEGAQAADAVEVTPVEPVKVRERKRTFHYP 178

Query: 267 DG---YHENVLCFTNNIPQK------DGGTHLSGLRSAL--------------------- 296
           DG   Y   +     +I          G  H   +                         
Sbjct: 179 DGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEGG 238

Query: 297 ----------TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
                     T  +  Y  +    K+   ++ GDD REG  +VLS K+ DP+F  QTK K
Sbjct: 239 THEEGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKTK 298

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  V+  V++ +  W E +P EAK+I+ K + +S  R AAR+AR++ RRK   D
Sbjct: 299 LGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSATD 358

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R D
Sbjct: 359 IGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 418

Query: 467 KMLSSQEIGTLITALGTGIGQDS 489
           K+L + E+  +ITALGTGI ++ 
Sbjct: 419 KVLKNAEVQAIITALGTGIHEEF 441


>gi|164456641|dbj|BAF97813.1| gyrase B subunit [Listonella anguillarum]
          Length = 273

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 141/275 (51%), Positives = 200/275 (72%), Gaps = 3/275 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  E ++    Y+GGI+AF
Sbjct: 60  LRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLLDER-EEDKKDHFRYEGGIKAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+R+K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G
Sbjct: 119 VGHLNRNKTPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           V++ VES + + L+ +L E+P EAK++  K++DA+
Sbjct: 239 VKTAVESAMGEKLAEFLAENPSEAKMVCSKIIDAA 273


>gi|188090410|gb|ACD49439.1| gyrase subunit B [Xanthomonas populi]
          Length = 288

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCES-----DQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     + E      DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQVEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+ +I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQGRIEDAVAADQ 288


>gi|146431206|gb|ABQ40586.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 272

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 141/274 (51%), Positives = 198/274 (72%), Gaps = 3/274 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +
Sbjct: 60  WPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+
Sbjct: 119 LNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 179 ALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKS 238

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            VES + + LS +L E+P EAK++  K++DA+  
Sbjct: 239 AVESAMGEKLSEFLIENPAEAKMVCSKIIDAARA 272


>gi|313870859|gb|ADR82319.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870867|gb|ADR82323.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
          Length = 209

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 117/212 (55%), Positives = 147/212 (69%), Gaps = 4/212 (1%)

Query: 83  IPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
           IPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+RE
Sbjct: 1   IPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRE 60

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSF 201
           G ++E ++  G+   PL V G     TGT V F PS   F +  +F Y+ L  RLRELSF
Sbjct: 61  GKVHEQTYKMGVPQAPLKVVGETE-QTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSF 119

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           LNS V I L DKR+ +       Y GGI+AFV YL+++K P+          +D+I +++
Sbjct: 120 LNSGVSIKLKDKRNDKE--DHFHYDGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEV 177

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R
Sbjct: 178 ALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 209


>gi|45502044|emb|CAF06523.1| Gyrase [Microbulbifer cystodytense]
          Length = 301

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 155/304 (50%), Positives = 220/304 (72%), Gaps = 3/304 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  LKL I+R G I+E ++ +G+   PL + G + + +G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSRELKLTIRRGGKIHEQTYHHGVPQAPLEIVGDS-DISG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ F+  +F++D L  RLRELSFLNS V+I L D+R+ +       Y+GG+ 
Sbjct: 60  TTVHFKPSAETFNNIEFHFDILAKRLRELSFLNSGVRIVLKDERTGKE--EVYEYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+++K P+ +         D  ++++A++WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVEFLNQNKTPVNKVLHFSSQREDGTAVEVALQWNDSFQENIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E+    KKDK +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKL 414
           PGKL
Sbjct: 298 PGKL 301


>gi|219944518|gb|ACL55033.1| DNA gyrase B subunit [Dietzia natronolimnaea]
          Length = 440

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 154/439 (35%), Positives = 225/439 (51%), Gaps = 58/439 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++ +F   +    LV  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQNFNMAVP-EKLVDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F     IF   ++++D +  RL+E++FLN  + I+L D+RS   +   +   
Sbjct: 60  -GTGTRVRFWADGSIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDAI 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG------------YHENVL 274
              E   S               +   +  +   +                   Y + + 
Sbjct: 119 ADSEGRGSDSAPGSDEGSDIEHAVDAEQAFVEGAVETTEPAEPVKVRERKRTFHYPDGLK 178

Query: 275 CFTNNIPQKDGGTHL--------------------------------------------S 290
            +   I +     H                                              
Sbjct: 179 DYVTAINKSKTAIHQTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINTHEGGTHEE 238

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +  Y       K+   ++ GDD REG  +V+S K+ DP+F  QTK KL ++
Sbjct: 239 GFRAALTSLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTKLGNT 298

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  ++  V++ +  W E +P EA++IV K + +S  R AAR+AR++ RRK   DI  L
Sbjct: 299 EVKGFIQRQVSEHVGHWFEANPAEARVIVNKGIASSQARVAARKAREMVRRKSATDIGGL 358

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R DK+L 
Sbjct: 359 PGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLK 418

Query: 471 SQEIGTLITALGTGIGQDS 489
           + E+  +ITALGTGI ++ 
Sbjct: 419 NTEVQAIITALGTGIHEEF 437


>gi|188090392|gb|ACD49430.1| gyrase subunit B [Xanthomonas axonopodis pv. axonopodis]
          Length = 288

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAITRNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     +      E DQ   +     + NR      + +  +    +N+   ++  R 
Sbjct: 121 ALIDLPPLDVEKLHAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGNDNAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+ +I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQGRIEDAVAADQ 288


>gi|61506692|dbj|BAD91108.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506696|dbj|BAD91109.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506699|dbj|BAD91110.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506704|dbj|BAD91111.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506707|dbj|BAD91112.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506710|dbj|BAD91113.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506714|dbj|BAD91114.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506717|dbj|BAD91115.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506720|dbj|BAD91116.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506723|dbj|BAD91117.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506726|dbj|BAD91118.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506730|dbj|BAD91119.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506734|dbj|BAD91120.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506737|dbj|BAD91121.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506740|dbj|BAD91122.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506743|dbj|BAD91123.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506746|dbj|BAD91124.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506749|dbj|BAD91125.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506757|dbj|BAD91128.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506760|dbj|BAD91129.1| DNA gyrase subunit B [Burkholderia glumae]
          Length = 315

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 162/318 (50%), Positives = 216/318 (67%), Gaps = 15/318 (4%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNP 158
           Q SYKVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P
Sbjct: 1   QNSYKVSGGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS + 
Sbjct: 61  MEVVGETE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE 119

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 + GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTN
Sbjct: 120 --DDFAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTN 177

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+
Sbjct: 178 NIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPK 237

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++
Sbjct: 238 FSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAARKAREM 297

Query: 399 TRRKGVLDIASLPGKLAD 416
           TRRKGVLD   LPGKLAD
Sbjct: 298 TRRKGVLDGVGLPGKLAD 315


>gi|118468752|ref|YP_884870.1| DNA topoisomerase IV subunit B [Mycobacterium smegmatis str. MC2
           155]
 gi|302595978|sp|A0QPN2|Y457_MYCS2 RecName: Full=DNA gyrase subunit B-like protein MSMEG_0457
 gi|118170039|gb|ABK70935.1| DNA topoisomerase IV subunit B [Mycobacterium smegmatis str. MC2
           155]
          Length = 677

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 141/673 (20%), Positives = 247/673 (36%), Gaps = 54/673 (8%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYA-DIITV 66
           SY A  I  L  +   + RP++ +G     + L     E++DNAI+E +  G+    +T+
Sbjct: 2   SYTAADITELDDVQHTRLRPAVNLGLDVLNTALR----EIVDNAIEEVADPGHGGSTVTI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS--GGLHGVG 124
           TL+ DGS +V+D+GRG+P D     G +     +    AGGKF+      S   GL+G+G
Sbjct: 58  TLHADGSVSVADDGRGLPVDTDPTTGKNGIVKTLGTARAGGKFSAHKDATSTGAGLNGIG 117

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------DNPLV-VTGSA 165
            +    +S+   + ++R+G  +  SF  G                       L  V+   
Sbjct: 118 AAAAVFISARTDVTVRRDGKTFLQSFGRGYPGVFEGKEFDPEAPFTRNDTQKLRGVSNRK 177

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-----PEPRE 220
            +  GTEV  L    I      +   +  R    + ++  V + ++D+       P    
Sbjct: 178 PDLHGTEVRILFDPAIAPDSTLDIGEVLLRAHAAARMSPGVHLVVVDEGWPGEEVPPAVL 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRI---QGS----RDNISIDLAMRWNDGYHENV 273
                  G +  +  +       +     +   +G     R       ++         V
Sbjct: 238 EPFSGPWGTDTLLDLMCTAAGTPLPEVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPATV 297

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS--VIGDDCREGFTSVLS 331
             F N +    GG+HL+     L+  +     +       K        D        + 
Sbjct: 298 AAFCNTVRTPGGGSHLTAAIKGLSEALAERASRMRDLGLAKNEEGPEPQDFAAVTALAVD 357

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV--LDASMVR 389
            + PD  + SQ K  + S  +   +   V   ++ W         + +     L+++  R
Sbjct: 358 TRAPDVAWDSQAKTAVSSRSLNLAMAPDVARSVTIWAANPANADTVTLWSKLALESARAR 417

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADC-----SERDPKKSELFLVEGDSAGGSAKQGRS 444
            +A  A+   R             L               +ELFL EGDSA G+ K  R 
Sbjct: 418 RSAEGAKARARAASKAKGLGTNLSLPPKLLPSRESGRGSGAELFLCEGDSALGTIKAARD 477

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
              QA  PL+GK  NV     +K  +  E   +   LG G+ +D  D    RY +I+  +
Sbjct: 478 ATFQAAFPLKGKPPNVYGFPLNKARAKDEFDAIERILGCGV-RDHCDPELCRYDRILFAS 536

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DAD DG +I + L++ F      L+  G +Y+  PPL+ +  G    Y +DE   +  + 
Sbjct: 537 DADPDGGNINSSLISMFLDFYRPLVEAGMVYVTMPPLFVVKAGDERIYCQDESERDAAVA 596

Query: 565 NQSLSEE---IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
               S             G +  +D  N + D  +  + +    P+  +  +   +  G 
Sbjct: 597 QLKASSNRRVEVQRNKGLGEMDADDFWNTVLDPQR--RTVIRVRPDESEKKLHHTLFGGP 654

Query: 622 FNCESDQEINVSL 634
                    +V+ 
Sbjct: 655 PEGRRTWMADVAA 667



 Score = 64.6 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 9/133 (6%)

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITGPCS---LLDTIFSIGRK 732
           +  S I  F   Y+ +    +    +  L ++    ++I           +  + +   +
Sbjct: 545 INSSLISMFLDFYRPLVEAGMVYVTMPPLFVVKAGDERIYCQDESERDAAVAQLKASSNR 604

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
            + +QR KGLGEM+A   W T L+P  R+++RV+  ++ +   L   L G   E RR ++
Sbjct: 605 RVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRVRPDESEK--KLHHTLFGGPPEGRRTWM 662

Query: 793 QENSLPS---ALD 802
            + +      ALD
Sbjct: 663 ADVAARVDTSALD 675


>gi|313870845|gb|ADR82312.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870847|gb|ADR82313.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870849|gb|ADR82314.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870851|gb|ADR82315.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870853|gb|ADR82316.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870855|gb|ADR82317.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870857|gb|ADR82318.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870863|gb|ADR82321.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870869|gb|ADR82324.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
          Length = 209

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 117/212 (55%), Positives = 148/212 (69%), Gaps = 4/212 (1%)

Query: 83  IPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
           IPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+RE
Sbjct: 1   IPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRE 60

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSF 201
           G ++E ++  G+   PL V G     TGT V F PS   F +  +F Y+ L  RLRELSF
Sbjct: 61  GKVHEQTYKMGVPQAPLKVVGETE-QTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSF 119

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           LNS V I L DKR+ +       Y+GGI+AFV YL+++K P+          +D+I +++
Sbjct: 120 LNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEV 177

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R
Sbjct: 178 ALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 209


>gi|219944506|gb|ACL55027.1| DNA gyrase B subunit [Dietzia maris]
          Length = 444

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 155/443 (34%), Positives = 229/443 (51%), Gaps = 62/443 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++  F   +    LV  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVP-AELVDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM--- 223
             TGT V F     IF   ++ +D +  RL+E++FLN  + I+L D+R    +   +   
Sbjct: 60  -GTGTRVRFWADPTIFESTEYEFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAI 118

Query: 224 -FYKGGIEAFVSYLDRHKKPLM---QSPIRIQGSRDNISIDL-------------AMRWN 266
              +G         D             + ++G+++  ++++                + 
Sbjct: 119 ADSEGTGAEAAPGSDEGSDLAHAVDAEQVFVEGAQETDAVEVTPAEPVKVRERKRTFHYP 178

Query: 267 DG---YHENVLCFTNNIPQK------DGGTHLSGLRSAL--------------------- 296
           DG   Y   +     +I          G  H   +                         
Sbjct: 179 DGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEGG 238

Query: 297 ----------TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
                     T  +  Y  +    K+   ++ GDD REG  +VLS K+ DP+F  QTK K
Sbjct: 239 THEEGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKTK 298

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  V+  V++ +  W E +P EAK+I+ K + +S  R AAR+AR++ RRK   D
Sbjct: 299 LGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSATD 358

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R D
Sbjct: 359 IGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 418

Query: 467 KMLSSQEIGTLITALGTGIGQDS 489
           K+L + E+  +ITALGTGI ++ 
Sbjct: 419 KVLKNAEVQAIITALGTGIHEEF 441


>gi|188090322|gb|ACD49395.1| gyrase subunit B [Xanthomonas hortorum pv. pelargonii]
          Length = 288

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPASDEPPITGEALEKLLMLFTGANEAIARNAHRYDPALMT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD--ILVKRI 667
             +     +      E DQ   +     + NR      + +  +  + +++   ++  R 
Sbjct: 121 ALIDLPPLDVAKLQAEGDQHPTLDKLQAVLNRGTLGTARYQLRFDPATDSTSATLVAVRK 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  +  ++        ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVALALDGLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR L +V+I DA  AD 
Sbjct: 241 EEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLPQVRIEDAVAADQ 288


>gi|190569867|dbj|BAG48891.1| DNA gyrase subunit B [Bartonella chomelii]
          Length = 325

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 207/325 (63%), Positives = 265/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF  G+ D+PL + G    ++GTE++FLPSS+IF+   F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTRGVADSPLKIVGDCDAESGTEISFLPSSEIFTKTKFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L D+R  + + + + Y GG+  FV Y+D+ KK L+ +PI I   +D +S+++A+
Sbjct: 61  SGVHILLTDQRHADVQSVKLHYDGGLIEFVKYIDQSKKVLIDNPIYITSEKDGMSVEVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL+G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTRQINGYAESSGITKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEEHP EAKI++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKILISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|219944510|gb|ACL55029.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944512|gb|ACL55030.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944514|gb|ACL55031.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944516|gb|ACL55032.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944520|gb|ACL55034.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944522|gb|ACL55035.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944524|gb|ACL55036.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944528|gb|ACL55038.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|323362417|gb|ADX42121.1| DNA gyrase beta subunit [Dietzia cercidiphylli]
          Length = 440

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 154/439 (35%), Positives = 225/439 (51%), Gaps = 58/439 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++ +F   +    LV  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQNFNMAVP-EELVDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F     IF   ++++D +  RL+E++FLN  + I+L D+RS   +   +   
Sbjct: 60  -GTGTRVRFWADGSIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDAI 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG------------YHENVL 274
              E   S               +   +  +   +                   Y + + 
Sbjct: 119 ADSEGRGSDSAPGSDEGSDIEHAVDAEQAFVEGAVETTEPAEPVKVRERKRTFHYPDGLK 178

Query: 275 CFTNNIPQKDGGTHL--------------------------------------------S 290
            +   I +     H                                              
Sbjct: 179 DYVTAINKSKTAIHQTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINTHEGGTHEE 238

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +  Y       K+   ++ GDD REG  +V+S K+ DP+F  QTK KL ++
Sbjct: 239 GFRAALTSLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTKLGNT 298

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  ++  V++ +  W E +P EA++IV K + +S  R AAR+AR++ RRK   DI  L
Sbjct: 299 EVKGFIQRQVSEHVGHWFEANPAEARVIVNKGIASSQARVAARKAREMVRRKSATDIGGL 358

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R DK+L 
Sbjct: 359 PGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLK 418

Query: 471 SQEIGTLITALGTGIGQDS 489
           + E+  +ITALGTGI ++ 
Sbjct: 419 NTEVQAIITALGTGIHEEF 437


>gi|253742615|gb|EES99414.1| DNA topoisomerase II [Giardia intestinalis ATCC 50581]
          Length = 1492

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 120/669 (17%), Positives = 226/669 (33%), Gaps = 116/669 (17%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDG---------------------ES 39
           MS   +        IQ + G + V  RP MY+G                           
Sbjct: 1   MSQKTK--------IQRVTGSEHVLLRPDMYVGSVSSAETFLWLYNPDQGLYYTKANIVP 52

Query: 40  GLHHMIYEVLDNAIDESL------EGY-ADIITVTLNM-DGSCTVSDNGRGIPTD--LH- 88
           GL  +  E++ NA D          G+    I   +++  G+ +V ++G     +  LH 
Sbjct: 53  GLCKIFDEIIVNASDNKQRDSDRSAGHKMSYIKCDVDVVSGAISVENDG----VEGLLHF 108

Query: 89  -KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147
            ++E +    +    L     ++    +V+GG +G G  + N  S+   + ++  G ++E
Sbjct: 109 DEKEKMYLPTLAFGILMTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTVLLQENGRVFE 168

Query: 148 MSFINGI--LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ----DFNYDTLQHRLRELSF 201
            ++ + +    +P +             +F P    F +       +   +  R  +++ 
Sbjct: 169 QTWTDNMKNTQSPRIEDVKDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAYMMRRAVDVAG 228

Query: 202 LNSSVQISLIDKRSPEPREITMFYK----------------GGIEAFVSYLDRHKKPLM- 244
            N  +++ +  +                              G  A V   D   +P + 
Sbjct: 229 CNIGLKLIINGEELKIANFEQYARMVYRSINPEITQFYEASRGDAAQVGANDSDSEPDLK 288

Query: 245 ----------------------------------QSPIRIQGSRDNISIDLAMRWNDGYH 270
                                              +   ++    N   D+ + + D   
Sbjct: 289 SAATKAKPKAKRTKKAVETNSLLVPIDELSKPSDWTSDYLKVISVNKFWDIGLGYTDSGE 348

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK-RSVIGDDCREGFTSV 329
              + F N+I   DGGTH+  +   +  Q+   + KSF       + +     +      
Sbjct: 349 LVQVSFVNSINTTDGGTHVDAILDLIMSQLNDILIKSFQQDAKNAKKLTRQQLKSCLVLF 408

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVE----SFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
           +   + +P F SQTK  L + +   +            L+  L +   + + +   +  A
Sbjct: 409 IRSLVVNPSFDSQTKISLKTDKAALLRSLGSTQAELTNLATQLVKRIQDVRPLWNALRQA 468

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS- 444
           S  + A    +    +   L              R+  K  L L EGDSA   A  G S 
Sbjct: 469 SYNQAAKLLTKTDGSKTSQLLGIPKLDDAIAAGTRESSKCTLILTEGDSAKALAVDGISS 528

Query: 445 ----RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRY 497
               ++   + PLRGK++NV     DK+ ++ EI  L   LG   G D         LRY
Sbjct: 529 IEDGKKYYGVFPLRGKVINVRNESIDKVSNNAEITNLKKILGLKQGMDYSTQEARNTLRY 588

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY-IIKPPLYGITRGKSLQYVKDE 556
             ++IMTD D DG+HI+ LL+  F      L  +         P+   T+ ++++     
Sbjct: 589 GHVMIMTDQDPDGSHIKGLLINLFDTYWNGLARSNKFLDFFITPIVRCTQARNMKTFYTI 648

Query: 557 ESLEDYLIN 565
              + +   
Sbjct: 649 PEYKKWTQT 657


>gi|30793666|gb|AAM52895.1| DNA gyrase subunit beta [Aeromonas caviae]
          Length = 319

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 183/322 (56%), Positives = 239/322 (74%), Gaps = 3/322 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVER 462
           QGR+R+NQAILPL+GKILNVE+
Sbjct: 298 QGRNRKNQAILPLKGKILNVEK 319


>gi|194477393|gb|ACF74793.1| DNA gyrase subunit B [Halorubrum distributum]
          Length = 357

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 165/359 (45%), Positives = 231/359 (64%), Gaps = 5/359 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNP-LVVT--GSAGNDTGTEVTFLPSSDIFSVQ 185
           NALS  L++ +KR+G ++   F  G              +G  TGTE+ F P  +IF   
Sbjct: 1   NALSELLEVEVKRDGGVFRHRFAGGEPAEDGFERVRDMESGESTGTEIRFWPDEEIFETT 60

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           +F   TL +RLREL+FLNS V+I L+D    +  E T  Y GGI  FV+YL+  + P+ +
Sbjct: 61  EFQTSTLANRLRELAFLNSGVEIRLVD--DRDDTEETFKYDGGIREFVAYLNETRSPIHE 118

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
             I  +   D + +++AM+  +    +V  F NNI  ++GGTHL+G ++ALTR +  Y  
Sbjct: 119 EVIYFEDETDGVHVEVAMQATEELQGSVHAFANNINTREGGTHLTGFKTALTRTVNDYAN 178

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           +         ++ G+D REG T+V+S+K PDP+F  QTK KL +SEVR VVES  ++ L 
Sbjct: 179 EHGLVDDLDANLKGEDVREGLTAVVSVKHPDPQFEGQTKTKLGNSEVRGVVESATHEKLG 238

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            + EE+P  A+ +V K  +A+  R AA++A +LTRRK  L+  +LPGKLADC  RDP ++
Sbjct: 239 TFFEENPDTAEKVVHKAAEAARARKAAKKAEELTRRKSALESTALPGKLADCQTRDPTEA 298

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           ELF+VEGDSAGGSAKQGR+RENQAILPL+GKILNVE+ R D++L + EI  LITA+G G
Sbjct: 299 ELFVVEGDSAGGSAKQGRNRENQAILPLKGKILNVEKHRLDRILENDEIRALITAIGAG 357


>gi|4514483|dbj|BAA75440.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 164/306 (53%), Positives = 208/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I R G ++E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIHRAGQVHEQEYAHGDPQYPLKVVGET-DTSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   F+ D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERV--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTTDADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|116069852|gb|ABI13055.2| DNA gyrase subunit B [Pseudomonas sp. OX1]
          Length = 303

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 159/306 (51%), Positives = 219/306 (71%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|89143218|emb|CAJ57506.1| DNA gyrase subunit B [Microbacterium thalassium]
          Length = 362

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 151/363 (41%), Positives = 218/363 (60%), Gaps = 18/363 (4%)

Query: 137 LRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHR 195
           + ++R+G+++  S+  G I   PL   G   +DTGT +TF P   IF   DF+YDTL+ R
Sbjct: 1   VEVRRQGHVWRQSYQGGGIPIAPLAQ-GETSSDTGTTITFWPDEGIFDTVDFDYDTLRTR 59

Query: 196 LRELSFLNSSVQISLIDKR------------SPEPREITMFYKGGIEAFVSY--LDRHKK 241
            ++++FLN  ++I L D+R             PE R  +  Y+ G+  +V Y    RH  
Sbjct: 60  FQQMAFLNKGLRIDLRDERALEVLDAVEEAAEPEVRHDSFLYERGLVDYVGYLNKVRHAD 119

Query: 242 PLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            +    I  +       I++++AM+W   Y ENV  F N I   +GGTH  G R+ALT  
Sbjct: 120 AVNDEIIDFESEDTERKIAMEMAMQWTTSYTENVFTFANTINTHEGGTHEEGFRAALTAL 179

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  Y   +   K    ++ G+D REG T+V+S+K+ +P+F  QTK KL ++E ++ V+  
Sbjct: 180 VNRYARANNLLKDKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQKV 239

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D L  W + +P +AK I++K +DA+  R AAR+AR+  RRK V + A++P KL DC+ 
Sbjct: 240 VGDQLGDWFDRNPAQAKNIIRKAIDAASARLAARKARETARRKSVFESAAMPDKLKDCTS 299

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK LS++E+  +I 
Sbjct: 300 KDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALSNKEVQAMIQ 359

Query: 480 ALG 482
           A G
Sbjct: 360 AFG 362


>gi|219944502|gb|ACL55025.1| DNA gyrase B subunit [Dietzia maris]
          Length = 444

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 154/443 (34%), Positives = 224/443 (50%), Gaps = 62/443 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++  F   +    LV  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVP-AELVDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF-- 224
             TGT V F     IF   ++++D +  RL+E++FLN  + I+L D+R    +   +   
Sbjct: 60  -GTGTRVRFWADPTIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAI 118

Query: 225 ----------YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL--------AMRWN 266
                       G  E          +       +   + +   ++            + 
Sbjct: 119 ADSEGSGAEAAPGSDEGSDLAHAVDAEQAFAEGAQASDAVEATHVEPVKVRERKRTFHYP 178

Query: 267 DG---YHENVLCFTNNIPQK------DGGTHLSGLRSAL--------------------- 296
           DG   Y   +     +I          G  H   +                         
Sbjct: 179 DGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEGG 238

Query: 297 ----------TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
                     T  +  Y  +    K+   ++ GDD REG  +VLS K+ DP+F  QTK K
Sbjct: 239 THEEGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKTK 298

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L ++EV+  V+  V++ +  W E +P EAK+I+ K + +S  R AAR+AR++ RRK   D
Sbjct: 299 LGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSATD 358

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           I  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE++R D
Sbjct: 359 IGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 418

Query: 467 KMLSSQEIGTLITALGTGIGQDS 489
           K+L + E+  +ITALGTGI ++ 
Sbjct: 419 KVLKNAEVQAIITALGTGIHEEF 441


>gi|164456639|dbj|BAF97812.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 271

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 142/273 (52%), Positives = 199/273 (72%), Gaps = 3/273 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       Y+GGI+AFV +
Sbjct: 60  WPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+
Sbjct: 119 LNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRA 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 179 ALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKS 238

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
            VES + + LS +L E+P EAK++  K++DA+ 
Sbjct: 239 AVESAMGEKLSEFLIENPTEAKMVCSKIIDAAR 271


>gi|190569889|dbj|BAG48902.1| DNA gyrase subunit B [Bartonella schoenbuchensis]
          Length = 325

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 207/325 (63%), Positives = 265/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF  G+ D+PL + G    ++GTE++FLPSS+IF+   F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTRGVADSPLKIVGDCDTESGTEISFLPSSEIFTKTKFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L D+R  + + + + Y GG+  FV Y+D+ KK L+ +PI I   +D +S+++A+
Sbjct: 61  SGVHILLTDQRHADVQSVKLHYDGGLIEFVKYIDQSKKVLIDNPIYITNEKDGMSVEVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL+G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTRQINGYAESSGITKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEEHP EAKI++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKILISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|190569891|dbj|BAG48903.1| DNA gyrase subunit B [Bartonella tamiae]
          Length = 325

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 207/325 (63%), Positives = 267/325 (82%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+E+SF +G  D PL V G +G +TGTEV+FLPS++ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHEVSFTHGDADAPLKVVGDSGGETGTEVSFLPSAETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V+I L D+R  + R++ + Y GG+  FV Y+D+ KKPL+  PI I G +D ++++++M
Sbjct: 61  SGVRILLTDRRHADLRQVELHYDGGLVEFVKYIDQSKKPLIAEPIYIMGEKDGMTVEVSM 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQ+  Y E S  +KK+K S+ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAESSGLAKKEKVSLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ LS W EEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSTWFEEHPAEAKVLIGKVI 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAAAAREAARKARELTRRKGALDISSLPGKLADCQERDPSKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|30793700|gb|AAM52912.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
 gi|30793710|gb|AAM52917.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
          Length = 320

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 185/323 (57%), Positives = 239/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FL S V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLKSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|186898207|gb|ACC93991.1| DNA gyrase B subunit [Acinetobacter baylyi]
          Length = 301

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 170/304 (55%), Positives = 210/304 (69%), Gaps = 3/304 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALSS L+L I R G I+E  + +G    PL V G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPQYPLKVVGETS-TTGTTV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS D FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV
Sbjct: 60  RFWPSGDTFSQTIFNVDILARRLRELSFLNAGVKIVLRDERV--NFEHIYAYEGGLSEFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            Y++  K  L         S + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R
Sbjct: 118 KYINEGKNHLNDIFHFTADSDNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+
Sbjct: 178 AALTRGLNSYLENENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGK
Sbjct: 238 PAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGK 297

Query: 414 LADC 417
           LADC
Sbjct: 298 LADC 301


>gi|30793678|gb|AAM52901.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 320

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 238/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSS+ K+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSRPKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRXNQAILPLKGKILNVEKA 320


>gi|328466994|gb|EGF38095.1| DNA gyrase subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 352

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 153/346 (44%), Positives = 217/346 (62%), Gaps = 7/346 (2%)

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            ++ALTR I  Y  +S   K     + GDD REG T+V+S+K PDP+F  QTK KL +S+
Sbjct: 1   FKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSD 60

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            R+VV+   +D  + +L EH  + K+I+ K + AS  R AA+RAR++TR+K  L+I++LP
Sbjct: 61  ARTVVDRTFSDHFNKFLMEHLADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLP 120

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471
           GKLAD + +DP+ SELF+VEGDSAGGSAK GRSR  QAILP+RGKILNVE+A  +++L++
Sbjct: 121 GKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILAN 180

Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
           +EI TL TA+GTG G   FDI+K RYHK+IIMTDADVDGAHIRTLLLT  +R M  ++  
Sbjct: 181 EEIRTLFTAMGTGFG-QDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDA 239

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590
           G++YI +PPLY + +GK ++Y+  +E L+D L     S +         G +  + L   
Sbjct: 240 GYVYIAQPPLYRLRQGKMMRYIDSDEELQDILGQLPPSPKPDIQRYKGLGEMDASQLWET 299

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636
                 +D   +       K   +   I  +   +  +     +  
Sbjct: 300 -----TMDPDTRRLLRVSPKDAEQADGIFEMLMGDHVEPRRKFIEE 340



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 56/71 (78%), Gaps = 3/71 (4%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+ASQLWETT++PDTR LLRV   DA QAD +F  LMGD VEPRR+FI+EN
Sbjct: 282 IQRYKGLGEMDASQLWETTMDPDTRRLLRVSPKDAEQADGIFEMLMGDHVEPRRKFIEEN 341

Query: 796 SLPS---ALDI 803
           ++      +D+
Sbjct: 342 AVFVDPNNIDV 352


>gi|323689894|dbj|BAJ78241.1| DNA gyrase subunit B [Shewanella benthica]
          Length = 305

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 168/308 (54%), Positives = 224/308 (72%), Gaps = 5/308 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  + +G  D P+   G A   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLQLTIRRNGKLYEQFYTSGEPDAPIKEIGDAT-STG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           TE+ F PS + F +  +F++D L  R+RELSFLNS V I LID+R  + R+    Y+GGI
Sbjct: 60  TELRFWPSHETFTNNIEFHFDILVKRVRELSFLNSGVGIRLIDER--DNRDEFFQYQGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFV YL+ +K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVDYLNVNKTPVNKDVFHFIHERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR + +Y+E+   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + + L  +L EHP EA++IV K++DA+  R+AAR+AR++TRRKG LD+ 
Sbjct: 238 SSEVKSAVEQTMGEKLGDYLMEHPNEARLIVGKIIDAARAREAARKAREMTRRKGALDLG 297

Query: 409 SLPGKLAD 416
            LPGKLAD
Sbjct: 298 GLPGKLAD 305


>gi|171702698|dbj|BAG16317.1| DNA gyrase subunit B [Flavobacterium branchiophilum]
          Length = 356

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 152/349 (43%), Positives = 218/349 (62%), Gaps = 6/349 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSF 201
           G +YE  +  G    P+   G      GT VTF P   IF     ++YDTL  R+RELSF
Sbjct: 1   GKVYEQEYEKGKALYPVKQIG-TTEKRGTIVTFYPDETIFQQTIEYSYDTLSARMRELSF 59

Query: 202 LNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           LN  + I+  DKR        +      K G++ ++ YLD +++P++   I +   +  I
Sbjct: 60  LNKGITITFTDKRIVDKEGHFQSEVFHSKEGLKEYIRYLDGNREPIIAHVISMDNEKGEI 119

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++A+ +N  Y EN+  + NNI   +GGTHL G R+ LTR +  Y + S   +K K  +
Sbjct: 120 PVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRAGLTRTLKKYADASGMLEKLKFEI 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL + EV S V   V + L  +LEE+P +A+I
Sbjct: 180 AGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVVSPVSQAVAEMLETYLEENPNDARI 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I++KV+ A+  R AA++AR++ +RK VL    LPGKL+DCSE+DP + E++LVEGDSAGG
Sbjct: 240 IIQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           +AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG  IG
Sbjct: 300 TAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGITIG 348


>gi|219944526|gb|ACL55037.1| DNA gyrase B subunit [Dietzia natronolimnaea]
          Length = 440

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 154/439 (35%), Positives = 224/439 (51%), Gaps = 58/439 (13%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166
           GKF+  SY VSGGLHGVG+SVVNALS+ ++++IKR+G +++ +F   +    LV  G A 
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQNFNMAVP-EELVDAGPAE 59

Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
             TGT V F     IF   ++++D +  RL+E++FLN  + I+L D+RS   +   +   
Sbjct: 60  -GTGTRVRFWADGSIFESTEYDFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDAI 118

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG------------YHENVL 274
              E   S               +   +  +   +                   Y + + 
Sbjct: 119 ADSEGRGSDSAPGSDEGSDIEHAVDAEQAFVEGAVETTEPAEPVKVRERKRTFHYPDGLK 178

Query: 275 CFTNNIPQKDGGTHL--------------------------------------------S 290
            +   I +     H                                              
Sbjct: 179 DYVTAINKSKTAIHQTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINTHEGGTHEE 238

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +  Y       K+   ++ GDD REG  +V+S K+ DP+F  QTK KL ++
Sbjct: 239 GFRAALTSLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTKLGNT 298

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  ++  V++ +  W E +P EA++IV K + +S  R AAR+AR++ RRK   DI  L
Sbjct: 299 EVKGFIQRQVSEHVGHWFEANPAEARVIVNKGIASSQARVAARKAREMVRRKSATDIGGL 358

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE+ R DK+L 
Sbjct: 359 PGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKPRIDKVLK 418

Query: 471 SQEIGTLITALGTGIGQDS 489
           + E+  +ITALGTGI ++ 
Sbjct: 419 NTEVQAIITALGTGIHEEF 437


>gi|308197539|gb|ADO17807.1| GyrB [Vibrio caribbenthicus]
          Length = 272

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 146/274 (53%), Positives = 199/274 (72%), Gaps = 3/274 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R GNI+  ++ +G    PL V G    +TGTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGNIHSQTYHHGEPQAPLAVLGDT-QNTGTE 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  +       ++GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREDDKS-DHFMFEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P++         R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VDHLNTNKTPIIDKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
           V+S VES + + L+ +L E+P EAK++  K++DA
Sbjct: 239 VKSAVESAMGEKLAEFLVENPSEAKMVCSKIIDA 272


>gi|190888556|gb|ACE95903.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888558|gb|ACE95904.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888560|gb|ACE95905.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888562|gb|ACE95906.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888564|gb|ACE95907.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888566|gb|ACE95908.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888568|gb|ACE95909.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888570|gb|ACE95910.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888572|gb|ACE95911.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888574|gb|ACE95912.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888576|gb|ACE95913.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888578|gb|ACE95914.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888580|gb|ACE95915.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888582|gb|ACE95916.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888584|gb|ACE95917.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888586|gb|ACE95918.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888588|gb|ACE95919.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888590|gb|ACE95920.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888592|gb|ACE95921.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888594|gb|ACE95922.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888596|gb|ACE95923.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888598|gb|ACE95924.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888600|gb|ACE95925.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888602|gb|ACE95926.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888604|gb|ACE95927.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
          Length = 136

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/136 (53%), Positives = 96/136 (70%), Gaps = 1/136 (0%)

Query: 18  LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77
           LKGL+ V+KRP MYIG TD   GLHH+++E+ DNA+DE+L G A+ I V    DGS  V+
Sbjct: 1   LKGLEPVRKRPGMYIGSTD-TRGLHHLVWELFDNAVDEALNGSANKIEVVHKKDGSIIVT 59

Query: 78  DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137
           DNGRGIP   +    +S  + + T LHAGGKF+ ++YKVSGGLHGVG SVVNALS  L +
Sbjct: 60  DNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASVVNALSRKLIV 119

Query: 138 RIKREGNIYEMSFING 153
            + R+G +YE  + +G
Sbjct: 120 TVHRDGGMYESIYQDG 135


>gi|221316456|ref|ZP_03598261.1| DNA topoisomerase (ATP-hydrolyzing) [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 638

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 158/661 (23%), Positives = 262/661 (39%), Gaps = 38/661 (5%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+   Q      D I+ L   +  +++ +++ G  D     +H + E+L N  DE +  +
Sbjct: 1   MTTTNQ------DKIKRLDDREKSREKIAIWYGSADN---YYHGLKEILANGTDEVINNF 51

Query: 61  ADII-TVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118
            + I T+ L  D  +  V+D GRGIP D  + +G+   E++   L A  K+   S + + 
Sbjct: 52  DEGIVTLELFDDLQTVRVTDTGRGIPIDG-ETDGVKNYELLFRTLFASTKYE-TSEQTTT 109

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLP 177
           G +GVG +V+N  S +  +    +G  + + F NG  L   L     + +  GT +TF  
Sbjct: 110 GTNGVGATVLNFTSLFFHIESYYDGYKHALKFENGGELVQDLTKEKISEDRHGTVITFKL 169

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
             +++ V  ++ D ++  +R  +  +  +++  I     E        +   E   S   
Sbjct: 170 DPEVYPVVTYDKDVVREIVRRFAIGSHKIKLIFIHNGEEETFHYESVEEYFEELIGSTTT 229

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
                  +S     G R  I     + ++         + N     DGG+   G+ + + 
Sbjct: 230 SPVITAPESLYEEDGERTQIK----LTFSTTTDPIQESYLNLTYLSDGGSFNDGVITGIK 285

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
                Y  ++    K   S   +D     + VL        F +QTK        R + +
Sbjct: 286 TFCNKYARENKLFPKGINSFTTEDIESSVSFVLVALSNKVEFKNQTKLSTDKKLYRKLAQ 345

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR---DAARRARDLTRRKGVLDIASLPGKL 414
                 L  +  E+    K  V  +L+          A++       + V  I +    L
Sbjct: 346 RHTTQLLEVFQIENEKGFKKFVNHLLEVQKHNTQSQKAKQQLKKKLSEKVDGIGNKVANL 405

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DC +     SE+F+ EG SA GS    R    QA  PLRGKILN  +A +  +  +Q I
Sbjct: 406 VDCKKHGKD-SEIFIAEGQSALGSIVLARDAVYQAAYPLRGKILNCLKADYTTIFKNQII 464

Query: 475 GTLITALGTGIGQDS-------FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
             LI  LG GI  D        F+IN LRY KIII TD D DGA I  L++T  +R MP 
Sbjct: 465 TDLIKVLGCGIQTDKKNKDLDTFNINNLRYGKIIIATDQDSDGAQIACLIITMIYRLMPK 524

Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           LI  G++YI + PLY I                 Y  ++S  ++       K  I++   
Sbjct: 525 LIEEGYVYIAQTPLYEIKLEDDSMI---------YFYSESEKDQKINTLKGKYTIARCKG 575

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
              +D     +  + +   N  K  +E A                +    ++  L    E
Sbjct: 576 LGELDAVTMAETAMNEETRNLIKVTVEDAENMIESLETWMGSSVDNRREYISENLYKYVE 635

Query: 648 K 648
           +
Sbjct: 636 E 636



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 13/98 (13%)

Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNP 757
           E+   I     +    KI               KG  ++ R KGLGE++A  + ET +N 
Sbjct: 544 EDDSMIYFYSESEKDQKINTL------------KGKYTIARCKGLGELDAVTMAETAMNE 591

Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +TR+L++V + DA    +     MG  V+ RRE+I EN
Sbjct: 592 ETRNLIKVTVEDAENMIESLETWMGSSVDNRREYISEN 629


>gi|207107930|dbj|BAG71977.1| DNA gyrase subunit B [Gordonia soli]
          Length = 408

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 173/411 (42%), Positives = 240/411 (58%), Gaps = 35/411 (8%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G+SV +ALS   +L I   G  ++  +   +   P+   G A   TGT V F P  DIF 
Sbjct: 1   GMSVGHALSPRAELEIDYGGYRWDPVYTRAMP-GPV-NHGEATKKTGTTVRFWPDGDIFE 58

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------------------------- 216
             +F+ +T+  RL+E++FLN  + I+L D+R                             
Sbjct: 59  TTNFSAETIARRLQEMAFLNKGLTITLTDRRVAAADPVGDSDDDREGEDAAERIKSEEEK 118

Query: 217 -----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271
                +P+  T  Y  G+  ++ +L+R K+P+  S +   G  +   +++AM+WN GY E
Sbjct: 119 ATEAAKPKTRTYHYPDGLVDYIKHLNRTKQPIHTSVVGFTGKGEGHEVEIAMQWNAGYSE 178

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
           +V  F N I   +GGTH  G R+ALT  +  Y       K+    + GDD REG  +V+S
Sbjct: 179 SVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLAAVIS 238

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ DP+F  QTK KL ++EVRS V+   N+ L  W E +P EAK I+KK +D++  R A
Sbjct: 239 VKVSDPQFEGQTKTKLGNTEVRSFVQRMSNEHLGHWFESNPAEAKTIIKKAVDSAQARIA 298

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           AR+AR+L RRK   DI  LPGKLADC   DP K E++LVEGDSAGGSAK GR    QAIL
Sbjct: 299 ARKARELVRRKTATDIGGLPGKLADCRSNDPAKCEVYLVEGDSAGGSAKTGRDSMYQAIL 358

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           PLRGKI+NVE+AR D++L + E+ ++ITA GTGI  D FDI KLRYHKI++
Sbjct: 359 PLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVL 408


>gi|12060205|dbj|BAB20457.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
 gi|116069850|gb|ABI13054.2| DNA gyrase subunit B [Pseudomonas vancouverensis]
          Length = 303

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 160/306 (52%), Positives = 219/306 (71%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|37931159|gb|AAP69940.1| DNA gyrase subunit beta [Aeromonas sp. 57]
          Length = 320

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 182/323 (56%), Positives = 239/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FS QTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSFQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|313870865|gb|ADR82322.1| DNA gyrase subunit B [Yersinia sp. Y25]
          Length = 209

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 117/212 (55%), Positives = 149/212 (70%), Gaps = 4/212 (1%)

Query: 83  IPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
           IPT +H+EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+R+
Sbjct: 1   IPTGMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRD 60

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSF 201
           G ++E ++  G+   PL + G   + TGT V F PS   F +  +F Y+ L  RLRELSF
Sbjct: 61  GKVHEQTYKMGVPQAPLKMVGET-DLTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSF 119

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           LNS V I L DKR+   RE    Y+GGI AFV YL ++K P+          +D+I +++
Sbjct: 120 LNSGVSIKLKDKRND--REDHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTMKDDIGVEV 177

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R
Sbjct: 178 ALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 209


>gi|313870861|gb|ADR82320.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
          Length = 209

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 116/212 (54%), Positives = 147/212 (69%), Gaps = 4/212 (1%)

Query: 83  IPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
           IPT +H EEG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+RE
Sbjct: 1   IPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRE 60

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSF 201
           G ++E ++  G+   PL   G     TGT V F PS   F +  +F Y+ L  RLRELSF
Sbjct: 61  GKVHEQTYKMGVPQAPLKEVGETE-QTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSF 119

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           LNS V I L DKR+ +       Y+GGI+AFV YL+++K P+          +D+I +++
Sbjct: 120 LNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEV 177

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R
Sbjct: 178 ALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 209


>gi|307343800|emb|CBJ19505.1| gyrase B subunit [Micromonospora sp. GUI12]
          Length = 364

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 161/367 (43%), Positives = 233/367 (63%), Gaps = 9/367 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I ++G ++   + +     PL   G A + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKDGFVWRQQYHHSKP-TPLEK-GEATDRTGSAVSFWPDPDVFETVDFDFHTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FL   + I L+D+R       + RE+T  Y+GGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKSPIHKTVVEFG 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                +S+++AM+WN+ Y E+V  F NNI   +GGTH  G R+ALT  +  Y        
Sbjct: 120 AEETGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGA-EKKLL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ DP+F  QTK KL ++ V+  V+   N+ L  W + +
Sbjct: 179 KGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRVCNESLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAKII++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FD
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFD 357

Query: 492 INKLRYH 498
           I KLRYH
Sbjct: 358 IEKLRYH 364


>gi|208609026|dbj|BAG72139.1| DNA gyrase B [Paenibacillus apiarius]
          Length = 300

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 135/300 (45%), Positives = 197/300 (65%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS W+++ +K+   I+ M F  G  D  L V G    +TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSEWMEVEVKQNNKIHYMRFTVGTPDADLAVIGETE-ETG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+VTF P   IF+    F YD LQ R+REL+FLN  ++I+L D R  + RE +  Y+GGI
Sbjct: 60  TKVTFKPDPTIFTETTVFEYDVLQKRIRELAFLNKGLRITLKDTRPDQEREESFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
             FV YL+++++PL +  I  +G +D + +++A+++ND Y  N+  F NNI   +GGTH 
Sbjct: 120 VQFVEYLNKNREPLHEEVIYCEGEKDGLFVEVALQYNDSYVSNIYSFANNINTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G ++ALTR I  Y  K    K+   ++ GDD REG T+++S+K+ +P+F  QTK KL +
Sbjct: 180 TGFKTALTRVINDYSRKFNLLKEKDPNLSGDDVREGITAIISVKIQEPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SE RS+ ES   D  S ++EE+P  AK +V+K L AS  R+AAR+AR++TRRK  L++++
Sbjct: 240 SEARSITESVFGDRFSTFMEENPGVAKKVVEKALMASRAREAARKAREMTRRKSALEVSA 299


>gi|164456677|dbj|BAF97831.1| gyrase B subunit [Vibrio harveyi]
          Length = 271

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 143/273 (52%), Positives = 199/273 (72%), Gaps = 3/273 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           V+S VES + + LS +L E+P EAK++  K++D
Sbjct: 239 VKSAVESAMGEKLSEFLIENPAEAKMVCSKIID 271


>gi|188090334|gb|ACD49401.1| gyrase subunit B [Xanthomonas arboricola pv. corylina]
          Length = 288

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRI 667
             +     + +  Q              + NR      + +  +  + +  ++ ++  R 
Sbjct: 121 ALIDLPPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+ +I +A  AD 
Sbjct: 241 EEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQGRIEEAVAADQ 288


>gi|85681951|gb|ABC73081.1| DNA gyrase subunit beta [Oceanimonas smirnovii]
          Length = 271

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 139/274 (50%), Positives = 193/274 (70%), Gaps = 4/274 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I R+  ++E ++ +G    PL   G     TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEKLQLTIWRKNKVHEQTYHHGEPQAPLTAVGDTT-RTGTQIRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+  +F+YD L  RLRELSFLNS V I L+D+R  +   +   Y+GGI+AFV YL+
Sbjct: 60  SHETFTDTNFHYDILAKRLRELSFLNSGVSIKLLDERDGKE--VHFEYEGGIQAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           R+K P+          R++ IS++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G R+AL
Sbjct: 118 RNKTPIHPKAFHFSTEREDGISVEVSMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRAAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRTLNGYMDKEGFSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           E  + + L  +L E+P +AKI+V K++DA+  R+
Sbjct: 238 EQTMAERLQEFLLENPNDAKIVVNKIIDAARARE 271


>gi|4514499|dbj|BAA75448.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 163/306 (53%), Positives = 206/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I R G  +E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIHRAGQTHEQEYAHGDPQYPLKVVGET-DKSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFNVDILARRLRELSFLNAGVRIVLRDERV--NFEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       +   I++++A++WN+ Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTADTDSGIAVEVALQWNESYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLESENILKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|4514491|dbj|BAA75444.1| DNA gyrase subunit B [Acinetobacter junii]
          Length = 303

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 207/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+R G I+E  + +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIQRAGQIHEQEYCHGDPQYPLKVVGET-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   F+ D L  RLRELSFLN+ V+I L D+R           +GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLENVYDY--EGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTTDADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAARRAR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARRAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|328497289|dbj|BAK18808.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 283

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 7/283 (2%)

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           H+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ 
Sbjct: 1   HRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDA 60

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
           +L  YL + ++     +    +  I+   L   +      ++ I      +D   +   +
Sbjct: 61  ALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALI 120

Query: 618 ISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARG 670
                + +  Q              + NR      + +  +  + +  ++ ++  R   G
Sbjct: 121 DLPPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMG 180

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
            +   VL   +  S   +  R  S  + +       ++       IT        +    
Sbjct: 181 EEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEA 240

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  A
Sbjct: 241 KRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAA 283


>gi|169248046|gb|ACA51806.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 334

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 197/335 (58%), Positives = 256/335 (76%), Gaps = 4/335 (1%)

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
           + +G+   PL V G   + TGT++ F PS   F+  +F YD L  RLRELSFLNS V I 
Sbjct: 2   YCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIR 60

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWND 267
           L D R  E +     ++GGI+AFV++L+R+K P+ Q        R    I +++AM+WND
Sbjct: 61  LQDMR-EEDKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQWND 119

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
            Y EN+ C+TNNIPQ+DGG HLSG RSALTR + S+++K   SKK K S  GDD REG T
Sbjct: 120 SYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLT 179

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+ 
Sbjct: 180 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAAR 239

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR+AR++TRRKG LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+N
Sbjct: 240 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKN 299

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 300 QAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|190569893|dbj|BAG48904.1| DNA gyrase subunit B [Bartonella taylorii]
          Length = 325

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 207/325 (63%), Positives = 267/325 (82%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF +G+ D+PL + G    ++GTE+ FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTHGVADSPLKIVGDCDAESGTEIRFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S + I L+D+R  + + + + Y GG+  FV Y+D+ KKPL+ +PI I   +D +S+D+A+
Sbjct: 61  SGIHILLVDERHADIQSVELHYDGGLIEFVKYIDQTKKPLLDTPIYITSEKDGMSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEKINLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEEHP EAK+I+ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKLIISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|190569865|dbj|BAG48890.1| DNA gyrase subunit B [Bartonella capreoli]
          Length = 325

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 207/325 (63%), Positives = 264/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF  G+ D PL + G    ++GTE++FLPSS+IF+   F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTRGVADCPLKIVGDCDAESGTEISFLPSSEIFTKTKFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L D+R  + + + + Y GG+  FV Y+D+ KK L+ +PI I   +D +S+++A+
Sbjct: 61  SGVHILLTDQRHADVQSVKLHYDGGLIEFVKYIDQSKKVLIDNPIYITSEKDGMSVEVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL+G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTRQINGYAESSGITKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEEHP EAKI++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKILISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|4514489|dbj|BAA75443.1| DNA gyrase subunit B [Acinetobacter junii]
          Length = 303

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 207/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I+R G I+E  + +G    PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIQRAGQIHEQEYCHGDPQYPLKVVGET-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   F+ D L  RLRELSFLN+ V+I L D+R           +GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERINLENVYDY--EGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTTDADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAARRAR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARRAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|296041311|gb|ADG85649.1| DNA gyrase subunit B [Acinetobacter sp. 2P07PC]
 gi|296041313|gb|ADG85650.1| DNA gyrase subunit B [Acinetobacter sp. 2P07PB]
          Length = 348

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 194/351 (55%), Positives = 249/351 (70%), Gaps = 3/351 (0%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G I++    +G  D  L + G     TGT V F PS++ FS   FN D L  RLRELSFL
Sbjct: 1   GQIHQQENTHGDPDYLLKIVGDVE-TTGTMVRFWPSTETFSQTIFNVDILARRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           N+ V+I + D+R     E    Y+GG+  FV Y+ + K  L +       + + I +++A
Sbjct: 60  NAGVRIVIRDERVA--LEHVFDYEGGLSEFVKYITQGKTHLSEIFHFTSQAENGIGVEVA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           ++W D Y ENV CF NNIPQKDGGTHL G R+ALTR + SY+E     KK+K +V GDD 
Sbjct: 118 LQWTDTYQENVRCFANNIPQKDGGTHLVGFRAALTRGLNSYMENENFLKKEKVAVTGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N   S +L E+P  AK I  K+
Sbjct: 178 REGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           +DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQ 
Sbjct: 238 IDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQA 297

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           R+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITALG GIG++ ++ +
Sbjct: 298 RNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITALGCGIGREDYNPD 348


>gi|4514461|dbj|BAA75429.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 164/306 (53%), Positives = 208/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I R G ++E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIHRAGQVHEQEYAHGDPQYPLKVVGET-DTSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   F+ D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERV--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTMDADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR + SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|322875030|gb|ADX20838.1| DNA gyrase subunit B [Legionella waltersii]
          Length = 208

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 120/210 (57%), Positives = 152/210 (72%), Gaps = 3/210 (1%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+HKEEG SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I
Sbjct: 1   GRGIPVDIHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLI 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +R G ++E  + +G+ D P+  TG   N TGT+V F PS+  F+  +F+YD L  RLREL
Sbjct: 61  RRHGKVHEQHYRHGVPDAPIAETG-TANSTGTQVWFKPSASTFTNIEFHYDILAKRLREL 119

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259
           S+LNS V I L D+RS   R+ T  Y+GGI+AFV +L+++K  +  +   +   +D I I
Sbjct: 120 SYLNSGVCIHLFDERS--QRKDTFHYEGGIKAFVEHLNKNKTAVHPNVFAMTAEKDGIVI 177

Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +LA++WND Y E + CFTNNIPQKDGGTH+
Sbjct: 178 ELALQWNDTYQETIFCFTNNIPQKDGGTHM 207


>gi|30793644|gb|AAM52884.1| DNA gyrase subunit beta [Aeromonas schubertii]
          Length = 320

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 188/323 (58%), Positives = 244/323 (75%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R+G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I + D+R  + RE+   Y+GGI+AFV YL++ K P+ Q  +     +D I ++
Sbjct: 60  FLNSGVSIRVSDER--DGREVHFCYEGGIKAFVEYLNQSKTPIHQKVLDFSAEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WNDGY E V CFTNNIPQ+DGGTHL+G R+ALTR + SY++K   SKK K S  GD
Sbjct: 118 VAMQWNDGYQEGVYCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEDYSKKAKTSASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + D L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGDKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|116069844|gb|ABI13051.2| DNA gyrase subunit B [Pseudomonas sp. JR1]
 gi|116069846|gb|ABI13052.2| DNA gyrase subunit B [Pseudomonas sp. IA1YICDB]
          Length = 303

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 161/306 (52%), Positives = 218/306 (71%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS   F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSDLTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|323689896|dbj|BAJ78242.1| DNA gyrase subunit B [Shewanella benthica]
          Length = 305

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 168/308 (54%), Positives = 223/308 (72%), Gaps = 5/308 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+R G +YE  +  G  D P+   G A   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLQLTIRRNGKLYEQFYTMGEPDAPIKEIGDAT-STG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           TE+ F PS + F +  +F++D L  R+RELSFLNS V I LID+R  + R+    Y+GGI
Sbjct: 60  TELRFWPSHETFTNNIEFHFDILVKRVRELSFLNSGVGIRLIDER--DNRDEFFQYQGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            AFV YL+ +K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 SAFVDYLNVNKTPINKDVFHFIHERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R ALTR + +Y+E+   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 178 LAGFRGALTRNLNAYMEREGFNKKGKTSATGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           SSEV+S VE  + + L  +L EHP EA++IV K++DA+  R+AAR+AR++TRRKG LD+ 
Sbjct: 238 SSEVKSAVEQTMGEKLGDYLMEHPTEARLIVGKIIDAARAREAARKAREMTRRKGALDLG 297

Query: 409 SLPGKLAD 416
            LPGKLAD
Sbjct: 298 GLPGKLAD 305


>gi|12060202|dbj|BAB20456.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
          Length = 303

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 160/306 (52%), Positives = 219/306 (71%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|307343852|emb|CBJ19531.1| gyrase B subunit [Micromonospora sp. SG16]
          Length = 364

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 163/367 (44%), Positives = 232/367 (63%), Gaps = 9/367 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G ++   + N     PL   G   N TG+ V F P   +F   DF++ T+  RL
Sbjct: 2   VEIHKSGFVWRQQYTNSKP-TPLEK-GETTNRTGSAVAFWPDPAVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN  + I L+D+R       +PRE+T  YKGGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLNRGLTIHLLDERVPEGEEGKPREVTFLYKGGIADFVRHLNASKNPIHKTVVEFG 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        
Sbjct: 120 AEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGA-EKKLL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAKII++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FD
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFD 357

Query: 492 INKLRYH 498
           I KLRYH
Sbjct: 358 IEKLRYH 364


>gi|110225012|dbj|BAE97495.1| DNA gyrase subunit B [Streptococcus thoraltensis]
          Length = 300

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 120/300 (40%), Positives = 181/300 (60%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS  L +++ + G IY   +  G++ + L + G      G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSKQLDVKVHKNGQIYYQEYRRGVVVDDLAIIGETDLQ-G 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P   IF+    F+Y  L  R++EL+FLN  ++IS+ DKR          Y+GGI
Sbjct: 60  TTVHFTPDPKIFTETIEFDYAKLAKRVQELAFLNKGLRISITDKREGMETSKEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  +  +PI   G  D I++++AM++   YHE ++ F NNI   +GGTH 
Sbjct: 120 ASYVEYINENKDTIFDTPIFTDGEMDGITVEVAMQYTTTYHETIMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y   +   K+   ++ GDD REG T+V+S+  P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARHNNILKEKDDNLTGDDVREGLTAVISVNHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  + +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFNRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|156536680|gb|ABU80444.1| gyrase B [Photorhabdus sp. H3240]
          Length = 333

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 178/324 (54%), Positives = 241/324 (74%), Gaps = 4/324 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRE 198
           +R+G ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRE
Sbjct: 10  RRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRNNTEFQHDILAKRLRE 68

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L+DKR+    E    Y+GGI+AFV +L+++K P+  +       +D I 
Sbjct: 69  LSFLNSGVSIRLLDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGIG 126

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           ++ A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  
Sbjct: 127 VEAALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSAT 186

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +
Sbjct: 187 GDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTV 246

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGS
Sbjct: 247 VSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGS 306

Query: 439 AKQGRSRENQAILPLRGKILNVER 462
           AKQGR+R+NQAILPL+GKILNV +
Sbjct: 307 AKQGRNRKNQAILPLKGKILNVRK 330


>gi|307343868|emb|CBJ19539.1| gyrase B subunit [Micromonospora sp. SR1]
          Length = 364

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 162/367 (44%), Positives = 238/367 (64%), Gaps = 9/367 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + N    +PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGSVWRQHYTNSKP-SPLEK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFE 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FD
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFD 357

Query: 492 INKLRYH 498
           + KLRYH
Sbjct: 358 MEKLRYH 364


>gi|116069826|gb|ABI13042.2| DNA gyrase subunit B [Burkholderia sp. WBF1]
 gi|116069830|gb|ABI13044.2| DNA gyrase subunit B [Burkholderia sp. WBF3]
 gi|116069832|gb|ABI13045.2| DNA gyrase subunit B [Burkholderia sp. WBF4]
          Length = 314

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 159/317 (50%), Positives = 216/317 (68%), Gaps = 15/317 (4%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPL 159
            SYKVSGGLHGVGVS VNALS+WL+L I+R+G  + M F  G+              +P+
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRVIEEIDGVAVSPI 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            + G    + GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +  
Sbjct: 61  QLIGETE-NRGTEVHFLADETIFGNVEYHYDILAKRIRELSFLNNGVRIKLTDQRTGKE- 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                + GG++ FV Y++++K  L  +   I G +D + +++AM+WND Y+ENVLCFTNN
Sbjct: 119 -EDFAFVGGVKGFVEYINKNKAVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVLCFTNN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+F
Sbjct: 178 IPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKF 237

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           S+QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++T
Sbjct: 238 SAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMT 297

Query: 400 RRKGVLDIASLPGKLAD 416
           RRKGVLD   LPGKLAD
Sbjct: 298 RRKGVLDGVGLPGKLAD 314


>gi|62084084|dbj|BAD91449.1| DNA gyrase subunit B [Streptococcus iniae]
 gi|110224986|dbj|BAE97482.1| DNA gyrase subunit B [Streptococcus iniae]
          Length = 300

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 131/300 (43%), Positives = 193/300 (64%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + GNIY   F  G++   L + GS  + +G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGNIYYQEFKRGVVGEDLAIIGST-DLSG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETVVFDFDKLAKRIQELAFLNRGLKISIADKRKDIEQEKNFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V YL+  K  +++SPI   G  D I++++AM++   YHENV+ F NNI   +GGTH 
Sbjct: 120 ASYVEYLNEKKDVIIESPIYTDGEMDGIAVEVAMQYTTSYHENVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D    +L E+P  A+ IV K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDAFQRFLLENPQVARRIVDKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|110224956|dbj|BAE97467.1| DNA gyrase subunit B [Streptococcus acidominimus]
          Length = 300

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 189/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + + G +Y   +  G +   L V G   + +G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYHRGEVVADLKVVGET-DRSG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++  L  R++EL+FLN  + +S+ DKR    +     Y+GGI
Sbjct: 60  TTVHFTPDPEIFNETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGLEQTKEYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V YL+ +K  + ++PI  +G  D+I++++AM++   YHENV+ F NNI   +GGTH 
Sbjct: 120 ASYVEYLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHENVVSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +KS   K+++ ++ G+D REG T+V+S+K P P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKSKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  A+ IV K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSEFLLENPQLARRIVDKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|116069842|gb|ABI13050.2| DNA gyrase subunit B [Pseudomonas sp. Cam-1]
          Length = 303

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 160/306 (52%), Positives = 217/306 (70%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS   F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSDLTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|110084488|gb|ABG49401.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
          Length = 314

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 180/317 (56%), Positives = 233/317 (73%), Gaps = 3/317 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQAILPL 453
           GSAKQGR+R+NQAILPL
Sbjct: 298 GSAKQGRNRKNQAILPL 314


>gi|164456651|dbj|BAF97818.1| gyrase B subunit [Vibrio cincinnatiensis]
          Length = 270

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 140/272 (51%), Positives = 194/272 (71%), Gaps = 3/272 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  + L I R G  +  ++ +G+   PL V G   + TGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVLLTIHRGGKTHTQTYRHGVPQAPLAVVGET-DRTGTTLRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ F+  +F+Y+ L  RLRELSFLNS V I L D+R  + +     Y+GGI+AFV++
Sbjct: 60  WPSAETFTNIEFHYEILAKRLRELSFLNSGVSIRLQDEREADKQ-DHFMYEGGIQAFVTH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+R+K P+          R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+
Sbjct: 119 LNRNKTPIHDKVFHFNHEREDGICVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+EK   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 179 ALTRTLNTYMEKEGYSKKAKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKA 238

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            VES + + L+ +L EHP EAK +  K++DA+
Sbjct: 239 AVESAMGEKLNDFLAEHPSEAKTVCSKIIDAA 270


>gi|164456697|dbj|BAF97841.1| gyrase B subunit [Vibrio mytili]
          Length = 273

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 143/275 (52%), Positives = 201/275 (73%), Gaps = 3/275 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  ++L I R G+I+  ++ +G    PL V G   + TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTTIRFWP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F+  +F+YD L  RLRELSFLNS V I LID+R  E ++    Y+GGI+AFV +L+
Sbjct: 60  SSETFTNTEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKQDHFMYEGGIKAFVDHLN 118

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+AL
Sbjct: 119 TNKTPIIEKIFHFNFEREDGIAVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 179 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 238

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           ES + + LS +L E+P EAK++  K++DA+  R+A
Sbjct: 239 ESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREA 273


>gi|92918994|gb|ABE96844.1| DNA gyrase subunit B [Aeromonas simiae]
 gi|92918996|gb|ABE96845.1| DNA gyrase subunit B [Aeromonas simiae]
          Length = 321

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 187/324 (57%), Positives = 242/324 (74%), Gaps = 4/324 (1%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R+G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+TL  RLRELS
Sbjct: 1   RQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYETLAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + REI   Y+GGI+AFV YL++ K P+          +D I ++
Sbjct: 60  FLNSGVSIVLSDER--DGREINFCYEGGIKAFVEYLNQSKTPIHPKVFHFSTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IG 319
           +AM+WNDGY E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K S   G
Sbjct: 118 VAMQWNDGYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKMSAASG 177

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + ++ +L E+P +AKI+V
Sbjct: 178 DDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKMAEFLLENPSDAKIVV 237

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSA
Sbjct: 238 NKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 297

Query: 440 KQGRSRENQAILPLRGKILNVERA 463
           KQGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 KQGRNRKNQAILPLKGKILNVEKA 321


>gi|297195944|ref|ZP_06913342.1| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718839|gb|EDY62747.1| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486]
          Length = 391

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 201/389 (51%), Gaps = 17/389 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           MSD      YDA  I++L+GL+ V+KRP M++G T GE GLH M++EV+  A++E++ G 
Sbjct: 1   MSD--AAHMYDATHIEVLEGLEVVRKRPGMWVGST-GERGLHQMVFEVVGRAVNENVAGR 57

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH----AGGKFNQKSYKV 116
           A  + V L  DG   V+D+G G+P +   E      E ++TR+H    AGG   +++  V
Sbjct: 58  AGSVAVALMPDGEVRVTDDGPGVPAEAVGEAVGPCLEDMLTRIHAQQDAGG---RRAIAV 114

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           S   +G+G+ V NAL+S L   ++R+G  +   + +G+   P    G A   +G  + F 
Sbjct: 115 SPLGNGLGLGVPNALASSLTAEVRRDGVRWVQVYASGVAVGPPTAAGPA-VGSGITLAFR 173

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-PEPREITMFYKGGIEAFVSY 235
           P + IF   + ++D L  R REL+FLN  + ISL D+RS  E R       GG   FV  
Sbjct: 174 PDAGIFETVECSFDVLAERFRELAFLNRGLDISLSDERSAGECRSERFHSPGGTRDFVLL 233

Query: 236 LDRHKKP---LMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           L   +     +    I  +    R   ++++A++W D   E V  + N+ P  +GGTH  
Sbjct: 234 LGEGRGTGALVQTDVIGFEREDPRMAGAVEVALQWRDSDEERVRTYANSRPTPEGGTHAE 293

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R  +   + +Y  +          +  D   +G T+V+S+K+  P F   T  +L ++
Sbjct: 294 GFRDGVAAAVNAYARQRRLLTSADADLGADRIGKGLTAVVSVKLDQPGFRGATCAELDNT 353

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           E R  VE  V + L  WLE HP +A  ++
Sbjct: 354 EARFGVEEAVREHLGIWLERHPEQAAAVI 382


>gi|116069840|gb|ABI13049.2| DNA gyrase subunit B [Pseudomonas sp. 1XB1]
          Length = 302

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 157/304 (51%), Positives = 217/304 (71%), Gaps = 3/304 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKELVLTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKL 414
           PGKL
Sbjct: 298 PGKL 301


>gi|188090378|gb|ACD49423.1| gyrase subunit B [Xanthomonas axonopodis pv. citri]
          Length = 288

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 97/288 (33%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKRIA 668
             +     +      E DQ   +     + NR      + +  +  GS N    LV    
Sbjct: 121 ALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSDNAPATLVAIRR 180

Query: 669 R-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR L++ +I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLVQGRIEDAVAADQ 288


>gi|110224970|dbj|BAE97474.1| DNA gyrase subunit B [Streptococcus ferus]
          Length = 301

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 127/301 (42%), Positives = 194/301 (64%), Gaps = 3/301 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G +Y   +  G + + L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGQVYFQEYRRGQVVDDLKVIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGG 228
           T V F P  +IF+   +F++  L  R++EL+FLN  ++IS+ DKR   E  +    Y+GG
Sbjct: 60  TTVHFTPDPEIFTETSEFDFAKLAKRVQELAFLNKGLRISITDKRDGNEANDKEYHYEGG 119

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           I ++V +L+  K+ +   PI   G  + I++++AM++  G+HENV+ F NNI   +GGTH
Sbjct: 120 IVSYVEFLNDTKEVIFNQPIYTDGEMEGIAVEVAMQYTTGFHENVMSFANNIHTHEGGTH 179

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
             G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL 
Sbjct: 180 EQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 239

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +SEV  +     ++ LS +L E+P  AK IV+K + AS  R AA+RAR++TR+K  L+I+
Sbjct: 240 NSEVVKITNRLFSNALSRFLLENPQTAKKIVEKGILASKARIAAKRAREVTRKKSGLEIS 299

Query: 409 S 409
           +
Sbjct: 300 N 300


>gi|54125545|gb|AAV30539.1| gyrase B [Serratia sp. MF 426]
          Length = 298

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 162/301 (53%), Positives = 219/301 (72%), Gaps = 4/301 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G     TGT V F PS 
Sbjct: 1   LHGVGVSVVNALSEKLELVIRREGKVHEQTYKHGEPQGPLKVVGETE-QTGTTVRFWPSY 59

Query: 180 DIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             F +  +F YD L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL++
Sbjct: 60  QTFTNNTEFEYDILAKRLRELSFLNSGVSIRLKDKRNDKE--DHFHYEGGIKAFVEYLNK 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR
Sbjct: 118 NKTPIHPTVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VES
Sbjct: 178 TLNNYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVES 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC 
Sbjct: 238 LMNEKLVDYLMENPADAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQ 297

Query: 419 E 419
           E
Sbjct: 298 E 298


>gi|116069834|gb|ABI13046.2| DNA gyrase subunit B [Burkholderia sp. WBF6]
          Length = 314

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 159/317 (50%), Positives = 216/317 (68%), Gaps = 15/317 (4%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPL 159
            SYKVSGGLHGVGVS VNALS+WL+L I+R+G  + M F  G+              +P+
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRVIEEIDGVAVSPI 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            + G    + GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +  
Sbjct: 61  QLIGDTE-NRGTEVHFLADETIFGNVEYHYDILAKRIRELSFLNNGVRIKLTDQRTGKE- 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                + GG++ FV Y++++K  L  +   I G +D + +++AM+WND Y+ENVLCFTNN
Sbjct: 119 -EDFAFVGGVKGFVEYINKNKAVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVLCFTNN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+F
Sbjct: 178 IPQRDGGTHLTGLRAAMTRVLNKYITDHEVAKKAKVETAGDDMREGLSCVLSVKVPEPKF 237

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           S+QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++T
Sbjct: 238 SAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICGKIVDAARARDAARKAREMT 297

Query: 400 RRKGVLDIASLPGKLAD 416
           RRKGVLD   LPGKLAD
Sbjct: 298 RRKGVLDGVGLPGKLAD 314


>gi|116069828|gb|ABI13043.2| DNA gyrase subunit B [Burkholderia sp. WBF2]
          Length = 314

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 158/317 (49%), Positives = 215/317 (67%), Gaps = 15/317 (4%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPL 159
            SYKVSGGLHGVGVS VNALS+WL+L I+R+G  + M F  G+              +P+
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRVIEEIDGVAVSPI 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            + G    + GTEV FL    IF   +++YD L  R+RELSFLN  V+I L D+R+ +  
Sbjct: 61  QLIGETE-NRGTEVHFLADETIFGNVEYHYDILAKRIRELSFLNDGVRIKLTDQRTGKE- 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                + GG++ FV Y++++K  L  +   + G +D + +++AM+WND Y+ENVLCFTNN
Sbjct: 119 -EDFAFVGGVKGFVEYINKNKAVLHPNIFHVSGEKDGVGVEVAMQWNDSYNENVLCFTNN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+F
Sbjct: 178 IPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKF 237

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           S+QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++T
Sbjct: 238 SAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMT 297

Query: 400 RRKGVLDIASLPGKLAD 416
           RRKGVLD   LPGKLAD
Sbjct: 298 RRKGVLDGVGLPGKLAD 314


>gi|213494445|gb|ACJ48961.1| DNA gyrase subunit B [Pseudomonas sp. BCRC 17752]
          Length = 334

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 187/337 (55%), Positives = 255/337 (75%), Gaps = 4/337 (1%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           E ++++G+   P+ V G +   TGT + F PS++ F    F++D L  R+RELSFLNS V
Sbjct: 1   EQTYVHGVPQAPMAVVGESE-TTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRW 265
            I L D+R+ +       Y+GG+ AFV YL+ +K P+          RD+ + +++A++W
Sbjct: 60  GILLKDERTGKE--EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQW 117

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + +Y+E+   +KK+K +  GDD REG
Sbjct: 118 NDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNNYIEQEGLAKKNKVATTGDDAREG 177

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   + +L E+P EAK +V K++DA
Sbjct: 178 LTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDA 237

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R
Sbjct: 238 ARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNR 297

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 RTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|169248044|gb|ACA51805.1| DNA gyrase subunit B [Aliivibrio salmonicida]
          Length = 331

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 191/333 (57%), Positives = 252/333 (75%), Gaps = 4/333 (1%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           ++  + +G+   PL V G   + TGT++ F PS   F+  +F YD L  RLRELSFLNS 
Sbjct: 1   FQQIYCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSG 59

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAM 263
           V I L D R  E +     ++GGI+AFV++L+R+K P+ Q        R    I +++AM
Sbjct: 60  VSIRLQDMR-EEDKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAM 118

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WND Y EN+ C+TNNIPQ+DGG HLSG RSALTR + S+++K   SKK K S  GDD R
Sbjct: 119 QWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAR 178

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++
Sbjct: 179 EGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKII 238

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR
Sbjct: 239 DAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGR 298

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           +R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT
Sbjct: 299 NRKNQAILPLKGKILNVEKARFDKMISSQEVGT 331


>gi|164456715|dbj|BAF97850.1| gyrase B subunit [Vibrio pectenicida]
          Length = 277

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 150/279 (53%), Positives = 201/279 (72%), Gaps = 3/279 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVG+SVVNALS  + L+I R G I+  ++ +G    PL VTG   + TGT
Sbjct: 1   NSYKVSGGLHGVGISVVNALSRQVSLKICRGGKIHTQTYHHGEPQAPLSVTGDT-DKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           E+ F PS   F+  +F+YD L  RLRELSFLNS V I LID R  E +     Y+GGI+A
Sbjct: 60  EIRFWPSEGTFTNTEFHYDILAKRLRELSFLNSGVSIKLIDDR-EEDKSDHFMYQGGIQA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+
Sbjct: 119 FVEHLNTNKTPIIEKVFHFNTEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR I S+++K   SKK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRAALTRTINSFMDKEGFSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           EV+S VES + + LS +L EHP EAKI+  K++DA+  R
Sbjct: 239 EVKSAVESVMGEKLSEFLVEHPNEAKIVCSKIIDAARAR 277


>gi|126661929|ref|ZP_01732928.1| DNA topoisomerase IV, subunit B [Flavobacteria bacterium BAL38]
 gi|126625308|gb|EAZ95997.1| DNA topoisomerase IV, subunit B [Flavobacteria bacterium BAL38]
          Length = 365

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 168/386 (43%), Gaps = 38/386 (9%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES----GLHHMIYEVLDNAIDESLEGY 60
           ++ + Y  D+I+ L   + ++ RP MYIG     S    G++ ++ EV+DN IDE + G 
Sbjct: 2   LEQNQYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSPDDGIYILLKEVMDNCIDEFVMGA 61

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
              I VT+  D   TV D GRGIP            +V+ ++++ GGK++ K++K S GL
Sbjct: 62  GKTIEVTI-KDKLVTVRDYGRGIPLGK-------VVDVV-SKMNTGGKYDSKAFKKSVGL 112

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           +GVG   VNALS++ ++   R+       F  G L              GT+V+F+    
Sbjct: 113 NGVGTKAVNALSNFFRVESVRDNQQKAAEFSAGNLTIE-EDVQETTKRKGTKVSFIADEA 171

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           IF    +  + +   L+   +LN  + I    ++           + G++  +      +
Sbjct: 172 IFKNYKYRNEYIIKMLKNYCYLNRGLTIYYNGEK--------YISEFGLKDLLEENIAEE 223

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             +    I ++G    ++I         Y E    F N      GGTHL   R A+ + I
Sbjct: 224 DMVYP-IIHLEGDDIEVAIT---HSKSQYSEEYHSFVNGQNTTQGGTHLGAFREAIVKTI 279

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE---VRSVVE 357
             +  K              D R+   S +S+K+ +P F SQTK KL S++       V 
Sbjct: 280 KEFYNK---------PFEASDIRKSIVSAVSVKVEEPVFESQTKTKLGSTDIGPNGPSVR 330

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVL 383
           +FVND +   L+    + + +     
Sbjct: 331 TFVNDFIKTNLDNFLHKIRKLPMHYC 356


>gi|116069838|gb|ABI13048.2| DNA gyrase subunit B [Pseudomonas sp. DhA-91]
          Length = 300

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 157/303 (51%), Positives = 215/303 (70%), Gaps = 3/303 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMRIVGESE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F PS   F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKPSDQTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGK 413
           PGK
Sbjct: 298 PGK 300


>gi|332272123|gb|AEE38745.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 308

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 231/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARPREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|37931155|gb|AAP69938.1| DNA gyrase subunit beta [Aeromonas sp. 239]
          Length = 320

 Score =  249 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 181/323 (56%), Positives = 238/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FS QTK+KLVS EV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSFQTKDKLVSFEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|4514463|dbj|BAA75430.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514469|dbj|BAA75433.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514477|dbj|BAA75437.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514479|dbj|BAA75438.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514481|dbj|BAA75439.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  249 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 163/306 (53%), Positives = 206/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I R G I+E  + +G     L V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIHRAGQIHEQEYAHGDPQYSLKVVGET-DTSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFNVDILARRLRELSFLNAGVRIVLRDERV--NFEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       +   I++++A++WN+ Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTADTDSGIAVEVALQWNESYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLESENILKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|12060209|dbj|BAB20459.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
          Length = 304

 Score =  249 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 161/307 (52%), Positives = 220/307 (71%), Gaps = 3/307 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DYSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLADC 417
           PGKLADC
Sbjct: 298 PGKLADC 304


>gi|213494431|gb|ACJ48954.1| DNA gyrase subunit B [Pseudomonas putida]
          Length = 334

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 189/337 (56%), Positives = 255/337 (75%), Gaps = 4/337 (1%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           E ++++G+   P+ V G +   TGT + F PS++ F    F++D L  R+RELSFLNS V
Sbjct: 1   EQTYVHGVPQAPMAVVGESE-TTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRW 265
            I L D+RS +       Y+GG+ AFV YL+ +K P+          R++ + +++A++W
Sbjct: 60  GILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFSVQREDGVGVEVALQW 117

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY+E+   +KK+K +  GDD REG
Sbjct: 118 NDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREG 177

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   S +L E+P EAK +V K++DA
Sbjct: 178 LTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDA 237

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R
Sbjct: 238 ARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNR 297

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 RTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|213494443|gb|ACJ48960.1| DNA gyrase subunit B [Pseudomonas monteilii]
          Length = 334

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 189/337 (56%), Positives = 255/337 (75%), Gaps = 4/337 (1%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           E ++++G+   P+ V G +   TGT + F PS++ F    F++D L  R+RELSFLNS V
Sbjct: 1   EQTYVHGVPQAPMAVVGDSE-TTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRW 265
            I L D+RS +       Y+GG+ AFV YL+ +K P+          RD+ + +++A++W
Sbjct: 60  GILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQW 117

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY+E+   +KK+K +  GDD REG
Sbjct: 118 NDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREG 177

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   + +L E+P EAK +V K++DA
Sbjct: 178 LTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDA 237

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R
Sbjct: 238 ARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNR 297

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 RTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|4514447|dbj|BAA75422.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514453|dbj|BAA75425.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 166/306 (54%), Positives = 212/306 (69%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQIHEQEYHHGDPQYPLRVIGET-DNTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TIVRFWPSAETFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKNHLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|164456643|dbj|BAF97814.1| gyrase B subunit [Vibrio brasiliensis]
          Length = 264

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 142/266 (53%), Positives = 195/266 (73%), Gaps = 3/266 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DKTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  E +     ++GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P+++        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VDHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKI 377
           V+S VES + + LS +L E+P EAK+
Sbjct: 239 VKSAVESAMGEKLSEFLVENPTEAKM 264


>gi|146271667|emb|CAL25315.1| DNA gyrase subunit B [Pseudomonas reinekei]
          Length = 304

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 156/304 (51%), Positives = 216/304 (71%), Gaps = 3/304 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKL 414
           PG+ 
Sbjct: 298 PGQT 301


>gi|213494439|gb|ACJ48958.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
          Length = 334

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 188/337 (55%), Positives = 255/337 (75%), Gaps = 4/337 (1%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           E ++++G+   P+ V G +   TGT + F PS++ F    F++D L  R+RELSFLNS V
Sbjct: 1   EQTYVHGVPQAPMAVVGDSE-STGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRW 265
            I L D+RS +       Y+GG+ AFV YL+ +K P+          R++ + +++A++W
Sbjct: 60  GILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQREDGVGVEVALQW 117

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY+E+   +KK+K +  GDD REG
Sbjct: 118 NDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREG 177

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   + +L E+P EAK +V K++DA
Sbjct: 178 LTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDA 237

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R
Sbjct: 238 ARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNR 297

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 RTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|213494437|gb|ACJ48957.1| DNA gyrase subunit B [Pseudomonas parafulva]
          Length = 334

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 190/337 (56%), Positives = 255/337 (75%), Gaps = 4/337 (1%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           E ++++G+   P+ + G +   TGT + F PS+D F    F++D L  R+RELSFLNS V
Sbjct: 1   EQTYVHGVPQAPMEIVGDSE-TTGTHIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRW 265
            I L D+RS +       Y+GG+ AFV YL+ +K P+          R++ + +++A++W
Sbjct: 60  GILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFSVQREDGVGVEVALQW 117

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY+E+   +KK+K S  GDD REG
Sbjct: 118 NDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVSTTGDDAREG 177

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   S +L E+P EAK +V K++DA
Sbjct: 178 LTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDA 237

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R
Sbjct: 238 ARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNR 297

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 RTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|213494441|gb|ACJ48959.1| DNA gyrase subunit B [Pseudomonas mosselii]
          Length = 334

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 189/337 (56%), Positives = 255/337 (75%), Gaps = 4/337 (1%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           E ++++G+   P+ V G +   TGT + F PS++ F    F++D L  R+RELSFLNS V
Sbjct: 1   EQTYVHGVPQAPMAVVGESE-TTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRW 265
            I L D+RS +       Y+GG+ AFV YL+ +K P+          RD+ + +++A++W
Sbjct: 60  GILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQW 117

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY+E+   +KK+K +  GDD REG
Sbjct: 118 NDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREG 177

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   + +L E+P EAK +V K++DA
Sbjct: 178 LTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDA 237

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R
Sbjct: 238 ARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNR 297

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 RTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|213494429|gb|ACJ48953.1| DNA gyrase subunit B [Pseudomonas taiwanensis]
          Length = 334

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 189/337 (56%), Positives = 255/337 (75%), Gaps = 4/337 (1%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           E ++++G+   P+ V G +   TGT + F PS++ F    F++D L  R+RELSFLNS V
Sbjct: 1   EQTYVHGVPQAPMAVVGESE-STGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRW 265
            I L D+RS +       Y+GG+ AFV YL+ +K P+          RD+ + +++A++W
Sbjct: 60  GILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPINSQVFHFNVQRDDGVGVEVALQW 117

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY+E+   +KK+K +  GDD REG
Sbjct: 118 NDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREG 177

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   + +L E+P EAK +V K++DA
Sbjct: 178 LTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDA 237

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R
Sbjct: 238 ARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNR 297

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 RTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|215271412|emb|CAR48195.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271414|emb|CAR48196.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271416|emb|CAR48197.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271418|emb|CAR48198.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271420|emb|CAR48199.1| gyrase B subunit [Vibrio rotiferianus]
          Length = 325

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 181/327 (55%), Positives = 251/327 (76%), Gaps = 3/327 (0%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
           +I+  ++ +G    PL V G     TGT++ F PS++ F+  +F+YD L  RLRELSFLN
Sbjct: 1   HIHTQTYHHGEPQAPLAVVGDTE-QTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLN 59

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLA 262
           S V I L+D+R  +       ++GGI+AFV +L+ +K P+++        R++ I++++A
Sbjct: 60  SGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVA 118

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   SKK K +  GDD 
Sbjct: 119 MQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDA 178

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K+
Sbjct: 179 REGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCTKI 238

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQG
Sbjct: 239 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQG 298

Query: 443 RSRENQAILPLRGKILNVERARFDKML 469
           R+R+NQAILPL+GKILNVE+ARFDKML
Sbjct: 299 RNRKNQAILPLKGKILNVEKARFDKML 325


>gi|32453488|ref|NP_861694.1| DNA topoisomerase II large subunit [Enterobacteria phage RB69]
 gi|32350307|gb|AAP75906.1| gp60plus39 large subunit topoisomerase II [Enterobacteria phage
           RB69]
          Length = 606

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 135/564 (23%), Positives = 226/564 (40%), Gaps = 47/564 (8%)

Query: 40  GLHHMIYEVLDNAIDESLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE---EGI 93
           GL  +I E++DN++DE++     +A+ I V +  +   +V DNGRGIP  L  +   E I
Sbjct: 48  GLVKLIDEIIDNSVDEAIRTSFKFANKIDVQI-KNNQVSVEDNGRGIPQGLVTDQTGEQI 106

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
                  T   AGG F   S + +GG++GVG S+ N  S+          N   ++  NG
Sbjct: 107 PGPVAAWTIPKAGGNFGDDSERKTGGMNGVGSSLTNIFSTLFTGITSDGENEITVNCSNG 166

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISL 210
           +       +       GT+V F P    F          D    RL+ L+ +   ++ + 
Sbjct: 167 M--ENKSWSSKKSKGKGTKVIFTPDFTSFEEHNLSQIYLDITLDRLQTLAVVYPDIKFTF 224

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
             K+  +        + G                     I    D +SI       DG+ 
Sbjct: 225 NGKK-VDGNFKRFAKQFG------------------EDNIIQENDKVSIAFT-TSPDGFR 264

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
              L + NNI  K+GG H+  +   +   +   ++K          V     +E  T ++
Sbjct: 265 H--LTYVNNIHTKNGGHHVECVMDDICEHLLPGIKKK----YKGIEVTKARVKECLTMLM 318

Query: 331 SIK-MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
            I+ M + RF SQTKE+L S+    +      D     + +  L+ + ++  +++A++ R
Sbjct: 319 FIRDMSNMRFDSQTKERLTST-YGDIRNHIQLDAKK--IAQALLKNEALIMPIVEAALAR 375

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
             A      T+       A +   +          + LFL EGDSA G     R RE   
Sbjct: 376 KLAAEKAAETKAAKKATKAKVHKHIKANQCGKDADTTLFLTEGDSAIGYLIDVRDRELHG 435

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
             PLRGK++N     +  M+ ++E+  +    G  +G+ +       Y  I IMTDAD D
Sbjct: 436 GFPLRGKVMNSWGMSYADMMKNKELFDICAITGLILGEKA---ENTNYRNIAIMTDADHD 492

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G       L  FF   P L   G +  +K P+     GK+ ++       E+     +L 
Sbjct: 493 GLGSIYPALLAFFSNWPELFEQGRIRFVKTPVIIAQIGKTQKWFYTVAEYEE--AKDTLP 550

Query: 570 EEIELFCDSKGVISKNDLRNFIDD 593
           +    +    G + K++ R  I +
Sbjct: 551 KHSIRYIKGLGSLEKSEYRKMIQN 574


>gi|75758774|ref|ZP_00738889.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228904158|ref|ZP_04068253.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
 gi|74493784|gb|EAO56885.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228855243|gb|EEM99807.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
          Length = 726

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 154/735 (20%), Positives = 282/735 (38%), Gaps = 95/735 (12%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + +Y  +SI  L+G + V++RP+  +G   G  G  H + E++ N++DE   G+   + +
Sbjct: 5   SQNYGNNSIDSLEGAERVRRRPAAVLGS-SGIEGARHGVTEIVGNSVDEGTAGFGSKLDI 63

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----------------- 109
               DGS ++ D GRG+P   ++ +GIS   ++   ++AGGK+                 
Sbjct: 64  NYFKDGSISIRDYGRGVPMGYNENKGISNWFLVFNEMYAGGKYKDYQEELRAIKDWSTFN 123

Query: 110 -NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF------------------ 150
               +Y  S GL+G+G +     S + +     +G   +M F                  
Sbjct: 124 PTDYNYLFSIGLNGLGAASTQYTSEFFEAISITDGIATKMEFRGGYPILKDANGNEVHAI 183

Query: 151 --------INGILDNP-LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
                    +GI+    +  T     + GT + + P   +FS  D     ++     +++
Sbjct: 184 IGEERLLEEHGIVLKEYVAETYETEEENGTYIHWKPDIRVFSDVDITLGWIKDVCESVAY 243

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           ++      L      E  +    Y+ G  + ++ +   K  + +    +    ++I+   
Sbjct: 244 ISG-----LDVNLYDEATDTMHEYQSGTISDLNLILNEKNLVNEDSPSV-YEDNDITHGN 297

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
             + N+ +        + +  ++ G          T    + ++   G++         D
Sbjct: 298 VKQNNENFIYVFKADVSVVRTREKGK---------TVCFHNAIKMKGGAQYRAVDSAVAD 348

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE------------ 369
              G  +   +K+ +  F  +    + S    +  +    D +                 
Sbjct: 349 FVIGLGNTKGVKVVERDFEGKLGVVVKSYSNVASYKGQTKDEVDDNFIYRDLKTIIYRLI 408

Query: 370 --EHPLEAKIIVKKVL----DASMVRDAARRARDLTRRKGVLDIASLPGKLADC---SER 420
             E+    K I++ V     +A +      +A+ L   K       LP K        E+
Sbjct: 409 NTEYHKGNKDIIEFVDKVLEEAELRITLQEQAKMLREVKKTSRTRKLPEKFLPSKLFKEK 468

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
             KKSEL++VEGDSA  S K  R    QAI  +RGK+ N  +A F K++ S+EI  + + 
Sbjct: 469 IVKKSELWIVEGDSAKTSVKNARDPLFQAIYAVRGKVTNALKASFKKLMESEEIRDIFSL 528

Query: 481 LGTGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           LGTG+       + FDI+  R+ KIII TDAD DG  IR LL   F+   P +I  G LY
Sbjct: 529 LGTGMDVELLDDNEFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPEIIKRGMLY 588

Query: 536 IIKPPLYGITRGKSLQ-----YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           I + P +GI             V   E  ++Y       E  +   +    +        
Sbjct: 589 IGETPKFGIKLSNGEMVYAINEVDKAEREKEYAGQIVKVERYKGLGEVNADVLG--FTTL 646

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +   + ++  D   +    F+E       +    +  + V L S   +  N   EK E
Sbjct: 647 APETRNLIQIKLDPADHILSEFVETLFGKDPYKKRKETMLRV-LGSDAMDMFNDTDEKEE 705

Query: 651 KSWHGSINNSDILVK 665
            S    ++  D+  +
Sbjct: 706 FSIVDVLDADDVEEE 720



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL----FSRLMGDE 784
           RYKGLGE+NA  L  TTL P+TR+L+++K+     AD +       L G +
Sbjct: 629 RYKGLGEVNADVLGFTTLAPETRNLIQIKLD---PADHILSEFVETLFGKD 676


>gi|159117354|ref|XP_001708897.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
 gi|30692178|gb|AAP33503.1| topoisomerase II [Giardia intestinalis]
 gi|157437011|gb|EDO81223.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
          Length = 1491

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 118/658 (17%), Positives = 219/658 (33%), Gaps = 113/658 (17%)

Query: 14  SIQILKGLDAVKKRPSMYIGDTDG---------------------ESGLHHMIYEVLDNA 52
            IQ + G + V  RP MY+G                           GL  +  E++ NA
Sbjct: 6   KIQRVTGSEHVLLRPDMYVGSVSAAETFLWLYEPGQGLYYTKANIVPGLCKIFDEIIVNA 65

Query: 53  ID----------ESLEGYADIITVTLN-MDGSCTVSDNGRGIPTD--LH--KEEGISAAE 97
            D          E        I  +++   G+ +V ++G     +  LH  ++E +    
Sbjct: 66  SDNKQRDSDRSAEHKM---TYIKCSVDVASGAISVENDG----VEGLLHFDEKEKMYLPT 118

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157
           +    L     ++    +V+GG +G G  + N  S+   + ++  G ++E ++ + + + 
Sbjct: 119 LAFGILMTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTVLLQENGQVFEQTWTDNMKNT 178

Query: 158 PLVVTGS--AGNDTGTEVTFLPSSDIFSVQ----DFNYDTLQHRLRELSFLNSSVQISLI 211
                             +F P    F +       +   +  R  +++  N  +++ + 
Sbjct: 179 KPPRIEDVRDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAYMMRRAVDVAGCNIGLKLIIN 238

Query: 212 DKRSPEPREITMFYK----------------GGIEAFVSYLDRHKKPLMQS--------- 246
                                           G  A V+  D      ++S         
Sbjct: 239 GTELKIANFEQYARMVYRSINPEITQFYETSKGDTAQVNTNDSDSDLDIKSAAKAKPKTK 298

Query: 247 -------------------------PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
                                       ++    N   D+ + + D      + F N+I 
Sbjct: 299 RTKKTIETNSLLIPVDDLSKPSDWTHDYLKVIPVNKFWDIGLGYTDSGELVQVSFVNSIN 358

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMPDPRFS 340
             DGGTH+  +   +  Q+   + KSF       + +     +      +   + +P F 
Sbjct: 359 TTDGGTHVDAILDLIMSQLNDVLIKSFQQDAKNAKKLTRQQLKSCLVLFIRSLVVNPSFD 418

Query: 341 SQTKEKLVSSEVRSVVE----SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           SQTK  L + +   +            L+  L +   E + +   +  AS  + A    +
Sbjct: 419 SQTKISLKTDKAALLRSLGSTQAELATLATQLVKRIQEIRPLWNSLRQASYNQAAKLLTK 478

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS-----RENQAIL 451
               +   L              R+  K  L L EGDSA   A  G S     ++   + 
Sbjct: 479 TDGSKTSQLLGIPKLDDAIAAGTRESSKCTLILTEGDSAKALAVDGISSIEDGKKYYGVF 538

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN---KLRYHKIIIMTDADV 508
           PLRGK++NV     DK+ ++ EI  L   LG   G D         LRY  ++IMTD D 
Sbjct: 539 PLRGKVINVRNESIDKVSNNAEITNLKKILGLKQGMDYSTQEARNTLRYGHVMIMTDQDP 598

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLY-IIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           DG+HI+ LL+  F      L  +         P+   T+ ++++        + +   
Sbjct: 599 DGSHIKGLLINLFDTYWNGLARSNKFLDFFITPIVRCTQARNMKTFYTIPEYKKWTQT 656


>gi|30793712|gb|AAM52918.1| DNA gyrase subunit beta [Aeromonas schubertii]
          Length = 320

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 185/323 (57%), Positives = 242/323 (74%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R+G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I + D+R  + RE+   Y+GGI+AFV YL++ K P+ Q        +D I ++
Sbjct: 60  FLNSGVSIRVSDER--DGREVHFCYEGGIKAFVEYLNQSKTPIHQKVFHFSADQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WNDGY E V CFTNNIPQ+DGGTHL+G R+ALTR + SY+++   S+K K S  GD
Sbjct: 118 VAMQWNDGYQEGVYCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDQEDYSQKAKTSASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D RE   +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + D L+ +L E+P +AKI+V 
Sbjct: 178 DVREALVAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGDKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|261362390|gb|ACX71596.1| DNA gyrase subunit B [Pseudomonas cremoricolorata]
          Length = 333

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 183/336 (54%), Positives = 251/336 (74%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
           +  G I+E ++++G+   P+ + G +   TGT + F PS++ F    F++D L  R+REL
Sbjct: 1   RHNGWIWEQTYVHGVPQAPMAIVGESE-TTGTHIHFKPSAETFKNIHFSWDILAKRIREL 59

Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-IS 258
           SFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+          R++ + 
Sbjct: 60  SFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVNAQVFHFSVQREDGVG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY+E+   +KK+K S  
Sbjct: 118 VEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVSTT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   S +L E+P EAK +
Sbjct: 178 GDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFSDFLLENPNEAKAV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGS
Sbjct: 238 VGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGS 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+
Sbjct: 298 AKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 333


>gi|116069856|gb|ABI13057.2| DNA gyrase subunit B [Pseudomonas pseudoalcaligenes]
          Length = 304

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 160/307 (52%), Positives = 221/307 (71%), Gaps = 4/307 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             +YKVSGGLHGVGVSVVNALS  L+L I+R G ++E  + +G+   PL   G   + TG
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELRLTIRRAGQVWEQIYRHGVPQFPLRAVGET-DGTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEV F  S++ F+   F++D L  RLRELSFLNS V I L D+RS +       Y+GG++
Sbjct: 60  TEVHFKASAETFTNIHFSWDILAKRLRELSFLNSGVGILLRDERSGKE--EMFKYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV YL+ +K  + +     IQ   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL
Sbjct: 118 AFVEYLNTNKTIVNEVFHFNIQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVS
Sbjct: 178 AGFRSALTRHLNNYIEQEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 SEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 297

Query: 410 LPGKLAD 416
           LPGKLAD
Sbjct: 298 LPGKLAD 304


>gi|228930728|ref|ZP_04093706.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828975|gb|EEM74634.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 723

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 154/735 (20%), Positives = 282/735 (38%), Gaps = 95/735 (12%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
           + +Y  +SI  L+G + V++RP+  +G   G  G  H + E++ N++DE   G+   + +
Sbjct: 2   SQNYGNNSIDSLEGAERVRRRPAAVLGS-SGIEGARHGVTEIVGNSVDEGTAGFGSKLDI 60

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----------------- 109
               DGS ++ D GRG+P   ++ +GIS   ++   ++AGGK+                 
Sbjct: 61  NYFKDGSISIRDYGRGVPMGYNENKGISNWFLVFNEMYAGGKYKDYQEELRAIKDWSTFN 120

Query: 110 -NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF------------------ 150
               +Y  S GL+G+G +     S + +     +G   +M F                  
Sbjct: 121 PTDYNYLFSIGLNGLGAASTQYTSEFFEAISITDGIATKMEFRGGYPILKDANGNEVHAI 180

Query: 151 --------INGILDNP-LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
                    +GI+    +  T     + GT + + P   +FS  D     ++     +++
Sbjct: 181 IGEERLLEEHGIVLKEYVAETYETEEENGTYIHWKPDIRVFSDVDITLGWIKDVCESVAY 240

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
           ++      L      E  +    Y+ G  + ++ +   K  + +    +    ++I+   
Sbjct: 241 ISG-----LDVNLYDEATDTMHEYQSGTISDLNLILNEKNLVNEDSPSV-YEDNDITHGN 294

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
             + N+ +        + +  ++ G          T    + ++   G++         D
Sbjct: 295 VKQNNENFIYVFKADVSVVRTREKGK---------TVCFHNAIKMKGGAQYRAVDSAVAD 345

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE------------ 369
              G  +   +K+ +  F  +    + S    +  +    D +                 
Sbjct: 346 FVIGLGNTKGVKVVERDFEGKLGVVVKSYSNVASYKGQTKDEVDDNFIYRDLKTIIYRLI 405

Query: 370 --EHPLEAKIIVKKVL----DASMVRDAARRARDLTRRKGVLDIASLPGKLADC---SER 420
             E+    K I++ V     +A +      +A+ L   K       LP K        E+
Sbjct: 406 NTEYHKGNKDIIEFVDKVLEEAELRITLQEQAKMLREVKKTSRTRKLPEKFLPSKLFKEK 465

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
             KKSEL++VEGDSA  S K  R    QAI  +RGK+ N  +A F K++ S+EI  + + 
Sbjct: 466 IVKKSELWIVEGDSAKTSVKNARDPLFQAIYAVRGKVTNALKASFKKLMESEEIRDIFSL 525

Query: 481 LGTGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535
           LGTG+       + FDI+  R+ KIII TDAD DG  IR LL   F+   P +I  G LY
Sbjct: 526 LGTGMDVELLDDNEFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPEIIKRGMLY 585

Query: 536 IIKPPLYGITRGKSLQ-----YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
           I + P +GI             V   E  ++Y       E  +   +    +        
Sbjct: 586 IGETPKFGIKLSNGEMVYAINEVDKAEREKEYAGQIVKVERYKGLGEVNADVLG--FTTL 643

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650
             +   + ++  D   +    F+E       +    +  + V L S   +  N   EK E
Sbjct: 644 APETRNLIQIKLDPADHILSEFVETLFGKDPYKKRKETMLRV-LGSDAMDMFNDTDEKEE 702

Query: 651 KSWHGSINNSDILVK 665
            S    ++  D+  +
Sbjct: 703 FSIVDVLDADDVEEE 717



 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL----FSRLMGDE 784
           RYKGLGE+NA  L  TTL P+TR+L+++K+     AD +       L G +
Sbjct: 626 RYKGLGEVNADVLGFTTLAPETRNLIQIKLD---PADHILSEFVETLFGKD 673


>gi|18147141|dbj|BAB83051.1| DNA gyrase subunit B [Halomonas cupida]
          Length = 297

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 208/299 (69%), Gaps = 3/299 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  LKL I R G ++E  + +G+ ++PL V G     TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELKLTIWRAGKVHEQIYRHGVPESPLSVVGQTE-QTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           + V F PS + F+  +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++
Sbjct: 60  SRVHFRPSPETFANIEFHYDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLK 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV +L+ +K  L           D +++++AM+WND + EN+ C+TNNIPQ+DGGTHL+
Sbjct: 118 AFVDHLNTNKTVLNPVFHFNVEREDGVAVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R++LTR +  Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRASLTRTLNHYIEAEGLLKKTKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           EV++ VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA 
Sbjct: 238 EVKTAVEQELGRSFSEYLVEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAG 296


>gi|116069836|gb|ABI13047.2| DNA gyrase subunit B [Burkholderia sp. DhA-54]
          Length = 309

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 156/312 (50%), Positives = 212/312 (67%), Gaps = 15/312 (4%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPL 159
            SYKVSGGLHGVGVS VNALS+WL+L I+R+G  + M F  G+              +P+
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPI 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
            VTG    + GTEV FL    IF   +++YD L  R+RELSFLN+ V+I L D+R+ +  
Sbjct: 61  QVTGDTE-NRGTEVHFLADETIFGNIEYHYDILAKRIRELSFLNNGVRIKLTDQRTGKE- 118

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                + GG++ FV Y++++K  L  +   I G +D + +++AM+WND Y+ENVLCFTNN
Sbjct: 119 -EDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVLCFTNN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           IPQ+DGGTHL+GLR+A+TR +  Y+     +KK K    GDD REG + VLS+K+P+P+F
Sbjct: 178 IPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKF 237

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
           S+QTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K++DA+  RDAAR+AR++T
Sbjct: 238 SAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICGKIVDAARARDAARKAREMT 297

Query: 400 RRKGVLDIASLP 411
           RRKGVLD   LP
Sbjct: 298 RRKGVLDGVGLP 309


>gi|304373561|ref|YP_003858306.1| gp39plus60 DNA topoisomerase II large subunit [Enterobacteria phage
           RB16]
 gi|299829517|gb|ADJ55310.1| gp39plus60 DNA topoisomerase II large subunit [Enterobacteria phage
           RB16]
          Length = 631

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 147/612 (24%), Positives = 247/612 (40%), Gaps = 72/612 (11%)

Query: 18  LKGLDAVKKRPSMYIGDTDGE----------------SGLHHMIYEVLDNAIDESLE--- 58
           L   D ++KRP+MY+G  + E                 GL  +I E+LDN+IDE++    
Sbjct: 30  LSDRDHIRKRPNMYVGSVNREAHERFIQGKFRKVEYVEGLVKIINEILDNSIDEAIRTDF 89

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLH--KEEG-ISAAEVIMTRLHAGGKFNQKSYK 115
            +A+ I V ++     T+SDNGRGIP D     E   +       T   +G  F+ ++ +
Sbjct: 90  KFANKIEVKIDH-NLVTISDNGRGIPQDDVRTPEGKIVPKPVAAWTMAKSGSNFDDEN-R 147

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           V+ G++GVG  + N  SS              ++  +G     +    S   + GT V F
Sbjct: 148 VTMGMNGVGSFLTNCYSSIFIGETSNGKRKVTINCTDG--AQNMDYRTSPTKEQGTTVKF 205

Query: 176 LPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            P   IF V   + +T   ++ RL  L+    SV+ +  ++  P          G +   
Sbjct: 206 TPDFSIFGVDGIDEETKEVIKDRLMALAVAFPSVKFTYNNEVLPNK----FAMYGAMYGE 261

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            + +  + K                   +     DG+ +    F N +  K+GG H+  +
Sbjct: 262 KTIVQTNNKISF----------------ILASTEDGFKQK--SFVNGLDTKNGGVHVDCM 303

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD-PRFSSQTKEKLVSS- 350
              +  ++   ++K    +  K        +E  T V+ +   + P F SQTKEKL ++ 
Sbjct: 304 IDGIYTELEPMIKKKHAIEIPKAR-----VKECLTLVVFLHNFNAPAFDSQTKEKLTNTA 358

Query: 351 -EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            E  +         ++  + +       I++  L      +AA   +   + K       
Sbjct: 359 GEFNNH-AGLNYKKIAKQIMDTSEIITPIIESALIRKQAAEAAAITKAKKKAKKAKVAKH 417

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           +P    D    D  ++ LFL EGDSA G   + R+ E Q   PLRGK LN        +L
Sbjct: 418 VPASGIDT---DGVETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSNSDIL 474

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            ++E+  L+  L    G      +++ Y  I IM DADVDG  I TLL+ FF R  P L 
Sbjct: 475 KNKELFELMAILNLHPGDS----SEMTYDNIGIMVDADVDGGDILTLLIAFFSR-WPELF 529

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
               +  I+ P+     G+  ++    +    +        +   +    G + K D   
Sbjct: 530 AKKKIRYIRTPIIIAKVGREEKWFYSLDDFTPFRDK----AKEARYIKGLGSLRKEDYDR 585

Query: 590 FIDDALKIDKLI 601
            + D LK D ++
Sbjct: 586 VLGDQLKYDTIV 597


>gi|213494435|gb|ACJ48956.1| DNA gyrase subunit B [Pseudomonas fulva]
          Length = 334

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 189/337 (56%), Positives = 255/337 (75%), Gaps = 4/337 (1%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           E ++++G+   P+ + G +   TGT + F PS++ F    F++D L  R+RELSFLNS V
Sbjct: 1   EQTYVHGVPQAPMAIVGESE-TTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRW 265
            I L D+RS +       Y+GG+ AFV YL+ +K P+          R++ + +++A++W
Sbjct: 60  GILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVNAQVFHFSVQREDGVGVEVALQW 117

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY+E+   +KK+K S  GDD REG
Sbjct: 118 NDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVSTTGDDAREG 177

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   S +L E+P EAK +V K++DA
Sbjct: 178 LTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDA 237

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAGGSAKQGR+R
Sbjct: 238 ARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNR 297

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG
Sbjct: 298 RTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|4514449|dbj|BAA75423.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 166/306 (54%), Positives = 212/306 (69%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L L I R G I+E  + +G    PL V G   ++TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQIHEQEYHHGDPQFPLRVIGET-DNTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TIVRFWPSAETFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKNHLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|307343850|emb|CBJ19530.1| gyrase B subunit [Micromonospora sp. SG15]
          Length = 365

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 161/369 (43%), Positives = 235/369 (63%), Gaps = 9/369 (2%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           + + I + G ++   + N     PL   G   + TG+ V+F P  D+F   DF++ T+  
Sbjct: 1   MAVEIHKSGFVWRQQYNNSKP-GPLDK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYR 58

Query: 195 RLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           RL+E++FLN +++I L+D+R  E      RE+T  Y+GGI  FV +L+  K P+ ++ + 
Sbjct: 59  RLQEMAFLNRALRIHLLDERVAEEENGRQREVTFLYEGGIADFVRHLNASKNPIHKTVVE 118

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y      
Sbjct: 119 FAAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK- 177

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
             K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W +
Sbjct: 178 LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFD 237

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+
Sbjct: 238 RNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFI 297

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D 
Sbjct: 298 VEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDD 356

Query: 490 FDINKLRYH 498
           FD+ KLRYH
Sbjct: 357 FDMEKLRYH 365


>gi|315439564|gb|ADU19854.1| DNA gyrase subunit B [Xanthomonas campestris pv. raphani]
 gi|315439566|gb|ADU19855.1| DNA gyrase subunit B [Xanthomonas campestris pv. raphani]
 gi|315439568|gb|ADU19856.1| DNA gyrase subunit B [Xanthomonas campestris pv. raphani]
          Length = 257

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 136/253 (53%), Positives = 176/253 (69%), Gaps = 2/253 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EA 59

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT + F P+ +IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y
Sbjct: 60  STKRGTTLRFKPAVEIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDG
Sbjct: 119 EGGIRSFVEHLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R ALTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKE
Sbjct: 179 GTHLAGFRGALTRVLSNYIEQNGIAKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKE 238

Query: 346 KLVSSEVRSVVES 358
           KLVSS+VR  VE+
Sbjct: 239 KLVSSDVRPAVEN 251


>gi|190569899|dbj|BAG48907.1| DNA gyrase subunit B [Bartonella vinsonii subsp. vinsonii]
          Length = 325

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 206/325 (63%), Positives = 266/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF +G+ D+PL + G    ++GTE+ FLPSS+ F++ +F++DTL+ RLREL+FLN
Sbjct: 1   KIHEMSFTHGVADSPLSIIGDCDTESGTEIRFLPSSETFTMVEFDFDTLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S + I L+D+R  + R + + Y+GG+  FV Y+D+ KK L+ +PI I   +D +S+D+A+
Sbjct: 61  SGIHILLVDERHADIRSVELHYEGGLIEFVKYIDQTKKALLDNPIYIASEKDGMSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEE P EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEPPNEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|244537694|emb|CAX15421.1| gyrase B [Micromonospora pattaloongensis]
          Length = 369

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 166/372 (44%), Positives = 233/372 (62%), Gaps = 10/372 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G ++   + N    +PL   G   + TG+ V F P  DIF   +F+++T+  RL
Sbjct: 2   VEIHKTGFVWRQQYQNSKP-SPLDK-GEPTDRTGSAVAFWPDPDIFETVEFSFETIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           +E++FLN  + I L D+R      EPR++T  Y GGI  FV +L+  K P+ +S +    
Sbjct: 60  QEMAFLNRGLTIRLRDERAREEDGEPRQVTFCYAGGIADFVRHLNASKNPIHKSVVEFGA 119

Query: 253 SRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
                 +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  I  Y       
Sbjct: 120 EDPEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVINKYGADKK-L 178

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
            K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V    N+ L  WL+ 
Sbjct: 179 LKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVLRICNEWLVDWLDR 238

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P EAK I+ K   A+  R AA +AR L RRK +L+  S+PGKLADC   DP++SE+F+V
Sbjct: 239 NPAEAKTIITKASQAARARIAAAQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIV 298

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D F
Sbjct: 299 EGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDF 357

Query: 491 DINKLRYHKIII 502
           DI KLRYHKI++
Sbjct: 358 DIEKLRYHKILL 369


>gi|190569895|dbj|BAG48905.1| DNA gyrase subunit B [Bartonella vinsonii subsp. arupensis]
          Length = 325

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 206/325 (63%), Positives = 267/325 (82%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF +G+ D+PL V G    ++GTE+ FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTHGVADSPLSVIGDCDTESGTEIRFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S + I L+D+R  + + + + Y+GG+  FV Y+D+ KK L+ +PI I   +D +S+D+A+
Sbjct: 61  SGIHILLVDERHADIQSVELHYEGGLIEFVKYIDQTKKALLDNPIYIASEKDGMSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|12060207|dbj|BAB20458.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
          Length = 303

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 160/306 (52%), Positives = 219/306 (71%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DYSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ 
Sbjct: 60  TQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|285026261|dbj|BAI67859.1| DNA gyrase B [Rubritalea sp. shu-10-MA45-1]
          Length = 360

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 165/360 (45%), Positives = 223/360 (61%), Gaps = 15/360 (4%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD-FNY 189
           S W K  + REG ++ ++F  G    PL V G A +  TGT+VTF P + IF     F +
Sbjct: 1   SDWFKAEVTREGKVHLITFERGKTKQPLKVIGDAPSGKTGTKVTFFPDATIFVDTIEFEF 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLREL+FLN  + I L D+   + R+ T FY  GIE FV  L + K  + +SP+ 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDENPEKTRKETFFYARGIEEFVEQLSQSKTTVHESPVI 120

Query: 250 IQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + G R            D++  D+  ++ND Y +N+LC+ N+IP  DGG HL+G R ALT
Sbjct: 121 LHGKRKVEIDYDGKVVEDDVFADIVFQYNDSYQDNILCYANSIPNADGGAHLTGFRGALT 180

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y + +   K    ++ GDD REG   V+S+KMP+PRFSSQTK+KLV++E+  VV 
Sbjct: 181 RSINQYAKVNKILKDKDPALSGDDVREGIICVISVKMPNPRFSSQTKDKLVNAEIEGVVG 240

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V +GL  + +E+P  AK I+ K +  +     A R    T RK V+    LPGKLADC
Sbjct: 241 SIVYEGLQTYFDENPNLAKQIIDKAV-NAXRAREAARKARETVRKSVMSGGGLPGKLADC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERDP KSE+++VEGDSAGGSAK GR+R  QAILPLRGK++NVE+AR  K L ++EI  +
Sbjct: 300 SERDPAKSEIYIVEGDSAGGSAKSGRNRLTQAILPLRGKVINVEKARLHKALQNREIQAM 359


>gi|110225002|dbj|BAE97490.1| DNA gyrase subunit B [Streptococcus phocae]
          Length = 300

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 127/300 (42%), Positives = 191/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS  L +R+ + G+IY   F  G + N L + G   + +G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSKQLDVRVYKNGHIYYQEFKQGAVINDLSIIG-TTDLSG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F+Y+ L  R++EL+FLN  ++IS+ D R    +E    Y+GGI
Sbjct: 60  TAVHFTPDPEIFTETTEFDYNVLSKRIQELAFLNRGLKISIKDSRPGSEQEEHFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+  K  + ++PI   G  D I++++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 GSYVGFLNDKKDVIFETPIYTDGELDGITVEVAMQYTTGYHELVISFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D    +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDAFQRFLLENPQVARRIVEKGILASKARVAAKRAREVTRKKSGLEISN 299


>gi|61506752|dbj|BAD91126.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506754|dbj|BAD91127.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506763|dbj|BAD91130.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506766|dbj|BAD91131.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506769|dbj|BAD91132.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506772|dbj|BAD91133.1| DNA gyrase subunit B [Burkholderia glumae]
          Length = 315

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 161/318 (50%), Positives = 215/318 (67%), Gaps = 15/318 (4%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNP 158
           Q S KVSGGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P
Sbjct: 1   QNSLKVSGGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + V G    + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS + 
Sbjct: 61  MEVVGETE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE 119

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 + GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTN
Sbjct: 120 --DDFAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTN 177

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+
Sbjct: 178 NIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPK 237

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEVR+ VE  V   L  +L E P +AKII  K+++A+  RDAAR+AR++
Sbjct: 238 FSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAARKAREM 297

Query: 399 TRRKGVLDIASLPGKLAD 416
           TRRKGVLD   LPGKLAD
Sbjct: 298 TRRKGVLDGVGLPGKLAD 315


>gi|37931153|gb|AAP69937.1| DNA gyrase subunit beta [Aeromonas sp. 665c]
          Length = 320

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 181/323 (56%), Positives = 237/323 (73%), Gaps = 3/323 (0%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+F  QTK+KLVS EV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFFFQTKDKLVSFEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAK
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERA 463
           QGR+R+NQAILPL+GKILNVE+A
Sbjct: 298 QGRNRKNQAILPLKGKILNVEKA 320


>gi|188090428|gb|ACD49448.1| gyrase subunit B [Xanthomonas vasicola]
          Length = 288

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 140/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   + 
Sbjct: 61  DDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLT 120

Query: 615 QAVISGVFNCESDQEI-----NVSLASKLANRLNFIAEKSEKSWHGSINNS--DILVKRI 667
             +     + E  Q        +     + NR      + +  +  +  N+   ++  R 
Sbjct: 121 ALIDLPPLDVEKLQAEGDHHPTLDALQAVLNRGTLGTARYQLRFDPATENAPATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  S  + +       ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITNFAQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR  L+ +I DA  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRPLQGRIEDAVAADQ 288


>gi|92918980|gb|ABE96838.1| DNA gyrase subunit B [Aeromonas molluscorum]
          Length = 321

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 183/324 (56%), Positives = 240/324 (74%), Gaps = 4/324 (1%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + N TGTEV F PS+ IF+   ++YD L  RLRELS
Sbjct: 1   RNGHVYEQTYHMGEPQAPLKQIGDS-NGTGTEVRFWPSATIFTDTLYHYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L  +   + RE+   Y+GGI+AFV YL+++K P+ Q        +D I ++
Sbjct: 60  FLNSGVSIRL--EVERDGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IG 319
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y+++   SKK K S   G
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDREDYSKKAKMSAASG 177

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V
Sbjct: 178 DDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVV 237

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSA
Sbjct: 238 NKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 297

Query: 440 KQGRSRENQAILPLRGKILNVERA 463
           KQGR+R+NQAILPL+GKILNVERA
Sbjct: 298 KQGRNRKNQAILPLKGKILNVERA 321


>gi|92918984|gb|ABE96840.1| DNA gyrase subunit B [Aeromonas molluscorum]
 gi|92919021|gb|ABE96857.1| DNA gyrase subunit B [Aeromonas molluscorum]
 gi|92919023|gb|ABE96858.1| DNA gyrase subunit B [Aeromonas molluscorum]
 gi|92919025|gb|ABE96859.1| DNA gyrase subunit B [Aeromonas molluscorum]
          Length = 321

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 185/324 (57%), Positives = 242/324 (74%), Gaps = 4/324 (1%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G + N TGTEV F PS+ IF+   ++YD L  RLRELS
Sbjct: 1   RNGHVYEQTYHMGEPQAPLKQIGDS-NGTGTEVRFWPSATIFTDTLYHYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D I ++
Sbjct: 60  FLNSGVSIRLEDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IG 319
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y+++   SKK K S   G
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDREDYSKKAKMSAASG 177

Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379
           DD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V
Sbjct: 178 DDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVV 237

Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439
            K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSA
Sbjct: 238 NKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 297

Query: 440 KQGRSRENQAILPLRGKILNVERA 463
           KQGR+R+NQAILPL+GKILNVERA
Sbjct: 298 KQGRNRKNQAILPLKGKILNVERA 321


>gi|161339252|gb|ABX64377.1| GyrB [Gordonia amicalis]
          Length = 391

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 157/393 (39%), Positives = 223/393 (56%), Gaps = 37/393 (9%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS+ ++L I R+G+ +  ++        L   G A   TGT V F P   IF+  
Sbjct: 1   SVVNALSTKVELEIARDGHNWAQTYSYAKP-GALEQ-GDATRKTGTTVRFWPDPQIFTET 58

Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------------------- 216
             FN +T+  RL+E++FLN  + I+L D+R                              
Sbjct: 59  TRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDEDAPATDVAEVVLTETE 118

Query: 217 ------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                 +P+  T  Y  G+  ++ +L+R K+ +  + I      +   +++AM+WN GY 
Sbjct: 119 KAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGHEVEIAMQWNAGYS 178

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + GDD REG  +V+
Sbjct: 179 ESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREGLAAVI 238

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAKII+KK  D++  R 
Sbjct: 239 SAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKKAADSAQARM 298

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK GR    QAI
Sbjct: 299 AARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQAI 358

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           LPLRGKI+NVE+AR D++L + E+ ++ITA GT
Sbjct: 359 LPLRGKIINVEKARIDRVLKNAEVQSIITAFGT 391


>gi|190569879|dbj|BAG48897.1| DNA gyrase subunit B [Bartonella grahamii]
          Length = 325

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 205/325 (63%), Positives = 265/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+E+SF +G+ D PL V G    ++GTE+ FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHEISFTHGVADAPLKVIGDCDKESGTEIRFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L+D+R  + + + + Y+GG+  FV Y+D+ KK L+ +PI I   +D +S+D+A+
Sbjct: 61  SGVYILLVDERHADTKSVELHYEGGLTEFVKYIDQSKKALLDNPIYIASEKDGMSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLS WLEEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSVWLEEHPHEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|190569883|dbj|BAG48899.1| DNA gyrase subunit B [Bartonella phoceensis]
          Length = 325

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 201/325 (61%), Positives = 266/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            +++MSF +G+ D+PL + G    ++GTE+ FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KVHKMSFTHGVADSPLKIVGDCDTESGTEIRFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S + I L+D+R  + + + + Y+GG+  FV Y+D+ KK L+ +PI I   +D +++D+A+
Sbjct: 61  SGIHILLVDERHADIQSVELHYEGGLIEFVKYIDQTKKALLDTPIYITSEKDGMNVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLS WLEEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSIWLEEHPNEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|148762385|dbj|BAF63894.1| DNA gyrase subunit B [Halobacillus sp. JM-Hb]
 gi|148762455|dbj|BAF63929.1| DNA gyrase subunit B [Virgibacillus sp. M7]
          Length = 329

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 144/332 (43%), Positives = 203/332 (61%), Gaps = 8/332 (2%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTE 172
           YKVSGGLHGVG SVVNALS WL++ I R+G  +   F N G+    L   G A   TGT 
Sbjct: 1   YKVSGGLHGVGASVVNALSEWLEVYICRDGEKFYQRFENGGVPVTSLENKG-ATRKTGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P   IFS+  FN++TL  RLRE + L    +I L+D+R  E  +    Y  G+ +F
Sbjct: 60  IRFKPDPSIFSMTKFNFETLSERLREAALLLKGFRIILVDER-KETVKEEYQYDDGLVSF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+  K  L    +  +GS   I  D A ++NDG+ EN+L F NN+  KDGGTH SG 
Sbjct: 119 VEYLNEEKDTLHS-VVSFEGSHSGIEADFAFQFNDGFAENILSFVNNVRTKDGGTHESGA 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSS 350
           ++A+TR    Y  ++   K   +++ G+D REGFT+V+S+++P+   +F  QTK KL +S
Sbjct: 178 KTAITRVFNDYARRAQLLKDKDKNLEGNDIREGFTAVISVRIPEELLQFEGQTKSKLGTS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIA 408
           E RS V+  V + LS +LEE+P  A +++KK + A   R+AAR+AR+   + +K      
Sbjct: 238 EARSAVDGIVAEQLSYFLEENPDVASMLIKKAIKAKEAREAARKAREDARSGKKKKRKDT 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
            L GKL     ++ +K+EL+LVEGDSAGGSAK
Sbjct: 298 LLSGKLTPAQSKNAQKNELYLVEGDSAGGSAK 329


>gi|66391456|ref|YP_238981.1| DNA-dependent ATPase [Enterobacteria phage RB43]
 gi|62288544|gb|AAX78527.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB43]
          Length = 630

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 149/612 (24%), Positives = 247/612 (40%), Gaps = 72/612 (11%)

Query: 18  LKGLDAVKKRPSMYIGDTDGE----------------SGLHHMIYEVLDNAIDESLE--- 58
           L   D ++KRP+MY+G  + E                 GL  +I E+LDN+IDE++    
Sbjct: 30  LSDRDHIRKRPNMYVGSVNREAHERFIMGKFRKVEYVEGLVKIINEILDNSIDEAIRTDF 89

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLH--KEEG-ISAAEVIMTRLHAGGKFNQKSYK 115
            +A+ I V ++     T+SDNGRGIP D     E   +       T   +G  F+ ++ +
Sbjct: 90  KFANRIEVKIDH-NLVTISDNGRGIPQDDVRTPEGKIVPKPVAAWTMAKSGSNFDDEN-R 147

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           V+ G++GVG  + N  SS              ++  +G     +    S   + GT V F
Sbjct: 148 VTMGMNGVGSFLTNCYSSIFIGETSNGKRKVTINCTDG--AQNMDYRTSPTKEQGTTVKF 205

Query: 176 LPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            P   IF V   + +T   ++ RL  L+    SV+ +   +  P          G +   
Sbjct: 206 TPDFSIFGVDGIDEETKEVIKDRLMALAVAFPSVKFTYNGETLPNK----FAMYGAMYGD 261

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            +    + K                   +     DG+ +    F N +  K+GG H+  +
Sbjct: 262 STITQTNNKISF----------------ILASTEDGFKQK--SFVNGLDTKNGGVHVDCM 303

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD-PRFSSQTKEKLVSS- 350
              +  ++   ++K    +  K        +E  T V+ +   + P F SQTKEKL ++ 
Sbjct: 304 IDGIYAELEPMIKKKHAIEIPKAR-----VKECLTLVVFLHNFNAPAFDSQTKEKLTNTA 358

Query: 351 -EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            E  +         ++  + +       I++  L      +AA   +   + K       
Sbjct: 359 GEFNNH-AGLNYKKIAKQIMDTSEIITPIIESALIRKQAAEAAAITKAKKKAKKAKIAKH 417

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469
           +P    D    D  ++ LFL EGDSA G   + R+ E Q   PLRGK LN     F  +L
Sbjct: 418 VPASGIDT---DGVETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSFTDIL 474

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            ++E+  L+  L    G      +++ Y  I IM DADVDG  I TLL+ FF R  P L 
Sbjct: 475 KNKELFELMAILNLHPGDS----SEMAYDNIGIMVDADVDGGDILTLLIAFFSR-WPELF 529

Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
               +  I+ P+     GK  ++    +    +        +   +    G + K+D   
Sbjct: 530 EKKKIRYIRTPIIIAKIGKDEKWFYSMDDFVPFRDK----AKEVRYIKGLGSLRKSDYDR 585

Query: 590 FIDDALKIDKLI 601
            + D LK D ++
Sbjct: 586 VLGDQLKYDTIV 597


>gi|328497269|dbj|BAK18798.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 281

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 7/281 (2%)

Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557
           H+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ 
Sbjct: 1   HRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDA 60

Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617
           +L  YL + ++     +    +  I+   L   +      ++ I      +D   +   +
Sbjct: 61  ALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALI 120

Query: 618 ISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARG 670
                + +  Q              + NR      + +  +  + +  ++ ++  R   G
Sbjct: 121 DLPPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMG 180

Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730
            +   VL   +  S   +  R  S  + +       ++       IT        +    
Sbjct: 181 EEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEA 240

Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA 
Sbjct: 241 KRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAV 281


>gi|209407290|emb|CAP72530.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 295

 Score =  248 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 155/298 (52%), Positives = 214/298 (71%), Gaps = 3/298 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I+REG ++E ++ +G+   PL   G     +GTE+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEELVLTIRREGKVWEQTYRHGVPQAPLASVGETE-GSGTEIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+Y
Sbjct: 60  KPSAETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERNAKE--ELFKYEGGLSAFVTY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+ +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSA
Sbjct: 118 LNTNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 LTRNLNNYIEQEGLAKKHKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           VE  +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGK
Sbjct: 238 VEQEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 295


>gi|190569873|dbj|BAG48894.1| DNA gyrase subunit B [Bartonella elizabethae]
          Length = 325

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 205/325 (63%), Positives = 264/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+E+SF +G+ D PL V G    ++GTE+ FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHEISFTHGVADAPLKVVGDCDQESGTEIRFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L+D+R  + + + + Y+GG+  FV Y+D+ KK L+ +PI I   +D + +D+A+
Sbjct: 61  SGVHILLVDERHADIQSVELHYEGGLTEFVKYIDQSKKALLDTPIYIASEKDGMGVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR VVE+ VN+GLS WLEEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNEGLSIWLEEHPNEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|62084142|dbj|BAD91452.1| DNA gyrase subunit B [Streptococcus parauberis]
 gi|110224998|dbj|BAE97488.1| DNA gyrase subunit B [Streptococcus parauberis]
          Length = 300

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 129/300 (43%), Positives = 196/300 (65%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALSS L +R+ + G+I+   F  GI+ + L + G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSSQLDVRVFKNGSIHYQEFKRGIVYDDLKIIGET-DLTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+   +F+++ L  R++EL+FLN  ++IS+ DKR+   +     Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLAKRVQELAFLNRGLRISIADKRNGIEQVKDYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+  K  +++ PI   G  D I++++AM++  GYHENV+ F NNI   +GGTH 
Sbjct: 120 ASYVEFLNEKKDVIIEHPIFTDGEMDGIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D L  +L E+P  A+ IV K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDALQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|190569901|dbj|BAG48908.1| DNA gyrase subunit B [Bartonella washoensis]
          Length = 325

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 205/325 (63%), Positives = 266/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF +G+ D+PL + G    ++GTE+ FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTHGVADSPLKIIGDCDAESGTEIRFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L+D+R  + + + + Y+GG+  FV Y+D+ KK L+ +PI I   +D +S+D+A+
Sbjct: 61  SGVYILLVDERHADIKSVELHYEGGLIEFVKYIDQSKKALLNNPIYIASEKDGMSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLS WLEEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSVWLEEHPNEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|89143174|emb|CAJ57484.1| DNA gyrase subunit B [Microbacterium aurum]
          Length = 365

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 151/366 (41%), Positives = 220/366 (60%), Gaps = 20/366 (5%)

Query: 140 KREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRE 198
           +R+G ++  +F  G   + PL   G    +TGT +TF P + IF   DF+YDTL+ R ++
Sbjct: 1   RRQGYVWRQTFSGGGKPEGPLAR-GEETEETGTIITFWPDATIFESVDFDYDTLRTRFQQ 59

Query: 199 LSFLNSSVQISLIDKRS--------------PEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +FLN  ++I+L D R                        Y+ G+  +V YL++ +K  +
Sbjct: 60  TAFLNKGLRITLSDHRPASAYVVDGDDGQAVEMQPHDDFHYERGLVDYVEYLNKVRKAEV 119

Query: 245 QSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            +   I+        +IS++LAM+W   Y ENV  F N I   +GGTH  G R+ALT  I
Sbjct: 120 VNDEIIEVESEDTERHISLELAMQWTTSYTENVFTFANTINTHEGGTHEEGFRAALTTLI 179

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y   +   K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL ++E ++ V+  V
Sbjct: 180 NKYARANNLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQKIV 239

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L+ WL+ +P +AK I+ K +DA+  R AAR+AR+  RRK V + AS+P KL DC+ +
Sbjct: 240 GDQLTDWLDRNPQQAKRIITKAIDAATARLAARKARETARRKSVFESASMPDKLKDCTSK 299

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+FLVEGDSAGGSA +GR  E QAIL LRGK+LNVE+AR D+ L + EI  +I+A
Sbjct: 300 DPSISEIFLVEGDSAGGSAVRGRDPETQAILSLRGKVLNVEKARLDRALGNNEIQAIISA 359

Query: 481 LGTGIG 486
            G GIG
Sbjct: 360 FGCGIG 365


>gi|158905087|gb|ABW82366.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. alfalfae]
 gi|158905089|gb|ABW82367.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. alfalfae]
 gi|158905091|gb|ABW82368.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. allii]
 gi|158905093|gb|ABW82369.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. allii]
 gi|158905095|gb|ABW82370.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. allii]
 gi|158905097|gb|ABW82371.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. allii]
 gi|158905099|gb|ABW82372.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. axonopodis]
 gi|158905101|gb|ABW82373.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. axonopodis]
 gi|158905103|gb|ABW82374.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. begoniae]
 gi|158905105|gb|ABW82375.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. begoniae]
 gi|158905107|gb|ABW82376.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. begoniae]
 gi|158905109|gb|ABW82377.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. begoniae]
 gi|158905111|gb|ABW82378.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. begoniae]
 gi|158905113|gb|ABW82379.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. cassavae]
 gi|158905115|gb|ABW82380.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. cassiae]
 gi|158905117|gb|ABW82381.1| DNA gyrase subunit beta [Xanthomonas alfalfae subsp. citrumelonis]
 gi|158905119|gb|ABW82382.1| DNA gyrase subunit beta [Xanthomonas alfalfae subsp. citrumelonis]
 gi|158905121|gb|ABW82383.1| DNA gyrase subunit beta [Xanthomonas alfalfae subsp. citrumelonis]
 gi|158905123|gb|ABW82384.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. coracanae]
 gi|158905125|gb|ABW82385.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. cyamopsidis]
 gi|158905127|gb|ABW82386.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. desmodii]
 gi|158905129|gb|ABW82387.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv.
           desmodiigangetici]
 gi|158905131|gb|ABW82388.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv.
           desmodiirotundifolii]
 gi|158905133|gb|ABW82389.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. dieffenbachiae]
 gi|158905135|gb|ABW82390.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. dieffenbachiae]
 gi|158905137|gb|ABW82391.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. dieffenbachiae]
 gi|158905139|gb|ABW82392.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. dieffenbachiae]
 gi|158905141|gb|ABW82393.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. erythrinae]
 gi|158905143|gb|ABW82394.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. lespedezae]
 gi|158905145|gb|ABW82395.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. manihotis]
 gi|158905147|gb|ABW82396.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. patelii]
 gi|158905149|gb|ABW82397.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. phaseoli]
 gi|158905151|gb|ABW82398.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. phaseoli]
 gi|158905155|gb|ABW82400.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. poinsettiicola]
 gi|158905157|gb|ABW82401.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. ricini]
 gi|158905163|gb|ABW82404.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. syngonii]
 gi|158905165|gb|ABW82405.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. tamarindi]
 gi|158905175|gb|ABW82410.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905183|gb|ABW82414.1| DNA gyrase subunit beta [Xanthomonas perforans]
 gi|158905185|gb|ABW82415.1| DNA gyrase subunit beta [Xanthomonas citri pv. anacardii]
 gi|158905187|gb|ABW82416.1| DNA gyrase subunit beta [Xanthomonas citri pv. anacardii]
 gi|158905189|gb|ABW82417.1| DNA gyrase subunit beta [Xanthomonas citri pv. bauhiniae]
 gi|158905191|gb|ABW82418.1| DNA gyrase subunit beta [Xanthomonas citri pv. cajani]
 gi|158905193|gb|ABW82419.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|158905197|gb|ABW82421.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|158905199|gb|ABW82422.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|158905201|gb|ABW82423.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|158905203|gb|ABW82424.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|158905205|gb|ABW82425.1| DNA gyrase subunit beta [Xanthomonas citri pv. clitoriae]
 gi|158905207|gb|ABW82426.1| DNA gyrase subunit beta [Xanthomonas citri pv. desmodiilaxiflori]
 gi|158905209|gb|ABW82427.1| DNA gyrase subunit beta [Xanthomonas citri pv. glycines]
 gi|158905211|gb|ABW82428.1| DNA gyrase subunit beta [Xanthomonas citri pv. glycines]
 gi|158905213|gb|ABW82429.1| DNA gyrase subunit beta [Xanthomonas citri pv. malvacearum]
 gi|158905215|gb|ABW82430.1| DNA gyrase subunit beta [Xanthomonas citri pv. malvacearum]
 gi|158905217|gb|ABW82431.1| DNA gyrase subunit beta [Xanthomonas citri pv. mangiferaeindicae]
 gi|158905219|gb|ABW82432.1| DNA gyrase subunit beta [Xanthomonas citri pv. mangiferaeindicae]
 gi|158905221|gb|ABW82433.1| DNA gyrase subunit beta [Xanthomonas citri pv. mangiferaeindicae]
 gi|158905223|gb|ABW82434.1| DNA gyrase subunit beta [Xanthomonas citri pv. mangiferaeindicae]
 gi|158905225|gb|ABW82435.1| DNA gyrase subunit beta [Xanthomonas citri pv. mangiferaeindicae]
 gi|158905227|gb|ABW82436.1| DNA gyrase subunit beta [Xanthomonas citri pv. phaseoli var.
           fuscans]
 gi|158905229|gb|ABW82437.1| DNA gyrase subunit beta [Xanthomonas citri pv. phaseoli var.
           fuscans]
 gi|158905231|gb|ABW82438.1| DNA gyrase subunit beta [Xanthomonas citri pv. phaseoli var.
           fuscans]
 gi|158905233|gb|ABW82439.1| DNA gyrase subunit beta [Xanthomonas citri pv. rhynchosiae]
 gi|158905235|gb|ABW82440.1| DNA gyrase subunit beta [Xanthomonas citri pv. sesbaniae]
 gi|158905237|gb|ABW82441.1| DNA gyrase subunit beta [Xanthomonas citri pv. vignicola]
 gi|158905239|gb|ABW82442.1| DNA gyrase subunit beta [Xanthomonas citri pv. vignicola]
 gi|158905241|gb|ABW82443.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|158905243|gb|ABW82444.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|158905245|gb|ABW82445.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|158905247|gb|ABW82446.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|158905259|gb|ABW82452.1| DNA gyrase subunit beta [Xanthomonas perforans]
 gi|161898736|gb|ABW82420.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|168831114|gb|ACA34894.1| DNA gyrase beta [Xanthomonas citri]
 gi|168831116|gb|ACA34895.1| DNA gyrase beta [Xanthomonas alfalfae]
 gi|168831118|gb|ACA34896.1| DNA gyrase beta [Xanthomonas fuscans]
 gi|227825305|gb|ACP41351.1| DNA gyrase subunit beta [Xanthomonas citri pv. bilvae]
 gi|227825307|gb|ACP41352.1| DNA gyrase subunit beta [Xanthomonas citri pv. bilvae]
 gi|227825309|gb|ACP41353.1| DNA gyrase subunit beta [Xanthomonas citri pv. cajani]
 gi|227825311|gb|ACP41354.1| DNA gyrase subunit beta [Xanthomonas citri pv. cajani]
 gi|227825313|gb|ACP41355.1| DNA gyrase subunit beta [Xanthomonas citri pv. cajani]
 gi|227825315|gb|ACP41356.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825317|gb|ACP41357.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825319|gb|ACP41358.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825321|gb|ACP41359.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825323|gb|ACP41360.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825325|gb|ACP41361.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825327|gb|ACP41362.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825329|gb|ACP41363.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825331|gb|ACP41364.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825333|gb|ACP41365.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825335|gb|ACP41366.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825337|gb|ACP41367.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825339|gb|ACP41368.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825341|gb|ACP41369.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825343|gb|ACP41370.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825345|gb|ACP41371.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825347|gb|ACP41372.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825349|gb|ACP41373.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825351|gb|ACP41374.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825353|gb|ACP41375.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825355|gb|ACP41376.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825357|gb|ACP41377.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825359|gb|ACP41378.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825361|gb|ACP41379.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825363|gb|ACP41380.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825365|gb|ACP41381.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825367|gb|ACP41382.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825369|gb|ACP41383.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825371|gb|ACP41384.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825373|gb|ACP41385.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825375|gb|ACP41386.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825377|gb|ACP41387.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825379|gb|ACP41388.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825381|gb|ACP41389.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825383|gb|ACP41390.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825385|gb|ACP41391.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825387|gb|ACP41392.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825389|gb|ACP41393.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825391|gb|ACP41394.1| DNA gyrase subunit beta [Xanthomonas citri pv. malvacearum]
 gi|227825393|gb|ACP41395.1| DNA gyrase subunit beta [Xanthomonas citri pv. malvacearum]
 gi|227825395|gb|ACP41396.1| DNA gyrase subunit beta [Xanthomonas citri pv. malvacearum]
 gi|227825397|gb|ACP41397.1| DNA gyrase subunit beta [Xanthomonas citri pv. aurantifolii]
 gi|227825399|gb|ACP41398.1| DNA gyrase subunit beta [Xanthomonas citri pv. aurantifolii]
 gi|227825401|gb|ACP41399.1| DNA gyrase subunit beta [Xanthomonas citri pv. aurantifolii]
 gi|227825403|gb|ACP41400.1| DNA gyrase subunit beta [Xanthomonas citri pv. cajani]
 gi|294470744|gb|ADE80764.1| DNA gyrase subunit beta [Xanthomonas perforans]
 gi|294470746|gb|ADE80765.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|294470748|gb|ADE80766.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|294470750|gb|ADE80767.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|315439570|gb|ADU19857.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439572|gb|ADU19858.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439574|gb|ADU19859.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439576|gb|ADU19860.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439578|gb|ADU19861.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439580|gb|ADU19862.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439582|gb|ADU19863.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439584|gb|ADU19864.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439586|gb|ADU19865.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439588|gb|ADU19866.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439590|gb|ADU19867.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439592|gb|ADU19868.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439594|gb|ADU19869.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439596|gb|ADU19870.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439598|gb|ADU19871.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439600|gb|ADU19872.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439602|gb|ADU19873.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439604|gb|ADU19874.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439606|gb|ADU19875.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439608|gb|ADU19876.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439610|gb|ADU19877.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439612|gb|ADU19878.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439614|gb|ADU19879.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439618|gb|ADU19881.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439620|gb|ADU19882.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439622|gb|ADU19883.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439624|gb|ADU19884.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439626|gb|ADU19885.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439628|gb|ADU19886.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439630|gb|ADU19887.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439632|gb|ADU19888.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439634|gb|ADU19889.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439636|gb|ADU19890.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439638|gb|ADU19891.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439640|gb|ADU19892.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439642|gb|ADU19893.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439644|gb|ADU19894.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439646|gb|ADU19895.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439648|gb|ADU19896.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439650|gb|ADU19897.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439652|gb|ADU19898.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439654|gb|ADU19899.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439656|gb|ADU19900.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439658|gb|ADU19901.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439660|gb|ADU19902.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439662|gb|ADU19903.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439704|gb|ADU19924.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439706|gb|ADU19925.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439708|gb|ADU19926.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439710|gb|ADU19927.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439712|gb|ADU19928.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439714|gb|ADU19929.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439716|gb|ADU19930.1| DNA gyrase subunit B [Xanthomonas perforans]
          Length = 257

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 137/253 (54%), Positives = 176/253 (69%), Gaps = 2/253 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EA 59

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT + F PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y
Sbjct: 60  STKRGTTLRFKPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDG
Sbjct: 119 EGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKE
Sbjct: 179 GTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKE 238

Query: 346 KLVSSEVRSVVES 358
           KLVSS+VR  VE+
Sbjct: 239 KLVSSDVRPAVEN 251


>gi|285026269|dbj|BAI67863.1| DNA gyrase B [Rubritalea marina]
          Length = 360

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 161/360 (44%), Positives = 221/360 (61%), Gaps = 15/360 (4%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD-FNY 189
           S W K  + R+  +++++F  G     L V G A  + TGT+VTF P + IF     F +
Sbjct: 1   SDWFKAEVTRDSKVHQITFERGKTTQQLEVVGDAPSDKTGTKVTFFPDATIFVDTITFEF 60

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLREL+FLN  + I L D+R    ++ T +Y  GIE FV+ L   K  + + P+ 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDERPESEKKETFYYAKGIEEFVAQLSESKTTVHEEPVV 120

Query: 250 IQGSRD------------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + G R             ++  D+  ++ND Y +N+LC+ N+IP  DGG HL+G R ALT
Sbjct: 121 LNGKRQVEIDYDGKVMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGAHLTGFRGALT 180

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R I  Y + +   K    S+ GDD REG   V+S+KMP+PRFSSQTK+KLV++E+  VV 
Sbjct: 181 RSINQYAKVNKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEIEGVVS 240

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
           S V +GL  + +E+P  AK I+ K +  +     A R    T RK V+    LPGKLADC
Sbjct: 241 SIVYEGLQEYFDENPNLAKQIIDKAV-NAARAREAARKARETVRKSVMSGGGLPGKLADC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           SERDP KSE+++VEGDSAGGSAK GR+R NQAILPLRGK++NVE+AR  K L ++EI  +
Sbjct: 300 SERDPAKSEIYIVEGDSAGGSAKSGRNRINQAILPLRGKVINVEKARLHKALQNKEIQAM 359


>gi|190569887|dbj|BAG48901.1| DNA gyrase subunit B [Bartonella rattimassiliensis]
          Length = 325

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 205/325 (63%), Positives = 265/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+ +SF +G+ D PL V G    ++GTE+ FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHAISFTHGVADAPLKVVGDCDQESGTEIRFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L+D+R  + + + + Y+GG+  FV Y+D+ KK L+ +PI I   +D +S+D+A+
Sbjct: 61  SGVHILLVDERHADIQSVELHYEGGLTEFVKYIDQSKKALLDTPIYIANEKDGMSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR VVE+ VN+GLS WLEEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNEGLSIWLEEHPNEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP+KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPEKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|315439616|gb|ADU19880.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
          Length = 257

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 136/253 (53%), Positives = 175/253 (69%), Gaps = 2/253 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EA 59

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT + F PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y
Sbjct: 60  STKRGTTLRFKPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDG
Sbjct: 119 EGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR +++Y+E++  + + K ++ GDD REG  +VLS+K+PDP FSSQTKE
Sbjct: 179 GTHLAGFRAALTRVLSTYIEQNGIAXQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKE 238

Query: 346 KLVSSEVRSVVES 358
           KLVSS+VR  VE+
Sbjct: 239 KLVSSDVRPAVEN 251


>gi|66271260|gb|AAY43843.1| DNA gyrase subunit B [Vibrio sp. BRW 9804]
          Length = 283

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 144/283 (50%), Positives = 206/283 (72%), Gaps = 3/283 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++
Sbjct: 1   HGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAE 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K
Sbjct: 60  TFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNK 118

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR 
Sbjct: 119 TPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 178

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES 
Sbjct: 179 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 238

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           + + LS +L ++P EAK++  K++DA+   +AAR+AR++TRRK
Sbjct: 239 MGEKLSEFLIDNPTEAKMVCSKIIDAARAPEAARKAREMTRRK 281


>gi|188090370|gb|ACD49419.1| gyrase subunit B [Xanthomonas theicola]
 gi|188090374|gb|ACD49421.1| gyrase subunit B [Xanthomonas theicola]
          Length = 288

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL N ++     +    +  I+ + L   +      +  +      +D   + 
Sbjct: 61  DDNALNAYLANSAVEGAALIPASDEPPITSSALEKLLLLFASANDAVARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHG--SINNSDILVKRI 667
             +     +      E DQ  ++     + NR +    + +  +        + +L  R 
Sbjct: 121 ALIDLPPLDVAQLETEGDQHPSLEALQAVLNRGSLGTARYQLRFEPGTEHRPATLLAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL  +   S   +  R  +  +         ++      ++         +F
Sbjct: 181 HMGEELTQVLPMAVFESGELRPLREVALALHGLVRAGAQIVRGNKTQQVGSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+ +I +A  AD 
Sbjct: 241 DEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQGRIEEAVAADQ 288


>gi|4514443|dbj|BAA75420.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514445|dbj|BAA75421.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 163/306 (53%), Positives = 208/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L L I R G ++E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   FS   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WN+ Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTADTENGIGVEVALQWNESYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|158905257|gb|ABW82451.1| DNA gyrase subunit beta [Xanthomonas gardneri]
 gi|315439664|gb|ADU19904.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439666|gb|ADU19905.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439668|gb|ADU19906.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439670|gb|ADU19907.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439672|gb|ADU19908.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439674|gb|ADU19909.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439676|gb|ADU19910.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439678|gb|ADU19911.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439680|gb|ADU19912.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439682|gb|ADU19913.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439684|gb|ADU19914.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439686|gb|ADU19915.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439688|gb|ADU19916.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439690|gb|ADU19917.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439692|gb|ADU19918.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439694|gb|ADU19919.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439696|gb|ADU19920.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439698|gb|ADU19921.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439700|gb|ADU19922.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439702|gb|ADU19923.1| DNA gyrase subunit B [Xanthomonas gardneri]
          Length = 257

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 136/253 (53%), Positives = 176/253 (69%), Gaps = 2/253 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EA 59

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT + F P+  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y
Sbjct: 60  STKRGTTLRFKPAVAIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDG
Sbjct: 119 EGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKE
Sbjct: 179 GTHLAGFRAALTRVLSNYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKE 238

Query: 346 KLVSSEVRSVVES 358
           KLVSS+VR  VE+
Sbjct: 239 KLVSSDVRPAVEN 251


>gi|159576549|dbj|BAF92823.1| DNA gyrase subunit B [Virgibacillus halophilus]
          Length = 328

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 146/332 (43%), Positives = 201/332 (60%), Gaps = 9/332 (2%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTE 172
           YKVSGGLHGVG SVVNALS W+++   REG  Y   F   G    P V  G     TGT 
Sbjct: 1   YKVSGGLHGVGASVVNALSEWMEITSFREGQKYFQRFEKGGKPAGPPVNQG-TSRKTGTM 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F P   IFS   F+ + +  RLRE +FL   ++I+L D RS +       Y  G++AF
Sbjct: 60  VHFKPDPAIFSTTTFDEEIIAERLREAAFLLKGLRITLHDMRSEDRM--EFCYPEGLKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+  K+ L    +  +G  + I +D A ++NDG+ E++L F N++  KDGGTH SG 
Sbjct: 118 VDYLNEDKETLH-DVVFFEGEHEQIEVDFAFQFNDGFAESMLSFVNHVRTKDGGTHESGA 176

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSS 350
           RSA TR    Y  K+   K+ ++++ G D REG T+++S+++P+   +F  QTK KL +S
Sbjct: 177 RSATTRVFNDYARKNGLIKEKEKNLEGTDIREGLTAIVSVRIPEEKLQFEGQTKAKLGTS 236

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIA 408
           E RS V+S V++ L+ +LEE+P  A  +VKK L A   R+AAR+ARD     +K      
Sbjct: 237 EARSAVDSIVSEKLTYFLEENPDVATSLVKKALKAKEAREAARKARDESRNGKKKRRKDT 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
            L GKL     R+PK++EL+LVEGDSAGGSAK
Sbjct: 297 LLSGKLTPAQSRNPKRNELYLVEGDSAGGSAK 328


>gi|190569861|dbj|BAG48888.1| DNA gyrase subunit B [Bartonella birtlesii]
          Length = 325

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 208/325 (64%), Positives = 266/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF +GI D+PL + G    ++GTEV+FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTHGIADSPLKIVGDCDRESGTEVSFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S + I L+D+R  + R + + Y+GG+  FV Y+D+ KK L+ +PI I   +D IS+D+A+
Sbjct: 61  SGIHILLVDERHADIRSVELHYEGGLIEFVKYIDQTKKALLDTPIYITSEKDGISVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR VVE+ VN+GLS WLEEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNEGLSTWLEEHPNEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILN ERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNEERARFDRM 325


>gi|60116925|gb|AAX14394.1| DNA gyrase B subunit [Serratia plymuthica]
          Length = 303

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 222/306 (72%), Gaps = 4/306 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I+REG ++E ++  G    PL V G   + TGT V F PS +
Sbjct: 1   HGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFWPSYE 59

Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            F +  +F YD L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL+++
Sbjct: 60  TFTNNVEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYEGGIKAFVEYLNKN 117

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR 
Sbjct: 118 KTPIHPNVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRT 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ 
Sbjct: 178 LNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETL 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC E
Sbjct: 238 MNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 297

Query: 420 RDPKKS 425
           RDP  S
Sbjct: 298 RDPALS 303


>gi|164456709|dbj|BAF97847.1| gyrase B subunit [Vibrio ordalii]
          Length = 293

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 152/295 (51%), Positives = 215/295 (72%), Gaps = 3/295 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G   + TGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ F+  +F+YD L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV +
Sbjct: 60  WPSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFRYEGGIKAFVGH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+R+K P+ +        RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G R 
Sbjct: 119 LNRNKTPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 179 ALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKT 238

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            VES + + L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 239 AVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAG 293


>gi|210062238|gb|ACJ06168.1| GyrB [Aeromonas caviae]
          Length = 310

 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 173/313 (55%), Positives = 226/313 (72%), Gaps = 3/313 (0%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYE 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+       
Sbjct: 60  ILAKRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
              +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   S
Sbjct: 118 TTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYS 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E
Sbjct: 178 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 297

Query: 431 EGDSAGGSAKQGR 443
           EGDSAGGSAKQGR
Sbjct: 298 EGDSAGGSAKQGR 310


>gi|190148840|gb|ACE63395.1| DNA gyrase B subunit [Pseudonocardia benzenivorans]
          Length = 346

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 142/348 (40%), Positives = 207/348 (59%), Gaps = 17/348 (4%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           SS L + I  +G  +   +   +   PL V G+    TGT VTF    DIF    +N +T
Sbjct: 1   SSRLDVDIDTDGFHWSQKYTRSVP-GPL-VKGAPTRATGTTVTFWADPDIFETTTYNVET 58

Query: 192 LQHRLRELSFLNSSVQISLIDKRSP---------------EPREITMFYKGGIEAFVSYL 236
           ++ RL+E++FLN  + I L D+R+                + +E T  Y  G+E FV++L
Sbjct: 59  VRRRLQEMAFLNKGLTIVLRDERNGDNGEAEEPDAEGYVAKIKEYTFHYPNGLEDFVAHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           ++ K P+ +  +   G     ++++AM+WN GY E+V  F N I   +GGTH  G R+AL
Sbjct: 119 NKTKDPIHKKLVSFSGEAPGHALEVAMQWNSGYTESVYTFANTINTHEGGTHEEGFRAAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T  +  Y       K+   ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V
Sbjct: 179 TSTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFV 238

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +   N+ L+ W E +P EA+ IV K + ++  R AA +AR+L RRK   DI  LPGKLAD
Sbjct: 239 QRVSNEWLADWFERNPTEARTIVNKAVQSAQARMAAPKARELVRRKSAGDIGGLPGKLAD 298

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           C   DP +SE+++VEGDSAGGSAK GR    QAILP+RGKI+NVE+AR
Sbjct: 299 CRSTDPSRSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKIINVEKAR 346


>gi|164456769|dbj|BAF97877.1| gyrase B subunit [Vibrio ruber]
          Length = 268

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 138/269 (51%), Positives = 192/269 (71%), Gaps = 4/269 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVG+SVVNALS  + L I R G+I+  ++ +G+   PL V G     +GT 
Sbjct: 1   SYKVSGGLHGVGISVVNALSEKVVLTIHRSGHIHTQTYHHGVPQAPLAVVGDTE-KSGTM 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F PSS+ F+  +F+Y+ L  RLRELSFLNS V I L D+R  +       Y+GGI AF
Sbjct: 60  VRFWPSSETFTNIEFHYEILAKRLRELSFLNSGVSIKLNDERDSK--HDHFMYEGGIRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           VS+L+R+K P+          R++ I++++AM+WND + E++ CFTNNIPQ+DGGTH++G
Sbjct: 118 VSHLNRNKTPIHDRVFHFNQEREDGITVEVAMQWNDSFQESIFCFTNNIPQRDGGTHMAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + S+++K   SKK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 178 FRAALTRTLNSFMDKEGFSKKEKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           V+S VE+ + + LS +L E+P EAKI+  
Sbjct: 238 VKSAVETAMGEKLSEFLIENPNEAKIVCS 266


>gi|212645845|ref|NP_498849.3| hypothetical protein R05D3.1 [Caenorhabditis elegans]
 gi|218512148|sp|P34534|TOP2M_CAEEL RecName: Full=Putative DNA topoisomerase 2, mitochondrial;
           Short=DNA topoisomerase II; Flags: Precursor
          Length = 1054

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 114/602 (18%), Positives = 213/602 (35%), Gaps = 42/602 (6%)

Query: 74  CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS 133
            +V +NG G+P ++H  EGI    ++   L     ++    K  GG +G G  + N  S 
Sbjct: 15  ISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSK 74

Query: 134 WLKLRIK--REGNIYEMSFINGILD---NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
              +     R    +   + + +       +V          T+V F+P  + F +   +
Sbjct: 75  EFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLERFQIDKLS 134

Query: 189 YDTLQ---HRLRELSFLNSSV-QISLIDKRSPEPREITMFYKGGIEAFV--SYLDRHKKP 242
            D +     R+ E++        + L  ++                + +   +       
Sbjct: 135 DDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVDGFEDYVKMFNDSSSLLFLHPTPRWHV 194

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +       G    +               ++ F NNI  + GG+H+  +   +   I  
Sbjct: 195 GVAKRNNFFGESHVV------------LPKIVSFVNNINTEKGGSHVDYVMDKIVNIIKP 242

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS-EVRSVVESFVN 361
            V+         +SV     +   +  ++  + +P F SQTKE L +  +    +     
Sbjct: 243 IVDSK--LGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAKNFGSIFECDA 300

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
              + W E+  L   I+ + +          R +    R    L+ A   G         
Sbjct: 301 KKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKRVSVSSVRDIVKLEDAEWAG-----ITGT 355

Query: 422 PKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
            +K  L L EGDSA   A  G     RE   + PL+GK+LNV      +   ++EI  L+
Sbjct: 356 AEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKNEEISNLL 415

Query: 479 TALGTGIGQDSF-DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYI 536
             LG      +      LRY +++I+ D D DG+HI+ L++ F  +  PSL+H +GF+  
Sbjct: 416 RILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQS 475

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            + PL    +G  ++          +   +   +    +    G  + N+ R +  D   
Sbjct: 476 FRTPLLKAKKGDKVRSFFSMNEYRKWADVEEGGKWKIKYYKGLGTSTSNEAREYFSDLDH 535

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
                K           +   I   F+ +   E    +        N    K+E S+   
Sbjct: 536 HTVNFK------YTGTTDDDAIRMAFDRDKSDERKEWIRRSENEITNEDDGKTEISYQEF 589

Query: 657 IN 658
           ++
Sbjct: 590 VD 591


>gi|188090326|gb|ACD49397.1| gyrase subunit B [Xanthomonas cucurbitae]
          Length = 283

 Score =  246 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 138/283 (48%), Gaps = 7/283 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      +  I      +D   + 
Sbjct: 61  DDAALNAYLASSAVEGAALIPAADEPPITGEALEKLLLLFAGANDAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D    +     + NR      + +  +  +  +  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPALEALQAVLNRGTLGTARYQLRFDPATEHTAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   V+   +  S   +  R  +  +         ++       IT        + 
Sbjct: 181 HMGEEFTQVVPMGAFESGELRPLREVALALNGLVREGAQIVRGNKSHPITSFGQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDA 283


>gi|323364333|gb|ADX42736.1| DNA gyrase subunit B [Bhargavaea cecembensis]
          Length = 337

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 166/338 (49%), Positives = 238/338 (70%), Gaps = 2/338 (0%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSS 205
            ++F  G +   L V G    +TG+EV F    +IF+    + YD L HRL+EL++LN  
Sbjct: 1   FIAFERGQISEELRVIGDTE-ETGSEVRFKADPEIFTETTVYEYDILAHRLQELAYLNRG 59

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           ++I+L D+R  E R  +  Y+GGI+++V +++  K+P+ + PI I+G +D IS+++AM++
Sbjct: 60  IRITLSDERGEEERSDSYHYEGGIKSYVQHINEDKEPIHEEPIFIEGEKDGISVEIAMQY 119

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           N GY  N+  F NNI   +GGTH SG ++ALTR I  Y  KS   K ++ ++ G+D REG
Sbjct: 120 NAGYASNIFSFANNINTYEGGTHESGFKTALTRVINDYARKSGLLKDNESNLSGEDAREG 179

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K PDP+F  QTK KL +SEV  +V S  ++GL  +L E+P  A++IV+K L A
Sbjct: 180 LTAIVSVKHPDPQFEGQTKTKLGNSEVSQIVNSLFSEGLERFLMENPTGARMIVEKGLMA 239

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R AA++AR+LTRRK VL+I++LPGKL+DCS RDP  SEL++VEGDSAGGSAK GR R
Sbjct: 240 ARARVAAKKARELTRRKSVLEISNLPGKLSDCSSRDPAISELYIVEGDSAGGSAKNGRDR 299

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
             QAILPLRGKILNVE+A  +++LS+ EI  +ITALGT
Sbjct: 300 HFQAILPLRGKILNVEKANINRILSNTEIRAMITALGT 337


>gi|110225000|dbj|BAE97489.1| DNA gyrase subunit B [Streptococcus peroris]
          Length = 300

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 129/300 (43%), Positives = 191/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLKVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI
Sbjct: 60  TIVHFTPDPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH 
Sbjct: 120 ASYVKYINENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDAFSDFLLENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISN 299


>gi|158905249|gb|ABW82447.1| DNA gyrase subunit beta [Xanthomonas fragariae]
 gi|158905251|gb|ABW82448.1| DNA gyrase subunit beta [Xanthomonas fragariae]
 gi|158905253|gb|ABW82449.1| DNA gyrase subunit beta [Xanthomonas fragariae]
 gi|158905255|gb|ABW82450.1| DNA gyrase subunit beta [Xanthomonas fragariae]
          Length = 257

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 135/253 (53%), Positives = 176/253 (69%), Gaps = 2/253 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EA 59

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT + F P+  IFS  +F+Y+ L  RLRELSFLNS V+I+LID+R  E R     Y
Sbjct: 60  STKRGTTLRFKPAVAIFSDVEFHYEILARRLRELSFLNSGVKIALIDER-GEGRRDDFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDG
Sbjct: 119 EGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKE
Sbjct: 179 GTHLAGFRAALTRVLSNYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKE 238

Query: 346 KLVSSEVRSVVES 358
           KLVSS+VR  VE+
Sbjct: 239 KLVSSDVRPAVEN 251


>gi|299780361|gb|ADJ39723.1| DNA topoisomerase II large subunit [Enterobacteria phage T4T]
          Length = 516

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 130/507 (25%), Positives = 209/507 (41%), Gaps = 63/507 (12%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------GLHHMIYEVLDNAIDESLE 58
           I+IL  ++ +KKR  MYIG +  E+                GL  +I E++DN++DE + 
Sbjct: 6   IKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEGIR 65

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE---EGISAAEVIMTRLHAGGKFNQK 112
               +A+ I VT+  +   TV DNGRGIP  + K    E I       T   AGG F   
Sbjct: 66  TKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDD 124

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
             +V+GG++GVG S+ N  S           N   +   NG+ +         G   GT 
Sbjct: 125 KERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWEDI--PGKWKGTR 182

Query: 173 VTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           VTF+P    F          D    RL+ L+ +   +Q +   K+     +         
Sbjct: 183 VTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKVQGNFKKY------- 235

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                               I   ++N SI +  R  DG+ +  L + NNI  K+GG H+
Sbjct: 236 ------------ARQYDEHAIVQEQENCSIAVG-RSPDGFRQ--LTYVNNIHTKNGGHHI 280

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
                 +   +   +++       K  V     +E  T V+ ++ M + RF SQTKE+L 
Sbjct: 281 DCAMDDICEDLIPQIKRK-----FKIDVTKARVKECLTIVMFVRDMKNMRFDSQTKERLT 335

Query: 349 SS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           S   E+RS ++       +  +    L  + I+  +++A++ R  A      T+      
Sbjct: 336 SPFGEIRSHIQ-----LDAKKISRAILNNEAILMPIIEAALARKLAAEKAAETKAAKKAS 390

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            A +   +          + LFL EGDSA G     R +E     PLRGK+LN     + 
Sbjct: 391 KAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYA 450

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDIN 493
            ML ++E+  +    G  +G+ +F+  
Sbjct: 451 DMLKNKELFDICAITGLVLGEKAFEEK 477


>gi|158905261|gb|ABW82453.1| DNA gyrase subunit beta [Xanthomonas vesicatoria]
 gi|158905263|gb|ABW82454.1| DNA gyrase subunit beta [Xanthomonas vesicatoria]
 gi|158905265|gb|ABW82455.1| DNA gyrase subunit beta [Xanthomonas vesicatoria]
 gi|158905267|gb|ABW82456.1| DNA gyrase subunit beta [Xanthomonas vesicatoria]
 gi|158905269|gb|ABW82457.1| DNA gyrase subunit beta [Xanthomonas vesicatoria]
 gi|315439718|gb|ADU19931.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439720|gb|ADU19932.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439722|gb|ADU19933.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439724|gb|ADU19934.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439726|gb|ADU19935.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439728|gb|ADU19936.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439730|gb|ADU19937.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439732|gb|ADU19938.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
          Length = 257

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 137/253 (54%), Positives = 176/253 (69%), Gaps = 2/253 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EA 59

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT + F P+  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y
Sbjct: 60  STKRGTTLRFKPAVAIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDG
Sbjct: 119 EGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR ++SY+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKE
Sbjct: 179 GTHLAGFRAALTRVLSSYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKE 238

Query: 346 KLVSSEVRSVVES 358
           KLVSS+VR  VE+
Sbjct: 239 KLVSSDVRPAVEN 251


>gi|190569871|dbj|BAG48893.1| DNA gyrase subunit B [Bartonella doshiae]
          Length = 325

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 206/325 (63%), Positives = 262/325 (80%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF +G+ D PL + G    ++GTE+ FLPSS+ F++  F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTHGVADCPLKIVGDCDAESGTEIRFLPSSETFTMVKFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L+D+R  + R I + Y+GG+  FV Y+D+ KK L+  PI I   +D +S+++A+
Sbjct: 61  SGVHILLVDQRHADIRSIKLHYEGGLIEFVKYIDQSKKALLDDPIYITNEKDGMSVEVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLS WLEEHP EAKI+  KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSVWLEEHPNEAKILTSKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKL+DC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAAAAREAARKARELTRRKGALDITSLPGKLSDCQERDPVKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|188090306|gb|ACD49387.1| gyrase subunit B [Xanthomonas cucurbitae]
          Length = 288

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      +  I      +D   + 
Sbjct: 61  DDAALNAYLASSAVEGAALIPAADEPPITGEALEKLLLLFAGANDAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D    +     + NR      + +  +  +  +  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPALEALQAVLNRGTLGTARYQLRFDPATEHTAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   V+   +  S   +  R  +  +         ++       IT        + 
Sbjct: 181 HMGEEFTQVVPMGAFESGELRPLREVALALNGLVREGAQIVRGNKSHPITSFGQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+ +I +A  AD 
Sbjct: 241 DEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQGRIEEAVAADQ 288


>gi|145221099|ref|YP_001131777.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium gilvum PYR-GCK]
 gi|315441936|ref|YP_004074815.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Mycobacterium sp. Spyr1]
 gi|145213585|gb|ABP42989.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium gilvum PYR-GCK]
 gi|315260239|gb|ADT96980.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Mycobacterium sp. Spyr1]
          Length = 677

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 146/687 (21%), Positives = 263/687 (38%), Gaps = 60/687 (8%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYA-DIITV 66
           SY A  I  L  +   + RP++ +G     + L     E++DNA++E +   +   ++T+
Sbjct: 2   SYTAADITELDDVQHTRLRPAVNLGLDVLNTALR----ELIDNAVEEVADPDHGGSVVTI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS--GGLHGVG 124
           TL+ DGS +V+D+GRG+P D     G +     +    AGGKF+  +   S   GL+G+G
Sbjct: 58  TLHADGSVSVADDGRGLPVDTDPTTGKNGIVKTLGTARAGGKFSAHTDATSTGAGLNGIG 117

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------DNPLVVTGS-A 165
            +    +S+   + ++R G  Y  SF  G                       L   G+  
Sbjct: 118 AAAAVFISARTDVTVRRGGKTYLQSFGRGYPGVFEGKEFDPGAPFTRSDTQKLRGVGNRK 177

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----- 220
            +  GT V  L    +      +   +  R    + ++  VQ+ ++D+  P         
Sbjct: 178 PDAHGTTVRILFDPAVVPDSAVDIGEVLLRAHAAARMSPGVQLFVVDEGWPGEEIPPALL 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRI---QGS----RDNISIDLAMRWNDGYHENV 273
                  G +  +  +             +   +G     R       ++         V
Sbjct: 238 EPFKGPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPATV 297

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK--RSVIGDDCREGFTSVLS 331
             F N +    GG+HL+     L+  +     +       K        D        + 
Sbjct: 298 AAFCNTVRTPGGGSHLTAAVKGLSEALADRASRIRDLGLAKGEEGPEPQDFAAVTALAVD 357

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL------EAKIIVKKVLDA 385
            + PD  + SQ K  + S  +   +   V   ++ W              K+ ++     
Sbjct: 358 TRAPDVAWDSQAKTAVSSRSLNIAMAPDVARSVTVWAANPANSDTVSLWTKLALESARAR 417

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSER-DPKKSELFLVEGDSAGGSAKQGRS 444
                A  R+R  ++ KG+    SLP KL    E      +ELFL EGDSA G+ K  R 
Sbjct: 418 RSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAARD 477

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
              QA  PL+GK  NV      K  +  E  ++   LG G+ +D+ D    RY +I+  +
Sbjct: 478 ATFQAAFPLKGKPPNVYGFALSKARAKDEFDSIERILGCGV-RDNCDPELCRYDRILFAS 536

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DAD DG +I + L++ F      L+  G +Y+  PPL+ +  G    Y +DE   +  + 
Sbjct: 537 DADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKAGDERIYCQDESERDAAVA 596

Query: 565 NQSLSEEIE---LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
               + + +         G +  +D  N + D  +  + +   +P+  +  +   +  G 
Sbjct: 597 RLKETSKRKVEVQRNKGLGEMDADDFWNTVLDPQR--RTVIRLHPDDAEKKLHHTLFGG- 653

Query: 622 FNCESDQEINVSLASKLANRLNFIAEK 648
                  E   +  +++A R++  +  
Sbjct: 654 -----PPEGRRTWMAEIAARVDTASLD 675



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITGPCS---LLDTIFSIGRK 732
           +  S I  F   Y+ +    +    L  L ++    ++I           +  +    ++
Sbjct: 545 INSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKAGDERIYCQDESERDAAVARLKETSKR 604

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
            + +QR KGLGEM+A   W T L+P  R+++R+   DA +   L   L G   E RR ++
Sbjct: 605 KVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRLHPDDAEK--KLHHTLFGGPPEGRRTWM 662

Query: 793 QENSLPSA---LD 802
            E +       LD
Sbjct: 663 AEIAARVDTASLD 675


>gi|190569859|dbj|BAG48887.1| DNA gyrase subunit B [Bartonella alsatica]
          Length = 325

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 204/325 (62%), Positives = 265/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF +G+ D PL + G    ++GTE+ FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFSHGVADFPLKIIGDCDAESGTEIRFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S + I LID+R  + + + + Y+GG+  FV Y+D+ K+ L+ +PI I   +D +S+D+A+
Sbjct: 61  SGIHILLIDERHADVQTVELHYEGGLIEFVKYIDQTKRALLDTPIYITSEKDGMSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR VVE+ VN+GLS W+EEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNEGLSIWMEEHPNEAKLLISKVI 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|164456745|dbj|BAF97865.1| gyrase B subunit [Salinivibrio costicola subsp. costicola]
          Length = 281

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 144/269 (53%), Positives = 191/269 (71%), Gaps = 3/269 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L+L I R G  ++++F +G    PLV  G   + TGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLELTIWRNGYAHQLNFSHGEPLGPLVQLGET-DQTGTR 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS + F+   FNY+ L  RLRELSFLNS V I LID+R  E +     Y+GGI AF
Sbjct: 60  IRFWPSEETFTDIHFNYEILAKRLRELSFLNSGVSIRLIDER-EEDKSDHFKYEGGIRAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L++ K  +  S    +  RD+ +S++++M+WNDGY EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VEHLNKKKTAIHPSVFHFEHMRDDGVSVEVSMQWNDGYQENIYCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           V+S VES ++  LS +L EHP +AK++  
Sbjct: 239 VKSAVESAMSSHLSDFLIEHPADAKVVCS 267


>gi|190569863|dbj|BAG48889.1| DNA gyrase subunit B [Bartonella bovis]
          Length = 325

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 204/325 (62%), Positives = 263/325 (80%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+ MSF  G+ D+PL + G    ++GTE++FLP+ +IF+  +F+++TL+ RLREL+FLN
Sbjct: 1   KIHAMSFTRGVADSPLKIVGDCDVESGTEISFLPNPEIFTKVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L D+R  + + + + Y+GG+  FV Y+DR KK L+  PI I   +D +++D+A+
Sbjct: 61  SGVHILLTDQRHADVQSVELHYEGGLVEFVKYIDRSKKVLIDDPIYITSEKDGMNVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE  LCFTNNIPQ+DGGTHL+G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKDLCFTNNIPQRDGGTHLAGFRSALTRQINGYAELSGITKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEEHP EAKI++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKILISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|190569897|dbj|BAG48906.1| DNA gyrase subunit B [Bartonella vinsonii subsp. berkhoffii]
          Length = 325

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 204/325 (62%), Positives = 263/325 (80%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF +G+ D+PL + G    ++GTE+ FLPS   F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTHGVADSPLSIIGDCDTESGTEIRFLPSPQTFTMIEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S + I L+D+R  + R + + Y+GG+  FV Y+D  KK L+ +PI I   +D +S+++A+
Sbjct: 61  SGIHILLVDERHADIRSVKLHYEGGLIEFVKYIDPTKKALLDNPIYIANEKDGMSVNVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE V+ FTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K S+ GDDCR
Sbjct: 121 WWNDSYHEKVVWFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVSLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR VVE+ VN+GLSAWLEEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNEGLSAWLEEHPNEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|164456731|dbj|BAF97858.1| gyrase B subunit [Vibrio splendidus]
          Length = 273

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 146/273 (53%), Positives = 196/273 (71%), Gaps = 3/273 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ 
Sbjct: 3   QVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTGTEIR 61

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI+AFV 
Sbjct: 62  FWPSEETFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGIQAFVE 120

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+G R
Sbjct: 121 HLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFR 180

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + S+++K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 181 GALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVK 240

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           S VES + + LS +L E+P EAKI+  K++DA+
Sbjct: 241 SAVESTMGEKLSEFLIENPGEAKIVCSKIIDAA 273


>gi|158905159|gb|ABW82402.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. spondiae]
 gi|158905161|gb|ABW82403.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. spondiae]
          Length = 257

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 137/253 (54%), Positives = 176/253 (69%), Gaps = 2/253 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EA 59

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT + F PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y
Sbjct: 60  STKRGTTLRFKPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDG
Sbjct: 119 EGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIMMDVALQWTDAYQETMYCFTNNIPQKDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKE
Sbjct: 179 GTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKE 238

Query: 346 KLVSSEVRSVVES 358
           KLVSS+VR  VE+
Sbjct: 239 KLVSSDVRPAVEN 251


>gi|190569875|dbj|BAG48895.1| DNA gyrase subunit B [Bartonella japonica]
          Length = 325

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 206/325 (63%), Positives = 265/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+E SF +G+ D PL V G    ++GTE+ FLPS + F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHETSFTHGVADFPLKVVGDCDTESGTEIRFLPSPETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S + I L+D+R  + + + + Y+GG+  FV Y+D+ KK L+ SPI I   +DN+S+D+A+
Sbjct: 61  SGIHILLVDERHADVQSVKLHYEGGLVEFVKYIDQTKKALLDSPIYITSEKDNMSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|190569881|dbj|BAG48898.1| DNA gyrase subunit B [Bartonella koehlerae]
          Length = 325

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 207/325 (63%), Positives = 264/325 (81%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            IYEMSF +G+ + PL + G    ++GTE+ FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIYEMSFTHGVANAPLKIVGDCDAESGTEIRFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L+D+R  + + + + Y+GG+  FV Y+D+ KK L+  PI I   +D +S+D+A+
Sbjct: 61  SGVHILLVDQRHADIKSVELHYEGGLTEFVKYIDQSKKALLDYPIYIASEKDGMSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEEHP EAKI+  KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKIVTSKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|11078833|dbj|BAB17421.1| DNA gyrase subunit B [Pseudomonas putida]
 gi|11078895|dbj|BAB17452.1| DNA gyrase subunit B [Pseudomonas putida]
          Length = 297

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 155/300 (51%), Positives = 217/300 (72%), Gaps = 4/300 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+          R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+L
Sbjct: 118 TNKTPVNSQVFHFSVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N   S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297


>gi|110224994|dbj|BAE97486.1| DNA gyrase subunit B [Streptococcus oralis]
          Length = 300

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 190/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F+++ L  R++EL+FLN  ++IS+ DKR    +     Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETTTFDFEKLNKRIQELAFLNRGLRISITDKREGLEQTKHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH 
Sbjct: 120 ASYVEYINENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISN 299


>gi|4514455|dbj|BAA75426.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 160/306 (52%), Positives = 206/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I R G  +E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLIIHRAGQTHEQEYCHGDSQYPLKVIGET-DKSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS   FS   F+ + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TVIRFWPSELTFSQTIFSVEILARRLRELSFLNAGVRIVLRDERV--NFEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       +   I++++A++WN+ Y ENV CFTNNIPQKDGGTHL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTTDTDSGIAVEVALQWNESYQENVRCFTNNIPQKDGGTHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLESENILKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|158905167|gb|ABW82406.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905169|gb|ABW82407.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905171|gb|ABW82408.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905173|gb|ABW82409.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905177|gb|ABW82411.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905179|gb|ABW82412.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905181|gb|ABW82413.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
          Length = 257

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 137/253 (54%), Positives = 176/253 (69%), Gaps = 2/253 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EA 59

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GT + F PS  IFS  +F+YD L  RLRELSFLNS V+I+LID+R  E R     Y
Sbjct: 60  STKRGTTLRFKPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDG
Sbjct: 119 EGGIRSFVEHLAQLKSPLHANVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+G R+ALTR +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKE
Sbjct: 179 GTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKE 238

Query: 346 KLVSSEVRSVVES 358
           KLVSS+VR  VE+
Sbjct: 239 KLVSSDVRPAVEN 251


>gi|307343786|emb|CBJ19498.1| gyrase B subunit [Micromonospora saelicesensis]
          Length = 363

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 161/366 (43%), Positives = 236/366 (64%), Gaps = 9/366 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + N      L   G A + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGSVWRQHYTNSKPSA-LEK-GEATDSTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFE 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FD
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFD 357

Query: 492 INKLRY 497
           + KLRY
Sbjct: 358 MEKLRY 363


>gi|110224984|dbj|BAE97481.1| DNA gyrase subunit B [Streptococcus infantis]
          Length = 300

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 128/300 (42%), Positives = 191/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLEVIGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI
Sbjct: 60  TIVHFTPDPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  +  +PI   G  ++I++++AM++  GYHENV+ F NNI   +GGTH 
Sbjct: 120 ASYVEYINENKDVIFDTPIYTDGEMEDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDAFSDFLLENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISN 299


>gi|62084074|dbj|BAD91444.1| DNA gyrase subunit B [Streptococcus canis]
 gi|110224954|dbj|BAE97466.1| DNA gyrase subunit B [Streptococcus canis]
          Length = 300

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 186/300 (62%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   F  G +   L V     + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLAVI-GTTDTTG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF    +F+Y  L  R++EL+FLN  ++IS+ DKR    +E    Y+GGI
Sbjct: 60  TTVHFTPDPEIFAETTEFDYKVLAKRIQELAFLNRGLKISITDKRLGMKQEEHFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+  K  +  +PI   G  D +++++AM++   YHE V+ F NNI   +GGTH 
Sbjct: 120 GSYVEFLNDKKDVIFNTPIYTDGELDGVAVEVAMQYTTSYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++    +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|327335376|gb|AEA49883.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 291

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/291 (40%), Positives = 190/291 (65%), Gaps = 2/291 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG SVVNALS+ L + + R+G ++   F  G+    L V G     TGT   F P  
Sbjct: 1   LHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGDTE-VTGTTTHFKPDP 59

Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           +IF+    ++YDTL  R+REL+FL   V+I++ DKR  + R+    Y+GGI+++V +L+R
Sbjct: 60  EIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNDYCYEGGIKSYVEHLNR 119

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            ++ + + P+ I+GS+D I++++A+++ND Y  N+  F NNI   +GGTH +G ++ LTR
Sbjct: 120 SREVVHEEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTR 179

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            I  Y  ++   K+   ++ G+D REG T+++SIK PDP+F  QTK KL +SE R++ ++
Sbjct: 180 VINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDA 239

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
             ++ L  +L E+P  AK IV+K + A+  R AA++AR+LTRRK  L++++
Sbjct: 240 LFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSN 290


>gi|41349629|emb|CAD60655.1| DNA gyrase B subunit [Pseudomonas stutzeri CLN100]
          Length = 298

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 157/300 (52%), Positives = 217/300 (72%), Gaps = 3/300 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  L L I+REG ++E ++ +G+   PL   G    D+GTE+ 
Sbjct: 1   QVSGGLHGVGVSVVNALSEELLLTIRREGRVWEQTYRHGVPQAPLAAVGETE-DSGTEIH 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+
Sbjct: 60  FKPSAETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERNAKE--ELFKYEGGLSAFVA 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RS
Sbjct: 118 YLNTNKTPVNEVFHFNIQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRS 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++
Sbjct: 178 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            VE  +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 AVEQEMGKHFADFLLEHPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 297


>gi|89143194|emb|CAJ57494.1| DNA gyrase subunit B [Microbacterium lacticum]
          Length = 370

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 154/370 (41%), Positives = 223/370 (60%), Gaps = 20/370 (5%)

Query: 139 IKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
           I+R+G ++  SF  G     PL   G    +TGT +TF P ++IF   DF+YDTL+ R +
Sbjct: 1   IRRQGFVWRQSFAGGGKPQAPLAQ-GEETVETGTVITFWPDAEIFETVDFDYDTLRTRFQ 59

Query: 198 ELSFLNSSVQISLID--------------KRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + +FLN  ++I+L D              +           Y+ G+  +V YL++ +K  
Sbjct: 60  QTAFLNKGLRITLSDLRPSSAYVVDTEDGQSVERQPHDEFHYERGLVDYVEYLNKIRKAD 119

Query: 244 --MQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
                 I ++      +IS++LAM+W   Y ENV  F N I   +GGTH  G R+A+T  
Sbjct: 120 VVNDEIIEVEAEDTVRHISLELAMQWTTSYTENVFTFANTINTHEGGTHEEGFRAAMTTY 179

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y  +    K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E ++ V+  
Sbjct: 180 INKYAREKGLLKEKDDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQKV 239

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D L+ WL+ +P++AK ++ K +DA+  R AAR+AR+  RRK V + AS+P KL DC+ 
Sbjct: 240 VGDQLTDWLDRNPVQAKRVIMKAVDAATARLAARKARETARRKSVFESASMPEKLKDCTS 299

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SE+FLVEGDSAGGSA  GR  E QAIL LRGKILNVE+AR D+ L + EI  +I+
Sbjct: 300 KDPSISEIFLVEGDSAGGSAVSGRDPERQAILSLRGKILNVEKARLDRALGNTEIQAMIS 359

Query: 480 ALGTGIGQDS 489
           A GTGIG+D 
Sbjct: 360 AFGTGIGEDF 369


>gi|59859797|gb|AAX09620.1| DNA gyrase subunit B [Pseudomonas entomophila L48]
          Length = 297

 Score =  244 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 155/300 (51%), Positives = 217/300 (72%), Gaps = 4/300 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K P+          RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+L
Sbjct: 118 TNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +N   + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297


>gi|164456693|dbj|BAF97839.1| gyrase B subunit [Vibrio metschnikovii]
          Length = 269

 Score =  244 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 138/271 (50%), Positives = 190/271 (70%), Gaps = 3/271 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  + L I R G I+  ++ +G+   PL V G     TGT + F PS
Sbjct: 1   GLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYRHGVPQAPLAVVGDTE-RTGTTLRFWPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++ F+  +F+YD L  RLRELSFLNS V I L D+R  +       Y+GGI AFV++L+R
Sbjct: 60  AETFTNIEFHYDILAKRLRELSFLNSGVSIRLQDEREADKH-DHFMYEGGIRAFVTHLNR 118

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+          R++  S+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALT
Sbjct: 119 NKTPIHDKVFHFNHDREDGTSVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALT 178

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+EK   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 179 RTLNTYMEKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKAAVE 238

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           S + + L+ +L EHP EAK++  K++DA+  
Sbjct: 239 SAMGEKLNEFLAEHPSEAKMVCSKIIDAARA 269


>gi|164456619|dbj|BAF97802.1| gyrase B subunit [Photobacterium indicum]
          Length = 274

 Score =  244 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 146/276 (52%), Positives = 199/276 (72%), Gaps = 3/276 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L I R G+I+   + +G+ D PL   G   + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRHGSIHHQIYHHGVPDKPLEAIGET-DKTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            + F PS D F+   F+Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI+A
Sbjct: 60  RIRFWPSEDTFTNVVFHYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGIKA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+R+K P+          R++ IS+++AM+WNDG+ E + CFTNNIPQ+DGG+HL+
Sbjct: 119 FVEHLNRNKTPIHSKVFHFDFEREDGISVEVAMQWNDGFQEGIYCFTNNIPQRDGGSHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R ALTR + ++++K   SKK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 GFRGALTRTLNTFMDKEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 238

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           EV+  VES +N+ LS +L E+P +AKI+  K++DAS
Sbjct: 239 EVKPAVESAMNEKLSEFLLENPSDAKIVCSKIIDAS 274


>gi|62084078|dbj|BAD91446.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 300

 Score =  244 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 125/300 (41%), Positives = 188/300 (62%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   F  G +   L V     + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+  K+ +  +PI   G  + I++++AM++   YHE V+ F NNI   +GGTH 
Sbjct: 120 GSYVEFLNDKKEVIFDTPIYTDGELEGIAVEVAMQYTTSYHEVVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++    +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|62084072|dbj|BAD91443.1| DNA gyrase subunit B [Streptococcus pyogenes]
 gi|110225006|dbj|BAE97492.1| DNA gyrase subunit B [Streptococcus pyogenes]
          Length = 300

 Score =  244 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 188/300 (62%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   F  G +   L V     + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFLYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+  K  + ++PI   G  + I++++AM++   Y E V+ F NNI   +GGTH 
Sbjct: 120 GSYVEFLNDKKDVIFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRAALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++    +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|190569869|dbj|BAG48892.1| DNA gyrase subunit B [Bartonella clarridgeiae]
          Length = 325

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 207/325 (63%), Positives = 267/325 (82%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF +G+ D+ L + G   +++GTE+TFLPSS+ F++ +FN++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTHGVADSALKIVGDCDSESGTEITFLPSSETFTMVEFNFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S + I L D+R  + + + + YKGG+  FV ++D+ K+ L+ +PI I   +D IS+D+A+
Sbjct: 61  SGIHILLTDQRRADVQSVELHYKGGLVEFVKHIDQSKRALIDNPIYIANEKDGISVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL+G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEEHP EAKI + KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKIFISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|222481529|gb|ACJ48955.2| DNA gyrase subunit B [Pseudomonas oryzihabitans]
          Length = 328

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 184/331 (55%), Positives = 248/331 (74%), Gaps = 4/331 (1%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           E  +++G+   PL V G   + TGT+V F PS++ FS   F++D L  R+RELSFLNS V
Sbjct: 1   EQVYVHGVPQAPLAVIGET-DTTGTQVHFKPSAETFSNIQFSWDILAKRIRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRW 265
            I L D+R+ +       Y+GG+ AFV YL+ +K  + +     +Q   D + +++A++W
Sbjct: 60  GIVLRDERTGKE--ELFKYEGGLRAFVDYLNTNKTAVNEVFHFQVQREDDGVGVEVALQW 117

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+E    +KK K +  GDD REG
Sbjct: 118 NDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKVATTGDDAREG 177

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK +V K++DA
Sbjct: 178 LTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDA 237

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445
           +  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R
Sbjct: 238 ARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNR 297

Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGT 476
             QAILPL+GKILNVE+ARFDKMLSSQE+GT
Sbjct: 298 RTQAILPLKGKILNVEKARFDKMLSSQEVGT 328


>gi|4514465|dbj|BAA75431.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 304

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 160/307 (52%), Positives = 205/307 (66%), Gaps = 4/307 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L L I R G  YE  + +G     L  TG   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLLLNISRAGKTYEQEYRHGDPVYKLRETG-TTDKSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS++ FS   FN D L  RLRELSFLN+ V+I L D+R           +GG+ 
Sbjct: 60  TTVRFYPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVNLENVYDY--EGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            FV Y++  K  L            + I++++A++WND Y ENV CFTNNIPQKDGGTHL
Sbjct: 118 EFVKYINEGKTHLNDIFHFTAAQADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHL 177

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R+ALTR + +Y++     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVS
Sbjct: 178 AGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVS 237

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV++ VE  +N   S +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA 
Sbjct: 238 SEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAG 297

Query: 410 LPGKLAD 416
           LPGKLAD
Sbjct: 298 LPGKLAD 304


>gi|215271011|emb|CAR48184.1| gyrase B subunit [Vibrio campbellii]
          Length = 317

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 177/319 (55%), Positives = 244/319 (76%), Gaps = 3/319 (0%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           +  ++ +G    PL V G   + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS 
Sbjct: 1   HTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSG 59

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMR 264
           V I L+D+R  +       ++GGI+AFV +L+ +K P+++        R++ IS+++AM+
Sbjct: 60  VSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQ 118

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD RE
Sbjct: 119 WNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDARE 178

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++D
Sbjct: 179 GLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIID 238

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+
Sbjct: 239 AARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRN 298

Query: 445 RENQAILPLRGKILNVERA 463
           R+NQAILPL+GKILNVE+A
Sbjct: 299 RKNQAILPLKGKILNVEKA 317


>gi|89143216|emb|CAJ57505.1| DNA gyrase subunit B [Microbacterium testaceum]
          Length = 362

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 151/363 (41%), Positives = 222/363 (61%), Gaps = 19/363 (5%)

Query: 140 KREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRE 198
           +R+G+++  SF +G +   PL       + TGT +TF P + IF   DF+YDTL+ R ++
Sbjct: 1   RRQGHVWRQSFRDGGVPLAPLSK-DEESDATGTTITFWPDATIFDTIDFDYDTLRTRFQQ 59

Query: 199 LSFLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
           ++FLN  ++I L D+R+              E R  T  Y+ G+  +V +L+R +K  + 
Sbjct: 60  MAFLNKGLRIGLRDERAQSVVTEGEPGAEVTEARHDTFLYERGLVDYVEHLNRVRKADVV 119

Query: 246 SPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           +   I+         I+++LAM+W   Y ENV  + N I   +GGTH  G R+ALT  + 
Sbjct: 120 NDEIIEVESEDTDRKIALELAMQWTTAYTENVFTYANTINTHEGGTHEEGFRAALTTLVN 179

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y   +   K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E R+ V+  V 
Sbjct: 180 RYARANNLLKEKDDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNTEARAYVQKVVG 239

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D L  W + +P +AK I++K +DA+  R AAR+AR+  RRK V + A++P KL DC+ +D
Sbjct: 240 DKLGDWFDRNPGQAKNIIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSKD 299

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR D+ L ++E+  +I A 
Sbjct: 300 PSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDRALGNKEVQAMIQAF 359

Query: 482 GTG 484
           GTG
Sbjct: 360 GTG 362


>gi|190569885|dbj|BAG48900.1| DNA gyrase subunit B [Bartonella quintana]
          Length = 325

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 207/325 (63%), Positives = 262/325 (80%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            I+EMSF +G+ D+PL   G    + GTE+ FLPSS+ F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KIHEMSFTHGVADSPLKTVGDCDAENGTEIRFLPSSETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L+D+R  + R + + Y+GG+  FV Y+D+ KK L+  PI I   +D +S+D+A+
Sbjct: 61  SGVHILLVDQRHADVRSVELHYEGGLTEFVKYIDQSKKALLDCPIYIASVKDGVSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
            WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEKINLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KL SSEVR +VE+ VN+GLSAWLEEHP EAKI+  KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLXSSEVRPIVENLVNEGLSAWLEEHPSEAKIVTSKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|110224996|dbj|BAE97487.1| DNA gyrase subunit B [Streptococcus parasanguinis]
          Length = 300

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 127/300 (42%), Positives = 196/300 (65%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G+IY   +  G + + L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTSLDVRVYKNGSIYYQEYRRGHVVDDLKVIGET-DRTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F+P  +IF+    ++++ L  R++EL+FLN  ++ISL DKR    +E    Y+GGI
Sbjct: 60  TTVHFIPDPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLEQEKHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  + + PI   G  D+I++++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 SSYVEYINENKDVIFEKPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR +  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVVNDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEISN 299


>gi|110224990|dbj|BAE97484.1| DNA gyrase subunit B [Streptococcus mitis]
          Length = 300

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 128/300 (42%), Positives = 191/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + + G I+   +  G +   L V G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F+P  +IF+    F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI
Sbjct: 60  TTVHFIPDPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH 
Sbjct: 120 ASYVEYINENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     +D  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISN 299


>gi|62084076|dbj|BAD91445.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           dysgalactiae]
 gi|110224962|dbj|BAE97470.1| DNA gyrase subunit B [Streptococcus dysgalactiae]
          Length = 300

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 189/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G I+   F  G +   L V     + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P S+IF+    F+Y  L  R++EL+FLN  ++IS+ DKRS   +E    Y+GGI
Sbjct: 60  TTVHFTPDSEIFTETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V +L+  K+ +  +PI   G  + I++++AM++   YHE V+ F NNI   +GGTH 
Sbjct: 120 GSYVEFLNDKKEVIFDTPIYTDGELEGIAVEVAMQYTTSYHEVVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K++  ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++    +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|215271007|emb|CAR48182.1| gyrase B subunit [Vibrio campbellii]
 gi|215271019|emb|CAR48188.1| gyrase B subunit [Vibrio campbellii]
 gi|215271021|emb|CAR48189.1| gyrase B subunit [Vibrio campbellii]
          Length = 317

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 177/319 (55%), Positives = 243/319 (76%), Gaps = 3/319 (0%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           +  ++ +G    PL V G     TGT++ F PS++ FS  +F+YD L  RLRELSFLNS 
Sbjct: 1   HTQTYHHGEPQAPLAVIGDTE-KTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSG 59

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMR 264
           V I L+D+R  +       ++GGI+AFV +L+ +K P+++        R++ IS+++AM+
Sbjct: 60  VSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQ 118

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD RE
Sbjct: 119 WNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDARE 178

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++D
Sbjct: 179 GLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIID 238

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+
Sbjct: 239 AARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRN 298

Query: 445 RENQAILPLRGKILNVERA 463
           R+NQAILPL+GKILNVE+A
Sbjct: 299 RKNQAILPLKGKILNVEKA 317


>gi|19909741|dbj|BAB87066.1| DNA gyrase subunit B [bacterium p6r]
          Length = 271

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 130/270 (48%), Positives = 167/270 (61%), Gaps = 32/270 (11%)

Query: 66  VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
           VT++ DGS +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGL
Sbjct: 1   VTIHADGSLSVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 59

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGND 168
           HGVGVS VNALS WLKL + R+G  YE+ F  G +             +P+ V G + + 
Sbjct: 60  HGVGVSCVNALSVWLKLTVSRDGQRYEIDFSRGQVQNRLIEVVEGAEVSPMRVVGES-DK 118

Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GT+V FLP  +IF     F Y+ L  RLRELSFLN+ V+I L D+R  +         G
Sbjct: 119 RGTKVHFLPDQEIFKENFDFRYEILAKRLRELSFLNNGVRIRLKDERDGKE--DDFSGAG 176

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFT 277
           G++ FV +++  KK L  +     GSR            I ++++M+WND Y E VLCFT
Sbjct: 177 GVKGFVEFINGTKKVLHPTAFHAMGSRPAETYGGIPGTEIGVEISMQWNDSYGEQVLCFT 236

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           NNIPQ+DGGTHL+GLR+A+TR I  Y+E +
Sbjct: 237 NNIPQRDGGTHLTGLRAAMTRVIGKYIESN 266


>gi|188090372|gb|ACD49420.1| gyrase subunit B [Xanthomonas theicola]
          Length = 288

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 140/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI  G++YI  PPLY + +GK   Y+K
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIGLPPLYRLKQGKQELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL N ++     +    +  I+ + L   +      +  +      +D   + 
Sbjct: 61  DDNALNAYLANSAVEGAALIPASDEPPITSSALEKLLLLFASANDAVARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHG--SINNSDILVKRI 667
             +     +      E DQ  ++     + NR +    + +  +        + +L  R 
Sbjct: 121 ALIDLPPLDVAQLETEGDQHPSLEALQAVLNRGSLGTARYQLRFEPGTEHRPATLLAVRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL  +   S   +  R  +  +         ++      ++         +F
Sbjct: 181 HMGEELTQVLPMAVFESGELRPLREVALALHGLVRAGAQIVRGNKTQQVGSFAQAHAWLF 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR L + +I +A  AD 
Sbjct: 241 DEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLRQGRIEEAVAADQ 288


>gi|164456741|dbj|BAF97863.1| gyrase B subunit [Vibrio wodanis]
          Length = 279

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 145/281 (51%), Positives = 196/281 (69%), Gaps = 4/281 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  ++L I R+G I++ ++ +G    PL V     + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGEIFQQTYCHGEPQAPLAVV-GTTDTT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS   F+  +F YD L  RLRELSFLNS V I L D R  E +     ++GGI
Sbjct: 60  GTKIRFWPSEQTFTNVEFVYDILAKRLRELSFLNSGVSIILQDMR-EEDKSDHFMFEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           +AFV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG 
Sbjct: 119 QAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGA 178

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 HLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKL 238

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  
Sbjct: 239 VSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARA 279


>gi|290796570|gb|ADD64855.1| gyrase subunit B [Xanthomonas arboricola]
          Length = 279

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 135/279 (48%), Gaps = 7/279 (2%)

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L
Sbjct: 1   IILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAAL 60

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
             YL + ++     +    +  I+   L   +      ++ I      +D   +   +  
Sbjct: 61  NAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDL 120

Query: 620 GVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQ 672
              + +  Q              + NR      + +  +  + +  ++ ++  R   G +
Sbjct: 121 PPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEE 180

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              VL   +  S   +  R  S  + +       ++       IT        +    ++
Sbjct: 181 FTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKR 240

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA 
Sbjct: 241 GRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAV 279


>gi|294661429|ref|YP_003579882.1| DNA topoisomerase II large subunit [Klebsiella phage KP15]
 gi|292660590|gb|ADE34838.1| DNA topoisomerase II large subunit [Klebsiella phage KP15]
          Length = 632

 Score =  243 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 142/615 (23%), Positives = 243/615 (39%), Gaps = 78/615 (12%)

Query: 18  LKGLDAVKKRPSMYIGDTDGE----------------SGLHHMIYEVLDNAIDESLE--- 58
           +   D ++ RP+MY+G  + E                 GL  +I E+LDN+IDE++    
Sbjct: 31  MSDRDHIRLRPNMYVGSVNKEAHERFIMGQYRKVEYVEGLVKIINEILDNSIDEAIRTEF 90

Query: 59  GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG---ISAAEVIMTRLHAGGKFNQKSYK 115
            +A+ I VT++      +SDNGRGIP D  K      +       T   +G  F+ K+ +
Sbjct: 91  KHANKIDVTIDH-NLVKISDNGRGIPQDDVKTPDGKIVPKPVAAWTMAKSGSNFDDKN-R 148

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           V+ G++GVG  + N  SS              ++  +G     +    S   + GT V F
Sbjct: 149 VTMGMNGVGSFLTNCYSSIFIGETANGKRKVTINCTDG--AQNIDYRTSPSKEQGTTVKF 206

Query: 176 LPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            P   +F V   + +T   ++ RL  L+    SV+ +   +                   
Sbjct: 207 TPDFSMFGVTGIDEETKEVIKDRLMALAVAFPSVKFTYNGETL----------------- 249

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW---NDGYHENVLCFTNNIPQKDGGTHL 289
                            + G +  +  +  + +   +         F N +  K+GG H+
Sbjct: 250 --------SNRFPLYASMYGDKTIVQTNNRLSFILASTEDGFKQKSFVNGLDTKNGGVHV 301

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD-PRFSSQTKEKLV 348
             +   +  ++   ++K    +  K        +E  T V+ +   + P F SQTKE+L 
Sbjct: 302 ECMIDGIYSELEPMIKKKHSIEIPKAR-----VKECLTLVVFLHNFNAPAFDSQTKERLA 356

Query: 349 SS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           ++  E  +   +     ++  + + P     I++  L      +AA   +   + K    
Sbjct: 357 NTAGEFNNH-ANLNYKKIAKMIMDTPEIITPIIESALIRKQAAEAAAITKAKKKAKKAKI 415

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
              +P    D       ++ LFL EGDSA G   + R+ E Q   PLRGK LN     F 
Sbjct: 416 AKHVPASGIDTP---GIETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSFT 472

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
            ++ ++E+  L+  L    G      + + Y  I IM DADVDG  I TLLL FF R  P
Sbjct: 473 DIIKNKELFELMAILNIHPGDT----SGMTYDNIGIMVDADVDGGDILTLLLAFFSR-WP 527

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           SL     +  I+ P+     G+  ++    +    +        +   +    G + K D
Sbjct: 528 SLFAEKRIRYIRTPIVIAKVGREEKWFYSLDEFAPFRDK----AKDVRYIKGLGSLRKED 583

Query: 587 LRNFIDDALKIDKLI 601
               + D LK D ++
Sbjct: 584 YDRVLGDQLKYDVIV 598


>gi|267847007|gb|ACY80696.1| gyrase B [Xanthomonas arboricola]
 gi|267847009|gb|ACY80697.1| gyrase B [Xanthomonas arboricola]
 gi|267847011|gb|ACY80698.1| gyrase B [Xanthomonas arboricola]
          Length = 286

 Score =  243 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 134/280 (47%), Gaps = 7/280 (2%)

Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560
            +MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L 
Sbjct: 7   HLMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALN 66

Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620
            YL + ++     +    +  I+   L   +      ++ I      +D   +   +   
Sbjct: 67  AYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLP 126

Query: 621 VFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQE 673
             + +  Q              + NR      + +  +  + +  ++ ++  R   G + 
Sbjct: 127 PLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEF 186

Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733
             VL   +  S   +  R  S  + +       ++       IT        +    ++G
Sbjct: 187 TQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRG 246

Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
             +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  A
Sbjct: 247 RQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAA 286


>gi|12060214|dbj|BAB20461.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
          Length = 303

 Score =  243 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 156/306 (50%), Positives = 217/306 (70%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGV VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TG
Sbjct: 1   DYSYKVSGGLHGVSVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T++ F  S + F    F++D L  R+RELSFLNS V I L D+R+ +       Y+GG+ 
Sbjct: 60  TQIHFKASGETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERTGKE--ELFKYEGGLR 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL 
Sbjct: 118 AFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSS
Sbjct: 178 GFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA L
Sbjct: 238 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|289600028|gb|ADD12962.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600030|gb|ADD12963.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600032|gb|ADD12964.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600036|gb|ADD12966.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600038|gb|ADD12967.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600040|gb|ADD12968.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600042|gb|ADD12969.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600044|gb|ADD12970.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600048|gb|ADD12972.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600050|gb|ADD12973.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600060|gb|ADD12978.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 308

 Score =  243 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 169/310 (54%), Positives = 225/310 (72%), Gaps = 2/310 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 298

Query: 435 AGGSAKQGRS 444
           AGGSAKQGR+
Sbjct: 299 AGGSAKQGRN 308


>gi|322510575|gb|ADX05889.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 1]
          Length = 1083

 Score =  243 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 117/632 (18%), Positives = 223/632 (35%), Gaps = 73/632 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT--------------------DGESGLHHMIYEVLDN 51
           A   Q     + +   P  YIG                      D   GL  +  E + N
Sbjct: 4   ATQYQKKTDKEHILDNPDTYIGSIENINGPMYVFEEGKITSKHMDYNPGLFKLFDEGIVN 63

Query: 52  AIDESLE-----------GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
             D  +               ++I + ++ D   T+++NG GI  + H    +   E++ 
Sbjct: 64  CRDHVVRMIQQKETNPAVNLVNMINIEISDD-MITMTNNGNGIDVEKHPTYDVWIPELVF 122

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNP 158
             L     +N+   K++GG +G G  +V   S++  +          Y  +F   +    
Sbjct: 123 GHLRTSTNYNKDEEKITGGKNGFGFKLVLIWSTYGMIETVDHVRKLKYTQTFEQNLDIIH 182

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLREL-SFLNSSVQISLIDKR 214
                       T V F P      +   + D       R+ ++       V++ L    
Sbjct: 183 PPTITKCSKQPYTIVKFKPDYKRLGLNGLSQDMISLFHRRVYDIAGITTKDVKVKLNSNV 242

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
                          +  +S                   R + S+ L            +
Sbjct: 243 LDVKTFNHYIELYNDQDKISEAPN--------------ERWSYSVCL------SEEFKQV 282

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N I    GG H+  +   + +++ +Y       KK K  +     +E     L+  +
Sbjct: 283 SFVNGIFTGKGGKHVDYITQQIIKKLIAY-----IEKKKKIEIKPSILKEQMYIFLNCTI 337

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
            +P F SQTK+ L +   +      V+D     L +       I+++  + S +++    
Sbjct: 338 VNPSFDSQTKDYLNTPPSKFGSSCVVSDKFIEKLAKLG-----IMEQSCELSKIKEKNNS 392

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RSRENQAIL 451
            +    ++  +              +D K   L L EGDSA      G     R    + 
Sbjct: 393 KKTDGNKQKNIRGIPKLVDANYAGTKDSKLCTLILCEGDSAKAGILSGLSPNDRNIYGVY 452

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           P++GK+LNV      K+  ++EI  +   +G    +   + ++LRY+KI+ MTD D+DG+
Sbjct: 453 PMKGKLLNVRGEATKKINENKEIIEIKKIMGLESNKKYKNTDELRYNKILFMTDQDLDGS 512

Query: 512 HIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS-LS 569
           HI+ L +  F     SL+  +GFL  +  P+   ++G   +   +E+  E +    +   
Sbjct: 513 HIKGLCINLFECLWSSLLDISGFLGFMNTPILKASKGTHKKQFYNEQEYELWKKENNEGK 572

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601
                +    G  +  + + +  D   +D L+
Sbjct: 573 GWAIKYYKGLGTSTSKEFKEYFKDKKTMDILL 604


>gi|307343782|emb|CBJ19496.1| gyrase B subunit [Micromonospora peucetia]
          Length = 354

 Score =  243 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 154/354 (43%), Positives = 228/354 (64%), Gaps = 8/354 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I ++G ++   + N     PL   G + + TG+ V+F P  D+F   DF++ T+  R+
Sbjct: 2   VEIHKDGFVWRQQYHNSKP-GPLDK-GESTDRTGSAVSFWPDPDVFETVDFDFQTIYRRI 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN  + I L+D+R PE      RE+T  YKGGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLNRGLTIHLLDERVPEEEDGRQREVTFCYKGGIADFVRHLNASKNPIHKTVVEFG 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y  +    K
Sbjct: 120 AEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGTEKKVLK 179

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
                + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +
Sbjct: 180 -GDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAKII++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNAEVQALITALGTGI 352


>gi|110225004|dbj|BAE97491.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 300

 Score =  243 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 189/300 (63%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L + + + G I+   +  G +   L + G   + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTG 59

Query: 171 TEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P   IF+    F++D L  R++EL+FLN  +QIS+ DKR    +     Y+GGI
Sbjct: 60  TTVHFTPDPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V Y++ +K  +  +PI   G  D+I++++AM++  GYHENV+ F NNI   +GGTH 
Sbjct: 120 ASYVEYINENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y  K+   K ++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++  S +L E+P  AK IV+K + A+  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISN 299


>gi|11078721|dbj|BAB17365.1| DNA gyrase subunit B [Pseudomonas fulva]
          Length = 296

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 156/299 (52%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEQLILTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTHIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LT
Sbjct: 118 TNKTPVNQVFHFSVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+E+   +KK+K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RSLNSYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +N   S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|328497261|dbj|BAK18794.1| DNA gyrase B [Xanthomonas arboricola]
 gi|328497263|dbj|BAK18795.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 278

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 133/278 (47%), Gaps = 7/278 (2%)

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  Y
Sbjct: 1   MTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAY 60

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           L + ++     +    +  I+   L   +      ++ I      +D   +   +     
Sbjct: 61  LASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPL 120

Query: 623 NCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQF 675
           + +  Q              + NR      + +  +  + +  ++ ++  R   G +   
Sbjct: 121 DVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQ 180

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735
           VL   +  S   +  R  S  + +       ++       IT        +    ++G  
Sbjct: 181 VLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQ 240

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  A
Sbjct: 241 VQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAA 278


>gi|190148834|gb|ACE63392.1| DNA gyrase B subunit [Pseudonocardia asaccharolytica]
          Length = 346

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 17/348 (4%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L + I   G ++   +       PL   G     +GT +TF    D+F    +N 
Sbjct: 1   ALSVALDVEIHSAGKVWRQRYDRSRP-GPLRK-GEDTARSGTSITFWADPDVFETTFYNL 58

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSP---------------EPREITMFYKGGIEAFVS 234
           +T+  RL+E++FLN  + I L D+R+                + +E T  Y GG+E FV+
Sbjct: 59  ETISRRLQEMAFLNKGLTIVLRDERNGHSDEQAEPDAEGYVAKIKETTFHYPGGLEDFVA 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +++R K P+ +  +  Q + +N  +++AM+WN GY E+V  F N I   +GGTH  G R+
Sbjct: 119 HINRSKDPIHKKLVAFQAATENHQVEVAMQWNSGYTESVYTFANTINTHEGGTHEEGFRA 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALT  +  Y       K    ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S
Sbjct: 179 ALTSTVNRYARDKKLLKDKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKS 238

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+   N+ L+ WLE +P EAK IV K + ++  R AAR+AR+L RRK   DI  LPGKL
Sbjct: 239 FVQRVSNEWLADWLERNPTEAKTIVNKAVSSAQARIAARKARELVRRKSAGDIGGLPGKL 298

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           ADC   DP +SE+++VEGDSAGGSAK GR    QAILP+RGKI+NVE+
Sbjct: 299 ADCRSSDPSRSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKIINVEK 346


>gi|1944013|dbj|BAA19518.1| subunit B protein of DNA gyrase [Delftia acidovorans]
          Length = 330

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 170/333 (51%), Positives = 226/333 (67%), Gaps = 26/333 (7%)

Query: 107 GKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------I 154
           GKF+Q SYKVSGGLHGVGVS VNALS WLKL ++R+G +YE+ F  G            +
Sbjct: 1   GKFDQNSYKVSGGLHGVGVSCVNALSIWLKLNVRRDGEVYEIDFSRGHVQNRPIEIVDGV 60

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDK 213
             +P+ V G + +  GT+V FLP ++IF+    F Y+ L  RLRELSFLN+ V+I L D+
Sbjct: 61  EVSPMRVVGKS-DKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDE 119

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAM 263
           R  + RE      GG+  FV +++ +KK L  +     G+R            I +++AM
Sbjct: 120 R--DGREDDFSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVAM 177

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+E++  +KK K  V GDD R
Sbjct: 178 QWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMR 237

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K++
Sbjct: 238 EGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPNDAKILCSKIV 297

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           DA+  R+AAR+AR++TRRKGVLD   LPGKLAD
Sbjct: 298 DAARAREAARKAREMTRRKGVLDGMGLPGKLAD 330


>gi|58415312|emb|CAH04914.1| DNA gyrase subunit B [Mycetocola lacteus]
 gi|117675823|emb|CAL69182.1| DNA gyrase subunit B [Mycetocola lacteus]
          Length = 358

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 152/359 (42%), Positives = 221/359 (61%), Gaps = 19/359 (5%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
             +F NG+ D PL     A ++TGT +TF P+++IF   +F+YDTL+ R ++++FLN  +
Sbjct: 1   RATFHNGVADAPLSK-DEATDETGTTITFWPNAEIFETVEFDYDTLRTRFQQMAFLNKGL 59

Query: 207 QISLIDKRSPE--------------PREITMFYKGGIEAFVSYLDRHK--KPLMQSPIRI 250
           +I LID+R  E               +     Y+ G+  +V +L+R K  + +    I  
Sbjct: 60  RIELIDERVDEIEEPVDGEEAAVPTKKHNVFHYERGLVDYVEHLNRAKRSELVNDEIISF 119

Query: 251 QGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
           +       I++++AM+W   Y E+V  + N I   +GGTH  G R+ALT  +  Y  +  
Sbjct: 120 EQEDTERKIALEIAMQWTTSYSESVHTYANTINTHEGGTHEEGFRAALTTLVNRYAREKN 179

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K    ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+  V D LS W 
Sbjct: 180 ILKDKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVVGDQLSDWF 239

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           E +P+ AK I+ K L A+  R AAR+AR+  RRKG+L+   +PGKL DC  +DP  SE+F
Sbjct: 240 ERNPIIAKAIITKALSAATARLAARKARETARRKGLLEGGGMPGKLKDCQSKDPSVSEIF 299

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           +VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L + E+  +ITA G GIG+
Sbjct: 300 IVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALGNAEVQAMITAFGAGIGE 358


>gi|4514439|dbj|BAA75418.1| DNA gyrase subunit B [Acinetobacter calcoaceticus]
          Length = 303

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 161/306 (52%), Positives = 208/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L L I R G ++E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   F+   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFTQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       + + I +++A++WN+ Y ENV CFTNNIPQKDGG+HL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTADTDNGIGVEVALQWNESYQENVRCFTNNIPQKDGGSHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|209407304|emb|CAP72537.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 294

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 154/297 (51%), Positives = 214/297 (72%), Gaps = 3/297 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G    D+GTE+ F 
Sbjct: 1   SGGLHGVGVSVVNALSEELILTIRREGKVWEQIYRHGVPQAPLAAVGETE-DSGTEIHFK 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+   F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL
Sbjct: 60  PSAETFANIHFSWDILAKRLRELSFLNSGVGIVLRDERNAKE--ELFKYEGGLSAFVAYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSAL
Sbjct: 118 NTNKTPVNEVFHFNIQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           E  +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGK
Sbjct: 238 EQEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 294


>gi|62461702|gb|AAX83009.1| GyrB [Vibrio campbellii]
          Length = 261

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 134/263 (50%), Positives = 187/263 (71%), Gaps = 3/263 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  S +V+GGLHGV VSVVNALS  + L I R G+I+  ++ +G    PL V G    
Sbjct: 1   KFDDNSDRVAGGLHGVRVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDTE- 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++G
Sbjct: 60  KTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEG 118

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           GI+AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGG
Sbjct: 119 GIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGG 178

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           THL+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+K
Sbjct: 179 THLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDK 238

Query: 347 LVSSEVRSVVESFVNDGLSAWLE 369
           LVSSEV+S VES + + LS +L 
Sbjct: 239 LVSSEVKSAVESAMGEKLSEFLI 261


>gi|215271017|emb|CAR48187.1| gyrase B subunit [Vibrio campbellii]
          Length = 317

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 174/319 (54%), Positives = 244/319 (76%), Gaps = 3/319 (0%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           +  ++ +G    PL V G   + TGT++ F PS++ F+  +F+YD L  RLRELSFLNS 
Sbjct: 1   HTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSG 59

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMR 264
           V I L+D+R  +       ++GGI+AFV +L+ +K P+++        R++ I++++AM+
Sbjct: 60  VSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQ 118

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   SKK K +  GDD RE
Sbjct: 119 WNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDARE 178

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++D
Sbjct: 179 GLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIID 238

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+
Sbjct: 239 AARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRN 298

Query: 445 RENQAILPLRGKILNVERA 463
           R+NQAILPL+GKILNVE+A
Sbjct: 299 RKNQAILPLKGKILNVEKA 317


>gi|215271009|emb|CAR48183.1| gyrase B subunit [Vibrio campbellii]
 gi|215271013|emb|CAR48185.1| gyrase B subunit [Vibrio campbellii]
 gi|215271015|emb|CAR48186.1| gyrase B subunit [Vibrio campbellii]
          Length = 317

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 174/319 (54%), Positives = 244/319 (76%), Gaps = 3/319 (0%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           +  ++ +G    PL V G   + TGT++ F PS++ F+  +F+YD L  RLRELSFLNS 
Sbjct: 1   HTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIEFHYDILAKRLRELSFLNSG 59

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMR 264
           V I L+D+R  +       ++GGI+AFV +L+ +K P+++        R++ I++++AM+
Sbjct: 60  VSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQ 118

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   SKK K +  GDD RE
Sbjct: 119 WNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDARE 178

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++D
Sbjct: 179 GLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLSEFLIENPTEAKMVCSKIID 238

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+
Sbjct: 239 AARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRN 298

Query: 445 RENQAILPLRGKILNVERA 463
           R+NQAILPL+GKILNVE+A
Sbjct: 299 RKNQAILPLKGKILNVEKA 317


>gi|4514441|dbj|BAA75419.1| DNA gyrase subunit B [Acinetobacter calcoaceticus]
          Length = 303

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 161/306 (52%), Positives = 207/306 (67%), Gaps = 3/306 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALSS L L I R G ++E  + +G    PL V G   + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T V F PS   F+   FN + L  RLRELSFLN+ V+I L D+R     E    Y+GG+ 
Sbjct: 60  TTVRFWPSELTFTQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLS 117

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV Y++  K  L +       +   I +++A++WN+ Y ENV CFTNNIPQKDGG+HL+
Sbjct: 118 EFVKYINEGKTHLNEIFHFTADTDSGIGVEVALQWNESYQENVRCFTNNIPQKDGGSHLA 177

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALTR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSS
Sbjct: 178 GFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           EV+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA L
Sbjct: 238 EVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGL 297

Query: 411 PGKLAD 416
           PGKLAD
Sbjct: 298 PGKLAD 303


>gi|188090404|gb|ACD49436.1| gyrase subunit B [Xanthomonas codiaei]
          Length = 288

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 138/288 (47%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++     +    +  I+   L   +      +  I      +D   + 
Sbjct: 61  DDAALNAYLASSAVEGAALIPAADEPPITGEALEKLLLLFAGANDAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D    +     + NR      + +  +  +  N  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPTLDALQAVLNRGTLGTARYQLRFDPATENTAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  +  +         ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVALALHGLVREGAQIVRGNKSHTITSFGQAHAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+ ++ +   AD 
Sbjct: 241 EEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQGRLEEGVAADQ 288


>gi|190569877|dbj|BAG48896.1| DNA gyrase subunit B [Bartonella silvatica]
          Length = 325

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 203/325 (62%), Positives = 263/325 (80%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
             +EMSF +G+ D PL +    G ++GTE+ FLPS + F++ +F+++TL+ RLREL+FLN
Sbjct: 1   KTHEMSFTHGVADFPLKIVDDCGTESGTEIRFLPSPETFTMVEFDFETLERRLRELAFLN 60

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           S V I L+D+R  + + +T+ Y+GG+  FV Y+D+ KK L+  PI I   +D +S+D+A+
Sbjct: 61  SGVHILLVDERHADIKSVTLHYEGGLIEFVKYIDQTKKTLLNQPIYITSEKDGMSVDVAL 120

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
             ND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI  Y E S  +KK+K ++ GDDCR
Sbjct: 121 WRNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEKVNLTGDDCR 180

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN+GLSAWLEEHP EAK+++ KV+
Sbjct: 181 EGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNEAKLLISKVV 240

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           +A+  R+AAR+AR+LTRRKG LDI SLPGKLADC ERDP +SE+F+VEGDSAGGSAK GR
Sbjct: 241 EAATAREAARKARELTRRKGALDITSLPGKLADCQERDPARSEIFIVEGDSAGGSAKSGR 300

Query: 444 SRENQAILPLRGKILNVERARFDKM 468
           SR+NQAILPLRGKILNVERARFD+M
Sbjct: 301 SRQNQAILPLRGKILNVERARFDRM 325


>gi|110084486|gb|ABG49400.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
          Length = 310

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 176/313 (56%), Positives = 229/313 (73%), Gaps = 3/313 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G A   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRSRENQA 449
           GSAKQGR+R+NQA
Sbjct: 298 GSAKQGRNRKNQA 310


>gi|307343826|emb|CBJ19518.1| gyrase B subunit [Micromonospora sp. GUI43]
          Length = 354

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 154/354 (43%), Positives = 229/354 (64%), Gaps = 8/354 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + N    +PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGSVWRQHYTNSKP-SPLEK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFE 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 352


>gi|54125543|gb|AAV30538.1| gyrase B [Serratia sp. MF 416]
          Length = 297

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 162/300 (54%), Positives = 219/300 (73%), Gaps = 4/300 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L+L I+REG ++E ++ +G    PL V G   + TGT + F PS   
Sbjct: 1   GVGVSVVNALSEKLELVIRREGKVHEQTYKHGEPQAPLKVVGET-DQTGTTLRFWPSFQT 59

Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F +  +F YD L  RLRELSFLNS V I L DKR+   RE    Y+GGI AFV YL+++K
Sbjct: 60  FTNNIEFEYDILAKRLRELSFLNSGVSIRLKDKRND--REDHFHYEGGIRAFVEYLNKNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR +
Sbjct: 118 TPIHPTVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +
Sbjct: 178 NTYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ L  +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ER
Sbjct: 238 NEKLVDYLMENPADAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQER 297


>gi|159576586|dbj|BAF92840.1| DNA gyrase subunit B [Halomonas sp. Sa4-2I]
          Length = 310

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 158/302 (52%), Positives = 207/302 (68%), Gaps = 3/302 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKV GGLHGVGVSVVNALS  LKL I R+G ++E  + +G+ + PL V G+    +GT V
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELKLTIWRQGKVHEQIYRHGVPEAPLAVVGNTE-KSGTLV 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS   F    F+Y+ L  RLRELSFLNS V I LID+RS +       Y+GG++AFV
Sbjct: 60  RFKPSPLTFGNIAFHYEILAKRLRELSFLNSGVAIRLIDERSGKE--ELFHYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L+ +K  L           D I +++AM+WND + EN+ C+TNNIPQ+DGGTHL+G R
Sbjct: 118 DHLNTNKAALNPVFHFEMEREDGIGVEVAMQWNDAFSENIFCYTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALTR + SY+E     KK K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 178 AALTRTLNSYIEAEGLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 237

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           + VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LP +
Sbjct: 238 TAVEQEMGRLFSEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPQR 297

Query: 414 LA 415
           + 
Sbjct: 298 MP 299


>gi|169248052|gb|ACA51809.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 321

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 184/323 (56%), Positives = 242/323 (74%), Gaps = 4/323 (1%)

Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
           +  + +G+   PL V G   + TGT++ F PS   F+  +F YD L  RLRELSFLNS V
Sbjct: 1   QQIYCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGV 59

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMR 264
            I L D R  E +     ++GGI+AFV++L+R+K P+ Q        R    I +++AM+
Sbjct: 60  SIRLQDMR-EEDKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQ 118

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WND Y EN+ C+TNNIPQ+DGG HLSG RSALTR + S+++K   SKK K S  GDD RE
Sbjct: 119 WNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDARE 178

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++D
Sbjct: 179 GLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIID 238

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+
Sbjct: 239 AARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRN 298

Query: 445 RENQAILPLRGKILNVERARFDK 467
           R+NQAILPL+GKILNVE+ARFDK
Sbjct: 299 RKNQAILPLKGKILNVEKARFDK 321


>gi|116069858|gb|ABI13058.2| DNA gyrase subunit B [Cupriavidus sp. BKME-6]
          Length = 319

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 158/322 (49%), Positives = 216/322 (67%), Gaps = 20/322 (6%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-----------------I 154
            SYKVSGGLHGVGVS VNALS WL+L ++R+G  + + F  G                 +
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQAHLLEFAQGAVQNRLVETVTGPDGQPV 60

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             +P+ V G   +  GTEV FL   +IF+  +F+Y+ L  R+RELSFLN+ V I L D+R
Sbjct: 61  EVSPMKVIGPT-DKRGTEVHFLADEEIFTNVEFHYEILAKRIRELSFLNNGVHIRLADQR 119

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           + +       + GG++ FV Y++R K  L  +       +D I+++++M+WNDGY+E VL
Sbjct: 120 TGKE--EDFAFSGGVKGFVEYINRGKSTLHPNIFYANTEKDGIAVEVSMQWNDGYNEQVL 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+GLR+A+TR +  Y+E++  +KK K    GDD REG   VLS+K+
Sbjct: 178 CFTNNIPQRDGGTHLTGLRAAMTRVMNKYIEENEIAKKAKVETTGDDMREGLACVLSVKV 237

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+FSSQTK+KLVSSEVR  VE  V   L  +L E P++AKII  K++DA+  R+AAR+
Sbjct: 238 PEPKFSSQTKDKLVSSEVRLPVEELVAKALGDFLLETPVDAKIICGKIVDAARAREAARK 297

Query: 395 ARDLTRRKGVLDIASLPGKLAD 416
           AR++TRRKGVLD   LPGKLAD
Sbjct: 298 AREMTRRKGVLDGMGLPGKLAD 319


>gi|108802302|ref|YP_642499.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. MCS]
 gi|119871455|ref|YP_941407.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. KMS]
 gi|108772721|gb|ABG11443.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. MCS]
 gi|119697544|gb|ABL94617.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. KMS]
          Length = 677

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 147/672 (21%), Positives = 257/672 (38%), Gaps = 54/672 (8%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYA-DIITV 66
           SY A  I  L  +   + RP++ +G     + L     E++DNAI+E +   +    +T+
Sbjct: 2   SYTAADITELDDVQHTRLRPAVNLGLDVLNTALR----ELIDNAIEEVADPSHGGSAVTI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS--GGLHGVG 124
           TL+ DGS +V+D+GRG+P D     G +     +    AGGKF+  +   S   GL+G+G
Sbjct: 58  TLHDDGSVSVADDGRGLPVDSDPVNGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGIG 117

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------DNPLVVTGS-A 165
            +    +S+   + ++R G  Y  SF  G                       L  TG+  
Sbjct: 118 AAAAVFISARTDVTVRRAGKTYLQSFGRGYPGVFEGKDFDPDAPFTRADTQKLRGTGNRK 177

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----- 220
            +  GT V  L    +      +   +  R    + ++  V +S+ID+  P         
Sbjct: 178 PDVHGTTVRILFDPAVVPDSQIDIGEVLLRAHAAARMSPGVHLSVIDEGWPGDEVAPALL 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRI---QGS----RDNISIDLAMRWNDGYHENV 273
                  G +  +  +             +   +G     R       ++         V
Sbjct: 238 EPFTGPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPATV 297

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG--DDCREGFTSVLS 331
             F N +    GG+HL+     L+  +     +       K        D        + 
Sbjct: 298 AAFCNTVRTPGGGSHLTAAMKGLSEALADRASRMRDLGLAKGEEGPEAQDFAAVTALAVD 357

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL------EAKIIVKKVLDA 385
            + PD  + SQ K  + S  +   +   V   ++ W              K+ ++     
Sbjct: 358 TRAPDVAWDSQAKTAVSSRSLNVAMAPDVARSVTIWAANPANGDAVSLWTKLALESARAR 417

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSER-DPKKSELFLVEGDSAGGSAKQGRS 444
                A  R+R  ++ KG+    SLP KL    E      +ELFL EGDSA G+ K  R 
Sbjct: 418 RSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAARD 477

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
              QA  PL+GK  NV     +K  +  E  ++   LG G+ +D+ D    RY +I+  +
Sbjct: 478 ATFQAAFPLKGKPPNVYGFALNKARAKDEFDSIERILGCGV-RDNCDPELCRYDRILFAS 536

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DAD DG +I + L++ F      L+  G +Y+  PPL+ +  G    Y +DE   +  + 
Sbjct: 537 DADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAVA 596

Query: 565 NQSLSEEIE---LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
               + + +         G +  +D  N + D  +  + +   +P+  +  +   +  G 
Sbjct: 597 KMKATSKRKVEVQRNKGLGEMDADDFWNTVLDPQR--RTVIRVHPDDSENKLHHTLFGGP 654

Query: 622 FNCESDQEINVS 633
                    +V+
Sbjct: 655 PEGRRTWMADVA 666



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-DKIKITGPCS---LLDTIFSIGRK 732
           +  S I  F   Y+ +    +    L  L ++ +G  +I           +  + +  ++
Sbjct: 545 INSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAVAKMKATSKR 604

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
            + +QR KGLGEM+A   W T L+P  R+++RV   D+   + L   L G   E RR ++
Sbjct: 605 KVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRVHPDDSE--NKLHHTLFGGPPEGRRTWM 662

Query: 793 QENSLPS---ALD 802
            + +      ALD
Sbjct: 663 ADVASRVDTTALD 675


>gi|37956521|gb|AAP15347.1| gyrase B [Pelobacter propionicus]
          Length = 308

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 146/300 (48%), Positives = 208/300 (69%), Gaps = 5/300 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           Y+V  GLHGVGVSVVNALS  L+L I+R+G+++  S++ G+   PL + G      GT++
Sbjct: 2   YRV--GLHGVGVSVVNALSCKLELEIRRDGHVHRQSYLRGVPQEPLKIDGET-IKRGTKI 58

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           TF P  +IF   +F+++TL  RLREL+FLN+ V+I +ID RS +       Y+GGI++FV
Sbjct: 59  TFWPDDEIFETTEFSFETLSQRLRELAFLNAGVKIQIIDDRSEKS--YEFLYEGGIKSFV 116

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+R K  L  +PI  +G +DN  I++A+++ND Y E +  F NNI   +GGTHLSG R
Sbjct: 117 EYLNRAKSALHATPIYFKGVKDNAEIEIAIQYNDSYEEKIFTFANNINTHEGGTHLSGFR 176

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           SALTR + +Y   +   K  K S+ GDD REG  +V+S+K+PDP+F  QTK KL +SE++
Sbjct: 177 SALTRTMNAYAAANNLLKNVKVSISGDDLREGIAAVISVKLPDPQFEGQTKTKLGNSEIK 236

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
             VE+ +N+ L+ +LEE+P  AK I++K ++A+  R+AAR+ARDLTRRKG LD  SLPGK
Sbjct: 237 GFVETLMNEQLATFLEENPQVAKKILEKGIEAARAREAARKARDLTRRKGALDGLSLPGK 296


>gi|189164048|gb|ACD77134.1| FusA [Geobacter sp. M21]
          Length = 263

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 162/263 (61%), Positives = 208/263 (79%)

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNI   +GGTHL G ++AL R + +Y   +   K  K ++ G+D REG T+V+S+K+  P
Sbjct: 1   NNINTHEGGTHLIGFKAALMRTMNTYANTNNLLKNVKVAISGEDLREGLTAVISVKISQP 60

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL +SEV+  VE+ +N+ L+ +LEE+P  A+ I++K +DA+  R+AAR+AR+
Sbjct: 61  QFEGQTKTKLGNSEVKGYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARE 120

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           LTRRKG L++ +LPGKLADC E+DP   ELFLVEGDSAGGSAKQGR R+ QAILPL+GKI
Sbjct: 121 LTRRKGALEVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKI 180

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVE+ARFDKML+SQEI TLI+ALGT IG++ FDI KLRYH+II+MTDADVDG+HI TLL
Sbjct: 181 LNVEKARFDKMLASQEIRTLISALGTSIGKEDFDIAKLRYHRIIVMTDADVDGSHILTLL 240

Query: 518 LTFFFRQMPSLIHNGFLYIIKPP 540
           LTFFFRQM  LI  G+LYI +PP
Sbjct: 241 LTFFFRQMLELIERGYLYIAQPP 263


>gi|307343784|emb|CBJ19497.1| gyrase B subunit [Micromonospora rifamycinica]
          Length = 355

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 154/354 (43%), Positives = 227/354 (64%), Gaps = 8/354 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G ++   + N   D PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGFVWRQKYHNSKPD-PLDK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN ++ I L+D+R       +PRE+T +Y+GGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLNRALSIHLLDERVAEGEEGKPREVTFYYEGGIADFVRHLNASKNPMHKTVVEFA 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        
Sbjct: 120 AEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGSDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 352


>gi|223674738|gb|ACN13065.1| DNA gyrase subunit B [Pseudomonas sp. 2144.2]
          Length = 270

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 137/273 (50%), Positives = 192/273 (70%), Gaps = 3/273 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 178 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 237

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
           ++ VE  +    S +L E+P EAK++V K++DA
Sbjct: 238 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDA 270


>gi|148470217|gb|ABQ66056.1| gyrase b [uncultured bacterium]
          Length = 314

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 165/328 (50%), Positives = 208/328 (63%), Gaps = 22/328 (6%)

Query: 97  EVIMTRLHAGGKFNQKSY-KVSGGLHGVGVSVVNALSSWLKLRI-KREGNIYEMSFINGI 154
           EVIMT LHAGGKF+  SY +VSGGLHGVGVSVVNALSS L L I  R G ++E  + +G 
Sbjct: 1   EVIMTVLHAGGKFDDNSYTRVSGGLHGVGVSVVNALSSKLHLIILHRAGQVHEQEYHHGD 60

Query: 155 LDNPLVV-TGSAGNDTGTEVTFLPSSDIF----SVQDFNYDTLQHRLRELSFLNSSVQIS 209
              PL V  G   + +GT V F PS   F        FN + L  RLRELSFLN+ V+I 
Sbjct: 61  TQYPLRVLIGET-DSSGTTVRFWPSGLTFSHGECRTIFNVEILARRLRELSFLNAGVRIV 119

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWNDG 268
           L D+R     E    Y+GG+  FV Y     K  +           + I +++A++WN  
Sbjct: 120 LRDERI--NLEHVYDYEGGLSEFVKYFINEGKTHLNEIFHFTADTENGIGVEVALQWN-- 175

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
                    NNIPQKDGGTHL+G R+ALTR +  Y+E     KK+K +V GDD REG T+
Sbjct: 176 ---------NNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTA 226

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N   SA+L E+P  AK I  K++DA+  
Sbjct: 227 IISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARA 286

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD 416
           RDAAR+AR++TRRK  LDIA LPGKLAD
Sbjct: 287 RDAARKAREMTRRKSALDIAGLPGKLAD 314


>gi|188090386|gb|ACD49427.1| gyrase subunit B [Xanthomonas cassavae]
          Length = 287

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 140/287 (48%), Gaps = 7/287 (2%)

Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555
           RYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD
Sbjct: 1   RYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKD 60

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           + +L  YL + ++   + +    +  I+   L   +      +  I      +D   +  
Sbjct: 61  DAALNAYLASSAVEGAVLIPAADEPPITGEALEKLLLLFAGANDAIARNAHRYDPALLTA 120

Query: 616 AVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRIA 668
            +     +      E D   ++     + NR      + +  +  + +N  + ++  R  
Sbjct: 121 LIDLPPLDVAQLQAEGDVHPSLDALQAVLNRGTLGTARYQLRFDPATDNTAATLVAIRRH 180

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            G +   VL   +  S   +  R  +  +         ++       IT        +  
Sbjct: 181 MGEEFTQVLPMGAFESGELRPLREVALALHGLVREGAQIVRGNKSHPITSFGQAQAWLLE 240

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
             +KG  +QR+KGLGEMNA QLWETT+NP+TR  L+ +I +A  AD 
Sbjct: 241 EAKKGRQVQRFKGLGEMNAEQLWETTVNPETRRPLQGRIEEAVAADQ 287


>gi|239914511|dbj|BAH78934.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914519|dbj|BAH78938.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914569|dbj|BAH78963.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914579|dbj|BAH78968.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914581|dbj|BAH78969.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914583|dbj|BAH78970.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914585|dbj|BAH78971.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914587|dbj|BAH78972.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914593|dbj|BAH78975.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914595|dbj|BAH78976.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 318

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 157/320 (49%), Positives = 215/320 (67%), Gaps = 20/320 (6%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------- 155
            SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F  GI                 
Sbjct: 1   NSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEPAEAPDGKTV 60

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             +PL V+G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+R
Sbjct: 61  EVSPLRVSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQR 119

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           S +       + GG++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VL
Sbjct: 120 SGKE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVL 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+
Sbjct: 178 CFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKV 237

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+
Sbjct: 238 PEPKFSSQTKDKLVSSEVRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAREAARK 297

Query: 395 ARDLTRRKGVLDIASLPGKL 414
           AR++TRRKGVLD   LPGKL
Sbjct: 298 AREMTRRKGVLDGMGLPGKL 317


>gi|164456613|dbj|BAF97799.1| gyrase B subunit [Photobacterium frigidiphilum]
          Length = 272

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 142/274 (51%), Positives = 196/274 (71%), Gaps = 4/274 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  ++L I R+G+I++ S+ +G+ D PL V G   + TGT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGDT-DKTGTRLRFW 59

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS + F+   +F Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI AFV +
Sbjct: 60  PSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGIRAFVEH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+DGGTHL+G R 
Sbjct: 119 LNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 179 ALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKT 238

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            VES +N+  + +L E P +AKII  K++DAS  
Sbjct: 239 AVESAMNEKFAEFLLESPADAKIICGKIIDASRA 272


>gi|307343798|emb|CBJ19504.1| gyrase B subunit [Micromonospora sp. GUI8]
          Length = 358

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 155/360 (43%), Positives = 230/360 (63%), Gaps = 8/360 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + N    +PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGSVWRQHYTNSKP-SPLEK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFE 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D   
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDDFDM 358


>gi|188090388|gb|ACD49428.1| gyrase subunit B [Xanthomonas cassavae]
          Length = 288

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+K
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLK 60

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
           D+ +L  YL + ++   + +    +  I+   L   +      +  I      +D   + 
Sbjct: 61  DDAALNAYLASSAVEGAVLIPAADEPPITGEALEKLLLLFAGANDAIARNAHRYDPALLT 120

Query: 615 QAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRI 667
             +     +      E D   ++     + NR      + +  +  + +N  + ++  R 
Sbjct: 121 ALIDLPPLDVAQLQAEGDVHPSLDALQAVLNRGTLGTARYQLRFDPATDNTAATLVAIRR 180

Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727
             G +   VL   +  S   +  R  +  +         ++       IT        + 
Sbjct: 181 HMGEEFTQVLPMGAFESGELRPLREVALALHGLVREGAQIVRGNKSHPITSFGQAQAWLL 240

Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +KG  +QR+KGLGEMNA QLWETT+NPDTR  L+ +I +A  AD 
Sbjct: 241 EEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRPLQGRIEEAVAADQ 288


>gi|115381644|gb|ABI96504.1| gyrase B [Salmonella enterica subsp. enterica serovar Java]
          Length = 323

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 194/326 (59%), Positives = 249/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+N AILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|307343774|emb|CBJ19492.1| gyrase B subunit [Micromonospora endolithica]
          Length = 364

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 160/365 (43%), Positives = 233/365 (63%), Gaps = 9/365 (2%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G  +   + +     PL   G   + TG+ V+F P  D+F   +F++ T+  RL+E++FL
Sbjct: 4   GFFWRQQYHHSKP-TPLEK-GEPTDRTGSAVSFWPDPDVFETVEFDFQTIYRRLQEMAFL 61

Query: 203 NSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
              + I L+D+R       + RE+T  Y+GGI  FV +L+  K P+ ++ +      + +
Sbjct: 62  TRGLTIHLLDERVPEGEEGKIREVTFHYEGGIADFVRHLNASKTPMHKTVVEFGAEEEGM 121

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
           S+++AM+WN+ Y E+V  F NNI   +GGTH  G R+ALT  +  Y        K    +
Sbjct: 122 SLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGA-EKKLLKGDEKL 180

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  WL+ +P EAKI
Sbjct: 181 SGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWLDRNPAEAKI 240

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDSAGG
Sbjct: 241 IITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGG 300

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           SAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D FD+ KLRY
Sbjct: 301 SAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI-HDDFDMEKLRY 359

Query: 498 HKIII 502
           HK+++
Sbjct: 360 HKMLL 364


>gi|197295800|gb|ACH58603.1| topoisomerase [Methylobacterium aminovorans]
          Length = 385

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 141/388 (36%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG+SVVNALS  L++ + R   +Y  +F  G     L   G   N  GT V F 
Sbjct: 1   SGGLHGVGISVVNALSDVLEVEVARNQTLYRQTFSRGHAQGSLETVGRVQNRRGTRVRFH 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIE 230
           P + IF    F+   L    R  ++L   V+I               P E    + GG+ 
Sbjct: 61  PDAQIFGSLKFDPRRLFKMARSKAYLFGGVEIRWRCAPALLEGLDDVPAEAVHRFPGGLS 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
            +++     K+ ++ S    + ++   + S++ A+ W          + N IP  +GGTH
Sbjct: 121 DYLARDIEGKELVLDSIFSGKITKPGSHGSLEWAVAWTVADDGVSHSYCNTIPTPEGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
            SGLR AL R +  + E+   +K+   +V  DD      S+LS+ + +P F  QTK+KL 
Sbjct: 181 ESGLRVALLRALREHAERVNQAKRM-TAVTTDDVMATCASMLSVFIREPEFQGQTKDKLA 239

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           + E   +VE+ V D    WL   P +A  ++  V+D +  R   R+ ++   RK      
Sbjct: 240 TVEASRIVETAVRDAFDHWLAASPAQANKLLDWVIDRAEERLRRRQEKE-VARKSATRKL 298

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
            LPGKLADCS      SE+F+VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  DK+
Sbjct: 299 RLPGKLADCSAAGTAGSEIFIVEGDSAGGSAKQARDRATQAVLPLRGKILNVASASRDKL 358

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLR 496
            ++Q I  L  ALG G G + F    LR
Sbjct: 359 GANQLISDLTLALGCGTGAN-FREGDLR 385


>gi|115381472|gb|ABI96418.1| gyrase B [Salmonella enterica subsp. enterica serovar Chester]
          Length = 323

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNQNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|321117360|dbj|BAJ72157.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 180/336 (53%), Positives = 242/336 (72%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGFSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKXQAIPPLKGKILNVEKTRFDKMLASPEG 333


>gi|308522562|dbj|BAJ22894.1| gyrase B subunit [Vibrio sagamiensis]
          Length = 265

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 138/265 (52%), Positives = 190/265 (71%), Gaps = 3/265 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DQTGTQIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ FS  +F+YD L  RLRELSFLNS + I LID+R  +       Y+GGI+AFV +L
Sbjct: 60  PSAETFSQTEFHYDILAKRLRELSFLNSGISIRLIDEREADKS-DHYMYEGGIQAFVEHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           + +K P++         R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 119 NTNKTPIIDKIFHFNFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 LTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVK 380
           VES + + LS +L E+P EAK++  
Sbjct: 239 VESAMGEKLSEFLIENPTEAKMVCS 263


>gi|304415658|gb|ADM30935.1| gyrase B subunit [Vibrio areninigrae]
          Length = 265

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 141/265 (53%), Positives = 192/265 (72%), Gaps = 3/265 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  + L I+R G+I+  ++ +G+   PL V G     +GT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVVLTIQRGGHIHTQTYRHGVPQEPLKVVGDTE-KSGTTVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + F+  +F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI+AFV++L
Sbjct: 60  PSDETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKNDHFMYEGGIQAFVTHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        R++ IS+++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R+A
Sbjct: 119 NRNKTPIHEKVFHFNSEREDGISVEVAMQWNDGFQEGIFCFTNNIPQRDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + S+++K   SKK+K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 LTRTLNSFMDKEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVK 380
           VES + + L+ +L EHP EAKI+  
Sbjct: 239 VESAMGEKLNEFLAEHPTEAKIVCN 263


>gi|164456625|dbj|BAF97805.1| gyrase B subunit [Photobacterium phosphoreum]
          Length = 282

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 133/259 (51%), Positives = 186/259 (71%), Gaps = 4/259 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  ++L I R G+IY+ ++ +G+   PL   G + + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGDS-DKTGT 59

Query: 172 EVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
            + F PS + F+   +F+Y+ L  RLRELSFLNS + I LID+R  E ++    Y+GGI 
Sbjct: 60  RLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDER-EEGKQDHFTYEGGIR 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+DGGTHL
Sbjct: 119 AFVEHLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + ++++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDGLSAWL 368
           SEV++ VES +N+  + +L
Sbjct: 239 SEVKTAVESAMNEKFAEFL 257


>gi|239914503|dbj|BAH78930.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914505|dbj|BAH78931.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914507|dbj|BAH78932.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914509|dbj|BAH78933.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914527|dbj|BAH78942.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 318

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 157/320 (49%), Positives = 215/320 (67%), Gaps = 20/320 (6%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------- 155
            SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F  GI                 
Sbjct: 1   NSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEPAEAPDGKTV 60

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             +PL V+G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+R
Sbjct: 61  EVSPLRVSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQR 119

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           S +       + GG++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VL
Sbjct: 120 SGKE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVL 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+
Sbjct: 178 CFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKV 237

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+
Sbjct: 238 PEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARK 297

Query: 395 ARDLTRRKGVLDIASLPGKL 414
           AR++TRRKGVLD   LPGKL
Sbjct: 298 AREMTRRKGVLDGMGLPGKL 317


>gi|115381470|gb|ABI96417.1| gyrase B [Salmonella enterica subsp. enterica serovar Kedougou]
          Length = 323

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 250/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL ++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLKQNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381562|gb|ABI96463.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|115381566|gb|ABI96465.1| gyrase B [Salmonella enterica subsp. enterica serovar Java]
          Length = 323

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 195/326 (59%), Positives = 250/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|58415308|emb|CAH04912.1| DNA gyrase subunit B [Leifsonia xyli subsp. cynodontis]
          Length = 351

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 145/352 (41%), Positives = 214/352 (60%), Gaps = 17/352 (4%)

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           S+ NG+   PL   G     TGT + F PS + F   +F+YDTL+ R ++++FLN  ++I
Sbjct: 1   SYRNGVPQAPLEQ-GEETEATGTTIVFWPSPETFETVEFDYDTLRTRFQQMAFLNKGLRI 59

Query: 209 SLIDKRSP------------EPREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGSR 254
           ++ D+R+             EPR     Y+ G+  +V YL+  KK        I  +   
Sbjct: 60  AITDQRTALGSLEGQVDEESEPRGEVFLYEKGLTDYVHYLNAAKKAEVVHDEIISFELED 119

Query: 255 --DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
               I++++AM+W   Y+E+V  + N I   +GGTH  G R+ALT  +  Y  +    K 
Sbjct: 120 TDRKIALEVAMQWTTSYNESVFTYANTINTHEGGTHEEGFRAALTTLVNRYAREKNILKD 179

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
              ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E ++ V+  V D L+ W + +P
Sbjct: 180 KDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQKVVGDQLADWFDRNP 239

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            +AK I++K L A+  R  AR+AR+  RRKG+L+   +PGKL DC  +DP  SE+F+VEG
Sbjct: 240 NQAKEIIRKALQAATARIVARKARETARRKGLLESGGMPGKLKDCQSKDPTLSEIFIVEG 299

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           DSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L++ E+  +ITA G G
Sbjct: 300 DSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALANNEVQAMITAFGAG 351


>gi|219687725|dbj|BAH09373.1| gyrase B subunit [Vibrio azureus]
          Length = 265

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 136/265 (51%), Positives = 190/265 (71%), Gaps = 3/265 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DQTGTQIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  +F+YD L  RLRELSFLNS V I LID+R  +       ++GGI+AFV +L
Sbjct: 60  PSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDEREVDKS-DHFMFEGGIQAFVDHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           + +K P++         R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 119 NTNKTPIIDKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 LTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVK 380
           VES + + LS +L E+P EAK++  
Sbjct: 239 VESAMGEKLSEFLIENPTEAKMVCS 263


>gi|307343822|emb|CBJ19516.1| gyrase B subunit [Micromonospora sp. GUI41]
          Length = 355

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 152/354 (42%), Positives = 228/354 (64%), Gaps = 8/354 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + +     PL   G   + TG+ V+F P  D+F   +F++ T+  RL
Sbjct: 2   VEIHKSGSVWRQHYTHSKP-GPLEK-GETTDRTGSAVSFWPDPDVFETVEFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFE 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 352


>gi|321117362|dbj|BAJ72158.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 180/336 (53%), Positives = 242/336 (72%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASPEG 333


>gi|186898209|gb|ACC93992.1| DNA gyrase B subunit [Acinetobacter soli]
          Length = 309

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 171/311 (54%), Positives = 214/311 (68%), Gaps = 3/311 (0%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALSS L+L I R G I+E  + +G    PL V       TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPKYPLKVV-GETTTTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
            V F PS++ FS   F+ D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  
Sbjct: 60  TVRFWPSAETFSQTIFSVDILARRLRELSFLNAGVKIVLRDERV--NFEHIYAYEGGLSE 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y++  K  L         + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G
Sbjct: 118 FVKYINEGKTHLNDIFHFTADADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + SY+E     KK+K SV GDD REG T+++S+K+PDP+FSSQTKEKLVSSE
Sbjct: 178 FRAALTRGLNSYLESENILKKEKVSVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSE 237

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           V+  VE  +N   SA+L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LP
Sbjct: 238 VKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLP 297

Query: 412 GKLADCSERDP 422
           GKLADC E+DP
Sbjct: 298 GKLADCQEKDP 308


>gi|321117364|dbj|BAJ72159.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 181/336 (53%), Positives = 243/336 (72%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGFSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AARRAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAARRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASPEG 333


>gi|164456719|dbj|BAF97852.1| gyrase B subunit [Vibrio pomeroyi]
          Length = 246

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 135/248 (54%), Positives = 177/248 (71%), Gaps = 3/248 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G I+  ++ +G    PL   G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAAIGDT-DKT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GTE+ F PS D FS   F+YD L  RLRELSFLNS V I LID+R  E +     ++GGI
Sbjct: 60  GTEIRFWPSEDTFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P++Q        R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVDHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLV
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 238

Query: 349 SSEVRSVV 356
           SSEV+S V
Sbjct: 239 SSEVKSAV 246


>gi|115381404|gb|ABI96384.1| gyrase B [Salmonella enterica subsp. houtenae]
 gi|115381406|gb|ABI96385.1| gyrase B [Salmonella enterica subsp. enterica serovar Kedougou]
 gi|115381408|gb|ABI96386.1| gyrase B [Salmonella enterica subsp. enterica serovar Kedougou]
 gi|115381410|gb|ABI96387.1| gyrase B [Salmonella enterica subsp. enterica serovar Kedougou]
 gi|115381412|gb|ABI96388.1| gyrase B [Salmonella enterica subsp. enterica serovar Muenchen]
 gi|115381414|gb|ABI96389.1| gyrase B [Salmonella enterica subsp. enterica serovar Muenchen]
 gi|115381418|gb|ABI96391.1| gyrase B [Salmonella enterica subsp. enterica serovar Zanzibar]
 gi|115381420|gb|ABI96392.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|115381422|gb|ABI96393.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|115381424|gb|ABI96394.1| gyrase B [Salmonella enterica subsp. enterica serovar Blockley]
 gi|115381426|gb|ABI96395.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|115381428|gb|ABI96396.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
 gi|115381430|gb|ABI96397.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381432|gb|ABI96398.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381434|gb|ABI96399.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381436|gb|ABI96400.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
 gi|115381438|gb|ABI96401.1| gyrase B [Salmonella enterica subsp. enterica serovar Blockley]
 gi|115381440|gb|ABI96402.1| gyrase B [Salmonella enterica subsp. enterica serovar Blockley]
 gi|115381442|gb|ABI96403.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|115381444|gb|ABI96404.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|115381446|gb|ABI96405.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|115381448|gb|ABI96406.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|115381450|gb|ABI96407.1| gyrase B [Salmonella enterica subsp. enterica serovar Infantis]
 gi|115381452|gb|ABI96408.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|115381454|gb|ABI96409.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|115381456|gb|ABI96410.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|115381460|gb|ABI96412.1| gyrase B [Salmonella enterica subsp. enterica serovar Heidelberg]
 gi|115381468|gb|ABI96416.1| gyrase B [Salmonella enterica subsp. enterica serovar Blockley]
 gi|115381480|gb|ABI96422.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381482|gb|ABI96423.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381484|gb|ABI96424.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381486|gb|ABI96425.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381488|gb|ABI96426.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381490|gb|ABI96427.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381492|gb|ABI96428.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381494|gb|ABI96429.1| gyrase B [Salmonella enterica subsp. enterica serovar Blockley]
 gi|115381496|gb|ABI96430.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|115381498|gb|ABI96431.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|115381500|gb|ABI96432.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|115381502|gb|ABI96433.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
 gi|115381506|gb|ABI96435.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
 gi|115381508|gb|ABI96436.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|115381510|gb|ABI96437.1| gyrase B [Salmonella enterica subsp. enterica serovar Goldcoast]
 gi|115381512|gb|ABI96438.1| gyrase B [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|115381516|gb|ABI96440.1| gyrase B [Salmonella enterica subsp. enterica serovar Panama]
 gi|115381520|gb|ABI96442.1| gyrase B [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|115381522|gb|ABI96443.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381524|gb|ABI96444.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
 gi|115381528|gb|ABI96446.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381530|gb|ABI96447.1| gyrase B [Salmonella enterica subsp. enterica serovar Coeln]
 gi|115381532|gb|ABI96448.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381534|gb|ABI96449.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381536|gb|ABI96450.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381540|gb|ABI96452.1| gyrase B [Salmonella enterica subsp. enterica serovar Panama]
 gi|115381542|gb|ABI96453.1| gyrase B [Salmonella enterica subsp. enterica serovar Panama]
 gi|115381544|gb|ABI96454.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
 gi|115381546|gb|ABI96455.1| gyrase B [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|115381548|gb|ABI96456.1| gyrase B [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|115381552|gb|ABI96458.1| gyrase B [Salmonella enterica subsp. enterica serovar Goldcoast]
 gi|115381560|gb|ABI96462.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|115381564|gb|ABI96464.1| gyrase B [Salmonella enterica subsp. enterica serovar Java]
 gi|115381570|gb|ABI96467.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|115381572|gb|ABI96468.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|115381584|gb|ABI96474.1| gyrase B [Salmonella enterica subsp. enterica serovar Pullorum]
 gi|115381586|gb|ABI96475.1| gyrase B [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|115381588|gb|ABI96476.1| gyrase B [Salmonella enterica subsp. enterica serovar Stanley]
 gi|115381590|gb|ABI96477.1| gyrase B [Salmonella enterica subsp. enterica serovar Agama]
 gi|115381592|gb|ABI96478.1| gyrase B [Salmonella enterica subsp. enterica serovar Agama]
 gi|115381594|gb|ABI96479.1| gyrase B [Salmonella enterica subsp. enterica serovar Reading]
 gi|115381596|gb|ABI96480.1| gyrase B [Salmonella enterica subsp. enterica serovar Reading]
 gi|115381598|gb|ABI96481.1| gyrase B [Salmonella enterica subsp. enterica serovar Binza]
 gi|115381600|gb|ABI96482.1| gyrase B [Salmonella enterica subsp. enterica serovar Binza]
 gi|115381602|gb|ABI96483.1| gyrase B [Salmonella enterica subsp. enterica serovar Orion]
 gi|115381604|gb|ABI96484.1| gyrase B [Salmonella enterica subsp. enterica serovar Orion]
 gi|115381606|gb|ABI96485.1| gyrase B [Salmonella enterica subsp. enterica serovar Give]
 gi|115381608|gb|ABI96486.1| gyrase B [Salmonella enterica subsp. enterica serovar Give]
 gi|115381610|gb|ABI96487.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381612|gb|ABI96488.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381614|gb|ABI96489.1| gyrase B [Salmonella enterica subsp. enterica serovar Rissen]
 gi|115381616|gb|ABI96490.1| gyrase B [Salmonella enterica subsp. enterica serovar Rissen]
 gi|115381618|gb|ABI96491.1| gyrase B [Salmonella enterica subsp. enterica serovar Fischerkietz]
 gi|115381620|gb|ABI96492.1| gyrase B [Salmonella enterica subsp. enterica serovar Coeln]
 gi|115381622|gb|ABI96493.1| gyrase B [Salmonella enterica subsp. enterica serovar Haifa]
 gi|115381626|gb|ABI96495.1| gyrase B [Salmonella enterica subsp. enterica serovar Rostock]
 gi|115381628|gb|ABI96496.1| gyrase B [Salmonella enterica subsp. enterica serovar Moscow]
 gi|115381630|gb|ABI96497.1| gyrase B [Salmonella enterica subsp. enterica serovar Naestved]
 gi|115381632|gb|ABI96498.1| gyrase B [Salmonella enterica subsp. enterica serovar Indiana]
 gi|115381634|gb|ABI96499.1| gyrase B [Salmonella enterica subsp. enterica serovar Indiana]
 gi|115381636|gb|ABI96500.1| gyrase B [Salmonella enterica subsp. enterica serovar Kentucky]
 gi|115381638|gb|ABI96501.1| gyrase B [Salmonella enterica subsp. enterica serovar Kentucky]
 gi|115381640|gb|ABI96502.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Bovismorbificans]
          Length = 323

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381416|gb|ABI96390.1| gyrase B [Salmonella enterica subsp. enterica serovar Muenchen]
          Length = 323

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARGREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|307343872|emb|CBJ19541.1| gyrase B subunit [Micromonospora sp. SR4]
          Length = 354

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 153/354 (43%), Positives = 224/354 (63%), Gaps = 8/354 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I ++G ++   +      +PL   G   + TG+ V F P  D+F   DF++ T+  RL
Sbjct: 1   VEIHKDGFVWRQQYTASKP-SPLDK-GETTDRTGSAVAFWPDPDVFETVDFDFQTIYRRL 58

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN  + I L+D+R  E      RE+T  YKGGI  FV +L+  K P+ ++ +   
Sbjct: 59  QEMAFLNRGLTIHLLDERVAEEENGRQREVTFCYKGGIADFVRHLNASKTPIHKTVVEFA 118

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
           G  + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        
Sbjct: 119 GEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSLVNKYGA-EKKLL 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +
Sbjct: 178 KSDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 238 PAEAKVIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 298 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 351


>gi|1944017|dbj|BAA19520.1| subunit B protein of DNA gyrase [Comamonas testosteroni]
          Length = 330

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 164/332 (49%), Positives = 218/332 (65%), Gaps = 26/332 (7%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------- 155
           GGKF+Q SYKVSGGLHGVGVS VNALS WLKL + R+G  +E+ F  G +          
Sbjct: 1   GGKFDQNSYKVSGGLHGVGVSCVNALSIWLKLTVSRDGVRHEIDFSRGFVQNRLIEVVDG 60

Query: 156 --DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLID 212
              +P+ V G + +  GT+V FLP  +IF     F Y+ L  RLRELSFLN+ V+I L D
Sbjct: 61  TEVSPMRVVGPS-DKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKD 119

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLA 262
           +R  +         GG++ FV +++  KK L  +    +G+R            I +++A
Sbjct: 120 ERDGKE--DDFSGAGGVKGFVEFINGTKKVLHPTTFYAEGTRPAETYGGIPGTEIGVEVA 177

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K  V GDD 
Sbjct: 178 MQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNELAKKAKVEVTGDDM 237

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG   VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AKI+  K+
Sbjct: 238 REGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGKLLAEFLEEKPNDAKILCNKI 297

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           ++A+  R+AAR+AR++TRRKGVLD   LPGKL
Sbjct: 298 VEAARAREAARKAREMTRRKGVLDGMGLPGKL 329


>gi|11078719|dbj|BAB17364.1| DNA gyrase subunit B [Pseudomonas balearica]
          Length = 296

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 157/299 (52%), Positives = 213/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G     TGTE+ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTIRREGKVWEQIYRHGVPQAPLTAMGETE-GTGTEIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFVSYL+
Sbjct: 60  SAETFKNIHFSWDILAKRLRELSFLNSGVGILLRDERTAKE--ELFKYEGGLSAFVSYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 TNKSAINQVFHFNVQREDGVGVEIALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|115381504|gb|ABI96434.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
          Length = 323

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DPFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381526|gb|ABI96445.1| gyrase B [Salmonella enterica subsp. enterica serovar Coeln]
          Length = 323

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSPETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|219687723|dbj|BAH09372.1| gyrase B subunit [Vibrio azureus]
          Length = 265

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 135/265 (50%), Positives = 190/265 (71%), Gaps = 3/265 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DQTGTQIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L
Sbjct: 60  PSAETFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVDHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           + +K P++         R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 119 NTNKTPIIDKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 LTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVK 380
           VES + + LS +L E+P EAK++  
Sbjct: 239 VESAMGEKLSEFLIENPTEAKMVCS 263


>gi|115381514|gb|ABI96439.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Bovismorbificans]
          Length = 323

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 195/326 (59%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV +L+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEFLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|321117366|dbj|BAJ72160.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 180/336 (53%), Positives = 242/336 (72%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGFSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASXEG 333


>gi|197295760|gb|ACH58590.1| gyrase subunit B [Methylobacterium nodulans ORS 2060]
          Length = 321

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 214/320 (66%), Positives = 262/320 (81%)

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + FS+ +F+Y TL+ RLREL+FLNS V+I L D R  E +   + Y+GG+EAFV YLDR
Sbjct: 1   PETFSMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELVYEGGVEAFVRYLDR 60

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL+  P+ ++  RD I +++A+ WND YHE VL FTNNIPQ+DGGTH++G R+ALTR
Sbjct: 61  TKTPLVAKPVVVRAERDGIGVEVALWWNDSYHETVLPFTNNIPQRDGGTHMAGFRAALTR 120

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
           QIT Y E S  +KK+K ++ GDDCREG T+++S+K+PDP+FSSQTK+KLVSSEVR VVE+
Sbjct: 121 QITGYAESSGIAKKEKVTLSGDDCREGLTAIISVKVPDPKFSSQTKDKLVSSEVRPVVEN 180

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            +N+GLS WLEEHP EAK IV KV +A+  R+AAR+AR+LTRRKG LDIASLPGKLADC 
Sbjct: 181 VLNEGLSNWLEEHPSEAKTIVGKVAEAAAAREAARKARELTRRKGALDIASLPGKLADCQ 240

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
           ERDP K E+ LVEGDSAGGSAKQGR R  QA+LPLRGKILNVERARFDKMLSSQEIGTLI
Sbjct: 241 ERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKMLSSQEIGTLI 300

Query: 479 TALGTGIGQDSFDINKLRYH 498
           TALGTGIG++ F+ +KLRYH
Sbjct: 301 TALGTGIGREEFNPDKLRYH 320


>gi|209407302|emb|CAP72536.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 300

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 158/301 (52%), Positives = 214/301 (71%), Gaps = 3/301 (0%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GTE+ F P
Sbjct: 3   GGLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTEIHFKP 61

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFVSYL+
Sbjct: 62  SAETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERSAKE--ELFKYEGGLSAFVSYLN 119

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 120 TNKTAVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALT 179

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 180 RNLNAYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 239

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD 
Sbjct: 240 QEMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADP 299

Query: 418 S 418
            
Sbjct: 300 P 300


>gi|307343854|emb|CBJ19532.1| gyrase B subunit [Micromonospora sp. SGA3]
          Length = 358

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 152/354 (42%), Positives = 223/354 (62%), Gaps = 8/354 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I R+G ++   + +     PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHRDGFVWRQQYNHSKP-TPLEK-GEETDRTGSAVSFWPDPDVFETVDFDFHTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FL   + I L+D+R       + RE+T  Y+GGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKSPIHKTVVEFG 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
                +S+++AM+WN+ Y E+V  F NNI   +GGTH  G R+ALT  +  Y        
Sbjct: 120 AEETGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGA-EKKLL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ DP+F  QTK KL ++ V+  V+   N+ L  W + +
Sbjct: 179 KGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRVCNESLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAKII++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 299 GDSAGGSAKQGRDPRVQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 352


>gi|11078751|dbj|BAB17380.1| DNA gyrase subunit B [Pseudomonas straminea]
 gi|11078811|dbj|BAB17410.1| DNA gyrase subunit B [Pseudomonas fulva]
          Length = 296

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 157/299 (52%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAAVGDT-DGTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S D F+   F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV YL+
Sbjct: 60  SEDTFANIHFSWDILAKRLRELSFLNSGVGILLKDERTAKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 VNKTAVNQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|120406839|ref|YP_956668.1| DNA topoisomerase [Mycobacterium vanbaalenii PYR-1]
 gi|119959657|gb|ABM16662.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 677

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 141/687 (20%), Positives = 254/687 (36%), Gaps = 60/687 (8%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYA-DIITV 66
           SY+A  I  L  +   + RP++ +G     + L     E++DNAI+E +   +    +T+
Sbjct: 2   SYNAADITELDDVQHTRLRPAVNLGLDVLNTALR----ELVDNAIEEVADPSHGGSTVTI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS--GGLHGVG 124
           TL+ DGS +V+D+GRG+P D     G +     +    AGGKF+  +   S   GL+G+G
Sbjct: 58  TLHADGSVSVADDGRGLPVDSDPVTGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGIG 117

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------DNPLVVTGS-A 165
            +    +S+   + ++R G  Y  SF  G                       L  +G+  
Sbjct: 118 AAAAVFISARTDVTVRRAGKTYLQSFGGGYPGVFEGRDFDPNAPFTRADTQKLRGSGNRK 177

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----- 220
            +  GT V  L  + +      +   +  R    + ++  V + ++D+  P         
Sbjct: 178 PDAHGTTVRILFDAAVVPDSTIDVGEVLLRAHAAARMSPGVHLVVVDEGWPGEEIPPALL 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRI---QGS----RDNISIDLAMRWNDGYHENV 273
                  G +  +  +       +     +   +G     R       ++         V
Sbjct: 238 EPFSGPWGTDTLLDLMCTAAGTPLPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPATV 297

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK--RSVIGDDCREGFTSVLS 331
             F N +    GG+HL+     L+  +     +       K        D        + 
Sbjct: 298 AAFCNTVRTPGGGSHLTAAVKGLSEALADRASRIRDLGLAKGEDGPEPQDFAAVTALAVD 357

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV--LDASMVR 389
            + PD  + SQ K  + S  +   +   V   ++ W         + +     L+A+  R
Sbjct: 358 TRAPDVAWDSQAKTAVSSRSLNLAMAPDVARSVTIWAANPANNDAVSLWTKLALEAARAR 417

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADC-----SERDPKKSELFLVEGDSAGGSAKQGRS 444
            +A  A+  +R             L               +ELFL EGDSA G+ K  R 
Sbjct: 418 RSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAARD 477

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
              QA  PL+GK  NV      K     E  ++   LG G+ +D  D    RY +I+  +
Sbjct: 478 ATFQAAFPLKGKPPNVYGFALSKARVKDEFDSIERILGCGV-RDHCDPELCRYDRILFAS 536

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DAD DG +I + L++ F      L+  G +Y+  PPL+ +  G    Y +DE   +  + 
Sbjct: 537 DADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKNGDERIYCQDESERDAAVA 596

Query: 565 NQS---LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
                             G +  +D    + D  +  + +   +P+  +  +   +  G 
Sbjct: 597 QLKATSKKRVEVQRNKGLGEMDADDFWTTVLDPQR--RTVIRVHPDDGEKKLHHTLFGG- 653

Query: 622 FNCESDQEINVSLASKLANRLNFIAEK 648
                  E   +  + +A+R++  A  
Sbjct: 654 -----PPEGRRTWMADVASRIDTSALD 675



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-DKIKITGPCS---LLDTIFSIGRK 732
           +  S I  F   Y+ +    +    L  L ++ NG ++I           +  + +  +K
Sbjct: 545 INSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKNGDERIYCQDESERDAAVAQLKATSKK 604

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF- 791
            + +QR KGLGEM+A   W T L+P  R+++RV   D  +   L   L G   E RR + 
Sbjct: 605 RVEVQRNKGLGEMDADDFWTTVLDPQRRTVIRVHPDDGEK--KLHHTLFGGPPEGRRTWM 662

Query: 792 ------IQENSLP 798
                 I  ++L 
Sbjct: 663 ADVASRIDTSALD 675


>gi|115381646|gb|ABI96505.1| gyrase B [Salmonella enterica subsp. enterica serovar Indiana]
          Length = 323

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 193/326 (59%), Positives = 247/326 (75%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+N AILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE +RFDKMLSSQE  TLITALG 
Sbjct: 298 LNVENSRFDKMLSSQEGATLITALGC 323


>gi|324962670|gb|ADY62437.1| gyrase subunit B [Frankia sp. NRRLB-16322]
          Length = 264

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 108/265 (40%), Positives = 148/265 (55%), Gaps = 9/265 (3%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ +SY VSGGLHGVGVS
Sbjct: 1   TLVADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+ +   + N     PL  T      TGT +TF     IF    
Sbjct: 61  VVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQT-GTSKKTGTTITFWADPTIFETTT 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSP--------EPREITMFYKGGIEAFVSYLDR 238
           + Y+TL  RL+E++FLN  + I+L D+R          EP E+T  Y  G+  FV +L+ 
Sbjct: 120 YKYETLFRRLQEMAFLNKGLSITLRDERGKATETEEAAEPTEVTFKYDNGLVDFVGHLNA 179

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K  + +S I ++     I  +LAM+WN GY+E+V  F N I   +GGTH  G R+ALT 
Sbjct: 180 TKDAVHRSVISLESKGIGIEAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTS 239

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCR 323
            + +Y +     K  K      D R
Sbjct: 240 AVNAYAKDQNLLKPFKAGSKNSDER 264


>gi|328497273|dbj|BAK18800.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 278

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 7/278 (2%)

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           +MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  
Sbjct: 1   LMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNA 60

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           YL + ++     +    +  I+   L   +      ++ I      +D   +   +    
Sbjct: 61  YLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPP 120

Query: 622 FNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQ 674
            + +  Q              + NR      + +  +  + +  ++ ++  R   G +  
Sbjct: 121 LDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFT 180

Query: 675 FVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI 734
            VL   +  S   +  R  S  + +       ++       IT        +    ++G 
Sbjct: 181 QVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGR 240

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
            +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  
Sbjct: 241 QVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVA 278


>gi|321117352|dbj|BAJ72153.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 180/336 (53%), Positives = 242/336 (72%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGXSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKKQAIPPLKGKILNVEKXRFDKMLASPEG 333


>gi|115381558|gb|ABI96461.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 323

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 250/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I I++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|218139455|gb|ACK57885.1| GyrB [Actinobaculum schaalii]
          Length = 375

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 154/375 (41%), Positives = 227/375 (60%), Gaps = 25/375 (6%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+ ++  +KR+G ++ +++ NG+     +  G    +TGT  TF  + DI
Sbjct: 1   GVGVSVVNALSTRMETIVKRDGYVWRIAYENGVP-TRELERGEETTETGTTQTFWANPDI 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------SPEPREI 221
           F   D++++TL+ R  +++FLN +++I+LID+R                     P  RE+
Sbjct: 60  FETTDYDFETLRKRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGEAAAEVPAKREV 119

Query: 222 TMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFT 277
           +  Y GG+  +V +L+  KK        I  +       I +++AM+W   Y E+V  F 
Sbjct: 120 SYCYSGGLLDYVKFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFA 179

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           N I   +GG H  G RSALT  I  Y  +    K    ++ GDD REG T+V+S+K+ +P
Sbjct: 180 NTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTAVISVKLGNP 239

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL ++E R+ V+  +   L+ WL+ HP +AK I++K   A   R AAR+AR+
Sbjct: 240 QFEGQTKTKLGNTEARTFVQQQMYTQLNDWLDSHPADAKEIIRKGTQAFAARAAARKARE 299

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
            TRRK VL+ AS+PGKL DC+   P++ E+F+VEGDSAGGSA  GR  E+QAI+P+RGKI
Sbjct: 300 ATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKI 359

Query: 458 LNVERARFDKMLSSQ 472
           LNVE+AR D+ LSS 
Sbjct: 360 LNVEKARLDRALSSD 374


>gi|11078725|dbj|BAB17367.1| DNA gyrase subunit B [Pseudomonas pseudoalcaligenes]
          Length = 296

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F++D L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV YL+
Sbjct: 60  SEETFANIHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 TNKTVVNQVFHFSVQREDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RHLNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|115381518|gb|ABI96441.1| gyrase B [Salmonella enterica subsp. enterica serovar Chester]
          Length = 323

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSD-IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS +   +V +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHENFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381458|gb|ABI96411.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 323

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSASGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|10121861|gb|AAG13403.1|AF285157_1 topoisomerase II alpha-2 [Homo sapiens]
          Length = 526

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 100/529 (18%), Positives = 188/529 (35%), Gaps = 77/529 (14%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    RE   +++ 
Sbjct: 133 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ 192

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 193 TWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 252

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 253 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTM 303

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           ++   + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +  
Sbjct: 304 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNH 359

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSS-----EVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
               ++  + +P F SQTKE +            + E F+   L +     P    +I  
Sbjct: 360 MWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAHLYSRFLIDPFFPNMIPN 419

Query: 381 KVLDASMV-----------------RDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
            +   S                          +    +   +          D   R+  
Sbjct: 420 MIFSFSKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDANDAGGRNST 479

Query: 424 KSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           +  L L EGDSA      G    GR +    + PLRGKILNV  A   +
Sbjct: 480 ECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQ 526


>gi|11078897|dbj|BAB17453.1| DNA gyrase subunit B [Pseudomonas putida]
          Length = 296

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+
Sbjct: 60  SAETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|332847785|ref|XP_003315524.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha [Pan
           troglodytes]
          Length = 1500

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 137/763 (17%), Positives = 265/763 (34%), Gaps = 109/763 (14%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++S+NG+G P   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISISNNGKGXPVVQHKI 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           E +     I  +L    K++     ++G              +W+               
Sbjct: 133 EKMYVLVFIFGQLLTSCKYDDDEKNLTGR-------------TWMD-------------- 165

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQ 207
            N      +        +    +TF P    F +Q  + D +     R  +++     V+
Sbjct: 166 -NMGTLGEME-LKPFNGEDSLCITFQPDLSKFKMQSLDKDIVALLVRRAYDIAGSTKDVK 223

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           + L   +             G  ++V    + K     + +++   + N   ++ +  ++
Sbjct: 224 VFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSE 274

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GG H+  +   +  ++   V+K     K   +V     +    
Sbjct: 275 KGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMW 330

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F SQTKE +            +++             + I+  V   + 
Sbjct: 331 IFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQ 389

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
                   +    +   +          D   R+  +  L L EGDSA      G    G
Sbjct: 390 ---VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVG 446

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL---RYHK 499
           R +    + PLRGKILNV  A   +++ + EI  +I  +G    ++  D + L   RY K
Sbjct: 447 RDK--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGK 504

Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559
           I+IMTD D DG+HI+ LL+ F     PSL+ + FL     P+  +++ K           
Sbjct: 505 IMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEF 564

Query: 560 EDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
           E++  +     +    +    G  +  + + +  D  +     K   P       + A I
Sbjct: 565 EEWKSSTPNHKKWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPE------DDAAI 618

Query: 619 SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLE 678
           S  F+ +   +    L        NF+ ++ ++   G   +   L  +    +     + 
Sbjct: 619 SLAFSKKQIDDRKEWLT-------NFMEDRRQRKLLGLPEDY--LYGQTTTYLTYNDFIN 669

Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKIT 717
              I    S  +R   + ++        ++       DK ++ 
Sbjct: 670 KELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 712


>gi|239914491|dbj|BAH78924.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914493|dbj|BAH78925.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914497|dbj|BAH78927.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914499|dbj|BAH78928.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914501|dbj|BAH78929.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914513|dbj|BAH78935.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914515|dbj|BAH78936.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914517|dbj|BAH78937.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914521|dbj|BAH78939.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914523|dbj|BAH78940.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914525|dbj|BAH78941.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914529|dbj|BAH78943.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914531|dbj|BAH78944.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914533|dbj|BAH78945.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914535|dbj|BAH78946.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914537|dbj|BAH78947.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914539|dbj|BAH78948.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914541|dbj|BAH78949.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914543|dbj|BAH78950.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914545|dbj|BAH78951.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914547|dbj|BAH78952.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914551|dbj|BAH78954.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914553|dbj|BAH78955.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914555|dbj|BAH78956.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914557|dbj|BAH78957.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914559|dbj|BAH78958.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914561|dbj|BAH78959.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914563|dbj|BAH78960.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914565|dbj|BAH78961.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914567|dbj|BAH78962.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914571|dbj|BAH78964.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914573|dbj|BAH78965.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914575|dbj|BAH78966.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914577|dbj|BAH78967.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914589|dbj|BAH78973.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914591|dbj|BAH78974.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 318

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 156/320 (48%), Positives = 215/320 (67%), Gaps = 20/320 (6%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------- 155
            SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F  GI                 
Sbjct: 1   NSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGKMV 60

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             +PL ++G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+R
Sbjct: 61  EVSPLRMSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQR 119

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           S +       + GG++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VL
Sbjct: 120 SGKE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVL 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+
Sbjct: 178 CFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKV 237

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+
Sbjct: 238 PEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARK 297

Query: 395 ARDLTRRKGVLDIASLPGKL 414
           AR++TRRKGVLD   LPGKL
Sbjct: 298 AREMTRRKGVLDGMGLPGKL 317


>gi|115381478|gb|ABI96421.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
          Length = 323

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 195/326 (59%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CF+
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFS 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|109729324|gb|ABG46142.1| GyrB [Pseudomonas sp. UC17F4]
          Length = 291

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 135/270 (50%), Positives = 190/270 (70%), Gaps = 3/270 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT + 
Sbjct: 8   KVSGGLHGVGVSVVNALSEQLILTVRRSGKIWEQTYVHGVPQAPMKIVGDSE-TTGTHIH 66

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV 
Sbjct: 67  FKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EHFKYEGGLRAFVE 124

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K P+ Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS
Sbjct: 125 YLNTNKTPVNQVFHFSVQREDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 184

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E+   +KK+K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 185 ALTRNLNNYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 244

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
            VE  +    S +L E+P EAK +V K++D
Sbjct: 245 AVEQEMGKYFSDFLLENPNEAKAVVGKMID 274


>gi|296802132|gb|ADH51564.1| DNA gyrase subunit beta [Rhizobium sp. J3-A127]
          Length = 252

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 162/251 (64%), Positives = 204/251 (81%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PL VTG     +GTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSVWLKLKIRRAGKIHEMSFTHGVADAPLKVTGDYEGRSGTE 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTFLPS+D F+  +F+Y TL+HRLREL+FLNS V+I L D+R  + R+  M Y GG+EAF
Sbjct: 61  VTFLPSTDTFTKTEFDYGTLEHRLRELAFLNSGVRILLTDRRKSDIRQEEMLYDGGLEAF 120

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR KKPL+  P+ I+G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G 
Sbjct: 121 VRYLDRAKKPLVDKPVAIRGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGF 180

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTRQ+TSY + S   KK+K S+ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEV
Sbjct: 181 RAALTRQVTSYADTSGILKKEKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 240

Query: 353 RSVVESFVNDG 363
           R VVE+ VN+ 
Sbjct: 241 RPVVENLVNEA 251


>gi|11078809|dbj|BAB17409.1| DNA gyrase subunit B [Pseudomonas pseudoalcaligenes]
          Length = 297

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 155/300 (51%), Positives = 216/300 (72%), Gaps = 4/300 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F++D L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV YL+
Sbjct: 60  SEETFANIHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLN 117

Query: 238 RHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K  + Q     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSAL
Sbjct: 118 TNKTVVNQVFHFSVQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRHLNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297


>gi|11078723|dbj|BAB17366.1| DNA gyrase subunit B [Pseudomonas oleovorans]
          Length = 296

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F++D L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV YL+
Sbjct: 60  SEETFANIHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 TNKTVVNQVFHFSVQREDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RHVNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|115381556|gb|ABI96460.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 323

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 197/326 (60%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I I++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGIEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381466|gb|ABI96415.1| gyrase B [Salmonella enterica subsp. enterica serovar Panama]
          Length = 323

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 195/326 (59%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y+++   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDQEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|295979451|dbj|BAJ07398.1| DNA gyrase subunit B [Comamonas sp. MBIC 3276]
          Length = 267

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 130/268 (48%), Positives = 172/268 (64%), Gaps = 32/268 (11%)

Query: 68  LNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
           ++ DGS +V DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHG
Sbjct: 1   IHADGSLSVIDNGRGIPTRVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHG 59

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN------------GILDNPLVVTGSAGNDTG 170
           VGVS VNALS WLKL ++R+G +YE+ F              G+  +P+ V G + +  G
Sbjct: 60  VGVSCVNALSIWLKLNVRRDGEVYEIDFSRGHVQNRPIEIVDGVEVSPMRVVGKS-DKRG 118

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T+V FLP ++IF+    F Y+ L  RLRELSFLN+ V+I L D+R  + RE      GG+
Sbjct: 119 TKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDER--DGREDDFSGAGGV 176

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTNN 279
             FV +++ +KK L  +     G+R            I +++AM+WND Y E VLCFTNN
Sbjct: 177 MGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVAMQWNDSYAEQVLCFTNN 236

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKS 307
           IPQ+DGGTHL+GLR+A+TR I  Y+E++
Sbjct: 237 IPQRDGGTHLTGLRAAMTRVIGKYIEQN 264


>gi|9632631|ref|NP_049621.1| gp39 topoisomerase II, large subunit, N-terminal region
           [Enterobacteria phage T4]
 gi|1351264|sp|P09176|TOPL_BPT4 RecName: Full=DNA topoisomerase large subunit; AltName:
           Full=Protein Gp39
 gi|5354255|gb|AAD42462.1|AF158101_49 gp39 topoisomerase II, large subunit, N-terminal region
           [Enterobacteria phage T4]
 gi|728617|emb|CAA29569.1| DNA topoisomerase large subunit [Enterobacteria phage T4]
          Length = 516

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 128/507 (25%), Positives = 205/507 (40%), Gaps = 63/507 (12%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES----------------GLHHMIYEVLDNAIDESLE 58
           I+IL  ++ +KKR  MYIG +  E+                GL  +I E++DN++DE + 
Sbjct: 6   IKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEGIR 65

Query: 59  ---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKE---EGISAAEVIMTRLHAGGKFNQK 112
               +A+ I VT+  +   TV DNGRGIP  + K    E I       T   AGG F   
Sbjct: 66  TKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDD 124

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
             +V+GG++GVG S+ N  S           N   +   NG+ +         G   GT 
Sbjct: 125 KERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWEDI--PGKWKGTR 182

Query: 173 VTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           VTF+P    F          D    RL+ L+ +   +Q +   K+     +         
Sbjct: 183 VTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKVQGNFKKY------- 235

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
                               I   ++N SI +  R  DG+ +  L + NNI  K+GG H+
Sbjct: 236 ------------ARQYDEHAIVQEQENCSIAVG-RSPDGFRQ--LTYVNNIHTKNGGHHI 280

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKLV 348
                 +   +   +++       K  V     +E  T V+ ++ M + R   QTKE+L 
Sbjct: 281 DCAMDDICEDLIPQIKRK-----FKIDVTKARVKECLTIVMFVRDMKNMRLIRQTKERLT 335

Query: 349 SS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           S   E+RS ++          L       + I+  +++A++ R  A      T+      
Sbjct: 336 SPFGEIRSHIQLDAKKISRDIL-----NNEAILMPIIEAALARKLAAEKAAETKAAKKAS 390

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            A +   +          + LFL EGDSA G     R +E     PLRGK+LN     + 
Sbjct: 391 KAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYA 450

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDIN 493
            ML ++E+  +    G  +G+ +F+  
Sbjct: 451 DMLKNKELFDICAITGLVLGEKAFEEK 477


>gi|115381538|gb|ABI96451.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
          Length = 323

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 195/326 (59%), Positives = 251/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQ+K+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQSKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|19909721|dbj|BAB87056.1| DNA gyrase subunit B [Comamonas sp. E6]
          Length = 262

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 128/263 (48%), Positives = 169/263 (64%), Gaps = 32/263 (12%)

Query: 73  SCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
           S +V+DNGRGIPT     D H E   SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS 
Sbjct: 1   SISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSC 59

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTF 175
           VNALS WL+L ++R+G ++++ F  G +             +P+ VTG A    GTEV F
Sbjct: 60  VNALSKWLRLTVRRDGKVHQIEFAKGFVQNRLLETVDGFEVSPMKVTG-ATEKRGTEVHF 118

Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           LP ++IF     F+Y+ L  RLRELSFLN+ V+I L D+RS +         GG++ FV 
Sbjct: 119 LPDTEIFQQNHEFHYEILAKRLRELSFLNNGVRIRLKDERSGKE--DDFSGAGGVKGFVE 176

Query: 235 YLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           +++  KK L  +     G+R            I +++AM+WNDGY+E VLCFTNNIPQ+D
Sbjct: 177 FINGTKKVLHPTAFHATGTRPAESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRD 236

Query: 285 GGTHLSGLRSALTRQITSYVEKS 307
           GGTHL+GLR+A+TR I  Y+E +
Sbjct: 237 GGTHLTGLRAAMTRVIGKYIESN 259


>gi|215270999|emb|CAR48178.1| gyrase B subunit [Vibrio harveyi]
 gi|215271003|emb|CAR48180.1| gyrase B subunit [Vibrio harveyi]
 gi|215271005|emb|CAR48181.1| gyrase B subunit [Vibrio harveyi]
          Length = 314

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 176/316 (55%), Positives = 242/316 (76%), Gaps = 3/316 (0%)

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
            ++ +G    PL V G   + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V 
Sbjct: 1   QTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVS 59

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWN 266
           I L+D+R  +       ++GGI+AFV +L+ +K P+++        R++ IS+++AM+WN
Sbjct: 60  IKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWN 118

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           DG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG 
Sbjct: 119 DGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGL 178

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+
Sbjct: 179 TAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAA 238

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+
Sbjct: 239 RAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRK 298

Query: 447 NQAILPLRGKILNVER 462
           NQAILPL+GKILNVE+
Sbjct: 299 NQAILPLKGKILNVEK 314


>gi|209408308|emb|CAP19839.1| DNA gyrase subunit B [Pseudomonas balearica]
          Length = 294

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 153/296 (51%), Positives = 211/296 (71%), Gaps = 4/296 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G     TGTE+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEELILTIRREGKVWEQIYRHGVPQAPLTAMGETE-GTGTEIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFVSY
Sbjct: 60  KPSAETFKNIHFSWDILAKRLRELSFLNSGVGILLRDERTAKE--ELFKYEGGLSAFVSY 117

Query: 236 LDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           L+ +K  + Q     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RS
Sbjct: 118 LNTNKSAINQVFHFNVQREEDGVGVEIALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
            VE  +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA+ 
Sbjct: 238 AVEQEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAAC 293


>gi|209408306|emb|CAP19838.1| DNA gyrase subunit B [Pseudomonas xanthomarina]
          Length = 290

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 148/293 (50%), Positives = 209/293 (71%), Gaps = 3/293 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G    D+GT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEELILTIRREGKVWEQIYRHGVPQAPLAAVGDTE-DSGTQIHFK 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL
Sbjct: 60  PSAETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERNAKE--ELFKYEGGLSAFVAYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSAL
Sbjct: 118 NTNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           E  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 EQEMGKHFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 290


>gi|148762433|dbj|BAF63918.1| DNA gyrase subunit B [Virgibacillus permianicus]
          Length = 328

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 139/332 (41%), Positives = 202/332 (60%), Gaps = 9/332 (2%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTE 172
           YKV GGLHGVG SVVNALS WL++ I REG+ Y   F N G     L   G+      T 
Sbjct: 1   YKVCGGLHGVGASVVNALSEWLEVTIHREGHTYFQRFENGGKPVGSLEKKGTTKKKGST- 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P   IF+   ++++TL  RLRE +FL   ++I L D R+ +  E       G++AF
Sbjct: 60  IHFKPDPGIFTTIVYDFETLSERLREAAFLLKGLKIQLSDLRNNQHEEYQF--PDGLKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+  K  L       +G +  I +D A ++NDGY E++L F N++  KDGGTH SG 
Sbjct: 118 VHYLNEEKDTLHPVVA-FEGEQQGIEVDFAFQFNDGYAESMLSFVNHVRTKDGGTHESGA 176

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSS 350
           R+A+TR    Y  ++   K+  +++ G D REGFTS++S+++P+   +F  QTK KL + 
Sbjct: 177 RTAITRTFNDYARRAGLLKEKDKNLEGTDIREGFTSIVSVRVPEEKLQFEGQTKGKLGTP 236

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIA 408
           E RS V++ V++ LS +LEE+P  + +++KK + A   R+AAR+AR+   T +K      
Sbjct: 237 EARSAVDAIVSEKLSYFLEENPDVSGLLIKKAIKAKEAREAARKAREEARTGKKRKRKDT 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
            L GKL     ++PK++EL+LVEGDSAGGSAK
Sbjct: 297 ILSGKLTPAQSKNPKRNELYLVEGDSAGGSAK 328


>gi|115381576|gb|ABI96470.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
          Length = 323

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 250/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELILVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|289600056|gb|ADD12976.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 308

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 167/310 (53%), Positives = 224/310 (72%), Gaps = 2/310 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VE DS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVERDS 298

Query: 435 AGGSAKQGRS 444
           AGGSA+QGR+
Sbjct: 299 AGGSAQQGRN 308


>gi|116069860|gb|ABI13059.2| DNA gyrase subunit B [Cupriavidus sp. PS12]
 gi|116069862|gb|ABI13060.2| DNA gyrase subunit B [Cupriavidus sp. WBF7]
          Length = 319

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 157/322 (48%), Positives = 216/322 (67%), Gaps = 20/322 (6%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING-----------------I 154
            SYKVSGGLHGVGVS VNALS WL+L ++R+G  + + F  G                 +
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQAHLLEFAQGAVQNRLVETVTGPDGQPV 60

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             +P+ + G   +  GTEV FL   +IF+  +F+Y+ L  R+RELSFLN+ V I L D+R
Sbjct: 61  EVSPMKILGPT-DKRGTEVHFLADEEIFTNVEFHYEILAKRIRELSFLNNGVHIRLADQR 119

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           + +       + GG++ FV Y++R K  L  +       +D I+++++M+WNDGY+E VL
Sbjct: 120 TGKE--EDFAFSGGVKGFVEYINRGKSTLHPNIFYANTEKDGIAVEVSMQWNDGYNEQVL 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+GLR+A+TR +  Y+E++  +KK K    GDD REG   VLS+K+
Sbjct: 178 CFTNNIPQRDGGTHLTGLRAAMTRVMNKYIEENEIAKKAKVETTGDDMREGLACVLSVKV 237

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+FSSQTK+KLVSSEVR  VE  V   L  +L E P++AKII  K++DA+  R+AAR+
Sbjct: 238 PEPKFSSQTKDKLVSSEVRLPVEELVAKALGDFLLETPVDAKIICGKIVDAARAREAARK 297

Query: 395 ARDLTRRKGVLDIASLPGKLAD 416
           AR++TRRKGVLD   LPGKLAD
Sbjct: 298 AREMTRRKGVLDGMGLPGKLAD 319


>gi|209407300|emb|CAP72535.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 296

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F
Sbjct: 1   VSGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLSPVGET-DTSGTQIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PS+  F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+Y
Sbjct: 60  KPSAQTFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+ +K P+ Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSA
Sbjct: 118 LNTNKTPVNQVFHFDMQREDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 LTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           VE  +    S +L E+P EA+ +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKL
Sbjct: 238 VEQEMGKHFSDFLLENPGEARAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 296


>gi|115381462|gb|ABI96413.1| gyrase B [Salmonella enterica subsp. enterica serovar Coeln]
          Length = 323

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 194/326 (59%), Positives = 250/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TL+ ALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLMRALGC 323


>gi|115381474|gb|ABI96419.1| gyrase B [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 323

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 195/326 (59%), Positives = 249/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
            TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 KTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+  LITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVARLITALGC 323


>gi|307343844|emb|CBJ19527.1| gyrase B subunit [Micromonospora sp. SG2]
          Length = 350

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 150/352 (42%), Positives = 224/352 (63%), Gaps = 8/352 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G ++   + N    +PL   G   + TG+ VTF P   +F   DF++ T+  RL
Sbjct: 2   VEIHKSGFVWRQQYHNSKP-SPLEK-GETTDRTGSAVTFWPDESVFETLDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R       + RE+T FY+GGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLNRALRIHLLDERVPEGEEGKLREVTFFYEGGIADFVRHLNASKNPIHKTVVEFG 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        
Sbjct: 120 AEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGADKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGT
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 350


>gi|215271001|emb|CAR48179.1| gyrase B subunit [Vibrio harveyi]
          Length = 314

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 176/316 (55%), Positives = 240/316 (75%), Gaps = 3/316 (0%)

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
            ++ +G    PL V G   + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V 
Sbjct: 1   QTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVS 59

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-RDNISIDLAMRWN 266
           I L+D+R  +       ++GGI+AFV +L+ +K P+++          D IS+++AM+WN
Sbjct: 60  IKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEPEDGISVEVAMQWN 118

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
           DG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG 
Sbjct: 119 DGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGL 178

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+
Sbjct: 179 TAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAA 238

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+
Sbjct: 239 RAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRK 298

Query: 447 NQAILPLRGKILNVER 462
           NQAILPL+GKILNVE+
Sbjct: 299 NQAILPLKGKILNVEK 314


>gi|308522560|dbj|BAJ22893.1| gyrase B subunit [Vibrio sagamiensis]
          Length = 265

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 137/265 (51%), Positives = 190/265 (71%), Gaps = 3/265 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DQTGTQIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ FS  +F+YD L  RLRELSFLNS + I LID+R  +       Y+GGI+AFV +L
Sbjct: 60  PSAETFSQTEFHYDILAKRLRELSFLNSGISIKLIDEREADKS-DHYMYEGGIQAFVEHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           + +K P++         R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 119 NTNKTPIIDKIFHFNFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 LTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVK 380
           VES + + LS +L ++P EAK++  
Sbjct: 239 VESAMGEKLSEFLIDYPTEAKMVCS 263


>gi|294622315|ref|ZP_06701358.1| DNA topoisomerase 4 subunit B [Enterococcus faecium U0317]
 gi|291598207|gb|EFF29305.1| DNA topoisomerase 4 subunit B [Enterococcus faecium U0317]
          Length = 441

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 148/421 (35%), Positives = 233/421 (55%), Gaps = 13/421 (3%)

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           M   +   G ++ I +++A ++NDGY ENVL F NN+  KDGGTH +G+++A+T+    Y
Sbjct: 1   MTPVVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEY 60

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K+  +++ G D REG  +VLSI++P+   +F  QTKEKL +   R+VV++ ++
Sbjct: 61  ARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVIS 120

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
           + +  +L+E+   ++++V+K + A   R+AAR+AR+     +K     + L GKL     
Sbjct: 121 EQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQS 180

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I 
Sbjct: 181 RNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIY 240

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
            +G G+G   F I    Y K+IIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  P
Sbjct: 241 TIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALP 299

Query: 540 PLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
           PLY +++G+  + V +    +D    +I +     +       G ++   L         
Sbjct: 300 PLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-----T 354

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
           +D   +           +          +  +     + + +   L       +K     
Sbjct: 355 MDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDTE 414

Query: 657 I 657
           I
Sbjct: 415 I 415



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +    +  ++               +      S  +          ++   ++     
Sbjct: 138 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 197

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 198 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 257

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717
           D ++           +      F +      I + ++      +  +    G K  I   
Sbjct: 258 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 317

Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                L   I  +G KG  +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+  
Sbjct: 318 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 376

Query: 777 FSRLMGDEVEPRREFIQEN 795
            + LMGD+VEPRR++I+ +
Sbjct: 377 VTTLMGDKVEPRRKWIENH 395


>gi|115381624|gb|ABI96494.1| gyrase B [Salmonella enterica subsp. enterica serovar Blegdam]
          Length = 323

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 195/326 (59%), Positives = 250/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+  LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLGGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|209863335|gb|ACI88767.1| DNA gyrase subunit B [Aeromonas sp. JH82]
          Length = 333

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 195/335 (58%), Positives = 249/335 (74%), Gaps = 3/335 (0%)

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             PL       +      +F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+R 
Sbjct: 1   QAPLKHILRCHHHRD-RRSFWPSPTIFSDTLFHYEILAQRLRELSFLNSGVSIRLMDER- 58

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            + RE    Y+GGI+AFV YL++ K P+          +D + + +AM+WND Y E   C
Sbjct: 59  -DGREAHFCYEGGIKAFVEYLNQKKTPIHPKVFHFTTEQDGVGVQVAMQWNDAYQEGGYC 117

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQ+DGGTHL G R+ALTR + SY+EK   SKKDK +  GDD REG ++V+S+K P
Sbjct: 118 FTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSKKDKSAPSGDDVREGLSAVISVKGP 177

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR+A
Sbjct: 178 DPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKA 237

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 238 RELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 297

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           KILNVE+ARFDKM+SSQE+GTLITALG GIG+D +
Sbjct: 298 KILNVEKARFDKMISSQEVGTLITALGCGIGRDEY 332


>gi|115381582|gb|ABI96473.1| gyrase B [Salmonella enterica subsp. diarizonae]
          Length = 323

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 196/326 (60%), Positives = 250/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I + +A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVQVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|321117354|dbj|BAJ72154.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 177/336 (52%), Positives = 240/336 (71%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS E +S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEXKSAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RA ++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAXEMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI P++GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKXQAIPPVKGKILNVEKTRFDKMLASPEG 333


>gi|289600054|gb|ADD12975.1| DNA gyrase subunit beta [Aeromonas caviae]
          Length = 307

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 171/310 (55%), Positives = 225/310 (72%), Gaps = 3/310 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 60  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 117

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K
Sbjct: 118 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAK 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 178 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 238 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 297

Query: 435 AGGSAKQGRS 444
           AGGSAKQGR+
Sbjct: 298 AGGSAKQGRN 307


>gi|289600062|gb|ADD12979.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 308

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 167/310 (53%), Positives = 223/310 (71%), Gaps = 2/310 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G + + TGTEV F PS  IF+   ++Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE+   Y+GGI+AFV YL+++K P+          +
Sbjct: 61  RLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K
Sbjct: 119 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +
Sbjct: 179 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGD 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VE DS
Sbjct: 239 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVERDS 298

Query: 435 AGGSAKQGRS 444
           AGGSAK GR+
Sbjct: 299 AGGSAKHGRN 308


>gi|115381648|gb|ABI96506.1| gyrase B [Salmonella enterica subsp. enterica serovar Indiana]
          Length = 323

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 193/326 (59%), Positives = 247/326 (75%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+N AILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE  TLI ALG 
Sbjct: 298 LNVEKARFDKMLSSQEGATLIPALGC 323


>gi|209408294|emb|CAP19832.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 293

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 151/295 (51%), Positives = 209/295 (70%), Gaps = 3/295 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F
Sbjct: 1   VSGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PSS+ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+Y
Sbjct: 60  KPSSETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+ +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSA
Sbjct: 118 LNTNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 LTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           VE  +      +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA  
Sbjct: 238 VEQEMGKYFGDFLLEHPGEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGC 292


>gi|115381574|gb|ABI96469.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
          Length = 323

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 194/326 (59%), Positives = 248/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E P +AKI+V K++D +  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLEKPSDAKIVVGKIIDVARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           + RRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MIRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|239914495|dbj|BAH78926.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 315

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 154/318 (48%), Positives = 213/318 (66%), Gaps = 20/318 (6%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------------- 155
            SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F  GI                 
Sbjct: 1   NSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGKMV 60

Query: 156 -DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
             +PL ++G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+R
Sbjct: 61  EVSPLRMSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQR 119

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274
           S +       + GG++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VL
Sbjct: 120 SGKE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVL 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           CFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+
Sbjct: 178 CFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKV 237

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+
Sbjct: 238 PEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARK 297

Query: 395 ARDLTRRKGVLDIASLPG 412
           AR++TRRKGVLD   LPG
Sbjct: 298 AREMTRRKGVLDGMGLPG 315


>gi|289600052|gb|ADD12974.1| DNA gyrase subunit beta [Aeromonas jandaei]
          Length = 307

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 173/310 (55%), Positives = 225/310 (72%), Gaps = 3/310 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 60  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 117

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY+EK   SKK K
Sbjct: 118 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSKKAK 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 178 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 238 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 297

Query: 435 AGGSAKQGRS 444
           AGGSAKQGR+
Sbjct: 298 AGGSAKQGRN 307


>gi|215270987|emb|CAR48172.1| gyrase B subunit [Vibrio harveyi]
 gi|215270989|emb|CAR48173.1| gyrase B subunit [Vibrio harveyi]
 gi|215270991|emb|CAR48174.1| gyrase B subunit [Vibrio harveyi]
 gi|215270993|emb|CAR48175.1| gyrase B subunit [Vibrio harveyi]
 gi|215270995|emb|CAR48176.1| gyrase B subunit [Vibrio harveyi]
 gi|215270997|emb|CAR48177.1| gyrase B subunit [Vibrio harveyi]
          Length = 315

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 178/317 (56%), Positives = 244/317 (76%), Gaps = 3/317 (0%)

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           ++ +G    PL V G   + TGT++ F PS++ FS  +F+YD L  RLRELSFLNS V I
Sbjct: 1   TYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSI 59

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWND 267
            L+D+R  +       ++GGI+AFV +L+ +K P+++        R++ IS+++AM+WND
Sbjct: 60  KLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWND 118

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K +  GDD REG T
Sbjct: 119 GFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLT 178

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+ 
Sbjct: 179 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAAR 238

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR+AR++TRRKG LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+N
Sbjct: 239 AREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 298

Query: 448 QAILPLRGKILNVERAR 464
           QAILPL+GKILNVE+AR
Sbjct: 299 QAILPLKGKILNVEKAR 315


>gi|321117374|dbj|BAJ72164.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 178/336 (52%), Positives = 240/336 (71%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+ GGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRGGGTHLAGFRAAMTRTLNAYMDKEGFSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RA ++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAXEMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKXQAIPPLKGKILNVEKTRFDKMLASPEG 333


>gi|307343758|emb|CBJ19484.1| gyrase B subunit [Micromonospora auratinigra]
          Length = 355

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 153/354 (43%), Positives = 226/354 (63%), Gaps = 8/354 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + N     PL   G + + TG+ V+F P +D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGSVWRQQYHNSKP-TPLEK-GESTDRTGSAVSFWPDADVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FL   + I L+D+R       + RE+T  Y GGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLTRGLTIHLLDERVPEGEEGKLREVTFRYDGGIADFVRHLNASKNPIHKTVVEFG 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGA-EKKLL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 352


>gi|66271240|gb|AAY43833.1| DNA gyrase subunit B [Vibrio natriegens]
          Length = 289

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 156/290 (53%), Positives = 212/290 (73%), Gaps = 3/290 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  + L I R G I+  ++ +G  + PL V G   + TGTE+ F 
Sbjct: 1   SGGLHGVGVSVVNALSKKVTLTIHRGGQIHTQTYHHGEPEAPLKVIGDT-DKTGTEIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + F+  +F+YD L  RLRELSFLNS V I LIDKR  E +     ++GGI+AFV +L
Sbjct: 60  PSEETFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFMFEGGIQAFVEHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           + +K P++Q        RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 119 NTNKTPIIQKIFHFDNERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + ++++K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 LTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
            ES + + LS +L E+P EAKI+  K++DA+  RDAAR+AR++TRRKG L
Sbjct: 239 AESAMGEKLSEFLLENPSEAKIVCTKIIDAARARDAARKAREMTRRKGAL 288


>gi|307343858|emb|CBJ19534.1| gyrase B subunit [Micromonospora sp. SGA9]
          Length = 360

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 152/362 (41%), Positives = 226/362 (62%), Gaps = 8/362 (2%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           + + I + G ++   + +      ++  G   + TG+ V+F P  D+F   DF++ T+  
Sbjct: 1   MAVVIHKSGFVWRQQYTHSKP--SVLEKGETTDRTGSAVSFWPDPDVFETVDFDFQTIYR 58

Query: 195 RLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           RL+E++FLN  + I L+D+R       + RE+T  Y GGI  FV +L+  K P+ ++ + 
Sbjct: 59  RLQEMAFLNRGITIHLLDERVPEGEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVVE 118

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
            +   + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G RSALT  +  Y      
Sbjct: 119 FEAEEEGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKK- 177

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
             K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W +
Sbjct: 178 LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFD 237

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAK I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+
Sbjct: 238 RNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFI 297

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D 
Sbjct: 298 VEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDDF 357

Query: 490 FD 491
             
Sbjct: 358 DM 359


>gi|33636521|gb|AAQ23558.1| RE49802p [Drosophila melanogaster]
          Length = 1157

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/640 (17%), Positives = 221/640 (34%), Gaps = 47/640 (7%)

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSF 150
           +    +I   L     +N    KV+GG +G G  + N  S+   +    RE    ++ ++
Sbjct: 1   MYVPTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTW 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQ 207
            N +     V          T +TF P    F +   + D    +  R  +++  +  V 
Sbjct: 61  GNNMGKASDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVS 120

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           + L   +                  +   D    P ++    +   R  ++   + R   
Sbjct: 121 VFLNGNKLGVRNFKDYIDL-----HIKNTDDDSGPPIKIVHEVANERWEVACCPSDR--- 172

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
                 + F N+I    GG H+  +   L +Q+   ++K     K   ++     R    
Sbjct: 173 --GFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLEVLKKKN---KGGINIKPFQVRNHLW 227

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F SQTKE +   +     +  +++     + +       IV+ VL  + 
Sbjct: 228 VFVNCLIENPTFDSQTKENMTLQQKGFGSKCTLSEKFINNMSKSG-----IVESVLAWAK 282

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG---RS 444
            +     A+   R+   +          +   ++  K  L L EGDSA   A  G     
Sbjct: 283 FKAQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSIKCTLILTEGDSAKSLAVSGLGVIG 342

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK---LRYHKII 501
           R+   + PLRGK+LNV  A F ++  + EI  L   +G    +     +    LRY K++
Sbjct: 343 RDLYGVFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVM 402

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           IMTD D DG+HI+ LL+ F     P L+   FL     P+   T+             E+
Sbjct: 403 IMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEE 462

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           +  + +      +        S          + +  +  +D   +      + +V    
Sbjct: 463 WKNDTANHHTYNIKYYKGLGTS---------TSKEAKEYFQDMDRHRILFKYDGSVDDES 513

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
                 ++   S    L N ++ +  + E            L  +  + +     +    
Sbjct: 514 IVMAFSKKHIESRKVWLTNHMDEVKRRKELGL-----PERYLYTKGTKSITYADFINLEL 568

Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKIT 717
           +    +  +R   + ++        ++       DK ++ 
Sbjct: 569 VLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 608


>gi|153866177|ref|ZP_01997948.1| DNA topoisomerase II [Beggiatoa sp. SS]
 gi|152145045|gb|EDN72051.1| DNA topoisomerase II [Beggiatoa sp. SS]
          Length = 248

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 124/233 (53%), Positives = 165/233 (70%), Gaps = 3/233 (1%)

Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           MT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L L I R+G I+E ++ + +   PL
Sbjct: 1   MTVLHAGGKFDTNSYKVSGGLHGVGVSVVNALSEELHLTIYRDGKIHEQTYRDSVPVAPL 60

Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219
           VVTG + + TG+E+ F PS+  F+  +++YD L +RLRELSFLN+ V+I LID+R+ +  
Sbjct: 61  VVTGDS-DKTGSEIRFKPSAKTFTNTEYHYDILANRLRELSFLNAGVRIRLIDERTAKDT 119

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                 +GGI +FV  L+R+K  L  S   +   +D+IS+++AM+WND YHEN  CFTNN
Sbjct: 120 --VFEDEGGIRSFVELLNRNKTVLHDSVFYLLSQKDDISVEVAMQWNDSYHENFFCFTNN 177

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           IPQ+DGGTHL+G R A+TR   +Y+E+    KK K S  GDD REG T+VLS+
Sbjct: 178 IPQRDGGTHLAGFRGAMTRTFNNYLEREGFLKKAKVSTSGDDVREGLTAVLSV 230


>gi|307343788|emb|CBJ19499.1| gyrase B subunit [Micromonospora sagamiensis]
          Length = 349

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 152/352 (43%), Positives = 223/352 (63%), Gaps = 8/352 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I ++G ++   +      +PL   G   + TG+ V F P  D+F   DF++ T+  RL
Sbjct: 1   VEIHKDGFVWRQKYTASKP-SPLDK-GETTDRTGSAVAFWPDPDVFETVDFDFQTIYRRL 58

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN  + I L+D+R PE      RE+T  YKGGI  FV +L+  K P+ ++ +   
Sbjct: 59  QEMAFLNRGLTIHLLDERVPEDEDGRQREVTFCYKGGIADFVRHLNASKNPIHKTVVEFF 118

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
           G  + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        
Sbjct: 119 GEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSLVNKYGA-EKKLL 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +
Sbjct: 178 KADEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 238 PAEAKVIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGT
Sbjct: 298 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 349


>gi|289600034|gb|ADD12965.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|289600072|gb|ADD12984.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 307

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 172/310 (55%), Positives = 225/310 (72%), Gaps = 3/310 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 60  RLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 117

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 118 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 178 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 238 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 297

Query: 435 AGGSAKQGRS 444
           AGGSAKQGR+
Sbjct: 298 AGGSAKQGRN 307


>gi|321117342|dbj|BAJ72148.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 179/336 (53%), Positives = 241/336 (71%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+ GGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRGGGTHLAGFRAAMTRTLNAYMDKEGFSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASPEG 333


>gi|156536670|gb|ABU80439.1| gyrase B [Photorhabdus temperata]
          Length = 317

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 182/320 (56%), Positives = 242/320 (75%), Gaps = 4/320 (1%)

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQ 207
           ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRELSFLNS V 
Sbjct: 1   TYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVS 59

Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           I L+DKR+    E    YKGGI+AFV +L+++K P+  +       +D+I +++A++WND
Sbjct: 60  IRLLDKRT--NIEDHFHYKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVALQWND 117

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           G+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD REG  
Sbjct: 118 GFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLV 177

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K++DA+ 
Sbjct: 178 AVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAAR 237

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+N
Sbjct: 238 AREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 297

Query: 448 QAILPLRGKILNVERARFDK 467
           QAILPL+GKILNVE+ARFDK
Sbjct: 298 QAILPLKGKILNVEKARFDK 317


>gi|187765678|gb|ACD36626.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765680|gb|ACD36627.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765682|gb|ACD36628.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765684|gb|ACD36629.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765686|gb|ACD36630.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765688|gb|ACD36631.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765690|gb|ACD36632.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765692|gb|ACD36633.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765694|gb|ACD36634.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765696|gb|ACD36635.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765698|gb|ACD36636.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765700|gb|ACD36637.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765702|gb|ACD36638.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765704|gb|ACD36639.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765706|gb|ACD36640.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765708|gb|ACD36641.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765710|gb|ACD36642.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765712|gb|ACD36643.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765714|gb|ACD36644.1| DNA gyrase subunit B [Vibrio parahaemolyticus AN-5034]
 gi|187765716|gb|ACD36645.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765718|gb|ACD36646.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765720|gb|ACD36647.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765722|gb|ACD36648.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765724|gb|ACD36649.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765726|gb|ACD36650.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765728|gb|ACD36651.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765730|gb|ACD36652.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765732|gb|ACD36653.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765734|gb|ACD36654.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765736|gb|ACD36655.1| DNA gyrase subunit B [Vibrio parahaemolyticus AQ4037]
 gi|187765738|gb|ACD36656.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765740|gb|ACD36657.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765742|gb|ACD36658.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765744|gb|ACD36659.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765746|gb|ACD36660.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765748|gb|ACD36661.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765750|gb|ACD36662.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765752|gb|ACD36663.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765754|gb|ACD36664.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765756|gb|ACD36665.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765758|gb|ACD36666.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 185

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 97/182 (53%), Positives = 128/182 (70%), Gaps = 2/182 (1%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS
Sbjct: 1   SVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
             + L I R G+I+  ++ +G  + PL V G   + TGT++ F PS++ FS  +F+YD L
Sbjct: 61  EKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFSNTEFHYDIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLNS V I LID+R  +  +    Y+GGI+AFV +L+ +K P+++       
Sbjct: 120 AKRLRELSFLNSGVSIKLIDEREADK-QDHFMYEGGIQAFVQHLNTNKTPIIEKIFHFDL 178

Query: 253 SR 254
            R
Sbjct: 179 ER 180


>gi|11078765|dbj|BAB17387.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|11078807|dbj|BAB17408.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 296

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 156/299 (52%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+
Sbjct: 60  SSETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 TNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +      +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFGDFLLEHPGEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|23336860|ref|ZP_00121997.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bifidobacterium longum DJO10A]
          Length = 191

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/157 (47%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 3   DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62
           +++    Y+A  +++L+GL+AV+ RP MYIG T G  GLHH++YE++DN++DE+L GYA 
Sbjct: 36  ESMALEHYEASDLRLLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 94

Query: 63  IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122
            I +T+  D    V D+GRGIP D    EG+S  E +MT+LHAGGKF    Y VSGGLHG
Sbjct: 95  HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 154

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159
           VG+SVVNALS+ + + ++R+G  +  ++I+     PL
Sbjct: 155 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPL 191


>gi|164456725|dbj|BAF97855.1| gyrase B subunit [Vibrio rumoiensis]
          Length = 270

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 137/272 (50%), Positives = 191/272 (70%), Gaps = 4/272 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  ++L IKR G +++  + +G+ + PL V G    +TGT + F PS
Sbjct: 1   GLHGVGVSVVNALSEKVELTIKRHGEVFQQVYKHGVPEAPLAVIGKTE-ETGTRIRFWPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+  +F+YD L  RLRELSFLNS V I L D+R  E +     ++GGI AFV +L+R
Sbjct: 60  EETFTNIEFHYDILAKRLRELSFLNSGVSIKLTDER-EEDKSDHFMFEGGIRAFVEHLNR 118

Query: 239 HKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +K P+ Q           D I++++AM+WND + E V CFTNNIPQ+DGGTHL+G R AL
Sbjct: 119 NKTPIHQKIFYFDHAREEDGITVEVAMQWNDTFQEGVYCFTNNIPQRDGGTHLAGFRGAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + ++++K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V
Sbjct: 179 TRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 238

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ES +++ LS +L E+P EAKI+  K++DA+  
Sbjct: 239 ESAMSEKLSEFLIENPNEAKIVCGKIIDAARA 270


>gi|289600024|gb|ADD12960.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|289600026|gb|ADD12961.1| DNA gyrase subunit beta [Aeromonas sp. MM.1.1a]
 gi|289600064|gb|ADD12980.1| DNA gyrase subunit beta [Aeromonas sp. MM.2.0]
 gi|289600066|gb|ADD12981.1| DNA gyrase subunit beta [Aeromonas media]
 gi|289600068|gb|ADD12982.1| DNA gyrase subunit beta [Aeromonas sp. MM.2.5]
 gi|289600074|gb|ADD12985.1| DNA gyrase subunit beta [Aeromonas media]
          Length = 307

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 170/310 (54%), Positives = 225/310 (72%), Gaps = 3/310 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 60  RLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 117

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 118 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 178 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 238 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 297

Query: 435 AGGSAKQGRS 444
           AGGSAKQGR+
Sbjct: 298 AGGSAKQGRN 307


>gi|11078755|dbj|BAB17382.1| DNA gyrase subunit B [Pseudomonas taetrolens]
          Length = 296

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIILKDERSGKE--ELFKYEGGLRAFVDYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNEVFHFSVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E P EAK+IV K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKFFSDFLLERPNEAKLIVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|289600046|gb|ADD12971.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 307

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 172/310 (55%), Positives = 225/310 (72%), Gaps = 3/310 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 60  RLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 117

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 118 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 178 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 238 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 297

Query: 435 AGGSAKQGRS 444
           AGGSAKQGR+
Sbjct: 298 AGGSAKQGRN 307


>gi|289600058|gb|ADD12977.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 307

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 172/310 (55%), Positives = 224/310 (72%), Gaps = 3/310 (0%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSS-GTGTEVRFWPSPAIFSDTLFHYEILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +
Sbjct: 60  RLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 117

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K
Sbjct: 118 DGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +
Sbjct: 178 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDS
Sbjct: 238 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 297

Query: 435 AGGSAKQGRS 444
           AGGSAKQGR+
Sbjct: 298 AGGSAKQGRN 307


>gi|11078801|dbj|BAB17405.1| DNA gyrase subunit B [Pseudomonas cichorii]
 gi|11078907|dbj|BAB17458.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIFLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078803|dbj|BAB17406.1| DNA gyrase subunit B [Pseudomonas cichorii]
          Length = 296

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIFLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLDGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|209408292|emb|CAP19831.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 292

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 151/294 (51%), Positives = 209/294 (71%), Gaps = 3/294 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F
Sbjct: 1   VSGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHF 59

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
            PSS+ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+Y
Sbjct: 60  KPSSETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+ +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSA
Sbjct: 118 LNTNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + SY+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ 
Sbjct: 178 LTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 237

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           VE  +      +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 VEQEMGKYFGDFLLEHPGEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 291


>gi|324962668|gb|ADY62436.1| gyrase subunit B [Frankia sp. BMG5.14]
          Length = 277

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 108/278 (38%), Positives = 148/278 (53%), Gaps = 22/278 (7%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ +SY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+ +   + N     PL  T      TGT +TF     IF    
Sbjct: 61  VVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQT-GTSKKTGTTITFWADPTIFETTT 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREITMFY 225
           + Y+TL  RL+E++FLN  + I+L D+R                       EP E+T  Y
Sbjct: 120 YKYETLFRRLQEMAFLNKGLSITLRDERGKATAPATTTEEPTEAAKPVEAVEPTEVTFKY 179

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             G+  FV +L+  K  + +S I ++     I  +LAM+WN GY+E+V  F N I   +G
Sbjct: 180 DNGLVDFVGHLNATKDAVHRSVISLESKGTGIEAELAMQWNSGYNESVYTFANTINTHEG 239

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           GTH  G R+ALT  + +Y +     K  K      D R
Sbjct: 240 GTHEEGFRAALTSAVNAYAKDQNLLKPFKAGSKNSDER 277


>gi|11078731|dbj|BAB17370.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078735|dbj|BAB17372.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078787|dbj|BAB17398.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078911|dbj|BAB17460.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078913|dbj|BAB17461.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|146150869|gb|ABQ02691.1| DNA gyrase subunit B [Pseudomonas avellanae]
 gi|146150871|gb|ABQ02692.1| DNA gyrase subunit B [Pseudomonas avellanae]
 gi|315064843|emb|CBX20957.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae]
          Length = 296

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|126438284|ref|YP_001073975.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. JLS]
 gi|126238084|gb|ABO01485.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. JLS]
          Length = 677

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 147/672 (21%), Positives = 256/672 (38%), Gaps = 54/672 (8%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYA-DIITV 66
           SY A  I  L  +   + RP++ +G     + L     E++DNAI+E +   +    +T+
Sbjct: 2   SYTAADITELDDVQHTRLRPAVNLGLDVLNTALR----ELIDNAIEEVADPSHGGSAVTI 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS--GGLHGVG 124
           TL+ DGS  V+D+GRG+P D     G +     +    AGGKF+  +   S   GL+G+G
Sbjct: 58  TLHDDGSVGVADDGRGLPVDSDPVNGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGIG 117

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------------DNPLVVTGS-A 165
            +    +S+   + ++R G  Y  SF  G                       L  TG+  
Sbjct: 118 AAAAVFISARTDVTVRRAGKTYLQSFGRGYPGVFEGKDFDPDAPFTRADTQKLRGTGNRK 177

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----- 220
            +  GT V  L    +      +   +  R    + ++  V +S+ID+  P         
Sbjct: 178 PDVHGTTVRILFDPAVVPDSQIDIGEVLLRAHAAARMSPGVHLSVIDEGWPGDEVAPALL 237

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRI---QGS----RDNISIDLAMRWNDGYHENV 273
                  G +  +  +             +   +G     R       ++         V
Sbjct: 238 EPFTGPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPATV 297

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG--DDCREGFTSVLS 331
             F N +    GG+HL+     L+  +     +       K        D        + 
Sbjct: 298 AAFCNTVRTPGGGSHLTAAMKGLSEALADRASRMRDLGLAKGEEGPEAQDFAAVTALAVD 357

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL------EAKIIVKKVLDA 385
            + PD  + SQ K  + S  +   +   V   ++ W              K+ ++     
Sbjct: 358 TRAPDVAWDSQAKTAVSSRSLNVAMAPDVARSVTIWAANPANGDAVSLWTKLALESARAR 417

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSER-DPKKSELFLVEGDSAGGSAKQGRS 444
                A  R+R  ++ KG+    SLP KL    E      +ELFL EGDSA G+ K  R 
Sbjct: 418 RSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAARD 477

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
              QA  PL+GK  NV     +K  +  E  ++   LG G+ +D+ D    RY +I+  +
Sbjct: 478 ATFQAAFPLKGKPPNVYGFALNKARAKDEFDSIERILGCGV-RDNCDPELCRYDRILFAS 536

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DAD DG +I + L++ F      L+  G +Y+  PPL+ +  G    Y +DE   +  + 
Sbjct: 537 DADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAVA 596

Query: 565 NQSLSEEIE---LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
               + + +         G +  +D  N + D  +  + +   +P+  +  +   +  G 
Sbjct: 597 KMKATSKRKVEVQRNKGLGEMDADDFWNTVLDPQR--RTVIRVHPDDSENKLHHTLFGGP 654

Query: 622 FNCESDQEINVS 633
                    +V+
Sbjct: 655 PEGRRTWMADVA 666



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-DKIKITGPCS---LLDTIFSIGRK 732
           +  S I  F   Y+ +    +    L  L ++ +G  +I           +  + +  ++
Sbjct: 545 INSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAVAKMKATSKR 604

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792
            + +QR KGLGEM+A   W T L+P  R+++RV   D+   + L   L G   E RR ++
Sbjct: 605 KVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRVHPDDSE--NKLHHTLFGGPPEGRRTWM 662

Query: 793 QENSLPS---ALD 802
            + +      ALD
Sbjct: 663 ADVASRVDTTALD 675


>gi|307343810|emb|CBJ19510.1| gyrase B subunit [Micromonospora sp. GUI23]
          Length = 350

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 152/352 (43%), Positives = 226/352 (64%), Gaps = 8/352 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + N     PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGSVWRQHYTNSKP-GPLEK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFE 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGT
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 350


>gi|209408304|emb|CAP19837.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 294

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 155/297 (52%), Positives = 209/297 (70%), Gaps = 3/297 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G     +GTE+ 
Sbjct: 1   QVSGGLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLTAVGVTE-GSGTEIH 59

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           F PS D F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV+
Sbjct: 60  FRPSPDTFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERSAKE--ELFKYEGGLSAFVA 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+ +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RS
Sbjct: 118 YLNTNKTAVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++
Sbjct: 178 ALTRNLNNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 237

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
            VE  +      +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LP
Sbjct: 238 AVEQEMGKYFGDFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLP 294


>gi|62084080|dbj|BAD91447.1| DNA gyrase subunit B [Streptococcus equi subsp. equi]
 gi|62084082|dbj|BAD91448.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus]
 gi|110224964|dbj|BAE97471.1| DNA gyrase subunit B [Streptococcus equi]
 gi|110224966|dbj|BAE97472.1| DNA gyrase subunit B [Streptococcus equi]
          Length = 300

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 193/300 (64%), Gaps = 2/300 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              YKVSGGLHGVG SVVNALS+ L +R+ + G+I+   F  G + + L +     + TG
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGHIHYQEFRRGAVVDDLAII-GTTDVTG 59

Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F P  +IF+    F+Y  L  R++EL+FLN  ++IS+ DKR+   RE    Y+GGI
Sbjct: 60  TTVHFTPDPEIFTETTEFDYQVLAKRIQELAFLNRGLKISITDKRAGLEREEHFHYEGGI 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
            ++V++L+  K  +  +PI   G  + I++++AM++  GYHE V+ F NNI   +GGTH 
Sbjct: 120 GSYVAFLNDKKDVIFDTPIYSDGELEGITVEVAMQYTTGYHETVMSFANNIHTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R+ALTR I  Y +K+   K+++ ++ G+D REG T+V+S+K P+P+F  QTK KL +
Sbjct: 180 QGFRTALTRVINDYAKKAKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV  +     ++ L  +L E+P  A+ IV+K + AS  R AA+RAR++TR+K  L+I++
Sbjct: 240 SEVVKITNRLFSEALQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISN 299


>gi|115381568|gb|ABI96466.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
          Length = 323

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 194/326 (59%), Positives = 249/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + T T V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTSTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGG AKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|332272069|gb|AEE38718.1| DNA gyrase subunit beta [Aeromonas encheleia]
          Length = 308

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 176/310 (56%), Positives = 228/310 (73%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLEDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R          Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  RDGREMH--FCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + LS +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEFLLENPSDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|11078805|dbj|BAB17407.1| DNA gyrase subunit B [Pseudomonas cichorii]
          Length = 296

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIFLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078727|dbj|BAB17368.1| DNA gyrase subunit B [Pseudomonas sp.]
          Length = 296

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 212/299 (70%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G     TGTE+ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTIRREGKVWEQIYRHGVPQAPLTAMGETE-GTGTEIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFVSYL+
Sbjct: 60  SAETFKNIHFSWDILAKRLRELSFLNSGVGILLRDERTAKE--ELFKYEGGLSAFVSYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 TNKSAINQVFHFNVQREDGVGVEIALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +   +D REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVTTTVNDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078789|dbj|BAB17399.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078791|dbj|BAB17400.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078795|dbj|BAB17402.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078759|dbj|BAB17384.1| DNA gyrase subunit B [Pseudomonas fluorescens]
 gi|11078813|dbj|BAB17411.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078823|dbj|BAB17416.1| DNA gyrase subunit B [Pseudomonas marginalis]
          Length = 296

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|159576546|dbj|BAF92822.1| DNA gyrase subunit B [Virgibacillus sp. 2-10-1]
          Length = 328

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 138/332 (41%), Positives = 202/332 (60%), Gaps = 9/332 (2%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTE 172
           YKV GGLHGVG SVVNALS WL++ I REG+ Y   F N G     L   G+      T 
Sbjct: 1   YKVFGGLHGVGASVVNALSEWLEVTIHREGHTYFQRFENGGKPVGSLEKKGTTKKKGST- 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P   IF+   ++++TL  RLRE +FL   ++I L D R+ +  E       G++AF
Sbjct: 60  IHFKPDPGIFTTIVYDFETLSERLREAAFLLKGLKIQLSDLRNNQHEEYQF--PDGLKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+  K  L       +G +  I +D A ++NDGY E++L F N++  KDGGTH SG 
Sbjct: 118 VHYLNEEKDTLHPVVA-FEGEQQGIEVDFAFQFNDGYAESMLSFVNHVRTKDGGTHESGA 176

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSS 350
           R+A+TR    Y  ++   K+  +++ G D REGFTS++S+++P+   +F  QTK +L + 
Sbjct: 177 RTAITRTFNDYARRAGLLKEKDKNLEGTDIREGFTSIVSVRVPEEKLQFEGQTKGRLGTP 236

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIA 408
           E RS V++ V++ LS +LEE+P  + +++KK + A   R+AAR+AR+   T +K      
Sbjct: 237 EARSAVDAIVSEKLSYFLEENPDVSGLLIKKAIKAKEAREAARKAREEARTGKKRKRKDT 296

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
            L GKL     ++PK++EL+LVEGDSAGGSAK
Sbjct: 297 ILSGKLTPAQSKNPKRNELYLVEGDSAGGSAK 328


>gi|11078753|dbj|BAB17381.1| DNA gyrase subunit B [Pseudomonas azotoformans]
 gi|11078761|dbj|BAB17385.1| DNA gyrase subunit B [Pseudomonas synxantha]
          Length = 296

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078799|dbj|BAB17404.1| DNA gyrase subunit B [Pseudomonas cichorii]
          Length = 296

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIFLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078783|dbj|BAB17396.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|332272167|gb|AEE38767.1| DNA gyrase subunit beta [Aeromonas bivalvium]
 gi|332272169|gb|AEE38768.1| DNA gyrase subunit beta [Aeromonas bivalvium]
          Length = 308

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 181/310 (58%), Positives = 233/310 (75%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PSS IFS   F+YD L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSSTIFSDTLFHYDILAKRLRELSFLNSGVSIRLEDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|164456623|dbj|BAF97804.1| gyrase B subunit [Photobacterium lipolyticum]
          Length = 253

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 133/254 (52%), Positives = 179/254 (70%), Gaps = 3/254 (1%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  ++L I R G I+   + +G+ D PL V G   + TG
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTINRHGYIHHQIYHHGVPDAPLAVIGET-DKTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           T + F PS D F+   F+Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI 
Sbjct: 60  TRIRFWPSEDTFTNVVFHYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGIR 118

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           AFV +L+R+K P+          R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG+HL
Sbjct: 119 AFVEHLNRNKTPIHSKVFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGSHL 178

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           +G R ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 179 AGFRGALTRTLNTFMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 238

Query: 350 SEVRSVVESFVNDG 363
           SEV+  VES + + 
Sbjct: 239 SEVKPAVESAMGEK 252


>gi|307343846|emb|CBJ19528.1| gyrase B subunit [Micromonospora sp. SG8]
          Length = 350

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 151/353 (42%), Positives = 227/353 (64%), Gaps = 8/353 (2%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           + + I + G+++   + N    +PL   G   + TG+ V+F P  D+F   DF++ T+  
Sbjct: 1   MFVEIHKSGSVWRQHYTNSKP-SPLEK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYR 58

Query: 195 RLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           RL+E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ + 
Sbjct: 59  RLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVE 118

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
            +   + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y      
Sbjct: 119 FEAEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK- 177

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
             K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W +
Sbjct: 178 LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFD 237

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+
Sbjct: 238 RNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFI 297

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALG
Sbjct: 298 VEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 350


>gi|89143184|emb|CAJ57489.1| DNA gyrase subunit B [Microbacterium foliorum]
          Length = 365

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 148/366 (40%), Positives = 219/366 (59%), Gaps = 20/366 (5%)

Query: 137 LRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQH 194
           + +K++G ++  SF +G +    L   G A ++TGT +TF P ++IF+   DF YDTL+ 
Sbjct: 1   VEVKQKGFVWRHSFADGGVPQQKLEK-GEASDETGTSITFWPDAEIFTETTDFEYDTLRT 59

Query: 195 RLRELSFLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFVSY--LDRH 239
           R ++++FLN  ++I L D+R                       Y+ G+  +V Y    RH
Sbjct: 60  RFQQMAFLNKGLRIELSDERPKSAYEVEVDGQATLTQPNDVFLYERGLVDYVEYLNKARH 119

Query: 240 KKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            + +    I  +       IS+++AM+W   Y ENV  + N I   +GGTH  G R+ALT
Sbjct: 120 AEVVNDEIIAFESEDTQRKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALT 179

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  Y   +   K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+
Sbjct: 180 TLVNKYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQ 239

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D L  W   +P++AK +++K +DA+  R AAR+AR+  RRK V + A++P KL DC
Sbjct: 240 KVVGDQLGDWFGRNPIQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           + +DP  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L+++E+  +
Sbjct: 300 TSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALANKEVQAM 359

Query: 478 ITALGT 483
           I A GT
Sbjct: 360 IQAFGT 365


>gi|11078739|dbj|BAB17374.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078767|dbj|BAB17388.1| DNA gyrase subunit B [Pseudomonas ficuserectae]
 gi|11078781|dbj|BAB17395.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078837|dbj|BAB17423.1| DNA gyrase subunit B [Pseudomonas savastanoi]
 gi|11078849|dbj|BAB17429.1| DNA gyrase subunit B [Pseudomonas savastanoi]
 gi|11078865|dbj|BAB17437.1| DNA gyrase subunit B [Pseudomonas savastanoi]
 gi|11078867|dbj|BAB17438.1| DNA gyrase subunit B [Pseudomonas savastanoi]
 gi|11078869|dbj|BAB17439.1| DNA gyrase subunit B [Pseudomonas savastanoi]
 gi|11078899|dbj|BAB17454.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078901|dbj|BAB17455.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078903|dbj|BAB17456.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|146150875|gb|ABQ02694.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
 gi|315064863|emb|CBX20967.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
 gi|315064867|emb|CBX20969.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
 gi|317447073|emb|CBX24520.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
 gi|317447075|emb|CBX24521.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
          Length = 296

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078847|dbj|BAB17428.1| DNA gyrase subunit B [Pseudomonas marginalis]
          Length = 296

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 213/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SDETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078889|dbj|BAB17449.1| DNA gyrase subunit B [Pseudomonas fluorescens]
 gi|11078915|dbj|BAB17462.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 296

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 213/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SEETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078733|dbj|BAB17371.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 217/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIFLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K+LDA+  R+AAR+AR++TRRKG LDIA+LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIAALPGKLAD 296


>gi|11078747|dbj|BAB17378.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078769|dbj|BAB17389.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 156/299 (52%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|321117346|dbj|BAJ72150.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 178/336 (52%), Positives = 241/336 (71%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGFSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++ VEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYXVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI P++GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKXQAIPPVKGKILNVEKTRFDKMLASPEG 333


>gi|11078785|dbj|BAB17397.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078905|dbj|BAB17457.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078909|dbj|BAB17459.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIMLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNEVFHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|110084492|gb|ABG49403.1| DNA gyrase subunit beta [Aeromonas jandaei]
          Length = 305

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 171/308 (55%), Positives = 224/308 (72%), Gaps = 3/308 (0%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RL
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D 
Sbjct: 60  RELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +
Sbjct: 118 IGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSA 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AK
Sbjct: 178 ASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAG
Sbjct: 238 IVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 297

Query: 437 GSAKQGRS 444
           GSAKQGR+
Sbjct: 298 GSAKQGRN 305


>gi|321117356|dbj|BAJ72155.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 174/336 (51%), Positives = 237/336 (70%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGXSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS E +  VE  +N+ L  +L EHP + KI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEXKLAVEQQMNELLFEYLLEHPGDXKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RA + TR KG LD+A LPGKLADC E DP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAPEXTRCKGALDLAGLPGKLADCQEXDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+NQAJ P++GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKNQAJPPVKGKILNVEKTRFDKMLASPEG 333


>gi|145640541|ref|ZP_01796125.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|145275127|gb|EDK14989.1| DNA gyrase subunit B [Haemophilus influenzae 22.4-21]
          Length = 141

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 76/140 (54%)

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723
           +     G+   + L    +           + ++         +I       +      +
Sbjct: 2   ITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKVQPVRSFEQAV 61

Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           + +    RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA  AD LF+ LMGD
Sbjct: 62  EWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAADQLFTTLMGD 121

Query: 784 EVEPRREFIQENSLPSALDI 803
           EVEPRREFI+ N+L + LD+
Sbjct: 122 EVEPRREFIELNALRANLDV 141


>gi|11078777|dbj|BAB17393.1| DNA gyrase subunit B [Pseudomonas tolaasii NCPPB 2192]
 gi|11078779|dbj|BAB17394.1| DNA gyrase subunit B [Pseudomonas tolaasii]
 gi|11078829|dbj|BAB17419.1| DNA gyrase subunit B [Pseudomonas tolaasii]
          Length = 296

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078861|dbj|BAB17435.1| DNA gyrase subunit B [Pseudomonas marginalis]
          Length = 296

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIILKDERSAKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|307343848|emb|CBJ19529.1| gyrase B subunit [Micromonospora sp. SG10]
          Length = 352

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 155/352 (44%), Positives = 228/352 (64%), Gaps = 8/352 (2%)

Query: 139 IKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRE 198
           I + G ++   + N    +PL   G A + TG+ V+F P  D+F   DF++ T+  RL+E
Sbjct: 1   IHKSGTVWRQHYTNSKP-SPLEK-GEATDRTGSAVSFWPDPDVFETVDFDFQTIYRRLQE 58

Query: 199 LSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
           ++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +  
Sbjct: 59  MAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFEAE 118

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
            + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        K 
Sbjct: 119 EEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LLKG 177

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +P 
Sbjct: 178 DEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNPA 237

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGD
Sbjct: 238 EAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGD 297

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           SAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 298 SAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 349


>gi|156536666|gb|ABU80437.1| gyrase B [Photorhabdus sp. H3086]
          Length = 318

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 175/321 (54%), Positives = 235/321 (73%), Gaps = 4/321 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +   V G     TGT V F PS D F +  +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSSPKVVGETE-QTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV +L+++K P+  +       +D I ++ A
Sbjct: 60  NSGVSIRLLDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEAA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           ++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 LQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQG 297

Query: 443 RSRENQAILPLRGKILNVERA 463
           R+R+NQAILPL+GKILNV  A
Sbjct: 298 RNRKNQAILPLKGKILNVGEA 318


>gi|11078797|dbj|BAB17403.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 156/299 (52%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKYKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078821|dbj|BAB17415.1| DNA gyrase subunit B [Pseudomonas caricapapayae]
 gi|11078825|dbj|BAB17417.1| DNA gyrase subunit B [Pseudomonas caricapapayae]
 gi|11078839|dbj|BAB17424.1| DNA gyrase subunit B [Pseudomonas caricapapayae]
 gi|11078855|dbj|BAB17432.1| DNA gyrase subunit B [Pseudomonas amygdali]
 gi|11078857|dbj|BAB17433.1| DNA gyrase subunit B [Pseudomonas amygdali]
 gi|11078879|dbj|BAB17444.1| DNA gyrase subunit B [Pseudomonas amygdali]
          Length = 296

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|54125541|gb|AAV30537.1| gyrase B [Enterobacter cloacae]
          Length = 299

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 163/300 (54%), Positives = 218/300 (72%), Gaps = 4/300 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG   + TGT V F PS + 
Sbjct: 2   GVGVSVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDT-DKTGTMVRFWPSLET 60

Query: 182 FSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F+   +F YD L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K
Sbjct: 61  FTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR +
Sbjct: 119 TPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +
Sbjct: 179 NAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           N+ LS +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ER
Sbjct: 239 NELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQER 298


>gi|332272063|gb|AEE38715.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|332272065|gb|AEE38716.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|332272071|gb|AEE38719.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|332272073|gb|AEE38720.1| DNA gyrase subunit beta [Aeromonas encheleia]
          Length = 308

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 175/310 (56%), Positives = 227/310 (73%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLEDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R          Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  RDGREMH--FCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|244537688|emb|CAX15420.1| gyrase B [Micromonospora sp. GUI15]
          Length = 344

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 146/345 (42%), Positives = 216/345 (62%), Gaps = 7/345 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I ++GN++   + N     PL   G   N +G+ V+F P   IF   +F ++T+  RL
Sbjct: 2   LEIHKDGNVWRQQYHNSKP-TPLEK-GETTNLSGSSVSFWPDPTIFETVEFTFETIYRRL 59

Query: 197 RELSFLNSSVQISLI----DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           +E++FLN  + I L      +   +PRE+T  YKGGI  FV +L+  K P+ ++ +    
Sbjct: 60  QEMAFLNRGLTIQLRDERVQEEDGKPREVTFCYKGGIADFVRHLNASKSPIHKTVVEFGA 119

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
             + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT ++  Y        K
Sbjct: 120 EEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSEVNRYGTDKK-LLK 178

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +P
Sbjct: 179 GDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNP 238

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAK+I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEG
Sbjct: 239 AEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEG 298

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           DSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  L
Sbjct: 299 DSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQAL 343


>gi|307343764|emb|CBJ19487.1| gyrase B subunit [Micromonospora coriariae]
          Length = 348

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 152/351 (43%), Positives = 223/351 (63%), Gaps = 8/351 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + N    +PL   G A + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 1   VEIHKSGSVWRQHYTNSKP-SPLEK-GEATDLTGSAVSFWPDPDVFETIDFDFQTIYRRL 58

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN  + I L+D+R       + RE+T  Y GGI  FV +L+  K P+ ++ +   
Sbjct: 59  QEMAFLNRGITIHLLDERVAEDEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVVEFG 118

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G RSALT  +  Y        
Sbjct: 119 AEEEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 178 KGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 238 PAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALG
Sbjct: 298 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 348


>gi|11078741|dbj|BAB17375.1| DNA gyrase subunit B [Pseudomonas marginata]
 gi|11078743|dbj|BAB17376.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078817|dbj|BAB17413.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078827|dbj|BAB17418.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078831|dbj|BAB17420.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 296

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|219687685|dbj|BAH09354.1| gyrase B subunit [Photobacterium aquimaris]
 gi|219687687|dbj|BAH09355.1| gyrase B subunit [Photobacterium aquimaris]
 gi|219687689|dbj|BAH09356.1| gyrase B subunit [Photobacterium aquimaris]
 gi|219687691|dbj|BAH09357.1| gyrase B subunit [Photobacterium aquimaris]
 gi|219687693|dbj|BAH09358.1| gyrase B subunit [Photobacterium aquimaris]
 gi|219687695|dbj|BAH09359.1| gyrase B subunit [Photobacterium aquimaris]
          Length = 268

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 140/266 (52%), Positives = 192/266 (72%), Gaps = 4/266 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  ++L I R+G+I++ ++ +G+ D PL V G   + TGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVELTINRKGHIHQQTYQHGVPDAPLAVVGDT-DKTGTRLRF 59

Query: 176 LPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS + F +  +F+Y+ L  RLRELSFLNS V I LID+R  E ++    Y+GGI AFV 
Sbjct: 60  WPSEETFTNNIEFHYEILAKRLRELSFLNSGVSIKLIDER-EEGKQDHFMYEGGIRAFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +L+R+K P+ Q        R++ I++++AM+WNDG+ E V CFTNNIPQ+DGGTHL+G R
Sbjct: 119 HLNRNKTPIHQKVFHFDSEREDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHLAGFR 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + S+++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+
Sbjct: 179 GALTRTLNSFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVK 238

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIV 379
           S VES +N+  + +L E P +AKII 
Sbjct: 239 SAVESAMNEKFAEFLLESPADAKIIC 264


>gi|115381578|gb|ABI96471.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
          Length = 323

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 193/326 (59%), Positives = 248/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT   F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMGRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DG THL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGVTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           + RRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MIRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|309804902|ref|ZP_07698964.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners LactinV 09V1-c]
 gi|309809735|ref|ZP_07703589.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308165841|gb|EFO68062.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners LactinV 09V1-c]
 gi|308169914|gb|EFO71953.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 355

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 161/304 (52%), Positives = 212/304 (69%), Gaps = 2/304 (0%)

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H SG ++ALTR +  Y  K+   K +  ++ G+D REG T+V+SIK P+P+F  QTK K
Sbjct: 1   MHESGFKTALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTK 60

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L +S+ R+ V+   +D  S +L E+P   + IV+K   A+  R AA+RAR++TR+K  L+
Sbjct: 61  LGNSDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLE 120

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
           IA+LPGKLAD +  DPK SELF+VEGDSAGGSAKQGRSR  QAILP+RGKILNVE+A  D
Sbjct: 121 IANLPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 180

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L++QEI T+ TALGTG G D FDINK RYHK+IIMTDADVDGAHIRTLLLT F+R M 
Sbjct: 181 RILANQEIRTIFTALGTGFGAD-FDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMK 239

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585
            +I  G++YI +PPLY + +GK ++Y+  +E L DYL     S + I       G +   
Sbjct: 240 PMIKAGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPE 299

Query: 586 DLRN 589
            L  
Sbjct: 300 QLWE 303



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +QRYKGLGEM+  QLWETT+NP+ R L RV   DA  A++ F  LMG+EV PRREFI++N
Sbjct: 287 VQRYKGLGEMDPEQLWETTMNPENRRLDRVDPEDAEDAEEAFEMLMGNEVGPRREFIEQN 346

Query: 796 SLPS-ALD 802
           +     LD
Sbjct: 347 AKYVENLD 354


>gi|66271254|gb|AAY43840.1| DNA gyrase subunit B [Vibrio sp. PIZ 9824]
          Length = 286

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 149/287 (51%), Positives = 210/287 (73%), Gaps = 3/287 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGV VSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F 
Sbjct: 1   SGGLHGVRVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L
Sbjct: 60  PSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           + +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A
Sbjct: 119 NTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + S+++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 179 LTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 238

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 239 VESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRK 285


>gi|315064847|emb|CBX20959.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae]
 gi|315064851|emb|CBX20961.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae]
 gi|315064855|emb|CBX20963.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae]
 gi|315064859|emb|CBX20965.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae]
          Length = 296

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 156/299 (52%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078815|dbj|BAB17412.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078819|dbj|BAB17414.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078871|dbj|BAB17440.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078873|dbj|BAB17441.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078875|dbj|BAB17442.1| DNA gyrase subunit B [Pseudomonas marginalis]
          Length = 296

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078749|dbj|BAB17379.1| DNA gyrase subunit B [Pseudomonas mucidolens]
          Length = 296

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMTIVGDSE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFRYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078887|dbj|BAB17448.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 296

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 156/299 (52%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKVVGESE-TTGTQIHFRP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SDETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|209407292|emb|CAP72531.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 291

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 151/294 (51%), Positives = 210/294 (71%), Gaps = 3/294 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G    D+GT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELVLTIRREGKVWEQIYCHGVPQAPLAAVGETE-DSGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+
Sbjct: 60  SSETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERNAKE--ELFKYEGGLSAFVAYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 TNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
             +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LP
Sbjct: 238 QEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLP 291


>gi|11078729|dbj|BAB17369.1| DNA gyrase subunit B [Marinobacterium stanieri]
          Length = 296

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 215/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALSS LKL I+R G ++E  + +G+ + PL + G   + TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSSDLKLTIRRAGQVHEQIYHHGVPEEPLKIVGET-DLTGTIVRFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F YD L  RLRELSFLNS V+I L D+RS   RE    Y+GG+ AFV +L+
Sbjct: 60  SEETFTNIQFQYDILAKRLRELSFLNSGVRIRLKDERSG--REEVFEYEGGLAAFVEFLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           ++K P+ +         + + ++++M+WND + E++ CF NNIPQ+DGGTHLSG R+ALT
Sbjct: 118 QNKSPVNKIFHFNAMHENGVGVEVSMQWNDSFQESLHCFANNIPQRDGGTHLSGFRTALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +K  K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RCLNNYIESEQLNKTGKVSTSGDDSREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +   L+ +L E+P +AK +V+K++DA+  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 238 QMMGQFLNEYLLENPQDAKAVVQKMIDAARAREAARKAREMTRRKGALDVAGLPGKLAD 296


>gi|170178300|gb|ACB10197.1| DNA gyrase subunit B [Kribbella lupini]
          Length = 369

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 168/369 (45%), Positives = 239/369 (64%), Gaps = 9/369 (2%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----EPREITM 223
           TGT +TF PS D+F    ++Y+TL  R RE +FLN  +++ + D+R       +P E++ 
Sbjct: 2   TGTTITFWPSPDVFETTVYSYETLSTRFREYAFLNKGLELVIRDERPDHTEDGKPVEMSF 61

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
            Y  G+  +V YL   ++ + Q+ I  + +   D++S+++AM+W+  + E+V  F N I 
Sbjct: 62  KYDDGLVDYVKYLTGIRETVHQNVIAFEAAQGDDSLSLEVAMQWSGSFQESVHTFANAIN 121

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K+ +P+F  
Sbjct: 122 THEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLGNPQFEG 181

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLTR 400
           QTK KL ++EV+  V+  VND L AW E++P E + I+ K    AS    A +       
Sbjct: 182 QTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPQEGREIIRKATAAASARLAARKARDLARN 241

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG+L    LPGKL+DC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILNV
Sbjct: 242 RKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILNV 301

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR DK+L + E+  +I+ALGTGI +D FD  KLRYHKI+IM DADVDG HIRTLLLT 
Sbjct: 302 EKARIDKVLQNNEVQAIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQHIRTLLLTL 360

Query: 521 FFRQMPSLI 529
            FR M  LI
Sbjct: 361 LFRFMRPLI 369


>gi|307343818|emb|CBJ19514.1| gyrase B subunit [Micromonospora sp. GUI37]
          Length = 348

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 151/351 (43%), Positives = 222/351 (63%), Gaps = 8/351 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I ++G ++   +      +PL   G   + TG+ V F P  D+F   DF++ T+  RL
Sbjct: 1   VEIHKDGFVWRQQYTASKP-SPLDK-GETTDRTGSAVAFWPDPDVFETVDFDFQTIYRRL 58

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN  + I L+D+R PE      RE+T  YKGGI  FV +L+  K P+ ++ +   
Sbjct: 59  QEMAFLNRGLTIHLLDERVPEDEDGRQREVTFCYKGGIADFVRHLNASKNPIHKTVVEFF 118

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
           G  + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        
Sbjct: 119 GEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTTLVNKYGT-EKKLL 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +
Sbjct: 178 KADEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 238 PAEAKVIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALG
Sbjct: 298 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 348


>gi|307343804|emb|CBJ19507.1| gyrase B subunit [Micromonospora sp. GUI14]
          Length = 349

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 150/351 (42%), Positives = 225/351 (64%), Gaps = 8/351 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + +     PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGSVWRQHYTHSKP-GPLEK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFE 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALG
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 349


>gi|11078793|dbj|BAB17401.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 156/299 (52%), Positives = 216/299 (72%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|332272079|gb|AEE38723.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 308

 Score =  237 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 179/310 (57%), Positives = 232/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IFS   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR +  Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNHYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|288562960|pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co-
           Complexed With Inhibitor
 gi|288562961|pdb|3G75|B Chain B, Crystal Structure Of Staphylococcus Aureus Gyrase B Co-
           Complexed With Inhibitor
 gi|288562962|pdb|3G7B|A Chain A, Staphylococcus Aureus Gyrase B Co-Complex With Inhibitor
 gi|288562963|pdb|3G7B|B Chain B, Staphylococcus Aureus Gyrase B Co-Complex With Inhibitor
          Length = 184

 Score =  237 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 83/208 (39%), Positives = 118/208 (56%), Gaps = 26/208 (12%)

Query: 20  GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDN 79
           GL+AV+KRP MYIG T  E GLHH+++E++DN+IDE+L GYA+ I V +  D    V+DN
Sbjct: 1   GLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDN 59

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+ ++ G  A EVI+T                        SVVNALS  L++ +
Sbjct: 60  GRGIPVDIQEKMGRPAVEVILT-----------------------SSVVNALSQDLEVYV 96

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRE 198
            R   IY  ++  G+    L   G   + TGT + F    +IF+    +NY+TLQ R+RE
Sbjct: 97  HRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRE 155

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYK 226
           L+FLN  +QI+L D+R  E      ++ 
Sbjct: 156 LAFLNKGIQITLRDERDEENVREDSYHY 183


>gi|327197937|ref|YP_004306254.1| putative DNA gyrase subunit B-topoisomerase [Lactococcus phage 949]
 gi|306009257|gb|ADM73652.1| putative DNA gyrase subunit B-topoisomerase [Lactococcus phage 949]
          Length = 655

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 151/663 (22%), Positives = 274/663 (41%), Gaps = 42/663 (6%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD-IITVTLNMD 71
           + I+ L   D  +++ +++ G  D      H + E+L NA DE +  + +  ITV L+ D
Sbjct: 7   EKIRKLSNRDQAREKIAVWYGSADN---YQHGLKELLANATDEIINNFEEGTITVKLSED 63

Query: 72  GS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL----HGVGVS 126
           GS  TV+D GRGIP    + +GI   E++   L AG K+      V+ G     +GVG +
Sbjct: 64  GSTVTVTDTGRGIPISG-ETDGIPNYELLFLTLFAGTKYGDSG--VTNGTYTGSNGVGTT 120

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           V+N  S   ++    +G  Y + F NG      +      +  GT VTF     +++   
Sbjct: 121 VLNYTSVLFEVTSIIKGVKYHIKFTNGGEVTEDLTEEKTSDIDGTTVTFSLDPTVYTKTI 180

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSP--------EPREITMFYKGGIEAFVSYLDR 238
           F  + ++      +  ++ + +  I   +         +     +         V     
Sbjct: 181 FKDEDVREIAHRYAVSSNKITVDYIHGETELTYHYTDLKEYYSELTSAVNTSGIVFGDLV 240

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             +  + S      +       L++  +         + N     +GG    G+ + +  
Sbjct: 241 EYQDTITSNQHDVFTSHEELTSLSIALSTSTTPTQESYLNLNYLPNGGKINEGIINGIKL 300

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y   +    K   S    D  E F+ V  +   +  F++QTK    + E+   V  
Sbjct: 301 YVNKYCRANNLFPKKVNSFSDSDITESFSFVAVMFSNNVEFANQTK-FSTNKELYKEVAK 359

Query: 359 FVNDGLSAWLE-EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
                +    E E P   K I+  +L          + ++  ++K    + ++  ++   
Sbjct: 360 RRVTQILEVTEIEDPKNFKDIINHLLLVQKENTVNAKHKEKLKKKLTEKVDTMSNRIDKL 419

Query: 418 SER--DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF-DKMLSSQEI 474
            +     +++EL+L EGDSA GS    R  + QA +P+ GK LNVE+A   + +++++ I
Sbjct: 420 VDSRVHGEEAELYLAEGDSAHGSVVSARDSKFQASMPMGGKFLNVEKAMNIEDIVNNETI 479

Query: 475 GTLITALGTGI--GQ-----DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
             +I ALG GI  G+       FDI KLRY KII  +D D DGA I+ L++T F++ MP 
Sbjct: 480 MNVIKALGCGIDLGKKQKDLPKFDITKLRYGKIICASDEDPDGAQIQCLIITLFYKLMPE 539

Query: 528 LIHNGFLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
           +IH G LY+ + PL+ I  +  S+ Y   +E  ++ L  Q             G      
Sbjct: 540 IIHTGRLYLAQTPLFEIKLKDDSVLYAYTDEGRDEILKEQGSKVVQYTRAKGLGE----- 594

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646
               +D  +  +  +     +  +  IE+A  +     +       +    ++  LN   
Sbjct: 595 ----LDAHIMAETAMNPETRHLTRVTIEEAKHAEQAIVDWMGTNVDNRKLFISRNLNKFT 650

Query: 647 EKS 649
           ++ 
Sbjct: 651 KEG 653



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQL 750
           I + R+      +  +    D +         D I    G K +   R KGLGE++A  +
Sbjct: 541 IHTGRLYLAQTPLFEIKLKDDSVLYAYTDEGRDEILKEQGSKVVQYTRAKGLGELDAHIM 600

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
            ET +NP+TR L RV I +A  A+      MG  V+ R+ FI  N
Sbjct: 601 AETAMNPETRHLTRVTIEEAKHAEQAIVDWMGTNVDNRKLFISRN 645


>gi|89143210|emb|CAJ57502.1| DNA gyrase subunit B [Microbacterium saperdae]
          Length = 361

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 151/361 (41%), Positives = 216/361 (59%), Gaps = 20/361 (5%)

Query: 143 GNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           G ++  SF NG      L   G A ++TGT +TF P ++IF+    F+YDTL+ R ++++
Sbjct: 2   GFVWRHSFANGGAPQQKLEK-GEATDETGTTITFWPDAEIFTETIEFDYDTLRTRFQQMA 60

Query: 201 FLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFVSY--LDRHKKPLMQ 245
           FLN  ++I L D+R               +      FY+ G+  +V Y    RH + + +
Sbjct: 61  FLNKGLRIDLRDERPQSAYEIEVDGQTVSKQPGDVFFYERGLVDYVEYLNKVRHAEVVNE 120

Query: 246 SPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             I  +       IS+++AM+W   Y ENV  + N I   +GGTH  G R+ALT  +  Y
Sbjct: 121 EIIAFESEDIARKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLVNKY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
              +   K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+  V D 
Sbjct: 181 ARANNILKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVVGDQ 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  W + +P +AK I++K LDA+  R AAR+AR+  RRK V + A++P KL DC+ +DP 
Sbjct: 241 LGDWFDRNPTQAKNIIRKALDAATARLAARKARETARRKSVFESAAMPDKLKDCTSKDPS 300

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L ++E+  +I A GT
Sbjct: 301 ISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNKEVQAMIQAFGT 360

Query: 484 G 484
           G
Sbjct: 361 G 361


>gi|332272115|gb|AEE38741.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|332272119|gb|AEE38743.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|332272127|gb|AEE38747.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|332272129|gb|AEE38748.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|332272131|gb|AEE38749.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|332272135|gb|AEE38751.1| DNA gyrase subunit beta [Aeromonas bestiarum]
          Length = 308

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 231/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|332272085|gb|AEE38726.1| DNA gyrase subunit beta [Aeromonas tecta]
 gi|332272087|gb|AEE38727.1| DNA gyrase subunit beta [Aeromonas tecta]
 gi|332272089|gb|AEE38728.1| DNA gyrase subunit beta [Aeromonas tecta]
 gi|332272091|gb|AEE38729.1| DNA gyrase subunit beta [Aeromonas tecta]
 gi|332272093|gb|AEE38730.1| DNA gyrase subunit beta [Aeromonas tecta]
          Length = 308

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 178/310 (57%), Positives = 231/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IFS   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|307343814|emb|CBJ19512.1| gyrase B subunit [Micromonospora sp. GUI28]
          Length = 348

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 151/351 (43%), Positives = 222/351 (63%), Gaps = 8/351 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I ++G ++   +      +PL   G   + TG+ V F P  D+F   DF++ T+  RL
Sbjct: 1   VEIHKDGFVWRQQYTASKP-SPLDK-GETTDRTGSAVAFWPDPDVFETVDFDFQTIYRRL 58

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN  + I L+D+R PE      RE+T  YKGGI  FV +L+  K P+ ++ +   
Sbjct: 59  QEMAFLNRGLTIHLLDERVPEDEDGRQREVTFCYKGGIADFVRHLNASKNPIHKTVVEFF 118

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
           G  + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        
Sbjct: 119 GEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTTLVNKYG-GEKKLL 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +
Sbjct: 178 KADEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 238 PAEAKVIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALG
Sbjct: 298 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 348


>gi|281331932|emb|CAZ39961.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 277

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 137/278 (49%), Positives = 182/278 (65%), Gaps = 3/278 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  L + + + G  Y+  F NG     L          GT V 
Sbjct: 2   QVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRGTTVR 60

Query: 175 FLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS+  F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV
Sbjct: 61  FWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFV 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R
Sbjct: 120 EHLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFR 179

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR
Sbjct: 180 GALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVR 239

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             VE+     L  +L+E+P EAK I  K++DA+  R+A
Sbjct: 240 PAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREA 277


>gi|115381554|gb|ABI96459.1| gyrase B [Salmonella enterica subsp. enterica serovar Zanzibar]
          Length = 323

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 195/325 (60%), Positives = 249/325 (76%), Gaps = 4/325 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K +DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKFIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALG 482
           LNVE+ARFDKMLSSQE+ TLITAL 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALK 322


>gi|11078885|dbj|BAB17447.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 296

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|115381580|gb|ABI96472.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
          Length = 323

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 195/326 (59%), Positives = 249/326 (76%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I + +A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVKVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD RE   +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREALIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLITALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALGC 323


>gi|311992510|ref|YP_004009378.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Ac42]
 gi|298684293|gb|ADI96254.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Ac42]
          Length = 608

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 140/573 (24%), Positives = 228/573 (39%), Gaps = 71/573 (12%)

Query: 13  DSIQILKGLDAVKKRPSMYIGDT----------------DGESGLHHMIYEVLDNAIDES 56
           D I +L   +   ++P+MYIG T                +   GL  +I E++DN++DE+
Sbjct: 4   DKITMLTDREHALQKPAMYIGSTVIEPHERFVFGEYKTVEYVPGLIKIISELIDNSLDEA 63

Query: 57  LE---GYADIITVTLNMDGSCTVSDNGRGIPTD--LHKE-EGISAAEVIMTRLHAGGKFN 110
           +     YA+ I+V +    S T+ DNGRGIP D  +  E   I       TR  AG  F 
Sbjct: 64  IRTDFEYANKISVDITGT-SVTIKDNGRGIPQDNVITPEGITIPGPVAAWTRTKAGSNFG 122

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT- 169
             + + + G +GVG S+ N  S              ++     +    L V    G  T 
Sbjct: 123 NDATRKTIGTNGVGSSLANIFSKKFTGHTCNGKTTIQVDCSENM----LNVDWKTGVGTR 178

Query: 170 -GTEVTFLPSSDIFSVQ---DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            GT VT  P  + F V        D +  +L+ L+ +   ++IS                
Sbjct: 179 KGTTVTIEPDLERFGVTEIGKNEIDLIHDQLQTLAVIYPKIKISFNGT----------IL 228

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +G  + FV+  +     L      +             R  DG+    + F N +  K+G
Sbjct: 229 QGNFKKFVTQFEEDPIILESDTFSL----------ALGRSPDGFRH--VSFANGVHTKNG 276

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTK 344
           G H+  +   L+ ++ + +++       K  +     +E  T VL ++ M + RF SQTK
Sbjct: 277 GNHIEVIFDELSSELMNSIKRK-----YKIDITKARIKECVTMVLFVRDMVNMRFDSQTK 331

Query: 345 EKLVSSEVRSVVESFVN---DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401
           E+L S      V+S +N     L+    ++      I++ VL   +  D A   +     
Sbjct: 332 ERLTSP--MGEVKSHLNLDVKKLARMFLKNETVLMPIIEAVLARKLAADKAAETKANKAA 389

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           +       +   L      +   + LFL EGDSA G     R+R+     PLRGK  N  
Sbjct: 390 QKAKVAKHIKANLYGDQSAN---TTLFLTEGDSAIGYLLSTRNRDLHGGYPLRGKFKNTW 446

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
                +++ +QE   +    G  +G+ +    +  Y  I IMTDADVDG       L  F
Sbjct: 447 GDAPAQIMKNQEAFDICAITGLTLGEKA---EETYYKNIAIMTDADVDGTGSIYPTLLAF 503

Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           F   P L   G +  +K P++      + +   
Sbjct: 504 FSNWPELFEQGRIKFVKTPVWICENKSTKKQTW 536


>gi|332272067|gb|AEE38717.1| DNA gyrase subunit beta [Aeromonas encheleia]
          Length = 308

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 175/310 (56%), Positives = 226/310 (72%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLEDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R          Y+GGI+AFV Y+  +K P+          +D I +++AM+WND Y E V
Sbjct: 61  RDGREMH--FCYEGGIKAFVEYVCENKTPIYPKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + LS +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEFLLENPSDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|189164052|gb|ACD77136.1| FusA [Geobacter sp. Ply4]
          Length = 259

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 162/259 (62%), Positives = 207/259 (79%)

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTHL G ++ALTR + +Y   +  +K  K ++ G+D REG T+V+S+K+P P+F
Sbjct: 1   INTHEGGTHLIGFKAALTRTMNTYANTNNLAKNAKVAISGEDLREGLTAVISVKIPQPQF 60

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL +SEV+  VE+ +N+ L+ +LEE+P  AK I++K +DA+  R+AAR+ARDLT
Sbjct: 61  EGQTKTKLGNSEVKGYVETLMNEKLATYLEENPQVAKRILEKSIDAARAREAARKARDLT 120

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRKG L++ +LPGKLADC E+DP   ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILN
Sbjct: 121 RRKGALEVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILN 180

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+ARFDKM+SSQEI TLI ALGT IG+D FDI+KLRYH+II+MTDADVDG+HI TLLLT
Sbjct: 181 VEKARFDKMISSQEIRTLIAALGTSIGKDDFDISKLRYHRIIVMTDADVDGSHILTLLLT 240

Query: 520 FFFRQMPSLIHNGFLYIIK 538
           FFFRQM  L+  G+LYI +
Sbjct: 241 FFFRQMTELVERGYLYIAQ 259


>gi|332272075|gb|AEE38721.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
 gi|332272077|gb|AEE38722.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
 gi|332272081|gb|AEE38724.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
 gi|332272083|gb|AEE38725.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 308

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 179/310 (57%), Positives = 233/310 (75%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IFS   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|221126299|ref|XP_002165304.1| PREDICTED: similar to DNA topoisomerase IV subunit B [Hydra
           magnipapillata]
          Length = 350

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 171/332 (51%), Positives = 221/332 (66%), Gaps = 12/332 (3%)

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            +KK K  V GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR  VE  V   L+ +L
Sbjct: 1   MAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEDIVGKLLADYL 60

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE P +AKIIV K+++A+  R+AAR+ARD+TRRKGVLD   LPGKLADC E+DP   E++
Sbjct: 61  EERPNDAKIIVGKIIEAARAREAARKARDMTRRKGVLDGMGLPGKLADCQEKDPAMCEIY 120

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ- 487
           +VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLITALGTGIG+ 
Sbjct: 121 IVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALGTGIGKA 180

Query: 488 ------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
                 D F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+  G +YI +PPL
Sbjct: 181 GGSTGGDDFNVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPL 240

Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN-----DLRNFIDDALK 596
           Y +  GK   Y++    L+ YL+  +L           G   +      ++         
Sbjct: 241 YKVKSGKEELYLQGPAELDGYLLRIALVNASVYTGGPNGTTRQRYKGLGEMNPAQLWETT 300

Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628
           +D  ++          IE   +  +   +  +
Sbjct: 301 MDPTVRRLLRVQIDDAIEADRVFTMLMGDEVE 332



 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 11/112 (9%)

Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGR----------KGISMQRYKGLGEMNASQLWE 752
            +  +    +++ + GP  L   +  I             G + QRYKGLGEMN +QLWE
Sbjct: 239 PLYKVKSGKEELYLQGPAELDGYLLRIALVNASVYTGGPNGTTRQRYKGLGEMNPAQLWE 298

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           TT++P  R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L +  +D+
Sbjct: 299 TTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAGNIDV 350


>gi|11078745|dbj|BAB17377.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G ++E ++++G+   P+   G   + TGTE+ F P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKVWEQTYVHGVPQAPMRTVGDT-DKTGTEIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFQNIHFSWDILAKRLRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNAYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|170178302|gb|ACB10198.1| DNA gyrase subunit B [Kribbella sandramycini]
          Length = 370

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 166/370 (44%), Positives = 233/370 (62%), Gaps = 10/370 (2%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREIT 222
            GT VTF  + D+F    ++Y+TL  R RE +FLN  +++ + D+R         P E +
Sbjct: 2   NGTTVTFWANPDVFETTTYSYETLATRFREYAFLNKGLELVIRDERPDHVDDDGNPMEQS 61

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
             Y  G+  +V YL   ++ + +  I  + +   + +S+++A++W+  + E+V  F N I
Sbjct: 62  FKYDEGLVDYVKYLTGIRETVHRDVISFEAATVENTMSLEVALQWSGSFQESVHTFANAI 121

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K+ +P+F 
Sbjct: 122 NTHEGGTHEEGFRAALTSLVNSFGEDQGIIKKKEDRLTGDDIREGLTAIISVKLGEPQFE 181

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLT 399
            QTK KL ++EV+  V+  VND L AW E++P E K IV K    AS    A +      
Sbjct: 182 GQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPQEGKEIVRKATAAASARIAARKARDLAR 241

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
            RKG+L    LPGKLADC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILN
Sbjct: 242 NRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILN 301

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR DK+L + E+  +I+ALGTGI +D FD  KLRYHKI+IM DADVDG HIRTLLLT
Sbjct: 302 VEKARIDKVLQNNEVQAIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQHIRTLLLT 360

Query: 520 FFFRQMPSLI 529
             FR M  LI
Sbjct: 361 LLFRFMRPLI 370


>gi|11078883|dbj|BAB17446.1| DNA gyrase subunit B [Pseudomonas fluorescens]
 gi|11078893|dbj|BAB17451.1| DNA gyrase subunit B [Pseudomonas putida]
          Length = 296

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|307343770|emb|CBJ19490.1| gyrase B subunit [Micromonospora echinaurantiaca]
          Length = 344

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 146/345 (42%), Positives = 216/345 (62%), Gaps = 7/345 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G ++   + N     PL   G   N TG+ V F P   +F   DF++ T+  RL
Sbjct: 2   VEIHKSGFVWRQQYSNSKP-TPLEK-GETTNRTGSAVAFWPDPTVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           +E++FLN  + I L+D+R      +PRE+T  YKGGI  FV +L+  K P+ ++ +    
Sbjct: 60  QEMAFLNRGLTIHLLDERSADEEGKPREVTFLYKGGIADFVRHLNASKNPIHKTVVEFGA 119

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
             + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y  +     K
Sbjct: 120 EEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGAERK-LLK 178

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +P
Sbjct: 179 GDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRNP 238

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAKII++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEG
Sbjct: 239 AEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEG 298

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           DSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  L
Sbjct: 299 DSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQAL 343


>gi|11078841|dbj|BAB17425.1| DNA gyrase subunit B [Pseudomonas asplenii]
 gi|11078877|dbj|BAB17443.1| DNA gyrase subunit B [Pseudomonas asplenii]
          Length = 296

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 152/299 (50%), Positives = 213/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+R+ +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--EVFRYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTTVNQVFHFNIQREDGIGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+  VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKGAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078737|dbj|BAB17373.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078851|dbj|BAB17430.1| DNA gyrase subunit B [Pseudomonas corrugata]
 gi|11078859|dbj|BAB17434.1| DNA gyrase subunit B [Pseudomonas corrugata]
 gi|11078863|dbj|BAB17436.1| DNA gyrase subunit B [Pseudomonas corrugata]
          Length = 296

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|270160521|gb|ACZ63226.1| DNA gyrase subunit B [Aeromonas rivuli]
 gi|270210812|gb|ACZ63221.1| DNA gyrase subunit B [Aeromonas rivuli]
          Length = 308

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 183/310 (59%), Positives = 234/310 (75%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PSS IFS   ++YD L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSSTIFSDTLYHYDILAKRLRELSFLNSGVSIRLEDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFTTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + LS +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVERA
Sbjct: 299 KGKILNVERA 308


>gi|115381642|gb|ABI96503.1| gyrase B [Salmonella enterica subsp. enterica serovar Java]
          Length = 323

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 192/326 (58%), Positives = 247/326 (75%), Gaps = 4/326 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGD AGG AKQGR+R+N AILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDCAGGFAKQGRNRKNPAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALGT 483
           LNVE+ARFDKMLSSQE+ TLI ALG 
Sbjct: 298 LNVEKARFDKMLSSQEVATLIPALGC 323


>gi|115381476|gb|ABI96420.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 323

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 195/325 (60%), Positives = 250/325 (76%), Gaps = 4/325 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRYGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALG 482
           LNVE+ARFDKMLSSQE+ TLITAL 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALK 322


>gi|324962674|gb|ADY62439.1| gyrase subunit B [Frankia sp. BCU110345]
          Length = 277

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 109/278 (39%), Positives = 148/278 (53%), Gaps = 22/278 (7%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ +SY VSGGLHGVGVS
Sbjct: 1   TLVADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+ +   + N     PL  T      TGT +TF     IF    
Sbjct: 61  VVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQT-GTSKKTGTTITFWADPTIFETTT 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREITMFY 225
           + Y+TL  RL+E++FLN  + I+L D+R                       EP EIT  Y
Sbjct: 120 YKYETLFRRLQEMAFLNKGLSITLRDERGKATAPATAAEEPAEAAKPVEAVEPTEITFKY 179

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             G+  FV +L+  K  + +S I ++     I  +LAM+WN GY+E+V  F N I   +G
Sbjct: 180 DNGLVDFVGHLNATKDAVHRSVISLESKGTGIEAELAMQWNSGYNESVYTFANTINTHEG 239

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           GTH  G R+ALT  + +Y +     K  K      D R
Sbjct: 240 GTHEEGFRAALTSAVNAYAKDQNLLKPVKAGSKNSDER 277


>gi|62000042|emb|CAI72600.1| DNA gyrase subunit B [Pseudomonas sp. OX1]
          Length = 296

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 214/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|11078763|dbj|BAB17386.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. chlororaphis]
 gi|11078771|dbj|BAB17390.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. chlororaphis]
 gi|11078773|dbj|BAB17391.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. aureofaciens]
 gi|11078775|dbj|BAB17392.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. chlororaphis]
 gi|11078881|dbj|BAB17445.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 296

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 213/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+ CFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQREDGIGVEIALQWNDSFNENLQCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K+LDA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|307343856|emb|CBJ19533.1| gyrase B subunit [Micromonospora sp. SGA5]
          Length = 345

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 146/346 (42%), Positives = 216/346 (62%), Gaps = 8/346 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G ++   + N     PL   G + + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGFVWRQQYANSKP-TPLEK-GESTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN  + I L+D+R       + RE+T  Y GGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLNRGITIHLLDERVPEGEEGKIREVTFRYDGGIADFVRHLNASKNPMHKTVVEFD 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  L
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQAL 344


>gi|115381464|gb|ABI96414.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381550|gb|ABI96457.1| gyrase B [Salmonella enterica subsp. enterica serovar Heidelberg]
          Length = 323

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 195/325 (60%), Positives = 250/325 (76%), Gaps = 4/325 (1%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           L VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +
Sbjct: 1   LAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGK 59

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFT
Sbjct: 60  E--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFT 117

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP
Sbjct: 118 NNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDP 177

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+
Sbjct: 178 KFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 237

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 238 MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 297

Query: 458 LNVERARFDKMLSSQEIGTLITALG 482
           LNVE+ARFDKMLSSQE+ TLITAL 
Sbjct: 298 LNVEKARFDKMLSSQEVATLITALK 322


>gi|321117350|dbj|BAJ72152.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 181/336 (53%), Positives = 243/336 (72%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGXSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSXEVKSAVEQQMNELLXEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP   E++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFEIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASPEG 333


>gi|321117372|dbj|BAJ72163.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 178/336 (52%), Positives = 240/336 (71%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+ GGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRGGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+S VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI P +GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKKQAIPPXKGKILNVEKTRFDKMLASPEG 333


>gi|170178318|gb|ACB10206.1| DNA gyrase subunit B [Kribbella alba]
          Length = 370

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 166/369 (44%), Positives = 236/369 (63%), Gaps = 10/369 (2%)

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITM 223
           GT +TF  S D+F   +++Y+TL  R RE +FLN  +++ + D+R        +P E + 
Sbjct: 3   GTTITFWASPDVFETTNYSYETLSTRFREYAFLNKGLELVIRDERPDHIDEDGKPVEQSF 62

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
            Y  G+  +V YL   ++ + +  I  + +   D++S+++AM+W+  Y E+V  F N I 
Sbjct: 63  KYDDGLVDYVKYLTGIREAVHRDVIAFEAAQGEDSLSLEVAMQWSGSYQESVHTFANAIN 122

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  + S+ E     K+ +  + GDD REG T+++S+K+ +P+F  
Sbjct: 123 THEGGTHEEGFRAALTTLVNSFGEDQGMIKRKEDRLTGDDVREGLTAIISVKLGNPQFEG 182

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLTR 400
           QTK KL ++EV+  V+  VND L AW E++P E K I+ K    AS    A +       
Sbjct: 183 QTKTKLGNTEVKGFVQKVVNDKLGAWFEQNPQEGKEIIRKATAAASARIAARKARDLARN 242

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG+L    LPGKL+DC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILNV
Sbjct: 243 RKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILNV 302

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR DK+L + E+  +I+ALGTGI +D FD  KLRYHKI+IM DADVDG HIRTLLLT 
Sbjct: 303 EKARIDKVLQNNEVQAIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQHIRTLLLTL 361

Query: 521 FFRQMPSLI 529
            FR M  LI
Sbjct: 362 LFRFMRPLI 370


>gi|209408310|emb|CAP19840.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 291

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 150/293 (51%), Positives = 208/293 (70%), Gaps = 3/293 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFK 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PSS+ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL
Sbjct: 60  PSSETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSAL
Sbjct: 118 NTNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           E  +      +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 EQEMGKYFGDFLLEHPGEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 290


>gi|332272151|gb|AEE38759.1| DNA gyrase subunit beta [Aeromonas popoffii]
          Length = 308

 Score =  236 bits (603), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 176/310 (56%), Positives = 230/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
              + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  P--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSIEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|194277431|gb|ACF39381.1| GyrB [Streptomyces sp. FXJ52]
          Length = 272

 Score =  236 bits (603), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 111/272 (40%), Positives = 158/272 (58%), Gaps = 20/272 (7%)

Query: 46  YEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
            EV+DN++DE+L G+AD I VT+  DG   V D+GRGIP  +   EG  A EV++T LHA
Sbjct: 1   QEVVDNSVDEALAGHADKIDVTILADGGVRVVDDGRGIPVGIVPSEGKPALEVVLTVLHA 60

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF    Y VSGGLHGVGVSVVNALS+ + + +K +G+ +   +  G+   PL     A
Sbjct: 61  GGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLAR-HEA 119

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------- 215
             +TGT VTF    DIF   D++++TL  R +E++FLN  ++I+L D+R           
Sbjct: 120 TEETGTSVTFWADGDIFETTDYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADE 179

Query: 216 ------PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWN 266
                  E + +   Y+GGI  FV Y   R  + +  + I ++    +  +S+++AM+WN
Sbjct: 180 AGEDEKHEVKSVAYHYEGGIVDFVKYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQWN 239

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            GY E V  F N I   +GGTH  G R+ALT 
Sbjct: 240 GGYTEGVYSFANIIHTHEGGTHEEGFRAALTS 271


>gi|307343792|emb|CBJ19501.1| gyrase B subunit [Micromonospora viridifaciens]
          Length = 348

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 150/351 (42%), Positives = 222/351 (63%), Gaps = 8/351 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I ++G ++   + +     PL   G + + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 1   VEIHKDGYVWRQQYHHSKP-TPLEK-GESTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 58

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FL   + I L+D+R       +PRE+T  Y+GGI  FV +L+  K P+ ++ +   
Sbjct: 59  QEMAFLTRGLTIHLLDERVEDGEEGKPREVTFRYEGGIADFVRHLNASKNPIHRTVVEFG 118

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S ++AM+WN+ Y E+V  F NNI   +GGTH  G R+ALT  I  Y        
Sbjct: 119 AEEEGMSAEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVINRYGA-EKKLL 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  WL+ +
Sbjct: 178 KGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWLDRN 237

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 238 PAEAKTIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 297

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALG
Sbjct: 298 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 348


>gi|332272147|gb|AEE38757.1| DNA gyrase subunit beta [Aeromonas popoffii]
 gi|332272149|gb|AEE38758.1| DNA gyrase subunit beta [Aeromonas popoffii]
          Length = 308

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 231/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSIEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|332272137|gb|AEE38752.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|332272139|gb|AEE38753.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|332272141|gb|AEE38754.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|332272143|gb|AEE38755.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|332272145|gb|AEE38756.1| DNA gyrase subunit beta [Aeromonas piscicola]
          Length = 308

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 231/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPIIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|209408286|emb|CAP19828.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 291

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 150/294 (51%), Positives = 209/294 (71%), Gaps = 3/294 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+
Sbjct: 60  SAETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 TNKTAVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
             +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LP
Sbjct: 238 QEMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLP 291


>gi|209408298|emb|CAP19834.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 290

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 150/293 (51%), Positives = 208/293 (70%), Gaps = 3/293 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFK 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PSS+ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL
Sbjct: 60  PSSETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSAL
Sbjct: 118 NTNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           E  +      +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 EQEMGKYFGDFLLEHPGEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 290


>gi|170178294|gb|ACB10194.1| DNA gyrase subunit B [Kribbella swartbergensis]
          Length = 368

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 162/369 (43%), Positives = 235/369 (63%), Gaps = 9/369 (2%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-----ITM 223
            GT +TF  + DIF    ++Y+TL  R RE++FLN  ++I + D+R     +      + 
Sbjct: 1   HGTTITFWANPDIFETTTYSYETLSTRFREMAFLNKGLEIVIRDERPDHTEDGNPVEQSF 60

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281
            Y  G+  +V YL   ++ + +  I  + +   +++S+++A++W+  + E+V  F N I 
Sbjct: 61  KYDNGLVDYVKYLTGIRETVHRDVISFEAAQGDNDMSLEVALQWSSSFQESVHTFANAIN 120

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
             +GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K+ +P+F  
Sbjct: 121 THEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQFEG 180

Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLTR 400
           QTK KL ++EV+  V+  VND L AW E++P E + I+ K    AS    A +       
Sbjct: 181 QTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKATAAASARIAARKARDLARN 240

Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           RKG+L    LPGKLADC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILNV
Sbjct: 241 RKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILNV 300

Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
           E+AR DK+L + E+  +I+ALGTGI +D FD +KLRYHKI++M DADVDG HIRTLLLT 
Sbjct: 301 EKARIDKVLQNNEVQAIISALGTGIHED-FDEDKLRYHKIVLMADADVDGQHIRTLLLTL 359

Query: 521 FFRQMPSLI 529
            FR M  LI
Sbjct: 360 LFRFMRPLI 368


>gi|332272117|gb|AEE38742.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|332272121|gb|AEE38744.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 308

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 230/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV + VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVNTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|324962666|gb|ADY62435.1| gyrase subunit B [Frankia sp. NRRLB-16219]
          Length = 283

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 108/284 (38%), Positives = 148/284 (52%), Gaps = 28/284 (9%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ +SY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+ +   + N     PL  T      TGT +TF     IF    
Sbjct: 61  VVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQT-GTSKKTGTTITFWADPTIFETTT 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------------PEPR 219
           + Y+TL  RL+E++FLN  + I+L D+R                             EP 
Sbjct: 120 YKYETLFRRLQEMAFLNKGLSITLRDERGKATAPATNTVTVTVTEEPTEAAKPVEAVEPT 179

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
           E+T  Y  G+  FV +L+  K  + +S I ++     I  +LAM+WN GY+E+V  F N 
Sbjct: 180 EVTFKYDNGLVDFVGHLNATKDAVHRSVISLESKGTGIEAELAMQWNSGYNESVYTFANT 239

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           I   +GGTH  G R+ALT  + +Y +     K  K      D R
Sbjct: 240 INTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPVKAGSKNSDER 283


>gi|321117368|dbj|BAJ72161.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 179/336 (53%), Positives = 241/336 (71%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGXSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLV  EV+S VE  +N+ L  +L EH  +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVXXEVKSAVEQQMNELLXEYLLEHRGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+SQE 
Sbjct: 298 AKQGRNRKXQAIPPLKGKILNVEKTRFDKMLASQEG 333


>gi|324962672|gb|ADY62438.1| gyrase subunit B [Frankia sp. BCU110501]
          Length = 277

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 109/278 (39%), Positives = 148/278 (53%), Gaps = 22/278 (7%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ +SY VSGGLHGVGVS
Sbjct: 1   TLVADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+ +   + N     PL  T      TGT +TF     IF    
Sbjct: 61  VVNALSTRLDVEIQSDGHSWFQPYENSRPARPLAQT-GTSKKTGTTITFWADPTIFETTT 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREITMFY 225
           + Y+TL  RL+E++FLN  + I+L D+R                       EP EIT  Y
Sbjct: 120 YKYETLFRRLQEMAFLNKGLSITLRDERGKAPAPATAAEEPAEAAKPVEAVEPTEITFKY 179

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             G+  FV +L+  K  + +S I ++     I  +LAM+WN GY+E+V  F N I   +G
Sbjct: 180 DNGLVDFVGHLNATKDAVHRSVISLESKGTGIEAELAMQWNSGYNESVYTFANTINTHEG 239

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           GTH  G R+ALT  + +Y +     K  K      D R
Sbjct: 240 GTHEEGFRAALTSAVNAYAKDQNLLKPFKAGSKNSDER 277


>gi|209408300|emb|CAP19835.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 287

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 146/289 (50%), Positives = 205/289 (70%), Gaps = 3/289 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R+G ++E  + +G+   PL   G   + +GT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEELMLTIRRDGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFK 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PSS+ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL
Sbjct: 60  PSSETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSAL
Sbjct: 118 NTNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + SY+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           E  +      +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG L
Sbjct: 238 EQEMGKYFGDFLLEHPGEAKAVVGKMMDAARAREAARKAREMTRRKGAL 286


>gi|58465065|gb|AAW78428.1| DNA topoisomerase II beta subunit [Shewanella atlantica]
          Length = 318

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 172/321 (53%), Positives = 236/321 (73%), Gaps = 4/321 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGV VVNALS  L++  +R+G +YE  + +G+ + P+   G A  +TGTE+ F PSS+ F
Sbjct: 1   VGVFVVNALSHKLQMTFRRDGKLYEXFYTHGVPNEPIKAIGDAT-NTGTEIRFWPSSETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   F++D L  R+RELSFLNS V + L+D+R  + R+    Y GGI AFV YL+ +K P
Sbjct: 60  SDTLFHFDILAKRVRELSFLNSGVGVRLVDER--DNRDEFFKYDGGISAFVDYLNVNKTP 117

Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           + +        R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + 
Sbjct: 118 VNKEVFHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E+   +KK K    GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + 
Sbjct: 178 TYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMG 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L  +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+D
Sbjct: 238 EQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKD 297

Query: 422 PKKSELFLVEGDSAGGSAKQG 442
           P  SE+++VEGDSAGGSAKQG
Sbjct: 298 PAHSEIYIVEGDSAGGSAKQG 318


>gi|91093601|gb|ABE11594.1| GyrB [Escherichia coli]
          Length = 254

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 165/254 (64%), Positives = 211/254 (83%)

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V K++D
Sbjct: 1   GLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIID 60

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+
Sbjct: 61  AARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN 120

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
           R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMT
Sbjct: 121 RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 180

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DADVDG+HIRTLLLTFF+RQMP ++  G +YI +PPLY + +GK  QY+KD+E+++ Y I
Sbjct: 181 DADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQI 240

Query: 565 NQSLSEEIELFCDS 578
           + +L         S
Sbjct: 241 SIALDGATLHTNAS 254


>gi|197261009|gb|ACH56979.1| DNA gyrase subunit B [Acinetobacter venetianus]
          Length = 291

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 154/293 (52%), Positives = 196/293 (66%), Gaps = 3/293 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L I R G I+E  + +G    PL V G   + +GT   F PS   
Sbjct: 1   GVGVSVVNALSKKLHLTIHRAGQIHEQEYAHGDPQYPLKVVGET-DTSGTTARFWPSELT 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           FS   F+ D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K 
Sbjct: 60  FSQTIFSVDILARRLRELSFLNAGVRIVLRDERV--NLEHIYDYEGGLSEFVKYINEGKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L         + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + 
Sbjct: 118 HLNDIFHFTTDADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  VE  +N
Sbjct: 178 SYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
              SA+L E+P  AK I  K++DA+ VRDAAR+AR++TRRK  LDIA LPGKL
Sbjct: 238 KEFSAYLLENPQAAKSIAGKIIDAARVRDAARKAREMTRRKSALDIAGLPGKL 290


>gi|76786495|gb|ABA54993.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 273

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 132/273 (48%), Positives = 190/273 (69%), Gaps = 3/273 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V+
Sbjct: 178 RNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVK 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
             +    S +L E+P EAK++V K++DA+  R+
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARARE 270


>gi|1944015|dbj|BAA19519.1| subunit B protein of DNA gyrase [Comamonas terrigena]
          Length = 330

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 165/333 (49%), Positives = 222/333 (66%), Gaps = 26/333 (7%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------ 156
           F+Q SYKVSGGLHGVGVS VNALS  LKL ++R+G  +E+ F  G +             
Sbjct: 1   FDQNSYKVSGGLHGVGVSCVNALSVKLKLTVRRDGKTHEIDFSRGFVQNRLIEVVDGVEI 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215
           +P+ + G   +  GT+V FLP ++IF   + F+Y+ L  RLRELSFLN+ V+I L D+R 
Sbjct: 61  SPMRIIGDT-DKRGTKVHFLPDTEIFKENNEFHYEILAKRLRELSFLNNGVRIRLKDERD 119

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRW 265
            +         GG++ FV +++ +KK L  +P    GSR            I +++AM+W
Sbjct: 120 GKE--DDFSGAGGVQGFVKFINGNKKDLDITPFYATGSRPAESYGGIPGTEIGVEVAMQW 177

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           NDGY E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K  + GDD REG
Sbjct: 178 NDGYTEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYITDNDLAKKAKVEISGDDMREG 237

Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
             +VLS+K+P+P+FSSQTK+KLVSSEVR+ VE  V   L+ +LEE P +AK +  K++DA
Sbjct: 238 LCAVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKTLTEYLEEKPNDAKKLCGKIIDA 297

Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
           +  R+AARRAR++TRRKGVLD   LPGKLADC 
Sbjct: 298 ARAREAARRAREMTRRKGVLDGMGLPGKLADCQ 330


>gi|58415298|emb|CAH04907.1| DNA gyrase subunit B [Agromyces fucosus]
          Length = 349

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 145/350 (41%), Positives = 213/350 (60%), Gaps = 24/350 (6%)

Query: 139 IKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRE 198
           ++R+G+++  S+  G+ D PL       ++TGT  TF PS DIF   +F+Y+TL+ R ++
Sbjct: 1   VRRQGHVWRQSYTVGVPDAPLSK-DEPNDETGTTTTFWPSPDIFETVEFDYETLRARFQQ 59

Query: 199 LSFLNSSVQISLIDKRSPE-------------------PREITMFYKGGIEAFVSYLDRH 239
           ++FLN  ++I+L D+R                       R  T  Y+ G+  +V YL+R 
Sbjct: 60  MAFLNKGLRITLTDERVGHVEIDPDDTAANEADAATPGQRTDTFLYERGLVDYVEYLNRS 119

Query: 240 KKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           KK        I  +       I++++AM+W   Y E+V  + N I   +GGTH  G RSA
Sbjct: 120 KKSDVVNDEIISFETEDTERKIALEVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRSA 179

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y  +    K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++EV+S 
Sbjct: 180 LTTLVNKYAREKGIIKEKDENLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEVKSF 239

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+   +D L  W E +P +A+ I++K + A+  R AAR+AR+ TRRKG+L+   +PGKL 
Sbjct: 240 VQKVTSDQLGDWFERNPTQARDIIRKAIQAATARLAARKAREATRRKGLLESGGMPGKLK 299

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
           DCS +DP  SE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR 
Sbjct: 300 DCSSKDPSVSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARL 349


>gi|76786487|gb|ABA54992.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 271

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 133/274 (48%), Positives = 191/274 (69%), Gaps = 3/274 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+    + + G +   TGT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQERMKIVGDSE-TTGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SAETFKNIHFSWDVLAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
             +    S +L E+P EAK++V K++DA+  R+A
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREA 271


>gi|170178304|gb|ACB10199.1| DNA gyrase subunit B [Kribbella solani]
 gi|170178306|gb|ACB10200.1| DNA gyrase subunit B [Kribbella solani]
 gi|170178312|gb|ACB10203.1| DNA gyrase subunit B [Kribbella hippodromi]
          Length = 370

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 169/370 (45%), Positives = 239/370 (64%), Gaps = 10/370 (2%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------T 222
            GT +TF  S D+F    ++Y+TL  R RE +FLN  +++ + D+R     E       +
Sbjct: 2   NGTTITFWASPDVFETTTYSYETLATRFREYAFLNKGLELVIRDERPDHIDEDGKPLEQS 61

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
             Y  G+  +V YL   ++ + +  I  + +   D +S+++A++W+  + E+V  F N I
Sbjct: 62  FRYADGLVDYVKYLTGIRETVHRDVISFEAATADDTMSLEVALQWSGSFQESVHTFANAI 121

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K+ +P+F 
Sbjct: 122 NTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQFE 181

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LT 399
            QTK KL ++EV+  V+  VND L AW E++P E + I++K   A+  R AAR+ARD   
Sbjct: 182 GQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKASAAASARIAARKARDLAR 241

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
            RKG+L    LPGKLADC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILN
Sbjct: 242 NRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILN 301

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR DK+L + E+  +I+ALGTGI +D FD  KLRYHKI+IM DADVDG HIRTLLLT
Sbjct: 302 VEKARIDKVLQNNEVQAIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQHIRTLLLT 360

Query: 520 FFFRQMPSLI 529
             FR M  LI
Sbjct: 361 LLFRFMRPLI 370


>gi|170178298|gb|ACB10196.1| DNA gyrase subunit B [Kribbella koreensis]
          Length = 370

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 164/370 (44%), Positives = 234/370 (63%), Gaps = 10/370 (2%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREIT 222
            GT +TF  S D+F    ++Y+TL  R RE +FLN  +++ + D+R        +P E +
Sbjct: 2   NGTTITFWASPDVFETTTYSYETLATRFREYAFLNKGLELVIRDERPDHLDEDGKPLEQS 61

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
             Y  G+  +V YL   ++ + +  I  + +   D +S+++A++W+  + E+V  F N I
Sbjct: 62  FRYDDGLVDYVKYLTGIRETVHRDVISFEAAAADDTMSLEVALQWSGSFQESVHTFANAI 121

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K+ +P+F 
Sbjct: 122 NTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQFE 181

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLT 399
            QTK KL ++EV+  V+  VND L AW E++P E K I+ K    AS    A +      
Sbjct: 182 GQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPQEGKEIIRKATAAASARIAARKARDLAR 241

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
            RKG+L    LPGKL+DC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILN
Sbjct: 242 NRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPKYQAILPIRGKILN 301

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR D++L + E+  +I+ALGTGI +D FD  KLRYHKI+IM DADVDG HIRTLLLT
Sbjct: 302 VEKARIDRVLQNNEVLAIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQHIRTLLLT 360

Query: 520 FFFRQMPSLI 529
             FR M  LI
Sbjct: 361 LLFRFMRPLI 370


>gi|58465043|gb|AAW78424.1| DNA topoisomerase II beta subunit [Shewanella sp. HAW-EB1]
          Length = 314

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 173/317 (54%), Positives = 233/317 (73%), Gaps = 4/317 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VV ALS  L+L I+R+G +YE  + +G  D P+   G A  +TGTE+ F PS+D FS   
Sbjct: 1   VVXALSHKLQLTIRRDGKLYEQFYTHGEPDEPIKAIGDAT-NTGTEIRFWPSTDTFSDTL 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F++D L  R+RELSFLNS V + L+D+R  + R     Y GGI AFV YL+ +K P+ + 
Sbjct: 60  FHFDILAKRVRELSFLNSGVGVRLVDER--DNRNEFFKYDGGISAFVDYLNVNKTPVNKE 117

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR + SY+E
Sbjct: 118 VFHFIHEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNSYME 177

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           +   +KK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L 
Sbjct: 178 REGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEQLG 237

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  S
Sbjct: 238 DYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALS 297

Query: 426 ELFLVEGDSAGGSAKQG 442
           E+++VEGDSAGGSAKQG
Sbjct: 298 EIYIVEGDSAGGSAKQG 314


>gi|170178314|gb|ACB10204.1| DNA gyrase subunit B [Kribbella jejuensis]
          Length = 370

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 170/370 (45%), Positives = 242/370 (65%), Gaps = 10/370 (2%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREIT 222
            GT +TF  S D+F    ++Y+TL  R RE +FLN  +++ + D+R        +P E +
Sbjct: 2   NGTTITFWASPDVFETTTYSYETLATRFREYAFLNKGLELVIRDERPDHLDEDGKPLEQS 61

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
             Y  G+  +V YL   ++ + +  I  + +   D +S+++A++W+  + E+V  F N I
Sbjct: 62  FRYDDGLVDYVKYLTGIRETVHRDVISFEAAAADDTMSLEVALQWSGSFQESVHTFANAI 121

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K+ +P+F 
Sbjct: 122 NTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQFE 181

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LT 399
            QTK KL ++EV+  V+  VND L AW E++P E + I++K   A+  R AAR+ARD   
Sbjct: 182 GQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPAEGREIIRKASAAASARIAARKARDLAR 241

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
            RKG+L    LPGKLADC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILN
Sbjct: 242 NRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILN 301

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR DK+L + E+  +I+ALGTGI +D FD +KLRYHKI+IM DADVDG HIRTLLLT
Sbjct: 302 VEKARIDKVLQNNEVQAIISALGTGIHED-FDEDKLRYHKIVIMADADVDGQHIRTLLLT 360

Query: 520 FFFRQMPSLI 529
             FR M  LI
Sbjct: 361 LLFRFMRPLI 370


>gi|170178310|gb|ACB10202.1| DNA gyrase subunit B [Kribbella karoonensis]
          Length = 370

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 169/370 (45%), Positives = 241/370 (65%), Gaps = 10/370 (2%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREIT 222
            GT +TF  S D+F    ++Y+TL  R RE +FLN  +++ + D+R        +P E +
Sbjct: 2   NGTTITFWASPDVFETTTYSYETLATRFREYAFLNKGLELVIRDERPDHLDEDGKPLEQS 61

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
             Y  G+  +V YL   ++ + +  I  + +   D +S+++A++W+  + E+V  F N I
Sbjct: 62  FRYDDGLVDYVKYLTGIRETVHRDVISFEAAAADDTMSLEVALQWSGSFQESVHTFANAI 121

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  +  + E     KK +  + GDD REG T+++S+K+ +P+F 
Sbjct: 122 NTHEGGTHEEGFRAALTSLVNGFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQFE 181

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LT 399
            QTK KL ++EV+  V+  VND L AW E++P E + I++K   A+  R AAR+ARD   
Sbjct: 182 GQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKASAAASARIAARKARDLAR 241

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
            RKG+L    LPGKLADC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILN
Sbjct: 242 NRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILN 301

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR DK+L + E+  +I+ALGTGI +D FD +KLRYHKI+IM DADVDG HIRTLLLT
Sbjct: 302 VEKARIDKVLQNNEVQAIISALGTGIHED-FDEDKLRYHKIVIMADADVDGQHIRTLLLT 360

Query: 520 FFFRQMPSLI 529
             FR M  LI
Sbjct: 361 LLFRFMRPLI 370


>gi|321117344|dbj|BAJ72149.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 177/336 (52%), Positives = 239/336 (71%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+ GGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRXGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVS EV+  VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKLAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+ + QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNXKKQAIPPLKGKILNVEKTRFDKMLASPEG 333


>gi|307343836|emb|CBJ19523.1| gyrase B subunit [Micromonospora sp. CR30]
          Length = 350

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 153/352 (43%), Positives = 225/352 (63%), Gaps = 8/352 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G ++   + N     PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGFVWRQQYNNSKP-GPLDK-GETTDSTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T FY+GGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFFYEGGIADFVRHLNASKNPIHKTVVEFG 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGT
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 350


>gi|332272133|gb|AEE38750.1| DNA gyrase subunit beta [Aeromonas bestiarum]
          Length = 308

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 231/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPHAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|153823959|ref|ZP_01976626.1| topoisomerase IV, subunit B [Vibrio cholerae B33]
 gi|126518518|gb|EAZ75741.1| topoisomerase IV, subunit B [Vibrio cholerae B33]
          Length = 486

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 153/440 (34%), Positives = 224/440 (50%), Gaps = 10/440 (2%)

Query: 151 INGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209
            +G     L VTG+ G  +TGT V F P +  F   +F+   L + LR  + L   ++I 
Sbjct: 2   EHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFSVSRLINNLRAKAVLCPGLEII 61

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA-MRWNDG 268
             DK      E    Y+ G++ +++   +    L + P   + +    +   A +   +G
Sbjct: 62  FTDK--VNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEAATWAVIWLPEG 119

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
                  + N IP   GGTH++GLR  L   +  + E      +    + G+D  +    
Sbjct: 120 GELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRCAY 178

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           VLSIKM DP+F+ QTKE+L S +  + V   V D  S WL E P  A+ + +  +  +  
Sbjct: 179 VLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHS 238

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R    RA     RK +    +LPGKL DC+ +D  ++ELFLVEGDSAGGSAKQ R RE Q
Sbjct: 239 R---MRASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQARDREFQ 295

Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508
           A++PLRGKILN      D++L+SQE+  +  ++  GI  DS ++  LRY K+ I+ DAD 
Sbjct: 296 AVMPLRGKILNTWEVSADQVLASQEVHDI--SVALGIDPDSDNLEALRYGKVCILADADS 353

Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568
           DG HI TLL   F R   +L+  G +Y+  PPLY I  GK + Y  D++  E  L   S 
Sbjct: 354 DGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQ 413

Query: 569 SEEIELFCDSKGVISKNDLR 588
            +        KG+   N L+
Sbjct: 414 KKAKVNVQRFKGLGEMNPLQ 433



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 101/284 (35%), Gaps = 44/284 (15%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           + +     ++ ++  L + L    ++        SK V+ K             D  ++D
Sbjct: 209 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQD 268

Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663
                 + F+ +   +G    ++      ++       LN             ++   +L
Sbjct: 269 LNR--TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILN----------TWEVSADQVL 316

Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRI------------FSNRIEENYLTILSLICNG 711
             +    +     ++  S      +Y ++             +  +   +      +   
Sbjct: 317 ASQEVHDISVALGIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKA 376

Query: 712 DKIKITGP-----------CSLLDTIFSIG--------RKGISMQRYKGLGEMNASQLWE 752
             + +  P              LD     G        +  +++QR+KGLGEMN  QL E
Sbjct: 377 GHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRE 436

Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDE-VEPRREFIQEN 795
           TT++P+TR L+++ I DA   D++   L+G +  + RR ++Q N
Sbjct: 437 TTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRN 480


>gi|321117340|dbj|BAJ72147.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 175/336 (52%), Positives = 236/336 (70%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++W DG+ EN+ CFTNNIPQ+ GGTHL+G R+A+TR   +Y++K   SKK K S  
Sbjct: 118 VEVALQWXDGFQENIYCFTNNIPQRXGGTHLAGFRAAMTRTXNAYMDKEGFSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FS QTK+KLVS E +  VE  +N+ L  +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSXQTKDKLVSFEXKXAVEQQMNELLFEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+ QAI PL+GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKKQAIPPLKGKILNVEKXRFDKMLASPEG 333


>gi|38639928|ref|NP_943883.1| topoisomerase II large subunit [Aeromonas phage Aeh1]
 gi|33414617|gb|AAQ17660.1| topoisomerase II large subunit [Aeromonas phage Aeh1]
          Length = 613

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 140/631 (22%), Positives = 237/631 (37%), Gaps = 74/631 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------GLHHMIYEVLDNAIDE 55
           +   ++L   +       MYIG T  E+                GL  +  EV+DN++DE
Sbjct: 2   SQEFKVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVIDNSVDE 61

Query: 56  SLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG---ISAAEVIMTRLHAGGKF 109
           ++     +A+ I V +  D   +V DNGRG+P  +        +       TR  AG  F
Sbjct: 62  AIRTNFEHANQIEVVI-KDNQVSVKDNGRGLPQGMVVTPEGVEVPLPLAAWTRARAGSNF 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
              + + + G +GVG ++ N  S           N   +   N    + +  T  AG   
Sbjct: 121 --SADRKTIGKNGVGSALTNFFSDSFVGETGNGTNTVTVRCTNN--ADEVSYTTKAGKFK 176

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           GT VTF+P    F V   + D    +Q RL  L+     +      K+            
Sbjct: 177 GTNVTFVPDFTRFGVFQLDEDFEQVIQSRLLTLAVNFPPITFKYNGKKVE---------- 226

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  +  +                        + L    ++ Y +  L F N +  K GG
Sbjct: 227 -GKFSKFAAQFGDVVSHNDDN-----------VSLFFATSEEYRQ--LSFVNGVHTKQGG 272

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI-KMPDPRFSSQTKE 345
            H+ G+  +L+ ++   +++    + +K        +E     L I  +  P++  QTKE
Sbjct: 273 NHVYGVLDSLSDELIPMIKRQHKIEINKAR-----IKECLLIGLFIRNLVAPKYDGQTKE 327

Query: 346 KLVSS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           +L S   ++R  +       L+  + + P     I+     AS +       +    +  
Sbjct: 328 RLSSPWAQIRDHMN-LDYKALARKILKTPEVIDPII-----ASALAKKEAADKAAATKAQ 381

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
                +   K    +     K+ LFL EGDSA G   + R+ E Q   PLRGK+LNV   
Sbjct: 382 KKAKKANVAKHVAAAGLGRLKTMLFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWNL 441

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA-HIRTLLLTFFF 522
              ++L ++EI  L+  L   +           Y  I IMTDAD DG   I  L + FF+
Sbjct: 442 PDHEVLKNKEIADLLGILNVELRSK----EAPAYTDIAIMTDADQDGKGSIAMLAIAFFY 497

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           +  P     G ++I++ P Y  T GK   +    +       +   +        S  V 
Sbjct: 498 KFWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSRDEFRSKKFDGKWTHRHIKGLGSLTVE 557

Query: 583 SKN-DLRNFIDDALKIDKLIKDFYPNHDKTF 612
             + + +  I++ +    +I D  P   +  
Sbjct: 558 GDDCEYKQCIENLVLEQVVIDDQTPELLEML 588


>gi|11078835|dbj|BAB17422.1| DNA gyrase subunit B [Pseudomonas citronellolis]
          Length = 297

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 156/300 (52%), Positives = 216/300 (72%), Gaps = 4/300 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+R G ++E  + +G+   PL   G   + TGTEV F  
Sbjct: 1   GGLHGVGVSVVNALSEELRLTIRRAGQVWEQIYRHGVPQFPLRAVGET-DGTGTEVHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S++ F+   F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV YL+
Sbjct: 60  SAETFTNIHFSWDILAKRLRELSFLNSGVGILLRDERSGKE--EMFKYEGGLKAFVEYLN 117

Query: 238 RHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K  + +     IQ   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSAL
Sbjct: 118 TNKTIVNEVFHFNIQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRHLNNYIEQEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297


>gi|332272185|gb|AEE38776.1| DNA gyrase subunit beta [Aeromonas aquariorum]
          Length = 307

 Score =  234 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 181/310 (58%), Positives = 230/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G A   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLTDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|307343820|emb|CBJ19515.1| gyrase B subunit [Micromonospora sp. GUI40]
          Length = 347

 Score =  234 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 153/350 (43%), Positives = 223/350 (63%), Gaps = 8/350 (2%)

Query: 139 IKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRE 198
           I + G+++   + N    +PL   G A + TG+ V+F P  D+F   DF++ T+  RL+E
Sbjct: 1   IHKSGSVWRQHYTNSKP-SPLEK-GEATDLTGSAVSFWPDPDVFETIDFDFQTIYRRLQE 58

Query: 199 LSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
           ++FLN  + I L+D+R       + RE+T  Y GGI  FV +L+  K P+ ++ +     
Sbjct: 59  MAFLNRGITIHLLDERVAEDEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVVEFGAE 118

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
            + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G RSALT  +  Y        K 
Sbjct: 119 EEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKK-LLKG 177

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +P 
Sbjct: 178 DEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNPA 237

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EAK I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGD
Sbjct: 238 EAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGD 297

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           SAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGT
Sbjct: 298 SAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 347


>gi|312076266|ref|XP_003140784.1| hypothetical protein LOAG_05200 [Loa loa]
 gi|307764048|gb|EFO23282.1| hypothetical protein LOAG_05200 [Loa loa]
          Length = 446

 Score =  234 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 170/444 (38%), Gaps = 31/444 (6%)

Query: 40  GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAE 97
           GL+ +  E+L NA D        ++I V +N +    ++ +NGRGIP  LHK E +   E
Sbjct: 21  GLYKIFDEILVNAADNKQRDPKMNLIKVNINKEENEISIYNNGRGIPVVLHKIEKLYVPE 80

Query: 98  VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGIL 155
           +I   L     ++    KV+GG +G G  + N  S    L          ++ +++N + 
Sbjct: 81  LIFGTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTLETSTNEYEKAFKQTWVNNMS 140

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLID 212
                   ++  +  T VTF P    F +   + D    +  R  +++     V++ L +
Sbjct: 141 KGEEPKITTSKREDFTRVTFKPDLAKFKMTKLDDDIVALMCRRAYDIAGSTRGVKVFLNN 200

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272
           K+             G + +V    +H         ++     +   ++A+  +D   + 
Sbjct: 201 KQ---------IPVQGFKQYVEQYVKHNVDNNGEAYKVVYESVSPRWEVALTISDKGFQQ 251

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N+I    GG H+  +   +  ++   ++K    K    +V     +      ++ 
Sbjct: 252 V-SFANSIATTKGGRHVDYVVDQIASKLIDVIKK-KIGKSGGINVKPFQIKNHMWIFVNA 309

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
            + +P F SQTKE +            +++       +       IV+ ++     +   
Sbjct: 310 LIENPTFDSQTKETMTLQSKSFGSTCELSEKFIQAALKCG-----IVEAIMAWVRFKQQE 364

Query: 393 RRARDLTRRKGVLDIASLP-GKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRE 446
              +  + +K              D   ++  +  L L EGDSA      G    GR + 
Sbjct: 365 TLDKKCSSKKTSKLKGVPKLEDANDAGTKNSAQCTLILTEGDSAKSLAVSGLGVVGRDK- 423

Query: 447 NQAILPLRGKILNVERARFDKMLS 470
              + PLRGK+LNV      +++ 
Sbjct: 424 -YGVFPLRGKMLNVREGNHKQVID 446


>gi|66474607|gb|AAY46873.1| GyrB [Aeromonas sp. CCRC 13980]
          Length = 371

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 181/373 (48%), Positives = 245/373 (65%), Gaps = 3/373 (0%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GV VS+V ALS  L L  + +G++YE  +  G    PL + G +    GTEV F P   I
Sbjct: 2   GVRVSLVPALSDELLLTFRLDGHVYEQIYHLGEPQAPLKLIGDSTGP-GTEVRFGPRPAI 60

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F+    +Y  L  RLR++SF NS V I L D+R  + R     Y+GGI+AFV YL+++K 
Sbjct: 61  FTPTLVHYYILAKRLRKVSFRNSGVSIRLRDER--DGRVAHFCYEGGIKAFVEYLNQNKT 118

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+          +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + 
Sbjct: 119 PIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 178

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           SY++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++  E  + 
Sbjct: 179 SYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAAEQAMG 238

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           + L+ +L E+P +AKI+V K++DA+  R+AAR+AR++TRRKG  DI   P + A+    +
Sbjct: 239 EKLADFLLENPGDAKIVVNKIIDAARAREAARKAREVTRRKGPADITCEPRQDAEFQSNN 298

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE  ++EGD   G AKQGRSR+NQAIL  +G ILNVE  RFDKM+SSQE GTL+ AL
Sbjct: 299 PALSERHIMEGDYNVGHAKQGRSRKNQAILSPKGMILNVEHPRFDKMISSQEQGTLLPAL 358

Query: 482 GTGIGQDSFDINK 494
               G    + +K
Sbjct: 359 APSRGHHDHNPDK 371


>gi|307343838|emb|CBJ19524.1| gyrase B subunit [Micromonospora sp. CR36]
          Length = 350

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 152/351 (43%), Positives = 224/351 (63%), Gaps = 8/351 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G ++   + N     PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 3   VEIHKSGFVWRQQYNNSKP-GPLDK-GETTDSTGSAVSFWPDPDVFETVDFDFQTIYRRL 60

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T FY+GGI  FV +L+  K P+ ++ +   
Sbjct: 61  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFFYEGGIADFVRHLNASKNPIHKTVVEFG 120

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 121 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 179

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 180 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 239

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 240 PAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 299

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALG
Sbjct: 300 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 350


>gi|11078843|dbj|BAB17426.1| DNA gyrase subunit B [Pseudomonas agarici]
 gi|11078845|dbj|BAB17427.1| DNA gyrase subunit B [Pseudomonas agarici]
 gi|11078853|dbj|BAB17431.1| DNA gyrase subunit B [Pseudomonas agarici]
          Length = 296

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 153/299 (51%), Positives = 213/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  
Sbjct: 1   GGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMRIVGESE-TTGTQIHFKA 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+
Sbjct: 60  SGETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALT
Sbjct: 118 TNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 QEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 296


>gi|239914549|dbj|BAH78953.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 315

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 154/317 (48%), Positives = 213/317 (67%), Gaps = 20/317 (6%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------DN 157
           KVSGGLHGVGVS VN LS WLKL ++R+G ++ M F  GI                   +
Sbjct: 1   KVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGKMVEVS 60

Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           PL ++G   +  GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+RS +
Sbjct: 61  PLRMSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRSGK 119

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277
                  + GG++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VLCFT
Sbjct: 120 E--EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVLCFT 177

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P
Sbjct: 178 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEP 237

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +FSSQTK+KLVSSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR+
Sbjct: 238 KFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKARE 297

Query: 398 LTRRKGVLDIASLPGKL 414
           +TRRKGVLD   LPGKL
Sbjct: 298 MTRRKGVLDGMGLPGKL 314


>gi|226201183|gb|ACO37584.1| DNA gyrase subunit B [Aeromonas taiwanensis]
 gi|226201193|gb|ACO37589.1| DNA gyrase subunit B [Aeromonas sanarellii]
 gi|332272259|gb|AEE38813.1| DNA gyrase subunit beta [Aeromonas caviae]
 gi|332272263|gb|AEE38815.1| DNA gyrase subunit beta [Aeromonas caviae]
 gi|332272265|gb|AEE38816.1| DNA gyrase subunit beta [Aeromonas caviae]
          Length = 307

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 179/310 (57%), Positives = 231/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|158834210|gb|ABW81909.1| DNA gyrase subunit B [Candidatus Regiella insecticola]
 gi|158834212|gb|ABW81910.1| DNA gyrase subunit B [Candidatus Regiella insecticola]
          Length = 230

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 7/230 (3%)

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           +E++E Y I+ +L             ++   L   I +   + K+I      + +  +  
Sbjct: 1   DEAMEQYQISLALDGAALHTNAYAPALAGQALEKLITEHYAVQKIIARMERRYPRALLNH 60

Query: 616 AVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIA 668
            +       E+  ++E        L   LN   ++          +      + L++   
Sbjct: 61  LIYQPNLLQETLANKETVQQWIDSLVILLNQNEQQGSHYSAIVRENTERQLFEPLLRTRT 120

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            GV   + L+   I S   +       ++         +   G ++ +    + LD +  
Sbjct: 121 HGVDTDYPLDFDFIHSGEYRKLCQLGEKLRGLLEQDAFVERGGRRLAVDSFEAALDWLVK 180

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             R+G+++QRYKGLGEMN  QLWETT++P  R +LRV + DA  AD LF+
Sbjct: 181 ESRRGLTIQRYKGLGEMNPDQLWETTMDPANRRMLRVMVKDAIAADQLFT 230


>gi|332272125|gb|AEE38746.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 308

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 231/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPGAPLKQIGDSNSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|332272153|gb|AEE38760.1| DNA gyrase subunit beta [Aeromonas popoffii]
 gi|332272155|gb|AEE38761.1| DNA gyrase subunit beta [Aeromonas popoffii]
          Length = 308

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 231/310 (74%), Gaps = 2/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPHAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSIEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 178

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 179 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAAR 238

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 239 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 298

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 299 KGKILNVEKA 308


>gi|170178292|gb|ACB10193.1| DNA gyrase subunit B [Kribbella aluminosa]
          Length = 370

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 167/370 (45%), Positives = 239/370 (64%), Gaps = 10/370 (2%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------T 222
            GT +TF  S D+F    ++Y+TL  R RE +FLN  +++ + D+R     E       +
Sbjct: 2   NGTTITFWASEDVFETTTYSYETLATRFREYAFLNKGLELVIRDERPDHFDEDGKPLEQS 61

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280
             Y  G+  +V YL   ++ + +  I  + +   + +S+++A++W+  + E+V  F N I
Sbjct: 62  FRYDDGLVDYVKYLTGIRETVHRDVISFEAATAENTMSLEVALQWSGSFQESVHTFANAI 121

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
              +GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K+ +P+F 
Sbjct: 122 NTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQFE 181

Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LT 399
            QTK KL ++EV+  V+  VND L AW E++P E + I++K   A+  R AAR+ARD   
Sbjct: 182 GQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKASAAASARIAARKARDLAR 241

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
            RKG+L    LPGKLADC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILN
Sbjct: 242 NRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILN 301

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
           VE+AR D++L + E+  +I+ALGTGI +D FD  KLRYHKI+IM DADVDG HIRTLLLT
Sbjct: 302 VEKARIDRVLQNNEVLAIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQHIRTLLLT 360

Query: 520 FFFRQMPSLI 529
             FR M  LI
Sbjct: 361 LLFRFMRPLI 370


>gi|11078891|dbj|BAB17450.1| DNA gyrase subunit B [Pseudomonas mendocina]
          Length = 297

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 155/300 (51%), Positives = 212/300 (70%), Gaps = 4/300 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG ++E  + +G+    L   G     +GTEV F P
Sbjct: 1   GGLHGVGVSVVNALSHELRLTIRREGKVWEQVYHHGVPQFALRPVGDTE-GSGTEVHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S D F    F++D L  R+RELSFLNS V I L D+R+ +       Y+GG+ AFV YL+
Sbjct: 60  SPDTFRNIHFSWDILAKRIRELSFLNSGVGIVLRDERAGKE--ELFKYEGGLRAFVEYLN 117

Query: 238 RHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            +K  + Q      Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSAL
Sbjct: 118 TNKTAVNQVFHFNCQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           E  +    + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLAD
Sbjct: 238 EQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 297


>gi|332272267|gb|AEE38817.1| DNA gyrase subunit beta [Aeromonas schubertii]
 gi|332272269|gb|AEE38818.1| DNA gyrase subunit beta [Aeromonas schubertii]
 gi|332272271|gb|AEE38819.1| DNA gyrase subunit beta [Aeromonas schubertii]
          Length = 307

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 184/310 (59%), Positives = 233/310 (75%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G A   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSILLTDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL++ K P+ Q        +D I +++AM+WNDGY E V
Sbjct: 60  R--DGREVHFCYEGGIKAFVEYLNQSKTPIHQKVFHFSADQDGIGVEVAMQWNDGYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL+G R+ALTR + SY++K   SKK K S  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEDYSKKAKTSASGDDVREGLVAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + D L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMADKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|307343802|emb|CBJ19506.1| gyrase B subunit [Micromonospora sp. GUI13]
          Length = 345

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 146/346 (42%), Positives = 218/346 (63%), Gaps = 8/346 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G ++   + N     PL   G   + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGFVWRQQYHNSKP-GPLDK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T  Y+GGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFLYEGGIADFVRHLNASKNPIHKTVVEFG 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + EI  L
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEIQAL 344


>gi|213421102|ref|ZP_03354168.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 136

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 675 FVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI 734
             L+   +     +       ++         +     +  +T     L+ +    R+G+
Sbjct: 7   IPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTSFEQALEWLVKESRRGL 66

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794
           ++QRYKGLGEMN  QLWETT++P++R +LRV + DA  AD LF+ LMGD VEPRR FI+E
Sbjct: 67  AIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEE 126

Query: 795 NSLP-SALDI 803
           N+L  + +DI
Sbjct: 127 NALKAANIDI 136


>gi|324962662|gb|ADY62433.1| gyrase subunit B [Frankia sp. BMG5.11]
          Length = 277

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 107/278 (38%), Positives = 146/278 (52%), Gaps = 22/278 (7%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ +SY VSGGLHGVGVS
Sbjct: 1   TLVADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+ +   + N     PL  T      TGT +TF     IF    
Sbjct: 61  VVNALSTRLDVEIQSDGHSWFQPYENSRPARPLAQT-GTSKKTGTTITFWADPTIFETTT 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREITMFY 225
           + Y+TL  RL+E++FLN  + I+L D+R                       EP E+T  Y
Sbjct: 120 YKYETLFRRLQEMAFLNKGLSITLRDERGKATAPATTTEEPTEAAKPAEAVEPTEVTFKY 179

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             G+  FV +L+  K  + +S I ++     I  +LAM+WN GY+E+V  F N I   +G
Sbjct: 180 DNGLVDFVGHLNATKDAVHRSVISLESKGIGIEAELAMQWNSGYNESVYTFANTINTHEG 239

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           GTH  G R+AL   +  Y +     K  K      D R
Sbjct: 240 GTHEEGFRAALISAVNDYRKDQNLLKPVKAGSKNSDER 277


>gi|324962676|gb|ADY62440.1| gyrase subunit B [Frankia sp. BMG5.15]
          Length = 264

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 104/265 (39%), Positives = 144/265 (54%), Gaps = 22/265 (8%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ +SY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+ +G+ +   + N     PL  T      TGT +TF     IF    
Sbjct: 61  VVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQT-GTSKKTGTTITFWADPTIFETTT 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREITMFY 225
           + Y+TL  RL+E++FLN  + I+L D+R                       EP E+T  Y
Sbjct: 120 YKYETLFRRLQEMAFLNKGLSITLRDERGKATAPATTTEEPTEAAKPVEAVEPTEVTFKY 179

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
             G+  FV +L+  K  + +S I ++     I  +LAM+WN GY+E+V  F N I   +G
Sbjct: 180 DNGLVDFVGHLNATKDAVHRSVISLESKGTGIEAELAMQWNSGYNESVYTFANTINTHEG 239

Query: 286 GTHLSGLRSALTRQITSYVEKSFGS 310
           GTH  G R+ALT  + +Y +     
Sbjct: 240 GTHEEGFRAALTSAVNAYAKDQNLL 264


>gi|48425513|pdb|1S14|A Chain A, Crystal Structure Of Escherichia Coli Topoisomerase Iv
           Pare 24kda Subunit
 gi|48425514|pdb|1S14|B Chain B, Crystal Structure Of Escherichia Coli Topoisomerase Iv
           Pare 24kda Subunit
          Length = 194

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 28/219 (12%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   TD     +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRP-NHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+                        +S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILC-----------------------IS 94

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG     L V G+    +TGT V F P    F   
Sbjct: 95  VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 154

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            F+   L H L+  + L   V+I+  D+ +   +     
Sbjct: 155 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 193


>gi|332272237|gb|AEE38802.1| DNA gyrase subunit beta [Aeromonas jandaei]
 gi|332272239|gb|AEE38803.1| DNA gyrase subunit beta [Aeromonas jandaei]
 gi|332272241|gb|AEE38804.1| DNA gyrase subunit beta [Aeromonas jandaei]
 gi|332272243|gb|AEE38805.1| DNA gyrase subunit beta [Aeromonas jandaei]
          Length = 307

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 181/310 (58%), Positives = 231/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY+EK   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|332272181|gb|AEE38774.1| DNA gyrase subunit beta [Aeromonas aquariorum]
 gi|332272183|gb|AEE38775.1| DNA gyrase subunit beta [Aeromonas aquariorum]
 gi|332272187|gb|AEE38777.1| DNA gyrase subunit beta [Aeromonas aquariorum]
 gi|332272189|gb|AEE38778.1| DNA gyrase subunit beta [Aeromonas aquariorum]
 gi|332272191|gb|AEE38779.1| DNA gyrase subunit beta [Aeromonas aquariorum]
 gi|332272193|gb|AEE38780.1| DNA gyrase subunit beta [Aeromonas aquariorum]
 gi|332272195|gb|AEE38781.1| DNA gyrase subunit beta [Aeromonas aquariorum]
 gi|332272201|gb|AEE38784.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
 gi|332272203|gb|AEE38785.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
 gi|332272205|gb|AEE38786.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
 gi|332272207|gb|AEE38787.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
          Length = 307

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 181/310 (58%), Positives = 231/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G A   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|332272179|gb|AEE38773.1| DNA gyrase subunit beta [Aeromonas media]
          Length = 307

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 178/310 (57%), Positives = 231/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLMDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|89143168|emb|CAJ57481.1| DNA gyrase subunit B [Microbacterium aerolatum]
          Length = 366

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 152/365 (41%), Positives = 219/365 (60%), Gaps = 20/365 (5%)

Query: 143 GNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           G  +  SF NG      L   G   ++TGT++TF P  +IF+   +F YD L+ R ++++
Sbjct: 3   GFAWHHSFANGGTPQQKLEK-GEPTDETGTDITFWPDPEIFTESVEFEYDVLRTRFQQMA 61

Query: 201 FLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFVSY--LDRHKKPLMQ 245
           FLN  ++I L D+R               + R     Y+ G+  +V Y    RH + + +
Sbjct: 62  FLNKGLRIELRDEREGATYEIEEEGTTVTKQRADVFLYERGLVDYVEYLNKVRHAEVVTE 121

Query: 246 SPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             I  +       IS+++AM+W  GY ENV  + N I   +GGTH  G R+ALT  +  Y
Sbjct: 122 EIIDFEAEDVERKISLEIAMQWTTGYSENVYTYANTINTHEGGTHEEGFRAALTTLVNKY 181

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
              +   K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+  V D 
Sbjct: 182 ARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVVGDQ 241

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  W E +P +AK +++K +DA+  R AAR+AR+  RRK V + A++P KL DC+ +DP 
Sbjct: 242 LGDWFERNPTQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSKDPS 301

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L+++E+  +I A GT
Sbjct: 302 ISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALANKEVQAMIQAFGT 361

Query: 484 GIGQD 488
           GIG+D
Sbjct: 362 GIGED 366


>gi|307343778|emb|CBJ19494.1| gyrase B subunit [Micromonospora lupini]
          Length = 351

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 153/353 (43%), Positives = 226/353 (64%), Gaps = 8/353 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G+++   + N      L   G A + TG+ V+F P  D+F   DF++ T+  RL
Sbjct: 2   VEIHKSGSVWRQHYPNSKPSA-LEK-GEATDSTGSAVSFWPDPDVFETVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           +E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +   
Sbjct: 60  QEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKNPIHKTVVEFG 119

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        
Sbjct: 120 AEEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LL 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +
Sbjct: 179 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 238

Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431
           P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VE
Sbjct: 239 PAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 298

Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           GDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTG
Sbjct: 299 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTG 351


>gi|307343874|emb|CBJ19542.1| gyrase B subunit [Micromonospora sp. SR6]
          Length = 348

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 152/351 (43%), Positives = 220/351 (62%), Gaps = 8/351 (2%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           +   + +     PL   G   + TG+ V+F P +D+F   DF++ T+  RL+E++FLN  
Sbjct: 1   WRQQYHHSKP-TPLEK-GETTDRTGSAVSFWPDADVFETVDFDFQTIYRRLQEMAFLNRG 58

Query: 206 VQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           + I L+D+R       + RE+T  Y GGI  FV +L+  K P+ ++ +      + +S++
Sbjct: 59  ITIHLLDERVPEGEEGKIREVTFRYDGGIADFVRHLNASKNPMHKTVVEFDAEEEGMSVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN+ Y E+V  F NNI   +GGTH  G RSALT  +  Y        K    + G+
Sbjct: 119 IAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKK-LLKGDEKLSGE 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +P EAK I++
Sbjct: 178 DIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQ 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDSAGGSAK
Sbjct: 238 KASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491
           QGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI  D   
Sbjct: 298 QGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDDFDM 348


>gi|89143206|emb|CAJ57500.1| DNA gyrase subunit B [Microbacterium phyllosphaerae]
          Length = 358

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 146/358 (40%), Positives = 213/358 (59%), Gaps = 20/358 (5%)

Query: 137 LRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQH 194
           + +K++G ++  SF NG +    L   G A ++TGT +TF P ++IF    DF+YDTL+ 
Sbjct: 1   VEVKQKGFVWRHSFANGGVPQQKLEK-GEASDETGTAITFWPDAEIFAETTDFDYDTLRT 59

Query: 195 RLRELSFLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFVSY--LDRH 239
           R ++++FLN  ++I L D+R                      FY+ G+  +V Y    RH
Sbjct: 60  RFQQMAFLNKGLRIELSDERPASAYEVEVDGQATLTQPNDVFFYERGLVDYVEYLNKVRH 119

Query: 240 KKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            + +    I  +       IS+++AM+W   Y ENV  + N I   +GGTH  G R+ALT
Sbjct: 120 AEVVNDEIIAFESEDTERKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALT 179

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +  Y   +   K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+
Sbjct: 180 TLVNKYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQ 239

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             V D L  W   +P +AK +++K +DA+  R AAR+AR+  RRK V + A++P KL DC
Sbjct: 240 KVVGDQLGDWFGRNPNQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDC 299

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           + +DP  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L ++E+ 
Sbjct: 300 TSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNKEVQ 357


>gi|332272157|gb|AEE38762.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 307

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 229/310 (73%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGESS-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLRDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+           D I +++AM+WND Y E V
Sbjct: 60  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEHDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|308153096|dbj|BAJ22137.1| DNA gyrase subunit B [Streptomyces sulfonofaciens]
          Length = 326

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 133/327 (40%), Positives = 193/327 (59%), Gaps = 22/327 (6%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVGVSVVNALS+ + + IKR+G  +   +  G+    L       ++TG
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTKVSVEIKRDGYRWTQDYKLGVPTAALQR-NEPTDETG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------- 215
           T VTF    DIF   D++++TL  R +E++FLN  ++I+L D+R                
Sbjct: 60  TTVTFWADPDIFETTDYSFETLSRRFQEMAFLNKGLRIALTDERESAKATSGADAGEAVD 119

Query: 216 ---PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGY 269
               EPR +T +Y+GGI  FV Y   R    +  + I I        +S+++AM+WN GY
Sbjct: 120 ETVAEPRSVTYYYEGGIVDFVKYLNSRKGDVVHDTVIDIDAEDRERMLSVEVAMQWNSGY 179

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E V  F N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T++
Sbjct: 180 SEGVYSFANTIHTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAI 239

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+ +P+F  QTK KL ++E ++ V+  V++ LS WL+ +P EA  I++K + A+  R
Sbjct: 240 ISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLSDWLDRNPNEAAEIIRKGIQAATAR 299

Query: 390 DAARRARDLTRRKGVLDIASLPGKLAD 416
            AAR+ARDLTRRKG+L+ ASLPGKL+D
Sbjct: 300 VAARKARDLTRRKGLLETASLPGKLSD 326


>gi|332272159|gb|AEE38763.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|332272163|gb|AEE38765.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 307

 Score =  233 bits (595), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 229/310 (73%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSS-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLHDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+           D I +++AM+WND Y E V
Sbjct: 60  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEHDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|332272219|gb|AEE38793.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 307

 Score =  233 bits (595), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 180/310 (58%), Positives = 231/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|145640542|ref|ZP_01796126.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|145275128|gb|EDK14990.1| DNA gyrase subunit B [Haemophilus influenzae 22.4-21]
          Length = 310

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 141/294 (47%), Positives = 197/294 (67%), Gaps = 2/294 (0%)

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           +N+ +  +L E+P +AKIIV +++ A+  R+AAR+AR++TRRKG LDIA LPGKLADC E
Sbjct: 1   MNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 60

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +DP  SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT
Sbjct: 61  KDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 120

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P LI  G++YI +P
Sbjct: 121 ALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQIPELIERGYVYIAQP 180

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           PLY + +GK  +Y+KD + +E Y +  +L         +   ++       + +   + K
Sbjct: 181 PLYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQK 240

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK 651
           LI     ++    ++  +     + E    +    +       +L     ++ +
Sbjct: 241 LIGRLNRHYPVPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQ 294


>gi|332272235|gb|AEE38801.1| DNA gyrase subunit beta [Aeromonas jandaei]
          Length = 307

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 180/310 (58%), Positives = 231/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y+EK   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMEKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|124039607|dbj|BAF45399.1| DNA gyrase beta subunit [uncultured bacterium]
 gi|124039611|dbj|BAF45401.1| DNA gyrase beta subunit [uncultured bacterium]
          Length = 314

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 144/317 (45%), Positives = 210/317 (66%), Gaps = 3/317 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS W  ++++R G IY+ S++ G    PL   G     +GT   F+  S IFS  +++
Sbjct: 1   NALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFMADSQIFSTTEYD 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLRE+++LN  +++ + D++S + R      +GGI  FV +L+R+++   + PI
Sbjct: 60  FETLTDRLREIAYLNKGLEVYIYDEKSDQERTYYF--EGGITGFVRHLNRNREVRHRQPI 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I    D+  +++A+++NDGY ++ L F N +   DGGTHL+G RSALTR    Y  KS 
Sbjct: 118 YITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTVDGGTHLTGFRSALTRAFNDYAHKSK 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K    +++GDD REG  +++S+K+P+P+F  QTK KL + E++S VES V + LS +L
Sbjct: 178 FLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVAEQLSLYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EEHP + K I++K + A+  R+AAR+ARDL  RK  LD  +LPGKLADCSERD    ELF
Sbjct: 238 EEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLCELF 297

Query: 429 LVEGDSAGGSAKQGRSR 445
           LVEGDSAGGSAKQGR+R
Sbjct: 298 LVEGDSAGGSAKQGRNR 314


>gi|307343762|emb|CBJ19486.1| gyrase B subunit [Micromonospora citrea]
          Length = 345

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 151/348 (43%), Positives = 221/348 (63%), Gaps = 8/348 (2%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
            ++G ++   + N     PL   G   + TG+ V+F P  D+F   DF++ T+  RL+E+
Sbjct: 1   HKDGFVWRQQYQNSKP-TPLEK-GEPTDRTGSAVSFWPDPDVFETVDFDFQTIYRRLQEM 58

Query: 200 SFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           +FLN  V I L+D+R       +PRE+T  YKGGI  FV +L+  K P+ ++ +      
Sbjct: 59  AFLNRGVTIHLLDERVPEEEEGKPREVTFCYKGGIADFVRHLNASKNPIHKTVVEFGSEE 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           + +S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        K  
Sbjct: 119 EGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGT-EKKLLKGD 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
             + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +P E
Sbjct: 178 EKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAE 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AKII++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDS
Sbjct: 238 AKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDS 297

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           AGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALG
Sbjct: 298 AGGSAKQGRDPRVQAILPIRGKILNVEKARIDRVLKNAEVQALITALG 345


>gi|332272233|gb|AEE38800.1| DNA gyrase subunit beta [Aeromonas jandaei]
          Length = 307

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 180/310 (58%), Positives = 230/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+A V YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKALVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY+EK   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|222872366|gb|EEF09497.1| predicted protein [Populus trichocarpa]
          Length = 391

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 77/180 (42%), Positives = 107/180 (59%), Gaps = 12/180 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+     S Y   SI++LKGL+ VK+RP MY   T  ++ L H++ EV+DNA DE+L GY
Sbjct: 218 MASKT--SQYSESSIRVLKGLEPVKQRPGMY---TRTDNPL-HVVQEVIDNASDEALGGY 271

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA---GGKFNQKSYKVS 117
              I VTL+ DGS +V D+GRGIP  +H EE +   E++ TRLHA     K    +Y  S
Sbjct: 272 GTEILVTLHRDGSISVEDDGRGIPVGIHPEEQVPVVEIVFTRLHAGGKFDKGKGGAYAFS 331

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLV--VTGSAGNDTGTEVT 174
           GGLHGVGVSV NAL++ L + + R+G +  ++F + G +  PL           +GT V 
Sbjct: 332 GGLHGVGVSVTNALATRLDVTVWRDGAVSTLTFEHGGEVTRPLATRKIERGEKKSGTRVQ 391


>gi|170178308|gb|ACB10201.1| DNA gyrase subunit B [Kribbella yunnanensis]
          Length = 369

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 162/368 (44%), Positives = 235/368 (63%), Gaps = 9/368 (2%)

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-----ITMF 224
           GT +TF PS+D+F    ++Y+TL  R RE +FLN  +++ + D+R     +      +  
Sbjct: 3   GTTITFWPSADVFETTVYSYETLTTRFREYAFLNKGLELVIRDERPDHTEDGNPVEQSFK 62

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y  G+  +V YL   ++ + +  I  + +   +++S+++AM+W+  + E+V  F N I  
Sbjct: 63  YDAGLVDYVKYLTGIRETVHRDVIAFEAAQADNSLSLEVAMQWSGSFQESVHTFANTINT 122

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K+ +P+F  Q
Sbjct: 123 HEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLGNPQFEGQ 182

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLTRR 401
           TK KL ++EV+  V+  VND L AW E++P E + I+ K    AS    A +       R
Sbjct: 183 TKTKLGNTEVKGFVQRVVNDRLGAWFEQNPQEGREIIRKATAAASARIAARKARDLARNR 242

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L    LPGKL+DC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILNVE
Sbjct: 243 KGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPKYQAILPIRGKILNVE 302

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR D++L + E+  +I+ALGTGI +D FD  KLRYHKI+IM DADVDG HIRTLLLT  
Sbjct: 303 KARIDRVLQNNEVLAIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQHIRTLLLTLL 361

Query: 522 FRQMPSLI 529
           FR M  LI
Sbjct: 362 FRFMRPLI 369


>gi|226885280|emb|CAX65665.1| gyrase B subunit [Micromonospora matsumotoense]
          Length = 349

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 151/348 (43%), Positives = 223/348 (64%), Gaps = 8/348 (2%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G ++   + N   D+     G   + TG+ V+F P  D+F   DF++ T+  RL+E++FL
Sbjct: 3   GFVWRQQYHNSKPDSLDK--GETTDRTGSAVSFWPDPDVFETTDFDFQTIYRRLQEMAFL 60

Query: 203 NSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
           N ++ I L+D+R       +PRE+T +Y+GGI  FV +L+  K P+ ++ +      + +
Sbjct: 61  NRALSIHLLDERVAEGEEGKPREVTFYYEGGIADFVRHLNASKNPMHKTVVEFAAEEEGM 120

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
           S+++AM+WN+ Y E+V  F N I   +GGTH  G R+ALT  +  Y        K    +
Sbjct: 121 SVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGADKK-LLKGDEKL 179

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +P EAK 
Sbjct: 180 SGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKT 239

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDSAGG
Sbjct: 240 IIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGG 299

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           SAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 300 SAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 347


>gi|209408288|emb|CAP19829.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 288

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 147/291 (50%), Positives = 206/291 (70%), Gaps = 3/291 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS
Sbjct: 1   GLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ 
Sbjct: 60  AETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNT 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR
Sbjct: 118 NKTAVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 178 NLNNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            +    + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 EMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 288


>gi|170178316|gb|ACB10205.1| DNA gyrase subunit B [Kribbella antibiotica]
          Length = 369

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 171/368 (46%), Positives = 242/368 (65%), Gaps = 9/368 (2%)

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----EPREITMF 224
           GT +TF PS  +F    F+++TL  R RE +FLN  +++ + D+R       +P E +  
Sbjct: 3   GTTITFWPSPGVFETTTFSFETLSTRFREYAFLNKGLELVIRDERPEFIEDGQPAEQSFR 62

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
           Y+ G+  +V YL   ++ + +  I  + +    ++S+++AM+W+  Y E+V  F N I  
Sbjct: 63  YEAGLVDYVKYLTGIRETVHRDVIAFEAAQADGSLSLEVAMQWSGSYQESVHTFANAINT 122

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K+ +P+F  Q
Sbjct: 123 HEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQFEGQ 182

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRR 401
           TK KL ++EV+  V+  VND L AW E++P E + I++K   A+  R AAR+ARD    R
Sbjct: 183 TKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKASAAASARIAARKARDLARNR 242

Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461
           KG+L    LPGKLADC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILNVE
Sbjct: 243 KGLLAGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGREPKFQAILPIRGKILNVE 302

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521
           +AR DK+L + E+  +I+ALGTGI +D FD  KLRYHKI+IM DADVDG HIRTLLLT  
Sbjct: 303 KARIDKVLQNNEVLAIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQHIRTLLLTLL 361

Query: 522 FRQMPSLI 529
           FR M  LI
Sbjct: 362 FRFMRPLI 369


>gi|332272257|gb|AEE38812.1| DNA gyrase subunit beta [Aeromonas caviae]
 gi|332272261|gb|AEE38814.1| DNA gyrase subunit beta [Aeromonas caviae]
          Length = 307

 Score =  232 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 179/310 (57%), Positives = 231/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLMDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|332272173|gb|AEE38770.1| DNA gyrase subunit beta [Aeromonas media]
 gi|332272175|gb|AEE38771.1| DNA gyrase subunit beta [Aeromonas media]
 gi|332272177|gb|AEE38772.1| DNA gyrase subunit beta [Aeromonas media]
 gi|332272221|gb|AEE38794.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|332272223|gb|AEE38795.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|332272225|gb|AEE38796.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|332272227|gb|AEE38797.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|332272229|gb|AEE38798.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|332272231|gb|AEE38799.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
          Length = 307

 Score =  232 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 178/310 (57%), Positives = 231/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLLDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|332272161|gb|AEE38764.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 307

 Score =  232 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 178/310 (57%), Positives = 230/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PSS IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSS-GTGTEVRFWPSSTIFTDTLYHYEILAKRLRELSFLNSGVSIRLHDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+           D I +++AM+WND Y E V
Sbjct: 60  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEHDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|209408290|emb|CAP19830.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 288

 Score =  232 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 149/291 (51%), Positives = 207/291 (71%), Gaps = 3/291 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F P
Sbjct: 1   GGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           SS+ F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+
Sbjct: 60  SSETFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALT
Sbjct: 118 TNKTPVNEVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
             +      +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA
Sbjct: 238 QEMGKYFGDFLLEHPGEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288


>gi|332272165|gb|AEE38766.1| DNA gyrase subunit beta [Aeromonas cavernicola]
          Length = 307

 Score =  232 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 177/310 (57%), Positives = 230/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|332272245|gb|AEE38806.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|332272247|gb|AEE38807.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|332272249|gb|AEE38808.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|332272251|gb|AEE38809.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|332272253|gb|AEE38810.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|332272255|gb|AEE38811.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 307

 Score =  232 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 180/310 (58%), Positives = 231/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSIRLLDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|11078757|dbj|BAB17383.1| DNA gyrase subunit B [Marinobacterium georgiense]
          Length = 296

 Score =  232 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 158/299 (52%), Positives = 215/299 (71%), Gaps = 3/299 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALSS LKL I+R G ++E  + +G+ + PL V G   + TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSSELKLTIRRAGQVHEQIYHHGVPEVPLRVVGET-DLTGTIVRFKP 59

Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           S + F+   F YD L  RLRELSFLNS V+I L D+RS   RE    Y+GG+ AFV +L+
Sbjct: 60  SEETFTNISFQYDILAKRLRELSFLNSGVRIRLKDERSG--REEVFEYEGGLAAFVEFLN 117

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           ++K P+ +         + + +++AM+WNDG+ E + CF NNIPQ+DGGTHLSG R+ALT
Sbjct: 118 QNKSPINKIFHFNTMHENGVGVEVAMQWNDGFQEGLHCFANNIPQRDGGTHLSGFRAALT 177

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           R + SY+E    +K  K S  GDD REG  +++S+K+PDP+FSSQTK+KLVSSEV++ VE
Sbjct: 178 RCLNSYIESEQLNKNGKVSTSGDDSREGLVAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 237

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
             +   L+A+L E+P +AK +V+K++DA+  R+AAR+AR++TRRKG LD+A LPGKLAD
Sbjct: 238 QLMASELNAYLLENPQDAKAVVQKMIDAARAREAARKAREMTRRKGALDVAGLPGKLAD 296


>gi|332272273|gb|AEE38820.1| DNA gyrase subunit beta [Aeromonas diversa]
 gi|332272275|gb|AEE38821.1| DNA gyrase subunit beta [Aeromonas diversa]
          Length = 307

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 184/310 (59%), Positives = 233/310 (75%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G A   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNSGVSILLADE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL++ K P+ Q        +D I +++AM+WNDGY E V
Sbjct: 60  R--DGREVHFCYEGGIKAFVEYLNQSKTPIHQKVFHFSADQDGIGVEVAMQWNDGYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL+G R+ALTR + SY++K   SKK K S  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEDYSKKAKTSASGDDVREGLVAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + D L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMADKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|222137878|gb|ACM45452.1| DNA gyrase subunit B [Aeromonas fluvialis]
          Length = 307

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 182/310 (58%), Positives = 231/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G A   TGTEV F PSS IFS   F+Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDAT-TTGTEVRFWPSSTIFSDTLFHYEILAKRLRELSFLNSGVSIRLLDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+           D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEHDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVERA
Sbjct: 298 KGKILNVERA 307


>gi|10121863|gb|AAG13404.1|AF285158_1 topoisomerase II alpha-3 [Homo sapiens]
          Length = 536

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/542 (17%), Positives = 184/542 (33%), Gaps = 93/542 (17%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    RE   +++ 
Sbjct: 133 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ 192

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 193 TWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 252

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 253 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTM 303

Query: 266 NDGYHENV-------------------------------LCFTN----NIPQKDGGTHLS 290
           ++   + +                                 F N     I    GG H+ 
Sbjct: 304 SEKGFQQISFVNSIATSKSSKYWSSRKSKQHILLNFFVLFKFINDAFFGICPFKGGRHVD 363

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
            +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE +   
Sbjct: 364 YVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQ 420

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
                    +++             + I+  V   +         +    +   +     
Sbjct: 421 PKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQ---VQLNKKCSAVKHNRIKGIPK 476

Query: 411 PGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARF 465
                D   R+  +  L L EGDSA      G    GR +    + PLRGKILNV  A  
Sbjct: 477 LDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASH 534

Query: 466 DK 467
            +
Sbjct: 535 KQ 536


>gi|332272213|gb|AEE38790.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|332272215|gb|AEE38791.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|332272217|gb|AEE38792.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 307

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 180/310 (58%), Positives = 230/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLQDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|58465063|gb|AAW78427.1| DNA topoisomerase II beta subunit [Shewanella halifaxensis HAW-EB4]
          Length = 313

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 168/316 (53%), Positives = 233/316 (73%), Gaps = 4/316 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           V ALSS L++ I+R+G +YE  + +G+ D P+   G A   TGTE+ F PS++ F+   F
Sbjct: 1   VYALSSXLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEAT-KTGTEIRFWPSTETFTDVLF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           ++D L  R+RELSFLNS V I L+D+R  + R+    Y+GGI AFV YL+ +K P+ +  
Sbjct: 60  HFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKTPVNKEV 117

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+E+
Sbjct: 118 FHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMER 177

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              +KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + L  
Sbjct: 178 EGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGD 237

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +L EHP EAK+IV K++DA+  R+AAR+AR++TRRKG LD+  LPGKLADC E+DP  SE
Sbjct: 238 YLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSE 297

Query: 427 LFLVEGDSAGGSAKQG 442
           +++VEGDSAGGSAK G
Sbjct: 298 IYIVEGDSAGGSAKXG 313


>gi|89143214|emb|CAJ57504.1| DNA gyrase subunit B [Microbacterium terregens]
          Length = 353

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 143/362 (39%), Positives = 210/362 (58%), Gaps = 28/362 (7%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
            R+G         G+   PL     +  DTGT +TF P   IF   DF+YDTL+ R +++
Sbjct: 2   YRDG---------GVPQAPLERAEESP-DTGTTITFWPDDSIFETVDFDYDTLRTRFQQM 51

Query: 200 SFLNSSVQISLIDKRSP--------------EPREITMFYKGGIEAFVSY--LDRHKKPL 243
           +FLN  ++I L+D+R                +    +  Y+ G+  +V Y    R  + +
Sbjct: 52  AFLNKGLRIDLVDERPGAAYEQEVSPGEVVLQQPNDSFLYERGLVDYVEYLNRVRKAEHV 111

Query: 244 MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            +  I  +       I++++AM+W   Y ENV  + N I   +GGTH  G R+ALT  + 
Sbjct: 112 HEDIIDFETEDTERKIALEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLVN 171

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y   +   K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E ++ V+  V 
Sbjct: 172 KYARANSLLKEKDENLSGDDVREGLTAVISVKLAEPQFEGQTKTKLGNTEAKAFVQKVVG 231

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D L  W + +P +AK +V+K +DA+  R AAR+AR+  RRK V + A++P KL DC+ +D
Sbjct: 232 DRLGDWFDRNPAQAKNVVRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSKD 291

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
           P  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR D+ L ++E+  +I A 
Sbjct: 292 PSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDRALGNKEVQAMIQAF 351

Query: 482 GT 483
           GT
Sbjct: 352 GT 353


>gi|307343780|emb|CBJ19495.1| gyrase B subunit [Micromonospora mirobrigensis]
          Length = 352

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 149/354 (42%), Positives = 220/354 (62%), Gaps = 10/354 (2%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           + I + G ++   + N   D PL   G   +  G+ V+F P  +IF   DF++ T+  RL
Sbjct: 2   VEIHKAGFVWRQKYANSKPD-PLEK-GETTDRAGSAVSFWPDPEIFQTVDFDFQTIYRRL 59

Query: 197 RELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
            E++FLN  ++I L+D+R       + RE+T  Y+ GI  FV +L+  K P+ ++ ++  
Sbjct: 60  HEMAFLNRGLRIHLLDERVAEGEEGKVREVTFLYEDGIADFVRHLNASKNPIHKTVVQFD 119

Query: 252 GSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
                  +++++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y      
Sbjct: 120 AEEAEEGMAVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGA-EKK 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
             K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W +
Sbjct: 179 LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFD 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+
Sbjct: 239 RNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFI 298

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALGT
Sbjct: 299 VEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 352


>gi|307343808|emb|CBJ19509.1| gyrase B subunit [Micromonospora sp. GUI19]
          Length = 347

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 152/350 (43%), Positives = 223/350 (63%), Gaps = 8/350 (2%)

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            I + G ++   + N     PL   G   + TG+ V+F P  D+F   DF++ T+  RL+
Sbjct: 1   EIHKSGFVWRQQYNNSKP-GPLDK-GETTDRTGSAVSFWPDPDVFETVDFDFQTIYRRLQ 58

Query: 198 ELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           E++FLN +++I L+D+R  E      RE+T FY+GGI  FV +L+  K P+ ++ +    
Sbjct: 59  EMAFLNRALRIHLLDERVAEEEDGRQREVTFFYEGGIADFVRHLNASKNPIHKTVVEFGA 118

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
             + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        K
Sbjct: 119 EEEGMSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LLK 177

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +P
Sbjct: 178 GDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNP 237

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAK+I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEG
Sbjct: 238 AEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEG 297

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           DSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALG
Sbjct: 298 DSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 347


>gi|23978208|dbj|BAC21104.1| DNA gyrase B subunit [Arthrospira platensis]
          Length = 323

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 133/312 (42%), Positives = 201/312 (64%), Gaps = 7/312 (2%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVG+SVVNALS W+++ + R+   Y   +  G+    L    S  + TGT V F P +
Sbjct: 12  LHGVGISVVNALSEWVEVTVLRDHKRYVQRYERGVPVTELEEHSSKESQTGTSVCFKPDT 71

Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFV 233
            IF+   +F YDT+  RLREL++LN+ V+I+L D R       E +  +  Y+GGI+ +V
Sbjct: 72  KIFTTGIEFEYDTIASRLRELAYLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYV 131

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGL 292
           +Y++R K+ L +  I + G R+N+ +++A++W  D Y + +L F NNI   DGGTHL GL
Sbjct: 132 TYMNREKQALHEDTIYVSGERNNVQVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGL 191

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           ++ LTR + +   K    K ++ ++ G++ REG T V+S+K+PDP F  QTK KL ++EV
Sbjct: 192 KTVLTRTMNAIARKRNKIKDNEPNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEV 251

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           R +V+S V + L+ +L+ +P  A  I++K + A    +AARRARDL RRK VL+ + LPG
Sbjct: 252 RGIVDSLVGEVLTEFLDFNPNVADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPG 311

Query: 413 KLADCSERDPKK 424
           KLADCS RDP++
Sbjct: 312 KLADCSSRDPEE 323


>gi|119369972|gb|ABL68000.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 437

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 147/447 (32%), Positives = 204/447 (45%), Gaps = 36/447 (8%)

Query: 97  EVIMTRLHAGGKFNQ----KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEM---- 148
           EVIMT LHAGGKF++     +Y+ SGGLHGVGV+V NALS  +++ I+    + E     
Sbjct: 1   EVIMTVLHAGGKFDKTAGESAYRFSGGLHGVGVAVTNALSQRVEVEIQHHAILREQGMVA 60

Query: 149 ---SFINGILDNPLVVTGSAGNDTGTEVTFLPSSD-IFSVQDFNYDTLQHRLRELSFLNS 204
              +F  G                     F             N   L H LR  + L  
Sbjct: 61  IALAFTQGDGQRAADPRWKTAARAPMARGFRYGRTGSIDSAKINVRELTHLLRAKAILLP 120

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM--------QSPIRIQGSRDN 256
                     +   R       GGI      L R               +    +G    
Sbjct: 121 RSASEPHPPGAGTRRLEVQRRSGGIPRGNRRLSRTGHADFFGDLLSDGDTNGFAKGE--- 177

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
                A+ W+     N   + N IP  +GGTH SG R+ +   + S++E        K  
Sbjct: 178 -GAAWALCWSGNVMPNPETYVNLIPTSNGGTHESGFRAGVFEAVRSFMEHH-SLVPAKLK 235

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
           ++ DD       VLS ++ DP+F  QTK+KL S +   ++   + D L  WL  HP   K
Sbjct: 236 LVQDDVTGKMALVLSARVLDPQFQGQTKDKLTSRDAHKLMAQTMRDPLELWLNSHPGAGK 295

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
            + +    +   R    RA     RK    +A+LPGKL DC   D +++ELFLV+GDSAG
Sbjct: 296 AVAELATRSPRAR---TRAAQKNERKKGSGLATLPGKLTDCESEDIQRNELFLVDGDSAG 352

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--- 493
           GSAK  R +E QA+LPLRGK+LN      D++  +QE+  +  A+  GI   +F  +   
Sbjct: 353 GSAKAARDKEYQALLPLRGKVLNTWEVDADQIFKNQEVHNM--AVALGIEAHNFQADPDR 410

Query: 494 ---KLRYHKIIIMTDADVDGAHIRTLL 517
               LRY K +I+TDADVDG+HIRTLL
Sbjct: 411 VLAGLRYGKTMILTDADVDGSHIRTLL 437


>gi|307343812|emb|CBJ19511.1| gyrase B subunit [Micromonospora sp. GUI27]
          Length = 345

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 151/348 (43%), Positives = 221/348 (63%), Gaps = 8/348 (2%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199
            + G+++   + N    +PL   G A + TG+ V+F P  D+F   DF++ T+  RL+E+
Sbjct: 1   HKSGSVWRQHYTNSKP-SPLEK-GEATDLTGSAVSFWPDPDVFETIDFDFQTIYRRLQEM 58

Query: 200 SFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           +FLN  + I L+D+R       + RE+T  Y GGI  FV +L+  K P+ ++ +      
Sbjct: 59  AFLNRGITIHLLDERVAEDEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVVEFGAEE 118

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G RSALT  +  Y        K  
Sbjct: 119 EGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKK-LLKGD 177

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
             + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +P E
Sbjct: 178 EKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAE 237

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AK I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDS
Sbjct: 238 AKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDS 297

Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
           AGGSAKQGR    QAILP+RGKILNVE+AR D++L + E+  LITALG
Sbjct: 298 AGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 345


>gi|332272171|gb|AEE38769.1| DNA gyrase subunit beta [Aeromonas media]
          Length = 307

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 177/309 (57%), Positives = 230/309 (74%), Gaps = 3/309 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L+D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLLDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVER 462
           +GKILNVE+
Sbjct: 298 KGKILNVEK 306


>gi|170178296|gb|ACB10195.1| DNA gyrase subunit B [Kribbella flavida]
          Length = 368

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 163/366 (44%), Positives = 232/366 (63%), Gaps = 9/366 (2%)

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-----ITMFYK 226
            +TF PS D+F    ++Y+TL  R RE +FLN  +++ + D+R     E      +  Y 
Sbjct: 4   TITFWPSPDVFETTTYSYETLSTRFREYAFLNKGLELVIRDERPDHTPEGVPVEQSFKYD 63

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
            G+  +V YL   ++ +  + I  + +   D++S+++AM+W+  + E+V  F N I   +
Sbjct: 64  DGLVDYVKYLTGIRETVHSNVIAFEAAQADDSLSLEVAMQWSGSFQESVHTFANTINTHE 123

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTH  G R+ALT  + S+ E     KK +  + GDD REG T+++S+K+ +P+F  QTK
Sbjct: 124 GGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDVREGLTAIISVKLGNPQFEGQTK 183

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLTRRKG 403
            KL ++EV+  V+  VND L AW E++P E + I+ K    AS    A +       RKG
Sbjct: 184 TKLGNTEVKGFVQRVVNDRLGAWFEQNPAEGREIIRKATAAASARIAARKARDLARNRKG 243

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           +L    LPGKL+DC   +P++ E+++VEGDSAGGSAK GR  + QAILP+RGKILNVE+A
Sbjct: 244 LLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILNVEKA 303

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523
           R DK+L + E+  +I+ALGTGI +D FD  KLRYHKI+IM DADVDG HIRTLLLT  FR
Sbjct: 304 RIDKVLQNNEVQAIISALGTGIHED-FDEEKLRYHKIVIMADADVDGQHIRTLLLTLLFR 362

Query: 524 QMPSLI 529
            M  LI
Sbjct: 363 FMRPLI 368


>gi|308153086|dbj|BAJ22132.1| DNA gyrase subunit B [Streptomyces griseosporeus]
          Length = 320

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 127/321 (39%), Positives = 188/321 (58%), Gaps = 20/321 (6%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
             Y VSGGLHGVGVSVVNALSS + + ++ +G+ +   +  G+   PL     A  +TGT
Sbjct: 1   GGYAVSGGLHGVGVSVVNALSSKVAVEVRTDGHRWTQDYKMGVPTAPLAQ-HEATQETGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------- 215
            VTF    DIF   +++++TL  R +E++FLN  + I L D+R                 
Sbjct: 60  SVTFWADPDIFETTEYSFETLSRRFQEMAFLNKGLTIKLTDERESAKATAGADEAGADEK 119

Query: 216 PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHEN 272
            E + +T  Y+GGI  FV Y   R    +  + I ++    +  +S+++AM+WN GY E 
Sbjct: 120 DEAKTVTYHYEGGIVDFVKYLNARKGDVVHPTIIGLEAEDKDKSLSLEVAMQWNSGYSEG 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+
Sbjct: 180 VYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++E ++ V+  V + L+ WL+ +P EA  IV+K + A+  R AA
Sbjct: 240 KLSEPQFEGQTKTKLGNTEAKTFVQKAVYEHLNDWLDRNPNEAADIVRKGIQAATARVAA 299

Query: 393 RRARDLTRRKGVLDIASLPGK 413
           R+ARDLTRRKG+L+ ASLPGK
Sbjct: 300 RKARDLTRRKGLLETASLPGK 320


>gi|269308276|gb|ACZ34184.1| DNA gyrase subunit B [Aeromonas simiae]
          Length = 308

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 181/311 (58%), Positives = 232/311 (74%), Gaps = 4/311 (1%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G A   TGTEV F PS  IFS   F+Y+TL  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYETLAKRLRELSFLNSGVSIVLSDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL++ K P+          +D I +++AM+WNDGY E V
Sbjct: 60  R--DGREVNFCYEGGIKAFVEYLNQSKTPIHPKVFHFSTEQDGIGVEVAMQWNDGYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSI 332
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K S   GDD REG  +V+S+
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKMSAASGDDVREGLIAVISV 177

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV++ VE  + + ++ +L E+P +AKI+V K++DA+  R+AA
Sbjct: 178 KVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKMAEFLLENPSDAKIVVNKIIDAARAREAA 237

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 238 RKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILP 297

Query: 453 LRGKILNVERA 463
           L+GKILNVE+A
Sbjct: 298 LKGKILNVEKA 308


>gi|332272209|gb|AEE38788.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 307

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 179/310 (57%), Positives = 230/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLQDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R++QAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKDQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|30793732|gb|AAM52928.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 306

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 175/308 (56%), Positives = 229/308 (74%), Gaps = 2/308 (0%)

Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215
             PL   G + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+R 
Sbjct: 1   QAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER- 59

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            + RE+   Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V  
Sbjct: 60  -DGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYL 118

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
            TNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K+P
Sbjct: 119 LTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVP 178

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR+A
Sbjct: 179 DPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKA 238

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+G
Sbjct: 239 RELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 298

Query: 456 KILNVERA 463
           KILNVE+A
Sbjct: 299 KILNVEKA 306


>gi|307343842|emb|CBJ19526.1| gyrase B subunit [Micromonospora sp. CR39]
          Length = 340

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 145/343 (42%), Positives = 217/343 (63%), Gaps = 8/343 (2%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           + + I + G+++   + N    +PL   G A + TG+ V+F P  D+F   DF++ T+  
Sbjct: 1   MFVEIHKSGSVWRQHYTNSKP-SPLEK-GEATDRTGSAVSFWPDPDVFETIDFDFQTIYR 58

Query: 195 RLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           RL+E++FLN  + I L+D+R       + RE+T  Y GGI  FV +L+  K P+ ++ + 
Sbjct: 59  RLQEMAFLNRGITIHLLDERVAEDEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVVE 118

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
            +   + +S+++AM+WN+ Y E+V  F NNI   +GGTH  G RSALT  +  Y      
Sbjct: 119 FEAEEEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKK- 177

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
             K    + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W +
Sbjct: 178 LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFD 237

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
            +P EAK I++K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+
Sbjct: 238 RNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFI 297

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           VEGDSAGGSAKQGR    QAILP+RGKILNVE+AR D++L + 
Sbjct: 298 VEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNN 340


>gi|332272211|gb|AEE38789.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 307

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 178/310 (57%), Positives = 229/310 (73%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS V I L  +
Sbjct: 1   EPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELSFLNSGVSIRLQVE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGVIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R++QAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKDQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|332272277|gb|AEE38822.1| DNA gyrase subunit beta [Aeromonas simiae]
 gi|332272279|gb|AEE38823.1| DNA gyrase subunit beta [Aeromonas simiae]
          Length = 308

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 182/311 (58%), Positives = 232/311 (74%), Gaps = 4/311 (1%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G A   TGTEV F PS  IFS   F+Y+TL  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYETLAKRLRELSFLNSGVSIVLSDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + REI   Y+GGI+AFV YL++ K P+          +D I +++AM+WNDGY E V
Sbjct: 60  R--DGREINFCYEGGIKAFVEYLNQSKTPIHPKVFHFSTEQDGIGVEVAMQWNDGYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSI 332
            CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K S   GDD REG  +V+S+
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKMSAASGDDVREGLIAVISV 177

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV++ VE  + + ++ +L E+P +AKI+V K++DA+  R+AA
Sbjct: 178 KVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKMAEFLLENPSDAKIVVNKIIDAARAREAA 237

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 238 RKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILP 297

Query: 453 LRGKILNVERA 463
           L+GKILNVE+A
Sbjct: 298 LKGKILNVEKA 308


>gi|332272197|gb|AEE38782.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
 gi|332272199|gb|AEE38783.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
          Length = 307

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 180/310 (58%), Positives = 230/310 (74%), Gaps = 3/310 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G A   TGTEV F PS  IFS   F+Y+ L  RLRELSFL S V I L+D+
Sbjct: 1   EPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLKSGVSIRLMDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V
Sbjct: 60  R--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
            CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD REG  +V+S+K
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVK 177

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++DA+  R+AAR
Sbjct: 178 VPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAAR 237

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           +AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL
Sbjct: 238 KARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 297

Query: 454 RGKILNVERA 463
           +GKILNVE+A
Sbjct: 298 KGKILNVEKA 307


>gi|124039609|dbj|BAF45400.1| DNA gyrase beta subunit [uncultured bacterium]
          Length = 314

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 142/317 (44%), Positives = 208/317 (65%), Gaps = 3/317 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NAL+ W  ++++R G IY+ S+  G    PL   G   + +GT   F   S IFS  +++
Sbjct: 1   NALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEVG-VSDGSGTTTIFKADSQIFSTTEYD 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLRE+++LN  +++ + D++S + R      +GGI  FV +L+R+++   + PI
Sbjct: 60  FETLTDRLREIAYLNKGLEVYIYDEQSDQERTYYF--EGGITGFVRHLNRNREVRHRQPI 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I    D+  +++A+++NDGY ++ L F N +   DGGTHL+G RSALTR    Y  KS 
Sbjct: 118 YITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTIDGGTHLTGFRSALTRAFNDYAHKSK 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K    +++GDD REG  +++S+K+P+P+F  QTK KL + E++S VES V + LS +L
Sbjct: 178 FLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVTEQLSLYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE P + K I++K + A+  R+AAR+ARDL  RK  LD  +LPGKLADCSERD    ELF
Sbjct: 238 EERPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLCELF 297

Query: 429 LVEGDSAGGSAKQGRSR 445
           LVEGDSAGGSAKQGR+R
Sbjct: 298 LVEGDSAGGSAKQGRNR 314


>gi|190148832|gb|ACE63391.1| DNA gyrase B subunit [Pseudonocardia antarctica]
          Length = 374

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 141/375 (37%), Positives = 207/375 (55%), Gaps = 41/375 (10%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFN 188
           ALS+ L + ++R+G I+   +   +    LV  G+    DTGT +T+     IF    + 
Sbjct: 1   ALSTALDVEVRRDGQIWRQHYEYAVP-GELVEAGTTKKSDTGTTITYWADPKIFETTSYT 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDK----------------------------------- 213
            +T++ RL+E +FLN  + + L D+                                   
Sbjct: 60  LETIRRRLQEQTFLNKGLTMVLRDERRPEKPAGVPSSDAVDSDGNPIEAPVPEIDADAEP 119

Query: 214 ----RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
                  +P+E    Y  G+E FV++L++ K P+ +  +   G      +++AM+WN GY
Sbjct: 120 DAEGYVAKPKEYVFHYPNGLEDFVAHLNKSKDPIHRKIVSYTGEGPGHQVEVAMQWNSGY 179

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E+V  F N I   +GGTH  G R ALT  +  Y       K+   ++ GDD REG  ++
Sbjct: 180 SESVYTFANTINTHEGGTHEEGFRHALTATVNKYARDKKLIKEKDPALSGDDIREGLAAI 239

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK IV K + ++  R
Sbjct: 240 VSVKVSEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEAKTIVTKAVSSAQAR 299

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AARRAR+L RRK   DI  LPGKL+DC  RDP+  EL++VEGDSAGGSAK GR   +QA
Sbjct: 300 LAARRARELVRRKSAGDIGGLPGKLSDCRSRDPESCELYIVEGDSAGGSAKAGRDSMHQA 359

Query: 450 ILPLRGKILNVERAR 464
           ILP+RGKI+NVE+AR
Sbjct: 360 ILPIRGKIINVEKAR 374


>gi|158834216|gb|ABW81912.1| DNA gyrase subunit B [Candidatus Regiella insecticola]
          Length = 230

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 7/230 (3%)

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           +E++E Y I+ +L             ++   L   I +   + K+I      +    +  
Sbjct: 1   DEAMEQYQISLALDGAALHTNAYAPALAGQALEKLIIEHYAVQKIIARMERRYPGALLNH 60

Query: 616 AVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIA 668
            +       E+  ++E        L   LN   ++          +   +  + L++   
Sbjct: 61  LIYQPNLLQETLANKETVQQWIDSLVILLNQNEQQGSHYSAIVRENTERHLFEPLLRTRT 120

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            GV   + L+   I S   +       ++         +   G ++ + G  + LD +  
Sbjct: 121 HGVDTDYPLDFDFIHSGEYRKLCQLGEKLRGLLEQDAFVERGGRRLAVDGFEAALDWLVK 180

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             R+G+++QRYKGLGEMN  QLWETT++P  R +LRV + DA  AD LF+
Sbjct: 181 ESRRGLTIQRYKGLGEMNPDQLWETTMDPANRRMLRVMVKDAIAADQLFT 230


>gi|323364327|gb|ADX42733.1| DNA gyrase subunit B [Bacillus ginsengi]
          Length = 315

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 155/316 (49%), Positives = 221/316 (69%), Gaps = 2/316 (0%)

Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQI 208
           F  G + + L V G +  +TG+EV F    +IF+    + YD L HRL+EL++LN  ++I
Sbjct: 1   FERGQISDELKVIGDSE-ETGSEVRFKADPEIFTETTVYEYDILAHRLQELAYLNRGIRI 59

Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
           +L D+R  E R  +  Y+GGI+++V +++  K+P+ + PI I+G +D I++++AM++N G
Sbjct: 60  TLSDERGEEERSDSYHYEGGIKSYVQHINEDKEPIHEEPIFIEGEKDGIAVEVAMQYNAG 119

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
           Y  N+  F NNI   +GGTH SG ++ALTR I  Y  K+   K +  ++ G+D REG T+
Sbjct: 120 YASNIFSFANNINTYEGGTHESGFKTALTRVINDYARKNGLLKDNDANLSGEDAREGLTA 179

Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
           ++SIK PDP+F  QTK KL +SEV  +V S  ++GL  +L E+P  A++IV K L A+  
Sbjct: 180 IISIKHPDPQFEGQTKTKLGNSEVSQIVNSLFSEGLERFLMENPTGARMIVDKGLMAARA 239

Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448
           R AA++AR+LTRRK VL+I++LPGKL+DCS RDP  SEL++VEGDSAGGSAK GR R  Q
Sbjct: 240 RVAAKKARELTRRKSVLEISNLPGKLSDCSSRDPAISELYIVEGDSAGGSAKNGRDRHFQ 299

Query: 449 AILPLRGKILNVERAR 464
           AILPLRGKILNVE+A 
Sbjct: 300 AILPLRGKILNVEKAH 315


>gi|307343828|emb|CBJ19519.1| gyrase B subunit [Micromonospora sp. GUI61]
          Length = 340

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 151/343 (44%), Positives = 219/343 (63%), Gaps = 8/343 (2%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           +   + N    +PL   G A + TG+ V+F P  D+F   DF++ T+  RL+E++FLN  
Sbjct: 1   WRQHYTNSKP-SPLEK-GEATDRTGSAVSFWPDPDVFETIDFDFQTIYRRLQEMAFLNRG 58

Query: 206 VQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           + I L+D+R       + RE+T  Y GGI  FV +L+  K P+ ++ +  +   + +S++
Sbjct: 59  ITIHLLDERVAEDEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVVEFEAEEEGMSLE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN+ Y E+V  F NNI   +GGTH  G RSALT  +  Y        K    + G+
Sbjct: 119 IAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKK-LLKGDEKLSGE 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +P EAK I++
Sbjct: 178 DIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQ 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDSAGGSAK
Sbjct: 238 KASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           QGR    QAILP+RGKILNVE+AR D++L + E+  LITALGT
Sbjct: 298 QGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 340


>gi|148762363|dbj|BAF63883.1| DNA gyrase subunit B [Halobacillus karajensis]
          Length = 329

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 143/332 (43%), Positives = 201/332 (60%), Gaps = 8/332 (2%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTE 172
           YKVSGGLHGVG SVVNALS WL++ I R+G  +   F N G+    L         TGT 
Sbjct: 1   YKVSGGLHGVGASVVNALSEWLEVHICRDGEKFCQRFENGGVPVTSLENK-GTTRKTGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P   IFS   FN++TL  RLRE +FL    +I LID+R+ E       Y  G+ +F
Sbjct: 60  IRFKPDPTIFSTTKFNFETLSERLREAAFLLKGFRIVLIDERN-ETVREEYQYDDGLVSF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+  K  L    +  +G+   I  D A ++NDG+ EN+L F NN+  KDGGTH SG 
Sbjct: 119 VEYLNEEKDTLHS-VVSFEGTHGEIEADFAFQFNDGFAENILSFVNNVRTKDGGTHESGA 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSS 350
           ++A+TR    Y  ++   K+  +++ G+D REGFT+V+S ++P+   +F  QTK KL +S
Sbjct: 178 KTAITRVFNDYARRAQLLKEKDKNLEGNDIREGFTAVISARIPEGLLQFEGQTKSKLGTS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIA 408
           E RS V+  V + LS +LEE+P  A +++KK + A   R+AAR+AR+   + +K      
Sbjct: 238 EARSAVDGVVAEQLSYFLEENPDVASMLIKKAIKAKEAREAARKAREDARSGKKKKRKET 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
            L GKL     ++ +K+EL+LVEGDSAGGSAK
Sbjct: 298 LLSGKLTPAQSKNAQKNELYLVEGDSAGGSAK 329


>gi|332272105|gb|AEE38736.1| DNA gyrase subunit beta [Aeromonas sp. MDC 2468]
          Length = 309

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 180/311 (57%), Positives = 233/311 (74%), Gaps = 3/311 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PSS IFS   F+Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSSTIFSDTLFHYEILAKRLRELSFLNSGVSILLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFTTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSI 332
            CFTNNIPQ+DGGTHL G R+ALTR + +Y+++   SKK K S   GDD REG  +V+S+
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDREDYSKKAKMSAASGDDVREGLIAVISV 178

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AA
Sbjct: 179 KVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPADAKIVVNKIIDAARAREAA 238

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 239 RKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILP 298

Query: 453 LRGKILNVERA 463
           L+GKILNVE+A
Sbjct: 299 LKGKILNVEKA 309


>gi|332272107|gb|AEE38737.1| DNA gyrase subunit beta [Aeromonas sp. MDC 2472]
 gi|332272109|gb|AEE38738.1| DNA gyrase subunit beta [Aeromonas sp. MDC 2467]
          Length = 309

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 180/311 (57%), Positives = 233/311 (74%), Gaps = 3/311 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PSS IFS   F+Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSSTIFSDTLFHYEILAKRLRELSFLNSGVSILLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFTTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSI 332
            CFTNNIPQ+DGGTHL G R+ALTR + +Y+++   SKK K S   GDD REG  +V+S+
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDREDYSKKAKMSAASGDDVREGLIAVISV 178

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AA
Sbjct: 179 KVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAA 238

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 239 RKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILP 298

Query: 453 LRGKILNVERA 463
           L+GKILNVE+A
Sbjct: 299 LKGKILNVEKA 309


>gi|294809109|ref|ZP_06767827.1| DNA gyrase, B subunit, C-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294443663|gb|EFG12412.1| DNA gyrase, B subunit, C-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 339

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 146/288 (50%), Positives = 188/288 (65%), Gaps = 7/288 (2%)

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             +K K  + GDD REG T+V+S+K+ +P+F  QTK KL ++EV   V+  V + L+ +L
Sbjct: 1   MLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLAYYL 60

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EEHP EAK IV KV+ A+  R AAR+AR++ +RK  +    LPGKLADCS++DP K ELF
Sbjct: 61  EEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELF 120

Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           LVEGDSAGG+AKQGR+R  QAILPLRGKILNVE+A + K L S EI  + TALG  IG D
Sbjct: 121 LVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTD 180

Query: 489 SFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
                    KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I NG+LYI  PPLY  
Sbjct: 181 EDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVIQNGYLYIATPPLYLC 240

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDLRN 589
            +GK  +Y   +   + ++       E  +        G ++   L  
Sbjct: 241 KKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWE 288



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 54/66 (81%)

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+
Sbjct: 273 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 332

Query: 797 LPSALD 802
             + +D
Sbjct: 333 TYANID 338


>gi|332272111|gb|AEE38739.1| DNA gyrase subunit beta [Aeromonas sp. MDC 2469]
 gi|332272113|gb|AEE38740.1| DNA gyrase subunit beta [Aeromonas sp. MDC 2473]
          Length = 309

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 180/311 (57%), Positives = 233/311 (74%), Gaps = 3/311 (0%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + + TGTEV F PSS IFS   F+Y+ L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDSASGTGTEVRFWPSSTIFSDTLFHYEILAKRLRELSFLNSGVSILLQDE 60

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D I +++AM+WND Y E V
Sbjct: 61  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFTTEQDGIGVEVAMQWNDAYQEGV 118

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSI 332
            CFTNNIPQ+DGGTHL G R+ALTR + +Y+++   SKK K S   GDD REG  +V+S+
Sbjct: 119 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDREDYSKKAKMSAASGDDVREGLIAVISV 178

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AA
Sbjct: 179 KVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPADAKIVVNKIIDAARAREAA 238

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 239 RKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILP 298

Query: 453 LRGKILNVERA 463
           L+GKILNVE+A
Sbjct: 299 LKGKILNVEKA 309


>gi|205363012|gb|ACI03947.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 323

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 180/325 (55%), Positives = 241/325 (74%), Gaps = 4/325 (1%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R+G I++ ++ +G    PL V G+      T++ F PS   F+  +F Y+ L  RLRELS
Sbjct: 1   RKGEIFQQTYCHGEPQAPLAVVGTTDTTG-TKIRFWPSDQTFTNVEFVYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--IS 258
           FLNS V I L D R  E +     ++GGI+AFV++L+R+K P+ Q        R    I 
Sbjct: 60  FLNSGVSIILQDMR-EEDKSDHFMFEGGIQAFVTHLNRNKTPVHQKIFYFDSERKEDGIV 118

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++AM+WND Y EN+ C+TNNIPQ+DGG HLSG RSALTR + S+++K   SKK K S  
Sbjct: 119 VEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSAS 178

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK++
Sbjct: 179 GDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMV 238

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
             K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP +SEL++VEGDSAGGS
Sbjct: 239 CSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGS 298

Query: 439 AKQGRSRENQAILPLRGKILNVERA 463
           AKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 299 AKQGRNRKNQAILPLKGKILNVEKA 323


>gi|124039605|dbj|BAF45398.1| DNA gyrase beta subunit [uncultured bacterium]
          Length = 314

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 142/317 (44%), Positives = 208/317 (65%), Gaps = 3/317 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS W  ++++R G IY+ S++ G    PL   G     +GT   F+  S IFS  +++
Sbjct: 1   NALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFMADSQIFSTTEYD 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           ++TL  RLRE+++LN  +++ + D++S + R      +GGI  FV +L+R+++   + PI
Sbjct: 60  FETLTDRLREIAYLNKGLEVYIYDEKSDQERTYYF--EGGITGFVRHLNRNREVRHRHPI 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            I    D+  +++A+++NDGY ++   F N +   DGGTHL+G RSALTR    Y  KS 
Sbjct: 118 YITRKSDSTILEVAIQYNDGYSDSTPTFANCVNTIDGGTHLTGFRSALTRAFNDYAHKSK 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K    +++GDD REG  +++S+K+P+P+F  QTK KL + E++S VES V + LS +L
Sbjct: 178 FLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVTEQLSLYL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EEH  + K I++K + A+  R+AAR+ARDL  RK  LD  +LPGKLADCSERD    ELF
Sbjct: 238 EEHLDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLCELF 297

Query: 429 LVEGDSAGGSAKQGRSR 445
           LVEGDSAGGSAKQGR+R
Sbjct: 298 LVEGDSAGGSAKQGRNR 314


>gi|164456757|dbj|BAF97871.1| gyrase B subunit [Vibrio proteolyticus]
          Length = 238

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 128/240 (53%), Positives = 175/240 (72%), Gaps = 3/240 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G  + PL V G   + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ FS  +F+YD L  RLRELSFLNS V I LID+R  +       Y+GGI+AF
Sbjct: 60  IRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKH-DHFMYEGGIQAF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           V +L+ +K P++         R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G
Sbjct: 119 VDHLNTNKTPIIDKIFHFNFEREDGIAVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAG 178

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R+ALTR + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSE
Sbjct: 179 FRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 238


>gi|307343816|emb|CBJ19513.1| gyrase B subunit [Micromonospora sp. GUI34]
          Length = 344

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 150/345 (43%), Positives = 218/345 (63%), Gaps = 8/345 (2%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           +   + +     PL   G A + TG+ V+F P  D+F   DF++ T+  RL+E++FL   
Sbjct: 1   WRQQYHHSKP-TPLEK-GEATDRTGSAVSFWPDPDVFETVDFDFHTIYRRLQEMAFLTRG 58

Query: 206 VQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           + I L+D+R       + RE+T  Y+GGI  FV +L+  K P+ ++ +        +S++
Sbjct: 59  LTIHLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKSPIHKTVVEFGAEETGMSVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN+ Y E+V  F NNI   +GGTH  G R+ALT  +  Y        K    + G+
Sbjct: 119 IAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGA-EKKLLKGDERLSGE 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ DP+F  QTK KL ++ V+  V+   N+ L  W + +P EAKII++
Sbjct: 178 DIREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQ 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDSAGGSAK
Sbjct: 238 KASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           QGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 298 QGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 342


>gi|189418941|gb|ACD93716.1| gyrase B subunit [Mangrovibacter plantisponsor]
          Length = 253

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 131/254 (51%), Positives = 181/254 (71%), Gaps = 3/254 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L+L I+R+G ++   + +G+   PL VTG     TGT V F PS 
Sbjct: 1   LHGVGVSVVNALSQKLELVIRRDGKVHNQVYQHGVPTAPLAVTGETE-KTGTMVRFWPSL 59

Query: 180 DIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           + F+   +F Y+ L  RLRELSFLNS V I LIDKR  E ++    Y+GGI+AFV YL++
Sbjct: 60  ETFTNVVEFEYEILAKRLRELSFLNSGVSIRLIDKR-VEGKQDHFHYEGGIKAFVEYLNK 118

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR
Sbjct: 119 NKTPIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y++    SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES
Sbjct: 179 TLNTYMDNEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVES 238

Query: 359 FVNDGLSAWLEEHP 372
            +N+ L+ +L+E+ 
Sbjct: 239 QMNERLADYLQENR 252


>gi|328497267|dbj|BAK18797.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 273

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 7/273 (2%)

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL + 
Sbjct: 1   DVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASN 60

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           ++     +    +  I+   L   +      ++ I      +D   +   +     + + 
Sbjct: 61  AVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLDVDK 120

Query: 627 DQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFVLEG 679
            Q              + NR      + +  +  + +  ++ ++  R   G +   VL  
Sbjct: 121 LQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQVLPM 180

Query: 680 SSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRY 739
            +  S   +  R  S  + +       ++       IT        +    ++G  +QR+
Sbjct: 181 GAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQVQRF 240

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772
           KGLGEMNA QLWETT+NPDTR LL+V+I DA  
Sbjct: 241 KGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVA 273


>gi|158834214|gb|ABW81911.1| DNA gyrase subunit B [Candidatus Regiella insecticola]
          Length = 230

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 7/230 (3%)

Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615
           +E++E Y I+ +L             ++   L   I +   + K+I      + +  +  
Sbjct: 1   DEAMERYQISLALDGAALHANAYAPALAGQALEKLITEHYAVQKIIARMERRYPRALLNH 60

Query: 616 AVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIA 668
            +       E+  ++E        L   LN   ++          +      + L++   
Sbjct: 61  LIYQPNLLQETLANKETVQQWIDSLVILLNQNEQQGSHYSAIVRENTEHQLFEPLLRTRT 120

Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728
            GV   +  +   I S   +       ++         +   G ++ +    + LD +  
Sbjct: 121 HGVDTDYPXDFDFIHSGXYRKLCQLGEKLRGLLEQDAFVERGGRRLAVDSFEAALDWLVK 180

Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778
             R+G+++QRYKGLGEMN  QLWETT++P  R +LRV + DA  AD LF+
Sbjct: 181 ESRRGLTIQRYKGLGEMNPDQLWETTMDPANRRMLRVMVKDAIAADQLFT 230


>gi|148762359|dbj|BAF63881.1| DNA gyrase subunit B [Halobacillus dabanensis]
          Length = 329

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 145/332 (43%), Positives = 204/332 (61%), Gaps = 8/332 (2%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTE 172
           YKV GGLHGVG SVVNALS WL++ I R+G  Y   F N G+    L         TGT 
Sbjct: 1   YKVFGGLHGVGASVVNALSEWLEVHICRDGEKYYQRFENGGVPVTSLENK-GTTRKTGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F P   IFSV  FN++TL  RLRE +FL    +I LID+R+ E  +    Y  G+ +F
Sbjct: 60  IRFKPDPTIFSVIKFNFETLSERLREAAFLLKGFRIILIDERN-ETVKEEYQYDDGLVSF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+  K  L Q  +  +GS+  I +D A ++NDG+ EN+L F NN+  KDGGTH SG 
Sbjct: 119 VEYLNEEKDTLHQ-VVSFEGSQAGIEVDFAFQFNDGFAENILSFVNNVRTKDGGTHESGA 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSS 350
           ++ +TR    Y  ++   K+  +++ G+D REGFT+V+S ++P+   +F  QTK KL +S
Sbjct: 178 KTVITRVFNDYARRTQLLKEKDKNLEGNDIREGFTAVISARIPEELLQFEGQTKSKLGTS 237

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIA 408
           E RS V+  V + LS +LEE+P  A +++KK + A   R+AAR+AR+   + +K      
Sbjct: 238 EARSSVDGVVAEQLSYFLEENPDVASMLIKKAIKAKEAREAARKAREDARSGKKRKRKDT 297

Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
            L GKL     ++ +K+EL+LVEGDSAGGSAK
Sbjct: 298 LLSGKLTPAQSKNAQKNELYLVEGDSAGGSAK 329


>gi|219536320|gb|ACL18065.1| DNA gyrase subunit B [Pseudomonas sp. TLC13:6-6.5cm-2G]
          Length = 284

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 145/286 (50%), Positives = 202/286 (70%), Gaps = 3/286 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TGT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTGTQIHFK 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL
Sbjct: 60  PSDLTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           + +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSAL
Sbjct: 118 NTNKTPVNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSAL 177

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ V
Sbjct: 178 TRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV 237

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           E  +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRK
Sbjct: 238 EQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRK 283


>gi|218139461|gb|ACK57888.1| GyrB [Actinobaculum schaalii]
          Length = 390

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 164/391 (41%), Positives = 237/391 (60%), Gaps = 26/391 (6%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           ++  +KR+G ++ +++ NG+     +  G    +TGT  TF  + DIF   D++++TL+ 
Sbjct: 1   METIVKRDGYVWRIAYENGVP-TRELERGEETTETGTTQTFWANPDIFETTDYDFETLRK 59

Query: 195 RLRELSFLNSSVQISLIDKR--------------------SPEPREITMFYKGGIEAFVS 234
           R  +++FLN +++I+LID+R                     P  RE++  Y GG+  +V 
Sbjct: 60  RFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGEAAAEVPAKREVSYCYSGGLLDYVK 119

Query: 235 YLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           +L+  KK        I  +       I +++AM+W   Y E+V  F N I   +GG H  
Sbjct: 120 FLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFANTINTTEGGMHEE 179

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G RSALT  I  Y  +    K    ++ GDD REG T+V+S+K+ +P+F  QTK KL ++
Sbjct: 180 GFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTAVISVKLGNPQFEGQTKTKLGNT 239

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E R+ V+  +   LS WL+ HP +AK I++K   A   R AAR+AR+ TRRK VL+ AS+
Sbjct: 240 EARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKAREATRRKSVLESASM 299

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           PGKL DC+   P++ E+F+VEGDSAGGSA  GR  E+QAI+P+RGKILNVE+AR D+ LS
Sbjct: 300 PGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKILNVEKARLDRALS 359

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           S  I +LITA GTGIG D FDI+KL  HKII
Sbjct: 360 SDTIQSLITAFGTGIG-DEFDIDKLXXHKII 389


>gi|223674726|gb|ACN13059.1| DNA gyrase subunit B [bacterium 2134.2]
          Length = 222

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 115/223 (51%), Positives = 153/223 (68%), Gaps = 4/223 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++ +G     L V G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQGALKVVGET 60

Query: 166 GNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            + TGT V F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       
Sbjct: 61  -DQTGTMVRFWPSYQTFTNQTEFQYEILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFH 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GGI+AFV YL+++K P+  +       +D+I +++A++WNDG+ EN+ CFTNNIPQ+D
Sbjct: 118 YEGGIKAFVEYLNKNKTPIHPTVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRD 177

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GGTHL+G R+A+TR + +Y++K   SKK K S  GDD REG T
Sbjct: 178 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 220


>gi|328497257|dbj|BAK18792.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 272

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 129/272 (47%), Gaps = 7/272 (2%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL
Sbjct: 1   TDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYL 60

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            + ++     +    +  I+   L   +      ++ I      +D   +   +     +
Sbjct: 61  ASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLD 120

Query: 624 CESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFV 676
            +  Q              + NR      + +  +  + +  ++ ++  R   G +   V
Sbjct: 121 VDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQV 180

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISM 736
           L   +  S   +  R  S  + +       ++       IT        +    ++G  +
Sbjct: 181 LPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQV 240

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768
           QR+KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 241 QRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 272


>gi|307343776|emb|CBJ19493.1| gyrase B subunit [Micromonospora fulviviridis]
          Length = 342

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 151/345 (43%), Positives = 221/345 (64%), Gaps = 8/345 (2%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           +   + N     PL   G     TG+ V+F P  D+F   DF++ T+  RL+E++FLN +
Sbjct: 1   WRRQYHNSKP-TPLEK-GETTGRTGSAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRA 58

Query: 206 VQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           ++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +      + +S++
Sbjct: 59  LRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKNPIHKTVVEFGAEEEGMSVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        K    + G+
Sbjct: 119 IAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGA-EKKLLKGDEKLSGE 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +P EAK+I++
Sbjct: 178 DIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKMIIQ 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDSAGGSAK
Sbjct: 238 KASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485
           QGR    QAILP+RGKILNVE+AR D++L + E+  LITALGTGI
Sbjct: 298 QGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 342


>gi|18916414|dbj|BAB85502.1| DNA gyrase subunit B [Blastobacter denitrificans]
          Length = 235

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 137/237 (57%), Positives = 175/237 (73%), Gaps = 2/237 (0%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
           +LHAGGKF+Q SYKVSGGLHGVGVSVVNALSS L+LRI RE   + + F +G    PL V
Sbjct: 1   QLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLQLRIWREDKEHLIEFAHGDAVAPLKV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G A    GTEVTFL S++ F + +++Y TL+HRLREL+FLNS V I L D R    +  
Sbjct: 61  VGEAQGRRGTEVTFLASTETFKMVEYDYATLEHRLRELAFLNSGVHIVLSDMRHAVEKRE 120

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281
            MFY GG+E FV YLDR+KK ++ SPI ++   + I+++ A+ WND YHENVLCFTNNIP
Sbjct: 121 EMFYSGGVEEFVRYLDRNKKAIVPSPIMVRSEVNGITVEAALWWNDSYHENVLCFTNNIP 180

Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           Q+DGGTHL+G R ALTRQ+  Y +    +KK+K ++ GDDCREG T+VLS+K+PDP+
Sbjct: 181 QRDGGTHLAGFRGALTRQVNGYADAH--AKKEKIALTGDDCREGLTAVLSVKVPDPK 235


>gi|307343806|emb|CBJ19508.1| gyrase B subunit [Micromonospora sp. GUI16]
          Length = 340

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 151/343 (44%), Positives = 222/343 (64%), Gaps = 8/343 (2%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205
           +   + N    +PL   G A + TG+ V+F P  D+F   DF++ T+  RL+E++FLN +
Sbjct: 1   WRQHYTNSKP-SPLEK-GEATDRTGSAVSFWPDPDVFETVDFDFQTIYRRLQEMAFLNRA 58

Query: 206 VQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           ++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +  +   + +S++
Sbjct: 59  LRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFEAEEEGMSLE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        K    + G+
Sbjct: 119 IAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LLKGDEKLSGE 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   ND L  W + +P EAK+I+ 
Sbjct: 178 DIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIIT 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
           K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEGDSAGGSAK
Sbjct: 238 KASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAK 297

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           QGR    QAILP+RGKILNVE+AR D++L + E+  LITALGT
Sbjct: 298 QGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 340


>gi|195941192|ref|ZP_03086574.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           EC4024]
          Length = 411

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 143/418 (34%), Positives = 212/418 (50%), Gaps = 10/418 (2%)

Query: 152 NGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL 210
           NG     L V G+    +TGT V F P    F    F+   L H L+  + L   V+I+ 
Sbjct: 1   NGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSPRFSVSRLTHLLKAKAVLCPGVEITF 60

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM-RWNDGY 269
            D  +   +      + G+  ++         L + P       D  ++D A+    +G 
Sbjct: 61  KDHVNNTEQSWRY--EKGLNDYLCEAVNGLPTLPEKPFVGNFEGDTEAVDWALLWLPEGG 118

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
                 + N IP   GGTH++GLR  L   +  + E      +    +  +D  +    V
Sbjct: 119 ELLTESYVNLIPTLLGGTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYV 177

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           LS+KM DP+F+ QTKE+L S +  + V   V D  + WL ++   A+++ +  + ++   
Sbjct: 178 LSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFTLWLNQNVQAAEMLAEMAISSAQ-- 235

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
               RA     RK +    +LPGKLADC+ +D  ++ELFLVEGDSAGGSAKQ R RE QA
Sbjct: 236 -RRLRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQA 294

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           I+PL+GKILN      D++L+SQE+  +  ++  GI  DS D+++LRY KI I+ DAD D
Sbjct: 295 IMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGIDPDSDDLSQLRYGKICILADADSD 352

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           G HI TLL   F +   +L+ NG +++  PPLY I  GK + Y   EE     L    
Sbjct: 353 GLHIATLLCALFVKHFRALVKNGHVHVALPPLYRIDLGKEVYYALTEEEKAGVLEQLK 410


>gi|223674708|gb|ACN13050.1| DNA gyrase subunit B [Erwinia billingiae]
          Length = 222

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 115/225 (51%), Positives = 153/225 (68%), Gaps = 4/225 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++   +++G+   PL VTG  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET 60

Query: 166 GNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            + TGT V F PS   F+   DF Y+ L  RLRELSFLNS V I L  +   + R+    
Sbjct: 61  -DLTGTRVRFWPSHQTFTNVTDFEYEILAKRLRELSFLNSGVSIKL--EDKRDARQDHYH 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+D
Sbjct: 118 YEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 177

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           GGTHL G R+A+TR + +Y++K   SKK K S  GDD REG T +
Sbjct: 178 GGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLTXI 222


>gi|19909677|dbj|BAB87034.1| DNA gyrase subunit B [Thermotoga sp. MI9]
          Length = 245

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 146/249 (58%), Gaps = 11/249 (4%)

Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161
            LHAGGKF++ SYK+SGGLHGVGVSVVNALS WL++R+ R+G IY   +  G    P+ V
Sbjct: 1   VLHAGGKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEV 60

Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221
            G   +  GT V F P   IFS  +F+ D L+HRLRE++FL   ++I   D+ + E    
Sbjct: 61  IGET-DKHGTIVRFKPDPLIFSETEFDPDVLEHRLREIAFLVPGLKIEFEDRINGEK--K 117

Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-------DNISIDLAMRWNDGYHENVL 274
           T  + GGI  +V YL+R KK L       +  +       D + +++A ++ D Y E+++
Sbjct: 118 TFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIV 177

Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
            F N I   DGGTH++  +S LTR +  Y +K    K    S  G+D REG T+V+S+ +
Sbjct: 178 SFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYV 236

Query: 335 PDPRFSSQT 343
            +P F  QT
Sbjct: 237 KNPEFEGQT 245


>gi|169248048|gb|ACA51807.1| DNA gyrase subunit B [Aliivibrio logei]
 gi|169248050|gb|ACA51808.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 309

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 179/311 (57%), Positives = 233/311 (74%), Gaps = 4/311 (1%)

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL V G   + TGT++ F PS   F+  +F YD L  RLRELSFLNS V I L D R
Sbjct: 1   PQAPLAVIG-TTDTTGTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR 59

Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHEN 272
             E +     ++GGI+AFV++L+R+K P+ Q        R    I +++AM+WND Y EN
Sbjct: 60  -EEDKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQWNDSYQEN 118

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           + C+TNNIPQ+DGG HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+S+
Sbjct: 119 IFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSV 178

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AA
Sbjct: 179 KVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAA 238

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 239 RKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILP 298

Query: 453 LRGKILNVERA 463
           L+GKILNVE+A
Sbjct: 299 LKGKILNVEKA 309


>gi|169248040|gb|ACA51803.1| DNA gyrase subunit B [Aliivibrio logei]
 gi|169248042|gb|ACA51804.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 306

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 176/308 (57%), Positives = 230/308 (74%), Gaps = 4/308 (1%)

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G+   PL V G   + TGT++ F PS   F+  +F YD L  RLRELSFLNS V I L D
Sbjct: 1   GVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANIEFVYDILAKRLRELSFLNSGVSIRLQD 59

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYH 270
            R  E +     ++GGI+AFV++L+R+K P+ Q        R    I +++AM+WND Y 
Sbjct: 60  MR-EEDKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQWNDSYQ 118

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN+ C+TNNIPQ+DGG HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+
Sbjct: 119 ENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVV 178

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+
Sbjct: 179 SVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARARE 238

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR++TRRKG LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAI
Sbjct: 239 AARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAI 298

Query: 451 LPLRGKIL 458
           LPL+GKIL
Sbjct: 299 LPLKGKIL 306


>gi|223674712|gb|ACN13052.1| DNA gyrase subunit B [Erwinia billingiae]
          Length = 222

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 115/223 (51%), Positives = 152/223 (68%), Gaps = 4/223 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG ++   +++G+   PL VTG  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET 60

Query: 166 GNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            + TGT V F PS   F+   DF Y+ L  RLRELSFLNS V I L  +   + R+    
Sbjct: 61  -DLTGTRVRFWPSHQTFTNVTDFEYEILAKRLRELSFLNSGVSIKL--EDKRDARQDHYH 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+D
Sbjct: 118 YEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 177

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GGTHL G R+A+TR + +Y++K   SKK K S  GDD REG T
Sbjct: 178 GGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 220


>gi|321117358|dbj|BAJ72156.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 183/336 (54%), Positives = 239/336 (71%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS-DIFSVQDFNYDTLQHRLRE 198
           +REGN +    I+G+    L V G   + TGT V F P      +V +F Y  L  RL E
Sbjct: 1   RREGNXHXQXXIHGVPQAALNVPGET-DLTGTRVRFWPXHXTFTNVVEFEYKILAKRLXE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIELEDKRDGKN--DHYHYXGGIKAFVEYLNKNKTPIHPNAFYFSTEKDCIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIXCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L EHP +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLEHPGDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RAR++TR KG LD+A LPGKLADC ERDP   E++ VEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFEIYXVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+NQAI PL+GKILNVE+ RFDKML+SQE 
Sbjct: 298 AKQGRNRKNQAIXPLKGKILNVEKXRFDKMLASQEG 333


>gi|190148846|gb|ACE63398.1| DNA gyrase B subunit [Pseudonocardia dioxanivorans CB1190]
          Length = 330

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 138/332 (41%), Positives = 200/332 (60%), Gaps = 17/332 (5%)

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
             +   +   PL V G+    TGT VTF    DIF    +N +T++ RL+E++FLN  + 
Sbjct: 1   QKYTRSVP-GPL-VKGAPTRATGTTVTFWADPDIFETTTYNVETVRRRLQEMAFLNKGLT 58

Query: 208 ISLIDKRSP---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           I L D+R+                + +E T  Y  G+E FV++L++ K P+ +  +   G
Sbjct: 59  IVLRDERNGDNGEAEEPDAEGYVAKIKEYTFHYPNGLEDFVAHLNKTKDPIHKKLVSFSG 118

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
                ++++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y       K+
Sbjct: 119 EAPGHALEVAMQWNSGYTESVYTFANTINTHEGGTHEEGFRAALTSTVNRYARDKKLLKE 178

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
              ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P
Sbjct: 179 KDPALSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNP 238

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EA+ IV K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP +SE+++VEG
Sbjct: 239 TEARTIVNKAVQSAQARMAARKARELVRRKSAGDIGGLPGKLADCRSTDPSRSEVYIVEG 298

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           DSAGGSAK GR    QAILP+RGKI+NVE+AR
Sbjct: 299 DSAGGSAKSGRDSMFQAILPIRGKIINVEKAR 330


>gi|309274197|gb|ADO63744.1| gyrase B [Pseudomonas cuatrocienegasensis]
          Length = 288

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 147/291 (50%), Positives = 210/291 (72%), Gaps = 3/291 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L L ++R G+I+E ++++G+   P+ + G + + TGT++ F PS
Sbjct: 1   GLHGVGVSVVNALSESLLLTVRRSGHIWEQTYVHGVPQEPMRIVGDS-DTTGTQIHFKPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
           ++ F+   F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV YL+ 
Sbjct: 60  AETFANIHFSWDILAKRLRELSFLNSGVGILLRDERSGKE--ELFKYEGGLRAFVEYLNV 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR
Sbjct: 118 NKTAVNQVFHFTMQREDGIGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 178 NLNTYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            +    S +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 EMGKHFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 288


>gi|312262428|gb|ADQ52723.1| gp60plus39 DNA topoisomerase subunit [Aeromonas phage PX29]
          Length = 614

 Score =  227 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 136/629 (21%), Positives = 239/629 (37%), Gaps = 70/629 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE----------------SGLHHMIYEVLDNAIDE 55
           +   ++L   +       MYIG    E                 GL  +  EV+DN +DE
Sbjct: 2   SQDFKVLSDKEHCLINTDMYIGAISTEVHDVLVDGKFVPHAYVPGLVKITDEVIDNCVDE 61

Query: 56  SLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG---ISAAEVIMTRLHAGGKF 109
           ++     +A+ I V +  D   TV DNGRG+P  + K      +       TR  AG  F
Sbjct: 62  AIRTSFEHANQIEVFI-KDNQVTVKDNGRGLPQQIVKTPEGDEVPLPLAAWTRARAGSNF 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
              + + + G +GVG ++ N  S           ++  +   N    + +  T   G   
Sbjct: 121 --SADRKTIGKNGVGSALTNFFSDSFVGETGNGKSVVTVRCTNN--ADEVSYTTKEGKFK 176

Query: 170 GTEVTFLPSSD---IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           GT VTF+P      +F + D     +Q RL  L+     +      K+            
Sbjct: 177 GTVVTFVPDFTRFGVFQLDDQFEQVIQSRLITLAVNFPQITFKYNGKKVESKFNKFAAQF 236

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
           G + +                           + L +  +D + +  L F N +  K GG
Sbjct: 237 GEVISHNDDN----------------------VSLFIANSDEFRQ--LSFVNGVHTKQGG 272

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKE 345
            H++G+  +L+ ++   +++    +  K        +E     L I+ +  P++  QTKE
Sbjct: 273 NHVTGIIDSLSDELIPMIKRQHKIEIPKAR-----IKECLLIGLFIRDLIAPKYDGQTKE 327

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           +L S   +        +     L    L+   ++  ++++++ +  A      T+ +   
Sbjct: 328 RLSSPWSQ---IRDHMNLDYKALARKMLKTPEVIDPIIESALAKKEAADKAAATKAQKKA 384

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
             A++   +         K+ LFL EGDSA G   + R+ E Q   PLRGK+LNV     
Sbjct: 385 KKANVAKHVKASGMGRV-KTMLFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWDLPD 443

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA-HIRTLLLTFFFRQ 524
            ++L ++EI  L+  L   +           Y  I IMTDAD DG   I  L + FF++ 
Sbjct: 444 HEVLKNKEISELLGILNVDLRSK----EAPAYSDIAIMTDADQDGKGSIAMLAIAFFYKY 499

Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584
            P     G +YI++ P Y  T GK   +    E       +   +        S  V   
Sbjct: 500 WPQWFEQGRIYIVRTPEYISTNGKKTDWSYSREEFRAKKFDSKWTHRHIKGLGSLTVEGD 559

Query: 585 N-DLRNFIDDALKIDKLIKDFYPNHDKTF 612
           + + +  I++ +    ++    P   +  
Sbjct: 560 DCEYKQCIENLVLEQVVVDSKTPELLEML 588


>gi|223674698|gb|ACN13045.1| DNA gyrase subunit B [Erwinia rhapontici]
 gi|223674702|gb|ACN13047.1| DNA gyrase subunit B [Erwinia rhapontici]
 gi|223674704|gb|ACN13048.1| DNA gyrase subunit B [Erwinia rhapontici]
          Length = 222

 Score =  227 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 115/223 (51%), Positives = 153/223 (68%), Gaps = 4/223 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG +++  +++G+   PL V+G  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIRREGKVHQQIYVHGVPQAPLSVSGET 60

Query: 166 GNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
            + TGT V F PS   F+   +F Y+ L  RLRELSFLNS V I L DKR  +       
Sbjct: 61  -DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELSFLNSGVSIKLEDKRDGKS--DHYH 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GGI+AFV YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+D
Sbjct: 118 YEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 177

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GGTHL G R+A+TR + +Y++K   SKK K S  GDD REG T
Sbjct: 178 GGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 220


>gi|209408284|emb|CAP19827.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 288

 Score =  227 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 147/291 (50%), Positives = 206/291 (70%), Gaps = 3/291 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++
Sbjct: 1   HGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKPSAE 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K
Sbjct: 60  TFQNIHFSWDILAKRLRELSFLNSGVGIFLRDERTAKE--ELFKYEGGLSAFVAYLNTNK 117

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR +
Sbjct: 118 TAVNQVFHFNIQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNL 177

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 NNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 237

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
               + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA LP
Sbjct: 238 GKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLP 288


>gi|89143208|emb|CAJ57501.1| DNA gyrase subunit B [Microbacterium resistens]
          Length = 363

 Score =  227 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 145/361 (40%), Positives = 210/361 (58%), Gaps = 20/361 (5%)

Query: 143 GNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           G ++  SF +G      L   G A  +TGT ++F P   IF    +F+YDTL+ R ++++
Sbjct: 4   GFVWRHSFADGGAPQQKLEK-GEATEETGTSISFWPDPAIFQETVEFDYDTLRTRFQQMA 62

Query: 201 FLNSSVQISLIDKRSPEPREIT-------------MFYKGGIEAFVSY--LDRHKKPLMQ 245
           FLN  ++I L+D+R     E                 Y+ G+  +V Y    R  + +  
Sbjct: 63  FLNKGLRIELLDEREGSTVEEEVDGTVVTRQRADVFLYERGLVDYVEYLNHVRKAEVVND 122

Query: 246 SPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             I  +       IS+++AM+W  GY ENV  + N I   +GGTH  G R+ALT  +  Y
Sbjct: 123 EIIAFESEDTTRKISLEVAMQWTTGYTENVFTYANTINTHEGGTHEEGFRAALTTLVNRY 182

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
              +   K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++  +  V + 
Sbjct: 183 ARANNILKEKDDNLTGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFTQKVVGEE 242

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  W + +P +AK +V K ++A+  R AAR+AR+  RRK V +  S+P KL DC+ +DP 
Sbjct: 243 LGDWFDRNPKQAKNVVTKAVEAATARLAARKARETARRKSVFESTSMPDKLKDCTSKDPS 302

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L+++E+  +I A GT
Sbjct: 303 ISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALANKEVQAMIQAFGT 362

Query: 484 G 484
           G
Sbjct: 363 G 363


>gi|321117348|dbj|BAJ72151.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 172/336 (51%), Positives = 233/336 (69%), Gaps = 4/336 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRE 198
           +REG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRE
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTN IPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNXIPQRDGGTHLAGFRAAMTRTLXAYMDKEGXSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FS QTK+KLVS E +S VE  +N+ L  +L EHP + KI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSXQTKDKLVSXEXKSAVEQQMNELLXEYLLEHPGDTKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AA RA + TR KG LD A LPGKLAD  E DP    ++LVEGD AGG 
Sbjct: 238 VGKIIDAARAREAAPRAPEXTRCKGALDPAGLPGKLADXQEPDPALFXIYLVEGDFAGGF 297

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
           AKQGR+R+NQAJ P +GKILNVE+ RFDKML+S E 
Sbjct: 298 AKQGRNRKNQAJPPXKGKILNVEKTRFDKMLASPEG 333


>gi|302422958|ref|XP_003009309.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
 gi|261352455|gb|EEY14883.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
          Length = 1688

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 134/717 (18%), Positives = 257/717 (35%), Gaps = 113/717 (15%)

Query: 2   SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES---------------------- 39
           +      +Y     Q L  L+ + KRP  YIG  +                         
Sbjct: 118 TKKTVEETY-----QKLTQLEHIVKRPDTYIGSVERTEMPMWVYNKETQLMEFRKVTTVP 172

Query: 40  GLHHMIYEVLDNAID------ESLEGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEG 92
           GL+ +  E+L NA D      ES E     I V ++ + G  ++ +NG+GIP ++HK+  
Sbjct: 173 GLYKIFDEILVNAADIKVRREESGEEPVTHIKVNIDREAGQISIENNGKGIPVEMHKQ-- 230

Query: 93  ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152
                                       HG                      IY  ++ +
Sbjct: 231 ----------------------------HG----------------------IY--TWTD 238

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
            +         S+ +     +TF P    FS++  + D    L  R+ +++     +++ 
Sbjct: 239 NMSKMGKAKITSSKSSDFVRITFKPDFKRFSMEGIDDDLEALLYRRVYDMAGTIKGIKVH 298

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
           L                      ++     ++             DN   D+    +DG 
Sbjct: 299 LNGTVVKPSAFKGYSEM--YAKAIAKERASEEGGEPKVTVEMDKNDNPRWDVGFTVSDGS 356

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            +++  F NNI    GGTH++ +   + + +T Y++K         ++     R      
Sbjct: 357 FQHI-SFVNNIATTSGGTHVNYVADQIVQYLTKYLDKKK----KGHALKPQHIRNHIFVF 411

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           ++ ++ +P F+SQTKE++ +      + SF +  + +      + A   ++ ++  +  +
Sbjct: 412 INCRIENPSFNSQTKEQMTTK-----ISSFGSKCVLSEAFLKKVAASDAIQNIMSFAEKK 466

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRE 446
                A+    R+  ++ A L         +   +  L L EGDSA   A  GR     +
Sbjct: 467 ADKMMAKSDGNRRSRINNAKLVDANL-AGTKRGHECTLILTEGDSAKSLAVAGRAILDPD 525

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
              + PLRGK+LNV  A  +++  +QEI  +   LG    Q+  D   LRY  ++IM D 
Sbjct: 526 RIGVFPLRGKMLNVRDASIEQITKNQEIQNIKQFLGLKHKQNYTDTKGLRYGHLMIMADQ 585

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           D DG+HI+ LL+ F   Q PSL+     +     P+  + +GK+ +  +  ++       
Sbjct: 586 DHDGSHIKGLLINFLQVQYPSLLQIPDFFREFITPIVKVWQGKNPKNPQKLQAFFTQPQY 645

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625
           +   E  +             L    ++         +   +  +    Q+  + +F+  
Sbjct: 646 EEWKEAHKNEISRWEYKYYKGLGTSSNE--DAQVYFTNLDDHLKEFDTMQSSEADLFDLA 703

Query: 626 SDQEINVSLASKLANRLNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEG 679
             ++   +    L N +            ++   +N   IL            VL+G
Sbjct: 704 FSKKKADARKEWLGNFVPGTYLDHSTKSITYDDFVNRELILFSMADNMRSIPSVLDG 760


>gi|223983624|ref|ZP_03633802.1| hypothetical protein HOLDEFILI_01083 [Holdemania filiformis DSM
           12042]
 gi|223964391|gb|EEF68725.1| hypothetical protein HOLDEFILI_01083 [Holdemania filiformis DSM
           12042]
          Length = 231

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 128/232 (55%), Positives = 179/232 (77%), Gaps = 1/232 (0%)

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T+++S+K PDP++  QTK KL ++EVR +V + + + L  +L E+P  AK+I++K
Sbjct: 1   MREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIVSNILGEQLERFLMENPNSAKLIIEK 60

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
              AS  R AA++AR+LTRRK  L+I++LPGKLADCS ++ +  E++LVEGDSAGGSAKQ
Sbjct: 61  AQLASKARLAAKKARELTRRKSALEISALPGKLADCSSKNAEICEIYLVEGDSAGGSAKQ 120

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501
           GR+ + QAILPLRGKILNVE+AR  ++  + EI ++ITA G G+G++  D+ KLRYHKI+
Sbjct: 121 GRNSKFQAILPLRGKILNVEKARLHRIFDNNEIRSMITAFGAGVGEEV-DVTKLRYHKIV 179

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYV 553
           IMTDADVDGAHIRTLLLTF +R +  ++  GF+YI +PPLY I +G+ ++Y 
Sbjct: 180 IMTDADVDGAHIRTLLLTFLYRYLRPVVEGGFVYIAQPPLYKIQKGQQVRYA 231


>gi|328497251|dbj|BAK18789.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 271

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 7/271 (2%)

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           +MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  
Sbjct: 1   LMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNA 60

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           YL + ++     +    +  I+   L   +      ++ I      +D   +   +    
Sbjct: 61  YLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPP 120

Query: 622 FNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQ 674
            + +  Q              + NR      + +  +  + +  ++ ++  R   G +  
Sbjct: 121 LDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFT 180

Query: 675 FVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI 734
            VL   +  S   +  R  S  + +       ++       IT        +    ++G 
Sbjct: 181 QVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGR 240

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
            +QR+KGLGEMNA QLWETT+NPDTR LL+V
Sbjct: 241 QVQRFKGLGEMNAEQLWETTVNPDTRRLLQV 271


>gi|221110139|ref|XP_002163496.1| PREDICTED: similar to DNA topoisomerase 2 [Hydra magnipapillata]
          Length = 1315

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 133/688 (19%), Positives = 247/688 (35%), Gaps = 104/688 (15%)

Query: 22  DAVKKRPSMYIGDT----------------------DGESGLHHMIYEVLDNAIDESLE- 58
             +   P  YIG T                      +  +G      E+L NA D ++  
Sbjct: 55  QHILSAPDTYIGTTTVDEVRMFIFDEDNNKIIEDVINYVAGFFKTFDEILVNARDHTVRD 114

Query: 59  GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS---- 113
                I +T++ D G  TV ++G GIP  +HK+  I   E+I   L     + +K     
Sbjct: 115 KTCKNIQITIDRDTGRITVWNDGNGIPVSIHKKYNIYVPEMIFGNLLTSQNYGKKGKTVG 174

Query: 114 ----YKVSGGLHGVGVSVVNALSSWLKL---------RIKREGNI----------YEMSF 150
               Y         G  + N  S   ++          +  +G I          Y  +F
Sbjct: 175 GKNGY---------GAKLCNIYSKEFEIHTIGVDKIKEV--DGKIVPDENAKKVEYRQTF 223

Query: 151 IN-----GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV----QDFNYDTLQHRLRELSF 201
            N     G  D    ++ S+     T+++++P  + + +     +  Y  L  R  +++ 
Sbjct: 224 KNNMYDVGKPDINKKISQSSKQF--TQISYIPDYEKYGMNGRLTNDMYSLLVKRCYDIAA 281

Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
              S     ++  + +              F  Y+  +     +   +I   + N   ++
Sbjct: 282 CTPSTVNISVNGCNIK-----------CRKFEDYIRLYYSDDPKEKPKITYEKVNDRWEI 330

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
            + +N    +  + F N I    GGTH+S + + +  ++T++++     +     +I   
Sbjct: 331 GIGFNKNVGDRYISFVNGISTFQGGTHVSHVVNNVVAKVTAFIK--KKKEHKDLKIIPAT 388

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSS--------EVRSVVESFVNDGLSAWLEEHPL 373
            ++  T  ++  + DP F+SQTKE + S          +   V+  ++D     L  + L
Sbjct: 389 IKQYLTFFINCVVEDPGFNSQTKEYMNSKVADWCTCGNMCKDVKCELSDEFIEKLCGNGL 448

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
             +++           D     +    +   L  A   G       +   K+ +F  EGD
Sbjct: 449 MTEVVNMSKFKEMRDLDKTDGKKVGKLKIPKLKDALWAGG------KKSAKTSIFFTEGD 502

Query: 434 SAGGSAKQGRSR---ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           SA      G S    E   + PLRGK+LNV  A   ++ S+ E   +   LG   G    
Sbjct: 503 SAQSFVIDGISVIGQERYGVFPLRGKLLNVRNATAKQIKSNTEFLNIKKILGLKQGVKYK 562

Query: 491 DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITRGKS 549
           D++KLRY  +II+TD D DG+HI+ L++       P L+  +GF+     P+    +   
Sbjct: 563 DVSKLRYGSVIIITDQDPDGSHIKGLIINMLEYFWPELLQIDGFIKAYNTPIVKAWKKTD 622

Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
            +    ++        +    E++      G   K           +  +  KDF  N  
Sbjct: 623 KKKASVKQFYSMSEFEKWRDVEMKGDIKGNGWEYKYYKGLGTSSNKESKESFKDFDNNLT 682

Query: 610 KTFIEQAVISGVFNCESDQEINVSLASK 637
               E    + V   +          +K
Sbjct: 683 TFLWEHEDDNSVKTDDDVSLDMDKSLNK 710


>gi|7242880|dbj|BAA92528.1| type II DNA topoisomerase [Porphyra tenera]
 gi|7768587|dbj|BAA95458.1| type II DNA topoisomerase [Porphyra yezoensis]
          Length = 402

 Score =  226 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 164/426 (38%), Gaps = 34/426 (7%)

Query: 71  DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNA 130
           +   +V +NG GIP  +H +EG+   E+I   L     ++    KV GG +G G  + N 
Sbjct: 1   NNRVSVWNNGAGIPVAMHAKEGVYVPELIFGHLLTSSNYDDGEKKVVGGRNGYGAKLANI 60

Query: 131 LSSWLKLRIKRE--GNIYEMSFINGILD--NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
            S+   +       G  Y+ +F   ++D   P +   +   DT T +TF P    F +  
Sbjct: 61  FSTRFVVETADASSGKTYKQTFKRNMMDRGTPAIRASAKPRDTWTRITFEPDLAKFGMDR 120

Query: 187 FNYD---TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
            N D    LQ R+ +++ +   + + L   +                  +   D    P 
Sbjct: 121 LNEDAVAVLQMRVVDMAGVVPGIAVYLNGAKLKINSFKQYV-------DLHLADAPDAPR 173

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +      +        ++ +  +DG       F N+I    GGTH++ +   L  +I  +
Sbjct: 174 IHDATSGR-------WEVVVSLSDGQLTQT-SFVNSIATTKGGTHVNHVADQLVSRIQEH 225

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           + K          V     +   +  +   + +P F SQTKE L S       +    D 
Sbjct: 226 IAKK----HKTLKVKPFQIKSQLSIYVKCLVENPAFDSQTKEMLTSRPASFGSKWVCPDR 281

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           ++  L +       +V+ VL  +  R     A+    ++  +              RD  
Sbjct: 282 MAKDLIKSG-----VVESVLSLAESRQVKELAKTDGGKRARVSGIPKLDDANLAGTRDSA 336

Query: 424 KSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           K  L L EGDSA   A  G S   R+   + PLRGK+LNV  A   +++ + EI  L   
Sbjct: 337 KCTLILTEGDSAKALAISGLSVVGRDYYGVFPLRGKLLNVREATHKQIMDNAEITNLKKI 396

Query: 481 LGTGIG 486
           +G   G
Sbjct: 397 IGLQHG 402


>gi|225550550|ref|ZP_03771499.1| topoisomerase IV subunit b [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225379704|gb|EEH02066.1| topoisomerase IV subunit b [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 406

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 134/345 (38%), Positives = 212/345 (61%), Gaps = 4/345 (1%)

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             ++ + + I +++A +++D  +E ++ F N++   +GG H +  ++ALT  + +Y  K 
Sbjct: 3   FFLKNTINKIDVEVAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSVVNNYARKH 62

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              K+  +++ GDD REG +SV+S+++P+    +  QTK KL + E    V+  + D  S
Sbjct: 63  DLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVKKTIEDNFS 122

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDPKK 424
            WLEE+  +A  +V + + A   + AA+RAR+ T++ K + +   + GKL     +DP  
Sbjct: 123 FWLEENKTQALDLVNRAIVARDAKLAAKRAREETKKVKKIKEERGMGGKLTPAQSKDPTL 182

Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR   +L ++EI ++ T LGTG
Sbjct: 183 NELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIASIFTCLGTG 242

Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544
           IG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M  LI NG +YI  PPLY +
Sbjct: 243 IGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYIALPPLYKL 301

Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
           T   + ++    + +E   + +             G ++ + L  
Sbjct: 302 TNKNTKKFFYAWDDVELGQLKKEQKNYEIQRYKGLGEMNADQLFE 346



 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750
           I +  I      +  L     K        + L  +    +K   +QRYKGLGEMNA QL
Sbjct: 286 IENGNIYIALPPLYKLTNKNTKKFFYAWDDVELGQLKKE-QKNYEIQRYKGLGEMNADQL 344

Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +ETT++P  R LLRV I D  QA+   + LMG++V  RR++I  N
Sbjct: 345 FETTMDPSKRLLLRVNINDILQAERQINTLMGNDVSIRRQWIDNN 389


>gi|328497277|dbj|BAK18802.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 270

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 128/270 (47%), Gaps = 7/270 (2%)

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  Y
Sbjct: 1   MTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAY 60

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           L + ++     +    +  I+   L   +      ++ I      +D   +   +     
Sbjct: 61  LASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPL 120

Query: 623 NCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQF 675
           + +  Q              + NR      + +  +  + +  ++ ++  R   G +   
Sbjct: 121 DVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQ 180

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735
           VL   +  S   +  R  S  + +       ++       IT        +    ++G  
Sbjct: 181 VLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQ 240

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           +QR+KGLGEMNA QLWETT+NPDTR LL+V
Sbjct: 241 VQRFKGLGEMNAEQLWETTVNPDTRRLLQV 270


>gi|332272095|gb|AEE38731.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|332272097|gb|AEE38732.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|332272099|gb|AEE38733.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|332272101|gb|AEE38734.1| DNA gyrase subunit beta [Aeromonas molluscorum]
          Length = 308

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 180/311 (57%), Positives = 233/311 (74%), Gaps = 4/311 (1%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + N TGTEV F PS+ IF+   ++YD L  RLRELSFLNS V I L D+
Sbjct: 1   EPQAPLKQIGDS-NGTGTEVRFWPSATIFTDTLYHYDILAKRLRELSFLNSGVSIRLEDE 59

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
           R  + RE+   Y+GGI+AFV YL+++K P+ Q        +D I +++AM+WND Y E V
Sbjct: 60  R--DGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSI 332
            CFTNNIPQ+DGGTHL G R+ALTR + +Y+++   SKK K S   GDD REG  +V+S+
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDREDYSKKAKMSAASGDDVREGLIAVISV 177

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AA
Sbjct: 178 KVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAA 237

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 238 RKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILP 297

Query: 453 LRGKILNVERA 463
           L+GKILNVERA
Sbjct: 298 LKGKILNVERA 308


>gi|332272103|gb|AEE38735.1| DNA gyrase subunit beta [Aeromonas molluscorum]
          Length = 308

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 178/311 (57%), Positives = 231/311 (74%), Gaps = 4/311 (1%)

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
               PL   G + N TGTEV F PS+ IF+   ++YD L  RLRELSFLNS V I L  +
Sbjct: 1   EPQAPLKQIGDS-NGTGTEVRFWPSATIFTDTLYHYDILAKRLRELSFLNSGVSIRL--E 57

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
              + RE+   Y+GGI+AFV YL+++K P+ Q        +D I +++AM+WND Y E V
Sbjct: 58  VERDGREVHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQDGIGVEVAMQWNDAYQEGV 117

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSI 332
            CFTNNIPQ+DGGTHL G R+ALTR + +Y+++   SKK K S   GDD REG  +V+S+
Sbjct: 118 YCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDREDYSKKAKMSAASGDDVREGLIAVISV 177

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+PDP+FSSQTK+KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AA
Sbjct: 178 KVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAA 237

Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452
           R+AR++TRRKG LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILP
Sbjct: 238 RKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILP 297

Query: 453 LRGKILNVERA 463
           L+GKILNVERA
Sbjct: 298 LKGKILNVERA 308


>gi|54125547|gb|AAV30540.1| gyrase B [Citrobacter freundii]
          Length = 287

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 153/290 (52%), Positives = 212/290 (73%), Gaps = 4/290 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG +++ ++++G+   PL VTG     TGT+V F PS + F+ 
Sbjct: 1   VSVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGETE-ATGTQVRFWPSHETFTN 59

Query: 185 Q-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+
Sbjct: 60  VVEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPI 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y
Sbjct: 118 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ 
Sbjct: 178 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPGK
Sbjct: 238 LSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGK 287


>gi|156536676|gb|ABU80442.1| gyrase B [Photorhabdus luminescens subsp. laumondii]
          Length = 318

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 164/315 (52%), Positives = 223/315 (70%), Gaps = 4/315 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRE 198
           +R+G ++E ++  G+  + L V G     TGT V F PS D F    +F +D L  RLRE
Sbjct: 7   RRDGKVHEQTYHLGVPQSTLKVVGETE-QTGTRVRFWPSMDTFRDNTEFQHDILAKRLRE 65

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I LIDKR+    E    Y+GGI+AFV +L+++K P+           D + 
Sbjct: 66  LSFLNSGVSIRLIDKRT--NIEDHFHYEGGIKAFVEFLNKNKSPIHPKVFYFSTKEDGLG 123

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++ N G+ +N+ CFTNNIP    GTHL G R+A+TR + SY++K   +KK K S  
Sbjct: 124 VEVALQVNPGFQKNICCFTNNIPPTARGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSAT 183

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +
Sbjct: 184 GDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTV 243

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438
           V K++DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGS
Sbjct: 244 VSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGS 303

Query: 439 AKQGRSRENQAILPL 453
           AKQG +R+NQAILPL
Sbjct: 304 AKQGSNRKNQAILPL 318


>gi|281331996|emb|CAZ39972.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 271

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 137/273 (50%), Positives = 180/273 (65%), Gaps = 3/273 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSV NALS  L + + + G+ Y+  F NG     L     A    GT V
Sbjct: 1   YKVSGGLHGVGVSVDNALSQKLLVDVFQNGSHYQQEFSNGAAVTALAKL-EATTKRGTTV 59

Query: 174 TFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS+  F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +F
Sbjct: 60  RFWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSF 118

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G 
Sbjct: 119 VEHLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGF 178

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+V
Sbjct: 179 RGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDV 238

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385
           R  VE+     L  +L+E+P EAK I  K++DA
Sbjct: 239 RPAVENAFGARLEEFLQENPNEAKAIAGKIVDA 271


>gi|310781227|gb|ADP24089.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 308

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 144/311 (46%), Positives = 206/311 (66%), Gaps = 3/311 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L++ +K+   IY   +  G+    L V G       T +TF P  +IF    F+
Sbjct: 1   NALSEKLEVIVKQHRKIYRQIYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEETVFD 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLREL+FLN  + I LID+R  +       Y+GGI +FV YL+R+K+ L   PI
Sbjct: 60  YDVLAQRLRELAFLNKGINIKLIDERDGKE--EVFNYEGGIISFVKYLNRNKEVLHDEPI 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            ++       +++ M++N+ Y+EN+  F NNI  ++GGTHL G ++ALT+ I  Y  K  
Sbjct: 118 YMEAKNTEYEVEVCMQYNNSYNENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K +++++ G+D REG T+++S+K+ +P+F  QTK KL +SE+RS+VE+ V + L+A+L
Sbjct: 178 IIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
           EE+P  AKIIV+K   A+  R+AAR+AR+LTRRK  L+  +LPGKLADCSE+DP K ELF
Sbjct: 238 EENPSVAKIIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELF 297

Query: 429 LVEGDSAGGSA 439
           LVEGDSAGGSA
Sbjct: 298 LVEGDSAGGSA 308


>gi|308153094|dbj|BAJ22136.1| DNA gyrase subunit B [Streptomyces racemochromogenes]
          Length = 324

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 123/323 (38%), Positives = 190/323 (58%), Gaps = 21/323 (6%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
             Y VSGGLHGVGVSVVNALS+ + + +K +G+ +   +  G+   PL       ++TGT
Sbjct: 1   GGYAVSGGLHGVGVSVVNALSTKVAVEVKTDGHRWTQDYKLGVPTAPLAKNEET-DETGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------- 215
            VTF    DIF   +++++TL  R +E++FLN  + ++L D+R                 
Sbjct: 60  SVTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADDPDADAA 119

Query: 216 -PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHE 271
            P  R +  +Y+GGI  FV Y   R  + +  + I ++       +S+++AM+WN  Y E
Sbjct: 120 EPTARTVKYYYEGGIVDFVKYLNSRKGELIHPTVIDVEAEDKERMLSVEIAMQWNSQYSE 179

Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331
            V  F N I   +GGTH  G R+ALT  +  Y       ++   ++ G+D REG T+++S
Sbjct: 180 GVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREGLTAIIS 239

Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +K+ +P+F  QTK KL ++E ++ V+  V++ LS W + +P+EA  IV+K + A+  R A
Sbjct: 240 VKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLSDWFDRNPVEAADIVRKAIQAATARVA 299

Query: 392 ARRARDLTRRKGVLDIASLPGKL 414
           AR+ARDLTRRKG+L+ ASLPGKL
Sbjct: 300 ARKARDLTRRKGLLESASLPGKL 322


>gi|328497287|dbj|BAK18807.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 271

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/271 (28%), Positives = 126/271 (46%), Gaps = 7/271 (2%)

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL + ++ 
Sbjct: 1   GSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVE 60

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
               +    +  I+   L   +      ++ I      +D   +   +     + +  Q 
Sbjct: 61  GAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLDVDKLQA 120

Query: 630 INV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFVLEGSSI 682
                        + NR      + +  +  + +  ++ ++  R   G +   VL   + 
Sbjct: 121 EGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQVLPMGAF 180

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742
            S   +  R  S  + +       ++       IT        +    ++G  +QR+KGL
Sbjct: 181 ESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQVQRFKGL 240

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           GEMNA QLWETT+NPDTR LL+V+I DA  A
Sbjct: 241 GEMNAEQLWETTVNPDTRRLLQVRIEDAVAA 271


>gi|302122550|gb|ADK92943.1| topoisomerase IV subunit B [Geobacillus subterraneus]
          Length = 266

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 113/268 (42%), Positives = 161/268 (60%), Gaps = 7/268 (2%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN 167
           F Q  YK SGGLHGVG SVVNALS WL + I R+G IY   F N G     L   G   N
Sbjct: 1   FGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFENGGKXVTTLEKIG-TTN 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT + F P   IFS   F+Y+TL  RLRE +FL   ++I L+D+R+         Y+ 
Sbjct: 60  KTGTIIQFKPDPAIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MCEVFHYEN 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GIEAFV+YL+  K  L        G ++ I ++ A +++DGY ENVL F NN+  KDGGT
Sbjct: 118 GIEAFVAYLNEEKDVLHPVA-YFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGT 176

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKE 345
           H +G ++A+TR    Y       K+  +++ G D REG ++++S+++P+   +F  QTK 
Sbjct: 177 HEAGAKTAMTRVFNEYARXVGLLKEKDKNLEGADIREGLSAIVSVRIPEHLLQFEGQTKG 236

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KL +SE RS V++ V++ L+ +L+E+P 
Sbjct: 237 KLGTSEARSAVDAVVSEQLTYFLQENPD 264


>gi|219536314|gb|ACL18062.1| DNA gyrase subunit B [Pseudomonas sp. TLC13:3-3.5cm-3G]
          Length = 264

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 133/267 (49%), Positives = 185/267 (69%), Gaps = 3/267 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TGT++ F PS
Sbjct: 1   GLHGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTGTQIHFKPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
              F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ 
Sbjct: 60  DLTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNT 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR
Sbjct: 118 NKTPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 178 NLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDA 385
            +    S +L E+P EAK++V K++DA
Sbjct: 238 EMGKYFSDFLLENPNEAKLVVGKMIDA 264


>gi|168218730|emb|CAJ29741.2| DNA gyrase subunit B [Pseudomonas kilonensis]
          Length = 287

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 147/290 (50%), Positives = 206/290 (71%), Gaps = 3/290 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TGT++ F  SS
Sbjct: 1   LHGVGVSVVNALSEQLVLTVRRSGKIWEQTYIHGVPQAPMAIVGDSE-STGTQIHFKASS 59

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           + F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +
Sbjct: 60  ETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTN 117

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR 
Sbjct: 118 KTPVNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRN 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 LNTYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +    S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 MGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAG 287


>gi|189164046|gb|ACD77133.1| FusA [Geobacter sp. M18]
          Length = 245

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 151/245 (61%), Positives = 196/245 (80%)

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +++LTR + +Y   +   K  K ++ G+D REG T+V+S+K+  P+F  QTK KL +SEV
Sbjct: 1   KASLTRTMNNYATANNLLKNVKVAISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEV 60

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +  VE+ +N+ L+ +LEE+P  A+ I++K +DA+  R+AAR+AR+LTRRKG L++ +LPG
Sbjct: 61  KGYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPG 120

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP   ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML+SQ
Sbjct: 121 KLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQ 180

Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
           EI TLI+ALGT IG++ FDI KLRYH+IIIMTDADVDG+HI TLLLTFFFRQM  +I  G
Sbjct: 181 EIRTLISALGTSIGKEDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMMEMIERG 240

Query: 533 FLYII 537
           +LYI 
Sbjct: 241 YLYIA 245


>gi|224770941|dbj|BAH28412.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  224 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 164/246 (66%), Gaps = 1/246 (0%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS
Sbjct: 1   SVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
              ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF   +++++ L
Sbjct: 61  ELCEVIVTRDGYVWKQSYKRGAVLTDLEKIGEAE-GSGTKVHFKPDHEIFEETEYDFEIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L   PI ++G
Sbjct: 120 SQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHDEPIYVEG 179

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y  +    K+
Sbjct: 180 LKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKE 239

Query: 313 DKRSVI 318
             +++ 
Sbjct: 240 SDKNLS 245


>gi|89143188|emb|CAJ57491.1| DNA gyrase subunit B [Microbacterium keratanolyticum]
          Length = 359

 Score =  224 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 151/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)

Query: 143 GNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           G ++  +F NG      L V G+A  +TGT ++F P ++IF+   +F+YDTL+ R ++++
Sbjct: 1   GFVWNHAFANGGHPQQGL-VKGAATEETGTTISFWPDAEIFTDTVEFDYDTLRTRFQQMA 59

Query: 201 FLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFVSY--LDRHKKPLMQ 245
           FLN  ++I L D+R               E R    FY+ G+  +V Y    RH + +  
Sbjct: 60  FLNKGLRIELHDEREGTAQEIEKDGEVIVELRNDVFFYERGLVDYVEYLNRIRHAEVVND 119

Query: 246 SPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             I          IS+++AM+W  GY ENV  + N I   +GGTH  G R+ALT  +  Y
Sbjct: 120 EIIAFDSEDTVRKISLEVAMQWTTGYTENVFTYANTINTHEGGTHEEGFRAALTTLVNKY 179

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
              +   K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+  V D 
Sbjct: 180 ARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVVGDQ 239

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  W + +P +AK +V+K +DA+  R AAR+AR+  RRK V + A++P KL DC+ +DP 
Sbjct: 240 LGDWFDRNPNQAKNVVRKAIDAATARMAARKARETARRKSVFESAAMPDKLKDCTSKDPS 299

Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
            SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L ++E+  +I A GT
Sbjct: 300 ISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNREVQAMIQAFGT 359


>gi|52546300|dbj|BAD51533.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546302|dbj|BAD51534.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546304|dbj|BAD51535.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546306|dbj|BAD51536.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546308|dbj|BAD51537.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546310|dbj|BAD51538.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546312|dbj|BAD51539.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546314|dbj|BAD51540.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546316|dbj|BAD51541.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546318|dbj|BAD51542.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546320|dbj|BAD51543.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546322|dbj|BAD51544.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546324|dbj|BAD51545.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546326|dbj|BAD51546.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546328|dbj|BAD51547.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546330|dbj|BAD51548.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546332|dbj|BAD51549.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546334|dbj|BAD51550.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546336|dbj|BAD51551.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546338|dbj|BAD51552.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546340|dbj|BAD51553.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546342|dbj|BAD51554.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546344|dbj|BAD51555.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546346|dbj|BAD51556.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546348|dbj|BAD51557.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546350|dbj|BAD51558.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546352|dbj|BAD51559.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546354|dbj|BAD51560.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546356|dbj|BAD51561.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546358|dbj|BAD51562.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546360|dbj|BAD51563.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546362|dbj|BAD51564.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546364|dbj|BAD51565.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546366|dbj|BAD51566.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546368|dbj|BAD51567.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546370|dbj|BAD51568.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546372|dbj|BAD51569.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546374|dbj|BAD51570.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546376|dbj|BAD51571.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546378|dbj|BAD51572.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546380|dbj|BAD51573.1| DNA gyrase subunit B [Burkholderia glumae]
          Length = 267

 Score =  224 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 128/268 (47%), Positives = 174/268 (64%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|146318412|ref|YP_001198124.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 05ZYH33]
 gi|145689218|gb|ABP89724.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 05ZYH33]
          Length = 387

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 145/358 (40%), Positives = 214/358 (59%), Gaps = 11/358 (3%)

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M++NDGY +N+L F NN+  KDGGTH +GL+ A+T+ +  Y  K+   K+  +++ G D 
Sbjct: 1   MQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAITKAMNDYARKTNLLKEKDKNLEGSDY 60

Query: 323 REGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           REG ++VLSI +P+   +F  QTK+KL S   R VV+  V+D L+ +L E+   A  +V+
Sbjct: 61  REGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVSDKLTFFLLENGELASNLVR 120

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLADCSERDPKKSELFLVEGDSAGGS 438
           K + A   R+AAR+ARD +R             GKL     ++P K+EL+LVEGDSAGGS
Sbjct: 121 KAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGS 180

Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AKQGR R+ QAILPLRGK++N  +A+   +L ++EI T+I  +G G+G D F I  + Y 
Sbjct: 181 AKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSD-FTIEDVNYD 239

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG----KSLQYVK 554
           KIIIMTDAD DGAHI+TLLLTFF+R M  L+  G +YI  PPLY +++G    + + Y  
Sbjct: 240 KIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKAEKIAYAW 299

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK--IDKLIKDFYPNHDK 610
            +  LED   +      ++ +     + +       ++   +  I   I+D      +
Sbjct: 300 SDGELEDLRKDFGKGFILQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERR 357



 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/95 (46%), Positives = 61/95 (64%)

Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760
              +       +KI        L+ +     KG  +QRYKGLGEMNA QLWETT+NP+TR
Sbjct: 282 LYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWETTMNPETR 341

Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795
           +L+RV I D ++A+   S LMGD+VEPRR++I++N
Sbjct: 342 TLIRVTIEDLARAERRVSVLMGDKVEPRRKWIEDN 376


>gi|52546382|dbj|BAD51574.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546384|dbj|BAD51575.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546390|dbj|BAD51578.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546392|dbj|BAD51579.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546394|dbj|BAD51580.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546396|dbj|BAD51581.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546398|dbj|BAD51582.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546400|dbj|BAD51583.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546406|dbj|BAD51586.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546410|dbj|BAD51588.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546412|dbj|BAD51589.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546414|dbj|BAD51590.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546416|dbj|BAD51591.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546422|dbj|BAD51594.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546426|dbj|BAD51596.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546428|dbj|BAD51597.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040308|dbj|BAE16151.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|78042236|dbj|BAE46937.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|78042238|dbj|BAE46938.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|78042240|dbj|BAE46939.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 130/268 (48%), Positives = 175/268 (65%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L +KR G  + M F  G+              +P+ VTG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKTVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|158699674|gb|ABW76855.1| DNA gyrase subunit B [Alcanivorax dieselolei]
 gi|158699676|gb|ABW76856.1| DNA gyrase subunit B [Alcanivorax dieselolei]
          Length = 299

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 159/302 (52%), Positives = 218/302 (72%), Gaps = 3/302 (0%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  LKL I+R G ++E  + +G+ + PL V G     +GT + F PSS  F+   F+
Sbjct: 1   NALSETLKLTIRRHGKVHEQVYHDGVPEKPLEVVG-TTESSGTAIRFRPSSGTFNNIQFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V+I L+D+RS +       Y+GG+ AFV+YL+++K  L Q   
Sbjct: 60  YDILAKRLRELSFLNSGVRIHLVDERSGDE--DVFEYEGGLSAFVTYLNQNKNSLNQVFH 117

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                 D IS+++AM+WND Y EN+ C+TNNIPQ+DGGTHL+G R+ALTR + +Y+EK  
Sbjct: 118 FQVDREDGISVEVAMQWNDSYQENIFCYTNNIPQRDGGTHLAGFRAALTRTLNNYMEKEG 177

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             K++K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VE  + +    +L
Sbjct: 178 FLKREKANPSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMTERFQDFL 237

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428
            EHP+E+K IV+K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+
Sbjct: 238 LEHPVESKNIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELY 297

Query: 429 LV 430
           +V
Sbjct: 298 IV 299


>gi|52546386|dbj|BAD51576.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546418|dbj|BAD51592.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546420|dbj|BAD51593.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040310|dbj|BAE16152.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|78042244|dbj|BAE46941.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 130/268 (48%), Positives = 175/268 (65%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L +KR G  + M F  G+              +P+ VTG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLEKRDGVEVSPMAVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKTVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|328497271|dbj|BAK18799.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 270

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 128/270 (47%), Gaps = 7/270 (2%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL
Sbjct: 1   TDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYL 60

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            + ++     +    +  I+   L   +      ++ I      +D   +   +     +
Sbjct: 61  ASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLD 120

Query: 624 CESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFV 676
            +  Q              + NR      + +  +  + +  ++ ++  R   G +   V
Sbjct: 121 VDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQV 180

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISM 736
           L   +  S   +  R  S  + +       ++       IT        +    ++G  +
Sbjct: 181 LPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQV 240

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
           QR+KGLGEMNA QLWETT+NPDTR LL+V+
Sbjct: 241 QRFKGLGEMNAEQLWETTVNPDTRRLLQVR 270


>gi|281332002|emb|CAZ39975.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 255

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 128/257 (49%), Positives = 172/257 (66%), Gaps = 3/257 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPST-KRGTTLRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV 
Sbjct: 60  WPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R 
Sbjct: 119 HLAQLKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 ALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 238

Query: 355 VVESFVNDGLSAWLEEH 371
            VES     L  +L+E+
Sbjct: 239 AVESAFGQRLEEFLQEN 255


>gi|52546434|dbj|BAD51600.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546436|dbj|BAD51601.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546438|dbj|BAD51602.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546442|dbj|BAD51604.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546444|dbj|BAD51605.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546446|dbj|BAD51606.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546448|dbj|BAD51607.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546450|dbj|BAD51608.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546452|dbj|BAD51609.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546454|dbj|BAD51610.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546456|dbj|BAD51611.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546458|dbj|BAD51612.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546462|dbj|BAD51614.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546464|dbj|BAD51615.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546468|dbj|BAD51617.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546478|dbj|BAD51622.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 127/268 (47%), Positives = 174/268 (64%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRELETRNGVEVSPMTVVGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G ++ + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKTVLHPTIFHIIGEKEGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|328926672|gb|AEB66894.1| DNA gyrase subunit B [Enterobacteriaceae bacterium 8N4]
          Length = 283

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 144/284 (50%), Positives = 205/284 (72%), Gaps = 4/284 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS+ L+L I+R+  +++ ++++G+    L V G   + TGT+V F PS + F
Sbjct: 1   VGVSVVNALSAKLELTIRRDNKVHQQTYVHGVPQASLTVVGET-DSTGTQVRFWPSHETF 59

Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           +    F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV YL+++K 
Sbjct: 60  TNVVVFEYEILAKRLRELSFLNSGVSIRLEDKRDDKA--DHYHYEGGIKAFVEYLNKNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + 
Sbjct: 118 PIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N
Sbjct: 178 AYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMN 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           + L+ +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG L
Sbjct: 238 ELLAEYLLENPGDAKIVVGKIIDAARAREAARRAREMTRRKGAL 281


>gi|71040318|dbj|BAE16156.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 130/268 (48%), Positives = 175/268 (65%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L +KR G  + M F  G+              +P+ VTG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEMAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|52546402|dbj|BAD51584.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546404|dbj|BAD51585.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546408|dbj|BAD51587.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546424|dbj|BAD51595.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546430|dbj|BAD51598.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546432|dbj|BAD51599.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040304|dbj|BAE16149.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040306|dbj|BAE16150.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040320|dbj|BAE16157.1| DNA gyrase subunit B [Burkholderia gladioli pv. cocovenerans]
 gi|71040322|dbj|BAE16158.1| DNA gyrase subunit B [Burkholderia gladioli pv. agaricicola]
 gi|78042242|dbj|BAE46940.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|78042246|dbj|BAE46942.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 130/268 (48%), Positives = 175/268 (65%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L +KR G  + M F  G+              +P+ VTG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|190148820|gb|ACE63385.1| DNA gyrase B subunit [Streptomonospora salina]
          Length = 349

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 145/350 (41%), Positives = 214/350 (61%), Gaps = 5/350 (1%)

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
            S+       PL   G    DTGT+ TF     IF    ++++TL  R++E++FLN  + 
Sbjct: 1   QSYDTARPVAPLAR-GEETADTGTQTTFWADETIFESTTYSFETLARRMQEMAFLNRGLS 59

Query: 208 ISLIDKRSP----EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           I++ D+R       P   T  Y+ GI  FV++++  K+P   + I  +   + IS +++M
Sbjct: 60  ITIRDERPEFVGDTPLVHTYHYENGISDFVAHINTTKEPAHATIIGFEEEGEGISTEISM 119

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           +WN  +  +V  F N I   +GGTH  G R+ALT  +  Y  +    ++   ++ GDD R
Sbjct: 120 QWNQSFTSSVHTFANTINTAEGGTHEEGFRTALTSVVNRYAREQKLLREKDDNLTGDDIR 179

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383
           EG T+++S+K+ DP+F  QTK KL ++E +S V+   ++ L  W E +P EAK +V K  
Sbjct: 180 EGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQRVTHEHLRDWFERNPGEAKDVVTKAS 239

Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
            A+  R AAR+ARDLTRRK +L+  SLPGKL+DC   +P+KSE+++VEGDSAGGSAK GR
Sbjct: 240 QAARARIAARQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGR 299

Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
               QAILP+RGKILNVE++R D++L + E+  +ITALGTGI  D     
Sbjct: 300 DPHYQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHDDFDASK 349


>gi|167995577|gb|ACA13624.1| GyrB [Thalassospira sp. MCCC 1A01288]
 gi|167995581|gb|ACA13626.1| GyrB [Thalassospira sp. MCCC 1A01318]
 gi|167995585|gb|ACA13628.1| GyrB [Thalassospira sp. MCCC 1A01423]
 gi|167995589|gb|ACA13630.1| GyrB [Thalassospira sp. MCCC 1A01449]
          Length = 306

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 181/306 (59%), Positives = 231/306 (75%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND------TGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL V G A         TGTEVTF P ++IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAVKPLEVVGDAPIMEDGKPLTGTEVTFYPDAEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+  TL+HRLREL+FLNS V +SL D+RS EP EI + Y+GGI AFV YLDR K   
Sbjct: 61  NTEFSLSTLEHRLRELAFLNSGVFLSLRDERSSEPTEIKLHYEGGIRAFVEYLDRSKTRQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++ PI I+G +D I++++A++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI  Y
Sbjct: 121 IEEPISIEGEKDGITVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINHY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +KK+K S+ GDD REG T V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ +ND 
Sbjct: 181 AQESGIAKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRPVVENILNDK 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LSQWLEEHPQDARKIVGKVVEAATAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|52546476|dbj|BAD51621.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 126/268 (47%), Positives = 174/268 (64%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            +  GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  EH-RGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G+HL+GLR+A+TR I  Y+  +  ++K K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GSHLTGLRAAMTRVINKYIVDNEIARKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEDVVAKALEEFLLETPN 265


>gi|224770891|dbj|BAH28387.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770935|dbj|BAH28409.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770939|dbj|BAH28411.1| DNA gyrase subunit B [Clostridium perfringens NCTC 8239]
 gi|224770945|dbj|BAH28414.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770953|dbj|BAH28418.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770955|dbj|BAH28419.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770957|dbj|BAH28420.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770959|dbj|BAH28421.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770975|dbj|BAH28429.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770977|dbj|BAH28430.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770979|dbj|BAH28431.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 164/246 (66%), Gaps = 1/246 (0%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS
Sbjct: 1   SITVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
              ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF   +++++ L
Sbjct: 61  ELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFEETEYDFEIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L   PI ++G
Sbjct: 120 SQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHDEPIYVEG 179

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y  +    K+
Sbjct: 180 LKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKE 239

Query: 313 DKRSVI 318
             +++ 
Sbjct: 240 SDKNLS 245


>gi|224770925|dbj|BAH28404.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 108/246 (43%), Positives = 165/246 (67%), Gaps = 1/246 (0%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS
Sbjct: 1   SITVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
              ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF   +++++ L
Sbjct: 61  ELCEVIVTRDGYVWKQSYKRGAVLTGLEKVGEAE-GSGTKVHFKPDHEIFEETEYDFEIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L + PI ++G
Sbjct: 120 SQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHEEPIYVEG 179

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D IS++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y  +    K+
Sbjct: 180 LKDGISVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKE 239

Query: 313 DKRSVI 318
             +++ 
Sbjct: 240 SDKNLS 245


>gi|224770873|dbj|BAH28378.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770875|dbj|BAH28379.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770877|dbj|BAH28380.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770879|dbj|BAH28381.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770881|dbj|BAH28382.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770883|dbj|BAH28383.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770885|dbj|BAH28384.1| DNA gyrase subunit B [Clostridium perfringens CPE str. F4969]
 gi|224770889|dbj|BAH28386.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770895|dbj|BAH28389.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770897|dbj|BAH28390.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770899|dbj|BAH28391.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770901|dbj|BAH28392.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770903|dbj|BAH28393.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770905|dbj|BAH28394.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770907|dbj|BAH28395.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770909|dbj|BAH28396.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770913|dbj|BAH28398.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770915|dbj|BAH28399.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770921|dbj|BAH28402.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770929|dbj|BAH28406.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770933|dbj|BAH28408.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770937|dbj|BAH28410.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770943|dbj|BAH28413.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770947|dbj|BAH28415.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770949|dbj|BAH28416.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770951|dbj|BAH28417.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770969|dbj|BAH28426.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770971|dbj|BAH28427.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  223 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 164/246 (66%), Gaps = 1/246 (0%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS
Sbjct: 1   SVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
              ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF   +++++ L
Sbjct: 61  ELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFEETEYDFEIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L   PI ++G
Sbjct: 120 SQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHDEPIYVEG 179

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y  +    K+
Sbjct: 180 LKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKE 239

Query: 313 DKRSVI 318
             +++ 
Sbjct: 240 SDKNLS 245


>gi|7242882|dbj|BAA92529.1| type II DNA topoisomerase [Bangia atropurpurea]
          Length = 402

 Score =  223 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 95/426 (22%), Positives = 165/426 (38%), Gaps = 34/426 (7%)

Query: 71  DGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNA 130
           +   +V +NG GIP  +H +EG+   E+I   L     ++    KV GG +G G  + N 
Sbjct: 1   NNRVSVWNNGAGIPVAMHAKEGVYVPELIFGHLLTSSNYDDGEKKVVGGRNGYGAKLANI 60

Query: 131 LSSWLKLRIKRE--GNIYEMSFINGILD--NPLVVTGSAGNDTGTEVTFLPSSDIFSV-- 184
            S+   +       G  Y+ +F   ++D   P +   +   D  T +TF P    F +  
Sbjct: 61  FSTRFVVETADAASGKTYKQTFTRNMMDRGAPSIRASAKPKDAWTRITFEPDLPKFHMAA 120

Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
                   LQ R+ +++ +   + + L   R                  +   D    P 
Sbjct: 121 LDADAVAVLQMRVVDMAGVVPGIGVYLNGARLKVRNFSQYV-------ALHLADAPDAPR 173

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +      +        ++ +  +DG  +    F N+I    GGTH++ +   L  +I  +
Sbjct: 174 IHDDASGR-------WEVVVSLSDGQMQQT-SFVNSISTTKGGTHVTHVADQLVSRIQEH 225

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           + K    +     V     +   +  +   + +P F SQTKE L S       +    D 
Sbjct: 226 IAK----RHKTLKVKPFQIKSQLSIFVKCLVENPAFDSQTKEMLTSRPSTFGSKWVCPDK 281

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           ++  L +       +V+ VL  +  R +   A+    ++  +   +          RD  
Sbjct: 282 MARDLMKSG-----VVESVLSLAESRQSKELAKTDGGKRARVTGIAKLDDANQAGTRDSA 336

Query: 424 KSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           K  L L EGDSA   A  G S   R+   + PLRGK+LNV  A   +++ + EI  L   
Sbjct: 337 KCTLILTEGDSAKALAISGLSVLGRDYYGVFPLRGKLLNVREATHKQIMDNAEITNLKKI 396

Query: 481 LGTGIG 486
           +G   G
Sbjct: 397 IGLQHG 402


>gi|224770917|dbj|BAH28400.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  223 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 165/246 (67%), Gaps = 1/246 (0%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS
Sbjct: 1   SVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
              ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF   +++++ L
Sbjct: 61  ELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFEETEYDFEIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L + PI ++G
Sbjct: 120 SQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHEEPIYVEG 179

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y  +    K+
Sbjct: 180 LKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKE 239

Query: 313 DKRSVI 318
             +++ 
Sbjct: 240 SDKNLS 245


>gi|328497259|dbj|BAK18793.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 269

 Score =  223 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 127/269 (47%), Gaps = 7/269 (2%)

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  Y
Sbjct: 1   MTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAY 60

Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622
           L + ++     +    +  I+   L   +      ++ I      +D   +   +     
Sbjct: 61  LASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPL 120

Query: 623 NCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQF 675
           + +  Q              + NR      + +  +  + +  ++ ++  R   G +   
Sbjct: 121 DVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQ 180

Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735
           VL   +  S   +  R  S  + +       ++       IT        +    ++G  
Sbjct: 181 VLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQ 240

Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLR 764
           +QR+KGLGEMNA QLWETT+NPDTR LL+
Sbjct: 241 VQRFKGLGEMNAEQLWETTVNPDTRRLLQ 269


>gi|164456627|dbj|BAF97806.1| gyrase B subunit [Photobacterium profundum]
          Length = 268

 Score =  223 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 136/270 (50%), Positives = 187/270 (69%), Gaps = 4/270 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L+L I R G I+   + +G+ + P+  TG     TGTE+ F PS +
Sbjct: 1   HGVGVSVVNALSEKLELTIFRHGKIHNQIYRHGVPEAPMAETG-VIEGTGTELRFWPSHE 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F+   F+YD L  RLRELSFLNS V I LID+R  + ++    Y+GGI+AF+ YL+ +K
Sbjct: 60  TFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKQDHFVYEGGIKAFIDYLNVNK 118

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+ +        R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR 
Sbjct: 119 TPINKEAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRT 178

Query: 300 ITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
           + +Y+EK    KK K S   GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE 
Sbjct: 179 LNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 238

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388
            + + L+ +L E+P EA  +V K++DAS  
Sbjct: 239 AMGEKLAEYLLENPKEAATVVTKIIDASRA 268


>gi|71040312|dbj|BAE16153.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040314|dbj|BAE16154.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040316|dbj|BAE16155.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  223 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 129/268 (48%), Positives = 175/268 (65%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L +KR G  + M F  G+              +P+ +TG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAITGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|189418939|gb|ACD93715.1| gyrase B subunit [Vibrio rhizosphaerae]
          Length = 237

 Score =  223 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 123/240 (51%), Positives = 174/240 (72%), Gaps = 4/240 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVG+SVVNALS  + L I R G+I+  ++ +G+   PL V G     +GT V F 
Sbjct: 1   SGGLHGVGISVVNALSEKVVLTIHRNGHIHSQTYRHGVPQAPLAVVGDTE-KSGTMVRFW 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  +F+Y+ L  RLRELSFLNS V I LID+R  +  +    Y+GGI AFVS+L
Sbjct: 60  PSNETFTNTEFHYEILAKRLRELSFLNSGVSIKLIDERDSK--QDHFMYEGGIRAFVSHL 117

Query: 237 DRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           +R+K P+ +        R++ I++++AM+WND + E++ CFTNNIPQ+DGGTH++G R+A
Sbjct: 118 NRNKTPIHERVFHFNQEREDGITVEVAMQWNDSFQESIFCFTNNIPQRDGGTHMAGFRAA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + S+++K   SKK+K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S 
Sbjct: 178 LTRTLNSFMDKEGFSKKEKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 237


>gi|158834204|gb|ABW81906.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
          Length = 205

 Score =  223 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 7/205 (3%)

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKL 638
            +S   L   +     + K +      + +  + Q +           D E   +  + L
Sbjct: 1   ALSGASLEKLVHQHYSVQKTLNRMERRYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLL 60

Query: 639 ANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
            ++LN    +        + +      D ++K    GV   ++L+   I S   +    +
Sbjct: 61  VDKLNEKETQGSHYIFVLNKNTENEIYDPVLKIRTHGVDTDYLLDLHFIQSSEYQRICHW 120

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
            +++ +       L     K  I      LD +    R+G+++QRYKGLGEMN  QLWET
Sbjct: 121 GDQLRDLLEPGAFLQRGEKKTCINSFEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWET 180

Query: 754 TLNPDTRSLLRVKITDASQADDLFS 778
           T++P+TR +L+V+I DA  AD LF+
Sbjct: 181 TMDPETRRMLQVRIKDAIAADQLFT 205


>gi|328497275|dbj|BAK18801.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 269

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 127/269 (47%), Gaps = 7/269 (2%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL
Sbjct: 1   TDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYL 60

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            + ++     +    +  I+   L   +      ++ I      +D   +   +     +
Sbjct: 61  ASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLD 120

Query: 624 CESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFV 676
            +  Q              + NR      + +  +  + +  ++ ++  R   G +   V
Sbjct: 121 VDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQV 180

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISM 736
           L   +  S   +  R  S  + +       ++       IT        +    ++G  +
Sbjct: 181 LPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQV 240

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           QR+KGLGEMNA QLWETT+NPDTR LL+V
Sbjct: 241 QRFKGLGEMNAEQLWETTVNPDTRRLLQV 269


>gi|71040324|dbj|BAE16159.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 128/268 (47%), Positives = 174/268 (64%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGRKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            +  GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  EH-RGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKTVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|52546440|dbj|BAD51603.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 126/268 (47%), Positives = 174/268 (64%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            +  GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  EH-RGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G+HL+GLR+A+TR I  Y+  +  ++K K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GSHLTGLRAAMTRVINKYIVDNEIARKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|52546470|dbj|BAD51618.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 126/268 (47%), Positives = 174/268 (64%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            +  GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  EH-RGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           G+HL+GLR+A+TR I  Y+  +  ++K K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GSHLTGLRAAMTRVINKYIVDNEIARKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEELVAKALEEFLLETPN 265


>gi|281332036|emb|CAZ39992.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 255

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 127/256 (49%), Positives = 171/256 (66%), Gaps = 3/256 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + 
Sbjct: 2   QVSGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPST-KRGTTLR 60

Query: 175 FLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS   F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV
Sbjct: 61  FWPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFV 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R
Sbjct: 120 EHLAQLKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFR 179

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR
Sbjct: 180 GALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVR 239

Query: 354 SVVESFVNDGLSAWLE 369
             VES     L  +L+
Sbjct: 240 PAVESAFGQRLEEFLQ 255


>gi|52546296|dbj|BAD51531.1| DNA gyrase subunit B [Burkholderia cepacia]
 gi|52546298|dbj|BAD51532.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 267

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 128/267 (47%), Positives = 174/267 (65%), Gaps = 15/267 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R+G    M F  G+              +P++VTG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +     G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 AGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHP 372
           KLVSSEVR+ VE  V   L  +L E P
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETP 264


>gi|224770931|dbj|BAH28407.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 164/246 (66%), Gaps = 1/246 (0%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS
Sbjct: 1   SVTVIDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
              ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF   +++++ L
Sbjct: 61  ELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFEETEYDFEIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L   PI ++G
Sbjct: 120 SQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHDEPIYVEG 179

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y  +    K+
Sbjct: 180 LKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKE 239

Query: 313 DKRSVI 318
             +++ 
Sbjct: 240 SDKNLS 245


>gi|93277206|gb|ABF06421.1| gyrase B [Streptomyces sp. MC1]
          Length = 350

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 147/338 (43%), Positives = 215/338 (63%), Gaps = 19/338 (5%)

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------- 215
           TG+ VTF    +I    +++++TL  R +E++FLN  + I L D+R              
Sbjct: 1   TGSSVTFWADPEILETTEYSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGA 60

Query: 216 ---PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGY 269
               E + +T  Y+GGI  FV Y   R  + +  + + ++    +  +S+++AM+WN GY
Sbjct: 61  DEKAEVKTVTYHYEGGIVDFVKYLNSRKGEAVHPTVVSLEAEDKDKSLSLEVAMQWNSGY 120

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            E V  F N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T++
Sbjct: 121 TEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAI 180

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+ +P+F  QTK KL ++E ++ V+  V + L+ WL+ +P+EA  I++K + A+  R
Sbjct: 181 ISVKLSEPQFEGQTKTKLGNTEAKTFVQKAVYEHLNDWLDRNPVEAADIIRKGIQAATAR 240

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
            AAR+ARDLTRRKG+L+ ASLPGKLADC   DP K E+F+VEGDSAGGSAK GR+ + QA
Sbjct: 241 VAARKARDLTRRKGLLESASLPGKLADCQSNDPAKCEIFIVEGDSAGGSAKFGRNPQYQA 300

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           ILP+RGKILNVE+AR DK+L +QEI  LI+A GTG+ +
Sbjct: 301 ILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVHE 338


>gi|158834164|gb|ABW81886.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834174|gb|ABW81891.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834180|gb|ABW81894.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834192|gb|ABW81900.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834194|gb|ABW81901.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834196|gb|ABW81902.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834198|gb|ABW81903.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834200|gb|ABW81904.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834202|gb|ABW81905.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834206|gb|ABW81907.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834208|gb|ABW81908.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
          Length = 205

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 7/205 (3%)

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKL 638
            +S   L   +     + K +      + +  + Q +           D E   +  + L
Sbjct: 1   ALSGASLEKLVHQHYSVQKTLNRMERRYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLL 60

Query: 639 ANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
            ++LN    +        + +      D ++K    GV   ++L+   I S   +    +
Sbjct: 61  VDKLNEKETQGSHYIFVLNKNTENEIYDPVLKIRTHGVDTDYLLDLHFIQSSEYQKICHW 120

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
            +++ +       L     K  I      LD +    R+G+++QRYKGLGEMN  QLWET
Sbjct: 121 GDQLRDLLEPGAFLQRGEKKTCINSFEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWET 180

Query: 754 TLNPDTRSLLRVKITDASQADDLFS 778
           T++P+TR +L+V+I DA  AD LF+
Sbjct: 181 TMDPETRRMLQVRIKDAIAADQLFT 205


>gi|190148864|gb|ACE63407.1| DNA gyrase B subunit [Pseudonocardia thermophila]
          Length = 329

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 137/331 (41%), Positives = 199/331 (60%), Gaps = 17/331 (5%)

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           +++  +    L   G     TGT +TF    +IF    +N +T++ RL+E++FLN  + +
Sbjct: 1   TYVRAVP-GELKR-GEPTTRTGTSITFWADPEIFETTTYNVETVRRRLQEMAFLNKGLTM 58

Query: 209 SLIDKRSP---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            L D+R+                + +E    Y  G+E FV++L++ K+P+ +  I     
Sbjct: 59  ILRDERNGDDGEAEEPDAEGYVAKVKEYKFHYPNGLEDFVAHLNKSKEPIHKKLIAYSAE 118

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
               S+++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K  
Sbjct: 119 EPGHSLEVAMQWNSGYTESVYTFANTINTHEGGTHEEGFRAALTSTVNRYAREKKLLKDK 178

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
             ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ WLE +P 
Sbjct: 179 DPALSGDDIREGLAAIVSVKLKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWLERNPT 238

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EAKIIV K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP K EL++VEGD
Sbjct: 239 EAKIIVNKAIQSAQARIAARKARELVRRKAPGDIGGLPGKLADCRSTDPSKCELYIVEGD 298

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           SAGGSAK GR    QAILP+RGKI+NVE+AR
Sbjct: 299 SAGGSAKSGRDSMFQAILPIRGKIINVEKAR 329


>gi|308153194|dbj|BAJ22186.1| DNA gyrase subunit B [Dietzia sp. MBIC1537]
          Length = 449

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 133/280 (47%), Positives = 187/280 (66%), Gaps = 1/280 (0%)

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y  G++ +V+ +++ K  +  + +  +G      +++AM+WN GY E+V  F N I  
Sbjct: 171 FHYPDGLKDYVTAINKSKTAIHPTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINT 230

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y  +    K+   ++ GDD REG  +V+S K+ DP+F  Q
Sbjct: 231 HEGGTHEEGFRAALTSLVNKYAREKKLLKEKDPNLTGDDIREGLAAVISAKIGDPQFEGQ 290

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++EV+  V+  V+D +  W E +P EAK IV K + +S  R AAR+AR++ RRK
Sbjct: 291 TKTKLGNTEVKGFVQRQVSDHVGHWFEANPAEAKTIVNKAIASSQARVAARKAREMVRRK 350

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
              DI  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE+
Sbjct: 351 SATDIGGLPGKLADCRSKDPSKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEK 410

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           +R DK+L + E+  +ITALGTGI ++ FDI+KLRYHKI++
Sbjct: 411 SRIDKVLKNAEVQAIITALGTGIHEE-FDIDKLRYHKIVL 449


>gi|307343760|emb|CBJ19485.1| gyrase B subunit [Micromonospora chokoriensis]
          Length = 332

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 141/335 (42%), Positives = 212/335 (63%), Gaps = 8/335 (2%)

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            I + G ++   + N    +PL   G   + +G+ V+F P  D+F   DF++ T+  RL+
Sbjct: 1   EIHKSGFVWRQQYTNSKP-SPLEK-GETTDRSGSAVSFWPDPDVFETVDFDFQTIYRRLQ 58

Query: 198 ELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           E++FLN +++I L+D+R  E      RE+T +Y+GGI  FV +L+  K P+ ++ +    
Sbjct: 59  EMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGISDFVRHLNASKNPIHKTVVEFGA 118

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
             + +S+++AM+WN+ Y E+V  F N I   +GGTH  G RSALT  +  Y        K
Sbjct: 119 EEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKK-LLK 177

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               + G+D REG  +++S+K+ +P+F  QTK KL ++ V+S V+   N+ L  W + +P
Sbjct: 178 GDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRNP 237

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EAK+I+ K   A+  R AA++AR L RRK +L+  S+PGKLADC   DP++SE+F+VEG
Sbjct: 238 AEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEG 297

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
           DSAGGSAKQGR    QAILP+RGKILNVE+AR D+
Sbjct: 298 DSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 332


>gi|52546388|dbj|BAD51577.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 129/268 (48%), Positives = 174/268 (64%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L + R G  + M F  G+              +P+ VTG  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVTRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAVTGDT 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G +D + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKTVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|281331986|emb|CAZ39967.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 253

 Score =  222 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 127/255 (49%), Positives = 170/255 (66%), Gaps = 3/255 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLVLDIHQGGFHYQQEYADGAALHPLKQVGPST-KRGTTLRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV 
Sbjct: 60  WPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R 
Sbjct: 119 HLAQLKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 ALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 238

Query: 355 VVESFVNDGLSAWLE 369
            VES     L  +L+
Sbjct: 239 AVESAFGQRLEEFLQ 253


>gi|52546466|dbj|BAD51616.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546472|dbj|BAD51619.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546474|dbj|BAD51620.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  222 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 127/268 (47%), Positives = 174/268 (64%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGRKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G ++ + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKTVLHPTIFHIIGEKEGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPS 265


>gi|158834190|gb|ABW81899.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
          Length = 205

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 7/205 (3%)

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKL 638
            +S   L   +     + K +      + +  + Q +           D E   +  + L
Sbjct: 1   ALSGTSLEKLVHQHYSVQKTLNRMERRYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLL 60

Query: 639 ANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
            ++LN    +        + +      D ++K    GV   ++L+   I S   +    +
Sbjct: 61  VDKLNEKETQGSHYIFVLNKNTENEIYDPVLKIRTHGVDTDYLLDLHFIQSSEYQKICHW 120

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
            +++ +       L     K  I      LD +    R+G+++QRYKGLGEMN  QLWET
Sbjct: 121 GDQLRDLLEPGAFLQRGEKKTCINSFEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWET 180

Query: 754 TLNPDTRSLLRVKITDASQADDLFS 778
           T++P+TR +L+V+I DA  AD LF+
Sbjct: 181 TMDPETRRMLQVRIKDAIAADQLFT 205


>gi|52546460|dbj|BAD51613.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 127/268 (47%), Positives = 174/268 (64%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALSSWL+L ++R G  + M F  G+              +P+ V G  
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGRKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             + GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +       +
Sbjct: 61  E-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--DDFAF 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y+++ K  L  +   I G ++ + +++AM+WND Y+ENVLCFTNNIPQ+DG
Sbjct: 118 VGGVKGFVEYINKTKTVLHPTIFHIIGEKEGVGVEVAMQWNDSYNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+  +  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|224770887|dbj|BAH28385.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770911|dbj|BAH28397.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770919|dbj|BAH28401.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770923|dbj|BAH28403.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770961|dbj|BAH28422.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770963|dbj|BAH28423.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770965|dbj|BAH28424.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 164/246 (66%), Gaps = 1/246 (0%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS
Sbjct: 1   SVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
              ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF   +++++ L
Sbjct: 61  ELCEVIVTRDGYVWKQSYKRGAVLTGLERIGEAE-GSGTKVHFKPDHEIFEETEYDFEIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L   PI ++G
Sbjct: 120 SQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHDEPIYVEG 179

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y  +    K+
Sbjct: 180 LKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKE 239

Query: 313 DKRSVI 318
             +++ 
Sbjct: 240 SDKNLS 245


>gi|164456621|dbj|BAF97803.1| gyrase B subunit [Photobacterium leiognathi]
          Length = 264

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 133/265 (50%), Positives = 189/265 (71%), Gaps = 3/265 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  ++L IKR G+I++  + +G+ D PL V G   ++TGT + F PS + F+  +F
Sbjct: 1   VNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGTRIRFWPSEETFTNIEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
            Y+ L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV +L+R+K P+    
Sbjct: 60  QYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFMYEGGIQAFVEHLNRNKTPIHPKV 118

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R ALTR + S+++K
Sbjct: 119 FHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRGALTRTLNSFMDK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L+ 
Sbjct: 179 EGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLAE 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDA 391
           +L E+P +AK +  K++DAS  R+A
Sbjct: 239 FLLENPADAKTVCTKIIDASRAREA 263


>gi|158834182|gb|ABW81895.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834184|gb|ABW81896.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834186|gb|ABW81897.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834188|gb|ABW81898.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
          Length = 205

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 7/205 (3%)

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKL 638
            +S   L   +     + K +      + +  + Q +           D E   +  + L
Sbjct: 1   ALSGASLEKLVHQHYSVQKTLNRMERRYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLL 60

Query: 639 ANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
            ++LN    +        + +      D ++K    GV   ++L+   I S   +    +
Sbjct: 61  VDKLNEKETQGSHYIFVLNKNTENEIYDPVLKIRTHGVDTDYMLDLHFIQSSEYQKICHW 120

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
            +++ +       L     K  I      LD +    R+G+++QRYKGLGEMN  QLWET
Sbjct: 121 GDQLRDLLEPGAFLQRGEKKTCINSFEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWET 180

Query: 754 TLNPDTRSLLRVKITDASQADDLFS 778
           T++P+TR +L+V+I DA  AD LF+
Sbjct: 181 TMDPETRRMLQVRIKDAIAADQLFT 205


>gi|158834166|gb|ABW81887.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834168|gb|ABW81888.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834170|gb|ABW81889.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834172|gb|ABW81890.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
 gi|158834178|gb|ABW81893.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
          Length = 205

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 7/205 (3%)

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKL 638
            +S   L   +     + K +      + +  + Q +           D E   +  + L
Sbjct: 1   ALSGASLEKLVHQHYSVQKTLNRMERRYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLL 60

Query: 639 ANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
            ++LN    +        + +      + ++K    GV   ++L+   I S   +    +
Sbjct: 61  VDKLNEKETQGSHYIFVLNKNTENEIYNPVLKIRTHGVDTDYLLDLHFIQSSEYQKICHW 120

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
            +++ +       L     K  I      LD +    R+G+++QRYKGLGEMN  QLWET
Sbjct: 121 GDQLRDLLEPGAFLQRGEKKTCINSFEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWET 180

Query: 754 TLNPDTRSLLRVKITDASQADDLFS 778
           T++P+TR +L+V+I DA  AD LF+
Sbjct: 181 TMDPETRRMLQVRIKDAIAADQLFT 205


>gi|224770927|dbj|BAH28405.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770967|dbj|BAH28425.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770973|dbj|BAH28428.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 163/246 (66%), Gaps = 1/246 (0%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS
Sbjct: 1   SVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
              ++ + R G +++ S+  G +   L   G A   +GT+V F P  +IF   +++++ L
Sbjct: 61  ELCEVIVTRGGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFEETEYDFEIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L   PI ++G
Sbjct: 120 SQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHDEPIYVEG 179

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y  +    K+
Sbjct: 180 LKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKE 239

Query: 313 DKRSVI 318
             +++ 
Sbjct: 240 SDKNLS 245


>gi|146424621|dbj|BAF62119.1| DNA gyrase B subunit [Rhodopseudomonas lichen]
          Length = 236

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 133/235 (56%), Positives = 172/235 (73%), Gaps = 2/235 (0%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+Q SYKVSGGLHGVGVSVVNALSS L LR+ R G  + + F +G    PL V G A
Sbjct: 1   GGKFDQNSYKVSGGLHGVGVSVVNALSSKLILRVWRNGKEHLIEFAHGDAVAPLSVVGDA 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GTEVTF  S + F+  ++++ TL+HRLREL+FLNS V I L D R    +   M Y
Sbjct: 61  NGRRGTEVTFFASPETFTHIEYDFATLEHRLRELAFLNSGVNILLSDLRHAVEKREEMRY 120

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+  FV YLDR+KKP++ SPI +    + I+++ A+ WND YHENVLCFTNNIPQ+DG
Sbjct: 121 EGGVTEFVKYLDRNKKPIVPSPIVVAADLNGIAVEAALWWNDTYHENVLCFTNNIPQRDG 180

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           GTHL+G R+ALTRQ+T Y + +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 GTHLAGFRAALTRQLTGYADNN--AKKEKVALTGDDCREGLTAVLSVKVPDPKFS 233


>gi|328497265|dbj|BAK18796.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 269

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 126/269 (46%), Gaps = 7/269 (2%)

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566
           DVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL + 
Sbjct: 1   DVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASN 60

Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626
           ++     +    +  I+   L   +      ++ I      +D   +   +     + + 
Sbjct: 61  AVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLDVDK 120

Query: 627 DQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFVLEG 679
            Q              + NR      + +  +  + +  ++ ++  R   G +   VL  
Sbjct: 121 LQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQVLPM 180

Query: 680 SSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRY 739
            +  S   +  R  S  + +       ++       IT        +    ++G  +QR+
Sbjct: 181 GAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQVQRF 240

Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKIT 768
           KGLGEMNA QLWETT+NPDTR LL+V+I 
Sbjct: 241 KGLGEMNAEQLWETTVNPDTRRLLQVRIE 269


>gi|224770893|dbj|BAH28388.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 164/246 (66%), Gaps = 1/246 (0%)

Query: 73  SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           S TV D+GRG+P  +H + G    EVIMT LHAGGKF    YKVSGGLHGVG SVVNALS
Sbjct: 1   SVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALS 60

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
              ++ + R+G +++ S+  G +   L   G A   +GT+V F P  +IF   +++++ L
Sbjct: 61  ELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFEETEYDFEIL 119

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLREL+FLN  + I+LID+R  E +E    Y+GGI++FVSYL+R+K+ L   PI ++G
Sbjct: 120 SQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLXDEPIYVEG 179

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            +D I+++++++++DG++EN+  F NNI   +GGTHL+G ++ALTR +  Y  +    K+
Sbjct: 180 LKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRFGHLKE 239

Query: 313 DKRSVI 318
             +++ 
Sbjct: 240 SDKNLS 245


>gi|158834176|gb|ABW81892.1| DNA gyrase subunit B [Candidatus Hamiltonella defensa]
          Length = 205

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 7/205 (3%)

Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKL 638
            +S   L   +     + K +      + +  + Q +           D E   +  + L
Sbjct: 1   ALSGASLEKLVHQHYSVQKTLNRMERQYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLL 60

Query: 639 ANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693
            ++LN    +        + +      + ++K    GV   ++L+   I S   +    +
Sbjct: 61  VDKLNEKETQGSHYIFVLNKNTENEIYEPVLKIRTHGVDTDYLLDLHFIQSGEYQKICHW 120

Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753
            +++ +       L     K  I      LD +    R+G+++QRYKGLGEMN SQLWET
Sbjct: 121 GDQLRDLLEPGAFLQRGEKKTCINSFEEALDWLMKESRRGLAIQRYKGLGEMNPSQLWET 180

Query: 754 TLNPDTRSLLRVKITDASQADDLFS 778
           T++P+TR +L+V+I DA  AD LF+
Sbjct: 181 TMDPETRRMLQVRIKDAIAADQLFT 205


>gi|310722598|ref|YP_003969421.1| topoisomerase II large subunit [Aeromonas phage phiAS5]
 gi|306021441|gb|ADM79975.1| topoisomerase II large subunit [Aeromonas phage phiAS5]
          Length = 614

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 138/631 (21%), Positives = 238/631 (37%), Gaps = 74/631 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGES----------------GLHHMIYEVLDNAIDE 55
           +   ++L   +       MY+G    E+                GL  +  EV+DN++DE
Sbjct: 2   SQEFKVLSDKEHCLINTDMYVGSVSTETHDVLIDGKFQPLTYVPGLVKITDEVIDNSVDE 61

Query: 56  SLE---GYADIITVTLNMDGSCTVSDNGRGIP---TDLHKEEGISAAEVIMTRLHAGGKF 109
           ++     +A++I +T+  D   +V DNGRG+P       +   +       TR  AG  F
Sbjct: 62  AIRTNFEHANVIEITV-ADNKVSVKDNGRGLPQGTVVTPEGLEVPLPLAAWTRARAGSNF 120

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
              + + + G +GVG ++ N  S            +  +S  N    + +  +   G   
Sbjct: 121 --SADRKTIGKNGVGSALTNFFSDSFIGETGNGETVVTVSCTNN--ADEVSYSVKKGKFK 176

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
           GT VTF+P    F V + + D    ++ RL  L+     V      K+  + +      +
Sbjct: 177 GTVVTFVPDFTRFGVFNLDEDFEQVIKSRLITLAVNFPQVTFKYNGKK-VDSKFQKFAAQ 235

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G                 S                           L F N +  K GG
Sbjct: 236 FGDV-------VCHNDDNVSVFFGTSEEY----------------RQLSFVNGVHTKQGG 272

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI-KMPDPRFSSQTKE 345
            H+ G+  +L+ ++   +++    + +K        +E     L I  +  P++  QTKE
Sbjct: 273 NHVYGVLDSLSEELIPMIKRQHKIEINKAR-----IKECLIIGLFIRNLVAPKYDGQTKE 327

Query: 346 KLVSS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403
           +L S   ++R  +      GL+  + + P     I+     AS +       +    +  
Sbjct: 328 RLSSPWAQIRDHMN-LDYKGLARKILKTPEVIDPII-----ASALAKKEAADKAAATKAQ 381

Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
               A+   K    S     K+ LFL EGDSA G   + R+ E+Q   PLRGK+LNV   
Sbjct: 382 KKAKAANVAKHVKASGLGRTKTTLFLAEGDSAIGPFIRFRNEESQGGYPLRGKMLNVWNL 441

Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA-HIRTLLLTFFF 522
              ++L ++EI  L+  L   +           Y  I IMTDAD DG   I  L + FF+
Sbjct: 442 ADHEVLKNKEISDLLGILNVDLRSK----EAPAYTNIAIMTDADQDGKGSIAMLAIAFFY 497

Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582
           +  P     G ++I++ P Y  T GK   +    E       +   +        +    
Sbjct: 498 KYWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSREEFRSKKFDSKWTHRHIKGLGTLTTE 557

Query: 583 SKN-DLRNFIDDALKIDKLIKDFYPNHDKTF 612
            KN + +  I++ +    +I +  P   +  
Sbjct: 558 GKNCEYKQCIENLVLEQIVIDEDTPAMLEML 588


>gi|209408302|emb|CAP19836.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 286

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 147/288 (51%), Positives = 201/288 (69%), Gaps = 3/288 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L I+REG ++E  + +G+   PL   G     +GTE+ F PS + 
Sbjct: 1   GVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLTAVGVTE-GSGTEIHFRPSPET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV+YL+ +K 
Sbjct: 60  FQNIHFSWDILAKRLRELSFLNSGVGIVLRDERSAKE--ELFKYEGGLSAFVAYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           P+ Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + 
Sbjct: 118 PVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 NYIEQEGLAKKHKISTPGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
                +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 KYFGDFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 285


>gi|289172364|emb|CAX48592.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|289172366|emb|CAX48593.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|289172368|emb|CAX48594.1| DNA gyrase subunit beta [Aeromonas bestiarum]
          Length = 297

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 174/299 (58%), Positives = 228/299 (76%), Gaps = 2/299 (0%)

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   
Sbjct: 1   SSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFC 58

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+D
Sbjct: 59  YEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRD 118

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK
Sbjct: 119 GGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTK 178

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG 
Sbjct: 179 DKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGA 238

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 239 LDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 297


>gi|328497253|dbj|BAK18790.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 269

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 127/269 (47%), Gaps = 7/269 (2%)

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           +MTDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  
Sbjct: 1   LMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNA 60

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
           YL + ++     +    +  I+   L   +      ++ I      +D   +   +    
Sbjct: 61  YLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPP 120

Query: 622 FNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQ 674
            + +  Q              + NR      + +  +  + +  ++ ++  R   G +  
Sbjct: 121 LDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFT 180

Query: 675 FVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI 734
            VL   +  S   +  R  S  + +       ++       IT        +    ++G 
Sbjct: 181 QVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGR 240

Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLL 763
            +QR+KGLGEMNA QLWETT+NPDTR LL
Sbjct: 241 QVQRFKGLGEMNAEQLWETTVNPDTRRLL 269


>gi|328497281|dbj|BAK18804.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 268

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 125/268 (46%), Gaps = 7/268 (2%)

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           G+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL + ++ 
Sbjct: 1   GSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVE 60

Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629
               +    +  I+   L   +      ++ I      +D   +   +     + +  Q 
Sbjct: 61  GAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLDVDKLQA 120

Query: 630 INV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFVLEGSSI 682
                        + NR      + +  +  + +  ++ ++  R   G +   VL   + 
Sbjct: 121 EGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQVLPMGAF 180

Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742
            S   +  R  S  + +       ++       IT        +    ++G  +QR+KGL
Sbjct: 181 ESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQVQRFKGL 240

Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDA 770
           GEMNA QLWETT+NPDTR LL+V+I DA
Sbjct: 241 GEMNAEQLWETTVNPDTRRLLQVRIEDA 268


>gi|183987576|gb|ACC65778.1| topoisomerase II [Pleurotus columbinus]
          Length = 692

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 118/558 (21%), Positives = 224/558 (40%), Gaps = 31/558 (5%)

Query: 120 LHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFL 176
            HG G  + N  S    +    K  G  Y  ++   +       +T ++ N+  T VTF 
Sbjct: 1   RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F +   + DT   L+ R+ +++     V++ L D+R              IEA  
Sbjct: 61  PELTRFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKIKTFKQYVEM-YIEAAT 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +    +     Q+   +   + +   ++A   +DG  + V  F N+I    GGTH++ + 
Sbjct: 120 AGAKENSGGAAQAKPTVIYEQISPRWEVAFATSDGTFQQV-SFANSISTIKGGTHVNYIA 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L++ I +++ K   +   K +      +      ++  + +P F SQTKE L     +
Sbjct: 179 DQLSKSIIAHIAKKNKAATVKPAQ----VKNHMWIFVNALIENPTFDSQTKETLTLPAGK 234

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
                 +++     +++       I+ +VL+ +  +   +  +    ++  L   +    
Sbjct: 235 FGSRPALSEEFMKKVQKS-----SIIDQVLNWAKFKADQQIKKTDGSKRNRLTGMAKLSD 289

Query: 414 LADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
             +   ++ +K  L L EGDSA      G A  GR   N  + PLRGK+LNV  AR D++
Sbjct: 290 ANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRD--NFGVFPLRGKLLNVREARHDQI 347

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + ++EI  +   +G    ++  +++ LRY +++IMTD D DG+HI+ LL+ F     PSL
Sbjct: 348 MKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSL 407

Query: 529 IHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +      +    P+  +T+G   +        E +L     S++      +         
Sbjct: 408 LKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDSKK-----WTAKYYKGLGT 462

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            +  D      ++ K   P       E+A+I   F+ +   +       +          
Sbjct: 463 SSDADAREYFSRMGKHMIPFAIMEDEERALIDLAFSKKKADDR-KEWLRQFKPGTYLDHN 521

Query: 648 KSEKSWHGSINNSDILVK 665
             E  +   IN   IL  
Sbjct: 522 IDEIPFTDFINKELILFS 539


>gi|171673947|gb|ACB47822.1| topoisomerase IV subunit B [Spiroplasma penaei]
          Length = 367

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 150/359 (41%), Positives = 229/359 (63%), Gaps = 5/359 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DF 187
           ALS +LK+ +K+    Y M F NG  +  P+   G+      T VTFLP   IF     F
Sbjct: 10  ALSKYLKIEVKKNNKQYLMEFHNGGQILTPIKEVGTTNETG-TTVTFLPDEKIFKETTIF 68

Query: 188 NYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++ T+Q+R+++L+FLN  ++ISL+D +   E + +   +  GI+ +V  L++     +  
Sbjct: 69  SFSTIQNRIKQLAFLNKGLEISLVDLREEDEEKSVVYQFNNGIKDYVLELNKTIGTPLND 128

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
              ++G  DNI ++  +++ND Y EN+  F NNI   +GGTH  G + A+ R++ +Y + 
Sbjct: 129 VFYVEGIEDNIIVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGTKLAIVRELNNYFKN 188

Query: 307 SFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              + K  +     DD +EG T+++SI+ PDP++  QTK KL +SEV+ +V + V  GL+
Sbjct: 189 INKNNKGNEDKFTWDDVKEGMTTIISIRHPDPQYEGQTKTKLGNSEVKKIVSNIVGKGLN 248

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           ++L E+P +AK I++K+  +   R AA+RA++ TRRK V+D  SLPGKLADC  +D   +
Sbjct: 249 SYLLENPEDAKNIIEKINLSLKARIAAQRAKETTRRKTVMDSFSLPGKLADCETKDSNIA 308

Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
           EL++VEGDSAGGSAK GR+R  QAILPLRGKILNVE+A+  K+  + EI ++ITALG G
Sbjct: 309 ELYIVEGDSAGGSAKAGRNRRFQAILPLRGKILNVEKAKQLKVFENNEINSIITALGAG 367


>gi|167995615|gb|ACA13643.1| GyrB [Thalassospira sp. MCCC 1A02450]
          Length = 306

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 181/306 (59%), Positives = 230/306 (75%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL V G A         +GTEVTF P  +IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVVGDAPLTEDGTPLSGTEVTFYPDKEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +FN  TL+HRLREL+FLNS V ++L D+RS EP EI + Y+GGI AFV YLDR K   
Sbjct: 61  QTEFNLSTLEHRLRELAFLNSGVILTLRDERSGEPTEIKLHYEGGIRAFVEYLDRSKARQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++  I I+G +D I+++LA++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI +Y
Sbjct: 121 IEECISIEGEKDGITVELALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINNY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +KK+K S+ GDD REG T V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIAKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRPVVENVVNDK 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LSQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|164456735|dbj|BAF97860.1| gyrase B subunit [Vibrio tasmaniensis]
          Length = 262

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 135/263 (51%), Positives = 184/263 (69%), Gaps = 3/263 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS + F+  +
Sbjct: 1   VVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTGTEIRFWPSEETFTNIE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I LIDKR  E +     Y+GGI+AFV +L+ +K P++Q 
Sbjct: 60  FHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGIQAFVEHLNTNKTPIIQK 118

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+G R ALTR + S+++
Sbjct: 119 IFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRGALTRTLNSFMD 178

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS
Sbjct: 179 KEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLS 238

Query: 366 AWLEEHPLEAKIIVKKVLDASMV 388
            +L E+P EAKI+  K++DA+  
Sbjct: 239 EFLIENPGEAKIVCSKIIDAARA 261


>gi|66271262|gb|AAY43844.1| DNA gyrase subunit B [Vibrio sp. CRWP 9805]
          Length = 281

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 142/279 (50%), Positives = 203/279 (72%), Gaps = 3/279 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ FS 
Sbjct: 3   VSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSN 61

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P++
Sbjct: 62  TEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPII 120

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+
Sbjct: 121 EKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSF 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + 
Sbjct: 181 MDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEK 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 241 LSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRK 279


>gi|164456753|dbj|BAF97869.1| gyrase B subunit [Grimontia hollisae]
          Length = 231

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 122/233 (52%), Positives = 168/233 (72%), Gaps = 3/233 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R G++++  +  G+ + PL V G    +TGT + F PS
Sbjct: 1   GLHGVGVSVVNALSEKLELTIWRHGHVHQQIYRMGVPEKPLEVIGDTE-ETGTRIRFWPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + FS   F+YD L  RLRELSFLNS V I LID+R  E +     Y+GGI AFV +L+R
Sbjct: 60  DETFSDTTFHYDILAKRLRELSFLNSGVSIKLIDER-EENKHDHFMYEGGIRAFVEHLNR 118

Query: 239 HKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           +K P+  +    +  R++ +S++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALT
Sbjct: 119 NKTPIHPTVFHFEHEREDGVSVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALT 178

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           R + ++++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSS
Sbjct: 179 RTLNNFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 231


>gi|37928124|pdb|1QZR|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces
           Cerevisiae Topoisomerase Ii Bound To Icrf-187
           (Dexrazoxane)
 gi|37928125|pdb|1QZR|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces
           Cerevisiae Topoisomerase Ii Bound To Icrf-187
           (Dexrazoxane)
          Length = 418

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 163/425 (38%), Gaps = 48/425 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 6   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 62

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 63  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 122

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E+I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 123 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 181

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQIS 209
           +    P  +T      + T+VTF P    F +++ + D    ++ R+ +++     + + 
Sbjct: 182 MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVY 241

Query: 210 LIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           L  K             Y   +E      +            I   R N   ++A   +D
Sbjct: 242 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSD 301

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 302 ISFQQI-SFVNSIATTMGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNMF 355

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  ++ + + 
Sbjct: 356 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIMKTDLATRMFEIAD 410

Query: 388 VRDAA 392
             +  
Sbjct: 411 ANEEN 415


>gi|45126705|dbj|BAD12200.1| DNA gyrase subunit B [Halomonas sp. TAG C4]
          Length = 276

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 130/266 (48%), Positives = 180/266 (67%), Gaps = 3/266 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L+L I R+G+++E  + +G+   PL V G     +GT V F PS
Sbjct: 1   GLHGVGVSVVNALSEELRLTIWRQGDVFEQVYHHGVPQAPLAVVG-TTEKSGTRVHFRPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F+  +F+YD L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L++
Sbjct: 60  PETFTSIEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE--ELFHYEGGLKAFVDHLNQ 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  L           D I +++AM+WND + E++ C+TNNIPQ+DGG HL+G R++LTR
Sbjct: 118 NKAVLNPVFHFNAVREDGIEVEVAMQWNDTFTESIFCYTNNIPQRDGGAHLAGFRASLTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            +  Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 178 TLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLD 384
            +    S +L E P EAK IV K+LD
Sbjct: 238 EMGRLFSDYLIEKPNEAKAIVNKMLD 263


>gi|189164050|gb|ACD77135.1| FusA [Geobacter sp. Ply1]
          Length = 244

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 156/244 (63%), Positives = 193/244 (79%)

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           HL+G ++ALTR + +Y   +   K +K SV GDD REG T V+S+K+P P+F  QTK KL
Sbjct: 1   HLAGFKAALTRTMNAYAAANNLLKNEKVSVSGDDLREGLTCVISVKIPQPQFEGQTKTKL 60

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +SEV+  VES +N+ ++ +LEE+P  AK I+ K ++A+  R+AAR+ARDLTR KG LD+
Sbjct: 61  GNSEVKGYVESLLNERMAVYLEENPKVAKDILNKSIEAARAREAARKARDLTRHKGALDM 120

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
             LPGKLADC E+DP   EL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDK
Sbjct: 121 GGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDK 180

Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527
           M+SSQEI TLITALGTGIG+D F+I KLRYH+II+MTDADVDG HI TLLLTFF+R M  
Sbjct: 181 MISSQEIRTLITALGTGIGKDDFNIAKLRYHRIIVMTDADVDGQHILTLLLTFFYRNMRE 240

Query: 528 LIHN 531
           LI  
Sbjct: 241 LIER 244


>gi|328497255|dbj|BAK18791.1| DNA gyrase B [Xanthomonas arboricola]
 gi|328497283|dbj|BAK18805.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 268

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 126/268 (47%), Gaps = 7/268 (2%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL
Sbjct: 1   TDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYL 60

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            + ++     +    +  I+   L   +      ++ I      +D   +   +     +
Sbjct: 61  ASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLD 120

Query: 624 CESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFV 676
            +  Q              + NR      + +  +  + +  ++ ++  R   G +   V
Sbjct: 121 VDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQV 180

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISM 736
           L   +  S   +  R  S  + +       ++       IT        +    ++G  +
Sbjct: 181 LPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQV 240

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLR 764
           QR+KGLGEMNA QLWETT+NPDTR LL+
Sbjct: 241 QRFKGLGEMNAEQLWETTVNPDTRRLLQ 268


>gi|308153090|dbj|BAJ22134.1| DNA gyrase subunit B [Streptomyces rochei]
          Length = 311

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 179/309 (57%), Gaps = 20/309 (6%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  + + +K +G  +   +  G+   PL     A  +TGT VTF
Sbjct: 2   VSGGLHGVGVSVVNALSGKVSVEVKTDGYRWTQDYKMGVPTAPLAQ-HEATEETGTSVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPR 219
               +IF   +++++TL  R +E++FLN  + I L D+R                  E +
Sbjct: 61  WADPEIFETTEYSFETLSRRFQEMAFLNKGLNIRLTDERESAKATSGADEAGADEKAEVK 120

Query: 220 EITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCF 276
            +T  Y+GGI  FV Y   R  + +  + I ++    +  +S+++AM+WN GY E V  F
Sbjct: 121 SVTYHYEGGIVDFVKYLNSRKGEVVHPTIIDLEAEDKDKSLSLEVAMQWNSGYSEGVYSF 180

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD REG T+++S+K+ +
Sbjct: 181 ANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSE 240

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL ++E ++ V+  V + L+ WL+ +P EA  I++K + A+  R AAR+AR
Sbjct: 241 PQFEGQTKTKLGNTEAKTFVQKAVYEHLNDWLDRNPNEAADIIRKGIQAATARVAARKAR 300

Query: 397 DLTRRKGVL 405
           DLTRRKG+L
Sbjct: 301 DLTRRKGLL 309


>gi|257650106|emb|CAX48587.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|257650108|emb|CAX48588.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|257650110|emb|CAX48589.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|257650112|emb|CAX48590.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|289172362|emb|CAX48591.1| DNA gyrase subunit beta [Aeromonas sp. AH-3]
          Length = 297

 Score =  220 bits (560), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 174/299 (58%), Positives = 228/299 (76%), Gaps = 2/299 (0%)

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
           + + TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS V I L D+R  + RE+   
Sbjct: 1   SSSGTGTEVRFWPSPIIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFC 58

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GGI+AFV YL+++K P+          +D I +++AM+WND Y E V CFTNNIPQ+D
Sbjct: 59  YEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRD 118

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GGTHL G R+ALTR + +Y++K   SKK K +  GDD REG  +V+S+K+PDP+FSSQTK
Sbjct: 119 GGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTK 178

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           +KLVSSEV++ VE  + + L  +L E+P +AKI+V K++DA+  R+AAR+AR+LTRRKG 
Sbjct: 179 DKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGA 238

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           LDIA LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+A
Sbjct: 239 LDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 297


>gi|183987566|gb|ACC65773.1| topoisomerase II [Pleurotus pulmonarius]
          Length = 692

 Score =  220 bits (560), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 118/558 (21%), Positives = 221/558 (39%), Gaps = 31/558 (5%)

Query: 120 LHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFL 176
            HG G  + N  S    +    K  G  Y  ++   +       +T ++ N+  T VTF 
Sbjct: 1   RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F +   + DT   L+ R+ +++     V++ L D+R                A V
Sbjct: 61  PELTRFGMTHIDPDTAGLLRKRVYDMAGTAKDVKVYLNDERLKIKTFRQYVEMYTEAATV 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
              +         P  I   + +   ++A   +DG  + V  F N+I    GGTH++ + 
Sbjct: 121 GAKENSGGAAQAKPTVI-YEQISPRWEVAFATSDGTFQQV-SFANSISTIKGGTHVTYIA 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L++ I +++ K   +   K +      +      ++  + +P F SQTKE L     +
Sbjct: 179 DQLSKNIIAHIAKKNKAATVKPAQ----VKNHMWIFVNALIENPTFDSQTKETLTLPAGK 234

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
                 +++     +++       ++ +VL+ +  +   +  +    ++  L   +    
Sbjct: 235 FGSRPILSEEFMKKVQKS-----SVIDQVLNWAKFKADQQIKKTDGSKRNRLTGMAKLSD 289

Query: 414 LADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
             +   ++ +K  L L EGDSA      G A  GR   N  + PLRGK+LNV  AR D++
Sbjct: 290 ANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRD--NFGVFPLRGKLLNVREARHDQI 347

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + ++EI  +   +G    ++  +++ LRY +++IMTD D DG+HI+ LL+ F     PSL
Sbjct: 348 MKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSL 407

Query: 529 IHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +      +    P+  +T+G   +        E +L     S++      S         
Sbjct: 408 LKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDSKK-----WSAKYYKGLGT 462

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            +  D      ++ K   P       E+A+I   F+ +   +       +          
Sbjct: 463 SSDADAREYFSQMGKHMIPFATMEEEERALIDLAFSKKKADDR-KEWLRQFKPGTYLDHN 521

Query: 648 KSEKSWHGSINNSDILVK 665
             E  +   IN   IL  
Sbjct: 522 IDEIPFTDFINKELILFS 539


>gi|308153084|dbj|BAJ22131.1| DNA gyrase subunit B [Streptomyces goshikiensis]
          Length = 323

 Score =  220 bits (560), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 187/324 (57%), Gaps = 21/324 (6%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            Y VSG LHGVGVSVVNALS+ + + +KR+G  +   +  G     L       +  GT 
Sbjct: 1   GYAVSGRLHGVGVSVVNALSTKVAVEVKRDGYRWTQDYKLGAPTAALAKNEET-DAHGTT 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------- 215
           VTF    DIF   +++++TL  R +E++FLN  + ++L D+R                  
Sbjct: 60  VTFWADGDIFETTEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADDPDADAVE 119

Query: 216 PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHEN 272
           P  R +  +Y+GGI  FV Y   R  + +  + I ++       +S+++AM+WN  Y E 
Sbjct: 120 PPARTVKYYYEGGIVDFVKYLNSRKGEMIHPTVIDVEAEDKERMLSVEIAMQWNSQYTEG 179

Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332
           V  F N I   +GGTH  G R+ALT  +  Y       ++   ++ G+D REG T+++S+
Sbjct: 180 VYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREGLTAIISV 239

Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392
           K+ +P+F  QTK KL ++E ++ V+  V++ L+ W + +P+EA  I++K + A+  R AA
Sbjct: 240 KLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLNDWFDRNPVEAADIIRKSIQAATARVAA 299

Query: 393 RRARDLTRRKGVLDIASLPGKLAD 416
           R+ARDLTRRKG+L+ ASLPGKL+D
Sbjct: 300 RKARDLTRRKGLLESASLPGKLSD 323


>gi|167995613|gb|ACA13642.1| GyrB [Thalassospira sp. MCCC 1A02411]
          Length = 306

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 179/306 (58%), Positives = 230/306 (75%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL V G A         +GTEVTF P  +IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVVGDAPLTEDGTPLSGTEVTFYPDKEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +FN  TL+HRLREL+FLNS V ++L D+RS EP EI + Y+GGI AFV YLDR K   
Sbjct: 61  QTEFNLSTLEHRLRELAFLNSGVILTLRDERSGEPTEIKLHYEGGIRAFVEYLDRSKARQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++  I I+G +D I+++LA++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI +Y
Sbjct: 121 IEECISIEGEKDGITVELALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINNY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +K++K ++ GDD REG T V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIAKREKVALSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRPVVENVVNDR 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           LS WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LSQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|45126717|dbj|BAD12206.1| DNA gyrase subunit B [Halomonas sp. ARD M34]
          Length = 276

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 126/266 (47%), Positives = 178/266 (66%), Gaps = 3/266 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L+L I R+G ++E  + +G+   PL V G     +GT V F PS
Sbjct: 1   GLHGVGVSVVNALSAELRLTIWRQGEVFEQMYHHGVPQAPLSVVGKTE-KSGTRVHFRPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F   +F++D L  RLRELSFLNS V I L+D+RS +       Y+GG+ AFV +L+ 
Sbjct: 60  PETFGNIEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLRAFVDHLNT 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  +           D + +++AM+W++ + EN+ C+TNNIPQ+DGG HL+G R+ LTR
Sbjct: 118 NKTVINPVFHFNAVRDDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGAHLAGFRAGLTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 178 TLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLD 384
            ++   S +L E P EAK IV K+LD
Sbjct: 238 EMSRLFSDYLIEKPNEAKAIVNKMLD 263


>gi|302122548|gb|ADK92942.1| topoisomerase IV subunit B [Geobacillus subterraneus]
          Length = 246

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 107/250 (42%), Positives = 147/250 (58%), Gaps = 7/250 (2%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN 167
           F Q  YK SGGLHGVG SVVNALS WL + I R+G IY   F N G     L   G   N
Sbjct: 1   FGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFENGGKPVTTLEKIG-TTN 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT + F P   IFS   F+Y+TL  RLRE +FL   ++I L+D+R+         Y+ 
Sbjct: 60  KTGTIIQFKPDPAIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTE--MCEVFHYEN 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           GIEAFV+YL+  K  L        G ++ I ++ A + +DGY ENVL F NN+  KDGGT
Sbjct: 118 GIEAFVAYLNEEKDVLHPVA-YFAGEQNGIEVEFAFQLHDGYSENVLSFVNNVRTKDGGT 176

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKE 345
           H +G ++A+TR    Y  +    K+  +++ G D REG ++++S+++P+   +F  QTK 
Sbjct: 177 HEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGADIREGLSAIVSVRIPEHLLQFEGQTKG 236

Query: 346 KLVSSEVRSV 355
           KL +SE RS 
Sbjct: 237 KLGTSEARSA 246


>gi|291464150|gb|ADE05600.1| DNA gyrase subunit B [Thalassospira tepidiphila]
          Length = 306

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 175/306 (57%), Positives = 233/306 (76%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIFS 183
           ALS+ LKLR+ R G  + M F  G    PL V G A         +GTEVTF P ++IF+
Sbjct: 1   ALSTLLKLRVWRNGKEHYMEFSGGDAIKPLEVVGDAPLTADGTPLSGTEVTFYPDAEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + DF+  TL+HRLREL+FLNS V ++L D+RS EP E+ + Y+GGI AFV YLDR+K   
Sbjct: 61  MTDFDLPTLEHRLRELAFLNSGVILTLRDERSGEPTEMKLHYEGGIRAFVEYLDRNKARQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++  I I+G +D I++++A++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI +Y
Sbjct: 121 IEEAICIEGEKDGITVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINNY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +KK+K ++ GDD REG + V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDK 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LAQWLEEHPQDARKIVSKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|167995625|gb|ACA13648.1| GyrB [Thalassospira sp. MCCC 1A02803]
 gi|167995635|gb|ACA13653.1| GyrB [Thalassospira sp. MCCC 1A02898]
 gi|167995649|gb|ACA13660.1| GyrB [Thalassospira profundimaris]
          Length = 306

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 175/306 (57%), Positives = 232/306 (75%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIFS 183
           ALS+ LKLR+ R G  + M F  G    PL V G A         +GTEVTF P ++IF+
Sbjct: 1   ALSTLLKLRVWRNGKEHYMEFSGGDAIKPLEVVGDAPLTADGTPLSGTEVTFYPDAEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + DF+  TL+HRLREL+FLNS V ++L D+RS EP E  + Y+GGI AFV YLDR+K   
Sbjct: 61  MTDFDLPTLEHRLRELAFLNSGVILTLRDERSGEPTETKLHYEGGIRAFVEYLDRNKARQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++  I I+G +D I++++A++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI +Y
Sbjct: 121 IEEAICIEGEKDGITVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINNY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +KK+K ++ GDD REG + V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDK 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LAQWLEEHPQDARKIVSKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|281332042|emb|CAZ39995.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 253

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 126/255 (49%), Positives = 170/255 (66%), Gaps = 3/255 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPST-KRGTTLRFWP 59

Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S   F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV +L
Sbjct: 60  SVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVEHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R AL
Sbjct: 119 AQLKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  V
Sbjct: 179 TRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAV 238

Query: 357 ESFVNDGLSAWLEEH 371
           ES     L  +L+E+
Sbjct: 239 ESAFGQRLEEFLQEN 253


>gi|167995555|gb|ACA13613.1| GyrB [Thalassospira sp. MCCC 1A01051]
 gi|167995559|gb|ACA13615.1| GyrB [Thalassospira sp. MCCC 1A01072]
 gi|167995579|gb|ACA13625.1| GyrB [Thalassospira sp. MCCC 1A01300]
 gi|167995583|gb|ACA13627.1| GyrB [Thalassospira sp. MCCC 1A01330]
 gi|167995587|gb|ACA13629.1| GyrB [Thalassospira sp. MCCC 1A01448]
 gi|167995609|gb|ACA13640.1| GyrB [Thalassospira sp. MCCC 1A02094]
          Length = 306

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 179/306 (58%), Positives = 230/306 (75%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND------TGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL + G A         TGTEVTF P ++IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEIVGDAPMTAEGKPLTGTEVTFYPDAEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + +FN  TL+HRLREL+FLNS V ++L D+R  EP E  + Y+GGI AFV YLDR+K P 
Sbjct: 61  MTEFNLPTLEHRLRELAFLNSGVILTLRDERHGEPVETKLHYEGGIRAFVEYLDRNKTPQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++ PI I G +D I+++++++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI SY
Sbjct: 121 IEEPIAIVGEKDGITVEVSLQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINSY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S   KK+K S+ GDD REG T V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIVKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDR 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LQQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|76786503|gb|ABA54995.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 264

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 128/265 (48%), Positives = 184/265 (69%), Gaps = 3/265 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+    + + G +   TGT++ F PS++
Sbjct: 3   HGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQERMKIVGDSE-TTGTQIHFKPSAE 61

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K
Sbjct: 62  TFKNIHFSWDVLAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 119

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
             + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR +
Sbjct: 120 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 179

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 180 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 239

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDA 385
               S +L E+P EAK++V K++DA
Sbjct: 240 GKYFSDFLLENPNEAKLVVGKMIDA 264


>gi|284929879|gb|ADC30025.1| DNA gyrase subunit B [Oscillatoria sp. PCC 8927]
          Length = 294

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 124/291 (42%), Positives = 181/291 (62%), Gaps = 7/291 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVGVSVVNALS W+++ + R+   Y   F  G   
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVFRDKKEYRQRFERGTPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID--- 212
             L         TGT V FLP + IF+   +F+ DT+  RLREL++LN+ V+I+L D   
Sbjct: 61  TELTSKPIKEARTGTSVCFLPDTVIFTSGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 120

Query: 213 --KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
              R   PR  T  Y+GGI  +++Y++  K+PL +  I I G R+N+ I++A++W  D Y
Sbjct: 121 EFLRRETPRIETYCYQGGIREYIAYMNNDKQPLHEDIIYISGERNNVQIEVALQWCTDAY 180

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            + VL F NNI   DGGTHL GL++ LTR + +   K    K+ + ++ G++ REG T++
Sbjct: 181 SDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAMARKRNKLKEGEPNLGGENIREGLTAI 240

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           +S K+PDP F  QTK +L + EVR +V+S V + L+ +LE +P  A  +++
Sbjct: 241 ISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAVIE 291


>gi|281331990|emb|CAZ39969.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 254

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/256 (48%), Positives = 168/256 (65%), Gaps = 3/256 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSV NALS  L + + + G  Y+  F NG   +PL          GT V F
Sbjct: 1   VSGGLHGVGVSVXNALSQKLLVDVFQGGFHYQQEFSNGAAVSPLAKL-ETTTKRGTTVRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS+  F    +F+Y+ L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV 
Sbjct: 60  WPSTVAFHDNVEFHYEILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R 
Sbjct: 119 HLAQLKTPLHPNVIAVSGEHNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 ALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 238

Query: 355 VVESFVNDGLSAWLEE 370
            VE+     L  +L+E
Sbjct: 239 AVENAFGQRLEEFLQE 254


>gi|167995569|gb|ACA13620.1| GyrB [Thalassospira sp. MCCC 1A01166]
 gi|167995571|gb|ACA13621.1| GyrB [Thalassospira sp. MCCC 1A01167]
          Length = 306

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 175/306 (57%), Positives = 229/306 (74%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL VTG A         +GTEVTF P  +IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVTGDAPLTADGTPLSGTEVTFYPDGEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+  TL+HRLREL+FLNS V ++L D+R  EP E  + Y+GGI AFV YLDR+K   
Sbjct: 61  QLEFDLATLEHRLRELAFLNSGVILTLRDERHGEPVETKLHYEGGIRAFVEYLDRNKTRQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++  I I+G +D I++++A++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI +Y
Sbjct: 121 IEESISIEGEKDGITVEVALQWNDSYHEQTLCFTNNIPQRDGGTHMAGFRAALTRQINNY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +KK+K ++ GDD REG + V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDK 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LQQWLEEHPADARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|281331984|emb|CAZ39966.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 252

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 126/254 (49%), Positives = 164/254 (64%), Gaps = 3/254 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L + + + G  Y+  F NG     L          GT V F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRGTTVRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS+  F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV 
Sbjct: 60  WPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R 
Sbjct: 119 HLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 ALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 238

Query: 355 VVESFVNDGLSAWL 368
            VE+     L  +L
Sbjct: 239 AVENAFGARLEEFL 252


>gi|167995561|gb|ACA13616.1| GyrB [Thalassospira sp. MCCC 1A01103]
 gi|167995599|gb|ACA13635.1| GyrB [Thalassospira sp. MCCC 1A02041]
 gi|167995601|gb|ACA13636.1| GyrB [Thalassospira sp. MCCC 1A02042]
          Length = 306

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 177/306 (57%), Positives = 233/306 (76%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIFS 183
           ALS+ LKLR+ R G  + M F  G    PL V G A         +GTEVTF P ++IF+
Sbjct: 1   ALSTLLKLRVWRNGKEHYMEFSGGDAIKPLEVVGDAPLTADGTPLSGTEVTFYPDAEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + DF+  TL+HRLREL+FLNS V ++L D+RS EP EI + Y+GGI AFV YLDR+K   
Sbjct: 61  MTDFDLPTLEHRLRELAFLNSGVILTLRDERSGEPTEIKLHYEGGIRAFVEYLDRNKARQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++  I I+G +D I++++A++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI SY
Sbjct: 121 IEEAICIEGEKDGITVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINSY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +KK+K ++ GDD REG + V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDK 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LAQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|50871514|emb|CAF74829.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 142/286 (49%), Positives = 201/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++ F 
Sbjct: 1   GVSVVNALSEELLLTIRREGKVWEQFYRHGVPQAPLAAVGET-DTSGTQIHFKPSAETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K  +
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTAV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 NQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|45126709|dbj|BAD12202.1| DNA gyrase subunit B [Halomonas sp. TNB I24]
          Length = 276

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 126/266 (47%), Positives = 178/266 (66%), Gaps = 3/266 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L+L I R+G ++E  + +G+   PL V G     +GT V F PS
Sbjct: 1   GLHGVGVSVVNALSAELRLTIWRQGEVFEQMYHHGVPQAPLSVVGKTE-KSGTRVHFRPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F   +F++D L  RLRELSFLNS V I L+D+RS +       Y+GG+ AFV +L+ 
Sbjct: 60  PETFGNIEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLRAFVDHLNT 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  +           D + +++AM+W++ + EN+ C+TNNIPQ+DGG HL+G R+ LTR
Sbjct: 118 NKAVINPVFHFNAVRDDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGAHLAGFRAGLTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 178 TLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLD 384
            ++   S +L E P EAK IV K+LD
Sbjct: 238 EMSRLFSDYLIEKPNEAKAIVNKMLD 263


>gi|321401446|gb|ADW83185.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 252

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 102/252 (40%), Positives = 148/252 (58%), Gaps = 7/252 (2%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGNIYEMSFINGILDNPLVVTGS 164
           GGKF++ SYKVSGGLHGVGVSVVNALS+ L+  +   +G IYE  +  G    P+   G 
Sbjct: 1   GGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIGE 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR---- 219
                GT VTF P   IF+    ++YDTL  R+RELSFLN  + I+  DKR  +      
Sbjct: 61  TT-KRGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNFV 119

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
                   G++ ++ YLD +++P++   I +   +  I +++A+ +N  Y EN+  + NN
Sbjct: 120 SEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVNN 179

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTHL G R+ LTR +  Y + S    K K  + GDD REG T+++S+K+ +P+F
Sbjct: 180 INTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQF 239

Query: 340 SSQTKEKLVSSE 351
             QTK KL + E
Sbjct: 240 EGQTKTKLGNRE 251


>gi|281332056|emb|CAZ40002.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 248

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/249 (50%), Positives = 166/249 (66%), Gaps = 3/249 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPST-KRGTTLRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV 
Sbjct: 60  WPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R 
Sbjct: 119 HLAQLKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 ALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 238

Query: 355 VVESFVNDG 363
            VES     
Sbjct: 239 AVESAFGQR 247


>gi|50871664|emb|CAG15374.1| DNA gyrase subunit B [Pseudomonas mendocina]
          Length = 284

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 143/287 (49%), Positives = 204/287 (71%), Gaps = 4/287 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ F PS + F+
Sbjct: 1   GVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKPSEETFA 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV +L+ +K  +
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEFLNTNKTVV 117

Query: 244 MQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            Q     IQ   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +
Sbjct: 118 NQVFHFNIQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNN 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y+E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +  
Sbjct: 178 YIEQEGLAKKFKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGK 237

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
             + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 YFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 284


>gi|52546294|dbj|BAD51530.1| DNA gyrase subunit B [Burkholderia caryophylli]
          Length = 267

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 123/268 (45%), Positives = 170/268 (63%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALS WL+L ++R+G  Y M F  G++             +P+   G  
Sbjct: 1   GGLHGVGVSCVNALSKWLRLTVRRDGKKYFMEFHRGVVQNRVIEEADGEQVSPMQYLGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +        
Sbjct: 61  E-KRGTEVHFMADETIFGNVEYHYDILSKRIRELSFLNNGVRIRLTDQRSGKE--DDYAL 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV +++R K  L  +   +   ++ + +++AM+WND Y+E+VLCFTNNIPQ+DG
Sbjct: 118 AGGVKGFVEFINRTKTVLHPTIFHVNAEKEGVGVEVAMQWNDSYNESVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+     +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIGDHEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEIVAKALEEFLLETPN 265


>gi|89143180|emb|CAJ57487.1| DNA gyrase subunit B [Microbacterium esteraromaticum]
          Length = 340

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 142/340 (41%), Positives = 205/340 (60%), Gaps = 18/340 (5%)

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE---- 217
           G A ++TGT +TF P  +IF+    F+YDTL+ R ++++FLN  ++I+L D+R       
Sbjct: 1   GEATDETGTAITFWPDPEIFTETIEFDYDTLRTRFQQMAFLNKGLRIALRDERPAFAIED 60

Query: 218 ---------PREITMFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMR 264
                           Y+ G+  +V Y    R  + + +  I  +       IS++LAM+
Sbjct: 61  EVDGTVVSRQPAEVFLYERGLVDYVEYLNKVRKAEVVNEEIIAFESEDTERKISLELAMQ 120

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           W   Y ENV  + N I   +GGTH  G R+ALT  +  Y   +   K+   ++ GDD RE
Sbjct: 121 WTTSYTENVFTYANTINTHEGGTHEEGFRAALTSLVNRYARANNLLKEKDENLSGDDVRE 180

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+V+SIK+ +P+F  QTK KL ++E ++  +  VND L  W + +P +AK +++K +D
Sbjct: 181 GLTAVISIKLGEPQFEGQTKTKLGNTEAKAFTQKIVNDQLGDWFDRNPQQAKNVIRKAID 240

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+AR+  RRK V + A++P KL DC+ +DP  SE+FLVEGDSAGGSA QGR 
Sbjct: 241 AATARLAARKARETARRKSVFESAAMPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRD 300

Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484
              QAIL LRGKILNVERAR DK L ++E+  +I A GTG
Sbjct: 301 PHTQAILALRGKILNVERARLDKALGNKEVQAMIQAFGTG 340


>gi|164456667|dbj|BAF97826.1| gyrase B subunit [Vibrio fortis]
          Length = 261

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 133/263 (50%), Positives = 183/263 (69%), Gaps = 3/263 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS + FS  +F
Sbjct: 1   VNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEETFSNTEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L D+R  E +     ++GGI+AFV +L+ +K P++Q  
Sbjct: 60  HYDILAKRLRELSFLNSGVSIKLRDER-EEDKGDHFMFEGGIQAFVEHLNTNKTPIIQKI 118

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K
Sbjct: 119 FHFDNERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + LS 
Sbjct: 179 EGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLSE 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVR 389
           +L E+P EAK +  K++DA+  R
Sbjct: 239 FLIENPAEAKTVCTKIIDAARAR 261


>gi|167995553|gb|ACA13612.1| GyrB [Thalassospira sp. MCCC 1A01041]
 gi|167995565|gb|ACA13618.1| GyrB [Thalassospira sp. MCCC 1A01140]
 gi|167995641|gb|ACA13656.1| GyrB [Thalassospira sp. MCCC 1A03005]
 gi|167995643|gb|ACA13657.1| GyrB [Thalassospira sp. MCCC 1A03052]
 gi|167995645|gb|ACA13658.1| GyrB [Thalassospira sp. MCCC 1A03093]
          Length = 306

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 179/306 (58%), Positives = 230/306 (75%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND------TGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL + G A         TGTEVTF P ++IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEIVGDAPMTAEGKPLTGTEVTFYPDAEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + +FN  TL+HRLREL+FLNS V ++L D+R  EP E  + Y+GGI AFV YLDR+K P 
Sbjct: 61  MTEFNLPTLEHRLRELAFLNSGVILTLRDERHGEPVETKLHYEGGIRAFVEYLDRNKAPQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++ PI I G +D I+++++++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI SY
Sbjct: 121 IEEPIAIVGEKDGITVEVSLQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINSY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S   KK+K S+ GDD REG T V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIVKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDR 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LQQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|167995549|gb|ACA13610.1| GyrB [Thalassospira sp. MCCC 1A01013]
 gi|167995551|gb|ACA13611.1| GyrB [Thalassospira sp. MCCC 1A01017]
 gi|167995617|gb|ACA13644.1| GyrB [Thalassospira sp. MCCC 1A02753]
 gi|167995619|gb|ACA13645.1| GyrB [Thalassospira sp. MCCC 1A02758]
 gi|167995621|gb|ACA13646.1| GyrB [Thalassospira sp. MCCC 1A02767]
 gi|167995623|gb|ACA13647.1| GyrB [Thalassospira sp. MCCC 1A02785]
 gi|167995627|gb|ACA13649.1| GyrB [Thalassospira sp. MCCC 1A02843]
 gi|167995629|gb|ACA13650.1| GyrB [Thalassospira sp. MCCC 1A02866]
 gi|167995631|gb|ACA13651.1| GyrB [Thalassospira sp. MCCC 1A02873]
 gi|167995633|gb|ACA13652.1| GyrB [Thalassospira sp. MCCC 1A02878]
 gi|167995637|gb|ACA13654.1| GyrB [Thalassospira sp. MCCC 1A02921]
 gi|167995639|gb|ACA13655.1| GyrB [Thalassospira sp. MCCC 1A02935]
          Length = 306

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 179/306 (58%), Positives = 230/306 (75%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND------TGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL + G A         TGTEVTF P ++IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEIVGDAPMTAEGKPLTGTEVTFYPDAEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + +FN  TL+HRLREL+FLNS V ++L D+R  EP E  + Y+GGI AFV YLDR+K P 
Sbjct: 61  MTEFNLPTLEHRLRELAFLNSGVILTLRDERHGEPVETKLHYEGGIRAFVEYLDRNKAPQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++ PI I G +D I+++++++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI SY
Sbjct: 121 IEEPITIVGEKDGITVEVSLQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINSY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S   KK+K S+ GDD REG T V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIVKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDR 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LQQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|183220092|ref|YP_001838088.1| DNA gyrase/topoisomerase subunit B [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910212|ref|YP_001961767.1| DNA topoisomerase subunit B [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774888|gb|ABZ93189.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778514|gb|ABZ96812.1| DNA gyrase/topoisomerase, type IIa, subunit B [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 708

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 150/720 (20%), Positives = 270/720 (37%), Gaps = 130/720 (18%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMI-------YEV----- 48
           M+   + +S ++ + + L  ++ V+ R  M++G     +   H         YEV     
Sbjct: 1   MAQKTEKTSGNSRNFKKLSHVEHVRMRTGMWLGQNSLSTFEQHFFKRDNAGTYEVSHEEL 60

Query: 49  ---------LD----NAIDESLEGYADI----------ITVTLNMDGS-CTVSDNGRGIP 84
                    LD    N +DE  +   D           + V L+ D    T+ DNGRGIP
Sbjct: 61  SDIPAKIKCLDEACMNCVDEYRKNLNDKAIPEKDKMNKLIVQLSTDRKRVTIQDNGRGIP 120

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKFNQ--KSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142
            D         AE +   L  G  F+   K   V+ G +GVG+S+V  +SS+ +++    
Sbjct: 121 AD--------NAEGVYLHLMYGENFDDLAKEDHVA-GQNGVGISLVRMVSSFFRVKTING 171

Query: 143 GNIYEMSF----------------------------INGI--------------LDNPLV 160
           G  Y+  F                             +G               L  P  
Sbjct: 172 GKAYKKMFSIHDDVKKVIRSFKLSKEDTERVHLYYDEHGTFVDCPLLSADQIKQLKAPCD 231

Query: 161 VTGSA-------GNDTGTEVTFLPSSDIFSVQDFNYDT--LQHRLRELSFLNSSVQISLI 211
            TG           D GT V F  +S  F+  D +++   ++  L++++  N  +++  I
Sbjct: 232 KTGMTAVVETAKKEDHGTTVEFELNSAYFNNLDTSFNINLVKQYLQDIAMSNPGLEVVFI 291

Query: 212 DKRSPEPREITMFYKGGIEA-FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            K   E       +K G +  F +    + K              +  + +         
Sbjct: 292 HKTGKEK----YKFKKGFDEIFSNSEMVYYKLDYSDKASASQIHMDTYVVVG-------Q 340

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
              L + N+I    GG+ +  L + L  +I    +     KK       +D R  F   +
Sbjct: 341 NKNLTWVNSIFCPQGGSAIEYLENRLCDEIRKKSQIVSLEKKLNTQCTRNDVRSCFHMYV 400

Query: 331 SIKMPDPRFSSQTKEKLVSS---EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           ++++ +PRF SQ K  L++    ++R  V+  ++  L         E K+++++      
Sbjct: 401 NLRILNPRFKSQDKSYLINDLNEDIRKSVDKHLDKLLKK--TGLIEEIKMVMERRTQMKQ 458

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
           + DA +  R  +R        ++P  +    + +     LF+ EGDSA    +  R+ + 
Sbjct: 459 LEDAQKGLRKASR-------NNIPKLMPPTGKPNDPGRILFVAEGDSAIAGLRPARNPKL 511

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
             + PLRGK LN +     K L ++E+  ++  +G  + Q    I++L Y KI I+TDAD
Sbjct: 512 HGLFPLRGKPLNCKGMSLAKALQNEEMKNIVAIVGLPLDQKVKSIDELNYDKISIITDAD 571

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-----GKSLQYVKDEESLEDY 562
            DG  IR+L+L+FF+   P L   GF+ I   PLY +        K   +  D+   +  
Sbjct: 572 FDGYAIRSLMLSFFYEYWPELFELGFINISAAPLYEVDVKWKDAKKETVFCIDDSDYDKL 631

Query: 563 LINQSLSEEIE---LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
           +   +               G   K  ++  +D  +    +         +        +
Sbjct: 632 VARVNKQGAEITRKKRNKGLGETGKEAMKYAVDHCMTTITIGNKKTAKTTQDLWFHKDYA 691


>gi|167995545|gb|ACA13608.1| GyrB [Thalassospira sp. MCCC 1A00370]
 gi|167995547|gb|ACA13609.1| GyrB [Thalassospira sp. MCCC 1A00385]
 gi|167995563|gb|ACA13617.1| GyrB [Thalassospira sp. MCCC 1A01109]
 gi|167995573|gb|ACA13622.1| GyrB [Thalassospira sp. MCCC 1A01172]
 gi|167995603|gb|ACA13637.1| GyrB [Thalassospira sp. MCCC 1A02059]
 gi|167995605|gb|ACA13638.1| GyrB [Thalassospira sp. MCCC 1A02060]
          Length = 306

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 173/306 (56%), Positives = 229/306 (74%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL V G A         +GTEVTF P  +IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVVGDAPLTEDGTPLSGTEVTFYPDGEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F++ TL+HRLREL+FLNS V ++L D+R  +P E  + Y+GGI AFV YLDR+K   
Sbjct: 61  QLEFDFGTLEHRLRELAFLNSGVILTLRDERHGDPVETKLHYEGGIRAFVEYLDRNKARQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++  I I+G +D I++++A++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI +Y
Sbjct: 121 IEEAISIEGEKDGITVEVALQWNDSYHEQTLCFTNNIPQRDGGTHMAGFRAALTRQINNY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +KK+K ++ GDD REG + V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDK 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LQQWLEEHPADARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|183987572|gb|ACC65776.1| topoisomerase II [Pleurotus eryngii var. ferulae]
          Length = 692

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 117/556 (21%), Positives = 223/556 (40%), Gaps = 27/556 (4%)

Query: 120 LHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFL 176
            HG G  + N  S    +    K  G  Y  ++   +       +T ++ N+  T VTF 
Sbjct: 1   RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITNNSRNEEYTRVTFK 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F +   + DT   L+ R+ +++     V++ L D+R              IEA  
Sbjct: 61  PELTRFGMTHIDADTAGLLRKRVYDMAGTVKDVKVYLNDERLKIKTFKQYVEM-YIEAAT 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +    +     Q+   +   + +   ++A   +DG  + V  F N+I    GGTH++ + 
Sbjct: 120 AGAKENSGGAAQAKPTVIYEQISPRWEVAFATSDGTFQQV-SFVNSISTIKGGTHVNYIA 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L++ I +++ K   +   K +      +      ++  + +P F SQTKE L     +
Sbjct: 179 DQLSKSIIAHIAKKNKAATVKPAQ----VKNHMWIFVNALIENPTFDSQTKETLTLPAGK 234

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
                 +++     +++       I+ +VL+ +  +   +  +    ++  L   +    
Sbjct: 235 FGSRPALSEEFMKKVQKS-----SIIDQVLNWAKFKADQQIKKTDGSKRNRLTGMAKLSD 289

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLS 470
             +   ++ +K  L L EGDSA   A  G +   R N  + PLRGK+LNV  AR D+++ 
Sbjct: 290 ANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRVNFGVFPLRGKLLNVREARHDQIMK 349

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           ++EI  +   +G    ++   ++ LRY +++IMTD D DG+HI+ LL+ F     PSL+ 
Sbjct: 350 NEEIQNIKKIMGLQHNKEYTSVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSLLK 409

Query: 531 NGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
                +    P+  +T+G   +        E +L     S++      +          +
Sbjct: 410 VPEFLVEFVTPIVRVTKGNQRKNFLTIPEYETWLEETPDSKK-----WTAKYYKGLGTSS 464

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649
             D      ++ K   P       E+A+I   F+ +   +       +            
Sbjct: 465 DADAREYFSQMGKHMIPFATMEDEERALIDLAFSKKKADDR-KEWLRQFKPGTYLDHNID 523

Query: 650 EKSWHGSINNSDILVK 665
           E  +   IN   IL  
Sbjct: 524 EIPFTDFINKELILFS 539


>gi|45126711|dbj|BAD12203.1| DNA gyrase subunit B [Halomonas sp. TNB I26]
 gi|45126713|dbj|BAD12204.1| DNA gyrase subunit B [Halomonas sp. SYO J42]
          Length = 276

 Score =  217 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 126/266 (47%), Positives = 179/266 (67%), Gaps = 3/266 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L+L I R+G ++E  + +G+   PL V G     +GT V F PS
Sbjct: 1   GLHGVGVSVVNALSAELRLTIWRQGEVFEQVYHHGVPQAPLGVVGKTE-KSGTRVHFRPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F   +F++D L  RLRELSFLNS V I L+D+RS +       Y+GG++AFV +L+ 
Sbjct: 60  PETFGNIEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFRYEGGLKAFVDHLNT 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  +           D + +++AM+W++ + EN+ C+TNNIPQ+DGG HL+G R+ LTR
Sbjct: 118 NKSVINPVFHFNAIREDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGAHLAGFRAGLTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 178 TLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLD 384
            ++   S +L E P EAK IV K+LD
Sbjct: 238 EMSRLFSEYLVEKPNEAKAIVNKMLD 263


>gi|15078758|ref|NP_149508.1| 045L [Invertebrate iridescent virus 6]
 gi|82039172|sp|Q9QSK1|TOP2_IIV6 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|5725647|gb|AAD48151.1|AF083915_5 045L [Invertebrate iridescent virus 6]
          Length = 1132

 Score =  217 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 140/752 (18%), Positives = 250/752 (33%), Gaps = 109/752 (14%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDG----------------------E 38
           M+ +     Y       L  +D V  RP + IG T                         
Sbjct: 1   MATSNHKKQYT-----TLSDIDHVLLRPEVIIGSTVPMEQTEYVVDENFSEILEKQVFVS 55

Query: 39  SGLHHMIYEVLDNAIDESLEGY--------ADIITVTLNMDGSCTVSDNGRGIPTDLHKE 90
             L  +  EVL NA+D     +           I + +  DG+  + ++G+ I   + KE
Sbjct: 56  EALIRIFVEVLANAVDNI---HRSKGSSTPCKSIKIKIEDDGTTMIHNDGQVI--KISKE 110

Query: 91  EG-----------ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLR- 138
           E            +   E++   L +   ++    + + G +G+GV   N LS   K+  
Sbjct: 111 ENDGIEINGKKCSVYNHELVFGHLRSSSNYDDTVVRQTSGKNGLGVKCTNILSKSFKVIG 170

Query: 139 IK-REGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           +       +   + N +   +   VT S+     TEV + P           ++ L +  
Sbjct: 171 VDPENKKKFVQEWTNNMKETSGPKVTTSSSKTGYTEVIYCPD----------FERLGNFS 220

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
            ++  +     + +    S E   +    K       S   +  K   +  I I     +
Sbjct: 221 SDIIGIFRKHVLDVAMLASSEGVSVYFNDKKLPIKKFSDYTKLFKLE-KESISITEEDGS 279

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
             + +A    DG  + +  F N +  K GG H+ G        + S + K          
Sbjct: 280 SEVTIAFVERDGKKKPI-SFVNGLFTKHGGQHVDGWTKPFFANLLSVLNK-PSKTYKDLK 337

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL---EEHPL 373
           +   D    F   +   +  P+F  Q K  L S  ++  +   +   +  W    E    
Sbjct: 338 LSLKDVTPYFRFFVKSTVDKPQFDCQNKNMLKSPCLKYTIPDKIITKVCKWTSVQELKQS 397

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
             + ++K   +  +     ++ R     K   D A+  G          +K  L + EG 
Sbjct: 398 SFEKLLKGKDNNIIKTLNDKKRRPKVSVKEY-DPANKAGTT------LSEKCTLIVCEGL 450

Query: 434 SAGGSA-------------KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           SA   A                + R+   ILPLRGK LNV  A  DKM+ +  +  L+ A
Sbjct: 451 SAKTYAVAGISTGISFTGTDTKKGRDWFGILPLRGKFLNVRNANNDKMIKNTVVTDLVNA 510

Query: 481 LGTGIG---QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM--------PSLI 529
           +G   G           L Y  III+ D D DG HI  L+L FF            P+L 
Sbjct: 511 MGLTFGMDYSTQKSRKSLNYGSIIIIPDPDEDGIHIEGLVLNFFHHHFSSLFNPVVPNLK 570

Query: 530 HNGFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISK 584
              F+  +K P+  +     +G+        E+   +             +    G    
Sbjct: 571 DFPFISSMKIPIIKVIEKPLKGRREIEFFTHEAFHKFKNENKWHKNHEIKYFKGLGTTKH 630

Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN---R 641
            D+       + +  +  + + N +K F ++         +       +      N   +
Sbjct: 631 EDVPKIFGKKMVVFNIDDNAHENMEKAFKDEEADERKEWLKQYNPNARTFDLDSPNKILQ 690

Query: 642 LNFIAEKSEKSWHGSINNSDILVKRIARGVQE 673
           LN     +E+    SI +    +  +  G++E
Sbjct: 691 LNISTFINEELIKFSIEDCKRSLPHLIDGLKE 722


>gi|89143200|emb|CAJ57497.1| DNA gyrase subunit B [Microbacterium luteolum]
          Length = 356

 Score =  217 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 143/356 (40%), Positives = 212/356 (59%), Gaps = 20/356 (5%)

Query: 141 REGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRE 198
           R+G  +  SF +G      L   G+  ++TGT++TF P   IF+   +F+Y+TL+ R ++
Sbjct: 1   RQGYTWHHSFADGGHPQQALER-GAETDETGTDITFWPDPAIFTEGVEFDYETLRTRFQQ 59

Query: 199 LSFLNSSVQISLIDKR-------------SPEPREITMFYKGGIEAFVSY--LDRHKKPL 243
           ++FLN  ++I L D+R               + R     Y+ G+  +V Y    RH + +
Sbjct: 60  MAFLNKGLRIELHDERAGHTEVIEEGGTSVEQQRGDVFLYERGLVDYVEYLNKVRHAEVV 119

Query: 244 MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
               I  +       IS+++AM+W   Y ENV  + N I   +GGTH  G R+ALT  + 
Sbjct: 120 NDEIIAFESEDAERKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLVN 179

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y   +   K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+  V 
Sbjct: 180 KYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVVG 239

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           D L  WL+ +P +AK +++K +DA+  R AAR+AR+  RRK V + A++P KL DC+ +D
Sbjct: 240 DQLGDWLDRNPTQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSKD 299

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477
           P  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L ++E+  +
Sbjct: 300 PSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNREVQAM 355


>gi|328497279|dbj|BAK18803.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 267

 Score =  217 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 7/267 (2%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL 
Sbjct: 1   DADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLA 60

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
           + ++     +    +  I+   L   +      ++ I      +D   +   +     + 
Sbjct: 61  SNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLDV 120

Query: 625 ESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFVL 677
           +  Q              + NR      + +  +  + +  ++ ++  R   G +   VL
Sbjct: 121 DKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQVL 180

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737
              +  S   +  R  S  + +       ++       IT        +    ++G  +Q
Sbjct: 181 PMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQVQ 240

Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLR 764
           R+KGLGEMNA QLWETT+NPDTR LL+
Sbjct: 241 RFKGLGEMNAEQLWETTVNPDTRRLLQ 267


>gi|39918801|emb|CAE85076.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39918803|emb|CAE85077.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  217 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 142/286 (49%), Positives = 202/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++ F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DSSGTQIHFKPSAETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K P+
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTPV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + SY
Sbjct: 118 NEVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKH 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FADFLLEHPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|39837160|emb|CAE84975.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39837162|emb|CAE84976.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39837166|emb|CAE84978.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39837168|emb|CAE84979.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39837170|emb|CAE84980.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  217 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 141/286 (49%), Positives = 201/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++ F 
Sbjct: 1   GVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPSAETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K  +
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTAV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 NQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|164456763|dbj|BAF97874.1| gyrase B subunit [Vibrio pacinii]
          Length = 262

 Score =  217 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 131/264 (49%), Positives = 185/264 (70%), Gaps = 4/264 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  ++L IKR+G I++  + +G+  +PL V G    +TGT + F PS + F+  +
Sbjct: 1   VVNALSEKVELTIKRKGEIFQQIYHHGVPQSPLTVIGKTE-ETGTRIRFWPSEETFTNIE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L D+R  E +     ++GGI AFV +L+R+K P+ Q 
Sbjct: 60  FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKSDHFMFEGGIRAFVEHLNRNKTPIHQK 118

Query: 247 PIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I++++AM+WNDG+ E V CFTNNIPQ+DGGTHL+G R ALTR + +++
Sbjct: 119 IFYFDHTREEDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFM 178

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           +K   SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +++ L
Sbjct: 179 DKEGYSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKL 238

Query: 365 SAWLEEHPLEAKIIVKKVLDASMV 388
           S +L E+P EAKI+  K++DA+  
Sbjct: 239 SEFLIENPTEAKIVCGKIIDAARA 262


>gi|223674714|gb|ACN13053.1| DNA gyrase subunit B [Pseudomonas sp. 2220]
 gi|223674728|gb|ACN13060.1| DNA gyrase subunit B [Pseudomonas sp. 2102]
 gi|223674734|gb|ACN13063.1| DNA gyrase subunit B [Pseudomonas sp. 2108]
          Length = 221

 Score =  217 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 110/222 (49%), Positives = 150/222 (67%), Gaps = 3/222 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDS 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT++ F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y
Sbjct: 61  E-STGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+ AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 118 EGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GTHL G RSALTR + +Y+E    +KK K +  GDD REG T
Sbjct: 178 GTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLT 219


>gi|50871518|emb|CAF74831.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  217 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 143/286 (50%), Positives = 202/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++ F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DSSGTQIHFKPSAETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K P+
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTPV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + SY
Sbjct: 118 NQVFHFNMQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKH 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FADFLLEHPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|281331982|emb|CAZ39965.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 252

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 127/254 (50%), Positives = 166/254 (65%), Gaps = 3/254 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L + + + G+ Y+  F NG     L     A    GT V F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLLVDVFQNGSHYQQEFSNGAAVTALAKL-EATTKRGTTVRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS+  F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV 
Sbjct: 60  WPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R 
Sbjct: 119 HLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 ALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 238

Query: 355 VVESFVNDGLSAWL 368
            VE+     L  +L
Sbjct: 239 AVENAFGARLEEFL 252


>gi|39837178|emb|CAE84984.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 139/286 (48%), Positives = 198/286 (69%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNAL+  L L I+REG ++E  + +G+   PL       + +GT++ F PSS+ F 
Sbjct: 1   GVSVVNALTEELMLTIRREGKVWEQLYRDGVPQVPLDPADET-DTSGTQIHFKPSSETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K P+
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTPV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            +           + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + SY
Sbjct: 118 NEVFHFNVQRDAGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
              +L EHP EAK +V K++DA+  R+ AR+AR++TRRKG LDIA 
Sbjct: 238 FGDFLLEHPGEAKAVVGKMIDAARAREPARKAREMTRRKGALDIAG 283


>gi|45126707|dbj|BAD12201.1| DNA gyrase subunit B [Halomonas sp. TNB I20]
 gi|45126719|dbj|BAD12207.1| DNA gyrase subunit B [Halomonas sp. NT N97]
 gi|45126721|dbj|BAD12208.1| DNA gyrase subunit B [Halomonas sp. SYM P12]
          Length = 276

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 126/266 (47%), Positives = 178/266 (66%), Gaps = 3/266 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS+ L+L I R+G ++E  + +G+   PL V G     +GT V F PS
Sbjct: 1   GLHGVGVSVVNALSAELRLTIWRQGEVFEQMYRHGVPQAPLGVVGKTE-KSGTRVHFRPS 59

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
            + F   +F++D L  RLRELSFLNS V I L+D+RS +       Y+GG+ AFV +L+ 
Sbjct: 60  PETFGNIEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLRAFVDHLNT 117

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
           +K  +           D + +++AM+W++ + EN+ C+TNNIPQ+DGG HL+G R+ LTR
Sbjct: 118 NKSVINPVFHFNAVRDDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGAHLAGFRAGLTR 177

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+E     KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE 
Sbjct: 178 TLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 237

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLD 384
            ++   S +L E P EAK IV K+LD
Sbjct: 238 EMSRLFSEYLVEKPNEAKAIVNKMLD 263


>gi|50871516|emb|CAF74830.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 143/286 (50%), Positives = 200/286 (69%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+R G ++E  + +G+   PL   G    DTGT++ F PS++ F 
Sbjct: 1   GVSVVNALSEELVLTIRRSGRVWEQVYRHGVPQAPLAAVGETE-DTGTQIHFKPSAETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV YL+ +K P+
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGILLRDERNGKE--EMFKYEGGLSAFVGYLNTNKTPV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 NEIFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNTY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|223674620|gb|ACN13006.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674624|gb|ACN13008.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674628|gb|ACN13010.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674630|gb|ACN13011.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674632|gb|ACN13012.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674634|gb|ACN13013.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674638|gb|ACN13015.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674640|gb|ACN13016.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674644|gb|ACN13018.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674690|gb|ACN13041.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 219

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 112/222 (50%), Positives = 153/222 (68%), Gaps = 3/222 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y
Sbjct: 61  -DTTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+ AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 118 EGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GTHL G RSALTR + +Y+E+   +KK K +  GDD REG T
Sbjct: 178 GTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 219


>gi|223674652|gb|ACN13022.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 222

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 112/222 (50%), Positives = 153/222 (68%), Gaps = 3/222 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +
Sbjct: 2   GGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES 61

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y
Sbjct: 62  -DTTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKY 118

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+ AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 119 EGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDG 178

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GTHL G RSALTR + +Y+E+   +KK K +  GDD REG T
Sbjct: 179 GTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 220


>gi|223674626|gb|ACN13009.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674658|gb|ACN13025.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674660|gb|ACN13026.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674662|gb|ACN13027.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674664|gb|ACN13028.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674670|gb|ACN13031.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674672|gb|ACN13032.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674676|gb|ACN13034.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674678|gb|ACN13035.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674680|gb|ACN13036.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674682|gb|ACN13037.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 221

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 112/222 (50%), Positives = 153/222 (68%), Gaps = 3/222 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y
Sbjct: 61  -DTTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+ AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 118 EGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GTHL G RSALTR + +Y+E+   +KK K +  GDD REG T
Sbjct: 178 GTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 219


>gi|223674636|gb|ACN13014.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674646|gb|ACN13019.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 220

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 112/222 (50%), Positives = 153/222 (68%), Gaps = 3/222 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y
Sbjct: 61  -DTTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+ AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 118 EGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GTHL G RSALTR + +Y+E+   +KK K +  GDD REG T
Sbjct: 178 GTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 219


>gi|214011042|gb|ACJ61296.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|214011044|gb|ACJ61297.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674600|gb|ACN12996.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674602|gb|ACN12997.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674604|gb|ACN12998.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674606|gb|ACN12999.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674608|gb|ACN13000.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674610|gb|ACN13001.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674612|gb|ACN13002.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674614|gb|ACN13003.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674616|gb|ACN13004.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674618|gb|ACN13005.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674642|gb|ACN13017.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674648|gb|ACN13020.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674650|gb|ACN13021.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674654|gb|ACN13023.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674656|gb|ACN13024.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674668|gb|ACN13030.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674674|gb|ACN13033.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674684|gb|ACN13038.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674686|gb|ACN13039.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674688|gb|ACN13040.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 221

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 112/222 (50%), Positives = 153/222 (68%), Gaps = 3/222 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y
Sbjct: 61  -DTTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+ AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 118 EGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GTHL G RSALTR + +Y+E+   +KK K +  GDD REG T
Sbjct: 178 GTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 219


>gi|164456699|dbj|BAF97842.1| gyrase B subunit [Vibrio natriegens]
          Length = 261

 Score =  216 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 129/263 (49%), Positives = 188/263 (71%), Gaps = 3/263 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  ++L I R G+I+  ++ +G    PL V G   + TGT++ F PSS+ F+  +F+Y
Sbjct: 1   ALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSSETFTNTEFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V I L D+R  E +     Y+GGI+AFV +L+ +K P+++    
Sbjct: 60  DILAKRLRELSFLNSGVSIKLSDER-EEDKHDHFMYEGGIQAFVQHLNTNKTPIIEKIFH 118

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K  
Sbjct: 119 FNFEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            S+K K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L
Sbjct: 179 FSRKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDA 391
            E+P EAK++  K++DA+  R+A
Sbjct: 239 VENPSEAKMVCSKIIDAARAREA 261


>gi|169248029|gb|ACA51798.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 315

 Score =  216 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 177/314 (56%), Positives = 233/314 (74%), Gaps = 4/314 (1%)

Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211
           +G    PL V G+      T++ F PS   F+  +F Y+ L  RLRELSFLNS V I L 
Sbjct: 4   HGEPQAPLAVVGTTDTTG-TKIRFWPSDQTFTNVEFVYEILAKRLRELSFLNSGVSIILQ 62

Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGY 269
           D R  E +     ++GGI+AFV++L+R+K P+ Q        R    I +++AM+WND Y
Sbjct: 63  DMR-EEDKSDHFMFEGGIQAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSY 121

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            EN+ C+TNNIPQ+DGG HLSG RSALTR + S+++K   SKK K S  GDD REG T+V
Sbjct: 122 QENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAV 181

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           +S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R
Sbjct: 182 VSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAR 241

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           +AAR+AR++TRRKG LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQA
Sbjct: 242 EAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQA 301

Query: 450 ILPLRGKILNVERA 463
           ILPL+GKILNVE+A
Sbjct: 302 ILPLKGKILNVEKA 315


>gi|57903692|gb|AAW58146.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 312

 Score =  216 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 185/306 (60%), Positives = 238/306 (77%), Gaps = 1/306 (0%)

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
             LQ  LRELSFLNS +++SLID+R  E R     Y+GGI +FV +L + K PL  + I 
Sbjct: 8   KILQSALRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVEHLAQLKTPLHPNVIS 66

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           + G  + I +D A++W D Y E + CFTNNIPQKDGGTHL+G R+ALTR + +Y+E++  
Sbjct: 67  VTGEHNGIVVDAALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGV 126

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           +++ K +  GDD REG  +VLS+K+P+P FSSQTKEKLVSS+V+  VE+     L  +L+
Sbjct: 127 ARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQ 186

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P EA+ I  K++DA+  R+AAR+ARDLTRRKGVLDIA LPGKLADC E+DP  SELF+
Sbjct: 187 ENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFI 246

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489
           VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+GTLITALGTGIG+D 
Sbjct: 247 VEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEVGTLITALGTGIGKDE 306

Query: 490 FDINKL 495
           ++ +KL
Sbjct: 307 YNPDKL 312


>gi|284929883|gb|ADC30027.1| DNA gyrase subunit B [Oscillatoria sp. PCC 9018]
          Length = 294

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 122/291 (41%), Positives = 178/291 (61%), Gaps = 7/291 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVGVSVVNALS WL++ + R+   Y   F  G   
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDKKEYSQRFERGTPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDK-- 213
             L         TGT V+F P + IF+   +F+ D +  RLREL++LN+ V+I+L D   
Sbjct: 61  TELTSKPIKEARTGTSVSFFPDTSIFTTGIEFDCDIIASRLRELAYLNAGVKITLTDNRL 120

Query: 214 ---RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
                  PR  T  Y+GGI  +++Y+++ K+PL +  I   G R N+ I++A++W  D Y
Sbjct: 121 ELLNRETPRIETYCYEGGIREYIAYMNKDKQPLHEDIIYTSGERSNVQIEVALQWCTDAY 180

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            + VL F NNI   DGGTHL GL++ LTR + +   K    K+ + ++ G++ REG T+V
Sbjct: 181 SDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAV 240

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           +S K+PDP F  QTK +L + EVR +V+S V + L+ +LE +P  A  +++
Sbjct: 241 ISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAVIE 291


>gi|281331928|emb|CAZ39959.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 254

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 126/256 (49%), Positives = 165/256 (64%), Gaps = 3/256 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSV NALS  L + + + G  Y+  F NG     L          GT V F
Sbjct: 1   VSGGLHGVGVSVXNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRGTTVRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS+  F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV 
Sbjct: 60  WPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R 
Sbjct: 119 HLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 ALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 238

Query: 355 VVESFVNDGLSAWLEE 370
            VE+     L  +L+E
Sbjct: 239 AVENAFGARLEEFLQE 254


>gi|52546286|dbj|BAD51526.1| DNA gyrase subunit B [Burkholderia andropogonis]
 gi|52546288|dbj|BAD51527.1| DNA gyrase subunit B [Burkholderia andropogonis]
 gi|52546290|dbj|BAD51528.1| DNA gyrase subunit B [Burkholderia andropogonis]
          Length = 267

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 129/268 (48%), Positives = 180/268 (67%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALS WL+L ++R+G  + + F  G++             +P+ V G A
Sbjct: 1   GGLHGVGVSCVNALSKWLRLTVRRDGKKHFLEFNRGVVINRTLETRDGVEVSPIPVVGDA 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            +  GTEV F+   DIF   DF+YD L  R+RELSFLN+ V+I L DKRS +  +     
Sbjct: 61  EH-NGTEVHFMADEDIFGNVDFHYDILSKRIRELSFLNNGVRIRLQDKRSGKEDDYAF-- 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV Y++R K+ L  +     G +DN++++++M+WND ++ENVLCFTNNIPQ+DG
Sbjct: 118 AGGVKGFVEYINRAKQVLHPTIFHAVGEKDNVTVEVSMQWNDSFNENVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR +  Y+ ++  +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVLNKYIVETDAAKKAKIETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ VE  V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVEEVVAKALEDYLLETPN 265


>gi|167995543|gb|ACA13607.1| GyrB [Thalassospira sp. MCCC 1A00350]
 gi|167995557|gb|ACA13614.1| GyrB [Thalassospira sp. MCCC 1A01057]
 gi|167995567|gb|ACA13619.1| GyrB [Thalassospira sp. MCCC 1A01148]
 gi|167995575|gb|ACA13623.1| GyrB [Thalassospira sp. MCCC 1A01275]
 gi|167995595|gb|ACA13633.1| GyrB [Thalassospira sp. MCCC 1A02039]
 gi|167995597|gb|ACA13634.1| GyrB [Thalassospira sp. MCCC 1A02040]
 gi|167995607|gb|ACA13639.1| GyrB [Thalassospira sp. MCCC 1A02093]
 gi|167995611|gb|ACA13641.1| GyrB [Thalassospira sp. MCCC 1A02096]
          Length = 306

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 176/306 (57%), Positives = 233/306 (76%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL V G A         +GTEVTF P ++IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVVGDAPLTEDGTPLSGTEVTFYPDAEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + DF+  TL+HRLREL+FLNS V ++L D+RS +P E  + Y+GGI AFV YLDR+K   
Sbjct: 61  MTDFDLPTLEHRLRELAFLNSGVILTLRDERSGDPVETKLHYEGGIRAFVEYLDRNKVRQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++ PI I+G +D I++++A++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI SY
Sbjct: 121 IEEPISIEGEKDGITVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINSY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +KK+K ++ GDD REG + V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ +ND 
Sbjct: 181 AQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRPVVENILNDR 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LAQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|331029405|gb|AEC49852.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6395]
          Length = 231

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 131/233 (56%), Positives = 167/233 (71%), Gaps = 2/233 (0%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A   
Sbjct: 1   FDPNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGR 60

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEVTFL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG
Sbjct: 61  RGTEVTFLASTETFKNVEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGG 120

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +E FV YLDR+KK L+ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTH
Sbjct: 121 VEEFVKYLDRNKKALVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTH 180

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           L+G R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FSS
Sbjct: 181 LAGFRGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 231


>gi|315466382|emb|CBY84403.1| DNA gyrase beta subunit [Vibrio sp. PP-204]
          Length = 275

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 171/275 (62%), Positives = 226/275 (82%), Gaps = 1/275 (0%)

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            ++GGI AFV +L+ +K P++         R++ IS+++AM+WNDG+ EN+ CFTNNIPQ
Sbjct: 1   MFEGGIRAFVDHLNTNKTPIIDKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQ 60

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R+ALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 61  RDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAVVSVKVPDPKFSSQ 120

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 121 TKDKLVSSEVKSAVESAMGEKLSEFLVENPAEAKMVCSKIIDAARAREAARKAREMTRRK 180

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 181 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 240

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497
           ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRY
Sbjct: 241 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 275


>gi|167995541|gb|ACA13606.1| GyrB [Thalassospira xiamenensis]
          Length = 306

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 178/306 (58%), Positives = 229/306 (74%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND------TGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL + G A         TGTEVTF P ++IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEIVGDAPMTAEGKPLTGTEVTFYPDAEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + +FN  TL+HRLREL+FLNS V ++L D+R  EP E  + Y+GGI AFV YLDR+K P 
Sbjct: 61  MTEFNLPTLEHRLRELAFLNSGVILTLRDERHGEPVETKLHYEGGIRAFVEYLDRNKTPQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++ PI I G +D I+++++++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI SY
Sbjct: 121 IEEPIAIVGEKDGITVEVSLQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINSY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S   KK+K S+ GDD REG T V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIVKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDR 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG  DI+SLPGKLADC ERD  
Sbjct: 241 LQQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGAPDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|167995591|gb|ACA13631.1| GyrB [Thalassospira sp. MCCC 1A02030]
 gi|167995593|gb|ACA13632.1| GyrB [Thalassospira sp. MCCC 1A02031]
          Length = 306

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 174/306 (56%), Positives = 228/306 (74%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIFS 183
           ALS+ LKLRI R G  + M F  G    PL V G A         +GTEVTF P  +IF+
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVVGDAPLTADGTPLSGTEVTFYPDGNIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+  TL+HRLREL+FLNS V ++L D+R  EP E  + Y+GGI AFV YLDR+K   
Sbjct: 61  QLEFDLATLEHRLRELAFLNSGVILTLRDERHGEPVETKLHYEGGIRAFVEYLDRNKTRQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++  I I+G +D I++++A++WND YHE  LCFTNNIPQ+DGGTH++G R+ALTRQI +Y
Sbjct: 121 IEESIVIEGEKDGITVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRAALTRQINNY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +KK+K ++ GDD REG + V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDK 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L  WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LQQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|52546292|dbj|BAD51529.1| DNA gyrase subunit B [Burkholderia caryophylli]
          Length = 267

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 122/268 (45%), Positives = 169/268 (63%), Gaps = 15/268 (5%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165
           GGLHGVGVS VNALS WL+L ++R+G  Y M F  G++             +P+   G  
Sbjct: 1   GGLHGVGVSCVNALSKWLRLTVRRDGKKYFMEFHRGVVQNRVIEEADGEQVSPMQYLGET 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
               GTEV F+    IF   +++YD L  R+RELSFLN+ V+I L D+RS +        
Sbjct: 61  E-KRGTEVHFMADETIFGNVEYHYDILSKRIRELSFLNNGVRIRLTDQRSGKE--DDYAL 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            GG++ FV +++R K  L  +   +   ++ + +++AM+WND Y+E+VLCFTNNIPQ+DG
Sbjct: 118 AGGVKGFVEFINRTKTVLHPTIFHVNAEKEGVGVEVAMQWNDSYNESVLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTHL+GLR+A+TR I  Y+     +KK K    GDD REG + VLS+K+P+P+FSSQTK+
Sbjct: 178 GTHLTGLRAAMTRVINKYIGDHEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTKD 237

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           KLVSSEVR+ V   V   L  +L E P 
Sbjct: 238 KLVSSEVRAPVGEIVAKALEEFLLETPN 265


>gi|223674732|gb|ACN13062.1| DNA gyrase subunit B [Pseudomonas sp. 2104]
          Length = 221

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 110/224 (49%), Positives = 151/224 (67%), Gaps = 3/224 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDS 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT++ F  SS+ F    F++D L  R+RELSFLNS V I L D+RS +       Y
Sbjct: 61  E-TTGTQIHFKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+ AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 118 EGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           GTHL G RSALTR + +Y+E+   +KK K +  GDD REG T +
Sbjct: 178 GTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTXI 221


>gi|284929877|gb|ADC30024.1| DNA gyrase subunit B [Oscillatoria sp. PCC 8926]
          Length = 294

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 124/291 (42%), Positives = 179/291 (61%), Gaps = 7/291 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVGVSVVNALS WL++ + R+   Y   F  G   
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDKKEYSQRFERGTPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID--- 212
             L         TGT V+FLP + IF+   +F+ DT+  RLREL++LN+ V+I+L D   
Sbjct: 61  TELTSKPIKEARTGTSVSFLPDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 120

Query: 213 --KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
                  PR  T  Y+GGI  +++Y++  K+PL +  I   G R N+ I++A++W  D Y
Sbjct: 121 ELLNRENPRIETYCYQGGIREYIAYMNNDKQPLHEDIIYTCGERSNVQIEVALQWCTDAY 180

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            + VL F NNI   DGGTHL GL++ LTR + +   K    K+ + ++ G++ REG T+V
Sbjct: 181 SDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAV 240

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           +S K+PDP F  QTK +L + EVR +V+S V + L+ +LE +P  A  +++
Sbjct: 241 ISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGVADAVIE 291


>gi|288567|emb|CAA78815.1| DNA topoisomerase II [Homo sapiens]
          Length = 400

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 137/362 (37%), Gaps = 41/362 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 50  YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 109

Query: 54  DESLE-GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I V+++ +    ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 110 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 169

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY--EMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    +   +  + +++N ++            + 
Sbjct: 170 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 229

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F ++  + D    +  R  +L+     V++    K+            
Sbjct: 230 YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKK---------LPV 280

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K       +++     N   D+ +  ++   + +  F N+I    GG
Sbjct: 281 NGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQI-SFVNSIATTKGG 339

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K   +     SV     +      ++  + +P F SQTKE 
Sbjct: 340 RHVDYVVDQVVGKLIEVVKKKNKAG---VSVKPFQVKNHIWVFINCLIENPTFDSQTKEN 396

Query: 347 LV 348
           + 
Sbjct: 397 MT 398


>gi|39837180|emb|CAE84985.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39918797|emb|CAE85074.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39918799|emb|CAE85075.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|50871502|emb|CAF74823.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|50871506|emb|CAF74825.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|50871508|emb|CAF74826.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|50871510|emb|CAF74827.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|50871512|emb|CAF74828.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|163263226|emb|CAI54234.2| DNA gyrase subunit B [Pseudomonas chloritidismutans]
          Length = 283

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 143/286 (50%), Positives = 201/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PSS+ F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKPSSETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K P+
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTPV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            +         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + SY
Sbjct: 118 NEVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
              +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FGDFLLEHPGEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|34810356|pdb|1PVG|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces
           Cerevisiae Topoisomerase Ii
 gi|34810357|pdb|1PVG|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces
           Cerevisiae Topoisomerase Ii
          Length = 418

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/425 (20%), Positives = 159/425 (37%), Gaps = 48/425 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 6   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCXIEKNVTIV 62

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 63  PGLFKIFDEILVNAADNKVRDPSXKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 122

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 123 EXIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 181

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQIS 209
                P  +T      + T+VTF P    F  ++ + D L   + R+ +++     + + 
Sbjct: 182 XSICHPPKITSYKKGPSYTKVTFKPDLTRFGXKELDNDILGVXRRRVYDINGSVRDINVY 241

Query: 210 LIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           L  K             Y   +E      +            I   R N   ++A   +D
Sbjct: 242 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSD 301

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 302 ISFQQI-SFVNSIATTXGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNXF 355

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  +  + + 
Sbjct: 356 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIXKTDLATRXFEIAD 410

Query: 388 VRDAA 392
             +  
Sbjct: 411 ANEEN 415


>gi|39837164|emb|CAE84977.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 141/286 (49%), Positives = 202/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+ + PL   G   + +GT++ F PS++ F 
Sbjct: 1   GVSVVNALSEELLLTIRREGKVWEQLYRHGVPEAPLAAVGET-DTSGTQIHFKPSAETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K  +
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTAV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 NQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|223674730|gb|ACN13061.1| DNA gyrase subunit B [Pseudomonas sp. 2103]
 gi|223674736|gb|ACN13064.1| DNA gyrase subunit B [Pseudomonas sp. 2110]
 gi|223674740|gb|ACN13066.1| DNA gyrase subunit B [Pseudomonas sp. 2150]
          Length = 221

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 111/222 (50%), Positives = 150/222 (67%), Gaps = 3/222 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDS 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y
Sbjct: 61  E-TTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+ AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 118 EGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GTHL G RSALTR + +Y+E    +KK K +  GDD REG T
Sbjct: 178 GTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLT 219


>gi|183987584|gb|ACC65782.1| topoisomerase II [Pleurotus cornucopiae]
          Length = 692

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 118/558 (21%), Positives = 223/558 (39%), Gaps = 31/558 (5%)

Query: 120 LHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFL 176
            +G G  + N  S    +    K  G  Y  ++   +       +T ++ N+  T VTF 
Sbjct: 1   RNGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F +   + DT   L+ R+ +++     V++ L D+R              IEA  
Sbjct: 61  PELTRFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKIKTFKQYVEM-YIEAAT 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +    +     Q+   +   + +   ++A   +DG  + V  F N+I    GGTH++ + 
Sbjct: 120 AGAKENSGGAAQAKPTVIYEQISPRWEVAFATSDGTFQQV-SFANSISTIKGGTHVNYIA 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L++ I +++ K   +   K +      +      ++  + +P F SQTKE L     +
Sbjct: 179 DQLSKSIIAHIAKKNKAATVKPAQ----VKNHMWIFVNALIENPTFDSQTKETLTLPAGK 234

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
                 +++     +++       I+ +VL+ +  +   +  R    ++  L   +    
Sbjct: 235 FGSRPALSEEFMKKVQKS-----SIIDQVLNWAKFKADQQIKRTDGSKRNRLTGMAKLSD 289

Query: 414 LADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
             +   ++ +K  L L EGDSA      G A  GR   N  + PLRGK+LNV  AR D++
Sbjct: 290 ANNAGTKNAEKYTLILTEGDSAKSLAVAGLAVVGRD--NFGVFPLRGKLLNVREARHDQI 347

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + ++EI  +   +G    ++  +++ LRY +++IMTD D DG HI+ LL+ F     PSL
Sbjct: 348 MKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDQDGTHIKGLLINFLDHFYPSL 407

Query: 529 IHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +      +    P+  +T+G   +        E +L     S++      +         
Sbjct: 408 LKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDSKK-----WTAKYYKGLGT 462

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            +  D      ++ K   P       E+A+I   F+ +   +       +          
Sbjct: 463 SSDADAREYFSQMGKHMIPFATMEDEERALIDLAFSKKKADDR-KEWLRQFKPGTYLDHN 521

Query: 648 KSEKSWHGSINNSDILVK 665
             E  +   IN   IL  
Sbjct: 522 IDEIPFTDFINKELILFS 539


>gi|284929871|gb|ADC30021.1| DNA gyrase subunit B [Planktothrix agardhii NIVA-CYA 68]
 gi|284929873|gb|ADC30022.1| DNA gyrase subunit B [Planktothrix sp. PCC 7811]
 gi|284929887|gb|ADC30029.1| DNA gyrase subunit B [Planktothrix agardhii PCC 9239]
 gi|284929889|gb|ADC30030.1| DNA gyrase subunit B [Planktothrix agardhii PCC 9625]
 gi|284929895|gb|ADC30033.1| DNA gyrase subunit B [Planktothrix agardhii PCC 9702]
 gi|284929897|gb|ADC30034.1| DNA gyrase subunit B [Planktothrix agardhii PCC 9801]
 gi|284929903|gb|ADC30037.1| DNA gyrase subunit B [Planktothrix agardhii PCC 10606]
 gi|284929905|gb|ADC30038.1| DNA gyrase subunit B [Planktothrix agardhii PCC 10607]
          Length = 294

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 125/291 (42%), Positives = 179/291 (61%), Gaps = 7/291 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVGVSVVNALS WL++ + R+   Y   F  G   
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID--- 212
             L         TGT V+FLP + IF+   +F+ DT+  RLREL++LN+ V+I+L D   
Sbjct: 61  TELTSKPIKEARTGTSVSFLPDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 120

Query: 213 --KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
                  PR  T  Y+GGI  +++Y++  K+PL +  I   G R N+ I++A++W  D Y
Sbjct: 121 ELLNRENPRIETYCYEGGIREYIAYMNNDKQPLHEDIIYTCGERSNVQIEVALQWCTDAY 180

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            + VL F NNI   DGGTHL GL++ LTR + +   K    K+ + ++ G++ REG T+V
Sbjct: 181 SDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAV 240

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           +S K+PDP F  QTK +L + EVR +V+S V + L+ +LE +P  A  I++
Sbjct: 241 ISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAIIE 291


>gi|39837176|emb|CAE84983.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 142/286 (49%), Positives = 202/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++ F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKPSAETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K P+
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTPV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + SY
Sbjct: 118 NQVFHFNIQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRH 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FADFLLENPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|58415318|emb|CAH04917.1| DNA gyrase subunit B [Subtercola boreus]
 gi|117675815|emb|CAL69178.1| DNA gyrase subunit B [Subtercola boreus]
          Length = 306

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 133/305 (43%), Positives = 199/305 (65%), Gaps = 4/305 (1%)

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--LDRHKKPLM 244
           F+Y+TL+ R ++++FLN  ++++L D+R  E   ++  Y+ G+  +V Y    +  + + 
Sbjct: 2   FDYETLRARFQQMAFLNKGLRLTLTDQRGDEDVVVSYLYEKGLVDYVEYLNRAKKNELVH 61

Query: 245 QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +  I  +       IS+++AM+W +GY E+V  + N I   +GGTH  G R+ALT  +  
Sbjct: 62  EEVISFESEAPDRKISLEVAMQWTNGYTESVHTYANTINTHEGGTHEEGFRAALTSLVNK 121

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y  +    K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+     
Sbjct: 122 YAREKQILKEKDENLTGDDVREGLTAVVSIKLAEPQFEGQTKTKLGNTEAKAFVQRVAGK 181

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ W +  P E + I++K + AS  R AAR+AR+ TRRKG+L+   +PGKL DCS RDP
Sbjct: 182 ELADWFDRKPTEVREIIRKAIQASQARMAARKAREQTRRKGLLEGGGMPGKLKDCSSRDP 241

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            KSE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L + E+  +ITA G
Sbjct: 242 VKSEIFIVEGDSAGGSAIQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMITAFG 301

Query: 483 TGIGQ 487
            GIG+
Sbjct: 302 AGIGE 306


>gi|281331662|emb|CAZ40025.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 259

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 128/261 (49%), Positives = 170/261 (65%), Gaps = 3/261 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L + + + G+ Y+  F NG    PL     A    GT V F PS+ 
Sbjct: 1   HGVGVSVVNALSQKLLVDVFQNGSHYQQEFSNGAAVTPLAKL-EATTKRGTTVRFWPSTV 59

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L + 
Sbjct: 60  AFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQL 118

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K PL  + I + G  + I +++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR 
Sbjct: 119 KTPLHPNVISVTGEHNGIVVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRV 178

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE+ 
Sbjct: 179 LNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENA 238

Query: 360 VNDGLSAWLEEHPLEAKIIVK 380
               L  +L+E+P EAK I  
Sbjct: 239 FGARLEEFLQENPNEAKAIAG 259


>gi|164456717|dbj|BAF97851.1| gyrase B subunit [Listonella pelagia]
          Length = 260

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 132/262 (50%), Positives = 182/262 (69%), Gaps = 3/262 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS + FS  +F+
Sbjct: 1   NALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEETFSNTEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I L D+R  E +     ++GGI+AFV +L+ +K P++Q   
Sbjct: 60  YDILAKRLRELSFLNSGVSIKLRDER-EEDKGDHFMFEGGIQAFVEHLNTNKTPIIQKIF 118

Query: 249 RIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K 
Sbjct: 119 HFDNERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKE 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + + LS +
Sbjct: 179 GFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEF 238

Query: 368 LEEHPLEAKIIVKKVLDASMVR 389
           L E+P EAK +  K++DA+  R
Sbjct: 239 LIENPAEAKTVCTKIIDAARAR 260


>gi|146431204|gb|ABQ40585.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 219

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 111/221 (50%), Positives = 154/221 (69%), Gaps = 3/221 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADK-SDHFMFEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           L+G R+ALTR + S+++K   SKK K +  GDD REG T+V
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAV 219


>gi|19909787|dbj|BAB87089.1| DNA gyrase subunit B [Rhodoplanes sp. HMD01017]
          Length = 221

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 133/219 (60%), Positives = 165/219 (75%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALSSWLKL I R+G  + M F +G    PL V G +    G
Sbjct: 1   QDSYKVSGGLHGVGVSVVNALSSWLKLTIWRDGKTHAMEFRHGEAVAPLAVIGDSDGRRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTFLPS++ F++ +F++ TL+HRLREL+FLNS V+I L DKR    +   M Y+GG+E
Sbjct: 61  TEVTFLPSTETFTMTEFDWATLEHRLRELAFLNSGVRIVLTDKRHAVEKREEMHYEGGVE 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           AFV Y+DR+KKPL+  PI I+  RD I ++ A+ WNDGYHE VLCFTNNIPQ+DGGTHL+
Sbjct: 121 AFVRYVDRNKKPLIADPIVIKSGRDGIEVECALWWNDGYHEAVLCFTNNIPQRDGGTHLA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
           G R ALTRQ+TSY E    +KK+K ++ GDDCREG T+V
Sbjct: 181 GFRGALTRQVTSYAESGGVAKKEKVALTGDDCREGLTAV 219


>gi|330979122|gb|EGH78031.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 476

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 146/480 (30%), Positives = 213/480 (44%), Gaps = 8/480 (1%)

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
             +TGT V F P    F    F+   L+H L+  + L   + +S  DK S E  E     
Sbjct: 4   KRNTGTSVYFAPDPKYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYED 63

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
                   S  +  + P         G+++ +     +   +G       + N IP   G
Sbjct: 64  GLRSYLQDSVTEFLRLPDEPFCGSFTGNKEAVDW-ALLWLPEGGDSVQESYVNLIPTAQG 122

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           GTH++GLR  L   +  + E      +    +  +D  E    VLS+KM +P+FS QTKE
Sbjct: 123 GTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKE 181

Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           +L S E  + V   V D  S WL  H      +    ++ +       +A     RK + 
Sbjct: 182 RLSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRIT 238

Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465
              +LPGKLADC+ +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN      
Sbjct: 239 QGPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDG 298

Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525
            ++L+SQE+  +  A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +  
Sbjct: 299 GEVLASQEVHNIAVAIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHF 356

Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585
             L+  G +Y+  PPLY I  GK + Y  DE   +  L      ++      ++      
Sbjct: 357 RPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGE 416

Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
                + +   +D   +         F   + +  +   +       S      N    +
Sbjct: 417 MNPPQLRE-TTMDPNTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 475



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 393 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 452

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 453 LAKKRAGD----RKSWLES 467


>gi|146431190|gb|ABQ40578.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 218

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/219 (50%), Positives = 152/219 (69%), Gaps = 3/219 (1%)

Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169
           +  SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + T
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQT 59

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI
Sbjct: 60  GTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADK-SDHFMFEGGI 118

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 119 QAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 178

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           L+G R+ALTR + S+++K   SKK K +  GDD REG T
Sbjct: 179 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLT 217


>gi|66271248|gb|AAY43837.1| DNA gyrase subunit B [Vibrio sp. SW 9702]
          Length = 281

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 140/283 (49%), Positives = 205/283 (72%), Gaps = 3/283 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +F
Sbjct: 1   VNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++  
Sbjct: 60  HYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKI 118

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K
Sbjct: 119 FHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS 
Sbjct: 179 EGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLSE 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 239 FLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAG 281


>gi|223674744|gb|ACN13068.1| DNA gyrase subunit B [Pseudomonas sp. 2156]
          Length = 219

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/222 (49%), Positives = 150/222 (67%), Gaps = 3/222 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF   SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +
Sbjct: 1   GGKFXDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDS 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
              TGT++ F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y
Sbjct: 61  E-TTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+ AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 118 EGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GTHL G RSALTR + +Y+E+   +KK K +  GDD REG T
Sbjct: 178 GTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 219


>gi|223674718|gb|ACN13055.1| DNA gyrase subunit B [Pseudomonas sp. 2137]
 gi|223674720|gb|ACN13056.1| DNA gyrase subunit B [Pseudomonas sp. 2188]
          Length = 221

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/222 (49%), Positives = 151/222 (68%), Gaps = 3/222 (1%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA 165
           GGKF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGES 60

Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225
            + TGT++ F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y
Sbjct: 61  -DTTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKY 117

Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
           +GG+ AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DG
Sbjct: 118 EGGLRAFVDYLNTNKTTVNQVFHFNVQREDGIGVEVALQWNDSFNENLLCFTNNIPQRDG 177

Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GTHL G RSALTR + +Y+E    +KK K +  GDD REG T
Sbjct: 178 GTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLT 219


>gi|284929885|gb|ADC30028.1| DNA gyrase subunit B [Planktothrix sp. PCC 9214]
          Length = 294

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 123/291 (42%), Positives = 181/291 (62%), Gaps = 7/291 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVGVSVVNALS W+++ + R+   Y   F  G   
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVFRDKKEYRQRFERGTPV 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR- 214
             L       N TGT + F P S IF+   +F+ DT+  RLREL++LN+ V+++L D R 
Sbjct: 61  TELTSKPIKENRTGTSLRFFPDSLIFTTGIEFDCDTIASRLRELAYLNAGVKVTLSDHRL 120

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
                  PR  T  Y+GGI  +++Y++  K+PL +  I I G R+N+ I++A++W  D Y
Sbjct: 121 ELLKRETPRIETYCYEGGIREYIAYMNNDKQPLHEDIIYISGERNNVQIEVALQWCTDAY 180

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            + +L F NNI   DGGTHL GL++ LTR + +   K    K+ + ++ G++ REG T+V
Sbjct: 181 SDTILGFANNIRTIDGGTHLEGLKTVLTRTLNTIARKRNKLKEGEANLGGENIREGLTAV 240

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           +S K+PDP F  QTK +L + EVR +V+S V + L+ +LE +P  A  +++
Sbjct: 241 ISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAVIE 291


>gi|284929857|gb|ADC30014.1| DNA gyrase subunit B [Planktothrix rubescens CCAP 1459/30]
 gi|284929859|gb|ADC30015.1| DNA gyrase subunit B [Planktothrix rubescens CCAP 1459/40]
 gi|284929861|gb|ADC30016.1| DNA gyrase subunit B [Planktothrix rubescens CCAP 1460/10]
 gi|284929863|gb|ADC30017.1| DNA gyrase subunit B [Planktothrix rubescens CCAP 1460/18]
 gi|284929865|gb|ADC30018.1| DNA gyrase subunit B [Planktothrix agardhii CCAP 1459/11A]
 gi|284929867|gb|ADC30019.1| DNA gyrase subunit B [Planktothrix rubescens CCAP 1459/14]
 gi|284929869|gb|ADC30020.1| DNA gyrase subunit B [Planktothrix rubescens NIES-1266]
 gi|284929875|gb|ADC30023.1| DNA gyrase subunit B [Planktothrix rubescens NIVA-CYA 18]
 gi|284929893|gb|ADC30032.1| DNA gyrase subunit B [Planktothrix agardhii PCC 9637]
 gi|284929899|gb|ADC30035.1| DNA gyrase subunit B [Planktothrix rubescens PCC 10106]
 gi|284929901|gb|ADC30036.1| DNA gyrase subunit B [Planktothrix agardhii PCC 10110]
          Length = 294

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 126/291 (43%), Positives = 179/291 (61%), Gaps = 7/291 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E ++T LHAGGKF    YKVSGGLHGVGVSVVNALS WL++ + R+   Y   F  G   
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID--- 212
             L         TGT V FLP + IF+   +F+ DT+  RLREL++LN+ V+I+L D   
Sbjct: 61  TELTSKPIKEARTGTSVCFLPDTVIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 120

Query: 213 --KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
              R   PR  T  Y+GGI  +++Y++  K+PL +  I   G R N+ I++A++W  D Y
Sbjct: 121 ELLRRETPRIETYRYEGGIREYIAYMNNDKQPLHEDIIYTCGERSNVQIEVALQWCTDAY 180

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            + VL F NNI   DGGTHL GL++ LTR + +   K    K+ + ++ G++ REG T+V
Sbjct: 181 SDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAV 240

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           +S K+PDP F  QTK +L + EVR +V+S V + L+ +LE +P  A  I++
Sbjct: 241 ISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAIIE 291


>gi|92919031|gb|ABE96862.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 289

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 156/292 (53%), Positives = 209/292 (71%), Gaps = 3/292 (1%)

Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELS 200
           R G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELS
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I ++
Sbjct: 60  FLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GD
Sbjct: 118 VAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V 
Sbjct: 178 DVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVN 237

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEG
Sbjct: 238 KIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 289


>gi|262272823|gb|ACY40631.1| GyrB [Leptotrichia sp. HKU24]
 gi|262272827|gb|ACY40633.1| GyrB [Leptotrichia trevisanii]
          Length = 231

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 124/229 (54%), Positives = 169/229 (73%), Gaps = 1/229 (0%)

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+F  QTK KL +SEV  +V + V   L  +LE+HP  A+ I++K+  +   R+AA++
Sbjct: 1   PEPQFEGQTKTKLGNSEVTGIVSNIVGSNLKFYLEDHPKAAEKIIEKMAMSKRAREAAKK 60

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+L  RK  L++ SLPGKLADCS +DP +SE+F+VEG+SAGGSAKQGR R  QAILPLR
Sbjct: 61  ARELVLRKNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLR 120

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE++   K L + EI  +ITA G G G++  D+ KLRYHKI+IMTDADVDGAHIR
Sbjct: 121 GKILNVEKSGVHKALENAEIRAMITAFGAGFGEEM-DLKKLRYHKIVIMTDADVDGAHIR 179

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TL+LTFF+R +  LI+ G++YI +PPLY I  GK+++Y   ++ ++   
Sbjct: 180 TLMLTFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQVT 228


>gi|66271246|gb|AAY43836.1| DNA gyrase subunit B [Vibrio sp. PN 9801]
          Length = 249

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 126/249 (50%), Positives = 178/249 (71%), Gaps = 3/249 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ FS 
Sbjct: 3   VSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSN 61

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P++
Sbjct: 62  TEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPII 120

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+
Sbjct: 121 EKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSF 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + 
Sbjct: 181 MDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEK 240

Query: 364 LSAWLEEHP 372
           LS +L E+P
Sbjct: 241 LSEFLIENP 249


>gi|328497285|dbj|BAK18806.1| DNA gyrase B [Xanthomonas arboricola]
          Length = 266

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 124/266 (46%), Gaps = 7/266 (2%)

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TDADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL
Sbjct: 1   TDADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYL 60

Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623
            + ++     +    +  I+   L   +      ++ I      +D   +   +     +
Sbjct: 61  ASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLD 120

Query: 624 CESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFV 676
            +  Q              + NR      + +  +  + +  ++ ++  R   G +   V
Sbjct: 121 VDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQV 180

Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISM 736
           L   +  S   +  R  S  + +       ++       IT        +    ++G  +
Sbjct: 181 LPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQV 240

Query: 737 QRYKGLGEMNASQLWETTLNPDTRSL 762
           QR+KGLGEMNA QLWETT+NPDTR L
Sbjct: 241 QRFKGLGEMNAEQLWETTVNPDTRRL 266


>gi|146189400|emb|CAL91168.1| DNA gyrase subunit beta [Rhizobium tropici]
          Length = 224

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 143/224 (63%), Positives = 187/224 (83%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WLKL+I+R+G I+EMSF +G+ D PL  TG AG++TGTEV+F+
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKETGDAGDETGTEVSFM 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PSS+ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFVSYL
Sbjct: 61  PSSETFTMIEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVKQEELLYDGGLEAFVSYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+Q P+ I+  +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+AL
Sbjct: 121 DRAKKPLVQKPVSIRSEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYADSSGITKKEKVTLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|76786500|gb|ABA54994.1| DNA gyrase B subunit [Pseudomonas plecoglossicida]
          Length = 241

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 118/243 (48%), Positives = 169/243 (69%), Gaps = 4/243 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F PS++
Sbjct: 1   HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-STGTHIHFKPSAE 59

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
                 F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+  K
Sbjct: 60  TVKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTKK 117

Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            P+          R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR 
Sbjct: 118 TPVNSQVFHFNVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           + SY+E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  
Sbjct: 178 LNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 237

Query: 360 VND 362
           +N 
Sbjct: 238 MNK 240


>gi|50871504|emb|CAF74824.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 145/286 (50%), Positives = 198/286 (69%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+   PL   G     +GTE+ F PS D F 
Sbjct: 1   GVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLTAVGVTE-GSGTEIHFRPSPDTFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV+YL+ +K  +
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERSAKE--ELFKYEGGLSAFVAYLNTNKTAV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 NQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
              +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FGDFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|39837172|emb|CAE84981.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 141/286 (49%), Positives = 202/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++ F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKPSAETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K P+
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTPV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + SY
Sbjct: 118 NQVFHFNIQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK++LVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDELVSSEVKTAVEQEMGRH 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FADFLLENPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|50871500|emb|CAF05627.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 141/286 (49%), Positives = 201/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++ F 
Sbjct: 1   GVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAGVGET-DTSGTQIHFKPSAETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K  +
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTAV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 NQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG +DIA 
Sbjct: 238 FADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGAVDIAG 283


>gi|167995647|gb|ACA13659.1| GyrB [Thalassospira lucentensis]
          Length = 306

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 175/306 (57%), Positives = 229/306 (74%), Gaps = 6/306 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFLPSSDIFS 183
           ALS+ LKLR+ R G  + M F  G    PL V G A         +GTEVTF P  +IF+
Sbjct: 1   ALSTLLKLRVWRNGKEHYMEFSGGDAIKPLEVVGDAPLTEDGKPLSGTEVTFYPDGEIFT 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           + DF+  TL+HRLREL+FLNS V ++L D+RS EP E  + Y+GGI AFV YLDR+K   
Sbjct: 61  MTDFDLPTLEHRLRELAFLNSGVILTLRDERSGEPVEQKLHYEGGIRAFVEYLDRNKARQ 120

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++  I I G +D I++++A++WND YHE  LCFTNNIPQ+DGG H++G R+ALTRQI SY
Sbjct: 121 IEEAIVIVGEKDGITVEVALQWNDSYHETTLCFTNNIPQRDGGAHMAGFRAALTRQINSY 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
            ++S  +KK+K ++ GDD REG + V+S+K+PDP+FSSQTK+KLVSSEVR VVE+ VND 
Sbjct: 181 AQESGIAKKEKVNLSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRPVVENIVNDK 240

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           L+ WLEEHP +A+ IV KV++A+  R+AAR+AR+LTRRKG LDI+SLPGKLADC ERD  
Sbjct: 241 LAQWLEEHPQDARKIVGKVVEAASAREAARKARELTRRKGALDISSLPGKLADCQERDAS 300

Query: 424 KSELFL 429
           K+ELF+
Sbjct: 301 KAELFI 306


>gi|309800098|ref|ZP_07694291.1| DNA topoisomerase 4 subunit B [Streptococcus infantis SK1302]
 gi|308116265|gb|EFO53748.1| DNA topoisomerase 4 subunit B [Streptococcus infantis SK1302]
          Length = 376

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 135/347 (38%), Positives = 199/347 (57%), Gaps = 11/347 (3%)

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
           + F NN+  KDGGTH +GL+SA+T+ +  Y  K    K+  +++ G D REG  +VLSI 
Sbjct: 1   MSFVNNVRTKDGGTHETGLKSAITKVMNDYARKIGLLKEKDKNLEGSDYREGLAAVLSIL 60

Query: 334 MPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391
           +P+   +F  QTK+KL S   R VV+  V D L+ +L E+   A  +++K + A   R+A
Sbjct: 61  VPEEHLQFEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDAREA 120

Query: 392 ARRARDLTRRKGVLDIASL--PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
           AR+ARD +R             GKL     ++P K+EL+LVEGDSAGGSAKQGR R+ QA
Sbjct: 121 ARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQA 180

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           ILPLRGK++N  +A+   +L ++EI T+I  +G G+G D F +    Y KIIIMTDAD D
Sbjct: 181 ILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTD 239

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLIN 565
           GAHI+TLLLTFF+R M  L+  G +YI  PPLY ++    + + + Y   +  LE+    
Sbjct: 240 GAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQ 299

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALK--IDKLIKDFYPNHDK 610
                 ++ +     + +       ++   +  I   I+D      +
Sbjct: 300 FGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERR 346



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               + +    S  +          ++   ++     
Sbjct: 108 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 167

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N    +  ++    ++   +  I       +     N 
Sbjct: 168 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSLEDANY 227

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718
           D ++           +      F +      + +  +      +  +    G K ++   
Sbjct: 228 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 287

Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L+ +     KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+   
Sbjct: 288 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 347

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I++N
Sbjct: 348 NVLMGDKVEPRRKWIEDN 365


>gi|169248038|gb|ACA51802.1| DNA gyrase subunit B [Aliivibrio wodanis]
          Length = 310

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 177/312 (56%), Positives = 231/312 (74%), Gaps = 4/312 (1%)

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G    PL V G+      T++ F PS   F+  +F YD L  RLRELSFLNS V I L D
Sbjct: 1   GEPQAPLAVVGTTDTTG-TKIRFWPSEQTFTNVEFVYDILAKRLRELSFLNSGVSIILQD 59

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYH 270
            R  E +     ++GGI+AFV++L+R+K P+ Q        R    I +++AM+WND Y 
Sbjct: 60  MR-EEDKSDHFMFEGGIQAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQ 118

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN+ C+TNNIPQ+DGG HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+
Sbjct: 119 ENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVV 178

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+
Sbjct: 179 SVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARARE 238

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR++TRRKG LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAI
Sbjct: 239 AARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAI 298

Query: 451 LPLRGKILNVER 462
           LPL+GKILNVE+
Sbjct: 299 LPLKGKILNVEK 310


>gi|281332046|emb|CAZ39997.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 242

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 123/243 (50%), Positives = 160/243 (65%), Gaps = 3/243 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALS  L + + + G  Y+  F NG     L          GT V 
Sbjct: 2   QVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRGTTVR 60

Query: 175 FLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS+  F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV
Sbjct: 61  FWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFV 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R
Sbjct: 120 EHLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFR 179

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
            ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR
Sbjct: 180 GALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVR 239

Query: 354 SVV 356
             V
Sbjct: 240 PAV 242


>gi|66271252|gb|AAY43839.1| DNA gyrase subunit B [Vibrio sp. CRW 9807]
          Length = 276

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 137/277 (49%), Positives = 201/277 (72%), Gaps = 3/277 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +
Sbjct: 1   VVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++ 
Sbjct: 60  FHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEK 118

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++
Sbjct: 119 IFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMD 178

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS
Sbjct: 179 KEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLS 238

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            +L E+P EAK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 239 EFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRK 275


>gi|164456691|dbj|BAF97838.1| gyrase B subunit [Vibrio mediterranei]
          Length = 261

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 134/263 (50%), Positives = 187/263 (71%), Gaps = 3/263 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  + L I R G I+  ++ +G  + PL V G   + TGTE+ F PS + F+  +F+Y
Sbjct: 1   ALSKKVTLTIHRGGQIHTQTYHHGEPEAPLKVIGDT-DKTGTEIRFWPSEETFTNIEFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V I LIDKR  E +     ++GGI+AFV +L+ +K P++Q    
Sbjct: 60  DILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFMFEGGIQAFVEHLNTNKTPIIQKIFH 118

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K  
Sbjct: 119 FDNERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L
Sbjct: 179 FSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVRDA 391
            E+P EAKI+  K++DA+  RDA
Sbjct: 239 VENPGEAKIVCTKIIDAARARDA 261


>gi|284929891|gb|ADC30031.1| DNA gyrase subunit B [Oscillatoria sp. PCC 9631]
          Length = 311

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 126/298 (42%), Positives = 180/298 (60%), Gaps = 7/298 (2%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           E  +T LHAGGKF    YKVSGGLHGVGVSVVNALS WL++ + R+   Y   F  G   
Sbjct: 1   ETGLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDKKEYSQRFERGTPA 60

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID--- 212
             L         TGT V+FLP + IF+   +F+ DT+  RLREL++LN+ V+I+L D   
Sbjct: 61  TELTSKPIKEARTGTSVSFLPDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 120

Query: 213 --KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGY 269
                  PR  T  Y+GGI  +++Y++  K+PL +  I   G R N+ I++A++W  D Y
Sbjct: 121 ELLNRENPRIETYRYEGGIREYIAYMNNDKQPLHEDIIYTCGERSNVQIEVALQWCTDAY 180

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
            + VL F NNI   DGGTHL GL++ LTR + +   K    K+   ++ G++ REG T+V
Sbjct: 181 SDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGDANLGGENIREGLTAV 240

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +S K+PDP F  QTK +L + EVR +V+S V + L+ +LE +P  A  +++K + A  
Sbjct: 241 ISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGVADAVIEKAIQAFK 298


>gi|39837174|emb|CAE84982.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 142/286 (49%), Positives = 202/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PS++ F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLGPVGET-DTSGTQIHFKPSAETFQ 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K P+
Sbjct: 60  NIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTPV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + SY
Sbjct: 118 NQVFHFNIQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRH 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FADFLLENPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|110224859|emb|CAJ29974.1| DNA gyrase subunit B [Pseudomonas sp. OX1]
          Length = 283

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 141/286 (49%), Positives = 201/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F 
Sbjct: 1   GVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSETFK 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  +
Sbjct: 60  NIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y
Sbjct: 118 NQVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|32170802|gb|AAP57678.1| putative DNA gyrase subunit B [Sphingomonas elodea]
          Length = 396

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 210/392 (53%), Gaps = 11/392 (2%)

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           R   ++   +     +      + N IP  DGGTH  GLR AL R + S+ +     K  
Sbjct: 8   RVEWAVAWPLWSEGSFS----WYCNTIPTPDGGTHEQGLRQALVRSLRSFADLVHNKKAK 63

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
              +  DD   G   +LS+ + +P+F SQTK++L S E  ++VE  V D    +L ++  
Sbjct: 64  D--LSPDDVVTGSEVMLSVFIREPQFQSQTKDRLTSPEATALVEKAVRDHFDHYLTDNME 121

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVL-DIASLPGKLADCSERDPKKSELFLVEG 432
             K ++  VL+    R   ++ R++ R+         LPGKL DCS   P+ +ELF+VEG
Sbjct: 122 RGKALLGYVLERMDDRLRRKQEREVKRKSATTGRKLRLPGKLTDCSADSPEGTELFIVEG 181

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492
           DSAGGSAKQ R R+ QAILP+RGKILNV  A   K+L++QEI  LI ALG G  +D  D 
Sbjct: 182 DSAGGSAKQARDRKTQAILPIRGKILNVASATSAKILANQEIADLIQALGCGTRKDC-DA 240

Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552
           ++LRY +IIIMTDADVDGAHI TLL+TFFF++MP L+  G LY+ +PPLY +T G    Y
Sbjct: 241 SQLRYERIIIMTDADVDGAHIATLLMTFFFQEMPDLVRKGHLYLAQPPLYRLTVGSKSLY 300

Query: 553 VKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611
            +D+    +        +++E       G ++ N L+    D      L       +++ 
Sbjct: 301 ARDDAHRIEIEKTAFKGKKVEVSRFKGLGEMNPNQLKETTMDPKTRGLLRVTLPQEYEER 360

Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLN 643
              + ++  +    ++     +   + A RL+
Sbjct: 361 AGVKDLVDRLM--GNNPAHRFAFIQENAARLD 390



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 8/84 (9%)

Query: 725 TIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK----ITDASQADDLFS 778
            I     KG  + + R+KGLGEMN +QL ETT++P TR LLRV       + +   DL  
Sbjct: 309 EIEKTAFKGKKVEVSRFKGLGEMNPNQLKETTMDPKTRGLLRVTLPQEYEERAGVKDLVD 368

Query: 779 RLMGDEVEPRREFIQENSLPSALD 802
           RLMG+    R  FIQEN+  + LD
Sbjct: 369 RLMGNNPAHRFAFIQENA--ARLD 390


>gi|110224845|emb|CAJ29739.1| DNA gyrase subunit B [Pseudomonas brassicacearum]
          Length = 283

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 143/286 (50%), Positives = 202/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TGT++ F  SS+ F 
Sbjct: 1   GVSVVNALSEQLVLTVRRSGKIWEQTYIHGVPQAPMAIVGDSE-STGTQIHFKASSETFK 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+
Sbjct: 60  NIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y
Sbjct: 118 NQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|89276710|gb|ABD66576.1| gyrase B [Leifsonia shinshuensis]
          Length = 326

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 138/324 (42%), Positives = 203/324 (62%), Gaps = 21/324 (6%)

Query: 196 LRELSFLNSSVQISLIDKRSPE----------------PREITMFYKGGIEAFVSYLDRH 239
           +++++FLN  ++ISL D+R+PE                PR     Y+ G+  +V YL+  
Sbjct: 1   VQQMAFLNKGLRISLRDERAPEVEPVEGEVEEEAEVFAPRSDVFLYERGLTDYVHYLNAA 60

Query: 240 KKPL--MQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           KK        I  +       I++++AM+W   Y+E+V  + N I   +GGTH  G R+A
Sbjct: 61  KKAEVVHDEIISFESEDTDRKIALEVAMQWTTSYNESVFTYANTINTHEGGTHEEGFRAA 120

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LT  +  Y  +    K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL ++E ++ 
Sbjct: 121 LTTLVNRYAREKNILKEKDDNLSGEDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAF 180

Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415
           V+  V D L  W + +P +AK I++K L A+  R AAR+AR+  RRKG+L+   +PGKL 
Sbjct: 181 VQKIVGDQLGDWFDRNPNQAKEIIRKALSAATARIAARKARETARRKGLLESGGMPGKLK 240

Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475
           DC+ +DP  SE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L++ E+ 
Sbjct: 241 DCASKDPTLSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALANNEVQ 300

Query: 476 TLITALGTGIGQDSFDINKLRYHK 499
            +ITA G GIG+D F+  K RYHK
Sbjct: 301 AMITAFGAGIGED-FNPEKARYHK 323


>gi|146189384|emb|CAL91160.1| DNA gyrase subunit beta [Rhizobium gallicum]
          Length = 224

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 143/224 (63%), Positives = 186/224 (83%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WLKL+I+R+G I+EMSF +G+ D PL VTG AG+DTGTEV+F+
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKVTGEAGSDTGTEVSFM 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS+  F++ DF+Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+EAFVSYL
Sbjct: 61  PSTGTFTMTDFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEEMRYDGGLEAFVSYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+AL
Sbjct: 121 DRAKKPLVDKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+ SY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVVSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|291196151|emb|CBG14442.1| DNA gyrase subunit B [Pseudomonas cremoricolorata]
          Length = 267

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 124/261 (47%), Positives = 182/261 (69%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT + F PS++ F  
Sbjct: 1   VSVVNALSEKLILTVRRSGKIWEQTYVHGVPQEPMAIVGESE-TTGTHIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                    R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + +Y
Sbjct: 118 SQVFHFSVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK+K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N  
Sbjct: 178 IEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            S +L E+P EAK +V K++D
Sbjct: 238 FSDFLLENPNEAKAVVGKMID 258


>gi|281332052|emb|CAZ40000.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 247

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 123/243 (50%), Positives = 160/243 (65%), Gaps = 3/243 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L + + + G  Y+  F NG     L          GT V F 
Sbjct: 1   SGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRGTTVRFW 59

Query: 177 PSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS+  F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +
Sbjct: 60  PSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R A
Sbjct: 119 LAQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 179 LTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 238

Query: 356 VES 358
           VE+
Sbjct: 239 VEN 241


>gi|146189364|emb|CAL91150.1| DNA gyrase subunit beta [Sinorhizobium kostiense]
 gi|146189366|emb|CAL91151.1| DNA gyrase subunit beta [Sinorhizobium kostiense]
 gi|146189372|emb|CAL91154.1| DNA gyrase subunit beta [Sinorhizobium kostiense]
          Length = 224

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 146/224 (65%), Positives = 184/224 (82%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ LKL+I+R G I+EMSF +G+ D+PL VTG AG++TGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSTSLKLKIRRGGKIHEMSFTHGVADSPLTVTGDAGSNTGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F+Y TL+HRLREL+FLNS V+I L DKR  + R   + Y GG+EAFV+YL
Sbjct: 61  PSEQTFSNVEFDYATLEHRLRELAFLNSGVRIVLTDKRHSDIRREELMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+AL
Sbjct: 121 DRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|291196199|emb|CBG14491.1| DNA gyrase subunit B [Pseudomonas monteilii]
          Length = 267

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 125/261 (47%), Positives = 182/261 (69%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F PS++ F  
Sbjct: 1   VSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                    RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY
Sbjct: 118 SQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N  
Sbjct: 178 IEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            + +L E+P EAK +V K++D
Sbjct: 238 FADFLLENPNEAKAVVGKMID 258


>gi|110224853|emb|CAJ29743.1| DNA gyrase subunit B [Pseudomonas thivervalensis]
          Length = 283

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 141/286 (49%), Positives = 201/286 (70%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F 
Sbjct: 1   GVSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-STGTQIHFKASSETFK 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  +
Sbjct: 60  NIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y
Sbjct: 118 NQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|291196230|emb|CBG14517.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
          Length = 267

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 124/261 (47%), Positives = 182/261 (69%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F PS++ F  
Sbjct: 1   VSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-STGTHIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                    R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY
Sbjct: 118 SQVFHFNVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N  
Sbjct: 178 IEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            + +L E+P EAK +V K++D
Sbjct: 238 FADFLLENPNEAKAVVGKMID 258


>gi|50871662|emb|CAG15373.1| DNA gyrase subunit B [Pseudomonas balearica]
          Length = 284

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 143/286 (50%), Positives = 201/286 (70%), Gaps = 4/286 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  + L I+REG ++E  + +G+   PL   G     TGTE+ F PS++ F  
Sbjct: 2   VSVVNALSEEMILTIRREGKVWEQIYRHGVPQAPLTAMGETE-GTGTEIHFKPSAETFKN 60

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFVSYL+ +K  + 
Sbjct: 61  IHFSWDILAKRLRELSFLNSGVGILLRDERTAKE--ELFKYEGGLSAFVSYLNTNKSAIN 118

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 119 QVFHFNVQREEDGVGVEIALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNY 178

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 179 IEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKH 238

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            + +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 239 FADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 284


>gi|183987588|gb|ACC65784.1| topoisomerase II [Pleurotus cystidiosus]
          Length = 692

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 115/558 (20%), Positives = 217/558 (38%), Gaps = 31/558 (5%)

Query: 120 LHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFL 176
            HG G  + N  S    +    K     Y  ++   +       +T ++  +  T VTF 
Sbjct: 1   RHGFGAKLANIYSLEFMIETADKTSEKKYSQTWTKNMSQVGKAKITKNSRGEEYTRVTFK 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F +Q  + DT   L+ R+ +++     V++ L D+R                A  
Sbjct: 61  PDLARFGMQYIDADTASLLRKRVYDMAGTVKDVKVYLNDERLKIKNFKQYVEMYLDAAAA 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
              +         P  I   + +   ++A   +DG  ++V  F N+I    GGTH++ + 
Sbjct: 121 DAKENSGGAAQAKPTVI-YEQISPRWEVAFATSDGTPQHV-SFANSISTIKGGTHVTYIA 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             + + + + + K         +V     R      ++  + +P F SQTKE L     +
Sbjct: 179 DQIAKNLIAAITKKN----KGATVKPAQIRNHMWIFVNSLIENPTFDSQTKETLTLPASK 234

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
              +  +++     +++       I+++VL+ +  +   +  +    ++  L   +    
Sbjct: 235 FGSKPSLSEEFMKKVQKS-----SIIEQVLNWAKFKADQQIKKTDGSKRNRLTGMAKLSD 289

Query: 414 LADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
             +   +  +K  L L EGDSA      G A  GR   N  + PLRGK LNV  A+ D++
Sbjct: 290 ANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRD--NFGVFPLRGKFLNVREAKHDQI 347

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + ++EI  +   +G    ++  +I+ LRY +++IMTD D DG+HI+ LL+ F     PSL
Sbjct: 348 MKNEEIQNIKKIMGLQHNKEYANISSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSL 407

Query: 529 IHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +      +    P+  +T+G   +        E +L     S++      +         
Sbjct: 408 LKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDSKK-----WTAKYYKGLGT 462

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            +  D      ++ K   P       E+A+I   F+ +   +       +          
Sbjct: 463 SSDADAREYFSQMGKHMIPFATMEDEERALIDLAFSKKKADDR-KEWLRQFKPGTYLDHN 521

Query: 648 KSEKSWHGSINNSDILVK 665
             E  +   IN   IL  
Sbjct: 522 IDEIPFTDFINKELILFS 539


>gi|300490570|gb|ADK22869.1| DNA gyrase B subunit [Vibrio communis]
          Length = 258

 Score =  213 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 184/260 (70%), Gaps = 3/260 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +
Sbjct: 1   VVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++ 
Sbjct: 60  FHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEK 118

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++
Sbjct: 119 IFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMD 178

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS
Sbjct: 179 KEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLS 238

Query: 366 AWLEEHPLEAKIIVKKVLDA 385
            +L E+P   K++  K++D+
Sbjct: 239 EFLIENPTVTKMVCSKIIDS 258


>gi|291196221|emb|CBG14513.1| DNA gyrase subunit B [Pseudomonas parafulva]
          Length = 267

 Score =  213 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 126/261 (48%), Positives = 182/261 (69%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT + F PS+D F  
Sbjct: 1   VSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMEIVGDSE-TTGTHIHFKPSADTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                    R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY
Sbjct: 118 SQVFHFSVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK+K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N  
Sbjct: 178 IEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            S +L E+P EAK +V K++D
Sbjct: 238 FSDFLLENPNEAKAVVGKMID 258


>gi|148470294|gb|ABQ66094.1| gyrase b [uncultured bacterium]
          Length = 366

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 144/324 (44%), Positives = 182/324 (56%), Gaps = 41/324 (12%)

Query: 97  EVIMTRLHAGGKFNQKSY-KVSGGLH-GVGVSVVNALSSWLKLRI-KREGNIYE-MSFIN 152
           EVIMT LHAGGKF+  SY +VSGGL  GVGVSVVNALSS L L I  R G ++E   + +
Sbjct: 1   EVIMTVLHAGGKFDDNSYTRVSGGLQDGVGVSVVNALSSKLHLIILHRAGQVHEKQEYHH 60

Query: 153 GILDNPLVV-TGSAGNDTGTEVTFLPSSDIF----SVQDFNYDTLQHRL-RELSFLNSSV 206
           G    PL V  G   +   T   F PS   F        FN + L  RL RELSFLN+ V
Sbjct: 61  GDTQYPLRVLIGETDSSGTTVNRFWPSGLTFSHGECRTIFNVEILARRLLRELSFLNAGV 120

Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ--------------- 251
           +I L D+R      +   Y+GG+  FV Y     K  +                      
Sbjct: 121 RIVLRDERIN-LEHVYAXYEGGLSEFVKYFINEGKTHLNEIFHFXTADTENGIGVKYINE 179

Query: 252 -------------GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR--SAL 296
                         + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R   AL
Sbjct: 180 GKNHLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRALQAL 239

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR +  Y+E     KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+  V
Sbjct: 240 TRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAV 299

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVK 380
           E  +N   SA+L E+P  AK I  
Sbjct: 300 EQAMNKEFSAYLLENPQAAKSIAG 323


>gi|262272831|gb|ACY40635.1| GyrB [Leptotrichia shahii]
          Length = 230

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 127/229 (55%), Positives = 169/229 (73%), Gaps = 1/229 (0%)

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+F  QTK KL +SEV  +V + V   L  +LE+HP  A+ I++K++ +   R+AA++
Sbjct: 1   PEPQFEGQTKTKLGNSEVTGIVSNIVGGNLKFYLEDHPKAAEKIIEKMVMSKRAREAAKK 60

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+L  RK  L++ SLPGKLADCS +DP +SE+F+VEG+SAGGSAKQGR R  QAILPLR
Sbjct: 61  ARELVLRKNTLEVGSLPGKLADCSSKDPSESEIFIVEGNSAGGSAKQGRDRRFQAILPLR 120

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE++   K L + EI  +ITA G G G D  DI KLRYHKI+IMTDADVDGAHIR
Sbjct: 121 GKILNVEKSGVHKALENAEIRAMITAFGAGFGDDM-DIKKLRYHKIVIMTDADVDGAHIR 179

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TL+LTFF+R +  LI+ G++YI +PPLY I  GK+++Y   ++ L+   
Sbjct: 180 TLMLTFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQLKQVT 228


>gi|146431142|gb|ABQ40554.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 222

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 158/224 (70%), Gaps = 3/224 (1%)

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            SYKVSGGLHGVGVSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           ++ F PS++ FS  +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+A
Sbjct: 60  QIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADK-SDHFMFEGGIQA 118

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           FV +L+ +K P+++        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+
Sbjct: 119 FVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLA 178

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334
           G R+ALTR + S+++K   SKK K +  GDD REG T+V+S+K+
Sbjct: 179 GFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKV 222


>gi|75765928|pdb|1ZXM|A Chain A, Human Topo Iia AtpaseAMP-Pnp
 gi|75765929|pdb|1ZXM|B Chain B, Human Topo Iia AtpaseAMP-Pnp
 gi|75765930|pdb|1ZXN|A Chain A, Human Dna Topoisomerase Iia AtpaseADP
 gi|75765931|pdb|1ZXN|B Chain B, Human Dna Topoisomerase Iia AtpaseADP
 gi|75765932|pdb|1ZXN|C Chain C, Human Dna Topoisomerase Iia AtpaseADP
 gi|75765933|pdb|1ZXN|D Chain D, Human Dna Topoisomerase Iia AtpaseADP
          Length = 400

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/401 (17%), Positives = 150/401 (37%), Gaps = 42/401 (10%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 6   YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAA 65

Query: 54  DESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ + +  ++ +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 66  DNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD 125

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++++ +     +       + 
Sbjct: 126 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGED 185

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++     V++ L   +            
Sbjct: 186 YTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNK---------LPV 236

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     + +++   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 237 KGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQI-SFVNSIATSKGG 295

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            H+  +   +  ++   V+K     K   +V     +      ++  + +P F SQTKE 
Sbjct: 296 RHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKEN 352

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
           +            +++             + I+  V   + 
Sbjct: 353 MTLQPKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQ 392


>gi|262272833|gb|ACY40636.1| GyrB [Leptotrichia wadei]
          Length = 230

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 127/229 (55%), Positives = 169/229 (73%), Gaps = 1/229 (0%)

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+F  QTK KL +SEV  +V + V   L  +LE+HP  A+ I++K++ +   R+AA++
Sbjct: 1   PEPQFEGQTKTKLGNSEVTGIVSNIVGGNLKFYLEDHPKAAEKIIEKMVMSKRAREAAKK 60

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+L  RK  L++ SLPGKLADCS +DP +SE+F+VEG+SAGGSAKQGR R  QAILPLR
Sbjct: 61  ARELVLRKNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLR 120

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE++   K L + EI  +ITA G G G D  DI KLRYHKI+IMTDADVDGAHIR
Sbjct: 121 GKILNVEKSGVHKALENAEIRAMITAFGAGFGDDM-DIKKLRYHKIVIMTDADVDGAHIR 179

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TL+LTFF+R +  LI+ G++YI +PPLY I  GK+++Y   ++ L+   
Sbjct: 180 TLMLTFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQLKQVT 228


>gi|164456633|dbj|BAF97809.1| gyrase B subunit [Enterovibrio norvegicus]
          Length = 259

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 129/261 (49%), Positives = 185/261 (70%), Gaps = 3/261 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L+L I R G +++  +++G+ + PL   G   ++TGT + F PS + F+   F+Y
Sbjct: 1   ALSEKLELTIWRHGQVHQQVYVHGVPEAPLGPIGDT-DETGTRIRFWPSGETFTDLLFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V I L+D+R  E +     Y+GGI AFV +L+R+K P+  S   
Sbjct: 60  DILAKRLRELSFLNSGVSIRLVDER-EEDKSDHFTYEGGIRAFVEHLNRNKNPIHPSVFH 118

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
            +  R++ ++++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY+EK  
Sbjct: 119 FEHEREDGVTVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSYMEKEG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKK   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ LS +L
Sbjct: 179 YSKKANAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLSEFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVR 389
            E P +AKI+  K++DA+  R
Sbjct: 239 IESPQDAKIVCSKIIDAARAR 259


>gi|110224847|emb|CAJ29740.1| DNA gyrase subunit B [Pseudomonas frederiksbergensis]
          Length = 283

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 143/286 (50%), Positives = 200/286 (69%), Gaps = 3/286 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TGT++ F PS   F 
Sbjct: 1   GVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTGTQIHFKPSDLTFK 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+
Sbjct: 60  NIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPV 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
            Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y
Sbjct: 118 NQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 FSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAG 283


>gi|183987564|gb|ACC65772.1| topoisomerase II [Pleurotus abalonus]
          Length = 692

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 112/558 (20%), Positives = 214/558 (38%), Gaps = 31/558 (5%)

Query: 120 LHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFL 176
            HG G  + N  S    +    K     Y  ++   +       +T ++  +  T VTF 
Sbjct: 1   RHGYGAKLANIYSLEFMIETADKTSEKKYSQTWTKNMSQVGKAKITKNSRGEEYTRVTFK 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F +Q  + DT   L+ R+ +++     V++ L D+R                A  
Sbjct: 61  PDLPRFGMQYIDADTASLLRKRVYDMAGTAKDVKVYLNDERLKIKNFKQCVEMYLDAAAA 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
              +         P  I   + +   ++A   +DG  ++V  F N+I    GGTH++ + 
Sbjct: 121 DAKENSGGAAQAKPTVI-YEQISPRWEVAFATSDGTPQHV-SFANSISTIKGGTHVTYIA 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             + + + + + K         +V     R      ++  + +P F SQTKE L     +
Sbjct: 179 DQIAKNLIAAITKKN----KGATVKPAQIRNHMWIFVNSLIENPTFDSQTKETLTLPASK 234

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
              +  +++     +++       I+++VL+ +  +   +  +    ++  L   +    
Sbjct: 235 FGSKPSLSEEFMKKVQKS-----SIIEQVLNWAKFKADQQIKKTDGSKRNRLTGTAKLSD 289

Query: 414 LADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
             +   +  +K  L L EGDSA      G A  GR   N  + PLRGK+LNV  A+ D++
Sbjct: 290 ANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRD--NFGVFPLRGKLLNVREAKHDQI 347

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + ++EI  +   +G    ++  +I  LRY +++IMTD D DG+HI+ LL+ F     PSL
Sbjct: 348 MKNEEIQNIKKIMGLQHNKEYANIPSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFFPSL 407

Query: 529 IHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +      +    P+  +T+G   +        E +     L    +    +         
Sbjct: 408 LKIPEFLVEFVTPIVRVTKGNQHRNFFTIPEYERW-----LEATPDSKKWTAKYYKGLGT 462

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            +  D      ++ K   P       ++ +I   F+ +   +       +          
Sbjct: 463 SSDADAREYFGRMSKHMIPFATMEEGDRDLIDLAFSKKKADDR-KDWLRQFKPGTYLDHN 521

Query: 648 KSEKSWHGSINNSDILVK 665
             E  +   IN   IL  
Sbjct: 522 IEEIPYSDFINKELILFS 539


>gi|331029389|gb|AEC49844.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6002]
 gi|331029395|gb|AEC49847.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6144]
          Length = 228

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 131/230 (56%), Positives = 166/230 (72%), Gaps = 2/230 (0%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEV
Sbjct: 1   YKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGRRGTEV 60

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           TFL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV
Sbjct: 61  TFLASTETFKNVEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGGVEEFV 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YLDR+KK L+ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R
Sbjct: 121 KYLDRNKKALVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFR 180

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343
            ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQT
Sbjct: 181 GALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 228


>gi|290879066|emb|CBK39757.1| DNA gyrase B subunit [Pseudomonas sp. a399]
          Length = 341

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 177/318 (55%), Positives = 237/318 (74%), Gaps = 3/318 (0%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + + G +   TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS + 
Sbjct: 1   MAIVGDSE-TTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE 59

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y+GG+ AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTN
Sbjct: 60  --ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTN 117

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+
Sbjct: 118 NIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPK 177

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++
Sbjct: 178 FSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREM 237

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKG LDIA LPGKLADC E+DP  SEL+LV GDSAGGSAKQGR+R+ QAILPL+G+IL
Sbjct: 238 TRRKGALDIAGLPGKLADCQEKDPALSELYLVVGDSAGGSAKQGRNRKTQAILPLKGEIL 297

Query: 459 NVERARFDKMLSSQEIGT 476
           NVE+ARFDK +SSQE+GT
Sbjct: 298 NVEKARFDKTISSQEVGT 315


>gi|291196213|emb|CBG14505.1| DNA gyrase subunit B [Pseudomonas pachastrellae]
          Length = 266

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 126/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L I+R G ++E ++++G+   PL   G   + TGT++ F PS++ FS 
Sbjct: 1   VSVVNALSEKLILTIRRHGKVWEQTYVHGVPQAPLAEVGDT-DSTGTQIHFKPSAETFSS 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I+L D+R+ +       Y+GG+ AFV YL+++K  + 
Sbjct: 60  ITFSWDILAKRLRELSFLNSGVGINLRDERTGK--HELFRYEGGLRAFVEYLNQNKTSIN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                     D I +++AM+WND ++E++LCFTNNIPQ+DGGTHL+G RSALTR + SY+
Sbjct: 118 SVFHFNLQREDGIGVEVAMQWNDSFNESILCFTNNIPQRDGGTHLAGFRSALTRSLNSYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+    KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N   
Sbjct: 178 EQEGLLKKLKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
             +L E P EAK +V K++D
Sbjct: 238 GDYLLEKPGEAKAVVGKMID 257


>gi|164456655|dbj|BAF97820.1| gyrase B subunit [Vibrio coralliilyticus]
          Length = 257

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 131/259 (50%), Positives = 183/259 (70%), Gaps = 3/259 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  + L I R G I+  ++ +G    PL V G   + TGTE+ F PS + FS  +F+
Sbjct: 1   NALSKQVTLTIHRGGQIHTQTYHHGEPQAPLSVIGET-DKTGTEIRFWPSEETFSNTEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I L+D+R  E +     Y+GGI+AFV +L+ +K P+++   
Sbjct: 60  YDILAKRLRELSFLNSGVSIKLVDER-EEDKSDHFMYEGGIQAFVEHLNTNKTPIIEKVF 118

Query: 249 RIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K 
Sbjct: 119 HFNAEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKE 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +
Sbjct: 179 GFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESVMGEKLSEF 238

Query: 368 LEEHPLEAKIIVKKVLDAS 386
           L EHP EAK +  K++DA+
Sbjct: 239 LVEHPTEAKAVCSKIIDAA 257


>gi|223674622|gb|ACN13007.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 217

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 110/220 (50%), Positives = 151/220 (68%), Gaps = 3/220 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-D 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+G
Sbjct: 60  TTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+ AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGT
Sbjct: 118 GLRAFVEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           HL G RSALTR + +Y+E+   +KK K +  GDD REG T
Sbjct: 178 HLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 217


>gi|290879062|emb|CBK39755.1| DNA gyrase B subunit [Pseudomonas sp. a393]
 gi|290879064|emb|CBK39756.1| DNA gyrase B subunit [Pseudomonas sp. a398]
          Length = 343

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 177/318 (55%), Positives = 237/318 (74%), Gaps = 3/318 (0%)

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
           + + G +   TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS + 
Sbjct: 1   MAIVGDSE-TTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE 59

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
                 Y+GG+ AFV YL+ +K  + Q         D I +++A++WND ++EN+LCFTN
Sbjct: 60  --ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTN 117

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           NIPQ+DGGTHL G RSALTR + +Y+E    +KK K +  GDD REG T+++S+K+PDP+
Sbjct: 118 NIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPK 177

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK++V K++DA+  R+AAR+AR++
Sbjct: 178 FSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREM 237

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           TRRKG LDIA LPGKLADC E+DP  SEL+LV GDSAGGSAKQGR+R+ QAILPL+G+IL
Sbjct: 238 TRRKGALDIAGLPGKLADCQEKDPALSELYLVVGDSAGGSAKQGRNRKTQAILPLKGEIL 297

Query: 459 NVERARFDKMLSSQEIGT 476
           NVE+ARFDK +SSQE+GT
Sbjct: 298 NVEKARFDKTISSQEVGT 315


>gi|211927043|dbj|BAG82774.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 446

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 136/280 (48%), Positives = 188/280 (67%), Gaps = 1/280 (0%)

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y  G+  +V YL++ K  +  + +  +   D+  +++AM+WN GY E+V  F N I  
Sbjct: 168 YHYPDGLIDYVKYLNKSKSEIHPTIVGFEAKGDDHEVEIAMQWNSGYKESVHTFANTINT 227

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y  +    K+   ++ GDDCREG  +V+S ++ DP+F  Q
Sbjct: 228 HEGGTHEEGFRAALTTLMNRYAREHKLLKEKDPNLTGDDCREGLAAVVSARVGDPQFEGQ 287

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++E++  V+  VN+ L+ W + +P EAK IV K + +S  R AAR+ARDL RRK
Sbjct: 288 TKTKLGNTELKGFVQRAVNEHLAFWFDANPAEAKAIVNKAVASSHARVAARKARDLVRRK 347

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
              D+  LPGKLADC  +DP  +ELF+VEGDSAGGSAKQGR    QAILPLRGKILNVE+
Sbjct: 348 SATDMGGLPGKLADCRTKDPNAAELFIVEGDSAGGSAKQGRDSMYQAILPLRGKILNVEK 407

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           AR D++L + E+  +ITALGTGI ++ FDI KLRYHKI++
Sbjct: 408 ARLDRVLKNAEVQAIITALGTGINEE-FDIEKLRYHKIVL 446


>gi|66271244|gb|AAY43835.1| DNA gyrase subunit B [Vibrio sp. BS 9904]
          Length = 275

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 136/276 (49%), Positives = 200/276 (72%), Gaps = 3/276 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +F
Sbjct: 1   VNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++  
Sbjct: 60  HYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKI 118

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K
Sbjct: 119 FHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS 
Sbjct: 179 EGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLSE 238

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           +L E+P EAK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 239 FLIENPTEAKMVCSKIIDAARAREAARKAREMTRRK 274


>gi|196019940|ref|XP_002119073.1| hypothetical protein TRIADDRAFT_63040 [Trichoplax adhaerens]
 gi|190577077|gb|EDV18441.1| hypothetical protein TRIADDRAFT_63040 [Trichoplax adhaerens]
          Length = 303

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 148/305 (48%), Positives = 202/305 (66%), Gaps = 4/305 (1%)

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           +P +AK I+ ++ ++++ R+AAR+ARDL+R++    I++LPGKLA+C E+DP KSELFLV
Sbjct: 2   NPKDAKTIIGRMAESAIAREAARKARDLSRKQIGNQISTLPGKLANCQEKDPAKSELFLV 61

Query: 431 EGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF 490
           EGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKML+S EIGTLITALG  +    F
Sbjct: 62  EGDSAGGSAKQGRDRKIQAILPLKGKILNVERARFDKMLNSAEIGTLITALGVVLEDKEF 121

Query: 491 DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL 550
           D+ KLRYHKIIIMTDADVDGAHIRTLLLTFFFR MP LI  G+LYI +PPLY + RG+S 
Sbjct: 122 DLTKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMPGLIEKGYLYIAQPPLYKVKRGQSD 181

Query: 551 QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610
            Y+KDE +L +YL +  L         S   I ++  +  ++  ++   ++K++      
Sbjct: 182 TYLKDELALRNYLKSIILKNCTVKI--SGREIDEDKTKALLNTLIRFSNIVKNYTNQVPA 239

Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG 670
             IE+ +  G FN E         A  L  R N + +  +  W        + + ++ + 
Sbjct: 240 YIIEELLFLGFFNNEPSSNKIN--AENLIERFNKLFKNKQIKWEVINVEEGLEIHKVEKS 297

Query: 671 VQEQF 675
           V+E +
Sbjct: 298 VKEVY 302


>gi|190148856|gb|ACE63403.1| DNA gyrase B subunit [Pseudonocardia petroleophila]
          Length = 336

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 143/336 (42%), Positives = 207/336 (61%), Gaps = 16/336 (4%)

Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------ 216
           G     TG+ +T+    DIF    +N +T++ RL+E++FLN  + + L D+R+       
Sbjct: 1   GEETTRTGSSITYWADPDIFETTTYNLETIRRRLQEMAFLNKGLTMVLRDERNGTANEGA 60

Query: 217 ----------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
                     +  E    Y  G+E FV++L++ K P+ +  +   G  +  ++++AM+WN
Sbjct: 61  EEPDAEGYVAKTVENVYCYPNGLEDFVAHLNKSKDPIHKKLVSFSGEAEGHALEVAMQWN 120

Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326
            GY E+V  F N I   +GGTH  G RSALT  +  Y       K+   ++ GDD REG 
Sbjct: 121 SGYTESVYTFANTINTHEGGTHEEGFRSALTSTVNRYARTQKLLKEKDPALSGDDIREGL 180

Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
            +++S+K+ +P+F  QTK KL ++EV+S V+   N+ LS W E +P EAKIIV K + ++
Sbjct: 181 AAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLSDWFERNPAEAKIIVNKSVQSA 240

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
             R AAR+AR+L RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK GR   
Sbjct: 241 QARAAARKARELVRRKSATDIGGLPGKLADCRSTDPVKSEVYIVEGDSAGGSAKSGRDSM 300

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            QAILP+RGKI+NVE+AR D++L + E+  +ITALG
Sbjct: 301 FQAILPIRGKIINVEKARIDRVLKNTEVQAIITALG 336


>gi|183987568|gb|ACC65774.1| topoisomerase II [Sarcomyxa serotina]
          Length = 696

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/561 (19%), Positives = 207/561 (36%), Gaps = 33/561 (5%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREG--NIYEMSFINGI-LDNPLVVTGSAGNDTGTEVTFL 176
            HG G  + N  S    +          Y+ ++ N +       +T +A  +  T +TF 
Sbjct: 1   RHGYGAKLTNIYSHEFTVETADAKTAQKYKQTWSNNMSKVGKPKITKNARGEEWTRITFR 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F +   + DT   L+ R+ +++    ++++ L D R                A  
Sbjct: 61  PDLKRFGMDSIDEDTAGLLRKRVYDMAGTVKNIKVFLNDDRLKVKNFKQYIEMYISSAAA 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
              D         P  I   + +   ++    +DG  +++  F N+I    GGTH++ + 
Sbjct: 121 EATDNAGGAAQPKPTVI-YEQISNRWEVGFAVSDGTFQHI-SFANSIATTKGGTHVTVVS 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             + + + + + K   +   K +      +      ++  + +P F SQTKE +     +
Sbjct: 179 DQIAKNLITAIAKKNKAATVKAAQ----IKNHMWIFVNALIENPTFDSQTKETMTLPSSK 234

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
              +  + +     + + P     I+  VL+ +  +   +  +    ++  L        
Sbjct: 235 FGTKPVLTENFMKKVMKSP-----IIDHVLNWAKFKADQQIKKTDGTKRSRLTGLPKLAD 289

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLS 470
             +   ++  K  L L EGDSA   A  G     R+N  + PLRGKILNV  A  D+++ 
Sbjct: 290 ANNAGTKNASKCTLILTEGDSAKALAVAGLGVVGRDNFGVFPLRGKILNVREASHDQIMK 349

Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530
           +QEI  + T +G    +    ++ LRY +++IMTD D DG+HI+ LL+ +     PSL+ 
Sbjct: 350 NQEIQNIKTIMGLQHNKSYTGVSSLRYGRLMIMTDQDHDGSHIKGLLINYLDHFFPSLLK 409

Query: 531 NGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589
                +    P+  + +G       +++  +D+       +  +   D     SK     
Sbjct: 410 LPDFLVEFVTPIVRVWKGT-----GNKKQTKDFFTIPEFEQWQQQTPDFHKWESKYFKGL 464

Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN-----RLNF 644
                            +       Q     +      ++        L        L+ 
Sbjct: 465 GTSGDSDARDYFSHMSKHMIPFAPTQEGDKELIELAFSKKKADERKEWLRQLKPGTCLDH 524

Query: 645 IAEKSEKSWHGSINNSDILVK 665
             E  E  +   IN   IL  
Sbjct: 525 RLE--EIPYSEFINKELILFS 543


>gi|291196203|emb|CBG14495.1| DNA gyrase subunit B [Pseudomonas mosselii]
          Length = 267

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 125/261 (47%), Positives = 182/261 (69%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT + F PS++ F  
Sbjct: 1   VSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
                    RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR + SY
Sbjct: 118 SQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK+K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +N  
Sbjct: 178 IEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            + +L E+P EAK +V K++D
Sbjct: 238 FADFLLENPNEAKAVVGKMID 258


>gi|210062272|gb|ACJ06185.1| GyrB [Aeromonas caviae]
          Length = 291

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 156/294 (53%), Positives = 207/294 (70%), Gaps = 3/294 (1%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
            L L I+R G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L 
Sbjct: 1   KLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILA 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLRELSFLNS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          
Sbjct: 60  KRLRELSFLNSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTE 117

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK 
Sbjct: 118 QDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKA 177

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P 
Sbjct: 178 KSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPG 237

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           +AKI+V K++DA+  R+AAR+AR+LTRRKG LDIA LPGKLAD  E+DP  SEL
Sbjct: 238 DAKIVVNKIIDAARAREAARKARELTRRKGALDIAXLPGKLADWQEKDPALSEL 291


>gi|331029391|gb|AEC49845.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6028]
          Length = 227

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 127/229 (55%), Positives = 164/229 (71%), Gaps = 2/229 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTE 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTFL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E F
Sbjct: 61  VTFLASTETFKNVEYDFATLEHRLRELAFLNSGVHIVLSDMRHAVEKREEMHYSGGVEEF 120

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR+K  ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G 
Sbjct: 121 VKYLDRNKTAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGF 180

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           R ALTRQ+  Y + +  +KK+K ++ GDDCREG T+VLS+K+PDP+FSS
Sbjct: 181 RGALTRQVNGYADAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 227


>gi|37683435|gb|AAQ98791.1| gyrase B [Cardinium endosymbiont of Encarsia pergandiella]
          Length = 308

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 144/309 (46%), Positives = 206/309 (66%), Gaps = 5/309 (1%)

Query: 139 IKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRE 198
           + R G IY+  +  G+    +   G+     GT V F P S IF+   +N  T+ +RL+E
Sbjct: 1   VYRNGKIYKQEYAQGVPCYSVKEIGTTA-LRGTTVHFRPDSSIFTTTVYNLHTIINRLQE 59

Query: 199 LSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           L++LN  +++ L D+R  +    P + T + +GG+  FVS+L+R K  +M +PI I+G +
Sbjct: 60  LAYLNVGLKMQLEDRREQDEQGNPFQQTFYSEGGLLEFVSHLERTKTSIMPTPILIEGEK 119

Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           +NI + +AM +N GY E V+ + NNI   +GG H++G + ALTR + +Y +KS   +K K
Sbjct: 120 NNIGVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFKRALTRTLKNYADKSGLLEKAK 179

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
             +IGDD REG T+V+S+K+ +P+F  QTK KL ++EV+S VES V + L  +LEEHP E
Sbjct: 180 IEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQSAVESCVAEVLHYYLEEHPKE 239

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434
           AK+IV KV+ A+  R AAR+AR++ +RK VL   SLPGKLADCSERDP   ELFLVEGDS
Sbjct: 240 AKLIVNKVIVAAQARQAARKAREMVQRKNVLMSNSLPGKLADCSERDPTLCELFLVEGDS 299

Query: 435 AGGSAKQGR 443
           AGG+AK GR
Sbjct: 300 AGGTAKMGR 308


>gi|285310174|emb|CBH41068.1| DNA gyrase beta subunit [Pseudomonas nitroreducens]
          Length = 278

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 137/280 (48%), Positives = 196/280 (70%), Gaps = 4/280 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L+L I+REG ++E  + +G+   PL   G   + +GTEV F PS + F 
Sbjct: 1   GVSVVNALSHELRLTIRREGKVWEQVYHHGVPQFPLRPVGDT-DGSGTEVHFKPSPETFH 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  R+RELSFLNS V I L D+R+ +       Y+GG+ AFV YL+ +K  +
Sbjct: 60  NIHFSWDILAKRIRELSFLNSGVGIVLRDERAGKE--ELFKYEGGLRAFVEYLNTNKTAV 117

Query: 244 MQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            Q      Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +
Sbjct: 118 NQVFHFNCQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNN 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +  
Sbjct: 178 YIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGK 237

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
             + +L E+P EAK +V K++DA+  R+AAR+AR++TRRK
Sbjct: 238 YFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRK 277


>gi|117555558|gb|ABK35306.1| DNA gyrase subunit B [Acinetobacter schindleri]
          Length = 300

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 148/294 (50%), Positives = 197/294 (67%), Gaps = 3/294 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  L+L I R G+I++  + +G    PL V G   + TGT V F PS++ FS   FN 
Sbjct: 1   ALSEKLELTIHRAGHIHQQEYRHGDSQYPLKVIGDT-DRTGTRVRFWPSAETFSQTIFNV 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y++  K  L      
Sbjct: 60  DILARRLRELSFLNAGVRIVLRDERI--NAEYVFDYEGGLSEFVKYINEGKTHLNDIFHF 117

Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
              + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + +Y++    
Sbjct: 118 TTMAENGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLNNYMDSENI 177

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +N   S +L 
Sbjct: 178 LKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTAVEQAMNKSFSEYLL 237

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
           E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA LPGKLADC E+   
Sbjct: 238 ENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKIQH 291


>gi|209420598|gb|ACI47062.1| gyrase B [Mycobacterium tuberculosis]
          Length = 302

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 129/276 (46%), Positives = 176/276 (63%), Gaps = 2/276 (0%)

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y GG   FV +++R K  +  S +   G      +++AM+WN GY E+V  F N I  
Sbjct: 29  FHYPGGPVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFANTINT 88

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GG H  G RSALT  +  Y +     K    ++ GDD REG  +V+S+K+ +P+F  Q
Sbjct: 89  HEGGRHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQ 148

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AAR+AR+L RRK
Sbjct: 149 TKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARELVRRK 208

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
              DI  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE+
Sbjct: 209 SATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEK 268

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498
           AR D++L + E+  +ITALGTGI  +      LRYH
Sbjct: 269 ARIDRVLKNTEVQAIITALGTGIHDEFDI--GLRYH 302


>gi|938029|dbj|BAA05969.1| DNA gyrase subunit B [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 104

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 61/109 (55%), Positives = 78/109 (71%), Gaps = 5/109 (4%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M++N +   YD  +IQ+L+GL+AV+KRP MYIG TD   GLHH+++E++DNAIDE+L GY
Sbjct: 1   MAENKK---YDESAIQVLEGLEAVRKRPGMYIGSTDN-KGLHHLVWEIVDNAIDEALAGY 56

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109
              I V L  D S TV DNGRGIPT +H + G    EVI + LHAGGKF
Sbjct: 57  CTQIDVILEKDNSITVIDNGRGIPTGMH-KTGKPTPEVIFSVLHAGGKF 104


>gi|117675813|emb|CAL69177.1| DNA gyrase subunit B [Subtercola frigoramans]
          Length = 295

 Score =  211 bits (538), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 130/295 (44%), Positives = 191/295 (64%), Gaps = 4/295 (1%)

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGSR- 254
           +++FLN  ++I+L D+R  E   ++  Y+ G+  +V Y    +  + +    I  +    
Sbjct: 1   QMAFLNKGLRITLTDERGEEDVVVSYLYERGLVDYVEYLNRAKKNELVHDEVISFESEDT 60

Query: 255 -DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
              IS+++AM+W +GY E+V  + N I   +GGTH  G R+ALT  +  Y  +    K+ 
Sbjct: 61  DRKISLEVAMQWTNGYTESVHTYANTINTHEGGTHEEGFRAALTTLVNKYAREKSILKEK 120

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
             ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E ++ V+      L+ W +  P 
Sbjct: 121 DENLTGDDVREGLTAVISVKLAEPQFEGQTKTKLGNTEAKAFVQRVAGKELADWFDRKPT 180

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EA+ I++K + AS  R AAR+AR+ TRRKG+L+   +PGKL DCS RDP KSE+F+VEGD
Sbjct: 181 EAREIIRKAIQASQARMAARKAREQTRRKGLLEGGGMPGKLKDCSSRDPAKSEIFIVEGD 240

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           SAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L + E+  +ITA G GIG+D
Sbjct: 241 SAGGSAIQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMITAFGAGIGED 295


>gi|281332044|emb|CAZ39996.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 246

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 122/242 (50%), Positives = 159/242 (65%), Gaps = 3/242 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L + + + G  Y+  F NG     L          GT V F P
Sbjct: 1   GGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRGTTVRFWP 59

Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S+  F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L
Sbjct: 60  STVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R AL
Sbjct: 119 AQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           TR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  V
Sbjct: 179 TRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAV 238

Query: 357 ES 358
           E+
Sbjct: 239 EN 240


>gi|50871666|emb|CAG15375.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 284

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/287 (48%), Positives = 201/287 (70%), Gaps = 4/287 (1%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           GVSVVNALS  L+L I+R   ++E  + +G+   PL   G   + +GTEV F PS + FS
Sbjct: 1   GVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPETFS 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++AFV YL+ +K  +
Sbjct: 60  NIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNKTAV 117

Query: 244 MQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +
Sbjct: 118 NEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNN 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +  
Sbjct: 178 YIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGK 237

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
             + +L E+P EAK +V K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 238 YFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAG 284


>gi|308153098|dbj|BAJ22138.1| DNA gyrase subunit B [Streptomyces vitaminophilus]
          Length = 321

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 117/321 (36%), Positives = 188/321 (58%), Gaps = 18/321 (5%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
              Y VSGGLHGVG+SVVNALS+ L + I  +G+ +   + +G   +PL     A + TG
Sbjct: 1   GGGYAVSGGLHGVGLSVVNALSTRLSVEIWTDGHRWTQDYKDGAPASPLAR-HEATSRTG 59

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------P 216
           T +TF     +F   ++++ TL  R +E++FLN  + ++L D+R               P
Sbjct: 60  TSLTFWADGGVFETTEYSFATLARRFQEMAFLNRGLTLTLTDERPSARATAAANAADSDP 119

Query: 217 EPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENV 273
             + ++  Y GGI  FV++   R  +P+  S I I        +S ++A++W+  Y ++V
Sbjct: 120 AAKTVSYRYDGGITDFVAHLNARKGEPVHPSVITIAAEDTERLLSAEVALQWSGQYTDSV 179

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             + N I   +GGTH  G R+ALT  +  Y  +    ++   ++ G+D REG T+++S+K
Sbjct: 180 YSYANAIHTHEGGTHEEGFRAALTTVVNRYAREKKLLREKDANLSGEDVREGLTAIISVK 239

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL ++E R+ ++  V++ L+ W + +P EA  IV+K + A+  R AAR
Sbjct: 240 LGEPQFEGQTKTKLGNTEARTFLQKIVHEHLTDWFDRNPNEAADIVRKAIQAATARVAAR 299

Query: 394 RARDLTRRKGVLDIASLPGKL 414
           RARDLTRRKG+L+ A+LPGKL
Sbjct: 300 RARDLTRRKGLLETAALPGKL 320


>gi|262272829|gb|ACY40634.1| GyrB [Leptotrichia buccalis]
          Length = 230

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 123/229 (53%), Positives = 171/229 (74%), Gaps = 1/229 (0%)

Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394
           P+P+F  QTK KL +SEV  +V + V   L  +LE+HP +A+ +++K++ +   R+AA++
Sbjct: 1   PEPQFEGQTKTKLGNSEVTGIVSNIVGTNLKFYLEDHPKDAERVIEKMVMSKRAREAAKK 60

Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454
           AR+L  RK  L++ SLPGKLADCS +DP +SE+F+VEG+SAGGSAKQGR R  QAILPLR
Sbjct: 61  ARELVLRKNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLR 120

Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514
           GKILNVE++   K L + EI  +ITA G G G++  D+ KLRYHKI+IMTDADVDGAHIR
Sbjct: 121 GKILNVEKSGIHKALENAEIRAMITAFGAGFGEEI-DLKKLRYHKIVIMTDADVDGAHIR 179

Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563
           TL+LTFF+R +  LI+ G++YI +PPLY I  GK+++Y   ++ ++   
Sbjct: 180 TLMLTFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQVT 228


>gi|225419993|ref|ZP_03762296.1| hypothetical protein CLOSTASPAR_06334 [Clostridium asparagiforme
           DSM 15981]
 gi|225041344|gb|EEG51590.1| hypothetical protein CLOSTASPAR_06334 [Clostridium asparagiforme
           DSM 15981]
          Length = 312

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 132/255 (51%), Positives = 165/255 (64%), Gaps = 2/255 (0%)

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           DP+F  QTK+KL SS+ R  V+S V   +  +LE+HP  AK I  K + A   +DAA+ A
Sbjct: 1   DPQFEGQTKQKLGSSQARPAVDSLVYHRMILFLEQHPDAAKAICSKAMLARKAKDAAKSA 60

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RDL RRK  L   +LPGKLADCS R+P   ELF+VEGDSAGGSAK  R RENQA+LPLRG
Sbjct: 61  RDLARRKTALSGLTLPGKLADCSGRNPDSCELFIVEGDSAGGSAKAARCRENQAVLPLRG 120

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           KILNVE+A  DK+ S+ EI  +I+A GTGI  +SF + +LRYHKII+MTDADVDGAHI T
Sbjct: 121 KILNVEKAAMDKISSNAEIKAMISAFGTGI-LESFSLERLRYHKIILMTDADVDGAHITT 179

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IEL 574
           LLLTF FR MP LI +G +++ +PPLY + +G+ L Y   +  L   L            
Sbjct: 180 LLLTFLFRFMPELIRSGHIFLAQPPLYRVEKGRKLWYAYSDAQLSRILDENERDGTYKIQ 239

Query: 575 FCDSKGVISKNDLRN 589
                G +    L  
Sbjct: 240 RYKGLGEMDAQQLWE 254



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 10/192 (5%)

Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680
           + N E      +S  +++   ++       +S+         ++      V    +    
Sbjct: 122 ILNVEKAAMDKISSNAEIKAMISAFGTGILESFSLERLRYHKIILMTDADVDGAHITTLL 181

Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GIS-MQR 738
             F F    + I S  I       L  +  G K+      + L  I     + G   +QR
Sbjct: 182 LTFLFRFMPELIRSGHIF-LAQPPLYRVEKGRKLWYAYSDAQLSRILDENERDGTYKIQR 240

Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKI-----TDA-SQADDLFSRLMGDEVEPRREFI 792
           YKGLGEM+A QLWETT++P+ R LL+V       +D  +  D  FS LMG++VEPRR+FI
Sbjct: 241 YKGLGEMDAQQLWETTMDPERRVLLKVTTGGGADSDVLADTDRTFSLLMGNDVEPRRDFI 300

Query: 793 QENSLPSA-LDI 803
             N+   + LD+
Sbjct: 301 LANADRISMLDV 312


>gi|190148866|gb|ACE63408.1| DNA gyrase B subunit [Pseudonocardia xinjiangensis]
          Length = 330

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 137/332 (41%), Positives = 198/332 (59%), Gaps = 17/332 (5%)

Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207
             +   +   PL   G     TG+ VT+    DIF    +N +T++ RL+E++FLN  + 
Sbjct: 1   QHYARSVP-GPLRK-GEPTKKTGSTVTYWADGDIFETLTYNIETIRRRLQEMAFLNKGLT 58

Query: 208 ISLIDKRSPEP---------------REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           I+L D+R+ +                +E T  Y  G+E FV++L++ K P+ +  +   G
Sbjct: 59  ITLRDERNGDNGEAEEPDAEGYVAKVKEYTFCYPNGLEDFVAHLNKSKDPIHKKLVSFTG 118

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
                 +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+
Sbjct: 119 EGTGHQVEVAMQWNSGYTESVYTFANTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKE 178

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
              ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P
Sbjct: 179 KDPALSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNP 238

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
            EA+ IV K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSE+++VEG
Sbjct: 239 TEARTIVNKAVQSAQARAAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEG 298

Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           DSAGGSAK GR    QAILP+RGKI+NVE+AR
Sbjct: 299 DSAGGSAKSGRDSMFQAILPIRGKIINVEKAR 330


>gi|146189322|emb|CAL91129.1| DNA gyrase subunit beta [Ensifer adhaerens]
 gi|146189324|emb|CAL91130.1| DNA gyrase subunit beta [Ensifer adhaerens]
          Length = 224

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 144/224 (64%), Positives = 184/224 (82%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D PL VTG AG+ TGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRSGKIHEMSFTHGVADAPLAVTGDAGDATGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ FS  +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV+YL
Sbjct: 61  PSAETFSKTEFDYSTLEHRLRELAFLNSGVRIMLTDKRHSDIRQDEMMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+AL
Sbjct: 121 DRAKKPLVHKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+TSY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVTSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|325305388|gb|ADZ06042.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
          Length = 287

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 158/290 (54%), Positives = 208/290 (71%), Gaps = 3/290 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFL
Sbjct: 1   GHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++A
Sbjct: 60  NSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY+EK   SKK K +  GDD 
Sbjct: 118 MQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSKKAKSAASGDDV 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEG
Sbjct: 238 IDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|146189336|emb|CAL91136.1| DNA gyrase subunit beta [Sinorhizobium saheli]
 gi|146189354|emb|CAL91145.1| DNA gyrase subunit beta [Sinorhizobium saheli]
 gi|146189378|emb|CAL91157.1| DNA gyrase subunit beta [Sinorhizobium saheli]
          Length = 224

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 144/224 (64%), Positives = 181/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ LKL+I+R G ++EMSF +G+ D PL +TG AG +TGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSTSLKLKIRRAGKVHEMSFTHGVADGPLTITGDAGGETGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F++ TL+HRLREL+FLNS V+I L DKR  + R   M Y GG+EAFV+YL
Sbjct: 61  PSEQTFSNIEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDEMMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|146189334|emb|CAL91135.1| DNA gyrase subunit beta [Ensifer adhaerens]
          Length = 224

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 147/224 (65%), Positives = 184/224 (82%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L+I+R G I+EMSF +G+ D PL V G AG+DTGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVMLRLKIRRAGKIHEMSFTHGVADAPLKVIGDAGSDTGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  DF+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV+YL
Sbjct: 61  PSTETFTKTDFDYGTLEHRLRELAFLNSGVRIVLTDKRHSDVRQDEMMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+Q P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVQKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY E S  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYGETSGITKKEKVTLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|325305394|gb|ADZ06045.1| DNA gyrase subunit B [Aeromonas veronii bv. veronii]
          Length = 287

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 157/290 (54%), Positives = 208/290 (71%), Gaps = 3/290 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFL
Sbjct: 1   GHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++A
Sbjct: 60  NSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD 
Sbjct: 118 MQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDV 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEG
Sbjct: 238 IDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|146189368|emb|CAL91152.1| DNA gyrase subunit beta [Ensifer sp. LMG 20571]
          Length = 224

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 148/224 (66%), Positives = 184/224 (82%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L+I+R G I+EMSF +G+ D+PL V G AG DTGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVMLRLKIRRAGKIHEMSFTHGVADSPLKVIGDAGTDTGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS+D F+  DF+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV+YL
Sbjct: 61  PSTDTFTKTDFDYGTLEHRLRELAFLNSGVRIVLTDKRHSDVRQDEMMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+Q P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVQKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY E S  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYGESSGITKKEKVTLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|66271266|gb|AAY43846.1| DNA gyrase subunit B [Vibrio sp. STD 3101]
          Length = 245

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 124/245 (50%), Positives = 174/245 (71%), Gaps = 3/245 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ FS 
Sbjct: 3   VSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSN 61

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
            +F+YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P++
Sbjct: 62  TEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPII 120

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +        R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+
Sbjct: 121 EKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSF 180

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           ++K   SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + 
Sbjct: 181 LDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEK 240

Query: 364 LSAWL 368
           LS  L
Sbjct: 241 LSEIL 245


>gi|115500932|dbj|BAF34136.1| B subunit gyrase [Azotobacter salinestris]
          Length = 225

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 113/226 (50%), Positives = 160/226 (70%), Gaps = 4/226 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L L I+R+G ++E ++++G+   PL   G     TGT++
Sbjct: 1   YKVSGGLHGVGVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQAPLAAVGDTE-GTGTQI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS++ F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV
Sbjct: 60  HFKPSAETFHNIHFSWDILAKRLRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLKAFV 117

Query: 234 SYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
            YL+ +K  + Q     +Q   D + +++A++WNDG++EN+LCFTNNIPQ+DGGTHL+G 
Sbjct: 118 DYLNTNKNAVSQVFHFSVQREEDGVGVEVALQWNDGFNENILCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
           RSALTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+
Sbjct: 178 RSALTRNLNAYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPK 223


>gi|146189338|emb|CAL91137.1| DNA gyrase subunit beta [Sinorhizobium arboris]
 gi|146189358|emb|CAL91147.1| DNA gyrase subunit beta [Sinorhizobium arboris LMG 14919]
          Length = 224

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 146/224 (65%), Positives = 180/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKLRI+R G I+EMSF +G+ D PL VTG AG++TGTEVTF 
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLRIRRAGKIHEMSFTHGVADGPLKVTGDAGDETGTEVTFT 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F++ TL+HRLREL+FLNS V+I L DKR  + R   M Y GG+EAFV+YL
Sbjct: 61  PSEQTFSNVEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRREEMMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND +HENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSFHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY E S  +KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYAETSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|325305360|gb|ADZ06028.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 287

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 155/290 (53%), Positives = 208/290 (71%), Gaps = 3/290 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G++YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFL
Sbjct: 1   GHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++A
Sbjct: 60  NSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD 
Sbjct: 118 MQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDV 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEG
Sbjct: 238 IDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|331029385|gb|AEC49842.1| DNA gyrase beta subunit [Bradyrhizobium elkanii]
 gi|331029387|gb|AEC49843.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 696]
 gi|331029393|gb|AEC49846.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6053]
          Length = 227

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 129/229 (56%), Positives = 164/229 (71%), Gaps = 2/229 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTE 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTFL S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E F
Sbjct: 61  VTFLASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVEEF 120

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G 
Sbjct: 121 VKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGF 180

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           R ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FSS
Sbjct: 181 RGALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 227


>gi|325305358|gb|ADZ06027.1| DNA gyrase subunit B [Aeromonas veronii bv. veronii]
 gi|325305362|gb|ADZ06029.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305364|gb|ADZ06030.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305366|gb|ADZ06031.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305368|gb|ADZ06032.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305370|gb|ADZ06033.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305372|gb|ADZ06034.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305374|gb|ADZ06035.1| DNA gyrase subunit B [Aeromonas veronii bv. veronii]
 gi|325305376|gb|ADZ06036.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305378|gb|ADZ06037.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305380|gb|ADZ06038.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305382|gb|ADZ06039.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305384|gb|ADZ06040.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305386|gb|ADZ06041.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305396|gb|ADZ06046.1| DNA gyrase subunit B [Aeromonas veronii bv. veronii]
          Length = 287

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 157/290 (54%), Positives = 207/290 (71%), Gaps = 3/290 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFL
Sbjct: 1   GHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++A
Sbjct: 60  NSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD 
Sbjct: 118 MQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDV 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEG
Sbjct: 238 IDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|146189396|emb|CAL91166.1| DNA gyrase subunit beta [Agrobacterium rubi]
          Length = 224

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 134/224 (59%), Positives = 176/224 (78%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WLKLRI+R G I+E+SF +G+ D PL + G     +GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F++ ++ Y TL+HRLREL+FLNS V+I L DKR  + ++  M Y GG+ AFV YL
Sbjct: 61  ASTETFTMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIKQEEMLYDGGLAAFVQYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I G +D I++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRSKKPLVDKPVYIIGEKDGITVEVAMWWNDTYHENMLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+TSY + S  +K++K S+ G+DCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|146189350|emb|CAL91143.1| DNA gyrase subunit beta [Sinorhizobium terangae]
 gi|146189352|emb|CAL91144.1| DNA gyrase subunit beta [Sinorhizobium terangae]
 gi|146189356|emb|CAL91146.1| DNA gyrase subunit beta [Sinorhizobium terangae]
          Length = 224

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 147/224 (65%), Positives = 182/224 (81%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS+ LKL+I+R G I+EMSF +G+ D PL VTG AG DTGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSTSLKLKIRRSGKIHEMSFTHGVADGPLQVTGDAGTDTGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F Y TL+HRLREL+FLNS V+I L DKR  + R   M Y+GG+EAFV+YL
Sbjct: 61  PSEQTFSNVEFEYTTLEHRLRELAFLNSGVRIVLTDKRHSDIRRDEMMYEGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+ SP+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVHSPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+TSY E S  +KK+K ++ G+DCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVTSYAESSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|164456609|dbj|BAF97797.1| gyrase B subunit [Photobacterium angustum]
          Length = 259

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 132/261 (50%), Positives = 185/261 (70%), Gaps = 3/261 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  ++L I+R G+IY+  + +G+ D PL V G     TGT + F PS D F+  +F+Y
Sbjct: 1   ALSEKVELTIQRAGHIYQQVYRHGVPDAPLAVIGDTE-KTGTRIRFWPSEDTFTNIEFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V I+L D+R  + +E    Y+GGI AFV +L+R+K P+      
Sbjct: 60  DILAKRLRELSFLNSGVSINLSDER-EDGKEDHFMYEGGIRAFVEHLNRNKTPIHPKVFH 118

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R ALTR + S+++K  
Sbjct: 119 FDSERDDGISVEVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L+ +L
Sbjct: 179 YSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFL 238

Query: 369 EEHPLEAKIIVKKVLDASMVR 389
            E+P +AK +  K++DAS  R
Sbjct: 239 LENPADAKTVCTKIIDASRAR 259


>gi|146189376|emb|CAL91156.1| DNA gyrase subunit beta [Sinorhizobium arboris]
          Length = 224

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 145/224 (64%), Positives = 180/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKLRI+R G ++EMSF +G+ D PL VTG AG++TGTEVTF 
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLRIRRAGKVHEMSFTHGVADGPLKVTGDAGDETGTEVTFT 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F++ TL+HRLREL+FLNS V+I L DKR  + R   M Y GG+EAFV+YL
Sbjct: 61  PSEQTFSNVEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRREEMMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND +HENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSFHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY E S  +KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYAETSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|325305390|gb|ADZ06043.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
          Length = 287

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 156/290 (53%), Positives = 207/290 (71%), Gaps = 3/290 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G++YE ++  G    PL   G +   TGT+V F PS  IFS   F+Y+ L  RLRELSFL
Sbjct: 1   GHVYEQTYHLGEPQAPLKQIGDST-GTGTQVRFWPSPAIFSDTLFHYEILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++A
Sbjct: 60  NSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD 
Sbjct: 118 MQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDV 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEG
Sbjct: 238 IDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|146189342|emb|CAL91139.1| DNA gyrase subunit beta [Sinorhizobium meliloti]
 gi|146189344|emb|CAL91140.1| DNA gyrase subunit beta [Sinorhizobium meliloti]
 gi|146189374|emb|CAL91155.1| DNA gyrase subunit beta [Sinorhizobium meliloti]
          Length = 224

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 146/224 (65%), Positives = 179/224 (79%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D PL VTG AG +TGTEVTF 
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAGGETGTEVTFT 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F + TL+HRLREL+FLNS V+I L DKR  + R   M Y GG+EAFV+YL
Sbjct: 61  PSEQTFSNIEFEFGTLEHRLRELAFLNSGVRIVLTDKRHSDIRREEMMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+Q P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVQKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|308522584|dbj|BAJ22903.1| gyrase B subunit [Aliivibrio sifiae]
 gi|308522586|dbj|BAJ22904.1| gyrase B subunit [Aliivibrio sifiae]
 gi|308522590|dbj|BAJ22906.1| gyrase B subunit [Aliivibrio sp. ATCC 33715]
          Length = 265

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 134/267 (50%), Positives = 185/267 (69%), Gaps = 4/267 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  ++L I R+G I++ ++ +G    PL V     + TGT++ F PS   F
Sbjct: 1   VGVSVVNALSEKVELTIHRKGEIFQQTYCHGEPQAPLAVV-GTTDTTGTKIRFWPSDQTF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +  +F YD L  RLRELSFLNS V I L D R  E +     ++GGI+AFV++L+R+K P
Sbjct: 60  TNVEFVYDILAKRLRELSFLNSGVSIILQDMR-EEDKSDHFMFEGGIQAFVTHLNRNKTP 118

Query: 243 LMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG HLSG RSALTR +
Sbjct: 119 VHQKIFYFDAERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            ++++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 179 NTFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASM 387
           N+ L+ +L E+P EAK++  K++DA+ 
Sbjct: 239 NEKLAEFLAENPGEAKMVCSKIIDAAR 265


>gi|331029397|gb|AEC49848.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6145]
          Length = 227

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 128/229 (55%), Positives = 164/229 (71%), Gaps = 2/229 (0%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTE 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTFL S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E F
Sbjct: 61  VTFLASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVEEF 120

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G 
Sbjct: 121 VKYLDRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGF 180

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           R ALTRQ+  Y + +  +KK+K ++ GDDCREG T+VLS+K+PDP+FSS
Sbjct: 181 RGALTRQVNGYADAN--AKKEKXALTGDDCREGXTAVLSVKVPDPKFSS 227


>gi|297803548|ref|XP_002869658.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315494|gb|EFH45917.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1089

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 122/663 (18%), Positives = 247/663 (37%), Gaps = 69/663 (10%)

Query: 22  DAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDNAIDESLEGYA 61
           + +   P +Y+G T  ++                        +I E+L NA D       
Sbjct: 12  EHILLHPDLYLGSTKEQTQTVFVYENGEMVKREVNFVPAFLRIIDEILINAADNKQRDPC 71

Query: 62  -DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF-NQKSYKVSG 118
            D + V ++ + G   + ++G GIP  +   +      ++  R+       +    K++G
Sbjct: 72  MDSLRVFIDDEKGKICIYNSGSGIPVIILDNDN-YLPHILFGRILTTSVIHDDNEKKITG 130

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           G +G+G  + N  SS  K+      N +   F N + D    +  S   DT T+++F P 
Sbjct: 131 GRNGLGAKLTNIFSSEFKIETADGENKFTKVFRNNMKDEDDHLISSCK-DTFTQISFTPD 189

Query: 179 SDIFSVQDFNYDTL-QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
               +++ F    +   R R L   N       ++        I+     G+        
Sbjct: 190 LQKLNMKCFGESMVSLMRKRVLEVANFLGNSVKVELNGVHIPSISFTNYVGL-------Y 242

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
            +         RI    +    D+ +  +DG       F N++   +GGTH+  + S LT
Sbjct: 243 LNSSKEPDPLPRIAEESNVDGWDICVTSSDG-EFQQFSFVNSVATINGGTHVDYVTSQLT 301

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             I    ++   +   K  V            ++ ++  P F    +EKL S +   + +
Sbjct: 302 NHIVEIAKRKNKNTHLKTHV----LMSHLWVFVNARIDSPTFDFPKREKLTSDQSSFISK 357

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +++     + +  +  K++            A  + R        L  A+  G     
Sbjct: 358 GKLSEEFLKKVAKSAVVEKLL----------SLATFKQRLTI---ENLVDANHAGG---- 400

Query: 418 SERDPKKSELFLVEGDSAGGS---AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
                +K  L L EGDSA           +R    + PLRGK++NV++A   ++  ++ I
Sbjct: 401 --DLSQKCTLILTEGDSAKALPMVGMSALNRNLYGVYPLRGKLINVKKASEARITKNKVI 458

Query: 475 GTLITALGTGIGQDSFDINK-LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533
             ++  +G     + +   K LRY +++IMTD D DG HI+ L++  F    PSL+    
Sbjct: 459 RDIMEIIGLKKCYNKYKNTKSLRYGRLMIMTDQDHDGTHIKGLIINLFHTFWPSLLELSP 518

Query: 534 LYIIK--PPLYGITRGKSLQY--VKDEESLEDYLINQSLSEEIELFCDSKGVISKND--- 586
            +I++   PL   T+  + +   +    +  ++       +    +    G  +  +   
Sbjct: 519 SFIVEFITPLVKATQHGTHRIERIYSNPAYNNWSKTIEHDKWSIDYYKGLGTCTYEEACE 578

Query: 587 -LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
            L +  +   +      +   + D  F  + + +     E   ++ +   ++  +  +FI
Sbjct: 579 YLAHIDNHTKEFFWAGDNDGRSIDVAFKTEDIAAKKIWLEEMPKVYIGRLNRRMSYGSFI 638

Query: 646 AEK 648
            E+
Sbjct: 639 NEE 641


>gi|146189386|emb|CAL91161.1| DNA gyrase subunit beta [Rhizobium huautlense]
          Length = 224

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 139/224 (62%), Positives = 180/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WLKLRI+R G ++E+SF +G+ D PL V G     +GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLRIRRNGKVHEISFTHGVADAPLKVIGEYEGRSGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S   F++ +++Y+TL+HRLREL+FLNS V+I L DKR P+ RE  M Y GG+EAFV YL
Sbjct: 61  ASPQTFTMTEYDYNTLEHRLRELAFLNSGVRIRLTDKRKPDIREEEMLYDGGLEAFVRYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL++ P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVEKPVAIKGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+TSY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVTSYADTSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|146189332|emb|CAL91134.1| DNA gyrase subunit beta [Sinorhizobium medicae]
          Length = 224

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 144/224 (64%), Positives = 180/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D PL VTG AG+DTGTEVTF 
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRSGKIHEMSFTHGVADGPLKVTGDAGSDTGTEVTFT 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F +  L+HRLREL+FLNS V+I L DKR  + R   + Y GG+EAFV+YL
Sbjct: 61  PSEQTFSNIEFEFARLEHRLRELAFLNSGVRIVLTDKRHSDIRREELMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+Q P+ I+G +D I++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R+AL
Sbjct: 121 DRAKKPLVQKPVSIRGEKDGITVEVAMWWNDSYHENMLCFTNNIPQRDGGTHMAGFRAAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYADSSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|146189388|emb|CAL91162.1| DNA gyrase subunit beta [Rhizobium leguminosarum]
          Length = 224

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 138/224 (61%), Positives = 184/224 (82%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WLKL+I+R+  I+EMSF +G+ D PL VTG A N+TGTEV+F+
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLKIRRQDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSFM 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS+D F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  + Y GG+EAFV+YL
Sbjct: 61  PSTDTFTMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIRQEELRYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KK L+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+AL
Sbjct: 121 DRAKKSLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+ SY + S  +K++K ++ G+DCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVVSYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|146189382|emb|CAL91159.1| DNA gyrase subunit beta [Rhizobium giardinii]
          Length = 224

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 140/224 (62%), Positives = 181/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL+IKR+G I+E++F +G+ D PL V G +  +TGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVKLKLKIKRQGKIHEINFTHGVADAPLAVIGDSNGETGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV+YL
Sbjct: 61  PSTETFTMIEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIRQDEMIYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVSKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQI SY + S   KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQIVSYADSSGIMKKEKVTLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|146189362|emb|CAL91149.1| DNA gyrase subunit beta [Sinorhizobium medicae]
          Length = 224

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 143/224 (63%), Positives = 180/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL+I+R G ++EMSF +G+ D PL VTG AG+DTGTEVTF 
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRSGKVHEMSFTHGVADGPLKVTGDAGSDTGTEVTFT 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F +  L+HRLREL+FLNS V+I L DKR  + R   + Y GG+EAFV+YL
Sbjct: 61  PSEQTFSNIEFEFARLEHRLRELAFLNSGVRIVLTDKRHSDIRREELMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+Q P+ I+G +D I++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R+AL
Sbjct: 121 DRAKKPLVQKPVSIRGEKDGITVEVAMWWNDSYHENMLCFTNNIPQRDGGTHMAGFRAAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYADSSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|223674710|gb|ACN13051.1| DNA gyrase subunit B [Erwinia billingiae]
          Length = 214

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 110/215 (51%), Positives = 146/215 (67%), Gaps = 4/215 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG ++   +++G+   PL VTG   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET-DLTGTRV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS   F+   DF Y+ L  RLRELSFLNS V I L  +   + R+    Y+GGI+AF
Sbjct: 60  RFWPSHQTFTNVTDFEYEILAKRLRELSFLNSGVSIKL--EDKRDARQDHYHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNKNKTPIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           R+A+TR + +Y++K   SKK K S  GDD REG T
Sbjct: 178 RTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 212


>gi|169248031|gb|ACA51799.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 305

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 172/307 (56%), Positives = 226/307 (73%), Gaps = 4/307 (1%)

Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212
           G    PL V G+      T++ F PS   F+  +F Y+ L  RLRELSFLNS V I L D
Sbjct: 1   GEPQAPLAVVGTTDTTG-TKIRFWPSDQTFTNVEFVYEILAKRLRELSFLNSGVSIILQD 59

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYH 270
            R  E +     ++GGI+AFV++L+R+K P+ Q        R    I +++AM+WND Y 
Sbjct: 60  MR-EEDKSDHFMFEGGIQAFVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQ 118

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           EN+ C+TNNIPQ+DGG HLSG RSALTR + S+++K   SKK K S  GDD REG T+V+
Sbjct: 119 ENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVV 178

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+
Sbjct: 179 SVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARARE 238

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR++TRRKG LDIA LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAI
Sbjct: 239 AARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAI 298

Query: 451 LPLRGKI 457
           LPL+GKI
Sbjct: 299 LPLKGKI 305


>gi|281332010|emb|CAZ39979.1| DNA gyrase subunit B [Stenotrophomonas humi]
          Length = 237

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 122/239 (51%), Positives = 162/239 (67%), Gaps = 3/239 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L L I + G  Y+  +  G + +PL          GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLLLDIYQGGFHYQQEYSXGAIASPLKQL-ETSTKRGTTLRF 59

Query: 176 LPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS+  F    +F+Y+ L  RLRELSFLNS V+I LID+R  E R     Y+GGI++FV 
Sbjct: 60  WPSTTAFHDNVEFHYEILARRLRELSFLNSGVKIVLIDER-GEGRRDDFHYEGGIKSFVE 118

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           +L + K PL  + I + G  + I +++A++W D Y E + CFTNNIPQKDGGTHL+G R 
Sbjct: 119 HLAQVKTPLHPNVISVTGEHNGIVVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRG 178

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           ALTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR
Sbjct: 179 ALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVR 237


>gi|325114637|emb|CBZ50193.1| hypothetical protein NCLIV_006680 [Neospora caninum Liverpool]
          Length = 808

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 154/502 (30%), Positives = 232/502 (46%), Gaps = 63/502 (12%)

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           SV G+  REG   V+S+KM + +F  QTK+KL + +V+ +VE  V DGL ++ E HP   
Sbjct: 356 SVQGEFLREGLVGVVSLKMREAQFEGQTKKKLGNKKVKGIVEELVADGLLSYFESHPQNL 415

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGV---LDIASLPGKLADCSERDPKKS---ELFL 429
           + +++K   A     AA+ ARD  R K       +  LPGKLADCS  + ++    E+F+
Sbjct: 416 QKLLQKAAAARAAAVAAKAARDFARAKQQSSTFHLTLLPGKLADCSPTNAQERLSKEIFI 475

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVER-ARFDKMLSSQEIGTLITALGTGI--- 485
           VEG+SA GSAKQ R R  QAILPLRGKILNVE+   F K+  ++E+  LI ALG  +   
Sbjct: 476 VEGESAAGSAKQARDRRTQAILPLRGKILNVEKLGNFGKIFENEELKALIAALGISMTKT 535

Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545
           G+   D++ LRY ++II+TDADVDGAHIR+LLLTFFFR  P L     +++  PPL+ I+
Sbjct: 536 GEVRADLDGLRYSRVIILTDADVDGAHIRSLLLTFFFRLQPELFRQSRIFVACPPLFKIS 595

Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604
                + + +  +        S +  +            +       +     ++ +   
Sbjct: 596 HFPVPRKLLNAATAAQSDGRASRAAAVPLRDAAEGEQEEEEGQEEKGEKEEDEERELGRA 655

Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664
                +T++               E    +   L        +  E         +  +V
Sbjct: 656 KRLVTETYV------------WTDEEVEQVLQVLRTYREGRPKTKETKETSGAWRAADVV 703

Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724
               RG  +    + ++  S G    R  S  +    L                      
Sbjct: 704 SGAERGDGDV---DTAAAKSAGPGALREDSKTLPGVTLQRF------------------- 741

Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784
                  KG+        GEM   QL  TT++P TR L R+ + DA +A+ + + LMGD+
Sbjct: 742 -------KGL--------GEMQPEQLRRTTMSPATRILKRISVADAQEAEAVVASLMGDD 786

Query: 785 VEPRREFIQENSLPS---ALDI 803
           VE R++ I E S       LD+
Sbjct: 787 VEARKKIISEASSEVFVEDLDV 808



 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 105/212 (49%), Gaps = 40/212 (18%)

Query: 26  KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG-SCTVSDNGRGIP 84
            RP MYIG TD E GLHH+++E +DNA+DE   G    I V L+ D  S TV+D+GRGIP
Sbjct: 1   MRPGMYIGSTDTE-GLHHLVWEAIDNAVDEIENGGCRHIVVVLHSDRRSVTVADDGRGIP 59

Query: 85  TDLHKEEGISAAEVIMTRLHAGGKF---------------NQKSYKVSGGLHGVGVSVVN 129
             +H + G+S  E + T+LHAGGKF                  SY  +GGLHGVG SV+N
Sbjct: 60  CGVHPQTGVSTLETVFTKLHAGGKFAPAASQSVSSGAIEGASSSYAFAGGLHGVGSSVIN 119

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFN 188
           ALS+ L +                    P      +  D+GT +TF   + +F       
Sbjct: 120 ALSAKLHV-----------------ASGP-----ESVPDSGTCLTFQFDTQVFGEDVLLE 157

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220
              ++ RL+ L++L+ +      +    + R+
Sbjct: 158 GKKIERRLKALAYLHPTASFQFFEMPKQKRRQ 189


>gi|291196250|emb|CBG14536.1| DNA gyrase subunit B [Pseudomonas thermotolerans]
          Length = 267

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 126/261 (48%), Positives = 182/261 (69%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R+G ++E  + +G+   PL   G     TGTEV F PS++ FS 
Sbjct: 1   VSVVNALSEELRLTIRRDGKVWEQVYHHGVPQFPLRPVGDTE-GTGTEVHFKPSAETFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+R+ +       Y+GG++AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--EMFKYEGGLKAFVEYLNTNKNVVN 117

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 QVFHFSVQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKF 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            S +L E+P EA+ +V K++D
Sbjct: 238 FSDYLLENPNEARAVVGKMID 258


>gi|219963032|gb|ACL68104.1| DNA gyrase subunit B [Xenorhabdus romanii]
          Length = 287

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 154/290 (53%), Positives = 209/290 (72%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+  +PL V G   + TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYRHGVPQSPLKVVGDTEH-TGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--NAEEHFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L EHP +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLEHPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|291196137|emb|CBG14428.1| DNA gyrase subunit B [Pseudomonas azotifigens]
          Length = 266

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 127/260 (48%), Positives = 178/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG ++E ++ +G+   PL   G     +GTEV F PS++ F  
Sbjct: 1   VSVVNALSEELQLTIRREGKVWEQTYRHGVPQAPLSPVGETE-SSGTEVHFKPSAETFQN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGILLRDERSAKE--ELFKYEGGLRAFVEYLNTNKNAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+
Sbjct: 118 QVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNAYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKLKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
             +L EHP EAK +V K++D
Sbjct: 238 GDFLLEHPNEAKAVVGKMID 257


>gi|291196123|emb|CBG14414.1| DNA gyrase subunit B [Pseudomonas alcaliphila]
          Length = 267

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 128/261 (49%), Positives = 181/261 (69%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ F PS + F+ 
Sbjct: 1   VSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAAVGDT-DGTGTQIHFKPSEETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+R+ +       Y+GG++AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNKTVVN 117

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q     IQ   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 QVFHFNIQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRHLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IESEGLAKKFKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            S +L E+P EAK +V K++D
Sbjct: 238 FSDFLLENPNEAKAVVGKMID 258


>gi|291196121|emb|CBG14412.1| DNA gyrase subunit B [Pseudomonas abietaniphila]
          Length = 266

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 181/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGTE+ F PS++ F  
Sbjct: 1   VSVVNALSEELNLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTEIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|219963072|gb|ACL68124.1| DNA gyrase subunit B [Xenorhabdus budapestensis]
 gi|219963074|gb|ACL68125.1| DNA gyrase subunit B [Xenorhabdus budapestensis]
          Length = 287

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 207/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+   PL V G     TGT V F PS D F    DF +D L  RLRELSFL
Sbjct: 1   KVHEQTYHHGVPQAPLKVVGDTE-QTGTTVRFWPSMDTFKINTDFEFDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+         Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRTNTE--DFFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETMMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP +SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPARSELYLVEG 287


>gi|223674700|gb|ACN13046.1| DNA gyrase subunit B [Erwinia rhapontici]
          Length = 214

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 110/215 (51%), Positives = 147/215 (68%), Gaps = 4/215 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG +++  +++G+   PL V+G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELTIRREGKVHQQIYVHGVPQAPLSVSGET-DLTGTRV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS   F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSHQTFTNVVEFEYEILAKRLRELSFLNSGVSIKLEDKRDGKS--DHYHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNKNKTPIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           R+A+TR + +Y++K   SKK K S  GDD REG T
Sbjct: 178 RTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 212


>gi|146189308|emb|CAL91122.1| DNA gyrase subunit beta [Sinorhizobium americanum]
          Length = 224

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 145/224 (64%), Positives = 181/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D PL +TG AG++TGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRSGKIHEMSFTHGVADGPLTITGDAGSETGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F++ TL+HRLREL+FLNS V+I L DKR  + R   M Y GG+EAFV+YL
Sbjct: 61  PSEQTFSKTEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDEMMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|223674692|gb|ACN13042.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 216

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 109/219 (49%), Positives = 150/219 (68%), Gaps = 3/219 (1%)

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DT 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
           TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG
Sbjct: 60  TGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           + AFV YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTH
Sbjct: 118 LRAFVEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           L G RSALTR + +Y+E+   +KK K +  GDD REG T
Sbjct: 178 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 216


>gi|146189394|emb|CAL91165.1| DNA gyrase subunit beta [Agrobacterium rhizogenes]
          Length = 224

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 143/224 (63%), Positives = 183/224 (81%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WLKL+I+R+G I EMSF +G+ D PL VTG AG +TGTEV+F+
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGTETGTEVSFM 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PSS+ F++ +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV YL
Sbjct: 61  PSSETFTMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVRQEEMLYDGGLEAFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+  +D I++++AM WN+ YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVDKPVSIRSEKDGITVEVAMWWNESYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY E S  +K++K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|291196129|emb|CBG14420.1| DNA gyrase subunit B [Pseudomonas argentinensis]
          Length = 266

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 127/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L I+R G I+E ++++G+   PL   G   + TGT++ F PS D F+ 
Sbjct: 1   VSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAAVGDT-DGTGTQIHFKPSEDTFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGILLKDERTAKE--ELFKYEGGLRAFVEYLNVNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+
Sbjct: 118 QVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           + +L EHP EAK +V K++D
Sbjct: 238 ADFLLEHPNEAKAVVGKMID 257


>gi|190148844|gb|ACE63397.1| DNA gyrase B subunit [Pseudonocardia compacta]
          Length = 328

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 137/330 (41%), Positives = 199/330 (60%), Gaps = 17/330 (5%)

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           ++   +   PL   G A   TG+ VT+    DIF    +N +T++ RL+E++FLN  + I
Sbjct: 1   NYARSVP-GPLRK-GEATKKTGSTVTYWADPDIFETLTYNIETIRRRLQEMAFLNKGLTI 58

Query: 209 SLIDKRSP---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
           +L D+R+                + +E T  Y  G+E FV++L++ K P+ +  +   G 
Sbjct: 59  TLCDERNGDSAEAEEPDAEGYVAKVKEYTFCYPNGLEDFVAHLNKTKDPIHKKLVSFTGE 118

Query: 254 RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
                +++AM+WN GY E+V  F N I   +GGTH  G RSALT  +  Y       K+ 
Sbjct: 119 GTGHQVEVAMQWNSGYTESVYTFANTINTHEGGTHEEGFRSALTTTVNKYARDKKLLKEK 178

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
             ++ GDD REG  +++S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P 
Sbjct: 179 DPALSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPA 238

Query: 374 EAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGD 433
           EA+ IV K + ++  R AAR+AR+L RRK   DI  LPGKLADC   DP KSE+++VEGD
Sbjct: 239 EARTIVNKAVQSAQARAAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGD 298

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERA 463
           SAGGSAK GR    QAILP+RGKI+NVE+A
Sbjct: 299 SAGGSAKSGRDSMFQAILPIRGKIINVEKA 328


>gi|146189340|emb|CAL91138.1| DNA gyrase subunit beta [Sinorhizobium fredii]
 gi|146189346|emb|CAL91141.1| DNA gyrase subunit beta [Sinorhizobium fredii]
 gi|146189348|emb|CAL91142.1| DNA gyrase subunit beta [Sinorhizobium fredii]
 gi|146189370|emb|CAL91153.1| DNA gyrase subunit beta [Sinorhizobium fredii]
          Length = 224

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 145/224 (64%), Positives = 181/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D PL +TG AG++TGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVTLKLKIRRAGKIHEMSFTHGVADGPLAITGDAGSETGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F++ TL+HRLREL+FLNS V+I L DKR  + R   M Y GG+EAFV+YL
Sbjct: 61  PSEQTFSKTEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDEMMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|190148860|gb|ACE63405.1| DNA gyrase B subunit [Pseudonocardia sulfidoxydans]
          Length = 305

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 129/305 (42%), Positives = 188/305 (61%), Gaps = 15/305 (4%)

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------EPR 219
           F    D+F    +N +T++ RL+E++FLN  + I L D+R+                + +
Sbjct: 1   FWADPDVFETTTYNIETIRRRLQEMAFLNKGLTIVLRDERNGDSDEAEEPDAEGYVAKVK 60

Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279
           E    Y GG+E FV++L++ K P+ +  +   G     ++++AM+WN GY E+V  F N 
Sbjct: 61  EHVFHYPGGLEDFVAHLNKTKDPIHKKLVSFSGEAPGHALEVAMQWNSGYTESVYTFANT 120

Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           I   +GGTH  G R+ALT  +  Y       K+   ++ GDD REG  +++S+K+ +P+F
Sbjct: 121 INTHEGGTHEEGFRAALTSTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKEPQF 180

Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399
             QTK KL ++EV+S V+   N+ L+ W E +P EA+ IV K + ++  R AAR+AR+L 
Sbjct: 181 EGQTKTKLGNTEVKSFVQRISNEWLADWFERNPAEARTIVNKAVQSAQARMAARKARELV 240

Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
           RRK   DI  LPGKLADC   DP KSE+++VEGDSAGGSAK GR    QAILP+RGKI+N
Sbjct: 241 RRKSAGDIGGLPGKLADCRSTDPAKSEVYIVEGDSAGGSAKSGRDSMTQAILPIRGKIIN 300

Query: 460 VERAR 464
           VE+AR
Sbjct: 301 VEKAR 305


>gi|146189390|emb|CAL91163.1| DNA gyrase subunit beta [Rhizobium undicola]
          Length = 224

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 141/224 (62%), Positives = 177/224 (79%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L LRI+R G ++EMSF +G+ D PL VTGS    +GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVKLSLRIRRSGKVHEMSFTHGVADAPLAVTGSYEGRSGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV YL
Sbjct: 61  PSAETFTKTEFDYGTLEHRLRELAFLNSGVRILLTDKRKSDIRQEEMIYDGGLEAFVRYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KK L+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRSKKSLVDKPVYIKGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S   KK+K S+ GDDCREG ++VLS+K+PDP+FS
Sbjct: 181 TRQITSYADSSGIIKKEKVSLTGDDCREGLSAVLSVKVPDPKFS 224


>gi|183987586|gb|ACC65783.1| topoisomerase II [Pleurotus nebrodensis]
          Length = 534

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 113/527 (21%), Positives = 217/527 (41%), Gaps = 30/527 (5%)

Query: 120 LHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFL 176
            HG G  + N  S    +    K  G  Y  ++   +       +T ++ N+  T VTF 
Sbjct: 1   RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITNNSRNEEYTRVTFK 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F + D + DT   L+ R+ +++     V++ L ++R              IEA  
Sbjct: 61  PELTRFGMTDIDPDTAGLLRKRVYDMAGTVKDVKVYLNNERLKIKTFKQYVEM-YIEAAT 119

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           +    +     Q+   +   + +   ++A   +DG  + V  F N+I    GGTH++ + 
Sbjct: 120 AGAKENFGGGAQAKPTVIYEQISPRWEVAFATSDGTFQQV-SFANSISTIKGGTHVNYIA 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L++ I +++ K   +   K +      +      ++  + +P F SQTKE L     +
Sbjct: 179 DQLSKSIIAHIAKKNKAATVKPAQ----VKNHMWIFVNALIENPTFDSQTKETLTLPAGK 234

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
                 +++     +++        + +VL+ +  +   +  +    ++  L   +    
Sbjct: 235 FGSRPALSEEFMKKVQKSST-----IDQVLNWAKFKADQQIKKTDGSKRNRLTGMAKLSD 289

Query: 414 LADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
             +   ++ +K  L L EGDSA      G A  GR   N  + PLRGK+LNV  AR D++
Sbjct: 290 ANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRD--NFGVFPLRGKLLNVREARHDQI 347

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + S+EI  +   +G    ++  +++ LRY +++IMTD D DG+HI+ LL+ F     PSL
Sbjct: 348 MKSEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSL 407

Query: 529 IHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +      +    P+  +T+G   +        E +L     S++      +         
Sbjct: 408 LKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDSKK-----WTAKYYKGLGT 462

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
            +  D      ++ K   P       E+ +I   F+ +   +    L
Sbjct: 463 SSDADAREYFSQMGKHMIPFATMEDEERGLIDLAFSKKKADDRKEWL 509


>gi|325305392|gb|ADZ06044.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
          Length = 287

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 157/290 (54%), Positives = 208/290 (71%), Gaps = 3/290 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G++YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFL
Sbjct: 1   GHVYEQTYHLGEPLAPLKQIGDST-GTGTEVRFWPSPAIFSDTLFHYEILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++A
Sbjct: 60  NSGVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD 
Sbjct: 118 MQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDV 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++VEG
Sbjct: 238 IDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|190148830|gb|ACE63390.1| DNA gyrase B subunit [Pseudonocardia ammonioxydans]
          Length = 351

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 134/286 (46%), Positives = 189/286 (66%), Gaps = 1/286 (0%)

Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273
              +P+E    Y  G+E FV++L++ K P+ +  +   G      +++AM+WN GY E+V
Sbjct: 67  YVAKPKEYVFHYPNGLEDFVAHLNKSKDPIHRKIVGYTGEGPGHQVEVAMQWNSGYSESV 126

Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333
             F N I   +GGTH  G R ALT  +  Y       K+   ++ GDD REG  +++S+K
Sbjct: 127 YTFANTINTHEGGTHEEGFRHALTATVNRYARDKKLIKEKDPALSGDDIREGLAAIVSVK 186

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           + +P+F  QTK KL ++EV+S V+   N+ L+ W E +P EAK IV K + ++  R AAR
Sbjct: 187 ISEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPNEAKTIVNKAVSSAQARLAAR 246

Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453
           RAR+L RRK   DI  LPGKL+DC  RDP+  EL++VEGDSAGGSAK GR   +QAILP+
Sbjct: 247 RARELVRRKSAGDIGGLPGKLSDCRSRDPESCELYIVEGDSAGGSAKAGRDSMHQAILPI 306

Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499
           RGKI+NVE+AR D++L + E+ ++ITA+GTGI  D FD++KLRYHK
Sbjct: 307 RGKIINVEKARIDRVLKNTEVQSIITAMGTGI-HDDFDLSKLRYHK 351


>gi|224797457|gb|ACN62758.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797459|gb|ACN62759.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797461|gb|ACN62760.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797463|gb|ACN62761.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797465|gb|ACN62762.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797467|gb|ACN62763.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797469|gb|ACN62764.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797471|gb|ACN62765.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797473|gb|ACN62766.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797475|gb|ACN62767.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797477|gb|ACN62768.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797479|gb|ACN62769.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797481|gb|ACN62770.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797483|gb|ACN62771.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797485|gb|ACN62772.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
          Length = 340

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 133/343 (38%), Positives = 202/343 (58%), Gaps = 7/343 (2%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALSS   + I R+  ++ + F NG      +        TGT VTFLP   IF 
Sbjct: 1   GSSVVNALSSTFDVTIYRDHKVWSIKFANGGQVKEPLTKIGTTTKTGTTVTFLPDHKIFK 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V DF++ T+  R+RE +FLNS V+++L D+R+ +          G+E F++Y++  KK +
Sbjct: 61  VIDFSFSTISERIRESAFLNSGVKLTLTDQRTDKKVSYLF--NNGLEEFITYMNEGKKSI 118

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I ++G    I +++A++++  ++EN+L F NN+   +GG+H++G R+ LT+ I  Y
Sbjct: 119 TP-IIMLKGIEKQIEVEIALQYSTEFNENLLSFANNVKTSEGGSHVAGFRTGLTKVINDY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K+  +++   D REG T+++S+K+P+   ++  QTK KL + E R VVE+ V 
Sbjct: 178 ARKEGLLKEKDKNLDSVDTREGLTAIVSVKIPENLIQYEGQTKGKLGTYEARLVVETIVA 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
                WL E+   A  I++K L A  VR+ AR+AR+     +K       L GKL     
Sbjct: 238 KQFGFWLTENKTNAYTIIEKALLARNVREEARKAREAARNSKKRGNSDRLLTGKLTPAQN 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           R+   +E+FLVEGDSAGGSAK GR R  QAILPLRGK++N E+
Sbjct: 298 RNKFNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEK 340


>gi|218937735|gb|ACL13027.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. delbrueckii]
          Length = 311

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 134/311 (43%), Positives = 202/311 (64%), Gaps = 2/311 (0%)

Query: 153 GILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISL 210
           G +   L   G+    + GT V F P  +IF+      D  L++R+REL+FLN  ++++ 
Sbjct: 1   GRVVEELKEVGTVPLTEHGTIVHFWPDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTF 60

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            DKR          ++GGI+ +VS+L+R ++ L   PI ++G  + I +++++++  GY 
Sbjct: 61  TDKRKDTEETDVYHFEGGIKEYVSFLNRGQEVLFDEPIYVEGKYEGIDVEVSLQYTTGYK 120

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
             ++ F NNI   +GG H +G ++ALTR +  Y  K+   K++  ++ G+D REG T+V+
Sbjct: 121 TTLMTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKENDDNLSGEDIREGMTAVI 180

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K P+P+F  QTK KL +S+ R+ V+   ++  S +L E+P  A+ IV+K   A   R 
Sbjct: 181 SVKHPNPQFEGQTKTKLGNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARV 240

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR++TR+K  L+IA+LPGKLAD +  DP  SELF+VEGDSAGGSAKQGRSR  QAI
Sbjct: 241 AAKRAREVTRKKSGLEIANLPGKLADNTSNDPNXSELFIVEGDSAGGSAKQGRSRLTQAI 300

Query: 451 LPLRGKILNVE 461
           LP+RGKILNVE
Sbjct: 301 LPIRGKILNVE 311


>gi|224797487|gb|ACN62773.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797489|gb|ACN62774.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797491|gb|ACN62775.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797493|gb|ACN62776.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
          Length = 340

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 133/343 (38%), Positives = 202/343 (58%), Gaps = 7/343 (2%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALSS   + I R+  ++ + F NG      +        TGT VTFLP   IF 
Sbjct: 1   GSSVVNALSSTFDVTIYRDHKVWSIKFANGGQVKEPLTKIGTTTKTGTTVTFLPDHKIFK 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V DF++ T+  R+RE +FLNS V+++L D+R+ +          G+E F++Y++  KK +
Sbjct: 61  VIDFSFSTISERIRESAFLNSGVKLTLTDQRTDKKVSYLF--NNGLEEFITYMNGGKKSI 118

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I ++G    I +++A++++  ++EN+L F NN+   +GG+H++G R+ LT+ I  Y
Sbjct: 119 TP-IIMLKGIEKQIEVEIALQYSTEFNENLLSFANNVKTSEGGSHVAGFRTGLTKVINDY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K+  +++   D REG T+++S+K+P+   ++  QTK KL + E R VVE+ V 
Sbjct: 178 ARKEGLLKEKDKNLDSVDTREGLTAIVSVKIPENLIQYEGQTKGKLGTYEARLVVETIVA 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
                WL E+   A  I++K L A  VR+ AR+AR+     +K       L GKL     
Sbjct: 238 KQFGFWLTENKANAYTIIEKALLARNVREEARKAREAARNSKKRGNSDRLLTGKLTPAQN 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           R+   +E+FLVEGDSAGGSAK GR R  QAILPLRGK++N E+
Sbjct: 298 RNKFNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEK 340


>gi|125487118|gb|ABN42501.1| gyrase B [Xylella fastidiosa]
 gi|125487120|gb|ABN42502.1| gyrase B [Xylella fastidiosa]
          Length = 283

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 169/280 (60%), Positives = 218/280 (77%)

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            E R     Y+GGI +FV +L + K PL  + I + G  + I +D A++W D Y E + C
Sbjct: 4   GEGRRDDFHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGIVVDAALQWTDAYQETMYC 63

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQKDGGTHL+G R+ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P
Sbjct: 64  FTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVP 123

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P FSSQTKEKLVSS+V+  VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+A
Sbjct: 124 EPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKA 183

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RDLTRRKGVLDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRG
Sbjct: 184 RDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRG 243

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495
           KILNVERARFD+MLSS E+GTLITALGTGIG+D ++ +KL
Sbjct: 244 KILNVERARFDRMLSSAEVGTLITALGTGIGKDEYNPDKL 283


>gi|308522588|dbj|BAJ22905.1| gyrase B subunit [Aliivibrio sp. LC2-088]
          Length = 265

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 132/267 (49%), Positives = 186/267 (69%), Gaps = 4/267 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  ++L I R+G I++ ++ +G    PL V     + TGT++ F PS   F
Sbjct: 1   VGVSVVNALSEKVELTIHRKGEIFQQTYHHGEPQAPLAVV-GTTDTTGTKIRFWPSDQTF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           +  +F Y+ L  RLRELSFLNS V I L D R  E +     ++GGI+AFV++L+R+K P
Sbjct: 60  ANIEFVYEILAKRLRELSFLNSGVSIILQDMR-EEDKSDHFMFEGGIQAFVNHLNRNKTP 118

Query: 243 LMQSPIRI--QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           + Q           D I++++AM+WND + EN+ C+TNNIPQ+DGGTHL+G RSALTR +
Sbjct: 119 IHQKIFHFDFTREEDGIAVEVAMQWNDSFQENIFCYTNNIPQRDGGTHLAGFRSALTRTL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            ++++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +
Sbjct: 179 NTFMDKEGFSKKAKASTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 238

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASM 387
            + LS +L E+P EAK++  K++DA+ 
Sbjct: 239 GEKLSEFLAENPGEAKMVCSKIIDAAR 265


>gi|219963076|gb|ACL68126.1| DNA gyrase subunit B [Xenorhabdus cabanillasii]
          Length = 287

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 205/290 (70%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+   PL V G     TGT V F PS D F    DF +D L  RLRELSFL
Sbjct: 1   KVHEQTYHHGVPQAPLKVVGDTE-QTGTTVRFWPSMDTFKINTDFEFDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+         Y+GGI AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRTNTE--DLFHYEGGIRAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETMMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|224797443|gb|ACN62751.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797445|gb|ACN62752.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797447|gb|ACN62753.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797449|gb|ACN62754.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797451|gb|ACN62755.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797453|gb|ACN62756.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797455|gb|ACN62757.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
          Length = 340

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 133/343 (38%), Positives = 203/343 (59%), Gaps = 7/343 (2%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G SVVNALSS   + I R+  ++ + F NG      +        TGT VTFLP   IF 
Sbjct: 1   GSSVVNALSSTFDVTIYRDHKVWSIKFANGGQVKEPLTKIGTTTKTGTTVTFLPDHKIFK 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
           V DF++ T+  R+RE +FLNS V+++L D+R+ +          G+E F++Y++  KK +
Sbjct: 61  VIDFSFSTISERIRESAFLNSGVKLTLTDQRTDKKVSYLF--NNGLEEFITYMNEGKKSI 118

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               I ++G    I +++A++++  ++EN+L F NN+   +GG+H++G R+ LT+ I  Y
Sbjct: 119 TP-IIMLKGIEKQIEVEIALQYSTEFNENLLSFANNVKTSEGGSHVAGFRTGLTKVINDY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361
             K    K+  +++   D REG T+++S+K+P+   ++  QTK KL + E R VVE+ V 
Sbjct: 178 ARKEGLLKEKDKNLDSVDTREGLTAIVSVKIPENLIQYEGQTKGKLGTYEARLVVETIVA 237

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419
                WL E+ + A  I++K L A  VR+ AR+AR+     +K       L GKL     
Sbjct: 238 KQFGFWLTENKVNAYTIIEKALLARNVREEARKAREAARNSKKRGNSDRLLTGKLTPAQN 297

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           R+   +E+FLVEGDSAGGSAK GR R  QAILPLRGK++N E+
Sbjct: 298 RNKFNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEK 340


>gi|219963078|gb|ACL68127.1| DNA gyrase subunit B [Xenorhabdus indica]
 gi|219963080|gb|ACL68128.1| DNA gyrase subunit B [Xenorhabdus indica]
          Length = 287

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 206/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+   PL V G     TGT V F PS D F    DF +D L  RLRELSFL
Sbjct: 1   KVHEQTYHHGVPQAPLKVVGDTE-QTGTTVRFWPSMDTFKINTDFEFDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+         Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRTNTE--DLFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETMMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|281332008|emb|CAZ39978.1| DNA gyrase subunit B [Stenotrophomonas rhizophila]
          Length = 248

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/248 (50%), Positives = 163/248 (65%), Gaps = 3/248 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I + G  Y+  + +G   +PL    +A    GT +   
Sbjct: 1   SGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQV-AASTKRGTTLXIW 59

Query: 177 PSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS   F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +
Sbjct: 60  PSLKAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I++D+A++W D Y E + CFTNNIPQKDGGTHL+G R A
Sbjct: 119 LAQLKTPLHPNVISVTGESNGITVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           LTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 179 LTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 238

Query: 356 VESFVNDG 363
           VES     
Sbjct: 239 VESAFGQR 246


>gi|291196209|emb|CBG14501.1| DNA gyrase subunit B [Pseudomonas oryzihabitans]
          Length = 267

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/261 (48%), Positives = 182/261 (69%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R G ++E  +++G+   PL V G   + TGT+V F PS++ FS 
Sbjct: 1   VSVVNALSEELRLTIRRAGQVWEQVYVHGVPQAPLAVIGET-DTTGTQVHFKPSAETFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IQFSWDILAKRIRELSFLNSGVGIVLRDERSGKE--ELFKYEGGLRAFVDYLNTNKTAVN 117

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 EVFHFQVQREDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            S +L E+P EAK +V K++D
Sbjct: 238 FSDFLLENPNEAKAVVGKMID 258


>gi|326649340|gb|AEA02128.1| DNA gyrase subunit B [Rhizobium borbori]
          Length = 224

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 141/224 (62%), Positives = 177/224 (79%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WLKL+I+R G ++EM F +G+ D PL VTG     +GTEVTF 
Sbjct: 1   SGGLHGVGVSVVNALSIWLKLKIRRSGKVHEMKFTHGVADAPLAVTGEYEGRSGTEVTFQ 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS + F+  +F+Y TL+HRLREL+FLNS V+I L DKR  E R+  + Y+GG+EAFV YL
Sbjct: 61  PSPETFTHIEFDYATLEHRLRELAFLNSGVRILLTDKRRSEVRQDELLYEGGLEAFVRYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+ +P+ I G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVDAPVAIIGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S   KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYADTSGIIKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|324455892|gb|ADY39238.1| gyrase B subunit [Vibrio variabilis]
          Length = 248

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 128/247 (51%), Positives = 176/247 (71%), Gaps = 3/247 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G+I+  ++ +G    PL V G   + TGTE+ F PS + FS  +
Sbjct: 1   VVNALSKQVTLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DKTGTEIRFWPSEETFSNVE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L+DKR  E +     ++GGI+AFV +L+ +K P++Q 
Sbjct: 60  FHYDILAKRLRELSFLNSGVSIKLVDKR-EEDKMDHFMFEGGIQAFVEHLNTNKTPIIQK 118

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++
Sbjct: 119 IFHFDNERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMD 178

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS
Sbjct: 179 KEGFSKKAKTATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLS 238

Query: 366 AWLEEHP 372
            +L E+P
Sbjct: 239 EFLVENP 245


>gi|324455894|gb|ADY39239.1| gyrase B subunit [Vibrio sp. R-40493]
          Length = 245

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 128/247 (51%), Positives = 176/247 (71%), Gaps = 3/247 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  + L I R G+I+  ++ +G    PL V G   + TGTE+ F PS + FS  +
Sbjct: 1   VVNALSKQVTLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DKTGTEIRFWPSEETFSNVE 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+YD L  RLRELSFLNS V I L+DKR  E +     ++GGI+AFV +L+ +K P++Q 
Sbjct: 60  FHYDILAKRLRELSFLNSGVSIKLVDKR-EEDKMDHFMFEGGIQAFVEHLNTNKTPIIQK 118

Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
                  RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++
Sbjct: 119 IFHFDNERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMD 178

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   SKK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS
Sbjct: 179 KEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLS 238

Query: 366 AWLEEHP 372
            +L E+P
Sbjct: 239 EFLVENP 245


>gi|223674694|gb|ACN13043.1| DNA gyrase subunit B [bacterium 2148.1]
          Length = 214

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 110/215 (51%), Positives = 148/215 (68%), Gaps = 4/215 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG +++  +++G+   PL V+G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELTIRREGKVHQQIYVHGVPQAPLAVSGETE-TTGTRV 59

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 60  RFWPSYETFTNVIEFEYEILAKRLRELSFLNSGVSIRLEDKRDGKN--DHYHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 118 VEYLNKNKTPIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           R+A+TR + +Y++K   SKK K S  GDD REG T
Sbjct: 178 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 212


>gi|219963054|gb|ACL68115.1| DNA gyrase subunit B [Xenorhabdus doucetiae]
          Length = 287

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 207/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS + F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYHMGVPQSPLKVVGDTE-QTGTTVRFWPSMETFKLNTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--NAEDHFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|164456761|dbj|BAF97873.1| gyrase B subunit [Vibrio calviensis]
          Length = 248

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 126/249 (50%), Positives = 175/249 (70%), Gaps = 3/249 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  L+L I R G I++  +++G+ + PL   G   ++TGT + F PS   F+   F+
Sbjct: 1   NALSEKLELTIWRHGQIHQQVYVHGVPEAPLAPIGDT-DETGTRIRFWPSDQTFTDLLFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I LID+R  E +     Y+GGI AFV +L+R+K P+  S  
Sbjct: 60  YDILAKRLRELSFLNSGVSIRLIDER-EEDKHDHFTYEGGIRAFVEHLNRNKTPIHPSVF 118

Query: 249 RIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             +  R++ ++++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY+EK 
Sbjct: 119 HFEHEREDGVTVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSYMEKE 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             SKK   +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L  +
Sbjct: 179 GYSKKANAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLGEF 238

Query: 368 LEEHPLEAK 376
           L E P +AK
Sbjct: 239 LIESPQDAK 247


>gi|291196232|emb|CBG14519.1| DNA gyrase subunit B [Pseudomonas poae]
          Length = 266

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 178/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS + F  
Sbjct: 1   VSVVNALSEELILTVRRAGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSDETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|218937739|gb|ACL13029.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. indicus]
          Length = 310

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 133/310 (42%), Positives = 201/310 (64%), Gaps = 2/310 (0%)

Query: 153 GILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISL 210
           G +   L   G+    + GT V F P  +IF+      D  L++R+REL+FLN  ++++ 
Sbjct: 1   GRVVEELKEVGTVPLTEHGTIVHFWPDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTF 60

Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
            DKR          ++GGI+ +VS+L+R ++ L   PI ++G  + I +++++++  GY 
Sbjct: 61  TDKRKDTAETDVYHFEGGIKEYVSFLNRGQEVLFDEPIYVEGKYEGIDVEVSLQYTTGYK 120

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
             ++ F NNI   +GG H +G ++ALTR +  Y  K+   K++  ++ G+D REG T+V+
Sbjct: 121 TTLMTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKLLKENDDNLSGEDIREGMTAVI 180

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K P+P+F  QTK KL +S+ R+ V+   ++  S +L E+P  A+ IV+K   A   R 
Sbjct: 181 SVKHPNPQFEGQTKTKLGNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARV 240

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR++TR+K  L+IA+LPGKLAD +  DP  SELF+VEGDSAGGSAKQGRSR  QAI
Sbjct: 241 AAKRAREVTRKKSGLEIANLPGKLADNTSNDPNXSELFIVEGDSAGGSAKQGRSRLTQAI 300

Query: 451 LPLRGKILNV 460
           LP+RGKILNV
Sbjct: 301 LPIRGKILNV 310


>gi|115500930|dbj|BAF34135.1| B subunit gyrase [Azotobacter chroococcum]
          Length = 226

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 117/229 (51%), Positives = 163/229 (71%), Gaps = 4/229 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I+R+G ++E ++++G+   PL   G     TGT++ F 
Sbjct: 1   SGGLHGVGVSVVNALSEELVLTIRRDGKVWEQTYVHGVSQAPLAAVGDTE-GTGTQIHFK 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV YL
Sbjct: 60  PSAETFHNIHFSWDILAKRLRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLKAFVDYL 117

Query: 237 DRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           + HK  + Q     +Q   D + +++A++WNDG++EN+LCFTNNIPQ+DGGTHL+G RSA
Sbjct: 118 NTHKNAVSQVFHFNMQREEDGVGVEVALQWNDGFNENILCFTNNIPQRDGGTHLAGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           LTR + +Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK
Sbjct: 178 LTRNLNAYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTK 226


>gi|146189380|emb|CAL91158.1| DNA gyrase subunit beta [Rhizobium galegae]
          Length = 224

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 137/224 (61%), Positives = 180/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WLKLRI+R G ++E+SF +G+ D PL V G     +GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLRIRRNGKLHEISFTHGVADGPLKVIGEYEGRSGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            SS+ F++ +++Y TL+HRLREL+FLNS V+I L DKR P+ +E  M Y GG+EAFV YL
Sbjct: 61  ASSETFTMTEYDYGTLEHRLRELAFLNSGVRIRLTDKRKPDIKEEEMLYDGGLEAFVRYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D +++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRSKKPLVDKPVAIKGEKDGMTVEVAMWWNDSYHENMLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+TSY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVTSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|219963088|gb|ACL68132.1| DNA gyrase subunit B [Xenorhabdus poinarii]
 gi|219963090|gb|ACL68133.1| DNA gyrase subunit B [Xenorhabdus poinarii]
          Length = 287

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 153/290 (52%), Positives = 208/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS + F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGDTE-QTGTTVRFWPSMETFKVNTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV YL R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--NAEDHFHYEGGIKAFVEYLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP +SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPARSELYLVEG 287


>gi|109287964|ref|YP_654658.1| hypothetical protein MIV086L [Invertebrate iridescent virus 3]
 gi|123862744|sp|Q196X4|TOP2_IIV3 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|106073587|gb|ABF82116.1| hypothetical protein MIV086L [Aedes taeniorhynchus iridescent
           virus]
          Length = 1113

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 129/703 (18%), Positives = 234/703 (33%), Gaps = 120/703 (17%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDT----------------------DGE 38
           M+       Y   +      +  V     +YIGDT                         
Sbjct: 1   MAPKNHQK-YTIKN-----DIQHVLDCSDVYIGDTAPTARSEWMFDDAVNQIVWRPTTTP 54

Query: 39  SGLHHMIYEVLDNAIDES----LEGY--ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEE 91
             L  +  EVL NA+D        G+     I V ++   G  +V ++G+ IP   + + 
Sbjct: 55  EALVRIFVEVLTNAVDNIERSINGGHELCKNIKVDVDLKTGKTSVWNDGQVIPVVKNCDN 114

Query: 92  GI---------------------SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNA 130
           G+                         +I         ++ ++ +VS G +GVGV   N 
Sbjct: 115 GVVQPPPPTTEQDRLAYEKLNREYIHTIIFGHFRTSSNYDNETDQVS-GKNGVGVKCTNI 173

Query: 131 LSSWLKLR-IKREGN-IYEMSFINGILDNPLVVTGSAGNDTG-TEVTFLPSSDIFSVQDF 187
            SSW  +  +  +    +   + + +  +           TG T V ++P    F ++ +
Sbjct: 174 FSSWFSVVGVDPDRKLKFSQEWRSNMTKSGAPQVVKCALKTGYTLVEYVPDFARFKLKSY 233

Query: 188 NYD---TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             D     +  + + S    +       +R+     +             Y + ++  + 
Sbjct: 234 PEDVESIFKKLVVDASAFFPNTAFFFNGERTVVKNAVAYAKL--------YYNLNETAVD 285

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
              I  + S+  +                + F N      GG H++     +   + + +
Sbjct: 286 SVVIDYKDSKVVV-------VGSATPLPPVSFVNGQITPAGGQHVTNWSRVIFGALLAAL 338

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
                + K   S+   D    F   +  K+  P+F  Q K  L S +V + +++ +   +
Sbjct: 339 -----NGKKNVSLTKADIAPYFQLFIHSKVSKPKFDGQNKNCLKSPKVEAHLDATILKKM 393

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424
             W     ++ K++  K   A    +  R                      D + R    
Sbjct: 394 LKWKIISTIQDKVVKSKEYLALKKIECRRTPIVKVDG-------------YDQANRLGPD 440

Query: 425 SELFLVEGDSAGGSAK--------QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           S L + EG SA   A           + R    ILPLRGK LNV+     K+  ++ +  
Sbjct: 441 SVLIVCEGLSAKSYAVAGIQKGLFNKKGRTYFGILPLRGKFLNVKNTTPLKIGQNKVVSD 500

Query: 477 LITALGTGIG---QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN-G 532
            I  L        + + +   L Y  ++I+TDAD DG HI+ L+L       P+L H  G
Sbjct: 501 FIKVLNLKFNLDYRKATNYATLNYGTLLILTDADKDGIHIKGLILNLIHELFPTLFHRQG 560

Query: 533 FLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
           F+Y ++ P+  I  +        DE S ED+        +   +    G I   D+  F 
Sbjct: 561 FIYSMETPIVKILHKKGQPTLFYDENSFEDWRAQHP-ELKHFKYYKGLGTIGPADVAAFF 619

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634
              +            +       A ++ VF  E+  E    L
Sbjct: 620 GSKVV----------RYHYDEATDAAVNSVFKDENANERKEWL 652


>gi|326536158|ref|YP_004300588.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage 133]
 gi|299483239|gb|ADJ19354.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage 133]
          Length = 611

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 130/584 (22%), Positives = 222/584 (38%), Gaps = 67/584 (11%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGE----------------SGLHHMIYEVLDNAIDE 55
            + I  L   +     P MY+G T  E                +GL  ++ E   N++DE
Sbjct: 3   ENKITSLDDREHCLALPGMYVGSTAREAQELFIDGVYGPQVFCTGLIKLVEETYINSLDE 62

Query: 56  SLE---GYADIITVTLNMDGSC-TVSDNGRGIP---TDLHKEEGISAAEVIMTRLHAGGK 108
           ++     +A+ I   +NM  +  T+ DNGRG+P           +  A V  T + AGG 
Sbjct: 63  AIRTNFKFANKI--AINMTETVATIQDNGRGLPQNIVVDKDGAELPGAVVAYTVVKAGGN 120

Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168
           F     K + G+HG+G S+ N  +   K       N   +   + + +            
Sbjct: 121 FGLDDRK-TAGMHGMGGSLANIFAKDFKAVTCNGENEISLHCTDNMSNIDWTQKK--AKY 177

Query: 169 TGTEVTFLPSSDIFSVQDF-NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            GT+V F P  + F    F   D    R +  +      QI    K + +  +       
Sbjct: 178 KGTKVEFEPDFERFDCTGFTEIDMAIIRNQLQTLAVVYPQIEF--KFNGQKIQGNFKTYA 235

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
                           +                   R  DG+    L + N+I  K GG+
Sbjct: 236 KQYDESVLTSVTDNIQL----------------GLARSEDGFRH--LSYVNSIHTKVGGS 277

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI-KMPDPRFSSQTKEK 346
           H+  +   L+ ++   +++ +    +K        +E  T +L I  M + RF SQTKE+
Sbjct: 278 HVDYIMDELSNELIPKIKRKYKITVNKAR-----IKECLTLLLFIKDMSNLRFDSQTKER 332

Query: 347 LVSS--EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
           L S   EV+  V+  +    +++++      + I+  +++A++ +  A      T+    
Sbjct: 333 LTSPTGEVKKHVDIDIGKLANSFMKN-----ETILMPIIEAALAKQLAAEKSAKTKADNA 387

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
              A +   +       P ++ LFL EGDSA G     R +E     PLRGK+LN     
Sbjct: 388 AKKAKVAKHIKANLYGKPAETTLFLTEGDSAIGYLLSTRDQELHGGYPLRGKVLNTWGKT 447

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG-AHIRTLLLTFFFR 523
           + +M++++E+  +    G  +G  +     L Y  I I  D+D DG   I   LL  FF 
Sbjct: 448 YPQMMANKELFDICAITGLKLGDKA---ENLNYKYIAIFVDSDFDGLGSIYPSLLA-FFS 503

Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
             P L   G + + K P+    +GK   +               
Sbjct: 504 NWPELFEQGRIRLCKAPVTIAVKGKEELFFYSMSEYNKVRDTLK 547


>gi|281332074|emb|CAZ40011.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 236

 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 120/238 (50%), Positives = 161/238 (67%), Gaps = 3/238 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPST-KRGTTLRFWP 59

Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S   F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV +L
Sbjct: 60  SVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVEHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R AL
Sbjct: 119 AQLKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           TR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 TRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 236


>gi|183987574|gb|ACC65777.1| topoisomerase II [Pleurotus tuber-regium]
          Length = 692

 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 110/558 (19%), Positives = 211/558 (37%), Gaps = 31/558 (5%)

Query: 120 LHGVGVSVVNALSSWLKLRIKR--EGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFL 176
            +G G  + N  S    +          Y  ++   +       +T ++  +  T VTF 
Sbjct: 1   RNGYGAKLANIYSLEFTIETADKINEKKYSQTWTKNMTQVGKAKITKNSRGEEYTRVTFK 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F +   + DT   L+ R+ +L+     V++ L D+R                A  
Sbjct: 61  PDLARFGMSHIDTDTASLLRKRVYDLAGTVKDVKVYLNDERLKVKDFKQYVEMYLDAAAA 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
              +         P  I   + +   ++A   +DG  + V  F N+I    GGTH++ + 
Sbjct: 121 DAKENSGGAAQAKPTLI-YEQISGRWEVAFATSDGTFQQV-SFANSISTIKGGTHVNYIA 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L++ + + + K         +V     +      ++  + +P   SQTKE L     +
Sbjct: 179 DQLSKNLIAAITKKN----KGATVKPAQIKNHMWIFVNSLIENPTSDSQTKETLTLPASK 234

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
              +  +++     +++       I+ +VL+ +  +   +  +    ++  L   +    
Sbjct: 235 FGSKPTLSEEFLKKVQKS-----SIIDQVLNWAKFKADQQIKKTDGSKRNRLTGMAKLSD 289

Query: 414 LADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKM 468
             +   +  +K  L L EGDSA      G A  GR   N  + PLRGK+LNV  A+ D++
Sbjct: 290 ANNAGTKQAEKCTLILTEGDSAKSLAVAGLAVVGRD--NFGVFPLRGKLLNVREAKHDQI 347

Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528
           + ++EI  +   +G    ++  +++ LRY +++IMTD D DG+HI+ LL+ F     PSL
Sbjct: 348 MKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSL 407

Query: 529 IHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587
           +      +    P+  +T+G   +        E +L     S++      +         
Sbjct: 408 LKIPEFLVEFVTPIVRVTKGNQRKNFFTIPEYEKWLEETPDSKK-----WTAKYYKGLGT 462

Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647
            +  D       + K   P       E+ +I   F+ +   +                  
Sbjct: 463 SSDADAREYFSHMSKHMIPFATMEEGERELIDLAFSKKKADDR-KEWLRHFKPGTYLDHN 521

Query: 648 KSEKSWHGSINNSDILVK 665
             E  +   IN   IL  
Sbjct: 522 MDEIPFSDFINKELILFS 539


>gi|224039161|gb|ACN38391.1| ParE [Achromobacter denitrificans]
          Length = 290

 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 142/293 (48%), Positives = 194/293 (66%), Gaps = 7/293 (2%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           G S VNALS WL+L I+R G +++M F  G    PL VTG   +  GTEV FL    IF+
Sbjct: 1   GGSCVNALSEWLRLTIRRNGEVHQMEFRQGERVAPLAVTG-TTDKRGTEVRFLADPIIFT 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +++Y+ L  RLRELSFLN+ V+I LID+R  +       + GG++ FV Y++R K  L
Sbjct: 60  NVEYHYEILSKRLRELSFLNNGVKIRLIDQRQGKE--ENFAFSGGVKGFVEYINRAKTVL 117

Query: 244 MQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
             +   +          + +++AM+WND Y E+VLCFTNNIPQ+DGG+HL+GLR+A+TR 
Sbjct: 118 HPNVFSVTTESTAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSHLTGLRAAMTRI 177

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           I  Y+  +  +KK K    GDD REG   VLS+K+P+P+FSSQTK+KLVSSEVR  VE  
Sbjct: 178 INKYITDNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSEVRPAVEEA 237

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           V   L  WL EHP +AK +  K+++A+  R+AAR+AR++TRRK VL+ A LPG
Sbjct: 238 VARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGLPG 290


>gi|169248036|gb|ACA51801.1| DNA gyrase subunit B [Aliivibrio wodanis]
          Length = 305

 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 168/291 (57%), Positives = 222/291 (76%), Gaps = 3/291 (1%)

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           ++ F PS   F+  +F Y+ L  RLRELSFLNS V I L D R  E +     ++GGI+A
Sbjct: 16  KIRFWPSDQTFTNVEFVYEILAKRLRELSFLNSGVSIILQDMR-EEDKSDHFMFEGGIQA 74

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           FV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG HL
Sbjct: 75  FVTHLNRNKTPVHQKIFYFDAERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHL 134

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG RSALTR + ++++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 135 SGFRSALTRTLNTFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 194

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 195 SEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAG 254

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNV
Sbjct: 255 LPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 305


>gi|164456749|dbj|BAF97867.1| gyrase B subunit [Vibrio neonatus]
          Length = 278

 Score =  207 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 142/280 (50%), Positives = 200/280 (71%), Gaps = 3/280 (1%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LS  + L I R G I+  ++ +G    PL   G   + TGTE+ F PS + FS  +F YD
Sbjct: 1   LSKKVTLTIHRGGKIHTQTYKHGEPQAPLKAVGDT-DKTGTEIRFWPSEETFSNIEFYYD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I+L+D+R  E +     ++GGI+AFV +L+ +K P++Q     
Sbjct: 60  ILAKRLRELSFLNSGVSINLVDER-VEDKSDHFMFEGGIKAFVEHLNTNKTPIIQKIFYF 118

Query: 251 QGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
              R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR + ++++K   
Sbjct: 119 DIEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNTFMDKEGF 178

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
           SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L 
Sbjct: 179 SKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLV 238

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           E+P EAKI+  K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 239 ENPGEAKIVCGKIIDAARAREAARKAREMTRRKGALDLAG 278


>gi|219963092|gb|ACL68134.1| DNA gyrase subunit B [Xenorhabdus poinarii]
          Length = 287

 Score =  207 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 153/290 (52%), Positives = 206/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++  GI  +PL V G     TGT V F PS + F     F YD L  RLRELSFL
Sbjct: 1   KVHEQTYHLGIPQSPLKVVGDTE-QTGTTVRFWPSMETFKVNTAFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+         Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRTNTE--DHFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ ENV CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENVYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP +SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPARSELYLVEG 287


>gi|291196147|emb|CBG14438.1| DNA gyrase subunit B [Pseudomonas congelans]
          Length = 266

 Score =  207 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 181/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS++ F  
Sbjct: 1   VSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 EVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|328472404|gb|EGF43271.1| DNA gyrase subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 162

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 76/162 (46%), Positives = 105/162 (64%), Gaps = 2/162 (1%)

Query: 41  LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
           +HH+++E++DN IDE+L G+A  I V +N D S TV+D+GRGIP D+  + G  A E + 
Sbjct: 1   MHHLVWEIIDNGIDEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQAKTGRPALETVY 60

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160
           T LHAGGKF    YKVSGGLHGVG SVVNALS+ L + + R G  Y + F+ G ++ P+ 
Sbjct: 61  TVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTNLDVTVVRGGKRYYIDFVRGKVNTPMK 120

Query: 161 VTGSAG-NDTGTEVTFLPSSDIFSVQDFNYDTLQ-HRLRELS 200
             G A  ++ GT+V F P  DIF+      D +   R+REL+
Sbjct: 121 ELGPAPEHEHGTKVHFQPDPDIFTETTTFDDKVLTTRIRELA 162


>gi|116327080|ref|YP_796800.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116332263|ref|YP_801981.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119824|gb|ABJ77867.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125952|gb|ABJ77223.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 711

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 131/680 (19%), Positives = 250/680 (36%), Gaps = 120/680 (17%)

Query: 1   MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMI-------YEVL- 49
           MS     ++  S    + + L  ++ V+ R  M++G     +   H         YE++ 
Sbjct: 1   MSADKTKVKEKSSQERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVH 60

Query: 50  -------------D----NAIDESLEGYADI----------ITVTLNMDGS-CTVSDNGR 81
                        D    NA+DE  +   D           + V L+ D    T++DNGR
Sbjct: 61  EELEDVPAKLKCLDEACMNAVDEYRKNQKDKTIPEKDKMSKLIVQLSSDRKCVTITDNGR 120

Query: 82  GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK-VSGGLHGVGVSVVNALSSWLKL--- 137
           GIP         + AE +   L  G  F+    +    G +GVG+S+V  +S++ K+   
Sbjct: 121 GIP--------AANAEGVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTV 172

Query: 138 ----------RIKREGNI-----------------YEMS---FINGILDNP--------- 158
                      +  +                    Y      F +  L            
Sbjct: 173 NNGSSFKKLFTVHDDVKKQIRSYKLSKEDIERVFLYFDEHGKFTDCNLLTKDQIDKLNSL 232

Query: 159 LVVT-------GSAGNDTGTEVTFLPSSDIFSVQDFNY--DTLQHRLRELSFLNSSVQIS 209
           L  T        ++  D GT V F  +   F+  D ++  D ++  L++++  N  +++ 
Sbjct: 233 LKKTNMQESIEKASKEDHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDIAMTNPGLEVQ 292

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
            + K   E  +                 +       S  ++      +            
Sbjct: 293 FVFKGKKEKYKFKKGLDEIFSHSDLVYYKMDYTAPGSASQLHLETYLVI----------G 342

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
               L + N+I    GG+ +  L + +  ++    +     KK K S   +D R  F   
Sbjct: 343 QNKNLTWVNSIFAPQGGSAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMY 402

Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389
           ++ ++ +PRF SQ K  L++      +   + + +   LE+   +  ++ +  L      
Sbjct: 403 VNARLLNPRFKSQDKSYLIND-----LNEDIRNAVDKHLEKFIKKTGLLEEIKLQMEKRT 457

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449
                       K    + ++P  +    +       LF+ EGDSA    +  R+ +   
Sbjct: 458 QLKAFEDAQKGLKKASRM-NIPKLMPPTGKPGDPGRVLFVAEGDSAIAGLRPARNPKLHG 516

Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509
           + PLRGK LN +     K ++++E+  ++  +G  + Q    +++L Y K+ I+TDAD D
Sbjct: 517 LFPLRGKPLNCKGLSIAKAIANEELKNIVAIVGLPLDQKVKSVDELNYDKVSIITDADFD 576

Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-----TRGKSLQYVKDEESLEDYLI 564
           G  IR+L+L+FF+   P L   GF++I   PLY +      + K   +  D++  ED + 
Sbjct: 577 GYAIRSLMLSFFYEYWPELFELGFIHISSAPLYEVDVKFGDKKKETVFCIDDKDYEDLIK 636

Query: 565 NQSLSEEIELFCDSKGVISK 584
               +            + +
Sbjct: 637 RVEKNGGEITRKKRNKGLGE 656


>gi|66271264|gb|AAY43845.1| DNA gyrase subunit B [Vibrio sp. Vib 391]
          Length = 253

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 122/253 (48%), Positives = 179/253 (70%), Gaps = 3/253 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +F+
Sbjct: 1   NALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++   
Sbjct: 60  YDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIF 118

Query: 249 RIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K 
Sbjct: 119 HFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKE 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +
Sbjct: 179 GFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLSEF 238

Query: 368 LEEHPLEAKIIVK 380
           L E+P EAK++  
Sbjct: 239 LIENPTEAKMVCS 251


>gi|161783789|gb|ABX79467.1| GyrB [Streptomyces sp. AB3]
          Length = 344

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 143/344 (41%), Positives = 204/344 (59%), Gaps = 20/344 (5%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201
           +G+ +   +  G+   PL     A   TGT VTF    DIF   D++++TL  R +E++F
Sbjct: 2   DGHRWTQDYKLGVPTAPLXR-HEATEXTGTSVTFWADGDIFETTDYSFETLSRRFQEMAF 60

Query: 202 LNSSVQISLIDKRS----------------PEPREITMFYKGGIEAFVSY-LDRHKKPLM 244
           LN  ++I+L D+R                    + ++  Y+GGI  F  Y   R  + + 
Sbjct: 61  LNKGLRINLTDERESAKATAGADEAGEDEKHXVKSVSYHYEGGIVDFXKYLNSRKGEVVH 120

Query: 245 QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
            + I +       ++S+ +AM+WN GY E V  F N I   + GTH  G  +ALT  I  
Sbjct: 121 PTVIXLXAEDRERHLSLXVAMQWNGGYTEGVYSFANIIHTHEXGTHEEGFXAALTSLINK 180

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y       +     + GDD REG T+++S+K+ +P+F  QTK KL ++EV++ V+  V +
Sbjct: 181 YARDKKLLRDKDDXLTGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYE 240

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ WL+ +P EA  IV+K + A+  R AAR+ARDLTRRKG+L+ ASLPGKL+DC   DP
Sbjct: 241 HLADWLDRNPNEAADIVRKGIAAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDP 300

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
            K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+AR D
Sbjct: 301 TKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKARID 344


>gi|219944536|gb|ACL55042.1| DNA gyrase B subunit [Dietzia cinnamea]
          Length = 440

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 172/267 (64%)

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y  G++ +V  +++ K  +  + +  +G      +++AM+WN GY E+V  F N I  
Sbjct: 171 FHYPDGLKDYVKAINKSKTAIHPTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINT 230

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y       K+   ++ GDD REG  +V+S K+ DP+F  Q
Sbjct: 231 HEGGTHEEGFRAALTSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQ 290

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++EV+  V+  V + +  W E +P EAK+IV K + +S  R AAR+AR++ RRK
Sbjct: 291 TKTKLGNTEVKGFVQRQVAEHVGHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRK 350

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
              DI  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE+
Sbjct: 351 SATDIGGLPGKLADCRSKDPSKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEK 410

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDS 489
           +R DK+L + E+  +ITALGTGI ++ 
Sbjct: 411 SRIDKVLKNAEVQAIITALGTGIHEEF 437


>gi|219536326|gb|ACL18068.1| DNA gyrase subunit B [Pseudomonas sp. TLC13:19-20cm-1G]
          Length = 279

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 139/281 (49%), Positives = 196/281 (69%), Gaps = 3/281 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TGT++ F PS   F  
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTGTQIHFKPSDLTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405
           S +L E+P EAK++V K++DA+  R+AAR+AR++TRRKG L
Sbjct: 238 SDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGAL 278


>gi|291196157|emb|CBG14448.1| DNA gyrase subunit B [Pseudomonas fragi]
          Length = 266

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 127/260 (48%), Positives = 180/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F  
Sbjct: 1   VSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTQIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVDYLNTNKNPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKFF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L EHP EAK+IV K++D
Sbjct: 238 SDFLLEHPNEAKLIVGKMID 257


>gi|219944538|gb|ACL55043.1| DNA gyrase B subunit [Dietzia papillomatosis]
          Length = 440

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 172/267 (64%)

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y  G++ +V  +++ K  +  + +  +G      +++AM+WN GY E+V  F N I  
Sbjct: 171 FHYPDGLKDYVKAINKSKTAIHPTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINT 230

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y       K+   ++ GDD REG  +V+S K+ DP+F  Q
Sbjct: 231 HEGGTHEEGFRAALTSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQ 290

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++EV+  V+  V + +  W E +P EAK+IV K + +S  R AAR+AR++ RRK
Sbjct: 291 TKTKLGNTEVKGFVQRQVAEHVGHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRK 350

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
              DI  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE+
Sbjct: 351 SATDIGGLPGKLADCRSKDPSKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEK 410

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDS 489
           +R DK+L + E+  +ITALGTGI ++ 
Sbjct: 411 SRIDKVLKNAEVQAIITALGTGIHEEF 437


>gi|219963036|gb|ACL68106.1| DNA gyrase subunit B [Xenorhabdus hominickii]
 gi|219963038|gb|ACL68107.1| DNA gyrase subunit B [Xenorhabdus hominickii]
 gi|219963040|gb|ACL68108.1| DNA gyrase subunit B [Xenorhabdus hominickii]
          Length = 287

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 153/290 (52%), Positives = 209/290 (72%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+  +PL V G   + TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYCHGVPQSPLKVVGDTEH-TGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--NAEDHFHYEGGIKAFVEFLSRNKNPIHSNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|209408296|emb|CAP19833.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 279

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 140/282 (49%), Positives = 198/282 (70%), Gaps = 3/282 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS  L L I+REG ++E  + +G+   PL   G   + +GT++ F PSS+ F    
Sbjct: 1   VVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKPSSETFQNIH 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV+YL+ +K P+ + 
Sbjct: 60  FSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNKTPVNEV 117

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + SY+E+
Sbjct: 118 FHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSYIEQ 177

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +      
Sbjct: 178 EGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFGD 237

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +L EHP EAK +V K++DA+  R+AAR+AR++TRRKG LDIA
Sbjct: 238 FLLEHPGEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 279


>gi|291196197|emb|CBG14489.1| DNA gyrase subunit B [Pseudomonas migulae]
          Length = 266

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 180/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F  
Sbjct: 1   VSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|24216893|ref|NP_714374.1| DNA gyrase subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45659167|ref|YP_003253.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24198274|gb|AAN51392.1| DNA gyrase subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602413|gb|AAS71890.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 711

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 131/683 (19%), Positives = 257/683 (37%), Gaps = 126/683 (18%)

Query: 1   MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMI-------YEVL- 49
           MS     ++  S    + + L  ++ V+ R  M++G     +   H         YE++ 
Sbjct: 1   MSTDKTKVKEKSSQERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVH 60

Query: 50  -------------D----NAIDESLEGYADI----------ITVTLNMDGS-CTVSDNGR 81
                        D    NA+DE  +   D           + V L+ D    T++DNGR
Sbjct: 61  EELEDVPAKLKCLDEACMNAVDEYRKNQKDKSIPEKDKMSKLIVQLSSDRKCVTIADNGR 120

Query: 82  GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK-VSGGLHGVGVSVVNALSSWLKL--- 137
           GIP         + AE +   L  G  F+    +    G +GVG+S+V  +S++ K+   
Sbjct: 121 GIP--------ATNAEGVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTV 172

Query: 138 ----------RIKREGNIYEMSF---------------INGI-------------LDNPL 159
                      +  +      S+                +G                +PL
Sbjct: 173 NNGSSFKKLFTVHDDVKKQIRSYKLSKEDTERVFLYFDEHGKFTDCNLLTKDQIDKLSPL 232

Query: 160 VVT--------GSAGNDTGTEVTFLPSSDIFSVQDFNY--DTLQHRLRELSFLNSSVQIS 209
           +           ++  D GT V F  +   F+  D ++  D ++  L++++  N  +++ 
Sbjct: 233 LKKTNMQELIEKASKEDHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDIAMTNPGLEVQ 292

Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269
            + K   E  +                 +       S  ++      +            
Sbjct: 293 FVFKGKKEKYKFKKGLDEIFSHSDLVYYKMDYVAPGSASQLHLETYLVI----------G 342

Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329
               L + N+I    GG+ +  L + +  ++    +     KK K S   +D R  F   
Sbjct: 343 QNKNLTWVNSIFAPQGGSAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMY 402

Query: 330 LSIKMPDPRFSSQTKEKLVSS---EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386
           ++ ++ +PRF SQ K  L++    ++R+ V+  ++  +              +K  ++  
Sbjct: 403 VNARLLNPRFKSQDKSYLINDLNEDIRNAVDKHLDKFIKKTGLLEE------IKLQMEKR 456

Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446
               A   A+   ++   +   ++P  +    ++      LF+ EGDSA    +  R+ +
Sbjct: 457 TQLKAFEDAQKGLKKASRM---NIPKLMPPTGKQGDPGRVLFVAEGDSAIAGLRPARNPK 513

Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506
              + PLRGK LN +     K ++++E+  ++  +G  + Q    +++L Y K+ I+TDA
Sbjct: 514 LHGLFPLRGKPLNCKGLSIAKAIANEELKNIVAIVGLPLDQKVKSLDELNYEKVSIITDA 573

Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI-----TRGKSLQYVKDEESLED 561
           D DG  IR+L+L+FF+   P L   GF++I   PLY +      + K   +  D++  ED
Sbjct: 574 DFDGYAIRSLMLSFFYEYWPELFELGFIHISSAPLYEVDVKFGDKKKETIFCIDDKDYED 633

Query: 562 YLINQSLSEEIELFCDSKGVISK 584
            +                  + +
Sbjct: 634 LIKRVEKGGGEITRKKRNKGLGE 656


>gi|146189310|emb|CAL91123.1| DNA gyrase subunit beta [Ensifer adhaerens]
 gi|146189312|emb|CAL91124.1| DNA gyrase subunit beta [Ensifer adhaerens]
 gi|146189316|emb|CAL91126.1| DNA gyrase subunit beta [Ensifer adhaerens]
 gi|146189320|emb|CAL91128.1| DNA gyrase subunit beta [Ensifer adhaerens]
          Length = 224

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 141/224 (62%), Positives = 184/224 (82%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D  L VTG AG++TGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGSLAVTGDAGDETGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PSS+ F+  +F+Y+TL+HRLREL+FLNS V I L DKR  + R+  M Y+GG+EA+V+YL
Sbjct: 61  PSSETFTKTEFDYNTLEHRLRELAFLNSGVHIILTDKRHSDIRQDEMMYEGGLEAYVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+TSY + S  +K++K ++ G+DCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVTSYADTSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|281331636|emb|CAZ40012.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 237

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 161/239 (67%), Gaps = 3/239 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F PS 
Sbjct: 1   LHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPST-KRGTTLRFWPSV 59

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV +L +
Sbjct: 60  KAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVEHLAQ 118

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR
Sbjct: 119 LKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
            + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE
Sbjct: 179 VLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVE 237


>gi|223674706|gb|ACN13049.1| DNA gyrase subunit B [Erwinia billingiae]
          Length = 218

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 111/221 (50%), Positives = 151/221 (68%), Gaps = 4/221 (1%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALS  L+L I+REG ++   +++G+   PL VTG   + TGT V F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET-DLTGTRVRF 59

Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
            PS   F+   DF Y+ L  RLRELSFLNS V I L  +   + R+    Y+GGI+AFV 
Sbjct: 60  WPSHQTFTNVTDFEYEILAKRLRELSFLNSGVSIKL--EDKRDARQDHYHYEGGIKAFVE 117

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+
Sbjct: 118 YLNKNKTPIHPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRT 177

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+P
Sbjct: 178 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 218


>gi|146189314|emb|CAL91125.1| DNA gyrase subunit beta [Sinorhizobium xinjiangense]
 gi|146189326|emb|CAL91131.1| DNA gyrase subunit beta [Sinorhizobium xinjiangense]
          Length = 224

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 144/224 (64%), Positives = 180/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D  L +TG AG++TGTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGSLAITGDAGSETGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F++ TL+HRLREL+FLNS V+I L DKR  + R   M Y GG+EAFV+YL
Sbjct: 61  PSEQTFSKTEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDEMMYDGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S  +KK+K S+ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|291196246|emb|CBG14532.1| DNA gyrase subunit B [Pseudomonas salomonii]
          Length = 266

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|291196153|emb|CBG14444.1| DNA gyrase subunit B [Pseudomonas extremorientalis]
 gi|291196179|emb|CBG14471.1| DNA gyrase subunit B [Pseudomonas libanensis]
          Length = 266

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|291196205|emb|CBG14497.1| DNA gyrase subunit B [Pseudomonas nitroreducens]
          Length = 267

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 125/261 (47%), Positives = 178/261 (68%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG ++E  + +G+   PL   G     +GTEV F PS + F  
Sbjct: 1   VSVVNALSHELRLTIRREGKVWEQVYHHGVPQFPLRPVGDTE-GSGTEVHFKPSPETFHN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+R+ +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLRDERAGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q      Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 QVFHFNCQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            + +L E+P EAK +V K++D
Sbjct: 238 FADFLLENPNEAKAVVGKMID 258


>gi|291196143|emb|CBG14434.1| DNA gyrase subunit B [Pseudomonas cannabina]
          Length = 266

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 181/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D F  
Sbjct: 1   VSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSADTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 EVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|281331672|emb|CAZ40030.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 249

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 122/251 (48%), Positives = 164/251 (65%), Gaps = 3/251 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L + + + G+ Y+  F NG    PL     A    GT V F PS+  
Sbjct: 1   GVGVSVVNALSQKLLVDVFQNGSHYQQEFSNGAAVTPLAKL-EATTKRGTTVRFWPSTVA 59

Query: 182 FS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L + K
Sbjct: 60  FHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQLK 118

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL  + I + G  + I +++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR +
Sbjct: 119 TPLHPNVISVTGEHNGIVVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE+  
Sbjct: 179 NNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAF 238

Query: 361 NDGLSAWLEEH 371
              L  +L+E+
Sbjct: 239 GARLEEFLQEN 249


>gi|164456683|dbj|BAF97834.1| gyrase B subunit [Vibrio ichthyoenteri]
          Length = 259

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 123/261 (47%), Positives = 180/261 (68%), Gaps = 4/261 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP-SSDIFSVQDFN 188
           ALS  ++L I R G+++  ++ +G    PL V       TGT++ F P      +V +F+
Sbjct: 1   ALSEKVELTIWRGGHVHTQTYCHGEPQAPLAVIADTE-KTGTKIRFWPSDQTFTNVLEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I LID+R  E +     ++GGI+AFV +L+ +K P++    
Sbjct: 60  YDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFEFEGGIQAFVEHLNTNKTPIIDKIF 118

Query: 249 RIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K 
Sbjct: 119 HFDFEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKE 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L+ +
Sbjct: 179 GFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLAEF 238

Query: 368 LEEHPLEAKIIVKKVLDASMV 388
           L E+P EAK++  K++DA+  
Sbjct: 239 LIENPTEAKMVCSKIIDAARA 259


>gi|291196125|emb|CBG14416.1| DNA gyrase subunit B [Pseudomonas anguilliseptica]
          Length = 266

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 180/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L I+R G I+E ++++G+   P+   G + + TGT++ F PS + F+ 
Sbjct: 1   VSVVNALSKELVLTIRRSGKIWEQTYVHGVPTAPIATVGDS-DTTGTQIHFKPSEETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGILLKDERSGKE--ELFKYEGGLRAFVEYLNHNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+
Sbjct: 118 QVFHFTVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNAYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|164456695|dbj|BAF97840.1| gyrase B subunit [Vibrio mimicus]
          Length = 254

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 126/256 (49%), Positives = 179/256 (69%), Gaps = 3/256 (1%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
            + L I R G I+  ++ +G+   PL V G     TGT V F PS+  F+  +F+YD L 
Sbjct: 1   KVLLTIYRGGKIHTQTYHHGVPQAPLSVVGETE-RTGTTVRFWPSAQTFTNIEFHYDILA 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV++L+R+K P+ +        
Sbjct: 60  KRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQE 118

Query: 254 RDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
           R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K   SKK
Sbjct: 119 REDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKK 178

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P
Sbjct: 179 AQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENP 238

Query: 373 LEAKIIVKKVLDASMV 388
            EAK +  K++DA+  
Sbjct: 239 SEAKNVCSKIIDAARA 254


>gi|291196238|emb|CBG14524.1| DNA gyrase subunit B [Pseudomonas psychrotolerans]
          Length = 267

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 127/261 (48%), Positives = 182/261 (69%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R G ++E  +++G+   PL V G   + TGT+V F PS++ FS 
Sbjct: 1   VSVVNALSEELRLTIRRAGQVWEQVYVHGVPQAPLAVIGET-DTTGTQVHFKPSAETFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IQFSWDILAKRIRELSFLNSGVGIVLRDERSGKE--ELFKYEGGLRAFVDYLNTNKTAVN 117

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 EVFHFQVQRDDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            S +L E+P EAK +V K++D
Sbjct: 238 FSDFLLENPNEAKAVVGKMID 258


>gi|291196127|emb|CBG14418.1| DNA gyrase subunit B [Pseudomonas antarctica]
          Length = 266

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 178/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS + F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSDETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|291196169|emb|CBG14460.1| DNA gyrase subunit B [Pseudomonas indica]
          Length = 266

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R G ++E  + +G+   PL   G   + TGTE+ F  S++ F+ 
Sbjct: 1   VSVVNALSEELRLTIRRSGKVWEQIYRHGVPQAPLAPVGDT-DGTGTEIHFKASAETFTN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGIVLRDERSGKE--ELFKYEGGLKAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+
Sbjct: 118 QVFHFNVQRDDGIGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           + +L E+P EAK +V K++D
Sbjct: 238 ADFLLENPNEAKAVVGKMID 257


>gi|291196193|emb|CBG14485.1| DNA gyrase subunit B [Pseudomonas meliae]
          Length = 266

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 126/260 (48%), Positives = 181/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D F  
Sbjct: 1   VSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSADTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|298112111|gb|ADI58440.1| DNA gyrase subunit B [Pseudomonas viridiflava]
          Length = 213

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 104/216 (48%), Positives = 147/216 (68%), Gaps = 3/216 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-D 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+G
Sbjct: 60  TTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIMLKDERSGKE--ELFKYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+ AFV YL+ +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGT
Sbjct: 118 GLRAFVEYLNTNKTPVNEVFHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           HL G R ALTR + +Y+E+   +KK K +  GDD R
Sbjct: 178 HLVGFRFALTRNLNNYIEQEGLAKKHKVATTGDDAR 213


>gi|291196248|emb|CBG14534.1| DNA gyrase subunit B [Pseudomonas simiae]
          Length = 266

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSE-TTGTQIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|58415304|emb|CAH04910.1| DNA gyrase subunit B [Curtobacterium flaccumfaciens pv.
           poinsettiae]
 gi|117675841|emb|CAL69191.1| DNA gyrase subunit B [Curtobacterium flaccumfaciens pv.
           poinsettiae]
          Length = 299

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 130/299 (43%), Positives = 192/299 (64%), Gaps = 8/299 (2%)

Query: 196 LRELSFLNSSVQISLI----DKRSPEPREITMFYKGGIEAFVSYLDRHKKPL--MQSPIR 249
            ++++FLN  ++I+L      +   E R  T  Y+ G+  +V +++  KK        I 
Sbjct: 1   FQQMAFLNKGLRINLRDERAPEEGEEARNDTFMYERGLADYVEFINAQKKADLVHPDVIG 60

Query: 250 IQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +    +  I++++AM+WN  Y E+V  F N I   +GGTH  G R+ALT  +  Y  ++
Sbjct: 61  FESEDPDRKIALEVAMQWNTSYQESVHTFANTINTHEGGTHEEGFRAALTTLVNRYAREA 120

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E +S V+  V   L+ W
Sbjct: 121 KIIKEKDDNLTGDDIREGLTAVISVKLGEPQFEGQTKTKLGNTEAKSFVQRVVGTELTHW 180

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
            E +P +A+ +V+K + AS  R AAR+AR+ TRRKG+L+   +PGKL DC  +DP  SE+
Sbjct: 181 FESNPTQARDVVRKAIQASQARLAARKARETTRRKGLLESGGMPGKLKDCQSKDPTLSEI 240

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           F+VEGDSAGGSA QGR+   QAILPLRGKILNVE+AR D+ L++QEI ++ITA G GIG
Sbjct: 241 FMVEGDSAGGSAVQGRNPMTQAILPLRGKILNVEKARLDRALANQEIQSMITAFGAGIG 299


>gi|291196149|emb|CBG14440.1| DNA gyrase subunit B [Pseudomonas costantinii]
          Length = 266

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 178/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS + F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFKPSDETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|195934648|gb|ACG58683.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. kayaii]
          Length = 287

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 151/290 (52%), Positives = 208/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I LIDK +    E    Y+GGI+AFV +L+++K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLIDKHT--NIEDHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|298112101|gb|ADI58435.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112103|gb|ADI58436.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112105|gb|ADI58437.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112107|gb|ADI58438.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112109|gb|ADI58439.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112113|gb|ADI58441.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112115|gb|ADI58442.1| DNA gyrase subunit B [Pseudomonas viridiflava]
          Length = 213

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 105/216 (48%), Positives = 148/216 (68%), Gaps = 3/216 (1%)

Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167
           KF+  SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-D 59

Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            TGT++ F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+G
Sbjct: 60  TTGTQIHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIMLKDERSGKE--ELFKYEG 117

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+ AFV YL+ +K P+ +         D + +++A++WND ++EN+LCFTNNIPQ+DGGT
Sbjct: 118 GLRAFVEYLNTNKTPVNEVFHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGT 177

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           HL G RSALTR + +Y+E+   +KK K +  GDD R
Sbjct: 178 HLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAR 213


>gi|291196155|emb|CBG14446.1| DNA gyrase subunit B [Pseudomonas flavescens]
          Length = 266

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 181/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L I+R G I+E ++++G+   P+   G + + TGT++ F PS+D F+ 
Sbjct: 1   VSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPIAAVGDS-DTTGTQIHFKPSADTFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+R+ +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGILLKDERTAKE--ELFKYEGGLRAFVEYLNVNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+
Sbjct: 118 QVFHFSVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|291196228|emb|CBG14515.1| DNA gyrase subunit B [Pseudomonas peli]
          Length = 266

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 128/260 (49%), Positives = 181/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L I+R G I+E ++I+G+   P+   G + + TGT++ F PS D F+ 
Sbjct: 1   VSVVNALSKELILTIRRSGKIWEQTYIHGVPQAPIAAVGDS-DVTGTQIHFKPSEDTFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGILLKDERSGKE--ELFKYEGGLRAFVEYLNHNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+
Sbjct: 118 QVFHFTVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNAYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|219963086|gb|ACL68131.1| DNA gyrase subunit B [Xenorhabdus stockiae]
          Length = 287

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 155/290 (53%), Positives = 209/290 (72%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+  +PL V G     TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYQHGVPQSPLKVVGDTE-QTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV YL R+K P+ Q+       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--NAEDLFHYEGGIKAFVEYLSRNKNPIHQNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHSELYLVEG 287


>gi|219944530|gb|ACL55039.1| DNA gyrase B subunit [Dietzia sp. W5004]
          Length = 441

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 124/267 (46%), Positives = 174/267 (65%)

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y GG++ +V  +++ K  + Q+ +  +G      +++AM+WN GY E+V  F N I  
Sbjct: 172 FHYPGGLKDYVKAINKSKTAIHQTILYFEGKGTGHEVEVAMQWNSGYWESVHTFANTINT 231

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y       K+   ++ GDD REG  +V+S K+ DP+F  Q
Sbjct: 232 HEGGTHEEGFRAALTSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQ 291

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++EV+  V+  V + +  W E +P EAK+IV K + +S  R AAR+AR++ RRK
Sbjct: 292 TKTKLGNTEVKGFVQRQVTEHVGHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRK 351

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
              DI  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE+
Sbjct: 352 SATDIGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEK 411

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDS 489
           +R DK+L + E+  +ITALGTGI ++ 
Sbjct: 412 SRIDKVLKNAEVQAIITALGTGIHEEF 438


>gi|195934652|gb|ACG58685.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. kayaii]
          Length = 287

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 151/290 (52%), Positives = 207/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I LIDK +    E    Y+GGI+AFV +L+++K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLIDKHT--NIEDHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKNKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|300490564|gb|ADK22866.1| DNA gyrase B subunit [Vibrio communis]
          Length = 246

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 120/247 (48%), Positives = 175/247 (70%), Gaps = 3/247 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +F
Sbjct: 1   VNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++  
Sbjct: 60  HYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKI 118

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K
Sbjct: 119 FHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS 
Sbjct: 179 EGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSE 238

Query: 367 WLEEHPL 373
           +L E+P 
Sbjct: 239 FLIENPT 245


>gi|315466378|emb|CBY84401.1| DNA gyrase beta subunit [Vibrio sp. PP-203]
 gi|315466380|emb|CBY84402.1| DNA gyrase beta subunit [Vibrio sp. PP-200]
          Length = 265

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 166/264 (62%), Positives = 217/264 (82%), Gaps = 1/264 (0%)

Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282
            ++GGI AFV +L+ +K P++         R++ IS+++AM+WNDG+ EN+ CFTNNIPQ
Sbjct: 1   MFEGGIRAFVDHLNTNKTPIIDKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQ 60

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           +DGGTHL+G R+ALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQ
Sbjct: 61  RDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAVVSVKVPDPKFSSQ 120

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK+KLVSSEV+S VES + + LS +L E+P EAK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 121 TKDKLVSSEVKSAVESAMGEKLSEFLVENPAEAKMVCSKIIDAARAREAARKAREMTRRK 180

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           G LD+A LPGKLADC E+DP  SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+
Sbjct: 181 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 240

Query: 463 ARFDKMLSSQEIGTLITALGTGIG 486
           ARFDKMLSSQE+ TLITALG GIG
Sbjct: 241 ARFDKMLSSQEVATLITALGCGIG 264


>gi|251736963|gb|ACT10341.1| DNA gyrase subunit B [Pseudomonas sp. WR3-19]
          Length = 241

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/244 (48%), Positives = 167/244 (68%), Gaps = 3/244 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ 
Sbjct: 1   GVGVSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFKPSAET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  V 
Sbjct: 178 TYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEVG 237

Query: 362 DGLS 365
              S
Sbjct: 238 KYFS 241


>gi|291196260|emb|CBG14546.1| DNA gyrase subunit B [Pseudomonas veronii]
          Length = 266

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 126/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ V G +   TGT++ F PS + F  
Sbjct: 1   VSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKVVGESE-TTGTQIHFRPSDETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|291196135|emb|CBG14426.1| DNA gyrase subunit B [Pseudomonas avellanae]
          Length = 266

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 126/260 (48%), Positives = 181/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT++ F PS+D F  
Sbjct: 1   VSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKPSADTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 EVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|195934646|gb|ACG58682.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. akhurstii]
 gi|195934670|gb|ACG58694.1| DNA gyrase subunit B [Photorhabdus luminescens subsp.
           caribbeanensis]
 gi|195934672|gb|ACG58695.1| DNA gyrase subunit B [Photorhabdus luminescens subsp.
           caribbeanensis]
          Length = 287

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 151/290 (52%), Positives = 208/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I LIDKR+         Y+GGI+AFV +L+++K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLIDKRTNTE--DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|300490562|gb|ADK22865.1| DNA gyrase B subunit [Vibrio communis]
 gi|300490566|gb|ADK22867.1| DNA gyrase B subunit [Vibrio communis]
 gi|300490568|gb|ADK22868.1| DNA gyrase B subunit [Vibrio communis]
          Length = 245

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 120/247 (48%), Positives = 175/247 (70%), Gaps = 3/247 (1%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           VNALS  + L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ F+  +F
Sbjct: 1   VNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNIEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++  
Sbjct: 60  HYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKI 118

Query: 248 IRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K
Sbjct: 119 FHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDK 178

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
              SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS 
Sbjct: 179 EGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSE 238

Query: 367 WLEEHPL 373
           +L E+P 
Sbjct: 239 FLIENPT 245


>gi|291196145|emb|CBG14436.1| DNA gyrase subunit B [Pseudomonas cedrina]
 gi|291196165|emb|CBG14456.1| DNA gyrase subunit B [Pseudomonas grimontii]
          Length = 266

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS+D F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKPSADTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|219963082|gb|ACL68129.1| DNA gyrase subunit B [Xenorhabdus innexi]
 gi|219963084|gb|ACL68130.1| DNA gyrase subunit B [Xenorhabdus innexi]
          Length = 287

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 154/290 (53%), Positives = 210/290 (72%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+  +PL + G     TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYQHGVPQSPLKIVGDTE-QTGTTVRFWPSMDTFKITTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV YL R+K P+ Q+       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--SAEDLFHYEGGIKAFVEYLSRNKNPIHQNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP +SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAQSELYLVEG 287


>gi|291196217|emb|CBG14509.1| DNA gyrase subunit B [Pseudomonas panacis]
          Length = 266

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS+D F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSADTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|164456713|dbj|BAF97849.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 256

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 127/258 (49%), Positives = 184/258 (71%), Gaps = 3/258 (1%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  + L I R G+I+  ++ +G  + PL V G   + TGT++ F PS++ FS  +F+YD 
Sbjct: 1   SEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFSNTEFHYDI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I LID+R  + +     Y+GGI+AFV +L+ +K P+++      
Sbjct: 60  LAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQHLNTNKTPIIEKIFHFD 118

Query: 252 GSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
             R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   S
Sbjct: 119 LEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFS 178

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E
Sbjct: 179 KKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVE 238

Query: 371 HPLEAKIIVKKVLDASMV 388
           +P EAK++  K++DA+  
Sbjct: 239 NPSEAKMVCSKIIDAARA 256


>gi|146263028|gb|ABQ15284.1| GyrB [Yersinia enterocolitica subsp. enterocolitica]
 gi|146263030|gb|ABQ15285.1| GyrB [Yersinia enterocolitica subsp. enterocolitica]
 gi|146263032|gb|ABQ15286.1| GyrB [Yersinia enterocolitica]
          Length = 206

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 108/209 (51%), Positives = 142/209 (67%), Gaps = 4/209 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AF
Sbjct: 60  RFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           R+A+TR + SY++K   SKK K S  GDD
Sbjct: 178 RTAMTRTLNSYMDKEGYSKKAKISATGDD 206


>gi|146263046|gb|ABQ15293.1| GyrB [Yersinia massiliensis]
 gi|146263052|gb|ABQ15296.1| GyrB [Yersinia massiliensis]
          Length = 206

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/209 (53%), Positives = 145/209 (69%), Gaps = 4/209 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F +  +F Y+TL  RLRELSFLNS V I L DKR+   RE    Y+GGI+AF
Sbjct: 60  RFWPSFETFTNNTEFQYETLAKRLRELSFLNSGVSIKLRDKRND--REDHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNKNKTPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           R+A+TR + SY++K   SKK K S  GDD
Sbjct: 178 RTAMTRTLNSYMDKEGYSKKAKISATGDD 206


>gi|291196181|emb|CBG14473.1| DNA gyrase subunit B [Pseudomonas lini]
          Length = 266

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F  
Sbjct: 1   VSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|169248033|gb|ACA51800.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 303

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 167/289 (57%), Positives = 220/289 (76%), Gaps = 3/289 (1%)

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           ++ F PS   F+  +F Y+ L  RLRELSFLNS V I L D R  E +     ++GGI+A
Sbjct: 16  KIRFWPSDQTFTNVEFVYEILAKRLRELSFLNSGVSIILQDMR-EEDKSDHFMFEGGIQA 74

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           FV++L+R+K P+ Q        R    I +++AM+WND Y EN+ C+TNNIPQ+DGG HL
Sbjct: 75  FVTHLNRNKTPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHL 134

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
           SG RSALTR + S+++K   SKK K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVS
Sbjct: 135 SGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 194

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           SEV+S VES +N+ L+ +L E+P EAK++  K++DA+  R+AAR+AR++TRRKG LDIA 
Sbjct: 195 SEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAG 254

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKIL
Sbjct: 255 LPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 303


>gi|195934658|gb|ACG58688.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. kayaii]
          Length = 287

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 209/290 (72%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I LIDKR+    E    Y+GGI+AFV +L+++K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLIDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|219963042|gb|ACL68109.1| DNA gyrase subunit B [Xenorhabdus miraniensis]
          Length = 287

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 206/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++  G+   PL V G     TGT V F PS + F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYHMGVPQAPLRVVGDTE-QTGTTVRFWPSMETFKVNTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--NAEDLFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|251736967|gb|ACT10343.1| DNA gyrase subunit B [Pseudomonas sp. WR4-40]
          Length = 240

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 118/243 (48%), Positives = 166/243 (68%), Gaps = 3/243 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ 
Sbjct: 1   GVGVSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFKPSAET 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  V 
Sbjct: 178 TYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEVG 237

Query: 362 DGL 364
              
Sbjct: 238 KYF 240


>gi|291196236|emb|CBG14522.1| DNA gyrase subunit B [Pseudomonas psychrophila]
          Length = 266

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 126/260 (48%), Positives = 178/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS   F  
Sbjct: 1   VSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTQIHFKPSDQTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVDYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFSVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRFF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK+IV K++D
Sbjct: 238 SDFLLENPNEAKLIVGKMID 257


>gi|291196207|emb|CBG14499.1| DNA gyrase subunit B [Pseudomonas orientalis]
          Length = 266

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS+D F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSE-STGTQIHFKPSADTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|195934644|gb|ACG58681.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. asymbiotica]
          Length = 287

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 150/290 (51%), Positives = 208/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL + G     TGT V F PS D F +  +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSPLKIVGETE-QTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I LIDKR+         Y+GGI+AFV +L+++K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLIDKRTNTE--DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|304415666|gb|ADM30939.1| gyrase B subunit [Vibrio sp. MSSRF60]
 gi|304415668|gb|ADM30940.1| gyrase B subunit [Vibrio sp. MSSRF64]
          Length = 267

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 129/256 (50%), Positives = 182/256 (71%), Gaps = 3/256 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  + L I R G I+  ++ +G+   PL V G     TGT V F PS+D F+  +F+Y
Sbjct: 1   ALSEKVLLTIYRGGQIHTQTYHHGVPQAPLSVVGDTE-KTGTTVRFWPSADTFTNIEFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V I L+D+R  E ++    Y+GGI+AFV++L+R+K P+ +    
Sbjct: 60  DILAKRLRELSFLNSGVSIKLVDER-EEDKQDHFMYEGGIQAFVTHLNRNKTPIHEKVFH 118

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               R++ IS+++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R+ALTR + +Y++K  
Sbjct: 119 FNAEREDGISVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMDKEG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L+ +L
Sbjct: 179 YSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLNEFL 238

Query: 369 EEHPLEAKIIVKKVLD 384
            EHP EAK++  K++D
Sbjct: 239 AEHPSEAKMVCSKIID 254


>gi|195934668|gb|ACG58693.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii]
          Length = 287

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 208/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F    +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRDNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I LIDKR+    E    Y+GGI+AFV +L+++K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLIDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|58415314|emb|CAH04915.1| DNA gyrase subunit B [Plantibacter flavus]
          Length = 318

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 130/315 (41%), Positives = 197/315 (62%), Gaps = 20/315 (6%)

Query: 195 RLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIEAFVSYLDR 238
           R ++++FLN  ++I L D+R                    R+   FY+ G+E +V YL++
Sbjct: 2   RFQQMAFLNKGLRIELADERPLRDAIEAEDVDDNSAAHSQRKDVFFYERGLEDYVEYLNK 61

Query: 239 HK--KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            K  + +    I  +       I++++AM+W   Y+E+V  + N I   +GGTH  G R+
Sbjct: 62  AKRAELVHDEIISFESENTERKIALEVAMQWTTAYNESVHTYANTINTHEGGTHEEGFRA 121

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALT  +  Y  +    K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E ++
Sbjct: 122 ALTTLVNRYAREKGILKEKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAKA 181

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+  V++ L+ W + +P +AK I++K L A+  R AAR+AR+  RRKG+L+   +PGKL
Sbjct: 182 FVQKVVSEQLNDWFDRNPNQAKEIIRKALQAATARLAARKARETARRKGLLEGGGMPGKL 241

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DC  +DP  SE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L++ E+
Sbjct: 242 KDCQSKDPSLSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALANNEV 301

Query: 475 GTLITALGTGIGQDS 489
             +ITA G GIG+D 
Sbjct: 302 QAMITAFGAGIGEDF 316


>gi|302122563|gb|ADK92949.1| topoisomerase IV subunit B [Geobacillus stearothermophilus]
          Length = 273

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 168/277 (60%), Gaps = 7/277 (2%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALS WL + I R+G +Y   F +G      L   G   + TGT + F P   IF
Sbjct: 1   GASVVNALSEWLVVTIHRDGFMYRQRFEHGGRPVTTLEKIG-TTDKTGTIIHFKPDPTIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
           S   FNY+TL  RLRE +FL   ++I L+D+R+         Y+ GIEAFV+YL+  K  
Sbjct: 60  STTVFNYETLSERLRESAFLLKGLKIELVDERTG--MREVFHYENGIEAFVAYLNEEKDV 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           L    +   G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR    
Sbjct: 118 LHP-VVYFSGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNE 176

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFV 360
           Y  +    K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V++ V
Sbjct: 177 YARRVGLLKEKDKNLEGXDIREGLSAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVV 236

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           ++ L+ +L+E+P  +  ++KK + A   R+AAR+AR+
Sbjct: 237 SEQLTYFLQENPDVSTXLIKKAIRAYQAREAARKARE 273


>gi|219963064|gb|ACL68120.1| DNA gyrase subunit B [Xenorhabdus bovienii]
          Length = 287

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 150/290 (51%), Positives = 206/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+   PL + G     TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYQHGVPQAPLKMVGDTE-QTGTTVRFWPSMDTFKLNTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--NAEDHFHYEGGIKAFVEFLSRNKTPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGG HL G R+A+TR + SY++K   +KK K +  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMDKEGYNKKSKVNATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|291196173|emb|CBG14464.1| DNA gyrase subunit B [Pseudomonas jinjuensis]
          Length = 267

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 126/261 (48%), Positives = 180/261 (68%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG ++E  + +G+   PL   G   + +GTEV F PS + F  
Sbjct: 1   VSVVNALSHELRLTIRREGKVWEQLYHHGVPQFPLRPVGDT-DGSGTEVHFKPSPETFHN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+R+ +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERAGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 QVFHFNMQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IESEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            + +L E+P EAK +V K++D
Sbjct: 238 FADFLLENPNEAKAVVGKMID 258


>gi|281331934|emb|CAZ39962.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 236

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/238 (50%), Positives = 158/238 (66%), Gaps = 3/238 (1%)

Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178
           GLHGVGVSVVNALS  L + + + G  Y+  F NG    PL     +    GT V F PS
Sbjct: 1   GLHGVGVSVVNALSQKLLVDVFQGGFHYQQEFSNGAAVTPLAKL-ESTTKRGTTVRFWPS 59

Query: 179 SDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
           +  F    +++YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L 
Sbjct: 60  TVAFHDNVEYHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLA 118

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + K PL  + I + G  +NI +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALT
Sbjct: 119 QLKTPLHPNVISVTGEHNNIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALT 178

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355
           R + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  
Sbjct: 179 RVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 236


>gi|291196187|emb|CBG14478.1| DNA gyrase subunit B [Pseudomonas luteola]
          Length = 267

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 128/261 (49%), Positives = 183/261 (70%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R G ++E  +++G+   PL   G   + TGT++ F PS++ FS 
Sbjct: 1   VSVVNALSEELRLTIRRLGQVWEQVYVHGVPQEPLKAIGET-DGTGTQIHFKPSAETFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGILLRDERSGKE--EMFKYEGGLRAFVDYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q      G R++ I +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 QVFHFNVGDREDGIGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNTY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKQ 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            + +L E+P EAK +V K++D
Sbjct: 238 FADFLLENPGEAKAVVGKMID 258


>gi|291196252|emb|CBG14538.1| DNA gyrase subunit B [Pseudomonas tremae]
          Length = 266

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 181/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++ F PS++ F  
Sbjct: 1   VSVVNALSEILLLTVRRSGKIWEQTYVHGVPKEPMKIVGES-DTTGTQIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILTKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|195934650|gb|ACG58684.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. kayaii]
          Length = 287

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 150/290 (51%), Positives = 206/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I LIDK +    E    Y+GGI+AFV +L+++K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLIDKHT--NIEDHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK KLV SEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKNKLVPSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|146189318|emb|CAL91127.1| DNA gyrase subunit beta [Ensifer adhaerens]
          Length = 224

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 140/224 (62%), Positives = 180/224 (80%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  LKL+I+R G I+EMSF +G+ D  L VTG AG +TGTEVTF+
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGALAVTGDAGTETGTEVTFM 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS   FS  +F+Y TL+HRLREL+FLNS V+I L DKR  + R   + Y+GG+EAFV+YL
Sbjct: 61  PSEQTFSKIEFDYATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDELMYEGGLEAFVAYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+TSY + S  +K++K ++ G+DCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVTSYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|291196139|emb|CBG14430.1| DNA gyrase subunit B [Pseudomonas borbori]
          Length = 266

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 182/260 (70%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G+I+E ++ +G+   P+ + G + + TGT++ F PS++ F+ 
Sbjct: 1   VSVVNALSEHLLLTVRRSGHIWEQTYSHGVPLEPMRIVGDS-DTTGTQIHFKPSAETFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNVNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+
Sbjct: 118 QVFHFSIQREDGIGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNAYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKHF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPGEAKAVVGKMID 257


>gi|251736961|gb|ACT10340.1| DNA gyrase subunit B [Pseudomonas sp. BR8-21]
          Length = 239

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 118/241 (48%), Positives = 166/241 (68%), Gaps = 3/241 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS+D 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKPSADT 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 TYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 237

Query: 362 D 362
            
Sbjct: 238 K 238


>gi|195934660|gb|ACG58689.1| DNA gyrase subunit B [Photorhabdus temperata subsp. temperata]
 gi|195934662|gb|ACG58690.1| DNA gyrase subunit B [Photorhabdus temperata subsp. temperata]
          Length = 287

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 210/290 (72%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    YKGGI+AFV +L+++K P+  +       +D+I +++A
Sbjct: 60  NSGVSIRLLDKRT--NIEDHFHYKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           ++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 LQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|219944532|gb|ACL55040.1| DNA gyrase B subunit [Dietzia sp. W5026]
          Length = 441

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 123/267 (46%), Positives = 173/267 (64%)

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y  G++ +V  +++ K  + Q+ +  +G      +++AM+WN GY E+V  F N I  
Sbjct: 172 FHYPDGLKDYVKAINKSKTAIHQTILYFEGKGTGHEVEVAMQWNSGYSESVHTFANTINT 231

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
            +GGTH  G R+ALT  +  Y       K+   ++ GDD REG  +V+S K+ DP+F  Q
Sbjct: 232 HEGGTHEEGFRAALTSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQ 291

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TK KL ++EV+  V+  V + +  W E +P EAK+IV K + +S  R AAR+AR++ RRK
Sbjct: 292 TKTKLGNTEVKGFVQRQVTEHVGHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRK 351

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
              DI  LPGKLADC  +DP KSEL++VEGDSAGGSAK GR    QAILPLRGKI+NVE+
Sbjct: 352 SATDIGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEK 411

Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDS 489
           +R DK+L + E+  +ITALGTGI ++ 
Sbjct: 412 SRIDKVLKNAEVQAIITALGTGIHEEF 438


>gi|291196141|emb|CBG14432.1| DNA gyrase subunit B [Pseudomonas brenneri]
 gi|291196195|emb|CBG14487.1| DNA gyrase subunit B [Pseudomonas meridiana]
 gi|291196234|emb|CBG14521.1| DNA gyrase subunit B [Pseudomonas proteolytica]
          Length = 266

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS+D F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKPSADTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|134026046|gb|AAI35319.1| LOC100038293 protein [Xenopus (Silurana) tropicalis]
          Length = 343

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 128/322 (39%), Gaps = 38/322 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 31  YQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDEGLNCRDVTFVPGLYKIFDEILVNAA 90

Query: 54  DESLEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I +T+N +  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 91  DNKQRDPTMSCIKITINPESNTVSVWNNGKGIPVVEHKVEKVFVPALIFGQLLTSSNYDD 150

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++ + + D           + 
Sbjct: 151 DQKKVTGGRNGYGAKLCNIFSNKFTVETACREYKKVFKQTWTDNMSDAADAKIKPFDGED 210

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++  +  V++ L  KR            
Sbjct: 211 YTCITFQPDLSKFKMQILDKDIVALMSRRAYDVAGSSKGVKVFLNGKR---------LPI 261

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    ++K     +P+++     N   ++ +  ++   + +  F N+I    GG
Sbjct: 262 SGFRSYVDLYLKNKLDETGNPLKVMHELVNDRWEICLTMSEKGFQQI-SFVNSIATTKGG 320

Query: 287 THLSGLRSALTRQITSYVEKSF 308
            H+  +   +  ++   V+K  
Sbjct: 321 RHVDYVADQIIAKLIEVVKKKK 342


>gi|146263026|gb|ABQ15283.1| GyrB [Yersinia bercovieri]
 gi|146263042|gb|ABQ15291.1| GyrB [Yersinia mollaretii]
          Length = 206

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 110/209 (52%), Positives = 143/209 (68%), Gaps = 4/209 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AF
Sbjct: 60  RFWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL ++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           R+A+TR + SY++K   SKK K S  GDD
Sbjct: 178 RTAMTRTLNSYMDKEGYSKKAKISATGDD 206


>gi|281332022|emb|CAZ39985.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 232

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 117/234 (50%), Positives = 158/234 (67%), Gaps = 3/234 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPST-KRGTTLRFWP 59

Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S   F    +F+YD L  RLRELSFLN+ V+I L+D+R  + R     Y+GGI +FV +L
Sbjct: 60  SVKAFHDNVEFHYDILARRLRELSFLNTGVKIVLVDER-GDGRRDDFHYEGGIRSFVEHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R AL
Sbjct: 119 AQLKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           TR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS
Sbjct: 179 TRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 232


>gi|291196163|emb|CBG14454.1| DNA gyrase subunit B [Pseudomonas graminis]
          Length = 266

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 126/260 (48%), Positives = 181/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G ++E ++++G+   P+ + G + + TGTE+ F PSS+ F  
Sbjct: 1   VSVVNALSEVLNLTVRRSGKVWEQTYVHGVPQEPMQIVGES-DTTGTEIHFKPSSETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|195934664|gb|ACG58691.1| DNA gyrase subunit B [Photorhabdus temperata subsp. tasmaniensis]
 gi|195934666|gb|ACG58692.1| DNA gyrase subunit B [Photorhabdus temperata subsp. tasmaniensis]
          Length = 287

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 151/290 (52%), Positives = 210/290 (72%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F +  +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV +L+++K P+  +       +D+I +++A
Sbjct: 60  NSGVSIRLLDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           ++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 LQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|291196159|emb|CBG14450.1| DNA gyrase subunit B [Pseudomonas fuscovaginae]
          Length = 266

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 122/260 (46%), Positives = 178/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  S++ F  
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+R+ +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--EVFRYEGGLRAFVEYLNTNKTTVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+  VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKGAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|146263034|gb|ABQ15287.1| GyrB [Yersinia enterocolitica]
          Length = 206

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 108/209 (51%), Positives = 142/209 (67%), Gaps = 4/209 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AF
Sbjct: 60  RFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           R+A+TR + SY++K   SKK K S  GDD
Sbjct: 178 RTAMTRTLNSYMDKEGYSKKAKISAPGDD 206


>gi|291196177|emb|CBG14468.1| DNA gyrase subunit B [Pseudomonas koreensis]
 gi|291196201|emb|CBG14493.1| DNA gyrase subunit B [Pseudomonas moraviensis]
 gi|315133341|emb|CAJ29742.2| DNA gyrase subunit B [Pseudomonas mediterranea]
          Length = 266

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F  
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|146263044|gb|ABQ15292.1| GyrB [Yersinia rohdei]
          Length = 206

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 108/209 (51%), Positives = 142/209 (67%), Gaps = 4/209 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AF
Sbjct: 60  RFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           R+A+TR + SY++K   SKK K S  GDD
Sbjct: 178 RTAMTRTLNSYMDKEGYSKKAKISATGDD 206


>gi|291196185|emb|CBG14476.1| DNA gyrase subunit B [Pseudomonas lutea]
          Length = 266

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 126/260 (48%), Positives = 180/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G ++E ++++G+   P+ + G +   TGTE+ F PSS+ F  
Sbjct: 1   VSVVNALSEVLNLTVRRSGKVWEQTYVHGVPQEPMQIVGESE-TTGTEIHFKPSSETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|117675821|emb|CAL69181.1| DNA gyrase subunit B [Mycetocola saprophilus]
          Length = 312

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/312 (42%), Positives = 191/312 (61%), Gaps = 18/312 (5%)

Query: 195 RLRELSFLNSSVQISLIDKRSPE--------------PREITMFYKGGIEAFVSYLDRHK 240
           R ++++FLN  ++I LID+R  E               +     Y+ G+  +V +L+R K
Sbjct: 1   RFQQMAFLNKGLRIELIDERVDEIEEPVDGEEAAVPTKKHNVFHYERGLVDYVEHLNRAK 60

Query: 241 --KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
             + +    I  +       I++++AM+W   Y E+V  + N I   +GGTH  G R+AL
Sbjct: 61  RSELVNDEIISFEQEDTERKIALEIAMQWTTSYSESVHTYANTINTHEGGTHEEGFRAAL 120

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T  +  Y  +    K    ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V
Sbjct: 121 TTLVNRYAREKNILKDKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFV 180

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +  V D LS W E +P+ AK I+ K L A+  R AAR+AR+  RRKG+L+   +PGKL D
Sbjct: 181 QKVVGDQLSDWFERNPIIAKAIITKALSAATARLAARKARETARRKGLLEGGGMPGKLKD 240

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C  +DP  SE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L + E+  
Sbjct: 241 CQSKDPSVSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALGNAEVQA 300

Query: 477 LITALGTGIGQD 488
           +ITA G GIG+D
Sbjct: 301 MITAFGAGIGED 312


>gi|219963030|gb|ACL68103.1| DNA gyrase subunit B [Xenorhabdus vietnamensis]
          Length = 287

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 153/290 (52%), Positives = 209/290 (72%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+  +PL + G   + TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYHHGVPQSPLNIVGDTEH-TGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    YKGGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--NAEDIFHYKGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|219963028|gb|ACL68102.1| DNA gyrase subunit B [Xenorhabdus japonica]
          Length = 287

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 153/290 (52%), Positives = 209/290 (72%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+  +PL + G   + TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYHHGVPQSPLNIVGDTEH-TGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    YKGGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--NAEDLFHYKGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|93277216|gb|ABF06426.1| gyrase B [Streptomyces sp. M40]
          Length = 327

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 137/320 (42%), Positives = 198/320 (61%), Gaps = 19/320 (5%)

Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------- 215
              ++ GT VTF    DIF   +++++TL  R +E++FLN  ++I L D+R         
Sbjct: 8   EPTDEHGTSVTFWADPDIFETTEYSFETLSRRFQEMAFLNKGLRIRLTDERESAKATSGA 67

Query: 216 --------PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMR 264
                    E + +   Y+GGI  FV Y   R    +  + I ++    +  +S+++AM+
Sbjct: 68  DEAGADEKAEVKSVDYHYEGGIVDFVKYLNSRKGDVVHPTVIDLEAEDKDKLLSLEVAMQ 127

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WN  Y E V  F N I   +GGTH  G R+ALT  I  Y       ++   ++ GDD RE
Sbjct: 128 WNSSYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIRE 187

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G T+++S+K+ +P+F  QTK KL ++EV++ V+  V + L+ WL+ +P EA  I++K + 
Sbjct: 188 GLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLADWLDRNPNEAADIIRKGIQ 247

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444
           A+  R AAR+ARDLTRRKG+L+ ASLPGKL+DC   DP K E+F+VEGDSAGGSAK GR+
Sbjct: 248 AATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRN 307

Query: 445 RENQAILPLRGKILNVERAR 464
            E QAILP+RGKILNVE+AR
Sbjct: 308 PEYQAILPIRGKILNVEKAR 327


>gi|219963056|gb|ACL68116.1| DNA gyrase subunit B [Xenorhabdus bovienii]
 gi|219963058|gb|ACL68117.1| DNA gyrase subunit B [Xenorhabdus bovienii]
          Length = 287

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 149/290 (51%), Positives = 206/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+   PL + G     TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYQHGVPQAPLKMVGDTE-QTGTTVRFWPSMDTFKLNTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+D+R+    E    Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDRRT--NAEDHFHYEGGIKAFVEFLSRNKTPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGG HL G R+A+TR + SY++K   +KK K +  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMDKEGYNKKSKVNATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|291196131|emb|CBG14422.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. aurantiaca]
 gi|291196133|emb|CBG14424.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 266

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 178/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F  
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+ CFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNVQREDGIGVEIALQWNDSFNENLQCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K+LD
Sbjct: 238 SDFLLENPNEAKLVVGKMLD 257


>gi|291196161|emb|CBG14452.1| DNA gyrase subunit B [Pseudomonas gessardii]
          Length = 266

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS+D F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTQIHFKPSADTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|281332024|emb|CAZ39986.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 236

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/238 (50%), Positives = 160/238 (67%), Gaps = 3/238 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F PS 
Sbjct: 1   LHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKXIGPST-KRGTTLRFWPSV 59

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV +L +
Sbjct: 60  KAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVEHLAQ 118

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR
Sbjct: 119 LKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  V
Sbjct: 179 VLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAV 236


>gi|291196171|emb|CBG14462.1| DNA gyrase subunit B [Pseudomonas jessenii]
          Length = 266

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F  
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKASSETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|146263038|gb|ABQ15289.1| GyrB [Yersinia kristensenii]
 gi|146263040|gb|ABQ15290.1| GyrB [Yersinia kristensenii]
          Length = 206

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 110/209 (52%), Positives = 140/209 (66%), Gaps = 4/209 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI AF
Sbjct: 60  RFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL ++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           R+A+TR + SY+ K   SKK K S  GDD
Sbjct: 178 RTAMTRTLNSYMGKEGYSKKAKISATGDD 206


>gi|146189392|emb|CAL91164.1| DNA gyrase subunit beta [Agrobacterium tumefaciens]
          Length = 224

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 135/224 (60%), Positives = 176/224 (78%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G     +GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S   F++ D++Y TL+HRLREL+FLNS V+I L DKR  + ++  + Y GG+EAFV YL
Sbjct: 61  ASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELLYDGGLEAFVRYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+ +P+ I G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+AL
Sbjct: 121 DRSKKPLVNTPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+TSY E S   KK+K S+ G+DCREG T++LS+K+PDP+FS
Sbjct: 181 TRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFS 224


>gi|219963066|gb|ACL68121.1| DNA gyrase subunit B [Xenorhabdus koppenhoeferi]
          Length = 287

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 153/290 (52%), Positives = 208/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+  +PL + G     TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYHHGVPQSPLNIVGDTE-QTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    YKGGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRT--NAEDLFHYKGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|46205733|ref|ZP_00048152.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 260

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 133/237 (56%), Positives = 172/237 (72%), Gaps = 2/237 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VS GLHG G S VNALS+ LKLRI R G  + M F +G    PL V G AG+  GTEVTF
Sbjct: 7   VSAGLHGFGFSFVNALSTSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTF 66

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           LPS + F++ +F+Y TL+ RLREL+FLNS V+I L D R  E R   + Y+GG+EAFV Y
Sbjct: 67  LPSPETFTMTEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHRREELCYEGGVEAFVRY 126

Query: 236 LDRHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           LDR +KP+  M  P+ + G RD I +++A  WND ++E VL FTNNIPQ+DGGTH++G R
Sbjct: 127 LDRSRKPVEGMAKPVTVLGERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFR 186

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           +ALTRQ+T Y E S  +KK+K S+ GDDCREG T+V+S+++PDP+FSSQTK+KL   
Sbjct: 187 AALTRQLTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLSPP 243


>gi|291196256|emb|CBG14542.1| DNA gyrase subunit B [Pseudomonas umsongensis]
 gi|291196258|emb|CBG14544.1| DNA gyrase subunit B [Pseudomonas vancouverensis]
          Length = 266

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F  
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKASSETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|291196254|emb|CBG14540.1| DNA gyrase subunit B [Pseudomonas trivialis]
          Length = 266

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F  
Sbjct: 1   VSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-STGTQIHFKASSETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|146263050|gb|ABQ15295.1| GyrB [Yersinia frederiksenii]
          Length = 206

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 108/209 (51%), Positives = 142/209 (67%), Gaps = 4/209 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AF
Sbjct: 60  RFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           R+A+TR + SY++K   SKK K S  GDD
Sbjct: 178 RTAMTRTLNSYMDKEGYSKKAKISATGDD 206


>gi|219963060|gb|ACL68118.1| DNA gyrase subunit B [Xenorhabdus bovienii]
 gi|219963062|gb|ACL68119.1| DNA gyrase subunit B [Xenorhabdus bovienii]
          Length = 287

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 150/290 (51%), Positives = 206/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+   PL + G     TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYQHGVPQAPLKMVGDTE-QTGTTVRFWPSMDTFKLNTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+D+R+    E    Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDRRT--NAEDHFHYEGGIKAFVEFLSRNKTPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGG HL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|157060428|gb|ABV03220.1| GyrB [Chlamydia trachomatis]
          Length = 262

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 126/272 (46%), Gaps = 15/272 (5%)

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
            +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++  L+
Sbjct: 1   AQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNLILE 60

Query: 597 IDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654
           ++  I            F++              E      S L +      E+ E +  
Sbjct: 61  VESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEAAIA 115

Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714
            +  ++  +++     V E+   +          Y     + I  +              
Sbjct: 116 ANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KISPY 170

Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774
                  ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA +AD
Sbjct: 171 VCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAVEAD 230

Query: 775 DLFSRLMGDEVEPRREFIQENSLPS---ALDI 803
            +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 231 HIFTMLMGEEVPPRREFIKSHALSIRMNNLDI 262


>gi|291196242|emb|CBG14528.1| DNA gyrase subunit B [Pseudomonas rhizosphaerae]
          Length = 266

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 181/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L ++R G ++E  +++G+   P+ + G +   TGT++ F PS++ F  
Sbjct: 1   VSVVNALSEGLQLTVRRAGKLWEQFYVHGVPQEPMKIVGESE-TTGTKIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QIFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK+K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|311358938|gb|ADP94158.1| TopB [Geobacillus stearothermophilus]
          Length = 274

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 110/276 (39%), Positives = 168/276 (60%), Gaps = 7/276 (2%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS WL + I R+G IY   F +G      L   G   N TGT + F P   IFS
Sbjct: 1   ASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDPTIFS 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+Y+TL  RLRE +FL   ++I L+D+R+        +Y+ GIEAFV+YL+  K  L
Sbjct: 60  TTVFDYETLSERLRESAFLLKGLKIELVDERTG--MREVFYYENGIEAFVAYLNEEKDVL 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               +   G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR    Y
Sbjct: 118 HP-VVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEY 176

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVN 361
             +    K+  +++ G D REG ++V+S+++P+   +F  QTK KL +SE RS V++ V+
Sbjct: 177 ARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVS 236

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           + L  +L+E+P  + +++KK + A   R+AAR+AR+
Sbjct: 237 EQLMYFLQENPDVSAMLIKKAIRAYQAREAARKARE 272


>gi|281331926|emb|CAZ39958.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 227

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 113/229 (49%), Positives = 153/229 (66%), Gaps = 3/229 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQIGPST-KRGTTLRFW 59

Query: 177 PSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS   F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV +
Sbjct: 60  PSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVEH 118

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R A
Sbjct: 119 LAQLKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGA 178

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           LTR + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTK
Sbjct: 179 LTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTK 227


>gi|291196244|emb|CBG14530.1| DNA gyrase subunit B [Pseudomonas rhodesiae]
          Length = 266

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F  
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|331029401|gb|AEC49850.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6154]
          Length = 223

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 125/225 (55%), Positives = 162/225 (72%), Gaps = 2/225 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L+LRI R+   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLELRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTETFKNVEYDFATLEHRLRELAFLNSGVHIVLXDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FSS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 223


>gi|219963070|gb|ACL68123.1| DNA gyrase subunit B [Xenorhabdus szentirmaii]
          Length = 287

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 208/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+  +PL + G     TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYHHGVPQSPLNIVGDTE-QTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIQLMDKRT--NAEDVFHYEGGIKAFVEFLSRNKNPIHPNIFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|146263048|gb|ABQ15294.1| GyrB [Yersinia ruckeri]
          Length = 206

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 107/209 (51%), Positives = 142/209 (67%), Gaps = 4/209 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL + G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKMVGET-DQTGTTV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AF
Sbjct: 60  RFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNKNKTPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           R+A+TR + SY++K   SKK K S  GDD
Sbjct: 178 RTAMTRTLNSYMDKEGYSKKAKISATGDD 206


>gi|219963068|gb|ACL68122.1| DNA gyrase subunit B [Xenorhabdus mauleonii]
          Length = 287

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 151/290 (52%), Positives = 208/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++++G+  +PL + G     TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYMHGVPQSPLKIVGDTE-QTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+         Y+GGI+AFV +L R+K PL  +       +D I ++++
Sbjct: 60  NSGVSIRLVDKRTNTE--DLFHYEGGIKAFVEFLSRNKNPLHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+++   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDREGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|146189398|emb|CAL91167.1| DNA gyrase subunit beta [Agrobacterium vitis]
          Length = 224

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 136/224 (60%), Positives = 179/224 (79%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L ++I+R G ++EMSF +G+ D PL VTG     +GTE+TFL
Sbjct: 1   SGGLHGVGVSVVNALSVKLSMKIRRHGKVHEMSFTHGVADAPLAVTGDYQGRSGTEITFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F+  +F+Y TL+HRLREL+FLNS V+I L DKR  + R+  M Y GG+EAFV YL
Sbjct: 61  PSTETFTQVEFDYGTLEHRLRELAFLNSGVRILLTDKRKSDIRQEEMLYDGGLEAFVRYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR KKPL+ +P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R AL
Sbjct: 121 DRSKKPLVSNPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQITSY + S  +KK+K ++ G+DCREG ++VLS+K+PDP+FS
Sbjct: 181 TRQITSYADSSGITKKEKVTLQGEDCREGLSAVLSVKVPDPKFS 224


>gi|291196189|emb|CBG14480.1| DNA gyrase subunit B [Pseudomonas mandelii]
          Length = 266

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 126/260 (48%), Positives = 178/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TGT++ F PS   F  
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTGTQIHFKPSDLTFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|313611863|gb|EFR86323.1| DNA gyrase subunit B [Listeria monocytogenes FSL F2-208]
          Length = 130

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/131 (52%), Positives = 90/131 (68%), Gaps = 7/131 (5%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T LHAGGKF    Y
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119

Query: 115 KVSGGLHGVGV 125
           KVSGGLHGVG 
Sbjct: 120 KVSGGLHGVGA 130


>gi|146263024|gb|ABQ15282.1| GyrB [Yersinia aldovae]
          Length = 206

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 105/209 (50%), Positives = 139/209 (66%), Gaps = 4/209 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+   PL + G     TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGETE-LTGTTV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS   F +  +F Y+ L  RLRELSFLNS V I L D R+ +       Y+GGI AF
Sbjct: 60  RFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDNRNDKE--DHFHYEGGIRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           R+A+TR + SY++K   SKK K S  GDD
Sbjct: 178 RTAMTRTLNSYMDKEGYSKKAKISATGDD 206


>gi|164456663|dbj|BAF97824.1| gyrase B subunit [Vibrio fischeri]
          Length = 256

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 126/258 (48%), Positives = 179/258 (69%), Gaps = 3/258 (1%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  ++L I R G I++  + +G  + PL V G   + TGT++ F PS + F+   F Y+ 
Sbjct: 1   SEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEETFTNVVFVYEI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I L D R  E +     Y+GGI+AFV +L+R+K P+ Q      
Sbjct: 60  LAKRLRELSFLNSGVSIKLQDMR-EEDKADHFMYEGGIQAFVQHLNRNKTPIHQKVFHFD 118

Query: 252 GSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
             R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR + ++++K   S
Sbjct: 119 SEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNTFMDKEGFS 178

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E
Sbjct: 179 KKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLAE 238

Query: 371 HPLEAKIIVKKVLDASMV 388
           +P EAK++  K++DA+  
Sbjct: 239 NPSEAKMVCSKIIDAARA 256


>gi|195934654|gb|ACG58686.1| DNA gyrase subunit B [Photorhabdus temperata subsp. thracensis]
 gi|195934656|gb|ACG58687.1| DNA gyrase subunit B [Photorhabdus temperata subsp. thracensis]
          Length = 287

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 209/290 (72%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  NPL V G     TGT V F PS D F    +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYHLGVPQNPLKVVGETE-QTGTRVRFWPSMDTFRDNTEFQHDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+    E    Y+GGI+AFV +L+++K P+  +       +D+I +++A
Sbjct: 60  NSGVSIRLLDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSIGVEVA 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           ++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 LQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|58415306|emb|CAH04911.1| DNA gyrase subunit B [Frigoribacterium faeni]
 gi|117675839|emb|CAL69190.1| DNA gyrase subunit B [Frigoribacterium faeni]
          Length = 300

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 129/300 (43%), Positives = 186/300 (62%), Gaps = 8/300 (2%)

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFVSY--LDRHKKP 242
           Y+TL+ R ++++FLN  ++I L D+R  E     R     Y+ G+  +V Y    +  + 
Sbjct: 1   YETLRTRFQQMAFLNKGLRIELSDERVQEDDATARHDVFHYEKGLVDYVEYLNTVKKVET 60

Query: 243 LMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +    I  +       IS+++AM+WN  Y E+V  + N I   +GGTH  G R+ALT  +
Sbjct: 61  VHDDIIAFEQEDTEKKISLEVAMQWNTSYQESVHTYANTINTHEGGTHEEGFRAALTTLV 120

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y  +    K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E +S V+   
Sbjct: 121 NRYAREQKLLKEKDDNLTGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKSFVQKIT 180

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D ++ W   +P +A  IV+K + AS  R AAR+AR+ TRRKGVL+   +PGKL DC  +
Sbjct: 181 FDQITDWFGRNPRQATEIVRKGILASQARMAARKAREQTRRKGVLESNGMPGKLKDCQSK 240

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L + E+  +I A
Sbjct: 241 DPSLSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMIKA 300


>gi|164456665|dbj|BAF97825.1| gyrase B subunit [Vibrio fluvialis]
          Length = 246

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 123/248 (49%), Positives = 179/248 (72%), Gaps = 3/248 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  + L I R G ++  ++ +G+ + PL V G   + +GT V F PS++ F+  +F+Y
Sbjct: 1   ALSEKVVLTIHRGGKVHTQTYRHGVPEAPLAVIGDT-DRSGTMVRFWPSAETFTNIEFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  RLRELSFLNS V I L+D+R  E ++    Y+GGI+AFV++L+R+K P+ +    
Sbjct: 60  EILAKRLRELSFLNSGVSIKLVDER-EEDKQDHFMYEGGIQAFVTHLNRNKTPIHEKVFH 118

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K  
Sbjct: 119 FNSEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
            SKK + +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L
Sbjct: 179 FSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFL 238

Query: 369 EEHPLEAK 376
            E+P EAK
Sbjct: 239 AENPSEAK 246


>gi|146263036|gb|ABQ15288.1| GyrB [Yersinia intermedia]
          Length = 206

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 108/209 (51%), Positives = 141/209 (67%), Gaps = 4/209 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+   PL + G   + TGT V
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-DLTGTTV 59

Query: 174 TFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI AF
Sbjct: 60  RFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL ++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLSKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           R+A+TR + SY++K   SKK K S  GDD
Sbjct: 178 RTAMTRTLNSYMDKEGYSKKAKISATGDD 206


>gi|291196183|emb|CBG14475.1| DNA gyrase subunit B [Pseudomonas lundensis]
          Length = 266

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 125/260 (48%), Positives = 180/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F  
Sbjct: 1   VSVVNALSEILVLTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTQIHFKPSAETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVDYLNTNKTPVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|213493555|gb|ACJ47922.1| DNA gyrase subunit B [Pseudomonas sp. BR2-02]
 gi|213493557|gb|ACJ47923.1| DNA gyrase subunit B [Pseudomonas sp. BR2-22]
 gi|213493563|gb|ACJ47926.1| DNA gyrase subunit B [Pseudomonas sp. BR3-39]
 gi|213493565|gb|ACJ47927.1| DNA gyrase subunit B [Pseudomonas sp. BR4-02]
          Length = 236

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 116/238 (48%), Positives = 164/238 (68%), Gaps = 3/238 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS + F
Sbjct: 1   VGVSVVNALSEELILTVRRAGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSDETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNN 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 235


>gi|61844885|emb|CAG44515.1| DNA gyrase subunit B [Mycobacterium canettii]
 gi|61844889|emb|CAG44516.1| DNA gyrase subunit B [Mycobacterium canettii]
 gi|61844891|emb|CAG44517.1| DNA gyrase subunit B [Mycobacterium canettii]
 gi|61844893|emb|CAG44518.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 140070001]
 gi|61844895|emb|CAG44519.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 140070002]
 gi|61844899|emb|CAG44520.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 140070003]
 gi|61844901|emb|CAG44521.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 140070005]
 gi|61844907|emb|CAG44523.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 19980863]
          Length = 319

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 169/321 (52%), Gaps = 32/321 (9%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F   +++
Sbjct: 1   NALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVFETTEYD 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEP 218
           ++T+  RL+E++FLN  + I+L D+R                                + 
Sbjct: 59  FETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKV 118

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
           +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+V  F N
Sbjct: 119 KSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFAN 178

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+K+ +P+
Sbjct: 179 TINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEPQ 238

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AAR+AR+L
Sbjct: 239 FEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKAREL 298

Query: 399 TRRKGVLDIASLPGKLADCSE 419
            RRK   DI  LPGKLADC  
Sbjct: 299 VRRKSATDIGGLPGKLADCRS 319


>gi|223885869|gb|ACN22606.1| DNA gyrase subunit beta [Rhizobium sp. SL-1]
          Length = 225

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 137/224 (61%), Positives = 181/224 (80%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS+WLKLRI+R+G ++E+SF +G+ D PL V G      GTEVTFL S + 
Sbjct: 2   GVGVSVVNALSTWLKLRIRRDGKVHEISFTHGVADAPLKVVGEYEGRPGTEVTFLASPET 61

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F++ +++Y+TL+HRLREL+FLNS V+I L DKR P+ +E  M Y GG+EAFV YLDR KK
Sbjct: 62  FTMTEYDYNTLEHRLRELAFLNSGVRIRLTDKRKPDIKEEEMIYDGGLEAFVRYLDRAKK 121

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
           PL+  P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R ALTRQ+T
Sbjct: 122 PLVDKPVAIKGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGALTRQVT 181

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
           SY + S  +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+
Sbjct: 182 SYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKD 225


>gi|61844905|emb|CAG44522.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 140070007]
          Length = 319

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 170/321 (52%), Gaps = 32/321 (9%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F   +++
Sbjct: 1   NALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVFETTEYD 58

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEP 218
           ++T+  RL+E++FLN  + I+L D+R                                + 
Sbjct: 59  FETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKV 118

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
           +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+V  F N
Sbjct: 119 KSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFAN 178

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I   +GGTH  G RSALT  +  Y +     K+   ++ GDD REG  +V+S+K+ +P+
Sbjct: 179 TINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKEKDPNLTGDDIREGLAAVISVKVSEPQ 238

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R AAR+AR+L
Sbjct: 239 FEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKAREL 298

Query: 399 TRRKGVLDIASLPGKLADCSE 419
            RRK   DI  LPGKLADC  
Sbjct: 299 VRRKSATDIGGLPGKLADCRS 319


>gi|251736965|gb|ACT10342.1| DNA gyrase subunit B [Pseudomonas sp. WR3-08]
          Length = 240

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 119/243 (48%), Positives = 165/243 (67%), Gaps = 3/243 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TGT++ F PS D 
Sbjct: 1   GVGVSVVNALSKELVLTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTGTQIHFKPSEDT 59

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
           F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K 
Sbjct: 60  FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKT 117

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + 
Sbjct: 118 AVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 177

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
           +Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + 
Sbjct: 178 TYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 237

Query: 362 DGL 364
              
Sbjct: 238 KYF 240


>gi|190148822|gb|ACE63386.1| DNA gyrase B subunit [Streptomonospora halophila]
          Length = 321

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 131/314 (41%), Positives = 193/314 (61%), Gaps = 5/314 (1%)

Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214
              PL        +TGT+ TF     IF    ++++TL  R++E++FLN  + I++ D+R
Sbjct: 8   PVAPLSRDEETA-ETGTQTTFWADDSIFETTTYSFETLARRMQEMAFLNKGLSITIRDER 66

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                  P   T  Y+ GI  FV++++  K P   + I  +   + IS +++M+WN  + 
Sbjct: 67  REFTGDTPLVQTYHYENGISDFVAHINTTKDPAHATIIGFEEEGEGISAEISMQWNQSFT 126

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
            +V  F N I   +GGTH  G R+ALT  +  Y  +    ++   ++ GDD REG T+++
Sbjct: 127 SSVHTFANTINTAEGGTHEEGFRTALTSVVNRYAREQKLLREKDDNLTGDDIREGLTAII 186

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ DP+F  QTK KL ++E +S V+   ++ L  W E +P EAK IV K   A+  R 
Sbjct: 187 SVKLADPQFEGQTKTKLGNTEAKSFVQRVTHEHLRDWFERNPGEAKDIVTKASQAARARI 246

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+ARDLTRRK +L+  SLPGKL+DC   +P+KSE+++VEGDSAGGSAK GR    QAI
Sbjct: 247 AARQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPHYQAI 306

Query: 451 LPLRGKILNVERAR 464
           LP+RGKILNVE++R
Sbjct: 307 LPIRGKILNVEKSR 320


>gi|291196219|emb|CBG14511.1| DNA gyrase subunit B [Pseudomonas panipatensis]
          Length = 267

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 126/261 (48%), Positives = 179/261 (68%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG ++E  + +G+   PL   G      GTEV F  S++ FS 
Sbjct: 1   VSVVNALSEELRLTIRREGKVWEQIYRHGVPQFPLRPVGETEGA-GTEVHFKASAETFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLRDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVN 117

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 EVFHFNVQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IETEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            + +L E+P EAK +V K++D
Sbjct: 238 FADFLLENPNEAKAVVGKMID 258


>gi|291196175|emb|CBG14466.1| DNA gyrase subunit B [Pseudomonas knackmussii]
          Length = 267

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 127/261 (48%), Positives = 179/261 (68%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+REG ++E  + +G+   PL   G     +GTEV F  S++ FS 
Sbjct: 1   VSVVNALSEELRLTIRREGKVWEQIYHHGVPQFPLRPVGETE-GSGTEVHFKASAETFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLRDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           Q      Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 QVFHFNTQREEDGVGVEIALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            + +L E+P EAK +V K+LD
Sbjct: 238 FADFLLENPNEAKAVVGKMLD 258


>gi|291196215|emb|CBG14507.1| DNA gyrase subunit B [Pseudomonas palleroniana]
          Length = 266

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 178/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F  
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSETFKN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+
Sbjct: 118 QVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|7340783|emb|CAB83043.1| DNA gyrase subunit B [Mycobacterium caprae]
          Length = 314

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 105/316 (33%), Positives = 166/316 (52%), Gaps = 32/316 (10%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L++ IKR+G  +   +        L   G+    TG+ V F     +F   +
Sbjct: 1   VVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVFETTE 58

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR------------------------------SP 216
           ++++T+  RL+E++FLN  + I+L D+R                                
Sbjct: 59  YDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPH 118

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276
           + +  T  Y GG+  FV +++R K  +  S +   G      +++AM+WN GY E+V  F
Sbjct: 119 KVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTF 178

Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336
            N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+S+K+ +
Sbjct: 179 ANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSE 238

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL ++EV+S V+   N+ L+ W E +P ++K++V K + ++  R AAR+AR
Sbjct: 239 PQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVNKAVSSAQARIAARKAR 298

Query: 397 DLTRRKGVLDIASLPG 412
           +L RRK   DI  LPG
Sbjct: 299 ELVRRKSATDIGGLPG 314


>gi|331029383|gb|AEC49841.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 656]
          Length = 225

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 127/227 (55%), Positives = 163/227 (71%), Gaps = 2/227 (0%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           +VSGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVT
Sbjct: 1   QVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVT 60

Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
           FL S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV 
Sbjct: 61  FLASTETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGGVEEFVK 120

Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
           YLDR+KK L+ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R 
Sbjct: 121 YLDRNKKALVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRG 180

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341
           ALTRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FSS
Sbjct: 181 ALTRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 225


>gi|239947931|ref|ZP_04699684.1| DNA gyrase subunit B [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922207|gb|EER22231.1| DNA gyrase subunit B [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 145

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 62/145 (42%), Positives = 88/145 (60%), Gaps = 1/145 (0%)

Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719
           + I   R +RG++E  +L    + SF        +  I + +   L LI    +  I  P
Sbjct: 1   NKIEFFRFSRGLKESKILLKEQLESFEFVQISKLALTIFDVFGKQLKLIVKSQEFDILTP 60

Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779
             LL+TI   G+KGI++QR+KGLGEMN+ QLWETTL P  R+LL+V++ +  +A+ +FS 
Sbjct: 61  SQLLNTIIECGKKGINIQRFKGLGEMNSDQLWETTLAPAKRTLLQVRVVEVDEAEGIFST 120

Query: 780 LMGDEVEPRREFIQENSLP-SALDI 803
           LMGD VEPRR FIQ N+L    LD+
Sbjct: 121 LMGDVVEPRRLFIQANALNVVNLDV 145


>gi|291196191|emb|CBG14483.1| DNA gyrase subunit B [Pseudomonas marincola]
          Length = 266

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 124/260 (47%), Positives = 179/260 (68%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L + I+R G I+E ++ +G+   P+   G   + +GT++ F PS D F+ 
Sbjct: 1   VSVVNALSKELVMTIRRAGKIWEQTYFHGVPQAPIAAVGDT-DTSGTQIHFKPSEDTFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV YL+++K  + 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNQNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+
Sbjct: 118 QVFHFTVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNAYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK +V K++D
Sbjct: 238 SDFLLENPNEAKAVVGKMID 257


>gi|146321368|ref|YP_001201079.1| DNA gyrase B subunit [Streptococcus suis 98HAH33]
 gi|145692174|gb|ABP92679.1| DNA gyrase B subunit [Streptococcus suis 98HAH33]
          Length = 126

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/110 (50%), Positives = 76/110 (69%), Gaps = 6/110 (5%)

Query: 1   MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55
           M++ I++       YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE
Sbjct: 1   MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59

Query: 56  SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
           +L G+AD I V +  D S TV DNGRGIP D+ ++ G  A E + T LHA
Sbjct: 60  ALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVETVFTVLHA 109


>gi|251736971|gb|ACT10345.1| DNA gyrase subunit B [Pseudomonas sp. BR8-01]
          Length = 240

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 118/243 (48%), Positives = 166/243 (68%), Gaps = 3/243 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS+D F
Sbjct: 1   VGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKPSADTF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +  
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGK 237

Query: 363 GLS 365
             S
Sbjct: 238 YFS 240


>gi|213493613|gb|ACJ47951.1| DNA gyrase subunit B [Pseudomonas sp. WR6-30]
          Length = 236

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/238 (48%), Positives = 165/238 (69%), Gaps = 3/238 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F
Sbjct: 1   VGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKPSAETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 235


>gi|210062250|gb|ACJ06174.1| GyrB [Aeromonas allosaccharophila]
          Length = 283

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 153/286 (53%), Positives = 204/286 (71%), Gaps = 3/286 (1%)

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
           +YE ++  G    PL   G +   TGTEV F PS  IFS   F+Y+ L  RLRELSFLNS
Sbjct: 1   VYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFSDTLFHYEILAKRLRELSFLNS 59

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+
Sbjct: 60  GVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQ 117

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + +Y++K   SKK K +  GDD RE
Sbjct: 118 WNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVRE 177

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++D
Sbjct: 178 GLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIID 237

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           A+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 AARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 283


>gi|219963050|gb|ACL68113.1| DNA gyrase subunit B [Xenorhabdus ehlersii]
          Length = 287

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 152/290 (52%), Positives = 207/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F    +F +D L  RLRELSFL
Sbjct: 1   KVHEQTYCLGVPQSPLKVVGDTE-QTGTTVRFWPSMDTFKINTEFEFDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I LIDKR+         Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVAIRLIDKRTNTE--DLFHYEGGIKAFVEFLSRNKNPIHPNVFYFCTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKTKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++VVE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTVVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC +RDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQQRDPALSELYLVEG 287


>gi|213493581|gb|ACJ47935.1| DNA gyrase subunit B [Pseudomonas sp. BR6-22]
 gi|213493603|gb|ACJ47946.1| DNA gyrase subunit B [Pseudomonas sp. WR4-28]
 gi|213493609|gb|ACJ47949.1| DNA gyrase subunit B [Pseudomonas sp. WR6-06]
 gi|213493623|gb|ACJ47956.1| DNA gyrase subunit B [Pseudomonas sp. WR8-34]
          Length = 236

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 166/238 (69%), Gaps = 3/238 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F
Sbjct: 1   VGVSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFKPSAETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTP 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 235


>gi|213493575|gb|ACJ47932.1| DNA gyrase subunit B [Pseudomonas sp. BR5-31]
 gi|213493587|gb|ACJ47938.1| DNA gyrase subunit B [Pseudomonas sp. BR7-15]
 gi|213493615|gb|ACJ47952.1| DNA gyrase subunit B [Pseudomonas sp. WR7-23]
          Length = 236

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/238 (48%), Positives = 165/238 (69%), Gaps = 3/238 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F
Sbjct: 1   VGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKPSAETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 235


>gi|213493569|gb|ACJ47929.1| DNA gyrase subunit B [Pseudomonas sp. BR4-20]
 gi|213493583|gb|ACJ47936.1| DNA gyrase subunit B [Pseudomonas sp. BR6-42]
 gi|213493591|gb|ACJ47940.1| DNA gyrase subunit B [Pseudomonas sp. WR1-08]
 gi|213493601|gb|ACJ47945.1| DNA gyrase subunit B [Pseudomonas sp. WR4-13]
 gi|213493605|gb|ACJ47947.1| DNA gyrase subunit B [Pseudomonas sp. WR5-16]
 gi|213493621|gb|ACJ47955.1| DNA gyrase subunit B [Pseudomonas sp. WR8-26]
          Length = 236

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/238 (48%), Positives = 165/238 (69%), Gaps = 3/238 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F
Sbjct: 1   VGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSAETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 235


>gi|157060432|gb|ABV03222.1| GyrB [Chlamydia trachomatis]
          Length = 261

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 15/271 (5%)

Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597
           +PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++  L++
Sbjct: 1   QPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNLILEV 60

Query: 598 DKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655
           +  I            F++              E      S L +      E+ E +   
Sbjct: 61  ESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEAAIAA 115

Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715
           +  ++  +++     V E+   +          Y     + I  +               
Sbjct: 116 NEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KISPYV 170

Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
                 ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA +AD 
Sbjct: 171 CYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAVEADH 230

Query: 776 LFSRLMGDEVEPRREFIQENSLPS---ALDI 803
           +F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 231 IFTMLMGEEVPPRREFIKSHALSIRMNNLDI 261


>gi|125487112|gb|ABN42498.1| gyrase B [Xylella fastidiosa]
 gi|125487114|gb|ABN42499.1| gyrase B [Xylella fastidiosa]
 gi|125487116|gb|ABN42500.1| gyrase B [Xylella fastidiosa]
          Length = 274

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 166/271 (61%), Positives = 212/271 (78%)

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            E R     Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + C
Sbjct: 4   GEGRRDDFHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYC 63

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           FTNNIPQKDGGTHL+G R+ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P
Sbjct: 64  FTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVP 123

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
           +P FSSQTKEKLVSS+V+  VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+A
Sbjct: 124 EPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKA 183

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           RDLTRRKGVLDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRG
Sbjct: 184 RDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRG 243

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIG 486
           KILNVERARFD+MLSS E+GTLITALGTGIG
Sbjct: 244 KILNVERARFDRMLSSAEVGTLITALGTGIG 274


>gi|164456669|dbj|BAF97827.1| gyrase B subunit [Vibrio furnissii]
          Length = 254

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/256 (47%), Positives = 184/256 (71%), Gaps = 3/256 (1%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
            + L I R G ++  ++ +G+ + PL V G   + +GT V F PS++ F+  +F+Y+ L 
Sbjct: 1   KVVLTIHRGGKVHTQTYRHGVPEAPLAVVGDT-DRSGTMVRFWPSAETFTNIEFHYEILA 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLRELSFLNS V I L+D+R  + ++    Y+GGI+AFV++L+R+K P+ +        
Sbjct: 60  KRLRELSFLNSGVSIKLVDER-EDNKQDHFMYEGGIQAFVNHLNRNKTPIHEKVFHFNSE 118

Query: 254 RDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
           R++ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R+ALTR + +Y++K   SKK
Sbjct: 119 REDGISVEVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMDKEGYSKK 178

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L+ +L E+P
Sbjct: 179 AKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLNDFLAENP 238

Query: 373 LEAKIIVKKVLDASMV 388
            EAKI+  K++DA+  
Sbjct: 239 SEAKIVCSKIIDAARA 254


>gi|219963034|gb|ACL68105.1| DNA gyrase subunit B [Xenorhabdus beddingii]
          Length = 287

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 149/290 (51%), Positives = 206/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++ +G+  +PL V G   + TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYRHGVPQSPLKVVGDTEH-TGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+D R+    E    Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVSIRLVDNRT--NAEKHFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ +  +L EHP +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKVVEYLLEHPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  S+L+L  G
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSQLYLGGG 287


>gi|281331930|emb|CAZ39960.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 235

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 156/237 (65%), Gaps = 3/237 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L + + + G  Y+  F NG    PL     +    GT V F PS+ 
Sbjct: 1   HGVGVSVVNALSQKLLVDVFQGGFHYQQEFSNGAAVTPLAKL-ESTTKRGTTVRFWPSTV 59

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            F    +++YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L + 
Sbjct: 60  AFHDNVEYHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQL 118

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K PL  +   + G  +NI +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR 
Sbjct: 119 KTPLHPNVXSVTGEHNNIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRV 178

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  V
Sbjct: 179 LNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAV 235


>gi|281331998|emb|CAZ39973.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 250

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 123/252 (48%), Positives = 163/252 (64%), Gaps = 3/252 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSV NALS  L + + + G+ Y+  F NG     L     A    GT V F PS+
Sbjct: 1   LHGVGVSVDNALSQKLLVDVFQNGSHYQQEFSNGAAVTALAKL-EATTKRGTTVRFWPST 59

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L +
Sbjct: 60  VAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQ 118

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR
Sbjct: 119 LKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE+
Sbjct: 179 VLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVEN 238

Query: 359 FVNDGLSAWLEE 370
                L  +L+E
Sbjct: 239 AFGARLEEFLQE 250


>gi|281331664|emb|CAZ40026.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 239

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 155/239 (64%), Gaps = 3/239 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L + + + G  Y+  F NG     L          GT V F PS+ 
Sbjct: 1   HGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRGTTVRFWPSTV 59

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L + 
Sbjct: 60  AFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQL 118

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR 
Sbjct: 119 KTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRV 178

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
           + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE 
Sbjct: 179 LNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVEK 237


>gi|302122561|gb|ADK92948.1| topoisomerase IV subunit B [Geobacillus sp. C12]
          Length = 274

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 110/276 (39%), Positives = 168/276 (60%), Gaps = 7/276 (2%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
            SVVNALS WL + I R+G IY   F +G      L   G   N TGT + F P   IFS
Sbjct: 1   ASVVNALSEWLGVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDPTIFS 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
              F+Y+TL  RLRE +FL   ++I L+D+R+        +Y+ GIEAFV+YL+  K  L
Sbjct: 60  TTVFDYETLSERLRESAFLLKGLKIELVDERTG--MREVFYYENGIEAFVAYLNEEKDVL 117

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
               +   G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR    Y
Sbjct: 118 HP-VVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEY 176

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVN 361
             +    K+  +++ G D REG ++V+S+++P+   +F  QTK KL +SE RS V++ V+
Sbjct: 177 ARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVS 236

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           + L  +L+E+P  + +++KK + A   R+AAR+AR+
Sbjct: 237 EQLMYFLQENPDVSAMLIKKAIRAYQAREAARKARE 272


>gi|219963048|gb|ACL68112.1| DNA gyrase subunit B [Xenorhabdus kozodoii]
          Length = 287

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 154/290 (53%), Positives = 208/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYRLGVPQSPLKVVGDTE-QTGTTVRFWPSMDTFRVNTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I LIDKR+    E    Y+GGI+AFV +L R+K P+  +       +D I+++++
Sbjct: 60  NSGVSIRLIDKRT--SAEDHFHYEGGIKAFVEFLSRNKNPIHPNVFYFCTEKDGINVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGG HL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTKEKLVSSEV++VVE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKEKLVSSEVKTVVETLMNEKLVEYLLENPNDAKTVVSKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG +D+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGAMDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|219963044|gb|ACL68110.1| DNA gyrase subunit B [Xenorhabdus kozodoii]
 gi|219963046|gb|ACL68111.1| DNA gyrase subunit B [Xenorhabdus kozodoii]
          Length = 287

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 154/290 (53%), Positives = 208/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F    +F YD L  RLRELSFL
Sbjct: 1   KVHEQTYRLGVPQSPLKVVGDTE-QTGTTVRFWPSMDTFKVNTEFEYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I LIDKR+    E    Y+GGI+AFV +L R+K P+  +       +D I+++++
Sbjct: 60  NSGVSIRLIDKRT--SAEDHFHYEGGIKAFVEFLSRNKNPIHPNVFYFCTEKDGINVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGG HL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTKEKLVSSEV++VVE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKEKLVSSEVKTVVETLMNEKLVEYLLENPNDAKTVVSKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG +D+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGAMDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|219963052|gb|ACL68114.1| DNA gyrase subunit B [Xenorhabdus griffiniae]
          Length = 287

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 151/290 (52%), Positives = 207/290 (71%), Gaps = 4/290 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFL 202
            ++E ++  G+  +PL V G     TGT V F PS D F    +F ++ L  RLRELSFL
Sbjct: 1   KVHEQTYCLGVPQSPLKVVGDTE-LTGTTVRFWPSMDTFKINTEFEFEILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L+DKR+         Y+GGI+AFV +L R+K P+  +       +D I ++++
Sbjct: 60  NSGVAIRLVDKRTNTE--DLFHYEGGIKAFVEFLSRNKNPIHPNVFYFCTEKDGIGVEIS 117

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++K   +KK K S  GDD 
Sbjct: 118 MQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDA 177

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++VVE+ +N+ L  +L E+P +AK +V K+
Sbjct: 178 REGLIAVISVKVPDPKFSSQTKDKLVSSEVKTVVETLMNEKLVEYLLENPNDAKTVVGKI 237

Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
           +DA+  R+AAR+AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEG
Sbjct: 238 IDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|239914367|dbj|BAH78862.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914369|dbj|BAH78863.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914371|dbj|BAH78864.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914373|dbj|BAH78865.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914375|dbj|BAH78866.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914377|dbj|BAH78867.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914379|dbj|BAH78868.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914381|dbj|BAH78869.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914383|dbj|BAH78870.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914393|dbj|BAH78875.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914417|dbj|BAH78887.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914451|dbj|BAH78904.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914455|dbj|BAH78906.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914457|dbj|BAH78907.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914459|dbj|BAH78908.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914461|dbj|BAH78909.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914463|dbj|BAH78910.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914465|dbj|BAH78911.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914467|dbj|BAH78912.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914469|dbj|BAH78913.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914471|dbj|BAH78914.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914473|dbj|BAH78915.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914475|dbj|BAH78916.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914479|dbj|BAH78918.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914481|dbj|BAH78919.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 297

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 138/299 (46%), Positives = 197/299 (65%), Gaps = 20/299 (6%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------DNPLVVTGSAGND 168
           S VN LS WLKL ++R+G ++ M F  GI                   +PL ++G   + 
Sbjct: 1   SCVNGLSKWLKLTVRRDGKVHHMEFARGIPQNRLLEPAEAPDGKMVEVSPLRMSG-TTDK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+RS +       + GG
Sbjct: 60  RGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRSGKE--EDFAFSGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VLCFTNNIPQ+DGGTH
Sbjct: 118 VKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVLCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLV
Sbjct: 178 LTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           SSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD 
Sbjct: 238 SSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDG 296


>gi|213493573|gb|ACJ47931.1| DNA gyrase subunit B [Pseudomonas sp. BR5-17]
 gi|213493579|gb|ACJ47934.1| DNA gyrase subunit B [Pseudomonas sp. BR6-10]
 gi|213493585|gb|ACJ47937.1| DNA gyrase subunit B [Pseudomonas sp. BR7-01]
 gi|213493597|gb|ACJ47943.1| DNA gyrase subunit B [Pseudomonas sp. WR2-10]
          Length = 236

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/238 (48%), Positives = 164/238 (68%), Gaps = 3/238 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS + F
Sbjct: 1   VGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSEETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 235


>gi|224797377|gb|ACN62718.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797379|gb|ACN62719.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797381|gb|ACN62720.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797385|gb|ACN62722.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797387|gb|ACN62723.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797389|gb|ACN62724.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797391|gb|ACN62725.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797393|gb|ACN62726.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797395|gb|ACN62727.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797399|gb|ACN62729.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797401|gb|ACN62730.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797403|gb|ACN62731.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797405|gb|ACN62732.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797407|gb|ACN62733.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797409|gb|ACN62734.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797411|gb|ACN62735.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797413|gb|ACN62736.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797415|gb|ACN62737.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797417|gb|ACN62738.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797419|gb|ACN62739.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797421|gb|ACN62740.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797423|gb|ACN62741.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797425|gb|ACN62742.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797427|gb|ACN62743.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797429|gb|ACN62744.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797431|gb|ACN62745.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797433|gb|ACN62746.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797435|gb|ACN62747.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797437|gb|ACN62748.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797439|gb|ACN62749.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797441|gb|ACN62750.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
          Length = 340

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 137/344 (39%), Positives = 207/344 (60%), Gaps = 9/344 (2%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALSS   ++I R+  I+ + F NG  +  PL       N+TGT +TFLP S IF
Sbjct: 1   GSSVVNALSSVFDVKIYRDTKIWHIKFGNGGQVKQPLTEI-GTTNETGTTITFLPDSKIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            V DF++ T+  R+RE +FLNS V+I+L D+R+ +  E       G+E F++Y++  KK 
Sbjct: 60  KVIDFSFTTISERIRESAFLNSGVKITLTDERADKTVEYLF--NNGLEEFITYMNEGKKS 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +    + ++G    I +++A++++  ++EN+L F NN+   +GG+H+ G RS LT+ I  
Sbjct: 118 ITPIVM-MKGLEKEIEVEVALQYSTEFNENLLSFANNVKTSEGGSHVVGFRSGLTKVIND 176

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++   D REG T+++S+K+P+   ++  QTK KL + + R+ VE  V
Sbjct: 177 YARKEGLLKEKDKNLDSTDTREGLTAIISVKVPESLIQYEGQTKGKLGTYDARAAVEIIV 236

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
                 WL E+   A  I++K L A  VR+ AR+AR+     +K       L GKL    
Sbjct: 237 TKQFGFWLTENKTSAYAIIEKALLARNVREEARKAREAARNNKKRGNSDRLLTGKLTPAQ 296

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
            R+   +E+FLVEGDSAGGSAK GR R  QAILPLRGK++N E+
Sbjct: 297 NRNKLNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEK 340


>gi|210062248|gb|ACJ06173.1| GyrB [Aeromonas media]
 gi|210062258|gb|ACJ06178.1| GyrB [Aeromonas media]
 gi|210062260|gb|ACJ06179.1| GyrB [Aeromonas media]
          Length = 283

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 152/286 (53%), Positives = 204/286 (71%), Gaps = 3/286 (1%)

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
           +YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS
Sbjct: 1   VYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNS 59

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+
Sbjct: 60  GVSIRLMDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQ 117

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD RE
Sbjct: 118 WNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVRE 177

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++D
Sbjct: 178 GLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIID 237

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           A+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 AARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 283


>gi|281331654|emb|CAZ40021.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 236

 Score =  202 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 120/238 (50%), Positives = 158/238 (66%), Gaps = 3/238 (1%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVVNALS  L + + + G  Y+  F NG    PL     +    GT V F PS+ 
Sbjct: 1   HGVGVSVVNALSQKLLVDVFQGGFHYQQEFSNGAAXTPLAKL-ESTTKRGTTVRFWPSTV 59

Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
            F    +++YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L + 
Sbjct: 60  AFHDNVEYHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQL 118

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K PL  + I + G  +NI +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR 
Sbjct: 119 KTPLHPNVISVTGEHNNIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRV 178

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE
Sbjct: 179 LNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVE 236


>gi|257062541|gb|ACV40283.1| DNA gyrase subunit B [Yersinia kristensenii]
          Length = 205

 Score =  202 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/208 (52%), Positives = 140/208 (67%), Gaps = 4/208 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVR 59

Query: 175 FLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI AFV
Sbjct: 60  FWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL ++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R
Sbjct: 118 EYLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDD 321
           +A+TR + SY++K   SKK K S  GDD
Sbjct: 178 TAMTRTLNSYMDKEGYSKKAKISATGDD 205


>gi|210062254|gb|ACJ06176.1| GyrB [Aeromonas allosaccharophila]
 gi|210062266|gb|ACJ06182.1| GyrB [Aeromonas media]
 gi|210062270|gb|ACJ06184.1| GyrB [Aeromonas media]
          Length = 283

 Score =  202 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 152/286 (53%), Positives = 204/286 (71%), Gaps = 3/286 (1%)

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
           +YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS
Sbjct: 1   VYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNS 59

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+
Sbjct: 60  GVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQ 117

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD RE
Sbjct: 118 WNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVRE 177

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++D
Sbjct: 178 GLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIID 237

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLV 430
           A+  R+AAR+AR+LTRRKG LDIA LPGKLADC E+DP  SEL++V
Sbjct: 238 AARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 283


>gi|257062515|gb|ACV40270.1| DNA gyrase subunit B [Yersinia mollaretii]
          Length = 205

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/208 (52%), Positives = 142/208 (68%), Gaps = 4/208 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVR 59

Query: 175 FLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS + F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI+AFV
Sbjct: 60  FWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL ++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R
Sbjct: 118 EYLSKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDD 321
           +A+TR + SY++K   SKK K S  GDD
Sbjct: 178 TAMTRTLNSYMDKEGYSKKAKISATGDD 205


>gi|281332040|emb|CAZ39994.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 234

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 120/236 (50%), Positives = 155/236 (65%), Gaps = 3/236 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L + + + G  Y   F NG    PL          GT V F PS+
Sbjct: 1   LHGVGVSVVNALSQKLLVDVFQNGFHYXQEFSNGAAVTPLAKL-ETTTKRGTTVRFWPST 59

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L +
Sbjct: 60  VAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQ 118

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL  + I + G  +NI +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR
Sbjct: 119 LKTPLHPNVISVTGEHNNIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 VLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 234


>gi|224797375|gb|ACN62717.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila melanogaster]
          Length = 340

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 136/344 (39%), Positives = 206/344 (59%), Gaps = 9/344 (2%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           G SVVNALSS   ++I R+  I+ + F NG  +  PL       N+TGT +TFLP S IF
Sbjct: 1   GSSVVNALSSVFDVKIYRDTKIWHIKFGNGGQVKQPLTEI-GTTNETGTTITFLPDSKIF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
            V DF++ T+  R+RE +FLNS V+I+L D+R+ +  E       G+E F++Y++  KK 
Sbjct: 60  KVIDFSFTTISERIRESAFLNSGVKITLTDERADKTVEYLF--NNGLEEFITYMNEGKKS 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           +    + ++G    I +++A++++  ++EN+L F NN+   +GG+H+ G R  LT+ I  
Sbjct: 118 ITPIVM-MKGLEKEIEVEVALQYSTEFNENLLSFANNVKTSEGGSHVVGFRGGLTKVIND 176

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360
           Y  K    K+  +++   D REG T+++S+K+P+   ++  QTK KL + + R+ VE  V
Sbjct: 177 YARKEGLLKEKDKNLDSTDTREGLTAIISVKVPESLIQYEGQTKGKLGTYDARAAVEIIV 236

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418
                 WL E+   A  I++K L A  VR+ AR+AR+     +K       L GKL    
Sbjct: 237 TKQFGFWLTENKTSAYAIIEKALLARNVREEARKAREAARNNKKRGNSDRLLTGKLTPAQ 296

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
            R+   +E+FLVEGDSAGGSAK GR R  QAILPLRGK++N E+
Sbjct: 297 NRNKLNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEK 340


>gi|291196240|emb|CBG14526.1| DNA gyrase subunit B [Pseudomonas resinovorans]
          Length = 267

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 127/261 (48%), Positives = 181/261 (69%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R G ++E  + +G+   PL   G   + TGTEV F  SS+ FS 
Sbjct: 1   VSVVNALSEELRLTIRRAGQVWEQIYRHGVPQFPLRPVGET-DGTGTEVHFKASSETFSN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGIVLRDERSGKE--ELFKYEGGLKAFVEYLNTNKTIVN 117

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +     +Q   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 EVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKF 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            + +L E+P EAK +V K++D
Sbjct: 238 FADFLLENPNEAKAVVGKMID 258


>gi|213493553|gb|ACJ47921.1| DNA gyrase subunit B [Pseudomonas sp. BR1-41]
 gi|213493611|gb|ACJ47950.1| DNA gyrase subunit B [Pseudomonas sp. WR6-15]
 gi|213493619|gb|ACJ47954.1| DNA gyrase subunit B [Pseudomonas sp. WR8-14]
 gi|213493625|gb|ACJ47957.1| DNA gyrase subunit B [Pseudomonas sp. WR8-43]
          Length = 236

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 165/238 (69%), Gaps = 3/238 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS+D F
Sbjct: 1   VGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSADTF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 235


>gi|281332014|emb|CAZ39981.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris]
          Length = 233

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 159/235 (67%), Gaps = 2/235 (0%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I R+G  Y+  +  G    PL     A    GT + F P+ 
Sbjct: 1   LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRFKPAV 59

Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239
           +IFS  +F+YD L  RLR +SFLNS V+I+LID+R  E R     Y+GGI +FV +L + 
Sbjct: 60  EIFSDVEFHYDILARRLRXISFLNSGVKIALIDER-GEGRRDDFHYEGGIRSFVEHLAQL 118

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
           K PL  + I + G  + I  D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR 
Sbjct: 119 KTPLHPNVISVTGEHNGIVXDVALQWTDAYQETMXCFTNNIPQKDGGTHLAGFRGALTRV 178

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           +++Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR 
Sbjct: 179 LSNYIEQNGIAKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRP 233


>gi|89143212|emb|CAJ57503.1| DNA gyrase subunit B [Microbacterium schleiferi]
          Length = 314

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 129/314 (41%), Positives = 189/314 (60%), Gaps = 18/314 (5%)

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSP--------------EPREITMFYKGGIEAFVS 234
           YDTL+ R ++++FLN  ++I+L D+R                        Y+ G+  +V 
Sbjct: 1   YDTLRTRFQQMAFLNKGLRITLRDERPESAYVVDDQSSGTAATQPHDDFLYERGLVDYVE 60

Query: 235 Y--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
           Y    R  + +    I ++      +IS++LAM+W   Y ENV  F N I   +GGTH  
Sbjct: 61  YLNKVRKTEVVNDEIIEVESEDTERHISLELAMQWTTSYTENVFTFANTINTHEGGTHEE 120

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350
           G R+ALT  +  Y       K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL ++
Sbjct: 121 GFRAALTTLVNRYARAQGMLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNT 180

Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410
           E ++ V+  V D L+ WL+ +P +AK +++K +DA+  R AAR+AR+  RRK V + A++
Sbjct: 181 EAKAFVQKVVGDQLTDWLDRNPAQAKNVIRKAIDAATARLAARKARETARRKSVFESAAM 240

Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470
           P KL DC  +DP  SE+FLVEGDSAGGSA  GR    QAIL LRGKILNVERAR D+ L 
Sbjct: 241 PDKLKDCVSKDPSISEIFLVEGDSAGGSAVGGRDPHTQAILALRGKILNVERARLDRALG 300

Query: 471 SQEIGTLITALGTG 484
           ++E+  +I+A GTG
Sbjct: 301 NKEVQAMISAFGTG 314


>gi|213493559|gb|ACJ47924.1| DNA gyrase subunit B [Pseudomonas sp. BR2-29]
 gi|213493561|gb|ACJ47925.1| DNA gyrase subunit B [Pseudomonas sp. BR3-13]
 gi|213493571|gb|ACJ47930.1| DNA gyrase subunit B [Pseudomonas sp. BR5-10]
 gi|213493607|gb|ACJ47948.1| DNA gyrase subunit B [Pseudomonas sp. WR5-34]
          Length = 236

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 116/238 (48%), Positives = 165/238 (69%), Gaps = 3/238 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F PS++ F
Sbjct: 1   VGVSVVNALSKELVLTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFKPSAETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 235


>gi|11559433|dbj|BAB18783.1| type II DNA topoisomerase [Porphyra onoi]
          Length = 382

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/405 (22%), Positives = 155/405 (38%), Gaps = 34/405 (8%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           G GIP  +H +EG+   E+I   L     ++    KV GG +G G  + N  S+   +  
Sbjct: 1   GAGIPVAMHAKEGVYVPELIFGHLLTSSNYDDGEKKVVGGRNGYGAKLANIFSTRFVVET 60

Query: 140 KRE--GNIYEMSFINGILD--NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TL 192
                G  Y+ +F   ++D   P +   +   DT T +TF P    F +   N D    L
Sbjct: 61  ADASSGKTYKQTFKRNMMDRGTPAIRASAKPRDTWTRITFEPDLAKFGMDSLNEDAVAVL 120

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           Q R+ +++ +   + + L   +                  +   D    P +      + 
Sbjct: 121 QMRVVDMAGVVPGIAVYLNGTKLKINSFKQYV-------DLHLADAPDAPRIHDATSGR- 172

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
                  ++ +  +DG       F N+I    GGTH++ +   L  +I  ++ K      
Sbjct: 173 ------WEVVVSLSDGQLTQT-SFVNSIATTKGGTHVNHVADQLVSRIQEHIAKK----H 221

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               V     +   +  +   + +P F SQTKE L S       +    D ++  L +  
Sbjct: 222 KTLKVKPFQIKSQLSIYVKCLVENPAFDSQTKEMLTSRPASFGSKWVCPDRMAKDLIKSG 281

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +V+ VL  +  R     A+    ++  +              RD  K  L L EG
Sbjct: 282 -----VVESVLSLAESRQVKELAKTDGGKRARVSGIPKLDDANLAGTRDSAKCTLILTEG 336

Query: 433 DSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEI 474
           DSA   A  G S   R+   + PLRGK+LNV  A   +++ + EI
Sbjct: 337 DSAKALAISGLSVVGRDYYGVFPLRGKLLNVREATHKQIMDNAEI 381


>gi|239914439|dbj|BAH78898.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914447|dbj|BAH78902.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914449|dbj|BAH78903.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 297

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 138/299 (46%), Positives = 197/299 (65%), Gaps = 20/299 (6%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------DNPLVVTGSAGND 168
           S VN LS WLKL ++R+G ++ M F  GI                   +PL V+G   + 
Sbjct: 1   SCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEQAEAPDGKMVEVSPLRVSG-TTDK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+R+ +       + GG
Sbjct: 60  RGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRTGKE--EDFAFSGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VLCFTNNIPQ+DGGTH
Sbjct: 118 VKGFVEYINKNKSVLHPTIFHATGEKDGVGVEVSMQWNDGFNEQVLCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLV
Sbjct: 178 LTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           SSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD 
Sbjct: 238 SSEVRLPVEEMVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDG 296


>gi|149191296|ref|ZP_01869551.1| DNA topoisomerase IV subunit B [Vibrio shilonii AK1]
 gi|148834894|gb|EDL51876.1| DNA topoisomerase IV subunit B [Vibrio shilonii AK1]
          Length = 401

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 125/349 (35%), Positives = 181/349 (51%), Gaps = 9/349 (2%)

Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299
            +         +      ++   +   +G       + N IP   GGTH++GLR  L   
Sbjct: 9   PEQPFTGEFSAETEAATWAV---IWQPEGAEMITESYVNLIPTAQGGTHVNGLRQGLLDA 65

Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359
           +  + E      +    + GDD  E  + VLSIKM DP+F+ QTKE+L S +  + V   
Sbjct: 66  MREFCEFRNLLPRG-VKLTGDDVFERCSYVLSIKMQDPQFAGQTKERLSSRQCAAFVSGV 124

Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419
           V D  S WL E P  A+ + +  +  +       RA     RK V    +LPGKL DCS+
Sbjct: 125 VKDAFSLWLNEKPQLAEQLAEVCIANAH---RRMRASKKVVRKKVASGPALPGKLTDCSQ 181

Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479
           +D  ++E+F VEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +  
Sbjct: 182 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI-- 239

Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539
           ++  GI  D+ +++ LRY K+ I+ DAD DG HI TLL   F +   SL+  G +Y+  P
Sbjct: 240 SVALGIDPDTENLDGLRYGKVCILADADSDGLHIATLLCALFTKHFRSLVAAGHVYVAMP 299

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
           PLY I  GK + Y  D++  +  L   S  +        KG+   N L+
Sbjct: 300 PLYRIDCGKEVFYALDDDEKDGILERLSKKKAKINVQRFKGLGEMNPLQ 348



 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 726 IFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783
           +  + +K   I++QR+KGLGEMN  QL ETT++P+TR L+++ I D    D++   L+G 
Sbjct: 323 LERLSKKKAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDDEATDEMMDMLLGK 382

Query: 784 E-VEPRREFIQEN 795
           +  + RR ++Q N
Sbjct: 383 KRADDRRSWLQNN 395


>gi|183987570|gb|ACC65775.1| topoisomerase II [Pleurotus citrinopileatus]
          Length = 709

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 109/573 (19%), Positives = 206/573 (35%), Gaps = 44/573 (7%)

Query: 120 LHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFL 176
            +G G  + N  S    +    K     Y  ++   +       +T ++ N+  T VTF 
Sbjct: 1   RNGYGAKLANIYSLEFTIETADKVNEKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F +   + DT   L+ R+ +++     V++ L D+R                A  
Sbjct: 61  PELTRFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKIKTFKQYVEMYIEAATA 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
              +         P  I     +   ++A   +DG  + V  F N+I    GGTH++ + 
Sbjct: 121 GAKENSGGAAQAKPTVIYAQ-ISPRWEVAFATSDGTFQQV-SFANSISTIKGGTHVNYIA 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE-- 351
             L++ I +++ K   +   K +      +      ++  + +P F SQTKE L      
Sbjct: 179 DQLSKSIIAHIAKKNKAATVKPAQ----VKNHMWIFVNALIENPTFGSQTKETLTLPAGK 234

Query: 352 --VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
              R  +       +             I+ +VL+ +  +   +  +    ++  L   +
Sbjct: 235 FGSRPALSEEFMKKVQKSF---------IIDQVLNWAKFKADRQIKKTDGSKRNRLTGMA 285

Query: 410 LPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERAR 464
                 +   ++ +K  L   EGDSA      G A  GR   N  + PLRGK+LNV  AR
Sbjct: 286 KLSDANNAGTKNAEKCTLIHTEGDSAKSLAVAGLAVVGRD--NFGVFPLRGKLLNVREAR 343

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D+++ ++EI  +   +G    ++  +++ LRY +++IMTD D DG+HI+ LL+ F    
Sbjct: 344 HDQIMKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHF 403

Query: 525 MPSLIHNGFLYI-IKPPLYGI--------TRGKSLQYVKDEESLEDYLINQSLSEEIELF 575
            PSL+      +    P+  +            +   V      +++         +E  
Sbjct: 404 YPSLLKVPEFLVEFVTPIVRVSGLLVSSLMSLYTFVTVTKGNQRKNFFTIPEYETWLEET 463

Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN---V 632
            DSK   +K              +       +       +     + +    ++      
Sbjct: 464 PDSKKWTAKYYKGLGTSSDADAREYFSQMGKHMIPFATMEDEERALIDLAFSKKKADDRK 523

Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
               +            E  +   IN   IL  
Sbjct: 524 EWLRQFKPGTYLDHNIDEIPFTDFINKELILFS 556


>gi|291196167|emb|CBG14458.1| DNA gyrase subunit B [Pseudomonas guineae]
          Length = 266

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 127/260 (48%), Positives = 180/260 (69%), Gaps = 3/260 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L + I+R G I+E ++++G+   P+   G +   TGT++ F PS D F+ 
Sbjct: 1   VSVVNALSRELVMTIRRAGKIWEQTYVHGVPQAPIAPVGDSE-TTGTQIHFKPSEDTFAN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             FN+D L  RLRELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + 
Sbjct: 60  IHFNWDILAKRLRELSFLNSGVGIFLKDERSGKE--ELFKYEGGLRAFVEYLNLNKTAVN 117

Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+
Sbjct: 118 QVFHFNMQREDGIGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNAYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    
Sbjct: 178 EQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF 237

Query: 365 SAWLEEHPLEAKIIVKKVLD 384
           S +L E+P EAK++V K++D
Sbjct: 238 SDFLLENPNEAKLVVGKMID 257


>gi|10121865|gb|AAG13405.1|AF285159_1 topoisomerase II alpha-4 [Homo sapiens]
          Length = 581

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 131/343 (38%), Gaps = 45/343 (13%)

Query: 1   MSDNIQNSSYDADS-------IQILKGLDAVKKRPSMYIGDTDGES-------------- 39
           M  N    + DA          Q    L+ +  RP  YIG  +  +              
Sbjct: 13  MQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINY 72

Query: 40  -------GLHHMIYEVLDNAIDESLEGY-ADIITVTLNMDGS-CTVSDNGRGIPTDLHKE 90
                  GL+ +  E+L NA D          I VT++ + +  ++ +NG+GIP   HK 
Sbjct: 73  REVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKV 132

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEM 148
           E +    +I  +L     ++    KV+GG +G G  + N  S+   +    RE   +++ 
Sbjct: 133 EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ 192

Query: 149 SFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205
           ++++ +     +       +  T +TF P    F +Q  + D    +  R  +++     
Sbjct: 193 TWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKD 252

Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
           V++ L   +             G  ++V    + K     + +++   + N   ++ +  
Sbjct: 253 VKVFLNGNK---------LPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTM 303

Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
           ++   + +  F N+I    GG H+  +   +  ++   V+K  
Sbjct: 304 SEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN 345



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 11/151 (7%)

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            +      ++  + +P F SQTKE +            +++             + I+  
Sbjct: 437 VKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAI-GCGIVESILNW 495

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA-----G 436
           V   +         +    +   +          D   R+  +  L L EGDSA      
Sbjct: 496 VKFKAQ---VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVS 552

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDK 467
           G    GR +    + PLRGKILNV  A   +
Sbjct: 553 GLGVVGRDK--YGVFPLRGKILNVREASHKQ 581


>gi|213493551|gb|ACJ47920.1| DNA gyrase subunit B [Pseudomonas sp. BR1-16]
 gi|213493567|gb|ACJ47928.1| DNA gyrase subunit B [Pseudomonas sp. BR4-08]
 gi|213493577|gb|ACJ47933.1| DNA gyrase subunit B [Pseudomonas sp. BR5-38]
 gi|213493593|gb|ACJ47941.1| DNA gyrase subunit B [Pseudomonas sp. WR1-09]
 gi|213493595|gb|ACJ47942.1| DNA gyrase subunit B [Pseudomonas sp. WR2-07]
 gi|213493599|gb|ACJ47944.1| DNA gyrase subunit B [Pseudomonas sp. WR2-25]
 gi|213493617|gb|ACJ47953.1| DNA gyrase subunit B [Pseudomonas sp. WR7-41]
          Length = 236

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 116/238 (48%), Positives = 165/238 (69%), Gaps = 3/238 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F
Sbjct: 1   VGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNN 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y+E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 YIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 235


>gi|298230621|ref|ZP_06964302.1| DNA gyrase subunit B [Streptococcus pneumoniae str. Canada MDR_19F]
          Length = 115

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 4/108 (3%)

Query: 1   MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57
           M++ I+N     YDA  IQ+L+GL+AV+ RP MYIG T  E GLHH+++E++DN+IDE+L
Sbjct: 1   MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59

Query: 58  EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105
            G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHA
Sbjct: 60  AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHA 107


>gi|239914413|dbj|BAH78885.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914415|dbj|BAH78886.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914419|dbj|BAH78888.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914421|dbj|BAH78889.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914423|dbj|BAH78890.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914425|dbj|BAH78891.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914427|dbj|BAH78892.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914429|dbj|BAH78893.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914431|dbj|BAH78894.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914433|dbj|BAH78895.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914435|dbj|BAH78896.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914443|dbj|BAH78900.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914453|dbj|BAH78905.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914489|dbj|BAH78923.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 297

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 139/299 (46%), Positives = 197/299 (65%), Gaps = 20/299 (6%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------DNPLVVTGSAGND 168
           S VN LS WLKL ++R+G ++ M F  GI                   +PL V+G   + 
Sbjct: 1   SCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEPAEAPDGKTVEVSPLRVSG-TTDK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+RS +       + GG
Sbjct: 60  RGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRSGKE--EDFAFSGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VLCFTNNIPQ+DGGTH
Sbjct: 118 VKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVLCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLV
Sbjct: 178 LTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           SSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD 
Sbjct: 238 SSEVRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDG 296


>gi|224174540|emb|CAR92688.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 15245]
 gi|224174542|emb|CAR92689.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 15253]
          Length = 222

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 160/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTETFKNIEYDFATLEHRLRELAFLNSGVHIVLSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPTPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|308234814|ref|ZP_07665551.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
           vaginalis ATCC 14018]
          Length = 599

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 196/369 (53%), Gaps = 33/369 (8%)

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS-------------- 258
           +    PR +   + GG+  FV +L + +        RI G    +               
Sbjct: 134 QNKHHPRVVEFLHNGGVRDFVDFLSKGQAV--SDIWRISGEDTYVEETQAVDSAGDLHAQ 191

Query: 259 -------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF--- 308
                  +D+AMRW +GY   ++ F N +    GG H+ G    LT+QI   VE +    
Sbjct: 192 QVTRKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKL 251

Query: 309 --GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               K     +  DD   G  +V+++++ +P+F  QTK+ L +++V+ +V    +     
Sbjct: 252 KVNLKDSNTKIERDDILAGMVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGE 311

Query: 367 WLEEHPLEAK----IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            +       K     +++K++     R  AR+ +++TRRK  L+ AS+P KL+DC   + 
Sbjct: 312 MISGSKRGFKEQSARVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGND 371

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
             +ELF+VEGDSA G+AK  R+   QA+LP+RGKILNV++A   +MLS++E   +I  +G
Sbjct: 372 DVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVG 431

Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542
            G G   FDI++ RY+KI++MTDADVDGAHIR LLLT F+R M  LI NG +Y   PPL+
Sbjct: 432 AGSGAS-FDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIENGHVYAAVPPLH 490

Query: 543 GITRGKSLQ 551
            I      +
Sbjct: 491 RIALAGKHK 499



 Score =  133 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 4/93 (4%)

Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLL 763
              G+ I       L   +  +  KGI     +QRYKGLGEM+A QL +TT++P TR L 
Sbjct: 497 KHKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRMLR 556

Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENS 796
           R+++ DA QA ++F  LMGD+V PR++FI +N+
Sbjct: 557 RIRMEDAQQASEVFDLLMGDDVPPRKQFIVDNA 589


>gi|57903690|gb|AAW58145.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 275

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 164/264 (62%), Positives = 210/264 (79%)

Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282
             Y+GGI +FV +L + K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQ
Sbjct: 12  FHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQ 71

Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342
           KDGGTHL+G R+ALTR + +Y+E++  +++ K +  GDD REG  +VLS+K+P+P FSSQ
Sbjct: 72  KDGGTHLAGFRAALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQ 131

Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           TKEKLVSS+V+  VE+     L  +L+E+P EA+ I  K++DA+  R+AAR+ARDLTRRK
Sbjct: 132 TKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRK 191

Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462
           GVLDIA LPGKLADC E+DP  SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVER
Sbjct: 192 GVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVER 251

Query: 463 ARFDKMLSSQEIGTLITALGTGIG 486
           ARFD+MLSS E+GTLITALGTGIG
Sbjct: 252 ARFDRMLSSAEVGTLITALGTGIG 275


>gi|213493589|gb|ACJ47939.1| DNA gyrase subunit B [Pseudomonas sp. BR8-42]
          Length = 236

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 117/238 (49%), Positives = 165/238 (69%), Gaps = 3/238 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G +   TGT++ F PS++ F
Sbjct: 1   VGVSVVNALSKELVLTVRRSGKIWEQTYIHGVPQEPMKIVGESE-TTGTQIHFKPSAETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 235


>gi|281331992|emb|CAZ39970.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 244

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 156/240 (65%), Gaps = 3/240 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSV NALS  L + + + G  Y+  F NG     L          GT V F PS+
Sbjct: 1   LHGVGVSVXNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRGTTVRFWPST 59

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L +
Sbjct: 60  VAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQ 118

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR
Sbjct: 119 LKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
            + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE+
Sbjct: 179 VLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVEN 238


>gi|224174526|emb|CAR92681.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 15176]
 gi|224174528|emb|CAR92682.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 15181]
          Length = 222

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 160/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+G  + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLALRIWRDGKEHYIEFAHGDAVAPLRVVGEAPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y + +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYADAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|281332006|emb|CAZ39977.1| DNA gyrase subunit B [Stenotrophomonas acidaminiphila]
          Length = 235

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 159/237 (67%), Gaps = 3/237 (1%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L L +   G   +  F NG    PL   G+     GT V F P
Sbjct: 1   GGLHGVGVSVVNALSEKLLLDVYXGGFHXQQEFSNGAAXAPLKQLGTTS-KRGTTVRFWP 59

Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S+  F    +F+Y+ L  RLRELSFLNS V++ L D+R  E R     Y+GGI++FV +L
Sbjct: 60  STVAFHGNVEFHYEILARRLRELSFLNSGVKVILADER-GEGRRDDFHYEGGIKSFVEHL 118

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            + K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R AL
Sbjct: 119 AQLKTPLHPNVIAVSGEHNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGAL 178

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           TR + +Y+E++  +K+ K S+ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR
Sbjct: 179 TRVLNNYIEQNGIAKQAKISLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVR 235


>gi|157060430|gb|ABV03221.1| GyrB [Chlamydia trachomatis]
          Length = 260

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 15/270 (5%)

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598
           PPLY +++ K  +Y+  E+ ++ YL+N    E   +F D+   +    L  F++  L+++
Sbjct: 1   PPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNLILEVE 60

Query: 599 KLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656
             I            F++              E      S L +      E+ E +   +
Sbjct: 61  SFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEAAIAAN 115

Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716
             ++  +++     V E+   +          Y     + I  +                
Sbjct: 116 EESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KISPYVC 170

Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776
                ++D +  +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA +AD +
Sbjct: 171 YTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAVEADHI 230

Query: 777 FSRLMGDEVEPRREFIQENSLPS---ALDI 803
           F+ LMG+EV PRREFI+ ++L      LDI
Sbjct: 231 FTMLMGEEVPPRREFIKSHALSIRMNNLDI 260


>gi|257062545|gb|ACV40285.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 205

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 107/208 (51%), Positives = 140/208 (67%), Gaps = 4/208 (1%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++  G+   PL + G   + TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-DLTGTTVR 59

Query: 175 FLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI AFV
Sbjct: 60  FWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL ++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R
Sbjct: 118 EYLSKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDD 321
           +A+TR + SY++K   SKK K S  GDD
Sbjct: 178 TAMTRTLNSYMDKEGYSKKAKISATGDD 205


>gi|303304804|emb|CBL59276.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304806|emb|CBL59277.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304808|emb|CBL59278.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304810|emb|CBL59279.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304812|emb|CBL59280.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304814|emb|CBL59281.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304816|emb|CBL59282.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304818|emb|CBL59283.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304820|emb|CBL59284.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304822|emb|CBL59285.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304824|emb|CBL59286.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
 gi|303304826|emb|CBL59287.1| gyrase subunit B [Xanthomonas arboricola pv. pruni]
          Length = 260

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 7/260 (2%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL 
Sbjct: 1   DADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLA 60

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
           + ++     +    +  I+   L   +      ++ I      +D   +   +     + 
Sbjct: 61  SNAVEGAALIRATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLDV 120

Query: 625 ESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFVL 677
           +  Q              + NR      + +  +  + +  ++ ++  R   G +   VL
Sbjct: 121 DKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQVL 180

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737
              +  S   +  R  S  + +       ++       IT        +    ++G  +Q
Sbjct: 181 PMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQVQ 240

Query: 738 RYKGLGEMNASQLWETTLNP 757
           R+KGLGEMNA QLWETT+NP
Sbjct: 241 RFKGLGEMNAEQLWETTVNP 260


>gi|239914437|dbj|BAH78897.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914441|dbj|BAH78899.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914445|dbj|BAH78901.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 297

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 139/299 (46%), Positives = 197/299 (65%), Gaps = 20/299 (6%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------DNPLVVTGSAGND 168
           S VN LS WLKL ++R+G ++ M F  GI                   +PL V+G   + 
Sbjct: 1   SCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEPAEAPDGKTVEVSPLRVSG-TTDK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+RS +       + GG
Sbjct: 60  RGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRSGKE--EDFAFSGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VLCFTNNIPQ+DGGTH
Sbjct: 118 VKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVLCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLV
Sbjct: 178 LTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           SSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD 
Sbjct: 238 SSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDG 296


>gi|224174494|emb|CAR92665.1| DNA gyrase, B subunit [Bradyrhizobium canariense]
 gi|224174496|emb|CAR92666.1| DNA gyrase, B subunit [Bradyrhizobium canariense]
 gi|224174544|emb|CAR92690.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCLA07]
 gi|224174546|emb|CAR92691.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCLA12]
 gi|224174548|emb|CAR92692.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCLA22]
 gi|224174550|emb|CAR92693.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCLA23]
 gi|224174552|emb|CAR92694.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCAH03]
 gi|224174554|emb|CAR92695.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCAH06]
 gi|224174556|emb|CAR92696.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCAH12]
 gi|224174558|emb|CAR92697.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCAH13]
 gi|224174568|emb|CAR92702.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCOC04]
 gi|224174570|emb|CAR92703.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCOC05]
 gi|224174572|emb|CAR92704.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCOC23]
 gi|224174574|emb|CAR92705.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCOC24]
          Length = 222

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 160/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGRRGTEVTFQ 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I+L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTETFKNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRAESNGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|251736969|gb|ACT10344.1| DNA gyrase subunit B [Pseudomonas sp. BR4-38]
          Length = 240

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 117/243 (48%), Positives = 165/243 (67%), Gaps = 3/243 (1%)

Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182
           VGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++ F  SS+ F
Sbjct: 1   VGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSETF 59

Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242
               F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  
Sbjct: 60  KNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTA 117

Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302
           + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +
Sbjct: 118 VNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNT 177

Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362
           Y+E    +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +  
Sbjct: 178 YIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGK 237

Query: 363 GLS 365
             S
Sbjct: 238 YFS 240


>gi|224174520|emb|CAR92678.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 11955]
          Length = 222

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 125/224 (55%), Positives = 160/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTETFKNVEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK L+ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKALVPTPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|281332068|emb|CAZ40008.1| DNA gyrase subunit B [Stenotrophomonas rhizophila]
          Length = 236

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 120/238 (50%), Positives = 159/238 (66%), Gaps = 3/238 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I + G  Y+  + +G   +PL    +A    GT + F PS 
Sbjct: 1   LHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQV-AASTKRGTTLRFWPSL 59

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L +
Sbjct: 60  KAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQ 118

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL  + I + G  + I++D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR
Sbjct: 119 LKTPLHPNVISVTGESNGITVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  V
Sbjct: 179 VLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAV 236


>gi|239914357|dbj|BAH78857.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914359|dbj|BAH78858.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914361|dbj|BAH78859.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914363|dbj|BAH78860.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914365|dbj|BAH78861.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914385|dbj|BAH78871.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914387|dbj|BAH78872.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914389|dbj|BAH78873.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914391|dbj|BAH78874.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914395|dbj|BAH78876.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914397|dbj|BAH78877.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914399|dbj|BAH78878.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914401|dbj|BAH78879.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914403|dbj|BAH78880.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914405|dbj|BAH78881.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914407|dbj|BAH78882.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914409|dbj|BAH78883.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914411|dbj|BAH78884.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914477|dbj|BAH78917.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914483|dbj|BAH78920.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914485|dbj|BAH78921.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914487|dbj|BAH78922.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 297

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 138/299 (46%), Positives = 197/299 (65%), Gaps = 20/299 (6%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------DNPLVVTGSAGND 168
           S VN LS WLKL ++R+G ++ M F  GI                   +PL ++G   + 
Sbjct: 1   SCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGKMVEVSPLRMSG-TTDK 59

Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            GTEV FL   +IF+  +++Y+ L  R+RELSFLN+ V I L D+RS +       + GG
Sbjct: 60  RGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRSGKE--EDFAFSGG 117

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           ++ FV Y++++K  L  +     G +D + ++++M+WNDG++E VLCFTNNIPQ+DGGTH
Sbjct: 118 VKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVLCFTNNIPQRDGGTH 177

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348
           L+GLR+A+TR I  Y+  +  +KK K    GDD REG T VLS+K+P+P+FSSQTK+KLV
Sbjct: 178 LTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLV 237

Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
           SSEVR  VE  V   L+ +L E P +AKII  K+++A+  R+AAR+AR++TRRKGVLD 
Sbjct: 238 SSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDG 296


>gi|183987590|gb|ACC65785.1| topoisomerase II [Pleurotus djamor]
          Length = 735

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 109/590 (18%), Positives = 211/590 (35%), Gaps = 52/590 (8%)

Query: 120 LHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFL 176
            +G G  + N  S    +    K     Y  ++   +       +T +   +  T+VTF 
Sbjct: 1   RNGFGAKLANIYSHEFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEEWTKVTFK 60

Query: 177 PSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           P    F +   + DT   L+ R+ +++     V++ L D+R                A  
Sbjct: 61  PDLARFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKVKNFKQYVEMYLDSAAA 120

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
              +            I   + +   ++    +DG  + V  F N+I    GGTH++ + 
Sbjct: 121 DAKENSGGAAQAKA-SIIYEQISPRWEVGFATSDGTFQQV-SFANSISTIKGGTHVNYIS 178

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
             L + + + + K         +V     +      ++  + +P F SQTKE L     +
Sbjct: 179 DQLAKNLIAAITKKN----KGAAVKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPASK 234

Query: 354 -----SVVESFVNDGLSAWL------EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
                ++ E F+  G    +          ++   I+ +VL+ +  +   +  +    ++
Sbjct: 235 FGSRPTLSEEFMKKGCVPIVLVVLSSYRLLVQKSSIIDQVLNWAKFKADQQIKKTDGSKR 294

Query: 403 GVLDIA---------------SLPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQG 442
                +               +      +   +  +K  L L EGDSA      G A  G
Sbjct: 295 TRYFHSHSTEFVLNSIIVTGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVG 354

Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502
           R   N  + PLRGK+LNV  AR D+++ ++EI  +   +G    ++  +++ LRY +++I
Sbjct: 355 RD--NFGVFPLRGKLLNVREARHDQVMKNEEIQNIKKIMGLQHNKEYSNVSSLRYGRLMI 412

Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQ---YVKDEES 558
           MTD D DG+HI+ LL+ F     PSL+      +    P+  ++     Q   +V     
Sbjct: 413 MTDQDHDGSHIKGLLINFLDHFYPSLLKIPEFLVEFVTPIVRVSIFHQCQIPPHVTKGSQ 472

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
            +++       + IE   DSK   +K              +       +       +   
Sbjct: 473 RKNFFTIPEYEQWIESTPDSKKWTAKYYKGLGTSSDADAREYFSKMSKHMIPFATMEDEE 532

Query: 619 SGVFNCESDQEIN---VSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665
             + +    ++          +            E  +   IN   IL  
Sbjct: 533 RPLIDLAFSKKKADDRKDWLRQFKPGTYLDHNLEEIPYTDFINKELILFS 582


>gi|146189330|emb|CAL91133.1| DNA gyrase subunit beta [Bradyrhizobium japonicum]
 gi|224174500|emb|CAR92668.1| DNA gyrase, B subunit [Bradyrhizobium japonicum]
          Length = 222

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 159/224 (70%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGRRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASPETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|224174506|emb|CAR92671.1| DNA gyrase, B subunit [Bradyrhizobium yuanmingense]
 gi|224174508|emb|CAR92672.1| DNA gyrase, B subunit [Bradyrhizobium yuanmingense]
          Length = 222

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 161/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   MFY GG+E FV YL
Sbjct: 61  ASTETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMFYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK L+ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKALVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|291196211|emb|CBG14503.1| DNA gyrase subunit B [Pseudomonas otitidis]
          Length = 267

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 125/261 (47%), Positives = 180/261 (68%), Gaps = 4/261 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184
           VSVVNALS  L+L I+R G ++E  + +G+    L   G   + TGTEV F  S++ F+ 
Sbjct: 1   VSVVNALSEELRLTIRRAGQVWEQIYRHGVPQFALRAVGET-DGTGTEVHFKASAETFTN 59

Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
             F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV YL+ +K  + 
Sbjct: 60  IHFSWDILAKRLRELSFLNSGVGILLRDERSGKE--EMFKYEGGLKAFVEYLNTNKTIVN 117

Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           +     IQ   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y
Sbjct: 118 EVFHFNIQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNY 177

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           +E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +   
Sbjct: 178 IEQEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 237

Query: 364 LSAWLEEHPLEAKIIVKKVLD 384
            + +L E+P EAK +V K++D
Sbjct: 238 FADFLLENPNEAKAVVGKMID 258


>gi|183987592|gb|ACC65786.1| topoisomerase II [Pleurotus flabellatus]
          Length = 701

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 106/562 (18%), Positives = 205/562 (36%), Gaps = 37/562 (6%)

Query: 127 VVNALSSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFS 183
           + N  S    +    K     Y  ++   +       +T +   +  T+VTF P    F 
Sbjct: 1   LANIYSHEFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEEWTKVTFKPDLARFG 60

Query: 184 VQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           +   + DT   L+ R+ +++     V++ L D+R                A     +   
Sbjct: 61  MTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKVKNFKQYVEMYLDSAAADAKENSG 120

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
                    I   + +   ++    +DG  + V  F N+I    GGTH++ +   L + +
Sbjct: 121 GAAQAKA-SIIYEQISPRWEVGFATSDGTFQQV-SFANSISTIKGGTHVNYISDQLAKNL 178

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
            + + +         +V     +      ++  + +P F SQTKE L     +      +
Sbjct: 179 IAAITRKN----KGATVKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPASKFGSRPTL 234

Query: 361 NDGLSAWL-----------EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           ++                     ++   I+ +VL+ +  +   +  +    ++  L   +
Sbjct: 235 SEEFMKKGALPIVLVVLSSYRFLVQKSSIIDQVLNWAKFKADQQIKKTDGSKRTRLTGMA 294

Query: 410 LPGKLADCSERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERAR 464
                 +   +  +K  L L EGDSA      G A  GR   N  + PLRGK+LNV  AR
Sbjct: 295 KLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRD--NFGVFPLRGKLLNVREAR 352

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524
            D+++ ++EI  +   +G    ++  +++ LRY +++IMTD D DG+HI+ LL+ F    
Sbjct: 353 HDQIMKNEEIQNIKKIMGLQHNKEYSNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHF 412

Query: 525 MPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583
            PSL+      +    P+  +T+G   +        E +     +    +    +     
Sbjct: 413 YPSLLKIPEFLVEFVTPIVRVTKGNQRKNFFTIPEYEQW-----IESTPDSKKWTAKYYK 467

Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643
                +  D      K+ K   P       E+ +I   F+ +   +       +      
Sbjct: 468 GLGTSSDADAREYFSKMSKHMIPFATMEDEERPLIDLAFSKKKADDR-KDWLRQFKPGTY 526

Query: 644 FIAEKSEKSWHGSINNSDILVK 665
                 E  +   IN   IL  
Sbjct: 527 LDHNLEEIPYTDFINKELILFS 548


>gi|183987578|gb|ACC65779.1| topoisomerase II [Lyophyllum shimeji]
          Length = 692

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/557 (20%), Positives = 213/557 (38%), Gaps = 29/557 (5%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGN---IYEMSFINGILD-NPLVVTGSAGNDTGTEVTF 175
            +G G  + N  S    +    + N    Y+ ++ + +       +T +   +  T VTF
Sbjct: 1   RNGYGAKLANIYSHEFTVETA-DKNTQLKYKQTWTDNMSVCGKPKITKNGKGEEWTRVTF 59

Query: 176 LPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            P    F +   + DT   L+ R+ +++     V++ L D+R                A 
Sbjct: 60  KPDLKRFGMDKIDEDTAGLLRKRVYDMAGTVKDVKVFLNDERLKIKNFKQYVEMYLQSAH 119

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
               +         P  I   + +   ++A   ++G     + F N+I    GGTH++ +
Sbjct: 120 AEAAETSGGAAQAKPTVI-YEQISARWEIAFAVSEG-TFQFVSFANSISTTKGGTHVTYI 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
                 QI   +  +   K    +V     +      ++  + +P F SQTKE L     
Sbjct: 178 S----DQIAKNLVAAIAKKNKAATVKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPAS 233

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +   +  +++     +++       I+  +L+ +  +   +  R    ++  L   +   
Sbjct: 234 KFGTKPVLSEEFLKKVQKS-----SIIDNILNWAKYKADQQIKRTDGTKRSRLIGLTKLS 288

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKML 469
              +   +  K   L L EGDSA   A  G     R+N  + PLRGK+ NV  AR ++++
Sbjct: 289 DANNAGTKHAKNCTLILTEGDSAKALAVAGLGVVGRDNFGVFPLRGKLFNVREARHEQIM 348

Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529
            ++EI  +   +G    +D  +   LRY +++IMTD D DG+HI+ L++ F     PSL+
Sbjct: 349 KNEEIQNIKKIMGLQHNKDYTNTMSLRYGRLMIMTDQDHDGSHIKGLIINFLDHFYPSLL 408

Query: 530 HNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588
                 +    P+  +T+GK           E +L     S++ E         S +   
Sbjct: 409 KLPEFLVEFVTPIVRVTKGKQRHDFFTIPEYEQWLEETPSSDKWEAKYFKGLGTSTDADA 468

Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648
                 +K   +      + DK  I+ A      +   +   +    + L +RL      
Sbjct: 469 RDYFGHMKKHMIPFAPTQDGDKEHIDLAFSKKKADDRKEWLRHFKPGTYLDHRLE----- 523

Query: 649 SEKSWHGSINNSDILVK 665
            E  +   IN   IL  
Sbjct: 524 -EIPYSEFINKELILFS 539


>gi|224174518|emb|CAR92677.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 11950]
          Length = 222

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 160/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGRRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTETFKNIEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|284504201|ref|YP_003406916.1| DNA topoisomerase II [Marseillevirus]
 gi|282935639|gb|ADB03954.1| DNA topoisomerase II [Marseillevirus]
          Length = 1089

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 130/724 (17%), Positives = 243/724 (33%), Gaps = 81/724 (11%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDES----LEG-YADIITVTLNMD-GSCTVSDNGRGI 83
           M  G  +   GL  + YE++ NA+D      + G     + V+L+ + G CTV ++G  I
Sbjct: 41  MLFGTLEFPEGLERIFYEIVSNAVDNFFRSSVSGIPMKSVKVSLDRETGYCTVWNDGAHI 100

Query: 84  PTDLHK-----EEG------ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
             +  +     E G      +  AE+      A   +N    + + G +G+G  + +  S
Sbjct: 101 SVEKKEYSYTDELGNTSSSLLYPAELFFGYSKASTNYNDDEVRKTSGRNGLGAKLTSIFS 160

Query: 133 SWLKLRIKREGN--IYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
               +R        I++  F + +    P V+         TEV FLP    F +  +  
Sbjct: 161 KHFVVRCFDPEKQRIFQQEFFDNLTRRTPPVIEKCTKKKGWTEVRFLPDFARFGLDGWT- 219

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           + L  R ++          +L D         +   +      +            + + 
Sbjct: 220 EPLLSRFQK----------TLRDASLVTGLSASFNEEKFSFQTLPEYVALFSGSNPNFLC 269

Query: 250 IQGSRDNISI---DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
           +       ++   +  +   +   E  L F N +    G    +   + L   + ++  K
Sbjct: 270 LSSPDSRFALLEKNPELVPTEPSQETSLSFVNGLEVFTGVHVNAWKNAVLMPLLKAFNAK 329

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS-VVESFVNDGLS 365
                K K S+   +C   F   +   +  P F+SQTK +L S   ++  V       L 
Sbjct: 330 QKAEGKPKASMKQLECF--FHLFVVCDLDKPEFTSQTKHELASPTPKTTKVSPEQIKKLM 387

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
            W                       +    +   + K ++   +              + 
Sbjct: 388 KW----------------GFVQELSSRLDPKKTKKTKKLVLDLTKVDDAQLAGTSRSAEC 431

Query: 426 ELFLVEGDSAGGSAKQG----RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            L L EGDSA   A  G    + RE      L+GK+LN   A    +  ++E+  L   L
Sbjct: 432 ILILTEGDSAKTLAVSGFTSLKDRERYGAFALKGKVLNTTNATQKTIGKNKELELLKNVL 491

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G            LRY K+++M DAD DG HI  L+L F  +  P L+  GF+  ++ P+
Sbjct: 492 GL----SKDLGKTLRYGKVLLMCDADEDGKHIEGLVLNFLHKHYPELLEKGFVQSLRTPI 547

Query: 542 YGITRGKSLQYVKD----------EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591
                GK  ++                 ++  +            D +  +S+  L +++
Sbjct: 548 LKAFLGKREEWFFSTTKFEEWLSKNPGHKNLKVQYFKGLGSSRPEDGRKYLSEQKLVSYV 607

Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651
            D  +       F  N            G    +   E  +SL+  +  RL+     + +
Sbjct: 608 ADGTEGAWFDLAFSKNKSNERKTWLA--GSLTPDETYEGELSLSDFIDKRLSTYHRANNR 665

Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711
               S+ +     +R         VL      +   K K+   +R+     ++       
Sbjct: 666 RSIPSVFDGLKPSQRK--------VLYACFSSNIIGKNKKKHVDRLTGEVASVAGYHHGE 717

Query: 712 DKIK 715
             + 
Sbjct: 718 KSLT 721


>gi|118419953|gb|ABK88247.1| DNA gyrase subunit B [Alcanivorax balearicus]
          Length = 279

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 146/282 (51%), Positives = 201/282 (71%), Gaps = 3/282 (1%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L I+R G ++E  + +G+ + PL V GS    +GT + F PS   F+   F+YD L  RL
Sbjct: 1   LTIRRHGKVHEQVYHDGVPEKPLDVVGSTE-SSGTTIRFRPSPATFNNIQFHYDILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V+I L+D+RS +       Y+GG+ AFV+YL+++K  L Q         D 
Sbjct: 60  RELSFLNSGVRIHLLDERSGDE--DVFEYEGGLSAFVTYLNQNKSSLNQVFHFQVDREDG 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++AM+WND Y EN+ C+TNNIPQ+DGGTHL+G R+ALTR + +Y+EK    K++K +
Sbjct: 118 IGVEVAMQWNDSYQENIYCYTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGFLKREKAN 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE  + +    +L EHP+E+K
Sbjct: 178 PSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMTERFQDFLLEHPVESK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
            IV+K++DA+  RDAAR+AR++TRRKG LDIA LPGKLADC 
Sbjct: 238 NIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQ 279


>gi|89143204|emb|CAJ57499.1| DNA gyrase subunit B [Microbacterium oxydans]
          Length = 306

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 132/306 (43%), Positives = 185/306 (60%), Gaps = 17/306 (5%)

Query: 198 ELSFLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFVSY--LDRHKKP 242
           +++FLN  ++I L D+R               +      FY+ G+  +V Y    RH + 
Sbjct: 1   QMAFLNKGLRIELRDERESSAYEVEEDGATVTKQPGDVFFYERGLVDYVEYLNKVRHAEV 60

Query: 243 LMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +    I  +       IS+++AM+W   Y ENV  + N I   +GGTH  G R+ALT  +
Sbjct: 61  VNDEIIAFESEDTERKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLV 120

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y   +   K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+  V
Sbjct: 121 NKYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVV 180

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L  WLE +P +AK I++K +DA+  R AAR+AR+  RRK V + A++P KL DC+ +
Sbjct: 181 GDQLGDWLERNPNQAKNIIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSK 240

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L ++E+  +I A
Sbjct: 241 DPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNKEVQAMIQA 300

Query: 481 LGTGIG 486
            GTGIG
Sbjct: 301 FGTGIG 306


>gi|11559435|dbj|BAB18784.1| type II DNA topoisomerase [Porphyra tenera]
          Length = 382

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/405 (22%), Positives = 152/405 (37%), Gaps = 34/405 (8%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           G GIP  +H +EG+   E+I   L     ++    KV GG +G G  + N  S+   +  
Sbjct: 1   GAGIPVAMHAKEGVYVPELIFGHLLTSSNYDDGEKKVVGGRNGYGAKLANIFSTRFVVET 60

Query: 140 KRE--GNIYEMSFINGILD--NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TL 192
                G  Y+ +F   ++D   P +   +   DT T +TF P    F +   N D    L
Sbjct: 61  ADASSGKTYKQTFKRNMMDRGTPAIRASAKPRDTWTRITFEPDLAKFGMDSLNEDAVAVL 120

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           Q R+ +++ +   + + L   +                  +   D    P +      + 
Sbjct: 121 QMRVVDMAGVVPGIAVYLNGTKLKINSFKQYV-------DLHLADAPDAPRIHDATSGR- 172

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
                  ++ +   DG       F N+I    GGTH +     L  +I  ++ K      
Sbjct: 173 ------WEVVVSLIDGQLTQT-SFVNSIATTKGGTHFNHDGGQLVSRIQEHIAKK----H 221

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               V     +   +  +   + +P F SQTKE L S       +    D ++  L +  
Sbjct: 222 KTLKVKPFQIKSQLSIYVKCLVENPAFDSQTKEMLTSRPASFGSKWVCPDRMAKDLIKSG 281

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +V+ VL  +  +     A+    ++  +              RD  K  L L EG
Sbjct: 282 -----VVESVLSLAESQQVKELAKTDGGKRARVSGIPKLDDANLAGTRDSAKCTLILTEG 336

Query: 433 DSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEI 474
           DSA   A  G S   R+   + PLRGK+LNV  A   +++ + EI
Sbjct: 337 DSAKALAISGLSVVGRDYYGVFPLRGKLLNVREATHKQIMDNAEI 381


>gi|146189328|emb|CAL91132.1| DNA gyrase subunit beta [Bradyrhizobium elkanii]
 gi|224174498|emb|CAR92667.1| DNA gyrase, B subunit [Bradyrhizobium elkanii]
 gi|331029403|gb|AEC49851.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6160]
          Length = 222

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 159/224 (70%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|158254107|gb|AAI54369.1| Top2a protein [Danio rerio]
          Length = 349

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/318 (20%), Positives = 118/318 (37%), Gaps = 38/318 (11%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 33  YQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTGMNCRDITFVPGLYKIFDEILVNAA 92

Query: 54  DESLE-GYADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D        + I VT++ +  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 93  DNKQRDKTMNCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 152

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KREGNI-YEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S    +    RE    ++ ++ + +             D 
Sbjct: 153 DEKKVTGGRNGYGAKLCNIFSLKFTVETACRESKRCFKQTWFDNMGRAGESKIKPFDGDD 212

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQ---HRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + DT+     R  +++     V++ L  KR            
Sbjct: 213 YTCITFQPDLAKFKMQALDKDTVALLTRRAYDIAGSTKGVRVLLNGKR---------LPI 263

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
                +V    + K     SP+ +     N   ++ +  ++   + V  F N+I    GG
Sbjct: 264 NNFRTYVDLYVKDKVDETGSPLTVVHEMVNERWEVCLTLSEKGFQQV-SFVNSIATTKGG 322

Query: 287 THLSGLRSALTRQITSYV 304
            H   +   +  ++    
Sbjct: 323 RHTDYVADQIVSKLIEVA 340


>gi|15919890|dbj|BAB69454.1| gyrase subunitB [Salmonella paratyphi]
          Length = 199

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 122/185 (65%), Positives = 150/185 (81%)

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 15  MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 74

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLL
Sbjct: 75  LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 134

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
           LTFF+RQMP ++  G +YI +PPLY + +GK  QY+KD+E+++ Y I+ +L         
Sbjct: 135 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHANA 194

Query: 578 SKGVI 582
               +
Sbjct: 195 HAPAL 199


>gi|302122559|gb|ADK92947.1| topoisomerase IV subunit B [Geobacillus gargensis]
          Length = 269

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 107/273 (39%), Positives = 165/273 (60%), Gaps = 7/273 (2%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS WL + I R+G IY   F +G      L   G   N TGT + F P   IF+   
Sbjct: 1   VNALSEWLGVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDPTIFTTTV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+TL  RLRE +FL   ++I L+D+R+         Y+ GIEAFV+YL+  K  L   
Sbjct: 60  FDYETLSERLRESAFLLKGLKIELVDERTG--MHDVFHYENGIEAFVAYLNEEKDVLHP- 116

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G +  I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR    Y  +
Sbjct: 117 VVYFSGEQHGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARR 176

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGL 364
               K+  +++ G D REG ++V+S+++P+   +F  QTK KL +SE RS V++ V++ L
Sbjct: 177 VGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEQL 236

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           + +L+E+P  + +++KK + A   R+AAR+AR+
Sbjct: 237 TYFLQENPDVSTMLIKKAIRAYQAREAARKARE 269


>gi|225629678|ref|ZP_03787659.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591468|gb|EEH12527.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 288

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/299 (36%), Positives = 169/299 (56%), Gaps = 11/299 (3%)

Query: 434 SAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN 493
           SAGG+AKQGR+R+ QA+L LRGKILNVER   D++ SS EIG+LITA+G GIG + FDI 
Sbjct: 1   SAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIE 60

Query: 494 KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYV 553
           K RYHKIIIMTDADVDG+HIRTL+LTFFFR M  +I  G+LYI +PPLY +T+     Y+
Sbjct: 61  KARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNAKDTYI 120

Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613
           KD+E+ E+Y+IN ++         ++     NDLR  ++  + I  + K++     +  +
Sbjct: 121 KDDETFEEYIINSAVKRLTLSSTATE----FNDLRLILNKCVGISNISKNYDREIPQNLL 176

Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQE 673
           E  +I         ++  +S A ++   L  +  +            +I + ++ +G+ +
Sbjct: 177 ESLLIL-------SKKNALSSADEILKYLKLMYSEYTWEVEIKDEEKEIHISKLFQGLAD 229

Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
           +++   S +     +      + I   +     L     +I+IT P +L   I   G+K
Sbjct: 230 KYIFALSMLEGKDMQNILSLLDGISNLFNGDSFLKSQETEIRITSPSTLAKIIMDYGKK 288


>gi|115500950|dbj|BAF34145.1| B subunit gyrase [Azomonas insignis]
          Length = 198

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 98/201 (48%), Positives = 136/201 (67%), Gaps = 3/201 (1%)

Query: 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS 164
           AGG+F+  SYKV GGLHGVGVSVVNALS  L L ++R+G ++E  + +G+   PL   G 
Sbjct: 1   AGGRFDDNSYKVYGGLHGVGVSVVNALSEELLLTVRRDGKVWEQVYKHGVPQAPLAAIGE 60

Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224
                GTE+ F PS++ F    F++D L  RLRELSFLNS V I L D+R+ +       
Sbjct: 61  TEGA-GTEIRFKPSAETFKNIHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFK 117

Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284
           Y+GG++AFV YL+ +K  + Q         D + +++A++WNDG++EN+LCFTNNIPQ+D
Sbjct: 118 YEGGLKAFVEYLNTNKTIVNQIFHFNIQREDGVGVEVALQWNDGFNENILCFTNNIPQRD 177

Query: 285 GGTHLSGLRSALTRQITSYVE 305
           GGTHL+G RSALT  + +Y+E
Sbjct: 178 GGTHLAGFRSALTPNLNNYIE 198


>gi|295147502|gb|ADF80582.1| DNA topoisomerase IV subunit B [Geobacillus sp. 49]
          Length = 288

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 108/273 (39%), Positives = 166/273 (60%), Gaps = 7/273 (2%)

Query: 128 VNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VNALS WL + I R+G IY   F +G      L   G   N TGT + F P   IFS   
Sbjct: 1   VNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDPTIFSTTV 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           F+Y+TL  RLRE +FL   ++I L+D+R+        +Y+ GIEAFV+YL+  K  L   
Sbjct: 60  FDYETLSERLRESAFLLKGLKIELVDERTG--MREVFYYENGIEAFVAYLNEEKDVLHP- 116

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
            +   G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR    Y  +
Sbjct: 117 VVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARR 176

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGL 364
               K+  +++ G D REG ++V+S+++P+   +F  QTK KL +SE RS V++ V++ L
Sbjct: 177 VGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEQL 236

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
             +L+E+P  + +++KK + A   R+AAR+AR+
Sbjct: 237 MYFLQENPDVSAMLIKKAIRAYQAREAARKARE 269


>gi|89143196|emb|CAJ57495.1| DNA gyrase subunit B [Microbacterium liquefaciens]
          Length = 306

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 130/306 (42%), Positives = 184/306 (60%), Gaps = 17/306 (5%)

Query: 198 ELSFLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFVSY--LDRHKKP 242
           +++FLN  ++I L D+R               +      FY+ G+  +V Y    RH + 
Sbjct: 1   QMAFLNKGLRIELRDERESSAYEVEEDGSTVTKQPGDVFFYERGLVDYVEYLNKVRHAEV 60

Query: 243 LMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +    I  +       IS+++AM+W   Y ENV  + N I   +GGTH  G R+ALT  +
Sbjct: 61  VNDEIIAFESEDTERKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLV 120

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y   +   K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+  V
Sbjct: 121 NKYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVV 180

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L  W E +P +AK +++K +DA+  R AAR+AR+  RRK V + A++P KL DC+ +
Sbjct: 181 GDQLGDWFERNPNQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSK 240

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           DP  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L ++E+  +I A
Sbjct: 241 DPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNKEVQAMIQA 300

Query: 481 LGTGIG 486
            GTGIG
Sbjct: 301 FGTGIG 306


>gi|224174536|emb|CAR92686.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10705]
 gi|224174538|emb|CAR92687.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10706]
          Length = 222

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 160/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGEAPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTETFKNVEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|18916408|dbj|BAB85500.1| DNA gyrase subunit B [Rhodopseudomonas palustris ATCC 17001]
          Length = 223

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 127/225 (56%), Positives = 161/225 (71%), Gaps = 2/225 (0%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
           Q SYKVSGGLHGVGVSVVNALSS L LR+ R    + + F +G    PL V G A    G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRG 60

Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230
           TEVTF  S++ F+  ++++ TL+HRLREL+FLNS V I L D R    +   M Y+GG+ 
Sbjct: 61  TEVTFYASAETFTHIEYDFATLEHRLRELAFLNSGVYIVLSDMRHAVEKREEMRYEGGVT 120

Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290
            FV YLDR+KKP++ +P+ I    + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+
Sbjct: 121 EFVKYLDRNKKPIVPTPVVIGAELNGIMVEAALWWNDTYHENVLCFTNNIPQRDGGTHLA 180

Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           G R+ALTRQIT Y E   GSKK+K ++ GDDCREG T+VLS+K+P
Sbjct: 181 GFRAALTRQITGYAE--AGSKKEKVALTGDDCREGLTAVLSVKVP 223


>gi|310707421|gb|ADP08981.1| gyrase B [Leptothrix ochracea]
          Length = 390

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 126/400 (31%), Positives = 189/400 (47%), Gaps = 25/400 (6%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPSSDIFS 183
           SV NALS+ L + + RE  + ++ F  G +  PL +     A   +GT V   P +  F 
Sbjct: 1   SVTNALSTRLAVTVWREKQVAQLVFSGGDVIEPLTLRPAERAERKSGTAVRVWPDAKYFE 60

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS--------- 234
             +     L H LR  + L   V ++L  +++ E       YKGG+  ++          
Sbjct: 61  SAELPRAELIHLLRSKAVLMPGVTVTLSTEKTGETLT--WLYKGGLRDYLQQSLLAEPLI 118

Query: 235 --YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
             +   H     +S    +G      +  A +           + N IP   GGTH +GL
Sbjct: 119 PLFEGAHHASSHESENFAEGEGAAWCVAFAEQG----QSLRESYVNLIPTVAGGTHEAGL 174

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           +  L   I ++++           ++ DD     + VLS K+ DP+F  QTKE+L S + 
Sbjct: 175 KEGLFSAIKAFIDMH-SLLPKGVKLMPDDVFGRASFVLSAKVLDPQFQGQTKERLNSRDA 233

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
             +V ++V      WL +H    K + + V+  +  R  A +      ++    +A LPG
Sbjct: 234 LRLVSAYVKPAFDLWLGQHVEHGKKLAELVIRQAQARQKAGQK---VEKRKGSGVAVLPG 290

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KL DC  RD   +ELFLVEGDSAGGSAK GR++E QAILPLRGK+LN      D++ ++ 
Sbjct: 291 KLTDCESRDLADNELFLVEGDSAGGSAKMGRNKETQAILPLRGKVLNTWEVDRDRLFANN 350

Query: 473 EIGTLITALGTGIGQDSFDIN--KLRYHKIIIMTDADVDG 510
           EI  +  A+G          +   LRY KI IMTDA+ DG
Sbjct: 351 EIHDIAVAIGVDPHAAGDTPDLSNLRYGKICIMTDAERDG 390


>gi|224174510|emb|CAR92673.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10727]
 gi|224174512|emb|CAR92674.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 15269]
          Length = 222

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 159/224 (70%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL + G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKIVGDAPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S+  F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTQTFKNVEYDFATLEHRLRELAFLNSGVNIILSDTRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|223674666|gb|ACN13029.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 213

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 107/214 (50%), Positives = 147/214 (68%), Gaps = 3/214 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT++
Sbjct: 1   YKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV
Sbjct: 60  HFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G R
Sbjct: 118 EYLNTNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           SALTR + +Y+E+   +KK K +  GDD REG T
Sbjct: 178 SALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 211


>gi|224174524|emb|CAR92680.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 11807]
          Length = 222

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 128/224 (57%), Positives = 165/224 (73%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L+LRI RE   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLELRIWREDKEHLIVFAHGDAVAPLQVVGDAPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F + +++Y TL+HRLREL+FLNS V I L D R P  +   MFY GG+E FV YL
Sbjct: 61  ASTETFKIVEYDYATLEHRLRELAFLNSGVHIILSDMRHPVEKREEMFYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPNPIMVRSEANGITVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|224174522|emb|CAR92679.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10300]
          Length = 222

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 126/224 (56%), Positives = 163/224 (72%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L+LRI RE   + + F +G    PL V G      GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLELRIWREDKEHLIVFAHGDAVAPLQVVGDTPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F + +++Y TL+HRLREL+FLNS V I L D R    +   MFY GG+E FV YL
Sbjct: 61  ASTETFKIIEYDYATLEHRLRELAFLNSGVHIILSDMRHAVEKREEMFYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPNPIMVRSEANGITVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|224174562|emb|CAR92699.1| DNA gyrase, B subunit [Bradyrhizobium sp. RLA09]
 gi|224174564|emb|CAR92700.1| DNA gyrase, B subunit [Bradyrhizobium sp. RLA10]
          Length = 222

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 161/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PLVV G A    GTEVTF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPGKRGTEVTFQ 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I+L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTETFKNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|157326777|gb|ABV44501.1| DNA gyrase subunit beta [Brevundimonas intermedia]
          Length = 130

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 82/130 (63%), Positives = 94/130 (72%), Gaps = 6/130 (4%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVS VNALS+WLKL I
Sbjct: 1   GRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSCVNALSTWLKLVI 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGND------TGTEVTFLPSSDIFSVQDFNYDTLQ 193
            R G  +EM F  G     L VTG A         +GT+VTF PS   F+  DF+  TL+
Sbjct: 61  FRNGQRHEMKFERGDTVESLRVTGEAPMRENGKVLSGTQVTFYPSVTTFAHIDFDLKTLE 120

Query: 194 HRLRELSFLN 203
           HRLREL+FLN
Sbjct: 121 HRLRELAFLN 130


>gi|224174530|emb|CAR92683.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 11797]
 gi|224174532|emb|CAR92684.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 8300]
 gi|224174534|emb|CAR92685.1| DNA gyrase, B subunit [Blastobacter denitrificans]
          Length = 222

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 127/224 (56%), Positives = 163/224 (72%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L+LRI RE   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLQLRIWREDKEHLIEFAHGDAVAPLKVVGEAQGRRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F + +++Y TL+HRLREL+FLNS V I L D R    +   MFY GG+E FV YL
Sbjct: 61  ASTETFKMVEYDYATLEHRLRELAFLNSGVHIVLSDMRHAVEKREEMFYSGGVEEFVRYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ SPI ++   + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPSPIMVRSEVNGITVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y +    +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYADAH--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|290795002|gb|ADD64519.1| DNA gyrase B [Vibrio sp. F10]
          Length = 276

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 149/278 (53%), Positives = 201/278 (72%), Gaps = 3/278 (1%)

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197
            I R G I++ ++ +G    PL  TG     TGTE+ F PS + F+  +F+YD L  RLR
Sbjct: 1   TIHRGGKIHKQTYQHGEPQAPLAATGDTE-RTGTEIRFWPSEETFTNIEFHYDILAKRLR 59

Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN- 256
           ELSFLNS V I LID+R  E +     Y+GGI+AFV +L+ +K P++Q        RD+ 
Sbjct: 60  ELSFLNSGVSIKLIDER-EEDKMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+G RSALTR + S+++K   SKK K S
Sbjct: 119 ITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRSALTRTLNSFMDKEGFSKKAKTS 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK
Sbjct: 179 TSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESVMGEKLSEFLIENPGEAK 238

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           I+  K++DA+  RDAAR+AR++TRRKG LD+A LPGKL
Sbjct: 239 IVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKL 276


>gi|164456727|dbj|BAF97856.1| gyrase B subunit [Vibrio salmonicida]
          Length = 258

 Score =  197 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 128/260 (49%), Positives = 178/260 (68%), Gaps = 4/260 (1%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
            ++L I R G I++  + +G+   PL V G   + TGT++ F PS   F+  +F YD L 
Sbjct: 1   KVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANIEFVYDILA 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLRELSFLNS V I L D R  E +     ++GGI+AFV++L+R+K P+ Q        
Sbjct: 60  KRLRELSFLNSGVSIRLQDMR-EEDKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDSE 118

Query: 254 RDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
           R    I +++AM+WND Y EN+ C+TNNIPQ+DGG HLSG RSALTR + S+++K   SK
Sbjct: 119 RKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSK 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+
Sbjct: 179 KAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAEN 238

Query: 372 PLEAKIIVKKVLDASMVRDA 391
           P EAK++  K++DA+  R+A
Sbjct: 239 PGEAKMVCSKIIDAARAREA 258


>gi|224174490|emb|CAR92663.1| DNA gyrase, B subunit [Bradyrhizobium betae]
 gi|224174492|emb|CAR92664.1| DNA gyrase, B subunit [Bradyrhizobium betae]
          Length = 222

 Score =  197 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 160/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PLVV G A    GTEVTF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPGRRGTEVTFQ 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I+L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTETFKNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E    +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAH--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|224174502|emb|CAR92669.1| DNA gyrase, B subunit [Bradyrhizobium liaoningense]
 gi|224174504|emb|CAR92670.1| DNA gyrase, B subunit [Bradyrhizobium liaoningense]
          Length = 222

 Score =  197 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 161/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G A    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGRRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++ + + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRSAANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|58415302|emb|CAH04909.1| DNA gyrase subunit B [Cryobacterium psychrophilum]
 gi|117675819|emb|CAL69180.1| DNA gyrase subunit B [Cryobacterium psychrophilum]
          Length = 301

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 186/301 (61%), Gaps = 10/301 (3%)

Query: 198 ELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDRHKKPL--MQSPIR 249
           +++FLN  + + + D+R      + E       Y+ G+  +V YL+R KK        I 
Sbjct: 1   QMAFLNKGLHLKISDERPDHADDNGEVVTNAFMYEQGLVDYVQYLNRSKKADLVNDEIIS 60

Query: 250 IQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
            +    +  +++++AM+W   Y E+V  + N I   +GGTH  G R+ALT  +  Y  + 
Sbjct: 61  FEWEDHDKKMALEVAMQWTTAYTESVHTYANTINTHEGGTHEEGFRAALTTLVNRYAREK 120

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
              K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+    + LS W
Sbjct: 121 GILKEKDDNLTGDDVREGLTAVVSIKLAEPQFEGQTKTKLGNTEAKTFVQRVAGEQLSHW 180

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
              +P  A+ I++K L AS  R AAR+AR+  RRKG+L+   +PGKL DC  +DP  SE+
Sbjct: 181 FNMNPNPAREIIRKALQASNARMAARKARETARRKGLLEGGGMPGKLKDCQSKDPSLSEI 240

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L + E+  +ITA G GIG+
Sbjct: 241 FIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMITAFGAGIGE 300

Query: 488 D 488
           +
Sbjct: 301 E 301


>gi|296061168|emb|CBJ55895.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|296061170|emb|CBJ55896.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|296061172|emb|CBJ55897.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|296061174|emb|CBJ55898.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|296061176|emb|CBJ55899.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|296061178|emb|CBJ55900.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|296061180|emb|CBJ55901.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|296061182|emb|CBJ55902.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|296061184|emb|CBJ55903.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|296061186|emb|CBJ55904.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
 gi|296061188|emb|CBJ55905.1| DNA gyrase subunit B [Xanthomonas arboricola pv. juglandis]
          Length = 258

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 116/257 (45%), Gaps = 7/257 (2%)

Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564
           DADVDG+HIRTLLLTFF+RQMP LI  G++YI  PPLY + +GKS  Y+KD+ +L  YL 
Sbjct: 1   DADVDGSHIRTLLLTFFYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLA 60

Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624
           + ++     +    +  I+   L   +      ++ I      +D   +   +     + 
Sbjct: 61  SNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDLPPLDV 120

Query: 625 ESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFVL 677
           +  Q              + NR      + +  +  + +  ++ ++  R   G +   VL
Sbjct: 121 DKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEEFTQVL 180

Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737
              +  S   +  R  S  + +       ++       IT        +    ++G  +Q
Sbjct: 181 PMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKRGRQVQ 240

Query: 738 RYKGLGEMNASQLWETT 754
           R+KGLGEMNA QLWETT
Sbjct: 241 RFKGLGEMNAEQLWETT 257


>gi|223674742|gb|ACN13067.1| DNA gyrase subunit B [Pseudomonas sp. 2151]
          Length = 211

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 106/214 (49%), Positives = 145/214 (67%), Gaps = 3/214 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++
Sbjct: 1   YKVSGGLHGVGVSVVNALSEILVLTVRRSGKIWEQTYVHGVPQAPMAIVGESE-TTGTQI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV
Sbjct: 60  HFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G R
Sbjct: 118 DYLNTNKTPVNQVFHFSVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           SALTR + +Y+E    +KK K +  GDD REG T
Sbjct: 178 SALTRNLNTYIEAEGLAKKHKVATTGDDAREGLT 211


>gi|297595840|gb|ADI48229.1| DNA gyrase B [Erwinia sp. DAPP-PG 672]
          Length = 284

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 150/287 (52%), Positives = 206/287 (71%), Gaps = 4/287 (1%)

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRE 198
           +RE  +++  +++G+   PL VTG   + TGT V F PS + F+   DF Y+ L  RLRE
Sbjct: 1   RRERKVHQQIYVHGVPQAPLSVTGET-DITGTRVRFWPSHETFTNVTDFEYEILAKRLRE 59

Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258
           LSFLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I 
Sbjct: 60  LSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIG 117

Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318
           +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + +Y++K   SKK K S  
Sbjct: 118 VEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSAT 177

Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378
           GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+
Sbjct: 178 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIV 237

Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
           V K++DA+  R+AARRAR++TRRKG LD+A LPGKLADC ERDP  S
Sbjct: 238 VGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAMS 284


>gi|172044718|gb|ACB69924.1| DNA gyrase subunit B [Halomonas sp. V3a-3]
 gi|172044720|gb|ACB69925.1| DNA gyrase subunit B [Halomonas sp. V3a]
          Length = 258

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 159/258 (61%), Positives = 200/258 (77%)

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V +++ +K PL           D I++++AM+WN+G+ EN+ C+TNNIPQ+DGGTHL+G 
Sbjct: 1   VDHINTNKAPLNPVFHFEMEREDGIAVEVAMQWNEGFAENIFCYTNNIPQRDGGTHLAGF 60

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+ALTR + SY+E     KK K    GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 61  RAALTRTLNSYIEAEGLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 120

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           ++ VE  +    S +L E P EAK IV K+LDA+  R+AAR+ARD+TRRKG LDIA LPG
Sbjct: 121 KTAVEQEMGRLFSEYLIEKPNEAKGIVNKMLDAARAREAARKARDMTRRKGALDIAGLPG 180

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           KLADC E+DP  SEL+LVEGDSAGGSAKQGR R  QAILPL+GKILNVE+ARFDKMLSS 
Sbjct: 181 KLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSA 240

Query: 473 EIGTLITALGTGIGQDSF 490
           E+GTLITALG GIG++ F
Sbjct: 241 EVGTLITALGCGIGREEF 258


>gi|323652532|gb|ADX98517.1| gyrase B [Candidatus Burkholderia nigropunctata]
          Length = 196

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)

Query: 86  DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145
           D H +   SAAE++MT LHAGGKF+Q SYKVSGGLHGVGVS VNALS WL+L ++R+G  
Sbjct: 9   DKH-DPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTVRRDGKK 67

Query: 146 YEMSFINGILD------------NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
           + M F  G++             +P+ V G    + GTEV FL    IF   +F+YD L 
Sbjct: 68  HFMEFARGVVQNREIVEEDGIQYSPMPVVGDTE-NRGTEVHFLADQTIFGNVEFHYDILA 126

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            R+RELSFLN+ V+I L D+R+ +       + GG++ FV Y+++ K  L  +     G 
Sbjct: 127 KRMRELSFLNNGVRIRLTDQRTGKE--DDFAFAGGVKGFVEYINKAKTVLHPTVFHATGE 184

Query: 254 RDNISIDLAMRW 265
           R+N+++++AM+W
Sbjct: 185 RENVTVEVAMQW 196


>gi|322510996|gb|ADX06309.1| DNA gyrase B domain-containing protein [Organic Lake phycodnavirus
           2]
          Length = 483

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 93/504 (18%), Positives = 164/504 (32%), Gaps = 64/504 (12%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDT--------------------DGESGLHHMIYEVLDN 51
           A+  Q     + +   P  YIG                      D   GL  +  E + N
Sbjct: 5   ANQYQKKTDKEHILDNPDTYIGSIENVNGPMYVYEDGHIVNKNIDYNPGLFKLFDEGIVN 64

Query: 52  AIDESLE-----GYADI------ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100
             D  +       + D       I + +  D   T+ +NG GI  + H    I   E+I 
Sbjct: 65  CRDHVVRMLQKKEHDDTTQLVNMIDIQI-QDNMITLMNNGNGIDIEKHPTYDIWIPELIF 123

Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI--KREGNIYEMSFINGILDNP 158
             L     +N+   K++GG +G G  +V   S++  +          Y   F   +    
Sbjct: 124 GHLRTSTNYNKDEEKITGGKNGFGFKLVLIWSTYGMIETIDYTRKLKYTQEFETNLDVVH 183

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218
                       T V F P      + + + D +    R +  +                
Sbjct: 184 KPSITKCSKKPYTLVKFKPDYKRLGLNELSKDMIALFQRRVYDIAGITT----------- 232

Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278
           +++ +   G      ++            I  Q  R + SI L            + F N
Sbjct: 233 KDVKVKLNGEALDVKNFNHYVDLYNDCDKISEQHERWSYSICL------SEEFKQVSFVN 286

Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338
            I    GG H+  +   + +++  Y+EK       K  V     +E     L+  + +P 
Sbjct: 287 GIFTSKGGKHVDYIVQQIVKKMIVYIEKKK-----KVDVKPSIIKEQLHIFLNCTIVNPS 341

Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           F SQTK+ L +   +      V+D     L +       I++   + S +++     +  
Sbjct: 342 FDSQTKDYLNTPPSKFGSSCVVSDKFIEKLAKQG-----IMENSCELSHIKEKNNSKKTD 396

Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR---SRENQAILPLRG 455
             +   +              +D K   L L EGDSA      G     R    + P++G
Sbjct: 397 GNKNKTIRGIPKLVDANYAGTKDSKLCTLILCEGDSAKAGILSGLTPSDRNIIGVYPMKG 456

Query: 456 KILNVERARFDKMLSSQEIGTLIT 479
           K+LNV      K+  ++EI  +  
Sbjct: 457 KLLNVRGETTKKINENKEIIEIKK 480


>gi|58415320|emb|CAH04918.1| DNA gyrase subunit B [Agromyces ramosus]
          Length = 308

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 131/308 (42%), Positives = 187/308 (60%), Gaps = 21/308 (6%)

Query: 196 LRELSFLNSSVQISLIDKRSPE-----------------PREITMFYKGGIEAFVSYLDR 238
            ++ +FLN  ++I+L D RS                   PR  T  Y+ G+  +V YL+R
Sbjct: 1   FQQYAFLNKGLRITLTDLRSGHVDIDPDDTAESVTDAAAPRTDTFLYERGLVDYVEYLNR 60

Query: 239 HKKPL--MQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294
            KK        I  +       I++++AM+W   Y E+V  + N I   +GGTH  G R+
Sbjct: 61  SKKTDLVNDEIISFESEDTDRKIALEVAMQWTTAYTESVHTYANTINTHEGGTHEEGFRA 120

Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
           ALT  I  Y  +    K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E +S
Sbjct: 121 ALTTLINRYAREKGILKEKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAKS 180

Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
            V+    D L  W E +P +A+ I++K + A+  R AAR+AR+ TRRKG+L+   +PGKL
Sbjct: 181 FVQKVTGDQLGDWFERNPTQARDIIRKAIQAATARIAARKAREATRRKGLLESGGMPGKL 240

Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474
            DCS +DP  SE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L++ E+
Sbjct: 241 KDCSSKDPSISEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALANNEV 300

Query: 475 GTLITALG 482
             +ITA G
Sbjct: 301 QAMITAFG 308


>gi|89143198|emb|CAJ57496.1| DNA gyrase subunit B [Microbacterium laevaniformans]
          Length = 309

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 125/308 (40%), Positives = 187/308 (60%), Gaps = 18/308 (5%)

Query: 195 RLRELSFLNSSVQISLID--------------KRSPEPREITMFYKGGIEAFVSYLDRHK 240
           R ++ +FLN  ++I+L D              +   +       Y+ G+  +V YL++ +
Sbjct: 2   RFQQTAFLNKGLRITLSDLRPSSAYLVDGEDGQAVEKQPFDDFHYERGLVDYVEYLNKIR 61

Query: 241 KPLMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           K  + +   I+        +IS++LAM+W   Y ENV  F N I   +GGTH  G R+A+
Sbjct: 62  KAEVVNDEIIEVESEDTERHISLELAMQWTTSYTENVFTFANTINTHEGGTHEEGFRAAM 121

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
           T  I  Y  +    K+   ++ G+D REG T+V+S+K+ +P+F  QTK KL ++E ++ V
Sbjct: 122 TTYINKYAREKGLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFV 181

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
           +  V D L+ WL+ +P +AK ++ K +DA+  R AAR+AR+  RRK V + AS+P KL D
Sbjct: 182 QKVVGDQLTDWLDRNPAQAKRVIMKAIDAATARLAARKARETARRKSVFESASMPDKLKD 241

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
           C+ +DP  SE+FLVEGDSAGGSA +GR  E QAIL LRGK+LNVE+AR D+ L + EI  
Sbjct: 242 CTSKDPSISEIFLVEGDSAGGSAVRGRDPETQAILSLRGKVLNVEKARLDRALGNNEIQA 301

Query: 477 LITALGTG 484
           +I+A G G
Sbjct: 302 IISAFGCG 309


>gi|224174514|emb|CAR92675.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10677]
          Length = 222

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 159/224 (70%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G +    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLRVVGESPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y + +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYADAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|309800096|ref|ZP_07694289.1| DNA topoisomerase 4 subunit B [Streptococcus infantis SK1302]
 gi|308116263|gb|EFO53746.1| DNA topoisomerase 4 subunit B [Streptococcus infantis SK1302]
          Length = 155

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 83/112 (74%), Gaps = 3/112 (2%)

Query: 1   MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59
           MS    N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD  +GLHH+++E++DNA+DE+L G
Sbjct: 1   MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59

Query: 60  YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           + D I VT+N DGS TV D+GRG+PT +H   GI   EVI T LHAG   ++
Sbjct: 60  FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGENSDK 110


>gi|323388482|gb|ADX60530.1| DNA gyrase subunit B [Geobacillus sp. NTU 03]
          Length = 264

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 130/260 (50%), Positives = 185/260 (71%)

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            + R+    Y+GGI ++V +L++ ++ L + PI I G RD I++++A+++NDGY  N+  
Sbjct: 5   VDSRKNEYVYEGGIRSYVRHLNQTREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYS 64

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI   +GGTH SG + ALTR I  Y  K    K++  ++ G+D REG T+++SIK P
Sbjct: 65  FVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKENDTNLTGEDVREGLTAIVSIKHP 124

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL +S+ R+V ++  ++    +L E+P  A+ IV+K + A+  R AA++A
Sbjct: 125 SPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKA 184

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LTRRK  L+I++LPGKLADCS RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRG
Sbjct: 185 RELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRG 244

Query: 456 KILNVERARFDKMLSSQEIG 475
           KILNVE+AR DK+LS+ E+ 
Sbjct: 245 KILNVEKARLDKILSNNEVR 264


>gi|223885877|gb|ACN22610.1| DNA gyrase subunit beta [Rhizobium oryzae]
          Length = 226

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 139/226 (61%), Positives = 179/226 (79%)

Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           HGVGVSVV ALS WLKLRI+R G I+E++F +G+ D PL V G     +GTEVTFL SS+
Sbjct: 1   HGVGVSVVIALSVWLKLRIRRNGKIHEIAFTHGVADAPLAVIGEYEGRSGTEVTFLASSE 60

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
            F++ ++++ TL+HRLREL+FLNS V+I L D+R P+ +E  M Y GG+EAFV YLDR K
Sbjct: 61  TFTMTEYDFGTLEHRLRELAFLNSGVRIRLTDRRKPDVKEEEMLYDGGLEAFVRYLDRAK 120

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           KPL+  P+ I+G RD I++++AM WND YHENVLCFTNNIPQ+DGGTH+ G RSALTRQI
Sbjct: 121 KPLVDKPVAIKGERDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMQGFRSALTRQI 180

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            SY + S   KK+K ++ GDDCREG ++VLS+K+PDP+FSSQTK+K
Sbjct: 181 VSYADSSGIMKKEKVTLTGDDCREGLSAVLSVKVPDPKFSSQTKDK 226


>gi|190148852|gb|ACE63401.1| DNA gyrase B subunit [Pseudonocardia kongjuensis]
          Length = 356

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 133/357 (37%), Positives = 194/357 (54%), Gaps = 41/357 (11%)

Query: 148 MSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206
             + +      L+  G+    DTGT +T+     IF    +  +T++ RL+E +FLN  +
Sbjct: 1   QHYDHARP-GELIEAGTTKKSDTGTTITYWADPTIFETTSYTLETIRRRLQEQTFLNKGL 59

Query: 207 QISLIDK---------------------------------------RSPEPREITMFYKG 227
            + L D+                                          +P+E    Y  
Sbjct: 60  TMVLRDERRPEKAAELLPSSDGVDEDGNPAEVVPVVDADEEPDAEGYVAKPKEYVFHYPN 119

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+E FV++L++ K P+ +  +   G      +++AM+WN GY E+V  F N I   +GGT
Sbjct: 120 GLEDFVAHLNKSKDPIHRKIVSYTGEGPGHQVEVAMQWNSGYSESVYTFANTINTHEGGT 179

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           H  G R ALT  +  Y       K+   ++ GDD REG  +++S+K+ +P+F  QTK KL
Sbjct: 180 HEEGFRHALTATVNRYARDKKLIKEKDPALSGDDIREGLAAIVSVKISEPQFEGQTKTKL 239

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            ++EV+S V+   N+ L+ W E +P EAK IV K + ++  R AARRAR+L RRK   DI
Sbjct: 240 GNTEVKSFVQRVSNEWLADWFERNPTEAKTIVNKAVSSAQARLAARRARELVRRKSAGDI 299

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
             LPGKL+DC  RDP+  EL++VEGDSAGGSAK GR   +QAILP+RGKI+NVE+AR
Sbjct: 300 GGLPGKLSDCRSRDPESCELYIVEGDSAGGSAKAGRDSMHQAILPIRGKIINVEKAR 356


>gi|11559431|dbj|BAB18782.1| type II DNA topoisomerase [Porphyra suborbiculata]
          Length = 382

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 152/405 (37%), Gaps = 34/405 (8%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           G GIPT +H +EG+   E+I   L      +    KV GG +G G  + N  S+   +  
Sbjct: 1   GAGIPTAMHAKEGVYVPELIFGHLLTSSNCDDGEKKVVGGRNGYGAKLANIFSTRFVVET 60

Query: 140 KRE--GNIYEMSFINGILDNPLVVTGSAGNDT--GTEVTFLPSSDIFSVQDFNYD---TL 192
                G  Y+ +F   ++D  + V  ++       T +TF P    F ++  + D    L
Sbjct: 61  ADASSGKTYKQTFKRNMMDRGVPVIRASAKARDAWTRITFEPDLAKFGMERLDADATAVL 120

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           Q R+ +++ +   + + L   +                           P          
Sbjct: 121 QMRVVDMAGVVPGIAVHLNGVKLKINSFKQYVDL----------HLADAPDAPRIHDGSA 170

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
            R  + +      +DG       F N+I    GGTH++ +   L  +I  ++ K     +
Sbjct: 171 DRWEVVV----SVSDGQLTQT-SFVNSIATTKGGTHVNHVADQLVGRIQEHIAKK----R 221

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               V     +   +  +   + +P F SQTKE L S       +    D ++  L +  
Sbjct: 222 KTLKVKPFQIKSQLSIYVKCLVENPAFDSQTKEMLTSRPATFGSKWVCPDRMAKDLIKSG 281

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +V+ VL  +  +     A+    ++  +              RD  K  L L EG
Sbjct: 282 -----VVENVLSLAESQQVKELAKTDGGKRARVTGIPKLDDANLAGTRDSAKCTLILTEG 336

Query: 433 DSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEI 474
           DSA   A  G S   R+   + PLRGK+LNV  A   +++ + EI
Sbjct: 337 DSAKALAISGLSVLGRDFYGVFPLRGKLLNVREATHKQIMENAEI 381


>gi|281331684|emb|CAZ40036.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 239

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 112/228 (49%), Positives = 147/228 (64%), Gaps = 3/228 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L + + + G  Y+  F NG     L          GT V F PS+
Sbjct: 1   LHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRGTTVRFWPST 59

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L +
Sbjct: 60  VAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQ 118

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR
Sbjct: 119 LKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
            + +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEK
Sbjct: 179 VLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 226


>gi|146424625|dbj|BAF62121.1| DNA gyrase B subunit [Rhodopseudomonas faecalis]
          Length = 222

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 159/224 (70%), Gaps = 2/224 (0%)

Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175
           VSGGLHGVGVSVVNALSS L LR+ R+   + + F +G    PL V G+AG   GTEVTF
Sbjct: 1   VSGGLHGVGVSVVNALSSRLLLRVWRDDKEHFIEFAHGEALAPLAVVGAAGGKRGTEVTF 60

Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
             S + F+  ++++ TL+HRLREL+FLNS V I L D R    +   M Y+GG+  FV Y
Sbjct: 61  YASPETFTNIEYDFATLEHRLRELAFLNSGVNILLSDLRHGVEKREEMRYEGGVVEFVKY 120

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           LDR+KK ++ +PI I    + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R A
Sbjct: 121 LDRNKKAIVPAPITILAEMNGITVECALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGA 180

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339
           LTRQ+  Y +    +KK+K ++ GDDCREG T+VLS+K+PDP F
Sbjct: 181 LTRQVNGYAD--VIAKKEKIALTGDDCREGLTAVLSVKVPDPSF 222


>gi|260182092|gb|ACX35580.1| gyrase beta subunit [Vibrio harveyi]
          Length = 266

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 134/268 (50%), Positives = 194/268 (72%), Gaps = 3/268 (1%)

Query: 136 KLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHR 195
            L I R G+I+  ++ +G    PL V G   + TGT++ F PS++ FS  +F+YD L  R
Sbjct: 1   VLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSNTEFHYDILAKR 59

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLNS V I L+D+R  +       ++GGI+AFV +L+ +K P+++        R+
Sbjct: 60  LRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERE 118

Query: 256 N-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314
           + IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK K
Sbjct: 119 DGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAK 178

Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374
            +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P E
Sbjct: 179 TATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAE 238

Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRK 402
           AK++  K++DA+  R+AAR+AR++TRRK
Sbjct: 239 AKMVCSKIIDAARAREAARKAREMTRRK 266


>gi|259156939|gb|ACV95899.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
 gi|259156941|gb|ACV95900.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
 gi|259156945|gb|ACV95902.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
 gi|259156949|gb|ACV95904.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
 gi|259156951|gb|ACV95905.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
 gi|259156953|gb|ACV95906.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
          Length = 271

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 139/274 (50%), Positives = 193/274 (70%), Gaps = 4/274 (1%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHR 195
           L I REG+I++ +++ G    PL V G     TGT V F PS   F +  +F YD L  R
Sbjct: 1   LTISREGSIHQQTYVMGEPQAPLKVMGKTE-LTGTRVRFWPSMKTFTNQTEFQYDILAKR 59

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLNS V I L DKR+ +       Y+GGI+AFV+YL+++K P+          +D
Sbjct: 60  LRELSFLNSGVFICLHDKRNDQE--KHFHYEGGIQAFVTYLNKNKTPIHPKVFYFSTVKD 117

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           +I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+EK   SKK K 
Sbjct: 118 DIGVEIALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAMTRTMNSYMEKEGFSKKSKI 177

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +A
Sbjct: 178 NATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPSDA 237

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           K IV K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 KTIVNKIIDAARAREAARKAREMTRRKGALDLAG 271


>gi|302122556|gb|ADK92946.1| topoisomerase IV subunit B [Geobacillus uzenensis]
          Length = 278

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 106/272 (38%), Positives = 164/272 (60%), Gaps = 7/272 (2%)

Query: 129 NALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           NALS WL + I R+G +Y   F +G      L   G   + TGT + F P   IFS   F
Sbjct: 1   NALSEWLVVTIHRDGFVYRQRFEHGGKPVTTLEKIG-TTDKTGTIIQFKPDPTIFSTTVF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +Y+TL  RLRE +FL   ++I LID+R+         Y+ GIEAFV+YL+  K  L    
Sbjct: 60  DYETLSERLRESAFLLKGLKIELIDERTG--MHDVFHYENGIEAFVAYLNEEKDVLHP-V 116

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +   G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR    Y  + 
Sbjct: 117 VYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARRV 176

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              K+  +++ G D REG ++V+S+++P+   +F  QTK KL +SE RS V++ V++ L 
Sbjct: 177 GLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEXRSAVDAVVSEQLM 236

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
            +L+E+P  + +++KK + A   R+AAR+AR+
Sbjct: 237 YFLQENPDVSAMLIKKAIRAYQAREAARKARE 268


>gi|327409604|ref|YP_004347024.1| DNA topoisomerase II [Lausannevirus]
 gi|326784778|gb|AEA06912.1| DNA topoisomerase II [Lausannevirus]
          Length = 1090

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 119/627 (18%), Positives = 221/627 (35%), Gaps = 72/627 (11%)

Query: 30  MYIGDTDGESGLHHMIYEVLDNAIDESLEGY-----ADIITVTLNMD-GSCTVSDNGRGI 83
           M  G      GL  + YE++ N ID              I VTLN + G CTV ++G  I
Sbjct: 41  MKFGSLVFPEGLERIYYEIVSNGIDNMFRSQKSGIPMKSIKVTLNRETGYCTVWNDGAHI 100

Query: 84  PTDLHK-----EEG------ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS 132
           P +  +     E G      +  AE+      A   +N    + + G +G+G  + +  S
Sbjct: 101 PVEKKEYSYTDELGNTTTSLLYPAELFFGYSKASTNYNDSEVRKTSGRNGLGAKLTSVFS 160

Query: 133 SWLKLRIKR-EGN-IYEMSF-----INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
               +R    E   I++  F             L       +   TE++FLP  + F + 
Sbjct: 161 KHFVVRCFDPEKKLIFKQEFFDNLTRRSEPV--LEK--CTKSRGWTEISFLPDFERFGLD 216

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            ++ D L  R ++     S V   ++D    +    ++     + +  +      K    
Sbjct: 217 GWS-DALVSRFQKTMRDASLVTGLIVDFNEEKFSFSSLEEYAKLFSSENPNILALKSADS 275

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           S + ++ +  ++  +     +  +   +  FT        G H++  + A+   +     
Sbjct: 276 SFVLLEKNVSDVVFESGQETSLSFVNGLEVFT--------GVHVNAWKHAVLMPLLK-AF 326

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
            +    + K           F   L   +  P F+SQTK +L S   +            
Sbjct: 327 NAKQKAEGKPKASMKQLECFFHIFLVCDLDKPEFTSQTKHELASPVPK------------ 374

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
              +    + K ++K          +    R L + K +                   + 
Sbjct: 375 -VCKLKEEQVKKLLKWSFVP--ELSSRLDPRKLKKTKKLELNLKKVDDAQLAGTERSSEC 431

Query: 426 ELFLVEGDSAGGSAKQG----RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481
            L L EGDSA   A  G    + RE      L+GK+LN   A    +  ++E+  L   L
Sbjct: 432 TLILTEGDSAKTLAVSGFTSLQDREKYGAFALKGKVLNTTNATAKAIGKNKELEMLRVVL 491

Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541
           G         +  LRY K+++M DAD DG HI  L+L FF +  P L++NGF+  ++ P+
Sbjct: 492 GL----SKDLVRTLRYGKVLLMCDADEDGKHIEALVLAFFHKFFPELLNNGFVVSLQTPI 547

Query: 542 YGIT-----------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590
                            +   +V++    ++  +            D +  +++  L  +
Sbjct: 548 LKAFPTKNKELWFYSTKQFETWVQNNPGHKNLNVKYLKGLGSSKPEDGRKYLAEQKLLKY 607

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAV 617
           + D  + +     F  +      +   
Sbjct: 608 VSDGTEKEYFELAFAKSKADDRKKWLA 634


>gi|190148828|gb|ACE63389.1| DNA gyrase B subunit [Pseudonocardia alni]
          Length = 353

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/354 (37%), Positives = 193/354 (54%), Gaps = 41/354 (11%)

Query: 150 FINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208
           +   +    LV  G+    DTGT +T+     IF    +  +T++ RL+E +FLN  + +
Sbjct: 1   YEYAVP-GELVEAGTTKKSDTGTTITYWADPKIFETTSYTLETIRRRLQEQTFLNKGLTM 59

Query: 209 SLIDK---------------------------------------RSPEPREITMFYKGGI 229
            L D+                                          +P+E    Y  G+
Sbjct: 60  VLRDERRPEKPAGVPSSDAVDSDGNPIEAPVPEIDADAEPDAEGYVAKPKEYVFHYPNGL 119

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           E FV++L++ K P+ +  +   G      +++AM+WN GY E+V  F N I   +GGTH 
Sbjct: 120 EDFVAHLNKSKDPIHRKIVSYTGEGPGHQVEVAMQWNSGYSESVYTFANTINTHEGGTHE 179

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
            G R ALT  +  Y       K+   ++ GDD REG  +++S+K+ +P+F  QTK KL +
Sbjct: 180 EGFRHALTATVNKYARDKKLIKEKDPALSGDDIREGLAAIVSVKVSEPQFEGQTKTKLGN 239

Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +EV+S V+   N+ L+ W E +P EAK IV K + ++  R AARRAR+L RRK   DI  
Sbjct: 240 TEVKSFVQRVSNEWLADWFERNPTEAKTIVTKAVSSAQARLAARRARELVRRKSAGDIGG 299

Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463
           LPGKL+DC  RDP+  EL++VEGDSAGGSAK GR   +QAILP+RGKI+NVE+A
Sbjct: 300 LPGKLSDCRSRDPESCELYIVEGDSAGGSAKAGRDSMHQAILPIRGKIINVEKA 353


>gi|161339270|gb|ABX64386.1| GyrB [Gordonia amicalis]
          Length = 346

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 139/346 (40%), Positives = 199/346 (57%), Gaps = 35/346 (10%)

Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP--------------- 216
           + F P  +IF+    FN +T+  RL+E++FLN  + I+L D+R                 
Sbjct: 1   LRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDEDAP 60

Query: 217 -------------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257
                              +P+  T  Y  G+  ++ +L+R K+ +  + I      +  
Sbjct: 61  ATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH 120

Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317
            +++AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    +
Sbjct: 121 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKL 180

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAKI
Sbjct: 181 TGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKI 240

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           I+KK  D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGG
Sbjct: 241 IIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGG 300

Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483
           SAK GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA GT
Sbjct: 301 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGT 346


>gi|158252636|gb|ABW23802.1| DNA gyrase [Pantoea eucrina]
 gi|158252638|gb|ABW23803.1| DNA gyrase [Pantoea eucrina]
 gi|158252640|gb|ABW23804.1| DNA gyrase [Pantoea eucrina]
 gi|158252650|gb|ABW23809.1| DNA gyrase [Pantoea eucrina]
 gi|158252654|gb|ABW23811.1| DNA gyrase [Pantoea eucrina]
          Length = 247

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 124/250 (49%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++++G+   PL VTG     TGT V F PS + F+   DF Y+ L  RLRELS
Sbjct: 1   DGKVHQQTYVHGVPQAPLAVTGDTE-TTGTRVRFWPSHETFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLQDKRDDKS--DHYHYEGGIRAFVEYLNRNKNPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPADAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|224496208|gb|ACN52485.1| gyrB [Brenneria rubrifaciens]
          Length = 246

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 125/249 (50%), Positives = 172/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG I+   + +G+   PL VTG   + TGT V F PS + F+   +F YD L  RLRELS
Sbjct: 1   EGKIHRQVYTHGVPQAPLAVTGDT-DKTGTLVRFWPSHETFTNVTEFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLKDKRDGKE--DHFHYEGGIRAFVEYLNKNKTPIHPNIFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|312101616|ref|XP_003149691.1| hypothetical protein LOAG_14142 [Loa loa]
 gi|307755144|gb|EFO14378.1| hypothetical protein LOAG_14142 [Loa loa]
          Length = 421

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 148/408 (36%), Gaps = 32/408 (7%)

Query: 72  GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNAL 131
            + ++ +NGRGIP ++H  EG+    +I   L     ++    K+ GG +G G  + N  
Sbjct: 25  NTISIWNNGRGIPVEIHPTEGVYVPTMIFGTLFTSSNYDDSELKIVGGRNGFGAKLCNIF 84

Query: 132 SSWLKLR--IKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSVQDF 187
           S+   +    K+ G  +   +   + D    +           T VTF P    F +   
Sbjct: 85  STEFCVETCTKQSGLRFFQCWRKNMNDVDDPIISNVDTNASDYTCVTFKPDLSKFKLSTL 144

Query: 188 NYDTLQHRLR---ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244
           + DT++  +R   +++     V + L   +             G E +V     +     
Sbjct: 145 DEDTIEVMIRRTVDIAGTLDGVHVFLNGTKIE---------VSGFEDYVKLFSTNTSENF 195

Query: 245 QSPIRIQGSRDNISIDLAM-RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
           ++         N    +A+ R NDGY+     F NNI    GG H+  + + L  ++   
Sbjct: 196 ENFTVPSYCNVNNRWQIAVARSNDGYNHT--SFVNNINTLKGGRHVDYIMNQLVSRLKQE 253

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363
           + +       ++ +     +      ++  + +P F SQ+KE L +S         + + 
Sbjct: 254 IRQRCDC---EKLISTHQVKNRLHIFVNSLIENPAFESQSKEYLTTSVKDFGSTCIIPES 310

Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423
                 +       ++  + +          A      K  L   S      D   ++  
Sbjct: 311 FYENFFKDSDIIHYLLCDISE-------QHTASLNRSIKRPLWDLSKLEDAVDAGTKNGY 363

Query: 424 KSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKM 468
              L + EGDSA   A  G +   R+   + P+RGK+ NV       +
Sbjct: 364 NCTLIVTEGDSAKALAVAGLAVIGRKQYGVFPVRGKLTNVRGMDAKMV 411


>gi|164456711|dbj|BAF97848.1| gyrase B subunit [Vibrio orientalis]
          Length = 250

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 121/252 (48%), Positives = 177/252 (70%), Gaps = 3/252 (1%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
            + L I R G+ +  ++ +G    PL V G   + TGT++ F PS + F+  +F+YD L 
Sbjct: 1   KVTLTIHRGGHTHTQTYHHGEPQAPLAVVGDT-DKTGTQIRFWPSGETFTNTEFHYDILA 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS 253
            RLRELSFLNS V I L D+R  E +     ++GGI+AFV +L+ +K P+++        
Sbjct: 60  KRLRELSFLNSGVSIMLKDER-EEDKSDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDFE 118

Query: 254 RDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
           R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K   SKK
Sbjct: 119 REDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKK 178

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P
Sbjct: 179 AKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENP 238

Query: 373 LEAKIIVKKVLD 384
            EAK++  K++D
Sbjct: 239 TEAKMVCSKIID 250


>gi|224174516|emb|CAR92676.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10691]
          Length = 222

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 121/224 (54%), Positives = 158/224 (70%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PL V G +    GTEVTFL
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLRVVGDSPGKRGTEVTFL 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S + F   ++++ TL+HRLREL+FLNS V I L D R    +   M Y GG+E FV YL
Sbjct: 61  ASVETFKNIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRSEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y + +  +KK+K ++ GDDCREG T+VLS+K+P P+FS
Sbjct: 181 TRQVNGYADAN--AKKEKIALTGDDCREGLTAVLSVKVPYPKFS 222


>gi|224174560|emb|CAR92698.1| DNA gyrase, B subunit [Bradyrhizobium sp. RLA08]
 gi|224174566|emb|CAR92701.1| DNA gyrase, B subunit [Bradyrhizobium sp. RLA11]
          Length = 222

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 123/224 (54%), Positives = 160/224 (71%), Gaps = 2/224 (0%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALSS L LRI R+   + + F +G    PLVV   A    GTEVTF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVEDAPGKRGTEVTFQ 60

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            S++ F   ++++ TL+HRLREL+FLNS V I+L D R    +   M Y GG+E FV YL
Sbjct: 61  ASTETFKNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREEMHYSGGVEEFVKYL 120

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           DR+KK ++ +PI ++   + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R AL
Sbjct: 121 DRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGAL 180

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           TRQ+  Y E +  +KK+K ++ GDDCREG T+VLS+K+PDP+FS
Sbjct: 181 TRQVNGYAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|58415300|emb|CAH04908.1| DNA gyrase subunit B [Agromyces luteolus]
          Length = 310

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 189/310 (60%), Gaps = 22/310 (7%)

Query: 196 LRELSFLNSSVQISLIDKRSPE------------------PREITMFYKGGIEAFVSYLD 237
            ++++FLN  ++I+L D R+                     R  T  Y+ G+  +V YL+
Sbjct: 1   FQQMAFLNKGLRITLTDMRAGHVEIDPEDTPTTGAITIPVQRTDTFLYERGLVDYVEYLN 60

Query: 238 RHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
           + KK        I  +      +I++++AM+W   Y E+V  + N I   +GGTH  G R
Sbjct: 61  KSKKAELVNDEIISFEAEDTERHIALEVAMQWTTAYTESVHTYANTINTHEGGTHEEGFR 120

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353
           +ALT  +  Y  +    K+   ++ GDD REG T+V+S+K+ +P+F  QTK KL ++E +
Sbjct: 121 AALTTLVNRYAREKGILKEKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAK 180

Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413
           S V+  V D L  W + +P +A+ +++K   A+  R AAR+AR+ TRRKG L+ + +PGK
Sbjct: 181 SFVQRVVGDQLGDWFDRNPNQARDVIRKAQQAATARIAARKAREATRRKGFLETSGMPGK 240

Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473
           L+DC+ +DP  SE+FLVEGDSAGGSAK GR+ E QAILPLRGKILNVE+AR D+ L + E
Sbjct: 241 LSDCTSKDPTVSEIFLVEGDSAGGSAKTGRNPETQAILPLRGKILNVEKARLDRALGNAE 300

Query: 474 IGTLITALGT 483
           I  +ITA GT
Sbjct: 301 IQAMITAFGT 310


>gi|157326781|gb|ABV44503.1| DNA gyrase subunit beta [Brevundimonas bacteroides]
          Length = 130

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/130 (63%), Positives = 93/130 (71%), Gaps = 6/130 (4%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVS VNALS WL+L I
Sbjct: 1   GRGIPVDIHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSWVNALSDWLQLVI 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGNDT------GTEVTFLPSSDIFSVQDFNYDTLQ 193
            R G  +EM F  G     L VTG A   T      GT+VTF PS   FS  DF+  TL+
Sbjct: 61  FRNGKRHEMRFERGDTVESLRVTGDAPIRTDGAKLSGTQVTFYPSVTTFSHIDFDLKTLE 120

Query: 194 HRLRELSFLN 203
           HRLREL+FLN
Sbjct: 121 HRLRELAFLN 130


>gi|158252584|gb|ABW23776.1| DNA gyrase [Pantoea dispersa]
 gi|158252586|gb|ABW23777.1| DNA gyrase [Pantoea dispersa]
 gi|158252588|gb|ABW23778.1| DNA gyrase [Pantoea dispersa]
 gi|158252616|gb|ABW23792.1| DNA gyrase [Pantoea dispersa]
          Length = 247

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 125/250 (50%), Positives = 177/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++++G+   PL VTG   + TGT V F PS D F+   DF Y+ L  RLRELS
Sbjct: 1   DGKVHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDDKN--DHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|301170788|dbj|BAJ12008.1| topoisomerase II [Samia cynthia walkeri]
          Length = 463

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 179/460 (38%), Gaps = 30/460 (6%)

Query: 124 GVSVVNALSSWLKLRI--KREGNIYEMSF-INGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
           G  + N  S+   +    K+    ++ ++  N    +   +  S  +D  T+VTF P   
Sbjct: 1   GAKLCNIFSTKFTIETASKQYKKHFKQTWGSNMGKASEPKIKDSGKDDDFTKVTFSPDLA 60

Query: 181 IFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237
            F + +   D    +  R  +++  +  V++ L  +R               + +V    
Sbjct: 61  KFKMDNLEDDIVALMSRRAYDVAASSPGVKVYLNGERLK---------INKFKDYVDLYI 111

Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297
           + K+     P+++   + N   ++A+  ++   + V  F N+I    GG H+  +  ++ 
Sbjct: 112 KGKEDENGQPLKVVYEKVNERWEVALTLSNSGFQQV-SFVNSIATTKGGKHVDTVADSIV 170

Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           + +   ++K     K    +     +      ++  + +P F SQTKE +         +
Sbjct: 171 KNVLEVLKKKN---KGGVIIKPFQVKNHMWVFINCLIVNPTFDSQTKENMTLQAKSFGSK 227

Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417
             +++     + +       +V+ V   +  +      +   +++  L          D 
Sbjct: 228 CTLSEKFITAVTKSG-----LVESVWTWAKFKAQTELVKASGKKQSKLKGIPKLEDANDA 282

Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEI 474
             ++     L L EGDSA   A  G S   R++  + PL+GK LNV  A   ++L + EI
Sbjct: 283 GTKNAHLCTLILTEGDSAKTLAVSGLSVVGRDHYGVFPLKGKPLNVRDASHKQVLENVEI 342

Query: 475 GTLITALGTGIGQDSFDINKL---RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531
             LI  +G    +    ++ L   RY K++IM D D DG+HI+ L++ F     P L+  
Sbjct: 343 NNLIKIVGLQYKKKYNSVDDLKSLRYGKVMIMADQDQDGSHIKGLIINFIHHNWPELLKL 402

Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
            FL     P+   T+             E++         
Sbjct: 403 PFLEEFITPIVKATKKDKEISFYSLPEFEEWKNETENHHT 442


>gi|224496210|gb|ACN52486.1| gyrB [Enterobacter sp. CIP 102343]
          Length = 246

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 124/249 (49%), Positives = 175/249 (70%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++ ++++G+   PL VTG     TGT V F PS + F+   +F YD L  RLRELS
Sbjct: 1   EGKVHQQTYVHGVPQAPLAVTGDTE-ATGTLVRFWPSHETFTNVIEFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLKDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|217030903|gb|ACJ74052.1| DNA gyrase [Pectobacterium cypripedii]
 gi|217030907|gb|ACJ74054.1| DNA gyrase [Pectobacterium cypripedii]
 gi|217030909|gb|ACJ74055.1| DNA gyrase [Pectobacterium cypripedii]
          Length = 247

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 122/250 (48%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++I+G+   PL V G     TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   DGKVHQQTYIHGVPQAPLAVVGDTE-ATGTRVRFWPSHETFTNVTEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDDKN--DHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|183987580|gb|ACC65780.1| topoisomerase II [Pleurotus eryngii var. eryngii]
          Length = 680

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 114/546 (20%), Positives = 216/546 (39%), Gaps = 31/546 (5%)

Query: 132 SSWLKLRI--KREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           S    +    K  G  Y  ++   +       +T ++ N+  T VTF P    F +   +
Sbjct: 1   SLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITNNSRNEEYTRVTFKPELTRFGMTHID 60

Query: 189 YDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            DT   L+ R+ +++     V++ L D+R              IEA  +    +     Q
Sbjct: 61  ADTAGLLRKRVYDMAGTVKDVKVYLNDERLKIKTFKQYVEM-YIEAATAGAKENSGGAAQ 119

Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305
           +   +   + +   ++A   +DG  + V  F N+I    GGTH++ +   L++ I +++ 
Sbjct: 120 AKPTVIYEQISPRWEVAFATSDGTFQQV-SFANSISTIKGGTHVNYIADQLSKSIIAHIA 178

Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
           K   +   K +      +      ++  + +P F SQTKE L     +      +++   
Sbjct: 179 KKNKAATVKPAQ----VKNHMWIFVNALIENPTFDSQTKETLTLPAGKFGSRPALSEEFM 234

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425
             +++       I+ +VL+ +  +   +  +    ++  L   +      +   ++  K 
Sbjct: 235 KKVQKS-----SIIDQVLNWAKFKADQQIKKTDGSKRNRLTGMAKLSDANNAGTKNAGKC 289

Query: 426 ELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
            L L EGDSA      G A  GR   N  + PLRGK+LNV  AR D+++ ++EI  +   
Sbjct: 290 TLILTEGDSAKSPAVAGLAVVGRD--NFGVFPLRGKLLNVREARHDQIMRNEEIQNIKKI 347

Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKP 539
           +G    ++   ++ LRY +++IMTD D DG+HI+ LL+ F     PSL+      +    
Sbjct: 348 MGLQHNKEYTSVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSLLKVPEFLVEFVT 407

Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599
           P   +T+G   +        E +L     S++      +          +  D      +
Sbjct: 408 PYVRVTKGNQRKNFFTIPEYETWLEETPDSKK-----WTAKYYKGLGTSSDADAREYFSQ 462

Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
           + K   P       E+A+I   F+ +   +       +            E  +   IN 
Sbjct: 463 MSKHMVPFATMEDEERALIDLAFSKKKADDR-KEWLRQFKPGTYLDHNIDEIPFTDFINK 521

Query: 660 SDILVK 665
             IL  
Sbjct: 522 ELILFS 527


>gi|258545480|ref|ZP_05705714.1| DNA topoisomerase IV, B subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258519180|gb|EEV88039.1| DNA topoisomerase IV, B subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 402

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 117/398 (29%), Positives = 181/398 (45%), Gaps = 7/398 (1%)

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +        I + L    + G +     + N IP   GGTH++GLR+ L   +  + E  
Sbjct: 1   MSHHDDEGQIDLALTWSESAGANGTYESYANLIPTTGGGTHVNGLRTGLVEALREFCEFR 60

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
               +    +  +D  EG   VLS+K+P+P+FSSQTKE+L S +  + V     D    +
Sbjct: 61  DLLPRG-VKLAPEDIWEGCQYVLSVKIPEPQFSSQTKERLTSRQCAAWVAGISKDQFGLY 119

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427
           L +H    + +    +  +              RK      +LPGKLADC  +D + +EL
Sbjct: 120 LNKHADIGEALAALAISHAQ---KRLNHNKQVTRKRATSGPALPGKLADCISQDTRLTEL 176

Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487
           FLVEGDSAGGSAKQ R R+NQAI+PLRGKI N        ++SSQEI  +  A+  GI  
Sbjct: 177 FLVEGDSAGGSAKQARDRQNQAIMPLRGKIKNTWEDDSAVVMSSQEIHDI--AVAIGIDP 234

Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547
            S D++ LRY KI I+ DAD DG HI TL+     +  P+L+  G LY+  PPLY I  G
Sbjct: 235 ASDDLSGLRYGKICILADADSDGLHIATLICALMVKHFPALVKAGHLYVAMPPLYRIDAG 294

Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607
           K ++Y  DE   +  +              ++           + +   ++   +     
Sbjct: 295 KRIEYALDEGERDTAIATIRRDGYHGKINVTRFKGLGEMNPPQLRE-TTMNPDTRRLVQL 353

Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
                ++   +  +   +       +      +  + +
Sbjct: 354 TYHDAMQADALLDMLLADKRAADRRAWIETNGDHADNL 391



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
            + TI   G  G I++ R+KGLGEMN  QL ETT+NPDTR L+++   DA QAD L   L
Sbjct: 309 AIATIRRDGYHGKINVTRFKGLGEMNPPQLRETTMNPDTRRLVQLTYHDAMQADALLDML 368

Query: 781 MGDE-VEPRREFIQENSLPS-ALD 802
           + D+    RR +I+ N   +  LD
Sbjct: 369 LADKRAADRRAWIETNGDHADNLD 392


>gi|110629862|gb|ABG80447.1| gyrase subunit B [Hydrogenothermus marinus]
          Length = 295

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 152/304 (50%), Gaps = 15/304 (4%)

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG------QDSFDINKLRYHKII 501
           QAILPL+GKILNVE+AR DK+LS++EI ++I A+GTGIG      ++ FD++KLRYHKII
Sbjct: 1   QAILPLKGKILNVEKARIDKILSNEEIRSIINAIGTGIGLQTEEGEEGFDLSKLRYHKII 60

Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561
           +M DADVDG+HI TLLLT F+R  P +I NGFLYI +PPLY + +GK + Y+KD++ LE 
Sbjct: 61  LMADADVDGSHITTLLLTLFYRYFPQIIENGFLYIAQPPLYRLKKGKQVFYLKDDKELEH 120

Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621
            L+    +  +             +L   + +  + ++  +       +  +   +   +
Sbjct: 121 VLMEHIKNHGVLKDAKGAE-YRGEELVKLLKNLKEFEENYRYLVRRKGEDVLSSLLSVML 179

Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681
              +     N  L  +  N L  I    +        +    +  +      + +L+   
Sbjct: 180 TEEDMR---NQELLKEKVNLLKKILTDYKIETKYDELSGAYEIILMDERTGRRILLDVEF 236

Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741
           + S   K     S            +        + G   +L+T   + ++G  +QRYKG
Sbjct: 237 LSSLAYK-----SVLSGFKLDLPAVVSVEKKSETVYGLHQILNTFMELAKEGFELQRYKG 291

Query: 742 LGEM 745
           LGEM
Sbjct: 292 LGEM 295


>gi|217030905|gb|ACJ74053.1| DNA gyrase [Pectobacterium cypripedii]
          Length = 247

 Score =  194 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 122/250 (48%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++I+G+   PL V G     TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   DGKVHQQTYIHGVPQAPLAVVGDTE-ATGTRVRFWPSHETFTNVTEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDDKN--DHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQXMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|259156955|gb|ACV95907.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
          Length = 270

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 138/273 (50%), Positives = 192/273 (70%), Gaps = 4/273 (1%)

Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRL 196
            I REG+I++ +++ G    PL V G     TGT V F PS   F +  +F YD L  RL
Sbjct: 1   TISREGSIHQQTYVMGEPQAPLKVMGKTE-LTGTRVRFWPSMKTFTNQTEFQYDILAKRL 59

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L DKR+ +       Y+GGI+AFV+YL+++K P+          +D+
Sbjct: 60  RELSFLNSGVFICLHDKRNDQE--KHFHYEGGIQAFVTYLNKNKTPIHPKVFYFSTVKDD 117

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+EK   SKK K +
Sbjct: 118 IGVEIALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAMTRTMNSYMEKEGFSKKSKIN 177

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AK
Sbjct: 178 ATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPSDAK 237

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
            IV K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 TIVNKIIDAARAREAARKAREMTRRKGALDLAG 270


>gi|157326783|gb|ABV44504.1| DNA gyrase subunit beta [Brevundimonas diminuta]
          Length = 130

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/130 (63%), Positives = 95/130 (73%), Gaps = 6/130 (4%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIPT +H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVS VNALS WL+L+I
Sbjct: 1   GRGIPTGIHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSWVNALSDWLELKI 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGND------TGTEVTFLPSSDIFSVQDFNYDTLQ 193
            R+G  +EM F  G     L VTG A         +GTEVTF PS   FS  DF+  TL+
Sbjct: 61  YRDGKAHEMRFERGDTVKSLEVTGDAPIREDGKPLSGTEVTFFPSVTTFSHIDFDLKTLE 120

Query: 194 HRLRELSFLN 203
           HRLREL+FLN
Sbjct: 121 HRLRELAFLN 130


>gi|302122554|gb|ADK92945.1| topoisomerase IV subunit B [Geobacillus uzenensis]
          Length = 279

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 105/272 (38%), Positives = 163/272 (59%), Gaps = 7/272 (2%)

Query: 129 NALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187
           NALS WL + I R+G +Y   F +G      L   G   + TGT + F P   IFS   F
Sbjct: 2   NALSEWLVVTIHRDGFVYRQRFEHGGKPVTTLEKIG-TTDKTGTIIQFKPDPTIFSTTVF 60

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +Y+TL  RLRE +FL   ++I LID+R+         Y+ GIEAFV+YL+  K  L    
Sbjct: 61  DYETLSERLRESAFLLKGLKIELIDERTG--MHDVFHYENGIEAFVAYLNEEKDVLHP-V 117

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           +   G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR    Y  + 
Sbjct: 118 VYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARRV 177

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGLS 365
              K+  +++ G D REG ++V+S+++P+   +F  QTK KL +SE RS V++ V++ L 
Sbjct: 178 GLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEQLM 237

Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
            +L+E+P  + +++KK + A   R+ AR+AR+
Sbjct: 238 YFLQENPDVSAMLIKKAIRAYQAREXARKARE 269


>gi|146189360|emb|CAL91148.1| DNA gyrase subunit beta [Mesorhizobium mediterraneum]
          Length = 233

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 139/233 (59%), Positives = 175/233 (75%), Gaps = 9/233 (3%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-------- 168
           SGGLHGVGVSVVNALS+WLKL+I+R G IYEMSF +G  D PL VTGS            
Sbjct: 1   SGGLHGVGVSVVNALSAWLKLKIRRNGQIYEMSFTHGNADAPLRVTGSYEQRKVAGTYEG 60

Query: 169 -TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227
            +G+E+TF PSS+ F++ +F++ TL+HRLREL+FLNS V+I L D R  +     + Y G
Sbjct: 61  RSGSEITFFPSSETFTMVEFDFGTLEHRLRELAFLNSGVRIVLTDARHADVVRHELHYDG 120

Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287
           G+E FV YLDR KKPL+  PI I+  RD I++++AM WND YHENVL FTNNIPQ+DGGT
Sbjct: 121 GLEEFVKYLDRVKKPLIDKPIAIKAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGGT 180

Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340
           HL+G R ALTRQIT Y + S  +KK+K ++IGDDCREG T+VLS+K+PDP+FS
Sbjct: 181 HLAGFRGALTRQITGYGDSSGLTKKEKVALIGDDCREGLTAVLSVKVPDPKFS 233


>gi|259156943|gb|ACV95901.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
          Length = 271

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 139/274 (50%), Positives = 193/274 (70%), Gaps = 4/274 (1%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHR 195
           L I REG+I++ +++ G    PL V G     TGT V F PS   F +  +F YD L  R
Sbjct: 1   LTISREGSIHQQTYVMGEPXAPLKVMGKTE-LTGTRVRFWPSMKTFTNQTEFQYDILAKR 59

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLNS V I L DKR+ +       Y+GGI+AFV+YL+++K P+          +D
Sbjct: 60  LRELSFLNSGVFICLHDKRNDQE--KHFHYEGGIQAFVTYLNKNKTPIHPKVFYFSTVKD 117

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           +I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+EK   SKK K 
Sbjct: 118 DIGVEIALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAMTRTMNSYMEKEGFSKKSKI 177

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +A
Sbjct: 178 NATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPSDA 237

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           K IV K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 KTIVNKIIDAARAREAARKAREMTRRKGALDLAG 271


>gi|224496196|gb|ACN52479.1| gyrB [Pantoea dispersa]
          Length = 246

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 125/249 (50%), Positives = 176/249 (70%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++++G+   PL VTG   + TGT V F PS D F+   DF Y+ L  RLRELS
Sbjct: 1   DGKVHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDDKN--DHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|164456615|dbj|BAF97800.1| gyrase B subunit [Photobacterium damselae subsp. damselae]
          Length = 234

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 118/236 (50%), Positives = 163/236 (69%), Gaps = 3/236 (1%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  ++L I R G+I+   + +G+   PL V G   + TGT + F PSS+ F+   F Y+ 
Sbjct: 1   SEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTTIRFWPSSETFTNTTFQYEI 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  RLRELSFLNS V I L D+R  E ++    Y+GGI+AFV +L+R+K P+ Q      
Sbjct: 60  LAKRLRELSFLNSGVSIKLNDER-EEGKQDHFMYEGGIQAFVEHLNRNKTPIHQKVFHFN 118

Query: 252 GSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
             R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK   S
Sbjct: 119 VEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGYS 178

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
           KK K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L  
Sbjct: 179 KKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLGE 234


>gi|158252632|gb|ABW23800.1| DNA gyrase [Pantoea septica]
          Length = 247

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 124/250 (49%), Positives = 176/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++ ++++G+   PL VTG   + TGT V F PS + F+   +F YD L  RLRELS
Sbjct: 1   EGKVHQQTYVHGVPQAPLNVTGET-DLTGTRVRFWPSHETFTNVVEFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKN--DHFHYDGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|224496348|gb|ACN52555.1| gyrB [Brenneria nigrifluens]
          Length = 247

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 122/249 (48%), Positives = 176/249 (70%), Gaps = 3/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELS 200
           EG ++E ++ +G    PL V G + + TGT V F PS + F +  +F Y+ L  RLRELS
Sbjct: 1   EGKVHEQTYRHGEAQAPLKVVGDS-DKTGTTVRFWPSYETFTNQTEFQYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L D+R  + +     Y+GGI+AFV YL+R+K P+  +       +D+I ++
Sbjct: 60  FLNSGVSIRLYDER-EKDKSDHFHYEGGIKAFVDYLNRNKTPIHPTVFYFSTVKDDIGVE 118

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 119 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMDKEGYSKKAKISATGD 178

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L  +L E+P +AKI+V 
Sbjct: 179 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLVDYLMENPSDAKIVVG 238

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 239 KIIDAARAR 247


>gi|218662277|ref|ZP_03518207.1| DNA topoisomerase IV subunit B [Rhizobium etli IE4771]
          Length = 200

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 77/106 (72%), Gaps = 2/106 (1%)

Query: 6   QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65
            +  Y A SI++L+GL+ V+ RP MYIG TD E  LHH+  EV+DNA+DE++ G+A+ I 
Sbjct: 96  NSDEYGASSIRVLEGLEPVRMRPGMYIGGTD-EKALHHLFAEVIDNAMDEAVAGHANFIE 154

Query: 66  VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFN 110
           V L++ G  TV+DNGRGIP + H +  G S  EVIMT+LHAGGKF+
Sbjct: 155 VHLDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFD 200


>gi|158252474|gb|ABW23721.1| DNA gyrase [Pantoea eucalypti]
 gi|158252476|gb|ABW23722.1| DNA gyrase [Pantoea eucalypti]
 gi|158252500|gb|ABW23734.1| DNA gyrase [Pantoea eucalypti]
 gi|158252502|gb|ABW23735.1| DNA gyrase [Pantoea eucalypti]
 gi|158252504|gb|ABW23736.1| DNA gyrase [Pantoea eucalypti]
          Length = 247

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQVYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKN--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|224496190|gb|ACN52476.1| gyrB [Pantoea dispersa]
          Length = 246

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 125/249 (50%), Positives = 175/249 (70%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ +++ G+   PL VTG   + TGT V F PS D F+   DF Y+ L  RLRELS
Sbjct: 1   DGKVHQQTYVQGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDDKN--DHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|158252544|gb|ABW23756.1| DNA gyrase [Pantoea terrea]
 gi|158252568|gb|ABW23768.1| DNA gyrase [Pantoea terrea]
          Length = 247

 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 121/250 (48%), Positives = 172/250 (68%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++  + +G+   PL V G     TGT V F  S   F+   DF YD L  RLRELS
Sbjct: 1   DGKVHQQIYQHGVPTAPLTVIGETE-VTGTAVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I LIDKR+ +       Y+GGI AFV YL+++K P+  +       +D + ++
Sbjct: 60  FLNSGVSIRLIDKRTDKS--DHYHYEGGIRAFVEYLNKNKTPIHPNVFYFSTEKDGVGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WND + EN+ CFTNNIPQ+DGGTHL+G R+++TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDSFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|164456705|dbj|BAF97845.1| gyrase B subunit [Vibrio nereis]
          Length = 260

 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 124/253 (49%), Positives = 180/253 (71%), Gaps = 3/253 (1%)

Query: 133 SWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL 192
             + L I+R G+I+  ++ +G  + PL V G    +TGT++ F PS++ FS  +F+YD L
Sbjct: 1   EKVTLTIQRGGHIHTQTYRHGEPEAPLAVVGDTE-NTGTQIRFWPSAETFSNTEFHYDIL 59

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
             RLRELSFLNS V I LID+R  +       ++GGI+AFV +L+ +K P++        
Sbjct: 60  AKRLRELSFLNSGVSIKLIDEREDDKS-DHFMFEGGIQAFVDHLNTNKTPIIDKIFHFNF 118

Query: 253 SRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
            R++ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SK
Sbjct: 119 EREDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSK 178

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+
Sbjct: 179 KAKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVEN 238

Query: 372 PLEAKIIVKKVLD 384
           P EAK++  K++D
Sbjct: 239 PTEAKMVCSKIID 251


>gi|158252642|gb|ABW23805.1| DNA gyrase [Pantoea brenneri]
 gi|158252644|gb|ABW23806.1| DNA gyrase [Pantoea brenneri]
 gi|158252648|gb|ABW23808.1| DNA gyrase [Pantoea brenneri]
          Length = 247

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQVYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|158252596|gb|ABW23782.1| DNA gyrase [Pantoea agglomerans]
          Length = 247

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 124/250 (49%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLDDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y+EK   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIMDAARARE 247


>gi|158252558|gb|ABW23763.1| DNA gyrase [Pantoea terrea]
          Length = 247

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 122/250 (48%), Positives = 172/250 (68%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++  + +G+   PL V G     TGT V F  S   F+   DF YD L  RLRELS
Sbjct: 1   DGKVHQQIYQHGVPTAPLTVIGETE-VTGTAVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I LIDKR+ +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLIDKRTDKS--DHYHYEGGIRAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WND + EN+ CFTNNIPQ+DGGTHL+G R+++TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDSFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|224496346|gb|ACN52554.1| gyrB [bacterium LMG 5339]
          Length = 246

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 128/249 (51%), Positives = 177/249 (71%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++ ++++G+   PL  TG   + TGTEV F PS   F+   +F YD L  RLRELS
Sbjct: 1   EGKVHQQTYVHGVPQAPLAATGDT-DATGTEVRFWPSHQTFTNVIEFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I LIDKR  + R+    Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLIDKR--DGRQDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y+EK   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ LS +L EHP +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLSEYLLEHPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|283467018|emb|CBI61644.1| DNA gyrase subunit B [Acinetobacter sp. G30]
          Length = 279

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 144/282 (51%), Positives = 188/282 (66%), Gaps = 3/282 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSS L+L I R G I++  + +G    PL V       TGT V F PS++ FS   
Sbjct: 1   VVNALSSKLELTIHRAGQIHQQEYCHGDSVYPLKVV-GTTETTGTTVRFWPSAETFSQTI 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y+++ K  L + 
Sbjct: 60  FNVDILARRLRELSFLNAGVRIVLRDERVA--LEHIYDYEGGLSEFVKYMNQGKTHLNEI 117

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 S   I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR +  Y+E 
Sbjct: 118 FHFTADSDQGIMVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLNQYLES 177

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +N   S 
Sbjct: 178 ENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQAMNKAFSE 237

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408
           +L E+P  AK I  K++DA+  RDAAR+AR++TRRK  LDIA
Sbjct: 238 YLLENPTAAKSIAGKIIDAARARDAARKAREMTRRKSALDIA 279


>gi|224496212|gb|ACN52487.1| gyrB [Enterobacter sp. ATCC 27981]
 gi|224496214|gb|ACN52488.1| gyrB [Enterobacter sp. ATCC 27990]
          Length = 246

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/249 (48%), Positives = 171/249 (68%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +  ++   + +G+   PL VTG     TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   DNKVHRQIYEHGVPQAPLAVTGDTE-KTGTMVRFWPSYETFTNVTEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLKDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|328813923|gb|AEB52077.1| GyrB [Enterobacter kobei]
          Length = 273

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 145/276 (52%), Positives = 202/276 (73%), Gaps = 4/276 (1%)

Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNS 204
           ++ ++++G+   PL VTG   + TGT+V F PS + F+   +F YD L  RLRELSFLNS
Sbjct: 1   HQQTYVHGVPQAPLAVTGET-DATGTQVRFWPSHETFTNVTEFEYDILAKRLRELSFLNS 59

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            V I LIDKR  +       Y+GGI+AFV YL+++K P+  +       +D I +++A++
Sbjct: 60  GVSIRLIDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVEVALQ 117

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + +Y++K   SKK K S  GDD RE
Sbjct: 118 WNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDARE 177

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V K++D
Sbjct: 178 GLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPTDAKIVVGKIID 237

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
           A+  R+AARRAR++TRRKG LD+A LPGKLADC ER
Sbjct: 238 AARAREAARRAREMTRRKGALDLAGLPGKLADCQER 273


>gi|223674748|gb|ACN13070.1| DNA gyrase subunit B [Pseudomonas sp. 2149]
          Length = 207

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 103/210 (49%), Positives = 141/210 (67%), Gaps = 3/210 (1%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173
           YKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G +   TGT++
Sbjct: 1   YKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQI 59

Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
            F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV
Sbjct: 60  HFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+ +K  + Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G R
Sbjct: 118 EYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFR 177

Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           SALTR + +Y+E    +KK K +  GDD R
Sbjct: 178 SALTRNLNTYIEAEGLAKKHKVATTGDDAR 207


>gi|158252498|gb|ABW23733.1| DNA gyrase [Pantoea agglomerans pv. betae]
 gi|158252546|gb|ABW23757.1| DNA gyrase [Pantoea agglomerans]
 gi|158252570|gb|ABW23769.1| DNA gyrase [Pantoea agglomerans pv. gypsophilae]
 gi|158252572|gb|ABW23770.1| DNA gyrase [Pantoea agglomerans]
 gi|158252578|gb|ABW23773.1| DNA gyrase [Pantoea agglomerans]
 gi|158252580|gb|ABW23774.1| DNA gyrase [Pantoea agglomerans]
 gi|158252582|gb|ABW23775.1| DNA gyrase [Pantoea agglomerans]
 gi|158252620|gb|ABW23794.1| DNA gyrase [Pantoea agglomerans]
          Length = 247

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/250 (49%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLDDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y+EK   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|158252646|gb|ABW23807.1| DNA gyrase [Pantoea conspicua]
          Length = 247

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|295147504|gb|ADF80583.1| DNA topoisomerase IV subunit B [Geobacillus sp. 46]
          Length = 296

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/300 (37%), Positives = 178/300 (59%), Gaps = 9/300 (3%)

Query: 130 ALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           ALS WL + I R+G +Y   F +G      L   G   + TGT + F P   IFS   FN
Sbjct: 1   ALSEWLVVTIHRDGFMYRQRFEHGGRPVTTLEKIG-TTDKTGTIIHFKPDPTIFSTTVFN 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           Y+TL  RLRE +FL   ++I L+D+R+    +    Y+ GIEAFV+YL+  K  L    +
Sbjct: 60  YETLSERLRESAFLLKGLKIELVDERTG--MQEVFHYENGIEAFVAYLNEEKDVLHP-VV 116

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
              G ++ I ++ A +++DGY ENVL F NN+  KDGGTH +G ++A+TR    Y  +  
Sbjct: 117 YFSGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARRVG 176

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
             K+  +++ G D REG ++++S+++P+   +F  QTK KL +SE RS V++ V++ L+ 
Sbjct: 177 LLKEKDKNLEGTDIREGLSAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEQLTY 236

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKK 424
           +L+E+P  + +++KK + A   R+AAR+AR+   + +K     A L GKL     R+P+K
Sbjct: 237 FLQENPDVSTMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLTPAQGRNPQK 296


>gi|269118648|ref|YP_003306825.1| DNA topoisomerase (ATP-hydrolyzing) [Sebaldella termitidis ATCC
           33386]
 gi|268612526|gb|ACZ06894.1| DNA topoisomerase (ATP-hydrolyzing) [Sebaldella termitidis ATCC
           33386]
          Length = 226

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 17/231 (7%)

Query: 11  DADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNM 70
           DA SI +L  ++ ++K+P M+IG    E GL ++++E++DN ++E+LEG+ + I V L  
Sbjct: 6   DAKSIAVLGIMEGIRKKPEMFIGSVSAE-GLCNLVWEIIDNCVNEALEGFCNTIKVRLLK 64

Query: 71  DGSCTVSDNGRGIPTDLHKEEGISAAEVIMT------RLHAGGKFNQKSYKVSGGLHGVG 124
           +    VSDNGRG+P D +++ G S  EVI+T       L  GG +     K  GGL    
Sbjct: 65  NNIIEVSDNGRGLPVDFYEKAGKSKLEVILTGKYIRGEL-TGGIYKLSRKKYKGGL---- 119

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSDIFS 183
           VS VN LS  L+  + ++G ++   +  G+    +  TG  +    GT + F    +IF 
Sbjct: 120 VS-VNGLSETLEAVVIKDGKVWYQKYHKGVPSGDIKKTGEKSEYIHGTVIRFRADREIFG 178

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234
             +++Y+ L  +L+E+        I   ++     +  + ++ G I  F+ 
Sbjct: 179 ELEYDYEILLAKLKEI---RGIKVILCDERNEAAGKTESFYFNGEIREFLK 226


>gi|224496224|gb|ACN52493.1| gyrB [Enterobacter sp. ATCC 27988]
          Length = 246

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/249 (47%), Positives = 171/249 (68%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +  ++   + +G+   PL VTG     TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   DNKVHRQIYEHGVPQAPLAVTGETE-STGTMVRFWPSYETFTNVTEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|162708502|gb|ABY19653.1| DNA gyrase B [Pseudomonas syringae pv. tomato]
 gi|162708504|gb|ABY19654.1| DNA gyrase B [Pseudomonas syringae pv. maculicola str. M6]
 gi|162708506|gb|ABY19655.1| DNA gyrase B [Pseudomonas syringae pv. maculicola]
 gi|162708508|gb|ABY19656.1| DNA gyrase B [Pseudomonas syringae pv. maculicola str. M3]
 gi|162708510|gb|ABY19657.1| DNA gyrase B [Pseudomonas syringae pv. maculicola str. F1]
 gi|162708512|gb|ABY19658.1| DNA gyrase B [Pseudomonas syringae pv. tomato]
 gi|162708514|gb|ABY19659.1| DNA gyrase B [Pseudomonas syringae pv. antirrhini str. 126]
 gi|162708516|gb|ABY19660.1| DNA gyrase B [Pseudomonas syringae pv. apii]
 gi|162708518|gb|ABY19661.1| DNA gyrase B [Pseudomonas syringae pv. tomato]
          Length = 233

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 151/232 (65%), Positives = 195/232 (84%)

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+E+   +KK K +
Sbjct: 1   IGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVA 60

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK
Sbjct: 61  TTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAK 120

Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
            +V K++DA+  R+AAR+AR++TRRKG LDIA LPGKLADC E+DP  SEL+LVEGDSAG
Sbjct: 121 AVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAG 180

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488
           GSAKQGR+R  QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG++
Sbjct: 181 GSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRE 232


>gi|224496316|gb|ACN52539.1| gyrB [Pantoea brenneri]
 gi|224496318|gb|ACN52540.1| gyrB [Pantoea sp. LMG 29001]
          Length = 246

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQVYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|323652536|gb|ADX98519.1| gyrase B [Burkholderia stabilis]
          Length = 196

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/199 (44%), Positives = 120/199 (60%), Gaps = 19/199 (9%)

Query: 83  IPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLR 138
           IPTD+      E   SAAE++MT LHAGGKF+Q SYKVSGGLHGVGVS VNALSSWL+L 
Sbjct: 1   IPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLT 60

Query: 139 IKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           ++R G    M F  GI              +P++VTG    + GTEV F+    IF   +
Sbjct: 61  VRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTE-NRGTEVHFMADPTIFGTVE 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           ++YD L  R+RELSFLN+ V+I L D RS +       + GG++ FV Y+++ K  L  +
Sbjct: 120 YHYDILAKRMRELSFLNNGVRIRLTDLRSGKE--DDFAFAGGVKGFVEYINKTKTNLHPT 177

Query: 247 PIRIQGSRDNISIDLAMRW 265
                G +D + +++AM+W
Sbjct: 178 IFFATGEKDGVGVEVAMQW 196


>gi|158252628|gb|ABW23798.1| DNA gyrase [Tatumella ptyseos]
          Length = 247

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/250 (48%), Positives = 172/250 (68%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++  + +G+   PL V G   + +GT V F  S   F+   DF YD L  RLRELS
Sbjct: 1   DGKVHQQIYQHGVPTAPLAVIGET-DVSGTAVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I LIDKR+ +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLIDKRTDKS--DHYHYEGGIRAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WND + EN+ CFTNNIPQ+DGGTHL+G R+++TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDSFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K +DA+  R+
Sbjct: 238 KXIDAARARE 247


>gi|158252634|gb|ABW23801.1| DNA gyrase [Pantoea septica]
 gi|158252652|gb|ABW23810.1| DNA gyrase [Pantoea septica]
          Length = 247

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/250 (49%), Positives = 178/250 (71%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++ ++++G+ + PL VTG   + TGT V F PS + F+   +F YD L  RLRELS
Sbjct: 1   EGKVHQQTYVHGVPEAPLNVTGET-DLTGTRVRFWPSHETFTNVVEFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKS--DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|313640123|gb|EFS04742.1| DNA gyrase, B subunit [Listeria seeligeri FSL S4-171]
          Length = 107

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/108 (47%), Positives = 72/108 (66%), Gaps = 7/108 (6%)

Query: 1   MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54
           MS+    +       Y+ D IQ+L+GL+AV+KRP MYIG T  + GLHH+++E++DNAID
Sbjct: 1   MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59

Query: 55  ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102
           E+L G+   I +T+  D S TV DNGRGIPT ++++ G    EVI T 
Sbjct: 60  EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTV 107


>gi|158252630|gb|ABW23799.1| DNA gyrase [Pantoea septica]
          Length = 247

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/250 (49%), Positives = 178/250 (71%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++ ++++G+ + PL VTG   + TGT V F PS + F+   +F YD L  RLRELS
Sbjct: 1   EGKVHQQTYVHGVPEAPLNVTGET-DLTGTRVRFWPSHETFTNVVEFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKA--DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|169667005|gb|ACA64033.1| GyrB [Pantoea terrea]
 gi|169667007|gb|ACA64034.1| GyrB [Pantoea terrea]
          Length = 247

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/250 (48%), Positives = 173/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++  + +G+   PL V G   + +GT V F  S   F+   DF YD L  RLRELS
Sbjct: 1   DGKVHQQIYQHGVPTAPLAVIGET-DVSGTAVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I LIDKR+ +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLIDKRTDKS--DHYHYEGGIRAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WND + EN+ CFTNNIPQ+DGGTHL+G R+++TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDSFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|301063849|ref|ZP_07204333.1| DNA gyrase, B subunit, C-terminal domain protein [delta
           proteobacterium NaphS2]
 gi|300442052|gb|EFK06333.1| DNA gyrase, B subunit, C-terminal domain protein [delta
           proteobacterium NaphS2]
          Length = 105

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771
           +K KI  P + L+ +   G++G+++QRYKGLGEMN  QLW TT++P+ R LL+VK+ DA 
Sbjct: 13  EKEKIEDPRAFLNELMDKGKRGLTIQRYKGLGEMNPDQLWTTTMDPEKRVLLQVKVEDAV 72

Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803
           +AD++F+ LMGD+VEPRREFIQ N++    LDI
Sbjct: 73  EADNIFTILMGDKVEPRREFIQNNAMEVTELDI 105


>gi|224496192|gb|ACN52477.1| gyrB [Pantoea dispersa]
          Length = 246

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/249 (50%), Positives = 176/249 (70%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++++G+   PL VTG   + TGT V F PS D F+   DF Y+ L  RLRELS
Sbjct: 1   DGKVHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDDKN--DHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAAHAR 246


>gi|34786040|gb|AAH57873.1| Top2a protein [Mus musculus]
          Length = 345

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 119/310 (38%), Gaps = 38/310 (12%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 33  YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAA 92

Query: 54  DESLEGY-ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I VT++ +    ++ +NG+GIP   HK E I    +I  +L     ++ 
Sbjct: 93  DNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEHKVEKIYVPALIFGQLLTSSNYDD 152

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIK-RE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++++ +     +       + 
Sbjct: 153 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGDMELKPFSGED 212

Query: 170 GTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226
            T +TF P    F +Q  + D    +  R  +++     V++ L                
Sbjct: 213 YTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNS---------LPV 263

Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286
            G  ++V    + K     + +++   + N   ++ +  ++   + +  F N+I    GG
Sbjct: 264 KGFRSYVDLYLKDKVDETGNSLKVIHEQVNPRWEVCLTMSERGFQQI-SFVNSIATSKGG 322

Query: 287 THLSGLRSAL 296
            H+  +   +
Sbjct: 323 RHVDYVADQI 332


>gi|224496314|gb|ACN52538.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/249 (49%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS D F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQVYVHGVPQAPLAVTGET-DITGTRVRFWPSHDTFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKN--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|224496310|gb|ACN52536.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 172/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQVYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI  FV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLDDKRDGKS--DHFHYEGGIRGFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y+EK   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|227553419|ref|ZP_03983468.1| possible DNA topoisomerase IV subunit B [Enterococcus faecalis
           HH22]
 gi|227177448|gb|EEI58420.1| possible DNA topoisomerase IV subunit B [Enterococcus faecalis
           HH22]
          Length = 378

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/353 (34%), Positives = 188/353 (53%), Gaps = 11/353 (3%)

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
           K+  +++ G D REG  +VLSI++P+   +F  QTK KL +   R+VV++ V + +  +L
Sbjct: 1   KEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYL 60

Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSE 426
           +E+   ++ +++K + A   R+AAR+AR+     +K     + L GKL     R+PKK+E
Sbjct: 61  QENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNE 120

Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           L+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+   +L ++EI T+I  +G G+G
Sbjct: 121 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG 180

Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546
              F I    Y KIIIMTDAD DGAHI+ LLLTFF+R M  LI  G +YI  PPLY +++
Sbjct: 181 -PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSK 239

Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606
           G   + V       +Y        E+        ++ +      ++     +  +     
Sbjct: 240 GTGKKSVI------EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETR 293

Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
              +  I+ A  +         +        +   + F  E+       S  +
Sbjct: 294 TLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 346



 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603
           I +    +  ++               +      S  +          ++   ++     
Sbjct: 71  IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 130

Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
                 +    QA++     V N E  +  ++    ++   +  I       +     N 
Sbjct: 131 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 190

Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717
           D ++           +      F +      I + ++      +  +     K  +    
Sbjct: 191 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 250

Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777
                L  +     KG  +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+   
Sbjct: 251 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 310

Query: 778 SRLMGDEVEPRREFIQEN 795
           + LMGD+VEPRR++I+++
Sbjct: 311 TTLMGDKVEPRRKWIEQH 328


>gi|312618521|gb|ADR00378.1| DNA gyrase [Gibbsiella quercinecans]
 gi|312618537|gb|ADR00386.1| DNA gyrase [Gibbsiella quercinecans]
 gi|312618553|gb|ADR00394.1| DNA gyrase [Gibbsiella quercinecans]
 gi|312618557|gb|ADR00396.1| DNA gyrase [Gibbsiella quercinecans]
          Length = 247

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 120/250 (48%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELS 200
           EG ++E ++ +G     L V G   + TGT V F PS   F +  +F Y+ L  RLRELS
Sbjct: 1   EGKVHEQTYSHGEPQGALKVVGET-DQTGTMVRFWPSYQTFTNQTEFQYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR+ +       Y+GGI+AFV YL+++K P+  +       +D+I ++
Sbjct: 60  FLNSGVSIRLKDKRTDKE--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTVKDDIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|84180490|gb|ABC54691.1| gyrase B [Pseudomonas sp. JF-10]
          Length = 192

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 99/195 (50%), Positives = 133/195 (68%), Gaps = 4/195 (2%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+REG I+   + +G+   PL VTG     TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVR 59

Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AFV
Sbjct: 60  FWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293
            YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R
Sbjct: 118 EYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 177

Query: 294 SALTRQITSYVEKSF 308
           +A+TR + +Y++K  
Sbjct: 178 AAMTRTLNAYMDKEG 192


>gi|224496218|gb|ACN52490.1| gyrB [Enterobacter sp. ATCC 27982]
 gi|224496220|gb|ACN52491.1| gyrB [Enterobacter sp. ATCC 27989]
          Length = 246

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/249 (47%), Positives = 170/249 (68%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +  ++   + +G+   PL VTG     TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   DNKVHRQIYEHGVPQAPLAVTGDTE-KTGTMVRFWPSYETFTNVTEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLKDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L  +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLGEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|224496260|gb|ACN52511.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 172/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLDDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y+EK   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
            ++DA+  R
Sbjct: 238 TIIDAARAR 246


>gi|224496252|gb|ACN52507.1| gyrB [Pantoea agglomerans]
 gi|224496254|gb|ACN52508.1| gyrB [Pantoea agglomerans]
 gi|224496256|gb|ACN52509.1| gyrB [Pantoea agglomerans]
 gi|224496258|gb|ACN52510.1| gyrB [Pantoea agglomerans]
 gi|224496262|gb|ACN52512.1| gyrB [Pantoea agglomerans]
 gi|224496264|gb|ACN52513.1| gyrB [Pantoea agglomerans]
 gi|224496266|gb|ACN52514.1| gyrB [Pantoea agglomerans]
 gi|224496268|gb|ACN52515.1| gyrB [Pantoea agglomerans pv. gypsophilae]
 gi|224496270|gb|ACN52516.1| gyrB [Pantoea agglomerans]
 gi|224496272|gb|ACN52517.1| gyrB [Pantoea agglomerans]
 gi|224496274|gb|ACN52518.1| gyrB [Pantoea agglomerans]
 gi|224496278|gb|ACN52520.1| gyrB [Pantoea agglomerans]
 gi|224496280|gb|ACN52521.1| gyrB [Pantoea agglomerans]
 gi|224496282|gb|ACN52522.1| gyrB [Pantoea agglomerans]
 gi|224496284|gb|ACN52523.1| gyrB [Pantoea agglomerans]
 gi|224496286|gb|ACN52524.1| gyrB [Pantoea agglomerans]
 gi|224496288|gb|ACN52525.1| gyrB [Pantoea agglomerans]
 gi|224496290|gb|ACN52526.1| gyrB [Pantoea agglomerans]
 gi|224496292|gb|ACN52527.1| gyrB [Pantoea agglomerans]
 gi|224496294|gb|ACN52528.1| gyrB [Pantoea agglomerans]
 gi|224496298|gb|ACN52530.1| gyrB [Pantoea agglomerans]
 gi|224496300|gb|ACN52531.1| gyrB [Pantoea agglomerans]
 gi|224496302|gb|ACN52532.1| gyrB [Pantoea agglomerans pv. gypsophilae]
 gi|224496306|gb|ACN52534.1| gyrB [Pantoea agglomerans]
 gi|224496308|gb|ACN52535.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 124/249 (49%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLDDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y+EK   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|224496320|gb|ACN52541.1| gyrB [Pantoea sp. EM17cb]
          Length = 246

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|281331638|emb|CAZ40013.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 232

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 115/234 (49%), Positives = 156/234 (66%), Gaps = 3/234 (1%)

Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183
           VSVVNALS  L L I + G  Y+  + +G   +PL   G +    GT + F PS   F  
Sbjct: 1   VSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPST-KRGTTLRFWPSVKAFHD 59

Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243
             +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV +L + K PL
Sbjct: 60  NVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVEHLAQLKTPL 118

Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303
             + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR + +Y
Sbjct: 119 HPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVLNNY 178

Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
           +E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE
Sbjct: 179 IEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVE 232


>gi|224496312|gb|ACN52537.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F Y+ L  RLRELS
Sbjct: 1   EGKVHQQVYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLDDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y+EK   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAKYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|224496194|gb|ACN52478.1| gyrB [Pantoea dispersa]
          Length = 246

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 125/249 (50%), Positives = 176/249 (70%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++++G+   PL VTG   + TGT V F PS D F+   DF Y+ L  RLRELS
Sbjct: 1   DGKVHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDDKN--DHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAAXAR 246


>gi|224496228|gb|ACN52495.1| gyrB [Enterobacter sp. ATCC 27985]
          Length = 246

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 124/249 (49%), Positives = 171/249 (68%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG I+   + +G+   PL VTG     TGT V F PS + F+   DF Y+ L  RLRELS
Sbjct: 1   EGKIHRQIYQHGVPQAPLAVTGDTE-KTGTMVRFWPSLETFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLRDKRDNKE--DHFHYEGGIRAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|182375398|gb|ACB87502.1| DNA gyrase subunit B [gamma proteobacterium KMD 001]
          Length = 276

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 142/279 (50%), Positives = 199/279 (71%), Gaps = 3/279 (1%)

Query: 131 LSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190
           LSS L++ I+R GN+++  F +G+   PL V G   + TGTEVTF  S + FS   F++D
Sbjct: 1   LSSELRMTIRRAGNVHQQIFNDGVPREPLKVIGDT-DTTGTEVTFWASPETFSNIKFSFD 59

Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250
            L  RLRELSFLNS V I L D+R  + RE T  Y+GG++AFV YL+  K  +      I
Sbjct: 60  ILAKRLRELSFLNSGVCIVLKDER--DGREETFKYEGGLKAFVEYLNNKKNAINNVFHFI 117

Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310
           +   D +++++A++WND + E++ CFTNNIPQ+DGGTHL+G R+ALTR + +Y+EK    
Sbjct: 118 RERDDGVTVEVALQWNDSFQESIFCFTNNIPQRDGGTHLAGFRAALTRTLNTYIEKEGLL 177

Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEE 370
           KK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  + +    +L E
Sbjct: 178 KKQKVSTTGDDSREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGNSFGDFLLE 237

Query: 371 HPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           +P +AKI+V K+LDA+  R+AAR+AR++TRRKGVLDIA 
Sbjct: 238 NPQDAKIVVNKMLDAARAREAARKAREMTRRKGVLDIAG 276


>gi|224496342|gb|ACN52552.1| gyrB [Pantoea septica]
 gi|224496344|gb|ACN52553.1| gyrB [Pantoea sp. ATCC 29923]
          Length = 246

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 124/249 (49%), Positives = 177/249 (71%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++ ++++G+ + PL VTG   + TGT V F PS + F+   +F YD L  RLRELS
Sbjct: 1   EGKVHQQTYVHGVPEAPLNVTGET-DLTGTRVRFWPSHETFTNVVEFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKS--DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|224496226|gb|ACN52494.1| gyrB [Enterobacter sp. ATCC 29918]
          Length = 246

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 120/249 (48%), Positives = 170/249 (68%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +  ++   + +G+   PL VTG     TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   DNKVHRQIYTHGVPQAPLEVTGETE-KTGTMVRFWPSYETFTNVIEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLRDKRDGKE--DHFHYEGGIRAFVEYLNKNKTPIHPNIFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPADAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|5360239|dbj|BAA81914.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360285|dbj|BAA81922.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360325|dbj|BAA81942.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360437|dbj|BAA81998.1| DNA gyrase subunit B [Pseudomonas syringae pv. pisi]
 gi|5360445|dbj|BAA82002.1| DNA gyrase subunit B [Pseudomonas syringae pv. pisi]
 gi|5360453|dbj|BAA82006.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae]
 gi|5360461|dbj|BAA82010.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae]
 gi|5360469|dbj|BAA82014.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae]
          Length = 204

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 100/207 (48%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIG 319
           RSALTR + +Y+E+   +KK K +  G
Sbjct: 178 RSALTRNLNNYIEQEGLAKKHKVATTG 204


>gi|156312273|ref|XP_001617798.1| hypothetical protein NEMVEDRAFT_v1g225783 [Nematostella vectensis]
 gi|156195862|gb|EDO25698.1| predicted protein [Nematostella vectensis]
          Length = 281

 Score =  191 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 110/234 (47%), Positives = 156/234 (66%), Gaps = 4/234 (1%)

Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422
            L+ +LEE+P +AK IV+KV+ A+  R AAR+AR++ +RK V+ I  LPGKL+DCSE DP
Sbjct: 1   MLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSIGGLPGKLSDCSETDP 60

Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482
            + E+FLVEGDSAGG+AKQGR R  QAILPLRGKILNVE+A   K+  ++EI  + TALG
Sbjct: 61  AQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIKNMFTALG 120

Query: 483 TGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
             IG +      +++K+RYHK++IM DADVDG+HI TL+LTFFFR M  +I  G++YI  
Sbjct: 121 VSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATLILTFFFRYMREMIEQGYVYIAT 180

Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592
           PPLY + +G+  +Y  D+   +           I+ +     + ++      ++
Sbjct: 181 PPLYLVKKGQKREYAWDDNQRDLIAQKMGGGVTIQRYKGLGEMNAEQLWDTTMN 234



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 80/134 (59%), Gaps = 19/134 (14%)

Query: 679 GSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIKI---TGPCSLLDTIFSIGR 731
            + I +F  +Y R     IE+ Y+      L L+  G K +         L+       +
Sbjct: 156 ATLILTFFFRYMREM---IEQGYVYIATPPLYLVKKGQKREYAWDDNQRDLI------AQ 206

Query: 732 K---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788
           K   G+++QRYKGLGEMNA QLW+TT+NP+ R+L +V I + ++AD +FS LMGDEV PR
Sbjct: 207 KMGGGVTIQRYKGLGEMNAEQLWDTTMNPEFRTLRQVTIDNMTEADRVFSMLMGDEVPPR 266

Query: 789 REFIQENSLPSALD 802
           REFI++N+  + +D
Sbjct: 267 REFIEKNAKYANID 280


>gi|158252622|gb|ABW23795.1| DNA gyrase [Pantoea vagans]
          Length = 247

 Score =  191 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 176/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|294337976|emb|CBJ93814.1| Putative phage DNA topoisomerase (large subunit) [Campylobacter
           phage CP220]
          Length = 503

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 111/525 (21%), Positives = 191/525 (36%), Gaps = 73/525 (13%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDNAID 54
           I+ L   + + KRPSMYIG  D  +                    GL  +I E++DN++D
Sbjct: 2   IKKLTDREHILKRPSMYIGAIDSTNTEDFIIESGKIKYTTLNYVPGLIKIINEIIDNSVD 61

Query: 55  ESLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
            ++         I+V ++ D + ++ D+G GIP     +      E+      AG  F+ 
Sbjct: 62  AAIRSKFKSGLNISVKISND-TVSIEDDGTGIPVIKSGDH--YMPELAWNHAKAGSNFDD 118

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            + +V+ G +GVG    N  S   K  I  +G    +       +        A   +GT
Sbjct: 119 DANRVTIGTNGVGSYCTNVWSINFKG-ITDDGKNRYIFKSKNNAETYSENI-EASKKSGT 176

Query: 172 EVTFLPSSDIFSVQDF---NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            V F P  + F++++    + + +  RL  L+     +      K+              
Sbjct: 177 LVEFKPDLERFNLKEIDETHKNIIYQRLLNLAICYPEINFKFNSKKIDFKSFKNYLNMF- 235

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                            S         NI I +     D + +    F N +   DGG H
Sbjct: 236 -----------------SSDFELYENQNIKIGIIPNELDDFKQ--FSFVNGLKIPDGGVH 276

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKL 347
           +  + S + + I   + K        +S+   D +     V  I  MP+ +F+SQ+KEK+
Sbjct: 277 IDTIMSNVVQGIRDKLVK------KYKSIKPGDIKNKLMIVCFINGMPNLKFNSQSKEKI 330

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +S    V E      +        L+ K I+  ++D   V++A    + L   +    +
Sbjct: 331 TNS----VKEFNDFSNIDYNFINKILKNKSIIDPIIDIYKVKEALNADKALKSVEKSKKL 386

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            S              +  L + EG SA G   Q    E+ +   L+GK LN       K
Sbjct: 387 KSEK-----YFRATKSQKYLCICEGFSAYGGISQVLGNEHTSFYVLKGKPLNSWDVTNQK 441

Query: 468 MLSSQEIGTLITALG-----TGIGQDSFDINKLRYHKIIIMTDAD 507
             +++E+  L   L        +    F   K+   K  IM + D
Sbjct: 442 FAANRELSELYQILSENAEFEDLKDGKFYEIKID-GKTYIMNEND 485


>gi|259156947|gb|ACV95903.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
          Length = 271

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 139/274 (50%), Positives = 193/274 (70%), Gaps = 4/274 (1%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHR 195
           L I REG+I++ +++ G    PL V G     TGT V F PS   F +  +F YD L  R
Sbjct: 1   LTISREGSIHQXTYVMGEPQAPLKVMGKTE-LTGTRVRFWPSMKTFTNQTEFQYDILAKR 59

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           LRELSFLNS V I L DKR+ +       Y+GGI+AFV+YL+++K P+          +D
Sbjct: 60  LRELSFLNSGVFICLHDKRNDQE--KHFHYEGGIQAFVTYLNKNKTPIHPKVFYFSTVKD 117

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
           +I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+EK   SKK K 
Sbjct: 118 DIGVEIALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAMTRTMNSYMEKEGFSKKSKI 177

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           +  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +A
Sbjct: 178 NATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPSDA 237

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409
           K IV K++DA+  R+AAR+AR++TRRKG LD+A 
Sbjct: 238 KTIVNKIIDAARAREAARKAREMTRRKGALDLAG 271


>gi|157326779|gb|ABV44502.1| DNA gyrase subunit beta [Brevundimonas vesicularis]
          Length = 130

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/130 (61%), Positives = 95/130 (73%), Gaps = 6/130 (4%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           GRGIP D+H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVS VNAL+S+L+L+I
Sbjct: 1   GRGIPVDIHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSWVNALTSYLRLKI 60

Query: 140 KREGNIYEMSFINGILDNPLVVTGSAGND------TGTEVTFLPSSDIFSVQDFNYDTLQ 193
            R G  +EM F  G    PL VTG A          GT+VTF PS   F+  DF+  TL+
Sbjct: 61  YRNGKQHEMRFERGDTVTPLRVTGDAPMRENGKVLRGTQVTFFPSITTFAHIDFDLKTLE 120

Query: 194 HRLRELSFLN 203
           HRLREL+FLN
Sbjct: 121 HRLRELAFLN 130


>gi|219536322|gb|ACL18066.1| DNA gyrase subunit B [Pseudomonas sp. TLC13:6-6.5cm-3G]
          Length = 272

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 124/267 (46%), Positives = 178/267 (66%), Gaps = 3/267 (1%)

Query: 136 KLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHR 195
            L ++R G I+E ++I+G+   P+ + G +   TGT++ F PS   F    F++D L  R
Sbjct: 1   VLTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTGTQIHFKPSDLTFKNIHFSWDILAKR 59

Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255
           +RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ Q         D
Sbjct: 60  IRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQRED 117

Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315
            I +++A++WND ++EN+LC TNNIPQ+DGGTHL G RSALTR + +Y+E    +KK K 
Sbjct: 118 GIGVEIALQWNDSFNENLLCSTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKV 177

Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375
           +  GDD REG T+++S+K+PDP+FSS+TK+KLVSSEV++ VE  +   LS +L E P E 
Sbjct: 178 ATTGDDAREGLTAIISVKVPDPKFSSRTKDKLVSSEVKTAVEQEMGKYLSDFLLEKPNEG 237

Query: 376 KIIVKKVLDASMVRDAARRARDLTRRK 402
           K++V KV+DA+  R+A  + R  TRRK
Sbjct: 238 KLVVGKVMDAARAREAGGKDRKRTRRK 264


>gi|224496200|gb|ACN52481.1| gyrB [Enterobacter sp. ATCC 27993]
 gi|224496202|gb|ACN52482.1| gyrB [Enterobacter sp. ATCC 27994]
          Length = 246

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 174/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG ++   + +G+ + PL VTG     TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   EGKVHRQIYQHGVPEAPLAVTGDTE-KTGTLVRFWPSLETFTNVTEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L+E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSDYLQENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|192758066|gb|ACF04960.1| gyrase [Enterorhabdus mucosicola]
          Length = 237

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 166/237 (70%), Gaps = 1/237 (0%)

Query: 251 QGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309
           +    + ++++A++W+  Y  N V+ F NNI   +GGTH+ G + A+TR I  Y      
Sbjct: 1   EAENADGTVEVALQWSSSYSTNSVMAFANNINTHEGGTHMDGFKQAITRTINDYARAKGL 60

Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369
            K+   ++ G+D REG  +++S+K+ DP+F  QTK KL ++E+R +V++ V  GL+ +LE
Sbjct: 61  LKEKDNNLSGEDAREGLAAIISVKLHDPQFEGQTKTKLGNTEIRPLVQNAVTQGLAEYLE 120

Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429
           E+P  AK I+ K   A   R+AAR+AR++TRRK VLD  S+PGKLADC+ +D  +SE+F+
Sbjct: 121 ENPTPAKRIIGKATQALKAREAARKAREMTRRKNVLDSFSMPGKLADCASKDASQSEIFI 180

Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486
           VEGDSAGGSAKQ R R+ QAILPLRGKILNVERA   + LSS+ I +LITA+GT IG
Sbjct: 181 VEGDSAGGSAKQARDRKFQAILPLRGKILNVERAGLHRSLSSETISSLITAIGTNIG 237


>gi|5360333|dbj|BAA81946.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans]
 gi|5360349|dbj|BAA81954.1| DNA gyrase subunit B [Pseudomonas syringae pv. maculicola]
 gi|5360357|dbj|BAA81958.1| DNA gyrase subunit B [Pseudomonas syringae pv. maculicola]
 gi|5360509|dbj|BAA82034.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato]
          Length = 204

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 101/207 (48%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIG 319
           RSALTR + +Y+E+   +KK K +  G
Sbjct: 178 RSALTRNLNNYIEQEGLAKKHKVATTG 204


>gi|158252576|gb|ABW23772.1| DNA gyrase [Pantoea anthophila]
          Length = 247

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 177/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+ ++PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPESPLTVTGDT-DLTGTRVRFWPSYETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSNEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPADAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|158252506|gb|ABW23737.1| DNA gyrase [Pantoea sp. LMG 24202]
 gi|158252514|gb|ABW23741.1| DNA gyrase [Pantoea sp. LMG 24203]
 gi|158252516|gb|ABW23742.1| DNA gyrase [Pantoea sp. LMG 24248]
 gi|213054387|gb|ACJ39413.1| DNA gyrase [Pantoea allii]
 gi|213054389|gb|ACJ39414.1| DNA gyrase [Pantoea allii]
 gi|213054391|gb|ACJ39415.1| DNA gyrase [Pantoea allii]
 gi|213054393|gb|ACJ39416.1| DNA gyrase [Pantoea allii]
 gi|213054395|gb|ACJ39417.1| DNA gyrase [Pantoea allii]
          Length = 247

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 121/250 (48%), Positives = 173/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+   PL  TG   + TGT + F PS D F+   DF YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLAATGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L  +   + R     Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|158252540|gb|ABW23754.1| DNA gyrase [Pantoea punctata]
 gi|158252542|gb|ABW23755.1| DNA gyrase [Pantoea punctata]
 gi|158252560|gb|ABW23764.1| DNA gyrase [Pantoea punctata]
 gi|158252562|gb|ABW23765.1| DNA gyrase [Pantoea punctata]
 gi|158252564|gb|ABW23766.1| DNA gyrase [Pantoea punctata]
 gi|158252566|gb|ABW23767.1| DNA gyrase [Pantoea punctata]
          Length = 247

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 177/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++++G+   PL V G   + TGT V F  S   F+   DF YD L  RLRELS
Sbjct: 1   DGKVHQQTYLHGVPGAPLAVIGET-DSTGTSVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I LIDKRS +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLIDKRSDKS--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+++TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|158252510|gb|ABW23739.1| DNA gyrase [Pantoea ananatis]
 gi|158252518|gb|ABW23743.1| DNA gyrase [Pantoea ananatis]
 gi|158252520|gb|ABW23744.1| DNA gyrase [Pantoea ananatis]
 gi|158252528|gb|ABW23748.1| DNA gyrase [Pantoea ananatis]
          Length = 247

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 121/250 (48%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT + F PS D F+   DF YD L  RLRELS
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L  +   + R     Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+P+P+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPEPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|5360341|dbj|BAA81950.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans]
          Length = 204

 Score =  190 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 101/207 (48%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQKPMKIVGES-DTTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIG 319
           RSALTR + +Y+E+   +KK K +  G
Sbjct: 178 RSALTRNLNNYIEQEGLAKKHKVATTG 204


>gi|224496322|gb|ACN52542.1| gyrB [Pantoea sp. EM486]
 gi|224496324|gb|ACN52543.1| gyrB [Pantoea sp. EM595]
 gi|224496328|gb|ACN52545.1| gyrB [Pantoea sp. P8SAA]
          Length = 246

 Score =  190 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 122/249 (48%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           +G ++   +++G+   PL VTG   + TGT V F  S + F+   DF YD L  RLRELS
Sbjct: 1   DGKVHHQVYVHGVPQAPLAVTGET-DTTGTRVRFWASHNTFTNVLDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKS--DHFHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|5360381|dbj|BAA81970.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori]
          Length = 204

 Score =  190 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 101/207 (48%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIG 319
           RSALTR + +Y+E+   +KK K +  G
Sbjct: 178 RSALTRNLNNYIEQEGLAKKYKVATTG 204


>gi|158252456|gb|ABW23712.1| DNA gyrase [Pantoea vagans]
 gi|158252460|gb|ABW23714.1| DNA gyrase [Pantoea vagans]
 gi|158252462|gb|ABW23715.1| DNA gyrase [Pantoea vagans]
 gi|158252464|gb|ABW23716.1| DNA gyrase [Pantoea vagans]
 gi|158252466|gb|ABW23717.1| DNA gyrase [Pantoea vagans]
 gi|158252468|gb|ABW23718.1| DNA gyrase [Pantoea vagans]
 gi|158252472|gb|ABW23720.1| DNA gyrase [Pantoea vagans]
 gi|158252478|gb|ABW23723.1| DNA gyrase [Pantoea vagans]
 gi|158252480|gb|ABW23724.1| DNA gyrase [Pantoea vagans]
 gi|158252482|gb|ABW23725.1| DNA gyrase [Pantoea vagans]
 gi|158252486|gb|ABW23727.1| DNA gyrase [Pantoea vagans]
 gi|158252488|gb|ABW23728.1| DNA gyrase [Pantoea vagans]
 gi|158252522|gb|ABW23745.1| DNA gyrase [Pantoea vagans]
          Length = 247

 Score =  190 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 122/250 (48%), Positives = 176/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT V F PS + F+    F Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|5360397|dbj|BAA81978.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360405|dbj|BAA81982.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 204

 Score =  190 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 102/207 (49%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIG 319
           RSALTR + +Y+E+   +KK K +  G
Sbjct: 178 RSALTRNLNNYIEQEGLAKKHKVATTG 204


>gi|5360293|dbj|BAA81926.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360301|dbj|BAA81930.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360317|dbj|BAA81938.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea]
 gi|5360365|dbj|BAA81962.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori]
 gi|5360373|dbj|BAA81966.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori]
 gi|5360421|dbj|BAA81990.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360485|dbj|BAA82022.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci]
          Length = 204

 Score =  190 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 101/207 (48%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIG 319
           RSALTR + +Y+E+   +KK K +  G
Sbjct: 178 RSALTRNLNNYIEQEGLAKKHKVATTG 204


>gi|294338171|emb|CBJ94207.1| Putative phage DNA topoisomerase (large subunit) [Campylobacter
           phage CPt10]
          Length = 503

 Score =  190 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 182/495 (36%), Gaps = 67/495 (13%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES--------------------GLHHMIYEVLDNAID 54
           I+ L   + + KRPSMYIG  D  +                    GL  +I E++DN++D
Sbjct: 2   IKKLTDREHILKRPSMYIGAIDSTNTEDFIIESGKIKYTTLNYVPGLIKIINEIIDNSVD 61

Query: 55  ESLE---GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
            ++         I+V ++ D + ++ D+G GIP     +      E+      AG  F+ 
Sbjct: 62  AAIRSKFKSGLNISVKISND-TVSIEDDGTGIPVIKSGDH--YMPELAWNHAKAGSNFDD 118

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171
            + +V+ G +GVG    N  S   K  I  +G    +       +        A   +GT
Sbjct: 119 DANRVTIGTNGVGSYCTNVWSINFKG-ITDDGKNRYIFKSKNNAETYSENI-EASKKSGT 176

Query: 172 EVTFLPSSDIFSVQDF---NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228
            V F P  + F++++    + + +  RL  L+     +      K+              
Sbjct: 177 LVEFKPDLERFNLKEIDETHKNIIYQRLLNLAICYPEINFKFNSKKIDFKSFKNYLNMF- 235

Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
                            S         NI I +     D + +    F N +   DGG H
Sbjct: 236 -----------------SSDFELYENQNIKIGIIPNELDDFKQ--FSFVNGLKIPDGGVH 276

Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK-MPDPRFSSQTKEKL 347
           +  + S + + I   + K        +S+   D +     V  I  MP+ +F+SQ+KEK+
Sbjct: 277 IDTIMSNVVQGIRDKLVK------KYKSIKPGDIKNKLMIVCFINGMPNLKFNSQSKEKI 330

Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407
            +S    V E      +        L+ K I+  ++D   V++A    + L   +    +
Sbjct: 331 TNS----VKEFNDFSNIDYNFINKILKNKSIIDPIIDIYKVKEALNADKALKSVEKSKKL 386

Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467
            S              +  L + EG SA G   Q    E+ +   L+GK LN       K
Sbjct: 387 KSEK-----YFRATKSQKYLCICEGFSAYGGISQVLGNEHTSFYVLKGKPLNSWDVTNQK 441

Query: 468 MLSSQEIGTLITALG 482
             +++E+  L   L 
Sbjct: 442 FAANRELSELYQILS 456


>gi|158252490|gb|ABW23729.1| DNA gyrase [Pantoea deleyi]
          Length = 247

 Score =  190 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 122/250 (48%), Positives = 176/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+ + PL +TG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPEAPLAITGDT-DLTGTRVRFWPSYETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKS--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSNEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPADAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|315936446|gb|ADU55851.1| DNA gyrase [Erwinia tracheiphila]
 gi|315936448|gb|ADU55852.1| DNA gyrase [Erwinia tracheiphila]
          Length = 247

 Score =  190 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  + +G+   PL VTG   + TGT V F PS + F+   DF Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYAHGVPQAPLGVTGET-DLTGTRVRFWPSHETFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDDKK--DHYHYEGGIKAFVEYLNRNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AK +V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKTVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|158252618|gb|ABW23793.1| DNA gyrase [Pantoea ananatis]
          Length = 247

 Score =  190 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+ D PL VTG   + TGT + F PS D F+   DF YD L  RLRELS
Sbjct: 1   EGKVHQQIYLHGVPDAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L  +   + R     Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|551761|gb|AAA73151.1| gyrB [Buchnera aphidicola]
          Length = 91

 Score =  190 bits (484), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 71/89 (79%)

Query: 8  SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +YD+  I+IL+GLDAV+KRP MYIGDTD  SGLHHM++E++DN+IDE+L G+   I V 
Sbjct: 3  DTYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVV 62

Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAA 96
          ++ D S ++ D+GRGIPTD+H EE ISAA
Sbjct: 63 IHSDNSVSIKDDGRGIPTDIHPEEKISAA 91


>gi|158252538|gb|ABW23753.1| DNA gyrase [Pantoea ananatis]
          Length = 247

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 121/250 (48%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT + F PS D F+   DF YD L  RLRELS
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L  +   + R     Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P + KI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDPKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|5360389|dbj|BAA81974.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 204

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 102/207 (49%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIG 319
           RSALTR + +Y+E+   +KK K +  G
Sbjct: 178 RSALTRNLNNYIEQEGLAKKYKVATTG 204


>gi|315936460|gb|ADU55858.1| DNA gyrase [Erwinia persicina]
 gi|315936462|gb|ADU55859.1| DNA gyrase [Erwinia persicina]
          Length = 247

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 120/250 (48%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++ ++++G+   PL V+G   + TGT V F PS   F+   +F Y+ L  RLRELS
Sbjct: 1   EGKVHQQTYVHGVPQAPLSVSGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDGKS--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPTDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|158252554|gb|ABW23761.1| DNA gyrase [Pantoea citrea]
 gi|169667009|gb|ACA64035.1| GyrB [Tatumella morbirosei]
 gi|169667011|gb|ACA64036.1| GyrB [Tatumella morbirosei]
          Length = 247

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 177/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++++G+   PL V G   + TGT V F  S   F+   DF YD L  RLRELS
Sbjct: 1   DGKVHQQTYLHGVPSAPLNVVGET-DSTGTSVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I LIDKRS +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLIDKRSDKS--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+++TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|5360309|dbj|BAA81934.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360413|dbj|BAA81986.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 204

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 101/207 (48%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS++ F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K P+ Q         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIG 319
           RSALTR + +Y+E+   +KK K +  G
Sbjct: 178 RSALTRNLNNYIEQEGLAKKHKVATTG 204


>gi|5360277|dbj|BAA81918.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360477|dbj|BAA82018.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae]
 gi|5360493|dbj|BAA82026.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360501|dbj|BAA82030.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 204

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 102/207 (49%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++I+G+   P+ + G + + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K P+ +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIG 319
           RSALTR + +Y+E+   +KK K +  G
Sbjct: 178 RSALTRNLNNYIEQEGLAKKHKVATTG 204


>gi|217030911|gb|ACJ74056.1| DNA gyrase [Erwinia psidii]
 gi|295639553|gb|ADG21991.1| DNA gyrase [Erwinia psidii]
 gi|295639555|gb|ADG21992.1| DNA gyrase [Erwinia psidii]
 gi|295639557|gb|ADG21993.1| DNA gyrase [Erwinia psidii]
 gi|295639559|gb|ADG21994.1| DNA gyrase [Erwinia psidii]
 gi|295639561|gb|ADG21995.1| DNA gyrase [Erwinia psidii]
 gi|295639563|gb|ADG21996.1| DNA gyrase [Erwinia psidii]
 gi|315936450|gb|ADU55853.1| DNA gyrase [Erwinia psidii]
 gi|315936452|gb|ADU55854.1| DNA gyrase [Erwinia psidii]
          Length = 247

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS-DIFSVQDFNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS     +V DF Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHATFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDDKK--DHYHYEGGIKAFVEYLNRNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AK +V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKTVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|283467016|emb|CBI61643.1| DNA gyrase subunit B [Acinetobacter sp. A1PC16]
          Length = 274

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 140/276 (50%), Positives = 184/276 (66%), Gaps = 3/276 (1%)

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALSS L+L I R G I++  + +G    PL V       TGT V F PS++ FS   
Sbjct: 1   VVNALSSKLELTIHRAGQIHQQEYCHGDSVYPLKVV-GTTETTGTTVRFWPSAETFSQTI 59

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246
           FN D L  RLRELSFLN+ V+I L D+R     E    Y+GG+  FV Y+++ K  L + 
Sbjct: 60  FNVDILARRLRELSFLNAGVRIVLRDERVA--LEHIYDYEGGLSEFVKYMNQGKTHLNEI 117

Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306
                 S   I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR +  Y+E 
Sbjct: 118 FHFTADSDQGIMVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLNQYLES 177

Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366
               KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE  +N   S 
Sbjct: 178 ENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQAMNKAFSE 237

Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
           +L E+P  AK I  K++DA+  RDAAR+AR++TRRK
Sbjct: 238 YLLENPTAAKSIAGKIIDAARARDAARKAREMTRRK 273


>gi|224496246|gb|ACN52504.1| gyrB [Pantoea sp. SC-1]
 gi|224496248|gb|ACN52505.1| gyrB [Pantoea sp. EM13cb]
          Length = 246

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 176/249 (70%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+ ++PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPESPLTVTGDT-DLTGTRVRFWPSYETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSNEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPADAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|164456661|dbj|BAF97823.1| gyrase B subunit [Vibrio ezurae]
          Length = 264

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 127/251 (50%), Positives = 180/251 (71%), Gaps = 3/251 (1%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           + L I+R G+I+  ++ +G    PL V G   + TGTE+ F PS + F+  +F+YD L  
Sbjct: 1   VTLTIQRGGHIHAQTYRHGEPQAPLAVVGDT-DKTGTEIRFWPSEETFTNIEFHYDILAK 59

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  E +     ++GGI+AFV +L+ +K P++Q        R
Sbjct: 60  RLRELSFLNSGVSIKLVDER-EEDKSDHFMFEGGIQAFVDHLNTNKTPIIQKIFHFDSER 118

Query: 255 DN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           D+ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR + ++++K   SKK 
Sbjct: 119 DDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRTLNTFMDKEGFSKKA 178

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P 
Sbjct: 179 KAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPG 238

Query: 374 EAKIIVKKVLD 384
           EAKI+  K++D
Sbjct: 239 EAKIVCGKIID 249


>gi|224496350|gb|ACN52556.1| gyrB [Pantoea punctata]
          Length = 246

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 176/249 (70%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++++G+   PL V G   + TGT V F  S   F+   DF YD L  RLRELS
Sbjct: 1   DGKVHQQTYLHGVPGAPLAVIGET-DSTGTSVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I LIDKRS +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLIDKRSDKS--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+++TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|158252492|gb|ABW23730.1| DNA gyrase [Pantoea ananatis]
 gi|158252496|gb|ABW23732.1| DNA gyrase [Pantoea ananatis]
 gi|158252508|gb|ABW23738.1| DNA gyrase [Pantoea ananatis]
 gi|158252512|gb|ABW23740.1| DNA gyrase [Pantoea ananatis]
 gi|158252524|gb|ABW23746.1| DNA gyrase [Pantoea ananatis]
 gi|158252530|gb|ABW23749.1| DNA gyrase [Pantoea ananatis]
 gi|158252532|gb|ABW23750.1| DNA gyrase [Pantoea ananatis]
 gi|158252536|gb|ABW23752.1| DNA gyrase [Pantoea ananatis]
 gi|158252548|gb|ABW23758.1| DNA gyrase [Pantoea ananatis LMG 20103]
 gi|158252550|gb|ABW23759.1| DNA gyrase [Pantoea ananatis]
 gi|158252552|gb|ABW23760.1| DNA gyrase [Pantoea ananatis]
 gi|158252598|gb|ABW23783.1| DNA gyrase [Pantoea ananatis]
 gi|158252600|gb|ABW23784.1| DNA gyrase [Pantoea ananatis]
 gi|158252606|gb|ABW23787.1| DNA gyrase [Pantoea ananatis]
 gi|158252608|gb|ABW23788.1| DNA gyrase [Pantoea ananatis]
          Length = 247

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 122/250 (48%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT + F PS D F+   DF YD L  RLRELS
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L  +   + R     Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|158252484|gb|ABW23726.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252494|gb|ABW23731.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252590|gb|ABW23779.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252592|gb|ABW23780.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252594|gb|ABW23781.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252602|gb|ABW23785.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252604|gb|ABW23786.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252610|gb|ABW23789.1| DNA gyrase [Pantoea stewartii subsp. stewartii]
 gi|158252612|gb|ABW23790.1| DNA gyrase [Pantoea stewartii subsp. stewartii]
 gi|158252614|gb|ABW23791.1| DNA gyrase [Pantoea stewartii subsp. stewartii]
          Length = 247

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 124/250 (49%), Positives = 177/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT + F PS D F+   DF YD L  RLRELS
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKN--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|224496250|gb|ACN52506.1| gyrB [Pantoea sp. C9-1]
          Length = 246

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 122/249 (48%), Positives = 175/249 (70%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT V F PS + F+    F Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|224496340|gb|ACN52551.1| gyrB [Pantoea oleae]
          Length = 246

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 122/248 (49%), Positives = 173/248 (69%), Gaps = 4/248 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+   DF Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DITGTRVRFWPSHETFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMV 388
           K++DA+  
Sbjct: 238 KIIDAARA 245


>gi|315936440|gb|ADU55848.1| DNA gyrase [Erwinia papayae]
 gi|315936442|gb|ADU55849.1| DNA gyrase [Erwinia mallotivora]
 gi|315936444|gb|ADU55850.1| DNA gyrase [Erwinia mallotivora]
          Length = 247

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 124/250 (49%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+   DF Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+R+K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDDKK--DHYHYEGGIKAFVEYLNRNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L  +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLGEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|158252656|gb|ABW23812.1| DNA gyrase [Erwinia toletana]
          Length = 247

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 120/250 (48%), Positives = 176/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+   PL V+G   + TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   EGKVHQQVYVHGVPQAPLAVSGET-DLTGTRVRFWPSHETFTNVIEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKS--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L  +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETQMNERLVEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|158252556|gb|ABW23762.1| DNA gyrase [Pantoea punctata]
          Length = 247

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 121/250 (48%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++++G+   PL V G   + TGT V F  S   F+   DF YD L  RLRELS
Sbjct: 1   DGKVHQQTYLHGVPGAPLAVIGET-DSTGTSVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I LIDKRS +       Y+GGI+AF   L+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLIDKRSDKS--DHYHYEGGIKAFAGDLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+++TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK KLVSSEV+S VES +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKNKLVSSEVKSAVESQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|224496222|gb|ACN52492.1| gyrB [Klebsiella sp. CECT 4842]
          Length = 246

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 121/249 (48%), Positives = 171/249 (68%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           +  I+   + +G+   PL VTG     TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   DNKIHRQLYAHGVPQAPLAVTGETE-KTGTMVRFWPSYETFTNVVEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLNEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|281332000|emb|CAZ39974.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 236

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 117/236 (49%), Positives = 154/236 (65%), Gaps = 3/236 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSV NALS  L + + + G+ Y+  F NG     L     A    GT V F PS+  
Sbjct: 3   GVGVSVDNALSQKLLVDVFQNGSHYQQEFSNGAAVTALAKL-EATTKRGTTVRFWPSTVA 61

Query: 182 FS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L + K
Sbjct: 62  FHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQLK 120

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR +
Sbjct: 121 TPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVL 180

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
            +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  V
Sbjct: 181 NNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAV 236


>gi|281429812|gb|ADA70042.1| DNA gyrase subunit B [Erwinia persicina]
          Length = 246

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 120/249 (48%), Positives = 174/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++ ++++G+   PL V+G   + TGT V F PS   F+   +F Y+ L  RLRELS
Sbjct: 1   EGKVHQQTYVHGVPQAPLSVSGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDGKS--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPTDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|224496276|gb|ACN52519.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 124/249 (49%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLDDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y+EK   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAAXAR 246


>gi|158252458|gb|ABW23713.1| DNA gyrase [Erwinia sp. BCC003]
          Length = 247

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 176/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS + F+   +F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLGVTGET-DVTGTRVRFWPSLETFTNVTEFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPNDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|224496352|gb|ACN52557.1| gyrB [Tatumella morbirosei]
          Length = 246

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 176/249 (70%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +G +++ ++++G+   PL V G   + TGT V F  S   F+   DF YD L  RLRELS
Sbjct: 1   DGKVHQQTYLHGVPSAPLNVVGET-DSTGTSVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I LIDKRS +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLIDKRSDKS--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+++TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|224496326|gb|ACN52544.1| gyrB [Pantoea sp. P10QLC]
          Length = 246

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 121/249 (48%), Positives = 172/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           +G ++   +++G+   PL VTG   + TGT V F  S + F+   DF YD L  RLRELS
Sbjct: 1   DGKVHHQVYVHGVPQAPLAVTGET-DTTGTRVRFWASHNTFTNVLDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKS--DHFHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ E + CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQEIIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|164456747|dbj|BAF97866.1| gyrase B subunit [Vibrio superstes]
          Length = 261

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 125/247 (50%), Positives = 178/247 (72%), Gaps = 3/247 (1%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           + L I+R G+++  ++ +G  + PL V G   + TGTE+ F PS   F+  +F+YD L  
Sbjct: 2   VTLTIQRGGHVHSQTYHHGEPEAPLAVVGDT-DQTGTEIRFWPSEGTFNNIEFHYDILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  E +     ++GGI+AFV++L+ +K P++Q        R
Sbjct: 61  RLRELSFLNSGVSIRLVDER-EEDKSDHFMFEGGIQAFVNHLNTNKTPIIQKIFHFDFER 119

Query: 255 DN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           ++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G RSALTR + S+++K   SKK+
Sbjct: 120 EDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNSFMDKEGFSKKE 179

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPL 373
           K S  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P 
Sbjct: 180 KTSTSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPN 239

Query: 374 EAKIIVK 380
           EAKI+  
Sbjct: 240 EAKIVCS 246


>gi|224496244|gb|ACN52503.1| gyrB [Pantoea stewartii subsp. stewartii]
          Length = 246

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 124/249 (49%), Positives = 176/249 (70%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT + F PS D F+   DF YD L  RLRELS
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKN--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|45126715|dbj|BAD12205.1| DNA gyrase subunit B [Halomonas sp. SMT L4]
          Length = 276

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/256 (45%), Positives = 168/256 (65%), Gaps = 3/256 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS+ L+L I R+G ++E  + +G+   PL V G     +GT V F PS + F   +F+
Sbjct: 11  NALSAELRLTIWRQGEVFEQMYRHGVPQAPLGVVGKTE-KSGTRVHFRPSPETFGNIEFH 69

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           +D L  RLRELSFLNS V I L+D+RS +       Y+GG+ AFV +L+ +K  +     
Sbjct: 70  FDILAKRLRELSFLNSGVAIRLLDERSGKE--ELFHYEGGLRAFVDHLNTNKSVINPVFH 127

Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
                 D + +++AM+W++ + EN+ C+TNNIPQ+DGG HL+G R+ LTR + +Y+E   
Sbjct: 128 FNAVRDDGVEVEVAMQWSEAFTENIFCYTNNIPQRDGGAHLAGFRAGLTRTLNNYIEAEN 187

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
             KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  ++   S +L
Sbjct: 188 LLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMSRLFSEYL 247

Query: 369 EEHPLEAKIIVKKVLD 384
            E P EAK IV K+LD
Sbjct: 248 VEKPNEAKAIVNKMLD 263


>gi|224496330|gb|ACN52546.1| gyrB [Pantoea sp. ATCC 27991]
 gi|224496332|gb|ACN52547.1| gyrB [Pantoea sp. ATCC 27992]
 gi|224496334|gb|ACN52548.1| gyrB [Pantoea sp. LMG 5341]
          Length = 246

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 174/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++  +++G+   PL VTG   + TGT V F PS   F+   +F Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|224496230|gb|ACN52496.1| gyrB [Pantoea ananatis]
 gi|224496232|gb|ACN52497.1| gyrB [Pantoea ananatis]
 gi|224496234|gb|ACN52498.1| gyrB [Pantoea ananatis]
 gi|224496236|gb|ACN52499.1| gyrB [Pantoea ananatis]
 gi|224496238|gb|ACN52500.1| gyrB [Pantoea ananatis LMG 20103]
          Length = 246

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 122/249 (48%), Positives = 174/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT + F PS D F+   DF YD L  RLRELS
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L  +   + R     Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|158252470|gb|ABW23719.1| DNA gyrase [Pantoea vagans]
          Length = 247

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 122/250 (48%), Positives = 176/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT V F PS + F+    F Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEHQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|5360429|dbj|BAA81994.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
          Length = 204

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 100/207 (48%), Positives = 141/207 (68%), Gaps = 3/207 (1%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALS  L L ++R G I+E ++++G+   P+ + G + + TGT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQ 59

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           + F PS+D F    F++D L  R+RELSFLNS V I L D+RS +       Y+GG+ AF
Sbjct: 60  IHFKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAF 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+ +K  + +         D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G 
Sbjct: 118 VEYLNTNKTLVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 177

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIG 319
           RSALTR + +Y+E+   +KK K +  G
Sbjct: 178 RSALTRNLNNYIEQEGLAKKHKVATTG 204


>gi|326379124|gb|ADZ57475.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|326379126|gb|ADZ57476.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|326379132|gb|ADZ57479.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|326379134|gb|ADZ57480.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|326379136|gb|ADZ57481.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|326379138|gb|ADZ57482.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 456

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 194/454 (42%), Gaps = 40/454 (8%)

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           +V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G++ 
Sbjct: 1   KVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGLKD 52

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            +      +  +    I + G    I+I         Y E    F N      GGTHL  
Sbjct: 53  LLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHLGA 108

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S++
Sbjct: 109 FRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGSTD 159

Query: 352 V-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD---LTRR 401
           +       R+ V  F+   L  +L ++P  A ++++K+L A   R      R       +
Sbjct: 160 MGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDRAK 219

Query: 402 KGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK L
Sbjct: 220 KSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPL 279

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N        +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR LL+
Sbjct: 280 NSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIATDADVDGMHIRLLLI 334

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TFF +  P +I  G LYI++ PL+ +   K   Y   E+   D +       EI  F   
Sbjct: 335 TFFLQFFPEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKLKPKPEITRF-KG 393

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
            G IS ++ +NFI + +++D ++ D   + +K  
Sbjct: 394 LGEISPDEFKNFIGETIRLDPVMLDKSTSIEKLL 427



 Score = 42.3 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 17/183 (9%)

Query: 626 SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
                 +   ++  N L       E       NN  I       G+  + +L    +  F
Sbjct: 282 YGMSKKIVYENEEFNLLQAALNIEESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQFF 341

Query: 686 GSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
               + I    +      +  +    + I         D I  + +    + R+KGLGE+
Sbjct: 342 ---PEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL-KPKPEITRFKGLGEI 397

Query: 746 NASQLW----ETT-LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800
           +  +      ET  L+P       V +  ++  + L    MG     R+ FI  N L   
Sbjct: 398 SPDEFKNFIGETIRLDP-------VMLDKSTSIEKLLEFYMGKNTPDRQTFIINN-LKVE 449

Query: 801 LDI 803
           LD+
Sbjct: 450 LDV 452


>gi|326379140|gb|ADZ57483.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 455

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 121/453 (26%), Positives = 193/453 (42%), Gaps = 40/453 (8%)

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G++  
Sbjct: 1   VSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGLKDL 52

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           +      +  +    I + G    I+I         Y E    F N      GGTHL   
Sbjct: 53  LEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHLGAF 108

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S+++
Sbjct: 109 RESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGSTDM 159

Query: 353 -------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD---LTRRK 402
                  R+ V  F+   L  +L ++P  A ++++K+L A   R      R       +K
Sbjct: 160 GPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDRAKK 219

Query: 403 GVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459
             L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK LN
Sbjct: 220 SNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLN 279

Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
                   +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR LL+T
Sbjct: 280 SYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIATDADVDGMHIRLLLIT 334

Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579
           FF +  P +I  G LYI++ PL+ +   K   Y   E+   D +       EI  F    
Sbjct: 335 FFLQFFPEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKLKPKPEITRF-KGL 393

Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
           G IS ++ +NFI + +++D ++ D   + +K  
Sbjct: 394 GEISPDEFKNFIGETIRLDPVMLDKSTSIEKLL 426



 Score = 42.3 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 17/183 (9%)

Query: 626 SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685
                 +   ++  N L       E       NN  I       G+  + +L    +  F
Sbjct: 281 YGMSKKIVYENEEFNLLQAALNIEESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQFF 340

Query: 686 GSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745
               + I    +      +  +    + I         D I  + +    + R+KGLGE+
Sbjct: 341 ---PEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL-KPKPEITRFKGLGEI 396

Query: 746 NASQLW----ETT-LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800
           +  +      ET  L+P       V +  ++  + L    MG     R+ FI  N L   
Sbjct: 397 SPDEFKNFIGETIRLDP-------VMLDKSTSIEKLLEFYMGKNTPDRQTFIINN-LKVE 448

Query: 801 LDI 803
           LD+
Sbjct: 449 LDV 451


>gi|294668237|ref|ZP_06733344.1| DNA topoisomerase IV, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309945|gb|EFE51188.1| DNA topoisomerase IV, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 429

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/401 (27%), Positives = 187/401 (46%), Gaps = 16/401 (3%)

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
            A+ W +        + N IP   GGTH +GL+ A+   + +++       +    V  D
Sbjct: 37  FALTWLEEGSCANESYVNLIPTPLGGTHEAGLKQAVFNAVNNFINLHNLLPRG-VKVQSD 95

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D       VLS ++ DP+F  QTK+KL + +   +V +   D L  WL ++    K I +
Sbjct: 96  DVFSKTAFVLSARVLDPQFQGQTKDKLTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAE 155

Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440
             +  +  R  + +      +K    +A LPGKL DC   D +++ELFLVEGDSAGGSAK
Sbjct: 156 LAIRQAQARMRSVKK---IEKKKGSGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAK 212

Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDIN--KLRYH 498
             R +  QAILPLRGK+LN      D++  + EI  +  A+G      + + +   LRY 
Sbjct: 213 LARDKATQAILPLRGKVLNSFEVHPDQLFGNAEIHDISVAIGVDPHGINDNPDLSGLRYG 272

Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEES 558
           KI I++DADVDG+HI+ LLLT F+R  P L+ +G +Y+ +PPL+ +      +    + +
Sbjct: 273 KIAILSDADVDGSHIQVLLLTLFYRHFPKLVADGHIYVAQPPLFRVDVNAQGK---SKPA 329

Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618
            + Y ++Q+  + I         + K  ++       +    + +  P+  K        
Sbjct: 330 RKFYALDQNELDSIL------ERLQKEGVKETAYSISRFKG-LGEMNPDQLKDTTMHPDT 382

Query: 619 SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659
             +   +  +  +          +      + ++W     +
Sbjct: 383 RRLLQVQIPEGADDETRDIFVKLMGKGEAAARRAWMEREGD 423



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 9/94 (9%)

Query: 717 TGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDA 770
               S+L+ +   G K    S+ R+KGLGEMN  QL +TT++PDTR LL+V+I     D 
Sbjct: 338 NELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD- 396

Query: 771 SQADDLFSRLMGD-EVEPRREFIQENSLPSALDI 803
            +  D+F +LMG  E   RR +++     + LDI
Sbjct: 397 -ETRDIFVKLMGKGEAAARRAWMEREGDTAELDI 429


>gi|158252658|gb|ABW23813.1| DNA gyrase [Erwinia billingiae]
          Length = 247

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/250 (48%), Positives = 173/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG ++   +++G+   PL VTG   + TGT V F PS   F+   DF Y+ L  RLRELS
Sbjct: 1   EGKVHNQIYVHGVPQAPLHVTGET-DLTGTRVRFWPSHQTFTNVTDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L  +   + R+    Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKL--EDKRDARQDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPTDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|159576566|dbj|BAF92831.1| DNA gyrase subunit B [Halomonas hydrothermalis]
          Length = 322

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/329 (35%), Positives = 165/329 (50%), Gaps = 9/329 (2%)

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTE 172
           YKV GGLHGVGVSVVNALS  L + + R+G  + M+F  G     L   G  A   +GT 
Sbjct: 1   YKVCGGLHGVGVSVVNALSRRLDVEVTRDGGRHAMAFEFGQKVEELHEIGKAAKRASGTL 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           V F P    F         L+H LR  + L   + ++L++    +       +  G+  +
Sbjct: 61  VRFWPDESYFDSPKLALGKLKHLLRAKAVLCPGLAVTLVEPDGTKTEWE---FADGLRDY 117

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSG 291
           +       + L  SP     + D   +D A++W  +G    +  + N IP   GGTH++G
Sbjct: 118 LVEATDGYEVLPPSPFVGHFTDDENGVDWAIQWLPEGGDALLESYVNLIPTPQGGTHVNG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            RS L   +  + E      +    +  DD  E  + VLS+KM DP+F+ QTKE+L S  
Sbjct: 178 FRSGLLDALREFCEYRSLLPRG-IKLTADDLWERASFVLSVKMLDPQFAGQTKERLSSRT 236

Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411
           +   V   + D  S WL  H  + + + + V++A+  R           RK V    +LP
Sbjct: 237 IAGFVSGVLKDAFSLWLNHHVDQGEALAELVINAAQRRQKKA---KKVARKKVTSGPALP 293

Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAK 440
           GKLADCS +DP +SELFLVEGDSAGGSAK
Sbjct: 294 GKLADCSGQDPAQSELFLVEGDSAGGSAK 322


>gi|224496242|gb|ACN52502.1| gyrB [Pantoea stewartii subsp. indologenes]
          Length = 246

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  + +G+ + PL VTG   + TGT + F PS D F+   DF YD L  RLRELS
Sbjct: 1   EGKVHQQIYXHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKN--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A+ WNDG+ EN+ CFTNNIP +DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALXWNDGFQENIYCFTNNIPLRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|224496296|gb|ACN52529.1| gyrB [Pantoea agglomerans]
 gi|224496304|gb|ACN52533.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 122/247 (49%), Positives = 171/247 (69%), Gaps = 4/247 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202
            +++  +++G+   PL VTG   + TGT V F PS + F+    F YD L  RLRELSFL
Sbjct: 3   KVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELSFL 61

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262
           NS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I +++A
Sbjct: 62  NSGVSIRLDDKRDGKS--DHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVEVA 119

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322
           ++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y+EK   SKK K S  GDD 
Sbjct: 120 LQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGDDA 179

Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382
           REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V K+
Sbjct: 180 REGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVGKI 239

Query: 383 LDASMVR 389
           +DA+  R
Sbjct: 240 IDAARAR 246


>gi|326314822|gb|ADZ53067.1| DNA gyrase subunit B [Kribbella sp. XMU198]
          Length = 274

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 124/245 (50%), Positives = 164/245 (66%), Gaps = 2/245 (0%)

Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377
            GDD REG T+++S+K+ +P+F  QTK KL ++EV+  V+  VND L AW E++P E + 
Sbjct: 3   TGDDIREGLTAIISVKLGEPQFEGQTKTKLGNTEVKGFVQKVVNDKLGAWFEQNPAEGRE 62

Query: 378 IV-KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436
           I+ K    AS    A +       RKG+L    LPGKL+DC   +P++ E+++VEGDSAG
Sbjct: 63  IIRKATAAASARIAARKARDLARNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAG 122

Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496
           GSAK GR  + QAILP+RGKILNVE+AR DK+L + E+  +I+ALGTGI +D FD  KLR
Sbjct: 123 GSAKGGRDPKFQAILPIRGKILNVEKARIDKVLQNNEVQAIISALGTGIHED-FDEEKLR 181

Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556
           YHKI+IM DADVDG HIRTLLLT  FR M  LI  G +Y  +PPLY +    +   +   
Sbjct: 182 YHKIVIMADADVDGQHIRTLLLTLLFRFMRPLIERGHVYAAQPPLYKLRWSNATHELAYT 241

Query: 557 ESLED 561
           E  +D
Sbjct: 242 EREKD 246


>gi|224496216|gb|ACN52489.1| gyrB [Enterobacter sp. LMG 5337]
          Length = 246

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 119/249 (47%), Positives = 170/249 (68%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           +  ++   + +G+   PL VTG     TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   DNKVHRQIYEHGVPQAPLAVTGDTE-KTGTMVRFWPSYETFTNVTEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLKDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGG HL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGXHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAAXAR 246


>gi|46205568|ref|ZP_00048360.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 230

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/230 (47%), Positives = 147/230 (63%), Gaps = 8/230 (3%)

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTD 505
           LPLRGKILN ER R D+MLSS EIGTLITALG GIG+ S     F+ +KLRYH+IIIMTD
Sbjct: 2   LPLRGKILNFERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTD 61

Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565
           ADVDG+HIRTLLLTFFFRQMP +I  G LYI +PPLY   RG+   Y+KDE +LEDYLI+
Sbjct: 62  ADVDGSHIRTLLLTFFFRQMPEIIERGHLYIAQPPLYKAERGRRAIYLKDERALEDYLID 121

Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF--N 623
           Q +   +     S        L+  +++A     +++  +  +D++ +EQAV++G F  +
Sbjct: 122 QGVEGAVL-RLASGTEFGGAQLKTLVEEARAFRGILQGLHTRYDRSVVEQAVLAGAFAKD 180

Query: 624 CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQE 673
              +      LA + A RL+ IA++ EK W G+      +  R  R V++
Sbjct: 181 AAENPGEAEVLADRTAKRLDRIADEIEKGWTGAAQEGGYVFNRTLRSVRQ 230


>gi|158252626|gb|ABW23797.1| DNA gyrase [Erwinia rhapontici]
          Length = 247

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 120/250 (48%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++  +++G+   PL V+G   + TGT V F PS   F+   +F Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVSGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDGKS--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|281331660|emb|CAZ40024.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 247

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 116/246 (47%), Positives = 159/246 (64%), Gaps = 3/246 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDF 187
           NALS  L + + + G  Y+  F NG   +PL     +    GT V F PS+  F    +F
Sbjct: 2   NALSQKLLVDVFQGGFHYQQEFSNGAAVSPLAKL-ESTTKRGTTVRFWPSTVAFHDNVEF 60

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L + K PL  + 
Sbjct: 61  HYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQLKTPLHPNV 119

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR + +Y+E++
Sbjct: 120 IAVSGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVLNNYIEQN 179

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VES     L  +
Sbjct: 180 GIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVESAFGQRLEEF 239

Query: 368 LEEHPL 373
           L+E+P 
Sbjct: 240 LQENPN 245


>gi|326379130|gb|ADZ57478.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 456

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 194/454 (42%), Gaps = 40/454 (8%)

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           +V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G++ 
Sbjct: 1   KVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGLKD 52

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            +      +  +    I + G    I+I         Y E    F N      GGTHL  
Sbjct: 53  LLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHLGA 108

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S++
Sbjct: 109 FRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGSTD 159

Query: 352 V-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD---LTRR 401
           +       R+ V  F+   L  +L ++P  A ++++K+L A   R      R       +
Sbjct: 160 MGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDRAK 219

Query: 402 KGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK L
Sbjct: 220 KSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPL 279

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N        +  ++E   L  AL          +  LRY+ I+I TDADVDG HIR LL+
Sbjct: 280 NSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNTIVIATDADVDGMHIRLLLI 334

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TFF +  P +I  G LYI++ PL+ +   K   Y   E+   D +       EI  F   
Sbjct: 335 TFFLQFFPEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKLKPKPEITRF-KG 393

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
            G IS ++ +NFI + +++D ++ D   + +K  
Sbjct: 394 LGEISPDEFKNFIGETIRLDPVMLDKSTSIEKLL 427



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 16/136 (11%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +L  +    F  +  +     +      +  +    + I         D I  + + 
Sbjct: 328 HIRLLLITFFLQFFPEMIKE--GHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL-KP 384

Query: 733 GISMQRYKGLGEMNASQLW----ETT-LNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
              + R+KGLGE++  +      ET  L+P       V +  ++  + L    MG     
Sbjct: 385 KPEITRFKGLGEISPDEFKNFIGETIRLDP-------VMLDKSTSIEKLLEFYMGKNTPD 437

Query: 788 RREFIQENSLPSALDI 803
           R+ FI  N L   LD+
Sbjct: 438 RQTFIINN-LKVELDV 452


>gi|115500942|dbj|BAF34141.1| B subunit gyrase [Azotobacter beijerinckii]
          Length = 211

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 104/210 (49%), Positives = 145/210 (69%), Gaps = 4/210 (1%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGL GVGVSVVNALS  L L I+R+G ++E ++++G+   PL   G     TGT++ F 
Sbjct: 1   SGGLDGVGVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQAPLAAVGDTE-GTGTQIHFK 59

Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           PS++ F    F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV YL
Sbjct: 60  PSAETFHNIHFSWDILAKRLRELSFLNSGVGIVLKDERSGKE--ELFSYEGGLKAFVEYL 117

Query: 237 DRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           + HK  + Q  +  +Q   D + +++A++WNDG++EN+LCFTNNIPQ+DGGTHL+G RSA
Sbjct: 118 NTHKTAVNQVFLFNVQHEEDGVGVEVALQWNDGFNENILCFTNNIPQRDGGTHLAGFRSA 177

Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREG 325
           LTR + +Y+E+   +KK K +  GDD REG
Sbjct: 178 LTRNLNAYIEQEGLAKKHKVATTGDDAREG 207


>gi|158252534|gb|ABW23751.1| DNA gyrase [Pantoea vagans]
          Length = 247

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 121/250 (48%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+ +  L VTG   + TGT V F PS + F+    F Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPEASLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|111380616|gb|ABH09687.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 191

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 111/192 (57%), Positives = 146/192 (76%), Gaps = 1/192 (0%)

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SEV  +     ++    +L E+P  A+ IV+K + AS  R AA+RAR
Sbjct: 1   PQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAR 60

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TR+K  L+I++LPGKLADCS  D  ++ELF+VEGDSAGGSAK GR+RE QAILP+RGK
Sbjct: 61  EVTRKKSGLEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGK 120

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+A  DK+L+++EI +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTL
Sbjct: 121 ILNVEKATMDKILANEEIRSLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTL 179

Query: 517 LLTFFFRQMPSL 528
           LLT  +R M  +
Sbjct: 180 LLTLIYRFMRPV 191


>gi|111380614|gb|ABH09686.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|111380618|gb|ABH09688.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 191

 Score =  187 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 111/191 (58%), Positives = 145/191 (75%), Gaps = 1/191 (0%)

Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396
           P+F  QTK KL +SEV  +     ++    +L E+P  A+ IV+K + AS  R AA+RAR
Sbjct: 1   PQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAR 60

Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
           ++TR+K  L+I++LPGKLADCS  D  ++ELF+VEGDSAGGSAK GR+RE QAILP+RGK
Sbjct: 61  EVTRKKSGLEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGK 120

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516
           ILNVE+A  DK+L+++EI +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTL
Sbjct: 121 ILNVEKATMDKILANEEIRSLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTL 179

Query: 517 LLTFFFRQMPS 527
           LLT  +R M  
Sbjct: 180 LLTLIYRFMRP 190


>gi|299741517|ref|XP_001834519.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298404747|gb|EAU87295.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 966

 Score =  187 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 30/230 (13%)

Query: 18  LKGLDAVKKRPSMYIGDT----------DGES------------GLHHMIYEVLDNAIDE 55
           L  L+ + KRP  YIG+           D E+            G   ++ E+L NA D 
Sbjct: 159 LTQLEHILKRPDSYIGNIEIISTPMWTYDSETIRMVHREVKYVPGFFKIVDEILVNAADN 218

Query: 56  SLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
            +     D + +T++  +G+ +V +NGRGIP ++H +E +   E+I   L     ++   
Sbjct: 219 KINDPSMDTLKITIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTSTNYDDDE 278

Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFINGILD-NPLVVTGSAGNDTG 170
            K++GG +G G  + N  S    +    +     Y+ ++ + +       +T +   +  
Sbjct: 279 KKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITKNTRGEEY 338

Query: 171 TEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQISLIDKRSPE 217
           T +TF P    F +   N DT+   + R+ +++     V++ L D+R  +
Sbjct: 339 TRITFRPDLKRFGMNSINEDTVNLLKRRVFDMADTVKDVKVLLNDERLKK 388



 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 118/298 (39%), Gaps = 12/298 (4%)

Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437
           IV  VL+ +  +   +  R    ++  L   +      +   R  +   L L EGDSA  
Sbjct: 435 IVDNVLNWAKFKADQQMKRADGTKRSRLLGLAKLSDANNAGTRHAQDCTLILTEGDSAKA 494

Query: 438 SAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494
            A  G     R+N  + PLRGK+LNV  A  D+++ ++EI  +   +G    +D  + + 
Sbjct: 495 LAIAGLGVVGRDNFGVFPLRGKLLNVREACHDQVMKNEEIQNIKKIMGLQHNKDYTNTSS 554

Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554
           LRY +++IMTD D DG+HI+ L++ F     PSL+         P            YVK
Sbjct: 555 LRYGRVMIMTDQDHDGSHIKGLIINFLDHLYPSLLK-------IPDFLVEFVTPLSGYVK 607

Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614
               ++D+       + +E   D++   SK        +     +              +
Sbjct: 608 KGNKVKDFFTIPEYEQWLEETPDARKWESKY--YKGFSEDKGAREYFSKMEKRFHLHRRK 665

Query: 615 QAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672
           +  ++        +        +      F+  + E+  +    N ++++  +A  V+
Sbjct: 666 KGTVNIDLAFSKKKADERKEWLRQYKPGTFLDHRLEEIPYSEFINKELILFSMANNVR 723


>gi|223674696|gb|ACN13044.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 176

 Score =  187 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 4/179 (2%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170
             SYKVSGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TG
Sbjct: 1   NTSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTG 59

Query: 171 TEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           T V F PS + F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI
Sbjct: 60  TTVRFWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRND--REDHFHYEGGI 117

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288
           +AFV YL+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTH
Sbjct: 118 KAFVEYLNKNKTPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 176


>gi|326379128|gb|ADZ57477.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 456

 Score =  187 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 120/454 (26%), Positives = 193/454 (42%), Gaps = 40/454 (8%)

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           +V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G++ 
Sbjct: 1   KVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGLKD 52

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
            +      +  +    I + G    I+I         Y E    F N      GGTHL  
Sbjct: 53  LLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHLGA 108

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351
            R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S++
Sbjct: 109 FRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGSTD 159

Query: 352 V-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD---LTRR 401
           +       R+ V  F+   L  +L ++P  A ++++K+L A   R      R       +
Sbjct: 160 MGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDRAK 219

Query: 402 KGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458
           K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK L
Sbjct: 220 KSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPL 279

Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518
           N        +  ++E   L  AL          +  LRY+  +I TDADVDG HIR LL+
Sbjct: 280 NSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNCVIATDADVDGMHIRLLLI 334

Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578
           TFF +  P +I  G LYI++ PL+ +   K   Y   E+   D +       EI  F   
Sbjct: 335 TFFLQFFPEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKLKPKPEITRF-KG 393

Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
            G IS ++ +NFI + +++D ++ D   + +K  
Sbjct: 394 LGEISPDEFKNFIGETIRLDPVMLDKSTSIEKLL 427



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 16/136 (11%)

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              +L  +    F  +  +     +      +  +    + I         D I  + + 
Sbjct: 328 HIRLLLITFFLQFFPEMIKE--GHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL-KP 384

Query: 733 GISMQRYKGLGEMNASQLW----ETT-LNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787
              + R+KGLGE++  +      ET  L+P       V +  ++  + L    MG     
Sbjct: 385 KPEITRFKGLGEISPDEFKNFIGETIRLDP-------VMLDKSTSIEKLLEFYMGKNTPD 437

Query: 788 RREFIQENSLPSALDI 803
           R+ FI  N L   LD+
Sbjct: 438 RQTFIINN-LKVELDV 452


>gi|164456707|dbj|BAF97846.1| gyrase B subunit [Vibrio nigripulchritudo]
          Length = 235

 Score =  187 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 165/235 (70%), Gaps = 3/235 (1%)

Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194
           + L I R G I+  ++ +G    PL V G   + TGT++ F PS D FS  +F+YD L  
Sbjct: 2   VTLTIHRGGQIHTQTYHHGEPQAPLSVIGDT-DKTGTQIRFWPSEDTFSNVEFHYDILAK 60

Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254
           RLRELSFLNS V I L+D+R  E +     ++GGI+AFV +L+ +K P++Q        R
Sbjct: 61  RLRELSFLNSGVSIKLVDER-EEDKNDHFMFEGGIQAFVEHLNTNKTPIIQKIFHFDSER 119

Query: 255 DN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKD 313
           ++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K   SKK 
Sbjct: 120 EDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKA 179

Query: 314 KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368
           K +  GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L  +L
Sbjct: 180 KAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLQEFL 234


>gi|281429810|gb|ADA70041.1| DNA gyrase subunit B [Erwinia rhapontici]
          Length = 246

 Score =  187 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 120/249 (48%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++  +++G+   PL V+G   + TGT V F PS   F+   +F Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVSGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDGKS--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|259906030|gb|ACW84337.1| gyrase subunit B [Xanthomonas arboricola]
 gi|259906032|gb|ACW84338.1| gyrase subunit B [Xanthomonas arboricola]
 gi|259906034|gb|ACW84339.1| gyrase subunit B [Xanthomonas arboricola]
 gi|259906036|gb|ACW84340.1| gyrase subunit B [Xanthomonas arboricola]
 gi|262233293|gb|ACY38667.1| gyrase B [Xanthomonas arboricola]
 gi|262233295|gb|ACY38668.1| gyrase B [Xanthomonas arboricola]
 gi|262233297|gb|ACY38669.1| gyrase B [Xanthomonas arboricola]
 gi|262233299|gb|ACY38670.1| gyrase B [Xanthomonas arboricola]
 gi|262233301|gb|ACY38671.1| gyrase B [Xanthomonas arboricola]
          Length = 233

 Score =  187 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 7/233 (3%)

Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
             Y+KD+ +L  YL + ++     +    +  I+   L   +      ++ I      +D
Sbjct: 1   ELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYD 60

Query: 610 KTFIEQAVISGVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDI 662
              +   +     + +  Q              + NR      + +  +  + +  ++ +
Sbjct: 61  PALLTALIDLPPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASL 120

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           +  R   G +   VL   +  S   +  R  S  + +       ++       IT     
Sbjct: 121 VAVRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQA 180

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +    ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 181 HAWLLEEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 233


>gi|161339292|gb|ABX64397.1| GyrB [Gordonia amicalis]
          Length = 339

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 136/339 (40%), Positives = 195/339 (57%), Gaps = 35/339 (10%)

Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------------- 216
           P  +IF+    FN +T+  RL+E++FLN  + I+L D+R                     
Sbjct: 1   PDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDEDAPATDV 60

Query: 217 ---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261
                          +P+  T  Y  G+  ++ +L+R K+ +  + I      +   +++
Sbjct: 61  AEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGHEVEI 120

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           AM+WN GY E+V  F N I   +GGTH  G R+ALT  +  Y  +    K+    + GDD
Sbjct: 121 AMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDD 180

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG  +V+S K+ DP+F  QTK KL ++E++  V+   N+ L  W E +P EAKII+KK
Sbjct: 181 IREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKK 240

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441
             D++  R AARRAR++ RRK   DI  LPGKLADC   DP K E+++VEGDSAGGSAK 
Sbjct: 241 AADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKS 300

Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
           GR    QAILPLRGKI+NVE+AR D++L + E+ ++ITA
Sbjct: 301 GRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 339


>gi|158252574|gb|ABW23771.1| DNA gyrase [Pantoea anthophila]
          Length = 247

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 120/250 (48%), Positives = 177/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+ ++PL VTG   + TGT V F PS + F+    F YD L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPESPLTVTGDT-DLTGTRVRFWPSYETFTNVRDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSNEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+P+P+FSSQTK+KLVSS+V+S V+  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPEPKFSSQTKDKLVSSKVKSAVDHQMNELLAEYLLENPADAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|224496240|gb|ACN52501.1| gyrB [Pantoea ananatis]
          Length = 246

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 122/249 (48%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT + F PS D F+   DF YD L  RLRELS
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L  +   + R     Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKHKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAAXAR 246


>gi|73666183|gb|AAZ79768.1| gyrase B [Salmonella enterica subsp. indica]
          Length = 269

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 154/271 (56%), Positives = 203/271 (74%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGG AKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGFAKQGR 269


>gi|73666137|gb|AAZ79745.1| gyrase B [Salmonella enterica subsp. enterica serovar Bredeney]
          Length = 269

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 154/271 (56%), Positives = 204/271 (75%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+++PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVRVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|73666013|gb|AAZ79683.1| gyrase B [Salmonella enterica subsp. diarizonae]
 gi|73666015|gb|AAZ79684.1| gyrase B [Salmonella enterica subsp. arizonae]
 gi|73666017|gb|AAZ79685.1| gyrase B [Salmonella enterica subsp. salamae]
 gi|73666019|gb|AAZ79686.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|73666021|gb|AAZ79687.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|73666023|gb|AAZ79688.1| gyrase B [Salmonella enterica subsp. enterica serovar Bredeney]
 gi|73666025|gb|AAZ79689.1| gyrase B [Salmonella enterica subsp. enterica serovar Bredeney]
 gi|73666027|gb|AAZ79690.1| gyrase B [Salmonella enterica subsp. enterica serovar Derby]
 gi|73666029|gb|AAZ79691.1| gyrase B [Salmonella enterica subsp. enterica serovar Derby]
 gi|73666031|gb|AAZ79692.1| gyrase B [Salmonella enterica subsp. enterica serovar Manhattan]
 gi|73666033|gb|AAZ79693.1| gyrase B [Salmonella enterica subsp. enterica serovar Manhattan]
 gi|73666035|gb|AAZ79694.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|73666037|gb|AAZ79695.1| gyrase B [Salmonella enterica subsp. enterica serovar Brandenburg]
 gi|73666039|gb|AAZ79696.1| gyrase B [Salmonella enterica subsp. enterica serovar Brandenburg]
 gi|73666041|gb|AAZ79697.1| gyrase B [Salmonella enterica subsp. enterica serovar Brandenburg]
 gi|73666043|gb|AAZ79698.1| gyrase B [Salmonella enterica subsp. enterica serovar Bredeney]
 gi|73666045|gb|AAZ79699.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|73666047|gb|AAZ79700.1| gyrase B [Salmonella enterica subsp. enterica serovar Derby]
 gi|73666049|gb|AAZ79701.1| gyrase B [Salmonella enterica subsp. enterica serovar Derby]
 gi|73666051|gb|AAZ79702.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|73666053|gb|AAZ79703.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|73666055|gb|AAZ79704.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|73666057|gb|AAZ79705.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666059|gb|AAZ79706.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666061|gb|AAZ79707.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|73666063|gb|AAZ79708.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|73666065|gb|AAZ79709.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|73666067|gb|AAZ79710.1| gyrase B [Salmonella enterica subsp. enterica serovar Braenderup]
 gi|73666071|gb|AAZ79712.1| gyrase B [Salmonella enterica subsp. enterica serovar Dublin]
 gi|73666073|gb|AAZ79713.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
 gi|73666075|gb|AAZ79714.1| gyrase B [Salmonella enterica subsp. enterica serovar Livingstone]
 gi|73666081|gb|AAZ79717.1| gyrase B [Salmonella enterica subsp. enterica serovar Infantis]
 gi|73666083|gb|AAZ79718.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666085|gb|AAZ79719.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666087|gb|AAZ79720.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson]
 gi|73666089|gb|AAZ79721.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
 gi|73666091|gb|AAZ79722.1| gyrase B [Salmonella enterica subsp. enterica serovar Livingstone]
 gi|73666093|gb|AAZ79723.1| gyrase B [Salmonella enterica subsp. enterica serovar Anatum]
 gi|73666095|gb|AAZ79724.1| gyrase B [Salmonella enterica subsp. enterica serovar London]
 gi|73666099|gb|AAZ79726.1| gyrase B [Salmonella enterica subsp. enterica serovar Heidelberg]
 gi|73666101|gb|AAZ79727.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson]
 gi|73666103|gb|AAZ79728.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|73666105|gb|AAZ79729.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
 gi|73666107|gb|AAZ79730.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
 gi|73666109|gb|AAZ79731.1| gyrase B [Salmonella enterica subsp. enterica serovar Cerro]
 gi|73666111|gb|AAZ79732.1| gyrase B [Salmonella enterica subsp. enterica serovar Cerro]
 gi|73666113|gb|AAZ79733.1| gyrase B [Salmonella enterica subsp. enterica serovar Dublin]
 gi|73666115|gb|AAZ79734.1| gyrase B [Salmonella enterica subsp. enterica serovar Heidelberg]
 gi|73666117|gb|AAZ79735.1| gyrase B [Salmonella enterica subsp. enterica serovar Infantis]
 gi|73666119|gb|AAZ79736.1| gyrase B [Salmonella enterica subsp. enterica serovar Infantis]
 gi|73666121|gb|AAZ79737.1| gyrase B [Salmonella enterica subsp. enterica serovar Livingstone]
 gi|73666123|gb|AAZ79738.1| gyrase B [Salmonella enterica subsp. enterica serovar Montevideo]
 gi|73666125|gb|AAZ79739.1| gyrase B [Salmonella enterica subsp. enterica serovar Montevideo]
 gi|73666127|gb|AAZ79740.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
 gi|73666129|gb|AAZ79741.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
 gi|73666131|gb|AAZ79742.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson]
 gi|73666133|gb|AAZ79743.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666135|gb|AAZ79744.1| gyrase B [Salmonella enterica subsp. enterica serovar Mbandaka]
 gi|73666141|gb|AAZ79747.1| gyrase B [Salmonella enterica subsp. enterica serovar Dublin]
 gi|73666145|gb|AAZ79749.1| gyrase B [Salmonella enterica subsp. enterica serovar Braenderup]
 gi|73666151|gb|AAZ79752.1| gyrase B [Salmonella enterica subsp. enterica serovar Dublin]
 gi|73666153|gb|AAZ79753.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|73666155|gb|AAZ79754.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|73666161|gb|AAZ79757.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
 gi|73666163|gb|AAZ79758.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson]
 gi|73666165|gb|AAZ79759.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666167|gb|AAZ79760.1| gyrase B [Salmonella enterica subsp. salamae]
 gi|73666169|gb|AAZ79761.1| gyrase B [Salmonella enterica subsp. arizonae]
 gi|73666171|gb|AAZ79762.1| gyrase B [Salmonella enterica subsp. arizonae]
 gi|73666173|gb|AAZ79763.1| gyrase B [Salmonella enterica subsp. diarizonae]
 gi|73666175|gb|AAZ79764.1| gyrase B [Salmonella enterica subsp. diarizonae]
 gi|73666177|gb|AAZ79765.1| gyrase B [Salmonella enterica subsp. houtenae]
 gi|73666179|gb|AAZ79766.1| gyrase B [Salmonella enterica subsp. houtenae]
 gi|73666181|gb|AAZ79767.1| gyrase B [Salmonella enterica subsp. indica]
 gi|84380938|gb|AAZ79711.1| gyrase B [Salmonella enterica subsp. enterica serovar Mbandaka]
 gi|84380940|gb|AAZ79715.1| gyrase B [Salmonella enterica subsp. enterica serovar Anatum]
          Length = 269

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 155/271 (57%), Positives = 204/271 (75%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|255964662|gb|ACU44648.1| gyrase subunit B [Xanthomonas perforans]
 gi|261748907|gb|ACX94093.1| gyrase B segment [Xanthomonas vesicatoria]
          Length = 233

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 7/233 (3%)

Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
             Y+KD+ +L  YL + ++     +    +  I+   L   +      ++ I      +D
Sbjct: 1   ELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLYTSANEAIARNAHRYD 60

Query: 610 KTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDI 662
              +   +     +      E D    +     + NR      + +  +  +  N  + +
Sbjct: 61  PALLTALIDLPPLDVAQLQAEGDVHPTLDALQAVLNRGTLGTARYQLRFDPATENIAATL 120

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           +  R   G +   VL   +  S   +  R  S  + +       ++       IT     
Sbjct: 121 VAIRRHMGEEFTQVLPMGAFESGELRPLRDVSLALNDLIREGAQIVRGNKTHAITSFAQA 180

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +    ++G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 181 HAWLLEEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 233


>gi|281371839|gb|ADA63664.1| gyrase [Pseudomonas fluorescens]
          Length = 235

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 115/236 (48%), Positives = 164/236 (69%), Gaps = 4/236 (1%)

Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           SVVNALS  L+L I+R G ++E  + +G+    L   G   + TGTEV F  S++ F+  
Sbjct: 1   SVVNALSEELRLTIRRAGQVWEQIYRHGVPQFALRAVGET-DGTGTEVHFKASAETFTNI 59

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F++D L  RLRELSFLNS V I L D+RS +       Y+GG++AFV YL+ +K  + +
Sbjct: 60  HFSWDILAKRLRELSFLNSGVGILLRDERSGKE--EMFKYEGGLKAFVEYLNTNKTIVNE 117

Query: 246 SPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
                IQ   D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+
Sbjct: 118 VFHFNIQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNYI 177

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
           E+   +KK K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +
Sbjct: 178 EQEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 233


>gi|40019249|emb|CAE92288.1| DNA gyrase subunit B [Haemophilus parainfluenzae]
          Length = 84

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 67/84 (79%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  +GLHHM++EV+DNAIDE+L GY   I VT++ D S +V D+GRGIP D+H EEG+
Sbjct: 1   DTDDGTGLHHMVFEVVDNAIDEALAGYCSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVS 117
           SAAE IMT LHAGGKF+  SYKVS
Sbjct: 61  SAAEAIMTVLHAGGKFDDNSYKVS 84


>gi|224496206|gb|ACN52484.1| gyrB [Enterobacter cancerogenus]
          Length = 246

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 123/245 (50%), Positives = 169/245 (68%), Gaps = 4/245 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG I+   + +G+   PL VTG   + TGT V F PS + F+   +F YD L  RLRELS
Sbjct: 1   EGKIHRQVYTHGVPQAPLAVTGDT-DKTGTLVRFWPSHETFTNVTEFEYDILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLKDKRDGKE--DHFHYEGGIRAFVEYLNKNKTPIHPNIFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+ R + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMARSLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVG 237

Query: 381 KVLDA 385
           K++DA
Sbjct: 238 KIIDA 242


>gi|315936454|gb|ADU55855.1| DNA gyrase [Erwinia tasmaniensis]
          Length = 247

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 122/250 (48%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRELS
Sbjct: 1   EGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDGKT--DHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ L+ +L EHP +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEHPGDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|45593186|gb|AAS68189.1| gyrase B [Geobacter sulfurreducens PCA]
          Length = 237

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 150/237 (63%), Gaps = 3/237 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            +Y  S+  G    PL V G      GT++TFLP   IF   +F++D L  RLREL+FLN
Sbjct: 1   KVYRQSYACGDPQTPLEVMGETK-KRGTKITFLPDDTIFETTEFSFDVLSQRLRELAFLN 59

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           + V+I++ D+R  +       Y+GGI +FV YL+R++  L   PI  +G +  + +++A+
Sbjct: 60  AGVRITITDEREEK--HHDFHYEGGIVSFVEYLNRNRTALHPKPIYFKGEKAGVEMEVAL 117

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           ++ND Y E V  F NNI   +GGTHL G R+ALTR + +Y   +   KK+K ++ G+D R
Sbjct: 118 QYNDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMNTYAAANELLKKEKVAISGEDLR 177

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           EG T+V+S+K+P P+F  QTK KL +SEV+  VES +N+ L+ +LEE+P  AK I+ 
Sbjct: 178 EGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMNEKLAVFLEENPKIAKDIIG 234


>gi|183986198|gb|AAI66287.1| Unknown (protein for MGC:185751) [Xenopus (Silurana) tropicalis]
          Length = 240

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 25/188 (13%)

Query: 15  IQILKGLDAVKKRPSMYIGDTDGES---------------------GLHHMIYEVLDNAI 53
            Q    L+ +  RP  YIG  +  +                     GL+ +  E+L NA 
Sbjct: 31  YQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDEGLNCRDVTFVPGLYKIFDEILVNAA 90

Query: 54  DESLEGYA-DIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111
           D          I +T+N +  + +V +NG+GIP   HK E +    +I  +L     ++ 
Sbjct: 91  DNKQRDPTMSCIKITINPESNTVSVWNNGKGIPVVEHKVEKVFVPALIFGQLLTSSNYDD 150

Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRI-KRE-GNIYEMSFINGILDNPLVVTGSAGNDT 169
              KV+GG +G G  + N  S+   +    RE   +++ ++ + + D           + 
Sbjct: 151 DQKKVTGGRNGYGAKLCNIFSNKFTVETACREYKKVFKQTWTDNMSDAADAKIKPFDGED 210

Query: 170 GTEVTFLP 177
            T +TF P
Sbjct: 211 YTCITFQP 218


>gi|324962658|gb|ADY62431.1| gyrase subunit B [Frankia sp. BMG5.12]
          Length = 417

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/148 (47%), Positives = 92/148 (62%), Gaps = 1/148 (0%)

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
           TL  DG   V+DNGRGIP   H  + I   E+++T LHAGGKF+ KSY VSGGLHGVGVS
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGKSYAVSGGLHGVGVS 60

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186
           VVNALS+ L + I+REG+ +   +       PL  T      TGT +TF     IF    
Sbjct: 61  VVNALSTRLDVAIEREGHSWFQPYAGSRPAAPLAKT-GTSKKTGTTITFWADPTIFETTT 119

Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR 214
           + Y+TL  RL+E++FLN  + I+L D+R
Sbjct: 120 YKYETLFRRLQEMAFLNKGLSITLRDER 147



 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 118/205 (57%), Gaps = 7/205 (3%)

Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280
           +T  Y  G+  FV +L+  K+ + +S I ++     I  +LAM+WN GY+E+V  F N I
Sbjct: 211 VTFKYDNGLVDFVGHLNATKEAIHRSVISLEAQGTGIEAELAMQWNGGYNESVYTFANTI 270

Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK-------RSVIGDDCREGFTSVLSIK 333
              +GGTH  G R+ALT  + +Y +     K  K         + GDD REG T+++S+K
Sbjct: 271 NTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPVKAGSKNSDERLSGDDIREGLTAIISVK 330

Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393
           +  P+F  QTK KL ++E +  V+      L  W E +  EA+ IV K LDA   R AAR
Sbjct: 331 LAQPQFEGQTKTKLGNTEAKKFVQEMCYAALKDWFEVNRTEARAIVSKALDAQRARIAAR 390

Query: 394 RARDLTRRKGVLDIASLPGKLADCS 418
           +ARDLTRRKG+L    LPGKL+DC 
Sbjct: 391 QARDLTRRKGLLGGTGLPGKLSDCQ 415


>gi|33087765|gb|AAP93013.1| DNA gyrase subunit B [Yersinia rohdei]
          Length = 184

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 95/187 (50%), Positives = 127/187 (67%), Gaps = 4/187 (2%)

Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176
           SGGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRFW 59

Query: 177 PSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235
           PS   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV Y
Sbjct: 60  PSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE--DHFHYEGGIKAFVEY 117

Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295
           L+++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A
Sbjct: 118 LNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTA 177

Query: 296 LTRQITS 302
           +TR + S
Sbjct: 178 MTRTLNS 184


>gi|73666185|gb|AAZ79769.1| gyrase B [Salmonella bongori]
          Length = 269

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 155/271 (57%), Positives = 204/271 (75%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|315936456|gb|ADU55856.1| DNA gyrase [Erwinia amylovora]
 gi|315936458|gb|ADU55857.1| DNA gyrase [Erwinia pyrifoliae DSM 12163]
          Length = 247

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 123/250 (49%), Positives = 174/250 (69%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRELS
Sbjct: 1   EGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L EHP +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLEHPGDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|84380942|gb|AAZ79716.1| gyrase B [Salmonella enterica subsp. enterica serovar London]
          Length = 269

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 155/271 (57%), Positives = 204/271 (75%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSHETFTNVTEFEYEILGKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|218937741|gb|ACL13030.1| DNA gyrase subunit B [Lactobacillus acetotolerans]
          Length = 279

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 126/279 (45%), Positives = 186/279 (66%)

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                F+   L+ R+REL+FLN  ++++  DKR          Y+GGI+ +VS+L+R+ K
Sbjct: 1   TETTSFDDKVLKTRIRELAFLNKGLKLTFTDKRKDSAETDVYHYEGGIKEYVSFLNRNSK 60

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++G+ + I++++A+++  GY   ++ F NNI   +GGTH +G ++ALTR + 
Sbjct: 61  VLFDEPIYVEGNYNGINVEVALQYTTGYKTTLMTFANNIHTYEGGTHEAGFKTALTRVVN 120

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+V+S+K PDP+F  QTK KL +S+ R+ V+   +
Sbjct: 121 DYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPDPQFEGQTKTKLGNSDARTAVDKAFS 180

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 181 ETFSHFLMENPKVGRKIVEKSQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 240

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           P  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNV
Sbjct: 241 PNISELFVVEGNSAGGSAKQGRSRLTQAILPIRGKILNV 279


>gi|73666097|gb|AAZ79725.1| gyrase B [Salmonella enterica subsp. enterica serovar Mbandaka]
          Length = 269

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 154/271 (56%), Positives = 204/271 (75%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR+++RRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMSRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|164456659|dbj|BAF97822.1| gyrase B subunit [Vibrio diazotrophicus]
          Length = 219

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 112/220 (50%), Positives = 156/220 (70%), Gaps = 3/220 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188
           NALS  + L I R G+I+  ++ +G+   PL V G     TGT V F PS+D F+  +F+
Sbjct: 1   NALSEKVLLTIYRGGHIHTQTYRHGVPQAPLSVVGDTE-KTGTTVRFWPSADTFTNIEFH 59

Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248
           YD L  RLRELSFLNS V I LID+R  E ++    Y+GGI+AFV++L+R+K P+ +   
Sbjct: 60  YDILAKRLRELSFLNSGVSIKLIDER-EEDKQDHFMYEGGIQAFVTHLNRNKTPIHEKVF 118

Query: 249 RIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
                R++ IS+++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R+ALTR + +Y++K 
Sbjct: 119 HFNSEREDGISVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMDKE 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
             SKK K +  GDD REG T+V+S+K+PDP+FSSQTK+KL
Sbjct: 179 GYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 218


>gi|255964664|gb|ACU44649.1| gyrase subunit B [Xanthomonas perforans]
 gi|256033062|gb|ACU57154.1| gyrase [Xanthomonas perforans]
 gi|261748911|gb|ACX94095.1| gyrase B segment [Xanthomonas perforans]
 gi|261748913|gb|ACX94096.1| gyrase B segment [Xanthomonas euvesicatoria]
          Length = 233

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 7/233 (3%)

Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
             Y+KD+ +L  YL + ++     +    +  I+   L   +      ++ I      +D
Sbjct: 1   ELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYD 60

Query: 610 KTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS--DI 662
              +   +     +      E DQ   +     + NR      + +  +     N+   +
Sbjct: 61  PALLTALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPGSENAPATL 120

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           +  R   G +   VL   +  S   +  R  S  + +       ++       IT     
Sbjct: 121 VAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKSHPITSFAQA 180

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 181 HAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 233


>gi|307592558|gb|ADN65367.1| DNA gyrase subunit B [Chryseobacterium soldanellicola]
          Length = 237

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 120/229 (52%), Positives = 165/229 (72%), Gaps = 4/229 (1%)

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEV   V+  V + LS +LEE+P EAKIIV+KV+ A+  R AA++AR++ +RK  
Sbjct: 1   TKLGNSEVSGAVDKIVGEMLSNFLEENPNEAKIIVQKVVLAAKARQAAKKAREMVQRKSP 60

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  + LPGKL+DCS +DP +SELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++ 
Sbjct: 61  MGGSGLPGKLSDCSSKDPAESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 120

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  +G +      ++ KLRYHK++IMTDAD+DG+HI TL+LTF
Sbjct: 121 LHKVYDNEEIKNIYTALGVSVGTEEDSKALNMAKLRYHKVVIMTDADIDGSHISTLILTF 180

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FFR M  LI NG++YI +PPLY + +G    Y  +E+  E++ ++ S  
Sbjct: 181 FFRFMKELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLDMSPD 229


>gi|33087769|gb|AAP93015.1| DNA gyrase subunit B [Yersinia rohdei]
          Length = 187

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 96/190 (50%), Positives = 130/190 (68%), Gaps = 4/190 (2%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRFWP 59

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL
Sbjct: 60  SFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE--DHFHYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+
Sbjct: 118 NKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 177

Query: 297 TRQITSYVEK 306
           TR + SY++K
Sbjct: 178 TRTLNSYMDK 187


>gi|307592550|gb|ADN65363.1| DNA gyrase subunit B [Chryseobacterium haifense]
          Length = 240

 Score =  185 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 122/229 (53%), Positives = 163/229 (71%), Gaps = 4/229 (1%)

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEV   V+  V + L+ +LEE+P EAKIIV+KV+ A+  R AA++AR+L +RK  
Sbjct: 1   TKLGNSEVSGAVDKIVGEMLTNFLEENPNEAKIIVQKVVLAAKARQAAKKARELVQRKSP 60

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  + LPGKL+DCS +DP+ SELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++ 
Sbjct: 61  MGGSGLPGKLSDCSSKDPEISELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 120

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  +G +      +I+KLRYHKI+IMTDAD+DG+HI TL+LTF
Sbjct: 121 LHKVYDNEEIKNIYTALGVSVGTEEDSKALNISKLRYHKIVIMTDADIDGSHISTLILTF 180

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FFR M  LI NG++YI +PPLY + +G    Y  +E+  ED     +  
Sbjct: 181 FFRYMKELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREDLTSEMAPD 229


>gi|224496336|gb|ACN52549.1| gyrB [Erwinia amylovora]
 gi|224496338|gb|ACN52550.1| gyrB [Erwinia pyrifoliae DSM 12163]
          Length = 246

 Score =  185 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 173/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELS 200
           EG +++  +++G+    L VTG   + TGT V F PS   F+   +F Y+ L  RLRELS
Sbjct: 1   EGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L EHP +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLEHPGDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|73666159|gb|AAZ79756.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
          Length = 269

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 154/271 (56%), Positives = 202/271 (74%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D   +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGTGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELCLVEGDSAGGSAKQGR 269


>gi|302122532|gb|ADK92935.1| DNA gyrase subunit B [Geobacillus uzenensis]
 gi|302122534|gb|ADK92936.1| DNA gyrase subunit B [Geobacillus uzenensis]
          Length = 252

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 126/248 (50%), Positives = 175/248 (70%)

Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275
            + R+    Y+GGI ++V +L+R ++ L + PI I G RD I++++A+++NDGY  N+  
Sbjct: 5   VDNRKNEYVYEGGIRSYVRHLNRTREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYS 64

Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
           F NNI   +GGTH SG + ALTR I  Y  K    K +  ++ G+D REG T+++SIK P
Sbjct: 65  FVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHP 124

Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395
            P+F  QTK KL +S+ R+V ++  ++    +L EHP  A+ IV+K + A+  R AA++A
Sbjct: 125 SPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLEHPTIARKIVEKGMMAARARLAAKKA 184

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
           R+LTRRK  L+I++LPGKLADCS RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRG
Sbjct: 185 RELTRRKSALEISNLPGKLADCSSRDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRG 244

Query: 456 KILNVERA 463
           KILNVE+A
Sbjct: 245 KILNVEKA 252


>gi|281331688|emb|CAZ40038.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 239

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 111/227 (48%), Positives = 145/227 (63%), Gaps = 3/227 (1%)

Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181
           GVGVSVVNALS  L + + + G  Y   F NG     L          GT V F PS+  
Sbjct: 3   GVGVSVVNALSQKLLVDVFQNGFHYFKEFSNGAAVTALAKL-ETTTKRGTTVRFWPSTVA 61

Query: 182 FS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
           F    +F+YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L + K
Sbjct: 62  FHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQLK 120

Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
            PL  + I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR +
Sbjct: 121 TPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVL 180

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
            +Y+E++  +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKL
Sbjct: 181 NNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKL 227


>gi|194395144|gb|ACF60206.1| gyrase B subunit [Enterobacter sp. ECC_135]
          Length = 139

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/142 (58%), Positives = 98/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+   PL VTG   + TGT V F PS + F+   +F YD L  RLRELSFLNS V I 
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LKDKRDGKE--DHFHYEGGIKA 139


>gi|76664780|emb|CAJ17828.1| DNA gyrase beta subunit [Candidatus Phytoplasma solani]
          Length = 237

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 116/239 (48%), Positives = 161/239 (67%), Gaps = 5/239 (2%)

Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337
           NNI   +GGTH  G + AL R ++ Y  K F   K   S++ +D  EG T+++S+K  +P
Sbjct: 1   NNIHTHEGGTHEEGFKLALNRNLSKYA-KEFNLLKKDESLLSEDILEGITAIISLKYQNP 59

Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397
           +F  QTK KL ++EVRS++     + L  +L E+P +AK I+ K L ++  R +A+RAR+
Sbjct: 60  QFEGQTKAKLGNTEVRSIISQIFGEFLERFLVENPTDAKKIIDKCLLSANARLSAKRARE 119

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           + R K  LD      KLADC  +DP+ SEL++ EGDSAGGSAKQGR    QAILPLRGK+
Sbjct: 120 IARNKP-LDSLGFASKLADCRSKDPQISELYIAEGDSAGGSAKQGRDSRFQAILPLRGKV 178

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGI---GQDSFDINKLRYHKIIIMTDADVDGAHI 513
           LNVE+ +  K+L+++EI +LI A+G GI        +++K+RYHKIIIMTDADVDGAHI
Sbjct: 179 LNVEKTQSAKILTNKEIKSLIQAIGIGINIGKSKELNLDKIRYHKIIIMTDADVDGAHI 237


>gi|73666143|gb|AAZ79748.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
          Length = 269

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 154/271 (56%), Positives = 203/271 (74%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD  EG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAHEGLIAVVSVKVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|73666147|gb|AAZ79750.1| gyrase B [Salmonella enterica subsp. enterica serovar Braenderup]
          Length = 269

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 154/271 (56%), Positives = 203/271 (74%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+  FTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYRFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|194395098|gb|ACF60183.1| gyrase B subunit [Enterobacter sp. ECC_119]
 gi|194395106|gb|ACF60187.1| gyrase B subunit [Enterobacter sp. ECC_120]
 gi|194395156|gb|ACF60212.1| gyrase B subunit [Enterobacter sp. ECC_150]
          Length = 139

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 83/142 (58%), Positives = 98/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+   PL VTG   + TGT V F PS + F+   +F YD L  RLRELSFLNS V I 
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LRDKRDGKE--DHFHYEGGIKA 139


>gi|218937747|gb|ACL13033.1| DNA gyrase subunit B [Lactobacillus amylovorus]
          Length = 279

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 119/279 (42%), Positives = 184/279 (65%)

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                F+   L++R+REL+FLN  + ++  DKR          ++GGI+ +V++L++ ++
Sbjct: 1   TETTVFDDKILKNRIRELAFLNKGLTLTFTDKRKDSAETDVYKFEGGIKEYVAFLNKDQE 60

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 61  VLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 120

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+V+S+K P+P+F  QTK KL +S+ R+ V+   +
Sbjct: 121 DYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTKLGNSDARTAVDKSFS 180

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 181 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 240

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           P  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNV
Sbjct: 241 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNV 279


>gi|51949508|gb|AAU14675.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949552|gb|AAU14697.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949582|gb|AAU14712.1| DNA gyrase subunit B [Pseudomonas viridiflava]
          Length = 246

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 115/248 (46%), Positives = 172/248 (69%), Gaps = 3/248 (1%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D F    F++D L  R+
Sbjct: 2   LTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKPSADTFKNIHFSWDILAKRI 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ +         D 
Sbjct: 61  RELSFLNSGVGIMLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVNEVFHFNVQRDDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+E+   +KK K +
Sbjct: 119 VGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK
Sbjct: 179 TTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAK 238

Query: 377 IIVKKVLD 384
            +V K++D
Sbjct: 239 AVVGKMID 246


>gi|12641857|dbj|BAB21547.1| type II DNA topoisomerase [Porphyra haitanensis]
          Length = 383

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 151/405 (37%), Gaps = 33/405 (8%)

Query: 80  GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139
           G GIP  +H +EG+   E+I   L     ++    KV GG +G G  + N  S+   +  
Sbjct: 1   GAGIPVAMHAKEGVYVPELIFGHLLTSSNYDDGERKVVGGRNGYGAKLANIFSTRFVVET 60

Query: 140 KRE--GNIYEMSFINGILD--NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD---TL 192
                G+ Y   F   ++D   P +   +   D  T +TF P    F +   + D    L
Sbjct: 61  ADAASGHTYTHVFRRNMMDRGAPAIRPSAKPRDAWTRITFEPDLAKFGMGRLDADAVAIL 120

Query: 193 QHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252
           Q R+ +++ +   + + L   +               +A                 RI  
Sbjct: 121 QMRVVDMAGVVPGIGVYLNGVKLKVHSFKQYVDLHLADA-------------PDAPRIHD 167

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
           +      ++ +  +DG       F N+I    GGTH+  +   L  +I  ++ K      
Sbjct: 168 APAGGRWEVVVSLSDGQLTQT-SFVNSIATTKGGTHVGHVADQLVGRIQEHIAKK----H 222

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
               V     +   +  L   + +P F S TKE L S       +    D ++  L +  
Sbjct: 223 KALKVKPFQIKSQLSIFLKCLVENPAFDSHTKEMLTSRPSSFGSKWTCPDRVAKELLKSG 282

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432
                +V+ VL  +  R     A+    ++  +              RD  +  L L EG
Sbjct: 283 -----VVESVLSLAASRQVKELAKTDGGKRARVSGIPKLDDANLAGTRDSARCTLILTEG 337

Query: 433 DSAGGSAKQGRS---RENQAILPLRGKILNVERARFDKMLSSQEI 474
           DSA   A  G S   R+   + PLRGK+LNV  A   +++ + EI
Sbjct: 338 DSAKALAISGLSVLGRDLYGVFPLRGKLLNVREATHKQIMDNAEI 382


>gi|307592554|gb|ADN65365.1| DNA gyrase subunit B [Chryseobacterium sp. CTM]
          Length = 237

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 116/229 (50%), Positives = 165/229 (72%), Gaps = 4/229 (1%)

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEV   V+  V + L+ +LEE+P EAK+IV+KV+ A+  R AA++AR++ +RK  
Sbjct: 1   TKLGNSEVSGAVDKIVGEMLTNFLEENPNEAKLIVQKVVLAAKARQAAKKAREMVQRKSP 60

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  + LPGKL+DCS + P++SELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++ 
Sbjct: 61  MGGSGLPGKLSDCSSKSPEESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 120

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  +G +      ++ KLRYHK++IMTDAD+DG+HI TL+LTF
Sbjct: 121 LHKVYDNEEIKNIYTALGVSVGTEEDSKALNMAKLRYHKVVIMTDADIDGSHISTLILTF 180

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FFR M  LI NG++YI +PPLY + +G    +  +E+  E++ ++ S  
Sbjct: 181 FFRYMKELIENGYIYIAQPPLYTLKKGNKKAHAHNEKEREEFTLDMSPD 229


>gi|210062236|gb|ACJ06167.1| GyrB [Aeromonas media]
          Length = 281

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 133/269 (49%), Positives = 183/269 (68%), Gaps = 3/269 (1%)

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
           +YE ++  G    PL   G +   TGTEV F PS  IF+   ++Y+ L  RLRELSFLNS
Sbjct: 1   VYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNS 59

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            V I L+D+R  + RE    Y+GGI+AFV YL+++K P+          +D I +++AM+
Sbjct: 60  GVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGIGVEVAMQ 117

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + SY++K   SKK K +  GDD RE
Sbjct: 118 WNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVRE 177

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384
           G  +V+S+K+PDP+FSSQTK+KLVSSEV++ VE  + + L+ +L E+P +AKI+V K++D
Sbjct: 178 GLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIID 237

Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGK 413
           A+  R+AAR+AR+LTRR+G       P  
Sbjct: 238 AARAREAARKARELTRRRGRWTSPVCPAS 266


>gi|51949496|gb|AAU14669.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949498|gb|AAU14670.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949500|gb|AAU14671.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949502|gb|AAU14672.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949504|gb|AAU14673.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949506|gb|AAU14674.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949520|gb|AAU14681.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949524|gb|AAU14683.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949526|gb|AAU14684.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949528|gb|AAU14685.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949530|gb|AAU14686.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949536|gb|AAU14689.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949540|gb|AAU14691.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949542|gb|AAU14692.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949544|gb|AAU14693.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949546|gb|AAU14694.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949548|gb|AAU14695.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949554|gb|AAU14698.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949556|gb|AAU14699.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949558|gb|AAU14700.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949560|gb|AAU14701.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949562|gb|AAU14702.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949566|gb|AAU14704.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949576|gb|AAU14709.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949578|gb|AAU14710.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949608|gb|AAU14725.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949610|gb|AAU14726.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949618|gb|AAU14730.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949622|gb|AAU14732.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949626|gb|AAU14734.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949634|gb|AAU14738.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949636|gb|AAU14739.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949638|gb|AAU14740.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|51949642|gb|AAU14742.1| DNA gyrase subunit B [Pseudomonas viridiflava]
          Length = 246

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 115/248 (46%), Positives = 172/248 (69%), Gaps = 3/248 (1%)

Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196
           L ++R G I+E ++++G+   P+ + G + + TGT++ F PS+D F    F++D L  R+
Sbjct: 2   LTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSADTFKNIHFSWDILAKRI 60

Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256
           RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K P+ +         D 
Sbjct: 61  RELSFLNSGVGIMLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVNEVFHFNVQRDDG 118

Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316
           + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+E+   +KK K +
Sbjct: 119 VGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVA 178

Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376
             GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L E+P EAK
Sbjct: 179 TTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAK 238

Query: 377 IIVKKVLD 384
            +V K++D
Sbjct: 239 AVVGKMID 246


>gi|161089478|gb|ABX57687.1| gyrase b [Burkholderia andropogonis]
 gi|161089480|gb|ABX57688.1| gyrase b [Burkholderia andropogonis]
 gi|161089482|gb|ABX57689.1| gyrase b [Burkholderia andropogonis]
 gi|161089484|gb|ABX57690.1| gyrase b [Burkholderia andropogonis]
 gi|161089486|gb|ABX57691.1| gyrase b [Burkholderia andropogonis]
 gi|161089488|gb|ABX57692.1| gyrase b [Burkholderia andropogonis]
 gi|161089490|gb|ABX57693.1| gyrase b [Burkholderia andropogonis]
 gi|161089492|gb|ABX57694.1| gyrase b [Burkholderia andropogonis]
 gi|161089494|gb|ABX57695.1| gyrase b [Burkholderia andropogonis]
 gi|161089496|gb|ABX57696.1| gyrase b [Burkholderia andropogonis]
 gi|161089498|gb|ABX57697.1| gyrase b [Burkholderia andropogonis]
 gi|161089500|gb|ABX57698.1| gyrase b [Burkholderia andropogonis]
 gi|161089502|gb|ABX57699.1| gyrase b [Burkholderia andropogonis]
          Length = 234

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 110/236 (46%), Positives = 159/236 (67%), Gaps = 15/236 (6%)

Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGT 171
           GVS VNALS WL+L ++R+G  + + F  G++             +P+ V G A +  GT
Sbjct: 1   GVSCVNALSKWLRLTVRRDGKKHFLEFNRGVVINRTLETRDGVEVSPIPVVGDAEH-NGT 59

Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231
           EV F+   DIF   DF+YD L  R+RELSFLN+ V+I L DKRS +  +      GG++ 
Sbjct: 60  EVHFMADEDIFGNVDFHYDILSKRIRELSFLNNGVRIRLQDKRSGKEDDYAF--AGGVKG 117

Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
           FV Y++R K+ L  +     G +DN++++++M+WND ++ENVLCFTNNIPQ+DGGTHL+G
Sbjct: 118 FVEYINRAKQVLHPTIFHAVGEKDNVTVEVSMQWNDSFNENVLCFTNNIPQRDGGTHLTG 177

Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347
           LR+A+TR +  Y+ ++  +KK K    GDD REG + VLS+K+P+P+FSSQTK+KL
Sbjct: 178 LRAAMTRVLNKYIVETDAAKKAKIETSGDDMREGLSCVLSVKVPEPKFSSQTKDKL 233


>gi|73666149|gb|AAZ79751.1| gyrase B [Salmonella enterica subsp. enterica serovar Brandenburg]
          Length = 269

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 153/271 (56%), Positives = 202/271 (74%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F P+ + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPNHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +  I + +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKGGIGVGVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|194395140|gb|ACF60204.1| gyrase B subunit [Enterobacter sp. ECC_62]
          Length = 139

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 83/142 (58%), Positives = 98/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+   PL VTG   + TGT V F PS + F+   +F YD L  RLRELSFLNS V I 
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LRDKRDGKE--DHFHYEGGIKA 139


>gi|164456755|dbj|BAF97870.1| gyrase B subunit [Vibrio penaeicida]
          Length = 224

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 116/226 (51%), Positives = 160/226 (70%), Gaps = 3/226 (1%)

Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189
           ALS  + L I+R G I+  ++ +G    PL V G    +TGTE+ F PS + F+  +F+Y
Sbjct: 1   ALSKQVTLTIQRGGEIHTQTYHHGEPQAPLAVIGKTE-NTGTEIRFWPSEETFTNIEFHY 59

Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249
           D L  RLRELSFLNS V I LID+R  E       ++GGI+AFV +L+ +K P++Q    
Sbjct: 60  DILAKRLRELSFLNSGVSIKLIDEREEEKM-DHFMFEGGIQAFVEHLNTNKTPIIQKIFH 118

Query: 250 IQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308
               R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K  
Sbjct: 119 FDFEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEG 178

Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354
            SKK K S  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S
Sbjct: 179 FSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKS 224


>gi|261748909|gb|ACX94094.1| gyrase B segment [Xanthomonas gardneri]
          Length = 233

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 7/233 (3%)

Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609
             Y+KD+ +L  YL + ++     +    +  I+   L   +      ++ I      +D
Sbjct: 1   ELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTGANEAIARNAHRYD 60

Query: 610 KTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD--I 662
              +   +     +      E DQ   +     + NR      + +  +  + +++   +
Sbjct: 61  PALMTALIDLPPLDVAKLQAEGDQHPTLDKLQAVLNRGTLGTARYQLRFDPATDSTSATL 120

Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722
           +  R   G +   VL   +  S   +  R  +  ++        ++       IT     
Sbjct: 121 VAVRKHMGEEFTQVLPMGAFESGELRPLREVALALDGLVREGAQIVRGNKTHPITSFAQA 180

Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
              +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 181 HAWLLEEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 233


>gi|33087741|gb|AAP93001.1| DNA gyrase subunit B [Yersinia kristensenii]
          Length = 183

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 96/186 (51%), Positives = 125/186 (67%), Gaps = 4/186 (2%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWP 59

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S   F +  +F Y+ L  RLRELSFLNS V I L DKR+   RE    Y+GGI AFV YL
Sbjct: 60  SFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
            ++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+
Sbjct: 118 SKNKNPIHPKVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 177

Query: 297 TRQITS 302
           TR + S
Sbjct: 178 TRTLNS 183


>gi|4996782|dbj|BAA78436.1| subunit B protein of DNA gyrase [bacterium rJ10]
          Length = 220

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 106/222 (47%), Positives = 142/222 (63%), Gaps = 26/222 (11%)

Query: 106 GGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL---------- 155
           GGKF+Q SYKVSGGLHGVGVS VNALS WL+L ++R+G  +++ F  G +          
Sbjct: 1   GGKFDQNSYKVSGGLHGVGVSCVNALSRWLRLTVRRDGRAHQIEFARGFVQNRLVETVDG 60

Query: 156 --DNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLID 212
              +P+ VTG    + GT V FLP ++IF    DF+YDTL  RLRELSFLN+ V+I LID
Sbjct: 61  FEVSPMRVTGPT-QERGTSVRFLPDTEIFGDNHDFHYDTLAKRLRELSFLNNGVRIRLID 119

Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLA 262
           +R+ +         GG+  FV ++   K+ L  +P    G+R            I +++A
Sbjct: 120 ERTGKE--DDFSGAGGVLGFVKFISTGKRVLHPTPFHAAGTRPAETYGGIPGTEIGVEVA 177

Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
           M+WNDGY+E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+
Sbjct: 178 MQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYI 219


>gi|307592556|gb|ADN65366.1| DNA gyrase subunit B [Chryseobacterium shigense]
          Length = 237

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 118/229 (51%), Positives = 162/229 (70%), Gaps = 4/229 (1%)

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            K  +SEV   V   V + LS +LEE+P EAKIIV+KV+ A+  R AA++AR++ +RK  
Sbjct: 1   TKNRNSEVSGAVVKIVGEMLSNFLEENPNEAKIIVQKVVLAAKARQAAKKAREMVQRKSP 60

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  + LPGKL+DCS +DP +SELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++ 
Sbjct: 61  MGGSGLPGKLSDCSSKDPAESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 120

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  +G +      ++ KLRYHK++IMTDAD+DG+HI TL+LTF
Sbjct: 121 LHKVYDNEEIKNIYTALGVSVGTEEDSKALNMAKLRYHKVVIMTDADIDGSHISTLILTF 180

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FFR M  LI NG++YI +PPLY + +G    Y  +E+  E++ +  +  
Sbjct: 181 FFRFMKELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLEMAPD 229


>gi|73666157|gb|AAZ79755.1| gyrase B [Salmonella enterica subsp. enterica serovar Livingstone]
          Length = 269

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 154/271 (56%), Positives = 203/271 (74%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRELSFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSS TK+KLVSSEV
Sbjct: 119 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSHTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|255065021|ref|ZP_05316876.1| DNA gyrase subunit B [Neisseria sicca ATCC 29256]
 gi|255050442|gb|EET45906.1| DNA gyrase subunit B [Neisseria sicca ATCC 29256]
          Length = 155

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/113 (50%), Positives = 75/113 (66%), Gaps = 7/113 (6%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
           M+ N   + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+
Sbjct: 1   MTKN---NQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGF 53

Query: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
           A  I V ++ DGS +V DNGRGIP  LH  EG+   E++ TRLHAGGKFN+K+
Sbjct: 54  ATEIDVRIHDDGSLSVHDNGRGIPVGLHPVEGVPVVELVFTRLHAGGKFNKKT 106


>gi|194395108|gb|ACF60188.1| gyrase B subunit [Enterobacter sp. ECC_19]
 gi|194395118|gb|ACF60193.1| gyrase B subunit [Enterobacter sp. ECC_29]
 gi|194395132|gb|ACF60200.1| gyrase B subunit [Enterobacter sp. ECC_130]
 gi|194395152|gb|ACF60210.1| gyrase B subunit [Enterobacter sp. ECC_117]
          Length = 139

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 82/142 (57%), Positives = 98/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+   PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I 
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LRDKRDNKE--DHFHYEGGIKA 139


>gi|194395088|gb|ACF60178.1| gyrase B subunit [Enterobacter sp. ECC_101]
 gi|194395102|gb|ACF60185.1| gyrase B subunit [Enterobacter sp. ECC_129]
 gi|194395122|gb|ACF60195.1| gyrase B subunit [Enterobacter sp. ECC_104]
 gi|194395158|gb|ACF60213.1| gyrase B subunit [Enterobacter sp. ECC_68]
          Length = 139

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 83/142 (58%), Positives = 98/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+   PL VTG   + TGT V F PS + F+   +F YD L  RLRELSFLNS V I 
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LRDKRDNKE--DHFHYEGGIKA 139


>gi|218937743|gb|ACL13031.1| DNA gyrase subunit B [Lactobacillus ultunensis]
          Length = 279

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 120/279 (43%), Positives = 184/279 (65%)

Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241
                F+   L++R+REL+FLN  ++++  DKR          Y+GGI+ +V++L++ ++
Sbjct: 1   TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDSAETDVYKYEGGIKEYVAFLNKGQE 60

Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301
            L   PI ++ + + I +++A+++ +GY   ++ F NNI   +GG H +G ++ALTR + 
Sbjct: 61  VLFDEPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 120

Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361
            Y  K+   K    ++ G+D REG T+V+S+K P P+F  QTK KL +S+ R+ V+   +
Sbjct: 121 DYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTKLGNSDARTAVDKAFS 180

Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421
           +  S +L E+P   + IV+K   A   R AA+RAR++TR+K  L+IA+LPGKLAD +  D
Sbjct: 181 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 240

Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460
           P  SELF+VEG+SAGGSAKQGRSR  QAILP+RGKILNV
Sbjct: 241 PNISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNV 279


>gi|296427564|gb|ADH16653.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427566|gb|ADH16654.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427568|gb|ADH16655.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427570|gb|ADH16656.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427572|gb|ADH16657.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427574|gb|ADH16658.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427578|gb|ADH16660.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427580|gb|ADH16661.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427582|gb|ADH16662.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427584|gb|ADH16663.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427586|gb|ADH16664.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427588|gb|ADH16665.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427590|gb|ADH16666.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427592|gb|ADH16667.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427596|gb|ADH16669.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|307603323|gb|ADN68290.1| GyrB [Cronobacter sakazakii]
 gi|307603325|gb|ADN68291.1| GyrB [Cronobacter sakazakii]
          Length = 134

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 80/137 (58%), Positives = 99/137 (72%), Gaps = 4/137 (2%)

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I++ ++++G
Sbjct: 1   SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIRREGKIHQQTYVHG 60

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID 212
           +   PL VTG   + TGT+V F PS + F+   +F YD L  RLRELSFLNS V I L+D
Sbjct: 61  VPQAPLAVTGDT-DQTGTQVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLVD 119

Query: 213 KRSPEPREITMFYKGGI 229
           KR  +  +    Y+GGI
Sbjct: 120 KRDGK--QDHFHYEGGI 134


>gi|291002576|gb|ADD71493.1| DNA gyrase B [Enterovibrio norvegicus]
          Length = 272

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 139/273 (50%), Positives = 199/273 (72%), Gaps = 3/273 (1%)

Query: 143 GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFL 202
           G +++  +++G+ + PL   G   ++TGT + F PS + F+   F+YD L  RLRELSFL
Sbjct: 1   GQVHQQVYVHGVREAPLGPIGDT-DETGTRIRFWPSGETFTDLLFHYDILAKRLRELSFL 59

Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDL 261
           NS V I L+D+R  E +     Y+GGI AFV +L+R+K P+  S    +  R++ +++++
Sbjct: 60  NSGVSIRLVDER-EEDKSDHFTYEGGIRAFVEHLNRNKNPIHPSVFHFEHEREDGVTVEV 118

Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321
           +M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY+EK   SKK   +  GDD
Sbjct: 119 SMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSYMEKEGYSKKANAATSGDD 178

Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381
            REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ LS +L E P +AKI+  K
Sbjct: 179 AREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLSEFLIESPQDAKIVCSK 238

Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414
           ++DA+  R+AAR+AR++TRRKG LD+  LPGKL
Sbjct: 239 IIDAARAREAARKAREMTRRKGALDLGGLPGKL 271


>gi|33087709|gb|AAP92985.1| DNA gyrase subunit B [Yersinia frederiksenii ATCC 33641]
          Length = 184

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 95/187 (50%), Positives = 127/187 (67%), Gaps = 4/187 (2%)

Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           GGLHGVGVSVVNALS  L+L I+REG ++E ++  G+   PL V G   + TGT V F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRFWP 59

Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
           S   F +  +F Y+ L  RLRELSFLNS V I L DKR+ +       Y+GGI+AFV YL
Sbjct: 60  SFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE--DHFHYEGGIKAFVEYL 117

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
           +++K P+          +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+
Sbjct: 118 NKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 177

Query: 297 TRQITSY 303
           TR + SY
Sbjct: 178 TRTLNSY 184


>gi|194395100|gb|ACF60184.1| gyrase B subunit [Enterobacter sp. ECC_118]
 gi|194395130|gb|ACF60199.1| gyrase B subunit [Enterobacter sp. ECC_121]
 gi|194395170|gb|ACF60219.1| gyrase B subunit [Enterobacter sp. ECC_42]
          Length = 139

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 83/142 (58%), Positives = 98/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+   PL VTG   + TGT V F PS + F+   +F YD L  RLRELSFLNS V I 
Sbjct: 61  THGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LRDKRDNKE--DHFHYEGGIKA 139


>gi|194395160|gb|ACF60214.1| gyrase B subunit [Enterobacter sp. ECC_105]
          Length = 139

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 83/142 (58%), Positives = 97/142 (68%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+   PL VTG     TGT V F PS + F+   +F YD L  RLRELSFLNS V I 
Sbjct: 61  THGVPQAPLAVTGDTE-KTGTMVRFCPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LRDKRDNKE--DHFHYEGGIKA 139


>gi|194395164|gb|ACF60216.1| gyrase B subunit [Enterobacter sp. ECC_22]
          Length = 139

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 82/142 (57%), Positives = 98/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQIS 209
            +G+   PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I 
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVSEFEYEILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LRDKRDNKE--DHFHYEGGIKA 139


>gi|76786484|gb|ABA54991.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 246

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 113/249 (45%), Positives = 167/249 (67%), Gaps = 3/249 (1%)

Query: 132 SSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT 191
           S  L L ++R G I+E ++++G+    + + G +   TGT++ F PS++ F    F++D 
Sbjct: 1   SEELILTVRRSGKIWEQTYVHGVPQERMKIVGDSE-TTGTQIHFKPSAETFKNIHFSWDV 59

Query: 192 LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251
           L  R+RELSFLNS V I L D+RS +       Y+GG+ AFV YL+ +K  + Q      
Sbjct: 60  LAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNI 117

Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311
              D I +++A++WND ++EN+ CFTNNIPQ+DGGTHL G RSALTR + +Y+E+   +K
Sbjct: 118 QREDGIGVEIALQWNDSFNENLSCFTNNIPQRDGGTHLVGYRSALTRNLNNYIEQEGLAK 177

Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371
           K K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    S +L E+
Sbjct: 178 KHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLEN 237

Query: 372 PLEAKIIVK 380
           P EAK++V 
Sbjct: 238 PNEAKLVVG 246


>gi|89143202|emb|CAJ57498.1| DNA gyrase subunit B [Microbacterium maritypicum]
          Length = 292

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 122/292 (41%), Positives = 174/292 (59%), Gaps = 17/292 (5%)

Query: 198 ELSFLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFVSY--LDRHKKP 242
           +++FLN  ++I L D+R               +      FY+ G+  +V Y    RH + 
Sbjct: 1   QMAFLNKGLRIELRDERDSSAYEVEEDGSTVTKQPGDVFFYERGLVDYVEYLNKVRHAEV 60

Query: 243 LMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
           +    I  +       IS+++AM+W   Y ENV  + N I   +GGTH  G R+ALT  +
Sbjct: 61  VNDEIIAFESEDTERKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLV 120

Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
             Y   +   K+   ++ GDD REG T+V+SIK+ +P+F  QTK KL ++E ++ V+  V
Sbjct: 121 NKYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVV 180

Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
            D L  W E +P +AK +++K +DA+  R AAR+AR+  RRK V + A++P KL DC+ +
Sbjct: 181 GDQLGDWFERNPNQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSK 240

Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472
           DP  SE+FLVEGDSAGGSA QGR    QAIL LRGKILNVERAR DK L ++
Sbjct: 241 DPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNK 292


>gi|296427576|gb|ADH16659.1| DNA gyrase subunit B [Cronobacter dublinensis]
 gi|296427594|gb|ADH16668.1| DNA gyrase subunit B [Cronobacter turicensis]
          Length = 134

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/137 (57%), Positives = 98/137 (71%), Gaps = 4/137 (2%)

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I++ ++++G
Sbjct: 1   SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIRREGKIHQQTYVHG 60

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID 212
           +   PL VTG     TGT+V F PS + F+   +F Y+ L  RLRELSFLNS V I L+D
Sbjct: 61  VPQAPLAVTGDTE-QTGTQVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLVD 119

Query: 213 KRSPEPREITMFYKGGI 229
           KR  +  +    Y+GGI
Sbjct: 120 KRDGK--QDHFHYEGGI 134


>gi|296427598|gb|ADH16670.1| DNA gyrase subunit B [Cronobacter muytjensii]
          Length = 134

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/137 (58%), Positives = 97/137 (70%), Gaps = 4/137 (2%)

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153
           SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I++ ++++G
Sbjct: 1   SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIRREGKIHQQTYVHG 60

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLID 212
           +   PL VTG     TGT+V F PS + F+   +F YD L  RLRELSFLNS V I L+D
Sbjct: 61  VPQAPLAVTGDTE-QTGTQVRFWPSHETFTNVTEFEYDILAKRLRELSFLNSGVSIRLVD 119

Query: 213 KRSPEPREITMFYKGGI 229
           KR  +       Y+GGI
Sbjct: 120 KRDGKE--DHFHYEGGI 134


>gi|146424623|dbj|BAF62120.1| DNA gyrase B subunit [Rhodopseudomonas oryzae]
          Length = 196

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 109/193 (56%), Positives = 137/193 (70%)

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
           SYKVSGGLHGVGVSVVNALSS L LR+ R    + + F +G    PL V G A    GTE
Sbjct: 1   SYKVSGGLHGVGVSVVNALSSKLMLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRGTE 60

Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
           VTF  S++ F+  ++N+ TL+HRLREL+FLNS V I L D R    +   M Y+GG+  F
Sbjct: 61  VTFYASAETFTHIEYNFATLEHRLRELAFLNSGVYIVLSDMRHAVEKREEMRYEGGVTEF 120

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YLDR+KKP++ +P+ I    + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G 
Sbjct: 121 VKYLDRNKKPIVPTPVVIGAELNGIAVEAALWWNDTYHENVLCFTNNIPQRDGGTHLAGF 180

Query: 293 RSALTRQITSYVE 305
           R+ALTRQIT Y E
Sbjct: 181 RAALTRQITGYAE 193


>gi|158252624|gb|ABW23796.1| DNA gyrase [Pantoea vagans]
          Length = 247

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 120/250 (48%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELS 200
           EG +++  +++G+ + PL VTG   + TGT V F PS + F+    F Y+ L  RLRELS
Sbjct: 1   EGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAPGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FS +TK+KLVSSEV+S VE  +N+ L+ +L E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSLKTKDKLVSSEVKSAVEHQMNELLAEYLLENPSDAKIVVG 237

Query: 381 KVLDASMVRD 390
           K++DA+  R+
Sbjct: 238 KIIDAARARE 247


>gi|29652952|gb|AAO87445.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652956|gb|AAO87447.1| DNA gyrase B [Listeria monocytogenes]
          Length = 215

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 115/203 (56%), Positives = 150/203 (73%), Gaps = 2/203 (0%)

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA+RAR++ R+   L+I+SLPGKLADCS R+P+ SEL++VEGDSAGGSAKQGR R  
Sbjct: 1   ARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLF 60

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILP+RGKILNVE+AR D++L+++EI T+ TA+GTG G D FD++K RYHK+IIMTDAD
Sbjct: 61  QAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDAD 119

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDGAHIRTLLLT F+R M  L+  G++YI +PPLY I  GK ++YV  +  LEDYL +  
Sbjct: 120 VDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLD 179

Query: 568 LSEE-IELFCDSKGVISKNDLRN 589
              +         G ++   L +
Sbjct: 180 GDTKYSIQRYKGLGEMNPEQLWD 202



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 6/180 (3%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           +  + QA++     + N E  +   +    ++      +  
Sbjct: 37  ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 96

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +  S +    L+      V    +        +      + +  I       L  
Sbjct: 97  GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIY-IAQPPLYQ 155

Query: 708 ICNGDKIK-ITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765
           I +G +I+ +     L D + S  G    S+QRYKGLGEMN  QLW+TT+NP+ R+LL+V
Sbjct: 156 IKHGKQIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 215


>gi|224496204|gb|ACN52483.1| gyrB [Enterobacter sp. LMG 5336]
          Length = 246

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 123/249 (49%), Positives = 172/249 (69%), Gaps = 4/249 (1%)

Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELS 200
           EG      + +G+ + PL VTG     TGT V F PS + F+   +F Y+ L  RLRELS
Sbjct: 1   EGKGERQIYQHGVPEAPLAVTGDTE-KTGTLVRFWPSLETFTNVTEFEYEILAKRLRELS 59

Query: 201 FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260
           FLNS V I L DKR  +       Y+GGI+AFV YL+++K P+  +       +D I ++
Sbjct: 60  FLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVE 117

Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320
           +A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K   SKK K S  GD
Sbjct: 118 VALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGD 177

Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           D REG  +V+S+K+PDP+FSSQTK+KLVSSEV+S VE  +N+ LS +L+E+P +AKI+V 
Sbjct: 178 DAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSDYLQENPSDAKIVVG 237

Query: 381 KVLDASMVR 389
           K++DA+  R
Sbjct: 238 KIIDAARAR 246


>gi|194395094|gb|ACF60181.1| gyrase B subunit [Enterobacter sp. ECC_76]
 gi|194395112|gb|ACF60190.1| gyrase B subunit [Enterobacter sp. ECC_15]
 gi|194395148|gb|ACF60208.1| gyrase B subunit [Enterobacter sp. ECC_125]
          Length = 139

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/142 (59%), Positives = 99/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+   PL VTG   + TGT V F PS + F+   +F Y+ L  RLRELSFLNS V I 
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  + RE    Y+GGI A
Sbjct: 120 LRDKR--DNREDHFHYEGGIRA 139


>gi|6691617|dbj|BAA89367.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/407 (24%), Positives = 162/407 (39%), Gaps = 42/407 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDT 169
            K++K S GL+GVG   VNALS + ++   R+       F  G L   L      +    
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGNLT--LEEDIIESTKRK 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G+
Sbjct: 59  GTKVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGL 110

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  +      +  +    I + G    I+I         Y E    F N      GGTHL
Sbjct: 111 KDLLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHL 166

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
              R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S
Sbjct: 167 GAFRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGS 217

Query: 350 SEV-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLT 399
           +++       R+ V  F+   L  +L ++P    ++++K+L A   R      R      
Sbjct: 218 TDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETVDLLLRKILQAERERKELSGIRKLAKDR 277

Query: 400 RRKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK
Sbjct: 278 AKKSNLHNKKLRDCRAHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGK 337

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            LN        +  ++E   L  AL          +  LRY+ I+I 
Sbjct: 338 PLNSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIA 379


>gi|307592552|gb|ADN65364.1| DNA gyrase subunit B [Chryseobacterium luteum]
          Length = 239

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/229 (51%), Positives = 162/229 (70%), Gaps = 4/229 (1%)

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +SEV   V+  V + L+ ++EE+P EAKIIV KV+ A+  R AA++AR++ +RK  
Sbjct: 1   TKLGNSEVSGAVDKIVREMLTNFIEENPNEAKIIVHKVVLAAKARQAAKKAREMVQRKSP 60

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           +  + LPGKL+DCS  DP +SELFLVEGDSAGG+AKQGR R  QAILPLRGKILNVE++ 
Sbjct: 61  MGGSGLPGKLSDCSSSDPAESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 120

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTF 520
             K+  ++EI  + TALG  +G +      ++ KLRYHK++IMTDAD+DG+HI TL+LTF
Sbjct: 121 LHKVYDNEEIKNIYTALGVSVGTEEDSKALNMAKLRYHKVLIMTDADIDGSHISTLILTF 180

Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569
           FFR M  LI NG++YI +PPLY + +G    Y  +E+  E++ +  +  
Sbjct: 181 FFRFMKELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLEMAPD 229


>gi|294668239|ref|ZP_06733346.1| DNA topoisomerase IV, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309947|gb|EFE51190.1| DNA topoisomerase IV, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 132

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 4/109 (3%)

Query: 5   IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64
           +  + Y   SI +LKGL+ VK+RP MY   TD  +   H+  EV+DNA DE+L G+A  I
Sbjct: 1   MSKTQYSESSITVLKGLEPVKERPGMYT-RTDSPT---HICQEVIDNAADEALGGFATEI 56

Query: 65  TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113
            V ++ DGS +V DNGRGIP  LH  EG+   E++ TRLHAGGKFN+K+
Sbjct: 57  DVRIHDDGSLSVHDNGRGIPVGLHPVEGVPVVELVFTRLHAGGKFNKKT 105


>gi|326902002|gb|AEA10279.1| DNA gyrase subunit B [Xanthomonas arboricola pv. corylina]
 gi|326902004|gb|AEA10280.1| DNA gyrase subunit B [Xanthomonas arboricola pv. corylina]
 gi|326902006|gb|AEA10281.1| DNA gyrase subunit B [Xanthomonas arboricola pv. corylina]
 gi|326902008|gb|AEA10282.1| DNA gyrase subunit B [Xanthomonas arboricola pv. corylina]
 gi|326902010|gb|AEA10283.1| DNA gyrase subunit B [Xanthomonas arboricola pv. corylina]
 gi|326902012|gb|AEA10284.1| DNA gyrase subunit B [Xanthomonas arboricola pv. corylina]
 gi|326902014|gb|AEA10285.1| DNA gyrase subunit B [Xanthomonas arboricola pv. corylina]
 gi|326902016|gb|AEA10286.1| DNA gyrase subunit B [Xanthomonas arboricola pv. corylina]
          Length = 225

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619
             YL + ++     +    +  I+   L   +      ++ I      +D   +   +  
Sbjct: 3   HAYLASNAVEGAALIPATDEPPITGEALEKLLMLFTSANEAIARNAHRYDPALLTALIDL 62

Query: 620 GVFNCESDQEINV-----SLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQ 672
              + +  Q              + NR      + +  +  + +  ++ ++  R   G +
Sbjct: 63  PPLDVDKLQAEGEVHPTLDALQAVLNRGTLGTARYQLRFDPATDGASASLVAVRRHMGEE 122

Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
              VL   +  S   +  R  S  + +       ++       IT        +    ++
Sbjct: 123 FTQVLPMGAFESGELRPLREVSLALHDLVREGAQIVRGNKTHPITSFAQAHAWLLEEAKR 182

Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775
           G  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  AD 
Sbjct: 183 GRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAADQ 225


>gi|148470219|gb|ABQ66057.1| gyrase b [uncultured bacterium]
          Length = 171

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 104/169 (61%), Gaps = 3/169 (1%)

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156
           EVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALSS L L I R G ++E  + +G   
Sbjct: 6   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 65

Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216
            PL V G   + +GT V F PS   FS   FN + L  RLRELSFLN+ V+I L D+R  
Sbjct: 66  YPLRVIGET-DSSGTTVRFWPSGLTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI- 123

Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265
              E    Y+GG+  FV Y++  K  L +       + + I +++A++W
Sbjct: 124 -NLEHVYDYEGGLSEFVKYINEGKTHLNEIFHFTADTENGIGVEVALQW 171


>gi|194395084|gb|ACF60176.1| gyrase B subunit [Enterobacter sp. ECC_72]
 gi|194395090|gb|ACF60179.1| gyrase B subunit [Enterobacter sp. ECC_66]
 gi|194395092|gb|ACF60180.1| gyrase B subunit [Enterobacter sp. ECC_98]
 gi|194395110|gb|ACF60189.1| gyrase B subunit [Enterobacter sp. ECC_11]
 gi|194395114|gb|ACF60191.1| gyrase B subunit [Enterobacter sp. ECC_2]
 gi|194395120|gb|ACF60194.1| gyrase B subunit [Enterobacter sp. ECC_93]
 gi|194395124|gb|ACF60196.1| gyrase B subunit [Enterobacter sp. ECC_34]
 gi|194395126|gb|ACF60197.1| gyrase B subunit [Enterobacter sp. ECC_13]
 gi|194395134|gb|ACF60201.1| gyrase B subunit [Enterobacter sp. ECC_124]
 gi|194395138|gb|ACF60203.1| gyrase B subunit [Enterobacter sp. ECC_36]
 gi|194395162|gb|ACF60215.1| gyrase B subunit [Enterobacter sp. ECC_1]
 gi|194395166|gb|ACF60217.1| gyrase B subunit [Enterobacter sp. ECC_25]
 gi|194395174|gb|ACF60221.1| gyrase B subunit [Enterobacter sp. ECC_103]
          Length = 139

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/142 (59%), Positives = 99/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+ D PL VTG   + TGT V F PS + F+   +F YD L  RLRELSFLNS V I 
Sbjct: 61  QHGVPDAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LRDKRDNKE--DHFHYEGGIKA 139


>gi|73666139|gb|AAZ79746.1| gyrase B [Salmonella enterica subsp. enterica serovar Manhattan]
          Length = 269

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 154/271 (56%), Positives = 203/271 (74%), Gaps = 3/271 (1%)

Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232
            F PS + F+   +F Y+ L  RLRE SFLNS V I L DKR  +       Y+GGI+AF
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLREPSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAF 58

Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292
           V YL+++K P+  +       +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G 
Sbjct: 59  VEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 118

Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352
           R+A+TR + +Y++K   SKK K S  GDD REG  +V+S+K+PDP+FSSQTK+KLVSSEV
Sbjct: 119 RAAMTRTLDAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 178

Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412
           +S VE  +N+ LS +L E+P +AKI+V K++DA+  R+AARRAR++TRRKG LD+A LPG
Sbjct: 179 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPG 238

Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGR 443
           KLADC ERDP  SEL+LVEGDSAGGSAKQGR
Sbjct: 239 KLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|94509|pir||JC1160 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B -
          Buchnera aphidicola (fragment)
          Length = 86

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 67/84 (79%)

Query: 8  SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67
           +YD+  I+IL+GLDAV+KRP MYIGDTD  SGLHHM++E++DN+IDE+L G+   I V 
Sbjct: 3  DTYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVV 62

Query: 68 LNMDGSCTVSDNGRGIPTDLHKEE 91
          ++ D S ++ D+GRGIPTD+H EE
Sbjct: 63 IHSDNSVSIKDDGRGIPTDIHPEE 86


>gi|6691597|dbj|BAA89357.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 102/407 (25%), Positives = 163/407 (40%), Gaps = 42/407 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDT 169
            K++K S GL+GVG   VNALS + ++   R+       F  G L   L      +    
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGNLT--LEEDIIESTKRK 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G+
Sbjct: 59  GTKVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGL 110

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  +      +  +    I + G    I+I         Y E    F N      GGTHL
Sbjct: 111 KDLLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHL 166

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
              R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S
Sbjct: 167 GAFRESIVKTIKEFCNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGS 217

Query: 350 SEV-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLT 399
           +++       R+ V  F+   L  +L ++P  A ++++K+L A   R      R      
Sbjct: 218 TDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDR 277

Query: 400 RRKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK
Sbjct: 278 AKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGK 337

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            LN        +  ++E   L  AL          +  LRY+ I+I 
Sbjct: 338 PLNSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIA 379


>gi|40019239|emb|CAE92282.1| DNA gyrase subunit B [Moraxella catarrhalis]
          Length = 84

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 68/84 (80%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  +GLHHM++EV+DNAIDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+
Sbjct: 1   DTDDGTGLHHMVFEVVDNAIDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGV 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVS 117
           SAAEVIMT LHAGGKF+  SYKVS
Sbjct: 61  SAAEVIMTVLHAGGKFDDNSYKVS 84


>gi|298103863|dbj|BAJ09367.1| DNA gyrase subunit B [Streptococcus intermedius]
          Length = 134

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 1/133 (0%)

Query: 53  IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112
           IDE+L G+A  I V +  D S TV D+GRGIP D+ ++ G  A E + T LHAGGKF   
Sbjct: 1   IDEALAGFATHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGG 60

Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172
            YKVSGGLHGVG SVVNALS+ L +R+ + G I+   +  G +   L + G   + TGT 
Sbjct: 61  GYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGQVVADLKIIGET-DRTGTT 119

Query: 173 VTFLPSSDIFSVQ 185
           V F P  +IF+  
Sbjct: 120 VHFTPDPEIFTET 132


>gi|111182884|gb|ABH07787.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243309|gb|ABS71827.1| gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243311|gb|ABS71828.1| gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243313|gb|ABS71829.1| gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243315|gb|ABS71830.1| gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 173

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/153 (74%), Positives = 134/153 (87%)

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 21  MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 80

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLL
Sbjct: 81  LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 140

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL 550
           LTFF+RQMP ++  G +YI +PPLY + +GK  
Sbjct: 141 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE 173


>gi|194395150|gb|ACF60209.1| gyrase B subunit [Enterobacter sp. ECC_153]
 gi|194395172|gb|ACF60220.1| gyrase B subunit [Enterobacter sp. ECC_39]
          Length = 139

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/142 (58%), Positives = 99/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+ + PL VTG   + TGT V F PS + F+   +F YD L  RLRELSFLNS V I 
Sbjct: 61  QHGVPEAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LRDKRDNKE--DHFHYEGGIKA 139


>gi|281331642|emb|CAZ40015.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 228

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/230 (48%), Positives = 152/230 (66%), Gaps = 3/230 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDF 187
           NALS  L L I + G  Y+  + +G   +PL   G +    GT + F PS   F    +F
Sbjct: 1   NALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPST-KRGTTLRFWPSVKAFHDNVEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV +L + K PL  + 
Sbjct: 60  HYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVEHLAQLKTPLHPNV 118

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR + +Y+E++
Sbjct: 119 ISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVLNNYIEQN 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE
Sbjct: 179 GIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVE 228


>gi|169840071|ref|ZP_02873259.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate
           TM7a]
          Length = 99

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 2/90 (2%)

Query: 19  KGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSD 78
           +GL+AV+KRP MYIG T    GLHH+++E++DN++DE+L G  D ITV +       V+D
Sbjct: 1   EGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNSVDEALAGVCDKITVKILEGNIIEVTD 59

Query: 79  NGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108
           NGRGIP  +H + G S  EV++T LHAGG 
Sbjct: 60  NGRGIPVGMH-KTGKSTLEVVLTVLHAGGN 88


>gi|29652881|gb|AAO87410.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652994|gb|AAO87466.1| DNA gyrase B [Listeria monocytogenes]
          Length = 193

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 113/184 (61%), Positives = 145/184 (78%), Gaps = 1/184 (0%)

Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447
            R AA+RAR++ R+   L+I+SLPGKLADCS R+P+ SEL++VEGDSAGGSAKQGR R  
Sbjct: 1   ARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLF 60

Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507
           QAILP+RGKILNVE+AR D++L+++EI T+ TA+GTG G D FD++K RYHK+IIMTDAD
Sbjct: 61  QAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDAD 119

Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567
           VDGAHIRTLLLT F+R M  L+  G++YI +PPLY I  GK ++YV  +  LEDYL +  
Sbjct: 120 VDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLD 179

Query: 568 LSEE 571
              +
Sbjct: 180 GDTK 183


>gi|194395082|gb|ACF60175.1| gyrase B subunit [Enterobacter sp. ECC_113]
 gi|194395086|gb|ACF60177.1| gyrase B subunit [Enterobacter sp. ECC_48]
 gi|194395096|gb|ACF60182.1| gyrase B subunit [Enterobacter sp. ECC_41]
 gi|194395104|gb|ACF60186.1| gyrase B subunit [Enterobacter sp. ECC_9]
 gi|194395116|gb|ACF60192.1| gyrase B subunit [Enterobacter sp. ECC_24]
 gi|194395128|gb|ACF60198.1| gyrase B subunit [Enterobacter sp. ECC_20]
 gi|194395136|gb|ACF60202.1| gyrase B subunit [Enterobacter sp. ECC_60]
 gi|194395142|gb|ACF60205.1| gyrase B subunit [Enterobacter sp. ECC_152]
 gi|194395146|gb|ACF60207.1| gyrase B subunit [Enterobacter sp. ECC_146]
 gi|194395154|gb|ACF60211.1| gyrase B subunit [Enterobacter sp. ECC_148]
 gi|194395168|gb|ACF60218.1| gyrase B subunit [Enterobacter sp. ECC_73]
 gi|194395176|gb|ACF60222.1| gyrase B subunit [Enterobacter sp. ECC_85]
 gi|194395178|gb|ACF60223.1| gyrase B subunit [Enterobacter sp. ECC_80]
 gi|194395180|gb|ACF60224.1| gyrase B subunit [Enterobacter cloacae]
          Length = 139

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/142 (58%), Positives = 98/142 (69%), Gaps = 4/142 (2%)

Query: 91  EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150
           EG+SAAEVIMT LHAGGKF+  SYKVSGGLHGVGVSVVNALS  L+L I+REG I+   +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 60

Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQIS 209
            +G+ + PL VTG     TGT V F PS + F+   +F YD L  RLRELSFLNS V I 
Sbjct: 61  QHGVPEAPLAVTGDTE-KTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 210 LIDKRSPEPREITMFYKGGIEA 231
           L DKR  +       Y+GGI+A
Sbjct: 120 LRDKRDNKE--DHFHYEGGIKA 139


>gi|109842718|gb|ABG02286.2| gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 173

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 114/153 (74%), Positives = 134/153 (87%)

Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457
           +TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKI
Sbjct: 21  MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 80

Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517
           LNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLL
Sbjct: 81  LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 140

Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL 550
           LTFF+RQMP ++  G +YI +PPLY + +GK  
Sbjct: 141 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE 173


>gi|40019243|emb|CAE92285.1| DNA gyrase subunit B [Legionella pneumophila]
          Length = 84

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 68/84 (80%)

Query: 34  DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93
           DTD  +GLHHM++EV+DN+IDESL GY   I VT++ D S TV D+GRGIP D+HKEEG 
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDESLAGYCKEIFVTIHSDESITVKDDGRGIPVDIHKEEGK 60

Query: 94  SAAEVIMTRLHAGGKFNQKSYKVS 117
           SAAEVIMT LHAGGKF+  SYKVS
Sbjct: 61  SAAEVIMTVLHAGGKFDDNSYKVS 84


>gi|6691599|dbj|BAA89358.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 102/407 (25%), Positives = 163/407 (40%), Gaps = 42/407 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDT 169
            K++K S GL+GVG   VNALS + ++   R+       F  G L   L      +    
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGNLT--LEEDIIESTKRK 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G+
Sbjct: 59  GTKVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGL 110

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  +      +  +    I + G    I+I         Y E    F N      GGTHL
Sbjct: 111 KDLLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFANGQNTTQGGTHL 166

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
              R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S
Sbjct: 167 GAFRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGS 217

Query: 350 SEV-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLT 399
           +++       R+ V  F+   L  +L ++P  A ++++K+L A   R      R      
Sbjct: 218 TDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDR 277

Query: 400 RRKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK
Sbjct: 278 AKKYNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGK 337

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            LN        +  ++E   L  AL          +  LRY+ I+I 
Sbjct: 338 PLNSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIA 379


>gi|6691605|dbj|BAA89361.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 102/407 (25%), Positives = 163/407 (40%), Gaps = 42/407 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDT 169
            K++K S GL+GVG   VNALS + ++   R+       F  G L   L      +    
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGNLT--LEEDIIESTKRK 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G+
Sbjct: 59  GTKVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGL 110

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  +      +  +    I + G    I+I         Y E    F N      GGTHL
Sbjct: 111 KDLLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHL 166

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
              R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S
Sbjct: 167 GAFRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGS 217

Query: 350 SEV-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLT 399
           +++       R+ V  F+   L  +L ++P  A ++++K+L A   R      R      
Sbjct: 218 TDMGPDLPSVRTFVNDFIKTKLDNFLHKNPDTADLLLRKILQAERERKELSGIRKLAKDR 277

Query: 400 RRKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK
Sbjct: 278 AKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGK 337

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            LN        +  ++E   L  AL          +  LRY+ I+I 
Sbjct: 338 PLNSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIA 379


>gi|6691591|dbj|BAA89354.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|6691593|dbj|BAA89355.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|6691595|dbj|BAA89356.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|6691603|dbj|BAA89360.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|6691613|dbj|BAA89365.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|6691615|dbj|BAA89366.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 102/407 (25%), Positives = 163/407 (40%), Gaps = 42/407 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDT 169
            K++K S GL+GVG   VNALS + ++   R+       F  G L   L      +    
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGNLT--LEEDIIESTKRK 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G+
Sbjct: 59  GTKVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGL 110

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  +      +  +    I + G    I+I         Y E    F N      GGTHL
Sbjct: 111 KDLLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHL 166

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
              R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S
Sbjct: 167 GAFRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGS 217

Query: 350 SEV-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLT 399
           +++       R+ V  F+   L  +L ++P  A ++++K+L A   R      R      
Sbjct: 218 TDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDR 277

Query: 400 RRKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK
Sbjct: 278 AKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGK 337

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            LN        +  ++E   L  AL          +  LRY+ I+I 
Sbjct: 338 PLNSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIA 379


>gi|302122528|gb|ADK92933.1| DNA gyrase subunit B [Geobacillus subterraneus]
          Length = 219

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 126/220 (57%), Positives = 164/220 (74%), Gaps = 1/220 (0%)

Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344
           GG H SG + ALTR I  Y  K    K +  ++ G+D REG T+++SIK P P+F  QTK
Sbjct: 1   GGMHESGFKMALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQFEGQTK 60

Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404
            KL +S+ R+V ++  ++    +L EHP  A+ IV+K + A+  R AA++AR+LTRRK  
Sbjct: 61  TKLGNSDARTVTDAVFSERFETFLLEHPAVARKIVEKGMMAARARLAAKKARELTRRKSA 120

Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464
           L+I++LPGKLADCS RDP  SEL++VEGDSAGGSAKQGR R  QAILPLRGKI+NVE+AR
Sbjct: 121 LEISNLPGKLADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKAR 180

Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504
            DK+LS+ E+  +ITALGTGIG+D FDI+K RYHK+IIMT
Sbjct: 181 LDKILSNNEVRAIITALGTGIGED-FDISKARYHKVIIMT 219


>gi|281331650|emb|CAZ40019.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 228

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 112/230 (48%), Positives = 150/230 (65%), Gaps = 3/230 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDF 187
           NALS  L + + + G  Y+  F NG    PL     +    GT V F PS+  F    ++
Sbjct: 1   NALSQKLLVDVFQGGFHYQQEFSNGAAVTPLAKL-ESTTKRGTTVRFWPSTVAFHDNVEY 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V+I L D+R  + R     Y+GGI +FV +L + K PL  + 
Sbjct: 60  HYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGIRSFVEHLAQLKTPLHPNV 118

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I + G  +NI +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR + +Y+E++
Sbjct: 119 ISVTGEHNNIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVLNNYIEQN 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357
             +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE
Sbjct: 179 GIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVE 228


>gi|19909627|dbj|BAB87009.1| DNA gyrase subunit B [Comamonas terrigena]
          Length = 241

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 109/242 (45%), Positives = 149/242 (61%), Gaps = 26/242 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NP 158
           Q SYKVSGGLHGVGVS VNALS  LKL ++R+G  +E+ F  G +             +P
Sbjct: 1   QNSYKVSGGLHGVGVSCVNALSVKLKLTVRRDGKTHEIDFSRGFVQNRLIEVVDGVEISP 60

Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217
           + + G   +  GT+V FLP ++IF   + F+Y+ L  RLRELSFLN+ V+I L D+R  +
Sbjct: 61  MRIIGDT-DKRGTKVHFLPDTEIFKENNEFHYEILAKRLRELSFLNNGVRIRLKDERDGK 119

Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWND 267
                    GG++ FV +++ +KK L  +P    GSR            I +++AM+WND
Sbjct: 120 E--DDFSGAGGVQGFVKFINGNKKDLDITPFYATGSRPAESYGGIPGTEIGVEVAMQWND 177

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
           GY E VLCFTNNIPQ+DGGTHL+GLR+A+TR I  Y+  +  +KK K  + GDD REG  
Sbjct: 178 GYTEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYITDNDLAKKAKVEISGDDMREGLC 237

Query: 328 SV 329
           +V
Sbjct: 238 AV 239


>gi|45593188|gb|AAS68205.1| gyrase B [Pelobacter carbinolicus DSM 2380]
          Length = 237

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 104/237 (43%), Positives = 152/237 (64%), Gaps = 3/237 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
            IY   ++ G+ D PL   G      GT +TF P  +IF + DF+++TL  RLREL+FLN
Sbjct: 1   RIYRQGYVRGVPDAPLREEGDTT-KRGTRITFWPDPEIFEITDFSFETLSKRLRELAFLN 59

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
             V I ++D+RS +  +    Y+GGI +FVSYL+R K PL   PI   G R+ + I++A 
Sbjct: 60  GGVHIHIVDERSEKRHD--FHYEGGIISFVSYLNRAKTPLHAEPIFFSGEREGVQIEVAF 117

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           ++NDGY E +  F NNI   +GGTHL G ++ALTR + SY   +   K  K S+ GDD R
Sbjct: 118 QYNDGYDEKIFTFANNINTHEGGTHLVGFKAALTRTMNSYATANNLLKNVKASISGDDLR 177

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           EG  +V+S+K+PDP+F  QTK KL +SE++  VE+ +N+ L+ ++EE+P  AK I++
Sbjct: 178 EGMAAVISVKVPDPQFEGQTKTKLGNSEIKGYVETLINEKLATFMEENPNVAKRILE 234


>gi|29652895|gb|AAO87417.1| DNA gyrase B [Listeria monocytogenes]
          Length = 198

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/199 (57%), Positives = 148/199 (74%), Gaps = 2/199 (1%)

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR++ R+   L+I+SLPGKLADCS R+P+ SEL++VEGDSAGGSAKQGR R  QAI
Sbjct: 1   AAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAI 60

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LP+RGKILNVE+AR D++L+++EI T+ TA+GTG G D FD++K RYHK+IIMTDADVDG
Sbjct: 61  LPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDG 119

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLT F+R M  L+  G++YI +PPLY I  GK ++YV  +  LEDYL +     
Sbjct: 120 AHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASLDGDT 179

Query: 571 E-IELFCDSKGVISKNDLR 588
           +         G ++   L 
Sbjct: 180 KYSIQRYKGLGEMNPEQLW 198



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 4/165 (2%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           +  + QA++     + N E  +   +    ++      +  
Sbjct: 34  ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 93

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +  S +    L+      V    +        +      + +  I      +  +
Sbjct: 94  GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQI 153

Query: 708 ICNGDKIKITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLW 751
                   +     L D + S  G    S+QRYKGLGEMN  QLW
Sbjct: 154 KHGKQVEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLW 198


>gi|285310180|emb|CBH41071.1| DNA gyrase beta subunit [Pseudomonas sp. CCUG 53068]
          Length = 269

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 127/270 (47%), Positives = 188/270 (69%), Gaps = 4/270 (1%)

Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQ 193
            L+L I+REG ++E  + +G+   PL   G   + +GTEV F  S++ F+   F++D L 
Sbjct: 1   ELRLTIRREGKVWEQIYRHGVPQFPLRPVGET-DGSGTEVHFKASNETFTSIHFSWDILA 59

Query: 194 HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQG 252
            R+RELSFLNS V I L D+R+ +       Y+GG+ AFV YL+ +K  + Q      Q 
Sbjct: 60  KRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLRAFVEYLNTNKNIVNQVFHFNTQR 117

Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312
             D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + +Y+E+   +KK
Sbjct: 118 EEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNYIEQEGLAKK 177

Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372
            K +  GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE  +    + +L E+P
Sbjct: 178 YKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENP 237

Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRK 402
            EAK +V K++DA+  R+AAR+AR++TRRK
Sbjct: 238 NEAKAVVGKMIDAARAREAARKAREMTRRK 267


>gi|281332020|emb|CAZ39984.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 215

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 102/217 (47%), Positives = 141/217 (64%), Gaps = 3/217 (1%)

Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179
           LHGVGVSVVNALS  L L I + G  Y+  + +G   +PL   G      GT + F PS 
Sbjct: 1   LHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQIGPXT-KRGTTLRFWPSV 59

Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
             F    +F+YD L  RLRELSFLNS V+I L+D+R  + R     Y+GGI +FV +L +
Sbjct: 60  KAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDER-GDGRRDDFHYEGGIRSFVEHLAQ 118

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
            K PL  + I + G  + I++++A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR
Sbjct: 119 LKTPLHPNVISVTGESNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTR 178

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335
            + +Y+E++  +K+ K ++ GDD REG  +VLS+K+P
Sbjct: 179 VLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVP 215


>gi|312099911|gb|ADQ27795.1| gyrase B [Xanthomonas sp. BRIP 53403]
          Length = 228

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 7/228 (3%)

Query: 553 VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
           +KD+ +L  YL N ++     +   ++  I+   L   +      +  +      +D   
Sbjct: 1   LKDDNALNAYLANSAVEGAALIPASNEPPITGAALEKLLLLFASANDAVARNAHRYDPAL 60

Query: 613 IEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHG--SINNSDILVK 665
           +   +     +      E D+  ++     + NR +    + E  +       ++ + V 
Sbjct: 61  LTALIDLPPLDVAQLEAEGDRHASLEALQAVLNRGSLGTARYELRFEPGNEHKSATLKVV 120

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           R   G +    L  ++  S   +  R  +  +         ++       +         
Sbjct: 121 RRHMGEELTTWLPMAAFDSGELRPLREVALALNGLVREGAQIVRGNKTQAVASFAQAHAW 180

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           +F   +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  A
Sbjct: 181 LFDEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAA 228


>gi|6691607|dbj|BAA89362.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 102/407 (25%), Positives = 163/407 (40%), Gaps = 42/407 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDT 169
            K++K S GL+GVG   VNALS + ++   R+       F  G L   L      +    
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGNLT--LEEDIIESTKRK 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G+
Sbjct: 59  GTKVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGL 110

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  +      +  +    I + G    I+I         Y E    F N      GGTHL
Sbjct: 111 KDLLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHL 166

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
              R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S
Sbjct: 167 GAFRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGS 217

Query: 350 SEV-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLT 399
           +++       R+ V  F+   L  +L ++P  A ++++K+L A   R      R      
Sbjct: 218 TDMGPDLPSVRTFVNDFIETKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDR 277

Query: 400 RRKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK
Sbjct: 278 AKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGK 337

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            LN        +  ++E   L  AL          +  LRY+ I+I 
Sbjct: 338 PLNSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIA 379


>gi|34500169|gb|AAQ73669.1| gyrase B [Providencia stuartii]
          Length = 169

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 93/172 (54%), Positives = 116/172 (67%), Gaps = 4/172 (2%)

Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174
           KVSGGLHGVGVSVVNALS  L+L I+R+G ++E ++ +G    PL V G   + TGT V 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELTIRRDGKVHEQTYCHGEPQGPLTVVGET-DQTGTRVR 59

Query: 175 FLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233
           F PS D F  V +F YD L  RLRELSFLNS V I LIDKR  +       Y+GGI+AFV
Sbjct: 60  FWPSLDTFKGVTEFEYDVLAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYEGGIKAFV 117

Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285
            YL R+K P+  S       +D I +++AM+WNDG+ ENV C+TNNIPQ+DG
Sbjct: 118 EYLSRNKTPIHPSVFYFSTEKDGIGVEIAMQWNDGFQENVYCYTNNIPQRDG 169


>gi|312099909|gb|ADQ27794.1| gyrase B [Xanthomonas fragariae]
          Length = 228

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 7/228 (3%)

Query: 553 VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612
           +KD+ +L  YL + ++     +    +  I+   L   +      ++ I      +D   
Sbjct: 1   LKDDAALNAYLASNAVEGAALIPATGEPPITGEALEKLLMLFTSANEAIARNAHRYDPAL 60

Query: 613 IEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVK 665
           +   +     +      E DQ   +     + NR      + +  +  +  N  + ++  
Sbjct: 61  LTALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQLRFDPATENTAATLIAI 120

Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725
           R   G +   VL      S   +  R  S  + +       ++       IT        
Sbjct: 121 RRHMGEEFTQVLPMGVFESGELRPLRDVSLALHDLVREGAQIVRGNKTHPITSFAQAHAW 180

Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773
           +    +KG  +QR+KGLGEMNA QLWETT+NPDTR LL+V+I DA  A
Sbjct: 181 LLEEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIEDAVAA 228


>gi|330971531|gb|EGH71597.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 353

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 119/359 (33%), Positives = 170/359 (47%), Gaps = 7/359 (1%)

Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346
           TH++GLR  L   +  + E      +    +  +D  E    VLS+KM +P+FS QTKE+
Sbjct: 1   THVNGLRQGLLDAMREFCEFRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKER 59

Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406
           L S E  + V   V D  S WL  H      +    ++ +       +A     RK +  
Sbjct: 60  LSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNA---GRRLKASKKVERKRITQ 116

Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466
             +LPGKLADC+ +DP +SELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       
Sbjct: 117 GPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGG 176

Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526
           ++L+SQE+  +  A+G   G    DI++LRY KI I+ DAD DG HI TLL   F +   
Sbjct: 177 EVLASQEVHNIAVAIGVDPGAA--DISQLRYGKICILADADSDGLHIATLLCALFVQHFR 234

Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586
            L+  G +Y+  PPLY I  GK + Y  DE   +  L      ++      ++       
Sbjct: 235 PLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEM 294

Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645
               + +   +D   +         F   + +  +   +       S      N    +
Sbjct: 295 NPPQLRE-TTMDPNTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 352



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 10/79 (12%)

Query: 722 LLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
           +LD + +  ++G   + R+KGLGEMN  QL ETT++P+TR L+++ + D +   ++   L
Sbjct: 270 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDML 329

Query: 781 M-----GDEVEPRREFIQE 794
           +     GD    R+ +++ 
Sbjct: 330 LAKKRAGD----RKSWLES 344


>gi|4586422|dbj|BAA76398.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 102/407 (25%), Positives = 162/407 (39%), Gaps = 42/407 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDT 169
            K++K S GL+GVG   VNALS + ++   R+       F  G L   L      +    
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGNLT--LEEDIIESTKRK 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G+
Sbjct: 59  GTKVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGL 110

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  +      +  +    I + G    I+I         Y E    F N      GGTHL
Sbjct: 111 KDLLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHL 166

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
              R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S
Sbjct: 167 GAFRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGS 217

Query: 350 SEV-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLT 399
           +++       R+ V  F+   L  +L ++P  A ++++K+L A   R      R      
Sbjct: 218 TDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDR 277

Query: 400 RRKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK
Sbjct: 278 AKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGK 337

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            LN        +  ++E   L  AL          +  LRY  I+I 
Sbjct: 338 PLNSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYDNIVIA 379


>gi|45593180|gb|AAS68152.1| gyrase B [Geobacter bemidjiensis Bem]
          Length = 237

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 95/237 (40%), Positives = 154/237 (64%), Gaps = 3/237 (1%)

Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203
           +++  ++  G+   PL +TG      GT++TF P  +IF   +F++D L  RLREL+FLN
Sbjct: 1   HVHTQTYRKGVPQAPLEITGETK-RRGTKITFFPDGEIFETTEFSFDVLSKRLRELAFLN 59

Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263
           + V+I + D+R+ +  +   FY+GGI +FV YL+++K  +   PI I+G +  + I++AM
Sbjct: 60  AGVRIKIHDERTEKDHD--FFYEGGIRSFVEYLNKNKNLVNPEPIYIRGEKSGVDIEIAM 117

Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323
           ++ND Y E V  F NNI   +GGTHL G +++LTR + +Y   +   K  K ++ GDD R
Sbjct: 118 QYNDSYDEKVFSFANNINTHEGGTHLVGFKASLTRTMNTYATANNLLKNVKVAISGDDLR 177

Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           EG T+V+S+K+  P+F  QTK KL +SEV+  VE+ +N+ L+ +LEE+P  A+ I++
Sbjct: 178 EGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNEKLATYLEENPAMARKILE 234


>gi|281331682|emb|CAZ40035.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 234

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 112/231 (48%), Positives = 147/231 (63%), Gaps = 3/231 (1%)

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQDF 187
           NALS  L + + + G  Y+  F NG     L          GT V F PS+  F    +F
Sbjct: 1   NALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRGTTVRFWPSTVAFHDNVEF 59

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +YD L  RLRELSFLNS V+I L D+R  E R     Y+GGI +FV +L + K PL  + 
Sbjct: 60  HYDILARRLRELSFLNSGVKIVLADER-GEGRRDDFHYEGGIRSFVEHLAQLKTPLHPNV 118

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
           I + G  + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R ALTR + +Y+E++
Sbjct: 119 ISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVLNNYIEQN 178

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
             +K+ K ++ GDD REG  +VLS+K+PDP FSSQTKEKLVSS+VR  VE 
Sbjct: 179 GIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVEK 229


>gi|4586420|dbj|BAA76397.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 102/407 (25%), Positives = 163/407 (40%), Gaps = 42/407 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDT 169
            K++K S GL+GVG   VNALS + ++   R+       F  G L   L      +    
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGNLT--LEEDIIESTKRK 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G+
Sbjct: 59  GTKVSFIADEVIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGL 110

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  +      +  +    I + G    I+I         Y E    F N      GGTHL
Sbjct: 111 KDLLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHL 166

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
              R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S
Sbjct: 167 GAFRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGS 217

Query: 350 SEV-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLT 399
           +++       R+ V  F+   L  +L ++P  A ++++K+L A   R      R      
Sbjct: 218 TDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDR 277

Query: 400 RRKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK
Sbjct: 278 AKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGK 337

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            LN        +  ++E   L  AL          +  LRY+ I+I 
Sbjct: 338 PLNSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIA 379


>gi|6691609|dbj|BAA89363.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 101/407 (24%), Positives = 162/407 (39%), Gaps = 42/407 (10%)

Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-TGSAGNDT 169
            K++K S GL+GVG   VNALS + ++   R+       F  G L   L      +    
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGNLT--LEEDIIESTKRK 58

Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229
           GT+V+F+    IF    +  + +   L+   +LN+ + I    ++         F   G+
Sbjct: 59  GTKVSFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK--------FFSNNGL 110

Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289
           +  +      +  +    I + G    I+I         Y E    F N      GGTHL
Sbjct: 111 KDLLEENIAEEDMVYP-IIHLLGDDIEIAIT---HSKTQYSEEYYSFVNGQNTTQGGTHL 166

Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
              R ++ + I  +  K              D R+   S + +++ +P F SQTK KL S
Sbjct: 167 GAFRESIVKTIKEFYNK---------PFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGS 217

Query: 350 SEV-------RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR---DLT 399
           +++       R+ V  F+   L  +L ++   A ++++K+L A   R      R      
Sbjct: 218 TDMGPDLPSVRTFVNDFIKTKLDNFLHKNLETADLLLRKILQAERERKELSGIRKLAKDR 277

Query: 400 RRKGVLDIA---SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456
            +K  L           L D       +S LF+ EGDSA GS  + R    QA+  LRGK
Sbjct: 278 AKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGK 337

Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            LN        +  ++E   L  AL          +  LRY+ I+I 
Sbjct: 338 PLNSYGMSKKIVYENEEFNLLQAALNI-----EESMEDLRYNNIVIA 379


>gi|29652992|gb|AAO87465.1| DNA gyrase B [Listeria monocytogenes]
          Length = 216

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 114/200 (57%), Positives = 149/200 (74%), Gaps = 2/200 (1%)

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AA+RAR++ R+   L+I+SLPGKLADCS R+P+ SEL++VEGDSAGGSAKQGR R  QAI
Sbjct: 2   AAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAI 61

Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510
           LP+RGKILNVE+AR D++L+++EI T+ TA+GTG G D FD++K RYHK+IIMTDADVDG
Sbjct: 62  LPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDG 120

Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570
           AHIRTLLLT F+R M  L+  G++YI +PPLY I  GK ++YV  +  LEDYL +     
Sbjct: 121 AHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASLDGDT 180

Query: 571 E-IELFCDSKGVISKNDLRN 589
           +         G ++   L +
Sbjct: 181 KYSIQRYKGLGEMNPEQLWD 200



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 66/182 (36%), Gaps = 4/182 (2%)

Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647
           I +   ++           +  + QA++     + N E  +   +    ++      +  
Sbjct: 35  ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 94

Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707
                +  S +    L+      V    +        +      + +  I      +  +
Sbjct: 95  GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQI 154

Query: 708 ICNGDKIKITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766
                   +     L D + S  G    S+QRYKGLGEMN  QLW+TT+NP+ R+LL+V 
Sbjct: 155 KHGKQVEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVN 214

Query: 767 IT 768
           I 
Sbjct: 215 IK 216


>gi|209420596|gb|ACI47061.1| gyrase B [Mycobacterium tuberculosis]
          Length = 303

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 176/303 (58%), Gaps = 30/303 (9%)

Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------- 214
           IF   +++++T+  RL+E++FLN  + I+L D+R                          
Sbjct: 1   IFETTEYDFETVARRLQEMAFLNKGLTINLTDERVSNEEVVDEVVSDTADAPKSAQEKAA 60

Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270
                 + +  T  Y GG+  FV +++R K P+ QS I   G      +++AM+WN GY 
Sbjct: 61  ESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSIIDFDGKGPGHEVEIAMQWNGGYS 120

Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330
           E+V  F N I   +GGTH  G RSALT  +  Y +     K    ++ GDD REG  +V+
Sbjct: 121 ESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAVI 180

Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390
           S+K+ +P+F  QTK KL ++EV+S V+   N+ L+ W E +P +AK++V K + ++  R 
Sbjct: 181 SVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVVVNKAVSSAQARI 240

Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450
           AAR+AR+L RRK   D+  LPGKLADC   DP+KSEL++VEGDSAGGSAK GR    QAI
Sbjct: 241 AARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAI 300

Query: 451 LPL 453
           LPL
Sbjct: 301 LPL 303


>gi|45593182|gb|AAS68160.1| gyrase B [Geobacter humireducens]
          Length = 237

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 98/236 (41%), Positives = 154/236 (65%), Gaps = 3/236 (1%)

Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204
           +Y  S+  G+   PL +TG      GT++TFLP  +IF   +F++D L  RLREL+FLN+
Sbjct: 2   LYTQSYRRGVPQAPLAITGETK-RRGTKITFLPDGEIFETTEFSFDVLSKRLRELAFLNA 60

Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264
            V+I + D+R+ +  +   FY+GGI +FV YL+++K  +   PI I+G +  + I++AM+
Sbjct: 61  GVRIKIHDERTEKDHD--FFYEGGIRSFVEYLNKNKNLVNPDPIYIKGEKSGVDIEIAMQ 118

Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324
           +ND Y E V  F NNI   +GGTHL G +++LTR + +Y   +   K  K ++ GDD RE
Sbjct: 119 YNDSYDEKVFSFANNINTHEGGTHLVGFKASLTRTMNNYATANNLLKNVKVAISGDDLRE 178

Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380
           G T+V+S+K+  P+F  QTK KL +SEV+  VE+ +N+ L+ +LEE+P  A+ I++
Sbjct: 179 GLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNEKLAMYLEENPAMARKILE 234


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.139    0.462 

Lambda     K      H
   0.267   0.0427    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,617,726,757
Number of Sequences: 14124377
Number of extensions: 463674698
Number of successful extensions: 847566
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 11933
Number of HSP's successfully gapped in prelim test: 1755
Number of HSP's that attempted gapping in prelim test: 793739
Number of HSP's gapped (non-prelim): 18832
length of query: 803
length of database: 4,842,793,630
effective HSP length: 148
effective length of query: 655
effective length of database: 2,752,385,834
effective search space: 1802812721270
effective search space used: 1802812721270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 86 (37.7 bits)